# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Pantoea_stewartii_subsp._stewartii_DC283-ASM24839v2/GCA_000248395.2_ASM24839v2_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Pantoea_stewartii_subsp._stewartii_DC283-ASM24839v2/GCA_000248395.2_ASM24839v2_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Pantoea_stewartii_subsp._stewartii_DC283-ASM24839v2/GCA_000248395.2_ASM24839v2_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EHT97532.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97532.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97532.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97532.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97532.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97532.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97532.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97532.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97532.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97532.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97532.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97532.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97532.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97532.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97532.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97532.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97532.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97532.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2245.76
//
Query:       EHT97533.1  [L=39]
Description: hypothetical protein CKS_5623 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 305.65
//
Query:       EHT97534.1  [L=162]
Description: hypothetical protein CKS_5624 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1212.48
//
Query:       EHT97535.1  [L=754]
Description: DNA topoisomerase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-86  290.1   0.0    3.8e-86  289.7   0.0    1.1  1  Topoisom_bac    DNA topoisomerase
    5.4e-17   61.5   1.5    1.2e-16   60.4   0.8    2.0  2  Toprim_Crpt     C-terminal repeat of topoisomerase
    2.7e-15   56.5   0.0    5.8e-15   55.4   0.0    1.6  1  Toprim          Toprim domain
      4e-08   32.9   3.9      4e-08   32.9   3.9    2.7  2  zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.7   0.0   8.5e-90   3.8e-86       5     413 .]     152     598 ..     149     598 .. 0.94

  Alignments for each domain:
  == domain 1  score: 289.7 bits;  conditional E-value: 8.5e-90
  Topoisom_bac   5 nlvdaaeaRrelDwliGinlsrlltkklkg...kkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke.......kkkkkkkeri 91 
                    l++ a aR++ D+++Gi ++r++t ++++    +v+s+GRVqtp+L++ v+R  + +n++   yw+v+a+l   +++         +   ++k++i
    EHT97535.1 152 GLSNRAFARSVGDFIYGIPVTRACTVAARErghTEVISVGRVQTPILGMMVRRFLANQNHKESWYWQVRAHLGGLNAPIVaglvipeDAPVDDKGKI 248
                   688999********************44444579*************************************95555555569****988999***** PP

  Topoisom_bac  92 kdkeeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlsee..aelkailealak 186
                   +++  a+++++++  k+a+v++ + + k+k+pplpf + +Lq ++sr + +s++ tl+i q+L ek+  itY R+d+++l+ee  a+++ +l+a+++
    EHT97535.1 249 NSEGYANELASACTGKNATVTAATVEPKSKAPPLPFALLDLQVKMSRLHDISSEDTLKITQALREKHAAITYNRSDCRYLNEEqfADAPGTLRAISN 345
                   *************7779******************************************************************9989*********9 PP

  Topoisom_bac 187 kygkeylefaekllkktkkksvvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktilekGf 283
                   ++  e+++f +k++++++++ +++++k++aH+ I+Pt++  + + l+ +ekk+Y+ Iv+++l +++++ ++++  +++ ++e++f+++ ++ +++G+
    EHT97535.1 346 TFP-ELAPFFAKADSSRQSR-AFNESKTTAHTGIIPTQKSIDASLLTTNEKKVYQAIVEQYLVQFLEEKEFKSALAEFGIGEYTFRLRATRCTNAGW 440
                   866.6999999999966655.899*************777788999*************************************************** PP

  Topoisom_bac 284 kkvykeekkeeeee.....elpelkegeevkvkeveleekkTkppkryteasLikameka..........................giGtpaTraei 349
                    ++ ke+  e++ +      l+ l++g++ ++++v++   kT+pp+ yteasL++ + +                           giGtpaTr +i
    EHT97535.1 441 SALLKEKGGEQD-NgalfdALSVLTVGDTAECQKVDVVCDKTTPPPLYTEASLLEDLRRVaryvedpkikqllldrdtdkddqeqgGIGTPATRGAI 536
                   ****77666665.3489999***************************************************************************** PP

  Topoisom_bac 350 ieklvergYverkkkslvptelGkalvellekfkdlvspelTaeleekLdeIaegkadakevld 413
                   +e l+erg+    kk++vptelG++l+++l+  + ++ p++Ta + e+ + I+ g+++ +++ld
    EHT97535.1 537 LELLLERGFYSIIKKQIVPTELGISLIQALP--PIMTTPDMTALWHEQQKMIEVGELSVDSFLD 598
                   **********9999****************9..88************************99985 PP

>> Toprim_Crpt  C-terminal repeat of topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.85   3.8e+03      15      30 ..     503     518 ..     500     519 .. 0.84
   2 !   60.4   0.8   2.7e-20   1.2e-16       2      59 ..     691     749 ..     690     750 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.85
  Toprim_Crpt  15 lseeevkeLltkgktg 30 
                   ++  +k+Ll ++ t+
   EHT97535.1 503 VEDPKIKQLLLDRDTD 518
                  57899*****999997 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 2.7e-20
  Toprim_Crpt   2 CgfsigktiagkklseeevkeLltkgktgllkGFk.sKkgkkFdAyLvldkdeeveFdF 59 
                  C+f+++ t  gk+l+ +++ +Ll+kgkt  +kGFk  K+gkk+dA+L+l++d++v+  F
   EHT97535.1 691 CKFVLWGTQFGKTLTITQISDLLSKGKTREIKGFKsTKTGKKYDAALQLQSDGSVSLMF 749
                  ***********************************99****************988877 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.3e-18   5.8e-15       2     102 ..       4     131 ..       3     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.3e-18
                 EEEESSHHHHHHHHHTHT..........STEEEEEEESSSSEEEHS..TTEEEEE.................ECTTTHHHHHHHHHHHHHHSEEEEECS CS
      Toprim   2 lvivEgpsdaktiakalg..........sgfqavtaslGhildlet..efkpvye.................eiedkkkvlkalkelakradeiilatD 71 
                 l+i+E+p+ a+ ia+alg          +g+ +v  ++Gh+l+++    ++p+y+                 +ie +  ++++l++l ++adei+ a D
  EHT97535.1   4 LFIAEKPNLAQVIAQALGnpqykdgyivCGDDVVSYCVGHLLKIAPpeHYNPEYKrwskdtlhmklrpvqhlVIERTAAQFEILAKLISQADEIVHAGD 102
                 9*********************************************9988888889999999999999999**************************** PP

                 SSHHHHHHHHHHHHHHTHHHTTTEEEEEESS CS
      Toprim  72 pDreGeaiawellevlkellenkigrvefse 102
                 pD+eG+ +  e+l++++  + + ++rv ++ 
  EHT97535.1 103 PDEEGQLLVDEVLQYCC--CTAPVKRVLIND 131
                 *****************..888899998875 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   3.9   8.9e-12     4e-08       7      37 ..     625     655 ..     623     657 .. 0.93
   2 ?    1.0   3.8      0.08   3.6e+02       3      30 ..     669     691 ..     667     698 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 8.9e-12
                     S--EEEEEE-SSSEEEEESST.T----EEB- CS
  zf-C4_Topoisom   7 CggdLvlkrgkkGkFvGCsnYPeCkftkklk 37 
                     Cgg  v+++  kG+F GC+nYPeC++++++ 
      EHT97535.1 625 CGGRYVRRKNEKGTFWGCNNYPECRNAVPDR 655
                     **************************99875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.08
                     E-SSS--EEEEEE-SSSEEEEESST.T- CS
  zf-C4_Topoisom   3 kCPkCggdLvlkrgkkGkFvGCsnYPeC 30 
                      CP C++++ +  +       C+n   C
      EHT97535.1 669 NCPRCKAKMKYHPKAC----NCTNE-AC 691
                     7*******98876665....35554.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5011.70
//
Query:       EHT97536.1  [L=173]
Description: single-stranded DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-41  139.7   0.5    3.9e-41  139.3   0.5    1.2  1  SSB       Single-strand binding protein family


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.5   2.2e-45   3.9e-41       1     103 [.       6     112 ..       6     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 2.2e-45
                 ECEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEE.TTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEE CS
         SSB   1 vnkvilvGrlgkdpelrqtesGnavarftlatnrrfkd.qegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrysteiva 98 
                 vnkvilvG+lg+dpe+r+++sG ava++tlat+++++d  +ge +e+tewhrvv+fgklaev+ eyl+kGs+vy+eG+l+trk++dq g+++y+te+v+
  EHT97536.1   6 VNKVILVGNLGADPEVRYMPSGGAVANITLATSESWRDkATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQAGTEKYTTEVVV 104
                 7*************************************99*********************************************************** PP

                 E...EEEE CS
         SSB  99 e...evqf 103
                 +   ++q+
  EHT97536.1 105 NvggTMQM 112
                 97777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1352.30
//
Query:       EHT97537.1  [L=46]
Description: hypothetical protein CKS_5628 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.27s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 347.43
//
Query:       EHT97538.1  [L=174]
Description: DnaJ-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-14   52.0   2.0    1.9e-13   50.3   0.3    2.2  2  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.46   10.0   4.8        6.4    6.2   0.1    3.4  4  DegS      Sensor protein DegS


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.3   2.2e-17   1.9e-13       5      56 ..       9      60 ..       5      68 .. 0.89
   2 ?    1.1   0.1     0.049   4.4e+02      28      50 ..     133     156 ..     123     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.2e-17
                HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSH CS
        DnaJ  5 iLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdp 56
                + g+s + +++eIkkaY+k +lk+HPD+n+++p a+e  k in+A+++L+ +
  EHT97538.1  9 VFGLSGELTKEEIKKAYKKASLKHHPDRNKDNPIAAEIMKAINAAFDFLMAN 60
                789999*******************************************754 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.049
                 HSTTTSCCHH.HHHHHHHHHHHHH CS
        DnaJ  28 yHPDknpkdp.eaeekFkeineAy 50 
                 y P+++++++ ++e+   ei e y
  EHT97538.1 133 YRPEEHKSSRnRKEHSMDEIREMY 156
                 678877666657777888888777 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.012   1.1e+02      75      87 ..      17      29 ..      13      34 .. 0.86
   2 ?    6.2   0.1   0.00072       6.4     124     150 ..      43      69 ..      38      78 .. 0.87
   3 ?   -1.0   0.0      0.12   1.1e+03      27      61 ..      80     114 ..      73     127 .. 0.73
   4 ?    1.0   0.3      0.03   2.7e+02      65      84 ..     138     157 ..     125     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.012
        DegS 75 seeeikeaYeeak 87
                ++eeik+aY++a+
  EHT97538.1 17 TKEEIKKAYKKAS 29
                789********97 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00072
        DegS 124 AeklvsqvgvvlnyLsgdlkqvsekle 150
                 A ++++ ++ ++++L  +l++v++  +
  EHT97538.1  43 AAEIMKAINAAFDFLMANLEKVNQYQS 69 
                 6789******************98654 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.12
        DegS  27 keverlkkeleelkeevsevikevdklekkerkar 61 
                 +e+er+ +el++l + + evi +   ++ +++  +
  EHT97538.1  80 EELERVLTELNNLPDIIFEVIGNWVWISGDTKTHK 114
                 57888888888888888888876655555555555 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.03
        DegS  65 aeVskdFkkyseeeikeaYe 84 
                  + s++ k++s +ei+e Y 
  EHT97538.1 138 HKSSRNRKEHSMDEIREMYG 157
                 55689999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1266.27
//
Query:       EHT97539.1  [L=108]
Description: hypothetical protein CKS_5631 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 851.74
//
Query:       EHT97540.1  [L=98]
Description: hypothetical protein CKS_5632 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 723.80
//
Query:       EHT97541.1  [L=167]
Description: hypothetical protein CKS_5633 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0091   16.1   0.0      0.015   15.4   0.0    1.3  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
  ------ inclusion threshold ------
      0.012   15.6   0.2        1.5    8.9   0.0    2.4  2  HTH_19          Helix-turn-helix domain
      0.016   13.9   0.0      0.018   13.7   0.0    1.1  1  AAA_13          AAA domain
      0.074   13.4   0.1       0.25   11.7   0.1    2.0  1  HTH_31          Helix-turn-helix domain
      0.082   12.6   0.0       0.11   12.2   0.0    1.2  1  MAGE            MAGE family
      0.096   12.3   0.0       0.17   11.5   0.0    1.5  1  DUF4264         Protein of unknown function (DUF4264)


Domain annotation for each model (and alignments):
>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.1e-06     0.015      72     125 ..      10      64 ..       3      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.1e-06
  MqsA_antitoxin  72 afiarvrkkleldqreaaeifGgGvnafsryekGkvrppla.lvkllklldrhPe 125
                     +  +r r  l+ +q+e+a++fG    ++   e+   r +++ +  ll ll+ hP+
      EHT97541.1  10 ELAQRARVFLNRTQKEMAALFGLSLRSWQDKEQNTNRVSVSeTYMLLLLLNEHPD 64 
                     556788999*************************999998735678899*****8 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00051       1.5       5      47 ..      13      70 ..       9      74 .. 0.68
   2 ?    4.6   0.0     0.011        34      18      45 ..     137     163 ..     134     167 .] 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00051
      HTH_19  5 keaReelgltqeelae.................rlgisrskisaiEngkkdvpsaelllk 47
                ++aR  l+ tq+e+a                  r+++s +++  +  ++   p++ ll++
  EHT97541.1 13 QRARVFLNRTQKEMAAlfglslrswqdkeqntnRVSVSETYMLLLLLNE--HPDYQLLPR 70
                68**************666666666666666666666666666666664..366666655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
      HTH_19  18 laerlgisrskisaiEngkkdvpsaell 45 
                 l+++l   r++i+ +E++++ ++ ael 
  EHT97541.1 137 LSKELEKARNRITYLESDNS-KLRAELA 163
                 78899999**********99.8888775 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     6e-06     0.018      49     115 ..      99     165 ..      71     167 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-06
      AAA_13  49 angsieitngeeldirVfNrdFveenlseqgelkpvftLGeesiekqekieklkkeikkleekleaa 115
                 ++  +e++n    +i+ f +dFv +  ++qg+l+pv++L +e   ++++i+ l+++  kl+++l ++
  EHT97541.1  99 PSKVVELENALDAAILAFREDFVADMDNGQGDLSPVAVLSKELEKARNRITYLESDNSKLRAELAKN 165
                 44555888888999***********9999***************************99999887665 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.5e-05      0.25       7      46 ..      13      51 ..       8      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.5e-05
      HTH_31  7 ralReraGLsqeevAerlgvsestlsrlEqGrrgrpspav 46
                +++R   + +q+e+A++ g+s   + + Eq ++ r+s + 
  EHT97541.1 13 QRARVFLNRTQKEMAALFGLSLRSWQDKEQNTN-RVSVSE 51
                555666689**********************99.898764 PP

>> MAGE  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.7e-05      0.11      32      69 ..      14      51 ..       4      91 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
        MAGE 32 afkkvfeeaqkqLrdvFGmeLvelpskeekkstessqe 69
                + +  ++++qk++ + FG+ L+ ++ ke++ +  s +e
  EHT97541.1 14 RARVFLNRTQKEMAALFGLSLRSWQDKEQNTNRVSVSE 51
                5677899********************96655544444 PP

>> DUF4264  Protein of unknown function (DUF4264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.7e-05      0.17      22      41 ..      18      37 ..      17      52 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
     DUF4264 22 fLNktLKdkdlmFGLskdkk 41
                fLN+t K+   +FGLs+ + 
  EHT97541.1 18 FLNRTQKEMAALFGLSLRSW 37
                9***************9543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1221.20
//
Query:       EHT97542.1  [L=72]
Description: hypothetical protein CKS_5634 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.069   13.1   0.1       0.07   13.1   0.1    1.1  1  tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putativ


Domain annotation for each model (and alignments):
>> tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-06      0.07      43      80 ..      12      49 ..       2      72 .] 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-06
  tRNA_NucTran2_2 43 allkllekrknaeltklelykageealllaeelaqaqg 80
                     ++ k++++ +++++tkl+ly++g e  l+ + l+    
       EHT97542.1 12 EAHKAITQFQTGKITKLDLYAKGVELTLKFNDLMDSAA 49
                     4568999999*******************999954333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 535.12
//
Query:       EHT97543.1  [L=58]
Description: hypothetical protein CKS_5635 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.007   16.7   0.0     0.0082   16.4   0.0    1.1  1  DUF5638   Family of unknown function (DUF5638)


Domain annotation for each model (and alignments):
>> DUF5638  Family of unknown function (DUF5638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.6e-07    0.0082      30      60 ..      25      55 ..      15      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.6e-07
                HHHHHHHHHHHHHHHHT--SHHHHHHHHHHH CS
     DUF5638 30 kkqlqeiktyYnesftkakkektkeeiveeY 60
                k+ + +ik +Yn +++ +++ek+keei++++
  EHT97543.1 25 KQIIANIKGWYNFAYSPSEQEKAKEEILKSF 55
                67899***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 436.00
//
Query:       EHT97544.1  [L=68]
Description: hypothetical protein CKS_5636 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 529.88
//
Query:       EHT97545.1  [L=102]
Description: hypothetical protein CKS_5637 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-16   60.3   0.0    2.2e-16   60.1   0.0    1.0  1  HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antit


Domain annotation for each model (and alignments):
>> HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.2e-20   2.2e-16      36     123 .]       2      96 ..       1      96 [. 0.84

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.2e-20
  HicB_lk_antitox  36 nakeaielhlegliedgeeip.epss..ieellanpeyag.giwalvdvdlskldgkaeriNitlpervlkriDaavkaag...esRSgflaka 122
                      +a+eai   +e+++ +g++     ++     + an+eya    w ++dvdl++++gk++r+Nitlp+ ++kriD +++ ++   + RS+fla+a
       EHT97545.1   2 MAREAILSIVEEMLLSGAHSVeDIKDagFMVYAANAEYAHcDSWFMIDVDLTEFEGKQQRVNITLPDVLIKRIDGFIQGNRsayKDRSHFLAQA 95 
                      79**********9998876541444411455679999998468**********************************99887778********9 PP

  HicB_lk_antitox 123 a 123
                      a
       EHT97545.1  96 A 96 
                      8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 839.92
//
Query:       EHT97546.1  [L=86]
Description: hypothetical protein CKS_5638 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 633.21
//
Query:       EHT97547.1  [L=160]
Description: hypothetical protein CKS_5639 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00092   17.6   6.6     0.0012   17.3   6.6    1.0  1  CCCAP          Centrosomal colon cancer autoantigen protein f
      0.004   16.5   0.1     0.0058   16.0   0.1    1.4  1  ThrE           Putative threonine/serine exporter
  ------ inclusion threshold ------
      0.011   15.8   5.6      0.051   13.6   0.3    2.1  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
      0.015   15.4   3.3        2.4    8.3   0.3    2.2  2  DUF2730        Protein of unknown function (DUF2730)
      0.065   12.9   1.7      0.076   12.6   1.4    1.3  1  CARMIL_C       CARMIL C-terminus
      0.067   11.2   5.2      0.078   10.9   4.5    1.4  1  Prominin       Prominin
       0.11   10.3   5.2       0.13   10.0   5.2    1.0  1  Nup88          Nuclear pore component
       0.13   12.9   2.6       0.61   10.7   0.4    2.4  2  SlyX           SlyX
       0.15   11.5   8.1      0.072   12.5   0.6    2.0  2  DUF4618        Domain of unknown function (DUF4618)
       0.17   12.5   4.1        8.1    7.1   0.0    3.1  2  Sas10_Utp3     Sas10/Utp3/C1D family
       0.33   11.1   5.9       0.63   10.2   3.8    2.0  2  CREPT          Cell-cycle alteration and expression-elevated 
       0.36   11.1   9.0       0.77   10.1   1.1    2.5  3  DUF5082        Domain of unknown function (DUF5082)
       0.36   10.6   5.1        3.3    7.6   0.4    2.8  2  DASH_Duo1      DASH complex subunit Duo1
       0.44   11.0   5.1        5.8    7.5   0.7    2.4  2  NPV_P10        Nucleopolyhedrovirus P10 protein
       0.47   10.6   8.3       0.49   10.6   4.5    2.1  2  COG5           Golgi transport complex subunit 5
       0.63   10.0   6.1        1.6    8.7   1.6    2.1  2  DUF4446        Protein of unknown function (DUF4446)
        0.7    9.9   4.1          5    7.2   2.7    2.1  2  DUF1870        Domain of unknown function (DUF1870)
        1.7    9.2   7.2        7.9    7.0   7.2    2.0  1  DUF16          Protein of unknown function DUF16
        2.4    7.7   7.4        1.2    8.7   0.3    2.3  2  Fzo_mitofusin  fzo-like conserved region
        4.1    8.1   7.1        2.4    8.8   0.4    2.2  2  DUF4665        Domain of unknown function (DUF4665)
        7.2    7.1   9.4         12    6.3   0.7    3.2  4  FlaC_arch      Flagella accessory protein C (FlaC)
        7.3    7.3   6.6         12    6.5   0.5    2.5  2  YabA           Initiation control protein YabA


Domain annotation for each model (and alignments):
>> CCCAP  Centrosomal colon cancer autoantigen protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   6.6   1.4e-06    0.0012     363     476 ..      13     125 ..       7     130 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
       CCCAP 363 selerqkerlekelasqqekraeekealrkevkkereelaakllalsqnvakleaqlekvt.reknslvsqleeaqkqlasqevdvtkvcgelryqlnk 460
                 +el      l+ke++s  ek+ +e   lr+ +    e+++  ++ l++ + + e+  +  t +++  l++ql+e++ +l  +    +++  e+   ++k
  EHT97547.1  13 KELLEDYIALDKEIKSIPEKINTELTSLRETISSLPENIEISIVKLANALEEAESSFDELTiKHRAILMNQLDESKLEL--RAAIKNEIVNEISESIQK 109
                 5666666789***********************************************99885788889*****986555..6677899*********** PP

       CCCAP 461 tklkkdeaekelreyr 476
                 t+++ d  e +++++ 
  EHT97547.1 110 TQMHLDKFESKVKDIT 125
                 ************9986 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   7.1e-06    0.0058      72     127 ..      97     151 ..      34     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.1e-06
        ThrE  72 lsevnelsreiaageisleeaeerLdeIerskpryprwlvvlaaglaaaafallfg 127
                  + vne+s++i++ ++ l++ e++ ++I++s + + ++   +a++++++a++l +g
  EHT97547.1  97 NEIVNEISESIQKTQMHLDKFESKVKDITESNN-FINYKSWVAIIILSGALVLSIG 151
                 5679************************88876.8888888888888888877665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   6.2e-05     0.051      67     117 ..      17      64 ..       2      78 .. 0.65
   2 ?    5.0   3.3     0.028        23      42     106 ..      57     126 ..      49     133 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.2e-05
  Baculo_PEP_C  67 tlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnn 117
                   +   +L++ ++++ +++++eLt+l   +++L     Ni+ ++  l +al+ 
    EHT97547.1  17 EDYIALDKEIKSIPEKINTELTSLRETISSLP---ENIEISIVKLANALEE 64 
                   44556777777777777777777777777777...5556666555555554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.028
  Baculo_PEP_C  42 aietqLnalsedlksllaeldt....rldtlltnLtdal.nalqdtlrneLtnlnsiltnLlssvtNins 106
                   ++++ L++ ++++ +l  + ++    +ld++  +L +a+ n++ +++++ ++ ++  l    s+v  i +
    EHT97547.1  57 KLANALEEAESSFDELTIKHRAilmnQLDESKLELRAAIkNEIVNEISESIQKTQMHLDKFESKVKDITE 126
                   3333344444444433333332555588888888888885567788888888888888888888877765 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0038       3.1      39      86 ..      27      76 ..      12      86 .. 0.71
   2 ?    8.3   0.3    0.0029       2.4      31      63 ..      96     128 ..      84     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0038
     DUF2730 39 aekveendkrlteletkvenLPtakdle..kLkllladlrgelkaleaev 86
                + + e++++ lt+l  ++++LP + +++  kL   l++ +  +++l+ + 
  EHT97547.1 27 KSIPEKINTELTSLRETISSLPENIEISivKLANALEEAESSFDELTIKH 76
                3446778999************9887762255566777777777666554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0029
     DUF2730  31 kredleklaekveendkrlteletkvenLPtak 63 
                 k e ++++ e+++++++ l++ e+kv+++   +
  EHT97547.1  96 KNEIVNEISESIQKTQMHLDKFESKVKDITESN 128
                 5555789*******************9986655 PP

>> CARMIL_C  CARMIL C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.4   9.4e-05     0.076      45      90 ..      80     124 ..      56     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.4e-05
    CARMIL_C  45 iinklnEvkLsvaaalsDrivDevLesLsrsqkkLaehleqrsepl 90 
                  +n l+E kL + aa+ + iv e+ es++++q  L ++ e++ +++
  EHT97547.1  80 LMNQLDESKLELRAAIKNEIVNEISESIQKTQMHL-DKFESKVKDI 124
                 49****************************99887.4445665665 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.5   9.5e-05     0.078     249     359 ..      10     127 ..       2     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.5e-05
    Prominin 249 keakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCq....seeCskilssleiekldtskcl.dqlpnvdevl.ealeevletnlssivk 340
                 +++ke+Le   +l ke+++  +++++ l++ ++ ++++ +n +++    ++  ++++ss +  +++  + l +ql++ + +l  a+++ + +++s+ ++
  EHT97547.1  10 QKVKELLEDYIALDKEIKSIPEKINTELTSLRETISSLPENiEISivklANALEEAESSFDELTIKHRAILmNQLDESKLELrAAIKNEIVNEISESIQ 108
                 567899999999999999999999999999999999999998888776547777778888888888888889999888766515799999999999999 PP

    Prominin 341 eglarlneipekvknqtae 359
                 +    l++ ++kvk+ t++
  EHT97547.1 109 KTQMHLDKFESKVKDITES 127
                 9999999999999987765 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.2   0.00016      0.13     563     655 ..      26     128 ..       7     137 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
       Nup88 563 lkkqkeqqleelqsleeerkslserae....klAekyeeikdkQeklvrrvkkvlkr.lnsklpvlsea.e....remkkelekikeklkslknalkqv 651
                 +k+  e+  +el sl+e+  sl e+ e    klA+ +ee++   ++l+ + +++l + l ++   l  a +     e+++ ++k++++l++++ ++k++
  EHT97547.1  26 IKSIPEKINTELTSLRETISSLPENIEisivKLANALEEAESSFDELTIKHRAILMNqLDESKLELRAAiKneivNEISESIQKTQMHLDKFESKVKDI 124
                 45555777888999999988888887766669***************9999988654144433333222020011344555555555555555555555 PP

       Nup88 652 kkkl 655
                 ++  
  EHT97547.1 125 TESN 128
                 5554 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.47   3.8e+02      21      44 ..      32      55 ..       7      79 .. 0.64
   2 ?   10.7   0.4   0.00075      0.61       7      45 ..      88     126 ..      86     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.47
                HHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX 21 eLndvvaeqqqqidrlqrqlrlla 44
                + n +++  +++i+ l + ++   
  EHT97547.1 32 KINTELTSLRETISSLPENIEISI 55
                455555555555555555555444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00075
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   7 eLEiklafqedtieeLndvvaeqqqqidrlqrqlrllae 45 
                 +LE + a   + ++e ++ + + q  +d+ + +++ ++e
  EHT97547.1  88 KLELRAAIKNEIVNEISESIQKTQMHLDKFESKVKDITE 126
                 799**************************9999998776 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   8.8e-05     0.072      33      97 ..       5      69 ..       2      75 .. 0.92
   2 ?    5.1   5.2     0.016        13     128     228 ..      25     126 ..      24     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.8e-05
     DUF4618 33 edstakkvrklLqqyeklktvisileksskkqleqakaeLqeweekeekklekLeqqleqlnakv 97
                e+   +kv++lL+ y  l + i+ + ++ +++l ++++ + ++ e++e  + kL++ le+ ++  
  EHT97547.1  5 EEFKDQKVKELLEDYIALDKEIKSIPEKINTELTSLRETISSLPENIEISIVKLANALEEAESSF 69
                566779*****************************************************998765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.016
     DUF4618 128 qlqqlkdsqqdeldeleelikevleklskkiqkkkekllksl.aektlkatqeaLlqktlenqvlkkeiekfrefieeleeeipeLkaeveqLqaqaee 225
                 +++ + ++ + el  l e i++  e+++ +i+k  ++l ++  + + l+  ++a+l + l++++l+   +   e+++e+ e i++ + ++++ + ++++
  EHT97547.1  25 EIKSIPEKINTELTSLRETISSLPENIEISIVKLANALEEAEsSFDELTIKHRAILMNQLDESKLELRAAIKNEIVNEISESIQKTQMHLDKFESKVKD 123
                 677777888888888888888888888888888888776643134556667788888888888898888888999999999999999999999888888 PP

     DUF4618 226 pre 228
                 + e
  EHT97547.1 124 ITE 126
                 765 PP

>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   2.3      0.17   1.4e+02       4      19 ..      58      73 ..      10      99 .. 0.58
   2 ?    7.1   0.0      0.01       8.1       2      27 ..     101     126 ..     100     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.17
  Sas10_Utp3  4 lsksldelqeslepll 19
                l+++l+e+++s+++l+
  EHT97547.1 58 LANALEEAESSFDELT 73
                2333333333333333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.01
  Sas10_Utp3   2 eslsksldelqeslepllskakaeek 27 
                 +++s+s++++q +l+++ sk+k+ ++
  EHT97547.1 101 NEISESIQKTQMHLDKFESKVKDITE 126
                 689****************9887763 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.004       3.3      86     125 ..      10      49 ..       2      61 .. 0.80
   2 ?   10.2   3.8   0.00077      0.63      19     105 ..      39     127 ..      31     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.004
       CREPT  86 eaqkellakaeekleelkeklekvksvrkelkshiqsLPd 125
                 + +kell++  +  +e+k+  ek++++ ++l+++i+sLP+
  EHT97547.1  10 QKVKELLEDYIALDKEIKSIPEKINTELTSLRETISSLPE 49 
                 4567777777778889999999999999999999999997 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00077
       CREPT  19 avReriaklPp..evsdvsllekikdkeeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkek 105
                 ++Re i++lP+  e+s v+l++ +++ e+    l+  + a+ + +   ++Le      +++ + +++ ++  +++l+k e+k++++ e 
  EHT97547.1  39 SLRETISSLPEniEISIVKLANALEEAESSFDELTIKHRAILMNQLDESKLELRAAIKNEIVNEISESIQKTQMHLDKFESKVKDITES 127
                 68********9345688999999998887777777777777666666678888888889999999999999999999999999998775 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1   0.00094      0.77      69     113 ..       9      53 ..       3      64 .. 0.85
   2 ?    0.7   0.0      0.72   5.8e+02      89     114 ..      47      72 ..      43      83 .. 0.80
   3 ?    5.0   1.2     0.034        28      88     121 ..      90     124 ..      81     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00094
     DUF5082  69 dgirsnlessyqtyvdkldelidaieeEIerLenqiseaqgvldt 113
                 d+++ +l ++y +  ++++++  +i++E + L+++is++  +++ 
  EHT97547.1   9 DQKVKELLEDYIALDKEIKSIPEKINTELTSLRETISSLPENIEI 53 
                 4566689999***************************99888865 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.72
     DUF5082  89 lidaieeEIerLenqiseaqgvldtl 114
                 l  +ie  I +L+n ++ea+++ d l
  EHT97547.1  47 LPENIEISIVKLANALEEAESSFDEL 72 
                 55678888999999999999887655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.034
     DUF5082  88 elidaieeEI.erLenqiseaqgvldtlqsqlnsl 121
                 el +ai++EI +++ ++i++ q+ ld+ +s+++++
  EHT97547.1  90 ELRAAIKNEIvNEISESIQKTQMHLDKFESKVKDI 124
                 57789999986779999999999999999999886 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5     0.035        28       2      31 ..      22      52 ..      21      83 .. 0.74
   2 ?    7.6   0.4     0.004       3.3      13      39 ..      97     123 ..      91     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.035
   DASH_Duo1  2 LekEleqL.rkinevienviesLkkaksnie 31
                L kE++++ +kin+ + +++e++ +  +nie
  EHT97547.1 22 LDKEIKSIpEKINTELTSLRETISSLPENIE 52
                5666666645788888888888887777765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.004
   DASH_Duo1  13 nevienviesLkkaksniervketves 39 
                 ne+++ + es++k++ ++++++++v++
  EHT97547.1  97 NEIVNEISESIQKTQMHLDKFESKVKD 123
                 778888888888888888888888765 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3      0.03        25      17      59 ..       9      52 ..       5      79 .. 0.66
   2 ?    7.5   0.7    0.0071       5.8      37      63 ..     100     126 ..      80     132 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.03
     NPV_P10 17 ddkVdalqqqvddvqenlpdv.telnekLdaqsaqLaeletkve 59
                d+kV+ l +    ++++++ + +++n++L ++ +++ +l +++e
  EHT97547.1  9 DQKVKELLEDYIALDKEIKSIpEKINTELTSLRETISSLPENIE 52
                56666666666666666666533466677777777666666443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0071
     NPV_P10  37 vtelnekLdaqsaqLaeletkvenIqd 63 
                 v+e++e +++ +  L+++e+kv++I++
  EHT97547.1 100 VNEISESIQKTQMHLDKFESKVKDITE 126
                 667777777777777777777777765 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2      0.17   1.4e+02      38      92 ..      15      48 ..       4      54 .. 0.52
   2 ?   10.6   4.5    0.0006      0.49      29      96 ..      49     122 ..      42     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.17
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5 38 lnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlk 92
                l +d   ld                     k+ +s+ ++++++l sL + ++ l 
  EHT97547.1 15 LLEDYIALD---------------------KEIKSIPEKINTELTSLRETISSLP 48
                333333333.....................3344455666666666665555554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0006
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXX.XXXXXXXXXXXXXXXXXXXX-TTH CS
        COG5  29 ldlstplkrlnydiqeldkrlrqlitsnhleLlehlsksks.....lss.vlselksslesLsasyerlkskvl 96 
                 + +++++ +l  +++e ++  ++l+ ++   L+++l++sk       ++ +++e+ +s+++ ++++++ +skv 
  EHT97547.1  49 ENIEISIVKLANALEEAESSFDELTIKHRAILMNQLDESKLelraaIKNeIVNEISESIQKTQMHLDKFESKVK 122
                 57889999****************************998642222234449999****************9995 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2      0.07        57      39      82 ..       8      51 ..       2      69 .. 0.72
   2 ?    8.7   1.6    0.0019       1.6      32      90 ..      78     136 ..      68     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.07
     DUF4446 39 dgksleellkekleeveelkeeseelekeieeleeklkkslqkv 82
                ++++++ell+++++  +e+k+  e++++e+++l+e++++  +++
  EHT97547.1  8 KDQKVKELLEDYIALDKEIKSIPEKINTELTSLRETISSLPENI 51
                56677778888887777777777777777777777776655554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0019
     DUF4446  32 kklmkgkdgksleellkekleeveelkeeseelekeieeleeklkkslqkvglvrYdAF 90 
                   lm++ d+++le   + k e v+e++e+ ++++ +++++e+k+k   +  ++++Y+ +
  EHT97547.1  78 AILMNQLDESKLELRAAIKNEIVNEISESIQKTQMHLDKFESKVKDITESNNFINYKSW 136
                 46888899999999999999***************************999999999875 PP

>> DUF1870  Domain of unknown function (DUF1870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1       0.1        85      41      73 ..      27      62 ..      19      76 .. 0.68
   2 ?    7.2   2.7    0.0062         5      46     105 ..      79     139 ..      34     143 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.1
                S---HHHHHHHHHHHHHHHHH...HHHHHHHHCCS- CS
     DUF1870 41 lpipdeivaelkelkklrkkk...ieeiveklndri 73
                 +ip++i++el +l+++  ++   ie+ + kl + +
  EHT97547.1 27 KSIPEKINTELTSLRETISSLpenIEISIVKLANAL 62
                579999999999998776544111555566666655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0062
                 HHHHHHHHHH.HHHHHHHHHHHHHHCCS-S--EEE--SSHHHHHTTSTT--HHHHHHHHHH CS
     DUF1870  46 eivaelkelk.klrkkkieeiveklndrignstlryystlteflkvypeadalqWklhqsv 105
                  ++++l e k +lr    +eiv+++ ++i+++ +   + +++ + + +  +++++k + ++
  EHT97547.1  79 ILMNQLDESKlELRAAIKNEIVNEISESIQKTQMHLDKFESKVKDITESNNFINYKSWVAI 139
                 4556666555144555557899999999988888888888888888888999999887665 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.2    0.0097       7.9      29     104 .]      30     119 ..       4     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0097
                 -..BHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHH.HHH................HHHHHHHHHHHHHHHHHHHC- CS
       DUF16  29 kdsnkqrLkkieakvd....klgeqinkleqkvekqgekikelkveqka.qgeeln.........kvdetleliletLqkinkRlDsieg 104
                  +  +++L+ + ++++      + +i kl+++ e+ +   +el+ +  a   ++l+           +e ++ i e++qk++  lD+ e+
  EHT97547.1  30 PEKINTELTSLRETISslpeNIEISIVKLANALEEAESSFDELTIKHRAiLMNQLDesklelraaIKNEIVNEISESIQKTQMHLDKFES 119
                 2224455555555555555545556667777777777777777777666234455599999999888999****************9996 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3    0.0014       1.2      88     143 ..       4      60 ..       1      76 [. 0.78
   2 ?    2.5   1.9      0.12        98     104     149 ..      78     125 ..      64     134 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0014
  Fzo_mitofusin  88 sancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqk.kakllrn 143
                    s++++ q  +el + +  l ++++   +++++e+++l+++i++l e ++ +  +l n
     EHT97547.1   4 SEEFKDQKVKELLEDYIALDKEIKSIPEKINTELTSLRETISSLPENIEiSIVKLAN 60 
                    7888999999********************************996655403344444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
  Fzo_mitofusin 104 arlcqqvdetekeleeeike.lekei.ekleevqkkakllrnkaslle 149
                    a l +q de++ el++ ik+ + +ei e+++++q ++ ++  k + ++
     EHT97547.1  78 AILMNQLDESKLELRAAIKNeIVNEIsESIQKTQMHLDKFESKVKDIT 125
                    567888888888888888752455662467777877777777776665 PP

>> DUF4665  Domain of unknown function (DUF4665)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.4     0.003       2.4      42      84 ..       7      50 ..       2      83 .. 0.77
   2 ?    2.6   1.4      0.26   2.1e+02      41      79 ..      94     132 ..      82     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.003
     DUF4665 42 vkkekvenldkalvdiqkdlkslskklkletkk.kekvkkkkek 84
                 k++kv++l + ++ + k++ks+++k+++e    +e++++ +e+
  EHT97547.1  7 FKDQKVKELLEDYIALDKEIKSIPEKINTELTSlRETISSLPEN 50
                4899*********************9999976424444444443 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.26
     DUF4665  41 avkkekvenldkalvdiqkdlkslskklkletkkkekvk 79 
                 a+k+e v+++++++++ q +l ++ +k+k  t+ ++ ++
  EHT97547.1  94 AIKNEIVNEISESIQKTQMHLDKFESKVKDITESNNFIN 132
                 568889999999999999999999888877776666655 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.4   5.2e+03      34      42 ..       9      17 ..       6      20 .. 0.80
   2 ?    4.3   1.1     0.064        52      10      31 ..      31      52 ..      11      58 .. 0.76
   3 ?    0.6   0.0      0.94   7.6e+02       4      26 ..      50      72 ..      48      76 .. 0.63
   4 ?    6.3   0.7     0.015        12       2      34 ..     100     132 ..      99     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.4
   FlaC_arch 34 kenVkdlls 42
                +++Vk+ll+
  EHT97547.1  9 DQKVKELLE 17
                688999986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.064
   FlaC_arch 10 sklsteletvkkeneelsksve 31
                +k+ tel+++++++++l +++e
  EHT97547.1 31 EKINTELTSLRETISSLPENIE 52
                5677777777777777777765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.94
   FlaC_arch  4 elEnklsklsteletvkkeneel 26
                ++E  + kl   le ++++++el
  EHT97547.1 50 NIEISIVKLANALEEAESSFDEL 72
                56666666666666666666665 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.015
   FlaC_arch   2 idelEnklsklsteletvkkeneelsksveelk 34 
                 ++e+ + ++k+++ l+  +++ +++ +s + ++
  EHT97547.1 100 VNEISESIQKTQMHLDKFESKVKDITESNNFIN 132
                 79999********************99987665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.3      0.16   1.3e+02      20      52 ..      15      44 ..       4      98 .. 0.52
   2 ?    6.5   0.5     0.015        12       9      42 ..      99     132 ..      92     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.16
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 20 lleeleelkeelaelleenaeLeleneklrerl 52
                lle+  +l +e++++ e+   +++e ++lre++
  EHT97547.1 15 LLEDYIALDKEIKSIPEK---INTELTSLRETI 44
                333333333333333332...222222333322 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   9 kleeleeqleelleeleelkeelaelleenaeLe 42 
                  ++e++e++++++ +l++ ++++++++e n+ ++
  EHT97547.1  99 IVNEISESIQKTQMHLDKFESKVKDITESNNFIN 132
                 47899************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2198  (0.122595); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 1105.99
//
Query:       EHT97548.1  [L=233]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0071   16.5   2.2       0.39   10.9   0.2    2.6  2  DUF1874   Domain of unknown function (DUF1874)
     0.0092   16.1   0.4      0.019   15.0   0.4    1.5  1  MMR_HSR1  50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.024   14.7   0.9      0.079   13.0   0.1    2.1  2  AAA_14    AAA domain
       0.27   11.3   4.3        1.9    8.6   4.3    2.3  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> DUF1874  Domain of unknown function (DUF1874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1     0.007        31       5      57 ..      30      86 ..      27      97 .. 0.76
   2 !   10.9   0.2   8.7e-05      0.39      48      76 ..     111     139 ..     108     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.007
                S---GG.B-.SE......EEEEEEE-HHHHH..SSTTEEE----HHHHHHHHHHHT- CS
     DUF1874  5 Nslvlt.lk.eeglykiekitieeakellke..nneefvsaiGHeataellselldv 57
                Ns ++   + ++   + ek+++ e++e+lk+  + e  +  +G + + +++ ++l+ 
  EHT97548.1 30 NSEIIRvETiNSDGTSDEKVSAREFDEILKRidDAECTIIDVGSSNIEQFMVQMLEF 86
                666666333544455679************976556677889999999999999986 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.7e-05
                 HHHHHHHHT-----------B-TT-EEEE CS
     DUF1874  48 aellselldveikvnRieiklekgdkaiv 76 
                 ++ +++lld  i+++Ri+i l++ +k + 
  EHT97548.1 111 INTINNLLDSGIEMERIKIILNQAEKDLE 139
                 789*******************9998765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   4.3e-06     0.019       9     111 ..      13     130 ..      11     151 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-06
                 TSSHHHHHHHHHT......S..TEEESSSTTSSSSEEEEE.EE.....ETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHC.TSEEEEEEETTTTCSH CS
    MMR_HSR1   9 NvGKStLinaltg......e..kaivsdkpgtTrdinegr.vk.....lkgkeielvDtpGliegaseek.glgkaflalee.adlillvvdaseeklk 91 
                 NvGKSt+ ++l++      e  ++++ +  gt  + + +r ++     +++ e++++D+    +   e+      +f+   e  d +l+ v  ++++ +
  EHT97548.1  13 NVGKSTICQTLLKprlensEiiRVETINSDGTSDEKVSAReFDeilkrIDDAECTIIDVGS-SN--IEQFmVQMLEFKGSHElIDYFLIPVTTQDKQQR 108
                 ************87776652445666666666666644432335545577999*****988.22..222234444555545536777777764422222 PP

                 HHHHHHHHHHHH..TTSEEEEE CS
    MMR_HSR1  92 pldeeleellee..akkplilv 111
                 +  +++++ll++  +++++ ++
  EHT97548.1 109 DSINTINNLLDSgiEMERIKII 130
                 3334444444334433333333 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.8e-05     0.079      12      71 ..      13      70 ..       4      78 .. 0.68
   2 ?   -0.3   0.1      0.23     1e+03      29      29 ..     141     141 ..      77     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
      AAA_14 12 rvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflD 71
                 vGK+t++++l+k +l ++++i+ ++  + + ++ ++ + +  ++il+++  ++ ++ ++D
  EHT97548.1 13 NVGKSTICQTLLKPRL-ENSEIIRVETINSDGTSDEKVSaREFDEILKRI--DDAECTIID 70
                59**************.888888877666555333322122234444443..345677777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
      AAA_14  29 k 29 
                 k
  EHT97548.1 141 K 141
                 2 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.3   0.00041       1.9       1      98 [.       5     148 ..       5     228 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00041
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCH.....HTTEB-HHHH....................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.....xxxxxxxxxx....................................... RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlai.....leglendiep....................................... 54 
                 ia+ + +G+vGK+t++ +L++   + + +++ v     ++++++      +       ++                                       
  EHT97548.1   5 IAVLNNSGNVGKSTICQTLLKPRLE-NSEIIRVEtINSDGTSDEKvsareF-------DEilkriddaectiidvgssnieqfmvqmlefkgshelidy 95 
                 79**************999874443.3344333333333333331112221.......22344445566677777777777777777777777777777 PP

                 ...........CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHH CS
                 ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...........dlkrllellealgkkkalllkiagvvlnrvdgeneetllkeale 98 
                             ++++  + + l+ + +  ++ + ++ln  ++++e++++++ + 
  EHT97548.1  96 flipvttqdkqQRDSINTINNLLDSGIE--MERIKIILNQAEKDLEIKKQYSIFM 148
                 7777777666633332222222222222..5556666666666665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1766.67
//
Query:       EHT97549.1  [L=158]
Description: putative transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1380  (0.0769703); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1200.52
//
Query:       EHT97550.1  [L=113]
Description: relaxosome component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.8   0.8      0.031   14.8   0.8    1.5  1  MobC      Bacterial mobilisation protein (MobC)
      0.047   13.9   0.1        1.3    9.3   0.0    2.4  2  MRP_L53   39S ribosomal protein L53/MRP-L53


Domain annotation for each model (and alignments):
>> MobC  Bacterial mobilisation protein (MobC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.8   3.4e-06     0.031       6      22 ..      65      82 ..      62      91 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-06
        MobC  6 gIGnNlNQIAraaN..sgq 22
                + +nN+NQ+A ++N  + +
  EHT97550.1 65 KSSNNINQLALKVNvaH-K 82
                558***********842.2 PP

>> MRP_L53  39S ribosomal protein L53/MRP-L53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.025   2.3e+02       1      12 [.      20      31 ..      20      33 .. 0.84
   2 ?    9.3   0.0   0.00014       1.3       7      39 ..      52      83 ..      50      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.025
     MRP_L53  1 FnPFspnaksaR 12
                F+PF+++ k  +
  EHT97550.1 20 FSPFEKQIKESK 31
                9*****988765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00014
     MRP_L53  7 naksaRlFLsllskppaarnpgckiktkvlpda 39
                ++k +R++L+l +k +++ n+ +++k++v +++
  EHT97550.1 52 EVKDTRQLLYLFNKSSNNINQ-LALKVNVAHKN 83
                6899********888888888.********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 850.56
//
Query:       EHT97551.1  [L=994]
Description: putative relaxase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-15   56.0   0.1      2e-14   53.4   0.0    2.4  2  LPD7      Large polyvalent protein-associated domain 7
    2.5e-05   24.0   2.6    2.5e-05   24.0   2.6    2.4  2  Relaxase  Relaxase/Mobilisation nuclease domain


Domain annotation for each model (and alignments):
>> LPD7  Large polyvalent protein-associated domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1   9.6e+03      60      78 ..     197     215 ..     196     218 .. 0.87
   2 !   53.4   0.0   2.3e-18     2e-14       8      92 ..     653     740 ..     644     742 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
        LPD7  60 eeFkreaweaaaerglevt 78 
                 +eFk ++++ ++e+g++++
  EHT97551.1 197 KEFKLKILQRIQEKGIRTR 215
                 799999*********9987 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 2.3e-18
        LPD7   8 lrdg.vyyf..rdgkpaftDrgdriev.tsddddeavaaalelAqakw.gsltvsGseeFkreaweaaaerglevtyeptdpdlqalrea 92 
                 +r+g v+y   + +k+ f+D+g+ i++  +  ++++va alelAq ++ ++l+++Gs++Fk++++ ++ae+gl+++++  d+++++++e 
  EHT97551.1 653 TRKGhVHYLdkTSDKTLFVDTGKLITMrKNGLSSDSVAVALELAQGRFgSTLNIKGSQKFKDMVVSVVAEKGLDIHFT--DKKMNEALEL 740
                 366776665577779*************7777889*************56**************************88..9999998876 PP

>> Relaxase  Relaxase/Mobilisation nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   2.6   2.8e-09   2.5e-05      53     228 ..      55     260 ..      15     265 .. 0.75
   2 ?   -1.4   0.5      0.16   1.4e+03     168     212 ..     617     661 ..     549     670 .. 0.65

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.8e-09
    Relaxase  53 dkdqvhhiiqSFspgeltpeqineigrel....akklgpgnhqyavatHvD..............kdhlHnHiviNrvnletgkkfren..keayrklr 131
                  +d ++++++SF+++  ++e++ ei +e+    +k+++ +++++ +  H+                 ++H+Hivi+r nl +g+ +++   +++ +k  
  EHT97551.1  55 GQDRYLTFTLSFKEEQIDEEKLSEITQEFksflMKSYTSEEYNFYAEAHIPkiktmedrktgesvDRKPHIHIVIPRKNLLSGNEMNPVgsYKQNEKYL 153
                 68999***********99988888887755555****************9988888889988777678*******************975456777777 PP

    Relaxase 132 kvndelasreglsideksprnrqseaekekae.........knkssykeeirqalkkale.nasdfedlkealkekglelrrktgkkltykltdenq.k 219
                 ++++e  +++++ ++ + +++r + + ++++           + ++ k +i q++++      ++f  l  + +e  +    k ++++  kl++ ++ +
  EHT97551.1 154 EAFQEFINQKYVLESPR-ENMRMTPTGYADMLsrykgdefrAKNKEFKLKILQRIQEKGIrTRQSFYNLVAEYGETKIRNAGKENEYIAVKLDGDKKfT 251
                 77777776666666665.788889999998888888877774444555555555544433245555555555555555555888888888888888888 PP

    Relaxase 220 kvrgsklgk 228
                 +++++ ++ 
  EHT97551.1 252 NMKETIFSD 260
                 887776665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.16
    Relaxase 168 sykeeirqalkkalenasdfedlkealkekglelrrktgkkltyk 212
                  + +++r ++++++    + + + ++l++ +l+ +r +++++ y 
  EHT97551.1 617 RVIDKLRNPVNYSKVAEESRKVVEKHLDASNLYTKRTRKGHVHYL 661
                 344455555555555556666666777777777776666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 6667.13
//
Query:       EHT97552.1  [L=69]
Description: hypothetical protein CKS_5641 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-07   29.5   0.0    5.8e-07   29.2   0.0    1.2  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 
  ------ inclusion threshold ------
      0.052   13.4   0.0      0.054   13.3   0.0    1.2  1  MEDS             MEDS: MEthanogen/methylotroph, DcmR Sensory 


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   6.5e-11   5.8e-07       3      57 ..      10      62 ..       8      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 6.5e-11
                     EEEHHHHHHTHHHHHHHHHHHT-EEEEEETTEEEEEEEEHHHHHHHHH.HHHHHC CS
  PhdYeFM_antitox  3 ivsiseakanlselldeveegeepviItrrGkpvaVlvsleeyerlqelteklls 57
                     +vsi+++++++ e++++ + +   + I ++++pv++ ++++ey  l+ + e+ +s
       EHT97552.1 10 SVSITDFRRRPVEYVKAGNGEA--IAILSNNEPVFYCIPAKEYGELLQELEDAKS 62
                     79**************988877..*******************888775555544 PP

>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.1e-06     0.054      25      55 ..      35      65 ..      14      69 .] 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.1e-06
        MEDS 25 largekvlyvasastldelrealrkagldvd 55
                l+++e+v+y+++a+++ el+++l++a+  + 
  EHT97552.1 35 LSNNEPVFYCIPAKEYGELLQELEDAKSKLK 65
                79*********************99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 523.34
//
Query:       EHT97553.1  [L=313]
Description: replication initiation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-12   46.0   0.0    5.5e-12   45.5   0.0    1.1  1  IncFII_repA  IncFII RepA protein family
  ------ inclusion threshold ------
      0.051   13.5   0.8       0.12   12.3   0.8    1.6  1  Homeobox_KN  Homeobox KN domain


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   6.1e-16   5.5e-12       8     235 ..      49     272 ..      43     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 6.1e-16
  IncFII_repA   8 npsPlftpPkeekkrPafikyalkaakekdvarsellyilklkdvktglilkrerrlnehraralralveallyhlniasglveasveql....sDeC 101
                   + P++  P+  ++ P++++   ++a++   +r++ +  ++ +         rer +   r   l+al++ l+   ++a+  v     q+    s + 
   EHT97553.1  49 CADPKYLRPATFNQLPKVLRDGYHRAQKRRFSRHPYFVHMR-T------NAGRERDFRPERQYLLDALAVLLVSGCDLATFNVALNSSQIckslSPKD 139
                  578*******************************9654444.3......3455555555555555555555555555555555555544400003333 PP

  IncFII_repA 102 GLstvskaGnksitrasrlitefleplGlvkC.ekvWDkilesyiPkiitlteLffvLidvskeklksakkqqlgWinkkLrekGekpitlvearrra 198
                      v    + + +r  r++   le+ Gl++   +  D  +++y+P+ +tlte ff L++v+ + l + + ++l  + + +   Ge  +++  ar+r 
   EHT97553.1 140 SRGEVIPGEEVTASRICRALDL-LENYGLIEPyMRRLDPYTKTYLPRHVTLTEQFFRLLQVNLDLLYKERDERLRAMAEGILAPGE-VMSVKAARQRF 235
                  3333333445678889999865.*******963799************************************************97.589******** PP

  IncFII_repA 199 kekhikkaleyrkkkhalkkkkrkarkleeldekear 235
                   ++++ +al+ r+++   +k+  +  + ++ld+++ +
   EHT97553.1 236 SDEKVAQALKVRRERATEQKRLSRIARSTQLDDRQFQ 272
                  **************99999998888889999998754 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   1.3e-05      0.12      17      38 ..     258     281 ..     247     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
  Homeobox_KN  17 eeLlkeTglsvk..qitnWFINaR 38 
                   ++++ T+l+ +  qi  W+IN+R
   EHT97553.1 258 SRIARSTQLDDRqfQIAAWLINTR 281
                  7899*****999556********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2271.65
//
Query:       EHT97554.1  [L=90]
Description: hypothetical protein CKS_5643 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      0.008   15.4   0.1     0.0089   15.2   0.1    1.1  1  IGPS           Indole-3-glycerol phosphate synthase
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.17   12.2   0.0    1.2  1  Lambda_tail_I  Bacteriophage lambda tail assembly protein I


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   9.9e-07    0.0089      63     122 ..       1      62 [.       1      70 [. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.9e-07
                 ESBSS--HHHHHHHHTTT.-SE.EEEE--CCCC---CCHHHHHHHH-SS-E.EEES---SHH CS
        IGPS  63 liredfdpaeiAkkyeeagAsa.iSVLteekyFqGsledLrevrqavslpv.lrKdFiidey 122
                 +i+ +++  ++Ak  +++  s  +SV+ +e+  qG+++++ + +q ++    ++ d+i ++y
  EHT97554.1   1 MITLNAEQHQQAKLIHDYANSFpVSVIGDEQLLQGCYDYMDAFKQVMDSSSkIQMDYICQQY 62 
                 57889999999*999998444359*********************99876514578888776 PP

>> Lambda_tail_I  Bacteriophage lambda tail assembly protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.17      21      51 ..      24      55 ..       6      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
  Lambda_tail_I 21 eavktleeairalssqldafkellq.rskfav 51
                    +v+  e++++ + + +dafk+ ++  sk ++
     EHT97554.1 24 VSVIGDEQLLQGCYDYMDAFKQVMDsSSKIQM 55
                   57888899***************864445444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 656.63
//
Query:       EHT97555.1  [L=76]
Description: hypothetical protein CKS_5644 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 569.43
//
Query:       EHT97556.1  [L=93]
Description: hypothetical protein CKS_5645 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 695.66
//
Query:       EHT97557.1  [L=106]
Description: hypothetical protein CKS_5646 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 810.60
//
Query:       EHT97558.1  [L=221]
Description: hypothetical protein CKS_5647 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-14   52.6   0.2    1.1e-07   31.4   0.0    2.4  2  MipZ         ATPase MipZ
    1.3e-10   41.5   0.0    3.5e-05   23.8   0.0    2.1  2  AAA_31       AAA domain
    1.1e-08   35.2   0.0    1.3e-08   35.0   0.0    1.1  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    7.1e-06   25.7   0.0    8.9e-06   25.4   0.0    1.1  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.3e-05   22.4   0.0    8.9e-05   21.9   0.0    1.3  1  VirC1        VirC1 protein
    0.00011   21.8   0.1    0.00017   21.1   0.1    1.3  1  ParA         NUBPL iron-transfer P-loop NTPase
     0.0038   16.7   0.1     0.0099   15.4   0.0    1.7  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
  ------ inclusion threshold ------
      0.011   14.9   0.0      0.022   14.0   0.0    1.5  1  ArsA_ATPase  Anion-transporting ATPase
      0.039   13.4   0.0      0.074   12.5   0.0    1.4  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif


Domain annotation for each model (and alignments):
>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   5.5e-11   1.1e-07       2      53 ..       2      53 ..       1      61 [. 0.89
   2 !   19.0   0.0   3.4e-07   0.00068      87     144 ..      67     125 ..      53     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 5.5e-11
                EEEE--SSTTSSHHHHHHHHHHHH.HTTT--EEEEE--TTT-HHHHHHHHHHH CS
        MipZ  2 vivlgnekGGsGksttavhvavaL.lkkGarvaaidldlrqrtlarylenraa 53
                +i +g  kGG Gkst+ +h+ ++L lk+G+rvaa++ d  q++++ +l+ r+ 
  EHT97558.1  2 IILVGSHKGGVGKSTIYIHILMCLiLKSGKRVAALECDD-QHSVKDWLDERRS 53
                799*****************99983589*********96.8999999999976 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEES.SHHHHCCCEEE-S CS
        MipZ  87 aeleelvadleaeldfividtPGsdsalsrlahsladtlvtPlnd.sfvdfdllgkvdp 144
                 +++ +++++l +++df+++d+PG+ s+    + ++ad ++  l+  s ++++ lg v +
  EHT97558.1  67 HDIPAMARKLDKKYDFVLLDAPGRRSPEFSKCLAVADLFISLLDPsSQIEINTLGLVVA 125
                 678889999*******************************9998525788888887755 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.8e-08   3.5e-05       3      44 ..       2      44 ..       1      60 [. 0.90
   2 !   15.7   0.0   5.4e-06     0.011     111     176 ..      73     139 ..      67     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.8e-08
      AAA_31  3 vIaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQana 44
                +I +   KGGvGK+T  + + ++l  k+gk+v   ++D Q + 
  EHT97558.1  2 IILVGSHKGGVGKSTIYIHILMCLIlKSGKRVAALECDDQHSV 44
                789999*****************999**************976 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.4e-06
      AAA_31 111 lekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaea.yaleGleqllktieevkkklnpkle 176
                  +k++++YD++++D+p   +    + L+++d +i  ++++    +++l  ++  +++ + ++n+ l+
  EHT97558.1  73 ARKLDKKYDFVLLDAPGRRSPEFSKCLAVADLFISLLDPSSqIEINTLGLVVADVRQYQASVNKGLK 139
                 57899********************************996558999999999999999999988775 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   6.4e-12   1.3e-08       1     104 [.       3     167 ..       3     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 6.4e-12
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep............................................ 54 
                 i++ s kGGvGK+t+ ++++ +l    g+rV+++ +D q +     ++l +++ +                                            
  EHT97558.1   3 ILVGSHKGGVGKSTIYIHILMCLILkSGKRVAALECDDQHSVK---DWLDERRSQgtvpdvdyyecyhdipamarkldkkydfvlldapgrrspefskc 98 
                 67889************9776666648************6665...46666666688888888**********************************99 PP

                 .................CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS...-TTCHHHHHHHHHHC CS
                 .................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .................dlkrllellealgkkkall..lkiagvvlnrvdgeneetllkealeelkqry 104
                                   +  l+ +++++++ +a     + a +v nr d   +++  +++ ++++++ 
  EHT97558.1  99 lavadlfislldpssqiEINTLGLVVADVRQYQASVnkGLKAVLVMNRCDTHPADEDASNFRRDIEADQ 167
                 999999999999999998888888888888877666777778888888888877777777777766544 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.5e-09   8.9e-06      14     146 ..      12     163 ..       2     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.5e-09
                 SSHHHHHHHHHHHTTSSCHHHHHH.....HHHSTHCHSHHHHHHTSCSSCEEEEEE........TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU  14 hGKtTLtdrLlyktgaiskkgeka.....eeervlDtlkeErergiTiksaaisle........ketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                  GK+T+  ++l+ +   s k ++a     ++++v D+l+e r +g   ++   +++        k  kky + l+D+PG +  s e ++ l+v+D+ + 
  EHT97558.1  12 VGKSTIYIHILMCLILKSGK-RVAalecdDQHSVKDWLDERRSQGTVPDVDYYECYhdipamarKLDKKYDFVLLDAPGRR--SPEFSKCLAVADLFIS 107
                 59***998888554444443.3334777577999***************************997799************99..6999************ PP

                 EEETTTBSTHHHHHHH.......HHHHHTTTEEEEEEESCGST..HHHHHHHHHHH CS
    GTP_EFTU 100 vvdaveGvepqteevl.......rlalkegvpiivfiNKmDrl..kaelkeiveev 146
                 ++d ++ +e +t  ++       +   ++g++ ++++N +D    +++ ++  +++
  EHT97558.1 108 LLDPSSQIEINTLGLVvadvrqyQASVNKGLKAVLVMNRCDTHpaDEDASNFRRDI 163
                 *****998888865431111111455677888*********987744444444443 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.5e-08   8.9e-05       4      96 ..       3      92 ..       1     120 [. 0.73

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.5e-08
       VirC1  4 itfcslkGGaGkttalmglcsal.asdgkrvalfeadenrPltkwkenalrkgawddacevfvadelplleaayeeaegeGfdyaladtrgGss 96
                i + s kGG Gk+t  + +   l    gkrva +e+d+ + ++ w ++   +g+  d       +++p++    +    + +d++l d+ g  s
  EHT97558.1  3 ILVGSHKGGVGKSTIYIHILMCLiLKSGKRVAALECDDQHSVKDWLDERRSQGTVPDVDYYECYHDIPAMARKLD----KKYDFVLLDAPGRRS 92
                6788**********98876555415779******************99999999877655555667777655443....346666666666555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   8.5e-08   0.00017       5      41 ..       2      39 ..       1      57 [. 0.90

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.5e-08
        ParA  5 viavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaD 41
                +i+v S KGGVGKSt+ +++ + L  k+g++v+ l  D
  EHT97558.1  2 IILVGSHKGGVGKSTIYIHILMCLIlKSGKRVAALECD 39
                79***************99888876599*****99988 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.99     2e+03       9      21 ..       8      20 ..       1      38 [. 0.68
   2 !   15.4   0.0     5e-06    0.0099     105     150 ..      69     114 ..      54     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.99
    CBP_BcsQ  9 vRGGvGttsllaa 21
                 +GGvG++++   
  EHT97558.1  8 HKGGVGKSTIYIH 20
                58*****999754 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5e-06
    CBP_BcsQ 105 llaalkelkeqyrwillDlpagasaltrellaladlvllvvepdan 150
                 + a  ++l ++y+++llD p   s+ ++++la+adl ++++ p + 
  EHT97558.1  69 IPAMARKLDKKYDFVLLDAPGRRSPEFSKCLAVADLFISLLDPSSQ 114
                 6677899********************************9998765 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.022       4      52 ..       3      53 ..       1      59 [. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                 EEEE.ESTTSSHHHHHHHHHHH.HHHTTS-EEEEE-STTTHHHHHHTS--B CS
  ArsA_ATPase  4 ilvg.GKGGVGKttvsaatavk.lsekgkkvllistDPAhslsDsfdqklg 52
                 ilvg  KGGVGK+t+   + +  + ++gk+v  +  D  hs+ D +d+  +
   EHT97558.1  3 ILVGsHKGGVGKSTIYIHILMClILKSGKRVAALECDDQHSVKDWLDERRS 53
                 444416*********999887736799******************998655 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05     0.074       8      44 ..       9      46 ..       2      67 .. 0.79
   2 ?   -3.7   0.0       3.3   6.5e+03     168     202 ..     130     165 ..     123     177 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
   Fer4_NifH  8 kGGiGksttsqnlsaal.aemgkkvlivGCDPkaDstr 44
                kGG+Gkst    +++ l  + gk+v  + CD ++    
  EHT97558.1  9 KGGVGKSTIYIHILMCLiLKSGKRVAALECDDQHSVKD 46
                9********9998887625889*********9886555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
   Fer4_NifH 168 yaksggvrl.gGliinsrkvddereliekfaeelgt 202
                 y+ s + +l + l++n  +++  +e +++f ++++ 
  EHT97558.1 130 YQASVNKGLkAVLVMNRCDTHPADEDASNFRRDIEA 165
                 444444444134566655566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1665.84
//
Query:       EHT97559.1  [L=250]
Description: hypothetical protein CKS_5648 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-26   91.0   0.0    1.1e-25   90.4   0.0    1.2  1  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
      0.062   13.4   0.0      0.091   12.9   0.0    1.2  1  GHL6             Hypothetical glycosyl hydrolase 6


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   1.2e-29   1.1e-25       2     170 ..      45     221 ..      44     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.2e-29
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTT...EEEEE....EEECSSSSE.....EEEECT.HHHHHHHHH CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldleng...vilvh....eregKgske.....ravpls.eealellke 82 
                      +l e e+  lla   +  ++r+++++ ll++tG+R sE+l+L+ +d+++ ++   + +v     +++gK ++      r vpl  e  +  l++
       EHT97559.1  45 YLLEPEITVLLAQGFT--DLRKRMFFDLLWNTGARLSEALALTPEDVHTGERwpsRPFVSlmtlKQQGKPGRPpkdtlRDVPLFdEGFTLRLRD 136
                      6778888888877777..9******************************987333567767666666666666888889999887778888888 PP

                      HHHHHCHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S.....SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  83 llskaleeaeksellfaskrgkplsrqtvrkafkraveeagie.....kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                       l++           f  kr +p+++ t+r +++ av + + e      p+tpHt+Rhsf+++Ll  g+ + +++kllGH++ ++tqiY +v+
       EHT97559.1 137 HLDTF--------CRFRTKRIWPVTDDTIRNWLRDAVTRCEREgvrfsIPVTPHTFRHSFSMHLLWCGIEPLTLKKLLGHRDFKSTQIYLDVL 221
                      88888........9*************************9999999*99****************************************9986 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05     0.091      30      83 ..     144     195 ..     131     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
        GHL6  30 YrtkldfvtehpklkrdllkelvkachregikvvvrvdfskaderiyeqhpeWa 83 
                 +rtk+ + +      r+ l+++v+ c+reg+++ + v+     +++   h  W+
  EHT97559.1 144 FRTKR-IWPVTDDTIRNWLRDAVTRCEREGVRFSIPVTPH-TFRHSFSMHLLWC 195
                 67775.577788889******************9999988.5556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 2119.01
//
Query:       EHT97560.1  [L=83]
Description: hypothetical protein CKS_5649 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       152  (0.00847788); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 659.72
//
Query:       EHT97561.1  [L=349]
Description: D12 class N6 adenine-specific DNA methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-23   81.3   0.0    1.3e-22   80.7   0.0    1.3  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
  ------ inclusion threshold ------
      0.075   13.1   0.3       0.22   11.6   0.3    1.8  1  HTH_3            Helix-turn-helix


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   1.5e-26   1.3e-22       1     220 [.      16     223 ..      16     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 1.5e-26
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCH..SHHHHHHHHH.TCTTGGC.TSHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykalikn..nveelikelekllekeelenereyfyel 92 
                      + G+K++l++ I++++pk  ++tfv++F G+gaV +   +  k  + nD+n++  +l++ ++ +  +++el+ +l+    ++  + +re+f   
       EHT97561.1  16 WFGSKSQLVKKIVSHFPK--HQTFVDVFGGSGAVLLGK-RPSKVEVYNDLNKKMASLFR-VLSDkdKTRELVRRLQ----LT--PYSREEFQLA 99 
                      99***************5..77*************887.45666799************.8887445555555555....32..3489****** PP

                      HHHHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S CS
  MethyltransfD12  93 reefnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPP 186
                      r++  +  d+i+ a+  +  ++   ++  g++ ++  +  +  y a  ++     ++l +++++++ ++ie+   ++vl +++  + ++YlDPP
       EHT97561.1 100 RSSVEEERDEIELAR-LMIVIQRQSHGGFGKQWSYCIDAPAAGYSASVRKFHAGVDRLIDVTHRIRRTQIENLPWEDVLSRYDRTGTLFYLDPP 192
                      944442236666555.588999999**********999999999999998566689************************************** PP

                      -T.S...TS--GGGG.CS-HHHHHHHHHHHHHH. CS
  MethyltransfD12 187 Ynprqytanytlyetlafsdedevrlaevlksls 220
                      Y p  +t+   +ye++++  +d++r  ev+ +l+
       EHT97561.1 193 YVP--ETRVSGGYEHEMTL-ADHARMVEVMLQLK 223
                      ***..999999**996655.55559999988886 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.4e-05      0.22       4      28 ..     316     340 ..     315     341 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                 HHHHTTHHHHHHHHHHTSSHHHHHH CS
       HTH_3   4 lRkqlglsqeeLAeklGvsrstisr 28 
                 +R  ++ s++e+A+ +G+sr +isr
  EHT97561.1 316 KRIGKKVSKAEVARITGISRVQISR 340
                 5788999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2538.01
//
Query:       EHT97562.1  [L=397]
Description: hypothetical protein CKS_5651 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0092   15.2   0.0      0.014   14.6   0.0    1.2  1  Phage_cap_E  Phage major capsid protein E


Domain annotation for each model (and alignments):
>> Phage_cap_E  Phage major capsid protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     8e-07     0.014     109     206 ..     148     237 ..     126     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8e-07
  Phage_cap_E 109 dlrdkidrteEwmraqaLkggkldadGetlydlfvdFgvtakhkiefdlgtakWdadvradpledlrkwednlakgggstpvralmgkkffdalikhk 206
                  d +++  + + +mr+  + g ++ a G  +  + + Fg  + +  e+++ ++k       +p +   +w ++  +++++tpv a m +  ++ali +k
   EHT97562.1 148 DCDTNTYLMIDAMRMKGMEGYIVYAPGHAFLAWKDSFGNYNYQ--ETTSYNNK----G--KPADLSIDWYTKTIDKSYYTPVNAQMAEQIYNALIYDK 237
                  556667777889*****************************99..33444444....4..9*********************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3027.43
//
Query:       EHT97563.1  [L=37]
Description: hypothetical protein CKS_5652 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 315.04
//
Query:       EHT97564.1  [L=109]
Description: hypothetical protein CKS_5653 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.023   14.7   0.0    1.3  1  HTH_3     Helix-turn-helix
      0.019   15.3   0.0      0.032   14.6   0.0    1.3  1  HTH_31    Helix-turn-helix domain
      0.071   13.5   0.1       0.13   12.8   0.1    1.3  1  HTH_26    Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.8e-06     0.023      11      52 ..      22      63 ..      12      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-06
                HHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52
                s  ++A+++ +s + + +i+ G++ ++l+    l+++L++s+
  EHT97564.1 22 SYNKIAAATHISSQRLKNIMTGRADITLRERDILCEYLDISP 63
                66789**********************************998 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.4e-06     0.032      12      58 ..      18      63 ..      16      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.4e-06
      HTH_31 12 raGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                r++ s    A+++++s  +l  +++Gr +  +++  + l+++l+ +p
  EHT97564.1 18 RSRHSYNKIAAATHISSQRLKNIMTGRAD-ITLRERDILCEYLDISP 63
                55678999********************7.************99875 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.1e-05      0.13      12      54 ..      22      63 ..      12      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
      HTH_26 12 tkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctp 54
                ++++ a +t is++ l+++ +g++  ++l + d +C++L+++p
  EHT97564.1 22 SYNKIAAATHISSQRLKNIMTGRA-DITLRERDILCEYLDISP 63
                788999*****************5.***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 812.17
//
Query:       EHT97565.1  [L=86]
Description: hypothetical protein CKS_5656 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 640.56
//
Query:       EHT97566.1  [L=66]
Description: hypothetical protein CKS_5657 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00048   20.3   0.0    0.00056   20.1   0.0    1.1  1  DUF3408   Protein of unknown function (DUF3408)
  ------ inclusion threshold ------
      0.053   13.6   0.0      0.055   13.6   0.0    1.0  1  RepB      RepB plasmid partitioning protein


Domain annotation for each model (and alignments):
>> DUF3408  Protein of unknown function (DUF3408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.3e-08   0.00056      81     129 ..      11      62 ..       4      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.3e-08
     DUF3408  81 kaRksvYisrelheklarIvrvlgerk...msvsayvdnilrhHLeeYkeeI 129
                 k   ++Y+s   ++kl++Iv+ +g ++   m  sa+v  ++++H e+ k++I
  EHT97566.1  11 KYSNNIYVSPGPRQKLEEIVTEIGYKQgkvMAASAFVRYLIENHGEQAKDDI 62 
                 44479*******************655334889**************99999 PP

>> RepB  RepB plasmid partitioning protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.1e-06     0.055     129     181 ..       1      57 [.       1      60 [. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.1e-06
        RepB 129 peaksarlq.tavlaiiedeg.rqtLalkaaeay..lsrLlfnvrfvrylarnldel 181
                 ++++s r+q + ++ i+ + g rq+L+  + e    + ++++ ++fvryl++n+ e+
  EHT97566.1   1 MASNSNRQQkKYSNNIYVSPGpRQKLEEIVTEIGykQGKVMAASAFVRYLIENHGEQ 57 
                 56777888846677899999******866666541277***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 469.60
//
Query:       EHT97567.1  [L=594]
Description: VirB4 family type IV secretion complex ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-18   67.8   0.0    2.1e-18   67.2   0.0    1.2  1  CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV
  ------ inclusion threshold ------
      0.085   12.3   0.0       0.14   11.6   0.0    1.3  1  NEL             C-terminal novel E3 ligase, LRR-interacting


Domain annotation for each model (and alignments):
>> CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV transporter system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   2.3e-22   2.1e-18       3     199 ..     158     354 ..     156     358 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 2.3e-22
  CagE_TrbE_VirB   3 Lseree.rellfselleflnflinGenepvklpsgsmlldeliatskvpfgkdkfiirtakd..ekfasilsikeYpeetrsslldsllsldiel 94 
                     L+ +e+  + +fs++  + ++linG+++ + l +  +l+d++i  s + f+    + + +++   ++a  +++++Yp++t +++ d  l+ ++ +
      EHT97567.1 158 LGVEEDaAGSVFSQVGRYVSLLINGKEQDILLSDT-RLSDAVID-SVTNFAPYDYVENRPNSggVRYATTYDLRDYPSKTVPGMWDEALEEQFDF 250
                     66666667889***********************9.99******.99999999999999999899****************************** PP

  CagE_TrbE_VirB  95 iitesfskiskqkalsklkkkqsrllsiedkaksqiteledlidevasgdvalGayhlslvlfaedkekLdkavseatkllnakGivavketigm 189
                      ++++f +  ++k +  ++k q   l++ ++ ++q+ +l+d+++ +++gd  +G yh  l+++ ++ +k  ++ ++  ++  ak     + t+  
      EHT97567.1 251 SLVQTFMFEDRNKSKASFTK-QAVDLTSAEGETKQTKALDDAVQDITQGDKLFGRYHAALMVYGDTPQKAIDNGAMMDSIFTAKDTRFIRSTVTN 344
                     *******************5.6666666688999************************************************************* PP

  CagE_TrbE_VirB 190 epaFfsqlPg 199
                     e+ ++s +Pg
      EHT97567.1 345 EDTYYSLFPG 354
                     *********8 PP

>> NEL  C-terminal novel E3 ligase, LRR-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.6e-05      0.14      56     102 ..     488     534 ..     455     543 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
                 HHHHHT-HHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHH CS
         NEL  56 LqaaaqdpeLReqlfavAeeapasCeDrvalafsnlelavlvhqaed 102
                 L +++++peLR+qlf+++ +    C+D+ +   +    avl+h++++
  EHT97567.1 488 LFQLEDSPELRNQLFDMVHTMAGVCSDAEENQIKHSIEAVLAHSVVE 534
                 6799***********************99988877777778888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4287.22
//
Query:       EHT97568.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97568.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97568.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97568.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97568.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97568.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97568.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97568.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97568.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97568.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97568.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97568.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97568.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97568.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97568.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97568.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97568.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97568.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2152.28
//
Query:       EHT97569.1  [L=183]
Description: helicase superfamily I ATP-dependent exonuclease, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-20   73.7   0.3      2e-20   73.3   0.3    1.2  1  AAA_30         AAA domain
    1.1e-08   35.5   0.0    1.6e-08   35.0   0.0    1.2  1  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.056   13.2   0.0      0.085   12.6   0.0    1.3  1  AAA_11         AAA domain
       0.12   12.2   0.1        5.1    6.9   0.1    2.2  2  Helicase_RecD  Helicase
       0.12   11.8   0.0       0.16   11.4   0.0    1.2  1  DUF3396        Protein of unknown function (DUF3396)
       0.14   12.4   0.0       0.44   10.8   0.0    1.9  2  AAA_22         AAA domain
       0.15   11.2   0.0       0.81    8.8   0.1    2.1  2  PIF1           PIF1-like helicase


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.3   7.9e-24     2e-20       2     101 ..      76     183 .]      75     183 .] 0.91

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 7.9e-24
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelgieastiakllkrlk.....grarlepg.t 90 
                 l+a+Q+aa + +l+s dr+++++G+AG GKtt  ka+ +a+e+       +v+glApt++a ++++ ++g++a+t+++++ + +     g ++ + g t
  EHT97569.1  76 LTAGQQAATRMVLESADRFTAVQGYAGVGKTTQFKAMLAAMETLPedlrPEVVGLAPTHRAVEEMK-SVGVRAQTLESFIWEDRqarmnG-EKPDYGnT 172
                 789**********************************9999999658989***************9.99***********8777999963.4555566* PP

      AAA_30  91 llivDEagmvd 101
                 l+++DEa+m++
  EHT97569.1 173 LFLIDEASMIG 183
                 *********86 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   6.1e-12   1.6e-08       7     114 ..      89     182 ..      80     183 .] 0.80

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 6.1e-12
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeeel 105
                 +++++  +v + +G GKT+  k+++a ++ l +    e++ +a+t+rA++e++ ++   g++a+T+ ++  + ++d++  + +      e+ +   ++l
  EHT97569.1  89 ESADRFTAVQGYAGVGKTTQFKAMLAAMETLPEDLRPEVVGLAPTHRAVEEMK-SV---GVRAQTLESF--I-WEDRQARMNG------EKPDY-GNTL 173
                 67788999***********************9998899**************9.44...7*******99..5.5665522222......23333.5569 PP

      AAA_19 106 livDEfqdv 114
                 +++DE++++
  EHT97569.1 174 FLIDEASMI 182
                 ********8 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-05     0.085       3      70 ..      77     140 ..      75     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.3e-05
      AAA_11   3 ndsqreaiksalsese.itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDel 70 
                  + q+ a + +l++ + +t +qG  G gKT+   ++l+++ +       ++  p++   ap++ Av e+
  EHT97569.1  77 TAGQQAATRMVLESADrFTAVQGYAGVGKTTQFKAMLAAM-E----TLPEDLRPEVVGLAPTHRAVEEM 140
                 67899999999999989**************999999999.2....33466777777778888888776 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.002       5.1     116     140 ..      85     114 ..      65     128 .. 0.67
   2 ?    3.1   0.0      0.03        78      91     102 ..     166     182 ..     130     183 .] 0.62

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
  Helicase_RecD 116 rvvl.....atTvhGYEGtGrgfslkflkq 140
                    r+vl      t+v+GY+G G++ ++k + +
     EHT97569.1  85 RMVLesadrFTAVQGYAGVGKTTQFKAMLA 114
                    44446666679**********999887654 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.03
  Helicase_RecD  91 a.....dllvvDEAAai 102
                    +      l ++DEA++i
     EHT97569.1 166 KpdygnTLFLIDEASMI 182
                    345555789*******9 PP

>> DUF3396  Protein of unknown function (DUF3396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.3e-05      0.16      17      63 ..      58     106 ..      43     130 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.3e-05
     DUF3396  17 dndlsvlsftlPteyleeq..GperfealllelaeeLpvesGyaGlafn 63 
                 +++++ l  ++P +yl+    G +   +++le a+++ +++GyaG +  
  EHT97569.1  58 KGSVTPLMASVPEQYLTGLtaGQQAATRMVLESADRFTAVQGYAGVGKT 106
                 6677888999******97656************************9865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       5.4   1.4e+04      48      63 ..      40      57 ..      37      62 .. 0.67
   2 ?   10.8   0.0   0.00017      0.44       4      43 ..      91     128 ..      87     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.4
      AAA_22 48 psst..sskdllrellra 63
                p+st  + k +lr++++ 
  EHT97569.1 40 PKSTfeTEKAILRHIAEG 57
                555556777888887765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43 
                  +++++v G +G+GKTt  + +l   +    +e+ rpevv
  EHT97569.1  91 ADRFTAVQGYAGVGKTTQFKAMLAAME--TLPEDLRPEVV 128
                 57899***************9998863..34444666666 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.15   3.9e+02      94     132 ..      19      57 ..      12      64 .. 0.80
   2 ?    8.8   0.1   0.00032      0.81       4      48 ..      78     118 ..      75     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.15
                 CCCHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT- CS
        PIF1  94 sklaellkktsliiwDEapmverecfealdrtlrdilke 132
                 s++ +++k+ +li +    m+ ++ fe+  ++lr i + 
  EHT97569.1  19 SEINRQVKDGELIRLEAGLMLPKSTFETEKAILRHIAEG 57 
                 556667777777778778899999999999999999875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00032
                 HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC CS
        PIF1   4 eeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs 48 
                 + Q+++ + +    l++  ++  v+G++G gKt  +ka+l+++++
  EHT97569.1  78 AGQQAATRMV----LESADRFTAVQGYAGVGKTTQFKAMLAAMET 118
                 5555555555....566778899****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1387.23
//
Query:       EHT97570.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT97570.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97570.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97570.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97570.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97570.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97570.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT97570.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97570.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT97570.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97570.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97570.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT97570.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97570.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT97570.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97570.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT97570.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT97570.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT97570.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97570.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT97570.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97570.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT97570.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97570.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97570.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97570.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97570.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97570.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97570.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97570.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT97570.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT97570.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT97570.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT97570.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT97570.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97570.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97570.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 3453.00
//
Query:       EHT97571.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97571.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 908.12
//
Query:       EHT97572.1  [L=99]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   40.4   0.0    5.1e-10   39.5   0.0    1.5  2  HTH_Tnp_1  Transposase
     0.0054   16.5   0.0     0.0072   16.1   0.0    1.2  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.028   14.5   0.0      0.044   13.9   0.0    1.3  1  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   8.5e-14   5.1e-10      21      65 ..       2      52 ..       1      63 [. 0.83
   2 ?   -2.7   0.0       1.3   7.5e+03      36      50 ..      83      97 ..      81      98 .. 0.62

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 8.5e-14
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae......feltalee 65
                +pg+sv+++Ar+ ++++n L++Wrr y+++++ +pa+       +lta e 
  EHT97572.1  2 QPGVSVAQLARENNINDNLLFNWRRRYQQELSGTPAStpalipVALTATER 52
                89***********************************87777544444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
   HTH_Tnp_1 36 spnqLykWrrqyreg 50
                 p+ L + +r+ ++g
  EHT97572.1 83 TPELLQTLIREMQGG 97
                566677777766654 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0072      17      43 ..       4      31 ..       1      39 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryr.e 43
                G sv++ Are +++ + + +w++ry+ e
  EHT97572.1  4 GVSVAQLARENNINDNLLFNWRRRYQqE 31
                89***********************523 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.3e-06     0.044      12      39 ..       4      31 ..       1      33 [. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-06
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeeg 39
                G+sv+++Are +i+   +  W++ry+++
  EHT97572.1  4 GVSVAQLARENNINDNLLFNWRRRYQQE 31
                89***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 807.61
//
Query:       EHT97573.1  [L=304]
Description: IS4321L family transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-20   71.7   0.2    9.8e-20   70.7   0.2    1.6  1  Transposase_20  Transposase IS116/IS110/IS902 family
    2.6e-19   69.6   0.1    1.2e-18   67.4   0.0    1.9  2  DEDD_Tnp_IS110  Transposase
  ------ inclusion threshold ------
       0.11   12.1   0.9        9.2    5.8   0.0    2.4  2  DUF4635         Domain of unknown function (DUF4635)


Domain annotation for each model (and alignments):
>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.2   1.6e-23   9.8e-20       2      78 ..     210     286 ..     209     295 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.6e-23
  Transposase_20   2 elLesipGiGpvtaaallaeigdlrrfksakqlaayaGlapvenqSGkkkrrgriskrGnrrlRraLyeaAlaaira 78 
                     ++L sip +G++ta+++  eigd +++ s++++aa  Gl+p+++++G++    +iskrGn+++R++L+++A++ i++
      EHT97573.1 210 QRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQK 286
                     689************************************************999*****************998854 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   2.1e-22   1.2e-18       1     153 [.       7     147 ..       7     149 .. 0.89
   2 ?   -0.7   0.2      0.19   1.1e+03     125     151 ..     178     204 ..     161     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 2.1e-22
  DEDD_Tnp_IS110   1 vGiDvakdkhdacvidaegkvllservpndeeglealleklaakagevlvvveatghygallvaflleagitvvvvnplavkrlrklylrkaKtD 95 
                     +GiD +k+++++ ++d+ gk + +++++  +     l+e  +a+   +++++ea g  +  ++  l+e g +  ++ p    ++ + + +++K+D
      EHT97573.1   7 IGIDLGKNSFHIHCQDRRGKAVYRKKFTRPK-----LIEF-LATCPATTIAMEACGGSHF-MARKLEELGHSPKLISP----QFVRPFVKSNKND 90 
                     7**************************9877.....5555.566899************7.46677888888666666....555566789**** PP

  DEDD_Tnp_IS110  96 akDAkvIAdllrdrgrlrplklddeayaeLrqltrqredlvkertrlknrlralLdqv 153
                      +DA+ I++++  r ++r++++++e  +++r l r re+lv++ ++++n+++a+L ++
      EHT97573.1  91 FVDAEAICEAAS-RPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEF 147
                     ************.*****************************************9875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.19
  DEDD_Tnp_IS110 125 LrqltrqredlvkertrlknrlralLd 151
                     L +l ++++ lv+++ +l  +l+  Ld
      EHT97573.1 178 LLKLQQHYHYLVEQIKDLESQLKRKLD 204
                     456778888888888888888888877 PP

>> DUF4635  Domain of unknown function (DUF4635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.9    0.0076        46      95     127 ..     174     206 ..     163     211 .. 0.87
   2 ?    5.8   0.0    0.0015       9.2      80     116 ..     265     301 ..     254     303 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0076
     DUF4635  95 lhvflekleeevreleqlvrdleeWldallgdl 127
                 l  +l kl++  + l ++++dle+ l   l++ 
  EHT97573.1 174 LSQLLLKLQQHYHYLVEQIKDLESQLKRKLDED 206
                 6778999*******************9999875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0015
     DUF4635  80 seePikvlrkWlkenlhvflekleeevreleqlvrdl 116
                 s+   k +r+ l +   vf++kle++  +l   vrdl
  EHT97573.1 265 SKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRDL 301
                 56677999****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2399.46
//
Query:       EHT97574.1  [L=320]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-30  103.6   3.0    1.2e-29  103.2   3.0    1.2  1  LysR_substrate  LysR substrate binding domain
    3.2e-21   75.0   0.2    3.2e-21   75.0   0.2    2.5  4  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.039   13.8   0.4       0.15   12.0   0.4    2.0  1  MarR_2          MarR family
        2.6    8.1   9.4        4.2    7.5   0.1    2.9  3  DUF2065         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   3.0   2.7e-33   1.2e-29       3     207 ..      98     303 ..      96     305 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.7e-33
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargep 95 
                       +g+Lrig +p++++ llp+++   r   P++++++ e +s  l+  +  ++lDl++ +++   e+++l+++ L+e++l++va  +hpLa++++
      EHT97574.1  98 AAHGELRIGGTPAMCAGLLPRIIGTVRSDRPRLQFHVAELESGKLASEVVGRSLDLGLGREHAvrESHDLVFEGLFEDRLFVVAGSQHPLAERRS 192
                     678******************************************************************************************** PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                     +sle+  ++ ++l + + +   +l+  ++++gl++ ++a+++ s+   ++l+a G  ++++  s++r   a   l++lp++  p   ++++++ k
      EHT97574.1 193 ISLEETLRHHWVL-PTEGAVTAHLQGEFGRQGLAIpEAAITTMSMLVRCELIATGSFLTVMYGSVLRFGNAPKSLRVLPVDL-PSGIPVGVIRLK 285
                     *************.5577788889999999999888******************************99999999**999998.888********* PP

                     TCCCHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflrea 207
                     +r l p ++ fi++ r+ 
      EHT97574.1 286 NRTLAPSAEMFIQASRRM 303
                     *************99975 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.2   7.2e-25   3.2e-21       1      60 []      13      72 ..      13      72 .. 0.98
   2 ?   -2.8   0.0       1.4   6.5e+03      41      50 ..     173     182 ..     170     197 .. 0.56
   3 ?   -2.7   0.0       1.3   5.9e+03      36      46 ..     194     204 ..     183     212 .. 0.61
   4 ?   -3.1   0.1       1.8   7.9e+03      18      32 ..     298     312 ..     295     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 7.2e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr lrl++ava++gs+ +AA e gl+qpa+sr+i++LE ++gv+Lf+Rt+rg+ +T++Ge
  EHT97574.1 13 LRELRLLLAVARSGSILKAANEIGLTQPALSRSIADLEGAFGVRLFDRTNRGVAPTPHGE 72
                799*******************************************************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 HTS-SEEESS CS
       HTH_1  41 lgvpLfeRtg 50 
                 ++++Lf+  g
  EHT97574.1 173 FEDRLFVVAG 182
                 5566665433 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.3
                 HHHHHHTS-SE CS
       HTH_1  36 rLEeelgvpLf 46 
                 +LEe l + ++
  EHT97574.1 194 SLEETLRHHWV 204
                 45666665555 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.8
                 HHHHHHTS-HHHHHH CS
       HTH_1  18 rAAeeLglsqpavsr 32 
                 +A +++  s p++s+
  EHT97574.1 298 QASRRMVRSMPSLSA 312
                 799999999999986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   3.3e-05      0.15       3      47 ..      11      51 ..      10      52 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                +t+ ++r+L+a++r++    ++   a + gl+++a+sr +++L+ 
  EHT97574.1 11 VTLRELRLLLAVARSG----SILKAANEIGLTQPALSRSIADLEG 51
                6999***********9....9*********************986 PP

>> DUF2065  Uncharacterized protein conserved in bacteria (DUF2065)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00094       4.2      27      51 ..      92     116 ..      85     119 .. 0.90
   2 ?   -2.5   0.2       1.2   5.5e+03       9      15 ..     167     173 ..     167     173 .. 0.87
   3 ?    5.6   0.9    0.0036        16      22      40 ..     299     317 ..     295     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00094
     DUF2065  27 lrqlaelpdrqlRliGlvlmllGlv 51 
                 lr la +  + lR+ G  +m++Gl+
  EHT97574.1  92 LRALADAAHGELRIGGTPAMCAGLL 116
                 688999999**************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
     DUF2065   9 lviEGll 15 
                 lv+EGl+
  EHT97574.1 167 LVFEGLF 173
                 8****95 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0036
     DUF2065  22 rwrralrqlaelpdrqlRl 40 
                 + rr++r++ +l+ +qlR+
  EHT97574.1 299 ASRRMVRSMPSLSASQLRR 317
                 679***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2571.02
//
Query:       EHT97575.1  [L=96]
Description: cupin 2 conserved barrel domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-18   65.4   0.2    3.9e-18   64.9   0.2    1.3  1  Cupin_2          Cupin domain
    2.1e-08   33.9   0.0    3.2e-08   33.3   0.0    1.3  1  Cupin_1          Cupin
      1e-06   28.7   0.1    1.2e-06   28.5   0.1    1.1  1  AraC_binding     AraC-like ligand binding domain
    5.3e-06   26.0   0.0    7.4e-06   25.6   0.0    1.3  1  Cupin_3          Protein of unknown function (DUF861)
    0.00057   19.8   0.2      0.001   18.9   0.2    1.5  1  Cupin_7          ChrR Cupin-like domain
      0.001   18.8   0.0     0.0011   18.7   0.0    1.1  1  Cupin_6          Cupin
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.028   14.3   0.0    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
      0.074   12.7   0.0      0.094   12.4   0.0    1.1  1  DMSP_lyase       Dimethlysulfonioproprionate lyase
      0.083   12.5   0.0      0.091   12.4   0.0    1.1  1  3-HAO            3-hydroxyanthranilic acid dioxygenase
       0.19   11.9   0.0       0.26   11.5   0.0    1.2  1  ARD              ARD/ARD' family


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.2   2.2e-21   3.9e-18       3      69 ..      14      81 ..      12      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 2.2e-21
                EEEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEEEEE-SSS.-EEEEE CS
     Cupin_2  3 velppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHrfrNtgde.parllv 69
                v+++pG+   +h+Hp +  +fyVl+G+ +++  + e+v+l++Gds+++pagt H + N++ +  +r+l 
  EHT97575.1 14 VKYEPGGINRRHYHPAA-VTFYVLSGTPVFQeEGKEPVTLKPGDSLLVPAGTTHSHWNPSRTqGVRWLE 81
                689**************.*************78888************************998999986 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.8e-11   3.2e-08      33     119 ..       9      88 ..       2      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.8e-11
                 EEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT CS
     Cupin_1  33 isaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfdtnnpg 119
                  ++  v +epgg++  hyh  a+  +yvl G+      ++++   ++  +l++Gd + vPag  h + n   +++v +  f ++ +g
  EHT97575.1   9 FIVIDVKYEPGGINRRHYH-PAAVTFYVLSGTPV----FQEE--GKEPVTLKPGDSLLVPAGTTHSHWNPSRTQGVRWLEFIVAERG 88 
                 56778899***********.999********877....7776..577778****************************999887776 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   6.5e-10   1.2e-06      17      76 ..      23      82 ..       7      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.5e-10
                  EEETT-SEEEEEEEEE-EEEEETTEE.EEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE CS
  AraC_binding 17 pphvhdeyvihyvteGtgrlrlngrt.ydlgpGdlfLlppgepHdyesdsedgweyrwlyf 76
                  ++h h+ +v  yv++Gt  ++ +g++ + l+pGd +L+p g+ H+ +  s+     rwl+f
    EHT97575.1 23 RRHYHPAAVTFYVLSGTPVFQEEGKEpVTLKPGDSLLVPAGTTHSHWNPSR-TQGVRWLEF 82
                  68******************7777777********************9997.777777766 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.1e-09   7.4e-06      25      61 ..      28      65 ..      14      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.1e-09
                S.EEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEE CS
     Cupin_3 25 e.dEfcyileGevkvtpeggetvelraGDlvvlpkgls 61
                    ++y+l+G   + +eg e+v+l++GD++ +p+g++
  EHT97575.1 28 PaAVTFYVLSGTPVFQEEGKEPVTLKPGDSLLVPAGTT 65
                446689***********99999**************94 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   5.7e-07     0.001      29      79 ..      14      69 ..       2      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.7e-07
                EEE-TTEE---EE-TT-EEEEEEEEE..EEETTEEE...ETTEEEEE-TT-EE--E CS
     Cupin_7 29 vryapgsafsahkHpggeeilVLeGv..fsdeegdy...paGsylrnppgsshapv 79
                v+y+pg   ++h Hp+++ ++VL+G+  f++e ++    + G+ l+ p g++h+ +
  EHT97575.1 14 VKYEPGGINRRHYHPAAVTFYVLSGTpvFQEEGKEPvtlKPGDSLLVPAGTTHSHW 69
                9************************6548887665344489999999999999765 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.4e-07    0.0011      34      72 ..      30      67 ..      14      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.4e-07
     Cupin_6 34 lalhvvlrGscwlidpasgepvrLsagdvvllpggephv 72
                +  + vl+G+   + ++++epv+L++gd +l+p g++h 
  EHT97575.1 30 AVTFYVLSGTPVFQ-EEGKEPVTLKPGDSLLVPAGTTHS 67
                56678999***9*9.55479***************9996 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.028      70     128 ..      14      74 ..       1      89 [. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
  MannoseP_isomer  70 vkPgeklslqkhhhrae.hWvvvkGtakvtvd.devlllkenestyiplgaihrlenpGki 128
                      vk +     ++h+h a   + v++Gt   + + +e ++lk  +s  +p+g++h+  np ++
       EHT97575.1  14 VKYEPGGINRRHYHPAAvTFYVLSGTPVFQEEgKEPVTLKPGDSLLVPAGTTHSHWNPSRT 74 
                      44444445678999765278999***998876156689*****************999875 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.2e-05     0.094     110     153 ..      24      67 ..      18      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.2e-05
  DMSP_lyase 110 dHhhaaeelYlvlsggaefrqgeaewlsrgiGevifnepgikha 153
                  H h+a+ +++vlsg  +f+++++e +  + G+++  + g  h 
  EHT97575.1  24 RHYHPAAVTFYVLSGTPVFQEEGKEPVTLKPGDSLLVPAGTTHS 67 
                 59**********************************99999995 PP

>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-05     0.091      40     103 ..      19      76 ..       6      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
                 -SSB--S-EEE-SS-EEEEEEES-EEEEEEETTCCCEEEE-TTEEEEE-TT--EEEEE-TT-EE CS
       3-HAO  40 GGPnerkdyhleegeeffyqkkGdmvlkvldegkardivireGeifllParvphsPqrfadsvG 103
                 GG n+r   h++++   fy + G  v++  +eg ++ + ++ G++ l+Pa   hs    + + G
  EHT97575.1  19 GGINRR---HYHPAAVTFYVLSGTPVFQ--EEG-KEPVTLKPGDSLLVPAGTTHSHWNPSRTQG 76 
                 444443...66688999******98763..555.679*****************9766665555 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.26      87     133 ..      24      66 ..      20      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
         ARD  87 EhlhedeeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyh 133
                  h h  +   ++++Gt +F+ + k+     v +++GD +++Pag+ h
  EHT97575.1  24 RHYHPAAVTFYVLSGTPVFQEEGKEP----VTLKPGDSLLVPAGTTH 66 
                 68899999999999999998666664....689************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 735.54
//
Query:       EHT97576.1  [L=334]
Description: IS4321L family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-20   71.7   0.1    1.1e-19   70.5   0.1    1.7  1  Transposase_20  Transposase IS116/IS110/IS902 family
    1.3e-19   70.6   0.2    1.3e-18   67.3   0.0    2.5  3  DEDD_Tnp_IS110  Transposase
  ------ inclusion threshold ------
      0.079   13.0   0.5       0.14   12.2   0.5    1.3  1  MCRS_N          N-terminal region of micro-spherule protein
       0.18   11.3   1.4        9.7    5.7   0.0    2.4  2  DUF4635         Domain of unknown function (DUF4635)


Domain annotation for each model (and alignments):
>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   2.4e-23   1.1e-19       2      78 ..     210     286 ..     209     296 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 2.4e-23
  Transposase_20   2 elLesipGiGpvtaaallaeigdlrrfksakqlaayaGlapvenqSGkkkrrgriskrGnrrlRraLyeaAlaaira 78 
                     ++L sip +G++ta+++  eigd +++ s++++aa  Gl+p+++++G++    +iskrGn+++R++L+++A++ i++
      EHT97576.1 210 QRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQK 286
                     689************************************************999*****************998854 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0     3e-22   1.3e-18       1     153 [.       7     147 ..       7     149 .. 0.88
   2 ?   -0.8   0.3      0.27   1.2e+03     125     151 ..     178     204 ..     158     205 .. 0.77
   3 ?   -1.1   0.0      0.33   1.5e+03      22      68 ..     282     327 ..     275     334 .] 0.71

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3e-22
  DEDD_Tnp_IS110   1 vGiDvakdkhdacvidaegkvllservpndeeglealleklaakagevlvvveatghygallvaflleagitvvvvnplavkrlrklylrkaKtD 95 
                     +GiD +k+++++ ++d+ gk + +++++  +     l+e  +a+   +++++ea g  +   +  l+e g +    + l++ ++ + + +++K+D
      EHT97576.1   7 IGIDLGKNSFHIHCQDRRGKAVYRKKFTRPK-----LIEF-LATCPATTIAMEACGGSHFM-ARKLEELGHF----PKLISPQFVRPFVKSNKND 90 
                     7**************************9877.....5555.566899***********964.5556776666....555555666666899**** PP

  DEDD_Tnp_IS110  96 akDAkvIAdllrdrgrlrplklddeayaeLrqltrqredlvkertrlknrlralLdqv 153
                      +DA+ I++++  r ++r++++++e  +++r l r re+lv++ ++++n+++a+L ++
      EHT97576.1  91 FVDAEAICEAAS-RPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEF 147
                     ************.*****************************************9875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.27
  DEDD_Tnp_IS110 125 LrqltrqredlvkertrlknrlralLd 151
                     L +l ++++ lv+++ +l  +l+  Ld
      EHT97576.1 178 LLKLQQHYHYLVEQIKDLESQLKRKLD 204
                     456777888888888888888887777 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.33
  DEDD_Tnp_IS110  22 llservpndeeglealleklaakagevlvvveatghygallvaflle 68 
                     ++ ++++++  +l++++ +l+ ++++  v     ++ ++   ++l +
      EHT97576.1 282 VFIQKLEHQSGKLADWVRDLLCRKSNFVVTCALANKLARIA-WALTA 327
                     66778899999999999998888888888888777776543.33333 PP

>> MCRS_N  N-terminal region of micro-spherule protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.1e-05      0.14      56     134 ..     116     198 ..     111     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
      MCRS_N  56 vaalrnLhpevvasvqkkalfskeeeellatikst...eqptlekfqeLldknaavfypsrtaksLeahwqllk.qyqLLpdq 134
                 ++a+r+Lh      vq+k+  +++ +  l ++  +       ++++ +Ll++n+  +y s+   +L++h+ +l  q + L++q
  EHT97576.1 116 QQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISvprGAAVISRLSTLLEDNSLPLYLSQLLLKLQQHYHYLVeQIKDLESQ 198
                 799*****999999*****************998877778899***************************9885144555555 PP

>> DUF4635  Domain of unknown function (DUF4635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.1     0.014        62      95     127 ..     174     206 ..     163     211 .. 0.87
   2 ?    5.7   0.0    0.0022       9.7      80     116 ..     265     301 ..     254     305 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.014
     DUF4635  95 lhvflekleeevreleqlvrdleeWldallgdl 127
                 l  +l kl++  + l ++++dle+ l   l++ 
  EHT97576.1 174 LSQLLLKLQQHYHYLVEQIKDLESQLKRKLDED 206
                 6778999*******************9999875 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0022
     DUF4635  80 seePikvlrkWlkenlhvflekleeevreleqlvrdl 116
                 s+   k +r+ l +   vf++kle++  +l   vrdl
  EHT97576.1 265 SKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRDL 301
                 56677999****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2550.95
//
Query:       EHT97577.1  [L=114]
Description: mobilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-13   50.5   1.6    2.9e-13   50.0   1.6    1.2  1  MobC      Bacterial mobilisation protein (MobC)


Domain annotation for each model (and alignments):
>> MobC  Bacterial mobilisation protein (MobC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   1.6   1.6e-17   2.9e-13       1      45 []      57     101 ..      57     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.6e-17
        MobC   1 lreLrgIGnNlNQIAraaNsgqgsqavlaelkeelaeinkeLdql 45 
                 lr+L+g+GnNlNQIAr++N+g+gs ++  ++++ l +i + L++l
  EHT97577.1  57 LRQLAGMGNNLNQIARQVNAGGGSGIDRVQVIASLMAIDAGLERL 101
                 7***************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 851.33
//
Query:       EHT97578.1  [L=37]
Description: hypothetical protein CKS_5478 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      117  (0.00652574); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 301.18
//
Query:       EHT97579.1  [L=375]
Description: hypothetical protein CKS_5479 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-70  231.1  62.6    4.1e-14   51.9   8.5    6.4  6  Pentapeptide    Pentapeptide repeats (8 copies)
    6.5e-35  119.1   2.7    2.2e-11   43.8   0.1    3.6  3  Pentapeptide_4  Pentapeptide repeats (9 copies)
    1.6e-26   92.2   0.0    6.2e-05   23.1   0.0    5.9  5  Pentapeptide_3  Pentapeptide repeats (9 copies)
     0.0018   18.2   3.3         24    4.9   0.1    5.7  4  DNA_ligase_OB   NAD-dependent DNA ligase OB-fold domain
  ------ inclusion threshold ------
       0.11   12.5   1.8         13    5.8   0.0    3.5  5  CfAFP           Choristoneura fumiferana antifreeze protein (
       0.16   11.8   2.6        2.2    8.0   0.3    2.3  2  KIAA1328        Uncharacterised protein KIAA1328
       0.23   11.5   3.3         14    5.6   0.4    3.1  3  PapC_N          PapC N-terminal domain


Domain annotation for each model (and alignments):
>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   3.6   3.2e-16   8.3e-13       2      40 .]     148     186 ..     147     186 .. 0.98
   2 !   51.9   8.5   1.6e-17   4.1e-14       1      40 []     182     221 ..     182     221 .. 0.98
   3 !   44.8   4.6   2.6e-15   6.8e-12       1      40 []     212     251 ..     212     251 .. 0.98
   4 !   48.9   8.2   1.4e-16   3.6e-13       1      40 []     252     291 ..     252     291 .. 0.99
   5 !   49.0   5.5   1.2e-16   3.2e-13       2      40 .]     288     326 ..     288     326 .. 0.98
   6 !   44.1   1.7   4.3e-15   1.1e-11       1      40 []     327     366 ..     327     366 .. 0.99

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.2e-16
                   B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   2 nLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   nL+g+nLs ++L+ga ls+AnL++A+ls+A+Ls+anLsg
    EHT97579.1 148 NLKGVNLSDTDLKGAYLSDANLSDADLSDANLSDANLSG 186
                   9*************************************8 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 1.6e-17
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   AnLsgAnL +anL+ a ls+A+L++AnlsgAdL++anL++
    EHT97579.1 182 ANLSGANLAHANLTMAYLSEADLSNANLSGADLTNANLNQ 221
                   9*************************************97 PP

  == domain 3  score: 44.8 bits;  conditional E-value: 2.6e-15
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   A+L++AnL +++L ++nlsgAnL +Anl+ A Ls+a+Ls+
    EHT97579.1 212 ADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSN 251
                   8*************************************97 PP

  == domain 4  score: 48.9 bits;  conditional E-value: 1.4e-16
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   AnLs+A+L  a+Ls+anlsgA+Lt+Anl+++dL ++nLsg
    EHT97579.1 252 ANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSG 291
                   9**************************************8 PP

  == domain 5  score: 49.0 bits;  conditional E-value: 1.2e-16
                   B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   2 nLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   nLsgAnL +anL+ a ls+A+L++Anls+AdL++a+Ls+
    EHT97579.1 288 NLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSD 326
                   9************************************97 PP

  == domain 6  score: 44.1 bits;  conditional E-value: 4.3e-15
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   AnLs+AnL++ +L++a+ls+A L gAnl + + +g+n++g
    EHT97579.1 327 ANLSDANLTNVDLKRADLSNAILKGANLLHINVEGTNMTG 366
                   9*************************************98 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   9.4e-13   2.4e-09       8      76 ..     149     218 ..     147     219 .. 0.90
   2 !   43.8   0.1   8.5e-15   2.2e-11       1      70 [.     212     281 ..     212     285 .. 0.96
   3 !   41.5   0.1   4.4e-14   1.1e-10       8      76 ..     284     353 ..     279     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 9.4e-13
  Pentapeptide_4   8 fnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdid 76 
                     +++++ls+++++ a+l d+n+++++ls++n++++nls +++a+++l+ a +s+ +l+n+n+s+  l++++
      EHT97579.1 149 LKGVNLSDTDLKGAYLSDANLSDADLSDANLSDANLSGANLAHANLTMAYLSEADLSNANLSGaDLTNAN 218
                     6899999999999999999999999999999999999999999999999999999999999987899876 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 8.5e-15
  Pentapeptide_4   1 aeftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70 
                     a++t++ +n+++l nvn+s a+l  +n+t + ls++ ++++nls++d+  +dl +a++sg +l+n+n++ 
      EHT97579.1 212 ADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQ 281
                     689*****************************************************************75 PP

  == domain 3  score: 41.5 bits;  conditional E-value: 4.4e-14
  Pentapeptide_4   8 fnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdid 76 
                     + n++ls++n+++a+l  + ++e++lsn+n+++++l+ +d+++++l +a++++++lk + +s+  lk+++
      EHT97579.1 284 LPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNaILKGAN 353
                     6788999999999999999999999999999999999999999999999999999999999665788775 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.7e-07   0.00044       6      47 ..     149     187 ..     147     193 .. 0.76
   2 !   17.3   0.0   1.5e-06    0.0039       7      47 ..     200     237 ..     189     240 .. 0.60
   3 !   22.3   0.0   4.3e-08   0.00011       4      47 ..     237     277 ..     226     304 .. 0.72
   4 !   23.1   0.0   2.4e-08   6.2e-05       6      47 ..     304     342 ..     285     343 .. 0.79
   5 ?    2.4   0.0      0.07   1.8e+02      30      44 ..     341     354 ..     336     368 .. 0.49

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.7e-07
  Pentapeptide_3   6 FsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     ++g  +++++  +ga + s+a++++ad+s+a+ + d+++sga
      EHT97579.1 149 LKGV-NLSDTDLKGA-YLSDANLSDADLSDANLS-DANLSGA 187
                     5666.8888888888.788888888888888888.8888877 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.5e-06
  Pentapeptide_3   7 sgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     s a d+++a+ sga + +na+++  d+ +++ + ++++ +a
      EHT97579.1 200 SEA-DLSNANLSGA-DLTNANLNQTDLPNVNLS-GANLAHA 237
                     344.5555555555.555555555555555555.5555554 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 4.3e-08
  Pentapeptide_3   4 anFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     an++ a ++++a  s+a + snad+ +ad+s+a+ + ++d+++a
      EHT97579.1 237 ANLTMA-YLSEADLSNA-NLSNADLKRADLSNANLS-GADLTNA 277
                     556666.6666666666.666666666666666666.6666665 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 2.4e-08
  Pentapeptide_3   6 FsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     +s a d+++a+ s+a + ++ad+++a++s+a+ t +vd+++a
      EHT97579.1 304 LSEA-DLSNANLSNA-DLKRADLSDANLSDANLT-NVDLKRA 342
                     4555.8888888888.888888888888888888.8888876 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.07
  Pentapeptide_3  30 sadFsgarFtgdvdF 44 
                     +ad+s+a+ + ++++
      EHT97579.1 341 RADLSNAILK-GANL 354
                     4444444444.3333 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.058   1.5e+02      20      20 ..     191     191 ..     144     226 .. 0.59
   2 ?    4.3   0.0     0.014        36      14      43 ..     230     259 ..     225     268 .. 0.79
   3 ?    0.2   0.0      0.27   6.8e+02      21      42 ..     262     283 ..     259     288 .. 0.83
   4 !    4.9   0.1    0.0092        24      15      43 ..     291     319 ..     284     356 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.058
                    X CS
  DNA_ligase_OB  20 v 20 
                     
     EHT97579.1 191 H 191
                    1 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.014
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB  14 tGaltpvAeLepvelaGttVsratLhnede 43 
                    +Ga    A+L+   l+    s+a+L n+d 
     EHT97579.1 230 SGANLAHANLTMAYLSEADLSNANLSNADL 259
                    566677899999999999999999999984 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.27
                    XXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB  21 AeLepvelaGttVsratLhned 42 
                    A+L+  +l+G   ++a+L+  d
     EHT97579.1 262 ADLSNANLSGADLTNANLNQTD 283
                    7889999999999999998665 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0092
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB  15 GaltpvAeLepvelaGttVsratLhnede 43 
                    Ga    A+L+   l+    s+a+L n+d 
     EHT97579.1 291 GANLAHANLTMAYLSEADLSNANLSNADL 319
                    55556677777777777777777777763 PP

>> CfAFP  Choristoneura fumiferana antifreeze protein (CfAFP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.6   9.3e+03      93     105 ..      12      24 ..       9      27 .. 0.77
   2 ?    0.8   0.0      0.17   4.5e+02      55     104 ..     160     209 ..     121     222 .. 0.56
   3 ?    0.5   0.0      0.21   5.3e+02      36      74 ..     191     229 ..     165     247 .. 0.56
   4 ?    2.5   0.0     0.053   1.4e+02      42      79 ..     247     284 ..     224     305 .. 0.63
   5 ?    5.8   0.0    0.0051        13      42     102 ..     307     367 ..     285     371 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.6
       CfAFP  93 yitsstttgtris 105
                  i ss  tgt+i 
  EHT97579.1  12 NILSSQMTGTSIK 24 
                 5778888888875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
       CfAFP  55 trsqysdayvkksvttdcnidksqlygttctgsrydGvyitsstttgtri 104
                   +  sda++ ++  +d+n+++++l g+  + ++    y+  +  +++++
  EHT97579.1 160 KGAYLSDANLSDADLSDANLSDANLSGANLAHANLTMAYLSEADLSNANL 209
                 33444566666666666666666665555555544444444444444444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.21
       CfAFP  36 kstltncyidnselessictrsqysdayvkksvttdcni 74 
                 ++ lt  y+ +++l ++  + ++ ++a+++++   ++n+
  EHT97579.1 191 HANLTMAYLSEADLSNANLSGADLTNANLNQTDLPNVNL 229
                 344445555555554444444444444444444444444 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.053
       CfAFP  42 cyidnselessictrsqysdayvkksvttdcnidksql 79 
                   + n++l ++   r++ s+a++  +  t++n+++++l
  EHT97579.1 247 ADLSNANLSNADLKRADLSNANLSGADLTNANLNQTDL 284
                 33344445455556777777777777777777766655 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0051
       CfAFP  42 cyidnselessictrsqysdayvkksvttdcnidksqlygttctgsrydGvyitsstttgt 102
                   + n++l ++   r++ sda++ ++  t++++++++l  +   g++   + +  +  tgt
  EHT97579.1 307 ADLSNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANLLHINVEGTNMTGT 367
                 3445666666677899999999999999999999999998888888888888877777777 PP

>> KIAA1328  Uncharacterised protein KIAA1328
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3   0.00087       2.2      75     162 ..     197     286 ..     191     291 .. 0.83
   2 ?    3.6   0.1     0.019        49     108     162 ..     292     346 ..     286     359 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00087
    KIAA1328  75 kYLseqq.ekltlsLseLsaakekeqqvsn.kksslqsssleldgsylsvakeqtlyqtkkrsksasqdsasesllerrnnslktatlhn 162
                  YLse      +ls ++L++a+ ++  + n + s ++ ++ +l+ +yls a   + + ++   k+a  ++a +s  +  n +l++++l n
  EHT97579.1 197 AYLSEADlSNANLSGADLTNANLNQTDLPNvNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQTDLPN 286
                 6888865356788889999999885555542457788899******************************************99998765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.019
    KIAA1328 108 lqsssleldgsylsvakeqtlyqtkkrsksasqdsasesllerrnnslktatlhn 162
                 ++ ++ +l+ +yls a   + + ++   k+a  + a +s  +  n  lk a+l+n
  EHT97579.1 292 ANLAHANLTMAYLSEADLSNANLSNADLKRADLSDANLSDANLTNVDLKRADLSN 346
                 5667899*****************************************9999876 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.084   2.2e+02      15      83 ..     147     220 ..     133     248 .. 0.56
   2 ?    5.6   0.4    0.0056        14       7      81 ..     249     323 ..     243     333 .. 0.85
   3 ?    3.4   0.0     0.028        73       7      42 ..     329     364 ..     323     368 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.084
                 HHHHHHHTT-SS-SEEEEEEEEETTEEEEEEEEEEEECC.....TCCCEEEE-BHHHHHHTTB-GGGSCCGHHT CS
      PapC_N  15 vdlsrFskgnavlpGeYrvdvyvNgkeigrqevefkaek.....kkkklepcltrelleqlgvkleklpelaka 83 
                 ++l+  + +++ l G Y  d  + +  ++  +++  + +     + + + ++l++++l+++++  ++l++++ +
  EHT97579.1 147 INLKGVNLSDTDLKGAYLSDANLSDADLSDANLSDANLSganlaHANLTMAYLSEADLSNANLSGADLTNANLN 220
                 55555555566667777777777777777776664444422232333334444444444444444444333333 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0056
                 CTTXTTHHHHHHHHHTT-SS-SEEEEEEEEETTEEEEEEEEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGH CS
      PapC_N   7 LegssasnvdlsrFskgnavlpGeYrvdvyvNgkeigrqevefkaekkkkklepcltrelleqlgvkleklpela 81 
                 L++ + sn+dl+r + +na l G    +  +N++ + + +++  + ++ + + ++l++++l+++++  ++l++++
  EHT97579.1 249 LSNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRAD 323
                 66778899**********************************888889999999999999999999977666654 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.028
                 CTTXTTHHHHHHHHHTT-SS-SEEEEEEEEETTEEE CS
      PapC_N   7 LegssasnvdlsrFskgnavlpGeYrvdvyvNgkei 42 
                 L++ + +nvdl+r + +na+l G + + + v g+++
  EHT97579.1 329 LSDANLTNVDLKRADLSNAILKGANLLHINVEGTNM 364
                 6677899***********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2831.71
//
Query:       EHT97580.1  [L=499]
Description: MbeA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-19   67.9   0.0    2.1e-18   66.8   0.0    1.6  1  Relaxase  Relaxase/Mobilisation nuclease domain


Domain annotation for each model (and alignments):
>> Relaxase  Relaxase/Mobilisation nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.2e-22   2.1e-18      61     234 ..      57     238 ..      41     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.2e-22
    Relaxase  61 iqSFspgeltp....eqineigrelakklgpgnhqyavatHvDkdhlHnHiviNrvnletgkkfrenk.eayrklrkvndelasreglsideksprnrq 154
                  +SFs+++l p    + ++ ++r l+ +l   ++ +++++H Dk++l+++++i++++l tgk++++++ +a+r   ++ +++ + +   +d ++p+nr+
  EHT97580.1  57 VLSFSEQDLPPgqreKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGKRLQPYYdRADRPRINAWQTIVNGRLGLHDPNAPENRR 155
                 689*****98899988999******************************************************999******999999999999****9 PP

    Relaxase 155 seaekekae.knkssykeeirqalkkale.nasdfedlkealkekglelrrktgkkltykltdenq.kkvrgsklgkdyqkek 234
                   ++   ++  ++   ++++r+ l  a++ + +  +d+ eal++ g+e+ r t++++++++ d  +  +++g+ ++++++ ++
  EHT97580.1 156 ALVTPSALPeAKQEAAQSITRGLLSLASSgELKTRQDVTEALESAGFEVVRTTKNSISIAGPDGGRnIRLKGAIYEQSFNAGE 238
                 99998888867899999***********9********************************9988889999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3896.38
//
Query:       EHT97581.1  [L=114]
Description: mobilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-13   50.5   1.6    2.9e-13   50.0   1.6    1.2  1  MobC      Bacterial mobilisation protein (MobC)


Domain annotation for each model (and alignments):
>> MobC  Bacterial mobilisation protein (MobC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   1.6   1.6e-17   2.9e-13       1      45 []      57     101 ..      57     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.6e-17
        MobC   1 lreLrgIGnNlNQIAraaNsgqgsqavlaelkeelaeinkeLdql 45 
                 lr+L+g+GnNlNQIAr++N+g+gs ++  ++++ l +i + L++l
  EHT97581.1  57 LRQLAGMGNNLNQIARQVNAGGGSGIDRVQVIASLMAIDAGLERL 101
                 7***************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 911.04
//
Query:       EHT97582.1  [L=229]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-15   56.5   0.0    1.6e-14   53.9   0.0    2.2  2  HTH_Tnp_1     Transposase
    1.4e-06   27.9   0.0      0.017   14.9   0.0    2.3  2  HTH_23        Homeodomain-like domain
     0.0034   17.5   0.0       0.66   10.2   0.0    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.054   13.4   0.1       0.68    9.9   0.0    2.3  2  MarR_2        MarR family
      0.084   13.4   0.2        3.4    8.3   0.0    2.6  3  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.9e+03      14      38 ..       9      33 ..       8      37 .. 0.83
   2 !   53.9   0.0   4.6e-18   1.6e-14       3      57 ..      91     145 ..      89     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspn 38
                +++++ +++    +e  rr+g+ + 
  EHT97582.1  9 EALHLHFDENLARVEAGRRLGIPKT 33
                67788889999999999****9875 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 4.6e-18
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspae 57 
                 rr  ++++fK+++V+ sl+pg++v+++Ar+ g+++n L++Wr++yr+g++ +  +
  EHT97582.1  91 RRPNFPRAFKIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRKGLLLPHNS 145
                 6789******************************************999876665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.8e-06     0.017       9      46 ..       9      47 ..       7      48 .. 0.88
   2 !   10.7   0.0   9.7e-05      0.35      11      46 ..     104     139 ..      97     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ +  l + e+ r+Lg+++ Tv+    r+r+ Gl
  EHT97582.1  9 EALHLHFDeNLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                67777776699999*********************9998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                 +   ++ G +v++ Are g++ + + +w++ y ++Gl
  EHT97582.1 104 VEKSLQpGTNVAQLARENGINDNLLFNWRSLY-RKGL 139
                 4445568999**********************.5775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0076        27      11      41 ..      16      47 ..       5      53 .. 0.81
   2 !   10.2   0.0   0.00018      0.66       2      40 ..     100     138 ..      99     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0076
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGi 41
                + + ++ ea r+lgi  +tv ++  r+++ G+
  EHT97582.1 16 DENlARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                45557889************999999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00018
      HTH_28   2 Rleiikllaa.GhsvreaArelgisrrtvyrWikryeegG 40 
                 ++  ++  ++ G +v+++Are gi+   +  W++ y++ G
  EHT97582.1 100 KIALVEKSLQpGTNVAQLARENGINDNLLFNWRSLYRK-G 138
                 5555655565588************************9.5 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019      0.68      10      50 ..       7      47 ..       4      47 .. 0.91
   2 ?    0.7   0.0      0.14     5e+02      18      33 ..     110     123 ..     102     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l+  e  rrlg++k +v  +  r+ +aGL
  EHT97582.1  7 LLEALHLHFDENLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                6888888888889999***********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 TTSEEEHHHHHHHHTS CS
      MarR_2  18 pgrdltvgelarrlgl 33 
                 pg   +v++lar+ g+
  EHT97582.1 110 PG--TNVAQLARENGI 123
                 66..799******998 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058   2.1e+02      25      55 ..      18      48 ..      10      51 .. 0.86
   2 ?    8.3   0.0   0.00094       3.4      14      71 ..     100     154 ..      85     166 .. 0.78
   3 ?   -2.9   0.0       2.9     1e+04      59      71 ..     207     219 ..     196     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.058
  LZ_Tnp_IS481 25 rrtvaqvarelGvslrtaykwlarfraeGld 55
                  + +  ++ r lG+ + t      rfr  Gl 
    EHT97582.1 18 NLARVEAGRRLGIPKTTVCDLFVRFRKAGLS 48
                  5555678999*****************9995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00094
  LZ_Tnp_IS481  14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldrssrPrrvPkat 71 
                   ++ lv++ ++    vaq are G+  +  + w + +r  Gl  ll   s P   P   
    EHT97582.1 100 KIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRK-GL--LLPHNSEPALLPVML 154
                   56799***************************999984.44..455666666666555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
  LZ_Tnp_IS481  59 drssrPrrvPkat 71 
                    r sr   +P+a 
    EHT97582.1 207 KRGSRCSPSPQAH 219
                   5777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1840.25
//
Query:       EHT97583.1  [L=39]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   24.0   0.0    2.9e-05   23.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.9e-05      71     100 ..       2      30 ..       1      31 [. 0.92

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-09
   TnpB_IS66  71 wpkeeeeeaveltaeqlelLleGldlervk 100
                 wp  +++++v+lt++ql++LleG+++++++
  EHT97583.1   2 WPL-TRDGKVHLTPAQLSMLLEGINWKHPQ 30 
                 996.9999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 302.02
//
Query:       EHT97584.1  [L=69]
Description: hypothetical protein CKS_5553 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      120  (0.00669307); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 507.32
//
Query:       EHT97585.1  [L=1448]
Description: DNA replication primase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-48  161.8   0.0    2.8e-47  159.9   0.0    2.1  1  MPTase-PolyVal  Metallopeptidase superfamily domain
      2e-32  112.0   2.0    2.5e-32  111.7   0.0    2.3  2  DUF1738         Domain of unknown function (DUF1738)
      2e-07   31.3   8.2    7.2e-07   29.5   0.1    4.3  3  Toprim_3        Toprim domain
  ------ inclusion threshold ------
      0.061   13.0   0.1      0.061   13.0   0.1    2.4  2  EpmC            Elongation factor P hydroxylase


Domain annotation for each model (and alignments):
>> MPTase-PolyVal  Metallopeptidase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0   6.3e-51   2.8e-47       1     125 [.     374     499 ..     374     500 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 6.3e-51
  MPTase-PolyVal   1 eeaeallaatgaeirhg.gdrAfYspskDeiqlPekeaFeeaesyyatllHelvHwtghesRldrdlskrfgseayarEElvAelgaaflcaelg 94 
                     e+ae++l+a+ga+i+h  gdrAfY+ps+D+i+lPe+ +F ++++yyat+lHel+Hwtgh+sRldrdl++ fgse ya+EEl+Ae++++++  elg
      EHT97585.1 374 ERAEHILKASGATITHAaGDRAFYRPSTDSITLPERGQFPSSDRYYATALHELGHWTGHASRLDRDLAHPFGSEGYAKEELRAEIASMIVGDELG 468
                     689*************99***************************************************************************** PP

  MPTase-PolyVal  95 iepevrdhaaYiasWlkvLkedkraifrAas 125
                     i +++ +haaY++sW+k+L++++ ++frAa+
      EHT97585.1 469 IGHDPGQHAAYVGSWIKALQDEPLEVFRAAA 499
                     ******************************8 PP

>> DUF1738  Domain of unknown function (DUF1738)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   5.5e-36   2.5e-32       3     123 ..     226     346 ..     224     351 .. 0.89
   2 ?   -2.9   0.6       1.5   6.7e+03      92     112 ..    1416    1436 ..    1404    1445 .. 0.57

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 5.5e-36
     DUF1738   3 yeeitekiieklekgtapWqkpWkt.sgslglpkNavsgkeYrGiNvllLwlaaeekgyespvwlTfkqakelgaqvrkGekgtpvvyykfiekketke 100
                 +e ++ek+ie+l++gtapWqkpW+  + +  lp+N ++gk+Y+GiN++ L+++    g ++ +w+T+kqa + gaqvrkGekgtpv y+kf e++++ +
  EHT97585.1 226 HEVVAEKLIEQLKAGTAPWQKPWEPgEPNAYLPMNPTTGKRYKGINAIHLMAQ----GRSDARWMTYKQAAAVGAQVRKGEKGTPVQYWKFSEEQDKLD 320
                 6789*********************999***********************99....***********************************9999999 PP

     DUF1738 101 kekeevdsekeeeeeeke...ipflk 123
                 ++ ++v + k +  +e+    +p + 
  EHT97585.1 321 DSGRPVLDAKGQPVKETVmleRPRVF 346
                 99999999977766666544444443 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
     DUF1738   92 fiekketkekekeevdsekee 112 
                  +++++e++++e+++v++++++
  EHT97585.1 1416 QVQRDEQQHQEQKHVEKKQQQ 1436
                  455555555555555554332 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.087   3.9e+02      47      71 ..    1118    1142 ..    1103    1158 .. 0.86
   2 !   29.5   0.1   1.6e-10   7.2e-07       2      69 ..    1239    1316 ..    1238    1334 .. 0.88
   3 ?    1.7   0.2     0.076   3.4e+02      55      90 ..    1360    1397 ..    1348    1400 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.087
    Toprim_3   47 aaDnDaandGreaaeklaerleaag 71  
                  + D+++a+ + eaaekla+r+ +++
  EHT97585.1 1118 LSDQEKAKLQAEAAEKLAQRAVEQD 1142
                  6799***99*********9986655 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 1.6e-10
    Toprim_3    2 liivEGietaLsileartgaaviAllsaanlkaiawp....ergkrvviaaDnDaand.......Greaaeklaerlea 69  
                  l+i EG++ta+ +  + +g+a++A+++ +nl+a+a +    ++ k v+ia D+D +         Gre ae++a+++ +
  EHT97585.1 1239 LVISEGYATAAQV-AEAVGHATVAAFDSGNLEAVAKAlhakFPDKPVIIAGDDDRHLVmthgnnpGREKAEAAAQAVGG 1316
                  78***********.899****************999999956*************95599************9999875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.076
    Toprim_3   55 d...GreaaeklaerleaagieavllepaegeDwndvlq 90  
                      G eaa+  a+ l +a i+a   + ++++D+nd++ 
  EHT97585.1 1360 VelaGDEAAKLKASMLSGAQIAALSTM-KQHTDFNDLAH 1397
                  144577777766777776666555544.5667****976 PP

>> EpmC  Elongation factor P hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.4e-05     0.061      11      70 ..     385     445 ..     377     457 .. 0.69
   2 ?   -6.7   3.4         4   1.8e+04      74      93 ..    1419    1438 ..    1418    1444 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
        EpmC  11 ntrLvkgddePiYlPadeeeel.hriif..ahgyfasalheiahWciaGeerrkleDygYWYe 70 
                  t+  +++d   Y P++++ +l +r  f  +  y+a alhe+ hW+  G++ r  +D ++ + 
  EHT97585.1 385 ATITHAAGDRAFYRPSTDSITLpERGQFpsSDRYYATALHELGHWT--GHASRLDRDLAHPFG 445
                 566667788888999877654314445522678************6..777777777766555 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 4
        EpmC   74 rdaeqqaefekvevkPqale 93  
                  rd++q +e ++ve k q +e
  EHT97585.1 1419 RDEQQHQEQKHVEKKQQQIE 1438
                  88999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.95u 0.28s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 9379.48
//
Query:       EHT97586.1  [L=129]
Description: hypothetical protein CKS_5555 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1014.44
//
Query:       EHT97587.1  [L=687]
Description: DNA topoisomerase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-111  371.6   0.0   6.1e-111  371.4   0.0    1.1  1  Topoisom_bac     DNA topoisomerase
    7.9e-18   64.6   0.0    1.9e-17   63.4   0.0    1.7  1  Toprim           Toprim domain
    4.2e-07   29.6   2.9    8.3e-07   28.7   2.9    1.5  1  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
  ------ inclusion threshold ------
      0.058   13.9   0.8       0.12   12.9   0.8    1.5  1  Zn_ribbon_recom  Recombinase zinc beta ribbon domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.4   0.0  1.4e-114  6.1e-111       4     412 ..     158     600 ..     155     601 .. 0.94

  Alignments for each domain:
  == domain 1  score: 371.4 bits;  conditional E-value: 1.4e-114
  Topoisom_bac   4 enlvdaaeaRrelDwliGinlsrlltk.klkg...kkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke........kkkkkkk 88 
                      +daa  R+++DwliG+nlsr++t+ + ++     +l++GRVqtptLal+v R+reie+F+  +y +++a +++++++++        +   +++
    EHT97587.1 158 AGWADAARGRQRADWLIGMNLSRAYTLrA-QRggsRALLTVGRVQTPTLALVVARDREIEAFKAVPYHTIRAVVQHAGGSFAaawkakedQAGLDSE 253
                   56799**********************63.433678999*********************************997777777789***99888999** PP

  Topoisom_bac  89 erikdkeeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlsee..aelkailea 183
                   +r+ d   a+a+++++k +  ++ +++++ kk+++pl f ++++   as k+g+sa+ +l+++q+LYe+++l +YpRTd+ +l+e+  a+++ +lea
    EHT97587.1 254 GRLVDTAVADALVAAVKGQPGTIAAYKQEAKKQNQPLAFALSDITALASAKFGYSAEDVLNTCQALYETHKLTSYPRTDCAYLPESqhADAPRVLEA 350
                   ****************8889*****************************************************************999899****** PP

  Topoisom_bac 184 lakkygkeylefaekllkktkkksvvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktile 280
                   +++ +++e+++ +  ++ + k+k +++++k +aH+ I Pt++  ++ +ls+ e+++Y+lIvr +la++++ ++y +ttv +e+++e+f asgk+++ 
    EHT97587.1 351 IKH-VNPELAGLVDGADPRIKSK-TWDDSKITAHHGIVPTMQKGSKAALSERERNIYDLIVRAYLAQFYPLHEYMQTTVGVEIAGENFAASGKVVTR 445
                   **9.6889***9***99988866.9***************9998889************************************************** PP

  Topoisom_bac 281 kGfkkvy....keekkeeeee........elpelkegeevkvkeveleekkTkppkryteasLikameka.................giGtpaTrae 348
                   +G++ vy    +    e e++         lp++++g+ v++++++ ++ kTkpp+r+te++Li+ame+                  giGt aTra+
    EHT97587.1 446 NGWRDVYsqadE----EGEKDedddsgtqALPSMAQGDAVTCTDATRKDAKTKPPARFTEGTLIRAMENIhkfvsdaehkkmlregdGIGTSATRAS 538
                   *******65431....3322234678999******************************************************************** PP

  Topoisom_bac 349 iieklvergYverkkkslvptelGkalvellekfkdlvspelTaeleekLdeIaegkadakevl 412
                   ii++l++r+++ +k+k+++ t+lG++++++l+  + ++sp lTa  e++L+ +++g+a  ++++
    EHT97587.1 539 IISELKRREFLAVKGKQIISTTLGRSVIDALP--EVVKSPVLTALYERMLKGVEQGTAALDAFI 600
                   *************99****************9..67*********************9988876 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   4.1e-21   1.9e-17       2     101 ..       3     137 ..       2     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 4.1e-21
                 EEEESSHHHHHHHHHTHT..........STEEEEEEESSSSEEEHS.........................TTEEEEE..ECTTTHHHHHHHHHHHHHH CS
      Toprim   2 lvivEgpsdaktiakalg..........sgfqavtaslGhildlet.........................efkpvye..eiedkkkvlkalkelakra 63 
                 l+i+E+ps ak+ia  lg          +g+ +vt++ Gh+l++++                         ++++ ++   ++d+kk+l+++ +l+k+a
  EHT97587.1   3 LFIAEKPSVAKAIAGELGatgkgdgfieCGTDKVTWCFGHMLEQADpdeytpddvprgqsgkkvwrvdelpIIPESWIlkPKDDAKKQLAVIGKLLKEA 101
                 9*********************************************999999999999877777777655544444449999***************** PP

                 SEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEES CS
      Toprim  64 deiilatDpDreGeaiawellevlkellenkigrvefs 101
                 +ei+ a DpDreG+ +  e+le+++  +++ ++r ++s
  EHT97587.1 102 KEIVNAGDPDREGQLLVDEVLEHFR--NSKPVRRFWVS 137
                 *************************..77788999987 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   2.9   1.8e-10   8.3e-07       3      37 ..     635     671 ..     634     673 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.8e-10
                     E-SSS--EEEEEE-SSS..EEEEESST.T----EEB- CS
  zf-C4_Topoisom   3 kCPkCggdLvlkrgkkG..kFvGCsnYPeCkftkklk 37 
                     kC +Cg+ L ++ +kk+     GCsn+P Ck t+++ 
      EHT97587.1 635 KCMACGSGLSRRPSKKKgqFWWGCSNFPTCKQTYPDL 671
                     89**********9998888889***********9986 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   2.7e-05      0.12       4      32 ..     632     661 ..     629     671 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
  Zn_ribbon_recom   4 GllrCgeCGspmtrrkrk.gkrhyYrCsty 32 
                       l +C  CGs ++rr +k +++  + Cs+ 
       EHT97587.1 632 SLHKCMACGSGLSRRPSKkKGQFWWGCSNF 661
                      6779***********988677799****84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5289.19
//
Query:       EHT97588.1  [L=178]
Description: TraF family plasmid transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-44  148.8   0.0      1e-43  148.4   0.0    1.1  1  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   5.8e-48     1e-43       2     138 .]      32     177 ..      31     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 5.8e-48
  Peptidase_S26   2 ilNasaSvpvglYriealeklevgdlvlvepPeelaalaa.ergylprgv......pllKrVlalagqevcvadgavtidg..vavsealerDrkg 88 
                    ++N+++S+pvglY++++++  e+g++vl++pP+  +++ a ergy+++g+      +++KrVla++++ v vad++v+++g  +++s+++++D+ g
     EHT97588.1  32 RVNTTKSIPVGLYWTSSAPV-EKGAYVLFCPPQLGVFDDAkERGYIGAGFcqggygYMMKRVLAAKDDAVAVADDGVRVNGelLPLSAPIKADKAG 126
                    79****************99.*************9999999******************************************************* PP

  Peptidase_S26  89 rplpslq.gcrvlaegelfllskevadSfDsRYfGpvpassvigvarpvlt 138
                    rplp+ q ++++l+++e++l+s+ +a+SfD+RYfGp+++s++ +v+rpv+t
     EHT97588.1 127 RPLPRYQsNSYTLGNSEVLLMSDVSATSFDGRYFGPINRSQIKTVIRPVIT 177
                    ******98899**************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1450.34
//
Query:       EHT97589.1  [L=460]
Description: TraG family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-150  501.9   0.0     2e-150  501.7   0.0    1.0  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
    1.5e-32  112.2   0.0    2.3e-32  111.6   0.0    1.3  1  TraG-D_C         TraM recognition site of TraD and TraG
    7.2e-23   81.1   0.0    2.3e-22   79.4   0.0    1.6  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN


Domain annotation for each model (and alignments):
>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.7   0.0  3.4e-154    2e-150      48     464 ..       2     443 ..       1     447 [. 0.98

  Alignments for each domain:
  == domain 1  score: 501.7 bits;  conditional E-value: 3.4e-154
  T4SS-DNA_transf  48 lvvAptrsgKgvgvviPnllkwkqsiVvlDpkgElaeltskiRkkqgr.kVfvlePanlktsdrfNpldyidlksevetedilsvaslilkkkg 140
                      l++AptrsgKgvg+v+P+ll+w+ s V++D+kgEl++lt+++R+k+++ kV ++ePa++ ++ ++Npld+i+l++e+e+ d++++a+li++++g
       EHT97589.1   2 LTYAPTRSGKGVGLVVPTLLSWGASSVITDLKGELWALTAGWRQKHAKnKVLRFEPASTSGGVCWNPLDEIRLGTEYEVGDVQNLATLIVDPDG 95 
                      789******************************************************************************************* PP

  T4SS-DNA_transf 141 kgkddffsntarqLlvaliaevllkketetegqtlkvvramlsepnled.enkeeaklleelkgkeedrvgdnlrvlvektdetrsSvlgtaks 233
                      kg d+++++ta +Llv++i+++l+k++ +  ++tl++v+aml++pn++  e ++e++++ +++g+++ ++g+++r+++++++e+ +Svl+taks
       EHT97589.1  96 KGLDSHWQKTAFALLVGVILHALYKAKDDGGTATLPSVDAMLADPNRDIgELWMEMATYGHVDGQNHHAIGSAARDMMDRPEEEAGSVLSTAKS 189
                      *********************************************9999********************************************* PP

  T4SS-DNA_transf 234 elalyadplvrnatSksdFdlrdlr..rkkvsvyvivnpkdlevvapllrlffnmvvellkrklpnkderpke.....vlflLDEfpslGklei 320
                      +laly+dp+v++++S+sdF++++l+  +++vs+y++++p+d+++++pl+r+++nm+v+ll++k++++ +rp++     +l++LDEfpslGklei
       EHT97589.1 190 YLALYRDPVVARNVSRSDFRIKQLMheDDPVSLYIVTQPNDKARLRPLVRVMVNMIVRLLADKMDFEGGRPVAhykhrLLMMLDEFPSLGKLEI 283
                      *************************9999******************************************999999***************** PP

  T4SS-DNA_transf 321 leealatiagYgirltlIiQsisqlketYgkegaksilsnsavvivfaasndeetaeyiSkllGktTvekestsk...stdakgksrsrsisek 411
                      ++e+la++agYgi+++lI+Q+i+qlk++++++g++++++++++v++++++n+ etae++S+l+G+tTv ke++++   +t a + + sr+++e+
       EHT97589.1 284 MQESLAFVAGYGIKCYLICQDINQLKSRETGYGHDESITSNCHVQNAYPPNRVETAEHLSRLTGQTTVVKEQITTsgrRTAAMLGQVSRTYQEV 377
                      **************************************************************************9997899************* PP

  T4SS-DNA_transf 412 qRaLltPdevlrmdddee............ivlikgqkPikakkalYykdedfkaelakps.alsk 464
                      qR+LltPde+lrm+ +++            +++++g+++i+ k++lY+kd+ f a++a p+ ++s 
       EHT97589.1 378 QRPLLTPDECLRMPGPKKnaqgeieeagdmVIYVAGYPAIYGKQPLYFKDPVFSARAAIPApKVSD 443
                      ******************************99***********************99988766665 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   3.9e-36   2.3e-32       1     125 [.     267     391 ..     267     392 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 3.9e-36
    TraG-D_C   1 pvlfllDEfanlgkipdleellstgrsrgislvlilQsiaqlee...lYgkegaetilgncdvklflgvndeetaeelSkllGektvesestsssssgs 96 
                 ++l++lDEf++lgk++ ++e l++++++gi+++li+Q+i+ql++    Yg  ++e+i +nc+v+ ++ +n++etae+lS+l+G++tv++e+ ++s++++
  EHT97589.1 267 RLLMMLDEFPSLGKLEIMQESLAFVAGYGIKCYLICQDINQLKSretGYG--HDESITSNCHVQNAYPPNRVETAEHLSRLTGQTTVVKEQITTSGRRT 363
                 799***************************************99666799..58*****************************************9998 PP

    TraG-D_C  97 g...gssessssssqseekrpLltpdeirrlp 125
                 +   g    + s++++e++rpLltpde+ r+p
  EHT97589.1 364 AamlG----QVSRTYQEVQRPLLTPDECLRMP 391
                 74433....457899999*************9 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   3.9e-26   2.3e-22      68     366 ..      55     391 ..      17     407 .. 0.75

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 3.9e-26
  TrwB_AAD_bind  68 lnPlD.aRsaaWsvfaeik.....eksdfaeiAaalipedggssdpfWaeaartvlaetlrelv....rekkksnaallralltadleeLkellag 153
                    ++P   +  + W++++ei+     e  d++++A  ++  dg++ d  W ++a  +l+ ++ + +    +++ + +   ++a+l ++ +++ el  +
     EHT97589.1  55 FEPAStSGGVCWNPLDEIRlgteyEVGDVQNLATLIVDPDGKGLDSHWQKTAFALLVGVILHALykakDDGGTATLPSVDAMLADPNRDIGELWME 150
                    56654134678******9844333456789****999999****************9987665411103334444667999*********999999 PP

  TrwB_AAD_bind 154 teaaalvaeeaertaasi.ratla.tnlevlelLaekge.................rFSireWleeedesgwlfltskaeqrallrpllsawldla 230
                     + ++ v+ +++ +  s  r ++  ++ e+ ++L + ++                  F i++ ++e+d +  l++  +++++a lrpl+ +++++ 
     EHT97589.1 151 MATYGHVDGQNHHAIGSAaRDMMDrPEEEAGSVLSTAKSylalyrdpvvarnvsrsDFRIKQLMHEDD-PVSLYIVTQPNDKARLRPLVRVMVNMI 245
                    888888884444433333033332122233333332222233333333333344458*********98.88899999******************* PP

  TrwB_AAD_bind 231 ikallslpe........srerrlWfflDElpaLgrleelksllaegRkfGgavvlglqsiaqlrev...YGedaaqsilslvntklilrvsdaetA 315
                    ++ l +  +        + + rl ++lDE+p+Lg+le +++ la +  +G+ + l  q+i+ql+     YG+d  +si s+++ +     +  etA
     EHT97589.1 246 VRLLADKMDfeggrpvaHYKHRLLMMLDEFPSLGKLEIMQESLAFVAGYGIKCYLICQDINQLKSRetgYGHD--ESITSNCHVQNAYPPNRVETA 339
                    ***999666678888988999******************************************8755459997..68******************* PP

  TrwB_AAD_bind 316 eelsellGeqeversteslsygan.nsrdgvslgrqrevrpvVlaselqnlp 366
                    e+ls+l G+  v +++ + s  ++ ++  +vs + q+ +rp+++++e +++p
     EHT97589.1 340 EHLSRLTGQTTVVKEQITTSGRRTaAMLGQVSRTYQEVQRPLLTPDECLRMP 391
                    ******************88333314557789999999**********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3190.30
//
Query:       EHT97590.1  [L=389]
Description: phage late control gene D protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-12   46.8   0.1    3.5e-12   46.2   0.1    1.2  1  Phage_GPD  Phage late control gene D protein (GPD)


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   1.9e-16   3.5e-12      78     303 ..     127     341 ..     120     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.9e-16
   Phage_GPD  78 rrdsriFqnktvpdIleavlaehgiavekrfrlers..ypkreycvQyrESdlaFvsRLleeeGifyffehedgshtLvladassalppsaggpsiryh 174
                 +  sr F  +t+ +I+  ++++h+       +l  s   +k++ ++Qy E+d  F++RL++e+G  + +      ++L+++   +    + g++ +++ 
  EHT97590.1 127 TKSSRGFESTTLAAIAGRIAKKHQL------KLVGSieSIKIDRVTQYAETDVSFLRRLASEYGYAVKVVS----DQLIFSH-LAT---LRGQEPVKQL 211
                 57899****************8633......34443447*****************************998....5676665.444...4467888888 PP

   Phage_GPD 175 rqsgteae..reaitrfaearrlapgkvtlrdydykkpkadlsaeaaqpraaasalevydypg.dyaskaegerlarlrlealrararrfsgesnvrg. 269
                 ++++ ++   r++i r+ ++ +++ +k++ +     +++  +s + + ++++   ++v+   + + +s+    + ar+++++  ar+++++  +++   
  EHT97590.1 212 KPQDVASFslRDTINRVYKSAKVKHQKSSDKKLIVYEADGGTSESDK-QTKG---GKVTSADTlKVNSRVSDPDTARIKADSALARHNEYQQNGSLTLm 306
                 77666664678888888877777777777777766555555544442.2322...33333333345666777778888888888888888876665555 PP

   Phage_GPD 270 ....lapGrtftlsghprkaaanreylitsvehhgenn 303
                     l++G++++l g+    +  + +lit+++h   +n
  EHT97590.1 307 gtpqLTAGNKIELVGFG---QLSGPWLITTARHAFDRN 341
                 5777***********65...489**********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2773.12
//
Query:       EHT97591.1  [L=170]
Description: gpV family phage P2 baseplate assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-19   68.0   0.0    8.5e-19   67.5   0.0    1.2  1  Phage_base_V  Type VI secretion system, phage-baseplate injec
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.049   13.2   0.0    1.3  1  DUF4998       Domain of unknown function


Domain annotation for each model (and alignments):
>> Phage_base_V  Type VI secretion system, phage-baseplate injector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   9.5e-23   8.5e-19      12     112 .]       7     109 ..       4     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 9.5e-23
                   EEEEEEEEETTTTEEEEE..ET.TEEXXXEEEXXSXBSSSBXXXXXXTTXEE.EEEEXXTTTXXEEEEEEEXXSSSXXSXXBTS-EEEE-TTS-EEE CS
  Phage_base_V  12 rlGvvaevdlaaarvrvk..tg.dlltdwlrwlaarAGktrswrapsvGEqv.vllspsGelatavvlpglysdafpapsnsadaevirfpDGavie 104
                   ++G+v++vd+++ ++rv+  +  +l t+wl++l+    ++++++ p vGEqv vll ++G  + +v+l ++ysd  + p ++++++ ++++DGa ++
    EHT97591.1   7 QVGTVSAVDADKVQARVRlpECdNLRTNWLNVLQRNTQNNKDYWLPDVGEQVeVLLDANG--EDGVILGAVYSDVDKPPFSDKNVRGTKYADGAEFS 101
                   579******99966666622543678**************************55666666..58********************************* PP

                   EETTTTEE CS
  Phage_base_V 105 Ydtaakal 112
                   Y++a+++l
    EHT97591.1 102 YNRATHTL 109
                   *****987 PP

>> DUF4998  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.4e-06     0.049       9      58 ..      92     141 ..      85     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-06
     DUF4998   9 kkylkegeivYlgkvdslkafsGknrvklkwllvsdpkitkakifwnnkk 58 
                  ky+++ e  Y+    +l+++ G +rv+++ ++    k +++ ++ +  +
  EHT97591.1  92 TKYADGAEFSYNRATHTLTVKGGIERVVIEVAVGISLKGKTIDLTADTTT 141
                 69*****************************9999888888777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1245.84
//
Query:       EHT97592.1  [L=115]
Description: putative bacteriophage baseplate protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-10   38.9   0.0    6.3e-10   38.7   0.0    1.1  1  GPW_gp25  Gene 25-like lysozyme
     0.0061   16.6   0.0     0.0079   16.3   0.0    1.2  1  DUF2634   Protein of unknown function (DUF2634)


Domain annotation for each model (and alignments):
>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0     7e-14   6.3e-10       3      81 ..      21      95 ..      19     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 7e-14
                HHHHHHHHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--CHHHHHHHHHHHHHHHH-TTEEEEEEEE......CCCCTE CS
    GPW_gp25  3 lresvrrdleiLLntfpgervsvlnyGlpllallfaslsedreriareireailrfEpRirlvsveveveeededargr 81
                  +++ + ++i+L t  g+   ++++G++l+ + + + ++   ++ re  +ai+r+EpR +l sv+ +ve e    + +
  EHT97592.1 21 GLDDIWQAIQIILRTPRGSDPHRPEFGSNLHLYIDWPIDRAIPHVVRESVDAIRRWEPRCQLMSVKPAVEGE----HLT 95
                5689***********************************899999999999**************8844433....344 PP

>> DUF2634  Protein of unknown function (DUF2634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.8e-07    0.0079      19      59 ..      17      56 ..      11      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.8e-07
     DUF2634 19 kivdglEalkqwiykalkTeryryliYsenYGveledligk 59
                +iv+gl+ + q+i+ +l+T+r++ +   +++G++l+ +i  
  EHT97592.1 17 EIVRGLDDIWQAIQIILRTPRGS-DPHRPEFGSNLHLYIDW 56
                79*********************.999*********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 861.20
//
Query:       EHT97593.1  [L=367]
Description: phage-related baseplate assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-73  246.4   0.5    3.8e-73  245.8   0.5    1.3  1  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.8   0.5   2.1e-77   3.8e-73       1     254 [.      69     326 ..      69     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 245.8 bits;  conditional E-value: 2.1e-77
  Baseplate_J   1 rgeyLdrlgelevgvtRkpAtkAsgtvtftgeag....tvIpaGtrvstadglsfatted.titagqgsatvkvtaeeaGaagN..vpagtsllldta 91 
                  r++++d+lgel vgv+R++A++A++t++f+++++    ++IpaGtrvs++d++ fat++d +++ag   ++ ++t++e+GaagN  +pa+ s+ll ++
   EHT97593.1  69 REPMIDYLGEL-VGVYRLAAQPATTTLQFSVDEAlaidVLIPAGTRVSASDSIIFATDTDvVLKAGLLLVNATATCTEPGAAGNgwQPAQVSQLL-DE 164
                  589********.9************************************************************************9999999999.99 PP

  Baseplate_J  92 iagiqsvavantkvssgGadiEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwngpGtVkvvilldngglPtaellakVqayis 188
                  i+  ++ +v+n  +ssgG ++E++++lreRi+la+++++++G++ +Y+++a+++ +++++++vl++   pGtV++++ll++g lP++++l+ V++ +s
   EHT97593.1 165 ID-NVDLQVTNLAASSGGSEQEDNDRLRERIKLAPESFTNAGSRMAYRFHAMQAhPNIVDVAVLSP--VPGTVELYPLLSTG-LPDDSILTLVESFCS 258
                  99.66778888899****************************************************..9**********999.*************** PP

  Baseplate_J 189 .eglrPvtaevtvlaptekavnitat.lllaegtdseavkqaveaaiqayfkeeakp.ggtivlsqiea 254
                   e++rP+t++v +++p++++++i+a+ +++ +++d   +k+++++aiq+++++++++ g++iv+sqi +
   EHT97593.1 259 dEKVRPLTDTVRAKTPVQVDYAIEANiTIY-RDQDANSIKDNANSAIQNWVASRTATlGRDIVPSQIIS 326
                  **************************5555.5688899999**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2663.00
//
Query:       EHT97594.1  [L=157]
Description: putative bacteriophage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-28   96.9   0.0    1.1e-27   96.6   0.0    1.1  1  Tail_P2_I  Phage tail protein (Tail_P2_I)


Domain annotation for each model (and alignments):
>> Tail_P2_I  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0     6e-32   1.1e-27      32     136 .]       5     127 ..       1     127 [. 0.92

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 6e-32
   Tail_P2_I  32 pdtcpaelLpwLAwelsv..dgWdeawseeakRavikeaielhrlkGTpaavrrvlealgfg.veitE........................Wweyrkp 103
                 +d +++++LpwL++++s+  dgW+ a+s++++R +ik+aielhr+kGTp+++r++++++gfg v+++E                        W+ y   
  EHT97594.1   5 VDIVDSSALPWLGEQFSLfgDGWELAESDDVRRMLIKSAIELHRYKGTPWSIREIIRRFGFGeVDLIEgtgqigydgkhtynglfvhgdaeaWAVY--- 100
                 67899********************************************************88********************8777777777666... PP

   Tail_P2_I 104 ytfkvelevs.eqgiteeqaaelrrlvaaakpar 136
                        +v+ +q+it++qaa lr+++aa++par
  EHT97594.1 101 -------RVIlQQPITNDQAALLRQTLAAFAPAR 127
                 .......444489*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1236.99
//
Query:       EHT97595.1  [L=280]
Description: bacteriophage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.066   12.9   0.0    1.9  2  SWI2_SNF2  SWI2/SNF2 ATPase
      0.021   14.7   0.0      0.045   13.6   0.0    1.5  1  MarR_2     MarR family
       0.18   12.2   0.1       0.55   10.6   0.0    1.8  2  Rrf2       Transcriptional regulator


Domain annotation for each model (and alignments):
>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.12   7.2e+02     152     160 ..      76      84 ..      46     103 .. 0.69
   2 ?   12.9   0.0   1.1e-05     0.066      69     169 ..     105     260 ..      93     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.12
   SWI2_SNF2 152 gFTGTPilk 160
                  FTGTP   
  EHT97595.1  76 TFTGTPTAP 84 
                 7*****875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.1e-05
   SWI2_SNF2  69 fakageekpkqaesrkeLkellekesekiifttiqKfeee.ek.......................................................e 111
                 +a++  ++p++ ++ keL + l  ++++  +t+++K++e+ +k                                                       +
  EHT97595.1 105 LAALAGSAPETLDTLKELADAL-GNDPNFATTVLNKLAEKlAKdqngadipdpalfvknlglgegakmpaatlsgstsgyviipaligsvnrvfvfqwT 202
                 4455667788999999******.66999*********854322457899**********************************************9997 PP

   SWI2_SNF2 112 klevlsereniivlvDEaHRsqygelakklrkalpnaafigFTGTPilkkdkktkevF 169
                 +++v  + +  +v+vD +    + +   ++++al+n  +   TGTP ++++   +++F
  EHT97595.1 203 SVSVPPSTDGSLVIVDASWPMPFPTACMSIMQALNNSLIYSTTGTPFSSSRIVDRSKF 260
                 77777777888***********************************998775555555 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.5e-06     0.045       9      47 ..     103     142 ..     101     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-06
                 HHHHHHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2   9 rvLaaLgrrpgrdl.tvgelarrlglsksavsrilkrLva 47 
                  +LaaL+ + ++ l t +ela++lg ++  ++ +l++L +
  EHT97595.1 103 KALAALAGSAPETLdTLKELADALGNDPNFATTVLNKLAE 142
                 589*******99555***********************87 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   9.9e+03      62      70 ..      51      59 ..      38      62 .. 0.80
   2 ?   10.6   0.0   9.2e-05      0.55       7      51 ..      98     142 ..      94     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
                -TCEEESSH CS
        Rrf2 62 gGGyrLakp 70
                +GG  Lak+
  EHT97595.1 51 KGGTDLAKH 59
                688888886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHH CS
        Rrf2   7 teyalhallyLakeeeeepvsseeiaerqnispsylekilakLrk 51 
                 te++ +al+ La  + e+  +++e+a+  +  p+++  +l+kL++
  EHT97595.1  98 TEFVAKALAALAGSAPETLDTLKELADALGNDPNFATTVLNKLAE 142
                 78899*************9************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2052.14
//
Query:       EHT97596.1  [L=136]
Description: hypothetical protein CKS_5667 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   85.9   0.1    2.9e-24   85.7   0.1    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   1.6e-28   2.9e-24      12     130 .]       8     132 ..       4     132 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1.6e-28
   Caudo_TAP  12 kieydkeggelpesvvevs.dinee.lkiqpkgkflvsdgeglpawvedk...keeqiqqAeqekqqllaqAseqiaplq..davdlgiatdeEkaaLl 103
                 k+ y ++ g +p++v+++s +  ee  ++ p gk l  d++  p+wv+++   ++e+i+ Ae  k +++ +A++ +++ q   ++++g++  +E +++ 
  EHT97596.1   8 KQLYVDA-GTWPDDVIAISeETAEEfNQQFPIGKTLSHDENSQPCWVDIPpptHDELIAMAELDKLRRIGEANNFMNDKQwsGKAAIGRLKGDELERYG 105
                 5556666.***********977776699************************************************9877779**************** PP

   Caudo_TAP 104 awkkYrvlLnrvDvslapdieWPeqPe 130
                  w +Y+++L +vD+s+apdi+WP qPe
  EHT97596.1 106 LWLDYLDALDAVDTSSAPDIDWPIQPE 132
                 **************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1003.70
//
Query:       EHT97597.1  [L=42]
Description: hypothetical protein CKS_5668 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   48.0   0.1    1.4e-12   47.9   0.1    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g
  ------ inclusion threshold ------
      0.011   16.5   0.1      0.012   16.5   0.1    1.0  1  DUF469     Protein with unknown function (DUF469)


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   1.5e-16   1.4e-12      91     129 ..       2      40 ..       1      41 [. 0.97

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.5e-16
   Caudo_TAP  91 lgiatdeEkaaLlawkkYrvlLnrvDvslapdieWPeqP 129
                 lg +++++ka+L  w+ Y +++++vDvs+apd+ WP+ P
  EHT97597.1   2 LGDISEKNKAKLSSWMAYKTAVKAVDVSTAPDVIWPAPP 40 
                 899**********************************99 PP

>> DUF469  Protein with unknown function (DUF469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.5   0.1   1.3e-06     0.012      68     101 .]       3      36 ..       1      36 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
      DUF469  68 gsvteedreaveawlkarsevkevevseLvDawy 101
                 g ++e++++++++w++ ++ vk+v+vs   D+ +
  EHT97597.1   3 GDISEKNKAKLSSWMAYKTAVKAVDVSTAPDVIW 36 
                 889**************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 320.85
//
Query:       EHT97598.1  [L=193]
Description: Hin family DNA-invertase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-45  152.8   0.2      1e-44  152.2   0.2    1.2  1  Resolvase  Resolvase, N terminal domain
    3.4e-13   49.4   0.1    1.5e-12   47.4   0.0    2.0  2  HTH_7      Helix-turn-helix domain of resolvase
     0.0071   16.1   0.0      0.017   14.9   0.0    1.6  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.014   16.0   0.2      0.026   15.1   0.2    1.5  1  HTH_32     Homeodomain-like domain
      0.018   14.8   0.1      0.083   12.7   0.1    2.2  2  HTH_38     Helix-turn-helix domain
      0.022   14.5   0.0      0.047   13.4   0.0    1.5  1  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
      0.067   13.2   1.8        0.4   10.7   0.1    2.4  2  HTH_29     Winged helix-turn helix
      0.069   12.9   0.0       0.14   11.9   0.0    1.5  1  HTH_psq    helix-turn-helix, Psq domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.2   4.5e-48     1e-44       1     145 [.       3     136 ..       3     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 4.5e-48
                 EEEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEE CS
   Resolvase   1 aigYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvs 99 
                 +igY+RvSt +q+   + Q++al+ + +++   i   feD+ +SG+ + Rpglkr+l+ + +  gd+lvv+kldRL+Rsv++l+ l+ el+e+g++++s
  EHT97598.1   3 VIGYIRVSTIDQN--SDLQRNALTSANCDR---I---FEDR-MSGKVASRPGLKRALKCVNS--GDTLVVWKLDRLGRSVKNLIALISELHERGAHFRS 90 
                 69***********..***********9666...9...****.********************..*********************************** PP

                 SS..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 100 ldegidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 l+++idtst+mgr+++++++alae+ereli ert +glaaa+a+G+
  EHT97598.1  91 LTDSIDTSTAMGRFFFHVMSALAEMERELIVERTLAGLAAARAQGR 136
                 **99*****************************************8 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.89     2e+03      10      21 ..      74      85 ..      69      90 .. 0.79
   2 !   47.4   0.0   6.6e-16   1.5e-12       1      43 [.     139     181 ..     139     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.89
                HHGGGGSSTTTT CS
       HTH_7 10 dinrvvkLleeG 21
                 i+ + +L+e G
  EHT97598.1 74 LIALISELHERG 85
                5789999**999 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 6.6e-16
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--SS- CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYRyla 43 
                 GRp +l++++ +++++Ll +G++++++A++++++ sT+YRy++
  EHT97598.1 139 GRPNALKPHEREQIGRLLTKGHTRQQLAIIYGVGLSTLYRYFP 181
                 9****************************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.6e-06     0.017       6      37 ..     148     179 ..     143     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.6e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvyrw 37 
                 eR +i +ll +G+++++ A ++gv  +T+yr+
  EHT97598.1 148 EREQIGRLLTKGHTRQQLAIIYGVGLSTLYRY 179
                 67788899999********************8 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.1e-05     0.026      13      72 ..     124     179 ..     115     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      HTH_32  13 GlegLkdrprrg....rprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyri 72 
                  l+gL+ ++ +g    rp+ l + +r++i +ll ++   + +qla  +     + v  st yr+
  EHT97598.1 124 TLAGLAAARAQGriggRPNALKPHEREQIGRLL-TK-GHTRQQLAI-I-----YGVGLSTLYRY 179
                 4566664433322335*****************.55.458888888.6.....68999999986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   3.2e+03      13      24 ..      78      89 ..      76      99 .. 0.75
   2 ?   12.7   0.1   3.7e-05     0.083       4      39 ..     143     178 ..     140     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38 13 IerllaeGlslr 24
                I  l+++G  +r
  EHT97598.1 78 ISELHERGAHFR 89
                889999997766 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.7e-05
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgrspsTIsR 39 
                  L ++eRe+I rll +G++  + A + g+  sT +R
  EHT97598.1 143 ALKPHEREQIGRLLTKGHTRQQLAIIYGVGLSTLYR 178
                 5899***************99999888877777776 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.047      21      40 ..     161     180 ..     158     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
   HTH_Tnp_4  21 tyqdLayrFgvsestvsrif 40 
                 t q+La+++gv  st +r+f
  EHT97598.1 161 TRQQLAIIYGVGLSTLYRYF 180
                 89*****************9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5      0.13     3e+02      40      62 ..     127     149 ..     120     150 .. 0.78
   2 ?   10.7   0.1   0.00018       0.4       3      32 ..     151     179 ..     149     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.13
      HTH_29  40 Glaalld.rrrsgrprnrlseeqe 62 
                 Glaa++  +r +grp+  l+++++
  EHT97598.1 127 GLAAARAqGRIGGRPNA-LKPHER 149
                 88888886666899986.999887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrw 32 
                 q+ +ll +G+ t +q+A ++g+  +t yr+
  EHT97598.1 151 QIGRLLTKGH-TRQQLAIIYGVGLSTLYRY 179
                 7899******.9*****************8 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.4e-05      0.14      20      37 ..     163     180 ..     157     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
     HTH_psq  20 rkAArkYgiPrsTLwrrk 37 
                 +++A +Yg+  sTL+r++
  EHT97598.1 163 QQLAIIYGVGLSTLYRYF 180
                 89*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1490.55
//
Query:       EHT97599.1  [L=120]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-22   78.4   0.0    5.2e-22   78.3   0.0    1.0  1  adh_short      short chain dehydrogenase
    9.9e-20   71.1   0.1    1.2e-19   70.8   0.1    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    3.8e-07   30.2   0.0    4.1e-07   30.1   0.0    1.0  1  KR             KR domain
  ------ inclusion threshold ------
      0.038   15.0   0.1      0.058   14.4   0.1    1.4  1  LytR_C         LytR cell envelope-related transcriptional att
      0.042   13.3   0.0      0.046   13.2   0.0    1.0  1  Epimerase      NAD dependent epimerase/dehydratase family
       0.18   11.2   0.0       0.21   10.9   0.0    1.1  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   1.7e-25   5.2e-22       3     110 ..       2     110 ..       1     118 [. 0.91

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 1.7e-25
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 ++vt  +sGIG  +a+ la++G+++ +   + ee ++++a  ++e+g++a +iq+D++d  e  +++++ ++klg++dvLvnNAG + +++f +++ e+
  EHT97599.1   2 AIVTASDSGIGSRCAEMLAEQGFDIGItWRSDEEGAQRTARRVEETGQRAETIQLDLADPPEGGKVLQQLIDKLGRIDVLVNNAGANFKADFMDVTWED 100
                 89*************************4555566677788888888***************************************************** PP

                 HHHHHHHHTH CS
   adh_short 101 wervievNlt 110
                 w+++++v + 
  EHT97599.1 101 WRKTFSVVMR 110
                 *****99665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   4.2e-23   1.2e-19       3     104 ..       7     110 ..       5     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 4.2e-23
                   T.TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   3 a.sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                     sgIG  +A+ lae+G ++ +t +++e+ ++r+++ +ee+g+++  +++D +d+ +  ++ +++ +k+g++D+lvnnag   k  ++f+++++e++
    EHT97599.1   7 SdSGIGSRCAEMLAEQGFDIGITWRSDEEgAQRTARRVEETGQRAetIQLDLADPPEGGKVLQQLIDKLGRIDVLVNNAGANFK--ADFMDVTWEDW 101
                   359**************************999999999999987556************************************9..*********** PP

                   HHHHHHHTH CS
  adh_short_C2  96 draldvnly 104
                   +++++v ++
    EHT97599.1 102 RKTFSVVMR 110
                   ****99765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.4e-10   4.1e-07       5     110 ..       4     106 ..       1     114 [. 0.92

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.4e-10
                 EETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HH CS
          KR   5 itGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtae 103
                 +t    g+G   a++lae+g   + ++ Rs   +e ++++ +++e++g + e++++D++d+ +  ++l+++ ++ ++i   ++ Ag+  ++ ++++t e
  EHT97599.1   4 VTASDSGIGSRCAEMLAEQGF-DIGITWRS--DEEGAQRTARRVEETGQRAETIQLDLADPPEGGKVLQQLIDKLGRIDVLVNNAGANFKADFMDVTWE 99 
                 6666679*************6.68999999..77888899*********************************************************** PP

                 HHHHHHT CS
          KR 104 dleqvla 110
                 d+++ ++
  EHT97599.1 100 DWRKTFS 106
                 ***9987 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.9e-05     0.058      11      66 ..       7      62 ..       5      88 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
      LytR_C 11 gvsGlAarvadaLeerGftvgevgnagnadee....ttivyreaaaaaakalaaalglge 66
                + sG+ +r+a+ L+e+Gf++g   ++ ++ ee    t  + +e + + a++++ +l  + 
  EHT97599.1  7 SDSGIGSRCAEMLAEQGFDIGI--TWRSD-EEgaqrTARRVEETG-QRAETIQLDLADPP 62
                579*****************99..33333.334555444443333.47888888886444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.5e-05     0.046      10      91 ..      11     104 ..       2     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase  10 iGsalvkallekgyevigldrlssasntarledl.......elveldltdrs....alerlfkee.qpdavihlAavggvaassedpadfiekn 91 
                 iGs  ++ l+e+g ++    r  +++++   +++       e ++ldl d+      l++l+++  ++d+ ++ A+    a+ ++   + ++k+
  EHT97599.1  11 IGSRCAEMLAEQGFDIGITWRSDEEGAQRTARRVeetgqraETIQLDLADPPeggkVLQQLIDKLgRIDVLVNNAGANFKADFMDVTWEDWRKT 104
                 9************885444444444444444444579*************9877778999999999*******999887777777666666665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     7e-05      0.21       9      73 ..      11      70 ..       4      94 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
                   HHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd  9 iGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73
                   iGs  ae+L e+g+++  i+ rs++  ++r ++  +    e+ ++ + ++ Dl D  +  ++l++
     EHT97599.1 11 IGSRCAEMLAEQGFDIG-ITWRSDEEGAQRTARRVE----ETGQRAETIQLDLADPPEGGKVLQQ 70
                   9**************95.555555556666655443....34678999*******8776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 972.72
//
Query:       EHT97600.1  [L=58]
Description: DicA family transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   15.3   0.4      0.027   15.2   0.4    1.0  1  KMP11     Kinetoplastid membrane protein 11


Domain annotation for each model (and alignments):
>> KMP11  Kinetoplastid membrane protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.4   1.5e-06     0.027      35      88 ..       3      56 ..       1      58 [] 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-06
       KMP11 35 pdeatlspemkehyekfekmikehtekfnkkmrehsehfkakfaelleqqkaaq 88
                p+   lsp+ ke  e f+ +     e     +r   e f + f ell+ +k +q
  EHT97600.1  3 PQIQELSPQHKELIELFDALPASEQEAQLSELRARVENFSRLFDELLQARKRSQ 56
                67788***************9999999999*******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 455.15
//
Query:       EHT97601.1  [L=37]
Description: hypothetical protein CKS_1642 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 285.07
//
Query:       EHT97602.1  [L=289]
Description: hypothetical protein CKS_1643 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2214.73
//
Query:       EHT97603.1  [L=248]
Description: DnaC family DNA replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-19   69.9   0.0      3e-19   69.4   0.0    1.2  1  IstB_IS21  IstB-like ATP binding protein
    3.1e-08   33.8   0.0    3.9e-08   33.4   0.0    1.1  1  Bac_DnaA   Bacterial dnaA  protein
     0.0082   15.9   0.0      0.021   14.6   0.0    1.6  1  RuvB_N     Holliday junction DNA helicase RuvB P-loop domain
     0.0087   16.5   0.0      0.015   15.7   0.0    1.4  1  AAA        ATPase family associated with various cellular act
  ------ inclusion threshold ------
      0.037   13.5   0.0      0.064   12.7   0.0    1.3  1  KTI12      Chromatin associated protein KTI12
      0.079   13.0   0.2       0.66   10.0   0.2    2.3  1  AAA_5      AAA domain (dynein-related subfamily)
       0.12   12.1   0.1       0.45   10.2   0.1    2.0  1  AAA_30     AAA domain
       0.12   12.4   0.1       0.21   11.6   0.1    1.4  1  CbiA       CobQ/CobB/MinD/ParA nucleotide binding domain
       0.12   11.5   0.2       0.46    9.6   0.1    1.8  2  PIF1       PIF1-like helicase


Domain annotation for each model (and alignments):
>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.5e-22     3e-19      35     163 ..      89     219 ..      57     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.5e-22
   IstB_IS21  35 vkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklar.alkrllkvdllilDdlgllpldqaeaellfe 132
                 +++  +++f +   ++v+ G +G+GK hla+a+g    +++ svl v+v+dL+ ++++  + g+ +   l++l +vdll+lD++g+++ +q+e+ ll +
  EHT97603.1  89 LAKSYAMNFGNGFTSFVFSGSPGTGKNHLAAAIGNYLLAQNRSVLIVTVADLMLRVRACYDGGQSEAaLLDELDRVDLLVLDEVGIQKGSQHEKVLLNQ 187
                 4444566677777889*****************************************99988887651679**************************** PP

   IstB_IS21 133 viekrye.rrsiiitsnlpfaewdevlgdatl 163
                 v+++r    +++ + +nl+  e  ++lg+ ++
  EHT97603.1 188 VVDRRLAaMKPVGVLTNLNYDELAATLGERVV 219
                 ****9862578889999998888887776554 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     2e-11   3.9e-08       1     157 [.      67     224 ..      67     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2e-11
                 --SS-SGGG-.---TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHT..T-HHHHHHHHT CS
    Bac_DnaA   1 LnkrytFetF.viGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrd..kkaeefkeklr 96 
                 L+++ tF ++ v+G + r Al  a++ a + g+ +  +++ g+ G Gk HL  aign++l+++++  v+ +t  + + + v+a  d  ++ +++ ++l 
  EHT97603.1  67 LHRNCTFKNYeVKGDGQRHALSLAKSYAMNFGNGFTSFVFSGSPGTGKNHLAAAIGNYLLAQNRS--VLIVTVADLMLR-VRACYDggQSEAALLDELD 162
                 567889*99989***********************************************988776..555666666665.566666456778899**** PP

                 T-SEEEEE-GGGGTT-HHHHHHHHHHHHHHHTTT-EE.EEEESS-TTT-SS--HHHHHHHHS CS
    Bac_DnaA  97 kvDvLliDDiqflagkektqeelfhtfnalleegkqv.vlssDrsPkeleeledrlrsrfea 157
                 +vD+L++D++   +g ++ +  l ++++  l + k v vl+   + +  ++l +r+  r+++
  EHT97603.1 163 RVDLLVLDEVGIQKGSQHEKVLLNQVVDRRLAAMKPVgVLTNLNYDELAATLGERVVDRLKM 224
                 **********9877777666666677776666666663555555555556777777777765 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     1e-05     0.021      16     113 ..      84     193 ..      69     205 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
      RuvB_N  16 keklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklk....itsgPvleka.......gdlaalltnleekdvlfideihrls.ravee 102
                 ++ l+++ + a + ++     +++G+PG Gk  la+ i + l ++ +    +t +  + +        +  aall +l++ d+l +de+   + ++ e 
  EHT97603.1  84 RHALSLAKSYAMNFGNGFTSFVFSGSPGTGKNHLAAAIGNYLLAQNRsvliVTVADLMLRVracydggQSEAALLDELDRVDLLVLDEVGIQKgSQHEK 182
                 5566777777777778888899*************99988876665422224666655554112221134699***************97544145666 PP

      RuvB_N 103 vlysamedfrl 113
                 vl + + d rl
  EHT97603.1 183 VLLNQVVDRRL 193
                 77777777666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.4e-06     0.015       2      96 ..     105     191 ..     104     225 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.4e-06
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgv 96 
                 +++G pGtGK  la a+ + l   ++++l + +++l+         ++r++ +  +++a     ++DE+d++     ++   +++++  ++Ll+++ + 
  EHT97603.1 105 VFSGSPGTGKNHLAAAIGNYLlaqNRSVLIVTVADLM--------LRVRACYDGGQSEA----ALLDELDRVDLLVlDEVGIQKGSQHEKVLLNQVVDR 191
                 689*****************85556777777777777........67777777666665....455555554333343444444444555555555444 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.2e-05     0.064       5      56 ..     105     157 ..     104     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
                 EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSS.S--GGGHHHH CS
       KTI12   5 vltGlPssGKstrakeLakaleeekrsvvviddeslgiekds.ykdsakekal 56 
                 v++G P +GK  +a+ + ++l +++rsv ++  + l ++    y+  ++e al
  EHT97603.1 105 VFSGSPGTGKNHLAAAIGNYLLAQNRSVLIVTVADLMLRVRAcYDGGQSEAAL 157
                 899****************************9777776555448877777666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00033      0.66       2      32 ..     104     137 ..     103     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00033
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvql 32 
                 ++  G pGtgK+ la  +   l   nr+v++v  
  EHT97603.1 104 FVFSGSPGTGKNHLAAAIGNYLlaqNRSVLIVTV 137
                 5678**************9999998888888865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00023      0.45      21     108 ..     104     183 ..      90     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaal 108
                  v  G +GtGK ++ +a+ + + a++++v++++    + +v a  +   +++ a ll++l      ++ +ll+ DE+g    +q +++
  EHT97603.1 104 FVFSGSPGTGKNHLAAAIGNYLLAQNRSVLIVTVADLMLRVRA--CYDGGQSEAALLDEL------DRVDLLVLDEVGIQKGSQHEKV 183
                 5789**************9999999999999987655543322..333556666677444......4459999999998865555554 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00011      0.21       3     100 ..     105     222 ..     103     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                 EEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH...............CCHCCCHHHHHHCHCHHHH......EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxx....xxxxxxxx RF
        CbiA   3 iastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep...............dlkrllellealgkkkall....lkiagvvl 81 
                 + s++ G+GK  laa+++ +l  +++ Vl v  aD +    a ++g + + +                +++++++  ++l +++ +     +k++gv+ 
  EHT97603.1 105 VFSGSPGTGKNHLAAAIGNYLLAQNRSVLIVTvADLMLRVRACYDGGQSEAALldeldrvdllvldevGIQKGSQHEKVLLNQVVDRrlaaMKPVGVLT 203
                 779999**************************99***99999888888888889999999999999997777666655555554444667788888888 PP

                 EEESS...-TTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        CbiA  82 nrvdgeneetllkealeel 100
                 n    e++ tl +  +++l
  EHT97603.1 204 NLNYDELAATLGERVVDRL 222
                 8877776666666666655 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00023      0.46      23      57 ..     102     136 ..      80     148 .. 0.77
   2 ?   -0.3   0.0      0.24   4.7e+02      94     121 ..     155     182 ..     143     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00023
                 S-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEE CS
        PIF1  23 klfFvtGsgGtgKtflwkallkklrsegkivlavA 57 
                  +f ++Gs GtgK  l  a+ ++l ++++ vl v 
  EHT97603.1 102 TSFVFSGSPGTGKNHLAAAIGNYLLAQNRSVLIVT 136
                 457789***********************999886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.24
                 CCCHHHHHC-SEEEEECGGGSBHHHHHH CS
        PIF1  94 sklaellkktsliiwDEapmverecfea 121
                   l ++l +++l+++DE+ + + +  e+
  EHT97603.1 155 AALLDELDRVDLLVLDEVGIQKGSQHEK 182
                 5677899999*******99887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1894.00
//
Query:       EHT97604.1  [L=72]
Description: hypothetical protein CKS_5486 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 559.75
//
Query:       EHT97605.1  [L=43]
Description: hypothetical protein CKS_5487 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       138  (0.00769703); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 346.47
//
Query:       EHT97606.1  [L=273]
Description: PI protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-26   91.1  11.8    9.9e-26   90.9  11.8    1.0  1  Rep_3     Initiator Replication protein
  ------ inclusion threshold ------
      0.096   12.3   0.6       0.21   11.2   0.6    1.5  1  40S_S4_C  40S ribosomal protein S4 C-terminus


Domain annotation for each model (and alignments):
>> Rep_3  Initiator Replication protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9  11.8   1.1e-29   9.9e-26       2     222 .]      11     254 ..      10     254 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 1.1e-29
                 S-EEEEEGGGHHHHHHS-HHHHHHHHHHHHTS-TT..S---SSEEEEHHHHH....HHHT--HHHHHHHHHHHHH-B---S............------ CS
       Rep_3   2 kelvvksndlvqaaykltlmelklfvlalskikkk..dedekeykisasdlaeellgvkaegaykrlkealerLdkkdfki............geekde 86 
                 k+++ ++n++++   +l l+ ++++++a++++++k   ++++ ++++a ++++   gv+ + ayk+ k+ +++L+  ++ki            + +kd+
  EHT97606.1  11 KTKIRHRNEINNTFSSLPLAARRILFMAMAQLDSKngLTEGQIFRVTAAEYSNIA-GVDISVAYKQMKDGVNELQASVIKInksqllkdipnlELKKDS 108
                 7899**********99*******************88666666*********877.9999989***********************9976555555555 PP

                 ----BSEEEEEEETTT....TEEEEEE-TTTGGGSS--GGGEEEEEHHHHHH---HHHHHHHHHHHHTSS-EE...EEEEHHHHHHHH.T-........ CS
       Rep_3  87 eevenlvlwvgiikavkykegkvelefsdtlkpyllelkknftkyelaefskLrskyskrLyellkqfkstgk...deisleelkellglp........ 174
                     nl+ ++ ++     +eg++ + fs  ++py+ +lk+ +t+  l  +++L  + s++ y+ l++  s+gk   + i++ elk+ lgl         
  EHT97606.1 109 LLSLNLTDYCVYTE----SEGYINIVFSRSIEPYISKLKDSYTTQVLISSVRLTDSNSSTFYQFLRKKISEGKvkgFDIEISELKNELGLYaieegtkd 203
                 55555555555544....78*********************************************77767777333569*******99999999***** PP

                 .EESS-SHHHHHHHTHHHHHHHHHHHSSE.EEEEEEE.--TTS--EEEEEE CS
       Rep_3 175 .kskykrfkdlkkrvlkpaikeineltdi.nleyeke.kkGrkitsieFti 222
                    +y++fkd++k+ l + ik+i  lt+i  l++e++ k+ rk ++++F++
  EHT97606.1 204 kIYYYPQFKDFNKDYLSKNIKKIVSLTEIkGLKFEIIeKQARKASKLRFSY 254
                 99***********************************99**********86 PP

>> 40S_S4_C  40S ribosomal protein S4 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   2.4e-05      0.21      22      46 ..     224     248 ..     221     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.4e-05
                 S-SS---SS-S----HHHHHHHHHH CS
    40S_S4_C  22 kpwvsLPkgkGiklsiaeerdkrla 46 
                 k +vsL + kG+k  i+e+++++ +
  EHT97606.1 224 KKIVSLTEIKGLKFEIIEKQARKAS 248
                 889****************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2232.37
//
Query:       EHT97607.1  [L=138]
Description: hypothetical protein CKS_5489 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1196.20
//
Query:       EHT97608.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-22   80.2   0.0      2e-22   79.5   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.2e-10   40.9   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    2.9e-09   37.4   0.5    2.5e-08   34.4   0.1    2.5  2  HTH_32        Homeodomain-like domain
    4.1e-07   29.9   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    4.8e-06   26.1   0.2    4.8e-06   26.1   0.2    2.6  3  HTH_33        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.8   0.2      0.062   13.8   0.2    1.4  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.053   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0     9e-26     2e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 9e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97608.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKYLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97608.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97608.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97608.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97608.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.4   0.1   1.1e-11   2.5e-08       2      73 .]      57     136 ..      56     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT97608.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97608.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqcsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776656526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97608.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT97608.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   2.1e-09   4.8e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?   -1.8   0.1       1.1   2.6e+03      29      42 ..     241     254 ..     236     255 .. 0.82
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.1e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97608.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk l+ +y++++
  EHT97608.1 241 RLLKYLKATYRRAK 254
                 89999999999886 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97608.1 314 SSMWQLLKK 322
                 789999986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97608.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97608.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.8e-05     0.062      12      68 ..      27      84 ..      18      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97608.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT97608.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97608.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2883.23
//
Query:       EHT97609.1  [L=118]
Description: hypothetical protein CKS_5491 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.4   0.0       0.03   14.2   0.0    1.1  1  DUF2726   Protein of unknown function (DUF2726)


Domain annotation for each model (and alignments):
>> DUF2726  Protein of unknown function (DUF2726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.7e-06      0.03       4      80 ..       8      84 ..       5      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-06
     DUF2726  4 llnreEraflsaLkkavgdelrvlakVslsdvlkvekgtsksqsqealnrisakrvDfllcdkadlkpvavIeldga 80
                ++n++  +  + Lk  +++++ v+   +ls++l +     + +  + ++ i++  + ++++d ++ kp+++I +d+ 
  EHT97609.1  8 FINEKYTKAVNILKDNLKENYHVFYGMRLSEILFPASEYGTDAFFKEFELINSVILPLVIFDLTQRKPMMIISFDKI 84
                6677777889999**********************9999999999****************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 855.62
//
Query:       EHT97610.1  [L=325]
Description: hypothetical protein CKS_5492 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2526.46
//
Query:       EHT97611.1  [L=102]
Description: hypothetical protein CKS_5493 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-05   22.3   0.1    0.00027   20.9   0.1    1.9  1  TraY      TraY domain
    0.00047   20.0   0.3     0.0016   18.3   0.0    2.0  2  RHH_1     Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
      0.034   14.7   1.2      0.058   14.0   0.7    1.6  1  BST2      Bone marrow stromal antigen 2


Domain annotation for each model (and alignments):
>> TraY  TraY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   4.5e-08   0.00027       1      25 [.      50      74 ..      50      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.5e-08
        TraY  1 vtlkLdeetnklLeasaersgRSKr 25
                ++++L+e +++ Lea+a+r+g SK+
  EHT97611.1 50 LNFRLTEAYEEILEAEAQRTGQSKT 74
                69**********************8 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.43   2.6e+03       7      17 ..       2      12 ..       1      21 [. 0.69
   2 !   18.3   0.0   2.7e-07    0.0016       2      35 ..      50      83 ..      49      84 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.43
                EHHHHHHHHHH CS
       RHH_1  7 deellerLdel 17
                d++++++L+ l
  EHT97611.1  2 DKKVVDALQTL 12
                67777777655 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.7e-07
                EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHH CS
       RHH_1  2 vsirldeellerLdelarrrgrSrSelIReAlre 35
                +++rl e + e L++ a r+g+S+  ++++Al++
  EHT97611.1 50 LNFRLTEAYEEILEAEAQRTGQSKTTVLKAALAA 83
                689****************************986 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   9.6e-06     0.058      15      55 ..      43      82 ..      35      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.6e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 15 crnvtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLe 55
                +  + rlL+ +Lt+a e+++eaeaq +  ++t v Lka+L 
  EHT97611.1 43 LTAKARLLNFRLTEAYEEILEAEAQRTGQSKTTV-LKAALA 82
                345679*******************877777765.777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 742.76
//
Query:       EHT97612.1  [L=76]
Description: plasmid partition protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-47  159.1   1.7    2.3e-47  159.0   1.7    1.0  1  ParG      ParG
     0.0043   17.4   0.0     0.0064   16.8   0.0    1.4  1  ParD      Antitoxin ParD


Domain annotation for each model (and alignments):
>> ParG  ParG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   1.7   2.6e-51   2.3e-47       1      76 []       1      76 []       1      76 [] 0.99

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 2.6e-51
        ParG  1 malekahtsvkkmtfGehrdlekvvdspvpsGkskrvnvnfdeekhtrfkaacakkGtsitdvinqlvdnwlkene 76
                m+lekaht+vkkmtfGe+rdle+vv +pv+sGk+krvnvnfdeekh+rfkaacakkGtsitdv+n+lvd+wlkene
  EHT97612.1  1 MSLEKAHTAVKKMTFGENRDLEHVVAAPVSSGKIKRVNVNFDEEKHIRFKAACAKKGTSITDVVNKLVDEWLKENE 76
                9*************************************************************************97 PP

>> ParD  Antitoxin ParD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.2e-07    0.0064       2      38 ..      35      70 ..      34      76 .] 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.2e-07
        ParD  2 srLsIditpeqhqrlkAvAAlqGksikeYvLerllee 38
                +r++++  +e+h r kA+ A +G si + v+++l +e
  EHT97612.1 35 KRVNVNFDEEKHIRFKAACAKKGTSITD-VVNKLVDE 70
                6899999*******************99.55777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 594.64
//
Query:       EHT97613.1  [L=89]
Description: ParF family plasmid partition protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 775.96
//
Query:       EHT97614.1  [L=322]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-29  101.9   1.4    5.7e-29  101.1   1.4    1.4  1  Resolvase      Resolvase, N terminal domain
    0.00062   19.8   1.4      0.033   14.2   0.0    3.0  3  HTH_7          Helix-turn-helix domain of resolvase
     0.0017   18.5   0.0       0.36   11.0   0.0    2.5  2  HTH_17         Helix-turn-helix domain
     0.0023   17.7   0.0     0.0059   16.4   0.0    1.7  1  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
      0.012   15.7   0.1      0.046   13.8   0.1    2.0  1  Trp_repressor  Trp repressor protein
      0.032   14.0   0.1        0.1   12.4   0.1    1.8  1  HTH_38         Helix-turn-helix domain
      0.036   12.9   0.3      0.063   12.0   0.3    1.5  1  Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase
      0.064   12.8   0.2       0.13   11.8   0.2    1.6  1  Shal-type      Shal-type voltage-gated potassium channels, N-
      0.073   12.8   0.2       0.18   11.5   0.0    1.7  2  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   1.4   2.9e-32   5.7e-29       2     146 .]      11     163 ..      10     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 2.9e-32
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvs 99 
                  +Y+R St+eqd    r ++ +  +a e+gl i + ++++  SG+kleRp+l rll+++++   d+l+ve++dRL+R    d+ tl +++r+k++++v 
  EHT97614.1  11 RAYLRASTTEQD--ATRALDTINTFAIERGLSICNYYIEN-ESGSKLERPELFRLLKDCQQ--NDILLVEDVDRLSRLvGEDWNTLKKMIRQKDIRVVA 104
                 58**********..**************************.********************..***************889999999999********* PP

                 SS............SS-.---H.HHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 100 ldeg..........idt.stpm.grlllqilaalaeferelirertkeglaaakakGkk 146
                 ++ +          +d  + ++ + +ll++laa+a+ + e++rer+++g+ +ak++Gk+
  EHT97614.1 105 VNVPttwlasghgdFDSrMFSAiNDMLLDMLAAVARRDYEQRRERQQQGISRAKREGKY 163
                 **755787777755222333334777*******************************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.056   1.1e+02       8      23 ..      85     101 ..      79     105 .. 0.74
   2 ?   -1.2   0.1       1.1   2.2e+03      10      26 ..     142     158 ..     137     158 .. 0.80
   3 !   14.2   0.0   1.7e-05     0.033       6      38 ..     168     200 ..     165     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.056
                 HHHHGGGGSSTTTT.-- CS
       HTH_7   8 kndinrvvkLleeG.is 23 
                  +d+n+++k+++++ i 
  EHT97614.1  85 GEDWNTLKKMIRQKdIR 101
                 459********998665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
                 HHGGGGSSTTTT--STT CS
       HTH_7  10 dinrvvkLleeGisisk 26 
                 d+++ +++ ++Gis++k
  EHT97614.1 142 DYEQRRERQQQGISRAK 158
                 78888899999999876 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.7e-05
                 S-HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   6 lskndinrvvkLleeGisiskIAkevnisRsTv 38 
                 +++ +++ + +L+ +G+s s++ k +++sR+T+
  EHT97614.1 168 VNQSRYDAINRLITSGSSWSQVQKLLGCSRATI 200
                 567789**************************7 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.016        32      16      30 ..      89     103 ..      76     112 .. 0.83
   2 !   11.0   0.0   0.00018      0.36       6      24 ..     188     206 ..     186     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
      HTH_17  16 stvyrlirrgelpaa 30 
                 +t+ ++ir+++++++
  EHT97614.1  89 NTLKKMIRQKDIRVV 103
                 89**********986 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00018
      HTH_17   6 EaAelLgvsrstvyrlirr 24 
                 ++++lLg+sr+t+ + +++
  EHT97614.1 188 QVQKLLGCSRATISNAVKQ 206
                 9*************99986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     3e-06    0.0059      11      40 ..     176     206 ..     170     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3e-06
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 +  l   G s++++ ++Lg+sr T+++ +k 
  EHT97614.1 176 INRLITsGSSWSQVQKLLGCSRATISNAVKQ 206
                 555555699******************9996 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.3e-05     0.046      36      77 ..     170     211 ..     164     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
  Trp_repressor  36 aqRlqvvkeLLkeelsqreIaeelgvSiAtItRvsrsLktgs 77 
                    ++R+  +++L++ + s +++++ lg S AtI+   +++k+++
     EHT97614.1 170 QSRYDAINRLITSGSSWSQVQKLLGCSRATISNAVKQMKSRN 211
                    57999999************************9888888665 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.2e-05       0.1      13      43 ..     176     206 ..     166     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.2e-05
      HTH_38  13 IerllaeGlslreIArrLgrspsTIsRElkR 43 
                 I rl+  G s +++ ++Lg+s+ TIs+ +k+
  EHT97614.1 176 INRLITSGSSWSQVQKLLGCSRATISNAVKQ 206
                 788889999999999*************995 PP

>> Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   3.1e-05     0.063      49     188 ..      53     214 ..      42     297 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
  Peptidase_M32  49 lltseevaellekleeekeeldekekavveelkreykk.....................akkvpaelvealakasakaeaaWreareandfalfep 123
                    +l ++e+ +ll+++++++  l+e+  ++ + + +++++                      ++   ++ ++++ a +       +a +++d+++ ++
     EHT97614.1  53 KLERPELFRLLKDCQQNDILLVEDVDRLSRLVGEDWNTlkkmirqkdirvvavnvpttwLASGHGDFDSRMFSAINDMLLDMLAAVARRDYEQRRE 148
                    566666677777777777766666555555555555555556666666667666665555555567778888888888888889999********* PP

  Peptidase_M32 124 sLeevielkreiaell.edlkkspYdaLldeyepgltvekidalFeelkealvpllkkikeskeke 188
                      ++ i  ++++ ++   + ++s Yda+     +g +++++++l +  ++++ + +k++k++++  
     EHT97614.1 149 RQQQGISRAKREGKYKgRQVNQSRYDAINRLITSGSSWSQVQKLLGCSRATISNAVKQMKSRNQPP 214
                    ****************999*************************************9999988744 PP

>> Shal-type  Shal-type voltage-gated potassium channels, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   6.7e-05      0.13      11      22 ..     221     232 ..     218     234 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
   Shal-type  11 RAAAIGWvPvAr 22 
                 R+AAI WvPvA+
  EHT97614.1 221 RVAAILWVPVAN 232
                 9**********7 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.1e-05      0.18      61     102 ..      46      86 ..      39     104 .. 0.89
   2 ?   -4.0   0.1       5.3   1.1e+04     104     116 ..     123     135 ..     120     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.1e-05
      RuvB_N  61 lkitsgPvlekagdlaalltnleekdvlfideihrlsravee 102
                 ++  sg  le++ +l  ll++ +++d+l+++++ rlsr v e
  EHT97614.1  46 IENESGSKLERP-ELFRLLKDCQQNDILLVEDVDRLSRLVGE 86 
                 677899999997.7999*********************9977 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.3
      RuvB_N 104 lysamedfrldiv 116
                 ++sa++d+ ld++
  EHT97614.1 123 MFSAINDMLLDML 135
                 7899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2606.83
//
Query:       EHT97615.1  [L=150]
Description: DNA-binding protein H-NS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.7   2.3    1.4e-17   64.3   2.3    1.2  1  Histone_HNS      H-NS histone family
  ------ inclusion threshold ------
      0.082   12.8   6.4       0.13   12.2   6.4    1.3  1  MRP-S26          Mitochondrial ribosome subunit S26
       0.11   12.6   1.0        0.2   11.8   1.0    1.3  1  KIP1             KIP1-like protein
          1    9.2   3.6        6.2    6.7   3.5    1.9  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
          3    8.1  13.1        6.4    7.0  13.1    1.5  1  DUF3886          Protein of unknown function (DUF3886)


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   2.3   3.9e-21   1.4e-17       1      92 []      38     133 ..      38     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 3.9e-21
                  XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX----SSS-----EEEEE........---TTT.-SSS.-EEEEES----HHHHHHH..... CS
  Histone_HNS   1 eLkalieelekqeea..leaeerkealaeirelaaeyGltleelaaeakkakkkkakakk...vpaKYr.dpetegetWsGrGrkPkwlkaalaagks 92 
                  +L+a+iee+++++e+  +e++er+++++e+ +l+a +G+++eel++ +  a++++++  k   +p+KY+ ++++e + WsGrGr Pk + +al+ag+s
   EHT97615.1  38 KLNAVIEERREEAEReaAERAERERKRQELLQLIAGEGFSPEELLGLTDDAPNARKS--KlpkAPPKYQfEENGEVKFWSGRGRSPKPIDEALKAGRS 133
                  79999*****99999878**************************9996666665543..2335****98245556788*****************985 PP

>> MRP-S26  Mitochondrial ribosome subunit S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.4   3.6e-05      0.13      65     109 ..      21      64 ..       3      74 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
     MRP-S26  65 ekaeeeeeefkellaiNdewNaelaelReerlkkeaeekkeeile 109
                 +   +e   f++ll++ ++ Na ++e+Ree  ++ ae+ ++e+ +
  EHT97615.1  21 RVFARE-TSFEQLLEMQEKLNAVIEERREEAEREAAERAERERKR 64 
                 444555.69*******************98666555554444333 PP

>> KIP1  KIP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.0   5.4e-05       0.2      19      59 ..      31      71 ..      27      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
        KIP1 19 tlseldekvkemlklieedadsfakraemyykkrpeLielv 59
                +l e+ ek++++++   e+a+ +a +     +kr+eL++l+
  EHT97615.1 31 QLLEMQEKLNAVIEERREEAEREAAERAERERKRQELLQLI 71
                6889**********9999*999999999999********98 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.5    0.0017       6.2      87     117 ..      94     125 ..      21     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
  UBA_e1_thiolCys  87 kqLlynfPkdsktsdGa.pFWsgpKraPkple 117
                      ++L ++ Pk + +++G+ +FWsg  r Pkp++
       EHT97615.1  94 SKLPKAPPKYQFEENGEvKFWSGRGRSPKPID 125
                      6677777999999999779***********97 PP

>> DUF3886  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  13.1    0.0018       6.4      17      52 ..      29      65 ..      25      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
     DUF3886 17 lekLkakkkeLkee.eekrkeeekarreeerkarekn 52
                +e+L++++++L +  ee+r+e+e++ +e+++++r+++
  EHT97615.1 29 FEQLLEMQEKLNAViEERREEAEREAAERAERERKRQ 65
                68*********98549999999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1638  (0.0913604); expected 358.6 (0.02)
Passed bias filter:                      899  (0.0501422); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 1268.68
//
Query:       EHT97616.1  [L=78]
Description: hypothetical protein CKS_5498 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.34    9.6   0.0        0.4    9.3   0.0    1.0  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   2.3e-05       0.4     242     283 ..      11      55 ..       5      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 2.3e-05
                      HHHHHHHHHHHHHHHHH..HTS-TII.IIIHHHHHHHHHHHHHHH CS
  Xan_ur_permease 242 lvavvesvGdiravakv..vgrslkp.kpdlrralladGlatlls 283
                      l++++es+G ++  +++  + ++  +  + l+r+l a+G a+l++
       EHT97616.1  11 LINIFESYGAYIFPDEIeiTAKECNEnGSVLHRGLNAEGWAHLFA 55 
                      89*********9988753355555555889************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 600.01
//
Query:       EHT97617.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT97617.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT97617.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT97617.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3088.62
//
Query:       EHT97618.1  [L=171]
Description: DnaJ-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-10   38.5   0.1    2.9e-09   36.9   0.1    1.8  2  DnaJ      DnaJ domain
  ------ inclusion threshold ------
      0.084   12.9   0.1       0.42   10.6   0.0    2.1  2  DUF4974   Domain of unknown function (DUF4974)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   3.2e-13   2.9e-09       5      55 ..       9      56 ..       5      64 .. 0.89
   2 ?   -2.3   0.0      0.58   5.2e+03      11      21 ..     143     153 ..     139     157 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.2e-13
                HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTS CS
        DnaJ  5 iLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsd 55
                +  +s d +e++Ik++Y+k alkyHPD+n   p  +e  k +n+A+++L+ 
  EHT97618.1  9 VFDLSGDLTEKDIKASYKKAALKYHPDRN---PLGAELMKAVNAAFDFLMA 56
                56788899*********************...999999*********9975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.58
                 TG-HHHHHHHH CS
        DnaJ  11 dasedeIkkaY 21 
                 + s +eI++ Y
  EHT97618.1 143 EHSIEEIREMY 153
                 45667777777 PP

>> DUF4974  Domain of unknown function (DUF4974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15   1.4e+03      45      61 ..       2      18 ..       1      25 [. 0.81
   2 ?   10.6   0.0   4.7e-05      0.42      38      66 ..      71      99 ..      51     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.15
                .HHHHHHHHHHHH--EE CS
     DUF4974 45 sleevLelLektggiky 61
                +++e+L+++ ++g+++ 
  EHT97618.1  2 NIQEALNVFDLSGDLTE 18
                79999**9999998875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4.7e-05
                EEES-.-.HHHHHHHHHHHH--EEEETTE CS
     DUF4974 38 gtfsrnesleevLelLektggikykiegn 66
                ++++  e+le+vL++L+  +gi y++ gn
  EHT97618.1 71 ARYNYGEDLEKVLNTLSGLTGIVYEVIGN 99
                5667889*****************98787 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1406.31
//
Query:       EHT97619.1  [L=72]
Description: hypothetical protein CKS_5501 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 595.79
//
Query:       EHT97620.1  [L=405]
Description: TniQ family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-23   81.9   2.0    1.3e-22   81.0   2.0    1.5  1  TniQ      TniQ


Domain annotation for each model (and alignments):
>> TniQ  TniQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   2.0   7.1e-27   1.3e-22       1     137 []       8     165 ..       8     165 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 7.1e-27
        TniQ   1 pirpepvpdEslsSylaRlaeangvspkellrglfaeskrsladedldlnl.erLaeltglspeeleemtlegyl.....................asv 77 
                 p++p+p+++E+lsS+l+R+a +++++  +ll++ +++ + +  d++ +l+l + L++++g++ ++l+ m ++g++                      sv
  EHT97620.1   8 PLHPAPKEGEALSSWLNRVALCYHMEEPDLLEHDLGHGQVDDLDTAPPLSLlALLSQRSGIELDRLRCMSFAGWVpwlldslddqipdaletyafqLSV 106
                 79*********************************99988888888888779*******************************************8888 PP

        TniQ  78 llekakrekkllgeaisrrglrrsgrryCplClaedgepywrllWrlalvtvCprHqcrL 137
                 ll++ +r++++++ ++++   +++  r+CplCl++ + ++  l+W+l+l+  Cp H+c+L
  EHT97620.1 107 LLPRLRRKTRSITSWRAWLP-SQPINRACPLCLSDPENQAVLLAWKLPLMLSCPLHGCWL 165
                 88888888888888888888.99**********999999999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2879.96
//
Query:       EHT97621.1  [L=94]
Description: NTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 691.19
//
Query:       EHT97622.1  [L=273]
Description: chloramphenicol resistance protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-10   38.8  38.4    5.1e-10   38.8  38.4    1.8  2  MFS_1         Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8  38.4   2.9e-14   5.1e-10     131     352 ..       3     213 ..       1     214 [. 0.80
   2 !    1.6   1.9    0.0058     1e+02     132     166 ..     204     242 ..     202     256 .. 0.62

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 2.9e-14
       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdp...vlwillialllfffgfsgl 226
                 ++ +++gpllg+l+  +lgWra+f +l++ ++ a   ++ + pe++++r    ++ +               ll +     +w++ ++ + ++  f+ +
  EHT97622.1   3 AMVPAVGPLLGALVDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRVAGLQWSQ---------------LLLPVkclNFWLYTLCYAAGMGSFFVF 86 
                 56799*****************************99877777777777777765555...............555552224673333333334466669 PP

       MFS_1 227 ltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..ssavllllvlvliGfglgfvfpslla 323
                 ++  p +++ + g s  l  +ll+a +a+++++ a + gr++ ++g+   l +++++l+++a++la++     +s + +++++ l+G+g++++++ + +
  EHT97622.1  87 FSIAPGLMMGRQGVS-QLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAITEIWalQSVLGFIAPMWLVGIGVATAVSVAPN 184
                 9999999********.45555559999999999999*********************************99656666666688889**99999999999 PP

       MFS_1 324 lasdlappeeagtasglfntags.lggalg 352
                  a + +  + agt+++++  +g+ l g++g
  EHT97622.1 185 GALRGFD-HVAGTVTAVYFCLGGvLLGSIG 213
                 9999996.99********976664666666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.0058
       MFS_1 132 lGailgpllggllasslg....Wravfyilaivsllafv 166
                 lG +l   +g l++s+l     W++v y l+++++++++
  EHT97622.1 204 LGGVLLGSIGTLIISLLPrntaWPVVVYCLTLATVVLGL 242
                 455555555555555555666677777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1932.39
//
Query:       EHT97623.1  [L=114]
Description: mobilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-14   54.0   0.9    2.3e-14   53.6   0.9    1.2  1  MobC      Bacterial mobilisation protein (MobC)


Domain annotation for each model (and alignments):
>> MobC  Bacterial mobilisation protein (MobC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.9   1.3e-18   2.3e-14       1      45 []      57     101 ..      57     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.3e-18
        MobC   1 lreLrgIGnNlNQIAraaNsgqgsqavlaelkeelaeinkeLdql 45 
                 lr+L+g+GnNlNQIAr++Nsg+gs ++  +++++l +i + L++l
  EHT97623.1  57 LRQLAGMGNNLNQIARQVNSGGGSGHDRVQVVAALMAIDAGLERL 101
                 7***************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 867.51
//
Query:       EHT97624.1  [L=162]
Description: conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-56  189.3   0.5    2.6e-56  188.9   0.5    1.1  1  TrbH      Conjugal transfer protein TrbH


Domain annotation for each model (and alignments):
>> TrbH  Conjugal transfer protein TrbH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.9   0.5   1.4e-60   2.6e-56       1     119 []      34     162 .]      34     162 .] 0.97

  Alignments for each domain:
  == domain 1  score: 188.9 bits;  conditional E-value: 1.4e-60
        TrbH   1 vdqqklakdavkqLaalypPaktrlelqqkvpdefGaaLvkelrekGyavlefaperakaaaeataaeat..........glpLryvldeakssnlyrl 89 
                 +dqqkla+dav+qLa+ly+Pa+trlelqq++pd+fG+aLvk+lr+kGya+le+ap+ a+++a+a+aa+++          glpLryvld+a +snlyrl
  EHT97624.1  34 LDQQKLATDAVQQLATLYAPARTRLELQQPTPDPFGQALVKSLRDKGYALLEYAPAGASTQAPASAASQAsapattaasgGLPLRYVLDQAGDSNLYRL 132
                 59***********************************************************99998888889999************************ PP

        TrbH  90 tllvGsqsisrayleqnetlaPagaWvrke 119
                 tl+vG+qsi+r+yl+qn+t+aPag+Wvrke
  EHT97624.1 133 TLMVGNQSITRPYLAQNGTFAPAGYWVRKE 162
                 *****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1174.45
//
Query:       EHT97625.1  [L=299]
Description: TrbG family conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-59  200.3   0.0    3.9e-59  199.9   0.0    1.1  1  CagX      Conjugal transfer protein


Domain annotation for each model (and alignments):
>> CagX  Conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.0   2.2e-63   3.9e-59       6     210 ..      74     297 ..      70     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 2.2e-63
        CagX   6 vvYspgavvrvraapgyvtdielepgEkivevalGdtvrWevept.......kgnhlfvkPteaglktnlvvvTdkRtYsfeLrstekekkklmyrvsf 97 
                 +vY   +   +++a+ +v+d++l+pgE++ ++ lGdt+rW+vep+       + +hl++kP ++gl+t+lvv+T++R+Y+f+Lrs++   +++m++vsf
  EHT97625.1  74 FVY-GAQQPSIVCAVLQVCDVALQPGEQVNSINLGDTARWTVEPAitgsgatEVQHLIIKPMDVGLETSLVVTTNRRSYHFRLRSHR---TEYMPQVSF 168
                 556.3333489****************************************************************************...********* PP

        CagX  98 rypdeeaaaaaaaaaaaaaekkeaqek.....apeklnfdYsvsgsaeiaPervfdDgrfTyirfp..sankelPavfvvdedg......keelvnyrv 183
                 +yp+e++a++ +a ++++++++++++      + ++l+fdY++sgsa+++P+rv++Dgr+T+i++p  ++++e+P++ vv+++g      +++lvnyrv
  EHT97625.1 169 TYPEEAQAKW-DAIQRREKQERTDNTLpatgeYLGDLSFDYELSGSASWKPVRVYNDGRKTIIEMPgtMQQTEAPTLLVVRKEGglftddETVLVNYRV 266
                 **********.444444444444333378899***************************************************88999878999***** PP

        CagX 184 egnylvvdrvakklvLrlG....kevvrien 210
                 +gn ++vd+v+++++L +G    +++v+i +
  EHT97625.1 267 QGNRYIVDTVFDRAILIAGvgssQDRVTISR 297
                 ********************99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2176.43
//
Query:       EHT97626.1  [L=260]
Description: hypothetical protein CKS_5551 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-62  209.9   1.0    4.3e-62  209.7   1.0    1.0  1  VirB8     VirB8 protein


Domain annotation for each model (and alignments):
>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7   1.0   2.4e-66   4.3e-62       1     213 [.      46     258 ..      46     259 .. 0.97

  Alignments for each domain:
  == domain 1  score: 209.7 bits;  conditional E-value: 2.4e-66
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXX.XXXXX-HHHHHHHHHHHHHHH.HHH-B-TTT CS
       VirB8   1 karqfwderigsarvqarnwrlvafvslliavlavgavvlllplktvePyvvevdkttGeveavapa.aekkpsadeavikaflaryvt.vReiyddaa 97 
                 +ar+ w++++g ++ q+++w++++++sllia++ vg+v+ ++++++++Pyvvevdk+ G+++a++p+ a+ k   d +vi+a++a+++  +R++++d a
  EHT97626.1  46 AARRTWNDHVGGVVSQRQTWQVIGILSLLIALAGVGGVIHIGSQSKFIPYVVEVDKL-GQTVAAGPVqAAGKA--DPRVIHAAVADWMScARMVSPDVA 141
                 599******************************************************.*********555555..************************ PP

                 H.HHHHHHHHHT..B-HHHHHHHHHHHSTT-TTSHHHHTTTSEEE.EEEEEEEEEEETTEEEEEEEEEEE.ETTS--EEE.EEEEEEEEE...E-S--- CS
       VirB8  98 lvqdnydkvyll..stgsaakelneyarsnnensPfaqlgketelveveiksvvlaspntaqvrfkettrredgtlaktk.rwtatltfryevkqaptt 193
                 l+++ + k+y++   +++a+ ++ne+ +++ ++sPf++++ke+  v+veik+v++++p+t+qv+++ettr+++gtl+++  +w+a++t+ +  ++++tt
  EHT97626.1 142 LQRKCVFKAYSMlaPNDPATPKMNEWLNGTPDSSPFKRAEKEM--VSVEIKTVIPQTPDTWQVEWVETTRDRQGTLKGQPvTWRALVTTYIAEVTPNTT 238
                 ************999****************************..8******************************88888****************** PP

                 HHHHTT-TT-EEEEEEEEEE CS
       VirB8 194 eeellaNPlGfyVtsyswsk 213
                 +e+l++NPl +yV++ysws+
  EHT97626.1 239 DEQLRNNPLSIYVRDYSWSR 258
                 ******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1882.24
//
Query:       EHT97627.1  [L=682]
Description: TrbE family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-64  218.4   0.0    1.6e-64  217.8   0.0    1.3  1  CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV
    0.00025   20.1   0.0       0.01   14.8   0.0    2.2  1  AAA_10          AAA-like domain
    0.00062   20.3   0.0       0.02   15.4   0.0    2.8  3  ABC_tran        ABC transporter
     0.0015   18.8   0.1        1.9    8.8   0.0    2.4  2  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV transporter system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.8   0.0   3.6e-68   1.6e-64       3     206 .]      48     261 ..      46     261 .. 0.98

  Alignments for each domain:
  == domain 1  score: 217.8 bits;  conditional E-value: 3.6e-68
  CagE_TrbE_VirB   3 LsereerellfselleflnflinGenepvklpsgsmlldeliat.....skvpfgkdkfiirtakd....ekfasilsikeY.peetrsslldsl 87 
                     +se++ re++++++l++l+f+++G ++pv+lps++m+ld++i++     + vp+ ++kfi+ +a++    e+++++ls++++ p+e+r+s+++++
      EHT97627.1  48 VSEEG-REVTHDDFLSWLQFCVTGLHHPVMLPSNPMYLDAVIGGqelwgGVVPKIGRKFIQVVAIEgfplESTPGVLSALAElPSEYRWSSRFIF 141
                     56666.7**************************************************************************************** PP

  CagE_TrbE_VirB  88 lsldieliitesfskiskqkalsklkk.kqsrllsiedkaksqiteledlidevasgdvalGayhlslvlfaedkekLdkavseatkllnakGiv 181
                     ++++++l+++++f+k++kqk+++++++ +++++ si+++a++++ ++e++i+ev+sg+va+G+y++++vl++ed+e+L+++++ ++k++n+ +++
      EHT97627.1 142 MDQHESLKHLDKFRKKWKQKIRGFFDQvFNTNTGSINQDAAAMVGDAEAAIAEVNSGLVAAGYYTSVVVLMDEDRERLAASALLVEKAVNRLAFA 236
                     *********************************************************************************************** PP

  CagE_TrbE_VirB 182 avketigmepaFfsqlPgnirlnvR 206
                     a++eti++ +a++++lPg+   nvR
      EHT97627.1 237 ARIETINTLDAYLGSLPGHGVENVR 261
                     ***********************98 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-06      0.01      23     290 ..     320     567 ..     313     580 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-06
      AAA_10  23 asliiGdlGnGKSvlakllvlyisllggkali.iDpkkerekfketlpeiakkinvvtLd.seeenegvLdPlvllkeekeaeslaedilel..llgvk 117
                 ++++ G++G+GKS    ++  +++   g +++  D+   ++     +++ +k    ++ +   ++ + +  Pl +l+ + + +   e i ++  l+gv+
  EHT97627.1 320 HTFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYaFDKGMSMYPLAAGIRAATKGKSGLHFTvAADDDRLAFCPLQFLETKGDRAWAMEWIDTIlaLNGVN 418
                 667777777777777777777766554444441455555666666666655544444443233555567777777776644444444444433345555 PP

      AAA_10 118 kkesekkaalseaveavlegkqrgllavieelrkedekvareiarhlesvvkkslaklvfsdgsveeaislekkvtvlevedLdLPdkderlerlteek 216
                  +  ++++ + +a+ +   +  r l +    ++  de + + i ++   +v++s+++l+  +++   ++s   + tv+e+e+L       +l++    k
  EHT97627.1 419 TTPAQRNE-IGNAIMSMHASGARTLSEFSVTIQ--DEAIREAIKQY---TVDGSMGHLLDAEEDG-LSLS---DFTVFEIEELM------NLGE----K 497
                 55555553.666666666666666555543333..33333333333...4777777776554442.2233...67777777763......2222....2 PP

      AAA_10 217 llsvavlfviaafarefassdkkefkvvifDEawiftssaeGkkllkelvRiGRsynaavylvtqsadDvlkee 290
                  +   +l++   + r +    k +  v+i+DEaw +   +  ++ ++e ++  R+ n  v+++tqs +D+ +++
  EHT97627.1 498 FALPVLLYLFRRIERAL----KGQPSVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSG 567
                 33333455554444444....777889******************************************98876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   5.7e+03      42      80 ..     140     187 ..     126     231 .. 0.59
   2 !   15.4   0.0   4.4e-06      0.02       4      41 ..     311     348 ..     309     428 .. 0.87
   3 ?    1.4   0.0     0.093   4.2e+02     119     135 ..     510     526 ..     508     527 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
                 EEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH......H CS
                 xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
    ABC_tran  42 illdgkdlke...qeleslrkeigvlpqepqlfpeltvren......e 80 
                 i +d++++ +   + +++++++i+ ++ + +  ++ ++ +       +
  EHT97627.1 140 IFMDQHESLKhldKFRKKWKQKIRGFFDQVFNTNTGSINQDaaamvgD 187
                 555544433336666777777777776663333333333333533331 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.4e-06
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGe 41 
                 ++l+++    + ++G++GaGKSt l ++a +l+  +G 
  EHT97627.1 311 LNLHVRDLGHTFMFGPTGAGKSTHLGIIAAQLRRYAGM 348
                 5677777778999*****************99988875 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.093
                 HHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran 119 larallkkpkllllDEp 135
                 + ral  +p++++lDE+
  EHT97627.1 510 IERALKGQPSVIILDEA 526
                 679999**********8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00092       4.1       6      30 ..     319     343 ..     315     390 .. 0.84
   2 !    8.8   0.0   0.00042       1.9      66     133 ..     494     560 ..     452     563 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00092
      AAA_22   6 gilvvtGesGtGKTtllrrlleqld 30 
                 g+++ +G++G+GK+t l  ++ ql 
  EHT97627.1 319 GHTFMFGPTGAGKSTHLGIIAAQLR 343
                 78899**********9888877775 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00042
      AAA_22  66 lelkaerlsseellealeqalraravielliiDEaqhlr.seealeeLrsllnlsrkgvqliLvGtpel 133
                 l+ k +   +  l++++e+al+ +    ++i+DEa  +  +++   ++r++l++ rk   l+L+ t++l
  EHT97627.1 494 LGEKFALPVLLYLFRRIERALKGQPS--VIILDEAWLMLgHPAFRAKIREWLKVLRKANCLVLMATQSL 560
                 54455455556688**********99..*******9955545555555666665555666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4690.21
//
Query:       EHT97628.1  [L=54]
Description: hypothetical protein CKS_5525 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-05   23.5   0.1    4.6e-05   23.5   0.1    1.0  1  RelE      RelE toxin of RelE / RelB toxin-antitoxin system


Domain annotation for each model (and alignments):
>> RelE  RelE toxin of RelE / RelB toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.6e-09   4.6e-05      76     120 .]       6      50 ..       1      50 [. 0.95

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.6e-09
        RelE  76 gfaKsdkaniskkelkalkklakellalseeqleklikkgelvev 120
                 g +K++ ++++++e +a+ ++ak+++++s ++++kl++++el+ev
  EHT97628.1   6 GLSKKKGKELEDDEIDAYCNIAKDFISMSPATIKKLLSDKELIEV 50 
                 789****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 403.42
//
Query:       EHT97629.1  [L=105]
Description: hypothetical protein CKS_5526 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-08   33.3   0.1    6.6e-08   32.5   0.1    1.4  1  HTH_3           Helix-turn-helix
      1e-05   25.7   0.1    2.5e-05   24.5   0.0    1.6  2  HTH_31          Helix-turn-helix domain
    5.7e-05   23.2   0.0    6.6e-05   23.0   0.0    1.1  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
    0.00025   21.0   0.2    0.00048   20.1   0.2    1.5  1  HTH_19          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.4   0.5       0.07   13.0   0.1    2.0  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
       0.17   12.0   0.1       0.34   11.0   0.0    1.6  2  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   2.2e-11   6.6e-08       1      42 [.      49      90 ..      49      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.2e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlk 42
                +ke R   ++sq+ LA  +G+s+ ++s++E++e++P+   l 
  EHT97629.1 49 IKEVRTRYNMSQAALAITTGMSVESVSKWERNESKPNKAALR 90
                8***********************************988776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   5.1e+03      41      55 ..      20      34 ..      17      37 .. 0.66
   2 !   24.5   0.0   8.4e-09   2.5e-05       3      48 ..      46      90 ..      45      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
      HTH_31 41 rpspavlealaralg 55
                +++ ++++a+  a+ 
  EHT97629.1 20 VVKDETVAAIDAAVA 34
                466677777776655 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 8.4e-09
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavle 48
                G + ++ R+r ++sq+++A  +g+s+  +s++E+ +   p  a+l+
  EHT97629.1 46 GSQIKEVRTRYNMSQAALAITTGMSVESVSKWERNES-KPNKAALR 90
                788999*******************************.69999987 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.2e-08   6.6e-05      60     122 ..      34      97 ..       8     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.2e-08
  MqsA_antitoxin  60 frkkvnaelv.dpafiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalvkllklldr 122
                       +++ a  +  +++i++vr + +++q+ +a   G  v++ s++e+ +++p+ a +++++++d 
      EHT97629.1  34 AARNIPAIRImTGSQIKEVRTRYNMSQAALAITTGMSVESVSKWERNESKPNKAALRIINIIDA 97 
                     34667666554899***********************************************995 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   1.6e-07   0.00048       2      41 ..      47      85 ..      46      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvps 41
                  +ke+R  ++++q++la ++g+s  + s++E +++ +p+
  EHT97629.1 47 SQIKEVRTRYNMSQAALAITTGMSVESVSKWERNES-KPN 85
                569*******************************88.776 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.14   4.2e+02      33      52 ..      31      50 ..      16      58 .. 0.72
   2 ?   13.0   0.1   2.4e-05      0.07      10      46 ..      59      97 ..      55     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
  YdaS_antitoxin 33 kqvpaervpeIekatnGeVt 52
                      v a+ +p+I  +t+ +++
      EHT97629.1 31 AAVAARNIPAIRIMTGSQIK 50
                    45788888888888887775 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.4e-05
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkq..vpaervpeIeka 46
                    +q+aLA   g+s + Vs+W + +++    a r+++I  a
      EHT97629.1 59 SQAALAITTGMSVESVSKWERNESKpnKAALRIINIIDA 97
                    8******************76444445666677777665 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7     5e+03       3      15 ..       2      14 ..       1      24 [. 0.67
   2 ?   11.0   0.0   0.00011      0.34       9      46 ..      55      91 ..      48      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
                   HHHHHHHHT-SSC CS
  Phage_CI_repr  3 leRlmsaygvkmq 15
                   +eRl+ + g+ ++
     EHT97629.1  2 TERLKHIKGMAER 14
                   5788777777665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
                   HHT-SSCHHHHCCTT--HHHHHHHHHSSS--HHHHHHH CS
  Phage_CI_repr  9 aygvkmqkeLAdlLgiakssvstwvrRdffPgdvvvtc 46
                   +y++++  +LA   g++  svs w r ++ P +  +++
     EHT97629.1 55 RYNMSQA-ALAITTGMSVESVSKWERNESKPNKAALRI 91
                   6777665.9**********************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 824.29
//
Query:       EHT97630.1  [L=82]
Description: hypothetical protein CKS_5527 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 592.35
//
Query:       EHT97631.1  [L=289]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-26   93.6   0.6    2.5e-26   92.5   0.6    1.6  1  Resolvase  Resolvase, N terminal domain
     0.0045   16.7   0.1      0.012   15.4   0.1    1.7  1  HTH_23     Homeodomain-like domain
     0.0067   16.5   0.1      0.019   15.0   0.0    1.8  2  HTH_7      Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
       0.16   12.0   0.2       0.44   10.5   0.2    1.7  2  HTH_36     Helix-turn-helix domain
        1.7    8.5   4.5       0.25   11.1   0.3    1.9  2  HTH_38     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.6   7.1e-30   2.5e-26       2     146 .]       6     160 ..       5     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 7.1e-30
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvs 99 
                  +Y+R St+eqd   +r +++l ++a e+++ i + + ++  SGa+leRp+l rll++ r+  gdvl++e++dRL+R    ++ +l   +r++gv +v 
  EHT97631.1   6 RAYLRASTSEQD--AQRARDMLDRFAHEHNVIICNYYAEN-ESGARLERPELFRLLNDSRP--GDVLLIEDVDRLSRLkGDEWEKLKAIIRQRGVWVVA 99 
                 58**********..***************88899999999.********************..***************9999***************** PP

                 SS..............SS-.---H.HHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 100 ldeg............idt.stpm.grlllqilaalaeferelirertkeglaaakakGkk 146
                 ++ +            +d  + ++ + +ll++laa+a+ + e++re +++g+ +aka+Gk+
  EHT97631.1 100 VNVPttwqhlspkaneFDSrMFAAiNDMLLDMLAAIARRDYEQRREGQQQGITKAKAAGKY 160
                 **75567666544443222333334666*******************************96 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.4e-06     0.012      12      39 ..     175     202 ..     169     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.4e-06
      HTH_23  12 lllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +ll+ G s+++I +  g+sr+T++  +k
  EHT97631.1 175 RLLLSGSSWTQIQKTIGCSRSTISSAIK 202
                 46667******************98776 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.7   1.3e+04       7      19 ..      14      26 ..      12      26 .. 0.78
   2 !   15.0   0.0   5.4e-06     0.019       5      38 ..     164     197 ..     161     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
                -HHHHGGGGSSTT CS
       HTH_7  7 skndinrvvkLle 19
                s+ d +r++ +l+
  EHT97631.1 14 SEQDAQRARDMLD 26
                5668999999985 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.4e-06
                 SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   5 klskndinrvvkLleeGisiskIAkevnisRsTv 38 
                  ++k +++ + +Ll +G+s ++I k  ++sRsT+
  EHT97631.1 164 QVNKPRYDAINRLLLSGSSWTQIQKTIGCSRSTI 197
                 5677799**************************7 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         3   1.1e+04      38      49 ..      14      25 ..      11      27 .. 0.82
   2 ?   10.5   0.2   0.00012      0.44      30      49 ..     185     204 ..     181     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3
      HTH_36 38 sknTvsraikeL 49
                s++ ++ra ++L
  EHT97631.1 14 SEQDAQRARDML 25
                778899999998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00012
      HTH_36  30 tlakrlglsknTvsraikeL 49 
                  ++k  g+s++T+s+aik  
  EHT97631.1 185 QIQKTIGCSRSTISSAIKYA 204
                 699999***********965 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4       2.5   9.1e+03      23      29 ..     132     138 ..     132     138 .. 0.83
   2 ?   11.1   0.3     7e-05      0.25      13      38 ..     173     198 ..     171     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
      HTH_38  23 lreIArr 29 
                 l++IArr
  EHT97631.1 132 LAAIARR 138
                 589**97 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7e-05
      HTH_38  13 IerllaeGlslreIArrLgrspsTIs 38 
                 I rll  G s  +I + +g+s+sTIs
  EHT97631.1 173 INRLLLSGSSWTQIQKTIGCSRSTIS 198
                 8899999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2202.20
//
Query:       EHT97632.1  [L=33]
Description: hypothetical protein CKS_5529 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-18   65.3   1.0    2.8e-18   65.2   1.0    1.0  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.035   13.5   0.0    1.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.0   4.7e-22   2.8e-18      17      46 .]       1      30 [.       1      30 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.7e-22
  HTH_Tnp_IS1 17 mAfNGaGvraTARtlkvGiNTviRtLKnSr 46
                 mAfNGaGvr+TARtlk+GiNTviR LK+Sr
   EHT97632.1  1 MAFNGAGVRDTARTLKIGINTVIRALKSSR 30
                 9****************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06     0.035      28      49 ..       6      27 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  + v++ Ar l ++ +TV+r+l+
    EHT97632.1  6 AGVRDTARTLKIGINTVIRALK 27
                  5589****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      16      40 ..       4      28 ..       1      33 [] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkr 40
                +G+ vr+ Ar L +  +Tv r lk 
  EHT97632.1  4 NGAGVRDTARTLKIGINTVIRALKS 28
                58899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 248.53
//
Query:       EHT97633.1  [L=71]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-36  123.6   0.7    6.6e-36  123.5   0.7    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.7   3.7e-40   6.6e-36      61     131 .]       1      71 []       1      71 [] 0.99

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 3.7e-40
  DDE_Tnp_IS1  61 iltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  ++tsddwg+y re+ kdkhl++ki+tqriernnltlrtr+krlark+++fs+s+e+hekvig ++e++m++
   EHT97633.1   1 MITSDDWGSYAREVSKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSIEIHEKVIGAFIERHMFY 71 
                  789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 561.19
//
Query:       EHT97634.1  [L=371]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-49  167.7   1.0    3.4e-49  167.4   1.0    1.1  1  Y2_Tnp       Putative transposase
    1.1e-13   51.0   1.9    2.6e-13   49.8   1.9    1.6  1  Zn_Tnp_IS91  Transposase zinc-binding domain


Domain annotation for each model (and alignments):
>> Y2_Tnp  Putative transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   1.0   3.8e-53   3.4e-49       1     178 [.     116     294 ..     116     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 3.8e-53
      Y2_Tnp   1 GavavlhtfgsalnlhpHvHvlvpdGgleedgewkaskksfflpvkalsrlfrgklletlrkavaraklk...rgllerdeefssllkkaskkgfvvha 96 
                 G+++++ht+g++ln+hpHvHv v+ Gg++++g+wk+    + ++++a+++++++++++ l + ++++      +++++++++++sl+  a  + ++v++
  EHT97634.1 116 GIFCAIHTYGRRLNWHPHVHVSVTCGGIDAHGKWKK----ISFRKDAMRTRWMWNIRQLLLSVWHEGVALppsLSHITTESQWRSLVLTAGGDYWHVYM 210
                 99*********************************9....9***********************9998877889************************* PP

      Y2_Tnp  97 kkavekerkvleyLarYisrpaisnkRlvstd.eekvtfrlkdkrrkktktvtlepeefirrllahVppkgfkriRyyGvla.r 178
                 +k++++++++++yL+rY+++p+i+ +Rl++++ +++++fr++d++++++ t tl+++e+++rl +h+p+k f+++Ry+G+la r
  EHT97634.1 211 SKKTAGGKNTVKYLGRYLKKPPIAGSRLAHYAgGATLSFRYHDHNTGEQATETLTQREIVARLKQHIPEKFFRMVRYFGFLAnR 294
                 *******************************96779**********************************************44 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   1.9   2.9e-17   2.6e-13      43      91 .]      30      78 ..      12      78 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 2.9e-17
  Zn_Tnp_IS91 43 eeCghekivyfsCksrhCpsCqkkateewlekqqeellpvpyrhvvfTl 91
                 ++C+h k++ + C+sr+CpsC+kkat+ w+++q ++l ++++ h+vfTl
   EHT97634.1 30 SGCHHVKYITNACHSRACPSCGKKATDLWIAAQLNRLPDCDWIHLVFTL 78
                 67****************************999999999*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2652.45
//
Query:       EHT97635.1  [L=78]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.017   15.2   2.6      0.036   14.2   2.6    1.6  1  HTH_28        Helix-turn-helix domain
      0.032   13.7   0.1      0.037   13.5   0.1    1.0  1  DDE_Tnp_IS66  Transposase IS66 family
      0.074   12.9   4.1       0.28   11.0   3.6    2.2  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.6     6e-06     0.036      14      36 ..      27      54 ..      12      55 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6e-06
      HTH_28 14 svre.....aArelgisrrtvyrWikry 36
                s+re     a r ++++++t+yrW++ry
  EHT97635.1 27 SYRErqemlAERGVNVYHTTIYRWVQRY 54
                6666666444444677***********9 PP

>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.1e-06     0.037       8      54 ..      13      59 ..       7      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-06
  DDE_Tnp_IS66  8 llAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelle 54
                  ++ +++ + ++++++++  +e+la+ Gv++  +t+ +wv+r a ++e
    EHT97635.1 13 IILWAVRWYCKYGISYRERQEMLAERGVNVYHTTIYRWVQRYAPEME 59
                  66678889999******************************987766 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.6   4.8e-05      0.28      28      42 ..      41      55 ..      10      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.8e-05
      HTH_23 28 gvsrrTvyrwlkryr 42
                +v + T+yrw++ry+
  EHT97635.1 41 NVYHTTIYRWVQRYA 55
                78899*********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 578.83
//
Query:       EHT97636.1  [L=1856]
Description: hypothetical protein CKS_5533 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-10   40.8   0.1    8.6e-10   39.0   0.1    1.9  1  Tox-PLDMTX  Dermonecrotoxin of the Papain-like fold
  ------ inclusion threshold ------
        2.6    8.4   4.6        4.6    7.7   0.0    3.2  3  DUF1805     Domain of unknown function (DUF1805)


Domain annotation for each model (and alignments):
>> Tox-PLDMTX  Dermonecrotoxin of the Papain-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   9.6e-14   8.6e-10       2     109 ..    1533    1639 ..    1532    1656 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 9.6e-14
                  -TT-HHHHHHHHHHHHHHTT-EEEEEEEEEEESSTT-SS-EEEEEEEEEETTEEEEEETTGGGGTTT-TT--.S-EEEEHHHHHHHHHTT-SS-..E CS
  Tox-PLDMTX    2 PadrCedvlkevvdslkakgykdvrlrqlliWekaadslPeNHfvvlakkndeeyvlDvsahqfsklkenls.seiidteeeWvkkyqaalktk..L 95  
                  P +rC d++ e+   l+++gyk   ++ ll+ + ++     NH v+ ++k +e++++D+++ qf++    l+ +++i  ++ W+k+++   +     
  EHT97636.1 1533 PENRCYDATVEAFCVLRDAGYKPKVIGVLLLSNSPNKP-NINHNVIYVEKGGEQMIVDITIRQFNE---RLNeEHVILKKDVWMKTFLGFDEVNrvN 1625
                  899******************87777777787877766.58************************4...44416799**********9765543247 PP

                  EEEEEESSHHHHHH CS
  Tox-PLDMTX   96 vkikdfkndslaen 109 
                  v +k ++n++la+ 
  EHT97636.1 1626 VFYKTYDNPNLANK 1639
                  89999999999875 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.7     0.099   8.9e+02       7      47 ..     179     212 ..     176     213 .. 0.83
   2 ?    7.7   0.0   0.00051       4.6      24      47 ..     525     549 ..     515     550 .. 0.86
   3 ?   -2.3   0.1      0.66   5.9e+03       5      20 ..    1739    1754 ..    1738    1756 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.099
                 HHHHHHTT--EEE-....-S--SHHHHHHSB-SEE-HHHHH CS
     DUF1805   7 vealeklgdlaarvivagsGVrtledllaapvesvteaAee 47 
                 +eal+  g++++rv       ++ +++ +++++++ e+A++
  EHT97636.1 179 LEALDAAGMVKERV-------AKADEVVNKQLYALAEEARK 212
                 57777777888777.......999********999999987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00051
                 ..-S--SHHHHHHSB-SEE-HHHHH CS
     DUF1805  24 g.sGVrtledllaapvesvteaAee 47 
                 + +GV+++++++++ + + ++ A+e
  EHT97636.1 525 EwKGVKQFDEMMTGAISEFSSMAAE 549
                 358*****************99987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.66
                  --HHHHHHTT--EEE- CS
     DUF1805    5 Ldvealeklgdlaarv 20  
                  L+ ++lek++dl+  v
  EHT97636.1 1739 LNYDLLEKFNDLKSDV 1754
                  899********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.32s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 11393.90
//
Query:       EHT97637.1  [L=71]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-36  123.6   0.7    6.6e-36  123.5   0.7    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.7   3.7e-40   6.6e-36      61     131 .]       1      71 []       1      71 [] 0.99

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 3.7e-40
  DDE_Tnp_IS1  61 iltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  ++tsddwg+y re+ kdkhl++ki+tqriernnltlrtr+krlark+++fs+s+e+hekvig ++e++m++
   EHT97637.1   1 MITSDDWGSYAREVSKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSIEIHEKVIGAFIERHMFY 71 
                  789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 512.89
//
Query:       EHT97638.1  [L=33]
Description: hypothetical protein CKS_5535 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-18   65.3   1.0    2.8e-18   65.2   1.0    1.0  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.035   13.5   0.0    1.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.0   4.7e-22   2.8e-18      17      46 .]       1      30 [.       1      30 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.7e-22
  HTH_Tnp_IS1 17 mAfNGaGvraTARtlkvGiNTviRtLKnSr 46
                 mAfNGaGvr+TARtlk+GiNTviR LK+Sr
   EHT97638.1  1 MAFNGAGVRDTARTLKIGINTVIRALKSSR 30
                 9****************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06     0.035      28      49 ..       6      27 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  + v++ Ar l ++ +TV+r+l+
    EHT97638.1  6 AGVRDTARTLKIGINTVIRALK 27
                  5589****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      16      40 ..       4      28 ..       1      33 [] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkr 40
                +G+ vr+ Ar L +  +Tv r lk 
  EHT97638.1  4 NGAGVRDTARTLKIGINTVIRALKS 28
                58899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 252.68
//
Query:       EHT97639.1  [L=290]
Description: hypothetical protein CKS_5536 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-07   31.3   0.0    2.8e-07   30.5   0.0    1.4  1  Mrr_cat   Restriction endonuclease


Domain annotation for each model (and alignments):
>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-11   2.8e-07       6     114 ..     148     253 ..     145     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.6e-11
                 TTCHHHHHHHHHHHHSSSEEE---B-TTSSB--EEEETTEEEEEEEEEEE--TS-B-HHHHHHHHHHCTTS...SEEEEEESS-B-HHHHHHHHTT--E CS
     Mrr_cat   6 pkeFeklvaellealGykeveltgrsgDggiDliakkdplgserilvqaKryknkvgvkeVqeligalkkr.gadkgifvttsdftkaAreeaeelnki 103
                 +++Fe ++ el+ a   +  + + r + ++iD+ +  ++   +++lv+aK++++k+g  ++++++g l+++    +g+f+++++ft++  ++  +++k+
  EHT97639.1 148 GHSFELWLNELFTAFYLS-PKGAFRLKGEQIDGSFLLNN---DTYLVEAKWHSAKTGNADLHAFHGKLDQKiSWARGVFISWAGFTRSGLDAWGRGKKV 242
                 566777777777776555.34444455688888876644...89*************************97579*******************999*** PP

                 EEE-HHHHHHH CS
     Mrr_cat 104 eLldgdeLael 114
                 + ++g++L+ +
  EHT97639.1 243 ICVSGYDLVLM 253
                 *******9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2239.52
//
Query:       EHT97640.1  [L=68]
Description: putative chaperonin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   13.5   0.1      0.079   13.3   0.1    1.1  1  Bac_RepA_C  Replication initiator protein A C-terminal domain
      0.084   13.3   0.0      0.085   13.3   0.0    1.1  1  EF-hand_12  EF-hand fold domain


Domain annotation for each model (and alignments):
>> Bac_RepA_C  Replication initiator protein A C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   8.8e-06     0.079      48      90 ..      22      63 ..       5      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.8e-06
  Bac_RepA_C 48 eeelqelitktLrrffnslrisknkkvknvenYlmrtlknlFe 90
                + +  + i +t  ++ + lr + nk+  +  nY+m++l + +e
  EHT97640.1 22 RTKTLKAIPETFFAAHKTLR-DTNKTNLDFSNYIMEALREKLE 63
                5556677888999999****.*****************98775 PP

>> EF-hand_12  EF-hand fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.4e-06     0.085      36      75 ..       5      44 ..       1      61 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.4e-06
  EF-hand_12 36 hllkatkqdpikpkrklssfefeyiqkkffgnkssvskke 75
                 ll++++q+p   +r++ +  ++ i ++ff+ ++++  ++
  EHT97640.1  5 ALLQVAEQQPAATTRAVRTKTLKAIPETFFAAHKTLRDTN 44
                6899***************************999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 500.43
//
Query:       EHT97641.1  [L=140]
Description: hypothetical protein CKS_5538 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00031   20.1   1.8     0.0012   18.2   0.4    2.0  2  MipZ      ATPase MipZ


Domain annotation for each model (and alignments):
>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.4   6.6e-08    0.0012     103     150 ..       1      48 [.       1      61 [. 0.87
   2 !    1.6   0.1    0.0075   1.3e+02     221     256 ..     102     137 ..      63     140 .] 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.6e-08
                 EEEE--SS--HHHHHHHHT-SEEEEEEESSHHHHCCCEEE-SSS--EE CS
        MipZ 103 ividtPGsdsalsrlahsladtlvtPlndsfvdfdllgkvdpetlkvk 150
                 +vid+ G d  + r+a ++ad ++ P nd++ +   l+k d    ++ 
  EHT97641.1   1 MVIDCGGFDADINRVAVAVADVVIVPANDTVTEQIGLAKFDKVLAEIS 48 
                 59***************************9988877888777766665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.0075
                 TTGGGT--GGGSSSS--S---CHHHHHHHHHHHHHH CS
        MipZ 221 elfpsGltlldlkelgleelnlshvaarqelrdLla 256
                 + + +G+ + ++k+   + ++ + va  +elr+L++
  EHT97641.1 102 QSLRQGMGITEIKHGRASAAGKEVVALVKELRKLVE 137
                 556788999999888877888888888999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1099.64
//
Query:       EHT97642.1  [L=64]
Description: hypothetical protein CKS_5539 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 470.23
//
Query:       EHT97643.1  [L=287]
Description: replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-26   90.8   0.1    1.2e-25   90.3   0.1    1.3  1  IncFII_repA  IncFII RepA protein family


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.1   6.9e-30   1.2e-25       5     209 ..      13     209 ..       9     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 6.9e-30
  IncFII_repA   5 yvknpsPlftpPkeekkrPafikyalkaakekdvarsellyilklkdvktglilkrerrlnehraralralveallyhlniasglveasveqlsDeCG 102
                   vknp+P ftp + +k  P f + ++ +a+    +r +    +    +   ++  r+r     r ra++al++ l  h++  +++v+ s+ +l+ eCG
   EHT97643.1  13 QVKNPNPEFTPREGKKTLP-FCRKLMAKAEGF-TSRFDFSMHV----AFARSLGVRHRMPPLLRRRAIDALLQGLCFHYDPLANRVQRSITNLAIECG 104
                  599******9666555555.888888888665.4666654333....3455566677777889*********************************** PP

  IncFII_repA 103 LstvskaGnksitrasrlitefleplGlvkCekvWDkilesyiPkiitlteLffvLidvskeklksakkqqlgWinkkLrekGekpitlvearrrake 200
                  L+t sk Gn sitra+r++ +f+ +lGl++ +  +D  +++ iP  it t+ +f  +dvs   +  a++ +++W+n++  ++ +  + + e   +a  
   EHT97643.1 105 LATESKNGNLSITRATRAL-KFMAELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVVAARRSRVEWENQQREKQRLPRLDMDELIAKAW- 200
                  ******************9.58********************************************************9998888888877665553. PP

  IncFII_repA 201 khikkaley 209
                  + +++ +  
   EHT97643.1 201 RFVRERFRS 209
                  233443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2134.02
//
Query:       EHT97644.1  [L=50]
Description: hypothetical protein CKS_5541 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-14   51.9   0.0    5.8e-14   51.8   0.0    1.0  1  RepB-RCR_reg  Replication regulatory protein RepB
    1.5e-06   27.9   0.1    1.9e-06   27.6   0.1    1.1  1  RHH_5         CopG-like RHH_1 or ribbon-helix-helix domain, R
    6.6e-05   22.7   0.0    8.3e-05   22.4   0.0    1.2  1  RHH_1         Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.12   12.6   0.0    1.0  1  CUTL          CUT1-like DNA-binding domain of SATB


Domain annotation for each model (and alignments):
>> RepB-RCR_reg  Replication regulatory protein RepB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.3e-17   5.8e-14      33      75 ..       2      44 ..       1      48 [. 0.95

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.3e-17
  RepB-RCR_reg 33 srkklthkeikvfiknelkdslvqlCeeeGitqaqlieklikk 75
                   r+k thkeikv++   lk+ l++lCe eG+ qa++i +li +
    EHT97644.1  2 ERRKETHKEIKVYVPTVLKERLQNLCEAEGVSQAEMISRLIAD 44
                  599*************************************986 PP

>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   4.3e-10   1.9e-06       4      37 ..      11      44 ..       9      45 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.3e-10
       RHH_5  4 vnvtLPeelleeLeewAdeegRsvSnlaafLvek 37
                + v++P+ l+e+L+ ++++eg+s + +++ L+ +
  EHT97644.1 11 IKVYVPTVLKERLQNLCEAEGVSQAEMISRLIAD 44
                89**************************999976 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.8e-08   8.3e-05       2      34 ..      11      43 ..      10      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.8e-08
                EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHH CS
       RHH_1  2 vsirldeellerLdelarrrgrSrSelIReAlr 34
                + ++++  l+erL+ l++++g+S+ e+I ++++
  EHT97644.1 11 IKVYVPTVLKERLQNLCEAEGVSQAEMISRLIA 43
                67999999********************88887 PP

>> CUTL  CUT1-like DNA-binding domain of SATB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05      0.12       8      45 ..       5      42 ..       1      45 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
        CUTL  8 kwssttvrkavkellkemlqstlakecplvqSmiSsiv 45
                k++++ ++  v  +lke lq++   e  +   miS ++
  EHT97644.1  5 KETHKEIKVYVPTVLKERLQNLCEAEGVSQAEMISRLI 42
                899*******************9999999999**9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 378.47
//
Query:       EHT97645.1  [L=149]
Description: endonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-25   89.0   0.2    2.7e-25   88.8   0.2    1.0  1  PLDc_2       PLD-like domain
    3.3e-07   30.1   0.3    3.2e-05   23.6   0.3    2.0  1  FAM83        FAM83 A-H
  ------ inclusion threshold ------
      0.031   13.7   0.1      0.066   12.7   0.0    1.5  2  PP_kinase_C  Polyphosphate kinase C-terminal domain 2
      0.097   12.2   0.2        5.7    6.4   0.0    2.0  2  DUF1189      Protein of unknown function (DUF1189)


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.2   5.9e-29   2.7e-25       2     133 .]      14     139 ..      13     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 5.9e-29
      PLDc_2   2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsN 100
                 +++i sA++si++  y+f +d+++++al++a++rgv+++i++d+     +++  +     ++l+ +ag+++r   + + + H+K++++d++tv  GS+N
  EHT97645.1  14 LNTIGSAQQSIRMMAYSF-TDPDVMKALIAAHQRGVDIKIVIDE-----KGNHNRASMAAMNLIVNAGIPLRTNSR-FPIQHDKILIVDNHTVESGSYN 105
                 579***************.************************9.....455667888889999******998554.5688****************** PP

      PLDc_2 101 ltkrgldlnlElnvviedk.elakeleeeFerlw 133
                 ++++g ++n E+ vv+     +a+++ ++ ++ w
  EHT97645.1 106 FSRAGASKNSENVVVMRFMpAIASQYLSHWQSRW 139
                 ***************9966599999999999888 PP

>> FAM83  FAM83 A-H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.3     7e-09   3.2e-05     130     253 ..      13     121 ..       9     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7e-09
       FAM83 130 vrkliqkaqkviavvmdvftDvdilkdlleaaskrkvpvyilLdeknlklflemceklqvnkqhlknlrvRsvkGetyltrsgkkvkGqlkekfllvDg 228
                 v ++i +aq+ i ++ + ftD d++k l+ a  +r+v + i++dek+ +   +m+            ++  +  G    +r+ +++    ++k l+vD 
  EHT97645.1  13 VLNTIGSAQQSIRMMAYSFTDPDVMKALIAA-HQRGVDIKIVIDEKGNHNRASMAA-----------MNLIVNAGIP--LRTNSRFP-IQHDKILIVDN 96 
                 667899*********************9976.5688*********98887777763...........2222233333..44444455.34789999999 PP

       FAM83 229 ekvlsGsYsftWsssrlhrnlvtvl 253
                 ++v sGsY f+   +  ++++v+v+
  EHT97645.1  97 HTVESGSYNFSRAGASKNSENVVVM 121
                 9999999999988888777777776 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05     0.066      29      62 ..      22      55 ..      15      64 .. 0.89
   2 ?   -3.2   0.0       1.1   4.8e+03      69      83 ..     109     123 ..     107     135 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
  PP_kinase_C 29 akiilklNsledkeiidkLyeAsqaGVkiklivr 62
                  +i +   s +d +++++L++A q GV+ik+++ 
   EHT97645.1 22 QSIRMMAYSFTDPDVMKALIAAHQRGVDIKIVID 55
                 5678888899*********************985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
  PP_kinase_C  69 pgvkglsenikvisi 83 
                  +g  + sen+ v++ 
   EHT97645.1 109 AGASKNSENVVVMRF 123
                  567778888888764 PP

>> DUF1189  Protein of unknown function (DUF1189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0062        28     198     221 ..      21      44 ..      13      49 .. 0.86
   2 ?    6.4   0.0    0.0013       5.7      87     135 ..      49     111 ..      45     133 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0062
     DUF1189 198 kqlfkisvyalTlPtilnaileil 221
                 +q +++++y++T P +++a++++ 
  EHT97645.1  21 QQSIRMMAYSFTDPDVMKALIAAH 44 
                 5889*************9999875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0013
     DUF1189  87 gitiifDtsgetdeedlekynn............gililkdkivi..knggttqsysysdled 135
                 +i+i++D++g+ +  +++ +n              + i  dki+i  + + ++ sy++s    
  EHT97645.1  49 DIKIVIDEKGNHNRASMAAMNLivnagiplrtnsRFPIQHDKILIvdNHTVESGSYNFSRAGA 111
                 578*******9999887777777778788888889999*******666666666677766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1110.00
//
Query:       EHT97646.1  [L=201]
Description: hypothetical protein CKS_5543 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-14   52.4   0.0    6.4e-14   52.2   0.0    1.0  1  DUF2913   Protein of unknown function (DUF2913)


Domain annotation for each model (and alignments):
>> DUF2913  Protein of unknown function (DUF2913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   3.6e-18   6.4e-14       5     165 ..      12     171 ..       9     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 3.6e-18
     DUF2913   5 ellelvnaaLaeLeashksgklvktpaaenhfLvkWltkaLKskrfdklvakdLkrwqkqgrskGknaqLkalleriseqykevaeeekeldskleall 103
                 el +l+   L +++ s+k+gk  +t+++   f+++Wl+ a K k f ++va+d+  ++ qg+  G +a L+++ e+i + +    +++  l  ++  ++
  EHT97646.1  12 ELAHLAWCLLVAVKLSQKQGKI-RTDLQIHIFIMQWLAAAQKRKLFPRSVAQDILWLLDQGKRYGFGARLHRKVEYIWRSSTGELAKQSVL-FRFTYFI 108
                 6667777778888888888887.9*****************************************************99998888888777.9****** PP

     DUF2913 104 aeleekew..vvitdeevvdklkldsdgqeslvvcakqleqhfdeegelikpislyvrgdeaef 165
                 ++l+ ++w   +++++e     + +s   + ++  +++l+ +f + gelikp+++ + gd + +
  EHT97646.1 109 ETLKTMGWldFLLSQQEWRS-YHRESATASAVYTPKAELHPAFSDSGELIKPLEIRFTGDISGV 171
                 ********754555555555.78888899999999************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1575.45
//
Query:       EHT97647.1  [L=255]
Description: type IV secretion-like conjugative transfer relaxase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-06   26.1   0.0      4e-05   23.7   0.0    2.0  2  TraI      DNA helicase TraI


Domain annotation for each model (and alignments):
>> TraI  DNA helicase TraI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.2e-09     4e-05      67     117 ..       1      51 [.       1      56 [. 0.92
   2 ?   -0.3   0.0     0.061   1.1e+03       2      27 ..     115     141 ..     114     179 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.2e-09
        TraI  67 vlreqGlkqgdstarviaPtkkyPqphlalPaydknGksaGltlvPltadd 117
                 +l++ Gl++g+s++ +++  +++P+p la+  +d nG  +G+++  ++ad+
  EHT97647.1   1 MLKNYGLAEGESQGLFVPGVRRHPEPGLAFALWDSNGNRSGVVILTINADE 51 
                 599***************************************998887765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.061
        TraI   2 alsrvkdhvqvytddledwvk.alkea 27 
                 ++sr+    qv+ d+l   ++  + e+
  EHT97647.1 115 NISRITGADQVVDDNLTAQLArNVTEK 141
                 789999999999999876654134443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1820.81
//
Query:       EHT97648.1  [L=565]
Description: TraI family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-37  128.4   3.6    2.6e-37  128.4   3.6    2.1  2  AAA_30           AAA domain
    2.3e-10   41.0   0.4    5.3e-10   39.8   0.1    1.7  2  AAA_19           AAA domain
    7.2e-06   26.1   0.1    2.1e-05   24.6   0.1    1.8  1  TraI             DNA helicase TraI
     0.0015   18.3   0.2      0.003   17.3   0.2    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
  ------ inclusion threshold ------
      0.022   14.6   0.0       0.66    9.7   0.0    2.5  3  AAA_11           AAA domain
       0.09   12.5   0.0        0.5   10.1   0.0    2.0  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
        0.1   13.0   0.1        1.6    9.2   0.0    2.3  2  Lipocalin_8      Lipocalin-like domain
       0.12   12.2   0.2         25    4.7   0.0    2.6  2  Helicase_RecD    Helicase


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   3.6   1.2e-40   2.6e-37       2     182 ..      75     262 ..      74     265 .. 0.93
   2 ?    0.5   0.1      0.19   4.3e+02      48      81 ..     281     313 ..     270     338 .. 0.77

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 1.2e-40
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelgieastiakllkrlk.....grarlepg.t 90 
                 l+a+Q+aa + +l+s dr+++++G+AG GKtt  ka+ +a+e+       +v+glApt++a ++++ ++g++a+t+++++ + +     g ++ + g t
  EHT97648.1  75 LTAGQQAATRMVLESADRFTAVQGYAGVGKTTQFKAMLAAMETLPedlrPEVVGLAPTHRAVEEMK-SVGVRAQTLESFIWEDRqarmnG-EKPDYGnT 171
                 789**********************************9999999658989***************9.99***********8777999963.4555566* PP

      AAA_30  91 llivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRqkeseeraaalalregdaeealeala 182
                 l+++DEa+m++++ + +  +a+++ + + i  GD++Ql ++e+G+++r++++ ++ +ta ++e+vRq  +e r+++ a+ eg+ + ale+ +
  EHT97648.1 172 LFLIDEASMIGNRAMSEAYQAIATGSGRAITSGDDAQLRAIEPGQPFRLMQQRSAVDTAIMKEIVRQ-TPELREVVYAMIEGQHALALEKAE 262
                 ************************99*************************999*************.68**************99998865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.19
      AAA_30  48 rviglAptgkaAkvLaeelgieastiakllkrlk 81 
                 +v  ++p +++Ak+L+ ++g++as ++ +    +
  EHT97648.1 281 SVEQVSPDKEQAKALR-DAGMPASVTEAIAADFA 313
                 68889999*******9.66999999988876666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   2.4e-13   5.3e-10       7     141 ..      88     209 ..      79     213 .. 0.83
   2 ?   -2.3   0.0       2.3   5.1e+03      44      62 ..     306     324 ..     285     407 .. 0.69

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.4e-13
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeeel 105
                 +++++  +v + +G GKT+  k+++a ++ l +    e++ +a+t+rA++e++ ++   g++a+T+ ++  + ++d++  + +      e+ +   ++l
  EHT97648.1  88 ESADRFTAVQGYAGVGKTTQFKAMLAAMETLPEDLRPEVVGLAPTHRAVEEMK-SV---GVRAQTLESF--I-WEDRQARMNG------EKPDY-GNTL 172
                 67788999***********************9998899**************9.44...7*******99..5.5665522222......23333.5569 PP

      AAA_19 106 livDEfqdvd.elqyrLlkallgekkklllvGDpdQl 141
                 +++DE++++    + +  +a+++ + + +  GD+ Ql
  EHT97648.1 173 FLIDEASMIGnRAMSEAYQAIATGSGRAITSGDDAQL 209
                 **********9999*******9777889999***998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.3
      AAA_19  44 eillvaftgrAakelrerl 62 
                 e +++ f+grAa+   + l
  EHT97648.1 306 EAIAADFAGRAAEARDNTL 324
                 5555666666665443333 PP

>> TraI  DNA helicase TraI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   9.4e-09   2.1e-05       1      27 [.     530     556 ..     530     560 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 9.4e-09
        TraI   1 valsrvkdhvqvytddledwvkalkea 27 
                 v+lsr k+hvqvytdd+ +w++ l ++
  EHT97648.1 530 VTLSRTKEHVQVYTDDRAGWLAELSKN 556
                 689******************999765 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   1.4e-06     0.003       2      50 ..     493     540 ..     492     542 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRArekli 50 
                 +ya+t + aQG   ++Vi  + ++  ++++  +++  Y+ ++R++e++ 
  EHT97648.1 493 GYAVTAYGAQGASSRFVITLEGTEGGRKRM-ATKESGYVTLSRTKEHVQ 540
                 8**********************9998855.59*************985 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00029      0.66       3      70 ..      76     139 ..      74     151 .. 0.80
   2 ?    1.9   0.0     0.073   1.6e+02     221     257 ..     173     212 ..     158     213 .. 0.81
   3 ?   -2.9   0.0         2   4.5e+03      55      97 ..     321     368 ..     282     381 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00029
      AAA_11   3 ndsqreaiksalsese.itliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDel 70 
                  + q+ a + +l++ + +t +qG  G gKT+   ++l+++ +       ++  p++   ap++ Av e+
  EHT97648.1  76 TAGQQAATRMVLESADrFTAVQGYAGVGKTTQFKAMLAAM-E----TLPEDLRPEVVGLAPTHRAVEEM 139
                 67899999999999889**************999999999.2....33456667777777777777775 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.073
      AAA_11 221 viIDEAaqa...vEpstliPlrlgakkvvLvGDpkQLpat 257
                  +IDEA++       ++  ++  g+ +++  GD  QL+a+
  EHT97648.1 173 FLIDEASMIgnrAMSEAYQAIATGSGRAITSGDDAQLRAI 212
                 57999988622234677888999999***********996 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
      AAA_11  55 priLvCapSNaAvDellerllr.....glldsegekykpkivRvgnee 97 
                  + L  a+ N+   e+   + +     g+ ++e e + ++ vRv ++e
  EHT97648.1 321 DNTLTVAHLNTDRQEINRLIHDnlyraGITKNEQEITVLDPVRVRHNE 368
                 444444444444444444333333335555555666666666666665 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00022       0.5       2     103 ..      95     212 ..      94     242 .. 0.77
   2 ?   -0.2   0.0       0.3   6.7e+02     187     234 .]     497     543 ..     429     543 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts........liltvnrptaelltegk.....pklpnlsvrtvdsflmalvks.tkgkililDEylll.haGyil 80 
                       v+G +G GK+t  +  l             ++   pt  ++ e k      ++  + ++  +++ m+  k+  ++ + ++DE+ +  ++++ +
       EHT97648.1  95 AVQGYAGVGKTTQFKAMLAAMetlpedlrPEVVGLAPTHRAVEEMKsvgvrAQTLESFIWEDRQARMNGEKPdYGNTLFLIDEASMIgNRAMSE 188
                      699************9998777878666644455556666666666888999999999999*******9999777777789**99962566667 PP

  Viral_helicase1  81 l.laalskaklvilfGDplQipfh 103
                      +  a   ++  +i  GD +Q   +
       EHT97648.1 189 AyQAIATGSGRAITSGDDAQLRAI 212
                      754455567788888999887766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
  Viral_helicase1 187 tvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslvilt 234
                      t  ++qG +   V+ +  +e  ++ ++ ++e  +v l+R ++ + ++t
       EHT97648.1 497 TAYGAQGASSRFVITLEGTEGGRKRMA-TKESGYVTLSRTKEHVQVYT 543
                      555666666666655555555555444.59999******999998876 PP

>> Lipocalin_8  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.26   5.8e+02      69     113 ..     318     358 ..     304     364 .. 0.72
   2 ?    9.2   0.0    0.0007       1.6      49     131 ..     401     477 ..     378     479 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.26
  Lipocalin_8  69 eykgdeltlkdpyvndreegdkkvddtveeLepyGinsleetFev 113
                  e+++++lt+ +  ++ r+e +  ++d+   L   Gi+++e++ +v
   EHT97648.1 318 EARDNTLTVAHLNTD-RQEINRLIHDN---LYRAGITKNEQEITV 358
                  345566999888766.56666666666...9999**999988776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0007
  Lipocalin_8  49 lievaekqgngetgktlgrfeykgdeltlkdpyvndreegdkkvddtveeLepyGinsleetFeveklsgskmiLksdkarLk 131
                  l+ ++    + +++k+l  fe++++   +++p++ + +egd        + ++ G +++   ++ve+++g++m+L+s++ +L+
   EHT97648.1 401 LVTLTG---HDGREKILSPFENSTEDAQIYQPRIISVSEGDRMRFTR--SDAERGYTGN-SFWNVEQIDGQSMTLRSQDGQLT 477
                  444444...45899999999999999999999998766666555444..4455677776.679**************998876 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.013        29     117     139 ..      85     112 ..      64     124 .. 0.67
   2 ?    4.7   0.0     0.011        25      91     112 ..     165     191 ..     125     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
  Helicase_RecD 117 vvl.....atTvhGYEGtGrgfslkflk 139
                    +vl      t+v+GY+G G++ ++k + 
     EHT97648.1  85 MVLesadrFTAVQGYAGVGKTTQFKAML 112
                    44455555799*********99988654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
  Helicase_RecD  91 a.....dllvvDEAAaiplpllkklle 112
                    +      l ++DEA++i  + +++  +
     EHT97648.1 165 KpdygnTLFLIDEASMIGNRAMSEAYQ 191
                    345555789*********999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4122.25
//
Query:       EHT97649.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT97649.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97649.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97649.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97649.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97649.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97649.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT97649.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97649.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT97649.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97649.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97649.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT97649.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97649.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT97649.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97649.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT97649.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT97649.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT97649.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97649.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT97649.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97649.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT97649.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97649.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97649.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97649.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97649.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97649.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97649.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97649.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT97649.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT97649.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT97649.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT97649.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT97649.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97649.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97649.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.41
# Mc/sec: 3845.25
//
Query:       EHT97650.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97650.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 994.13
//
Query:       EHT97651.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97651.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97651.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97651.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97651.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 867.62
//
Query:       EHT97652.1  [L=379]
Description: L,D-transpeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   89.5   0.3    4.2e-25   88.3   0.3    1.7  1  Ldt_C     L,D-transpeptidase C-terminal domain
      1e-17   64.9   0.0    1.7e-17   64.2   0.0    1.3  1  YkuD      L,D-transpeptidase catalytic domain
     0.0038   17.3   0.0     0.0076   16.3   0.0    1.5  1  LysM      LysM domain


Domain annotation for each model (and alignments):
>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.3   7.1e-29   4.2e-25       1      67 []     237     305 ..     237     305 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 7.1e-29
       Ldt_C   1 PvKvsvEPdgsryvEvHqPLSrseed..dpqtvpltlskelkkfledaevdkakvkaalerrsGmPvev 67 
                 PvK+svEPdgsr++EvH+PLS++ee+  +++ vp+tl++++ k+l d +v++++v++a+++rsGmPv+v
  EHT97652.1 237 PVKASVEPDGSRWMEVHNPLSTTEEQfnSRELVPITLTQAVGKVLVDGSVNQSQVDKAIQNRSGMPVQV 305
                 9**************************99**************************************98 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.9e-21   1.7e-17       3     144 ..     100     231 ..      98     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.9e-21
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE--.-EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT.......CECCCCEE CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTP.lGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv.......algkvkfv 93 
                  iv++ ae+rl+++ ++ k+v   p+ +G   e ++ TP + t ++++k   ptw++++  + +++   +++           +       ++    ++
  EHT97652.1 100 GIVINSAEMRLYYYPKGSKTVVVLPIGIG---ELGKDTPlNWTTTVQRKKDGPTWTPTKAMHAEYASR-GENL----------PavfpagpDNPMGLYA 184
                 59******9996666666688********...778888845789999999999997666643333322.2222..........1334445567889999 PP

                 E-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEE CS
        YkuD  94 fpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpv 144
                  + g+ ++iHgt+a+       g r ShGC+rl+ +d+k+l++ v+vgt+v
  EHT97652.1 185 LYIGRLYAIHGTNANFGI----GLRVSHGCVRLRADDIKWLFDHVPVGTRV 231
                 999*******88888444....4589***********************98 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0076       9      44 .]      53      88 ..      53      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
                HHHHHHHCTCHHHHHHHHC.TCSSCGG--TTEEEEEE CS
        LysM  9 LwsIAkrygitveklleaN.nlsspdkifpGqkLkiP 44
                L++ A+++++ ++  leaN +++ +  ++pG+kL+iP
  EHT97652.1 53 LEAFAAQFQMGLSNMLEANpGVDVYL-PKPGSKLIIP 88
                56789*******************99.*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2743.05
//
Query:       EHT97653.1  [L=273]
Description: CorA family Mg2+ transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-43  149.8   2.5    1.2e-43  149.5   2.5    1.0  1  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.18   10.5   0.0       0.21   10.3   0.0    1.1  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   2.5   1.4e-47   1.2e-43      23     289 ..       5     266 ..       3     270 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 1.4e-47
        CorA  23 elgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkdeggkpkspgellyrlldeivd 121
                 ++++d++ ++++ + + r+r+ + ++ ll vl++v+l+++++ +++ +l+i+ ++n++++ r +    +++  + l   ++ ++s++ ll+ ll e   
  EHT97653.1   5 HFQVDDDFFDEIHSASPRTRLAEQSNALLAVLNDVTLSQENRSTQNATLWIWCRHNLVVSARYRSSVMIEKMQQGLA--KHNFPSAEALLLYLLGEQEL 101
                 68999999999******************************************************************..589***************** PP

        CorA 122 rlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqd 220
                 +l+ +++ +++ +d +e++l +   k  ++el  +rr l +++r lap  ++l rll+ +   +l+++  + lr   +e++ +l++l +l er++ lq+
  EHT97653.1 102 QLELVVRRISQVVDNIEERLLSPAIKANRSELGHYRRMLLRIQRLLAPEPAALFRLLN-RPPAWLNRDTLRELRAFTEEFSVVLNDLASLMERIRLLQE 199
                 *****************************************************99999.**********9***************************** PP

        CorA 221 tyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfw 289
                 +++++l e+ Nr++++LTv+t++ lP  +++G++GmN++g+P + +++  +f ll+++++++++l  ++
  EHT97653.1 200 EIAARLMEQSNRTLYLLTVITVLALPINIVAGFFGMNVGGIPLASNPH--GFLLLVLIVLAFTLLAGWL 266
                 ************************************************..6665566666666666554 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.3e-05      0.21     344     428 ..     171     263 ..     114     273 .] 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.3e-05
     DUF2207 344 kkskkkakkfkkalkkwksavkk.......kergyfdkkgkkklkklsalglgliilglilillallllvll.lvfllilllillliaiivll 428
                 ++ ++  ++f+  l++++s +++        + +++++ +++ +    +  l+l i +++++++ +++ ++l +++ ++lll+l+++a+ +l+
  EHT97653.1 171 RELRAFTEEFSVVLNDLASLMERirllqeeIAARLMEQSNRTLYLLTVITVLALPINIVAGFFGMNVGGIPLaSNPHGFLLLVLIVLAFTLLA 263
                 444457788888899999999999988888888888888877776666666666666666666665555554744444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2025.51
//
Query:       EHT97654.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97654.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97654.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97654.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97654.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 770.29
//
Query:       EHT97655.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97655.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 860.63
//
Query:       EHT97656.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-98  328.6   2.9    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   8.7    1.9e-10   41.4   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.023   14.5   5.9      0.036   13.8   5.9    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.028   13.6   1.5      0.054   12.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   12.9   6.3      0.048   12.2   6.3    1.3  1  FUSC             Fusaric acid resistance protein family
      0.032   14.5   4.4       0.12   12.8   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.044   13.0   0.5      0.074   12.2   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.096   12.2   2.0       0.12   11.9   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.14   11.9   9.9       0.23   11.2   9.9    1.2  1  ERM              Ezrin/radixin/moesin family
       0.17   11.8   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.19   12.1   3.0       0.49   10.7   3.0    1.7  1  HalX             HalX domain
       0.29   10.8   2.3        1.1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
          1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        4.2    6.9   7.3        9.3    5.7   7.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        6.1    7.5   8.3        8.1    7.1   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4      0.13   1.3e+02     167     217 ..      34      87 ..      22     121 .. 0.45
   2 !  326.1   0.0    2e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeq 217
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+
    EHT97656.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEE 87 
                   45566566667777776666643113332233333333333333333322.1111 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97656.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97656.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97656.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.4e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.4e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97656.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.6e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97656.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.7     2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97656.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.9   3.9e-05     0.036     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97656.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.5   5.7e-05     0.054      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97656.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.3   5.1e-05     0.048     213     294 ..       4      89 ..       1     120 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97656.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   0.00012      0.12      22      55 ..      23      56 ..      12      71 .. 0.82
   2 ?    2.8   0.5      0.16   1.5e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHT97656.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888899************************985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97656.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   7.8e-05     0.074      24      76 ..      37      91 ..      33     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97656.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEV 91
                578***************8777443335566677788888999********9986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00013      0.12     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.3   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97656.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   3344444555555556666666778999999999998888665543889999999****9999************999844.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97656.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.9   0.00024      0.23      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97656.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.1e+03      26      54 ..      16      44 ..       9      62 .. 0.79
   2 ?    3.1   0.0     0.092        87      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.022        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97656.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.092
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97656.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97656.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.0   0.00052      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT97656.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0011       1.1     152     191 ..      17      56 ..       5      65 .. 0.86
   2 ?    1.7   0.1      0.19   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHT97656.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97656.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.5   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97656.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97656.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4   0.00097      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00097
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97656.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0042         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.085        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97656.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.085
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97656.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.3    0.0098       9.3      70     152 ..      13      97 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97656.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666677777888888888888888885542278888999************************98766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0086       8.1      22      53 ..      12      43 ..       8      50 .. 0.87
   2 ?    3.2   0.8      0.15   1.4e+02      34      57 ..      68      91 ..      62     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97656.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677899********************887665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97656.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                     1022  (0.0570026); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 3473.96
//
Query:       EHT97657.1  [L=85]
Description: hypothetical protein CKS_5676 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 645.27
//
Query:       EHT97658.1  [L=116]
Description: hypothetical protein CKS_5677 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-39  132.8   1.0    5.6e-39  132.7   1.0    1.0  1  Holin_2-3       Putative 2/3 transmembrane domain holin
  ------ inclusion threshold ------
      0.012   15.7   0.4       0.74   10.0   0.0    2.5  2  ATPase_gene1    Putative F0F1-ATPase subunit Ca2+/Mg2+ transp
       0.16   11.9   0.5       0.16   11.9   0.5    2.4  2  Transport_MerF  Membrane transport protein MerF


Domain annotation for each model (and alignments):
>> Holin_2-3  Putative 2/3 transmembrane domain holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   1.0   9.4e-43   5.6e-39       1     105 []      16     116 .]      16     116 .] 0.97

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 9.4e-43
   Holin_2-3   1 ltvwlllavvlllvvalvapqqlpvvlYklslltLaavlgYwldRllFpyarPgeyleeareegdlleekaefevakgleevfaaamlrravivaaavl 99 
                 l+ wll++++ll +++lv+pqqlpvv+Yklsl+tLaavlgYwldR+lFp+arPg+yl    +++d l+++ +f+v++gl+ vf+aa++rra+ivaa++l
  EHT97658.1  16 LSGWLLTSLLLLGTIGLVSPQQLPVVVYKLSLITLAAVLGYWLDRSLFPKARPGQYL----KHDDRLMADGRFPVQTGLHLVFSAALIRRALIVAAVCL 110
                 678******************************************************....46799********************************* PP

   Holin_2-3 100 avgLgl 105
                 av+ gl
  EHT97658.1 111 AVATGL 116
                 ***997 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.018   1.1e+02      32      45 ..      17      30 ..      12      31 .. 0.84
   2 ?   10.0   0.0   0.00012      0.74      14      28 ..      47      61 ..      44      69 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.018
  ATPase_gene1 32 spwfliiglllGla 45
                  s w+l+ +lllG +
    EHT97658.1 17 SGWLLTSLLLLGTI 30
                  67**********87 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00012
  ATPase_gene1 14 pillggllGywLDkk 28
                   i l ++lGywLD+ 
    EHT97658.1 47 LITLAAVLGYWLDRS 61
                  577899*******94 PP

>> Transport_MerF  Membrane transport protein MerF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.5     0.092   5.5e+02       6      13 ..      25      32 ..      23      34 .. 0.86
   2 ?   11.9   0.5   2.6e-05      0.16       2      26 ..      39      64 ..      38      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.092
  Transport_MerF  6 illGvvGL 13
                    +llG++GL
      EHT97658.1 25 LLLGTIGL 32
                    79*****9 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.6e-05
  Transport_MerF  2 PvLVillGvvGLsAlvGY.LDYVLlP 26
                    Pv V  l ++ L+A++GY LD  L+P
      EHT97658.1 39 PVVVYKLSLITLAAVLGYwLDRSLFP 64
                    9****************659999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 921.19
//
Query:       EHT97659.1  [L=240]
Description: hypothetical protein CKS_5678 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-14   51.5   0.0      1e-13   51.0   0.0    1.3  1  SLT       Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   5.6e-18     1e-13      21     110 ..      93     188 ..      73     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 5.6e-18
                 HHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT.-SHHHHCSHHHHHHHHHHH...HHHHHHTTTT..HHHHHHHHHHH-HHHHHHTTHSSHH CS
         SLT  21 aqvESgfnpkAvsksgavGLmQimpstakrlglrvk.lsedelldPeknisagaky...Lkslykqyng..slllalaAYNaGegtvkkakkevkk 110
                   +ESg+ p+Avs++ga+GL Q+mp+ta ++   +  l+ +e ++P+ +i+a ++y   L+++++  ng  +  ++l++YN G g v++ k+ + +
  EHT97659.1  93 LHQESGWRPDAVSPVGAQGLAQFMPATADWISQLMPgLNSREPFNPAWAIRALVSYdrwLWQRVSAANGceRMAMTLSGYNGGLGWVQRDKRLASQ 188
                 679***************************98654479****************995556666666666999999*************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1835.33
//
Query:       EHT97660.1  [L=217]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0011   19.3   1.0     0.0017   18.7   1.0    1.3  1  OmpH         Outer membrane protein (OmpH-like)
     0.0055   16.3   1.6      0.011   15.4   0.2    1.9  2  Filament     Intermediate filament protein
  ------ inclusion threshold ------
      0.019   14.7   0.6       0.56    9.9   0.2    2.2  2  SHE3         SWI5-dependent HO expression protein 3
      0.031   14.7   2.3      0.031   14.7   2.3    1.7  2  YlqD         YlqD protein
      0.042   13.2   1.7        0.1   11.9   0.6    1.8  2  DUF2353      Uncharacterized coiled-coil protein (DUF2353)
      0.074   12.9   0.0       0.18   11.7   0.0    1.7  2  HTH_25       Helix-turn-helix domain
      0.084   13.4   6.3       0.05   14.1   3.7    1.8  2  APG6_N       Apg6 coiled-coil region
       0.11   12.9   4.9       0.18   12.1   4.9    1.3  1  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te
       0.13   11.3   0.1       0.22   10.5   0.0    1.5  1  Filo_VP35    Filoviridae VP35
       0.35   10.2   6.5          1    8.7   6.5    1.9  1  DUF4407      Domain of unknown function (DUF4407)
       0.64    9.9   6.8       0.59   10.1   4.6    1.8  2  JAKMIP_CC3   JAKMIP CC3 domain


Domain annotation for each model (and alignments):
>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.0     1e-06    0.0017      25     118 ..      40     131 ..      21     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE.G CS
        OmpH  25 ekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikevakekgydlvldsr 118
                  ++  k   el++  + ++++q++l+++a  +  ++++qe  +   + ++++ ++  +l++++++l+ +i d  +  i+e +k + +  v+  r
  EHT97660.1  40 TRDGDKAVSELQSAFDTYKTEQATLENAALRA-WAKRYQEQVAAGHQAEASYLEQIAQLESQNKQLQGQINDVTQRWIDEKGKSHPIECVFT-R 131
                 45556666777777777777777776444333.45566665555555555444444889999999999999999999999999999999998.3 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.35   5.7e+02     223     258 ..      45      81 ..      34      88 .. 0.65
   2 !   15.4   0.2   6.6e-06     0.011      14      41 ..      88     115 ..      84     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
    Filament 223 rqiqsleieleslkkqkaslea.qlaeleerleaele 258
                 + + +l++  + +k ++a+le+ +l+   +r++++++
  EHT97660.1  45 KAVSELQSAFDTYKTEQATLENaALRAWAKRYQEQVA 81 
                 4566677777777777777765246666666666665 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament  14 AsYidkVraLEqenkeLeakieeleekk 41 
                 AsY++++ +LE +nk+L+ +i++  ++ 
  EHT97660.1  88 ASYLEQIAQLESQNKQLQGQINDVTQRW 115
                 9**********************99985 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.014        24     133     153 ..      45      64 ..      35      70 .. 0.83
   2 ?    9.9   0.2   0.00034      0.56      16      66 ..      63     113 ..      61     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHSSS CS
        SHE3 133 qeieeLkesleklklenekql 153
                 + ++eL+ +++++k+e+  +l
  EHT97660.1  45 KAVSELQSAFDTYKTEQA-TL 64 
                 6799************98.44 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  16 tktnlqLtqqsqeLleklelaqkkeskflenlaslkhENdnLsslLkRKer 66 
                 t +n++L+   +   e+    ++ e+++le++a+l   N +L+  ++  ++
  EHT97660.1  63 TLENAALRAWAKRYQEQVAAGHQAEASYLEQIAQLESQNKQLQGQINDVTQ 113
                 78999999999999999***********************99877665555 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.3   1.9e-05     0.031      20     103 ..      45     128 ..      41     130 .. 0.90
   2 ?   -1.0   0.1       1.3   2.1e+03      33      50 ..     195     212 ..     182     217 .] 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
        YlqD  20 elqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqvesl 103
                 ++ ++lq++ ++ ++e + Le  a r+ ++  ++++++ +++++++ +++++++ + kql+ q+++v +  +++  k + +e +
  EHT97660.1  45 KAVSELQSAFDTYKTEQATLENAALRAWAKRYQEQVAAGHQAEASYLEQIAQLESQNKQLQGQINDVTQRWIDEKGKSHPIECV 128
                 67899*************************9999999******************************99888777777776655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
        YlqD  33 dkelqqLefqakrlikei 50 
                  k+++ ++ q ++l++e 
  EHT97660.1 195 AKQCRTWHSQINQLLDER 212
                 445555555555554443 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   6.3e-05       0.1      32      96 ..      47     120 ..      36     137 .. 0.80
   2 ?    0.1   0.0      0.25     4e+02     131     159 ..     187     215 ..     172     217 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
     DUF2353  32 aeqLqerlsalkkqleeekakaadlkee.........kekekklsqlleesreenkalkleveeLrqklkeaqg 96 
                 + +Lq+ ++++k+++++ +  a ++  +         ++ e+++ + +++   +nk+l+ +++++ q+  + +g
  EHT97660.1  47 VSELQSAFDTYKTEQATLENAALRAWAKryqeqvaagHQAEASYLEQIAQLESQNKQLQGQINDVTQRWIDEKG 120
                 45677777777777777777666665556677777778899999999*********************988766 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.25
     DUF2353 131 lvkqlEklkekiqqlerdlkavldekeel 159
                 +++++ +  ++++ ++++++++lde+e l
  EHT97660.1 187 VLANIIDNAKQCRTWHSQINQLLDEREGL 215
                 55555567789999999999999999876 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.3   8.7e+03      26      51 ..      90      94 ..      77      99 .. 0.60
   2 ?   11.7   0.0   0.00011      0.18      41      61 ..     127     147 ..     117     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.3
                HHHHHHCT--TTSS-HHHHHHHHHHH CS
      HTH_25 26 ylealEeddfdalpepvylrgylrnY 51
                yle+                     +
  EHT97660.1 90 YLEQ---------------------I 94
                3333.....................3 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHTT--HHH CS
      HTH_25  41 pvylrgylrnYArlLgldpee 61 
                  v++rg++r+Y  +Lg d + 
  EHT97660.1 127 CVFTRGFVRQYNAALGYDNAS 147
                 49**************99865 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.7     3e-05      0.05      15      89 ..      44     113 ..      37     116 .. 0.87
   2 ?   -1.4   0.0       1.9   3.1e+03      59      71 ..     201     213 ..     171     217 .] 0.53

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
      APG6_N  15 dkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaalee 89 
                 dk ++++++  d+Y++  ++l++ +          ++ +e++++ +++e++ le++++le+++++l+ ++++ ++
  EHT97660.1  44 DKAVSELQSAFDTYKTEQATLENAALR-----AWAKRYQEQVAAGHQAEASYLEQIAQLESQNKQLQGQINDVTQ 113
                 667788888999999999999988544.....467899********************************99765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
      APG6_N  59 lekeeeelleeLk 71 
                  +++ ++ll e +
  EHT97660.1 201 WHSQINQLLDERE 213
                 2222222222222 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.9   0.00011      0.18       3      74 ..      47     121 ..      45     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
  Uso1_p115_C   3 aseleseaaslkdeneklk.aelqslskalesleqk..eakkaaesqakeleaenkklekeleklraelkeekek 74 
                   sel+s   ++k+e+++l+ a l++ +k+++++  +  +a+++  +q  +le++nk+l+ ++ ++ ++  +ek k
   EHT97660.1  47 VSELQSAFDTYKTEQATLEnAALRAWAKRYQEQVAAghQAEASYLEQIAQLESQNKQLQGQINDVTQRWIDEKGK 121
                  5899******9998777762689*********9999777777888899999********9999999988777765 PP

>> Filo_VP35  Filoviridae VP35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.22     129     174 ..     141     186 ..      78     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Filo_VP35 129 akydllvistGratataaateaylaehGvpppqpalykelavaqki 174
                   yd   + tG + +taaa     a  G+p    a  ++++v+q+ 
  EHT97660.1 141 LGYDNASVGTGHSDTTAAAGTGTRAASGQPEAADAWLRDSGVSQRD 186
                 359***************************************9974 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.5   0.00062         1     121     188 ..      74     173 ..      32     217 .] 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00062
     DUF4407 121 kelkeqlaaa......ltaelaeleaqiaalqaeidaaearldalraeaq.keldgtk....................gtgttgvaGkgpaake..... 187
                 k+++eq+aa       + +++a+le+q+++lq++i+   +r+ +++ +    e+  t+                     + tt+ aG g++a +     
  EHT97660.1  74 KRYQEQVAAGhqaeasYLEQIAQLESQNKQLQGQINDVTQRWIDEKGKSHpIECVFTRgfvrqynaalgydnasvgtgHSDTTAAAGTGTRAASgqpea 172
                 333333333344444499999999999999999999998887655544320333333366777777777777777666444555566666555533333 PP

     DUF4407 188 k 188
                 +
  EHT97660.1 173 A 173
                 2 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.6   0.00036      0.59      99     175 ..      35     111 ..      29     115 .. 0.71
   2 ?   -0.3   0.0      0.55     9e+02      23      58 ..     136     174 ..     116     217 .] 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
  JAKMIP_CC3  99 geldaerel.kareqleselrktkskikdLeeaLaqkGqdskwveekQalikrnqe...LvekikkleeeeskLkqeiqdl 175
                 g+ +a r   ka  +l+s    +k++ + Le+a   +   ++ +e+  a  +        +e+i +le+++++L+ +i+d+
  EHT97660.1  35 GHENATRDGdKAVSELQSAFDTYKTEQATLENAAL-RAWAKRYQEQVAAGHQ---AeasYLEQIAQLESQNKQLQGQINDV 111
                 45566665437888899999999999999998744.3445555555443334...345667***************99997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.55
  JAKMIP_CC3  23 vvetffgyDeesv...Dvetssapslntdrvsispatpd 58 
                 +++   gyD+ sv    ++t+ a+ ++t+ +s  p + d
  EHT97660.1 136 QYNAALGYDNASVgtgHSDTTAAAGTGTRAASGQPEAAD 174
                 556666777776522235555555555555444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1336  (0.0745161); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1524.72
//
Query:       EHT97661.1  [L=110]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   14.0   0.0      0.034   13.8   0.0    1.0  1  Phage_GPO  Phage capsid scaffolding protein (GPO) serine pept
      0.048   13.6   0.1      0.068   13.1   0.1    1.3  1  SLATT_1    SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.8e-06     0.034     182     252 ..      26     100 ..      16     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-06
   Phage_GPO 182 kallskkkksddarfadveeavelvAeevkelsekveall....aleaelaalkkeveklkaeleaLkekLsktd 252
                 k l+sk ++++ arfa++e+++++ A++  el++++ + +     +  + ++  +  +  +a+l+aL +kL+  +
  EHT97661.1  26 KWLFSKAEERQAARFASLEQSLQQSASNWGELEKEFMRFKadlpLNYVRREDYIRGQTVIEAKLDALYNKLEVVQ 100
                 679*******************************99977654442223333333334455667777777777655 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.6e-06     0.068      50     103 ..       8      60 ..       1      68 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-06
     SLATT_1  50 lsv.dlvgvlaavaaallaWlelkqyeelaaaYslaaeeLeiiraaleaeateee 103
                 ++v  ++ ++ ++++ ++ Wl  k  e++aa+++  +++L++  +++ +   e+e
  EHT97661.1   8 WTVvGFLITFMSFVGGMAKWLFSKAEERQAARFASLEQSLQQSASNWGE--LEKE 60 
                 55556677888999********************************994..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 803.88
//
Query:       EHT97662.1  [L=103]
Description: hypothetical protein CKS_5681 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 766.58
//
Query:       EHT97663.1  [L=181]
Description: gp27 family Mu-like phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-53  180.9  10.8    3.3e-53  180.8  10.8    1.0  1  DUF3486     Protein of unknown function (DUF3486)
      0.004   17.7   1.9     0.0095   16.5   0.2    2.3  2  HTH_32      Homeodomain-like domain
  ------ inclusion threshold ------
       0.03   14.3   1.4      0.081   12.9   1.1    1.9  1  HTH_12      Ribonuclease R winged-helix domain
      0.077   12.9   0.0       0.23   11.4   0.0    1.8  1  PDEase_I_N  3'5'-cyclic nucleotide phosphodiesterase N-termin


Domain annotation for each model (and alignments):
>> DUF3486  Protein of unknown function (DUF3486)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8  10.8   7.4e-57   3.3e-53       1     180 []       1     178 [.       1     178 [. 0.98

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 7.4e-57
     DUF3486   1 mgrrSkvdlLPeevreeLdeaLrekgftqdeIyeelnallaerGeykiSkSalnryaqrleevaeklresreiaealveelgdeedddvtealiellqt 99 
                 m+rrS++++LPeevr +L++aL+e+gf++   y el++ll+e+G y iSkSa++ry+q++e+++ ++r+++e+a++l+e + d++d+ ++ea+i+l+qt
  EHT97663.1   1 MARRSTIEKLPEEVRRWLERALTESGFSG---YNELESLLREQG-YVISKSAIHRYGQKIERRYGAIRAATEAARMLTEGAADDQDA-RSEAVIALIQT 94 
                 99***************************...************.******************************************.*********** PP

     DUF3486 100 llfellmaleeeeeeeidpkeakeL....akalaklerasvaskkrraeirkeaaeaaaaaaeevakaaGlsaetvakirekilG 180
                 +lfe +++l+e+ee+e+dpke  +L    ak++a+l+rasv+ kk+++e+r++a++aa + ae++a++ Gls ++v++++++ilG
  EHT97663.1  95 ELFESIVQLQEAEEGEVDPKERVALlskvAKNVATLSRASVNLKKFQSEVRARAQQAASN-AEKIARKGGLSTDAVQALKREILG 178
                 ***********999999999877777********************************99.8899*******************9 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   2.1e-06    0.0095      27      72 ..       6      52 ..       2      52 .. 0.83
   2 ?    0.3   0.1      0.25   1.1e+03      54      54 ..     118     118 ..      68     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.1e-06
      HTH_32 27 r..klsdevrariiallreeprWsprqlaarlaeregvkvShstvyri 72
                   kl++evr+++ + l+e    ++ +l   l +++g+++S+s ++r+
  EHT97663.1  6 TieKLPEEVRRWLERALTESGFSGYNELESLL-REQGYVISKSAIHRY 52
                2458*************5544779********.8889*********95 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.25
      HTH_32  54 a 54 
                 a
  EHT97663.1 118 A 118
                 1 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   1.8e-05     0.081      15      60 ..      29      75 ..      20      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
      HTH_12 15 gakeiaeeLkkrgydigeravRyrLrkleerg.ltrrvgyagreltE 60
                g +e+++ L+++gy i++ a+ +  +k+e+r   +r    a r ltE
  EHT97663.1 29 GYNELESLLREQGYVISKSAIHRYGQKIERRYgAIRAATEAARMLTE 75
                66899****************9999999998549************9 PP

>> PDEase_I_N  3'5'-cyclic nucleotide phosphodiesterase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     5e-05      0.23      14      32 ..       7      25 ..       3      35 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5e-05
  PDEase_I_N 14 sdaVPseVrdWLastFtrq 32
                 ++ P+eVr WL   +t +
  EHT97663.1  7 IEKLPEEVRRWLERALTES 25
                5889*********999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1112  (0.0620224); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1303.79
//
Query:       EHT97664.1  [L=507]
Description: putative portal protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0067   16.1   0.0      0.011   15.4   0.0    1.5  1  Terminase_6  Terminase-like family


Domain annotation for each model (and alignments):
>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.3e-07     0.011       2     138 ..      37     180 ..      36     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.3e-07
                  EEE-SSS-HHHHHHHHHHHHHHSSSS...-EEEEEESSHHHHHHHHH.....................HHHHHHHTS-TTTS--EEEE-SSEEEETTS CS
  Terminase_6   2 ilggrqsGKTfagarellrhalgrgp..rnqvflsasktqareeggq.....................fekgigelakeildiefeesaknlvvlsnG 76 
                  i ++r+ G T+a a + +  a+   p    +v+ +a+  ++++e +q                     +e++  + +k  ++i+f+         ++G
   EHT97664.1  37 IEKSRRTGITWAEASDDVLTAASSAPagGMNVYYIAYNQDMTVEYIQacamwarafnyaaseieegfwEEDEDDKHIKT-YTIKFP---------DSG 124
                  6789999999998888888888888888888888899999999999999988887776666665555333333333333.666666.........9** PP

                  -EEEEES....SHHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---S CS
  Terminase_6  77 aslhflslesetaggiqGaqidliyfDElteipksqelekvtrlratkgtdtktfattpptp 138
                   ++  ls +  + +g qG    +i +DE++++ + +el k++ ++  +g+++++++t   ++
   EHT97664.1 125 FRVVALSSRPSNLRGRQG----IIVIDEAAFHEQLDELLKAALAMLIWGGKVRVIST--HDG 180
                  **9999988889999999....***************************99944433..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3556.77
//
Query:       EHT97665.1  [L=388]
Description: gp29 family Mu-like phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-109  366.5   0.0   2.8e-109  366.2   0.0    1.0  1  DUF935    Protein of unknown function (DUF935)


Domain annotation for each model (and alignments):
>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.2   0.0  1.6e-113  2.8e-109      35     407 ..      27     387 ..      15     388 .] 0.98

  Alignments for each domain:
  == domain 1  score: 366.2 bits;  conditional E-value: 1.6e-113
      DUF935  35 ehpssgLtparlarilreae.....qGd.ilaqleLaedmEekdahlaselstRkravlgldwevepasdsaaekkladavrelledldeledllldll 127
                  ++s+++++  l+++l++++     qG+ i+ ++eL     ++d+ +++++++Rk+av++l+ ++e+    +a +++++++r++l+dld  ++++ +++
  EHT97665.1  27 ASRSRSIDFFGLGMYLPNPDpilksQGRdIRIYREL-----RTDPLVGGCIRRRKAAVKSLERGLER---GHAPARVFSFIRDMLDDLDL-SRIIGEMT 116
                 5789***********************88*******.....**************************...899***************98.******** PP

      DUF935 128 DAigkGfsvlEilWetsggqwvpralewrdprwfqfdredrrelrlrdeteegeelppfkfvvhrhkaksglpirsglaRvlaWpylfKnysvkdwaeF 226
                 DA+++G++++E++W++s ++w + +++ ++p+wfqfd+++  ++r +d++ ege++p +kfvv+r++a++++p++++++++++Wp++fK++++k+w++F
  EHT97665.1 117 DAVLYGYQPCEVMWGRSVKSWGIADIVGKPPEWFQFDNDNLLRFRAKDAGLEGEPVPLNKFVVPRQDATYDNPYGFPDLSMCFWPVTFKKGGMKFWVRF 215
                 *************************************************************************************************** PP

      DUF935 227 lEvYGlPlrlGkYpagAseeeketLlrAvasigsdAaaiiPesmeiefkeaakagssdlfealaewcdkqiSkaiLGqTlTsdadgkgssnAlgkvhne 325
                 +E+YG+P+++Gk+p+g+ + e++ Ll++++++++dA+a+iP++++ie+kea +   sd++++l++ ++++iS+a+LGq++T++a   +s++A+++++ e
  EHT97665.1 216 AEKYGSPWVIGKHPRGTAQGEIDLLLDSMEAMVEDAVAAIPDDSSIEIKEADS---SDIYQNLITLARSEISIALLGQNQTTEA---NSNRASAQAGLE 308
                 **************************************************988...****************************...89********** PP

      DUF935 326 VreDlrdaDakqlaatlnrqlvrplvdlNfgpqerlPrfeidveepeDlkalaealekLvelGlrvpqsevrdklglpepee 407
                 V++D+rdaD + +++++n q +r+ v++Nfg + + P+++ +++ ++D +++a+++ekL+++G+ +++++++++++l++ + 
  EHT97665.1 309 VTDDIRDADSDIVESAVN-QAIRMAVSMNFG-DVASPVWKTWEQGTVD-DTQATRDEKLSRAGVVFTPQYFKREYQLQDGDI 387
                 ******************.************.****************.*****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2608.48
//
Query:       EHT97666.1  [L=69]
Description: hypothetical protein CKS_5685 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-14   52.6   0.0    3.2e-14   52.6   0.0    1.0  1  DUF935    Protein of unknown function (DUF935)


Domain annotation for each model (and alignments):
>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.8e-18   3.2e-14     463     520 .]       7      64 ..       1      64 [. 0.95

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.8e-18
      DUF935 463 eaalepllapvlelleeaesleelrerlaelypdmdaeelaelLaralfvAellGrle 520
                 + +l+p+l+p++++++++ +++el+ +laelyp+m+a++l+e+Lar++fvA+++Grl+
  EHT97666.1   7 NGVLAPVLEPLFNQVKDGVNPSELLGALAELYPQMNADDLQERLARIMFVATVWGRLH 64 
                 6789****************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 521.76
//
Query:       EHT97667.1  [L=237]
Description: F family Mu-like phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-29  102.7   0.0    3.1e-29  102.0   0.0    1.4  1  Phage_Mu_F    Phage Mu protein F like protein
  ------ inclusion threshold ------
       0.17   11.9   0.2       0.31   11.1   0.2    1.3  1  EPF           Epidermal patterning factor proteins
       0.22   10.7   0.2       0.33   10.1   0.2    1.2  1  HEPN_STY4199  STY4199-like HEPN


Domain annotation for each model (and alignments):
>> Phage_Mu_F  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   5.2e-33   3.1e-29       2     111 ..      23     153 ..      22     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 5.2e-33
  Phage_Mu_F   2 kirdavtqaiarGegeeelakelkkr.......................gqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvavkdsrt 77 
                 +ir a++qa+ +G++ + + ++l++                         q s+  rl+ti rt+++ +y+a+r+a+++++++ +++ w+y  ++ds t
  EHT97667.1  23 DIRSALQQALDEGKTDRWFRQQLEPElqrkgwwgprdttdpvtgepvtiQQGSPW-RLATIFRTNMSILYSAGRWAEQMENVDDRPY-WMYTGINDSHT 119
                 79**********************************************8444566.*******************************.*********** PP

  Phage_Mu_F  78 rpeHaaldGkvfkvddpfwqtgappedvnCRCrv 111
                 r +H al+G v ++ddpfwq  +pp+++ CRC v
  EHT97667.1 120 RKSHLALHGLVLRYDDPFWQAFYPPNGWRCRCGV 153
                 ********************************87 PP

>> EPF  Epidermal patterning factor proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   5.3e-05      0.31      35      47 ..     140     152 ..     136     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
         EPF  35 aeyypeaWkCkCg 47 
                 a y p++W+C+Cg
  EHT97667.1 140 AFYPPNGWRCRCG 152
                 4499********8 PP

>> HEPN_STY4199  STY4199-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   5.4e-05      0.33      26      59 ..      23      56 ..       2      58 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.4e-05
  HEPN_STY4199 26 eiLlLLnvkvaegkdPrwfleqldqarlnlGgWa 59
                  +i + L+  ++egk  rwf +ql+   +  G W+
    EHT97667.1 23 DIRSALQQALDEGKTDRWFRQQLEPELQRKGWWG 56
                  3445789999**************9888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1823.35
//
Query:       EHT97668.1  [L=152]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-22   77.6   0.0    9.2e-22   77.5   0.0    1.0  1  Phage_tail_S  Phage virion morphogenesis family
  ------ inclusion threshold ------
      0.051   13.8   0.0        9.1    6.6   0.0    2.2  2  TetR_C_30     Tetracyclin repressor-like, C-terminal domain
       0.15   11.3   0.0       0.21   10.8   0.0    1.2  1  IMPa_N_2      Immunomodulating metalloprotease N-terminal dom


Domain annotation for each model (and alignments):
>> Phage_tail_S  Phage virion morphogenesis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   1.5e-25   9.2e-22       2     147 ..      12     146 ..      11     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 1.5e-25
  Phage_tail_S   2 dlqavedalkrllakladrrplmraigeeLresqeqrfeaqkdPdGspwkplkdktlaakkgkikrggkilrklgrlarslkteatsdsvevGsnki 98 
                   +++ +++ l  l  +++d++p mr+i+ +L+ +++ +f ++  P   +w+p+    +a+      r+g++l+++grl++s++t+ ++ +++vG+n +
    EHT97668.1  12 NDESLRRSLRALDLAATDLEPAMRKIAGTLLAETQFNFLDEGRP---GWTPSL---AAEE-----RDGQTLQDTGRLMGSVSTDHDDRQAAVGTNVV 97 
                   678899999999999*****************************...9***99...4444.....6779**************************** PP

  Phage_tail_S  99 yAaiHQfGgkagrdrvskkgkkvtipaRplL......GlsdedeeeildillahL 147
                   y  iHQfGgk+gr+      ++v++paRp+L      +l++e    ild++ +hL
    EHT97668.1  98 YGPIHQFGGKTGRN------ESVELPARPFLpltgdgELQPEVVVPILDTIVRHL 146
                   ************99......9**********666555555555555666666666 PP

>> TetR_C_30  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0015       9.1      14      53 ..      12      51 ..       6      54 .. 0.89
   2 ?    5.2   0.0    0.0039        23       5      37 ..      58      90 ..      57     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
   TetR_C_30 14 ggeggrafarllarvysepdeelrellaeeydpvarrfia 53
                ++e++r+ +r l +++++ ++ +r+++ +  +++   f++
  EHT97668.1 12 NDESLRRSLRALDLAATDLEPAMRKIAGTLLAETQFNFLD 51
                4999**************************9999888877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0039
   TetR_C_30  5 rPllelaeeggeggrafarllarvysepdeelr 37
                +P l+  e++g+ ++   rl++ v++++d++ +
  EHT97668.1 58 TPSLAAEERDGQTLQDTGRLMGSVSTDHDDRQA 90
                5889999999****************9998755 PP

>> IMPa_N_2  Immunomodulating metalloprotease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.5e-05      0.21      36      61 ..      72      97 ..      51     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.5e-05
                -TTS-EEEEEE-GGG--EEEESS-GG CS
    IMPa_N_2 36 gdkGrvlaalsekqggRalAyGtdil 61
                 d+Gr + ++s  ++ R++A Gt+++
  EHT97668.1 72 QDTGRLMGSVSTDHDDRQAAVGTNVV 97
                69**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1118.03
//
Query:       EHT97669.1  [L=351]
Description: hypothetical protein CKS_5689 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   13.0   2.4       0.14   12.3   2.4    1.3  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus


Domain annotation for each model (and alignments):
>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.4   7.6e-06      0.14      65     119 ..     176     230 ..     143     245 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.6e-06
     UPF0242  65 lekskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeen 119
                 + ks+ +  e++   ++e+ +  ee+++ lq+e+ +Lk e  ++ e+ ++ ++++
  EHT97669.1 176 TGKSEPDFSEHNPNPQQENSTMTEEEIKALQAENTRLKAEATQRAEQEAKNRQDK 230
                 3677777778888888899*********************666665544444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2628.07
//
Query:       EHT97670.1  [L=317]
Description: hypothetical protein CKS_5690 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0015   17.8   0.0     0.0022   17.2   0.0    1.3  1  Phage_cap_E  Phage major capsid protein E


Domain annotation for each model (and alignments):
>> Phage_cap_E  Phage major capsid protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-07    0.0022     150     221 ..     134     204 ..     106     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-07
  Phage_cap_E 150 khkiefdlgtakWd.advradpledlrkwednlakgggstpvralmgkkffdalikhkkvkeaydntqageag 221
                   ++++ ++++++W     + dp++ ++   +++++++g +p+ + mg+++++ l  h+++++a+ +++ + ++
   EHT97670.1 134 AANVKALAAADRWGgG--KGDPIGIIEGGIEAVRNATGLRPNLMTMGASVMSLLKFHPAIQAAIGANERKRIT 204
                  556888999999**55..55*******************************************9999864444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2536.79
//
Query:       EHT97671.1  [L=118]
Description: dihydrolipoamide acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-18   65.6  11.6    5.6e-18   65.3  11.6    1.0  1  DUF2190   Uncharacterized conserved protein (DUF2190)
  ------ inclusion threshold ------
       0.04   14.1   0.4       0.11   12.7   0.4    1.8  2  AbiEi_4   Transcriptional regulator, AbiEi antitoxin


Domain annotation for each model (and alignments):
>> DUF2190  Uncharacterized conserved protein (DUF2190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3  11.6   6.3e-22   5.6e-18       5     100 ..       6     114 ..       3     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 6.3e-22
     DUF2190   5 k.sldvtvaaaaaitagqvvvlgal......kvlGVAatdaaaGetvtvaveGvf.veaaaaiavGdkVywdasgkvl....ttttatgn..vaGvale 89 
                 + +l++tv+a+aa+t++++v  +++       +lGVA++daaaG+  +v+v G++ vea+aa+++G+ V++da+++++    ++  +t +   aG+al+
  EHT97671.1   6 QvILTTTVTASAALTQQRFVGADNApcqagaVALGVAEVDAAAGDVTPVNVLGIVaVEAGAAVSRGQIVQSDANACAVpqipAA-GETPAgiSAGIALD 103
                 5589*******************9444556678****99**************************************7765533.333335566***** PP

     DUF2190  90 aaaaagdtvlv 100
                  a a+gd++++
  EHT97671.1 104 EALAEGDVIRI 114
                 *******8765 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.5   4.5e+03      32      40 ..      67      75 ..      63      76 .. 0.82
   2 ?   12.7   0.4   1.2e-05      0.11      20      45 ..      91     118 .]      67     118 .] 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.5
     AbiEi_4 32 LvrkGwLvr 40
                +v++G +v+
  EHT97671.1 67 AVSRGQIVQ 75
                688999987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.2e-05
     AbiEi_4  20 ea.aGisp.salrrLvrkGwLvrlrrGv 45 
                 e  aGis+  al++++ +G+++r+ rGv
  EHT97671.1  91 ETpAGISAgIALDEALAEGDVIRILRGV 118
                 5669**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 991.83
//
Query:       EHT97672.1  [L=148]
Description: gp36 family Mu-like phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-38  131.0   0.2    2.9e-38  130.8   0.2    1.0  1  DUF1320   Protein of unknown function (DUF1320)


Domain annotation for each model (and alignments):
>> DUF1320  Protein of unknown function (DUF1320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.2   1.6e-42   2.9e-38       1     124 [.       2     131 ..       2     133 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.6e-42
     DUF1320   1 Yatlddlierigedeliqltddee...tageidaavveeaiadAsalIDgyLakRytlPLktvptvlkrlavdiarYrLysr..d.eateevkkrYkda 93 
                 Y+tl+dl e+++e++li+lt++     ++  ++a+vve++i++A +lID++L++RytlPL++vptvl+++a++++rYrLy r  + + +++vk++ k+a
  EHT97672.1   2 YCTLADLLEQVPERTLIELTNESVgfdEQPPVNATVVESCIRYAGELIDAHLRGRYTLPLTEVPTVLRDIAITLTRYRLYVRrpEgDLPDTVKDDNKEA 100
                 *********************9989998899***************************************************76369************ PP

     DUF1320  94 lklLekvakGklsLgladeaeaapeaeearv 124
                  ++Le++++Gkl+Lgl+++++++pe++e r 
  EHT97672.1 101 RRQLEAIRDGKLTLGLQSTQKDVPESGEIRA 131
                 *************************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1109.46
//
Query:       EHT97673.1  [L=154]
Description: hypothetical protein CKS_5693 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-62  209.1   0.0    2.6e-62  208.9   0.0    1.0  1  Gp37      Gp37 protein


Domain annotation for each model (and alignments):
>> Gp37  Gp37 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.0   1.4e-66   2.6e-62       1     143 []      10     152 ..      10     152 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.9 bits;  conditional E-value: 1.4e-66
                 HHHHHHHH-TTEEEEE...-SS-TTT---SSSEEEEEEEEEE----SSSS-EEEEEEEEEEEEEESSHHH...HHHHHHHHHHHHTT---TT-SS--EE CS
        Gp37   1 ivarLrealPdlevelfPedpaeyrlnhpvGavLvsyagskfaepedtdavvqtrtlqleltvllrqlngeeGalavlDalRlalvGfkppdckrklwl 99 
                 +varL+e+lP l ve+fPe+paeyrlnhp+Ga+Lvsyags+f++p+dt+a++q +t+ql +tv++rqlng++Ga++vlD +R++l+G++pp+c+r++wl
  EHT97673.1  10 VVARLKEKLPTLAVEYFPEKPAEYRLNHPKGALLVSYAGSRFDKPNDTSAIIQAQTIQLCVTVVFRQLNGKQGAVDVLDVVRRILGGYTPPNCRRRIWL 108
                 78************************************************************************************************* PP

                 EEEEEEE-GGG-EEEEEEEEEEEEEE---XXXXXXXXXXXXXXX CS
        Gp37 100 vsekflgeeegvwqYaldfatetlqvedaeeedgpllkevnyee 143
                 ++e f+ge +g+wqYaldfate++++ed++  +gpll+evnyee
  EHT97673.1 109 TREVFIGEVKGLWQYALDFATESVFIEDSDLPSGPLLTEVNYEE 152
                 ******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1141.02
//
Query:       EHT97674.1  [L=83]
Description: hypothetical protein CKS_5694 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 640.66
//
Query:       EHT97675.1  [L=475]
Description: major tail sheath protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-32  110.9   0.0    1.4e-31  109.7   0.0    1.7  1  Phage_sheath_1   Phage tail sheath protein subtilisin-like do
      5e-14   52.2   0.0    1.2e-13   50.9   0.0    1.7  2  Phage_sheath_1C  Phage tail sheath C-terminal domain


Domain annotation for each model (and alignments):
>> Phage_sheath_1  Phage tail sheath protein subtilisin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   1.5e-35   1.4e-31       1     166 [.     182     356 ..     182     358 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 1.5e-35
                     CT--HHHHHHHHHHGTTS--SEEE-GGGTCS-HHHHHHHHHHHHHHHHHCH-SSEEEEES-HHHHSSS.HHHHHCTTTTEEEE--EEEETTSSEE CS
  Phage_sheath_1   1 gkvtnedylaaldalegekfnlliapgddaednevatevqafakrsrenegldaiaviappgtttieqaaarakadnegiinvsstyaaldgpei 95 
                     g++t++++l+   +l g+  ++liap+  +++n+v+ e++a a+      +l a+ +i++p +tt +qa+a +  + + ++n+ss+++ l++p++
      EHT97675.1 182 GNRTGMKLLNDSFNLFGYFAKILIAPV-FCTQNSVSVELIAMAE------KLGAVTYIDAPIGTTFAQALAGRGPEGTINFNTSSDRVRLCYPHV 269
                     57899**********************.9999*********999......********************************************* PP

                     EHH..........HHHHHHHHHHHHSTTT--STT....-B-TTEEEESSS....--HHH..HHHHHHTTEB-EEEETTTEEEES--B CS
  Phage_sheath_1  96 tqy..........paaawvAGlcAradveqswtarpsngevkgaldlaie....ltqee..rdllleaGintltvdagdgvrvegdi 166
                     ++y          p++ ++AGl+A++d+ ++ ++++sn+e+ g+++++++    +++ +  ++ll+e+Gi+t+ +++g+g+r++g++
      EHT97675.1 270 KVYdaatnserlePLSQRAAGLRAKVDLDKGYWWSSSNQEILGITGVERQlsamIDDPQseVNLLNEQGITTVFSSYGSGLRLWGNR 356
                     **************************************************99776655577************************98 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.97   8.7e+03      37      51 ..     167     181 ..     155     184 .. 0.73
   2 !   50.9   0.0   1.4e-17   1.2e-13       7     104 .]     368     464 ..     362     464 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.97
                      SHHHHHHHHHHHHHH CS
  Phage_sheath_1C  37 nddgralvksalnay 51 
                      +++++a+++ a+na 
       EHT97675.1 167 TKVTPADIIGAVNAA 181
                      358999999999985 PP

  == domain 2  score: 50.9 bits;  conditional E-value: 1.4e-17
                      GBHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTSB-S--STTSEEEEC.SSSSTTEEEEEEEE-BSSSSS-EEE CS
  Phage_sheath_1C   7 kkievirtldllrddirstfkkkylgkklnnddgralvksalnaylkelqregaienfdnksdlevea.kntdkdrlvvkinvkpvnsmeklyf 99 
                      ++ +v+rt dl+++++r + ++  +++++ ++ + +++++ +nay ++l  +ga+ +f+++ d   ++ ++  +++l+ +++++p +++e+l+f
       EHT97675.1 368 NFENVRRTGDLINESLRYFSQQ--YIDMPITQALIDALTESVNAYGRKLIGDGALLGFSCWFDPARNEeTELAAGHLLLSYKYTPPPPLERLTF 459
                      6789******************..*****************************************99988999********************* PP

                      EEEEE CS
  Phage_sheath_1C 100 tievt 104
                      ++e+t
       EHT97675.1 460 ETEIT 464
                      *9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3392.02
//
Query:       EHT97676.1  [L=173]
Description: putative phage tail core protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-54  184.1   0.0    1.8e-54  183.9   0.0    1.0  1  Phage_tube  Phage tail tube protein FII


Domain annotation for each model (and alignments):
>> Phage_tube  Phage tail tube protein FII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0   9.9e-59   1.8e-54       2     165 ..       7     171 ..       6     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 9.9e-59
  Phage_tube   2 rklknfnvyvdgnsylGrveevtlPkltrkteeyrggGmagevevdlggelealeleiklggldeevlklflakgkavqlrfrgalqredtae...eka 97 
                 ++++n+n+y dg ++lGr+eev+lP+++++++e++++Gm+g+ve+++g+  ++le eik+++++++++  ++++ k+ +l++r+++qr++++    e++
  EHT97676.1   7 NRITNANIYLDGANLLGRAEEVKLPDVSMTMQEHKALGMVGKVELPAGF--DKLEGEIKWNSFYRDAMLSAANPYKSLALQCRSSVQRYSSQGlidEIP 103
                 689**********************************************..***************************************998999*** PP

  Phage_tube  98 vevvvrgrvkeidlGkakagektetkvtlavtyykltvdGkelleiDvlnmiykvnGvDllaevRkal 165
                 +++ ++ ++k+++lG++k++e++e+++++++ty+k+++dG+elle+D+l++i++v+GvD+l ++R ++
  EHT97676.1 104 LVTFLTIMFKKNPLGTFKQHENAEFSSSFTCTYIKQVLDGEELLELDYLANIFRVGGVDQLTDYRINI 171
                 *****************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1326.54
//
Query:       EHT97677.1  [L=97]
Description: hypothetical protein CKS_5697 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-13   49.7   0.0    4.2e-13   49.4   0.0    1.1  1  Phage_gp49_66  Phage protein (N4 Gp49/phage Sf6 gene 66) fami


Domain annotation for each model (and alignments):
>> Phage_gp49_66  Phage protein (N4 Gp49/phage Sf6 gene 66) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   2.3e-17   4.2e-13       1      80 [.       6      88 ..       6      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2.3e-17
  Phage_gp49_66  1 itpeeiealIasedyftaadgvetdkltvcvlvLkNgftvtg.esacvdpenfdaeiGrkia....kenavdkiWeLeGyllrek 80
                   + ++ i++l+as +y+t +     ++lt+ v+ ++ gf v    sa + p  fd+e+Grk+a    ++na + +W+ eGy+l+++
     EHT97677.1  6 VERKTIDDLVASLNYQTHHF--PGTTLTIAVALMPDGFMVSSgFSATAHPGLFDEETGRKVAiakaQHNATEALWQFEGYRLKSR 88
                   56899***********9885..3479**************8769****************972222566779**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 707.28
//
Query:       EHT97678.1  [L=93]
Description: hypothetical protein CKS_5698 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 736.14
//
Query:       EHT97679.1  [L=320]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-20   72.9   0.0    6.1e-20   71.8   0.0    1.5  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   3.4e-24   6.1e-20      31     209 ..      29     245 ..      15     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.4e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT97679.1  29 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegglrt 125
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999888877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT97679.1 126 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 221
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT97679.1 222 ErFGFGLRASYSRSAGRIQVLSLL 245
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2573.31
//
Query:       EHT97680.1  [L=72]
Description: IS1330 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 600.27
//
Query:       EHT97681.1  [L=104]
Description: hypothetical protein CKS_5701 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-20   73.5   0.1    1.4e-20   73.2   0.1    1.1  1  Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41
  ------ inclusion threshold ------
        0.1   13.0   0.1       0.17   12.3   0.1    1.4  1  DIMCO_N      Dinitrogenase iron-molybdenum cofactor, N-termin


Domain annotation for each model (and alignments):
>> Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41 or 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1   1.6e-24   1.4e-20       1      82 [.       8      84 ..       8      85 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.6e-24
  Phage_TAC_7  1 titLkkP.ievdGetyteltLReptvkDlraaqlvkegkpdadllmgaeialiarlsglppedlekLdlaDlarlqervagfl 82
                 t++L++P ++++G+++++++L+++tvkDl++++  k +k+ ad    +   liar +g+ pedl+++dlaD+ +lq+r+++++
   EHT97681.1  8 TFKLSYPfTTAAGTRVEQVELKRLTVKDLKQVR--KISKDPAD----WDEPLIARSTGILPEDLDNMDLADYMELQKRFQQVT 84
                 89*******************************..********....********************************9985 PP

>> DIMCO_N  Dinitrogenase iron-molybdenum cofactor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.9e-05      0.17      29      57 ..      16      45 ..       5      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
     DIMCO_N 29 qerlgeplteekLakltvtdLktala.sad 57
                +++ g ++++ +L++ltv+dLk++ + s d
  EHT97681.1 16 TTAAGTRVEQVELKRLTVKDLKQVRKiSKD 45
                6788999***************97655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 745.83
//
Query:       EHT97682.1  [L=45]
Description: hypothetical protein CKS_5702 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-05   23.6   0.3    3.2e-05   23.4   0.3    1.1  1  Phage_P2_GpE   Phage P2 GpE
     0.0013   17.3   0.4     0.0014   17.1   0.4    1.0  1  Head-tail_con  Bacteriophage head to tail connecting protein


Domain annotation for each model (and alignments):
>> Phage_P2_GpE  Phage P2 GpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.3   3.6e-09   3.2e-05       4      36 ..       7      39 ..       7      40 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.6e-09
  Phage_P2_GpE  4 iAvvFHWspselddmsLtELldWRerArrRsga 36
                  +A +F ++p e d++   +L+ W+e+A ++++ 
    EHT97682.1  7 LARWFRFQPGEIDALDTDDLEMWLEQAEEQIKR 39
                  799***************************985 PP

>> Head-tail_con  Bacteriophage head to tail connecting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   1.6e-07    0.0014      69     104 ..       8      42 ..       7      45 .] 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-07
  Head-tail_con  69 rpWFrlslgkdeeladsaevkawLeeverillaela 104
                    ++WFr+++g + + +d+++++ wLe++e+++ +e+ 
     EHT97682.1   8 ARWFRFQPG-EIDALDTDDLEMWLEQAEEQIKREFG 42 
                    58******9.899999999************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 338.49
//
Query:       EHT97683.1  [L=821]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-13   50.2  28.2    2.7e-13   50.2  28.2    3.2  3  PhageMin_Tail  Phage-related minor tail protein


Domain annotation for each model (and alignments):
>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.16   2.9e+03     148     189 ..      49      84 ..      12     103 .. 0.49
   2 !   50.2  28.2   1.5e-17   2.7e-13      15     180 ..     167     340 ..     148     425 .. 0.77
   3 ?   -3.2   0.4      0.35   6.2e+03     103     126 ..     757     796 ..     752     814 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.16
  PhageMin_Tail 148 eaaealkklGistkdaqgkmksldeiledlsealkkltdaqr 189
                    +a+e   +lG        +m+ l+  l  +s  +++++ +qr
     EHT97683.1  49 RATERYGQLGS------SRMQRLNSELLRVSRTMEQIERQQR 84 
                    33333333453......3344444444455555555544444 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1.5e-17
  PhageMin_Tail  15 atelaealeelasaGvsteeilnllegaaklataggaddleeaaeilstalnafgls.aadaeeaaDvlaaaanngatsvedlaealkevgavaka 109
                    ++ l  ++++l+  G++ +++ +++    k+ata++ad ++++a++  +  +a++++ a+++e+a+ + a +a+ g+++++d+a+al+ ++ +++a
     EHT97683.1 167 QESLLGGVGQLVADGMNPQQAATFAGMLGKAATATKAD-MTDLAKMTYAFSDALKITdAKELEQAFGIAATGAKLGSFELKDMAKALPGMAKAFAA 261
                    5678899*****************************77.******************666************************************ PP

  PhageMin_Tail 110 aGlsfee..taaalallaaag.ikgseAgtalknllsrl..tkeaaealkklGis.t.........kdaqgkmksldeiledlsea 180
                     G+ +++  t  +++l   +g  +++eA t++ n+l+++   +++++ +k+ G++                   s +e++ +++++
     EHT97683.1 262 RGIYGKDaiTQIVASLEVGKGsGSAEEAVTNMSNWLAAMgrGDTTQKYAKA-GVDyQgsmqnyvaqG------FSQYEASLMIANR 340
                    *******8655566666669999****************876677777777.999444444444440......4444444444443 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.35
  PhageMin_Tail 103 vgavakaaG................lsfeetaaalallaa 126
                    +g  a+aaG                l+++etaa ++l  a
     EHT97683.1 757 SGRGAAAAGggtsggiqvsfnpqffLNGKETAAPAGLTGA 796
                    4455555555566667777667777777777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5532.95
//
Query:       EHT97684.1  [L=294]
Description: hypothetical protein CKS_5704 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-32  111.8   0.0    2.1e-32  111.2   0.0    1.3  1  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   1.2e-36   2.1e-32       1     118 [.       6     122 ..       6     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 1.2e-36
  Phage_P2_GpU   1 GdfvFelntlafqelqrstsarwaeherlggrpalqfvGpgeetitlsgvlfpeltggreeleaLramaeagealpLvlGtgevlgkwviesisetq 97 
                   Gd++Fel t ++++++ + ++++aeh+r++g+p lqfvG+++++i++s+v++++++ ++ el++Lr++++a++al+Lv G+g++ g++vi+++++t+
    EHT97684.1   6 GDIEFELIT-YWDGFEATFGVDYAEHARIEGKPGLQFVGDKLDEIQISLVFHQHYCVPDVELARLRTAMKAHQALALVFGNGDYRGWFVITDVTATS 101
                   89******9.*************************************************************************************** PP

  Phage_P2_GpU  98 sefladGaarkieftlsLkry 118
                   ++++++G++++++ + sL++y
    EHT97684.1 102 EQTDSTGNVLAVNASASLREY 122
                   ********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2177.29
//
Query:       EHT97685.1  [L=70]
Description: putative bacteriophage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-17   61.3   0.0    6.2e-17   61.0   0.0    1.1  1  Phage_tail_X  Phage Tail Protein X


Domain annotation for each model (and alignments):
>> Phage_tail_X  Phage Tail Protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   3.4e-21   6.2e-17       2      58 ..       5      58 ..       4      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 3.4e-21
                  EEEE-TT-SHHHHHHHTTS--TTTHHHHHHHSTTTTTT-S---TTEEEE-TT--SS- CS
  Phage_tail_X  2 kvyatqgdtlDalcwryYGrtlgvveavleaNPgLAelgpvLphGtavelPdisttt 58
                  +v++ +g+++D+l+w+yYG+ lg+  ++++aNP++A   pvLp+G+ + +P+i++ +
    EHT97685.1  5 HVTR-NGERWDSLAWQYYGDPLGY-PRIIAANPHVAIT-PVLPSGLLLLIPVIEAEE 58
                  5666.9******************.*************.**************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 560.76
//
Query:       EHT97686.1  [L=389]
Description: phage late control gene D protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-12   46.8   0.1    3.5e-12   46.2   0.1    1.2  1  Phage_GPD  Phage late control gene D protein (GPD)


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   1.9e-16   3.5e-12      78     303 ..     127     341 ..     120     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.9e-16
   Phage_GPD  78 rrdsriFqnktvpdIleavlaehgiavekrfrlers..ypkreycvQyrESdlaFvsRLleeeGifyffehedgshtLvladassalppsaggpsiryh 174
                 +  sr F  +t+ +I+  ++++h+       +l  s   +k++ ++Qy E+d  F++RL++e+G  + +      ++L+++   +    + g++ +++ 
  EHT97686.1 127 TKSSRGFESTTLAAIAGRIAKKHQL------KLVGSieSIKIDRVTQYAETDVSFLRRLASEYGYAVKVVS----DQLIFSH-LAT---LRGQEPVKQL 211
                 57899****************8633......34443447*****************************998....5676665.444...4467888888 PP

   Phage_GPD 175 rqsgteae..reaitrfaearrlapgkvtlrdydykkpkadlsaeaaqpraaasalevydypg.dyaskaegerlarlrlealrararrfsgesnvrg. 269
                 ++++ ++   r++i r+ ++ +++ +k++ +     +++  +s + + ++++   ++v+   + + +s+    + ar+++++  ar+++++  +++   
  EHT97686.1 212 KPQDVASFslRDTINRVYKSAKVKHQKSSDKKLIVYEADGGTSESDK-QTKG---GKVTSADTlKVNSRVSDPDTARIKADSALARHNEYQQNGSLTLm 306
                 77666664678888888877777777777777766555555544442.2322...33333333345666777778888888888888888876665555 PP

   Phage_GPD 270 ....lapGrtftlsghprkaaanreylitsvehhgenn 303
                     l++G++++l g+    +  + +lit+++h   +n
  EHT97686.1 307 gtpqLTAGNKIELVGFG---QLSGPWLITTARHAFDRN 341
                 5777***********65...489**********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3114.76
//
Query:       EHT97687.1  [L=170]
Description: gpV family phage P2 baseplate assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-19   68.0   0.0    8.5e-19   67.5   0.0    1.2  1  Phage_base_V  Type VI secretion system, phage-baseplate injec
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.049   13.2   0.0    1.3  1  DUF4998       Domain of unknown function


Domain annotation for each model (and alignments):
>> Phage_base_V  Type VI secretion system, phage-baseplate injector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   9.5e-23   8.5e-19      12     112 .]       7     109 ..       4     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 9.5e-23
                   EEEEEEEEETTTTEEEEE..ET.TEEXXXEEEXXSXBSSSBXXXXXXTTXEE.EEEEXXTTTXXEEEEEEEXXSSSXXSXXBTS-EEEE-TTS-EEE CS
  Phage_base_V  12 rlGvvaevdlaaarvrvk..tg.dlltdwlrwlaarAGktrswrapsvGEqv.vllspsGelatavvlpglysdafpapsnsadaevirfpDGavie 104
                   ++G+v++vd+++ ++rv+  +  +l t+wl++l+    ++++++ p vGEqv vll ++G  + +v+l ++ysd  + p ++++++ ++++DGa ++
    EHT97687.1   7 QVGTVSAVDADKVQARVRlpECdNLRTNWLNVLQRNTQNNKDYWLPDVGEQVeVLLDANG--EDGVILGAVYSDVDKPPFSDKNVRGTKYADGAEFS 101
                   579******99966666622543678**************************55666666..58********************************* PP

                   EETTTTEE CS
  Phage_base_V 105 Ydtaakal 112
                   Y++a+++l
    EHT97687.1 102 YNRATHTL 109
                   *****987 PP

>> DUF4998  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.4e-06     0.049       9      58 ..      92     141 ..      85     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-06
     DUF4998   9 kkylkegeivYlgkvdslkafsGknrvklkwllvsdpkitkakifwnnkk 58 
                  ky+++ e  Y+    +l+++ G +rv+++ ++    k +++ ++ +  +
  EHT97687.1  92 TKYADGAEFSYNRATHTLTVKGGIERVVIEVAVGISLKGKTIDLTADTTT 141
                 69*****************************9999888888777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1340.06
//
Query:       EHT97688.1  [L=115]
Description: putative bacteriophage baseplate protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-10   38.9   0.0    6.3e-10   38.7   0.0    1.1  1  GPW_gp25  Gene 25-like lysozyme
     0.0061   16.6   0.0     0.0079   16.3   0.0    1.2  1  DUF2634   Protein of unknown function (DUF2634)


Domain annotation for each model (and alignments):
>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0     7e-14   6.3e-10       3      81 ..      21      95 ..      19     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 7e-14
                HHHHHHHHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--CHHHHHHHHHHHHHHHH-TTEEEEEEEE......CCCCTE CS
    GPW_gp25  3 lresvrrdleiLLntfpgervsvlnyGlpllallfaslsedreriareireailrfEpRirlvsveveveeededargr 81
                  +++ + ++i+L t  g+   ++++G++l+ + + + ++   ++ re  +ai+r+EpR +l sv+ +ve e    + +
  EHT97688.1 21 GLDDIWQAIQIILRTPRGSDPHRPEFGSNLHLYIDWPIDRAIPHVVRESVDAIRRWEPRCQLMSVKPAVEGE----HLT 95
                5689***********************************899999999999**************8844433....344 PP

>> DUF2634  Protein of unknown function (DUF2634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.8e-07    0.0079      19      59 ..      17      56 ..      11      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.8e-07
     DUF2634 19 kivdglEalkqwiykalkTeryryliYsenYGveledligk 59
                +iv+gl+ + q+i+ +l+T+r++ +   +++G++l+ +i  
  EHT97688.1 17 EIVRGLDDIWQAIQIILRTPRGS-DPHRPEFGSNLHLYIDW 56
                79*********************.999*********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 987.00
//
Query:       EHT97689.1  [L=367]
Description: phage-related baseplate assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-73  246.4   0.5    3.8e-73  245.8   0.5    1.3  1  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.8   0.5   2.1e-77   3.8e-73       1     254 [.      69     326 ..      69     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 245.8 bits;  conditional E-value: 2.1e-77
  Baseplate_J   1 rgeyLdrlgelevgvtRkpAtkAsgtvtftgeag....tvIpaGtrvstadglsfatted.titagqgsatvkvtaeeaGaagN..vpagtsllldta 91 
                  r++++d+lgel vgv+R++A++A++t++f+++++    ++IpaGtrvs++d++ fat++d +++ag   ++ ++t++e+GaagN  +pa+ s+ll ++
   EHT97689.1  69 REPMIDYLGEL-VGVYRLAAQPATTTLQFSVDEAlaidVLIPAGTRVSASDSIIFATDTDvVLKAGLLLVNATATCTEPGAAGNgwQPAQVSQLL-DE 164
                  589********.9************************************************************************9999999999.99 PP

  Baseplate_J  92 iagiqsvavantkvssgGadiEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwngpGtVkvvilldngglPtaellakVqayis 188
                  i+  ++ +v+n  +ssgG ++E++++lreRi+la+++++++G++ +Y+++a+++ +++++++vl++   pGtV++++ll++g lP++++l+ V++ +s
   EHT97689.1 165 ID-NVDLQVTNLAASSGGSEQEDNDRLRERIKLAPESFTNAGSRMAYRFHAMQAhPNIVDVAVLSP--VPGTVELYPLLSTG-LPDDSILTLVESFCS 258
                  99.66778888899****************************************************..9**********999.*************** PP

  Baseplate_J 189 .eglrPvtaevtvlaptekavnitat.lllaegtdseavkqaveaaiqayfkeeakp.ggtivlsqiea 254
                   e++rP+t++v +++p++++++i+a+ +++ +++d   +k+++++aiq+++++++++ g++iv+sqi +
   EHT97689.1 259 dEKVRPLTDTVRAKTPVQVDYAIEANiTIY-RDQDANSIKDNANSAIQNWVASRTATlGRDIVPSQIIS 326
                  **************************5555.5688899999**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2725.45
//
Query:       EHT97690.1  [L=192]
Description: putative bacteriophage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-32  110.2   0.0    8.5e-32  109.9   0.0    1.1  1  Tail_P2_I  Phage tail protein (Tail_P2_I)


Domain annotation for each model (and alignments):
>> Tail_P2_I  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.0   4.7e-36   8.5e-32       7     136 .]      15     162 ..       9     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 4.7e-36
   Tail_P2_I   7 aleralaalaarldklpvpirdlwnpdtcpaelLpwLAwelsv..dgWdeawseeakRavikeaielhrlkGTpaavrrvlealgfg.veitE...... 96 
                    ral +la+rld++++++  ++ +d +++++LpwL++++s+  dgW+ a+s++++R +ik+aielhr+kGTp+++r++++++gfg v+++E      
  EHT97690.1  15 ISLRALGRLAGRLDNIDLSVLMVYLVDIVDSSALPWLGEQFSLfgDGWELAESDDVRRMLIKSAIELHRYKGTPWSIREIIRRFGFGeVDLIEgtgqig 113
                 5679**********************************************************************************88*********** PP

   Tail_P2_I  97 ..................Wweyrkpytfkvelevs.eqgiteeqaaelrrlvaaakpar 136
                                   W+ y          +v+ +q+it++qaa lr+++aa++par
  EHT97690.1 114 ydgkhtynglfvhgdaeaWAVY----------RVIlQQPITNDQAALLRQTLAAFAPAR 162
                 *********8777777777666..........444489*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1400.89
//
Query:       EHT97691.1  [L=283]
Description: bacteriophage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.046   13.6   0.0    1.4  1  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-06     0.046       9      47 ..     103     142 ..     101     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-06
                 HHHHHHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2   9 rvLaaLgrrpgrdl.tvgelarrlglsksavsrilkrLva 47 
                  +LaaL+ + ++ l t +ela++lg ++  ++ +l++L +
  EHT97691.1 103 KALAALAGSAPETLdTLKELADALGNDPNFATTVLNKLAE 142
                 589*******99555***********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2165.62
//
Query:       EHT97692.1  [L=42]
Description: hypothetical protein CKS_5712 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   48.0   0.1    1.4e-12   47.9   0.1    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g
  ------ inclusion threshold ------
      0.011   16.5   0.1      0.012   16.5   0.1    1.0  1  DUF469     Protein with unknown function (DUF469)


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   1.5e-16   1.4e-12      91     129 ..       2      40 ..       1      41 [. 0.97

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.5e-16
   Caudo_TAP  91 lgiatdeEkaaLlawkkYrvlLnrvDvslapdieWPeqP 129
                 lg +++++ka+L  w+ Y +++++vDvs+apd+ WP+ P
  EHT97692.1   2 LGDISEKNKAKLSSWMAYKTAVKAVDVSTAPDVIWPAPP 40 
                 899**********************************99 PP

>> DUF469  Protein with unknown function (DUF469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.5   0.1   1.3e-06     0.012      68     101 .]       3      36 ..       1      36 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
      DUF469  68 gsvteedreaveawlkarsevkevevseLvDawy 101
                 g ++e++++++++w++ ++ vk+v+vs   D+ +
  EHT97692.1   3 GDISEKNKAKLSSWMAYKTAVKAVDVSTAPDVIW 36 
                 889**************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 363.38
//
Query:       EHT97693.1  [L=136]
Description: hypothetical protein CKS_5713 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   85.9   0.1    2.9e-24   85.7   0.1    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   1.6e-28   2.9e-24      12     130 .]       8     132 ..       4     132 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1.6e-28
   Caudo_TAP  12 kieydkeggelpesvvevs.dinee.lkiqpkgkflvsdgeglpawvedk...keeqiqqAeqekqqllaqAseqiaplq..davdlgiatdeEkaaLl 103
                 k+ y ++ g +p++v+++s +  ee  ++ p gk l  d++  p+wv+++   ++e+i+ Ae  k +++ +A++ +++ q   ++++g++  +E +++ 
  EHT97693.1   8 KQLYVDA-GTWPDDVIAISeETAEEfNQQFPIGKTLSHDENSQPCWVDIPpptHDELIAMAELDKLRRIGEANNFMNDKQwsGKAAIGRLKGDELERYG 105
                 5556666.***********977776699************************************************9877779**************** PP

   Caudo_TAP 104 awkkYrvlLnrvDvslapdieWPeqPe 130
                  w +Y+++L +vD+s+apdi+WP qPe
  EHT97693.1 106 LWLDYLDALDAVDTSSAPDIDWPIQPE 132
                 **************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1182.09
//
Query:       EHT97694.1  [L=193]
Description: Hin family DNA-invertase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-45  152.8   0.2      1e-44  152.2   0.2    1.2  1  Resolvase  Resolvase, N terminal domain
    3.4e-13   49.4   0.1    1.5e-12   47.4   0.0    2.0  2  HTH_7      Helix-turn-helix domain of resolvase
     0.0071   16.1   0.0      0.017   14.9   0.0    1.6  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.014   16.0   0.2      0.026   15.1   0.2    1.5  1  HTH_32     Homeodomain-like domain
      0.018   14.8   0.1      0.083   12.7   0.1    2.2  2  HTH_38     Helix-turn-helix domain
      0.022   14.5   0.0      0.047   13.4   0.0    1.5  1  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
      0.067   13.2   1.8        0.4   10.7   0.1    2.4  2  HTH_29     Winged helix-turn helix
      0.069   12.9   0.0       0.14   11.9   0.0    1.5  1  HTH_psq    helix-turn-helix, Psq domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.2   4.5e-48     1e-44       1     145 [.       3     136 ..       3     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 4.5e-48
                 EEEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEE CS
   Resolvase   1 aigYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvs 99 
                 +igY+RvSt +q+   + Q++al+ + +++   i   feD+ +SG+ + Rpglkr+l+ + +  gd+lvv+kldRL+Rsv++l+ l+ el+e+g++++s
  EHT97694.1   3 VIGYIRVSTIDQN--SDLQRNALTSANCDR---I---FEDR-MSGKVASRPGLKRALKCVNS--GDTLVVWKLDRLGRSVKNLIALISELHERGAHFRS 90 
                 69***********..***********9666...9...****.********************..*********************************** PP

                 SS..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 100 ldegidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 l+++idtst+mgr+++++++alae+ereli ert +glaaa+a+G+
  EHT97694.1  91 LTDSIDTSTAMGRFFFHVMSALAEMERELIVERTLAGLAAARAQGR 136
                 **99*****************************************8 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.89     2e+03      10      21 ..      74      85 ..      69      90 .. 0.79
   2 !   47.4   0.0   6.6e-16   1.5e-12       1      43 [.     139     181 ..     139     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.89
                HHGGGGSSTTTT CS
       HTH_7 10 dinrvvkLleeG 21
                 i+ + +L+e G
  EHT97694.1 74 LIALISELHERG 85
                5789999**999 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 6.6e-16
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--SS- CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYRyla 43 
                 GRp +l++++ +++++Ll +G++++++A++++++ sT+YRy++
  EHT97694.1 139 GRPNALKPHEREQIGRLLTKGHTRQQLAIIYGVGLSTLYRYFP 181
                 9****************************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.6e-06     0.017       6      37 ..     148     179 ..     143     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.6e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvyrw 37 
                 eR +i +ll +G+++++ A ++gv  +T+yr+
  EHT97694.1 148 EREQIGRLLTKGHTRQQLAIIYGVGLSTLYRY 179
                 67788899999********************8 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.1e-05     0.026      13      72 ..     124     179 ..     115     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      HTH_32  13 GlegLkdrprrg....rprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyri 72 
                  l+gL+ ++ +g    rp+ l + +r++i +ll ++   + +qla  +     + v  st yr+
  EHT97694.1 124 TLAGLAAARAQGriggRPNALKPHEREQIGRLL-TK-GHTRQQLAI-I-----YGVGLSTLYRY 179
                 4566664433322335*****************.55.458888888.6.....68999999986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   3.2e+03      13      24 ..      78      89 ..      76      99 .. 0.75
   2 ?   12.7   0.1   3.7e-05     0.083       4      39 ..     143     178 ..     140     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38 13 IerllaeGlslr 24
                I  l+++G  +r
  EHT97694.1 78 ISELHERGAHFR 89
                889999997766 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.7e-05
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgrspsTIsR 39 
                  L ++eRe+I rll +G++  + A + g+  sT +R
  EHT97694.1 143 ALKPHEREQIGRLLTKGHTRQQLAIIYGVGLSTLYR 178
                 5899***************99999888877777776 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.047      21      40 ..     161     180 ..     158     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
   HTH_Tnp_4  21 tyqdLayrFgvsestvsrif 40 
                 t q+La+++gv  st +r+f
  EHT97694.1 161 TRQQLAIIYGVGLSTLYRYF 180
                 89*****************9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5      0.13     3e+02      40      62 ..     127     149 ..     120     150 .. 0.78
   2 ?   10.7   0.1   0.00018       0.4       3      32 ..     151     179 ..     149     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.13
      HTH_29  40 Glaalld.rrrsgrprnrlseeqe 62 
                 Glaa++  +r +grp+  l+++++
  EHT97694.1 127 GLAAARAqGRIGGRPNA-LKPHER 149
                 88888886666899986.999887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrw 32 
                 q+ +ll +G+ t +q+A ++g+  +t yr+
  EHT97694.1 151 QIGRLLTKGH-TRQQLAIIYGVGLSTLYRY 179
                 7899******.9*****************8 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.4e-05      0.14      20      37 ..     163     180 ..     157     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
     HTH_psq  20 rkAArkYgiPrsTLwrrk 37 
                 +++A +Yg+  sTL+r++
  EHT97694.1 163 QQLAIIYGVGLSTLYRYF 180
                 89*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1642.17
//
Query:       EHT97695.1  [L=127]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-23   81.1   0.0    8.2e-23   80.9   0.0    1.0  1  adh_short        short chain dehydrogenase
    1.2e-19   70.8   0.1    1.4e-19   70.6   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    4.1e-07   30.1   0.0    4.8e-07   29.9   0.0    1.0  1  KR               KR domain
  ------ inclusion threshold ------
      0.018   16.0   0.1      0.025   15.6   0.1    1.4  1  LytR_C           LytR cell envelope-related transcriptional a
      0.051   13.0   0.0      0.056   12.9   0.0    1.0  1  Epimerase        NAD dependent epimerase/dehydratase family
       0.08   13.0   0.0      0.095   12.7   0.0    1.3  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   2.7e-26   8.2e-23       1     109 [.       7     116 ..       7     124 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.7e-26
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 kv++vt  +sGIG  +a+ la++G+++ +   + ee ++++a  ++e+g++a +iq+D++d  e  +++++ ++klg++dvLvnNAG + +++f +++ 
  EHT97695.1   7 KVAIVTASDSGIGSRCAEMLAEQGFDIGItWRSDEEGAQRTARRVEETGQRAETIQLDLADPPEGGKVLQQLIDKLGRIDVLVNNAGANFKADFMDVTW 105
                 89***************************4555566677788888888*************************************************** PP

                 HHHHHHHHHHT CS
   adh_short  99 eewervievNl 109
                 e+w+++++v +
  EHT97695.1 106 EDWRKTFSVVM 116
                 *******9966 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.1   4.8e-23   1.4e-19       3     104 ..      14     117 ..      11     122 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 4.8e-23
                   T.TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   3 a.sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                     sgIG  +A+ lae+G ++ +t +++e+ ++r+++ +ee+g+++  +++D +d+ +  ++ +++ +k+g++D+lvnnag   k  ++f+++++e++
    EHT97695.1  14 SdSGIGSRCAEMLAEQGFDIGITWRSDEEgAQRTARRVEETGQRAetIQLDLADPPEGGKVLQQLIDKLGRIDVLVNNAGANFK--ADFMDVTWEDW 108
                   369**************************999999999999987556************************************9..*********** PP

                   HHHHHHHTH CS
  adh_short_C2  96 draldvnly 104
                   +++++v ++
    EHT97695.1 109 RKTFSVVMR 117
                   ****99765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.6e-10   4.8e-07       5     110 ..      11     113 ..       8     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.6e-10
                 EETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HH CS
          KR   5 itGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtae 103
                 +t    g+G   a++lae+g   + ++ Rs   +e ++++ +++e++g + e++++D++d+ +  ++l+++ ++ ++i   ++ Ag+  ++ ++++t e
  EHT97695.1  11 VTASDSGIGSRCAEMLAEQGF-DIGITWRS--DEEGAQRTARRVEETGQRAETIQLDLADPPEGGKVLQQLIDKLGRIDVLVNNAGANFKADFMDVTWE 106
                 6666679*************6.68999999..77888899*********************************************************** PP

                 HHHHHHT CS
          KR 104 dleqvla 110
                 d+++ ++
  EHT97695.1 107 DWRKTFS 113
                 ***9987 PP

>> LytR_C  LytR cell envelope-related transcriptional attenuator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   8.4e-06     0.025       4      65 ..       8      68 ..       5      95 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.4e-06
      LytR_C  4 VeVlNgtgvsGlAarvadaLeerGftvgevgnagnadee....ttivyreaaaaaakalaaalglg 65
                V+++ +++ sG+ +r+a+ L+e+Gf++g   ++ ++ ee    t  + +e + + a++++ +l  +
  EHT97695.1  8 VAIVTASD-SGIGSRCAEMLAEQGFDIGI--TWRSD-EEgaqrTARRVEETG-QRAETIQLDLADP 68
                66666666.9*****************99..33333.334555444443333.4788888887644 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05     0.056      10      91 ..      18     111 ..       9     118 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase  10 iGsalvkallekgyevigldrlssasntarledl.......elveldltdrs....alerlfkee.qpdavihlAavggvaassedpadfiekn 91 
                 iGs  ++ l+e+g ++    r  +++++   +++       e ++ldl d+      l++l+++  ++d+ ++ A+    a+ ++   + ++k+
  EHT97695.1  18 IGSRCAEMLAEQGFDIGITWRSDEEGAQRTARRVeetgqraETIQLDLADPPeggkVLQQLIDKLgRIDVLVNNAGANFKADFMDVTWEDWRKT 111
                 9************885444444444444444444579*************9877778999999999*******999887777776666666665 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.2e-05     0.095       1      38 [.       7      45 ..       7      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
  Glyco_trans_4_2  1 killlanlssvhtlrlakeLakrgyeVhvitpkkga.kd 38
                     k++++++ +s+  +r+a++La++g+++ +  + +++  +
       EHT97695.1  7 KVAIVTASDSGIGSRCAEMLAEQGFDIGITWRSDEEgAQ 45
                     89**************************99886664344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 954.97
//
Query:       EHT97696.1  [L=108]
Description: uncharacterized DUF1493 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-22   80.0   1.8    1.9e-22   79.8   1.8    1.0  1  DUF1493   Protein of unknown function (DUF1493)


Domain annotation for each model (and alignments):
>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   1.8     1e-26   1.9e-22       5     110 .]       4     108 .]       2     108 .] 0.89

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 1e-26
     DUF1493   5 ekevlelireelg.tklfkgkeveltldtdldedlkldeddaedllekffkrfnVdrgnfkiktYfvp.dtpllvileylkkkevere.kplTiamlie 100
                 +++vl+++r++l+ ++ f+ k v+l+ ++ l+e   +++dd+ ++++k+  +fn+d ++++i +Yf p +tp +   e +kk+ v+++ kplT++m++e
  EHT97696.1   4 DEQVLDFFRQNLPqVRTFSFKIVPLEINDTLQE--YAEFDDLVEAINKYSDQFNIDVSKLNIDNYF-PwKTPWF-FHEWFKKEPVKQNkKPLTVSMFAE 98 
                 579********96267788************55..5899***************************.7466665.789999998888779********* PP

     DUF1493 101 sakaGrWLYd 110
                 sakaGrW+Y+
  EHT97696.1  99 SAKAGRWIYE 108
                 *********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 844.42
//
Query:       EHT97697.1  [L=244]
Description: hypothetical protein CKS_5876 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1766.10
//
Query:       EHT97698.1  [L=634]
Description: Gp29 Protelomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-17   63.2   0.0    3.9e-17   62.6   0.0    1.3  1  Telomere_res  Telomere resolvase


Domain annotation for each model (and alignments):
>> Telomere_res  Telomere resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   2.2e-21   3.9e-17     113     274 .]     263     428 ..     211     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 2.2e-21
                   HHHHHHHHH---HHHHHHT-EEEEEEETEEEEEEEEEE--SS-TS-TT--EEEE-SS-HHHHHHHHHHHH....HSHHHHHHTT--...HHHHHHHH CS
  Telomere_res 113 kviglllltGRRheEvlkkgkfdkadktdveknsilfegqaKkkeneaivyeipvlapaetilnaikrlR....esdaieqleglt...Skelalkv 202
                   ++ +l+++ GRR  E++ +g+f+         n + f gqaKk+ +++ +  i +l +ae+ +n ++ lR      d  + ++g     S+  + ++
    EHT97698.1 263 LAFALAAVSGRRMIEIMFRGEFEVVGP-----NEVAFVGQAKKRTDDGAPRTIYTLCDAELFINRLEALRscaaAADFEQVIKGYGendSRSENGRI 354
                   578999******************999.....89************************************665433333334443367766656666 PP

                   HHHHHHHHTT....TS-TTS---TT.HHHHHHHHHHHHHH--T.....TS-HHHHHHHHTT-STT--SGGGGG--EE- CS
  Telomere_res 203 rrevkqlfqdilPilagketllsvy.nlRsvYaaiayqlfapk.....nvtenlfvkailGHeeddletalsYldYeL 274
                   +  + + f+  +  +  ++    vy   R++Ya+iay  +  +     +++e++f+ +ilGH +++  t l+Y +++L
    EHT97698.1 355 NAILAKAFNPWVKQFFNDD--RRVYkDSRAIYARIAYETWFRHdarwaDKDEDVFFSEILGHDDEN--TQLHYKQFKL 428
                   6666666666444444445..3456259*********986555588999*************7665..6688998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4203.93
//
Query:       EHT97699.1  [L=108]
Description: Gp23 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 814.15
//
Query:       EHT97700.1  [L=42]
Description: hypothetical protein CKS_5561 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 320.90
//
Query:       EHT97701.1  [L=1332]
Description: replication origin binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-05   25.7   0.2    0.00012   22.4   0.0    2.9  2  Toprim_3       Toprim domain
    1.5e-05   23.3   0.0    5.2e-05   21.5   0.0    1.7  1  Herpes_ori_bp  Origin of replication binding protein
  ------ inclusion threshold ------
       0.17   12.0   0.0       0.74    9.9   0.1    2.0  2  PRC            PRC-barrel domain


Domain annotation for each model (and alignments):
>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     2e-08   0.00012       2      94 ..     277     382 ..     276     383 .. 0.78
   2 ?   -1.3   0.1      0.47   2.8e+03      29      70 ..     876     916 ..     861     929 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2e-08
    Toprim_3   2 liivEGietaLsi...leartgaaviAllsaanlkaiawp....ergkrvviaaDnDaand..Greaaeklaerlea.agieavllep....aegeDwn 86 
                 + ++EG++ a+s+   + +r++ avi + sa+n+k i  +    e + ++v ++DnD ++   G   +++ +e l+a  + +++   p    + g+D+n
  EHT97701.1 277 IGVAEGFASAASAylaDPERFD-AVIMAVSANNMKHIVDQliglESAAEIVCLLDNDRKAPgeGNTGMRTGVEILQAyPDHNIRCQFPtfdgPTGNDFN 374
                 679**********864334444.599999******9988889999**************98995555566666666555555556666668999***** PP

    Toprim_3  87 dvlqkeGa 94 
                 d++++ G+
  EHT97701.1 375 DLFVQAGK 382
                 *****997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
    Toprim_3  29 aanlkaiawpergkrvviaaD.nDaandGreaaeklaerleaa 70 
                  +n++ +++++   rv   +D  D a    + + ++ e++ ++
  EHT97701.1 876 LGNVSDVQFDKSTGRVSFGLDdSDFA--DMQIHLAAQEAASRN 916
                 58999999**9999999999967777..444444444444444 PP

>> Herpes_ori_bp  Origin of replication binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   8.8e-09   5.2e-05      19     340 ..     492     818 ..     481     824 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 8.8e-09
  Herpes_ori_bp  19 evilknhpgitlerqadspvtfpkplesrtrpvl...vvRApmGsGkttALiewLkevldsedlsvlvvsCRrsFtntlserfn......raGlsg 105
                    +   k  + +t  r +d+ ++     + ++r+v+   + RApmGsGkt  +++ L ++       + v++ R +   ++   ++      +    g
     EHT97701.1 492 DPA-KRPAHVTYTRLQDTKISKKILAMVQKRAVTgpvILRAPMGSGKTKEMLRPLMQA----AFRAFVMANRVALMSSMHDVMQlsddssSTADAG 582
                    544.34458999999999999888888899999666599**********999988877....4556666666666666555444111100333344 PP

  Herpes_ori_bp 106 FvtYldseeyilnerefrrlivqlEsLhRvs.enlldnYDvlilDEvmsiigq.lysptmrrlkevDslllsLlrrcs.kviAmDAtvnaqlvdll 198
                       Y d  +  +   + ++l + ++s+ + + + l+ n D + lDE    +   l  + m+r  +v + l+  + r+    +  DA +n  l+ +l
     EHT97701.1 583 IFYYRDDLN-GIPPETINKLTICINSIIKDKwQPLVHNHDFVGLDEATQCLRAiLVGKAMERQVAVFNHLVDAFARTDgTALMADADANDSLITFL 677
                    445555555.5555699*********9765426799***********9998652789*********999988776665155666***********9 PP

  Herpes_ori_bp 199 aalrgdenihvivseyvsagFsnRecvilrslgtellasvlrpkksssnessaais.aadatFFaeLearLeggeniClFsstvsfseivarfcae 293
                      +   ++          +g+s+   + + +l t+ l      + + s ++ +    + +   F e+++ ++ +e++ + +   +f   +++ ++e
     EHT97701.1 678 ELVMKRRQ------ALGIPGWSH---IHVIDLSTDDLF----VPDDGSAPHKRRVVhTDRDRLFLEITRAVKADEKVLVATDSKAFGSGIYEHLRE 760
                    65444443......334456665...445577777777....46777777776666255556999*********************9999998888 PP

  Herpes_ori_bp 294 v.tdkvLlLnstrpkv..dvesWs........ryrvviYttvvtvGLsFddshFhslF 340
                      +dk  l  s+  k   dve ++        +y+ +iY   +  G+s +  hF   F
     EHT97701.1 761 TfPDKKFLYVSQDTKQlpDVEAFTdkpnnqavHYDGLIYSPAISSGVSIEVKHFTRHF 818
                    778887777765444334998764333333338*********************8766 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.1   1.2e+04      30      47 ..     625     642 ..     625     647 .. 0.81
   2 ?    9.9   0.1   0.00012      0.74      13      38 ..     869     892 ..     866     901 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
                 EETTTTEEEEEEEEETTT CS
         PRC  30 idekegrvralvvsvggf 47 
                 +de+++ +ra++v++ + 
  EHT97701.1 625 LDEATQCLRAILVGKAME 642
                 6999*********98764 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00012
                 EEEETTSSEEEEEEEEEEETTTTEEE CS
         PRC  13 eVytedGeklGkVkDvvidekegrvr 38 
                 ++yt++   lG V+Dv +d+ +grv 
  EHT97701.1 869 TIYTDN--VLGNVSDVQFDKSTGRVS 892
                 567776..9***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 8996.50
//
Query:       EHT97702.1  [L=214]
Description: prophage repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-07   31.8   0.1    2.2e-07   30.8   0.0    1.6  2  HTH_3          Helix-turn-helix
    6.6e-06   26.1   0.0    1.1e-05   25.4   0.0    1.4  1  Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix do
    0.00015   22.1   0.1    0.00026   21.3   0.1    1.4  1  HTH_31         Helix-turn-helix domain
    0.00024   21.0   0.0    0.00062   19.7   0.0    1.7  1  HTH_19         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.9   8.7e+03       1      10 [.       7      16 ..       7      19 .. 0.77
   2 !   30.8   0.0   4.9e-11   2.2e-07      10      55 .]      25      70 ..      21      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.9
                HHHHHHHTTH CS
       HTH_3  1 lkelRkqlgl 10
                lk++R++l+ 
  EHT97702.1  7 LKARREALKN 16
                7999998875 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 4.9e-11
                HHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                 s++ +Ae++Gvs + +s++E+ +++P+l+ + kla+ +g s +++
  EHT97702.1 25 FSLRGVAERVGVSAAGLSNLERTDAMPTLDLAMKLANDYGKSVEWI 70
                68889**************************************996 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.4e-09   1.1e-05      18      63 ..      30      76 ..      20      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.4e-09
                   HHCCTT--HHHHHHHHHSSS--.HHHHHHHHHHH---HHHHHC-SS- CS
  Phage_CI_repr 18 LAdlLgiakssvstwvrRdffP.gdvvvtcaletdtsLewLatGkgq 63
                    A++ g++ + +s++ r d +P  d+ +++a + + s ew++tGk++
     EHT97702.1 30 VAERVGVSAAGLSNLERTDAMPtLDLAMKLANDYGKSVEWILTGKDT 76
                   5999*****************************************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   5.7e-08   0.00026       3      54 ..       4      63 ..       4      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.7e-08
      HTH_31  3 GalLralRera.........GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaral 54
                G+ L+a+Re+            s++ vAer+gvs++ ls lE+     p+++   +la+ +
  EHT97702.1  4 GQWLKARREALknsdkgtasDFSLRGVAERVGVSAAGLSNLERTDAM-PTLDLAMKLANDY 63
                77899****99********99**********************9995.9998888887755 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-07   0.00062      13      64 ..      25      75 ..      24      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-07
      HTH_19 13 ltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllqged 64
                ++++ +aer+g+s + +s++E     +p+ +l  k+a+ +g ++e++l+g+d
  EHT97702.1 25 FSLRGVAERVGVSAAGLSNLERTDA-MPTLDLAMKLANDYGKSVEWILTGKD 75
                68899*******************9.***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1526.70
//
Query:       EHT97703.1  [L=72]
Description: Cro repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-20   71.2   0.1    5.4e-20   71.0   0.1    1.1  1  P22_Cro         DNA-binding transcriptional regulator Cro
    0.00086   19.2   0.0     0.0013   18.6   0.0    1.3  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0016   18.2   0.0      0.002   17.9   0.0    1.1  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
     0.0016   18.1   0.2     0.0044   16.8   0.0    1.7  2  HTH_23          Homeodomain-like domain
     0.0029   17.6   0.6       0.02   14.9   0.0    1.9  2  HTH_29          Winged helix-turn helix
     0.0089   15.8   0.1      0.015   15.1   0.1    1.3  1  HTH_30          PucR C-terminal helix-turn-helix domain
     0.0091   16.2   0.1      0.014   15.6   0.1    1.3  1  NUMOD1          NUMOD1 domain
  ------ inclusion threshold ------
      0.012   15.7   0.1      0.012   15.7   0.1    1.8  2  HTH_28          Helix-turn-helix domain
      0.017   15.2   0.1      0.028   14.5   0.1    1.4  1  HTH_22          HTH domain
      0.019   14.8   0.0      0.033   14.0   0.0    1.4  1  HTH_8           Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1     3e-23   5.4e-20       1      52 [.       2      53 ..       2      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 3e-23
                .HHHHHHHHSSHHHHHHHHTS-HHHHHHHHTC--HHHHHHHHHHTTTSS--H CS
     P22_Cro  1 kkkdvikhFGgvekvAkalgvtksAVsqWgeeiPelrayqierlTaGkLkvq 52
                k++dvi+h+G+++++Akal+ +  +V+qWgee+P+ r+y++e+ TaG+L ++
  EHT97703.1  2 KTSDVIAHYGSIARAAKALNLSRHSVYQWGEEVPPARQYELEVKTAGALISD 53
                799**********************************************887 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.4e-07    0.0013       6      30 ..       3      27 ..       1      30 [. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.4e-07
                HHHHHHHHSSHHHHHHHHTS-HHHH CS
       HTH_1  6 lfvavaeegsftrAAeeLglsqpav 30
                + + +a  gs++rAA++L+ls  +v
  EHT97703.1  3 TSDVIAHYGSIARAAKALNLSRHSV 27
                55789****************9888 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06     0.002       4      50 ..       6      49 ..       4      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
  YdaS_antitoxin  4 aieivGgqkaLAealgvsqqaVsqWlkgkkqvpaervpeIekatnGe 50
                    +i   G+ ++ A+al+ s+  V+qW  g  +vp+ r  e+e  t G+
      EHT97703.1  6 VIAHYGSIARAAKALNLSRHSVYQW--G-EEVPPARQYELEVKTAGA 49
                    678899*******************..3.88**********999997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.4e-06    0.0044      19      37 ..      12      30 ..       7      33 .. 0.95
   2 ?   -1.4   0.0       1.2   2.2e+03      38      47 ..      51      60 ..      37      62 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
      HTH_23 19 svreIAreLgvsrrTvyrw 37
                s++++A++L+ sr+ vy+w
  EHT97703.1 12 SIARAAKALNLSRHSVYQW 30
                789**************** PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
      HTH_23 38 lkryreeGle 47
                ++ y +e+++
  EHT97703.1 51 ISDYSREQAA 60
                4444444444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05      0.02      14      34 ..      12      32 ..       7      34 .. 0.87
   2 ?    1.1   0.2      0.22   3.9e+02      20      54 ..      38      71 ..      37      72 .] 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlk 34
                +++++Ak+l+lsr +vy w +
  EHT97703.1 12 SIARAAKALNLSRHSVYQWGE 32
                59*****************76 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
      HTH_29 20 kllglsrrtvyrwlkrfeegGlaalldrrrsgrpr 54
                +++ l  +t    + ++  + +a++ ++rr +r++
  EHT97703.1 38 RQYELEVKTAGALISDYSREQAAGTPSGRR-KRGK 71
                555666666666777788888777644444.5544 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   8.3e-06     0.015       9      31 ..       7      29 ..       5      30 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.3e-06
                HHTTT-HHHHHHHHTS-HHHHHH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlry 31
                +++ g+i+++AkaL+++r+++++
  EHT97703.1  7 IAHYGSIARAAKALNLSRHSVYQ 29
                5788*****************97 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     8e-06     0.014      13      34 ..       7      28 ..       1      29 [. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8e-06
      NUMOD1 13 igkFsSireAakyLgishntIn 34
                i  + Si +Aak+L+ s+++++
  EHT97703.1  7 IAHYGSIARAAKALNLSRHSVY 28
                55688**************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.1   6.9e-06     0.012      10      32 ..       7      30 ..       4      32 .. 0.90
   2 ?   -2.0   1.1       2.3   4.2e+03      47      47 ..      66      66 ..      45      72 .] 0.60

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.9e-06
      HTH_28 10 aaGh.svreaArelgisrrtvyrW 32
                +a+  s++ aA++l++sr +vy+W
  EHT97703.1  7 IAHYgSIARAAKALNLSRHSVYQW 30
                56777******************* PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
      HTH_28 47 r 47
                r
  EHT97703.1 66 R 66
                3 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.6e-05     0.028      42      60 ..      11      29 ..       2      30 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
      HTH_22 42 gavekvAekLgiSraTvYr 60
                g++   A++L+ Sr++vY 
  EHT97703.1 11 GSIARAAKALNLSRHSVYQ 29
                8999**************6 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.033      17      36 ..       9      28 ..       5      29 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                TTT-HHHHHHHHTS-HHHHH CS
       HTH_8 17 tgGnkskAArlLGisRrtLy 36
                + G +++AA+ L++sR ++y
  EHT97703.1  9 HYGSIARAAKALNLSRHSVY 28
                5589************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 526.93
//
Query:       EHT97704.1  [L=225]
Description: antiterminator Q [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-49  168.6   0.0    1.9e-49  168.2   0.0    1.0  1  Phage_antiter_Q  Phage antitermination protein Q
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.24   11.3   0.1    1.4  1  Nucleic_acid_bd  Putative nucleic acid-binding region


Domain annotation for each model (and alignments):
>> Phage_antiter_Q  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   0.0   2.1e-53   1.9e-49       4     212 ..       4     211 ..       3     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.2 bits;  conditional E-value: 2.1e-53
  Phage_antiter_Q   4 eyvReqlitAlaDisgetkGqLvaleenalvetdrykrkklrvidevegslitldaePvkakqsrakkksiilvkeveystasWRRAvlaldee 97 
                      eyvReql++Al D+   +kGq++ + +   +  d y+++++r   e ++s+++++aePv++++++  k++++l+ e  ++t  WR Av +l + 
       EHT97704.1   4 EYVREQLRVALCDLPLGQKGQIAIMSDM--AGGDDYTDRPTRE-VESGESVVKIEAEPVRYREGKKYKQNKPLILEAAFKTGIWRQAVNKLPDL 94 
                      7*********************999886..5789********8.688999******************************************** PP

  Phage_antiter_Q  98 ekAWllycYsektkykeqveivqylWekFl...aqlkgkrlaaktkerlraLvwlavqdvkkeladreidsyeraelaslvGvskknWketykk 188
                      + AW +ycY+e +k+++q+ i++ +W++Fl   +++  +++a k++++lr Lv+lavq    ++++ + + y+ a l++l G++ +nW+ +y  
       EHT97704.1  95 HLAWAKYCYGEDLKFDHQLIICKDIWDRFLvreSETRTRKMAEKMQQKLRSLVLLAVQVSVGKVRGPQLE-YTGAHLSQLLGIKPNNWQGHYLP 187
                      ******************************88888999****************************9996.*********************** PP

  Phage_antiter_Q 189 rWlalkelfleldkeallsvaekr 212
                      rW +l +l++eld+e + +v+++ 
       EHT97704.1 188 RWSLLLALCEELDNEVIAHVERQH 211
                      *****************9998875 PP

>> Nucleic_acid_bd  Putative nucleic acid-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.6e-05      0.24      54      82 ..     126     154 ..     120     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
  Nucleic_acid_bd  54 rEaaelLRllanlndprlrelgilsvQie 82 
                      rE + + R +a++ +++lr l +l vQ+ 
       EHT97704.1 126 RESETRTRKMAEKMQQKLRSLVLLAVQVS 154
                      9**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1656.13
//
Query:       EHT97705.1  [L=38]
Description: hypothetical protein CKS_5566 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 309.77
//
Query:       EHT97706.1  [L=214]
Description: recombination associated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0058   15.9   0.0      0.007   15.7   0.0    1.2  1  RdgC      Putative exonuclease, RdgC


Domain annotation for each model (and alignments):
>> RdgC  Putative exonuclease, RdgC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.9e-07     0.007     108     169 ..       4      65 ..       1     132 [. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.9e-07
        RdgC 108 evveeLLPrAFsksrktaawidtengllvvdaaSakkaeevlslLrkslgslpvkplqteqs 169
                 +   e L  A  +++ +++++d + g ++   +Sa ++ ++l++Lr ++gsl+ +pl +  +
  EHT97706.1   4 QAEREVLKTAPIRETIVYLIFDENVGRIWCGGSSAGQCQKALKHLRSAIGSLKTTPLIYDLA 65 
                 5667889999********************************************99966543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1589.64
//
Query:       EHT97707.1  [L=66]
Description: hypothetical protein CKS_5568 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 507.03
//
Query:       EHT97708.1  [L=94]
Description: Gp48 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-09   36.5   0.0    6.3e-09   35.8   0.0    1.4  1  HTH_3           Helix-turn-helix
    3.5e-08   33.7   0.0    5.8e-08   33.0   0.0    1.3  1  HTH_31          Helix-turn-helix domain
    1.9e-07   31.0   0.1    3.9e-07   30.0   0.0    1.5  2  HTH_19          Helix-turn-helix domain
    6.4e-07   29.2   0.0    6.8e-07   29.2   0.0    1.2  1  HTH_37          Helix-turn-helix domain
    3.2e-05   24.3   0.0    5.7e-05   23.5   0.0    1.4  2  HTH_26          Cro/C1-type HTH DNA-binding domain
    0.00015   21.3   0.3     0.0012   18.4   0.1    2.1  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00047   20.0   0.5     0.0012   18.7   0.5    1.8  1  HTH_25          Helix-turn-helix domain
    0.00087   19.1   0.1     0.0018   18.1   0.1    1.5  2  MarR_2          MarR family
     0.0017   18.5   0.2     0.0041   17.3   0.0    1.7  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0029   17.5   0.2     0.0064   16.4   0.1    1.5  2  MarR            MarR family
  ------ inclusion threshold ------
      0.032   14.1   0.1      0.058   13.2   0.1    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.072   12.9   0.0       0.25   11.2   0.0    1.7  2  HTH_23          Homeodomain-like domain
      0.093   12.4   0.0       0.16   11.6   0.0    1.4  1  CENP-B_N        CENP-B N-terminal DNA-binding domain
      0.096   12.5   0.0       0.11   12.4   0.0    1.2  1  SIS             SIS domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   4.9e-12   6.3e-09       3      53 ..      38      88 ..      36      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.9e-12
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                 +R+ ++++++eLA++l++ +s+i+++E++    sl+tl ++aka+g ++d
  EHT97708.1 38 SMREHAKITKAELARRLNIQPSAITNLEKNPLGASLKTLNRYAKACGATFD 88
                68****************************888**************9887 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   4.5e-11   5.8e-08       5      57 ..      35      86 ..      31      88 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 4.5e-11
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                 L+ +Re a ++++e+A+rl++ +s ++ lE    g  s+ +l+++a a+g++
  EHT97708.1 35 ALHSMREHAKITKAELARRLNIQPSAITNLEKNPLG-ASLKTLNRYAKACGAT 86
                6999*******************************9.**************96 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.5   5.7e+03      25      32 ..      16      23 ..       5      30 .. 0.51
   2 !   30.0   0.0     3e-10   3.9e-07       2      53 ..      34      84 ..      34      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.5
      HTH_19 25 srskisai 32
                s+ +  a+
  EHT97708.1 16 SPESVEAY 23
                24444444 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 3e-10
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealg 53
                e L  +Re++++t++ela+rl i +s i+++E++    +s ++l+++a+a+g
  EHT97708.1 34 EALHSMREHAKITKAELARRLNIQPSAITNLEKNPL-GASLKTLNRYAKACG 84
                567889****************************77.88899*******998 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   5.3e-10   6.8e-07      19      75 ..      32      87 ..       8      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.3e-10
                HHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEE CS
      HTH_37 19 lalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkv 75
                ++ a+  ++e+ +++++e+a++l+i+ + +++l++ +    sl++L ++++a G + 
  EHT97708.1 32 VLEALHSMREHAKITKAELARRLNIQPSAITNLEK-NPLGASLKTLNRYAKACGATF 87
                4446999***************************8.88889************9875 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.3   1.2e+04      13      19 ..       6      12 ..       4      22 .. 0.51
   2 !   23.5   0.0   4.5e-08   5.7e-05       5      53 ..      39      86 ..      35      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.3
      HTH_26 13 kseLarg 19
                +seL ++
  EHT97708.1  6 VSELKQD 12
                3444433 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 4.5e-08
      HTH_26  5 lmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgct 53
                +  + +itk+eLar+++i+ + +++l k+     sl+tL++ ++a g t
  EHT97708.1 39 MREHAKITKAELARRLNIQPSAITNLEKNPL-GASLKTLNRYAKACGAT 86
                5567789**********************76.***********997765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   9.3e-07    0.0012       9      35 ..      36      62 ..      27      64 .. 0.80
   2 ?    0.6   0.0      0.33   4.2e+02      27      40 ..      69      82 ..      69      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.3e-07
      HTH_24  9 LelLqknprisqreLAerlglSpstvn 35
                L  ++++++i+ +eLA+rl++ ps+++
  EHT97708.1 36 LHSMREHAKITKAELARRLNIQPSAIT 62
                444566*****************9986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.33
      HTH_24 27 lglSpstvnrrlkr 40
                lg S+ t+nr+ k 
  EHT97708.1 69 LGASLKTLNRYAKA 82
                6889******9875 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.5   9.1e-07    0.0012       2      33 ..      36      67 ..      35      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.1e-07
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEed 33
                L+  Re ++++  e+a++++I+++ +  lE++
  EHT97708.1 36 LHSMREHAKITKAELARRLNIQPSAITNLEKN 67
                8999**************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.4   5.6e+03      22      35 ..       4      17 ..       2      20 .. 0.65
   2 !   18.1   0.1   1.4e-06    0.0018       5      40 ..      30      63 ..      26      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.4
                EEHHHHHHHHTSSH CS
      MarR_2 22 ltvgelarrlglsk 35
                ++v+el + +  s+
  EHT97708.1  4 VSVSELKQDMLSSP 17
                78888877665555 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHH CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsr 40
                +a + +L+  + +    +t +elarrl++ +sa+++
  EHT97708.1 30 LAVLEALHSMREHAK--ITKAELARRLNIQPSAITN 63
                566677888888887..*****************97 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.4     3e+03      22      35 ..       3      16 ..       1      21 [. 0.53
   2 !   17.3   0.0   3.2e-06    0.0041       9      40 ..      32      62 ..      27      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.4
                    SB-HHHHHHHHTS- CS
  Fe_dep_repress 22 vvktkdlaerLnvs 35
                    +v++++l + +  s
      EHT97708.1  3 PVSVSELKQDMLSS 16
                    45555555555555 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3.2e-06
                    HHHHHHHHHHHHSSB-HHHHHHHHTS-HHHHH CS
  Fe_dep_repress  9 YLetIYtlseekkvvktkdlaerLnvspssVs 40
                    +Le++ ++  e++++++++la+rLn++ps ++
      EHT97708.1 32 VLEALHSMR-EHAKITKAELARRLNIQPSAIT 62
                    799999999.999****************988 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.2   4.1e+03      16      30 ..       2      16 ..       1      20 [. 0.67
   2 !   16.4   0.1     5e-06    0.0064       7      37 ..      34      64 ..      28      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.2
                TTEEHHHHHHHHTS- CS
        MarR 16 gplsvseLakklgvs 30
                 p svseL   +  s
  EHT97708.1  2 KPVSVSELKQDMLSS 16
                577888887766555 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 5e-06
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHH CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrv 37
                ++L++ +e+  ++ +eLa++l++++s++t++
  EHT97708.1 34 EALHSMREHAKITKAELARRLNIQPSAITNL 64
                457777777777888**************85 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.5e-05     0.058       9      34 ..      36      61 ..      33      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
  HTH_AsnC-type  9 LeaLqedaRisyaeLAervGlSestv 34
                   L+ ++e a+i+ aeLA+r+++ +s++
     EHT97708.1 36 LHSMREHAKITKAELARRLNIQPSAI 61
                   7888999****************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.25       6      39 ..      31      66 ..      24      68 .. 0.80
   2 ?   -1.0   0.0       1.3   1.7e+03      27      40 ..      69      82 ..      69      85 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
      HTH_23  6 eRlrillllae..GlsvreIAreLgvsrrTvyrwlk 39
                  l++l+  +e  +++++e Ar+L++ ++ + +  k
  EHT97708.1 31 AVLEALHSMREhaKITKAELARRLNIQPSAITNLEK 66
                4466777777789****************9998766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      HTH_23 27 LgvsrrTvyrwlkr 40
                Lg s  T+ r+ k+
  EHT97708.1 69 LGASLKTLNRYAKA 82
                67788888888776 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.16      23      42 ..      44      64 ..      37      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                T.-HHHHHHHHT--CCHHHHH CS
    CENP-B_N 23 e.Skaelarrfnvpestlsdi 42
                +  kaelarr+n+ +s + + 
  EHT97708.1 44 KiTKAELARRLNIQPSAITNL 64
                5679***********998766 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.3e-05      0.11      52      96 ..      27      71 ..       6      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
                STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHH CS
         SIS 52 deddlvilisfsgetkdlvaaaelakergakiiaITdskgsplar 96
                d++  v+   +s +++ ++  aela++ + ++ aIT+ +++pl +
  EHT97708.1 27 DRELAVLEALHSMREHAKITKAELARRLNIQPSAITNLEKNPLGA 71
                55555666668889999*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 732.55
//
Query:       EHT97709.1  [L=99]
Description: Gp49 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-25   88.5   0.0    2.6e-25   88.4   0.0    1.0  1  Gp49      Phage derived protein Gp49-like (DUF891)


Domain annotation for each model (and alignments):
>> Gp49  Phage derived protein Gp49-like (DUF891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.5e-29   2.6e-25       2      90 .]      10      96 ..       9      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.5e-29
        Gp49  2 eldalpkkarakilaaldlleeggpdlgkplvkkledglwElrpksaggiiRvlyafdpgrkvilLhafqKktqktpkkeielAekrlk 90
                el++lp++ r +++++++++e +g +l++p+ k +++gl+Elr+ ++ +i+R ly++  g+ ++lLhaf+Kkt+ktp ++i+lA++rl+
  EHT97709.1 10 ELKSLPDQLRGRMFRLIERMETEG-QLKMPHSKVIGGGLFELRV-GGTDIARTLYCYSDGHTIYLLHAFVKKTEKTPASAIKLARQRLE 96
                89**********************.8******************.5556**************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 854.05
//
Query:       EHT97710.1  [L=73]
Description: hypothetical protein CKS_5571 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 557.57
//
Query:       EHT97711.1  [L=72]
Description: hypothetical protein CKS_5572 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0018   18.4   1.4      0.065   13.4   0.1    2.1  2  MbeD_MobD       MbeD/MobD like
  ------ inclusion threshold ------
      0.014   15.3   0.2      0.017   15.0   0.2    1.1  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.016   14.7   2.1       0.02   14.5   2.1    1.1  1  MscS_porin      Mechanosensitive ion channel porin domain
      0.021   15.2   0.2      0.024   15.0   0.2    1.1  1  V-SNARE         Vesicle transport v-SNARE protein N-terminus
      0.041   13.7   0.1       0.05   13.4   0.1    1.1  1  SKA2            Spindle and kinetochore-associated protein 2
      0.081   13.3   0.5        6.2    7.2   0.0    2.0  2  DUF4200         Domain of unknown function (DUF4200)
       0.17   11.9   3.5       0.26   11.3   3.5    1.4  1  FlxA            FlxA-like protein


Domain annotation for each model (and alignments):
>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.012        31       2      21 ..      14      33 ..      12      37 .. 0.86
   2 !   13.4   0.1   2.5e-05     0.065      38      69 ..      36      67 ..      31      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.012
   MbeD_MobD  2 telekqLLsAlEqLQqdYeq 21
                t  ++q++ A E+LQq + q
  EHT97711.1 14 TSAQNQIMDAGENLQQFFCQ 33
                77899***********8876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.5e-05
   MbeD_MobD 38 eltqrenaaLseqvtgLsqQVesLseqvrRls 69
                +  + e a+L  q+t++ qQ e+  +++r ls
  EHT97711.1 36 GDNSAEGAMLGDQITEIRQQLEDVKRKLRTLS 67
                55678899********************9998 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   6.8e-06     0.017     129     171 ..      22      64 ..       4      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.8e-06
                     HHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHH CS
  Apolipoprotein 129 klaerleelkeslaphaeeveerlssrveelrekleeqaeelr 171
                     + +e+l+++  +l+    + +++l ++++e+r++le+  ++lr
      EHT97711.1  22 DAGENLQQFFCQLTGDNSAEGAMLGDQITEIRQQLEDVKRKLR 64 
                     3678899999999999999999999999999999998888887 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.1   7.8e-06      0.02      81     138 ..       7      65 ..       2      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.8e-06
  MscS_porin  81 eeLeqrllqtssqlqelqeqlaqlnsqlvelqtr.peraqqqltearqrlqeirnrLns 138
                 ++   +l+++++q +++ e+l+q+  ql+  +++  + +  q+te rq+l+++ ++L  
  EHT97711.1   7 QQAWAELTSAQNQIMDAGENLQQFFCQLTGDNSAeGAMLGDQITEIRQQLEDVKRKLRT 65 
                 5556799********************99866651677899*************99965 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   9.4e-06     0.024      24      78 ..      10      64 ..       2      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.4e-06
     V-SNARE 24 kaalreiekkldeaeelldqMelEvrnlpsserasykaklreykselkklkkelk 78
                 a l  +++++ +a e l+q+ + + +  s+e a++  +++e++++l+ +k++l+
  EHT97711.1 10 WAELTSAQNQIMDAGENLQQFFCQLTGDNSAEGAMLGDQITEIRQQLEDVKRKLR 64
                5678899**********************9***********************98 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     2e-05      0.05       9      64 ..      11      66 ..       5      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2e-05
        SKA2  9 alFqkaesdLdyvqhrLekefqqsypdnaeNpvkLlerlkkvkeelqaLkeqceel 64
                a +++a++++    + L++ f+q + dn  + + L  ++++++++l+ +k++++ l
  EHT97711.1 11 AELTSAQNQIMDAGENLQQFFCQLTGDNSAEGAMLGDQITEIRQQLEDVKRKLRTL 66
                56899************************9999****************9999877 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1      0.01        26      28      54 ..       5      31 ..       1      35 [. 0.87
   2 ?    7.2   0.0    0.0024       6.2      77     109 ..      37      69 ..      32      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
     DUF4200 28 alkqreeelekkeqeleedllkfdkfl 54
                +++q+++el  +++++ +  +++++f 
  EHT97711.1  5 TNQQAWAELTSAQNQIMDAGENLQQFF 31
                6899*************9999999995 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0024
     DUF4200  77 ekeaeikklkaeietlkseiekleekleeykkY 109
                 +  ae + l ++i+++++++e  ++kl+ ++ Y
  EHT97711.1  37 DNSAEGAMLGDQITEIRQQLEDVKRKLRTLSCY 69 
                 66788889999***************9999888 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.5    0.0001      0.26      10      70 ..       4      61 ..       1      67 [. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
        FlxA 10 ssssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqq 70
                 ++++  +++ s q+Qi ++ + L++   +  lt +  ++   ++  QI+ +++Q++ +++
  EHT97711.1  4 ITNQQAWAELTSAQNQIMDAGENLQQFFCQ--LTGD-NSAEGAMLGDQITEIRQQLEDVKR 61
                578888889999999999999999999999..4444.446667777777777777765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 553.45
//
Query:       EHT97712.1  [L=175]
Description: serine acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-07   28.8  14.6    1.2e-05   25.0   6.6    3.4  3  Hexapep_2   Hexapeptide repeat of succinyl-transferase
      2e-06   27.3  16.3      0.031   14.0   0.6    4.1  4  Hexapep     Bacterial transferase hexapeptide (six repeats)
  ------ inclusion threshold ------
       0.14   11.0   0.3       0.26   10.2   0.3    1.3  1  Fucokinase  L-fucokinase


Domain annotation for each model (and alignments):
>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.11   6.3e+02      27      32 ..      77      82 ..      59      84 .. 0.71
   2 !    7.0   0.0   0.00079       4.7       3      20 ..      87     104 ..      86     106 .. 0.86
   3 !   25.0   6.6   1.9e-09   1.2e-05       2      32 ..     110     143 ..     109     144 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.11
                -TT-EE CS
   Hexapep_2 27 gaGvvi 32
                ++Gvvi
  EHT97712.1 77 ENGVVI 82
                577777 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00079
                 EE-TT-EE-TT-EESEEE CS
   Hexapep_2   3 iIGdnCliGanagiGvsl 20 
                 +IG+n  i+ n++iG +l
  EHT97712.1  87 RIGENFQIHQNCTIGAKL 104
                 699999999999999765 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 1.9e-09
                 EEE-TT-EE-TT-E.ES..EEE-TT-EE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanag.iG..vslGdncvvgaGvvi 32 
                 ++IGdn+ iGa ++ iG   ++Gd++++gaG  +
  EHT97712.1 110 IRIGDNVTIGAHCClIGldMNIGDDVTIGAGTLV 143
                 79**********99897669***********865 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.06   3.6e+02      18      34 ..      58      74 ..      57      76 .. 0.72
   2 !   14.0   0.6   5.1e-06     0.031       4      30 ..      76     102 ..      73     103 .. 0.92
   3 !   10.7   1.7   5.8e-05      0.35      21      34 ..     111     124 ..     108     126 .. 0.78
   4 !   10.2   0.3   8.2e-05      0.49      22      34 ..     131     143 ..     130     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.06
                TTEEE-TTEEEETTEEE CS
     Hexapep 18 gnVkIGdnvkIgagvvi 34
                +nV+I  ++ Ig+g +i
  EHT97712.1 58 HNVEIQLGAEIGPGLRI 74
                77787778888887666 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.1e-06
                 EETTEEE-TTEEEETTEEE-TTEEEET CS
     Hexapep   4 IGsnvlIgpfaviggnVkIGdnvkIga 30 
                  +++v+I   + ig+n +I+ n++Iga
  EHT97712.1  76 HENGVVISRLCRIGENFQIHQNCTIGA 102
                 6899**********************8 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 5.8e-05
                 EE-TTEEEETTEEE CS
     Hexapep  21 kIGdnvkIgagvvi 34 
                  IGdnv+Iga++ +
  EHT97712.1 111 RIGDNVTIGAHCCL 124
                 69999999998866 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 8.2e-05
                 E-TTEEEETTEEE CS
     Hexapep  22 IGdnvkIgagvvi 34 
                 IGd+v+Igag+ +
  EHT97712.1 131 IGDDVTIGAGTLV 143
                 99*******9987 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   4.3e-05      0.26     293     344 ..      82     135 ..      51     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.3e-05
  Fucokinase 293 ie.hsslkgnvsigsnsivsglelessee.....slelpddtilqtlslklskekeyv 344
                 i   +++++n++i++n+ + g +l++        ++++  +++l +l ++ ++    v
  EHT97712.1  82 ISrLCRIGENFQIHQNCTI-GAKLDKTGVirigdNVTIGAHCCLIGLDMNIGDD---V 135
                 3235888899999999998.8888865447888888888888888888877663...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1346.10
//
Query:       EHT97713.1  [L=129]
Description: hypothetical protein CKS_5574 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-08   32.2   0.3    2.4e-07   30.6   0.1    1.9  2  DUF905    Bacterial protein of unknown function (DUF905)
  ------ inclusion threshold ------
      0.044   14.3   0.1       0.15   12.5   0.1    1.8  2  UN_NPL4   Nuclear pore localisation protein NPL4


Domain annotation for each model (and alignments):
>> DUF905  Bacterial protein of unknown function (DUF905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   2.7e-11   2.4e-07      37      67 ..      34      63 ..      28      66 .. 0.91
   2 ?   -1.0   0.0       0.2   1.8e+03      41      48 ..     106     113 ..      68     121 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.7e-11
                EE-SS--EEEEEESSSTTHHHHHHHHHTTTT CS
      DUF905 37 vrdaeGemvWraWnfepdaeeglnryiessG 67
                vr+ +G++vWraW fe + ++ l ry++++ 
  EHT97713.1 34 VRH-NGHLVWRAWEFEEGFADSLERYLKEFA 63
                899.***********************9876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.2
                 S--EEEEE CS
      DUF905  41 eGemvWra 48 
                  Gem+ r 
  EHT97713.1 106 LGEMIRRI 113
                 36666665 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.25   2.2e+03      36      66 ..      31      61 ..      25      67 .. 0.69
   2 ?   12.5   0.1   1.7e-05      0.15      24      61 ..      67     103 ..      61     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.25
                HSS-STTT-EEESSTTCGCCCSSSSSSCCCT CS
     UN_NPL4 36 elkfsengfslylernkttelvssssksvke 66
                ++++ +ng  +++  ++++    s ++ +ke
  EHT97713.1 31 QIEVRHNGHLVWRAWEFEEGFADSLERYLKE 61
                6777888888877777776666666666665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
                 SBHHHHHHHHHHHSS-STTT-EEESSTTCGCCCSSSSS CS
     UN_NPL4  24 stlktllekvaeelkfsengfslylernkttelvssss 61 
                  t ++  ek+++++ ++++ f+ ++++  +++l s  s
  EHT97713.1  67 DTRADVVEKIKKQIAINNEAFAASRDSAEQERL-SYAS 103
                 6788999*************************9.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1061.46
//
Query:       EHT97714.1  [L=95]
Description: hypothetical protein CKS_5575 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.034   13.6   0.0      0.036   13.5   0.0    1.0  1  DUF1571   Protein of unknown function (DUF1571)


Domain annotation for each model (and alignments):
>> DUF1571  Protein of unknown function (DUF1571)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-06     0.036     119     175 ..      32      88 ..      15      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-06
     DUF1571 119 elkreerldgrrvtalevehpskeeqvefskaelllDeelklpirveaydwPaaedd 175
                 el+r++++++r++tal +++  ++    +   +++lD e++ + +++ ++ P+++  
  EHT97714.1  32 ELYRHHHSEDRHITALALVKARRAIRAAAAEWQVVLDAEKRHVTQIREWNAPSNRRG 88 
                 67889999*******************************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 800.66
//
Query:       EHT97715.1  [L=126]
Description: hypothetical protein CKS_5576 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 947.35
//
Query:       EHT97716.1  [L=282]
Description: DNA adenine-methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-31  109.3   0.0    1.5e-30  106.7   0.0    1.9  1  N6_N4_Mtase    DNA methylase
    0.00097   19.3   7.3     0.0011   19.1   4.4    2.6  2  HALZ           Homeobox associated leucine zipper
     0.0024   16.1   0.0     0.0035   15.6   0.0    1.2  1  HOOK           HOOK protein
  ------ inclusion threshold ------
      0.013   15.5   6.2      0.045   13.8   6.2    1.9  1  Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
       0.15   11.8   2.0        1.5    8.6   0.0    2.4  2  DivIC          Septum formation initiator
       0.46    9.8   2.2       0.76    9.1   0.8    1.6  1  DUF4407        Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   4.9e-34   1.5e-30      76     227 ..      19     267 ..       1     272 [. 0.73

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 4.9e-34
                  EEEEEEEEEEESS.STTTSTCC...S-B--EEEEEEEESSTT-....................................................... CS
  N6_N4_Mtase  76 ffllnvivwkkpn.smpesnkd...rltsthEyilvfsknkkyl...................................................... 115
                  +++ln+i+w+kp+  +++snk+   ++ +t+E +++    +++                                                       
   EHT97716.1  19 LNVLNHIIWAKPSgTWGRSNKEslrQYFPTTERVIFAEHYGAEStasgasgyaakceelrkqtfkplidyfataraalgvsakeinqatgthmcshwf 116
                  66888888888864555555556663333444444433322222344444444444444555555555555555555555555555556666666666 PP

                  ...............................................---GGGSSBSS-HHHHHHHHHH.CHHHCC-B--BSEEE-SCCCTTSTTS-C CS
  N6_N4_Mtase 116 ..............................................lkfnldaikvpyeekdklekrga.ytskkkgkkiediWdlseiqsnekkskg 166
                                                                lk+n+d ++++y++ ++++++ + ++  +k ++++d+W  + +q++++k   
   EHT97716.1 117 sesqwqlpkrdqyeklqelfarkaqekgeaarlekthdglqteydaLKRNYDGLRLEYDDLRARYEELRrPFAVTKMVPFTDVWSYPPVQYYAGK--- 211
                  6666666888888888888888888888999**********************************999899*************66666666666... PP

                  HH----SS---HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHH CS
  N6_N4_Mtase 167 dtkkkHpaqkPvallerlIklstkkgdivlDpFaGSGtTavaakelgrkfiGieieeeyve 227
                       Hp++kP+a++e++I++s+++gd+v+D+F+GSG+T++aa++lgr++iG+e e   +e
   EHT97716.1 212 -----HPCEKPAAMMEDIINASSRPGDLVADFFMGSGSTIKAALKLGRRAIGVELESDTFE 267
                  .....*************************************************9987766 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   5.3e+03      12      18 ..     127     133 ..     126     137 .. 0.70
   2 !   19.1   4.4   3.7e-07    0.0011       5      31 ..     158     184 ..     148     186 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
        HALZ  12 asYdaLk 18 
                  +Y++L+
  EHT97716.1 127 DQYEKLQ 133
                 6788876 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 3.7e-07
        HALZ   5 rDYdvLKasYdaLksdydsLkkenekL 31 
                  +Yd+LK++Yd L+++yd L++  e+L
  EHT97716.1 158 TEYDALKRNYDGLRLEYDDLRARYEEL 184
                 467777777777777777777655555 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-06    0.0035     365     422 ..     131     188 ..     117     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-06
        HOOK 365 qvqelhkklseeskkadklefelkkleeklealqkekerllaerdaLketneELkcaq 422
                 ++qel ++  +e+  a +le     l++ ++al+++ + l  e d L+  +eEL+   
  EHT97716.1 131 KLQELFARKAQEKGEAARLEKTHDGLQTEYDALKRNYDGLRLEYDDLRARYEELRRPF 188
                 79****************************************************9755 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.2   1.5e-05     0.045       2      41 ..     128     184 ..     127     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
  Bap31_Bap29_C   2 eiekLkkeLkkkk.................kDlealKkQaeglakEYDrLadehskl 41 
                    + ekL++  ++k                   +++alK+  +gl  EYD+L   +++l
     EHT97716.1 128 QYEKLQELFARKAqekgeaarlekthdglqTEYDALKRNYDGLRLEYDDLRARYEEL 184
                    67899998886666778888888899*************************999998 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.1     0.062   1.9e+02      28      53 ..     127     152 ..     119     157 .. 0.86
   2 ?    8.6   0.0   0.00051       1.5      22      59 ..     156     192 ..     151     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.062
                 HHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC  28 alqaelaklkaeneeLeaevkdLksd 53 
                 ++ ++l++l a++++ + e ++L+++
  EHT97716.1 127 DQYEKLQELFARKAQEKGEAARLEKT 152
                 688999**************999876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  22 lkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                 l+ e++al+++++ l+ e ++L a+ ++L+  + ++++
  EHT97716.1 156 LQTEYDALKRNYDGLRLEYDDLRARYEELR-RPFAVTK 192
                 678999***********************5.9998887 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00025      0.76     112     161 ..     135     186 ..     128     190 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
     DUF4407 112 laeeqqeeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalra 161
                 l++++++e+ e+ +  +++   l++e+++l+++ + l+ e+d ++ar+++lr+
  EHT97716.1 135 LFARKAQEKGEAARL-EKThdgLQTEYDALKRNYDGLRLEYDDLRARYEELRR 186
                 444544444444222.2223558888888888888888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1969.37
//
Query:       EHT97717.1  [L=74]
Description: lysis protein S [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-15   57.1   2.5    1.4e-15   57.0   2.5    1.1  1  Phage_holin_2_1  Bacteriophage P21 holin S


Domain annotation for each model (and alignments):
>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   2.5   7.7e-20   1.4e-15       4      58 ..       8      62 ..       2      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 7.7e-20
  Phage_holin_2_1  4 atgvsYgaSggsigywlkqlldklspeeWsaigvlgglvigllTyltnlYFKrke 58
                     a +++YgaS+gs g+w+ +l + ++p++W+aigv+g+l+++ lT+++n   K+ +
       EHT97717.1  8 ANVTAYGASTGSFGFWFYKLTTSMTPDQWAAIGVIGSLMFAGLTCVSNAVIKVWA 62
                     3568********************************************8777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 514.48
//
Query:       EHT97718.1  [L=157]
Description: phage lysozyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-19   70.0   0.0    2.7e-19   69.6   0.0    1.1  1  Phage_lysozyme  Phage lysozyme
  ------ inclusion threshold ------
       0.24   10.2   0.0        0.3    9.9   0.0    1.1  1  Pox_ATPase-GT   mRNA capping enzyme N-terminal, ATPase and gu


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0     3e-23   2.7e-19       1     107 [.      40     145 ..      40     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 3e-23
                     CEEEETTBCSSSCCTTHH-EHHHHHHHHHHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCHHHHHHHGGGSSE CS
  Phage_lysozyme   1 ywtigiGekgkdvsphkritkeeaagryekdlktaerkikqyikvkdfepnqqdalvslafnvGkgGkrkastllralnagdwkkacsairkslk 95 
                     +wt++ G +g+dv+++  +t+++++ ++ek l+ ++r +++ +kv  +++ ++  l+s+a+nvG  G+++ s+llr ln gd+ +ac+ +r++++
      EHT97718.1  40 VWTVCDGITGPDVKQGHHYTDAQCDVLLEKHLAPVKRAVDSAVKV-PLDDYTRASLYSFAYNVGT-GAFQRSSLLRHLNSGDTRQACNDMRQWVY 132
                     7*******************************************9.******************7.8**************************** PP

                     E.TCCCHHHHHHH CS
  Phage_lysozyme  96 a.GkelnglknRr 107
                       G+  +gl+ Rr
      EHT97718.1 133 VnGQRKRGLVYRR 145
                     **********998 PP

>> Pox_ATPase-GT  mRNA capping enzyme N-terminal, ATPase and guanylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.3e-05       0.3     137     162 ..      97     122 ..      77     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.3e-05
                    EEEEEEETT--S-HHHHHHHSTTS-- CS
  Pox_ATPase-GT 137 lKyflGsgaqakssLltalNdpkskp 162
                    + y++G+ga ++ssLl +lN   +++
     EHT97718.1  97 FAYNVGTGAFQRSSLLRHLNSGDTRQ 122
                    78******************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1071.88
//
Query:       EHT97719.1  [L=181]
Description: hypothetical protein CKS_5581 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.034   14.0   0.1       0.05   13.5   0.1    1.2  1  SurA_N_2  SurA N-terminal domain
      0.069   13.0   0.5       0.16   11.8   0.5    1.6  1  DUF2570   Protein of unknown function (DUF2570)


Domain annotation for each model (and alignments):
>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.6e-06      0.05      10      74 ..      12      80 ..       4      98 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-06
    SurA_N_2 10 gllviiiglallaFi..lgdlfgvgsy..lfssssnevaeVnGekIslqefqqaveearqqlqqqlgen 74
                +ll  +++l +laF   ++ +   g++  l+s+++ ++ +++G+  ++q f++     ++ + ++ +e+
  EHT97719.1 12 VLLLAFVALGFLAFHyhAKAVADAGKIsqLTSDNTLQASTIAGQALTFQTFNRLAASSQKHATKTASES 80
                3455558999999998866666655443378889******************99988888766654443 PP

>> DUF2570  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   1.7e-05      0.16      15      89 ..      28      95 ..       8     109 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
     DUF2570 15 gvwlwsqsqkidsLraenkaqaqlieeqqkanqrLteqLeqerqavekqqkianelkakveeekeevktilkqes 89
                 +     + ki +L  +n  qa++i+      q+Lt q   +r a    qk a +   + ee+  e +tilk+e+
  EHT97719.1 28 HAKAVADAGKISQLTSDNTLQASTIA-----GQALTFQT-FNRLAA-SSQKHATKTASESEEKTIEYRTILKKEA 95
                34445667899**************9.....55565542.344454.4566677777778888888899999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1291.37
//
Query:       EHT97720.1  [L=185]
Description: hypothetical protein CKS_5582 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.71    8.6   2.8       0.83    8.4   2.8    1.1  1  DLIC      Dynein light intermediate chain (DLIC)


Domain annotation for each model (and alignments):
>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.8   4.6e-05      0.83     336     432 ..      35     131 ..      25     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 4.6e-05
        DLIC 336 kqqsllakqpatatrgvesparsqsgsprttnrsapanvasvspqssvkkidpklkaaaaseGvlanffnsllskksGsPgsagagggaaagrgsnv 432
                 +q  +l++q a  ++++ +pa +q+++p +++ s p  v+s++p+  ++ +    +   +++ v   ++  +ls   G  g++g +++++++r  n 
  EHT97720.1  35 QQIAVLQQQNADLQQSCAAPAGTQAAAPAAQAASPPVVVGSAAPVVVQQPPTVIHERDGTGDLVTGMMLGHMLSNSGGGGGGGGYASNHTTTRIVNN 131
                 5667788888877888899999*********************987766655555566667888888999999998888888887777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1363.52
//
Query:       EHT97721.1  [L=140]
Description: hypothetical protein CKS_5583 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1105.62
//
Query:       EHT97722.1  [L=145]
Description: membrane glycoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1274  (0.0710581); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1081.55
//
Query:       EHT97723.1  [L=136]
Description: hypothetical protein CKS_5585 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1059.55
//
Query:       EHT97724.1  [L=301]
Description: hypothetical protein CKS_5586 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2113.68
//
Query:       EHT97725.1  [L=89]
Description: hypothetical protein CKS_5587 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 664.03
//
Query:       EHT97726.1  [L=83]
Description: hypothetical protein CKS_5588 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       179  (0.00998383); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 612.50
//
Query:       EHT97727.1  [L=213]
Description: hypothetical protein CKS_5589 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1580.68
//
Query:       EHT97728.1  [L=98]
Description: hypothetical protein CKS_5590 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 730.68
//
Query:       EHT97729.1  [L=68]
Description: hypothetical protein CKS_5591 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       155  (0.00864521); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 506.74
//
Query:       EHT97730.1  [L=109]
Description: hypothetical protein CKS_5592 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.18   11.5   0.0    1.1  1  MmcB-like  DNA repair protein MmcB-like


Domain annotation for each model (and alignments):
>> MmcB-like  DNA repair protein MmcB-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     1e-05      0.18      93     129 ..      25      61 ..       5      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1e-05
   MmcB-like  93 leilPedvGlivaDaygaellreapehklaaatrkal 129
                 + ++P  +G   +D+++a+++    +h+l+   r  +
  EHT97730.1  25 MSVFPATTGSAASDGITAHVMAGEIKHRLSKLIRVEV 61 
                 679**************************98887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 770.68
//
Query:       EHT97731.1  [L=91]
Description: DNA-directed RNA polymerase sigma subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 667.23
//
Query:       EHT97732.1  [L=659]
Description: putative phage terminase large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-164  548.8   0.0   1.6e-164  548.5   0.0    1.0  1  Terminase_GpA    Phage terminase large subunit (GpA)
  ------ inclusion threshold ------
       0.16   12.4   0.1       0.37   11.2   0.1    1.6  1  Lar_restr_allev  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  548.5   0.0  1.8e-168  1.6e-164       1     549 [.      45     599 ..      45     610 .. 0.94

  Alignments for each domain:
  == domain 1  score: 548.5 bits;  conditional E-value: 1.8e-168
  Terminase_GpA   1 vlssessaepgrwrtdrtPylreimdalsdreveevvfvkpaqvGkTelllnwigyvidndpapmlvvqptkdlarefskerldpliesspelrer 96 
                    +ls+e s+++gr+r+    y+ +imda++d++ve+++++k+a+vG+T++l+ +igy i++dp+p+l++qp++++a+++sk++++p+++++p l+e 
     EHT97732.1  45 MLSKETSSQTGRFRS--FRYQDGIMDAFTDPTVETISVMKSARVGYTKILDHVIGYYIAHDPSPILAIQPRETDAEDYSKTEIAPMLRDTPVLAEV 138
                    7999*********77..77***************************************************************************** PP

  Terminase_GpA  97 las..srrsdntllskrfrggm.llligansasnlrsksaryvvldevDaypenv.kgeGdpikLaekRtetFgsrrkilleStPtikgtsrieal 188
                     +    ++s++t+l+++f +g  l+l+gans+ ++r+++ r+++ devD yp++   +eGd i+L +kR e+F ++rki ++StPt+kg srie++
     EHT97732.1 139 TGGakAKDSNQTILKRTFSNGAnLTLVGANSPGGFRRITCRIILFDEVDGYPASGaGNEGDQIALGKKRSESF-WNRKIGIGSTPTVKGISRIEKS 233
                    *999888999999*****87653899*************************8875499***************.********************** PP

  Terminase_GpA 189 yeesdqrryyvpCphCgelqelsfer......lkwpege....aeekaryvCphcgslieehhkraalaaGrWvaeaparrskiagfhlnalyspf 274
                    +++sdqr+++vpCphCge+q+l++ +      +kw+++e     +e+a+y+C+h+g++i++     +l+ G+W+a++p   + +agfh++++ys f
     EHT97732.1 234 FNDSDQRYFFVPCPHCGEMQVLEWGDrtspygIKWDRDEegnsLPETAYYACRHNGCVIQHTSLPLMLEGGEWRATKP--FKGHAGFHVWTAYSLF 327
                    ************************999********888778899**********************************..**************** PP

  Terminase_GpA 275 ..qsweelaakfleakeaeakgdeekLkafvntdlgepweeege.aldaeelaeraedlergtvPagvlvltagVDvQadrlevevvgwGrggesw 367
                      ++w++l++++l       k+d+   ++f+nt+lg+p+e++ge al++++l+er e +    vP+gv++ltag+D+Q+ rlevev gwGr++esw
     EHT97732.1 328 pnAAWKKLVEEWLGV-----KDDPVMRQTFINTTLGLPYEDSGEkALSEKKLVERTEVF-GAEVPDGVALLTAGIDTQDGRLEVEVKGWGRNEESW 417
                    ***************.....9*********************666*************9.899********************************* PP

  Terminase_GpA 368 vidraviegdpaseetwaeldallertyrhasgaelkilavaiDsgggeTdevyafvrkrrrlarrvlaikGase..knaplvekpskekkskkgr 461
                    +i + viegd+++ e w++lda+l++ +r+a+g   +i+a++iDsgg++T++vy+f+++r   +rr++aikG+s    ++  v+ ++k       +
     EHT97732.1 418 SIAYDVIEGDMDTPEPWDRLDAYLKQVWRRADGRGFPIMAACIDSGGHHTQAVYTFAKERI--GRRIWAIKGESArnGKRSPVWPNQK-----PSK 506
                    ************************************************************8..**********994233344444444.....334 PP

  Terminase_GpA 462 tarrgvklllvgvdklKdeiaarlrre.....epgpgyvhfpddlpeeffeqLtaEelvtrykkGkekreWkkrrgarnEaLDlrvyalaaae 549
                    ++++  +  ++gv+++Kd i +rl ++     e  +gy+hfp+d + ++f qL+aE+ v++++ G + r W+ r+g++nEaLD+ vy++aa++
     EHT97732.1 507 RSKSAYRPIIIGVNAAKDAIRNRLHLDppapgERQAGYMHFPTDRDLHYFSQLLAERSVVKRSGGYPYRVWELRPGRANEALDCSVYNYAALH 599
                    55668999*******************998888899*******************************************************64 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.1e-05      0.37       5      34 ..     245     290 ..     242     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.1e-05
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigq..............cvyC.ad.C 34 
                      pCP+Cg+ +vle   r++  + +              + +C ++ C
       EHT97732.1 245 PCPHCGEMQVLEWGDRTSPYGIKwdrdeegnslpetaYYACrHNgC 290
                      9**********98888877544477777777777777777743366 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4648.54
//
Query:       EHT97733.1  [L=85]
Description: hypothetical protein CKS_5595 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-14   52.5   0.2    3.7e-14   52.4   0.2    1.1  1  gpW       gpW


Domain annotation for each model (and alignments):
>> gpW  gpW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.2   2.1e-18   3.7e-14       2      62 ..      16      80 ..      12      84 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.1e-18
                HCHHHHHHHHHHHHHHHCS-SEEEEEE....TTEEEEEEGGGHHHHHHHHHHHHHHTTST-SSXX CS
         gpW  2 tlqaeLaeAraAlhdLmiGkkvvtVqk....dgrrVeytaasvtdLkkYiaeLekqlgitkrRRg 62
                +lqa La+A+ Al +L +Gkk v+ ++    ++r+V+y ++sv d ++ i +L++ lgi +rRR+
  EHT97733.1 16 QLQALLAQAQSALIELQMGKKGVSFSYsqgdGNRSVTYQPTSVADVTSLIMQLQRALGIGGRRRR 80
                58999*************************999***************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 616.93
//
Query:       EHT97734.1  [L=546]
Description: putative phage portal protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-101  340.3   3.8   1.6e-101  340.0   3.8    1.1  1  Phage_portal_2  Phage portal protein, lambda family


Domain annotation for each model (and alignments):
>> Phage_portal_2  Phage portal protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.0   3.8  9.2e-106  1.6e-101       3     362 .]      42     419 ..      40     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: 340.0 bits;  conditional E-value: 9.2e-106
  Phage_portal_2   3 rrlagwrpssrsadadiraalatlraRardlvrnnpiaagavdtlvtnvVGtgirlqakpdaealg...........eadeelrraiealwrewa 86 
                      ++a+w+p+  s d++i+  ++++++R rd+ rn+++a+g v+++ +n+VG+ +r+  kpd+++l            +a  e++r + a wr wa
      EHT97734.1  42 DQMADWQPPLWSSDNEINIYRDRMVSRIRDMTRNDGWASGTVTRILDNAVGAVFRPIFKPDYRYLAqltgndgfnaeWAA-EYSRYMDAQWRTWA 135
                     68***************************************************************999999999997777.************** PP

  Phage_portal_2  87 e..kkecDatgrldfyglqrlalrsvlvdGEvfvllkwkerprrrlrrl.vplqlqllepdrldtdknvleegnrirqGvefdadgrpvaYwiyr 178
                     +   + cD ++++++ +++rla+r+ lvdG+++vl+ ++ ++    +++ +++ +q+++pdrl+++++   +  +ir+Gve+da+g+p+aY+i++
      EHT97734.1 136 DdeGRWCDRERKQTVSQMLRLAMRHKLVDGDSLVLMHYDMERLGY-GKAsFATMMQVIDPDRLSNPNQ-VYDMLDIRGGVEIDANGAPCAYHIRQ 228
                     *9999*****************************77777777765.4556*************99655.445599******************** PP

  Phage_portal_2 179 ehpgdalsaasseewvrvpae......evlhlfeperpgQvRGvpwlapvlerlrdldeyedaelvaakvaAlfaafikseepseeaeealgdpa 267
                      h gd++   ++++w+r+p+e       v+h f+ +r+gQ+RG++++apv++rl++l +y+++el  a+++A+f+afi+s++++ ++eealgd+ 
      EHT97734.1 229 AHVGDWFAGDKTMTWQRIPREtswgrpVVIHDFDHDRAGQHRGISIFAPVVQRLKMLIKYDQTELESAILNAMFGAFIQSPYDPAMVEEALGDGD 323
                     *******9999*********************************************************************************775 PP

  Phage_portal_2 268 gaaaeeedeegkadereiel.epGtiveLapGedvkfanparpganfeaFvkallraiAaglgvpyelltgDlsgvnYSsaRaallearrtvear 361
                     +  a++ed+ + +++r+i+l +++ +  L pGe+v+++n+arp +nf+ F  a lr+iAa +g++ +++t+D+s vnYSsaRaa+lea++t+ +r
      EHT97734.1 324 SLGAYQEDRIDFHKDRRISLnGGAGMSILFPGETVNTINAARPYSNFSVFQDAFLRNIAAQTGLSTQQITQDWSSVNYSSARAAMLEAWKTLTRR 418
                     55556666666555689***55555667****************************************************************998 PP

  Phage_portal_2 362 q 362
                     +
      EHT97734.1 419 R 419
                     7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4200.85
//
Query:       EHT97735.1  [L=284]
Description: Protein C serine peptidase S49 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-27   96.6   0.1      2e-27   96.0   0.1    1.2  1  Peptidase_S49  Peptidase family S49
    0.00013   21.9   0.0       0.01   15.7   0.0    2.1  2  CLP_protease   Clp protease


Domain annotation for each model (and alignments):
>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.1   2.3e-31     2e-27       6     146 ..     138     277 ..     134     283 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 2.3e-31
                    T--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHHHHHH CS
  Peptidase_S49   6 kkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyqqFvq 101
                     kPv+ +  + a S++Y +asaad+iv+  ++ vgs+Gvi ++ + ++ ++  g+ v++++ G  k   +++r+l++++re++q  +d++ + Fv+
     EHT97735.1 138 TKPVWSVLTESAYSAAYAIASAADRIVVPRTGGVGSVGVIVMHCDWTQKVKDDGLAVTIINYGDRKAESNPYRKLSDQAREAIQHDVDAMGELFVN 233
                    79********************************************************************************************** PP

                    HHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHH CS
  Peptidase_S49 102 tVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvddavae 146
                    tV++nR+ls + +  +++++ ++++++++lgL+de+ + d a + 
     EHT97735.1 234 TVSRNRGLSFKTIR-NTQAATFLAAEGVELGLADEVASPDAAFRD 277
                    ********999886.68*******************999998776 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-06      0.01      37      98 ..     100     162 ..      90     169 .. 0.79
   2 !    4.1   0.0    0.0041        37     131     180 ..     223     270 ..     206     272 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-06
                   HHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHS..SS-EEEEEEEEEETHHHHHHHTS-T CS
  CLP_protease  37 LllLeaedpdkdillyinspGGsvtaglaIydtmqyi..kpdvsticlGlaaSmgslllaagek 98 
                   L +L + d  k i+l i+spGG+v   + + d +     + +v  + +  a S++  +++a+++
    EHT97735.1 100 LTAL-TDDAVKGIMLDIDSPGGEVAGCFDLVDEIYRArgTKPVWSVLTESAYSAAYAIASAADR 162
                   4555.88999************************998333445556668999999999998864 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0041
                   HHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-S CS
  CLP_protease 131 ellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLidevie 180
                    ++ + e  +++++++ g s ++i+++ +  tf  a+e ve GL+dev +
    EHT97735.1 223 DVDAMGELFVNTVSRNRGLSFKTIRNT-QAATF-LAAEGVELGLADEVAS 270
                   566777778888888888888888754.44444.57899********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2143.60
//
Query:       EHT97736.1  [L=208]
Description: hypothetical protein CKS_5598 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-05   22.8  13.8    2.7e-05   22.6  13.8    1.1  1  Nop14          Nop14-like family
     0.0013   18.3  18.8     0.0014   18.1  18.8    1.1  1  SDA1           SDA1
     0.0021   17.5  16.9     0.0022   17.4  16.9    1.2  1  BUD22          BUD22
  ------ inclusion threshold ------
       0.71    8.9  18.0       0.82    8.7  18.0    1.1  1  TIMELESS_C     Timeless protein C terminal region
       0.77    9.3   2.3         10    5.7   0.2    2.5  2  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
        3.2    6.4   4.9        3.2    6.4   4.9    1.1  1  Presenilin     Presenilin


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6  13.8   9.1e-09   2.7e-05     339     491 ..      29     184 ..      13     207 .. 0.51

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.1e-09
       Nop14 339 glkataeeeeeededdfeedddlveseseeee...eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaaeekkekk..... 429
                 g    a e+++++e+ +++ddd+ + ++       +++++d+e +ed++++ ++eed+d+ s  +++ ++ +d+ +e   +++ +a e k   +     
  EHT97736.1  29 GR---A-EDDDREEEADDDDDDKPQGRKAR-GsraADDDDDDERAEDDDDDADAEEDDDKPSGRKAKGKKADDDGDEADAKARGRAIERK---Rcarif 119
                 11...1.11222222222222222222222.22445556666666666666678888888888888866666665444433333333332...133577 PP

       Nop14 430 .kkkkkseekakeelpytfp..cPesheellellekreisaedlptvvqRIralhhpsLaeeNKe 491
                  +k++  + + +++l++t +  + + +++l++        +       +R+ra ++ sL ++ K+
  EHT97736.1 120 gSKAAGIRPDMAASLAFTTSlsASAAIAQLEQAAAFGAPAQGGRMSLDDRMRAEQKHSLGPDAKK 184
                 78888888889999999977223444566666655433333344445556666666666666655 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1  18.8   4.8e-07    0.0014      81     181 ..      23     134 ..      10     193 .. 0.42

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.8e-07
        SDA1  81 eeekkekreeeeedsddeddeedwevesddds...eedsegg.widvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeek 175
                 e+ek++           edd++++e+++ddd+        g+   d ++d+e++e++d++ d ee++++++++++k ++++++     +e +++++  +
  EHT97736.1  23 EDEKARG--------RAEDDDREEEADDDDDDkpqGRKARGSrAADDDDDDERAEDDDDDADAEEDDDKPSGRKAKGKKADDD----GDEADAKARGRA 109
                 1111111........12222222222222222232222222212222223333333332222233333333333332222222....222222222222 PP

        SDA1 176 ekkkk.......................k 181
                                              
  EHT97736.1 110 ----IerkrcarifgskaagirpdmaasL 134
                 ....1222344555555555555444440 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  16.9   7.3e-07    0.0022     134     231 ..      10     102 ..       2     200 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.3e-07
       BUD22 134 llgiekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed......eekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasd 226
                 llgi++ k +k  ++++++k++ ++++++ ee e++d ++++    +      + +++++dd+e  e+d+dd+daee  +d++ + r+++  ++  ++d
  EHT97736.1  10 LLGIKP-KGAK--AEDEDEKARGRAEDDDREE-EADDDDDDKP---QgrkargSRAADDDDDDERAEDDDDDADAEE--DDDKPSGRKAKGKKA--DDD 97 
                 555555.1111..1111111111111111111.1111111111...1222222111111111111112222222222..122222222111111..112 PP

       BUD22 227 deded 231
                  +++d
  EHT97736.1  98 GDEAD 102
                 22222 PP

>> TIMELESS_C  Timeless protein C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  18.0   0.00028      0.82     452     542 ..      24     115 ..      13     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00028
                 ..........XXXXXXXXX...XX..................................................XXXXXXXXXXXXXXXXXXX CS
  TIMELESS_C 452 akkkrkiklgtnseeEeddialdeneedsrassgEledndqd..skdaaeaeddleiddnkalqrarekdeissdrdnaddgalprkkkdkre 542
                   k+r      + eeE+dd+  d++ +  +a+     d+d d    + ++ + d e dd+k+++r+ + ++ + d d+ad+ a  r  + kr 
  EHT97736.1  24 DEKARGRAEDDDREEEADDD-DDDKPQGRKARGSRAADDDDDdeRAEDDDDDADAEEDDDKPSGRKAKGKKADDDGDEADAKARGRAIERKRC 115
                 33333333355666777773.344455566776666666666323445556678999************************777776666665 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2    0.0033        10      22      40 ..      48      66 ..      47      69 .. 0.88
   2 ?    2.9   0.1     0.025        75      22      32 ..      84      94 ..      83     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0033
                   BT-TTSCTEEGSETTTTSS CS
  DNA_gyraseA_C 22 eqgRgakGvkgiklkegdk 40
                   +qgR+a+G ++ + +++d+
     EHT97736.1 48 PQGRKARGSRAADDDDDDE 66
                   69**********9999986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.025
                   BT-TTSCTEEG CS
  DNA_gyraseA_C 22 eqgRgakGvkg 32
                   ++gR+akG+k+
     EHT97736.1 84 PSGRKAKGKKA 94
                   589******97 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.9    0.0011       3.2     235     308 ..      21      97 ..       8     177 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0011
  Presenilin 235 seeeeeaekkkeeasesskeeeseeesseksaqsse...seeeseeesseaessaeesseekeseessesseeeeee 308
                 ++e+e+a+ ++e ++++++++++++++++ ++ + +   ++++++e++++++++a++++++++ + ++ + ++ +++
  EHT97736.1  21 EDEDEKARGRAEDDDREEEADDDDDDKPQGRKARGSraaDDDDDDERAEDDDDDADAEEDDDKPSGRKAKGKKADDD 97 
                 22223333333333333333333332222222222222222222222222222222222222222222211111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 1438.80
//
Query:       EHT97737.1  [L=225]
Description: hypothetical protein CKS_5599 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-10   39.2  21.2    1.3e-06   28.5  21.2    2.5  1  HDPD      Bacteriophage lambda head decoration protein D
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.11   12.3   0.0    1.4  1  SAP       SAP domain
       0.11   13.0   1.4          9    6.8   0.3    2.8  2  MG2       MG2 domain


Domain annotation for each model (and alignments):
>> HDPD  Bacteriophage lambda head decoration protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  21.2   2.2e-10   1.3e-06      13     105 ..      27     207 ..      20     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.2e-10
        HDPD  13 lseanghrsrekvtiaagaglllgtVLgkita.a................................................................. 45 
                 +++ +    ++ +tiaag  +  gt+Lg+++  +                                                                 
  EHT97737.1  27 IASHSPLPVTDDITIAAGHEYKRGTILGRQSLkSvaavaasgntgngtlavslgtaaevgaytltatsatsftlkdptgtavgtvtagtafdsnqldlt 125
                 55555556789******************99852668999*********************************************************** PP

        HDPD  46 ......................gklvpldpaatdGsqtAaaillypvdataadveavaiardaevngaaLvwpasvtd.aqka 105
                                       g++v +  +atdGsq + a+l+++vd ta++v+a  +  +  vn +++++++s+t  + ka
  EHT97737.1 126 vtagatafvagdvftitvsaaaGTYVLSVRTATDGSQYPSAVLIDDVDSTAGAVNAGGYF-QVAVNVNRITYDDSWTVdDLKA 207
                 ****************************************************99999999.599*************977776 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11       3      17 ..     199     213 ..     198     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                 T--HHHHHHHHHHTT CS
         SAP   3 kltVaeLKeeLkkrG 17 
                 ++tV++LK+eL+  G
  EHT97737.1 199 SWTVDDLKAELRGKG 213
                 8***********877 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.011        64      54      80 ..      66      92 ..      51     104 .. 0.77
   2 ?    6.8   0.3    0.0015         9      51      90 ..     124     164 ..      92     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.011
                EE-CTTEEEEEEE--TT--SEEEEEEE CS
         MG2 54 atdetggaesefalpeaaklGeysvel 80
                a+ +tg     + l +aa+ G y++++
  EHT97737.1 66 ASGNTGNGTLAVSLGTAAEVGAYTLTA 92
                66777778899999***********99 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
                 EEEEE-CTTE.EEEEEE--TT--SEEEEEEEEECSTTT-EE CS
         MG2  51 lplatdetgg.aesefalpeaaklGeysvelsadsaeesls 90 
                 l++++ +t + a   f++  +a  G+y +++++ ++++++ 
  EHT97737.1 124 LTVTAGATAFvAGDVFTITVSAAAGTYVLSVRTATDGSQYP 164
                 33455555552555699999********9997777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1827.43
//
Query:       EHT97738.1  [L=352]
Description: putative phage capsid protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-66  222.3   0.0      1e-65  222.2   0.0    1.0  1  Phage_cap_E  Phage major capsid protein E


Domain annotation for each model (and alignments):
>> Phage_cap_E  Phage major capsid protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.0   5.6e-70     1e-65       1     333 []       9     350 ..       9     350 .. 0.95

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 5.6e-70
  Phage_cap_E   1 FstasLtaainelppvptflgdllFpee.kvttttvevekkkgklklapfvsrgapgevveregrstrsfeppyikekdvitadelqnlrafges... 94 
                  F+ta+L+ ++ +l   + +++d++Fp+  + ++++v+++++ gk+++apfvs+ ++g++ve ++++t++f+p+yik+k++ +  ++++ r++ge+   
   EHT97738.1   9 FTTATLAGVVPNLMTSQNWMLDRFFPNIvESQSEEVAIDVDVGKRRMAPFVSPLVQGKLVESRRIQTNTFKPAYIKDKRAPDLRKPIR-RQIGERigg 105
                  9***************************************************************************************.*****4455 PP

  Phage_cap_E  95 ...paervqeevarkladlrdkidrteEwmraqaLkggkldadGetlydlfvdFgvtakhkiefdlgtakWd.ad....vradpledlrkwednlakg 184
                      aer++ +++ ++ad+ d ++r+ Ewm ++aL  g+++++G+++++ ++dFg++++++i + +g++kW  +      + +p++d+++w++++ k+
   EHT97738.1 106 sftGAERAMLNIQFEMADQIDILNRRMEWMGCSALTSGTVTIKGDGFPTTVIDFGRDPELTI-THTGSDKWPtSVasgaKNTQPTDDIDEWQTLILKK 202
                  677***********************************************************.********9733334345567************** PP

  Phage_cap_E 185 ggstpvralmgkkffdalikhkkvkeaydntqageagqleaaendlrdgftfgG....itfeeydgtyvd.gdgtskpfipddevllfptgvadgftt 277
                  +g++ ++++++++ ++a+  +++ + a+   +    g++++  ++ ++g+ ++G    ++++ y+++yvd ++ +++p++pd+ v+++ + +  g+++
   EHT97738.1 203 SGAKVTDIIFTTSSWKAFKLDTSLEGAIIFPNMNPSGNVINPGPQIENGAIYKGrwgqYDLWLYNDWYVDpDTDEEEPMLPDGCVIMTGA-ALMGTRA 299
                  ***************************99998888888888889***************************999***************6.5****** PP

  Phage_cap_E 278 ygapaeyyedvnagtvglplyakkweeeddpsgikleaqsnpLpvptrpdalvkat 333
                  +g +     d+  ++ +l++ +k+w+e+d p++  l +qs+p+++p+r++a + at
   EHT97738.1 300 FGMI----LDPAFSYGALAYAPKTWIEQD-PAQQILLMQSAPIVIPSRVNASLCAT 350
                  ****....889999***************.********************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2589.34
//
Query:       EHT97739.1  [L=121]
Description: hypothetical protein CKS_5601 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.015   15.0   1.9      0.035   13.8   0.5    2.3  2  DUF348          G5-linked-Ubiquitin-like domain
      0.087   13.8   1.5       0.19   12.7   0.2    1.9  2  HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-compon


Domain annotation for each model (and alignments):
>> DUF348  G5-linked-Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18   1.6e+03       2       9 ..      62      69 ..      49      72 .. 0.71
   2 ?   13.8   0.5   3.9e-06     0.035       8      34 ..      88     114 ..      88     117 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
                EEEETTEE CS
      DUF348  2 tltvDGkt 9 
                tl+ DGkt
  EHT97739.1 62 TLKCDGKT 69
                55667776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.9e-06
                 EEEEE----SSHHHHHHHTT----TT- CS
      DUF348   8 ktvtvrTaadTVgdlLeeagitlgeqD 34 
                 k+++v Ta+   +d+L++ g+t+  qD
  EHT97739.1  88 KRRVVVTAEQALADALAQEGVTIAVQD 114
                 6899*******************9999 PP

>> HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.1e-05      0.19      19      69 ..       5      58 ..       2      76 .. 0.79
   2 ?    0.2   0.1      0.17   1.5e+03       8      30 ..      84     107 ..      77     116 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
  HK97-gp10_like 19 ikkalkkaAkevldkakkrtpsvdtggdLrdsitv....qg.kvkkkggeyrvevg 69
                    +++a++kaA+ + d++ + tp+  t+++ +++ +v    ++ + ++++g++ v+v 
      EHT97739.1  5 KNAAAEKAAENATDALNDETPA--TTDETEENAAVvdsgANlTENEDDGTVAVVVL 58
                    5789*****************5..87*********997744355555566776665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
  HK97-gp10_like   8 eklserevekaikkalk.kaAkev 30 
                     ++l +r+v  ++++al  + A+e 
      EHT97739.1  84 DRLVKRRVVVTAEQALAdALAQEG 107
                     565555677777666653556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 946.50
//
Query:       EHT97740.1  [L=110]
Description: hypothetical protein CKS_5602 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 832.89
//
Query:       EHT97741.1  [L=181]
Description: hypothetical protein CKS_5603 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   12.8   0.1       0.12   12.1   0.1    1.4  1  Ten1_2    Telomere-capping, CST complex subunit


Domain annotation for each model (and alignments):
>> Ten1_2  Telomere-capping, CST complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.7e-06      0.12      16      65 ..      58     108 ..      50     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-06
      Ten1_2  16 gslkegssvRtlGrLksydvatsratl.takeeskqaelkvetdlvepfea 65 
                 +++   ++vR++Gr++ +d++ ++  +  a+e+ +q +l+ve  ++++ e 
  EHT97741.1  58 PQFTSVTTVRITGRVEAFDTEDAEIGAmLAEEACEQLRLQVEQGVINSYEL 108
                 56677789************9876433269999999999999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1413.83
//
Query:       EHT97742.1  [L=90]
Description: hypothetical protein CKS_5604 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   69.4   0.3    2.2e-19   68.9   0.3    1.2  1  DUF2635   Protein of unknown function (DUF2635)


Domain annotation for each model (and alignments):
>> DUF2635  Protein of unknown function (DUF2635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.3   1.2e-23   2.2e-19       2      44 ..       4      46 ..       3      47 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.2e-23
     DUF2635  2 kPkaGlkVRdPetgelLpaeGeevprtlyWlRRlkdGDvvevk 44
                kP +G+ VRdP++g lLpaeG+ev+ +++W+RR +dGDv+ev+
  EHT97742.1  4 KPVDGRAVRDPVKGTLLPAEGAEVEMSTFWRRRFRDGDVEEVT 46
                9****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 780.14
//
Query:       EHT97743.1  [L=497]
Description: Bacteriophage Mu tail sheath protein (GpL) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-18   65.8   1.6    1.7e-17   63.8   0.0    2.3  2  Phage_sheath_1   Phage tail sheath protein subtilisin-like do
      2e-11   43.7   0.0    4.1e-11   42.8   0.0    1.5  1  Phage_sheath_1C  Phage tail sheath C-terminal domain
     0.0076   16.7   4.7       0.07   13.6   4.5    2.8  2  Phage_sheath_1N  Phage tail sheath protein beta-sandwich doma


Domain annotation for each model (and alignments):
>> Phage_sheath_1  Phage tail sheath protein subtilisin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.9     0.083     5e+02      75     157 ..      94     171 ..      20     175 .. 0.80
   2 !   63.8   0.0   2.9e-21   1.7e-17       2     168 .]     208     370 ..     207     370 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.083
                     CTTTTEEEE--EEEETTSSEEEHHHHHHHHHHHHHHSTTT--STT....-B-TTEEEESSS--HHH...HHHHHHTTEB-EEEETT CS
  Phage_sheath_1  75 adnegiinvsstyaaldgpeitqypaaawvAGlcAradveqswtarpsngevkgaldlaieltqee...rdllleaGintltvdag 157
                     ad ++++  s+t a++ +p      aa+ vA ++ ++ ++ s+t+   ++   +a dla+ ++ ++    ++  +aG++tlt + +
      EHT97743.1  94 ADGDDLVAASGTIAITTPP-----TAAGTVALYIGGTRIQISVTS-TDTVS-VIASDLATAINAATalpLTASASAGVITLTAK-N 171
                     5556666666666666665.....578999999999999999999.33333.48899999988888888999999999999988.4 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 2.9e-21
                     T--HHHHHHHHHHGTTS--SEEE-GG.GTCS-HHHHHHHHHHHHHHHHHCH-SSEEEEES-HHHHSSS.HHHHHCTTTTEEEE--EEEETTSSEE CS
  Phage_sheath_1   2 kvtnedylaaldalegekfnlliapg.ddaednevatevqafakrsrenegldaiaviappgtttieqaaarakadnegiinvsstyaaldgpei 95 
                     + + + + +al++l+++ f+ +i p+ d+++ n+v++ + + + r+++  +l+++ +    gt  + +aa++a+     +    s  +++d+p  
      EHT97743.1 208 GTGSPSLDDALANLGDKTFDFIINPYtDTTSLNAVKSLLSDNTGRWSYSSQLYGHSLGVLFGTYGELTAAGEAR-----NNQHESIIGVYDSPST 297
                     56789999******************9999********************************************.....7777888888888744 PP

                     EHHHHHHHHHHHHHH.STTT--STT.....-B-TTEEEESSS..--HHHHHHHHHTTEB-EEEETTTEEEES--B-S CS
  Phage_sheath_1  96 tqypaaawvAGlcAr.adveqswtarp.sngevkgaldlaie..ltqeerdllleaGintltvdagdgvrvegditt 168
                         +++w+A+     a + ++++ rp ++++v+g+l ++    +  +er++ll++Gi+t tv++++ v +e  itt
      EHT97743.1 298 ----PWVWAAACYGAmATSLRNDPGRPvQTLTVSGVLAPPLAsrFEMTERNNLLYSGISTTTVSDDGTVTLENVITT 370
                     ....888888877666*********************9888888********************9999999999987 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   6.8e-15   4.1e-11       1     103 [.     378     491 ..     378     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 6.8e-15
                      SS-GGGGBHHHHHHHHHHHHHHHHHHHHHHHHHTTTSH..........HHHHHHHHHHHHHHHHHHHTTSB-S--S.TTSEEEECSSSSTTEEE CS
  Phage_sheath_1C   1 dkdedfkkievirtldllrddirstfkkkylgkklnnd..........dgralvksalnaylkelqregaienfdn.ksdleveakntdkdrlv 83 
                      d+d ++++ie+  +l ++ + +rs +++ky++ kl+            +++++++++l+a + +l+ +g +++ +   s l ve+++++++r+ 
       EHT97743.1 378 DADDSYLEIETMFLLMYVTRYLRSVVTSKYARMKLAASgtkfasgaaiVTPNIIRAELIAQYSTLETNGFVQDSTGfASGLIVEQNSSNPNRVD 471
                      6899********************************66677999999*********************************************** PP

                      EEEEE-BSSSSS-EEEEEEE CS
  Phage_sheath_1C  84 vkinvkpvnsmeklyftiev 103
                      v +   ++n+m+ +++  ++
       EHT97743.1 472 VLWPGVLINQMRVFALLNQF 491
                      ***************99887 PP

>> Phage_sheath_1N  Phage tail sheath protein beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   4.5   1.2e-05      0.07       3      94 ..     101     180 ..      99     209 .. 0.65
   2 ?    1.6   0.1     0.064   3.8e+02       7      32 ..     153     181 ..     146     230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                      -SCEEEEE.TTSS.TEEESSSSGGGGGEEEEEEEHSSSTTSEEEEEEETTEEEEEEEEESSCCCTT-..BSSEEEEHHTTEESECEEEESCE.. CS
  Phage_sheath_1N   3 aatatltltstaseaigakypgerGnritvevtsgaddsnqfdvivregdrivdaqilvtgekdvvg..niavaaklvasgnapdlpatAssw. 93 
                      aa++t+ +t   +  +g+++++++G ri+++vts ++      v+v  +d                   n+a a  l as++a  ++ tA+++ 
       EHT97743.1 101 AASGTIAITTPPTA-AGTVALYIGGTRIQISVTSTDT------VSVIASDL--------------ATaiNAATALPLTASASAGVITLTAKNKg 173
                      78999999988888.**********************......33332222..............22224444555555555555666666655 PP

                      ......T CS
  Phage_sheath_1N  94 ......g 94 
                            +
       EHT97743.1 174 algndiD 180
                      5555550 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.064
                      EEEE.TTSS..T..EEESSSSGGGGGEEE CS
  Phage_sheath_1N   7 tltltstase.a..igakypgerGnritv 32 
                      +l lt++as     ++ak+ g  Gn+i +
       EHT97743.1 153 ALPLTASASAgVitLTAKNKGALGNDIDI 181
                      34455555443266777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4189.09
//
Query:       EHT97744.1  [L=122]
Description: hypothetical protein CKS_5606 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-40  136.3   2.4    4.5e-40  136.2   2.4    1.0  1  Tail_tube    Phage tail tube protein
     0.0087   15.8   0.1       0.01   15.6   0.1    1.2  1  EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus


Domain annotation for each model (and alignments):
>> Tail_tube  Phage tail tube protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   2.4     5e-44   4.5e-40       2     116 ..       6     120 ..       5     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.2 bits;  conditional E-value: 5e-44
   Tail_tube   2 nkiaGtayikvdGkelevkggaelnpggvkRetvvggdgVvgysekpkapsieatiadeedldleelkaltnatvtfeldnGktyvlsgAwlvdepelk 100
                 n++aGta+++vdG  ++v+g +++ ++++kRet++g+d+V+gy+ekp+a++i+++++d+++++++++++ tn+tvt+el+nGkt++ sg+w+v+ +e++
  EHT97744.1   6 NRLAGTATVTVDGLSIMVAGNFKYAVAKNKRETLTGMDRVHGYKEKPTAGFISCQVRDSGGTTVSDFNDQTNVTVTAELANGKTIIGSGMWTVEAQEVD 104
                 799************************************************************************************************ PP

   Tail_tube 101 skdGtielkfegkeve 116
                 s+d+ +++++e+++v+
  EHT97744.1 105 SEDAVFDVRWESDSVQ 120
                 *************996 PP

>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.2e-06      0.01      27      73 ..      21      68 ..      11      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-06
  EIIBC-GUT_N 27 vsvtggeipevve.kiaeltGaeavdgFktsvpeeeiavvvidCGGtl 73
                 ++v+g+ + +v++ k + ltG++ v g+k++     i + v d GGt 
   EHT97744.1 21 IMVAGNFKYAVAKnKRETLTGMDRVHGYKEKPTAGFISCQVRDSGGTT 68
                 567788888888625677****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 930.00
//
Query:       EHT97745.1  [L=180]
Description: hypothetical protein CKS_5607 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-11   44.8   0.0    9.5e-07   28.9   0.0    2.1  2  Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41


Domain annotation for each model (and alignments):
>> Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41 or 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.9e-06     0.034      20      81 ..      18      75 ..      17      77 .. 0.79
   2 !   28.9   0.0   5.3e-11   9.5e-07       2      82 ..      90     168 ..      89     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-06
  Phage_TAC_7 20 LReptvkDlraaqlvkegkpdadllmgaeialiarlsglppedlekLdlaDlarlqervagf 81
                 LRep   +++ +  +  +k++a    +a  +li++++g  p+ l++L+l+ ++r q+++ +f
   EHT97745.1 18 LREPFYHEVELFY-AEAKKTNAH---EAMGVLIGKITGKAPASLDNLPLRVVRRGQAFLLHF 75
                 7888888888888.333334333...3779*********************99999988887 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 5.3e-11
  Phage_TAC_7   2 itLkkP.ievdGet.yteltLReptvkDlraaqlvkegkpdadllmgaeialiarlsglppedlekLdlaDlarlqervagfl 82 
                  i+L+k  ++ +G++  +++ LRep+ ++++a  +  e+k++a     a+  l + lsg+ +++l+kL++  ++++++++ gfl
   EHT97745.1  90 IPLDKQiTSLNGQEaWESVPLREPSFAEFKAYYAELEAKDAAT----ALLSLMSALSGVNRQALRKLPITKFREAEKYLVGFL 168
                  7788887777996626*****************7777777777....99********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1343.51
//
Query:       EHT97746.1  [L=614]
Description: hypothetical protein CKS_5609 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   12.2   0.1        3.9    7.3   0.0    2.7  2  ubiquitin  Ubiquitin family
       0.22    9.7   0.1        0.8    7.8   0.0    1.9  2  COG6       Conserved oligomeric complex COG6


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00044       3.9      27      56 ..     222     251 ..     218     262 .. 0.89
   2 ?    1.7   0.0     0.024   2.2e+02      35      54 ..     449     469 ..     443     475 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00044
                 HHHHHHTSSGGGEEEEETTEEE-TTSBHGG CS
   ubiquitin  27 kiaekegipaeqqrLiysGkvLedertlee 56 
                  +a+  g+ a+ ++L+ +Gk+L+d++t ++
  EHT97746.1 222 TVADALGLDADGLQLLREGKRLKDNLTKSD 251
                 67888999******************9887 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.024
                 SGGGE.EEEETTEEE-TTSBH CS
   ubiquitin  35 paeqq.rLiysGkvLedertl 54 
                 +a++q +L+ysGk  + +++l
  EHT97746.1 449 AADRQlQLYYSGKSANTDHPL 469
                 577777******976666666 PP

>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   8.9e-05       0.8      39      88 ..      12      61 ..       6      75 .. 0.92
   2 ?   -1.7   0.1     0.071   6.4e+02      54      86 ..     178     210 ..     167     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 8.9e-05
        COG6 39 fqpvaeqLkriesdveklnelcdemkkklssakeetsdlleeaeeLkeek 88
                 ++v ++Lkri+++v +l+   d++++ l+   +et+d l++++++ e++
  EHT97746.1 12 DDQVSDALKRINDEVRNLQPGLDKTTDGLKLGGQETNDGLSQINRMFEQL 61
                57999****************************************99986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.071
        COG6  54 eklnelcdemkkklssakeetsdlleeaeeLke 86 
                 ++  +++++++ ++ ++ + t+++le++++L  
  EHT97746.1 178 NEVLAVMNQVHAQIVKNADGTANVLETVKQLAD 210
                 455567888899999999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4504.24
//
Query:       EHT97747.1  [L=468]
Description: phage tail/DNA circulation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-33  115.3   0.0    2.6e-33  114.3   0.0    1.6  1  DNA_circ_N  DNA circularisation protein N-terminus
  ------ inclusion threshold ------
      0.076   13.3   0.5       0.65   10.4   0.1    2.4  2  HalX        HalX domain


Domain annotation for each model (and alignments):
>> DNA_circ_N  DNA circularisation protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   2.8e-37   2.6e-33       2      88 .]      25     118 ..      24     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 2.8e-37
  DNA_circ_N   2 lrkAsFrGvpFeveeaedsfgrrlavheYPkrdkpdvedlGrkareirleavlvgdd.......ylaqrdaLiealekpgageLvhPtlGelkv 88 
                 l+ AsFrGvpF+ve+ e++fgrr+avheYP+rd  +ved+Gr++r+i+l++++++++       +++qrd+L++a e++g+g+LvhPtlGel+v
  EHT97747.1  25 LHAASFRGVPFAVESGEGTFGRRQAVHEYPYRDSVWVEDMGRATRRITLTGFIIQSSrvytagdVMTQRDSLVAAAETSGSGTLVHPTLGELTV 118
                 789****************************************************************************************987 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.11     1e+03      27      41 ..     248     262 ..     245     296 .. 0.71
   2 ?   10.4   0.1   7.2e-05      0.65      28      60 ..     382     414 ..     374     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.11
        HalX  27 seaeLadseeYqeLe 41 
                 s ++ ad++ Y++L 
  EHT97747.1 248 STDNTADTDDYAALV 262
                 567778888888877 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.2e-05
        HalX  28 eaeLadseeYqeLearleelraqldetldeldd 60 
                 +a La++ +Y++L ++l++lr  + +tl++l++
  EHT97747.1 382 AALLAADNAYDDLYRQLQTLRGNIVDTLSNLGA 414
                 56699*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3500.52
//
Query:       EHT97748.1  [L=356]
Description: Mu P family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-13   50.1   0.0    2.8e-13   49.9   0.0    1.1  1  Phage_GPD  Phage late control gene D protein (GPD)


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.5e-17   2.8e-13       3     299 ..      25     322 ..      23     327 .. 0.69

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1.5e-17
   Phage_GPD   3 gls.elfefeldllssdadldlka..llgqpvtvsielddgskrvihGlvteaeqvgadgrlarYrltlrPwlwlltlrrdsri......FqnktvpdI 92 
                 +++  + +fel+l+ + ++ d k+    g  + v+i    gs+ v++G++++++ + +    ar+r+  + + ++++l  d++           +  +I
  EHT97748.1  25 SIEhLPSDFELSLMDEFPGSDGKQlvKPGDACVVKI----GSDTVLTGYIDRWSPMIS---RARHRVQAVGRSKCADLV-DCSAywknnvISGASPLQI 115
                 56666899******99999999996678********....89*************999...4569**************.66663333333445667** PP

   Phage_GPD  93 leavlaehgiavekrfrlersypkreycvQyrESdlaFvsRLleeeGifyffehedgshtLvladassalppsaggpsiryhrqsgteaereaitrfae 191
                 +++++a +gi+v+    +++   + +++++++ES  ++++R ++++ ++y+   ++ ++ L l++ ++   ++  ++ +++ +q+++ea+  + +++ e
  EHT97748.1 116 AQKLAAPYGITVASD--VDVGTTVPQFTLNWGESSQEVIDRITRWAALLYY---DKPDGSLFLTRVGTK--QA--ASGVKQ-GQNIQEAA--YESTMDE 202
                 ********9999666..89999*****************************...444699*****9988..42..333333.35555552..3344444 PP

   Phage_GPD 192 arrlapgkv.tlrdydykkpkadlsaea.aqpraaasalevydypg.dyaskaegerlar..lrlealrararrfsgesnvrg........lapGrtft 277
                 + ++ +g++ +++  + +  +   +a+a a ++ +++a+ +y+ ++   +s++ +++ a+  + +e  r+ +r+ s+  +v +         +p++++ 
  EHT97748.1 203 RFSVYTGVSmAVTPINEESGDDAYEAVAlATATDPEAAAMRYRNRTvIIESTMTANQQAQqcIDWEMNRRYGRSKSLLVTVDSwrdsagnlWEPNTLIP 301
                 444444332133334444444444444433333333334555555574455544444444115678888888888887777777777777447888887 PP

   Phage_GPD 278 lsghprkaaanreylitsvehh 299
                 +s  p    +++ +l+ +v+++
  EHT97748.1 302 ISL-PVFGLEDELWLLGEVTFR 322
                 777.546777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2816.28
//
Query:       EHT97749.1  [L=193]
Description: Phage baseplate assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-23   83.0   0.1    2.2e-23   81.9   0.0    1.6  2  Phage_Mu_Gp45  Bacteriophage Mu Gp45 protein
     0.0056   16.7   2.6      0.011   15.8   0.7    2.4  2  Phage_spike    Phage spike trimer


Domain annotation for each model (and alignments):
>> Phage_Mu_Gp45  Bacteriophage Mu Gp45 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   2.5e-27   2.2e-23       3      99 ..      17     112 ..      16     113 .. 0.94
   2 ?   -3.5   0.0      0.96   8.6e+03      66      79 ..     167     180 ..     165     184 .. 0.67

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2.5e-27
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--S---SSSTT-EEEE-TTS-EEEEET.TEE CS
  Phage_Mu_Gp45   3 gvvtlvndsgkvqtlqvellagetlddverfqpyGftSvppaGaeaivlavgGdrshgvviavedrryRlkglkeGevalYddegqkvvlkr.grv 97 
                    g+vt ++d+g +qtlq++   +     ++r++++Gf+S+pp G++++v+++gGdrs  +via+++r +Rl+glk+Ge+a+Y+++g  v l++ g+ 
     EHT97749.1  17 GRVTGMTDTGLTQTLQFRTPLDVM--SAHRLAEFGFSSAPPIGSDVLVASLGGDRSSPIVIATNHRGSRLTGLKAGETAIYNQTGMYVKLTAsGIE 110
                    78999************9976655..579***************************************************************9999 PP

                    E. CS
  Phage_Mu_Gp45  98 ie 99 
                    +e
     EHT97749.1 111 VE 112
                    87 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.96
                    XX--S---SSSTT- CS
  Phage_Mu_Gp45  66 edrryRlkglkeGe 79 
                    +d  + +kg+++G 
     EHT97749.1 167 NDHTHAVKGVQTGS 180
                    56667777777776 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.7   1.2e-06     0.011       2      27 ..     123     148 ..     122     161 .. 0.87
   2 ?   -1.3   0.0      0.27   2.4e+03      10      21 ..     180     191 ..     176     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-06
                  -SEEEEE-SSEEEEESSEEEEEEEEE CS
  Phage_spike   2 iktatvkAstsitLdtPevecTgnLt 27 
                  + t+t++Ast + ++tP  +++g+++
   EHT97749.1 123 ATTVTINASTGVVMNTPSLKVSGDVI 148
                  579********************986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.27
                  SSEEEEESSEEE CS
  Phage_spike  10 stsitLdtPeve 21 
                  s+++t ++P +e
   EHT97749.1 180 SSQVTSEAPGTE 191
                  899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1546.20
//
Query:       EHT97750.1  [L=144]
Description: GP46 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-36  123.4   1.1    4.3e-36  123.2   1.1    1.1  1  GP46      Phage protein GP46
  ------ inclusion threshold ------
       0.11   12.6   0.3        1.1    9.4   0.1    2.3  2  SLH       S-layer homology domain


Domain annotation for each model (and alignments):
>> GP46  Phage protein GP46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   1.1   4.8e-40   4.3e-36       2     113 ..      30     137 ..      29     140 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 4.8e-40
        GP46   2 LrtavlisLFtdrraeaddelpdgaedrrGwwgDafedegdpiGSrlWllrReklttevlrkakeyaeeALqWliddgvaksvdveaerserdvlalsv 100
                   tav+isLF+dr+a++dd+++   +dr+GwwgD  +d   +iGSr+WllrR+ ltt v++ a+ ya+eALqWliddgv  sv+v++++  +  l +++
  EHT97750.1  30 VDTAVYISLFSDRQARSDDSIDG--DDRKGWWGDLDAD--YQIGSRIWLLRRQRLTTTVANSAASYAKEALQWLIDDGVLDSVSVSTQIVYPRSLFMTI 124
                 579********************..*********9999..9********************************************************** PP

        GP46 101 tltepdgstlkit 113
                 t+++pdg++++ +
  EHT97750.1 125 TCQKPDGTSTSAK 137
                 *******998766 PP

>> SLH  S-layer homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.07   6.3e+02       3      12 ..       2       9 ..       1      11 [. 0.79
   2 ?    9.4   0.1   0.00012       1.1       5      25 ..      84     105 ..      81     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.07
         SLH  3 kDvkkhdawa 12
                +D+k++  w+
  EHT97750.1  2 TDIKTI--WY 9 
                8*****..54 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00012
         SLH   5 vkkhda.wakdaiealaelGii 25 
                 v++++a +ak+a ++l++ G++
  EHT97750.1  84 VANSAAsYAKEALQWLIDDGVL 105
                 89999*9***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1117.47
//
Query:       EHT97751.1  [L=383]
Description: phage baseplate J-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-75  251.5  10.0    8.3e-75  251.2  10.0    1.1  1  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.2  10.0   4.7e-79   8.3e-75       1     255 []      66     348 ..      66     348 .. 0.96

  Alignments for each domain:
  == domain 1  score: 251.2 bits;  conditional E-value: 4.7e-79
  Baseplate_J   1 rgeyLdrlgelevgvtRkpAtkAsg.tvtftgeagtvIpaGtrvstadglsfattedtitagqgsatvkvtaeea.........GaagNvpagtslll 88 
                  ++eyL+++++l ++++Rk+At+A+g t+t tg+ag+vIpaGt+++++dg++++++++ ++ ++g++t +vta+ +         G++gN++agt+l+l
   EHT97751.1  66 TDEYLAAWAAL-KDIYRKAATAATGkTITLTGTAGSVIPAGTLLNRSDGYQYTVNAELTIGSAGNITGAVTAVLPdtstdstggGEDGNADAGTVLTL 162
                  69*********.5**********76379********************************************************************** PP

  Baseplate_J  89 dtaiagiqsvavantkvssgGadiEsdealreRillalqepptgGnkadYkewalevqgVtrakvlplwngpGtVkvvilld.......ngglPtael 179
                    ai+g++++a+a++  ++gGadiE++e +r+R+lla+qepp+gG++adYkewal+v+gVtra+v+p+  g+GtV+v++++d       ++++P++++
   EHT97751.1 163 NVAIDGVDTTATATAA-ITGGADIEDEEVFRSRMLLAYQEPPQGGSDADYKEWALAVPGVTRAWVTPRLLGAGTVGVYFMMDpdgattnDNSFPSGTD 259
                  *********9988855.****************************************************************98666654449****** PP

  Baseplate_J 180 lak.................VqayiseglrPvtaevtvlaptekavnitat.lllaegtdseavkqaveaaiqayfkeeakpggtivlsqieaa 255
                  + +                 V++yi + +rPvta+v+v +p++ a+n++++ +    +t+++++k+a+++ai++ +++ ++pggti+l++i aa
   EHT97751.1 260 GYAtketqysgqvatgdqltVADYI-YSERPVTATVYVASPIKTAINFEISgI----ATATSTTKSALQTAISNILFDDGEPGGTIYLTDIIAA 348
                  **9**********************.*************************99....78999****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2945.37
//
Query:       EHT97752.1  [L=187]
Description: hypothetical protein CKS_5615 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-34  117.4   0.0    6.2e-34  117.2   0.0    1.0  1  DUF2313   Uncharacterised protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
      0.033   14.0   1.3      0.046   13.6   1.3    1.2  1  PknH_C    PknH-like extracellular domain


Domain annotation for each model (and alignments):
>> DUF2313  Uncharacterised protein conserved in bacteria (DUF2313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   6.9e-38   6.2e-34       7     163 .]       1     181 [.       1     181 [. 0.98

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 6.9e-38
     DUF2313   7 lppglaesr....elqallegeapeldrleasaddllkelfpetatelLkdWEkvlglpd....nssetleeRRaavlaklnekgglsiayikklaesl 97 
                 +p g+++ r     ++a+l+g+a ++ +  ++a  l+   fp+tat +L++WE++++lpd     ++ + ++R+ av +kl++ gg+s+a ++  a++l
  EHT97752.1   1 MPTGKIWRRdassTQTAVLTGIANAFYESGSEAYGLIAGSFPATATTMLSEWESTMALPDdctiGETYSTSARQLAVSTKLATAGGQSVAHFTTAAKAL 99 
                 799999999999999***********************************************999999******************************* PP

     DUF2313  98 lGeeeveItenqparvganr.........erYifqVqvp.........gasgagenLeawgaavlecllerikPahtevilayt 163
                  G+  ++Ite++par+g +r         +r++++V++p         g++ a+++ ++wg++ lec l+++ P+ht + ++y+
  EHT97752.1 100 -GY-DITITEYRPARAGLSRcgasingndWRWVWKVTAPdttitwahaGEAYANDPIDSWGNKLLECRLKDMSPSHTILLFTYE 181
                 .*9.***************99*************************************************************95 PP

>> PknH_C  PknH-like extracellular domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   5.1e-06     0.046      71     140 ..      67     143 ..      45     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.1e-06
                 EEE-SSTT-SEE......EEEEEEE-SSHHHHHHH......HHHHHHHHHTTTT-EEEEEETTEEEEEEE---B--TT-EEE CS
      PknH_C  71 tlrdsaddgasl......vsqavvafptadaAqaf......faalaaqwrrCagvttttdsggatetwtvgdvsdddgvlta 140
                 t+++sa+  a++       +q+v+ f+ta++A         ++ ++a + rC+    ++ ++++++ w+v+ ++++  +++a
  EHT97752.1  67 TYSTSARQLAVStklataGGQSVAHFTTAAKALGYdititeYRPARAGLSRCGA---SINGNDWRWVWKVTAPDTT--ITWA 143
                 4444444444445556669***************9***999999**********...6899999999999999988..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1407.10
//
Query:       EHT97753.1  [L=76]
Description: putative bacteriophage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   13.2   0.0       0.11   12.7   0.0    1.2  1  TetR_C_31  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.2e-06      0.11      45      77 ..      33      66 ..      29      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-06
                HHHHHHHHHHHHHHHHHHCS.S-HHHHHHHHHHH CS
   TetR_C_31 45 arlrralrealaallaalGl.pdpeeaarllvaa 77
                a+++ ++ + l+a+++a+Gl pdp   a+ll a+
  EHT97753.1 33 AAWFNTIQRELIAIVTAAGLtPDPTNDAQLLAAL 66
                57999999*****************888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 567.14
//
Query:       EHT97754.1  [L=308]
Description: putative phage tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-07   30.9   0.3    5.5e-07   29.5   0.3    1.8  1  Collar       Phage Tail Collar Domain
  ------ inclusion threshold ------
        0.1   12.8  36.6       0.67   10.3   0.4    6.0  5  Phage_fiber  Phage tail fibre repeat


Domain annotation for each model (and alignments):
>> Collar  Phage Tail Collar Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.3   6.1e-11   5.5e-07       1      57 []     108     157 ..     108     157 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 6.1e-11
                 T-EEEESSSS-SST..EEESBS-B--TTT-HHHHHHCTTTTSB.-SSSBB--B-TTXXX CS
      Collar   1 GeiipfagnlapaG..WllcdGqslsisqypaLfaliGttyGgdgqttfnLPDlrgrfv 57 
                 G++ip++ ++ p++  W++ +Gqs++++ y++ +          +++t++LPD+rg++v
  EHT97754.1 108 GAPIPWPSDTLPTTgtWAFLQGQSFDKTVYTQTAV---------AYPTGVLPDMRGYTV 157
                 89*********97667*******************.........9***********975 PP

>> Phage_fiber  Phage tail fibre repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.8    0.0017        16       5      14 .]     177     186 ..     173     186 .. 0.86
   2 ?    8.2   1.9   0.00034       3.1       1      13 [.     205     217 ..     205     218 .. 0.84
   3 ?   10.3   0.4   7.4e-05      0.67       1      10 [.     257     266 ..     257     268 .. 0.86
   4 ?    0.8   2.4     0.087   7.8e+02       5       9 ..     270     274 ..     269     276 .. 0.88
   5 ?    7.8   2.2   0.00047       4.2       4      13 ..     278     287 ..     275     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0017
                  -B--EEEEEE CS
  Phage_fiber   5 aHsHsvSgst 14 
                  +H+H++S st
   EHT97754.1 177 SHTHTASVST 186
                  8******876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00034
                  .BBB-B--EEEEE CS
  Phage_fiber   1 ssaGaHsHsvSgs 13 
                  ssaG H+H+v ++
   EHT97754.1 205 SSAGGHYHNVYAD 217
                  79*******9666 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 7.4e-05
                  .BBB-B--EE CS
  Phage_fiber   1 ssaGaHsHsv 10 
                  +++GaH+H++
   EHT97754.1 257 DTQGAHTHTA 266
                  689******7 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.087
                  -B--E CS
  Phage_fiber   5 aHsHs 9  
                  aHsH+
   EHT97754.1 270 AHSHT 274
                  8***9 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.00047
                  B-B--EEEEE CS
  Phage_fiber   4 GaHsHsvSgs 13 
                  G+H+H+v+++
   EHT97754.1 278 GSHTHTVTIG 287
                  9******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2386.81
//
Query:       EHT97755.1  [L=200]
Description: putative tail fiber chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-17   64.0   1.5    1.8e-17   63.7   1.5    1.4  1  Caudo_TAP       Caudovirales tail fibre assembly protein, lam
    0.00047   20.0   0.2     0.0012   18.7   0.2    1.7  1  Phage_tail_APC  Phage tail assembly chaperone protein


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   1.5     2e-21   1.8e-17      11     129 ..      80     191 ..      13     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 2e-21
   Caudo_TAP  11 lkieydkeggelpesvvevsdineelkiqpkgkflvsdge..glpawvedkkeeqiqqAeqekqqllaqAseqiaplqdavdlgiatdeEkaaLlawkk 107
                 +     +++g l ++v+++         +p ++++ ++    ++++++++k ++  ++A ++ ++l+ +A++q+   +dav+l  atde++   +awk 
  EHT97755.1  80 RVGVLVTTLGALLDTVTTI---------APATEYDAWNATtgAWEVDTAAKLAAESEAAVEQVNTLMGTANQQVDIYTDAVSLPTATDEDTLMFTAWKT 169
                 4444444455555555555.........58888888886422577777777899999999999************************************ PP

   Caudo_TAP 108 YrvlLnrvDvslapdieWPeqP 129
                 Yrv+Ln vD+++ ++i WP+ P
  EHT97755.1 170 YRVALNKVDTTDPENIVWPTVP 191
                 ********************99 PP

>> Phage_tail_APC  Phage tail assembly chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   1.3e-07    0.0012      16      60 .]     149     192 ..     142     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-07
                     HHHHSTTS---HHH.HHHHHHHHHHHHHS---SS--S--------- CS
  Phage_tail_APC  16 DwvqlpDspldeee.rqalkaYrqaLRDlPeqegfPaaveWPeePe 60 
                     D v lp +++ ++   +a+k+Yr aL  +  +  +P++++WP+ P+
      EHT97755.1 149 DAVSLPTATDEDTLmFTAWKTYRVALNKVDTT--DPENIVWPTVPT 192
                     44445544443333689************766..9********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1651.81
//
Query:       EHT97756.1  [L=342]
Description: partitioning protein SpyB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-20   70.9   0.1    1.4e-19   70.0   0.1    1.5  1  SoPB_HTH  Centromere-binding protein HTH domain
    8.3e-12   45.2   0.1    5.5e-11   42.6   0.0    2.3  3  ParBc     ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> SoPB_HTH  Centromere-binding protein HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.1   1.5e-23   1.4e-19       1      68 [.     161     228 ..     161     234 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.5e-23
    SoPB_HTH   1 vsdleRarrYalaLkdeyannlsalaeaeklskkilskmlrvaklPdavvalFasPaelslksGdaLa 68 
                 +s++eR+rrY   L+ ++  n++ala aek+ +ki++++l +a+lP  v+ lFa+P+els+++G+ L 
  EHT97756.1 161 TSAYERGRRYRRLLEGKFEMNVTALASAEKVDRKIITRCLATANLPIEVIKLFANPSELSARAGHELS 228
                 79**************************************************************9885 PP

>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.27   2.5e+03       6      32 ..      14      38 ..      10      62 .. 0.66
   2 !   42.6   0.0   6.1e-15   5.5e-11      10      89 ..      80     156 ..      69     157 .. 0.88
   3 ?   -3.3   0.0       1.3   1.1e+04      21      36 ..     255     270 ..     248     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
       ParBc  6 seirpnplqprkdspekieelvasIkk 32
                s++r  + qpr++++++ +  v+++ k
  EHT97756.1 14 SKVR--ASQPRDNDAQAAAPVVNELSK 38
                4444..889998888887777777766 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 6.1e-15
       ParBc  10 pnplqprkdspekieelvasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlglkevpvivleiddeeamalslien 89 
                 +++lq  ++ + ++++l+ s+ + G+l P+++r++  g +e+ +G rR+++a + g ++++v+v ++dde++ als   n
  EHT97756.1  80 NERLQELLT-EAALDDLIPSFVSGGQLIPAFAREVT-GIIEVADGSRRRKTAIITG-SDYRVLVGDLDDEQMAALSQTGN 156
                 445555555.9************************8.*******************.******************99888 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.3
       ParBc  21 ekieelvasIkkkGll 36 
                  k e +v+++k++G++
  EHT97756.1 255 LKTEVIVEALKQAGQT 270
                 5667788999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2886.25
//
Query:       EHT97757.1  [L=391]
Description: partitioning protein SpyA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-28   98.4   0.0      6e-28   97.9   0.0    1.2  1  AAA_31       AAA domain
    3.1e-14   53.1   0.0    4.2e-14   52.7   0.0    1.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.3e-05   23.8   0.2      0.013   14.8   0.0    2.3  2  MipZ         ATPase MipZ
    0.00013   21.3   0.2      0.021   14.0   0.0    2.3  2  ArsA_ATPase  Anion-transporting ATPase
    0.00098   18.5   0.1       0.11   11.7   0.0    2.5  2  VirC1        VirC1 protein
     0.0044   16.8   0.0      0.015   15.1   0.0    1.9  2  MerR         MerR family regulatory protein
  ------ inclusion threshold ------
      0.017   14.7   0.0        0.7    9.5   0.0    2.2  2  PI-PLC-X     Phosphatidylinositol-specific phospholipase C, X
      0.051   13.7   0.0       0.16   12.1   0.0    1.8  1  Phage_Cox    Regulatory phage protein cox
      0.053   13.7   0.0       0.11   12.7   0.0    1.5  1  HTH_17       Helix-turn-helix domain
      0.065   13.4   0.0       0.13   12.4   0.0    1.5  1  DUF3853      Protein of unknown function (DUF3853)
      0.082   12.4   0.1        0.9    9.0   0.0    2.5  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
      0.084   12.3   0.6       0.22   10.9   0.1    1.8  2  ParA         NUBPL iron-transfer P-loop NTPase
       0.13   12.1   0.0       0.69    9.8   0.0    2.1  2  HTH_10       HTH DNA binding domain
       0.15   12.2   0.0       0.29   11.2   0.0    1.6  1  HTH_3        Helix-turn-helix
       0.19   11.9   0.0       0.46   10.6   0.0    1.6  1  MerR_1       MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0     5e-31     6e-28       4     167 ..     109     284 ..     106     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 5e-31
      AAA_31   4 IaianqKGGvGKTTtsvnlaaalaklgkkvLlvDl.DpQanattglgiekne...iektlyevli.eeknikeaiiktkvenldlipssidLaeaeiel 97 
                 + +a  KGG  KT +sv la++l+ +g +vLl+D+ DpQa a+ + g+  +    ++ tl+   + e+++++ ai+ t   +ld+ips + + ++e e+
  EHT97757.1 109 VGVAAHKGGAYKTSSSVHLAQWLSMQGWRVLLIDAtDPQATASLYHGYVPDLhihADDTLLPFYLgERTDVHYAIKPTCWPSLDIIPSCLAIHRIESEV 207
                 678999****************************66********99985433344888999999879999999999999******************** PP

      AAA_31  98 velekk.......eeilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieev 167
                 + l k        +e l+ ++ +v+d+YD+++iD  P+Lg+ t+n ++asd +i p+ ae y ++ ++q++ t++++
  EHT97757.1 208 MPLAKAgllptapHELLRAAIATVSDDYDIVVIDSAPNLGVGTMNVVCASDVLITPTPAEMYDYSSAQQFFVTMRDL 284
                 *****99999998888*****************************************************99888765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   3.5e-17   4.2e-14       3     120 ..     111     340 ..     109     348 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 3.5e-17
                 EEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.............................................. RF
        CbiA   3 iastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep.............................................. 54 
                 +a+ kGG+ KT+ +++La+ l+ +g+rVll+D +Dpqa+++  ++g ++d++                                               
  EHT97757.1 111 VAAHKGGAYKTSSSVHLAQWLSMQGWRVLLIDaTDPQATASL-YHGYVPDLHIhaddtllpfylgertdvhyaikptcwpsldiipsclaihriesevm 208
                 899*****************************99***99998.9999999999********************************************** PP

                 ................................................................CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS. CS
                 ................................................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
        CbiA  55 ................................................................dlkrllellealgkkkall..lkiagvvlnrvdge 87 
                                                                                 +++++  ++++l  +  l+     ++v+++++ + 
  EHT97757.1 209 plakagllptaphellraaiatvsddydivvidsapnlgvgtmnvvcasdvlitptpaemydysSAQQFFVTMRDLLATIDLHgfEPDVRVLVTKYSNA 307
                 ****************************************************************999999999*******999*9999*********99 PP

                 ..-TTCHHHHHHHHHHC.TS-EEE.EEE--CCHCC CS
                 xxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxx RF
        CbiA  88 neetllkealeelkqry.gvpvlg.viprdeavae 120
                     +++  +ee +++  g+ v++ v++ +++v +
  EHT97757.1 308 --PGSQSAYMEECMREAfGNMVMQsVVRVTDEVGK 340
                 ..9999999999998889*****977777777765 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.013       3      47 ..     109     153 ..     107     161 .. 0.90
   2 !    6.8   0.1    0.0031       3.7      88     135 ..     223     270 ..     205     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                 EEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHH CS
        MipZ   3 ivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlary 47 
                 + ++  kGG+ k+  +vh+a  L+ +G rv  id    q+t + y
  EHT97757.1 109 VGVAAHKGGAYKTSSSVHLAQWLSMQGWRVLLIDATDPQATASLY 153
                 568999****************************99999998776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHH CS
        MipZ  88 eleelvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvd 135
                  l++++a ++ ++d++vid+  +    +  +   +d l+tP    + d
  EHT97757.1 223 LLRAAIATVSDDYDIVVIDSAPNLGVGTMNVVCASDVLITPTPAEMYD 270
                 578999*************9999888888899999******7666655 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-05     0.021       8      40 ..     114     147 ..     107     153 .. 0.89
   2 !    5.0   0.0    0.0097        12     121     134 ..     231     244 ..     220     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                  ESTTSSHHHHHHHHHHHHHHTTS-EEEE.E-STT CS
  ArsA_ATPase   8 GKGGVGKttvsaatavklsekgkkvlli.stDPA 40 
                   KGG  Kt++s  +a +ls +g +vlli +tDP 
   EHT97757.1 114 HKGGAYKTSSSVHLAQWLSMQGWRVLLIdATDPQ 147
                  59*************************9679995 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0097
                  HCSSSSEEEEESBS CS
  ArsA_ATPase 121 keeeydvvvlDtaP 134
                   +++yd+vv+D+aP
   EHT97757.1 231 VSDDYDIVVIDSAP 244
                  589*********** PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.5e-05      0.11       5      42 ..     110     147 ..     107     153 .. 0.90
   2 ?    4.1   0.0     0.021        25      82     139 ..     233     290 ..     220     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
       VirC1   5 tfcslkGGaGkttalmglcsalasdgkrvalfeadenr 42 
                  +++ kGGa kt++ + l  +l  +g rv l +a + +
  EHT97757.1 110 GVAAHKGGAYKTSSSVHLAQWLSMQGWRVLLIDATDPQ 147
                 57899****************************98866 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
       VirC1  82 eGfdyaladtrgGsselnntiiassdllliPtmltpldidealatyryvielllaeel 139
                 + +d++++d+          ++ +sd+l+ Pt     d  +a + +  + +ll + +l
  EHT97757.1 233 DDYDIVVIDSAPNLGVGTMNVVCASDVLITPTPAEMYDYSSAQQFFVTMRDLLATIDL 290
                 5678888887665555555688999*******************99999999987655 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.015       2      28 ..      42      68 ..      41      73 .. 0.93
   2 ?   -2.3   0.0       3.2   3.9e+03      21      28 ..     212     219 ..     210     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                HHHHHHHHTTTHHHHHHHHHTTSSTSE CS
        MerR  2 IgevAeltGvsprtLRyYEreGLippp 28
                I evA++ G+s  t+R  E+ G +p p
  EHT97757.1 42 IQEVAKMIGISQPTIRAAEDDGRLPVP 68
                89********************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.2
                 HTTSSTSE CS
        MerR  21 reGLippp 28 
                 + GL+p++
  EHT97757.1 212 KAGLLPTA 219
                 78***976 PP

>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.071        84      26      66 ..     122     161 ..     115     169 .. 0.74
   2 ?    9.5   0.0   0.00059       0.7      67     121 ..     279     332 ..     269     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.071
                 ---SS-HHHHHHTT--EEEEEE-...TT.SEEEETTEEE.E CS
    PI-PLC-X  26 essveayrnaLlrGcRcvEidvwdgedeepvvlhgytltkk 66 
                 +ssv+  +   ++G R++ id+ d ++    ++hgy    +
  EHT97757.1 122 SSSVHLAQWLSMQGWRVLLIDATDPQAT-ASLYHGYVPDLH 161
                 3444444444579***********9999.9*****986555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00059
                 EEHHHHHHHHHHHHHHSTT--EEEEEEETTT-THHHHHHHHHHHHGGGGB-EEET CS
    PI-PLC-X  67 ikfrdvleaikdyafktselPvivsLevhcsaeqqekmaeilkeifgdlLleepl 121
                 +++rd l +i  ++f+  ++ v+v+   ++  +q + m e ++e+fg++++++  
  EHT97757.1 279 VTMRDLLATIDLHGFE-PDVRVLVTKYSNAPGSQSAYMEECMREAFGNMVMQSVV 332
                 7899*********997.68999999999999******************998755 PP

>> Phage_Cox  Regulatory phage protein cox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.16      14      45 ..      42      73 ..      33     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                HHHHHHHHT--HHHHHHHHHHT-S-EEEE--S CS
   Phage_Cox 14 eekFAeliGKtekAvrkmikdgKLPvvelkdP 45
                +++ A++iG ++  +r+  +dg+LPv ++ + 
  EHT97757.1 42 IQEVAKMIGISQPTIRAAEDDGRLPVPDMVQR 73
                6899**********************999765 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.3e-05      0.11       4      28 ..      42      66 ..      40      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.3e-05
      HTH_17  4 veEaAelLgvsrstvyrlirrgelp 28
                ++E+A++ g+s+ t++   ++g+lp
  EHT97757.1 42 IQEVAKMIGISQPTIRAAEDDGRLP 66
                89***************99999996 PP

>> DUF3853  Protein of unknown function (DUF3853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.13      26      71 ..      17      65 ..       8      74 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
     DUF3853 26 etkeeaktpkadakeekkfvy...GikglarllGislptanrikksGki 71
                +tk+ a+++ +d + + + ++   Gi+++a+++Gis pt+     +G +
  EHT97757.1 17 MTKQIAEYQFGDDSPSARTITrrwGIQEVAKMIGISQPTIRAAEDDGRL 65
                566667777555444444443333***************9888888765 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.71   8.5e+02     195     217 ..       3      25 ..       1      38 [. 0.77
   2 ?    9.0   0.0   0.00075       0.9       9      39 ..     114     144 ..     107     286 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.71
    CBP_BcsQ 195 lvihrDealaEalaakqPlgeyr 217
                 l+++ De++a a ++ + + ey+
  EHT97757.1   3 LLVRLDECIARAAMMTKQIAEYQ 25 
                 67899*****9999999899986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00075
    CBP_BcsQ   9 vRGGvGttsllaaLawalhelgesvlviDls 39 
                  +GG+ +ts ++ La+ l ++g +vl+iD++
  EHT97757.1 114 HKGGAYKTSSSVHLAQWLSMQGWRVLLIDAT 144
                 589**************************86 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.22       6      40 ..     109     143 ..     107     145 .. 0.94
   2 ?   -1.8   0.1       1.5   1.8e+03     110     146 ..     233     266 ..     221     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
        ParA   6 iavlSgKGGVGKStvavnlAlaLakkglkvgllDa 40 
                 + v++ KGG  K++ +v+lA  L+ +g +v l+Da
  EHT97757.1 109 VGVAAHKGGAYKTSSSVHLAQWLSMQGWRVLLIDA 143
                 679999***************************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
        ParA 110 gelDyLiiDlPPGtgDeqltvaqklplagaviVttpq 146
                 ++ D+++iD  P  g  ++ v+      +++i  tp 
  EHT97757.1 233 DDYDIVVIDSAPNLGVGTMNVVCAS---DVLITPTPA 266
                 6789999999998887666665443...455555555 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00058      0.69      22      40 ..      38      56 ..      36      59 .. 0.91
   2 ?   -0.8   0.0       1.2   1.4e+03      34      51 ..     214     231 ..     210     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00058
      HTH_10 22 RrvtlkeLAkelGIskstl 40
                Rr  ++e+Ak +GIs++t+
  EHT97757.1 38 RRWGIQEVAKMIGISQPTI 56
                999**************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
      HTH_10  34 GIskstlsehLrkaeskl 51 
                 G+ +++ +e Lr+a+ ++
  EHT97757.1 214 GLLPTAPHELLRAAIATV 231
                 77788899*****99876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024      0.29      13      34 ..      43      64 ..      33      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                HHHHHHHTSSHHHHHHHHTTSS CS
       HTH_3 13 eeLAeklGvsrstisriEnGer 34
                +e+A+++G+s+ ti++ E + r
  EHT97757.1 43 QEVAKMIGISQPTIRAAEDDGR 64
                79************98775555 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00038      0.46       3      34 ..      42      74 ..      41      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00038
                HHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS CS
      MerR_1  3 igevakilgvtthtlrywekegllkpkr.tegg 34
                i evak++g+++ t+r  e+ g l+ +   ++g
  EHT97757.1 42 IQEVAKMIGISQPTIRAAEDDGRLPVPDmVQRG 74
                89*****************99999999854444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2859.44
//
Query:       EHT97758.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97758.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97758.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97758.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97758.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 802.81
//
Query:       EHT97759.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97759.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 928.20
//
Query:       EHT97760.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-98  328.9   3.0    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.5   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.1    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  326.1   0.0  2.3e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT97760.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.3e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97760.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97760.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97760.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97760.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97760.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97760.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97760.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97760.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT97760.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97760.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97760.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97760.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97760.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97760.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT97760.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97760.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97760.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97760.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97760.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97760.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97760.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT97760.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97760.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97760.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97760.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97760.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97760.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97760.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97760.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT97760.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97760.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97760.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1047  (0.058397); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 3939.66
//
Query:       EHT97761.1  [L=54]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   16.3   0.0     0.0097   16.3   0.0    1.1  1  N_NLPC_P60  NLPC_P60 stabilising domain, N term


Domain annotation for each model (and alignments):
>> N_NLPC_P60  NLPC_P60 stabilising domain, N term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0097      54      78 ..       2      33 ..       1      52 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-07
                -HHHHHHHHHHHHHHHC.......GGGG-SS- CS
  N_NLPC_P60 54 saaeqaaldeefrrryF.......aPWnqtkl 78
                + a+q++++ ++++ryF       +PWn   +
  EHT97761.1  2 DTAAQQRHFSDLKSRYFgmgagekSPWNPSYI 33
                6799************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 414.57
//
Query:       EHT97762.1  [L=433]
Description: hypothetical protein CKS_5366 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-47  162.3   9.8    3.2e-47  161.7   9.8    1.3  1  Shigella_OspC  Shigella flexneri OspC protein


Domain annotation for each model (and alignments):
>> Shigella_OspC  Shigella flexneri OspC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   9.8   1.8e-51   3.2e-47       1     208 [.     187     403 ..     187     430 .. 0.88

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 1.8e-51
  Shigella_OspC   1 veisshqkklplnkkhhtvdfganayiiehdspygymtltdhfdnvipfvfyhehqsffldkfkevveevsryvhgskgkidvpifntkdmklglg 96 
                    ve s+++  +p+n+k++  +fg+nayi++ +  + y+tl  h+   +   f heh+  f  +f+   +e+s     +k   d+ ++ tk mkl +g
     EHT97762.1 187 VEFSDKNTIHPINTKYKGWNFGSNAYIVKDEFKHAYVTLDHHYSGYVTSDFEHEHKE-FTSQFEIAEKEISNIYTSNKEDNDIAMYSTKSMKLAIG 281
                    79999****************************************************.99************************************ PP

  Shigella_OspC  97 lylidfirkskdqsfkefcyeknldpvdldriinfvfqleyhiprmlstenfkkvklreisleeavkasnyeeinkkvtdkkialqalay...... 186
                    l li fir++ d  +kef+   +l+ +d+dr+inf+fq+eyh+prm+st++f+ v+l +isl++a+ a+n   i++ v dkk a+ a+        
     EHT97762.1 282 LNLIKFIRNTSDMKLKEFALSGQLSTLDIDRLINFIFQPEYHLPRMISTKKFQEVRLADISLKDAIMAANLTRIDELVKDKKDAYYAIKLvlflhk 377
                    ************************************************************************************999755111233 PP

  Shigella_OspC 187 ...sltnkke.dvalyllskfeitkq 208
                       s+tn  +  +  y+l k  +tk+
     EHT97762.1 378 ereSMTNLMAkRIISYILDKCSFTKE 403
                    33345554331467788888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3199.42
//
Query:       EHT97763.1  [L=293]
Description: hypothetical protein CKS_5367 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-23   83.1   0.0    2.6e-23   82.4   0.0    1.4  1  rve       Integrase core domain
    3.5e-16   58.7   0.0    6.3e-16   57.9   0.0    1.5  1  rve_3     Integrase core domain
    3.8e-09   36.6   0.0    1.5e-08   34.6   0.0    2.0  2  HTH_21    HTH-like domain
  ------ inclusion threshold ------
       0.71   10.6   0.1       0.71   10.6   0.1    2.4  3  Phe_ZIP   Phenylalanine zipper


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   5.9e-27   2.6e-23       6     118 ..     128     244 ..     123     245 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 5.9e-27
         rve   6 elwqvDvtvvripdgggkayllvvvddfsrlilaealsde.mdastvlalleravarfggve....pervlsDngseytskafrefladlgirvsftrp 99 
                  +w++D +++ + +g+ k+++++++d++ r+++ +a s+   d+stv++++ r v++++g +       +l+Dngs+yt+ ++r+f+++l+ ++++t++
  EHT97763.1 128 MRWCSDGFEFGCDNGE-KLRVTFALDCCDREAIDWAASTGgYDSSTVQHVMLRSVEKRFGDKlpdtAVQLLTDNGSAYTAYETRRFARELNLEPCTTAV 225
                 68******99988777.*********************9999*********************999999****************************** PP

         rve 100 grpqdnGkvErfhrtlkde 118
                  +pq+nG++Erf++t+k++
  EHT97763.1 226 SSPQSNGMAERFVKTMKED 244
                 ****************975 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   1.4e-19   6.3e-16       7      67 .]     222     282 ..     216     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.4e-19
       rve_3   7 yiapgkPqqNglvEsfngtlrdellneelfrslaearekleawredYNteRPHssLgykTP 67 
                  +a+ +Pq Ng +E+f +t+++ ++   ++ ++++a ++l+a++++YN+++PHs+Lgy++P
  EHT97763.1 222 TTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALQNLAAAFTHYNENHPHSALGYLSP 282
                 57899******************************************************99 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.4e-12   1.5e-08       6      58 ..      54     109 ..      48     111 .. 0.78
   2 ?   -2.4   0.0       1.2   5.6e+03       6      23 ..     260     279 ..     257     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.4e-12
      HTH_21   6 llalireifeeskgrYGyrriwaeLrre....ggvrvnhkrVrRlMrelGLrgvqrr 58 
                 +l  i +i  +  + YGyrr+w  Lr++    g  +vn kr +R+M e++L+  +++
  EHT97763.1  54 ILSGILDIISDM-PGYGYRRVWGILRKQrrteGLPPVNAKRLYRIMSEHNLLLLHNK 109
                 455577777776.88***********8544436559***************987665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
      HTH_21   6 llalireifeeskg..rYGy 23 
                 +la+  ++++e+++  + Gy
  EHT97763.1 260 NLAAAFTHYNENHPhsALGY 279
                 56777788999988667777 PP

>> Phe_ZIP  Phenylalanine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4       1.9   8.6e+03       5      14 ..     153     162 ..     152     164 .. 0.75
   2 ?   -1.5   0.0      0.97   4.4e+03      28      47 ..     219     240 ..     206     247 .. 0.57
   3 ?   10.6   0.1   0.00016      0.71      11      43 ..     255     288 ..     253     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
     Phe_ZIP   5 FCElhAraaA 14 
                  C+++A+  A
  EHT97763.1 153 CCDREAIDWA 162
                 6*****8655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.97
     Phe_ZIP  28 npqsaeplaaed..FskkFvel 47 
                 +p +++++++++   +++Fv++
  EHT97763.1 219 EPCTTAVSSPQSngMAERFVKT 240
                 4455544444444677888765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00016
     Phe_ZIP  11 raaAadfArayrrflaenpqsa.eplaaedFskk 43 
                 r+a +++A a+ ++ +++p+sa   l+++++ ++
  EHT97763.1 255 RTALQNLAAAFTHYNENHPHSAlGYLSPREYRQQ 288
                 678899****************999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2178.88
//
Query:       EHT97764.1  [L=92]
Description: hypothetical protein CKS_5368 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-14   51.7   0.2    5.5e-13   49.0   0.1    2.1  2  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.019   15.1   0.0        0.1   12.8   0.0    2.1  2  HTH_28     Helix-turn-helix domain
      0.042   13.7   0.0        0.1   12.4   0.0    1.7  2  HTH_23     Homeodomain-like domain
      0.095   12.7   0.0        0.2   11.7   0.0    1.5  1  HTH_29     Winged helix-turn helix
      0.098   12.6   0.0       0.52   10.3   0.0    1.9  2  DUF4982    Domain of unknown function (DUF4982)


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   1.5e-16   5.5e-13      25      72 ..       2      56 ..       1      58 [. 0.92
   2 ?    0.4   0.0      0.23   8.3e+02      14      30 ..      66      82 ..      61      84 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.5e-16
   HTH_Tnp_1 25 svsevArrhgvspnqLykWrrqyr........egeeaspaefeltaleeenrelkr 72
                +vs+vAr hg++p+ L+kW++qy+        +gee+ pa+ elta+ +++rel r
  EHT97764.1  2 NVSHVARLHGIQPSLLFKWKKQYQegslttvaAGEEVVPAS-ELTAALKQVRELHR 56
                79**********************88888888888888888.************98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
   HTH_Tnp_1 14 riVreslepgksvsevA 30
                ++++e++e g s + +A
  EHT97764.1 66 ELLKEAVEYGQSRKWIA 82
                67899999999888777 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05       0.1      14      40 ..       2      28 ..       1      35 [. 0.91
   2 ?   -0.3   0.0      0.34   1.2e+03       6      20 ..      68      83 ..      65      85 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
      HTH_28 14 svreaArelgisrrtvyrWikryeegG 40
                +v+ +Ar++gi ++ + +W k+y+eg 
  EHT97764.1  2 NVSHVARLHGIQPSLLFKWKKQYQEGS 28
                7899********************975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.34
      HTH_28  6 ikllaa.GhsvreaAr 20
                +k++ + G s++++A+
  EHT97764.1 68 LKEAVEyGQSRKWIAH 83
                4555555779999987 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.9e-05       0.1      19      45 ..       2      28 ..       1      32 [. 0.86
   2 ?   -3.2   0.0       2.2     8e+03      14      21 ..      71      79 ..      66      82 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkryreeG 45
                +v+ +Ar++g+ ++ + +w+k y+e+ 
  EHT97764.1  2 NVSHVARLHGIQPSLLFKWKKQYQEGS 28
                57889******************6554 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
      HTH_23 14 lae.Glsvr 21
                + e G+s++
  EHT97764.1 71 AVEyGQSRK 79
                334666665 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.4e-05       0.2      14      41 ..       2      29 ..       1      35 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGl 41
                +vs +A+l+g+ ++  ++w+k ++eg l
  EHT97764.1  2 NVSHVARLHGIQPSLLFKWKKQYQEGSL 29
                7999*********************985 PP

>> DUF4982  Domain of unknown function (DUF4982)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.52      32      58 ..      14      38 ..       4      41 .. 0.82
   2 ?    0.1   0.0      0.21   7.6e+02      14      29 ..      64      79 ..      60      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                SSS-EEEEEEB-SSEEEEEEEETTEEE CS
     DUF4982 32 kdyrltWdvpyepGeLkAvayknGkev 58
                + + ++W+ +y++G+L+ va   G+ev
  EHT97764.1 14 PSLLFKWKKQYQEGSLTTVA--AGEEV 38
                557899*************9..55555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
                EEEEEETTEEEEEE.. CS
     DUF4982 14 eVeLflNGkslGrkkk 29
                eVeL+     +G+ +k
  EHT97764.1 64 EVELLKEAVEYGQSRK 79
                8999999988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 683.77
//
Query:       EHT97765.1  [L=397]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-19   69.6   0.7    5.8e-19   68.6   0.7    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.7   3.2e-23   5.8e-19      31     200 ..     104     314 ..      89     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 3.2e-23
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk.......... 115
                 + ++ +++ +++d+rs  +ls  + + + + s+  k++ld+l         +++++DaG++ +++++++++ g+d+i r+++n +l  +          
  EHT97765.1 104 QEFHVLRASLLCDGRSIPLLSWIVPSEKQQNSQIQKDFLDALFCAvnrqARVIIVTDAGFQ-NAWFRHIKSLGWDFIGRIRGNIHLRLRsrgeywfrrq 201
                 4578999********9999999999****************99889999***********8.************************9999999988888 PP

   DDE_Tnp_1 116 .............................gaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlk 185
                                               ++ + +gr ++h r++i +ksq ++++   +k++++++++t+   + ++e++ ly++R+qiE++F++ k
  EHT97765.1 202 elkasrkpaylgqgtlaraeyarcdghfyLHKKESKGRKHRHSRCRIDRKSQAHDGR-SAAKEPWLIFSSTDH--FRPREIMKLYSRRMQIEQNFRDEK 297
                 87777777666666666555555555555488889**********************.888888888887765..9*********************** PP

   DDE_Tnp_1 186 rk.fg.ldrlryrglnr 200
                 +  fg ++r +y++ ++
  EHT97765.1 298 SErFGfGLRASYSRSAG 314
                 **999545555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2905.00
//
Query:       EHT97766.1  [L=91]
Description: DNA topoisomerase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-12   47.0   3.6    2.1e-12   46.8   3.6    1.1  1  Toprim_Crpt  C-terminal repeat of topoisomerase


Domain annotation for each model (and alignments):
>> Toprim_Crpt  C-terminal repeat of topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   3.6   1.2e-16   2.1e-12       1      59 [.      11      72 ..      11      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.2e-16
  Toprim_Crpt  1 gCgfsigktiagkklseeevkeLltkgktgllkGFk.sKkgkkFdAyLvldkdee..veFdF 59
                 gC+f+i+ +  gkk++++++k+++ kgk g +kGFk +K+  +++ +++l ++e+  ++F++
   EHT97766.1 11 GCKFKIWLEFRGKKFTQKQIKTIIGKGKSGEIKGFKsKKNDATYSMFVTLANKETgeLGFEY 72
                 7***********************************556677********999998999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 718.92
//
Query:       EHT97767.1  [L=129]
Description: DNA-binding protein H-NS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-12   47.4   1.6    3.5e-12   47.0   1.6    1.2  1  Histone_HNS  H-NS histone family


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   1.6     2e-16   3.5e-12       4      92 .]      35     121 ..      32     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2e-16
                  XXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX----SSS-----EEEEE.....---TTT-SSS..-EEEEES----HHHHHHH..... CS
  Histone_HNS   4 alieelekqeea..leaeerkealaeirelaaeyGltleelaaeakkakkkkakakkvpaKYrdpet.egetWsGrGrkPkwlkaalaagks 92 
                  a + e++++ ea  ++++er++++ e+ el++++G++ +e+a+  ++ k++k     +++KY+  e+   + WsG Gr P ++++ l+agks
   EHT97767.1  35 ASLTERKAEHEAleQQQKEREAKRLELLELIKAEGFSQDEFASIHTAPKAAK-----RKPKYQYIEGgITKYWSGVGRVPVVIQQELDAGKS 121
                  5556666666664479999999*******************55555554444.....899976655415789******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1682  (0.0938145); expected 358.6 (0.02)
Passed bias filter:                      886  (0.0494171); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 951.51
//
Query:       EHT97768.1  [L=344]
Description: mobilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-06   25.8   0.0    6.8e-06   25.2   0.0    1.2  1  AAA_10           AAA-like domain
    0.00015   21.9   0.0    0.00022   21.4   0.0    1.3  1  DUF87            Helicase HerA, central domain
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.022   13.6   0.0    1.5  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
      0.032   13.2   0.0      0.048   12.6   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN


Domain annotation for each model (and alignments):
>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.5e-09   6.8e-06      20      82 ..     188     253 ..     178     265 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.5e-09
      AAA_10  20 nasasliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlpe.....iakkinvvtLds 82 
                 +  ++ iiG +G+GK v + +l ++  l+g+ ++++Dpk++  ++   l++       k + +++L++
  EHT97768.1 188 QTQHADIIGTTGAGKGVASGILLYQSILAGEGVFVLDPKND--EWAPHLYKkacedAGKPFVLIDLNK 253
                 567889**********************************9..7776664423111333466666664 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.8e-08   0.00022       4      63 ..     172     228 ..     169     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.8e-08
       DUF87   4 GrllsgsevpvyldlnklvtrHlAilgsTGsGKSntvavLleellekkgatililDpHGE 63 
                 G l ++++ p y+ ++++ t+H  i+g+TG+GK    ++Ll + +   g  + +lDp ++
  EHT97768.1 172 G-L-TKDGEPQYIPVKEWQTQHADIIGTTGAGKGVASGILLYQSI-LAGEGVFVLDPKND 228
                 5.4.4556699******************************9999.8999*******984 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.8e-06     0.022      38     103 ..     173     252 ..     124     274 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.8e-06
  T4SS-DNA_transf  38 lntdGdf..........ehvlvvAptrsgKgvgvvi..PnllkwkqsiVvlDpkgElae..ltskiRkkqgrkVfvlePa 103
                      l +dG+           +h+ +++ t++gKgv+  i     +  ++ + vlDpk++ ++  l  k+ + +g+  ++ +  
       EHT97768.1 173 LTKDGEPqyipvkewqtQHADIIGTTGAGKGVASGIllYQSILAGEGVFVLDPKNDEWAphLYKKACEDAGKPFVLIDLN 252
                      444554445777777789*************965552267899999**********996224455555555544445555 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.048      11      53 ..     185     227 ..     180     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
  TrwB_AAD_bind  11 keretqhilivGttGsGKtqalekllrairargdraivlDltG 53 
                    ke  tqh+ i+GttG+GK +a   ll +    g+ + vlD++ 
     EHT97768.1 185 KEWQTQHADIIGTTGAGKGVASGILLYQSILAGEGVFVLDPKN 227
                    56689***********************9999********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2634.76
//
Query:       EHT97769.1  [L=90]
Description: hypothetical protein CKS_5375 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-20   70.6   0.4    1.2e-19   70.4   0.4    1.0  1  CcdB      CcdB protein


Domain annotation for each model (and alignments):
>> CcdB  CcdB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.4   6.5e-24   1.2e-19       4      85 ..       2      85 ..       1      88 [. 0.93

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 6.5e-24
        CcdB  4 vYrnpsaskkaipylldvqsdlldelktrvVvPLlraselskvakrLnpvlevegeevvlltaelaavpakeLgkk..vaslse 85
                +Y+n+s++k+ +py++dvqs++l++l+tr+V+PL+++++ +   k L+pv+++ + ++v+l++++++ ++k+L+++  v+++s+
  EHT97769.1  2 IYKNKSRNKQIYPYFIDVQSEMLSHLSTRLVMPLTQKANSNSQVKALTPVITIGQVDYVVLASMITTTDIKNLKAEdaVMDASH 85
                8*************************************************************************9744666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 719.10
//
Query:       EHT97770.1  [L=62]
Description: CcdA family antitoxin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-19   68.0   1.5    7.8e-19   67.9   1.5    1.0  1  CcdA           Post-segregation antitoxin CcdA
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.13   12.5   0.0    1.3  1  PNKP-ligase_C  PNKP adenylyltransferase domain, C-terminal re


Domain annotation for each model (and alignments):
>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   1.5   8.7e-23   7.8e-19      13      67 ..       2      56 ..       1      59 [. 0.97

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 8.7e-23
        CcdA 13 laqAralgiNlSatleeaLaeevkeekaerwkeenreaieelNrfveehGlfsde 67
                l++A+al++N+Sa++++aL+ +vke k+erw +enr++ie+lN+fv+e Glfsd+
  EHT97770.1  2 LEEAKALDLNVSAISNQALEVAVKESKRERWIAENRAGIEALNSFVAEAGLFSDD 56
                89****************************************************8 PP

>> PNKP-ligase_C  PNKP adenylyltransferase domain, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.13      12      38 ..      26      52 ..      14      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                   HHHHHHHHHHHHHHHHHHHHHHTT--H CS
  PNKP-ligase_C 12 grKrslAlrEfaLGlealerfvakepl 38
                   ++Kr+  + E + G+eal+ fva++ l
     EHT97770.1 26 ESKRERWIAENRAGIEALNSFVAEAGL 52
                   5799******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 474.93
//
Query:       EHT97771.1  [L=194]
Description: hypothetical protein CKS_5377 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1542.53
//
Query:       EHT97772.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT97772.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT97772.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT97772.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3165.56
//
Query:       EHT97773.1  [L=52]
Description: hypothetical protein CKS_5380 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       145  (0.00808746); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 408.32
//
Query:       EHT97774.1  [L=70]
Description: hypothetical protein CKS_5381 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.7   1.5      0.016   15.5   1.5    1.1  1  DUF5638   Family of unknown function (DUF5638)


Domain annotation for each model (and alignments):
>> DUF5638  Family of unknown function (DUF5638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   1.5   9.1e-07     0.016      16      69 ..      12      67 ..       6      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.1e-07
                HHHHT..------HHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH CS
     DUF5638 16 lsalf..edkelsekikkqlqeiktyYnesftkakkektkeeiveeYeelvlllsq 69
                l++l+    ke+++k+ k++   k +Y+e+f++ k+e+++  ++e Y e +l++++
  EHT97774.1 12 LEKLMkvRSKEVDKKTTKKVLFKKYFYSEEFSNVKDEIEDPILLEFYTETILKVQN 67
                5555544789***************************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 535.53
//
Query:       EHT97775.1  [L=64]
Description: hypothetical protein CKS_5382 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 504.86
//
Query:       EHT97776.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97776.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97776.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97776.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97776.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 845.35
//
Query:       EHT97777.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-39  131.7   0.0    8.4e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.4e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+  pfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97777.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDAPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1018.70
//
Query:       EHT97778.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT97778.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97778.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97778.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97778.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97778.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97778.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT97778.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97778.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT97778.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97778.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97778.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT97778.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97778.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT97778.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97778.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT97778.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT97778.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT97778.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97778.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT97778.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97778.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT97778.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97778.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97778.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97778.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97778.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97778.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97778.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97778.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT97778.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT97778.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT97778.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT97778.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT97778.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97778.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97778.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 3651.79
//
Query:       EHT97779.1  [L=54]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   16.3   0.0     0.0097   16.3   0.0    1.1  1  N_NLPC_P60  NLPC_P60 stabilising domain, N term


Domain annotation for each model (and alignments):
>> N_NLPC_P60  NLPC_P60 stabilising domain, N term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0097      54      78 ..       2      33 ..       1      52 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-07
                -HHHHHHHHHHHHHHHC.......GGGG-SS- CS
  N_NLPC_P60 54 saaeqaaldeefrrryF.......aPWnqtkl 78
                + a+q++++ ++++ryF       +PWn   +
  EHT97779.1  2 DTAAQQRHFSDLKSRYFgmgagekSPWNPSYI 33
                6799************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 448.34
//
Query:       EHT97780.1  [L=256]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-76  254.1   0.0    1.1e-75  253.7   0.0    1.1  1  DUF1460   Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0     6e-80   1.1e-75       2     210 ..      51     248 ..      50     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 6e-80
                 HHHHTTT-BB-TT---S-TT-S-S-SS-SS-B-HHHHHHHHHHHHHBSSHHHHHHHHHHHHBGGG--STTTB--STTTHHHHHHHTSEEE-GGG-B-TT CS
     DUF1460   2 israflgtpYkagtLiesaeekeklvirfdglDCftyvetvlalarssseeeFaknLkklRYkdgkvsflsRkHffsdWiannqkrllrdvtaeisnkk 100
                 +s+aflgtpY+a+tLi+++ ++e lv++f+g+DCft+ ++v+al+rs+++++F +nL+++RY++g+v++lsR+HffsdW+++++++ +rdvt +is+  
  EHT97780.1  51 VSSAFLGTPYQADTLIGGPGTPEALVVNFNGVDCFTLADYVEALTRSHDQKSFLHNLTEVRYTGGNVDYLSRRHFFSDWFTTAPRN-ARDVTPDISP-- 146
                 89***********************************************************************************9.**********.. PP

                 -EEE--EEEHHHHHHTHHHHHHHHHHHHHHHTT--EEEEEEHHHH-HHHHTTS-TT-EEEEEEEES-EEEEEEEEEEEETTEEEEEEEETTTTE..EEE CS
     DUF1460 101 aktlkalvtkkkkynqkadeeellaglkvvekalkklkYipkealdqavlsrlktGdiiaivtektgLdVsHvGlvirkndelvlrhASslkkkkkvvd 199
                      ++   +k++n+k d++e+++gl+++ +++   +Yip +++ q+vl+rlktGd+++++++++gLdVsHvG+v+r+++++++r+ASsl++++kvvd
  EHT97780.1 147 -----DYAVADKQLNRKPDGGEYIPGLGIHPRKI---NYIPGNTISQQVLDRLKTGDYVGVYSPLEGLDVSHVGIVVRHDGQVWFRNASSLAANRKVVD 237
                 .....888899***********************...************************************************************** PP

                 EEHHHHHHHHT CS
     DUF1460 200 eplldylkkkk 210
                 +p+l+y++ k+
  EHT97780.1 238 SPFLEYMRAKP 248
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1851.81
//
Query:       EHT97781.1  [L=406]
Description: outer membrane adhesion/aggregation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2941.04
//
Query:       EHT97782.1  [L=98]
Description: transposase Tn3 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-21   76.8   0.0    1.5e-21   76.6   0.0    1.0  1  DDE_Tnp_Tn3  Tn3 transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   8.4e-26   1.5e-21     306     389 .]       2      84 ..       1      84 [. 0.98

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 8.4e-26
  DDE_Tnp_Tn3 306 EsrhalaraiffgkegeirerrreeqekrlsalrLvanaivlwNtlylsealeelraegeevkdellarlsplawehinllGeY 389
                  E++++++ +if+gk+ge++++r eeqe ++ al+L++ ++v++Ntl+++++l+e+ +  +++k+e++++l+pl+++h+n++G +
   EHT97782.1   2 ENWNSANAFIFYGKGGEVATNRLEEQELSVLALHLLQICLVYVNTLMIQQVLHEPVWL-SRMKAEDFRALTPLIYAHVNPYGIF 84 
                  9*********************************************************.***********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 709.79
//
Query:       EHT97783.1  [L=136]
Description: hypothetical protein CKS_5354 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1009.47
//
Query:       EHT97784.1  [L=191]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-47  158.8   1.0    1.3e-46  158.4   1.0    1.2  1  Resolvase     Resolvase, N terminal domain
     0.0002   21.9   5.1    0.00068   20.2   0.7    2.3  2  HTH_32        Homeodomain-like domain
    0.00024   21.1   1.4     0.0029   17.6   0.0    2.3  2  HTH_29        Winged helix-turn helix
    0.00057   19.6   0.1      0.002   17.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
    0.00083   18.7   0.1      0.002   17.5   0.1    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0024   17.9   0.1     0.0056   16.8   0.1    1.6  1  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.023   14.8   0.0    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
       0.04   13.7   0.0        0.1   12.4   0.0    1.7  1  HTH_23        Homeodomain-like domain
      0.062   13.5   0.0       0.18   12.0   0.0    1.8  1  HTH_17        Helix-turn-helix domain
      0.093   12.4   0.6       0.37   10.5   0.0    2.1  2  Sigma70_r4_2  Sigma-70, region 4
       0.23   12.3   4.5       0.11   13.3   1.3    2.0  2  FliT          Flagellar protein FliT
       0.31   10.7   1.8         12    5.6   0.0    2.7  3  HTH_33        Winged helix-turn helix


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   1.0   8.5e-50   1.3e-46       2     145 ..       3     135 ..       2     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 8.5e-50
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEES CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvsl 100
                 igYaRvSt+eqd  +++Q+ al+ +++e    i   f++k +SG + +Rp+l+rll+++r+   d ++v+kldRL+Rs++dll +le++++ g++++s+
  EHT97784.1   3 IGYARVSTQEQD--TQAQISALKSAGCEL---I---FQEK-ASGGRWDRPELQRLLQQIRK--DDQVIVWKLDRLSRSLKDLLLTLEKIENTGADFRSI 90 
                 8***********..************777...9...****.********************..************************************ PP

                 S..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 101 degidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 +e+idtstp+gr+++qi++++aefer+++rertk+glaaa++ G+
  EHT97784.1  91 TENIDTSTPAGRMMMQIVGSFAEFERAMLRERTKNGLAAARQDGR 135
                 *******************************************98 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.064        95      28      56 ..      39      70 ..       6      80 .. 0.61
   2 !   20.2   0.7   4.6e-07   0.00068       7      73 .]     121     180 ..     116     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.064
      HTH_32 28 klsdevrariiallreep...rWsprqlaarl 56
                +++  + +r+++ +r++     W +++l++ l
  EHT97784.1 39 RWDRPELQRLLQQIRKDDqviVWKLDRLSRSL 70
                45566666666666443356666666665555 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4.6e-07
      HTH_32   7 kRyneeGlegLk.drprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 
                 +R  + Gl++ + d + +gr++kl+++++++i+ l+++  + +    a+        +v++stv r+L
  EHT97784.1 121 ER-TKNGLAAARqDGRVGGRRPKLTPQQQKEIVSLVTSG-QKTGADAARLF------RVHPSTVVRLL 180
                 45.56788855526666689999*************555.77777777755......78888887776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.084   1.3e+02      40      62 ..     126     148 ..     119     150 .. 0.62
   2 !   17.6   0.0   1.9e-06    0.0029       2      41 ..     149     188 ..     148     191 .] 0.91

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.084
      HTH_29  40 Glaalld..rrrsgrprnrlseeqe 62 
                 Glaa++   r +++rp  +l+++q+
  EHT97784.1 126 GLAAARQdgRVGGRRP--KLTPQQQ 148
                 6666555445555555..4999986 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.9e-06
      HTH_29   2 aqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGl 41 
                 ++++ l+  G++t +++A+l +++++tv r l r +++++
  EHT97784.1 149 KEIVSLVTSGQKTGADAARLFRVHPSTVVRLLARHRMTEI 188
                 78999***************************99887766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         3   4.4e+03       9      19 ..      41      51 ..      41      51 .. 0.83
   2 !   17.8   0.0   1.3e-06     0.002       2      44 .]     140     183 ..     139     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3
      HTH_38  9 eReeIerllae 19
                +R e++rll++
  EHT97784.1 41 DRPELQRLLQQ 51
                68899999986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.3e-06
      HTH_38   2 ykhLsleeReeIerllaeG.lslreIArrLgrspsTIsRElkRn 44 
                 + +L++++  eI  l   G ++ ++ Ar+  ++psT+ R l R+
  EHT97784.1 140 RPKLTPQQQKEIVSLVTSGqKTGADAARLFRVHPSTVVRLLARH 183
                 789*************9999*********************996 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.3e-06     0.002      19      51 ..     150     183 ..     147     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
  HTH_Tnp_ISL3  19 yilellles.rsvkavArqlgvSwtTVwrildry 51 
                    i+ l++++ ++ +++Ar+++v+++TV r l r+
    EHT97784.1 150 EIVSLVTSGqKTGADAARLFRVHPSTVVRLLARH 183
                   6899999999999*****************9997 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.7e-06    0.0056       3      35 ..     149     182 ..     147     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.7e-06
      HTH_28   3 leiikllaaGh.svreaArelgisrrtvyrWikr 35 
                 +ei+ l+ +G  + ++aAr++ ++++tv r++ r
  EHT97784.1 149 KEIVSLVTSGQkTGADAARLFRVHPSTVVRLLAR 182
                 79*******998******************9987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.5e-05     0.023       1      43 [.     138     181 ..     138     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
                 S---SS-HHHHGGGGSSTTTT.--STTTSSSS---SSSS--SS- CS
       HTH_7   1 GRpsklskndinrvvkLleeG.isiskIAkevnisRsTvYRyla 43 
                 GR++kl++ ++ ++v L+ +G  + ++ A+ + + +sTv R la
  EHT97784.1 138 GRRPKLTPQQQKEIVSLVTSGqKTGADAARLFRVHPSTVVRLLA 181
                 9********************8888999**********988775 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05       0.1      10      40 ..     151     182 ..     145     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
      HTH_23  10 illllae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 i+ l+    ++ +++Ar++ v+++Tv r l r
  EHT97784.1 151 IVSLVTSgQKTGADAARLFRVHPSTVVRLLAR 182
                 5666666678899****************998 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.18       5      26 ..     163     184 ..     161     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
      HTH_17   5 eEaAelLgvsrstvyrlirrge 26 
                 ++aA+l++v++stv rl+ r++
  EHT97784.1 163 ADAARLFRVHPSTVVRLLARHR 184
                 69**************998876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.69     1e+03       3      20 ..      44      61 ..      42      73 .. 0.73
   2 ?   10.5   0.0   0.00024      0.37      12      49 ..     145     182 ..     145     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.69
                  HHHHHHTTS-HHHHHHHH CS
  Sigma70_r4_2  3 alrealaeLperqreifl 20
                  +l+++l++  ++++ i+ 
    EHT97784.1 44 ELQRLLQQIRKDDQVIVW 61
                  578888888888887775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
                   -HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2  12 perqreifllryleglsykEIAellgisegtVksrlsR 49 
                   p++q+ei+ l    +++ +++A+l+ ++++tV + l+R
    EHT97784.1 145 PQQQKEIVSLVTSGQKTGADAARLFRVHPSTVVRLLAR 182
                   899*****************************999888 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   7.3e-05      0.11      12      74 ..       7      76 ..       4      81 .. 0.92
   2 ?   -1.4   0.1       2.9   4.3e+03      31      44 ..     133     152 ..     113     159 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
                HHHHHHHHHHHHHHHHHCS-.......-ST--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
        FliT 12 elaaleaerqqlverlreld.......aaplspaereekrellrrilandaeirallqprldelqkllga 74
                +++++e++ q+++ +l+++         a     +r+e+++ll++i+++d+ i   l++   +l++ll +
  EHT97784.1  7 RVSTQEQDTQAQISALKSAGcelifqeKASGGRWDRPELQRLLQQIRKDDQVIVWKLDRLSRSLKDLLLT 76
                78999********************99999***********************99999999999998866 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
                 -......-ST--HHHHHHHH CS
        FliT  31 d......aaplspaereekr 44 
                 d       + l+p++++e+ 
  EHT97784.1 133 DgrvggrRPKLTPQQQKEIV 152
                 23445555566666666665 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       4.8   7.2e+03      46      53 ..      11      18 ..       6      18 .. 0.72
   2 ?    3.8   0.0     0.029        44       2      16 ..      37      51 ..      36      52 .. 0.91
   3 ?    5.6   0.0    0.0084        12      21      37 ..     170     186 ..     169     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.8
      HTH_33 46 pkqdpeaq 53
                 +qd +aq
  EHT97784.1 11 QEQDTQAQ 18
                79999998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
      HTH_33  2 fgrWtlarlaqliee 16
                +grW +++l++l+++
  EHT97784.1 37 GGRWDRPELQRLLQQ 51
                79**********997 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0084
      HTH_33  21 sysvsgvyrlLkrlGfs 37 
                 ++++s+v rlL r+ ++
  EHT97784.1 170 RVHPSTVVRLLARHRMT 186
                 589***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1395.15
//
Query:       EHT97785.1  [L=417]
Description: putative outer membrane adhesion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3234.76
//
Query:       EHT97786.1  [L=261]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-87  294.1   0.0    1.5e-87  293.9   0.0    1.0  1  DDE_Tnp_Tn3  Tn3 transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   0.0   8.3e-92   1.5e-87     157     389 .]       1     235 [.       1     235 [. 0.99

  Alignments for each domain:
  == domain 1  score: 293.9 bits;  conditional E-value: 8.3e-92
  DDE_Tnp_Tn3 157 vldgllrnesdlepeelatDthGysdvvFallhllgfklaPRlrdlkdq..klyrpdakadykeldalltkkinldlIeehwddllrlaaSiklgkvs 252
                  +l+gll++e++l+p+e++tDt+G+sd+vF+l++llg++++PRl+d +     ++r+d++ady+ l+++++++ + ++I  +wd+++r a S+klgkv+
   EHT97786.1   1 MLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQFSPRLADADAGasVFWRMDNDADYGVLNDIARGQSDPRKIVLQWDEMIRAAGSLKLGKVQ 98 
                  89*****************************************98876555*********************************************** PP

  DDE_Tnp_Tn3 253 astilrkLssysrqnplykAlrelGriikTlfllrYlddeelRreiqaqlnkgEsrhalaraiffgkegeirerrreeqekrlsalrLvanaivlwNt 350
                  as ++r L +++r+  l +A+ e+Gri kTl+ll+Y+dde++ r+i +qln+gEsrha+arai++g++geir+r+ ++qe++l+al+Lv+naivlwNt
   EHT97786.1  99 ASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYHRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGALGLVTNAIVLWNT 196
                  ************************************************************************************************** PP

  DDE_Tnp_Tn3 351 lylsealeelraegeevkdellarlsplawehinllGeY 389
                  +y+++al++lr++ge v+de++arlspl + hin+lG+Y
   EHT97786.1 197 IYMQAALDHLREQGESVNDEDIARLSPLCHGHINMLGHY 235
                  **************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2210.08
//
Query:       EHT97787.1  [L=64]
Description: hypothetical protein CKS_5359 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 562.16
//
Query:       EHT97788.1  [L=53]
Description: hypothetical protein CKS_5360 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 429.26
//
Query:       EHT97789.1  [L=71]
Description: hypothetical protein CKS_5361 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.023   15.0   0.0    1.2  1  HTH_31          Helix-turn-helix domain
        0.1   12.7   0.0       0.12   12.5   0.0    1.0  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.6e-06     0.023       5      36 ..       9      40 ..       7      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.6e-06
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEq 36
                +++a+R +aGLs++e+A+  g+    +   E+
  EHT97789.1  9 QVKAARIAAGLSLKEAADTFGYQLNSWQMKES 40
                789******************99998876665 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.12      70     125 ..       6      65 ..       2      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
  MqsA_antitoxin  70 dpafiarvrkkleldqreaaeifGgGvnafsrye.kGkvrpplalvk...llklldrhPe 125
                      p++++  r + +l+ +eaa+ fG   n++   e +Gk+  +l++ +   ll l ++hPe
      EHT97789.1   6 TPEQVKAARIAAGLSLKEAADTFGYQLNSWQMKEsAGKASRSLSIGEyeyLLLLANQHPE 65 
                     5889999999********************988835999999998543337888899*98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 585.20
//
Query:       EHT97790.1  [L=118]
Description: putative DNA-binding prophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0018   18.3   0.1     0.0034   17.4   0.1    1.5  1  HTH_3          Helix-turn-helix
  ------ inclusion threshold ------
      0.024   14.6   0.1      0.057   13.4   0.1    1.7  1  HTH_29         Winged helix-turn helix
      0.027   14.3   1.4      0.027   14.2   0.2    1.7  2  HTH_8          Bacterial regulatory protein, Fis family
      0.058   13.5   0.1       0.17   12.0   0.0    1.8  2  HTH_7          Helix-turn-helix domain of resolvase
      0.067   13.3   0.2       0.12   12.6   0.2    1.4  1  HTH_28         Helix-turn-helix domain
       0.11   12.3   0.4       0.86    9.5   0.0    2.2  2  HTH_IclR       IclR helix-turn-helix domain
       0.14   12.3   0.0       0.21   11.8   0.0    1.3  1  Spindle_Spc25  Chromosome segregation protein Spc25


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.3e-06    0.0034       9      50 ..      70     109 ..      61     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.3e-06
                 THHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTS CS
       HTH_3   9 glsqeeLAeklGvsrstisriEnGernPsletlkklakaLgv 50 
                 g+s  e+A+k+G+ r++i+r  +   nP+++tl  la + g+
  EHT97790.1  70 GIS--EAAKKSGLARQSIYRALSPNGNPTITTLAQLAAVAGL 109
                 555..7*******************************98776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.2e-05     0.057       5      33 ..      61      89 ..      58      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
      HTH_29  5 llllaeGvstvsqiAkllglsrrtvyrwl 33
                l+ + e+ + +s++Ak  gl r+++yr+l
  EHT97790.1 61 LRQVIEARGGISEAAKKSGLARQSIYRAL 89
                6666677777*****************86 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.5   8.9e+03       9      16 ..      40      47 ..      39      47 .. 0.74
   2 ?   14.2   0.2   1.1e-05     0.027      16      39 ..      66      89 ..      59      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.5
                HHHHHHHH CS
       HTH_8  9 lIeaALer 16
                ++ +ALe+
  EHT97790.1 40 YLANALEE 47
                67889985 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
                HTTT-HHHHHHHHTS-HHHHHHHH CS
       HTH_8 16 rtgGnkskAArlLGisRrtLyrKL 39
                +++G +s+AA+  G+ R+++yr L
  EHT97790.1 66 EARGGISEAAKKSGLARQSIYRAL 89
                45678*****************98 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.4   3.5e+03       3      12 ..       8      17 ..       8      28 .. 0.81
   2 ?   12.0   0.0   6.7e-05      0.17      24      43 ..      71      90 ..      62      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.4
                --SS-HHHHG CS
       HTH_7  3 psklskndin 12
                +s++sknd+ 
  EHT97790.1  8 KSLISKNDYP 17
                7889999874 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.7e-05
                STTTSSSS---SSSS--SS- CS
       HTH_7 24 iskIAkevnisRsTvYRyla 43
                is+ Ak ++++R+++YR l+
  EHT97790.1 71 ISEAAKKSGLARQSIYRALS 90
                8889*************875 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   4.5e-05      0.12       5      33 ..      60      89 ..      58      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
      HTH_28  5 iikllaaGh.svreaArelgisrrtvyrWi 33
                +++++++ +  ++eaA++ g+ r+++yr +
  EHT97790.1 60 ALRQVIEARgGISEAAKKSGLARQSIYRAL 89
                67788854449****************986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00034      0.86       9      39 ..      61      89 ..      58      91 .. 0.88
   2 ?    1.0   0.1      0.15   3.7e+02      20      30 ..      99     109 ..      88     112 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00034
                HCT-CTTBSS-BHHHHHHHHTS-HHHHHHHH CS
    HTH_IclR  9 LdalaeapqeltlselArrtglpkStvhRlL 39
                L+++ ea+++  +se A+++gl++ + +R L
  EHT97790.1 61 LRQVIEARGG--ISEAAKKSGLARQSIYRAL 89
                7777888886..****************988 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
                 BHHHHHHHHTS CS
    HTH_IclR  20 tlselArrtgl 30 
                 tl++lA+ +gl
  EHT97790.1  99 TLAQLAAVAGL 109
                 78899988887 PP

>> Spindle_Spc25  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.1e-05      0.21      39      70 ..      32      63 ..      11      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.1e-05
  Spindle_Spc25 39 csPkLedeeleelleeLnetndlgkFlkevRk 70
                    +P   ++ l+  lee ne++ lg+Fl+++R+
     EHT97790.1 32 ADPDYANAYLANALEEINESGGLGGFLVALRQ 63
                   5666677778999******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1030.11
//
Query:       EHT97791.1  [L=94]
Description: hypothetical protein CKS_5363 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-10   40.2   0.1    2.9e-10   40.0   0.1    1.2  1  HTH_37          Helix-turn-helix domain
    2.8e-10   40.1   0.0    4.5e-10   39.4   0.0    1.4  1  HTH_3           Helix-turn-helix
    8.3e-09   35.7   0.1    1.1e-08   35.2   0.1    1.2  1  HTH_31          Helix-turn-helix domain
      2e-05   24.5   0.0    3.8e-05   23.6   0.0    1.4  1  HTH_19          Helix-turn-helix domain
    0.00036   20.4   0.1    0.00054   19.8   0.1    1.4  1  MarR_2          MarR family
    0.00043   19.7   0.0     0.0012   18.3   0.0    1.7  2  Sigma70_r4      Sigma-70, region 4
    0.00059   19.3   0.0     0.0012   18.4   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0015   18.9   0.0     0.0039   17.6   0.0    1.6  2  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0054   16.7   0.3      0.015   15.2   0.1    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.018   14.9   0.0    1.3  1  MarR            MarR family
       0.03   14.1   0.0      0.075   12.9   0.0    1.8  1  HTH_23          Homeodomain-like domain
      0.035   14.0   0.1      0.074   12.9   0.1    1.6  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.065   13.5   0.1       0.13   12.5   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.08   12.5   0.0      0.084   12.4   0.0    1.1  1  Peptidase_S41   Peptidase family S41
        0.1   12.4   0.0       0.18   11.6   0.0    1.5  1  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   2.4e-13   2.9e-10      22      79 ..      36      93 ..      10      94 .] 0.88

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2.4e-13
                H.HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEEEEE CS
      HTH_37 22 a.iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkveivv 79
                a + +l++  ++  +++a+++gi+qP vs+l+r + s+ s+++L ++++a G  ++iv+
  EHT97791.1 36 AlLFDLRRNAGINSTQVAERMGITQPAVSKLER-NASKASVSTLERYAAACGASIKIVM 93
                358899999***********************9.***********************97 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   3.7e-13   4.5e-10       4      52 ..      41      89 ..      38      92 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 3.7e-13
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52
                lR  +g+  +++Ae++G+++ ++s++E++ ++ s++tl+++a a+g s+
  EHT97791.1 41 LRRNAGINSTQVAERMGITQPAVSKLERNASKASVSTLERYAAACGASI 89
                8999*****************************************9876 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   9.6e-12   1.1e-08       5      57 ..      37      88 ..      33      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 9.6e-12
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                lL +lR+ aG+  ++vAer g+++  +s+lE+ +    s ++le++a a+g++
  EHT97791.1 37 LLFDLRRNAGINSTQVAERMGITQPAVSKLERNAS-KASVSTLERYAAACGAS 88
                6778*******************************.6**************96 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.2e-08   3.8e-05       6      55 ..      40      88 ..      36      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.2e-08
      HTH_19  6 eaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid 55
                 +R+++g++  ++aer gi++   s++E + + ++s ++l ++a a+g +
  EHT97791.1 40 DLRRNAGINSTQVAERMGITQPAVSKLERNAS-KASVSTLERYAAACGAS 88
                58****************************88.9*************976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.5e-07   0.00054      10      48 ..      37      73 ..      32      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.5e-07
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaa 48
                +L+ L+r+ g  ++ +++a+r+g++++avs++ + +++a
  EHT97791.1 37 LLFDLRRNAG--INSTQVAERMGITQPAVSKLERNASKA 73
                6777******..******************997777765 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     1e-06    0.0012       9      44 ..      35      70 ..      32      73 .. 0.89
   2 ?   -0.6   0.0      0.79   9.4e+02      33      44 ..      71      82 ..      69      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1e-06
                HHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHH CS
  Sigma70_r4  9 erevlelrfgeglTleEIgerlgiSrerVrqiekrA 44
                +   + lr+  g +  +++er+gi++ +V+ +e++A
  EHT97791.1 35 QALLFDLRRNAGINSTQVAERMGITQPAVSKLERNA 70
                6667889999999*********************99 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.79
                -HHHHHHHHHHH CS
  Sigma70_r4 33 SrerVrqiekrA 44
                S+  V+ +e++A
  EHT97791.1 71 SKASVSTLERYA 82
                778899***998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.9e-07    0.0012       9      36 ..      38      65 ..      35      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.9e-07
      HTH_24  9 LelLqknprisqreLAerlglSpstvnr 36
                L  L++n++i+ +++Aer g+++++v++
  EHT97791.1 38 LFDLRRNAGINSTQVAERMGITQPAVSK 65
                56699*********************85 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.5     3e+03       7      34 ..       2      29 ..       1      37 [. 0.64
   2 !   17.6   0.0   3.3e-06    0.0039       7      51 ..      43      86 ..      38      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.5
      HTH_26  7 adrgitkseLargtgisaatlsrlvkgk 34
                + +gi +se+  ++  + + ++ ++ +k
  EHT97791.1  2 KVKGIPYSEVKAKALQNPDVMAAYLAEK 29
                5566777777666666666666666655 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.3e-06
      HTH_26  7 adrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLg 51
                +  gi+++++a++ gi+++ +s+l  +  +  s +tL++ ++a g
  EHT97791.1 43 RNAGINSTQVAERMGITQPAVSKLERNA-SKASVSTLERYAAACG 86
                6789***********************5.89*******9998866 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.66   7.9e+02      38      53 ..      31      47 ..      29      51 .. 0.71
   2 !   15.2   0.1   1.3e-05     0.015      15      32 ..      48      65 ..      34      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.66
                HHHHTS-SEE.ESSSEE CS
       HTH_1 38 EeelgvpLfe.Rtgrgl 53
                Eeel++ Lf+ R + g+
  EHT97791.1 31 EEELQALLFDlRRNAGI 47
                8999999**96434455 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.3e-05
                SHHHHHHHHTS-HHHHHH CS
       HTH_1 15 sftrAAeeLglsqpavsr 32
                + t+ Ae++g++qpavs+
  EHT97791.1 48 NSTQVAERMGITQPAVSK 65
                6799*************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.5e-05     0.018       8      36 ..      37      65 ..      34      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHH CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtr 36
                +L+ l+++ +++ ++ a+++g+++++v++
  EHT97791.1 37 LLFDLRRNAGINSTQVAERMGITQPAVSK 65
                899************************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.3e-05     0.075       4      40 ..      32      69 ..      29      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
      HTH_23  4 ereRlrillllae.GlsvreIAreLgvsrrTvyrwlkr 40
                e+  ++   l ++ G++ +++A+++g+++  v++  + 
  EHT97791.1 32 EELQALLFDLRRNaGINSTQVAERMGITQPAVSKLERN 69
                45555566666669******************998665 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.2e-05     0.074      11      45 ..      49      80 ..      44      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
  YdaS_antitoxin 11 qkaLAealgvsqqaVsqWlkgkkqvpaervpeIek 45
                     +++Ae+ g++q+aVs++   +++++   v ++e+
      EHT97791.1 49 STQVAERMGITQPAVSKL---ERNASKASVSTLER 80
                    6789*************9...46666666666665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.13       2      41 ..      26      65 ..      25      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                    --HHHHHHHHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHH CS
  Fe_dep_repress  2 LvestEdYLetIYtlseekkvvktkdlaerLnvspssVse 41
                    L e++E+ L++++     ++ +  +++aer+++  + Vs+
      EHT97791.1 26 LAEKKEEELQALLFDLRRNAGINSTQVAERMGITQPAVSK 65
                    567777778776655557888999**************98 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.1e-05     0.084      14      62 ..      18      66 ..       6      91 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
                   HHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEE CS
  Peptidase_S41 14 tkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddgliv 62
                   + + +a  l+e k++++++l  DlR+N G + ++++e ++  ++   ++
     EHT97791.1 18 NPDVMAAYLAEKKEEELQALLFDLRRNAGINSTQVAERMGITQPAVSKL 66
                   56778999999999***************88888887766666544444 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.18      23      48 ..      46      71 ..      38      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      HTH_10 23 rvtlkeLAkelGIskstlsehLrkae 48
                 +++ ++A+++GI+++++s+  r+a 
  EHT97791.1 46 GINSTQVAERMGITQPAVSKLERNAS 71
                467789************99888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 703.07
//
Query:       EHT97792.1  [L=81]
Description: DnaJ-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-10   39.5   0.0      6e-10   39.1   0.0    1.4  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.4e-14     6e-10       5      54 ..       9      55 ..       5      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.4e-14
                HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHT CS
        DnaJ  5 iLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLs 54
                + g+s + +e +Ik+aY+k alkyHPD+n   p  +e  k +n+A+++ +
  EHT97792.1  9 VFGLSGELTEMDIKAAYKKAALKYHPDRN---PLGAELMKAVNAAFDFIM 55
                789999***********************...988899999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 613.46
//
Query:       EHT97793.1  [L=60]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-17   61.1   0.1    8.2e-17   61.0   0.1    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   4.6e-21   8.2e-17      49     100 ..       1      51 [.       1      52 [. 0.96

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 4.6e-21
   TnpB_IS66  49 iLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 +L+ d++G++l++krLe+grF wp  +++++v+lt++ql++LleG+++++++
  EHT97793.1   1 MLWADRDGLCLFTKRLERGRFVWPL-TRDGKVHLTPAQLSMLLEGINWKHPQ 51 
                 69**********************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 483.70
//
Query:       EHT97794.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-98  328.2   3.0      1e-97  327.0   0.0    2.0  2  DDE_Tnp_IS66    Transposase IS66 family
    5.6e-17   61.7   0.0    2.1e-16   59.8   0.0    2.1  1  DDE_Tnp_IS66_C  IS66 C-terminal element
    8.4e-15   54.9   2.3    2.2e-14   53.6   2.3    1.8  1  zf-IS66         zinc-finger binding domain of transposase IS6
    2.6e-12   47.3   6.0    5.7e-12   46.2   6.0    1.6  1  LZ_Tnp_IS66     Transposase C of IS166 homeodomain
     0.0089   16.3   1.2      0.017   15.4   1.2    1.4  1  Troponin        Troponin
  ------ inclusion threshold ------
      0.026   14.4   0.3      0.076   12.9   0.3    1.8  1  Shugoshin_N     Shugoshin N-terminal coiled-coil region
      0.026   14.3   5.1      0.042   13.6   5.1    1.2  1  FAM184          Family with sequence similarity 184, A and B
      0.068   13.5   2.9       0.15   12.4   1.1    2.3  2  Csm1_N          Csm1 N-terminal domain
       0.13   12.0   0.9       0.52   10.0   0.5    2.0  2  LXG             LXG domain of WXG superfamily
       0.16   11.5   4.9       0.17   11.5   3.2    1.8  2  HAUS-augmin3    HAUS augmin-like complex subunit 3
       0.17   12.0   2.9        1.6    8.8   0.1    2.8  2  DUF1192         Protein of unknown function (DUF1192)
       0.24   10.9   1.1       0.75    9.3   0.3    1.9  2  Exonuc_VII_L    Exonuclease VII, large subunit
       0.28    9.7   9.2      0.038   12.5   4.7    1.8  2  FUSC            Fusaric acid resistance protein family
        0.9    9.3   9.7        1.5    8.6   9.7    1.2  1  ERM             Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.9      0.16   2.1e+02     167     213 ..      34      81 ..      19     124 .. 0.57
   2 !  327.0   0.0  8.1e-101     1e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.16
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea.eaeerlalrqeesrpllaeleaw 213
                   sq++a   ++i++l+a+ ++++++   +  ++lr++++r++ ++ e+ 
    EHT97794.1  34 SQRVAAYTSEINRLKALVAKLQRMqFGKSSEKLREKTARQVCEAEERI 81 
                   566777777788888888888633322445555555555555444442 PP

  == domain 2  score: 327.0 bits;  conditional E-value: 8.1e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97794.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97794.1 284 DRnagsqlPPAVWFAYSPDRKGMHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHVRTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +ae+rla+r++++  l+++l++w+++q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags+ G+e
    EHT97794.1 380 GSPAEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDSGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.7e-19   2.1e-16       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.7e-19
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL +++d ++++++++LLPW
      EHT97794.1 479 SLIGTCRLNGVEPEAWLRYVLGHIQD-WSVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   2.3   1.7e-17   2.2e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.7e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l+ +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97794.1 128 ETACPACGGELSALGCD-VSEQLELISSAFKVIETQRPKLACCQCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   6.0   4.5e-15   5.7e-12       1      68 [.      46     121 ..      46     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 4.5e-15
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE.ltardpeQleL...aleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE l+++++ Q +     + +l++e aev  +    + +++ r++  RkpLpa+LPRe+
   EHT97794.1  46 RLKALVAKLQRMQFGKSSEkLREKTARQVCEaeeRIGALQEEMAEVLGEqhdpVLPQPLRQSSARKPLPATLPRET 121
                  79*****************966777777777555667888888888888999999*******************97 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.2   1.3e-05     0.017      46     110 ..       9      76 ..       3      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH..H CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade..k 110
                 ++ l++l ++ +  i++l+e    + + va  + ei+ lk  v +l+ + f+k + K   kta++  +
  EHT97794.1   9 NARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMqFGKSSEKLREKTARQvcE 76 
                 479*******************************************9999*******99999988441 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     6e-05     0.076       9      34 ..      23      48 ..      18      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
  Shugoshin_N  9 NreLAKsNsalslkirelekevseLl 34
                 +r+LA  N +ls+++  +++e+++L+
   EHT97794.1 23 IRQLAEYNRLLSQRVAAYTSEINRLK 48
                 69***********************8 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.1   3.3e-05     0.042     114     197 ..      10      97 ..       7     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyEe 197
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v +++e++ +l++e++++ +e+ +
  EHT97794.1  10 ARLRALLQEQQTTIrqlAEYNRLLSQRVAAYTSEINRLKALvAKLQRMQFGKSSEKLREKTARQVCEAEERIGALQEEMAEVLGEQHD 97 
                 678888888877775667778889**************9862678999***********************************99876 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   0.00012      0.15      22      56 ..      23      57 ..      16      73 .. 0.80
   2 ?   -0.6   0.1       1.3   1.7e+03      34      53 ..      72      91 ..      68      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + +l + N++Lsq++  ++ ei++Lk+ +a+l+  
  EHT97794.1 23 IRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRM 57
                6777888************************9864 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
      Csm1_N 34 qkletkdqeiesLkeqlael 53
                +++   +++i +L+e++ae+
  EHT97794.1 72 RQVCEAEERIGALQEEMAEV 91
                56667789999999999876 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5    0.0004      0.52     152     193 ..      17      58 ..       8      65 .. 0.87
   2 ?   -0.3   0.0      0.58   7.5e+02      98     141 ..      64     107 ..      62     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti++l ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97794.1  17 QEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.58
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvsdivslpeldds 141
                 ++L++  ++++ +a+e + +l++e+ ++l +  d v  ++l  s
  EHT97794.1  64 EKLREKTARQVCEAEERIGALQEEMAEVLGEQHDPVLPQPLRQS 107
                 6788888899999***************9999998877777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.2   0.00013      0.17      68     152 ..      11      97 ..       2     112 .. 0.88
   2 ?   -1.9   0.0       1.5   1.9e+03     133     166 ..     384     417 ..     376     434 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  HAUS-augmin3  68 llevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                    l++ l+e+++++++L++  + L +  a  +++ n+L++++a+lq+ +  ++ e+  +++++++ ea+e ++a   e+ +vL ++ +
    EHT97794.1  11 RLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQfgKSSEKLREKTARQVCEAEERIGALQEEMAEVLGEQHD 97 
                   45677889999999**99999999999*****************98874477888899************************98766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
  HAUS-augmin3 133 qeelraenaetnavLqqlteeakqlaeyfeeaek 166
                   ++ l+++ a+t a++q+l +  +++++ ++  + 
    EHT97794.1 384 EDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSD 417
                   6778889999999999999988888888887664 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0012       1.6      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    2.2   0.4      0.15   1.9e+02      24      37 ..      76      89 ..      73      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+ ++EI Rl+a +ak
  EHT97794.1 33 LSQRVAAYTSEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
     DUF1192 24 ELeerIalLeaEIa 37
                E eerI +L++E a
  EHT97794.1 76 EAEERIGALQEEMA 89
                779*********87 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00059      0.75     144     229 ..      11      96 ..       5     189 .. 0.67
   2 ?   -0.1   0.0      0.42   5.4e+02     125     177 ..     351     415 ..     348     452 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00059
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerlkekleekk 229
                   +l++ l+e++  +++ ++ + +  +qr+ +++s++++ ++l+++  r ++ + +e+l++++++q+ +++er+  l+e++ e l e++
    EHT97794.1  11 RLRALLQEQQTTIRQLAE-YNRLLSQRVAAYTSEINRLKALVAKLqRMQFGKSSEKLREKTARQVCEAEERIGALQEEMAEVLGEQH 96 
                   444445555555444443.33445677888888888777755543388888889999999999999999999999988743333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.42
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............eeqleelerrlekaikrlleekkqrleklasr 177
                   d+ + TPt +   +++++ +l            e++l+  ++r+   +++l +  +++++ l+++
    EHT97794.1 351 DVHVRTPTDITTEALKRIGKLyaieaeirgspaEDRLAVRKARTVALMQSLYDWIQSQMKVLSRH 415
                   77889999999999988877777777777777755555555555555555554444443333333 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.7     3e-05     0.038     212     295 ..       4      96 ..       1     140 [. 0.79
   2 ?   -1.9   0.1      0.69   8.9e+02     217     264 ..     383     430 ..     340     456 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
        FUSC 212 prirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale......a 295
                 +  ++++++lr+ll+++++ +++l ++ rll +  a+ + +   l+al+a+l+++    +++++ e+++ ++ + ++r+ al+++ +      +
  EHT97794.1   4 S-PPDENARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMqfgkSSEKLREKTARQVCEAEERIGALQEEMAevlgeqH 96 
                 3.4899***********************************999***********999977778888888888888888888887765544440 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.69
        FUSC 217 raralrrllsrmlallall.sslarllarlraeeaaavpelaallaela 264
                 + ++l+   +r++al+++l + ++++++ l++++++a +++a ll++ +
  EHT97794.1 383 AEDRLAVRKARTVALMQSLyDWIQSQMKVLSRHSDTA-KAFAYLLKQWD 430
                 3334444444444444333033444444444444433.33555555544 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.7    0.0012       1.5      20     100 ..       8      90 ..       6      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
         ERM  20 eaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 e ++ ++ L+e++ t+++Lae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++ eae+++  l+ee+ +
  EHT97794.1   8 ENARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQfgKSSEKLREKTARQVCEAEERIGALQEEMAE 90 
                 66777889**********************************999999887335577788*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      903  (0.0503653); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 3964.49
//
Query:       EHT97795.1  [L=72]
Description: hypothetical protein CKS_5511 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-08   32.8   1.1    8.1e-08   32.1   1.1    1.3  1  DUF1471   Protein of unknown function (DUF1471)
     0.0072   16.8   1.0      0.008   16.6   1.0    1.1  1  DUF4179   Domain of unknown function (DUF4179)
  ------ inclusion threshold ------
      0.032   14.2   1.1      0.038   14.0   1.1    1.1  1  PepSY_2   Peptidase propeptide and YPEB domain
       0.07   13.3   0.1      0.091   12.9   0.1    1.2  1  TcpQ      Toxin co-regulated pilus biosynthesis protein Q


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   1.1   1.8e-11   8.1e-08       5      56 .]      26      72 .]      24      72 .] 0.93

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.8e-11
                EEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  5 gtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                +t+s++  + +++ +  +++++A+++G  ++ ++sa++  ++  h+tAelYK
  EHT97795.1 26 ETVSAT--SLTLDGAVSKIARQAKQQG-EHFKVISADT--NNYAHVTAELYK 72
                678888..9**************9997.9*********..999********9 PP

>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.0   1.8e-06     0.008       5      51 ..       3      60 ..       1      69 [. 0.64

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.--SS-HHHHT--SS-............H CS
     DUF4179  5 rikkvaaaaaalvllllssrllspalAsalnpvigslfeklsdskg............e 51
                + k   aaaa++++l+++++++ ++++++   +++++++k+  + +             
  EHT97795.1  3 INKVSSAAAAVALTLMSFGCFAAETVSATS-LTLDGAVSKIARQAKqqgehfkvisadT 60
                456677888888888899999999999888.6666666666555553333444444444 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.1   8.4e-06     0.038       2      57 ..       9      63 ..       8      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.4e-06
     PepSY_2  2 aalalalallaaaAlAgrrdtdspkadwlpreklvakleaqGykvkkievddggcy 57
                aa+a+al+l++   +A+++ + +  + +   +k+ +++++qG + k i +d +  y
  EHT97795.1  9 AAAAVALTLMSFGCFAAETVSATSLTLDGAVSKIARQAKQQGEHFKVISADTN-NY 63
                799*************99999999999999********************555.45 PP

>> TcpQ  Toxin co-regulated pilus biosynthesis protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05     0.091      44      79 ..      33      68 ..      23      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
        TcpQ 44 gdfedavsqvlealaaagkplkatfysknrvlrVte 79
                 +++ avs++ ++++++g ++k+   ++n+ ++Vt+
  EHT97795.1 33 LTLDGAVSKIARQAKQQGEHFKVISADTNNYAHVTA 68
                57788*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 575.48
//
Query:       EHT97796.1  [L=328]
Description: hypothetical protein CKS_0808 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2579.08
//
Query:       EHT97797.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97797.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97797.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97797.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97797.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 774.95
//
Query:       EHT97798.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97798.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 909.13
//
Query:       EHT97799.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-97  326.7   3.8    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      3e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   8.7    1.9e-10   41.4   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.023   14.5   5.9      0.036   13.8   5.9    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.028   13.6   1.5      0.054   12.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   12.9   6.3      0.048   12.2   6.3    1.3  1  FUSC             Fusaric acid resistance protein family
      0.032   14.6   4.4       0.12   12.8   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.044   13.0   0.5      0.074   12.2   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.096   12.2   2.0       0.12   11.9   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.14   11.9   9.9       0.23   11.2   9.9    1.2  1  ERM              Ezrin/radixin/moesin family
       0.17   11.8   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.19   12.1   3.0       0.49   10.7   3.0    1.7  1  HalX             HalX domain
       0.29   10.8   2.3        1.1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
          1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        4.2    6.9   7.3        9.3    5.7   7.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        6.1    7.5   8.3        8.1    7.1   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4      0.13   1.3e+02     167     217 ..      34      87 ..      22     121 .. 0.45
   2 !  325.1   0.0    4e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeq 217
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+
    EHT97799.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEE 87 
                   45566566667777776666643113332233333333333333333322.1111 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97799.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97799.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97799.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.4e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.4e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97799.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.6e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97799.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.7     2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97799.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.9   3.9e-05     0.036     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97799.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.5   5.7e-05     0.054      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97799.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.3   5.1e-05     0.048     213     294 ..       4      89 ..       1     120 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97799.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   0.00012      0.12      22      55 ..      23      56 ..      12      71 .. 0.82
   2 ?    2.8   0.5      0.16   1.5e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHT97799.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888899************************985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97799.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   7.8e-05     0.074      24      76 ..      37      91 ..      33     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97799.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEV 91
                578***************8777443335566677788888999********9986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00013      0.12     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.3   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97799.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   3344444555555556666666778999999999998888665543889999999****9999************999844.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97799.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.9   0.00024      0.23      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97799.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.1e+03      26      54 ..      16      44 ..       9      62 .. 0.79
   2 ?    3.1   0.0     0.092        87      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.022        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97799.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.092
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97799.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97799.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.0   0.00052      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT97799.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0011       1.1     152     191 ..      17      56 ..       5      65 .. 0.86
   2 ?    1.7   0.1      0.19   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHT97799.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97799.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.5   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97799.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97799.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4   0.00097      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00097
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97799.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0042         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.085        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97799.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.085
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97799.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.3    0.0098       9.3      70     152 ..      13      97 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97799.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666677777888888888888888885542278888999************************98766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0086       8.1      22      53 ..      12      43 ..       8      50 .. 0.87
   2 ?    3.2   0.8      0.15   1.4e+02      34      57 ..      68      91 ..      62     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97799.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677899********************887665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97799.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                     1020  (0.0568911); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 3419.56
//
Query:       EHT97800.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97800.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97800.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97800.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97800.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97800.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97800.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97800.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97800.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97800.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97800.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97800.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97800.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97800.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97800.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97800.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97800.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97800.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2327.80
//
Query:       EHT97801.1  [L=235]
Description: VirB5 family type IV secretion complex minor pilin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-47  161.8   9.3    3.4e-47  161.4   9.3    1.1  1  T4SS             Type IV secretion system proteins
  ------ inclusion threshold ------
      0.013   15.6   0.5      0.045   13.8   0.1    1.9  2  Peptidase_M16_C  Peptidase M16 inactive domain
       0.21   11.9   3.5         14    6.0   2.4    2.7  2  DUF948           Bacterial protein of unknown function (DUF94
        0.4   10.9   8.9        2.1    8.6   3.0    2.8  2  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
          1   10.0   8.7       0.76   10.4   0.2    2.7  2  DUF5344          Family of unknown function (DUF5344)


Domain annotation for each model (and alignments):
>> T4SS  Type IV secretion system proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   9.3   9.5e-51   3.4e-47       1     195 [.      22     215 ..      22     216 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 9.5e-51
        T4SS   1 GIPV.iDaaai..aqaikqvkeaaqqltqlkqqleqakqqlesltgarglrdvgalLndpk.lrkllPaewqdvkdlvksgga......sgslssaaqs 89 
                 GIPV +Da+ +  a+++k+++++ q+ +++k+q++++k+ql   ++a+g+rd++++++++k l++       d+++l+k+g++      sg+ s+++++
  EHT97801.1  22 GIPVlVDADPLreAEWMKEAQQWLQTAEHYKDQIQAYKSQL---ATATGVRDIADFVDQAKsLKS-------DLETLRKPGQSlndlllSGGSSGQFDA 110
                 9***999998844678999**********************...*****************9999.......*********99**************** PP

        T4SS  90 lrdknkvydvcalltskeqas.kaceqaankaaqdkalaeqaydkankrlkqiqkLadqinnatDpKeiaDLqaRiqaeqallqneqiqlqllqklaea 187
                 l++k+k++d+c  ++ +++++ + c+q+++++a + +++++++++++++l +i++L+++++ a+D+Ke++DL++ iq+++++l++ ++q++++ k+ae+
  EHT97801.1 111 LYEKYKIFDTC--NSGQSGSYaNVCKQQVINKALQLEQTDEIQNQVSQTLGEINTLSNRVAMAKDSKESQDLANSIQLKTVMLNTLTTQWEMSVKSAEK 207
                 ***********..678888889***************************************************************************** PP

        T4SS 188 eeklaeqr 195
                 +ek++e++
  EHT97801.1 208 REKVLEDE 215
                 ***99865 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.2e-05     0.045      98     165 ..      91     160 ..      77     173 .. 0.84
   2 ?   -0.7   0.0      0.35   1.2e+03     119     169 ..     175     226 ..     169     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                      HHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEES.SCEEEEEEEEEECTTHHHHHHHHHHHHHH CS
  Peptidase_M16_C  98 alavlntlLgggmesrLytnlrekeglaysvsaf.ndsyr.dsglfgisatadpenveevvevilkelrk 165
                      + + ln+lL++g +s  +++l ek  +++ ++++ + sy  ++   +i+  ++ e+++e+ + + ++l +
       EHT97801.1  91 PGQSLNDLLLSGGSSGQFDALYEKYKIFDTCNSGqSGSYAnVCKQQVINKALQLEQTDEIQNQVSQTLGE 160
                      6689******************************888888988888888777777888877777776655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.35
                      HTTTTSESEEEEE.EEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHH CS
  Peptidase_M16_C 119 rekeglaysvsaf.ndsyrdsglfgisatadpenveevvevilkelrklkke 169
                      +e++ la s+++  ++ ++ ++ + +s+++  ++   +++  +k++r+ +++
       EHT97801.1 175 KESQDLANSIQLKtVMLNTLTTQWEMSVKSAEKREKVLEDERFKQWRQQQSN 226
                      6788899999999888888999999999999776666777777777766655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015        55       4      74 ..       8      85 ..       7      99 .. 0.53
   2 ?    6.0   2.4    0.0038        14      40      65 ..     145     170 ..     133     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.015
      DUF948  4 lIaAiAFvv.Lviflivvllkl.....kktldeaaatieele...kqvdpilkevedllakvnelledvneklekvdplt 74
                lI+A A++  L+   i+vl+ +     ++ ++ea++ +++ e   +q++++  ++++++  v++  +d  ++ +++++  
  EHT97801.1  8 LILACAIASpLAHAGIPVLVDAdplreAEWMKEAQQWLQTAEhykDQIQAYKSQLATATG-VRD-IADFVDQAKSLKSDL 85
                677777764377777888888888888555555555444444222666666666554432.333.244444444444444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0038
      DUF948  40 kqvdpilkevedllakvnelledvne 65 
                 +q+d+i ++v ++l ++n+l + v  
  EHT97801.1 145 EQTDEIQNQVSQTLGEINTLSNRVAM 170
                 57777777777777777775555543 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3      0.01        37      37      86 ..      40      88 ..      33     100 .. 0.53
   2 ?    8.6   3.0   0.00058       2.1      34      78 ..     144     185 ..     133     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.01
                  HHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHH CS
  Seryl_tRNA_N 37 krrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkal 86
                  + +++ +++e  + +  +   + + a     d+++ ++++k+lk +l++l
    EHT97801.1 40 EAQQWLQTAEHYKDQIQAYKSQLATATGV-RDIADFVDQAKSLKSDLETL 88
                  33444444444444444444444444444.36666666666666666665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00058
                   HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHH CS
  Seryl_tRNA_N  34 ldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevke 78 
                   l e+  e+q+++ +   e N+ls+ +++ak++k + ++l ++  +
    EHT97801.1 144 L-EQTDEIQNQVSQTLGEINTLSNRVAMAKDSK-ESQDLANS-IQ 185
                   4.456899***********************98.44444433.33 PP

>> DUF5344  Family of unknown function (DUF5344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00021      0.76      16      57 ..      49      90 ..      38      96 .. 0.89
   2 ?    1.7   3.7      0.11   3.9e+02      10      61 ..     149     200 ..     140     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
     DUF5344 16 selktaaeelktsipetisgknsldvvekineleeeleellk 57
                +++k+++++ k+++++ ++ +   d+v+++++l+++le+l+k
  EHT97801.1 49 EHYKDQIQAYKSQLATATGVRDIADFVDQAKSLKSDLETLRK 90
                678999********************************9986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
     DUF5344  10 eVeqkLselktaaeelktsipetisgknsldvvekineleeeleellkaYkt 61 
                 e+++++s+    ++ l+  ++   ++k+s d  ++i+     l++l+++ + 
  EHT97801.1 149 EIQNQVSQTLGEINTLSNRVAMAKDSKESQDLANSIQLKTVMLNTLTTQWEM 200
                 5555555555555555555566666666778888888888888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1792  (0.0999498); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1773.38
//
Query:       EHT97802.1  [L=912]
Description: VirB4 family type IV secretion complex ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-43  147.6   0.0    1.1e-42  146.5   0.0    1.6  1  CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV
    9.4e-13   48.2   4.5    2.3e-12   47.0   4.5    1.6  1  VirB3           Type IV secretory pathway, VirB3-like protein
      0.005   15.8   0.0       0.52    9.1   0.0    2.2  2  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.051   13.3   0.0    1.8  2  AAA_15          AAA ATPase domain
      0.024   15.1   0.0       0.33   11.4   0.0    2.3  2  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV transporter system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   3.1e-46   1.1e-42       3     206 .]     269     470 ..     267     470 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 3.1e-46
  CagE_TrbE_VirB   3 LsereerellfselleflnflinGenepvklpsgsmlldeliatskvpfgkdkfiirtakdekfasilsikeYpeetrsslldsllsldieliit 97 
                     L++++e +++fs++l f++ l++ ++ +v++ + + + d + a + ++f+ +  +i++a+ +++++ l++ke++eet+ +++dsll++++ +iit
      EHT97802.1 269 LGTFTEGNAVFSSQLAFYEYLLTRRWRKVRVTRTPAY-DVMGA-AALFFSAESGQINHANGTQYFRGLEVKEFSEETATGMMDSLLYAPCDYIIT 361
                     78999999**************************777.66666.*************************************************** PP

  CagE_TrbE_VirB  98 esfskiskqkalsklkkkqsrllsiedkaksqiteledlidevasgdvalGayhlslvlfaedkekLdkavseatkllnakGivavketigmepa 192
                     +s+  +s+++a++ +k+ ++ lls++d+a+sq  +l+ ++d ++sg +a+G++h s++++ ++ e L + + e++++ln+ Gi  v ++i++ +a
      EHT97802.1 362 QSYTCMSREEAKKAIKRTRRLLLSADDDAVSQRLDLDVALDLLTSGKIAYGKHHFSIMVYSPSLESLVADTNEISNALNNIGITPVPAEISLSAA 456
                     ****************999999************************************************************************* PP

  CagE_TrbE_VirB 193 FfsqlPgnirlnvR 206
                     + +qlPgn++l++R
      EHT97802.1 457 YMAQLPGNYNLRPR 470
                     ***********998 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   4.5   6.3e-16   2.3e-12       4      80 ..       3      79 ..       2      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 6.3e-16
       VirB3  4 plfkaltRpamllGvplelvllnllvsvilflvglslwillllvplhlvlrliakrDpqmfrvlllrlktrlrlr.nr 80
                +l ka+ Rpa l+Gvp++++l++ +v++i+++ +  +++l  l++ +lv+  +++++p++f+++ ++l+ +++   nr
  EHT97802.1  3 KLLKAMKRPAALWGVPMVPLLAVTGVTIIVAI-WTTIAFLAFLPLEFLVMKSLTRKEPMRFNLIAVWLRAKGKPVaNR 79
                6889****************************.99999999999*************************999876445 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0046        17      16      35 ..     533     552 ..     528     564 .. 0.76
   2 !    9.1   0.0   0.00015      0.52     242     318 ..     747     824 ..     737     834 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0046
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekl 35 
                    + + i+Gt GsGKt  ++ l
     EHT97802.1 533 ASTCILGTNGSGKTMLMTYL 552
                    5689**********987644 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
  TrwB_AAD_bind 242 errlWfflDElpaLgrleelksl....laegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvsdaetAeel 318
                     rrl  f+DE+ +  r + +k++    l+++Rk  g +v+g qs a + +    d a ++++ ++t+++++ ++a+ A+++
     EHT97802.1 747 GRRLVIFMDEFWKWLRDPVFKDFaynkLKTIRKLNGMLVVGTQSPAEIIK---DDIAPAVIEQCGTQILAANPNADRAHYV 824
                    589999*****9999888887643333899***************97765...89*******************9999886 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3   4.5e+03     105     151 ..     333     379 ..     311     393 .. 0.76
   2 ?   13.3   0.0   1.4e-05     0.051      21      50 ..     527     559 ..     523     611 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
      AAA_15 105 dlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkek 151
                  l++k++++++ + + d  l+ ++++++++++++  ++++k+  k +
  EHT97802.1 333 GLEVKEFSEETATGMMDSLLYAPCDYIITQSYTCMSREEAKKAIKRT 379
                 45688889999999999999999999999999999999987776655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.4e-05
      AAA_15  21 lsee...ltvliGkNnsGKSsilealdlFlnnk 50 
                 ++e+    t++ G+N+sGK+ ++  l+++ ++ 
  EHT97802.1 527 FDEKnpaSTCILGTNGSGKTMLMTYLEIMQQKY 559
                 556566789********************9954 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.16   5.9e+02     119     183 ..     153     255 ..     143     264 .. 0.48
   2 ?   11.4   0.0   9.1e-05      0.33      18      38 ..     531     551 ..     520     647 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.16
      AAA_23 119 qfisellgskki...ilnlilflgqerfeefelkdkke...................................rleelekeleeledekkllekl.eqe 178
                 qf +++l+  ++    +++ ++++ +r+  fe++  k+                                    le++e++  + +++ k+l+   ++ 
  EHT97802.1 153 QFGTSQLHGLFRsfeGMPVTFYIHNDRN-TFEDSLHKDsgnlyadeisrlyyasvgvfrrnrlfltvcyrpfvSLEKAERKRMKDSQKLKELDGAlLEM 250
                 5544444433332336688888888884.3333222223445555555555555555555555555555555544444444444444444443332333 PP

      AAA_23 179 kekek 183
                 +e + 
  EHT97802.1 251 LEIKS 255
                 33333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9.1e-05
      AAA_23  18 skgltlItGpNGaGKTTildA 38 
                 ++  t+I G NG+GKT ++  
  EHT97802.1 531 NPASTCILGTNGSGKTMLMTY 551
                 5668************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6569.27
//
Query:       EHT97803.1  [L=101]
Description: VirB2 family type IV secretion complex major pilin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-20   72.2   4.3    3.5e-20   72.1   4.3    1.0  1  TrbC      TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   4.3   1.9e-24   3.5e-20       3      98 ..       6      98 ..       1      99 [. 0.94

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.9e-24
        TrbC  3 alkskarrlllalalalvllllaspalAqaaggdpvetvlqnivdfltgplakviatiaiivaGimlafgrlswrtlvmvviGiviifgAssivst 98
                +lk+  +r+++ +++ ++++l+aspa+A++   +p++tv+qni + l+g  a +++t+a++++G++ +++++s+++++ ++iG+++i+g+s++++ 
  EHT97803.1  6 TLKKFISRTSTHVMTSAISALAASPAFADGF--APANTVMQNIATGLHG-CAAITITVAVVWVGYKTLWNGDSLKSCGHIIIGGILIGGGSEFAAL 98
                667888999*******************998..9***************.******************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 793.67
//
Query:       EHT97804.1  [L=235]
Description: VirB1 family type IV secretion complex lytic transglycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-16   59.3   0.0    3.9e-16   58.8   0.0    1.2  1  SLT       Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   2.2e-20   3.9e-16       5     108 ..      11     146 ..       7     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 2.2e-20
                 HHHHHHTS-HHHHHHHHHHHHTT-TT-B-......TTS................................EBTTTTBETTTHHHHHHHHT-SHHHHCSH CS
         SLT   5 kaekkygvepsllaaiaqvESgfnpkAvs......ksg................................avGLmQimpstakrlglrvklsedelldP 65 
                 + +++ +v ps+ + +a+vESg+np+A+       +                                  +vGLmQi++ ++kr+      +  +l++P
  EHT97804.1  11 AMQCATTVHPSTSLDVARVESGYNPYAIAeivpehE-RkpgdknfithmpenkedavritnqieakgrrySVGLMQITSTNFKRYNV----TATDLFNP 104
                 678999***********************8887651.0566788899999999*******************************887....9******* PP

                 HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHHTTHSS CS
         SLT  66 eknisagakyLkslykqyngslllalaAYNaGegtvkkakkev 108
                 ++n+s+  k++ + y++++  l +al+ Y +G + ++++ + +
  EHT97804.1 105 CTNLSVFEKIITDCYQRGG-TLKRALSCYYSGNFSTGQQPEAA 146
                 *******************.**************999886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1981.12
//
Query:       EHT97805.1  [L=73]
Description: hypothetical protein CKS_0817 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 637.63
//
Query:       EHT97806.1  [L=98]
Description: hypothetical protein CKS_0818 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.1   1.9       0.22   10.8   1.9    1.1  1  LIX1      Limb expression 1


Domain annotation for each model (and alignments):
>> LIX1  Limb expression 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.9   1.2e-05      0.22     167     234 ..       3      71 ..       1      78 [. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.2e-05
        LIX1 167 LkalrerkCs.rqeviahysqralDddmrsqmaldWiareq.espgliaqelavaekeleearkagreLr 234
                 ++ +re++C  r   i+  s++++D  + s +  +W  re+ +    +++e +  ++e+++   ++  Lr
  EHT97806.1   3 MRKVREKQCRkRMATISRLSRKRVD-RVGSAIKANWTLREEpDFVRALREERQCIRAEITTITIRALGLR 71 
                 7889*****6367899999999998.58999******9998245688999999*****999888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 829.94
//
Query:       EHT97807.1  [L=153]
Description: putative RepA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-09   37.7   0.0    1.4e-09   37.6   0.0    1.1  1  IncFII_repA  IncFII RepA protein family


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0     8e-14   1.4e-09      79     190 ..       4     115 ..       1     147 [. 0.78

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8e-14
  IncFII_repA  79 llyhlniasglveasveqlsDeCGLstvskaGnksitrasrlitefleplGlvkCek.vWDkilesyiPkiitlteLffvLidvskeklksakkqqlg 175
                  + + l++   + +  +e lsD  GLst s+aGnks++ras      l  l ++  ek  ++   +    k i +te ff +++v  +++ + + + l+
   EHT97807.1   4 IFDDLDLRDWQTRHNLETLSDRAGLSTRSDAGNKSVSRASNGCDR-LVWLDAIITEKaAFNPYDARCACKHIEVTEDFFAILGVPLKQVYRERARLLK 100
                  5555666666677889*************************9998.66777777766257777788899*******************9999999999 PP

  IncFII_repA 176 WinkkLrekGekpit 190
                     +++++ G   + 
   EHT97807.1 101 ADPNEIISSGDVRLI 115
                  888888888865443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1171.19
//
Query:       EHT97808.1  [L=283]
Description: hypothetical protein CKS_0820 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-12   47.0   7.8      4e-12   46.4   7.8    1.2  1  FUSC_2    Fusaric acid resistance protein-like


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   7.8   2.2e-16     4e-12      34     125 ..       1      90 [.       1      91 [. 0.88

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 2.2e-16
      FUSC_2  34 travqRilGtvlGavlallllyllpgnlalallvfllvfliafflkrnyalafifltllalllyslaagsgnpieialhRlldvliGilial 125
                 +r+ +R lGt++G+v+a+++l l  ++  ++ ++++++f+ + f ++ y++ ++ +t++a+++++l   s n+ +++l Rlld+l+G+lia+
  EHT97808.1   1 MRIQHRALGTFAGLVIAAASLRLDVAEPLVLSIMLVITFISYRFTRQFYGWSMVGFTVTAVYTLQLL--SLNGAQFLLPRLLDTLMGCLIAF 90 
                 6888*****************98888755556777777777778889*******************6..788889***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2028.46
//
Query:       EHT97809.1  [L=406]
Description: acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-134  447.8   0.0   3.6e-134  447.5   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    1.2e-05   24.7   0.0    1.7e-05   24.2   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
      0.036   13.0   0.1       0.13   11.2   0.0    1.8  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.5   0.0    6e-138  3.6e-134      10     406 .]      25     400 ..      19     400 .. 0.98

  Alignments for each domain:
  == domain 1  score: 447.5 bits;  conditional E-value: 6e-138
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                   +v  k++G++++d++gk+y+D+ ++iav++lGh+hP++++ +k+q ++l+h+s +++tnepal+la kl++++    d+vf+ansG+eA+e+A+Kla
   EHT97809.1  25 QFVPVKGKGSRVWDQQGKEYIDFSGGIAVTALGHCHPALIETLKKQGETLWHTS-NVFTNEPALRLASKLINATFA--DRVFFANSGAEANEAAFKLA 119
                  57889*************************************************.*********************..******************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgeg 205
                  r ya++++++ k+kiiaf++afHGrtl+++ v+g+ +ky+++fgp ++++v+++++d                 l a++++++d+++A++vE+iqgeg
   EHT97809.1 120 RYYACKRHSPFKSKIIAFHNAFHGRTLFTVTVGGQ-PKYSDGFGPKPADIVHVPFND-----------------LAAVKAVIDDHTCAIVVETIQGEG 199
                  ***********************************.********************9.................9999999***************** PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacavala 303
                  Gv++a+pef+++lrelc+kh++ll+ DEvq+G+Gr+GklfA+eh+gv+pD++t+aKal+gG+p+sa+l+t+ev++++apg hg+T+gGnplaca+a  
   EHT97809.1 200 GVMPATPEFMQGLRELCDKHQALLVLDEVQSGMGRSGKLFAYEHYGVTPDILTSAKALGGGFPVSAMLTTEEVASTMAPGVHGTTYGGNPLACAIAET 297
                  ************************************************************************************************** PP

                  HHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHH CS
  Aminotran_3 304 vleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidellei 401
                  +l++i++ ++l+ ++  ++++ e+L++++++y+ ++++RgkGl+i++ lk ++  k+++il++a ++Gv++l aG +v+r++p+lii+ ++i+e++ +
   EHT97809.1 298 ALDLINTPDVLNGVESRRQQFVEALKAIDARYDLFSDIRGKGLLIGAALKPQHAGKSRDILNAAAAEGVMVLVAGTDVMRFAPSLIIEPADIEEGMAR 395
                  ******************************************************999***************************************** PP

                  HHHHH CS
  Aminotran_3 402 lkkal 406
                  + ka+
   EHT97809.1 396 FAKAV 400
                  *9985 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.8e-09   1.7e-05     105     296 ..     156     326 ..     104     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.8e-09
                    HHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B-.-HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSH CS
  Aminotran_1_2 105 syknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtva.tleeleklldlakkynlllfvDeaYagfvfgsld 199
                     y++++    + +v +p        +dl a+++ +++       t+ i+ve+++   G+++ t+e  + l +l++k+ +ll++De+ +g+    + 
     EHT97809.1 156 KYSDGFGPKPADIVHVP-------FNDLAAVKAVIDD------HTCAIVVETIQGEGGVMPaTPEFMQGLRELCDKHQALLVLDEVQSGMGRSGKL 238
                    56777777778899999.......89***********......99**************972555567799********************99885 PP

                    THHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 200 avatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLae 294
                    ++  + +v +++      + +Ka+G  G+ v + l +++v+s+++  + + ++  ++l+ a+a+ + d      ++ +    +++rr++++++L++
     EHT97809.1 239 FAYEHYGVTPDIL-----TSAKALG-GGFPVSAMLTTEEVASTMAPGVHGTTYgGNPLACAIAETALDLI----NTPDVLNGVESRRQQFVEALKA 324
                    5555999999877.....99****9.59999*************99998877766666666666666644....8999999999*********998 PP

                    ST CS
  Aminotran_1_2 295 lg 296
                    ++
     EHT97809.1 325 ID 326
                    85 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.2e-05      0.13      54     182 ..      92     233 ..      84     241 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.2e-05
                  HHHT-STGGGEEEESSHHHHHHHHHHHCCCC.....-TTTSEEEEETTSHGGGTHHHHHHHHH....HTEEEEEEEBETTSCBEGGGHHHH--TTEEE CS
  Aminotran_5  54 elinaeseeeiiftsGtteainlvalslars.....lkpgdeivvteaehhanlvpwqelakr....tgakvkvipldeegeldldelekllnektkl 142
                  +lina+ ++++ f  +++ea++++ + +++         + +i+  ++  h+ ++  + +  +     g+  k + + +    dl ++++ +++ t++
   EHT97809.1  92 KLINATFADRVFFANSGAEANEAAFKLARYYackrhSPFKSKIIAFHNAFHGRTLFTVTVGGQpkysDGFGPKPADIVHVPFNDLAAVKAVIDDHTCA 189
                  78999999999999999998888876655444223244578899999999999888888876611113444555566666667899************ PP

                  EEEESBETTTTEB--HHHHH....HHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 143 vaithvsnvtGtiqpveeig....klakkkgalvlvDaaqavgh 182
                  + +  ++ + G++  ++e+     +l+ k++al+++D +q+ + 
   EHT97809.1 190 IVVETIQGEGGVMPATPEFMqglrELCDKHQALLVLDEVQSGMG 233
                  ************987777651111678889**********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3117.66
//
Query:       EHT97810.1  [L=191]
Description: aminodeoxychorismate synthase, subunit II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-54  185.1   0.0    1.3e-54  184.9   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
      2e-08   34.2   0.2      7e-08   32.5   0.2    1.7  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.0   1.4e-58   1.3e-54       1     187 [.       3     189 ..       3     191 .] 0.97

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 1.4e-58
                 EEEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   1 lliDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 lliDnyds+t+nl +++++lg++v+vv++da  + ++  +   +++++s+Gp++p   + +++ai+++++ ++P+LG+CLG+Q++a+ fg++vv+++ +
  EHT97810.1   3 LLIDNYDSFTWNLYQYFCQLGANVQVVRNDAITLDEM-TALPLTHLVISPGPCTPDqSGISLQAIRHFAG-RLPVLGVCLGHQAIAQVFGAQVVRAR-E 98 
                 58****************************9777776.4899****************************.**************************.9 PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE...EEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtaksedde...elmeiiekknpfvgvQFHPEststpegpellfnfl 187
                  +hg+t+ ++++++++++gl+++++++++H++ v+  +++p++++vta+s  d+   e+m+i++k+  + gvQFHPEs+++++g++ll+nfl
  EHT97810.1  99 VMHGKTSAVQHNGCGVFRGLNQPLTVTRYHSLIVKA-DTLPDEFDVTAWSLRDGqpdEIMGIRHKTLALEGVQFHPESILSEQGHQLLANFL 189
                 ***********************************8.*************9999999*********************************96 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   7.9e-12     7e-08     102     216 .]      69     174 ..      52     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 7.9e-12
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrveAvae.Dg 194
                     + ++P+lg+C+G+q ++ ++G +++++ e    ++ h       ++ av+ +  +++  l +     v+ +H+  +k   l +e+ v+A++  Dg
     EHT97810.1  69 FAGRLPVLGVCLGHQAIAQVFGAQVVRARE----VM-H------GKTSAVQHNGCGVFRGLNQ--PLTVTRYHSLIVKAdtLPDEFDVTAWSLrDG 151
                    45689************9999987776655....22.2......3456788888889988876..99********998767***********88** PP

  Peptidase_C26 195 viEaieseeakafvl.gvQwHPE 216
                        i  +++k+ +l gvQ+HPE
     EHT97810.1 152 QPDEIMGIRHKTLALeGVQFHPE 174
                    *999999999965554******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1569.73
//
Query:       EHT97811.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-97  326.7   3.8    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      3e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   8.7    1.9e-10   41.4   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.023   14.5   5.9      0.036   13.8   5.9    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.028   13.6   1.5      0.054   12.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   12.9   6.3      0.048   12.2   6.3    1.3  1  FUSC             Fusaric acid resistance protein family
      0.032   14.6   4.4       0.12   12.8   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.044   13.0   0.5      0.074   12.2   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.096   12.2   2.0       0.12   11.9   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.14   11.9   9.9       0.23   11.2   9.9    1.2  1  ERM              Ezrin/radixin/moesin family
       0.17   11.8   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.19   12.1   3.0       0.49   10.7   3.0    1.7  1  HalX             HalX domain
       0.29   10.8   2.3        1.1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
          1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        4.2    6.9   7.3        9.3    5.7   7.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        6.1    7.5   8.3        8.1    7.1   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4      0.13   1.3e+02     167     217 ..      34      87 ..      22     121 .. 0.45
   2 !  325.1   0.0    4e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeq 217
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+
    EHT97811.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEE 87 
                   45566566667777776666643113332233333333333333333322.1111 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97811.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97811.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97811.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.4e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.4e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97811.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.6e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97811.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.7     2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97811.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.9   3.9e-05     0.036     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97811.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.5   5.7e-05     0.054      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97811.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.3   5.1e-05     0.048     213     294 ..       4      89 ..       1     120 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97811.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   0.00012      0.12      22      55 ..      23      56 ..      12      71 .. 0.82
   2 ?    2.8   0.5      0.16   1.5e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHT97811.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888899************************985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97811.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   7.8e-05     0.074      24      76 ..      37      91 ..      33     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97811.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEV 91
                578***************8777443335566677788888999********9986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00013      0.12     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.3   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97811.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   3344444555555556666666778999999999998888665543889999999****9999************999844.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97811.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.9   0.00024      0.23      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97811.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.1e+03      26      54 ..      16      44 ..       9      62 .. 0.79
   2 ?    3.1   0.0     0.092        87      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.022        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97811.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.092
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97811.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97811.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.0   0.00052      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT97811.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0011       1.1     152     191 ..      17      56 ..       5      65 .. 0.86
   2 ?    1.7   0.1      0.19   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHT97811.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97811.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.5   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97811.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97811.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4   0.00097      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00097
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97811.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0042         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.085        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97811.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.085
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97811.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.3    0.0098       9.3      70     152 ..      13      97 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97811.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666677777888888888888888885542278888999************************98766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0086       8.1      22      53 ..      12      43 ..       8      50 .. 0.87
   2 ?    3.2   0.8      0.15   1.4e+02      34      57 ..      68      91 ..      62     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97811.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677899********************887665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97811.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                     1020  (0.0568911); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 3630.68
//
Query:       EHT97812.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97812.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 945.14
//
Query:       EHT97813.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97813.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97813.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97813.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97813.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 877.50
//
Query:       EHT97814.1  [L=328]
Description: hypothetical protein CKS_0826 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2788.01
//
Query:       EHT97815.1  [L=557]
Description: DNA topoisomerase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-90  304.0   0.4      2e-90  303.8   0.4    1.0  1  Topoisom_bac  DNA topoisomerase
  ------ inclusion threshold ------
      0.089   13.0   0.0       0.26   11.5   0.0    1.8  1  Toprim        Toprim domain
      0.095   12.9   0.1         13    6.1   0.0    2.6  2  RBB1NT        RBB1NT (NUC162) domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.8   0.4   3.3e-94     2e-90       5     413 .]      75     520 ..      71     520 .. 0.92

  Alignments for each domain:
  == domain 1  score: 303.8 bits;  conditional E-value: 3.3e-94
  Topoisom_bac   5 nlvdaaeaRrelDwliGinlsrlltkklkg...kkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke.......kkkkkkkeri 91 
                    ++ +a +R+  D ++G+++sr +t+k+++   k+++s+GRVqtp+L++iv+R r+ +++    y+++ +++ ++++  +           ++k+r+
    EHT97815.1  75 GMYLKALMRSAGDAIFGFSMSRCYTLKARDkgyKGTISVGRVQTPVLGMIVRRWRDNQAHSEVFYYQLAGQFISGTDVVSarwqtseYAPVDDKKRL 171
                   68999*********************55544569*************************************9666666667999998888999999* PP

  Topoisom_bac  92 kdkeeaeaileklkkkeakvesvekkekkk.ppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlsee..aelkaileala 185
                   +dk   e ++ +l  k a+v +  + + k+ ++plpf++  Lq  ++r+++l+a++tl+i qkL  + ++itY R+d+++ls+e  ++++++++al+
    EHT97815.1 172 TDKAWGEGLARALAGKPARVLAAATDRGKTtAAPLPFNLLRLQVHMNRRHKLTAQQTLDITQKLKDS-KYITYNRSDCSYLSDEqfSDAPQVVTALK 267
                   *************777899988888777777*********************************996.****************8877888888888 PP

  Topoisom_bac 186 kkygkeylefaekllkktkkksvvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktilekG 282
                   +   + + + a+++ +k++   ++++kkv+aH+AI+Pt+ lp+l++ls++ek +Y  I++ +l +++++ +++e  +++++++e fk+s +++ ++G
    EHT97815.1 268 TL--DVFNGLATDTAQKSA---AFDSKKVTAHTAIIPTATLPDLNSLSEKEKAVYLAIAQFYLVQFVAKKRFDEALAEIKCGDEIFKVSARKTRDAG 359
                   74..346666666555433...689*****************99***************************************************** PP

  Topoisom_bac 283 fkkvykeekkeeeee.......elpelkegeevkvkeveleekkTkppkryteasLikameka.........................giGtpaTra 347
                   f+ + +++++e+ee+        +++l++g ++++ ev ++ekkTkp + +tea+L++a+ +                          giGtpaTra
    EHT97815.1 360 FTVFLNDSENEDEEDenssafeAISRLQTGATLTCREVVISEKKTKPLPLFTEATLLAALVRVadfvadprikkllkekdkdkkdehgGIGTPATRA 456
                   *****8888887766789***999************************************************************************* PP

  Topoisom_bac 348 eiieklvergYverkkkslvptelGkalvellekfkdlvspelTaeleekLdeIaegkadakevld 413
                   +iie+l++r+Y++++k++++pt  G al+++l+  +++++p++Ta + ek +++++g+++ + ++d
    EHT97815.1 457 AIIETLKTRDYITEEKGKFIPTAAGLALIDALP--DSVTQPDMTAVWAEKQAAVETGEMTIERFID 520
                   ***************99***************9..89***********************999985 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.4e-05      0.26      62     101 ..      16      53 ..       2      55 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
                 HHSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEES CS
      Toprim  62 radeiilatDpDreGeaiawellevlkellenkigrvefs 101
                 + + ++ + DpD eG+ +  e+le+++  + + ++r+ ++
  EHT97815.1  16 DIKMVVHCGDPDDEGQLLVDEVLEFAG--NTAPVKRALIN 53 
                 45589******************9988..55567888765 PP

>> RBB1NT  RBB1NT (NUC162) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0021        13      47      71 ..     234     258 ..     213     270 .. 0.82
   2 ?    4.0   0.0     0.009        54      33      87 ..     503     556 ..     497     557 .] 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0021
      RBB1NT  47 SFkdgkfytvarkdvkeltkesiak 71 
                   kd+k+ t++r+d++ l+ e+ + 
  EHT97815.1 234 KLKDSKYITYNRSDCSYLSDEQFSD 258
                 579***************9887665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.009
      RBB1NT  33 qddvtvkkdeilvrSFkdgkfytvarkdvkeltkesiakseaslkkalekAlefl 87 
                 +++++v+  e+ +  F dg +++v+r  v+  +  ++a +++ +k+al++   f+
  EHT97815.1 503 EKQAAVETGEMTIERFIDGLYAEVSR-LVESADIAISATEKQPVKTALNRSAGFV 556
                 66778888999999***********9.6777777777777778999999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4493.30
//
Query:       EHT97816.1  [L=268]
Description: putative MobB family mobilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-09   37.8   0.0    2.7e-09   37.1   0.0    1.3  1  TraG-D_C       TraM recognition site of TraD and TraG
    2.3e-08   33.4   0.0      3e-08   33.0   0.0    1.0  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-


Domain annotation for each model (and alignments):
>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     3e-13   2.7e-09       2      93 ..      89     183 ..      88     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 3e-13
    TraG-D_C   2 vlfllDEfanlgkipdleellstgrsrgislvlilQsiaqlee....lYgkegaetilgncdvklflgvndeetaeelSkllGektvesestssss 93 
                 v ++lDE+      p le  l t+r +g+++++++Q i +l++    l g+    +i++n+++kl+++++++etae+ +k++G+  v+ e+++ ++
  EHT97816.1  89 VAIFLDELKYHLSRPALEG-LGTARDKGVHIFMAFQAIDDLRDcpsdLNGDSVIGAIIENAKFKLIYKIQNPETAEWAAKMTGSILVDDEMRKVRT 183
                 7899*****99999*9999.**********************966656777777*****************************9999877665554 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   3.3e-12     3e-08     179     379 ..      26     227 ..      18     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.3e-12
  TrwB_AAD_bind 179 levlelLaekgerFSireWleeedesgwlfltskaeqrallrpllsawldlaikallslpesrerrlWfflDElpaLgrleelksllaegRkfGga 274
                    +++++ +++++  FS++e + e++   ++  t++++  ++ r +l+ ++++a  ++ ++ +s  r +  flDEl+     ++l+ +l ++R +G+ 
     EHT97816.1  26 IALVNSINATKG-FSLKEVFDEGGCCYIIGSTRNQKIISAQRMILTRLIQIA--ETRDRINSTPRTVAIFLDELKYHLSRPALE-GLGTARDKGVH 117
                    555666666666.*****9999964445555556666677788888888777..566778889999********9755557775.8999******* PP

  TrwB_AAD_bind 275 vvlglqsiaqlrev....YGedaaqsilslvntklilrvsdaetAeelsellGeqeverstesls..ygannsrdgvslgrqrevrpvVlaselqn 364
                    + +++q+i  lr+      G     +i+++++ kli ++++ etAe+++++ G+  v+++   +    + ++  d +  + ++     V ++  +n
     EHT97816.1 118 IFMAFQAIDDLRDCpsdlNGDSVIGAIIENAKFKLIYKIQNPETAEWAAKMTGSILVDDEMRKVRtdLSLTEKVD-TDRMIRQAESYYVDSNMFLN 212
                    ***********986222267778888999************************8777655444330122222233.23333444445677777788 PP

  TrwB_AAD_bind 365 lpdlegylklpeglp 379
                    lp++ g++    +lp
     EHT97816.1 213 LPEKVGFVFTSTELP 227
                    999998888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1991.19
//
Query:       EHT97817.1  [L=171]
Description: putative MobC family mobilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1289.22
//
Query:       EHT97818.1  [L=149]
Description: ParB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-25   89.9   0.1    1.7e-25   89.6   0.1    1.1  1  SNase     Staphylococcal nuclease homologue


Domain annotation for each model (and alignments):
>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   9.5e-30   1.7e-25       1     107 [.      38     134 ..      38     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 9.5e-30
                 EEEETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEETTEEHHHHHHHTTSSEE---BTTSTTTHHHHHHHHHHHH CS
       SNase   1 kvrLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvylnkknineeLvkeGlArvyevyekneekkkellkaeeeAk 99 
                 kvrL gidaPe+       qpfg+++k+ l kl +qk+++v+  ++  D+ygr l++++++++nin+e +k+G+A++y+++ +    ++ +l++eeeA+
  EHT97818.1  38 KVRLNGIDAPESG------QPFGQRSKQNLLKLAVQKQTEVIANNT--DRYGRWLGTLMIDGININAEQIKAGMAWAYRYHGR--ASDETMLRLEEEAR 126
                 79***********......****************9***9999999..****************************9998885..6999********** PP

                 HTT-GGGC CS
       SNase 100 kkrkglWs 107
                 ++r glWs
  EHT97818.1 127 RHRIGLWS 134
                 *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1190.61
//
Query:       EHT97819.1  [L=98]
Description: putative membrane prtotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.025   14.2   0.2      0.027   14.1   0.2    1.1  1  DUF1449        Protein of unknown function (DUF1449)
      0.049   13.5   0.2      0.057   13.3   0.2    1.1  1  DUF2975        Protein of unknown function (DUF2975)
       0.21   10.7   1.1       0.29   10.2   1.1    1.3  1  DUF3413        Domain of unknown function (DUF3413)
       0.38   10.7   3.4       0.74    9.8   3.4    1.5  1  SNN_transmemb  Stannin transmembrane


Domain annotation for each model (and alignments):
>> DUF1449  Protein of unknown function (DUF1449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   6.1e-06     0.027      64     119 ..      23      76 ..       5      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.1e-06
     DUF1449  64 vgrvPvLilLvlfLtlFglvGlvlqslvasllgallpallaaaialllalplvrvl 119
                 + r+ ++ ++++fLt+Fgl Gl++q+  ++l +++  ++  a i++l+a++lv +l
  EHT97819.1  23 ITRIGMIGFVCTFLTYFGL-GLIMQHSGQNLPESFTEGCAQA-IVALIAIALVGFL 76 
                 45777888899*******8.***********99988887555.5556788888776 PP

>> DUF2975  Protein of unknown function (DUF2975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.3e-05     0.057      51     114 ..      15      78 ..       2      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
     DUF2975  51 FspanvrrLrriglaliaa.alllaagivalallaelelapgvvllllgvafaslvigllvlvla 114
                  s + + ++ rig++ ++   l++++++++++ +++  l    + ++  +++a ++i+l+ ++++
  EHT97819.1  15 WSFKVAEWITRIGMIGFVCtFLTYFGLGLIMQHSGQ-NLPESFTEGCAQAIVALIAIALVGFLVR 78 
                 567788999999999999977788999999999999.667799****************988876 PP

>> DUF3413  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.1   6.6e-05      0.29      46      79 ..      15      48 ..      10      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.6e-05
     DUF3413 46 llYlvvsllghfsflafliyllvlfpltflipsr 79
                + + v+ +++ ++++ f++++l+ f l ++++++
  EHT97819.1 15 WSFKVAEWITRIGMIGFVCTFLTYFGLGLIMQHS 48
                78999**********************9998764 PP

>> SNN_transmemb  Stannin transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.4   0.00017      0.74       8      30 ..      57      79 ..      44      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
  SNN_transmemb  8 TTGVVTVIViLIAvAALGALILG 30
                   T G    IV LIA+A  G L+ G
     EHT97819.1 57 TEGCAQAIVALIAIALVGFLVRG 79
                   7788899***********99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 723.85
//
Query:       EHT97820.1  [L=77]
Description: hypothetical protein CKS_0834 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 587.62
//
Query:       EHT97821.1  [L=177]
Description: chromosome partitioning ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1381.46
//
Query:       EHT97822.1  [L=260]
Description: zinc metalloproteinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-05   24.6   0.0    2.8e-05   24.0   0.0    1.2  1  SprT-like      SprT-like family
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.039   13.7   0.0    1.3  1  BSP            Peptidase of plants and bacteria
       0.22   11.8   0.0       0.32   11.3   0.0    1.2  1  Peptidase_M91  Effector protein


Domain annotation for each model (and alignments):
>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.6e-09   2.8e-05       6     102 ..      19     116 ..      14     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.6e-09
   SprT-like   6 kklddavfggqaaggvkiiwskrlnttaGranlkr.atvrhhasIeLseklldsrsedrllntLaHElcHlalfvisg..vrnnpHGaeFkawaakvek 101
                 + ++  +f++  ++++ i+ + r ++t G    +r + ++   ++ +++ +   rs  ++l+tL+HE++H++ +       r   H++ + a +++v+ 
  EHT97822.1  19 DWFNLSLFDKA-LPDLLITLQ-RGRNTFGYFAPERfTGESSVSELAMNPDYFGGRSLADTLSTLVHEMVHVWQHYAPVkkCRGGYHDRVWGAKMEEVGL 115
                 55666666666.677767666.77889999999995556678899****************************876662255788**********9975 PP

   SprT-like 102 a 102
                 +
  EHT97822.1 116 M 116
                 5 PP

>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.6e-06     0.039      96     120 ..      74      99 ..      53     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-06
         BSP  96 aevtgvLthelvhvyqwea.egrapg 120
                 a++ + L+he+vhv+q+ a  +++ g
  EHT97822.1  74 ADTLSTLVHEMVHVWQHYApVKKCRG 99 
                 677889***********875444444 PP

>> Peptidase_M91  Effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.3e-05      0.32      69     109 ..      54      92 ..      26     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
  Peptidase_M91  69 gegtdaeinynpafsseeegkegrPsavLyHElaHaydaln 109
                    ge++ +e+ +np++      +     ++L HE++H++++++
     EHT97822.1  54 GESSVSELAMNPDYFGG--RSLADTLSTLVHEMVHVWQHYA 92 
                    55566677777776666..334444478*********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1902.02
//
Query:       EHT97823.1  [L=42]
Description: hypothetical protein CKS_0837 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 308.59
//
Query:       EHT97824.1  [L=54]
Description: hypothetical protein CKS_0838 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   13.9   0.9      0.031   13.9   0.9    1.0  1  DUF4956   Domain of unknown function (DUF4956)


Domain annotation for each model (and alignments):
>> DUF4956  Domain of unknown function (DUF4956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.9   1.7e-06     0.031      26      63 ..       7      44 ..       2      54 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-06
     DUF4956 26 flllnvgvfavvlllasvevsiglglGLfgvlsilRlR 63
                ++ll++  +++v++las  ++  +g+GL  ++++l + 
  EHT97824.1  7 MMLLSIYAYLLVVFLASGAADKWIGIGLCVLFGVLSYK 44
                899************99999988888887777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 427.97
//
Query:       EHT97825.1  [L=104]
Description: CcdB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  102.6   0.0    1.2e-29  102.5   0.0    1.0  1  CcdB      CcdB protein


Domain annotation for each model (and alignments):
>> CcdB  CcdB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   6.7e-34   1.2e-29       1     100 []       2     103 ..       2     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 6.7e-34
        CcdB   1 qFdvYrnpsaskkaipylldvqsdlldelktrvVvPLlraselsk..vakrLnpvle.vegeevvlltaelaavpakeLgkkvaslseerdeiiaAlDl 96 
                 qF+vY n+++s + +p+lldv+sd++ +l++r+V+PLl++++++    ++rL+p ++  +++e++++t+e+a++pa+ Lg+ ++++s +r+e++aA+D+
  EHT97825.1   2 QFTVYSNTGKS-AVYPLLLDVTSDIIGQLNRRIVIPLLPVEKYPGstRPERLVPLVRlTDDKEYAVMTHEMASIPARSLGAAFCDASPYRTEVKAAIDF 99 
                 9**********.*******************************99999*********668899************************************ PP

        CcdB  97 lltG 100
                 ll+G
  EHT97825.1 100 LLDG 103
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 766.92
//
Query:       EHT97826.1  [L=66]
Description: putative antitoxin of gyrase inhibiting toxin-antitoxin system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   88.3   1.4    3.4e-25   88.2   1.4    1.0  1  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   1.4   1.9e-29   3.4e-25       7      71 .]       2      66 .]       1      66 [] 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1.9e-29
        CcdA  7 sldsdllaqAralgiNlSatleeaLaeevkeekaerwkeenreaieelNrfveehGlfsdeyRrF 71
                +++++ll +Ar++giNlSatl++aL++e+++ +a++w+een ea+e+lNrf++ehG+fsdeyR+F
  EHT97826.1  2 TVERALLSRAREAGINLSATLTAALDAELRQYEAKKWQEENNEALEALNRFHDEHGCFSDEYRTF 66
                8999***********************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 497.45
//
Query:       EHT97827.1  [L=189]
Description: hypothetical protein CKS_0841 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1459.31
//
Query:       EHT97828.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97828.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97828.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97828.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97828.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 788.68
//
Query:       EHT97829.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97829.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 865.47
//
Query:       EHT97830.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-97  326.8   2.7    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.9e-12   45.6   8.5    1.9e-11   44.6   8.5    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.046   12.3   7.1      0.072   11.6   7.1    1.3  1  FUSC             Fusaric acid resistance protein family
      0.046   12.9   1.3       0.09   12.0   1.3    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.05   13.2   1.7      0.072   12.6   0.5    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
        0.1   12.3   1.6       0.81    9.4   0.3    2.2  2  LXG              LXG domain of WXG superfamily
       0.13   12.6   3.2       0.93    9.9   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   11.8   4.7       0.24   11.2   4.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.22   11.8   2.3        0.6   10.5   2.3    1.7  1  HalX             HalX domain
       0.23   10.7   4.0       0.39    9.9   4.0    1.3  1  ALIX_LYPXL_bnd   ALIX V-shaped domain binding to HIV
       0.26   11.7   2.9       0.56   10.6   2.9    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.29   10.9  10.4       0.48   10.2  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.36   11.2   4.1       0.92    9.9   2.6    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.48   10.6   7.6       0.22   11.7   4.5    1.8  2  CREPT            Cell-cycle alteration and expression-elevate
        1.2    8.6   6.9        2.9    7.4   6.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          2    8.7   6.7        0.3   11.4   1.2    2.3  2  ABC_tran_CTD     ABC transporter C-terminal domain
        7.6    7.2   8.3         15    6.3   1.9    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.069        59     168     229 ..      35     111 ..      21     122 .. 0.49
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.069
  DDE_Tnp_IS66 168 qaaaealarigklyaierearea..................eaeerlalrqeesrpllaeleawleeqlkkvlpksklgk 229
                   q++a   + i++l+a+ ++++++                  eaeer ++ qee +++l el++     l++ l++s ++k
    EHT97830.1  35 QRVAAYASAINRLKALVAKLQRMqfgksseklrektarqvrEAEERISALQEEMAEVLGELHD---PALPQPLRQSSARK 111
                   444444455555555555554222332222221111222223455555555555555555555...33455555555555 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97830.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97830.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97830.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97830.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97830.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   8.5   2.2e-14   1.9e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97830.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGElhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************9666555555556667778888888888889999*********************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.1   8.5e-05     0.072     213     294 ..       4      89 ..       1     124 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97830.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********877775556666666666666666666666554 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   0.00011      0.09      47     106 ..      34      90 ..      25      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97830.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   8.4e-05     0.072     144     223 ..      10      99 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k........e 223
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +        +
    EHT97830.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgelhdpA 99 
                   33444445555555556666667778999999999988886655439999999***********************88844444333330 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97830.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00095      0.81     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.3   0.1      0.14   1.2e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00095
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT97830.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97830.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                 56788888899999999999999999999988777 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0011      0.93      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    2.8   0.4      0.18   1.5e+02      33      53 ..      71      91 ..      68      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT97830.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97830.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.7   0.00028      0.24     114     195 ..      10      95 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveey 195
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e 
  EHT97830.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5788887777776655577777899999**********9862678999**********************************9986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97830.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3    0.0007       0.6       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y + + +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l el d
  EHT97830.1 37 VAAYASAINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGELHD 97
                789*****************************8752277888***************9876 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   0.00046      0.39      74     164 ..       9      96 ..       4     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00046
  ALIX_LYPXL_bnd  74 taelraelqkyreileeAsesDkivrqklqenkedlelLsgpeeeleaa.lpssssaaasesveeqirklrsllekldelkaereqllkdlk 164
                     +a lra lq+ ++++ + +e ++ ++q+++++ +++  L++  ++l++  + +ss++      e+ +r++r++ e++++l++e +++l +l+
      EHT97830.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqFGKSSEK----LREKTARQVREAEERISALQEEMAEVLGELH 96 
                     7899***********************************998888888855565543....3455555777777999999999888888886 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.9   0.00066      0.56      32     107 ..      21      95 ..       4      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskalleei 107
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l e+
  EHT97830.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5688999***********************9999877..66677888888999999************999887665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.4   0.00056      0.48      17      99 ..       5      89 ..       3      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
         ERM 17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeese 99
                + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ 
  EHT97830.1  5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMA 89
                66888999999****************************999999999999887335577789*******************986 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6    0.0011      0.92       9      65 ..      24      76 ..      21      94 .. 0.79
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT97830.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT97830.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97830.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97830.1 167 ACCSCDHI 174
                  35555554 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.5   0.00025      0.22      44     141 ..      10     115 ..       6     117 .. 0.78
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshiqsLPdLtelpd...vt 133
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  L d + lp+    +
  EHT97830.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLGELHDPA-LPQplrQS 107
                 56778999999********************99999999987615666776666655432111278888999999999999999998855.88877778 PP

       CREPT 134 gglapLPs 141
                 ++ +pLP 
  EHT97830.1 108 SARKPLPA 115
                 88899996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT97830.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.9    0.0034       2.9      71     152 ..      14      97 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL +l +
    EHT97830.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                   55666666666666666666667777888889999999999877644778888999***********************99987 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4       2.5   2.1e+03      36      55 ..      32      52 ..       7      59 .. 0.42
   2 ?   11.4   1.2   0.00035       0.3       1      37 [.      65     101 ..      65     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
  ABC_tran_CTD 36 lysdp.eklaelsaeleelea 55
                  l s+  ++ a + ++l++l a
    EHT97830.1 32 LLSQRvAAYASAINRLKALVA 52
                  222222333333333443333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpely 37 
                   kl  k  r+  e e++I aL+ee+ae+  el dp+l 
    EHT97830.1  65 KLREKTARQVREAEERISALQEEMAEVLGELHDPALP 101
                   788899999*************************974 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.9     0.017        15      22      53 ..      12      43 ..      10      67 .. 0.88
   2 ?    2.7   1.4      0.24     2e+02      34      55 ..      68      89 ..      42     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97830.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                667889********************887665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessg 55
                ++  rq+r+ +er+++l+e+++
  EHT97830.1 68 EKTARQVREAEERISALQEEMA 89
                4555666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1081  (0.0602934); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 3706.13
//
Query:       EHT97831.1  [L=91]
Description: DnaJ-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.1   0.0      2e-10   40.6   0.0    1.3  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.1e-14     2e-10       5      55 ..       9      56 ..       5      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.1e-14
                HHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTS CS
        DnaJ  5 iLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsd 55
                + g+s + +e +Ik+aY+k alkyHPD+n   p  +e  k +n+A+++L+ 
  EHT97831.1  9 VFGLSGELTEMDIKAAYKKAALKYHPDRN---PLGAELMKAVNAAFDFLMA 56
                7899999**********************...999999*********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 711.41
//
Query:       EHT97832.1  [L=106]
Description: hypothetical protein CKS_5475 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-22   79.6   0.0    1.7e-22   79.4   0.0    1.0  1  Gp49        Phage derived protein Gp49-like (DUF891)
  ------ inclusion threshold ------
      0.069   13.8   0.0      0.098   13.3   0.0    1.3  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> Gp49  Phage derived protein Gp49-like (DUF891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   1.9e-26   1.7e-22       2      89 ..      13      99 ..      12     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.9e-26
        Gp49  2 eldalpkkarakilaaldlleeggpdlgkplvkkledglwElrpksaggiiRvlyafdpgrkvilLhafqKktqktpkkeielAekrl 89
                el++lp+  rak++++l++le++  +l++p +k ++dgl+E+r  +ag+i+R l++++ g+k++lL  f+Kkt ktp +ei+lA +rl
  EHT97832.1 13 ELSDLPAPLRAKMVRQLKKLEHNPQQLREPDTKPIGDGLFEVRA-KAGDIARGLWVYQVGKKIYLLRFFIKKTPKTPPEEIALAWARL 99
                799********************888******************.5666***********************************9997 PP

>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05     0.098       1      67 [.       4      77 ..       4      87 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
                EEEEHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHTTTSEECTSTC...............CTTEEEEEEC..TEEE CS
  ParE_toxin  1 vrltprAlkdlkkiadyiardgpaakrfldaleealellaenpalgrprrelg...............lkglrririg..dyri 67
                v+++++A+++l ++   +      +++++ +l    + l+ np++ r+++ +                 +gl+++++g   y++
  EHT97832.1  4 VIFHDEAESELSDLPAPL------RAKMVRQL----KKLEHNPQQLREPDTKPigdglfevrakagdiARGLWVYQVGkkIYLL 77
                79************9988......77777777....557777777777555556334444555555554455555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 779.09
//
Query:       EHT97833.1  [L=125]
Description: PIN domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-05   23.9   0.0     0.0001   22.8   0.0    1.7  1  PIN       PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.8e-09    0.0001       1     121 [.       3     115 ..       3     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.8e-09
                 EEE-HHHHHHHHTTSHHHHHHHHHHHTSSEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHHHHHHHSBHHHHHHHH CS
         PIN   1 ivlDTsvliallrgeekaeaarklleeleelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaeialkygllpnDaliaA 99 
                 i++DTsv+++++r++++   + +ll + + +++ + +laE++ +          + + + +l ll+++   +i++  + +  e    +g+++ D  ++A
  EHT97833.1   3 ILVDTSVWVDHFRNRNDG--LIQLLSG-DQVLIHPMILAEIACGTPP-----APRLRTLGDLGLLPQCHQANITEVMTFIENEKLYGLGCGLVDITLLA 93 
                 79**********999977..6777776.*****************99.....8888888888889999999*99999999999999999********** PP

                 HHHHHT-EEE.ESSTHHHHHHH CS
         PIN 100 tAkehgikliatfDedfrrvak 121
                   + +  ++++t D++++r+ak
  EHT97833.1  94 STLITPGAKLWTLDKRLERLAK 115
                 99999999999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 900.06
//
Query:       EHT97834.1  [L=67]
Description: hypothetical protein CKS_5473 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-06   27.1   0.3    3.5e-06   26.8   0.3    1.1  1  VapB_antitoxin  Bacterial antitoxin of type II TA system, Vap
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.38   10.9   0.0    1.7  2  DUF2802         Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> VapB_antitoxin  Bacterial antitoxin of type II TA system, VapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3     4e-10   3.5e-06       1      44 [.       1      45 [.       1      48 [. 0.93

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4e-10
                    XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX-------HH. CS
  VapB_antitoxin  1 MrtnIeiDDeLlaeAirltg.lktKrEaVnlALreLiqrrkreel 44
                    Mrt+++iDD L a+A++++    +K  + ++A++++++ ++++ l
      EHT97834.1  1 MRTTVTIDDVLYAQALEMADpGMDKADIFREAVKTFVRVQAAKRL 45
                    9*************************************9998844 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-05      0.38      29      52 ..       8      31 ..       3      32 .. 0.89
   2 ?   -1.3   0.0      0.27   2.4e+03      35      45 ..      41      51 ..      37      57 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
     DUF2802 29 qsklYsqAiklvrqGasveelaee 52
                ++ lY qA++++  G++  ++ +e
  EHT97834.1  8 DDVLYAQALEMADPGMDKADIFRE 31
                5789*************9999876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.27
     DUF2802 35 qAiklvrqGas 45
                 A +l+ +G s
  EHT97834.1 41 AAKRLASLGGS 51
                46677777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 492.76
//
Query:       EHT97835.1  [L=87]
Description: hypothetical protein CKS_5472 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 697.77
//
Query:       EHT97836.1  [L=96]
Description: hypothetical protein CKS_5471 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   13.0   1.0       0.16   12.4   1.0    1.3  1  SRP72     SRP72 RNA-binding domain


Domain annotation for each model (and alignments):
>> SRP72  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.0   9.1e-06      0.16       4      37 ..      20      53 ..      17      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.1e-06
       SRP72  4 kgkrseetatsekgkkkkrkkkrkRkvklPKnyd 37
                +++ + +tats+ +++ k+++k+ + ++ PKn +
  EHT97836.1 20 LQESTSKTATSQNVESVKEQQKKVKVGRKPKNLQ 53
                56778889999999999888888888999***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1533  (0.0855039); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 765.19
//
Query:       EHT97837.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97837.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97837.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97837.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97837.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97837.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97837.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97837.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97837.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97837.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97837.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97837.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97837.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97837.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97837.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97837.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97837.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97837.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2291.86
//
Query:       EHT97838.1  [L=53]
Description: OspG family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 435.85
//
Query:       EHT97839.1  [L=266]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-13   47.8   0.0    1.4e-12   46.8   0.0    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      1e-12   48.3   0.0    1.6e-12   47.7   0.0    1.3  1  DDE_Tnp_ISL3  Transposase
    6.2e-10   39.6   7.3    1.3e-09   38.6   7.3    1.6  1  zf-ISL3       zinc-finger of transposase IS204/IS1001/IS1096/
  ------ inclusion threshold ------
       0.15   12.2   0.4       0.28   11.3   0.4    1.4  1  FANCI_S1-cap  FANCI solenoid 1 cap


Domain annotation for each model (and alignments):
>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   3.2e-16   1.4e-12       2      52 .]      82     131 ..      81     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 3.2e-16
  HTH_Tnp_ISL3   2 elPwarrrsriTlrleayilelllesrsvkavArqlgvSwtTVwrildryv 52 
                   ++Pwa ++sr+Tl++e ++l  l+ s +v av +ql +Sw+ V  i+ r+v
    EHT97839.1  82 PVPWAGPGSRYTLLFESFVLSWLKIS-TVDAVRKQLKLSWNAVDGIMTRAV 131
                   69************************.********************9986 PP

>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   3.6e-16   1.6e-12       2      78 ..     148     221 ..     147     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.6e-16
  DDE_Tnp_ISL3   2 giDEislkkghkyvtvvvdllvdggrlldilpgRkketlkafleslsekerekveavvmDmsaayksavkealPnAk 78 
                    +DE+++kkgh+y+tv++d     g  l+ +++R +e l ++l++l++++  ++++ +mDm+a+y++a++ +lP A+
    EHT97839.1 148 NVDEVAFKKGHRYITVISDR---DGWALALTDDRGTESLASYLRTLTDSQLLTIKTLSMDMNAGYIRAARIHLPSAV 221
                   59****************98...6777899*****************9**************************996 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   7.3   2.8e-13   1.3e-09       4      47 .]      34      76 ..      31      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.8e-13
     zf-ISL3  4 rCPnCgsk.tvvkhgkkerrvrhlpiggkrvyLrlrkrRyrCkeC 47
                +CP+Cg+  +v++h   +r++rhl+++++ + +++ ++R+ C+e+
  EHT97839.1 34 TCPTCGKScPVHDHR--HRKWRHLDTCQFATLVEADVPRIMCPEH 76
                8*******9988886..**************************95 PP

>> FANCI_S1-cap  FANCI solenoid 1 cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   6.3e-05      0.28       6      32 ..     172     198 ..     170     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.3e-05
  FANCI_S1-cap   6 lsLaaedsteeLqkfLqtLkedeLtel 32 
                   l+L ++  te L ++L+tL++ +L ++
    EHT97839.1 172 LALTDDRGTESLASYLRTLTDSQLLTI 198
                   7899999*****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1866.68
//
Query:       EHT97840.1  [L=47]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.078   12.7   1.1      0.075   12.7   1.1    1.0  1  DDE_Tnp_ISL3  Transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.1   4.2e-06     0.075     127     162 ..       1      36 [.       1      47 [] 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-06
  DDE_Tnp_ISL3 127 lteeqkqrldelleaspelekaYelkeelrevfrkk 162
                   +te+++++l +l e+ +++++ + lke  r++ ++ 
    EHT97840.1   1 MTESRQEKLAWLREQMQQTSQCWTLKELARDIRNRP 36 
                   6899***************************99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 339.45
//
Query:       EHT97841.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97841.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97841.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97841.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97841.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97841.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97841.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97841.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97841.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97841.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97841.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97841.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97841.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97841.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97841.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97841.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97841.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97841.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2377.71
//
Query:       EHT97842.1  [L=190]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-42  142.5   1.1    1.2e-41  142.2   1.1    1.2  1  Resolvase      Resolvase, N terminal domain
    5.1e-09   36.1   0.8    1.2e-08   34.9   0.2    2.0  2  HTH_7          Helix-turn-helix domain of resolvase
     0.0011   18.7   0.6     0.0011   18.7   0.6    2.0  2  HTH_23         Homeodomain-like domain
     0.0033   17.5   0.2         29    4.8   0.0    3.2  3  HTH_20         Helix-turn-helix domain
     0.0036   17.3   1.7       0.15   12.1   0.0    2.9  3  HTH_29         Winged helix-turn helix
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.028   14.4   0.0    1.7  1  HTH_Tnp_IS630  Transposase
      0.037   13.9   0.0      0.079   12.9   0.0    1.5  1  TrmB           Sugar-specific transcriptional regulator TrmB
      0.079   12.8   0.1       0.21   11.4   0.1    1.9  1  HTH_IclR       IclR helix-turn-helix domain
       0.11   12.3   3.7       0.14   12.0   0.3    2.4  2  HTH_38         Helix-turn-helix domain
       0.12   12.3   0.0       0.26   11.2   0.0    1.7  1  PAX            'Paired box' domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   1.1     7e-45   1.2e-41       2     145 ..       4     138 ..       3     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 7e-45
                 EEEEEES-----THHHHHHHHHHHH-S--..S.E...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglk.ivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvs 99 
                 +gYaRvSt++q+  l+ Q++al+ ++ +   + i   f+Dk +SG++ +Rpgl+ l  +++e  gdv++v+kldRL+R+++d+++l++e++++gv +++
  EHT97842.1   4 FGYARVSTSQQS--LDIQIRALKDAGVKA--NrI---FTDK-ASGSSVDRPGLDLLRMKVEE--GDVILVKKLDRLGRDTADMIQLIKEFDAHGVAIRF 92 
                 79**********..************777..448...****.********************..*********************************** PP

                 SS..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 100 ldegidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 +d+gi t+ +mg+++++il+a+a++er++i ert+eg+++ak kG+
  EHT97842.1  93 IDDGISTDGDMGKMVVTILSAVAQAERRRILERTNEGRQEAKLKGV 138
                 *******************************************996 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.9   8.8e+03      26      35 ..     121     130 ..     118     133 .. 0.52
   2 !   34.9   0.2   6.5e-12   1.2e-08       1      44 [.     141     181 ..     141     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
                 TTSSSS---S CS
       HTH_7  26 kIAkevnisR 35 
                  I +++n +R
  EHT97842.1 121 RILERTNEGR 130
                 4555555444 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 6.5e-12
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--SS-- CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYRylad 44 
                 GR++++++    rv++L+ +G+ +++I + + i+RsTvY++l++
  EHT97842.1 141 GRKRTIDR---SRVLELHLAGTGATDISRTLSIARSTVYKILEE 181
                 9*******...9*****************************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.3   4.1e+03      35      42 ..     120     127 ..     112     134 .. 0.61
   2 !   18.7   0.6     6e-07    0.0011       2      40 ..     143     181 ..     142     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.3
      HTH_23  35 yrwlkryr 42 
                 +r+l+r +
  EHT97842.1 120 RRILERTN 127
                 35555543 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 6e-07
      HTH_23   2 asereRlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ++ ++R r+l l++ G   ++I+r L + r+Tvy++l+ 
  EHT97842.1 143 KRTIDRSRVLELHLAGTGATDISRTLSIARSTVYKILEE 181
                 5778999*****************************975 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.02        36      32      52 ..       7      27 ..       3      28 .. 0.92
   2 ?    4.8   0.0     0.016        29       2      24 ..     109     129 ..     108     142 .. 0.84
   3 ?    4.4   0.0     0.021        38      18      43 ..     155     177 ..     147     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.02
                HHHTS-HHHHHHHHHHHHHCT CS
      HTH_20 32 erldlskntlsyHLrvLeeag 52
                +r+++s+++l+ ++r+L +ag
  EHT97842.1  7 ARVSTSQQSLDIQIRALKDAG 27
                57899***************9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
                 HHHHHHS-HHHHHHHHHHSTCTT CS
      HTH_20   2 qiaeALahPvRrrilraLaraeg 24 
                 +i++A+a+  Rrril     +eg
  EHT97842.1 109 TILSAVAQAERRRILERT--NEG 129
                 5899***********998..444 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.021
                 HHSTCTTB-HHHHHHHHTS-HHHHHH CS
      HTH_20  18 aLaraegltaselaerldlskntlsy 43 
                 +L   +g  a+++ ++l+++++t+++
  EHT97842.1 155 HL---AGTGATDISRTLSIARSTVYK 177
                 56...788899*************97 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.3   2.4e+03      31      42 ..      78      89 ..      67      96 .. 0.75
   2 ?    3.2   0.4     0.052        93      30      55 ..     120     145 ..     119     150 .. 0.79
   3 !   12.1   0.0   8.5e-05      0.15       3      34 ..     150     180 ..     148     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
      HTH_29 31 rwlkrfeegGla 42
                  +k f+++G+a
  EHT97842.1 78 QLIKEFDAHGVA 89
                578999999976 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.052
      HTH_29  30 yrwlkrfeegGlaalldrrrsgrprn 55 
                 +r+l+r +eg+ +a l++ r gr r+
  EHT97842.1 120 RRILERTNEGRQEAKLKGVRFGRKRT 145
                 79*********877555677788776 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 8.5e-05
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwlk 34 
                 ++l l+  G +   +i + l + r+tvy++l+
  EHT97842.1 150 RVLELHLAGTG-ATDISRTLSIARSTVYKILE 180
                 6899******9.*****************997 PP

>> HTH_Tnp_IS630  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.028       8      43 ..     148     183 ..     144     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
  HTH_Tnp_IS630   8 rlkvidyiesGggitkaskvfkvgratvyrWlkree 43 
                    r +v++   +G g+t++s++  ++r+tvy+ l+ e+
     EHT97842.1 148 RSRVLELHLAGTGATDISRTLSIARSTVYKILEEEK 183
                    789999999**********************98765 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.4e-05     0.079      22      44 ..     158     180 ..     152     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.4e-05
                 CCHHCHHCCCTTSSCHCHHHHHH CS
        TrmB  22 patadeiaeelgvprskvYevLr 44 
                    a++i++ l + rs+vY++L+
  EHT97842.1 158 GTGATDISRTLSIARSTVYKILE 180
                 56799****************98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00011      0.21      19      40 ..     159     180 ..     107     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 -BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  19 ltlselArrtglpkStvhRlLq 40 
                  + ++++r + +++Stv+ +L 
  EHT97842.1 159 TGATDISRTLSIARSTVYKILE 180
                 578***************9985 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3      0.36   6.5e+02       8      20 ..     117     129 ..     113     131 .. 0.87
   2 ?   12.0   0.3   7.6e-05      0.14       9      41 ..     147     179 ..     146     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.36
      HTH_38   8 eeReeIerllaeG 20 
                 +eR++I    +eG
  EHT97842.1 117 AERRRILERTNEG 129
                 79****9999998 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.6e-05
      HTH_38   9 eReeIerllaeGlslreIArrLgrspsTIsREl 41 
                 +R +   l+ +G +  +I r L  ++sT+++ l
  EHT97842.1 147 DRSRVLELHLAGTGATDISRTLSIARSTVYKIL 179
                 7999999***********************987 PP

>> PAX  'Paired box' domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.26      23      55 ..     148     180 ..     118     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
         PAX  23 rqkivelahsgvrpcvisrqlrvshgcvskilg 55 
                 r +++el   g    +isr l +++  v kil 
  EHT97842.1 148 RSRVLELHLAGTGATDISRTLSIARSTVYKILE 180
                 899****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1401.68
//
Query:       EHT97843.1  [L=61]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-16   59.4   0.0    4.2e-16   59.2   0.0    1.0  1  DUF4158   Domain of unknown function (DUF4158)


Domain annotation for each model (and alignments):
>> DUF4158  Domain of unknown function (DUF4158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   2.3e-20   4.2e-16       1      51 [.       5      56 ..       5      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 2.3e-20
     DUF4158  1 iLtdeereallrlptd.seeelaryftLsdadlalinsrrgpanrlgfavqL 51
                +Lt+e+ e+++r+  + +e +laryf+L++ad+++i++ rg++nrlg+a+qL
  EHT97843.1  5 FLTTEQTESYGRFTGEpDELQLARYFHLDEADKEFIGKSRGDHNRLGIALQL 56
                8**************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 466.92
//
Query:       EHT97844.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97844.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97844.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97844.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97844.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97844.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97844.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97844.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97844.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97844.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97844.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97844.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97844.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97844.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97844.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97844.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97844.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97844.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2222.61
//
Query:       EHT97845.1  [L=256]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-76  254.1   0.0    1.1e-75  253.7   0.0    1.1  1  DUF1460   Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0     6e-80   1.1e-75       2     210 ..      51     248 ..      50     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 6e-80
                 HHHHTTT-BB-TT---S-TT-S-S-SS-SS-B-HHHHHHHHHHHHHBSSHHHHHHHHHHHHBGGG--STTTB--STTTHHHHHHHTSEEE-GGG-B-TT CS
     DUF1460   2 israflgtpYkagtLiesaeekeklvirfdglDCftyvetvlalarssseeeFaknLkklRYkdgkvsflsRkHffsdWiannqkrllrdvtaeisnkk 100
                 +s+aflgtpY+a+tLi+++ ++e lv++f+g+DCft+ ++v+al+rs+++++F +nL+++RY++g+v++lsR+HffsdW+++++++ +rdvt +is+  
  EHT97845.1  51 VSSAFLGTPYQADTLIGGPGTPEALVVNFNGVDCFTLADYVEALTRSHDQKSFLHNLTEVRYTGGNVDYLSRRHFFSDWFTTAPRN-ARDVTPDISP-- 146
                 89***********************************************************************************9.**********.. PP

                 -EEE--EEEHHHHHHTHHHHHHHHHHHHHHHTT--EEEEEEHHHH-HHHHTTS-TT-EEEEEEEES-EEEEEEEEEEEETTEEEEEEEETTTTE..EEE CS
     DUF1460 101 aktlkalvtkkkkynqkadeeellaglkvvekalkklkYipkealdqavlsrlktGdiiaivtektgLdVsHvGlvirkndelvlrhASslkkkkkvvd 199
                      ++   +k++n+k d++e+++gl+++ +++   +Yip +++ q+vl+rlktGd+++++++++gLdVsHvG+v+r+++++++r+ASsl++++kvvd
  EHT97845.1 147 -----DYAVADKQLNRKPDGGEYIPGLGIHPRKI---NYIPGNTISQQVLDRLKTGDYVGVYSPLEGLDVSHVGIVVRHDGQVWFRNASSLAANRKVVD 237
                 .....888899***********************...************************************************************** PP

                 EEHHHHHHHHT CS
     DUF1460 200 eplldylkkkk 210
                 +p+l+y++ k+
  EHT97845.1 238 SPFLEYMRAKP 248
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1698.84
//
Query:       EHT97846.1  [L=54]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   16.3   0.0     0.0097   16.3   0.0    1.1  1  N_NLPC_P60  NLPC_P60 stabilising domain, N term


Domain annotation for each model (and alignments):
>> N_NLPC_P60  NLPC_P60 stabilising domain, N term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0097      54      78 ..       2      33 ..       1      52 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-07
                -HHHHHHHHHHHHHHHC.......GGGG-SS- CS
  N_NLPC_P60 54 saaeqaaldeefrrryF.......aPWnqtkl 78
                + a+q++++ ++++ryF       +PWn   +
  EHT97846.1  2 DTAAQQRHFSDLKSRYFgmgagekSPWNPSYI 33
                6799************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 404.49
//
Query:       EHT97847.1  [L=282]
Description: putative cell wall-associated hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-12   45.3   0.0    1.5e-11   44.3   0.0    1.6  1  SH3_7     SH3 domain of SH3b2 type
      5e-10   38.8   0.1    1.1e-09   37.7   0.1    1.7  1  SH3_6     SH3 domain (SH3b1 type)
    3.7e-06   26.9   0.0    6.7e-06   26.1   0.0    1.4  1  NLPC_P60  NlpC/P60 family


Domain annotation for each model (and alignments):
>> SH3_7  SH3 domain of SH3b2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.4e-15   1.5e-11       1      46 [.      42      88 ..      42      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.4e-15
                -HHHHHHHHSS...-EEEE-STTEEEE-TTS-EEEEE-TT-EEEEEEE CS
       SH3_7  1 Derfvttwrsa..qrfaviirdnvplyDatgqylftariGtvLPlike 46
                D++fvt+w  +  + ++++i+++v +  ++gqy+ftar+Gt+LP+  +
  EHT97847.1 42 DQQFVTEWLTLadKNLGAFIKEPVSV-HEGGQYYFTARPGTILPFRNR 88
                9*************************.5555*************9876 PP

>> SH3_6  SH3 domain (SH3b1 type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   1.9e-13   1.1e-09      21      53 .]       2      34 ..       1      34 [. 0.97

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.9e-13
                EEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEE CS
       SH3_6 21 SalkagtPVlilhaSkDgaWlfVetsfasGWve 53
                S++++gtPV++l aS+D++W +  ++  +GWv+
  EHT97847.1  2 SSVRPGTPVYVLAASRDRRWKYALSPTITGWVR 34
                99******************************6 PP

>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.1e-09   6.7e-06       1      76 [.     139     221 ..     139     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.1e-09
                 T-BB-TT--BTTEB-HHHHHHHHHHTTT----SSHHHH.............CCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETT CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafakagielprssgeq.............eaagkkkeiskselkrGDLvffktkkgisHvgiYlgng 76 
                 g+pY wG + +   DCs+ +r++++ +gi lpr+s +q                ++ ++ +++   + +Lv++ +     H+++Y gn+
  EHT97847.1 139 GRPYGWG-NYNFYNDCSAEMRSLMMPFGIFLPRNSAAQiqaaarivdlsqeDTSTRLRYLTEHGRPFTTLVYIPG-----HIMLYTGNT 221
                 89*****.777799************************9999999999987444444577888888889999999.....999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1973.86
//
Query:       EHT97848.1  [L=227]
Description: hypothetical protein CKS_5453 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   12.8   0.5        0.2   11.8   0.5    1.6  1  FAINT     Domain of unknown function, DUF529


Domain annotation for each model (and alignments):
>> FAINT  Domain of unknown function, DUF529
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   1.1e-05       0.2      32      64 ..     191     226 ..     189     227 .] 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
       FAINT  32 gykctkvvy...kdkviWkaeddeeyvslvtvsydg 64 
                 +y++++v +   ++  iWk+ed ++ +++ + ++++
  EHT97848.1 191 NYFIDQVLDfnlGGLFIWKYEDLKDEHYKLIKDRLW 226
                 9****************************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1656.17
//
Query:       EHT97849.1  [L=253]
Description: N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-24   84.4   0.0    1.4e-23   83.7   0.0    1.3  1  Amidase_2     N-acetylmuramoyl-L-alanine amidase
    0.00022   21.4   0.0    0.00046   20.3   0.0    1.6  1  PG_binding_1  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   1.6e-27   1.4e-23       3     125 ..      17     158 ..      16     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.6e-27
                 ESEEEEEEEEBSS.-HHHHHHHHHHSHHHHTTTS.S-SEEE-SSSS............EEESS-TTCEESSSSS......EHCHHGEEEEEESSTTE.. CS
   Amidase_2   3 rpidfiviHhtagssaagalavaaaeyaastngsigyhylidkdGt............iyqlvdengrawHagd......kggNdnsigIElvgngd.. 81 
                 r+++f+++H+ta + +++++ +++ +       s+++hyl+ +  +            i++lvden+rawHag       +++Nd+sigIE v+  +  
  EHT97849.1  17 RRVRFLIMHYTALD-FENSIIALTGS-------SVSAHYLVPDPSDksyagagfkdmrIFNLVDENERAWHAGVsswagrSNLNDTSIGIEAVNLATdn 107
                 689********985.76666554443.......3569****66644456666667777*************999999999***************99** PP

                 ....EESCHHHHHHHHHHHHHHHHHHHH.TEEEGGGEEEHHHH...TB-TTC CS
   Amidase_2  82 ....gkeppteaqyealakLvaallkry.gippdrrvvgHsdi...rktdPg 125
                     +  p+++ q++a+++L+  +l+ry +i+p + vvgHsdi   rk+dPg
  EHT97849.1 108 ngvfTFPPYNPVQIDAIKELALNILQRYpDITPVN-VVGHSDIapgRKSDPG 158
                 *****************************9*9877.*****999*******9 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.2e-08   0.00046      11      57 .]     200     245 ..     196     245 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.2e-08
                   HHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST.-SSSBSHHHHHHH CS
  PG_binding_1  11 yLsrlGylsgpadgtfgpateeaVkefQqffgLp.vtGildpaTlaal 57 
                   +L+r+Gy  ++ d   +++ ++ +++fQ +f+    +G+ld++T a+l
    EHT97849.1 200 MLKRYGY--DTSDSGSDAGYAQLIRAFQLHFRPCnYSGKLDTETAAIL 245
                   69*****..8******************8888877**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1873.45
//
Query:       EHT97850.1  [L=86]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-10   41.4   0.1    4.9e-10   39.3   0.0    1.8  2  HTH_7         Helix-turn-helix domain of resolvase
    1.9e-06   28.1   0.2    3.6e-06   27.1   0.1    1.5  2  Resolvase     Resolvase, N terminal domain
    2.7e-05   23.8   0.5    5.3e-05   22.9   0.0    1.6  2  HTH_38        Helix-turn-helix domain
      8e-05   22.6   0.1    0.00032   20.7   0.0    1.8  2  HTH_29        Winged helix-turn helix
     0.0002   21.2   0.0    0.00031   20.6   0.0    1.3  1  HTH_11        HTH domain
    0.00029   21.4   0.1    0.00037   21.1   0.1    1.1  1  HTH_32        Homeodomain-like domain
    0.00036   20.7   0.0     0.0005   20.3   0.0    1.1  1  UPF0122       Putative helix-turn-helix protein, YlxM / p13 l
    0.00082   19.1   0.0      0.002   17.9   0.0    1.7  1  HTH_23        Homeodomain-like domain
    0.00095   19.2   0.1     0.0016   18.4   0.1    1.6  1  HTH_22        HTH domain
     0.0015   18.7   0.0     0.0031   17.7   0.0    1.6  1  HTH_17        Helix-turn-helix domain
      0.003   17.4   0.0     0.0047   16.8   0.0    1.3  1  HTH_5         Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
       0.01   15.5   0.5      0.021   14.5   0.1    1.7  2  Sigma70_r4_2  Sigma-70, region 4
      0.011   15.7   0.0      0.016   15.1   0.0    1.3  1  MarR          MarR family
      0.011   15.5   0.1      0.042   13.7   0.0    1.9  2  HTH_IclR      IclR helix-turn-helix domain
      0.015   15.2   0.0      0.019   14.9   0.0    1.3  1  HTH_6         Helix-turn-helix domain, rpiR family
      0.017   14.9   0.0      0.033   13.9   0.0    1.5  1  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas
      0.017   15.2   0.0      0.032   14.4   0.0    1.5  1  HTH_28        Helix-turn-helix domain
      0.018   14.8   0.1      0.035   13.8   0.0    1.5  2  HTH_psq       helix-turn-helix, Psq domain
      0.023   14.5   0.0      0.039   13.7   0.0    1.4  1  HTH_DeoR      DeoR-like helix-turn-helix domain
      0.024   14.4   0.0       0.03   14.1   0.0    1.1  1  DUF3574       Protein of unknown function (DUF3574)
      0.038   14.2   0.0      0.055   13.6   0.0    1.2  1  HTH_Tnp_1_2   Helix-turn-helix of insertion element transposa
      0.039   13.8   0.0      0.049   13.5   0.0    1.2  1  TrmB          Sugar-specific transcriptional regulator TrmB
      0.051   13.5   0.0      0.095   12.7   0.0    1.5  1  HTH_36        Helix-turn-helix domain
      0.061   13.9   0.0       0.13   12.9   0.0    1.6  2  Mga           Mga helix-turn-helix domain
      0.069   13.0   0.0      0.077   12.9   0.0    1.2  1  Sigma70_ECF   ECF sigma factor
      0.072   13.4   0.0        0.1   12.9   0.0    1.2  1  NUMOD1        NUMOD1 domain
      0.099   12.6   0.0       0.13   12.2   0.0    1.5  1  HTH_Crp_2     Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.6   1.1e+03      13      25 ..      16      28 ..      13      29 .. 0.79
   2 !   39.3   0.0   7.4e-13   4.9e-10       1      43 [.      36      79 ..      36      80 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.6
                GGGSSTTTT--ST CS
       HTH_7 13 rvvkLleeGisis 25
                 ++ + +eG++i+
  EHT97850.1 16 LIRLRTREGMAIA 28
                6778889999995 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 7.4e-13
                S---SS-HHHHGGGGSSTTTT.--STTTSSSS---SSSS--SS- CS
       HTH_7  1 GRpsklskndinrvvkLleeG.isiskIAkevnisRsTvYRyla 43
                G  +kls++++ ++ ++++ G +sis++A+ + +sR T+YR la
  EHT97850.1 36 GKQPKLSDKQQKELCRMHKTGeYSISDLAELFSVSRPTIYRTLA 79
                6679*************************************886 PP

>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   5.5e-09   3.6e-06     113     145 ..       1      33 [.       1      34 [. 0.96
   2 ?   -1.8   0.0       4.4     3e+03      19      32 ..      45      58 ..      37      82 .. 0.54

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 5.5e-09
                 HHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 113 lllqilaalaeferelirertkeglaaakakGk 145
                 +++++la++aefe +lir rt+eg+a a+akGk
  EHT97850.1   1 MFFNVLATFAEFEGDLIRLRTREGMAIARAKGK 33 
                 699*****************************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.4
                HHHHHHHH-S--.. CS
   Resolvase 19 Qkealrayakengl 32
                Q+++l + +k  ++
  EHT97850.1 45 QQKELCRMHKTGEY 58
                33333333333333 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       4.3   2.8e+03      19      28 ..      23      29 ..      17      33 .. 0.61
   2 !   22.9   0.0     8e-08   5.3e-05       1      43 [.      37      80 ..      37      80 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
      HTH_38 19 eGlslreIAr 28
                eG+   +IAr
  EHT97850.1 23 EGM---AIAR 29
                555...5666 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 8e-08
      HTH_38  1 kykhLsleeReeIerllaeG.lslreIArrLgrspsTIsRElkR 43
                k+ +Ls  +  e+ r+++ G +s+++ A +  +s+ TI+R l R
  EHT97850.1 37 KQPKLSDKQQKELCRMHKTGeYSISDLAELFSVSRPTIYRTLAR 80
                6889************************************9988 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.5   9.8e+02      43      61 ..      27      45 ..      16      48 .. 0.51
   2 !   20.7   0.0   4.8e-07   0.00032       6      35 ..      51      80 ..      46      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.5
      HTH_29 43 alldrrrsgrprn.rlseeq 61
                 ++  +++ r++  +ls+ q
  EHT97850.1 27 IAR-AKGKLRGKQpKLSDKQ 45
                222.3333344444577766 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 4.8e-07
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkr 35
                ++++ G++++s++A+l  +sr+t+yr+l r
  EHT97850.1 51 RMHKTGEYSISDLAELFSVSRPTIYRTLAR 80
                89**************************98 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.6e-07   0.00031      11      39 ..      53      81 ..      44      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.6e-07
      HTH_11 11 eargpisgeeLAeeLnvSrrtvrrdIkaL 39
                +++g  s+++LAe ++vSr t++r ++++
  EHT97850.1 53 HKTGEYSISDLAELFSVSRPTIYRTLARI 81
                566779*******************9986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   5.6e-07   0.00037      11      73 .]      22      78 ..      16      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.6e-07
      HTH_32 11 eeGle.gLkdrprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73
                +eG++ + +  + rg+ +klsd ++++++++ ++  ++s + la+        +vS+ t+yr L
  EHT97850.1 22 REGMAiARAKGKLRGKQPKLSDKQQKELCRMHKTG-EYSISDLAELF------SVSRPTIYRTL 78
                577776666668889999**************555.9********88......9********97 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.6e-07    0.0005      19      57 ..      43      81 ..      37      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.6e-07
     UPF0122 19 TekqanylelyyadDlSlsEiAeefnvsrqavydnikrt 57
                 ++q++  +++ + ++S+s++Ae f vsr ++y ++ r+
  EHT97850.1 43 DKQQKELCRMHKTGEYSISDLAELFSVSRPTIYRTLARI 81
                355778899************************999886 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     3e-06     0.002      17      40 ..      57      80 ..      42      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3e-06
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkr 40
                 +s+++ A+++ vsr T+yr l r
  EHT97850.1 57 EYSISDLAELFSVSRPTIYRTLAR 80
                689******************998 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.5e-06    0.0016      43      62 ..      59      78 ..      26      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.5e-06
      HTH_22 43 avekvAekLgiSraTvYryL 62
                +++ +Ae +++Sr+T+Yr L
  EHT97850.1 59 SISDLAELFSVSRPTIYRTL 78
                7899**************88 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.7e-06    0.0031       2      23 ..      58      80 ..      57      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.7e-06
      HTH_17  2 ltveEaAelLgvsrstvyr.lir 23
                ++++++Ael+ vsr t+yr l+r
  EHT97850.1 58 YSISDLAELFSVSRPTIYRtLAR 80
                89****************83544 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.1e-06    0.0047      13      37 ..      54      79 ..      47      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.1e-06
                T.SSEEHHHHHHHHTS-HHHHHHHHH CS
       HTH_5 13 e.gelcvcelaeelglsqstvShHLk 37
                + ge+++++lae + +s++t+ + L+
  EHT97850.1 54 KtGEYSISDLAELFSVSRPTIYRTLA 79
                369******************98776 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.9   2.6e+03      47      54 .]      27      34 ..      25      38 .. 0.58
   2 ?   14.5   0.1   3.2e-05     0.021      14      49 ..      45      80 ..      40      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.9
                  HHHHHHHH CS
  Sigma70_r4_2 47 lsRArkkL 54
                  ++RA+ kL
    EHT97850.1 27 IARAKGKL 34
                  45555554 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.2e-05
                  HHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 14 rqreifllryleglsykEIAellgisegtVksrlsR 49
                  +q+e   ++   ++s+ + Ael+ +s  t+++ l+R
    EHT97850.1 45 QQKELCRMHKTGEYSISDLAELFSVSRPTIYRTLAR 80
                  66777789**************************99 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.4e-05     0.016       5      40 ..      45      80 ..      41      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHH CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldr 40
                q + L+  +  g+ s+s+La+ ++vs++t+ r+l r
  EHT97850.1 45 QQKELCRMHKTGEYSISDLAELFSVSRPTIYRTLAR 80
                5566888999********************999976 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         2   1.3e+03       8      19 ..       5      16 ..       3      35 .. 0.62
   2 ?   13.7   0.0   6.3e-05     0.042      14      39 ..      53      78 ..      52      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2
                HHCT-CTTBSS- CS
    HTH_IclR  8 iLdalaeapqel 19
                +L  +ae  ++l
  EHT97850.1  5 VLATFAEFEGDL 16
                666666655443 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.3e-05
                TTBSS-BHHHHHHHHTS-HHHHHHHH CS
    HTH_IclR 14 eapqeltlselArrtglpkStvhRlL 39
                + ++e ++s+lA+ + ++++t +R L
  EHT97850.1 53 HKTGEYSISDLAELFSVSRPTIYRTL 78
                568999******************88 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.9e-05     0.019      29      57 ..      52      80 ..      28      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-05
                S---TT--HHHHHHHTT--HHHHHHHH-- CS
       HTH_6 29 pdkaielsikalAkaaavSeativrfakk 57
                 +k  e si++lA+  +vS++ti r    
  EHT97850.1 52 MHKTGEYSISDLAELFSVSRPTIYRTLAR 80
                6788899****************996555 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.9e-05     0.033      23      43 ..      61      81 ..      58      83 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-05
   HTH_Tnp_4 23 qdLayrFgvsestvsrifhkw 43
                +dLa +F vs++t++r+  ++
  EHT97850.1 61 SDLAELFSVSRPTIYRTLARI 81
                69**************98765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.8e-05     0.032      11      35 ..      55      80 ..      41      83 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-05
      HTH_28 11 aGh.svreaArelgisrrtvyrWikr 35
                 G+ s++++A+++ +sr t+yr + r
  EHT97850.1 55 TGEySISDLAELFSVSRPTIYRTLAR 80
                4778*****************97765 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.6   5.7e+03      14      22 ..      23      30 ..      20      30 .. 0.68
   2 ?   13.8   0.0   5.3e-05     0.035      14      41 ..      55      82 ..      48      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.6
     HTH_psq 14 nGkmSirkA 22
                +G m i++A
  EHT97850.1 23 EG-MAIARA 30
                55.777776 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.3e-05
     HTH_psq 14 nGkmSirkAArkYgiPrsTLwrrkrgky 41
                +G+ Si+ +A ++ ++r+T++r + ++ 
  EHT97850.1 55 TGEYSISDLAELFSVSRPTIYRTLARIG 82
                6889*****************9888775 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.9e-05     0.039       9      35 ..      52      78 ..      45      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.9e-05
    HTH_DeoR  9 lkqqgklsveelvellgvSeaTiRRDL 35
                  + g  s+ +l+el+ vS  Ti R L
  EHT97850.1 52 MHKTGEYSISDLAELFSVSRPTIYRTL 78
                5788999****************8765 PP

>> DUF3574  Protein of unknown function (DUF3574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.6e-05      0.03      21      78 ..       8      65 ..       6      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
     DUF3574 21 efqrFvdeevtPrFpdGltvldakGqwrdetgalirekskvlillhpdteakeariee 78
                 f++F  + +  r ++G+ +  akG+ r+++ +l  +++k l+ +h+  e + ++++e
  EHT97850.1  8 TFAEFEGDLIRLRTREGMAIARAKGKLRGKQPKLSDKQQKELCRMHKTGEYSISDLAE 65
                699999999*********************************9999988877666655 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.2e-05     0.055       4      45 ..      37      76 ..      34      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.2e-05
                 HHHHS-HHHHH.HHHHHHHHHH--S-HHHHHHHHTS-HHHHHH CS
  HTH_Tnp_1_2  4 kldeLtakQkk.aaellvendyekltldeiaeevgvsrsTlyk 45
                 k ++L+ kQ+k +  +  + +y   +++++ae   vsr T+y+
   EHT97850.1 37 KQPKLSDKQQKeLCRMHKTGEY---SISDLAELFSVSRPTIYR 76
                 5666766655416777788888...*****************8 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.3e-05     0.049      19      46 ..      54      81 ..      41      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.3e-05
                HHCCCHHCHHCCCTTSSCHCHHHHHHHH CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsL 46
                k g+ +++++ae   v+r+++Y++L + 
  EHT97850.1 54 KTGEYSISDLAELFSVSRPTIYRTLARI 81
                6789999******************875 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014     0.095      14      47 ..      49      79 ..      47      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
      HTH_36 14 lasfanknggcfpsqetlakrlglsknTvsraik 47
                l++    +++   s ++la+++ +s+ T++r ++
  EHT97850.1 49 LCRMHKTGEY---SISDLAELFSVSRPTIYRTLA 79
                5666656666...9*****************986 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       8.3   5.5e+03      64      76 ..      26      38 ..      18      42 .. 0.74
   2 ?   12.9   0.0   0.00019      0.13      28      58 ..      55      85 ..      44      86 .] 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.3
                EEETTCCEEES-H CS
         Mga 64 eltkknlklrGdE 76
                 + + ++klrG++
  EHT97850.1 26 AIARAKGKLRGKQ 38
                5667788999986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00019
                HSEEEHHHHHHHCT--HHHHHHHHHHHHHHC CS
         Mga 28 eeevsieelaqelyiSestlkrkikelnklL 58
                + e si +la+ + +S+ t++r ++++  ++
  EHT97850.1 55 TGEYSISDLAELFSVSRPTIYRTLARIGSRI 85
                56789*********************98876 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012     0.077     135     174 ..      40      80 ..      18      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
  Sigma70_ECF 135 sldpeqarlvelrkleG.lsveEiAeklgvskrtverrlal 174
                  +l+++q +++  +  +G +s+ ++Ae + vs+ t++r la 
   EHT97850.1  40 KLSDKQQKELCRMHKTGeYSISDLAELFSVSRPTIYRTLAR 80 
                  467777777776666665*******************9975 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00016       0.1      18      37 .]      59      78 ..      58      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
      NUMOD1 18 SireAakyLgishntInkyl 37
                Si+++a+ + +s++tI++ l
  EHT97850.1 59 SISDLAELFSVSRPTIYRTL 78
                9***************9876 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002      0.13      21      44 ..      57      80 ..      16      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
                EHHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilse 44
                  +  +lA++  ++r t+ r+l++
  EHT97850.1 57 EYSISDLAELFSVSRPTIYRTLAR 80
                56778****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 635.38
//
Query:       EHT97851.1  [L=1015]
Description: transposase Tn3 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.3e-101  340.2   0.0   1.7e-101  339.9   0.0    1.2  1  DDE_Tnp_Tn3  Tn3 transposase DDE domain
    2.3e-34  118.6   0.1    1.1e-33  116.4   0.1    2.3  1  DUF4158      Domain of unknown function (DUF4158)


Domain annotation for each model (and alignments):
>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.9   0.0  1.9e-105  1.7e-101       1     389 []     602     994 ..     602     994 .. 0.98

  Alignments for each domain:
  == domain 1  score: 339.9 bits;  conditional E-value: 1.9e-105
  DDE_Tnp_Tn3   1 DlLlevdawtgfleafthlsgreakskdekerllaallaeGtnlGlkkmaraipglsrdqLatvnrryireetlraAnaaivnaqaklplaklWgdgt 98 
                  D+++ v+++++fl a+++l+ r+ak+++++++l+a+++a+++n G + mar ++++  + L+t+ ++y+r  +l +An++i++a++ lp++ l+  + 
   EHT97851.1 602 DVFRFVNNQCRFLPAMKPLQPRYAKKEADADSLMAVIVAQAMNHGNHVMAR-TSDIPFHVLETTYEQYLRLASLLTANDCITDAIEVLPVFPLYSFDP 698
                  8999***********************************************.******************************************9877 PP

  DDE_Tnp_Tn3  99 ...taSsDgqkfevseqnllaevnpryfgkekGvtiythvsdqyialysqvisaterealyvldgllrnesdlepeelatDthGysdvvFallhllgf 193
                       ++Dgqkf+v++ +++a+++ +yfg++kG+++yt++ + +i+++  +i ++++e ++v+d+++rn+s ++p ++++D+h++++++Fa+lh++g+
   EHT97851.1 699 etlYGAVDGQKFGVERPTVKARYSRKYFGRGKGMVAYTLLCN-HIPINGYLIGTNDYEGHHVFDIWYRNTSAVKPVAITGDMHSINKANFAILHWFGL 795
                  7799**************************************.******************************************************* PP

  DDE_Tnp_Tn3 194 klaPRlrdlkdq..klyrpdakadykeldalltkkinldlIeehwddllrlaaSiklgkvsastilrkLssysrqnplykAlrelGriikTlfllrYl 289
                  ++ P + dl++q  +ly +++ ++yk+      ++i+ldlI+ + ++l r++a++ l+++++ t++rkL +y   np+ +A+ e++r+i+++++l+Yl
   EHT97851.1 796 RFEPHFTDLNRQlpELYCTRELSTYKKCLIQPAGQIDLDLIACEKNNLERIVATLGLKEMTQGTLIRKLCTYTTANPTRQAVFEYDRLIRSIYTLKYL 893
                  *************************8776666699*************************************************************** PP

  DDE_Tnp_Tn3 290 ddeelRreiqaqlnkgEsrhalaraiff.gkegeirerrreeqekrlsalrLvanaivlwNtlylsealeelraegeevkdellarlsplawehinll 386
                  +d++l r+i+++ n++Es+h+l+ a++  g+++e++++++ e ++++++ rL+ naiv++N+++ls++le+l+aeg++   e l+r+sp+aw+hi l+
   EHT97851.1 894 RDPQLERNIHRSQNRIESYHQLRAAVAKvGGKKELTGKNDIETDISNQCGRLICNAIVYYNSAILSRLLERLEAEGNDKGIEALTRISPVAWQHILLN 991
                  **************************8615667***************************************************************** PP

  DDE_Tnp_Tn3 387 GeY 389
                  G+Y
   EHT97851.1 992 GHY 994
                  **9 PP

>> DUF4158  Domain of unknown function (DUF4158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.1   1.3e-37   1.1e-33       2     166 .]      17     179 ..      16     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 1.3e-37
     DUF4158   2 LtdeereallrlptdseeelaryftLsdadlalinsrrgpanrlgfavqLgyfrylgrflsdleevpaevvefiaeqlgledpsalakyasreqtrreh 100
                 L+++e eal++lp+++++++ +y  L++ +l l   r+g++ ++++++q++yf++++ f++ + + ++++++fi ++++ +  + l++ + ++++r+ +
  EHT97851.1  17 LNNAELEALYGLPDFDDAQRLEYLALDEYELVLTCGRQGRHAQIYCILQIAYFKAKHLFFRFGWSDVKDDCNFILSRYFHG--EPLPEQSPTKHERYAQ 113
                 899**********************************************************666999*************9..99999667******** PP

     DUF4158 101 laeIrellgyrpfteadlreleewlaqlAtetdrpkaLfdaaieeLrqrkillPgystLerlvaea 166
                 +++I++l+gyrp+++a   +le ++ q++++   p +++ ++i +L+++ki++Pgy+tL++lv+++
  EHT97851.1 114 REKICALYGYRPWSSALSSQLEYQAIQIVRRDVTPGFVATELIIWLNEHKIIRPGYTTLQELVSRV 179
                 ***************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1015 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 7228.94
//
Query:       EHT97852.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  327.0   3.8    3.8e-97  325.2   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    5.4e-18   64.9   0.1    2.2e-17   63.0   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    6.8e-11   42.8   8.3    1.5e-10   41.7   8.3    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.041   13.4   2.0      0.052   13.1   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   12.3   6.9      0.071   11.6   6.9    1.3  1  FUSC             Fusaric acid resistance protein family
      0.054   12.7   1.5       0.11   11.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.15   12.4   3.6       0.93    9.9   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   12.0   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.7   5.7       0.25   11.1   5.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.19   10.9   0.3       0.32   10.2   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.22   11.2   2.2       0.81    9.4   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.23   11.2  10.2       0.38   10.5  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.29   11.5   3.7       0.55   10.6   1.8    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.47   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.55   10.4   2.4       0.92    9.7   0.2    2.3  2  Zn-ribbon_8      Zinc ribbon domain
          1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
          4    6.9   7.4        9.4    5.7   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.8    7.2   8.7         12    6.6   1.6    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.4      0.11        99     167     214 ..      34      82 ..      21     121 .. 0.47
   2 !  325.2   0.0  4.2e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   + i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT97852.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   46666666667777777777763334432...33333333333333322211 PP

  == domain 2  score: 325.2 bits;  conditional E-value: 4.2e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97852.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97852.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97852.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   2.4e-20   2.2e-17       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.4e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL +++d +p+++l++LLPW
      EHT97852.1 479 SLIGTCRLNGVEPEAWLRYVLGHIQD-WPVNRLHDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.8e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97852.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   8.3   1.6e-13   1.5e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.6e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LP+e+
   EHT97852.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPHET 121
                  79*****************966655666666666777888888888888999999******************996 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   5.8e-05     0.052     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.4   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97852.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334444455555555566666677789999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97852.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.9   7.9e-05     0.071     213     294 ..       4      89 ..       1     124 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.9e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97852.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00012      0.11      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97852.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3     0.001      0.93      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT97852.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97852.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   2.3e+03      26      52 ..      16      42 ..       9      60 .. 0.74
   2 ?    3.2   0.0     0.093        83      15      53 ..      64     102 ..      54     108 .. 0.81
   3 ?    5.1   0.0     0.023        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
         UME 26 laekkraikaleeliklagssissalp 52
                l+e++ +i+ + e  +l++++++ ++ 
  EHT97852.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYAS 42
                678888888888888888888766554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.093
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97852.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97852.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.7   0.00028      0.25     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97852.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00034      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97852.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00036      0.32      24      76 ..      37      91 ..      32     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97852.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00091      0.81     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1       0.2   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00091
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT97852.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97852.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.2   0.00042      0.38      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97852.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00061      0.55       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00061
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT97852.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT97852.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0011      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHT97852.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2     0.001      0.92      23      36 ..     125     138 ..     118     141 .. 0.79
   2 ?   -0.5   0.2       1.6   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.001
  Zn-ribbon_8  23 dapltaCPeCgsev 36 
                   +++t+CP+Cg+e+
   EHT97852.1 125 SPAETTCPACGGEL 138
                  467899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97852.1 167 ACCSCDHI 174
                  35555554 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0018       1.6      12      92 ..      13      95 ..       7     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97852.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55566667888999999999999999999999999999999999997744224445555555555555555555777776655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.4      0.01       9.4      71     152 ..      14      97 ..       2     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97852.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666667777888889999999998877644677888999**********************998766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.6     0.014        12      22      53 ..      12      43 ..       9      65 .. 0.88
   2 ?    2.5   1.7      0.25   2.3e+02      34      57 ..      68      91 ..      44     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97852.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97852.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888988888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1468  (0.0818785); expected 358.6 (0.02)
Passed bias filter:                     1063  (0.0592894); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 3606.70
//
Query:       EHT97853.1  [L=50]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-12   44.9   0.0    9.4e-12   44.7   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   5.2e-16   9.4e-12      59     100 ..       1      41 [.       1      42 [. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.2e-16
   TnpB_IS66  59 llykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 +++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97853.1   1 MFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 41 
                 689***********7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 383.52
//
Query:       EHT97854.1  [L=99]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   40.4   0.0    5.4e-10   39.4   0.0    1.5  2  HTH_Tnp_1  Transposase
     0.0054   16.5   0.0     0.0072   16.1   0.0    1.2  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.044   13.9   0.0    1.3  1  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0     9e-14   5.4e-10      21      64 ..       2      51 ..       1      63 [. 0.82
   2 ?   -2.5   0.0       1.1   6.6e+03      36      50 ..      83      97 ..      81      98 .. 0.65

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 9e-14
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae......feltale 64
                +pg+sv+++Ar+ ++++n L++Wrr y+++++ +pa+       +l+a e
  EHT97854.1  2 QPGVSVAQLARENNINDNLLFNWRRRYQQELSGTPAStpalipVTLAATE 51
                89***********************************7777743333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
   HTH_Tnp_1 36 spnqLykWrrqyreg 50
                 p+ L + +r+ ++g
  EHT97854.1 83 TPELLQTLIREMQGG 97
                567777777777655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0072      17      43 ..       4      31 ..       1      39 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryr.e 43
                G sv++ Are +++ + + +w++ry+ e
  EHT97854.1  4 GVSVAQLARENNINDNLLFNWRRRYQqE 31
                89***********************523 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.3e-06     0.044      12      39 ..       4      31 ..       1      33 [. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-06
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeeg 39
                G+sv+++Are +i+   +  W++ry+++
  EHT97854.1  4 GVSVAQLARENNINDNLLFNWRRRYQQE 31
                89***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 743.12
//
Query:       EHT97855.1  [L=73]
Description: hypothetical protein CKS_5446 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 548.66
//
Query:       EHT97856.1  [L=130]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-11   42.4   0.8      1e-10   42.0   0.8    1.2  1  Y2_Tnp           Putative transposase
  ------ inclusion threshold ------
      0.097   12.3   0.0       0.15   11.7   0.0    1.3  1  Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain


Domain annotation for each model (and alignments):
>> Y2_Tnp  Putative transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.8   1.1e-14     1e-10     134     180 ..       3      49 ..       1      52 [. 0.90

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.1e-14
      Y2_Tnp 134 frlkdkrrkktktvtlepeefirrllahVppkgfkriRyyGvlarvk 180
                  ++ d+r+ ++++ tl++e++i r++ h+p k+fk++RyyG+l+++k
  EHT97856.1   3 HHYYDYRTYQYRQQTLTQEDMIGRYISHIPAKHFKMVRYYGFLSSRK 49 
                 5688999*************************************444 PP

>> Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05      0.15       4      15 ..      84      95 ..      82     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.6e-05
                     T-EEE-TTT--E CS
  Desulfoferrod_N  4 levYkCevCGni 15
                     ++ YkC +CGn 
       EHT97856.1 84 TDPYKCILCGNR 95
                     577********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 985.90
//
Query:       EHT97857.1  [L=206]
Description: putative resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-29  101.5   0.5    7.8e-29  100.7   0.5    1.4  1  Resolvase        Resolvase, N terminal domain
    2.5e-05   24.0   0.1    5.4e-05   22.9   0.1    1.6  1  LacI             Bacterial regulatory proteins, lacI family
     0.0019   18.5   3.5      0.014   15.7   0.1    2.8  2  HTH_31           Helix-turn-helix domain
     0.0027   17.7   1.4     0.0061   16.6   0.0    2.3  2  HTH_3            Helix-turn-helix
      0.003   17.3   0.4     0.0097   15.7   0.1    2.1  1  HTH_23           Homeodomain-like domain
     0.0036   17.0   0.1     0.0095   15.7   0.1    1.7  1  HTH_38           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   15.2   0.1      0.038   14.0   0.1    1.6  1  Pro_Al_protease  Alpha-lytic protease prodomain
      0.044   13.9   0.2       0.13   12.3   0.0    1.9  2  HTH_7            Helix-turn-helix domain of resolvase
      0.094   12.1   0.1       0.24   10.8   0.1    1.6  1  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
       0.12   12.3   0.0       0.57   10.1   0.0    1.9  2  Stn1_C           Telomere capping C-terminal wHTH


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.5   4.4e-32   7.8e-29       1     146 []       3     159 ..       3     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 4.4e-32
                 EEEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEE CS
   Resolvase   1 aigYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslv 98 
                 ++gY+R St+ qd    r k+al+++a+++g +i+ +++D+ +SG+++ Rp+l rll+++++  gd++++e++dRL+R   + +  l +++ +k++ +v
  EHT97857.1   3 IFGYLRASTSGQD--ATRAKNALKQFARQHGQRIAGWYVDN-ASGTTMTRPELLRLLDDAEP--GDAILIEQVDRLSRLdDTGWEILRKQITDKQLAIV 96 
                 589**********..***************999********.********************..**************9778888888899******** PP

                 ESS.............SS-....---HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase  99 sldeg...........idt....stpmgrlllqilaalaeferelirertkeglaaakakGkk 146
                 sld +            d      ++ + +ll++laa+a+ + e++r+r++eg+ +aka+Gk+
  EHT97857.1  97 SLDLPtshlalasvvgDDFtrsmLKAVNGMLLDMLAAIARKDYEDRRRRQAEGISKAKAEGKY 159
                 ***855788877776633322223333555*******************************96 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1     3e-08   5.4e-05       2      23 ..     183     204 ..     182     206 .] 0.91

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3e-08
                 HHHHHHHCTS-HHHHHHHCTTS CS
        LacI   2 ikDVArlAGVSkaTVSrvLnnk 23 
                 +++ ArlAGVSk+TV rv nn+
  EHT97857.1 183 LRETARLAGVSKMTVIRVCNNA 204
                 7899****************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.0      0.12   2.1e+02       7      20 ..     142     155 ..     142     160 .. 0.88
   2 !   15.7   0.1     8e-06     0.014       5      36 ..     171     202 ..     170     206 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
      HTH_31   7 ralReraGLsqeev 20 
                 r++R+++G+s++ +
  EHT97857.1 142 RRRRQAEGISKAKA 155
                 89*********987 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 8e-06
      HTH_31   5 lLralReraGLsqeevAerlgvsestlsrlEq 36 
                 l r+lR  +G s++e A+++gvs+ t+ r+ +
  EHT97857.1 171 LIRTLRLNHGKSLRETARLAGVSKMTVIRVCN 202
                 689*********************99988877 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4       1.3   2.4e+03       2      13 ..     142     153 ..     142     156 .. 0.81
   2 !   16.6   0.0   3.4e-06    0.0061       1      32 [.     172     203 ..     172     206 .] 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
                 HHHHHHTTHHHH CS
       HTH_3   2 kelRkqlglsqe 13 
                 +++R++ g+s++
  EHT97857.1 142 RRRRQAEGISKA 153
                 68999****985 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.4e-06
                 HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3   1 lkelRkqlglsqeeLAeklGvsrstisriEnG 32 
                 ++ lR+ +g s++e A+++Gvs+ t+ r  n+
  EHT97857.1 172 IRTLRLNHGKSLRETARLAGVSKMTVIRVCNN 203
                 899***********************999887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.4e-06    0.0097      11      38 ..     172     201 ..     162     206 .] 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.4e-06
      HTH_23  11 llllae..GlsvreIAreLgvsrrTvyrwl 38 
                 ++ l+   G+s re Ar+ gvs++Tv r+ 
  EHT97857.1 172 IRTLRLnhGKSLRETARLAGVSKMTVIRVC 201
                 55555346******************9975 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.3e-06    0.0095      11      41 ..     170     201 ..     166     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
      HTH_38  11 eeIerl.laeGlslreIArrLgrspsTIsREl 41 
                 e I +l l+ G+slre Ar+ g+s+ T+ R +
  EHT97857.1 170 ELIRTLrLNHGKSLRETARLAGVSKMTVIRVC 201
                 67899966*******************99876 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.1e-05     0.038       8      34 ..      18      44 ..      12      46 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
  Pro_Al_protease  8 aakaaLdraaaraaaavtaWyVDvatN 34
                     +ak aL++ a  +++ +++WyVD a+ 
       EHT97857.1 18 RAKNALKQFARQHGQRIAGWYVDNASG 44
                     79*****88888889********9986 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.7   6.7e+03      10      25 ..     138     153 ..     134     154 .. 0.66
   2 ?   12.3   0.0   7.5e-05      0.13       7      43 ..     167     202 ..     161     203 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.7
                 HHGGGGSSTTTT--ST CS
       HTH_7  10 dinrvvkLleeGisis 25 
                 d++  +++ +eGis++
  EHT97857.1 138 DYEDRRRRQAEGISKA 153
                 5555567778888876 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.5e-05
                 -HHHHGGGGSS.TTTT--STTTSSSS---SSSS--SS- CS
       HTH_7   7 skndinrvvkL.leeGisiskIAkevnisRsTvYRyla 43 
                 +k+  + +++L l+ G s +++A+  ++s++Tv R+ +
  EHT97857.1 167 QKH--ELIRTLrLNHGKSLRETARLAGVSKMTVIRVCN 202
                 555..55555437999*****************99976 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.24      26      49 ..     179     202 ..     170     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  HTH_Tnp_ISL3  26 esrsvkavArqlgvSwtTVwrild 49 
                   +++s ++ Ar+ gvS  TV+r+ +
    EHT97857.1 179 HGKSLRETARLAGVSKMTVIRVCN 202
                   4589*****************976 PP

>> Stn1_C  Telomere capping C-terminal wHTH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00032      0.57      85     113 ..      19      47 ..      16      55 .. 0.89
   2 ?   -1.0   0.0      0.88   1.6e+03      66      86 ..     182     202 ..     172     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
      Stn1_C  85 fkeslrkiakqspellksWwidlkseess 113
                  k++l+++a q+ + +  W++d +s +++
  EHT97857.1  19 AKNALKQFARQHGQRIAGWYVDNASGTTM 47 
                 599*******************9987765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.88
      Stn1_C  66 qireklklpelskkliidvfk 86 
                  +re+  l+ +sk+++i v+ 
  EHT97857.1 182 SLRETARLAGVSKMTVIRVCN 202
                 578888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1535.88
//
Query:       EHT97858.1  [L=160]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-05   24.3   0.0    0.00013   21.9   0.0    1.9  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.4e-05   23.7   0.0    5.3e-05   23.4   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0007   20.0   0.0    0.00096   19.5   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.2e-08   0.00013      52     109 ..      67     149 ..      21     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.2e-08
  Acetyltransf_10  52 s.....................hisllfVdpeyrgqGigkaLleaveeeaekdgikl...eltvnasp.yavpfYeklGFkav 109
                      s                      +++l+Vd   +g   gk Ll++++ ++++   ++   ++ v+a + +a++fYe +GF++ 
       EHT97858.1  67 SvshvnlgrslrqnmpdpvpviLLGRLAVDICTQGHSFGKWLLNDAIIRVSNLADQVgikAVMVHAIDdKARQFYEYFGFVQS 149
                      4445555555555556666666689********************999987766666668******999***********986 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.9e-09   5.3e-05      26     117 .]      37     146 ..      10     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 8.9e-09
                     HHHHSTTCEEEEEEETTE..EEEEEEEEEEET..............TSTTEEEEEEEEESGGGTTSSHHHHHHHHHH....HHHHHTTESEEEEE CS
  Acetyltransf_1  26 esfsleaegllvaeedge..liGfisllkipd..............ekggvayieslaVspeyrgkGlGsaLleale....erareegikkivla 100
                     +  +++a++++v++ +g+  ++G+ s+                      +v+ + +laV+   +g+  G+ Ll++++      a + gik++++ 
      EHT97858.1  37 KNQRINASRTFVICLEGTfrVVGYYSIATGSVshvnlgrslrqnmpDPVPVILLGRLAVDICTQGHSFGKWLLNDAIirvsNLADQVGIKAVMV- 130
                     33566788999999999999*****666666666666666666666778999999**********************66655555559999766. PP

                     EETTEHHHHHHHHHTTE CS
  Acetyltransf_1 101 veedndaairlYeklGF 117
                      ++ +d+a+ +Ye +GF
      EHT97858.1 131 -HAIDDKARQFYEYFGF 146
                     .334789*****77**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-07   0.00096      24      75 ..      77     147 ..      42     148 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.6e-07
                     S..........TCTEEEEE-GGGTTSSHHHHHHH.H.....TT...SEEEEEEEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7  24 d..........aeitrlaVdpeyrgkGiGraLle.a.....ae...kgiileqlel.naekaikfYeklGFe 75 
                                  ++rlaVd   +g+  G+ Ll+ a     +     gi+ + ++  ++ ka++fYe +GF+
      EHT97858.1  77 LrqnmpdpvpvILLGRLAVDICTQGHSFGKWLLNdAiirvsNLadqVGIKAVMVHAiDD-KARQFYEYFGFV 147
                     04445555543445569****************97644433113334433222223333.99*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1276.45
//
Query:       EHT97859.1  [L=49]
Description: hypothetical protein CKS_5441 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   28.1   0.1    1.4e-06   28.1   0.1    1.1  1  DUF1778   Protein of unknown function (DUF1778)


Domain annotation for each model (and alignments):
>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   7.9e-11   1.4e-06      35      75 ..       2      42 ..       1      47 [. 0.88

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7.9e-11
     DUF1778 35 eaAekviedherieLseedfqafvaaLdeppkpnprLlkaa 75
                 +A+++i d++++ L+++++qaf++ L++p++  +   +++
  EHT97859.1  2 HEAQNIILDQRVFVLDDARYQAFIEQLEAPVENIEGRHRLM 42
                68****************************99877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 374.26
//
Query:       EHT97860.1  [L=82]
Description: hypothetical protein CKS_5439 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-13   50.0   1.2    1.1e-09   38.2   0.0    2.1  2  TraY      TraY domain


Domain annotation for each model (and alignments):
>> TraY  TraY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.4   1.9e-05      0.34      30      43 ..       2      15 ..       1      19 [. 0.90
   2 !   38.2   0.0     6e-14   1.1e-09       1      42 [.      31      72 ..      31      78 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
        TraY 30 lRLkdHLkrFpdiy 43
                lRL dHLk F+ i+
  EHT97860.1  2 LRLHDHLKLFSRIP 15
                8**********997 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 6e-14
        TraY  1 vtlkLdeetnklLeasaersgRSKrkEAqlRLkdHLkrFpdi 42
                +t++L++ +  +L+  a + gRS+ +EA+lRL dHL r+p+i
  EHT97860.1 31 LTVILTARASTKLSDVAGKAGRSRVQEATLRLHDHLRRVPEI 72
                6899************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 594.18
//
Query:       EHT97861.1  [L=105]
Description: hypothetical protein CKS_5438 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 788.99
//
Query:       EHT97862.1  [L=134]
Description: putative TraA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-07   29.8   0.6    7.4e-07   29.5   0.6    1.2  1  TraA      TraA
  ------ inclusion threshold ------
       0.39   10.7   2.3       0.61   10.1   2.3    1.3  1  CRPA      Chlamydia 15 kDa cysteine-rich outer membrane prote


Domain annotation for each model (and alignments):
>> TraA  TraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.6   8.3e-11   7.4e-07      32     116 ..      40     121 ..      11     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 8.3e-11
        TraA  32 klakvvlpvavliaffpdlamaattatdlmksgdatvkatfgkdssvvkwvvlaevlvgavmymmtknvkflagfaiisvfiavg 116
                 k ak+ +   ++ + +  +a   + a dl k+g+     tfg ds+++ + +laev+   ++y+ ++n    a f +i vfi v 
  EHT97862.1  40 KTAKALFKYVAVPLAIWLAARGMAHADDLTKAGKQDAEDTFGADSTMMYYFMLAEVVLVFLLYLRSHNP---ATFLLIPVFIVVT 121
                 56666665555555555566677789***************************************9995...6777888888775 PP

>> CRPA  Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.3   6.8e-05      0.61      76     114 ..      91     129 ..      85     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.8e-05
        CRPA  76 viaglallfilqaqlganafylliPaviGlvkllvtsls 114
                 ++a ++l+f+l  ++ + a +lliP  i + k++ ++++
  EHT97862.1  91 MLAEVVLVFLLYLRSHNPATFLLIPVFIVVTKIIFAIIA 129
                 68999****************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 996.59
//
Query:       EHT97863.1  [L=101]
Description: TraL family plasmid conjugative transfer pilus assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-25   88.2   1.7    4.2e-25   88.0   1.7    1.0  1  TraL      TraL protein


Domain annotation for each model (and alignments):
>> TraL  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   1.7   2.3e-29   4.2e-25       3      89 ..      11      99 ..       9     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 2.3e-29
        TraL  3 iPrtLddperllfwelDealvillllvvgillgqfviglvlglllvlllrklkkgrgdgfllhllYWylpasllk..fkktPdshiRef 89
                +P+tL +++  ++++ De +++++++++g+++gq+v+glv+++ll+++l+++kkgrg ++ll+++YWylp+sl+k   k +Pds+ R +
  EHT97863.1 11 FPQTLTEQAGPVGLPTDETIALFGPMGWGFWTGQYVTGLVVSILLWVCLKHFKKGRGTTWLLNACYWYLPSSLFKsmYKVIPDSAYRLW 99
                9***************************************************************************99*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 706.52
//
Query:       EHT97864.1  [L=188]
Description: TraE family plasmid conjugative transfer pilus assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-38  131.8   0.0    1.9e-38  131.7   0.0    1.0  1  TraE      TraE protein


Domain annotation for each model (and alignments):
>> TraE  TraE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   1.1e-42   1.9e-38       1     182 []       1     182 [.       1     182 [. 0.97

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 1.1e-42
        TraE   1 mdlkvsesrlknllaqnnllalllavllaanlllgslilratrkqrvvlvPpeikkpftvsaasadaeYleqmtrdvlslalnvtPetvdyqfneLlkl 99 
                 mdlk ++  ++ ++  + +l +l++++l +n+l+ + i ++ + +    +P+ +++pft+s+++ada Yleq +++++ l++nv+Pe+v++++++Ll++
  EHT97864.1   1 MDLKAKRLAARYTSLTFIILLGLFGLSLGGNILAWLQIDTLINSHDETYIPMGFDSPFTLSRNRADANYLEQTAESLVFLRYNVSPESVRANHKALLRF 99 
                 7777777777888889999******************************************************************************** PP

        TraE 100 vapeaygelkkqlaeeaerikksnvssvFypesievdpktltvevrGtlktfvgdkktsserktYrlefsyedgrlrLksfee 182
                 ++ e++++++++la ea+++  +nv+++Fy + +++ p  + v+++Gt ++++g++k   e kt rle +y+ g  ++k+f+e
  EHT97864.1 100 FDNETRPAMQEVLADEAQKVIDNNVTTAFYLSGMDTYPSAGIVDIHGTVQQWIGNRKQLPEDKTVRLELRYQRGMTTIKDFRE 182
                 *********************************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1377.54
//
Query:       EHT97865.1  [L=224]
Description: TraK family plasmid conjugative transfer pilus assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-28  100.1   0.0      2e-28   99.7   0.0    1.0  1  TraK      TraK protein


Domain annotation for each model (and alignments):
>> TraK  TraK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   1.1e-32     2e-28       4     198 ..      15     204 ..      12     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 1.1e-32
        TraK   4 allaallaaaa..hAdqsveasdgaaveialSskepNRiviegdrItdVsvspeggltvek...dettGdvyvkavkrtystkpftlfvttekGatysl 97 
                 + +aa+la+++  hA + + +s++++v++alS+++pN +v++gdrI  V  s++g ++ ++    + +G v ++    t++t pft++v te G t+s+
  EHT97865.1  15 CWCAAVLAEPValHAVN-IPVSPDSQVRVALSNTNPNLLVVPGDRIIAV-DSAQGMFINDNramGQLNGGVQLM----TAQTAPFTFYVRTEGGLTVSV 107
                 6789******9999997.*******************************.999999988666665566666665....5689***************** PP

        TraK  98 tlrpketpaqtivlvpkapkairknasleaaaaeek.aykellvaltravysgrvpagysveevrkrvvllkea.glrltrvreyeGeglrgeeyrlkN 194
                 + +p+ + ++   +++ +p  +     ++a  +e++ +y  ll+ + +av++g+vp+g+++ +v    +++     lr+ + + ++G +lr+++++++N
  EHT97865.1 108 VGVPQKRDGRVLHFISDRPVHH-----EAARRWETSqPYVRLLTDIQKAVLAGKVPEGFAEAPVAAL-PPFSLPaWLRVEPLTMWNGGELRLYRLHVRN 200
                 ***************8883333.....33334666668888******************77555444.544444589********************** PP

        TraK 195 vska 198
                 +++a
  EHT97865.1 201 AGSA 204
                 9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1631.39
//
Query:       EHT97866.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97866.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97866.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97866.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97866.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 748.65
//
Query:       EHT97867.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97867.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 854.90
//
Query:       EHT97868.1  [L=511]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-98  328.2   6.0    3.6e-97  325.2   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.3e-14   53.0   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
      1e-10   42.2   8.3    2.2e-10   41.1   8.3    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0058   15.2   5.1     0.0093   14.6   5.1    1.3  1  FUSC             Fusaric acid resistance protein family
  ------ inclusion threshold ------
      0.011   16.0   5.4      0.087   13.2   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.025   13.8   2.1      0.049   12.8   2.1    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.027   14.1   2.6      0.029   13.9   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.042   13.1   0.9      0.068   12.4   0.9    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.12   12.9   0.5         11    6.5   0.1    2.7  2  PRA-PH           Phosphoribosyl-ATP pyrophosphohydrolase
       0.12   12.4   4.4        3.3    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.24   11.1   3.8       0.31   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.39    9.9   4.4       0.39   10.0   3.3    1.4  2  MIS13            Mis12-Mtw1 protein family
       0.45   10.6  11.4       0.78    9.8  11.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.2  12.8       0.77    9.5  12.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.52   10.5   2.3       0.95    9.6   0.2    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.91    9.7  10.9          9    6.5  10.5    2.1  1  ATG16            Autophagy protein 16 (ATG16)
        1.2    8.9  10.0        1.9    8.2  10.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
          3    8.2   8.8        6.3    7.1   8.8    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        3.4    6.8   4.6        5.3    6.2   4.6    1.2  1  TMPIT            TMPIT-like protein
        3.9    7.8   5.8        1.9    8.8   2.5    2.2  2  WXG100           Proteins of 100 residues with WXG
        4.3    6.8   9.1        9.9    5.7   9.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.6    7.1   9.3        8.2    7.1   1.1    3.1  3  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.2     0.047        36     158     231 ..      27     101 ..      22     111 .. 0.65
   2 !  325.2   0.0  4.6e-100   3.6e-97       2     281 ..     175     460 ..     174     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.047
  DDE_Tnp_IS66 158 vdaeeakkksqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkvlpksklgkai 231
                    +       sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++vl++s ++k +
    EHT97868.1  27 AEYNRLL--SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEVLRQSSARKPL 101
                   4444442..57788888889999999999974445444455555555555555666655.566669999999888865 PP

  == domain 2  score: 325.2 bits;  conditional E-value: 4.6e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97868.1 175 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 271
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97868.1 272 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 367
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97868.1 368 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 460
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     467     504 ..     467     504 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97868.1 467 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 504
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   1.5   4.3e-17   3.3e-14       1      46 []     116     160 ..     116     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 4.3e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97868.1 116 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 160
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   8.3   2.8e-13   2.2e-10       1      68 [.      46     109 ..      46     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.8e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE.ltardpeQleLaleeleaeeaeveakapkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE l+++++ Q   a+e ++a ++e ++       r++  RkpLpa+LPRe+
   EHT97868.1  46 RLKALVAKLQRMQFGKSSEkLREKTARQVREAEERISALQEEMAEV-----LRQSSARKPLPASLPRET 109
                  79*****************966777777777777666666666666.....8899************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   5.1   1.2e-05    0.0093     213     296 ..       4      94 ..       1     124 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale...ad 296
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +    +
  EHT97868.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevlRQ 94 
                 448899**********************************999**********99999666777777777777777777777776644433 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   0.00011     0.087      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    4.4   0.9      0.06        47      33      58 ..      71      96 ..      68     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT97868.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.06
      Csm1_N 33 sqkletkdqeiesLkeqlaeleekvk 58
                +++++  +++i++L+e++ae+  +++
  EHT97868.1 71 ARQVREAEERISALQEEMAEVLRQSS 96
                5789999************9988876 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.1   6.3e-05     0.049      47     106 ..      34      90 ..      25      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97868.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.0   3.8e-05     0.029     144     230 ..      10     110 ..       3     178 .. 0.62
   2 ?   -1.2   0.0       1.6   1.2e+03     125     146 ..     339     372 ..     330     434 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk......... 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l++ +         
    EHT97868.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLRQSSarkplpasl 105
                   334445555555556666666777899999999999888866554399999*************************99844.333333222333333 PP

  Exonuc_VII_L 230 ....e 230
                        
    EHT97868.1 106 pretL 110
                   33330 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97868.1 339 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 372
                   6788888888888887666664444444444432 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   8.8e-05     0.068      24      79 ..      37      94 ..      32     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.8e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqieh 79
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  ++
  EHT97868.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVLRQ 94
                578***************6555323335666777788888999*********997665 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.014        11      18      45 ..      71      98 ..      51     143 .. 0.76
   2 ?    3.6   0.0      0.12        91      57      77 ..     464     484 ..     454     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
                ---HHHHHHHHHHHHHHHHHHHHHT-SC CS
      PRA-PH 18 astaelaslraaligEEavElleaaseg 45
                a + ++a +r  +++EE++E+l ++s+ 
  EHT97868.1 71 ARQVREAEERISALQEEMAEVLRQSSAR 98
                223445555**************99865 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHCT--CHHHHH CS
      PRA-PH  57 llYvtygllvllGidldavfe 77 
                 +lY +++++ l+G+d++  ++
  EHT97868.1 464 ILYSLIVTCRLNGVDPETWLR 484
                 89**************98765 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.3      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    5.0   0.7     0.032        25      22      39 ..      74      91 ..      73     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97868.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.032
     DUF1192 22 veELeerIalLeaEIaRl 39
                v E eerI++L++E a +
  EHT97868.1 74 VREAEERISALQEEMAEV 91
                67889*********9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.31     152     193 ..      17      58 ..       4      66 .. 0.87
   2 ?    1.4   0.3      0.28   2.1e+02      98     129 ..      64      95 ..      61     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97868.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasv 129
                 ++L++  ++++ +a+e +++l++e+ ++l++ 
  EHT97868.1  64 EKLREKTARQVREAEERISALQEEMAEVLRQS 95 
                 67778888899999999999999999988765 PP

>> MIS13  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.3    0.0005      0.39     206     296 ..       8      96 ..       2     105 .. 0.88
   2 ?   -3.7   0.0       7.4   5.8e+03     213     256 ..     365     408 ..     347     412 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0005
                 T-----------S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.CTSTTTSSXXXXXXXXXXXXX..XXXXXXXXX CS
       MIS13 206 seakidsdtqepdtaqrilsdnanveskletkvDeLqdsvhkLdsaskalnelstqklq.klsrllakrskkekkssesrkkstkkLlrgls 296
                 ++a++++ +qe++t+     + a+ +  l+++v + + ++++L++ +  l++++  k   kl+  +a+++++ ++ +++ +    ++lr++s
  EHT97868.1   8 ENARLRALLQEQQTT---IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSSeKLREKTARQVREAEERISALQEEMAEVLRQSS 96 
                 458899999999999...899999*********************9999999887766569999******9999999999999*******99 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.4
                 -----S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       MIS13 213 dtqepdtaqrilsdnanveskletkvDeLqdsvhkLdsaskaln 256
                 +   +++++r+  ++++    ++   D +q +++ L+ +s +++
  EHT97868.1 365 EIRGSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAK 408
                 44555555666677788888888888888888888888888776 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.4     0.001      0.78      37     115 ..      11      91 ..       5      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97868.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  12.8   0.00099      0.77      17     100 ..       5      90 ..       3     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00099
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97868.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9876 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2    0.0012      0.95      23      36 ..     113     126 ..     106     129 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     155     162 ..     142     171 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  23 dapltaCPeCgsev 36 
                   +++t+CP+Cg+e+
   EHT97868.1 113 SPAETTCPACGGEL 126
                  467899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97868.1 155 ACCSCDHI 162
                  35555554 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  10.5     0.012         9      25      98 ..      24      96 ..      10      99 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
       ATG16 25 nrLldrtsaleaenaklekaaasaks..sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrg 98
                +++++  ++l+++ a++ +++++ k+   k ++ +  +++++ +   +k++ ++ + e+++++l+ee+ae++++ +
  EHT97868.1 24 RKMAEYNRLLSQRVAAYASEINRLKAlvAKLQRMQFGKSSEKLR---EKTARQVREAEERISALQEEMAEVLRQSS 96
                45555556666666666555555555542222222222222222...255678*******************9865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.0    0.0025       1.9     114     194 ..      10      94 ..       7      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklvee 194
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++  +
  EHT97868.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLRQ 94 
                 578888777777765557777789**************9862678999********************************99765 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.8     0.008       6.3      10      86 ..      15      95 ..      11     103 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.008
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l++ 
  EHT97868.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLRQS 95
                6777777888899999999*********************966655.23466766666668888888888555444555554 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.6    0.0068       5.3      13      90 ..      14      93 ..       7     100 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0068
       TMPIT 13 eleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllp 90
                +l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l 
  EHT97868.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLR 93
                55566668888999999999999999999999999999999999877442233444455555555555555556666654 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.5    0.0024       1.9      16      79 ..      33      97 ..      18      98 .. 0.84
   2 ?   -2.1   0.1       5.9   4.6e+03      44      59 ..     405     420 ..     396     439 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0024
                HHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 16 fqkqaeeledelqrlkaevdalqsgWsGaaadafqaefe.ewkqaaqklvdaLeeisealkqaan 79
                +++  +   +e++rlka v++lq +  G+++++ ++  + ++++a +++ ++ ee++e l+q+++
  EHT97868.1 33 LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArQVREAEERISALQEEMAEVLRQSSA 97
                56667778899***********99988999999999999899999999999999*******9975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.9
                 HHCHHHHHHHHHHHHH CS
      WXG100  44 aaadafqaefeewkqa 59 
                 ++a+af+  +++w++ 
  EHT97868.1 405 DTAKAFAYLLKQWDAL 420
                 5677787777777765 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.1     0.013       9.9      70     151 ..      13      96 ..       2     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.013
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlt 151
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL q +
    EHT97868.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLRQSS 96 
                   55666777777777777777777788899999999999999998874477888899************************9865 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.1     0.011       8.2      22      53 ..      12      43 ..       9      53 .. 0.87
   2 ?    2.1   0.1      0.38     3e+02      22      45 ..      33      56 ..      33      70 .. 0.81
   3 ?    3.4   1.0      0.16   1.2e+02      36      55 ..      70      89 ..      62     109 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97868.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.38
                HHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllae 45
                L++ va+ + +i rl++ +++l++
  EHT97868.1 33 LSQRVAAYASEINRLKALVAKLQR 56
                789999999999999999988865 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.16
                HHHHHHHHHHT-XXXXXXXX CS
        SlyX 36 lqrqlrllaerlkeleessg 55
                  rq+r+ +er+++l+e+++
  EHT97868.1 70 TARQVREAEERISALQEEMA 89
                44455555555544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1509  (0.0841653); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       156  (0.00870099); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 3346.60
//
Query:       EHT97869.1  [L=50]
Description: hypothetical protein CKS_5430 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 401.02
//
Query:       EHT97870.1  [L=264]
Description: TraF family plasmid conjugative transfer pilus assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-61  206.1   0.0    7.3e-61  205.8   0.0    1.1  1  TraF      F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.0   4.1e-65   7.3e-61       1     224 []      42     254 ..      42     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 205.8 bits;  conditional E-value: 4.1e-65
        TraF   1 GwfwYedppkekeekkekakppkaakpalkeptseesatesaaelrkeleelldkAilnPteenveaylrlqrvaldkaskFaevwqrvllanPeLdyt 99 
                 Gw+wY++p+    + +ek++++ ++        s++++t ++  l+k ++++l++Ail P+ +++++ylrlq++ ++ + +F+++++++ll +P+Ldy+
  EHT97870.1  42 GWHWYNEPQ----PDEEKPDDDTVPL-------SALPPTLQMTLLKKLTQDRLNRAILSPSAQHAADYLRLQSYLVNLSGQFTQSAKKALLLYPDLDYN 129
                 9****9865....3334444443333.......56899************************************************************* PP

        TraF 100 lrrPvsnlarkvlndarkeekeaalkklakeygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvl 198
                 l++  +n+++++++ a+++ ++aa+++l ++ygL++Fyrg+ p++ ++a ++ +f ++ygl++++Vs+dg  +  lp++r+d+gqa r+gv+++Pal+l
  EHT97870.1 130 LEHSRYNSTASLQQTAARQVQTAAIHALGQRYGLFLFYRGNNPVDSQMAASVGQFSQQYGLSLIPVSMDGVRSGALPQTRKDSGQASRMGVNQFPALML 228
                 *************************************************************************99************************ PP

        TraF 199 vdpksqkvvpvaaGllsldeleeril 224
                 v+p s+ + p+a+G++++d+l++r+l
  EHT97870.1 229 VEPGSEHYQPLAYGFMTQDDLARRFL 254
                 ***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.67
# Mc/sec: 1188.37
//
Query:       EHT97871.1  [L=132]
Description: virulence-associated protein C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-15   56.0   0.0    6.1e-15   55.8   0.0    1.0  1  PIN       PIN domain
  ------ inclusion threshold ------
      0.054   14.3   0.0      0.061   14.1   0.0    1.1  1  PIN_3     PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   6.8e-19   6.1e-15       1     120 [.       4     124 ..       4     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 6.8e-19
                 EEE-HHHHHHHHTTSHHHHHHHHHHHTSSEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHHHHHHH.....SBHHH CS
         PIN   1 ivlDTsvliallrgeekaeaarklleeleelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaeialkyg.....llpnD 94 
                 ++lDT+++i  ++++++a +    l +   l++s ++l El+y++++   ++  +++l  ++  +++l +l+ d ++a + ++i+++       ++p+D
  EHT97871.1   4 YMLDTNICIFTIKNKPEAVRQQFNLHR-QQLCISTITLMELIYGAEK---SSAPERNLAVVEGFAARLTVLDYDMHAATHTGQIRAEQAkvgqpIGPYD 98 
                 68*******999999999988888888.*******************...99999999999999*********************************** PP

                 HHHHHHHHHHT-EEE.ESSTH.HHHHH CS
         PIN  95 aliaAtAkehgikliatfDed.frrva 120
                  +ia +A+++g++ + t++ + f+rv+
  EHT97871.1  99 QMIAGHARSRGLIMV-TNNMReFSRVS 124
                 ************999.*9988899987 PP

>> PIN_3  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.8e-06     0.061       2      76 ..       4      81 ..       3     118 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.8e-06
       PIN_3  2 vvlDtnvlldallfdspaarkildaletgaitlvvsprlldElervlarelaypqfklraadkaallakva...ler....k 76
                 +lDtn+ +  +      ++++++ ++ ++ +l++s  +l El + +  ++  p+  l  ++  a++ +v    +++     
  EHT97871.1  4 YMLDTNICIFTIK---NKPEAVRQQFNLHRQQLCISTITLMELIYGA-EKSSAPERNLAVVEGFAARLTVLdydMHAathtG 81
                69*****998888...468999**********************988.5557777888888887888787543322244442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 982.16
//
Query:       EHT97872.1  [L=75]
Description: virulence-associated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-06   25.7   0.0    1.2e-05   25.1   0.0    1.3  1  MazE_antitoxin  Antidote-toxin recognition MazE, bacterial an


Domain annotation for each model (and alignments):
>> MazE_antitoxin  Antidote-toxin recognition MazE, bacterial antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   6.5e-10   1.2e-05       2      41 ..       7      51 ..       6      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 6.5e-10
                    EETTEEEEEE-CCCHHHC......CEECTCEEEEEECTTCCCCCCC CS
  MazE_antitoxin  2 kvGnsgavriPkevrfel......gireGdevelevdgdkiilrpl 41
                     +++s+avr+Pk+v+ +       ++ +G + ++++ g  ++++++
      EHT97872.1  7 LSNRSQAVRLPKAVALPDdvkhveIVAVGRTRIISPAG-ESWDAWF 51
                    689***************9999977777********99.8999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 604.16
//
Query:       EHT97873.1  [L=96]
Description: hypothetical protein CKS_5426 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   10.8   0.0       0.21   10.7   0.0    1.1  1  NadA      Quinolinate synthetase A protein


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.2e-05      0.21      36      59 ..       7      28 ..       2      52 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.2e-05
                HHHHHCCC-SSSEEEEES-HHHHH CS
        NadA 36 eLarkaaeteaevivfcGVhFMae 59
                +L++k++  ++++++fcGV FMa 
  EHT97873.1  7 KLSEKVR--QENLLMFCGVAFMAA 28
                5555544..5789*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 683.28
//
Query:       EHT97874.1  [L=162]
Description: TrbB family plasmid conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-13   49.0   0.0    7.7e-13   48.8   0.0    1.2  1  TraF           F plasmid transfer operon protein
  ------ inclusion threshold ------
      0.023   15.1   0.0      0.042   14.2   0.0    1.4  1  DUF836         Glutaredoxin-like domain (DUF836)
      0.082   13.4   0.1       0.15   12.5   0.1    1.6  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   1.3e-16   7.7e-13     129     223 ..      55     154 ..      26     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 1.3e-16
        TraF 129 keygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpn..arvdkgqaarlgv...krtPalvlvdpksqkvvpvaaGllsldeleer 222
                 ++y +++F++g+c yc+++ p l ++  ++g++v + ++dgr + ++p+    +     + +g      tP+++lv+ ++ +  p+a+G++  + l++r
  EHT97874.1  55 DDYRIVLFMQGGCHYCQQFDPQLAQLSSRTGFKVFPYTLDGRGDVSFPDaiPAPRAVLDQFFGPgnnGVTPTTFLVNVNTLQSWPLAQGIVDVNSLLQR 153
                 67889*******************************************964445566666788888899***********9999*************** PP

        TraF 223 i 223
                 i
  EHT97874.1 154 I 154
                 9 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.1e-06     0.042       1      31 [.      58      88 ..      58      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEE CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleeglel 31
                +++L+   gCh C+q   +L++l+ + g+++
  EHT97874.1 58 RIVLFMQGGCHYCQQFDPQLAQLSSRTGFKV 88
                599********************99998776 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.5e-05      0.15       7      31 ..      57      84 ..      54     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
  Thioredoxin_2  7 pvlvvftdpdCpyCkklkkelkel...d 31
                   + +v+f + +C yC+++  +l +l    
     EHT97874.1 57 YRIVLFMQGGCHYCQQFDPQLAQLssrT 84
                   5689*****************9994333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1186.03
//
Query:       EHT97875.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97875.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97875.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97875.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97875.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97875.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97875.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97875.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97875.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97875.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97875.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97875.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97875.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97875.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97875.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97875.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97875.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97875.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2386.79
//
Query:       EHT97876.1  [L=125]
Description: hypothetical protein CKS_5421 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 959.07
//
Query:       EHT97877.1  [L=371]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-22   80.1   0.0    2.2e-22   79.4   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    2.1e-10   40.1   1.5      4e-09   36.0   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.9e-09   36.7   1.1    3.2e-08   34.1   0.3    2.5  2  HTH_32        Homeodomain-like domain
    2.9e-07   30.4   1.3    1.2e-06   28.4   0.3    2.4  3  HTH_29        Winged helix-turn helix
      2e-06   27.3   4.2      5e-06   26.1   0.3    2.9  3  HTH_33        Winged helix-turn helix
    1.4e-05   25.1   0.6    0.00023   21.2   0.2    2.7  3  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.048   14.2   1.0       0.07   13.7   0.2    1.7  2  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.057   13.2   0.6       0.17   11.7   0.1    2.1  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   9.9e-26   2.2e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 9.9e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97877.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97877.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   1.8e-12     4e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.6   0.0      0.12   2.6e+02      30      38 ..     128     136 ..     126     139 .. 0.88
   3 ?   -2.0   0.1       1.6   3.5e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.8e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97877.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97877.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97877.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.69   1.6e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.1   0.3   1.4e-11   3.2e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.69
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT97877.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.4e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97877.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.3   5.4e-10   1.2e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.5   0.0       1.2   2.7e+03      26      33 ..     129     136 ..     127     137 .. 0.82
   3 ?   -2.2   0.0       1.9   4.3e+03      35      44 ..     358     367 ..     357     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.4e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97877.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT97877.1 129 ASTIRRWL 136
                 58*****7 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
      HTH_29  35 rfeegGlaal 44 
                  f++gGl++l
  EHT97877.1 358 SFHTGGLRGL 367
                 799****998 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.3   2.2e-09     5e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?    1.3   0.1      0.12   2.8e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -3.2   0.0       3.2   7.1e+03      25      33 ..     314     322 ..     308     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.2e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97877.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97877.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.2
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97877.1 314 SSMWQLLKK 322
                 689***995 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2     1e-07   0.00023       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.8   0.0      0.24   5.5e+02      25      33 ..     128     136 ..     124     139 .. 0.85
   3 ?   -3.3   0.0       4.7     1e+04      36      46 ..     359     369 ..     358     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1e-07
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97877.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.24
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97877.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.7
      HTH_28  36 yeegGiagLvp 46 
                 + +gG+ gL+p
  EHT97877.1 359 FHTGGLRGLNP 369
                 6899****987 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   3.1e-05      0.07      12      68 ..      27      84 ..      18      96 .. 0.81
   2 ?   -3.8   0.0         8   1.8e+04      48      57 ..     358     367 ..     357     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.1e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97877.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  6666666667777889**********************99999999764256777766 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8
  LZ_Tnp_IS481  48 rfraeGldGl 57 
                    f + Gl+Gl
    EHT97877.1 358 SFHTGGLRGL 367
                   69999****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.7e-05      0.17      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.1   0.0       1.5   3.5e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT97877.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97877.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2709.99
//
Query:       EHT97878.1  [L=102]
Description: hypothetical protein CKS_5419 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.6   4.9       0.28   11.3   4.9    1.2  1  MASE2     MASE2 domain


Domain annotation for each model (and alignments):
>> MASE2  MASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.9   1.6e-05      0.28      11      88 ..      10      86 ..       6      87 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.6e-05
       MASE2 11 llgaliiaaglleqhfslalllllvlnallwPhlayllarrsrdplrteqrlLliDallgGlwialmgfsllpsvvll 88
                +++++ +a +        + ++  ++ al +    + ++ ++++  + + ++L++ a+ +G+w+a+ gf +   v+++
  EHT97878.1 10 AVVFFLLALACGLAGWGAWKYWNAMFSALGYGTADF-VTLNAENQAMKTPLNLTMYAMPVGFWCAAAGFLAASGVAFI 86
                566666777777777777888888888888876555.55666777777889******************998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 757.29
//
Query:       EHT97879.1  [L=455]
Description: TraH family plasmid conjugative transfer pilus assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.9e-104  348.5   5.5   4.9e-104  348.5   5.5    1.3  2  TraH            Conjugative relaxosome accessory transposon p
  ------ inclusion threshold ------
      0.011   15.8   5.0        1.3    9.1   0.8    3.4  3  ApoLp-III       Apolipophorin-III precursor (apoLp-III)
      0.016   15.3   0.1          4    7.5   0.0    2.6  2  PHD_like        Antitoxin of toxin-antitoxin, RelE / RelB, TA
        0.2   11.7   5.8        0.5   10.5   2.1    2.9  2  Med9            RNA polymerase II transcription mediator comp
       0.23   11.5   2.7        1.8    8.6   0.9    3.1  3  FerA            FerA (NUC095) domain
       0.37   11.2   6.7       0.29   11.5   3.1    2.5  3  HrpB7           Bacterial type III secretion protein (HrpB7)
       0.49   10.5   9.9       0.17   12.0   6.3    2.0  2  Mod_r           Modifier of rudimentary (Mod(r)) protein
       0.51   10.4   4.2       0.59   10.2   1.1    2.5  2  COG2            COG (conserved oligomeric Golgi) complex comp
       0.55   10.3   8.7       0.44   10.6   5.8    2.2  2  DHR10           Designed helical repeat protein 10 domain
       0.72   10.9   3.2        2.9    8.9   0.4    2.9  3  Rotamase        PPIC-type PPIASE domain
       0.94    9.3   5.7       0.81    9.5   2.9    2.1  2  SKA1            Spindle and kinetochore-associated protein 1
        1.2    9.6   8.2        8.3    6.9   0.8    3.2  3  H-kinase_dim    Signal transducing histidine kinase, homodime
        1.4    8.1   8.3       0.85    8.9   4.5    2.4  3  DUF4763         Domain of unknown function (DUF4763)
        1.7    8.7   4.7         28    4.7   2.4    2.7  2  Noelin-1        Neurogenesis glycoprotein
        1.9    8.4   5.6        1.4    8.8   1.9    2.3  2  Helicase_IV_N   DNA helicase IV / RNA helicase N terminal
        2.2    9.0  10.8        2.3    8.9   5.7    2.8  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
        4.3    7.3   9.8       0.67    9.9   3.1    2.9  3  Prefoldin       Prefoldin subunit
        6.1    7.4   9.1        2.9    8.4   1.0    3.4  3  NPV_P10         Nucleopolyhedrovirus P10 protein
        6.7    7.5   9.3        4.5    8.0   3.1    3.1  3  FliD_N          Flagellar hook-associated protein 2 N-terminu


Domain annotation for each model (and alignments):
>> TraH  Conjugative relaxosome accessory transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.5   5.5  5.2e-107  4.9e-104       1     360 [.      26     372 ..      26     373 .. 0.95
   2 ?   -3.8   0.2       6.4     6e+03     105     115 ..     404     414 ..     391     437 .. 0.49

  Alignments for each domain:
  == domain 1  score: 348.5 bits;  conditional E-value: 5.2e-107
        TraH   1 lddffdel.tqsnvtsPsafegqrrGyltgGsvsaRnrvknvnlvsvtpPslkaGCGGIDlfaGgfSfinaeqlvallrniasnapgyaFqlALqtlsp 98 
                 l+++f++l +  n t++ a++gq++Gy+tgG++++Rn+vk+++++s+tpPsl+aGCGGID ++G+fSfin++ql+++++n ++na+gy+F+lALqt++p
  EHT97879.1  26 LNNYFNKLgFEGNATGAAAWQGQAAGYVTGGNLFLRNQVKQIQVMSFTPPSLTAGCGGIDAYLGAFSFINSDQLQQFVKNLMANAQGYFFDLALQTVAP 124
                 6899*********************************************************************************************** PP

        TraH  99 qlgkvikklqakaqalnqlqinsCeaAqglvkglapekktkakqsiceeagsksglfsdvaearsecstegqadsvlakassdpalkdqgevveegnlv 197
                 +l+++ + lq++a++ln+++i+sC+aAqg+++gl+p k++ ++q++c++++ +s+lf+d+a++r++c+ +gq+++v++ka  ++ +kdq  v +++nl+
  EHT97879.1 125 ELKDAKDYLQKLATDLNSTNISSCQAAQGIIGGLWP-KTQVSQQKVCQDIAGESNLFADWAASRQGCTVGGQMSNVMDKA--SAGEKDQ--VLRNKNLM 218
                 ************************************.99******************************99*********..5777888..999***** PP

        TraH 198 wkalkkkgltsgdkelaellmslvGtviikenaadgkgkkdvrvlpslaknsalledLldGgskkvyrCdseedtqkClept...stidttkglksrvr 293
                 w++l+++ ++  d+el+el+m+l+Gt++++     g+g     ++p+++  +al+ +L++Ggs ++ +C s   t +Cl++t   ++i+++++l ++v+
  EHT97879.1 219 WEILNNNAMFGSDTELKELVMNLTGTMMYD-----GNGIP-KALVPQAD-HPALIRALMHGGSLDIQTCVS---TGDCLKMTtghVQISASNALVEKVK 307
                 **********99*****************3.....22222.23566664.59***********999***76...688********************** PP

        TraH 294 ellesivekiandtaltaeekaflestplpvykllkalaaletgaadsvleelaeliAaelayqlle 360
                 ++++si +k+++d+al+a+ek+f++st++pv+++l    +l  +++  +l++l+++iA++++ q+l+
  EHT97879.1 308 NMINSIRDKLRTDEALSATEKGFIQSTSVPVLRYLIDPMQL--NLNVNMLSHLSDYIAYDILLQYLK 372
                 *****************************************..9*********************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.4
        TraH 105 kklqakaqaln 115
                 ++l+a++q+++
  EHT97879.1 404 RQLEALQQQVQ 414
                 22222222222 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.045        43      34      79 ..      99     145 ..      93     204 .. 0.69
   2 ?    2.5   0.0      0.16   1.5e+02      31      51 ..     299     319 ..     292     330 .. 0.78
   3 ?    9.1   0.8    0.0014       1.3      71     100 ..     392     421 ..     369     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.045
   ApoLp-III  34 lvdqlkqvikslqeelkk.ksdeleealkevkkkieetadklseenP 79 
                 l + +k++++++q    + + +++++ lk++k+ +++ a +l++ n 
  EHT97879.1  99 LQQFVKNLMANAQGYFFDlALQTVAPELKDAKDYLQKLATDLNSTNI 145
                 33444444444444444445566777777777777777777777554 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
   ApoLp-III  31 senlvdqlkqvikslqeelkk 51 
                 s+ lv+++k++i+s++++l +
  EHT97879.1 299 SNALVEKVKNMINSIRDKLRT 319
                 677888888888888888765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0014
   ApoLp-III  71 adklseenPevkkkaqelqekvQsgvqslv 100
                 +d+l+++ +e+ +++++lq++vQ++  +l 
  EHT97879.1 392 MDTLRKNVSEASRQLEALQQQVQTKADALT 421
                 699********************9988774 PP

>> PHD_like  Antitoxin of toxin-antitoxin, RelE / RelB, TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0042         4      88     129 ..      97     138 ..      92     150 .. 0.84
   2 ?    5.0   0.0     0.025        24       4      57 ..     396     444 ..     392     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHHHTHHHHHTSTTTGGGHHHHHHHHH CS
    PHD_like  88 eaaedLvedlldYaqdYlnrldlflnspnRraHypYllrvll 129
                 + ++++v +l+  aq Y+ +l l + +p+ +    Yl + + 
  EHT97879.1  97 DQLQQFVKNLMANAQGYFFDLALQTVAPELKDAKDYLQKLAT 138
                 5689*******************9999999888888887765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.025
                 EEEHHHHHHTHHHHHHHHHHT.--EEEEETT..EEEEEEEHHHHHHHT...TT- CS
    PHD_like   4 elsitearkefsalidqvvkeykpvlvkrnrkkekvsiistdllkelldrgykl 57 
                 +++++ea ++++al +qv  +  ++l++  r   ++s ++++   +lldr y+ 
  EHT97879.1 396 RKNVSEASRQLEALQQQVQTK-ADALTELDR---QMSYLRQQTSSQLLDR-YQQ 444
                 689***************999.778888877...8999999999999954.444 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.43     4e+02      21      36 ..     303     318 ..     286     334 .. 0.80
   2 ?   10.5   2.1   0.00053       0.5      47      79 ..     389     426 ..     368     427 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.43
        Med9  21 skdletktgelrhkLk 36 
                 ++++++ ++++r+kL 
  EHT97879.1 303 VEKVKNMINSIRDKLR 318
                 5678888999999986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
        Med9  47 g.....idrsveeqeaeieeleeqlakKrelLkkyknr 79 
                 +     + ++v e  +++e+l++q+++K + L+++ ++
  EHT97879.1 389 EpqmdtLRKNVSEASRQLEALQQQVQTKADALTELDRQ 426
                 255555999***********************999765 PP

>> FerA  FerA (NUC095) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.3   2.2e+03       7      25 ..     230     248 ..     229     250 .. 0.83
   2 ?    0.3   0.2      0.74     7e+02      14      35 ..     366     388 ..     357     415 .. 0.72
   3 ?    8.6   0.9    0.0019       1.8      35      57 ..     416     438 ..     392     444 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
        FerA   7 seeelaslvlklLdqlieD 25 
                 s++el++lv++l   ++ D
  EHT97879.1 230 SDTELKELVMNLTGTMMYD 248
                 799*******998877755 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.74
        FerA  14 lvlklLdqlieDcskpLpele.g 35 
                 ++l++L +li+ +++++ + +  
  EHT97879.1 366 ILLQYLKELIDQARMQMASRNyP 388
                 57888999998888887665544 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0019
        FerA  35 gkpnvteLDrqlkklRkaaleqI 57 
                 +   +teLDrq+  lR++  +q+
  EHT97879.1 416 KADALTELDRQMSYLRQQTSSQL 438
                 33568************988776 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.6   2.4e+03     115     138 ..     295     318 ..     260     328 .. 0.64
   2 ?   -1.6   0.0       3.3   3.1e+03      71      96 ..     358     383 ..     357     389 .. 0.84
   3 ?   11.5   3.1    0.0003      0.29      81     121 ..     392     432 ..     386     447 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
       HrpB7 115 kiaRndaqidacrerierlrraae 138
                 +i+  +a ++++++ i+ +r++++
  EHT97879.1 295 QISASNALVEKVKNMINSIRDKLR 318
                 344444555555555555555544 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
       HrpB7  71 iadylacrayrdvlegrvraaeaela 96 
                 + dy+a++++++ l++ + +a  ++a
  EHT97879.1 358 LSDYIAYDILLQYLKELIDQARMQMA 383
                 57999999999999999998887765 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.0003
       HrpB7  81 rdvlegrvraaeaelaaarqaldaaedavaatarkiaRnda 121
                 +d l+ +v +a+++l+a++q+++ ++da+ + +r+++ ++ 
  EHT97879.1 392 MDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQ 432
                 789999***********************999998876655 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       2.9   2.7e+03      26      36 ..     124     134 ..      94     151 .. 0.47
   2 ?   12.0   6.3   0.00018      0.17      20      92 ..     369     443 ..     351     447 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
       Mod_r  26 pevkqlkeeke 36 
                 pe+k+ k++++
  EHT97879.1 124 PELKDAKDYLQ 134
                 22333333322 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00018
       Mod_r  20 alvktl.pevkqlkeekeellaeneslaeknlsl.epeleelrselqekleelkelekefeekeqel.dellqkfs 92 
                 +++k+l ++  +++ +  +  + ++++++kn s+   +le l++++q k + l+el +++  + q+  ++ll++++
  EHT97879.1 369 QYLKELiDQ-ARMQMASRNYPEPQMDTLRKNVSEaSRQLEALQQQVQTKADALTELDRQMSYLRQQTsSQLLDRYQ 443
                 344444233.444444444445555666666666555666666666666666666666666666666455555555 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   1.3e+03      88     112 ..     302     326 ..     294     342 .. 0.76
   2 ?   10.2   1.1   0.00062      0.59      74     118 ..     388     432 ..     380     444 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
        COG2  88 vreklsereeeveskleeakeleek 112
                 ++ek++++++ +++kl+  ++l ++
  EHT97879.1 302 LVEKVKNMINSIRDKLRTDEALSAT 326
                 5678888888888888877776654 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00062
        COG2  74 vesplaaarkkvesvreklsereeeveskleeakeleekrellkl 118
                  e ++ ++rk+v+++ ++l++ +++v+ k ++ +el ++  +l+ 
  EHT97879.1 388 PEPQMDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQ 432
                 5778999*****************************999877765 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   1.8e+03      28      53 ..     119     144 ..     118     151 .. 0.62
   2 ?   10.6   5.8   0.00047      0.44      65     111 ..     391     437 ..     367     443 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
       DHR10  28 lqvvekdlrsciklleeieaelakle 53 
                 lq v  +l+ + + l++++++l++++
  EHT97879.1 119 LQTVAPELKDAKDYLQKLATDLNSTN 144
                 56666666666666666666666655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00047
       DHR10  65 aleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakar 111
                 ++++++++++e +r+ e lq+q++ + + l+ l +q++  r++  ++
  EHT97879.1 391 QMDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQQTSSQ 437
                 68899999999999999999999999999999999999999887665 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       5.4   5.1e+03      25      43 ..     122     140 ..     117     167 .. 0.60
   2 ?    0.4   0.1       1.4   1.3e+03      11      34 ..     299     322 ..     289     328 .. 0.80
   3 ?    8.9   0.4     0.003       2.9      10      48 ..     394     432 ..     382     445 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 5.4
                 HHCCTCCCHHHHHHHHCCC CS
    Rotamase  25 ileqlksgedtFeelArky 43 
                 ++ +lk  +d +++lA++ 
  EHT97879.1 122 VAPELKDAKDYLQKLATDL 140
                 4455555555555555542 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.4
                 ----HHHHHHHHHHHHCCTCCCHH CS
    Rotamase  11 sekeraeakakaeeileqlksged 34 
                 s++  +++k+ +++i+++l+++e+
  EHT97879.1 299 SNALVEKVKNMINSIRDKLRTDEA 322
                 5566688999*********99986 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.003
                 E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CH CS
    Rotamase  10 asekeraeakakaeeileqlksgedtFeelArkySddkn 48 
                 + +k+  ea +++e++++q+++++d++ el r+ S+ ++
  EHT97879.1 394 TLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQ 432
                 55678899**************************96444 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.99   9.4e+02      24      61 ..     295     332 ..     277     356 .. 0.70
   2 ?    9.5   2.9   0.00086      0.81       5      72 ..     371     437 ..     368     448 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.99
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  24 dlskieaevsaleellnklkkelqeeeeaikklkkeie 61 
                  +s+ +a v+ +++ +n++++ l++ e +  + k  i+
  EHT97879.1 295 QISASNALVEKVKNMINSIRDKLRTDEALSATEKGFIQ 332
                 45555566777777777777777777766666555554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00086
                 XXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXX CS
        SKA1   5 lrelv.slrainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqh 72 
                 l+el+ ++r    ++++ ++ +  ++++vs+  ++l++l++++q++++a+ +l  ++   ++ q++  +
  EHT97879.1 371 LKELIdQARMQMASRNYPEPQMDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQ-QTSS-Q 437
                 6666624555566788999***********************************77766663.3333.3 PP

>> H-kinase_dim  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.018        17      23      64 ..      94     142 ..      93     146 .. 0.93
   2 ?   -2.5   0.1       7.4   6.9e+03      25      51 ..     307     333 ..     305     335 .. 0.79
   3 ?    6.9   0.8    0.0088       8.3      15      66 ..     368     417 ..     364     420 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.018
  H-kinase_dim  23 itkarLnqsleefr.......fenglkasvtelksslqnlgrisgeLQe 64 
                   i+  +L+q+++++        f+  l++++ elk++ + l++++++L +
    EHT97879.1  94 INSDQLQQFVKNLManaqgyfFDLALQTVAPELKDAKDYLQKLATDLNS 142
                   778899*****9999********************************86 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.4
  H-kinase_dim  25 karLnqsleefrfenglkasvtelkss 51 
                   k+++n + +++r+++ l+a+ + + +s
    EHT97879.1 307 KNMINSIRDKLRTDEALSATEKGFIQS 333
                   788999999999888888888877776 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0088
  H-kinase_dim  15 lnlvGElVitkarLnqsleefrfenglkasvtelksslqnlgrisgeLQegv 66 
                   l    El i++ar++  +++   e +++++ +++ +++++l+ + +  Q ++
    EHT97879.1 368 LQYLKEL-IDQARMQMASRNYP-EPQMDTLRKNVSEASRQLEALQQQVQTKA 417
                   5555565.79999999999999.********************999999875 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.8   5.5e+03     217     234 ..     123     140 ..     117     150 .. 0.56
   2 ?   -0.7   0.0      0.75   7.1e+02      47      75 ..     292     320 ..     276     328 .. 0.83
   3 ?    8.9   4.5    0.0009      0.85      96     144 ..     386     434 ..     355     448 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.8
     DUF4763 217 skelkelkkflkklhdel 234
                 + elk +k +l+kl  +l
  EHT97879.1 123 APELKDAKDYLQKLATDL 140
                 445555555555555444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.75
     DUF4763  47 eeldLdeiydelekiKqrvlelrskLaln 75 
                 + ++++   + +ek+K+  + +r kL+++
  EHT97879.1 292 GHVQISASNALVEKVKNMINSIRDKLRTD 320
                 56788888889999999999999999876 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0009
     DUF4763  96 tseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrl 144
                 +  +p+  +L++n + +  ql+ lqq+ ++  ++l+el+++++ +++++
  EHT97879.1 386 NYPEPQMDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQQT 434
                 4468999**********************************99888775 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1        97      42      68 ..     300     325 ..     284     336 .. 0.80
   2 ?    4.7   2.4      0.03        28      30      85 ..     381     436 ..     375     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.1
    Noelin-1  42 rqllekvqnlsqsievldlRtsrdlqy 68 
                   l+ekv+n+ +si+  +lRt ++l  
  EHT97879.1 300 NALVEKVKNMINSIRD-KLRTDEALSA 325
                 5689999999999975.7888888764 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.03
    Noelin-1  30 dvCsrDarsrqlrqllekvqnlsqsievldlRtsrdlqyvrktetllktlesklkv 85 
                 ++ sr+  + q+  l ++v   s+++e l++  +   + +++ + +++ l+++ ++
  EHT97879.1 381 QMASRNYPEPQMDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQQTSS 436
                 5677777888999999***************9999999999999999999887655 PP

>> Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.66   6.2e+02      74     114 ..      96     137 ..      92     174 .. 0.66
   2 ?    8.8   1.9    0.0015       1.4      92     134 ..     402     444 ..     367     448 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.66
  Helicase_IV_N  74 weetqqfaqtllssyqq.Wskeqvqaladvlqkkeeeieefv 114
                     ++ qqf+++l+++ q  + + ++q  a +l++ ++ +++++
     EHT97879.1  96 SDQLQQFVKNLMANAQGyFFDLALQTVAPELKDAKDYLQKLA 137
                    578899999999988874233444444555555444444443 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0015
  Helicase_IV_N  92 skeqvqaladvlqkkeeeieefvqqqkylstsevanlvekisa 134
                    +++q++al++++q+k + ++e+ +q +yl++++ ++l ++ ++
     EHT97879.1 402 ASRQLEALQQQVQTKADALTELDRQMSYLRQQTSSQLLDRYQQ 444
                    57899****************************9999887776 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.45   4.3e+02      52      86 ..     117     151 ..      96     156 .. 0.78
   2 ?    8.9   5.7    0.0024       2.3      35      94 ..     370     432 ..     365     437 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.45
  HIP1_clath_bdg  52 eelekLkreleakraelarlkssLesseqsgeqls 86 
                       l+++  el++ ++ l++l + L+s++ s+ q +
      EHT97879.1 117 LALQTVAPELKDAKDYLQKLATDLNSTNISSCQAA 151
                     56788899999999999999999999998887765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0024
  HIP1_clath_bdg  35 elerlkeeaerkleeqke...elekLkreleakraelarlkssLesseqsgeqlssqlaaLqa 94 
                      l++l ++a+++++ ++    ++++L++++ + + +l+ l++ +++++ + ++l  q++ L++
      EHT97879.1 370 YLKELIDQARMQMASRNYpepQMDTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLRQ 432
                     5777888888888866533339************************************99976 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.5   1.4e+03      15      34 ..     119     138 ..     117     146 .. 0.61
   2 ?   -1.7   0.1       2.8   2.6e+03      89     109 ..     299     319 ..     294     326 .. 0.64
   3 ?    9.9   3.1   0.00071      0.67      80     118 ..     393     431 ..     391     433 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHTT CS
   Prefoldin  15 lkeaieelektletlktlkk 34 
                 l++  +el+++++ l++l +
  EHT97879.1 119 LQTVAPELKDAKDYLQKLAT 138
                 55556666666666666655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  89 lekqlekleeeleklkdqitt 109
                  ++ +ek++++++ ++d++ t
  EHT97879.1 299 SNALVEKVKNMINSIRDKLRT 319
                 455566777777777776655 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00071
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  80 ellkkkleelekqlekleeeleklkdqittleanlaqly 118
                 ++l k+++e+++qle l+++++ ++d++t+l ++++ l 
  EHT97879.1 393 DTLRKNVSEASRQLEALQQQVQTKADALTELDRQMSYLR 431
                 6899*****************************998665 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       1.2   1.1e+03      22      59 ..      98     134 ..      96     149 .. 0.50
   2 ?    1.4   0.1      0.47   4.5e+02      43      68 ..     295     320 ..     285     327 .. 0.78
   3 ?    8.4   1.0    0.0031       2.9       9      41 ..     395     427 ..     390     440 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59 
                  lqq v+++ +n +        L+  + +L++ ++ ++
  EHT97879.1  98 QLQQFVKNLMANAQG-YFFDLALQTVAPELKDAKDYLQ 134
                 678888888888775.2233333333333333333333 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.47
     NPV_P10  43 kLdaqsaqLaeletkvenIqdiLnpd 68 
                 ++ a +a ++++++ +++I d L +d
  EHT97879.1 295 QISASNALVEKVKNMINSIRDKLRTD 320
                 56777888888999999998887655 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0031
     NPV_P10   9 IradikavddkVdalqqqvddvqenlpdvteln 41 
                  r+++++ + +++alqqqv+  ++ l +++   
  EHT97879.1 395 LRKNVSEASRQLEALQQQVQTKADALTELDRQM 427
                 588899999999999999876666555533333 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       2.1   1.9e+03      23      46 ..     119     142 ..      98     169 .. 0.57
   2 ?    0.9   0.0       0.8   7.5e+02      33      60 ..     295     323 ..     285     353 .. 0.59
   3 ?    8.0   3.1    0.0048       4.5      18      54 ..     401     438 ..     391     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.1
                 XXXXXXXXXXXHHHHHHHHHHHHH CS
      FliD_N  23 leqkktklewkqsayrelnsklsn 46 
                 l++   +l+  ++ +++l ++l++
  EHT97879.1 119 LQTVAPELKDAKDYLQKLATDLNS 142
                 444444444444444444444443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.8
                 XHHHHHHHHHHHHHHHHHHH.HHXXGGGG CS
      FliD_N  33 kqsayrelnsklsnlksals.alsksstf 60 
                 ++sa ++l  k++n+++++  +l++ +++
  EHT97879.1 295 QISASNALVEKVKNMINSIRdKLRTDEAL 323
                 55555555555555555553234333333 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0048
                 XXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.HH CS
      FliD_N  18 akldkleqkktklewkqsayrelnsklsnlksals.al 54 
                     +le+ ++++++k +a++el  ++s l++++s +l
  EHT97879.1 401 EASRQLEALQQQVQTKADALTELDRQMSYLRQQTSsQL 438
                 445679999***********************986455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1511  (0.0842769); expected 358.6 (0.02)
Passed bias filter:                      894  (0.0498633); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 2956.11
//
Query:       EHT97880.1  [L=962]
Description: TraG family plasmid conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-98  328.5  22.0    7.2e-98  328.5  22.0    3.3  4  TraG_N    TraG-like protein, N-terminal region
  ------ inclusion threshold ------
      0.071   13.8   0.5      0.071   13.8   0.5    3.3  3  PMC2NT    PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> TraG_N  TraG-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.5  22.0    8e-102   7.2e-98       2     466 ..       4     458 ..       3     459 .. 0.93
   2 ?   -5.7   8.0       1.8   1.6e+04     247     320 ..     555     631 ..     485     659 .. 0.60
   3 ?   -4.0   3.4      0.54   4.9e+03     270     307 ..     727     769 ..     682     788 .. 0.49
   4 ?   -8.8   9.5         2   1.8e+04     240     303 ..     764     848 ..     720     903 .. 0.47

  Alignments for each domain:
  == domain 1  score: 328.5 bits;  conditional E-value: 8e-102
      TraG_N   2 iyttgggellynvlnavAaifgsgdfkslvatglllgilialiakvfeekgalslrriekwllvaflvyllllvPkvtvqieDkttvsgtvpvvdnVPl 100
                 +y++ gge+l n++n vA+++g+ +++s++++ +l+ +++ + ++++     ++   ++k ++ ++l+ ++l++Pk tvqi+D+t+ +  +  v+nVPl
  EHT97880.1   4 VYVLTGGEFLSNIFNGVATMLGTTEWSSMFRIAALVSVMVLFATYLK----GHDPLEFIKFIAFFILLTSILVIPKRTVQIIDRTDATSIHT-VANVPL 97 
                 8***********************************77777777777....5899****************************888877775.****** PP

      TraG_N 101 glavvaslssgvgyaltelietafalpdllsytktgmvfGrqllsevrsarisdpalrqelqdFirdCvlpdlalalgayslddllkspdlydslr... 196
                 gla++a++++g+g alte++et++++pd+++y+ktgm+fG++l+ +++++  ++ +l++ +  ++r+Cv++d+ l +++ys ++l++s+d+y+ ++   
  EHT97880.1  98 GLAAPAKFITGIGTALTEGFETVYHTPDSVTYSKTGMLFGANLVGSATDFMFRNGDLAELFTAYVRNCVVGDILL-NNKYSFQELMNSTDPYALIFqnp 195
                 **************************************************************************9.*********************** PP

      TraG_N 197 splrtv.......art...yptCkeaws.gLrarlanqvnpglkarlaaalkllgknanata.fkdalsaasqyltgvsssasaediirqallinalkd 283
                 splr+v       a+t   ++tC+e ++  L+++l++++ +g ++++++   ++g + n +a f + ++++++y++g +++as  +++r a+++n lk+
  EHT97880.1 196 SPLRGVmvpygntAATregFWTCQELANnVLKSQLNADTAEGGSTWNYYVARITGAKPNGSAlFGTLMADSYNYYYGGGATAS--QVMRAAVVMNGLKQ 292
                 *********9877333779********999***************************999999******************89..************** PP

      TraG_N 284 gsqtlanlvdrsaaaaglaaasaalataqaeaqqnsswaaagdlarqalpmmqaflemliyalfPlvlllslyplkglkilkgylfllvwlqlWwplaa 382
                 g++++ +     + aagl++    la++++ a++++s a+++++a  +lp m+++l++++++lfP+++ll+++ + +l++lkgy+ +l++lq+W+p++a
  EHT97880.1 293 GISSYSAQN---GDAAGLVN----LASQSSYAKMRLSQATSASIATTYLPLMNTVLLAMVIGLFPVIILLATVHSLTLQVLKGYIHTLIYLQAWGPMFA 384
                 *54344333...33466666....9999999******************************************************************** PP

      TraG_N 383 ilnsllldaaygkfeerathstlglagltlstldgidealsdllavaGylalslPllalallkwggaaavaqlasalsgadssa 466
                 iln+ +  ++ +k+ +    +     ++ ls+l+ i+++++d+ ++aG l ls+P+la++l+k g +++v+q+++ l+ a++s 
  EHT97880.1 385 ILNYAVSAYLTNKTGS----L-----SFSLSNLSVIQQTHADIGSIAGWLSLSIPFLAMGLVK-GLGSVVSQAGNYLGTAMNST 458
                 ************9443....3.....445555559999*************************.**************999985 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 1.8
      TraG_N 247 a..fkdalsa.asqyltgvsssasaediirqallinalkdg.sq...........tlanlvdrsaaaaglaaasaalataqaeaqqnss 320
                 +  ++++ s+ +sq+ +++s+             +++  +g ++           +l+++v r a ++++++a a+   +++e++qn s
  EHT97880.1 555 SnsLSHSASTgTSQLSQWASQR----------GSSDTVSRGaDNsisandaaaisKLQSAVARYARDNNVSQADAL--RTAMEQSQNMS 631
                 0223333333344444444444..........44444333321123333334444677777777777776666655..44444444444 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 0.54
      TraG_N 270 diirqallinalkdg.sq.....tlanlvdrsaaaaglaaasaa 307
                   +++++++ ++ d+ +q      ++n++   a++a+++++++a
  EHT97880.1 727 GSLLNQMAA-TFSDMrTQasqysDTQNRSHEYAQMASFVENNSA 769
                 333333333.2333332233344444444444444444444444 PP

  == domain 4  score: -8.8 bits;  conditional E-value: 2
      TraG_N 240 gknanata...........fkdalsaasqyltgvsss.a.saediirqallina.lkdgsq........tlanlvdrsaaaaglaa 303
                   n++a++            k+  ++a+++lt vss  a + +++++ +++ +  + +  +             ++++++a gl+ 
  EHT97880.1 764 VENNSAAIrsnatqefveyAKQNHPDAERVLTDVSSPeArAEREALAGRFVEERmMPQL-EaqfranqgRATEGMGDTVSASGLQG 848
                 22222222233333344444444444555555555543132223333333322213333.02344455533344444444444443 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5     8e-06     0.071       3      72 ..     519     589 ..     517     596 .. 0.79
   2 ?   -1.7   0.4      0.53   4.7e+03      18      73 ..     713     764 ..     707     771 .. 0.64
   3 ?    4.1   1.3    0.0083        75      18      89 ..     888     954 ..     877     960 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8e-06
      PMC2NT   3 atraanaLpaeDldfyrsldpefaksldeqserllslinsllklaaskseisas..sklededdveekfksv 72 
                 +t a ++Lp +D++  rs  ++f+++ +e +++l sl nsl ++a++ +++ ++  s++ ++d v++  ++ 
  EHT97880.1 519 TTGAISRLP-TDIQLDRSAVSGFQRQQREAESQLQSLSNSLSHSASTGTSQLSQwaSQRGSSDTVSRGADNS 589
                 677889999.***********************************999998766754444445455455545 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.53
      PMC2NT  18 yrsldpefaksldeqserllslinsllklaaskseisassklededdveekfksvv 73 
                 +r+   + +++ d+ s  ll+ + +  + + ++ ++ + +++++ +   ++++s+v
  EHT97880.1 713 HRTT--DNSSHTDNASGSLLNQMAATFSDMRTQASQYSDTQNRSHEY--AQMASFV 764
                 5555..44678889999999999888777777766644433333333..4555555 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0083
      PMC2NT  18 yrsldpefaksldeqserllslinsllklaaskseisassklededdveekfksvvdvvDsllEkadtcLDe 89 
                 +rs+  + ++++++q++++ +  ++l + ++ +++    ++ +++++v +  + v+d+ Ds   ka  +LDe
  EHT97880.1 888 QRSV-DSAQEKVNHQQSEVNKQYTNLEQEHQVQGRRF--DEANKAEHVRQEARPVIDITDS--NKAKEMLDE 954
                 7899.899999***************99999999984..47999999999**********8..466666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1808  (0.100842); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 6374.81
//
Query:       EHT97881.1  [L=729]
Description: TraD family conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-115  385.7   0.0   2.7e-115  385.4   0.0    1.1  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      7e-17   61.6   0.0    1.2e-16   60.8   0.0    1.4  1  TraG-D_C         TraM recognition site of TraD and TraG
    1.3e-11   45.1   2.7      2e-10   41.3   2.1    2.3  2  TraD_N           F sex factor protein N terminal
    3.5e-11   42.6   0.0    2.9e-10   39.6   0.0    2.0  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
    1.1e-05   25.9   0.0    0.00029   21.2   0.0    2.6  3  AAA_16           AAA ATPase domain
    0.00031   20.2   0.0    0.00052   19.4   0.0    1.3  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
    0.00058   19.7   0.0      0.001   18.9   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0039   17.4   0.0      0.037   14.2   0.0    2.3  2  AAA_33           AAA domain
     0.0056   16.0   0.0      0.011   15.0   0.0    1.4  1  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.016   14.2   0.0      0.027   13.5   0.0    1.2  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.03   14.6   0.0      0.069   13.4   0.0    1.6  1  AAA_22           AAA domain
      0.031   13.7   0.0      0.083   12.3   0.0    1.7  2  KTI12            Chromatin associated protein KTI12
      0.045   12.8   0.0      0.075   12.1   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.12   12.0   0.0       0.26   11.0   0.0    1.4  1  AAA_30           AAA domain
       0.17   11.4   0.0       0.35   10.4   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
        3.9    8.1   7.6        2.1    9.0   2.6    2.3  2  Pex14_N          Peroxisomal membrane anchor protein (Pex14p)


Domain annotation for each model (and alignments):
>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.4   0.0  2.4e-118  2.7e-115       2     385 ..     172     562 ..     171     563 .. 0.98

  Alignments for each domain:
  == domain 1  score: 385.4 bits;  conditional E-value: 2.4e-118
  TrwB_AAD_bind   2 lsiagvplpkeretqhilivGttGsGKtqalekllrairargdraivlDltGafvsrfydegkdillnPlDaRsaaWsvfaeikeksdfaeiAaal 97 
                    l+++++pl  ++e++ +l+ Gt GsGK++al+kll+++rargd +iv+D+++ +v+r ++e+ d llnP D+R+++W+++ e+++ sdf+ i + l
     EHT97881.1 172 LHFDQLPLLLDSEVKNLLLHGTPGSGKSNALNKLLQQLRARGDMVIVYDKGCSLVKRHFNENIDKLLNPRDKRCENWDLWLECQTTSDFDSIGNTL 267
                    67899******************************************************************************************* PP

  TrwB_AAD_bind  98 ipedggssdpfWaeaartvlaetlrelvrekkksnaallralltadleeLkellagteaaalvaeeaertaasiratlatnlevlelLa....ekg 189
                    ip+  +++dpfW  +art++ ++ ++++++ ++s +allr+ll  +l+ L e+++gtea++l++e+ e+ta sir +l +++++l++++    +++
     EHT97881.1 268 IPQ-STKEDPFWTGSARTIFTSVSKRFQKDPHRSYNALLRTLLAINLKALREYVQGTEASNLMEEKVEKTAISIRGVLTNYVKALRYMQgierTGK 362
                    ***.9************************************************************************************9986666 PP

  TrwB_AAD_bind 190 erFSireWleeede....sgwlfltskaeqrallrpllsawldlaikallslpesrerrlWfflDElpaLgrleelksllaegRkfGgavvlglqs 281
                     rF ireW+++ +e    +gwl++ts+a++++ l+pl+s+wl  a++ ll++ e+  rr+Wf+ DEl +L++l+el  +l e+RkfGg++vlg+q+
     EHT97881.1 363 PRFAIREWMKQVNEpgqrHGWLWITSNAREHESLKPLISMWLAQAANCLLEMGENPTRRVWFIYDELTSLHKLPELPGVLSEARKFGGCFVLGFQN 458
                    69*********999888888**************************************************************************** PP

  TrwB_AAD_bind 282 iaqlrevYGedaaqsilslvntklilrvsdaetAeelsellGeqeversteslsygannsrdgvslgrqrevrpvVlaselqnlpdlegylklpeg 377
                      ql  +YG++ a+++++l+nt++++r +d+  A+++ + lG++  +  +e++syga ++rdgvs+++q+  + +V  s++q+lpdl++y+ lp+ 
     EHT97881.1 459 KPQLDFTYGREFADAMMDLLNTRFFFRSPDEGVANYVMRQLGQRRAKVFNEQYSYGADTVRDGVSFSKQEDDQYLVNYSDVQSLPDLTCYVTLPGA 554
                    ************************************************************************************************ PP

  TrwB_AAD_bind 378 lpvarvkl 385
                    +pv+r+++
     EHT97881.1 555 YPVVRMNM 562
                    *****987 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   1.1e-19   1.2e-16       1     125 [.     421     543 ..     421     544 .. 0.91

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.1e-19
    TraG-D_C   1 pvlfllDEfanlgkipdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklflgvndeetaeelSkllGektvesestsssssgsggs 99 
                 +v f+ DE+ +l k+p+l+ +ls++r+ g ++vl +Q+  ql+ +Yg+e a+++++ +++++f+++ de +a ++ ++lG+++ ++ +++ s +  +  
  EHT97881.1 421 RVWFIYDELTSLHKLPELPGVLSEARKFGGCFVLGFQNKPQLDFTYGREFADAMMDLLNTRFFFRSPDEGVANYVMRQLGQRRAKVFNEQYSYGADT-- 517
                 689*********************************************************************************9988888877644.. PP

    TraG-D_C 100 sessssssqseekrpLltpdeirrlp 125
                  +   s s++e  + L++ +++++lp
  EHT97881.1 518 VRDGVSFSKQEDDQYLVNYSDVQSLP 543
                 233345778888899*****999998 PP

>> TraD_N  F sex factor protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   2.1   1.8e-13     2e-10       1      92 [.      30     126 ..      30     128 .. 0.92
   2 ?    1.7   0.0      0.41   4.5e+02      43      79 ..     272     309 ..     263     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.8e-13
      TraD_N   1 ywvvllflvLtglllwlrlsqevflnglyYwaieeyvslknligs.aafydi....ktikitlasllakkwihlaaeqlleklqlsalvagvialvi 92 
                 +w++ lf vLt l +w+r++++ ++ng  Yw+  ++++  + + + +++yd+    +t++ t+a +l ++++  a++  l++l +++ +a  ++l++
  EHT97881.1  30 FWLLNLFFVLTPLFFWMRVPWQDMRNGGLYWWLYLSAGGEKALFNvPPVYDVpydgQTLHFTSAAILKDPYMTYAGQLTLQELFIAVFLASCVVLAV 126
                 6999****************************99988766555555******************************************999999997 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.41
      TraD_N  43 igsaafydi.ktikitlasllakkwihlaaeqlleklq 79 
                 +++ +f++   ++  t+ s +++k  h  +++ll+ l 
  EHT97881.1 272 TKEDPFWTGsARTIFTSVSKRFQKDPHRSYNALLRTLL 309
                 56689****999999*******************9875 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.6e-13   2.9e-10     181     454 ..     293     572 ..     249     583 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.6e-13
  T4SS-DNA_transf 181 mlsepnledenkeeaklleelkgkeedrvgdnlrvlv.ektdetrsSvlgtakselalyadplvrnatSksdFdlrdlr.......rkkvsvyv 266
                      ++ +p ++ +  ++  l+ +lk   e   g++++ l+ ek ++t  S+ g+++ +++ +++ +  + t k  F +r+ +       +++  +++
       EHT97881.1 293 FQKDPHRSYNALLRTLLAINLKALREYVQGTEASNLMeEKVEKTAISIRGVLTNYVKALRYMQGIERTGKPRFAIREWMkqvnepgQRHGWLWI 386
                      3444433333333333333344444444444444444045566778999999999999999999999********9988666676677889*** PP

  T4SS-DNA_transf 267 ivnpkdlevvapllrlffnmvvellkrklpnkderpkevlflLDEfpslGkleileealatiagYgirltlIiQsisqlketYgkegaksilsn 360
                        n+ + e ++pl+ +   +  + l +  +n  +r   v f+ DE +sl kl+ l   l   +++g  ++l +Q++ ql  tYg+e a+++++ 
       EHT97881.1 387 TSNAREHESLKPLISMWLAQAANCLLEMGENPTRR---VWFIYDELTSLHKLPELPGVLSEARKFGGCFVLGFQNKPQLDFTYGREFADAMMDL 477
                      *******************9999998888777777...******************************************************** PP

  T4SS-DNA_transf 361 savvivfaasndeetaeyiSkllGktTve..kestskstdakgksrsrsisekqRaLltPdevlrmdddeeivlikgqkPikakkalYykdedf 452
                         +  f  ++ e  a+y+ ++lG+  ++  +e+ s+  d+     s s++e    L++  +v  ++d    v + g  P+    + Y k +++
       EHT97881.1 478 LNTRFFFRSPD-EGVANYVMRQLGQRRAKvfNEQYSYGADTVRDGVSFSKQEDDQYLVNYSDVQSLPDLTCYVTLPGAYPVVRMNMTYEKLPFI 570
                      *9**9999998.************9876622689999888888889999******************999999999988888777777666666 PP

  T4SS-DNA_transf 453 ka 454
                       a
       EHT97881.1 571 AA 572
                      55 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.6e-07   0.00029      21      88 ..     182     240 ..     157     317 .. 0.64
   2 ?    1.5   0.0       0.3   3.3e+02      35      78 ..     360     409 ..     354     448 .. 0.75
   3 ?   -3.2   0.0       8.6   9.6e+03      80     104 ..     578     604 ..     547     648 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.6e-07
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqalareellrqllde 88 
                 +++  ++ll+G +G+GKs  +++ll++l+++g ++ ++ k  +l        + + + + e + +ll++
  EHT97881.1 182 DSEVKNLLLHGTPGSGKSNALNKLLQQLRARGdMVIVYDKGCSL--------VKRHF-N-ENIDKLLNP 240
                 455589*************************6566666665555........22223.3.333333333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.3
      AAA_16  35 vGKsslv.rellralekd....ggiflrgkcdqlesaipy.salaqalar 78 
                 +GK + + re+++++++     g+++++ +++++es  p+ s+++ ++a+
  EHT97881.1 360 TGKPRFAiREWMKQVNEPgqrhGWLWITSNAREHESLKPLiSMWLAQAAN 409
                 67766666999999998888877999********9999996556555523 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8.6
      AAA_16  80 ellrqllde..aesaeleawrekleea 104
                 el   l+ e  +e + +e + + +++ 
  EHT97881.1 578 ELNDSLDPEieEEITRRELDEDSIDRL 604
                 333333333222222222222222222 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.7e-07   0.00052      39      63 ..     180     209 ..     152     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.7e-07
                   -......SEEEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE  39 a.....shllvaGatgsGKStalntLilSl 63 
                          +ll++G++gsGKS+aln L++ l
    EHT97881.1 180 LldsevKNLLLHGTPGSGKSNALNKLLQQL 209
                   34445569******************9876 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   9.1e-07     0.001       2      61 ..     189     245 ..     188     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.1e-07
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegkpklpnlsvrtvdsflmalvkst 61 
                      + hG pG+GKS ++ kll++   l++    ++++ +g + ++++ ++++d++l+++ k++
       EHT97881.1 189 LLHGTPGSGKSNALNKLLQQ---LRARGDMVIVYDKGCSLVKRHFNENIDKLLNPRDKRC 245
                      68****************99...666666699999999************9999887764 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.3e-05     0.037       3      41 ..     189     233 ..     188     339 .. 0.73
   2 ?    0.4   0.0       0.6   6.7e+02      33      78 ..     370     415 ..     341     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdt...lrrrlfgtd 41 
                 ll+G pGsGKs  + +ll++l      ++  d+   l +r+f++ 
  EHT97881.1 189 LLHGTPGSGKSNALNKLLQQLRargDMVIVYDKgcsLVKRHFNEN 233
                 79****************999988745555555556666777633 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.6
      AAA_33  33 lrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat 78 
                 +++++ + +q++ + +++ + r ++ l+ l+   l++++n++l ++
  EHT97881.1 370 WMKQVNEPGQRHGWLWITSNAREHESLKPLISMWLAQAANCLLEMG 415
                 6677777888888888888899999999999999999999999665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.6e-06     0.011      19      50 ..     188     219 ..     182     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.6e-06
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrld 50 
                 +ll G pG+GKs+++++l ++l+++g++v ++
  EHT97881.1 188 LLLHGTPGSGKSNALNKLLQQLRARGDMVIVY 219
                 6899***********************99886 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.027      33      62 ..     189     218 ..     180     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                 EEEE-TTSSHHHHHHHHHHHHHCTT--EEE CS
        MeaB  33 GltGvPGaGkstlvealglelrrrGkrvav 62 
                  l G+PG+Gks ++++l ++lr+rG  v v
  EHT97881.1 189 LLHGTPGSGKSNALNKLLQQLRARGDMVIV 218
                 578**********************99876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.2e-05     0.069       7      32 ..     187     212 ..     182     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.2e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldee 32 
                  l+++G +G+GK+  l++ll+ql ++
  EHT97881.1 187 NLLLHGTPGSGKSNALNKLLQQLRAR 212
                 689*******************9654 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.4e-05     0.083       5      44 ..     189     228 ..     187     244 .. 0.87
   2 ?   -3.3   0.0       4.4     5e+03      67      87 ..     332     353 ..     323     354 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.4e-05
                 EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TT CS
       KTI12   5 vltGlPssGKstrakeLakaleeekrsvvviddeslgiek 44 
                 +l G P sGKs + ++L ++l++++  v+v d+    +++
  EHT97881.1 189 LLHGTPGSGKSNALNKLLQQLRARGDMVIVYDKGCSLVKR 228
                 789***********************99999987766554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.4
                 HHTT.SEEEE-S.---SHHHHH CS
       KTI12  67 dLskekvVIvDs.lnyikgfRY 87 
                 +++k+ + I    +ny+k  RY
  EHT97881.1 332 KVEKTAISIRGVlTNYVKALRY 353
                 555555555543269*****99 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.7e-05     0.075     128     163 ..     184     218 ..     104     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
       T2SSE 128 erglilvsGgTgsGKttllyallkeinksderivtv 163
                 e +++l+ G+ gsGK+  l+ ll+++ ++   +v+v
  EHT97881.1 184 EVKNLLLHGTPGSGKSNALNKLLQQLRAR-GDMVIV 218
                 4789***********************99.556655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00023      0.26      16      51 ..     183     218 ..     175     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
      AAA_30  16 sgdrvavltGpAGtGKttalkalreaweaaggrvig 51 
                 s+ +  +l+G +G+GK+ al++l + ++a+g  vi+
  EHT97881.1 183 SEVKNLLLHGTPGSGKSNALNKLLQQLRARGDMVIV 218
                 55566789*********************9988886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.35      32      89 ..     184     241 ..     174     245 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekr 89 
                 + k++ll G+ G+GK+  +++ll++l  +  ++++     +   +++ + i++ l+ r
  EHT97881.1 184 EVKNLLLHGTPGSGKSNALNKLLQQLRARGDMVIVYDKGCSLVKRHFNENIDKLLNPR 241
                 56899*********************98777777666666666666666666666655 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.48   5.4e+02     106     151 ..      99     136 ..      76     137 .. 0.69
   2 ?    9.0   2.6    0.0018       2.1      34     103 ..     596     663 ..     593     700 .. 0.51

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.48
     Pex14_N 106 PivtypefltkppkppppPlrtwrdllitatalaglgaglyglskr 151
                 P+ ty  +lt ++         +  ++ +  ++ ++++g+y+l +r
  EHT97881.1  99 PYMTYAGQLTLQEL--------FIAVFLASCVVLAVAYGVYYLLRR 136
                 55555444443333........45567778899999*****99987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
     Pex14_N  34 LtqeEIeeaLkraereeeasesavaassas.eqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqy 103
                 L+++ I+++L+ +++e++ + + +a+ ++  +  ++++++ +++p p+aa++ts++ + +s+ ++ ++ q 
  EHT97881.1 596 LDEDSIDRLLAVQSNEPAVQAT-TAPVATVpS-VTAATETINSSPLPPAAASTSAPDTRSSQVTA-SPAQN 663
                 8899********7777776653.233333321.12222222222333333223222222222222.22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 4912.65
//
Query:       EHT97882.1  [L=757]
Description: TraI family DNA-nicking and unwinding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-68  230.4   0.9    7.5e-68  229.2   0.0    2.0  2  TrwC          TrwC relaxase
    5.7e-25   87.2   0.5    5.7e-25   87.2   0.5    2.3  2  TraI_2B       DNA relaxase TraI 2B/2B-like domain
    5.9e-13   48.6   2.7    5.9e-13   48.6   2.7    2.7  3  ssDNA_TraI_N  single-stranded DNA binding TraI N-terminal sub
  ------ inclusion threshold ------
       0.97    9.7   5.9       0.91    9.8   2.3    2.6  2  DUF4129       Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> TrwC  TrwC relaxase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.0   1.7e-71   7.5e-68       1     294 [.       8     281 ..       8     282 .. 0.95
   2 ?   -2.6   1.6      0.66     3e+03      25      25 ..     580     580 ..     497     750 .. 0.57

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 1.7e-71
        TrwC   1 agdaaaYlekevaaadadYYsekgeppgrWlGkgaaalglsgevteeqfeallegrhpdtgerlgrakesaererkavagfDltfsaPKSvSllalvgd 99 
                 ag +a+Y++++ +    +YY   g+ +++W+Gk+a+ lgl+g+v++++f ++l+g  p +g  l+r  + +   + +++g+Dlt+saPKS+S+l +v +
  EHT97882.1   8 AGGGASYYMAK-D----NYYFL-GNMEASWMGKAAELLGLEGPVDAKTFDDALAGFFP-QGVDLSRMSGGQ---NVHRPGYDLTLSAPKSISVLGVVLG 96 
                 578899**964.3....89999.89*********************************.9******77754...59*********************** PP

        TrwC 100 derraaieaahdaAvkaalalleeeaaftRvgkeggqeqvktgglvaaafrHetsRagDPqlHtHvvvaNkvqaeedGkwralds.........eelyk 189
                 d+r   i +ah++Av  a++++e+ +a tRv  +g ++ + tg+l+aaaf+H+tsR++DPqlHtH++v+N +++   G+w++l+s         e++y+
  EHT97882.1  97 DSR---ILEAHQRAVGVAMGEIER-LASTRVMVDGVSQTEMTGKLLAAAFHHDTSRELDPQLHTHLIVMNLTEY--LGEWKTLSSdkignsgfiENVYA 189
                 ***...******************.9999***99***************************************7..6********************** PP

        TrwC 190 akkaagevynaeLaeeleklGyeveergkngvfeiagvpeelleafSkRrqqieaelaelvaefeekhgeapaaereaatletRaaKkeerslaelrae 288
                  ++a+g++y++eL++ +e++G+++  +gkn  +ei+gvp   +e fS+R+qqi+++++            a+ ++r++a+l+tR+aK+++ ++ el ++
  EHT97882.1 190 LQVALGKIYRNELRQAVEEMGFRTVVTGKNDLWEIEGVP---VEIFSQRTQQIREAVGD----------GASLKSRDVAALDTRKAKQKDPDRVELLTD 275
                 ************************8889***********...999*************9..........6778899*********************** PP

        TrwC 289 wreeaa 294
                 w ++++
  EHT97882.1 276 WMNRLE 281
                 **9987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.66
        TrwC  25 e 25 
                 +
  EHT97882.1 580 Q 580
                 1 PP

>> TraI_2B  DNA relaxase TraI 2B/2B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.5   1.3e-28   5.7e-25       2      72 .]     631     701 ..     630     701 .. 0.99
   2 ?   -3.0   0.1       1.8   8.2e+03      26      58 ..     719     748 ..     717     752 .. 0.61

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.3e-28
     TraI_2B   2 PVwldsknRklrdtYreGmVlEdrsekketreryvidrvhadtrmLslvdedGvlqrlklsaldsdwrlft 72 
                 P wldsknR+  dtYreGmVlE+r ++++  +ry++drv a+tr+L lv edG +q lkl ++ds+w+l++
  EHT97882.1 631 PQWLDSKNRRQLDTYREGMVLEQRAPDSRVSQRYTVDRVSAETRSLILVGEDGQRQGLKLGQVDSSWSLYR 701
                 88********************************************************************7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
     TraI_2B  26 sekketreryvidrvhadtrmLslvdedGvlqr 58 
                 ++k++  ++ +++ v +++    +v++dG +  
  EHT97882.1 719 QGKQRAGDSVTVTAVRKNS---LVVEQDGQKRV 748
                 5666666677776666554...35667776655 PP

>> ssDNA_TraI_N  single-stranded DNA binding TraI N-terminal subdomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         3   1.4e+04      33      46 ..     191     204 ..     191     205 .. 0.80
   2 ?   -0.0   0.1       0.2     9e+02      13      28 ..     419     434 ..     416     450 .. 0.70
   3 !   48.6   2.7   1.3e-16   5.9e-13       1      53 []     570     622 ..     570     622 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
  ssDNA_TraI_N  33 QavLagliRdeLke 46 
                   Q  L  + R+eL++
    EHT97882.1 191 QVALGKIYRNELRQ 204
                   55688899****97 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
  ssDNA_TraI_N  13 faasvkageeSVAQvs 28 
                   + + + a+++S A vs
    EHT97882.1 419 VMQQIEADRPSLAIVS 434
                   567899*******998 PP

  == domain 3  score: 48.6 bits;  conditional E-value: 1.3e-16
  ssDNA_TraI_N   1 DraqRYdrLAkefaasvkageeSVAQvsGpreQavLagliRdeLkeegvLGek 53 
                   D++qRY  LA+++aa v +ge+ V Q sG reQ+ L++++R+ L+e+g+LG k
    EHT97882.1 570 DKRQRYTALAQDYAAMVGQGENVVVQASGEREQQSLTAALRQTLQEKGMLGSK 622
                   9**************************************************75 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.32   1.4e+03      15      30 ..     306     323 ..     295     343 .. 0.74
   2 ?    9.8   2.3    0.0002      0.91       5      47 ..     541     583 ..     540     586 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.32
     DUF4129  15 drrpgeTprEyarrv..r 30 
                   rp  Tp ++ ++v  +
  EHT97882.1 306 AIRPETTPDDVRQAVslA 323
                 568999999999998432 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
     DUF4129   5 llraLaergldrrpgeTprEyarrvriapspaaalaalaelfe 47 
                 +l+ L+++g+ r ++eT r +a  v  ap+ +++  ala+ + 
  EHT97882.1 541 ALQTLEAAGVTRYRAETERTVAVSVVSAPDKRQRYTALAQDYA 583
                 5899*********************889***********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5182.34
//
Query:       EHT97883.1  [L=929]
Description: TraI family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-32  111.9   1.2    2.9e-32  111.9   1.2    3.0  4  AAA_30    AAA domain
    1.5e-28   99.4   1.6    4.7e-28   97.8   0.2    2.4  2  TraI      DNA helicase TraI
      3e-11   43.9   1.5      1e-10   42.1   0.1    2.3  2  AAA_19    AAA domain
    0.00024   20.9   0.5    0.00072   19.3   0.5    1.9  1  UvrD_C_2  UvrD-like helicase C-terminal domain
  ------ inclusion threshold ------
          6    7.0  14.8         18    5.5  14.8    1.8  1  DUF2058   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   1.2   8.2e-36   2.9e-32       2     179 ..     166     350 ..     165     355 .. 0.89
   2 ?   -1.6   0.1      0.51   1.8e+03      47     101 ..     440     500 ..     417     507 .. 0.65
   3 ?   -2.5   0.2         1   3.6e+03      42      78 ..     630     670 ..     621     687 .. 0.61
   4 ?   -3.4   2.0       1.8   6.5e+03     142     175 ..     884     903 ..     859     920 .. 0.51

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 8.2e-36
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelgieastiakllkrlk.....grarlepg.t 90 
                 l+++Q++a   +l+s+dr++ ++ +AG GKtt lk++ +a+e+       +v+glApt++a  ++a ++g++a+t+a++l  ++     g ++ + + t
  EHT97883.1 166 LTTGQQQASSLILESTDRFTGIQDYAGVGKTTQLKTVLAALETLPadqrPEVAGLAPTHRAVGEMA-DVGVKAQTLASFLMDMErriqgG-EKPDFSkT 262
                 7899*********************************9999998558889****************.99***********99999**973.3334444* PP

      AAA_30  91 llivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRqkeseeraaalalregdaeeale 179
                 l++vDE++mv+++++a+ + ++++ g + +l GD++Ql +V++G+++++l+e +  +ta ++e+vRq +++ + a + +   ++++al+
  EHT97883.1 263 LFLVDESSMVGNRDMADAMGHIAAGGGRAVLSGDRDQLLPVDNGAPFTLLQERSPLDTAIMQEIVRQ-SPALKPAIESVIARQVPAALD 350
                 **************************************************998899***********.567776666666555555655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.51
      AAA_30  47 grviglAptgkaAkvLaeelgieastiakllkrlk......grarlepgtllivDEagmvd 101
                  ++ +l   +++ ++L+  +g++a+  +  l + +      g+ + ++g + ++DE+g + 
  EHT97883.1 440 VTITVLDRVKTQTDRLKSVAGMAAQHGNIALINDRyytiraGQDSRQNGYVELIDETGQTQ 500
                 4555566666667777777777777666666555577888765666777899999998765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1
      AAA_30  42 weaa.g...grviglAptgkaAkvLaeelgieastiakllk 78 
                 ++++ g    +v   A  ++a +vL ++++ +a+t ++l++
  EHT97883.1 630 YTDNlGkwlTKVSQPAERQTAHDVLLADSDRQAATAQQLWE 670
                 44444444455555666666666666666666666666664 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.8
      AAA_30 142 eaagigtaeLtevvRqkeseeraaalalregdae 175
                 +++++++ae+++v+ q               +++
  EHT97883.1 884 QSRQQEQAEVSQVIQQ--------------ERQQ 903
                 2334444444444444..............3333 PP

>> TraI  DNA helicase TraI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       0.4   1.4e+03       4      70 ..       6      69 ..       4      79 .. 0.51
   2 !   97.8   0.2   1.3e-31   4.7e-28       1     121 [.     618     736 ..     618     738 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.4
        TraI  4 srvkdhvqvytddledwv.kalkeaeekatahdvlePkseravkqaealfamarelsktalGravlre 70
                +r  +h+q+yt   +d   + l  ++   ta    +P++      a al a  ++l  ta  +av + 
  EHT97883.1  6 ARSGEHIQLYTPLANDEAeRRLSRSPLYRTALAQANPQNGEL---AAALSAAQEALMSTA-EKAVRQA 69
                677788888886544433134555555566666666655443...444444444444443.3444444 PP

  == domain 2  score: 97.8 bits;  conditional E-value: 1.3e-31
        TraI   1 valsrvkdhvqvytddledwvkalkeaeekatahdvlePkseravkqaealfamarelsktalGravlreqGlkqgdstarviaPtkkyPqphlalPay 99 
                 v lsrvk hvqvytd+l +w+  + +  e+ tahdvl  +s+r+  +a++l+ +a +ls+ alGra+  +  l ++  +ar+i  ++kyP ph+alP++
  EHT97883.1 618 VGLSRVKAHVQVYTDNLGKWLTKVSQPAERQTAHDVLLADSDRQAATAQQLWEKATPLSDSALGRALATQ--LPEA-GEARFIHGSRKYPAPHVALPVH 713
                 679***************************************************************8766..4443.579******************* PP

        TraI 100 dknGksaGltlvPltad.dGalr 121
                 d  G    + l  ++ d dG+lr
  EHT97883.1 714 DASGVQRAVLLREVQLDgDGRLR 736
                 ****9999999988754378887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   2.9e-14     1e-10      16     144 ..     188     303 ..     171     305 .. 0.85
   2 ?   -0.2   0.2      0.33   1.2e+03      25      75 ..     389     445 ..     387     507 .. 0.57

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.9e-14
      AAA_19  16 taGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeeellivDEfqdv 114
                    +G GKT+ lk+++a l+ l   +  e++ +a+t+rA+ e+++      ++a+T+ ++ l+d+++++        +  e+ ++ +++l++vDE+++v
  EHT97883.1 188 QDYAGVGKTTQLKTVLAALETLPADQRPEVAGLAPTHRAVGEMADVG----VKAQTLASF-LMDMERRI--------QGGEKPDF-SKTLFLVDESSMV 272
                 5569*******************9999****************9765....9******99.78888877........23345566.7779********* PP

      AAA_19 115 d.elqyrLlkallgekkklllvGDpdQliyv 144
                     +   +  ++  + + +l GD+dQl +v
  EHT97883.1 273 GnRDMADAMGHIAAGGGRAVLSGDRDQLLPV 303
                 *999*********777889********9876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
      AAA_19  25 rvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrl 75 
                 rv+++iv  +  ++ ++ ++ l+v+ t+   + ++++++a +++        Ti  l
  EHT97883.1 389 RVIQAIVDDFTGRTAEARDNTLIVTQTNADKNAINTAIHAQLQArgelgrEVTITVL 445
                 678888888888887888999999999999999998885555546777773333333 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5     2e-07   0.00072       1      49 [.     580     627 ..     580     630 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2e-07
    UvrD_C_2   1 hayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRArekl 49 
                 ++ya t hkaQG  + +Viv + +   ++    + r +Y++++R ++++
  EHT97883.1 580 YGYAGTAHKAQGASALYVIVLAGVDGGRQAL-ASLRDAYVGLSRVKAHV 627
                 69******************99998887744.49**********99887 PP

>> DUF2058  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  14.8    0.0049        18      15      89 ..     835     908 ..     831     924 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0049
     DUF2058  15 kkakkakkekrkqkkqkkkgaadeakeaaeeakaekaerdrelneqrkeeaekkalkaqirqlieenrlkkkege 89 
                 ++++ka +e+ ++++++++ a +   +  +  + ++aer+   + qr++e+++++ +a++ q+i+++r++++  e
  EHT97883.1 835 QRMEKALAEEARRQQHQEA-APHLPGDPERPDALQQAERAESRALQREAEQSRQQEQAEVSQVIQQERQQARMRE 908
                 5555555554444444433.22224444455667889999999999**********************9876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1543  (0.0860617); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.43
# Mc/sec: 6447.51
//
Query:       EHT97884.1  [L=231]
Description: hypothetical protein CKS_5413 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1769.10
//
Query:       EHT97885.1  [L=266]
Description: putative DSBA oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-18   65.9   1.1    2.9e-17   63.3   0.0    2.0  2  Thioredoxin_4  Thioredoxin
    1.4e-14   53.6   4.9    5.9e-14   51.6   4.9    2.2  1  ScsC_N         Copper resistance protein ScsC N-terminal doma
    8.4e-13   48.5   5.4    4.6e-12   46.1   2.1    2.6  2  DSBA           DSBA-like thioredoxin domain
    8.7e-11   42.2   1.7    3.3e-09   37.2   0.2    2.9  2  Thioredoxin_2  Thioredoxin-like domain
    0.00081   19.3   0.1       0.02   14.9   0.1    2.4  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
       0.01   16.2   0.1        2.5    8.5   0.1    2.6  3  Thioredoxin_8  Thioredoxin-like
      0.072   13.8   0.2       0.22   12.2   0.0    2.0  2  DUF2946        Protein of unknown function (DUF2946)


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.6      0.13   3.2e+02      65     103 ..      39      80 ..      27      90 .. 0.64
   2 !   63.3   0.0   1.1e-20   2.9e-17       3     146 ..      89     230 ..      87     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
                    HHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-...HHHHH CS
  Thioredoxin_4  65 kaamaarcageespeaflaikallysqqeewaes...lkela 103
                    + + +a+ ++  +pe   ++++ l+ qq+e +++   ++ ++
     EHT97885.1  39 RIGEIAKDYLLAHPEVLVEVSQKLQAQQQEKQQQamtAAVIQ 80 
                    555666677777888888888889999999888833222233 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 1.1e-20
                    SSSEEES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---S..TTTHHHHHHHTT--TT.HHHHHHHHHHHHTHHHHT CS
  Thioredoxin_4   3 etdiviGnpdApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkek..eslkaamaarcagees.peaflaikallysqqeew 95 
                    ++++++G  dA+vtv+e+ d++C +Ca+++ e+ek+++    + +v+f++++fp+ ++    sl+aa     + +++   a+l+++ ++y +  + 
     EHT97885.1  89 KGTPSYGPADAKVTVVEFFDYQCIYCARLAPELEKVIKA---NPDVRFVFKEFPIFGQRwpASLSAAKTGLQVWKQKgADAYLNYHNAIYATGHNE 181
                    67899*******************************999...6**********9987775679999999988888855899999999999887666 PP

                    TS-HHHHH.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEE CS
  Thioredoxin_4  96 aeslkelaaealdkdekfeacleeekldalveaeskeakkagiestPtfii 146
                     +   + + +a++k  kf+a  + ++++ ++    + a+++g+++tP +++
     EHT97885.1 182 GKL-TDADISAAAKAVKFDA-KTAPDVQGTLDGINTLAQQLGFSGTPALVV 230
                    666.4555557778888876.6889***********************998 PP

>> ScsC_N  Copper resistance protein ScsC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   4.9   2.3e-17   5.9e-14       1      33 [.      36      68 ..      36      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 2.3e-17
      ScsC_N  1 QkaaiekivrdYLleNPEiLvEAlqaLqkkqaa 33
                Q+a+i++i +dYLl++PE+LvE++q+Lq++q++
  EHT97885.1 36 QEARIGEIAKDYLLAHPEVLVEVSQKLQAQQQE 68
                9******************************97 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.85   2.2e+03      79      89 ..      63      73 ..      17      92 .. 0.62
   2 !   46.1   2.1   1.8e-15   4.6e-12       1     192 [.     102     257 ..     102     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.85
                GSSHHHHHHHH CS
        DSBA 79 pkdklknstra 89
                +++++++ ++a
  EHT97885.1 63 QAQQQEKQQQA 73
                22222222222 PP

  == domain 2  score: 46.1 bits;  conditional E-value: 1.8e-15
                 EEEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHH CS
        DSBA   1 tvdeffDvlCPyCylgkerleklaarspdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagae 99 
                 tv+effD++C yC   +++lek+++++pdv++v+++f+++g+                        r+          p    ++++ a+  l++ +++
  EHT97885.1 102 TVVEFFDYQCIYCARLAPELEKVIKANPDVRFVFKEFPIFGQ------------------------RW----------P----ASLSAAKTGLQVWKQK 162
                 79****************************************........................34..........3....3557777777777777 PP

                 HGHHHHHHHHHHHHHTSSS-...TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEE........TTCEEEESSSSHHH CS
        DSBA 100 glaekvvrelfealwsegqa...itddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvv........dgkrmvfGadrldt 187
                 g  ++++  +++a++  g +   +td++ + ++a+++ +da+        ++v+ +++    +aq+lg +G+P+ vv        d+  +++G ++ + 
  EHT97885.1 163 G--ADAYLNYHNAIYATGHNegkLTDAD-ISAAAKAVKFDAK------TAPDVQGTLDGINTLAQQLGFSGTPALVVlpstgasaDNVTVIPGYTSAEA 252
                 7..5777777777776554411144444.8888888888773......4599*************************9997666555599********* PP

                 HHHHH CS
        DSBA 188 ladal 192
                 l++a+
  EHT97885.1 253 LQQAI 257
                 **998 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.069   1.8e+02      34      83 ..      45      93 ..      36     102 .. 0.76
   2 !   37.2   0.2   1.3e-12   3.3e-09       5     108 ..      99     256 ..      95     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.069
  Thioredoxin_2 34 tvrvllfp.lkpsfepkavaiwcakekkkafkd..ieenvelarkygvrgtPt 83
                   ++++l++p +  ++++k +a +++k++ +a+++  i+ + +l++    +gtP+
     EHT97885.1 45 KDYLLAHPeVLVEVSQKLQAQQQEKQQ-QAMTAavIQHQAALLND---KGTPS 93
                   678889999777888999999999998.79999777777666665...66776 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 1.3e-12
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkel....ddvtvrvllfp.lkpsfepkavaiwcakekkkafkd.............................. 65 
                     k ++v f d +C yC++l  el+++    +dv++    fp +++   p++ +  ++  +   +k+                              
     EHT97885.1  99 AKVTVVEFFDYQCIYCARLAPELEKVikanPDVRFVFKEFPiFGQR-WPASLSAAKTGLQ--VWKQkgadaylnyhnaiyatghnegkltdadisa 191
                    6889999*******************9999******9999974444.3333333333332..3565666677778999999999************ PP

  Thioredoxin_2  66 ..................ieenvelarkygvrgtPtivfldgk....eivarlpGyvpaeeleal 108
                                      ++  + la+++g +gtP++v+l+ +      v+++pGy++ae l+++
     EHT97885.1 192 aakavkfdaktapdvqgtLDGINTLAQQLGFSGTPALVVLPSTgasaDNVTVIPGYTSAEALQQA 256
                    ******************9999**************99888887999999************997 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   7.9e-06      0.02      18      53 ..      99     133 ..      96     139 .. 0.85
   2 ?    1.8   0.0     0.092   2.3e+02      60     101 ..     212     257 ..     186     259 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.9e-06
                  SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEE CS
  Thioredoxin  18 kklvlveFyApwCghCkalaPeleklaeelkdkvkl 53 
                  +k  +veF+   C  C +laPelek+ ++   +v++
   EHT97885.1  99 AKVTVVEFFDYQCIYCARLAPELEKVIKANP-DVRF 133
                  6789**********************99988.4443 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.092
                  TSHHHHHHTT-SSSSEEEEEETTE....EEEEEESS-HHHHHHHHH CS
  Thioredoxin  60 enedlakkyevegiPtlklfkngk....evkkyegarekeklaafl 101
                    ++la++++ +g P+l+++++      +v  + g  ++e+l++ +
   EHT97885.1 212 GINTLAQQLGFSGTPALVVLPSTGasadNVTVIPGYTSAEALQQAI 257
                  557899999********99887553444455555667777777665 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.4   8.7e+03      41      52 ..      58      69 ..      44      82 .. 0.54
   2 ?    8.5   0.1   0.00098       2.5       2      39 ..     100     134 ..      98     136 .. 0.85
   3 ?    4.9   0.0     0.013        33      69      92 ..     211     234 ..     185     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.4
                   EE-SS-HHHHHH CS
  Thioredoxin_8 41 vsldkkeeefek 52
                   vs   + +++ek
     EHT97885.1 58 VSQKLQAQQQEK 69
                   333222233333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00098
                    SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEE CS
  Thioredoxin_8   2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveiv 39 
                    kv+++ f++++c  c++  p+l ++ +      +v++v
     EHT97885.1 100 KVTVVEFFDYQCIYCARLAPELEKVIKANP---DVRFV 134
                    89********************99877764...66666 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.013
                    T-HHHHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8  69 kkrnklkkkynvkaiPtlvvldkn 92 
                    + +n+l+++++ ++ P lvvl + 
     EHT97885.1 211 DGINTLAQQLGFSGTPALVVLPST 234
                    5589****************9765 PP

>> DUF2946  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.8   1.2e+04      88      88 ..      18      18 ..       7      36 .. 0.39
   2 ?   12.2   0.0   8.4e-05      0.22      20      70 ..      65     118 ..      48     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.8
     DUF2946 88 e 88
                 
  EHT97885.1 18 L 18
                1 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.4e-05
     DUF2946  20 aaaaaaaasllagaicsadgs...aysaaytaagagspasamdseaCgyCslla 70 
                 +++  ++++++a++i + ++    +  ++y++a+a+  + ++++ +C yC+ la
  EHT97885.1  65 QQQEKQQQAMTAAVIQHQAALlndKGTPSYGPADAKVTVVEFFDYQCIYCARLA 118
                 577777888888888888888*****************************7554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1483  (0.0827152); expected 358.6 (0.02)
Passed bias filter:                      865  (0.0482459); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1899.48
//
Query:       EHT97886.1  [L=181]
Description: endonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-27   94.1   0.3    7.3e-27   93.9   0.3    1.1  1  PLDc_2          PLD-like domain
      3e-05   23.7   0.1     0.0018   17.9   0.1    2.0  1  FAM83           FAM83 A-H
    0.00092   18.5   0.0      0.001   18.3   0.0    1.1  1  Regulator_TrmB  Archaeal transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.027   14.2   0.3      0.037   13.7   0.3    1.3  1  CmcI            Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.3   1.6e-30   7.3e-27       2     133 .]      46     171 ..      45     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.6e-30
      PLDc_2   2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsN 100
                 +++i+sA++ i++  y+f +++e++ a+++a++rgv+v+i+ld+    +g   +as++ ++ +  +ag+++r    +  ++H+K++++d++tv  GS+N
  EHT97886.1  46 LKTIESAQHDIRLMGYSF-TSPEVVSAIVRAKHRGVDVKIVLDE----KGNKSKASQAAMNVV-VNAGIPLRTN-GHYAIMHDKVIIVDNHTVESGSFN 137
                 579***************.************************9....344455777777777.******9973.3578******************** PP

      PLDc_2 101 ltkrgldlnlElnvviedk.elakeleeeFerlw 133
                 +t+++ ++n E+ +vi d  e+a+ + ++ ++ w
  EHT97886.1 138 MTRSAASRNSENVLVINDVpEVAQAYLQHWQSRW 171
                 *****************98899**9999999988 PP

>> FAM83  FAM83 A-H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   4.1e-07    0.0018     128     253 ..      43     153 ..      27     156 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.1e-07
       FAM83 128 evvrkliqkaqkviavvmdvftDvdilkdlleaaskrkvpvyilLdeknlklflemceklqvnkqhlknlrvRsvkGetyltrsgkkvkGqlkekfllv 226
                 ++v k+i++aq+ i ++ + ft  ++++ ++ a   r+v v i+Ldek+ k+  +   ++         ++v +  G  + t         +++k ++v
  EHT97886.1  43 QLVLKTIESAQHDIRLMGYSFTSPEVVSAIVRAKH-RGVDVKIVLDEKGNKSKAS---QAA--------MNVVVNAGIPLRTNGH---YAIMHDKVIIV 126
                 67889**************************9865.88*********88776533...333........3444444444333333...33578899999 PP

       FAM83 227 DgekvlsGsYsftWsssrlhrnlvtvl 253
                 D ++v sGs+ +t s++  ++++v v+
  EHT97886.1 127 DNHTVESGSFNMTRSAASRNSENVLVI 153
                 999999999999999988888877765 PP

>> Regulator_TrmB  Archaeal transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.3e-07     0.001      15      72 ..      45     104 ..      38     178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.3e-07
                     HHHHHHH-SSEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEESS..----GGGSSSSEEE CS
  Regulator_TrmB  15 ieelIesAenelivslpselLeelreeliaaaergvtVllliyp..dedleeldleevat 72 
                     + + IesA++++ +++ s   +e+ + + +a+ rgv V +++ +  ++ ++ +  ++v++
      EHT97886.1  45 VLKTIESAQHDIRLMGYSFTSPEVVSAIVRAKHRGVDVKIVLDEkgNKSKASQAAMNVVV 104
                     6689****************************************6533333333333333 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   8.2e-06     0.037      82     152 ..      51     126 ..      40     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.2e-06
        CmcI  82 plasrieliegssvdpeiveqvkslakekekvlvilDsdHtheh.....vlaeLeayaplvsaGsYivveDtvied 152
                   +++i l+  s ++pe+v+ + + ++++  v ++lD + ++ +        +++a  pl ++G+Y++  D vi  
  EHT97886.1  51 SAQHDIRLMGYSFTSPEVVSAIVRAKHRGVDVKIVLDEKGNKSKasqaaMNVVVNAGIPLRTNGHYAIMHDKVIIV 126
                 37899********************************7655544100003445667789************98743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1398.66
//
Query:       EHT97887.1  [L=92]
Description: DNA replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-38  128.5   0.9    7.9e-38  128.3   0.9    1.0  1  RepB-RCR_reg  Replication regulatory protein RepB


Domain annotation for each model (and alignments):
>> RepB-RCR_reg  Replication regulatory protein RepB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.9   4.4e-42   7.9e-38       1      79 [.       1      81 [.       1      83 [. 0.98

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 4.4e-42
  RepB-RCR_reg  1 msqienavtssl..kriyrkGkPltdaekqrlsvsrkklthkeikvfiknelkdslvqlCeeeGitqaqlieklikkelak 79
                  msq+enavtss+  kr yrkGkP++ +e+q ++++rk+ thke+kvf+kn+lkd +  +CeeeG+tqaq+ie l+++el +
    EHT97887.1  1 MSQVENAVTSSSkeKRSYRKGKPMSASERQLAAIARKRETHKEVKVFVKNPLKDWMITICEEEGLTQAQFIETLLERELSE 81
                  9**********9999***************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 668.40
//
Query:       EHT97888.1  [L=291]
Description: DNA replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-30  104.5   0.1    7.8e-30  104.0   0.1    1.1  1  IncFII_repA  IncFII RepA protein family


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.1   4.4e-34   7.8e-30       5     252 ..      17     257 ..      13     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 4.4e-34
  IncFII_repA   5 yvknpsPlftpPkeekkrPafikyalkaakekdvarsellyilklkdvktglilkrerrlnehraralralveallyhlniasglveasveqlsDeCG 102
                   vknp+P ftp + +k  P f + ++ +a+    +r +         + + ++ kr+r     r ra++al++ l  h++  +++v+ s+ +l+ eCG
   EHT97888.1  17 QVKNPNPAFTPREGKKTLP-FCRKLMAKAEGF-TSRFDFSVH----VAFVRSLGKRHRMPPLLRRRAIDALLQGLCFHYDPLANRVQRSITNLAIECG 108
                  59*******9666555555.888888888765.566665433....3567888899999999************************************ PP

  IncFII_repA 103 LstvskaGnksitrasrlitefleplGlvkCekvWDkilesyiPkiitlteLffvLidvskeklksakkqqlgWinkkLrekGekpitlvearrrake 200
                  L+t sk+Gn sitra+r++ +f+ +lGl++ +  +D  +++ iP  it t+ +f  +d+s   +  a++ +++W+n++ +++ +kp+ + e   +a  
   EHT97888.1 109 LATESKTGNLSITRATRAL-KFMAELGLITYQTEYDPQIGCNIPTDITFTPALFSALDISDVAVVAARRSRVEWENQQRQKQRLKPLEMDELIAKAWR 205
                  ******************9.58*********************************************************************9999987 PP

  IncFII_repA 201 khikkaleyrkkkhalkkkkrkarkleeldekearktilkdlvkkyskeeLa 252
                     ++  +y+ +++    k+ +ar+ ++   k++   + ++l + y++  ++
   EHT97888.1 206 FVRERFRSYQSERKQHGLKRARARRDADRTRKDIVTLVKQQLTREYATGRFT 257
                  7666777899999999999999**9999999999999999999999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2106.02
//
Query:       EHT97889.1  [L=336]
Description: IS1663 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-25   89.4   0.0    3.5e-25   88.7   0.0    1.3  1  DEDD_Tnp_IS110  Transposase
    6.5e-18   64.8   0.0    1.2e-17   64.0   0.0    1.4  1  Transposase_20  Transposase IS116/IS110/IS902 family


Domain annotation for each model (and alignments):
>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   3.9e-29   3.5e-25       1     148 [.       4     154 ..       4     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 3.9e-29
  DEDD_Tnp_IS110   1 vGiDvakdkhdacvidaegk.vllservpndeeglealleklaaka...gevlvvveatghygallvaflleagitvvvvnplavkrlrklylrk 91 
                     +GiDv+k++ d c++ +  k +++++r++nd ++ ++++++l++++    +v++++eatg y+ +l++ l  ag +v + np  ++++++ ++  
      EHT97889.1   4 LGIDVSKNTLDLCLLREGVKgRVKTRRIKNDVNAASTVITWLGKQQcapADVHIIMEATGIYHESLAYGLYRAGAKVSLANPHRSREFARGMDIL 98 
                     5**************98766366778*******999999996665545599******************************************** PP

  DEDD_Tnp_IS110  92 aKtDakDAkvIAdllrdrgrlrplklddeayaeLrqltrqredlvkertrlknrlra 148
                     +K+D++DA+++A ++   +  +p  +++e ++ L  l r+r+ lv +r+r+knrl +
      EHT97889.1  99 TKNDQVDAYMLACYGA-LKVPEPWVPPPESVRYLCALLRRRDALVTDRSREKNRLEK 154
                     ***************9.999***********************************87 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.3e-21   1.2e-17       3      87 .]     202     286 ..     201     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.3e-21
  Transposase_20   3 lLesipGiGpvtaaallaeigdlrrfksakqlaayaGlapvenqSGkkkr.rgriskrGnrrlRraLyeaAlaairanpelrayye 87 
                     lL+si+ +G+++ +++l+ ++  ++f++a+q+aa++G++pve++SG+++r + ++sk+G +++R+ Ly   ++ +r+np ++a ye
      EHT97889.1 202 LLTSIKSVGFQLGLNMLVILRS-HHFDTAEQVAAFLGVVPVERSSGTSVRnKPKLSKNGPPEIRAKLYLSSMCGLRFNPAMKAIYE 286
                     79******************88.6***********************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2455.56
//
Query:       EHT97890.1  [L=407]
Description: putative outer membrane adhesion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   11.5   0.0       0.32   10.9   0.0    1.2  1  TSP_C     Thrombospondin C-terminal region


Domain annotation for each model (and alignments):
>> TSP_C  Thrombospondin C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.8e-05      0.32      96     156 ..     302     362 ..     281     395 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.8e-05
       TSP_C  96 ksttGpgealrnalwhtkdtknqvkllwkdpkkkgwkertaYrwelkhrpsiglirvvvye 156
                 +s+t  +++l+ ++++ k++k++++ l +d  + + + r  Y+ +l h  ++g+    +++
  EHT97890.1 302 NSRTISSTTLKRKIYNLKNKKKYISALERDTLDSANELRLFYEKHLAHVKEQGYKNTALHS 362
                 7899999*********************************************997655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3107.00
//
Query:       EHT97891.1  [L=104]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-17   62.8  11.5    2.8e-17   62.5  11.5    1.1  1  Zn_Tnp_IS91  Transposase zinc-binding domain
  ------ inclusion threshold ------
      0.052   13.7   9.5       0.08   13.1   9.5    1.4  1  zf-piccolo   Piccolo Zn-finger
       0.16   12.1   9.4       0.26   11.5   9.4    1.4  1  zf-B_box     B-box zinc finger


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5  11.5   4.7e-21   2.8e-17      27      91 .]       1      67 [.       1      67 [. 0.96

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 4.7e-21
  Zn_Tnp_IS91 27 ilrCrtaalGfaryeCee..CghekivyfsCksrhCpsCqkkateewlekqqeellp.vpyrhvvfTl 91
                 +l+C+t ++G++r++C +  C+h++++++sCks++C+ C+ kate+w+ +qq+++lp ++++h++fT+
   EHT97891.1  1 MLACGTTEMGVRRFCCASpdCTHSRFFCQSCKSKACSACGFKATEQWV-SQQSHILPdCDWQHITFTM 67
                 799*************9666****************************.899***************7 PP

>> zf-piccolo  Piccolo Zn-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   9.5   1.3e-05      0.08      22      54 ..      27      59 ..       4      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
  zf-piccolo 22 tCteCkkqvCnlCGFnptphltekkeWlclnCQ 54
                 C +Ck++ C++CGF  t + ++++  +   C 
  EHT97891.1 27 FCQSCKSKACSACGFKATEQWVSQQSHILPDCD 59
                5****************9999888776666665 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   9.4   4.4e-05      0.26       6      30 ..      16      49 ..      12      67 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
    zf-B_box  6 CpeHknkpatlfCedCqqplCeeC.........s 30
                C   ++ + ++fC++C++  C+ C         s
  EHT97891.1 16 CASPDCTHSRFFCQSCKSKACSACgfkateqwvS 49
                555455899***************7765555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 844.52
//
Query:       EHT97892.1  [L=421]
Description: putative outer membrane adhesion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.099   11.6   7.1       0.14   11.1   7.1    1.2  1  DUF5585   Family of unknown function (DUF5585)


Domain annotation for each model (and alignments):
>> DUF5585  Family of unknown function (DUF5585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.1     8e-06      0.14     148     216 ..     156     226 ..     124     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8e-06
     DUF5585 148 artaiassvaaa..ssiPttaassavstlvpvsgtvtsavatghPslstalaqvpssssaartaalatlat 216
                    a+a svaaa  +   tt+ + +   l  ++g+++ a+  ++P++s +l  v+ ++  a+ aa a++a 
  EHT97892.1 156 GAIAAAGSVAAAwsAASATTLVVGGLGLLADATGIASGATEDVNPAASSVLGWVSVATGIAGMAAGAAMAP 226
                 445566666665212346899999****************************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3367.08
//
Query:       EHT97893.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97893.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97893.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97893.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97893.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 845.45
//
Query:       EHT97894.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-39  133.8   0.0      2e-39  133.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.1e-43     2e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.1e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97894.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDLIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 939.55
//
Query:       EHT97895.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.6   3.4    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.1   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.042   13.4   2.1      0.052   13.1   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.049   12.2   7.0      0.078   11.5   7.0    1.3  1  FUSC             Fusaric acid resistance protein family
      0.054   12.7   1.5       0.11   11.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.15   12.4   3.6       0.93    9.9   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   12.0   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.7   5.7       0.25   11.1   5.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
        0.2   10.9   0.3       0.32   10.2   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.21   11.3   2.2        0.8    9.4   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.23   11.2  10.2       0.38   10.5  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   11.6   3.7       0.55   10.6   1.8    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.47   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
          1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
        3.6    7.1   7.2        9.3    5.7   7.2    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.2    7.1   8.7         12    6.6   1.6    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5      0.12   1.1e+02     167     214 ..      34      82 ..      21     121 .. 0.47
   2 !  323.5   0.0   1.4e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   + i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT97895.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   46666666667777777777763334432...33333333333333322211 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.4e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97895.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97895.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97895.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.5e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.5e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97895.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.8e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97895.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   2.9e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.9e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97895.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   5.8e-05     0.052     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.4   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97895.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334444455555555566666677789999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97895.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.0   8.7e-05     0.078     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT97895.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00012      0.11      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97895.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3     0.001      0.93      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT97895.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97895.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   2.3e+03      26      52 ..      16      42 ..       9      60 .. 0.74
   2 ?    3.2   0.0     0.093        83      15      53 ..      64     102 ..      54     108 .. 0.81
   3 ?    5.1   0.0     0.023        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
         UME 26 laekkraikaleeliklagssissalp 52
                l+e++ +i+ + e  +l++++++ ++ 
  EHT97895.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYAS 42
                678888888888888888888766554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.093
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97895.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97895.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.7   0.00028      0.25     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97895.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00034      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97895.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00036      0.32      24      76 ..      37      91 ..      32     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97895.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00089       0.8     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.21   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT97895.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97895.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.2   0.00042      0.38      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97895.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00061      0.55       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00061
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT97895.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT97895.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.6   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT97895.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT97895.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0011      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHT97895.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0018       1.6      12      92 ..      13      95 ..       7     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97895.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55566667888999999999999999999999999999999999997744224445555555555555555555777776655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.2      0.01       9.3      71     152 ..      14      97 ..       2     102 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97895.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666667777888889999999998877644677888999**********************998765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.6     0.014        12      22      53 ..      12      43 ..       9      65 .. 0.88
   2 ?    2.5   1.7      0.25   2.3e+02      34      57 ..      68      91 ..      44     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97895.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97895.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888988888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1074  (0.059903); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 3595.78
//
Query:       EHT97896.1  [L=259]
Description: IS1663 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-25   90.3   0.0    1.8e-25   89.7   0.0    1.2  1  DEDD_Tnp_IS110  Transposase
    9.7e-10   38.6   0.0    1.7e-09   37.8   0.0    1.4  1  Transposase_20  Transposase IS116/IS110/IS902 family


Domain annotation for each model (and alignments):
>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0     2e-29   1.8e-25       1     148 [.       4     154 ..       4     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 2e-29
  DEDD_Tnp_IS110   1 vGiDvakdkhdacvidaegk.vllservpndeeglealleklaaka...gevlvvveatghygallvaflleagitvvvvnplavkrlrklylrk 91 
                     +GiDv+k++ d c++ +  k +++++r++nd ++ ++++++l++++    +v++++eatg y+ +l++ l  ag +v + np  ++++++ ++  
      EHT97896.1   4 LGIDVSKNTLDLCLLREGVKgRVKTRRIKNDVNAASTVITWLGKQQcapADVHIIMEATGIYHESLAYGLYRAGAKVSLANPHRSREFARGMDIL 98 
                     5**************98766366778*******999999996665545599******************************************** PP

  DEDD_Tnp_IS110  92 aKtDakDAkvIAdllrdrgrlrplklddeayaeLrqltrqredlvkertrlknrlra 148
                     +K+D++DA+++A ++   +  +p  +++e ++ L  l r+r+ lv +r+r+knrl +
      EHT97896.1  99 TKNDQVDAYMLACYGA-LKVPEPWVPPPESVRYLCALLRRRDALVTDRSREKNRLEK 154
                     ***************9.999***********************************87 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.9e-13   1.7e-09       2      52 ..     201     250 ..     200     257 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.9e-13
  Transposase_20   2 elLesipGiGpvtaaallaeigdlrrfksakqlaayaGlapvenqSGkkkr 52 
                     +lL+si+ +G+++ +++l+ ++  ++f++a+q+aa++G++pve++SG+++r
      EHT97896.1 201 DLLTSIKSVGFQLGLNMLVILRS-HHFDTAEQVAAFLGVVPVERSSGTSVR 250
                     58*******************88.6***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1921.74
//
Query:       EHT97897.1  [L=189]
Description: hypothetical protein CKS_5399 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.4   1.0       0.17   12.4   1.0    1.5  1  SF3A3     Pre-mRNA-splicing factor SF3A3, of SF3a complex, Pr


Domain annotation for each model (and alignments):
>> SF3A3  Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.0   9.6e-06      0.17      20      57 ..     135     177 ..     133     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.6e-06
       SF3A3  20 eylnlkeik...ldYlqYLesfdkfseip..kkqkkskeYkeY 57 
                 +yln+ ++    l+   YLe+fd+f++i+  k++  ++eY+ Y
  EHT97897.1 135 TYLNIIGFLseyLSLRGYLENFDDFKNIEsyKEKALEDEYSFY 177
                 78999855324577778***********975555558999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1382.30
//
Query:       EHT97898.1  [L=66]
Description: putative antitoxin of gyrase inhibiting toxin-antitoxin system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   88.3   1.4    3.4e-25   88.2   1.4    1.0  1  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   1.4   1.9e-29   3.4e-25       7      71 .]       2      66 .]       1      66 [] 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1.9e-29
        CcdA  7 sldsdllaqAralgiNlSatleeaLaeevkeekaerwkeenreaieelNrfveehGlfsdeyRrF 71
                +++++ll +Ar++giNlSatl++aL++e+++ +a++w+een ea+e+lNrf++ehG+fsdeyR+F
  EHT97898.1  2 TVERALLSRAREAGINLSATLTAALDAELRQYEAKKWQEENNEALEALNRFHDEHGCFSDEYRTF 66
                8999***********************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 524.18
//
Query:       EHT97899.1  [L=104]
Description: CcdB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-29  101.2   0.0    3.3e-29  101.0   0.0    1.0  1  CcdB      CcdB protein


Domain annotation for each model (and alignments):
>> CcdB  CcdB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   1.9e-33   3.3e-29       1     100 []       2     103 ..       2     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 1.9e-33
        CcdB   1 qFdvYrnpsaskkaipylldvqsdlldelktrvVvPLlraselsk..vakrLnpvle.vegeevvlltaelaavpakeLgkkvaslseerdeiiaAlDl 96 
                 qF+vY n+++s + +p+lldv+sd++ +l++r+V+PLl++++++    ++rL+p ++  +++e++++t+e+a++pa+ Lg+ ++++s +r+e++aA+D+
  EHT97899.1   2 QFTVYSNTGKS-AVYPLLLDVTSDIIGQLNRRIVIPLLPVEKYPGstRPERLVPLVRlTDDKEYAVMTHEMASIPARFLGAAFCDASPYRTEVKAAIDF 99 
                 9**********.*******************************99999*********668899************************************ PP

        CcdB  97 lltG 100
                 ll+G
  EHT97899.1 100 LLDG 103
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 764.22
//
Query:       EHT97900.1  [L=54]
Description: hypothetical protein CKS_5396 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.4   0.4      0.022   14.4   0.4    1.0  1  DUF4956   Domain of unknown function (DUF4956)


Domain annotation for each model (and alignments):
>> DUF4956  Domain of unknown function (DUF4956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.2e-06     0.022      25      63 ..       6      44 ..       3      54 .] 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-06
     DUF4956 25 tflllnvgvfavvlllasvevsiglglGLfgvlsilRlR 63
                 ++ll++  +++v++las  ++  +g+GL  ++++l + 
  EHT97900.1  6 RMMLLSIYAYLLVVFLASGAADKWIGIGLCVLFGVLSYK 44
                5899************99999988888887777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 407.23
//
Query:       EHT97901.1  [L=256]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-76  254.1   0.0    1.1e-75  253.7   0.0    1.1  1  DUF1460   Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0     6e-80   1.1e-75       2     210 ..      51     248 ..      50     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.7 bits;  conditional E-value: 6e-80
                 HHHHTTT-BB-TT---S-TT-S-S-SS-SS-B-HHHHHHHHHHHHHBSSHHHHHHHHHHHHBGGG--STTTB--STTTHHHHHHHTSEEE-GGG-B-TT CS
     DUF1460   2 israflgtpYkagtLiesaeekeklvirfdglDCftyvetvlalarssseeeFaknLkklRYkdgkvsflsRkHffsdWiannqkrllrdvtaeisnkk 100
                 +s+aflgtpY+a+tLi+++ ++e lv++f+g+DCft+ ++v+al+rs+++++F +nL+++RY++g+v++lsR+HffsdW+++++++ +rdvt +is+  
  EHT97901.1  51 VSSAFLGTPYQADTLIGGPGTPEALVVNFNGVDCFTLADYVEALTRSHDQKSFLHNLTEVRYTGGNVDYLSRRHFFSDWFTTAPRN-ARDVTPDISP-- 146
                 89***********************************************************************************9.**********.. PP

                 -EEE--EEEHHHHHHTHHHHHHHHHHHHHHHTT--EEEEEEHHHH-HHHHTTS-TT-EEEEEEEES-EEEEEEEEEEEETTEEEEEEEETTTTE..EEE CS
     DUF1460 101 aktlkalvtkkkkynqkadeeellaglkvvekalkklkYipkealdqavlsrlktGdiiaivtektgLdVsHvGlvirkndelvlrhASslkkkkkvvd 199
                      ++   +k++n+k d++e+++gl+++ +++   +Yip +++ q+vl+rlktGd+++++++++gLdVsHvG+v+r+++++++r+ASsl++++kvvd
  EHT97901.1 147 -----DYAVADKQLNRKPDGGEYIPGLGIHPRKI---NYIPGNTISQQVLDRLKTGDYVGVYSPLEGLDVSHVGIVVRHDGQVWFRNASSLAANRKVVD 237
                 .....888899***********************...************************************************************** PP

                 EEHHHHHHHHT CS
     DUF1460 200 eplldylkkkk 210
                 +p+l+y++ k+
  EHT97901.1 238 SPFLEYMRAKP 248
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1891.32
//
Query:       EHT97902.1  [L=54]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0097   16.3   0.0     0.0097   16.3   0.0    1.1  1  N_NLPC_P60  NLPC_P60 stabilising domain, N term


Domain annotation for each model (and alignments):
>> N_NLPC_P60  NLPC_P60 stabilising domain, N term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0097      54      78 ..       2      33 ..       1      52 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-07
                -HHHHHHHHHHHHHHHC.......GGGG-SS- CS
  N_NLPC_P60 54 saaeqaaldeefrrryF.......aPWnqtkl 78
                + a+q++++ ++++ryF       +PWn   +
  EHT97902.1  2 DTAAQQRHFSDLKSRYFgmgagekSPWNPSYI 33
                6799************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       137  (0.00764125); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 435.09
//
Query:       EHT97903.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-98  327.3   4.1    3.2e-97  325.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    8.1e-15   54.9   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.8   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.029   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.036   12.6   6.9      0.056   12.0   6.9    1.3  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  325.4   0.0  3.8e-100   3.2e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHT97903.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 325.4 bits;  conditional E-value: 3.8e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT97903.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT97903.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT97903.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT97903.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT97903.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT97903.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT97903.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT97903.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT97903.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT97903.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT97903.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT97903.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT97903.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT97903.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT97903.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT97903.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT97903.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT97903.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT97903.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT97903.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT97903.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT97903.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT97903.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT97903.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT97903.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT97903.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT97903.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT97903.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT97903.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT97903.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                     1024  (0.0571142); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 3743.27
//
Query:       EHT97904.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT97904.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 918.25
//
Query:       EHT97905.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT97905.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT97905.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT97905.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT97905.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 750.92
//
Query:       EHT97906.1  [L=49]
Description: mutator family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 368.40
//
Query:       EHT97907.1  [L=67]
Description: hemolysin expression modulating protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-28   99.4   0.2    1.2e-28   99.2   0.2    1.0  1  HHA       Haemolysin expression modulating protein


Domain annotation for each model (and alignments):
>> HHA  Haemolysin expression modulating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.2   6.6e-33   1.2e-28       1      57 []       8      64 ..       8      64 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 6.6e-33
                HHHHT---HHHHHHHHHHHHHHS-HHHHHHHHHHHTHHHHHHHTTS---S--THHHH CS
         HHA  1 lrlRrcssidtlEkvieklkyeltddEllefysAaDHRrAELvsgkLyDkvPksvWk 57
                +r+Rr++++ tlE+v+e+lkye + +E l+f++A+DHR+AEL++gkL+D+vP++vWk
  EHT97907.1  8 MRFRRYRTMGTLETVYEHLKYEGDPKEELAFTAAYDHRKAELTVGKLFDRVPAHVWK 64
                9*******************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 533.09
//
Query:       EHT97908.1  [L=56]
Description: putative transposase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-11   44.1   0.1    2.2e-11   43.9   0.1    1.1  1  HTH_Tnp_1     Transposase
    3.9e-06   26.9   0.1    4.4e-06   26.7   0.1    1.1  1  HTH_28        Helix-turn-helix domain
    7.5e-06   25.6   0.1    8.7e-06   25.4   0.1    1.1  1  HTH_23        Homeodomain-like domain
    0.00033   20.2   0.0    0.00038   20.0   0.0    1.1  1  CENP-B_N      CENP-B N-terminal DNA-binding domain
    0.00037   20.3   0.1    0.00051   19.9   0.1    1.2  1  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
    0.00074   19.5   0.0    0.00095   19.2   0.0    1.1  1  HTH_7         Helix-turn-helix domain of resolvase
     0.0076   15.7   0.0     0.0088   15.4   0.0    1.1  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
  ------ inclusion threshold ------
      0.087   13.0   0.0      0.088   13.0   0.0    1.0  1  GP3_package   DNA-packaging protein gp3
      0.098   12.8   0.2       0.77    9.9   0.1    1.9  2  MerR_1        MerR HTH family regulatory protein
        0.1   12.7   0.4       0.24   11.5   0.4    1.7  1  HTH_22        HTH domain
       0.16   12.0   0.1       0.19   11.8   0.1    1.1  1  HTH_29        Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1   1.3e-14   2.2e-11       8      48 ..      15      55 ..      12      56 .] 0.96

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.3e-14
   HTH_Tnp_1  8 sdefKariVreslepgksvsevArrhgvspnqLykWrrqyr 48
                ++efK+++V+++++ g+svs++A r+++  ++Ly+W++++r
  EHT97908.1 15 PEEFKIEAVKQVVDRGYSVSSIATRLNITTHSLYAWVKKVR 55
                79************************************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   2.7e-09   4.4e-06       1      37 [.      18      55 ..      18      56 .] 0.92

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.7e-09
      HTH_28  1 qRleiiklla.aGhsvreaArelgisrrtvyrWikrye 37
                +++e++k++  +G sv+ +A +l+i+  ++y W+k+ +
  EHT97908.1 18 FKIEAVKQVVdRGYSVSSIATRLNITTHSLYAWVKKVR 55
                79******995788*********************966 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   5.3e-09   8.7e-06       8      40 ..      20      53 ..      16      56 .] 0.90

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 5.3e-09
      HTH_23  8 lrillllae.GlsvreIAreLgvsrrTvyrwlkr 40
                +++++ + + G+sv+ IA++L+++ + +y w+k+
  EHT97908.1 20 IEAVKQVVDrGYSVSSIATRLNITTHSLYAWVKK 53
                6788888889***********************8 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.3e-07   0.00038      12      45 ..      19      53 ..      15      56 .] 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.3e-07
                HHHHHHH.HHCTT-HHHHHHHHT--CCHHHHHHHC CS
    CENP-B_N 12 KievIqr.leegeSkaelarrfnvpestlsdilkn 45
                Kie++++ +++g S+ ++a r+n+    l+ ++k+
  EHT97908.1 19 KIEAVKQvVDRGYSVSSIATRLNITTHSLYAWVKK 53
                8888865279999********************98 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.1e-07   0.00051      13      37 ..      30      54 ..      29      56 .] 0.93

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.1e-07
  Terminase_5 13 GyrvaeIAeelglkeatVysWkkrd 37
                 Gy+v +IA+ l++   + y+W+k+ 
   EHT97908.1 30 GYSVSSIATRLNITTHSLYAWVKKV 54
                 9*********************985 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.8e-07   0.00095       9      39 ..      17      48 ..       9      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.8e-07
                H.HHGGGGSSTTTT--STTTSSSS---SSSS- CS
       HTH_7  9 n.dinrvvkLleeGisiskIAkevnisRsTvY 39
                + +i+ v++ ++ G+s+s IA ++ni+  ++Y
  EHT97908.1 17 EfKIEAVKQVVDRGYSVSSIATRLNITTHSLY 48
                467999*********************99999 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.4e-06    0.0088      16      50 ..      18      53 ..      15      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.4e-06
  HTH_Tnp_ISL3 16 leayilellles.rsvkavArqlgvSwtTVwrildr 50
                  ++  +++++ ++  sv+++A +l+++++++  +++ 
    EHT97908.1 18 FKIEAVKQVVDRgYSVSSIATRLNITTHSLYAWVKK 53
                  77789999999999*****************99985 PP

>> GP3_package  DNA-packaging protein gp3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.4e-05     0.088      12      65 ..       1      53 [.       1      56 [] 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHHHHHHS-EEEEE...EEEE-----HHHHHHHHT--HHHHHHHGG. CS
  GP3_package 12 LaakakeYfewcdaeplkeakegyevvgdraptvtGLalyLgisrstlkeyekr 65
                 +++k + Y+   +a    ++++ +++v dr ++v+ +a  L+i+  +l+ + k+
   EHT97908.1  1 MQTKQNDYLLFNKAPEEFKIEA-VKQVVDRGYSVSSIATRLNITTHSLYAWVKK 53
                 5677788888555554555656.66677*********************99886 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.32   5.2e+02      55      67 ..      16      28 ..      13      30 .. 0.80
   2 ?    9.9   0.1   0.00047      0.77       1      23 [.      31      53 ..      31      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.32
                TT--GGG---XXX CS
      MerR_1 55 rGltlkgikklln 67
                + ++++++k++ +
  EHT97908.1 16 EEFKIEAVKQVVD 28
                5689999999976 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
                EEHHHHHHHHTS-HHHHHHHHHH CS
      MerR_1  1 ysigevakilgvtthtlryweke 23
                ys++  a +l++tth l  w k+
  EHT97908.1 31 YSVSSIATRLNITTHSLYAWVKK 53
                99******************986 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00015      0.24      29      60 ..      23      49 ..       4      52 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      HTH_22 29 vraLdekGiFllkgavekvAekLgiSraTvYr 60
                v++  ++G      +v+ +A +L+i+ +++Y 
  EHT97908.1 23 VKQVVDRGY-----SVSSIATRLNITTHSLYA 49
                555555554.....9****************7 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00012      0.19       8      36 ..      27      54 ..      20      56 .] 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      HTH_29  8 laeGvstvsqiAkllglsrrtvyrwlkrf 36
                +++G s vs iA +l+++  + y w+k  
  EHT97908.1 27 VDRGYS-VSSIATRLNITTHSLYAWVKKV 54
                589997.*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 399.64
//
Query:       EHT97909.1  [L=315]
Description: cellulase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-54  184.6   8.8    3.3e-54  184.2   8.8    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   8.8   1.8e-58   3.3e-54       8     279 ..      43     282 ..      32     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 1.8e-58
                 EEGEEECET.....TSCGG..SHHHHHHHHHHHT-SEEEEEEEC...TGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTT CS
   Cellulase   8 vnlkglsts.....wgnpy..ttkalidevkdagfntvRlpvsw...gelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgns 96 
                 vnl g s++     wg ++  ++ ++ d+ ++++  ++R  +++   g+++ ++      + +++rve+vv++a++n++yvi+d+Hs          ++
  EHT97909.1  43 VNLCGNSLFwsntgWGAEKfyNAGSVTDLKNNWHASILRASMGVeyyGGYL-SDR-----QGNIKRVEAVVDAAIKNDMYVIIDWHSS-------HAED 128
                 455555555444448888799**********************83334444.233.....459************************4.......5689 PP

                 THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSGSSSSTTEE CS
   Cellulase  97 sedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavlndPndsqdnli 195
                 ++++a  ff++    +A ry +++++vi+e++NEP      ++w    ++++k ya ++i aIR+ +p++liiv++++ws+++d  ++ dP    +n++
  EHT97909.1 129 QKNDAIIFFQE----MAHRY-GKYPNVIYEIYNEPLN----VSW----VNTIKPYATAVISAIRKEDPDNLIIVGTPNWSQDVDV-AARDPLG-GKNIA 212
                 999999*****....*****.****************....779....9************************************.889**66.7**** PP

                 EEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTSSH..HHHHHHHHHHHHHHHTTTEEEEEEESS CS
   Cellulase 196 ysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGgsnadgd..lakeeaekwldylkekgiswiyWslnp 279
                 y++HfY++++                 q ++++  ++++kg+pv+++E+G+ nadg+  ++ +e ++w+++l++++is+++W++n+
  EHT97909.1 213 YTFHFYAGTH----------------GQPFRNKVMTALNKGLPVFVTEWGTVNADGSgpVNIQETSAWIRFLNNNKISYVNWAYND 282
                 **********................689*****************************9************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2253.06
//
Query:       EHT97910.1  [L=680]
Description: general secretion pathway protein D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-47  161.9   2.1      1e-47  161.9   2.1    2.1  3  Secretin    Bacterial type II and III secretion system protei
    2.8e-31  107.8  18.6    3.3e-14   53.0   6.1    4.4  3  Secretin_N  Bacterial type II/III secretion system short doma


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.21   1.9e+03      53     101 ..     132     182 ..     106     222 .. 0.59
   2 ?   -3.1   0.0      0.59   5.3e+03      11      30 ..     207     226 ..     198     231 .. 0.77
   3 !  161.9   2.1   1.2e-51     1e-47       1     170 []     452     618 ..     452     618 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.21
    Secretin  53 vefkevglsLkvtPqvte...dgsirlkidvevssiassqavtaegnsvpti 101
                 v + + g sL +t +  e    + i l++d + ss +s        n++p++
  EHT97910.1 132 VRYYKPGNSLLITGRADEvraLEAIVLDLDKNSSSRTSVDII-PVRNTKPSV 182
                 555566666666664333211344666666666665542221.133333333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.59
    Secretin  11 lstPklltldneeAeievgq 30 
                  s+Pk+++ d+e+  + +g+
  EHT97910.1 207 FSRPKVVAEDQEKVLLVNGT 226
                 58999999999987766665 PP

  == domain 3  score: 161.9 bits;  conditional E-value: 1.2e-51
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvtedgsirlkidvevssiassqavtaegnsvp 99 
                 ale++++ ++l+tP+++tldn++Ae++vgq++p+ + s t++s+  +  + +ve+++vg + k++  + ++++++l i++e+ss++++++ + + + + 
  EHT97910.1 452 ALESNKHNNILATPSIVTLDNRQAEFNVGQDIPILTGSRTTNSD--NIFN-TVERRTVGFKFKIRSMIDQGNTVQLYISQEISSLTDASTANIDSKLGA 547
                 79*********************************555555333..3444.59**********************************998888999*** PP

    Secretin 100 tisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPrivk 170
                 +++ r ++  v+v++get+viGGl+++e+++++skvPlLgdiP++G LF++t+ +++k++l++fi+P+i++
  EHT97910.1 548 VFNIRTVNNVVQVENGETVVIGGLLDKEQNNRVSKVPLLGDIPWIGGLFRYTSHNDTKRNLMLFIRPHIIR 618
                 *********************************************************************96 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   9.9e-11   8.9e-07       1      80 [.     103     164 ..     103     166 .. 0.96
   2 !   30.1   1.9   5.2e-11   4.6e-07       2      78 ..     171     242 ..     170     246 .. 0.91
   3 !   53.0   6.1   3.7e-18   3.3e-14       2      82 .]     251     373 ..     250     373 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 9.9e-11
                 EEEEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSS CS
  Secretin_N   1 vrvfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDvpr 80 
                 vrv+p ++ s   la+iL ++                    + + g+v+ +   Nsll++g++++v+ ++ ++  LD+ +
  EHT97910.1 103 VRVVPMQNLSGDSLAPILDKFN------------------NNMGVGSVRYYKPGNSLLITGRADEVRALEAIVLDLDKNS 164
                 79********************..................7899*********************************975 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 5.2e-11
                 EEEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCT CS
  Secretin_N   2 rvfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDv 78 
                  ++p+++++++ + +++++++++ +      +++++s +++ ++++vva ++   llv+g+++ ++ +r++i++LD+
  EHT97910.1 171 DIIPVRNTKPSVIKKAVTDIYSNSAD-----SSADSSTDSEFSRPKVVAEDQEKVLLVNGTDKARQAVRSIIARLDK 242
                 68*******************66554.....4679999999***********************************8 PP

  == domain 3  score: 53.0 bits;  conditional E-value: 3.7e-18
                 EEEE-SSS-HHHHHHHHHHHCCTT.......................................................SSTT-TTSEEEEETTTTEEE CS
  Secretin_N   2 rvfpLkyasaadlasiLrellgggggesas..........................................sgassqsgallgkggrvvadprtNsll 58 
                 +vf Lkya+a d+a++L++ +g+ + ++                                             g+s  +g++  kg +v+ad ++N+l+
  EHT97910.1 251 KVFFLKYADAVDMAKLLSSGGGTSSDSNVQnagdvvndtgsgdgdhaqndsgnnfgeqnqllsnnstesssdYGSSLNNGSPIFKGASVQADKANNALV 349
                 7999*****************665555555*****************************************99999999******************** PP

                 EEECHHHHHHHHHHHHHHCTSSSE CS
  Secretin_N  59 vrgspervarirqlikqLDvpraq 82 
                 v +++e++++i+++i++LD++r+q
  EHT97910.1 350 VHAPEEEMRQIESIINKLDIRRNQ 373
                 **********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4625.48
//
Query:       EHT97911.1  [L=452]
Description: general secretion pathway protein E [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-86  287.7   2.7    9.4e-86  287.2   2.7    1.2  1  T2SSE         Type II/IV secretion system protein
    2.6e-05   24.8   0.0    4.1e-05   24.2   0.0    1.2  1  AAA_23        AAA domain
    4.6e-05   23.1   0.0    0.00012   21.8   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
    0.00016   22.0   0.0     0.0021   18.4   0.0    2.3  2  AAA_22        AAA domain
    0.00046   20.6   0.0     0.0013   19.2   0.0    1.8  2  AAA_16        AAA ATPase domain
      0.002   17.9   0.0     0.0035   17.1   0.0    1.4  1  AAA_30        AAA domain
     0.0034   17.3   0.4       0.14   12.1   0.1    2.3  2  NTPase_1      NTPase
     0.0045   17.4   0.0      0.011   16.1   0.0    1.7  1  AAA           ATPase family associated with various cellular 
     0.0045   17.5   0.0      0.012   16.1   0.0    1.7  1  ABC_tran      ABC transporter
     0.0046   16.9   0.0      0.012   15.6   0.0    1.6  2  Rad17         Rad17 P-loop domain
     0.0068   16.2   0.0      0.013   15.3   0.0    1.4  1  AAA_11        AAA domain
      0.007   16.3   0.0      0.012   15.6   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea
     0.0073   16.3   0.0      0.015   15.3   0.0    1.6  1  AAA_14        AAA domain
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.053   13.9   0.0    1.7  1  AAA_19        AAA domain
      0.021   14.2   0.3      0.058   12.7   0.0    1.9  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.032   14.2   0.0       0.07   13.1   0.0    1.7  1  AAA_5         AAA domain (dynein-related subfamily)
      0.032   13.8   0.0      0.058   12.9   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
       0.07   12.7   0.0       0.14   11.7   0.0    1.5  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.19   11.3   0.0       0.32   10.5   0.0    1.3  1  AAA_27        AAA domain
       0.22   11.5   0.0       0.41   10.6   0.0    1.4  1  ResIII        Type III restriction enzyme, res subunit
       0.23   11.2   0.0       0.33   10.7   0.0    1.2  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.2   2.7   1.1e-88   9.4e-86       2     272 ..      74     340 ..      73     341 .. 0.98

  Alignments for each domain:
  == domain 1  score: 287.2 bits;  conditional E-value: 1.1e-88
       T2SSE   2 lilleallddekvsdihvekper.vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp....ekgvrlrvvllPvvagealvi 95 
                 +il++a+  +e++sd+h+e+ ++ + vr+r+dg +l+++ e+e++++++l+sri++++kldi+e+r +qd+r++    ++++++rv+++P+++ge++v+
  EHT97911.1  74 AILSQAI--KERASDVHIEPFGQvIAVRFRIDG-VLQKMLEPERRLASMLVSRIKVMSKLDIAEKRTPQDGRISlrlgHQAIDVRVSVIPCSHGERVVM 169
                 5778899..************************.*******************************************99******************** PP

       T2SSE  96 R..kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtfadll 192
                 R  +k++  l+l++lg++e l +++  + +++   +g++lv+G+TgsGK+t+lya+++ +n  +++i+t+EDpvE++++g+ q+q+n+k +++tfa++l
  EHT97911.1 170 RllDKNVVPLSLSHLGMSEVLCNRVMTLANRP---NGIFLVTGPTGSGKSTTLYAVISALNRAERNIMTIEDPVEYDIAGISQTQVNPK-VEMTFANGL 264
                 ********************************...******************************************************.********* PP

       T2SSE 193 raaLRlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgaeveaaelkssilavvdivvrlvrk 272
                 ra+LR++PD+i++GEiRd+et++i ++A+ TGH++ l+TlH+n+ +ga++rL+++g  ve++ l+ s+  v  +++rlvr 
  EHT97911.1 265 RAILRQDPDVILIGEIRDRETAQIaVQASLTGHMV-LATLHTNTSVGAITRLQDMG--VEPFLLSGSLGGV--LAQRLVRL 340
                 ***********************************.********************..*************..*****995 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.8e-08   4.1e-05      19      81 ..     202     262 ..     196     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.8e-08
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfen 81 
                 +g++l+tGp+G+GK+T l A+  aL    ++  +   ++ ++ d++  s+++v++ ve+tf n
  EHT97911.1 202 NGIFLVTGPTGSGKSTTLYAVISALNRAERNIMT--IEDPVEYDIAGISQTQVNPKVEMTFAN 262
                 69***********************985444444..456777777766667999999999855 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.4e-07   0.00012      19      46 ..     199     226 ..     191     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.4e-07
      AAA_29  19 idlkgatlltGpsGsGKSTllDAiqalL 46 
                  +++g++l+tGp+GsGKST l A++  L
  EHT97911.1 199 NRPNGIFLVTGPTGSGKSTTLYAVISAL 226
                 56789****************9998776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.4e-06    0.0021       4      60 ..     201     267 ..     198     280 .. 0.72
   2 ?    1.0   0.0      0.55   4.7e+02     106     137 .]     406     441 ..     336     441 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..........erpevvfvtlpsstsskdllrel 60 
                   gi +vtG++G+GK+t+l  + + l++++   +          ++ ++  v+++++++ ++ lr++
  EHT97911.1 201 PNGIFLVTGPTGSGKSTTLYAVISALNRAERNIMtiedpveydiAGISQTQVNPKVEMTFANGLRAI 267
                 57999*******************9976544333666666666655555555555555555555555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.55
      AAA_22 106 eealeeLrsllnl....srkgvqliLvGtpelrkll 137
                 + +  eL+ l+++    + +g++ iLvG ++++++l
  EHT97911.1 406 KVNEVELVALSDNfmslRMDGFAKILVGATSVEEVL 441
                 444445677777789999999*******99999876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.7   5.7e+03      67      88 ..      66      86 ..      30     126 .. 0.59
   2 !   19.2   0.0   1.5e-06    0.0013      19     123 ..     196     341 ..     188     370 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.7
      AAA_16 67 ipysalaqalareellrqllde 88
                +p + l++a+   + +++ +++
  EHT97911.1 66 APIVRLINAILS-QAIKERASD 86
                444444444422.333333333 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.5e-06
      AAA_16  19 vrsgrp.elvllsGesGvGKsslvrellralekdg.giflrgkcdql......esaipy....sa.laqalareellrqlldeaesaeleawrekleea 104
                 + ++rp ++ l++G+ G+GKs+ + ++  al++++  i + ++ +++      +  +       + +a+ l r  +lrq  d     + ++ r++ +++
  EHT97911.1 196 TLANRPnGIFLVTGPTGSGKSTTLYAVISALNRAErNIMTIEDPVEYdiagisQ--TQVnpkvEMtFANGL-R-AILRQDPDV---ILIGEIRDRETAQ 287
                 55778889****************999999999943444444444442333220..222111223344444.3.444444444...3344444444333 PP

      AAA_16 105 la...................................avpelagaeasrllell 123
                 +a                                    +++l g +a+rl +ll
  EHT97911.1 288 IAvqasltghmvlatlhtntsvgaitrlqdmgvepflLSGSLGGVLAQRLVRLL 341
                 333333446666666666666665555555544444444444444444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.1e-06    0.0035      12      50 ..     196     234 ..     192     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.1e-06
      AAA_30  12 alltsgdrvavltGpAGtGKttalkalreaweaaggrvi 50 
                 +l++ ++ + ++tGp G+GK+t+l a+  a+++a+++++
  EHT97911.1 196 TLANRPNGIFLVTGPTGSGKSTTLYAVISALNRAERNIM 234
                 678888999******************999999974443 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00016      0.14       2      28 ..     205     231 ..     204     237 .. 0.87
   2 ?    3.0   0.0       0.1        86      81     144 ..     256     315 ..     243     326 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                 EEEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgv 28 
                 +++TGp G+GK+T +  v+++l++ + 
  EHT97911.1 205 FLVTGPTGSGKSTTLYAVISALNRAER 231
                 579******************987765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHH CS
    NTPase_1  81 feelalealrkal.seadviviDEiGkmElkskkfkeaveevLksekpvlavihrrkdlalveei 144
                 +e  +++ lr  l +++dvi+i Ei   E      + av+  L+ + +vla++h +++   + ++
  EHT97911.1 256 VEMTFANGLRAILrQDPDVILIGEIRDRETA----QIAVQASLTGH-MVLATLHTNTSVGAITRL 315
                 455555555554458999****999766654....45566666544.588888888665555554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-05     0.011       2      72 ..     206     285 ..     205     324 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-05
                 EEESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS....STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHH CS
         AAA   2 llyGppGtGKTllakavakelg...vefleisgsellsk....yvgesekkirelfkeakeka.......kpsilfiDEidalak 72 
                 l++Gp G GK+++  av++ l+   +++++i+ +    +     + + + k++++f++            +p +++i Ei    +
  EHT97911.1 206 LVTGPTGSGKSTTLYAVISALNraeRNIMTIEDPVEY-DiagiSQTQVNPKVEMTFAN----GlrailrqDPDVILIGEIRDRET 285
                 899*****************97444444444444333.31222244444455555544....2223346679*****99965544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05     0.012      10      65 ..     201     260 ..     193     315 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlp 65 
                 ++ +  ++G++G+GKSt l +++  l+ +e +i   ++++++    ++ ++++ ++++ +
  EHT97911.1 201 PNGIFLVTGPTGSGKSTTLYAVISALNRAERNIMTIEDPVEYdiagISQTQVNPKVEMTF 260
                 56677899********98887777777777777554566666455555555555555544 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-05     0.012      37      64 ..     194     221 ..     187     243 .. 0.86
   2 ?   -3.4   0.0       8.8   7.6e+03      84     119 ..     401     437 ..     395     450 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
       Rad17  37 advLesrkkriLLisGPsGCgkstvvkv 64 
                  ++L +r++ i L++GP+G gkst++  
  EHT97911.1 194 VMTLANRPNGIFLVTGPTGSGKSTTLYA 221
                 57899*******************9864 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.8
       Rad17  84 epdnqksdfkgltekesrflsq.iesfkeleLkdaky 119
                 +   qk +   l+   ++f+s+ ++ f  +++ ++  
  EHT97911.1 401 SMVHQKVNEVELVALSDNFMSLrMDGFAKILVGATSV 437
                 5555555556666677777774477777775555554 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05     0.013      11      43 ..     196     250 ..     191     320 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
      AAA_11  11 ksalseseitliqGPPGtgKTktivellsqll......................s 43 
                 + a + ++i+l+ GP G+gK++t+ +++s+l+                      +
  EHT97911.1 196 TLANRPNGIFLVTGPTGSGKSTTLYAVISALNraernimtiedpveydiagisqT 250
                 556677789**********************866555555555555444444440 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-05     0.012      12      68 ..     195     250 ..     190     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
    ATPase_2  12 eeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldef 68 
                  ++++r pn i +++Gp gsGK++ l  +i+ l+  + +++ + +  e++i+ ++++
  EHT97911.1 195 MTLANR-PNGIFLVTGPTGSGKSTTLYAVISALNRAERNIMTIEDPVEYDIAGISQT 250
                 555565.9************************9988888887777777777777776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.015       3      84 ..     203     291 ..     201     339 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla...dpe.......kllelileklkeekktylflDEiqevpewekalk 84 
                  i ++tG+  +GK+t l+ +i+ l   + +   ++++d+ ++++a   +++       ++ + +++ l+ ++  ++++ Ei   ++++ a++
  EHT97911.1 203 GIFLVTGPTGSGKSTTLYAVISALN--RAERNIMTIEDPVEYDIAgisQTQvnpkvemTFANGLRAILR-QDPDVILIGEIRDRETAQIAVQ 291
                 6899*****************8888..444444455555443333211221223233333344444333.4788999999988877766665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.2e-05     0.053       8      38 ..     200     230 ..     194     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelg 38 
                  +++++lvt++ G+GK+++l ++++ l++++
  EHT97911.1 200 RPNGIFLVTGPTGSGKSTTLYAVISALNRAE 230
                 578899*******************999887 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.8e-05     0.058      39      63 ..     201     226 ..     173     230 .. 0.74
   2 ?   -2.8   0.0       3.7   3.2e+03     192     207 ..     410     425 ..     394     447 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.8e-05
                   -..SEEEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE  39 a.shllvaGatgsGKStalntLilSl 63 
                   + +  lv G tgsGKSt+l + i +l
    EHT97911.1 201 PnGIFLVTGPTGSGKSTTLYAVISAL 226
                   233579**************999765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.7
                   -EEEEEEC-HHHHHHH CS
  FtsK_SpoIIIE 192 pslvvivderieLrla 207
                     lv++ d++  Lr++
    EHT97911.1 410 VELVALSDNFMSLRMD 425
                   3344444444444443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.2e-05      0.07       2     101 ..     205     307 ..     204     348 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +l+ Gp+G+gKs+    + +alnr    ++  +d  e d+ g  +++ n + +++     ra+    +++++++E+   e++ +++  sl  +  l + 
  EHT97911.1 205 FLVTGPTGSGKSTTLYAVISALNRAERNIMTIEDPVEYDIAGISQTQvNPKVEMTFANGLRAILrqDPDVILIGEIRDRETAQIAVQASLTGHMVLATL 303
                 6889******************7766666666777778899988865544444443333334437899********98777777777777666655555 PP

                 -SSS CS
       AAA_5  98 egge 101
                   ++
  EHT97911.1 304 HTNT 307
                 5554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.8e-05     0.058      24      67 ..     193     236 ..     186     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.8e-05
       AAA_7  24 yllelllknkkpvllvGptGtGKtviikdllkkldkekylslti 67 
                  +++l  + +  +l++GptG+GK++++  ++++l++ + +++ti
  EHT97911.1 193 RVMTLANRPNGIFLVTGPTGSGKSTTLYAVISALNRAERNIMTI 236
                 5666666677779*********************9888777766 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.14       3      34 ..     205     238 ..     203     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                 EEEEESTTCCHHHHHHHHH..CT--SS-EEEEES CS
        cobW   3 tvltGflGsGKTtLlnhll..enraglklavivN 34 
                 +++tG+ GsGK+t l +++   nra++++  i+ 
  EHT97911.1 205 FLVTGPTGSGKSTTLYAVIsaLNRAERNIMTIED 238
                 689****************887888888877765 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00038      0.32      16      47 ..     192     223 ..     178     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00038
      AAA_27  16 drsldfsaeeadlhliyGpNEAGKstalrAis 47 
                 +r +++ +  +++ l+ Gp  +GKst+l A+ 
  EHT97911.1 192 NRVMTLANRPNGIFLVTGPTGSGKSTTLYAVI 223
                 688999999*******************9985 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00048      0.41      25      53 ..     203     231 ..     174     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00048
                 SEEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgk 53 
                   +l+  +TG+GK+ +++++i +l ++++
  EHT97911.1 203 GIFLVTGPTGSGKSTTLYAVISALNRAER 231
                 3567999****************998754 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.33       2      36 ..     205     238 ..     204     286 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdel 36 
                  +++Gp gsGKS+ L+a   +   +++ + +t+e+
  EHT97911.1 205 FLVTGPTGSGKSTTLYAVISALN-RAERNIMTIED 238
                 689**************965544.33333334443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3045.95
//
Query:       EHT97912.1  [L=399]
Description: general secretion pathway protein F [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-50  167.8  19.0    8.8e-29  100.0   2.8    2.6  3  T2SSF     Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.52   9.3e+03      69      96 ..       7      34 ..       4      39 .. 0.71
   2 !  100.0   2.8   4.9e-33   8.8e-29       2     125 .]      66     188 ..      65     188 .. 0.99
   3 !   76.9   4.6     7e-26   1.3e-21       3     123 ..     270     388 ..     268     390 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.52
                HHHHHHT-HHHHHHHHHHHHHHHHHHHH CS
       T2SSF 69 rageeggnLaevLerlaeyleeerelrr 96
                ++  +g+ +  +Le+ +e + +++ +++
  EHT97912.1  7 ASDAQGQEIRGILEANSESHLRDLLREK 34
                5667788888888888887777666555 PP

  == domain 2  score: 100.0 bits;  conditional E-value: 4.9e-33
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrklla 100
                 +rqlat++++ +pl+eaL+++a+++e +++a +++++++ + +G s+++al ++p+  f ++++++++age++g L evL rla+y+e+++ +++kl+ 
  EHT97912.1  66 TRQLATMVASSMPLDEALHAVAHQSEKPAVAHVVQQLREMVVSGLSFEQALLSFPH-IFERFYCAMVAAGEASGYLNEVLLRLAQYIEKRQIMKNKLAQ 163
                 79*****************************************************9.99**************************************** PP

                 HHHTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 101 allepllllvvallvllillaillp 125
                  ll+p++l +v++ v+ ill+ ++p
  EHT97912.1 164 VLLYPAVLTLVTIGVVTILLTSVVP 188
                 *********************9998 PP

  == domain 3  score: 76.9 bits;  conditional E-value: 7e-26
                 HHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   3 rqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkllaa 101
                  +l++l+++ vpl+++++++a++  n   +++l ++++++ +G+sl++al+ t    f++++  +i+age++g L ++Le++a  + e +++r  l + 
  EHT97912.1 270 KTLSILTASAVPLLDSMRIAARVLANSYARQQLTDACEQVYEGKSLHQALSATR--LFSPMMNHMIAAGERSGELNQMLEHAAALQDEILNHRLTLSLG 366
                 79*************************************************987..89***************************************** PP

                 HHTTXXXXXXXXXXXXXXXXXX CS
       T2SSF 102 llepllllvvallvllillail 123
                 ++e  l++v+a++vl+i+++il
  EHT97912.1 367 IFEQSLIIVMASAVLFIIMSIL 388
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2922.77
//
Query:       EHT97913.1  [L=147]
Description: pseudopilin, cryptic, general secretion pathway [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-39  133.4   0.7    3.6e-39  133.2   0.7    1.1  1  T2SSG     Type II secretion system (T2SS), protein G
    3.8e-09   35.7   3.9    5.3e-09   35.3   3.9    1.2  1  N_methyl  Prokaryotic N-terminal methylation motif
  ------ inclusion threshold ------
      0.032   15.1   0.0      0.047   14.6   0.0    1.3  1  ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence recep


Domain annotation for each model (and alignments):
>> T2SSG  Type II secretion system (T2SS), protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.7   6.1e-43   3.6e-39       1     108 []      36     142 ..      36     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 6.1e-43
                 XX--STTHHHHHHHHHHHHHHHHHHHHHHHHTSS---TTHHHHHHHS--SS-..SS--.STTT-.-S----STT---EEE---SSSS-EEEE--TTS-- CS
       T2SSG   1 kvlgqldkakvkkakaqikslekaldlYkldvgryPtteqgLeaLvekpsge..pknw.egpYlkkklpkDpWgnpyvyrspgehgefdllslGadgqe 96 
                 +++g++ ka+++kaka+i++le++l++Y+ld++ryPtteqgL+aLv+kp +e  p+++ +g+Y+ k+lpkDpWg++y++++pg+hg++d++s+Gadg+e
  EHT97913.1  36 NIMGSKAKADQQKAKADISMLESSLEMYHLDNNRYPTTEQGLQALVKKPVDEplPAHYdDGGYI-KHLPKDPWGHDYQLLNPGKHGSIDVYSIGADGKE 133
                 699*************************************************999*********.********************************** PP

                 -SSSSSS-EEE- CS
       T2SSG  97 ggegedadignw 108
                 ++e+   dignw
  EHT97913.1 134 DTED---DIGNW 142
                 ***9...99998 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   3.9   8.8e-13   5.3e-09       1      26 [.       8      33 ..       8      34 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 8.8e-13
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaa 26
                +r q+GFTL+E++v+++I++++++++
  EHT97913.1  8 RRGQKGFTLLEVMVVIVIIGLMAMLV 33
                689********************987 PP

>> ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.9e-06     0.047       8      41 ..      42      76 ..      35      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.9e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHCTS-...S.G CS
    ComP_DUS  8 rkarRaeakaaLleaaqalEryytqngtY.asesa 41
                +ka  ++aka++ ++ + lE y+ +n++Y ++e+ 
  EHT97913.1 42 AKADQQKAKADISMLESSLEMYHLDNNRYpTTEQG 76
                689999***********************422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1129.71
//
Query:       EHT97914.1  [L=131]
Description: general secretion pathway protein I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-16   59.8   0.2    2.9e-16   59.4   0.2    1.2  1  T2SSI     Type II secretion system (T2SS), protein I
     0.0041   16.6   1.8     0.0068   15.9   1.8    1.4  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> T2SSI  Type II secretion system (T2SS), protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.2   3.3e-20   2.9e-16       1      79 [.      51     128 ..      51     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.3e-20
                 HHHHHHHHHHHHHHHHHHHCSTS.TTSEEEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH-SEEEEEEE CS
       T2SSI   1 LeertlAgwvAeNrlaelrleeqwpaigesegevemagrrWywrveveatadpglrrvevsVaadkeeerplaslrtfv 79 
                 L+ +++A wvA+N+l++l+l++ +  +++ +ge  m+g  W+wr + ++++ +g   +e++V++++ ++++l+s+ t+v
  EHT97914.1  51 LKATLYADWVADNQLVQLHLAPGPRTREWVQGENLMGGISWRWRYRYADSSVRGTDTLEIEVFRPG-ARSSLVSVNTLV 128
                 667899*********************************************************777.********9987 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.8   7.6e-07    0.0068       4      26 ..      15      37 ..      12      38 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.6e-07
    N_methyl  4 qrGFTLiElLvalaIlaillaaa 26
                qrG  L+E+Lval+Ila+  +a+
  EHT97914.1 15 QRGIVLLEILVALVILAVTGSAV 37
                666669************88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 931.22
//
Query:       EHT97915.1  [L=183]
Description: general secretion pathway protein J [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-17   63.6   1.6    3.1e-17   63.1   1.6    1.2  1  T2SSJ           Type II secretion system (T2SS), protein J
    2.6e-09   36.2   0.3    4.7e-09   35.4   0.3    1.4  1  N_methyl        Prokaryotic N-terminal methylation motif
  ------ inclusion threshold ------
      0.064   12.4   0.4      0.095   11.8   0.1    1.5  2  Astro_capsid_p  Turkey astrovirus capsid protein


Domain annotation for each model (and alignments):
>> T2SSJ  Type II secretion system (T2SS), protein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   1.6   5.2e-21   3.1e-17       1     139 [.      57     177 ..      57     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 5.2e-21
                 HHHHHCTBBS--EE-TTS-EEECEEETGCCTTCEEEEEEEEEEE-TTTEECSCEEEEEEEEEETTEEEEEEECCCTTCCGCB-EEEEEESSEEEEEEEE CS
       T2SSJ   1 lerDlsqavarpvrdeygderpalagdkedseqdeLeftRaGwanpeglaprselqrVgYrleegrLeRltwpvlDrasdtepqeqvlLegveelelrf 99 
                 l+ D+s+av+r+  ++ ++  ++ +g     ++ ++++ R+  ++ +      +l++V++ l++++L+R++w     a++t+ + q+ L gv+ ++lrf
  EHT97915.1  57 LSDDFSHAVMRTRVKADATDLQVQTG-----DVSQVRLLRKQSRSAGV-----KLEQVEWYLQNNTLYRRSWLL---APGTQVINQQQLVGVSGFHLRF 142
                 689********998886666667776.....99*******86655544.....59*****************98...88999***************** PP

                 E-TTSSEESSSS-SSS-HHC--SEEEEEEEETTTEEEEEE CS
       T2SSJ 100 ldqdnqwqeeWppeaaeaaslPeaVeitlelkdlgeirrl 139
                 ++q+  wq++  + +    +lP+aVeitl +++lge++rl
  EHT97915.1 143 YQQG-LWQPQLLSGD----TLPQAVEITLAVNGLGEVQRL 177
                 ****.9999999998....9******************97 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.3   7.8e-13   4.7e-09       1      26 [.       1      26 [.       1      27 [. 0.95

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 7.8e-13
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaa 26
                m++qrGFTL+E+L  ++++ai+++ a
  EHT97915.1  1 MNRQRGFTLLEMLLGMTLIAIVSLSA 26
                89********************9987 PP

>> Astro_capsid_p  Turkey astrovirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.68   4.1e+03     155     167 ..      26      38 ..      23      44 .. 0.69
   2 ?   11.8   0.1   1.6e-05     0.095     136     168 ..      86     118 ..      48     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.68
                     -EEEEEEEEEEES CS
  Astro_capsid_p 155 kWyLltntaieeg 167
                      WyLl + +  + 
      EHT97915.1  26 AWYLLAGMSRSQQ 38 
                     7999998555444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.6e-05
                     --BEE-SS-EEEEEEE-TT-EEEEEEEEEEESS CS
  Astro_capsid_p 136 enlkirkattektvsleqgkWyLltntaieege 168
                     +   +rk+++++ v+leq +WyL  nt ++++ 
      EHT97915.1  86 QVRLLRKQSRSAGVKLEQVEWYLQNNTLYRRSW 118
                     222479********************9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1327.09
//
Query:       EHT97916.1  [L=299]
Description: general secretion pathway protein K [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   87.2   4.0    3.6e-13   49.5   2.3    2.0  2  T2SSK     Type II secretion system (T2SS), protein K
     0.0036   17.3   0.8     0.0067   16.4   0.8    1.4  1  FtsL      Cell division protein FtsL
  ------ inclusion threshold ------
      0.083   12.9   0.0       0.18   11.8   0.0    1.5  1  MNSV_P7B  Melon necrotic spot virus P7B protein


Domain annotation for each model (and alignments):
>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   2.3   6.1e-17   3.6e-13       6     115 ..      39     149 ..      34     158 .. 0.84
   2 !   38.0   0.0     2e-13   1.2e-09     150     277 ..     158     287 ..     147     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 6.1e-17
       T2SSK   6 irrtenlrarqQaqwyalgaealarqiLredaredkkdvdhlgepWaqplaefpldggeisgrieDlqgrfNLnnLvssaa......ekdpaalqvfqr 98 
                  +++++++++ Qa+w +lgae  + + L++++  ++  +  ++  W qp ++++++gg ++  ++Dl ++fNLn L++s +      ++  +  + fq+
  EHT97916.1  39 RHSVSSAQQQLQAKWQLLGAEVAVTAELQRQLGGNG-GILPAAADWLQP-HSVRVSGGDVRYVLRDLGACFNLNWLLASVKrgqkgsQDILTPDAWFQQ 135
                 5667889999*********************94444.3999999*****.**************************8777778899988999999**** PP

       T2SSK  99 Llealgldaaeaerlad 115
                 Ll  +g  ++     ++
  EHT97916.1 136 LLGLIGAGQSLS---VQ 149
                 ****99884433...33 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2e-13
       T2SSK 150 qpladvseLrlvkgvtpelyarLrPyvtvlp...ektkiNiNta...saevLaAlveg.lslsqaqrllaaRpeagfrsvadflaasalsggsstaaak 241
                  +++d s+L +v+ + ++ ++rL+  ++v++   ++ k+N+N +   +  +L+A  ++ +++ + ++ll +Rp++g+++ +++     l+g +     +
  EHT97916.1 158 YLFRDASQLLAVAAIPQAPWQRLLGQICVVSglaDNPKLNVNGLtsdQLLLLQAALKKpVDDGRLRQLLVSRPSKGWKDQKQIPVT-LLDGLP----IA 251
                 5799*****************************99*********989999999999999********************9999888.455545....78 PP

       T2SSK 242 eqltvkSsyFelegrvrvdearvrlrsllerdedgv 277
                 + +  +S+ +el+++  v   +  lr+ l+ d++++
  EHT97916.1 252 ALFRYSSNDYELSLESAVPGGNWILRTYLHYDKQKM 287
                 999************999999999999999998776 PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   1.1e-06    0.0067      14      70 ..      10      65 ..       3      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
        FtsL 14 kvlllllllvlvsavavvlithqtRqlvselekllserdkLeeewrnLlLEestlsa 70
                + ++ll++l+++s ++v++ +  +R   +++ ++ s +++L+++w+ L  E +  ++
  EHT97916.1 10 RGMILLMVLLVISLIMVMIAS-LSRTGQTTRHSVSSAQQQLQAKWQLLGAEVAVTAE 65
                568889999999999888777.9***********************99877766665 PP

>> MNSV_P7B  Melon necrotic spot virus P7B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.18      17      43 ..      16      42 ..       2      51 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
    MNSV_P7B 17 llilfisfvlfyitslspqGntyvhhf 43
                +++l is+++ +i+sls  G t  h  
  EHT97916.1 16 MVLLVISLIMVMIASLSRTGQTTRHSV 42
                34689*****************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2129.76
//
Query:       EHT97917.1  [L=399]
Description: general secretion pathway protein L [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-18   64.8   0.2    1.5e-17   63.7   0.2    1.5  1  T2SSL           Type II secretion system (T2SS), protein L
  ------ inclusion threshold ------
      0.018   14.9   5.4      0.032   14.1   5.4    1.4  1  GspL_C          GspL periplasmic domain
      0.069   11.4   0.1        0.1   10.9   0.1    1.2  1  CDC45           CDC45-like protein
       0.31   11.3   4.2         13    6.1   0.0    3.2  3  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut


Domain annotation for each model (and alignments):
>> T2SSL  Type II secretion system (T2SS), protein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.2   3.3e-21   1.5e-17       1     227 [.      15     233 ..      15     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 3.3e-21
                 EEEEE-S-TTSEEEEEEEETTTTEEEEEEEEESGGGGGGGHHHHTTSEEEEEE-GGGSEEEEEE--TT-GGGHHHHHHHHHGGGSSSSGGGEEEEEEEE CS
       T2SSL   1 LlvRlssteeqsiewavwsvqeaevveeGqlalreglselaeypaadrvvlllPaedvllvsvslPpqalrqlrqaLpflvEdqlaqDvdqlHiavlpk 99 
                 L++Rl+ t +  + w     q  +  ++G+l  +++l+el +     + vl lPae+ +l +vs   +++r     L+ l+ ++l +D d++ +  lp 
  EHT97917.1  15 LFLRLPLTDNGPMAWWCGDPQTPHEAQSGELDCAAALNELPDSMRPLPAVLWLPAEQCVLEPVSFS-GKSRLRPAQLAQLLGESLGEDLDDFLWWCLPT 112
                 89*************99999999999***************999999*****************96.66777778899********************* PP

                 -SSEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEGGGGS---SSSEEEEEETTEEEEEECTTEEEEEEGGGHHHHHTSGGGEET-EEESS--------T CS
       T2SSL 100 eadtaavvavdrawlrrvLdslagaglrvkrllPdalaLPlpadvwavlnadeewlvRndeadglavdssvlpalladllaiaealarysvvpalreaa 198
                 +a ++ + +   awl+ vL+ ++++gl++ +llP+  aLP  +d + +  a+ +wl R+  + g+ +   ++ ++l ++   a+ l  y + p+ ++  
  EHT97917.1 113 KAARQLLLGCPAAWLNEVLSAINACGLHIVQLLPELAALP--DDDAVITFAGGRWLYRERDGLGAWLHPGWVTNILPQWRDPAQ-LTLYGPAPIAGVS- 207
                 ****************************************..99999999*****************************99996.*************. PP

                 T--EEE---S-HHHHHHHHHCT----S-- CS
       T2SSL 199 qtelaarpeeavlallaraalaakadLlq 227
                    +aa+  +   allar ++   ++Ll+
  EHT97917.1 208 ---WAAQHADCGEALLARCSADCAINLLS 233
                 ...***************99999999986 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.4   7.2e-06     0.032       7     132 ..     248     376 ..     242     395 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.2e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX---HHHHHHHHHHHHHHHTSTT-EEEEEEE CS
      GspL_C   7 WrkvaillalallvvvaerllqlyqlerqaqalraqseeiyqqlfPeekrild.lraqmrkqlrrlagkasgdallkllaalqtaleqvpelelqsldY 104
                 W   + l+a+ ++++++ +l+ + +l  qa + ++q +++y+  +P++kr         r+++r+  ++  ++ ++    ++++     ++ ++q+l +
  EHT97917.1 248 WPWTVGLAAATMVLALGATLTSALHLHLQASQDKQQISALYKHWLPQDKREDAdEVDRLRRHRRSFIQQFGNVNFFNAFCQYAQFQSLWQAPRIQKLVF 346
                 55667899****************************************99754366678888888888899999999888888888888899******* PP

                 ETT.TTCEEEEE.EESSCHHHHHHHHHHHC CS
      GspL_C 105 dgk.rgelrlql.eakdfaafeqlrakaat 132
                 d k ++ ++ +l ea++  a eq++++  +
  EHT97917.1 347 DDKsALVVEVNLsEADAKRAAEQAKQAHIA 376
                 865166777755134444555666554433 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.2e-05       0.1     390     466 ..     238     317 ..     233     361 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.2e-05
       CDC45 390 dlvyesFvrsygyraelsAaDvvealtAlLevgkgveaksekeaeesekese...eeeeeeeeeeaeeeekeeeewvknF 466
                  l ++s  r + ++  l+Aa +v al+A L+++ +++ ++++++++ ++  +    ++++e+ +e ++ ++++++ +++F
  EHT97917.1 238 SLQPRSSRRYWPWTVGLAAATMVLALGATLTSALHLHLQASQDKQQISALYKhwlPQDKREDADEVDRLRRHRRSFIQQF 317
                 6889999*************************997763333333333333225664444455555555555555555555 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0029        13       6      38 ..     112     144 ..     111     149 .. 0.92
   2 ?    0.1   0.2      0.21   9.3e+02      90     120 ..     256     286 ..     252     290 .. 0.78
   3 ?    4.4   0.1    0.0093        41      52     104 ..     337     389 ..     329     399 .] 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0029
  NAD_binding_11   6 vKlvnnlllainlaaasEalvlaekaGldpekv 38 
                     +K++ +lll++  a + E+l + +++Gl++ ++
      EHT97917.1 112 TKAARQLLLGCPAAWLNEVLSAINACGLHIVQL 144
                     7***************************98665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
  NAD_binding_11  90 aplpllalaeqlyaaaaaegggdaDhsaivr 120
                     a++++lal ++l +a++ ++++++D+++i  
      EHT97917.1 256 AATMVLALGATLTSALHLHLQASQDKQQISA 286
                     6788888889999999988888888887755 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0093
  NAD_binding_11  52 lenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpllalaeqlyaa 104
                        ++++ v++++ +   +++l   D + a e a++a++++ ++a+a+  + a
      EHT97917.1 337 QAPRIQKLVFDDKSALVVEVNLSEADAKRAAEQAKQAHIAVKFGAAAQGRITA 389
                     556778888888888899999**************************977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3055.00
//
Query:       EHT97918.1  [L=147]
Description: hypothetical protein CKS_4618 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-16   59.4   7.2    6.5e-16   58.8   7.2    1.4  1  T2SSM         Type II secretion system (T2SS), protein M
  ------ inclusion threshold ------
      0.034   13.3   0.8       0.04   13.1   0.8    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   7.2   7.2e-20   6.5e-16      49     158 ..      34     141 ..       6     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 7.2e-20
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT--EEEEEEETT.EEEEEE--B-HHHHHHHHHHHHHHS--EEEEEEEEE---- CS
       T2SSM  49 elqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqagLalarlqpqgdgsvqvwleevpfeallrWLaeleeqqgvsveeadldradep 147
                   q++++qlaw+++q + v  ++ +p s + ++++ ++v +sa++a +al+     g+ +vq++l  v+f++l+ WL++l++++g +v e++l++a ++
  EHT97918.1  34 DAQTAASQLAWMQKQQDVVNWINHKPDSVAFSRPIVDAVAQSASSAVIALQSEVSHGE-TVQITLTGVEFNRLILWLQQLQQTYGTEVLELELTPA-AA 130
                 678999****************************************************.*************************************.** PP

                 --EEEEEEEEE CS
       T2SSM 148 GlVsvrlllle 158
                 G V+v +l+l+
  EHT97918.1 131 GEVNVPRLVLG 141
                 *****999865 PP

>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8   4.4e-06      0.04      83     131 ..       8      56 ..       2     109 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-06
  BPD_transp_2  83 deliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsfls 131
                   + ++i+l++++vl+g++++ll + +++ ++ +s+ +++++ ++ ++++ 
    EHT97918.1   8 RTPLIVLGVFIVLQGVAFWLLATVSGDAQTAASQLAWMQKQQDVVNWIN 56 
                   6789***************************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1106.91
//
Query:       EHT97919.1  [L=229]
Description: leader peptidase/prepilin peptidase/N-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-22   78.8   0.4    4.9e-22   77.8   0.4    1.5  1  DiS_P_DiS      Bacterial Peptidase A24 N-terminal domain
    1.4e-19   70.4  13.2    2.3e-19   69.8  13.2    1.3  1  Peptidase_A24  Type IV leader peptidase family


Domain annotation for each model (and alignments):
>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.4   5.5e-26   4.9e-22      21      82 ..      13      74 ..       3      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 5.5e-26
   DiS_P_DiS 21 kslvkprSrCpkCghklkwleliPvlSylllrgrCraCkakislryplvElltallflllal 82
                 ++++p+S+Cp+C+ +++w+++iP++S+l+lrgrCr+C a+i  ry+l+El  +++ +l+a+
  EHT97919.1 13 LNFFWPPSHCPRCDYRVRWYDNIPMFSWLALRGRCRSCCAPIGRRYLLLELSLGMWGALCAW 74
                5899*******************************************************999 PP

>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8  13.2   2.5e-23   2.3e-19       1     107 []      86     195 ..      86     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2.5e-23
  Peptidase_A24   1 lvlltillvlsviDldtrtlpdeltlpllllgvlfaqllllglpnlaqavlgalvgalvllli.....slvdeqamGgGDvklaavlgaflgwerl 91 
                    +++ ++l+++++iD  +r+lpd lt +ll++g+l +  l    + l++av+ga++g+l l li     + +  ++mG GD+k +a+lga+lgw++l
     EHT97919.1  86 MIYGAWLMAMAWIDYLHRLLPDLLTQSLLWIGLLWH--LVDDRVLLEDAVVGAIAGYLTLALIywlgrWRYGFEVMGQGDMKCLAALGAWLGWQAL 179
                    67889******************************8..7889999*****************755555555777********************** PP

  Peptidase_A24  92 llavlvaillgavlgl 107
                    + ++l+a+l+++ l+l
     EHT97919.1 180 PSVLLLASLFTLALAL 195
                    **********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1644.62
//
Query:       EHT97920.1  [L=100]
Description: hypothetical protein CKS_4616 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-20   71.9   0.0    4.9e-20   71.7   0.0    1.0  1  T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein 


Domain annotation for each model (and alignments):
>> T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein (PulS_OutS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   2.7e-24   4.9e-20      19     105 ..       7      94 ..       2      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 2.7e-24
                     HHHHHHHHHHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--G..GG-TTHHHHHHHHHHHHHHSSS-HHHHHHHHHHHTHHHH CS
  T2SS_PulS_OutS  19 aneqieqlsslvaaikYLkqkCnrsdLpddatilkvalkvakqrgWdt..deyqslpqrserlYqgLlkdstpkekqCsslnktltpfi 105
                       eq+eql+s+++++ YLk+ CnrsdL++++ i + ++ +a+++gWd    ++  l+ r e  Y  L+ +     ++C +ln++l  ++
      EHT97920.1   7 PSEQLEQLASTISGATYLKNYCNRSDLGENKDIFNAVVSLAQRKGWDMahLDQSQLSERREVFYGNLVSN-RDITENCNQLNRALAGIL 94 
                     579*********************************************4435678999************.556779*******98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 774.81
//
Query:       EHT97921.1  [L=43]
Description: IS1327 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0013   19.0   0.0     0.0015   18.8   0.0    1.1  1  DDE_Tnp_IS240  DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.1e-08    0.0015     113     139 ..       1      27 [.       1      28 [. 0.95

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.1e-08
  DDE_Tnp_IS240 113 trgfkslksaaktlagfeavknlrkgh 139
                    + g+ks+++a+++lag+e v+++rkg+
     EHT97921.1   1 MTGLKSFRRAQTVLAGIELVHMIRKGQ 27 
                    689**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 347.35
//
Query:       EHT97922.1  [L=99]
Description: hypothetical protein CKS_4614 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 795.80
//
Query:       EHT97923.1  [L=41]
Description: hypothetical protein CKS_4613 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 315.11
//
Query:       EHT97924.1  [L=143]
Description: ParA family chromosome partitioning protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-23   83.9   0.2    3.2e-16   59.7   0.1    2.0  2  AAA_31       AAA domain
    1.1e-15   57.8   0.0    1.2e-15   57.6   0.0    1.1  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.7e-10   40.1   0.3    1.6e-09   37.6   0.1    1.9  2  ParA         NUBPL iron-transfer P-loop NTPase
    1.1e-08   34.7   0.9    3.5e-05   23.2   0.1    2.2  2  MipZ         ATPase MipZ
    6.2e-08   32.2   0.2    1.2e-07   31.2   0.0    1.5  2  ArsA_ATPase  Anion-transporting ATPase
    8.2e-06   25.5   0.2     0.0034   16.9   0.3    2.1  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    6.5e-05   22.5   0.0    0.00014   21.4   0.0    1.4  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    0.00013   21.3   0.0    0.00017   21.0   0.0    1.3  1  VirC1        VirC1 protein
      0.008   16.0   0.0      0.017   14.9   0.0    1.5  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
  ------ inclusion threshold ------
       0.11   12.1   0.2       0.13   11.8   0.2    1.4  1  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.1   1.8e-19   3.2e-16       3      44 ..       2      43 ..       1      56 [. 0.93
   2 !   22.8   0.0     4e-08   7.1e-05     105     173 ..      64     131 ..      51     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 1.8e-19
      AAA_31  3 vIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQana 44
                +I++ nqKGGvGKTT svn+aa la  g +vLl D+DpQ++a
  EHT97924.1  2 IISVLNQKGGVGKTTLSVNIAARLAADGARVLLLDADPQGSA 43
                8**************************************987 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 4e-08
      AAA_31 105 eilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkklnp 173
                  +l++ + k+ ++Y  i+iD pP +  l+++a++a+d v  p   + +a + + +l++  +  k++l++
  EHT97924.1  64 ATLHKDIGKFTQDYNHIVIDGPPRVTDLARSAIMAADLV-QPSPYDVWAAQEVVNLISETRIYKENLKS 131
                 56889999*****************************75.46666667777777777776666666665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0     7e-19   1.2e-15       1      79 [.       3     134 ..       3     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 7e-19
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i++ ++kGGvGKTtl++n+a+ la +g rVll+DaDpq+++l  +   e++                                                
  EHT97924.1   3 ISVLNQKGGVGKTTLSVNIAARLAADGARVLLLDADPQGSALDWAAAREGESVFpvlglpratlhkdigkftqdynhividgpprvtdlarsaimaadl 101
                 7899*************************************9964444443333677888888888888888888888888888888777777776666 PP

                 .........CCHCCCHHHHHHCHCHHHH..EEEE CS
                 .........xxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........dlkrllellealgkkkalllkiagv 79 
                           ++ +++l+++ ++ k  +lk a+ 
  EHT97924.1 102 vqpspydvwAAQEVVNLISETRIYK-ENLKSAFA 134
                 6666666666666666666666553.33555555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   8.8e-13   1.6e-09       5      46 ..       2      43 ..       1      56 [. 0.92
   2 ?    0.8   0.0      0.15   2.7e+02     112     128 ..      77      93 ..      65     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.8e-13
        ParA  5 viavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGps 46
                +i vl  KGGVGK+t++vn+A+ La+ g++v llDaD  G  
  EHT97924.1  2 IISVLNQKGGVGKTTLSVNIAARLAADGARVLLLDADPQGSA 43
                799**********************************98876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
        ParA 112 lDyLiiDlPPGtgDeql 128
                  + ++iD PP  +D + 
  EHT97924.1  77 YNHIVIDGPPRVTDLAR 93 
                 56799*****9999765 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1     2e-08   3.5e-05       2      39 ..       2      39 ..       1      55 [. 0.90
   2 !   10.5   0.0   0.00015      0.27      88     125 ..      65     102 ..      60     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2e-08
                EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--T CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldl 39
                +i + n+kGG Gk+t +v +a  L++ Garv  +d d 
  EHT97924.1  2 IISVLNQKGGVGKTTLSVNIAARLAADGARVLLLDADP 39
                68899******************************996 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEE CS
        MipZ  88 eleelvadleaeldfividtPGsdsalsrlahsladtl 125
                 +l++ + +++++++ ivid P + + l+r+a   ad +
  EHT97924.1  65 TLHKDIGKFTQDYNHIVIDGPPRVTDLARSAIMAADLV 102
                 5777788999**********************999965 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   6.7e-11   1.2e-07       6      45 ..       6      45 ..       1      56 [. 0.88
   2 ?   -2.2   0.0         1   1.8e+03     122     134 ..      74      86 ..      64      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 6.7e-11
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHH CS
  ArsA_ATPase  6 vgGKGGVGKttvsaatavklsekgkkvllistDPAhslsD 45
                 +  KGGVGKtt+s  +a++l+  g +vll+  DP  s  D
   EHT97924.1  6 LNQKGGVGKTTLSVNIAARLAADGARVLLLDADPQGSALD 45
                 567*******************************877555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                  CSSSSEEEEESBS CS
  ArsA_ATPase 122 eeeydvvvlDtaP 134
                  +++y+ +v+D +P
   EHT97924.1  74 TQDYNHIVIDGPP 86 
                  689999***9998 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   1.9e-06    0.0034       9      41 ..       8      40 ..       1      47 [. 0.89
   2 !    6.7   0.0    0.0025       4.5     104     140 ..      65     101 ..      49     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
    CBP_BcsQ  9 vRGGvGttsllaaLawalhelgesvlviDlspd 41
                 +GGvG+t+l++ +a  l + g +vl++D+ p+
  EHT97924.1  8 QKGGVGKTTLSVNIAARLAADGARVLLLDADPQ 40
                58***************************9886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0025
    CBP_BcsQ 104 allaalkelkeqyrwillDlpagasaltrellaladl 140
                 +l + + +++++y+ i++D p   ++l+r+++  adl
  EHT97924.1  65 TLHKDIGKFTQDYNHIVIDGPPRVTDLARSAIMAADL 101
                 5677888999**********************99996 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.6e-08   0.00014       7      40 ..       8      41 ..       2      50 .. 0.91
   2 ?   -2.5   0.0       1.5   2.7e+03     207     222 ..      84      99 ..      67     127 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.6e-08
   Fer4_NifH  7 GkGGiGksttsqnlsaalaemgkkvlivGCDPka 40
                 kGG+Gk+t s n++a la++g +vl++  DP+ 
  EHT97924.1  8 QKGGVGKTTLSVNIAARLAADGARVLLLDADPQG 41
                69******************************75 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
   Fer4_NifH 207 vvPrdeivrkaelrkk 222
                   Pr  ++ ++ +   
  EHT97924.1  84 GPPRVTDLARSAIMAA 99 
                 4444444444443332 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.4e-08   0.00017       4      48 ..       3      47 ..       1      84 [. 0.86

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 9.4e-08
       VirC1  4 itfcslkGGaGkttalmglcsalasdgkrvalfeadenrPltkwk 48
                i++   kGG Gktt  + + + la+dg rv l++ad       w 
  EHT97924.1  3 ISVLNQKGGVGKTTLSVNIAARLAADGARVLLLDADPQGSALDWA 47
                667788******************************887777775 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.3e-06     0.017       4      33 ..      11      40 ..       9      45 .. 0.92
   2 ?   -2.7   0.0       2.3   4.2e+03      26      45 ..      80      99 ..      73     128 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.3e-06
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDvG 33
                 +GK+Tl+ +++ +++  g +++++D+D+ 
  EHT97924.1 11 GVGKTTLSVNIAARLAADGARVLLLDADPQ 40
                59**************************96 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
      CLP1_P 26 vyvDlDvGqseispPgtisl 45
                +++D  +   +++  +++++
  EHT97924.1 80 IVIDGPPRVTDLARSAIMAA 99
                33333333333333333333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   7.5e-05      0.13      41      65 ..       9      34 ..       2     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.5e-05
      AAA_25 41 apgtGKttlaldlalava.tGkpwlg 65
                 +g+GKttl +++a+ +a  G  +l 
  EHT97924.1  9 KGGVGKTTLSVNIAARLAaDGARVLL 34
                79****************66654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1105.41
//
Query:       EHT97925.1  [L=360]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.6e-110  367.5   0.0   7.4e-110  367.4   0.0    1.0  1  Transposase_mut  Transposase, Mutator family
    7.9e-07   29.4   0.0    2.8e-06   27.6   0.0    1.9  2  MULE             MULE transposase domain
     0.0029   17.4   0.0     0.0061   16.4   0.0    1.5  1  DUF433           Protein of unknown function (DUF433)
  ------ inclusion threshold ------
      0.032   14.5   0.0        2.2    8.5   0.0    2.6  2  DDE_Tnp_IS240    DDE domain
      0.082   12.7   0.2       0.56   10.1   0.0    2.5  3  HTH_23           Homeodomain-like domain
       0.14   11.9   0.0       0.32   10.8   0.0    1.6  1  HTH_38           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Transposase_mut  Transposase, Mutator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.4   0.0  2.5e-113  7.4e-110      42     379 ..       1     335 [.       1     337 [. 0.98

  Alignments for each domain:
  == domain 1  score: 367.4 bits;  conditional E-value: 2.5e-113
  Transposase_mut  42 ldealgaeryerseersnqRnGsrerklsTragtlelriPrdRsGsFspallerykRrekaleavvielyvkGvstrkveklveelygeksvSk 135
                      ++++lg+++ +  ++  n RnG+ +++++T  g lelr PrdR+GsF+p+l+++ + r + +++ +++ly+kG++tr++++ ++ely+ ++vS+
       EHT97925.1   1 MTHHLGYDKNQPRPAT-NARNGYTQKTVITGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYD-ADVSP 92 
                      6789999988776654.69*********************************************************************.99*** PP

  Transposase_mut 136 sevSaitkeldeaveafreRsLeekeypllflDalylkvReegrvvskavliaigvdadGsreiLglevadsEsekfWlavlesLknrGlkgve 229
                      + vS++t+++ e+v+++++R+L+++ yp+++lD ++lkvR++ rv +k+v+ a+g++ +G++e+Lg+++a++E++kfWl+vl++LknrGl+++ 
       EHT97925.1  93 ALVSKVTDAVMEQVTEWQNRPLDAV-YPIVYLDCIVLKVRQDSRVINKSVFLALGINIEGQKELLGMWLAENEGAKFWLNVLTELKNRGLNDML 185
                      *************************.******************************************************************** PP

  Transposase_mut 230 lvvsDahkGLvkaisavfpeaavQrCrvHllrnllakvpkkkadkvaealksiykaedaeearealeefleklgkkypkvaelldeaaedvlaf 323
                      ++ +D++kG+++ai+ v+pea  Q C+vH++rn+l++v+ k+ + v+++lk+iy+a+  e++++ale+f+ ++ ++yp++ ++++ +++++ +f
       EHT97925.1 186 IACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEEAGQQALEAFASAWDSRYPQISRSWQANWTNLATF 279
                      ********************************************************************************************** PP

  Transposase_mut 324 lafpeqirrkikstNllErLNkeirRrtrvvgiFPneesilrlvgavlaeahdewk 379
                      +a+p++ir+ i++tN++E+LN+ ir + +++ +F  ++s+ ++v + ++ a ++w+
       EHT97925.1 280 FAYPADIRKVIYTTNAIESLNSVIRHAIKKRNVFSTDDSVKKVVWLAIQAASQKWT 335
                      **********************************************9999999996 PP

>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   9.5e-10   2.8e-06      17      96 .]     141     218 ..     135     218 .. 0.92
   2 ?   -2.7   0.0       2.7   8.1e+03      33      57 ..     322     346 ..     312     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9.5e-10
        MULE  17 lltvvgvddngqlvplafalveseneesyewllqelleevsgqrspkviitDkekallnaleevfpeakhrlClfHiakn 96 
                  + ++g++ +gq  +l+++l e+e  + +  +l+el+++  +     +   D  k++  a+++v+pea+ +lC+ H+ +n
  EHT97925.1 141 VFLALGINIEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN--DMLIACVDGLKGFPDAINTVYPEARIQLCIVHMVRN 218
                 6899*********************************96554..7788889*************************9876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
        MULE  33 afalveseneesyewllqelleevs 57 
                 +++l  +  ++ ++  l++++ ++s
  EHT97925.1 322 VVWLAIQAASQKWTMPLKDWRMAMS 346
                 5566667778889999999988876 PP

>> DUF433  Protein of unknown function (DUF433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0061      23      53 ..      64      94 ..      55      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
                HHHHHHHTT--HHHHHHHH.TS-HHHHHHHH CS
      DUF433 23 tilellaaGesieeiledyPdLtlediqaal 53
                +il+l+a+G++  ei++++ +L  +d+  al
  EHT97925.1 64 QILSLYAKGMTTREIAAAFKELYDADVSPAL 94
                69*************************9887 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   6.6e+03      72     106 ..      80     114 ..      75     119 .. 0.74
   2 ?    8.5   0.0   0.00075       2.2      88     126 ..     285     323 ..     141     333 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.2
  DDE_Tnp_IS240  72 salkelkregelfdevshvqvkylnnriEsdhrtl 106
                    +a+kel +     + vs+v+  ++ +  E ++r+l
     EHT97925.1  80 AAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPL 114
                    67777777666667788888888888888888776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00075
  DDE_Tnp_IS240  88 shvqvkylnnriEsdhrtlKkrlrptrgfkslksaaktl 126
                      ++v y  n iEs ++ +++ +++ + f + +s++k++
     EHT97925.1 285 DIRKVIYTTNAIESLNSVIRHAIKKRNVFSTDDSVKKVV 323
                    445666888999999999999999999999999998876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019      0.56       9      27 ..      64      82 ..      64      83 .. 0.93
   2 ?   -1.4   0.0      0.76   2.3e+03       2      16 ..     204     218 ..     203     223 .. 0.82
   3 ?   -3.1   0.0       2.5   7.6e+03       8      20 ..     324     336 ..     321     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
      HTH_23  9 rillllaeGlsvreIAreL 27
                +il l+a+G+++reIA+++
  EHT97925.1 64 QILSLYAKGMTTREIAAAF 82
                79**************987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.76
      HTH_23   2 asereRlrillllae 16 
                 +++r+ l+i++++++
  EHT97925.1 204 PEARIQLCIVHMVRN 218
                 67889999****985 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.5
      HTH_23   8 lrillllaeGlsv 20 
                 +++++++ ++++ 
  EHT97925.1 324 WLAIQAASQKWTM 336
                 6789999999986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.32      11      28 ..      63      80 ..      63      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
      HTH_38 11 eeIerllaeGlslreIAr 28
                ++I  l+a+G++ reIA 
  EHT97925.1 63 NQILSLYAKGMTTREIAA 80
                6899*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2441.45
//
Query:       EHT97926.1  [L=45]
Description: hypothetical protein CKS_4610 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 345.74
//
Query:       EHT97927.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97927.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97927.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97927.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97927.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97927.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97927.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97927.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97927.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97927.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97927.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97927.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97927.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97927.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97927.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97927.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97927.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97927.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2358.72
//
Query:       EHT97928.1  [L=346]
Description: ISSod13 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-20   73.4   0.0    3.1e-20   72.5   0.0    1.5  1  rve       Integrase core domain
    1.2e-18   66.9   0.1    2.2e-18   66.0   0.1    1.5  1  HTH_29    Winged helix-turn helix
    9.1e-11   41.4   0.0    2.3e-10   40.1   0.0    1.8  1  rve_3     Integrase core domain
    3.9e-06   26.9   0.0    9.6e-06   25.6   0.0    1.7  1  HTH_28    Helix-turn-helix domain
    5.6e-05   22.8   0.2    0.00026   20.7   0.0    2.1  2  HTH_23    Homeodomain-like domain
     0.0053   16.8   0.0      0.015   15.4   0.0    1.7  1  HTH_7     Helix-turn-helix domain of resolvase
     0.0096   15.7   0.0      0.025   14.3   0.0    1.7  1  HTH_8     Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.012   16.2   0.1      0.052   14.2   0.0    2.1  2  HTH_32    Homeodomain-like domain
      0.018   15.2   0.0      0.042   14.0   0.0    1.6  1  rve_2     Integrase core domain
       0.11   12.5   0.0       0.39   10.8   0.0    1.9  2  HTH_22    HTH domain
       0.22   11.8   1.0       0.58   10.4   0.0    2.3  3  HTH_17    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.9e-23   3.1e-20       2     118 ..     161     283 ..     160     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.9e-23
         rve   2 trpgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve...pervlsDngseytsk....afrefladlgir 93 
                 ++pg+l + D+++v   +g g++y  ++vd++s+++++  ++++ +  t+++ll+  v  f +++   ++r+l+D+g+ey+ k    +++ +la ++i+
  EHT97928.1 161 AHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAHCKLYTSK-TPITAADLLNDRVLPFYESQglpMLRILTDRGTEYCGKveqhDYQLYLAINDID 258
                 69**********666566777***********************.99999999988888888877898******************************* PP

         rve  94 vsftrpgrpqdnGkvErfhrtlkde 118
                 ++ t++ +pq+nG++Erfh+t+ ++
  EHT97928.1 259 HTKTKAMSPQTNGICERFHKTILQD 283
                 *********************9886 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   1.4e-21   2.2e-18       1      62 [.      11      73 ..      11      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.4e-21
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalld.rrrsgrprnrlseeqe 62
                ++++ll+lae++++vs ++k++g+sr+t+yr++++  egG++al + +rr ++++nr +e++e
  EHT97928.1 11 HKAGLLNLAEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDALVNqNRRVPNLKNRADEATE 73
                689**********************************************************98 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.4e-13   2.3e-10       2      61 ..     256     319 ..     255     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.4e-13
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellneel....frslaearekleawredYNteRPHss 61 
                 +i +  ++  +Pq+Ng +E+f++t+ + +++ +       +l+ +++ l++w+++YN+eR H++
  EHT97928.1 256 DIDHTKTKAMSPQTNGICERFHKTILQDFYQVTFrkklCGDLESLQADLDNWLWHYNNERTHQG 319
                 5777788899*******************998776677679*********************86 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.9e-09   9.6e-06       9      50 ..      19      60 ..      11      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.9e-09
      HTH_28  9 laaGhsvreaArelgisrrtvyrWikryeegGiagLvprrrr 50
                + + ++v+ a++++g+sr+t yr      egGi++Lv++ rr
  EHT97928.1 19 AEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDALVNQNRR 60
                4445699*******************************9886 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07   0.00026       7      49 ..      12      54 ..       9      55 .. 0.86
   2 ?   -1.3   0.1       1.3   2.1e+03       5      25 ..     120     144 ..     118     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-07
      HTH_23  7 RlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegl 49
                ++  l l+ e  +v+++++++gvsr T yr+ +  +e+G+++l
  EHT97928.1 12 KAGLLNLAEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDAL 54
                5556667777889********************9999***998 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
      HTH_23   5 reRlrillllae....GlsvreIAr 25 
                 r+Rlr+l          l+ ++IA+
  EHT97928.1 120 RKRLRALEEKVAregiVLTDAQIAA 144
                 6788888777755677888888886 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.1e-06     0.015      24      41 ..      25      42 ..      16      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.1e-06
                STTTSSSS---SSSS--S CS
       HTH_7 24 iskIAkevnisRsTvYRy 41
                +sk +k+ ++sR T+YRy
  EHT97928.1 25 VSKACKIMGVSRDTFYRY 42
                7899*************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.6e-05     0.025      15      37 ..      19      41 ..      18      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                HHTTT-HHHHHHHHTS-HHHHHH CS
       HTH_8 15 ertgGnkskAArlLGisRrtLyr 37
                ++  Gn+skA+++ G+sR t+yr
  EHT97928.1 19 AEELGNVSKACKIMGVSRDTFYR 41
                56669****************98 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.2e-05     0.052       1      73 []      38     111 ..      38     111 .. 0.86
   2 ?   -1.8   0.0         3     5e+03      16      41 ..     125     149 ..     113     172 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-05
      HTH_32   1 TvsrwlkRyneeGlegLkdrprr.grpr...klsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 
                 T++r+ +  +e+G+++L  + rr +  +   + ++++++++++ + e p+ +  + + +l ++ gv +S s v+ i+
  EHT97928.1  38 TFYRYQELAAEGGIDALVNQNRRvP--NlknRADEATERAVVEYAVEFPAHGQHRTSNEL-RKKGVFISGSGVRSIW 111
                 78888888889*******9988844..33358*************888999999999999.777799*****99987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
      HTH_32  16 gLkdrprrgrpr.klsdevrariiall 41 
                 +L+++    r    l+d++ a++ + +
  EHT97928.1 125 ALEEK--VAREGiVLTDAQIAALEKKA 149
                 44444..12233236666666666655 PP

>> rve_2  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.6e-05     0.042      12      45 ..     289     328 ..     276     329 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
       rve_2  12 vygetfktleeleaaiedYIewYNnkRlk......glsPv 45 
                 ++++ + +le+l+a +++    YNn+R +      g +P+
  EHT97928.1 289 FRKKLCGDLESLQADLDNWLWHYNNERTHqgkmccGRTPM 328
                 56778**********************8766566677776 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00024      0.39      44      61 ..      25      42 ..      22      43 .. 0.93
   2 ?   -3.1   0.0       5.3   8.6e+03      31      38 ..      94     101 ..      93     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00024
      HTH_22 44 vekvAekLgiSraTvYry 61
                v+k ++ +g+Sr T Yry
  EHT97928.1 25 VSKACKIMGVSRDTFYRY 42
                8999*************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
      HTH_22  31 aLdekGiF 38 
                 +L +kG+F
  EHT97928.1  94 ELRKKGVF 101
                 799****9 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035      0.58       4      21 ..      25      42 ..      24      62 .. 0.81
   2 ?   -3.0   0.1       5.3   8.7e+03      20      47 ..      94     120 ..      90     123 .. 0.62
   3 ?   -3.2   0.1       6.2     1e+04      41      48 ..     302     309 ..     301     310 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
      HTH_17  4 veEaAelLgvsrstvyrl 21
                v+ a+++ gvsr t yr+
  EHT97928.1 25 VSKACKIMGVSRDTFYRY 42
                789*************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
      HTH_17  20 rlirrgelpaakiGrrwriprsdleewl 47 
                 +l+++g +   + G r    r dle + 
  EHT97928.1  94 ELRKKGVF-ISGSGVRSIWQRHDLENFR 120
                 56667766.4455555666677777775 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.2
      HTH_17  41 sdleewle 48 
                 +dl+ wl 
  EHT97928.1 302 ADLDNWLW 309
                 79****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2578.59
//
Query:       EHT97929.1  [L=161]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-29  102.9   0.0    2.9e-29  102.1   0.0    1.4  1  DDE_Tnp_IS240  DDE domain
    2.1e-09   37.3   0.2    2.1e-09   37.3   0.2    1.1  1  DDE_Tnp_IS66   Transposase IS66 family
    2.4e-07   31.0   0.3    5.8e-07   29.7   0.1    1.7  2  rve            Integrase core domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   4.8e-33   2.9e-29       2      81 ..      75     153 ..      74     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 4.8e-33
  DDE_Tnp_IS240   2 kswrvDETyvkikGkwaYlyravDkegrildflvskrRdtkaakaflrkalkkeklepeeivtDkasayasalkelkreg 81 
                    ++wr+DET +k+kG+w+YlyravD +g+++dfl++++Rd++aa +f+rka++++ +epe++++Dk++a+ +al++l+ + 
     EHT97929.1  75 RRWRMDETCIKVKGEWKYLYRAVDTDGQTIDFLLTAKRDAAAALRFFRKAIRHH-GEPEVVTIDKSGANTAALATLNGSV 153
                    69****************************************************.*********************9865 PP

>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.2   3.5e-13   2.1e-09       6     122 ..      15     122 ..      10     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.5e-13
  DDE_Tnp_IS66   6 psllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtdkrkp 102
                   + ++A+ + +  a+ l+l+ +e+++a+ G+ ++ +tl++wv+r   ll+++  + k+++ +     +DET ++       kg+ +yl+ +v ++  +
    EHT97929.1  15 TDIIAQCVRWYLAYTLSLRDLEDMMAERGIIVDHSTLHRWVIRLVPLLDKVFRRCKRTVGRR--WRMDETCIK------VKGEWKYLYRAVDTD-GQ 102
                   6799******************************************************9765..579******......89**********999.79 PP

  DDE_Tnp_IS66 103 avlfeyspsRggevaealLa 122
                   ++ f  +++R +++a +++ 
    EHT97929.1 103 TIDFLLTAKRDAAAALRFFR 122
                   999*********99998855 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.42   2.5e+03      25      49 ..      13      36 ..       6      51 .. 0.70
   2 !   29.7   0.1   9.6e-11   5.8e-07       4      79 ..      73     143 ..      70     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.42
         rve 25 yllvvvddfsrlilaealsdemdas 49
                y + ++  + r+ la+ ls + d +
  EHT97929.1 13 YPTDIIAQCVRWYLAYTLSLR-DLE 36
                556677777788888888777.444 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 9.6e-11
         rve   4 pgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseyt 79 
                  g++w +D t ++   +g+++yl+ +vd+    i    + ++ da+++l++ ++a+++ g+  pe+v+ D+  + t
  EHT97929.1  73 VGRRWRMDETCIK--VKGEWKYLYRAVDTDGQTIDFLLTAKR-DAAAALRFFRKAIRHHGE--PEVVTIDKSGANT 143
                 5899*********..55668**********************.******************..9******877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1215.16
//
Query:       EHT97930.1  [L=83]
Description: hypothetical protein CKS_4605 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   10.6   0.0       0.17   10.3   0.0    1.0  1  DUF859    Siphovirus protein of unknown function (DUF859)


Domain annotation for each model (and alignments):
>> DUF859  Siphovirus protein of unknown function (DUF859)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.6e-06      0.17      62     104 ..       9      53 ..       4      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.6e-06
      DUF859  62 sySgsPsvlssns..eiqLidktvtvnHnsdGkktlsvsAsfsgs 104
                 ++Sg+ ++ ss s  +i L+   + +  n+dG++++ v A++ g 
  EHT97930.1   9 EWSGRRQIQSSASvnSICLLKSALDIGFNDDGTQVMPVPARIGGR 53 
                 89**999998764339************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 662.85
//
Query:       EHT97931.1  [L=325]
Description: hypothetical protein CKS_4604 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-82  274.9   0.0    4.7e-82  274.5   0.0    1.1  1  Transposase_31  Putative transposase, YhgA-like
     0.0095   15.6   6.8      0.016   14.9   6.8    1.4  1  Yae1_N          Essential protein Yae1, N terminal
  ------ inclusion threshold ------
       0.07   12.9   0.8       0.16   11.7   0.1    2.0  2  LPD23           Large polyvalent protein associated domain 23


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.5   0.0   7.8e-86   4.7e-82       2     203 ..      14     214 ..      13     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.5 bits;  conditional E-value: 7.8e-86
  Transposase_31   2 pHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYavai 96 
                     pHD lfk++l++ +tardfl  hlp+el++l+dl+tl+lesgsfiee+lr++++D+L+s+kt eg egyiy+liEh+sspd++mafrL+rY++a+
      EHT97931.1  14 PHDGLFKTFLTHTDTARDFLALHLPAELLQLCDLTTLQLESGSFIEENLRTYFADVLYSLKTAEG-EGYIYTLIEHQSSPDRHMAFRLMRYSIAA 107
                     9***************************************************************9.***************************** PP

  Transposase_31  97 merhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkklv 190
                     m++hl+a++++ lplvipl+f hG+ + wp+ l++ +lf++p +a++ly+ +f+L+D+ +++ddei+++rr+all+l++kh ++rdlael+++lv
      EHT97931.1 108 MQKHLDAGHEQ-LPLVIPLLFSHGRGSpWPWTLNWTELFASPGTARKLYTGDFPLIDVGAIDDDEIMKHRRMALLELMLKHAQTRDLAELTEHLV 201
                     ***********.*********************************************************************************** PP

  Transposase_31 191 elleelekteeql 203
                     +ll ++++t+eql
      EHT97931.1 202 TLLIAGYTTDEQL 214
                     *********9986 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   6.8   2.7e-06     0.016      12      38 ..     258     284 ..     256     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-06
      Yae1_N  12 qglqeGfdeGyqeGaqlGlelGqilGv 38 
                 +gl++G + G+++G ++G++lG+ +G+
  EHT97931.1 258 KGLEKGLEKGLEKGLEKGIQLGEQRGI 284
                 688888888888888888888888886 PP

>> LPD23  Large polyvalent protein associated domain 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.6   3.6e+03      18      26 ..     251     259 ..     243     262 .. 0.84
   2 ?   11.7   0.1   2.8e-05      0.16      13      40 ..     290     317 ..     277     319 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.6
       LPD23  18 eAkeleaqG 26 
                  A++le++G
  EHT97931.1 251 IAQRLEQKG 259
                 59*****99 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.8e-05
       LPD23  13 lealaeAkeleaqGedaesIrqeTGWfr 40 
                  + l+ A+ + ++G d++++ + TG ++
  EHT97931.1 290 EATLKIARTMLQSGIDRNTVMAMTGLTE 317
                 57899********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2772.90
//
Query:       EHT97932.1  [L=136]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-23   81.1   0.7    1.5e-22   80.3   0.7    1.4  1  Resolvase     Resolvase, N terminal domain
    2.1e-09   37.3   0.0    4.5e-09   36.3   0.0    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
      7e-07   28.9   0.2    2.2e-06   27.3   0.1    1.9  1  HTH_38        Helix-turn-helix domain
    3.3e-06   26.4   0.2    8.5e-06   25.1   0.2    1.7  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
    5.6e-06   26.4   1.0    9.7e-06   25.6   0.2    1.8  2  HTH_28        Helix-turn-helix domain
      2e-05   24.2   0.6    6.6e-05   22.6   0.1    2.0  3  HTH_23        Homeodomain-like domain
    0.00038   20.4   3.4    0.00049   20.1   0.1    2.5  3  HTH_29        Winged helix-turn helix
    0.00048   19.1   0.0    0.00059   18.8   0.0    1.0  1  UxuA          D-mannonate dehydratase (UxuA)
     0.0012   18.9   0.2       0.18   11.9   0.1    3.0  2  HTH_22        HTH domain
     0.0043   17.3   0.0     0.0098   16.2   0.0    1.5  1  HTH_Tnp_1     Transposase
  ------ inclusion threshold ------
        0.1   12.3   0.2        4.2    7.0   0.1    2.3  2  HTH_50        Helix-turn-helix domain
       0.13   12.0   0.5         12    5.7   0.0    3.0  3  HTH_DeoR      DeoR-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.7   9.9e-26   1.5e-22      64     145 ..       3      85 ..       1      86 [. 0.96

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 9.9e-26
                 EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEESS...SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase  64 kgdvlvvekldRLaRsvrdlltlleelrekgvslvslde.gidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 +gdvl+v+kldRL+R++ d+ +++e+l+++g+++++l+  g+d ++++g++++q+++a+aefe++l+ ert++gla+a+a+Gk
  EHT97932.1   3 NGDVLIVTKLDRLGRNAMDVRKTVEQLAKAGIRVHCLALgGVDLTSAAGKMTMQVISAVAEFEKDLLIERTHSGLARARAAGK 85 
                 49************************************637*****************************************8 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0     3e-12   4.5e-09       1      40 [.      88     127 ..      88     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3e-12
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS-- CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYR 40 
                 GRp++l+ ++ +++++ l++G sis++A+++++sR+T+ R
  EHT97932.1  88 GRPPALNNEQRQTALEQLKAGASISAVARQFGTSRQTIMR 127
                 9************************************977 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.4e-09   2.2e-06       3      39 ..      91     127 ..      89     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
      HTH_38   3 khLsleeReeIerllaeGlslreIArrLgrspsTIsR 39 
                   L+ e+R++    l++G s++++Ar+ g s++TI R
  EHT97932.1  91 PALNNEQRQTALEQLKAGASISAVARQFGTSRQTIMR 127
                 5799*******************************99 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   5.7e-09   8.5e-06      17      47 ..      98     128 ..      98     133 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.7e-09
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVwri 47 
                   ++ +le+l+ ++s++avArq+g+S  T++r 
    EHT97932.1  98 RQTALEQLKAGASISAVARQFGTSRQTIMRL 128
                   5789*************************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.3   4.9e+03      14      23 ..      79      88 ..      70      91 .. 0.62
   2 !   25.6   0.2   6.5e-09   9.7e-06       1      33 [.      97     129 ..      97     132 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.3
      HTH_28 14 svreaArelg 23
                ++r+a +++g
  EHT97932.1 79 RARAAGKRFG 88
                5566666666 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.5e-09
      HTH_28   1 qRleiikllaaGhsvreaArelgisrrtvyrWi 33 
                 qR +++++l+aG s++++Ar++g+sr+t+ r++
  EHT97932.1  97 QRQTALEQLKAGASISAVARQFGTSRQTIMRLR 129
                 899**************************9976 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.3   4.9e+03      16      25 ..      22      31 ..      14      32 .. 0.70
   2 ?   -2.6   0.0       3.5   5.3e+03      19      28 ..      79      88 ..      68      91 .. 0.61
   3 !   22.6   0.1   4.4e-08   6.6e-05       5      38 ..      96     129 ..      93     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.3
      HTH_23 16 eGlsvreIAr 25
                ++++v++ A+
  EHT97932.1 22 VRKTVEQLAK 31
                4777777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
      HTH_23 19 svreIAreLg 28
                + r++ +++g
  EHT97932.1 79 RARAAGKRFG 88
                4455566666 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 4.4e-08
      HTH_23   5 reRlrillllaeGlsvreIAreLgvsrrTvyrwl 38 
                 ++R+ +l  l+ G+s++++Ar++g sr+T+ r +
  EHT97932.1  96 EQRQTALEQLKAGASISAVARQFGTSRQTIMRLR 129
                 57999*************************9987 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.9   5.8e+03       1      10 [.      23      32 ..      20      36 .. 0.51
   2 ?    2.0   0.3      0.14   2.1e+02      39      63 .]      75      99 ..      69      99 .. 0.85
   3 !   20.1   0.1   3.3e-07   0.00049       1      35 [.      98     131 ..      98     136 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.9
      HTH_29  1 Raqallllae 10
                R+++ +l++ 
  EHT97932.1 23 RKTVEQLAKA 32
                3344444443 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
      HTH_29 39 gGlaalld.rrrsgrprnrlseeqea 63
                 Gla ++  ++r grp   l  eq++
  EHT97932.1 75 SGLARARAaGKRFGRPPA-LNNEQRQ 99
                6899999999999***97.9***997 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 3.3e-07
      HTH_29   1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkr 35 
                 R +al  l+ G s +s +A++ g sr+t++r +++
  EHT97932.1  98 RQTALEQLKAGAS-ISAVARQFGTSRQTIMRLRDD 131
                 778999******8.*****************9987 PP

>> UxuA  D-mannonate dehydratase (UxuA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.9e-07   0.00059      74     175 ..       9     111 ..       4     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.9e-07
                 HHT-TTHHHHHHHHHHHHHHHHHTT--EEEE---SS--S--SEEEEE-TTS-EEEEE-HHHHHHHHHH.TT--TTGGGGS--T.T-S---HHHHHHHHG CS
        UxuA  74 klgteerdryienykqtirnlakiGvkvvCYnfmpvldWtrtdleykledgskalrfdkkeiealelk.ilrrkeaekeytlP.gaeeerldelrelle 170
                  +++++  r + ++++t+ +lak+G++v C   + ++d t +  +++++  s + +f+k+ + + + + + r ++a k +  P + ++e+++   e+l+
  EHT97932.1   9 VTKLDRLGRNAMDVRKTVEQLAKAGIRVHCLA-LGGVDLTSAAGKMTMQVISAVAEFEKDLLIERTHSgLARARAAGKRFGRPpALNNEQRQTALEQLK 106
                 5677788899999*****************97.6899**********************987766666699*999999998651666676777777777 PP

                 CCTT- CS
        UxuA 171 aykki 175
                 a  +i
  EHT97932.1 107 AGASI 111
                 66655 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   1.6e+02      28      49 ..       8      31 ..       5      33 .. 0.77
   2 !   11.9   0.1   0.00012      0.18      15      58 ..      89     125 ..      78     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
      HTH_22 28 ivraLdekG..iFllkgavekvAe 49
                iv +Ld+ G  + +++++ve++A+
  EHT97932.1  8 IVTKLDRLGrnAMDVRKTVEQLAK 31
                6777776554489999***99998 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
      HTH_22  15 kpverltkeekieivraLdekGiFllkgavekvAekLgiSraTv 58 
                  p  +l++e+++++ ++L++ G      +++ vA+++g Sr+T+
  EHT97932.1  89 RP-PALNNEQRQTALEQLKA-G-----ASISAVARQFGTSRQTI 125
                 44.77888888888888865.3.....59**************9 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.5e-06    0.0098      10      45 ..      96     130 ..      94     134 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.5e-06
   HTH_Tnp_1  10 efKariVreslepgksvsevArrhgvspnqLykWrr 45 
                 e+++ ++++  ++g+s+s vAr+ g s+++  + r 
  EHT97932.1  96 EQRQTALEQL-KAGASISAVARQFGTSRQTIMRLRD 130
                 8999999999.*****************99988876 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.05        74       7      18 ..      60      71 ..      55      88 .. 0.80
   2 ?    7.0   0.1    0.0028       4.2      25      42 ..     110     127 ..      96     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.05
      HTH_50  7 yveefErelikk 18
                +v+efE++l+++
  EHT97932.1 60 AVAEFEKDLLIE 71
                699*****9864 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0028
      HTH_50  25 StRklAkrLGvShtaian 42 
                 S+  +A++ G+S  +i++
  EHT97932.1 110 SISAVARQFGTSRQTIMR 127
                 77789***********97 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.57   8.6e+02      29      48 ..      20      37 ..       9      49 .. 0.72
   2 ?    2.6   0.0     0.075   1.1e+02      37      52 ..      63      78 ..      61      82 .. 0.80
   3 ?    5.7   0.0    0.0079        12      15      31 ..     109     125 ..      98     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.57
    HTH_DeoR 29 aTiRRDLneLeeqglltRth 48
                + +R+  ++L+++g+  R+h
  EHT97932.1 20 MDVRKTVEQLAKAGI--RVH 37
                557888888888888..666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.075
    HTH_DeoR 37 eLeeqglltRthGGav 52
                e e++ l++Rth G++
  EHT97932.1 63 EFEKDLLIERTHSGLA 78
                5677888******986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0079
    HTH_DeoR  15 lsveelvellgvSeaTi 31 
                  s+  ++ ++g+S +Ti
  EHT97932.1 109 ASISAVARQFGTSRQTI 125
                 58999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1165.02
//
Query:       EHT97933.1  [L=84]
Description: hypothetical protein CKS_4602 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 728.91
//
Query:       EHT97934.1  [L=106]
Description: hypothetical protein CKS_4601 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-24   85.5   0.0    2.2e-24   85.4   0.0    1.0  1  Gp49        Phage derived protein Gp49-like (DUF891)
  ------ inclusion threshold ------
       0.18   12.4   0.0       0.28   11.8   0.0    1.3  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> Gp49  Phage derived protein Gp49-like (DUF891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   2.5e-28   2.2e-24       1      90 []      12     100 ..      12     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 2.5e-28
        Gp49   1 eeldalpkkarakilaaldlleeggpdlgkplvkkledglwElrpksaggiiRvlyafdpgrkvilLhafqKktqktpkkeielAekrlk 90 
                 +el+alp+++ ak++++l++le++  +l++p++k l++gl+E+r+ +++ i+R l+++++g+++++L +f+Kkt ktp +ei+lA +rl+
  EHT97934.1  12 DELEALPAEIAAKMVRLLEKLEKNPRSLREPHCKPLGNGLFEVRTMGGD-IARGLWVYQTGQNIFVLRIFIKKTPKTPPAEIDLAWRRLE 100
                 689*********************888******************6555.************************************9985 PP

>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.28       1      83 [.       4      79 ..       4      84 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
                EEEEHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHTTTSEE..CTSTCCTTEEEEEEC.....TEEEEEEEETSTTEEEEEEE CS
  ParE_toxin  1 vrltprAlkdlkkiadyiardgpaakrfldaleealellaenpalgrp..rrelglkglrririg.....dyriiYriddeelvvvilrv 83
                v+l++ A ++l+++   i      a++++    + le l+ np++ r+  ++ lg +gl+++r+      + + +Y+  +++++  +lr+
  EHT97934.1  4 VKLHDNAGDELEALPAEI------AAKMV----RLLEKLEKNPRSLREphCKPLG-NGLFEVRTMggdiaRGLWVYQ--TGQNIF-VLRI 79
                678888999999998766......44444....4446788888888884444444.466666665666666677777..366777.7777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 810.12
//
Query:       EHT97935.1  [L=93]
Description: hypothetical protein CKS_4600 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-12   45.2   0.0    1.2e-11   44.4   0.0    1.4  1  HTH_3           Helix-turn-helix
    6.8e-10   39.1   0.4    9.8e-10   38.6   0.4    1.2  1  HTH_31          Helix-turn-helix domain
    2.5e-07   30.5   0.1    3.6e-07   30.0   0.1    1.3  1  HTH_37          Helix-turn-helix domain
    3.2e-07   30.3   0.0    6.1e-07   29.4   0.0    1.4  1  HTH_19          Helix-turn-helix domain
     0.0015   18.2   0.1     0.0083   15.9   0.0    2.0  2  HTH_38          Helix-turn-helix domain
     0.0018   18.0   0.1     0.0098   15.7   0.0    2.0  2  HTH_23          Homeodomain-like domain
     0.0027   18.1   0.0     0.0047   17.3   0.0    1.4  1  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0069   16.2   0.0      0.022   14.6   0.0    1.9  1  HTH_25          Helix-turn-helix domain
     0.0075   16.6   0.2       0.68   10.3   0.1    2.6  3  HTH_Tnp_1       Transposase
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.032   14.1   0.0    1.5  1  MarR_2          MarR family
      0.037   13.6   0.0      0.073   12.6   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.038   14.1   0.1       0.11   12.6   0.0    1.9  2  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
      0.085   12.7   0.1         14    5.5   0.0    2.4  2  TetR_N          Bacterial regulatory proteins, tetR family
       0.11   12.7   0.0       0.18   12.1   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.13   12.1   0.0        5.4    6.9   0.0    2.4  2  MerR            MerR family regulatory protein
       0.25   11.4   1.0        1.2    9.2   0.2    2.3  2  MinE            Septum formation topological specificity fact


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.1e-14   1.2e-11       1      53 [.      36      88 ..      36      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.1e-14
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                l+e+R  +gl  +++A+++G+ +st+sr+E+++++ s+e+l ++a+a+gv ++
  EHT97935.1 36 LAEWRSHAGLNSADVAARMGIAPSTLSRMEKNITSASVENLSRYARACGVNTA 88
                67888899******************************************876 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.4   8.8e-13   9.8e-10       4      57 ..      34      86 ..      31      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 8.8e-13
      HTH_31  4 alLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +lL+++R  aGL  ++vA+r g+ +stlsr+E       s + l ++ara+g+ 
  EHT97935.1 34 ELLAEWRSHAGLNSADVAARMGIAPSTLSRMEKNIT-SASVENLSRYARACGVN 86
                689*********************************.6**************95 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   3.2e-10   3.6e-07      12      72 ..      24      84 ..       5      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.2e-10
                HHH.HHHHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTT CS
      HTH_37 12 elk.aKaqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalG 72
                e++  K +l   +ae + + +l  +++a+++gia + +sr+++ ++++ s++ L +++ a G
  EHT97935.1 24 EAEvRKERLQELLAEWRSHAGLNSADVAARMGIAPSTLSRMEK-NITSASVENLSRYARACG 84
                4442345555559*****************************8.**************9998 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   5.4e-10   6.1e-07       2      59 ..      34      90 ..      34      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5.4e-10
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                e L e R+++gl+ +++a r gi +s +s  E++ +  +s e+l ++a+a+g+++  l
  EHT97935.1 34 ELLAEWRSHAGLNSADVAARMGIAPSTLSRMEKNIT-SASVENLSRYARACGVNTATL 90
                679999****************************77.99**************97555 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.4e-06    0.0083      13      39 ..      36      63 ..      30      64 .. 0.86
   2 ?   -0.2   0.0      0.78   8.7e+02      27      36 ..      80      89 ..      74      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.4e-06
      HTH_38 13 Ierll.aeGlslreIArrLgrspsTIsR 39
                ++ ++  +Gl+ +++A r+g +psT sR
  EHT97935.1 36 LAEWRsHAGLNSADVAARMGIAPSTLSR 63
                677873599999***************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.78
      HTH_38 27 ArrLgrspsT 36
                Ar +g+++ T
  EHT97935.1 80 ARACGVNTAT 89
                99****9999 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.7e-06    0.0098       6      40 ..      30      67 ..      24      77 .. 0.78
   2 ?    0.4   0.0      0.57   6.3e+02      24      34 ..      80      90 ..      74      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.7e-06
      HTH_23  6 eRlr.illllae..GlsvreIAreLgvsrrTvyrwlkr 40
                eRl+  l   +   Gl+ +++A+++g+ ++T++r  k 
  EHT97935.1 30 ERLQeLLAEWRShaGLNSADVAARMGIAPSTLSRMEKN 67
                55554555566588********************9886 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.57
      HTH_23 24 AreLgvsrrTv 34
                Ar++gv+  T+
  EHT97935.1 80 ARACGVNTATL 90
                8999*999886 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.2e-06    0.0047       5      57 ..      39      90 ..      31      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.2e-06
      HTH_26  5 lmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDL 57
                +  + g++++++a + gi  +tlsr+ k+ +++ s + L++ ++a g++ + L
  EHT97935.1 39 WRSHAGLNSADVAARMGIAPSTLSRMEKN-ITSASVENLSRYARACGVNTATL 90
                44567899*********************.78************999887766 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05     0.022       2      37 ..      36      71 ..      35      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TT CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfda 37
                L + R  +gl   +va++  I++++l ++E++  +a
  EHT97935.1 36 LAEWRSHAGLNSADVAARMGIAPSTLSRMEKNITSA 71
                778899************************997665 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.2   1.4e+03      69      69 ..      31      31 ..       5      42 .. 0.55
   2 !   10.3   0.1   0.00061      0.68      20      42 ..      41      63 ..      18      75 .. 0.76
   3 ?    4.0   0.0     0.057        64      25      41 ..      75      91 ..      69      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
   HTH_Tnp_1 69 e 69
                +
  EHT97935.1 31 R 31
                2 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00061
   HTH_Tnp_1 20 lepgksvsevArrhgvspnqLyk 42
                  +g + ++vA r+g+ p++L++
  EHT97935.1 41 SHAGLNSADVAARMGIAPSTLSR 63
                56899999*************97 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.057
   HTH_Tnp_1 25 svsevArrhgvspnqLy 41
                + s+ Ar  gv+ ++L+
  EHT97935.1 75 NLSRYARACGVNTATLF 91
                56889***********8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.9e-05     0.032      10      41 ..      35      64 ..      33      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsri 41
                +La+ + + g  l+ +++a+r+g+ +s++sr+
  EHT97935.1 35 LLAEWRSHAG--LNSADVAARMGIAPSTLSRM 64
                6777788999..*******************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.5e-05     0.073      13      36 ..      40      63 ..      29      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
      HTH_24 13 qknprisqreLAerlglSpstvnr 36
                + +++++ +++A r g+ pst++r
  EHT97935.1 40 RSHAGLNSADVAARMGIAPSTLSR 63
                5599*****************998 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001      0.11      15      34 ..      46      66 ..      31      67 .. 0.88
   2 ?   -1.5   0.0       2.6   2.9e+03      19      24 ..      80      85 ..      70      90 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
     AbiEi_4 15 ttrelea.aGispsalrrLvr 34
                 +++++a  Gi ps+l+r+ +
  EHT97935.1 46 NSADVAArMGIAPSTLSRMEK 66
                689**999**********987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.6
     AbiEi_4 19 leaaGi 24
                ++a+G+
  EHT97935.1 80 ARACGV 85
                344665 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        14      17      35 ..      45      63 ..      40      64 .. 0.85
   2 ?    5.1   0.0     0.017        19      23      34 ..      80      91 ..      65      93 .] 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
                --HHHHHHHHTSSHHHHHH CS
      TetR_N 17 ttvreIAkrAGvskgalYr 35
                +  +++A+r G+++++l r
  EHT97935.1 45 LNSADVAARMGIAPSTLSR 63
                5568************975 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.017
                HHHHTSSHHHHH CS
      TetR_N 23 AkrAGvskgalY 34
                A+++Gv+ ++l+
  EHT97935.1 80 ARACGVNTATLF 91
                89*********8 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.18      23      42 ..      45      64 ..      32      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                    B-HHHHHHHHTS-HHHHHHH CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsem 42
                       +d+a r++++ps+ s m
      EHT97935.1 45 LNSADVAARMGIAPSTLSRM 64
                    56799*************99 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0048       5.4       3      18 ..      48      63 ..      46      67 .. 0.83
   2 ?    3.0   0.0     0.081        91       6      18 ..      80      92 ..      74      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0048
                HHHHHHHTTTHHHHHH CS
        MerR  3 gevAeltGvsprtLRy 18
                 +vA + G+ p+tL +
  EHT97935.1 48 ADVAARMGIAPSTLSR 63
                58***********955 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.081
                HHHHTTTHHHHHH CS
        MerR  6 AeltGvsprtLRy 18
                A+++Gv + tL +
  EHT97935.1 80 ARACGVNTATLFF 92
                899*******965 PP

>> MinE  Septum formation topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.5   7.3e+03      24      33 ..       5      14 ..       2      15 .. 0.70
   2 ?    9.2   0.2    0.0011       1.2       2      18 ..      25      48 ..      25      81 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.5
                TCCHHHHHHH CS
        MinE 24 lleqlkeeil 33
                +l ++k  ++
  EHT97935.1  5 TLAEMKAKLM 14
                6778888776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
                XXSSS-EEEEEEEEES........ CS
        MinE  2 aevAKeRLkliLahdR.......a 18
                aev KeRL+ +La+ R       a
  EHT97935.1 25 AEVRKERLQELLAEWRshaglnsA 48
                6788**********9976443330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 637.76
//
Query:       EHT97936.1  [L=349]
Description: secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-94  316.0   3.2    3.2e-94  315.8   3.2    1.0  1  Bac_export_2  FlhB HrpN YscU SpaS Family


Domain annotation for each model (and alignments):
>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.8   3.2   1.8e-98   3.2e-94       1     330 []       2     340 ..       2     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: 315.8 bits;  conditional E-value: 1.8e-98
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
  Bac_export_2   1 eeKteepTpkklrdarekGqvakskelssalvllaglllllllgpslveelaellrevlsa........lelllelllall.llllplllvlllaal 88 
                   +eKte+pT+kk+rd+r++Gqv ks e++s + ll++l+++ ++++++++++ael+  + +          +ll+++l+++   +++ +  +l++a++
    EHT97936.1   2 SEKTEQPTEKKKRDSRQEGQVIKSLEITSGIQLLTILAFFHFFADEVFHQIAELMLLASRLinqpfdyaFSLLTQVLVHAGgEFFALFGGMLAAATI 98 
                   59***************************************************99876666778988775566666555553667778888888899 PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  89 lanllqvgflfstkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeldleaalelllslllkllllvllall 185
                   ++ ++qvgf+++ ka+ +k +k+np+++lk+ifs++slvel+ks+lkv++++++++ +++  l  +  l ++++++a+ l+  ++ +++ ++l +++
    EHT97936.1  99 ASLVAQVGFMLAIKAVGFKGEKINPVNNLKQIFSVHSLVELFKSCLKVIALCLIFISLFRYFLAIYEVLPYCNASCAIPLFRIMIRWIWYALLTFYV 195
                   99999*********************************************************99999999*************************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHT-SEEEEETTTEEEEEEEETTTESSEEEEEEEEHHHHH CS
  Bac_export_2 186 viallDlllqrwefekklkMtkqEvKdEyKesEGdpeiKsrirqlqrelarrrmmaevpkAdvvitNPthyAVALkYdpekmeaPvvvakGadelAl 282
                   v++++D+++q ++ +k+ +M+k++vK+E K+ EGdp++K+r+ + qre+ + +++++v+++ vvi NPth+A++L Ydp +++ P+v+ kG+++ A+
    EHT97936.1 196 VLSVVDYAFQTHNTMKQQRMSKEDVKQETKDLEGDPQVKKRRCEVQREMQSGSLAQNVKQSAVVIRNPTHIAICLGYDPVDTPIPTVLEKGVEARAE 292
                   ************************************************************************************************* PP

                   HHHHHHHHHT--EEE-HHHHHHHHHH--TTSB--GGGHHHHHHHHHHH CS
  Bac_export_2 283 kireiAeengvpivenppLAraLyatvevgqeIpeelyeaVaeiLayv 330
                   +i ++A ++ vp+ven  LAr+L+ +v+ g++I+e+l+e Va++L++v
    EHT97936.1 293 HIVALAIRESVPVVENIALARKLFFSVKSGEAISESLFEPVAALLRMV 340
                   *********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2507.37
//
Query:       EHT97937.1  [L=257]
Description: type III secretion system inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-49  168.2  24.1    2.3e-49  168.1  24.1    1.0  1  Bac_export_1  Bacterial export proteins, family 1


Domain annotation for each model (and alignments):
>> Bac_export_1  Bacterial export proteins, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1  24.1   1.3e-53   2.3e-49       2     225 ..      10     240 ..       9     245 .. 0.92

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 1.3e-53
  Bac_export_1   2 lafllvfaRilallllaPvfgsrsipa.rvrlglalalalll....aaaalpalpsvesllllllkEvliGlllGfllrlvfaalqlaGeiidlqmG 93 
                   ++++l+++R l+l ll+P++++ ++    +r+g+ la+ l +    +  + ++ ++  s+l ++  E++iGl+lGf+++l+f+a+++aG +id+ +G
    EHT97937.1  10 VTVALAMMRPLGLTLLFPLLQTGNLGStLIRNGVLLAIVLPVlplfY--TQSVIHQGWSWLRVIPGELVIGLMLGFCAALPFWAVDMAGFLIDTLRG 104
                   6789******************9987659***********9977542..334456789999************************************ PP

  Bac_export_1  94 lsmasvfdpasgaqssvlgqflnllalllflaldghllliealveSfelipvg..legk....laellvellsdlfvlalqlalPvvaalllvnlal 184
                   +++  vf+pa+++q+s++g ++++++++lf++++g+  l++al++S++++p+g  l  +    ++++l+ ++  l +l+l ++lP+v++++l++lal
    EHT97937.1 105 ATIGIVFNPAMSVQTSIFGLLFSQFLCALFIITGGFSQLLTALYDSYHYLPPGkaL--AfnipFLHFLLAQWRVLYQLCLSFSLPAVLCMMLADLAL 199
                   ****************************************************9651..134679999****************************** PP

  Bac_export_1 185 GllsRaaPqlnvfvvgfplkilvgllllllllplllevfer 225
                   Gl++R+a+qlnvf++++p+k +++llll+l+lp+ +++++ 
    EHT97937.1 200 GLVNRSAQQLNVFFLSMPVKSALALLLLMLSLPYAFHHYKL 240
                   ***********************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1891.03
//
Query:       EHT97938.1  [L=88]
Description: type III secretion system inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-24   84.8  12.3    3.2e-24   84.7  12.3    1.0  1  Bac_export_3    Bacterial export proteins, family 3
  ------ inclusion threshold ------
       0.22   10.0   3.9       0.24    9.9   3.9    1.0  1  Cellulose_synt  Cellulose synthase
       0.48    9.7   3.3       0.49    9.7   3.3    1.0  1  DUF3810         Protein of unknown function (DUF3810)
       0.75    9.1   4.0        0.7    9.2   3.2    1.3  1  SLATT_5         SMODS and SLOG-associating 2TM effector domai
        0.8    8.8   8.0       0.45    9.7   5.2    1.7  2  Bac_export_2    FlhB HrpN YscU SpaS Family
        1.5    6.8   6.0        1.6    6.7   6.0    1.0  1  UPF0182         Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> Bac_export_3  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7  12.3   1.1e-27   3.2e-24       2      73 ..       6      77 ..       5      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 1.1e-27
  Bac_export_3  2 vidlarealllvlllsaplllvalvvGlvvsifQaaTqIqEqTLsfvpKllavllvllllgpwmletlvdft 73
                  +i+++++ l+lvl+ s+p++l+a vvG++vs++Qa+TqIq+qTL+f++Kllav+lv++ + +w++  l+ +t
    EHT97938.1  6 LIHYVTQLLWLVLMTSLPVVLIASVVGIAVSLLQALTQIQDQTLQFMIKLLAVALVIMATYHWLGGLLLAYT 77
                  58899******************************************************************9 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.9     8e-05      0.24     619     680 ..      13      74 ..       3      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8e-05
  Cellulose_synt 619 vkwttllippltllivnlvavvvgvsrainsayeswgkllGklffafwvlvhlypflkGllG 680
                     + w  l+    ++li  +v+++v++ +a+++  ++  +++ kl+    v++  y +l Gll 
      EHT97938.1  13 LLWLVLMTSLPVVLIASVVGIAVSLLQALTQIQDQTLQFMIKLLAVALVIMATYHWLGGLLL 74 
                     45999999988999*********************************************985 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.3   0.00017      0.49      22      87 ..      16      81 ..       4      88 .] 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00017
     DUF3810 22 FSvgellivllillvilylvlaiklkkrkkkkkrllkvllrvllvllvvyflftllwgln..Yyrepl 87
                + ++  l v+li+ v+ + v  +  +  ++ + + l++++++l+v+lv+++++++l gl+  Y r+ +
  EHT97938.1 16 LVLMTSLPVVLIASVVGIAVSLL--QALTQIQDQTLQFMIKLLAVALVIMATYHWLGGLLlaYTRQVF 81
                44444444444444444444444..555677788999999***********99999987422666655 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.2   0.00023       0.7      36      81 ..      24      66 ..      18      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
     SLATT_5 36 slsllSvylivlsllsnkssestinenlldflsiilSilvlvisll 81
                ++ ++Sv++i++sll+     ++i+++ l+f++ +l++++++++++
  EHT97938.1 24 VVLIASVVGIAVSLLQ---ALTQIQDQTLQFMIKLLAVALVIMATY 66
                67899***********...999999999999999999999988766 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.2   0.00015      0.45      63     110 ..       8      55 ..       1      60 [. 0.87
   2 ?    2.8   0.4     0.019        57      25      59 ..      47      81 ..      42      87 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00015
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  63 elllelllallllllplllvlllaallanllqvgflfstkalkpklsk 110
                   +++++ll+ +l++ lp++l++ +++++++llq    ++ ++l++ ++ 
    EHT97938.1   8 HYVTQLLWLVLMTSLPVVLIASVVGIAVSLLQALTQIQDQTLQFMIKL 55 
                   567899***************************999999999987765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.019
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 25 kelssalvllaglllllllgpslveelaellrevl 59
                  + l+ ++ lla++l+++++ ++l   l +++r+v+
    EHT97938.1 47 QTLQFMIKLLAVALVIMATYHWLGGLLLAYTRQVF 81
                  44555666677777777777777776666666665 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.0   0.00055       1.6     144     216 ..       9      80 ..       2      87 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00055
     UPF0182 144 lllslllalvllaliavllvyllsgeslgirl..kfaelskaarrhlsvllallllllalsywLdryellyskrg 216
                 ++++ll  +++++l +vl++ ++    +  +l    +++++++ + +  lla+ l+++a  +wL    l y+++ 
  EHT97938.1   9 YVTQLLWLVLMTSLPVVLIASVVGI-AV--SLlqALTQIQDQTLQFMIKLLAVALVIMATYHWLGGLLLAYTRQV 80 
                 4444444444444444444333333.22..223456789999999999999999***********9999999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 688.20
//
Query:       EHT97939.1  [L=215]
Description: hypothetical protein CKS_4596 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-63  212.8   6.1    4.5e-63  212.6   6.1    1.0  1  FliP      FliP family


Domain annotation for each model (and alignments):
>> FliP  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   6.1   2.5e-67   4.5e-63       1     191 []      13     210 ..      13     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 2.5e-67
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHH.HHHHHHHHHHHHHHHHHHH CS
        FliP   1 lltvlslapallimvtsftrivivlsllrnalglqqvppnqvliglallltlfvmaPvleeineeavkplleeeiteee.alekakeplrefllkqtre 98 
                 ll +lsl++ +++m tsf+++++v+s+lrnalg+qqvppn+ l+glal+l+lf+maP++ ++++e      e ++   +   ++a  p+r+fl+k+++e
  EHT97939.1  13 LLFLLSLLSLAIVMGTSFLKLAVVFSILRNALGIQQVPPNMALYGLALVLSLFIMAPTVMAVKAEWHPAKEEATLPWLQgWDSHALGPYRQFLQKNSDE 111
                 6899**********************************************************9996655555566655525567899************ PP

                 HHHHHHHHCTT-......-SSGGG....S-HHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        FliP  99 kdlalflelaek......eeeeee....vplsvlipafviselkkafeigfllylpFlviDlvvasvlmslGmmmlsPvvislPfKlllfvlvdgwtll 187
                 k+ ++f +l ++      +    +     +l +l+paf++s+l++af+ig+l+ylpFl iDl+v++vl+++Gmmm+sP++islPfKll+f+l+ gw+l+
  EHT97939.1 112 KEAHYFRHLIAStwpeeaR----RrvkpDSLLILLPAFTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMMSPMTISLPFKLLIFLLAGGWDLI 206
                 *******997766643222....3466689********************************************************************* PP

                 XXXX CS
        FliP 188 vksL 191
                 +++L
  EHT97939.1 207 LSQL 210
                 9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1559.30
//
Query:       EHT97940.1  [L=334]
Description: type III secretion system inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-12   47.2   0.1    5.1e-12   45.6   0.1    1.7  2  FliMN_C   Type III flagellar switch regulator (C-ring) FliN C
  ------ inclusion threshold ------
        0.2   10.7   0.0        6.7    5.7   0.0    2.1  2  SepQ      SepQ protein


Domain annotation for each model (and alignments):
>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.3   1.1e+04      19      31 ..     172     184 ..     168     189 .. 0.80
   2 !   45.6   0.1   5.7e-16   5.1e-12       3      71 ..     249     317 ..     248     318 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
                 EEHHHHHHHHTTS CS
     FliMN_C  19 ltlrellnLkvGd 31 
                  +++el + ++G 
  EHT97940.1 172 ASIHELASIGPGT 184
                 6899999999997 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 5.7e-16
                 XXXXXEEEEEEEEEEEEEHHHHHHHHTTSEEE--TTGGGCEEEEETTEEEEEEEEEEETTEEEEEEEEE CS
     FliMN_C   3 lsdvpveleaelgrtrltlrellnLkvGdvipLdkpadepvevyvngkpiarGelgvvggrlavritei 71 
                 l+ +p +l +e+g++ + l+ l  L++Gd i  + + + +v+++ ng++i++Gel  +g+ + vr+t++
  EHT97940.1 249 LDALPQKLLVEVGQIDIALGTLRTLREGDLIATEARLSPDVKLRLNGRVIGEGELIACGESYLVRVTQW 317
                 677899999**********************************************************97 PP

>> SepQ  SepQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0   0.00074       6.7      46     100 ..      36      90 ..      18     101 .. 0.82
   2 ?    2.8   0.0    0.0059        53     237     300 ..     252     314 ..     229     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00074
        SepQ  46 gngirftlaysgyegrfwvseeqliqwcqelfpysesrlipedtiklmllwviqa 100
                  +g  f+++       +w++e ++ qwc+ ++  +  + +  +++  + lw +  
  EHT97940.1  36 PQGRLFSVTAEDTPCGVWLAESDWQQWCEGILGTASEQDVDAQLLAGVALWGLSP 90 
                 56777888888888899*************9999888888888888888887765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0059
        SepQ 237 vmdriycvigtinvdihklrnlkkddiidsvgyhlfgggrlirnntiiaygsivkinedfystv 300
                 + +++ + +g i++ +  lr l+  d+i  +   l    +l  n  +i  g ++   e + + v
  EHT97940.1 252 LPQKLLVEVGQIDIALGTLRTLREGDLIA-TEARLSPDVKLRLNGRVIGEGELIACGESYLVRV 314
                 556788899******************97.5668999999999999999999999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2436.34
//
Query:       EHT97941.1  [L=119]
Description: hypothetical protein CKS_4594 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.22   11.7   0.0    1.5  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05      0.22      23      54 ..      43      74 ..      24      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
  RNA_pol_Rpb2_3 23 gglskerkttevRdlhpshwGriCpveTPEGe 54
                    g+   ++++ + R +  s  G iC +eT EG+
      EHT97941.1 43 GESALRQQKQRYRLVGGSVAGLICEIETREGK 74
                    45555677788999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1001.65
//
Query:       EHT97942.1  [L=123]
Description: hypothetical protein CKS_4593 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   7.4          2    8.8   1.6    2.3  2  TBCA      Tubulin binding cofactor A
        9.8    6.6  10.4        6.5    7.2   3.1    2.2  2  Csm1_N    Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.8   0.00077       6.9      47      75 ..      24      52 ..       6      69 .. 0.78
   2 ?    8.8   1.6   0.00022         2      45      79 ..      75     110 ..      60     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00077
        TBCA 47 eevleetkamipdlkkrlekavekLeell 75
                +  l++t+++  ++++r ++ ++ L++ll
  EHT97942.1 24 TLQLQQTEQLCFQCQSRRKDLIQALNQLL 52
                3459**********************998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00022
        TBCA  45 kqeevleetkamipdlkkrlekavekLeelleee.e 79 
                 ++e  l + ++++ d++krl+ ++ +L++ l +  +
  EHT97942.1  75 HEEYGLAQQQRLLADAQKRLQGQLSELQRELVSVlK 110
                 45666889999999999****999999998877643 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.8    0.0066        59      32      62 ..       2      32 ..       1      46 [. 0.78
   2 ?    7.2   3.1   0.00072       6.5      22      66 ..      70     114 ..      65     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0066
      Csm1_N 32 LsqkletkdqeiesLkeqlaeleekvkelee 62
                L+  l+ kd++ ++L +q+ el  +++++e+
  EHT97942.1  2 LNCLLRIKDRREHRLLRQMTELTLQLQQTEQ 32
                6667788888888888888888888888776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00072
      Csm1_N  22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                  ++l hE   L+q+ +   +  ++L+ ql el+ ++ +  ++++k
  EHT97942.1  70 MNNLFHEEYGLAQQQRLLADAQKRLQGQLSELQRELVSVLKKKEK 114
                 68999****************************999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1650  (0.0920297); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 940.33
//
Query:       EHT97943.1  [L=440]
Description: putative type III secretion system ATP synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-71  238.9   0.0    5.4e-71  238.6   0.0    1.1  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.3e-22   79.4   0.1    2.3e-22   78.6   0.1    1.4  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
     0.0045   17.1   0.0     0.0079   16.3   0.0    1.3  1  DUF87          Helicase HerA, central domain
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.028   14.9   0.0    1.4  1  ABC_tran       ABC transporter
      0.051   14.1   0.0       0.14   12.7   0.0    1.8  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
      0.052   13.8   0.0       0.17   12.1   0.0    1.8  2  AAA_22         AAA domain
       0.13   11.2   0.1       0.29   10.1   0.1    1.5  1  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.6   0.0   2.1e-74   5.4e-71       1     213 []     149     358 ..     149     358 .. 0.99

  Alignments for each domain:
  == domain 1  score: 238.6 bits;  conditional E-value: 2.1e-74
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlAE 98 
                  Gir++D l+++++Gqr++i++a+gvGk++++++l++  +sd + ++v+iGerg+ev e++e++  +   +r+v+v++ts++p+++r+++  +++t+AE
   EHT97943.1 149 GIRAIDGLLTCGEGQRMGIFAAAGVGKSTLMSMLCRSPDSD-INVLVLIGERGREVIELIEKTLGEATRRRCVMVVSTSDRPALERMRALWVATTIAE 245
                  9************************************9999.******************************************************** PP

                  HHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  99 yfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivLdkk 196
                   frd+gk+vll+adsl+r+a+A rei+l+ ge+  + gyp++++a l++l+ERagk     Gs+t++++v ++++D+++p ++++++++dg+ivL+++
   EHT97943.1 246 AFRDRGKRVLLFADSLTRYARAAREIALAGGEVAVSGGYPPSVFAALPRLLERAGKG--ILGSITAFYTVLVESDDMNEPLADEVRSLLDGHIVLSRR 341
                  *********************************************************..88************************************* PP

                  HHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 197 laqrkhfPainvlvSvS 213
                  la++ hfPai+vl+S+S
   EHT97943.1 342 LAEAAHFPAIDVLASLS 358
                  ***************98 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   8.9e-26   2.3e-22       2      71 ..     366     435 ..     365     436 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 8.9e-26
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLiniGaYkkGsdpelDeAiakrpainafLkQgvdekvsfeetlaqLk 71 
                    s eh+++a+++r+ll+ y+++e+L++iG++++G+dp+ D+A++++ +i +fL+Q+ +e+++++e laq++
     EHT97943.1 366 SGEHQALANAIRQLLSVYRDVELLVRIGEFVRGEDPQADRAVDRYFDICHFLQQQSNEPCNLDELLAQMR 435
                    679*****************************************************************96 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.1e-06    0.0079      24      47 ..     163     186 ..     162     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
       DUF87  24 rHlAilgsTGsGKSntvavLleel 47 
                 ++++i++ +G+GKS++++ L+++ 
  EHT97943.1 163 QRMGIFAAAGVGKSTLMSMLCRSP 186
                 689******************975 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.1e-05     0.028       6      36 ..     157     187 ..     155     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllk 36 
                 l++ eg++++i+   G GKStL+++l++  +
  EHT97943.1 157 LTCGEGQRMGIFAAAGVGKSTLMSMLCRSPD 187
                 57889*********************99765 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.6e-05      0.14      34      69 .]      58      93 ..      46      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
                   TEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N 34 tlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   ++ l++++++++ ++ + ++ st Gl  G+ V+++G
     EHT97943.1 58 EGALAEVVGIDGATAQLSPFASTGGLYCGQQVRSLG 93
                   6889*****************************987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.7e-05      0.17      10      95 ..     167     256 ..     161     268 .. 0.79
   2 ?   -3.0   0.0       3.3   8.4e+03      55      82 ..     408     434 ..     394     436 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee....erpevv.fvtlpsstsskdllrellralglelkaerlsseell..ealeqalraraviell 95 
                 +++ +G+GK+tl+ +l ++ d +++       +++ev+ +++ + ++  +  + ++++  ++++ +   + ++l+  +++++a+r+r++++ll
  EHT97943.1 167 IFAAAGVGKSTLMSMLCRSPDSDINVLVligeRGREVIeLIEKTLGEATRRRCVMVVSTSDRPALE---RMRALWvaTTIAEAFRDRGKRVLL 256
                 7899****************8776665599999999997777777778888899999999999999...555554448888888888884444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.3
      AAA_22  55 dllrellralglelkaerlsseelleal 82 
                 d + +++++l+++ ++ + +++ell+++
  EHT97943.1 408 DRYFDICHFLQQQSNE-PCNLDELLAQM 434
                 5577888888887777.88888888776 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00011      0.29      25      50 ..     158     183 ..     144     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
                 G-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  25 kaGraqvvGltGvPGaGkstlvealg 50 
                 ++G+ q++G+    G+Gkstl++ l 
  EHT97943.1 158 TCGEGQRMGIFAAAGVGKSTLMSMLC 183
                 69********************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3438.93
//
Query:       EHT97944.1  [L=686]
Description: secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-209  698.2   5.2   1.5e-209  697.8   5.2    1.1  1  FHIPEP         FHIPEP family
  ------ inclusion threshold ------
        0.6    9.9   0.0        0.6    9.9   0.0    2.3  2  FA_desaturase  Fatty acid desaturase
        1.4    8.3   4.3        1.6    8.1   3.4    1.4  1  DUF3583        Protein of unknown function (DUF3583)


Domain annotation for each model (and alignments):
>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  697.8   5.2  2.5e-213  1.5e-209       2     656 ..      37     665 ..      36     667 .. 0.93

  Alignments for each domain:
  == domain 1  score: 697.8 bits;  conditional E-value: 2.5e-213
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP   2 vlmlilPlptlllDlllalnialsvlillvalyikkpldfsvFPtlLLittlfrLaLnvastrliLlegeegaGkvieaFgefvvggnlvvGlvvFlil 100
                 ++m+ilPlpt+++D+l+++nia+sv++ll+a+yi++pld+svFP+lLLittl+rL+L+++++rl+Ll+++  aG++++aFg+fvvggnl vGlv+F+i+
  EHT97944.1  37 IVMMILPLPTFMVDILITVNIAFSVILLLIAIYINDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHD--AGNIVDAFGHFVVGGNLTVGLVIFMII 133
                 89********************************************************************..*************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 101 vivqfvVitkGaeRvaEVaARFtLDamPGKqmaIDadlnaGlideeeArerreelereadfyGamDGAsKFvkGDaiagliitliniigGliiGvlqhg 199
                 +i+qf+VitkG+eRvaEV+ARF+LD+mPGKqm+ID dl+aG id  +Ar+ r+++++e++f GamDGA+KFvkGDaiag+i++l+niigG+ii v+q +
  EHT97944.1 134 TIIQFIVITKGTERVAEVSARFSLDGMPGKQMSIDGDLRAGGIDTVQARHLRQQVQQESRFLGAMDGAMKFVKGDAIAGIIVVLVNIIGGIIIAVVQYD 232
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 200 mslsealetYtlLtiGDGLvsqiPaLlisvaagiivtrva..seenlgeeivkqllanpkalliaagvllllalvpglpklvflllaallallayllkk 296
                 m+l++a++tY++L+iGDGL+ qiP+Llis++agiivtrv   +++nl++e+++ql ++p+al+++a+vl+l+al+pg+p+l f++laa++ l  +l+ +
  EHT97944.1 233 MPLGDAIQTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPgeKKQNLASELTTQLGRQPQALMLTAAVLILFALIPGFPFLDFFVLAAFTSLPFFLFWR 331
                 ***************************************986779*******************************************99998888877 PP

                 XXXXX.......XXXXXXXXXXXXXX..........TS-EEEEE-GGGHHHHHHT.......HHHHHHHHHHHHHSS---SEEEEE-TT--TTEEEEEE CS
      FHIPEP 297 kkkkeekeeekeeeeeeaeeeeeeeeeeveellk..vdplelelgyeliplvdeeqggeLlerikalrkqlaeelGlvvpeirirdnlelkpneyriki 393
                 ++++++   + +  ++          e +e+ ++  ++pl+l++  +l         g+L + i+alr +l+ee+G+ +pei+ir + +   + +++ i
  EHT97944.1 332 RSRHTQ---H-DIPQT---------GEMSEDRMQpgARPLTLHVMPSLN-------TGTLARDIDALRWRLFEEYGVPLPEITIRPDCRDYVQGMSVLI 410
                 762221...1.11111.........111222222237888888876664.......367999************************************* PP

                 TTEEEEEEE--TTSEEET.......--EEEEETTE...EEEEE-HHHHHHHHTTT--EEEHHHHHHHHHHHHHHHCHHHCHCHHHHHHHHHHHHTTHHH CS
      FHIPEP 394 kgvevaegelkpdkllalnpgeveelegeetkepafglpavwieeeqreeaeaagytvvdpssvlathlsevikrhaaellgrqevkklldelkkeapk 492
                  + +v + ++  + +l+l+p+++   e   +  p    + +w+++e  ++a+++g+++ + ++ ++  l++v+ rh+ae++g+qe++ l+d+++k++++
  EHT97944.1 411 YQEPVFSFAIPENAYLLLEPDKQLGYE--VQPLPDGMGSICWLTAEAGKKAQSMGLAIAEGNQRITALLRQVLLRHMAEFIGVQEARYLMDAMEKRYSE 507
                 ******************888775433..34447777799*********************************************************** PP

                 HHHHHH.HHS-HHHHHHHHHHHHCTTXXXXXHHHHHHHHHHHTTTXXSHHHHHHHHHHHTHHHHHHHHH.TTSXEEEEEEXHHHHHHHHHHEEESSSE. CS
      FHIPEP 493 lveelvpkllslgelqkvLqnLlkErvsirdlrtIletlaeaakktkdvellteavRqaLkrqivqklaeedgelkvitldpeleqalaeslkqsegeg 591
                 lv+el+ ++l+++++++ Lq+L++E++sirdlrt++ tl+e+a+++kdv +lte+vR+aL+r+i ++l+ + + l+v+ + + +e+ ++es++q++  g
  EHT97944.1 508 LVKELQ-RQLPISKITETLQRLVAESISIRDLRTVFGTLIEWAPREKDVLMLTEYVRMALRRHILHRLQPNGEALRVLRVGEGIENLIRESVRQTS-MG 604
                 *****9.***************************************************************************************76.56 PP

                 .EEXXXHHHHHHHHHHHHHHH.CXXSXGGGXEEEEXCCCHHHHHHHHCTTXTTXEEEETCCCTTX CS
      FHIPEP 592 salalepelaeklleklkeavekleekgekpvllvspevRrllrkllerelpelaVlsynEieee 656
                 +++al+  +++++l+ ++ea++    ++ +  +++s ++Rr+lrk++e++l +++Vls++E+ e+
  EHT97944.1 605 TYAALSLGQSSRILSLIQEALA----EHGELNIVTSIDTRRFLRKITETRLFNVPVLSWQELGEN 665
                 8******************994....46678899***************************9886 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   2.3      0.48   2.9e+03     135     182 ..      27      69 ..       4      75 .. 0.44
   2 ?    9.9   0.0    0.0001       0.6     107     187 ..     265     340 ..     246     366 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.48
  FA_desaturase 135 wrllawlllllawlglwlalllllglalllwlvplllllfllalvlny 182
                     +l ++ll++++ ++l l+++ +      + + + +++ ++l l++ y
     EHT97944.1  27 IILALVLLIAIVMMILPLPTFMVD-----ILITVNIAFSVILLLIAIY 69 
                    222222222222222222222222.....4444444444444444344 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0001
  FA_desaturase 107 gwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllalvl..nyveHyg 187
                    g ++++v+g+ ++ la   + + + r+++ l++ +++l+       +++l +g+ +l ++++++++ l+++ +++    ++H  
     EHT97944.1 265 GIIVTRVPGEKKQNLASELTTQLG-RQPQALMLTAAVLI-------LFALIPGFPFLdFFVLAAFTSLPFFLFWRrsRHTQHDI 340
                    455555555444444444443333.33344444444443.......22222222333399999999999999998777777754 PP

>> DUF3583  Protein of unknown function (DUF3583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.4   0.00027       1.6      44     119 ..     482     568 ..     458     584 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00027
     DUF3583  44 vrqvvahvqaqE.reLLeavearyqrdyeeiagql..grLdavLqRirtggaLvkrmkr.......yA.sdqEvldmHgFlreALer 119
                  r++ +++  qE r L++a+e+ry +  +e+ +ql  +++   LqR+   ++ ++ +++       +A  +++vl + +++r AL+r
  EHT97944.1 482 LRHMAEFIGVQEaRYLMDAMEKRYSELVKELQRQLpiSKITETLQRLVAESISIRDLRTvfgtlieWApREKDVLMLTEYVRMALRR 568
                 47788999999967899*****************8557999*****98888887777642222222453477788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4728.42
//
Query:       EHT97945.1  [L=70]
Description: secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 511.19
//
Query:       EHT97946.1  [L=327]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-07   30.5  13.3    5.7e-07   30.0   9.5    2.8  2  HrpJ      HrpJ-like domain
    0.00062   19.8   0.1    0.00062   19.8   0.1    2.2  2  TyeA      TyeA
  ------ inclusion threshold ------
      0.044   13.5   0.4      0.044   13.5   0.4    2.3  2  Cas9-BH   Bridge helix of CRISPR-associated endonuclease Cas9
      0.053   13.8   0.0       0.18   12.0   0.0    1.9  1  DUF5071   Domain of unknown function (DUF5071)
      0.098   12.6   0.7       0.38   10.7   0.2    2.3  2  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   9.5   1.6e-10   5.7e-07       2     165 ..      45     189 ..      44     190 .. 0.87
   2 ?   -1.0   0.1      0.52   1.9e+03      46      77 ..     290     324 ..     277     325 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.6e-10
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHCT-TT-HHHHHHHHS-TT..--HHHHHHHHHHH--SHHHHHHHHHHHHHHS-GGGHHHHH CS
        HrpJ   2 faetseekskaLaqrkrsdakkseaekleelldllekvldleaeeklkeLrkllksgqlsssaqllalleslfgDpsdqllaLrallrkgrplsaelke 100
                 + +t+e +++aL+ r +  ++++ +e+le++++ l ++ + +++e+++ + ++l++    s+++l ++l          +++L  ll +  + + ++++
  EHT97946.1  45 LIATLEDMGMALSGRFKDLQQADLKERLEQRQQALLRMVQ-RMQEQADGIPTQLTQ--PHSGSSLGQQLLG--------VAVL--LLAE--KPNSKRRK 128
                 5689**********************************97.57889********75..5999999997754........3444..4455..56667788 PP

                 HHHHHHHHHHHHHTHHHHHHHCTHHHHHHHHC.CCTS-HHHHHHHHHHHHTS-.--HHHHHHHHHCC CS
        HrpJ 101 lleqaleeLeqekgkeiraGiNialaaklfsq.tdqlslqaLRdlYrqavsdd.qslsalyealler 165
                 +l + l+eL++e+g+ei      +l+  l+ + + ++ l+++ +l +qa  ++  sl+++++++ ++
  EHT97946.1 129 ALSEKLAELMSEQGWEI------SLFGMLELGqVSKGALAQINRLFQQAMDEEvTSLAEWFQRIMNW 189
                 8888*************......9999999988*****************9999*********9987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.52
                 -HHHHHHHHS-TT.....--HHHHHHHHHHH--SH CS
        HrpJ  46 eklkeLrkllksg...qlsssaqllalleslfgDp 77 
                 ++l++L +l+  +    +++ +q+la+l+ + gD 
  EHT97946.1 290 QHLDALFSLMPEAcfnDEDQREQILAVLRGMKGDR 324
                 56666666666666655677889999999998886 PP

>> TyeA  TyeA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.6       3.7   1.3e+04      60      71 ..      74      86 ..      72      90 .. 0.55
   2 !   19.8   0.1   1.7e-07   0.00062       8      69 ..     258     318 ..     252     327 .] 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
                HHH.HHHHHHHHH CS
        TyeA 60 qRq.klLaaaqeA 71
                qRq  lL ++q  
  EHT97946.1 74 QRQqALLRMVQRM 86
                5541467777754 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.7e-07
                 HHHHH-----HHHHH.HHHHCT--SSTTT--HHHHHH--TGGGS-GGGSS-HHHHHHHHHHHH CS
        TyeA   8 vaLkeekwvgpseie.kiaeqlgvpaiekqilFlrelkellrelPlkvFadeeqRqklLaaaq 69 
                 +++++e w+  + ++ ++a+++    + +  ++l+ l++l+  +P   F+de+qR+++La+ +
  EHT97946.1 258 IEMTNESWLFDEWLApRLAQRAASVRLYN--RLLQHLDALFSLMPEACFNDEDQREQILAVLR 318
                 55666666655555423444443333333..589*************************9976 PP

>> Cas9-BH  Bridge helix of CRISPR-associated endonuclease Cas9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.2e-05     0.044      13      30 ..     185     208 ..     183     210 .. 0.81
   2 ?   -5.1   1.3         5   1.8e+04      17      22 ..     225     230 ..     225     233 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
                 H......HHHHHHHHHHHHHHHHH CS
     Cas9-BH  13 R......RReRLhlLqelFaeeik 30 
                 R      RR+RL+ L+ ++a+e +
  EHT97946.1 185 RimnwpdRRQRLKVLLRMMAFELS 208
                 5555555**************976 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 5
                 HHHHHH CS
     Cas9-BH  17 RLhlLq 22 
                 RL +L+
  EHT97946.1 225 RLRRLL 230
                 555554 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.1e-05      0.18      11      52 ..     160     202 ..     154     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.1e-05
                 THHHHTT--HHHHGGGHHHHHGGGS-.TTSTTHHHHHHHHHHT CS
     DUF5071  11 avrkLkelvaeelkplvpeLLeWlqD.lNwPiaspiaelLarf 52 
                 a++++++l ++ + + v  L eW+q  +NwP  ++ +++L r+
  EHT97946.1 160 ALAQINRLFQQAMDEEVTSLAEWFQRiMNWPDRRQRLKVLLRM 202
                 6778888999***************857******999999886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00011      0.38      20      48 ..      55      89 ..      31      90 .. 0.80
   2 ?   -1.7   0.0      0.76   2.7e+03      31      48 ..     154     171 ..     151     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                S......EEEHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 20 r......dltvgelarrlglsksavsrilkrLvaa 48
                       dl +++l +rl   ++a+ r+++r++++
  EHT97946.1 55 AlsgrfkDLQQADLKERLEQRQQALLRMVQRMQEQ 89
                144446689***********************997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.76
                 HTSSHHHHHHHHHHHHHT CS
      MarR_2  31 lglsksavsrilkrLvaa 48 
                  ++sk+a+ +i + +++a
  EHT97946.1 154 GQVSKGALAQINRLFQQA 171
                 589999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1168  (0.0651459); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2289.33
//
Query:       EHT97947.1  [L=224]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   14.5   5.9       0.82    9.5   5.8    2.1  1  HrpE      HrpE/YscL/FliH and V-type ATPase subunit E


Domain annotation for each model (and alignments):
>> HrpE  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.8   4.6e-05      0.82      27     147 ..      47     167 ..       5     175 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 4.6e-05
        HrpE  27 aeslrarellaeArlqAeqllaqarekaeellevaveqAeaqFWeqAn..alLrglqqeRealeeqlltaveqLLsdalarlLdetplaeRasALlRqL 123
                 a+ ++a+ l+ +A++     l+  r++  ++ +  +   +   W       lL++  qeR+ l   +  ++ + +++ l+   ++ p  +   A l   
  EHT97947.1  47 AARRKAEGLIRQAKKNCRC-LEASRQRESRVSQRDTLRRLEVRWLRKHviRLLGDEAQERA-LVSAVSGRIHHCIEQVLSVWFEQQPPDKTLCARLALQ 143
                 2333444444455444433.23333333333333333333333432221134444444443.3334445555555555555556666666666777666 PP

        HrpE 124 lksqqgearatLycHPeaaadvaa 147
                 +++  +e++ tL+cHP+ ++++++
  EHT97947.1 144 AEQMANEGVLTLQCHPDLQQSMRE 167
                 78889************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1731.07
//
Query:       EHT97948.1  [L=121]
Description: hypothetical protein CKS_4587 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-25   90.5   0.8    1.4e-25   90.2   0.8    1.1  1  T3SS_LEE_assoc  Type III secretion system subunit


Domain annotation for each model (and alignments):
>> T3SS_LEE_assoc  Type III secretion system subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.8   7.6e-30   1.4e-25      68     163 .]       2      95 ..       1      95 [. 0.98

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 7.6e-30
  T3SS_LEE_assoc  68 lrlaerlealalalGLlalecsdyllLkkYRqalsqlLdeaqikqLlalaeyparaqaklppdqlveaAlrlgtallervaseeailralsillP 162
                     ++la+rl+a+ala GLl+l c+dy+lL+ YR+ l +lLd+  i+qL++l  +++++ a ++p q ve Al+lgta+l+r+a+++++l+al i+l 
      EHT97948.1   2 VQLAPRLQAFALATGLLVLGCNDYFLLPDYRRELLHLLDDGLIWQLFGL--CQGNHSALFSPTQTVEIALQLGTAVLTRAAQNDPVLHALLITLA 94 
                     899**********************************************..99****************************************98 PP

  T3SS_LEE_assoc 163 P 163
                     P
      EHT97948.1  95 P 95 
                     7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 996.04
//
Query:       EHT97949.1  [L=239]
Description: secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-22   78.9   0.0    6.1e-22   78.2   0.0    1.2  1  YscJ_FliF  Secretory protein of YscJ/FliF family


Domain annotation for each model (and alignments):
>> YscJ_FliF  Secretory protein of YscJ/FliF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   3.4e-26   6.1e-22       6     189 ..       6     187 ..       3     191 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 3.4e-26
   YscJ_FliF   6 iaaivvlvlwlsrpeyevLysnlsekdaaeivekLdeegipyklsd..dggtilVpedqvsearlklaseglpksgssvgfelfdkkssfgtTdfeeqv 102
                 +a+i+ l+l+l+    ++Lys l e+da+++++ L +++i+   +   +g t+ V+++q+ +a  +l  +g+p+++  v  e +   +++ ++ +eeq+
  EHT97949.1   6 LALILGLALLLTGC-RVELYSALPEDDANQMLAILMQNHIDADKQPeaGGVTLRVEQSQFINAVELLRLNGFPRHS-YVSAETMFPPNQLVVSPAEEQQ 102
                 57788888888888.889*********************976555422799**********************998.677766665888********** PP

   YscJ_FliF 103 kyqralegeLartiesldgVesArVhlalPeksvfvreqkepsAsVvlklkpgrelseeqvkaIvnlVasaVpglkpenVtvvDqkg 189
                 k     e++++r ++++dgV +A+V++a    +        +s++V++k++p+ +l+   v+ I nlV +++p +++e++ +++q  
  EHT97949.1 103 KIVFLNEQRIERMLSQMDGVIHADVTIAYGSAND-DGAVGAASVAVFIKYSPQVNLEAFRVQ-ISNLVEKSIPSVQKEHIGILMQPA 187
                 *****************************96332.235678999******************.*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2040.03
//
Query:       EHT97950.1  [L=91]
Description: putative type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-06   27.5   0.6    5.2e-06   27.0   0.6    1.4  1  T3SS_basalb_I  Type III secretion basal body protein I, YscI,


Domain annotation for each model (and alignments):
>> T3SS_basalb_I  Type III secretion basal body protein I, YscI, HrpB, PscI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.6   2.9e-10   5.2e-06      57      95 ..      52      90 ..      30      91 .] 0.91

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.9e-10
  T3SS_basalb_I 57 dpadllkaqmsLsqatlqeeliaKvVgkatQnldkLlkl 95
                    p ++l  q +   at+ ++l aKvVg+ +Q+++kL+++
     EHT97950.1 52 APYQMLVQQATTLGATVGVDLGAKVVGAVSQSVNKLVNM 90
                   57899999999999***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 807.74
//
Query:       EHT97951.1  [L=71]
Description: putative type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-22   77.6   0.8    7.6e-22   77.5   0.8    1.0  1  DUF1039   Protein of unknown function (DUF1039)


Domain annotation for each model (and alignments):
>> DUF1039  Protein of unknown function (DUF1039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.8   4.2e-26   7.6e-22       1      62 [.       6      67 ..       6      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 4.2e-26
     DUF1039  1 lAavNHgllkeahailnaLPllipDeelrlvceAlLlfGLgetakAtalLadlsseeAqvLr 62
                +A++NHgl  +++ail+aLPll+++++l++ c A+Ll+GL+e + A++ Lad+ ++eA++ +
  EHT97951.1  6 FAGINHGLQRQVRAILPALPLLVENTSLQALCRAVLLAGLNESVLARQALADVALPEAETVK 67
                8*********************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 625.23
//
Query:       EHT97952.1  [L=71]
Description: secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-24   84.2   1.5    5.7e-24   84.1   1.5    1.0  1  T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, Ep


Domain annotation for each model (and alignments):
>> T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   1.5   3.2e-28   5.7e-24       2      71 .]       4      71 .]       3      71 .] 0.98

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 3.2e-28
                   HHHHHHHHCCTHHHHHHHHHHHHHHHHSTTXHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHTTT CS
  T3SS_needle_F  2 dsvasalsqkvskaekelqdalealkadpsdPaaLakvQfklqqYsvfinaqStavKaikDilqgIiqki 71
                   ++++++ls+ +++++++++ ++++   d+s+P+a++k+Qf++qqYs+fin++S+++K+ikD+l+gIi ki
     EHT97952.1  4 EQLVDSLSRLAHQSGQAIEGKMNSE--DISNPEAMLKAQFAVQQYSTFINYESAMIKTIKDMLSGIITKI 71
                   7999*********************..******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 610.10
//
Query:       EHT97953.1  [L=238]
Description: secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1791.10
//
Query:       EHT97954.1  [L=273]
Description: hypothetical protein CKS_4581 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2139.57
//
Query:       EHT97955.1  [L=93]
Description: hypothetical protein CKS_4580 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-08   34.2   0.1    5.3e-08   33.3   0.0    1.6  2  TPR_19    Tetratricopeptide repeat
    1.6e-07   30.9   0.5      0.012   15.7   0.0    2.2  2  TPR_2     Tetratricopeptide repeat
    3.3e-06   26.7   1.6      0.015   15.1   0.0    2.2  2  TPR_1     Tetratricopeptide repeat
    0.00013   22.0   0.1    0.00016   21.7   0.1    1.1  1  TPR_9     Tetratricopeptide repeat
    0.00045   20.4   0.1    0.00057   20.1   0.1    1.2  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.011   16.4   1.2       0.02   15.5   0.1    2.0  2  TPR_6     Tetratricopeptide repeat
      0.014   15.7   0.2       0.32   11.3   0.0    2.1  2  TPR_12    Tetratricopeptide repeat
      0.015   16.0   0.2        1.1   10.3   0.0    2.5  2  TPR_14    Tetratricopeptide repeat
      0.037   14.2   0.9      0.088   13.1   0.0    1.9  2  TPR_8     Tetratricopeptide repeat
      0.042   13.9   0.4        5.5    7.1   0.3    2.3  2  TPR_3     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0     3e-11   5.3e-08       1      64 [.      17      80 ..       4      82 .. 0.97
   2 ?   -2.3   0.1       3.7   6.7e+03      44      52 ..      84      92 ..      83      93 .] 0.64

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3e-11
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64
                l++++ y  A++++ +al  d  ++e  ++ A +l a+g++ eA+++L++++ +   d+ y+++
  EHT97955.1 17 LMMQKEYVLAMNYYGYALMLDVCHPEPVYQIAVCLKAMGEISEAREALQTALMMSYEDPSYSTV 80
                7899*******************************************************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.7
      TPR_19 44 AealLdalp 52
                Ae++L++l+
  EHT97955.1 84 AEQMLSQLL 92
                667776664 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.5   3.4e-05      0.06       2      31 ..       8      37 ..       7      37 .. 0.95
   2 !   15.7   0.0   6.6e-06     0.012       5      30 ..      45      70 ..      41      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleld 31
                +a+ +l+ +++ +++y  A +++  Al ld
  EHT97955.1  8 RAHIALAGVLMMQKEYVLAMNYYGYALMLD 37
                79*************************997 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.6e-06
       TPR_2  5 ynlGlayyklgdyeeAleafekAlel 30
                y+++ ++ ++g+  eA+ea++ Al  
  EHT97955.1 45 YQIAVCLKAMGEISEAREALQTALMM 70
                899********************975 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.5   0.00022      0.39       2      31 ..       8      37 ..       7      37 .. 0.92
   2 !   15.1   0.0   8.5e-06     0.015       5      28 ..      45      68 ..      44      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALeln 31
                +a+  l+ +++ +++y  A  yy  AL l+
  EHT97955.1  8 RAHIALAGVLMMQKEYVLAMNYYGYALMLD 37
                78999999***************9999887 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 8.5e-06
                HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  5 ynlGnayfklgkydeAleyyekAL 28
                y++++++  +g+  eA e+ + AL
  EHT97955.1 45 YQIAVCLKAMGEISEAREALQTAL 68
                899********************9 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1     9e-08   0.00016       4      69 ..      16      81 ..      13      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9e-08
       TPR_9  4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeair 69
                +++ ++++  a+ ++   l+l+  +pe ++  +++l  +G +s+A+++L+++l ++ ++p   ++r
  EHT97955.1 16 VLMMQKEYVLAMNYYGYALMLDVCHPEPVYQIAVCLKAMGEISEAREALQTALMMSYEDPSYSTVR 81
                5677889999*******************************************8887777666655 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.2e-07   0.00057      25      81 ..       9      66 ..       1      67 [. 0.91

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.2e-07
                HHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3 25 dayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81
                +  +lA +l  +++y  A++++  a  l+  +++  y +A cl +++++ eA+ aL+ 
  EHT97955.1  9 AHIALAGVLMMQKEYVLAMNYYGYAlMLDVCHPEPVYQIAVCLKAMGEISEAREALQT 66
                55679**************************************************985 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.6   4.7e+03      15      23 ..      22      30 ..      12      33 .. 0.62
   2 ?   15.5   0.1   1.1e-05      0.02       4      26 ..      45      67 ..      44      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.6
                HHHHHHHHH CS
       TPR_6 15 dtdkAleal 23
                ++  A+ ++
  EHT97955.1 22 EYVLAMNYY 30
                555666655 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdkAlealerl 26
                y++a +++++g+ ++A+eal+  
  EHT97955.1 45 YQIAVCLKAMGEISEAREALQTA 67
                9*******************975 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.082   1.5e+02       6      26 ..      10      30 ..       2      36 .. 0.64
   2 ?   11.3   0.0   0.00018      0.32       8      30 ..      46      68 ..      43      86 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.082
      TPR_12  6 lnnlaavlrrlgrydeAlell 26
                +  la vl+ +++y  A  ++
  EHT97955.1 10 HIALAGVLMMQKEYVLAMNYY 30
                335777777777776665554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00018
      TPR_12  8 nlaavlrrlgrydeAlellekal 30
                ++a++l ++g+  eA+e l++al
  EHT97955.1 46 QIAVCLKAMGEISEAREALQTAL 68
                56666666666666666666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.071   1.3e+02       1      21 [.       7      27 ..       2      31 .. 0.57
   2 ?   10.3   0.0    0.0006       1.1       2      35 ..      42      78 ..      41      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.071
      TPR_14  1 peallalaeallalGdpdeAi 21
                ++a+ ala +l+ + ++  A+
  EHT97955.1  7 WRAHIALAGVLMMQKEYVLAM 27
                345556666666666655555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0006
      TPR_14  2 eallalaeallalGdpdeAiallrrala...laPdda 35
                e  +++a  l a G+  eA+++l+ al     +P+  
  EHT97955.1 42 EPVYQIAVCLKAMGEISEAREALQTALMmsyEDPSYS 78
                55688899999***************97555555555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.3   2.3e+03       8      25 ..      14      31 ..       8      37 .. 0.59
   2 ?   13.1   0.0   4.9e-05     0.088       5      31 ..      45      71 ..      42      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
                HHHHHHTT-HHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyye 25
                + +++ +++y  A+ yy 
  EHT97955.1 14 AGVLMMQKEYVLAMNYYG 31
                555555566667788875 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.9e-05
                HHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8  5 ynlgsiylklgdyeeAkeyyekaleld 31
                y+++ +++ +g++ eA e+++ al ++
  EHT97955.1 45 YQIAVCLKAMGEISEAREALQTALMMS 71
                89*********************9886 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.3    0.0031       5.5       7      33 ..      13      37 ..      11      37 .. 0.83
   2 ?    4.5   0.0      0.02        36      14      25 ..      54      65 ..      53      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0031
                HHHHHHHTT-HHHHHHH..HHHHHHH- CS
       TPR_3  7 yAaefynkkkyqeArelfsYallaild 33
                +A ++ ++k+y  A ++  Y+++  ld
  EHT97955.1 13 LAGVLMMQKEYVLAMNY--YGYALMLD 37
                5666779**********..99998775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
                TT-HHHHHHH.. CS
       TPR_3 14 kkkyqeArelfs 25
                +++++eAre+++
  EHT97955.1 54 MGEISEAREALQ 65
                899*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 778.81
//
Query:       EHT97956.1  [L=51]
Description: hypothetical protein CKS_4579 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0009   19.0   0.1      0.015   15.1   0.1    2.1  2  TPR_1     Tetratricopeptide repeat
     0.0038   17.2   1.2      0.015   15.3   0.7    1.9  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.053   14.2   0.3      0.095   13.4   0.4    1.4  2  TPR_16    Tetratricopeptide repeat
       0.13   12.4   0.2       0.17   12.0   0.2    1.1  1  P68HR     P68HR (NUC004) repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.032   1.5e+02      25      33 ..      17      25 ..      16      26 .. 0.87
   2 !   15.1   0.1   3.4e-06     0.015       5      25 ..      28      48 ..      24      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.032
                HHHHHHSTT CS
       TPR_1 25 ekALelnPn 33
                +kALe  P+
  EHT97956.1 17 KKALEFSPD 25
                79***9997 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.4e-06
                HHHHHHHHHTT-HHHHHHHHH CS
       TPR_1  5 ynlGnayfklgkydeAleyye 25
                y +G+a  ++ +yd Al +++
  EHT97956.1 28 YARGYAAWQQRDYDRALVDFS 48
                88****************995 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.12   5.4e+02      25      33 ..      17      25 ..      15      26 .. 0.84
   2 !   15.3   0.7   3.4e-06     0.015       3      24 ..      26      47 ..      24      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.12
       TPR_2 25 ekAleldPn 33
                +kAle  P+
  EHT97956.1 17 KKALEFSPD 25
                799*99997 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.4e-06
       TPR_2  3 alynlGlayyklgdyeeAleaf 24
                  y++G+a++++ dy++Al +f
  EHT97956.1 26 EIYARGYAAWQQRDYDRALVDF 47
                569***************9877 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.6   1.2e+04      58      66 ..      17      25 ..      12      26 .. 0.68
   2 ?   13.4   0.4   2.1e-05     0.095       1      17 [.      28      44 ..      28      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.6
      TPR_16 58 raalraapd 66
                ++al+ +pd
  EHT97956.1 17 KKALEFSPD 25
                566777776 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.1e-05
      TPR_16  1 lalaraalragdyddAa 17
                +a+++aa++++dyd+A+
  EHT97956.1 28 YARGYAAWQQRDYDRAL 44
                78999999999999997 PP

>> P68HR  P68HR (NUC004) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   3.9e-05      0.17      11      27 ..      22      40 ..      21      41 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.9e-05
       P68HR 11 grprgnYqnGYdS..kqqf 27
                + p + Y +GY++  ++++
  EHT97956.1 22 FSPDEIYARGYAAwqQRDY 40
                78999********888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 393.90
//
Query:       EHT97957.1  [L=143]
Description: secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1176.37
//
Query:       EHT97958.1  [L=202]
Description: putative type III secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-23   81.9   4.6    1.4e-11   44.8   0.4    2.1  2  EspB      Enterobacterial EspB protein
  ------ inclusion threshold ------
       0.12   12.8   1.4       0.67   10.4   0.3    2.1  2  KELK      KELK-motif containing domain of MRCK Ser/Thr protei


Domain annotation for each model (and alignments):
>> EspB  Enterobacterial EspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.4   1.6e-15   1.4e-11       2      83 ..      46     127 ..      45     130 .. 0.85
   2 !   40.9   0.8   2.4e-14   2.2e-10     125     201 ..     124     200 ..     119     202 .] 0.94

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.6e-15
        EspB   2 isellvevgkLvrklrtvlqdylqrqlalsyeiQkaafqtqkkaIeekkAgAtaallegvlsivlGilgsaaaiasgaieel 83 
                 ++e++ ++  L+++lr+++q y+q++++ls+ +  + fq   kaI++ +  A+a +++g++  +l + gs+++ a+  ++++
  EHT97958.1  46 FDEIWSKLLMLAKQLRDTMQFYNQKKQKLSWGLEINTFQQSVKAIDDSYDAAKAGAIGGMFAGALTVGGSFFGEAGMTVGNA 127
                 6899*********************************************777777888877777777777777766666555 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 2.4e-14
        EspB 125 agetvgklqqgiasvaaaaktrneqrakavedlqesnleeykktvresqDkiasvlqdlrstardlndlinrvaqSa 201
                  g+ +g++++gi+s ++  +tr+++ +ka+++lq++ +++y kt++ +  k+ +++++++++ r+l+++  +v  ++
  EHT97958.1 124 VGNAMGQVANGIGSWVSGSETRKADVEKAIAELQNKGAQSYAKTLDDTLMKAREIMRQMMEMGRNLVEVFSQVLRAI 200
                 4788999**************************************************************99998876 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.058   5.2e+02      33      42 ..      56      65 ..      38      90 .. 0.62
   2 ?   10.4   0.3   7.5e-05      0.67      15      67 ..     145     198 ..     139     202 .] 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.058
        KELK 33 qkkeLkdais 42
                 +k+L+d+++
  EHT97958.1 56 LAKQLRDTMQ 65
                4455555443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.5e-05
        KELK  15 EkeelqkelaeaqEr.lksqkkeLkdaisqrklamqefsevneklselrsqkqk 67 
                  k +++k +ae+q++  +s +k L d++ + +  m ++ e+   l e+ sq+ +
  EHT97958.1 145 RKADVEKAIAELQNKgAQSYAKTLDDTLMKAREIMRQMMEMGRNLVEVFSQVLR 198
                 6899**********94477899***************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      853  (0.0475766); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1612.09
//
Query:       EHT97959.1  [L=394]
Description: putative type III secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-52  176.8  43.1    1.1e-50  173.0  43.1    1.9  1  SseC             Secretion system effector C (SseC) like fami
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.073   13.0   0.2    2.0  1  Ribosomal_S8     Ribosomal protein S8
       0.03   14.1   0.1      0.088   12.6   0.1    1.7  1  Alpha-E          A predicted alpha-helical domain with a cons
        0.2   12.0   2.4         16    5.9   0.0    3.4  3  Ribosomal_L5     Ribosomal protein L5
       0.26   10.7   2.8       0.94    8.9   0.0    2.7  4  IcmF-related     Intracellular multiplication and human macro
        2.8    8.4  12.8        7.1    7.1   2.1    3.8  5  DUF2564          Protein of unknown function (DUF2564)
          3    8.5   7.8         32    5.2   0.3    4.0  3  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein


Domain annotation for each model (and alignments):
>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0  43.1   4.4e-54   1.1e-50       1     317 []       2     392 ..       2     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 173.0 bits;  conditional E-value: 4.4e-54
        SseC   1 LlaklreLtskaaedsleskqkllkelqekqeklrqeqveeireqikka...eekakkaGiigkIfGwilaivsvvagalkvgaslll.aavgvAgglm 95 
                 L +++++L+++++++++++ +++l++++e+q +lr++qv+e++eqi+ka   +++a+kaGi++++f+wi+  v+ v+g+lk+++++l+  ++ +A g++
  EHT97959.1   2 LSMMMTQLVLNVSGNNANALCQQLERATEVQAALRNKQVAEYQEQINKAieqADQARKAGIFSAVFDWIISGVEAVVGVLKMAEGVLTaDPLAIADGAA 100
                 78************************************************************************************************* PP

        SseC  96 daalgiadevvaaattkslideem...qpimdvvdkaqlageivgavvaavavvaavvavgsaakgaaaavksg.aaklaeavaeaigkaikkaaekag 190
                 ++++g a++v+a a+t+ l ++     ++i+ +++++q+a+e v+ +++ ++++++++a+++++k+++ +++sg +++l +av +++++ +k +aekag
  EHT97959.1 101 YLSAGGAGMVKAGAETALLLGANKsvcNDIINAAGTVQTACEGVALALDIMQIGRGISAARAITKATEEVLDSGvGKALIDAVVKGAESELKTLAEKAG 199
                 *********************99999************************************************************************* PP

        SseC 191 kevaeqvskqvlnelakkatkva...................................................kavkegv...........vasavak 227
                 +ev+  ++k +  +l ++  +v+                                                         v            ++ ++k
  EHT97959.1 200 QEVSRVMGKDFGMALEREMVEVGdmaieaaaheleaesnmvrgisksftregvaklvemaiegagkdllkkseeV-----VakklldailqkLRRSIVK 293
                 **********77777777777777777777999999999999999988887788777777777777777444440.....2444444445553333333 PP

        SseC 228 alikavvv.........aeggngiaqGainiqrAklqkkaaqlqAdtkllravleqlqkvldeaaeeikellesiqellksmsqaisqkgdtlqqiaas 317
                  +i++++          + g+n i+   + +++Aklq++++ l++ +    ++  + ++ ++ +++++ e  +  +++l  +s+ i ++g +l++ia +
  EHT97959.1 294 SVISDCAHkallitratVGGANRISASIVAVTNAKLQREIERLIVQQGYIDFMQNWTEDRKKTQQKRLNEAYQDGANALRIASKIIDNSGTVLANIAGQ 392
                 33333333666669999999****************************************************************************975 PP

>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.9e-05     0.073      12      70 ..     313     373 ..     306     391 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                   HHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEE.CCC..CCCEEEEE-BSSS-SBSSS CS
  Ribosomal_S8  12 NaekakkeevevpasklkeeilkvLkeeGyikdfeve.eek..kkkikielkynkkkksvik 70 
                    a++ + + v v  +kl++ei +++ ++Gyi+ ++   e++  +++ +++  y++ + ++++
    EHT97959.1 313 GANRISASIVAVTNAKLQREIERLIVQQGYIDFMQNWtEDRkkTQQKRLNEAYQD-GANALR 373
                   588889999**********************877766333333333445555544.233332 PP

>> Alpha-E  A predicted alpha-helical domain with a conserved ER motif.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.4e-05     0.088      72     136 ..      14      81 ..       6      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.4e-05
     Alpha-E  72 deenpgSiasclraarenaravRerlssemWevlnelylelkekl.sel..eflervkerlaafsGla 136
                 + +n++ + + l++a e   a+R++  +e  e++n++  ++ ++  ++   ++++++++ + a+ G++
  EHT97959.1  14 SGNNANALCQQLERATEVQAALRNKQVAEYQEQINKAIEQADQARkAGIfsAVFDWIISGVEAVVGVL 81 
                 56899*******************************888888533344489************99986 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.019        49      12      38 ..     170     195 ..     163     204 .. 0.89
   2 ?   -2.8   0.1       3.2   8.3e+03      15      34 ..     258     275 ..     255     287 .. 0.62
   3 ?    5.9   0.0    0.0063        16      24      42 ..     376     394 .]     361     394 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.019
                   EEEEE-SSSSSCHHHHHCCHHHHCCCH CS
  Ribosomal_L5  12 vinmgvGeagedkkllekaakeLaeIt 38 
                   v+ +gvG+a  d +++++a++eL++++
    EHT97959.1 170 VLDSGVGKALID-AVVKGAESELKTLA 195
                   7889*******9.99*******99987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
                   EE-SSSSSCHHHHHCCHHHH CS
  Ribosomal_L5  15 mgvGeagedkkllekaakeL 34 
                   m +  ag+d  ll+k +++ 
    EHT97959.1 258 MAIEGAGKD--LLKKSEEVV 275
                   666666666..666666553 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0063
                   HHHHHCCHHHHCCCHSS-- CS
  Ribosomal_L5  24 kkllekaakeLaeItGQkP 42 
                   +k++++   +La I+GQ++
    EHT97959.1 376 SKIIDNSGTVLANIAGQRA 394
                   799**************86 PP

>> IcmF-related  Intracellular multiplication and human macrophage-killing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       2.1   5.4e+03     277     277 ..      43      43 ..      17      59 .. 0.47
   2 ?    0.1   0.0      0.17   4.5e+02      29      71 ..     156     198 ..     151     206 .. 0.86
   3 ?    8.9   0.0   0.00037      0.94     176     237 ..     217     278 ..     209     298 .. 0.76
   4 ?   -1.5   0.1      0.55   1.4e+03      97     130 ..     338     370 ..     325     385 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
  IcmF-related 277 f 277
                   +
    EHT97959.1  43 Y 43 
                   1 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
  IcmF-related  29 GLyqgdkleaalraaYraalrqlllpplaarleaeLravaaap 71 
                   G++  +++ +a++++ + ++ + l +++++  e+eL+++a+++
    EHT97959.1 156 GISAARAITKATEEVLDSGVGKALIDAVVKGAESELKTLAEKA 198
                   77778899999**************************987665 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00037
  IcmF-related 176 ppvtladlvGpdaaevftrsspltegvpglfTrkGyeevflkaldeaaeklleeddWVlgdl 237
                   + v++ d++ + aa  ++++s++ +g++  fTr+G  ++++ a++ a ++ll++++ V+ ++
    EHT97959.1 217 EMVEVGDMAIEAAAHELEAESNMVRGISKSFTREGVAKLVEMAIEGAGKDLLKKSEEVVAKK 278
                   5677888885555555566667888**************************99998888833 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.55
  IcmF-related  97 ladwltrdweralegergeqererllehldalla 130
                   +++    +++++ e+++++q+ +rl+e ++   +
    EHT97959.1 338 VQQGYIDFMQNWTEDRKKTQQ-KRLNEAYQDGAN 370
                   555555677777777777766.777777776554 PP

>> DUF2564  Protein of unknown function (DUF2564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.1    0.0028       7.1      42      78 ..      22      58 ..       3      59 .. 0.85
   2 ?   -1.6   0.0       1.4   3.7e+03      15      34 ..     159     178 ..     148     206 .. 0.57
   3 ?    6.7   0.1    0.0038       9.8      24      67 ..     212     255 ..     202     260 .. 0.87
   4 ?   -0.4   0.0      0.62   1.6e+03       6      17 ..     254     265 ..     252     270 .. 0.86
   5 ?   -2.3   0.1       2.4   6.3e+03      37      64 ..     323     350 ..     313     366 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0028
     DUF2564 42 reqlssaeehatgvdeeFleeseqlldkaehQLdEak 78
                 +ql++a+e+++ + ++ ++e+++ ++ka +Q d a+
  EHT97959.1 22 CQQLERATEVQAALRNKQVAEYQEQINKAIEQADQAR 58
                47******************************99998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
     DUF2564  15 AqkmvGqATmsmdpdqlesA 34 
                 A +++ +AT +     + +A
  EHT97959.1 159 AARAITKATEEVLDSGVGKA 178
                 44555666655444444433 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0038
     DUF2564  24 msmdpdqlesAtqAiedAreqlssaeehatgvdeeFleeseqll 67 
                 m ++++++e    Aie+A ++l+   +   g+++ F +e  ++l
  EHT97959.1 212 MALEREMVEVGDMAIEAAAHELEAESNMVRGISKSFTREGVAKL 255
                 678999******************************98766665 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.62
     DUF2564   6 kqvelavetAqk 17 
                 k ve+a+e A k
  EHT97959.1 254 KLVEMAIEGAGK 265
                 679*****9977 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.4
     DUF2564  37 AiedAreqlssaeehatgvdeeFleese 64 
                 A+ +A+ q +  +   ++   +F+++  
  EHT97959.1 323 AVTNAKLQREIERLIVQQGYIDFMQNWT 350
                 6777775544433333333334444443 PP

>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3     0.012        32      29      56 ..       2      29 ..       1      39 [. 0.87
   2 ?    3.6   0.3     0.038        96      41      64 ..      36      59 ..      29      67 .. 0.81
   3 ?    1.7   0.1      0.15   3.8e+02      27      68 ..     234     276 ..     223     292 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.012
  Anti-adapt_IraP 29 lelllsallltlskekvqeliesvekai 56
                     l++++++l+l++s ++ + l ++ e a 
       EHT97959.1  2 LSMMMTQLVLNVSGNNANALCQQLERAT 29
                     79*********************99885 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.038
  Anti-adapt_IraP 41 skekvqeliesvekainsalessd 64
                      +++v e  e+++kai++a+++++
       EHT97959.1 36 RNKQVAEYQEQINKAIEQADQARK 59
                     566999999**********99855 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.15
  Anti-adapt_IraP  27 ealelllsallltlskekvqelie.svekainsalessdevlk 68 
                      ea + +++ + +++  e+v +l+e ++e+a ++ l++s+ev+ 
       EHT97959.1 234 EAESNMVRGISKSFTREGVAKLVEmAIEGAGKDLLKKSEEVVA 276
                      5555566666666666666666653466666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1569  (0.0875119); expected 358.6 (0.02)
Passed bias filter:                      774  (0.0431703); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 2943.59
//
Query:       EHT97960.1  [L=169]
Description: secretion system chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00073   19.5  13.6      0.044   13.9   0.3    3.3  3  TPR_2     Tetratricopeptide repeat
     0.0065   16.7   3.5       0.28   11.5   0.1    2.7  2  TPR_12    Tetratricopeptide repeat
     0.0085   15.9   7.5       0.12   12.2   0.6    2.5  2  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.026   15.1   8.7        3.9    8.2   0.0    2.4  2  TPR_16    Tetratricopeptide repeat
      0.086   13.7   7.5        1.4    9.9   0.9    3.3  4  TPR_14    Tetratricopeptide repeat
      0.097   12.7   4.3       0.25   11.4   0.1    2.8  2  TPR_3     Tetratricopeptide repeat
          1    9.5   3.3         13    6.1   0.0    3.1  3  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3     0.046   1.2e+02       3      24 ..      36      57 ..      34      60 .. 0.87
   2 !    9.6   1.9   0.00042       1.1       2      30 ..      69      97 ..      68      98 .. 0.95
   3 !   13.9   0.3   1.7e-05     0.044       7      28 ..     108     129 ..     106     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.046
       TPR_2  3 alynlGlayyklgdyeeAleaf 24
                +l + ++ ++++g+y  A++ f
  EHT97960.1 36 VLQRYARQLANAGEYGAAARIF 57
                6889999********9999877 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00042
       TPR_2  2 ealynlGlayyklgdyeeAleafekAlel 30
                e++++lG ++ +   + +A+ a+ +A ++
  EHT97960.1 69 EYWFELGACCQADAAWSDAIYAYGRAAKI 97
                89************************987 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.7e-05
       TPR_2   7 lGlayyklgdyeeAleafekAl 28 
                  G++y++ g++  A++af++Al
  EHT97960.1 108 AGECYLACGNFPLAAKAFQAAL 129
                 69*******************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.9     0.011        27      41      74 ..      64      97 ..      35     100 .. 0.74
   2 !   11.5   0.1   0.00011      0.28       8      44 ..     107     144 ..      98     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
      TPR_12 41 hpltattlrnLgrlyralgryeeAlelleealai 74
                 ++  ++ + Lg +++a   + +A++++ +a +i
  EHT97960.1 64 DAWSFEYWFELGACCQADAAWSDAIYAYGRAAKI 97
                5566667788899998888999999998888776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
      TPR_12   8 nlaavlrrlgrydeAlellekaleia.rrllGpdhplt 44 
                   ++++++ g++  A + +++al ++  + +G++h++ 
  EHT97960.1 107 AAGECYLACGNFPLAAKAFQAALLVCgVEHQGDNHENK 144
                 579***********************555599999875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   1.2    0.0027       6.9       2      30 ..      69      97 ..      68      98 .. 0.92
   2 !   12.2   0.6   4.7e-05      0.12       8      28 ..     109     129 ..     107     132 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0027
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALel 30
                + ++ lG++++    + +A+ +y +A ++
  EHT97960.1 69 EYWFELGACCQADAAWSDAIYAYGRAAKI 97
                67************************887 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.7e-05
                 HHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekAL 28 
                 G +y+  g++  A ++++ AL
  EHT97960.1 109 GECYLACGNFPLAAKAFQAAL 129
                 89******************9 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.6    0.0024       6.1       4      61 ..      41      96 ..      41     104 .. 0.84
   2 ?    8.2   0.0    0.0015       3.9       7      24 ..     112     129 ..     106     134 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
      TPR_16  4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraal 61
                ar +++ag+y +Aa+ ++ ++ +d       e +++lg ++ +   + +A+ a+ raa 
  EHT97960.1 41 ARQLANAGEYGAAARIFKVLTIYD---AWSFEYWFELGACCQADAAWSDAIyAYGRAAK 96
                5668899**********6555555...5599********************99999985 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0015
      TPR_16   7 alragdyddAaaaleaal 24 
                 +l+ g+++ Aa+a++aal
  EHT97960.1 112 YLACGNFPLAAKAFQAAL 129
                 444467777777777766 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.9   0.00056       1.4       3      42 ..      36      75 ..      34      77 .. 0.78
   2 ?   -0.4   0.1       1.1   2.9e+03       4      28 ..      71      95 ..      68     103 .. 0.58
   3 ?    6.3   0.0    0.0078        20       7      28 ..     108     129 ..     106     142 .. 0.89
   4 ?   -2.6   0.0       5.8   1.5e+04      21      34 ..     150     163 ..     146     165 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00056
      TPR_14  3 allalaeallalGdpdeAiallrralalaPddaeawllla 42
                +l+++a+ l+++G++ +A+++++ +   + ++ e+w++l+
  EHT97960.1 36 VLQRYARQLANAGEYGAAARIFKVLTIYDAWSFEYWFELG 75
                6899****************99866555556666666665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
      TPR_14  4 llalaeallalGdpdeAiallrral 28
                + +l++ + a   + +Ai ++ ra 
  EHT97960.1 71 WFELGACCQADAAWSDAIYAYGRAA 95
                5555555555555556655555554 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0078
      TPR_14   7 laeallalGdpdeAiallrral 28 
                 ++e +la G++  A++++++al
  EHT97960.1 108 AGECYLACGNFPLAAKAFQAAL 129
                 67889***************98 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 5.8
      TPR_14  21 iallrralalaPdd 34 
                 ++ +r+ l++  +d
  EHT97960.1 150 RRRARAGLSKTGED 163
                 55566777766555 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.6e-05      0.25       7      35 ..      40      66 ..      34      67 .. 0.92
   2 ?    1.5   1.0      0.12   3.2e+02       2      26 ..      69      91 ..      68      98 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.6e-05
                HHHHHHHTT-HHHHHHH..HHHHHHH-TT CS
       TPR_3  7 yAaefynkkkyqeArelfsYallaildke 35
                yA ++ n ++y  A+    +++l+i+d++
  EHT97960.1 40 YARQLANAGEYGAAARI--FKVLTIYDAW 66
                8999*************..99******98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
                HHHHHHHHHHHHTT-HHHHHHH..H CS
       TPR_3  2 dylysyAaefynkkkyqeArelfsY 26
                +y++ ++a ++     ++A+ +  Y
  EHT97960.1 69 EYWFELGACCQADAAWSDAIYA--Y 91
                7888888888865555555555..4 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.96   2.5e+03      11      23 ..      46      58 ..      37      60 .. 0.72
   2 ?    2.5   0.2     0.071   1.8e+02       3      28 ..      72      97 ..      71     103 .. 0.82
   3 ?    6.1   0.0    0.0049        13       4      26 ..     107     129 ..     106     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.96
       TPR_7 11 rlGdyeeAielye 23
                + G+y  A+++++
  EHT97960.1 46 NAGEYGAAARIFK 58
                4678888877775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.071
       TPR_7  3 lnLarlysrlGdyeeAielyeqsLal 28
                + L+ +++++  +++Ai  y ++  +
  EHT97960.1 72 FELGACCQADAAWSDAIYAYGRAAKI 97
                67999************888886655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0049
       TPR_7   4 nLarlysrlGdyeeAielyeqsL 26 
                 + +++y ++G++  A++ ++++L
  EHT97960.1 107 AAGECYLACGNFPLAAKAFQAAL 129
                 6799*****************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1289.27
//
Query:       EHT97961.1  [L=199]
Description: putative type III secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-52  178.0   3.3    1.9e-52  177.7   3.3    1.0  1  EspA         EspA-like secreted protein
  ------ inclusion threshold ------
       0.03   14.6   1.3       0.24   11.7   0.3    2.2  2  DUF948       Bacterial protein of unknown function (DUF948)
        7.7    7.1  11.9        1.1    9.9   1.8    2.8  3  Fil_haemagg  Haemagluttinin repeat


Domain annotation for each model (and alignments):
>> EspA  EspA-like secreted protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   3.3   3.2e-56   1.9e-52      29     180 ..      39     191 ..      14     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 3.2e-56
        EspA  29 l...lseaittleevmllltelsnakfaqmskkaevardaqekaNemdaviAdltkddpkskeelppdVieYlrengIlvenktiddylkkngqvGegk 124
                 +   ++ + ++l ++ l+l++ +na f +++  +++ar++q+++N+md+viAd++k d+k+++ +p++V++Y+r+ngIlv++++iddy++k g   +g 
  EHT97961.1  39 InnpFAYGFSVLDNLQLVLQKSANALFGKINTSTDRARNTQDMSNRMDEVIADAAKGDDKTRKPVPDEVVKYMRDNGILVDGMSIDDYISKHGG-TDG- 135
                 2466999************************************************************************************998.688. PP

        EspA 125 ldkgdLtavkasLesdsgrasDfvqQsQlklqkliqnynaavtlanslqsmnaelt 180
                 ldkg L+avka+L+++++r++D+++Q Ql +qk+ q+ na+vt++++l s++++l+
  EHT97961.1 136 LDKGSLQAVKAALDNSANRDTDLMTQGQLSIQKMTQEINAVVTQMTGLLSKWGDLL 191
                 ****************************************************9875 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.048   2.9e+02      40      73 ..      59      88 ..      44     107 .. 0.55
   2 ?   11.7   0.3   4.1e-05      0.24      27      67 ..     158     198 ..     143     199 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.048
      DUF948 40 kqvdpilkevedllakvnelledvneklekvdpl 73
                k ++++  ++++ ++ +++ ++d++++++   ++
  EHT97961.1 59 KSANALFGKINTSTDRARN-TQDMSNRMD---EV 88
                4444444444444444444.333333332...22 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.1e-05
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvnekl 67 
                 ++++ + +i++++++++++++++++ll+k  +ll+ + +k+
  EHT97961.1 158 LMTQGQLSIQKMTQEINAVVTQMTGLLSKWGDLLSMIAQKM 198
                 56677789***************************999997 PP

>> Fil_haemagg  Haemagluttinin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.8   0.00018       1.1      24      63 ..       2      41 ..       2      70 .. 0.89
   2 ?   -0.8   0.2      0.38   2.3e+03      47      69 ..      67      93 ..      51      96 .. 0.65
   3 ?    3.2   0.8     0.022   1.3e+02      44      76 ..     138     167 ..     129     179 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
  Fil_haemagg 24 ggnlsaqggltlaaagllnqggilqsggalvlraaqlidn 63
                 +gnls +   + +a+gl ++   l +g + +++ +q+i+n
   EHT97961.1  2 SGNLSVGHRFDFNASGLTTSNIKLGAGDDNTVADDQDINN 41
                 59*************************************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
  Fil_haemagg 47 lqsggalvlraaqlidng....lkisa 69
                  +++++ ++r +q+ +n+    +  +a
   EHT97961.1 67 KINTSTDRARNTQDMSNRmdevIADAA 93
                 456677777777887777766555555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.022
  Fil_haemagg  44 ggilqsggalvlraaqlidng...lkisaaGdLdnq 76 
                  +g+lq+  a      +l+++    + + ++G+L+ q
   EHT97961.1 138 KGSLQAVKA------ALDNSAnrdTDLMTQGQLSIQ 167
                  334433332......333333355777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1607.80
//
Query:       EHT97962.1  [L=82]
Description: hypothetical protein CKS_4573 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.17   12.1   0.0    1.2  1  T3SchapCesA  Type III secretion system filament chaperone Ces


Domain annotation for each model (and alignments):
>> T3SchapCesA  Type III secretion system filament chaperone CesA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.3e-06      0.17      27      58 ..      11      42 ..       2      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-06
  T3SchapCesA 27 iiaefdvvkesvnilsekaktdpqaaeklnkl 58
                   ++f  +k ++ +l  ++ tdp aa+kln l
   EHT97962.1 11 CYSNFTKLKMAMAELVARSATDPAAAKKLNDL 42
                 56789999**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1222  (0.0681577); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 633.02
//
Query:       EHT97963.1  [L=49]
Description: hypothetical protein CKS_4572 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-10   38.5   0.6      1e-09   38.4   0.6    1.1  1  T3SS_needle_E  Type III secretion system, cytoplasmic E compo


Domain annotation for each model (and alignments):
>> T3SS_needle_E  Type III secretion system, cytoplasmic E component of needle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.6   5.8e-14     1e-09      32      67 .]       3      38 ..       1      38 [. 0.97

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 5.8e-14
                   HHHCCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  T3SS_needle_E 32 qalsspqspeeYqqlqllaeAleaAeaIintltrry 67
                   q ++ p++ e+Yqq++ll+eA+ +Ae+Ii+ +++ry
     EHT97963.1  3 QSMKGPATQEQYQQFTLLLEAVIQAEDIIKVIAYRY 38
                   7899*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 354.28
//
Query:       EHT97964.1  [L=243]
Description: virulence protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-14   52.2   0.1    6.9e-14   51.9   0.1    1.0  1  Yop-YscD_ppl  Inner membrane component of T3SS, periplasmic d


Domain annotation for each model (and alignments):
>> Yop-YscD_ppl  Inner membrane component of T3SS, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   3.9e-18   6.9e-14      12     243 ..       3     230 ..       1     233 [. 0.85

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 3.9e-18
  Yop-YscD_ppl  12 dvsvesnkkegeplleGyvednhqrlalqnfldvhgisyrlelrtmeelrqGvefilqklGyhqikvsdgdqaGwlrltGevsdeaqkwnkiesllk 108
                   +v  +++ k+g   l Gy e+  +  +++  l + g+ y+ ++   ++l + v+ +l + Gy +i+   ++ +G + ++ ++    ++w  i++ l 
    EHT97964.1   3 QVAATWE-KNGTLRLSGYCEKSDRLQSVRLKLGAWGVLYQDNVECTDQLIRQVRDVLTQAGYDEIELT-SHAPGEISINADI-MMGKRWAGIQQQLT 96 
                   5555665.4567789****988777778889**********************************986.6789*********.7899*******996 PP

  Yop-YscD_ppl 109 rdvPGllgveskvriaGnqlkrldellekaeldkkltlktkgdrielrGqlddekttrfyrlqqvfrqefGnkPklvlvnvkklskn.delnfevra 204
                     +PGl  ++ +  +  +q++ l + l ++ l +k+ +++ g+   + G l+ ++ +++++l  ++rq+f    +l  +nv    ++ + +  ++ a
    EHT97964.1  97 -TIPGLKHLHIDN-LHETQINALIASLLQQRLAEKVSVTSVGQAFVISGVLNMNEQQSLNHLLAQLRQQFPG-IALSYQNVASSGEGiQRFPSPIAA 190
                   .6****9998774.55678888888888999***************************************43.3555566655544423355689** PP

  Yop-YscD_ppl 205 vslGkv.PyvvlknnlrypvGartenGlrieairrdaivv 243
                   +  G+   y++l++  r   G+++++G  + a++ +a+ +
    EHT97964.1 191 IVHGQQgLYLLLEDGERLRTGSQLPQGGEVVALTDAAVAL 230
                   ****8626*****************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1875.40
//
Query:       EHT97965.1  [L=505]
Description: putative outer membrane secretory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-33  113.4   2.6    1.6e-32  112.5   2.6    1.5  1  Secretin    Bacterial type II and III secretion system protei
    8.6e-18   64.5   0.0    8.1e-15   55.0   0.1    2.8  2  Secretin_N  Bacterial type II/III secretion system short doma


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   2.6   1.8e-36   1.6e-32       1     169 [.     339     498 ..     339     499 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 1.8e-36
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvte...dgsirlkidvevssiassqavtaegn 96 
                 ale++++a +ls+P+++tl+n +A+++ + +++ ++++++         a ++e++++g  L+vtP+      +++i+l++++++ + ++  +   + +
  EHT97965.1 339 ALEKNSHAYILSQPSVVTLNNIQAVLDKNITFYTKLQGDKV--------A-KLESITTGSLLRVTPRLLVeqgKQNIMLSLNIQDGQQNPPLS---QDE 425
                 79*********************************555554........2.399************8655324666*************9754...468 PP

    Secretin  97 svptisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPriv 169
                   p ++++e+ ++++++ g++l++GG+ qd++ + ++k+PlLgdiP++G+LF+++ ++++   +l++i++++v
  EHT97965.1 426 PLPEVQNSEIASQATLHPGQSLLLGGFKQDKQAQAQNKIPLLGDIPIIGHLFRNDFNQTHSVIRLFLIKATVV 498
                 99*********************************************************************98 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0012        11       2      77 ..     117     175 ..     116     179 .. 0.92
   2 !   55.0   0.1     9e-19   8.1e-15       2      81 ..     189     276 ..     188     277 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
                 EEEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHC CS
  Secretin_N   2 rvfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLD 77 
                 rv++L+  sa+    +Lr+                    +++++   +  p+ N + ++g p+  +ri ql++ LD
  EHT97965.1 117 RVITLNTLSASTFIRYLRKRD-----------------VPEKSSCEARTIPGFNVIDINGVPACTDRITQLASMLD 175
                 899999999999999999996.................5899999******************************9 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 9e-19
                 EEEE-SSS-HHH..............HHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSSS CS
  Secretin_N   2 rvfpLkyasaad..............lasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDvpra 81 
                  v+pLkya a d              ++s+Lr++  + ++++      ++s+a++++ ++++adpr N+++vr++  ++a +r+li +LD++++
  EHT97965.1 189 VVYPLKYATAVDdhyqyrdqnvvvpgIVSVLRDMSHNSAPTT------NSSSAATQGLPMFSADPRQNAVIVRDRSVNMAGYRKLIGELDRRPQ 276
                 59********************************98877665......67888888889********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3964.03
//
Query:       EHT97966.1  [L=125]
Description: secreted effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 949.98
//
Query:       EHT97967.1  [L=918]
Description: secretion system regulator sensor component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-22   79.5   0.0    4.1e-22   78.5   0.0    1.6  1  Response_reg  Response regulator receiver domain
    5.4e-22   78.4   0.0    1.4e-21   77.1   0.0    1.8  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
      4e-15   55.6   0.4      4e-15   55.6   0.4    2.3  3  HisKA         His Kinase A (phospho-acceptor) domain
    4.2e-07   30.2   0.0    1.3e-06   28.7   0.0    1.9  1  HAMP          HAMP domain
  ------ inclusion threshold ------
      0.026   14.8   2.3      0.037   14.3   0.4    2.4  2  Hpt           Hpt domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   1.1e-25   4.1e-22       1     109 [.     693     804 ..     693     807 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.1e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT....TTSEEEEEESSTSHHHHHHHHHCT CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed....pelpviiltahseeedavealkag 93 
                   +l+vdD  ++r+++  +l + g+ e + a++g+eal l +++++dl+l+Di+mp+mdG+  +++ r++      ++ +++lta+++ e++ ++ +ag
    EHT97967.1 693 ILLVDDAAINRDIFGMMLASLGQ-EFTLAASGEEALVLGRQHRFDLVLMDIRMPEMDGMACAQRWRRDAqnhdAQCMIMALTANTAPEEISRCKEAG 788
                   89*********************.*****************************************887756557799******************** PP

                   ESEEEESSG-HHHHHH CS
  Response_reg  94 addflsKpfdpeeLlk 109
                   ++ +l+Kp++ ++L +
    EHT97967.1 789 MQHYLTKPVSLNQLAN 804
                   ************9976 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.4   1.2e+04      13      32 ..     449     469 ..     445     485 .. 0.61
   2 !   77.1   0.0     4e-25   1.4e-21       2     111 ..     510     615 ..     509     616 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
                 HHHHHHHHHS.TTTEEEEEEE CS
   HATPase_c  13 lvdNavkfat.kageieveik 32 
                 l+ N+++f+  ++g+++++++
  EHT97967.1 449 LINNLLDFSRiESGQLSLHVE 469
                 667777774445555555444 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 4e-25
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 d +rLrqi+ nl++Na+kf t++g i +++k+s+d l + v+D+G+Gi  +d+k +fe+f q   ++  + gtGlGl+i+  l+++mgG +++ s+pg 
  EHT97967.1 510 DGTRLRQILVNLLGNALKF-TDKGAICLSVKRSNDFLIFAVSDSGRGIALADQKAVFEPFFQ---SQGHSPGTGLGLTIASTLARMMGGWLELCSTPGF 604
                 779****************.99****99999877999*************************...334459**************************** PP

                 EEEEEEEEESS CS
   HATPase_c 101 Gttftftlple 111
                 Gt+  + lpl 
  EHT97967.1 605 GTCLSLLLPLG 615
                 ******99986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.1   1.1e+04      52      63 ..      41      52 ..      36      54 .. 0.60
   2 ?   -4.0   0.0       4.5   1.6e+04      40      55 ..     362     377 ..     355     380 .. 0.76
   3 !   55.6   0.4   1.1e-18     4e-15       3      67 .]     399     462 ..     397     462 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.1
                HHHHHHHHHHCC CS
       HisKA 52 dhlvedlLdlsr 63
                ++++e+l  +sr
  EHT97967.1 41 RRIIENLSHMSR 52
                456666665555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHH CS
       HisKA  40 yletiesearrldhlv 55 
                 +l+t +++ + l+++v
  EHT97967.1 362 LLDTFHEQYDNLENIV 377
                 6778888888888887 PP

  == domain 3  score: 55.6 bits;  conditional E-value: 1.1e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +  l +++HELrtPLs++lg++e+L+ + + ++++ ++ +t+ +++  l++l+++lLd+srie+g
  EHT97967.1 399 SSHLTTISHELRTPLSGVLGALELLQLT-PMSDKQSQLSNTASQCTLSLLSLINNLLDFSRIESG 462
                 566899*******************886.788*******************************97 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.5e-10   1.3e-06       1      50 [.     316     365 ..     316     368 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.5e-10
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldr 50 
                 ll r + rPL   ++ +++ + G l++rlp+++ DE+G +ara+N +ld 
  EHT97967.1 316 LLHRHLARPLWDFVSIIEKTGPGTLSARLPENRHDELGSIARAYNLLLDT 365
                 5889*****************************************99986 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.1   1.5e+04       6      24 ..     362     380 ..     359     398 .. 0.62
   2 ?   14.3   0.4     1e-05     0.037      21      80 ..     851     913 ..     820     918 .] 0.80

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHHHHSCC CS
         Hpt   6 fleeaeelleqleqaldqe 24 
                 +l++  e+ ++le+ ++++
  EHT97967.1 362 LLDTFHEQYDNLENIVAER 380
                 5666677777777777333 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1e-05
                 H.....SCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHH CS
         Hpt  21 l.....dqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepellealkalle 80 
                 l     + + l +   ++HtLKG++g  G+++l   +  +E+ ++  ++l l+ e + +l++ l+
  EHT97967.1 851 LcelehNLGSLPKTSTLLHTLKGCLGQAGVSPLVCSVIDMENRVR--HGLTLTIEDISELRHTLN 913
                 14444455688889999*************************666..889999988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 6831.33
//
Query:       EHT97968.1  [L=211]
Description: secretion system regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-24   85.0   0.0    6.9e-24   84.2   0.0    1.4  1  Response_reg  Response regulator receiver domain
    1.1e-19   69.7   0.2    1.8e-19   69.0   0.2    1.3  1  GerE          Bacterial regulatory proteins, luxR family
     0.0001   21.9   0.1    0.00026   20.6   0.1    1.7  1  Sigma70_r4_2  Sigma-70, region 4
  ------ inclusion threshold ------
      0.012   15.1   0.3      0.031   13.8   0.3    1.7  1  Sigma70_r4    Sigma-70, region 4
      0.018   14.8   0.1      0.041   13.7   0.1    1.7  1  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   1.9e-27   6.9e-24       1     111 [.       6     117 ..       6     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.9e-27
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   +l+vdD++l+++++ +ll     +++va  +dg e+++ ++ +++d+++lD+ +pg++Gle++ ++r++ p++ ++++tah ee++a++ l+aga +
    EHT97968.1   6 ILLVDDHELIVNGIINLLSpYPRFHVVAHIDDGLEVYNACRINEPDIVVLDLGLPGINGLEIIPQLRRRLPQMAILAYTAHMEETMAIRTLSAGALG 102
                   89*****************99**************************************************************************** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   ++ K  + + Ll+al
    EHT97968.1 103 YVLKNSSCQVLLAAL 117
                   ******999999887 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.2   4.9e-23   1.8e-19       2      55 ..     149     202 ..     148     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 4.9e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 +L++REr++L+l+a+G++n  I+e+l iS kTV++h+ n+m+KLnv+  +el  
  EHT97968.1 149 ILTPRERQILKLIANGFTNRLIGERLYISVKTVETHRLNVMRKLNVHKVTELLI 202
                 7***********************************************999976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   7.2e-08   0.00026      11      54 .]     150     192 ..     147     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.2e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L++r+r+i+ l+  +g++ + I e+l is++tV+++    ++kL
    EHT97968.1 150 LTPRERQILKLI-ANGFTNRLIGERLYISVKTVETHRLNVMRKL 192
                   99*********8.6**********************88777776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   8.6e-06     0.031       5      48 ..     150     192 ..     148     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.6e-06
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++rer++l+l    g T   Igerl iS  +V  +  + +rkL
  EHT97968.1 150 LTPRERQILKLIA-NGFTNRLIGERLYISVKTVETHRLNVMRKL 192
                 9**********97.56699*************988877777776 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.041       4      37 ..     149     181 ..     146     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgrspsTI 37 
                  L++ eR +I +l+a G ++r I+ rL  s  T+
  EHT97968.1 149 ILTPRER-QILKLIANGFTNRLIGERLYISVKTV 181
                 79*****.*******************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1417.05
//
Query:       EHT97969.1  [L=850]
Description: hypothetical protein CKS_4566 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.015   14.4   0.2      0.033   13.3   0.2    1.6  1  DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
       0.25   11.6  11.1        6.1    7.2   1.9    4.0  3  Osmo_CC          Osmosensory transporter coiled coil
       0.37   11.0   2.0        3.8    7.7   0.0    3.4  3  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
        2.2    9.0   6.0        2.3    8.9   0.1    3.7  3  FliD_N           Flagellar hook-associated protein 2 N-termin


Domain annotation for each model (and alignments):
>> DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   7.4e-06     0.033     157     269 ..     338     453 ..     328     485 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-06
                      B-SSSS--SEEEEEEEEE--HHHHHHHHHHHHHCT----SSHHHHHHHHHT-SSHHHHHTS--EEEEEEEEEEESS---.SBHHHHHHHHHHCT CS
  DNA_ligase_aden 157 klkvdnlpeelevRGEvylrkedFeklNeerleegeklfaNpRNaAaGslRqldpkitakrkLkliayglglvekeelevktqsealkvlkklg 250
                      +l+++    + ++R    +++e+F++l    +++++ + +   NaA  ++Rq+ p   a+ +Lk++a++ +     +   k++ ++ k l++  
       EHT97969.1 338 RLAYQVADLQAQIRSSETFPQEQFSNLQVAMRQAEAGPLTTLLNAALNAIRQISPPNIAREELKALAHQASGKLI-QPLEKAEATMAKLLSNPS 430
                      4555556778899*9999**************************************************9985333.233356666667777666 PP

                      --....B-TT-EEECSHHHHHHH CS
  DNA_ligase_aden 251 lk....vseelklvksieevley 269
                      ++    ++++ ++v +++ +  +
       EHT97969.1 431 FRsdmdINTTKRMVTEANRLPPF 453
                      65111144444444455555444 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.009        40      20      35 ..     216     231 ..     214     237 .. 0.79
   2 ?    7.2   1.9    0.0014       6.1      12      46 .]     245     279 ..     243     279 .. 0.86
   3 ?    3.5   0.1      0.02        88      12      32 ..     649     669 ..     644     689 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.009
                 HHHHHHHHHHHHHHHH CS
     Osmo_CC  20 kvedideeIaaLeekR 35 
                 ++ ++de+Ia+Le  +
  EHT97969.1 216 EISNLDEQIAQLEHYQ 231
                 6999********9743 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0014
                 XXXTHHHHHHHHHHHHHHHHHHHHHHHHHH---XX CS
     Osmo_CC  12 ehYdnIEqkvedideeIaaLeekRqrLvdqHPkle 46 
                 + +   E  +e id  +aaL   Rq+  + H +l+
  EHT97969.1 245 DPHARAELHIEFIDDKLAALDTHRQQQLESHQRLN 279
                 557777999*****************999997775 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.02
                 XXXTHHHHHHHHHHHHHHHHH CS
     Osmo_CC  12 ehYdnIEqkvedideeIaaLe 32 
                 e+ dnI +   did+ I+a  
  EHT97969.1 649 EELDNIKNDFADIDQKINAVA 669
                 6779*************9865 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.8      0.31   1.4e+03      22      73 ..     206     260 ..     188     296 .. 0.57
   2 ?   -2.2   0.0         1   4.5e+03      43      75 ..     396     431 ..     378     442 .. 0.61
   3 ?    7.7   0.0   0.00085       3.8      34     112 ..     556     631 ..     538     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
                      ---G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH....T-HHHHHHHHHHHHHHT-H CS
  PEP-utilisers_N  22 eeveaedveaelerleeAlekvreelealaeka....lgeeeaaifeahlmlleDp 73 
                       +v  +++ +e++ l+e ++++++  + +a+ +    + ++  a  e h+++++D+
       EHT97969.1 206 ARVLVKKPIKEISNLDEQIAQLEHYQKLIADLTqlrsV-QDPHARAELHIEFIDDK 260
                      33444445555555555555554444444333343321.12244566677776665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
                      HHHHHHHHHHHH.......T-HHHHHHHHHHHHHHT-HHH CS
  PEP-utilisers_N  43 vreelealaeka.......lgeeeaaifeahlmlleDpel 75 
                      +reel+ala++a       l    ++  ++ + ll+ p++
       EHT97969.1 396 AREELKALAHQAsgkliqpL----EKAEATMAKLLSNPSF 431
                      56666666666654443221....1222344455555555 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00085
                      HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHTT-HH CS
  PEP-utilisers_N  34 erleeAlekvreelealaekalgeeeaaifeahlmlleDpelleeveerIregglnaeaAveevveefaaqfealddey 112
                      e l + l+k+++e+++l   + g+ + ++    + l+   + +e+ve+ +r++  +  +A++e v+++ +++++++d y
       EHT97969.1 556 ENLVQSLKKLKDEVQQLT--ISGQGKNELKGLIAGLITQHQTMESVEAILRHHTESNTYAFKEIVSDLYKKMSSIGD-Y 631
                      566677777777777764..2444457899999999999************************************99.7 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.24   1.1e+03      28      49 ..     221     242 ..     198     277 .. 0.68
   2 ?   -2.2   0.2       1.6   7.2e+03      19      54 ..     561     596 ..     555     615 .. 0.60
   3 ?    8.9   0.1   0.00052       2.3       6      61 ..     619     676 ..     617     709 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
                 XXXXXXHHHHHHHHHHHHHHHH CS
      FliD_N  28 tklewkqsayrelnsklsnlks 49 
                  +  ++ + y++l  +l++l+s
  EHT97969.1 221 DEQIAQLEHYQKLIADLTQLRS 242
                 3334566777777777777776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                 XXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHH CS
      FliD_N  19 kldkleqkktklewkqsayrelnsklsnlksalsal 54 
                  l+kl+ + ++l+   +  +el+  ++ l+++ +++
  EHT97969.1 561 SLKKLKDEVQQLTISGQGKNELKGLIAGLITQHQTM 596
                 456667777777777666777777777766644333 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00052
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXX.GGGGG CS
      FliD_N   6 dslvkqlmkaera.kldkleqkktklewkqsayrelnsklsnlksalsalsk.sstfs 61 
                 ++l k++ ++  + ++  l q+ + l++k +++ +++++++++ ++++a++k  +t+s
  EHT97969.1 619 SDLYKKMSSIGDYpRKHALMQRINALQTKCEELDNIKNDFADIDQKINAVAKfHATWS 676
                 57889999999995555699*************************9986655555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1290  (0.0719505); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 5982.40
//
Query:       EHT97970.1  [L=42]
Description: hypothetical protein CKS_4563 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 351.70
//
Query:       EHT97971.1  [L=111]
Description: putative DSBA oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-09   36.1   2.0      4e-09   36.1   2.0    1.8  2  ScsC_N         Copper resistance protein ScsC N-terminal doma
      2e-05   24.8   0.4    6.2e-05   23.2   0.1    1.8  2  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> ScsC_N  Copper resistance protein ScsC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   2.0   4.5e-13     4e-09       5      31 ..      27      53 ..      25      56 .. 0.91
   2 ?   -2.1   0.1       0.4   3.6e+03       1       7 [.      57      63 ..      57      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.5e-13
      ScsC_N  5 iekivrdYLleNPEiLvEAlqaLqkkq 31
                i ++ ++YL+ +PEiL+E++++Lq+ q
  EHT97971.1 27 IVEVAKNYLISHPEILIEVSEKLQQEQ 53
                7899*********************99 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.4
      ScsC_N  1 Qkaaiek 7 
                Q++ai++
  EHT97971.1 57 QTKAIGQ 63
                8999997 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.085   7.6e+02     103     111 ..      50      58 ..       9      79 .. 0.58
   2 !   23.2   0.1   6.9e-09   6.2e-05       4      32 ..      77     105 ..      74     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.085
                    H.....HHH CS
  Thioredoxin_4 103 aaealdkde 111
                    ++e+l++++
     EHT97971.1  50 QQEQLKQQT 58 
                    222222222 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 6.9e-09
                    SSEEES-TT-SEEEEEEE-TT-HHHHHHH CS
  Thioredoxin_4   4 tdiviGnpdApvtvieyedlrCphCakfe 32 
                    +++++G  dA+v ++e+ d++C +Ca++ 
     EHT97971.1  77 DTPSYGPLDAKVALVEFFDYQCVVCAALL 105
                    5789**********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 814.57
//
Query:       EHT97972.1  [L=125]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-15   56.5   1.0    2.8e-15   56.4   1.0    1.1  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   1.0   1.5e-19   2.8e-15      53     142 ..      10      98 ..       1     102 [. 0.88

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.5e-19
       DDE_3  53 vtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                  + + +  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97972.1  10 LFNKASKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWLKA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 98 
                 55566666789**************************************9.9*****************************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 920.21
//
Query:       EHT97973.1  [L=328]
Description: ParB family chromosome/plasmid partitioning protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-35  120.5   0.5    1.1e-34  119.7   0.5    1.4  1  ParB           ParB family
    7.1e-08   32.6   0.0    1.6e-07   31.5   0.0    1.5  1  ParBc          ParB-like nuclease domain
    0.00014   21.9   0.1     0.0004   20.5   0.1    1.8  1  SoPB_HTH       Centromere-binding protein HTH domain
  ------ inclusion threshold ------
      0.044   13.9   0.0       0.12   12.5   0.0    1.7  1  Trp_repressor  Trp repressor protein


Domain annotation for each model (and alignments):
>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.5   2.4e-38   1.1e-34       1     125 [.     193     318 ..     193     319 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 2.4e-38
        ParB   1 FPvaseLtlaDYklLlkvaeklekkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaefedkkqfarkkt.. 97 
                 FP++seL+++DY++Ll++++k++++++ ++ l++ v++++e+ ++ ++ +e+ +k++i+  +++es+   k+   +k v+ekLa f+dkkqfarkkt  
  EHT97973.1 193 FPSVSELSISDYRALLEMTDKARARQIRIDVLVDCVRSRMEE-DASHDITEPAYKNRIISYFRAESEGPRKAAGSKKIVTEKLAVFTDKKQFARKKTna 290
                 9*****************************************.9***********************999999998999******************99 PP

        ParB  98 kkRlvsYefsrlskevqdelDkaIrevl 125
                  kRlv+Yefsrls+ +q+elD+a+r v+
  EHT97973.1 291 DKRLVTYEFSRLSAACQAELDAAVRGVI 318
                 9************************998 PP

>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.5e-11   1.6e-07      10      77 ..      61     126 ..      52     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.5e-11
       ParBc  10 pnplqprkdspekieelvasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlg.lkevpvivleid 77 
                 + ++q+ ++ +e++ +++++I+   +  P+i r+++ gr ei++G rR+ A+ + g ++ev v+   ++
  EHT97973.1  61 NGRDQAFLT-RESVSDISRTIR-LQQFFPAIGREVN-GRTEILDGSRRRAACLYNGtAFEVLVTRDALS 126
                 578899999.************.8888********9.*******************6666666655555 PP

>> SoPB_HTH  Centromere-binding protein HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   8.9e-08    0.0004      21      69 ..     161     209 ..     144     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 8.9e-08
    SoPB_HTH  21 nlsalaeaeklskkilskmlrvaklPdavvalFasPaelslksGdaLak 69 
                 n s +a ae ls   +++  + a +Pd ++a+F s +els+    aL +
  EHT97973.1 161 NQSEIAAAEGLSAAKVTRAFQAAAVPDEIIAVFPSVSELSISDYRALLE 209
                 45889***********************************998888864 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05      0.12      21      69 ..     132     179 ..     118     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
  Trp_repressor  21 ellelllTpdE..realaqRlqvvkeLLkeelsqreIaeelgvSiAtItRv 69 
                    +l  ++ T++E  +  l++Rl+ +     e++ q+eIa+  g S+A++tR 
     EHT97973.1 132 QLAVDIQTAKEhtLRELGKRLRLMY---PEDMNQSEIAAAEGLSAAKVTRA 179
                    5566777888744568999999877...9*********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2428.24
//
Query:       EHT97974.1  [L=362]
Description: ParA family chromosome partitioning protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-39  131.7   0.2    1.3e-38  130.9   0.2    1.4  1  HTH_54     ParA helix turn helix domain
    1.6e-25   90.1   0.0    2.3e-25   89.5   0.0    1.2  1  AAA_31     AAA domain
    1.8e-07   31.2   0.0    2.8e-07   30.6   0.0    1.5  1  CbiA       CobQ/CobB/MinD/ParA nucleotide binding domain
      0.001   18.5   1.7      0.078   12.2   0.1    2.5  3  MipZ       ATPase MipZ
     0.0025   17.3   0.0     0.0037   16.7   0.0    1.2  1  Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/
  ------ inclusion threshold ------
      0.035   13.5   0.3      0.097   12.1   0.3    1.9  1  ParA       NUBPL iron-transfer P-loop NTPase
      0.039   13.2   0.0       0.29   10.4   0.0    2.2  3  VirC1      VirC1 protein


Domain annotation for each model (and alignments):
>> HTH_54  ParA helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.2     5e-42   1.3e-38       2      92 .]      16     106 ..      15     106 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 5e-42
      HTH_54   2 ekmLqelteqiqkqkkElkedeyyqtyskaalaklpklsrrkvdkavsemeaeGyefekkeagstekYaltiqnvidlykhrgvPkyrdrh 92 
                 ++mL++++++i+  ++E+  d+yyqt++++++a+lpklsrr+v++a++eme++G++f kk+ag+t++Yaltiq+v+d+y+hr+vPkyrd h
  EHT97974.1  16 SAMLRSMSDDISVRRNEFGLDQYYQTFTRNSVANLPKLSRRAVEQAIEEMESQGHVFGKKDAGNTRHYALTIQDVVDIYAHRKVPKYRDVH 106
                 68**************************************************************************************976 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0   9.2e-29   2.3e-25       3     169 ..     113     303 ..     112     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 9.2e-29
      AAA_31   3 vIaianqKGGvGKTTtsvnlaaala......klgkkvLlvDlDpQanattglgiekne...iektlyevl...ieeknikeaiiktk.venldlipssi 88 
                 vI ++n KGGv KT ++v la  l       + + ++L+vDlDpQa++t+ l+  +n+   i +t  +++   ++  +++e iik + ++ +d+ip+si
  EHT97974.1 113 VIFVVNLKGGVSKTVSTVTLAHGLRvhqdllQHDLRILVVDLDPQASSTMFLSQ-ENSigsIMETAAQAMlndLDADQLREDIIKPTiITGVDVIPASI 210
                 799******************98754211225689***************8874.4443442233333334444667777777766648888******* PP

      AAA_31  89 d...Laeaeielvelekk.......eeil.kellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleG....leqllktieevkk 169
                 d   +a+  ++lv+   +        e+l ++++++v ++YD+i+iD+ P+L+ ++ naL+asd +  p+ + +   +     l++l ++ie++++
  EHT97974.1 211 DdgfIASQWNDLVR---EhlpdrlpSEVLrQTIIDRVGSDYDFIFIDTGPHLDAFMLNALAASDLLCTPTPPAQVDFHStlkyLTRLPEMIEQLEE 303
                 95643444444544...33446777666758899**********************************9988775544400004445555555444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.1e-10   2.8e-07       1      55 [.     114     204 ..     114     345 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.1e-10
                 EEEEESSTTSSHHHHHHHHH......HHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH...............................C CS
                 xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................x RF
        CbiA   1 iaiastkGGvGKTtlaanLa......ralarrglrVllvDaDpqannlaileglendiep...............................d 55 
                 i++++ kGGv KT+ +++La      + l ++ lr+l+vD+Dpqa++++ +   en i                                 d
  EHT97974.1 114 IFVVNLKGGVSKTVSTVTLAhglrvhQDLLQHDLRILVVDLDPQASSTM-FLSQENSIGSimetaaqamlndldadqlrediikptiitgvD 204
                 789****************94444444667889**************99.444444443345555566666665555555555555555550 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   3.3e+03     154     204 ..       4      56 ..       2      65 .. 0.50
   2 !    5.2   0.0    0.0044        11       2      49 ..     113     165 ..     112     193 .. 0.73
   3 !   12.2   0.1   3.1e-05     0.078      91     136 ..     239     284 ..     225     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHTTTTT-SS--EEEEEEESB-S--HHH..HHHHHHHHHHHHHH CS
        MipZ 154 lyaelvwearkkrakaerkevdWvvlrnrlsalearn..kkkveealeeLskr 204
                 +y  +   ar++ a+    + d  v rn  +  +      ++  ++l +Ls+r
  EHT97974.1   4 HYGGVDETARRASAMLRSMSDDISVRRNEFGLDQYYQtfTRNSVANLPKLSRR 56 
                 55555555666666655555555566666554443221123333345555554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0044
                 EEEE--SSTTSSHHHHHHH......HHHHHHTTT--EEEEE--TTT-HHHHHHH CS
        MipZ   2 vivlgnekGGsGksttavh......vavaLlkkGarvaaidldlrqrtlaryle 49 
                 vi + n kGG  k+  +v       v   Ll++ +r+ ++dld  q++++ +l 
  EHT97974.1 113 VIFVVNLKGGVSKTVSTVTlahglrVHQDLLQHDLRILVVDLDP-QASSTMFLS 165
                 78899******99655544001222556789999*********6.666666664 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHH CS
        MipZ  91 elvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvdf 136
                 ++++++ +++dfi idt  + +a +  a + +d l tP   + vdf
  EHT97974.1 239 TIIDRVGSDYDFIFIDTGPHLDAFMLNALAASDLLCTPTPPAQVDF 284
                 6789999**********999999****************9999999 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06    0.0037       6      71 ..     118     188 ..     113     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
   Fer4_NifH   6 yGkGGiGksttsqnlsaala......emgkkvlivGCDPkaDstrlllggkaqetvldtlrekgavedvkve 71 
                   kGG+ k++++  l++ l       ++  ++l+v  DP+a st +l +   + ++++t++++ + +d+  +
  EHT97974.1 118 NLKGGVSKTVSTVTLAHGLRvhqdllQHDLRILVVDLDPQASSTMFLSQENSIGSIMETAAQAML-NDLDAD 188
                 569*****9999999887651111115667****************99************99876.444433 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   3.8e-05     0.097       5      44 ..     113     158 ..     111     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.8e-05
        ParA   5 viavlSgKGGVGKStvavnlAlaLa......kkglkvgllDaDiyG 44 
                 vi v+  KGGV K+  +v+lA  L+      +++l++ ++D+D   
  EHT97974.1 113 VIFVVNLKGGVSKTVSTVTLAHGLRvhqdllQHDLRILVVDLDPQA 158
                 7999******************998777777788888888888544 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.9   4.8e+03      71      84 ..      57      70 ..      46      76 .. 0.61
   2 ?   -0.5   0.0      0.23     6e+02       4      24 ..     114     134 ..     112     142 .. 0.80
   3 ?   10.4   0.0   0.00011      0.29      57     140 ..     219     305 ..     213     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.9
       VirC1 71 lleaayeeaegeGf 84
                ++e+a ee+e++G+
  EHT97974.1 57 AVEQAIEEMESQGH 70
                34555555555554 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.23
       VirC1   4 itfcslkGGaGkttalmglcs 24 
                 i ++ lkGG  kt + ++l  
  EHT97974.1 114 IFVVNLKGGVSKTVSTVTLAH 134
                 557889*******99988765 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00011
       VirC1  57 wddacevfvadelp..lleaayeeaegeGfdyaladtrgGsselnntiiassdllliPtmltpldidealatyryviell.laeela 140
                 w+d    +  d lp  +l ++  +  g+ +d+ ++dt      +    +a+sdll  Pt  +++d  ++l+    + e++ + ee  
  EHT97974.1 219 WNDLVREHLPDRLPseVLRQTIIDRVGSDYDFIFIDTGPHLDAFMLNALAASDLLCTPTPPAQVDFHSTLKYLTRLPEMIeQLEEEG 305
                 66666666666665335677777778899********999999999999*********************99999988886555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2639.93
//
Query:       EHT97975.1  [L=288]
Description: RepA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2201.82
//
Query:       EHT97976.1  [L=70]
Description: DNA polymerase III theta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-29  100.5   0.1    3.3e-29  100.3   0.1    1.0  1  DNA_pol3_theta  DNA polymerase III, theta subunit
  ------ inclusion threshold ------
      0.049   13.4   0.1       0.05   13.4   0.1    1.0  1  MdcG            Phosphoribosyl-dephospho-CoA transferase MdcG


Domain annotation for each model (and alignments):
>> DNA_pol3_theta  DNA polymerase III, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.1   3.7e-33   3.3e-29       1      57 [.       2      58 ..       2      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 3.7e-33
  DNA_pol3_theta  1 klNLaelskeemdkinvdlaasgvafkERynmPVvaeqvereqPeaLreYFreRlay 57
                    ++NLa+ +k+e+dkinvdlaasgva++ER+n PV++ qve++qPe+Lr+YFreRl++
      EHT97976.1  2 SHNLAAREKAERDKINVDLAASGVAYRERLNLPVIPAQVEHQQPEELRDYFRERLTM 58
                    69*****************************************************86 PP

>> MdcG  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   5.6e-06      0.05      36      86 ..       7      54 ..       4      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.6e-06
        MdcG 36 rRakaedagaevplGlrlppaarkqRlalavapsaiarvveplaLaaalaa 86
                +R+ka ++++ +++ l++   a ++Rl l v p++++ +++p++L++ +++
  EHT97976.1  7 AREKA-ERDK-INVDLAASGVAYRERLNLPVIPAQVE-HQQPEELRDYFRE 54
                67777.5665.888888888****************5.9*******87763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 530.53
//
Query:       EHT97977.1  [L=38]
Description: hypothetical protein CKS_4552 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 294.27
//
Query:       EHT97978.1  [L=54]
Description: hypothetical protein CKS_4551 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-06   26.3   0.1    6.1e-06   26.1   0.1    1.0  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   3.4e-10   6.1e-06     129     170 ..       4      44 ..       2      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.4e-10
                      -TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase 129 tpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      +p +lRhs+a + + ag+ +++ q++lG++s ++t+ Yt+v+
       EHT97978.1   4 NPRSLRHSYAAH-AVAGIHPKAQQSMLGYKSFKSTEAYTKVF 44 
                      7899*******9.669************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       181  (0.0100954); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 439.84
//
Query:       EHT97979.1  [L=179]
Description: FliC family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-20   71.1   6.4    9.9e-20   71.1   6.4    2.1  2  Flagellin_N  Bacterial flagellin N-terminal helical region


Domain annotation for each model (and alignments):
>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   6.4   5.5e-24   9.9e-20      60     135 ..       2      77 ..       1      81 [. 0.97
   2 ?   -0.2   0.6     0.054   9.7e+02      93     109 ..     111     127 ..      98     152 .. 0.58

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 5.5e-24
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHHHHHHHH-EETTEE-SS CS
  Flagellin_N  60 lvrnnslgisrlqtaqgalselsdilqrlkelavaasndsnsdedrqslqaelqqLtdelnrianttsfNGekLla 135
                  ++rn+++gis++qta+gal+e++++lqr+++l+v+a+n+sns +d +s+qae++  ++e++r+ ++t+fNG k+l+
   EHT97979.1   2 ASRNANDGISLAQTAEGALTEVNNNLQRVRDLTVQAQNSSNSASDIDSIQAEVNLRMQEIDRVTKQTDFNGIKVLN 77 
                  79***********************************************************************997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.054
                  HHHT-TTTS-SHHHHHH CS
  Flagellin_N  93 vaasndsnsdedrqslq 109
                   aa+++++++++++s q
   EHT97979.1 111 GAAQSGTTQNTASSSGQ 127
                  44444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1278.11
//
Query:       EHT97980.1  [L=70]
Description: hypothetical protein CKS_4548 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.055   13.2   0.0      0.063   13.0   0.0    1.0  1  FimH_man-bind  FimH, mannose binding


Domain annotation for each model (and alignments):
>> FimH_man-bind  FimH, mannose binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.5e-06     0.063      63     114 ..      13      63 ..       9      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-06
                    HHHHHEEEEEEETTEEEEES-SS----EEE-SSS-EE--EEEEEEESTTSSE CS
  FimH_man-bind  63 GvLanfkGsvkyagssYplPltsetkvleikdktllplplklYltpisaagG 114
                    G  +n k  v+ +g+ +p P+ se + +++++ + ++lp++lY+  +s  gG
     EHT97980.1  13 GIFKNLKYGVNISGTEHPAPV-SEMEIIDMNNSESKKLPVVLYFELTSLGGG 63 
                    78889999999*********8.6889*****************998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 509.56
//
Query:       EHT97981.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.7e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.6e-06   26.5   0.3    3.6e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.087   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT97981.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT97981.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT97981.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT97981.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT97981.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT97981.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.6e-09   3.6e-06       3      52 ..      75     124 ..      73     129 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT97981.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.6e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT97981.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************98 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT97981.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT97981.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT97981.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT97981.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT97981.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT97981.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT97981.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT97981.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT97981.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2368.19
//
Query:       EHT97982.1  [L=288]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-14   52.6   0.0    6.6e-14   51.7   0.0    1.4  1  Trans_reg_C  Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.7e-18   6.6e-14       2      77 .]      30     102 ..      29     102 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 3.7e-18
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++++l +k++++L+lL+e+++ +vs++e l+evw+  + v+++++ + i+ LR  L+d  ++++ I t+++ GY+l
   EHT97982.1  30 TTLQLRKKQTDVLALLCEKYPSPVSQDEFLSEVWDGCY-VTSQSIAQMIRSLRISLKD--ESKKIIVTIPKLGYQL 102
                  5689*******************************999.*******************..4677**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2244.55
//
Query:       EHT97983.1  [L=165]
Description: lytic transglycosylase, catalytic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-19   68.0   0.0    6.8e-19   67.6   0.0    1.1  1  SLT              Transglycosylase SLT domain
  ------ inclusion threshold ------
      0.027   14.9   0.0      0.041   14.4   0.0    1.3  1  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc
      0.055   13.7   0.0      0.077   13.2   0.0    1.3  1  Lys              C-type lysozyme/alpha-lactalbumin family
      0.077   11.5   0.1      0.095   11.2   0.1    1.0  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   1.5e-22   6.8e-19       2     100 ..      26     127 ..      25     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.5e-22
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-....TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvs....ksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNa 96 
                 +i +a++ ++v+p l+ ai+++ES+ +p+A +    k+ +vG+mQi+  ++++l+ r+ ++++ ++d + n+  g+++Lk+ +++y+  ++  + +Y++
  EHT97983.1  26 CITQAAQCFQVNPLLIRAIIWHESRNQPQALNinknKTVDVGIMQINTVHFSSLKSRGVDEKRLRRDSCANVFSGTWILKQKIERYG-YTWDGIGSYHS 123
                 8999****************************9887888************************************************.*********97 PP

                 -HHH CS
         SLT  97 Gegt 100
                  +++
  EHT97983.1 124 RTAA 127
                 6655 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.1e-06     0.041       4      84 ..      27     142 ..      24     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.1e-06
                      HHHHHHHCT.-HHHHHHHHHHHHTTTTCHHHHH..................................CT-TSE.B...........HCTE-SSH CS
  Glucosaminidase   4 aleaakkygippsvalaqaalEsgwgtsrlake..................................qnNlfGik...........kfrkydsv 52 
                      + +aa++ +++p ++ a   +Es +  ++l  +                                  +      +           k+++y   
       EHT97983.1  27 ITQAAQCFQVNPLLIRAIIWHESRNQPQALNINknktvdvgimqintvhfsslksrgvdekrlrrdsC------AnvfsgtwilkqKIERYGYT 114
                      67999*********************998888833444444444444444444444444444444443......04444333443445699999 PP

                      HHHHHHHSHHHHHCCHECECTHCCHHHHHHHH CS
  Glucosaminidase  53 eesirahkllssskkyatdpaYaekliaiikk 84 
                      +++i ++    +s+  a+ ++Y+++++++i++
       EHT97983.1 115 WDGIGSY----HSRTAAQREKYVRDIVSLIAH 142
                      9999999....1222578899*******9976 PP

>> Lys  C-type lysozyme/alpha-lactalbumin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.077      31      65 ..      44      78 ..      34     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                HHHHHHTTBTT-EEEETTSEEEETTTTEETTTTSB CS
         Lys 31 laehesgydtkavvknangstdyGlfqindklwCk 65
                ++ hes  + +a++ n+n+  d G++qin   + +
  EHT97983.1 44 IIWHESRNQPQALNINKNKTVDVGIMQINTVHFSS 78
                6789*************************988765 PP

>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.1e-05     0.095     411     496 ..      57     142 ..      46     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.1e-05
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 411 lvykksvtvgeflevnpvfeeeLkklglwseellkkilesvqgleeipeeikrvfktaldidqedhikaqaaiqkwidqsiSktin 496
                      ++ k ++++  ++++n+v   +Lk++g+++++l+++  ++v + + i ++  + +  ++d     h +++a++ k++ + +S+  +
       EHT97983.1  57 NINKNKTVDVGIMQINTVHFSSLKSRGVDEKRLRRDSCANVFSGTWILKQKIERYGYTWDGIGSYHSRTAAQREKYVRDIVSLIAH 142
                      44444444444699999999*****************9999999999999999************************999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1211.78
//
Query:       EHT97984.1  [L=124]
Description: hypothetical protein CKS_4542 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   11.8   0.0       0.13   11.4   0.0    1.2  1  DUF5129   Domain of unknown function (DUF5129)


Domain annotation for each model (and alignments):
>> DUF5129  Domain of unknown function (DUF5129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.1e-06      0.13      19      55 ..       3      43 ..       1      49 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-06
     DUF5129 19 eldfyeptrvavyt....rdgeasddlnekvLefaraehPe 55
                +++   p+  a y+    ++++    +n+kvL+f +++hPe
  EHT97984.1  3 QINQVSPAALAAYSsasdEENATGSSFNDKVLDFCKQNHPE 43
                67777899999998776555666789**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 915.07
//
Query:       EHT97985.1  [L=201]
Description: hypothetical protein CKS_4541 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   12.9   0.5         14    5.7   0.1    2.7  3  CARD_2    Caspase recruitment domain


Domain annotation for each model (and alignments):
>> CARD_2  Caspase recruitment domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0015        27      26      63 ..       9      48 ..       2      57 .. 0.75
   2 ?    5.7   0.1    0.0008        14      10      38 ..      70      98 ..      61     105 .. 0.80
   3 ?   -3.0   0.0      0.43   7.7e+03      22      29 ..     157     164 ..     141     173 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0015
                GGG-T.TS-HHHHHHHH..HHHHHHHHHHHHHHHHHHHCT CS
      CARD_2 26 lphltecLteedkeeIr..aeeenkGniaaaeeLldrllr 63
                l+ ++e+  e + ++Ir    +e++G  a+ ++++d+l+ 
  EHT97985.1  9 LSRCSEIHAEYELQTIRlrESCEKQGYEAGFRLFFDQLVA 48
                56666666666666665116679**************986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0008
                HHTHHHH.TT--HHHHGGG-T.TS-HHHH CS
      CARD_2 10 rllrprlketikpseilphltecLteedk 38
                ++l++ l +ti ++ i++hl+e +  +++
  EHT97985.1 70 NALKSALHDTIIVNRIIHHLQEKCGHQKV 98
                578999**************876666555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.43
                 HHHHGGG- CS
      CARD_2  22 pseilphl 29 
                 ++++++hl
  EHT97985.1 157 TEAVMTHL 164
                 23455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1555.06
//
Query:       EHT97986.1  [L=165]
Description: oxygen-regulated invasion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-19   68.0   0.8    1.1e-18   67.7   0.8    1.0  1  OrgA_MxiK  Bacterial type III secretion apparatus protein (Or


Domain annotation for each model (and alignments):
>> OrgA_MxiK  Bacterial type III secretion apparatus protein (OrgA_MxiK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.8   6.2e-23   1.1e-18      31     181 ..      15     162 ..       2     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 6.2e-23
   OrgA_MxiK  31 a..vvNellldkyrlkt.deeadpadpltrllldkWqrLpqvayLlGaqklRaellsegrlirlddsvqsFlalpLpeeqeapaktlpedealvaaGla 126
                    ++N + l++ +l++  + + + + +  ++l  W+++p+ a L+G ++ R++ll++ +l+  d ++ +F+ lp+p ++ a     ++  a  ++Gla
  EHT97986.1  15 CpkLRNLWFLRQGKLSHlPPAWQSDNETLLQMLSCWHLIPETAHLIGGYLMRSHLLKRAALLMSDPRLLAFISLPMP-HRIALDPGDQNSMATTSCGLA 112
                 334789*********9977788888889999*********************************************9.5555555667778999***** PP

   OrgA_MxiK 127 qLlallealpealaqRlpLLFppiveeaeaalpeqatdaspesisllklAlqyAk 181
                  +l+  + lp+al+qRl L Fp    ++   +p  a+ ++ + i+ll++Al yAk
  EHT97986.1 113 FILSQFPGLPQALRQRLLLSFP----AGMSIEPLPAG-KTLNHINLLRMALTYAK 162
                 **********************....45555555433.44568***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1309.28
//
Query:       EHT97987.1  [L=255]
Description: YscJ family type III secretion system bridge component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-19   68.4   1.2      1e-18   67.7   1.2    1.2  1  YscJ_FliF  Secretory protein of YscJ/FliF family
  ------ inclusion threshold ------
       0.63    9.9   2.8       0.99    9.2   0.7    2.0  2  VIT1       VIT family


Domain annotation for each model (and alignments):
>> YscJ_FliF  Secretory protein of YscJ/FliF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   1.2   1.2e-22     1e-18       7     185 ..       9     188 ..       6     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.2e-22
   YscJ_FliF   7 aaivvlvlwlsrpeyevLysnlsekdaaeivekLdeegipyklsdd...ggtilVpedqvsearlklaseglpksgssvgf.elfdkkssfgtTdfeeq 101
                 +a+v+++l+ls  + e L+ nl++++a+++++ L++ +++   + +   g t+ V++++ ++a   + +  lp s++ v+  + f  +  + t+ + eq
  EHT97987.1   9 LAVVLFALMLSACNDEKLLFNLTQEQANQVLAVLQQHNVSASKEGTlkaGYTVAVNKSESTAALSIINQYQLPWSAD-VQIaQAFP-EGALVTSPNAEQ 105
                 68899999999999*************************9988764444************************9984.56558999.778********* PP

   YscJ_FliF 102 vkyqralegeLartiesldgVesArVhlalPeksvfvreqkepsAsVvlklkpgrelse.eqvkaIvnlVasaVpglkpenVtvv 185
                 ++     e++L+++++ + +V +ArVh++ P  +   +++ +  + V++++k +  +++   +  I++l++++  +l  en++vv
  EHT97987.1 106 ARVISLQEQRLEQSLRMIAQVVNARVHVSYPAFNNDSSRTPTGHVGVIITYKGE--IDDnLFIPQIKHLIKNSFYDLRYENISVV 188
                 *******************************98888888888999999999975..555278999******************98 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.069   6.2e+02      95     120 ..      30      56 ..       8     100 .. 0.50
   2 ?    9.2   0.7   0.00011      0.99     152     185 ..     193     226 ..     188     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.069
        VIT1  95 lseelaqevaaellknpda.llelmlr 120
                 l++e+a++v+a l++++ +  +e  l+
  EHT97987.1  30 LTQEQANQVLAVLQQHNVSaSKEGTLK 56 
                 445555554444444222211122222 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00011
        VIT1 152 PllpylfvesvglalvvsiavtllalllfGavka 185
                 P++ y+  ++v +al + +++ l+al+l Gav +
  EHT97987.1 193 PMIQYVTPTKVPDALPAILILILVALALCGAVTS 226
                 9******99**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      778  (0.0433934); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1998.03
//
Query:       EHT97988.1  [L=107]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-06   26.2   0.6    1.2e-05   25.4   0.6    1.4  1  T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, Ep
      0.001   19.6   0.3     0.0011   19.5   0.3    1.2  1  T3SS_basalb_I  Type III secretion basal body protein I, YscI,
  ------ inclusion threshold ------
      0.047   14.0   0.1      0.068   13.4   0.1    1.3  1  Med15_fungi    Mediator complex subunit 15


Domain annotation for each model (and alignments):
>> T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.6     2e-09   1.2e-05      10      58 ..      43      94 ..      35      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2e-09
                   CCTHHHHHHHHHHHHHHHH...STTXHHHHHHHHHHHHCHHHHHCHHHHHHH CS
  T3SS_needle_F 10 qkvskaekelqdalealka...dpsdPaaLakvQfklqqYsvfinaqStavK 58
                   +k+s+   + ++ +++l++    +sdP++L+ +Q+ + +Ys+++++ St+ +
     EHT97988.1 43 NKISDTDMQFKNVINTLSQspqFTSDPQKLLMLQSYMGEYSNYVSLVSTLAR 94
                   5788889999999999999553349***********************9866 PP

>> T3SS_basalb_I  Type III secretion basal body protein I, YscI, HrpB, PscI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   1.9e-07    0.0011      27      96 .]      37     107 .]       7     107 .] 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.9e-07
  T3SS_basalb_I  27 llqglsslkegldqameqvqrtlekakd.gndpadllkaqmsLsqatlqeeliaKvVgkatQnldkLlklQ 96 
                    l++ + ++ +++d + ++v +tl+++ + ++dp++ll +q  + +++  + l++ ++ k + ++++L k+Q
     EHT97988.1  37 LVASTFNKISDTDMQFKNVINTLSQSPQfTSDPQKLLMLQSYMGEYSNYVSLVSTLARKGVSTIETLGKSQ 107
                    3444445556778888888888887744256**************************************99 PP

>> Med15_fungi  Mediator complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.1e-05     0.068      68     109 ..      44      86 ..      34      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
  Med15_fungi  68 rLlqmrimlkeqleklpq.dqftikpeyLeklksqiqkyfeyv 109
                  ++  + +++k++++ l+q  qft +p++L +l+s++  y +yv
   EHT97988.1  44 KISDTDMQFKNVINTLSQsPQFTSDPQKLLMLQSYMGEYSNYV 86 
                  6777899***********99*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 886.76
//
Query:       EHT97989.1  [L=86]
Description: type III secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-24   85.9   0.5    1.8e-24   85.7   0.5    1.1  1  T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, Ep
  ------ inclusion threshold ------
      0.017   15.7   0.4      0.024   15.2   0.4    1.2  1  Com_YlbF       Control of competence regulator ComK, YlbF/Ymc
      0.086   13.3   0.0       0.21   12.1   0.0    1.7  1  TPR_17         Tetratricopeptide repeat
       0.11   12.7   0.2       0.15   12.3   0.2    1.3  1  ABC_tran_CTD   ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.5     4e-28   1.8e-24       1      71 []      15      85 ..      15      85 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 4e-28
                   HHHHHHHHHCCTHHHHHHHHHHHHHHHHSTTXHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHTTT CS
  T3SS_needle_F  1 ldsvasalsqkvskaekelqdalealkadpsdPaaLakvQfklqqYsvfinaqStavKaikDilqgIiqki 71
                   ld+v+ a+++++ ++ k+l+da++al+adpsdP+ La++Q+klq+Y++f+naq+++vKa kDi ++Iiq++
     EHT97989.1 15 LDDVSVAFETGAADMMKQLKDAQKALEADPSDPDVLANFQAKLQEYTLFRNAQTSTVKAYKDIGAAIIQNF 85
                   799*******************************************************************7 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.4   5.5e-06     0.024      16      67 ..      28      75 ..      26      85 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.5e-06
                HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTT....----HHHHHHHH CS
    Com_YlbF 16 eeykeykeaeealeedeelqklikefkklqkelqekqmkg....eelkeeekkelq 67
                + +k++k+a++ale+d+   + +++f+++ +e+  +++ +    +        +++
  EHT97989.1 28 DMMKQLKDAQKALEADPSDPDVLANFQAKLQEYTLFRNAQtstvK--------AYK 75
                5689*****************************988855432233........333 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.6e-05      0.21       3      18 ..      37      52 ..      35      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.6e-05
      TPR_17  3 lkaleldPnnadaynn 18
                +kale dP+++d++ n
  EHT97989.1 37 QKALEADPSDPDVLAN 52
                8************988 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.4e-05      0.15      17      47 ..      30      61 ..      23      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
  ABC_tran_CTD 17 IeaLEeeiaeleaeladpelysdp.eklaels 47
                  + +L   +++lea  +dp++ +++ +kl+e +
    EHT97989.1 30 MKQLKDAQKALEADPSDPDVLANFqAKLQEYT 61
                  78999****************99999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 736.65
//
Query:       EHT97990.1  [L=421]
Description: type III secretion system effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-79  268.4   0.1    1.4e-79  268.2   0.1    1.0  1  PrgH      Type III secretion system protein PrgH-EprH (PrgH)
  ------ inclusion threshold ------
      0.025   14.9   0.1       0.13   12.6   0.0    2.3  2  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> PrgH  Type III secretion system protein PrgH-EprH (PrgH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.2   0.1   1.6e-83   1.4e-79       1     379 []      19     412 ..      19     412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 268.2 bits;  conditional E-value: 1.6e-83
                 EEEESSSTTTT-EEEE-SEEEEEEEESHHHHHHHTTS-........SSS--EEEEE-SSS--EEEEEE-TTSS-......EEEEEEETTEEEEEEE-TT CS
        PrgH   1 vlrllnGplkGsefaLpkgetlfvvGeeeallesaeep........elpentlfiphdkggvnfeieldaaakes.....filevlkedgvteeeisln 86 
                 +l++l+Gp++G+e+ Lp++ +++++ ++ a +                 +ntl+ip d+   n+ ++l a a++      f +ev  e+++   +++ n
  EHT97990.1  19 TLKVLFGPMFGCELNLPADDYFILINQSIAVDGASDAVissgehaaAYTHNTLYIPCDRPSPNLILRLSAPAENCegpgsFRVEVQDENKSFPATVNEN 117
                 59******************99999776665443333355565557899**************99999888877678999******************* PP

                 SEEEETTEEEEEEETTS--XXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXHHHHHHHSGGGTTTEEEE CS
        PrgH  87 silqvgdlafavrraneewsdailnfleksaakekaaeaaea.....rrrrfvlaliallilalalsllvlllasa..keevaelaavldddkarvelL 178
                 +i++ + ++fa++r ++ew++ ++nf +++ ++++  ++ e+      ++  +l ++a ++l+l++ ++v+++++    ++v +l+++l++++a +++ 
  EHT97990.1 118 EIFTREHIRFALKRSEDEWQESVRNFSIPP-NVDAEFNGQETvaefnAKKHHALIVGATIMLVLMITAAVIWYKKLesDRQVLNLNEALAGAPAAIDIY 215
                 ***************************999.444444455556779989999999999999999999999999988889******************** PP

                 EXTTSX.EEEEESSHHHHHHHHHHHHHTTCTTTEEEEEHHHHHHHHHHHHHHHSTTSXEEEEETSSTTSXEEEEETTTXXXXHHHHHHHHHHHHHHXTT CS
        PrgH 179 pgrdgk.lYvlAktqrdaewarqallraelakevevvslddererveqwLdeeypnvdyyrlklddpaepeLilsrergelseaekkklaeaLkellPY 276
                  gr+++ +YvlA++++ +ew ++al +   ++++  ++l + ++   ++L ++  + ++++++ ++p++p++il ++   ls+ ++++l +  ++++P+
  EHT97990.1 216 RGRENStIYVLASKYQALEWVKEALFKLGENNNIIPLWLVQHQKATVEVLIKS--GYPVVQIDYTKPQHPVIILWQD---LSPIQREQLTSLALQEIPF 309
                 ***9988*******************************999998888888888..888999*************888...9999*******99****** PP

                 SSXXEEEEEXHHHHHHHHHHHHHHTTXXEEEEEETTEEEEEEESXXXHHHHHHHHHHHHHHHHHHXSSSEEEEEEEXXXSXXXXXXXXXXXXXXXXXXX CS
        PrgH 277 akevkirelsdeavagqAengLkkvavpYsrideknsvtFvikgaLeDeelqrlrrlveefkrkwGsryvqFsieLkddwlkgkSykygedgYVlvnpk 375
                 a ++k+  +s++++ ++A++gL++++++Y++i+++ +   vi++aL D++l++l r++++f+r+wG++ ++F i+L+++wl++kSy+++++gY ++np+
  EHT97990.1 310 ALDIKVFRKSKQQLLQDARQGLDRMHINYRQINSPSGYALVIRDALSDNALSALLRFINNFNRQWGTHIINFPINLNENWLENKSYLESSNGYLFLNPR 408
                 *************************************************************************************************** PP

                 XXXX CS
        PrgH 376 hWyF 379
                 hWyF
  EHT97990.1 409 HWYF 412
                 ***9 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05      0.13       5      44 ..     207     249 ..     204     250 .. 0.80
   2 ?   -2.2   0.0      0.63   5.7e+03      19      39 ..     350     371 ..     340     376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
       Ank_5   5 g.padvnrldgggntpLhvAak.ygaadvvrlLl.argadlnl 44 
                 g pa+++ ++g+ n+ + v a+ y+a+++v++ l + g+++n+
  EHT97990.1 207 GaPAAIDIYRGRENSTIYVLASkYQALEWVKEALfKLGENNNI 249
                 66777888888888666655555****************9996 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.63
       Ank_5  19 pLhvAakygaadvvrlLl.arg 39 
                 ++  A + +a++ +++++ +++
  EHT97990.1 350 VIRDALSDNALSALLRFInNFN 371
                 5567888999999999995444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2954.71
//
Query:       EHT97991.1  [L=287]
Description: type III secretion system regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-14   52.9   0.1    6.6e-14   51.9   0.1    1.5  1  HTH_18    Helix-turn-helix domain
    1.8e-07   31.1   0.6    0.00021   21.3   0.0    2.4  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   7.4e-18   6.6e-14       3      80 ..     204     280 ..     202     281 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 7.4e-18
                 HHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   3 aalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +  gvs++++++l++  +  +pk+ lr  R      +L+e  ++s+a+iA + G+++ s+Fs  ++ lfg+tP+e+ +
  EHT97991.1 204 RIYGVSESYFRKLCHHAFTRSPKKQLRLWRAANSALQLIE-NKHSIATIAGDNGYASSSHFSSEIKSLFGITPREFKK 280
                 6689***********************************7.**********************************986 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00044         4      17      38 ..     205     226 ..     198     227 .. 0.83
   2 !   21.3   0.0   2.3e-08   0.00021      10      40 ..     247     278 ..     241     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00044
                 HTTSSHHHHHHHHHHHSSS-HH CS
    HTH_AraC  17 elgfSrsyFsrlFkketGmtPs 38 
                  +g+S+syF++l++ ++  +P+
  EHT97991.1 205 IYGVSESYFRKLCHHAFTRSPK 226
                 5799*********999877775 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.3e-08
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                 +i+ iA   g+ S+s+Fs   k+ +G+tP+++
  EHT97991.1 247 SIATIAGDNGYaSSSHFSSEIKSLFGITPREF 278
                 8999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2311.96
//
Query:       EHT97992.1  [L=587]
Description: type III secretion system outermembrane pore forming protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-29  102.7   0.0    2.9e-29  101.9   0.0    1.5  1  Secretin    Bacterial type II and III secretion system protei
    8.2e-19   67.8   0.4    6.2e-13   49.0   0.5    2.9  2  Secretin_N  Bacterial type II/III secretion system short doma


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.0   3.2e-33   2.9e-29       1     169 [.     385     546 ..     385     547 .. 0.93

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 3.2e-33
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvte.dgsirlkidvevssiassqavta.egns 97 
                 al+++g+a+v+s+P++lt++n +A ++++++++ ++ +e++ss         +e++++g++++v P+  + +++i++ +++++  +  ++++++ + +s
  EHT97992.1 385 ALAKKGSAQVVSRPEILTQENVPALFDNNSSFYAKLIGERTSS---------LEKITYGTMISVLPRLAQrQQEIEMILNIQDGGLLLNADGSTeNIDS 474
                 7899*******************************77776644.........99****************8888**********998765554458999 PP

    Secretin  98 vptisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPriv 169
                  p +++++++t++rv  g +l++GG+ +d+++  + ++PlL diP++G+LF ++ +s++k+ +l++i+P ++
  EHT97992.1 475 LPMVNNTQISTEARVPVGYSLLVGGYSRDQDEHHRLGIPLLRDIPFVGKLFDYSYTSHKKMVRLFLIQPGLL 546
                 *********************************************************************765 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.8e-06     0.017       3      78 ..     125     182 ..     123     185 .. 0.89
   2 !   49.0   0.5   6.9e-17   6.2e-13       1      82 []     194     331 ..     194     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-06
                 EEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCT CS
  Secretin_N   3 vfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDv 78 
                 v++L  a    l+++L++ +                  l ++++ ++ d r++s +v+g+p +v+++   +k +D 
  EHT97992.1 125 VVRLAFAPYDRLVAYLQSSG------------------LYDPRFPLRSDGRSGSFYVSGPPVYVELVSAAAKYIDA 182
                 77888888888888888888..................******************************99999985 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 6.9e-17
                 EEEEE-SSS-HHH..............HHHHHHHHCCTT......................................................SST.T- CS
  Secretin_N   1 vrvfpLkyasaad..............lasiLrellgggggesas.........................................sgassqsgal.lg 43 
                 +rv++Lk++ ++d              +a++L++ll++++  +++                                          ++++ ++++ ++
  EHT97992.1 194 IRVIKLKNTFVNDrnytqrdvpisvpgVATVLNQLLNNTSCREGGrsapagaiitvdndtrsaleaasatqkgnfpplpsfnaapaARGRAVDRDIpSQ 292
                 59**********************************999999999*****************************************5555555555055 PP

                 TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSSSE CS
  Secretin_N  44 kggrvvadprtNsllvrgspervarirqlikqLDvpraq 82 
                 +++++v +++tNsll++gs+++v  +++l++++D+p++q
  EHT97992.1 293 QTINIVGYSDTNSLLIQGSERQVSFVEDLVNAIDIPKQQ 331
                 566*********************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4563.82
//
Query:       EHT97993.1  [L=372]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-27   97.3   2.0    2.3e-27   96.3   2.0    1.5  1  HrpJ            HrpJ-like domain
  ------ inclusion threshold ------
      0.026   14.9   0.2      0.053   13.9   0.2    1.5  1  DNA_ligase_A_N  DNA ligase N terminus
       0.03   14.1   0.2        4.9    7.0   0.0    2.3  2  Succ_CoA_lig    Succinyl-CoA ligase like flavodoxin domain
       0.14   10.9   0.0        0.2   10.4   0.0    1.3  1  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   2.0   5.1e-31   2.3e-27       3     164 ..      45     205 ..      43     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 5.1e-31
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHCT-TT-HHHHHHHHS-TT..--HHHHHHHHHHH--SHHHHHHHHHHHHHHS-GGGHHHHHH CS
        HrpJ   3 aetseekskaLaqrkrsdakkseaekleelldllekvldleaeeklkeLrkllksgqlsssaqllalleslfgDpsdqllaLrallrkgrplsaelkel 101
                 + + ee+  +L+ + r   +k  ++++ + +d+++++l+++a+ekl++L+ ++++  l + + l +++++lf+D sd++laLr++l + r+ls+ +k++
  EHT97993.1  45 SNAAEEMADTLSAFGR--FSKIGRKNDSTDNDFVSAMLEDQADEKLDTLIRQVAK--LRDVNTLINFARQLFPDDSDLMLALREMLLS-RQLSELQKKK 138
                 6789************..**********************************964..8******************************.********** PP

                 HHHHHHHHHH.HHTHHHHHHHCTHHHHHHHHC...CCTS-HHHHHHHHHHHHTS---HHHHHHHHHC CS
        HrpJ 102 leqaleeLeq.ekgkeiraGiNialaaklfsq...tdqlslqaLRdlYrqavsddqslsalyealle 164
                 + +a+ +Le+  + k+++ GiN+ + a++fsq     +ls++ LR++Y ++++ d+++  +y+++++
  EHT97993.1 139 IKEAIGDLEKfGDSKKMQSGINVGRLARRFSQeseDKPLSAKDLRNSYLNFLELDMPAGFIYKDWVD 205
                 ***********************99999999863236899*************************97 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.2e-05     0.053      23     110 ..      85     178 ..      47     196 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
                     HHHHHHHHHTS-...SHHHHHHHHHHSS-CCCS------HHHHHHHHHHHHT--HHHHHHH...HHHHS-HHHHHHHHHCCHHHH.....----- CS
  DNA_ligase_A_N  23 railanffrkves.agpedlypalrLllPdydgreygigesllakalaealglskkkikda...lakvgDlgevaeevlskrstl.....akksp 108
                      + l +++r+v++  + + l   +r l+Pd  + ++ ++e ll++ l+e+ + +   ik+a   l+k+gD  +  + +   r  +      + +p
      EHT97993.1  85 DEKLDTLIRQVAKlRDVNTLINFARQLFPDDSDLMLALREMLLSRQLSELQKKK---IKEAigdLEKFGDSKKMQSGINVGRLARrfsqeSEDKP 176
                     33444555555544344457777777**********************998866...55554447778888777443333333333333355555 PP

                     -B CS
  DNA_ligase_A_N 109 lt 110
                     l+
      EHT97993.1 177 LS 178
                     55 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0048        22      23      77 ..      53     110 ..      44     115 .. 0.77
   2 ?    7.0   0.0    0.0011       4.9      54      92 ..     281     320 ..     272     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0048
  Succ_CoA_lig  23 srglgfskvvslGneadvdvadlleylae...dpetkvillylEsirdgrkflsaarr 77 
                   +    f ++  +G + d + +d+++++ e   d++ ++++  + ++rd + +++ ar+
    EHT97993.1  53 DTLSAFGRFSKIGRKNDSTDNDFVSAMLEdqaDEKLDTLIRQVAKLRDVNTLINFARQ 110
                   444679999******************9944456777777777777777777777776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0011
  Succ_CoA_lig  54 etkvillylEsirdgrkflsaarraark.kpvvvlksGrs 92 
                   e ++++ly+ ++ d ++f s+++r +++   +++lk   +
    EHT97993.1 281 EAEIVALYITGLVDTDEFKSVLKRFSKEfMSLLLLKQRAT 320
                   56899***********************999999997654 PP

>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.5e-05       0.2     347     444 ..     125     224 ..      26     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.5e-05
                     HHHHHHHHHHHHTE-EEEECCCHHHHHHHTTT....TTGGGSSEEE..TCHHHHHHHHHHHHHHHHHHHHHHS-TTS---SEE-TTT--EESSTT CS
  Glyco_hydro_15 347 tlldelyekagkgrlwglvryalglleklves....kqltvGlppe..resvisaplpveeladliveaveednslgvLteevdvylgeliraqp 435
                      ll++++   +k +    +++a+g lek+ +s    + + vG+ +   +++  ++pl+ + l+++++++ e d+  g++   ++++ g   r++ 
      EHT97993.1 125 MLLSRQLSELQKKK----IKEAIGDLEKFGDSkkmqSGINVGRLARrfSQESEDKPLSAKDLRNSYLNFLELDMPAGFIYKDWVDVYGYENRTRL 215
                     45566666666666....788888888888885444455566666689999*******************************************9 PP

                     -HHHHHHHH CS
  Glyco_hydro_15 436 llfsealll 444
                     l+f  a+l+
      EHT97993.1 216 LTFILAALV 224
                     999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2877.75
//
Query:       EHT97994.1  [L=681]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-208  693.6   7.9   3.1e-208  693.4   7.9    1.0  1  FHIPEP     FHIPEP family
  ------ inclusion threshold ------
      0.095   13.3   0.0      0.095   13.3   0.0    3.5  4  OAD_gamma  Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  693.4   7.9  3.5e-212  3.1e-208       1     657 [.      24     673 ..      24     674 .. 0.91

  Alignments for each domain:
  == domain 1  score: 693.4 bits;  conditional E-value: 3.5e-212
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP   1 ivlmlilPlptlllDlllalnialsvlillvalyikkpldfsvFPtlLLittlfrLaLnvastrliLlegeegaGkvieaFgefvvggnlvvGlvvFli 99 
                 +v+mli+Plpt+l+D+l+ ln+++++li++ ++y++++l+fs+FP++LLi+t+frLa++++++rl+L++++  aG++i++Fgefv+ +nlvvG+v+F+i
  EHT97994.1  24 VVVMLIIPLPTYLVDFLIGLNLTMALLIFIGSFYVTRVLEFSTFPSILLIMTIFRLAISISTSRLVLTDAD--AGEIIASFGEFVIADNLVVGFVIFFI 120
                 79*********************************************************************..************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 100 lvivqfvVitkGaeRvaEVaARFtLDamPGKqmaIDadlnaGlideeeArerreelereadfyGamDGAsKFvkGDaiagliitliniigGliiGvlqh 198
                 ++ivq++VitkG+eR+aEVaARF+LDamPGKqm+IDadl+aG+ide+e ++rr++le+e+++yGa+DGA+KF+kGDaiag+ii+++n+igG+ +Gvlqh
  EHT97994.1 121 VTIVQYIVITKGSERIAEVAARFSLDAMPGKQMSIDADLKAGVIDEKEVKRRRSDLESESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGISVGVLQH 219
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 199 gmslsealetYtlLtiGDGLvsqiPaLlisvaagiivtrva..seenlgeeivkqllanpkalliaagvllllalvpglpklvflllaallallayllk 295
                 gm+ls+a++++tlLtiGD+Lv+qiPaLlis++ g+ivtrv+  +++nlg+ i++++++n+ +ll++a+++++l+l+pg+p  vflllaa+l+++ +  k
  EHT97994.1 220 GMDLSHAMSVFTLLTIGDALVAQIPALLISISGGLIVTRVNnsENSNLGAMILQDMFSNKFILLVTAVLAIALGLLPGFPLPVFLLLAAILFGIYIKDK 318
                 ****************************************9855599******************************************9998876544 PP

                 XXXXXX.......XXXXXXXXXXXXXX............TS-EEEEE-GGGHHHHHHT.......HHHHHHHHHHHHHSS---SEEEEE-TT--TTEEE CS
      FHIPEP 296 kkkkkeekeeekeeeeeeaeeeeeeee...eeveellk.vdplelelgyeliplvdeeqggeLlerikalrkqlaeelGlvvpeirirdnlelkpneyr 390
                  ++k+ +k ++  +eee+++   +  +       e +  + pl ++  ++  ++++e++        + l+++++ e+G+ ++e+ ++ + ++++ + +
  EHT97994.1 319 IDEKRGKKPAAP-AEEEDEQPVLK--SkpvMIDGEYIPeTIPLIISAWKGYEEYFKEHN------LCSLLKRNFFIEYGVRLQEVVMNYDEHIERGKLT 408
                 443222222222.22222222222..122322223333355666666666666666654......678899**************************** PP

                 EEETTEEEEEEE--TTSEEET........-.-EEEEETTE...EEEEE-HHHHHHHHTTT--EEEHHHHHHHHHHHHHHHCHHHCHCHHHHHHHHHHHH CS
      FHIPEP 391 ikikgvevaegelkpdkllalnpgevee.l.egeetkepafglpavwieeeqreeaeaagytvvdpssvlathlsevikrhaaellgrqevkklldelk 487
                 + i++++va  ++ p+++ +l  ge+ + + + +++ e a +  a+w++e+++++a + g+   ++ +  + ++s+++ ++++e++g+qe+k+lld+l+
  EHT97994.1 409 VAINEIRVAAYDILPGMCKVLLRGEELQvMdDSVQAVETA-QGVAYWVPESHSQTALELGFYSRSAVDECYACISTLLVHNISEFFGIQEAKTLLDDLE 506
                 ********************98888855453555555555.5579****************************************************** PP

                 TTHHHHHHHHH.HHS-HHHHHHHHHHHHCTTXXXXXHHHHHHHHHHHTTTXXSHHHHHHHHHHHTHHHHHHHHH.TTSXEEEEEEXHHHHHHHHHHEEE CS
      FHIPEP 488 keapklveelvpkllslgelqkvLqnLlkErvsirdlrtIletlaeaakktkdvellteavRqaLkrqivqklaeedgelkvitldpeleqalaeslkq 586
                 k++p+l++e++ ++++++++++v+q+Ll+Er+sir++r+Ile+l+++a+k+kd+ +l+e+vR  L+r+i++++a  +g+++ +++++++e  ++  ++q
  EHT97994.1 507 KKYPELLKECY-RNTTVQRITEVFQRLLQERISIRNMRLILEALVQWAPKEKDPIMLVEHVRGVLSRYISNRFA-VNGQIRTLVMSHDMEGLVRGGIRQ 603
                 ***********.99***********************************************************9.599********************* PP

                 SSSE..EEXXXHHHHHHHHHHHHHHH.CXXSXGGGXEEEEXCCCHHHHHHHHCTTXTTXEEEETCCCTTXS CS
      FHIPEP 587 segegsalalepelaeklleklkeavekleekgekpvllvspevRrllrkllerelpelaVlsynEieeev 657
                 ++g g++++l p ++e+++++l+  +++   + ++++l+vs ++Rr+++k++e ++pe++Vlsy +++++v
  EHT97994.1 604 TSG-GTFINLAPPETENIIQSLEICIRSNDVNARDIILMVSLDIRRFVKKIIEGSYPEMEVLSYGDVASDV 673
                 774.57*************************************************************9886 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   4.2         2   1.8e+04      11      19 ..      21      29 ..      15      55 .. 0.66
   2 ?   -0.1   0.3      0.16   1.4e+03       6      26 ..     110     130 ..     108     143 .. 0.81
   3 ?   -3.2   0.6       1.5   1.4e+04       8      19 ..     198     209 ..     197     210 .. 0.84
   4 ?   13.3   0.0   1.1e-05     0.095      14      62 ..     302     352 ..     300     366 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 2
   OAD_gamma 11 mgvVFvvLi 19
                m++V v+Li
  EHT97994.1 21 MIMVVVMLI 29
                333333333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
   OAD_gamma   6 ltllGmgvVFvvLilLslvis 26 
                 ++++G+++ F+v i+ ++vi+
  EHT97994.1 110 NLVVGFVIFFIVTIVQYIVIT 130
                 778888888888888887775 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
   OAD_gamma   8 llGmgvVFvvLi 19 
                 + G++++Fv Li
  EHT97994.1 198 IAGIIIIFVNLI 209
                 679999999998 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 1.1e-05
   OAD_gamma  14 VFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa..elddd 62 
                 VF+ L+ + + i++  ki  k  kk++++a+++ +++  +++++  + +  
  EHT97994.1 302 VFLLLAAILFGIYIKDKIDEKRGKKPAAPAEEEDEQPVLKSKPVmiDGEYI 352
                 9*******************************9999998887655544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4619.69
//
Query:       EHT97995.1  [L=135]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-19   67.9   0.3    9.2e-19   67.3   0.3    1.4  1  Invas_SpaK  Invasion protein B family


Domain annotation for each model (and alignments):
>> Invas_SpaK  Invasion protein B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.3   5.1e-23   9.2e-19       1      74 [.      17      92 ..      17     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 5.1e-23
                T--GGGB----SSSEEEEEE.TTS--EEEEEETTEEEEEEE--TTHHHHHHHCHHHHHHHHCT-.-TTBGGGS-EE CS
  Invas_SpaK  1 GcdpsllgnlDsHStItLdl.ddkPsIiistqddevwlWsslaededaaLqqrsanlLklllea.aeyaitgkleL 74
                G+++ l  +l +HStI L + +d P I+is ++devw+W+++ e+  + L+ +sa+lL+l++++  +++  g++ L
  EHT97995.1 17 GISDILDSDLNNHSTISLAMkNDIPTIHISEENDEVWVWAKVMENAPTSLAYCSASLLPLMMNHqEDFFHIGQPCL 92
                88999999************99*****************************************9899**9999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 974.60
//
Query:       EHT97996.1  [L=431]
Description: type III secretion system cytoplasmic ATP synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-72  243.4   0.0    2.5e-72  243.0   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    6.4e-18   64.4   0.7    1.2e-17   63.5   0.7    1.5  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
      3e-05   24.1   0.0      6e-05   23.1   0.0    1.4  1  ATPase_2       ATPase domain predominantly from Archaea
     0.0055   17.2   0.0      0.011   16.3   0.0    1.5  1  ABC_tran       ABC transporter
  ------ inclusion threshold ------
       0.12   12.7   0.1       0.56   10.6   0.1    2.3  1  AAA_16         AAA ATPase domain
       0.13   12.7   0.1       0.53   10.7   0.1    2.1  1  AAA            ATPase family associated with various cellular
       0.14   12.4   0.0       0.29   11.4   0.0    1.5  1  AAA_22         AAA domain
       0.17   11.9   0.0       0.54   10.3   0.0    1.7  2  DUF87          Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.0   0.0   1.1e-75   2.5e-72       1     213 []     141     350 ..     141     350 .. 0.99

  Alignments for each domain:
  == domain 1  score: 243.0 bits;  conditional E-value: 1.1e-75
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlAE 98 
                  G+r++D l++++qGqr++i++a+g+Gkt ++++++++s++d + ++ +iGerg+ev+e++ee+++++   + +lv++ts+++ ++r  ++ +++t+AE
   EHT97996.1 141 GVRTIDGLLTCGQGQRMGIFAAAGCGKTSLMSMIIEHSEAD-IYVIGLIGERGREVTEFVEELKHSSRRLQIILVYATSDRSCVERCNAAQIATTIAE 237
                  89***********************************9888.******************************************************** PP

                  HHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  99 yfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivLdkk 196
                  +f +qgknvll++ds++r+a+Alr+++l++ge pa++gypa+++  l++l+ER g++   +Gs+t++++v +++++ sd + +++++i+dg+i+L+kk
   EHT97996.1 238 FFSEQGKNVLLFMDSITRYARALRDVALSMGELPARRGYPASVFEALPKLLERPGRF--LRGSITAFYTVLIENEEESDVIGDEVRSILDGHIYLSKK 333
                  *********************************************************..77************************************* PP

                  HHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 197 laqrkhfPainvlvSvS 213
                  la+++h+Pai+v++S+S
   EHT97996.1 334 LAAKGHYPAIDVMQSIS 350
                  ***************98 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.7   5.4e-21   1.2e-17       1      70 [.     357     426 ..     357     428 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 5.4e-21
  T3SS_ATPase_C   1 vspehlqaarklrellatyqenedLiniGaYkkGsdpelDeAiakrpainafLkQgvdekvsfeetlaqL 70 
                    +s++h+ +a+++r+ l + +++++++++G+Y++G++++ D+A +++++++afL+Q+++ek+ ++++l++L
     EHT97996.1 357 TSEDHQVLATRFRKFLVRQKDMQLYLDLGEYRRGENTDNDAAFDRKDQMEAFLQQRMSEKTGMQACLEAL 426
                    699****************************************************************998 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.7e-08     6e-05      14     128 ..     148     254 ..     140     271 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.7e-08
    ATPase_2  14 ilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekal.giavpkaeleeilkeksklvfkaiellle 111
                 +l  ++ + + i+   g+GKt+L+  iie +e      iy+i l +e+  +++ef+ee + +++  + +   a+   +       ++ ++ +  + + e
  EHT97996.1 148 LLTCGQGQRMGIFAAAGCGKTSLMSMIIEHSE----ADIYVIGLIGERGREVTEFVEELKHSSRRLQIIlVYATSDRSC-----VERCNAAQIATTIAE 237
                 5555556666688889*************994....479****************997666665555552222222222.....244566777777777 PP

    ATPase_2 112 kikkkgkkiiiiiDelq 128
                   +++gk + +++D + 
  EHT97996.1 238 FFSEQGKNVLLFMDSIT 254
                 77788888888877655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.9e-06     0.011       6      64 ..     149     212 ..     147     269 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.9e-06
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGG..B-HHHCCHCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlke..qeleslrkeigvl 64 
                 l++ +g++++i+   G+GK++L+++++++++      G i  +g++++e  +el++++++++++
  EHT97996.1 149 LTCGQGQRMGIFAAAGCGKTSLMSMIIEHSEAdiyVIGLIGERGREVTEfvEELKHSSRRLQII 212
                 57889**********************9998844445555555666666666666666665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00025      0.56      31      73 ..     161     199 ..     150     383 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
      AAA_16  31 GesGvGKsslvrellralekdggif...lrgkcdqlesaipysala 73 
                  ++G+GK+sl+ ++ ++ e+d +++   + ++ ++    +++   +
  EHT97996.1 161 AAAGCGKTSLMSMIIEHSEAD-IYViglIGERGREV---TEF---V 199
                 689************999998.66644444444444...222...2 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00023      0.53       6      62 ..     162     212 ..     157     268 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
                 STTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEE CS
         AAA   6 ppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka.kpsil 62 
                   G+GKT+l++ ++++++++++ i +         e+ +++ e+++e+k+++ +  i+
  EHT97996.1 162 AAGCGKTSLMSMIIEHSEADIYVIGLIG-------ERGREVTEFVEELKHSSrRLQII 212
                 67**************876644443322.......22333333333333222222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.29      10      88 ..     159     259 ..     153     290 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee....................erpevvfvtlpsst......sskdllrellralglelkaerlsseelleal 82 
                 +++ +G+GKT l+ ++ e  +++++                       +r ++++v+++s+       + +++++ +++++ +++k+       +++ +
  EHT97996.1 159 IFAAAGCGKTSLMSMIIEHSEADIYVIGligergrevtefveelkhssRRLQIILVYATSDRscvercNAAQIATTIAEFFSEQGKN----VLLFMDSI 253
                 7999****************99999998***96666666666666555444555555555554455555555555555555543333....33333555 PP

      AAA_22  83 eqalra 88 
                 ++++ra
  EHT97996.1 254 TRYARA 259
                 555555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024      0.54      24      45 ..     155     176 ..     154     181 .. 0.92
   2 ?   -2.4   0.0       1.9   4.3e+03     131     182 ..     223     270 ..     192     294 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00024
       DUF87  24 rHlAilgsTGsGKSntvavLle 45 
                 ++++i++ +G GK+ +++ ++e
  EHT97996.1 155 QRMGIFAAAGCGKTSLMSMIIE 176
                 689*****************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
       DUF87 131 keekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsf 182
                  e+ + +++++ ++++++e      ++  l +++i r+ ++l+d+ ++ g+ 
  EHT97996.1 223 VERCNAAQIATTIAEFFSEQG----KNVLLFMDSITRYARALRDVALSMGEL 270
                 455555555555555555555....666666677777777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3196.44
//
Query:       EHT97997.1  [L=153]
Description: hypothetical protein CKS_4529 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00054   20.4   3.4    0.00085   19.7   3.4    1.3  1  HrpB7            Bacterial type III secretion protein (HrpB7)
     0.0015   19.1   7.1       0.23   12.0   1.2    2.2  2  APG6_N           Apg6 coiled-coil region
     0.0025   17.8   8.8      0.015   15.2   2.3    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
     0.0027   18.0   5.4       0.37   11.2   1.1    2.4  2  FlaC_arch        Flagella accessory protein C (FlaC)
     0.0062   15.4   7.7      0.095   11.6   2.3    2.0  2  Spc7             Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.013   15.8   7.9       0.22   11.8   0.9    2.2  2  Spc24            Spc24 subunit of Ndc80
      0.018   15.2   4.7       0.43   10.8   0.4    2.4  2  JIP_LZII         JNK-interacting protein  leucine zipper II
      0.022   14.4   8.0       0.33   10.5   1.7    2.1  2  DUF4795          Domain of unknown function (DUF4795)
      0.023   15.3   7.0      0.073   13.7   1.7    2.2  2  YabA             Initiation control protein YabA
      0.025   14.8   5.5        1.2    9.2   0.2    2.2  2  Tropomyosin_1    Tropomyosin like
      0.026   14.0   1.3      0.026   14.0   1.3    2.0  2  DUF4349          Domain of unknown function (DUF4349)
       0.04   14.1   6.9        1.4    9.1   0.6    2.2  2  GCN5L1           GCN5-like protein 1 (GCN5L1)
       0.05   13.6  10.6        0.8    9.7   1.1    2.1  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
      0.051   13.6   5.6      0.079   13.0   5.6    1.3  1  DUF1640          Protein of unknown function (DUF1640)
      0.069   13.3   8.9        1.4    9.1   1.5    2.2  2  Fib_alpha        Fibrinogen alpha/beta chain family
      0.072   12.6  16.6       0.12   11.9  16.6    1.3  1  MscS_porin       Mechanosensitive ion channel porin domain
      0.079   11.1   7.2       0.09   11.0   7.2    1.0  1  FPP              Filament-like plant protein, long coiled-coi
      0.092   12.5  10.3       0.97    9.2   1.2    2.4  2  DivIC            Septum formation initiator
      0.099   12.3   7.1        1.1    8.9   2.0    2.1  2  GrpE             GrpE
        0.1   12.3   1.9       0.21   11.2   0.3    2.2  2  Vac_Fusion       Chordopoxvirus multifunctional envelope prot
       0.12   12.4   4.8        4.5    7.3   0.7    2.2  2  DUF1664          Protein of unknown function (DUF1664)
       0.13   11.4   5.3       0.16   11.1   5.3    1.1  1  Tho2             Transcription factor/nuclear export subunit 
       0.14   10.1   4.9       0.16    9.9   4.9    1.0  1  Prominin         Prominin
       0.15   11.9  14.1        0.6    9.9  14.0    1.8  1  SPAM             Salmonella surface presentation of antigen g
       0.34   10.9   6.2       0.81    9.7   0.4    2.2  2  Phage_int_SAM_6  Phage integrase SAM-like domain
       0.39   11.2   3.6         13    6.3   0.3    2.3  2  DUF4140          N-terminal domain of unknown function (DUF41
       0.47   10.9   7.0       0.81   10.1   2.2    2.2  2  E2F_CC-MB        E2F transcription factor CC-MB domain
        0.6   10.3   5.8        3.9    7.7   0.8    2.1  2  PI_PP_I          Phosphoinositide phosphatase insertion domai
       0.67    9.5  11.4          5    6.6  11.5    1.9  1  Exonuc_VII_L     Exonuclease VII, large subunit
       0.93    9.8  12.7      0.079   13.2   2.0    2.4  2  KxDL             Uncharacterized conserved protein
       0.97    8.0   7.4        1.2    7.7   7.4    1.2  1  FapA             Flagellar Assembly Protein A
        1.1    9.2  11.9       0.16   11.9   3.4    2.1  2  Ax_dynein_light  Axonemal dynein light chain
        1.4    9.2   7.5          1    9.6   1.4    2.2  2  BORCS7           BLOC-1-related complex sub-unit 7
        1.6    8.3  16.7         10    5.7  16.7    1.9  1  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
        1.6    8.5  10.9        3.9    7.3   2.5    2.0  2  DUF724           Protein of unknown function (DUF724)
          2    8.3  11.5        5.3    7.0   2.0    2.3  2  Prefoldin        Prefoldin subunit
        2.2    8.5   7.7       0.73   10.0   0.2    3.0  3  DegQ             DegQ (SacQ) family
        3.8    6.8   8.0         35    3.6   8.0    1.9  1  DUF4407          Domain of unknown function (DUF4407)
          5    7.8  12.8        6.8    7.4   3.3    2.3  2  SlyX             SlyX
        5.9    6.9  18.6       0.51   10.3   3.2    2.9  3  Prefoldin_2      Prefoldin subunit


Domain annotation for each model (and alignments):
>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   3.4   1.9e-06   0.00085      20     151 ..      14     144 ..       5     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.9e-06
       HrpB7  20 lraeleaaraalaaaeaalaaaqaqveaardavraheerlddlttgsspfsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaR 118
                 l+ +++  +++  + e++la+ + q+++ +++  +++++++ lt ++  +s ad+    +  ++l  + + +  ++ +++ + ++ e + ++ ++ +  
  EHT97997.1  14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLTPAGV-MSRADIYKGIRKQGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQ 111
                 67788999999***********************************95.77777766666666666666666666666655555444444444444444 PP

       HrpB7 119 ndaqidacrerierlrraaeraredaadEEaeE 151
                 +d +  + +  ++ lrr++ r+ ++aa++E+ E
  EHT97997.1 112 LDKKHYKLNYYLQPLRRDYIRRCDNAAENEIQE 144
                 44444455555789****************998 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.5    0.0013      0.58      59      97 ..      14      52 ..       4      57 .. 0.80
   2 !   12.0   1.2   0.00051      0.23      68      98 ..      86     116 ..      63     146 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0013
      APG6_N 59 lekeeeelleeLkelekereeleaelaaleeelealeee 97
                le++++ l++ + ++e+  ++++ +++++++e ++++++
  EHT97997.1 14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQ 52
                778888888888888888888888888888888888776 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00051
      APG6_N  68 eeLkelekereeleaelaaleeelealeeee 98 
                  ++++le+e+++le   ++l++   +l+++ 
  EHT97997.1  86 HKINQLESEQQKLEHNKEQLRASMTQLDKKH 116
                 4444444444444444444444444444432 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5     0.018         8      36      68 ..      19      51 ..       5      56 .. 0.68
   2 !   15.2   2.3   3.4e-05     0.015      13      52 ..      87     126 ..      86     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.018
  TMF_DNA_bd 36 kkLrkknkelekeikelkkkleklekeleelee 68
                  L++++ ++e+++++ + +++++++e++ +++
  EHT97997.1 19 QVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQ 51
                446777777777777777777777777777666 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.4e-05
  TMF_DNA_bd  13 qIaqLmeEGekLskkelklnntikkLrkknkelekeikel 52 
                 +I+qL +E +kL+++  +l++++ +L+kk  +l++ ++ l
  EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPL 126
                 7****************************99988776655 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   1.1   0.00083      0.37       5      40 ..      21      56 ..      17      58 .. 0.86
   2 !    8.6   0.2    0.0054       2.4       1      33 [.      87     119 ..      87     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00083
   FlaC_arch  5 lEnklsklsteletvkkeneelsksveelkenVkdl 40
                l++++ k++ +l+ v  ++++ +++  ++++++k+l
  EHT97997.1 21 LQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56
                788899999999999999999999999999999987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0054
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveel 33 
                 +i++lE++ +kl+ + e +++++ +l k+  +l
  EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDKKHYKL 119
                 789999999999999999999999988876666 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3    0.0039       1.8     214     251 ..      17      54 ..       5      70 .. 0.60
   2 !   11.6   2.3   0.00021     0.095     144     203 ..      84     144 ..      73     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0039
        Spc7 214 eieekkkelaelqeqleeleekieelkeqkseleeeia 251
                 + + +++++ + ++ l++++ +i++ +++ s+++++i+
  EHT97997.1  17 KQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIK 54 
                 44444555555555555555555555555555555554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00021
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.aaeelesidkeeLee 203
                 + +++++le+++++Le+++e+l + + +l++++ +l+  l+ l++   + +++  ++e++e
  EHT97997.1  84 VFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPLRRdYIRRCDNAAENEIQE 144
                 5578999***********************************9994455566666666554 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.1    0.0062       2.8       2      62 ..      14      70 ..      13      74 .. 0.73
   2 ?   11.8   0.9   0.00048      0.22       9      43 ..      84     118 ..      76     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0062
       Spc24  2 ldnekfriakelsdleselesleselaelkeeleeleeeseekeserve.detllklklYrs 62
                l+++++ +++++ ++e++l +++ + ++ ++e+ +++++ +           ++ ++ +Y+ 
  EHT97997.1 14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKM-----LTpAGVMSRADIYKG 70
                566777777888888888888888888888888888888777.....444777777777765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00048
       Spc24   9 iakelsdleselesleselaelkeeleeleeesee 43 
                 +  ++++lese ++le+++++l++ +++l+++  +
  EHT97997.1  84 VFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYK 118
                 56789999999999999999999999999988655 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.4     0.027        12      38      70 ..      14      46 ..      11      47 .. 0.91
   2 ?   10.8   0.4   0.00096      0.43      32      66 ..      85     119 ..      73     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.027
    JIP_LZII 38 LtsereiLreEleslqkakerlesrikelEeel 70
                L   +++L++++ ++++++++++ +i++ ++e+
  EHT97997.1 14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEF 46
                778999**********************99985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00096
    JIP_LZII  32 IarvdeLtsereiLreEleslqkakerlesrikel 66 
                   ++ +L se++ L++  e+l+++ ++l ++  +l
  EHT97997.1  85 FHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKL 119
                 6799**********************999987665 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.5    0.0053       2.4      17      54 ..      19      56 ..       6      64 .. 0.60
   2 ?   10.5   1.7   0.00074      0.33       7      60 ..      86     140 ..      76     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0053
     DUF4795 17 eklqeelekleekvkelekrledkekklealkkqieel 54
                + lq+++ k e++ ++++ +++++++++  + +qi+ l
  EHT97997.1 19 QVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56
                44555555555555555555555555555555555554 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00074
     DUF4795   7 ellkklqeaieklqeelekleekvkelekrledkekklealk.kqieelekvkad 60 
                 + +++l+++ +kl+ ++e+l  ++++l+k++ ++ + l+ l+ ++i++++++ ++
  EHT97997.1  86 HKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPLRrDYIRRCDNAAEN 140
                 568999999**************************99999862578888887665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3     0.099        45       8      34 ..      30      56 ..      11      69 .. 0.73
   2 ?   13.7   1.7   0.00016     0.073       4      63 ..      82     141 ..      79     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.099
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  8 dkleeleeqleelleeleelkeelael 34
                ++l++++ q+++ ++e+++++++++ l
  EHT97997.1 30 NSLAQVNLQIQQYQQEFSDINQQIKML 56
                456667777777777777777776654 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXX CS
        YabA   4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekk 63 
                 + +f+k+++le++ ++l ++ e+l++++++l +++ +L+   + lr+   ++ ++++e++
  EHT97997.1  82 QYVFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPLRRDYIRRCDNAAENE 141
                 66899****************************************999833333333333 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0028       1.2      19      58 ..      14      53 ..       4      61 .. 0.57
   2 ?    7.6   1.3    0.0086       3.9      14      47 ..      86     119 ..      74     146 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0028
  Tropomyosin_1 19 leekvKeleqenlekeqeiksLtkknqqleeevekleekl 58
                   le k + l+q+ ++ e+ +++ + ++qq ++e   +++++
     EHT97997.1 14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQI 53
                   3444444555555555555555555555555555555554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0086
  Tropomyosin_1  14 ekaeeleekvKeleqenlekeqeiksLtkknqql 47 
                    +k ++le++ ++le+++++    +++L kk  +l
     EHT97997.1  86 HKINQLESEQQKLEHNKEQLRASMTQLDKKHYKL 119
                    3445555555555555555555555555554444 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.3   5.7e-05     0.026     108     149 ..      13      56 ..       8      59 .. 0.86
   2 ?    1.5   0.2      0.39   1.7e+02     123     156 ..      89     122 ..      86     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.7e-05
     DUF4349 108 llekaksv..edlleiereLsevqaeieslegqlryLdnqvays 149
                 +le++++v  +d+++ e+ L++v+ +i ++++++  +++q+ + 
  EHT97997.1  13 MLERKQQVlqQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56 
                 56665554448******************************996 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.39
     DUF4349 123 reLsevqaeieslegqlryLdnqvaystvtvtlr 156
                 ++L++ q+ +e  + qlr+   q +    +++++
  EHT97997.1  89 NQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYY 122
                 5788888899999999888888888777777766 PP

>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.9    0.0049       2.2      46      87 ..      15      56 ..       6      58 .. 0.89
   2 ?    9.1   0.6    0.0031       1.4      38      72 ..      84     118 ..      69     129 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0049
      GCN5L1 46 yanqkklekeakalqanvakfakqtdqWlalvesfnsalkei 87
                 ++q+ l +++ + ++++a+++ q +q+ + ++++n+++k +
  EHT97997.1 15 ERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56
                5789999999*****************************965 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0031
      GCN5L1  38 lnsgvaeayanqkklekeakalqanvakfakqtdq 72 
                 + ++++++ ++q+kle++  +l+a+++++ k+  +
  EHT97997.1  84 VFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYK 118
                 44566777777777777777777777777776544 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.1    0.0018       0.8      20      66 ..      12      58 ..       1      74 [. 0.83
   2 ?    8.9   1.9    0.0032       1.4      24      51 ..      86     113 ..      72     133 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
  CENP-F_leu_zip 20 dsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelae 66
                      L+ k + L++++   e+++ +v l+  + ++e + ++++i++l+ 
      EHT97997.1 12 GMLERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLTP 58
                    567888889999999999999*******************9999985 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0032
  CENP-F_leu_zip  24 dkvenLerelemseenqekvileaEtsk 51 
                      k+++Le+e + +e+n+e++   + +  
      EHT97997.1  86 HKINQLESEQQKLEHNKEQLRASMTQLD 113
                     4666666666666666666654443333 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.6   0.00018     0.079      27     131 ..      17     145 ..       9     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00018
     DUF1640  27 ltevlneslekvakslvskselekseylqkaalselrkevqise...........................rsefaalrseteklqreleklkqkLree 98 
                  ++vl++ + k ++sl +  +++ ++++++ ++s + +++++++                            +++++l+se++kl+++ e+l+ ++ + 
  EHT97997.1  17 KQQVLQQDIVKTENSL-A--QVNLQIQQYQQEFSDINQQIKMLTpagvmsradiykgirkqgallthqqyvFHKINQLESEQQKLEHNKEQLRASMTQL 112
                 4455555555555554.3..3455555556679**************************************9************************995 PP

     DUF1640  99 idklkadirldlnleKgrireelakleakiqel 131
                  +k  +       l++  ir   ++ e++iqe+
  EHT97997.1 113 DKKHYKLNYYLQPLRRDYIRRCDNAAENEIQEM 145
                 555555455556789999999999999999987 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5    0.0031       1.4      85     128 ..      13      56 ..       6      61 .. 0.64
   2 ?    8.6   1.1    0.0043       1.9      23      69 ..      74     120 ..      70     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0031
                 HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  85 eleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128
                 +le++++ l++ i+++e+++ +    +++ +q+ ++++q+i+ +
  EHT97997.1  13 MLERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56 
                 66666666666666666666666666666666666666666554 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0043
                 HHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  23 qdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekq 69 
                 q++ll++++ v +++++le+e +++++++++ +  ++++++++ + +
  EHT97997.1  74 QGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLN 120
                 67888999999999999999999999999999988888877655443 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  16.6   0.00027      0.12      98     206 ..      15     129 ..      12     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
  MscS_porin  98 qeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaage......alsqaqrtalqaelaaleaqieeleqellsnnnrqeLlklqrdllk 190
                 +++++ l++++v+++++++++  q+ + +q+ ++i+++++ + +ag            ++ al + +++   +i++le e++      e l++   +l 
  EHT97997.1  15 ERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLTPAGVmsradiYKGIRKQGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQLD 113
                 6778889999999999999999999999999999999998888888755554333456899************************************** PP

  MscS_porin 191 lriqqleqelqaLqel 206
                 +++ +l+ +lq L+  
  EHT97997.1 114 KKHYKLNYYLQPLRRD 129
                 ***********99865 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   7.2    0.0002      0.09     700     824 ..      14     138 ..       2     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
         FPP 700 lksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleaelnelkqkieaLeveLeeekksheel 798
                 l+ +++ l+ ++ + +++l ++++q+q+  q  +++++++++l  +  +   ++ +    +  l t+++ + +++n+l+++ ++Le++ e+ + s+ +l
  EHT97997.1  14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLTPAGVMSRADIYKGIRKQGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQL 112
                 45566779999**************************************************************************************** PP

         FPP 799 eakckelqeqlervekkevskssaee 824
                   k  +l+  l+  +++   +++ + 
  EHT97997.1 113 DKKHYKLNYYLQPLRRDYIRRCDNAA 138
                 ****9999999988765555444433 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.3    0.0049       2.2      17      50 ..      23      56 ..      13      74 .. 0.69
   2 ?    9.2   1.2    0.0022      0.97      15      56 ..      84     130 ..      76     134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
                XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC 17 laykqlkqeiaalqaelaklkaeneeLeaevkdL 50
                +++ ++++ +a+ + ++++ ++e  + ++++k L
  EHT97997.1 23 QDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56
                4555666666666666666666666666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0022
                 XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX......XXXX CS
       DivIC  15 gllaykqlkqeiaalqaelaklkaeneeLeaevkdLks......dedy 56 
                  ++++ ql++e ++l+++ ++l+a   +L+++  +L +       +dy
  EHT97997.1  84 VFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKL-NyylqplRRDY 130
                 567777888888888888888888888887777777.33555555555 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.014       6.4       5      43 ..      16      54 ..       9      69 .. 0.69
   2 ?    8.9   2.0    0.0025       1.1       7      65 ..      88     146 ..      82     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
                ..CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTT CS
        GrpE  5 eeeeeeedeeeeleeeleelekevkelkekllrllaefe 43
                 +++ +++++ + e+ l++ + +++++++++   +++++
  EHT97997.1 16 RKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIK 54
                455666666666666666666677766666666666554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0025
                 CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHH CS
        GrpE   7 eeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfa 65 
                  +++e e+++le + e+l++ + +l +k  +l+  ++ lr+ + ++ ++a++ +i+++a
  EHT97997.1  88 INQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPLRRDYIRRCDNAAENEIQEMA 146
                 5677888999999999999999999999999*****************99999999875 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.6   7.3e+02       6      28 ..      15      37 ..      11      56 .. 0.64
   2 ?   11.2   0.3   0.00047      0.21       9      50 ..      74     115 ..      66     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.6
                HHHHHHHHHHHHHHHHHHHHHHH CS
  Vac_Fusion  6 eerllvlekdfqlvikcckrvne 28
                e++  vl++d  +++++  +vn 
  EHT97997.1 15 ERKQQVLQQDIVKTENSLAQVNL 37
                55556666666666666555554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00047
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-XXXXXXXXXXXXXXX CS
  Vac_Fusion   9 llvlekdfqlvikcckrvnealkRlEnHleTlRkamlaLakK 50 
                    l +  q v+ +  + +   + lE   e lR++m +L kK
  EHT97997.1  74 QGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQLDKK 115
                 56678888899999999************************9 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7      0.01       4.5      70     113 ..      13      56 ..       5      59 .. 0.68
   2 ?    7.2   0.2     0.011         5      48      77 ..      89     118 ..      69     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.01
     DUF1664  70 rvdkkldeqkeiskeikeevtevredlseigedvesvkeavegl 113
                  +++k++  ++ + ++++ +++v+ ++++ +++++ +++ ++ l
  EHT97997.1  13 MLERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56 
                 55666666666666777777777777777777777777776655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.011
     DUF1664  48 kqleqvseslaatkrhLssridrvdkklde 77 
                 +qle+ +++l++ k++L + + ++dkk  +
  EHT97997.1  89 NQLESEQQKLEHNKEQLRASMTQLDKKHYK 118
                 567777777777777777777777776544 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.3   0.00036      0.16      16      96 ..      31     118 ..      20     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
        Tho2  16 slyDiyvpkeqYekeieklkseieel.......akdrsderaaakkkkkekkrlkel.......iekLeeEkkeqiehvekvkkrLkeekkswfk 96 
                 sl  ++   +qY++e + ++++i+ l       +       a++ k  +++  l ++       i++Le+E+++ ++++e+ ++ +++  k+  k
  EHT97997.1  31 SLAQVNLQIQQYQQEFSDINQQIKMLtpagvmsR-------ADIYKGIRKQGALLTHqqyvfhkINQLESEQQKLEHNKEQLRASMTQLDKKHYK 118
                 677888999*****************66665541.......444443333333322222233337777777777777777777777666555444 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.9   0.00035      0.16     172     301 ..      15     139 ..       9     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
    Prominin 172 eesketvkrgledlrtflkdvpqhidhvlvqnyeelekhvsddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgs 270
                 e+ ++ +++ +  + + l +v+ +i++  ++ ++ ++ + +++L+ ag     d+ + ++++    L++ + +++++++ + + +++++++++Lr s++
  EHT97997.1  15 ERKQQVLQQDIVKTENSLAQVNLQIQQYQQE-FSDIN-QQIKMLTPAGVMSRADIYKGIRKQ-GALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMT 110
                 6677778888889999999*******98777.****9.77789*****99999**9999999.889999999999999999999999999999999999 PP

    Prominin 271 qLrdglrgvkrdlnqalsnlCqseeCskils 301
                 qL +   +    l+ +  + ++  +C+++ +
  EHT97997.1 111 QLDKKHYKLNYYLQPLRRDYIR--RCDNAAE 139
                 9987655554444444444444..5655555 PP

>> SPAM  Salmonella surface presentation of antigen gene type M protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  14.0    0.0013       0.6      19     138 ..      31     142 ..      11     144 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
        SPAM  19 allqlkdeereldkeeeaieeqragLkeLLdlqrpegksldreelyallrkqaivrrqlkeLeLqlvaiqekrselqkekeelskkskyWLrkedkyrr 117
                  l       ++++ + ++ +++  ++ + ++++ p+g  ++r ++y   rkq  +    + +  ++ +++  +++l+++ke+l+    +  +k  k + 
  EHT97997.1  31 SL-------AQVNLQIQQYQQEFSDINQQIKMLTPAGV-MSRADIYKGIRKQGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNY 121
                 22.......23333333333444455556667789999.*************999999999999********************************999 PP

        SPAM 118 Wqkvqkrlarlaelkqeetes 138
                 + +  +r ++ +  ++ e e 
  EHT97997.1 122 YLQPLRRDYIRRCDNAAENEI 142
                 999999999888777777665 PP

>> Phage_int_SAM_6  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4    0.0018      0.81      19      66 ..      15      62 ..      10      78 .. 0.89
   2 ?    3.9   1.1      0.11        50      15      49 ..      81     118 ..      66     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
  Phage_int_SAM_6 19 kskltsLsnkqvkdkealakviqelkkgvksieelekivkeaRniGli 66
                     + k + L +  vk +++la+v+ ++++ +++++++++ +k    +G++
       EHT97997.1 15 ERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLTPAGVM 62
                     56788899999*****************************99888875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
  Phage_int_SAM_6  15 erfvkskltsLsnkqv...kdkealakviqelkkgvks 49 
                      +++v +k+++L ++q    ++ke+l  ++++l k+  +
       EHT97997.1  81 QQYVFHKINQLESEQQkleHNKEQLRASMTQLDKKHYK 118
                      789999**999876642235889999999999887555 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3     0.029        13      65      98 .]      22      56 ..      10      56 .. 0.77
   2 ?    5.7   0.2     0.043        19      66      93 ..      87     114 ..      68     118 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.029
     DUF4140 65 ee.lkalraeleeledelaaledelaaaearlafl 98
                ++ + +++++l +++ +++++++e + +++++++l
  EHT97997.1 22 QQdIVKTENSLAQVNLQIQQYQQEFSDINQQIKML 56
                33388899999999999999999999999999886 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.043
     DUF4140  66 elkalraeleeledelaaledelaaaea 93 
                 ++++l++e ++le  +++l+++++ +++
  EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDK 114
                 5777777888888877777777776665 PP

>> E2F_CC-MB  E2F transcription factor CC-MB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.21        95      13      36 ..      19      43 ..       9      72 .. 0.56
   2 ?   10.1   2.2    0.0018      0.81       4      54 ..      87     140 ..      84     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.21
   E2F_CC-MB 13 qkLDelieklteqlknltedekn.q 36
                q L + i k +++l +++ + ++ q
  EHT97997.1 19 QVLQQDIVKTENSLAQVNLQIQQyQ 43
                5555555555555555532222212 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0018
   E2F_CC-MB   4 elesleeeeqkLDelieklteqlknltedeknqlaY....vtyedirsiasfkeq 54 
                 ++++le+e+qkL++  e+l+ ++ +l +++ + l Y    ++++ ir++++ +e+
  EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDKKHYK-LNYylqpLRRDYIRRCDNAAEN 140
                 689***********************555444.5554777888888887766655 PP

>> PI_PP_I  Phosphoinositide phosphatase insertion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.4     0.052        23       8      48 ..      14      54 ..       9      59 .. 0.85
   2 ?    7.7   0.8    0.0087       3.9       8      57 ..      77     126 ..      75     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.052
                S-HHHHHHHHC--TT--SHHHHHHHHHHHHHHHHHHHHH-S CS
     PI_PP_I  8 LeeyqqaYflnleskeaslkklkqdlnqfllkWeeikktsl 48
                Le  qq+    + ++e+sl++++ +++q+ +++++i+++  
  EHT97997.1 14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIK 54
                677888888899999********************998754 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0087
                 S-HHHHHHHHC--TT--SHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHH CS
     PI_PP_I   8 LeeyqqaYflnleskeaslkklkqdlnqfllkWeeikktslsLeedLnki 57 
                 L  +qq  f+++++ e + +kl+++  q+  + +++ k+  +L+  L+ +
  EHT97997.1  77 LLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPL 126
                 66789999999999999999999999999999999999999998888765 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.5     0.011         5     167     250 ..      21     120 ..       5     148 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
  Exonuc_VII_L 167 kkqrleklasrlkspeellerkrqrldeleerleralkkq...........lkkkrerleelkerlk..ekleekkerlkklkerle....lleekk 246
                    +q + k++++l++ + ++++ +q++++++++++   + +           ++k+ + l++ +  ++  ++le+++++l++ ke+l+    +l++k+
    EHT97997.1  21 LQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKML-TPAgvmsradiykgIRKQGALLTHQQYVFHkiNQLESEQQKLEHNKEQLRasmtQLDKKH 116
                   333444455555555555555555555555555552.222222222222222222222222221111233333333333222222222222222222 PP

  Exonuc_VII_L 247 erle 250
                    +l+
    EHT97997.1 117 YKLN 120
                   2222 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.0   0.00018     0.079      16      65 ..       5      54 ..       1      58 [. 0.91
   2 ?    1.9   3.3       0.6   2.7e+02      13      59 ..      69     114 ..      59     129 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00018
        KxDL 16 alQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLe 65
                ++ ++ +g l+ k++ L++ + ++++ la+++ +++q+++  ++++++++
  EHT97997.1  5 RKGREFVGMLERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIK 54
                6778999************************************9999876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.6
        KxDL  13 eilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllke 59 
                 + +++Q  ++++ +   +++ +l  + q++l++ +++++  ++ l +
  EHT97997.1  69 KGIRKQGALLTHQQYVFHKINQLESE-QQKLEHNKEQLRASMTQLDK 114
                 55555555555554444444443332.44444444444444444433 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.4    0.0026       1.2     337     418 ..      30     118 ..      13     144 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0026
        FapA 337 eklkeleeeleeleeeleklkkkikklpklka..ekqlesekkeqlkklletk......eklkeeleeleeelkelkeeleskkeeakik 418
                 ++l++++ +++++++e  +++++ik l + ++  + ++ + +++q + l++++      ++l++e ++le+++++l +++ +  +++++k
  EHT97997.1  30 NSLAQVNLQIQQYQQEFSDINQQIKMLTPAGVmsRADIYKGIRKQGALLTHQQyvfhkiNQLESEQQKLEHNKEQLRASMTQL-DKKHYK 118
                 44555555555555555555555555554444333344444444444444444444445999999999999999999999888.333444 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.9       0.2        90     119     158 ..      16      55 ..       6      83 .. 0.54
   2 ?   11.9   3.4   0.00035      0.16     110     158 ..      70     118 ..      60     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
  Ax_dynein_light 119 qgkselekkikeLeeekeelekqvaelkaklealekreke 158
                      ++++ l+++i + e+  ++ + q+++ +++ ++++++ k 
       EHT97997.1  16 RKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKM 55 
                      3344444444444444444444444444444444444444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00035
  Ax_dynein_light 110 gmrkalqaeqgkselekkikeLeeekeelekqvaelkaklealekreke 158
                      g+rk+     +++ +  ki++Le+e+++le++ ++l+a +++l+k++ +
       EHT97997.1  70 GIRKQGALLTHQQYVFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYK 118
                      677777777778888899**************************99876 PP

>> BORCS7  BLOC-1-related complex sub-unit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.4    0.0023         1      60      94 ..      23      57 ..      13      62 .. 0.86
   2 ?    3.1   0.5      0.25   1.1e+02      68      97 ..      87     116 ..      66     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0023
      BORCS7 60 daienteesLkkmsllttelnyqveaisksikqle 94
                + i +te+sL +++l +++ +++ ++i+++ik+l+
  EHT97997.1 23 QDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLT 57
                34678***************************986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.25
      BORCS7  68 sLkkmsllttelnyqveaisksikqleevq 97 
                  ++++++  ++l+ ++e++  s+ ql++  
  EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDKKH 116
                 455555558999999999999999998755 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  16.7     0.022        10      13     113 ..      19     125 ..      13     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.022
  PI3K_P85_iSH2  13 eklseklrevskqlqekskeydqlkeeynkiseeiqlkrqa.leaFneaikmFeeqiklqekfskea.....qehEieklqenleqlksrlkelhs 102
                    ++l ++  ++++ l + + + +q+++e++ i+++i++   a +    ++ k  + q +l    +         e E++kl++n eql++ + +l +
     EHT97997.1  19 QVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLTPAgVMSRADIYKGIRKQGALLTHQQYVFhkinqLESEQQKLEHNKEQLRASMTQLDK 114
                    678888999999999999999999999999999999998652667788899999997765554333322433599********************* PP

  PI3K_P85_iSH2 103 skekLeedlkq 113
                    +  kL+ +l+ 
     EHT97997.1 115 KHYKLNYYLQP 125
                    *******9985 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.3     0.016       7.2     142     182 ..      14      54 ..       5      60 .. 0.68
   2 ?    7.3   2.5    0.0087       3.9     105     162 ..      82     144 ..      65     150 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
      DUF724 142 lerqlallkekkeaadkeiarlkseaekleeeledveqeFe 182
                 ler++++l+++  + ++++a+++ + +++++e +d++q+ +
  EHT97997.1  14 LERKQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIK 54 
                 66777777777777777777777777777777777766655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0087
      DUF724 105 tklleerkklekkieeeesekrkleeeidelekkilelerqlallk.....ekkeaadkeiar 162
                 + + +++++le++ ++ e++k++l +++ +l+kk  +l+  l+ l+     +  +aa++ei +
  EHT97997.1  82 QYVFHKINQLESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPLRrdyirRCDNAAENEIQE 144
                 333344444444444444444444444444444444444444444455554555555555555 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.3     0.018       8.2      81     113 ..      20      52 ..      12      58 .. 0.52
   2 ?    7.0   2.0     0.012       5.3      84     112 ..      86     114 ..      81     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  81 llkkkleelekqlekleeeleklkdqittlean 113
                 +l++ + + e++l +++ ++++ +++   ++++
  EHT97997.1  20 VLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQ 52 
                 445555555555555555555555555555555 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  84 kkleelekqlekleeeleklkdqittlea 112
                  k+++le+ ++kle++ e+l++ +t+l +
  EHT97997.1  86 HKINQLESEQQKLEHNKEQLRASMTQLDK 114
                 6999******************9999865 PP

>> DegQ  DegQ (SacQ) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2    0.0016      0.73      16      38 ..      21      43 ..      13      46 .. 0.89
   2 ?    1.4   0.8      0.78   3.5e+02      29      42 ..     104     117 ..      87     121 .. 0.71
   3 ?   -1.9   0.0       8.3   3.7e+03      17      22 ..     139     144 ..     138     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0016
        DegQ 16 LEneirETtdSLrniNKSiDQyD 38
                L  +i  T +SL ++N  i Qy 
  EHT97997.1 21 LQQDIVKTENSLAQVNLQIQQYQ 43
                789******************96 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.78
        DegQ  29 niNKSiDQyDKYeY 42 
                 ++  S+ Q+DK +Y
  EHT97997.1 104 QLRASMTQLDKKHY 117
                 45568999999888 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 8.3
        DegQ  17 EneirE 22 
                 Enei+E
  EHT97997.1 139 ENEIQE 144
                 99**99 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.0     0.079        35     125     182 ..      92     149 ..       9     152 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.079
     DUF4407 125 eqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkg 182
                 e+ +++l+   ++l+a  ++l+++  +++  l+ lr+++ + +d++  ++++ +aG+g
  EHT97997.1  92 ESEQQKLEHNKEQLRASMTQLDKKHYKLNYYLQPLRRDYIRRCDNAAENEIQEMAGYG 149
                 1122224444455555555777777777777777777777777777777777777776 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.3     0.015       6.8      11      51 ..      17      57 ..      11      66 .. 0.56
   2 ?    5.9   2.0     0.044        20       4      33 ..      87     116 ..      76     145 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.015
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
        SlyX 11 klafqedtieeLndvvaeqqqqidrlqrqlrllaerlkele 51
                k   +++ i +  + +a+ + qi++ q+++  +++++k l 
  EHT97997.1 17 KQQVLQQDIVKTENSLAQVNLQIQQYQQEFSDINQQIKMLT 57
                44455555555555555555555555555555555555554 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   4 rleeLEiklafqedtieeLndvvaeqqqqi 33 
                 ++++LE++   +e+  e+L + +++ +++ 
  EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDKKH 116
                 344444444444444444444444444444 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   4.6         2   9.1e+02       6      31 ..      17      42 ..      11      44 .. 0.65
   2 ?    1.9   5.9      0.47   2.1e+02       6      24 ..      38      56 ..      19      59 .. 0.63
   3 ?   10.3   3.2    0.0011      0.51      70     102 ..      87     119 ..      77     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  6 kfqqlqqqlqqlaqqikqletqlkel 31
                 k q lqq++ + ++ ++q++ q++  
   EHT97997.1 17 KQQVLQQDIVKTENSLAQVNLQIQQY 42
                 44667777777777777777777654 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  6 kfqqlqqqlqqlaqqikql 24
                 + qq+qq+ +++ qqik+l
   EHT97997.1 38 QIQQYQQEFSDINQQIKML 56
                 4566666666666666654 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0011
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2  70 rketlekeiktlekqleklekeleelkeelqkk 102
                  ++++le e ++le ++e+l++ +++l ++++k+
   EHT97997.1  87 KINQLESEQQKLEHNKEQLRASMTQLDKKHYKL 119
                  778999999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2375  (0.132467); expected 358.6 (0.02)
Passed bias filter:                      785  (0.0437838); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              40  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 1029.92
//
Query:       EHT97998.1  [L=293]
Description: hypothetical protein CKS_4528 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.001   18.3   0.6     0.0012   18.1   0.6    1.3  1  SPAN      Surface presentation of antigens protein


Domain annotation for each model (and alignments):
>> SPAN  Surface presentation of antigens protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   6.7e-08    0.0012     261     331 ..     213     287 ..     107     293 .] 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.7e-08
        SPAN 261 ssltyrfqrwgndysvni....qarqagefslipsntqvehrlhdqwqngnpqrwhltrddqqnpqqqqhrqqsg 331
                   + y fqrw  d+sv++    qa + g+++l+ps+++    l  +      +   l +  q+  +qq+  qq  
  EHT97998.1 213 LEVDYSFQRWSGDHSVKVtipaQALREGNMTLLPSDARAADALSRNLGTLAGHSPELLQPRQERDEQQKREQQPQ 287
                 3578***********986555588899*************99999887766666666655555544444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2170.85
//
Query:       EHT97999.1  [L=305]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-17   63.3   0.0      2e-10   40.5   0.0    2.2  2  FliMN_C   Type III flagellar switch regulator (C-ring) FliN C


Domain annotation for each model (and alignments):
>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.9e-08   0.00034       6      55 ..     145     191 ..     142     199 .. 0.89
   2 !   40.5   0.0   1.1e-14     2e-10       5      70 ..     224     290 ..     221     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.9e-08
                 XXEEEEEEEEEEEEEHHHHHHHHTTSEEE--TTGGGCEEEEETTEEEEEE CS
     FliMN_C   6 vpveleaelgrtrltlrellnLkvGdvipLdkpadepvevyvngkpiarG 55 
                 +p +l++ lg++rl+l++l++ ++Gd + + +p   +  ++v+ + i+r 
  EHT97999.1 145 IPYPLQCSLGSSRLSLSQLMDVAPGDLLLIKRP---EAYLTVGARRIYRV 191
                 7889************************99888...88899999999885 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 1.1e-14
                 XXXEEEEEEEEEEEEEHHHHHHHHTTSEEE--TTGGGCEEEEETTEEEEEEEEEEE.TTEEEEEEEE CS
     FliMN_C   5 dvpveleaelgrtrltlrellnLkvGdvipLdkpadepvevyvngkpiarGelgvv.ggrlavrite 70 
                 ++pv++e++l+  r+tl el + ++G+ +pL ++a++ +++y n k++arGel+ + +g lav+ ++
  EHT97999.1 224 SLPVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALeNGALAVEMNH 290
                 78******************************************************77999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2231.88
//
Query:       EHT98000.1  [L=223]
Description: type III secretion system apparatus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-61  206.8   8.6    3.3e-61  206.5   8.6    1.0  1  FliP      FliP family


Domain annotation for each model (and alignments):
>> FliP  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.5   8.6   1.8e-65   3.3e-61       1     191 []      11     213 ..      11     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 206.5 bits;  conditional E-value: 1.8e-65
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX-HHHHHHHHHHHHHHHHHHHHHH CS
        FliP   1 lltvlslapallimvtsftrivivlsllrnalglqqvppnqvliglallltlfvmaPvleeineeavkpl..leeeiteeealekakeplrefllkqtr 97 
                 ll +++l+p+++   t+f++++ivl ++rnalg+qqvp+++ l+g+al+l++fvm+Pv+++i e + ++   ++++ ++++++e++  ++r++l++ ++
  EHT98000.1  11 LLSFFTLLPFIIAGGTCFIKFSIVLIMVRNALGIQQVPSTLTLNGVALILSAFVMMPVCQRISEYIESNHidFNNSASVTQLMEQGLGSYRDYLVRYSD 109
                 68899*********************************************************9987666512567899999****************** PP

                 HHHHHHHHHCTT-..........-SSGGG....S-HHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        FliP  98 ekdlalflelaek..........eeeeee....vplsvlipafviselkkafeigfllylpFlviDlvvasvlmslGmmmlsPvvislPfKlllfvlvd 182
                 ++ +++f +++++               +     +l +l+pa+++se+++af+i+f+ly+pF+viD+vv+s+l++lGmmm+sPv+is+P+Kl+lfv ++
  EHT98000.1 110 HDLIRFFNKVQQRrsgepvpeveD----HelstLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMMMSPVTISIPIKLILFVSMN 204
                 **********99878777654433....1455699**************************************************************** PP

                 XXXXXXXXX CS
        FliP 183 gwtllvksL 191
                 gw+ll+k+L
  EHT98000.1 205 GWALLTKGL 213
                 *****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1739.45
//
Query:       EHT98001.1  [L=71]
Description: SpaQ family export protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   69.9   8.6    1.4e-19   69.8   8.6    1.1  1  Bac_export_3     Bacterial export proteins, family 3
  ------ inclusion threshold ------
      0.069   12.5   0.8      0.077   12.3   0.8    1.0  1  SLATT_5          SMODS and SLOG-associating 2TM effector doma
      0.087   13.0   0.5       0.15   12.2   0.5    1.3  1  DUF2613          Protein of unknown function (DUF2613)
       0.18   11.1   6.9       0.19   11.0   6.9    1.0  1  Glucos_trans_II  Glucosyl transferase GtrII


Domain annotation for each model (and alignments):
>> Bac_export_3  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   8.6   3.2e-23   1.4e-19      12      73 ..       1      62 [.       1      63 [. 0.98

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 3.2e-23
  Bac_export_3 12 lvlllsaplllvalvvGlvvsifQaaTqIqEqTLsfvpKllavllvllllgpwmletlvdft 73
                  +vl+l+a++++ a+vvG++v++fQ+++qIqEqTL f  K+lav++ +++l +w+ +++++f+
    EHT98001.1  1 MVLKLTAVPIAFATVVGIIVGLFQTIMQIQEQTLPFGLKMLAVFASIFMLIEWFSAEMMNFA 62
                  689**********************************************************8 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   1.7e-05     0.077      37      91 ..      10      65 ..       4      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
     SLATT_5 37 lsllSvylivlslls.nkssestinenlldflsiilSilvlvisllessknykerA 91
                +++++v++i++ l++    ++ +     l++l++++Si++l+  + ++  n+ ++A
  EHT98001.1 10 IAFATVVGIIVGLFQtIMQIQEQTLPFGLKMLAVFASIFMLIEWFSAEMMNFANQA 65
                8999***********87777777778889999999999999988888888888777 PP

>> DUF2613  Protein of unknown function (DUF2613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.3e-05      0.15       2      26 ..       6      27 ..       6      37 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
     DUF2613  2 flgPaaaSaVaGivlGvvavfgvta 26
                +++P a + V+Gi++G+  ++   +
  EHT98001.1  6 TAVPIAFATVVGIIVGLFQTI---M 27
                689*************98887...4 PP

>> Glucos_trans_II  Glucosyl transferase GtrII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.9   4.3e-05      0.19      58     107 ..      10      70 ..       1      70 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
  Glucos_trans_II  58 lllalsailivklfdkkskf...........lsilisalfisfPiflenlsFmfdslvmal 107
                      + +a  + +iv lf+ + +            l++++s+++++  + +e++ F+ ++++ma+
       EHT98001.1  10 IAFATVVGIIVGLFQTIMQIqeqtlpfglkmLAVFASIFMLIEWFSAEMMNFANQAFYMAF 70 
                      667888888888887776667888999***9****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 602.22
//
Query:       EHT98002.1  [L=254]
Description: type III secretion system inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-40  139.4  23.3    1.5e-40  139.2  23.3    1.0  1  Bac_export_1  Bacterial export proteins, family 1


Domain annotation for each model (and alignments):
>> Bac_export_1  Bacterial export proteins, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2  23.3   8.2e-45   1.5e-40       2     215 ..      15     231 ..      14     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 8.2e-45
  Bac_export_1   2 lafllvfaRilallllaPvfgsrsipa.rvrlglalalalllaaaalpalpsvesllllllkEvliGlllGfllrlvfaalqlaGeiidlqmGlsma 97 
                   l+f++v+aR++ +++++P++g+r +++  +++ ++++  + l+++ +++  + + ++++l+kE+++Gl+l+ +l ++f++++  Gei+d+q+G++++
    EHT98002.1  15 LTFVMVYARLAIVFYMLPALGERVLSNlVIKNTIIALTIIGLWPSFATVVMPEQGWFIILIKEFVVGLILAATLCIPFWIVTGLGEILDNQRGATIS 111
                   78************************9566777766666666666667777789999**************************************** PP

  Bac_export_1  98 svfdpasgaqssvlgqflnllalllflaldghllliealveSfelipvgle.gk.laellvellsdlfvlalqlalPvvaalllvnlalGllsRaaP 192
                     +dp +g+qss+l+ +l++++ ++f++++g+l l+e++v+S+e++p g++  +  +e +  ll+ l++  ++la+P++++++ +++ lG+ +R  P
    EHT98002.1 112 DSIDPVNGVQSSILSGLLSFAFGAIFFVSGGMLKLMEVMVQSYEMLPRGSSlDGiRWEHAGVLLQVLMQNSIMLAAPIMLVMMTAEMLLGVFARYCP 208
                   ************************************************9442235667788899********************************* PP

  Bac_export_1 193 qlnvfvvgfplkilvglllllll 215
                   qln f++++ +k +++++++l++
    EHT98002.1 209 QLNPFSLSLTVKSTIAFIVFLFY 231
                   *****************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1867.07
//
Query:       EHT98003.1  [L=365]
Description: type III secretion system peptide export protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-88  295.4   4.3    5.9e-88  295.2   4.3    1.0  1  Bac_export_2  FlhB HrpN YscU SpaS Family
  ------ inclusion threshold ------
        2.4    6.2   5.3        3.3    5.7   5.3    1.2  1  UPF0182       Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.2   4.3   6.6e-92   5.9e-88       2     329 ..       3     336 ..       2     337 .. 0.93

  Alignments for each domain:
  == domain 1  score: 295.2 bits;  conditional E-value: 6.6e-92
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2   2 eKteepTpkklrdarekGqvakskelssalvllaglllllllgpslveelaellrevlsa......lelllelllallllllplllvlllaallanl 92 
                   eKte+pT+kk++d+ +kGq +ksk++ ++++ll+g+ +l+      +  + ++++++l+         +ll+l+  +++l+lp+++v++l++++a+l
    EHT98003.1   3 EKTEQPTSKKRKDSAKKGQTFKSKDVITTVILLVGIYFLAH--AVSFGPFISFYTHLLQYttrpgmGVFLLDLARIFFTLALPFIAVCTLVGFAATL 97 
                   9*********************************9886643..3344455555555555555569766779999*********************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  93 lqvgflfstkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeldleaalelllslllkllllvllallvial 189
                   lq+gf+++t+a+k++++ lnp++g+k+ifs+r++ el+ksl+ +v+++a++  +++++l++ l+l+++d+  ++++++ l+lk+++++++  +++ l
    EHT98003.1  98 LQTGFTLATEAIKLNFKALNPVEGVKKIFSMRTVKELVKSLCYLVVFAATCHSLIQQDLRQALTLYRADMPGLVAVWVALALKAVMVFIAWSIFVLL 194
                   ************************************************************************************************* PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHT-SEEEEETTTEEEEEEEETTTESSEEEEEEEEHHHHHHHHH CS
  Bac_export_2 190 lDlllqrwefekklkMtkqEvKdEyKesEGdpeiKsrirqlqrelarrrmmaevpkAdvvitNPthyAVALkYdpekmeaPvvvakGadelAlkire 286
                   +Dll++++ + k++kM+k+EvK+E+Kes+G+p+iKs +r+ +++l++ + ma+v++++vv++NPth+A A++++pe ++ P++  ++++  A +  +
    EHT98003.1 195 ADLLVEYFLHFKDMKMDKHEVKQEHKESDGNPQIKSARRRTHQDLLSGEEMAAVRNSEVVLANPTHIAMAVYFNPEVASLPFIALRCTNLKAKAAIA 291
                   ************************************************************************************************* PP

                   HHHHHT--EEE-HHHHHHHHHH--TTSB--GGGH..HHHHHHHHH CS
  Bac_export_2 287 iAeengvpivenppLAraLyatvevgqeIpeely..eaVaeiLay 329
                   +Ae+ gvp+v+n pL r+Ly+t    ++I+ e y    V+++L +
    EHT98003.1 292 YAEKIGVPVVRNIPLTRRLYHTYSQYSFISLEDYvlMDVMDVLIW 336
                   *****************************9998833467777766 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.3   0.00036       3.3     109     247 ..      50     194 ..       4     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00036
     UPF0182 109 wekvllflnstsfgvkDpifgkDis..FYvFklPflelllslllalvllaliavllvyllsgeslgirl...kfaelskaarrhlsvllallllllals 202
                 + ++ + l + ++     +f  D++  F+++ lPf+ + + + +a++ll + ++l++  ++ ++ +++     ++ +s ++ ++l   l+ l+++ a  
  EHT98003.1  50 FISFYTHLLQYTTRPGMGVFLLDLAriFFTLALPFIAVCTLVGFAATLLQTGFTLATEAIKLNFKALNPvegVKKIFSMRTVKELVKSLCYLVVFAATC 148
                 333333333333333444677777655999999******************999999999998885544777557788889999999999999999999 PP

     UPF0182 203 ywLdryellys.krgvvtGagYtdvnavlpaktilavialvvavll 247
                 + L + +l  + +   +   g + v + l +k ++++ia  + vll
  EHT98003.1 149 HSLIQQDLRQAlTLYRADMPGLVAVWVALALKAVMVFIAWSIFVLL 194
                 9998888887742224555566777777777777777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2875.25
//
Query:       EHT98004.1  [L=184]
Description: type III secretion system chaperone protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-18   65.0  14.4    4.7e-09   36.1   3.1    2.6  2  TPR_3     Tetratricopeptide repeat
    1.7e-06   27.7   8.7       0.02   15.0   1.5    3.4  3  TPR_2     Tetratricopeptide repeat
    3.7e-05   23.9   4.8     0.0089   16.3   1.6    3.2  3  TPR_12    Tetratricopeptide repeat
     0.0017   18.9   4.7     0.0027   18.3   2.1    2.3  2  TPR_16    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.036   12.8   0.0      0.052   12.3   0.0    1.3  1  PknG_TPR  Protein kinase G tetratricopeptide repeat
      0.036   13.9  11.6      0.052   13.4   1.9    3.3  3  TPR_1     Tetratricopeptide repeat
      0.039   14.6  11.0       0.18   12.5   0.2    4.0  4  TPR_6     Tetratricopeptide repeat
      0.043   14.0   0.8      0.073   13.2   0.8    1.4  1  TPR_9     Tetratricopeptide repeat
      0.072   13.3  10.2       0.13   12.5   4.9    2.8  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
        1.1    9.2   3.9         22    5.1   0.2    2.8  3  TPR_10    Tetratricopeptide repeat
        2.1    8.7   7.1       0.26   11.6   1.4    2.5  3  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   3.1   2.9e-12   4.7e-09       3      36 .]      52      83 ..      50      83 .. 0.96
   2 !   34.1   3.6   1.2e-11   1.9e-08       1      36 []      84     117 ..      84     117 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.9e-12
                HHHHHHHHHHHTT-HHHHHHH..HHHHHHH-TT- CS
       TPR_3  3 ylysyAaefynkkkyqeArelfsYallaildken 36
                + y++A++fy ++k+++A+ l  +++l+i+d++n
  EHT98004.1 52 DVYKLAYDFYHQGKLNDAESL--FRFLCIYDFYN 83
                78*******************..99********9 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.2e-11
                 HHHHHHHHHHHHHTT-HHHHHHH..HHHHHHH-TT- CS
       TPR_3   1 ldylysyAaefynkkkyqeArelfsYallaildken 36 
                 ++y +++Aa++++kk+y +A+++  Yal++ l ke+
  EHT98004.1  84 PEYAMGLAAVYQLKKNYAKAIDF--YALAYSLSKED 117
                 5899*******************..*******9998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.3    0.0027       4.4       5      25 ..      54      74 ..      53      74 .. 0.93
   2 !   15.0   1.5   1.2e-05      0.02       2      33 ..      85     116 ..      84     117 .. 0.89
   3 !    8.1   0.0     0.002       3.3       4      25 ..     121     142 ..     119     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
       TPR_2  5 ynlGlayyklgdyeeAleafe 25
                y l++  y++g++++A+ +f+
  EHT98004.1 54 YKLAYDFYHQGKLNDAESLFR 74
                88***************9986 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e+ + l+ +y  +++y++A++++  A +l  +
  EHT98004.1  85 EYAMGLAAVYQLKKNYAKAIDFYALAYSLSKE 116
                 67789*********************999876 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.002
       TPR_2   4 lynlGlayyklgdyeeAleafe 25 
                  ++ Gl+ + + + ++A+++fe
  EHT98004.1 121 MFYAGLCNLMQRQAAQARKCFE 142
                 5899*****************8 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.029        48       6      26 ..      54      73 ..      49      75 .. 0.70
   2 !   16.3   1.6   5.4e-06    0.0089       8      75 ..      89     148 ..      85     150 .. 0.79
   3 ?    5.0   0.1     0.019        31      10      34 ..     125     150 ..     121     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.029
      TPR_12  6 lnnlaavlrrlgrydeAlell 26
                + +la   +++g++ +A++l+
  EHT98004.1 54 Y-KLAYDFYHQGKLNDAESLF 73
                4.6777777777777777776 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5.4e-06
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  laav++  ++y++A++++  a+ + +    +d+    + ++  g + +++ + ++A++ +e +++++
  EHT98004.1  89 GLAAVYQLKKNYAKAIDFYALAYSLSK----EDY----RPMFYAGLCNLMQRQAAQARKCFEIVMDRC 148
                 79*********************9993....444....577888888888888888888877666655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.019
      TPR_12  10 aavlrrlgrydeAlellekaleia.r 34 
                 +++ + + + ++A++++e +++++  
  EHT98004.1 125 GLCNLMQRQAAQARKCFEIVMDRCrD 150
                 56667788899999999999999944 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.1   1.7e-06    0.0027       1      61 [.      54     111 ..      54     117 .. 0.89
   2 ?    0.4   0.0      0.65   1.1e+03      10      23 ..     131     144 ..     122     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 ++la++++ +g+  dA+ +++ +  +d     ++e +++l+ ++  ++++a+A+++y+ a+
  EHT98004.1  54 YKLAYDFYHQGKLNDAESLFRFLCIYDFY---NPEYAMGLAAVYQLKKNYAKAIDFYALAY 111
                 89******************888888843...667***********************998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.65
      TPR_16  10 agdyddAaaaleaa 23 
                 +++ ++A++ +e++
  EHT98004.1 131 QRQAAQARKCFEIV 144
                 67788999998876 PP

>> PknG_TPR  Protein kinase G tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05     0.052     124     156 ..     114     146 ..      91     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
                 H---HHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
    PknG_TPR 124 veedWrldWyrglaeLlegdyeeAaaeFdevla 156
                 ++ed+r ++y+gl++L++ + ++A+++F+ v++
  EHT98004.1 114 SKEDYRPMFYAGLCNLMQRQAAQARKCFEIVMD 146
                 6799*************************9986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4     0.021        34       5      24 ..      54      73 ..      54      74 .. 0.87
   2 ?   13.4   1.9   3.2e-05     0.052       6      25 ..      89     108 ..      85     117 .. 0.87
   3 ?    0.8   0.1      0.31     5e+02       8      25 ..     125     142 ..     122     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.021
                HHHHHHHHHTT-HHHHHHHH CS
       TPR_1  5 ynlGnayfklgkydeAleyy 24
                y l++ ++++gk+++A+  +
  EHT98004.1 54 YKLAYDFYHQGKLNDAESLF 73
                679999**********9776 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHTT-HHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyye 25 
                 +l+++y+ +++y +A+++y 
  EHT98004.1  89 GLAAVYQLKKNYAKAIDFYA 108
                 79****************96 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.31
                 HHHHHHTT-HHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyye 25 
                 G++ + + +  +A +++e
  EHT98004.1 125 GLCNLMQRQAAQARKCFE 142
                 78889999999*****97 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.14   2.3e+02       4      24 ..      54      74 ..      53      76 .. 0.90
   2 ?    3.5   0.8     0.084   1.4e+02       6      23 ..      90     107 ..      86     112 .. 0.79
   3 ?   12.5   0.2   0.00011      0.18       3      28 ..     121     146 ..     121     149 .. 0.92
   4 ?   -0.4   0.0       1.4   2.3e+03      17      32 ..     158     173 ..     155     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  4 yklalsyrklgdtdkAleale 24
                ykla+ ++ +g+  +A  +++
  EHT98004.1 54 YKLAYDFYHQGKLNDAESLFR 74
                9********99**99988886 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.084
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleal 23 
                 la  y+  ++++kA++ +
  EHT98004.1  90 LAAVYQLKKNYAKAIDFY 107
                 677777768******988 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 +++++l+ +++ ++++A++ +e + +
  EHT98004.1 121 MFYAGLCNLMQRQAAQARKCFEIVMD 146
                 89********99*********98876 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHH-TT CS
       TPR_6  17 dkAlealerlikeYPd 32 
                 ++ l a+++l ++ P+
  EHT98004.1 158 AAYLSAMNKLKRDQPN 173
                 5567789999998887 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   4.5e-05     0.073       1      70 [.      90     159 ..      90     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.5e-05
       TPR_9   1 lkaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeaira 70 
                 l a+++ ++++++a+  + +   l  +d +  +  Gl++  + + ++A++++e  ++ + d+  +e+ +a
  EHT98004.1  90 LAAVYQLKKNYAKAIDFYALAYSLSKEDYRPMFYAGLCNLMQRQAAQARKCFEIVMDRCRDPLLIERTAA 159
                 56889999****************************************************9888888766 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0031       5.1      18      46 ..      45      73 ..      21      76 .. 0.74
   2 ?   12.5   4.9   7.8e-05      0.13       2      79 ..      63     141 ..      62     144 .. 0.82
   3 ?   -2.3   0.0       3.4   5.6e+03      37      49 ..     158     170 ..     152     179 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0031
                HHH--HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3 18 aetespedayllAlclylngqykrAyell 46
                 +++  +d+y lA+ +y++g+ + A  l+
  EHT98004.1 45 VSSDTMQDVYKLAYDFYHQGKLNDAESLF 73
                56777889***************998876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.8e-05
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 q+++++A+ l+  l+ ++ ++pe a+ lA ++ l ++y +A++++  a  l +++ +  + ++ c l + +  +A++++
  EHT98004.1  63 QGKLNDAESLFRFLCIYDFYNPEYAMGLAAVYQLKKNYAKAIDFYALAySLSKEDYRPMFYAGLCNLMQRQAAQARKCF 141
                 7889999999999999****************************99885555555555555557777777777777776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.4
                 T-HHHHHHHHHCT CS
      ANAPC3  37 gqykrAyellrka 49 
                   y +A++ l++ 
  EHT98004.1 158 AAYLSAMNKLKRD 170
                 4577777777776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.021        34       8      26 ..      56      74 ..      55      74 .. 0.88
   2 ?    5.1   0.2     0.013        22       8      33 ..      90     115 ..      87     116 .. 0.90
   3 ?   -3.6   0.1       7.1   1.2e+04      25      33 ..     131     139 ..     130     142 .. 0.52

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.021
      TPR_10  8 LanalrqrgrydeAealle 26
                La   +++g++++Ae l++
  EHT98004.1 56 LAYDFYHQGKLNDAESLFR 74
                788889*********9986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.013
      TPR_10   8 LanalrqrgrydeAealleealairr 33 
                 La++++  ++y++A +++  a+++ +
  EHT98004.1  90 LAAVYQLKKNYAKAIDFYALAYSLSK 115
                 9*****************99998876 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 7.1
      TPR_10  25 leealairr 33 
                 +++a ++r+
  EHT98004.1 131 QRQAAQARK 139
                 455555443 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.3   3.7e+03       1      11 [.      69      79 ..      54      81 .. 0.66
   2 ?   11.6   1.4   0.00016      0.26       6      33 ..      89     116 ..      84     117 .. 0.89
   3 ?   -2.3   0.0       4.5   7.3e+03      17      25 ..     134     142 ..     131     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
                CCHHHHHHHHH CS
       TPR_8  1 aeayynlgsiy 11
                ae++++  +iy
  EHT98004.1 69 AESLFRFLCIY 79
                45556666665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                  l+ +y+ +++y +A+ +y  a +l+++
  EHT98004.1  89 GLAAVYQLKKNYAKAIDFYALAYSLSKE 116
                 58889********************987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.5
                 HHHHHHHHH CS
       TPR_8  17 yeeAkeyye 25 
                   +A +++e
  EHT98004.1 134 AAQARKCFE 142
                 567888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1483.14
//
Query:       EHT98005.1  [L=672]
Description: SipB family cell invasion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-47  160.8  61.9      6e-47  160.8  61.9    3.2  2  SseC            Secretion system effector C (SseC) like famil
    1.1e-09   39.0  21.5    1.1e-09   39.0  21.5    5.4  5  T3SSipB         Type III cell invasion protein SipB
  ------ inclusion threshold ------
       0.08   11.7   3.1      0.065   12.0   1.0    1.9  2  DUF2207         Predicted membrane protein (DUF2207)
      0.094   13.2   0.3      0.094   13.2   0.3    4.5  6  Goodbye         fungal STAND N-terminal Goodbye domain
          4    7.3   7.2          1    9.1   1.5    2.8  3  DUF4897         Domain of unknown function (DUF4897)


Domain annotation for each model (and alignments):
>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7  15.6      0.95   3.4e+03     155     311 ..     100     273 ..      88     279 .. 0.69
   2 !  160.8  61.9   1.7e-50     6e-47       1     315 [.     302     664 ..     302     666 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.95
        SseC 155 aakgaaaavksg......aaklaeavaeaigkaikkaaekagkevaeqvskq......vlnelakkatkva..........kavkegv.vasavakali 230
                 aa        sg      a++l+e + + ++ ++    ek++++++ ++ ++      ++ e+a+  ++ +          kav++++   s  + a++
  EHT98005.1 100 AA--------SGgsqrssATELTELLGKITQLMANTSLEKMLSQLN-SFNAMmsgatsAWSEMAAMLEQQGiqwasdsdalKAVQQQAdGLSSGVDAAQ 189
                 22........223445569999999999999999999999999988.5666635555544444444444447777777777777777776677788888 PP

        SseC 231 kavvvaeggngiaqGainiqr...AklqkkaaqlqAdtkllravleqlqkvldeaaeeikellesiqellksmsqaisqkgdtl 311
                 ka+v+a++  ++ ++ +  q     +lqkk++  q  ++ ++ +l+    +    +e++ +  ++ ++  +++++a ++k+++l
  EHT98005.1 190 KALVSAQAELDALKNQAAGQDlvpDDLQKKIDRTQTAVTSAQLALTTATGLYNGFVEKTLNPAKTAKSNSHMALEATQSKSQAL 273
                 888887777777655444333111568888888888888888888888888888888888888888888888888888777765 PP

  == domain 2  score: 160.8 bits;  conditional E-value: 1.7e-50
        SseC   1 LlaklreLtskaaedsleskqkllkelqekqeklrqeqveeireqikkaeekakkaGiigkIfGwilaivsvvagalkvgaslllaavgvAgglmdaal 99 
                 L+a +++L+ k+++d l+++++l ++l+e++ k+++++++e++e+++kaee++k++G+igk++Gw++++vs+va+a+++gasl+laavg+A       l
  EHT98005.1 302 LMALMSQLIAKSSSDDLQATAELKQKLAEASAKDAEKKAKEYEEEVRKAEEMQKTMGCIGKVLGWLITAVSFVAAAFTGGASLALAAVGLA-------L 393
                 89*****************************************************************************************.......* PP

        SseC 100 giadevvaaattkslideemqpimdvv.......................dkaqlageivgavvaavavvaavvavgsa.akgaaaavksg....aakl 170
                 +i de+ +a+t++s++  +m+p+md++                        +a+++g+i+ga+ aa ++va++v++gsa +k  + a++++    ++++
  EHT98005.1 394 AIGDEINQAITGNSFMADAMKPLMDAIvkplmelmgkmfagiieamgvdkETAEMVGKILGAIAAAAVLVAGMVVAGSAlSKVFGVAMNKIglevGEEA 492
                 ****************************************************************99999999988887625666778888877775555 PP

        SseC 171 aeavaeaigkai.kkaaekagkevaeqvskqvlnelakkatkva.................kavkegv..............vasavakalikavvvae 237
                 ++++ + +++ + k++ ++++k+ +  ++k+v++e+ak++t+ a                 k                    ++  + ++++ av++a+
  EHT98005.1 493 SKTMGKSVAAEVqKEVTQDLAKTTMRTAAKEVAEEVAKEVTEQAtkttmqrlmdsafaqafK-----RvfqgfgrtagmdevKMGTIYNRTQMAVTSAA 586
                 55544444433323344444444444444444444444444444222255555555555552.....044444666667666888899*********** PP

        SseC 238 ggngiaqGainiqrAklqkkaaqlqAdtkllravleqlqkvldeaaeeikellesiqellksmsqaisqkgdtlqqia 315
                 ++n+  q a+ i +A+   +a++ +A   +  a  e l++++ +a++++++ +e+ ++++k++s     + ++ + i+
  EHT98005.1 587 VVNTSIQVAGSIVVADMMVEASKTKAQMMKDAALQELLNEMINRAIDTFSHRMETVNQIVKNISVVADTQLQAGRYIT 664
                 ***************************************************************988777777766666 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.5      0.36   1.3e+03      59      97 ..      22      60 ..       8     100 .. 0.75
   2 !   39.0  21.5   2.9e-13   1.1e-09       2     137 ..     111     230 ..     110     275 .. 0.80
   3 ?   -5.2  12.8         5   1.8e+04      35      89 ..     286     346 ..     259     357 .. 0.60
   4 ?   -7.3   9.7         5   1.8e+04      36      82 ..     492     539 ..     469     621 .. 0.68
   5 ?   -1.1   0.2      0.65   2.3e+03      32      67 ..     603     640 ..     579     667 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.36
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----- CS
     T3SSipB 59 tddleaaiekadqaksaadaatkkvdeaqkrlkeLaPde 97
                +d+l+++ e+a  ++ +  + ++++  ++  +++L+P++
  EHT98005.1 22 KDELKKQSEQARRLGNDGYKNHAQAGSVKSAVQSLQPEQ 60
                677888888888888888888888888888888885543 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 2.9e-13
                 XCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------- CS
     T3SSipB   2 skLTlllGnlikllgnkSLsqLenrlaawkamskaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePek 100
                  +LT+llG++ +l++n SL+++ ++l+ ++am+ ++  a s++   l++   +++   d+l+a +++ad + s +daa+k++  aq+ l+ L       
  EHT98005.1 111 TELTELLGKITQLMANTSLEKMLSQLNSFNAMMSGATSAWSEMAAMLEQQGIQWASDSDALKAVQQQADGLSSGVDAAQKALVSAQAELDAL------- 202
                 68*************************************************************************************99999....... PP

                 -CHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHH CS
     T3SSipB 101 akleaaeqQagaaadalqadealqKkldaasklseka 137
                       ++Qa+     l+ d  lqKk+d ++ + + a
  EHT98005.1 203 ------KNQAA--GQDLVPDD-LQKKIDRTQTAVTSA 230
                 ......23333..22233333.444444444444444 PP

  == domain 3  score: -5.2 bits;  conditional E-value: 5
                 HHTTTTT----STHHHHH...HH..HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
     T3SSipB  35 kaqqeaasklSdelqtal...se..akgatddleaaie.kadqaksaadaatkkvdeaqkr 89 
                 + q++++  lS+ l+ ++   s+  ak   ddl+a +e k + a++ a++a+kk++e  + 
  EHT98005.1 286 EFQRKHNDDLSKSLNFLMalmSQliAKSSSDDLQATAElKQKLAEASAKDAEKKAKEYEEE 346
                 4455666667776664331113333456667777655535666788888888888776554 PP

  == domain 4  score: -7.3 bits;  conditional E-value: 5
                 HTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS
     T3SSipB  36 aqqeaasklSdelqtalseakgatddleaaiekadq.aksaadaatkk 82 
                 a +++++ +  e+q+ + +  + t   +aa e a++ ak + ++atk 
  EHT98005.1 492 ASKTMGKSVAAEVQKEVTQDLAKTTMRTAAKEVAEEvAKEVTEQATKT 539
                 455555555555554444444433333333333322133344444433 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.65
                 HHHHHTTTTT----S.THHHHHHHH.HHHHHHHHHHHH CS
     T3SSipB  32 amskaqqeaasklSd.elqtalsea.kgatddleaaie 67 
                  m +a +++a+ + d +lq++l+e+ + a d + + +e
  EHT98005.1 603 MMVEASKTKAQMMKDaALQELLNEMiNRAIDTFSHRME 640
                 46666666666666523666666541333444444444 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.33   1.2e+03     335     367 ..     191     236 ..     165     258 .. 0.69
   2 ?   12.0   1.0   1.8e-05     0.065     304     409 ..     284     395 ..     257     490 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.33
     DUF2207 335 s.......lkeikkyakkskkkakkfkkalkkwksavkk......k 367
                         l+++k +a  ++  ++ ++k++++ + av++      +
  EHT98005.1 191 AlvsaqaeLDALKNQAAGQDLVPDDLQKKIDRTQTAVTSaqlaltT 236
                 1334445578888888888889999999999999999995555541 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF2207 304 tltilkkndeeldpyEkalldlLfdkseegks..lkeikkyakkskkkakkfkkalkkwksavkk.......kergyfdkkgkkklkklsalglgliil 393
                  +++ +k++++l+++ + l+ l+   ++   +  +++++ +a++++k           +++a  k       ++++  +k+ ++ +k+++ +g +l++l
  EHT98005.1 284 AVEFQRKHNDDLSKSLNFLMALMSQLIA---KssSDDLQATAELKQK-----------LAEASAKdaekkakEYEEEVRKA-EEMQKTMGCIGKVLGWL 367
                 3356666777777777777766662222...1223444444444333...........33333333331221133333334.44445566666666666 PP

     DUF2207 394 glilillallllvll............l 409
                 +++++++a+++ +++            +
  EHT98005.1 368 ITAVSFVAAAFTGGAslalaavglalaI 395
                 6666666555544433333333333330 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   8.7e+03      22      35 ..     124     137 ..     108     157 .. 0.53
   2 ?    0.1   0.1      0.29     1e+03      18      47 ..     204     233 ..     184     275 .. 0.62
   3 ?   -0.3   0.1      0.38   1.4e+03      23      61 ..     266     305 ..     248     316 .. 0.63
   4 ?   13.2   0.3   2.6e-05     0.094      18     100 ..     312     402 ..     298     420 .. 0.72
   5 ?   -0.4   0.4      0.42   1.5e+03       9      57 ..     505     555 ..     498     566 .. 0.52
   6 ?   -2.3   0.1       1.6   5.9e+03      49      64 ..     633     648 ..     606     660 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
     Goodbye  22 kelssvedllkqie 35 
                  + +s+e++l+q++
  EHT98005.1 124 MANTSLEKMLSQLN 137
                 33333333333333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.29
     Goodbye  18 dealkelssvedllkqieaekdkfeefrek 47 
                 ++a  +   ++dl+k+i++ + + ++ +  
  EHT98005.1 204 NQAAGQDLVPDDLQKKIDRTQTAVTSAQLA 233
                 444555556778888888777766655533 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.38
     Goodbye  23 elssvedllkqieaekdkfeefrekkek.lkealkkilsp 61 
                 + s+ ++l++ +  ++++  ef++k++  l ++l+  +++
  EHT98005.1 266 TQSKSQALVNTLTPQQQSAVEFQRKHNDdLSKSLNFLMAL 305
                 4456778999999999988888866654044444444443 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 2.6e-05
     Goodbye  18 dealkelssvedllkqieaekdkfeefr....ekkeklkealkkilspiqllggiaaqgasma...Fg.PaslcfnAvsyLikaakkvsei 100
                 +++ ++l+ + +l +++ ++++k+ e++    e++ +  e ++k++ +i ++ g + +++s +   F   asl ++Av + + ++++++++
  EHT98005.1 312 KSSSDDLQATAELKQKLAEASAKDAEKKakeyEEEVRKAEEMQKTMGCIGKVLGWLITAVSFVaaaFTgGASLALAAVGLALAIGDEINQA 402
                 5566677777788888877777666666554544555667799999999776666555665543447635********9999999998876 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.42
     Goodbye   9 ekeTgkdlkdealkels..svedllkqieaekdkfeefrekkeklkealkk 57 
                 +ke  +dl+++++++++    e++ k++ +++ k++ +r   + + +a+k+
  EHT98005.1 505 QKEVTQDLAKTTMRTAAkeVAEEVAKEVTEQATKTTMQRLMDSAFAQAFKR 555
                 566666663333333221145677777777777666555444444444444 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 1.6
     Goodbye  49 eklkealkkilspiql 64 
                 +++ + ++++ + +++
  EHT98005.1 633 DTFSHRMETVNQIVKN 648
                 2222222222222333 PP

>> DUF4897  Domain of unknown function (DUF4897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.3   4.5e+03      36      67 ..     272     306 ..     250     337 .. 0.61
   2 ?   -0.5   0.1      0.26   9.5e+02      14      69 ..     316     373 ..     306     384 .. 0.72
   3 ?    9.1   1.5   0.00029         1      28     103 ..     528     603 ..     500     622 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
     DUF4897  36 eyieqYqkasee..tfe.kylsqlseevgreikvv 67 
                  ++++ + ++++  +f+ k+ ++ls++++  + ++
  EHT98005.1 272 ALVNTLTPQQQSavEFQrKHNDDLSKSLNFLMALM 306
                 44444443333334554245566666666555554 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.26
     DUF4897  14 ysgsavlttkaelkfkdekkeeeyieqYqkasee..tfekylsqlseevgreikvvsl 69 
                 ++ +a+ + k +l   + k+ e+  ++Y++  ++  + +k +  + + +g  i  vs+
  EHT98005.1 316 DDLQATAELKQKLAEASAKDAEKKAKEYEEEVRKaeEMQKTMGCIGKVLGWLITAVSF 373
                 5666777777777777777777777777765443348999998888888888877776 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00029
     DUF4897  28 fkdekkeeeyieqYqkaseetfekylsqlseevgreikvvslessateregileveEkavlkglvkvengvvetsl 103
                   +e  e+  + + q+   ++f + ++++ + +gr+  + ++++    +   + v+  av++  ++v   +v  ++
  EHT98005.1 528 VAKEVTEQATKTTMQRLMDSAFAQAFKRVFQGFGRTAGMDEVKMGTIYNRTQMAVTSAAVVNTSIQVAGSIVVADM 603
                 23444456667778888888************************99999999*****************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3321  (0.185231); expected 358.6 (0.02)
Passed bias filter:                      862  (0.0480785); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.43
# Mc/sec: 4663.06
//
Query:       EHT98006.1  [L=410]
Description: hypothetical protein CKS_4520 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.017   15.5   1.4        8.4    6.9   0.2    2.9  2  YCII            YCII-related domain
        4.8    7.9   7.4       0.69   10.6   0.7    2.8  3  Organ_specific  Organ specific protein


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0013        12      44      83 ..      33      72 ..       9      79 .. 0.83
   2 ?    6.9   0.2   0.00093       8.4      14      83 ..     299     367 ..     290     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0013
                ECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHT CS
        YCII 44 lvidGpfaetkeqlgGfyiveaadldeaieiaardPfvea 83
                l + +++a +k++l +++ ++ a +dea++ a + ++  +
  EHT98006.1 33 LQAVSEWASEKGMLSSVMDMQSARRDEAQAAAVAQRNGGN 72
                556689************************9988877665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00093
                 H.HHHHHHHHHHHHHHHHHHHTTGEEEE...EEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHT CS
        YCII  14 l.eeraallaahlayleelkkeGvllaa...GpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfvea 83 
                 + ee+ +  ++hl+ +e +++ +++ ++   G +l+ +     t++++ G y v aa ++   ++a++d + ++
  EHT98006.1 299 QgEEQLSASQKHLKHNEVQNNTQKVRVVtelGNQLANT-----TRNITEGAYNVNAAEMQGKADLARADGNQNS 367
                 24788889999999999999999999998889999988.....9999**************9999999987665 PP

>> Organ_specific  Organ specific protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.14   1.2e+03      13      47 ..      96     135 ..      91     189 .. 0.54
   2 ?   -3.3   0.0       1.6   1.4e+04      58      74 ..     253     269 ..     238     273 .. 0.49
   3 ?   10.6   0.7   7.6e-05      0.69       8      50 ..     279     322 ..     276     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.14
  Organ_specific  13 dqpmPkaikglls....ktk.eqvlsskkancettlvtea 47 
                      + m  a+ +++      t+ ++ ++++k  ++t+ +t +
      EHT98006.1  96 SERMASAMPSVMAaqtnITQpNNKAAESKSAVDTSGNTTT 135
                     5555555555555222233313344455555555533222 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
  Organ_specific  58 kpsvtvyddediklkee 74 
                     k++v+v +++++  +++
      EHT98006.1 253 KNNVAVAKNQEFGITQQ 269
                     23333444444444443 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 7.6e-05
  Organ_specific   8 kavmkdqpmPkaikgllsktk.eqvlsskkancettlvteaknk 50 
                     ++vmk q m  ++k+ +skt+ e+ ls+++++ ++ +v++  +k
      EHT98006.1 279 NMVMKGQRMDGKVKETMSKTQgEEQLSASQKHLKHNEVQNNTQK 322
                     69****************99854566666666666655554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2054  (0.114563); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2932.24
//
Query:       EHT98007.1  [L=382]
Description: IpaD family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-25   88.4  15.1    2.4e-13   50.2   0.7    2.3  2  T3SS_TC          Type III secretion systems tip complex compo
  ------ inclusion threshold ------
       0.27   11.8   2.0       0.51   10.9   0.4    2.0  2  YABBY            YABBY protein
       0.35   10.6   5.7       0.48   10.2   4.1    1.9  2  Kinase-PPPase    Kinase/pyrophosphorylase
        1.4    9.3   6.1        4.7    7.6   5.9    2.0  1  Fez1             Fez1
        1.6    8.7   5.8        1.8    8.5   1.5    2.3  2  Translin         Translin family
        3.6    8.2   7.9         20    5.7   0.1    3.5  4  Carbpep_Y_N      Carboxypeptidase Y pro-peptide


Domain annotation for each model (and alignments):
>> T3SS_TC  Type III secretion systems tip complex components
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   7.7   1.4e-14     4e-11      47     214 ..      83     255 ..      23     278 .. 0.76
   2 !   50.2   0.7     8e-17   2.4e-13     298     354 ..     321     377 ..     311     378 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 1.4e-14
                 HHHHHHHHHHHHHHHHHHHSS-.....S-------SSSTTTCCHHHHHHH..HHHHHHHHHHHHHCTT----HHHHHHHHHHCSS-CCCCTTSHHHHHH CS
     T3SS_TC  47 lrqtateirlaaqalkkdlsqk.....eltkarleapqisldenkdaqtl..aarllessldalaksgvalsaeqkealrsalsaPeeaelagapmaaa 138
                 + +++ +i  a+ ++ + l+++     + t a+++++q + +++k a  l   +  le +    ++s+  l+a  + +l+  +   eeae + +   + 
  EHT98007.1  83 VGNALADIEAANDKVGA-LARDnktstTATVAKMNSAQYE-QVDKTAAALetIKDELEPNRIKASRSENQLKATMQTLLH-EIAEAEEAEKDRTGDNEI 178
                 45677777777776655.3333000003344445566665.444444433114567888888899**************9.666678999998888899 PP

                 HT---HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH.GGGEEE-SSTTEEEE-HHHHHHHHHHH CS
     T3SS_TC 139 rqtisdaelWdkisksiskikdsylgvyenvvasytdfykafsdilskl.agWikPGgdGnkvkldvdslkaelekl 214
                     s ++lW  +++ i++i+ +y++ y   + +yt++y+a+ + + k  a+ +k G+dGn+v ++ +++k   +k+
  EHT98007.1 179 SVHTSYSKLWAVMAEAIKNIRTNYVDFYAGLMQKYTKMYEAYNEYVQKAsADAVKAGEDGNNVDFNNNTVKGGYDKF 255
                 9999***************************************9877652899****************99887775 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 8e-17
                 CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     T3SS_TC 298 nakyqaWqsGfkaqeenlkntlqtltqkysnanslfdnlvkvlsstisscletaksf 354
                  + yqaW + f+a    l++++q ++q+y+ ans fdnl kvls +iss  + ak  
  EHT98007.1 321 TSSYQAWLASFNAIGTGLQSNMQSFAQRYTQANSTFDNLNKVLSGAISSMADSAKDV 377
                 678***************************************************976 PP

>> YABBY  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00017      0.51      18     135 ..      15     145 ..      13     152 .. 0.52
   2 ?    0.2   0.5      0.33   9.8e+02      75      77 ..     161     163 ..     115     237 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
       YABBY  18 lavsvPcsslfkivtvrCGhCtnllsvnlralllapaaaelqslkkqlel............ksellskelassskssekskksalasssse....... 97 
                 l v+ P+ s +++v v  G  ++l +v l++l+ a ++++  ++ ++  +            + + l+++++++   +e ++         +       
  EHT98007.1  15 LSVETPMISASQVVEVGVGSTSELNTVLLKQLISALTSTDSDNQLED--VrnvlkrhglntsDADFLKSKVGNALADIEAAND--------Kvgalard 103
                 78999**************************9997544442322222..2234554555444222222222222222222222........02222221 PP

       YABBY  98 qeeeeee...kvvnrppekrqRvPsaYnrFikeei..qRikae 135
                 +++++++   k+ +   e+ +++ +a    ik+e+  +Rika+
  EHT98007.1 104 NKTSTTAtvaKMNSAQYEQVDKTAAAL-ETIKDELepNRIKAS 145
                 222222222133333335555555554.457887733478876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.33
       YABBY  75 ela 77 
                 e+a
  EHT98007.1 161 EIA 163
                 111 PP

>> Kinase-PPPase  Kinase/pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.1   0.00016      0.48       6     121 ..     103     221 ..     100     231 .. 0.87
   2 ?   -1.0   0.0       0.4   1.2e+03       4      42 ..     312     352 ..     310     373 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00016
  Kinase-PPPase   6 dstGetaeavaraalaqFeevevelevlpfvkteekleevleeakeee.aivvyTlvde..elrealeeaaeekgveavdllgpllealeeelgvk 98 
                    d+   t ++va+   aq+e+v+ +   l+ +k+e + +++ ++ +e++    + Tl++e  e +ea ++++ ++++ +    ++l + ++e++++ 
     EHT98007.1 103 DNKTSTTATVAKMNSAQYEQVDKTAAALETIKDELEPNRIKASRSENQlKATMQTLLHEiaEAEEAEKDRTGDNEISVHTSYSKLWAVMAEAIKNI 198
                    667789999*******************************9999554448889999876335667777888899********************** PP

  Kinase-PPPase  99 pkeepgllhkldedYfkrieAie 121
                     ++ +  +  l ++Y+k+ eA +
     EHT98007.1 199 RTNYVDFYAGLMQKYTKMYEAYN 221
                    *****************999965 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.4
  Kinase-PPPase   4 vSdstGetaeavaraalaqF........eevevelevlpfvkteekl 42 
                     Sd+ G+  ++  +a la+F        +      ++ +f ++ +++
     EHT98007.1 312 PSDGGGKVSTSSYQAWLASFnaigtglqS------NMQSFAQRYTQA 352
                    59999999999999999999444333221......333333333333 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.9    0.0016       4.7      63     157 ..      54     150 ..      43     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
        Fez1  63 ektlelevcenelqrk...kseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqass 157
                 + +++le + n l+r+   +s+a+ l+ kv+++ ++++   +++ +l+++ ++++++++ ak++ ++ e++++  + +e ++ eL+ +r k  + +++
  EHT98007.1  54 DSDNQLEDVRNVLKRHglnTSDADFLKSKVGNALADIEAANDKVGALARD-NKTSTTATVAKMNSAQYEQVDKTAAALETIKDELEPNRIKASRSENQ 150
                 55678999999999998888999*******************99997765.55567788889999999999999999999999999888776665554 PP

>> Translin  Translin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2     0.071   2.1e+02       5      63 ..      82     137 ..      79     141 .. 0.52
   2 ?    8.5   1.5   0.00062       1.8       7      86 ..     142     217 ..     140     234 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.071
                 HHHHHHHHHHHHHHHHHHHHHTTGSSTTTHHHHHHH.HHHHHHHHHHHTTSS....... CS
    Translin   5 riikasrditaaskkiifllhrvrsekteaqdkkakikkeakeklkeiakllasvaeel 63 
                 ++ +a  di+aa  k+ +l +  ++++t+   + ak+++ + e++++ a+ l++++ el
  EHT98007.1  82 KVGNALADIEAANDKVGALARD-NKTSTT--ATVAKMNSAQYEQVDKTAAALETIKDEL 137
                 5678889999999999555554.433322..2222222334444444444444444444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00062
                 HHHHHHHHHHHHHHHHHHHTTGSST.TTHHHHHHH.HHHHHHHHHHHTTSS..........GHHHHGGGTH.HHHHHHHHH CS
    Translin   7 ikasrditaaskkiifllhrvrsek.teaqdkkakikkeakeklkeiakllasvaeelqgsnayrYqrqisgglqelieal 86 
                 ikasr  +++  ++++llh++ + + +e +d+  + + ++++ ++++ +++a+  ++++     +Y + + g +q+++ ++
  EHT98007.1 142 IKASRSENQLKATMQTLLHEIAEAEeAE-KDRTGDNEISVHTSYSKLWAVMAEAIKNIR----TNYVDFYAGLMQKYTKMY 217
                 7999**9***************777444.333333345666666666666644444444....344444444444444433 PP

>> Carbpep_Y_N  Carboxypeptidase Y pro-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.96   2.9e+03       7      50 ..      42      88 ..      36     106 .. 0.45
   2 ?    5.3   0.2    0.0092        27      25     105 ..     149     230 ..     140     244 .. 0.71
   3 ?   -2.1   0.0       1.8   5.3e+03      65     105 ..     254     291 ..     238     303 .. 0.57
   4 ?    5.7   0.1    0.0068        20      43      80 ..     340     377 ..     318     381 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.96
  Carbpep_Y_N  7 lllgaassatslqalsiqnplkdlQqal...klelnyd...tkklsklle 50
                 ll  ++s++ts++     n l+d+ + l   +l+ + +    +k +++l 
   EHT98007.1 42 LLKQLISALTSTDS---DNQLEDVRNVLkrhGLNTSDAdflKSKVGNALA 88
                 44445555555443...344444333330003433222233344444443 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0092
  Carbpep_Y_N  25 nplkdlQqalklelnydtkklskllee.eekknnvfekiskvlneplkeltseakkiWsemelkfPdavsklkfktkpkkke 105
                  n lk   q+l  e++ + +  +   ++ e ++    +k   v++e++k++  +  +  + ++ k+ +  ++ + +++++ + 
   EHT98007.1 149 NQLKATMQTLLHEIAEAEEAEKDRTGDnEISVHTSYSKLWAVMAEAIKNIRTNYVDFYAGLMQKYTKMYEAYNEYVQKASAD 230
                  55554333333334333233333444448899999******************************99999999888766654 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.8
  Carbpep_Y_N  65 vlneplkeltseakkiWsemelkfPdavsklkfktkpkkke 105
                   ++ ++k ++    + W+ m+     +  +++ +++p++k 
   EHT98007.1 254 KFDSAVKGMDLGSVDNWDKMTDA---QKASMTATLEPAFKV 291
                  45555566666666666666544...444455555555554 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0068
  Carbpep_Y_N  43 kklsklleeeekknnvfekiskvlneplkeltseakki 80 
                  ++++++ ++  + n  f++ +kvl+ +++++  +ak++
   EHT98007.1 340 SNMQSFAQRYTQANSTFDNLNKVLSGAISSMADSAKDV 377
                  4445555447788888***************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1783  (0.0994478); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2514.02
//
Query:       EHT98008.1  [L=78]
Description: hypothetical protein CKS_4518 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 597.95
//
Query:       EHT98009.1  [L=659]
Description: hypothetical protein CKS_4517 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4808.85
//
Query:       EHT98010.1  [L=82]
Description: meromycolate extension acyl carrier protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   24.7   0.3    2.6e-05   24.5   0.3    1.1  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.3   1.4e-09   2.6e-05       3      67 .]      14      78 ..      12      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-09
  PP-binding  3 lrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                +++l+ +v gv ++ i++d++l  dl +DS+ +++ll++lee  gv++    +    t++++++++
  EHT98010.1 14 VTNLIYQVNGVLPKNISLDHSLVnDLLMDSIEMIDLLMRLEEI-GVALHEYKITSELTVGDIVKHV 78
                77888899999999*********99*****************8.*****99998899999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 662.75
//
Query:       EHT98011.1  [L=106]
Description: hypothetical protein CKS_4514 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 808.14
//
Query:       EHT98012.1  [L=57]
Description: FenI family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-07   29.9   0.0    3.2e-07   29.7   0.0    1.0  1  GHL10     Glycosyl hydrolase-like 10


Domain annotation for each model (and alignments):
>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.8e-11   3.2e-07     253     292 ..       6      44 ..       2      50 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.8e-11
       GHL10 253 ideivlqvYreklaafaaeldvlakreskevkptavglli 292
                  d+i++q+Y++ la+  a++dv   ++++ v+ t + l+i
  EHT98012.1   6 HDYIAPQIYWP-LARKVARYDVITRWWADIVRGTGTALYI 44 
                 69*********.************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 427.90
//
Query:       EHT98013.1  [L=256]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-75  251.5   0.0    6.6e-75  251.2   0.0    1.1  1  DUF1460   Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.2   0.0   3.7e-79   6.6e-75       2     210 ..      51     248 ..      50     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 251.2 bits;  conditional E-value: 3.7e-79
                 HHHHTTT-BB-TT---S-TT-S-S-SS-SS-B-HHHHHHHHHHHHHBSSHHHHHHHHHHHHBGGG--STTTB--STTTHHHHHHHTSEEE-GGG-B-TT CS
     DUF1460   2 israflgtpYkagtLiesaeekeklvirfdglDCftyvetvlalarssseeeFaknLkklRYkdgkvsflsRkHffsdWiannqkrllrdvtaeisnkk 100
                 +s+aflgtpY+a+tLi+++ ++e lv+ f+g+DCft+ ++v+al+rs+++++F +nL+++RY++g+v++lsR+HffsdW+a+++++ +rdvt +is+  
  EHT98013.1  51 VSSAFLGTPYQADTLIGGPGTPEALVVYFNGVDCFTLADYVEALTRSHDQKSFLHNLAEVRYTGGSVDYLSRRHFFSDWFATAPRN-ARDVTPDISP-- 146
                 89***********************************************************************************9.**********.. PP

                 -EEE--EEEHHHHHHTHHHHHHHHHHHHHHHTT--EEEEEEHHHH-HHHHTTS-TT-EEEEEEEES-EEEEEEEEEEEETTEEEEEEEETTTTE..EEE CS
     DUF1460 101 aktlkalvtkkkkynqkadeeellaglkvvekalkklkYipkealdqavlsrlktGdiiaivtektgLdVsHvGlvirkndelvlrhASslkkkkkvvd 199
                      ++   +kk+n+k d++e+++gl+++ +++   +Yip +++ q+vl+rlktGd+++++++++gLdVsHvG+v+r+++++++r+ASsl++++kvvd
  EHT98013.1 147 -----DYAVADKKLNRKPDGGEYIPGLGIHPRKI---NYIPGNTISQQVLDRLKTGDYVGVYSPLEGLDVSHVGIVVRHDGQVWFRNASSLAANRKVVD 237
                 .....8888999**********************...************************************************************** PP

                 EEHHHHHHHHT CS
     DUF1460 200 eplldylkkkk 210
                 +p+l+y++ k+
  EHT98013.1 238 SPFLEYMRAKP 248
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1912.29
//
Query:       EHT98014.1  [L=450]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-12   45.8   1.7    1.2e-11   44.6   1.7    1.7  1  HTH_28        Helix-turn-helix domain
    3.9e-10   40.2   1.4    3.9e-10   40.2   1.4    2.7  2  HTH_32        Homeodomain-like domain
    1.7e-09   37.2   0.6    4.4e-09   35.9   0.6    1.8  1  HTH_23        Homeodomain-like domain
    2.8e-09   36.9   2.6    2.8e-09   36.9   2.6    1.8  2  HTH_29        Winged helix-turn helix
    4.7e-06   26.8   0.1    1.3e-05   25.3   0.1    1.7  1  rve           Integrase core domain
    0.00079   19.1   0.6     0.0016   18.2   0.0    1.8  2  rve_3         Integrase core domain
     0.0015   19.0   1.2     0.0053   17.3   0.5    2.2  2  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
  ------ inclusion threshold ------
      0.041   13.7   0.0       0.42   10.5   0.0    2.5  2  WVELL         WVELL protein
      0.053   12.2   0.0      0.077   11.7   0.0    1.2  1  efThoc1       THO complex subunit 1 transcription elongation 
      0.068   13.0   0.5       0.24   11.2   0.5    2.0  1  N36           36-mer N-terminal peptide of the N protein (N36
        1.2    9.6   4.8        2.7    8.5   0.1    3.0  3  TetR_C_28     Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   1.7   7.1e-15   1.2e-11       1      51 [.      11      62 ..      11      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 7.1e-15
      HTH_28  1 qRleiikllaaGh.svreaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                +Rl++i+++++ + ++r+aA +l +s+r+v+r+++ry+e G agL + rr++
  EHT98014.1 11 HRLTVIQAVIEKRlRRRDAASQLDLSERQVQRLMNRYRESGAAGLTDVRRGK 62
                59*********************************************66644 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   1.4   2.4e-13   3.9e-10       2      71 ..      40     111 ..      15     113 .. 0.92
   2 ?   -0.4   0.4       1.1   1.8e+03      16      34 ..     412     432 ..     398     439 .. 0.52

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.4e-13
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrpr..klsdevrariiallreep.rWsprqlaarlaeregvkvShstvyr 71 
                 v+r ++Ry+e+G +gL d  rrg+p   ++++++r ri+ llre+   ++p + a++l+er+g+++S +  + 
  EHT98014.1  40 VQRLMNRYRESGAAGLTDV-RRGKPGthRIDEALRPRILTLLRENYvGFGPTLAAEKLQERHGITISVEALRC 111
                 89*****************.788997779*************554489**********9999*****998875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
      HTH_32  16 gLkdrprr.grpr.klsdevr 34 
                 g ++r+r  +++r ++ +++r
  EHT98014.1 412 GKRERSRHmPKRRaQIQAQLR 432
                 333444443333235555555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.6   2.7e-12   4.4e-09       3      49 ..       8      55 ..       6      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.7e-12
      HTH_23  3 sereRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeGlegl 49
                +e +Rl +++++ e +l++r++A +L+ s+r+v+r  +ryre+G++gl
  EHT98014.1  8 KEPHRLTVIQAVIEkRLRRRDAASQLDLSERQVQRLMNRYRESGAAGL 55
                6789*******************************************9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   2.6   1.7e-12   2.8e-09       1      61 [.      12      72 ..      12      73 .. 0.91
   2 ?   -3.0   0.1       4.6   7.5e+03      38      55 ..     405     422 ..     401     427 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.7e-12
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalld.rrrsgrprnrlseeq 61
                R+++++++ e   + +++A +l+ls+r+v+r  +r++e G+a+l d rr ++ + +r++e+ 
  EHT98014.1 12 RLTVIQAVIEKRLRRRDAASQLDLSERQVQRLMNRYRESGAAGLTDvRR-GKPGTHRIDEAL 72
                8999******************************************666.466777***985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
      HTH_29  38 egGlaalldrrrsgrprn 55 
                 +++l+a+ +r rs++  +
  EHT98014.1 405 QDELEAAGKRERSRHMPK 422
                 566777777777777655 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   8.2e-09   1.3e-05       5     118 ..     140     260 ..     137     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 8.2e-09
         rve   5 gelwqvDvtvvripdggg.kayllvvvddfsrlil.aealsdemdastvlalleravarfggvepervlsDngseytsk..........afrefladlg 91 
                 gel+q+D  + + ++g+  k+ llv vdd++++++   ++ +e +a +   +++  +++ g+  p +++sD+   ++ +          +f + l+  +
  EHT98014.1 140 GELIQIDGSHHDWFEGRApKCCLLVYVDDATGRLIhLRFCQSE-SAFDYMVATRDYIDKHGK--PVAFYSDKHAVFRVSqaetrrtgitQFGRALH--D 233
                 67888888844434333359*********99665505555555.999999999999999999..9********9999889******6554444444..5 PP

         rve  92 irvsftrpgrpqdnGkvErfhrtlkde 118
                  ++++ ++ ++q +G+vEr++ tl d+
  EHT98014.1 234 LNIDLICANSSQAKGRVERANLTLQDR 260
                 6666799999**************987 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.8   7.8e+03      29      50 ..      27      48 ..      21      50 .. 0.53
   2 !   18.2   0.0     1e-06    0.0016       3      56 ..     234     290 ..     232     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.8
       rve_3 29 ellneelfrslaearekleawr 50
                +   ++l  s ++++++++++r
  EHT98014.1 27 RDAASQLDLSERQVQRLMNRYR 48
                4455555555556665555555 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1e-06
       rve_3   3 ielsyiapgkPqqNglvEsfngtlrdellneel...frslaearekleawredYNte 56 
                 +++ +i   + q  g vE+ n tl d+l++e      + +++a++++e+++ d+N++
  EHT98014.1 234 LNIDLICANSSQAKGRVERANLTLQDRLVKEMRlenITGIDNANAWIETFISDFNRR 290
                 56677777889999******************9999899****************75 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.5   3.2e-06    0.0053      14      63 ..      12      62 ..       7      75 .. 0.88
   2 ?   -1.9   0.0       3.1   5.1e+03      42      69 ..     276     299 ..     245     313 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.2e-06
  LZ_Tnp_IS481 14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlld.rssr 63
                  r  +++ v+e+r   +++a +l +s r   + ++r+r  G  Gl+d r  +
    EHT98014.1 12 RLTVIQAVIEKRLRRRDAASQLDLSERQVQRLMNRYRESGAAGLTDvRRGK 62
                  5667899**************************************954445 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
  LZ_Tnp_IS481  42 aykwlarfraeGldGlldrssrPrrvPk 69 
                   a  w++ f ++    +  r +rP + Pk
    EHT98014.1 276 ANAWIETFISD----FNRRFARPAKYPK 299
                   45566555554....3345566666665 PP

>> WVELL  WVELL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.59   9.6e+02      57      69 ..     223     235 ..     216     237 .. 0.84
   2 ?   10.5   0.0   0.00026      0.42       4      39 ..     259     293 ..     256     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.59
       WVELL  57 wienyGskLHefq 69 
                  i ++G  LH+++
  EHT98014.1 223 GITQFGRALHDLN 235
                 599*******986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00026
       WVELL   4 erLteeLlekNeklsyaqArtWvElLweDFestyAk 39 
                 +rL++e+  +N     ++A +W+E + +DF+   A+
  EHT98014.1 259 DRLVKEMRLENI-TGIDNANAWIETFISDFNRRFAR 293
                 667777666654.36789*************99887 PP

>> efThoc1  THO complex subunit 1 transcription elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.7e-05     0.077     398     452 ..     280     335 ..     219     343 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
     efThoc1 398 tlpslesylekikleekdeeaekeee.eeaeekkivkqWraLRllrrqslfeFdkv 452
                 ++  + ++ +++++ +k++++  ++  e+  e ++++ W++LR l+++  f+ dk+
  EHT98014.1 280 IETFISDFNRRFARPAKYPKNLHRTVsESSPELDDIFAWQTLRTLSKSLTFQYDKI 335
                 23333444466677788888877777999*******************99999987 PP

>> N36  36-mer N-terminal peptide of the N protein (N36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00015      0.24       8      24 ..     422     438 ..     413     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 HHTHHHHHHHHCTSCCG CS
         N36   8 ERRAEKqAqWKAAnPLL 24 
                  RRA  qAq +A nP+L
  EHT98014.1 422 KRRAQIQAQLRAINPVL 438
                 59*************98 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2       0.2   3.3e+02      24      63 ..       3      43 ..       1      45 [. 0.76
   2 ?   -2.4   0.1       4.1   6.6e+03      75      93 ..      64      82 ..      64      83 .. 0.83
   3 ?    8.5   0.1    0.0017       2.7      46      91 ..      98     142 ..      90     146 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
                HHHGGGSHHHHHHHHHHHHHHS--TTGG.-HHHHHHHHHHH CS
   TetR_C_28 24 laalaedpellepwrewyrrwlerlead.gldpvlatlvrl 63
                  +   +p+ l  ++++++++l+r +a  +ld  ++++ rl
  EHT98014.1  3 VTMSNKEPHRLTVIQAVIEKRLRRRDAAsQLDLSERQVQRL 43
                4556678999************9666554888777777776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.1
                SSS---HHHHHHHHHHHHH CS
   TetR_C_28 75 glppldpeeraallerLle 93
                g + +d+++r ++l  L e
  EHT98014.1 64 GTHRIDEALRPRILTLLRE 82
                6788999999999998865 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0017
                 --TTGG-HH.HHHHHHHHHHHHHHHHHHH.HSSS---HHHHHHHHHHH CS
   TetR_C_28  46 erleadgld.pvlatlvrlAadGlwlael.lglppldpeeraallerL 91 
                 er+   g+  +v+a+ +++ adGlw  ++  + +   p +r+  l +L
  EHT98014.1  98 ERH---GITiSVEALRCWMTADGLWIPHArRQTRIYQPRLRRDCLGEL 142
                 333...455599*************98773333334566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3493.57
//
Query:       EHT98015.1  [L=37]
Description: hypothetical protein CKS_4509 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 304.13
//
Query:       EHT98016.1  [L=480]
Description: OspC1 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     4e-108  361.6   7.4     4e-108  361.6   7.4    2.1  2  Shigella_OspC  Shigella flexneri OspC protein
  ------ inclusion threshold ------
      0.054   14.1   0.2       0.68   10.6   0.1    2.4  2  Ank_2          Ankyrin repeats (3 copies)
       0.13   12.9   0.0        2.2    9.1   0.0    2.6  2  Ank_3          Ankyrin repeat


Domain annotation for each model (and alignments):
>> Shigella_OspC  Shigella flexneri OspC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.12   6.9e+02     259     286 ..      39      67 ..      31      76 .. 0.79
   2 !  361.6   7.4  6.7e-112    4e-108       1     290 [.     193     474 ..     193     476 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.12
  Shigella_OspC 259 vnsgdtmld.naikskdakmidlllkyga 286
                     n  dtml  n +k + a++i+ ++k+  
     EHT98016.1  39 QNVPDTMLKsNDLKNRSADVIKTFFKKTI 67 
                    578899995489**********9988754 PP

  == domain 2  score: 361.6 bits;  conditional E-value: 6.7e-112
  Shigella_OspC   1 veisshqkklplnkkhhtvdfganayiiehdspygymtltdhfdnvipfvfyhehqsffldkfkevveevsryvhgskgkidvpifntkdmklglg 96 
                    ve s+ + +lpln++h tvdfganayi++ + p+gy+tltdhfdn+ip++f heh+  f+ +f+ev +e+ r vhg+kg  d+pifn+kdmklglg
     EHT98016.1 193 VEFSDDKAQLPLNTRHSTVDFGANAYIVDEQFPHGYLTLTDHFDNTIPPAFMHEHKE-FIAQFSEVRNEIYRKVHGDKGTKDIPIFNSKDMKLGLG 287
                    7999*****************************************************.9************************************* PP

  Shigella_OspC  97 lylidfirkskdqsfkefcyeknldpvdldriinfvfqleyhiprmlstenfkkvklreisleeavkasnyeeinkkvtdkkialqalaysltnkk 192
                    l+li+f+r+s+d  fk f+ + nld  +ldriinfvfq+e+h+prm+st+nfk vklreis+e+avkasn++ +  ++ +k  a + +  ++   k
     EHT98016.1 288 LHLINFLRNSNDTEFKRFALNENLDGKNLDRIINFVFQPEFHVPRMVSTDNFKEVKLREISVEDAVKASNFKALSAHMRNKDDACKVMGLAIKHAK 383
                    ************************************************************************************************ PP

  Shigella_OspC 193 edvalyllskfeitkqdvieikklnnnrycelydveyllskdnasykvleyfinkglvdvnkkfkkvnsgdtmldnaikskdakmidlllkygail 288
                    +dv   l+skf +t+ +v+++            d+ey ls+++a+ k+l  f+++glv+ n+ f++vnsgdtmldna+k+++ +mi +ll ygai 
     EHT98016.1 384 KDVVDLLFSKFSFTRSNVVKMST-------SYEDIEYSLSNHSADEKILRDFLERGLVEPNNAFRRVNSGDTMLDNALKYNKKEMIAILLEYGAIR 472
                    *********************99.......678**************************************************************9 PP

  Shigella_OspC 289 dk 290
                    +k
     EHT98016.1 473 GK 474
                    87 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.079   4.7e+02      43      78 ..     359     395 ..     350     401 .. 0.70
   2 ?   10.6   0.1   0.00011      0.68      41      77 ..     424     470 ..     375     478 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.079
       Ank_2  43 klLleh.ad.ndgrtpLhyAarsghleivklLlekgad 78 
                 k+L +h  + +d   ++ +A+++   ++v+lL+ k ++
  EHT98016.1 359 KALSAHmRNkDDACKVMGLAIKHAKKDVVDLLFSK-FS 395
                 66777764445566888899999888999999843.44 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
       Ank_2  41 ivklLleh........ad..ndgrtpLhyAarsghleivklLlekga 77 
                 i++ +le         ++  n+g t L +A +++  e++ +Lle+ga
  EHT98016.1 424 ILRDFLERglvepnnaFRrvNSGDTMLDNALKYNKKEMIAILLEYGA 470
                 444444424434333422578999*******99999******99875 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.28   1.7e+03       7      23 ..     376     392 ..     372     396 .. 0.84
   2 ?    9.1   0.0   0.00036       2.2       2      27 ..     446     470 ..     445     473 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.28
       Ank_3   7 hlAarsgnleivkfLle 23 
                  lA+++++ ++v++L+ 
  EHT98016.1 376 GLAIKHAKKDVVDLLFS 392
                 4899**********987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00036
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G t+L  A+++++ e++  Lle +ga
  EHT98016.1 446 GDTMLDNALKYNKKEMIAILLE-YGA 470
                 89********************.886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3396.23
//
Query:       EHT98017.1  [L=307]
Description: hypothetical protein CKS_4504 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-11   42.2   0.0    1.2e-10   41.3   0.0    1.4  1  DDE_3         DDE superfamily endonuclease
    8.6e-11   41.3   0.7      3e-09   36.4   0.1    3.0  3  HTH_23        Homeodomain-like domain
      3e-09   37.4   1.1    2.3e-08   34.5   0.3    2.5  2  HTH_32        Homeodomain-like domain
    1.8e-07   31.1   0.7      9e-07   28.8   0.3    2.2  2  HTH_29        Winged helix-turn helix
    1.9e-06   27.4   4.2    3.7e-06   26.5   0.3    2.6  3  HTH_33        Winged helix-turn helix
    9.5e-06   25.6   0.3    0.00017   21.6   0.2    2.5  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.025   15.1   0.2      0.051   14.1   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.036   13.8   0.6       0.13   12.0   0.1    2.2  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   5.2e-14   1.2e-10       2      95 ..     177     270 ..     176     277 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 5.2e-14
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkses 95 
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++
  EHT98017.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRE 270
                 7899***************************************************************************************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.4e-12     3e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.9   0.0      0.09     2e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -3.1   0.0       3.4   7.7e+03       6      16 ..     274     284 ..     266     294 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.4e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98017.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.09
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98017.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.4
      HTH_23   6 eRlrillllae 16 
                 +R++ +l +++
  EHT98017.1 274 RRIQTVLTFRQ 284
                 56666655555 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.54   1.2e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.54
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT98017.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98017.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.3     4e-10     9e-07       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.1   0.0      0.86   1.9e+03      25      33 ..     128     136 ..     126     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98017.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.86
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98017.1 128 HASTIRRWL 136
                 568*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.8   8.6e+03       3      16 ..      81      94 ..      80      96 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.7e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   3 ?    1.6   0.1     0.099   2.2e+02      29      42 ..     241     254 ..     235     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.8
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98017.1 81 RRWPFEHICALLRE 94
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98017.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.099
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98017.1 241 RLLKHLKATYRRAK 254
                 9**********997 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   7.7e-08   0.00017       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.7e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98017.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98017.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   2.3e-05     0.051      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98017.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     6e-05      0.13      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT98017.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98017.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2345.53
//
Query:       EHT98018.1  [L=457]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-85  287.4   4.9    2.9e-85  286.2   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    1.2e-14   54.4   1.5    2.9e-14   53.2   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    9.5e-12   45.5   9.0    2.1e-11   44.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.013   15.3   6.4      0.022   14.6   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.016   15.5   4.4      0.072   13.4   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.017   14.3   1.7      0.035   13.3   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   12.9   6.8      0.048   12.2   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
      0.031   13.9   2.4      0.037   13.6   0.8    1.8  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.043   13.0   0.4      0.071   12.3   0.4    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.049   13.9   3.1      0.088   13.1   3.1    1.4  1  Troponin         Troponin
      0.082   12.6   2.7       0.28   10.9   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.11   12.5   0.7         18    5.3   0.0    3.1  3  UME              UME (NUC010) domain
       0.12   12.1  10.8       0.21   11.4  10.8    1.3  1  ERM              Ezrin/radixin/moesin family
       0.27   11.4   1.7       0.86    9.8   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
        0.3   11.2  10.9       0.54   10.3  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.36   10.9   5.3        2.9    8.0   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        0.9    8.7   3.1        1.4    8.1   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.1    7.9   7.8        4.9    6.7   7.8    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        2.6    8.4   6.9       0.49   10.8   3.1    1.8  1  HalX             HalX domain
        2.8    8.3   8.0        5.7    7.3   8.0    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        5.4    7.7   8.8         10    6.8   1.8    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.6     0.096        82     167     214 ..      34      82 ..      21     121 .. 0.49
   2 !  286.2   0.1   3.4e-88   2.9e-85       2     264 ..     187     455 ..     186     457 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.096
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT98018.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 286.2 bits;  conditional E-value: 3.4e-88
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98018.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98018.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpv 264
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+  R  
    EHT98018.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENVRRSS 455
                   4479******************************************************************987765 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   1.5   3.4e-17   2.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98018.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   9.0   2.5e-14   2.1e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.5e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98018.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   6.4   2.5e-05     0.022     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98018.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   8.4e-05     0.072      22      56 ..      23      57 ..      10      71 .. 0.82
   2 ?    3.1   0.4      0.14   1.2e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.4e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98018.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98018.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.7   4.1e-05     0.035      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98018.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.8   5.6e-05     0.048     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT98018.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   4.3e-05     0.037     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -0.8   0.0       1.1   9.2e+02     125     146 ..     351     384 ..     340     452 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.3e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98018.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98018.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6778888888888886666654444444444432 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   8.3e-05     0.071      24      76 ..      37      91 ..      32     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98018.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1    0.0001     0.088      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98018.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00033      0.28     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.9   0.1      0.18   1.6e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98018.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98018.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.5   1.3e+03      26      54 ..      16      44 ..       8      70 .. 0.76
   2 ?    3.3   0.0     0.091        78      15      53 ..      64     102 ..      58     105 .. 0.79
   3 ?    5.3   0.0     0.021        18       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.5
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98018.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                78999999999999999999988877765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.091
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98018.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.021
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98018.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.8   0.00024      0.21      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98018.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1     0.001      0.86      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.2   0.1       1.4   1.2e+03       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98018.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98018.1 167 ACCSCDHI 174
                  35555555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.9   0.00063      0.54      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00063
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98018.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0034       2.9      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.6   1.2     0.081        69      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0034
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98018.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.081
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98018.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.1    0.0017       1.4      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98018.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.8    0.0057       4.9      70     152 ..      13      97 ..       2     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0057
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98018.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98765 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.1   0.00057      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00057
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98018.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.0    0.0067       5.7       9      83 ..      14      92 ..      10     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0067
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98018.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                56777778888899999999*********************966655.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.8     0.012        10      22      53 ..      12      43 ..       9      65 .. 0.87
   2 ?    2.9   1.5       0.2   1.7e+02      34      57 ..      68      91 ..      49     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98018.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6678899******************9887665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98018.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      853  (0.0475766); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3011.36
//
Query:       EHT98019.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98019.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 841.87
//
Query:       EHT98020.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98020.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98020.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98020.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98020.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 712.87
//
Query:       EHT98021.1  [L=450]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-12   45.8   1.7    1.2e-11   44.6   1.7    1.7  1  HTH_28        Helix-turn-helix domain
    3.9e-10   40.2   1.4    3.9e-10   40.2   1.4    2.7  2  HTH_32        Homeodomain-like domain
    1.7e-09   37.2   0.6    4.4e-09   35.9   0.6    1.8  1  HTH_23        Homeodomain-like domain
    2.8e-09   36.9   2.6    2.8e-09   36.9   2.6    1.8  2  HTH_29        Winged helix-turn helix
    4.7e-06   26.8   0.1    1.3e-05   25.3   0.1    1.7  1  rve           Integrase core domain
    0.00079   19.1   0.6     0.0016   18.2   0.0    1.8  2  rve_3         Integrase core domain
     0.0015   19.0   1.2     0.0053   17.3   0.5    2.2  2  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
  ------ inclusion threshold ------
      0.041   13.7   0.0       0.42   10.5   0.0    2.5  2  WVELL         WVELL protein
      0.053   12.2   0.0      0.077   11.7   0.0    1.2  1  efThoc1       THO complex subunit 1 transcription elongation 
      0.068   13.0   0.5       0.24   11.2   0.5    2.0  1  N36           36-mer N-terminal peptide of the N protein (N36
        1.2    9.6   4.8        2.7    8.5   0.1    3.0  3  TetR_C_28     Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   1.7   7.1e-15   1.2e-11       1      51 [.      11      62 ..      11      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 7.1e-15
      HTH_28  1 qRleiikllaaGh.svreaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                +Rl++i+++++ + ++r+aA +l +s+r+v+r+++ry+e G agL + rr++
  EHT98021.1 11 HRLTVIQAVIEKRlRRRDAASQLDLSERQVQRLMNRYRESGAAGLTDVRRGK 62
                59*********************************************66644 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   1.4   2.4e-13   3.9e-10       2      71 ..      40     111 ..      15     113 .. 0.92
   2 ?   -0.4   0.4       1.1   1.8e+03      16      34 ..     412     432 ..     398     439 .. 0.52

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.4e-13
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrpr..klsdevrariiallreep.rWsprqlaarlaeregvkvShstvyr 71 
                 v+r ++Ry+e+G +gL d  rrg+p   ++++++r ri+ llre+   ++p + a++l+er+g+++S +  + 
  EHT98021.1  40 VQRLMNRYRESGAAGLTDV-RRGKPGthRIDEALRPRILTLLRENYvGFGPTLAAEKLQERHGITISVEALRC 111
                 89*****************.788997779*************554489**********9999*****998875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
      HTH_32  16 gLkdrprr.grpr.klsdevr 34 
                 g ++r+r  +++r ++ +++r
  EHT98021.1 412 GKRERSRHmPKRRaQIQAQLR 432
                 333444443333235555555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.6   2.7e-12   4.4e-09       3      49 ..       8      55 ..       6      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.7e-12
      HTH_23  3 sereRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeGlegl 49
                +e +Rl +++++ e +l++r++A +L+ s+r+v+r  +ryre+G++gl
  EHT98021.1  8 KEPHRLTVIQAVIEkRLRRRDAASQLDLSERQVQRLMNRYRESGAAGL 55
                6789*******************************************9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   2.6   1.7e-12   2.8e-09       1      61 [.      12      72 ..      12      73 .. 0.91
   2 ?   -3.0   0.1       4.6   7.5e+03      38      55 ..     405     422 ..     401     427 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.7e-12
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalld.rrrsgrprnrlseeq 61
                R+++++++ e   + +++A +l+ls+r+v+r  +r++e G+a+l d rr ++ + +r++e+ 
  EHT98021.1 12 RLTVIQAVIEKRLRRRDAASQLDLSERQVQRLMNRYRESGAAGLTDvRR-GKPGTHRIDEAL 72
                8999******************************************666.466777***985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
      HTH_29  38 egGlaalldrrrsgrprn 55 
                 +++l+a+ +r rs++  +
  EHT98021.1 405 QDELEAAGKRERSRHMPK 422
                 566777777777777655 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   8.2e-09   1.3e-05       5     118 ..     140     260 ..     137     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 8.2e-09
         rve   5 gelwqvDvtvvripdggg.kayllvvvddfsrlil.aealsdemdastvlalleravarfggvepervlsDngseytsk..........afrefladlg 91 
                 gel+q+D  + + ++g+  k+ llv vdd++++++   ++ +e +a +   +++  +++ g+  p +++sD+   ++ +          +f + l+  +
  EHT98021.1 140 GELIQIDGSHHDWFEGRApKCCLLVYVDDATGRLIhLRFCQSE-SAFDYMVATRDYIDKHGK--PVAFYSDKHAVFRVSqaetrrtgitQFGRALH--D 233
                 67888888844434333359*********99665505555555.999999999999999999..9********9999889******6554444444..5 PP

         rve  92 irvsftrpgrpqdnGkvErfhrtlkde 118
                  ++++ ++ ++q +G+vEr++ tl d+
  EHT98021.1 234 LNIDLICANSSQAKGRVERANLTLQDR 260
                 6666799999**************987 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.8   7.8e+03      29      50 ..      27      48 ..      21      50 .. 0.53
   2 !   18.2   0.0     1e-06    0.0016       3      56 ..     234     290 ..     232     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.8
       rve_3 29 ellneelfrslaearekleawr 50
                +   ++l  s ++++++++++r
  EHT98021.1 27 RDAASQLDLSERQVQRLMNRYR 48
                4455555555556665555555 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1e-06
       rve_3   3 ielsyiapgkPqqNglvEsfngtlrdellneel...frslaearekleawredYNte 56 
                 +++ +i   + q  g vE+ n tl d+l++e      + +++a++++e+++ d+N++
  EHT98021.1 234 LNIDLICANSSQAKGRVERANLTLQDRLVKEMRlenITGIDNANAWIETFISDFNRR 290
                 56677777889999******************9999899****************75 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.5   3.2e-06    0.0053      14      63 ..      12      62 ..       7      75 .. 0.88
   2 ?   -1.9   0.0       3.1   5.1e+03      42      69 ..     276     299 ..     245     313 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.2e-06
  LZ_Tnp_IS481 14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlld.rssr 63
                  r  +++ v+e+r   +++a +l +s r   + ++r+r  G  Gl+d r  +
    EHT98021.1 12 RLTVIQAVIEKRLRRRDAASQLDLSERQVQRLMNRYRESGAAGLTDvRRGK 62
                  5667899**************************************954445 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
  LZ_Tnp_IS481  42 aykwlarfraeGldGlldrssrPrrvPk 69 
                   a  w++ f ++    +  r +rP + Pk
    EHT98021.1 276 ANAWIETFISD----FNRRFARPAKYPK 299
                   45566555554....3345566666665 PP

>> WVELL  WVELL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.59   9.6e+02      57      69 ..     223     235 ..     216     237 .. 0.84
   2 ?   10.5   0.0   0.00026      0.42       4      39 ..     259     293 ..     256     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.59
       WVELL  57 wienyGskLHefq 69 
                  i ++G  LH+++
  EHT98021.1 223 GITQFGRALHDLN 235
                 599*******986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00026
       WVELL   4 erLteeLlekNeklsyaqArtWvElLweDFestyAk 39 
                 +rL++e+  +N     ++A +W+E + +DF+   A+
  EHT98021.1 259 DRLVKEMRLENI-TGIDNANAWIETFISDFNRRFAR 293
                 667777666654.36789*************99887 PP

>> efThoc1  THO complex subunit 1 transcription elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.7e-05     0.077     398     452 ..     280     335 ..     219     343 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
     efThoc1 398 tlpslesylekikleekdeeaekeee.eeaeekkivkqWraLRllrrqslfeFdkv 452
                 ++  + ++ +++++ +k++++  ++  e+  e ++++ W++LR l+++  f+ dk+
  EHT98021.1 280 IETFISDFNRRFARPAKYPKNLHRTVsESSPELDDIFAWQTLRTLSKSLTFQYDKI 335
                 23333444466677788888877777999*******************99999987 PP

>> N36  36-mer N-terminal peptide of the N protein (N36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00015      0.24       8      24 ..     422     438 ..     413     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 HHTHHHHHHHHCTSCCG CS
         N36   8 ERRAEKqAqWKAAnPLL 24 
                  RRA  qAq +A nP+L
  EHT98021.1 422 KRRAQIQAQLRAINPVL 438
                 59*************98 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2       0.2   3.3e+02      24      63 ..       3      43 ..       1      45 [. 0.76
   2 ?   -2.4   0.1       4.1   6.6e+03      75      93 ..      64      82 ..      64      83 .. 0.83
   3 ?    8.5   0.1    0.0017       2.7      46      91 ..      98     142 ..      90     146 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
                HHHGGGSHHHHHHHHHHHHHHS--TTGG.-HHHHHHHHHHH CS
   TetR_C_28 24 laalaedpellepwrewyrrwlerlead.gldpvlatlvrl 63
                  +   +p+ l  ++++++++l+r +a  +ld  ++++ rl
  EHT98021.1  3 VTMSNKEPHRLTVIQAVIEKRLRRRDAAsQLDLSERQVQRL 43
                4556678999************9666554888777777776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.1
                SSS---HHHHHHHHHHHHH CS
   TetR_C_28 75 glppldpeeraallerLle 93
                g + +d+++r ++l  L e
  EHT98021.1 64 GTHRIDEALRPRILTLLRE 82
                6788999999999998865 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0017
                 --TTGG-HH.HHHHHHHHHHHHHHHHHHH.HSSS---HHHHHHHHHHH CS
   TetR_C_28  46 erleadgld.pvlatlvrlAadGlwlael.lglppldpeeraallerL 91 
                 er+   g+  +v+a+ +++ adGlw  ++  + +   p +r+  l +L
  EHT98021.1  98 ERH---GITiSVEALRCWMTADGLWIPHArRQTRIYQPRLRRDCLGEL 142
                 333...455599*************98773333334566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3149.56
//
Query:       EHT98022.1  [L=107]
Description: antitoxin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-08   34.3   0.0    2.4e-08   33.9   0.0    1.2  1  HTH_3           Helix-turn-helix
    0.00055   20.2   0.0    0.00076   19.8   0.0    1.3  1  HTH_31          Helix-turn-helix domain
    0.00082   19.2   0.0     0.0013   18.6   0.0    1.2  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
     0.0016   18.4   0.0      0.002   18.1   0.0    1.3  1  HTH_19          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.1   0.0       0.02   14.5   0.0    1.3  1  HTH_50          Helix-turn-helix domain
      0.045   13.5   0.0      0.084   12.7   0.0    1.4  1  HTH_10          HTH DNA binding domain
      0.067   13.6   0.0        0.1   13.1   0.0    1.4  1  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.077   13.4   0.1        0.2   12.0   0.1    1.7  1  E3_binding      e3 binding domain
      0.088   12.5   0.0       0.13   11.9   0.0    1.2  1  CENP-B_N        CENP-B N-terminal DNA-binding domain
      0.099   12.7   0.0       0.15   12.1   0.0    1.3  1  Cro             Cro
       0.21   11.4   0.0       0.44   10.3   0.0    1.5  2  HTH_38          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.5e-11   2.4e-08       3      51 ..      15      63 ..      13      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.5e-11
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51
                e+++ ++ s++++A+ lGvs++++s+  +G+++ s+e++++l+  Lg+ 
  EHT98022.1 15 EYLEDNNVSLRKMAKDLGVSPAALSKVASGKAAVSPEMAVRLEAGLGIA 63
                78999*****************************************985 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.6e-07   0.00076      14      57 ..      21      63 ..      10      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.6e-07
      HTH_31 14 GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                ++s++ +A+ lgvs++ ls++ +G+   +sp+   +l  +lg  
  EHT98022.1 21 NVSLRKMAKDLGVSPAALSKVASGKA-AVSPEMAVRLEAGLGIA 63
                6899**********************.5*********9999975 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.9e-07    0.0013      11      44 ..      24      57 ..      21      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.9e-07
  YdaS_antitoxin 11 qkaLAealgvsqqaVsqWlkgkkqvpaervpeIe 44
                     +++A+ lgvs++a s++++gk  v++e  + +e
      EHT98022.1 24 LRKMAKDLGVSPAALSKVASGKAAVSPEMAVRLE 57
                    579*************************998877 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06     0.002       1      48 [.      10      56 ..      10      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllki 48
                G ++ e+ e ++ +++++a++lg+s++ +s+  +gk    s+e+  ++
  EHT98022.1 10 GGFITEYLEDNNVSLRKMAKDLGVSPAALSKVASGKA-AVSPEMAVRL 56
                5678899************************999988.7777777665 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.2e-05      0.02      24      39 ..      22      37 ..      12      42 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
      HTH_50 24 pStRklAkrLGvShta 39
                 S Rk+Ak LGvS +a
  EHT98022.1 22 VSLRKMAKDLGVSPAA 37
                59***********988 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-05     0.084      23      42 ..      21      40 ..      16      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
      HTH_10 23 rvtlkeLAkelGIskstlse 42
                +v+l+++Ak+lG+s+++ls+
  EHT98022.1 21 NVSLRKMAKDLGVSPAALSK 40
                799*************9986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.2e-05       0.1       3      37 ..      14      47 ..      12      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.2e-05
      HTH_26  3 relmadrgitkseLargtgisaatlsrlvkgkper 37
                 e + d++++  ++a+++g+s a ls+  +gk+  
  EHT98022.1 14 TEYLEDNNVSLRKMAKDLGVSPAALSKVASGKA-A 47
                68899*************************995.3 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00012       0.2       8      26 ..      25      45 ..      23      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                HHHHHHCT--TTTS-..--CT CS
  E3_binding  8 RklAkelGidLsdvk..GtGp 26
                Rk+Ak+lG+++++++  ++G+
  EHT98022.1 25 RKMAKDLGVSPAALSkvASGK 45
                9********999886668886 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.8e-05      0.13      17      47 ..      15      46 ..      12      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
                HHHHCTT.-HHHHHHHHT--CCHHHHHHHCHH CS
    CENP-B_N 17 qrleege.SkaelarrfnvpestlsdilknKk 47
                 +le+++ S +  a++++v +  ls++   K+
  EHT98022.1 15 EYLEDNNvSLRKMAKDLGVSPAALSKVASGKA 46
                589**********************9988776 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     9e-05      0.15      16      32 ..      25      41 ..      13      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9e-05
                HHHHHHHTS-HHHHHHH CS
         Cro 16 aktAkdlgvkqsaIsKA 32
                 k Akdlgv ++a+sK 
  EHT98022.1 25 RKMAKDLGVSPAALSKV 41
                699************95 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027      0.44      18      38 ..      19      39 ..      13      41 .. 0.78
   2 ?   -3.1   0.0       4.4   7.2e+03      16      24 ..      55      63 ..      53      64 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
      HTH_38 18 aeGlslreIArrLgrspsTIs 38
                + + slr++A+ Lg+sp   s
  EHT98022.1 19 DNNVSLRKMAKDLGVSPAALS 39
                4669*************8665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.4
      HTH_38 16 llaeGlslr 24
                 l++Gl+++
  EHT98022.1 55 RLEAGLGIA 63
                578999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 829.36
//
Query:       EHT98023.1  [L=93]
Description: HigB family toxin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-19   67.9   0.0    8.6e-19   67.8   0.0    1.0  1  HigB-like_toxin  RelE-like toxin of type II toxin-antitoxin s


Domain annotation for each model (and alignments):
>> HigB-like_toxin  RelE-like toxin of type II toxin-antitoxin system HigB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   4.8e-23   8.6e-19       1      93 []       3      93 .]       3      93 .] 0.98

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 4.8e-23
  HigB-like_toxin  1 kkFrdkslerffeddetnrkiqsklakklrrklqaldaaedekdlrappsnklekLkgdlkglySirvNkqyrlifkfkaeeaevvdlylDyH 93
                     k++++k+l++++e+++t +++ +k a+++r +l a+d+  +  ++   p+ +++ Lkgd k+ly i v  ++r++f+f +++a++ +   DyH
       EHT98023.1  3 KSWKHKGLKNLYEKGDT-SGVLAKDAERIRLRLLAIDEVGSTDEFSRYPGFRFHPLKGDRKNLYAITVRANWRITFEFTDGNAYILN-LEDYH 93
                     5789*************.9********************************************************************.89999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 720.75
//
Query:       EHT98024.1  [L=216]
Description: hypothetical protein CKS_4497 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-08   34.7   0.1    3.4e-08   33.8   0.1    1.5  1  DUF1380          Protein of unknown function (DUF1380)
  ------ inclusion threshold ------
      0.019   15.7   0.1      0.074   13.8   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
      0.036   14.1   0.3      0.099   12.6   0.2    1.6  2  Rhomboid         Rhomboid family
       0.12   11.6   0.0       0.24   10.6   0.0    1.5  2  N6_Mtase         N-6 DNA Methylase


Domain annotation for each model (and alignments):
>> DUF1380  Protein of unknown function (DUF1380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   7.6e-12   3.4e-08       1      83 [.       1      81 [.       1     104 [. 0.87

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 7.6e-12
     DUF1380  1 myGtreelcrllkekypaetplalivWspediealadgmeyslseqevravlarlddipeeqrlesGissaavmelieqvken 83
                myGt  +l   lk ++ +e++++li+  +ed++    +    l+e+ +  +++ + +   + + e G+ +++v+ + + v ++
  EHT98024.1  1 MYGTVSQLYHRLKTEFQGEEKITLIILRKEDVMKVLRDE--HLTEETAAEIVCDITTWDRDAQHEAGVGAETVRFIDSAVLHA 81
                9*******************************9877766..69******************************9877766655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.68   3.1e+03      54      61 ..      52      59 ..      10     102 .. 0.55
   2 ?   13.8   0.0   1.6e-05     0.074       6      96 ..     111     210 ..     108     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.68
                     BCCGBSSS CS
  Methyltransf_25 54 daedlpfe 61
                     d+++++ +
       EHT98024.1 52 DITTWDRD 59
                     33333322 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.6e-05
                      -TTSHHHHHHHCTS......T..SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGG.SSHHHHHHHHHHHH CS
  Methyltransf_25   6 cGtGrltlalakrl......g..kakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhh.lsdedlekalkeia 90 
                      cG G ++ a+a+ +      +  +  v  +Di++ + + a  +++  g+ +e+++g+  +++f   ++  v+ ++ ++  l+ +++ ka+ ei 
       EHT98024.1 111 CGAGGMVVAVAECMleagldPseQMFVNFIDIDPVAADMAFIQLSLLGIPAEVITGNTLTMQFSRVRYTPVYYINRIEErLKAQRRIKAMMEIM 204
                      99999999999986666455245778889***************99999************************98888779999999******* PP

                      HHEEEE CS
  Methyltransf_25  91 rvLkpg 96 
                      r L +g
       EHT98024.1 205 RSLSDG 210
                      *99876 PP

>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.2e-05     0.099      45     110 ..      72     151 ..      65     174 .. 0.74
   2 ?   -1.0   0.0      0.35   1.6e+03      31      52 ..     163     184 ..     156     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHHHHHH-S..............-EESSHHHHHHHHHHHHHHHHCCCCGS----HC......CCCC CS
    Rhomboid  45 rflllyllsglagsllsllfsaeses...........plvGaSGaifgllgallvlvprnrkllrkliia...llllllf 110
                 rf+   +l +++g ++ +l++   e+           p++Ga G++ ++  ++l  ++   +++++ +i+   + + ++f
  EHT98024.1  72 RFIDSAVLHAVTGLVARMLMHGVQEAvkreglftlsePTCGAGGMVVAVAECMLEAGLDPSEQMFVNFIDidpVAADMAF 151
                 555555556666666666666665556669************************************99996652222222 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHHHH CS
    Rhomboid  31 lvfGsplerrlGslrflllyll 52 
                 ++ G++l +++ ++r+  +y +
  EHT98024.1 163 VITGNTLTMQFSRVRYTPVYYI 184
                 5789999999999999999976 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.67     3e+03     239     275 ..      20      56 ..      13      68 .. 0.63
   2 ?   10.6   0.0   5.3e-05      0.24      46     117 ..     102     171 ..      80     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.67
    N6_Mtase 239 gkvlfidaseefkkkdrkknklteediekildtykek 275
                 +k+ +i  ++e  +k  + ++ltee  ++i+   + +
  EHT98024.1  20 EKITLIILRKEDVMKVLRDEHLTEETAAEIVCDITTW 56 
                 5566666666666666677777777777776555444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.3e-05
    N6_Mtase  46 sgesvyDpacGsggllvqaekvlkee.dgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtlek 117
                    +   p cG+gg+ v +++ + e   +  +++ +   ++++ ++ +a + l l gi  +   + +g+tl+ 
  EHT98024.1 102 GLFTLSEPTCGAGGMVVAVAECMLEAgLDPSEQMFVNFIDIDPVAADMAFIQLSLLGIPAE---VITGNTLTM 171
                 3445679***********999987662444555566689*******************999...788999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1493.74
//
Query:       EHT98025.1  [L=126]
Description: hypothetical protein CKS_4496 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   31.0   1.6    2.8e-07   30.8   1.5    1.3  1  DUF1380   Protein of unknown function (DUF1380)
  ------ inclusion threshold ------
       0.15   12.7   0.3        0.2   12.2   0.3    1.3  1  DUF1053   Domain of Unknown Function (DUF1053)
       0.19   11.0   0.1       0.22   10.8   0.1    1.1  1  EXS       EXS family


Domain annotation for each model (and alignments):
>> DUF1380  Protein of unknown function (DUF1380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   1.5   4.7e-11   2.8e-07      13     103 ..       2      88 ..       1     122 [. 0.83

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 4.7e-11
     DUF1380  13 kekypaetplalivWspediealadgmeyslseqevravlarlddipeeqrlesGissaavmelieqvkenrkt...vtvpadllatllrtaeq 103
                 +++y +++ ++li+W++ed+   a+     ++++  + +l+++d i++  + e G+s ++ ++++++++e++++    tvpa  l+  lr a +
  EHT98025.1   2 HQRYKSDELMTLIIWTKEDVLDSAQ-----ITNETDDEILQQIDGISD--QHEYGVSLETLQAVLDNIREEERQareATVPAAALEIALRVAWD 88 
                 67899***************98775.....56778899******9975..4599***************9865422279*******99998865 PP

>> DUF1053  Domain of Unknown Function (DUF1053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   3.4e-05       0.2      42      73 ..      17      48 ..       7      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
     DUF1053 42 kersasekarleeelderleqaIdglsskklw 73
                +++++ ++a+ ++e d+++ q Idg+s ++ +
  EHT98025.1 17 TKEDVLDSAQITNETDDEILQQIDGISDQHEY 48
                5667888999*****************99876 PP

>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.6e-05      0.22     310     330 ..      76      96 ..      55      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.6e-05
         EXS 310 lellEvlRRwvWvffRvEnEh 330
                  ++lE+  R+ W f+R+EnE 
  EHT98025.1  76 AAALEIALRVAWDFMRLENEQ 96 
                 689****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 969.09
//
Query:       EHT98026.1  [L=102]
Description: ISSfl3 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-09   35.7   0.0    1.6e-08   34.7   0.0    1.5  2  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
       0.18   11.6   0.0       0.22   11.4   0.0    1.1  1  TMEM51     Transmembrane protein 51


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.8e-12   1.6e-08      15      59 ..       1      45 [.       1      59 [. 0.86
   2 ?   -2.2   0.1      0.61   5.5e+03      17      30 ..      89     102 .]      88     102 .] 0.79

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.8e-12
   HTH_Tnp_1 15 iVreslepgksvsevArrhgvspnqLykWrrqyregeeaspaefe 59
                + ++sl+pg+ v+ +Ar+hgv++n  ++Wr ++r+g++ +  + +
  EHT98026.1  1 MAELSLQPGTCVAALAREHGVNDNLVFNWRNLHRQGLLDLASRAT 45
                56899******************************9998887744 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.61
   HTH_Tnp_1  17 reslepgksvsevA 30 
                 +++ +pg+ v+  A
  EHT98026.1  89 AQVCKPGAAVVAAA 102
                 68889999998765 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.22     209     237 ..      32      60 ..      27      61 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
      TMEM51 209 lhlkdfrlnlseptqn.pvtiEPlTPPPqY 237
                 lh + + l+l + ++  pv++EPl PPP+ 
  EHT98026.1  32 LHRQGL-LDLASRATLiPVSVEPLSPPPRH 60 
                 666664.66666665559**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 756.49
//
Query:       EHT98027.1  [L=46]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 329.53
//
Query:       EHT98028.1  [L=113]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-25   90.2   0.1    2.3e-25   89.1   0.0    1.5  2  DDE_Tnp_1_5  Transposase DDE domain
    2.2e-08   34.0   0.0    2.6e-08   33.8   0.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   2.5e-29   2.3e-25      43     112 .]       1      70 [.       1      70 [. 0.95
   2 ?   -1.9   0.0      0.46   4.1e+03      96     105 ..      87      96 ..      73     101 .. 0.65

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.5e-29
  DDE_Tnp_1_5  43 tvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskglhlvvdstGlkvlge 112
                  ++k++f+l+lR++qGf++s+++l+gl+l++pdys +s+rak+++v++++ ++ + +hlv+dstGlkv+ge
   EHT98028.1   1 MIKRVFRLTLRAAQGFIDSIFSLMGLPLRCPDYSSVSKRAKSVNVSFKTPTRGEIAHLVIDSTGLKVFGE 70 
                  79*********************************************77777777*************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
  DDE_Tnp_1_5  96 kglhlvvdst 105
                  + lh++vd+ 
   EHT98028.1  87 RKLHVAVDAS 96 
                  4578888864 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.9e-12   2.6e-08       5      61 ..      56     112 ..      52     113 .] 0.95

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.9e-12
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhd 61 
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd+ ++ ++ ++++  nv d
  EHT98028.1  56 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDASTHEVICADLSLNNVTD 112
                 689*************************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 817.68
//
Query:       EHT98029.1  [L=232]
Description: hypothetical protein CKS_4492 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-08   34.4  18.9    1.1e-08   34.4  18.9    1.9  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.046   14.1   3.2      0.045   14.2   1.9    1.8  1  DUF805           Protein of unknown function (DUF805)
       0.23   11.7   7.7      0.039   14.2   1.8    2.6  3  DUF2304          Uncharacterized conserved protein (DUF2304)
        4.2    7.4   0.0        4.2    7.4   0.0    4.9  7  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4  18.9   2.5e-12   1.1e-08     159     352 ..       3     181 ..       1     185 [. 0.67
   2 !    3.1   3.2    0.0082        37     120     165 ..     171     213 ..     170     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.5e-12
       MFS_1 159 ivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvg 257
                 +++l+ + l +lll+ ++ ++k + p+      +++ ++    a++++p  w + + + l+++ f+ ++ +lp +  ++ gls   +ag + ++l+l +
  EHT98029.1   3 LAMLFIAPLLALLLWLPQLTKKHQLPAAG----ENRTAIV---AVWRSPLAWQVTLFMGLNAMPFYVAVGWLPAI-LTDSGLS-SAQAGEVHGILQLTT 92 
                 34444444667777777777777777777....4455444...89999*888555555555679999*******7.*******.7************** PP

       MFS_1 258 ailallagrlsdrlgr.rrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ai +l++++ ++rl+  + +     l+++l+++g+++l++    ++l++  +l+Gfg+g  + + l ++   +  ++ag a++l ++a+s+g +++
  EHT98029.1  93 AIPGLILAATLRRLNDqKLAAAGVSLVTALSYIGILYLPNL---AMLWA--ALLGFGSGASMMLGLIFIGLRT--KNAGDAAALSGMAQSVGYLMA 181
                 *************9993334444444555666666666666...55444..5556666655555555555555..666666666666666666554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0082
       MFS_1 120 graigllsagfslGailgpllggllasslgWravfyilaivsllaf 165
                 g+a ++ ++++++G++l   +  l+    gW+++ ++ a++++ ++
  EHT98029.1 171 GMAQSVGYLMAAMGPLLLGKVQELFG---GWTVPLLLTAAIAIAGA 213
                 56667777777777777777777777...79999888888888763 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.9     1e-05     0.045      16      86 ..      49     136 ..      41     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1e-05
      DUF805  16 fvlfllllvivlallaavlaa........aavasalsvvlallllvps..lavtvRRlHDtgrsgw.........llllllvpliallll 86 
                 ++lf+ l  + + + + +l a        +a a+ +  +l+l + +p   la t RRl D+   +          ++ +l++p +a  +l
  EHT98029.1  49 VTLFMGLNAMPFYVAVGWLPAiltdsglsSAQAGEVHGILQLTTAIPGliLAATLRRLNDQKLAAAgvslvtalsYIGILYLPNLA--ML 136
                 4555544444444444444446666888888889999999999***9999999*******99777644443332211122222222..22 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.65   2.9e+03      34      51 ..       5      22 ..       2      28 .. 0.48
   2 ?   14.2   1.8   8.8e-06     0.039      15      75 ..      98     158 ..      87     180 .. 0.77
   3 ?   -0.5   0.0      0.31   1.4e+03      35      73 ..     172     209 ..     157     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.65
     DUF2304 34 wlllalilivlslfpqil 51
                +l++a +l++l + pq++
  EHT98029.1  5 MLFIAPLLALLLWLPQLT 22
                444444444444444444 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8.8e-06
     DUF2304  15 lliirlvrkkklkleysllwlllalilivlslfpqiltvlanllGvgrgtnllfllgivfl 75 
                 +l   l+r +  kl  + + l++al  i +   p++++  a llG+g+g+++++ l+++ l
  EHT98029.1  98 ILAATLRRLNDQKLAAAGVSLVTALSYIGILYLPNLAMLWAALLGFGSGASMMLGLIFIGL 158
                 33333444444555666677899999999999**********************8888766 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.31
     DUF2304  35 lllalilivlslfpqiltvlanllGvgrgtnllfllgiv 73 
                 ++ +++ +++++ p +l ++ +l+G g+++ ll+ ++i+
  EHT98029.1 172 MAQSVGYLMAAMGPLLLGKVQELFG-GWTVPLLLTAAIA 209
                 5667788888889999999999999.4555555555554 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   2.1         4   1.8e+04      24      35 ..       2      13 ..       1      15 [. 0.61
   2 ?    7.4   0.0   0.00094       4.2       4      19 ..      22      37 ..      20      40 .. 0.88
   3 ?   -2.3   0.0         1   4.6e+03      15      24 ..      56      65 ..      56      71 .. 0.85
   4 ?   -2.1   0.2      0.88   3.9e+03      20      29 ..     111     120 ..     109     127 .. 0.51
   5 ?    0.9   1.8       0.1   4.6e+02      24      40 ..     146     162 ..     134     163 .. 0.78
   6 ?   -2.5   0.6       1.2   5.3e+03      26      37 ..     179     190 ..     176     190 .. 0.67
   7 ?   -2.7   1.1       1.4   6.2e+03      21      30 ..     203     212 ..     201     218 .. 0.60

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 4
                     XXXXXXXXXXXX CS
  Gram_pos_anchor 24 GllallggllLl 35
                     +l++l  + lL+
       EHT98029.1  2 ALAMLFIAPLLA 13
                     666776666664 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00094
                     EBB-XXXXXXXXXXXX CS
  Gram_pos_anchor  4 skkkqLPkTGengnif 19
                     +kk+qLP  Gen +++
       EHT98029.1 22 TKKHQLPAAGENRTAI 37
                     69**********9876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1
                     XXXXXXXXXX CS
  Gram_pos_anchor 15 ngnifltaaG 24
                     n+++f+ a+G
       EHT98029.1 56 NAMPFYVAVG 65
                     7899**9999 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.88
                      XXXXXXXXXX CS
  Gram_pos_anchor  20 ltaaGllall 29 
                      l aaG+ +++
       EHT98029.1 111 LAAAGVSLVT 120
                      4455532222 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.1
                      XXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  24 GllallggllLlvkrRK 40 
                      G+ ++lg ++++++ ++
       EHT98029.1 146 GASMMLGLIFIGLRTKN 162
                      57888888888999875 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 1.2
                      XXXXXXXXXXXX CS
  Gram_pos_anchor  26 lallggllLlvk 37 
                      l+++ g lLl+k
       EHT98029.1 179 LMAAMGPLLLGK 190
                      788888887655 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 1.4
                      XXXXXXXXXX CS
  Gram_pos_anchor  21 taaGllallg 30 
                      ++ +++a++g
       EHT98029.1 203 LLTAAIAIAG 212
                      4444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1660.54
//
Query:       EHT98030.1  [L=101]
Description: replication initiation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.6   0.0       0.36   10.9   0.0    1.3  1  Mtd_N     Major tropism determinant N-terminal domain


Domain annotation for each model (and alignments):
>> Mtd_N  Major tropism determinant N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     2e-05      0.36      15      26 ..      66      77 ..      63      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2e-05
                ---TTEEEEETT CS
       Mtd_N 15 vLaaGElgfdTD 26
                +L aGEl+++TD
  EHT98030.1 66 TLPAGELLYCTD 77
                788********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 708.22
//
Query:       EHT98031.1  [L=37]
Description: hypothetical protein CKS_4490 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.01   15.1   0.0       0.01   15.1   0.0    1.0  1  IncFII_repA  IncFII RepA protein family


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   5.7e-07      0.01     114     148 ..       1      36 [.       1      37 [] 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.7e-07
  IncFII_repA 114 itrasrlitefle.plGlvkCekvWDkilesyiPki 148
                  ++r srli+e +   + +v+ ek+WD+  ++++Pk 
   EHT98031.1   1 MSRMSRLISEQVRyGVLAVSEEKMWDRASGQWLPKY 36 
                  58*******987624668999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 278.88
//
Query:       EHT98032.1  [L=166]
Description: integrase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   12.9   1.9       0.12   12.2   1.4    1.7  1  N36       36-mer N-terminal peptide of the N protein (N36)


Domain annotation for each model (and alignments):
>> N36  36-mer N-terminal peptide of the N protein (N36)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.4   6.6e-06      0.12       8      24 ..     138     154 ..     127     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.6e-06
                 HHTHHHHHHHHCTSCCG CS
         N36   8 ERRAEKqAqWKAAnPLL 24 
                  RRA  qAq +A nP+L
  EHT98032.1 138 KRRAQIQAQLRAINPVL 154
                 59*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1208.67
//
Query:       EHT98033.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98033.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98033.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98033.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98033.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 750.55
//
Query:       EHT98034.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98034.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 883.04
//
Query:       EHT98035.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-98  329.2   3.2    1.6e-97  326.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.029   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.036   12.6   6.9      0.056   12.0   6.9    1.3  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.48   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.1  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  326.4   0.0  1.9e-100   1.6e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHT98035.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 326.4 bits;  conditional E-value: 1.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98035.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98035.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98035.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98035.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98035.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98035.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98035.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98035.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98035.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98035.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98035.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98035.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98035.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98035.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98035.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98035.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98035.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98035.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98035.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98035.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98035.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98035.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98035.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98035.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98035.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98035.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98035.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98035.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98035.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98035.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1443  (0.0804841); expected 358.6 (0.02)
Passed bias filter:                     1023  (0.0570584); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 3663.43
//
Query:       EHT98036.1  [L=58]
Description: HopAM1-1 family type III effector [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 498.21
//
Query:       EHT98037.1  [L=216]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-40  138.6  15.2    3.7e-40  137.6  15.2    1.6  1  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
  ------ inclusion threshold ------
      0.015   15.5   1.0      0.022   15.0   0.1    1.8  2  DUF3130    Protein of unknown function (DUF3130
      0.019   15.2   0.6       0.37   11.1   0.1    2.2  2  BLOC1_2    Biogenesis of lysosome-related organelles complex-
       0.15   12.0   0.1       0.29   11.1   0.1    1.5  1  DUF5033    Domain of unknown function (DUF5033)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6  15.2   8.2e-44   3.7e-40       4     171 ..      17     170 ..       7     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 8.2e-44
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH....... CS
   MCPsignal   4 aeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkei 102
                 a + ++ A++       + ++m++i+++s  i++i++Vid+i +QTN+L LNAa+EAARAGe+GrGFaVVA+EV++LA+rsa aa +i +li       
  EHT98037.1  17 AVNVRDVAHKCSDAAGAITDTMKSIRDNSGRIAEITAVIDGIVFQTNILVLNAAVEAARAGEYGRGFAVVAGEVQTLARRSATAAGKICQLI------- 108
                 444555566666666677899***********************************************************************....... PP

                 .......HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 103 ndsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                        e+  + v +g  lv+++ e++++i +av +++d+v+ei++a++eq+++ie+v  av+++++ 
  EHT98037.1 109 -------ESNANSVGNGNRLVAHSSETMSDILSAVRRLTDTVEEITSATAEQARGIEQVGIAVTQMDST 170
                 .......89999******************************************************986 PP

>> DUF3130  Protein of unknown function (DUF3130
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.1   4.9e+03      50      73 ..      28      51 ..       4      54 .. 0.62
   2 ?   15.0   0.1   4.9e-06     0.022      35      86 ..     122     173 ..      88     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
     DUF3130 50 ielvdavekvqsvvkkDaerlkkl 73
                ++   a+ +  ++++++  r+ ++
  EHT98037.1 28 SDAAGAITDTMKSIRDNSGRIAEI 51
                444455566666666666666665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4.9e-06
     DUF3130  35 sYskansindlrsaLielvdavekvqsvvkkDaerlkklgaafikkDkeler 86 
                    +++++ d+ sa+  l d ve++ s++ + a+ + ++g+a ++ D   ++
  EHT98037.1 122 VAHSSETMSDILSAVRRLTDTVEEITSATAEQARGIEQVGIAVTQMDSTTQQ 173
                 334567889999*********************************9987555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.044     2e+02      42      86 ..      12      57 ..       2      71 .. 0.54
   2 ?   11.1   0.1   8.2e-05      0.37      19      83 ..     109     173 ..      92     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.044
     BLOC1_2 42 vaaslekkleklnekye.elqpylqqidqiekqvteLeeavseLDe 86
                +a++l++++ ++  k+  +     + ++ i ++  ++ e+ +++D 
  EHT98037.1 12 QASQLAVNVRDVAHKCSdAAGAITDTMKSIRDNSGRIAEITAVIDG 57
                4445555555554444434444444455555555555555444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.2e-05
     BLOC1_2  19 vedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavse 83 
                  ++ + + + N+ +++  + ++d+++ +++  + ++e   + +++ + i+q+   vt++ ++ ++
  EHT98037.1 109 ESNANSVGNGNRLVAHSSETMSDILSAVRRLTDTVEEITSATAEQARGIEQVGIAVTQMDSTTQQ 173
                 56777888999************************************************999875 PP

>> DUF5033  Domain of unknown function (DUF5033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.4e-05      0.29      29      84 ..     118     177 ..     103     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.4e-05
     DUF5033  29 lkdvPavsleemdevLeaLrkntnakeecesesvegy...kkvkm.taeyqaatrggatl 84 
                  + + a s e m+++L+a+r+ t++ ee  s + e     ++v + ++++ + t+ +a l
  EHT98037.1 118 GNRLVAHSSETMSDILSAVRRLTDTVEEITSATAEQArgiEQVGIaVTQMDSTTQQNASL 177
                 556778899*******************99988776544466654256677777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1855.30
//
Query:       EHT98038.1  [L=108]
Description: putative avirulence protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.8   0.4    1.9e-13   50.5   0.4    1.1  1  CesT      Tir chaperone protein (CesT) family


Domain annotation for each model (and alignments):
>> CesT  Tir chaperone protein (CesT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.4   1.1e-17   1.9e-13      29     119 .]       7      96 ..       4      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.1e-17
                 TTEEEEEEEESTTEEEEEEEEEEGGGCCTTEHHHHHHHHHCHHSCTTT-EEEEETTTTEEEEEEEEEGCC--HHHHHHHHHHHHHHHHHHH CS
        CesT  29 ddvllllleedsdeLllsaplgrlppdedgallerlLeaNllgartaggalgldeesglllLwarlelesldeeaLeallealvalaeqlr 119
                  ++++l ++ +sd Ll+++ l  ++ ++ ++ ++ lL++N+    + g++l++d e + + L+ ++ + + de+ + +l++ ++ +ae++r
  EHT98038.1   7 HEAAVLEVPDQSDCLLFHCQLINAEHQAGQNFYALLLQLNFEMSAMRGCWLAID-ENHIVRLCFQQTISQIDETSFGNLITGFITQAEEVR 96 
                 57889999********************999***********************.*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 934.37
//
Query:       EHT98039.1  [L=1835]
Description: putative avirulence protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.2e-279  929.8  15.4   4.2e-279  929.4  15.4    1.0  1  AvrE_T3Es    AvrE-family Type-III effector proteins (T3Es)
    0.00088   18.9   0.1       0.65    9.5   0.0    3.4  3  Tachylectin  Tachylectin


Domain annotation for each model (and alignments):
>> AvrE_T3Es  AvrE-family Type-III effector proteins (T3Es)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  929.4  15.4  4.7e-283  4.2e-279     232    1778 .]     295    1834 ..     280    1834 .. 0.90

  Alignments for each domain:
  == domain 1  score: 929.4 bits;  conditional E-value: 4.7e-283
   AvrE_T3Es  232 slsldakgkpdfstftaPelaslldsilarkkqkylaleskdnvqqqflldakGkllqlasddislavlrssreall...i.egkkPPdvkreredg 324 
                  sl ld kgk  ++  +   +++ll+++l+++ q+y+a+ +  +++ ++lld++G+l++l s++ + +v++ s ++ +   + + +  P  k  + +g
  EHT98039.1  295 SLTLD-KGKLRLADSNPTAMNTLLEQTLGKEGQHYVAHTASAEGNHHMLLDEQGHLFDLKSHEGGYSVFHNSLPSTVkmqLsKNNDEP-IKLVNDNG 389 
                  45555.6799999999999*****************************************************9976532231334444.44455568 PP

   AvrE_T3Es  325 nihvda.aanrkvqel..pdkahlaeltnvl.......ldkdderlrvhedrlykadsilteWkkaegledeaisslitssdnsvya.kdddkvvdl 410 
                  ++ +d  a ++kv  l  p+  h a l +++       ++++++ +r+h+d+++  +  +  W+ +   + + +s l++ +d+++ya +d +++ +l
  EHT98039.1  390 KLILDRgAEGQKVLHLnpPGEIHHAYLSGIWrhsvageMNQENQWVRIHDDKIHYLNNEVGVWQTS---DKTPYSQLSVQGDGKLYAvRDSRALHNL 483 
                  9888862557888777668*********998333222234455567*******************9...8899**************9999****** PP

   AvrE_T3Es  411 ssqfasavevedlisadvaadnevall.srkstqailktd....ms..PviyGlsmkdkkgleldGs.kadaaavGlsddklfiidsenklliadrs 499 
                  s +++s+  v+ ++s+ v+ + eva+l   +s   i +      +s   + + l   d+  +   G    +  ++ l d +lf++dse+kl+  + s
  EHT98039.1  484 SDNHVSESFVDKIKSFAVSEHGEVAVLtDTESPHHICLMPsanaVSseRIAFSLHLADTMQMLQRGEpHLETQSIALKDGRLFAADSEGKLYCGELS 580 
                  ***************************7778888887766344433456667778888876555554267899************************ PP

   AvrE_T3Es  500 lreeddikldlnPesaledlegvalGtdikvkrfinfedGnlavlikdkkGethlhaldedskklssGWnlsdalvldntlGlektvdesaldilnl 596 
                    ++ +  ++ + ++ l++     +G d ++++f   ++G++++l+kd   + h + l +d +++++GWnlsdal+++n+lGl+  ++++  +i nl
  EHT98039.1  581 QIKDGELPMNPMSQNVLKQ----HFGHDHRIEGFFTDDNGQVNALVKDNFRQMHACPLADD-NQFHAGWNLSDALIINNQLGLNN-INPAPHEIVNL 671 
                  **99999999999999999....9**********************************877.68*******************86.678899***** PP

   AvrE_T3Es  597 dkaGllalseGelfakdaltekWkdidikdvdeltrGadsnayvlkkGklkalklaeesnkiafdddtvlaqtarrtkvelqkelkklddev.ikaa 692 
                   + G l+l++G+++  d+lt  W +++    ++l++G d  ay+lk+G++k+l +++  + i+ ++d+ +a    r+k e +  l++ld+ +  +a+
  EHT98039.1  672 GHEGSLTLQDGKVHYFDQLTRGWTEAE-AGCQQLKKGLDGGAYILKEGEVKRLNINQSTSSISQGRDNFFALPHVRNKPEPGTALHGLDKTDkAQAI 767 
                  ***************************.99***********************************************************876379** PP

   AvrE_T3Es  693 avlsskkfvalddqnkl.tarskdhk......gvtldiPeleGdvkslsldkkktlfaltetGslyslPkekWsstklddqlraeWskvalPdse.d 781 
                  av++ + ++al +++++  ++ k+        + tl   +l+G +k + ldkk++l+a+t  G ++   +e+W+    +++    W k ++P +e  
  EHT98039.1  768 AVVGVNNYLALSEKGDIrSFQIKPGAqqlarpARTLSQEGLNGTLKDIHLDKKQNLYAVTREGEIFRQAREHWQ----QGESGRGWQKLTMPPGEsG 860 
                  **************998335555554889998779***************************************....7777888*********978 PP

   AvrE_T3Es  782 lkalfltddkvlklqiedaeGdqliqkkdsqW..dkfeqrpveenaled...vrdkleksakkyrvgktGlslatdvevfGrsGvekskkask.ker 872 
                  +  + ++      + + d    ql       W  +   +    e +l d   v  +l++  k   ++ tGl+++ +++  G++G e+ +++sk  er
  EHT98039.1  861 IDRIETDAHFHPVAVLLDGSRYQLR---GETWhpQNASEPTQLETGLRDsqrVFARLNQDMKGGLIPGTGLTIQASAQLAGKTGRENRQIKSKfAER 954 
                  8888777665555555555555555...44451144444445566654422288999**************************************** PP

   AvrE_T3Es  873 lkaniykntletPrpiktvadsvqhryqGrlGlkevyetesalfkelellnvdikrdPaktsdlkaridaleaklGetGktlkkeleslreelensa 969 
                  ++a i+ +t+ tPrp+k++a ++qhr+qGr+Gl  vye + al k+le  nv  k       dl++++dal+  +Ge+G+tl k++  +reelensa
  EHT98039.1  955 VRAYIFNPTMATPRPLKNIAYNLQHRWQGRRGLSAVYEMQGALIKQLESQNVRNKG---AQTDLQSKLDALD--FGEQGATLLKNIKQFREELENSA 1046
                  ************************************************99886553...345**********..*********************** PP

   AvrE_T3Es  970 lralialGksygkaknlkqqdGilkqdaela...kPsvrmqfgkklkdlktklnfkrsGhdlvkelqdvlkqvaaseeskvkklltalkekklklsh 1063
                   +a i lGk           +G+l  +++++   kP          k   + +n +rsG dl k l ++++ +++s +sk +kll+ +   +l++sh
  EHT98039.1 1047 TQAAILLGKH----------QGVLTSNGQINekfKPP-------ISKAAIQSFNVNRSGRDLSKGLEQAVRAASPSPQSKLQKLLSHFVTSGLNMSH 1126
                  *********9..........9*********9988888.......33456799********************************************* PP

   AvrE_T3Es 1064 qkldvPlGrrrdadedmslskarlvldlltlkklnalldsvell....asqedveslskkleklkdvkyaenPvkvvtdsGvtdnkaleanyeavkt 1156
                  qk d+PlGr+rd +++ +l+k+rl+ld++tl +l  ++d++ l+    + ++++  l++++e l++++y  nPvk  td+G+t n aleany+avk 
  EHT98039.1 1127 QKGDIPLGRQRDPNDENALTKSRLILDVVTLGELHEFVDKAALIsghnPDPSQIAQLHQQFEALRENQYEANPVKQFTDMGFTHNAALEANYDAVKA 1223
                  ***********************************************999*********************************************** PP

   AvrE_T3Es 1157 llkalkkddnalkvltkaalkskdqaelaskfkdllktlkheddevalsrsysvnlkaafiilaek.vtglfdtasatekrsyileaertedGvalt 1252
                  ++ a++k+ + +++ t++ l+++ +a l  k+kd l  l+ ++  +++sr+ys++l +af++  +k   ++ + a+ t +r+y+l + rt++G+ + 
  EHT98039.1 1224 FINAFRKEHHGVNLTTRTVLETQGNASLEKKLKDTLLSLNAGES-MSFSRAYSGGLSTAFVPTIKKiPVPIVPGAGITLDRAYNLTFGRTDGGLDVS 1319
                  ******************************************99.*****************9999889**************************** PP

   AvrE_T3Es 1253 lkselagsvkaslGvGkdylPdlfdadnlaisvd..vddnktlsPdarlnvdltatvdlstlaevkftvkdedidafvddltkrqlkPddllkkavd 1347
                  +  +++ +   s+ +G+d lP +  ++  a        +++++sPd+r+++ l + ++ + ++ + f++ ++++ +f++ ++++ l P dl+kk+++
  EHT98039.1 1320 FARDGGVTGTLSVSTGHDLLPYMTGTQTTAENASdwLSKKHKISPDFRIGATLSSNMQRTLQNSLNFKLTEDELPSFLNGMIQGTLTPVDLMKKGIE 1416
                  *99999999999999******999887777655412355679******************************************************* PP

   AvrE_T3Es 1348 hvstearkftfdldasltldirarvnlieerdPnadpnsdsfsavvrlGfavtitvnlmtksdesktyknddtelkersklkertlskvsasaslal 1444
                  h+  +++k  f++d s + d+ra++n++ +    + p+    +a  r   + ++++nl+    e  t  ++  +    s +++ +++    +a+l l
  EHT98039.1 1417 HQMKQGSKLVFNIDVSAASDLRAGINITAD---GSKPD----TATFRASTGLSASANLVSARSERSTTVGQLGNTVSASDNRPTFFNSANIGANLTL 1506
                  ****************************99...33343....57779999999999*9999888888888888889********************* PP

   AvrE_T3Es 1445 tiGtsitaqtGiPvsapgpt.....pasqtaannlsaaldavvenktvkeikaklvvakPitkedleklskalaevfldattkakleeladplnary 1536
                   +G ++    G  vs  g t     p +  a+  +  +   +++n+t + i + +  a P+ ++d++ l  +l++ f d+   + l  l        
  EHT98039.1 1507 SAGVAHDFIRGASVSQDGTTkpekkPGTFPAFMSVNVSAALALDNRTTQSISVEMKHADPVSQNDIDELISTLGKHFKDSMSTTLLSSL-------K 1596
                  ******9999999998887632222444456666666666789**********************************************.......2 PP

   AvrE_T3Es 1537 tgkkedeviqkqldlleelfldisvkkdnddqykalrdlkkaivehaaseakvsvldnakveliktnlsnlsseelltkigslvkdavardaakrva 1633
                      +d    +ql+ l+ +f  + v    dd+y+a+r lk+ +++ +a e+ +  l +ak  +  +nls l  + +  ++      a  + +a+r++
  EHT98039.1 1597 NQENPDPA--EQLKSLDRHFSYNNV--VGDDRYEAVRSLKQLVQRQRAAESNMMELGSAKHTTQYSNLSRLDENGIFDILHHHFNAALPPTSATRIS 1689
                  33445555..9*********99875..689******************************************************************* PP

   AvrE_T3Es 1634 elvkqdPkledmlkemetrilslarvrlelkddlvdkiekdslnGkldvddlkslledreerrlkrlvviesaeyaenfssPlPlvsasssasvsve 1730
                  +++ ++P l+++++++++++ + a v +elkd l+d+ ek  l+Gk+  ++l  l++dr++ r++++ v +s  ++e+f  P+ l+ as sa +s+ 
  EHT98039.1 1690 NMMANNPLLKALIQKLQSSPFTSASVSMELKDGLRDQTEKAILDGKVGREELALLFQDRNNLRIRSINVSQSVSKSEGFNMPTLLLGASNSAGLSMG 1786
                  ************************************************************************************************* PP

   AvrE_T3Es 1731 ktlaaikfvyGadqdkPlsykldGelvrakadlkeaieelkkesvelk 1778
                  +  + i+f+yG+dqd P  ++l+Ge+++a+ d+  a+ elkke++e+k
  EHT98039.1 1787 RNIGTINFKYGQDQDTPRRFTLEGEIAKANPDVASALSELKKEGFEMK 1834
                  **********************************************98 PP

>> Tachylectin  Tachylectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0066        59      77     102 ..     450     480 ..     393     505 .. 0.73
   2 ?    1.5   0.0      0.02   1.8e+02      89     158 ..     561     635 ..     556     649 .. 0.71
   3 !    9.5   0.0   7.2e-05      0.65      56     117 ..     784     842 ..     762     865 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0066
                  SSS.....TT-SEEEE-TTS-EEEEETT.EE CS
  Tachylectin  77 geW.....grfkkivvdpkGvlYavtadGeL 102
                  g+W       +++++v+  G+lYav ++  L
   EHT98039.1 450 GVWqtsdkTPYSQLSVQGDGKLYAVRDSRAL 480
                  5554443344677888888888888776555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.02
                  TTS-EEEEETT.EEE..EE---SSTTS-HHHH-EEEESSSGG...G-SEEEE-TT--EEEEE.TTEEEEES--SS CS
  Tachylectin  89 pkGvlYavtadGeLy..kgppPsdeetsWeavatkvidtgwk...dfdslfadpdGvlYavtstGrlvkrakPae 158
                  + G+l+a + +G+Ly  +    +d+e   +  ++ v+++ ++   +++  f d++G + a  ++   +++a P  
   EHT98039.1 561 KDGRLFAADSEGKLYcgELSQIKDGELPMNPMSQNVLKQHFGhdhRIEGFFTDDNGQVNALVKDNFRQMHACPLA 635
                  579999999999999765555666777778888888888886333577778888898888875553356666655 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 7.2e-05
                  EE---.SB-HHHHHHHSEEEE.ESSSTT-SEEEE-TTS-EEEEETT.EEEEE---SSTTS-HHH CS
  Tachylectin  56 lgslr.sngaeewlssarvvg.kgeWgrfkkivvdpkGvlYavtadGeLykgppPsdeetsWea 117
                  ++s + + ga+++++ ar  + +g  g+ k+i +d+k +lYavt +Ge+ ++     + ++W++
   EHT98039.1 784 IRSFQiKPGAQQLARPARTLSqEGLNGTLKDIHLDKKQNLYAVTREGEIFRQ-----AREHWQQ 842
                  55555566788888666665515777999*******************9974.....5555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.46
# Mc/sec: 11940.03
//
Query:       EHT98040.1  [L=242]
Description: HrpN family hypersensitivity reaction elicitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-72  242.3  20.7    4.6e-66  223.6  13.8    2.0  2  Hairpins  HrpZ


Domain annotation for each model (and alignments):
>> Hairpins  HrpZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6  13.8   2.6e-70   4.6e-66      69     220 ..      25     203 ..       3     208 .. 0.93
   2 !   23.5   0.8     2e-09   3.6e-05     272     307 ..     207     241 ..     203     242 .] 0.90

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 2.6e-70
    Hairpins  69 aadgkqptegkqgaykkdvtdALdkligekLgdnfgasaeggl........gsglGgkGlqelsggadqqdLgnqvltGlgk....saLndlltesdss 155
                 +  g+qp++++q+aykk+vtdAL++++g++L++++g+++eggl        g+glGgkGlq+lsg+ad+q+Lgn+++tG+g+    +aLn+++t+sdss
  EHT98040.1  25 GNAGRQPSQDEQNAYKKGVTDALTAFMGGGLSQVAGNGSEGGLdggmglggGNGLGGKGLQDLSGPADFQQLGNAIGTGVGMkagiEALNNIGTHSDSS 123
                 3449************************************999******************************************************** PP

    Hairpins 156 grsF.skdDrpllkeiaqFmDdnpeqfgkp............DsksWakeL.k.eDdgldgaetaqFrkAldiiksalaq 220
                 +rsF +k+Dr+l++e++qFmD++pe+fgkp            D+ksWa++L + +Ddg+++a+++qF+kA++iiksa+a 
  EHT98040.1 124 TRSFiNKEDRALAREVGQFMDQYPETFGKPqyqknadsavktDTKSWAEALsQpDDDGMTPASMEQFNKAKGIIKSAMAG 203
                 ***************************************************989************************93 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2e-09
    Hairpins 272 eanLqargaggsdlqisaaqvadalvnalLqknlaa 307
                 ++nLqargaggs+++i+a+ ++da++n++L ++l+a
  EHT98040.1 207 NINLQARGAGGSSMGIDATLTGDAINNMAL-TRLSA 241
                 579***************************.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2072.09
//
Query:       EHT98041.1  [L=73]
Description: HrpV family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 626.45
//
Query:       EHT98042.1  [L=39]
Description: HrpT family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 330.65
//
Query:       EHT98043.1  [L=617]
Description: type III secretion system outermembrane pore forming protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-35  120.1   0.1    1.3e-34  119.2   0.1    1.5  1  Secretin     Bacterial type II and III secretion system prote
    9.3e-24   83.6   1.2    8.6e-19   67.7   0.6    3.3  3  Secretin_N   Bacterial type II/III secretion system short dom
    9.9e-06   25.4   0.7      2e-05   24.4   0.0    1.9  2  TraK         TraK protein
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.22   11.1   0.0    1.4  1  Mu-like_Pro  Mu-like prophage I protein


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.1     3e-38   1.3e-34       1     169 [.     304     461 ..     304     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 3e-38
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvtedgs...irlkidvevssiassqavtaegn 96 
                 ale eg a+++++P++ltl+n++A+i+  q+ ++++t+e+         a +++ +++g+sL+vtP+  + +    i+l id+e+  ++++++     +
  EHT98043.1 304 ALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITATGERV--------A-DIQPVTAGTSLQVTPRAVGHQDhasIQLVIDIEDGHVETNND-----G 388
                 7999*******************************333333........3.39*************9988433367************98653.....6 PP

    Secretin  97 svptisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPriv 169
                 + + ++r  ++t++ + ++  lv+GG+  +e+ e+ +++PlLgdiP+lG+LF st  + +++e+l+++tPr++
  EHT98043.1 389 QATGVKRGTVSTQALISENRALVLGGFHVEESGERDRRIPLLGDIPWLGRLFTSTRHEISQRERLFILTPRLI 461
                 8999*******************************************************************97 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.9e-05      0.13      11      75 ..      62     108 ..      39     112 .. 0.85
   2 !   67.7   0.6   1.9e-22   8.6e-19       1      81 [.     118     247 ..     118     248 .. 0.97
   3 ?   -2.8   0.0         2     9e+03      13      23 ..     488     508 ..     467     537 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHH CS
  Secretin_N  11 aadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikq 75 
                 a d+ ++L++++                  ll++++ +   p+ + +lv+g+p+++ +++++ +q
  EHT98043.1  62 APDIKQALSGIG------------------LLDPRFGWGELPDDGVVLVTGPPRYLSLVKRFSEQ 108
                 445666677776..................***************************99987665 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 1.9e-22
                 EEEEE-SSS-HHH..............HHHHHHHHCCTT................................................SSTT-TTSEEEE CS
  Secretin_N   1 vrvfpLkyasaad..............lasiLrellgggggesas...................................sgassqsgallgkggrvva 50 
                 v +fpLkyas+ad              +a++L+el++g++++  s                                    ++  ++++ ++ +gr++a
  EHT98043.1 118 VMTFPLKYASVADrtihyrdqtlvipgVATMLNELMNGKRAAPVSasgaegtiggadnaammqntqsllarlsnhanntnRPGDRDNNSVDDLSGRISA 216
                 679*************************************99999**********************************88889999999999****** PP

                 ETTTTEEEEEECHHHHHHHHHHHHHHCTSSS CS
  Secretin_N  51 dprtNsllvrgspervarirqlikqLDvpra 81 
                 d+r+N+ll+r++++r+++++qli+++D+p++
  EHT98043.1 217 DVRNNALLIRDDDKRREEYAQLINKIDIPQN 247
                 *****************************97 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2
                 H..........HHHHHHHHCC CS
  Secretin_N  13 d..........lasiLrellg 23 
                            + ++Lr+l +
  EHT98043.1 488 RrhsnvnlqdmVENALRDLAE 508
                 044444444456667777763 PP

>> TraK  TraK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3      0.76   3.4e+03      15      37 ..     172     194 ..     158     196 .. 0.76
   2 !   24.4   0.0   4.4e-09     2e-05     119     231 .]     475     598 ..     447     598 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.76
        TraK  15 hAdqsveasdgaaveialSskep 37 
                  Ad++ + ++ ++  ++lS++  
  EHT98043.1 172 GADNAAMMQNTQSLLARLSNHAN 194
                 799999*************9865 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 4.4e-09
        TraK 119 irknasleaaaaeek....aykellvaltravysgrvpagysveevrkrvvllkea..glrltrvr.ey...eGeglrgeeyrlkNvskapmeLaekef 207
                 +r+++s + a +e++     +++ +  ++r +++ ++pag++ e+  +r    ++   gl +   r ++   +   lr+++  ++N +++++ ++e+++
  EHT98043.1 475 NRQQLSDAMARVERRhsnvNLQDMVENALRDLAERQTPAGFKAEASGERLNDICQStpGLLFDNARgQWyssDSGSLRLSVGVVRNITHNTLRFNEASC 573
                 5555555555555556656556666666688888888888888766666666666667555543322331225567999999***************** PP

        TraK 208 lrpgvlavalerhn.Lapgettrvy 231
                 + + +lava++ h  Lapge+++vy
  EHT98043.1 574 AGKRTLAVAVWPHSsLAPGESAEVY 598
                 *************77*********9 PP

>> Mu-like_Pro  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.8e-05      0.22     207     250 ..     462     505 ..     443     514 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.8e-05
  Mu-like_Pro 207 akavDlakyvpveaaqalqaelaalkakiaekeaealiekAlke 250
                   ++ D+++yv +++ q+l++ +a ++++ ++ ++++++e+Al++
   EHT98043.1 462 GDQTDPTRYVSADNRQQLSDAMARVERRHSNVNLQDMVENALRD 505
                  4558*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.19s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4859.00
//
Query:       EHT98044.1  [L=74]
Description: HrpF family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-32  111.7   0.8    1.6e-32  111.6   0.8    1.0  1  HrpF      HrpF protein
  ------ inclusion threshold ------
      0.078   13.3   0.0      0.089   13.1   0.0    1.2  1  Dmd       Discriminator of mRNA degradation


Domain annotation for each model (and alignments):
>> HrpF  HrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.8   1.8e-36   1.6e-32       1      74 []       1      74 []       1      74 [] 0.99

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 1.8e-36
        HrpF  1 msSlealqrrLDsaleraqsnlDdialnvaEgasveDlaAfneAsrqasnaswavneeLrvkHglaKaiIddiq 74
                msSl+++qrrLDs++era+++lD++ +n++Eg s++D+ Af+eAs+  s+aswa+ +eL+vkHgl Ka+I++i+
  EHT98044.1  1 MSSLSSIQRRLDSQFERAKNQLDEATMNASEGYSQADSFAFFEASMGLSSASWAATQELTVKHGLIKALINEIN 74
                9***********************************************************************97 PP

>> Dmd  Discriminator of mRNA degradation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.9e-06     0.089      14      50 ..      36      72 ..      24      74 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-06
                TS-EEEEEEEE-GGGHHHHHHHHHHHHT-EEEEEETT CS
         Dmd 14 nesmftkeitmmkddvqwattqyaevnkalvkafidd 50
                 +s    e +m      wa+tq   v   l+ka+i++
  EHT98044.1 36 ADSFAFFEASMGLSSASWAATQELTVKHGLIKALINE 72
                56666667788888899*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 578.47
//
Query:       EHT98045.1  [L=199]
Description: type III secretion system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-42  144.6  15.6    3.5e-42  144.5  15.6    1.0  1  HrpE          HrpE/YscL/FliH and V-type ATPase subunit E
     0.0016   17.9   5.8     0.0025   17.2   5.8    1.4  1  vATP-synt_E   ATP synthase (E/31 kDa) subunit
     0.0057   17.1   2.2      0.069   13.7   0.2    2.3  2  TPR_19        Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.09   12.4   0.0       0.13   11.9   0.0    1.3  1  HCV_NS2       Hepatitis C virus non-structural protein NS2
       0.11   13.0   4.7       0.19   12.3   4.7    1.3  1  V-ATPase_G    Vacuolar (H+)-ATPase G subunit
       0.18   12.1   2.7       0.21   11.9   2.2    1.4  1  Cdh1_DBD_1    Chromodomain helicase DNA-binding domain 1
          4    7.5  10.4       0.61   10.2   5.7    1.9  1  DivIVA        DivIVA protein


Domain annotation for each model (and alignments):
>> HrpE  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5  15.6   1.4e-45   3.5e-42       1     190 [.       1     189 [.       1     190 [. 0.98

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 1.4e-45
        HrpE   1 mLtkrslalvagaavleeeilrreqlaeslrarellaeArlqAeqllaqarekaeellevaveqAeaqFWeqAnalLrglqqeRealeeqlltaveqLL 99 
                 mL +r + lv+g + + ++++ r+qla + +ar++++eA + Ae+++  a++ ae       + Ae +FW+ A+ +   +q++ ++ e ++l+ ++ +L
  EHT98045.1   1 MLIRRHIDLVNGKD-DLAPVISRHQLAVQEQARTIIQEAHQRAEKIISAAEQEAEASSLLVRQRAEEAFWKRADTMFMHWQKQQQQWESDVLSVMDVVL 98 
                 9********97765.6799***********************************999999999************************************ PP

        HrpE 100 sdalarlLdetplaeRasALlRqLlksqqgearatLycHPeaaadvaaWLaehsdleWklksDealasdslkLitaqGvlsldWaslrkqL 190
                 ++al++lL e+p+++R + LlRqLl ++++  +atL cHP ++a++a  L++ s+l+W+l+ +e+l +dslkL+t qG l ldW+ + +qL
  EHT98045.1  99 EQALEQLLTEVPESQRLQGLLRQLLLEKTQTDKATLCCHPSQQASIATMLENYSHLNWQLQPEESLPPDSLKLVTPQGELYLDWQLASQQL 189
                 ****************************************************************************************998 PP

>> vATP-synt_E  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   5.8   9.8e-07    0.0025       2      80 ..      34     112 ..      33     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.8e-07
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  vATP-synt_E   2 IrqeAeekAeeIkakaeeefeiekaklveeeeekieeayekkeKqaelqkkiaiSnalnkarlkvLkareevleevfee 80 
                  I qeA+++Ae+I++ ae+e+e     + +++ee+  ++ +    + + q+++  S +l  +   + +a e++l+ev e 
   EHT98045.1  34 IIQEAHQRAEKIISAAEQEAEASSLLVRQRAEEAFWKRADTMFMHWQKQQQQWESDVLSVMDVVLEQALEQLLTEVPES 112
                  88*****************************************************999888887778888888888664 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.056   1.4e+02       8      33 ..      36      61 ..      34      94 .. 0.79
   2 !   13.7   0.2   2.7e-05     0.069      12      45 ..     100     133 ..      99     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.056
      TPR_19  8 aeAlalleqalqedpknaearllLAe 33
                +eA+++ e++++++ + aea  lL++
  EHT98045.1 36 QEAHQRAEKIISAAEQEAEASSLLVR 61
                67888888888888888887777765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.7e-05
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAe 45 
                 ++leq+l+e p++++++ lL ++ll+  q+d+A 
  EHT98045.1 100 QALEQLLTEVPESQRLQGLLRQLLLEKTQTDKAT 133
                 68******************************95 PP

>> HCV_NS2  Hepatitis C virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05      0.13      90     127 ..     100     136 ..      54     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
     HCV_NS2  90 ylLeasLlrvpylvRaaallrlcvlvrklaggkyvqaa 127
                  +Le++L++vp+  R++ llr ++l  k   +k++  +
  EHT98045.1 100 QALEQLLTEVPESQRLQGLLRQLLL-EKTQTDKATLCC 136
                 689*********************9.777777776555 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.7   7.3e-05      0.19      11      79 ..      26      94 ..      22     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHH CS
  V-ATPase_G 11 qAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeeki 79
                +  ++A+ i++eA +r +k +  A++eAe+     r++ e+ f +   +   + ++ +++ e+++ + +
  EHT98045.1 26 AVQEQARTIIQEAHQRAEKIISAAEQEAEASSLLVRQRAEEAFWKRADTMFMHWQKQQQQWESDVLSVM 94
                55689**************************************99999999898888888888776555 PP

>> Cdh1_DBD_1  Chromodomain helicase DNA-binding domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   8.3e-05      0.21      47     105 ..      27      85 ..      17      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-05
  Cdh1_DBD_1  47 lleeakklvkeeeekrakeleeleadaeeykeklkkgevkadeekkdtpitklaakrre 105
                 + e+a+ +++e  ++ +k+++++e++ae+    +++  ++a  +++dt  ++++ ++++
  EHT98045.1  27 VQEQARTIIQEAHQRAEKIISAAEQEAEASSLLVRQRAEEAFWKRADTMFMHWQKQQQQ 85 
                 6699*************************************************987765 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.7   0.00024      0.61      84     111 ..      28      55 ..      21      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  84 kkeaeliikeAekkaekiveeaeeeakk 111
                 +++a++ii+eA+++aeki++ ae+ea+ 
  EHT98045.1  28 QEQARTIIQEAHQRAEKIISAAEQEAEA 55 
                 7899****************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1581  (0.0881812); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 1720.82
//
Query:       EHT98046.1  [L=55]
Description: HrpD family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 441.41
//
Query:       EHT98047.1  [L=199]
Description: type III secretion system lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-17   63.6   0.0    2.5e-17   63.2   0.0    1.1  1  YscJ_FliF  Secretory protein of YscJ/FliF family


Domain annotation for each model (and alignments):
>> YscJ_FliF  Secretory protein of YscJ/FliF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.4e-21   2.5e-17      57     178 ..       1     120 [.       1     122 [. 0.94

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.4e-21
   YscJ_FliF  57 lVpedqvsearlklaseglpksgssvgf.elfdkkssfgtTdfeeqvkyqralegeLartiesldgVesArVhlalPeksvfvreqkepsAsVvlklkp 154
                 +V+ +++++a   l ++glp+ + +++  e+f+ k+++ +T  ee+++y  al +e+++t++++dgV  ArVh++lPe+    +   ++sA+V++k++p
  EHT98047.1   1 MVDTADLNRAVHILDAAGLPRPT-RTNLgEVFQ-KNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVFIKYRP 97 
                 69999***************887.45555****.999******************************************9999**************** PP

   YscJ_FliF 155 grelseeqvka.IvnlVasaVpglk 178
                 +  l+++ ++  I+++Vas++pgl 
  EHT98047.1  98 E--LDPDVIEPrIRQMVASSLPGLA 120
                 7..******955**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1605.34
//
Query:       EHT98048.1  [L=81]
Description: HrpB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-17   63.6   2.3      2e-17   63.5   2.3    1.0  1  T3SS_basalb_I   Type III secretion basal body protein I, YscI
  ------ inclusion threshold ------
      0.042   14.2   0.3      0.062   13.6   0.3    1.3  1  MT0933_antitox  MT0933-like antitoxin protein


Domain annotation for each model (and alignments):
>> T3SS_basalb_I  Type III secretion basal body protein I, YscI, HrpB, PscI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   2.3   2.3e-21     2e-17      19      96 .]       4      81 .]       1      81 [] 0.95

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 2.3e-21
  T3SS_basalb_I 19 spntlgdallqglsslkegldqameqvqrtlekakdgndpadllkaqmsLsqatlqeeliaKvVgkatQnldkLlklQ 96
                   ++   ++ ++++l  l +  ++ ++q+ r l ka+++ d++++++a+++Ls+++l++ l aK++gk++Q+l+kL++ Q
     EHT98048.1  4 ADVPDNHSWINKLTDLTQAASKESQQADRALAKASRSIDSKSVMDANRTLSSYYLESLLNAKLIGKSVQSLEKLTNIQ 81
                   56677899********************************************************************99 PP

>> MT0933_antitox  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3     7e-06     0.062       6      29 ..      21      44 ..      13      45 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7e-06
  MT0933_antitox  6 dlaekhedkvdqgiDKAgdavddk 29
                    ++a+k ++++d+++ KA   +d+k
      EHT98048.1 21 QAASKESQQADRALAKASRSIDSK 44
                    5799***************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 615.26
//
Query:       EHT98049.1  [L=48]
Description: HrpA family pilus protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 394.38
//
Query:       EHT98050.1  [L=323]
Description: HrpS family type III secretion system transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-57  194.2   0.0    2.4e-57  193.3   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
    1.8e-14   54.1   0.0      5e-14   52.6   0.0    1.8  1  Sigma54_activ_2  Sigma-54 interaction domain
    6.4e-09   35.9   0.0    1.1e-08   35.2   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
    2.8e-08   33.4   0.0    8.1e-08   31.9   0.0    1.8  1  HTH_8            Bacterial regulatory protein, Fis family
    3.8e-06   27.3   0.0    6.4e-06   26.6   0.0    1.4  1  AAA              ATPase family associated with various cellul
      1e-05   25.0   0.0     0.0035   16.7   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    4.2e-05   23.4   0.0    6.9e-05   22.7   0.0    1.3  1  AAA_3            ATPase family associated with various cellul
    0.00015   22.0   0.0    0.00037   20.7   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00084   18.5   0.0     0.0014   17.7   0.0    1.3  1  MCM              MCM P-loop domain
     0.0033   17.4   0.0      0.067   13.1   0.0    2.7  3  HTH_1            Bacterial regulatory helix-turn-helix protei
  ------ inclusion threshold ------
      0.027   14.3   0.0      0.063   13.1   0.0    1.6  1  HTH_23           Homeodomain-like domain
      0.053   13.7   0.0       0.13   12.4   0.0    1.7  1  HTH_28           Helix-turn-helix domain
      0.054   13.3   0.1       0.19   11.6   0.1    1.9  1  HTH_30           PucR C-terminal helix-turn-helix domain
      0.086   12.5   0.0       0.19   11.4   0.0    1.6  1  HTH_50           Helix-turn-helix domain
      0.092   12.8   0.0       0.17   11.9   0.0    1.3  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.29   11.4   1.2        4.9    7.4   0.3    2.9  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.0   2.1e-60   2.4e-57      11     168 .]      34     190 ..      28     190 .. 0.96

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 2.1e-60
                      HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGG CS
  Sigma54_activat  11 lleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeige 104
                      l + i++va+ +++++++Ge+GtGK++lar+ih+ s   +++++avncaaipe+l eseLFG+++Ga+tGA ++++G++e+a++G+lfLDei +
       EHT98050.1  34 LASLIETVAPLEIDLVLEGETGTGKDTLARKIHRLSGC-SGRLIAVNCAAIPETLAESELFGVNNGAYTGAVQARAGYIEEANNGILFLDEIDS 126
                      5678999****************************995.566**************************************************** PP

                      S-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEEE CS
  Sigma54_activat 105 lplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvieie 168
                      +pl+lQ+kLlrvl+++ +er+G+++ i+v++r+i+at++ l + ve+g+fr+dLy+rln+++i+
       EHT98050.1 127 MPLSLQAKLLRVLENRGIERLGGTRFIPVNMRVIVATQKPLLTLVEQGTFRRDLYFRLNTLSIQ 190
                      ************************************************************9985 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   4.5e-17     5e-14      10     138 .]      34     194 ..      29     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 4.5e-17
                      HHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTSEEEEEE-TT CS
  Sigma54_activ_2  10 lkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakggtLylkdiad 80 
                      l++ +e +a  +  + l Ge G+gk++ Ar +h  sg    +  v ++a++p                       +  +e+a++g+L+l +i++
       EHT98050.1  34 LASLIETVAPLEIDLVLEGETGTGKDTLARKIHRLSGCSGRLIAV-NCAAIPetlaeselfgvnngaytgavqarAGYIEEANNGILFLDEIDS 126
                      677789999999999**********************99999888.89999988899999999999999999988889999************* PP

                      --HHHHHHHHHHHHH...........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  81 lskaeqkeLlellak...........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      ++ ++q++Ll +l++             + ++r++ ++ k l  l+e+g f + L+++L  l++++ pL
       EHT98050.1 127 MPLSLQAKLLRVLENrgierlggtrfI-PVNMRVIVATQKPLLTLVEQGTFRRDLYFRLNTLSIQLQPL 194
                      **********************98854.89***********************************9887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   9.8e-12   1.1e-08       1     119 [.      47     163 ..      47     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 9.8e-12
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerrll 95 
                 d++L G++GtgK +la+++ ++ +++   ++ +    +e+l  +  +   + +++  +  ra+     +  il+lDE++ ++ + +++Ll++le+r + 
  EHT98050.1  47 DLVLEGETGTGKDTLARKIHRLSGCSGRLIAVNCAAIPETLAESELFGVNNGAYTGAVQARAGYieeaNNGILFLDEIDSMPLSLQAKLLRVLENRGIE 145
                 689********************776666655555555555444444333334444444444448888889***************************9 PP

                 ..-SSSEEE---......-EEEEE CS
       AAA_5  96 leeggelvkaknddllerfrviat 119
                    g++ + ++         ++at
  EHT98050.1 146 RLGGTRFIPVNM------RVIVAT 163
                 999999888876......344444 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   7.2e-11   8.1e-08       2      40 ..     274     312 ..     273     313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 7.2e-11
                 HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHH CS
       HTH_8   2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLk 40 
                 l+ +Ek lI ++L r+g  + +AA +LG+  rtLy ++k
  EHT98050.1 274 LRRIEKSLIHDCLVRHGHSIDEAAMELGMPLRTLYHRIK 312
                 799**********************************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   5.7e-09   6.4e-06       2     112 ..      49     166 ..      48     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.7e-09
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqL 89 
                 +l G  GtGK +la+ + + +g   +++ ++++ + +            g+    +++    ++e +   ilf+DEid++  s            +++L
  EHT98050.1  49 VLEGETGTGKDTLARKIHRLSGcsGRLIAVNCAAIPETlaeselfgvNNGAYTGAVQARAGYIEEAN-NGILFLDEIDSMPLSL-----------QAKL 135
                 689****************975447788888888776567777444433333344444444445554.7***********7777...........9999 PP

                 HHHHHHTTTS........SSTEEEEEEESSG CS
         AAA  90 lteldgvkkk........eskvivigatnrp 112
                 l++l++   +          ++ vi+at++p
  EHT98050.1 136 LRVLENRGIErlggtrfiPVNMRVIVATQKP 166
                 9999999888888888885558888888875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0054         6      24      45 ..      47      68 ..      31      91 .. 0.85
   2 !   16.7   0.0   3.2e-06    0.0035      93     155 ..     102     162 ..      94     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0054
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsl 45
                  +l+l G  G+GK  la++++ l
    EHT98050.1 47 DLVLEGETGTGKDTLARKIHRL 68
                  799***************9876 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3.2e-06
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaa 155
                   g  +++ G i  a+nG+LfLDE+  +  +    L + le++ +  +r   +   p ++ +++a
    EHT98050.1 102 GAVQARAGYIEEANNGILFLDEIDSMPLSLQAKLLRVLENRGI--ERLGGTRFIPVNMRVIVA 162
                   667999*********************9999999999999875..455555555666666555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   6.1e-08   6.9e-05       2     114 ..      48     168 ..      47     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 6.1e-08
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke....kefefkkGpvf...anllladeinrappktqsalleameerqvtv 93 
                 ++leg  G++k +l++++ +  +++ + i +    +P  +  +e+f  ++      ++ ++G +    + +l+ dei+  p   q+ ll ++e+r +  
  EHT98050.1  48 LVLEGETGTGKDTLARKIHRLSGCSGRLIAVNCAAIPETLAESELFGVNNgaytGAVQARAGYIEeanNGILFLDEIDSMPLSLQAKLLRVLENRGIER 146
                 589*******************************************988855657789999999622246999*************************9 PP

       AAA_3  94 egethklpepf.lvlatqnPie 114
                  g t+ +p ++ +++atq P+ 
  EHT98050.1 147 LGGTRFIPVNMrVIVATQKPLL 168
                 999999997762668*****73 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.3e-07   0.00037       5     110 ..      47     146 ..      44     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.3e-07
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVq 96 
                  + l g+tg+Gk  la+++ +l  +  + +li +++ ++ e           +   +  ++a+ gy++ +++Gi++lDEid                 q
  EHT98050.1  47 DLVLEGETGTGKDTLARKIHRLSGC--SGRLIAVNCAAIPEtlaeselFGVNNGAYTGAVQARAGYIEEANNGILFLDEIDSMPL-----------SLQ 132
                 5678899999999999999999986..7778888887777755322211112334456789999*****************9999...........999 PP

                 HHHHHHHH--EE-- CS
       AAA_2  97 rdLLqileggtltd 110
                   LL++le+  ++ 
  EHT98050.1 133 AKLLRVLENRGIER 146
                 99999999866655 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0014      57     151 ..      45     145 ..      39     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 S-EEEEEESSTSTHHHHHHHHHHHSSSE...EEEES....SSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHS CS
         MCM  57 dinvllvgdpgtaKsqlLkyveklapra...vytsg....kgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqq 148
                 +i+++l g+ gt+K +l +++++l+  +   + ++     ++  +++L   v++   tg +   aG +  a++G++ +De+d m  + + +l+ ++E+ 
  EHT98050.1  45 EIDLVLEGETGTGKDTLARKIHRLSGCSgrlIAVNCaaipETLAESEL-FGVNNGAYTGAVQARAGYIEEANNGILFLDEIDSMPLSLQAKLLRVLENR 142
                 588889999999999999999887654311122222000123333344.347788899999************************************98 PP

                 EEE CS
         MCM 149 tis 151
                  i+
  EHT98050.1 143 GIE 145
                 775 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.3   4.8e+03      10      18 ..     170     178 ..     167     201 .. 0.53
   2 ?    0.4   0.0      0.56   6.3e+02      16      34 ..     209     227 ..     207     229 .. 0.89
   3 !   13.1   0.0     6e-05     0.067       8      38 ..     284     315 ..     282     321 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.3
                 HHHHSSHHH CS
       HTH_1  10 vaeegsftr 18 
                 ++e+g+f+r
  EHT98050.1 170 LVEQGTFRR 178
                 555665553 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.56
                 HHHHHHHHTS-HHHHHHHH CS
       HTH_1  16 ftrAAeeLglsqpavsrqi 34 
                 +++AA  +  ++p +++ +
  EHT98050.1 209 IAKAATTMQCTPPEITQEL 227
                 689**********999865 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 6e-05
                 HHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHH CS
       HTH_1   8 vavaeeg.sftrAAeeLglsqpavsrqikrLE 38 
                 ++++++g s+ +AA eLg+   ++ ++ik L+
  EHT98050.1 284 DCLVRHGhSIDEAAMELGMPLRTLYHRIKLLN 315
                 689**************************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.6e-05     0.063       5      40 ..     274     313 ..     270     318 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.6e-05
      HTH_23   5 reRlr..illllae..GlsvreIAreLgvsrrTvyrwlkr 40 
                 ++R++   ++ +++  G+s+ e+A eLg++ rT+y+ +k 
  EHT98050.1 274 LRRIEksLIHDCLVrhGHSIDEAAMELGMPLRTLYHRIKL 313
                 5666666888899889*******************87775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.13       9      37 ..     287     315 ..     284     316 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      HTH_28   9 laaGhsvreaArelgisrrtvyrWikrye 37 
                 + +Ghs++eaA elg+  rt+y  ik ++
  EHT98050.1 287 VRHGHSIDEAAMELGMPLRTLYHRIKLLN 315
                 56899********************9875 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00017      0.19       7      36 ..     285     314 ..     284     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                 HHHHTTT-HHHHHHHHTS-HHHHHHHHHHH CS
      HTH_30   7 aylenggnisatAkaLhvHrnTlryRLrri 36 
                 + +++g +i+++A +L++   Tl++R++ +
  EHT98050.1 285 CLVRHGHSIDEAAMELGMPLRTLYHRIKLL 314
                 5789***********************865 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.19       3      35 ..     269     302 ..     267     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      HTH_50   3 sLkeyveefErelikkayekYp.StRklAkrLGv 35 
                  Lke++  +E++li + + +++ S+  +A  LG+
  EHT98050.1 269 QLKEILRRIEKSLIHDCLVRHGhSIDEAAMELGM 302
                 69**************999995488899988886 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.17      13      45 ..      33      71 ..      23      79 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
                HHHHCHTEE......EEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 13 klakalgdv......ilLeGdLGaGKTtlvrglakalgv 45
                +la+ +++v      ++LeG+ G+GK tl+r++ +  g+
  EHT98050.1 33 SLASLIETVapleidLVLEGETGTGKDTLARKIHRLSGC 71
                4555443334445569****************9987766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3    0.0044       4.9       8      29 ..      48      69 ..      48     160 .. 0.80
   2 ?   -0.6   0.0       1.3   1.5e+03      70     101 ..     263     297 ..     183     321 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0044
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                lv+ Ge+GtGK tl+r++++  
  EHT98050.1 48 LVLEGETGTGKDTLARKIHRLS 69
                5889************998765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
      AAA_22  70 a..erlsseellealeqalrarav.ielliiDEaq 101
                 a  ++ +++e+l+++e+ l +    ++   iDEa 
  EHT98050.1 263 AerQGPQLKEILRRIEKSLIHDCLvRHGHSIDEAA 297
                 13444555555555555443333335555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2591.71
//
Query:       EHT98051.1  [L=206]
Description: two-component response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-28   99.1   0.1    3.6e-28   98.0   0.0    1.6  2  Response_reg  Response regulator receiver domain
    4.8e-16   58.0   2.5    5.9e-16   57.8   1.5    1.7  2  GerE          Bacterial regulatory proteins, luxR family
     0.0032   16.9   0.1     0.0077   15.7   0.1    1.7  1  Sigma70_r4    Sigma-70, region 4
     0.0036   17.3   0.1      0.007   16.4   0.1    1.5  1  HTH_29        Winged helix-turn helix
     0.0055   16.8   0.1      0.021   14.9   0.0    2.0  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   15.1   0.7       0.13   12.2   0.1    2.3  2  HTH_5         Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   1.2e-31   3.6e-28       2     111 ..       1     111 [.       1     112 [. 0.98
   2 ?   -2.2   0.0       1.5   4.5e+03      12      32 ..     139     159 ..     129     172 .. 0.52

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 1.2e-31
                   EEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +ivdD+ ++re+l+q++  +e + +v ea +g++++e l++e+vdl+llD+ mpg+ G el+++i+   p+lp++ilt++se + a ++lk+ga ++
    EHT98051.1   1 MIVDDHVIMREGLKQIFSlDERLVVVSEAGNGTQVMEGLRNEQVDLLLLDMCMPGLCGEELISRIHSLYPQLPILILTMYSEPQIARRVLKCGALGY 97 
                   69****************999998999********************************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++K+ dpe Ll+a+
    EHT98051.1  98 ITKDNDPETLLAAI 111
                   ***********998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                   HHHHHHHHHTTEEEEEEESSH CS
  Response_reg  12 ellrqlleeegyeevaeaedg 32 
                   e+l+q+l+ ++++   + + g
    EHT98051.1 139 EGLHQQLTAREMQIMLKLARG 159
                   455555554444333344433 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   6.2e+03      14      23 ..      35      44 ..      34      44 .. 0.81
   2 !   57.8   1.5     2e-19   5.9e-16       2      57 .]     144     199 ..     143     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                HCTTS-HHHH CS
        GerE 14 laeGksnkeI 23
                ++eG+ n+++
  EHT98051.1 35 VMEGLRNEQV 44
                6899999985 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 2e-19
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L+ RE++++  la G+ ++ IAe+l iS+kTV++hk+++m+K+  k  +++v +a
  EHT98051.1 144 QLTAREMQIMLKLARGEGVNSIAEALAISNKTVSTHKARLMEKMMFKTNADIVKYA 199
                 7*********************************************9999999887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.6e-06    0.0077       3      48 ..     143     187 ..     143     188 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
                 HHS-HHHHHH.HHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererev.lelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 ++L++re ++ l+l +geg     I+e l iS  +V+ +++r ++k+
  EHT98051.1 143 QQLTAREMQImLKLARGEG--VNSIAEALAISNKTVSTHKARLMEKM 187
                 68*******9557888***..99*********************997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.3e-06     0.007       3      35 ..     151     182 ..     150     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwlkr 35 
                 q+ l+la+G++ v  iA++l +s +tv +++ r
  EHT98051.1 151 QIMLKLARGEG-VNSIAEALAISNKTVSTHKAR 182
                 89********9.****************99988 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     7e-06     0.021       4      35 ..     151     182 ..     150     184 .. 0.90
   2 ?   -2.8   0.0       2.4   7.3e+03       4      13 ..     194     203 ..     193     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7e-06
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWikr 35 
                 +i++ la+G+ v+ +A++l is  tv+    r
  EHT98051.1 151 QIMLKLARGEGVNSIAEALAISNKTVSTHKAR 182
                 79999*********************987665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
      HTH_28   4 eiikllaaGh 13 
                  i+k+++++h
  EHT98051.1 194 DIVKYAISHH 203
                 7999999987 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.3e-05      0.13       6      39 ..     151     183 ..     149     186 .. 0.85
   2 ?    0.7   0.1      0.17     5e+02      31      36 ..     199     204 ..     194     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                 HHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHH CS
       HTH_5   6 kILklLaegelcvcelaeelglsqstvShHLkkL 39 
                 +I+  La+ge  v  +ae+l +s  tvS H ++L
  EHT98051.1 151 QIMLKLARGEG-VNSIAEALAISNKTVSTHKARL 183
                 78999999984.899***************6655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
                 HHHHHH CS
       HTH_5  31 tvShHL 36 
                 ++ShHL
  EHT98051.1 199 AISHHL 204
                 79***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1649.28
//
Query:       EHT98052.1  [L=485]
Description: nitrate/nitrite sensor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-23   81.1   0.0    2.7e-12   46.9   0.0    2.6  2  PAS_4        PAS fold
    2.6e-19   69.3   2.2    1.5e-10   41.0   0.0    3.5  4  PAS          PAS fold
    6.6e-19   68.1   0.7    5.4e-09   36.2   0.0    3.0  3  PAS_9        PAS domain
    2.3e-15   56.9   1.2    2.3e-15   56.9   1.2    2.1  2  HisKA_3      Histidine kinase
    6.4e-14   51.6   0.8    3.5e-06   26.9   0.0    2.5  2  PAS_8        PAS domain
    2.5e-07   31.2   0.6    1.9e-06   28.3   0.3    2.5  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.3e-05   25.4   0.1    0.00013   22.1   0.0    2.6  2  PAS_3        PAS fold
    0.00016   21.6   0.4    0.00054   19.9   0.0    2.1  2  HATPase_c_2  Histidine kinase-like ATPase domain
     0.0067   16.3   0.0        2.3    8.1   0.0    2.4  2  MEKHLA       MEKHLA domain


Domain annotation for each model (and alignments):
>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   7.6e-11   1.5e-07       4     109 ..      25     131 ..      22     132 .. 0.91
   2 !   46.9   0.0   1.4e-15   2.7e-12       1     107 [.     148     258 ..     148     260 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 7.6e-11
       PAS_4   4 lpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvle..geepiefleelll.pgeerhyelrllPlrdesGevigvl 99 
                 l da++ +d+d  + y+N +a++++g++ +ell++++ ++ pe d +++++ ++rv e  g++p +f+++++   ge   +e++++P+  e+      +
  EHT98052.1  25 LRDAVYLIDSDTCFFYVNDEACRMLGYSNAELLNMRVSDIDPEWDFDDVMDMWKRVREqnGGRPFTFETFHKSsQGEMIAVEISANPFVYEEKS--YSM 121
                 6799***********************************99999************875589*************************9665555..899 PP

       PAS_4 100 visrDiTerr 109
                 +++ Di er+
  EHT98052.1 122 CVVKDIRERK 131
                 9999999987 PP

  == domain 2  score: 46.9 bits;  conditional E-value: 1.4e-15
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpee.daarleralrrvlegeepiefleelll...pgeerhyelrllPlrdesGev 95 
                 ++++pd+++ ++pd++++yaN+aa +++++++eel+G+tl+++  +  + + +er l++v+  +  +e + +  +     ++ ++ +r++P ++ +G  
  EHT98052.1 148 VENSPDMVVRFSPDLKCQYANPAALRHLRLSFEELRGRTLRDIQGDLpCVRHIERFLKEVVNRKIEAEGELVESDsslTSGTMIIHTRCVPEFNQNGNL 246
                 69****************************************987779***************97777777777799999999999************* PP

       PAS_4  96 igvlvisrDiTe 107
                   v++++rDiT+
  EHT98052.1 247 TSVMLVGRDITA 258
                 ***********7 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   7.7e-14   1.5e-10       4     113 .]      19     127 ..      16     127 .. 0.83
   2 !   26.3   0.0   2.8e-09   5.6e-06       2     113 .]     143     256 ..     142     256 .. 0.82
   3 ?   -2.9   0.2       3.4   6.9e+03      58      81 ..     269     292 ..     261     301 .. 0.61
   4 ?   -2.6   0.0       2.7   5.4e+03      14      14 ..     429     429 ..     389     455 .. 0.60

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 7.7e-14
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC....TTSSEEEEEEEEEEEEE CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl....rdgrpihlevraspvrd 98 
                 +  ++ l+d++ ++D d++++yvN++a+++lG+s  e+l+  ++d  +e d  +++  ++++ ++++ +r    +f++     +g+ i +e+ a+p++ 
  EHT98052.1  19 EFAMNMLRDAVYLIDSDTCFFYVNDEACRMLGYSNAELLNMRVSDIDPEWD-FDDVMDMWKRVREQNGGRP--FTFETfhksSQGEMIAVEISANPFVY 114
                 5677889*************************************5555544.3466666666666666666..555666689***************** PP

                 TTEEEEEEEEEEEES CS
         PAS  99 aggeilgflgvlrdi 113
                 +++   + ++v++di
  EHT98052.1 115 EEKS--YSMCVVKDI 127
                 *997..*******98 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 2.8e-09
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH......HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda......elaelleqlleqgeesrageisfklrdgrpihlevras 94 
                 ++r ++e++pd+++    d ++ y+N+aa + l ls ee+ g++l  +i  + +        l+e + + +e+  e    + s++    ++  +++r++
  EHT98052.1 143 EFRVLVENSPDMVVRFSPDLKCQYANPAALRHLRLSFEELRGRTLR-DIQGDLPCvrhierFLKEVVNRKIEAEGELVESDSSLTS---GTMIIHTRCV 237
                 799******************************************9.666665545544445666666666666666666666655...9999****** PP

                 EEEETTEEEEEEEEEEEES CS
         PAS  95 pvrdaggeilgflgvlrdi 113
                 p ++  g+++ +++v+rdi
  EHT98052.1 238 PEFNQNGNLTSVMLVGRDI 256
                 ******************8 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHTT-ECCCCEEEEC CS
         PAS  58 laelleqlleqgeesrageisfkl 81 
                  + +l+ l +q+e sr +e+++  
  EHT98052.1 269 SHMRLRLLTRQREISREEERKRIA 292
                 555666666666666666665544 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.7
                 E CS
         PAS  14 i 14 
                 +
  EHT98052.1 429 V 429
                 2 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.7e-12   5.4e-09       3     104 .]      28     129 ..      26     129 .. 0.87
   2 !   29.1   0.0   4.6e-10   9.2e-07       8     104 .]     159     258 ..     152     258 .. 0.87
   3 ?   -1.6   0.0       1.6   3.3e+03      28      41 ..     366     389 ..     357     442 .. 0.57

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.7e-12
       PAS_9   3 gilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk....kerevevvlirkngetfwvlltaspvkdddgelvgiiv 97 
                 ++ ++++d    y+N+ a+r+lGys +e+l+ +++d+   ++ + +++ +++++ r+     ++++e+ +  + ge + v+++a p+  +++ + +  +
  EHT98052.1  28 AVYLIDSDTCFFYVNDEACRMLGYSNAELLNMRVSDID--PEWDFDDVMDMWKRVREqnggRPFTFETFHKSSQGEMIAVEISANPFVYEEKSYSM--C 122
                 555556888799*************************9..666666666666666666669***********************************..* PP

       PAS_9  98 ilrDite 104
                 +++Di e
  EHT98052.1 123 VVKDIRE 129
                 *****86 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 4.6e-10
       PAS_9   8 npdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk..kerevevvlirkng..etfwvlltaspvkdddgelvgiivilrDi 102
                  pd +  yaN+aalr l  s+ee+ g+ ++d++ +d    + ++++l++  +  +e e+e+v+ +++   +t+ ++ +++p ++++g+l+++ ++ rDi
  EHT98052.1 159 SPDLKCQYANPAALRHLRLSFEELRGRTLRDIQ-GDLPCVRHIERFLKEVVNrkIEAEGELVESDSSLtsGTMIIHTRCVPEFNQNGNLTSVMLVGRDI 256
                 4888778**************************.99999999999999999977677777777776657799999************************ PP

       PAS_9 103 te 104
                 t+
  EHT98052.1 257 TA 258
                 95 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.6
       PAS_9  28 peevlgksitdlf..........v 41 
                 ++e+++++i + +           
  EHT98052.1 366 RDEFINRHIGCQCqliapenevrL 389
                 678888887777655433222221 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   1.2   1.1e-18   2.3e-15       1      67 [.     287     353 ..     287     354 .. 0.98
   2 ?   -2.6   0.0       4.3   8.6e+03      37      44 ..     400     407 ..     376     415 .. 0.49

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.1e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpaa 67 
                 ER+riARE+HD++gq+L+++++ +++++ ++ kd++ + e++  +  l ++++q vR++ ++Lrp +
  EHT98052.1 287 ERKRIAREIHDELGQHLTSLRMGISMLRIQFSKDNPLLHERIVHLMGLTDKTIQVVRNVATRLRPNV 353
                 9***************************************************************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.3
                 HHHHHHHH CS
     HisKA_3  37 kaaeqlre 44 
                  a+e l++
  EHT98052.1 400 VAQESLTN 407
                 33333433 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2     4e-08     8e-05       7      55 ..      22      71 ..      16      84 .. 0.72
   2 !   26.9   0.0   1.8e-09   3.5e-06       3      64 ..     144     205 ..     142     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4e-08
       PAS_8  7 fesspdgiavvdlgdrivdvNqaalellGys.adlkgellgqllpvlrpl 55
                ++ ++d++ ++d ++ + +vN+ a+++lGys a+l+ + + ++ p+ +  
  EHT98052.1 22 MNMLRDAVYLIDSDTCFFYVNDEACRMLGYSnAELLNMRVSDIDPEWDFD 71
                67789*******5552777************9999998886444444333 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.8e-09
       PAS_8   3 lralfesspdgiavvdlgdrivdvNqaalellGys.adlkgellgqllpvlrplledaeqlld 64 
                 +r l+e+spd ++ +  + ++ ++N+aal+ l +s ++l+g +l +++++  p+ +++e++l+
  EHT98052.1 144 FRVLVENSPDMVVRFSPDLKCQYANPAALRHLRLSfEELRGRTL-RDIQGDLPCVRHIERFLK 205
                 899**********9876679*********************999.777777777777777764 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.8   9.5e+03      24      63 ..     268     305 ..     258     319 .. 0.67
   2 !   28.3   0.3   9.7e-10   1.9e-06       6     110 ..     397     483 ..     392     485 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.8
                 TTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH CS
   HATPase_c  24 ageieveikaseddlvisveDnGiGipkedlkklfekfsq 63 
                 +++ ++++     + +is e   + i +e++++l++++++
  EHT98052.1 268 DSHMRLRLL--TRQREISREEERKRIAREIHDELGQHLTS 305
                 555555555..33677777777778888888877766554 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 9.7e-10
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttf 104
                   ++ ++ ++N  ++ ++a+e+ +e+ ++   +v++v+DnG+G + ++ k                  + +Gl+ +k+  +++gG+++v+s+p  Gt++
  EHT98052.1 397 AFRVAQESLTNISRH-AQANEVLIEVIRKPHLIVLTVSDNGRGFDCNQSK-----------------DNAFGLMGMKERGRMIGGKVEVKSQPANGTRV 477
                 568899*********.99*********76689999*********997777.................789********9999***************** PP

                 EEEEES CS
   HATPase_c 105 tftlpl 110
                 t+t+pl
  EHT98052.1 478 TLTIPL 483
                 ***997 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   6.8e-08   0.00013       2      79 ..      39     117 ..      38     125 .. 0.87
   2 ?    0.0   0.0      0.54   1.1e+03      65      81 ..     229     245 ..     174     252 .. 0.56

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.8e-08
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqeal..kkgepyegeyRirrkdGeyrwveararvi.rden 79 
                  yv+++ +++lGys +ell+   ++ d+    D + v++ ++++   ++g+p+++e   +  +Ge++ ve +a+++ + e+
  EHT98052.1  39 FYVNDEACRMLGYSNAELLNM--RVSDIDPEWDFDDVMDMWKRVReqNGGRPFTFETFHKSSQGEMIAVEISANPFvYEEK 117
                 69*******************..*******************999755666**999988888**************44443 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.54
       PAS_3  65 yrwveararvirdengk 81 
                 ++ +++r+++ +++ng+
  EHT98052.1 229 TMIIHTRCVPEFNQNGN 245
                 34555556665555555 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.8   5.6e+03      43      66 ..     258     281 ..     257     297 .. 0.76
   2 !   19.9   0.0   2.7e-07   0.00054      34      98 ..     399     457 ..     378     480 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.8
  HATPase_c_2  43 avehayleapegpvevrlesdeea 66 
                  a+++a ++ ++ ++++rl  ++++
   EHT98052.1 258 AIHYAEKKLEDSHMRLRLLTRQRE 281
                  789999999999999996555544 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.7e-07
  HATPase_c_2  34 laveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkeg 98 
                   +++E +tN+ +ha+      +v +++ +++  ++++v+D+G+gfd  + +d++        ke+
   EHT98052.1 399 RVAQESLTNISRHAQA----NEVLIEVIRKPHLIVLTVSDNGRGFDCNQSKDNAFGL--MGMKER 457
                  4679***********8....67888888********************999987744..344444 PP

>> MEKHLA  MEKHLA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0064        13      46      76 ..      33      63 ..      21     102 .. 0.89
   2 !    8.1   0.0    0.0012       2.3      26      79 ..     140     192 ..     116     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0064
      MEKHLA 46 kadpvfnyaNqaaldllettweeltdlpsrk 76
                ++d  f y N +a ++l ++ +el ++ +  
  EHT98052.1 33 DSDTCFFYVNDEACRMLGYSNAELLNMRVSD 63
                67899********************998765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
      MEKHLA  26 aeelakaLfe.apfavlshslkadpvfnyaNqaaldllettweeltdlpsrksae 79 
                 +e+  + L e  p++v+ +s  +d    yaN aal+ l +++eel   ++r +  
  EHT98052.1 140 REQEFRVLVEnSPDMVVRFS--PDLKCQYANPAALRHLRLSFEELRGRTLRDIQG 192
                 45555555554667776555..777899******************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.34
# Mc/sec: 4230.97
//
Query:       EHT98053.1  [L=128]
Description: sigma factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-12   44.8   0.1    1.1e-11   44.2   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    4.3e-08   32.6   0.1    6.9e-08   31.9   0.1    1.4  1  Sigma70_r4    Sigma-70, region 4
    7.8e-06   25.6   0.2    1.2e-05   25.0   0.2    1.3  1  Sigma70_r2    Sigma-70 region 2
    0.00014   21.9   0.0    0.00018   21.5   0.0    1.3  1  DUF2089       Protein of unknown function (DUF2089)
    0.00036   20.3   0.0    0.00061   19.5   0.0    1.4  1  HTH_30        PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   14.9   0.1      0.032   13.8   0.1    1.6  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.018   15.6   0.0      0.033   14.8   0.0    1.5  1  ING           Inhibitor of growth proteins N-terminal histone
       0.11   12.4   0.0       0.38   10.6   0.0    1.9  2  HTH_23        Homeodomain-like domain
       0.14   12.3   0.0       0.24   11.5   0.0    1.4  1  Clp_N         Clp amino terminal domain, pathogenicity island


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.1   5.4e-15   1.1e-11       6      53 ..      74     121 ..      61     122 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 5.4e-15
                   HHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2   6 ealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkk 53 
                   + +a Lp++ r+ + +  +e+ sy+ IA+ l+i++gtV+srlsR r  
    EHT98053.1  74 QSIALLPKETRKLLSMLVEEDGSYQNIAKSLNIPVGTVRSRLSRTRVS 121
                   67999***************************************9965 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   3.4e-11   6.9e-08       3      50 .]      77     124 ..      75     124 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.4e-11
                 HHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 a Lp + r+ l++  +e+ +++ I++ l+i+ ++Vr++++r++  L++
  EHT98053.1  77 ALLPKETRKLLSMLVEEDGSYQNIAKSLNIPVGTVRSRLSRTRVSLKQ 124
                 6799**************************************999985 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   5.8e-09   1.2e-05      30      70 ..       2      40 ..       1      41 [. 0.95

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5.8e-09
                HHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2 30 aflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                ++l ++r++++f  + + ++++w++ ia n++ +++R++++
  EHT98053.1  2 TWLEVIRNRDKFA-GAS-RPETWVFGIALNLIRNHFRSQSS 40
                89***********.999.********************986 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     9e-08   0.00018      28      78 ..      73     123 ..      31     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9e-08
     DUF2089  28 lsefarLskeqlefvelfikarGnlkevekelgisYpTvrnrldeileaLg 78 
                 l+++a L ke+ +++ ++++  G+ ++++k+l+i   Tvr+rl +   +L+
  EHT98053.1  73 LQSIALLPKETRKLLSMLVEEDGSYQNIAKSLNIPVGTVRSRLSRTRVSLK 123
                 788999*************************************98776665 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.1e-07   0.00061       4      37 ..      86     119 ..      83     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.1e-07
                 HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_30   4 TLraylenggnisatAkaLhvHrnTlryRLrrie 37 
                  L + +e++g+++  Ak+L++ + T+r RL r +
  EHT98053.1  86 LLSMLVEEDGSYQNIAKSLNIPVGTVRSRLSRTR 119
                 689999*************************976 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.6e-05     0.032      19      40 ..      96     117 ..      83     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
      HTH_24  19 sqreLAerlglSpstvnrrlkr 40 
                 s++ +A+ l+++++tv+ rl r
  EHT98053.1  96 SYQNIAKSLNIPVGTVRSRLSR 117
                 8999***************987 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.6e-05     0.033       3      38 ..      70     105 ..      68     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                 HHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING   3 edyldsvenLPlelqrnltelreiDakvqellkeid 38 
                   +l+s+  LP+e++++l+ l e D ++q++ k+++
  EHT98053.1  70 GSTLQSIALLPKETRKLLSMLVEEDGSYQNIAKSLN 105
                 5689***************************99986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.3e+03       8      22 ..       4      20 ..       2      21 .. 0.80
   2 ?   10.6   0.0   0.00019      0.38      13      40 ..      89     117 ..      80     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
      HTH_23  8 lrillllae..Glsvre 22
                l++++  ++  G+s++e
  EHT98053.1  4 LEVIRNRDKfaGASRPE 20
                67889999888999887 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00019
      HTH_23  13 llae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 +l e   s++ IA+ L+++  Tv+  l+r
  EHT98053.1  89 MLVEeDGSYQNIAKSLNIPVGTVRSRLSR 117
                 4444467*****************77776 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.24      19      49 ..      86     116 ..      86     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 HHHHHHSCTSHHHHHHHHTTSSHHHHHHHHH CS
       Clp_N  19 LlALleeddGlaarlLkkaGvdldalrkaie 49 
                 Ll++l e+dG  +++ k +++ + ++r+ + 
  EHT98053.1  86 LLSMLVEEDGSYQNIAKSLNIPVGTVRSRLS 116
                 89*************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 973.43
//
Query:       EHT98054.1  [L=388]
Description: HrcJ family type III secretion system component protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-48  165.4   5.7    2.7e-48  164.4   5.7    1.4  1  HrpJ      HrpJ-like domain
    0.00028   20.9   0.0     0.0027   17.8   0.0    2.4  2  TyeA      TyeA


Domain annotation for each model (and alignments):
>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   5.7     3e-52   2.7e-48       1     166 []      57     226 ..      57     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 3e-52
                 XXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXHHHHHHCT-TT-HHHHHHHHS-TT..--HHHHHHHHHHH--SHHHHHHHHHHHHHH.S CS
        HrpJ   1 afaetseekskaLaqrkr.......sdakkseaekleelldllekvldleaeeklkeLrkllksgqlsssaqllalleslfgDpsdqllaLrallrk.g 91 
                 +fae++e+k kaL+qrk+       s+++++++ekl+el++lle+++++++e++++++++ll   q+s +++l+all+ +++Dp+ ++++Lr+ + k +
  EHT98054.1  57 TFAEHVERKNKALNQRKVvaqpgskSTQHIERIEKLYELMKLLEHPQHAQLETQNQKMQTLL---QRSPAPDLDALLDVAGKDPALCDVLLRHTMIKgQ 152
                 69************************************************************...99******************************** PP

                 -GGGHHHHHHHHHHHHHHHHHHTHHHHHHHCTHHHHHHHHCCCTS-HHHHHHHHHHHHTS---HHHHHHHHHCCS CS
        HrpJ  92 rplsaelkelleqaleeLeqekgkeiraGiNialaaklfsqtdqlslqaLRdlYrqavsddqslsalyeallerf 166
                 + +++  +e+ ++++e+L+++kg+e++aG+N+a+a+++fs td+l++qaLR+lY++++++ qs +a+++all+rf
  EHT98054.1 153 QTQNTLIVERSRHSIEQLHEKKGAEVNAGLNTAHAIASFS-TDPLQKQALRHLYYETIVHLQSGNAMLDALLNRF 226
                 ****************************************.********************************98 PP

>> TyeA  TyeA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.15   1.3e+03      36      50 ..     228     242 ..     219     247 .. 0.87
   2 !   17.8   0.0     3e-07    0.0027       3      65 ..     299     360 ..     297     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.15
                 --HHHHHH--TGGGS CS
        TyeA  36 qilFlrelkellrel 50 
                  + F+++l++l r+l
  EHT98054.1 228 SVNFIQGLRTLQRAL 242
                 699********9986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3e-07
                 HHHHHHHHHH-----HHHHHHHHHCT--SSTTT--HHHHHH--TGGGS-GGGSS-HHHHHHHH CS
        TyeA   3 LmrdlvaLkeekwvgpseiekiaeqlgvpaiekqilFlrelkellrelPlkvFadeeqRqklL 65 
                 L+r+l++L+ +  +  ++++++   +  + +++q+lFl +l  ll +lP++v++++ + ++ L
  EHT98054.1 299 LTRRLLNLSGN-GAYLRDLQNLTRDVAGQHPQHQVLFLSGLVPLLSHLPMGVWREDRNKNRHL 360
                 55666666543.3556889999999999**************************998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2878.16
//
Query:       EHT98055.1  [L=717]
Description: type III secretion system inner membrane channel protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-207  689.9   1.2   4.2e-207  689.7   1.2    1.0  1  FHIPEP    FHIPEP family
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.12   12.4   0.1    3.0  3  DUF454    Protein of unknown function (DUF454)
        8.6    6.0   9.3       0.21   11.2   0.1    2.6  3  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  689.7   1.2    7e-211  4.2e-207       1     657 [.      30     689 ..      30     690 .. 0.91

  Alignments for each domain:
  == domain 1  score: 689.7 bits;  conditional E-value: 7e-211
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP   1 ivlmlilPlptlllDlllalnialsvlillvalyikkpldfsvFPtlLLittlfrLaLnvastrliLlegeegaGkvieaFgefvvggnlvvGlvvFli 99 
                 iv+m+i+Plpt l+D+l+alni++s l++++a+y+ kpl fs+FP++LL+tt+frLaL++++tr iLl+++  aG+++eaFg+fvvggnl+vGlv+Fli
  EHT98055.1  30 IVFMMIIPLPTSLIDVLIALNICISSLLIVLAMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQD--AGHIVEAFGNFVVGGNLAVGLVIFLI 126
                 89*********************************************************************..************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 100 lvivqfvVitkGaeRvaEVaARFtLDamPGKqmaIDadlnaGlideeeArerreelereadfyGamDGAsKFvkGDaiagliitliniigGliiGvlqh 198
                 l++v+f+VitkG+eRvaEVaARFtLDamPGKqm+ID+dl+aGli++++Ar+rre+l++e++++GamDGA+KFvkGDaiagl+i++in++gG++iGvlq+
  EHT98055.1 127 LTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMLGGFAIGVLQN 225
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 199 gmslsealetYtlLtiGDGLvsqiPaLlisvaagiivtrva.....seenlgeeivkqllanpkalliaagvllllalvpglpklvflllaallallay 292
                 gm++s a++ Y++LtiGDGL++qiPaLlis++ag+i+trv+      ++n+g+ei++ql+++pka++++a+ +l +al+pg+p++vf+++++l+++ ++
  EHT98055.1 226 GMDASAAIHIYSVLTIGDGLIAQIPALLISLTAGMIITRVSadgqqVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGMPTAVFIIISLLALGSGL 324
                 ****************************************98764334789******************************************999999 PP

                 XXXXXXXXX.......XXXXXXXXXXXXXX........TS-EEEEE-GGGHHHHHHT.......HHHHHHHHHHHHHSS---SEEEEE-TT--TTEEEE CS
      FHIPEP 293 llkkkkkkeekeeekeeeeeeaeeeeeeeeeeveellkvdplelelgyeliplvdeeqggeLlerikalrkqlaeelGlvvpeirirdnlelkpneyri 391
                 ++  ++k+++ ++e+++ + ++ + ee+  +++ +   ++ + l++++        e+ ++L+++i++lr++l+ ++G+++p   i+ + +l+++e+r+
  EHT98055.1 325 FQLWRSKHNRIRQEADQLHLQQLAPEENGYQDLRRFNPTRAFLLQFSQVHQG---GEAATTLIREIRRLRNRLVYRFGFTLPGFDIEFSPRLAEDEFRF 420
                 8887774443333333333322222222225555555566666666554333...334578************************************** PP

                 EETTEEEEEEE--TTSEEET.................--EEEEETTE...EEEEE-HHHHHHHHTTT--EEEHHHHHHHHHHHHHHHCHHHCHCHHHHH CS
      FHIPEP 392 kikgvevaegelkpdkllalnpgevee..........legeetkepafglpavwieeeqreeaeaagytvvdpssvlathlsevikrhaaellgrqevk 480
                  + ++++ ++++ +  + + +++ + +          ++ ++   +  +++ +w+++++   +++ +++++ + ++++ ++++ i++++a+++g qe k
  EHT98055.1 421 CVYEIPLVTATFGIPFVAVRKSDVD-AshgedhdeadIQLKPGIADRNEAHYCWLSPDHP-LLQKDEMRYWAAGQLIMLRMEQAIHQSCAQFIGLQESK 517
                 *********9999887766654322.1133445667788888888899999****99865.78999********************************* PP

                 HHHHHHHTTHHHHHHHHH.HHS-HHHHHHHHHHHHCTTXXXXXHHHHHHHHHHHTTTXXSHHHHHHHHHHHTHHHHHHHHH.TTSXEEEEEEXHHHHHH CS
      FHIPEP 481 klldelkkeapklveelvpkllslgelqkvLqnLlkErvsirdlrtIletlaeaakktkdvellteavRqaLkrqivqklaeedgelkvitldpeleqa 579
                 ++l  l++e+p+l +el+ ++++l+++++vLq+L +Er+++r +rtI+etl+e++++++d ++lt+ vR aLk++i++++++  + l+v++l++e+e+ 
  EHT98055.1 518 SILTWLESEQPELAQELQ-RIMPLSRFASVLQRLASERIPLRSVRTIAETLVEHGQHERDSAALTDLVRIALKEHICHQYLQ-PNGLNVWLLTSETEEL 614
                 *****************9.**************************************************************7.6789************ PP

                 HHHHEEESSSE..EEXXXHHHHHHHHHHHHHHH.CXXSXGGGXEEEEXCCCHHHHHHHHCTTXTTXEEEETCCCTTXS CS
      FHIPEP 580 laeslkqsegegsalalepelaeklleklkeavekleekgekpvllvspevRrllrkllerelpelaVlsynEieeev 657
                 l++sl+q++ ++++++l ++   +ll+++++a+      + ++++lv++++R+ lr ll++e++ ++V+s++E++++v
  EHT98055.1 615 LRDSLRQAQ-NETFFSLAQDYGISLLHQMRDAFPP--YDTPQALILVAQDLRSPLRALLKDEFHAVPVISFAELTSNV 689
                 *******87.558********************55..667889999****************************9986 PP

>> DUF454  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   3.8      0.15   8.9e+02      66     110 ..      15      58 ..       4      66 .. 0.49
   2 ?   -3.1   0.0       1.3   7.7e+03      28      42 ..     123     140 ..     114     144 .. 0.58
   3 ?   12.4   0.1     2e-05      0.12       8      37 ..     290     320 ..     287     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
      DUF454  66 aitlkaKvialllmllsllislllveslwvkillalvllvvllyi 110
                 a+++++ v a+++m++++++++ l ++ ++ +l+al +++ +l+i
  EHT98055.1  15 AMQRSEVVGATIVMSIVFMMIIPL-PTSLIDVLIALNICISSLLI 58 
                 455555556666666655555555.23333333333333333322 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
      DUF454  28 pFlLlAafcf...arssp 42 
                  Fl+l+++ f   +++s+
  EHT98055.1 123 IFLILTVVNFlviTKGSE 140
                 566666654422245555 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 2e-05
      DUF454   8 GllslalGviG.ivlPlLPTtpFlLlAafcf 37 
                 ++++ a G++G ++lP++PT +F+++++ + 
  EHT98055.1 290 AWIMSAAGMLGfALLPGMPTAVFIIISLLAL 320
                 6899999****5579**********998654 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   2.7      0.47   2.8e+03      12      51 ..      51      88 ..      41     137 .. 0.70
   2 ?   -3.0   0.0       0.8   4.8e+03      33      58 ..     204     229 ..     196     250 .. 0.80
   3 ?   11.2   0.1   3.5e-05      0.21       4     100 ..     287     378 ..     284     386 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.47
     DUF4131 12 lllllllllllllrrrprrrvllllllllllallgfalra 51
                +++  ll+ l+ +   p++  + ++  +lll +++ ++ +
  EHT98055.1 51 ICISSLLIVLAMY--LPKPLAFSTFPSVLLLTTMFRLALS 88
                3333333333333..6888888888888888777655544 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.8
     DUF4131  33 llllllllllallgfalrapqpnand 58 
                 +++l ++++ +l+gfa+ ++q++ + 
  EHT98055.1 204 IAGLVIVFINMLGGFAIGVLQNGMDA 229
                 67788999999999999999988765 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 3.5e-05
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvaslpeltgsgtrfvlevervlsagk 100
                 +++++++ ++++l ++ll          v+++++ll+l  +l+ ++r+ ++  ++ +++l+++q    e   ++l + ++ ++ f l+ ++v+++g+
  EHT98055.1 287 QPKAWIMSAAGMLGFALLP----GMPTAVFIIISLLALGSGLFQLWRSKHNRIRQEADQLHLQQLAPEENGYQDLRRFNPTRA-FLLQFSQVHQGGE 378
                 5789999999999999999....467888888888888888888899999999999999997666555555555555555554.7777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5192.54
//
Query:       EHT98056.1  [L=311]
Description: type III secretion system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-18   64.6   0.0    9.5e-17   61.1   0.0    2.3  2  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
     0.0021   18.4   0.0      0.031   14.6   0.0    2.4  2  FHA           FHA domain
     0.0055   16.2   0.1     0.0081   15.6   0.1    1.1  1  Yop-YscD_ppl  Inner membrane component of T3SS, periplasmic d


Domain annotation for each model (and alignments):
>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   1.6e-20   9.5e-17       1      91 [.       5      95 ..       5      96 .. 0.88
   2 ?    0.7   0.0      0.11   6.5e+02      38      53 ..     203     218 ..     196     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 1.6e-20
                  EEECCCCTT-EEEETTEEEEEES-TT-SEE---TTS-TT-EEEEEETTEEEEEE-CESS--E..ETTEE-SECC.--TTSEEEETTEEEEEEEC CS
  Yop-YscD_cpl  1 rvlsGpdkGaeveLeegevviGsdedcDivLsDkevsrkhlkLeveeesvrledlgsrngll..vngerveele.lrpgdvlelGttelalvke 91
                  rvl+G ++Ga+++L+++++ iG+de +D+ L D++++++h++L  + +++ ++   + +g +   +g+r e l+ l+pg+++++G ++l +v++
    EHT98056.1  5 RVLTGLHRGAALPLSGDKWWIGADEHADLALYDPGIKDRHCQLVKTPQGWEVK---ASDGPVkdNEGQRCEALSnLQPGTAFAVGHIWLSIVDA 95
                  79***************************************************...4455541155677776668**************99986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
                   TT-EEEEEETTEEEEE CS
  Yop-YscD_cpl  38 rkhlkLeveeesvrle 53 
                   +kh++L+ +++sv+l+
    EHT98056.1 203 NKHVSLTSDNQSVTLS 218
                   479**********998 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.1e-06     0.031       1      37 [.      23      57 ..      23      70 .. 0.92
   2 ?    0.8   0.0      0.11   6.5e+02      19      38 ..     266     284 ..     252     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                EEEESSTTSSEETTSTTSTTTEEEEEEETTCEEEEEE CS
         FHA  1 vtiGRssdcdivlddpsiSrkHalikfdkgsgkvyle 37
                + iG ++ +d+ l dp i  +H++++ +++  +++++
  EHT98056.1 23 WWIGADEHADLALYDPGIKDRHCQLVKTPQ--GWEVK 57
                68999*************************..88886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
                 TTTEEEEEEETTCEEEEEEE CS
         FHA  19 SrkHalikfdkgsgkvyleD 38 
                 S  Ha i+ d+g +++++ D
  EHT98056.1 266 SGAHANIVTDSG-QRIFIGD 284
                 889****99999.7888766 PP

>> Yop-YscD_ppl  Inner membrane component of T3SS, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.4e-06    0.0081     131     244 ..     193     302 ..     183     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
  Yop-YscD_ppl 131 ldellekaeldkkltlktkgdrielrGqlddekttrfyrlqqvfrqefGnkPklvlvnvkklskndelnfevravslGkvPyvvlknnlrypvGart 227
                   +  +l + +l+k++ l++ ++ + l G + de+ +r++r+ +++ +++  +  l + n  +     +l f++  ++ G    +v +  +r  +G  +
    EHT98056.1 193 IASMLLDRGLNKHVSLTSDNQSVTLSGGVTDEENQRLQRMLKTLYRHYDVR--LPIHNHVGA-ASVKLPFNIVQITSGAHANIVTDSGQRIFIGDEV 286
                   56778889****************************999999999999765..556665554.4678****************************99 PP

  Yop-YscD_ppl 228 enGlrieairrdaivvv 244
                   ++ lr+ ai+ d+i+ +
    EHT98056.1 287 DQ-LRLVAINSDSIEFA 302
                   87.99********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2326.70
//
Query:       EHT98057.1  [L=454]
Description: type III secretion system cytoplasmic ATP synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-71  239.7   0.0    3.2e-71  239.4   0.0    1.1  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    9.1e-21   73.5   0.0    1.7e-20   72.6   0.0    1.5  1  T3SS_ATPase_C    T3SS EscN ATPase C-terminal domain
     0.0012   19.4   0.1     0.0038   17.7   0.0    1.9  2  ATP-synt_ab_N    ATP synthase alpha/beta family, beta-barrel 
     0.0077   16.2   0.0      0.012   15.5   0.0    1.2  1  ATPase_2         ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.056   14.0   0.0    1.8  2  AAA_18           AAA domain
      0.018   15.4   2.7      0.051   14.0   1.6    2.2  2  AAA_16           AAA ATPase domain
      0.018   15.3   0.0      0.035   14.3   0.0    1.4  1  AAA_28           AAA domain
      0.022   15.3   0.0      0.046   14.2   0.0    1.5  1  ABC_tran         ABC transporter
      0.026   14.8   0.0      0.056   13.7   0.0    1.5  1  AAA_22           AAA domain
      0.035   14.0   0.6       0.84    9.5   0.2    3.0  2  NACHT            NACHT domain
      0.036   13.8   0.0      0.076   12.7   0.0    1.5  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.041   13.5   1.9        1.7    8.2   1.9    2.5  1  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.0   2.2e-74   3.2e-71       1     213 []     160     369 ..     160     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 2.2e-74
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlAE 98 
                  G+r++D l++i++Gqr+++++++g+Gkt+++++l+++s  d +i++ +iGerg+e++e+l++  ++t+ krt+l+++ts+++ ++r ++++t++++AE
   EHT98057.1 160 GLRAIDGLLTIGKGQRVGVFAGAGCGKTTLLAELARNSPCD-VIVFGLIGERGRELREFLDHELDDTLRKRTILLCATSDRSSMERARAAFTATAIAE 256
                  89***********************************9888.******************************************************** PP

                  HHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  99 yfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivLdkk 196
                   fr +gk+vlli+dsl+r+a+A+rei+l+lge+p++ g p+++++ l++l+ERag++  r+G++t+++ v ++++ + dpv++++++++dg+ivL+++
   EHT98057.1 257 AFRAEGKSVLLIIDSLTRFARAQREIGLALGEPPGRGGLPPSVYTLLPRLVERAGQT--RKGAITALYSVLIEQDSMGDPVADEVRSLIDGHIVLSRR 352
                  *********************************************************..99************************************* PP

                  HHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 197 laqrkhfPainvlvSvS 213
                  la+r+h+Pai++l+S+S
   EHT98057.1 353 LAERNHYPAIDILASLS 369
                  ***************98 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   1.2e-23   1.7e-20       1      72 []     376     447 ..     376     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.2e-23
  T3SS_ATPase_C   1 vspehlqaarklrellatyqenedLiniGaYkkGsdpelDeAiakrpainafLkQgvdekvsfeetlaqLke 72 
                    v++ hl++++++r l+a+y+++e Li++G+Y++G+d  +D+A+++++ in+fL+Q ++ + +fe +l+qL+e
     EHT98057.1 376 VDQVHLKQVGNIRSLIAAYKQVEVLIRLGEYQPGHDILTDAAVNANDTINHFLRQTMRTPEPFEHILSQLNE 447
                    5778******************************************************************86 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.6e-06    0.0038       1      66 [.      33      94 ..      33      96 .. 0.93
   2 ?   -2.5   0.0       5.2   7.8e+03      34      52 ..     251     269 ..     242     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.6e-06
                   EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEE CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVk 66
                   ++ ++G +++    +g+ +g +++++    e g+ +l ++++++ + +++ ++g  dG+s G+ ++
     EHT98057.1 33 VTGINGILIEC-SLPGARIGDLCLIQRS--E-GDAVLSEIVGFSAEHILLSALGALDGISQGALIT 94
                   68899******.8899899999999999..9.******************************9876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.2
                    TEEEEEEEEEETTEEEEEE CS
  ATP-synt_ab_N  34 tlllgvalnlgedkVrviv 52 
                       +++a + ++ +V++i+
     EHT98057.1 251 ATAIAEAFRAEGKSVLLII 269
                    5568999999999999985 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.2e-06     0.012       9     129 ..     162     274 ..     159     283 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.2e-06
    ATPase_2   9 keleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaie 107
                 + +  +l  ++ + + ++   g+GKt+Ll e++ n+       + ++ l +e+  +l+ef++ e +++  +++++    +++     + +++ +    +
  EHT98057.1 162 RAIDGLLTIGKGQRVGVFAGAGCGKTTLLAELARNSPC----DVIVFGLIGERGRELREFLDHELDDTLRKRTILLCATSDRS----SMERARAAFTAT 252
                 566666666666667778889*************9933....34456677777788888888666666444444333333333....345677778889 PP

    ATPase_2 108 lllekikkkgkkiiiiiDelqk 129
                 ++ e+ + +gk + +iiD l +
  EHT98057.1 253 AIAEAFRAEGKSVLLIIDSLTR 274
                 9*****************9976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.8e-05     0.056       7      86 ..     182     276 ..     176     285 .. 0.71
   2 ?   -2.3   0.0       4.1   6.2e+03      14      30 ..     349     363 ..     337     396 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
      AAA_18   7 pGvGKttlakeLskrlgf...........gvnlrdvakenglllevdpe....aldeskrldedkldklldaleenssaleegknlvidghlael 86 
                 +G+GKttl  eL++   +           g++lr+ + ++   + +       a+++   +++ + +   +a+ e+ +a+++   l+id++    
  EHT98057.1 182 AGCGKTTLLAELARNSPCdvivfgligerGRELREFLDHELDDTLRKRTillcATSDRSSMERARAAFTATAIAEAFRAEGKSVLLIIDSLTRFA 276
                 7***********99867788999999998555555554433333333335555555588888888888888888887778888888***987665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
      AAA_18  14 lakeLskrlgfgvnlrd 30 
                 l+++L++r+  ++  +d
  EHT98057.1 349 LSRRLAERN--HYPAID 363
                 344455544..333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.6   3.4e-05     0.051      32     155 ..     181     284 ..     162     294 .. 0.60
   2 ?   -2.9   0.0       5.3   7.9e+03     114     137 ..     415     438 ..     364     447 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.4e-05
      AAA_16  32 esGvGKsslvrellralekdggif..lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrlla 128
                  +G+GK++l+ el+r    d ++f  + ++ ++l              r e+l  +ld     +  + r+ l+ a+++    ++ e+ r + + +++++
  EHT98057.1 181 GAGCGKTTLLAELARNSPCDVIVFglIGERGREL--------------R-EFLDHELD-----DTLRKRTILLCATSD---RSSMERARAAFTATAIAE 256
                 58************84444422223233333333..............2.22222222.....244445555554444...444444455555555553 PP

      AAA_16 129 llsrderplvlvlDdlqwadeaslql.l 155
                   + +++ ++l++D l ++  a++++ l
  EHT98057.1 257 AFRAEGKSVLLIIDSLTRFARAQREIgL 284
                 3344466699999999999999998844 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.3
      AAA_16 114 aeasrllellkrllallsrderpl 137
                 ++a   +++++++l+++ r+ +p+
  EHT98057.1 415 DAAVNANDTINHFLRQTMRTPEPF 438
                 344566777777775555545555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.4e-05     0.035       7      68 ..     181     246 ..     176     271 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
      AAA_28   7 gestGKTtlleaLaar......gypvvpEaareileeklakgedalpwvedllafaervleeqleeea 68 
                 g ++GKTtll++La++       +  + E +re+ e +  +  d+l++ +++l +a    +  +e+++
  EHT98057.1 181 GAGCGKTTLLAELARNspcdviVFGLIGERGRELREFLDHELDDTLRK-RTILLCATS-DRSSMERAR 246
                 569***********9888854333366999999988888888888887.455555432.222223332 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.1e-05     0.046       6      36 ..     168     198 ..     165     236 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllk 36 
                 l++ +g++v+++   G+GK+tLl+ la+++ 
  EHT98057.1 168 LTIGKGQRVGVFAGAGCGKTTLLAELARNSP 198
                 6899********************9999865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.7e-05     0.056      10     100 ..     178     272 ..     172     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..............erlsseellealeqalraraviel 94 
                 v++ +G+GKTtll++l+++          + +v+ + l ++   ++l++ l ++l++ l +              er++     +a+++a+ra ++ +l
  EHT98057.1 178 VFAGAGCGKTTLLAELARNS---------PCDVIVFGLIGER-GRELREFLDHELDDTLRKrtillcatsdrssmERARAAFTATAIAEAFRAEGKSVL 266
                 56779**************9.........7777777666666.68999999999999888899999999999987777777777999999999999999 PP

      AAA_22  95 liiDEa 100
                 liiD  
  EHT98057.1 267 LIIDSL 272
                 999965 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.5   6.8e+03      16      37 ..       2      22 ..       1      30 [. 0.72
   2 ?    9.5   0.2   0.00056      0.84       9      23 ..     182     196 ..     176     314 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.5
                HHHHHHHHHCTS-SCCCC-SEE CS
       NACHT 16 Llqklalawaegklpqgafklv 37
                 +  l ++++++ l++++ +l 
  EHT98057.1  2 VMDTLSQDLKQWSLNHQQ-RLA 22
                567888999999999986.554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00056
                 TTTCHHHHHHHHHHH CS
       NACHT   9 aGsGKTtLlqklala 23 
                 aG+GKTtLl++la+ 
  EHT98057.1 182 AGCGKTTLLAELARN 196
                 9*********99864 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-05     0.076       5      23 ..     180     199 ..     177     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
  Viral_helicase1   5 GvpGcGKStlirkllrts.l 23 
                      + +GcGK+tl+ +l+r+s +
       EHT98057.1 180 AGAGCGKTTLLAELARNSpC 199
                      679************99552 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.9    0.0011       1.7      30     157 ..     170     278 ..     141     282 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlg.pvapeqgkVl..yvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtl 125
                 + +g  + +++  g+GKttl+ +la     +  ++g +   e+g+ l  +++ E +  +lr+R   ++++ ++ +                 ++r  ++
  EHT98057.1 170 IGKGQRVGVFAGAGCGKTTLLAELARNSPCDVIVFGlI--GERGRELreFLDHELDD-TLRKRTILLCATSDRSS-----------------MERARAA 248
                 45677777788889999999999987766555555531..22333222234444443.44444444444421111.................2222223 PP

      AAA_25 126 ltadvdaleaaieeveg.vrlvviDplsralgg 157
                  ta   a+++a ++ eg  +l++iD+l+r+ ++
  EHT98057.1 249 FTAT--AIAEAFRA-EGkSVLLIIDSLTRFARA 278
                 3333..36677777.555889999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3579.61
//
Query:       EHT98058.1  [L=146]
Description: HrpO family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        1.8    8.5  10.5        2.1    8.3  10.5    1.1  1  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb
          6    7.5   8.4        4.8    7.8   1.9    2.5  2  LsmAD            LsmAD domain
        6.6    5.4   9.2        7.3    5.3   9.2    1.0  1  ALMT             Aluminium activated malate transporter
        7.7    5.2   7.1         21    3.8   7.0    1.7  2  TssC             Type VI secretion system, TssC, VipB


Domain annotation for each model (and alignments):
>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  10.5   0.00047       2.1      94     200 ..      35     145 ..      16     146 .] 0.57

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00047
                     HHHHHTTHHHHHHC--------------.--------------------------------------SS---TTGGG--..............-- CS
  Neur_chan_memb  94 wvrkvfldklprllfmkrpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlsk.........ee 179
                     + ++v  +  ++l  ++ +++v++++ ++ +  ++++ e  +++s  +       + q++++++  ++ c++++ +++s+q+ +         ++
      EHT98058.1  35 RAQRVQRQLQNNLIEAESQQHVEEQHLQQAQLHYQRQREGLRKQSCRQ-----TLTAQVNAERTALETMCRQQQSCQQSEQRCQqvaheltqaSQ 124
                     444444444455555555555544444444444444444443333333.....333344444455555555555555555555555556667888 PP

                     ---TTTTTHHHHHHHHHHHHH CS
  Neur_chan_memb 180 lspelkkavegvkyiadhlra 200
                     + +e +k +e+ +y a+hl++
      EHT98058.1 125 HTRERQKDLEKLEYLAEHLED 145
                     99999999*********9975 PP

>> LsmAD  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.5     0.028   1.3e+02      22      53 ..      28      62 ..      20      75 .. 0.71
   2 ?    7.8   1.9    0.0011       4.8      18      50 ..     100     132 ..      91     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.028
       LsmAD 22 eykereaeAeriArEIess..ast.nahvaeergl 53
                  ++r  +A+r+ r+++++  +++ ++hv+e   +
  EHT98058.1 28 LRRQRFIRAQRVQRQLQNNliEAEsQQHVEEQHLQ 62
                56788889999999999987533337777776555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
       LsmAD  18 ksspeykereaeAeriArEIessastnahvaee 50 
                 +++++++++e++++++A+E+++ ++ + +++++
  EHT98058.1 100 RQQQSCQQSEQRCQQVAHELTQASQHTRERQKD 132
                 678999***************997776666655 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   9.2    0.0016       7.3     337     442 ..      36     139 ..      12     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0016
        ALMT 337 aeeLqskldskskLlvnsekweaakkkekaeeveekkeeeke.seskkeeaeaveeaeseseksllkeskrslklskkesapaeesleekqlskeeelk 434
                 a+++q +l+++    +++e++++ ++++ ++++ +++++++  ++++ +++ + + +++++  +++ ++++s ++s+++  +  ++l++ ++++ e++k
  EHT98058.1  36 AQRVQRQLQNNL---IEAESQQHVEEQHLQQAQLHYQRQREGlRKQSCRQTLTAQVNAERTALETMCRQQQSCQQSEQRCQQVAHELTQASQHTRERQK 131
                 567777775555...777777777776666655554444443033444444566666666677777777777777777766666677777777777777 PP

        ALMT 435 elelaeal 442
                 +le +e l
  EHT98058.1 132 DLEKLEYL 139
                 77777665 PP

>> TssC  Type VI secretion system, TssC, VipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.05   2.2e+02      77     113 ..      34      70 ..       5      77 .. 0.76
   2 ?    3.8   7.0    0.0047        21      42     102 ..      75     135 ..      37     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.05
        TssC  77 ekaeeaeellkknlkkaveevreleksyrsvalfykn 113
                  +a++++++l++nl +a ++ +  e+  ++ +l y+ 
  EHT98058.1  34 IRAQRVQRQLQNNLIEAESQQHVEEQHLQQAQLHYQR 70 
                 4678888889999888877777777777777777765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0047
        TssC  42 eekkeereelkkklelwiellessesveelvekskekaeeaeellkknlkkaveevrelek 102
                   k++ r++l+ +++   ++le+    ++  ++s++++++++++l++  +++ e+ ++lek
  EHT98058.1  75 LRKQSCRQTLTAQVNAERTALETMCRQQQSCQQSEQRCQQVAHELTQASQHTRERQKDLEK 135
                 4678889****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3406  (0.189972); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1019.30
//
Query:       EHT98059.1  [L=125]
Description: HrpP family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 909.45
//
Query:       EHT98060.1  [L=336]
Description: type III secretion system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-19   70.0   0.3    6.7e-16   58.1   0.1    2.4  2  FliMN_C   Type III flagellar switch regulator (C-ring) FliN C


Domain annotation for each model (and alignments):
>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   4.9e-05      0.88      13      33 ..     174     194 ..     173     197 .. 0.95
   2 !   58.1   0.1   3.7e-20   6.7e-16       6      72 ..     264     330 ..     260     331 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.9e-05
                 EEEEEEEEHHHHHHHHTTSEE CS
     FliMN_C  13 elgrtrltlrellnLkvGdvi 33 
                 +lgr++l  ++l +L++Gdv+
  EHT98060.1 174 VLGRITLHTSQLHALQEGDVL 194
                 8*******************8 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 3.7e-20
                 XXEEEEEEEEEEEEEHHHHHHHHTTSEEE--TTGGGCEEEEETTEEEEEEEEEEETTEEEEEEEEE- CS
     FliMN_C   6 vpveleaelgrtrltlrellnLkvGdvipLdkpadepvevyvngkpiarGelgvvggrlavriteii 72 
                 +p+ le++ grtrltl+el +L++G+v++Ld     + ++y ++ +ia+Gel+ v+g+l++++t+++
  EHT98060.1 264 LPLSLEVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQGELVDVEGQLGLQLTRLL 330
                 7999************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2869.52
//
Query:       EHT98061.1  [L=217]
Description: HrcR family type III secretion system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-60  204.2  12.3      2e-60  204.0  12.3    1.0  1  FliP      FliP family


Domain annotation for each model (and alignments):
>> FliP  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0  12.3   1.1e-64     2e-60       2     191 .]      15     212 ..      14     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 204.0 bits;  conditional E-value: 1.1e-64
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX-HHHHHHHHHHHHHHHHHHHHHHH CS
        FliP   2 ltvlslapallimvtsftrivivlsllrnalglqqvppnqvliglallltlfvmaPvleeineeavkplle..eeiteeealekakeplrefllkqtre 98 
                 l +lsl+p+l+i++t+f++i++vl ++rna+g+qqvppn+ l+g+al  tlfvmaPv+++++++  +  ++  +  + ++ ++++ +pl++f++++t++
  EHT98061.1  15 LGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFSQAPADfsNVDNLRTSITNGVTPLQKFMAHNTDP 113
                 6789***********************************************************988764431144556679*****************9 PP

                 HHHHHHHHCTT-......-SSGGGS-HHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        FliP  99 kdlalflelaek......eeeeeevplsvlipafviselkkafeigfllylpFlviDlvvasvlmslGmmmlsPvvislPfKlllfvlvdgwtllvksL 191
                 + l  + e + +      +e+ ++ +l ++ipafv+sel+++f+igfl+y+pF+viDl+v++vl++lGm m++P+++slP+K+llfvl++gwt l+++L
  EHT98061.1 114 DILIHLQENSVRmwpksmSENISKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLINGWTRLLDGL 212
                 98888888766677655566666699*******************************************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1758.33
//
Query:       EHT98062.1  [L=83]
Description: type III secretion system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-23   82.5  11.7    1.8e-23   82.2  11.7    1.2  1  Bac_export_3  Bacterial export proteins, family 3
     0.0045   15.4   2.1     0.0053   15.2   2.1    1.0  1  PTPS_related  6-pyruvoyl-tetrahydropterin synthase related do
  ------ inclusion threshold ------
       0.14   12.1   2.7       0.27   11.2   2.7    1.6  1  Syndecan      Syndecan domain
        2.7    7.1   7.3        2.1    7.5   4.6    1.7  2  Bac_export_2  FlhB HrpN YscU SpaS Family


Domain annotation for each model (and alignments):
>> Bac_export_3  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2  11.7   4.1e-27   1.8e-23       3      73 ..       1      71 [.       1      78 [. 0.97

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 4.1e-27
  Bac_export_3  3 idlarealllvlllsaplllvalvvGlvvsifQaaTqIqEqTLsfvpKllavllvllllgpwmletlvdft 73
                  ++l+++a+llv+llsap+llva++vG++vs++Qa++q+q+qTL f++Kl+av ++l+l+g w++ +l++++
    EHT98062.1  1 MNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALALSGRWIGVELLELA 71
                  5799**************************************************************99876 PP

>> PTPS_related  6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.1   1.2e-06    0.0053     108     165 ..       7      63 ..       2      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
  PTPS_related 108 lallmslialshamvalivglaifvflLllevlrkrflenlvalvaialgialssfWl 165
                   ++ll++l++   ++va+ivg++++++      l+ ++l+++++lva+++++als+ W+
    EHT98062.1   7 AMLLVVLLSAPPLLVAVIVGVLVSLLQA-VMQLQDQTLPFAIKLVAVGIALALSGRWI 63 
                   4566677777777888888888777633.35679***********************8 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.7     6e-05      0.27       2      25 ..      13      36 ..       7      39 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
    Syndecan  2 llerpevlaaviggvvvgllfail 25
                ll+ p +l+avi+gv+v+ll a++
  EHT98062.1 13 LLSAPPLLVAVIVGVLVSLLQAVM 36
                6778999***************97 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00047       2.1      63     106 ..       2      45 ..       1      53 [. 0.86
   2 ?    1.9   0.1     0.023     1e+02      25      60 ..      41      76 ..      37      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00047
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  63 elllelllallllllplllvlllaallanllqvgflfstkalkp 106
                   +l+++++l ++ll +p llv++++++l++llq  + ++ ++l +
    EHT98062.1   2 NLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPF 45 
                   688999**************************988877666655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.023
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 25 kelssalvllaglllllllgpslveelaellrevls 60
                  + l  a+ l+a+ ++l+l g+++  el el +++++
    EHT98062.1 41 QTLPFAIKLVAVGIALALSGRWIGVELLELAQQAMA 76
                  566678888999999999999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 635.29
//
Query:       EHT98063.1  [L=265]
Description: type III secretion system inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-43  148.6  21.6    2.4e-43  148.4  21.6    1.0  1  Bac_export_1  Bacterial export proteins, family 1


Domain annotation for each model (and alignments):
>> Bac_export_1  Bacterial export proteins, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4  21.6   1.3e-47   2.4e-43       2     223 ..      14     244 ..      13     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 1.3e-47
  Bac_export_1   2 lafllvfaRilallllaPvfgsrsiparvrlglalalalll....aaaalpalpsvesllllllkEvliGlllGfllrlvfaalqlaGeiidlqmGl 94 
                   +a++l  aR+  +l+l+Pvf+ + +++ vr g++lala++     +a+ + ++p +++l++l+lkE +iG+llG++++++f+ +q +G ++d+q+G+
    EHT98063.1  14 FALALSAARLYPCLILVPVFSFNILKGIVRSGVVLALAIVPtlglQAQLALQMPGWPQLIALILKEGVIGILLGLVISMPFWLFQSVGALFDNQRGA 110
                   688999**********************************999975555566777****************************************** PP

  Bac_export_1  95 smasvfdpasgaqssvlgqflnllalllflaldghllliealveSfelipvg....legk...laellvellsdlfvlalqlalPvvaalllvnlal 184
                    +   ++pa g+++++lg +l+++++l+++ + g   + +++++S++++pv+            +e  + ll+d+f+  +  a P+va+ll++++++
    EHT98063.1 111 LIGGQLNPALGSDVTPLGLLLQQTLILFLILTTGLSGVTQIIWDSYSVWPVMqwlpF--PnhnGFEQYLALLTDTFSHIIIYAGPLVALLLMMDFSI 205
                   ***************************************************877652..13456666777*************************** PP

  Bac_export_1 185 GllsRaaPqlnvfvvgfplkilvgllllllllplllevf 223
                   ++ls  +Pql+ fv+++p+k+l+gll+++l++p+l ++ 
    EHT98063.1 206 AILSLYSPQLQAFVLSVPAKCLLGLLFFVLYIPTLSTLG 244
                   *********************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2103.69
//
Query:       EHT98064.1  [L=360]
Description: type III secretion system inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-92  310.8   0.6    1.2e-92  310.6   0.6    1.0  1  Bac_export_2  FlhB HrpN YscU SpaS Family


Domain annotation for each model (and alignments):
>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.6   0.6   6.8e-97   1.2e-92       1     329 [.       2     342 ..       2     343 .. 0.94

  Alignments for each domain:
  == domain 1  score: 310.6 bits;  conditional E-value: 6.8e-97
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2   1 eeKteepTpkklrdarekGqvakskelssalvllaglllllllgpslveelaellrevlsa.........lelllelllallllllplllvlllaal 88 
                   +eKte+pT+kkl+dar+kGqv++s+++ ++l+ ++++ ++++l +  +++l++l+   l +          el+ ++ll + +++ + ++v++l+ +
    EHT98064.1   2 SEKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVMALDDVGMQKLQALMMLPLMRlnqpfeqvlSELAGSALLIVSTFFGITVAVAALLRI 98 
                   59*******************************************************99988899966655555666666667777789999999** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  89 lanllqvgflfstkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeldleaalelllslllkllllvllall 185
                   ++ ++q g lf+t+alkp++++lnp+++++++fs+++l+++l s+lk+++++++++lvl+ +le+l +la+ dl++++ ++  ll+++   +ll ll
    EHT98064.1  99 IGGWIQYGPLFATEALKPDFNRLNPVNQFRQMFSVKKLTDMLSSMLKAAAICTIFILVLSTDLESLSRLAYGDLNSFWPAVEVLLTRVSRQTLLTLL 195
                   ************************************************************************************************* PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHT.....-SEEEEETTTEEEEEEEETTTESSEEEEEEEE CS
  Bac_export_2 186 viallDlllqrwefekklkMtkqEvKdEyKesEGdpeiKsrirqlqrelarrrmmaevpk.....AdvvitNPthyAVALkYdpekmeaPvvvakGa 277
                   ++ llD+ lq++ f k+ +M++q+++dE+K+sEGdp++K+++ + ++el++   +++v++     Ad++++NPthyAVAL+Y+pe ++ P++++kG+
    EHT98064.1 196 IMTLLDFGLQKYYFLKQQRMSHQDIRDEHKQSEGDPHMKGHRHAVAQELLNA-PVQAVKReplekADLLLVNPTHYAVALYYRPELTPLPRIICKGE 291
                   *************************************************654.444444334444******************************** PP

                   HHHHHHHHHHHHHHT--EEE-HHHHHHHHHH--TTSB--GGGHHHHHHHHHH CS
  Bac_export_2 278 delAlkireiAeengvpivenppLAraLyatvevgqeIpeelyeaVaeiLay 329
                   d+ A ++   A+++++p+++  +LAr+Ly+  + gq Ip+++ +aVa++ ++
    EHT98064.1 292 DSDAKTLIVRAQQAKIPVIRFIWLARTLYQ-SQEGQLIPRHTLQAVARVYRV 342
                   *****************************8.799**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2662.99
//
Query:       EHT98065.1  [L=61]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0031   17.3   0.6     0.0071   16.2   0.6    1.6  1  DUF3721         Protein of unknown function
     0.0056   16.9   0.1     0.0079   16.4   0.1    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> DUF3721  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   7.9e-07    0.0071       6      20 ..       4      18 ..       3      19 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.9e-07
     DUF3721  6 eAearAkelGCkGaH 20
                 Ae++A ++GCkG++
  EHT98065.1  4 AAEQEALARGCKGVF 18
                6*************8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   8.8e-07    0.0079      82     117 .]       2      35 ..       1      35 [. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.8e-07
                     HHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  82 lealeerareegikkivlaveedndaairlYeklGF 117
                     l a+e++a+ +g+k +++++++   +a+++Yek G+
      EHT98065.1   2 LHAAEQEALARGCKGVFVDTFS--FQAREFYEKQGY 35 
                     889************8886655..56*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 469.74
//
Query:       EHT98066.1  [L=110]
Description: VirK family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-21   76.5   0.0    1.5e-21   76.3   0.0    1.1  1  VirK      VirK protein


Domain annotation for each model (and alignments):
>> VirK  VirK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   8.5e-26   1.5e-21      14      96 ..       2      83 ..       1      85 [. 0.95

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 8.5e-26
                TT---EEEEEGGGSE...ESS---SEEEEE--SEEEEETTTEEEEEEEEEES--TTS-EEEEEEEEEETTSEEEEEEEEEETT CS
        VirK 14 aGkevtvvidlsqCtpaeegapasktrggvrinayrvtsdgtlafsdahftvdsdgkpilefirYqvrsdgkvefkttvlnvp 96
                +Gk+++++idl+qC + +e+    ++rgg++i +y +  dg+lafsd h+tv+++ kp ++f+rY+ + ++++ f+++++ +p
  EHT98066.1  2 KGKDINLSIDLTQCFD-RENNIKGTMRGGMKITSYLIRPDGSLAFSDMHQTVNNKDKPQVQFLRYRSKDENTIGFSMRTFTLP 83
                8**************8.77777889*******************************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 988.30
//
Query:       EHT98067.1  [L=143]
Description: hypothetical protein CKS_3244 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.061   13.6   0.1       0.12   12.7   0.1    1.5  1  Virulence_fact  Virulence factor
      0.066   12.6   0.0      0.085   12.2   0.0    1.2  1  Sarcoglycan_1   Sarcoglycan complex subunit protein


Domain annotation for each model (and alignments):
>> Virulence_fact  Virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.3e-05      0.12      45      78 ..      17      50 ..       4      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
  Virulence_fact 45 rkwaeqgvrygdleeiaeevaeeleaaYpeerLe 78
                    r+ +  + +yg+ +e  ++++ el  +Yp e+Le
      EHT98067.1 17 RQSSGEQLAYGTSQELLQQALHELRTDYPPEQLE 50
                    555566789***********************97 PP

>> Sarcoglycan_1  Sarcoglycan complex subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.5e-06     0.085     205     247 ..      69     115 ..      46     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-06
  Sarcoglycan_1 205 kssnGsivLdak.....giflknlrlpisssspsssasltqyklCvCa 247
                      + G++ Ld+      +++l+ + +p++  +  + ++ ++y lCvC 
     EHT98067.1  69 ARKLGTVSLDSArvllmTMMLQANGMPKAR-RAVQGTGRVGYDLCVCN 115
                    455599999999888888888888899998.666777779*******3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1163.58
//
Query:       EHT98068.1  [L=412]
Description: hypothetical protein CKS_3243 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0006   19.4   0.0     0.0056   16.3   0.0    2.4  2  ATP-grasp_4  ATP-grasp domain


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.27   4.8e+03      52      67 ..      76      91 ..      59      92 .. 0.56
   2 !   16.3   0.0   3.1e-07    0.0056       2     155 ..     147     289 ..     146     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.27
  ATP-grasp_4 52 eesflvEeyieGeEfa 67
                 ++sf v  +i+ +Efa
   EHT98068.1 76 AQSFSVTRVIPNDEFA 91
                 4555566666666666 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.1e-07
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                  s+P+v+KP + ++S+GV +i ++ +++a +  +e       ++y +  ++e+++  E+y +   + +da +  eG+  +l+   k   +  d  d+  
   EHT98068.1 147 SFPLVMKPRSLAGSVGVKIITDAGQLSA-ITPTEG------DDYRD--MDEQQYFFESYNPQPVYQLDAIM-LEGRLALLSAG-KYIGKPIDYLDEHP 233
                  79***********************998.444443......35664..67888888888888888888888.78888888875.55555555556666 PP

  ATP-grasp_4 100 vtsakvieetleal.eellkevnallglknfpvHiElrvsedgkiipiEvnplrfag 155
                  +   +v e  l+++   ++++v a++g  +++ HiE   ++   + ++E+ + r +g
   EHT98068.1 234 LGFFSVEERDLRHIwRPFTEKVLAAFGGPDGVYHIEAFGDDGQGVELLEI-AYRPGG 289
                  66667777776666577888888888888888888888777666777777.445444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3530.45
//
Query:       EHT98069.1  [L=413]
Description: nikkomycin biosynthesis domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-08   32.3   0.0    1.7e-07   30.9   0.0    1.8  1  ATP-grasp_4      ATP-grasp domain
     0.0021   17.6   0.0     0.0041   16.7   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.027   14.0   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
       0.13   11.8   0.0       0.36   10.4   0.0    1.7  1  RimK             RimK-like ATP-grasp domain
       0.16   11.1   0.0       0.23   10.6   0.0    1.2  1  TTL              Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.9e-11   1.7e-07       2     155 ..     145     287 ..     144     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 4.9e-11
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                   +Pv++KP + ++S+G+ ++++++++ +    i+ +   ++ ey +  ++e+++l+E+y + + + +d  +  +G+  ++++ +   +  + ++++  
   EHT98069.1 145 AFPVIVKPRSLAGSMGIKIVSDAKQLAD----IDID---WSPEYRD--MDERQYLIEQYNPNTIYHIDCVV-INGRLSFISVGEYLGKPINFLQEK-P 231
                  69**********************9987....6644...8999997..79********************9.9*********86666555555554.5 PP

  ATP-grasp_4 100 vtsakvieetleal.eellkevnallglknfpvHiElrvsedgkiipiEvnplrfag 155
                  v   +v  +t e++ + ++++v a++   +++ HiE   +    + ++E++  r +g
   EHT98069.1 232 VGVLSVCDHTVEDVwQPFTEKVLAAFDAPEGVYHIEAFADSGAGVELLEIA-WRPGG 287
                  6666788888888868899*******************9988888888984.45555 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-06    0.0041      27     103 ..     135     218 ..     115     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
                      HHHHHH.HHC-SSEEEEESSSSTTTTEEEESSGGGHHHH.HHHHHTT....-SCEEEEE--..ESEEEEEEEEETSSCEEEEEEE CS
  Dala_Dala_lig_C  27 llekve.eelgypvfVKpareGSSvGvskveseeelkea.ieeafky....dekvlvEeai..egreievavlgneklevsevge 103
                      +l+++e   + +pv+VKp  +  S+G++ v+ +++l++  i+ + +y    +++ l+E++    +  i++ v++ ++l   +vge
       EHT98069.1 135 TLQNIEnGDVAFPVIVKPRSLAGSMGIKIVSDAKQLADIdIDWSPEYrdmdERQYLIEQYNpnTIYHIDCVVIN-GRLSFISVGE 218
                      44555415799*************************97534433333222134678888776566777777775.6666555555 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.6e-06     0.027       1      87 [.     115     193 ..     115     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.6e-06
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvek 87 
                  Dk+++ke+++++++ +++  +   +++e+      ++ +Pvi+k+    G  G +++++ ++la++    + e    + ++q l+e+
   EHT98069.1 115 DKKRMKELAQQAGIATAREITL--QNIEN-----GDVAFPVIVKPRSLAGSMGIKIVSDAKQLADIDIDWSPEY-RDMDERQYLIEQ 193
                  6677777777777777666666..55554.....5899*************************99855544444.255566666665 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0001      0.36      19      58 ..     124     165 ..     114     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
                 --EEEESS-S-HHHHHHTT-.-SSEEEE..E-TTTT--EEEE CS
        RimK  19 pntalardeedaekliekiklrfPvvvK..svegsqGikvvl 58 
                 +++ +a   e + + ie+ ++ fPv+vK  s+ gs+Gik+v 
  EHT98069.1 124 QQAGIATAREITLQNIENGDVAFPVIVKprSLAGSMGIKIVS 165
                 6788999999999**************966799*****9873 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.4e-05      0.23      45     108 ..     101     194 ..      64     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.4e-05
                 -----TTHHHHHHHTTTS--S-.......................B----SS---XX------BSSTHHHHHH.......HH..SSS-EEEEB- CS
         TTL  45 prtfvlpadlaefveeaekees.......................ntwIvKpsasarGkgirvfnkledikki.......vsqsqkeplvvqkY 108
                 + t ++ a+ ++f+++++ +e                          +IvKp + a ++gi ++++ +++ +i       +  + ++++++ +Y
  EHT98069.1 101 QLTGITCAEARKFRDKKRMKELaqqagiatareitlqniengdvaFPVIVKPRSLAGSMGIKIVSDAKQLADIdidwspeYRDMDERQYLIEQY 194
                 555555555555555555555555555566666666666666666789************************9999999988899999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2979.27
//
Query:       EHT98070.1  [L=366]
Description: amidinotransferase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-05   24.8   0.0       0.89    8.6   0.2    3.8  3  Amidinotransf  Amidinotransferase


Domain annotation for each model (and alignments):
>> Amidinotransf  Amidinotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   4.9e-05      0.89      23      55 ..      68     100 ..      49     167 .. 0.84
   2 !    1.9   0.0    0.0055        98     183     239 ..     206     259 ..     199     272 .. 0.80
   3 !    7.8   0.0   8.6e-05       1.5     287     340 .]     305     358 ..     300     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 4.9e-05
                    S---HHHHHHHHHHHHHHHHTTT-EEEEHHHHH CS
  Amidinotransf  23 deiilekaqkEHdafvqvLrekGveVlvledll 55 
                     e+ + ka++E ++f++ L+++G++V  +++ +
     EHT98070.1  68 PEELVVKARQEVNTFAEILQAEGIRVRRPDESN 100
                    5677889*******************9887765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.0055
                    ETTEEEEEESS.SS-HHHHHHHHHHHHHTTS-SEEEEEE--GGSSTS-GGGTEEEEET CS
  Amidinotransf 183 skgvvaigvss.RtdeegieelakklfyktvafkviaieipkgraimHldtvftvvdd 239
                    + g+ +ig  s  t+ +gie l ++l+ +    +v  i+  ++   mH+dt++ +++ 
     EHT98070.1 206 RMGRDIIGQRShVTNNKGIEWLRRTLGPD---YRV-HIYEFEEPGPMHIDTTILPLAP 259
                    55566677777789***************...555.6689999999*****9977765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 8.6e-05
                    S-EEEETTEEEEETTGHHHHHHHHHTT-EEEEE-HTTTGGGS--TTTT-EEEEE CS
  Amidinotransf 287 NvLelkpgvvvaydrntvtnekleeagievievpiselerGgGgarCmsaplfr 340
                    NvL l+++ vv+ +       + ++ g++ + +p++     gG+++C++  + r
     EHT98070.1 305 NVLMLDEKTVVVEKDEEALISAFRKWGFRTVLCPFKHFQTFGGSFHCATLDVKR 358
                    99999999998888888888888888**********************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2708.35
//
Query:       EHT98071.1  [L=175]
Description: glucan 1,4-alpha-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-55  188.6   0.0    1.7e-55  188.4   0.0    1.0  1  Glucodextran_N  Glucodextranase, domain N


Domain annotation for each model (and alignments):
>> Glucodextran_N  Glucodextranase, domain N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   9.7e-60   1.7e-55       1     145 [.      29     175 .]      29     175 .] 0.99

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 9.7e-60
  Glucodextran_N   1 ApgaPgaaptWtsaaKdgvGtaleavSrVWFTlaeGiltEvyyPtidtaqlrdlqflvtdgetfvdeekrdteskvelldpeslayrvvntdkeg 95 
                     Apg+Pg++++Wts+aK+g+Gtal++ SrVWFTl++Gil+E+yyP++d+a++rd++f++t  e++++eekrd+++++++++p+++a+ +vnt+++g
      EHT98071.1  29 APGKPGIEARWTSSAKSGIGTALSPDSRVWFTLSHGILNEIYYPRVDSACTRDFGFIITAPEGYFSEEKRDCSTETHTVSPGIPAFSIVNTARDG 123
                     8********************************************************************************************** PP

  Glucodextran_N  96 ryriekeiftDpdrdvllvrvrf..ekakeeelrlyalldphldnsgagdsa 145
                     ryr+ek+i+tDp+rd++l+r+rf   k +++++++ all+phl n+g+ ++a
      EHT98071.1 124 RYRLEKDIITDPARDCVLQRIRFtaLKGDVADYKITALLAPHLVNAGQMNTA 175
                     ***********************999999*******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1302.85
//
Query:       EHT98072.1  [L=266]
Description: glucan 1,4-alpha-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-26   91.4   2.6    8.7e-26   91.0   2.6    1.1  1  Glucodextran_N  Glucodextranase, domain N
    4.3e-08   32.4   0.1     0.0014   17.5   0.0    2.1  2  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glucodextran_N  Glucodextranase, domain N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   2.6   9.7e-30   8.7e-26     176     262 ..       1      88 [.       1      89 [. 0.97

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 9.7e-30
  Glucodextran_N 176 asvGyvGasDgltdLkadgtltweyesasdGnvaltgeldl.gtskeftlalGFgesaeeAaaeaaaslkegfeevlaaYaegWedyl 262
                     +svG+vG+sDg+++Lk+ g++ ++y++a+dGnval+gel   +  +e+ la+GFg++++eAaa+a+aslk+gf++++++Y+++W++++
      EHT98072.1   1 MSVGFVGTSDGWQQLKKYGRIANSYQRADDGNVALAGELAFtSACREAMLAIGFGQTESEAAAAATASLKAGFDKARKHYISNWQAWQ 88 
                     69**************************************9888999****************************************8 PP

>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-07    0.0014      22      63 ..     120     170 ..     102     181 .. 0.83
   2 !   12.9   0.0   3.8e-06     0.034     114     181 ..     191     259 ..     182     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-07
                     -TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHH CS
  Glyco_hydro_15  22 vtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedra 63 
                      +G+++AS +++++         +Y+++W RD v ++  ++++g+ +e+ a
      EHT98072.1 120 CPGAIVASLTIPWGfsrgdddlgGYHLVWPRDLVETAGGFLAAGDANEALA 170
                     47************************************9999997777655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.8e-06
                     --S-..-S--BTTHHHHHHHHHHHHHCTTHCHCCCCHHH.HTHHHHHHHHHHHTTS-EE-TTS--ECEE CS
  Glyco_hydro_15 114 vvGddewghlQlDatslyllalaqmtasglqiistldev.afvqnlvdYieaayktpdfglWEenqges 181
                      +G++ w ++Q+D  ++++l+   ++  g   +++l+ +  + +    Yi  +   +++++WEe  g s
      EHT98072.1 191 LDGKPYWSGIQMDECAFPVLLADMLHRLGHLDKKALKHImPMLRGAARYILTNGPATGEDRWEEDAGYS 259
                     579999**********998755444666744444444444459********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2071.91
//
Query:       EHT98073.1  [L=72]
Description: IS1330 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 548.73
//
Query:       EHT98074.1  [L=320]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-20   72.9   0.0    6.1e-20   71.8   0.0    1.5  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   3.4e-24   6.1e-20      31     209 ..      29     245 ..      15     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.4e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT98074.1  29 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegglrt 125
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999888877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT98074.1 126 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 221
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT98074.1 222 ErFGFGLRASYSRSAGRIQVLSLL 245
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2626.43
//
Query:       EHT98075.1  [L=377]
Description: glucan 1,4-alpha-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-06   26.4   0.0    5.9e-06   25.3   0.0    1.4  1  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.3e-10   5.9e-06     178     337 ..       5     164 ..       3     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.3e-10
                     ECEEHH..HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..G..GG...EETTCCECECSCH.........HHHTTS--S-B CS
  Glyco_hydro_15 178 qgeselnassvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckr..gf...wplfntylildgs....faedkeqvqeyreald 263
                     qg s++  + ++   All a+d++ l g++  a+ +++t+d + +++  k  +    +f   +   + y+++       +a+ +   +  ++  d
      EHT98075.1   5 QGYSPF--TLAVEVSALLAAADLLSLDGDEVAANHLRETADCWNEQI-EKWTFAGepDFcasVGIAGHYVRIAPPgatdEASASGETEIRNQTPD 96 
                     8999**..*********************************999999.33333333433555444555555554433333333333344444555 PP

                     CHH...........HHHHHHCS-TTS-TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS--SBTT--CGSSSBSCT--B CS
  Glyco_hydro_15 264 asl...........lllpelyfvpaddvdeeyqnpqsprllaqslyildsllsegflavgeldplvrRysedvkpdklglsGrpy 337
                     +++           l l++ + + add          p+++ ++++i+ sl+ e +  +g   pl++Ry+ d++     ++G p+
      EHT98075.1  97 RAIlsttdvlspdaLALVRFGLRAADD----------PHIVDTVKAIDHSLRVELP--QG---PLWYRYTGDGYG--EHEDGAPF 164
                     55578888888999*************..........*****************88..66...9**********6..66666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2695.68
//
Query:       EHT98076.1  [L=334]
Description: 6-phosphogluconate dehydrogenase, decarboxylating [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-38  131.5   0.0    4.3e-38  131.0   0.0    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    3.6e-22   79.1   0.6    3.6e-09   36.4   0.3    3.2  2  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
    3.1e-05   24.5   0.0    6.4e-05   23.4   0.0    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00035   20.8   0.0    0.00058   20.1   0.0    1.3  1  TrkA_N          TrkA-N domain
     0.0064   16.4   0.1     0.0095   15.8   0.1    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0069   16.0   0.1      0.011   15.4   0.1    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.041   13.2   0.0      0.061   12.7   0.0    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
       0.05   13.9   0.1       0.12   12.7   0.1    1.6  2  Gp_dh_N         Glyceraldehyde 3-phosphate dehydrogenase, NAD
      0.057   13.7   2.3       0.17   12.1   1.8    2.0  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
       0.15   12.9   0.0       0.28   12.0   0.0    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   2.4e-41   4.3e-38       1     151 [.       2     153 ..       2     161 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 2.4e-41
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S--- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasl...dvvitmvkagkavdeviegllealkkgdilidgstss 93 
                    +ig++GlG MG+nm+++llk+g++ +v+++++++v++lv+ega+ a+s+++l+a+l   ++v++m++a + + ++ ++ +++l+kgd +idg++s 
     EHT98076.1   2 QIGMVGLGRMGANMVRRLLKQGHDCVVFDVNADNVDALVKEGATDASSPADLIAKLaapRAVWLMLPA-AITPKIARDFASKLNKGDAIIDGGNSF 96 
                    69*****************************************************************9.8999999******************** PP

                    HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE CS
  NAD_binding_2  94 pedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga 151
                    ++++++l+ e +  g++++d++ SGG++g e+G  s+m+GG+++a++r+ p++ +++ 
     EHT98076.1  97 YREAIDLSGEFSPLGIDYIDVGTSGGVWGLERGY-SLMIGGPQAAVKRLDPIFASLAP 153
                    **********************************.*******************9985 PP

>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.3     2e-12   3.6e-09       1      30 [.     181     210 ..     181     220 .. 0.89
   2 !   32.3   0.0   3.6e-11   6.4e-08     169     274 ..     230     329 ..     226     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2e-12
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvl 30 
                 Gh+VKmvHNGieyg m + aE  ++lk + 
  EHT98076.1 181 GHFVKMVHNGIEYGVMAAYAEGLNILKAAN 210
                 9*************************9764 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 3.6e-11
        6PGD 169 eygwnlnlaeiariWrgGCiIrakfldkikeafeknpelenllldpefakelkealealrrvvalaveagipvpalsaalaYldslrserlp.anliqa 266
                  y +++nl ++a++Wr G++I + +ld  +ea++++p+l+n   d  +++       + r ++++ave+g+p+p+l++al    s r e l   +++ a
  EHT98076.1 230 YYRFDINLPAVAEVWRHGSVIGSWLLDLTAEALKQDPHLKNY--DGRVSD-----SGEGRWTLQTAVETGVPAPVLASALFGRFSSRGEALFaEKVLSA 321
                 6899********************************999885..434443.....345578899***************987777777766527899** PP

        6PGD 267 qrDyFGah 274
                 +r  FG h
  EHT98076.1 322 MRHAFGGH 329
                 ******99 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.6e-08   6.4e-05       1      94 [.       2      92 ..       2      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.6e-08
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH..H-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae..eadvvvlavkpedveevlselakdalkgklvisv 94
                   +ig +G G+mg+ ++++ll++g   h+ vv  + n + +++l +e   ++++ ++   a+      v l ++ + +++++++ a+++ kg  +i+ 
     EHT98076.1  2 QIGMVGLGRMGANMVRRLLKQG---HDCVVF-DVNADNVDALVKEGATDASS-PADLIAKlaAPRAVWLMLPAAITPKIARDFASKLNKGDAIIDG 92
                   59********************...****77.*************9988877.55555555466799999***********************995 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.3e-07   0.00058       4      42 ..       6      44 ..       3      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.3e-07
                ES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTS CS
      TrkA_N  4 iGlGrvGrslaeeLseggkdvvvidkdeerveelreegl 42
                +GlGr+G +++++L ++g+d+vv d + ++v+ l +eg+
  EHT98076.1  6 VGLGRMGANMVRRLLKQGHDCVVFDVNADNVDALVKEGA 44
                8***************5558**************99995 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.3e-06    0.0095       1      41 [.       2      42 ..       2      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.3e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalek 41
                +++ +G G mGa +   ++++g++ v++d++++ +++  ++
  EHT98076.1  2 QIGMVGLGRMGANMVRRLLKQGHDCVVFDVNADNVDALVKE 42
                5899***************************9999876654 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     6e-06     0.011       1      41 [.       1      41 [.       1      50 [. 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6e-06
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklns 41
                    m+i ++GlG +G+ +   l ++gh+ ++ D+++  vd+l +
      EHT98076.1  1 MQIGMVGLGRMGANMVRRLLKQGHDCVVFDVNADNVDALVK 41
                    89***********************************9865 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-05     0.061      38      80 ..       2      44 ..       1      72 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80
                  ++G++GlGr+G ++ +rl + g + +++d++ ++ ++  ++g+
    EHT98076.1  2 QIGMVGLGRMGANMVRRLLKQGHDCVVFDVNADNVDALVKEGA 44
                  79*****************************998875555555 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.8e-05      0.12       1      32 [.       1      33 [.       1      47 [. 0.84
   2 ?   -3.3   0.0       6.7   1.2e+04      40      59 ..     259     278 ..     255     287 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.8e-05
                CEEEEESTSHHHHHHHHHHHHHT.TCEEEEEE- CS
     Gp_dh_N  1 vkvainGfGRIGrlvlralleek.elevvaind 32
                +++++ G+GR+G +++r ll++  ++ v  +n 
  EHT98076.1  1 MQIGMVGLGRMGANMVRRLLKQGhDCVVFDVNA 33
                689*****************6665999999997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.7
                 HHHHHEETTTEC-SS-EEEE CS
     Gp_dh_N  40 ayllkyDsvhgrfkgeveae 59 
                 a  lk+D   ++++g+v+ +
  EHT98076.1 259 AEALKQDPHLKNYDGRVSDS 278
                 66788888888888888766 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   9.6e-05      0.17       1      31 [.     179     209 ..     179     213 .. 0.94
   2 ?   -1.6   0.0       1.7     3e+03      81      98 ..     284     301 ..     282     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.6e-05
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaeka 31 
                     GaG+ vK+v+n +    +aa +E+l ++++a
      EHT98076.1 179 GAGHFVKMVHNGIEYGVMAAYAEGLNILKAA 209
                     9************************999987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
  NAD_binding_11  81 alelareagaplpllala 98 
                     +l++a e g+p+p+la a
      EHT98076.1 284 TLQTAVETGVPAPVLASA 301
                     57899999*****99876 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.28       2      82 ..       2      79 ..       1      89 [. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
                  EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCT.TESEEEE-S-GGGHHHHHHHH CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladp.eidavivatpngtheelakaa 82
                  +++++G+G++g + +r l ++  +++ v ++d +a + +a+ +  g+   s+ ++l a+  +++av+ + p+    ++a+++
    EHT98076.1  2 QIGMVGLGRMGANMVRRLLKQ--GHDCV-VFDVNADNVDALVK-EGATDASSPADLIAKLaAPRAVWLMLPAAITPKIARDF 79
                  79*************999888..55555.89999999999955.56666666666666555899999999986666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2448.39
//
Query:       EHT98077.1  [L=456]
Description: glucose-6-phosphate 1-dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-88  294.8   0.0    7.7e-88  294.4   0.0    1.1  1  G6PD_C        Glucose-6-phosphate dehydrogenase, C-terminal d
    4.7e-51  173.9   0.0    6.5e-51  173.5   0.0    1.2  1  G6PD_N        Glucose-6-phosphate dehydrogenase, NAD binding 
  ------ inclusion threshold ------
       0.14   13.0   0.0       0.29   11.9   0.0    1.5  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.4   0.0   1.3e-91   7.7e-88       2     281 ..     181     446 ..     180     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: 294.4 bits;  conditional E-value: 1.3e-91
                 HHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEEE CS
      G6PD_C   2 vlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrGq 100
                  +RfaN+++ep+wnr++i++vqit++e++g++grg++yde+G+lrDv+qnHl+ +l l++mepPas  ++d+ dekv+vLk++ pl+     ++vvrGq
  EHT98077.1 181 YFRFANSFLEPIWNRDHIESVQITMAEDFGIKGRGKFYDEVGCLRDVIQNHLVNVLLLLTMEPPASGASDDLVDEKVQVLKAIPPLSD----DDVVRGQ 275
                 79************************************************************************************98....459**** PP

                 E.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS...---...--EEEEEEESS-EEEEE CS
      G6PD_C 101 YaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlf...kkke..rneLviriqpdeaislk 194
                 +           gY++e+gv+++S+teTf+a++++i ++rw+gVPf++r+GK+L+ + te+ ++f+++p +lf   +  +  +n + +r+ pd +i + 
  EHT98077.1 276 F----------AGYTDEPGVNPSSSTETFAAVRFRIATWRWSGVPFFIRAGKNLPAHATEVIVRFRRPPVTLFddiA--NeaANYIRFRLGPDITIGIG 362
                 *..........9*************************************************************7543..256***************** PP

                 EEEE-SSSE.....EEEEEEHHHHTT---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH---EEEETTSSS-HHHHHH CS
      G6PD_C 195 lnakkpgleleleeveldlsykerfklpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileaweeeklekYeagsrgPeeadel 281
                  + k+ g++++ e vel + +++ +     YerL+ d+++gd++lF+r+d+ e aWkiv+p+l++   + + +Y+ g++gP+++ ++
  EHT98077.1 363 ARRKAVGEKMRGEAVELTA-LDDGIGDMAPYERLIGDAMAGDRQLFTRQDSAELAWKIVEPVLDKK--TVPLSYKPGTWGPDTMADF 446
                 *****************55.6677778889**********************************99..5589*********998876 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.0   1.1e-54   6.5e-51       1     177 []      10     178 ..      10     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 1.1e-54
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 v+fG++GdLa + ++P+Ly+++++++l  ++ i+gva ++++++++ +++ke+++  k+ +e+de++++++++rl+yvsgd++ +++++ L+++l + +
  EHT98077.1  10 VVFGVTGDLAYKMIFPSLYAMVKRNTL--NTPIIGVAFEDWTRDQLIARAKESVE--KHVDEFDEAVFAALADRLSYVSGDYRIQSTFDGLRDALGD-H 103
                 8**************************..678*********************95..444569*********************************9.8 PP

      G6PD_N 100 anrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                 ++ l+Yla+ppslfe+v++ l++ag+ak    +r++vEKPfG+dl+sa++ln+ l++vf+e+ i+rIDh+LGke++qN
  EHT98077.1 104 HHPLYYLAIPPSLFETVVTGLQEAGIAK---GARLMVEKPFGRDLASAKQLNNVLHNVFDEDAIFRIDHFLGKEAIQN 178
                 99**********************9996...69********************************************9 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.29      52     106 ..      74     152 ..      39     157 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
                   SS....................HHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-....EEEEESSS-SSHHHHHHHH CS
  GFO_IDH_MocA  52 sd....................leelladpeidavivatpngtheelakaaleagk....hvllEKPlattveeakelv 106
                   +                     l++ l d +  +++ a+p+++ e ++  + eag+     +++EKP+  +++ ak+l 
    EHT98077.1  74 AAladrlsyvsgdyriqstfdgLRDALGDHHHPLYYLAIPPSLFETVVTGLQEAGIakgaRLMVEKPFGRDLASAKQLN 152
                   333334444444444444444499999999999********8877777777777777777***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3319.92
//
Query:       EHT98078.1  [L=231]
Description: polyphosphate glucokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-08   32.6   0.0    3.6e-06   26.7   0.1    2.1  2  ROK       ROK family


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1     2e-10   3.6e-06       2     142 ..      14     136 ..      13     140 .. 0.83
   2 !    4.0   0.0    0.0016        29     228     256 ..     181     210 ..     169     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2e-10
                 EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS-E CS
         ROK   2 igidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvpv 100
                 ++idiGg ++++    ++g + ++      ++  +  +v+++++l + +    d    +++g pG++  +++ + +++n++   ++++   + ++++pv
  EHT98078.1  14 LAIDIGGSHVKIL--SSAGGVKKKADS--GKTMSAAEMVAVVKNLAEGMTY--D---VIAMGYPGPV-AHNKPLREPANLGEGWVGFD--YAGAFGCPV 100
                 79*****999865..455777766666..7788888898999999999955..3...69********.99999******887776665..4578***** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETT CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviing 142
                 ++ nD+   al+ ++         ++++ +gtG+Ga++i+++
  EHT98078.1 101 RIVNDALMQALGSYQ------GGRMLFLGLGTGLGAAMIVEN 136
                 ************999......4579**************987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0016
                 HHHHHH--SEEEEEHC.CCTSTTHHHHHHH CS
         ROK 228 dlinlfdpqaivlgGg.vseadklleairk 256
                  l+++++p+ +vlgGg v+e d l ++ rk
  EHT98078.1 181 MLTAALQPEYVVLGGGnVGELDSLPPNCRK 210
                 57899********98758888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1800.07
//
Query:       EHT98079.1  [L=99]
Description: CcdB family toxin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-22   77.3   0.0    9.4e-22   77.1   0.0    1.0  1  CcdB      CcdB protein


Domain annotation for each model (and alignments):
>> CcdB  CcdB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   5.2e-26   9.4e-22       1     100 []       2      98 ..       2      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 5.2e-26
        CcdB   1 qFdvYrnpsaskkaipylldvqsdlldelktrvVvPLlraselskvakrLnpvlevegeevvlltaelaavpakeLgkkvaslseerdeiiaAlDlllt 99 
                 qFdvY +++ +  ++pyl++vqs l+d+  + +V PL+   e+     +L p++ v+g+++ ++t+++a+vp+k+Lg+kv+++s+++ +i++A+  l++
  EHT98079.1   2 QFDVYSHKNGK--KYPYLVEVQSYLIDTPGRLMVAPLALPGEFVG-SGELYPEVLVNGSKYRVVTTDIASVPVKALGDKVGDVSQYEAAIKNAIFRLFW 97 
                 9*******999..******************************99.99**********************************************99999 PP

        CcdB 100 G 100
                 G
  EHT98079.1  98 G 98 
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 793.79
//
Query:       EHT98080.1  [L=72]
Description: CcdA family antitoxin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-21   74.6   0.5    6.9e-21   74.5   0.5    1.0  1  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.5   3.8e-25   6.9e-21       1      71 []       2      72 .]       2      72 .] 0.99

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 3.8e-25
        CcdA  1 KkavnlsldsdllaqAralgiNlSatleeaLaeevkeekaerwkeenreaieelNrfveehGlfsdeyRrF 71
                K ++n+++d++ ++   ++g+NlS++++e+ + e+++ +aerwkeenre +++  +fv e+G++sd yR++
  EHT98080.1  2 KYRTNVTIDKEAYEIFSSAGLNLSKMVNELVTTEARRIRAERWKEENRESMKAFSDFVGEEGSLSDMYRNW 72
                679*******************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 592.47
//
Query:       EHT98081.1  [L=86]
Description: hypothetical protein CKS_3229 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 763.96
//
Query:       EHT98082.1  [L=141]
Description: putative anti-sigma B factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-15   57.4   0.0    1.5e-15   57.2   0.0    1.0  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.098   13.2   0.0       0.13   12.8   0.0    1.1  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
       0.15   12.1   0.0        0.2   11.6   0.0    1.3  1  DUF1910      Domain of unknown function (DUF1910)


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   2.5e-19   1.5e-15       2     123 ..      10     135 ..       9     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 2.5e-19
  HATPase_c_2   2 sadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep..keslke 97 
                  +a+++++  ++e++++ +++  +++e +  + la+ E  tN+++ha +e+++ +++v++  ++ ++t+++ D+G  f++e l+   +++   ++ +ke
   EHT98082.1  10 PATLTSLVRLAEWLAEKMEALPVNDEWRFSLDLAACETATNIIRHALNEDSHRRFTVEFIASDISITLRFMDEGSVFPAERLQAARCDAFsdQTINKE 107
                  89999999999*****999*************************************************************999999987788999*** PP

  HATPase_c_2  98 gGrGlalikglvDev..eydgegnvvtm 123
                  +GrGl li  +vD++  ey++++n++ +
   EHT98082.1 108 SGRGLKLILWYVDKFriEYSAGKNITLL 135
                  ***************5555887777666 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.1e-05      0.13      11      85 ..      49     124 ..      42     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCHHCSTCHTSTSSSH..HHHHHHH.HH CS
   HATPase_c  11 snlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfe.kfsqddstkrggggtGl..Glsivkk.lv 85 
                  n++ +a+++  +  + +ve  as+  ++++  D G   p e l+     +fs+  +t ++ +g+Gl   l  v+k  +
  EHT98082.1  49 TNIIRHALNE-DSHRRFTVEFIASDISITLRFMDEGSVFPAERLQAARCdAFSD--QTINKESGRGLklILWYVDKfRI 124
                 4555666665.4455567777767789999***************555557777..56666677776225555555545 PP

>> DUF1910  Domain of unknown function (DUF1910)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.4e-05       0.2      37      75 ..      89     139 ..      53     140 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
     DUF1910  37 ksiqae............ikilklsifkykleliiakYSlGesieeleady 75 
                 +++qa+              +  l+++ +++++  ++YS+G++i  le+++
  EHT98082.1  89 ERLQAArcdafsdqtinkESGRGLKLILWYVDKFRIEYSAGKNITLLEKSL 139
                 5555555555555553322444568899*******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1071.04
//
Query:       EHT98083.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.6   3.4    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.1   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.042   13.4   2.1      0.052   13.1   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.049   12.2   7.0      0.078   11.5   7.0    1.3  1  FUSC             Fusaric acid resistance protein family
      0.054   12.7   1.5       0.11   11.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.15   12.4   3.6       0.93    9.9   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   12.0   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.7   5.7       0.25   11.1   5.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
        0.2   10.9   0.3       0.32   10.2   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.21   11.3   2.2        0.8    9.4   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.23   11.2  10.2       0.38   10.5  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   11.6   3.7       0.55   10.6   1.8    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.47   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
          1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
        3.6    7.1   7.2        9.3    5.7   7.2    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.2    7.1   8.7         12    6.6   1.6    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5      0.12   1.1e+02     167     214 ..      34      82 ..      21     121 .. 0.47
   2 !  323.5   0.0   1.4e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   + i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT98083.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   46666666667777777777763334432...33333333333333322211 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.4e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98083.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98083.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98083.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.5e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.5e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98083.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.8e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98083.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   2.9e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.9e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98083.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   5.8e-05     0.052     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.4   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98083.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334444455555555566666677789999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98083.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.0   8.7e-05     0.078     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT98083.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00012      0.11      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98083.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3     0.001      0.93      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT98083.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98083.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   2.3e+03      26      52 ..      16      42 ..       9      60 .. 0.74
   2 ?    3.2   0.0     0.093        83      15      53 ..      64     102 ..      54     108 .. 0.81
   3 ?    5.1   0.0     0.023        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
         UME 26 laekkraikaleeliklagssissalp 52
                l+e++ +i+ + e  +l++++++ ++ 
  EHT98083.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYAS 42
                678888888888888888888766554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.093
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98083.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98083.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.7   0.00028      0.25     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98083.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00034      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98083.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00036      0.32      24      76 ..      37      91 ..      32     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98083.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00089       0.8     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.21   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT98083.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98083.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.2   0.00042      0.38      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98083.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00061      0.55       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00061
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT98083.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT98083.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.6   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98083.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98083.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0011      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHT98083.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0018       1.6      12      92 ..      13      95 ..       7     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98083.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55566667888999999999999999999999999999999999997744224445555555555555555555777776655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.2      0.01       9.3      71     152 ..      14      97 ..       2     102 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98083.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666667777888889999999998877644677888999**********************998765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.6     0.014        12      22      53 ..      12      43 ..       9      65 .. 0.88
   2 ?    2.5   1.7      0.25   2.3e+02      34      57 ..      68      91 ..      44     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98083.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98083.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888988888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1074  (0.059903); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 3728.03
//
Query:       EHT98084.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-39  133.8   0.0      2e-39  133.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.1e-43     2e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.1e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98084.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDLIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 939.50
//
Query:       EHT98085.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-07   30.9   0.0    3.5e-07   30.4   0.0    1.3  1  HTH_Tnp_1  Transposase


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     2e-11   3.5e-07      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2e-11
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n  ++Wrr+y++g++a+   
  EHT98085.1  2 QPGVSVAQLARENNINDNLQFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 834.52
//
Query:       EHT98086.1  [L=402]
Description: response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-38  131.3   0.0      7e-38  130.5   0.0    1.4  1  SpoIIE        Stage II sporulation protein E (SpoIIE)
    1.4e-27   96.0   0.0    2.8e-27   95.1   0.0    1.5  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
      0.075   13.4   0.0       0.16   12.3   0.0    1.5  1  PilZ          PilZ domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   1.2e-41     7e-38       2     192 ..     192     397 ..     191     398 .. 0.90

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 1.2e-41
                 TTEEEEEEEECSSSSHHHHHHHHHHHH.HHHHHHHTTTS............HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEE CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrs.alrelatagle............paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppl 87 
                 d++l+++  Dv+GhG++Aa+++ ++    l+  +    e            paev++ ln+++++d  e + ++T++++v+++ +g+ ++++aGhp p+
  EHT98086.1 192 DNHLGFYCVDVSGHGVGAAMMSLAVARqFLHGRTV---ErflldgdkgvvsPAEVVRILNERFCSDEAEIVSYFTLIYGVINLTSGEGRLCQAGHPTPF 287
                 578999*************9998764404433333...233477999****************9999999***************************** PP

                 EEETTSTEEEEE--SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH......HTTSS CS
      SpoIIE  88 lvrpdggtklllastglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveelle......lgsge 180
                 +v+p +g+     ++g+p+G++p++ +++++++l+pg++l+l++DG+tE+++  ge fg+erl   ++++ ++ +++ll++l ++l +      ++++ 
  EHT98086.1 288 IVTP-HGQIRTVGEGGAPVGLMPHLSWTDVSFTLAPGERLCLFSDGITECENLAGEQFGQERLQTCIQDSIAQAPDDLLQQLGQHLIRwrsgenTEQHA 385
                 ****.7777777899*****************************************************999999*******************999999 PP

                 SSS-EEEEEEEE CS
      SpoIIE 181 leDDitllvlrv 192
                 ++DD++ll++++
  EHT98086.1 386 MADDVSLLIIEH 397
                 *********986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   4.7e-31   2.8e-27       1     111 [.       6     117 ..       6     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 4.7e-31
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   vliv+D+ + r+ll+++l++ gy +v eae+g  al +l+++ v +++ D++mp+mdGl+l++eir ++  + +  i+lta+++ +d++++++ag+d
    EHT98086.1   6 VLIVEDSLVYRRLLSRMLTQWGY-RVSEAENGIVALSILETQPVSMVISDWEMPEMDGLTLCREIRGRQlgHYIYFILLTARENPNDLTQGFDAGVD 101
                   8**********************.*****************************************98887788999********************* PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   dflsKp++++eL+++l
    EHT98086.1 102 DFLSKPVEQSELRARL 117
                   *************987 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.16      22      76 ..     192     249 ..     185     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                 TEEEEEEEEEEESSEEEEEES....T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECT CS
        PilZ  22 egelkgrliDiSlgGlairlp....deelalgdrvelklpldkdqelslpgrVvrvkpe 76 
                 +++l  +++D+S++G++  +       ++  g  ve  l  d+d+ +  p++Vvr+ +e
  EHT98086.1 192 DNHLGFYCVDVSGHGVGAAMMslavARQFLHGRTVERFLL-DGDKGVVSPAEVVRILNE 249
                 6678889********555555555779*******999999.9*************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3181.19
//
Query:       EHT98087.1  [L=299]
Description: hypothetical protein CKS_3222 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2166.86
//
Query:       EHT98088.1  [L=605]
Description: cellulose synthase (UDP-forming) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-19   69.9   0.0    5.2e-19   68.7   0.0    1.6  1  Glycos_transf_2  Glycosyl transferase family 2
    7.4e-13   48.9   0.3      3e-12   46.9   0.3    1.9  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    2.1e-10   40.8   2.1    2.1e-10   40.8   2.1    3.3  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    4.9e-09   35.9   0.0    9.3e-08   31.7   0.0    2.2  2  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
        6.7    5.8   9.1       0.35   10.0   1.5    2.5  3  Peptidase_M56    BlaR1 peptidase M56


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   1.5e-22   5.2e-19       2     166 ..     113     305 ..     112     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.5e-22
                      EEEEESS-.TTTHHHHHHHHHHH..GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   2 vviptyNe.ektlletlesllaq..dpypdfeiivvDDgStDetveileelakedprvrvirreenv.GkagalnaglraatgdyilflDaDde 91 
                       +i ty e  ++++ +++ +l++  + +++++i v+DDg + e +++++e      +v +i+r  n   kag+l++gl+++ gd+++++DaD+ 
       EHT98088.1 113 LFIATYSEdVELVRLSVRDALKMqyPFPLHYQIHVLDDGRRPEMKAVCDEE-----GVNYITRQTNIgYKAGNLRNGLENTEGDFLVICDADTR 201
                      6899****9999999999999999***************************.....9**********99************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS...............................EEEECCHCCCCHCCCCCCSTTC CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrv...............................generlyfkerkrslkgnlsfe 154
                      + p  l+ +++++ +  +dv+++q+p  f++  e e  +++                               +   ++y  + +r+   n++f+
       EHT98088.1 202 VFPTLLSHTLGYFRD--PDVAWVQTPQWFYDLPEGENLSNWlqrkagkvgyglgwltqkfvgpvtigrdpffNDPRMFYDVILRRRNWANAAFC 293
                      ***************..667*****************9999******************************9999999999************* PP

                      STCCCEEEEHHH CS
  Glycos_transf_2 155 igsaallrreal 166
                      +g a++ rrea+
       EHT98088.1 294 CGAASVHRREAV 305
                      *********997 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.3   8.4e-16     3e-12       5     225 ..     112     402 ..     108     407 .. 0.70

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 8.4e-16
  Glyco_tranf_2_3   5 avlVptfneedvlge.vlesllaqey..pr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                       ++++t+ e+ +l++  ++++l+ +y  p  +++ v +d+ + e  +v++e       ++v++++++ n g   k+ +l ++l+++++d++++ 
       EHT98088.1 112 DLFIATYSEDVELVRlSVRDALKMQYpfPLhYQIHVLDDGRRPEMKAVCDE-------EGVNYITRQTNIG--YKAGNLRNGLENTEGDFLVIC 196
                      579*******9999979*****9999655589999999***********99.......689***9999877..7******************** PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkrllqffltpkvgavgtpvfl......lnrstl.................................................. 132
                      D+Dt+v P++l  +l +f++p+v+ v+tp+++      +n s++                                                  
       EHT98088.1 197 DADTRVFPTLLSHTLGYFRDPDVAWVQTPQWFydlpegENLSNWlqrkagkvgyglgwltqkfvgpvtigrdpffndprmfydvilrrrnwana 290
                      ******************************9955444434446688888888888888888888776666555555555555555555555555 PP

  Glyco_tranf_2_3 133 .............vsalgalefaerhlrflaarralgvltlnGsgslirrevlkele......................gldp.lflltdDyel 190
                                     +  al+ + +  ++   r++                     +                       l+p +f++ +D+ +
       EHT98088.1 291 afccgaasvhrreAVMQAALRSYVWTVEEEIDRHTR--------------------DihdaatrealrdamrphvafdtELTPyKFHVSEDIYT 364
                      555555554444322223444444444444433333....................03333333333333344444443566668888888877 PP

  Glyco_tranf_2_3 191 glrlrr...agfrtayvpgaavrevfpsslkayikqrn 225
                      +  l     +++r++++p+++   ++p++      qr+
       EHT98088.1 365 SILLHGdagRRWRSVMHPRVESKMLSPQDMLTWMIQRF 402
                      77776666788888888888777777777666666666 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.7   7.2         5   1.8e+04     165     195 ..      40      57 ..      17      80 .. 0.38
   2 !   40.8   2.1   5.9e-14   2.1e-10       3     193 ..     194     467 ..     192     486 .. 0.70

  Alignments for each domain:
  == domain 1  score: -6.7 bits;  conditional E-value: 5
  Glyco_trans_2_3 165 salplhlallllfsllalalvlllllllaal 195
                      +++ ++++             + l ++++++
       EHT98088.1  40 NYIYWRWT-------------ASLNIYALWY 57 
                      22222222.............2111111111 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 5.9e-14
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaelaspevaivqgpvlvm..nvanwleelaalffaedhgkdilvrealgrvvp....................... 71 
                      ++ DaDt++ p  l  ++  +++p+va vq+p  ++  + ++ l+++         + +++ ++++ ++v+                       
       EHT98088.1 194 VICDADTRVFPTLLSHTLGYFRDPDVAWVQTPQWFYdlPEGENLSNWLQRKAGKVGYGLGWLTQKFVGPVTigrdpffndprmfydvilrrrnw 287
                      899*****************************77644856666666666665555555555555555555555555555555555555555555 PP

  Glyco_trans_2_3  72 .....svGsgaflrrsalqevg...........................................gwdgdessvsEDfdmglrlq.rkG..yrv 114
                           + G+ ++ rr+a+ +++                                           +++   ++vsED + ++ l   +G  +r 
       EHT98088.1 288 anaafCCGAASVHRREAVMQAAlrsyvwtveeeidrhtrdihdaatrealrdamrphvafdteltPYK---FHVSEDIYTSILLHgDAGrrWRS 378
                      5555499**********995555555555555555666666666666666666666665555543554...8************6588844666 PP

  Glyco_trans_2_3 115 rfvpeslvkekspltlraalrQrkRwayGc..el........eklillvrllgylgsllwsalplhlallllfsllalalvllllllla 193
                      +++p +  k  sp ++ +++ Qr ++a G    l        ++ +l + +  ++g+ +ws+l + +  ++lfs ++++++ ++++ ++
       EHT98088.1 379 VMHPRVESKMLSPQDMLTWMIQRFKYAAGSldILfhdnifsrRRFRLSLPQTLMYGTTFWSYLACIWNTVFLFSPIIYLFTGIPPVSAW 467
                      66677778888******************8761155555554444445566699*************9999999877777776665444 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.6e-11   9.3e-08      12      67 ..     171     226 ..     163     242 .. 0.92
   2 ?    1.4   0.0     0.053   1.9e+02      90     116 ..     280     308 ..     269     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.6e-11
  Glyco_transf_21  12 pvgvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslp 67 
                      ++++ +K  nl ++le  + d+lvi+D+d+rv p+ L + l++++dp+v++V+ + 
       EHT98088.1 171 QTNIGYKAGNLRNGLENTEGDFLVICDADTRVFPTLLSHTLGYFRDPDVAWVQTPQ 226
                      677899**********************************************9875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.053
  Glyco_transf_21  90 vlqa..klsglgfavGksmalrreaLeai 116
                      v+ +  +++ + f++G++ + rrea+ ++
       EHT98088.1 280 VILRrrNWANAAFCCGAASVHRREAVMQA 308
                      44444789999*************99775 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5   9.7e-05      0.35      10      66 ..      29      78 ..      22     113 .. 0.76
   2 ?   -2.2   0.0      0.52   1.9e+03     241     262 ..     155     176 ..     145     179 .. 0.82
   3 ?   -1.1   0.6      0.24   8.6e+02     213     234 ..     437     458 ..     434     460 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.7e-05
  Peptidase_M56 10 aaiavllvlllrrilrrllsaiaaYalWlivllallipfipesavslpvkfetskin 66
                    +++  l+l   +i+ r+++  + YalW+ ++l l   f++  ++         +in
     EHT98088.1 29 VLAVAALILGANYIYWRWTASLNIYALWYSIPLVLAETFAWIGTILF-------TIN 78
                   56777899999******************************555553.......223 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.52
  Peptidase_M56 241 DqElaCDaaVLarlekeerkeY 262
                     + ++CD++ ++++ +++ + Y
     EHT98088.1 155 EMKAVCDEEGVNYITRQTNIGY 176
                    67789***********999998 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.24
  Peptidase_M56 213 lvnllvavlqclfwfNPlvhla 234
                     + +l+ + + +f f P+++l+
     EHT98088.1 437 FWSYLACIWNTVFLFSPIIYLF 458
                    688999999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4386.95
//
Query:       EHT98089.1  [L=443]
Description: hypothetical protein CKS_3218 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-87  293.3   0.8      3e-87  293.1   0.8    1.0  1  DUF3131   Protein of unknown function (DUF3131)
  ------ inclusion threshold ------
      0.086   12.8   0.1        1.6    8.8   0.0    2.7  3  FlhE      Flagellar protein FlhE


Domain annotation for each model (and alignments):
>> DUF3131  Protein of unknown function (DUF3131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.8   3.4e-91     3e-87       2     366 .]      66     421 ..      65     421 .. 0.94

  Alignments for each domain:
  == domain 1  score: 293.1 bits;  conditional E-value: 3.4e-91
     DUF3131   2 yAraAWsYfernyqpeTGLvnsvddypsvTlWdvGsyllAlvaAreLglidkkefderirklLktLaklplfkgelPnkvyntrtlemvdygnnpkeeg 100
                 +Ar+AW+Y+++n+qp+ GL+n+ d+ p+ +lW +Gsyl+A++aA++L++++++efderi  +L tL+++pl+ + lP+ +y+++tl+++  g       
  EHT98089.1  66 WARVAWQYYVNNTQPN-GLANANDGEPWLSLWSIGSYLFAVTAAKQLNVLTTDEFDERIAAALLTLSQIPLTPDGLPAAYYHADTLKLL--G------K 155
                 8*************97.***********************************************************************6..3......3 PP

     DUF3131 101 igwsAlDigRllaaLkvlktrypeyadaveaivarWslsrlvkd.gqlygaivkkdek.lqvvqegrlgyeeYaarglqlwgfdvekalskepy..ktv 195
                 ++ sA+ +gRll aL++l +ryp++a+av+ + ++W++ +l+ +  + ++a++ +++   +  +++ +gy+ Ya+++l+l++  +  a++++p+  +++
  EHT98089.1 156 QESSAIGMGRLLNALQTLVWRYPQHATAVRDLFKQWNVGALIVKnSASQAAVALHQWAlATDEPKNSFGYRLYASHTLRLIDSVAGLAVTNPPErqQMI 254
                 367*************************************987725556666666665588899999**********************99988768** PP

     DUF3131 196 evegvevpvdrrdlkkteannyvvsepylleglElGfdaelkelaerlleaqkeryeetgkltAvsednidraPyfvystviangepWavitddgkevp 294
                 +++g++vp++  ++   + + +++s pyll+glE+Gfda+++e+a+r++++q++r++ +     +s+d  + aP ++ +  +   +p +  + + ++ +
  EHT98089.1 255 DIDGIMVPDEGLRTP-WGRQPSLISLPYLLTGLEMGFDAQSAEIAWRIMQIQQRRHSLRVSKPPISTDYAEPAPDYANDLPDR--QPVQNGDLRDEAPE 350
                 ***********9999.57899******************************************************98887765..88888888889999 PP

     DUF3131 295 elrlvStkaAfawsalfedeYtqelleavkeladperGyyeGlyeetgkvnksltantNgiiLeaLlYkarg 366
                 +++++St++Afaw+alf+++++++l+++v+ l+ p +G+++Gl+ + g++n++++a+tN+++Le+L+Y  +g
  EHT98089.1 351 QTAITSTRSAFAWYALFRNRWSEALRQQVQPLQVPGKGWQRGLNLD-GSINTVIDADTNAVVLESLAYIVQG 421
                 9********************************************9.*********************9876 PP

>> FlhE  Flagellar protein FlhE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00018       1.6      14      47 ..      51      84 ..      41      86 .. 0.85
   2 ?   -1.8   0.0      0.35   3.1e+03      28      42 ..     169     183 ..     160     188 .. 0.76
   3 ?   -0.0   0.0     0.097   8.7e+02      28      48 ..     293     313 ..     280     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00018
        FlhE 14 palappasapaasavitsvsWryellsaapaglr 47
                p+l +p +++ ++a+ ++v+W+y +++++p+gl 
  EHT98089.1 51 PPLPTPRELTFEEAIWARVAWQYYVNNTQPNGLA 84
                6777778888889999***************995 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.35
        FlhE  28 vitsvsWryellsaa 42 
                 ++++++Wry  + +a
  EHT98089.1 169 ALQTLVWRYPQHATA 183
                 678999*99776555 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.097
        FlhE  28 vitsvsWryellsaapaglrv 48 
                 + ++++Wr+   ++++++lrv
  EHT98089.1 293 QSAEIAWRIMQIQQRRHSLRV 313
                 56799****999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3188.07
//
Query:       EHT98090.1  [L=515]
Description: hypothetical protein CKS_3216 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-146  488.6   1.0   1.3e-146  488.4   1.0    1.0  1  DUF3131   Protein of unknown function (DUF3131)


Domain annotation for each model (and alignments):
>> DUF3131  Protein of unknown function (DUF3131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.4   1.0  7.4e-151  1.3e-146       2     366 .]      50     426 ..      49     426 .. 0.99

  Alignments for each domain:
  == domain 1  score: 488.4 bits;  conditional E-value: 7.4e-151
     DUF3131   2 yAraAWsYfernyqpeTGLvnsvddypsvTlWdvGsyllAlvaAreLglidkkefderirklLktLaklplfkgelPnkvyntrtlemvdygnnpkeeg 100
                 +A++AW+Yf++nyqp+TGLvn+v++yps+T+Wd +syl+Al+aAreLg+idk+efd+r+ k+L+tL++l lf++elPnk+ynt +++ vdy n+p   +
  EHT98090.1  50 IAKNAWQYFVANYQPSTGLVNAVNKYPSTTMWDSASYLAALTAARELGIIDKAEFDRRMLKFLATLNTLVLFRNELPNKAYNTISGQKVDYRNQPG--E 146
                 79*********************************************************************************************9..* PP

     DUF3131 101 igwsAlDigRllaaLkvlktrypeyadaveaivarWslsrlvkd.gqlygaivkkdeklqvvqegrlgyeeYaarglqlwgfdvekalskepyktveve 198
                 ig+sAlDigR+l++Lkv+k+rypey++ ++++v+ W++s+ v+  g+lyga++++++  ++vqegrlgyeeY+a g+qlwgf++ +a++ +py+ +e++
  EHT98090.1 147 IGFSALDIGRMLVWLKVIKERYPEYSNGIDNVVLGWDFSHAVDPcGTLYGAYLENGQ-PKYVQEGRLGYEEYSAAGFQLWGFNTCQASRPQPYELAEIY 244
                 ******************************************************999.***************************************** PP

     DUF3131 199 gvevpvdrrdlkkteannyvvsepylleglElGfd..............aelkelaerlleaqkeryeetgkltAvsednidraPyfvystviangepW 283
                 +v vp+d+rd+++t+++nyvv+e+yll+glE+Gfd              +++k++a+r+++aq++ry+ tg+ltA+se+++d+aPyfvy+t++++g++W
  EHT98090.1 245 CVLVPYDSRDPRDTSQHNYVVTESYLLYGLEFGFDkatdrdnsprnyshPWMKNFADRVYQAQENRYAITGILTARSEHQLDKAPYFVYDTIFSDGYNW 343
                 *************************************************************************************************** PP

     DUF3131 284 avitddgkevpelrlvStkaAfawsalfedeYtqelleavkeladperGyyeGlyeetgkvnksltantNgiiLeaLlYkarg 366
                 ++itd+g+ vp+ ++vS kaA+++++l++++Yt++ll+a+++++++ +GyyeGlye+ + + k +tan+Ngi+LeaLl+k++g
  EHT98090.1 344 NTITDKGQFVPNSAAVSLKAALGMWVLWSSPYTDRLLNAIENANEEGKGYYEGLYENGDGPIKEFTANNNGIMLEALLFKKEG 426
                 ********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3782.43
//
Query:       EHT98091.1  [L=465]
Description: hypothetical protein CKS_3215 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-113  380.2   0.3   1.2e-113  380.0   0.3    1.0  1  DUF3131   Protein of unknown function (DUF3131)


Domain annotation for each model (and alignments):
>> DUF3131  Protein of unknown function (DUF3131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.0   0.3  6.5e-118  1.2e-113       1     366 []      54     425 ..      54     425 .. 0.98

  Alignments for each domain:
  == domain 1  score: 380.0 bits;  conditional E-value: 6.5e-118
     DUF3131   1 eyAraAWsYfernyqpeTGLvnsvddypsvTlWdvGsyllAlvaAreLglidkkefderirklLktLaklplfkgelPnkvyntrtlemvdygnnpkee 99 
                 e+A +AW+Yf++n+q +TGLvn +d+ p vTlW++G++l+Al +AreLgl++++efd+ri++lL+tL++l l++++ P ++y+++t+ ++dy++++   
  EHT98091.1  54 EWAAIAWRYFQNNTQLQTGLVNGSDKQPRVTLWQMGDTLIALLSARELGLVPEDEFDARISRLLGTLNRLALTNTRTPGRLYSSQTAMPIDYTGKSI-- 150
                 69**********************************************************************************************9.. PP

     DUF3131 100 gigwsAlDigRllaaLkvlktrypeyadaveaivarWslsrlvkd.gqlygaivkkdeklqvvqegrlgyeeYaarglqlwgfdvekalskepyktvev 197
                   gwsA D++Rl++aL+  ++r p+y++ +++i++rW+++ ++++ g+l +a+v++++   v +e rlg +eYaa +++lwgf ++ka + +p ++v v
  EHT98091.1 151 SSGWSAKDMARLMLALRLTAERAPHYREYLDKIILRWNFCSVINNeGELWSASVQNGQ-PVVREELRLGESEYAASAFRLWGFPASKAFT-PPARNVIV 247
                 78******************************************99*********999.99***************************66.66779*** PP

     DUF3131 198 egvevpvdrrdlkkteannyvvsepylleglElGfd.........aelkelaerlleaqkeryeetgkltAvsednidraPyfvystviangepWavit 287
                 + +++ vd rd+++t++ + +++ p +l glE+G++         + +++ ae +   qk+r+e+ + ltA+++ ++++aP+++ +tv+ ng++W+++ 
  EHT98091.1 248 YQRSLSVDARDPRTTWQPSLLTTLPAMLPGLEFGWQppgvppdvqKLMRTRAEGIWLSQKSRWERDKLLTARADFSLSHAPWHLEDTVWGNGYAWNTLG 346
                 ********************************************999**************************************************** PP

     DUF3131 288 ddgkevpelrlvStkaAfawsalfedeYtqelleavkeladperGyyeGlyeetgkvnksltantNgiiLeaLlYkarg 366
                 ddg+++ +l  vStka+f +++l++++Yt+ l++++k+l++p+rG++eG++e tg++n ++t++tN+++Le+L+Yk++g
  EHT98091.1 347 DDGRDYRQLSQVSTKAVFILWTLWKNDYTDVLMAVTKHLNSPQRGWFEGRVEATGDINPMITLSTNAMVLESLFYKHNG 425
                 ****************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3478.73
//
Query:       EHT98092.1  [L=144]
Description: hypothetical protein CKS_3214 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1062.04
//
Query:       EHT98093.1  [L=890]
Description: sensory box histidine kinase/response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-41  140.4   0.1    1.9e-22   79.6   0.0    2.7  2  Response_reg  Response regulator receiver domain
    2.1e-32  112.0   0.0      4e-32  111.0   0.0    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    4.5e-22   77.8   0.0    4.5e-22   77.8   0.0    3.9  4  HisKA         His Kinase A (phospho-acceptor) domain
    5.3e-15   55.6   0.0    1.2e-13   51.2   0.0    2.7  2  PAS_7         PAS fold
    1.4e-11   44.5   2.7    5.2e-11   42.6   2.7    2.1  1  Hpt           Hpt domain
    2.6e-11   43.7   0.1    3.4e-10   40.1   0.0    2.5  2  PAS_3         PAS fold
     0.0034   17.6   0.0      0.018   15.3   0.0    2.3  2  PAS_9         PAS domain
     0.0037   17.6   0.2       0.58   10.5   0.0    3.1  3  FleQ          Flagellar regulatory protein FleQ
      0.008   16.2   0.8       0.14   12.2   0.3    2.9  2  PAS           PAS fold
  ------ inclusion threshold ------
       0.03   14.6   0.3       0.43   10.8   0.2    2.9  2  PAS_4         PAS fold
       0.16   11.8   0.0       0.34   10.7   0.0    1.4  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   4.8e-19   7.8e-16       1     111 [.     511     623 ..     511     624 .. 0.94
   2 !   79.6   0.0   1.2e-25   1.9e-22       1     111 [.     651     765 ..     651     766 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 4.8e-19
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkaga 94 
                   vl+vdD+ ++++l+ ++l++ g+ + + ++++++al+ +  e    lil+D +mp+mdG+ l  e+   +   + ++i+l++ s + d +   ++g+
    EHT98093.1 511 VLVVDDNSTNLRLVDTMLRQMGL-NPTCVNNASKALQPAAGEVfWPLILIDAQMPDMDGISLGLELSVLPqtAQSKIIMLSSMSRHFDPKMLKRIGI 606
                   8**********************.8888999999999998877689********************99887788*********************** PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   + +l+Kp+++ eL++a+
    EHT98093.1 607 SHYLHKPVAQHELHQAI 623
                   ***************98 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 1.2e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHHHHHHC CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed.....pelpviiltahseeedavealka 92 
                   vl+++D+ +++++ r+lle+ g  +++++ dg++al+ +++e+ d++++D++mp+mdG ++++ +r+e+     p  p i++tah+ + d++++l +
    EHT98093.1 651 VLLAEDNLVNQKVARRLLERLGH-HCEVVGDGQAALDRWRAERWDILFIDLQMPEMDGEKAIQLLRQEEvllgrPRQPAIVMTAHAMQGDRERCLAM 746
                   89*********************.*********************************************9999999********************* PP

                   TESEEEESSG-HHHHHHHH CS
  Response_reg  93 gaddflsKpfdpeeLlkal 111
                   g d++l+Kp+++++L++ +
    EHT98093.1 747 GFDGYLAKPVSQDALHDEI 765
                   ***************9876 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   2.5e-35     4e-32       2     111 ..     380     491 ..     379     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 2.5e-35
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE..EETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika..seddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 d +rLrqi+ nl++Na+kf t+ ge+ + i++  sed+ +++++D+GiGip e+++ +fe+fsq d+st+r++ggtGlGl+i+ +lv lmgG+++ves+
  EHT98093.1 380 DGPRLRQILTNLLGNALKF-THHGEVLLAIEPaaSEDHWRFRIRDSGIGIPAEKQQAIFEAFSQaDSSTTRRYGGTGLGLTISARLVALMGGNLEVESK 477
                 678****************.99****99999866669************************************************************** PP

                 TTTEEEEEEEEESS CS
   HATPase_c  98 pgrGttftftlple 111
                 pg G++ftftlple
  EHT98093.1 478 PGVGSEFTFTLPLE 491
                 ************97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       3.9   6.4e+03      43      58 ..     229     244 ..     227     250 .. 0.82
   2 !   77.8   0.0   2.8e-25   4.5e-22       1      67 []     267     332 ..     267     332 .. 0.97
   3 ?   -4.0   0.1       9.6   1.6e+04      13      24 ..     384     395 ..     383     395 .. 0.68
   4 ?   -0.4   1.5      0.72   1.2e+03      33      56 ..     819     847 ..     795     875 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHHH CS
       HisKA  43 tiesearrldhlvedl 58 
                 ti++ea+r+   ++d+
  EHT98093.1 229 TIQQEAERVIGTLQDI 244
                 7999999999888887 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 2.8e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++ fla+++HE+rtP+++ilg+++++ ++ +l++e++eyl  + s+a+ l+h+++d+Ld+srie+g
  EHT98093.1 267 AKSAFLANMSHEIRTPMNGILGMTQLCLDT-PLSPEQREYLSLVMSSAQSLLHIINDILDFSRIESG 332
                 5899***********************996.**********************************97 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 9.6
                 HHHHHHHHHHHH CS
       HisKA  13 LrtPLsailgna 24 
                 Lr+ L+ +lgna
  EHT98093.1 384 LRQILTNLLGNA 395
                 677777777775 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.72
                 -HSSCHHHHHHHHHHHH.....HHHHHHH CS
       HisKA  33 lteelkeyletiesear.....rldhlve 56 
                  +e l+++ ++++ ea      rl +l++
  EHT98093.1 819 DRETLRRAAHKLRGEAVtldftRLAQLLQ 847
                 34444444444444444444444444444 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   7.5e-17   1.2e-13       4     114 ..      12     121 ..      10     122 .. 0.89
   2 ?    1.0   0.0      0.29   4.7e+02     101     114 ..     238     251 ..     218     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 7.5e-17
       PAS_7   4 msqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellrynaergefgagdveaeverrlaaaragkphsfererpdgrvievrgnplpdgGfVt 102
                 ++ +i+++D+++rL+awN+++   + + +  +++g++le+l++   e g + +++++++++  +   + ++ ++ e++++  r + +++++lp+gG+V+
  EHT98093.1  12 LPCAIMIYDRAERLLAWNDKVSLFYPVIAPWLEAGASLETLVEKFIEAGYYIDSSRRQTLRDAT-LRNCRQDNHCEVRQSGKRRLYFQHQRLPEGGIVS 109
                 5678************************************************777777766665.334466888999999******************* PP

       PAS_7 103 tytDiTerrrae 114
                  +tD+Te  +a+
  EHT98093.1 110 LHTDVTELDEAQ 121
                 *******98887 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.29
       PAS_7 101 VttytDiTerrrae 114
                 + t +DiT+r++ae
  EHT98093.1 238 IGTLQDITRRKEAE 251
                 6799********98 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   2.7   3.2e-14   5.2e-11       1      79 [.     795     868 ..     795     878 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.2e-14
                 HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHH CS
         Hpt   1 ellelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepellealkall 79 
                 ell lf+e +ee  e+l++a++ +d++ l+raaH+L G a +l +t+la+l + lE+     +  +le+ +l  l++ l
  EHT98093.1 795 ELLSLFREAIEETTETLRKAMENNDRETLRRAAHKLRGEAVTLDFTRLAQLLQYLES-----QASSLEQHALKSLQNDL 868
                 799******************************************************.....77777777777666655 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.1e-13   3.4e-10       3      88 ..     153     240 ..     151     241 .. 0.94
   2 ?    0.4   0.0      0.49     8e+02      13      50 ..     798     833 ..     792     848 .. 0.78

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.1e-13
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkge.pyegeyRirrkdGeyrwveararvi.rdengkpvrvigv 88 
                  v+++   ++G s+++ +  ++++l+lvh eDr+ +r+a++ + ++ + ++e+e+R++++  ++rw+  +++v+    + +  rvig+
  EHT98093.1 153 QVNDTLLAMVGQSRSQWRYPLRFLLNLVHEEDRASLRQAMMSSKQDHRpVFECEIRVLHQTEGWRWMLLSGQVVtLTIQQEAERVIGT 240
                 68999**************************************99999888***********************99999999999998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.49
       PAS_3  13 GyspeellgkveswldlvhpeDrervrealqealkkge 50 
                  + +e ++++ e++++++   Dre +r+a +++   ge
  EHT98093.1 798 SLFREAIEETTETLRKAMENNDRETLRRAAHKLR--GE 833
                 555788899999****************998764..44 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.6   1.1e+04       1      20 [.      13      32 ..      13      41 .. 0.85
   2 !   15.3   0.0   1.1e-05     0.018      14     103 ..     152     245 ..     147     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.6
       PAS_9  1 pdgilidnpdgrilyaNeaa 20
                p++i+i++   r+l +N+++
  EHT98093.1 13 PCAIMIYDRAERLLAWNDKV 32
                68999988888999***986 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.1e-05
       PAS_9  14 lyaNeaalrllGyspeevlgksitdlf..vtdpeanerlraaleqgrk..kerevevvlirkngetfwvlltaspvkdd.dgelvgiivilrDit 103
                 l +N+++l + G+s+ +    +++ l+  v+++++++  +a++ ++++  +++e e+   + +++  w ll+   v  + ++e  ++i++l+Dit
  EHT98093.1 152 LQVNDTLLAMVGQSRSQ-WRYPLRFLLnlVHEEDRASLRQAMMSSKQDhrPVFECEIRVLHQTEGWRWMLLSGQVVTLTiQQEAERVIGTLQDIT 245
                 67999999999988888.677888888988999999999999999999****************************9999**************9 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.051        84       2      32 ..     511     541 ..     510     571 .. 0.84
   2 !   10.5   0.0   0.00036      0.58       1     103 [.     650     764 ..     650     767 .. 0.70
   3 ?   -3.7   0.1       9.4   1.5e+04      14      38 ..     841     865 ..     833     872 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.051
        FleQ   2 iLvidddaerrrdletiLeFlgeeveavsse 32 
                 +Lv+dd++++ r + t L+ +g ++  v+++
  EHT98093.1 511 VLVVDDNSTNLRLVDTMLRQMGLNPTCVNNA 541
                 8*********************998877765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00036
        FleQ   1 kiLvidddaerrrdletiLeFlgeeveavsseel.saaleesssealavilgsvs....sleeal..ealaekdphlPvlllgesdeaeelan.....v 87 
                 ++L+ +d+  +++    +Le lg+++e+v++ ++  +  + +++++l++ l+  +    ++ ++l  e+++   p +P ++++ ++ + +++      +
  EHT98093.1 650 RVLLAEDNLVNQKVARRLLERLGHHCEVVGDGQAaLDRWRAERWDILFIDLQMPEmdgeKAIQLLrqEEVLLGRPRQPAIVMTAHAMQGDRERclamgF 748
                 689999****************************55555567899999988887775543334331134455578888888888887722222455555 PP

        FleQ  88 igelelPlnYnqLtdl 103
                  g l+ P++++ L d 
  EHT98093.1 749 DGYLAKPVSQDALHDE 764
                 5667777777777665 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.4
        FleQ  14 dletiLeFlgeeveavsseelsaal 38 
                 +l  +L++l+ +   +++++l++ +
  EHT98093.1 841 RLAQLLQYLESQASSLEQHALKSLQ 865
                 5667788888888777777775544 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.36   5.8e+02       8      30 ..      10      32 ..       9      35 .. 0.91
   2 !   12.2   0.3   8.4e-05      0.14       8     113 .]     136     244 ..     122     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.36
                HHSSSEEEEEETTSBEEEECHHH CS
         PAS  8 eslpdpifvvDedgrilyvNaaa 30
                ++lp++i++ D+  r l +N++ 
  EHT98093.1 10 DALPCAIMIYDRAERLLAWNDKV 32
                579*****************975 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.4e-05
                 HHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCT..TSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEE.EETTEEE CS
         PAS   8 eslpdpifvvDedgrilyvNaaaeellGlsreevl..gkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspv.rdaggei 103
                 es++ +i+ +  +++ l vN++   + G sr+++    + ll l+heed+a l++++    ++ ++    ei++  +  + +++++    v + +++e 
  EHT98093.1 136 ESIRIGIWDWHVSHDSLQVNDTLLAMVGQSRSQWRypLRFLLNLVHEEDRASLRQAMMSSKQDHRPVFECEIRVLHQTEGWRWMLLSGQVVtLTIQQEA 234
                 78999**************************99862267799*******99999999999999999999999999888888888888765514667777 PP

                 EEEEEEEEES CS
         PAS 104 lgflgvlrdi 113
                   ++g+l+di
  EHT98093.1 235 ERVIGTLQDI 244
                 7999999997 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.1   1.8e+03       2      23 ..      10      31 ..      10      55 .. 0.89
   2 ?   10.8   0.2   0.00027      0.43      43     110 .]     179     249 ..     153     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
       PAS_4  2 dslpdalavldpdgrvlyaNaa 23
                d+lp+a+ + d+  r l++N  
  EHT98093.1 10 DALPCAIMIYDRAERLLAWNDK 31
                789*****************86 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00027
       PAS_4  43 llpeedaarleralrrvlegeepiefleelll..pgeerhyelrl..lPlrdesGevigvlvisrDiTerrr 110
                 l+ eed+a l++a+    + ++p++++e+++l    ++r+++l+   + l   + e+  v+++++DiT+r++
  EHT98093.1 179 LVHEEDRASLRQAMMSSKQDHRPVFECEIRVLhqTEGWRWMLLSGqvVTL-TIQQEAERVIGTLQDITRRKE 249
                 566779999*********************999*999******9986776.79****************985 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.34      22      84 ..     404     465 ..     384     491 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
  HATPase_c_3  22 vkievnknr.gktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAslsl 84 
                  v + ++    +++ +++i+D G G++ e+ +  ++  +++ +  ++ + +G  G+Gl  ++  +
   EHT98093.1 404 VLLAIEPAAsEDHWRFRIRDSGIGIPAEKQQAIFEAFSQADS--STTRRYGGTGLGLTISARLV 465
                  555555444245689*************99999987777777..57899*******98876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 6544.22
//
Query:       EHT98094.1  [L=731]
Description: beta-galactosidase/beta-glucuronidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-11   42.3   0.0    7.1e-10   39.5   0.0    2.2  2  Glyco_hydro_2    Glycosyl hydrolases family 2
    3.1e-07   29.8   0.4    3.6e-06   26.3   0.4    2.2  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
      1e-06   28.8   0.0    2.8e-06   27.3   0.0    1.7  1  Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding 
    1.7e-05   25.3   0.0    3.9e-05   24.2   0.0    1.6  1  Mannosidase_ig   Mannosidase Ig/CBM-like domain
  ------ inclusion threshold ------
      0.049   14.2   0.0       0.14   12.8   0.0    1.8  1  BetaGal_dom4_5   Beta-galactosidase jelly roll domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0     2e-13   7.1e-10       2     110 .]     193     306 ..     192     306 .. 0.89
   2 ?   -0.2   0.1      0.45   1.6e+03      31      53 ..     699     721 ..     686     730 .. 0.58

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 2e-13
                    ECCCEEEEEEEETC.SEEEEEEEEEEEEECSSSSCEEEEEEEEETTSTEEEE.EEEEEEEESTT-EEEEEEEEEES--BBEC...CCB--EEEEEE CS
  Glyco_hydro_2   2 hIedvfvttdlsdd.ksakvevevelendsdksvevtleteikdaegkkvke.essvlslgngetksiklelevknpklWsp...etPnLYtlkve 92 
                     I+ v +++d+ +  ++  +++e++++ +++ +++v+l++   +++g++ +     +l   +ge++s++ +l +k  klW+p   ++PnLY+++++
     EHT98094.1 193 TIDEVILRPDWREGlENPALSAEIRYRATTAGPATVRLTAAPDNFNGQTFQHdFPITLDHATGEQQSLRITLPMKGAKLWWPvgtGKPNLYRVRAS 288
                    68888899999988999999*****************************9995555555566666666689999999******************* PP

                    EEETTEEEEEEEEEE-B- CS
  Glyco_hydro_2  93 ldkdgkvidevstrfGfR 110
                    l++ +   d+  tr+G+R
     EHT98094.1 289 LRDSQGLMDTRVTRTGLR 306
                    *99999**********99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.45
                    SSSSCEEEEEEEEETTSTEEEEE CS
  Glyco_hydro_2  31 dksvevtleteikdaegkkvkee 53 
                    ++  +v+++++i++ +gk+v ++
     EHT98094.1 699 QNFHNVEIRYRIENQNGKTVGSN 721
                    34455666666666666665553 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.4     1e-09   3.6e-06       6     137 ..     315     445 ..     312     479 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1e-09
                      TEEEETTEEE-EEEEEE-S-BTTTBTS--HHHHHHHHHHHHHCT--EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT-CCCC CS
  Glyco_hydro_2_C   6 kllliNgkrllfkGvnrHedadrrGraideellvkDlkllkqlniNavRtsHYPnqeevyelcDeyGlyvidEanlethglaqklgeiepsynv 99 
                      k  liN++rl++kG n    ++  G +++ e+ ++D++l++++n+Na+R         +y+++De+Gl++ ++ +l+  g              
       EHT98094.1 315 KGWLINDRRLFIKGSNYI-GSPWLG-TMTREKYRRDFALVQAMNANAIRVHGHVAGRPLYDVADEMGLMIWQDVPLQ-WGYD------------ 393
                      55799*********9976.567778.5889999*****************9999999************99988874.3333............ PP

                      TTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESS................C CS
  Glyco_hydro_2_C 100 ladnpewlkavldrieelverdkNHpsviiWSlgNEs................g 137
                        d   +    + + +e+ve+  N p++i+W   NE+                +
       EHT98094.1 394 --DSAAFTDNAVRQTREMVEQFGNSPAIIVWGGHNEPpwnspwmekrfpdwnkT 445
                      ..33445666788899********************966555555555544443 PP

>> Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.9e-10   2.8e-06      32     133 ..      16     135 ..       9     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 7.9e-10
                      EEEECSCEGCGG....................SEEESSSTSS.TCTTBHHSS-CEEEEEEEEEE-HHHHHSEEEEEESEEESEEEEEETTEEEE CS
  Glyco_hydro_2_N  32 rtiavPsdwelq....................piytnveypidvdsadlptvngtgvYartfeidskwaekkvrllFegvtsasevwvngqevg 105
                      +++ +P  w+l                     + +++++ p ++ sa     +g  +Y+++f ++++  +    l+F+g++   +v +ng+ + 
       EHT98094.1  16 QAMDLPVTWSLAgnwrvhdandstfrgagvpaSDWRRLKVPANWYSAGYDH-QGALWYRHEFDLPESEPGTMATLVFDGIDYFADVTLNGKPLT 108
                      555555555555555555666666666666555677888899999988877.89**************************************** PP

                      EEE-TTS-EEEEGGGGS-SEEEEEEEEE CS
  Glyco_hydro_2_N 106 krqgsylpfefDltpylseGknriavkv 133
                      +++g ++ f +D++  l+  +n++a+ v
       EHT98094.1 109 HHEGYFQRFAVDVSSTLRR-HNQLAIRV 135
                      ***************9986.67888877 PP

>> Mannosidase_ig  Mannosidase Ig/CBM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.1e-08   3.9e-05       3      88 ..     646     723 ..     644     724 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
  Mannosidase_ig   3 levwvvsdllepv.qgtlelrlidltgkllaetsttpvtvgansstevaeidvdellaatggadpravvlvarledatgevlatnvy 88 
                     +++w+++d++++   ++l+++ i+ +g++la+ s + +t+++ s + v ei+v+        ++ ++v +++r+e+++g+++ +nv+
      EHT98094.1 646 VRLWAINDTWNACtACQLKWQ-ISQKGEVLAKGS-ETLTLPPDSGQMVKEITVT----P---QNFHNVEIRYRIENQNGKTVGSNVH 723
                     89********99989999999.588*********.******************9....6...89*****************999986 PP

>> BetaGal_dom4_5  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.8e-05      0.14      27     110 ..      61     137 ..      36     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.8e-05
  BetaGal_dom4_5  27 ssdygfhagvrlyrgtfdldlpsgldvslsltlsggtafrvsvwlNGyqlgsyvphigpqvtFpvpegilnyngenvlavlvda 110
                     s  y +h+g ++yr +f  dlp++   ++   + +g  + + v lNG+ l +++   g   +F v    +  +  n la+ vd+
      EHT98094.1  61 SAGY-DHQGALWYRHEF--DLPESEPGTMATLVFDGIDYFADVTLNGKPLTHHE---GYFQRFAVDVSSTLRR-HNQLAIRVDS 137
                     3444.8***********..9999976666655556678888**********955...5566787777766555.8888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4846.96
//
Query:       EHT98095.1  [L=445]
Description: putative pyrimidine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-96  322.5  56.5    2.9e-96  322.5  56.5    1.5  2  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
        1.9    8.6   3.9        2.6    8.2   0.3    2.9  2  Tom5             Mitochondrial import receptor subunit or tra


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.5  56.5  3.3e-100   2.9e-96       2     386 ..      31     401 ..      30     404 .. 0.95
   2 ?   -1.1   0.1     0.064   5.8e+02     334     356 ..     402     424 ..     398     436 .. 0.72

  Alignments for each domain:
  == domain 1  score: 322.5 bits;  conditional E-value: 3.3e-100
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-.........HHHHHH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsa.....edieiala 90 
                       ++++glQh++amf+a+v++Pll+g +           ++++l+sGi+tll++l++g+r+p++lgss afv++++  +G +     ++i++al+
       EHT98095.1  31 TTIVMGLQHTVAMFGATVLMPLLMGFD----------ANMAILMSGIGTLLFFLVVGGRVPSYLGSSAAFVGLVIAITGYSgqganPNIGVALG 114
                      589************************..........79*********************************88888886599999******** PP

                      HHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTT CS
  Xan_ur_permease  91 gllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsq 184
                      g++ ++l++ v+ ++++++g+r ++ rl+pPvvtg+vv+ iGl+la+ia+ +v++                ++av+++l+i +++vf++gl+++
       EHT98095.1 115 GIIACGLLYMVIGFIVMAVGTR-WIERLMPPVVTGAVVMAIGLNLAPIAIHSVSASS-----------FDSWMAVMTVLCIGSVAVFTRGLVQR 196
                      *********************9.*******************************995...........467*********************** PP

                      HHHHHHHHHHHHHHHHHH.......HTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHHH CS
  Xan_ur_permease 185 lpiLigiiagwllalfmg.......ivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlrr 271
                      l +L+g++a++l++++++        v++s  + +apwf  p     +tp f+++++l++ +va+++v+e++G+i+ava+++g++l+  p ++r
       EHT98095.1 197 LLLLLGLVAAYLIYMVITnglglgkPVDFSA-IAQAPWFGAP---TVTTPVFSAHAMLMIAPVAVILVAENLGHIKAVAGMTGKNLD--PYMGR 284
                      **************99986433434466666.*********9...569**************************************9..***** PP

                      HHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS- CS
  Xan_ur_permease 272 alladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdld 365
                      a+++dGlat+ls+  G+++vttyaeniGv+a+tk++s+ ++v a+vi+i+lg++pk++al+++IP+pvlgG+++vvfg+ia++g +++ ++ +d
       EHT98095.1 285 AFVGDGLATMLSASAGGTGVTTYAENIGVMAVTKIYSTLIFVAAAVIAIVLGFSPKFGALIHTIPGPVLGGASIVVFGLIAVAGARIWVQNHVD 378
                      ********************************************************************************************** PP

                      ..SHHHHHHHHHHHHHHHH---- CS
  Xan_ur_permease 366 ..sarnllivavslvlGlgvatv 386
                         + nl++vav+lvlG+g +t+
       EHT98095.1 379 lgLNGNLIMVAVTLVLGAGNFTL 401
                      *9*****************9987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.064
                      TS-HHHHHHHHHHHHHHHHHHHH CS
  Xan_ur_permease 334 sIPepvlgGvllvvfgmiaasgv 356
                      ++ ++ +gG+ +++fg i++ ++
       EHT98095.1 402 TLGSFSMGGIGTATFGAILLNAF 424
                      56667799999999999999886 PP

>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.3   0.00028       2.6      25      46 ..     146     167 ..     145     168 .. 0.91
   2 ?   -0.3   0.4      0.12   1.1e+03      26      39 ..     326     339 ..     320     340 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00028
        Tom5  25 vknfaaaaalLylsPfvidfvk 46 
                 v+ ++++a+ L l+P++i+ v+
  EHT98095.1 146 VTGAVVMAIGLNLAPIAIHSVS 167
                 6789***************986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
        Tom5  26 knfaaaaalLylsP 39 
                   +a++a++L +sP
  EHT98095.1 326 VAAAVIAIVLGFSP 339
                 45778888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2991.67
//
Query:       EHT98096.1  [L=180]
Description: putative oxidoreductase, flavin:NADH component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-31  108.6   0.2    3.6e-31  108.3   0.2    1.1  1  Flavin_Reduct  Flavin reductase like domain
  ------ inclusion threshold ------
       0.15   12.1   0.0       0.22   11.6   0.0    1.2  1  Vma12          Endoplasmic reticulum-based factor for assembl


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.2     4e-35   3.6e-31       1     154 [.      28     174 ..      28     175 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 4e-35
                    HTTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT CS
  Flavin_Reduct   1 mrrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees 96 
                    m ++ + v ++tt +  + ++g+t+s+++s++ +Pp+++++l+++ s + a+ +++++++n ls+ +++l + f++k++   d +  fa  +w + 
     EHT98096.1  28 MAHLGSAVNIITT-DGAGGRAGFTASAVCSVTDTPPTLLVCLNRAASVHAAFTQNQVLCVNTLSDGHASLSNLFGGKTP--MDAR--FAAADWASL 118
                    7788899******.8888889*******************************************************766..5677..********* PP

                    CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  97 ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                    +tg+p+l ++l+s++C + +   +g+h+++ +eVva++ +d+ +  +L+y++rry+ l
     EHT98096.1 119 ATGSPILTDVLVSFDCNITQITSVGTHDILFCEVVAIQRNDNGH--GLVYFDRRYHPL 174
                    *************************************9999855..8********976 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05      0.22      62     120 ..      14      74 ..       1      79 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
       Vma12  62 d..delt.aqelkevnrqlilvlNiliSvvavffavwialrsartpslpvrvllslvvallV 120
                       + +qe++++  +l + +Ni+ +  a + a++ a+      ++p  +l++l  a  V
  EHT98096.1  14 AkqAA-VeKQEFRDAMAHLGSAVNIITTDGAGGRAGFTASAVCSVTDTPPTLLVCLNRAASV 74 
                 22133.359**********************************999**********988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1282.16
//
Query:       EHT98097.1  [L=196]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-18   65.5   0.0    2.7e-17   63.3   0.0    1.8  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.11   12.0   0.0        4.9    6.7   0.0    2.0  2  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0     3e-21   2.7e-17       5     170 .]      18     174 ..      15     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 3e-21
                     -B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE--- CS
  Nitroreductase   5 rSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivivat 99 
                     r+++   d+pv++e+le+i + ar+ P++ n  p+r+v +q++++++kla+a+ + +lk++ +a      +        ++a+++    ++ + +
      EHT98097.1  18 RTHNGWLDKPVTHEQLETIYALARMGPTSANCSPVRIVFIQSQAAKEKLAPALSSGNLKKTLTAPVTAIIA-------WDPAFYELLPELFPSGD 105
                     8999999****************************************************999999888876.......55555555555555666 PP

                     TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase 100 ldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     +  + + ++  a ++a+ ++++ a  l++a+++lGl++ p++gfd+a+  v++ +  + +++   li +Gy
      EHT98097.1 106 ARSWFTSSPQLAHDTAFRNSSLQAAYLIMACRSLGLDTGPMSGFDNAK--VDETFLAQTGWKSNFLINIGY 174
                     6666777*****************************************..********99**********9 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00055       4.9     156     186 ..      29      59 ..      24      77 .. 0.83
   2 ?    3.5   0.0    0.0052        46      91     138 ..     132     180 ..     121     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00055
                     S-HHHHHHHHHHHTS--GGG----EEE.E-S CS
  TM1586_NiRdase 156 lpewfkeileaarlAPsAlNqqpwrfelkdd 186
                     + e++++i  +ar+ P++ N  p+r+ + ++
      EHT98097.1  29 THEQLETIYALARMGPTSANCSPVRIVFIQS 59 
                     578999999***************9986554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0052
                     HHHHHHHTT-EEEEES-.-SST...........T-S-EEEEE-BS---- CS
  TM1586_NiRdase  91 lvLkltalGlgtcWvgg.tykkkkakvelkkgeklvivIalGyaktklv 138
                     l++ + +lGl t  ++g   +k+++++ ++ g k   +I +Gy+++++ 
      EHT98097.1 132 LIMACRSLGLDTGPMSGfDNAKVDETFLAQTGWKSNFLINIGYGDSSKL 180
                     6788999999998775515667999999****************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1444.96
//
Query:       EHT98098.1  [L=279]
Description: putative hydrolase/acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-15   55.7   0.3    2.7e-11   43.6   0.4    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.8e-14   54.3   5.2    3.4e-14   54.0   5.2    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.9e-13   48.9   0.3    6.2e-13   48.6   0.3    1.1  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00074   19.4   0.0     0.0097   15.7   0.0    2.2  2  Abhydrolase_2  Phospholipase/Carboxylesterase
     0.0013   18.9   0.2     0.0025   18.0   0.2    1.7  1  Thioesterase   Thioesterase domain
     0.0029   16.3   0.0     0.0037   16.0   0.0    1.1  1  Ndr            Ndr family
  ------ inclusion threshold ------
      0.065   12.9   0.0        0.1   12.2   0.0    1.5  1  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.4     1e-14   2.7e-11       4     109 ..      16     114 ..      15     134 .. 0.87
   2 !   10.0   0.0   0.00019      0.49     206     252 ..     178     239 ..     153     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1e-14
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEE CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperVk 99 
                    v+l  ++g s+++++ +  p L  + f+v+++D+ G g S+         y++ ++ad l   l+ l++++ +lvGh +GG ++l++a++yp   +
     EHT98098.1  16 VVLSSGLGVSGSFWQ-LQLPVLT-QYFRVVIYDQHGTGLSQGTVP---AGYRMEDMADELAGMLNGLDIRRCHLVGHALGGIVGLHLALRYPALLQ 106
                    556678899999999.3444454.4*****************999...89********************************************** PP

                    EEEEESECSS CS
  Abhydrolase_1 100 alvllgaidp 109
                    +lv +++  +
     EHT98098.1 107 SLVVING--W 114
                    *****99..2 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00019
                    C...............THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 206 e...............lknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                                    l+ v+aptl +s  +D lvp++ + dla+ lp  ++ + + +gH  
     EHT98098.1 178 LlhrlqalmtsdlaasLDGVIAPTLALSCKDDLLVPWQRSADLAARLPLGEHQQMQYGGHAM 239
                    1444444555555555556999************************9998888888888876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   5.2   1.3e-17   3.4e-14       1     217 [.      16     247 ..      16     250 .. 0.64

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.3e-17
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTST.S-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhG.rsdpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla..... 86 
                    v+l  G+g s+s W   +L ++ l++ ++v+++D  G+G ++ + p +++    +++la +l++l  + ++ +lvGH lGG+++l+   la     
     EHT98098.1  16 VVLSSGLGVSGSFW---QLqLPVLTQYFRVVIYDQHGTGlSQGTVPAGYRMedmADELAGMLNGL--DIRRCHLVGHALGGIVGLH---LAlrypa 103
                    79999*********...4445667888999********976677887776622333335577777..69999**********9999...4444458 PP

                    ........EE.EEES-..----TTT........S----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHC..CCCHCHCCCGHHHHCCHHCHTTCCH CS
  Abhydrolase_6  87 ......lvvg.vlldppptalpagl........laaalelllallallrllawlsreplprlfladeda..daawrarlarlaallaglgllpaaa 165
                          ++ g   ld+   +++  +         + + ++++a +  l +  wls     + +l +e     a+++ +   l +l+a +    aa 
     EHT98098.1 104 llqslvVINGwATLDS---QTRRCFevrqnlllNSGVDAYVQAQPLFLYPGDWLS---EHEALLQEERQhqVAHFQGMENLLHRLQALMTSDLAAS 193
                    5444333333444444...333333322222223333333333333333345554...22255555551335555555555556666666777999 PP

                    HTT-TTGCEEE.CTT-CHHHHCHHCCCHSTTEEET....CE...SSS-HHHHSHHHH CS
  Abhydrolase_6 166 wadlpvpllvl.ggeDplvprllerllaqagarlp....vvlpgaGHlphleepdev 217
                    + ++ +p+l l +++D lvp  ++r +    arlp    + + ++GH++   +pd +
     EHT98098.1 194 LDGVIAPTLALsCKDDLLVP--WQRSAD-LAARLPlgehQQMQYGGHAMSVTDPDTF 247
                    99999999888789999***..889999.888888889999******6666699876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.3   2.4e-16   6.2e-13       6     221 ..      15     228 ..      10     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.4e-16
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                  +vvl+ Gl+  sg + +l      q f v+++D++G G s+g      +++d+ d la +++ +      +++ l+Gh +GG++ l+++lryp+ ++ 
   EHT98098.1  15 TVVLSSGLGV-SGSFWQLQLPVLTQYFRVVIYDQHGTGLSQGTVPAGYRMEDMADELAGMLNGLD----IRRCHLVGHALGGIVGLHLALRYPALLQS 107
                  6788888875.445555555555678***************9999999************98888....667999*********************** PP

  Hydrolase_4 104 lilsaPalkikaklkappllklllkllgkllpklqv....snnlkadslsrdpevvaayeadplvhgkitvrlllelldam.krleeraakitlPlll 196
                  l++++ +  ++++  ++++ ++ ++ll +   + +v          d+ls++++ +++ ++++  h++   +ll+ l  +m ++l ++ + + +P+l 
   EHT98098.1 108 LVVINGWATLDSQ--TRRCFEVRQNLLLNSGVDAYVqaqpLFLYPGDWLSEHEALLQEERQHQVAHFQGMENLLHRLQALMtSDLAASLDGVIAPTLA 203
                  ********99987..889999988888888888888443333355688888888888888887777777777777776655256777777777***** PP

  Hydrolase_4 197 lhGeaDkvvdpeasrelyerlgskd 221
                  l+ ++D +v+ + s++l++rl+  +
   EHT98098.1 204 LSCKDDLLVPWQRSADLAARLPLGE 228
                  ********************99754 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.095   2.4e+02       6      35 ..       5      34 ..       2      65 .. 0.77
   2 !   15.7   0.0   3.8e-06    0.0097      99     147 ..      74     122 ..      35     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.095
                   EE--SS---EEEEEE--TT--SHHHHHHHH CS
  Abhydrolase_2  6 vvspkdkaqavviflHGlGdsghawaeaak 35
                   v  ++++ + +v++  GlG sg  w +++ 
     EHT98098.1  5 VLGKDNADADTVVLSSGLGVSGSFWQLQLP 34
                   5667888999************99988765 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.8e-06
                    HTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTT CS
  Abhydrolase_2  99 kkgipssriiigGFSqGaalalylaltlpkklggivafsgalplsqkle 147
                     +g++  r  ++G   G++++l+lal +p  l+  v ++g++ l +++ 
     EHT98098.1  74 LNGLDIRRCHLVGHALGGIVGLHLALRYPALLQSLVVINGWATLDSQTR 122
                    5789999999********************************9988775 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   9.8e-07    0.0025       9     104 ..      21     115 ..      16     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.8e-07
                   TTCCSGGGHHHHHHCTTCEEEEEEECSTTST...SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESC CS
  Thioesterase   9 agGsasvfrslasklsdpvvevlavqlpgre...rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflids 102
                   + G + +f +l+    +++ +v+ + ++g +    + p+   +e++a+e+a +l+    +   +l+Gh lGg++   +A ++ +    ++sl++i +
    EHT98098.1  21 GLGVSGSFWQLQLPVLTQYFRVVIYDQHGTGlsqGTVPAGYRMEDMADELAGMLNGLDIR-RCHLVGHALGGIVGLHLALRYPAL---LQSLVVING 113
                   667888888888888888999999999999988666677789**************9999.9****************9998654...556666655 PP

                   CC CS
  Thioesterase 103 sa 104
                   +a
    EHT98098.1 114 WA 115
                   55 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-06    0.0037      81     223 ..      62     202 ..      32     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
                 -HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH.......TTTS-HHHHHHHHHS-HHHHHHT- CS
         Ndr  81 slddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagwvewakeKlsskllkkvgltdllkdlllahkFgkeeksens 179
                  ++d+ad+l  +l+ ++++    +G   G  + ++ al++p ++++lv in  ++ ++ + ++ e    +ll ++g+   ++   l  + g    +++ 
  EHT98098.1  62 RMEDMADELAGMLNGLDIRRCHLVGHALGGIVGLHLALRYPALLQSLVVINGWATLDSQTRRCFEVRQ-NLLLNSGVDAYVQAQPLFLYPGDWLSEHEA 159
                 49*****************************************************9999999988666.677788887777776666666666665655 PP

                 HHHHHHHHHHHT-TTHHHHHHHHHHHHT-------TTSSSS-EE CS
         Ndr 180 dlvreyrkllkerlnsknlelyleaynkRrdleierkklevkvl 223
                  l +e ++++++ ++ +nl + l+a++   dl  +++++  ++l
  EHT98098.1 160 LLQEERQHQVAHFQGMENLLHRLQALMT-SDLAASLDGVIAPTL 202
                 5666666778888888888888888775.577777666665555 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.1e-05       0.1     117     147 ..      82     112 ..      54     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfS 147
                 + ++G+ +GG + L+lal++p + +s  +  
  EHT98098.1  82 CHLVGHALGGIVGLHLALRYPALLQSLVVIN 112
                 779******************9887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1948.74
//
Query:       EHT98099.1  [L=128]
Description: hypothetical protein CKS_3207 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-31  108.3   0.0    2.7e-31  108.1   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   1.5e-35   2.7e-31       7     120 ..      14     125 ..      10     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 1.5e-35
                    TSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEE CS
  Ribonuc_L-PSP   7 aaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsav 102
                    ++ap++++  a+++vyvsG+lp+d++++ +  gd+++qtr++le +k+v+++ag +++dv + ++F++d++++ ++n+vyae+f+ +k  Par+++
     EHT98099.1  14 PLAPFVPGTLADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLEIIKNVIETAGGTMEDVTMNSIFITDWANYGAINQVYAEYFPGEK--PARFCI 107
                    689*********************7666666********************************************************8..****** PP

                    E-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 103 eVaaLpkgakvEIeaiav 120
                    ++  ++++a++EI +ia+
     EHT98099.1 108 QCGLVKPDALIEIATIAH 125
                    ****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 992.03
//
Query:       EHT98100.1  [L=249]
Description: putative amidohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-40  137.6   0.0    6.6e-40  137.1   0.0    1.2  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   3.7e-44   6.6e-40       1     173 [.      37     233 ..      37     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 3.7e-44
  Isochorismatase   1 talvviDmqndfv......eegvkeseeisavveninkllkaarkagipviftrdvhe.................leevkgdlderkaaphfkp 71 
                      tal+v+Dmqn ++      + ++ ++ + + v++ni+ +++aar+agi+vif++   +                      +  +++ + + + +
       EHT98100.1  37 TALIVVDMQNAYAsqggylDLAGFDVSATAPVIANIKVAIAAARAAGIKVIFFQNGWDnqyveaggagspnfhksNALKTMRKRPELMGKLLAK 130
                      8*****************999**********************************9999************998655566667778889999** PP

  Isochorismatase  72 gttgaelvpelaplegdvvvdKtrfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspel.hdaalkrlk 164
                      g ++ +lv+el+p++gd+v+ K r+s+f++t+ld +L++ gi ++v++Giat+vCVe+t rd++ l+y  vv++DA+    pe  ++aa+ +++
       EHT98100.1 131 GDWDYDLVDELQPQPGDIVLPKPRYSGFFNTQLDSLLRSYGIHHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFaQKAAIYNIE 224
                      ********************************************************************************************** PP

  Isochorismatase 165 qafatvitt 173
                        f++v  +
       EHT98100.1 225 TFFGWVSNV 233
                      *****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2186.28
//
Query:       EHT98101.1  [L=363]
Description: putative monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-70  236.6   0.4    5.6e-70  236.3   0.4    1.0  1  Bac_luciferase  Luciferase-like monooxygenase
  ------ inclusion threshold ------
      0.047   13.1   0.0       0.11   11.9   0.0    1.7  2  Copine          Copine


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.4   6.2e-74   5.6e-70       1     306 [.       1     317 [.       1     323 [. 0.96

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 6.2e-74
  Bac_luciferase   1 mefgvflptrqggalgaas.....aslrylvelaraaEelGfdavwvaehhggpgga.......ldaftllaalaaaTerirlgtavtplytrhP 83 
                     m++gvf+p+ ++g+l +++     ++++ ++ ++++aE++ fd+++ + +++g+gg+       +++ftl+a laa+T+ri+l +++ +l  + P
      EHT98101.1   1 MKIGVFIPIGNNGWLISETapqykPTFDLNKTIVQKAEHYHFDFALSMIKLRGFGGKtefwehnMESFTLMAGLAAVTSRIQLYATAATLV-MPP 94 
                     99*****************************************************************************************.*** PP

  Bac_luciferase  84 avlAqqaatLdhlsgGRfglglgtggpaveerrfGv.....dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaa 173
                     a++A++aat+d +s+GRfg++++tg++++e++++G+      + +ry++l E+v vlr lw +++ + +Geff++++++++prp+++   v++a+
      EHT98101.1  95 AIVARMAATIDSISNGRFGVNVVTGWQKPEYEQMGMwpgddYFTRRYDYLTEYVSVLRDLWGTGHCTLDGEFFKMDDCRVSPRPQSE-MKVICAG 188
                     ***************************************99********************77899******************887.99***** PP

  Bac_luciferase 174 aspaglelaarhadglllag...eppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagldfyaldsegagreaeaa 265
                      s+ag+++ arhad+ +++g   ++p + a +++r++++a++  r   d+  ++ ++vi+++t+e+Ara++ +l+    + a+ +++a+  ++ +
      EHT98101.1 189 QSDAGMAFSARHADFNFCFGkgvNTPTAFAPTAARMKKAAEAENR---DVSSYVLFMVIADETDEAARAKW-ELY---KAGADAEALAWLTDQSS 276
                     *********************************************...9*********************9.566...35678888888888888 PP

  Bac_luciferase 266 eiqeeedanlwagaadavpdelvaatalvGtpeqvaerlaa 306
                     ++++  +  + +++ad  ++ +++  +lvG+++ va  l++
      EHT98101.1 277 KDTQSGSDTNVRQMADPTSAVNINMGTLVGSWASVARMLDE 317
                     999999999999999999******************98876 PP

>> Copine  Copine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.54   4.8e+03     119     159 ..      96     134 ..      88     140 .. 0.63
   2 ?   11.9   0.0   1.3e-05      0.11      83     118 ..     212     247 ..     208     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.54
      Copine 119 vvtdmketidaivaAsklplSiiivGvGdadfekmrelddd 159
                 +v+ m++tid+i +  ++ + ++  G  + ++e+m +  +d
  EHT98101.1  96 IVARMAATIDSISN-GRFGVNVV-TGWQKPEYEQMGMWPGD 134
                 67788888888754.45555544.46666666666666555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.3e-05
      Copine  83 ygPTnfapviekvakiaeasakeasqYfvLliitDG 118
                   PT fap   ++ k aea++++ s+Y + ++i+D 
  EHT98101.1 212 NTPTAFAPTAARMKKAAEAENRDVSSYVLFMVIADE 247
                 57********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 3311.48
//
Query:       EHT98102.1  [L=229]
Description: TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-55  185.2   0.0    7.1e-55  184.9   0.0    1.1  1  TetR_C_3   YcdC-like protein, C-terminal region
    3.7e-14   52.3   0.1    6.2e-14   51.5   0.1    1.4  1  TetR_N     Bacterial regulatory proteins, tetR family
     0.0052   16.9   0.0     0.0097   16.0   0.0    1.5  1  TetR_C_29  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_3  YcdC-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.0   1.2e-58   7.1e-55       1     142 [.      86     227 ..      86     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 1.2e-58
                 HHHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSS-S--HHHHHHHHHH CS
    TetR_C_3   1 LesiletwlealkeleeeddPaealaayiraKleisrdkPeasrlfanEilqGapllkeelkeelkelvkekaaviqaWieegklakvdpkhLlfsiWa 99 
                 L+ +l+ wl++lk+l+ +++P+ea+++yir Kl +srd+P+asrlf++E++qGapllk+el + lk+lv+ek++vi+ Wi++ ++a+vdp +L+f++Wa
  EHT98102.1  86 LKGLLDIWLAPLKALQPDQHPLEAIREYIRLKLCVSRDHPQASRLFCLEMVQGAPLLKQELGGGLKTLVEEKCDVIRGWIKDERIAPVDPMQLIFMLWA 184
                 6789*********************************************************************************************** PP

                 HHHHHHHTHHHHHHHHS--TTSHHHHHHHHHHHHHHHHHHHS- CS
    TetR_C_3 100 lTqhYadfdvQveavtgkekldesdfdeaaetvtrlvlkgiep 142
                 +TqhYadf+vQvea+tgk+ +d ++fd++++++++++ +gi++
  EHT98102.1 185 TTQHYADFSVQVEAITGKTLSDPAFFDQTVKNLQHIITEGIQM 227
                 ****************************************986 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.1     1e-17   6.2e-14       1      45 [.      39      83 ..      39      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1e-17
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                I+ aA+e f+ +G+++t ++++A+rA vsk  l++yFp+Ke+L+ 
  EHT98102.1 39 IMTAALEFFSLYGFHGTRLEQVAERADVSKTNLFYYFPTKEALYI 83
                899****************************************87 PP

>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-06    0.0097       1     110 [.     106     212 ..     106     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHHHHHHTHHHHHHHH- CS
   TetR_C_29   1 PvealrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcffrvsnrhtlsalfg 99 
                 P ea+r+ ++      +++p++ rL + E ++ +  l   +++    ++l+e+  ++++   ++  + p vd+++l+++  + + ++      ++a+ g
  EHT98102.1 106 PLEAIREYIRLKLCVSRDHPQASRLFCLEMVQGAPLL--KQELGGGLKTLVEEKCDVIRGWIKDERIAP-VDPMQLIFMLWATTQHYADFSVQVEAITG 201
                 99***************************99999999..667777789999999999999999999999.***************************** PP

                 --TTSHHHHHH CS
   TetR_C_29 100 rdlsspealer 110
                 + ls+p+  ++
  EHT98102.1 202 KTLSDPAFFDQ 212
                 *****987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1969.57
//
Query:       EHT98103.1  [L=251]
Description: ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-36  125.8   0.0    2.4e-36  125.3   0.0    1.2  1  ABC_tran     ABC transporter
    1.1e-12   48.4   0.0    5.8e-06   26.3   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    9.4e-11   41.6   0.1    3.7e-10   39.6   0.1    1.8  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00012   22.5   0.2    0.00029   21.2   0.2    1.7  1  AAA_16       AAA ATPase domain
    0.00029   20.5   0.0    0.00058   19.6   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00051   19.8   0.3     0.0031   17.2   0.3    2.0  1  AAA_30       AAA domain
    0.00061   20.1   0.2     0.0035   17.6   0.2    2.1  1  AAA_22       AAA domain
    0.00072   19.4   0.0      0.032   13.9   0.0    2.0  2  AAA_15       AAA ATPase domain
      0.001   19.0   0.1     0.0023   17.9   0.1    1.6  1  RsgA_GTPase  RsgA GTPase
     0.0011   19.6   0.0     0.0025   18.4   0.0    1.5  1  AAA_23       AAA domain
     0.0013   17.5   0.0      0.036   12.7   0.0    2.0  2  AAA_13       AAA domain
     0.0047   17.1   0.1     0.0096   16.1   0.1    1.8  1  AAA_33       AAA domain
  ------ inclusion threshold ------
      0.018   15.5   0.0        1.5    9.3   0.0    2.3  2  AAA          ATPase family associated with various cellular a
      0.027   14.1   0.0       0.16   11.5   0.0    2.1  2  AAA_25       AAA domain
      0.034   14.1   0.0       0.12   12.3   0.0    1.9  2  AAA_5        AAA domain (dynein-related subfamily)
      0.036   12.9   0.1        3.9    6.1   0.0    2.8  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.038   13.2   0.2       0.13   11.5   0.2    1.9  1  NB-ARC       NB-ARC domain
      0.044   13.5   0.0      0.096   12.4   0.0    1.5  2  IstB_IS21    IstB-like ATP binding protein
      0.048   14.2   0.2       0.09   13.3   0.2    1.6  1  AAA_18       AAA domain
        0.1   12.5   0.0       0.19   11.7   0.0    1.4  1  Rad17        Rad17 P-loop domain
       0.11   12.8   0.1        1.4    9.2   0.1    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.11   12.1   0.1       0.29   10.8   0.0    1.7  2  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.0   2.9e-39   2.4e-36       1     137 []      17     165 ..      17     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 2.9e-39
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 lk vs+ ++ege+v +vG++G+GKSt+l+++ gl++ ++G+i++ ++++++  ++++ lr++ig+++q  +lfp+ +v en              ++++
  EHT98103.1  17 LKGVSFRVEEGEVVCLVGPSGSGKSTVLRCINGLETYESGTIRVLDQHVDSksKRINALRRQIGMVFQRFNLFPHRSVLENvmegpiyvngetrsKAEK 115
                 799***************************************9998877776699***********************************966544444 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++++l+++gl +    +v+  ps+LSgGq+qrva+ar+l+ +pk +l+DEpt+
  EHT98103.1 116 MAKELLERVGLGD----KVSAWPSQLSGGQQQRVAIARTLALQPKAILFDEPTS 165
                 4677777777666....666678*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.9e-07    0.0004       2      47 ..      30      63 ..      29      89 .. 0.74
   2 !   26.3   0.0   7.1e-09   5.8e-06     235     297 ..     135     194 ..     109     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.9e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkips 47
                 +l+Gp gsGKS++L+++ +l            e   +g+ir+ + 
  EHT98103.1 30 VCLVGPSGSGKSTVLRCINGL------------ETYESGTIRVLDQ 63
                68*****************99............3444444444444 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 7.1e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++lS G+++  a++  l+ ++   + +l+DEp + L+P+l+ ++l+++++l++ g   i++TH
  EHT98103.1 135 SQLSGGQQQRVAIARTLALQP---KAILFDEPTSALDPELVGEVLQVMRNLAQQGMTMIVVTH 194
                 578888888867777777766...67***************************9********* PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   4.5e-13   3.7e-10      25     205 ..      28     202 ..      18     215 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 4.5e-13
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                 ++ ++vGp GSGKs +l  i   L + ++ ++r   l++ + +++++ ++ + ++ ++f+  +   + +  e +++  ++ +ge++ k ++        
  EHT98103.1  28 EVVCLVGPSGSGKSTVLRCIN-GLETYESGTIR--VLDQHVDSKSKRINALRRQIGMVFQRFNLFPHRSVLENVMEGPIYVNGETRSKAEKMA------ 117
                 57899***************4.44434444555..4666677778889999999****99998874444444445555555555444444444...... PP

                 HHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka 205
                 +elle++g+  +      +LSgG+++ va+a  +A+q    ++  l+De  +aLD + v +v +++++  ++ + +iv++++ ++ +++
  EHT98103.1 118 KELLERVGLGDKvsawpsQLSGGQQQRVAIARTLALQP---KA-ILFDEPTSALDPELVGEVLQVMRNLAQQgMTMIVVTHEMQFAREV 202
                 555666666555555555****************9975...44.589********************99888799******99988765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   3.6e-07   0.00029      20      63 ..      25      68 ..      15     219 .. 0.52

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.6e-07
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd.g.giflrgkcdql 63
                 +g  e+v l+G+sG+GKs+++r++    + + g + +l ++ d+ 
  EHT98103.1 25 EEG--EVVCLVGPSGSGKSTVLRCINGLETYEsGtIRVLDQHVDSK 68
                444..89*****************9953333333244455555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.1e-07   0.00058      14      39 ..      19      44 ..      15      50 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.1e-07
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                g ++++++ +++ l+GpsGsGKST+l
  EHT98103.1 19 GVSFRVEEGEVVCLVGPSGSGKSTVL 44
                5678888666**************98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   3.8e-06    0.0031      17      52 ..      26      61 ..      20     200 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.8e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrvigl 52
                +  v++l+Gp G+GK+t+l+ ++ + + + g++ +l
  EHT98103.1 26 EGEVVCLVGPSGSGKSTVLRCINGLETYESGTIRVL 61
                45699*****************88777775555544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   4.3e-06    0.0035       5      70 ..      27     130 ..      23     200 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.3e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...............................erpevv........fvtlpsstsskdllrellral 64 
                   +++++G+sG+GK+t+lr +    + +++ +                                ++++v+        +v+    ++ +++++ell+ +
  EHT98103.1  27 GEVVCLVGPSGSGKSTVLRCINGLET-YESGTIrvldqhvdskskrinalrrqigmvfqrfnlfPHRSVLenvmegpiYVNGETRSKAEKMAKELLERV 124
                 56789**************9987754.322222466666666666666666666666666666544444455555533333333335555666666666 PP

      AAA_22  65 glelka 70 
                 gl+ k 
  EHT98103.1 125 GLGDKV 130
                 655444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.9e-05     0.032      23      83 ..      28      83 ..      17     124 .. 0.70
   2 ?    3.7   0.0     0.049        40     299     365 ..     139     195 ..      98     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
      AAA_15 23 eeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef 83
                e + +l+G+ +sGKS++l+ ++ + +    +++ +i + ++ ++ + ++ +  + +I + f
  EHT98103.1 28 E-VVCLVGPSGSGKSTVLRCINGLET----YESGTIRVLDQHVDSKSKRINALRRQIGMVF 83
                3.99*****************55544....4467777888888887777777777777777 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.049
      AAA_15 299 sGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                  G+q+ + ++  ++   k          +l++EP   L p++  ++ + +++la+++    i+ TH 
  EHT98103.1 139 GGQQQRVAIARTLALQPKA---------ILFDEPTSALDPELVGEVLQVMRNLAQQGM-TMIVVTHE 195
                 5666666666555555555.........99***************************7.89999995 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.8e-06    0.0023      95     131 ..      22      59 ..       7      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.8e-06
                  HHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  95 ellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                   ++++ ++++lvG+SG GKSt++  +++ ++ + g ++
   EHT98103.1  22 FRVEEgEVVCLVGPSGSGKSTVLRCINGLETYESGTIR 59 
                  5555559******************9998777777765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     3e-06    0.0025      18      40 ..      26      48 ..       9      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-06
      AAA_23 18 skgltlItGpNGaGKTTildAik 40
                +  +++++Gp G+GK+T+l++i 
  EHT98103.1 26 EGEVVCLVGPSGSGKSTVLRCIN 48
                45689****************96 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.039        32      23      57 ..      34      62 ..      31     144 .. 0.65
   2 !   12.7   0.0   4.5e-05     0.036     526     580 ..     154     205 ..     143     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.039
      AAA_13 23 GwNGaGKTtLSrllrslelgetepkfangsieitn 57
                G  G+GK+t+ r ++ le+      +++g+i++  
  EHT98103.1 34 GPSGSGKSTVLRCINGLET------YESGTIRVLD 62
                777*************965......6666664433 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.5e-05
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 + k + +D P S LD + +  v   +++ +   ++   +++ TH ++f +ev ++
  EHT98103.1 154 QPKAILFDEPTSALDPELVGEVLQVMRNLA---QQGMTMIVVTHEMQFAREVADR 205
                 67889************************9...888899************9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.2e-05    0.0096       1      19 [.      29      47 ..      29     207 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +v lvG++GsGKst+++ +
  EHT98103.1 29 VVCLVGPSGSGKSTVLRCI 47
                799************9976 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0018       1.5       1      20 [.      30      49 ..      30      95 .. 0.69
   2 ?    4.2   0.0     0.069        56      31     112 ..     126     196 ..     105     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
                EEEESSTTSSHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavak 20
                v+l+Gp G GK+++ + +  
  EHT98103.1 30 VCLVGPSGSGKSTVLRCING 49
                79************998855 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.069
                 TTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  31 gsellskyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrp 112
                 + + +s + ++ +   ++ ++ a++ a +p+ +++DE  +    +          +v + l+++ ++ ++   +++i++t+++
  EHT98103.1 126 LGDKVSAWPSQLSGGQQQRVAIARTLAlQPKAILFDEPTSALDPE----------LVGEVLQVMRNLAQQ--GMTMIVVTHEM 196
                 4555566888888888899999999999999******98887777..........888888888888884..47888888776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.16      30      50 ..      24      44 ..      16      47 .. 0.90
   2 ?   -0.1   0.0       0.7   5.7e+02     164     188 ..     171     194 ..     103     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_25 30 lpagelallaGapgtGKttla 50
                + +ge++ l+G++g+GK+t++
  EHT98103.1 24 VEEGEVVCLVGPSGSGKSTVL 44
                579****************86 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.7
      AAA_25 164 dvgalvealeriarrtgaavllvhH 188
                  vg++++ ++++ ++ g + ++v H
  EHT98103.1 171 LVGEVLQVMRNL-AQQGMTMIVVTH 194
                 357777788887.477888888877 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.12       2      19 ..      30      47 ..      29      68 .. 0.88
   2 ?   -1.3   0.0       2.4     2e+03      66      90 ..     156     180 ..     133     219 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                EEEE--SSSSHHHHHHHG CS
       AAA_5  2 vlLvGppGtgKselaerl 19
                v+LvGp+G+gKs++ + +
  EHT98103.1 30 VCLVGPSGSGKSTVLRCI 47
                8************99866 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
                 -SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5  66 geilvlDEveraesevlnsLlslle 90 
                 ++il+++    +++e ++++l+++ 
  EHT98103.1 156 KAILFDEPTSALDPELVGEVLQVMR 180
                 3444333333334666666666654 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.041        33     242     265 ..      24      48 ..      15      51 .. 0.87
   2 ?    6.1   0.0    0.0048       3.9     323     353 ..     137     167 ..     128     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.041
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 + +G v+ +vG+   GKsT L+ ++
  EHT98103.1  24 VEEGeVVCLVGPSGSGKSTVLRCIN 48 
                 56778999*************9986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0048
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAt 353
                  SG   q ++i++ l ++ k++L+DE tsA 
  EHT98103.1 137 LSGGQQQRVAIARTLALQPKAILFDEPTSAL 167
                 59999999*********************95 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00015      0.13      16      72 ..      25      79 ..      13     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                TTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXX CS
      NB-ARC 16 delqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeileti 72
                +e +  vv lvG  G+GK+t+++ i+       g+  ++ + v sk+  ++ + ++i
  EHT98103.1 25 EEGE--VVCLVGPSGSGKSTVLRCINGLETYESGTIRVLDQHVDSKSKRINALRRQI 79
                4555..9***************99986633333344455555555555555555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012     0.096      35      70 ..      14      51 ..       7      79 .. 0.78
   2 ?   -3.2   0.0       7.1   5.8e+03     121     149 ..     166     196 ..     142     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
   IstB_IS21 35 vkeLatlsf.iekkenivllGpsGvGKsh.laialgve 70
                v+ L + sf +e+ e ++l+GpsG GKs  l +  g e
  EHT98103.1 14 VEVLKGVSFrVEEGEVVCLVGPSGSGKSTvLRCINGLE 51
                56678888878999*************85144444555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.1
   IstB_IS21 121 pldqaeaellfeviekryer..rsiiitsnl 149
                  ld +   ++++v+ +  ++  + i++t ++
  EHT98103.1 166 ALDPELVGEVLQVMRNLAQQgmTMIVVTHEM 196
                 4555555566666665554411334455555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   0.00011      0.09       1      22 [.      30      51 ..      30     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                ++l G++G+GK+t+ + ++ ++
  EHT98103.1 30 VCLVGPSGSGKSTVLRCINGLE 51
                79************99875554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.19      23      65 ..       7      47 ..       2      63 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
       Rad17 23 vhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvL 65
                vhk+   +v e lk  +   ++ +++ + GPsG gkstv++ +
  EHT98103.1  7 VHKR-FGAV-EVLKGVSFRVEEGEVVCLVGPSGSGKSTVLRCI 47
                5554.3444.45777777777778999************9976 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0017       1.4      63      89 ..     154     180 ..     113     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0017
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 +++ +++DE  s lD+e + ++l++++
  EHT98103.1 154 QPKAILFDEPTSALDPELVGEVLQVMR 180
                 47889*****************99987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.29       4      22 ..      29      47 ..      26      78 .. 0.87
   2 ?   -2.2   0.1       3.5   2.8e+03     110     133 ..     174     197 ..     171     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++++Gpsg+GK+t+++ +
  EHT98103.1 29 VVCLVGPSGSGKSTVLRCI 47
                69************99866 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.5
      AAA_24 110 efrrllkklqelrknvifiahekt 133
                 e+ +++++l + + + i++ he +
  EHT98103.1 174 EVLQVMRNLAQQGMTMIVVTHEMQ 197
                 678899999999998888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 1875.09
//
Query:       EHT98104.1  [L=216]
Description: membrane component of an ABC superfamily polar amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-23   83.2  10.0    2.5e-23   82.8  10.0    1.2  1  BPD_transp_1  Binding-protein-dependent transport system inne
     0.0022   18.1   0.3     0.0086   16.2   0.3    2.1  1  DUF2534       Protein of unknown function (DUF2534)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8  10.0   2.8e-27   2.5e-23       2     184 ..      32     213 ..      31     214 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 2.8e-27
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   ++lG++ a   + + k++++ ++++i+++++lP++v+++ +++vf  ++i  +++ + +i +++ +  +   i+r++++s+++++ eaar +G+s +
    EHT98104.1  32 TPLGLIFAaakMCPFKIISWPVSVIINITRALPMIVVLFYIYFVFPDIGITLTSFQASVIGIAFCFSTFLAEIFRSGIESVDRGQLEAARSMGMSFF 128
                   6899999999*************************************************************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   + +r+v+lP+a+ ++++   ++++ +l++++l+++++    ++ ++ + +l    ++ + +++  +++++l l+  + +++r+l+ r +
    EHT98104.1 129 KAMRRVILPQAFHVALPPYSNTLVMMLKDSALASTIA----VTEMTRQGQLLAASTFDNTTVYTLVALLYLTLCMPLLAFTRHLENRQK 213
                   *************************************....**********9999999989999*********************9976 PP

>> DUF2534  Protein of unknown function (DUF2534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   9.6e-07    0.0086      50      79 ..      12      41 ..       2      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.6e-07
     DUF2534 50 fliqgamvavYslvftvllsiPlafyfLge 79
                fl+qga +++Y +  ++l+s Pl+++f ++
  EHT98104.1 12 FLLQGAEMTIYITLLSLLISTPLGLIFAAA 41
                99*************************776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1686.33
//
Query:       EHT98105.1  [L=250]
Description: substrate-binding component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-55  188.5   0.1    1.3e-55  188.3   0.1    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    2.7e-07   30.8   0.0    1.2e-05   25.4   0.0    2.4  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3   0.1   1.4e-59   1.3e-55       1     223 [.      27     248 ..      27     250 .] 0.95

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 1.4e-59
                 EEEEE-S-BTTTBEE-T.TS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHG CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykde.ngeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdask 98 
                 l+ g+ ++++P ++ d+ +g+++Gf +d+a ++akr+++++ f+ v++++li+++ +gk+D+++a++t tpeRe++++Fsqp    g +l+vr+ d++ 
  EHT98105.1  27 LTAGSPPSSAPTTFLDTkTGKIEGFMPDVAAEVAKRQKLDINFTAVPFSTLIQSVIAGKIDMIVAGMTPTPEREKRIAFSQPVTAFGPGLVVRD-DNK- 123
                 6789999*************************************99***********************************************5.444. PP

                 TCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE..ECGGCECEEEEEEETTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
   SBP_bac_3  99 issiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv..eeplsseeyaiavrkgd 195
                  + ++s +dLkg  vg++ag+ + ++l ++     e++++d+ ++++++L+ gr+ a ++d p+++y  k  + k  ++v  ++p   ++ a++v+kg+
  EHT98105.1 124 -KVYRSQQDLKGDIVGTMAGTDYTQALIKSGI-AKEVKVYDSPADMMRDLSLGRIAAGMNDYPIMKYQEKSGAYKGMHVVdgYKPEHIAPMAFGVKKGN 220
                 .6777778************999988777444.678999************************************************************ PP

                 HHHHHHHHHHHHHHHHTTHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 196 seLrkainkalaelkadgtlakisekWf 223
                 ++L++ in al ++kadgtl+ki++kW+
  EHT98105.1 221 DKLLADINTALTAMKADGTLQKIKAKWG 248
                 ***************************6 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-09   1.2e-05      29     112 ..      49     119 ..      27     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-09
                      ESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEE CS
  Lig_chan-Glu_bd  29 eGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilik 112
                      eGf+ d+  e+ak+ +++ +++ v+              + +i++++++k+d++va +t t+eRe+ + F++p    g  ++++
       EHT98105.1  49 EGFMPDVAAEVAKRQKLDINFTAVP-------------FSTLIQSVIAGKIDMIVAGMTPTPEREKRIAFSQPVTAFGPGLVVR 119
                      5555555555555555555555444.............3459*******************************99999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2057.36
//
Query:       EHT98106.1  [L=201]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-14   51.5   0.1    1.2e-13   50.5   0.0    1.6  2  Cupin_2       Cupin domain
    2.2e-13   50.0   0.1    3.8e-13   49.3   0.1    1.4  1  HTH_3         Helix-turn-helix
    5.8e-10   39.4   0.2    5.7e-09   36.2   0.0    2.1  2  HTH_31        Helix-turn-helix domain
    1.9e-09   37.4   0.2    2.9e-09   36.8   0.2    1.3  1  HTH_19        Helix-turn-helix domain
    0.00054   20.3   0.0    0.00086   19.7   0.0    1.3  1  HTH_26        Cro/C1-type HTH DNA-binding domain
     0.0016   18.2   0.2     0.0035   17.2   0.2    1.5  1  HTH_25        Helix-turn-helix domain
      0.002   17.6   0.1     0.0076   15.7   0.1    2.0  1  Sigma70_r4    Sigma-70, region 4
  ------ inclusion threshold ------
      0.031   14.2   0.0       0.11   12.4   0.0    1.8  2  AraC_binding  AraC-like ligand binding domain
      0.036   14.0   0.1      0.077   12.9   0.1    1.6  1  MarR          MarR family
      0.062   13.5   0.0       0.13   12.5   0.0    1.5  1  CENP-C_C      Mif2/CENP-C like
      0.082   12.5   0.3       0.14   11.7   0.3    1.4  1  HTH_24        Winged helix-turn-helix DNA-binding
       0.09   12.8   0.1       0.15   12.1   0.1    1.3  1  HTH_6         Helix-turn-helix domain, rpiR family
      0.092   12.4   0.0       0.38   10.5   0.0    1.9  2  Cupin_3       Protein of unknown function (DUF861)
       0.16   11.8   0.1       0.33   10.8   0.1    1.5  1  TetR_N        Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.7   8.5e+03      50      57 ..      84      91 ..      80      98 .. 0.65
   2 !   50.5   0.0   9.7e-17   1.2e-13       3      70 ..     125     192 ..     123     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.7
                -TT-EEEE CS
     Cupin_2 50 pagtpHrf 57
                 +g +H++
  EHT98106.1 84 RPGAEHYV 91
                45666665 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 9.7e-17
                 EEEETTE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   3 velppGe.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 +++pp + s+++ +  ge   ++V eG+++l+v+ge + +eaGds+ f+++ pH++ N++d++ar+l++
  EHT98106.1 125 ISIPPRTrSEEMLTGIGE-KAGVVMEGRLTLEVNGEATFIEAGDSFQFKSHLPHNIFNDSDTEARVLWI 192
                 567888855555557788.99***********************************************9 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1     3e-16   3.8e-13       1      53 [.      22      74 ..      22      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 3e-16
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                lk++Rk ++++++ LAe ++vs  +is+iE++ +nP++++l+ l  +L+v+l+
  EHT98106.1 22 LKQIRKSRNMTIKALAEQANVSAGAISQIERNLANPTVRVLEQLRVVLNVPLT 74
                8**************************************************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   4.5e-12   5.7e-09       2      58 ..      18      73 ..      17      79 .. 0.94
   2 ?    0.9   0.0      0.46   5.8e+02       5      18 ..      90     110 ..      89     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.5e-12
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldp 58
                +G +L++ R+ ++++ +++Ae+++vs+  +s++E+    +p+ +vle+l  +l+++ 
  EHT98106.1 18 IGLRLKQIRKSRNMTIKALAEQANVSAGAISQIERNLA-NPTVRVLEQLRVVLNVPL 73
                699***********************************.6*********99999985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.46
      HTH_31   5 lLralRera.......GLsqe 18 
                 ++r++Rer        G++++
  EHT98106.1  90 YVRRWRERPhfevgrqGITKA 110
                 68*****98777777677666 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.2   2.2e-12   2.9e-09       3      64 ..      21      81 ..      19      82 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.2e-12
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllqged 64
                rLk++R+ +++t+++lae++ +s + is+iE +   +p+ ++l ++   l+++l+++l +++
  EHT98106.1 21 RLKQIRKSRNMTIKALAEQANVSAGAISQIERNLA-NPTVRVLEQLRVVLNVPLTAFLEQNE 81
                9*********************************9.*********************98876 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.7e-07   0.00086       1      55 [.      21      74 ..      21      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.7e-07
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpg 55
                +L+++ + r++t++ La+++++sa+ +s +  +   +++  +L+ +  +L++ + 
  EHT98106.1 21 RLKQIRKSRNMTIKALAEQANVSAGAISQIERNL-ANPTVRVLEQLRVVLNVPLT 74
                799******************************5.7**************99876 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   2.7e-06    0.0035       1      33 [.      21      53 ..      21      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEed 33
                rL++ R++r+++++++a++ ++++  + ++E++
  EHT98106.1 21 RLKQIRKSRNMTIKALAEQANVSAGAISQIERN 53
                79*****************************86 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.9e-06    0.0076      18      43 ..      28      53 ..      20      55 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.9e-06
                TTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4 18 geglTleEIgerlgiSrerVrqiekr 43
                 +++T + ++e+ ++S ++++qie++
  EHT98106.1 28 SRNMTIKALAEQANVSAGAISQIERN 53
                689*********************85 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.2   2.8e+03      63      80 ..     114     131 ..     112     139 .. 0.81
   2 ?   12.4   0.0   8.6e-05      0.11      27      74 ..     145     192 ..     145     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.2
                   E-TTSEEEEEEEEE---G CS
  AraC_binding  63 sdsedgweyrwlyfegel 80 
                   +++e+++++++++++++ 
    EHT98106.1 114 PSGEHDIQFMYISIPPRT 131
                   788999999999999975 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.6e-05
                   EEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE CS
  AraC_binding  27 hyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwl 74 
                   ++v+eG+ +l++ng+   +++Gd f ++ + pH +  ds+ + +  w+
    EHT98106.1 145 GVVMEGRLTLEVNGEATFIEAGDSFQFKSHLPHNIFNDSDTEARVLWI 192
                   589********************************9999998888887 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     6e-05     0.077       9      39 ..      22      52 ..      15      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
                HHHHHHSTTEEHHHHHHHHTS-HHHHHHHHH CS
        MarR  9 LrilyeqgplsvseLakklgvskstvtrvld 39
                L +++ + +++++ La++ +vs ++++ + +
  EHT98106.1 22 LKQIRKSRNMTIKALAEQANVSAGAISQIER 52
                78899*********************98755 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.8e-05      0.13      39      82 ..     147     190 ..     143     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.8e-05
                 EEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEE CS
    CENP-C_C  39 ViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeaklf 82 
                 V++Gr+  +v+++   i  g++Fq  +    +i N++++ea+++
  EHT98106.1 147 VMEGRLTLEVNGEATFIEAGDSFQFKSHLPHNIFNDSDTEARVL 190
                 99***************************************986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00011      0.14       9      36 ..      22      49 ..      22      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      HTH_24  9 LelLqknprisqreLAerlglSpstvnr 36
                L+ ++k  +++++ LAe+ ++S +++++
  EHT98106.1 22 LKQIRKSRNMTIKALAEQANVSAGAISQ 49
                678899999****************987 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00012      0.15      26      58 ..      22      54 ..       6      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                HH-S---TT--HHHHHHHTT--HHHHHHHH--- CS
       HTH_6 26 laspdkaielsikalAkaaavSeativrfakkL 58
                l++  k+++++ikalA++a+vS  +i ++ + L
  EHT98106.1 22 LKQIRKSRNMTIKALAEQANVSAGAISQIERNL 54
                67788999***************9998877765 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   1.3e+03      13      40 ..      82     109 ..      81     122 .. 0.78
   2 ?   10.5   0.0    0.0003      0.38      30      59 ..     146     174 ..     134     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
                 EEECEEEEECESSEEEEEEEECEEEEEE CS
     Cupin_3  13 ectpGkfrltyeedEfcyileGevkvtp 40 
                 e+ pG  + +  + E  ++  G+  +t 
  EHT98106.1  82 EMRPGAEHYVRRWRERPHFEVGRQGITK 109
                 6789999999999999999999877766 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0003
                 EEEECEEEEEETTTEEEEEETTEEEEE-TT CS
     Cupin_3  30 yileGevkvtpeggetvelraGDlvvlpkg 59 
                  ++eG+ ++++ +ge+  ++aGD++ ++  
  EHT98106.1 146 VVMEGRLTLEV-NGEATFIEAGDSFQFKSH 174
                 699********.*************99865 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00026      0.33      16      33 ..      30      47 ..      28      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
                T--HHHHHHHHTSSHHHH CS
      TetR_N 16 attvreIAkrAGvskgal 33
                ++t++++A++A+vs+ga+
  EHT98106.1 30 NMTIKALAEQANVSAGAI 47
                689**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1737.72
//
Query:       EHT98107.1  [L=442]
Description: FAD dependent oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-68  231.2   0.5    3.5e-68  230.8   0.5    1.2  1  DAO            FAD dependent oxidoreductase
    1.1e-07   32.0   0.2    1.5e-06   28.3   0.1    2.8  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      5e-07   29.2   7.1    2.9e-05   23.4   7.1    2.1  1  FAD_binding_2  FAD binding domain
    6.1e-05   22.4   0.1    0.00012   21.4   0.1    1.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    6.9e-05   22.1   0.1    0.00013   21.2   0.1    1.4  2  GIDA           Glucose inhibited division protein A
    0.00011   21.6   2.3    0.00091   18.6   1.6    2.2  2  FAD_binding_3  FAD binding domain
    0.00016   21.0   1.8    0.00019   20.7   0.5    1.7  2  Thi4           Thi4 family
    0.00032   20.2   0.1     0.0005   19.5   0.1    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0051   15.6   4.5     0.0099   14.6   1.0    2.5  3  HI0933_like    HI0933-like protein
      0.009   15.1   0.1      0.015   14.4   0.1    1.4  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.034   14.0   0.2      0.058   13.3   0.2    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.036   13.3   0.0       0.12   11.5   0.1    1.7  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.046   14.2   0.0      0.079   13.4   0.0    1.3  1  NAD_binding_7  Putative NAD(P)-binding
      0.047   14.2   2.4       0.12   13.0   2.4    1.7  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.078   12.3   0.3       0.13   11.5   0.3    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.23   11.1   0.5       0.39   10.4   0.5    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.8   0.5   3.1e-71   3.5e-68       1     352 []      19     412 ..      19     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 230.8 bits;  conditional E-value: 3.1e-71
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 dvv+iGGGi+G stAyeLa++g  V+l+ekg iag ++Sgrn+g+++++ r+l e   l +++ ++l++++el++e g+d+++rr+G l+ + +e++l+
  EHT98107.1  19 DVVVIGGGIVGTSTAYELAKQGvsVALFEKGVIAG-EQSGRNWGWVRQQNRDLHE---L-PMAMRSLQRWDELSGEIGMDLGFRRSGILYGTLNEADLA 112
                 9******************************7777.**************99994...4.*******************************999999** PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEE CS
         DAO  98 aldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaada 195
                 +++k+ +++++ g  ++ll+a+e++e+     +++g++++p++g+++p ++++a+a+ a++lG+ i++++ v++l+   g v+gv   t+ g + +a  
  EHT98107.1 113 RWEKWGQQAKQIGFTSQLLSAREAQERIGDKTPWRGGVWSPTDGRAEPSQAVPAIAKGAQKLGASIFQRCAVRALDISAGHVSGV--WTErGLV-KASR 208
                 **99999999999999*****99*****86449******************************************998899****..6666986.4577 PP

                 EEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..EEETTTTEEEEEE................................ CS
         DAO 196 vVnaaGawsdll.gll.keldlpispvrgqvlvlkplseklvspaailpvpe..tdddgrgvyvtpr................................ 258
                 v+ + Gaws+ + ++   el  p   + g+v+ +   +e  v   +  p++   ++ dg ++ ++p                                 
  EHT98107.1 209 VICCGGAWSSRFcRQYgVEL--PAANILGTVFKTTAAPE-VVTGCLSTPNLClrRRLDGSYTVAVPGlgqidlapqniryaakfypmfrskvakklkir 304
                 *********96657776777..99**********77766.44555666666686666666666666567777776677777777777777766666665 PP

                 TTSEEEEEESSE...........EETTCSSTSCSHHHHHHHHHHHHHHSGGG..CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHH CS
         DAO 259 kdgrvlvGgtad...........eesgdddpevdeedidellealrklfPql..gdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlap 343
                 ++g++  G++a+           e  +  dp++d + i++ l +l ++fP+l   +v ++waG  + +pd  p+i+++++ +g+++a+G+sghG+  +p
  EHT98107.1 305 LNGSFFSGPEASgswspdrpspfEKIRVLDPTPDKRIIHDGLAELIRVFPELegIKVDYAWAGWIDtTPDLVPVIDQVSQLPGMFIASGFSGHGFAIGP 403
                 555555566655***9998886655566669********************94555779****999559********999******************* PP

                 HHHHHHHHH CS
         DAO 344 atGkllael 352
                 ++G + a++
  EHT98107.1 404 GAGLMCAQM 412
                 ***999986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   1.3e-09   1.5e-06       1      32 [.      22      53 ..      22      76 .. 0.87
   2 ?   -0.4   0.0       1.2   1.3e+03       7      29 ..     405     434 ..     404     436 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.3e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   ++G+G+ G ++Ay+Lak+g++v l+ek+   G
     EHT98107.1 22 VIGGGIVGTSTAYELAKQGVSVALFEKGVIAG 53
                   8**************************96665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.2
                    HHHHHHHHHHCC.......TEEEEEE-SSS CS
  NAD_binding_8   7 sGlvaAylLaka.......gfdvlllekrd 29 
                    +Gl +A+ L+++        ++   +ek++
     EHT98107.1 405 AGLMCAQMLTNKpvytdltPYRLSRFEKGN 434
                    79******9985333334455666666665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   7.1   2.6e-08   2.9e-05       1     224 [.      19     238 ..      19     249 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.6e-08
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv+ViG+G+ G + A+e+a++G +va+ ek+   g ++    G++   ++  + ++     + l+r+d l++         ++++ ++++  +  L
     EHT98107.1  19 DVVVIGGGIVGTSTAYELAKQGVSVALFEKGVIAGEQSGRNWGWVRQQNRDLH-ELPM-AMRSLQRWDELSGE------IGMDLGFRRSGILYGTL 106
                    9*******************************988888888888777774444.2322.23344444443333......22233333333333333 PP

                    HHT........T----BCCTS.........SB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEE CS
  FAD_binding_2  97 eel........gvpfsrtedg.........pvdvrelGglsatartlhdaadarr.etlvtghallarlvesarkagvdfqerteadeLivedgrv 174
                     e         g + ++             + ++ + G+     +t++  ++    +  ++  + + + +++a+k+g  ++ r+++++L +  g+v
     EHT98107.1 107 NEAdlarwekwGQQAKQ---IgftsqllsaREAQERIGD-----KTPWRGGVWSPtDGRAEPSQAVPAIAKGAQKLGASIFQRCAVRALDISAGHV 194
                    33331110111444333...1344543333333444444.....44555555544455667777788899999999******************** PP

                    EEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT CS
  FAD_binding_2 175 tGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapa 224
                    +G++ e     +   ++a +v++  g+++  +++++  ++++a +++ + 
     EHT98107.1 195 SGVWTE----RGL--VKASRVICCGGAWSSRFCRQYGVELPAANILGTVF 238
                    **9888....444..5699****999999978888777777777666654 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.1e-07   0.00012       2      36 ..      19      52 ..      18      74 .. 0.87
   2 ?   -3.3   0.0       3.7   4.1e+03      97     113 ..     203     219 ..     155     236 .. 0.50

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtcl 36
                 dvvviGgG+ G+++a +la++g+ v+l+ ++g + 
   EHT98107.1 19 DVVVIGGGIVGTSTAYELAKQGVSVALF-EKGVIA 52
                 8***************************.555444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.7
                  EEEESEEEE---EEE-B CS
                  xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGssprd 113
                   +++ +++ + G+++ +
   EHT98107.1 203 LVKASRVICCGGAWSSR 219
                  23333333333333333 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.2e-07   0.00013       1      29 [.      19      47 ..      19      73 .. 0.87
   2 ?   -4.0   0.0       5.1   5.7e+03     118     150 ..     184     215 ..     180     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.2e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                dv+ViGgG  G+  A+++a+ G++v+L+ 
  EHT98107.1 19 DVVVIGGGIVGTSTAYELAKQGVSVALFE 47
                79*************************93 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.1
                 EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 118 veeliveekkvkgvvtedgetikakavviatGt 150
                 v  l+++ ++v+gv te+g  +ka+ v+   G+
  EHT98107.1 184 VRALDISAGHVSGVWTERGL-VKASRVICCGGA 215
                 66777778999999999885.456666666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.6   8.1e-07   0.00091       2      32 ..      18      48 ..      17      54 .. 0.95
   2 ?    1.0   0.0      0.18   2.1e+02     109     196 ..     165     243 ..     159     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.1e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+++G+G +G ++a +L+++Gv+v l ek
     EHT98107.1 18 VDVVVIGGGIVGTSTAYELAKQGVSVALFEK 48
                   79************************99998 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
                    HHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-.HHHHHHTGGEEEEEEEEEEEEEEEEEEC.-S CS
  FAD_binding_3 109 riLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrS.tvrktlgiefegeetvyeagvldvlfda.dl 196
                    +++++ a++ g+++ +   v++l     +v+ + +++       v+a  ++ + G++S +  ++ g+e+++ +      +l+++f++   
     EHT98107.1 165 PAIAKGAQKLGASIFQRCAVRALDISAGHVSGVWTERG-----LVKASRVICCGGAWSsRFCRQYGVELPAAN------ILGTVFKTtAA 243
                    66778888888888888888888888888888888774.....799999*******98245566666655443......44555554444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.5   1.7e-07   0.00019      17      54 ..      17      53 ..       5      62 .. 0.88
   2 ?   -3.1   0.0       3.3   3.7e+03     106     146 ..     169     208 ..     166     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspG 54
                  Dvv++G+G  G ++ay lak+ ++ va++e+ v  G
  EHT98107.1 17 SVDVVVIGGGIVGTSTAYELAKQ-GVSVALFEKGVIAG 53
                57*********************.*********99877 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
                 HHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTCT CS
        Thi4 106 kvlqlanvkllnavaveDlivregegvaGvvinwtlvelah 146
                 k  q+ ++ +++  av  l +     v+Gv ++  lv+ + 
  EHT98107.1 169 KGAQKLGASIFQRCAVRALDISA-GHVSGVWTERGLVKASR 208
                 55566778888888888888877.68999998888887765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   4.5e-07    0.0005       1      37 [.      19      55 ..      19      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.5e-07
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGl 37
                  DvvV+GGg+ G+  A+  a++G +v+L e+    G +
    EHT98107.1 19 DVVVIGGGIVGTSTAYELAKQGVSVALFEKGVIAGEQ 55
                  9****************************98777755 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.0   8.9e-06    0.0099       2      36 ..      19      53 ..      18      56 .. 0.92
   2 ?    1.2   0.0      0.11   1.2e+02     111     165 ..     163     215 ..     153     240 .. 0.86
   3 ?   -2.3   0.1       1.2   1.3e+03       7      20 ..     402     414 ..     400     419 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.9e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 dv+viGgG  G  +A ++ak+g +V+l+ek+  +g
   EHT98107.1 19 DVVVIGGGIVGTSTAYELAKQGVSVALFEKGVIAG 53
                 8*****************************97666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                   v a+ k +++ g ++  +++v++++ +++++  v t +++ ++a++++   GG+
   EHT98107.1 163 AVPAIAKGAQKLGASIFQRCAVRALDISAGHVSGVWT-ERGLVKASRVICC-GGA 215
                  5677888999*********************999999.8999999988776.553 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
                  --SHHHHHHHHHHH CS
  HI0933_like   7 GgGaAGlmaAisaa 20 
                  G G AGlm+A  + 
   EHT98107.1 402 GPG-AGLMCAQMLT 414
                  555.7*****8764 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.3e-05     0.015       1      53 [.      19      72 ..      19     113 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas..psllfpnnyvWsde.fedlga 53
                   DvvviG+G  g s A +l  ak+g++v l e +  ++   + n  W+ + ++dl +
     EHT98107.1 19 DVVVIGGGIVGTSTAYEL--AKQGVSVALFEKGviAGEQSGRNWGWVRQqNRDLHE 72
                   9*****************..********9986522222225666776541345555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   5.2e-05     0.058       2      30 ..      20      48 ..      19      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                v viG G++G++ a+ +a++g++V l++ 
  EHT98107.1 20 VVVIGGGIVGTSTAYELAKQGVSVALFEK 48
                89***********************9875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.12     166     201 ..      19      54 ..       5      74 .. 0.72
   2 ?   -1.6   0.0       1.1   1.2e+03      96     136 ..     176     217 ..     152     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  Pyr_redox_3 166 kvvViGgknSavDaAlelvrkgaeVtvvtrgseiek 201
                  +vvViGg+  +  +A+el+++g +V ++ +g    +
   EHT98107.1  19 DVVVIGGGIVGTSTAYELAKQGVSVALFEKGVIAGE 54 
                  678888888888888888888888888777654444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
  Pyr_redox_3  96 lpiklfeeVesvkkedeg.fevetsketyeAkkviiAtGefd 136
                   +i + + V++++ ++++   v t+++ ++A++vi   G ++
   EHT98107.1 176 ASIFQRCAVRALDISAGHvSGVWTERGLVKASRVICCGGAWS 217
                  56677777777777544426799************9999865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.1e-05     0.079       9      42 ..      19      52 ..      14     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.1e-05
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevke 42
                    v+v+GgG v+++ ++ l+++g  v +  + v +
     EHT98107.1 19 DVVVIGGGIVGTSTAYELAKQGVSVALFEKGVIA 52
                   69***********************998777632 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.4   0.00011      0.12       2      30 ..      20      48 ..      19      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
                EEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvver 30
                vvv+GgG +g   A +la+ g +V ++e 
  EHT98107.1 20 VVVIGGGIVGTSTAYELAKQGVSVALFEK 48
                8***********************99985 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00012      0.13      30      60 ..      19      49 ..      11      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvr 60
                  v+viGgG++G++ +   ++ g +V ++++ 
   EHT98107.1 19 DVVVIGGGIVGTSTAYELAKQGVSVALFEKG 49
                 69************99999999999998875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00035      0.39       1      27 [.      20      46 ..      20      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
                EEEES-SHHHHHHHHHHHHHTHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtli 27
                ++++G G +G+  a++Lak+g  v l 
  EHT98107.1 20 VVVIGGGIVGTSTAYELAKQGVSVALF 46
                689*******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.34
# Mc/sec: 3880.11
//
Query:       EHT98108.1  [L=74]
Description: hypothetical protein CKS_3197 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-17   61.9   0.0    4.2e-17   61.7   0.0    1.1  1  KTSC      KTSC domain


Domain annotation for each model (and alignments):
>> KTSC  KTSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.4e-21   4.2e-17       1      58 []       7      64 ..       7      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.4e-21
                --SSEEEEEEETTTTEEEEEETTTEEEEEES--HHHHHHHHH-S-HHHHHHHHTTTTS CS
        KTSC  1 sSsniksigYdpetqtLeieFkngsvyqYsgVpeevyeallsAeSkgsyfnrhIkgkY 58
                +Ss ++s+g+dp++++Le+e++ngs+ ++  Vp++vy+++++A  + s+f++ I ++Y
  EHT98108.1  7 NSSLFRSAGFDPTSGVLELEYRNGSCRRWLAVPARVYQGFCAAVDPDSFFRESIDNRY 64
                69******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 571.55
//
Query:       EHT98109.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98109.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98109.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98109.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98109.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98109.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98109.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98109.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98109.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98109.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98109.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98109.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98109.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98109.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98109.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98109.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98109.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98109.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2686.78
//
Query:       EHT98110.1  [L=311]
Description: FliC family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-39  134.0  17.6    3.6e-39  134.0  17.6    2.8  3  Flagellin_N      Bacterial flagellin N-terminal helical regio
    8.9e-30  102.9  23.9    1.1e-29  102.6   8.1    4.3  4  Flagellin_C      Bacterial flagellin C-terminal helical regio
  ------ inclusion threshold ------
      0.021   15.2   4.9        5.8    7.4   0.1    3.4  3  Snapin_Pallidin  Snapin/Pallidin
      0.035   13.8   4.7       0.67    9.7   0.1    2.5  2  DUF745           Protein of unknown function (DUF745)
       0.31   10.6   3.3       0.91    9.1   0.2    2.3  2  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.8    6.8   8.8         12    6.3   2.6    3.6  3  DUF948           Bacterial protein of unknown function (DUF94


Domain annotation for each model (and alignments):
>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0  17.6   1.2e-42   3.6e-39       1     135 [.       4     138 ..       4     142 .. 0.99
   2 ?   -0.0   6.5      0.29   8.6e+02      28     122 ..     176     270 ..     156     277 .. 0.67
   3 ?    3.0   3.5     0.035     1e+02      47      87 ..     246     290 ..     237     307 .. 0.69

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 1.2e-42
                  --SS-STTHHHHHHHHHHHHHHHHHHHHTTSBTTSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T CS
  Flagellin_N   1 istnalalaarsnlnknqaelqkaqeelstGlridsalddaaglaisvslrsqiaglsqlvrnnslgisrlqtaqgalselsdilqrlkelavaasnd 98 
                  i+tn+l+l++++nl k+q++l +a+e+ls+Glri+sa+ddaag ai+++++s+i+gl++++rn+++gis+ qta+gal+e++++lqr+++l+v+a+n+
   EHT98110.1   4 INTNVLSLITQNNLDKSQSSLGTAIERLSSGLRINSAKDDAAGEAIANRFTSNINGLTVAARNANDGISLSQTAEGALDEINNNLQRVRDLTVQAQNS 101
                  9************************************************************************************************* PP

                  TTS-SHHHHHHHHHHHHHHHHHHHHHH-EETTEE-SS CS
  Flagellin_N  99 snsdedrqslqaelqqLtdelnrianttsfNGekLla 135
                  sns +d +s+qae++q ++e++r  ++t+fNG k+l+
   EHT98110.1 102 SNSASDIDSIQAEVNQRMQEIDRDTKQTDFNGLKVLN 138
                  *********************************9997 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.29
                  HTTSBTTSSTTS-HHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHHHHH CS
  Flagellin_N  28 lstGlridsalddaaglaisvslrsqi..aglsqlvrnnslgisrlqtaqgalselsdilqrlkelavaasndsnsdedrqslqaelqqLtdelnri 122
                  +s+G + ++ ++++ ++  + + +++i  + l+ +v+  s g++  +t    +++ ++++++ + l+ a++n   s++  + l++++++Lt +  ri
   EHT98110.1 176 ASSGNVQNTSSTTGQTVNGTARSTAAIgfDVLKGAVTGGSGGTASGSTPLADIDKAIKAVDSQRSLLGASQNRFESTI--SNLNNTVTNLTAARSRI 270
                  566666666666666666666666655334566666666666666666666777777777777777777777777776..66777777766655544 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHH..HHHHH CS
  Flagellin_N  47 svslrsqiaglsqlvrnnslgisrlqtaqgals..els..dilqr 87 
                   ++++s i++l++ v+n + + sr+q a+ a +   +s  +ilq+
   EHT98110.1 246 QNRFESTISNLNNTVTNLTAARSRIQDADYATEvsNMSraQILQQ 290
                  5799999*******************9997543113331145555 PP

>> Flagellin_C  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0017         5       9      27 ..      15      33 ..       9      45 .. 0.89
   2 ?   -0.2   2.1      0.45   1.3e+03      22      45 ..      50      73 ..      44     117 .. 0.50
   3 ?    0.0   1.5      0.37   1.1e+03      37      61 ..     109     134 ..      80     145 .. 0.56
   4 !  102.6   8.1   3.6e-33   1.1e-29       2      86 .]     226     310 ..     225     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHH CS
  Flagellin_C  9 tdldkvrselGavqnRles 27
                 ++ldk +s+lG++ +Rl+s
   EHT98110.1 15 NNLDKSQSSLGTAIERLSS 33
                 799**************87 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHCHHHHHHCH CS
  Flagellin_C 22 qnRlesaitnlkaqsenlkaaesr 45
                  nR++s+i+ l+ +  n +  +s 
   EHT98110.1 50 ANRFTSNINGLTVAARNANDGISL 73
                 566666666666666665554442 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.37
                  CHHHHH.HCHHCCHHHHHHHHHHHHH CS
  Flagellin_C  37 enlkaa.esrledvDpaeestrvtkl 61 
                  + ++a+  +r++++D  +  t ++ l
   EHT98110.1 109 DSIQAEvNQRMQEIDRDTKQTDFNGL 134
                  23333213455556655555555555 PP

  == domain 4  score: 102.6 bits;  conditional E-value: 3.6e-33
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHH CS
  Flagellin_C   2 divdeaitdldkvrselGavqnRlesaitnlkaqsenlkaaesrledvDpaeestrvtklqiliqasyallaqanqlpqsllnlL 86 
                  + +d+ai+++d++rs lGa+qnR+es+i+nl+++++nl+aa+sr++d+D+a+e+++++++qil+qa++++laqanq+pq++l+lL
   EHT98110.1 226 ADIDKAIKAVDSQRSLLGASQNRFESTISNLNNTVTNLTAARSRIQDADYATEVSNMSRAQILQQAGSSVLAQANQVPQTMLSLL 310
                  579********************************************************************************98 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0033       9.8      24      51 ..      16      42 ..      13      53 .. 0.82
   2 ?    1.0   0.6       0.2   5.9e+02      37      51 ..      82      96 ..      71     130 .. 0.44
   3 ?    7.4   0.1    0.0019       5.8      12      51 ..     229     268 ..     225     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0033
  Snapin_Pallidin 24 elrqsQeeLleqldrlnekLkeleeaqe 51
                     +l +sQ+ L   ++rl++ L+ ++ a++
       EHT98110.1 16 NLDKSQSSLGTAIERLSSGLR-INSAKD 42
                     789*****************8.554444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.2
  Snapin_Pallidin 37 drlnekLkeleeaqe 51
                     d+ n++L+++++++ 
       EHT98110.1 82 DEINNNLQRVRDLTV 96
                     333333333333333 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0019
  Snapin_Pallidin  12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                        +++++d++ + l +sQ+   +++++ln+ +++l  a +
       EHT98110.1 229 DKAIKAVDSQRSLLGASQNRFESTISNLNNTVTNLTAARS 268
                      56899**************************999888776 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.1     0.004        12      93     154 ..      61     125 ..      15     136 .. 0.62
   2 ?    9.7   0.1   0.00022      0.67     128     177 ..     229     278 ..     176     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.004
      DUF745  93 kaaakaakqaqqqlealkallkaakenlenaeqvaagaqqe...laektqlleaAkkRveeLkkq 154
                 ++aa+ a++  +  ++ + +l+++++nl++++++  +aq++   +++  ++ ++ ++R++e+ ++
  EHT98110.1  61 TVAARNANDGISLSQTAEGALDEINNNLQRVRDLTVQAQNSsnsASDIDSIQAEVNQRMQEIDRD 125
                 45555555555555555555555555555555555555543000233334444555555555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00022
      DUF745 128 agaqqelaektqlleaAkkRveeLkkqlkearkdlektkkaAykAacAAq 177
                 ++a + ++++++ll a+++R+e+  ++l++  ++l++ ++  + A  A +
  EHT98110.1 229 DKAIKAVDSQRSLLGASQNRFESTISNLNNTVTNLTAARSRIQDADYATE 278
                 56888999*******************************99999998865 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2    0.0003      0.91      83     149 ..      73     139 ..      59     153 .. 0.88
   2 ?    1.9   0.3     0.046   1.4e+02     109     161 ..     250     302 ..     221     310 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
  HAUS-augmin3  83 LeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqq 149
                   L q ++ +  e +  l+r   L+vqa + ++  ++ ++ + e++++++e++++++++ ++  +vL++
    EHT98110.1  73 LSQTAEGALDEINNNLQRVRDLTVQAQNSSNSASDIDSIQAEVNQRMQEIDRDTKQTDFNGLKVLNT 139
                   55666666677788899***************************************99998888875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
  HAUS-augmin3 109 aslqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeakqlaeyf 161
                    s  ++l++  ++ ++a+ ++++a+ ++++ n    + Lqq  +++  +a++ 
    EHT98110.1 250 ESTISNLNNTVTNLTAARSRIQDADYATEVSNMSRAQILQQAGSSVLAQANQV 302
                   33344444445555555666666666666666666666666666666665555 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.6    0.0039        12      54      87 ..      75     108 ..      47     130 .. 0.76
   2 ?   -2.1   0.0       1.6   4.8e+03      29      38 ..     186     195 ..     175     207 .. 0.46
   3 ?    1.7   0.1      0.11   3.2e+02      25      58 ..     250     265 ..     222     304 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0039
      DUF948  54 akvnelledvneklekvdplteavadlgesvsel 87 
                 ++++  l+++n+ l++v  lt ++++ ++s s++
  EHT98110.1  75 QTAEGALDEINNNLQRVRDLTVQAQNSSNSASDI 108
                 3344478888889999999999999999888876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
      DUF948  29 deaaatieel 38 
                 + + +t++++
  EHT98110.1 186 STTGQTVNGT 195
                 2222222222 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.11
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvne 58 
                 ++t++++++t+++l+                  +
  EHT98110.1 250 ESTISNLNNTVTNLT------------------A 265
                 344444444444444..................3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2472.07
//
Query:       EHT98111.1  [L=188]
Description: chromate reductase, Class I, flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-38  132.4   0.0    1.6e-38  131.8   0.0    1.2  1  FMN_red       NADPH-dependent FMN reductase
    2.3e-07   30.8   0.0    2.5e-07   30.6   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   1.8e-42   1.6e-38       2     149 ..       7     149 ..       6     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 1.8e-42
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEE.ETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaeveli.dladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrls 99 
                 k + + GSlrkgs++ ++a+++ + +++ g+ ve +  ++d   p  l+d+d ++e + +d v +l e+i++ad+++ivtPeYn+s++g lKna+D+ls
  EHT98111.1   7 KMVTLLGSLRKGSYNAMIAHALPQLAPQ-GVVVEALpSIRD--IP--LYDADIQQEAGIPDTVTALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLS 100
                 8899**********************99.999999978999..7*..**************************************************** PP

                 -.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECSEEE CS
     FMN_red 100 rtrgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvpraava 149
                  + ++++l+gKpva+ + + g+ gg+r++++lrq+l +l+a+v+++++++
  EHT98111.1 101 -RVPNQPLAGKPVAIQTSSMGAIGGARCQYHLRQILVFLDAMVLNKPEFM 149
                 .6999****************************************99987 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.8e-11   2.5e-07      26     105 ..      26     101 ..       7     172 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.8e-11
                   HHHCCCTTTEEEEEEHHCC.T-----CCCCHCCHHHHTT.CHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS- CS
  Flavodoxin_2  26 ealekagphevtvrdLyad.flpvlttrdlaaklayeek.padveseqiekllaadaivlqfPlwwfgvPailKgwiDrvlt 105
                    al +  p+ v v  L  +  +p  ++ d++    +e + p  v++ + e++++ad +v+++P ++++vP  lK+ iD   +
    EHT98111.1  26 HALPQLAPQGVVVEALPSIrDIPLYDA-DIQ----QEAGiPDTVTALA-EQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSR 101
                   333333333377777777766677766.333....2333566777777.99************************9998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1597.90
//
Query:       EHT98112.1  [L=76]
Description: hypothetical protein CKS_3188 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-20   72.1   0.0    3.8e-20   71.8   0.0    1.1  1  DUF333    Domain of unknown function (DUF333)


Domain annotation for each model (and alignments):
>> DUF333  Domain of unknown function (DUF333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   2.1e-24   3.8e-20       2      48 .]      27      72 ..      26      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 2.1e-24
      DUF333  2 maNPAsvyCvkqGGkleiakdadGgqvgyCqlpdGkrceEwaLyrgd 48
                +aNPAs +C+ +GGk+ i+k++  g+vgyC+lp G+++eEw+Lyr+d
  EHT98112.1 27 LANPASQHCLAVGGKSDIVKTPT-GEVGYCTLPSGEHIEEWTLYRRD 72
                79*********************.*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 670.07
//
Query:       EHT98113.1  [L=166]
Description: hypothetical protein CKS_3187 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1360.47
//
Query:       EHT98114.1  [L=261]
Description: beta-lactamase-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-05   22.8   0.4    0.00017   21.7   0.4    1.5  1  Lactamase_B  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.4   9.3e-09   0.00017       8     156 ..      73     195 ..      68     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.3e-09
                  EEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCC CS
  Lactamase_B   8 syliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadk 105
                  ++li g  g++L D+    +aa        + + +  +da+ ++H+H+  +++  +++  +d+p +++a + ++  ++ +                  
   EHT98114.1  73 AFLIKGQQGNVLWDCIPNLDAATVD-----IIRALGGIDAIAISHPHY--YSNMQDWAAIFDAPLYIHASDSEWIVRDSPH----------------- 146
                  79*********************85.....9****************8..***********************99999993................. PP

                  EEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHH CS
  Lactamase_B 106 pdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallage 156
                     +++++d+ ++         g    +g +  +++++++l++GD + +++
   EHT98114.1 147 --LQLWDGDVLTMLPDISLLRLGGHFAGGTVLHWAKNEGILLSGDIIQVAP 195
                  ..4444444444444444444444444444455778888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2089.83
//
Query:       EHT98115.1  [L=464]
Description: cryptic phospho-beta-glucosidase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.9e-152  506.8   0.0   4.3e-152  506.7   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
    0.00012   21.6   0.0    0.00029   20.4   0.0    1.5  2  Cellulase      Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
      0.042   13.5   0.0      0.065   12.9   0.0    1.2  1  DUF4038        Protein of unknown function (DUF4038)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  506.7   0.0  7.3e-156  4.3e-152       3     451 ..       2     458 ..       1     460 [. 0.97

  Alignments for each domain:
  == domain 1  score: 506.7 bits;  conditional E-value: 7.3e-156
                    GGS-TT-EEEEE--HHHHH--TTSTT---BHHH.....HHHHHGGGSTTS--.-SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS.TT- CS
  Glyco_hydro_1   3 etfpedFlwgaataayqiEGawnedGkgesiwD.....tftetpgkvlegsn.gdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG.ege 91 
                    +tfp+dFlwg+a aa+q EGa+ +dGkg+s++D     +f    ++v+ +s  +dva+d+Yhry+eD++l++e+g+k++r+Si+W+Ri+P+G e +
     EHT98115.1   2 KTFPDDFLWGGALAANQTEGAYLDDGKGLSTSDvqpqgVFGPVVERVAGDSSiKDVAIDFYHRYPEDIKLFAEMGFKCLRVSIAWTRIFPNGdEQQ 97 
                    79*******************************999999*********99988******************************************* PP

                    --HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TT CS
  Glyco_hydro_1  92 inekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdl 186
                    +ne+Gla+Y+ L+del+++gi+plvTl H+++P aL + +Ggw +r++i  f++ya++vf+r+++kvklwlTfnE+n++ +++ ltg+  P+++++
     EHT98115.1  98 PNEAGLAFYDMLFDELAAHGIKPLVTLSHYEMPWALVKqYGGWGSRQTIGFFERYARTVFARYKEKVKLWLTFNEINMSLHAP-LTGVGLPETSNK 192
                    ************************************999**************************************988877.678888999*** PP

                    THHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHH CS
  Glyco_hydro_1 187 eaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedke 281
                     ++y+a+H++l+a+a avk++++++++++ig++l   l++pl+ ++ed+ ea +++++++  +f d++++G+Yp +m + +r++g++  it++d e
     EHT98115.1 193 GEVYQAIHHQLVASALAVKACHDIIPDARIGNMLLGGLVYPLTCKPEDVlEALQENRSWQ--FFGDVQCRGAYPGYMLRFFRDNGIQIDITDADRE 286
                    ***********************************************************9..********************************** PP

                    HHTT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.HHH-- CS
  Glyco_hydro_1 282 llkgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee.gkveD 376
                     l+ ++df++++yY+s +v+++e   a  ++++++ l++  +p+l ++++gw+i+p glr+ll++l ++Yq +p++i+eNGlgakd+    g v+D
     EHT98115.1 287 ALTSTVDFISFSYYMSGCVTTDE---ALNQQARSNILSMVPNPHLASSEWGWQIDPVGLRTLLNVLWDRYQ-KPLFIVENGLGAKDKPDAdGVVQD 378
                    ********************999...88889999999999*******************************.9*************98767***** PP

                    HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-S CS
  Glyco_hydro_1 377 dkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekn 451
                    d+Ri+Yl++hl++v++ai+dgv++ gY++w+ +D+++++++  skr+G++yvdr    n tl R +kkS+ wykevi++ 
     EHT98115.1 379 DYRISYLNDHLVQVREAIDDGVEVMGYTSWGPIDLVSASRAeLSKRYGFIYVDRddngNGTLARSRKKSFWWYKEVIATS 458
                    ***************************************999************9988899****************986 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.9e-08   0.00029      25     132 ..      67     174 ..      52     200 .. 0.85
   2 ?   -3.0   0.0      0.62   3.7e+03     237     261 ..     355     384 ..     350     408 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.9e-08
                 HHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.TTT.CSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTT CS
   Cellulase  25 alidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse.egw.ltkadgnssedtaeeffkklwtqiAerykknde 121
                 + i++++++gf+++R+ ++w ++++n+++ + +e+ l+ ++ + +   ++g++ ++ + ++   w l+k+ g   + ++  ff+ + + + +ry k++ 
  EHT98115.1  67 EDIKLFAEMGFKCLRVSIAWTRIFPNGDEQQPNEAGLAFYDMLFDELAAHGIKPLVTLSHYeMPWaLVKQYGGWGSRQTIGFFERYARTVFARY-KEK- 163
                 568999***************************************************999876775555555667788999*************.443. PP

                 TEEEESSSS-- CS
   Cellulase 122 vvifelmNEPh 132
                 v ++ ++NE +
  EHT98115.1 164 VKLWLTFNEIN 174
                 33444677765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.62
                 SEEEEEEEESSTTSSH.....HHHHHHHHH CS
   Cellulase 237 ipviigEfGgsnadgd.....lakeeaekw 261
                 +p++i E G++ +d++     ++++++ ++
  EHT98115.1 355 KPLFIVENGLGAKDKPdadgvVQDDYRISY 384
                 589999999998888655444444444333 PP

>> DUF4038  Protein of unknown function (DUF4038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.065      71     167 ..      90     205 ..      80     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                 -SST....-S-THHHHHHHHHHHHHHTT-EEEEESS-.....HHHHHTT..........SS-HHHHHHHHHHHHHHHTT-SEEEEEECCC-TT...... CS
     DUF4038  71 lidndltkpneaYfdhvdkivelaaekgllialvptw.....gdkvkegw.....gpenifnaekakeygkylvaRYkalpiiWllggDrdgee..... 154
                 + ++d ++pnea     d +++++a++g+ + +                      g ++  +    ++y++ ++aRYk++  +Wl+  +++++      
  EHT98115.1  90 FPNGDEQQPNEAGLAFYDMLFDELAAHGIKPLVTLSHyempwA------LvkqygGWGSRQTIGFFERYARTVFARYKEKVKLWLTFNEINMSLhaplt 182
                 5678899999998888889999999999988755544222211......122123344556788899********************999998777777 PP

                 ..........HHHHHHHHHHHHH CS
     DUF4038 155 ..........revwkaiaegike 167
                            ev++ai +++ +
  EHT98115.1 183 gvglpetsnkGEVYQAIHHQLVA 205
                 77777777665566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3577.35
//
Query:       EHT98116.1  [L=617]
Description: PTS system beta-glucoside-specific EIIBCA component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-48  163.2   0.1    3.5e-48  162.6   0.1    1.3  1  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
    3.4e-27   95.3  27.6    3.4e-27   95.3  27.6    1.7  2  PTS_EIIC         Phosphotransferase system, EIIC
    5.7e-14   51.3   0.1    9.8e-14   50.6   0.1    1.4  1  PTS_EIIB         phosphotransferase system, EIIB
  ------ inclusion threshold ------
      0.062   13.1   0.1       0.15   11.9   0.1    1.6  1  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.1   7.7e-52   3.5e-48       2     127 .]     469     594 ..     468     594 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 7.7e-52
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 ++lsp++G+v++l++vpD++fa+++lG+G+ai+ps+++vvap++G v ++f+tkHaig+ +d+g+evlih+Gidtvkl+g +F+++vk gd+V+ gd+l
  EHT98116.1 469 TVLSPMTGTVLALDQVPDTTFASGLLGSGAAIIPSDNNVVAPFTGVVASLFQTKHAIGLLSDSGIEVLIHVGIDTVKLNGIPFTAHVKVGDSVQPGDLL 567
                 799************************************************************************************************ PP

                 EEE-HHHHGGGSS---EEEEESSGGGX CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnseev 127
                 +e+d +ai +agy++ttp++++ns+e+
  EHT98116.1 568 LEFDRQAIIDAGYDLTTPIIISNSDEY 594
                 ***********************9975 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3  27.6   7.5e-31   3.4e-27       2     324 .]     108     392 ..     107     393 .. 0.81
   2 ?   -2.1   0.3      0.35   1.6e+03     201     240 ..     429     468 ..     405     504 .. 0.66

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 7.5e-31
    PTS_EIIC   2 dgfmlpiplliagGillglgnlpnssdlkglss.lgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                  +f++ i +l a+Gil gl           l+   g+ t+ s++++i  +a++a f + pl +++++++++  gg+++  + ++ +l ++  +aa+++ 
  EHT98116.1 108 GIFTPFIGVLAASGILKGLLA---------LAVvCGWLTTESGTYKIWFAASDALFFFFPLVLGYTAGKKF--GGNPFITMVIGGALTHPIMIAAFNAS 195
                 68*******************.........2223689999*******************************..******55555555554443333333 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggs 198
                  +++    +++  +lgi+++  ++  ++i+ +laa++  ++e+  t+ LP++   f+++ +   +t+ +++lv+g++  ++++++ ++  +    +++ 
  EHT98116.1 196 QQPD----AVTEAFLGIPVTWFNYSSSVIPIILAAWVSCWLERQSTKLLPSAMKNFFAPLICLGVTVPLTFLVIGPLATWLSQMLANSYQW----IYAL 286
                 3333....679********************************777777777666666666666666666666666666666665555555....9999 PP

    PTS_EIIC 199 gsllgvlifgflerllipfGlHhafiapfwftsa....ggslaianqqlygagkeaahiltgefvs.vmfGgpgatlalyiaaflekkskqkkllgsaa 292
                  ++l+++ +g+l+++ ++fGlH ++++ ++ ++a    +                    +  +++  ++fG +ga+l++++    + + +++k+l + +
  EHT98116.1 287 APWLAGAAMGALWQVCVIFGLHWGLVPLMINNVAvlghD--------------------SMLPMLLpAVFGQVGAALGVFL----RTRDARQKMLAGSS 361
                 99*****************************99933332....................22222335***********988....888999******** PP

    PTS_EIIC 293 ltpflfGItepleFgfpfvlnlllfipallag 324
                 +t+++fGItep+ +g+++ l+++ fi  ++ag
  EHT98116.1 362 VTAGIFGITEPAVYGVNLPLRRP-FIFGCVAG 392
                 ***********************.77766665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.35
    PTS_EIIC 201 llgvlifgflerllipfGlHhafiapfwftsaggslaian 240
                  l +++fg++++l + +Gl  +  +p+  t+ g+s a +n
  EHT98116.1 429 TLWGGLFGTMVALVLSCGLTLVAGMPARATPNGHSSAGKN 468
                 4556677777777777777776666666666655555544 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.1   2.2e-17   9.8e-14       1      34 []       8      41 ..       8      41 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 2.2e-17
                HHHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  1 keIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                k+Il + GGk+NI+s+ hCaTRLR++l+D+ k+d
  EHT98116.1  8 KDILSHAGGKENIISLVHCATRLRFKLRDKQKAD 41
                68******************************98 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.3e-05      0.15      17      37 ..     554     574 ..     552     578 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
  Biotin_lipoyl_2  17 nVkdGqrVkaGdvLaelDsra 37 
                      +Vk G+ V+ Gd+L+e D +a
       EHT98116.1 554 HVKVGDSVQPGDLLLEFDRQA 574
                      79****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4275.00
//
Query:       EHT98117.1  [L=95]
Description: BglG family transcriptional antiterminator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   66.5   0.5    2.3e-18   66.3   0.5    1.0  1  PRD       PRD domain


Domain annotation for each model (and alignments):
>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.5   1.3e-22   2.3e-18       9      89 ..       5      89 ..       2      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.3e-22
                HHHTS-B.TTCHHHHHHHHHHHHHHHHHHTT...--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD  9 kklqikl.eddslyerLitHlkfaieRlkeg...itienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89
                ++l++++ e++ +y+r++tHlkf+ +R+  +   ++ + +l   +k++y  + ++a +i+++l+++++ el+ +Ei++l+lh+++
  EHT98117.1  5 YQLHLEYdEESLSYQRFVTHLKFFAQRMLTRtvvQDDDASLHVAVKDNYGLAWKCAGKIAQHLNKNYQRELTTEEIMFLTLHIER 89
                67888889*******************99999*99************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 726.75
//
Query:       EHT98118.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98118.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98118.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98118.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98118.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 718.20
//
Query:       EHT98119.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98119.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 950.59
//
Query:       EHT98120.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98120.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98120.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98120.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98120.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98120.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98120.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98120.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98120.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98120.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98120.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98120.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT98120.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98120.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT98120.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98120.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT98120.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98120.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98120.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98120.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT98120.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98120.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98120.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98120.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98120.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98120.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98120.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98120.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98120.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98120.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98120.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT98120.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT98120.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT98120.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT98120.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98120.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98120.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 3787.21
//
Query:       EHT98121.1  [L=234]
Description: BglG family transcription antiterminator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-22   77.5   0.1    8.8e-22   76.8   0.1    1.3  1  CAT_RBD   CAT RNA binding domain
    7.5e-20   71.0   0.0    1.6e-19   70.0   0.0    1.6  1  PRD       PRD domain


Domain annotation for each model (and alignments):
>> CAT_RBD  CAT RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   9.8e-26   8.8e-22       1      53 [.      11      63 ..      11      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 9.8e-26
                -EECEEECTTEEEEE-C.CSEEEEE-TTTTTT--TTSEEETTTSSEEEEE-SH CS
     CAT_RBD  1 mkIkKvLNNNvvlakdekgkEvilmGkGIGFgkkkgdeideekieKvFvlkde 53
                mkI K+LNNNvv+a de+g+E ++mG+G++F+k++gd+++ + ieKvF l+++
  EHT98121.1 11 MKIAKILNNNVVVALDERGSEQVVMGRGLAFQKRAGDTLETALIEKVFALQND 63
                9*************************************************986 PP

>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   1.8e-23   1.6e-19       3      89 ..      87     171 ..      85     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 1.8e-23
                 HHHHHHHHHTS-BTTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD   3 iiekiekklqikleddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89 
                 ii  + ++l+ kl +dsly+ L++H  faieR k+g  i+n ll+eik+ yp+ef + +e+ +++ ++l+++l edE++++alh+  
  EHT98121.1  87 IIRLAGQRLG-KL-QDSLYITLTDHYYFAIERQKKGLAIKNVLLWEIKRLYPREFGLGQEARAIIARRLHVDLAEDEAGFIALHLVT 171
                 5666666666.78.9*********************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1720.35
//
Query:       EHT98122.1  [L=449]
Description: putative carbohydrate-selective porin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-57  194.0   6.7    6.1e-57  193.7   6.7    1.0  1  OprB      Carbohydrate-selective porin, OprB family


Domain annotation for each model (and alignments):
>> OprB  Carbohydrate-selective porin, OprB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   6.7   3.4e-61   6.1e-57       4     378 .]      79     449 .]      76     449 .] 0.95

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 3.4e-61
        OprB   4 laylgrlqeefdadLaklagrvdgleartsalerqg.fslttk....ltgevlfavtevfggkkqnrvrLtelsftqkffddrLdirlgrgnvndefyy 97 
                  ay ++++++f  dLa+  g+  ++    ++++r+    ltt     +++     ++e +gg+    +rL  l+f  +f+d r++ r+g +n  + f  
  EHT98122.1  79 VAYIDQFALTFTQDLARWTGI-PDARIEGNIVNRNHnDDLTTRrvqdPRVNINDLTQESWGGQ--SITRLGWLTFARSFDDRRITWRIGMMNKVQTF-- 172
                 5899*****************.99999999998865156777789999999999999999999..7*****************************99.. PP

        OprB  98 asptgtqflnlsfcggpnnnvsvdslayywPvaslGervrynptpelaaqgGvfddnpttlnpygslsgftfigsggtgigvpvelgwalnsggngllp 196
                 +    ++f+ ls cgg + n      +++w+v ++G+++ yn+tp +++ gGv ++np   +    ++ ++ +++g++gi++pve++ +   +  + lp
  EHT98122.1 173 DQIIPCDFQLLSQCGGKSAN---ALTWHNWNVHTWGTTLSYNVTPAITLKGGVMEQNPDASSR---HHAWSGSTKGSKGILLPVEIEAR---PMINHLP 262
                 999*****************...55569***********************************...99999999***************...77999** PP

        OprB 197 Gkykagaqlntapfddvrldltyvnaylttlantnfseladgkqgnslgveqaltradg..srgltlfarasvadgnteiwtygvslGlpdlGpfdgRp 293
                 G y +g  +++ap++d++ + ++  + +    +     ++++ + +++g  q+lt++++  +rgl+++a++s ad++t+ + + + + +++ G fd+Rp
  EHT98122.1 263 GAYNLGVVFTNAPQTDLYHGRSGGAGAT----DPEGYTQRNRTWFVYAGMNQQLTQHKDdsNRGLSASASMSLADQRTNYIHQVYAASVRYRGLFDARP 357
                 ********************99765555....77788888889**************99**************************************** PP

        OprB 294 gDtlGiaagvqplssgaranqldtalvtgi.......glpnqgteyvlElfYkyqltdnlsitPdlqyiinPggntdnanaaviGlrttftF 378
                  D+ G++ +   +s+g  +nq+ +++ +g        + p+ g++++ E +Y+ +   +l ++P++qy ++Pgg ++ ++a+v  l+t +tF
  EHT98122.1 358 EDWMGLGLSWIDMSTGYAQNQRYMNTLSGLsdhnnpmYHPVPGHSLNGEFYYRFRPLSWLELQPGIQYWHHPGGVSRTQDAWVTTLKTAVTF 449
                 *************************999999************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 3125.04
//
Query:       EHT98123.1  [L=180]
Description: periplasmic chorismate mutase I precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-16   58.4   2.9    4.7e-13   49.3   0.1    2.2  2  CM_2            Chorismate mutase type II
  ------ inclusion threshold ------
       0.21   11.8   3.7       0.29   11.4   2.0    2.0  2  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_
       0.25   11.4   2.7        2.7    8.1   0.1    2.4  2  DUF2730         Protein of unknown function (DUF2730)


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   7.9e-17   4.7e-13      13      75 .]      32      98 ..      29      98 .. 0.93
   2 !    9.5   0.3    0.0002       1.2       1      17 [.     121     137 ..     121     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 7.9e-17
                HHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH.HH...S-HHHHHHHHHHHHHHHHHHHH CS
        CM_2 13 eLLaeRaelakevgeyKkeeglpvydpeReaevlerlee.ga...ldeeaierifreiisasralqk 75
                + L eR+ l+k+v+++Kk +++pv+d  Re++vl++ +e  a   ld+++++ +f+++++as+a+q+
  EHT98123.1 32 RALHERMLLMKDVAAFKKVHNKPVEDLTREKDVLAEAQEkSAqagLDPQSVTVFFQALMDASKAIQY 98
                689************************************622569********************97 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHH CS
        CM_2   1 RkeIdeiDdeileLLae 17 
                 Rk+I+++D++il+ + +
  EHT98123.1 121 RKQINQLDEQILQAIHQ 137
                 9************9976 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.47   2.8e+03       4      15 ..      60      71 ..      57      86 .. 0.75
   2 ?   11.4   2.0   4.8e-05      0.29       7      58 ..     115     175 ..     108     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
  Plasmid_RAQPRD  4 aEreeLakllkq 15
                     E++ La+++++
      EHT98123.1 60 REKDVLAEAQEK 71
                    577888877764 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.8e-05
  Plasmid_RAQPRD   7 eeLakllkqLdqlqalveraeaqakqe...eka......RvhfdYdrlr.rDleriraGIqs 58 
                     ++La+l kq++ql++++ +a  q+ ++   + +      + ++d++ l+ +D++ + +G+++
      EHT98123.1 115 KDLAELRKQINQLDEQILQAIHQQLSQssfS-KgdltflHHQLDVQHLSgDDINNVLQGLEQ 175
                     68************99999888777774442.157888899*******8568*****99986 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.013        80      65     100 ..      34      69 ..      30      71 .. 0.90
   2 ?    8.1   0.1   0.00045       2.7      54      88 ..     106     141 ..      86     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.013
     DUF2730  65 lekLkllladlrgelkaleaevrqlshqvdLLLene 100
                 l++ +ll++d+ +  k  ++ v+ l +  d+L e++
  EHT98123.1  34 LHERMLLMKDVAAFKKVHNKPVEDLTREKDVLAEAQ 69 
                 888899*******99999**************9975 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00045
     DUF2730  54 tkvenLPtakdlekLkllladlrgel.kaleaevrq 88 
                 +k +++P akdl++L++++++l+ ++ +a++++++q
  EHT98123.1 106 AKPQSVPPAKDLAELRKQINQLDEQIlQAIHQQLSQ 141
                 566899****************98753788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1235  (0.0688828); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1298.40
//
Query:       EHT98124.1  [L=623]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-52  176.3  18.2    4.5e-52  176.3  18.2    3.5  3  MCPsignal     Methyl-accepting chemotaxis protein (MCP) signa
    1.1e-10   41.8   4.1    1.1e-08   35.3   0.3    4.3  3  HAMP          HAMP domain
  ------ inclusion threshold ------
      0.015   15.1   2.3       0.03   14.1   0.3    2.5  2  Sec5          Exocyst complex component Sec5
       0.31   11.3   1.8        3.7    7.9   0.1    3.4  4  3H            3H domain
        1.2    9.3  10.6       0.31   11.3   2.1    3.6  3  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5      0.39   1.4e+03     142     142 ..     203     203 ..     164     267 .. 0.55
   2 !    6.5   4.7    0.0018       6.6     109     170 ..     341     402 ..     312     414 .. 0.67
   3 !  176.3  18.2   1.3e-55   4.5e-52       1     171 [.     415     571 ..     415     572 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.39
                 H CS
   MCPsignal 142 d 142
                 +
  EHT98124.1 203 Q 203
                 1 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0018
                 .HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 109 leetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 ++ +    ++  +++ + ++ +++++ a +e+a+   ++++ +e+qsa++ +++ ++ee+++
  EHT98124.1 341 MQAVSVMNDSLQNIITHVRDGVNSVARASSEIAAGNMDLSSRTEQQSAAVVQTAASMEELTS 402
                 34444444444556666667777777777777777777777777777777777777776654 PP

  == domain 3  score: 176.3 bits;  conditional E-value: 1.3e-55
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal   1 sdlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 s+la+eas +A +gg+ +  vv++m+ i++ss +i +ii+Vi++i++QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsa aakeie+li    
  EHT98124.1 415 SQLATEASANAGRGGEIIRSVVTTMQGITTSSGKIGEIISVINGISFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAVAAKEIETLI---- 509
                 57899******************************************************************************************.... PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                            ++ +rv+egs+lv+++g+++ eiv +v++v+d+++eiaaas+eq ++i++++qa++e+++ 
  EHT98124.1 510 ----------RDSLNRVNEGSTLVDQAGTTMDEIVLSVTQVKDIMSEIAAASDEQNRGISQIAQAMTEMDTT 571
                 ..........999********************************************************975 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.3   3.1e-12   1.1e-08       2      52 ..     302     352 ..     301     353 .. 0.92
   2 ?    4.3   0.1     0.015        54      10      28 ..     362     382 ..     357     412 .. 0.82
   3 ?   -0.9   0.0      0.63   2.3e+03       8      21 ..     556     569 ..     554     582 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.1e-12
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 ++ +i+ PL++  ++a+ria+Gdl+++l + +rDE+G+L +a+ +M d+L+
  EHT98124.1 302 ITLSITVPLKETLSVAKRIAEGDLTASLSTARRDELGQLMQAVSVMNDSLQ 352
                 7889**************************************988866665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHTTT..BTSST CS
        HAMP  10 LrrLaraarriaaG..dldtr 28 
                 ++ +ara  +iaaG  dl++r
  EHT98124.1 362 VNSVARASSEIAAGnmDLSSR 382
                 5789**********8888888 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHT CS
        HAMP   8 rPLrrLaraarria 21 
                 r + ++a+a+ +++
  EHT98124.1 556 RGISQIAQAMTEMD 569
                 56778888888886 PP

>> Sec5  Exocyst complex component Sec5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.62   2.2e+03      39      54 ..     388     409 ..     333     423 .. 0.51
   2 ?   14.1   0.3   8.5e-06      0.03      21      95 ..     536     611 ..     520     619 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.62
        Sec5  39 d......slveeLeeslneair 54 
                          +eeL + +++ ++
  EHT98124.1 388 AavvqtaASMEELTSTVKQNAE 409
                 1233333444444444444333 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8.5e-06
        Sec5  21 tldqiykefseskte.aqedslveeLeeslneairkttllfkpvlenkekadklraaleviernkflFnLPksLke 95 
                 ++ q+++ +se   + ++++ +++++ ++++e+ ++t++    v e+++ a++l++  e +e+   +F +P++ k+
  EHT98124.1 536 SVTQVKDIMSEIAAAsDEQNRGISQIAQAMTEMDTTTQQNAALVEESSAAASSLESQAEALEKKVAVFRVPSNKKS 611
                 4556666666644443788899*************************************************98655 PP

>> 3H  3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1     0.001       3.7      49      92 ..      51      95 ..      35      97 .. 0.83
   2 ?   -1.7   0.0         1   3.7e+03      48      68 ..     178     202 ..     174     230 .. 0.72
   3 ?   -1.0   0.0      0.62   2.2e+03      35      63 ..     323     351 ..     313     364 .. 0.75
   4 ?   -1.6   0.0      0.99   3.5e+03      15      46 ..     520     552 ..     514     580 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
                HHHHHHHHHH-.-S--STTGGGGEEEEEEEESSHHHHHHHHHHHH CS
          3H 49 vkkfieklkks.kaslLseltsgvHlHtieapseetldkieeeLk 92
                  +f+++l ++  ++lL++ t++ H+ +++a+  ++l + +++Lk
  EHT98124.1 51 TVDFVNTLGEArTSRLLYQYTKDEHYAQVNAKALNDLTAQVNRLK 95
                4589999999648899****************9999988777776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                 HHHHHHHHHHH-.-S--...STTGG CS
          3H  48 dvkkfieklkks.kasl...Lselt 68 
                 dv++f++k ++s k+++   +s++t
  EHT98124.1 178 DVERFVDKPTESsKSEIsdnISTVT 202
                 8888888877752555444455555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.62
                 EEEEEEEEE-SHHHHHHHHHHHHH--S-- CS
          3H  35 geltaklnissredvkkfieklkkskasl 63 
                 g+lta+l  + r+++ + ++ ++  ++sl
  EHT98124.1 323 GDLTASLSTARRDELGQLMQAVSVMNDSL 351
                 5899999999***9999999988765555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.99
                 HHHH.HTT-EEEEEEEEETTTEEEEEEEEE-SH CS
          3H  15 eiiv.dnggtvedvivehpvygeltaklnissr 46 
                 +++v + g t  +++ ++  ++++  ++  +s 
  EHT98124.1 520 STLVdQAGTTMDEIVLSVTQVKDIMSEIAAASD 552
                 555623444455555566666666665555444 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.18   6.3e+02      53     103 ..     192     240 ..     174     242 .. 0.79
   2 ?   -0.1   0.3       0.3   1.1e+03      67      90 ..     381     404 ..     324     424 .. 0.52
   3 ?   11.3   2.1   8.8e-05      0.31       6      97 ..     508     600 ..     505     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.18
                   HHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
  Seryl_tRNA_N  53 NelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekllla 103
                    e+s +I+   +    a+ l  +v ++++ l++ +++l++l+++++++l+a
    EHT98124.1 192 SEISDNISTVTQL--RAQLLALSVPDIQAVLATQKTDLAQLRQAFTDYLSA 240
                   5666666666654..477788889999999999999999999999999876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
                   S-TCCCCCCCHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  67 edaeeliaevkelkeelkaleael 90 
                     +e+  a v +  + +++l+ ++
    EHT98124.1 381 SRTEQQSAAVVQTAASMEELTSTV 404
                   333333333333333333333333 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 8.8e-05
                   HHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   6 lirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleael 97 
                   lir+ +  v e      ++  ++de++   ++ + +++e+ ++  e+N+   +I++a+ +    +++  a v+e ++  + le + ++le+++
    EHT98124.1 508 LIRDSLNRVNEGSTLVDQAGTTMDEIVLSVTQVKDIMSEIAAASDEQNRGISQIAQAMTEMdTTTQQNAALVEESSAAASSLESQAEALEKKV 600
                   6788888888887777888899*************************************9876666677777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2093  (0.116738); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 4224.72
//
Query:       EHT98125.1  [L=125]
Description: polymyxin resistance protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-05   24.2   6.0    0.00012   22.7   6.0    1.7  1  Multi_Drug_Res  Small Multidrug Resistance protein
    0.00027   21.1  14.0     0.0035   17.5  14.3    1.9  1  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.088   12.7   0.4       0.14   12.1   0.2    1.5  1  SLATT_1         SMODS and SLOG-associating 2TM effector domai


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   6.0   1.9e-08   0.00012      33      93 .]      44     110 ..       2     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.9e-08
                     -HHHH.....HHHHHHHHHHHHH-------HHHHHHHH.HHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  33 llviv.....gygisfllLskalkslpvsvAYavwsGi.Gtvlivlvgillfgeslslkkliglali 93 
                     +l+i+     +y++s++   +al++lp+s AY+++s +   v ++++++ lf e+++   ++g++l+
      EHT98125.1  44 PLLILcggltAYACSMVSWFLALRHLPLSRAYPLLSISyVLVWLMAISLPLFAEPFHTGAMVGVMLV 110
                     33333344559************************955145678889999***************97 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  14.3   5.9e-07    0.0035      57     135 ..      27     117 ..       3     119 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.9e-07
        EamA  57 aklslkd........wllllllgl..lgtvlafllffyalkktsasnaslitslePvft..lilsvlllgekltlkqllgivlillGvlli 135
                 + +sl++        wl ll+l+    + ++ ++ +f al++++ s+a +++s++ v++  + +s  l+ e++    ++g++l+l+G+l +
  EHT98125.1  27 QLPSLQAvlmqhpvnWLPLLILCGglTAYACSMVSWFLALRHLPLSRAYPLLSISYVLVwlMAISLPLFAEPFHTGAMVGVMLVLAGLLCM 117
                 233333333333444666655544337788888******************999888772255667789******************9976 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   2.4e-05      0.14      27      83 ..      21      77 ..      13      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
     SLATT_1 27 wrlllillellalllaalrafgelsv.dlvgvlaavaaallaWlelkqyeelaaaYsl 83
                +r++++ l  l ++l+    ++ l++  l g l+a a ++++W+ + ++ +l++aY l
  EHT98125.1 21 LRWAMLQLPSLQAVLMQHP-VNWLPLlILCGGLTAYACSMVSWFLALRHLPLSRAYPL 77
                5555555555555555444.888888899***************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1025.67
//
Query:       EHT98126.1  [L=107]
Description: polymyxin resistance sucrose-6 phosphate hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-11   44.4  10.1      2e-11   44.2  10.1    1.1  1  EamA            EamA-like transporter family
    9.4e-06   25.6   0.6    1.1e-05   25.4   0.5    1.2  1  TMEM234         Putative transmembrane family 234
      4e-05   24.2   3.6    5.1e-05   23.9   3.6    1.1  1  Multi_Drug_Res  Small Multidrug Resistance protein
     0.0045   16.7   7.0     0.0053   16.5   7.0    1.3  1  DUF4010         Domain of unknown function (DUF4010)
     0.0062   15.7   3.7     0.0065   15.6   3.7    1.1  1  Mg_trans_NIPA   Magnesium transporter NIPA
     0.0065   15.8   1.4     0.0068   15.8   1.4    1.0  1  TPT             Triose-phosphate Transporter family
  ------ inclusion threshold ------
       0.12   12.4   0.3       0.12   12.4   0.3    2.2  3  DUF5345         Family of unknown function (DUF5345)
        2.3    8.0   5.7       0.32   10.8   1.6    1.6  2  VirB8           VirB8 protein
        3.3    7.4  15.4       0.42   10.2   6.4    2.0  2  DUF4131         Domain of unknown function (DUF4131)
        6.6    7.2  14.4         11    6.5   3.5    2.3  2  DUF202          Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2  10.1   1.1e-14     2e-11      39     135 ..       7     103 ..       1     105 [. 0.88

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.1e-14
        EamA  39 liagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 l+ ++l ++  l++++  ++ ++ +++  ll +l+  +l++++++  l+++++s a +++s+  +++++ + ++++e+++ +q++g+vli++Gv+li
  EHT98126.1   7 LLTSLLTCAGQLCQKQAARQTNRANLAGWLLASLIMLALGMVAWLLVLQRLPVSLAYPMLSINFILVALAARFIWRERMSPLQWAGTVLIVAGVALI 103
                 45555666666777777789999999999******************************************************************98 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.5   6.3e-09   1.1e-05      50     115 ..      39     103 ..      15     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.3e-09
     TMEM234  50 plllNqsgSvlfflllgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                 +l++  +g v + l l++ ++sla p+  s++f++ +l ++++ ++ ++  +++g++l+v+g+al+
  EHT98126.1  39 SLIMLALGMVAWLLVLQRLPVSLAYPML-SINFILVALAARFIWRERMSPLQWAGTVLIVAGVALI 103
                 556667899*****************97.9**********************************98 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   3.6   2.8e-08   5.1e-05       1      93 []       1      96 [.       1      96 [. 0.82

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.8e-08
                    XX-HHHHHHHHHHHHHHHH---------....-----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  1 mnwvllvlAillevvgailLklsegftk....ltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglali 93
                    m+ +l++l  ll ++g++  k+++ +t+    + + l  ++++++ ++   + l+ lpvs+AY+++s i ++l++l++  ++ e++s  +++g +li
      EHT98126.1  1 MSLLLVLLTSLLTCAGQLCQKQAARQTNranlAGWLLASLIMLALGMVAWLLVLQRLPVSLAYPMLS-INFILVALAARFIWRERMSPLQWAGTVLI 96
                    6788999999*********9996655551111445566666888889999999************97.89999999999999***********9997 PP

>> DUF4010  Domain of unknown function (DUF4010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   7.0     3e-06    0.0053      46     110 ..      22      85 ..       4     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
     DUF4010  46 skeepelarllaagillAnavmllrvllivavvnpallvalalpllalallallvaalllrrrek 110
                   ++++ +r+ +ag llA+++ml   ++  ++v ++l v+la+p+l + ++++++aa +++r++ 
  EHT98126.1  22 Q-AARQTNRANLAGWLLASLIMLALGMVAWLLVLQRLPVSLAYPMLSINFILVALAARFIWRERM 85 
                 2.2345677788899999999999999999999999*************************9876 PP

>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.7   3.7e-06    0.0065      44     122 ..      29     106 ..       4     107 .] 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.7e-06
  Mg_trans_NIPA  44 yaylkevlWwaGlltmavGeaanfaayafaPatLvtPLGalsvivsavlasllLkekLkllgllGcllailGstvlvih 122
                     a l  +l +a l+++a+G +a +      P++L  P+ ++  i+ a+ a ++ +e++  l+  G +l ++G  ++  +
     EHT98126.1  29 RANLAGWL-LASLIMLALGMVAWLLVLQRLPVSLAYPMLSINFILVALAARFIWRERMSPLQWAGTVLIVAGVALIGSY 106
                    45555554.799************************************************************9998666 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.4   3.8e-06    0.0068      64     134 ..      32     102 ..       1     105 [. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.8e-06
         TPT  64 flkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGval 134
                 +   +l   ++ +lg v+  + l++ +VS +  + +++ i  ++ +r++ +e++s l +   + iv+Gval
  EHT98126.1  32 LAGWLLASLIMLALGMVAWLLVLQRLPVSLAYPMLSINFILVALAARFIWRERMSPLQWAGTVLIVAGVAL 102
                 4455666667788999999**************************************************98 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   6.5e-05      0.12      29      60 ..      20      51 ..      15      59 .. 0.91
   2 ?   -2.5   0.2       2.9   5.1e+03      44      49 ..      70      75 ..      66      82 .. 0.68
   3 ?   -3.2   0.2       4.8   8.6e+03      48      57 ..      93     102 ..      89     103 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-05
     DUF5345 29 ekerkrkrlrrElllFlliAllilsllllalv 60
                +k++ r+ +r  l+  ll++l++l+l+++a++
  EHT98126.1 20 QKQAARQTNRANLAGWLLASLIMLALGMVAWL 51
                7999***********************99986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
     DUF5345 44 FlliAl 49
                F+l+Al
  EHT98126.1 70 FILVAL 75
                666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.8
     DUF5345  48 Allilsllll 57 
                 ++li+++++l
  EHT98126.1  93 TVLIVAGVAL 102
                 4677777665 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.6   0.00018      0.32      11      46 ..      21      56 ..      19      62 .. 0.91
   2 ?   -2.2   0.1       1.7     3e+03       3      28 ..      78     102 ..      76     105 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       VirB8 11 gsarvqarnwrlvafvslliavlavgavvlllplkt 46
                ++a++q++++ l++++++ +++la+g v++ll l++
  EHT98126.1 21 KQAARQTNRANLAGWLLASLIMLALGMVAWLLVLQR 56
                689***************************998876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       VirB8   3 rqfwderigsarvqarnwrlvafvsl 28 
                 r +w+er++   + a +  +va+v+l
  EHT98126.1  78 RFIWRERMSPLQW-AGTVLIVAGVAL 102
                 5566666654433.333333334444 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.4   0.00024      0.42       7      62 ..       4      64 ..       1      69 [. 0.71
   2 ?    3.3   2.1     0.033        58      12      42 ..      70      99 ..      59     107 .] 0.46

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
     DUF4131  7 lvllalllllllllllllrr.....rprrrvllllllllllallgfalrapqpnandlsql 62
                l++l++ ll+++  l++++      r +   +ll++l++l+++++++l ++q+   +l++ 
  EHT98126.1  4 LLVLLTSLLTCAGQLCQKQAarqtnRANLAGWLLASLIMLALGMVAWLLVLQRLPVSLAYP 64
                3444444444444455544487777777777*********************998887765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.033
     DUF4131 12 lllllllllllllrrrprrrvllllllllll 42
                + +l++l++ +++r+r ++  +++  l+ + 
  EHT98126.1 70 F-ILVALAARFIWRERMSPLQWAGTVLIVAG 99
                3.34445555555554444444444433332 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.5    0.0063        11      24      61 ..       9      56 ..       1      60 [. 0.60
   2 ?    0.8  11.3      0.37   6.7e+02      13      55 ..      35     103 ..      35     106 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0063
      DUF202 24 glallrffl........tgepsalg..kilglilivlgiltllvglvr 61
                  +l+   +        + ++++l+   +++li+++lg++++l++l r
  EHT98126.1  9 TSLLTCAGQlcqkqaarQTNRANLAgwLLASLIMLALGMVAWLLVLQR 56
                333332111333444446666666534667999999999999998876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.37
      DUF202  13 WlRtslalialglallrffl...........................tgepsalgkilglilivlgiltl 55 
                 Wl  sl ++alg + + + l                           ++  s+l +++g++liv+g++++
  EHT98126.1  35 WLLASLIMLALGMVAWLLVLqrlpvslaypmlsinfilvalaarfiwRERMSPL-QWAGTVLIVAGVALI 103
                 555566666666666666555555555555555555555555554443333332.899999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 808.17
//
Query:       EHT98127.1  [L=552]
Description: polymyxin/melittin resistance undecaprenyl phosphate-alpha-L-Ara4N transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-38  131.1  15.1    4.8e-38  131.1  15.1    2.4  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    1.9e-16   60.7  17.0    1.9e-16   60.7  17.0    3.0  4  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1  15.1   5.4e-42   4.8e-38       5     245 .]       7     237 ..       3     237 .. 0.96
   2 ?    1.5   1.0      0.02   1.8e+02      81     129 ..     346     390 ..     311     421 .. 0.74

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 5.4e-42
         PMT   5 llallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvh.pplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplvyl 102
                  ++l++ + +++l +   +  ++++++  +Y+e+s++m++   ++ ++++  g+++++k+++ ++ +  ++  ++ ++++++R+ s + ++++++l y+
  EHT98127.1   7 TVLLVSLFVLYYLLPLEFRNLWQPDET--RYAEISREMLQNgNWITPHFF--GLRYFEKPIAGYWFNTVGQAIFG-HNNFAVRIGSVFSTLMSAILIYW 100
                 5788999999*****************..************666677777..99**************9999999.*********************** PP

         PMT 103 tllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkferkapfsrswwlwllltgvalglavsvKwvglftvllvgllliwelw 201
                 +  +l  ++++al a+++++++ +++ +++y++ld++L+++++++m++++ +  +a++ r+ +l +l++g+a+g++ ++K++++++v +v+ +l+w ++
  EHT98127.1 101 LGCRLFARRTVALTASVIFMTSLLVYGIGTYAVLDPMLTLWMVAAMCSYWFAS-EAQNVRQRILRYLILGLACGMGFMTKGFLALAV-PVLAILPWAIL 197
                 **************************************************996.9*****************************999.*********** PP

         PMT 202 qllgdkslllksivkhllaralaliviPvtlylavftvhfwllf 245
                 + ++++++ ++     l++ + a i  P+++++++  ++fw++f
  EHT98127.1 198 NQRFRELVIYG----PLAIVSAAAISAPWAIAIQQQQPDFWHYF 237
                 **********9....999999999******************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.02
         PMT  81 pyvslRlfsallgslivplvyltllelgfskltallaallvllenslit 129
                 +    ++ ++l+g+ +v+ +  +l   g s++  + a  lv+l+ ++i+
  EHT98127.1 346 N----AWINILFGAICVVALLVVLAPWGLSHRPLYGAHQLVALIMAVIA 390
                 3....45677777777777777777777777777777777777777766 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.77   6.9e+03     114     130 ..       4      20 ..       1      26 [. 0.62
   2 !   60.7  17.0   2.1e-20   1.9e-16       2     155 ..      61     220 ..      60     224 .. 0.80
   3 ?   -3.4   0.2       1.1   9.9e+03      58      88 ..     297     327 ..     291     335 .. 0.56
   4 ?    1.0   3.0     0.049   4.4e+02      15      88 ..     341     416 ..     338     425 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.77
       PMT_2 114 sKytaallliaallyll 130
                 +K t++l+ + +l+yll
  EHT98127.1   4 TKKTVLLVSLFVLYYLL 20 
                 56666666665555655 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 2.1e-20
       PMT_2   2 hPPliawllalftklfgfselairlvsalagvltilllyllarrlfg.kraallaalllavvplfvalsalftpdaplvllwalalylllrale..... 94 
                 +P   +w+ +++ ++fg++++a+r+ s+  ++++++l+y l +rlf  +++al+a+++ ++++l++ +++   +d +l  lw+ a+ +++ ++      
  EHT98127.1  61 KPIAGYWFNTVGQAIFGHNNFAVRIGSVFSTLMSAILIYWLGCRLFArRTVALTASVIFMTSLLVYGIGTYAVLDPML-TLWMVAAMCSYWFASeaqnv 158
                 7999*******************************************999***********99888888855555444.44444444433333334477 PP

       PMT_2  95 knklkywllagvlfGlgflsKytaallliaall..yllisarrilkekkpyl.alllalllfsp 155
                 ++++  +l++g++ G+gf++K + al ++ +++  +++++  ++++e ++y   +++ ++++s+
  EHT98127.1 159 RQRILRYLILGLACGMGFMTKGFLALAVPVLAIlpWAILN--QRFRELVIYGpLAIVSAAAISA 220
                 888999***********************54444555555..8999999999877777777763 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.1
       PMT_2  58 llavvplfvalsalftpdaplvllwalalyl 88 
                  + v+pl++++ a++++ +  +++ a +++l
  EHT98127.1 297 SWVVIPLVFFSIAKGKLPTYILPCFAPLALL 327
                 4556666666666665544444444444444 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.049
       PMT_2  15 klfgfselairlvsalagvltilll..yllarrlfgkraallaalllavvplfvalsalftpdaplvllwalalyl 88 
                 ++f  + +  +l+ a+++v  +++l  + l  r +     l+a +++ + +   a++  f + +p+   +a+al  
  EHT98127.1 341 RVFKVNAWINILFGAICVVALLVVLapWGLSHRPLYGAHQLVALIMAVIAFAGWAVAGAFSLKSPQRNWLAAALCP 416
                 6777788888888888876555554448888888888888888888888776666666777777777666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3837.09
//
Query:       EHT98128.1  [L=297]
Description: polymyxin resistance predicted deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-09   38.2   0.0    1.9e-09   37.5   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0     1e-13   1.9e-09      20     123 ..      19     169 ..       9     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1e-13
                      CHHHHHHHHHHCT--EEEEE-HH..HHCH-..........................................HHHHHHHHHTTEEEEE--SS-- CS
  Polysacc_deac_1  20 ntteilpvLkkykvkatffvigg..lvedy..........................................pdevremaasGveignHtinhs 69 
                      +++++++v+kk++v+  ff++ g  +++++                                           d++ +m a+ +e+g H ++h 
       EHT98128.1  19 GVPALIEVFKKHDVQSSFFFSVGpdNMGRHlwrlmkprflwkmlrsraaslygwdillagtawpgkqigagmRDII-RMTADYHEVGLHAWDHF 111
                      68999*********9999988773457777*****************************************55555.555555*********** PP

                      EG....GGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1  70 nl....krlseeevrreierakdalrkalgreprlfryPygsasatvlevarelgfay 123
                       +      + ee++ ++i++ +dal++++g++++  +  + +a+ +v+++ +  gfay
       EHT98128.1 112 AWqtwaGVWNEEQLIQQIAKGRDALEAIIGKPVTCSAVAGWRADGRVIQAKQTFGFAY 169
                      997777888999*******************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2182.52
//
Query:       EHT98129.1  [L=660]
Description: UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-43  149.5   0.0    1.6e-43  148.9   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    9.7e-26   90.9   0.0    1.3e-25   90.5   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    1.1e-24   87.2   0.0    1.7e-24   86.5   0.0    1.3  1  Formyl_trans_N  Formyl transferase
      4e-21   75.1   0.0    1.3e-20   73.5   0.0    1.8  2  Formyl_trans_C  Formyl transferase, C-terminal domain
    5.3e-05   22.4   0.0    7.7e-05   21.8   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    0.00015   21.7   0.0    0.00029   20.8   0.0    1.5  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.015   14.5   0.0        5.3    6.1   0.1    2.4  2  NAD_binding_4   Male sterility protein
      0.045   12.8   0.0      0.079   12.1   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   7.1e-47   1.6e-43       1     241 []     318     566 ..     318     566 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 7.1e-47
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +l++G++GfiG++l+++ll+ +  ev gld  s+a  +   +   ++ve+d+  +s++ ++  + ++d+++ l a++++ ++  +p +++e +++ +l+
  EHT98129.1 318 VLILGVNGFIGNHLTERLLQDDnFEVFGLDIGSDAISRFVGHPRfQFVEGDISIHSEWIEYHIK-KCDVILPLVAIATPIEYTRNPLRVFELDFEENLK 415
                 79****************9999899**********9999998889***************9775.9********************************* PP

                 HHHHHHHHTCTEEEEEEEGGGGTSCSSSS...BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT....S-TTS.TTSHHH CS
   Epimerase  98 lleaarkagvkrllflsSsevYGkdaeqp...keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr....ngege.vsrvip 187
                 ++  + k+g  r++f s+sevYG  +++    +++++  gp+ k+++ Y+++K++ +++++ay ++ gl+++ +r+fn++Gpr    n  +   sr i+
  EHT98129.1 416 IVRDCVKYGK-RIIFPSTSEVYGMCTDSNfdeDHSNLVVGPInKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRldnlNAARIgSSRAIT 513
                 **********.************9999533569999999**********************************************99888889****** PP

                 HHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 188 alirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +li ++ eg  +++l++ g+++R f +++D +ea+ +++e+ +++ +g+i+niG
  EHT98129.1 514 QLILNLVEGS-PIKLFDGGRQKRCFTDISDGVEALFRIIENKNNNCDGQIINIG 566
                 **********.******************************999999******9 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0     6e-29   1.3e-25       1     331 [.     319     644 ..     319     645 .. 0.82

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 6e-29
                    EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHH.HHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDsss.lerllaevqpdevynLAAqshVdvsfek 94 
                    Li G++GfiG++l+e+Ll+  ++ev+g++  s++     i++         ++++++++gD++ +s+ +e  ++++  d ++ L A     +   +
     EHT98129.1 319 LILGVNGFIGNHLTERLLQDdNFEVFGLDIGSDA-----ISRFVG------HPRFQFVEGDISIHSEwIEYHIKKC--DVILPLVAIATPIEYTRN 401
                    89****************87479****9877765.....555554......4689*******97555156666665..9***************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TT......S---.--SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EE CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEt......tpfy.PrsPYaaaKlyadwivvnyreayglfavngilfnh 183
                    P +++e ++   l+++  + ++g    +r+++ StsEvYG  +++ ++E+       p++  r+ Y+++K   d ++ +y e+ gl  +  + fn 
     EHT98129.1 402 PLRVFELDFEENLKIVRDCVKYG----KRIIFPSTSEVYGMCTDSNFDEDhsnlvvGPINkQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNW 493
                    *********99999988888877....59********************94444444443259********************************* PP

                    ESTTS-TT.....SCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHC.HHCCHHCCCHHHHHH CS
  GDP_Man_Dehyd 184 esprrget.....fvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvref.velaflelgktiewe 273
                     +pr  +         r it+ + +  +g   +l +  +++kR ++ ++D vea+ +++++++    + ++g+  ++++  +e++++el +++  +
     EHT98129.1 494 MGPRLDNLnaariGSSRAITQLILNLVEGSPIKL-FDGGRQKRCFTDISDGVEALFRIIENKN----NNCDGQIINIGNPdNEASIKELAERLLES 584
                    ****8763233345899***********996665.677999*******************987....68999999997752667788888887766 PP

                    .............TTGGCCCEECGG--S.S--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 274 gkgeeevgra.kesgkvvvevdpkyfrp.gevdlllgdaskakeeLgWkpkvsfeelvre 331
                     ++   +++     g  +ve +  y +  ++v+ +   ++ ak+ LgW+p+v++++++++
     EHT98129.1 585 FERHPLRASFpPFAGFREVESSSYYGKGyQDVEHRKPSIRNAKRLLGWTPEVQMNTTIDN 644
                    554433333214567777777666666558999*********************999876 PP

>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   7.8e-28   1.7e-24      54     178 ..      47     174 ..      12     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 7.8e-28
                     CECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSST CS
  Formyl_trans_N  54 kvfeekk...leprsqfeeelaeelkelkadlivlagymkllpkelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDt 145
                     ++++e++   + p +   +  ++ +k++++d+i    y  ll +++++  ++++ n+H+SLLP+++G a+ ++al +G++etGvt h +  + D 
      EHT98129.1  47 RIAAENSipvYAPDEVNHPLWIDRIKSAEPDVIFSFYYRNLLCDDILNCAKQGAFNLHGSLLPKYRGRAPLNWALVNGETETGVTLHRMVKKADA 141
                     44444446778888888889999************************************************************************ PP

                     S-EEEEEEEE--TT--HHHHHHHHHHHHHHHHH CS
  Formyl_trans_N 146 Gailaqkkveiiaedtkeeleqrvadaehkalv 178
                     G+i+aq+++ i +ed + +l +++ d  +++l 
      EHT98129.1 142 GEIIAQQRIAIAEEDNALTLHRKLVDCASELLE 174
                     ************************999998875 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5   1.1e+04      54      78 ..     139     160 ..     124     163 .. 0.66
   2 !   73.5   0.0   5.6e-24   1.3e-20       3      97 ..     202     294 ..     201     297 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
                     S-.TTSEEETT..TEEEE-SBSEEE CS
  Formyl_trans_C  54 aespGtivavdkggllvacgdgall 78 
                     a+  G+i+a++  ++++a  d+al 
      EHT98129.1 139 AD-AGEIIAQQ--RIAIAEEDNALT 160
                     33.78888754..677777777665 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 5.6e-24
                     -GGGGB--TTSBHHHHHHHHHHT-.TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEEEEEEEEETTS--EEHHHHH CS
  Formyl_trans_C   3 kkedgridwnqsaeeihnlvrgls.pwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgallilelqlegkkamsaedfl 96 
                     ++edgri+w+ +a++i nlvr+++ pwPga+++    ++ ++ka+v++++++a  pGt+++ d   ++vacg+gal+i++ q +++  m++ +++
      EHT98129.1 202 TPEDGRINWSLPAKQINNLVRAVTdPWPGAFAFAGTTKFVVWKAKVLTTAHNAR-PGTVLSAD--PFVVACGEGALEIQTGQTPNSVYMNGVQLA 293
                     68**************************************************99.*****977..68*******************999998887 PP

                     H CS
  Formyl_trans_C  97 n 97 
                     +
      EHT98129.1 294 Q 294
                     6 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.4e-08   7.7e-05       1     157 [.     319     474 ..     319     517 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.4e-08
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvt.dkdkleealegvdvvihlasl.vdvagkltedeimkvnvkGTr 97 
                 +++G  GF+G++l ++L++ ++  e  v+ l++++   +++    + +++egD+    + +e  +++ dv++ l ++ +++  + +  ++ +   +   
  EHT98129.1 319 LILGVNGFIGNHLTERLLQDDN-FE--VFGLDIGSDAISRFVGHPRFQFVEGDISiHSEWIEYHIKKCDVILPLVAIaTPIEYTRNPLRVFELDFEENL 414
                 689****************997.55..555556666667888888888******825567999*********8766515566677888999******** PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyesl..hqdaypesKalaEklv 157
                 +++  cvk g +++++ S+ ev g   +  ++ + + +l + +      +y+ sK+l ++++
  EHT98129.1 415 KIVRDCVKYG-KRIIFPSTSEVYGM-CTDSNFDEDHSNLVVGPInkQRWIYSVSKQLLDRVI 474
                 **********.789********999.777778777777776555224456788887776665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00029       1     143 [.     322     490 ..     322     497 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-C.CHHHHHHTT-SEE..EES---TCC..HHHH...........HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdv.edlaealkgadaV..vsalggggk..deeg...........ak 79 
                     G +G +G +l+++ll+++++ev  l   ++ ++++  +++ + vegd++ + e ++ ++k +d++  ++a+++  +  +                
      EHT98129.1 322 GVNGFIGNHLTERLLQDDNFEVFGLDIGSDAISRFVGHPRFQFVEGDISIHsEWIEYHIKKCDVIlpLVAIATPIEytR--NplrvfeldfeeNL 414
                     789*******************9999999********************651669********9955566655555441..23455666666699 PP

                     HHHHHHHHCT--EEEEEEETTTTS.GCGCHHHHHHHHCC.HHH.......HHHHHHHHHHHHH....SSSEEEEEEE CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgd.evpgefgewnkell.kay.......laakraaeellra....sgldwTivrp 143
                     +iv+ + + g kR+++ s+  v+   ++++f+e  ++l+ +++          k+  ++++ a     gl +T  rp
      EHT98129.1 415 KIVRDCVKYG-KRIIFPSTSEVYGmCTDSNFDEDHSNLVvGPInkqrwiySVSKQLLDRVIWAygekEGLRFTLFRP 490
                     9999999987.699999999998634555565554442212221111111356667777764444446777777777 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0023       5.3       3      21 ..     322     340 ..     320     346 .. 0.84
   2 ?    5.9   0.0    0.0028       6.2      76     205 ..     371     492 ..     350     534 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0023
                    -TTSHHHHHHHHHHHHHS- CS
  NAD_binding_4   3 GaTGFLGkvLlekLLrttp 21 
                    G+ GF+G++L e+LL++++
     EHT98129.1 322 GVNGFIGNHLTERLLQDDN 340
                    99*************9864 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0028
                    --HHHHHHHHHH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--..-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEE CS
  NAD_binding_4  76 LseedlqelaeevdviihsaAtvnfdepykellrvNveGtrevlelakklkkl.kvllhvST..ayvngeregeveekvyeegekeekldederak 168
                    +++e ++  ++++dvi+   A  +  e +++ lrv  +  +e l++ + + k  k +++ ST   y  ++++ +++e+           +++    
     EHT98129.1 371 IHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYgKRIIFPSTseVYGMCTDS-NFDED----------HSNLVVGP 455
                    445666666677777777777776666666666666666666666666655544667777775333333333.44443..........45555555 PP

                    TTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-E CS
  NAD_binding_4 169 lkglpntYeqsKalaEklvrearrrsglpvvivRpsi 205
                     ++    Y+ sK l ++++ ++++++gl+++ +Rp +
     EHT98129.1 456 INKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFN 492
                    5666668***************************965 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05     0.079       2     118 ..     317     449 ..     316     483 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
                    EEEEESTTSHHHHHHHHHCTT.TSEEEEEE-TT................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlae.eglevlaltre................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnae 80 
                    ++l++G nG +G +L+++l + +++ev +l+                  e d++  ++  e   + k+dv+  + A     +   ++ + ++++ e
     EHT98129.1 317 RVLILGVNGFIGNHLTERLLQdDNFEVFGLDIGsdaisrfvghprfqfvEGDISIHSEWIEYHIK-KCDVILPLVAIATPIEYTRNPLRVFELDFE 411
                    89*************9876553899****98778899*******999998898876665554443.79**************************** PP

                    HHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS- CS
  RmlD_sub_bind  81 avealAeaaaavgalLihvStDyVFdGekkrpYeedde 118
                       ++ + + ++g  +i+ St  V+   +++++ ed+ 
     EHT98129.1 412 ENLKIVRDCVKYGKRIIFPSTSEVYGMCTDSNFDEDHS 449
                    *************************9999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4922.16
//
Query:       EHT98130.1  [L=326]
Description: Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-31  108.1   0.0    5.5e-31  107.7   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    9.3e-13   48.6   0.1    1.9e-12   47.6   0.1    1.6  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    0.00039   20.0   0.0    0.00057   19.5   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
        0.2   12.2   0.4       0.64   10.6   0.1    2.1  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   1.2e-34   5.5e-31       1     167 [.      11     172 ..      11     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.2e-34
                      EEEEEESS-....TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCH.C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESS CS
  Glycos_transf_2   1 svviptyNe....ektlletlesllaqdpypdfeiivvDDgStDetveileelak.edprvrvirreenvGkagalnaglraatgdyilflDaD 89 
                      svvip+yNe    ++++++t +++++    +d+ei++vDDgS+D ++ ++ ++a+  + ++  + +++n G+++a++ag+++++gd+i++lDaD
       EHT98130.1  11 SVVIPVYNEqeslPALIQRTDDACKS--LNLDYEILLVDDGSQDASATMIADAASlPGSHIVAVLLNRNYGQHSAIMAGFSNVSGDLIITLDAD 102
                      8********77755555555555555..5**************************9888888888888************************** PP

                      EEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHH CS
  Glycos_transf_2  90 depdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreale 167
                      ++ +p+ +++lv+a+++ g+dvv   r  +++++++++        +r  ++  +r ++ ++ ++ +  +++rr +++
       EHT98130.1 103 LQNPPEEIPRLVAAAQE-GYDVVGTVRQNRQDSWFRRQA-------SRTINQMIQRVTGKSMGDYGCMLRAYRRHIID 172
                      *****************.888887777777777777775.......46788888888888888888888888888775 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   4.3e-16   1.9e-12       4     134 ..      10     138 ..       8     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4.3e-16
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesll.aqe..yprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      ++v++p++ne++ l +++  +  a++  + ++e+ +v+d+s+++ + ++   aa lp+ +++ v   rn g  ++   +  ++++v++dl++ +
       EHT98130.1  10 VSVVIPVYNEQESLPALIQRTDdACKslNLDYEILLVDDGSQDASATMIAD-AASLPGSHIVAVLLNRNYGQHSA---IMAGFSNVSGDLIITL 99 
                      89******************99888743477************99999877.78888889999988887676555...66************** PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkrllqffltpkvgavgtpvfllnrstlvs 134
                      D+D    P+ ++rl++++ ++++++vgt + ++++s + +
       EHT98130.1 100 DADLQNPPEEIPRLVAAA-QEGYDVVGTVRQNRQDSWFRR 138
                      *****************9.***********9999885533 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00057       1      93 [.      11     104 ..      11     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
  Glyco_tranf_2_2   1 svviplraseer.hyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcf 93 
                      svvip+++++e  + + +r     k  + + e+++vddgS +  +  +     l +   +    ++ y++  a   G+s+  +dl++ lDaD  
       EHT98130.1  11 SVVIPVYNEQESlPALIQRTDDACKSLNLDYEILLVDDGSQDASATMIADAASLPGSHIVAVLLNRNYGQHSAIMAGFSNVSGDLIITLDADLQ 104
                      89*****98776366777777777888999********************9999988777778789**************************65 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00014      0.64       7      81 ..      23     102 ..      17     163 .. 0.77
   2 ?   -3.6   0.0       3.7   1.7e+04       5      16 ..     169     180 ..     167     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
  Glyco_tranf_2_4   7 Lpefla....hhlalgfd.rilvydndstDgtrailkelpevkllhvdksy.ederrqvellkallaryaeadwvlvvDaD 81 
                      Lp+ ++    + ++l  d +il++d++s+D ++++++  + +   h++    ++ + q++++ a + +   +d ++++DaD
       EHT98130.1  23 LPALIQrtddACKSLNLDyEILLVDDGSQDASATMIADAASLPGSHIVAVLlNRNYGQHSAIMAGFSN-VSGDLIITLDAD 102
                      55555544445556666634****************99888554444433313334445566665544.478999999998 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.7
  Glyco_tranf_2_4   5 diLpeflahhla 16 
                      +i+ ++l +h++
       EHT98130.1 169 HIIDAMLNCHER 180
                      899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2463.77
//
Query:       EHT98131.1  [L=378]
Description: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-131  439.0   0.0   1.7e-131  438.8   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    6.4e-09   34.8   0.1    9.7e-09   34.2   0.1    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    3.2e-08   33.1   0.0    6.4e-08   32.2   0.0    1.5  1  Aminotran_1_2    Aminotransferase class I and II
    1.7e-05   24.3   1.2    4.1e-05   23.0   1.2    1.7  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.094   11.4   0.2        0.2   10.4   0.2    1.5  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.8   0.0  4.7e-135  1.7e-131       3     361 .]      12     373 ..      10     373 .. 0.97

  Alignments for each domain:
  == domain 1  score: 438.8 bits;  conditional E-value: 4.7e-135
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      +e+el av+ev  sgw+t+gp+ +e+E+af++ +g++haiav+s+ta++h++L+alg+++gdeVI+pslt+v+t n ++ lga+pv++Dvd+d 
       EHT98131.1  12 GETELSAVREVFASGWITTGPKCAELERAFCQLTGNQHAIAVTSATAGMHVMLMALGIKAGDEVITPSLTWVSTLNIITLLGATPVMIDVDIDN 105
                      78999***************************************************************************************** PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeel 190
                      ++++p+aieaait++t+aI+pVh++G++admda+ ai ++hg++vieDaAhA G++ykgk+vG  g  a+fSF++ Kn+t++eGG+vvt+d++l
       EHT98131.1 106 LMVTPEAIEAAITPKTRAIIPVHYAGAPADMDAIYAIGQRHGIPVIEDAAHAAGTHYKGKHVGGQG-NAIFSFHAIKNMTCAEGGLVVTDDAAL 198
                      ******************************************************************.58************************* PP

                      HHHHHHHHBTTCECCTCSSCECCS.......S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESC CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkrkaekryvgev.......elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhl 277
                      a+++r l+ hGl ++a++r+++         ++G++y+l +i+AAi l+qLe+l e+++rR +ia++y ++L++ + + +l  p ++++hawhl
       EHT98131.1 199 ADRIRSLKFHGLGVDAFDRQTHGRqpqaeviMPGFKYNLPDISAAIALVQLEKLPEINQRRAAIAQRYLDALKDTP-FKPLVPPAWQHQHAWHL 291
                      **************9999999998999999********************************************99.568888888888***** PP

                      EEEEEHCCHH.HCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 278 yavlveeeae.vkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVvealr 361
                      ++++v+e+a+ ++rd+l++alke+ igt +h+ +++h++++y+e +     +lp++e+ +er++s+pl p++t++dv+rV++alr
       EHT98131.1 292 FIIRVDEQACgMTRDALMQALKEQDIGTGLHF-RAAHTHKYYREHYPH--LSLPATEWNSERICSIPLFPDMTDDDVERVISALR 373
                      ********************************.7***********766..56******************************986 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   2.7e-12   9.7e-09      52     182 ..      32     162 ..      29     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.7e-12
                      HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHH.TTCEEEEEST.TSHHHHHHHCCTTEEEEE CS
  Cys_Met_Meta_PP  52 ptrsvleeriaaLeggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkvlkk.lgievkfvdt.sdleelekaikentklvy 142
                      p    le++ ++L g ++a+av+s +a ++++++al +kaGde+++ +  + +t ++++ +    + i+v++ +    +e++e+ai+++t+++ 
       EHT98131.1  32 PKCAELERAFCQLTGNQHAIAVTSATAGMHVMLMALgIKAGDEVITPSLTWVSTLNIITLLGATpVMIDVDIDNLmVTPEAIEAAITPKTRAII 125
                      77789******************************98899******************998655599999999973689************996 PP

                      EESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS CS
  Cys_Met_Meta_PP 143 lEtptnpllkvvDiekiaklakkagvlvvvDntfaspllq 182
                         p       +D+ +i ++ + +g++v+ D++ a++   
       EHT98131.1 126 ---PVHYAGAPADMDAIYAIGQRHGIPVIEDAAHAAGTHY 162
                      ...666666678********************99998765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.8e-11   6.4e-08      47     194 ..      35     160 ..      28     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.8e-11
                    HHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTH CS
  Aminotran_1_2  47 peleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkea 142
                    +ele a +++ g        ++ a+ v+s +  + ++l++l  + +gde++ p++t+ s  ni+ l g++ v +   + ++  ++ ea+e+a++  
     EHT98131.1  35 AELERAFCQLTG--------NQHAIAVTSATAGMHVMLMALG-IKAGDEVITPSLTWVSTLNIITLLGATPVMID-VDIDNLMVTPEAIEAAITP- 119
                    69999999****........888*******************.***************************99999.559***************9. PP

                    HCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2 143 pegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                         kt+ i+   p +  G+ a+ + + ++    +++++ ++ D a+a++ 
     EHT98131.1 120 -----KTRAII---PVHYAGAPADMDAIYAI---GQRHGIPVIEDAAHAAGT 160
                    .....888887...88888988998888888...999999999999999886 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.2   1.1e-08   4.1e-05      32     232 ..      32     211 ..      29     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.1e-08
                      HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHHHS--S-T CS
  Beta_elim_lyase  32 ktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvklrdlknkea.Gkmdlekleaaikevga 123
                      ++  +Le a+++l+g ++a+ v++ ta+ +++l++l  + g+evi    +   +  t +i +l g++++ ++ + +   +++e++eaai+++ +
       EHT98131.1  32 PKCAELERAFCQLTGNQHAIAVTSATAGMHVMLMALGiKAGDEVITP--S-LTWVSTLNIITLLGATPVMIDVDIDnLMVTPEAIEAAITPKTR 122
                      56789******************************987999999754..4.445556677777777777666665515679**********444 PP

                      TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH.TTSSEEEEESSSTT--SS-EEEEE-HH... CS
  Beta_elim_lyase 124 heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf.syvDsvtmslkKdllanvGgvlafrddele 216
                           ++i +  +     G +   + +++++ai +++gip++ D+A  a        + k +  ++  ++++ + K++++  Gg+++++d+   
       EHT98131.1 123 -----AIIPVHYA-----GAP---ADMDAIYAIGQRHGIPVIEDAAHAAGTH----YKGKHVGgQGNAIFSFHAIKNMTCAEGGLVVTDDA--- 196
                      .....44444333.....555...66778999*************9776655....22233333666678999999999999999999999... PP

                      .HHHHHHHHHHHHT-- CS
  Beta_elim_lyase 217 dylaerveqrkylggg 232
                        la r++  k +g g
       EHT98131.1 197 -ALADRIRSLKFHGLG 211
                      .888888887777655 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   5.5e-05       0.2      75     148 ..      41     115 ..      13     167 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.5e-05
                 HHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--E.B-TTS-BE---G CS
    OKR_DC_1  75 aarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepe.rnalgiiggidl 148
                   ++ g +++  v+  T++   +++   +++gd v+ +  +  S  + + l gatPv +  + +n +  +  i++
  EHT98131.1  41 FCQLTGNQHAIAVTSATAGMHVMLMALGIKAGDEVITPSLTWVSTLNIITLLGATPVMIDVDiDNLMVTPEAIEA 115
                 456667777777777776665555555699*****************************9998888777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2822.14
//
Query:       EHT98132.1  [L=84]
Description: putative glyoxalase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        0.1   11.2   0.0        0.1   11.2   0.0    1.0  1  A-2_8-polyST  Alpha-2,8-polysialyltransferase (POLYST)


Domain annotation for each model (and alignments):
>> A-2_8-polyST  Alpha-2,8-polysialyltransferase (POLYST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-06       0.1     138     175 ..      27      64 ..      18      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-06
  A-2_8-polyST 138 islakkknitthlieeGtgtyaPllesfsykptklerr 175
                   i +   + i t l++ Gt  ++Pl e   y   k+er+
    EHT98132.1  27 IEVSNIQQIHTRLVKTGTPLFRPLSENAYYTGEKYERQ 64 
                   55667789***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 670.36
//
Query:       EHT98133.1  [L=103]
Description: hypothetical protein CKS_3164 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0023   18.0   0.4      0.003   17.7   0.4    1.2  1  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
      0.037   14.4   0.1      0.076   13.4   0.1    1.6  1  DUF4188   Domain of unknown function (DUF4188)
      0.058   13.3   0.2      0.072   13.0   0.2    1.2  1  DUF1416   Protein of unknown function (DUF1416)


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4   4.9e-07     0.003      10      68 ..      10      69 ..       1      76 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.9e-07
                ESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEE.EETSTTEEEEEEEESSHHHHHHHHT CS
         ABM 10 vkpgqaeafldafaeavesllaeepGclgyellr.stedpdevvvieeWeseaaleahlk 68
                v+  +aeaf   +++   +  +++pG+ g+ +++  + +  ++++ + W++ aa++a+  
  EHT98133.1 10 VPQQHAEAFFTHLQKTGVQHAESVPGNTGAFIHQvAQGEWQHFFLATYWRDLAAVKAFAG 69
                5667889999999888777779************87888899**************9876 PP

>> DUF4188  Domain of unknown function (DUF4188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.076      30      71 ..      27      70 ..       1      79 [. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
     DUF4188 30 lreleekk.elGlLgaeslig.srevllvqYwrdvesLeafaks 71
                +++ e+ + ++G   ++ + g  +++ l  Ywrd+ +++afa +
  EHT98133.1 27 VQHAESVPgNTGAFIHQVAQGeWQHFFLATYWRDLAAVKAFAGE 70
                333444445566655555553369******************75 PP

>> DUF1416  Protein of unknown function (DUF1416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.2e-05     0.072      34      88 ..      15      69 ..       6      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
     DUF1416 34 ggayvRLLdssgeFtaevvtsaeGefrFfaapGeWtvRalarkgngdaeveaesg 88
                + a+   L+++g   ae v +++G+f    a+GeW+   la+     a+v+a  g
  EHT98133.1 15 AEAFFTHLQKTGVQHAESVPGNTGAFIHQVAQGEWQHFFLATYWRDLAAVKAFAG 69
                5689999****************************98888877666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 925.16
//
Query:       EHT98134.1  [L=94]
Description: hypothetical protein CKS_3163 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.021   14.1   0.1      0.021   14.1   0.1    1.0  1  DNase_II        Deoxyribonuclease II
      0.055   13.7   0.0      0.074   13.2   0.0    1.2  1  Ribosomal_L5_C  ribosomal L5P family C-terminus


Domain annotation for each model (and alignments):
>> DNase_II  Deoxyribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.4e-06     0.021     120     168 ..      33      81 ..      13      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-06
    DNase_II 120 ysypssgtqyGqsflCvtlseeqlekiakqllyeepliyssnlpetlak 168
                 y ++ +++++ + f+C t +e+q +++a+q ++  p + s + ++t+++
  EHT98134.1  33 YATDVTNQTKSKLFICRTTDEQQAKQLAEQFKIWLPKVNSRKRKATAKS 81 
                 4568889**************************9999988876666655 PP

>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.3e-06     0.074      45      92 ..       8      65 ..       4      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.3e-06
  Ribosomal_L5_C 45 vsfGikeqiifpeieydkd...kgifGmditivttak......tde.earallkelgi 92
                    v  G+ +++ f++ieyd      +i+  d+t  t++k      tde +a++l ++++i
      EHT98134.1  8 VRTGLWPHMHFTDIEYDHRggsYEIYATDVTNQTKSKlficrtTDEqQAKQLAEQFKI 65
                    67899**************777777888888888888887776333588888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 864.65
//
Query:       EHT98135.1  [L=230]
Description: two-component system regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-26   93.2   0.0    1.8e-26   92.5   0.0    1.3  1  Response_reg  Response regulator receiver domain
    5.4e-18   64.8   0.0    1.6e-17   63.4   0.0    1.7  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.076   13.1   0.0       0.14   12.2   0.0    1.4  1  B12-binding   B12 binding domain
      0.091   12.6   0.0        0.2   11.5   0.0    1.5  1  DUF1507       Protein of unknown function (DUF1507)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   3.9e-30   1.8e-26       1     111 [.       6     114 ..       6     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 3.9e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vli++Dd +++ +l+ +l++egy +v+ a dg   l+++++ ++dlillD+++p m+G e+l  +r++  ++pvi++ta ++ +d++ al++gadd+
    EHT98135.1   6 VLIIEDDADAAGVLEAYLKREGY-TVMIAGDGMTGLDHAQRWQPDLILLDVMLPVMNGTEVLAALRRRG-NTPVIMVTAMGDAPDRIGALRYGADDY 100
                   8**********************.********************************************9.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kp++p e+++++
    EHT98135.1 101 VVKPYHPGEVVARV 114
                   *********99988 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   3.5e-21   1.6e-17       2      77 .]     154     227 ..     153     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.5e-21
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++++ltp+ef++L +L++ p r++sr  Lle++ +e++   +r+vd+h+++LR+kLe+++  ++ +  vr+vGYr+
   EHT98135.1 154 QRLDLTPTEFSILVTLMRAPTRPFSRLFLLEHCLPESD-ALERVVDTHVYNLRRKLEAAG-MSDILPAVRSVGYRF 227
                  5789*******************************998.*******************87.556**********97 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.1e-05      0.14      19      88 ..      18      84 ..      15     107 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
  B12-binding 19 vlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvel.lkrirprvkvvvGG 88
                 vl a+l+++g+ V + g      + ++ +++++pd+++l + +   +++++ l+ l +++++p + v + G
   EHT98135.1 18 VLEAYLKREGYTVMIAGDGM---TGLDHAQRWQPDLILLDV-MLPVMNGTEVLAALrRRGNTPVIMVTAMG 84
                 67899999999998887777...67999*************.**************555555555444444 PP

>> DUF1507  Protein of unknown function (DUF1507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.5e-05       0.2      29      55 ..     186     212 ..     182     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF1507  29 tlsqCplyEevlDtqmyGlsrevdfav 55 
                 +l++  + E v+Dt++y l r+++ a 
  EHT98135.1 186 CLPESDALERVVDTHVYNLRRKLEAAG 212
                 99999****************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 2156.07
//
Query:       EHT98136.1  [L=395]
Description: two-component system sensor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-19   70.9   0.0    2.1e-19   70.1   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    7.8e-05   22.6   0.1    0.00018   21.5   0.1    1.6  1  HisKA        His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
       0.17   11.8   0.0       0.33   10.9   0.0    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   3.5e-23   2.1e-19       1     111 [.     278     389 ..     278     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 3.5e-23
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd +rL q++  l +Na+++a+++++ +v+ ++s   ++++ +D G+G++++ l+ +f++f++ ++s++r +gg+GlG+si+k++ve +gGei  +   
  EHT98136.1 278 GDASRLGQVVTILTENALRYAAEGKRFSVTAHTSPAAVTLQFRDYGPGVDPQFLPVIFDRFTRaESSRARHSGGSGLGMSIAKAIVEAHGGEIFARLPA 376
                 7999****************99**********8779***************************99999999************************9999 PP

                 TTEEEEEEEEESS CS
   HATPase_c  99 grGttftftlple 111
                 ++G ++t+ lpl+
  EHT98136.1 377 DGGLQITIALPLT 389
                 **********997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1     3e-08   0.00018       9      67 .]     177     233 ..     175     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3e-08
                 HHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   9 vaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +aHELr PL+a +g ++ + +         +++  i ++  +l++l ++l  ls  eag
  EHT98136.1 177 IAHELRSPLTAAIGRLQGIVDG--VFAPEPQQFSMIMKQLTQLSRLTDELHLLSLAEAG 233
                 8******************996..335566789*****************999998886 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-05      0.33      42     109 ..     293     363 ..     260     384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
  HATPase_c_2  42 NavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglv 109
                  Na ++a ++   ++++v++  ++ a+t++++D Gpg dp+ lp               + +   +G+G+ + k++v
   EHT98136.1 293 NALRYAAEG---KRFSVTAHTSPAAVTLQFRDYGPGVDPQFLPVIFD--RftraessrARHSGGSGLGMSIAKAIV 363
                  888888875...7799********************99985442211..112334444556666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3265.07
//
Query:       EHT98137.1  [L=377]
Description: RND efflux membrane fusion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-19   67.6   0.7    1.7e-18   66.7   0.7    1.4  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    8.9e-15   55.3   0.4    2.5e-12   47.4   0.1    2.4  2  HlyD_3           HlyD family secretion protein
    1.2e-12   47.5   4.9    2.5e-09   36.8   0.2    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
    1.5e-05   24.7   0.0       0.11   12.4   0.0    2.3  2  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.7   3.7e-22   1.7e-18      20     204 ..      78     281 ..      65     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 3.7e-22
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXX.XXXXXXXXX CS
    HlyD_D23  20 arvsarveGwveklyvnatgdkVkkGqpLaelysp....elvaaqeeyllalkakkklkkke...............lleaarerLrll.gvseeqiae 98 
                   ++ r++G+v + + + +g++V++Gq La+l+s     +l +a +++ +a++++++++ +                +l++a+   ++     +++ a+
  EHT98137.1  78 ISLAFRLDGRVITRTTD-IGQHVNAGQVLATLDSNaaqnQLSSATADLASARASEHVAALTLrrmqqlmpggaisrsQLDSAKGDWQAAvSRRQSSEAA 175
                 5678899****999999.***************962222577777777777775544433337777888888888887777776665540344455578 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  99 lektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpetRtvkv 197
                 l++ ++  + ++++ap+ Gv+t+ nv+ Gq+v+++++++t+a   +   ++++ e  la  +  ++ ++t+ + p  + +G+   i+p+ dp+tRt ++
  EHT98137.1 176 LKNAQDNLNWTQLTAPRPGVITAVNVQPGQVVSAAQSVMTLAADGDRDAVFDLAEPSLAEYASSTPFSITLLSNPAIKTQGHFRDISPQADPQTRTWRL 274
                 999999999****************************************************************************************** PP

                 XXXXXXX CS
    HlyD_D23 198 RieldNp 204
                 R+ l+ p
  EHT98137.1 275 RVMLPQP 281
                 ***9976 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0053        24       7      31 ..      85     109 ..      83     136 .. 0.80
   2 !   47.4   0.1   5.6e-16   2.5e-12       2      97 ..     188     282 ..     187     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0053
      HlyD_3   7 dGvvvelnveegevvqagdelleii 31 
                 dG+v       g+ v+ag++l+++ 
  EHT98137.1  85 DGRVITRTTDIGQHVNAGQVLATLD 109
                 899999999*************985 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 5.6e-16
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslenpe 97 
                 l+Ap+ Gv++++nv++g+vv+a + +++++ + +  + + +++  l+       + +++l +++  + +g    isp +d++t++++++v+l++p+
  EHT98137.1 188 LTAPRPGVITAVNVQPGQVVSAAQSVMTLAADGDRDAVFDLAEPSLAEY-ASSTPFSITLLSNPAIKTQGHFRDISPQADPQTRTWRLRVMLPQPP 282
                 89**********************************************5.699***********99****************************94 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.2   5.6e-13   2.5e-09       2      50 .]      77     125 ..      76     125 .. 0.95
   2 !   11.7   0.6   3.9e-05      0.17       4      26 ..     187     209 ..     179     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.6e-13
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                       +s+a +++GrV +     Gq+V+aG+vLa+lDs a q++l+ a a+la
       EHT98137.1  77 EISLAFRLDGRVITRTTDIGQHVNAGQVLATLDSNAAQNQLSSATADLA 125
                      689999****************************************986 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.9e-05
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVka 26 
                      +++ap +G+++++nV+ Gq+V a
       EHT98137.1 187 QLTAPRPGVITAVNVQPGQVVSA 209
                      788999***************87 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00015      0.65      20      48 ..      92     120 ..      84     122 .. 0.83
   2 !   12.4   0.0   2.4e-05      0.11       2      39 ..     187     219 ..     186     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
                    SSSTTCEE-TTSEEEEEECTTEEEEEEBS CS
  Biotin_lipoyl  20 lvkvGdkVkagqvlaeveamKmemeieap 48 
                    +   G++V+agqvla++ +  +++++++ 
     EHT98137.1  92 TTDIGQHVNAGQVLATLDSNAAQNQLSSA 120
                    5678***************9999999885 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.4e-05
                    EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECT CS
  Biotin_lipoyl   2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveam 39 
                    ++++P +G++++     v v++G+ V+a q+++++ a+
     EHT98137.1 187 QLTAPRPGVITA-----VNVQPGQVVSAAQSVMTLAAD 219
                    789999999999.....9**************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2754.16
//
Query:       EHT98138.1  [L=1024]
Description: putative RND efflux transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-155  518.9   9.4     3e-155  518.5   9.4    1.1  1  ACR_tran  AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  518.5   9.4  1.7e-159    3e-155       3    1015 ..      14    1006 ..      12    1012 .. 0.92

  Alignments for each domain:
  == domain 1  score: 518.5 bits;  conditional E-value: 1.7e-159
                  HHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-H CS
    ACR_tran    3 kffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdi 99  
                  + +++++ +++ ++l+++ +G+ls++ lP ++ P ++  t  vs++ pGa  e + + vt+ lE++l+ ++ l+ ++S++++g++ i ++  d+t++
  EHT98138.1   14 AWALAHQQLVVFFMLLVMTTGVLSYIDLPRNEDPAFTIKTAVVSAQWPGATVEDTMQLVTDTLEKKLQETPFLDFIESETRAGKAVIFVNLRDDTPP 110 
                  5688899999*************************************************************************************** PP

                  HHHHH...HHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran  100 diArq...qvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  d+      q+ +++q + ++LP++vq p+++  + +++   ++++t++    ++ elrd ++ +i++ L  v+  g+++l G++e+ + i+ +p +l
  EHT98138.1  111 DQVPTiwyQIRKKMQDIASSLPQGVQGPTVND-EFGDTYGTIYGFTAD--GFSPRELRDKVD-EIRRSLMDVPDMGKITLPGEQEEHIVIAFSPRQL 203 
                  *98643339****************9888875.456667777899999..89*******987.69******************************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEE.ESSSSSEEEETTEEEEEEEEEEETT CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelg.aeeerlaatfngkpavllevkklpg 289 
                  a +gltl +v++al++qn+ ++aG +  ++e++ ++++g+l+sa++++ i++ +     + l  +A+++l+ ae  +   ++ng+p+++l++ ++p 
  EHT98138.1  204 AGMGLTLREVSDALAAQNAVAPAGVIRTDKENIALHVSGALTSADNLKAITL-HIGQRFIPLTSIATITLQpAEPPASTFRVNGEPGIGLAISMAPT 299 
                  ****************************************************.55567899********99345578899***************** PP

                  SBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHH CS
    ACR_tran  290 anaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNll 386 
                   n ++  +a+++++e ++++lP+g+ +v + d++++v+++++  v  L ea++ +vl +  F   +ra l++a a+Pl+l +tf+ + + g++l  +
  EHT98138.1  300 GNMLKFGQAIHARMETIAAQLPHGITMVKIADQSTVVKTAVSGFVRVLAEAVL-IVLAISFFSLGFRAGLVVAAAIPLVLAMTFVGMTVAGIGLQRI 395 
                  *************************************************9975.56666777778******************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
    ACR_tran  387 tLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltP 483 
                  +L++L +A Gl+vDdA++ vE+++ +le+ g ++ +aa  + k+ +++++ ++lv++a f+P+ f   + G+   ++   +++++l s +va+ ++P
  EHT98138.1  396 SLGALIIALGLLVDDAMITVETMVSRLEA-GDSKAQAATFAFKTTAFPMLTGTLVMIAGFIPVGFAASSAGEYCYSLFAVVLISLLCSWVVAILFSP 491 
                  *****************************.******************************************999999999**************** PP

                  HHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHH CS
    ACR_tran  484 alcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvl 580 
                  ++  +lL e+    +             + r Y++ll +vl+ r+ ++++al+ll++ ++  + +  ef+P  d+ +l++ + l + +s+++t++  
  EHT98138.1  492 VIGTWLLTEQVTAPS--------PPPGLMARCYRRLLDRVLHYRWTTVISALLLLGMGIAGTTLMQGEFFPASDRPELLVNLSLAANASQSETTRRT 580 
                  **********99875........677788899***************************************************************** PP

                  HHHHHHHHTTTTEEEEEEEECEC......S.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEE CS
    ACR_tran  581 kqvekilkekpevesvfavtGfa......e.sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvr 670 
                  +q+e+ l+++ +v++  + +G        + +    + n a++ +  k  + r           +r+r+ l++    + +   +  +  le    v 
  EHT98138.1  581 AQLETLLRADHDVDHFSSYVGAGavrfylPmEVLLDNENVAQLVVVTKNLEAR-----------DRVRRRLEATLARD-FSDLTARVAPLELGPPVG 665 
                  *****************999964111111112334566666666666666666...........44444444433333.112233444567788888 PP

                  EEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GG CS
    ACR_tran  671 selqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleed 767 
                    l++ + g d+++++ +ae+l+a+l  +p+  +v++++ e +++++ve+++ +a ++Gvs + i +tl+t ++gs v+++ +++r ++vv+r +++
  EHT98138.1  666 WPLKYRVTGPDYSKVRDIAEKLAAQLSRSPNTREVNMTAGEPEREINVEVNQTAARAVGVSSESIASTLNTVMSGSTVTTVRDHNRLIDVVLRGNDR 762 
                  9999999****************************************************************************************** PP

                  GSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT....SSTTEEEEEEHHHHHHHHHHC CS
    ACR_tran  768 lrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkv..klpegvtiewtgqaeqeqeasn 862 
                   r++   l++l + +++g+ +pl++va+++++   + i r ++ + ++++ ++a+ +   +++++      ++  +lp+g+ ie +g+ ++ ++ ++
  EHT98138.1  763 ERQDTAILDSLMLNTASGQKIPLGQVATLKWQLDDPVIWRRQRLPYITVQTDIAPEQRAETVSDQLRPGLDTLraTLPAGYAIEEGGTVAESNKGNS 859 
                  *****************************************************99999999998887554443226********************* PP

                  HHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHH CS
    ACR_tran  863 sllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaa 959 
                  s+ ++++++l  + ++L ++ + +s  ll ll+ P++l G +la+l  g+++  +a+ G+i+l G+  +Na+++++ + +  +  g+   +ai +aa
  EHT98138.1  860 SVFAVLPVTLCCMLVLLMLQLKRFSRMLLALLMAPFGLPGIVLAMLPGGTPMGFVALLGIIALAGMIIRNAVIMISEVDSHAQ-AGMAQGDAIRHAA 955 
                  ****************************************************************************9988877.9999********* PP

                  HHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  960 keRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPv 1015
                  ++R rPiL+Ta+aai+G+lP+            p++ +++gGl+t t+ tL l+P+
  EHT98138.1  956 LHRARPILLTACAAIFGMLPISHQV-----FWGPMAFAIIGGLITGTLVTLTLLPA 1006
                  ********************76554.....556**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1024 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 6990.16
//
Query:       EHT98139.1  [L=552]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-48  163.2  19.0    4.9e-48  163.2  19.0    4.3  5  MCPsignal       Methyl-accepting chemotaxis protein (MCP) sig
    1.4e-12   47.6   6.3    1.4e-12   47.6   6.3    4.0  3  4HB_MCP_1       Four helix bundle sensory module for signal t
    2.9e-09   37.2   0.4    1.2e-07   32.0   0.1    3.6  3  HAMP            HAMP domain
    6.4e-08   32.7   4.2    6.4e-08   32.7   4.2    4.4  5  TarH            Tar ligand binding domain homologue
     0.0093   16.2  31.5       0.17   12.2   0.7    5.9  6  DUF948          Bacterial protein of unknown function (DUF948
  ------ inclusion threshold ------
      0.017   15.5   1.7      0.017   15.5   1.7    3.7  4  Mobilization_B  Mobilization protein B
       0.44   10.0  13.6       0.54    9.7   1.9    2.4  2  Mce4_CUP1       Cholesterol uptake porter CUP1 of Mce4, putat
       0.84   10.0   3.6         40    4.7   1.6    3.2  2  CLZ             C-terminal leucine zipper domain of cyclic nu
        1.2    7.0  19.0      0.034   12.1   3.0    3.0  3  Prominin        Prominin
        1.6    8.4  12.4       0.25   11.0   0.4    3.6  3  Peptidase_M9_N  Peptidase family M9 N-terminal
        1.9    8.6  20.1       0.05   13.6   4.2    4.2  5  DUF1664         Protein of unknown function (DUF1664)
        2.2    6.8   8.9       0.13   10.9   0.7    2.6  3  DUF4455         Domain of unknown function (DUF4455)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4      0.14     2e+02     113     143 ..      66      96 ..      39     123 .. 0.64
   2 ?    2.1   0.3       0.1   1.5e+02      98     167 ..     208     278 ..     205     279 .. 0.60
   3 !    6.8   3.8    0.0037       5.5      97     159 ..     253     312 ..     240     323 .. 0.54
   4 !  163.2  19.0   3.3e-51   4.9e-48       1     172 []     322     479 ..     322     479 .. 0.98
   5 ?   -0.9   0.8      0.83   1.2e+03     134     169 ..     486     520 ..     480     523 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH CS
   MCPsignal 113 rqrveegselveetgealkeiveavaevadl 143
                 r+++++ s + +e+++++++i +++++++d 
  EHT98139.1  66 RHQTATDSAKQAEAEQKINTIINNIKSLNDY 96 
                 4455555666666777777777777777664 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
                 ............HHHHHHHHHHHHHHHHHCC.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  98 iqkeindsvesleetrqrveegselveetge.alkeiveavaevadlvqeiaaaseeqsasieevnqavee 167
                 i  +i++s++s+++t  +v++ ++l++ +      ei +++   +dl++ ++++     +++++v+++ ++
  EHT98139.1 208 IIVGIKRSLTSIKDTMAEVSSNLDLTRLAPVlRKDEIGQTAMAFNDLLKRVSTTLLSVNHAAQSVSTGSTQ 278
                 55667777778888888887777777665431233566666666666666666666666666666665554 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0037
                 .............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  97 eiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasie 159
                 ++ k + +++ s++++ q v++gs++++  +e+l+   +++++ a++++e +++ + +s ++ 
  EHT98139.1 253 DLLKRVSTTLLSVNHAAQSVSTGSTQIAAGNEDLS---SRTEQQAASLEETSVSMATLSDTVR 312
                 34455556666666666666666666666666654...3444444445555555554444444 PP

  == domain 4  score: 163.2 bits;  conditional E-value: 3.3e-51
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal   1 sdlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 s+la++a++  +++g+ v++++++m+ei+ ss++isdi+  i++ia+QTN+LALNAa+EAARAGe+GrGFaVVA+EVr+LA+rs  aa+ei++li    
  EHT98139.1 322 SNLANNANKLSRQNGEAVSQMLTTMDEIRGSSAKISDITGLIEGIAFQTNILALNAAVEAARAGEHGRGFAVVASEVRNLAQRSSSAAREIKELI---- 416
                 57899******************************************************************************************.... PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                           + ++++ve+g++++ + g++  ++ +a+++vadlv+eiaaa++eqs++ie+v qa+ ++++vt
  EHT98139.1 417 ----------TTSVSQVEQGLTQATSVGSNSDNVGHAIQQVADLVNEIAAATAEQSKGIEQVHQAIGQMDEVT 479
                 ..........8999********************************************************986 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.83
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 134 veavaevadlvqeiaaaseeqsasieevnqaveeva 169
                 ve++++ ++++qe a + + + ++  +vn++v++va
  EHT98139.1 486 VEEASSASKSLQEQAETLSRLVSTF-KVNESVTQVA 520
                 4555555555555555555554443.4566665554 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   6.3   9.1e-16   1.4e-12       2     181 .]       1     183 [.       1     183 [. 0.94
   2 ?   -4.1   6.7       6.6   9.9e+03      10     138 ..     198     331 ..     185     361 .. 0.41
   3 ?    2.0   2.8     0.091   1.4e+02      83     179 ..     400     495 ..     392     500 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 9.1e-16
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieeleaeidkllekyek 100
                 ++i ++L+l+f+llal l+++ +v+l  ++  ++ +e +  + + +ikdl++  + +++l  +l+++  ++d+a+++e +++i+++ ++i +l   y+ 
  EHT98139.1   1 MTITQRLVLAFSLLALSLCALVAVSLSVISGFQSRFEYVQVNAIPSIKDLNKSISATNQLGLALYRHQTATDSAKQAEAEQKINTIINNIKSLNDYYMA 99 
                 89***********************************************************************************************98 PP

   4HB_MCP_1 101 tilteeE.kelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegr..parekliealeelvdlnlkvAeeaykdnkasy 181
                   + ++E ke+    +++l+a r++   +l+++++ +++   +l++++     a++k+++   + ++ln++ ++ + ++n++ y
  EHT98139.1 100 NDISSDEdKEMTVGANRNLDAVRSALPAFLAASRSHNNELSLSLLQSDNGigAAARKMESDFTKQIELNIQIGDALRAQNNQIY 183
                 8777777255666799***********************99999988766569***************************9987 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6.6
   4HB_MCP_1  10 llflllallliivG.vvGlyslkk.inknletmYedrllpikdlgeikanlrelradllelilt...kdkaekdellkdieeleaeidkllekyektil 103
                 +l l    + iivG   +l+s+k+ +++ ++++   rl p+    ei +++++ + +l ++  t    ++a  + + +   ++ a +++l ++ e+   
  EHT98139.1 198 ILLLGAFSINIIVGiKRSLTSIKDtMAEVSSNLDLTRLAPVLRKDEIGQTAMAFNDLLKRVSTTllsVNHA-AQSVSTGSTQIAAGNEDLSSRTEQQAA 295
                 44444444444445223444444213333444444455554433333333333333333333221102222.222222234444444444444444444 PP

   4HB_MCP_1 104 teeEke.lleefkeqlnaYrevrkkvlelakegkkd 138
                   eE    ++++ + + +  e+  ++ +la++ +k 
  EHT98139.1 296 SLEETSvSMATLSDTVRQNAEGAVQASNLANNANKL 331
                 444422245555555555555555555555444443 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.091
   4HB_MCP_1  83 dieeleaeidkllekyektilteeEke..lleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvdlnlkvAeeaykdnka 179
                 ++ +++ +   ++++   t++ + E+   +++++ ++ ++   ++++v +l++e     A    +++g ++  ++i+ ++e+ ++n+++ eea+ ++k+
  EHT98139.1 400 NLAQRSSSAAREIKELITTSVSQVEQGltQATSVGSNSDNVGHAIQQVADLVNEIAAATA---EQSKGIEQVHQAIGQMDEVTQQNASLVEEASSASKS 495
                 556666666777777777777777754337778888888888889999999988775544...345555888999999999999999999999988876 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.6   5.3e+03      15      30 ..     152     166 ..     149     168 .. 0.83
   2 !   32.0   0.1   8.1e-11   1.2e-07       6      51 ..     212     258 ..     209     260 .. 0.94
   3 ?    0.1   0.0      0.71   1.1e+03      16      28 ..     268     289 ..     261     301 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.6
                 HHHHHHTTTBTSSTCC CS
        HAMP  15 raarriaaGdldtrlp 30 
                 +aar++ + d++++++
  EHT98139.1 152 AAARKMES-DFTKQIE 166
                 79999999.*999976 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 8.1e-11
                 THHHHHHHHHHHHHHTTT.BTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   6 ilrPLrrLaraarriaaG.dldtrlpvsgrDEiGeLarafNaMldrL 51 
                 i r+L  +++++++++++ dl+   pv ++DEiG+ a afN++l+r+
  EHT98139.1 212 IKRSLTSIKDTMAEVSSNlDLTRLAPVLRKDEIGQTAMAFNDLLKRV 258
                 6799************988*************************997 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.71
                 HHHHHTTT.........BTSST CS
        HAMP  16 aarriaaG.........dldtr 28 
                 aa++++ G         dl++r
  EHT98139.1 268 AAQSVSTGstqiaagneDLSSR 289
                 5555555555555558888888 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   4.2   4.3e-11   6.4e-08       5     145 ..       1     138 [.       1     161 [. 0.91
   2 ?   -2.4   0.1       2.5   3.8e+03      29      34 ..     215     220 ..     189     268 .. 0.56
   3 ?   -2.1   3.3         2     3e+03      33      70 ..     279     313 ..     260     342 .. 0.60
   4 ?    2.9   0.0     0.061        91     131     171 ..     374     414 ..     367     420 .. 0.88
   5 ?   -1.1   1.0         1   1.5e+03      32      93 ..     432     492 ..     414     503 .. 0.49

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.3e-11
                 XXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHHHHHHHHHH CS
        TarH   5 isIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaedakellaraeeslaqseeawka 103
                 ++I  rL+l+  ll++ l++  +++ls +s  +++++ v+ n ++++ +L+++ ++  q  l+L+r      a+++++++e+ +++++ ++++++  + 
  EHT98139.1   1 MTITQRLVLAFSLLALSLCALVAVSLSVISGFQSRFEYVQVNAIPSIKDLNKSISATNQLGLALYR---HQTATDSAKQAEAEQKINTIINNIKSLNDY 96 
                 699***************************************************************...666666666666666777777777777778 PP

                 HHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HH CS
        TarH 104 Ylalprtaeeeealaaelkakykalqdglapliaaleagnle 145
                 Y+a   +++e+++ +  ++ + +a++++l +++aa +++n e
  EHT98139.1  97 YMANDISSDEDKEMTVGANRNLDAVRSALPAFLAASRSHNNE 138
                 9***********************************999875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
                 SSSSHH CS
        TarH  29 glsgls 34 
                 +l++++
  EHT98139.1 215 SLTSIK 220
                 222222 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2
                 HHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
        TarH  33 lsrsndalrevytnrlqqqaaLaearvsllqaRltLnr 70 
                 + + n++l      + qq+a L e++vs+++ ++t+ +
  EHT98139.1 279 IAAGNEDLSSRT--E-QQAASLEETSVSMATLSDTVRQ 313
                 555555555542..2.4577777777777766666655 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.061
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH... CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayeaLrk 171
                 +l ++++a +ag++ + f++++ ++++l +  ++a++++++
  EHT98139.1 374 ALNAAVEAARAGEHGRGFAVVASEVRNLAQRSSSAAREIKE 414
                 8999*************************999999988665 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 1
                 SHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHH..HHHHTTTSSSSSSHHHHHHHHH CS
        TarH  32 glsrsndalrevytnrlqqqaaLaearvsllqaRltLnra..giaaladeaedakellaraees 93 
                 ++ ++ d++ ++   + q ++ ++e+ ++ ++++  + ++  +i  ++  +++ ++l+++a + 
  EHT98139.1 432 SVGSNSDNVGHA--IQ-QVADLVNEIAAATAEQSKGIEQVhqAIGQMDEVTQQNASLVEEASSA 492
                 555555555444..33.44444455555555555554443113333444444446666665544 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.4    0.0079        12       8      59 ..       9      65 ..       7      95 .. 0.74
   2 !   12.2   0.7   0.00011      0.17       8      85 ..     202     280 ..     195     284 .. 0.75
   3 !    9.1   1.1     0.001       1.5      20      86 ..     247     313 ..     243     316 .. 0.93
   4 ?    3.8   1.0     0.047        70      34      75 ..     320     361 ..     295     377 .. 0.59
   5 ?    5.7   3.0     0.012        18      20      83 ..     394     453 ..     359     470 .. 0.56
   6 ?    5.5   2.5     0.013        20      34      78 ..     467     511 ..     451     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0079
      DUF948  8 iAFvvLviflivvllklkktldeaaatieelekqvdpilkevedllakvne.....l 59
                +AF++L++ l+ ++    ++++ ++++ e ++ ++ p +k++++ ++ +n+      
  EHT98139.1  9 LAFSLLALSLCALVAVSLSVISGFQSRFEYVQVNAIPSIKDLNKSISATNQlglalY 65
                699******999999999*********************************444431 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
      DUF948   8 iAFvvLvifliv.vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvs 85 
                 +AF++ +i+ i+  l ++k+t+ e+++ ++ ++       +e+ ++    n+ll+ v+  l +v++  ++v + +++++
  EHT98139.1 202 GAFSINIIVGIKrSLTSIKDTMAEVSSNLDLTRLAPVLRKDEIGQTAMAFNDLLKRVSTTLLSVNHAAQSVSTGSTQIA 280
                 5777777777753677888888888888888886666667788888888888888888888888888888888777765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.001
      DUF948  20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 + +  +++l+++++t+ ++++ ++++++ ++++ a  ++l +  +++ +++++   ++a+l+++v++
  EHT98139.1 247 TAMAFNDLLKRVSTTLLSVNHAAQSVSTGSTQIAAGNEDLSSRTEQQAASLEETSVSMATLSDTVRQ 313
                 667788999*******************************************************986 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.047
      DUF948  34 tieelekqvdpilkevedllakvnelledvneklekvdplte 75 
                 +  +l +++++++++  ++++++ ++++++++ ++k+  +t 
  EHT98139.1 320 QASNLANNANKLSRQNGEAVSQMLTTMDEIRGSSAKISDITG 361
                 334455566666666666666666666666666666666655 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.012
      DUF948  20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlges 83 
                 v  ++++++++ +++ +e+++ ++  + +ve+ l+++      v + +++v + +++vadl + 
  EHT98139.1 394 VASEVRNLAQRSSSAAREIKELITTSVSQVEQGLTQATS----VGSNSDNVGHAIQQVADLVNE 453
                 444445555555555555555555555555555555444....444444444444444444333 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.013
      DUF948  34 tieelekqvdpilkevedllakvnelledvneklekvdplteava 78 
                 ++++   q+d+++++ + l++++    + ++e+ e++ +l++ ++
  EHT98139.1 467 QVHQAIGQMDEVTQQNASLVEEASSASKSLQEQAETLSRLVSTFK 511
                 344444899****************************99998775 PP

>> Mobilization_B  Mobilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.9   7.3e+03      58      85 ..     246     273 ..     233     278 .. 0.75
   2 ?   15.5   1.7   1.1e-05     0.017      14      79 ..     291     358 ..     283     369 .. 0.72
   3 ?    6.8   3.8    0.0054       8.1       9      81 ..     387     462 ..     378     472 .. 0.79
   4 ?   -0.3   2.0      0.83   1.2e+03      10      58 ..     462     501 ..     457     531 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.9
  Mobilization_B  58 qagaawvelakelrevaaelakaaqsar 85 
                     q++ a+ +l k +  +   + +aaqs  
      EHT98139.1 246 QTAMAFNDLLKRVSTTLLSVNHAAQSVS 273
                     7777888888888888778888887754 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.1e-05
  Mobilization_B  14 nelaeeieplaqsmatladearqviaevqqase.eqaaewlkaqr.qagaawvelakelrevaaelak 79 
                     ++ a+ +e  + smatl+d  rq    + qas+ ++ a+ l++q+ +a++       e+r  +a++++
      EHT98139.1 291 EQQAASLEETSVSMATLSDTVRQNAEGAVQASNlANNANKLSRQNgEAVSQMLTTMDEIRGSSAKISD 358
                     45689999*****************9999999733444444433314555566666666766666664 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0054
  Mobilization_B   9 ksrginelaeeieplaqsmatladearqviae.vqqase..eqaaewlkaqrqagaawvelakelrevaaelakaa 81 
                     + rg   +a+e+  laq  ++ a e ++ i+  v q  +   qa++  ++  + g a +++a  + e+aa  a+ +
      EHT98139.1 387 HGRGFAVVASEVRNLAQRSSSAAREIKELITTsVSQVEQglTQATSVGSNSDNVGHAIQQVADLVNEIAAATAEQS 462
                     57999********************99988641334332226999999999********99998888887666544 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.83
  Mobilization_B  10 srginelaeeieplaqsmatladearqviaevqqaseeqaaewlkaqrq 58 
                     s+g       ie + q++  + + ++q  + v++as   a++ l++q +
      EHT98139.1 462 SKG-------IEQVHQAIGQMDEVTQQNASLVEEASS--ASKSLQEQAE 501
                     444.......444444444443333444444444432..2222333333 PP

>> Mce4_CUP1  Cholesterol uptake porter CUP1 of Mce4, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.2    0.0087        13      31     127 ..     242     345 ..     223     351 .. 0.78
   2 ?    9.7   1.9   0.00036      0.54      23     102 ..     430     509 ..     424     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0087
   Mce4_CUP1  31 erlGesltdlnevLdelNprlpqlredireladladvYadaapdl.......ldaLdnavttsrTiveqqaeLdalllaavglsntgadllerngdnLi 122
                 +++G++  ++n++L+++ + l ++++  +++ + ++  a+  +dl          L+++++  +T+ +  ++ ++  ++a +l+n++++l ++ng+ + 
  EHT98139.1 242 DEIGQTAMAFNDLLKRVSTTLLSVNHAAQSVSTGSTQIAAGNEDLssrteqqAASLEETSVSMATLSDTVRQNAEGAVQASNLANNANKLSRQNGEAVS 340
                 678888888888888877777777777777777777777666666222222156899999999999999999999999999999999999999999988 PP

   Mce4_CUP1 123 rlaad 127
                 +++++
  EHT98139.1 341 QMLTT 345
                 77765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00036
   Mce4_CUP1  23 aeALeGrGerlGesltdlnevLdelNprlpqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdallla 102
                 a+++    +++G++++++ ++++e+ + + + ++ i+++ ++    +++ ++  + +++a+  s++++eq++ L++l+++
  EHT98139.1 430 ATSVGSNSDNVGHAIQQVADLVNEIAAATAEQSKGIEQVHQAIGQMDEVTQQNASLVEEASSASKSLQEQAETLSRLVST 509
                 778888899*****************************************************************998765 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.064        95      20      45 ..      70      95 ..      64      99 .. 0.85
   2 ?    4.7   1.6     0.026        40      19      68 ..     454     503 ..     444     506 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.064
         CLZ 20 akagaeqkeleekverLessLeaLqt 45
                a  +a+q e+e+k++ + +++++L++
  EHT98139.1 70 ATDSAKQAEAEQKINTIINNIKSLND 95
                566799***************99975 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.026
         CLZ  19 aakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkL 68 
                  a+a aeq +  e+v++  ++++  +++ a L++e +s+ + L++  + L
  EHT98139.1 454 IAAATAEQSKGIEQVHQAIGQMDEVTQQNASLVEEASSASKSLQEQAETL 503
                 4777888888888999999************************9988877 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.8      0.16   2.4e+02     378     441 ..     153     212 ..      45     231 .. 0.53
   2 ?   12.1   3.0   2.3e-05     0.034     644     742 ..     294     420 ..     202     423 .. 0.75
   3 ?    4.7   3.7     0.004         6     224     330 ..     413     519 ..     407     525 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.16
    Prominin 378 lakkiprealdavisdle.nterssktfddvvekyekyrwliglivcsllllivvililgLlcGi 441
                  a    r++ +++++++e n++       +  + y+k+ w++ +   +l++l +  + + +++Gi
  EHT98139.1 153 AA----RKMESDFTKQIElNIQIGDALRAQNNQIYSKTVWMMTCAS-LLIILLLGAFSINIIVGI 212
                 33....4445666666666666555555555666666666555433.333333333334445554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.3e-05
    Prominin 644 k.......................knlkqslkneaqdlraiqqelvlplessvkklkksvkklde.....ensdlqesikkllaaveraenflkkngse 714
                                         ++  ++l n+a++l++ + e v ++ +++++++ s  k+++     e+  +q++i  l aave+a    + +g  
  EHT98139.1 294 AasleetsvsmatlsdtvrqnaegAVQASNLANNANKLSRQNGEAVSQMLTTMDEIRGSSAKISDitgliEGIAFQTNILALNAAVEAARAGEHGRGFA 392
                 222233333333333333333455577799***********************************99999999************************** PP

    Prominin 715 iinneskklldrileqfeeYidwvieev 742
                 ++++e ++l++r  +  +e  + + ++v
  EHT98139.1 393 VVASEVRNLAQRSSSAAREIKELITTSV 420
                 **********999988877776666666 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.004
    Prominin 224 ldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcldqlpnvde 322
                 ++l +t+ s+v + L++ ++++ n  ++ ++++qv +l +e+   +++ ++g+++v + + q+ + + q+++  +  ss+++   ++ ++l+ l ++ +
  EHT98139.1 413 KELITTSVSQVEQGLTQATSVGSNSDNVGHAIQQVADLVNEIAAATAEQSKGIEQVHQAIGQMDEVTQQNASLVEEASSASKSLQEQAETLSRLVSTFK 511
                 567778888888899999999999999999999999999999999999999999999888876555333222222222222323445555577777777 PP

    Prominin 323 vlealeev 330
                 v e++++v
  EHT98139.1 512 VNESVTQV 519
                 77777776 PP

>> Peptidase_M9_N  Peptidase family M9 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2       0.1   1.5e+02      31      63 ..      68     100 ..      49     106 .. 0.84
   2 ?   11.0   0.4   0.00017      0.25      89     146 ..     304     361 ..     298     382 .. 0.87
   3 ?    1.0   1.3       0.2     3e+02     112     149 ..     474     511 ..     429     521 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.1
  Peptidase_M9_N  31 satgdsakavfseanmqavanalkqeaaaYtge 63 
                     ++ +dsak++  e+++++++n++k+    Y  +
      EHT98139.1  68 QTATDSAKQAEAEQKINTIINNIKSLNDYYMAN 100
                     566789999999999999999999988888665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00017
  Peptidase_M9_N  89 vgdyssalsqavaqaldaflanpnakdvtdeqgevlaelliliDsakqnaetlsvvkr 146
                     + ++s++++q+ + a++a    +na++ ++++ge+++++l+ +D ++     +s+++ 
      EHT98139.1 304 MATLSDTVRQNAEGAVQASNLANNANKLSRQNGEAVSQMLTTMDEIRGSSAKISDITG 361
                     568999**************************************99887777766665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.2
  Peptidase_M9_N 112 nakdvtdeqgevlaelliliDsakqnaetlsvvkrlLn 149
                     ++ +vt+++ + ++e+     s +++aetls + + ++
      EHT98139.1 474 QMDEVTQQNASLVEEASSASKSLQEQAETLSRLVSTFK 511
                     34566777778888888888888888888888777665 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.6   5.4e+03      94     105 ..      81      92 ..      55     125 .. 0.62
   2 ?    1.1   0.3      0.25   3.8e+02      44     109 ..     217     282 ..     207     300 .. 0.52
   3 ?    2.8   1.5     0.078   1.2e+02      44      97 ..     266     319 ..     249     353 .. 0.69
   4 ?    3.1   0.2      0.06        90      77     120 ..     408     454 ..     392     456 .. 0.53
   5 ?   13.6   4.2   3.3e-05      0.05      44     113 ..     438     510 ..     424     519 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.6
     DUF1664  94 edlseigedves 105
                 +++++i ++++s
  EHT98139.1  81 QKINTIINNIKS 92 
                 222222222222 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.25
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkea 109
                 +s+   + +vs++l  t+     r d+++++  + +++ k ++  + +v++  +++++ ++++ + 
  EHT98139.1 217 TSIKDTMAEVSSNLDLTRLAPVLRKDEIGQTAMAFNDLLKRVSTTLLSVNHAAQSVSTGSTQIAAG 282
                 445555555555555555555555555555555555555555555555555555555444444443 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.078
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredls 97 
                 ++ ++++ + s+++aa  ++Lssr ++  ++l+e++   + +++ v +  e+  
  EHT98139.1 266 NHAAQSVSTGSTQIAAGNEDLSSRTEQQAASLEETSVSMATLSDTVRQNAEGAV 319
                 445566666778999999999999999999999999888888888876555433 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.06
     DUF1664  77 eqkeiskeikeevtevredlse...igedvesvkeavegleskleri 120
                 +  ei++ i+  v++v+++l++   +g+++++v +a+++++  +++i
  EHT98139.1 408 AAREIKELITTSVSQVEQGLTQatsVGSNSDNVGHAIQQVADLVNEI 454
                 34455555666666665554432225666666666666666655555 PP

  == domain 5  score: 13.6 bits;  conditional E-value: 3.3e-05
     DUF1664  44 esvskqleqvs...eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegl 113
                 ++v++ ++qv    +++aa+  + s+ i++v + + ++ e++++ ++ v+e+++  ++++e+ e+++++v+++
  EHT98139.1 438 DNVGHAIQQVAdlvNEIAAATAEQSKGIEQVHQAIGQMDEVTQQNASLVEEASSASKSLQEQAETLSRLVSTF 510
                 45555555554333899*****************************************************986 PP

>> DUF4455  Domain of unknown function (DUF4455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.77   1.2e+03     278     296 ..      75      93 ..      46     182 .. 0.53
   2 ?    0.6   0.2      0.12   1.7e+02      30     384 ..     279     334 ..     249     364 .. 0.49
   3 ?   10.9   0.7   8.6e-05      0.13       8      98 ..     387     476 ..     380     511 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.77
     DUF4455 278 ecleeveklkkeLldlkvc 296
                 + +e+ +k+   ++++k +
  EHT98139.1  75 KQAEAEQKINTIINNIKSL 93 
                 3333333333333333332 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
     DUF4455  30 ileageellkklsesdeeieklfkkleddedlekltiqelqelwdkVaeeslkrkswIkeldetLeklEkeRaeklkevlkkyveiLekiayllppdve 128
                 i++                                                                                                
  EHT98139.1 279 IAAGN---------------------------------------------------------------------------------------------- 283
                 33333.............................................................................................. PP

     DUF4455 129 rlidkeameiNqalleNrraiaklfanLmeaelerekssrlrwqdrledWkklkkerlvqefkefiaseeiqnppevkklleellkeqkklqekrlell 227
                                                                                                                    
  EHT98139.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

     DUF4455 228 qkisdllPpaltkskveeWyaslealneqidelhaqflekLreeyeevwqecleeveklkkeLldlkvcseeeaeklvneellplvgklqrkaeeelek 326
                                                                                                                    
  EHT98139.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

     DUF4455 327 ldksleelaketeaqsesLfkffqeaaqlwevheaklekqeeelekkleqlrqkhdee 384
                      e+l+ +te+q  sL +   ++a l ++ ++++e   ++   +l++ ++k +++
  EHT98139.1 284 -----EDLSSRTEQQAASLEETSVSMATLSDTVRQNAEGAVQA--SNLANNANKLSRQ 334
                 .....44444444444444444444444444444443322111..2222222222222 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 8.6e-05
     DUF4455   8 HeealasleeelasiseeveplileageellkklsesdeeieklfkkleddedlekltiqelqelwdkVaeeslkrkswIkeldetLeklE 98 
                 H +  a    e+  ++++  ++  e++e++++ +s+ ++ +++ +++  +++d +   iq++ +l +++a+  +++++ I+++ +++ ++ 
  EHT98139.1 387 HGRGFAVVASEVRNLAQRSSSAAREIKELITTSVSQVEQGLTQATSVG-SNSDNVGHAIQQVADLVNEIAAATAEQSKGIEQVHQAIGQMD 476
                 555556667788999999999999*******************99987.888889**************************9999886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1709  (0.0953204); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.46
# Mc/sec: 3599.91
//
Query:       EHT98140.1  [L=40]
Description: hypothetical protein CKS_3157 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00071   20.2   0.0    0.00071   20.2   0.0    1.0  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.11   13.0   0.0    1.0  1  AIG2_2    AIG2-like family


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.9e-08   0.00071      69     105 ..       2      33 ..       1      40 [] 0.87

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.9e-08
                 HHHCT.TTTTSEEEEEEEEEC.TTS-EEEEEEEEETT CS
       GGACT  69 LDelEpeepseYereevkvevledgeqveawvYvyag 105
                 LDe+E    + Y+r +++v++ e+g++v+a+vY  ++
  EHT98140.1   2 LDEFE----DGYDRLRTEVTL-ENGDTVTAYVYQLQP 33 
                 9****....99****999999.***********9965 PP

>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.2e-05      0.11      26      53 ..       7      34 ..       1      40 [] 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
      AIG2_2 26 giyrpievrVstatgeevlaraYvlsnq 53
                  y +++ +V+ ++g++v+a +Y+l++q
  EHT98140.1  7 DGYDRLRTEVTLENGDTVTAYVYQLQPQ 34
                379********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 304.70
//
Query:       EHT98141.1  [L=301]
Description: drug/metabolite transporter (DMT) superfamily permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-28   98.3  44.1    1.9e-16   60.5  17.1    2.1  2  EamA             EamA-like transporter family
    0.00047   19.5  20.1    0.00047   19.5  20.1    2.1  2  SLAC1            Voltage-dependent anion channel


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1  19.0   2.4e-15   2.2e-11       5     136 ..       4     134 ..       1     135 [. 0.96
   2 !   60.5  17.1   2.1e-20   1.9e-16       3     136 ..     150     285 ..     148     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.4e-15
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 +l  +++++w+++++++      v+    +f+rf ia++++l+++ l ++ + +l ++d l+ l+ g+  +++ f++f++a  +++ +  s+i+s++++
  EHT98141.1   4 ILYAIVVVIWGTTWIAIFLQQGPVDVTVSVFWRFAIASVIMLFLLTLLGRLR-RLAWQDHLFCLIQGCCVFCFNFWCFYTAAAYINTGLESVIFSMAVL 101
                 666788899********9999999999************************9.********************************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 + ++ s++++g+++  + +++++l+l G ++++
  EHT98141.1 102 YNAVNSYIFFGQRPLPRFWFAAALGLTGMVVLF 134
                 ******************************987 PP

  == domain 2  score: 60.5 bits;  conditional E-value: 2.1e-20
        EamA   3 gillallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslits 99 
                 g+ l  l+++ ++++ ++s ++  r ++++t++++ ++ +++++ +ia +++ ++ ++++ + + +ll+l+++g+v+af+++f+++k+tsa++a++ t+
  EHT98141.1 150 GMGLSALGTFGFSLGNMISlRHQRRHLETMTTNAWAMFYGALVMGLIAIIRGASFsPQWTFTYLGALLYLAVFGSVIAFWAYFTLIKRTSAGKAAYTTL 248
                 56666778888888888888999********************************99999999************************************ PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvllil 136
                 + P+++l +s l+ g + ++ +++g++lil G l+++
  EHT98141.1 249 MFPLVALSFSTLFEGYTWQSHSVAGLLLILSGNLVMF 285
                 ********************************88875 PP

>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3  13.3     0.018   1.6e+02     184     283 ..       7      99 ..       2     111 .. 0.72
   2 !   19.5  20.1   5.3e-08   0.00047       5     179 ..     119     280 ..     116     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.018
       SLAC1 184 lvlfvlyl..yr.lithklppaelrptlfiplGplgqgalallllgkaapkaaevlkvlalllalflwglglfwllvavlsvlslpvrlkfslswWaft 279
                 ++++v+    +  ++++   p ++++++f+ ++++++++l ll l   ++++a+  ++++l+ +  ++++ ++++  a++ +         + +  +++
  EHT98141.1   7 AIVVVIWGttWIaIFLQ-QGPVDVTVSVFWRFAIASVIMLFLLTLLGRLRRLAWQDHLFCLIQGCCVFCFNFWCFYTAAAYI---------NTGLESVI 95 
                 44444443223314444.6799***************************9999999**************999997744433.........34444444 PP

       SLAC1 280 FPlg 283
                 F ++
  EHT98141.1  96 FSMA 99 
                 4444 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 5.3e-08
       SLAC1   5 awFaivMGtgilalllka.lparglriislilfllalvlfllllvlyll.rfilypeavrkelrhpveslflgtfpmglltilnglllvlpgewlatla 101
                  wFa+ +G+ ++ +l+ + l  +  ++ s +l+ ++l ++ ++ + +     +++ ++  ++++ ++ ++f+g+++mgl+ i+ g+++  +++w  t +
  EHT98141.1 119 FWFAAALGLTGMVVLFWHdL--HISDWNSNALMGMGLSALGTFGFSLGNmISLRHQRRHLETMTTNAWAMFYGALVMGLIAIIRGASF--SPQWTFTYL 213
                 7*******888776552322..344456888888888888766443333033467777777778899****************99999..447888888 PP

       SLAC1 102 lvllWigvllslltavvvvfllftekeekleeitpawllpvvgllvvallgallaesqnpslqllgilvvslllwglG 179
                  +ll++ v+ s++  ++ +f l+++     +++  ++++p v+l  + l  +      ++s+      v++lll++ G
  EHT98141.1 214 GALLYLAVFGSVIA-FWAYFTLIKRTSA-GKAAYTTLMFPLVALSFSTLFEGYT----WQSH-----SVAGLLLILSG 280
                 88788888888888.6677777776554.78999**********9999999888....3332.....34444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2274.52
//
Query:       EHT98142.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98142.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98142.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98142.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98142.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98142.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT98142.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98142.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98142.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT98142.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98142.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98142.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHT98142.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98142.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98142.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98142.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT98142.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98142.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2678.60
//
Query:       EHT98143.1  [L=294]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-23   83.1   0.9    2.5e-23   82.2   0.9    1.5  1  HTH_18    Helix-turn-helix domain
    5.8e-19   67.7   0.2    3.6e-10   39.7   0.1    2.4  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.9   2.7e-27   2.5e-23       1      79 [.     209     286 ..     209     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 2.7e-27
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 la ++ +s+ ++ r+f++ lg+ p++y+ ++R+e Ar++++ +t+ls++eiAl+ GF++ls+Fs+ f++++g tPs+ r
  EHT98143.1 209 LASQASLSEYHFARMFRQSLGVAPHQYVMKRRMENARQMIV-STSLSLTEIALENGFNSLSHFSNRFKQVTGSTPSQLR 286
                 799************************************98.5**********************************98 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   8.6e-10   7.7e-06       3      41 ..     198     236 ..     196     237 .. 0.91
   2 !   39.7   0.1     4e-14   3.6e-10       6      41 ..     250     286 ..     248     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 8.6e-10
                 CCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   3 enlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                  +l+ +lt++ +A+++ +S+++F r F++ +G+ P+qy 
  EHT98143.1 198 AHLALPLTLNVLASQASLSEYHFARMFRQSLGVAPHQYV 236
                 5667789*******************************6 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 4e-14
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 st+l++++iA e gf S s+Fs +Fk++tG tPsq r
  EHT98143.1 250 STSLSLTEIALENGFnSLSHFSNRFKQVTGSTPSQLR 286
                 79*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2299.91
//
Query:       EHT98144.1  [L=91]
Description: hypothetical protein CKS_3152 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 739.20
//
Query:       EHT98145.1  [L=345]
Description: alpha/beta hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-23   83.5   0.4    2.7e-23   83.0   0.4    1.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    9.2e-19   67.8   2.1    4.9e-13   49.1   0.0    3.0  3  Peptidase_S9   Prolyl oligopeptidase family
    6.8e-09   35.1   0.1    2.9e-08   33.0   0.1    1.8  1  COesterase     Carboxylesterase family
    2.2e-05   23.9   0.5    0.00044   19.6   0.0    2.4  2  Hydrolase_4    Serine aminopeptidase, S33
    3.3e-05   23.9   0.1       0.21   11.5   0.0    2.3  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
    7.5e-05   22.4   1.4      0.052   13.1   0.2    3.1  2  DLH            Dienelactone hydrolase family
    7.9e-05   22.3   0.2       0.41   10.1   0.0    2.4  2  Esterase_phd   Esterase PHB depolymerase
    0.00085   18.7   0.1      0.089   12.1   0.0    2.3  2  LIP            Secretory lipase
     0.0053   16.4   0.0      0.025   14.3   0.0    2.0  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.015   14.9   0.1       0.12   11.9   0.0    2.0  2  Abhydrolase_1  alpha/beta hydrolase fold
       0.18   10.4   0.2        1.6    7.3   0.0    2.1  2  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.4   1.6e-26   2.7e-23       1     208 [.      84     306 ..      84     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 1.6e-26
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    +vyf GGGf++ + +   ++   la e+g vv + +Yr  P+  fPa+v d+ aa+r+l+++a+++g+dp ri ++GdSaGG la  + +   ++ 
     EHT98145.1  84 IVYFPGGGFTSADHEKFIQMRMALA-EAGFVVAAAEYRVVPD-TFPAPVVDGKAAVRYLRQHAETYGIDPHRIGVLGDSAGGWLAQMLGMTNGQTA 177
                    79********988888777766666.59*************8.5********************************************98877774 PP

                    ---...........EEEEEEESE-SST....SSTTSHHHHHCHHT..TTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEET CS
  Abhydrolase_3  97 epk...........vagqvliyPvtdl....ertesesikkaeel..adgplltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvae 175
                                  +++ + iy   dl    e +++e+++ +++   +++ l++  a++ f+ + + ++  +   asp+ +   +  pp l++ ++
     EHT98145.1 178 F-DqgdftetlsdvLQAAATIYGISDLrnigEGFSEENQQVHASPavTEALLIHGPAFHDFAGASVMDDPDKARQASPMGH-LANPKPPFLIMHGD 271
                    2.2367789**************8888555533333333333333235555556667777776666433333457887744.45558********* PP

                    T-TTH..HHHHHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 176 fDplr..degeayaerlraagvevelieyegmvHg 208
                    +D l   ++++++ ++l++ag +ve+++++g+ Hg
     EHT98145.1 272 KDSLVspHQSAQLFDALKKAGDKVEYVVVKGAEHG 306
                    **9983358899**********************7 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.23   3.7e+02       9      23 ..     106     120 ..      99     122 .. 0.82
   2 !   16.1   0.1   3.6e-06    0.0059      47     107 ..     132     196 ..     128     233 .. 0.67
   3 !   49.1   0.0     3e-16   4.9e-13     123     210 ..     244     328 ..     233     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.23
                   HHHCCT-EEEEE--T CS
  Peptidase_S9   9 lladrGyvvvvanir 23 
                    la++G+vv++a++r
    EHT98145.1 106 ALAEAGFVVAAAEYR 120
                   467*********998 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.6e-06
                   HHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEEESE---CCCHHCS CS
  Peptidase_S9  47 Dfiaaaealakeg...yvdserlaitGgSyGGyltgaaln.qrpdlFkaavaevpvvdvlrydsd 107
                   D  aa+++l ++     +d+ r+++ G S+GG+l+ ++ + + +  F+ +      +dvl+   +
    EHT98145.1 132 DGKAAVRYLRQHAetyGIDPHRIGVLGDSAGGWLAQMLGMtNGQTAFDQGDFTETLSDVLQAAAT 196
                   556788888554433379****************9998554777778877777777777766666 PP

  == domain 3  score: 49.1 bits;  conditional E-value: 3e-16
                   TCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHCT CS
  Peptidase_S9 123 eneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkealg 210
                   +++++ +++sp+ +l+n   +pp+L++hG++D+ v p ++++l++aL+k+g++v++++ +++ H + +  ++ + ++ +++++ e+l 
    EHT98145.1 244 DDPDKARQASPMGHLAN--PKPPFLIMHGDKDSLVSPHQSAQLFDALKKAGDKVEYVVVKGAEH-GDEVWYQPDVIRLVVNWFSEVLH 328
                   57788899*********..*********************************************.55578888**********99885 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   1.8e-11   2.9e-08      88     205 ..      68     172 ..      66     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.8e-11
                 -EEEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG.S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEE CS
  COesterase  88 LyLnvytPkekkeakkklPVlVwihGggfqtgsase.ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpe 185
                 L ++  +P+++     k P +V++ Gggf++ + ++ ++ ++ +ae + +v + +YR+ +  F +           ++D  +A+r+++++ +++G dp 
  EHT98145.1  68 LHMSLLVPRTD---AVK-PAIVYFPGGGFTSADHEKfIQMRMALAEAGFVVAAAEYRVVPDTFPAP----------VVDGKAAVRYLRQHAETYGIDPH 152
                 56677777433...445.9*****************54444434444************9988776..........89********************* PP

                 EEEEEEETHHHHHHHHHHHS CS
  COesterase 186 rvtlfGesAGaasvslllls 205
                 r+ ++G+sAG+ ++++l ++
  EHT98145.1 153 RIGVLGDSAGGWLAQMLGMT 172
                 **************999776 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.063     1e+02      53      96 ..     124     172 ..      79     180 .. 0.76
   2 !   19.6   0.0   2.7e-07   0.00044     192     232 ..     263     305 ..     246     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.063
  Hydrolase_4  53 psfddyvdDlaafvekvkeehpel.....plfllGhSmGGliallyllr 96 
                  + f   v D +a+v+ ++++ ++      ++ +lG S GG +a+ ++ +
   EHT98145.1 124 DTFPAPVVDGKAAVRYLRQHAETYgidphRIGVLGDSAGGWLAQMLGMT 172
                  5566667777777777776666556777778899999999999877654 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.7e-07
  Hydrolase_4 192 lPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyH 232
                   P+l++hG++D +v+p +s++l+++l+++  ++++ + +g+ H
   EHT98145.1 263 PPFLIMHGDKDSLVSPHQSAQLFDALKKAgdKVEYVVVKGAEH 305
                  69*************************9987788999999998 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00032      0.52       9      42 ..     136     172 ..     134     178 .. 0.82
   2 !   11.5   0.0   0.00013      0.21     110     172 ..     257     316 ..     205     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00032
                 HHHHHHCSTTB...--SSEEEEEETHHHHHHHHHHHH CS
      BAAT_C   9 ainyllrhpkv...kkdkigllGiSkGgelalllasf 42 
                 a++yl++h ++      +ig+lG S Gg la +l+++
  EHT98145.1 136 AVRYLRQHAETygiDPHRIGVLGDSAGGWLAQMLGMT 172
                 899*****9872225689*************999876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
                 -GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---STT----- CS
      BAAT_C 110 pvekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepPyfplce 172
                  + + k p+l++ g +D ++  ++sa ++ + Lkkag kve+ ++  ++a H  e+ y+p + 
  EHT98145.1 257 HLANPKPPFLIMHGDKDSLVSPHQSA-QLFDALKKAGDKVEYVVV--KGAEHGDEVWYQPDVI 316
                 44555889***********9999999.8999********999999..8999988888888765 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2    0.0029       4.7      81     148 ..     133     198 ..      71     241 .. 0.77
   2 !   13.1   0.2   3.2e-05     0.052     134     188 ..     252     306 ..     215     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0029
         DLH  81 dlkaavaylksvpev...stkkvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapil 148
                   kaav+yl++  e+   +++++gv G   GG+la  l   +     ++   G  + ++l+++ +++a+i+
  EHT98145.1 133 G-KAAVRYLRQHAETygiDPHRIGVLGDSAGGWLAQMLGMTNG---QTAFDQG-DFTETLSDVLQAAATIY 198
                 2.588888877766422279**************988877762...2333333.66666666666666666 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.2e-05
         DLH 134 ekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHa 188
                  +++ + a+ k p l+++g++D  +   +  +l  alk+a+ ++e +v +ga H+
  EHT98145.1 252 ASPMGHLANPKPPFLIMHGDKDSLVSPHQSAQLFDALKKAGDKVEYVVVKGAEHG 306
                 566677788899******************************************8 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00025      0.41      82     117 ..     137     172 ..     128     205 .. 0.88
   2 !   10.1   0.0   0.00025      0.41     157     199 ..     249     292 ..     210     309 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00025
  Esterase_phd  82 valvdalvdehrvdaarvyvaGlsaGaaladllalh 117
                   v   +  ++ +++d+ r+ v G saG+ la++l+++
    EHT98145.1 137 VRYLRQHAETYGIDPHRIGVLGDSAGGWLAQMLGMT 172
                   45567778999**********************986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
  Esterase_phd 157 avdalveag.aypglpalvvqGdadtvvavknaeslvvalrrls 199
                   a +a   +  a p  p l+++Gd d  v+++++ +l  al++  
    EHT98145.1 249 ARQASPMGHlANPKPPFLIMHGDKDSLVSPHQSAQLFDALKKAG 292
                   444444332267899*********************99998765 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.012        19      21      83 ..     106     164 ..      94     198 .. 0.85
   2 !   12.1   0.0   5.5e-05     0.089     212     263 ..     259     309 ..     247     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
         LIP  21 plLkeGyyVvvpDyeGpkstftvgrqsgkavLdsiraalksekvtgiksdakvalwGYSgGsl 83 
                 +l + G+ V  ++y     tf+ + ++gka    +r  ++  +  gi    +++++G S G+ 
  EHT98145.1 106 ALAEAGFVVAAAEYRVVPDTFPAPVVDGKAA---VRYLRQHAETYGID-PHRIGVLGDSAGGW 164
                 56678************************95...66666666777865.5799****999984 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5.5e-05
         LIP 212 avPqiPvlvyhgvidelipikdakklaknwcdkgiaslefaedlssgHlaet 263
                 a P++P l++hg  d+l+  +++ +l +   ++g  ++e++ ++ ++H  e 
  EHT98145.1 259 ANPKPPFLIMHGDKDSLVSPHQSAQLFDALKKAG-DKVEYVVVKGAEHGDEV 309
                 56*************************9999888.7********99996554 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-05     0.025      89     190 ..     136     291 ..     119     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
        FSH1  89 sldavkdyikengp...fdGiiGFSqGaalaallaslleellkea......................................shpslkfailvsGfkl 146
                 ++++++++ ++ g      G++G S G+ la++l ++  ++  ++                                        p +  a+l+ G ++
  EHT98145.1 136 AVRYLRQHAETYGIdphRIGVLGDSAGGWLAQMLGMTNGQTAFDQgdftetlsdvlqaaatiygisdlrnigegfseenqqvhASPAVTEALLIHGPAF 234
                 566666666665544446699999999999999866555544444578888888888888888888888888888888888877777778888888888 PP

        FSH1 147 eepk.............yeeyy.eedkiqtptLhvlGelDtvvdeerseaLaeafkns 190
                 ++                 + + +  + + p+L ++G++D++v++++s +L +a k+ 
  EHT98145.1 235 HDFAgasvmddpdkarqA-SPMgHLANPKPPFLIMHGDKDSLVSPHQSAQLFDALKKA 291
                 666666666665554321.22233333389************************9987 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.2   3.2e+02       1      89 [.      82     168 ..      82     177 .. 0.73
   2 ?   11.9   0.0   7.6e-05      0.12     202     250 ..     242     305 ..     185     307 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.2
                    SEEEEE-STTT...CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSS.EE.EEEETHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpg...ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddk.lt.lvGhSmGGmiala 89 
                    p++v+++G++     ++++++  +  aLa++gf v +   r v+ + pap    +d       ++l++  + +g+d+  + ++G S GG +a +
     EHT98145.1  82 PAIVYFPGGGFtsaDHEKFIQ--MRMALAEAGFVVAAAEYRVVPDTFPAPV---VDGKA--AVRYLRQHAETYGIDPhRIgVLGDSAGGWLAQM 168
                    677888888774445555888..8889999999999999999999999998...66666..677777666666655323348888888877765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.6e-05
                    HHHHC...........THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS....EEEEEEETCSS CS
  Abhydrolase_1 202 lrlre...........lknvlaptlvisgtsDplvppkaledlaqllpk....krlvvisdagH 250
                     +++            l n + p l+++g++D lv+p+++ +l ++l+k    +++vv+ +a+H
     EHT98145.1 242 VMDDPdkarqaspmghLANPKPPFLIMHGDKDSLVSPHQSAQLFDALKKagdkVEYVVVKGAEH 305
                    4444455666777777777788***************555555555454488999999999999 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.095   1.5e+02      67     115 ..      66     117 ..      28     122 .. 0.68
   2 ?    7.3   0.0   0.00099       1.6     163     189 ..     141     167 ..     131     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.095
                 EEEEEEEEEES.SSSSEEEEEEEE-TT--....GGGHHHHHHHHHTT-EEEEE CS
        AXE1  67 arikaklvlPkekeeklPavvefhGYegs....rgeihdllnyaaaGyavvvm 115
                  +++  l++P+ ++   Pa+v f G   +    ++ i+  +  a aG++v++ 
  EHT98145.1  66 RPLHMSLLVPR-TDAVKPAIVYFPGGGFTsadhEKFIQMRMALAEAGFVVAAA 117
                 467888999*9.89999******875544002223344445566667766665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00099
                 HHHHTSTTEEEEEEEEEEETHHHHHHH CS
        AXE1 163 eivaslpevDeeRvavlGasqGGalal 189
                 +  a+   +D++R++vlG+s GG la 
  EHT98145.1 141 RQHAETYGIDPHRIGVLGDSAGGWLAQ 167
                 444555679**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 2808.70
//
Query:       EHT98146.1  [L=490]
Description: putative mannonate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-90  301.7   0.0    4.8e-90  301.4   0.0    1.1  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    5.8e-48  162.9   0.0    1.2e-47  161.9   0.0    1.5  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.4   0.0   5.3e-94   4.8e-90       1     244 [.     213     458 ..     213     460 .. 0.98

  Alignments for each domain:
  == domain 1  score: 301.4 bits;  conditional E-value: 5.3e-94
  Mannitol_dh_C   1 esvgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGy 96 
                    ++v+fp+tmVDRIvpa+ +++l ++++ ++v+Dp+av++EpF+qWviednfv+grp++e++g+elv+dv pyee+Klr+LNg+H++laylg laGy
     EHT98146.1 213 QQVTFPSTMVDRIVPAMNPQSLDAIAALIQVADPVAVACEPFRQWVIEDNFVAGRPAWEKAGAELVKDVLPYEEMKLRMLNGSHSFLAYLGNLAGY 308
                    68********************************************************************************************** PP

  Mannitol_dh_C  97 qtiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalwi 192
                    ++i ++m+d+++r ++++l+  e+ap+l   +++dl +Yad++i+R++Np+++++++++a+dGsqklp+r l s+ +++k+g++++ll lg+a+w+
     EHT98146.1 309 EHIYDCMQDPHFRLAARRLMLTEQAPTLTV-KNVDLIDYADRLIARYENPALQHRTWQIAMDGSQKLPQRWLHSVCWHLKRGSRFDLLGLGIAAWM 403
                    *****************************9.***************************************************************** PP

  Mannitol_dh_C 193 rylegvaeggnyiekeDpqleelqe...aallakervkavlaekeileedlaqnk 244
                    ry++g +++g+ ie+ Dp l+ ++     +++++ rvka+l  ++i+++ l++n+
     EHT98146.1 404 RYVSGKDDQGKEIEVCDPLLASIRTavdGSIEGEARVKALLGLEAIFGHTLPDNP 458
                    ***********************99787899******************999997 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   1.3e-51   1.2e-47       2     151 .]      23     185 ..      22     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 1.3e-51
                  EEEEES-SHHHHHTHH.HHHHHHTT--TT-EEEEEE-STTHH.HHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-.HHHHHHHHTSTT--EE CS
  Mannitol_dh   2 rivhfGaGnfhRahqa.yiddLlaeegldwgivevnlrevda.reaLkaqdelyvviekgeeskearlvgsvnavlsveed.lealieamaePeiriv 96 
                  rivh+G+G+fhRahqa y d L ae+++dwg+vevnl+ +++ +++Lk q  ly v+e+++ ++e r++g v+++l+++ d +ea+++a+++Pei+iv
   EHT98146.1  23 RIVHLGFGAFHRAHQAvYADVLAAEHNSDWGYVEVNLIGGEQqIADLKRQGLLYSVAEMSAHGWEGRVIGVVKQALHAQVDgTEAVLHALCQPEIAIV 120
                  8*****************************************9************************************999**************** PP

                  EE---TTT..BE.TTTEB-TTSHHHHHHHH-TT.......HHHHHHHHHHHTT----EEEE-SS- CS
  Mannitol_dh  97 sltvtekG..id.atgeletdlpaiaadlakpe.......llvealkrrraaglkpltiisCdnv 151
                  slt+tekG  ++ atgel+ d+p+i adla+p+       ++veal+rr+aagl+++t++sCdn+
   EHT98146.1 121 SLTITEKGycHSpATGELMRDHPQIVADLAQPHqplsapgIIVEALARRKAAGLPAFTVLSCDNI 185
                  **********9*****************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3586.86
//
Query:       EHT98147.1  [L=328]
Description: 4-hydroxythreonine-4-phosphate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-102  343.0   0.3   1.5e-102  342.8   0.3    1.0  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.082   12.0   0.0    2.0  2  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.8   0.3  1.7e-106  1.5e-102       7     282 .]      35     322 ..      30     322 .. 0.93

  Alignments for each domain:
  == domain 1  score: 342.8 bits;  conditional E-value: 1.7e-106
                 EE.E-HHHHHHHHHHH......EEEEEBTTSTCE...TEEEEEE.S.......BTTB--HHHHHHHHHHHHHHHHHHHTTSSSEEEE----HHHHHHTT CS
        PdxA   7 vv.gdkkllekaakkl....elkleeieeaeeas...eelkvldve......veagkvsaesGaaalaslekAvelakegevdalvtaPinKeaikaag 91 
                 vv g  +++++ + ++    +++l+ i++ +ea+   + ++++d +      ++ g v++e+G++a++++++A+e+a++g+v+a+ taP+nKea+++ag
  EHT98147.1  35 VViGCVQTFRRIL-AMnitpQAELNVINNVSEATfmpGVIHIIDEKvahpeaLQCGVVQPEAGDVAYRCIKRATEMAMRGDVKAIATAPLNKEALHMAG 132
                 4437777777766.334678889999988888887786777766643333345********************************************** PP

                 ---SSHHHHHHHHTTSSGSEEEEEETTEEEEESS-SS-GGGHHHH--HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHHHH CS
        PdxA  92 lkfpGhtellaeltgtkkvvmmlaseeLrvalvTthipLkevakaitkerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiiepa 190
                 +++pGhtella+lt+tk++ m+l +++L+v++v+thi+L+   +++++ r+++v+r++++ l+r +g+++priaVaG NPhaGenGl+G+EE+++++pa
  EHT98147.1 133 HHYPGHTELLAKLTDTKDYSMVLYTDKLKVIHVSTHISLRTFLDTLSQARVETVIRIADTFLRR-VGYSQPRIAVAGVNPHAGENGLFGDEEIRVLTPA 230
                 ****************************************************************.********************************** PP

                 HHHHHHCTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHHTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHHHH CS
        PdxA 191 iekaraegievegplpaDtlFtkaalkkydavvamYHDqgliplKllafdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAiklA 282
                 i++++a+gi+v+gp+p+Dt+F++ +++ yd+vvamYHDqg+iplKll+f +gvn+t+GLp++rtS DhGtaf+ia++gka+++S+  +i++A
  EHT98147.1 231 IDAMKAQGINVYGPCPPDTVFMQCNEGMYDIVVAMYHDQGHIPLKLLGFYDGVNITAGLPFLRTSADHGTAFNIAWTGKANPESMAISIDMA 322
                 **************************************************************************************999987 PP

>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.036   3.2e+02      89     162 ..      54     128 ..      11     196 .. 0.73
   2 ?   12.0   0.0   9.2e-06     0.082     257     302 ..     278     324 ..     275     327 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.036
                 HHHTTEEEEEEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCG.GCSSEEEEETTG.GGGEEEEEEEEEHHHH CS
      Iso_dh  89 rkeldlfanlrpvkvfeklkvksplkrevveevdlvivReltggi.Yfgeekekkgsifteevavdtklyseeei 162
                   el+++ n+  +++++ +      k   +e +   +v    g++ Y+ ++++ +  + ++ +a+ t+++++e+ 
  EHT98147.1  54 QAELNVINNVSEATFMPGVIHIIDEKVAHPEALQCGVVQPEAGDVaYRCIKRATEMAMRGDVKAIATAPLNKEAL 128
                 467888888888888866666555555566777777777777774488888888887777888888888887764 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9.2e-06
                 CC-EEEEEET.SS-EEEEESS---CCCTTSS-S-THHHHHHHHHHHH CS
      Iso_dh 257 GllpSaslge.kkvaifEavHGsapdiagkdkaNpiavilSaalmLr 302
                 G+  ++++ +   +    a HG+a +ia  +kaNp ++ +S+ + L+
  EHT98147.1 278 GFYDGVNITAgLPFLRTSADHGTAFNIAWTGKANPESMAISIDMALQ 324
                 66666666663334456688************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2401.44
//
Query:       EHT98148.1  [L=381]
Description: alcohol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-94  314.7   0.9    7.6e-94  314.5   0.9    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    6.6e-15   55.5   1.2    7.8e-11   42.1   0.0    2.2  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.5   0.9   8.5e-98   7.6e-94       2     364 .]       6     370 ..       5     370 .. 0.97

  Alignments for each domain:
  == domain 1  score: 314.5 bits;  conditional E-value: 8.5e-98
                 SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHH CS
      Fe-ADH   2 trivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKai 100
                 ++i+ g++a++ l   +++ +  + l++tdk+++ ++++  ++ + l++ g  v+++d+v+ +pt ++ve+++++   + +d+v+++GGGsv+D+AK++
  EHT98148.1   6 STILSGSDAIKALTPVVADKQ--HLLVLTDKNIV-NLPATTQIMTLLSQDGRHVKLIDDVPAEPTHTDVEAVLSRTAGKTFDLVVGIGGGSVLDVAKLL 101
                 57999************9995..*********99.**************************************************************** PP

                 HHHTT.....................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 101 alllanpe..vedyl.gegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEay 196
                 ++l++  +  ++++l g   +k++++lp   iP+taGtGse+tp+a++  +e+++k +i +p +lPd++ + pelt ++P++++ +tg+Dal+h lE y
  EHT98148.1 102 SVLCHVASpsLKALLdG---VKITARLPSLLIPSTAGTGSEATPNAILAIPEKNTKSGIISPVMLPDYVALIPELTTSMPAHIASSTGIDALCHLLECY 197
                 *****653467777732...457888************************************************************************* PP

                 HHHT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHH CS
      Fe-ADH 197 vskkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfnaeaaperlaq 295
                 +++ +np+ d +al ++  +++nle++v ++++l+a  +ml+as+++g a+++ag+++vHal+++lg+ +++phg+anaill+  +++ ++ a +++a 
  EHT98148.1 198 TATISNPVGDNVALMGLHKLFRNLETSVTEPHNLNAKLEMLWASYYGGAAIAHAGTHLVHALSYPLGGTYHLPHGVANAILLAPCMKVVRPFAIDKFAT 296
                 *************************************************************************************************** PP

                 HHHT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-T.SGGGGSSS---HHHH CS
      Fe-ADH 296 laralgge....sdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkd.rslannpreltaedv 364
                 + + + g     + ee+ ++l++ l +l+k+l+lp++L+ lgv++ d+d+l+e+al+  r ++n p +++++dv
  EHT98148.1 297 VWDLIPGAditlTPEEKSHALVDYLAKLVKRLNLPDNLETLGVPSGDIDALSESALNVkRLMNNSPCAVNHQDV 370
                 *****999**************************************************************9986 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   8.7e-15   7.8e-11       5      99 ..      13     106 ..      10     112 .. 0.89
   2 !   12.1   0.3   1.3e-05      0.11     143     246 ..     171     272 ..     117     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 8.7e-15
    Fe-ADH_2   5 galeklgellkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsakln 99 
                 +a++ l  +++++  +++l+++d+n+ ++ a++++   l+++g +v+++++v +e+++++ve+++++ + k +dlvv++GgG+++D+ak++s   +
  EHT98148.1  13 DAIKALTPVVADK--QHLLVLTDKNIVNLpATTQIMTLLSQDGRHVKLIDDVPAEPTHTDVEAVLSRTAGKTFDLVVGIGGGSVLDVAKLLSVLCH 106
                 5666666666654..689*******988879***********************************************************998765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.3e-05
    Fe-ADH_2 143 ldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaeklvedkketealeellealalsgigisrpaSGsEHliSHaldmlalk 241
                  ++ +  P+++  s   D+l  +   ++  ++n v + +a++  ++++ ++e+ v ++++ +a  e+l a+  +g++i++++    H +S  l  ++  
  EHT98148.1 171 PELTTSMPAHIASSTGIDALCHLLECYTATISNPVGDNVALMGLHKLFRNLETSVTEPHNLNAKLEMLWASYYGGAAIAHAGTHLVHALSYPLGGTY-- 267
                 5666777888888877899***********************************************************************9999888.. PP

    Fe-ADH_2 242 qalHG 246
                 +  HG
  EHT98148.1 268 HLPHG 272
                 88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2686.09
//
Query:       EHT98149.1  [L=293]
Description: dihydrodipicolinate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-63  212.7   0.0    5.3e-63  212.4   0.0    1.0  1  DHDPS        Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
       0.18   11.6   0.0       0.56   10.0   0.0    1.8  2  Exonuc_VIII  Enterobacterial exodeoxyribonuclease VIII


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.4   0.0   5.9e-67   5.3e-63       2     268 ..       4     271 ..       3     289 .. 0.93

  Alignments for each domain:
  == domain 1  score: 212.4 bits;  conditional E-value: 5.9e-67
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgv 100
                 ++g++ta+vtpf ++g l    l++ +  ++n+g +g++ +Gt GE+++l+ +ek  + e+ v+++ gr +v+a++G  st++ ++l+k+ e+ G+d+v
  EHT98149.1   4 IEGVLTAIVTPFTQEGDLYLDELKRQVTRQLNAG-NGIFCGGTNGEFFVLNEKEKLTVTETCVNEVSGRAKVVAHIGEISTRDTLRLGKQIEKLGVDAV 101
                 689******************************9.8*************************************************************** PP

                 EEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCS..TTSEEEES-GGGHHHHHHT CS
       DHDPS 101 lavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevg..kdlviysGddelllsalsl 197
                 +++tPY+++ +q++l++h+ ai+   + pv lYn+p+rtg  ++pet  +La+ +ni+gvK+ +g+ e + +    v+  +++ +++G d l+ + +  
  EHT98149.1 102 SVITPYFVPLNQRELINHYTAIADGLSVPVFLYNIPARTGNTIEPETARTLAAHPNIIGVKDSAGSYESLRDYLDAVKecDNFDVLNGPDSLIHQGFVE 200
                 ***********************9999**************************************99776666655542279***************** PP

                 T-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCC.SCCHHHHHHHHCTTSSSBB.-- CS
       DHDPS 198 GadGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfae.pnvilvktalellGlvveatlr 268
                 G    is  +n+a+++++++    ++Gd++  ++ +e++  l  +l +    ++ vk al++lG +v++  r
  EHT98149.1 201 GCSACISGLANVAPHQINAIWSRFHAGDIDGSRQAQEQVTGLRTDLYKVaFSPAAVKKALQILGHNVGE-SR 271
                 ******************************************9888877589**************998.55 PP

>> Exonuc_VIII  Enterobacterial exodeoxyribonuclease VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.61   5.5e+03      44      61 ..     169     188 ..     166     191 .. 0.76
   2 ?   10.0   0.0   6.3e-05      0.56     150     180 ..     257     287 ..     225     292 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.61
  Exonuc_VIII  44 kklkdyfkav..atnfpvvn 61 
                  + l+dy+ av    nf v+n
   EHT98149.1 169 ESLRDYLDAVkeCDNFDVLN 188
                  56899999994446999988 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.3e-05
  Exonuc_VIII 150 elrirvlaqyiGeekylthvdalqkkeilrl 180
                  +   ++l   +Ge +y  h da+qk ei r+
   EHT98149.1 257 KKALQILGHNVGESRYAIHFDAAQKEEIRRI 287
                  3445688999******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2255.30
//
Query:       EHT98150.1  [L=473]
Description: Na+/solute symporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-25   89.7  34.3    4.3e-25   88.4  34.3    1.6  1  SSF              Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4  34.3   2.4e-29   4.3e-25       2     364 ..      39     377 ..      38     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.4e-29
         SSF   2 flagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitlk 100
                 + ++r +  f +g+ l++++i+a+s +G a a++  G+a ++  +ga +++ l +++l++r  n+g++T+   ++++++++    ++s + + ++  l 
  EHT98150.1  39 MEGSRAMPAFIVGILLMSEYIGAKSTIGTAQAAFEGGIAASWSVIGAAIGFPLFGMILVKRIYNTGKITISGAIAEKYGNST-KNIISLIMIYAL-LLV 135
                 5689*****************************************************************************9.777776655544.444 PP

         SSF 101 lsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltpdslkllr 199
                    + v+ga+ i ++l + + +a ++ a++ + Y ++GGl  + ++ ++ + l  +g l +l ++l++ Ggl+ +++++ +         t d+     
  EHT98150.1 136 NVGNYVSGAAAIATVLHVTLPVAAFITAVVSTFYFAFGGLKGIAWVTMLHSALKYFGILAILWFALSQTGGLKPMINEMPAYYW------TWDGN---- 224
                 557899**********************************************************************99876655......54442.... PP

         SSF 200 dpltalslwlglvlGvagl....philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnlla 294
                     ++s  +++++G++g     + +++   a+++ +++  + ++  i ++ +++ +      ai+++g+  k+  +++  s +a+p   +  ++++la
  EHT98150.1 225 ---IGASTIVAWLIGTIGSifctQFVIQ---AISSTRSVKSAQRSTWIAFLFCMPIA-----LAIAVIGVAAKYLHPNI-DSLYALPVFLQD-MNPWLA 310
                 ...3445557888888888433444444...44455555566666666788899884.....46788888777776666.467888887776.899*** PP

         SSF 295 GlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqk 364
                 Gl+    +A+i  +++++ l+ +s+++kD+Y   ++  +++e   +   r+++l ++ l ++ ++  ++ 
  EHT98150.1 311 GLVTTSLVASIFVSVSTVALAIASLVVKDFYVPYFKPTTEQE--FK-TTRWLSLLIGFLPLIFVLFVPEV 377
                 ************************************994444..43.44555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3075.92
//
Query:       EHT98151.1  [L=385]
Description: hypothetical protein CKS_3144 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-65  221.3   1.4    1.7e-65  221.1   1.4    1.0  1  BNR_2           BNR repeat-like domain
    7.6e-06   25.2  14.6       0.24   11.5   0.7    4.9  4  BNR             BNR/Asp-box repeat
    8.2e-05   22.1   0.0        1.2    8.5   0.0    3.2  3  BNR_4           BNR repeat-containing family member
    0.00011   21.1   0.0      0.004   16.0   0.0    2.5  2  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
  ------ inclusion threshold ------
      0.031   13.5   0.5        0.6    9.3   0.1    2.5  2  PSII_BNR        Photosynthesis system II assembly factor YCF4
      0.056   13.5   2.3         15    5.6   0.1    3.3  3  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain


Domain annotation for each model (and alignments):
>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.1   1.4   5.7e-69   1.7e-65       1     278 []      43     364 ..      43     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: 221.1 bits;  conditional E-value: 5.7e-69
                 XTEEEEEESSSSGGGEEEEEEEEEETTEEE.EEEEEE-TTS-...BTTEEEEEEEEEEETTTEEEEEEEEEETT--HHT----EEEESSTTSS----EH CS
       BNR_2   1 gtLlaawfggsregapdvaiwvsvsdkgsneWsapqvvadreqsrearkklgNPvlfqdpsgtliLfykvgvsvggwagskitrvtSkDdGktWsaprr 99 
                 g+Ll++wfgg++eg +d+++w s++ +gs+ Ws++++++d++      ++++NPvlf +p++ l+L  + + s +++ + + ++++S D GktW     
  EHT98151.1  43 GSLLCVWFGGTQEGIADISVWCSRLPAGSHIWSEAVKLSDDP-----TRSEQNPVLFLAPDNVLWLLWTAQLSGNQDTAIV-RYRQSGDLGKTWGPIDT 135
                 78****************************************.....*********************9999999997777.55*************** PP

                 HHGGEEEEEE-SS--..EE--T--EEEE...EE.......SS--EEEEEEEESSTTSS-EE----SSSEEEEEEEE.EEETTEEEEEEEE....EEEEE CS
       BNR_2 100 lpkspflnisgpvknkpiqladGrlilP...sshe.....lagkwrallelsddggktWkkgrvveqisgeiqpsilvekdgslvalaRs.rkaailes 189
                 l ++      ++++++ ++l++G+++lP   ++++     + +++ +++++s+d+g++W+ + v+e++ g+++++i+  +dgslval+Rs ++++i+ s
  EHT98151.1 136 LLDK----PGTFIRQPITVLENGNWLLPvfyCRTQpgekwVGNDDISAVKISSDQGQSWRDVVVPESL-GCVHMNITALQDGSLVALYRSrWADNIYLS 229
                 **99....66777777788*********9886666888988888*********************888.*********************9999***** PP

                 EESSTTSS-EEE-EEEEE----.......---SEEEEEEEE--..................................SSEEEEEEESTT-GGG----EE CS
       BNR_2 190 eSedgGetWskveltslpnpnsgidavtlkdgrlllvyNhesa..................................pRkpLtvalskdngkswkevlt 254
                 +S+dgGe+Ws++e+t lpn+ns+i+++tl++g+l+lv N  sa                                  pR+p+tva+s d+gk+w     
  EHT98151.1 230 RSTDGGESWSAPEATVLPNNNSSIQVTTLQSGELALVFNSMSAagaterraslydeiddgdgrkepeatgrsafwgaPRAPMTVAISADGGKTWPWQKN 328
                 ***************************************66666888999************************************************* PP

                 EEEEE...............EEEEEEEEEEESXXXX CS
       BNR_2 255 Lekgp............kseysYPsliqaedgklhi 278
                 L++g+            ++e+sYPs+ q+++g+lhi
  EHT98151.1 329 LDEGDgycmtnnsqeklNREFSYPSIKQDAQGTLHI 364
                 ***********************************8 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.15   4.5e+02       5      10 ..     125     130 ..     123     130 .. 0.90
   2 !    9.3   0.3   0.00044       1.3       2      11 ..     182     191 ..     181     192 .. 0.90
   3 !   11.5   0.7     8e-05      0.24       2      11 ..     230     239 ..     229     240 .. 0.89
   4 !    9.8   0.1   0.00031      0.93       2      10 ..     315     323 ..     314     323 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                 STTSS- CS
         BNR   5 DgGktW 10 
                 D GktW
  EHT98151.1 125 DLGKTW 130
                 89**** PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00044
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 +S D+G++W 
  EHT98151.1 182 ISSDQGQSWR 191
                 8********6 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 8e-05
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                  StDgG++Ws
  EHT98151.1 230 RSTDGGESWS 239
                 59*******9 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00031
                 EESSTTSS- CS
         BNR   2 yStDgGktW 10 
                 +S DgGktW
  EHT98151.1 315 ISADGGKTW 323
                 8******** PP

>> BNR_4  BNR repeat-containing family member
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00039       1.2      97     138 ..      91     132 ..      59     156 .. 0.89
   2 ?    3.1   0.0     0.017        49      45     129 ..     206     286 ..     171     305 .. 0.74
   3 !    7.0   0.0    0.0011       3.3      41      71 ..     350     380 ..     301     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00039
                 EEEEE-GGG-EEEEEEE-TTSS-EEEEEEEETTTTEEEEEES CS
       BNR_4  97 PrflstedgkLllsyRdgksgngnavlneYdektdkwktlge 138
                 P  + ++d+ L l +    sgn ++ +++Y+++ d  kt+g+
  EHT98151.1  91 PVLFLAPDNVLWLLWTAQLSGNQDTAIVRYRQSGDLGKTWGP 132
                 7888899*********************************98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.017
                 EEE-TTS-EEEEEESS.SSS--EEEBSSTT---.B-----SS..SSS-SSEEEEEEEE-GGG-EEEEEEE-T.TSS-EEEEEEEETT CS
       BNR_4  45 lgvdgdgrlhlafdhH.sdplvYrrstapldlsslgeveemlpggekessvTYPrflstedgkLllsyRdgk.sgngnavlneYdek 129
                 ++ ++dg l+  ++ + +d++  +rst +++     ++ ++lp+ +++ +v      + + g+L l++ +++ +g+++ +   Yde 
  EHT98151.1 206 ITALQDGSLVALYRSRwADNIYLSRSTDGGESW-SAPEATVLPNNNSSIQV-----TTLQSGELALVFNSMSaAGATERRASLYDEI 286
                 456799999999999988888888888855544.35666667665555544.....4777788888888776467777777777765 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0011
                 SEEEEEE-TTS-EEEEEESSSSS--EEEBSS CS
       BNR_4  41 nvislgvdgdgrlhlafdhHsdplvYrrsta 71 
                  ++s+  d +g+lh+a++   + ++Y r+t 
  EHT98151.1 350 SYPSIKQDAQGTLHIAYTYFRQAIKYARVTP 380
                 6899999999999999999999999999875 PP

>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.042   1.3e+02      60     113 ..      78     134 ..      70     143 .. 0.71
   2 !   16.0   0.0   1.3e-06     0.004       2     121 ..     179     304 ..     178     349 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.042
                     EE-SS-BS.....S--EEESSETTEEEEE.......BTT.S-EEEESSTTSSEEEEE CS
  Sortilin-Vps10  60 fklpfkpsl..saeplsfhakdkdwlialgekkeskdck.kkayystdggkswkklq 113
                     +kl+++p++  +++ l   +++  wl+++++ + ++d+   ++  s d gk+w  ++
      EHT98151.1  78 VKLSDDPTRseQNPVLFLAPDNVLWLLWTAQLSGNQDTAiVRYRQSGDLGKTWGPID 134
                     567777777756677777888999999997654444444255778999999998776 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.3e-06
                     EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEE.....S-EEEEESSTTSSEEEEE-SS-BS....S--EEESSETTEEEEE.... CS
  Sortilin-Vps10   2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltd.....skklyvttDrGktwkkfklpfkpsl.saeplsfhakdkdwlialgek. 89 
                      v iS+D+G++w +v   +++    ++ +   ++ + ++l +     +  l ++tD G++w+  ++   p++ s+ ++++ ++ +  l+++ ++ 
      EHT98151.1 179 AVKISSDQGQSWRDVVV-PESLGCVHMNITALQDGSLVALYRsrwadNIYLSRSTDGGESWSAPEATVLPNNnSSIQVTTLQSGELALVFNSMSa 272
                     5789***********85.5555555677777777777777666894444445689***************9755555555555566666665554 PP

                     ....BTTS-EEEESSTTSSEEEEESSEEEEEE CS
  Sortilin-Vps10  90 keskdckkkayystdggkswkklqesvkkcew 121
                        ++ ++ +y   d+g+  k+ ++  ++  w
      EHT98151.1 273 AGATERRASLYDEIDDGDGRKEPEATGRSAFW 304
                     33333444444444444444444444444444 PP

>> PSII_BNR  Photosynthesis system II assembly factor YCF48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0002       0.6      86     139 ..     182     240 ..     164     267 .. 0.72
   2 ?    1.4   0.0     0.053   1.6e+02      40      57 ..     313     331 ..     304     344 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0002
                 EESSTTSS-EE----TT-SS-EEEEEEEETT.EEEEEETT..--EE..EESSTTSSEEE CS
    PSII_BNR  86 httdgGksWerikLsekLPGePllitalgkk.kaelvtdv..gaiY..rtedagknWka 139
                  ++d+G+sW  + + e L    ++ital++   + l  +     iY  r++d+g++W+a
  EHT98151.1 182 ISSDQGQSWRDVVVPESLGCVHMNITALQDGsLVALYRSRwaDNIYlsRSTDGGESWSA 240
                 47789999999999999999999999998773455555543345774456788999987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.053
                 EEEESSTTSS-EE--.--- CS
    PSII_BNR  40 lletlDGGktWeers.ldl 57 
                 +  + DGGktW  ++ ld+
  EHT98151.1 313 VAISADGGKTWPWQKnLDE 331
                 4445566666653322444 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0064        19      40      60 ..     173     192 ..     166     198 .. 0.81
   2 ?   -0.2   0.0      0.31   9.1e+02      51      69 ..     231     249 ..     228     282 .. 0.74
   3 ?    5.6   0.1    0.0052        15      37      68 ..     302     333 ..     283     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0064
                  STT--EEEEEEESSTTSS-EE CS
  Mo-co_dimer  40 GgGrritrvevsldkGksWkl 60 
                  G+   i  v +s d+G+sW+ 
   EHT98151.1 173 GND-DISAVKISSDQGQSWRD 192
                  554.7999***********86 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.31
                  ESSTTSS-EE-EEESSSSS CS
  Mo-co_dimer  51 sldkGksWklaeieyeedk 69 
                  s d+G+sW+  e +   ++
   EHT98151.1 231 STDGGESWSAPEATVLPNN 249
                  789*****98877665444 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0052
                  EE-STT--EEEEEEESSTTSS-EE-EEESSSS CS
  Mo-co_dimer  37 aysGgGrritrvevsldkGksWklaeieyeed 68 
                  a+ G  r  + v +s d+Gk+W   +   e d
   EHT98151.1 302 AFWGAPRAPMTVAISADGGKTWPWQKNLDEGD 333
                  677788888899**********8766544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2831.37
//
Query:       EHT98152.1  [L=156]
Description: hypothetical protein CKS_3143 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-27   95.9   0.0    2.3e-27   95.7   0.0    1.0  1  DUF386    YhcH/YjgK/YiaL
  ------ inclusion threshold ------
      0.085   12.6   0.1       0.46   10.2   0.0    1.9  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> DUF386  YhcH/YjgK/YiaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   2.6e-31   2.3e-27       1     148 []       1     150 [.       1     150 [. 0.85

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 2.6e-31
                 -EEEETTSTTTT.--HHHHHHHHHH..HTS-GCC--SEEEE-.SSS-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS-.-- CS
      DUF386   1 MIidnlenlkry.lkpklkkaleyl..ketdlenlpeGkyeidgdklfvnvqeyetkpaeeakfEsHrkyiDiqivleGeErigyaelaekeelke.ey 95 
                 MIi+nl+ l    l++ l ++l+    + + l++ + G+++ ++  +f+ +q+++t++a+ +++E+H+ ++Diq++leGeE i ya +++  +    + 
  EHT98152.1   1 MIIGNLNALPLAgLPESLLALLRLPdcSLEALAARDIGRWQPENAAWFCTIQQATTQDATLRHTEYHHLWTDIQVMLEGEEVI-YAGAQSIAK--AgDE 96 
                 99999999998866665555554333333456888999*********************************************.554444443..3466 PP

                 BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEE.....B--B-EEEEEEEE CS
      DUF386  96 deekDiafyaegeeessvtlkpgdfaiffPedaHrp.eaekekekvkKvVvKvk 148
                 + + D+++ + ++   s+tl++gdfa+f+P+++H++ +a + + +v+K+V+Kv+
  EHT98152.1  97 ERKPDLYIAQPEPLPVSITLRKGDFAVFLPGEPHQAlCAAGAPVAVRKAVFKVP 150
                 889******99999**************************************96 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.095   8.5e+02      15      45 ..      66      95 ..      52      95 .. 0.64
   2 ?   10.2   0.0   5.1e-05      0.46      39      65 ..     114     140 ..     112     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.095
                CSSSEEEEEEEEESEEEEEECTEEEEEETTE CS
     Cupin_2 15 rHpgedeffyVleGegeltvdgeeveleaGd 45
                +H+  + + + leGe +++  g + + +aGd
  EHT98152.1 66 YHHLWTDIQVMLEGEEVIY-AGAQSIAKAGD 95
                4444447777888884444.34556666666 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.1e-05
                 EEEETTEEEEE-TT-EEEEEE-SSS-E CS
     Cupin_2  39 veleaGdsvyfpagtpHrfrNtgdepa 65 
                 ++l++Gd+++f +g+pH+  ++  +p+
  EHT98152.1 114 ITLRKGDFAVFLPGEPHQALCAAGAPV 140
                 689**************9877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1323.06
//
Query:       EHT98153.1  [L=226]
Description: short-chain dehydrogenase/reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-37  128.7   0.0    3.4e-37  128.3   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    4.3e-31  107.9   0.1    5.7e-31  107.5   0.1    1.1  1  adh_short       short chain dehydrogenase
    6.7e-11   42.1   0.1    6.7e-09   35.6   0.1    2.1  2  Epimerase       NAD dependent epimerase/dehydratase family
      2e-06   27.8   0.6    6.9e-06   26.1   0.6    1.7  1  KR              KR domain
      2e-05   24.6   0.1    2.2e-05   24.4   0.1    1.5  1  NAD_binding_10  NAD(P)H-binding
    0.00091   18.4   0.0     0.0014   17.8   0.0    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.015   14.7   0.1      0.092   12.1   0.0    2.1  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      0.045   13.6   0.0      0.076   12.8   0.0    1.3  1  DFP             DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   1.5e-40   3.4e-37       1     233 [.       8     222 ..       8     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 1.5e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   G  sgIG+ai + l ++G++v    + + +    ++l +    + +++D td +q++++++ ++    + D l+++ag+  +  +p+ e++ +  +r
    EHT98153.1   8 GYSSGIGKAITQDLLQKGWKVTGLSRTQGE----AALPN---LNGIAVDLTDADQLRSAISGLE----TPDALIHAAGMIVA--APLGELDGAASKR 91 
                   6679*****************999888887....22222...2349***********9998865....78************..************* PP

                   HHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelea 194
                     +  ++++  l+++++p +k+g++iv + s  + r+ +n + y+a+Kaal++++r++ +el+p++i+vN+v+pg+++T++ ++ +      + +  
    EHT98153.1  92 LWSLHVHAAEVLINHFAPTLKPGSRIVVIGSRTS-RGAANRSQYAATKAALVGMVRSWGMELAPRQITVNVVAPGATETPMLTKPE----RASSAPI 183
                   *******************************955.99999*****************************************98765....5666777 PP

                   HSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 195 raplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     p+grl++peeva+++ +L+s++a+ itGq+lv+ gG 
    EHT98153.1 184 LPPMGRLIQPEEVASLVSYLLSERAAPITGQELVICGGA 222
                   89************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.1   2.5e-34   5.7e-31       2     189 ..       3     174 ..       2     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 2.5e-34
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +++vtG ssGIG+ai + l+++G+kv+ ++r++ ++  ++ +l         i+vD+td+++++ +++      ++ d+L++ AG+   +p  el+ ++
  EHT98153.1   3 HAIVTGYSSGIGKAITQDLLQKGWKVTGLSRTQGEA--ALPNL-------NGIAVDLTDADQLRSAISGL----ETPDALIHAAGMIVAAPLGELDGAA 88 
                 79**************************99998866..55554.......579*********99988877....889********************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                  +r+ ++ ++++  l+ +++p+++   + rIv ++S ++  + a+ + Y+A+Kaa++g++rs+ +elap++i+vn+vaPG+++T+m ++
  EHT98153.1  89 SKRLWSLHVHAAEVLINHFAPTLK--PGSRIVVIGSRTS-RGAANRSQYAATKAALVGMVRSWGMELAPRQITVNVVAPGATETPMLTK 174
                 **********************77..999********99.899*******************************************876 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1     3e-12   6.7e-09       2      74 ..       5      76 ..       4      88 .. 0.90
   2 !    4.7   0.0     0.008        18     137     159 ..     129     151 ..     113     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3e-12
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH.T-SEEEE--S.- CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee.qpdavihlAa.v 74
                +VtG +  iG+a+++ ll+kg++v+gl+r    + +a+l++l+ + +dltd+++l+ +++    pda ih+A+ +
  EHT98153.1  5 IVTGYSSGIGKAITQDLLQKGWKVTGLSRT---QGEAALPNLNGIAVDLTDADQLRSAISGLeTPDALIHAAGmI 76
                8*****************************...44555666799****************999********9854 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.008
                 --SSHHHHHHHHHHHHHHHHHHH CS
   Epimerase 137 kpnspYaaaKlageklveayaaq 159
                 + +s Yaa+K+a   +v+++  +
  EHT98153.1 129 ANRSQYAATKAALVGMVRSWGME 151
                 689****************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.6   3.1e-09   6.9e-06       4     163 ..       5     148 ..       3     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.1e-09
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG   g+G+++++ l++kg + +  lsR+     + +a + +l+        +a+D++d+d+++++++ +++ +      ihaAg++  ++l e++ 
  EHT98153.1   5 IVTGYSSGIGKAITQDLLQKGWK-VTGLSRT-----QGEAALPNLN-------GIAVDLTDADQLRSAISGLETPD----ALIHAAGMIVAAPLGELDG 86 
                 78999999999999999999975.6778888.....3344566555.......5999***************9665....99***************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyr 163
                 ++ +++ +  v++a++L + +++  ++   +v++ S  +  g+a +++Yaa+ a l ++++++
  EHT98153.1  87 AASKRLWSLHVHAAEVLINHFAPtlKPGSRIVVIGSRTS-RGAANRSQYAATKAALVGMVRSW 148
                 *****************9999998899999******988.9***********99998888765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   9.9e-09   2.2e-05       5      68 ..      12      73 ..       8     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 9.9e-09
                    HHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-...SEEEES- CS
  NAD_binding_10  5 kvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkga...daVvsal 68
                    ++G+++++ ll++ g++vt l R++ ++a l   ++l+ + +d+td+++l++a++g    da + a+
      EHT98153.1 12 GIGKAITQDLLQK-GWKVTGLSRTQGEAA-L---PNLNGIAVDLTDADQLRSAISGLetpDALIHAA 73
                    79***********.5************99.6...79******************9873334666655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.3e-07    0.0014       3      59 ..       4      73 ..       1      80 [. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.3e-07
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT............T--TTSHHHHHHHHHHH.--SEEEE-- CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre............eldltdaeavaellkea.kpdvvvnaA 59
                    +vtG +  +G+++++ l ++g++v++l+r+            ++dltda++++++++    pd++++aA
     EHT98153.1  4 AIVTGYSSGIGKAITQDLLQKGWKVTGLSRTqgeaalpnlngiAVDLTDADQLRSAISGLeTPDALIHAA 73
                   689*************************9999*************************975269*****99 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.1e-05     0.092       2      85 ..       6      75 ..       5      79 .. 0.83
   2 ?   -0.3   0.0      0.25   5.6e+02     149     167 ..     130     148 ..     123     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.1e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH.T-SEEEE--S- CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev.qpdevynLAAq 85
                   +TG +  iG  +++ Ll+kg +v+g+ r + + ++ +++                + +DltD+++l+++++    pd+ ++ A++
     EHT98153.1  6 VTGYSSGIGKAITQDLLQKGWKVTGLSRTQGEAALPNLNG---------------IAVDLTDADQLRSAISGLeTPDALIHAAGM 75
                   8999999*******************99888877666654...............568999999999999987479999997765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.25
                    --SHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd 149 PrsPYaaaKlyadwivvny 167
                     rs Yaa+K++   +v+++
     EHT98153.1 130 NRSQYAATKAALVGMVRSW 148
                    699*******999998877 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.4e-05     0.076      23      91 ..       6      74 ..       4      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
                EEE----HHHHHHHHHHHHTT-EEEEEE-S-.SS---T.T-EEEE--SHHHHHHHHHHHHTT-SEEEE--- CS
         DFP 23 isNrSSGkmGyalAeaaaarGaeVtlvsgpv.sletpe.gvevvkvesaeemleaveealkeadivimaAA 91
                ++  SSG  G a+ + ++++G++Vt  s  + + + p+ +   v+ ++a+++++a+    ++ d++i+aA 
  EHT98153.1  6 VTGYSSG-IGKAITQDLLQKGWKVTGLSRTQgEAALPNlNGIAVDLTDADQLRSAISGL-ETPDALIHAAG 74
                5778999.6*****************99775355555422347999**********876.789****9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2010.13
//
Query:       EHT98154.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT98154.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT98154.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT98154.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3055.66
//
Query:       EHT98155.1  [L=133]
Description: hypothetical protein CKS_3140 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-06   26.2   0.0    6.7e-06   25.7   0.0    1.2  1  Cupin_2   Cupin domain
     0.0004   20.2   0.0    0.00069   19.5   0.0    1.4  1  Cupin_7   ChrR Cupin-like domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.5e-10   6.7e-06       4      57 ..      47     101 ..      44     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 7.5e-10
                 EEETTEEEEEECSSSEEEEEEEEESEEEEE.EC.TEEEEEETTEEEEE-TT-EEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegelt.vd.geeveleaGdsvyfpagtpHrf 57 
                 +lp ++  p+h+Hp      +Vl+G+++++  + ge+++ +aG+++    +  Hr 
  EHT98155.1  47 TLPAQTALPWHTHPMP-NAAFVLSGTLVVEdKEtGEQQTFQAGEALNETINSAHRG 101
                 67787899********.*************644799*********99999999986 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.7e-08   0.00069      29      82 ..      46     105 ..      32     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.7e-08
                 EEE-TTEE---EE-TT-EEEEEEEEEEEE......TTEEEETTEEEEE-TT-EE--EESS CS
     Cupin_7  29 vryapgsafsahkHpggeeilVLeGvfsd......eegdypaGsylrnppgsshapvsee 82 
                 + + +++a+++h+Hp     +VL+G++        e++ ++aG+ l +  +s h+ ++ e
  EHT98155.1  46 LTLPAQTALPWHTHPMPNAAFVLSGTLVVedketgEQQTFQAGEALNETINSAHRGFTLE 105
                 567899********************9751122224578999999999999999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1052.92
//
Query:       EHT98156.1  [L=235]
Description: hypothetical protein CKS_3137 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-24   84.4   0.4    1.5e-23   83.2   0.1    1.7  2  ANT         Phage antirepressor protein KilAC domain
    8.1e-12   45.5   0.0    1.7e-11   44.5   0.0    1.5  1  Phage_pRha  Phage regulatory protein Rha (Phage_pRha)
  ------ inclusion threshold ------
      0.097   12.7   0.1        0.2   11.7   0.1    1.6  1  HTH_Crp_2   Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ANT  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.5     3e+03      23      46 ..      16      39 ..       6      69 .. 0.65
   2 !   83.2   0.1   2.4e-27   1.5e-23       1     106 [.     124     223 ..     124     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.5
         ANT 23 sititeiAkllgigenrlfelLre 46
                +++ +eiA++ g ++ ++ +l ++
  EHT98156.1 16 TMSSREIAQMTGNTHGEVKRLIKS 39
                566688888888444444444333 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 2.4e-27
         ANT   1 eaqlaelaPkaeyaDrvlesdgsititeiAkllgigenrlfelLrekgilyrqkgsgqnlpyqdyidkglfevktqtvrhsdgsektktqtrvTqkGqe 99 
                 e+qlae aPka+++D +++ d+++ +++++k+l+++e+++ ++L +++i+yr+  +g ++p   + ++g+f+ +++t      +++t+ q+r+T kG +
  EHT98156.1 124 EKQLAESAPKAAFFDDFVNVDTALGFRQLCKMLKVKETDFRQFLLDRNIMYRE--KGALTPQHYHLQAGYFTLHAGT----AENQHTFSQARFTTKGVR 216
                 79**************************************************9..77********************....5789************** PP

         ANT 100 flaellk 106
                 ++a l++
  EHT98156.1 217 WIASLWA 223
                 ****997 PP

>> Phage_pRha  Phage regulatory protein Rha (Phage_pRha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   2.8e-15   1.7e-11       1      87 [.      17      95 ..      17      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 2.8e-15
  Phage_pRha  1 tsSleiAelfgkrHknVlrdIrkliedleefgkelnfeeseykdsngretkvylltrdgftllvmgftgkkavefkaayidrFnele 87
                +sS+eiA+++g++H +V+r I++l e ++++++ l    ++  + +g+ +++y+l+++++ l v+ ++    + f+a+  dr+++ e
  EHT98156.1 17 MSSREIAQMTGNTHGEVKRLIKSL-ETAQRLSQPL---LVNLYEHQGEMRQEYHLNKRDSLLAVARLS----PGFTAEALDRWQARE 95
                8**********************9.4445555332...5666678899********************....***********9977 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.3e-05       0.2      20      51 ..      15      46 ..       2      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSE CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkregli 51
                + ++ +e+A+m G t   v r+++ L+ ++ +
  EHT98156.1 15 ITMSSREIAQMTGNTHGEVKRLIKSLETAQRL 46
                789***********************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1821.62
//
Query:       EHT98157.1  [L=144]
Description: 6,7-dimethyl-8-ribityllumazine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-34  116.4   0.0    9.4e-34  116.3   0.0    1.0  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   5.2e-38   9.4e-34       2     135 ..       4     138 ..       3     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 5.2e-38
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCCCHHHHHHHHCTSTT-.SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHHC CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeagvaeenidvvtVPGafElplaakklaesskyldavialGvvirGetphfeyvaeavskglmrvsldt 97 
                    lr+a+++a++++ei+++ l+g+++e+++      +i++++VPGafE+pl a++la+++ ++da+++  +v++G+++++++va+av +glm+++l t
     EHT98157.1   4 LRVAFIKANWHSEIVSQTLAGFQQEMDNSSTP-CEIKTWDVPGAFEMPLLAQRLAQTG-KFDAIVCAALVVDGGIYRHDFVAQAVVNGLMQAQLAT 97 
                    79**************************9965.9**********************65.56*********************************** PP

                    TS-EEEEEEEESSHHCCHHCCT..STC.CCHHHHHHHHHHH CS
  DMRL_synthase  98 gvPvifgvltvdteeqalerag..gka.gnkGeeaaeaale 135
                    +vPv+   lt+++ + a e +   +++  +kG+eaa+a+ +
     EHT98157.1  98 NVPVFSVSLTPHNFQPADEFIRfyTEHfVKKGKEAARAVRQ 138
                    ******************9887434459*********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1115.47
//
Query:       EHT98158.1  [L=157]
Description: hypothetical protein CKS_3135 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-63  212.1   5.0    2.4e-63  211.9   5.0    1.0  1  DUF1348   Protein of unknown function (DUF1348)
    1.3e-05   25.8   0.4    2.6e-05   24.8   0.3    1.6  2  SnoaL_2   SnoaL-like domain
    0.00078   19.8   0.1      0.002   18.5   0.1    1.7  2  DUF4440   Domain of unknown function (DUF4440)
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.019   15.2   0.1    1.4  1  DUF2604   Protein of Unknown function (DUF2604)


Domain annotation for each model (and alignments):
>> DUF1348  Protein of unknown function (DUF1348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   5.0   5.3e-67   2.4e-63       1     130 []       9     139 ..       9     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.9 bits;  conditional E-value: 5.3e-67
     DUF1348   1 Ppft.aetaakkvraaedaWntrdpekvalaytedsvWrnrdeflkgreeiveflkkkwekeldyrlikelfaftdnriavrfayeykdesgqwfrsyG 98 
                 Ppft  ++a++kvr+aedaWn+rdpe+v+lay++dsvWrnrd fl+gr+eiv+fl++kw++e +yrlikel++f+ nriavrfaye++d+  +wfrsyG
  EHT98158.1   9 PPFTdVQQAITKVRLAEDAWNSRDPERVSLAYSPDSVWRNRDIFLSGRSEIVAFLREKWQREAEYRLIKELWSFHSNRIAVRFAYEWHDSVANWFRSYG 107
                 99984689******************************************************************************************* PP

     DUF1348  99 nenWefdeeGlmkkreasindvaikeeerkfk 130
                 nenWefde+G+m +r+asindvai+e++r+f+
  EHT98158.1 108 NENWEFDENGFMVRRHASINDVAIAESQRLFH 139
                 *****************************997 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.3   5.7e-09   2.6e-05       6      73 ..      26      93 ..      21     122 .. 0.76
   2 ?   -0.4   0.1       0.4   1.8e+03      37      49 ..      97     112 ..      80     146 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.7e-09
                HHHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE.EEETTEEEEEEEE CS
     SnoaL_2  6 aalnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdv.vadgdrvavewtv 73
                +a+n++d++++   ++pd vw++    l+Gr +i af+r+ +++  ++r  i+++   + +r+av++ +
  EHT98158.1 26 DAWNSRDPERVSLAYSPDSVWRNRDIFLSGRSEIVAFLREKWQREAEYRL-IKELwSFHSNRIAVRFAY 93
                7***********************777***************74444444.333347777777777544 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHH...H CS
     SnoaL_2  37 eairaffralfa...a 49 
                 + ++ +fr++ +   +
  EHT98158.1  97 DSVANWFRSYGNenwE 112
                 4445555555433222 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   4.6e-07     0.002       9      80 ..      25      96 ..      17     120 .. 0.88
   2 ?   -1.0   0.0       0.5   2.2e+03      67      85 ..     125     144 ..     100     150 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.6e-07
                HHHHHCT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEEEEEEE CS
     DUF4440  9 eeafvagdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtgrytfe 80
                e+a++++d+e++   ++pd v+ +++  + ++ e+++ l++++ +  +++l  e  ++  +  +v++ y ++
  EHT98158.1 25 EDAWNSRDPERVSLAYSPDSVWRNRDIFLSGRSEIVAFLREKWQREAEYRLIKELWSFHSNRIAVRFAYEWH 96
                79************************9888************999999999999999998888888877766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.5
                 E.TTEEEEEEEEEEEECCTT CS
     DUF4440  67 l.gdlAvvtgrytfegrgdg 85 
                 + +d+A++  +  f++++++
  EHT98158.1 125 SiNDVAIAESQRLFHWPQGR 144
                 34788888888888887665 PP

>> DUF2604  Protein of Unknown function (DUF2604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   4.3e-06     0.019      36      67 ..     108     138 ..      94     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.3e-06
     DUF2604  36 aenwelkdeaGtlldvdkkvedlGiaaivklf 67 
                  enwe+ de+G ++     ++d+ ia+ ++lf
  EHT98158.1 108 NENWEF-DENGFMVRRHASINDVAIAESQRLF 138
                 69***9.9***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1211.30
//
Query:       EHT98159.1  [L=138]
Description: hypothetical protein CKS_3134 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.058   13.3   0.1       0.11   12.3   0.0    1.4  1  BAT       GAF and HTH_10 associated domain
      0.072   13.1   0.0       0.09   12.8   0.0    1.4  1  DUF2846   Protein of unknown function (DUF2846)


Domain annotation for each model (and alignments):
>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.2e-05      0.11      22      55 ..      33      66 ..      22      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
         BAT 22 aeldcrveleglvprsdgevlvfftvdgadpeev 55
                ae + ++++ ++++r d+++  ++tvdg d+ e+
  EHT98159.1 33 AEGQTQIDVSHVITRADDGSHIYLTVDGKDAGEL 66
                5667789*********************998876 PP

>> DUF2846  Protein of unknown function (DUF2846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     1e-05      0.09      26      78 ..      56     127 ..      35     138 .] 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
     DUF2846  26 vfvngkkigelankeYfvaevepGeykister.efes..................ndleldveaGkvyylry 78 
                 + v+gk+ gel+n+e  v+ v++G++++     ++++                  +++  +v  +k  ++++
  EHT98159.1  56 LTVDGKDAGELPNGESKVLHVPAGKHEVGGYVrTLFGlgrvtidplevttspndvKKVAYTVTRNKATFVEQ 127
                 679************************742211233333455555555555555666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 968.62
//
Query:       EHT98160.1  [L=98]
Description: short-chain dehydrogenase/reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   76.9   0.0    2.4e-21   76.4   0.0    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.3e-07   30.5   0.0    2.9e-07   30.2   0.0    1.2  1  adh_short     short chain dehydrogenase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   2.7e-25   2.4e-21     149     233 ..       2      95 ..       1      96 [. 0.89

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.7e-25
                   HHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.......HHH...HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 149 ealtrylAvelgpkgiRvNavspgpikTlaasgikg.......fde...lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    +lt+++A++l+p gi+vN  +pg++kT+++++i++       +       +++++r+ lgrl +p++va++++fLa +++ yitGq + vDgG+
    EHT98160.1   2 RGLTQTAARDLAPAGITVNGFCPGIVKTPMWAEIDRqiseaagQ-PagyGTKAFAKRITLGRLSEPDDVAACVAFLAGPDSDYITGQSILVDGGM 95 
                   689***************************99998765444431.03447899*****************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   3.2e-11   2.9e-07     157     193 ..       2      38 ..       1      40 [. 0.93

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.2e-11
                 HHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 157 agltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 +glt+++a++lap gi+vn+ +PG+v+T+m +e+ ++
  EHT98160.1   2 RGLTQTAARDLAPAGITVNGFCPGIVKTPMWAEIDRQ 38 
                 79*****************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 792.69
//
Query:       EHT98161.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98161.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98161.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98161.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98161.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 815.66
//
Query:       EHT98162.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98162.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 869.77
//
Query:       EHT98163.1  [L=61]
Description: hypothetical protein CKS_3130 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 543.54
//
Query:       EHT98164.1  [L=592]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-40  139.0  11.7    1.4e-40  139.0  11.7    2.7  3  MCPsignal    Methyl-accepting chemotaxis protein (MCP) signal
    1.2e-20   74.4   0.5    1.2e-20   74.4   0.5    2.7  2  dCache_1     Cache domain
  ------ inclusion threshold ------
       0.12   12.5   4.0        1.5    9.1   1.0    2.6  2  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
       0.21   11.8  10.4        1.3    9.3   3.1    3.5  3  DUF948       Bacterial protein of unknown function (DUF948)
        6.4    6.3  12.0       0.15   11.7   4.8    1.8  2  Snf7         Snf7


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.8   6.4e+03      74      91 ..      25      42 ..      21      66 .. 0.51
   2 !    6.5   3.5    0.0019       6.7     100     170 ..     373     426 ..     343     442 .. 0.56
   3 !  139.0  11.7   3.8e-44   1.4e-40       3     140 ..     441     564 ..     439     573 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
                HHHHHHHHHHHHHHHHHH CS
   MCPsignal 74 AdEVrkLAersaqaakei 91
                A+E ++LAe+  q+  + 
  EHT98164.1 25 AKEQKNLAENYLQQIAQS 42
                344444444433333333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0019
                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                  + ++                 +v + ++a +++ e ++e+a+   ++a+ +e+q+a++ee++ ++e++++
  EHT98164.1 373 SQLQS-----------------IVGQIKDASASVREGASEIASGNLDLASRTEQQAAALEETAASMEQISA 426
                 33333.................3333333334444455555555555666666666666666666665543 PP

  == domain 3  score: 139.0 bits;  conditional E-value: 3.8e-44
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
   MCPsignal   3 laeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqke 101
                 l+ +a++ A++g++ v +vv++m +i++ssk+i di++ i++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsa a k+i+ali      
  EHT98164.1 441 LTGNATTIASRGENLVGQVVQTMSQIDDSSKKIGDITTMINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAVKDIAALI------ 533
                 5678999**************************************************************************************...... PP

                 ........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH CS
   MCPsignal 102 indsvesleetrqrveegselveetgealkeiveavaev 140
                         ee+  rv++g++lv+e+g++++e   +++ v
  EHT98164.1 534 --------EESSARVQSGVTLVNEAGKTMHESKRRIQTV 564
                 ........8888888888888888888888877776665 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.5   3.3e-24   1.2e-20       5     249 .]      30     287 ..      26     287 .. 0.84
   2 ?   -0.0   3.4      0.17   6.1e+02       9      36 ..     453     480 ..     370     572 .. 0.56

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 3.3e-24
    dCache_1   5 eqaeeqllglaeqlanniedvldslenlaetlasnpslqdlleepnraneasreslqallksilksnpdisgvylvd...................adG 84 
                 + ae++l+++a++ + +i+  l +++  a+ l+++  l  l    ++a +++r++++ +++  l++npd+ ++++++                   ++G
  EHT98164.1  30 NLAENYLQQIAQSRGLQIQQELSYARDMAHSLGQS--LIAL----PKAGVNDRKIADKIMEYSLRANPDYLSMSVIFepdafdgrdaefvgqkgqpPQG 122
                 5689****************************997..4443....4446778888888888899*************9***999999999999999899 PP

    dCache_1  85 qviassdpssppnleg.......tddpadrdwykealaggggkpvisdpyvdqt..ggkpvitiavpiyddsgkfiGvlaadldldnlqdllsni.klg 173
                 ++ ++ d+++ +n  +       +  p + d+y  + ++++ ++   +py++++   + + +++a+pi d +gk   v++ d++l +lq+ +++i +  
  EHT98164.1 123 RYAWFVDRDQSGN--YamhpllsYLTPGQGDYYLVPQQSRK-DT-LIEPYSYPYngVPTLLTSVASPIID-QGKLMAVVTSDISLASLQQKVNQIkPWQ 216
                 9887777776555..346**********************7.55.778886555346779*********8.8***********************6558 PP

    dCache_1 174 etgyvfivdsdGniiahpdkdllgknlrdelkaqealekalakiesgvssvklngeeylvayapip...tglgWylvvv 249
                 +tgy+++++++G+++++p k + gk+ +         +k+   ++   ++    ge+ +++++p+    ++++Wy+ +v
  EHT98164.1 217 DTGYALLLSNSGKVVSSPVKNDAGKEWKG--------DKDNFTRQIVEHDDPVLGERAMYTWYPVVtgnSDKPWYVGIV 287
                 89*****************9999866554........455555555555566778999999********88****9875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.17
    dCache_1   9 eqllglaeqlanniedvldslenlaetl 36 
                 e+l g++ q+ ++i+d  +++  +++++
  EHT98164.1 453 ENLVGQVVQTMSQIDDSSKKIGDITTMI 480
                 2333333334444444444433333333 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.0   0.00042       1.5      11      73 ..     379     441 ..     369     479 .. 0.88
   2 ?    3.6   0.1     0.021        76      31      85 ..     511     566 ..     506     571 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
  TMF_TATA_bd  11 vqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekel 73 
                  v  ++  s+++r+  +E+as + +l++ ++++ +a ee ++ m++  ++ +l+++++++ ++l
   EHT98164.1 379 VGQIKDASASVREGASEIASGNLDLASRTEQQAAALEETAASMEQISATVRLNADNAQQATHL 441
                  566778899************************************999999998888877655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.021
  TMF_TATA_bd  31 lkeelerleaerdeareeivklmke.neelkelkkeleelekeleelqeryetlLe 85 
                  + +e+ +l++    a ++i++l++e + ++++  + ++e  k + e ++r +t+L+
   EHT98164.1 511 VASEVRNLAQRSAGAVKDIAALIEEsSARVQSGVTLVNEAGKTMHESKRRIQTVLT 566
                  5678999999999999******97615678999999999*************9996 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.5    0.0026       9.2      35      85 ..     368     429 ..     363     432 .. 0.89
   2 ?    9.3   3.1   0.00037       1.3      28      87 ..     414     483 ..     411     485 .. 0.88
   3 ?    1.6   0.1      0.09   3.2e+02      56      85 ..     526     555 ..     503     566 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0026
      DUF948  35 ieelekqvdpilkevedllakvne...........lledvneklekvdplteavadlgesvs 85 
                 ++++++q+++i+ +++d+ a v+e           l++  +++ +++++  +++++++++v+
  EHT98164.1 368 LHTMQSQLQSIVGQIKDASASVREgaseiasgnldLASRTEQQAAALEETAASMEQISATVR 429
                 788999999999999999999999888888899999999999***************99984 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00037
      DUF948  28 ldeaaatieele..........kqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                 l+e+aa++e++           +q++ ++ +++++ +  ++l+ +v + + ++d   ++++d+++ ++++
  EHT98164.1 414 LEETAASMEQISatvrlnadnaQQATHLTGNATTIASRGENLVGQVVQTMSQIDDSSKKIGDITTMINSI 483
                 6777777777777777888888999****************************************99886 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.09
      DUF948  56 vnelledvneklekvdplteavadlgesvs 85 
                 v+++++ ++e +++v++ ++ v+++g++++
  EHT98164.1 526 VKDIAALIEESSARVQSGVTLVNEAGKTMH 555
                 333444455566666666666666666554 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.7      0.93   3.3e+03      26      63 ..      27      64 ..      23      71 .. 0.56
   2 ?   11.7   4.8   4.1e-05      0.15      47     129 ..     401     482 ..     367     488 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.93
                HHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7 26 kleaelkklakkgnkdralllLKqkkryekqldqldnq 63
                ++++ + ++ +++ + r l++  ++ +++ +  +l ++
  EHT98164.1 27 EQKNLAENYLQQIAQSRGLQIQQELSYARDMAHSLGQS 64
                33455556666666666666666666666665555555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHH CS
        Snf7  47 LKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkkvdidkidklmdeiedqmekaeeisEalsr 129
                 L    r+e+q + l+++ a++eq+s ++    +n + ++ + + a ++ +  +++   ++ ++m +i d+++k + i  ++++
  EHT98164.1 401 LDLASRTEQQAAALEETAASMEQISATVRLNADNAQQATHLTGNATTIASRGENLV-GQVVQTMSQIDDSSKKIGDITTMINS 482
                 5556799*****************************************99999987.89*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.22s 00:00:00.85 Elapsed: 00:00:00.37
# Mc/sec: 4761.38
//
Query:       EHT98165.1  [L=112]
Description: hypothetical protein CKS_3128 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-16   58.8   0.2    4.7e-16   58.3   0.2    1.3  1  Cupin_2          Cupin domain
    0.00056   19.8   0.4    0.00083   19.3   0.4    1.2  1  AraC_binding     AraC-like ligand binding domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.018   14.8   0.0    1.3  1  FdtA             WxcM-like, C-terminal
      0.021   15.0   0.0      0.032   14.4   0.0    1.3  1  CENP-C_C         Mif2/CENP-C like
      0.022   14.7   0.3      0.023   14.6   0.3    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
       0.11   12.1   0.1       0.26   10.9   0.1    1.6  1  Cupin_1          Cupin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.2   1.6e-19   4.7e-16       3      70 ..      32      99 ..      30     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.6e-19
                EEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2  3 velppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70
                +++pp + + +h+H ++ +ff+VleG++ l+vdg +++l++ + + +p+g  H+ rN +d  + +lv+
  EHT98165.1 32 EQMPPATHEIRHYHVRSRQFFFVLEGQLSLEVDGVVHHLQTQQGIEIPPGAKHQARNISDNSVTFLVI 99
                6899999999********************************************************98 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   2.8e-07   0.00083       7      74 ..      31      99 ..      27     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.8e-07
                  EETTSTT-SEEEETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE CS
  AraC_binding  7 ieagypdhsfpphvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwl 74
                  +e++ p+ +  +h h    ++  v+eG+ +l+++g  ++l++ + + +ppg  H+ +  s+++ ++ ++
    EHT98165.1 31 YEQMPPATHEIRHYHVrSRQFFFVLEGQLSLEVDGVVHHLQTQQGIEIPPGAKHQARNISDNSVTFLVI 99
                  6777787788899998899*****************************************998888776 PP

>> FdtA  WxcM-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     6e-06     0.018      46     112 ..      40     101 ..      26     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6e-06
                 EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE-STTEEEEE-TT-EEEEE---TT-EEEEEESS CS
        FdtA  46 rGeHahkkleqllialsGsvevllddgkkkkeilldspskglyipkmiWrelinfsedavllvlase 112
                   +H h + +q++ +l+G++++++d   ++      ++++g+ ip++  ++  n s ++v   + s+
  EHT98165.1  40 EIRHYHVRSRQFFFVLEGQLSLEVDGVVHH-----LQTQQGIEIPPGAKHQARNISDNSVTFLVISH 101
                 557*********************976554.....46789*******************98776665 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.1e-05     0.032      30      80 ..      46      95 ..      29     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                --SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EE CS
    CENP-C_C 30 skkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNklnkeak 80
                +++    F+V++G++  +v +  + + + +   +P g + + +N++++++ 
  EHT98165.1 46 VRS-RQFFFVLEGQLSLEVDGVVHHLQTQQGIEIPPGAKHQARNISDNSVT 95
                444.3469************************************9887654 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   7.7e-06     0.023      72     133 ..      35      97 ..       4     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.7e-06
  MannoseP_isomer  72 Pgeklslqkhhhrae.hWvvvkGtakvtvddevlllkenestyiplgaihrlenpGkipleli 133
                      P ++  ++++h r+   + v++G  +++vd  v  l+ ++ + ip ga h+  n    +++++
       EHT98165.1  35 PPATHEIRHYHVRSRqFFFVLEGQLSLEVDGVVHHLQTQQGIEIPPGAKHQARNISDNSVTFL 97 
                      556666666666876157899******************************999887776655 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   8.6e-05      0.26      49     112 ..      43      98 ..      20     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.6e-05
                 EEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEE CS
     Cupin_1  49 hyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivv 112
                 hyh ++ + ++vl+G++ ++  v g         l+  + + +P+g  h + n+  ++ v + v
  EHT98165.1  43 HYHVRSRQFFFVLEGQLSLE--VDG-----VVHHLQTQQGIEIPPGAKHQARNIS-DNSVTFLV 98 
                 9****************933..333.....2233555555788888888888886.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 891.18
//
Query:       EHT98166.1  [L=50]
Description: hypothetical protein CKS_3127 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 467.11
//
Query:       EHT98167.1  [L=104]
Description: conserved protein regulated by LexA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  111.5   4.5    1.8e-32  111.0   4.5    1.2  1  YebG      YebG protein
     0.0094   16.0   0.1      0.012   15.6   0.1    1.4  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin


Domain annotation for each model (and alignments):
>> YebG  YebG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   4.5     2e-36   1.8e-32       1      73 [.       1      73 [.       1      74 [. 0.99

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 2e-36
                XXXXXXXXXXXXXXX..XXXHHHHHHHHHHHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHTTHHHHHHHHH CS
        YebG  1 MaVeikYvveRdGeekmtftsKkeADayDkmLdladeLaelLeqselgldeeqaEelallLaenkeelakalk 73
                MaVe+k+vv+R+Geekmtf++KkeADayDkmLd+a++++++L +++ ++de+qaE+l+llLae+k++++++l+
  EHT98167.1  1 MAVETKFVVVRKGEEKMTFANKKEADAYDKMLDMAEAFTDWLLAHQADMDESQAETLGLLLAEQKDAVQHILR 73
                ************************************************************************8 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.4e-06     0.012      20      50 ..      35      65 ..      17      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHHHTSSSSHHHHHHHHHHHHHCT CS
         DEP 20 GseavdWLldnldiedreeAvalgqlLldqg 50
                +++ +dWLl +   +d ++A++lg lL +q+
  EHT98167.1 35 AEAFTDWLLAHQADMDESQAETLGLLLAEQK 65
                6789***********************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 987.41
//
Query:       EHT98168.1  [L=264]
Description: SIR2 family NAD-dependent protein deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-25   88.2   0.1    1.1e-24   87.2   0.1    1.5  2  SIR2_2    SIR2-like domain


Domain annotation for each model (and alignments):
>> SIR2_2  SIR2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.4   7.2e+03      87      98 ..      12      23 ..       5      43 .. 0.70
   2 !   87.2   0.1   5.9e-29   1.1e-24       2     143 .]     103     244 ..     102     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.4
      SIR2_2 87 skslLflGySfs 98
                +k +Lf+G ++s
  EHT98168.1 12 GKLILFAGAGLS 23
                567899998886 PP

  == domain 2  score: 87.2 bits;  conditional E-value: 5.9e-29
      SIR2_2   2 liiTTNYDdllekaleesgkpvsdaavskedlerelseaesgrtllyklhGslsrpesivltesdYeellarktpiptllkallrskslLflGySfsDp 100
                  i+TTNYD+ le a e +g p+s    ++++ ++ l ++++++ +++klhG++++  sivl es+Y e+l++++p+  +l++ ++++s+Lf+GyS+sD 
  EHT98168.1 103 RIYTTNYDRWLEAAHEAHGVPYS----KVANAAD-LVSLTEDKRHIIKLHGDFDDDTSIVLDESSYFERLYFDSPLDIKLTHDVMGNSVLFVGYSISDF 196
                 59*********************....3333333.4569**************999**********99999**************************** PP

      SIR2_2 101 nirelleellkesgn......arrhyaflpedekeeeekllekknievi 143
                 nir l+ +l k  g+      +++ y+f  ++     +++l +++ie i
  EHT98168.1 197 NIRLLFYRLTKMWGRtglataRPKSYLFTNRNN-PVAKEVLGQWGIEMI 244
                 ******888888887777776666799999999.999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2139.13
//
Query:       EHT98169.1  [L=186]
Description: HAM1 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-33  116.2   0.0    1.8e-33  116.0   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0     1e-37   1.8e-33       1     186 [.       3     177 ..       3     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 1e-37
                 EEEC-S-HHHHHHHHHHTTTECCCE.EECCCCEE----BS.SSHHHHHHHHHHHHHH.HTS-EEEEEEEEEEGGGTTTBGGGTTTTTH.TTCHHHHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilaeellevkslkelelpeveEtq.gtfeenalkKaraaae.aglpvladDsgLevdaLnglPGvysarfag.egaedeenla 96 
                 i f + N++Kl+ev+ il++ +++v+ +       +eE+q ++  + +++K  +a+  +g p++++++gL++d LnglP   +  f + +ga+   ++a
  EHT98169.1   3 IRFLSANEQKLAEVRGILEPVGVDVVPI----ARRIEEIQtENELDLVRDKLTKAFSiIGRPLFVEHTGLYLDGLNGLPAGLTRIFWNrLGAD---RFA 94 
                 6799**************9888888766....5677899977778899****9999856999*****************99998885436655...9** PP

                 HHHHHCTHTTS--EEEEEEEEEEEETTTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SSBTTTS.CHHHHHHSHHHHHHHHHHH CS
  Ham1p_like  97 klleeleeeeedrsArfvcvlaladpeeeeellfeGeveGeiveeprgeggfGyDpiFvpeegektfaelskeeknaiShRgkAleklle 186
                  l+++l+  +  ++ ++++vl+++d+  ++++ f Ge++G+i++ep g++gf +D+iF+pe+ ++tfae+  e+kn+iS R+ Al+++++
  EHT98169.1  95 SLVQGLD--S--QGVTAKAVLGYCDG--RKMYQFFGELRGTIAPEPAGPHGFQWDCIFIPEGYDQTFAEMG-EKKNEISNRRIALDRFAA 177
                 ******4..5..89**********96..6668999*************************75455*****9.89************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1630.23
//
Query:       EHT98170.1  [L=23]
Description: hypothetical protein CKS_3123 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 216.90
//
Query:       EHT98171.1  [L=131]
Description: DNA-binding protein H-NS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-19   71.0   3.0    1.1e-19   71.0   3.0    1.4  1  Histone_HNS  H-NS histone family
  ------ inclusion threshold ------
      0.012   13.2   0.7      0.014   13.0   0.7    1.0  1  SidE         Dot/Icm substrate protein
      0.046   12.8   0.1      0.047   12.8   0.1    1.1  1  PdxJ         Pyridoxal phosphate biosynthesis protein PdxJ


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   3.0   1.9e-23   1.1e-19       4      91 ..      34     124 ..      31     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.9e-23
                  XXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX----SSS-----EEEEE.....---T..TT-SSS.-EEEEES----HHHHHHH.... CS
  Histone_HNS   4 alieelekqeea..leaeerkealaeirelaaeyGltleelaaeakkakkkkakakkvpaK..YrdpetegetWsGrGrkPkwlkaalaagk 91 
                   +++e++++eea  +  +e++++la+++e++ ++G++++el +  +++k  kak++ +paK  Y+d+++e + W+G+Gr+P+ +k+al+ag+
   EHT98171.1  34 VVVAERREEEEAeqAMLREKADKLAKYKEMLMNDGIDISELVDLPTETKT-KAKRAPRPAKyrYTDENGETKSWTGQGRTPSPIKKALDAGG 124
                  556666666655457999***********************766555555.445556999977999************************97 PP

>> SidE  Dot/Icm substrate protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   2.3e-06     0.014    1372    1418 ..      27      77 ..       5      86 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-06
        SidE 1372 sllqgltdlvgl....ttderadlakkeeelarfkeelnndksdvkqlisk 1418
                   +l+ l   v+        e+a l++k+++la++ke l nd +d+++l++ 
  EHT98171.1   27 EMLEKLSVVVAErreeEEAEQAMLREKADKLAKYKEMLMNDGIDISELVDL 77  
                  344444444433000034456779************************986 PP

>> PdxJ  Pyridoxal phosphate biosynthesis protein PdxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.9e-06     0.047      72     143 ..      18      88 ..       3     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-06
                 SHHHHHHHHHH--SEEEEE--SCCCCSTTSSB-TGGCHCCHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHC CS
        PdxJ  72 teemleialelkpeqvtLVPekreelttegGldvakeeeklkevikelkeagirvslFidpdkeqieaaael 143
                 +e  l+++ e+  +  ++V e+ree  +e+ + ++++++kl+++ + l + gi +s ++d  +e+ ++a+++
  EHT98171.1  18 REIELDVLNEMLEKLSVVVAERREEEEAEQAM-LREKADKLAKYKEMLMNDGIDISELVDLPTETKTKAKRA 88 
                 455566777777788899***********997.6799***********************988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1606  (0.0895755); expected 358.6 (0.02)
Passed bias filter:                      869  (0.048469); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 1151.96
//
Query:       EHT98172.1  [L=366]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-11   41.8   0.0    3.9e-10   39.8   0.0    1.9  2  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
       0.11   12.2   0.0        4.2    7.0   0.0    2.3  2  Ribosomal_S7     Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.17   1.5e+03      58      83 ..      95     121 ..      78     142 .. 0.73
   2 !   39.8   0.0   4.4e-14   3.9e-10      17     165 ..     163     312 ..     145     318 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.17
                      EEEECSSSSE.EEEECTHHHHHHHHHH CS
  Phage_integrase  58 heregKgske.ravplseealellkel 83 
                       ++egK++ + r+ +l+++ l++ +++
       EHT98172.1  95 LISEGKKEEArRVFALTKQFLSWAEMQ 121
                      335666555536778888888887765 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 4.4e-14
                      C.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTSBSSBET..TSSB-- CS
  Phage_integrase  17 e.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeksellfask..rgkpls 107
                      + sl+ + + +l+l++ ++ R  E+++ r ++++l+ g ++   ++ K+++e+++p+s  + + ++ l++ +   ++ s +l +      +pls
       EHT98172.1 163 NwSLSEQVRWALRLCLVSARRPDEVVQARKSEFNLQSGLWKQ-GTRNKSQREHTLPISALMRRCIEALIAAS---DPASPWLVPAPrdVMQPLS 252
                      45667778899******************************8.8888*************************...9999999998855679*** PP

                      HHHHHHHHHHHHHH...CT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHH CS
  Phage_integrase 108 rqtvrkafkravee...agiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqi 165
                      + ++++a++r+ ++    g+e p+tp +lR+++ ++L+    + +v  k+++H+   + ++
       EHT98172.1 253 KGALNQALRRMLRAprgLGLE-PFTPRDLRRTARSKLAALDTPNDVARKIMNHALEGIDRV 312
                      ***********9997556666.*******************************86555555 PP

>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00047       4.2      20      44 ..      85     109 ..      70     219 .. 0.78
   2 ?    2.9   0.0    0.0085        77      37      70 ..     296     330 ..     286     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00047
                   SBHHHHHHHHHSBTTBHHHHHHHHH CS
  Ribosomal_S7  20 selveklinklmkdGkkslAekivy 44 
                      +++l n l+ +Gkk+ A++++ 
    EHT98172.1  85 RLRLNRLYNVLISEGKKEEARRVFA 109
                   56789*****************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0085
                   HHHHHHHHHHHHHHHHHH.SS-HHHHHHHHHHHCS CS
  Ribosomal_S7  37 slAekivygaldiieekt.kkdplevleeAlenvk 70 
                    +A+ki+++al+ i++    +d +  +++Ale  +
    EHT98172.1 296 DVARKIMNHALEGIDRVYdTHDYVVQMRTALERYS 330
                   68*************96415577777888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2797.15
//
Query:       EHT98173.1  [L=69]
Description: hypothetical protein CKS_3120 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 575.06
//
Query:       EHT98174.1  [L=37]
Description: hypothetical protein CKS_3119 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 324.65
//
Query:       EHT98175.1  [L=846]
Description: putative transmembrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-252  839.6   3.6   2.7e-252  839.4   3.6    1.0  1  DUF2309   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.17   12.3   0.7       0.38   11.2   0.7    1.5  1  HARE-HTH  HB1, ASXL, restriction endonuclease HTH domain


Domain annotation for each model (and alignments):
>> DUF2309  Uncharacterized protein conserved in bacteria (DUF2309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  839.4   3.6    3e-256  2.7e-252       2     752 .]      34     820 ..      33     820 .. 0.93

  Alignments for each domain:
  == domain 1  score: 839.4 bits;  conditional E-value: 3e-256
     DUF2309   2 eeaaevipplwPlktfvahNplhgledlpfeeavaelaklfgarlylseeeyrealaegrideedLeaa.......................eeel..e 75 
                 ++a+++i+p+wPl++++a+Np+++   +p+++++a++a l g+++++s+++   a++egri+ +dL+ a                       +  +   
  EHT98175.1  34 SQACQAIAPTWPLDRAIAVNPHWSRIGMPVRRVAARMAVLGGIQVFPSRDQQFLAWREGRISLADLNLAlhqlpeaqatgltaeqcldalqaR--TspV 130
                 689******************************************************************888887777777666666555332..1446 PP

     DUF2309  76 eeetlaelldaltged....ldelvdeqlikllaaflDegqaawslpkrekglyaawrelakhdlsle.llllkelrkvlaelpedpeeaiaealeelg 169
                 + + l ++ld+  +++    +++++++q+ +++aa++De qa+w+ ++  +glya+wr++  hd+++  l++l ++++++++lp+++++a ++++++lg
  EHT98175.1 131 QLPLLIDVLDNDPDRHqrlsWRQAITHQVGQTCAAYFDEDQANWQPQR--QGLYAFWRDTLGHDQGIGlLMGLPHITNAINALPDNATDAERWLIARLG 227
                 67777777777666668899************************9664..6*****************9999*************************** PP

     DUF2309 170 ipeeeweaylealllalpGWagliryreeqpeaelqgeepaslvdllairLlleaalleevakekl.......sleeleaa.....aalee.laeeerg 255
                 +pe+ w++yle++ll+++GWa++++ +++q  a l+g ++ +l++ll+irL++ ++lle ++++++       ++     a     ++le+ +++  ++
  EHT98175.1 228 LPEAVWADYLESVLLTVNGWASWCAFLSWQ--AGLAGGKDPHLRELLTIRLAWGVILLECKDDAATrhalaslQH-----AwkqahQVLEAaEQAMLVE 319
                 ******************************..999*************************776666664443322.....2555544444404555679 PP

     DUF2309 256 klwleAlErsyreellealaaeseseeaaerpeaqavfCiDvRseslRRhLEevgpeveTlGfAGFFGvpiayqgldkeeeealcPvlltPkhlvkeea 354
                 ++w+ AlE  y++el+++la+++ + +++++ eaqa+fCiDvRse+lRR+LE+v+  ++T+GfAGFFG+p+ay++l+++++++++P+ll+P+ +v ++ 
  EHT98175.1 320 EVWQLALEIGYQRELAHRLASANGHGTEHQAIEAQAAFCIDVRSEPLRRALETVSAGIQTIGFAGFFGLPVAYTPLGTQARRPQLPGLLAPSLEVADRI 418
                 9**************************99*******************************************************************998 PP

     DUF2309 355 keee........eaekakrkrrlkaalekllkelkrsllssfllvealGllyalkllaktlaprraarlkeklkakleekeetklkldkeseeegltle 445
                  e+          +++a+r+r+++ a+++++++++r++ ++f++vea+Gl y++kl++++   ++a++  + ++  ++ +e+++++l       gl++e
  EHT98175.1 419 VEAGsqykadaaLQSQASRSRHARFAMADQWNAISRWPGAAFSFVEAVGLGYSVKLVNWLRPGNKARARDDLAGLPARFRETCRPQLV------GLDTE 511
                 8877788888877888899999999********************************8877666666666666666677777777776......9**** PP

     DUF2309 446 eqvelveaaLraigLtenfAplVllvGHgSsseNNpheaaldCGACgGrsGgvnARvlAallNdpeVRegLaergieIPedTvFvaalhnTttDevelf 544
                  +v+l++++L+a+gL++++Ap+VllvGHgS+s+NN+h+aaldCGAC+G++G+vnAR lA+llN+p+VR+gL+++g  IP++T FvaalhnTttDe+e+f
  EHT98175.1 512 AKVKLAAGVLHAMGLEQHLAPIVLLVGHGSQSANNAHAAALDCGACCGQTGEVNARSLAQLLNEPQVRQGLQAQGTVIPDSTTFVAALHNTTTDEIEWF 610
                 *************************************************************************************************** PP

     DUF2309 545 dldllpashrealeklkadleeagelaaaeRarrlesaeakk.ekaeaeverraedwsevRPEwglagnaafiigrReltrgldLdgraFLhsYdwrqD 642
                 dldllp+s+r+++e+l+  +++a+++ ++eRa +l+  ++++ +    +++rra+d +++RPEwgl+gnaaf+i++R+++rg+ L+gr+FLh+Yd +qD
  EHT98175.1 611 DLDLLPQSARARCERLQPIFNQASDQVRRERAPALKLDPRAPeDVLLGQLRRRANDGAQTRPEWGLSGNAAFLIAPRHRSRGVVLGGRSFLHDYDASQD 709
                 ***********************************999999988899**************************************************** PP

     DUF2309 643 pdgklLeniltaplvVaqwInleYYfStvdnevyGsGsKvlhnvvg.riGVmeGnggDLrtGLplQsvhdgdreiHePlRLlvvieapreaierilarh 740
                  dg+lLe ++tap++V++wIn++Y++St+d++++GsG+Kvlhnvvg riGV+eGnggDLr+GL++Qs+hdg++++HePlRL+vvi+ap++ai++++ +h
  EHT98175.1 710 SDGSLLEGLMTAPMLVTHWINWQYHASTCDPQRLGSGNKVLHNVVGgRIGVFEGNGGDLRIGLSRQSLHDGEHWMHEPLRLTVVIDAPQNAIDAVIGKH 808
                 **********************************************9**************************************************** PP

     DUF2309 741 eavrelvdngWl 752
                 e +r+l+dngWl
  EHT98175.1 809 EVIRKLLDNGWL 820
                 ***********7 PP

>> HARE-HTH  HB1, ASXL, restriction endonuclease HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   4.2e-05      0.38       6      32 ..     304     330 ..     302     335 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHH-S-EEHHHHHHHHHHHTT CS
    HARE-HTH   6 aAkqVLeeegrpltvkeIwekiqekgl 32 
                  A+qVLe + + + v+e+w+ ++e g+
  EHT98175.1 304 QAHQVLEAAEQAMLVEEVWQLALEIGY 330
                 69*********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.39
# Mc/sec: 6572.24
//
Query:       EHT98176.1  [L=521]
Description: NADH dehydrogenase, subunit 5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-37  128.1  28.4    3.7e-37  128.1  28.4    3.0  3  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.0     0.031   5.6e+02     176     224 ..      44      89 ..       9     113 .. 0.70
   2 !  128.1  28.4   2.1e-41   3.7e-37       1     259 [.     122     378 ..     122     394 .. 0.90
   3 ?    0.0   0.2     0.022   3.9e+02      96     132 ..     391     426 ..     384     458 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.031
  Proton_antipo_M 176 AySsishlGymlialavatqygveaaiihllthalfkallFllagsviy 224
                        S+i+  G+ l a + + q+  +++ i  ++++l+ all+ + g vi 
       EHT98176.1  44 SLSTIALTGLCLAAGISGAQW--TGV-IMATSFGLVLALLVQVLGKVIA 89 
                      457777777777776664444..443.3456777777777777777765 PP

  == domain 2  score: 128.1 bits;  conditional E-value: 2.1e-41
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a+++lll  ++ +v+++l  L  ++ ++p +  A+ k  +  ++++++LL + +l ++  g+ ++ +l + + +   sl l + ++ll++++++
       EHT98176.1 122 ADNWLLLIAAWAAVGVALQHLLCFYPDRPFARLAAHKKHIADRMADVMLLGAAALAWWDVGSFSLSALGMHIAQHGMSLSLQASAVLLVMAVIF 215
                      799********************************************************************999999999999*********** PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGyml 187
                      ++a++p+h Wl ++ +eaPtpvsall A+ +v++g+++l+r+ ++l   +n++++llli a+++++l+++v l+ ++iK  lA+S+++++G+ml
       EHT98176.1 216 RTALLPVHGWLIQV-MEAPTPVSALLhAG-VVNLGGFVLMRFAPMLD-QANAARILLLIFALATAVLAGIVMLTRISIKVRLAWSTVAQMGFML 306
                      **************.***********777.9***************9.9********************************************* PP

  Proton_antipo_M 188 ialavatqygveaaiihllthalfkallFllagsviyere..ktrdirayggLak.kmPilalvllvlllslaGl 259
                      + +a+ + y  ++a +hl+ h+l ka  Fl a+  ++++     +  +  + L+  + P+l ++ ++l+l l+Gl
       EHT98176.1 307 LECAL-GLY--TLAALHLIGHSLYKAHAFLSASEGVRDTRlqALHRAALPSTLSVfFAPVLTITAVFLVLMLSGL 378
                      *****.777..9********************7776664333444445556777767787766555555555544 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.022
  Proton_antipo_M  96 saqvplhlWlpdayveaPtpvsallAatlvkagvlll 132
                      +a +pl lWlp+a ++++     ll + +  +g+  +
       EHT98176.1 391 MAWAPL-LWLPEASEGGSGKSAQLLFGCVTVIGLTTV 426
                      555665.8*****888887777676454444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4010.85
//
Query:       EHT98177.1  [L=300]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-21   73.9   0.6    1.9e-20   72.6   0.6    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein
      2e-20   73.1   4.8    3.2e-20   72.4   4.8    1.2  1  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.6   2.1e-24   1.9e-20       2      60 .]       9      67 ..       8      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 2.1e-24
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l +f  va+ g++trAAeeL +sq+avs qi++LE++lg+ L++R+gr+l LT+ G+
  EHT98177.1  9 HHLYYFWRVARLGHLTRAAEELATSQSAVSVQIRQLEDRLGESLLIRKGRRLMLTDTGQ 67
                799******************************************************97 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   4.8   3.6e-24   3.2e-20       7     201 ..      96     290 ..      91     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 3.6e-24
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplvlvaspdhpLargepvsl 98 
                     rLr+g + tl+r     +++  +   P + l l++g  e ll +l +++lD++++ +     +d+ l+++ L+++ + +v +++  +a +    +
      EHT98177.1  96 RLRVGSVATLSRNYQENWIRP-ALTDPAIVLTLESGLLEGLLVRLTQHKLDVVLANETVpadPDRPLRCVFLGSQSISVVGPASK-WASQSLRIP 188
                     899999999999998999955.5789*******************************99*************************8.***99999* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     edL + +  l  + ++lr ++++++ +ag++pr + ev+++++l+  ++    +++lp+ +v+del++g lv +  ++ +l+ ++++++ ++r++
      EHT98177.1 189 EDLDGVEIALPGPRHALRAQFDALCSKAGVTPRLRAEVDDMAMLRLIARDSGWLTVLPEVVVQDELRAGILVSVGQSD-ELQERFFAITTPHRHR 282
                     ************************************************************************666666.***9999999999998 PP

                     HHHHHHHH CS
  LysR_substrate 194 spavrafi 201
                        +++++
      EHT98177.1 283 IDVLEQLL 290
                     77776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2349.90
//
Query:       EHT98178.1  [L=80]
Description: hypothetical protein CKS_3115 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-23   80.9   0.4      6e-23   80.7   0.4    1.1  1  ParD_like  ParD-like antitoxin of type II bacterial toxin-ant


Domain annotation for each model (and alignments):
>> ParD_like  ParD-like antitoxin of type II bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.4   3.3e-27     6e-23       1      65 [.       1      65 [.       1      73 [. 0.91

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 3.3e-27
   ParD_like  1 mgivkiddeLhdsarresaaqsRSinaQiehWariGrlvesspslsyreieelllkaaeeeelat 65
                mgivki+d +h+++r +s+a+sRSin+Q+ehW+++G+l+e+ p+l+ +e++++l++ + ++    
  EHT98178.1  1 MGIVKISDVMHENLRIASQAMSRSINSQAEHWLKLGMLAELYPQLTQNELAQTLIRIEMNGGADI 65
                89****************************************************99887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 582.22
//
Query:       EHT98179.1  [L=261]
Description: methionine aminopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-50  171.4   1.0    2.3e-50  171.2   1.0    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   1.0   1.3e-54   2.3e-50       2     209 .]      14     242 ..      13     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 1.3e-54
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDi 92 
                    + r+a+ +a+++l+ +  +++pg+t++el+++++++++ + +      +++++   +++++n+ v+h++p  ++lk+gd+v+id+++  dg+++D+
     EHT98179.1  14 KARAAGHAAAQVLAMITPHVRPGITTEELDDICHDFIVNELNvtpanIGYHGYTRTTCTSVNHVVCHGIPAAKKLKDGDIVNIDVAIIKDGWYGDT 109
                    679*************999*****************777766888889999********************************************* PP

                    EEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEEEE CS
  Peptidase_M24  93 trTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvfti 186
                    +r+++vG+++ ++++l++++ + + a+ik v+pG+tl++i+aa+++++e+ag+ +++++++GHgvG   h + p++ +  ++++g +l++Gm+fti
     EHT98179.1 110 SRMYFVGTPSVRAKRLVDITYQSLVAGIKTVRPGATLGDIGAAIQRIAENAGF-SVVREYCGHGVGEIYHTD-PQILHygTPGEGMPLKAGMIFTI 203
                    *******77779*****************************************.999*************99.**977666669************ PP

                    EEEEEEET.........TT.......E.EEEEBEEEEEES CS
  Peptidase_M24 187 Epgiyfap.........ge.......g.gvriedtvlvte 209
                    Ep+i  a          g+       + ++++e+tv vt+
     EHT98179.1 204 EPMIN-AGkagtsvlsdGWtvvtkdrSlSAQWEHTVAVTD 242
                    **888.3224444444444788888877**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2254.41
//
Query:       EHT98180.1  [L=103]
Description: hypothetical protein CKS_3111 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   11.9   5.9       0.48   10.8   5.9    1.7  1  DUF3811   YjbD family (DUF3811)


Domain annotation for each model (and alignments):
>> DUF3811  YjbD family (DUF3811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.9   2.7e-05      0.48      44      85 ..      56     100 ..       5     103 .] 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.7e-05
     DUF3811  44 aidkimaereaaakkara...ekkkekakpdssetfsWsaststR 85 
                 + dk+ +e+ +a k+ ++   +kk + ++ ++ + f+Wsas+ + 
  EHT98180.1  56 MADKLLKEKLKAEKENKKpvrKKKPSSLTASEVSDFNWSASVAKG 100
                 33455555544444444443266667777778889******9873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1886  (0.105193); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 830.63
//
Query:       EHT98181.1  [L=227]
Description: hypothetical protein CKS_3110 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0058   16.9   0.7     0.0058   16.9   0.7    2.4  2  TctB           Tripartite tricarboxylate transporter TctB fam
  ------ inclusion threshold ------
      0.015   14.9   8.8       0.22   11.1   8.3    2.1  1  Bac_rhodopsin  Bacteriorhodopsin-like protein
       0.04   13.0   0.0      0.042   12.9   0.0    1.1  1  Amidinotransf  Amidinotransferase


Domain annotation for each model (and alignments):
>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.7   9.7e-07    0.0058      53     114 ..      43     130 ..      37     140 .. 0.82
   2 ?   -1.2   5.4      0.37   2.2e+03      36     124 ..     161     195 ..     138     210 .. 0.43

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.7e-07
        TctB  53 ekeekearedwrkllklvlallaalllyalllepl............................Gfilatalflllllg.reerkwlkalil 114
                 +++++ea++dw++ ++++++    ++lya+l   l                            Gf++++  ++l+ +g r++r+w ++l++
  EHT98181.1  43 QQKNHEAEADWKRTITFLAL---FVFLYAALGASLtldlspagashksieyaleavpvliafsGFFISVLYLFLVRAGsRQRRNWQRTLLI 130
                 67788899999999955555...777799998888899999999999999999*****************555455536889999999886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.37
        TctB  36 gvllallgllllvaadgekeekearedwrkllklvlallaalllyallleplGfilatalflllllgreerkwlkalilavvlallvyl 124
                 +++++++ +                                   ++++ ++l                    + ++ +++ v++l++  
  EHT98181.1 161 ALAMFICLT-----------------------------------WLIIYNYLT-------------------FTTSGVFGSVISLFIST 195
                 222222222...................................222222221...................12222222222222222 PP

>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.3   3.7e-05      0.22     137     202 ..     134     203 ..      52     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.7e-05
                    HHHHHHHTHHHHHHTTSTHHH.HHHHHHHHHHHHHHHHH...HHHHHHHSTTTTSSCHHHHHHHHHHHHH CS
  Bac_rhodopsin 137 vvlylllgelaraakslsser.rslfntLrnlvvvlwil...YpvawllgeeGngiqpdveavvygilDl 202
                    +++  ++   +++ + +s+    s++++L +++++ w++   Y   +  g++G +i  +++++vy+ilD+
     EHT98181.1 134 YTTGHVFKLTHQQGAGTSNYSlSSIMLALAMFICLTWLIiynYLTFTTSGVFGSVISLFISTMVYVILDI 203
                    5556666444444444444334899999999999998765558999999********************8 PP

>> Amidinotransf  Amidinotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.1e-06     0.042      32      82 ..       7      57 ..       5     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-06
                   HHHHHHHHHHHTTT-EEEEHHHHHHHHCTSHHHHHHHHHHHSSTTTTITTT CS
  Amidinotransf 32 kEHdafvqvLrekGveVlvledllaealeaeearkekldeklleselgikl 82
                   ++H+af+++L ++ v+V+ +++  ae ++++  ++ ++ ++  e+  + + 
     EHT98181.1  7 DDHKAFITALLDEPVDVIEMHSPHAEHIDRAYTVALQQKNHEAEADWKRTI 57
                   69*****************************99999998888777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 2031.74
//
Query:       EHT98182.1  [L=273]
Description: hypothetical protein CKS_3109 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-51  174.7   0.0    3.3e-51  174.5   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
      1e-14   54.7   0.0    1.3e-10   41.3   0.0    2.3  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
    2.5e-06   28.0   0.2    0.00055   20.4   0.0    3.1  3  HAD          haloacid dehalogenase-like hydrolase
    2.8e-06   27.8   0.1     0.0021   18.4   0.0    3.2  3  Hydrolase    haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.012   15.7   0.2       0.34   11.0   0.0    2.6  3  HAD_2        Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   0.0   9.2e-55   3.3e-51       1     255 []       6     262 ..       6     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 9.2e-55
                  EEEEIIIIIS-TTS---.HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTT.C CS
  Hydrolase_3   1 ialDlDGTLlnsdkkis.ektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkenn.v 96 
                  ia+D+DGT+l+++k+++ ++  +  + lkekgi++v+A+G++++++++++ +++ + +++a NGa++  + +++++  ++ ke v++++++l  +  +
   EHT98182.1   6 IAVDMDGTFLDENKQYNvQRFSRQYALLKEKGIHFVVASGNQYYQLQRYFPDIKNEIAFVAENGAWV-SHGDEVIFCGELAKERVHSVLDILAREPdI 102
                  89*************999*************************************************.************************99999* PP

                  EEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTE...EEEEESTTEEEEEETT-SHHHH CS
  Hydrolase_3  97 eillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnkll...titssskgyleimpkgvsKgta 191
                  ++++++ +++yv+++    +++    k++ ++ e++++ ++ d++++k+ +   +e +++l  +l  +l++     + +ss+ g+++++ +g++K+++
   EHT98182.1 103 SVVVCGRKSAYVHTS--MPDSVIGMLKNHYYRLEKRDNLYDIDDTVFKFSLNLAHEGIESLMTRLHIQLGEIDhimHPVSSGYGFIDLIIPGCHKAHG 198
                  ***************..666666666777778888888888899**********************999875477899******************** PP

                  HHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 192 lkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  +  l+++++is  ev+a+GD+ NDieML +a +++Am+na e v ++A++ t+sn+++G ++++
   EHT98182.1 199 IALLQQKWGISDCEVVAVGDSANDIEMLRQACFSFAMANAGEAVSAVARFKTESNTDEGALNVI 262
                  **********************************************************998876 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   4.9e-05      0.18       3      49 ..       4      51 ..       2      60 .. 0.86
   2 !   41.3   0.0   3.5e-14   1.3e-10     115     212 ..     144     241 ..      99     257 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
                EEEEE-TBTTTB..S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHH CS
        S6PP  3 lllvsdLDntlv.dgdnealarlnelleaeerkdvllvfaTGRsldsa 49
                ++++ d+D+t++ ++++ +++r+ +     ++k + +v+a+G ++ + 
  EHT98182.1  4 RMIAVDMDGTFLdENKQYNVQRFSRQYALLKEKGIHFVVASGNQYYQL 51
                699*********55566789*****9999*************887665 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 3.5e-14
                 -BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HH CS
        S6PP 115 qrehKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqee 212
                  + +K+S ++ +e  +++++ l+ +L + +  ++ + s   ++D++  +  k++ ++ L++k+++   +++ +Gds nD+e+l++   +  ++na e+
  EHT98182.1 144 DTVFKFSLNLAHEGIESLMTRLHIQLGEIDHIMHPVSSGYGFIDLIIPGCHKAHGIALLQQKWGISDCEVVAVGDSANDIEMLRQACFSFAMANAGEA 241
                 678*******************************************************************************************9887 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.28   9.9e+02       3      16 ..       8      21 ..       6      36 .. 0.69
   2 ?    3.7   0.0      0.02        72      95     117 ..      31      53 ..      20     108 .. 0.75
   3 !   20.4   0.0   1.5e-07   0.00055     120     188 .]     167     227 ..     156     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.28
         HAD  3 fDfDgTLldgdsle 16
                 D+DgT ld++  +
  EHT98182.1  8 VDMDGTFLDENKQY 21
                7********98877 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.02
         HAD  95 aahraaGdrvvvvSgglrplvep 117
                 a  +++G+++vv Sg+  + +++
  EHT98182.1  31 ALLKEKGIHFVVASGNQYYQLQR 53 
                 3455***********98777766 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 1.5e-07
         HAD 120 aelg.adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                  +lg +d+++         ++ ++g ++ ++ g +k++ ++    ++++gi+ +evva+GDs +D+++lr
  EHT98182.1 167 IQLGeIDHIMHP-------VSSGYGFIDLIIPGCHKAHGIAL--LQQKWGISDCEVVAVGDSANDIEMLR 227
                 466766666666.......77777888888889899999999..999*********************98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.063   2.3e+02       2      17 ..       4      19 ..       3      32 .. 0.81
   2 ?    3.8   0.0     0.017        61     129     157 ..      32      61 ..      28     106 .. 0.66
   3 !   18.4   0.0   5.8e-07    0.0021     177     209 ..     197     229 ..     141     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.063
                SEEEEESBTTTBCHHH CS
                xxxxxxxxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLttgep 17
                + ++ D+dGT ++ ++
  EHT98182.1  4 RMIAVDMDGTFLDENK 19
                6799******998874 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.017
                 HHHHTTEEEEEEESSEHHHHHHHHHHTT.G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
   Hydrolase 129 sLkaagievvlltgdnpetaeraanqlG.d 157
                  Lk++gi  v+++g++    +r    +  +
  EHT98182.1  32 LLKEKGIHFVVASGNQYYQLQRYFPDIKnE 61 
                 69**************99888877775543 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 5.8e-07
                 HHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 177 egkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                  g   + ++ +++  ev++VGD++nD+++l++A
  EHT98182.1 197 HGIALLQQKWGISDCEVVAVGDSANDIEMLRQA 229
                 444444555678999****************98 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.048   1.7e+02       4      20 ..       9      26 ..       6      65 .. 0.73
   2 ?   -3.1   0.0       1.9     7e+03       3      10 ..     140     147 ..     139     178 .. 0.53
   3 ?   11.0   0.0   9.4e-05      0.34     139     176 ..     197     234 ..     192     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.048
       HAD_2  4 DlDgTlldtee.liiqaf 20
                D+DgT ld+++ + +q f
  EHT98182.1  9 DMDGTFLDENKqYNVQRF 26
                9*****998751555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
       HAD_2   3 FDlDgTll 10 
                 +D+D+T  
  EHT98182.1 140 YDIDDTVF 147
                 56666653 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 9.4e-05
       HAD_2 139 eviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                   i+ + +k +++  ev+ vGDs +Die  ++a   ++
  EHT98182.1 197 HGIALLQQKWGISDCEVVAVGDSANDIEMLRQACFSFA 234
                 56778888999*****************9988876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2310.53
//
Query:       EHT98183.1  [L=420]
Description: uncharacterized DUF1479 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-131  437.8   0.1   4.2e-131  437.5   0.1    1.0  1  DUF1479   Protein of unknown function (DUF1479)


Domain annotation for each model (and alignments):
>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.5   0.1  2.4e-135  4.2e-131       2     414 ..      13     417 ..      12     419 .. 0.98

  Alignments for each domain:
  == domain 1  score: 437.5 bits;  conditional E-value: 2.4e-135
                 THHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-EEEHHHHHCT---HHHHHHHHHHTEEEEETSS-HHHHHHHHHHHHHHHH CS
     DUF1479   2 pLpsrfadlkrkLveeeakeeevkaswerlikaleeeieeikekgseliPeidfkdieegavsaefsaeikrrGvlvvrgvvpeeeaeewkeeikeYle 100
                 ++++++++ k++ +++ ++ e+v++++ + +++  +e++  +++  +++P +  + i++g+vs e++ +ikrrG++vvr+++p+e+a +w++++ +Yl+
  EHT98183.1  13 DISASIRNFKQRARKQIGDVERVFRQVCQKTEEAIAEARLEEAQTGSAWPIVTGEAIASGTVSPETRVRIKRRGCVVVRQHFPREQALAWDADMLRYLD 111
                 677899********************************************************************************************* PP

                 HT..........SS.HHHTTSSS-CEE-----HHHHHHHCSHHHHHHHHHHHTTSB-E.TTEESSEEEEE------EEEE-TT--B--ECCEESS-STH CS
     DUF1479 101 kn..........sd.ikglpkekpqiyelyWskaqvkaRahpnvlaaqkflnslwese.dekkrislatpitYaDrlrirkpgdasfaLgphvDgGsle 187
                 +n          ++ +++l +++p+iy +yWs+aq++aR+ p++ ++q+fln+lw+ e + +++++++++i Y+Dr+r+r pg++s++Lg+h+D+G+le
  EHT98183.1 112 ENqfdaqyrgpgDNfFGSLEASRPEIYPIYWSQAQMQARQRPEMHQVQSFLNRLWTYEsEGQRWFDPDVNILYPDRIRRRLPGTTSKGLGAHTDSGALE 210
                 ***********97789****************************************99899************************************** PP

                 HHH-HHHHHHTHHHHTS-GGG--TTB-TTGGG-----..STT--SS--SEEEEEESS-B-TTCT-EEE-S-TT.HHHHHHHHCCSTTS-.......... CS
     DUF1479 188 RWedeeYrkvYkkvfeGeweeydpwdaaeRveakedlyngagacsvfRtfQGwlalsdvkpgeGtlrvlPlvklataYllLRpffeekkeeeelaeelk 286
                 RW+  +Y++v+++vf+G++++ydpw+aa+R++++e+ +  +++csvfRtfQGw+alsd+ pg+G+l+v+P++  a+aYllLRp++++++          
  EHT98183.1 211 RWLLPAYQRVFHAVFNGDIDRYDPWNAAHRSDVDEYDVPDTTKCSVFRTFQGWTALSDMIPGQGLLHVVPVPM-AMAYLLLRPLLSDVP---------- 298
                 ************************************************************************9.**************9.......... PP

                 ...TT-STT--TTS-EE--TTT-HH..HHTT-EE---B-TT-EEEEETT--EEE-SBCSSSS-EEEEE--B-EESHHHHHHHHHHHHHHHHT---TTS- CS
     DUF1479 287 eeqdsklpgavpgsaqelteelhphLelketlvsiPdleaGDyvvWhcdlihavdkehegkkdssvlYipavPltqknaeylarqrkaflrgkpppDFp 385
                    +++l+g++pg+++ ++e++hph  l + l+++P ++aGD+v+Whcdlihav+++++++++ +v+Yipa+P++ kn +y++++++a+ +g++p DFp
  EHT98183.1 299 ---EDELCGVAPGRVLPVNEKWHPH--LMKGLCPVPAITAGDSVWWHCDLIHAVAPVENQQGWGNVMYIPAAPMCDKNRAYAHHVAHALKQGHSPADFP 392
                 ...789*******************..9*********************************************************************** PP

                 S--G...GGG-TT---GGG--HH.HHHCT CS
     DUF1479 386 segsGlgeaefagrlteedlreveGlral 414
                  e++   ea++++r+t +dl+   G+r+l
  EHT98183.1 393 PEHY---EADWKNRFTLADLNPL-GKRSL 417
                 *999...***************9.99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3488.75
//
Query:       EHT98184.1  [L=249]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-38  132.8   0.0    1.5e-38  132.2   0.0    1.2  1  DeoRC           DeoR C terminal sensor domain
    2.3e-16   59.2   1.6    4.3e-16   58.4   1.6    1.5  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    1.9e-07   30.9   2.6    2.6e-07   30.5   0.9    2.0  2  HTH_11          HTH domain
      3e-05   23.9   0.8    0.00017   21.5   0.0    2.1  2  HTH_Mga         M protein trans-acting positive regulator (MG
     0.0018   18.0   1.6      0.011   15.5   1.6    2.2  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0022   17.6   1.3     0.0045   16.6   1.3    1.6  1  GntR            Bacterial regulatory proteins, gntR family
     0.0034   16.9   2.5      0.026   14.1   0.3    2.6  3  HTH_24          Winged helix-turn-helix DNA-binding
     0.0056   17.0   0.1      0.012   16.0   0.1    1.5  1  FaeA            FaeA-like protein
  ------ inclusion threshold ------
       0.01   15.7   1.6      0.011   15.6   0.1    1.8  2  HTH_5           Bacterial regulatory protein, arsR family
      0.015   15.7   1.0      0.024   15.0   0.1    1.8  1  Rrf2            Transcriptional regulator
      0.037   13.6   0.4      0.099   12.2   0.4    1.8  1  Sigma70_r4      Sigma-70, region 4
      0.054   13.4   0.2      0.094   12.7   0.2    1.4  1  DUF977          Bacterial protein of unknown function (DUF977
      0.062   13.2   0.2      0.062   13.2   0.2    1.9  2  MarR            MarR family
      0.083   12.9   0.2       0.37   10.8   0.1    2.1  2  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
       0.13   10.5   0.2       0.15   10.2   0.2    1.1  1  Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
       0.13   12.3   2.1       0.15   12.0   0.5    1.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.33   11.1   2.0       0.39   10.8   0.1    2.1  3  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   1.4e-41   1.5e-38       5     159 ..      72     225 ..      68     226 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 1.4e-41
       DeoRC   5 eKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgangi 103
                  K+++A++Aa  +++g+++f+++G+T+++la aLa++knlt +T s  +a+ L+e+ d++vi+lGG+++k+ses++gpl+  +++q +++kaf+ga+g+
  EHT98184.1  72 IKQALARYAAGRVNEGESVFIEGGSTNALLALALASRKNLTLITVSHYIAHLLKEA-DCEVIVLGGRLQKSSESMTGPLTRYCIQQTHFHKAFIGADGW 169
                 59*****************************************************9.****************************************** PP

       DeoRC 104 daegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 ++e+g+t  d+ +  v  a++++ ++ ++l+DssKfg+  ++ + +  +  ++it+
  EHT98184.1 170 HPETGFTGRDMLRCDVVDAVLAKDAESYVLTDSSKFGQLYPYPLSPGYAPRHVITE 225
                 **************************************999999888888888876 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   1.6   4.1e-19   4.3e-16       1      56 [.       4      59 ..       4      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 4.1e-19
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                R+e+i+el++ +g+++v el+    vSe TiR DL++Le+q +l+R+hG a +++s
  EHT98184.1  4 RQEKIIELVNARGSITVSELARVVSVSEVTIRQDLTQLEQQRVLRRVHGAAIALDS 59
                9**************************************************99886 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.9   2.5e-10   2.6e-07       1      42 [.       4      44 ..       4      54 .. 0.94
   2 ?   -1.1   0.0       1.7   1.8e+03      21      40 ..     105     125 ..      97     137 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.5e-10
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeel 42
                R+++i+el+ +arg i+ +eLA+  +vS+ t+r+d+ +Le +
  EHT98184.1  4 RQEKIIELV-NARGSITVSELARVVSVSEVTIRQDLTQLEQQ 44
                89*******.*****************************975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
      HTH_11  21 LAeeLnvSrrtvrrdIkaL.e 40 
                 LA + n++  tv  +I+ L +
  EHT98184.1 105 LASRKNLTLITVSHYIAHLlK 125
                 666667777788888877744 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.6e-07   0.00017       5      44 ..       3      41 ..       2      43 .. 0.95
   2 ?    0.3   0.2      0.69   7.2e+02      26      44 ..     105     123 ..      99     126 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.6e-07
     HTH_Mga  5 krklkLlelLteneksltldelakeLglseltlqsdiseL 44
                +r+ k++el+   ++s+t++ela   + se+t+++d+++L
  EHT98184.1  3 TRQEKIIELVNA-RGSITVSELARVVSVSEVTIRQDLTQL 41
                5999********.**************************9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.69
     HTH_Mga  26 lakeLglseltlqsdiseL 44 
                 la++ +l+  t+ ++i +L
  EHT98184.1 105 LASRKNLTLITVSHYIAHL 123
                 5666677888888888776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.6   1.1e-05     0.011       7      36 ..       7      36 ..       6      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlr 36
                   kI+e+  + ++i+++eLA+ v +Se t+++
     EHT98184.1  7 KIIELVNARGSITVSELARVVSVSEVTIRQ 36
                   8*************************9986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.3   4.3e-06    0.0045      23      62 ..      17      55 ..       5      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.3e-06
                B---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR 23 kLPsereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                 + +++eLa    Vs  t+R+ L +Le++ ++ r +g ++
  EHT98184.1 17 SI-TVSELARVVSVSEVTIRQDLTQLEQQRVLRRVHGAAI 55
                56.89*******************************9876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   2.4e-05     0.026       1      36 [.       1      36 [.       1      48 [. 0.84
   2 ?    2.1   0.1      0.13   1.4e+02      23      44 ..     105     126 ..     100     126 .. 0.87
   3 ?   -3.5   0.0       7.9   8.3e+03      38      45 ..     233     240 ..     231     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnr 36
                ++  + kI+el+ + ++i+ +eLA+ + +S  t+++
  EHT98184.1  1 MNTRQEKIIELVNARGSITVSELARVVSVSEVTIRQ 36
                688999*********************999866665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.13
      HTH_24  23 LAerlglSpstvnrrlkrLeee 44 
                 LA r +l++ tv+ ++  L +e
  EHT98184.1 105 LASRKNLTLITVSHYIAHLLKE 126
                 788889**********999875 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.9
      HTH_24  38 lkrLeeeG 45 
                 ++rL+e+G
  EHT98184.1 233 VNRLTEQG 240
                 78999987 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05     0.012       2      48 ..       5      50 ..       4      53 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  2 keeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                +e+I+e +n  +++ + +e+A  +++s   +R  L qLe++  ++r+
  EHT98184.1  5 QEKIIELVNA-RGSITVSELARVVSVSEVTIRQDLTQLEQQRVLRRV 50
                799*******.*********************************998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   1.1e-05     0.011       6      45 ..       7      47 ..       4      49 .. 0.90
   2 ?   -1.9   0.2         3   3.2e+03      31      41 ..     115     125 ..     115     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
                HHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  6 kILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                kI+ l++  g+ +v+ela+ + +s+ t+++ L +L++++++
  EHT98184.1  7 KIIELVNArGSITVSELARVVSVSEVTIRQDLTQLEQQRVL 47
                67888877799**************************9876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3
                 HHHHHHHHHHH CS
       HTH_5  31 tvShHLkkLre 41 
                 tvSh+ + L +
  EHT98184.1 115 TVSHYIAHLLK 125
                 89**9999877 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   2.2e-05     0.024      22      61 ..      14      53 ..       8      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-05
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksvrGk 61
                 +++++++e+a+ +++s++ +++ l++L+++ +++ v G+
  EHT98184.1 14 ARGSITVSELARVVSVSEVTIRQDLTQLEQQRVLRRVHGA 53
                45679******************************99997 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   9.4e-05     0.099       6      39 ..       2      36 ..       1      41 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
                -HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  6 pererevlelrf.geglTleEIgerlgiSrerVrq 39
                + r+ +++el+      T +E++++  +S+ ++rq
  EHT98184.1  2 NTRQEKIIELVNaRGSITVSELARVVSVSEVTIRQ 36
                789*********98899*****************9 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   8.9e-05     0.094      14      50 ..       5      41 ..       2      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.9e-05
      DUF977 14 keriiGlvkkneritisdleritGvgrtsvrkylvdv 50
                +e+ii lv  ++ it+s+l r++ v   ++r+ l + 
  EHT98184.1  5 QEKIIELVNARGSITVSELARVVSVSEVTIRQDLTQL 41
                589****************************998764 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.9e-05     0.062       5      50 ..       5      50 ..       1      53 [. 0.89
   2 ?   -1.3   0.1       2.1   2.2e+03      22      43 ..     104     125 ..      97     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRs 50
                q +i++++  +g+++vseLa+ ++vs  t+   l++Le++  ++R 
  EHT98184.1  5 QEKIIELVNARGSITVSELARVVSVSEVTIRQDLTQLEQQRVLRRV 50
                668999999*****************************99777775 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
                 HHHHHHTS-HHHHHHHHHHHHH CS
        MarR  22 eLakklgvskstvtrvldrLek 43 
                  La++ +++  tv+  + +L k
  EHT98184.1 104 ALASRKNLTLITVSHYIAHLLK 125
                 5899999999999999999987 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00035      0.37      28      48 ..      18      38 ..       7      39 .. 0.84
   2 ?   -1.5   0.0       2.5   2.7e+03       4      21 ..     230     237 ..     228     244 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
                    E-HHHHHHHCTS-HHHHHHHH CS
  Put_DNA-bind_N 28 iSSteLaealgvtaaqvRKDL 48
                    i  +eLa+ + v+++++R+DL
      EHT98184.1 18 ITVSELARVVSVSEVTIRQDL 38
                    5567****************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.5
                     HHHHHHHHHHHHHHHHHH CS
  Put_DNA-bind_N   4 eatikRLplYlryLeelk 21 
                       t++RL           
      EHT98184.1 230 ADTVNRL----------T 237
                     5566666..........4 PP

>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00015      0.15     431     511 ..      15      90 ..       4     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                     G----HHHHHHHTTSHHHHHHTT--HHHHHHHHHHHHHHT--S-SSHHHHHHTT----SSSSHHHHHHHHHHHHSS-STT- CS
  Exonuc_V_gamma 431 esrftasevldlLevpavarrfgldeedleqlrewlaeagirwGldaehreelglpadeqnswrfgLdRlllGyalgeeng 511
                        +t+se+ ++++v++v  r +l++ + +++ + ++ a i    d+ + +      + ++s++++L R   G + + e+ 
      EHT98184.1  15 RGSITVSELARVVSVSEVTIRQDLTQLEQQRVLRRVHGAAIALDSDNVSTR-----MNTRFSIKQALARYAAGRVNEGESV 90 
                     55689*************************************666666555.....69************99988776443 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   0.00015      0.15      21      53 ..      17      49 ..       3      60 .. 0.83
   2 ?   -2.1   0.0       3.8     4e+03      27      45 ..     105     123 ..     101     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                ++t  elA+ + ++ +t+ + l++L+++ +++r
  EHT98184.1 17 SITVSELARVVSVSEVTIRQDLTQLEQQRVLRR 49
                68999**************************95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.8
                 HHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  27 lAsmlGltretvsrilseL 45 
                 lAs+ +lt  tvs  +++L
  EHT98184.1 105 LASRKNLTLITVSHYIAHL 123
                 7888888888998877776 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00037      0.39      17      57 ..      10      50 ..       6      52 .. 0.87
   2 ?   -3.0   0.1       7.8   8.2e+03      27      49 ..     102     124 ..      98     128 .. 0.58
   3 ?   -2.9   0.0       6.9   7.3e+03      11      19 ..     181     189 ..     179     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
                HHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 17 raLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                 + + ++  t+sela+ +++s  t+++ L +Le+   +++v
  EHT98184.1 10 ELVNARGSITVSELARVVSVSEVTIRQDLTQLEQQRVLRRV 50
                555778899************************99988876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.8
                 HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_20  27 aselaerldlskntlsyHLrvLe 49 
                 a +la r  l+  t+s+ ++ L 
  EHT98184.1 102 ALALASRKNLTLITVSHYIAHLL 124
                 55566666666667777775554 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.9
                 HHHHHHHHH CS
      HTH_20  11 vRrrilraL 19 
                  R+++ +a 
  EHT98184.1 181 LRCDVVDAV 189
                 799999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1943.66
//
Query:       EHT98185.1  [L=335]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-33  116.5   0.0    7.1e-33  114.3   0.0    2.1  2  Peripla_BP_3    Periplasmic binding protein-like domain
      6e-21   75.1   0.0      8e-21   74.7   0.0    1.2  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    5.4e-19   67.7   1.3    1.5e-18   66.3   0.2    2.3  2  LacI            Bacterial regulatory proteins, lacI family
    4.6e-16   59.2   0.0    8.3e-16   58.3   0.0    1.4  1  Peripla_BP_4    Periplasmic binding protein domain
     0.0001   22.3   0.4      0.018   15.1   0.1    2.9  2  HTH_7           Helix-turn-helix domain of resolvase
    0.00046   20.5   0.1      0.001   19.4   0.1    1.5  1  HTH_31          Helix-turn-helix domain
     0.0005   20.1   0.1    0.00099   19.1   0.1    1.5  1  HTH_3           Helix-turn-helix
     0.0023   17.7   0.2     0.0058   16.4   0.2    1.7  1  TetR_N          Bacterial regulatory proteins, tetR family
     0.0056   16.4   0.8      0.061   13.1   0.1    3.1  3  HTH_38          Helix-turn-helix domain
     0.0063   16.3   0.2      0.019   14.8   0.1    1.9  2  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.1       0.14   11.9   0.0    2.5  2  HTH_23          Homeodomain-like domain
      0.031   14.1   0.2       0.12   12.2   0.1    2.1  2  MarR_2          MarR family
      0.068   13.0   0.3       0.16   11.8   0.3    1.6  1  MerR            MerR family regulatory protein
      0.074   12.5   0.3       0.15   11.5   0.3    1.5  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.074   12.9   0.1       0.16   11.9   0.1    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.11   12.5   0.1       0.25   11.3   0.1    1.6  1  HTH_6           Helix-turn-helix domain, rpiR family
       0.11   12.7   0.2       0.24   11.6   0.2    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.17   12.3   0.0       0.39   11.2   0.0    1.7  1  HTH_26          Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.5   1.5e+03      51      65 ..      97     127 ..      51     170 .. 0.45
   2 !  114.3   0.0   7.2e-36   7.1e-33       1     166 []     171     331 ..     171     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.5
                   -SS-SSHHHHH.................... CS
  Peripla_BP_3  51 addpaaaaaaraal................l 65 
                   ad +++aa+ raa+                +
    EHT98185.1  97 ADGKHTAAEERAAIqflldlrcdgiiiyprF 127
                   4444444444444433333333333322221 PP

  == domain 2  score: 114.3 bits;  conditional E-value: 7.2e-36
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   v+hL+e+Ghr+iafi+  g+ ++++s+er+ g++ al+++g+ +n+ ++ +  ++a++++ a +   +l ++++   A++a +De+A+g++++l+e 
    EHT98185.1 171 VNHLLEQGHRDIAFIT--GSLDSPTSQERLSGYQAALSAAGIAPNPQLIVQGKWTAQSGMLAVK---SLlAGGEFFSAIVASNDEMAIGAIKQLTEN 262
                   78**************..999***************************************9988...2223333226******************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +++vP ++svigfdd++la ++ P+l++++ p+ ++  + ++ l+++l+g +  +++  ++  lv R+S+
    EHT98185.1 263 NIAVPARVSVIGFDDIPLAPYVIPSLSSMKFPVTDMINETINRLVAMLDGGELIQRKPFIAS-LVSRDSV 331
                   ************************************************99998888888866.*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   8.1e-24     8e-21       2     223 ..      60     277 ..      59     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 8.1e-24
                   EEEEEEES-T..TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TT CS
  Peripla_BP_1   2 lklglvlpql..dePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapd 93 
                   +++glv+ +   +   f +l++   +  ++++++++l a+g++  ++  +ai+ l+  + dg+ii  +  s d++ a  +    p++ +++   +  
    EHT98185.1  60 QTIGLVVTNTlySGNIFSELMSHSARIMEQQNRQLIL-ADGKHTAAEerAAIQFLLDLRCDGIIIYPRFLSIDELDAIISDhKQPILVINRRLRIH- 154
                   6788888887666667999999999999999999876.666666666699****************999999999998888889********9999. PP

                   TS-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHH CS
  Peripla_BP_1  94 gvPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivainde 190
                      cv+ d+  ag  +  +L+++gh+  ia + g   + t++er  G+ aal +aG     + + +g  + + + +a+++ll  +  ++aiva nde
    EHT98185.1 155 ESFCVFSDQQAAGRLAVNHLLEQGHRD-IAFITGSLDSPTSQERLSGYQAALSAAGIAPNPQLIVQGKWTAQSGMLAVKSLLAGGEFFSAIVASNDE 250
                   7789***********************.*****************************778889999*******************9999******** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHH CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydg 223
                   +a+Ga+  l  ++ +  +  v     sv ++d 
    EHT98185.1 251 MAIGAIKQLTENN-IAVPARV-----SVIGFDD 277
                   ************9.9999999.....7777776 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.2   1.5e-21   1.5e-18       1      46 []       3      48 ..       3      48 .. 0.99
   2 ?   -1.2   0.1       1.8   1.8e+03       8      41 ..      54      90 ..      53      91 .. 0.69

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.5e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti +VA++AGVSkaTVSrvL+++++V +e re V++a++e +Y+Pn
  EHT98185.1  3 TISEVAKRAGVSKATVSRVLSGNGYVGKEKREHVLQAIAETGYRPN 48
                89*******************************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
                HCTS-HHHHHHHCTTS...SSSTHHHHHHHHHHHHHT CS
        LacI  8 lAGVSkaTVSrvLnnk...erVseetrerVeaameel 41
                lA+ S++T+  v+ n+   +++  e+    +++me++
  EHT98185.1 54 LANKSTQTIGLVVTNTlysGNIFSELMSHSARIMEQQ 90
                6777899999999888666666666666666666666 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   8.4e-19   8.3e-16      28     220 ..      91     279 ..      64     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.4e-19
                   TCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSH..HHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH CS
  Peripla_BP_4  28 gaevtvvgdaendaaeQvaqiedaiakgvdgiivapvds..talapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeylaeklggk 122
                   + + ++ +d++ +aae+ a+i+ +++  +dgii+ p     ++l +++ +    + p+ ++++        + +v  d++aaG+l+ + l+e+    
    EHT98185.1  91 NRQLIL-ADGKHTAAEERAAIQFLLDLRCDGIIIYPRFLsiDELDAIISD---HKQPILVINRR--LRIHESFCVFSDQQAAGRLAVNHLLEQGH-- 179
                   333333.89**************************987633555555554...33489999999..8889999*********************9.. PP

                   .EEEEEETSCCCHHHHHHHHHHHHHHHHH...-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHCHHHHHHHTTT..TSTEEE CS
  Peripla_BP_4 123 kgkvvilaGspgdpnaeeriegfrkvlke...ypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaegalealeaagl..agkvvv 213
                     +++ ++Gs+++p ++er+ g  ++l +   +p+ +++    ++ w+a+ +  a+ +ll+  +   +i+a nd+ma+ga++ l ++++    +v v
    EHT98185.1 180 -RDIAFITGSLDSPTSQERLSGYQAALSAagiAPNPQLIV---QGKWTAQSGMLAVKSLLAGGEfFSAIVASNDEMAIGAIKQLTENNIavPARVSV 272
                   .57************************9988855555543...459***************7777************************6444455* PP

                   EEES-HH CS
  Peripla_BP_4 214 tgqDatp 220
                   +g+D  p
    EHT98185.1 273 IGFDDIP 279
                   ***9765 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.8e-05     0.018      22      44 ..       2      24 ..       2      25 .. 0.92
   2 ?    4.3   0.0     0.043        43       7      24 ..     300     316 ..     297     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
                --STTTSSSS---SSSS--SS-- CS
       HTH_7 22 isiskIAkevnisRsTvYRylad 44
                ++is++Ak+ ++s++Tv R+l+ 
  EHT98185.1  2 TTISEVAKRAGVSKATVSRVLSG 24
                58******************986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.043
                 -HHHHGGGGSSTTTT--S CS
       HTH_7   7 skndinrvvkLleeGisi 24 
                 ++ +inr+v++l+ G+ i
  EHT98185.1 300 NE-TINRLVAMLDGGELI 316
                 45.8***********755 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     1e-06     0.001      17      52 ..       4      42 ..       2      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-06
      HTH_31 17 qeevAerlgvsestlsrlEqGrrgrp....spavlealar 52
                  evA+r+gvs++t+sr+ +G    +    +++vl a+a+
  EHT98185.1  4 ISEVAKRAGVSKATVSRVLSGNGY-VgkekREHVLQAIAE 42
                679*******************97.867777778887775 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   9.9e-07   0.00099      10      46 ..       2      42 ..       1      43 [. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.9e-07
                HHHHHHHHHHTSSHHHHHHHHTT....SSCSBHHHHHHHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnG....ernPsletlkklak 46
                 ++ e+A+++Gvs++t+sr  +G      + +  +l+++a+
  EHT98185.1  2 TTISEVAKRAGVSKATVSRVLSGngyvGKEKREHVLQAIAE 42
                5889*******************888888888888888886 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   5.9e-06    0.0058      17      34 ..       2      19 ..       1      20 [. 0.93

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.9e-06
                --HHHHHHHHTSSHHHHH CS
      TetR_N 17 ttvreIAkrAGvskgalY 34
                tt++e+AkrAGvsk+++ 
  EHT98185.1  2 TTISEVAKRAGVSKATVS 19
                8***************86 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   6.1e-05     0.061      22      42 ..       3      23 ..       2      25 .. 0.90
   2 ?   -1.1   0.0       1.7   1.6e+03      17      37 ..      41      62 ..      31      63 .. 0.65
   3 ?   -1.8   0.0       2.7   2.7e+03       4      17 ..     101     114 ..      99     116 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.1e-05
      HTH_38 22 slreIArrLgrspsTIsRElk 42
                +++e+A+r g+s+ T+sR l 
  EHT98185.1  3 TISEVAKRAGVSKATVSRVLS 23
                789***************996 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
      HTH_38 17 laeGlslreIArrL.grspsTI 37
                 + G+     Ar L ++s++TI
  EHT98185.1 41 AETGYRPNLLARNLaNKSTQTI 62
                3567777777887757888888 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
      HTH_38   4 hLsleeReeIerll 17 
                 h   eeR  I+ ll
  EHT98185.1 101 HTAAEERAAIQFLL 114
                 55669*****9776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.9e-05     0.019      20      40 ..       3      23 ..       1      24 [. 0.91
   2 ?   -2.5   0.0       4.7   4.7e+03       8      16 ..      36      44 ..      35      58 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                t+se+A+r+g++k+tv+R L+
  EHT98185.1  3 TISEVAKRAGVSKATVSRVLS 23
                89****************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
                HHCT-CTTB CS
    HTH_IclR  8 iLdalaeap 16
                +L+a+ae++
  EHT98185.1 36 VLQAIAETG 44
                788998876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.14      19      39 ..       3      23 ..       2      26 .. 0.93
   2 ?   -1.1   0.0       1.8   1.8e+03       5      25 ..      31      52 ..      29      63 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
      HTH_23 19 svreIAreLgvsrrTvyrwlk 39
                +++e+A++ gvs+ Tv+r+l+
  EHT98185.1  3 TISEVAKRAGVSKATVSRVLS 23
                789***************986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.8
      HTH_23  5 reRlrillllae.GlsvreIAr 25
                ++R ++l++ ae G+++   Ar
  EHT98185.1 31 EKREHVLQAIAEtGYRPNLLAR 52
                6788999999999988655555 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00013      0.12      23      42 ..       3      22 ..       1      24 [. 0.93
   2 ?   -3.4   0.0       9.8   9.7e+03      22      39 ..     169     186 ..     164     190 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                EHHHHHHHHTSSHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsril 42
                t++e+a+r g+sk++vsr+l
  EHT98185.1  3 TISEVAKRAGVSKATVSRVL 22
                89****************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.8
                 EEHHHHHHHHTSSHHHHH CS
      MarR_2  22 ltvgelarrlglsksavs 39 
                 l+v+ l +  + + + ++
  EHT98185.1 169 LAVNHLLEQGHRDIAFIT 186
                 667777666666655555 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00016      0.16       1      16 [.       3      18 ..       3      19 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                tI+evA+++Gvs  t+
  EHT98185.1  3 TISEVAKRAGVSKATV 18
                8************996 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00015      0.15      28      48 ..       2      22 ..       1      23 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwril 48
                   ++++vA++ gvS  TV r+l
    EHT98185.1  2 TTISEVAKRAGVSKATVSRVL 22
                  69*****************97 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00016      0.16      24      57 ..       3      33 ..       1      47 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
                HHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 24 tadeiaeelgvprskvYevLrsLedkGlVerekg 57
                t++e+a+++gv++++v +vL+     G+V +ek+
  EHT98185.1  3 TISEVAKRAGVSKATVSRVLS---GNGYVGKEKR 33
                899***************985...5666666655 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00026      0.25      36      54 ..       3      21 ..       1      29 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
                -HHHHHHHTT--HHHHHHH CS
       HTH_6 36 sikalAkaaavSeativrf 54
                +i+++Ak a+vS+at+ r+
  EHT98185.1  3 TISEVAKRAGVSKATVSRV 21
                89**************997 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00024      0.24      26      60 .]       5      36 ..       1      36 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                    HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE CS
  Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekdGyveyekykgl 60
                    +++a+r +vs+++Vs     L+ +Gyv  ek+ ++
      EHT98185.1  5 SEVAKRAGVSKATVSRV---LSGNGYVGKEKREHV 36
                    79*************87...689****99999986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00039      0.39      11      34 ..       1      25 [.       1      43 [. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
      HTH_26 11 i.tkseLargtgisaatlsrlvkgk 34
                + t+se+a+++g+s+at+sr ++g 
  EHT98185.1  1 MtTISEVAKRAGVSKATVSRVLSGN 25
                5589******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2663.76
//
Query:       EHT98186.1  [L=482]
Description: PTS system arbutin/salicin/cellobiose-specific enzyme II component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-40  137.7  30.8    8.1e-40  136.8  30.8    1.4  1  PTS_EIIC  Phosphotransferase system, EIIC
    1.7e-14   53.0   0.2    3.2e-14   52.1   0.2    1.5  1  PTS_EIIB  phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8  30.8     9e-44   8.1e-40       3     324 .]     112     395 ..     110     395 .. 0.92

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 9e-44
    PTS_EIIC   3 gfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvlll 101
                 ++++ ip++i g+++ +l++         l+++gv++  ss+  il+++g+++f +Lp+++a+++a ++  ++++ +++a++ +l++++   +i ++++
  EHT98186.1 112 TMSPLIPAIIGGSMVKLLAM--------ILDMAGVFDKGSSTLIILNVIGDGAFFFLPVMVAASAALKF--KTNMSLAIAIAGVLVHPT---FIDLMAK 197
                 799*****************........4556889999*******************************..****************88...7****** PP

    PTS_EIIC 102 aagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsgs 200
                 aa++    + ++++++++++++++++i++l+++++++ +e+++ +  P +   f++++++++i + ++++++g+++ +i+++i+ ++ +    ++g+ +
  EHT98186.1 198 AAQG---QHVEFASVPVTAVKYTYTVIPALVMTWILSHIERGVDRITPAVTKNFLKPMLIVLIAAPIAIVLIGPIGIWIGSGISALVYT----IHGYLG 289
                 **99...8*********************************************************************************....9***** PP

    PTS_EIIC 201 llgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflfG 299
                 +l+v+i+g+l++ll+++G+H +f++++++t+a  +  +            ++++ +e + +++++ g  la+++   ++k+++ ++++++aa+ +++ G
  EHT98186.1 290 WLSVAIMGGLWPLLVMTGMHRVFTPTIIQTIA-ETGKE------------GMVMPSE-IGANLSLGGSSLAVAF---KTKNRELRQTALAAAASAIVAG 371
                 *******************************9.22222............3333333.2478888887777766...********************** PP

    PTS_EIIC 300 ItepleFgfpfvlnlllfipallag 324
                 I+ep+++g+ ++l+++ +i++l++g
  EHT98186.1 372 ISEPALYGVAVRLKRP-LIASLMSG 395
                 ****************.99998876 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.2   3.6e-18   3.2e-14       1      34 []      10      43 ..      10      43 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 3.6e-18
                HHHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  1 keIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                ++I+ alGG +NI+ +thC+TRLR+++kD++ vd
  EHT98186.1 10 QAIVTALGGLNNISAITHCMTRLRFVVKDDDSVD 43
                58****************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3355.03
//
Query:       EHT98187.1  [L=476]
Description: cryptic 6-phospho-beta-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.4e-132  440.7   0.0   5.2e-132  440.5   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
  ------ inclusion threshold ------
       0.03   13.8   0.0      0.054   12.9   0.0    1.4  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.5   0.0  5.8e-136  5.2e-132       3     452 ..       4     472 ..       2     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 440.5 bits;  conditional E-value: 5.8e-136
                    GGS-TT-EEEEE--HHHHH--TTSTT---BHHH...........HHHHHGGGSTTS--...-SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHH CS
  Glyco_hydro_1   3 etfpedFlwgaataayqiEGawnedGkgesiwD...........tftetpgkvlegsn...gdvacdsYhrykeDvallkelgvkayrfSisWpRi 84 
                    + fpe+Flwg+a +a+q EGa+ e+Gkg+++ D           +  +++  +l ++    +  a+d+Yhry+eD+al++e+g++++r Si+W+R+
     EHT98187.1   4 SVFPEGFLWGGALSANQSEGAFLEGGKGLTTVDmlplgparmpvKLGQEKRVTLRDDEfypSHTAIDFYHRYREDIALMAEMGFTVFRTSIAWSRL 99 
                    68*******************************999999988876666655555544445699********************************* PP

                    STTS.TT---HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS. CS
  Glyco_hydro_1  85 lPkG.egeinekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltg. 177
                    +P+G e ++ne+Gla+Y+ L++e+  +gieplvTl H+d+P  L   +G w+ r++i  f +ya+ +f+ f   vk+wlTfnE+n++ + ++  + 
     EHT98187.1 100 FPRGdELTPNEQGLAFYRDLFAECRRYGIEPLVTLCHFDVPMHLVTeYGSWRHRKMIAFFARYARSCFEAFDGLVKYWLTFNEINIMLHSPFSGAg 195
                    ****999***********************************99877*******************************************998653 PP

                    .-STT-S-TTTHHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG.. CS
  Glyco_hydro_1 178 .efaPgkkdleaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrerga 271
                     +f Pg++  +  y+aaH+ l+a+a + k  +ev++  ++g +l+    +p s++++d+ +a ++ +e  n +f+d++ +G+Yp++  +l+re+g+
     EHT98187.1 196 lVFEPGENTEQVKYQAAHHELVASALVTKIAHEVNPANQVGCMLAGGNFYPWSSKPDDVwAALQKDRE--NLFFIDVQARGAYPAYSARLFREKGI 289
                    479********************************************************666665555..56************************ PP

                    S----HHHHHHHTT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE- CS
  Glyco_hydro_1 272 lpeiteedkellkgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakd 367
                    +  + e+d e+lk+++df++++yY sr+++++       ++++ + +++ ++p++ ++++gw i+p glr  +++++++Yq +p++++eNGlga+d
     EHT98187.1 290 EIVMAEDDAEILKNTVDFVSFSYYASRCASADM---HDQNSSAANVVKSLTNPHIARSEWGWGIDPLGLRITMNMMYDRYQ-KPLFLVENGLGARD 381
                    *****************************9999...6667777888899999*****************************.9************* PP

                    BSSS.HHH--HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 368 eiee.gkveDdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                    e++  g++ Dd+Ri+Yl+eh+ ++++ai dg+ + gY++w+ +D++ +++g +skr+G+vyvdr    n tleR++kkS+ wyk+vi++ng
     EHT98187.1 382 ELTPeGEIIDDYRISYLREHIRAMADAIGDGIPVLGYTTWGCIDLVAASTGeMSKRYGFVYVDRddhgNGTLERRRKKSFWWYKKVIASNG 472
                    *9867***********************************************************999999*****************9997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     6e-06     0.054      24      80 ..      76     132 ..      61     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-06
                 HHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEE CS
   Cellulase  24 kalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvil 80 
                  + i++++++gf+++R  ++w +l++ +++++ +e+ l+ + ++ + + + g+  ++
  EHT98187.1  76 REDIALMAEMGFTVFRTSIAWSRLFPRGDELTPNEQGLAFYRDLFAECRRYGIEPLV 132
                 577899******************************999999999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3413.90
//
Query:       EHT98188.1  [L=79]
Description: hypothetical protein CKS_3101 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 628.00
//
Query:       EHT98189.1  [L=256]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-48  164.0   0.1    3.4e-48  163.6   0.1    1.1  1  DeoRC      DeoR C terminal sensor domain
    2.5e-14   52.7   0.1    4.8e-14   51.8   0.1    1.4  1  HTH_DeoR   DeoR-like helix-turn-helix domain
     0.0025   17.4   0.0     0.0052   16.4   0.0    1.5  1  GntR       Bacterial regulatory proteins, gntR family
     0.0054   16.6   0.0      0.011   15.5   0.0    1.5  1  HTH_5      Bacterial regulatory protein, arsR family
     0.0056   16.8   0.3      0.023   14.8   0.0    2.1  3  DprA_WH    DprA winged helix domain
  ------ inclusion threshold ------
      0.025   14.5   0.1      0.074   13.0   0.0    1.8  2  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.063   12.4   0.0      0.093   11.9   0.0    1.2  1  DUF1338    Domain of unknown function (DUF1338)
      0.074   13.0   0.0       0.15   12.0   0.0    1.6  1  HTH_11     HTH domain
      0.077   13.0   0.0       0.13   12.3   0.0    1.4  1  HTH_29     Winged helix-turn helix
      0.082   11.5   0.0       0.12   10.9   0.0    1.2  1  DUF853     Bacterial protein of unknown function (DUF853)
       0.11   12.3   0.0        1.4    8.8   0.0    2.4  2  UBA_4      UBA-like domain
       0.12   12.7   0.0       0.29   11.5   0.0    1.6  1  Rrf2       Transcriptional regulator


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.1   2.3e-51   3.4e-48       2     159 ..      75     231 ..      74     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 2.3e-51
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 n+ eK +IA+ Aa++i+ gd+++ldaGtT++elar++ +  +l+v+Tn+l++a  Lse ++i+v ++GG+++++s+s++g +  ++l+++n d+afl+ 
  EHT98189.1  75 NQPEKHAIARVAATFIKAGDAVILDAGTTMFELARQITHM-PLRVITNDLHIALFLSEFKQIEVTIIGGRIDESSQSCIGDHGRKMLNNINPDIAFLSG 172
                 788************************************9.********************************************************** PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 ng+d  +g+t ++ee+a++k+ li +arr +llaDssK+g  +++++++l++++ ++tD
  EHT98189.1 173 NGWDMTKGVTSPTEEKAALKHDLIINARRRVLLADSSKYGAWSLFNVVHLDALTDIVTD 231
                 **********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   3.2e-17   4.8e-14       1      54 [.       6      59 ..       6      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 3.2e-17
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsi 54
                R+e  + +lk    ++ve+lv   g S+aTiRRDL +L+++g++ RthGG++++
  EHT98189.1  6 RLESVMNYLKGNNLVTVEQLVSVTGASPATIRRDLIKLDQEGVVSRTHGGVTLN 59
                889999*********************************************987 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06    0.0052      21      60 ..      16      55 ..      11      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.5e-06
                TSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR 21 GdkLPsereLaaefgVsrttvReALrrLeaeglverrqgr 60
                G  L ++++L++  g s  t+R+ L++L +eg+v r +g+
  EHT98189.1 16 GNNLVTVEQLVSVTGASPATIRRDLIKLDQEGVVSRTHGG 55
                5556699******************************997 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.7e-06     0.011       7      46 ..      10      50 ..       6      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.7e-06
                HHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  7 ILklLaege.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                ++++L  ++  +v +l+  +g s++t+++ L kL ++G+V+
  EHT98189.1 10 VMNYLKGNNlVTVEQLVSVTGASPATIRRDLIKLDQEGVVS 50
                68889995548****************************97 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05     0.023      22      61 .]      16      55 ..       5      55 .. 0.90
   2 ?   -2.3   0.0       3.3   4.9e+03      48      59 ..     104     115 ..      94     115 .. 0.70
   3 ?   -2.8   0.1       4.7     7e+03      30      41 ..     227     238 ..     219     244 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
     DprA_WH 22 gpePvhvDqLvrrtglpaaevsaaLleLELaGlverlpGg 61
                g+  v+v+qLv  tg+++a++ + L+ L  +G v r  Gg
  EHT98189.1 16 GNNLVTVEQLVSVTGASPATIRRDLIKLDQEGVVSRTHGG 55
                56779********************************998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.3
     DprA_WH  48 eLELaGlverlp 59 
                 + ELa ++++ p
  EHT98189.1 104 MFELARQITHMP 115
                 457888887766 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.7
     DprA_WH  30 qLvrrtglpaae 41 
                 ++v ++ l+a++
  EHT98189.1 227 DIVTDANLDADV 238
                 455666666654 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     5e-05     0.074      22      59 ..      20      58 ..      10      61 .. 0.86
   2 ?   -3.5   0.0       7.2   1.1e+04      45      60 ..     191     206 ..     189     208 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5e-05
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEE.EEE CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisrgrr.iri 59
                +t e+l s  G+++ t+ r l +L +eg++sr ++ +++
  EHT98189.1 20 VTVEQLVSVTGASPATIRRDLIKLDQEGVVSRTHGgVTL 58
                6889999************************64333776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.2
                 HHHTTSEE.ETEEEEES CS
   HTH_Crp_2  45 Lkreglis.rgrriril 60 
                 Lk + +i  r+r + + 
  EHT98189.1 191 LKHDLIINaRRR-VLLA 206
                 666667774454.7665 PP

>> DUF1338  Domain of unknown function (DUF1338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.2e-05     0.093      93     217 ..      99     231 ..      94     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.2e-05
     DUF1338  93 pahwtaFrppeedlaknlpRvFiSeLrvedlsdaaqraieayvl.....aareiftkrllellekleedggltag...daeafvaealetf.rwqkeap 182
                 +a  t+F+    + ++ + Rv +  L++ ++ ++++++  + ++     ++++ + ++  ++l++++ d ++ +g   d +++v++ +e   +++++  
  EHT98189.1  99 DAGTTMFELA-RQITHMPLRVITNDLHIALFLSEFKQIEVTIIGgrideSSQSCIGDHGRKMLNNINPDIAFLSGngwDMTKGVTSPTEEKaALKHDLI 196
                 5666777777.7889999999999999999999999999888885555555555566666777777777666666677888888887776657888888 PP

     DUF1338 183 vakadyelLaaeseyaAwvlvngyaiNHlTprvld 217
                 ++     lLa+ s+y Aw l+n  ++  lT+ v d
  EHT98189.1 197 INARRRVLLADSSKYGAWSLFNVVHLDALTDIVTD 231
                 9999999***********************99994 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.15       1      44 [.       6      48 ..       6      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                Rl++++  L + ++ ++ e+L   ++ S +t+rrd+ +L   gv
  EHT98189.1  6 RLESVMNYL-KGNNLVTVEQLVSVTGASPATIRRDLIKLDQEGV 48
                677788888.66666*********************99999883 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-05      0.13       3      41 ..       8      48 ..       6      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-05
      HTH_29  3 qallllaeGvs..tvsqiAkllglsrrtvyrwlkrfeegGl 41
                + ++++ +G    tv q++ ++g s+ t++r l   +++G+
  EHT98189.1  8 ESVMNYLKGNNlvTVEQLVSVTGASPATIRRDLIKLDQEGV 48
                5577888888888******************9999999994 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.2e-05      0.12     152     193 ..       7      48 ..       3      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.2e-05
      DUF853 152 LrallkevadnakelskqygnvskasvgaiqreLltLeqqGa 193
                 L++++++++ n   + +q+  v+ as  +i+r+L++L+q+G 
  EHT98189.1   7 LESVMNYLKGNNLVTVEQLVSVTGASPATIRRDLIKLDQEGV 48 
                 7899************************************95 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00091       1.4       4      20 ..      22      38 ..      21      40 .. 0.91
   2 ?    0.2   0.0      0.45   6.8e+02      20      29 ..     168     177 ..     167     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00091
       UBA_4  4 iaqFqaiTGadeekArq 20
                ++q++++TGa+++++r+
  EHT98189.1 22 VEQLVSVTGASPATIRR 38
                79***********9986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.45
       UBA_4  20 qlLeannWdL 29 
                  +L  n+Wd+
  EHT98189.1 168 AFLSGNGWDM 177
                 699******7 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.29      21      67 ..      15      58 ..       7      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEE CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrL 67
                ++++ v++e++ + ++ sp  +++ l kL ++g+v  + G   G++L
  EHT98189.1 15 KGNNLVTVEQLVSVTGASPATIRRDLIKLDQEGVVSRTHG---GVTL 58
                56677******************************98754...5655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2169.91
//
Query:       EHT98190.1  [L=236]
Description: hypothetical protein CKS_3097 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-36  124.1   0.1    1.4e-35  122.9   0.1    1.5  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.1   7.9e-40   1.4e-35      16     237 ..       9     218 ..       7     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 7.9e-40
                 EEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHH.HHHHHHHHHHHHHHHCHTT--EEEEEE--C.HHCC-CCHHHHHHHHHHC CS
         EAL  16 yyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeld.rwvleqalqdlrrlaeqldadiklsinlsp.asladeefleelrellkq 112
                  ++Pvvd   ++v+++ea +  + ++ +   +++  + + +++l a ++   +  +a+          + ++ l + l p + +  +++++++ +++++
  EHT98190.1   9 TFRPVVDPLARQVTAIEAIADARLRRTE---QRDSSKQLHDADLDAVITaFRMAGRAC----------PDEMTLYVSLLPmTLVVVPDAVQTIVAAINA 94 
                 699****************999999886...444445555534444444333333333..........678899******89999999*********99 PP

                 CT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT-EEEE- CS
         EAL 113 sgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgikvvae 211
                 +g+ p+++v+ ++e+e+++r ea +  ++++L+a+Gi++++d+fg+g + ls+l++++pd+i++d+s+++d+++++ +qa+v+a+i+++++l+i+v+a 
  EHT98190.1  95 AGLVPEQVVIGVSETEVISRVEAFS-VAVRELKAAGISLSVDNFGAGSAGLSLLTHIQPDRIRIDSSITSDVHRSGPKQAVVQAIIKCCSALEITVIAA 192
                 9999999*****************9.************************************************************************* PP

                 S--SHHHHHHHHHHT-SEE-STTT-- CS
         EAL 212 gVeteeqlealrelgcdlvQGyllsk 237
                 g+   e++++l+++g+  +QG l+++
  EHT98190.1 193 GIVKAEEWMWLEAAGVINFQGSLFAP 218
                 ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1898.41
//
Query:       EHT98191.1  [L=134]
Description: hypothetical protein CKS_3095 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-20   71.7   0.0    6.3e-20   71.1   0.0    1.3  1  BLUF      Sensors of blue-light using FAD


Domain annotation for each model (and alignments):
>> BLUF  Sensors of blue-light using FAD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   3.5e-24   6.3e-20      24      91 ..       3      70 ..       1      71 [. 0.95

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 3.5e-24
                HHHHHHHHHHTEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHT-TTEEEEEEEEEEEESS-SSTTCSS CS
        BLUF 24 eesrenNkelgitGvLlydegvflQvLEGeeeaveelyerIkkDpRhkdvevleeeeieersFskwsm 91
                ++++  N+++++tG+Ll+++++f+Q+LEG+ee v ++y+rI++D+Rh++++ l+++ + +r+F +  m
  EHT98191.1  3 DDASILNASHDVTGILLFNGTHFFQLLEGPEEGVLAIYQRICADRRHHNLVELMRDYAPSRRFGNAGM 70
                677889**********************************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1012.73
//
Query:       EHT98192.1  [L=315]
Description: GAF domain/GGDEF domain/EAL domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-11   44.5   0.0    4.3e-11   43.3   0.0    1.7  1  GAF_2     GAF domain
    7.1e-11   42.9   0.1    1.7e-10   41.6   0.1    1.6  2  GAF       GAF domain
    1.6e-08   34.9   0.0    3.5e-08   33.9   0.0    1.6  1  GAF_3     GAF domain
     0.0018   18.1   0.1     0.0026   17.5   0.1    1.3  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   9.6e-15   4.3e-11       3     137 ..      25     157 ..      23     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 9.6e-15
                 HHHHHHHHHHHHHHHS.S..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TT.HHHHHHHHTS-EEES-GGG-S-HHHHH.HHHHTT--E.EEEE CS
       GAF_2   3 dleelldlvldelvel.gaalgyillvdddgglrlaawgeaeeefgaaldrplgeg.lvgealrtgrpvilndleedpdkkglp.aghaglrsf.lavP 97 
                   +e+l+  l+ +++l g+  +yi++++dd++   ++++++  e+++ +    +e  l+ +++++   vi  d++ dp+  ++p   ha++ +f ++ P
  EHT98192.1  25 GRDEVLKKFLRLACQLvGINGSYIAVLNDDKH---SVRANYNIELSDTT----REQaLCRHVVESDATVIAPDTRLDPRYAHHPlIVHAPYIRFyVGTP 116
                 579************88*********998887...56777777777777....4444***************************98999999999**** PP

                 E-T.TS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  98 lis.egrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 l    g+++G l+l  + p++f+ ++ +++e+la+++   +
  EHT98192.1 117 LKNaHGQILGTLCLTDTVPRTFSHQQKQIIESLAGLVVAFL 157
                 *9989*********8888888*************9986655 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   3.8e-14   1.7e-10       2     129 ..      26     153 ..      25     156 .. 0.80
   2 ?   -2.4   0.0       1.6     7e+03      42      42 ..     232     232 ..     176     274 .. 0.61

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.8e-14
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC....EEEET...TSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEE CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhydipqasrw....lfmkn...grgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvv 93 
                 ++e+l++ ++ +++l+g     +     d+ h      +++    +   +    + +c +v++++ +++ pd++ dpr+a+  ++ +++++ ir +++ 
  EHT98192.1  26 RDEVLKKFLRLACQLVGINGSYIAV-LNDDKHS---VRANYnielS---DttrEQALCRHVVESDATVIAPDTRLDPRYAH--HPLIVHAPYIRFYVGT 115
                 5899999999999999998877744.1222232...3333333322...2234666999**********************..**************** PP

                 EEEE.TTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHH CS
         GAF  94 Plvn.dgelwGllvlhnpsp.pftreelellqvladqv 129
                 Pl+n +g+++G+l+l+++ p  f+ ++ +++++la +v
  EHT98192.1 116 PLKNaHGQILGTLCLTDTVPrTFSHQQKQIIESLAGLV 153
                 ***99************55555**********999765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
                 C CS
         GAF  42 w 42 
                  
  EHT98192.1 232 L 232
                 1 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   7.8e-12   3.5e-08       3     128 ..      27     158 ..      26     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 7.8e-12
       GAF_3   3 dellekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedglpd......raa....lavPLvag 91 
                 de+l k l+l+++l+g + + + +l++d  k  v+a++  +  ls   ++++al+r +++s+  v++p+ +  +++        +++    +  PL+  
  EHT98192.1  27 DEVLKKFLRLACQLVGINGSYIAVLNDD--KHSVRANY--NIELS-DTTREQALCRHVVESDATVIAPDTRLDPRYAHhplivhAPYirfyVGTPLKNA 120
                 7999**********************99..99999999..88887.66789****************77766655333112333222454266*****9 PP

       GAF_3  92 r.qviGvlalastkprafdaedlelleslArqiataie 128
                 + q +G+l+l  t pr f+ ++++ +eslA++++  +e
  EHT98192.1 121 HgQILGTLCLTDTVPRTFSHQQKQIIESLAGLVVAFLE 158
                 9******************************9988777 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   5.8e-07    0.0026       3     119 ..     166     285 ..     164     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.8e-07
                 B-CCCGSEEHHHHHHHHHHHHHCC.HHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T..TSEEEEESSSEEEEEEECSSHHHHHH CS
       GGDEF   3 hDslTgLpNRrlleeeleqelqra.rreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk..sdlvaRlggdeFaillpetsseeaae 98 
                 + ++Tg++NR  l + + ++     +   + + + ++d+ +  ++  ++G ++ + +L+ va+ L+  lr+  ++ ++ +   +Fail    s+ +a+ 
  EHT98192.1 166 IEPVTGMANRERLFRDILHLATLNdTALRRLVLIDCIDMSRAYDLSRSLGMASLESLLKDVATLLRLRLRPasGESIYTIATGRFAILTRAESHVSAKW 264
                 6689******88877776666666355455666669**********************************99999*************99999999999 PP

                 HHHHHHHHHHCS-EEETTCCE CS
       GGDEF  99 laerirrllaklkepvelsge 119
                 ++er++ ++a++ + ++++  
  EHT98192.1 265 VEERLNGIHADMGDGLTMALA 285
                 999999999998887765533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2442.83
//
Query:       EHT98193.1  [L=250]
Description: diguanylate cyclase/phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-36  125.0   0.0    3.9e-36  124.8   0.0    1.0  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   2.2e-40   3.9e-36       2     210 ..       2     209 ..       1     211 [. 0.93

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 2.2e-40
                 HHHHHHC.CTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC CS
         EAL   2 ealreal.enkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspasla 98 
                 ++l +al +n+ l+l++QP v l +gk vglea +rw+hp++g ++++ f +la  + l+  l+ w++++++++l+rl+ +  + ++++ i + +++++
  EHT98193.1   2 RDLADALrRNQGLYLVFQPNVCLLSGKPVGLEAQIRWHHPQRGELAADNFTSLAVGTELGTTLTTWLIDSTIARLKRLRnH--PIQLPVTISIHERDVT 98 
                 789999967779*******999*******************************************************9744..777777999999**** PP

                 -CCHHHHHHHHH.HCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHH CS
         EAL  99 deefleelrell.kqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvka 196
                 d+ f+e+l+e + k++ p +  Lv+ i+++e + +  ++    l++Lr++G+ ++ + +  gy  + yl+ +ppd+iKld+ l ++++ +  ++ ++ +
  EHT98193.1  99 DRAFAEKLAEKMlKATLPVSM-LVIKIVQKEHIIDSPSAM-LGLEMLRRMGFTMTWEYIAKGYRKIRYLRGMPPDVIKLDKTLANQIHANITSRLIAHS 195
                 *********888688877777.********8877777777.7999****************************************************** PP

                 CHHHHCCCT-EEEE CS
         EAL 197 lialakelgikvva 210
                 + ++ kel++ v+a
  EHT98193.1 196 IFTTLKELNLLVLA 209
                 ***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1876.11
//
Query:       EHT98194.1  [L=223]
Description: hypothetical protein CKS_3091 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1757.46
//
Query:       EHT98195.1  [L=143]
Description: hypothetical protein CKS_3090 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-41  139.9   0.1    8.5e-41  139.8   0.1    1.0  1  GrpB      GrpB protein


Domain annotation for each model (and alignments):
>> GrpB  GrpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.1   4.7e-45   8.5e-41      26     160 .]       5     136 ..       1     136 [. 0.94

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 4.7e-45
                 HEEEEEESGGGSTT--B-S-EEEEEEES-SGGGGGGHHHHHHTT-EE.-TTTTSTTEEEEEE-SSS..--EEEEEEETT-HHHHHHHHHHHHHHH-HHH CS
        GrpB  26 lisieHiGSTsvpglaAKpiiDilvvvedledeeelveaLeaagyellrgepgiperrlfvkgedeeertvhlhvveagspelerhllfrdyLrahpea 124
                 l++i+HiGST+vpglaAKpiiDil++v   +d +++++aL a gy++ rge+g+ +rr+++kg +  +rt+h+h + +gsp++ rhl+frdyLr+ p+ 
  EHT98195.1   5 LVAIHHIGSTAVPGLAAKPIIDILLEVIT-HDSSDITSALCASGYQA-RGENGMSGRRYYTKGLQG-RRTHHVHAFIQGSPDIIRHLAFRDYLRKYPDI 100
                 358*************************5.666689**********9.9*************9666.79****************************** PP

                 HHHHHHHHHHHHTT-SS-HHHH----HHHHHHHHHH CS
        GrpB 125 raeYaalKrelaakaeedidaYteaKeefikeilkr 160
                 r+ Yaa+K ++ ++++ + + Y+e K++f++ +++r
  EHT98195.1 101 RDSYAAVKYAAQRDCRGESNVYCELKNAFVQTHQQR 136
                 *******************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1294.83
//
Query:       EHT98196.1  [L=290]
Description: 23S rRNA pseudouridine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-15   57.6   0.1    2.2e-14   53.9   0.1    2.2  1  PseudoU_synth_2  RNA pseudouridylate synthase
      8e-10   38.3   1.8      2e-09   37.0   0.1    2.5  3  S4               S4 domain
     0.0027   17.5   0.9     0.0057   16.5   0.1    2.0  2  S4_2             S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   3.7e-18   2.2e-14       2     160 .]      69     195 ..      68     195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3.7e-18
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      l+++nKP g++++ e+        +  ++ s+  +++k++ +++RLDk+++Gl+ l++ ++++nk  +  + ++++K+Y+++v+          
       EHT98196.1  69 LIALNKPTGIITTMEE--------GERDNISDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNNHEKEYVVTVD---------- 142
                      699*************........999999999***********************************..99***********6.......... PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                       k           +  +++  +    v  l ++ ++++ k+++ ++ +++l++G ++QiR+++++
       EHT98196.1 143 -K-----------PVTDEFIAGMAAGVPMLGTVTKKCKVKKEAPYVFRITLVQGLNRQIRRMCKH 195
                      .3...........4445888899999999999999999999*********************986 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   3.4e-13     2e-09       2      48 .]       8      52 ..       7      52 .. 0.95
   2 ?    0.8   0.0     0.069   4.1e+02      28      38 ..      52      61 ..      51      64 .. 0.85
   3 ?   -2.9   0.1      0.95   5.7e+03      17      25 ..     187     195 ..     187     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3.4e-13
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                RL k+++++g++s rr A ++Ie+G V +NGk++   + +V +gDv+
  EHT98196.1  8 RLNKYISESGICS-RRDADRFIEQGNVFINGKRAA-VGAQVFAGDVV 52
                ************9.********************9.99999999987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.069
                EEETTEEE--T CS
          S4 28 VlVNGkvvkdp 38
                V+VNG+ +  p
  EHT98196.1 52 VKVNGQLIE-P 61
                9*****987.6 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.95
                 HHHHHHHHT CS
          S4  17 reArqlIeh 25 
                 r++r++++h
  EHT98196.1 187 RQIRRMCKH 195
                 799***998 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.5e-07    0.0057      26      62 ..      24      59 ..       4      60 .. 0.87
   2 ?   -2.3   0.1      0.69   4.1e+03       4      14 ..     226     236 ..     224     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.5e-07
        S4_2 26 aKafiaegeVkvNGevetrRgkKlraGdvVeidgeti 62
                a  fi++g+V++NG+     g+++ aGdvV+++g+ i
  EHT98196.1 24 ADRFIEQGNVFINGKRAA-VGAQVFAGDVVKVNGQLI 59
                6689**********9876.5*************9976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.69
        S4_2   4 rdeyItLgqlL 14 
                 +de I+L +lL
  EHT98196.1 226 DDELIELFKLL 236
                 5799***9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2341.86
//
Query:       EHT98197.1  [L=376]
Description: outer membrane esterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-39  135.1  16.9    4.4e-39  134.7  16.9    1.1  1  Autotransporter  Autotransporter beta-domain
      0.001   19.3   8.7      0.021   14.9   2.5    2.8  3  OMP_b-brl        Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> Autotransporter  Autotransporter beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7  16.9   4.9e-43   4.4e-39       2     254 ..     108     354 ..     106     355 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 4.9e-43
                      EEEEEEEEEEEE-BTTB--EEEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEE. CS
  Autotransporter   2 WarglggrgkqdgtdgaagydadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyqgagglyldgvagygwydn. 94 
                      ++ + g++++ +++d  ++ d+dt ++++G+ y+l+dnl +G+ ++ ++++ +  + + + +++g  ++l  + q  + l++++ + y+ +d+ 
       EHT98197.1 108 FGGYAGQHAR-NKSDVFNDGDTDTANLSAGMGYQLTDNLQAGALLSTASQRQH-PSERYDYRLHGNMVALWSQLQLIDRLWVNADIHYADLDYd 199
                      6667778887.99999*************************************.8*************************************** PP

                      EEEEECEETTCCEEEEEEEEEEEEEEEEEEEE-CECCGCEEEEEEEEEEEEEEEEEEEE-SS..TTSEEEEEEEEEEEEEEEEEEEEEECCCTT CS
  Autotransporter  95 dtrrsvdlgglsdtakgdydgnglsasleaGydfklsggwtlePqaqltysrlkldgftesg.gaaaltvdsqdadsltgrlGlrlsydfdlgg 187
                      +++r++ lg + +t +g+ +g+ ++ ++++G+df+l++ +t +P ++++  +++ dg++e g ++ a+++++q+ +s+tg +G+r++++     
       EHT98197.1 200 SIERQIKLGPAVRTEQGSSSGKLMGTRVQTGWDFPLNETITTGPVVSYALDYVRADGYQERGdSSSAMRFSDQTRHSQTGAVGWRIDTQGL--- 290
                      ******************************************************************************************9... PP

                      ECEEEEEEEEEEEECEE---EEEEEETTECCEEEE-------BCEEEEEEEEEEEEECTTEEEEEEE CS
  Autotransporter 188 gkltpylraawqhefgddgktstasfagastagsftvfgaelgrdslelgaGleaqlsdnlslylny 254
                        ++p+++++++h+fgd++++++a++++  t ++f + ++++++d++++ +G+++ ++d +s ++ +
       EHT98197.1 291 -GINPWAQVSYNHQFGDTDTSVSAGLKS--TRTAFRQSRSNQDKDWADIAVGANVPIGDAVSAFAAV 354
                      .8***********************655..5556889999**********************99876 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.5   2.4e-06     0.021      19     148 ..     102     241 ..      90     258 .. 0.74
   2 !    7.5   0.4   0.00045       4.1      58     154 ..     185     302 ..     170     308 .. 0.70
   3 !    5.9   1.4    0.0014        12      81     178 .]     271     376 .]     242     376 .] 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-06
   OMP_b-brl  19 fggfyvggglglskvkvdgv...gsd.sgfgfgvgagyefndnvgvegglsysgdkdysgsgktdikinllsvpvnagyafnlsdsvlpyggaGlgytk 113
                  g f v gg++  ++ ++ +   ++d ++ ++ +g gy+++dn+  ++ ls ++++ + ++    ++ +l   +v+++ +++l d+  + + a ++y++
  EHT98197.1 102 AGEFTVFGGYAGQHARNKSDvfnDGDtDTANLSAGMGYQLTDNLQAGALLSTASQRQHPSE---RYDYRLHGNMVALWSQLQLIDR--LWVNADIHYAD 195
                 366777777777766663222343331569**************99999998777776663...7888888899999999999996..77777777765 PP

   OMP_b-brl 114 vevdvsgng.............asdsdtdfglglgaGveyaladnwsl 148
                 +++d    +             +s+s++  g +++ G+ + l++ ++ 
  EHT98197.1 196 LDYDSI--ErqiklgpavrteqGSSSGKLMGTRVQTGWDFPLNETITT 241
                 555533..3336777788999999999999999999999999998876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00045
   OMP_b-brl  58 vgvegglsysgdkdysgs...........gktdikinllsvpvnagyafnlsds..vlpyggaGlgytkvevd.vsgng......asdsdtdfglglga 136
                 + v ++++y++ +++s +              + + +l   +v+ g++f+l+++   +p + + l+y+  + d ++  g        +++t+ + ++++
  EHT98197.1 185 LWVNADIHYADLDYDSIErqiklgpavrtEQGSSSGKLMGTRVQTGWDFPLNETitTGPVVSYALDYV--RADgYQERGdsssamRFSDQTRHSQTGAV 281
                 55777778877777777777887776655333445667779999**********88899999999964..33312222245666688889999999999 PP

   OMP_b-brl 137 Gveyalad...nwslkaeYry 154
                 G+++  ++   n + +++Y++
  EHT98197.1 282 GWRIDTQGlgiNPWAQVSYNH 302
                 988877766556666666665 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0014
   OMP_b-brl  81 kinllsvpvnagyafnlsds.vlpyggaGlg..ytkvevdvsgng........asdsdtdfgl.glgaGveyaladnwslkaeYrytdlksdadndlkn 167
                 +++  s ++++g+++++ +  ++p +++ ++  +++++++vs            s s+ d ++  +++G+++ ++d +s  a    ++     + d++ 
  EHT98197.1 271 DQTRHSQTGAVGWRIDTQGLgINPWAQVSYNhqFGDTDTSVSAGLkstrtafrQSRSNQDKDWaDIAVGANVPIGDAVSAFAAVSTVAG----ARDYHE 365
                 33344455666666666555566666666665544444444444466666666344444444415677888888888888777777666....577777 PP

   OMP_b-brl 168 ntfqvgvgyrF 178
                  t+++g + rF
  EHT98197.1 366 VTWNLGMSARF 376
                 77777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2757.99
//
Query:       EHT98198.1  [L=71]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-36  123.6   0.7    6.6e-36  123.5   0.7    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.7   3.7e-40   6.6e-36      61     131 .]       1      71 []       1      71 [] 0.99

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 3.7e-40
  DDE_Tnp_IS1  61 iltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  ++tsddwg+y re+ kdkhl++ki+tqriernnltlrtr+krlark+++fs+s+e+hekvig ++e++m++
   EHT98198.1   1 MITSDDWGSYAREVSKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSIEIHEKVIGAFIERHMFY 71 
                  789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 573.57
//
Query:       EHT98199.1  [L=33]
Description: hypothetical protein CKS_3084 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-18   65.3   1.0    2.8e-18   65.2   1.0    1.0  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.035   13.5   0.0    1.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.0   4.7e-22   2.8e-18      17      46 .]       1      30 [.       1      30 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.7e-22
  HTH_Tnp_IS1 17 mAfNGaGvraTARtlkvGiNTviRtLKnSr 46
                 mAfNGaGvr+TARtlk+GiNTviR LK+Sr
   EHT98199.1  1 MAFNGAGVRDTARTLKIGINTVIRALKSSR 30
                 9****************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06     0.035      28      49 ..       6      27 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  + v++ Ar l ++ +TV+r+l+
    EHT98199.1  6 AGVRDTARTLKIGINTVIRALK 27
                  5589****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      16      40 ..       4      28 ..       1      33 [] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkr 40
                +G+ vr+ Ar L +  +Tv r lk 
  EHT98199.1  4 NGAGVRDTARTLKIGINTVIRALKS 28
                58899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 312.26
//
Query:       EHT98200.1  [L=111]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 850.94
//
Query:       EHT98201.1  [L=82]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-21   74.6   0.0    5.1e-21   74.5   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   2.9e-25   5.1e-21      12      75 ..       1      65 [.       1      77 [. 0.93

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 2.9e-25
   TnpB_IS66 12 mRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpk.ee 75
                mR+g++gLa+ Vq++lk dp+sg++F+F +r+++++  L+  ++G++ll+krLe+grF+wp+ ++
  EHT98201.1  1 MRNGFNGLATKVQTTLKDDPMSGHVFIFPGRSGSQIIRLWSASDGLCLLAKRLERGRFAWPSvRD 65
                9************************************************************8433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 703.22
//
Query:       EHT98202.1  [L=38]
Description: hypothetical protein CKS_3079 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 346.98
//
Query:       EHT98203.1  [L=257]
Description: uncharacterized DUF1275 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-28  100.5  17.4    1.4e-28  100.1  17.4    1.0  1  DUF1275   Protein of unknown function (DUF1275)
  ------ inclusion threshold ------
       0.22   11.7   4.3         49    4.1   0.0    3.4  3  Ycf66_N   Ycf66 protein N-terminus
        1.8    7.9   5.7       0.54    9.7   1.0    2.1  2  GPI2      Phosphatidylinositol N-acetylglucosaminyltransferas


Domain annotation for each model (and alignments):
>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1  17.4   2.3e-32   1.4e-28       1     190 [.      17     227 ..      17     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 2.3e-32
     DUF1275   1 lllllafvaGllDavaflaaggvfvsaqTGNtvllglalaegnakaalaalvsllaFvlGaalagllarrggrrrrlvllle.....allllaaallvp 94 
                 l+l+la +aG+l+a+a+ +a+g+f s+++GNt +++ +++++++++++  +  ++aFv+G+  a+l+  +g rr+  +++++      ++l+ a+l+ +
  EHT98203.1  17 LALALATTAGILNAMAL-GAFGFFPSHMSGNTSQISTEVFTSDFDSLIFLAGLIMAFVVGCTSARLFIIAGERRKIRTVFCQiilaeGIALTSASLF-E 113
                 689**************.9********************99***999998888************99755544444444444222224444444444.3 PP

     DUF1275  95 agsvsp.........lalallafamGlqnalfsrlsgaeitttvlTgnltdlgidlarll....kkrk..larnrrla.........iilafllGavvG 169
                      +          +l++laf mGl na+ ++ls++ +++t++Tg+ltd+gi+l+ ++    +  +     +rr+a         ++++fl G+++G
  EHT98203.1 114 -----KmfyspeyngEVLLMLAFLMGLHNATSTQLSNGRVRSTHITGTLTDAGIALGTYVssfvS--RaeP-CDRRFAqkqlhthltTVFSFLSGCIAG 204
                 .....133344788768999***********666**************************55431..2331.445555555555555************ PP

     DUF1275 170 allvks..aaalwlaaallllva 190
                  +l+k   ++a+++ +++l+ +a
  EHT98203.1 205 LMLFKGygFNAMIALGIFLITLA 227
                 ******98777777777776654 PP

>> Ycf66_N  Ycf66 protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.014        86       2      23 ..      69      90 ..      68      93 .. 0.85
   2 ?    4.1   0.0    0.0083        49       1      25 [.      98     122 ..      98     147 .. 0.92
   3 ?    3.6   0.6     0.012        73      19      69 ..     182     232 ..     180     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.014
     Ycf66_N  2 llgivlalaslaLYflrffkPe 23
                ++++v++ +s+ L++++  + +
  EHT98203.1 69 IMAFVVGCTSARLFIIAGERRK 90
                99*************9876665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0083
     Ycf66_N   1 yllgivlalaslaLYflrffkPela 25 
                 ++l+  +al+s++L+   f  Pe++
  EHT98203.1  98 IILAEGIALTSASLFEKMFYSPEYN 122
                 69999*****************975 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.012
     Ycf66_N  19 ffkPelardeDiffsgvgLlygliLlfqawrldgilllgqlllvalliwfa 69 
                 f + +l+     +fs+++  +++++lf++  ++ +++lg +l++ ++ +++
  EHT98203.1 182 FAQKQLHTHLTTVFSFLSGCIAGLMLFKGYGFNAMIALGIFLITLATSAII 232
                 5566677777789999998999999999999********999987766554 PP

>> GPI2  Phosphatidylinositol N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.051     3e+02     243     268 ..      34      84 ..       4     124 .. 0.58
   2 ?    9.7   1.0     9e-05      0.54     210     273 ..     178     240 ..     147     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.051
        GPI2 243 k.........................lllavvlllllalimgvcpwwligl 268
                 +                           l++++ l++a+++g++++ l+ +
  EHT98203.1  34 GafgffpshmsgntsqistevftsdfDSLIFLAGLIMAFVVGCTSARLFII 84 
                 222333333334444444444444443445555555555555555544443 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 9e-05
        GPI2 210 vfrrslrhrswrlhvvltvllvllagagvgiilklllavvlllllalimgvcpwwliglqkykn 273
                 + rr   +++ ++h+++++ ++ +++ag++   ++ +  +++l ++li++ +++++i l++ k+
  EHT98203.1 178 CDRRF-AQKQLHTHLTTVFSFLSGCIAGLMLFKGYGFNAMIALGIFLITLATSAIIITLNNAKK 240
                 44444.456888899999999999999999999999999********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2285.05
//
Query:       EHT98204.1  [L=110]
Description: hypothetical protein CKS_3077 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 865.09
//
Query:       EHT98205.1  [L=123]
Description: endoribonuclease L-PSP [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-20   73.2   0.2    2.1e-20   72.9   0.2    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.2   1.2e-24   2.1e-20       8     120 ..      14     122 ..       8     123 .] 0.91

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 1.2e-24
                    SSS-BSEEEETTEEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEE CS
  Ribonuc_L-PSP   8 aapYsqavkagnlvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsav 102
                    +apY++av +++++yvsG ++      + + + d+++q+++++++l+ + +a ++sl++ +kvt F+++ +d  ++++v+ + + +    Pa+s+v
     EHT98205.1  14 TAPYVHAVSHNGTLYVSGLTAHG----TTAsQRDIAAQAEAIFDQLEVIASAEQTSLENLIKVTLFITSFTDIDALRKVLFKRYGTA--LPASSLV 103
                    689***************77743....44449*******************************************999999888888..5****** PP

                    E-SBSG.GG-SEEEEEEEE CS
  Ribonuc_L-PSP 103 eVaaLp.kgakvEIeaiav 120
                    +V+aL  +++++EIeai++
     EHT98205.1 104 QVNALFaPELLIEIEAIIA 122
                    *****99*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1041.85
//
Query:       EHT98206.1  [L=53]
Description: hypothetical protein CKS_3075 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.7   0.0       0.18   11.6   0.0    1.0  1  DUF835    Protein of unknown function (DUF835)


Domain annotation for each model (and alignments):
>> DUF835  Protein of unknown function (DUF835)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.8e-06      0.18      11      52 ..       5      44 ..       2      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-06
      DUF835 11 ilsdlvkegvkvlaitRenpkkirekvkienvkviwltkvee 52
                il++  ++   +la++ + p+ ++ k+++e +k+iwlt+ +e
  EHT98206.1  5 ILTQARNR-IHGLAFSVR-PERLMTKFQPEIAKLIWLTDYSE 44
                66666664.899999987.689999*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 460.94
//
Query:       EHT98207.1  [L=49]
Description: hypothetical protein CKS_3074 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       156  (0.00870099); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 436.23
//
Query:       EHT98208.1  [L=323]
Description: ParB family chromosome/plasmid partitioning protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-46  156.2   2.2    9.5e-46  155.4   2.2    1.5  1  ParB           ParB family
    2.3e-06   27.8   0.3    7.2e-06   26.2   0.1    1.9  2  ParBc          ParB-like nuclease domain
    0.00018   21.0   1.7    0.00036   20.0   0.1    2.3  2  HTH_24         Winged helix-turn-helix DNA-binding
     0.0012   19.2   0.8     0.0031   17.8   0.8    1.7  1  HTH_31         Helix-turn-helix domain
     0.0012   18.9   0.1     0.0038   17.3   0.1    1.8  1  Trp_repressor  Trp repressor protein
     0.0073   16.4   0.0      0.021   14.9   0.0    1.8  1  SoPB_HTH       Centromere-binding protein HTH domain
     0.0082   15.8   0.1      0.023   14.4   0.1    1.7  1  Sigma70_r4_2   Sigma-70, region 4
  ------ inclusion threshold ------
      0.017   14.9   0.3      0.061   13.1   0.0    2.0  2  HTH_23         Homeodomain-like domain
      0.023   14.5   0.1      0.059   13.2   0.1    1.7  1  HTH_IclR       IclR helix-turn-helix domain
      0.032   14.1   0.1      0.081   12.8   0.1    1.7  1  MarR_2         MarR family
      0.052   13.6   0.0       0.21   11.6   0.0    2.0  1  HTH_29         Winged helix-turn helix
      0.099   12.8   0.4        0.4   10.8   0.0    2.2  3  HTH_28         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   2.2   6.4e-49   9.5e-46       1     126 []     193     318 ..     193     318 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 6.4e-49
        ParB   1 FPvaseLtlaDYklLlkvaeklekkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaefedkkqfarkktkk 99 
                 FP++seLt++DYk+Ll++++kl+++++++++li+++++ei+ v+++++laede k++il+li++ s++l k+++kdk+++ +L++f+dk++farkkt++
  EHT98208.1 193 FPNQSELTYPDYKALLQASDKLSETGQSVDALINAISAEIDVVRARENLAEDELKNNILRLIRQGSQTLIKEPEKDKTTAIALWSFADKDRFARKKTRG 291
                 9************************************************************************************************** PP

        ParB 100 RlvsYefsrlskevqdelDkaIrevlk 126
                 R++sYef+r+ske+qdelDk+I e+lk
  EHT98208.1 292 RMFSYEFNRQSKELQDELDKVISETLK 318
                 ***********************9986 PP

>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   4.8e-09   7.2e-06      11      86 ..      62     133 ..      53     139 .. 0.75
   2 ?   -2.0   0.0       3.1   4.7e+03      20      32 ..     218     230 ..     206     253 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.8e-09
       ParBc  11 nplqprkdspekieelvasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlglkevpvivleiddeeamalsl 86 
                  ++q  ++ p+++++++++Ik + +  P+i    + +r+ei++G rR+ Aa   + + ++v+v ++    ++a +l
  EHT98208.1  62 GRDQSGLT-PDSLRDIIRTIKLQQF-FPAIGIMQD-ERIEILDGSRRRAAALHCK-TGLDVLVTDAAITSDEARKL 133
                 67777788.************5544.555555554.6*************99999.99999999887444444443 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
       ParBc  20 pekieelvasIkk 32 
                  +++++l+++I +
  EHT98208.1 218 GQSVDALINAISA 230
                 5667777777654 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.4e-07   0.00036      14      39 ..     156     181 ..     152     183 .. 0.91
   2 ?   -1.3   0.3       1.1   1.7e+03       2      14 ..     244     256 ..     243     264 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.4e-07
      HTH_24  14 knprisqreLAerlglSpstvnrrlk 39 
                 k++++sq+e+Ae  glS++ v+r l+
  EHT98208.1 156 KEGGLSQKEIAENQGLSQAKVTRALQ 181
                 78*********************997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
      HTH_24   2 detdrkILelLqk 14 
                 de++ +IL+l+++
  EHT98208.1 244 DELKNNILRLIRQ 256
                 7788899999987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.8   2.1e-06    0.0031      13      42 ..     144     186 ..     103     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
      HTH_31  13 a..............GLsqeevAerlgvsestlsrlEqGrrgrp 42 
                                GLsq+e Ae  g+s+++++r  q++  +p
  EHT98208.1 144 NlrevgmrllalkegGLSQKEIAENQGLSQAKVTRALQAAS-VP 186
                 3555555555566669***********************99.57 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.5e-06    0.0038      14      69 ..     125     179 ..     116     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
  Trp_repressor  14 eneeeleellelllTpdE..realaqRlqvvkeLLkeelsqreIaeelgvSiAtItRv 69 
                     +++e+ +l +++ T+ E  +  ++ Rl  +k   +++lsq+eIae+ g S A++tR 
     EHT98208.1 125 ITSDEARKLAQDIQTAREhnLREVGMRLLALK---EGGLSQKEIAENQGLSQAKVTRA 179
                    57889999999****99933456777776666...9*********************7 PP

>> SoPB_HTH  Centromere-binding protein HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.021      24      71 ..     164     211 ..     153     214 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
    SoPB_HTH  24 alaeaeklskkilskmlrvaklPdavvalFasPaelslksGdaLakal 71 
                  +ae + ls+  +++ l+ a +P   ++lF + +el     +aL +a 
  EHT98208.1 164 EIAENQGLSQAKVTRALQAASVPADLISLFPNQSELTYPDYKALLQAS 211
                 589*********************************999999999985 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.6e-05     0.023      23      50 ..     156     183 ..     151     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                   HTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2  23 yleglsykEIAellgisegtVksrlsRA 50 
                    + gls+kEIAe  g+s + V ++l+ A
    EHT98208.1 156 KEGGLSQKEIAENQGLSQAKVTRALQAA 183
                   689******************9999876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       6.7     1e+04       5      12 ..     104     111 ..     103     113 .. 0.63
   2 ?   13.1   0.0   4.1e-05     0.061      11      40 ..     152     182 ..     151     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.7
      HTH_23   5 reRlrill 12 
                 r+R+ +l+
  EHT98208.1 104 RRRAAALH 111
                 56776665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.1e-05
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 ll+l+e Gls++eIA+  g s+  v r l++
  EHT98208.1 152 LLALKEgGLSQKEIAENQGLSQAKVTRALQA 182
                 577888*********************9986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     4e-05     0.059       9      40 ..     150     181 ..     150     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4e-05
                 HCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR   9 LdalaeapqeltlselArrtglpkStvhRlLq 40 
                 +++la   ++l+ +e+A++ gl+ ++v R Lq
  EHT98208.1 150 MRLLALKEGGLSQKEIAENQGLSQAKVTRALQ 181
                 5899999**********************998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.4e-05     0.081      13      45 ..     154     183 ..     150     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.4e-05
                 HHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  13 aLgrrpgrdltvgelarrlglsksavsrilkrL 45 
                 aL  ++   l+++e+a+  gls++ v+r+l+ +
  EHT98208.1 154 ALKEGG---LSQKEIAENQGLSQAKVTRALQAA 183
                 554444...9*******************9875 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.21       5      34 ..     152     181 ..     150     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      HTH_29   5 llllaeGvstvsqiAkllglsrrtvyrwlk 34 
                 ll+l+eG+ + ++iA++ gls  +v r+l 
  EHT98208.1 152 LLALKEGGLSQKEIAENQGLSQAKVTRALQ 181
                 7999***99******************987 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         8   1.2e+04      23      34 ..      67      78 ..      66      78 .. 0.84
   2 ?   -3.5   0.1       8.3   1.2e+04      12      19 ..     102     109 ..      98     111 .. 0.50
   3 ?   10.8   0.0   0.00027       0.4       7      35 ..     153     182 ..     152     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8
      HTH_28 23 gisrrtvyrWik 34
                g++++++++ i+
  EHT98208.1 67 GLTPDSLRDIIR 78
                889999999886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.3
      HTH_28  12 GhsvreaA 19 
                 G ++r+aA
  EHT98208.1 102 GSRRRAAA 109
                 44444444 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00027
      HTH_28   7 kllaaGh.svreaArelgisrrtvyrWikr 35 
                 ++l++G+ s++e+A+  g+s+  v r +++
  EHT98208.1 153 LALKEGGlSQKEIAENQGLSQAKVTRALQA 182
                 67889999****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2510.62
//
Query:       EHT98209.1  [L=399]
Description: ParA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-43  144.9   1.6    9.6e-43  144.2   1.6    1.4  1  HTH_54           ParA helix turn helix domain
    8.2e-26   91.0   0.0    1.6e-25   90.0   0.0    1.4  1  AAA_31           AAA domain
    5.8e-07   29.6   0.0      1e-06   28.8   0.0    1.6  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    2.6e-06   26.9   0.9     0.0039   16.5   0.1    2.7  3  MipZ             ATPase MipZ
    0.00011   21.8   0.1    0.00061   19.3   0.1    2.0  1  CBP_BcsQ         Cellulose biosynthesis protein BcsQ
     0.0083   17.1   0.1      0.051   14.6   0.1    2.3  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
       0.04   13.2   0.1       0.43    9.8   0.0    2.2  2  VirC1            VirC1 protein
       0.15   11.5   0.0       0.42   10.0   0.0    1.8  1  ParA             NUBPL iron-transfer P-loop NTPase
       0.25   10.5   1.3        0.6    9.2   0.0    2.2  2  ArsA_ATPase      Anion-transporting ATPase


Domain annotation for each model (and alignments):
>> HTH_54  ParA helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   1.6   4.8e-46   9.6e-43       1      92 []      15     106 ..      15     106 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 4.8e-46
      HTH_54   1 aekmLqelteqiqkqkkElkedeyyqtyskaalaklpklsrrkvdkavsemeaeGyefekkeagstekYaltiqnvidlykhrgvPkyrdrh 92 
                 +e+mL +lteqiq+qk El+e++yyq y+kaalaklpkl+r++vd+av+eme++Gy+f+k++ags+ kYa++iqn+id+y+hrgvPkyrdrh
  EHT98209.1  15 SERMLLSLTEQIQAQKLELQENSYYQIYAKAALAKLPKLTRASVDYAVNEMEESGYQFDKRAAGSSVKYAMSIQNIIDIYHHRGVPKYRDRH 106
                 689****************************************************************************************8 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   8.2e-29   1.6e-25       6     155 ..     114     283 ..     111     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 8.2e-29
      AAA_31   6 ianqKGGvGKTTtsvnlaaalak......lgkkvLlvDlDpQanatt......glgiekneiektlyevlieeknikeaiiktkvenldlipssid... 89 
                 + n KGGv KT ++v la al        ++ ++L++DlDpQ++at+      ++g+ + ++ + +++ + +++ ++e i+++ +  +d++p+sid   
  EHT98209.1 114 VGNLKGGVSKTVSTVSLAHALRAhshllyEDLRILVIDLDPQSSATMflnherSVGLVEATAAQAMLQNVSRDELVNEFIVSSIIPGVDVLPASIDdaf 212
                 78****************99874122222589***************444444444444445555555556889999999999999*********9554 PP

      AAA_31  90 Laeaeielvelekk....eeil.kellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayale 155
                 +a+  +el  ++      +++l +++++k+k++YD+i+iD  P+L+ +++na++asd ++ pv + +   +
  EHT98209.1 213 IASSWDELCATHLPgqnvHSVLyDNVVSKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPPAQVDFH 283
                 445555665554446556555559**************************************998776554 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.2e-10     1e-06       2      44 ..     113     161 ..     112     365 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 5.2e-10
                 EEEESSTTSSHHHHHHHHHHHHHHT......T--EEEEEEEESSCCCCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx RF
        CbiA   2 aiastkGGvGKTtlaanLaralarr......glrVllvDaDpqannlai 44 
                 ++ + kGGv KT+ +++La al  +       lr+l++D+Dpq+++++ 
  EHT98209.1 113 FVGNLKGGVSKTVSTVSLAHALRAHshllyeDLRILVIDLDPQSSATMF 161
                 56789****************997633344468*************994 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.72   1.4e+03     138     178 ..      22      62 ..      18      68 .. 0.79
   2 !    8.0   0.0   0.00079       1.6       3      50 ..     112     164 ..     110     191 .. 0.73
   3 !   16.5   0.1   1.9e-06    0.0039      84     136 ..     230     282 ..     218     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.72
                 CCEEE-SSS--EEEE-HHHHHHHHHHHTTTTT-SS--EEEE CS
        MipZ 138 llgkvdpetlkvkrpslyaelvwearkkrakaerkevdWvv 178
                 l  +++++ l+++++s+y    + a  k  k  r++vd+ v
  EHT98209.1  22 LTEQIQAQKLELQENSYYQIYAKAALAKLPKLTRASVDYAV 62 
                 56789999999999999988888887777777888888766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00079
                 EEE--SSTTSSHHHHHHHHHHH......HHTTT--EEEEE--TTT-HHHHHHHH CS
        MipZ   3 ivlgnekGGsGksttavhvava......LlkkGarvaaidldlrqrtlarylen 50 
                 + +gn kGG  k+  +v +a a      Ll++ +r+ +idld  q + + +l+ 
  EHT98209.1 112 LFVGNLKGGVSKTVSTVSLAHAlrahshLLYEDLRILVIDLDP-QSSATMFLNH 164
                 569*********87777777762223335778899******96.6677777654 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHH CS
        MipZ  84 aevaeleelvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvdf 136
                  + +  +++v++l++++dfi id+  + +a  + a + +d l+tP+  + vdf
  EHT98209.1 230 VHSVLYDNVVSKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPPAQVDF 282
                 555667899***************999999*******************9999 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   3.1e-07   0.00061       8     147 ..     116     277 ..     110     310 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.1e-07
    CBP_BcsQ   8 GvRGGvGttsllaaLawalhelge......svlviDlspdnlLrlhFnvdieqregwaraeldgapwrqa..........aleyapgldllP......f 84 
                  ++GGv +t  +++La+al+++ +      ++lviDl p+   +++ n +  ++ g+++a++++a +++           +  ++pg+d+lP      f
  EHT98209.1 116 NLKGGVSKTVSTVSLAHALRAHSHllyedlRILVIDLDPQSSATMFLNHE--RSVGLVEATAAQAMLQNVsrdelvnefiVSSIIPGVDVLPasiddaF 212
                 589****************987543333449**********999999877..5556666555555544431111111111345789******5555555 PP

    CBP_BcsQ  85 Gelnveekenlqq..laekaeallaalkelkeqyrwillDlpagasaltrellaladlvllvvep 147
                  + + +e  +++    + ++  + + +++lk++y++i++D   + +a  ++++a +dl ++ v p
  EHT98209.1 213 IASSWDELCATHLpgQNVHSVLYDNVVSKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPP 277
                 5556666555544312333444567789**************************99998875443 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.5e-05     0.051       4      84 ..     120     260 ..     117     274 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
  Methyltransf_24   4 GvysGvstlwllralrrnga.....grlvavdhdpg.................aeeaaalar.........................eaglddr 50 
                      Gv++ vst+ l+ alr++ +      r++++d dp+                 a++a+a+++                         +      
       EHT98209.1 120 GVSKTVSTVSLAHALRAHSHllyedLRILVIDLDPQssatmflnhersvglveATAAQAMLQnvsrdelvnefivssiipgvdvlpaS------ 207
                      888999**************99999999999999987777777666666655522233333333334333333333333333333330...... PP

  Methyltransf_24  51 vrlikads...........................eealaslaagsiDllfiDgghaaeav 84 
                                                         ++++++l+ +++D++fiD g+  +a 
       EHT98209.1 208 -------IddafiasswdelcathlpgqnvhsvlyDNVVSKLK-KDYDFIFIDSGPHLDAF 260
                      .......133334444444444444544455455477888888.99*******98766554 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   3.2e+02       7      29 ..     115     137 ..     111     142 .. 0.84
   2 ?    9.8   0.0   0.00022      0.43      51     137 ..     211     300 ..     204     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
       VirC1   7 cslkGGaGkttalmglcsalasd 29 
                   lkGG  kt + ++l  al ++
  EHT98209.1 115 GNLKGGVSKTVSTVSLAHALRAH 137
                 579***********999998765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
       VirC1  51 alrkgawddacevfvade.l.plleaayeeaegeGfdyaladtrgGsselnntiiassdllliPtmltpldidealatyryviell.lae 137
                 a   ++wd+ c  +   + + ++l +       + +d+ ++d+      + +  ia+sdll+ P   +++d  ++l+    + el+ + e
  EHT98209.1 211 AFIASSWDELCATHLPGQnVhSVLYDNVVSKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPPAQVDFHSTLKYLTRLPELIgIIE 300
                 55678899999877643312133434444445679*******9999999999999*********************99998888876555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00021      0.42       7      55 ..     113     165 ..     109     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
        ParA   7 avlSgKGGVGKStvavnlAlaLa......kkglkvgllDaDiyGpsiprllgvee 55 
                  v   KGGV K+  +v+lA aL+       ++    +l +D+   s ++++  +e
  EHT98209.1 113 FVGNLKGGVSKTVSTVSLAHALRahshllYED--LRILVIDLDPQSSATMFLNHE 165
                 56777*****************9433322333..445555555556666665554 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3      0.33   6.5e+02     160     241 ..       6      91 ..       1      92 [. 0.68
   2 ?    9.2   0.0    0.0003       0.6       8      49 ..     116     164 ..     109     256 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
                  HHHHHHHHHHCCCSHCHHHHHH.HHHHHHHHHHHHHHHHHH..HHTSTTTEEEE.EEEESSHHHHHHHHHHHHHHHHTT-EEEEEE CS
  ArsA_ATPase 160 eklsplakqlvkllglggvsie.ealeeleetkeeikkvee..iltdpertsfr.lVvipEklslkEteRaikeLkkygikvdavi 241
                   +++++a+ + ++l     +i+ ++le  e+ + +i +  +   l   +r+s+  +V   E+   +  +Ra+ +  ky ++++++i
   EHT98209.1   6 SQVMKVAQRSERMLLSLTEQIQaQKLELQENSYYQIYAKAAlaKLPKLTRASVDyAVNEMEESGYQFDKRAAGSSVKYAMSIQNII 91 
                  57788888888877666666666888888888888754444004444455566425777788888888999999999999998887 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0003
                  E.STTSSHH..HHHHHHHHH....HHHTTS-EEEEE-STTTHHHHHHTS CS
  ArsA_ATPase   8 G.KGGVGKt..tvsaatavk....lsekgkkvllistDPAhslsDsfdq 49 
                    KGGV Kt  tvs a a++    l  ++ ++l+i +DP  s    +++
   EHT98209.1 116 NlKGGVSKTvsTVSLAHALRahshLLYEDLRILVIDLDPQSSATMFLNH 164
                  259*****95567777777665556667899********9886666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2806.75
//
Query:       EHT98210.1  [L=40]
Description: hypothetical protein CKS_3071 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 327.77
//
Query:       EHT98211.1  [L=309]
Description: putative replication protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-25   88.1   0.0    9.1e-25   87.8   0.0    1.1  1  Rep_3     Initiator Replication protein


Domain annotation for each model (and alignments):
>> Rep_3  Initiator Replication protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   5.1e-29   9.1e-25       4     215 ..      28     279 ..      25     284 .. 0.91

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 5.1e-29
                 EEEEEGGGHHHHHHS-HHHHHHHHHHHHTS-TTS---SSEEEEHHHHH....HHHT--HHHHHHHHHHHHH.-B---S----------BSEEEEEEETT CS
       Rep_3   4 lvvksndlvqaaykltlmelklfvlalskikkkdedekeykisasdlaeellgvkaegaykrlkealerLd.kkdfkigeekdeeevenlvlwvgiika 101
                 l ++ n++vq++   +lm+l+lfv++l+++ +   + +  +++a+++ + l+ vkaeg y+++ +++ rLd ++dfk+              w gii++
  EHT98211.1  28 LHPNKNNTVQPV---ALMRLGLFVPTLKSTARGISGAM-ASTDATKELKNLSLVKAEG-YEKITITGARLDmDNDFKT--------------WAGIIQS 107
                 56899*******...*****************999888.7888888888999******.*******************..............******9 PP

                 T....TEEEEEE-TTTGGGSS--GGGEEEEEHHHHHH.---HHHHHHHHHH..........HHT..........SS-EEEEEEHH...........HHH CS
       Rep_3 102 vkykegkvelefsdtlkpyllelkknftkyelaefsk.LrskyskrLyell..........kqf..........kstgkdeisle...........elk 168
                 +    +++     dt+++++++++k ++++++a++s+ Lr++   +L +++          k            ++ +kd++ ++           + k
  EHT98211.1 108 F----SRYPT-QGDTVTLPFIDFVK-MCGIPSANSSAaLRKRLDASLRRIAtntlsfegngK-AyhthlvqsayYDREKDIVRIQadpklfelynfDHK 199
                 9....88888.9*************.*************************77655555552.057777777779999999999888999999999888 PP

                 HHH.T-.......................EESS-SHHHHHHHTH.HHHHHHHHH........HSSE.EEEEEEE--TTS- CS
       Rep_3 169 ellglp.......................kskykrfkdlkkrvl.kpaikeine........ltdi.nleyekekkGrki 215
                  ll+l+                       +++++++++l+ r++  + i ++n+        l++i +l+y+++k+Gr++
  EHT98211.1 200 VLLQLRaisrlkrkesaqalytfleslptNPAPISLARLRMRLNlGSKITTQNHvvrrameqLKEIgYLDYSEVKRGRSV 279
                 88888899999999999999**********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2732.21
//
Query:       EHT98212.1  [L=456]
Description: succinate semialdehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-133  445.7   0.3   1.8e-133  445.4   0.3    1.0  1  Aldedh           Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.044   13.8   3.5       0.06   13.4   1.0    2.3  2  baeRF_family2    Bacterial archaeo-eukaryotic release factor 
       0.16   10.5   0.0       0.23   10.0   0.0    1.1  1  Nucleopor_Nup85  Nup85 Nucleoporin


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.4   0.3  3.1e-137  1.8e-133      11     462 .]       7     451 ..       3     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 445.4 bits;  conditional E-value: 3.1e-137
                 EEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH.HS CS
      Aldedh  11 vinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek.le 108
                 + nP+tge++ak+p  ta+++++ ++++++a kaw++ ++  R ++Lr++ + l++r+ el++++tle+Gkp+a+arae+ ++++ +++yae     l+
  EHT98212.1   7 SRNPTTGEILAKYPMQTASELEQTLDSSAKASKAWRQSSMDMRVNVLRQLSEQLRQREPELTRMITLEMGKPVAQARAEILKCASLCDWYAEFGPAmLQ 105
                 579******************************************************************************************999455 PP

                 EEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTES CS
      Aldedh 109 gevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevd 207
                 ++  ++    +a+   +P+G+++a++PWNfP+  +++ ++  l+aGNt +lK a+++  sa+l+aelf++ +lP+g +n+++ +++ v+ a+ ++++++
  EHT98212.1 106 DQPSQI---PDAWQSFRPIGTILAVMPWNFPFWQVLRGAVGMLLAGNTYLLKHAPNVMGSAMLMAELFDATDLPEGGFNLINVDNEGVSTAI-RDDRIA 200
                 555444...46899999******************************************************************777776665.678*** PP

                 EEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT- CS
      Aldedh 208 kvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedt 306
                 +v+ tGs++ g  ia++a++ lk+++lElGG +p+ivl+daDld+av+++v+g f n+GQvC+aa+r++v+  i+++f  ++vea+k+lk+gdplde+t
  EHT98212.1 201 AVAVTGSVRAGAAIAAQAGAALKKTVLELGGSDPFIVLADADLDEAVKSAVTGRFQNTGQVCMAAKRFIVEAPIAEAFEMRFVEAVKALKIGDPLDEQT 299
                 *************************************************************************************************** PP

                 SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SB CS
      Aldedh 307 dvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkd 405
                  +GP+++ + +++++++v+    +ga+l+lGg   e+   +g++++Pt+l++vt+dm+ +++E+FGPV+++  ++d ++a+eiaN++e+GL+a+v+t++
  EHT98212.1 300 YIGPMARYDLRDELDEQVKASLRQGARLVLGG---EKIAGQGNYYAPTILSDVTSDMTAFRQELFGPVAAIAVARDADHALEIANNSEFGLSATVWTNN 395
                 ********************************...77899*********************************************************** PP

                 HHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 406 leraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                  +rae+++++le+G v iN   ++++     gGvk+Sg+Gre ++ g++e+++++tv
  EHT98212.1 396 TDRAEQMTANLEVGAVFINGNGASDPRV-TIGGVKKSGYGRELSHFGVHEFCNIQTV 451
                 *********************9999999.*************************997 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0     1e-05      0.06      67     133 ..     190     256 ..     187     267 .. 0.91
   2 ?   -0.9   0.1      0.25   1.5e+03      87     103 ..     305     321 ..     303     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
  baeRF_family2  67 vdrlvresgaelVvlaGDvrarsllrdeLpervrelvvevegggraagadrealaeevaealaerra 133
                    v  ++r+ +  +V ++G vra ++++++ ++++++ v e+ g       ++++l+e+v++a+++r +
     EHT98212.1 190 VSTAIRDDRIAAVAVTGSVRAGAAIAAQAGAALKKTVLELGGSDPFIVLADADLDEAVKSAVTGRFQ 256
                    77889999*********************************99999999**********99998765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.25
  baeRF_family2  87 arsllrdeLpervrelv 103
                    ar +lrdeL e+v++ +
     EHT98212.1 305 ARYDLRDELDEQVKASL 321
                    89999999999999765 PP

>> Nucleopor_Nup85  Nup85 Nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   3.9e-05      0.23     195     284 ..      14     111 ..       9     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.9e-05
                      HHHTT--SS...........-HHHHHHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHT-HH.......HHHHT-SSHHHHHHHHHHHT- CS
  Nucleopor_Nup85 195 elLkkmPvysve.eglslsefekkwreWksevlellqngsfseqkisgelrdnledllkilsGnes.......kileysetWyellvglllYyi 280
                      e+L k+P+++ +  +++l  + k+ + W+++   ++ n+  + +++ ++ +++l+ ++ + +G+           +++ ++Wy  +   +l  +
       EHT98212.1  14 EILAKYPMQTASeLEQTLDSSAKASKAWRQSSMDMRVNVLRQLSEQLRQREPELTRMITLEMGKPVaqaraeiLKCASLCDWYAEFGPAMLQDQ 107
                      79*******99877889999********************99999*******************99889995555667799**99988888887 PP

                      --TH CS
  Nucleopor_Nup85 281 Ptlk 284
                      P+ +
       EHT98212.1 108 PSQI 111
                      7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3581.04
//
Query:       EHT98213.1  [L=410]
Description: putative G3E family GTPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-60  201.7   0.1    8.5e-60  201.3   0.1    1.1  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    5.4e-28   96.8   0.3    1.6e-27   95.2   0.1    1.9  2  CobW_C           Cobalamin synthesis protein cobW C-terminal 
    0.00049   20.0   0.1      0.097   12.6   0.0    2.2  2  RsgA_GTPase      RsgA GTPase
     0.0019   17.3   0.0       0.69    8.8   0.0    2.3  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
  ------ inclusion threshold ------
      0.012   14.7   0.0       0.02   13.9   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.018   15.4   0.1       0.05   14.0   0.1    1.9  1  AAA_16           AAA ATPase domain
      0.026   14.5   0.0       0.04   13.8   0.0    1.2  1  ATPase_2         ATPase domain predominantly from Archaea
      0.042   13.9   0.0       0.08   12.9   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.067   12.9   0.0       0.13   12.0   0.0    1.5  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.12   11.6   0.0       0.22   10.7   0.0    1.4  1  Zeta_toxin       Zeta toxin
       0.13   12.1   0.0       0.28   11.1   0.0    1.5  1  MobB             Molybdopterin guanine dinucleotide synthesis
       0.15   11.5   0.0         13    5.2   0.0    2.2  2  GTP_EFTU         Elongation factor Tu GTP binding domain
        0.2   11.8   0.1       0.46   10.6   0.1    1.8  1  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.1   6.2e-63   8.5e-60       1     176 [.      15     220 ..      15     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 6.2e-63
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT........EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECT CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgve.......ivelenGciCctlredllkelealeereerldviliEttG 92 
                 pv+vl+GflG+GKTtLlnh+l+nr+g+++avivN+++ev+iDa+l+r+ g+        +ve++nGciCctlredll e+++l+++  r+d+++iE+tG
  EHT98213.1  15 PVSVLSGFLGAGKTTLLNHILNNREGRRIAVIVNDMSEVNIDAALVRNGGAAlsrtdekLVEMSNGCICCTLREDLLLEVKRLASED-RFDHLVIESTG 112
                 799*******************************************6665555566666****************************.9********** PP

                 TTTHHHH..HTT.....SHHHHHCCCECEEEEEEETTTH...................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHH CS
        cobW  93 laePapv..aft.....eeelksdltldavvavvDaknl..................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerl 166
                 ++eP pv  +ft      e+l++ ++ld++++vvD+ n+                  e++e++  +++ dq++++d+l++nKtDl+++e++ ++l+++l
  EHT98213.1 113 ISEPLPVaeTFTfadeeGESLSTVARLDTMITVVDGYNFlrdyrsldslqargeslgEEDERSVVDLLIDQIEFCDVLIVNKTDLISHEDQ-RTLKAML 210
                 *******9966677998999*************************************99******************************76.******* PP

                 HHHHTTS-EE CS
        cobW 167 rqlnpeakvl 176
                 ++lnp+a+++
  EHT98213.1 211 HRLNPRARII 220
                 ******9987 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   3.9e+03      70      90 ..      39      59 ..      28      61 .. 0.85
   2 !   95.2   0.1   1.2e-30   1.6e-27       1      94 []     266     381 ..     266     381 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
      CobW_C 70 rrseLVfIGrdldkealeeaL 90
                 + ++ +I  d+++  +++aL
  EHT98213.1 39 EGRRIAVIVNDMSEVNIDAAL 59
                5679999999**999999988 PP

  == domain 2  score: 95.2 bits;  conditional E-value: 1.2e-30
      CobW_C   1 issfvfrarrpfdperleelleeelpegilRaKGivwlagkpd.alvlqgvggrlrlepagawwaa......................ededrrseLVf 76 
                 i+sfv+rarrpf+per++++++  + eg++R+KG++wla++p+ a +++++g   r++ ag wwa+                        +d r+eLVf
  EHT98213.1 266 IRSFVYRARRPFHPERFWHAVNH-QLEGVIRSKGYFWLASRPEyAASWSQAGAIARHGYAGSWWASiprdkwpqdseslafitdnwidGTGDARQELVF 363
                 79*********************.****************************************************************99********* PP

      CobW_C  77 IGrdldkealeeaLdacl 94 
                 IG d+d+  +++aLd++l
  EHT98213.1 364 IGIDMDETTVRAALDHAL 381
                 ***************986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     7e-05     0.097     101     124 ..      16      39 ..       6      56 .. 0.82
   2 ?    5.2   0.0     0.013        18      50      79 ..     189     217 ..     173     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7e-05
                  EEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpele 124
                  +svl G  G+GK+tL+n++l++ e
   EHT98213.1  16 VSVLSGFLGAGKTTLLNHILNNRE 39 
                  79*****************99754 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
                  EEEEE-GGG--HHHHHHHHHHHHHHTTSEE CS
  RsgA_GTPase  50 vivlnKiDlleeeeeleelkeelealgyev 79 
                  v+++nK+Dl+++e+  ++lk+ l++l+ + 
   EHT98213.1 189 VLIVNKTDLISHED-QRTLKAMLHRLNPRA 217
                  7999*********9.888888888887655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0005      0.69      34      68 ..      19      51 ..       7      71 .. 0.81
   2 !    6.1   0.0    0.0035       4.8     166     198 ..     184     215 ..     180     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0005
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavlavDPs 68
                l G+ GaGk tl++++  +  r+G+r+av+  D s
  EHT98213.1 19 LSGFLGAGKTTLLNHILNN--REGRRIAVIVNDMS 51
                789***********99875..99******987655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0035
                 HHH-SEEEEE---HHHHHHHHHHHHHHHHHCST CS
        MeaB 166 leiaDiivvnkaDkkeaekaarelraaleleee 198
                 +e  D+++vnk+D+   e  +r+l+a+l+ +++
  EHT98213.1 184 IEFCDVLIVNKTDLISHE-DQRTLKAMLHRLNP 215
                 799**********87654.57788888887665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05      0.02     133     174 ..      18      58 ..       4      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
       T2SSE 133 lvsGgTgsGKttllyallkeinksderivtvEDpvEiqlega 174
                 ++sG  g GKttll+ +l+  + + +  v+v D  E+++++a
  EHT98213.1  18 VLSGFLGAGKTTLLNHILNNREGR-RIAVIVNDMSEVNIDAA 58 
                 789***************998887.677899******99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.6e-05      0.05      20      63 ..      10      53 ..       4     222 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.6e-05
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                 + r ++ +lsG  G GK++l++++l+  e++++ ++  +  + 
  EHT98213.1 10 TDKRLPVSVLSGFLGAGKTTLLNHILNNREGRRIAVIVNDMSEV 53
                555667789*****************999998655543333333 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05      0.04      22      63 ..      16      56 ..      10      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
    ATPase_2 22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesis 63
                + ++ G  g GKt+Ll++i++n+e      + +++++e++i+
  EHT98213.1 16 VSVLSGFLGAGKTTLLNHILNNREGRRI-AVIVNDMSEVNID 56
                66788999***************88765.6668888887776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05      0.08      21      42 ..      16      37 ..       3      45 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                EEEEEESTTSSHHHHHHHHHHH CS
        TsaE 21 vilLeGdLGaGKTtlvrglaka 42
                v +L+G LGaGKTtl  +++++
  EHT98213.1 16 VSVLSGFLGAGKTTLLNHILNN 37
                468**************99876 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.5e-05      0.13       2      36 ..      18      48 ..      17      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-05
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaellt 36
                     v +G+ G+GK+tl+ ++l+++    ++r+ a++++
       EHT98213.1 18 VLSGFLGAGKTTLLNHILNNR----EGRRIAVIVN 48
                     789****************95....4444343333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.22      17      52 ..      15      49 ..       4      53 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
  Zeta_toxin 17 klillgGqpGAGKselaellkdelerqgnvvrldpD 52
                 + +l+G  GAGK++l++ + ++  +++++ ++  D
  EHT98213.1 15 PVSVLSGFLGAGKTTLLNHILNNR-EGRRIAVIVND 49
                45679****************996.57777777666 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.28       4      44 ..      19      57 ..      16      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
        MobB  4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdk 44
                + g+ g+GKTtLl+++++  +++g r+++i  +  ++++d 
  EHT98213.1 19 LSGFLGAGKTTLLNHILN--NREGRRIAVIVNDMSEVNIDA 57
                67899***********98..588999***999999999885 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.017        24      10      27 ..      21      38 ..      12      59 .. 0.80
   2 ?    5.2   0.0    0.0097        13     122     153 ..     185     216 ..     131     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.017
                ESTTSSHHHHHHHHHHHT CS
    GTP_EFTU 10 ghvDhGKtTLtdrLlykt 27
                g + +GKtTL+ ++l + 
  EHT98213.1 21 GFLGAGKTTLLNHILNNR 38
                55679*********9765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0097
                 TTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU 122 gvpiivfiNKmDrlkaelkeiveevkqklsrk 153
                 +   ++++NK D + +e +++ +++ ++l+ +
  EHT98213.1 185 EFCDVLIVNKTDLISHEDQRTLKAMLHRLNPR 216
                 444699********999999999988888554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00033      0.46       4      31 ..      19      52 ..      17     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
                EEESTTSSHHHHHHHHHTS......TEEESSSTT CS
    MMR_HSR1  4 ivGrpNvGKStLinaltge......kaivsdkpg 31
                + G   +GK+tL+n ++++      ++iv+d+  
  EHT98213.1 19 LSGFLGAGKTTLLNHILNNregrriAVIVNDMSE 52
                678899***********95333333346666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3012.29
//
Query:       EHT98214.1  [L=508]
Description: extracellular solute-binding protein, family 5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-74  250.0   0.0    4.6e-74  249.6   0.0    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.0   2.6e-78   4.6e-74       2     374 ..      68     425 ..      67     428 .. 0.92

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 2.6e-78
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                  vpaLAes w++s+Dg++++f+LR ++ F+DG+p+tAe vv s++ +  +++    a   +        +   d+ v++tl++p++++l++la+  ++i
  EHT98214.1  68 AVPALAES-WDISPDGLQWRFTLRSNAHFHDGSPVTAESVVKSLNTARSKPGLLDKAPITS--------VSGEDRRVTVTLSEPFTPLLAVLAESRSQI 157
                 69******.7******************************************999988774........8899************************** PP

                 GCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEEEEE CS
   SBP_bac_5 101 akkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglkvly 199
                      + ++++d++t + ++g+GP++l++f+p q++ ++r++ Yw g+kp ++r ++     +++ra+ ++sG++d+v ++ +++ ++l  +++l+v  
  EHT98214.1 158 L----ALSSWDDTNTITRVIGSGPFQLVSFQPPQSLSVKRFEGYW-GEKPSIERARYLSAGRAETRALLAESGDADYVFNLDAASRQRLSHKSSLQV-L 250
                 *....99**************************************.**************9999999999***************************.* PP

                 EEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETC..E CS
   SBP_bac_5 200 espgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrek..k 296
                 +   +++ +l +N ++p+++ +  R+Als+Ai+r+++  a+l  y ++a++++pps++g+++   ++  +y p+ A +lL++ G+  g +g+l+ +  +
  EHT98214.1 251 TVSVPRTVMLKLNVAHPFLKEQTTREALSLAINRNALSAAIL-RYPGAATQMFPPSMAGWHNASLQPL-DYAPQRAAALLAQSGWISGRDGMLTRAgqR 347
                 *****************************************5.6666777776666666666655543.69**********************999999 PP

                 EEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECT.TSTTHHHHHHHHSTTC CS
   SBP_bac_5 297 lkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgad.ypdpdnflnpflsssg 374
                  +ltll++++ p    ia +iqqql+++Gi+v ++++ + ++  +r +dg ++m+l + +   +pdp   l + ++s+g
  EHT98214.1 348 FTLTLLTYPDRPELPLIAMVIQQQLREVGIEVIINSTNS-SEIPARHHDGSLQMALYARNFAlTPDPGGTLLQDYGSQG 425
                 99***********************************99.9***************96555548888888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3883.80
//
Query:       EHT98215.1  [L=311]
Description: permease component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-30  106.6   5.2    1.2e-30  106.6   5.2    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.9     0.084   1.5e+03      45      45 ..      97      97 ..      10     119 .. 0.52
   2 !  106.6   5.2   6.6e-35   1.2e-30       2     182 ..     119     307 ..     118     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.084
  BPD_transp_1 45 i 45
                   
    EHT98215.1 97 G 97
                  2 PP

  == domain 2  score: 106.6 bits;  conditional E-value: 6.6e-35
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaara 89 
                   i++G +a+ ++++++d+l+ +l  ++ s+P+f+l++ll+++f         +  +  +h ilp+++l+l+ +a  +r++r+a  +++  ++++    
    EHT98215.1 119 IPAGGWAGCRPGGVVDRLINVLAPTFKSIPHFALGLLLIMLFslrlnwlpsAGHGEGQHFILPALTLALTLSAVGARVVREATCQAVKAGWYRWGAQ 215
                   899*******************************************9999877777789************************************** PP

  BPD_transp_1  90 lGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   +G+s  ++f ++ l+n+  p++t ++++f++l+ g v++e+l++wpG+g  l++ai ++d++ i+ +++++l++ ++ ln ++d +  +ldpr
    EHT98215.1 216 KGLSAPHLFLRHGLRNLSVPVVTWIGMQFVWLVEGVVVIETLFAWPGVGHALVHAIFARDVPVIQ-ASAVVLGLTFVTLNMLVDGVCYVLDPR 307
                   *****************************************************************.**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2450.16
//
Query:       EHT98216.1  [L=263]
Description: nickel transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-14   52.5  20.0    4.7e-14   52.5  20.0    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.03   14.3   1.1       0.03   14.3   1.1    3.7  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5      0.11     1e+03     181     181 ..      27      27 ..       6      86 .. 0.43
   2 !   52.5  20.0   5.3e-18   4.7e-14       1     172 [.      83     254 ..      79     256 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.11
  BPD_transp_1 181 p 181
                   +
    EHT98216.1  27 Q 27 
                   1 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 5.3e-18
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l+Gi +a  +++++d+l+  l ++ l+lP ++l++ll        i+ ++ l+ ++ l+l+ ++ ++r++r+    ++ +  v+ + +lG s   
    EHT98216.1  83 GLLAGIASA-WYGGWVDRLFGMLADMCLALPGLLLVLLLA------AIAPDAPLMlWLGLSLVLWVEFFRVTRATLRPVVMSPAVQSSSLLGFSIVY 172
                   677888888.******************************......9999999999***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlva 172
                   +fr+++ P++ p ++t+ ++af +++ + ++l f+     +g +  +++lg +++e              +v++l i+++ lnl++
    EHT98216.1 173 LFRRHLWPALSPLLLTLTVYAFSNAIMAVSALGFIS----VGVRPPTPELGLMMTELFpyaweapwllLQPVVVLFILLVGLNLLV 254
                   ************************************....************************9988888888888888888876 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.1   3.3e-06      0.03      19      51 .]       8      42 ..       6      42 .. 0.85
   2 ?   -2.2   0.4      0.46   4.2e+03      18      27 ..      72      81 ..      68      96 .. 0.59
   3 ?    0.7   1.7     0.057   5.1e+02      20      32 ..     114     124 ..     109     146 .. 0.65
   4 ?   -3.2   1.4      0.97   8.7e+03      22      29 ..     241     248 ..     240     252 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-06
      OppC_N 19 glvilllllliaifaPliaPydp..qdliqnllpP 51
                glvi+l+ll++a + Pl+  +dp   dl q+l pP
  EHT98216.1  8 GLVIILTLLAFAWLMPLLNQNDPlqLDLLQMLTPP 42
                9*****************99999844444789998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.46
      OppC_N 18 vglvilllll 27
                ++l+++ ++l
  EHT98216.1 72 AALCVITAML 81
                4455554443 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.057
      OppC_N  20 lvilllllliaif 32 
                 l +  +lll+ai 
  EHT98216.1 114 LLL--VLLLAAIA 124
                 333..33443333 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 0.97
      OppC_N  22 illlllli 29 
                 ++l++ll+
  EHT98216.1 241 VVLFILLV 248
                 44444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1800.63
//
Query:       EHT98217.1  [L=470]
Description: ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-43  147.6   0.0    1.7e-20   73.9   0.0    2.3  2  ABC_tran         ABC transporter
    1.2e-10   41.7   4.6      0.051   13.4   0.2    4.1  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.2e-09   38.7   0.8    0.00034   21.0   0.1    2.4  2  AAA_16           AAA ATPase domain
    1.2e-06   28.2   0.3     0.0033   17.1   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
    4.4e-05   23.0   0.5        1.3    8.4   0.0    3.9  3  SMC_N            RecF/RecN/SMC N terminal domain
    0.00023   21.7   0.3       0.56   10.7   0.0    2.2  2  AAA_23           AAA domain
     0.0004   20.7   0.4       0.63   10.3   0.0    2.9  2  AAA_22           AAA domain
    0.00093   18.8   0.0      0.075   12.5   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
     0.0011   18.7   0.0      0.086   12.5   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
      0.003   17.5   0.1       0.52   10.2   0.0    2.5  2  NACHT            NACHT domain
     0.0049   16.3   0.1       0.32   10.3   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0059   17.0   0.2          5    7.6   0.0    2.5  2  RNA_helicase     RNA helicase
     0.0076   16.2   0.2          5    7.1   0.1    2.4  2  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.013   15.4   0.2        0.7    9.8   0.1    2.3  2  RsgA_GTPase      RsgA GTPase
      0.053   14.1   0.0       0.11   13.0   0.0    1.5  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
      0.054   13.6   0.1        9.7    6.3   0.1    2.4  2  MMR_HSR1         50S ribosome-binding GTPase
      0.064   13.3   0.6        1.5    8.8   0.0    2.2  2  DUF87            Helicase HerA, central domain
      0.071   12.7   0.8         15    5.0   0.0    3.3  3  AAA_25           AAA domain
      0.086   12.8   0.2        8.7    6.4   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.11   11.9   0.2        8.8    5.6   0.0    2.2  2  ATPase           KaiC
       0.12   12.1   0.9        2.6    7.7   0.3    2.2  2  AAA_24           AAA domain
       0.37   10.9   3.1        1.2    9.3   0.1    2.8  2  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   2.1e-23   1.7e-20       1     136 [.      18     173 ..      18     174 .. 0.90
   2 !   71.6   0.0   1.1e-22   8.8e-20       2     137 .]     282     417 ..     281     417 .. 0.76

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2.1e-23
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGG.....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlke.....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 l+ vsl++++g+ v ++Ge+G+GKS +++++ g l +   +eG++ +dg++ +        +  + ++i+ lpqe    l+p+++v+ +          
  EHT98217.1  18 LEPVSLSIHPGRPVTFIGETGSGKSLFAQAIFGALPDglrAEGTVVIDGQQYNLrtdltALRALWGHRIAALPQEplLALDPTMRVKGQteegyryiqg 116
                 6789*******************************99999********99999888888889999**********776778888877779999999998 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      +++ +  al++lgl + +++       +LSgG+ qrv+ a+a +  ++ll++DEpt
  EHT98217.1 117 ytrqGAQQAAGLALDSLGLAHAAERFP----WQLSGGMAQRVCFAAARAGGATLLIADEPT 173
                 8875555558889999**999888877....*****************************9 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 1.1e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS...--S-TTSBHHHH..HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe...pqlfpeltvren..esdeeiekalsklglk 95 
                 +nv+l +++ge+v++ Ge+G+GKS+L  +l+gl kp++G+i+  g+    +  + ++  ++v+p +   +q+ ++l    +     ++ ++ +++lgl 
  EHT98217.1 282 RNVNLCFRAGEIVGLYGESGSGKSSLGDTLSGLIKPDKGTITRPGRFHPLRYQKLYQDPSAVFPPDitmAQIIDDLLQ--RhtIPVRRRDERMRQLGLG 378
                 79***************************************6654433334455555555555555444444444423..1346666677888888887 PP

                 G.TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 e.lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + l +++    +s LSgG+ qr +l ra+l +p +l++DEpt+
  EHT98217.1 379 QaLLHRP----ASGLSGGELQRFSLLRAMLLNPVFLFADEPTS 417
                 7344444....5*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.014        11       4      22 ..      33      51 ..      31      80 .. 0.77
   2 !    9.1   0.0    0.0013       1.1     250     301 ..     157     207 ..     137     209 .. 0.81
   3 !   13.4   0.2   6.3e-05     0.051       2      37 ..     294     323 ..     293     341 .. 0.75
   4 !   12.3   0.7   0.00013      0.11     177     303 .]     343     453 ..     334     453 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.014
      AAA_21  4 liGpNgsGKSnLLdaldll 22
                +iG  gsGKS + +a+ ++
  EHT98217.1 33 FIGETGSGKSLFAQAIFGA 51
                89**************766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0013
      AAA_21 250 allralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 a +ra +  +ll+ DEp  gL+ ++  ++ ++l+++ ++g  ++  TH+  l
  EHT98217.1 157 AAARAGGA-TLLIADEPTKGLDVARRDEIGDMLNLAVARGEALLTITHDIAL 207
                 44444444.99999************************9*********9765 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 6.3e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdels 37 
                  +l+G  gsGKS+L d+l++l       ++++ + +
  EHT98217.1 294 VGLYGESGSGKSSLGDTLSGLI------KPDKGTIT 323
                 68****************9993......44444444 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00013
      AAA_21 177 gfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkll 275
                  f++ ++++q   + l++  i+++  +e+ ++  + + +l +              pa+ lS G ++ + ll a+l  +    +l+ DEp + L+P ++
  EHT98217.1 343 VFPPDITMAQIIDDLLQRHTIPVRRRDERMRQLGLGQALLHR--------------PASGLSGGELQRFSLLRAMLLNP---VFLFADEPTSRLDPVVQ 424
                 677777788888888888888888888888888888888777..............99999****99999999999877...56888*********777 PP

      AAA_21 276 .rrllellkelsrngaQviltTHSpllld 303
                   +l+ l +++ + +  ++l++H+ +ll+
  EHT98217.1 425 qQTLALLTDLAMQQRCAILLVSHDLTLLE 453
                 355555668888899*********99985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.4e-05     0.012      25     122 ..      29     149 ..      17     191 .. 0.72
   2 !   21.0   0.1   4.1e-07   0.00034      24     161 ..     291     434 ..     278     465 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala............. 106
                 + v ++Ge G+GKs  +++++ al +     g +++ g+   l+++   ++ ++al + + +++l +e+  a+ +  r k +++ +             
  EHT98217.1  29 RPVTFIGETGSGKSLFAQAIFGALPDGlraeGTVVIDGQQYNLRTD---LTALRAL-WGHRIAALPQEPLLALDPTMRVKGQTEEGyryiqgytrqgaq 123
                 66999****************8777666554555566666666444...4589999.77*********9999999999999998888888888877766 PP

      AAA_16 107 .....avpelagaea.....srllel 122
                      a ++l  a+a      +l   
  EHT98217.1 124 qaaglALDSLGLAHAaerfpWQLSGG 149
                 66655444444444464455444444 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.1e-07
      AAA_16  24 pelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipy...sa.laqalareellrqllde.........aesaeleawrekleealaav 108
                 +e+v l+GesG+GKssl ++l   ++ d+  i+  g+++ l+ +  y   sa +   ++  +++ +ll++         ++ ++l+  ++ l++   ++
  EHT98217.1 291 GEIVGLYGESGSGKSSLGDTLSGLIKPDKgTITRPGRFHPLRYQKLYqdpSAvFPPDITMAQIIDDLLQRhtipvrrrdERMRQLGLGQALLHR---PA 386
                 38999******************99999536667888888855544455533355555555555555555222111111444444444444444...44 PP

      AAA_16 109 pelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslql.laaLlrl 161
                 + l+g e +r+  l + ll        p+ l+ D+   ++d+  +q  la+L +l
  EHT98217.1 387 SGLSGGELQRFSLLRAMLL-------NPVFLFADEPTsRLDPVVQQQtLALLTDL 434
                 4555554444443322222.......23555555433344444444434444333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0019       1.5      17      41 ..      23      47 ..      17      52 .. 0.77
   2 !   17.1   0.1     4e-06    0.0033      12      50 ..     281     319 ..     278     323 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0019
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDA 41
                ++i++   + ++G++GsGKS +  A
  EHT98217.1 23 LSIHPGRPVTFIGETGSGKSLFAQA 47
                56666667889*********76555 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 4e-06
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50 
                 f++  + ++  +++ l G+sGsGKS+l D ++ l+ p+k
  EHT98217.1 281 FRNVNLCFRAGEIVGLYGESGSGKSSLGDTLSGLIKPDK 319
                 566667777555899*****************9999987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0016       1.3      29     185 ..      33     190 ..       4     223 .. 0.60
   2 !    6.1   0.0    0.0079       6.5      26      44 ..     293     311 ..     278     331 .. 0.85
   3 ?    1.4   0.1      0.22   1.8e+02     137     205 ..     389     455 ..     348     464 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0016
                 EEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE...EEEEETTEEE-H..HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx..xx RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge...seykingkevtk..ke 122
                  +G+ GSGKs + +Ai   +G      lr+e  + +i  ++ + +++   +  ++ +  ++l+ +++ + +  ++  kg+      +i+g + +   + 
  EHT98217.1  33 FIGETGSGKSLFAQAI---FGALPD-GLRAEG-TVVIDGQQYNLRTDLTALRALWGHRIAALP-QEPLLALDPTMRVKGQteeGYRYIQGYTRQGaqQA 125
                 5788999999999998...664333.677654.345555555666666666665544444422.22223322222222221113334555444431033 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                     l s g+         +LSgG    +a  + fA  ++  a l + De    LD +++ ++ ++l+ 
  EHT98217.1 126 AGLALDSLGLAHAaerfpwQLSGG----MAQRVCFAAARAGGATLLIADEPTKGLDVARRDEIGDMLNL 190
                 333444444444466677778888....56677888888888888888888888888888888888874 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0079
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +  ++G+ GSGKs+l d +
  EHT98217.1 293 IVGLYGESGSGKSSLGDTL 311
                 56789**********9987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemleka 205
                 LSgGe  L   +Ll A+   +p  + + De  + LD    ++   ll   + ++++ ++ +s++ ++le++
  EHT98217.1 389 LSGGE--LQRFSLLRAMLL-NP-VFLFADEPTSRLDPVVQQQTLALLTdlAMQQRCAILLVSHDLTLLERS 455
                 78887..445666655432.23.35556********99988888888834345558888899988888765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00069      0.56      15      43 ..      25      52 ..       4      74 .. 0.84
   2 !    9.0   0.1    0.0022       1.8      10      36 ..     281     308 ..     272     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00069
      AAA_23 15 idFskgltlItGpNGaGKTTildAiklaL 43
                i+ ++++t  +G++G+GK+ + +Ai  aL
  EHT98217.1 25 IHPGRPVTF-IGETGSGKSLFAQAIFGAL 52
                666777765.5**************9998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0022
      AAA_23  10 frdqeidFsk.gltlItGpNGaGKTTil 36 
                 fr++++ F    ++ ++G+ G+GK+++ 
  EHT98217.1 281 FRNVNLCFRAgEIVGLYGESGSGKSSLG 308
                 78999999553699************95 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00078      0.63       8      31 ..      31      54 ..      26     126 .. 0.75
   2 !    7.6   0.2    0.0053       4.3       8      27 ..     294     313 ..     289     447 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00078
      AAA_22  8 lvvtGesGtGKTtllrrlleqlde 31
                ++ +Ge+G+GK++ ++ ++  l+ 
  EHT98217.1 31 VTFIGETGSGKSLFAQAIFGALPD 54
                6789************99988853 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0053
      AAA_22   8 lvvtGesGtGKTtllrrlle 27 
                 + ++GesG+GK+ l  +l  
  EHT98217.1 294 VGLYGESGSGKSSLGDTLSG 313
                 5689********99888765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.2e-05     0.075      27      58 ..      22      53 ..       2      61 .. 0.84
   2 ?    3.7   0.0     0.049        40      27      53 ..     285     311 ..     280     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.2e-05
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkld 58
                +l ++ ++pv ++G+tG+GK++ ++ ++ +l+
  EHT98217.1 22 SLSIHPGRPVTFIGETGSGKSLFAQAIFGALP 53
                5677889*****************99887776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.049
       AAA_7  27 elllknkkpvllvGptGtGKtviikdl 53 
                 +l+++++  v l+G++G+GK+++  +l
  EHT98217.1 285 NLCFRAGEIVGLYGESGSGKSSLGDTL 311
                 67788888899**********986655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00011     0.086      23      45 ..      29      51 ..      15      85 .. 0.83
   2 ?    3.6   0.0     0.059        48      11      42 ..     280     311 ..     272     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                     S-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat 23 lsvlitGesGtGKellaraihea 45
                      +v   Ge+G+GK+l+a+ai+ a
       EHT98217.1 29 RPVTFIGETGSGKSLFAQAIFGA 51
                     578899**************974 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.059
                      HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  11 lleqikkvaktdlsvlitGesGtGKellarai 42 
                      l+++++ + +    v + GesG+GK+ l +++
       EHT98217.1 280 LFRNVNLCFRAGEIVGLYGESGSGKSSLGDTL 311
                      556666666666778899*******9987765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00064      0.52       1      25 [.      29      53 ..      29      64 .. 0.85
   2 ?    4.8   0.0     0.029        23       3      21 ..     294     312 ..     292     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00064
                SCEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  1 rlvilqGeaGsGKTtLlqklalawa 25
                r+v   Ge GsGK+ ++q +  a+ 
  EHT98217.1 29 RPVTFIGETGSGKSLFAQAIFGALP 53
                678899*************987765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.029
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 v l Ge+GsGK+ L   l 
  EHT98217.1 294 VGLYGESGSGKSSLGDTLS 312
                 5689********9976665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0004      0.32      24      53 ..      30      59 ..      19      71 .. 0.85
   2 ?    3.3   0.0     0.055        45      25      48 ..     294     317 ..     279     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplseee 53
                   + ++G  GsGK++ a+++ + lp+  ++e
    EHT98217.1 30 PVTFIGETGSGKSLFAQAIFGALPDGLRAE 59
                  5789********************866555 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.055
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpp 48 
                   + l+G +GsGK+ l   l++l+ p
    EHT98217.1 294 VGLYGESGSGKSSLGDTLSGLIKP 317
                   5589**************999865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0062         5       2      22 ..      32      52 ..      31      69 .. 0.82
   2 !    7.0   0.1    0.0094       7.6       3      19 ..     296     312 ..     294     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0062
  RNA_helicase  2 wlyGpsgeGKStlakeLakal 22
                   + G++g GKS++a+ +  al
    EHT98217.1 32 TFIGETGSGKSLFAQAIFGAL 52
                  689************987766 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0094
  RNA_helicase   3 lyGpsgeGKStlakeLa 19 
                   lyG+sg GKS+l ++L+
    EHT98217.1 296 LYGESGSGKSSLGDTLS 312
                   8**********999865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0074       6.1       2      23 ..      31      52 ..      30      81 .. 0.81
   2 !    7.1   0.1    0.0062         5       4      24 ..     296     317 ..     293     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0074
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                v  +G++G+gKs +a+ +  al
  EHT98217.1 31 VTFIGETGSGKSLFAQAIFGAL 52
                6789************998888 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0062
                 EE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   4 LvGppGtgKselaerlaaal.n 24 
                 L G++G+gKs+l + l+ ++  
  EHT98217.1 296 LYGESGSGKSSLGDTLSGLIkP 317
                 99**************999842 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.087        71     100     120 ..      29      49 ..      17      61 .. 0.83
   2 ?    9.8   0.1   0.00086       0.7      99     122 ..     291     314 ..     271     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.087
                  SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinall 120
                  + ++++G++G GKS +  a+ 
   EHT98217.1  29 RPVTFIGETGSGKSLFAQAIF 49 
                  5689**********8887775 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00086
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  ++++ l G+SG GKS+L ++l + 
   EHT98217.1 291 GEIVGLYGESGSGKSSLGDTLSGL 314
                  478899***********9999875 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00014      0.11       1      32 [.     224     255 ..     224     269 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00014
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrek 32 
                 +E+g++ ++++ p+  YTk Ll++ p   ++ 
  EHT98217.1 224 IEQGNATQVLNAPQKAYTKQLLAAEPHAWPPA 255
                 7**********************999876665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.035        29       2      22 ..      31      51 ..      30      69 .. 0.87
   2 ?    6.3   0.1     0.012       9.7       2      21 ..     294     313 ..     293     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                v ++G + +GKS + +a++g+
  EHT98217.1 31 VTFIGETGSGKSLFAQAIFGA 51
                789**************9985 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 v+++G + +GKS+L  +l+g
  EHT98217.1 294 VGLYGESGSGKSSLGDTLSG 313
                 899***********999887 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0019       1.5      29      59 ..      34      65 ..      29      67 .. 0.80
   2 ?    2.5   0.2      0.16   1.3e+02      26      41 ..     294     309 ..     277     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0019
       DUF87 29 lgsTGsGKSntvavLleellekkga.tililD 59
                +g+TGsGKS ++  ++  l    +a  ++++D
  EHT98217.1 34 IGETGSGKSLFAQAIFGALPDGLRAeGTVVID 65
                69*************98888755555666666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
       DUF87  26 lAilgsTGsGKSntva 41 
                 ++  g++GsGKS +  
  EHT98217.1 294 VGLYGESGSGKSSLGD 309
                 6889********8755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1       0.1        81      33      53 ..      28      48 ..      21      63 .. 0.80
   2 ?    5.0   0.0     0.019        15      29      50 ..     287     308 ..     275     313 .. 0.86
   3 ?    0.4   0.0      0.49     4e+02     165     188 ..     423     447 ..     409     448 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.1
      AAA_25 33 gelallaGapgtGKttlaldl 53
                g  + ++G +g+GK+ +a  +
  EHT98217.1 28 GRPVTFIGETGSGKSLFAQAI 48
                6678899**********9776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.019
      AAA_25  29 llpagelallaGapgtGKttla 50 
                 + +age++ l+G +g+GK+ l 
  EHT98217.1 287 CFRAGEIVGLYGESGSGKSSLG 308
                 66899**************985 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.49
      AAA_25 165 v.galvealeriarrtgaavllvhH 188
                 v ++ ++ l ++a + ++a+llv H
  EHT98217.1 423 VqQQTLALLTDLAMQQRCAILLVSH 447
                 35788899999*************9 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.011       8.7      19      43 ..      28      52 ..       6      61 .. 0.80
   2 ?    4.1   0.1     0.055        45       9      37 ..     275     309 ..     270     325 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.011
                TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakal 43
                g+ +++ G+ G+GK+ +++++  al
  EHT98217.1 28 GRPVTFIGETGSGKSLFAQAIFGAL 52
                444999**************98766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.055
                 HHHHHHHHCH......TEEEEEEESTTSSHHHHHH CS
        TsaE   9 algkklakal......gdvilLeGdLGaGKTtlvr 37 
                 ++gk+l +++      g+++ L+G+ G+GK+ l  
  EHT98217.1 275 RAGKTLFRNVnlcfraGEIVGLYGESGSGKSSLGD 309
                 5566666655556666788***********99865 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011       8.8      19      37 ..      28      46 ..      22      58 .. 0.88
   2 ?    3.9   0.0     0.035        28      16      36 ..     288     308 ..     283     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
      ATPase 19 grvvlitGepGtGKtifal 37
                gr v   Ge+G+GK++fa+
  EHT98217.1 28 GRPVTFIGETGSGKSLFAQ 46
                7788899**********98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.035
      ATPase  16 ipegrvvlitGepGtGKtifa 36 
                 +  g++v ++Ge+G+GK+ ++
  EHT98217.1 288 FRAGEIVGLYGESGSGKSSLG 308
                 678999************887 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.12        97       6      22 ..      32      48 ..      28      71 .. 0.76
   2 ?    7.7   0.3    0.0032       2.6       5      22 ..     294     311 ..     290     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
      AAA_24  6 liyGpsgiGKTtlakel 22
                  +G+ g+GK+ +a  +
  EHT98217.1 32 TFIGETGSGKSLFAQAI 48
                679**********9877 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0032
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 + +yG+sg+GK++l  +l
  EHT98217.1 294 VGLYGESGSGKSSLGDTL 311
                 679**********99887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0015       1.2       2      30 ..      31      66 ..      31     210 .. 0.76
   2 ?    1.5   0.2      0.38   3.1e+02       4      18 ..     296     310 ..     293     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
      AAA_33  2 vllvGlpGsGKstlaerllkklg.......avllss 30
                v ++G  GsGKs +a+ +  +l+       +v+++ 
  EHT98217.1 31 VTFIGETGSGKSLFAQAIFGALPdglraegTVVIDG 66
                679***************877776444443555544 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.38
      AAA_33   4 lvGlpGsGKstlaer 18 
                 l G +GsGKs l + 
  EHT98217.1 296 LYGESGSGKSSLGDT 310
                 6799******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3122.95
//
Query:       EHT98218.1  [L=182]
Description: hypothetical protein CKS_3061 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-13   49.9   0.0    3.4e-13   49.4   0.0    1.2  1  HTH_3       Helix-turn-helix
    1.1e-10   41.7   0.4      2e-10   40.8   0.4    1.5  1  HTH_31      Helix-turn-helix domain
    1.2e-07   31.6   0.0    1.8e-07   31.1   0.0    1.3  1  HTH_19      Helix-turn-helix domain
    1.9e-06   27.4   0.0    2.9e-06   26.9   0.0    1.3  1  Cupin_2     Cupin domain
    3.3e-06   27.4   0.0    5.6e-06   26.7   0.0    1.3  1  HTH_26      Cro/C1-type HTH DNA-binding domain
      2e-05   24.4   0.2    4.4e-05   23.2   0.2    1.6  1  HTH_25      Helix-turn-helix domain
    0.00056   19.7   0.3     0.0012   18.6   0.3    1.5  1  HTH_IclR    IclR helix-turn-helix domain
     0.0033   17.4   0.1     0.0084   16.1   0.0    1.6  2  HTH_37      Helix-turn-helix domain
     0.0036   17.0   0.1     0.0076   16.0   0.0    1.5  2  Cupin_6     Cupin
      0.006   16.1   0.2      0.012   15.1   0.2    1.4  1  Sigma70_r4  Sigma-70, region 4
  ------ inclusion threshold ------
      0.021   14.6   0.2      0.035   13.9   0.2    1.3  1  TetR_N      Bacterial regulatory proteins, tetR family
       0.03   14.6   0.1      0.059   13.7   0.1    1.4  1  HTH_Tnp_1   Transposase
      0.047   13.5   0.0       0.08   12.8   0.0    1.4  1  LacI        Bacterial regulatory proteins, lacI family
      0.095   12.8   0.1       0.36   10.9   0.1    2.0  2  HTH_20      Helix-turn-helix domain
        0.1   12.5   0.7        0.2   11.6   0.2    1.7  1  MarR_2      MarR family
       0.11   12.6   0.0       0.18   11.9   0.0    1.3  1  HTH_35      Winged helix-turn-helix DNA-binding
       0.11   12.3   1.0       0.19   11.5   0.2    1.8  2  HTH_38      Helix-turn-helix domain
       0.14   11.9   0.0       0.27   10.9   0.0    1.5  1  Cupin_3     Protein of unknown function (DUF861)
       0.21   11.4   1.1       0.39   10.6   0.1    1.8  2  HTH_23      Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   3.6e-16   3.4e-13       4      53 ..      15      64 ..      12      66 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 3.6e-16
                HHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  4 lRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                 R+ +gl+++e+A+++G+ +st+s++E G  nP +etl+ l+ aL+++++
  EHT98218.1 15 ERQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFA 64
                699********************************************987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.4   2.1e-13     2e-10       8      57 ..      14      62 ..       8      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 2.1e-13
      HTH_31  8 alReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                + R+raGL+++evA+r+g+ +stls+lE G   +p  ++l +l+ al+ +
  EHT98218.1 14 RERQRAGLTLAEVARRAGIAKSTLSQLEAGNG-NPGIETLWSLCVALNIP 62
                569*****************************.6*************986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.9e-10   1.8e-07       8      61 ..      16      68 ..      12      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.9e-10
      HTH_19  8 ReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                R  +glt++e+a+r+gi +s +s++E g+  +p++e+l +++ al+i+  +l+ 
  EHT98218.1 16 RQRAGLTLAEVARRAGIAKSTLSQLEAGNG-NPGIETLWSLCVALNIPFARLME 68
                8889************************98.****************9777765 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     3e-09   2.9e-06       2      69 ..     110     178 ..     109     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3e-09
                 EEEEETTEEEEEECSSSEE.EEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   2 lvelppGesapshrHpged.effyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 l +++pG +  s  H+ ++ e ++  +G++ +   + +vel +Gd++  p  t+H fr  + + + +lv
  EHT98218.1 110 LLHIQPGSERRSQPHSPNTiEHLILTQGRALVGPTDSPVELAPGDYISYPGDTEHIFRALEPDTLAVLV 178
                 679*****999999999888*************77788********************99999888876 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   5.9e-09   5.6e-06       9      62 ..      19      71 ..      15      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 5.9e-09
      HTH_26  9 rgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLleyep 62
                 g+t +e+ar++gi ++tls l  g   ++ ++tL  +C aL++ ++ L+e+e+
  EHT98218.1 19 AGLTLAEVARRAGIAKSTLSQLEAGN-GNPGIETLWSLCVALNIPFARLMEPEA 71
                57899********************8.7***********************996 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   4.7e-08   4.4e-05       2      34 ..      12      44 ..      11      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.7e-08
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEedd 34
                L ++R+++gl+l eva++  I+k++l +lE+++
  EHT98218.1 12 LVRERQRAGLTLAEVARRAGIAKSTLSQLEAGN 44
                6789**************************996 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   1.2e-06    0.0012      14      37 ..      16      39 ..      13      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
                TTBSS-BHHHHHHHHTS-HHHHHH CS
    HTH_IclR 14 eapqeltlselArrtglpkStvhR 37
                +++ +ltl+e+Arr+g++kSt + 
  EHT98218.1 16 RQRAGLTLAEVARRAGIAKSTLSQ 39
                78899****************876 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.9e-06    0.0084      20      57 ..       9      46 ..       7      60 .. 0.85
   2 ?   -2.7   0.0       6.2   5.9e+03       3      17 ..      64      79 ..      63      90 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.9e-06
                HHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--T CS
      HTH_37 20 alaiaeliekrelsqseaaqllgiaqPkvsrllrgkls 57
                a+ + + +++ +l+ +e+a++ gia++ +s+l+ g+ +
  EHT98218.1  9 ASSLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGN 46
                56688999*************************98764 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.2
                XXXX--HHHHHH.HHH CS
      HTH_37  3 aDlgeedaeelk.aKa 17
                a l+e++a++l+ +++
  EHT98218.1 64 ARLMEPEANRLQvIRR 79
                5577788888776555 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.8   5.5e+03      34      47 ..      72      85 ..      57     100 .. 0.57
   2 !   16.0   0.0     8e-06    0.0076      30      79 ..     125     171 ..     111     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.8
     Cupin_6 34 lalhvvlrGscwli 47
                 +l v+ rG+   +
  EHT98218.1 72 NRLQVIRRGEGPAV 85
                45556666655444 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8e-06
     Cupin_6  30 fpaglalhvvlrGscwlidpasgepvrLsagdvvllpggephvladspgt 79 
                 +p+ ++ +++++G++ +  p    pv+L++gd + +pg+++h++  + ++
  EHT98218.1 125 SPNTIEHLILTQGRALVG-PT-DSPVELAPGDYISYPGDTEHIF-RALEP 171
                 4555889999********.66.46*******************9.33333 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.3e-05     0.012      13      42 ..      13      42 ..      10      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
                HHHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 13 lelrfgeglTleEIgerlgiSrerVrqiek 42
                ++ r   glTl+E+++r gi +++ +q+e+
  EHT98218.1 13 VRERQRAGLTLAEVARRAGIAKSTLSQLEA 42
                5667789*********************95 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   3.7e-05     0.035      15      33 ..      19      37 ..       8      39 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.7e-05
                TT--HHHHHHHHTSSHHHH CS
      TetR_N 15 dattvreIAkrAGvskgal 33
                +++t++e+A+rAG++k++l
  EHT98218.1 19 AGLTLAEVARRAGIAKSTL 37
                689**************98 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.2e-05     0.059      15      42 ..      12      39 ..       9      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.2e-05
   HTH_Tnp_1 15 iVreslepgksvsevArrhgvspnqLyk 42
                +Vre   +g + +evArr g+ +++L++
  EHT98218.1 12 LVRERQRAGLTLAEVARRAGIAKSTLSQ 39
                7999999*******************87 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.5e-05      0.08       1      18 [.      22      39 ..      22      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.5e-05
                -HHHHHHHCTS-HHHHHH CS
        LacI  1 tikDVArlAGVSkaTVSr 18
                t+ +VAr+AG  k+T S+
  EHT98218.1 22 TLAEVARRAGIAKSTLSQ 39
                899************997 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00038      0.36      20      43 ..      16      39 ..       8      39 .. 0.88
   2 ?   -2.3   0.0         5   4.7e+03      19      34 ..     112     133 ..     104     138 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00038
                STCTTB-HHHHHHHHTS-HHHHHH CS
      HTH_20 20 araegltaselaerldlskntlsy 43
                ++++glt++e+a+r +++k+tls+
  EHT98218.1 16 RQRAGLTLAEVARRAGIAKSTLSQ 39
                5789******************95 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
                 H......STCTTB-HHHHHHHH CS
      HTH_20  19 L......araegltaselaerl 34 
                        +r ++++++ + +++
  EHT98218.1 112 HiqpgseRRSQPHSPNTIEHLI 133
                 2355555667788887777765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00021       0.2      17      41 ..      18      40 ..      11      40 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
                TTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2 17 rpgrdltvgelarrlglsksavsri 41
                r g  lt +e+arr g+ ks++s++
  EHT98218.1 18 RAG--LTLAEVARRAGIAKSTLSQL 40
                556..9*****************95 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.18      12      34 ..      17      39 ..       3      51 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
      HTH_35 12 rkrgttLaalsreaglssstlsn 34
                ++ g tLa+++r+ag+++stls+
  EHT98218.1 17 QRAGLTLAEVARRAGIAKSTLSQ 39
                34589****************87 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2    0.0002      0.19      18      38 ..      18      38 ..      14      39 .. 0.92
   2 ?   -3.2   0.0       7.8   7.4e+03      33      39 ..     125     131 ..     125     134 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      HTH_38 18 aeGlslreIArrLgrspsTIs 38
                 +Gl+l+e+Arr g ++sT s
  EHT98218.1 18 RAGLTLAEVARRAGIAKSTLS 38
                58*****************87 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.8
      HTH_38  33 spsTIsR 39 
                 sp+TI  
  EHT98218.1 125 SPNTIEH 131
                 7888875 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.27      21      64 ..     124     166 ..     101     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
                 ECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECC CS
     Cupin_3  21 ltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsgtw 64 
                     + E+  + +G+  v p   ++vel +GD++ +p +++   
  EHT98218.1 124 HSPNTIEHLILTQGRALVGP-TDSPVELAPGDYISYPGDTEHIF 166
                 344557888999********.9***************9887655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00042      0.39      14      36 ..      16      39 ..       9      43 .. 0.81
   2 ?   -1.8   0.1       3.2     3e+03       3      12 ..      69      78 ..      67      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
      HTH_23 14 lae.GlsvreIAreLgvsrrTvyr 36
                 ++ Gl+ +e+Ar+ g+ ++T+++
  EHT98218.1 16 RQRaGLTLAEVARRAGIAKSTLSQ 39
                3338*****************987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.2
      HTH_23  3 sereRlrill 12
                 e +Rl++++
  EHT98218.1 69 PEANRLQVIR 78
                5789***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1355.59
//
Query:       EHT98219.1  [L=221]
Description: hypothetical protein CKS_3060 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-29  100.5   5.6    1.7e-28   99.7   5.6    1.3  1  AzlC      AzlC protein
  ------ inclusion threshold ------
      0.029   12.8   0.5      0.041   12.4   0.5    1.2  1  GerA      Bacillus/Clostridium GerA spore germination protein
      0.068   13.1   3.0      0.087   12.8   0.2    2.3  2  TMEM65    Transmembrane protein 65


Domain annotation for each model (and alignments):
>> AzlC  AzlC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   5.6   2.9e-32   1.7e-28       2     136 .]      19     154 ..      19     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 2.9e-32
        AzlC   2 illgylpvgiafGvlavqaglsvweavlmSllvfAGsaqfaavgllaagasllaivlttllvNlRhllyglslapklkklsrlkrllla.flltDetfa 99 
                 ++l+   vg+++G la + g+++w  +++S+lv AG+++f+++g++a+g+s+l+++++ llvN+Rhl++g+++++ + +  +++  ll+ +++ De+++
  EHT98219.1  19 VCLADGIVGLSYGSLALAEGFPFWVPLALSTLVLAGASEFLFIGIVAGGGSPLTAAAAGLLVNARHLPFGITVKDLVGQ--GRRG-LLGcHIMNDESVV 114
                 5778889****************************************999***************************44..5555.5555********* PP

        AzlC 100 lasar...klsrayflglglllylawvlgtllGallgsll 136
                 + +++    ++r+ f+++g+ + ++w +  ++Ga++g+++
  EHT98219.1 115 FGISQptlAQRRQAFWICGISIGVIWPVTVMAGAAIGQFI 154
                 **6555765569*************************997 PP

>> GerA  Bacillus/Clostridium GerA spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   6.8e-06     0.041     313     355 ..     154     196 ..     140     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.8e-06
        GerA 313 aasregvpfpavveallmellfelLreAgirlPkalgqaisiV 355
                 + + +++ + av+ a+l+ l+f  Lr+A +r+P + g  +s+V
  EHT98219.1 154 IPNVSAIGLDAVFPAILIALIFPALRKARTRIPAMTGAFLSLV 196
                 556677888999*****************************98 PP

>> TMEM65  Transmembrane protein 65
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3      0.13   7.7e+02      34      47 ..      68      81 ..      48     132 .. 0.65
   2 ?   12.8   0.2   1.5e-05     0.087      27      62 ..     135     170 ..     131     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
      TMEM65 34 lstlaaAalGnlvs 47
                 s l+aAa G lv 
  EHT98219.1 68 GSPLTAAAAGLLVN 81
                46777777776654 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.5e-05
      TMEM65  27 tlgvtlglstlaaAalGnlvsdvaGvvlggvveala 62 
                 ++gv+  ++++a Aa+G+++ +v+ ++l  v  a++
  EHT98219.1 135 SIGVIWPVTVMAGAAIGQFIPNVSAIGLDAVFPAIL 170
                 799*********************999988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1786.47
//
Query:       EHT98220.1  [L=106]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   47.7   9.3    1.7e-12   47.4   9.3    1.2  1  AzlD      Branched-chain amino acid transport protein (AzlD)


Domain annotation for each model (and alignments):
>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   9.3   9.5e-17   1.7e-12       2      98 ..       7     100 ..       6     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 9.5e-17
        AzlD   2 llaillmalvtyltRylplllfrrlklppwlqrllryvPiavLaaliapellaetgklsaslglarllaalvavlvalltrnlllsilvGmavyall 98 
                 ++ i+l+a++ty++R+ ++ l++rl+++++ q++l+ +++ +L a+ a++ l+e+++++   g+ar+l++ +a+++a+++  l+  il++++++all
  EHT98220.1   7 IAGIALLAAGTYAIRFAGVKLGNRLPVSERTQNMLSDAATVLLLAVAATTTLFEGQHFA---GMARVLGVGFALFLAWRRAPLIFIILGAACMTALL 100
                 67799***********************************************9*99988...****************9997666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 835.77
//
Query:       EHT98221.1  [L=314]
Description: glycine oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-37  128.0   3.3    1.8e-35  123.2   3.3    2.0  1  DAO            FAD dependent oxidoreductase
    0.00029   20.0   1.9    0.00032   19.9   1.9    1.4  1  FAD_binding_2  FAD binding domain
    0.00055   20.1   0.1     0.0018   18.5   0.0    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
       0.03   13.6   0.1      0.053   12.8   0.1    1.3  1  Thi4           Thi4 family
       0.06   13.9   0.0       0.16   12.5   0.0    1.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.14   11.8   0.1       0.24   11.1   0.1    1.4  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   3.3     6e-39   1.8e-35       4     349 ..       6     300 ..       3     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 6e-39
                 EECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS.STHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHH CS
         DAO   4 iiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl.rylpeaselarlslealeelreleeelgididyrrtGllslaadeeeleal 99 
                 + G+G+ Gl++A  La++g  V ++ +   +  +aS  ++g+l++++ ++ +++ +++++ ++a +++++  +      +++++G+l+la  +++ ++l
  EHT98221.1   6 VLGSGVSGLCIATLLAEHGekVEVITQP-NCQ-AASYWAGGMLAPWCeAESAPQ-QVVEWGQHAAAWWAARVS------GVEQQGTLVLAP-PRDSAEL 94 
                 89****************9*******97.877.************885333333.888**********87774......389*******94.4456666 PP

                 HHHHHHHHHTTTTEEEEEHHHHHHHSTTST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEE CS
         DAO 100 dkllallleagldaelldaeevrelepalp.gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavV 197
                   ++a+     l ++++ +    ++epal+ +++ +lf+p ++++dp+++++ l++++ ++Gv i+ g +                   g       ++
  EHT98221.1  95 -TRFAS---MTLAHQWVAPG---DIEPALEnRFARGLFFPAEAHLDPRQAMQQLRARLVSAGVSIHAGKPS------------------G------RII 162
                 .44444...446789****8...9***95559***********************************9332..................3......278 PP

                 E--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHS CS
         DAO 198 naaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklf 296
                  + G++++++   +   + +++vrg++l l +++e + s     p++   ++ + +y++pr++g++++G+t    ++ d+ ++++++  ell+a+  + 
  EHT98221.1 163 DCRGIHAREA---Q---PALRAVRGEMLIL-QTDEITFS----RPLR-LLHPRFPCYLVPRAQGHFMLGATM--VESQDTSPISARAMMELLSAAYSIH 247
                 8999998766...3...346**********.66664433....3666.9999*******************9..6666666****************** PP

                 GGG..CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHH CS
         DAO 297 Pql..gdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkll 349
                 P+l  +++ ++ +Glrp   d+lp +  +   +g++   G ++hG+ lap++++ l
  EHT98221.1 248 PALaeARIIESGTGLRPaYHDNLPDVRYE---NGVFSINGMYRHGFLLAPVMAEKL 300
                 **84566889*******558*******94...8********************966 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.9   1.1e-07   0.00032       4      69 ..       6      69 ..       5     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
                   EE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHH CS
  FAD_binding_2  4 ViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdt 69
                   V GsG++GL+ A+ +ae+G kv v+++ +  + a+ w++G+++ + + e++ +++ + + +h+  +
     EHT98221.1  6 VLGSGVSGLCIATLLAEHGEKVEVITQPNC-QAASYWAGGMLAPWCEAESAPQQVVE-WGQHAAAW 69
                   88************************9875.99*********999877776666644.66666655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.1e-07    0.0018       1      25 [.       6      30 ..       6      69 .. 0.91
   2 ?   -2.3   0.0       1.8   5.3e+03      11      54 ..     242     284 ..     240     290 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.1e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlll 25
                   ++G+G+sGl++A lLa++g +v+++
     EHT98221.1  6 VLGSGVSGLCIATLLAEHGEKVEVI 30
                   89********************998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                    HHHHHHCCTEEEEEE-SSSSSSGG.G-EECETTCEECTS---EEE CS
  NAD_binding_8  11 aAylLakagfdvlllekrdrlGGr.aasyevpgvrvdygahifhg 54 
                    aAy ++ a ++  ++e++++l  r a+  ++p+vr++ g+  ++g
     EHT98221.1 242 AAYSIHPALAEARIIESGTGL--RpAYHDNLPDVRYENGVFSING 284
                    566655555556666665433..3023333366666666655555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.8e-05     0.053      22      63 ..       6      46 ..       2      57 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                EE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 22 ivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                + G+G sGL  a  la++ + kv ++ +        w GG+l
  EHT98221.1  6 VLGSGVSGLCIATLLAEH-GEKVEVITQPNCQAASYWAGGML 46
                78****************.9*********************8 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.5e-05      0.16       2      29 ..       4      31 ..       3      35 .. 0.92
   2 ?   -3.4   0.0       5.2   1.6e+04      41      59 ..     136     154 ..     134     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvve 29
                + v+G+G++gl  A+ lae+g kV v+ 
  EHT98221.1  4 WSVLGSGVSGLCIATLLAEHGEKVEVIT 31
                569***********************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.2
                 HHHHHHHHHHHHTTEEEEC CS
   Pyr_redox  41 easkilqeklekngievll 59 
                 +a + l+ +l   g+ ++ 
  EHT98221.1 136 QAMQQLRARLVSAGVSIHA 154
                 6777888889999999986 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   7.9e-05      0.24       2      34 ..       5      38 ..       4      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHH CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsr.rle 34
                 +lG+G  G ++a  La++g++v +i++ + +++
  EHT98221.1  5 SVLGSGVSGLCIATLLAEHGEKVEVITQPNcQAA 38
                59*************************9996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2470.13
//
Query:       EHT98222.1  [L=65]
Description: ThiS family thiamine biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-09   36.1   0.0    9.4e-09   35.8   0.0    1.2  1  ThiS       ThiS family
     0.0032   17.2   0.0     0.0047   16.6   0.0    1.4  1  DUF348     G5-linked-Ubiquitin-like domain
  ------ inclusion threshold ------
      0.031   14.3   0.0      0.042   13.9   0.0    1.3  1  ThiS-like  ThiS-like ubiquitin


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.6e-12   9.4e-09       3      77 .]       5      65 .]       2      65 .] 0.90

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.6e-12
                ETTCCHHHHTCEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  3 lfaelrelageeelelaegstvaelleaLgerypelalerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77
                l++++ e++         + t+aelle+ g +         va a++g++vpr +++++ l ++ ++++l p++GG
  EHT98222.1  5 LNGRAIETK---------AGTLAELLEEQGIDA------GCVASALDGTFVPReRYASQLLEANCRLEVLSPMQGG 65
                555555555.........89*************......**************88********************9 PP

>> DUF348  G5-linked-Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.8e-07    0.0047      12      29 ..      10      27 ..       3      38 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.8e-07
                E----SSHHHHHHHTT-- CS
      DUF348 12 vrTaadTVgdlLeeagit 29
                + T a+T ++lLee+gi+
  EHT98222.1 10 IETKAGTLAELLEEQGID 27
                7899*************7 PP

>> ThiS-like  ThiS-like ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.1e-06     0.042       1      24 [.       1      24 [.       1      35 [. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.1e-06
   ThiS-like  1 MkIklNekeveveegttlealkek 24
                M+I lN++ +e+++gt +e l+e+
  EHT98222.1  1 MRIELNGRAIETKAGTLAELLEEQ 24
                9*****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 469.33
//
Query:       EHT98223.1  [L=252]
Description: ThiG family thiazole biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-100  336.1   0.0   1.2e-100  335.9   0.0    1.0  1  ThiG             Thiazole biosynthesis protein ThiG
    0.00049   19.6   0.0     0.0099   15.4   0.0    2.1  2  His_biosynth     Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.059   13.0   0.0       0.23   11.1   0.0    1.9  1  Glyco_trans_4_5  Glycosyl-transferase family 4
      0.079   12.1   0.0       0.29   10.3   0.0    1.9  2  NanE             Putative N-acetylmannosamine-6-phosphate epi


Domain annotation for each model (and alignments):
>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.9   0.0  2.7e-104  1.2e-100       3     247 .]       3     244 ..       1     244 [. 0.98

  Alignments for each domain:
  == domain 1  score: 335.9 bits;  conditional E-value: 2.7e-104
                 TTEEES--EEEE-STSSSHHHHHHHHHHHT-SEEEEECCGSTTTS.TTS--CCCCCHCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BCE CS
        ThiG   3 agkefksrlllGtgkykslevlkeaveasgaeivtvalrRvnleekaseeellelleekevtllPntaGaktaeeAvriarlarevletdliklEviad 101
                 ++++ +sr+llGt+ y+s+++l++av asga+i+tv+lrR+  +      ++ +ll++ + ++lPntaG++t++eAv++a++are++ t +iklEvi++
  EHT98223.1   3 YDYKGDSRFLLGTAGYPSPDILQQAVVASGADIITVSLRREGNQG----GAFRDLLNTLNKRVLPNTAGCHTVREAVTTAHMARELFATPWIKLEVIGH 97 
                 678889**********************************98777....68999999999*************************************** PP

                 TTTTEB-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-.SS-BEEES---SHHHHHHHHHTT-S CS
        ThiG 102 ektLlPdvvetlkaaeiLvkeGFevlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnkealkiiieea.kvPvivDAGigspsdaaqamelGad 199
                  +tL+Pd++ +++aa+iL++eGF+v+pY+++Dl++ ++l e+Gc+++mP++apiGsg+Gl+n   l+++++ + +vP+i+DAGig ps+aaqamelG+d
  EHT98223.1  98 ADTLQPDPFALVEAARILCAEGFHVFPYTTEDLIVGEKLLEAGCQVLMPWGAPIGSGQGLRNIDGLRTMRAWFkDVPLIIDAGIGAPSQAAQAMELGFD 196
                 ************************************************************************999************************ PP

                 EEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHH------SS-XTTST CS
        ThiG 200 avllntavaeakdpvamArafklaveaGrlaylagriekrevasassp 247
                 avllntava+++dpv+mA af+ a+++G++a+lag++e+r++a+as+p
  EHT98223.1 197 AVLLNTAVAKSHDPVRMAGAFASAIQSGHQARLAGMMERRDMAVASTP 244
                 **********************************************98 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.024   1.1e+02      97     129 ..       9      41 ..       5      82 .. 0.78
   2 !   15.4   0.0   2.2e-06    0.0099      73     113 ..     171     212 ..     153     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.024
                   SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEE CS
  His_biosynth  97 dkviigtaavknpelikelaekfgsqkivvaiD 129
                   ++  +gta   +p+++++++ + g++ i+v++ 
    EHT98223.1   9 SRFLLGTAGYPSPDILQQAVVASGADIITVSLR 41 
                   577888888888888888888888888888875 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.2e-06
                   S.SEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHH CS
  His_biosynth  73 f.ipvqvGGGIrsledveelleagadkviigtaavknpelik 113
                   + +p+ ++ GI   +++++++e+g d v ++ta++k+ + ++
    EHT98223.1 171 KdVPLIIDAGIGAPSQAAQAMELGFDAVLLNTAVAKSHDPVR 212
                   239*******************************99988765 PP

>> Glyco_trans_4_5  Glycosyl-transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     5e-05      0.23       7      83 ..      94     206 ..      91     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5e-05
  Glyco_trans_4_5   7 lishelsltGaPlvlmelatlLrsvgaevvvltlskkggllkeladrgikvlea.....................................kae 63 
                      +i h ++l   P +l+e+a +L   g++v   t ++   + ++l ++g +vl                                        ++
       EHT98223.1  94 VIGHADTLQPDPFALVEAARILCAEGFHVFPYTTEDLI-VGEKLLEAGCQVLMPwgapigsgqglrnidglrtmrawfkdvpliidagigaPSQ 186
                      6889999999***********************99999.99***********999999999999999999999999999999999999998777 PP

  Glyco_trans_4_5  64 elfklalkaDlvvlntvvaa 83 
                      ++  + l +D+v+lnt+va 
       EHT98223.1 187 AAQAMELGFDAVLLNTAVAK 206
                      77778889999999999986 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.22   9.9e+02      60     112 ..      28      81 ..      22     119 .. 0.69
   2 ?   10.3   0.0   6.5e-05      0.29     144     190 ..     172     221 ..     162     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.22
                 HHTTT-SEEEEE--SS--T.--HHHHHHHHHHH--EEEEE-SSHHHHHHHHHTT CS
        NanE  60 LaaagadiialDatdrerp.vtieelikkikekyqllmaDistleeglvakklG 112
                 ++a gadii +       +     +l+++++++ +   a + t+ e++++ ++ 
  EHT98223.1  28 VVASGADIITVSLRREGNQgGAFRDLLNTLNKRVLPNTAGCHTVREAVTTAHMA 81 
                 566677777765433333345666666666666666677777777776665554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.5e-05
                 T--EEEES---SHHHHHHHHTT--SEEEE-HHHH-HH...HHHHHHHHHT CS
        NanE 144 glkviaeGrintPekakkaieiGvdavvvGsaitrle...eiakkfveai 190
                 ++ +i++  i +P +a++a+e+G dav + +a+++ +   ++a  f++ai
  EHT98223.1 172 DVPLIIDAGIGAPSQAAQAMELGFDAVLLNTAVAKSHdpvRMAGAFASAI 221
                 5678899999***********************98541114555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1856.78
//
Query:       EHT98224.1  [L=320]
Description: ThiF family thiamine biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-48  164.0   0.0    5.1e-48  163.6   0.0    1.1  1  ThiF             ThiF family
     0.0056   16.7   0.0       0.86    9.7   0.0    2.3  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.011   16.2   0.1      0.032   14.7   0.0    1.7  2  NAD_binding_7    Putative NAD(P)-binding
      0.046   14.2   0.0      0.085   13.4   0.0    1.4  1  Rhodanese        Rhodanese-like domain
       0.12   12.6   2.3        1.6    9.0   0.9    2.5  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.0   1.4e-51   5.1e-48       1     209 [.       4     206 ..       4     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 1.4e-51
                 THHHHHH..HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlal..lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 y+rq++l  +g++gq++L++++vl+vGaGgl s ll +La++Gvg ++l D+D++ l Nl+Rq lf+ +diG+pK+ +a++al+++npd+ +e++++ +
  EHT98224.1   4 YQRQTMLpeVGDEGQQALAAARVLVVGAGGLASTLLPLLAGAGVGYIRLYDHDVVTLHNLHRQTLFTVADIGEPKVFCAQRALAQRNPDILIEPHVDAL 102
                 789988888999*************************************************************************************** PP

                 CGCCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 tdetvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplctsiagnipaiatttavv 196
                  ++   +  ++++DlV+da Dn+++ +l+ + c+ ++ipl++a++lg +g+v  +  g  + y+ l+p   + p  k   +c  +ag   ++++++a +
  EHT98224.1 103 RASI-IDTAMTGIDLVIDAADNFAVTYLLSDNCYARRIPLVSASVLGRQGYVGGFC-GGAPSYRALFP---RLP--KASGNC-NTAG---VLGPAVATL 190
                 9975.79************************************************7.89********9...555..555567.6799...********* PP

                 HHHHHHHHHHHH...T CS
                 xxxxxxxxxxxx...x RF
        ThiF 197 aglaalellkll...s 209
                 + ++a+++l +l   s
  EHT98224.1 191 GAMQAQMALSILltlS 206
                 **********996652 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00024      0.86       8      39 ..      19      50 ..      12      75 .. 0.85
   2 !    4.9   0.0    0.0072        26      12      42 ..     286     317 ..     280     320 .] 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00024
                  S..TT-EEEEES-SHHHHHHHHHHHCCT-CEE CS
  Shikimate_DH  8 eslkekkvlliGaGemaelvakhLlakgvkkv 39
                  + l+ ++vl++GaG +a+ ++  L+ +gv  +
    EHT98224.1 19 QALAAARVLVVGAGGLASTLLPLLAGAGVGYI 50
                  57899*****************9999988655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0072
                   T-EEEEE.S-SHHHHHHHHHHHCCT-CEEEEE CS
  Shikimate_DH  12 ekkvlli.GaGemaelvakhLlakgvkkvvva 42 
                   +k+++l+   G+ a ++a++L a+g+++++++
    EHT98224.1 286 DKRIVLVcASGMRAAQAAQALEARGCERLAII 317
                   4555555156999***************9885 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.9e-06     0.032       7      92 ..      23     144 ..      20     148 .. 0.72
   2 ?   -2.6   0.0       2.1   7.6e+03       7      31 ..     287     311 ..     282     319 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.9e-06
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleag.akvtvvapevkeele.....................elvklaeee.....................lekdl 59 
                      +vlvvG+G +A + +  l+ ag  ++ +++ +v   ++                     +                             ++  +
     EHT98224.1  23 AARVLVVGAGGLASTLLPLLAGAGvGYIRLYDHDVVTLHNlhrqtlftvadigepkvfcaqR-------AlaqrnpdiliephvdalrasiIDTAM 111
                    679*********************779*******8444445556556566666554444330.......233333455544444444444345669 PP

  NAD_binding_7  60 egadlviaatddrelneriaeaakarrilvnva 92 
                    +g+dlvi a d+ ++   + +++ arri++  a
     EHT98224.1 112 TGIDLVIDAADNFAVTYLLSDNCYARRIPLVSA 144
                    99**************************98665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleaga 31 
                    ++ vlv   G  Aa+ ++ l + g+
     EHT98224.1 287 KRIVLVCASGMRAAQAAQALEARGC 311
                    4556777777777777777666665 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.085      56      93 ..     271     313 ..     255     319 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
   Rhodanese  56 eellel.....gidnkktvvvycdgggraaaaaallkklGykn 93 
                 e+ll++     +   +k++v++c++g+raa+aa++l++ G+++
  EHT98224.1 271 ERLLPQdiacwQPPADKRIVLVCASGMRAAQAAQALEARGCER 313
                 4444444444444589************999999999877554 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9   0.00045       1.6       2     101 ..      27     146 ..      26     196 .. 0.68
   2 ?   -2.9   0.0       2.2   7.8e+03      25      44 ..     287     306 ..     284     316 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00045
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....................TTTCEEEEE--TTTHHHHHHHHHTTSSEEE CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.....................lgvrfeaialdaenyeavLaallkegdlvv 74 
                      l++GaG+ ++ +++lla  +     i + d +   l++l  ++                     +++++ ++    + ++++++ ++++ dlv+
       EHT98224.1  27 LVVGAGGLASTLLPLLAGAGVG--YIRLYDHDVVTLHNLHRQTlftvadigepkvfcaqralaqRNPDILIEPHVDALRASIIDTAMTGIDLVI 118
                      6666666666666666666544..566666666666666555566666666666666666666666666665555555566699999999**** PP

                      E-SSGG.GHHHHHHHHHHHT-EEEESS- CS
  Sacchrp_dh_NADP  75 nlsppi.ssldvlkaCietgvhyvdtsi 101
                      +++ ++  +  + + C+++++  v +s+
       EHT98224.1 119 DAADNFaVTYLLSDNCYARRIPLVSASV 146
                      *****98888999999999999998887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
                      GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP  25 aeitvadrskeklealaaka 44 
                      ++i++++ s  +++++a+++
       EHT98224.1 287 KRIVLVCASGMRAAQAAQAL 306
                      47888888888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2281.41
//
Query:       EHT98225.1  [L=154]
Description: histone acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-08   35.1   0.0    1.7e-08   34.7   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.6e-06   26.9   0.0    4.7e-06   26.6   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.2e-05   25.5   0.1    1.7e-05   25.1   0.1    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.044   13.8   0.0    1.7  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.9e-12   1.7e-08      10      76 .]      58     130 ..      33     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 3.9e-12
                     ETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHHTTSEEE........EEEEEETHHHHHHHHHHTTEEE CS
  Acetyltransf_7  10 ddgkivGfialslld...aeitrlaVdpeyrgkGiGraLleaaekgii........leqlelnaekaikfYeklGFee 76 
                     + ++++Gf++++ +    a+++ ++V++ey+g G+G  L+++    ++          +  l +++a  +Y+k+G+e+
      EHT98225.1  58 HHQQQIGFARFVTDYatfAYLCDVYVLEEYQGAGLGGWLITC----CQshpivdklR-RMLLFTSTAPWLYKKFGYEP 130
                     447889****9999898888888******************7....22222222221.22222224556*******95 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.1e-09   4.7e-06      29     114 ..      49     136 ..      14     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.1e-09
  Acetyltransf_10  29 gealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqe 114
                      ++ l ++++  ++ +G+++  +d     +++ ++V +ey+g G+g  L+  ++++   d+++ ++ +  +++a  +Y+k+G+++v+++ +
       EHT98225.1  49 ENSLNFGLFHHQQQIGFARFvTDYAtfaYLCDVYVLEEYQGAGLGGWLITCCQSHPIVDKLR-RMLL-FTSTAPWLYKKFGYEPVNRPDY 136
                      66778999999********999999999***************************5466555.5555.5668999**********98765 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   3.7e-09   1.7e-05      28      83 ..      46      98 ..       1     128 [. 0.68

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.7e-09
                    HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHH CS
  Acetyltransf_1 28 fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLle 83
                    +s e++  +   + ++ iGf+++  ++      ay+++++V +ey+g GlG  L++
      EHT98225.1 46 LSVENSLNFGLFHHQQQIGFARFVTDYA---TFAYLCDVYVLEEYQGAGLGGWLIT 98
                    33333333344444889***********...9********************9997 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.8e-06     0.044       2      78 ..      54     129 ..      53     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.8e-06
                 EEEEETTT--EEEEEEE-TT..SSEEEEEE-GGG-SSSHHHHHHHHH.HHHHHHS-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47   2 lGlyrkelgelaawilrkdg..gelgalqvlpehrrrGlgsrlvkal.akeiaergktvllvvvasNtpsirlyeklGfe 78 
                  Gl++++ +   a  ++ +    +l  ++vl+e ++ Glg+ l+    ++ i+ +   +ll +     ++  ly+k G+e
  EHT98225.1  54 FGLFHHQQQIGFARFVTDYAtfAYLCDVYVLEEYQGAGLGGWLITCCqSHPIVDKLRRMLLFTS----TAPWLYKKFGYE 129
                 688888777777888888774478999**************99887624556667776666664....456688888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1145.08
//
Query:       EHT98226.1  [L=200]
Description: homoserine/homoserine lactone efflux protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-25   88.6  18.6      4e-25   88.4  18.6    1.0  1  LysE      LysE type translocator
     0.0061   16.3  12.4       0.11   12.2  12.4    2.2  1  Mntp      Putative manganese efflux pump


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4  18.6   4.5e-29     4e-25       3     188 ..      15     196 ..      13     200 .] 0.94

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 4.5e-29
        LysE   3 lllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpfl 101
                 ++lspG++++l ++ ++++g++g++ +++g ++g   ++ll+ lGl++ l a++ +++ l+++Gg+yLlwlg l + +  ++k  + ++    +  +++
  EHT98226.1  15 IALSPGASFTLAMNSALTSGYRGLFKTLFGTALGIYTHALLIGLGLSTALVASSTLFTWLKIVGGVYLLWLGGLLFITGIKTKTFTLNAMD--RAVTIK 111
                 689********************************************************************98888777777777888886..788888 PP

        LysE 102 kglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavk 188
                  + l ++ NPkailf+l v+s++ ++   ++ a++l la +++v+  +w++l+++l  + +++++   ++r++n+  g+lli++av+
  EHT98226.1 112 GAWLANVINPKAILFYLTVVSQFTGD--RTDLAAFLSLATVHIVVMCLWLTLISQLLVFSAQSVNPVVLKRYVNMAGGLLLIVIAVH 196
                 89999********************6..*********************************************************97 PP

>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2  12.4   1.2e-05      0.11      17     150 ..      51     196 ..      36     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
        Mntp  17 fqalmpliGwllGkllselieavdhwiafllLlllGlkmivealkeeeeekkek............eelslksllllaiatSi...DAlavGlsLallk 100
                  +al+  +G+  + ++s+++ ++ ++++++ Ll+lG+ + + ++k+++ + ++             + ++ k++l+    +S    D       L+l  
  EHT98226.1  51 THALLIGLGLSTALVASSTLFTWLKIVGGVYLLWLGGLLFITGIKTKTFTLNAMdravtikgawlaNVINPKAILFYLTVVSQftgDRTDLAAFLSLAT 149
                 46777778999999*******************************999888887889999999999555555555544444432336555555555566 PP

        Mntp 101 vnillavlliGlvtlvlsllGlllGrklgsllgkkaeilGGliLiliGlk 150
                 v+i++ +l++ l++ +l++ +  +  +   +l+++++++GGl Li+i+++
  EHT98226.1 150 VHIVVMCLWLTLISQLLVFSAQSVNPV---VLKRYVNMAGGLLLIVIAVH 196
                 677999999999999998877665544...799**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1455.99
//
Query:       EHT98227.1  [L=124]
Description: glyoxalase/bleomycin resistance protein/dioxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-05   23.5   0.0    9.8e-05   22.5   0.0    1.5  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.029   15.2   0.0       0.16   12.8   0.0    1.9  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-08   9.8e-05       3     126 ..       3     117 ..       1     119 [. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-08
                 EEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEE CS
  Glyoxalase   3 dhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkv 101
                  h ++ ++d+e++ +FY  ++     ++ +       + +++f + +++  +v  +  + +a++      ++  ++f   + + v +++++  e+g+  
  EHT98227.1   3 SHMVVGTDDIEQAKKFYDAIFAVIACEEQG-----IDAIGRPFYSKNNQRFIVTKPINGQPATFA-----NGGTIGFAMPSSDAVFRWHQQGLENGGTS 91 
                 69999*****************99999999.....888888999999988888888888888888.....588*****************999999888 PP

                 EEEEECHHCTEEEEE.EEEETTSEEE CS
  Glyoxalase 102 vaepgrhyfgalysf.yfrDpdGill 126
                  + p +   +++  + y rDp G++l
  EHT98227.1  92 AESPPHIRETDGRCVaYLRDPTGNKL 117
                 8888776666555555********87 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.16       2     106 ..       5     119 ..       4     120 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe....paknrvHldlavedld...aevarlvalGArvlreprdgt 91 
                   +v+ ++d +++ +F+ a++ + + +e+    d+ g+    ++++++ + +  +    +  n   + +a+++ d   +  ++ ++ G++  + p + +
    EHT98227.1   5 MVVGTDDIEQAKKFYDAIFAVIACEEQ--GIDAIGRPFYSKNNQRFIVTKPINgqpaTFANGGTIGFAMPSSDavfRWHQQGLENGGTSAESPPHIR 99 
                   788899999999999999977777776..45566666666666666666655567774445555666664444223777888999999999888776 PP

  Glyoxalase_6  92 hgr.....vlaDPeGneFcv 106
                   + +      l+DP Gn  c 
    EHT98227.1 100 ETDgrcvaYLRDPTGNKLCA 119
                   666789***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 923.45
//
Query:       EHT98228.1  [L=137]
Description: hypothetical protein CKS_3049 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-20   73.2   0.0    2.6e-20   73.0   0.0    1.1  1  ASCH      ASCH domain


Domain annotation for each model (and alignments):
>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.4e-24   2.6e-20       4     107 .]      27     135 ..      18     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.4e-24
                 -TTHHHHHHTTS--EE.......EESSTTTGGGT-CEEEEEECCCCTSEEEEEEEEEEEEEEHHHHHHHHHCHCC--...-HCHHHHHHHCCHHHHHCC CS
        ASCH   4 hqelaslivsGkKtae.......irvwdeelpkvrgdllilaalkptgralgivevtkvevkpfeevteehalkege...sleewrevheefyeeesee 92 
                  +ela+l++ GkK a+       + +  ++     g+++i+  l++++++l++v++t+   ++f++vt e+a+ ege   sle+w+++h++f+++    
  EHT98228.1  27 ANELATLVLTGKKIATcsslqgwYDDDVRP---LPGGYNII--LDGEKKPLCVVRTTGLFLTRFDRVTPEMAMMEGEgdlSLEYWQREHQRFFQRN--G 118
                 466****************87555544444...789*****..****************999********************************97..3 PP

                 ..EEEEEEEEEEEEEEE CS
        ASCH  93 ..yedelvvveefelve 107
                   ++++++++e+f+lve
  EHT98228.1 119 gfSPEMELIFETFQLVE 135
                 47************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1075.30
//
Query:       EHT98229.1  [L=183]
Description: hypothetical protein CKS_3048 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0016   18.6   0.0     0.0026   18.0   0.0    1.4  1  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-07    0.0026      16     148 ..      19     162 ..      15     180 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-07
                    EEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-...........HH CS
  Thioredoxin_4  16 tvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkekeslkaamaarcageespeaflaikallysqqeewaes...........lk 100
                      +++   +Cp   + ++++ +ll+  + ++k+ + ++    + + +s   + +  +a  ++++a++a+ ++  +++e+++ +             
     EHT98229.1  19 LFEVFIEPTCPFSVRAFNKLDALLSL-VGEDKMTLKVHLQSQPWHMYSGVIVRYILAASVQGKAATKAVLQAVADHREAFEFTdhcrgpnmdttP- 112
                    55666666666666666666666665.56666666555554444444455555555555555555555555566665555555333333222221. PP

                    HHH.........HHHH..HTS-------HHHHHHHHHHHHHHT--SS-EEEETT CS
  Thioredoxin_4 101 elaae....aldkdek..feacleeekldalveaeskeakkagiestPtfiing 148
                        +     l +++     a++++++l++lv++  k a+++gi   Ptf+i g
     EHT98229.1 113 ----NqllaRLRDYSGidAYAAFDRPDLQNLVKWHCKYARQNGIHVSPTFMIYG 162
                    ....12333233322200234789***************************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1488.22
//
Query:       EHT98230.1  [L=194]
Description: putative flavin reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-14   52.5   0.0      7e-14   52.1   0.0    1.1  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   3.9e-18     7e-14       7     137 ..      20     153 ..      14     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 3.9e-18
                    E-EEEEE.EE.TTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT.CCCS CS
  Flavin_Reduct   7 pvavvttsvp.ptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees.ptga 100
                    p +++t+ +  +++++ + + +  ++ ++P+ +a+ ++++  + + ++++g f i + ++   ++a a ++ sg r++dk+  + ++ +es   g+
     EHT98230.1  20 PTVLITSRDSqSKRRNIMAAAWSLPVEFTPARMAIVVDKSTLSREIIEASGAFGICVPAAGFVDMAYAVGSTSG-RDQDKFADFAIQAHESpHYGV 114
                    77888886664444557*********************************************************.*****766688888887789* PP

                    EEE.TTCSEEEEEEEEEEECC.TTEEEEEEEEEEEEEST CS
  Flavin_Reduct 101 pal.lgalasleCqvvgsvel.gdhelfigeVvavkvgd 137
                    p+l + ++a++eC+++ + e+ +  + + geV  +  ++
     EHT98230.1 115 PLLeESCVAWMECRLLPETEAqQAYDTLFGEVITAAADS 153
                    ***88899*********9999556888889988775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1453.53
//
Query:       EHT98231.1  [L=338]
Description: Zn-dependent NAD(P)-binding alcohol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-25   89.5   2.9    2.2e-25   88.7   2.9    1.4  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.2e-21   77.1   0.0      2e-21   76.3   0.0    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    2.4e-10   41.6   0.0    3.9e-10   40.9   0.0    1.3  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    5.8e-09   35.6   0.1    9.1e-09   34.9   0.1    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    3.6e-05   23.2   0.1    5.6e-05   22.6   0.1    1.2  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0037   17.4   0.1      0.014   15.6   0.0    1.8  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0054   16.8   0.2     0.0094   16.0   0.2    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0063   15.3   0.0      0.011   14.5   0.0    1.3  1  Oxidored_nitro   Nitrogenase component 1 type Oxidoreductase
  ------ inclusion threshold ------
      0.018   14.4   0.3      0.033   13.6   0.3    1.4  1  ThiF             ThiF family
      0.023   14.9   0.2      0.039   14.2   0.2    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.19   12.4   1.2        7.3    7.2   1.0    2.3  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   2.9   1.3e-28   2.2e-25       2     108 ..      28     136 ..      27     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.3e-28
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS..--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBS CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk..lkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfae 97 
                 ++v ++v+++g+C+sDl ++++ ++   ++p++ GHE++G v+++g++ k+  lkvG+rV + ++ + c++C+ C +g++  C+++++++++ +Ggfae
  EHT98231.1  28 EDVEVEVEYCGVCHSDLSMIDN-EWGISAYPVVAGHEVIGRVAALGDSAKNkgLKVGQRVGIGWTAKsCQHCDPCISGDHVNCAQGTTTTIGNHGGFAE 125
                 689******************9.899*********************999999**********99988******************************* PP

                 EEEECGGGEEE CS
       ADH_N  98 yvvvpekklvk 108
                 ++ ++ + +++
  EHT98231.1 126 KLRANWQWVIP 136
                 ***99999887 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.2e-24     2e-21       1     127 [.     178     298 ..     178     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.2e-24
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEEH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefdl 99 
                 g+G++a+++++a+Gaev+a +sse+k +   ++Gad+v+n+   +  e++k+l g  ++d+++ +v++   ++ ++++l+p+G++ +vG++ ++ ++++
  EHT98231.1 178 GLGHIAIKILHAMGAEVTAFSSSESKKQAILDMGADHVVNS---RDPEALKALAG--QFDLIISTVAVDLDWQPYFAALAPRGKFHTVGAVLKPFDVPA 271
                 89***************************************...569*******4..9********************************999999*** PP

                 HHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N 100 rnlllkeksilGsllgslreefkealdl 127
                 + l+l ++ ++Gs  gs + +++ +l+l
  EHT98231.1 272 FSLILGDRAVTGSSTGS-PAQLRSLLKL 298
                 *****************.9999998887 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   2.4e-13   3.9e-10       1     132 [.     210     333 ..     210     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 2.4e-13
                   TT-SEEEETTSTTHHHHH-TT-EEEEEES-H.HHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfeaatggegvDvvldtvg.gealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   +GAd+v+++r++++ +a+ g ++D+++ tv+   ++ +  +++l+++G++ ++g+   ++++++ ++     + ++++    + s +a+ l+ l++l
    EHT98231.1 210 MGADHVVNSRDPEALKALAG-QFDLIISTVAvDLDW-QPYFAALAPRGKFHTVGAVLKPFDVPAFSLIL---GDRAVTGS-STGS-PAQ-LRSLLKL 298
                   59********7777678855.5*********73334.6666777788***9999843444444444433...34444444.2556.999.******* PP

                   HHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEE CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhrylesgrarGKiV 132
                        + p+v+  fp++++++A++++++g+a  ++V
    EHT98231.1 299 AGRADIAPTVE-YFPMSKINDALAHVRAGKANYRVV 333
                   **********8.8****************9976666 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   5.6e-12   9.1e-09      27     101 ..     167     240 ..     158     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.6e-12
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---B CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvli 101
                  + ++v viG G  G  Ai++ +++ga+Vt++  ++++++ + ++ga    v +++ e+l+  + + d++i+tv++
   EHT98231.1 167 AMSRVGVIGIGGLGHIAIKILHAMGAEVTAFSSSESKKQAILDMGAD-HVVNSRDPEALKALAGQFDLIISTVAV 240
                  56899******************************************.778999*******************98 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   3.5e-08   5.6e-05      35      80 ..     167     212 ..     157     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.5e-08
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   + ++vG+iG+G +G+ ++k+l+a+g++v+a++ s++k+++  ++g+
    EHT98231.1 167 AMSRVGVIGIGGLGHIAIKILHAMGAEVTAFSSSESKKQAILDMGA 212
                   5689******************************998884444444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2   1.9e+03     105     135 ..      91     120 ..      81     129 .. 0.79
   2 !   15.6   0.0   8.4e-06     0.014       1      64 [.     170     239 ..     170     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
                    HHTT-EEEEEEEESHHHHHHHT-EEEEEEE- CS
  NAD_binding_2 105 kekglkfldaPVSGGeegAekGtLsimvGGs 135
                    ++k ++  d  +SG   + ++Gt +  +G +
     EHT98231.1  91 TAKSCQHCDPCISGDHVNCAQGT-TTTIGNH 120
                    57788899999***********9.7777754 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.4e-06
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHH..HHHHHC....SEEEE-SS CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesie..elvasl....dvvitmvk 64 
                    ++g+iG+G +G+  ++ l + g +v+++  +++k +++++ ga+ + + +  e++++l    d++i  v 
     EHT98231.1 170 RVGVIGIGGLGHIAIKILHAMGAEVTAFSSSESKKQAILDMGADHVVNSRdpEALKALagqfDLIISTVA 239
                    58***************************************95443333212444444455688888776 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   5.8e-06    0.0094      11      84 ..     167     239 ..     161     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.8e-06
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SS CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisata 84 
                   + ++v +iG G +++ ++k L+a g++ v+ +  + ++ +++ +   ++ ++ ++ e lk+l  ++d++is +a
    EHT98231.1 167 AMSRVGVIGIGGLGHIAIKILHAMGAE-VTAFSSSESKKQAILDMGADHVVNSRDPEALKALAGQFDLIISTVA 239
                   5689**********************9.****************9999999*******************9875 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.7e-06     0.011     266     350 ..     162     238 ..     157     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.7e-06
                     HHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SEEEE-C CS
  Oxidored_nitro 266 yheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdlllggs 350
                     +h+ +a  rv ++g + + +  +++l+ +G+ev a ++++++++   ++     +  ++v++  d e l++l+   + dl+++++
      EHT98231.1 162 MHNITAMSRVGVIGIGGLGHIAIKILHAMGAEVTAFSSSESKKQAILDMG----A--DHVVNSRDPEALKALA--GQFDLIISTV 238
                     57788899**************************9999999665333333....3..69*******9999765..5689998876 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3     2e-05     0.033       7      42 ..     156     192 ..     149     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHHT.SEEEEE--SHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   7 llgedgqekLrd.skvllvGaGglGsellknLalsGv 42 
                 ++++  ++ + + s+v ++G+GglG++++k L ++G 
  EHT98231.1 156 VFKPLLMHNITAmSRVGVIGIGGLGHIAIKILHAMGA 192
                 57777788888779********************996 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   2.4e-05     0.039       1      76 [.     171     237 ..     171     244 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE- CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnl 76 
                      v +iG G+ G+ +++ l++ +    e+t  + s++k +a+++         + ++  ++ea L+al  + dl+++ 
       EHT98231.1 171 VGVIGIGGLGHIAIKILHAMGA---EVTAFSSSESKKQAILDM-----GADHVVNSRDPEA-LKALAGQFDLIIST 237
                      689****************987...6**********9999863.....3578889999999.***********986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0045       7.3       1      42 [.     170     207 ..     170     213 .. 0.86
   2 ?    2.7   0.0      0.11   1.9e+02      27      52 ..     214     237 ..     207     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0045
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHH CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeel 42 
                    ++g+iG G +g+  ++ l a g    e++ a s++++k +++
     EHT98231.1 170 RVGVIGIGGLGHIAIKILHAMG---AEVT-AFSSSESKKQAI 207
                    69********************...9999.778888776665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
                    CEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored  27 eivvansrnpekaeelaeelgvkvta 52 
                    ++  +nsr+pe +++la ++   +++
     EHT98231.1 214 HV--VNSRDPEALKALAGQFDLIIST 237
                    44..48***********999855544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2496.62
//
Query:       EHT98232.1  [L=175]
Description: beta-carotene hydroxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-08   35.4   7.8    1.5e-08   35.1   7.8    1.1  1  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   7.8   8.3e-13   1.5e-08       2     121 ..      11     136 ..      10     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 8.3e-13
  FA_hydroxylase   2 llallledfveYwvHr.llHrvkllwrrlHkvHHsseaptalaalrahplealllallllllllllgplsalllvlvlaallelliHsg...lhv 92 
                     ++ ++++++v  ++H+ ++H   + w   H  HH+ ++  + ++   +++ a++ ++l+++  + + pl+++ +++++  ll++++H g   +  
      EHT98232.1  11 FVTVVGMEVVAALAHKyIMHG--WGWG-WHLSHHEPRKGAFEVNDLYAVVFAIVSIALIYFGSTGIWPLQWIGAGMTAYGLLYFMVHDGlvhQ-- 100
                     6789999*************9..****.******9988877555555555555555666666667779999999***************6531.. PP

  FA_hydroxylase  93 slgwll......erllatpraHrlHHskneeg...nfg 121
                       +w        ++l++   aHr+HH+   +     fg
      EHT98232.1 101 --RWPFryiprkGYLKRLYMAHRMHHAVRGKEgcvSFG 136
                     ..3333334566889***********966533345554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1381.81
//
Query:       EHT98233.1  [L=309]
Description: phytoene synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-66  222.2   6.9      1e-65  221.9   6.9    1.0  1  SQS_PSY   Squalene/phytoene synthase


Domain annotation for each model (and alignments):
>> SQS_PSY  Squalene/phytoene synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   6.9   5.8e-70     1e-65       4     256 ..      17     271 ..      14     277 .. 0.93

  Alignments for each domain:
  == domain 1  score: 221.9 bits;  conditional E-value: 5.8e-70
                 H-HHHHHHHTTS-HHHHHHHHHHHHHHHHHT-.-----...................------------..---------THHHHHHHHHHHT--HHHH CS
     SQS_PSY   4 asksfylaslllppelRdalgalYafcreaddlvDdvs........eplqara...rldwwrdavdavyaedklkpprepvlralaqlirtyklpkell 91 
                 +sksf+ as l++ + R+++++lYa+cr++dd+ Dd++        + +   +   rl++++ +++++y   ++ ++ ep+++a+++++  +++ +++ 
  EHT98233.1  17 GSKSFATASTLFDAKTRRSVLMLYAWCRHCDDVIDDQTlgfhadqpSSQ---MpeqRLQQLEMKTRQAY---AGSQMHEPAFAAFQEVAMAHDIAPAYA 109
                 79************************************99987533233...2577*************...999************************ PP

                 HHHHHHTS--SS-..--SHHHHHHHHHHHHHHHHHHHHHHH-S.S-HHHHHHHHHHHHHHHHHHHHHT---SHHHHTT..S-HHHHHHHT--HHHHHHT CS
     SQS_PSY  92 leliegmeadleftryetlddLeeYcyrvagvVgelclrllgarrsdralaeaarrlGkalQltnilRdvpeDaergrvyLPadvlkefgvseedllrk 190
                  + +eg+++d++ try tldd  +Ycy+vagvVg+++++++g+ r++ a++++a++lG+a+Qltni+Rd++ Da+ gr+yLP+++l+e+g+++++ ++ 
  EHT98233.1 110 FDHLEGFAMDVRETRYLTLDDTLRYCYHVAGVVGLMMAQIMGV-RDN-ATLDRACDLGLAFQLTNIARDIVDDAQVGRCYLPESWLEEEGLTKANYAAP 206
                 *******************************************.666.57**********************************************877 PP

                 -.-SHHHHHHHHHHHHHHHHHHHHHHHTGGGS.-HHHHHHHHHHHHHHHHHHHHHHHTTT-.TTT-- CS
     SQS_PSY 191 gvrsaelrallrrlaerArelldearellkqlpdrrarpalllavalyrailerieaadyd.vlsrr 256
                 + + ++l + + rl+++A+ ++ +++++l+ql + r+ +a+++a ++yr+i+ ++e+a+++ +++r+
  EHT98233.1 207 E-NRQALSRIAGRLVREAEPYYVSSMAGLAQL-PLRSAWAIATAKQVYRKIGVKVEQAGKQaWDHRQ 271
                 6.6667**************************.788************************9776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.32
# Mc/sec: 2878.41
//
Query:       EHT98234.1  [L=492]
Description: phytoene dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-42  144.3   0.0    8.7e-42  143.9   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    2.9e-14   53.0   0.1    8.3e-14   51.6   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    6.6e-08   32.5   4.2    9.5e-07   28.7   1.9    2.5  2  DAO            FAD dependent oxidoreductase
    7.4e-05   22.1   0.0    0.00066   19.0   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00011   22.7   0.2       0.19   12.3   0.0    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00021   20.5   0.2    0.00059   19.0   0.1    1.8  2  FAD_binding_2  FAD binding domain
     0.0019   17.6   0.4       0.11   11.8   0.3    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
      0.007   15.1   0.0      0.051   12.3   0.1    2.0  2  HI0933_like    HI0933-like protein
     0.0084   15.4   0.1      0.014   14.6   0.1    1.3  1  FAD_binding_3  FAD binding domain
     0.0086   15.4   0.1      0.014   14.7   0.1    1.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.011   14.8   0.2      0.047   12.7   0.0    1.9  2  Lycopene_cycl  Lycopene cyclase protein
      0.092   12.7   1.6       0.37   10.8   0.5    2.5  2  NAD_binding_9  FAD-NAD(P)-binding
        0.1   11.7   0.1       0.19   10.8   0.1    1.4  1  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   6.3e-45   8.7e-42       2     451 ..      12     487 ..      11     488 .. 0.83

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 6.3e-45
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET..TTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC......... CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg..agnpllellkelgledslslpdpgapkrvlskggref......... 86 
                     GLa A +L++aG  V++lE rd +GGR++ ++ +G++++ G++++t+  a  +l++l+ +  l+d ++l   ++++r+ ++ g++f         
     EHT98234.1  12 GGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYQEQGFTFDAGPTVITDpsAIEELFALAGK-QLKDYVELLPVTPFYRLCWESGKVFnydndqaql 106
                    6************************************************************.*******888899**********98776666555 PP

                    .....TTEECHHHHHHHHHHHHHHHHCHHHHH......HHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Amino_oxidase  87 .....pgdlspvpaewealleqgalsaellsl......eeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklef 171
                         +++ ++v a+++a+l+          +      e+ l+lg  ++l       + d+ + a  l++l + ++    v +++ +++l+++++f
     EHT98234.1 107 eaqiqQFNPRDV-AGYRAFLD----------YsravfnEGYLKLGTVPFL------SFKDMLRAAPQLAKLQAWRSVYSKVAGYIEDEHLRQAFSF 185
                    533222222222.23333333..........333344599**********......**********************999*************** PP

                    HHHCHTSTTTTCBHHHHTCCCCHHHHHTSCCCEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEEETTC.EEEEETTSTEEEESEEEE-S-HHH CS
  Amino_oxidase 172 asglfagdpselsaklalpllwelegfggslllprgGlsqlpealae..elrgldirlntrVkeikregdg.vtvtledgevveaDaVvvTvplgv 264
                    +s l++g+p    a++++++l +  + + ++++prgG ++l++ + +  + +g+++ ln+rV+ +++ gd+  +v+ledg+ +e  a  v++  +v
     EHT98234.1 186 HSLLVGGNP---FATSSIYTLIHALEREWGVWFPRGGTGALVNGMIKlfQDLGGEVVLNARVSHMETVGDKiQAVQLEDGRRFETCA--VASNADV 276
                    ********9...9999999999999999999************************************55555*********876666..8888888 PP

                    HH..SSEEES.CC.SHHHHHHHHHSEEEEEEEEEEEESSGGSGCSTS..E.CE......CECCCEEETTTEEEEECC......ECCCSTTTEEE.. CS
  Amino_oxidase 265 lk..ailfsP.pl.pdekaeairnlgfgsvnkvilefdrkfwednal..g.qg......vlvseltttlgeafissd......fpsrappgkgl.. 339
                    ++  + l+s+ p   +++ +   +  + s++++++    +  +++a+    +g       ++  + ++l+e f+ +        ps ap+g g   
     EHT98234.1 277 VHtyRDLLSQhPAaAKQAKKLQSKRMSNSLFVLYFGLNHHH-DQLAHhtVcFGpryrelIHEIFNHDGLAEDFSLYLhapcvtDPSLAPEGCGSyy 371
                    88778888886553334444444449999*********999.77776675566788889999999999999999999*9**999******999996 PP

                    ..EEEEEEC.HHHHHHHTTS-HHHHHHHHHHHHHHH.HT...GTSSTCSEEEEEECCT..ETTTSSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.S CS
  Amino_oxidase 340 ..vllvyvg.gdaaneleslsdeelvqavlrdLrkl.fg...eevpepkatlvtrWht..dplargsysyvsvgpghedydplakpegdprlffAG 426
                      + + ++g ++ ++ +       l +++ ++L++  ++   +     + ++  ++++  +++ ++++s+ +  +++ +++p+++++ +++l++ G
     EHT98234.1 372 vlAPVPHLGtANLDWAV---EGPRLRDRIFDYLEQHyMPglrSQLVTHRMFTPFDFRDelNAWQGSAFSVEPILTQSAWFRPHNRDKHIDNLYLVG 464
                    44444444444444444...55556666666666552335544455566799999*999999********************************** PP

                    GGGCTTTTTS.HHHHHHHHHHHHHHH CS
  Amino_oxidase 427 ehtsreypgt.vegAilSGlraAari 451
                    + t+   pg+ ++g i S++ +A  +
     EHT98234.1 465 AGTH---PGAgIPGVIGSAKATAGLM 487
                    ****...***************9876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.1     6e-17   8.3e-14       1      64 [.       6      69 ..       6      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 6e-17
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrl 64
                   ++GaG++Gl++A +L+ ag+ vllle+rd++GGra+ y+ +g+++d g++++++++  +++++l
     EHT98234.1  6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYQEQGFTFDAGPTVITDPSAIEELFAL 69
                   8*****************************************************9866666665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.9   6.9e-10   9.5e-07       3     202 ..       5     274 ..       4     291 .. 0.60
   2 ?   -2.7   0.0       2.4   3.3e+03     309     349 ..     448     483 ..     368     485 .. 0.56

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 6.9e-10
                 EEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS.......STHHSTH....HHHHHHHHHHHHHHHHHHHHSSTTSEEE...EE CS
         DAO   3 viiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl.......rylpeas....elarlslealeelreleeelgididyrr...tG 85 
                  +iG+G  Gl+ A  L+++g  V+lle++d +g     r+     +g+                  ++ +l + a + l+++ e l +   yr    +G
  EHT98234.1   5 TVIGAGFGGLALAIRLQAAGipVLLLEQRDKPGG----RAYVYQEQGFtfdagptV-----ItdpsAIEELFALAGKQLKDYVELLPVTPFYRLcweSG 94 
                 69**************9999*************3....333222333322113331.....13333677788888888878877643322233333355 PP

                 EEEEESSHHHHHHHH...........................................................................HHHHHHHHT CS
         DAO  86 llslaadeeeleald...........................................................................kllalllea 109
                 +++ +++  ++++l+                                                                            ++++ll  
  EHT98234.1  95 KVFNYDN--DQAQLEaqiqqfnprdvagyrafldysravfnegylklgtvpflsfkdmlraapqlaklqawrsvyskvagyiedehlrqaFSFHSLL-V 190
                 5555433..1333333344555666666666666666666666666666666666666666666655555555555555444443332222333332.1 PP

                 TTTEEEEEHHHHHHHSTTST................TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEE CS
         DAO 110 gldaelldaeevrelepalp................gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgenda 192
                                                     +   ++++p +g+    +l++++ + +++lG+e++++++v + e  ++k++ v + ++g++  
  EHT98234.1 191 -------------------GgnpfatssiytlihalEREWGVWFPRGGT---GALVNGMIKLFQDLGGEVVLNARVSHMETVGDKIQAV-QLEDGRR-- 264
                 ...................02222223333333333336899****999...**************************99988888888.5555765.. PP

                 EEEEEE--GG CS
         DAO 193 adavVnaaGa 202
                 ++++ +a +a
  EHT98234.1 265 FETCAVASNA 274
                 5667777665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.4
                 EEEETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHH CS
         DAO 309 lrplpdglpligetpgvkglylatGhsghGltlapatGkll 349
                 +rp  +++  i++      l+ a  h g G+   ++++k++
  EHT98234.1 448 FRP-HNRDKHIDNL----YLVGAGTHPGAGIPGVIGSAKAT 483
                 333.2223333331....23444445666666666666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.8e-07   0.00066       4      41 ..       5      41 ..       2     107 .. 0.86
   2 ?    0.6   0.0      0.19   2.6e+02     191     228 ..     229     267 ..     220     273 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.8e-07
                 EEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  4 vviGgGpAGlaaaltlaqagakvtlvelegtclnggcl 41
                  viG+G++Gla+a++l++ag+ v+l+ +++  ++g+  
   EHT98234.1  5 TVIGAGFGGLALAIRLQAAGIPVLLL-EQRDKPGGRAY 41
                 69************************.66666666554 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.19
                  HHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 191 ealekeGvevklgtsvkeidgngekle.vvledgeeida 228
                  + +++ G ev+l+++v  ++  g+k++ v+ledg+++++
   EHT98234.1 229 KLFQDLGGEVVLNARVSHMETVGDKIQaVQLEDGRRFET 267
                  5667778899**********99999999*******9876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00014      0.19       3      36 ..       5      39 ..       3      43 .. 0.92
   2 !    7.9   0.0    0.0033       4.6      46      81 .]     227     262 ..     220     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.T CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversdkll.r 36
                +v+G+G+ gl lA  l++ g  V ++e +dk+  r
  EHT98234.1  5 TVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGgR 39
                79*****************************9844 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0033
                 HHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEETS CS
   Pyr_redox  46 lqeklekngievllntkveeiegsedgvesvklkdg 81 
                 + + ++++g ev+ln++v  +e+ +d++++v+l+dg
  EHT98234.1 227 MIKLFQDLGGEVVLNARVSHMETVGDKIQAVQLEDG 262
                 67889999************************9875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   4.3e-07   0.00059       4      36 ..       6      38 ..       4      49 .. 0.91
   2 ?   -3.7   0.0       3.3   4.5e+03     382     400 ..     448     465 ..     446     471 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.3e-07
                   EE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  4 ViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   ViG+G++GLa A++++ aG  v+++e+ ++ gg
     EHT98234.1  6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG 38
                   9**************************998777 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
                    SBESTTEEESSBTEEE-ST CS
  FAD_binding_2 382 grvldadgqpipGLYAaGe 400
                    +r+  + +++i++LY +G+
     EHT98234.1 448 FRP-HNRDKHIDNLYLVGA 465
                    677.78899******9996 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.3     8e-05      0.11       4      37 ..       6      39 ..       4      48 .. 0.95
   2 ?    3.6   0.0     0.025        34      94     129 ..     225     263 ..     201     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8e-05
  FAD_oxidored  4 VvGGgpaGvaAAiaAaraGakvlLveergvlGGl 37
                  V+G+g +G+a Ai    aG  vlL+e+r+  GG 
    EHT98234.1  6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGR 39
                  9********************************6 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.025
  FAD_oxidored  94 eeml...aeagvtvllntrlvevekegkriesvtveske 129
                   + m+   ++ g +v+ln+r++ +e+ g++i++v++e+ +
    EHT98234.1 225 NGMIklfQDLGGEVVLNARVSHMETVGDKIQAVQLEDGR 263
                   555555688899**************99*******8743 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   3.7e-05     0.051       3      36 ..       4      37 ..       2      42 .. 0.93
   2 ?    0.1   0.0      0.19   2.6e+02      96     155 ..     209     267 ..     202     271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
                 EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  3 viviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 + viG+G  Gl  Ai+++++g  Vllle+ +k+g
   EHT98234.1  4 TTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG 37
                 57*****************************998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.19
                  -STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEE CS
  HI0933_like  96 edsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeelea 155
                  ++ g  Fp+      +v+ ++k  ++ g ++ l+ +v+++e+  d++  v++++++++e+
   EHT98234.1 209 REWGVWFPRG-GTGALVNGMIKLFQDLGGEVVLNARVSHMETVGDKIQAVQLEDGRRFET 267
                  5566678887.788899999**************************99999988888775 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1     1e-05     0.014       4      35 ..       4      35 ..       2      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   + ++GaG  Gl la  L+ aG+ v+l+e+r++
     EHT98234.1  4 TTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK 35
                   579*************************9986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     1e-05     0.014       2      46 ..       6      50 ..       5      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkg.nignsiyrypkemtfi 46
                 +iGaG  Gla ai l+ ag+  +l lE+  + g   y y ++  ++
   EHT98234.1  6 VIGAGFGGLALAIRLQAAGI-PVLLLEQRdKPGGRAYVYQEQGFTF 50
                 8*******************.8*****9878888888887766555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.4e-05     0.047       4      40 ..       6      37 ..       4      54 .. 0.82
   2 ?   -0.6   0.0      0.39   5.4e+02     101     136 ..     236     271 ..     227     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-05
  Lycopene_cycl  4 viGaGpAglslAarlteakpglkvvlieaspsllfpn 40
                   viGaG  gl+lA rl  +++g+ v+l+e  +++   +
     EHT98234.1  6 VIGAGFGGLALAIRL--QAAGIPVLLLEQRDKP---G 37
                   9**************..**********998887...3 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.39
  Lycopene_cycl 101 gvklleakvesveeeeageslvvleggrkirarlvv 136
                    g   l+a+v ++e + +  + v le+gr+ +  +v 
     EHT98234.1 236 GEVVLNARVSHMETVGDKIQAVQLEDGRRFETCAVA 271
                    556789*******99999999*******98876653 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00027      0.37       2      45 ..       6      44 ..       5     141 .. 0.77
   2 ?   -0.8   0.0         1   1.4e+03     119     149 ..     239     270 ..     229     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00027
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtd 45
                   ++GaG+ Gla++ rL a       + + l ++ ++pg gr++  +
     EHT98234.1  6 VIGAGFGGLALAIRLQAA-----GIPVLLLEQrDKPG-GRAYVYQ 44
                   8**************988.....6999****977778.7777555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
  NAD_binding_9 119 vhraevvdleeradg.qavlladgaslaadaV 149
                    v++a+v  +e+ +d+ qav l+dg++++  aV
     EHT98234.1 239 VLNARVSHMETVGDKiQAVQLEDGRRFETCAV 270
                    568999999999999558999**999877665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00014      0.19       3      30 ..       5      32 ..       3      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
                EEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLith 30
                +ViG+G  G++ A+ +  +G++vlL+ +
  EHT98234.1  5 TVIGAGFGGLALAIRLQAAGIPVLLLEQ 32
                7************************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 3946.24
//
Query:       EHT98235.1  [L=382]
Description: lycopene cyclase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-93  311.8   0.0    7.5e-93  311.6   0.0    1.0  1  Lycopene_cycl  Lycopene cyclase protein
    0.00098   19.3   0.0     0.0024   18.1   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.069   12.4   0.0       0.17   11.1   0.0    1.6  2  Thi4           Thi4 family
      0.073   12.1   0.0       0.11   11.6   0.0    1.4  1  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.6   0.0   1.7e-96   7.5e-93       1     378 [.       6     373 ..       6     375 .. 0.96

  Alignments for each domain:
  == domain 1  score: 311.6 bits;  conditional E-value: 1.7e-96
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlga.....leecvehsWsgtivylddgkkillgraYgrvsskrlke 91 
                    D++++GaG+A+ ++A rl +++p+++++liea+p+   ++n++Ws+++edl+      ++ +v h W++++v++++ ++   +  Y  v+s++++ 
     EHT98235.1   6 DLILVGAGLANGLIALRLQQQHPDMRILLIEAGPEA--GGNHTWSFHEEDLTLnqhrwIAPLVVHHWPDYQVRFPQRRRHVNS-GYYCVTSRHFAG 98 
                    9***********************************..**************888899999**************99998888.9*********** PP

  Lycopene_cycl  92 ellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyGvevevdnppfdldkmvlMDfrveqklkglt 187
                     l +++   +   l+  v +v++e++      l++gr i+a++v+d+rg   ++ a+r+g+Q f G+e ++++p ++l+ +++MD++v q+ +g++
     EHT98235.1  99 ILRQQFG--QHLWLHTAVSAVHAESV-----QLADGRIIHASTVIDGRG-YTPDSALRVGFQAFIGQEWQLSAP-HGLSSPIIMDATVDQQ-NGYR 184
                    ******9..78888888888888877.....******************.99*********************9.****************.**** PP

  Lycopene_cycl 188 FlYalPldsdrllvEeTelaskpeLpadalkkrlaaylralglkvkevveeEqgviPvtlggslprleqk..vlaiGaaaglvhPaTGYsvarsla 281
                    F+Y+lPl+ + ll+E+T + +k +L+a+  ++ ++ y++ +g+  ++  +eEqg +P+tl g+ +++ q+   +  G++agl+hP+TGYs++ ++a
     EHT98235.1 185 FVYTLPLSATALLIEDTHYIDKANLQAERARQNIRDYAARQGWPLQTLLREEQGALPITLTGDNRQFWQQqpQACSGLRAGLFHPTTGYSLPLAVA 280
                    *******************************************************************999666778******************** PP

  Lycopene_cycl 282 eapllasaiaaalresslsarawatlwprerkrqreffrllglalllkldiegrrrfldaFfrlpkellqrFlasrlsladkllialslfviavnr 377
                     a+    +++a+    s s +++ ++ +++r++q++ffr+l+++l+l++  e r r++++F++lp++l++rF+a++l++ d l+i++ +++++v+ 
     EHT98235.1 281 LAD----RLSALDVFTSSSVHQTIAHFAQQRWQQQGFFRMLNRMLFLAGPAESRWRVMQRFYGLPEDLIARFYAGKLTVTDRLRILSGKPPVPVFA 372
                    ***....8999888889999*************************************************************************987 PP

  Lycopene_cycl 378 a 378
                    a
     EHT98235.1 373 A 373
                    6 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.4e-07    0.0024       2      36 ..      10      46 ..       9      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.4e-07
                   E--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  2 vGaGlsGlvaAylLaka..gfdvlllekrdrlGGraa 36
                   vGaGl+  ++A +L+++  + ++ll+e+++  GG+ +
     EHT98235.1 10 VGAGLANGLIALRLQQQhpDMRILLIEAGPEAGGNHT 46
                   9*************9977999*************965 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05      0.17      18      56 ..       5      44 ..       3      48 .. 0.83
   2 ?   -3.0   0.0      0.76   3.4e+03     100     164 ..     114     137 ..     111     142 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
                EEEEEE--SHH.HHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 18 sDvvivGaGss.GLtaayylakkpdlkvailersvspGGG 56
                 D+++vGaG + GL a +   ++pd++++++e+    GG 
  EHT98235.1  5 YDLILVGAGLAnGLIALRLQQQHPDMRILLIEAGPEAGGN 44
                599******65399888888888*********98888774 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.76
                 HHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE CS
        Thi4 100 tstllskvlqlanvkllnavaveDlivregegvaGvvinwtlvelahdtqscvDPlvirakvvvd 164
                 +s + ++ +qla+ ++++a +v                                         +d
  EHT98235.1 114 VSAVHAESVQLADGRIIHASTV-----------------------------------------ID 137
                 4555555555555555555554.........................................44 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.11       1      42 [.       6      49 ..       6     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                   SEEEE--SHHHHHHHHHHHH.TTT.-EEEEESSSGGGSGGGG-- CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae.aGl.kvavvekeqefggatawsq 42
                   D+i +G+GlA    Al++++ +   +++++e ++e gg+ +ws+
     EHT98235.1  6 DLILVGAGLANGLIALRLQQqHPDmRILLIEAGPEAGGNHTWSF 49
                   899*******999999999954446*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3072.37
//
Query:       EHT98236.1  [L=431]
Description: zeaxanthin glucosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-11   41.5   0.0    3.1e-09   36.2   0.0    2.5  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
      1e-07   32.1   0.0    1.7e-07   31.3   0.0    1.3  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    0.00042   20.8   3.8    0.00042   20.8   3.8    2.4  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    0.00061   19.8   0.1     0.0024   17.9   0.1    2.1  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   6.9e-13   3.1e-09       8     414 ..      10     390 ..       5     397 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6.9e-13
       UDPGT   8 melshwlnlkeileelvqrghevvvlrksaslllkpkkesnlkletypvsltkeeleeevlklvkklfeeasektvlkllealkeasdlleklCkevvs 106
                   +sh  +l+++ +elv+rgh v+  +++    l   + s++ ++t+   ++     +++       ++ a++    ++l+ ++e++ +   lC     
  EHT98236.1  10 PFFSHVRALQNLAQELVARGHRVTFFQQHDCKALV--TGSDIGFQTVGLQTHPPGSLSHL-------LHLAAHPLGPSMLRLINEMARTSDMLC----- 94 
                 55889999999999999999999988876655555..46777777776554444433333.......333444445677788888888888899..... PP

       UDPGT 107 nkkllkklqeskfdvvladpvlpcgellAellkiptvyllrdvpgqaaekvsGkllsppsyvpvvlselsdkmtflervkNmlinLlvdflfqllkeky 205
                  ++l +++++ + ++v++d + p+g+++Ae   +p+v +  ++p + +       ++p+ y         ++ t  e++  +l+      + +      
  EHT98236.1  95 -RELPAAFHALQIEGVIVDQMEPAGAVVAEASGLPFVSVACALPLNREPGLP-LAVMPFEYGT--SDAARERYTTSEKIYDWLMRRHDRVIAHH----- 184
                 .677888899999999999999999999999999999988888876655554.5556666543..34445677777766666655444444333..... PP

       UDPGT 206 delasevlgrpvtlaellskaevwllrsyfdlefPrpllpnv.efigglnckpakplpkeleefvqssGehGvvvfSlGsmvseipeekanaiAsaLak 303
                    a  +   p +  +   +  + + +   +l+fPr+ lp+  + +g l+ +p+   p     +  +s ++  ++ SlG++  ++     ++iA+a ++
  EHT98236.1 185 ---ACRMGLAPREKLHHCFSPLAQISQLIPELDFPRKALPDCfHAVGPLR-QPQ-GTPGSSTSYF-PSPDKPRIFASLGTLQGHRYGL-FRTIAKACEE 276
                 ...33334444444444445555555666789********8615566673.333.3344444454.44699999*******9999988.9********* PP

       UDPGT 304 ipqkvlWrfdg....kkPstLaknt..llvkWlPqndlLgHPktkAFvtHaGangvyEaisnGvPmvglPlFgdqrdNikrmeakgaavtlnvkemtse 396
                 + +++l  + g    ++ + La+     +v+++ q + L    ++  +tH+G+n+v++ai +  P+ +lPl  dq+  + r++ +g + ++  +  ts+
  EHT98236.1 277 VDAQLLLAHCGglsaTQAGELARGGdiQVVDFADQSAALSQ--AQLTITHGGMNTVLDAIASRTPLLALPLAFDQPGVASRIVYHGIGKRAS-RFTTSH 372
                 *****99998888889999999977769***********85..6678*************************************99887765.566899 PP

       UDPGT 397 dllnAlkevindksyken 414
                  l+  +++++ +  y + 
  EHT98236.1 373 ALARQIRSLLTNTDYPQR 390
                 999999999999988765 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.9e-11   1.7e-07      49     158 ..     296     398 ..     266     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 3.9e-11
                      T-TTTTCEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHC CS
  Glyco_tran_28_C  49 kveeltlkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallela 142
                      ++++ + +++v++f+d  ++a+++a+L I+++G +t++++ a   pl+  pl      +q   a  ++ +g +      ++  + L+ +++ l+
       EHT98236.1 296 ELARGG-DIQVVDFAD-QSAALSQAQLTITHGGMNTVLDAIASRTPLLALPLAF----DQPGVASRIVYHGIGKRASRFTT-SHALARQIRSLL 382
                      344443.799******.999**********************************....*************9998888877.9*********** PP

                      CS---S---SSCH..C CS
  Glyco_tran_28_C 143 aeklrlaekskasaas 158
                      ++ + +++++k +aa 
       EHT98236.1 383 TNTDYPQRMTKIQAAL 398
                      ********99998544 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   3.8   9.5e-08   0.00042       6     137 ..      17     184 ..      14     194 .. 0.59
   2 ?    1.2   0.1       0.1   4.6e+02      66     103 ..     273     309 ..     225     395 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 9.5e-08
  Glyco_trans_4_4   6 yvaelaraLaarGheVtvltpapapg............apeleedgvrvhrlpvprrpspladlaal...ralrrll.rqrrerpdvvhahspt 83 
                        ++la++L+arGh+Vt + +++  +              + + +g   h l + ++p ++ +l+ +   ++  ++l r     ++ +++++  
       EHT98236.1  17 ALQNLAQELVARGHRVTFFQQHDCKAlvtgsdigfqtvGLQTHPPGSLSHLLHLAAHPLGPSMLRLInemARTSDMLcRELPAAFHALQIEGVI 110
                      5799****************98888866665554444322233344444455566666667777766333333334566666666666666633 PP

  Glyco_trans_4_4  84 ...aglaarlarrrrgiplvvtlh.............glllrrg.sgavrrlyraler...rllrradavlvvs 137
                           +a+++ + + g+p+v  +                 +++g s a+r  y++ e+   +l+rr d+v++ +
       EHT98236.1 111 vdqMEPAGAVVAEASGLPFVSVACalplnrepglplaVMPFEYGtSDAARERYTTSEKiydWLMRRHDRVIAHH 184
                      24433444444437788888888744444433322211225566666666666444444449999999999876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
  Glyco_trans_4_4  66 llrqrrerpdvvhahs..ptaglaarlarrrrgiplvvtl 103
                      ++  ++    ++ ah+  + a +a++lar + +i +v  +
       EHT98236.1 273 AC--EEVDAQLLLAHCggLSATQAGELAR-GGDIQVVDFA 309
                      33..5666666666764244778888888.7777766444 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   5.5e-07    0.0024       6     151 ..      16     176 ..      14     185 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.5e-07
  Glyco_transf_4   6 rhvleLaraLarrGheVtvvtpgddgpleeev.......................elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvH 77 
                     r + +La++L +rGh+Vt++ ++d ++l                                +p+  +++++ ++ s    r l +++++ ++  v 
      EHT98236.1  16 RALQNLAQELVARGHRVTFFQQHDCKALVTGSdigfqtvglqthppgslshllhlAAHPLGPSMLRLINEMARTSDMLCRELPAAFHALQIEGVI 110
                     6788****************666666666666666666778888888555443333333333333334444444444456777778888**9999 PP

  Glyco_transf_4  78 ahspaalgaallalrrrlgiplVltvHglye.............krllkarlkplsrllralerrllrradrviavSeatadelrer 151
                     + +  ++ga+++ +    g+p+V  +  l                                  + + ++a+   ++Se++ d+l++r
      EHT98236.1 111 VDQMEPAGAVVAEAS---GLPFVSVACALPLnrepglplavmpfE------------------YGTSDAARERYTTSEKIYDWLMRR 176
                     999999998877666...9****9999999544444444444442..................444555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3094.94
//
Query:       EHT98237.1  [L=303]
Description: polyprenyl synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-43  146.3   0.2    1.1e-42  145.9   0.2    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.2   6.2e-47   1.1e-42       8     225 ..      44     259 ..      38     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 6.2e-47
                      HHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHH..HTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   8 leylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDi..mDdsetRRGqpcahrlvGnklAindgdfllarafella 99 
                      ++  + a+GKr+Rp+l+ll+a+ l+    ++  +++la++ve++haasL++DD+  mDd+++RRG+p++h ++G+++Ai+++ +ll++af ++a
       EHT98237.1  44 MREGTLAPGKRIRPMLLLLTARDLGCAI-SHGGLLDLACAVEMVHAASLILDDMpcMDDAQMRRGRPTIHTQYGEHVAILAAVALLSKAFGVIA 136
                      5555669******************664.45889************************************************************ PP

                      HHH....STTHHHHHHHHHHHH..HHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt 100 klf....ekslellelfsevll..qtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaF 187
                      +        ++++++ +s+++    +v+Gq+ dl+e  d+     s +  l   + KT+ lf +++++a ++a+as e+ e+l+++ l lG aF
       EHT98237.1 137 EAEgltpIAKTRAVSELSTAIGmqGLVQGQFKDLSEG-DKPR---SADAILLTNQFKTSTLFCASTQMASIAANASCEARENLHRFSLDLGQAF 226
                      9999877444566766666665568*********655.3444...48****************************8899*************** PP

                      HHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHH CS
  polyprenyl_synt 188 QiqDDylDlfgdpevlgKpagtDiqegkctlpilkale 225
                      Q+ DD+ D ++d   +gK++ +D   gk tl+ l    
       EHT98237.1 227 QLLDDLTDGMTD---TGKDINQDA--GKSTLVNLLGSG 259
                      ********9966...899987774..666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2166.56
//
Query:       EHT98238.1  [L=182]
Description: hypothetical protein CKS_3040 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-56  187.9   0.0      1e-55  187.8   0.0    1.0  1  YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI00


Domain annotation for each model (and alignments):
>> YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI0045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.0   5.7e-60     1e-55       2     158 ..      22     178 ..      21     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 5.7e-60
  YtfJ_HI0045   2 elgqkvpsvevadkgelvlkedkvsykaWnssqlaGkvrviqhiaGrssakelnaalieaikaakfdrdkyqtttiinaddaivgtgvfvkssledsk 99 
                  ++g+ vp+v+vadkge++l++++++y+ Wns++l+Gk r++ h+aGr sake+ a li+ai++a+++++ +qttti+n+dda+ g+++fv +s+++sk
   EHT98238.1  22 TMGKPVPAVSVADKGEMQLRNGQIHYQTWNSQSLTGKARLLIHVAGRLSAKEQSAGLISAIQQASLPENTFQTTTIVNTDDALPGSSIFVVNSIRASK 119
                  67999********************************************************************************************* PP

  YtfJ_HI0045 100 kefpwsqlvlDekgvvkkaWdLkeessaiivldkeGkvkfvkeGaLsekevkqvielik 158
                  k+ pw q+++D++g +++ W+Lk+  +a ivld +G+v+f+k+  Ls++++ q+i+l++
   EHT98238.1 120 KASPWQQFIIDSSGLARHRWQLKPGGAAAIVLDAQGNVQFAKDTPLSADDISQIISLLR 178
                  *********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1347.68
//
Query:       EHT98239.1  [L=72]
Description: hypothetical protein CKS_3039 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00035   20.7   0.0    0.00068   19.8   0.0    1.5  2  HTH_17    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.08   13.3   0.0       0.13   12.6   0.0    1.5  1  ANT       Phage antirepressor protein KilAC domain


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.5e-08   0.00068       1      27 [.       5      32 ..       5      40 .. 0.89
   2 ?   -2.7   0.0      0.78     7e+03      40      42 ..      53      55 ..      49      62 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.5e-08
      HTH_17  1 lltveEaAelLgvsrst.vyrlirrgel 27
                ++t  E+A +Lg+s+++ v+ l++rg l
  EHT98239.1  5 FMTLPEMATYLGISQTSlVRALCNRGAL 32
                69***************5557*****87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.78
      HTH_17 40 rsd 42
                r+d
  EHT98239.1 53 RED 55
                334 PP

>> ANT  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05      0.13      24      52 ..       6      34 ..       2      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
         ANT 24 ititeiAkllgigenrlfelLrekgilyr 52
                +t+ e+A  lgi+++ l++ L+++g ly 
  EHT98239.1  6 MTLPEMATYLGISQTSLVRALCNRGALYG 34
                78899**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 592.77
//
Query:       EHT98240.1  [L=575]
Description: iron-uptake factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-65  220.7  10.2    3.2e-65  220.7  10.2    1.7  2  PepSY_TM  PepSY-associated TM region
    9.2e-33  112.3   5.3    2.7e-32  110.8   5.3    1.8  1  DUF2534   Protein of unknown function (DUF2534)
  ------ inclusion threshold ------
       0.01   16.4   0.0      0.033   14.7   0.0    1.8  2  PepSY     Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.7  10.2   5.4e-69   3.2e-65       1     288 []      20     406 ..      20     406 .. 0.82
   2 ?   -3.0   0.6      0.77   4.6e+03     263     263 ..     505     505 ..     440     531 .. 0.62

  Alignments for each domain:
  == domain 1  score: 220.7 bits;  conditional E-value: 5.4e-69
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
    PepSY_TM   1 lrlHlwlGLivglfllvlalTGallvfkpeieawlnpellvvapaaaaallaa..........eaaaaaaaaaaaaaaaaatavvrtaa.......... 79 
                 +rlH+++GL++++f++++alTG+l+v  p+ie++++++ l+++p +a+++l+a          +               a+  +vr+a+          
  EHT98240.1  20 RRLHFYIGLFIAPFIFIAALTGTLYVLTPQIENVIYKDALTAEPVGATQPLSAqiaaarryvgD---------------ARIYAVRPAPgahdttrvqf 103
                 69************************************************97656555444331...............33333333334444444555 PP

                 .......xxxxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM  80 .......gekrsvfvdpytgevlger..sgesa.safaeflrrlHrglllgkpvGrllvglaallllvllvsGlilwwprrkkkrfftfrpkkgrrfwl 168
                        +e+rsvf+dpyt +v g++  +g+s+  +++ +l+++Hrglllg+  Gr +++laa++l+v+++ G++lw  +r ++  ++ r+++   +++
  EHT98240.1 104 tdaqsgpSESRSVFIDPYTLRVKGDMtvYGTSGvLPLRMWLDQMHRGLLLGDV-GRNYSELAASWLWVAALGGIVLWSGTRPRR-QVKTRKTG-FALTR 199
                 66677899****************996644444799999************99.***********************7766664.44444444.9**** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxx...................... RF
    PepSY_TM 169 dlHnvlGvwllpfllllalTGlvwslaavlgaavkalvseg................aaaaaaaaaaaaaaaaaaaa...................... 229
                  +H +lG++l+++l+++++TGl+ws  +++g+++ +++s+                 +         a+a+++a  +                      
  EHT98240.1 200 YWHITLGLVLSLGLIFFSVTGLTWS--QWAGSNIDKMRSDLgwltpqvrtalngaapS---------APADPHA--Dhhsdmdgmvmetsmpghhasmp 285
                 ************************9..888********99999988776544322110.........1111111..12244567788999999999*** PP

                 ...................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 230 ...................................................................edladaslgdqslgakllewlypLHfGtffGl 261
                                                                                    +++a       +l+akl++w+++ H+G +fGl
  EHT98240.1 286 avfnqpdadwdsvehaarlaglhaakielrqpknpdqawtvseidrrwptqvdsvsvnphdfsivdhVEFAR-----FPLVAKLTRWGVDAHMGVLFGL 379
                 ********************************************************9999975543333333.....5677****************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 262 plrillfllglalaalivtGlvlWlkr 288
                 p+++ll+++g++l+a+iv G+++W+ r
  EHT98240.1 380 PNQLLLAFFGFGLCAMIVLGYRMWWIR 406
                 *************************87 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.77
                 x RF
    PepSY_TM 263 l 263
                 +
  EHT98240.1 505 V 505
                 1 PP

>> DUF2534  Protein of unknown function (DUF2534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   5.3   4.5e-36   2.7e-32       3      79 ..     493     569 ..     491     570 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 4.5e-36
     DUF2534   3 lkskegkkfllallivfivalsvvsratigGvidqYnlPlseWttsmfliqgamvavYslvftvllsiPlafyfLge 79 
                 +k+ke+++fl++++i++i++++v++ra++ Gvi+qYn+P+s+Wt+ m+++q+ m+++Y++vft l+siPl+++fLge
  EHT98240.1 493 VKRKEMRYFLRSVAILAIIVGTVMARAMVSGVIEQYNIPFSDWTAMMYITQALMILLYTTVFTGLMSIPLWYFFLGE 569
                 89*************************************************************************97 PP

>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.5e-06     0.033       6      59 ..      72     125 ..      68     128 .. 0.90
   2 ?   -2.7   0.0       1.5     9e+03      22      39 ..     312     329 ..     305     339 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEE....EE.TTEEEEEEEETTT--E CS
       PepSY   6 qAlaiAlaavpgkiieielededdgrlvYevelst...aepegpeyevfiDAkTGkv 59 
                   +a+A++ v++++i+++++   +++   +v++++   +++e ++++  iD++T  v
  EHT98240.1  72 AQIAAARRYVGDARIYAVRPAP-GAHDTTRVQFTDaqsGPSESRSVF--IDPYTLRV 125
                 56999*****************.***********9998888888888..*****876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 EEEEEEETTEEEEEEEEE CS
       PepSY  22 ielededdgrlvYevels 39 
                 iel + ++++ ++ v+ +
  EHT98240.1 312 IELRQPKNPDQAWTVSEI 329
                 555555577777777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4374.90
//
Query:       EHT98241.1  [L=141]
Description: hypothetical protein CKS_3037 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-15   57.2   8.1    2.8e-15   57.0   8.1    1.1  1  DUF2946   Protein of unknown function (DUF2946)


Domain annotation for each model (and alignments):
>> DUF2946  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   8.1   1.6e-19   2.8e-15       1     115 []      14     134 ..      14     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.6e-19
     DUF2946   1 awlallAvllavlaPavsq.aaaaaaaasllagaicsadgs...aysaaytaagagspasamdse.aCgyCsllaagphlmpslsaslleaaesasaaa 94 
                 a+la+lAvll+++aP+vs   a +++a++++++++ + + +   a +++ +++++   +++++++ aCgyC ll + p + +   ++++++   ++a++
  EHT98241.1  14 ACLAILAVLLLFIAPMVSKnLAENRDAMAMSDMSMLDQHNDmimADMPMGDHHSDMAMGDHSMMMsACGYCDLLVHIPFMLWVFIPFIWLMCLISRAPP 112
                 789****************86666777777777777777778997777777777776666666666********************************* PP

     DUF2946  95 aargaapalpallpaar.RAPP 115
                  +    p lp+  +  r RAPP
  EHT98241.1 113 TPDTFCPLLPRHKRVYRqRAPP 134
                 **9999888877776668***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1071.43
//
Query:       EHT98242.1  [L=313]
Description: glycerate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-55  187.7   0.0    1.6e-55  187.2   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
    3.6e-22   78.5   0.0    4.5e-22   78.1   0.0    1.0  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
       0.05   14.1   0.0      0.087   13.3   0.0    1.5  1  XdhC_C        XdhC Rossmann domain
       0.13   12.8   0.1       0.23   12.1   0.1    1.4  1  Pyr_redox     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   0.0   3.6e-59   1.6e-55       2     178 .]     105     282 ..     104     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 187.2 bits;  conditional E-value: 3.6e-59
                   HHHHHHHTTHHHHHHHHHTTCC..HTTC....CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregew..ksek....allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaes 92 
                   a+++al r++ e+ + +re  w  + ++    + ++++++g t+Gi+G G+IG av ++++a+gmkv + +r+ +++     ++  +vs++e+la s
    EHT98242.1 105 AFIFALRRQIVEYATLTREV-WpaS-SHfcfhRSPIQDIAGATLGIVGKGDIGIAVGRLAQALGMKVCFAERRDSTR-----VREGYVSFDEMLAAS 194
                   7899*********9999988.8642.22344366778***********************************96632.....33368********** PP

                   SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHH..HHSTTEEE-SS-T CS
  2-Hacid_dh_C  93 DivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspl..lelpnviltPHia 178
                   D++slh+pl+++trhlin+e+l+km+++a+liNtaRGgl++e++L+eaL++g+iagaalDv+++ep+p+d+pl  +++pn+++tPHia
    EHT98242.1 195 DVISLHCPLSEQTRHLINSETLNKMQPHALLINTARGGLIHEADLAEALQQGTIAGAALDVLSSEPPPADHPLlqADVPNLLVTPHIA 282
                   *************************************************************************66669*********8 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0     1e-25   4.5e-22      25     133 ..      27     312 ..      18     313 .] 0.97

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1e-25
                 ESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
  2-Hacid_dh  25 kdellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt..................... 102
                 ++e  ++e++e++k+a + i+++   + a++l++lp+L++i+  ++G+D +D++a++erGi+V+n+pgyst+sv E++                     
  EHT98242.1  27 REETHDNEIIEALKGATIAITNKVP-LRAATLAQLPDLRYICVTATGFDCIDIPACRERGIVVSNIPGYSTQSVSECViafifalrrqiveyatltrev 124
                 45667789***************98.************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  EHT98242.1 125 wpasshfcfhrspiqdiagatlgivgkgdigiavgrlaqalgmkvcfaerrdstrvregyvsfdemlaasdvislhcplseqtrhlinsetlnkmqpha 223
                 *************************************************************************************************** PP

                 ...........................................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 ...........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...........................................................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                                                            +a++  ++n+ + ++ nl  f ++ +p n+v
  EHT98242.1 224 llintarggliheadlaealqqgtiagaaldvlssepppadhpllqadvpnllvtphiaWASKSGMHNLLQGIMVNLAGFEQN-RPVNVV 312
                 ******************************************************************************99998.666666 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.087       2      44 ..     147     189 ..     146     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade 44 
                  i+G+g+++ a+ rla+alg++v+ ++ r++++ +e + + de
  EHT98242.1 147 GIVGKGDIGIAVGRLAQALGMKVCFAERRDSTRVREGYVSFDE 189
                 69***************************98775555544444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.1e-05      0.23       3      35 ..     147     179 ..     145     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversdkll 35 
                  +vG G+ig+ ++  +++lg kV   er+d  +
  EHT98242.1 147 GIVGKGDIGIAVGRLAQALGMKVCFAERRDSTR 179
                 69***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2377.07
//
Query:       EHT98243.1  [L=306]
Description: putative glutaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.3e-112  375.7   0.0   1.5e-112  375.5   0.0    1.0  1  Glutaminase  Glutaminase


Domain annotation for each model (and alignments):
>> Glutaminase  Glutaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.5   0.0  8.2e-117  1.5e-112       1     286 []      23     306 .]      23     306 .] 0.98

  Alignments for each domain:
  == domain 1  score: 375.5 bits;  conditional E-value: 8.2e-117
                  SB--SSSHHHCTS-TT--EEEEEETTSEEEEEESTT--EE-GGGHHHHHHHHHHHHH-HHHHHCCC-S---SS-TT-HHHHHCTTT--C-TTSHHHHH CS
  Glutaminase   1 GkvadyipeLakvdpdkfgiavvtvdgqvlsaGdaevkFtiqSiskvftlalaleelgeeevlervgvepsgeafnsivqleeekgkprNpminaGAi 98 
                  Gkvadyip+La+v +d++giav+  dg+v++aGdae++F+iqSiskv++l++al+++++ e+++rvg+epsg++fns+vqle e+gkprNp+inaGA+
   EHT98243.1  23 GKVADYIPALADVAADHLGIAVCLRDGTVFQAGDAETRFSIQSISKVLSLTVALTRYEDAEIWQRVGKEPSGQPFNSLVQLELEQGKPRNPFINAGAL 120
                  9************************************************************************************************* PP

                  HHHHHSSSSSHHHHHHHHHHHHHHHHST.T-EE-HHHHHHHHCC-HHHHHHHHHHHHCT--SS-HHHHHHHHHHHCTEEE-HHHHHHHHHHHHTTTEE CS
  Glutaminase  99 vvasllkgesaeerferileflrklagreklsldeevakseketadrnralayllkskgvleedveevldlYfqqcsievtcedlavlaatlangGvn 196
                  v+++ll++ + ++  +r+le++r+l++++++++d++va+se e++ rn+a+a+l+ks+g++++dv++v+++Yf+ cs++++c +la+ +++lan+G +
   EHT98243.1 121 VICDLLET-RLTAPRQRMLEIIRQLSQQPDIQYDRHVARSEFEHSARNAAIAWLMKSFGNFDNDVTNVMQTYFHYCSLSMNCIELARSFIYLANQGKT 217
                  ****9887.455567********************************************************************************987 PP

                  TTTTEE-S-HHHHHHHHHHHHHHTTGGGHHHHHHHT-S-EEE-TTSEEEEEETTTCEEEEE-S-B-TTSSBHHHHHHHHHHHHHHT--TT CS
  Glutaminase 197 pltgervlskesvrrvlalmltcGmYdasgefavkvGlPaKSGVsGgilavvpgklgiavfSPrLdekgnSvrGvklleelseelnlsiF 286
                   l+g+ +++++++r+++alm+t GmYd +gefa++vG+PaKSGV+Ggi+avvpg+++iav+SP Ld++gnS++G+++le l+++l+ siF
   EHT98243.1 218 -LDGSALITSRQARQINALMITSGMYDGAGEFAWRVGMPAKSGVGGGIIAVVPGEMSIAVWSPGLDSAGNSLAGTAALECLTDRLGRSIF 306
                  .69***********************************************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2193.64
//
Query:       EHT98244.1  [L=464]
Description: chloride channel, voltage-gated [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-92  310.5  35.1      3e-91  306.3  28.2    2.0  2  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.3   1.1e-05      0.19     159     220 ..      29      94 ..       5      96 .. 0.76
   2 !  306.3  28.2   1.7e-95     3e-91       3     352 ..      88     434 ..      86     436 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.1e-05
                  --GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH.CHHHH...HHHHHHHHHHHHHHHCCCS CS
  Voltage_CLC 159 lsllelilfvllGilgGllgalfvrlllkverlfrkle.klkik...krlepalvgllvgllglll 220
                   +   l++++l+G+l Gl +++f + + +v + + ++  ++  +     ++++++++++++ g++l
   EHT98244.1  29 TPAALLLMAALVGVLTGLTAVAFDKAVGWVIHSRVNWLsQHENNvflLGCYAFIFSAVLAATGYFL 94 
                  56778999******************9999886666655555554223347888888888888876 PP

  == domain 2  score: 306.3 bits;  conditional E-value: 1.7e-95
                  HHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHHHHHHHHHHHHH CS
  Voltage_CLC   3 gllagllvklvapeaagsGipevkaalngvkgplslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrrlvaaGaAAGiA 100
                  ++   +lv+++apea gsGipe+++al++ +   ++rvl+vkf++++ ++gsG+ lGreGp+vqiG+ +g +  +++++++++++++++a+GaA+G+A
   EHT98244.1  88 AATGYFLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFFGGLGAIGSGMVLGREGPTVQIGGNIGRMCLDIFRMRSSESRHTILATGAASGLA 185
                  5566789************************99**********************************************99998888*********** PP

                  HHHT-HHHHHHHHCTTTSTSS--..TTHHHHHHHHHHHHHHHHHHCTTS-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH CS
  Voltage_CLC 101 AaFnaPlgGvlfalEevsrefsl..rallpvfvasvvaalvlrlllgeepafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkle 196
                  AaFnaPl+G+lf++Ee++ +f++   ++ +vfv + ++++v+ +l+g++p+++ + +l++ +++ l+l++llGil+G +g++f+rl  +++ lf++l+
   EHT98244.1 186 AAFNAPLAGILFIIEEMRLQFRFslISIKAVFVGVSTSSIVFLALNGNQPIIN-IGQLKDAPIQTLWLYLLLGILFGGCGVAFNRLIFTLQDLFQRLH 282
                  ****************99888775577899*********************99.999999*************************************9 PP

                  CHHHHHHH.HHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 197 klkikkrl.epalvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvlall 293
                  + +++ ++   a++g l gllgl+lp+  + gg +li ++ +g+   ++ ++ll l+ll+ ++t+l+++sg+pgGifaP+L++G++lG +vg+++  l
   EHT98244.1 283 QGRTSRWVlGGAILGGLCGLLGLILPQ-GVTGGITLIPDFTAGN---YTSIALLSLFLLRAVVTLLCFASGAPGGIFAPMLTLGTLLGTCVGQLCVNL 376
                  88788666699***************9.6788888********9...899999***************************************999999 PP

                  -CTSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHH CS
  Voltage_CLC 294 lpgaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkava 352
                  +p  a + + ++fa++Gm+a++a+ +raplt i++v+E+t++++l+lp+++++l A++ a
   EHT98244.1 377 FP--AYHlEAATFAVAGMGALFAASVRAPLTGIILVLEMTNNYQLILPMIITCLGATLSA 434
                  99..344488*********************************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3204.29
//
Query:       EHT98245.1  [L=57]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-24   85.2   6.8    2.9e-24   85.1   6.8    1.0  1  Toxin_GhoT_OrtT  Toxin GhoT_OrtT
  ------ inclusion threshold ------
       0.11   12.7   1.9       0.13   12.5   1.9    1.1  1  DUF3938          Protein of unknown function (DUF3938)


Domain annotation for each model (and alignments):
>> Toxin_GhoT_OrtT  Toxin GhoT_OrtT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   6.8   3.2e-28   2.9e-24       1      55 []       4      57 .]       4      57 .] 0.99

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 3.2e-28
  Toxin_GhoT_OrtT  1 welilviYaiglvisvlitfflskdpslkirLLsalliglTWPlSfPvvllfslf 55
                     ++++lv+Y + +++++litff+++d +l+i+LLsa+l+g+TWP+SfPv+l+f+lf
       EHT98245.1  4 YQHMLVFYGVVAFVAALITFFIARD-KLSIKLLSAFLVGATWPMSFPVALMFALF 57
                     89***********************.****************************9 PP

>> DUF3938  Protein of unknown function (DUF3938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.9   1.5e-05      0.13      40      88 ..       9      56 ..       3      57 .] 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
     DUF3938 40 vlltmigivggclsysitnyalvlqlssaffhglwawfiafcladvfnl 88
                v+  ++  v   +++ i+   l+++l saf+ g  +w ++f +a +f l
  EHT98245.1  9 VFYGVVAFVAALITFFIARDKLSIKLLSAFLVGA-TWPMSFPVALMFAL 56
                445678889999********************95.9***********88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 425.37
//
Query:       EHT98246.1  [L=178]
Description: hypothetical protein CKS_3031 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-30  104.8   0.0    5.2e-30  104.5   0.0    1.1  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   2.9e-34   5.2e-30       6     132 .]      36     175 ..      31     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 2.9e-34
                 G..........CSBGGS-EEEEES--TTSSEEEEEEEETTSCCTCTTEEEEEEEEEETTSSEE-TTC.......EE-B-TTSSCCCCS---B--STTS. CS
         PBP   6 y..........egentsPplswsdvpegtksyalvviDpDapkvsetflHwvvtnipasvtslpega.......vqgknslgeesesgYlgpcPpkgdg 87 
                 +          +g+n+sP+l+ws++p+gtks+al+++Dp   k  + ++H+v++ni a+++++++g+       + gkns g+   ++Y+gpcPp g+g
  EHT98246.1  36 FagadkskpacTGQNVSPELNWSETPAGTKSFALLMTDPVGAKGLG-VTHMVAYNIAAERSAFAQGEltqgkgyTGGKNSPGT---AHYYGPCPPVGSG 130
                 4455555566689***************************997777.******************999666666666666666...8************ PP

                 .EEEEEEEEEESSSG--BGSS-SHHHHHHHHCTTEEEEEEEEEEE CS
         PBP  88 kHrYvfllyaldvealdlkagftraelgaaiaghvlakatlagnY 132
                  H+Y f+l+a d++  +l+ag t ++l  +++gh+la+a+ ++ +
  EHT98246.1 131 LHHYNFVLIATDLPPSALEAGLTHDQLLSKLKGHALAAASTVARF 175
                 **************988****999***************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1427.07
//
Query:       EHT98247.1  [L=491]
Description: L-proline/glycine betaine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-48  163.4  32.2    1.6e-34  119.6   9.9    2.0  2  Sugar_tr  Sugar (and other) transporter
      4e-45  154.3  66.8    9.1e-38  130.1  39.5    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.087   12.9   3.7        1.2    9.3   0.1    2.8  2  Hol_Tox   Putative Holin-like Toxin (Hol-Tox)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   9.9   2.7e-38   1.6e-34       5     210 ..      43     253 ..      39     258 .. 0.93
   2 !   56.0  11.6   5.1e-19     3e-15     232     445 ..     246     456 ..     241     461 .. 0.85

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 2.7e-38
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.... CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.... 99 
                 aalg  ++++d+gv+++ + +++++++  ++++ +  +     +  +++++++++ +G++++g+lgdr+GR+k+l+i+ ++++ig++++++++++    
  EHT98247.1  43 AALGNAMEWFDFGVYSYLAVIIGKVFFPDANNAIQLIA-----TFGTFAAAFLVRPLGGMVFGPLGDRIGRQKVLAITMIMMSIGTFCIGIIPSYasig 136
                 89999******************999999999997544.....57777788889***************************************999999 PP

                 .SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-....TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 100 .nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn....adgwrillglqlvpallllilllflP 192
                   +  +l+v+R++ G++ G++++ + ++i+E++++k+Rg+++s+ ++++  G l++a++ +++ + +s+    ++gwr+++++++ + l+ l+++l l+
  EHT98247.1 137 iMAPILLLVARLVQGFSTGGEYGGAATFIAEYSTDKHRGFMGSFLEFGTLGGYLLGACLVTVMtSVISSeammSWGWRVPFFIAAPLGLFGLYVRLKLE 235
                 999999*****************************************************99997777779***************************** PP

                 --HHHHHHTT-HHHHHHH CS
    Sugar_tr 193 ESPrylvekgkeeeakev 210
                 E+P +  + +k+ee +++
  EHT98247.1 236 ETPAFKQHMQKQEELEQS 253
                 ******999999876655 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 5.1e-19
                 HHHHH.....HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHH CS
    Sugar_tr 232 eaeqeeekaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagm 327
                 ++e+ e+++   +l+++ + +r +++ +++l ++ +++ ++   y++++++  lgl +   ll  ++v++v +  t+++    dr+GRR++  +Ga+g 
  EHT98247.1 246 KQEELEQSKPRLSLFKMLSkHRVPMMKCIGLVLLFNVSNYMLTSYMPSYLTGVLGLPELsgLLLVMVVMFVMMPLTLMWGRWTDRIGRRPVIGFGAVGL 344
                 2222233444556666666699*************************************999999********************************99 PP

                 HHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHH.HHHHHHHHHHHHHHCHHHT-HHHHHHHHH CS
    Sugar_tr 328 aicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnw.lanflisllfpiiteaigggyvflvfagl 425
                 +++ +     +l+++++     + a+++ +l + +  +++ +++  +++ lf++++R++alai +++++ l+   + ll+ +++++ +++++ ++++++
  EHT98247.1 345 ILLSIPCF--MLIGTHN-----MWAVFAGLLILGVLHTCFSGTMPSTLPALFTTDIRYSALAIGFNLSVsLFGGTTPLLTAWLVDTTQNTMMPAYYMMV 436
                 99888876..7777777.....55555555555556666666666888******************98659**************************** PP

                 HHHHHHHHHHHS--STT--C CS
    Sugar_tr 426 avlfiifvfffvpetkgrtl 445
                 a +  + + ++v et+ ++l
  EHT98247.1 437 AGVIGLLTILTVRETARKPL 456
                 ****************9988 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1  39.5   1.5e-41   9.1e-38      37     349 ..      84     411 ..      43     412 .. 0.79
   2 !   38.3  19.3   1.2e-13   7.4e-10      36     183 ..     308     460 ..     308     484 .. 0.74

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 1.5e-41
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                  +++ +l+  ++ +++G+l+dr+Gr +vl ++++++++g++++  ++      +  + lllv+r++qG+ +g+ + ++a++ia+++++++rg++ ++l 
  EHT98247.1  84 TFAAAFLVRPLGGMVFGPLGDRIGRQKVLAITMIMMSIGTFCIGiIPsyasigIMAPiLLLVARLVQGFSTGGEYGGAATFIAEYSTDKHRGFMGSFLE 182
                 344566666999***************************44444332342444446667**************************************** PP

       MFS_1 128 agfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.illiall 217
                  g+  G++lg+ l  +++s ++        Wr++f+i+a+++l+++   + l +ee p+ k   +k+e +  + +p ++++k+l k++v +  ++  +l
  EHT98247.1 183 FGTLGGYLLGACLVTVMTSVISseammswgWRVPFFIAAPLGLFGLY--VRLKLEETPAFKQHMQKQE-ELEQSKPRLSLFKMLSKHRVPMmKCIGLVL 278
                 ***************999999999999999***************33..2333333333333333333.333444444468999999977567888888 PP

       MFS_1 218 lfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgf 316
                 lf + +++l++++p+yl  vlgl+  l+++ll++++++v+++l l++gr+ dr+grr+ + ++ ++l+l+++ +++l  t++ +++ ++l+++G+ + +
  EHT98247.1 279 LFNVSNYMLTSYMPSYLTGVLGLP-ELSGLLLVMVVMFVMMPLTLMWGRWTDRIGRRPVIGFGAVGLILLSIPCFMLIGTHNMWAVFAGLLILGVLHTC 376
                 8889********************.9******************************************************8888888899998888888 PP

       MFS_1 317 vfpsllalasdlapp..eeagtasglfntagslgg 349
                 +++++ + +  l+ +  ++++ a+g++ +++ +gg
  EHT98247.1 377 FSGTMPSTLPALFTTdiRYSALAIGFNLSVSLFGG 411
                 87777777777774433888888888877776665 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 1.2e-13
       MFS_1  36 llltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf..a..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigl.lsag 129
                 ll+ +++++++ ++l +Gr++dr+Grr+v+ +g+++++l   +++f  +  +++w+++++ ++ G+   ++  ++ + + ++f+ + r +a+++ ++++
  EHT98247.1 308 LLVMVVMFVMMPLTLMWGRWTDRIGRRPVIGFGAVGLILL-SIPCFmlIgtHNMWAVFAGLLILGVLHTCFSGTMPSTLPALFTTDIRYSALAIgFNLS 405
                 578899999*******************************.4444323368****9999999******9999999999999999977777776546677 PP

       MFS_1 130 fslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrks 183
                 +sl    +pll ++l++       +a ++++a+v  l+ +l   +  + +++ + +s
  EHT98247.1 406 VSLFGGTTPLLTAWLVDTTQntmMPAYYMMVAGVIGLLTIL--TVRETARKPLSGSS 460
                 8888889*********7777666555565555555555553..44433333333333 PP

>> Hol_Tox  Putative Holin-like Toxin (Hol-Tox)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00019       1.2      29      47 ..      72      90 ..      69      92 .. 0.87
   2 ?    3.3   0.6     0.015        87      35      47 ..     117     129 ..     111     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
     Hol_Tox 29 vsealQliLaFGtFilall 47
                + +a+Qli  FGtF  a l
  EHT98247.1 72 ANNAIQLIATFGTFAAAFL 90
                678***********98876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.015
     Hol_Tox  35 liLaFGtFilall 47 
                 ++++ GtF ++++
  EHT98247.1 117 IMMSIGTFCIGII 129
                 799*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3711.08
//
Query:       EHT98248.1  [L=400]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-32  111.1  43.5    1.5e-26   93.2  21.0    2.0  2  MFS_1           Major Facilitator Superfamily
    1.2e-12   47.4  15.1    3.6e-12   45.8  15.1    1.8  1  MFS_1_like      MFS_1 like family
     0.0084   15.9   6.5     0.0084   15.9   6.5    3.5  3  Trp_oprn_chp    Tryptophan-associated transmembrane protein (
  ------ inclusion threshold ------
       0.02   13.7   1.7      0.032   13.0   0.2    2.1  2  Folate_carrier  Reduced folate carrier
      0.053   11.9  28.6     0.0049   15.3  10.0    2.3  2  MFS_3           Transmembrane secretion effector
        1.5    7.5  17.1          9    4.9  17.1    1.9  1  LacY_symp       LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2  21.0   4.9e-30   1.5e-26       2     283 ..      10     290 ..       9     293 .. 0.85
   2 !   31.7  14.5   2.5e-11   7.6e-08      53     179 ..     272     397 ..     269     400 .] 0.90

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 4.9e-30
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +l+ f+ a  r+ lgp+l  +  ++ ++sp+eigl++t  +++ ++++lp+G+++d    +r ++l+g ++  +++lll++++++w+ +++ +++G++a
  EHT98248.1  10 CLMSFFLADVRDGLGPFLG-IFLTERHWSPDEIGLVMTSGGIAGLLSTLPAGVVADATRYKRfIILAGCVVITVATLLLWYSNQSWTAIISQIVAGIAA 107
                 6788888899999******.555777******************************766666677777777777757777889999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +++ p++a ++  ++ ++e +r +g   a + +G  l+++l+g+ a  +g  avf+++ +++++a++ + l +++++ ++   ++ ++  +   +p ++
  EHT98248.1 108 AFIGPTVAGITLGLTGQKEFNRQMGRNEAYNHAGNTLAAVLAGFAAWKWGLGAVFILMMVMAVFAAI-ATLAIRADDIDHDVARGLDD--KSSDKPTLS 203
                 **********************************************999999999999999999988.78999999999999999999..444455555 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls........glllaglllallalvgailallagrlsdrlgrrrrlllalll 283
                 +w + +k+     ll+a l+  +++ +  +llp++  ++   s        g l+a++++ +++lv++++a+++++ +d++g rr ++ all 
  EHT98248.1 204 LWILARKPA----LLVAGLTLLLFHLANAALLPML-SMRVASStgpdtvdpG-LYAAATVVISQLVMIPVAIFVSKRVDHIGYRRLIMTALLM 290
                 788888888....7777777777777777777774.44444445777***99.99999************************97777766654 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 2.5e-11
       MFS_1  53 GrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg 149
                 +  +d +G rr+++++ll++ l +++++ f +  ++++ + +l G++ag+l  a+  +i+ +  +  + + + ++++++ ++Ga + p+  gl+++ ++
  EHT98248.1 272 SKRVDHIGYRRLIMTALLMMPLRAVIAAeF-PETFFVVPVQILDGIAAGILGVAVPGYIVSLLRGsGHVNAGQSVVMLMQGVGASMSPAMTGLIVARYS 369
                 556799*****************8888899.77778*****************************99******************************** PP

       MFS_1 150 Wravfyilaivsllafvlfllllpeepper 179
                 ++ +f +l+ ++l+a++l  +++  + pe 
  EHT98248.1 370 YSIAFSALGCIALVALML--WWFSGRTPEA 397
                 ***************666..8886665554 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8  15.1   1.2e-15   3.6e-12      16     383 ..      21     374 ..       7     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.2e-15
  MFS_1_like  16 gsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvdaektfwil 114
                  +l P+l+i+l+++  ++ eig++++   +  +ls +  gv+aD ++ +  ++++++++ +v++l l                         +++ w+ 
  EHT98248.1  21 DGLGPFLGIFLTERHWSPDEIGLVMTSGGIAGLLSTLPAGVVADATRYKRFIILAGCVVITVATLLLW-----------------------YSNQSWTA 96 
                 5788*************************************************************666.......................78999999 PP

  MFS_1_like 115 fllvvlasfflaailvlldaatlkel..gedrkdyGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkv 211
                 ++  ++a +  a i + +  +tl  +  +e++++ Gr   +   G  ++a++ G++   +  + +    l++v+a++  i++l  +  ++  +  + ++
  EHT98248.1  97 IISQIVAGIAAAFIGPTVAGITLGLTgqKEFNRQMGRNEAYNHAGNTLAAVLAGFAAWKWGLGAVF--ILMMVMAVFAAIATLA-IRADDIDHDVARGL 192
                 999999999999999999999*999976778899********************998888887633..4555555555555555.33333333333332 PP

  MFS_1_like 212 tksl.......qvllnilknpeviifllvalilgmswgiienFlflYL.kelga....sntllGslvalgvvaeiplfffaeklleklGhvklliiall 298
                    +        +l+ + ++p +++  l++l+ + +++++   l++   ++ g     ++  + ++v++  +  ip+ +f +k ++ +G ++l+++all
  EHT98248.1 193 D--DkssdkptLSLWILARKPALLVAGLTLLLFHLANAALLPMLSMRVaSSTGPdtvdPGLYAAATVVISQLVMIPVAIFVSKRVDHIGYRRLIMTALL 289
                 2..1234566667999999**************************99966666411114556788899999999************************* PP

  MFS_1_like 299 ayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskia.pksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 ++ lr ++ a + ++ +v+p+++L gi+ g+l +a+  y+  +  + ++   gq+++ +l+ g+G  +   + Gl+   +s  ++F
  EHT98248.1 290 MMPLRAVIAAEFPETFFVVPVQILDGIAAGILGVAVPGYIVSLLrGSGHVNAGQSVV-MLMQGVGASMSPAMTGLIVARYSYSIAF 374
                 ***************************************877651566777888875.6779999999988888988888877777 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.2    0.0022       6.6     119     145 ..      70      96 ..      51     100 .. 0.84
   2 !   15.9   6.5   2.8e-06    0.0084      52     131 ..     143     223 ..     135     242 .. 0.78
   3 ?   -0.7   1.5      0.35   1.1e+03      39     125 ..     354     376 ..     310     398 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0022
  Trp_oprn_chp 119 pvlalaggvllllagvllllrarswpa 145
                     + lag+v++++a +ll+ + +sw+a
    EHT98248.1  70 RFIILAGCVVITVATLLLWYSNQSWTA 96 
                   56889********************87 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.8e-06
  Trp_oprn_chp  52 llAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaave...ltawpvlalaggvllll 131
                   +lAa++A +a+ ++g+ +v +l++++++ aa+a l++ +d+ d + a+  +  + +s + + +   l+  p+l +ag  lll+
    EHT98248.1 143 TLAAVLAGFAAWKWGLGAVFILMMVMAVFAAIATLAIRADDIDHDVARGLD--DKSSDKPTLSlwiLARKPALLVAGLTLLLF 223
                   69************************************9999888888866..334455555566666677777777666654 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.35
  Trp_oprn_chp  39 adwapaltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaaveltawpvlalag 125
                   a+++pa+t l ++                                                                     +a+ +
    EHT98248.1 354 ASMSPAMTGLIVARYSYS----------------------------------------------------------------IAFSA 376
                   223333332222222222................................................................22222 PP

>> Folate_carrier  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.1e-05     0.032      54     109 ..      52     108 ..       5     115 .. 0.74
   2 ?   -1.6   0.1      0.29   8.8e+02     291     334 ..     135     178 ..     120     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
  Folate_carrier  54 ylallvpvflltdylrYkpvivlqalalivvwllllftks.llalqvlevfYgvata 109
                      l   +p  +++d  rYk  i+l ++  i+v +lll+ ++  +++++ +++ g+a a
      EHT98248.1  52 GLLSTLPAGVVADATRYKRFIILAGCVVITVATLLLWYSNqSWTAIISQIVAGIAAA 108
                     55666788999**********************999976515666777777777655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.29
  Folate_carrier 291 eavstllgavaalaagyvkvnwerwgelvlavlsvlqagllllm 334
                     ea  +    +aa++ag+   +w + + ++l++++++ a++  l+
      EHT98248.1 135 EAYNHAGNTLAAVLAGFAAWKWGLGAVFILMMVMAVFAAIATLA 178
                     66666667778888888888888888888888777777665554 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  10.0   1.7e-06    0.0049      37     145 ..      31     135 ..      27     243 .. 0.77
   2 ?    1.9  11.4     0.019        56      54     191 ..     260     391 ..     233     400 .] 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-06
       MFS_3  37 mtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrr 135
                 +t+ + sp  + lv  ++ +  +l +++aG++aD    +++++ + +++++v++ll   +     + w+ +++ +++gi aa+  P+   ++  l  ++
  EHT98248.1  31 LTERHWSPDEIGLVMTSGGIAGLLSTLPAGVVADATRYKRFIILAGCVVITVATLLLWYSN----QSWTAIISQIVAGIAAAFIGPTVAGITLGLTGQK 125
                 6888999**********************************************99988765....67999****************9988887777777 PP

       MFS_3 136 dvpaAvaLns 145
                 + +  +  n 
  EHT98248.1 126 EFNRQMGRNE 135
                 7766554443 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.019
       MFS_3  54 atLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaR 152
                 + L ++ ++i++    D +  R++++++ l++ l +v+++ +  + ++ p+ +l  +    +G a+  P +  +v+ l    +v+a   +  +   +  
  EHT98248.1 260 SQLVMIPVAIFVSKRVDHIGYRRLIMTALLMMPLRAVIAAEFPETFFVVPVQILDGIAAGILGVAV--PGY--IVSLLRGSGHVNAGQSVVMLMQGVGA 354
                 456666778888888999999*********************************999999999887..766..45556667788888777778888899 PP

       MFS_3 153 svGPAlgGvlvaavGaalafavnalsylalivallrwkr 191
                 s+ PA++G++va     +af+  al  +al++ +l+w  
  EHT98248.1 355 SMSPAMTGLIVARYSYSIAFS--ALGCIALVALMLWWFS 391
                 9************99888875..6888888888888854 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  17.1     0.003         9      22     398 ..      19     390 ..       3     397 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.003
   LacY_symp  22 imsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvGgvflGlvysa 120
                 +     p++ ++l+e  + s  e+G+v +   +  +l     G++ d    k+ ++ +   +++ +a +l+  ++       ++  +v g+   ++  +
  EHT98248.1  19 VRDGLGPFLGIFLTE-RHWSPDEIGLVMTSGGIAGLLSTLPAGVVADATRYKRFIILA-GCVVITVATLLL-WYSNQSW-TAIISQIVAGIAAAFIGPT 113
                 455567999999998.589999**************99999******99888766644.334444444444.3443333.3344566666666666666 PP

   LacY_symp 121 gagaieayiekvsraskfeyGkarvfGclGyalcaslaGil.fsidpslvfwlasgfalilllllllskpdksssakvadalGankeafslrlalelfk 218
                  ag+    + +  ++++ + G+  ++   G +l+a+laG   ++     vf l   +a+  ++  l  ++d      va  l  ++++  +     l +
  EHT98248.1 114 VAGITLGLTGQ--KEFNRQMGRNEAYNHAGNTLAAVLAGFAaWKWGLGAVFILMMVMAVFAAIATLAIRADD-IDHDVARGLDDKSSDKPTLSLWILAR 209
                 66666555544..5666789*******************752666777788888777777777666666543.33344444444444443334445667 PP

   LacY_symp 219 drklwvfvlyvvGvasvydvfdqq.favffkslfespeaGtrvfGyvttagellnalimfiapli....vnriGaknalliagvimsvrilgsafatta 312
                 ++ l v  l +     ++++ +   ++++   + +s+   t   G  ++a +++  l+m+ + ++    v+ iG +  ++ a ++m +r + +a + ++
  EHT98248.1 210 KPALLVAGLTL----LLFHLANAAlLPMLSMRVASSTGPDTVDPGLYAAATVVISQLVMIPVAIFvskrVDHIGYRRLIMTALLMMPLRAVIAAEFPET 304
                 77765543322....3444444443566666666666666777788888888888888877666612225679************************** PP

   LacY_symp 313 levvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivlsltlisvf 398
                 + vv +++l  +   +l v+v  yi+s +              l++ +++ +  +++G +  +  +  a+ +lg+i l+ +++  f
  EHT98248.1 305 FFVVPVQILDGIAAGILGVAVPGYIVSLLRGSGHVNAGQSVVMLMQGVGASMSPAMTGLIVARYSYSIAFSALGCIALVALMLWWF 390
                 ***************************997655444445556788999999999**********************9988877555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2753.66
//
Query:       EHT98249.1  [L=274]
Description: CDP-diacylglycerol pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-67  225.3   0.0    8.1e-67  225.1   0.0    1.0  1  CDH       CDP-diacylglycerol pyrophosphatase
  ------ inclusion threshold ------
        9.5    6.9   7.4        1.9    9.1   2.4    2.2  2  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> CDH  CDP-diacylglycerol pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   0.0   9.1e-71   8.1e-67       2     223 ..      27     251 ..      26     252 .. 0.99

  Alignments for each domain:
  == domain 1  score: 225.1 bits;  conditional E-value: 9.1e-71
         CDH   2 daLWkivseqCvpaqqakgepapCaevdla....kgyavlkdrngplqyLliPtarisGiespallepetpnyfaaAwaarklvseklgkalpdealsL 96 
                 daLW + ++ C ++++ +g +apC++v la    +g++v+++++ p++++l+Pt  +sGiesp l  +++++yf  Aw +r  v +++g ++p+++l++
  EHT98249.1  27 DALWMVTNDVCRVNYAYTGYAAPCQQVYLAkgeqQGFSVIQNPRYPYHFILVPTLLLSGIESPLLSYTTRTDYFGYAWLMRYRVMAAYGGTVPEDRLGM 125
                 9****************************99999***************************************************************** PP

         CDH  97 aiNsasgRsQdqLhiHidClrpdvraaLkkaaakigekWkslpekLegheylarrveaeelaqknpfrllaeelpeareemaeaslalvgasekdgkkg 195
                 a+Nsa gRsQ+qLhiH++Clr+dv+++L+++++ i+++W++lp+kL  h+y+arrv + +++   p++ +a++++ +  ++ae+++a+v+a+++ gk+g
  EHT98249.1 126 AVNSAWGRSQNQLHIHLTCLREDVYRQLQAERPYIQDDWHPLPDKLLTHTYYARRVLQPSVMGIYPVASVARDFHLSPPQLAEYGIAVVPATFS-GKNG 223
                 *********************************************************************************************9.588* PP

         CDH 196 fvlLaseadllkgnrasaeelqDheCki 223
                 f+lL +++ ++kgnras+e+l+D++C+i
  EHT98249.1 224 FILLVTRRGWDKGNRASVESLLDKNCEI 251
                 **************************98 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.4   0.00021       1.9       6      18 .]      12      24 ..      11      24 .. 0.91
   2 ?   -0.5   0.2      0.24   2.1e+03       6      16 ..      75      85 ..      75      85 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00021
      LPAM_1  6 lalgalllLsGCs 18
                +++g++++LsGC+
  EHT98249.1 12 ILAGIAFALSGCA 24
                589*********6 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.24
      LPAM_1  6 lalgalllLsG 16
                ++l+ +llLsG
  EHT98249.1 75 FILVPTLLLSG 85
                5677799**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 2022.59
//
Query:       EHT98250.1  [L=300]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-39  135.8   3.5    1.8e-39  135.3   3.5    1.2  1  LysR_substrate  LysR substrate binding domain
    6.5e-20   70.8   1.2    6.5e-20   70.8   1.2    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.011   15.6   0.2      0.033   14.1   0.2    1.7  1  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   3.5     3e-43   1.8e-39       4     206 ..      92     296 ..      91     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 3e-43
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.gep 95 
                     ++grLr+++p+t++r  ++pll  f++++Pe+el+++ +d  +++dl +eg +D+a+r g     ++++ +r L++e++v +asp+  L r g+p
      EHT98250.1  92 PSGRLRLAVPHTYGRLNVMPLLIPFCQQHPELELRVSFSD--RFIDLFDEG-IDVAVRIGGSadLPASMGSRYLGRERMVFCASPAW-LDReGRP 182
                     69**************************************..*********.**********************************9.9999*** PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                      + ++L +++ il+e+   +   ++   +e  +++     ++ + +++a l++v aGlGia +p+++v+ ++a g+l+ + lp++++   +l+++
      EHT98250.1 183 QDEQALMQHRAILYERADNTPKPWLFPREEGHVQWrdmPFRMALGDVDAQLQAVIAGLGIAQMPSWLVNSAVAKGELE-IILPQLQPDgLALSVI 276
                     *******************99999988888888889899***************************************.999999********** PP

                     EETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflre 206
                     ++++++l p+v a++ +l++
      EHT98250.1 277 WPRRKQLLPKVDALLSALTQ 296
                     ***************99976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   1.2   1.1e-23   6.5e-20       2      59 ..       7      64 ..       6      65 .. 0.95
   2 ?   -1.6   0.1      0.45   2.7e+03       4      19 ..      72      87 ..      72      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.1e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +++  fva +e+gsft+AA +L+++ +avs++++rLE++lg +L+eRt+r+l+LT+aG
  EHT98250.1  7 KDIVPFVASVESGSFTAAAARLHVTGSAVSKSVSRLEARLGSRLLERTTRRLQLTDAG 64
                56777****************************************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.45
                HHHHHHHHHHSSHHHH CS
       HTH_1  4 lrlfvavaeegsftrA 19
                +r+ +++ae++s+ +A
  EHT98250.1 72 IRIMEELAEAESVLAA 87
                5889999999999887 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   5.5e-06     0.033      24      48 ..      21      45 ..      15      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.5e-06
                HHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 24 vgelarrlglsksavsrilkrLvaa 48
                 ++ a+rl+++ savs+ + rL+a+
  EHT98250.1 21 FTAAAARLHVTGSAVSKSVSRLEAR 45
                6788*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2328.57
//
Query:       EHT98251.1  [L=355]
Description: NAD-dependent epimerase/dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-12   46.8   0.0    3.2e-12   46.4   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.2e-06   28.5   0.0    2.7e-06   27.4   0.0    1.6  2  NAD_binding_10  NAD(P)H-binding
    1.7e-05   24.0   0.0      3e-05   23.3   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain
     0.0022   17.5   0.0      0.004   16.7   0.0    1.5  1  adh_short       short chain dehydrogenase
     0.0023   17.4   0.1     0.0076   15.7   0.1    1.8  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0     9e-16   3.2e-12       1     136 [.       5     141 ..       5     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 9e-16
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +l++G++G iG+al+++l++ g++v gl+r + a ++++    +  ++dl d++a+++ +k+++pdav+       v a+ ++ ++ i+ n  + +n++
  EHT98251.1   5 ALIVGISGVIGRALAERLMKDGWQVSGLSRGRGAVPQGC----HSLTADLIDPDAVRATLKDTKPDAVFFS-----VWARQDSEKENIRVNGGMIRNVI 94 
                 59*****************************88888877....568***********************99.....5555666677799********** PP

                 HHHHHH..TCT......EEEEEEEGGGGTSCSS..SSBSTCSTTS-- CS
   Epimerase 100 eaarka..gvk......rllflsSsevYGkdae..qpkeettltgpl 136
                 ea+ ++  g++        ++l+  e YGk++   +p  e+   +p+
  EHT98251.1  95 EALGERlqGAHvalvtgLKHYLGPFEAYGKGEVpvTPFREEQGRQPV 141
                 **997655333445556678888899999888864465555544444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.6e-10   2.7e-06       2     100 ..      10     113 ..       9     129 .. 0.82
   2 ?   -3.6   0.0       2.5   8.9e+03      44      61 ..     274     291 ..     268     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7.6e-10
                     TTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-..SEEEES---TCC..HHHH.......HHHHHHHH CS
  NAD_binding_10   2 AtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkga..daVvsalggggk..deeg.......aknivdaa 85 
                      +G +Gr+l+++l ++ g++v  l R    ++     +g++ +++d+ d+++++++lk++  daV++++ ++++  +e          +n+++a+
      EHT98251.1  10 ISGVIGRALAERLMKD-GWQVSGLSRGRGAVP-----QGCHSLTADLIDPDAVRATLKDTkpDAVFFSVWARQDseKE-NirvnggmIRNVIEAL 97 
                     5899************.5************99.....69*******************98667******666653422.24777889*******9 PP

                     HH.CT--EEEEEEETT CS
  NAD_binding_10  86 ke.agvkRfvlvsaig 100
                      e  +  ++ lv++++
      EHT98251.1  98 GErLQGAHVALVTGLK 113
                     5525566777777665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
                     EE--TT-CCHHHHHHTT- CS
  NAD_binding_10  44 vegdvtdvedlaealkga 61 
                     ++g ++d++++ +a++g 
      EHT98251.1 274 LDGRMQDAASVWQAIAGR 291
                     567777777777777775 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   8.3e-09     3e-05       3      56 ..       5      69 ..       3      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.3e-09
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...........T--TTSHHHHHHHHHHH--SEEE CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre...........eldltdaeavaellkeakpdvvv 56
                    l++G +G +G++La++l ++g++v +l+r            ++dl d++av+++lk++kpd+v 
     EHT98251.1  5 ALIVGISGVIGRALAERLMKDGWQVSGLSRGrgavpqgchslTADLIDPDAVRATLKDTKPDAVF 69
                   699*************************99999*****************************985 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-06     0.004       1      45 [.       3      47 ..       3      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHH CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelk 45
                k +l++G s+ IGra+a++l+k+G++v  ++r   ++ + + +l 
  EHT98251.1  3 KQALIVGISGVIGRALAERLMKDGWQVSGLSRGRGAVPQGCHSLT 47
                679************************999988777666555555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.1e-06    0.0076       1      79 [.       6      68 ..       6      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEE CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdev 79
                   Li Gi+G iG  lae+L++ g +v g+ r   ++  +                 +   +Dl D ++++  l++++pd+v
     EHT98251.1  6 LIVGISGVIGRALAERLMKDGWQVSGLSRGRGAVP-QG---------------CHSLTADLIDPDAVRATLKDTKPDAV 68
                   8*************************987655433.11...............22356788888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2735.75
//
Query:       EHT98252.1  [L=217]
Description: hypothetical protein CKS_3025 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-39  133.1   1.9    1.2e-38  132.9   1.9    1.0  1  NAD_binding_10  NAD(P)H-binding
    2.2e-10   40.5   1.3    2.8e-10   40.2   0.8    1.4  2  NmrA            NmrA-like family
    1.1e-05   25.0   0.1    1.5e-05   24.6   0.1    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00036   19.6   0.0    0.00046   19.3   0.0    1.1  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0073   16.7   0.4      0.013   15.9   0.4    1.5  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
  ------ inclusion threshold ------
       0.02   15.4   0.8        0.1   13.2   0.1    2.4  3  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.034   13.2   0.2       0.06   12.4   0.1    1.5  1  RmlD_sub_bind   RmlD substrate binding domain
      0.037   14.3   0.3      0.095   13.0   0.0    1.8  2  TrkA_N          TrkA-N domain
      0.094   12.8   0.5       0.26   11.4   0.2    1.8  2  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   1.9   5.8e-42   1.2e-38       1     184 []       8     192 ..       8     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 5.8e-42
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT..-CCHHHHHHTT-SEEEES---TCC........HHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvt..dvedlaealkgadaVvsalggggk........deegaknivdaa 85 
                     GA GkvG +l+k+l ar+ h+v al R+pe+++++    g++ + gd++  +ve+la+ ++g+++V++++g+gg         d +g + +v+aa
      EHT98252.1   8 GAAGKVGTHLTKQLCARQ-HAVSALHRKPEQAEAIT-VVGATPIMGDLQklSVETLAQKMTGHEVVIFSAGAGGAgieltnaiDGQGLALAVAAA 100
                     9****************5.**************997.89*********84469*************9999988887888777777779999**** PP

                     HHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEEETTSS----EEEHHHHHHHHHHH CS
  NAD_binding_10  86 keagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdepttkyrvvekgepfkggsisradVAdvlvav 180
                     ++agv+Rf+lvs +        + ge ++e +++y+  kr a+  l +s+ldw+i+rpg Ltd +++++  v  g  +  g ++r+dVA++lva+
      EHT98252.1 101 EKAGVNRFLLVSVFPDA-----ARGEKTSEGFENYMHVKRLADVRLVESQLDWVILRPGTLTDTAGSGT--VRAGYAIPYGAVPREDVAATLVAL 188
                     *************9844.....456778899*********************************96543..34455677899************* PP

                     CTXG CS
  NAD_binding_10 181 lddp 184
                     ++ p
      EHT98252.1 189 VETP 192
                     9876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.8   1.4e-13   2.8e-10       3     109 ..       6     120 ..       4     138 .. 0.81
   2 ?   -3.1   0.0       2.2   4.5e+03     183     207 ..     178     201 ..     171     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.4e-13
                 ESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT..-HHHHHHHHTT-SEEEE---GG......S-HHH.HHHHH.HHHHHH CS
        NmrA   3 viGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdld..dkeslvealkgvdvvfsvtgfy......skeie.dgkkl.vdAake 91 
                 +iGa+G+ G ++++ l +++h v al R++++  a+++   G++ + gdl+  + e l++ + g +vv+++ g+        + i+ +g +l v+Aa +
  EHT98252.1   6 IIGAAGKVGTHLTKQLCARQHAVSALHRKPEQ--AEAITVVGATPIMGDLQklSVETLAQKMTGHEVVIFSAGAGgagielTNAIDgQGLALaVAAAEK 102
                 9***************************9976..5566779*********9667899***************977888877555542556653678889 PP

                 HS-SEEEEEE---GG.GT CS
        NmrA  92 aGvkhfiySslgddndrs 109
                 aGv++f+  s+++d  r 
  EHT98252.1 103 AGVNRFLLVSVFPDAARG 120
                 ******999888877544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHTTEEEEE CS
        NmrA 183 eeDiGafvikilkdprklkgkrikl 207
                  eD++a  +++++ p+ l+ k+i+l
  EHT98252.1 178 REDVAATLVALVETPQ-LNHKIIEL 201
                 5788888888888775.44445544 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   7.6e-09   1.5e-05       2     131 ..       5     124 ..       4     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 7.6e-09
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee.qpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +++Ga+G +G++l+k+l ++++ v +l r++++ +      ++ + +dl + s +e l ++  + ++vi  A+ gg + + +++ d      qg    +
  EHT98252.1   5 FIIGAAGKVGTHLTKQLCARQHAVSALHRKPEQAEAITVVGATPIMGDLQKLS-VETLAQKMtGHEVVIFSAGAGGAGIELTNAID-----GQGLALAV 97 
                 79****************************888777777777*******9877.77777766255555555668888887777555.....89999999 PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCS CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeqpkeett 131
                  aa kagv+r+l +s   v+++ a+   e+t+
  EHT98252.1  98 AAAEKAGVNRFLLVS---VFPDAAR--GEKTS 124
                 99999*****99987...4776666..44444 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.3e-07   0.00046       2     134 ..       6     128 ..       5     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.3e-07
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtd..kdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 ++G+aG +G +l k+L  +++     v  l+ +pe  e ++ v+ +  i gD+++   ++l + + g +vvi+ a++     +lt+     +  +G   
  EHT98252.1   6 IIGAAGKVGTHLTKQLCARQH----AVSALHRKPEQAEAITVVGAT-PIMGDLQKlsVETLAQKMTGHEVVIFSAGAGGAGIELTNA----IDGQGLAL 95 
                 89***************9996....455677888887777777777.******8722679****************99888766665....7889**** PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdE 134
                  ++a+ kagv++++ +S         +ge+  +g E
  EHT98252.1  96 AVAAAEKAGVNRFLLVSVFPD---AARGEKTSEGFE 128
                 *************99985432...233555555555 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   6.5e-06     0.013       4      78 ..       6      79 ..       3     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.5e-06
                    EETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHH CS
  Semialdhyde_dh  4 ivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagv 78
                    i+Ga G vG+ l + L   +++  +     ++ +  ++  a +++ + ++l+ve+  ++++ + ++v+++++ag 
      EHT98252.1  6 IIGAAGKVGTHLTKQLCARQHAVSALHRKPEQAEAITVVGATPIMGDLQKLSVET-LAQKMTGHEVVIFSAGAGG 79
                    9****************96665555544555567778888889************.5566678888888887764 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.1e-05       0.1       4      43 ..       6      42 ..       3      75 .. 0.80
   2 ?   -1.6   0.0       2.1   4.2e+03      12      38 ..      91     119 ..      89     151 .. 0.52
   3 ?   -1.3   0.0       1.7   3.3e+03      68      96 ..     175     203 ..     174     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-05
                   EE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHH CS
  F420_oxidored  4 ii.GaGnmgealasgllaagaqpheivvansrnpekaeela 43
                   ii +aG++g  l+++l a+    h +  a +r+pe+ae++ 
     EHT98252.1  6 IIgAAGKVGTHLTKQLCARQ---HAVS-ALHRKPEQAEAIT 42
                   67678**************9...9999.99*******9974 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
                    HHHHHHHHHTTS..-GGCEEEEEESSCCC CS
  F420_oxidored  12 ealasgllaaga..qpheivvansrnpek 38 
                    ++la+ ++aa +   ++ ++v   ++  +
     EHT98252.1  91 QGLALAVAAAEKagVNRFLLVSVFPDAAR 119
                    56666666655443333333333344444 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.7
                    -S-HHHHHHHHHHCGHHHHTTSEEEEESS CS
  F420_oxidored  68 avkpedveevlselakdalkgklvisvla 96 
                    av+ edv+++l +l +  + ++ +i  +a
     EHT98252.1 175 AVPREDVAATLVALVETPQLNHKIIELTA 203
                    79999999999888666666666666665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     3e-05      0.06       4      38 ..       5      39 ..       2      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                   EEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TT CS
  RmlD_sub_bind  4 lvtGanGqlGseLakqlaeeglevlaltreeldlt 38
                    ++Ga G++G++L+kql +++++v al+r+  + +
     EHT98252.1  5 FIIGAAGKVGTHLTKQLCARQHAVSALHRKPEQAE 39
                   799************************99954443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.8e-05     0.095       2      51 ..       6      55 ..       5      76 .. 0.86
   2 ?   -3.0   0.0       4.2   8.4e+03      90     108 ..     183     201 ..     178     210 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.8e-05
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTS CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatd 51
                ii  +G+vG++l+++L ++++ v++  +++e++e ++  g++ + gd  +
  EHT98252.1  6 IIGAAGKVGTHLTKQLCARQHAVSALHRKPEQAEAITVVGATPIMGDLQK 55
                56669*************6668**************99999999998765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.2
                 SEEEEEESSGGGHHHHHHH CS
      TrkA_N  90 kkiiaraqdpehaellkkl 108
                 ++ +a +++p+  +++ +l
  EHT98252.1 183 ATLVALVETPQLNHKIIEL 201
                 4455555555555555444 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013      0.26       4      71 ..       5      71 ..       3      77 .. 0.62
   2 ?   -2.0   0.0       1.9   3.8e+03       7      31 ..      76      98 ..      68     114 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHH.HHSSSS--S-BEBSSHHHHHHH-SEE CS
      DapB_N  4 avvGasGrmGkevvkaveeaedlelvaavdrkeselegkdag.ellglgklgvavtddleevlekadvl 71
                 ++Ga+G++G++++k + +  + + v+a++rk++++e+  +      +g l+    ++l++ ++  +v+
  EHT98252.1  5 FIIGAAGKVGTHLTKQLCA--RQHAVSALHRKPEQAEAITVVgATPIMGDLQKLSVETLAQKMTGHEVV 71
                599**************99..444567777777555444433022223344444445555555445555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
                TTTSHHHHHHHHHHHHSTTEEEEEE CS
      DapB_N  7 GasGrmGkevvkaveeaedlelvaa 31
                Ga G  G e+++a++  ++l l+ a
  EHT98252.1 76 GA-GGAGIELTNAIDG-QGLALAVA 98
                55.5566677777766.34443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1649.49
//
Query:       EHT98253.1  [L=548]
Description: fumarase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-88  294.0   0.0    7.1e-88  293.3   0.0    1.4  1  Fumerase_C   Fumarase C-terminus
    7.1e-86  288.0   0.0    9.2e-86  287.6   0.0    1.1  1  Fumerase     Fumarate hydratase (Fumerase)
  ------ inclusion threshold ------
      0.048   11.9   0.0      0.069   11.4   0.0    1.1  1  Myosin_head  Myosin head (motor domain)


Domain annotation for each model (and alignments):
>> Fumerase_C  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.3   0.0   1.2e-91   7.1e-88       1     205 [.     332     537 ..     332     538 .. 0.99

  Alignments for each domain:
  == domain 1  score: 293.3 bits;  conditional E-value: 1.2e-91
  Fumerase_C   1 GvflekleeepakllpeveekekkeeavevdLnq..keteeelskykvgtrlllsGkllvaRDaaHkrlkerlekgeelpeyvklkdrviYyaGPvktp 97 
                 G+++ekle++p +++pe+ +k+ + e+v++dLn+  +e++++ls+y+v+trl+l+G+++vaRD+aH++lker+++ge lp+y+k  d+++YyaGP+ktp
  EHT98253.1 332 GIWIEKLEANPGRYIPEALRKQGEGEVVHIDLNRpmNEILAQLSEYPVSTRLSLTGTIIVARDIAHAKLKERIDNGEGLPQYIK--DHPVYYAGPAKTP 428
                 89***************9999999**********999***********************************************..************* PP

  Fumerase_C  98 edeavgsaGPTTatRmdkyvekllkktgllimlaKgnrskkvleaikkhggvYLgaiGG.aAilakkaikkvevvefeelGmEAiyeievedfpafvvv 195
                 e++a+gs+GPTTa+Rmd+yv+ l++++g+ +mlaKgnrs++v++a++khgg+YLg+iGG aA+la+++ik+ e+ve++elGmEAi++ieve+fpaf++v
  EHT98253.1 429 EGYASGSLGPTTAGRMDSYVDLLQANGGSKVMLAKGNRSQQVTDACHKHGGFYLGSIGGpAAVLAQQSIKSLECVEYAELGMEAIWKIEVENFPAFILV 527
                 *************************************************************************************************** PP

  Fumerase_C 196 ddkGndlfke 205
                 ddkGnd+f++
  EHT98253.1 528 DDKGNDFFQH 537
                 ********96 PP

>> Fumerase  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.6   0.0   1.5e-89   9.2e-86       4     269 ..      51     326 ..      48     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 287.6 bits;  conditional E-value: 1.5e-89
    Fumerase   4 veealkeastelpedvlealkkalek.EesenakevleqlleNaeiAaeeklplCqDTGiavvfvkigeevevetgdleeaineGvreaykegplRksv 101
                 +++a+++as+ l++ ++++++++l++ E+s+n+k+v+ q+l+N+eiAa++ lp CqDTG+a++++k+g++v+ ++g  e+a+++G++++y e +lR+s+
  EHT98253.1  51 AQQAFHDASFMLRPAHQQQVASILDDpEASDNDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIMGKKGQRVW-TGGGDEAALSKGIYNTYIEDNLRYSQ 148
                 789********************************************************************9.77788888****************** PP

    Fumerase 102 vadp.l.erkntgdnlPavihielvpgdeleitvlakGgGsenksklk.....mlnpsdglegvkkfvletvkeagtnaCpPlvlgvgiGgtseeaall 193
                  a   + +++ntg+nlPa+i+++ v+gde++++++akGgGs+nk++l+     +l p     ++k++++++++++gt+aCpP++++ +iGgts+e +l+
  EHT98253.1 149 NAALdMyKEVNTGTNLPAQIDLYSVDGDEYKFLCIAKGGGSANKTYLYqetkaLLSP----GKLKNYLVDKMRTLGTAACPPYHIAFVIGGTSAESTLK 243
                 **99999*****************************************999988888....78************************************ PP

    Fumerase 194 akk.al...lrelgeenpdee.....laeleeellekinklgiGpqGlGGkttvldvkierlprhiAslpvavnvsCsadRrakv 269
                 ++k a+   ++ l++e+ +e+     + +le+elle++++lg+G+q +GGk++++d++++rlprh+As+pv+++vsCsadR++k+
  EHT98253.1 244 TVKlASthyYDGLPTEG-NEHgqafrDVQLEQELLEAAQQLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKA 326
                 ***99989888888888.444467889*******************.***********************************997 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05     0.069     163     251 ..     200     287 ..     194     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.1e-05
                  TSSEEEEEEEEECE-GGGGT---TT--SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--H CS
  Myosin_head 163 kgkiagakietYLLEksRvvkqakeERnyHiFYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglse 251
                  k+ ++ +k+++YL++k R +  a+    yHi + +   ++e++ k++kl ++++y  l ++g+ + ++  d++  +e+ +a + lgl +
   EHT98253.1 200 KALLSPGKLKNYLVDKMRTLGTAA-CPPYHIAFVIGGTSAESTLKTVKLASTHYYDGLPTEGNEHGQAFRDVQLEQELLEAAQQLGLGA 287
                  4556789***********998765.679*********************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3802.72
//
Query:       EHT98254.1  [L=503]
Description: anion transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     3e-149  498.1  41.3   3.6e-149  497.8  41.3    1.0  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    1.1e-11   44.4  54.5    6.7e-09   35.4  29.0    2.9  2  CitMHS         Citrate transporter


Domain annotation for each model (and alignments):
>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.8  41.3    4e-153  3.6e-149       3     469 ..      23     502 ..      21     503 .] 0.98

  Alignments for each domain:
  == domain 1  score: 497.8 bits;  conditional E-value: 4e-153
  Na_sulph_symp   3 klaklllllvvlliilllPapdgleskawrllaifiaaivglileplplavialialsllavligvla..............akalsevlsgfssd 84 
                    k + l l+++v + +ll+P+p+gle+ aw+++aif+ +ivgli eplp avi l ++ ++a+ +++l               +++ ++++sgf ++
     EHT98254.1  23 KALMLALPVIVAVLLLLVPVPSGLEPYAWHFFAIFVGVIVGLIFEPLPGAVIGLTGVVVIALFSQFLLfsptelanptfklaTESFKWAVSGFGNS 118
                    56678899999**********************************************************************9999*********** PP

  Na_sulph_symp  85 ttlLvfaalliaaavektgLgkRiAlvlvkivGkrtliLgyalvladlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltv 180
                    t++L+f+a+++aa++ kt  g+R+Al+lvk +G r l+Lgya+ +adlllap+tpsntAr+gg+++p+i +l++++gs+p++ s+rkig+ylm+++
     EHT98254.1 119 TVWLIFGAFMFAAGYDKTQFGRRLALILVKYLGRRSLTLGYAITFADLLLAPFTPSNTARSGGTIYPIIANLPPLYGSKPNDPSARKIGSYLMWVA 214
                    ************************************************************************************************ PP

  Na_sulph_symp 181 vqsasitsiaflTamApNllllglinsilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilf 276
                    + +a+its++fl a ApNll+l+l++s+ g++i+w+ Wfla+ip+g++l+l +pll+y++yppe+k  +e+ ++a +el++lG lt++e  ll+ +
     EHT98254.1 215 ITAACITSSMFLSALAPNLLALALVKSVIGFDISWGMWFLAFIPLGLLLILTMPLLAYWFYPPEVKVNDEVPRWAMAELEKLGKLTRNEILLLVFV 310
                    ************************************************************************************************ PP

  Na_sulph_symp 277 vlllllWifgeslnidattvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfv 372
                    v +ll+Wif     i+ ++ a++v++++l + vl+W+Di+++k+aWnt+ ++++l+ala +l r+g+i wlg+    +l+g+ p++  +++l++f+
     EHT98254.1 311 VCALLMWIFATAW-IEPAMAALLVIILMLWTGVLNWNDIISNKAAWNTFAWFATLVALADGLARVGFIAWLGKEGGILLQGYDPQISAVVLLIAFF 405
                    ************9.********************************************************************************** PP

  Na_sulph_symp 373 lvhylfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillllgalwwkl 468
                    l+hylfaS tA+t+allp +l++a +ipg+++ +++l+l  + +++g+++py+tgp+pi++g+gyl++kdywrlG i++ i+l+ ++l++  w  +
     EHT98254.1 406 LLHYLFASTTAHTTALLPAMLTIAASIPGINMPVFCLMLCTSLGVMGIITPYGTGPSPIYYGSGYLPTKDYWRLGTIFGAIFLIAMMLIAYPWMVW 501
                    **************************************************************************************9999998776 PP

  Na_sulph_symp 469 L 469
                    +
     EHT98254.1 502 M 502
                    5 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4  29.0   7.5e-13   6.7e-09       2     239 ..      62     381 ..      61     382 .. 0.65
   2 !   22.4  25.0   6.7e-09     6e-05       4     167 ..     319     495 ..     313     503 .] 0.76

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 7.5e-13
                 xxxxxxxxxxxxxxxxxxxxx.......xxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
      CitMHS   2 vllileklrldvvallvlvll.......vltiee...............alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvl 77 
                 v li+e l+ +v+ l ++v+        ++++ e               a+sg+++++++l++ga++++a+ ++t + +rla  l++  g++   l  +
  EHT98254.1  62 VGLIFEPLPGAVIGLTGVVVIalfsqflLFSPTElanptfklatesfkwAVSGFGNSTVWLIFGAFMFAAGYDKTQFGRRLALILVKYLGRRSLtLGYA 160
                 6678888777777776666667778888455555566666666677777*****************************************977777777 PP

                 xxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx RF
      CitMHS  78 lvlltallsafvsndgv.....vlimipivlslakrlkklppl.......lliplalaaniggaltpiGtpttraa.........arpglslpnlllla 155
                 + ++  ll++f   +++     +  +i+ + +l+ ++ ++p +       + +++  a+ + ++++    p  +a          ++ + +++   ++ 
  EHT98254.1 161 ITFADLLLAPFTPSNTArsggtIYPIIANLPPLYGSKPNDPSArkigsylMWVAITAACITSSMFLSALAPNLLALalvksvigfDISWGMWFLAFIPL 259
                 ************998888*777555666667889986666666*****644445555666666666666665555588888888866666666666644 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxx.....xxxxxxx.................................. RF
      CitMHS 156 lllvgllplvllfmfgvalalpvnap........kvkkqkaiieaiarsllpv.....atillla.................................. 207
                  ll +l + +l+++f  +                 +++ +++ ++    +l       a     +                                  
  EHT98254.1 260 GLLLILTMPLLAYWFYPPEV-----KvndevprwAMAELEKLGKLTRNEILLLvfvvcA-----Llmwifatawiepamaallviilmlwtgvlnwndi 348
                 44444433333332222221.....0112223332222222222222222222222220.....12222223333333333333345567999999999 PP

                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 208 .ykkveWsvlllfaGvfllvgaleqtGileala 239
                   +k  W+++ +fa ++ l+++l ++G + +l+
  EHT98254.1 349 iSNKAAWNTFAWFATLVALADGLARVGFIAWLG 381
                 9**************************999986 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 6.7e-09
                 xxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx. RF
      CitMHS   4 lileklrldvvallvlvll....vltiee.alsgiaspiillllgamiigaaleetGlfdrlaakl.lrlaggkrdllvllvlltalls.afvsndgv. 94 
                 +++ ++  +++allv++l+    vl  ++ + +  a+++ + ++ ++ ++ +l+++G++ +l++   + l+g  +++ +++ l++++l   ++  +++ 
  EHT98254.1 319 FATAWIEPAMAALLVIILMlwtgVLNWNDiISNKAAWNTFAWFATLVALADGLARVGFIAWLGKEGgILLQGYDPQISAVVLLIAFFLLhYLFASTTAh 417
                 556669**************999888888778899***************************9864155667666655555555555541333334446 PP

                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  95 vlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraa.....arpglslpnllllalllvgllplvll 167
                 +  ++p++l++a+++ ++++  +++ l ++ +++g++tp Gt + +        + + ++  + + ++++  +++++++
  EHT98254.1 418 TTALLPAMLTIAASIPGINMPvFCLMLCTSLGVMGIITPYGTGPSPIYygsgyLPTKDYWRLGTIFGAIFL-IAMMLIA 495
                 **************99988777*********************88888*****777777777777555554.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3364.04
//
Query:       EHT98255.1  [L=925]
Description: putative NADH:flavin oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-85  285.3   5.6    1.2e-84  284.8   5.6    1.2  1  FAD_binding_2  FAD binding domain
    4.4e-76  256.4   0.0    8.1e-76  255.5   0.0    1.4  1  Oxidored_FMN   NADH:flavin oxidoreductase / NADH oxidase fami
      3e-13   49.9   2.8    1.1e-12   48.0   2.8    1.9  1  FAD_oxidored   FAD dependent oxidoreductase
    1.9e-11   43.7   0.4    5.5e-11   42.2   0.4    1.8  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      2e-10   40.8   0.4    2.6e-06   27.3   0.0    2.6  2  DAO            FAD dependent oxidoreductase
    3.5e-10   39.1   3.9    3.5e-10   39.1   3.9    2.4  2  HI0933_like    HI0933-like protein
    4.1e-09   36.0   3.4    4.1e-09   36.0   3.4    2.4  3  GIDA           Glucose inhibited division protein A
    6.2e-07   29.6   0.1    1.7e-06   28.2   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.2e-06   29.0   2.5    3.3e-06   27.6   0.4    2.8  2  FMN_bind       FMN-binding domain
    7.8e-06   25.3   1.6     0.0051   16.1   0.4    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.4e-05   24.4   6.5    0.00018   20.8   0.4    3.3  3  Thi4           Thi4 family
    9.1e-05   22.9   3.4     0.0049   17.4   0.7    2.8  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00029   20.2   0.1    0.00051   19.4   0.1    1.5  1  FAD_binding_3  FAD binding domain
     0.0011   18.4   0.2     0.0085   15.5   0.0    2.2  2  GMC_oxred_N    GMC oxidoreductase
     0.0017   17.6   0.0     0.0063   15.8   0.0    1.9  2  DHO_dh         Dihydroorotate dehydrogenase
     0.0055   16.2   0.0      0.017   14.6   0.0    1.9  1  His_biosynth   Histidine biosynthesis protein
     0.0077   15.6   0.7     0.0077   15.6   0.7    2.5  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
       0.01   14.9   0.9      0.051   12.6   0.4    2.3  2  Lycopene_cycl  Lycopene cyclase protein
      0.013   14.8   0.4        1.8    7.8   0.1    2.3  2  Amino_oxidase  Flavin containing amine oxidoreductase
      0.061   13.9   0.3       0.22   12.1   0.3    2.1  1  Candida_ALS    Candida agglutinin-like (ALS)
       0.13   12.7   0.5       0.75   10.3   0.0    2.5  2  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.8   5.6   1.4e-87   1.2e-84       1     417 []     483     905 ..     483     905 .. 0.96

  Alignments for each domain:
  == domain 1  score: 284.8 bits;  conditional E-value: 1.4e-87
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv+V+GsG+AGLaAA++a+++G+kv+v+ek++  gg+t  ++ g++a+ ++ qk +gi+ds el  ++tlk++   ++++l + fv+ apea+d+L
     EHT98255.1 483 DVVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIGGNTIKASVGMNAAETRFQKLKGIQDSKELFYEETLKGGKFKNNPALLREFVDLAPEAIDWL 578
                    9*********************************************************************************************** PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEE CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrira 192
                    +++g+ ++        ++  Gg+s + rt++  ad+     + g  l+  lv++++++++d++ +t+++e++ e+g v+G+ v   ++ ++ ri +
     EHT98255.1 579 ADHGIELND-------ITITGGMSID-RTHR-PADR----SAVGGFLISGLVKNINSRNIDVLLETAVEEILFENGAVSGVKVV--DEYNDSRILN 659
                    *********.......999*******.9999.6666....57888899************************************..5555555555 PP

                    S.EEEE-----GG............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TTSSBT CS
  FAD_binding_2 193 k.avvlatgGfgr..allkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrF 285
                       v++atgGf++  +++ ++++++  + ttn +++tG g+a+ +  ga+  d  m e+q+hPt        +  L++e +rg G+ilv + G+rF
     EHT98255.1 660 AkSVIVATGGFSAnrEMVVKYRPELDGFVTTNHKGATGAGIAMLQKIGADTVD--MGEIQIHPTVEQ----TTSYLVSESIRGGGAILVSQAGQRF 749
                    54************************************************999..***********9....88889******************** PP

                    HGGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT................................SSHHHHHHHSHHHHHHHHHCCT......S- CS
  FAD_binding_2 286 mnelasrdvvsrailekeiaeggseanvyldash...............................gldaegleatleaineeaangldkdfgrgid 350
                     ne+++rd vs+ i+    a +++  + +++++                                 ++  +le+tl+++n  ++++ d+dfgr++ 
     EHT98255.1 750 YNEMETRDKVSAQII----ALPEK--SAWIIFDEqvrmnnkaadeyiakgfvisapsvaelavklNMEHRTLEETLQRYNGFVIKQKDEDFGRQTA 839
                    ***************....44454..6699999999999999*****************************************************9 PP

                    TTTSEEE.......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 351 padrpipgpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                     ++    gpfya+++ p++h tmgGv++++ + vld ++q+i+G +A+Gev  gg+hganr gGn +
     EHT98255.1 840 LRHPLSEGPFYAIRIAPGVHHTMGGVTINTATAVLDTNKQVINGAWACGEVV-GGIHGANRIGGNAV 905
                    9999888*********************************************.************76 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.5   0.0   9.4e-79   8.1e-76       4     338 ..       9     338 ..       6     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 255.5 bits;  conditional E-value: 9.4e-79
                   S-EEETT.EEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEEE CS
  Oxidored_FMN   4 kPikign.mtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvvq 99 
                   +P+++     LknR++mapmt   +  +g+v+   ++eyy+ ra   ++ +i+e++f++pk+ +f++a +i ++++i++++ +++a++e+gs +++q
    EHT98255.1   9 NPLTLPRgAVLKNRLIMAPMTTCTGFYDGTVTS-ELVEYYRARAG-SIGTVIVECCFIDPKGPAFPGAIAIDSDNKIPGLKRIADAIKEKGSTAILQ 103
                   7888877789*******************8877.99********9.899999********************************************* PP

                   EE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STTSS CS
  Oxidored_FMN 100 lwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDeygG 196
                   ++h+Gr ++ e    +    p +p+a+ a+ e +++   +++lt+ee+  +i++f +A +rai+AgfDgVeihgan YL++qF+sp+sn+r D++gG
    EHT98255.1 104 IYHGGRMVEPELIGGKT---PVAPSAIAAPREGATT---PRALTAEEVDTMITKFGDAVNRAIKAGFDGVEIHGANTYLIQQFYSPNSNQREDKWGG 194
                   ********999988887...8888899999664444...46******************************************************** PP

                   SHHHHHHHHHHHHHHHHHHH-SSS......EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTTHHH.HH CS
  Oxidored_FMN 197 slenRarFllevvdaVkeavgeer......vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqeknt.ef 286
                   s +nRarF+lev+d   +  +e +      +gyR+Spe++  +g+ f +t   ++ll++l+ r +d+ + ++ ++  p   +        ek+    
    EHT98255.1 195 SRDNRARFPLEVLDITHKM-AERFahnsfiIGYRFSPEELEVPGIRFDDT---MYLLEKLAARGLDYVHFSVGQLMRPSIVDTTDPTPLIEKFIaMR 287
                   *************944433.333344559*********************...*************************9988888777767555277 PP

                   HCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCC CS
  Oxidored_FMN 287 vkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkg 338
                      ++k+p+i+vg+  ++e+a++ + e+  dLva+g++ +a pd+++++ ++
    EHT98255.1 288 SETLAKVPVIGVGGVVNKEDAEK-ALEKGYDLVAVGKACIAYPDWTDRIINN 338
                   8889***************5555.5555679*****************9765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   2.8   1.3e-15   1.1e-12       1     144 [.     483     668 ..     483     669 .. 0.71

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.3e-15
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdig.nkaee.qvvtgiareflerlrqrgga...........rlkkrskwn.. 82 
                   DvvVvG+g aG+aAAi+A  +Gakv+++e+ + +GG++ ++ v++    ++ ++ + ++   + f+e+  + g+            +          
    EHT98255.1 483 DVVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIGGNTIKASVGMNAAeTRFQKlKGIQDSKELFYEETLKGGKFknnpallrefvD-------Lap 572
                   9**************************************999865555233333655555555566666552222222233333321.......033 PP

  FAD_oxidored  83 .............................tfep.evakavleeml...aeagvtvllntrlvevekegkriesvtveske.grktirAkvfiDATg 144
                                                + +   v   ++  ++   +  +++vll+t ++e+  e++ + +v+v ++    + ++Ak +i ATg
    EHT98255.1 573 eaidwladhgielndititggmsidrthrPADRsAVGGFLISGLVkniNSRNIDVLLETAVEEILFENGAVSGVKVVDEYnDSRILNAKSVIVATG 668
                   344444566777778888899999995553333034444455555999888****************999******998855999*******9997 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.4   6.4e-14   5.5e-11       1     112 [.     482     673 ..     482     705 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 6.4e-14
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias......................................... 57 
                  +dvvv+G+G AGlaaa+++   gakv+++e+  t+ ++++  s  + +++ + + ++                                         
   EHT98255.1 482 YDVVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIGGNTIKASVGMNAAETRFQKLKgiqdskelfyeetlkggkfknnpallrefvdlapeaidwla 579
                  69***************************87777766666666666666666666669999************************************* PP

                  ...................................HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEEC..TCEEEEEESEEEE---E.EE- CS
                  ...................................xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxx RF
  Pyr_redox_2  58 ...................................evvkklnqg.ielllgeevvkidpgkkkvklekkke..gdeekiaydklvlAtGs.spr 112
                                                       vk++n+  i++ll++ v +i ++++ v   k ++  +d + + ++++++AtG+ s++
   EHT98255.1 580 dhgielndititggmsidrthrpadrsavggflisGLVKNINSRnIDVLLETAVEEILFENGAVSGVKVVDeyNDSRILNAKSVIVATGGfSAN 673
                  ***********************************8888999888******99*************99998999999************62433 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     3e-09   2.6e-06       1      93 [.     483     600 ..     483     609 .. 0.72
   2 !   10.9   0.1    0.0003      0.25     149     205 ..     613     672 ..     609     696 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3e-09
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH...........................HHHHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas...........................elarlslealeelre 70 
                 dvv++G+G +Gl++A ++  +g  V+++ek + +g  +  ++ g+ ++  r +++                             e+++l+ ea+++l++
  EHT98255.1 483 DVVVVGSGGAGLAAAIQAHDEGakVVVIEKMPTIGGNTIKASVGMNAAETR-FQKLKgiqdskelfyeetlkggkfknnpallrEFVDLAPEAIDWLAD 580
                 9*****************87789************5555555577777665.44333577888888899999999999997666666666666665544 PP

                 HHHHHSSTTSEEEEEEEEEESSH CS
         DAO  71 leeelgididyrrtGllslaade 93 
                 +  el+   d   tG +s+ +++
  EHT98255.1 581 HGIELN---DITITGGMSIDRTH 600
                 443333...57777777776654 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEEE....EEEEEEE--GGGHH CS
         DAO 149 taalaraaealGveilegtevtgleeedgkvwgve..rttpgend....aadavVnaaGawsd 205
                 + +l + + ++ +++l++t v+++  e+g v+gv+  +   + nd     a+ v++a+G +s 
  EHT98255.1 613 ISGLVKNINSRNIDVLLETAVEEILFENGAVSGVKvvD---EYNDsrilNAKSVIVATGGFSA 672
                 5678899999*************9788899****8652...222123334577******9984 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   3.9   4.1e-13   3.5e-10       1     167 [.     482     672 ..     482     675 .. 0.74
   2 ?   -3.1   0.1       2.7   2.3e+03     356     385 ..     861     891 ..     859     897 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 4.1e-13
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEET........T-SGGGEEES...STTTTHHH..HHHS-H..HHHHHHH CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnl........seepeellsrypenpkflksa..lsrftn..edlialv 86 
                  +dv+v+G G AGl aAi+a+++g++V+++ek++++g     +  G +N   +        + ++e + ++  +++kf ++   l++f     + i+++
   EHT98255.1 482 YDVVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIGGNTIKASVG-MNAAETrfqklkgiQDSKELFYEETLKGGKFKNNPalLREFVDlaPEAIDWL 578
                  59*********************************9887777676.566654111111113455667777778888876544599997522589**** PP

                  HHTT--EEE-S.TT.....EEE.ETT.-CHH..HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.....TTEEEEESEEEE----SS- CS
  HI0933_like  87 eelgvelkeed.sg.....rlF.pvsdkaed..ivdallkelkeagvklrletevksvekeedgkfrvkt.k...seeeleadklvlAtGGlSi 167
                  +++g+el+  +  g     r   p++++a    +++ l+k+++++++++ let+v+++  e++ +  vk+ +   +++ l+a+++++AtGG S+
   EHT98255.1 579 ADHGIELNDITiTGgmsidRTHrPADRSAVGgfLISGLVKNINSRNIDVLLETAVEEILFENGAVSGVKVvDeynDSRILNAKSVIVATGGFSA 672
                  ******9854323311111444366656543449************************888888877777534548899************997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.7
                  EEEEE-GGGB-TTT-.BBTTSTTEEE-GGGB CS
  HI0933_like 356 TaGGVdlkevssktm.eskkvpgLffaGEvl 385
                  T+GGV+++   +    + + ++g + +GEv+
   EHT98255.1 861 TMGGVTINTATAVLDtNKQVINGAWACGEVV 891
                  8999999887665440345578999999997 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   3.4   4.8e-12   4.1e-09       1     160 [.     483     679 ..     483     714 .. 0.80
   2 ?   -2.6   0.0       2.6   2.2e+03     262     307 ..     742     796 ..     717     801 .. 0.75
   3 ?   -4.2   0.5       8.1   6.9e+03     377     388 ..     912     923 ..     904     924 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.8e-12
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE..........................ES-GGGTT--SSSSEEE-T...THHHHHHHHHHHT-SHHHHHHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi..........................thkldtiaelsCnpsiggi...akgllvrEidalggliikaadka 70 
                 dv+V+G G AG++AA++a   Gakv+ i                           + +++  el + ++++g     +  l rE   l  + i +   +
  EHT98255.1 483 DVVVVGSGGAGLAAAIQAHDEGAKVVVIekmptiggntikasvgmnaaetrfqkLKGIQDSKELFYEETLKGGkfkNNPALLREFVDLAPEAIDWLADH 581
                 79**************************7777666666666666666666644444444445555555555548988899******************* PP

                 EEEEEEESTTS-CCC-EEEEEE-HHHHHHHHHHHHHT...STTEEE.EES-EEEEEECTTEEEEEEE....TTS-EEEECEEEE--TT-BT-EEEETT CS
        GIDA  71 giqfrilNrskGpavralraqvdrelyskevteklen...epnlei.ieeeveeliveekkvkgvvt....edgetikakavviatGtflkgkihige 160
                 gi+++    + G +++ +   +dr+++   +   l +   + n+++ +e  vee++ e++ v+gv+     +d ++++ak+v++atG f++ + ++ +
  EHT98255.1 582 GIELNDITITGGMSIDRTHRPADRSAVGGFLISGLVKninSRNIDVlLETAVEEILFENGAVSGVKVvdeyNDSRILNAKSVIVATGGFSANREMVVK 679
                 *****999******************9988766554435578999726889*************8762222567899************988777655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.6
                 B--S-CCC-SSTCC......CCCCSTT-S--EEE...EEESSTT--EEEEET--- CS
        GIDA 262 ieelgprycpsied......kivrladkeshqvf...Lepegleteliylvgfst 307
                 + + g+r  + +e+      +i+ l++k++ ++f   ++ ++++ +++  +gf  
  EHT98255.1 742 VSQAGQRFYNEMETrdkvsaQIIALPEKSAWIIFdeqVRMNNKAADEYIAKGFVI 796
                 5666777777777666677799999999999995444889999999999999865 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 8.1
                 HHHHHHHHHHHH CS
        GIDA 377 GllAGinaarka 388
                 G+lAG naa+ a
  EHT98255.1 912 GILAGANAAAFA 923
                 999****99865 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1     2e-09   1.7e-06       1      59 [.     486     544 ..     486     549 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2e-09
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHH CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyyp 59 
                    +vG+G +Gl+aA  ++++g++v+++ek + +GG+   ++v+ +++++  + ++g+++++
     EHT98255.1 486 VVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIGGNTIKASVGMNAAETRFQKLKGIQDSK 544
                    8*********************************9999888877777777777776555 PP

>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   3.9e-09   3.3e-06       6      68 ..     395     461 ..     392     462 .. 0.70
   2 ?   -1.1   0.0       3.4   2.9e+03      14      37 ..     640     671 ..     635     713 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 3.9e-09
                 EEEEEEEETTTSBEEEEEEEESSS-TTTGGG.........CTTHHHH.....SSEEETCTTBHHHHHHHHHHHHHHH CS
    FMN_bind   6 ikvlvtvkdgdgtItgievlehsETpglgsk.........avkkdgg.....dqevDaiSGATissravkdavnaal 68 
                 +k+ vt+ d+d +It+i+++   +T  +  +         +     +     + +vDai+GAT  s+a+k+av +a+
  EHT98255.1 395 LKINVTL-DTD-RITDISLVP-DDTLDV--DftttfeslrN-----RilvanSPHVDAITGATTQSEALKKAVSRAM 461
                 7889999.867.9******82.244333..13334443330.....144444668********************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.4
                 TTTSBEEEEEEEE.SSS-TTTGGG.........C CS
    FMN_bind  14 dgdgtItgievle.hsETpglgsk.........a 37 
                 +  g ++g++v++ ++++  l +k         +
  EHT98255.1 640 N--GAVSGVKVVDeYNDSRILNAKsvivatggfS 671
                 4..5599999986144655553333455444440 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4   5.9e-06    0.0051       1      32 [.     485     516 ..     485     547 .. 0.88
   2 !    7.8   0.0     0.002       1.7      93     145 ..     622     680 ..     616     694 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.9e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.ni 32 
                  +++G G aGlaaai++ + g  +++++Ek  +i
   EHT98255.1 485 VVVGSGGAGLAAAIQAHDEGA-KVVVIEKMpTI 516
                  79*******************.7******8555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
  Pyr_redox_3  93 sfelpiklfeeVesvkked...egfevetske...tyeAkkviiAtGefdkPnklnipG 145
                  s ++++ l++ Ve++  e+   +g +v  + +    ++Ak+vi+AtG f+  + + ++ 
   EHT98255.1 622 SRNIDVLLETAVEEILFENgavSGVKVVDEYNdsrILNAKSVIVATGGFSANREMVVKY 680
                  5667777777777777654122233333222223389*************999888775 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.4   2.1e-07   0.00018      18      57 ..     482     520 ..     473     534 .. 0.89
   2 ?    1.1   0.1      0.22   1.9e+02     105     167 ..     617     668 ..     607     688 .. 0.70
   3 ?    3.6   0.1      0.04        34     197     232 ..     867     901 ..     857     903 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.1e-07
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57 
                  Dvv+vG+G +GL+aa     + + kv+++e+  ++GG +
  EHT98255.1 482 YDVVVVGSGGAGLAAAIQAHDE-GAKVVVIEKMPTIGGNT 520
                 7*************99887777.**************976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                 HHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--G CS
        Thi4 105 skvlqlanvkllnavaveDlivregegvaGvvinwtlvelahdtqscvDPlvirakvvvdatG 167
                 +k ++  n+ +l  +ave++++ +   v+Gv     +v+         D  +++ak v+ atG
  EHT98255.1 617 VKNINSRNIDVLLETAVEEILFEN-GAVSGVK----VVDEYN------DSRILNAKSVIVATG 668
                 56777799999999*****99999.5677763....344333......555666655555555 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.04
                 HHHHHHHHHHHECEEETTEEE-THHHHHHHT-EB-- CS
        Thi4 197 aekaedaivkktrevvpnlyvaGmevaevdganRmG 232
                  ++a +a++ + ++v+++ +++G  v  ++ganR+G
  EHT98255.1 867 INTA-TAVLDTNKQVINGAWACGEVVGGIHGANRIG 901
                 5555.5789999***********************9 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.7   5.8e-06    0.0049       2      37 ..     484     520 ..     483     541 .. 0.82
   2 ?    5.1   0.1     0.041        35      46      78 ..     616     648 ..     608     651 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-06
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TT CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rl 37 
                 vvvvG+G  gl +A  +++ g+kV v+e ++++  + 
  EHT98255.1 484 VVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIGgNT 520
                 8*******************************99433 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.041
                 HHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  46 lqeklekngievllntkveeiegsedgvesvkl 78 
                 l +++  ++i+vll+t veei  ++  v++vk+
  EHT98255.1 616 LVKNINSRNIDVLLETAVEEILFENGAVSGVKV 648
                 56788899**************77766999997 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     6e-07   0.00051       2      37 ..     482     517 ..     481     678 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6e-07
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37 
                    +dV++VG+G aGl +a   +  G +vv++ek+ t  
     EHT98255.1 482 YDVVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPTIG 517
                    79*****************************98765 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.53   4.5e+02       1      34 [.     482     514 ..     482     544 .. 0.81
   2 !   15.5   0.0   9.9e-06    0.0085     199     258 ..     616     671 ..     593     674 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.53
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleagg 34 
                  +d +v+g+G ag + Aa  + d+ ++v+v+e  +
   EHT98255.1 482 YDVVVVGSGGAGLA-AAIQAHDEGAKVVVIEKMP 514
                  68899*********.999999*********9654 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 9.9e-06
  GMC_oxred_N 199 LrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGaln 258
                  L+++++  n ++l ++ +e i++e  ++ + GV++ d+ +    ++ +ak v+va G ++
   EHT98255.1 616 LVKNINSRNIDVLLETAVEEILFE--NGAVSGVKVVDEYND--SRILNAKSVIVATGGFS 671
                  67788888****************..*************99..99***********9875 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.9   4.2e+03      46      71 ..     128     153 ..     125     157 .. 0.84
   2 !   15.8   0.0   7.3e-06    0.0063     235     288 ..     284     336 ..     278     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.9
                 SS-B--S-S--EEEETTCTEEEE--- CS
      DHO_dh  46 pkpqeGnpkPrvfrlkedrsvlNslG 71 
                 + p+eG  +Pr +  +e  +++ ++G
  EHT98255.1 128 AAPREGATTPRALTAEEVDTMITKFG 153
                 5799*******999999888888776 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.3e-06
                 HHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHH CS
      DHO_dh 235 relykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkik 288
                  ++++++  ++p+IgvGG+   eDa   +e G  lv+v+ a   + p + ++i+
  EHT98255.1 284 IAMRSETLAKVPVIGVGGVVNKEDAEKALEKGYDLVAVGKAC-IAYPDWTDRII 336
                 578899999******************************998.56677777776 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05     0.017      73     130 ..     293     347 ..     241     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                   SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEE CS
  His_biosynth  73 fipvqvGGGIrsledveelleagadkviigtaavknpelikelaekfgsqkivvaiDa 130
                   ++pv   GG+ + ed+e++le g+d v +g a +  p++ ++++++   +++ + iD+
    EHT98255.1 293 KVPVIGVGGVVNKEDAEKALEKGYDLVAVGKACIAYPDWTDRIINN---EHLELYIDS 347
                   378888899******************************9999873...466666665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       1.7   1.5e+03      28      51 ..     291     315 ..     285     324 .. 0.76
   2 !   15.6   0.7     9e-06    0.0077      13      62 ..     465     515 ..     456     550 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.7
                  --EEEEES.TSHHHHHHHHHHHHTT CS
  AlaDh_PNT_C  28 pakvlviG.gGvaGlqAiatakglg 51 
                   akv viG gGv+  + ++ a + g
   EHT98255.1 291 LAKVPVIGvGGVVNKEDAEKALEKG 315
                  599*****55688888887777666 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9e-06
                  CTSEEETTCEETCB.---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C  13 fggkgtlaGgvpgv.epakvlviGgGvaGlqAiatakglgakVtvlDvrpa 62 
                  ++++++  Gg p + ++  v+v+G G aGl+A+  a+  gakV+v+++ p+
   EHT98255.1 465 NKAHVIEEGGNPNApQQYDVVVVGSGGAGLAAAIQAHDEGAKVVVIEKMPT 515
                  5556666666665325668**************************998775 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4     6e-05     0.051       1      39 [.     483     517 ..     483     536 .. 0.90
   2 ?   -0.7   0.0      0.69   5.9e+02     114     150 ..     648     678 ..     618     691 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfp 39 
                    Dvvv+G+G Agl+ A +      g kvv+ie  p +  +
     EHT98255.1 483 DVVVVGSGGAGLAAAIQA--HDEGAKVVVIEKMPTI--G 517
                    9************99999..99********998877..4 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.69
  Lycopene_cycl 114 eeeageslvvleggrkirarlvvdarglaslkkarrl 150
                     ++        ++ r ++a+ v++a+g +s+++++ +
     EHT98255.1 648 VVD------EYNDSRILNAKSVIVATGGFSANREMVV 678
                    222......35678899**********9998876555 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0021       1.8       2      29 ..     492     519 ..     492     526 .. 0.95
   2 ?    4.8   0.0     0.016        14     212     269 ..     616     679 ..     595     694 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
                    HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGR 29 
                    aGLaaA q ++ G +V+v+E  + +GG 
     EHT98255.1 492 AGLAAAIQAHDEGAKVVVIEKMPTIGGN 519
                    8**************************6 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
                    HHHHHHHTTTTEEEETSEEEEEEEE.....ETTCEEEEET..TSTEEEESEEEE-S-HHHHH...SSE CS
  Amino_oxidase 212 lpealaeelrgldirlntrVkeikr.....egdgvtvtle..dgevveaDaVvvTvplgvlk...ail 269
                    l++++ +  r+ d++l+t V ei       +g  v+v  e  d++ ++a++V+v++    ++    ++
     EHT98255.1 616 LVKNINS--RNIDVLLETAVEEILFengavSG--VKVVDEynDSRILNAKSVIVATGGFSANremVVK 679
                    5555555..8889************6653333..4444443266666********9876666455445 PP

>> Candida_ALS  Candida agglutinin-like (ALS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00026      0.22       1      30 [.      29      60 ..      29      61 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00026
  Candida_ALS  1 TTvTstwtGstttTtTit..agPGgTgTViVy 30
                 TT T +++G++t+       a +G++gTViV+
   EHT98255.1 29 TTCTGFYDGTVTSELVEYyrARAGSIGTVIVE 60
                 899*******9888553347777********7 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       4.2   3.5e+03       9      43 ..     293     327 ..     290     407 .. 0.61
   2 ?   10.3   0.0   0.00087      0.75       7      39 ..     481     513 ..     478     581 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.2
  NAD_binding_7   9 kvlvvG.gGevAarkvrklleagakvtvvapevkee 43 
                    kv v+G gG v  + ++k le+g +++ v ++   +
     EHT98255.1 293 KVPVIGvGGVVNKEDAEKALEKGYDLVAVGKAC-IA 327
                    566788344556677888888888888888774.22 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00087
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvape 39 
                    +  v+vvG G  ++  + +  ++gakv+v+ + 
     EHT98255.1 481 QYDVVVVGSGGAGLAAAIQAHDEGAKVVVIEKM 513
                    5679*************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 6204.36
//
Query:       EHT98256.1  [L=351]
Description: thiamine biosynthesis lipoprotein ApbE-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-75  251.9   0.0    8.8e-75  251.6   0.0    1.0  1  ApbE      ApbE family


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.6   0.0   4.9e-79   8.8e-75       1     258 []      15     294 ..       8     294 .. 0.92

  Alignments for each domain:
  == domain 1  score: 251.6 bits;  conditional E-value: 4.9e-79
                 TTEEEEEEEE.....HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCT.S.S-EEE-HHHHHHHHHHHHHHHHTTTSS-TTTHHHHHHHCTTSGG.----H CS
        ApbE   1 mgttvsitlyg....leaaieaelerlekllsryrpdSelsrlNra.k.kevkvspelaellkaaleiseltdgafdptvgplvklwgfgeekarvpsa 93 
                 mg ++ ++ly+    l+ ++++ ++++e+ l+ +r++Se++++N+a + ++v+vs+ +++l+++al +s l +  f+ ++gplvk w++g++ ++vp++
  EHT98256.1  15 MGSPILLKLYEhneaLAGQVFRLIKQYENVLTVNREHSEVMAINHAaGqHPVSVSQPVFRLIERALAVSLLPESSFNLAIGPLVKCWKIGFQGKSVPAR 113
                 788888999844566668999***********************8875488**************************************999889**** PP

                 HHHHHHHTT.-GGGEEE........EESTT..-----TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC....-ECT-EEEEEE-TT.S..SEEE CS
        ApbE  94 eeidaalalvgykkiel........lakkgpgmkLDlggiaKGyavdrvaellka.giksalvnlGGdiralG....pdgkpwrvgiedPr.a..ella 176
                 +ei+a lal+  ++iel        l+++g  m++Dlg+iaKGy++drv ++l++ g++sal+nlGG++ +lG    + +++w +g+++P+ a  +ll+
  EHT98256.1 114 AEIQAKLALTHPENIELdaanrsvfLKQAG--MEIDLGAIAKGYIADRVQAFLHEqGVDSALINLGGNVQTLGappdAPQEGWAIGLKKPFaAsdALLG 210
                 ***********************8666665..******************************************8553335**********626799** PP

                 EEEESSSEEEEEETTSSEEE..TEEEES-B-TTTSSB---SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHCCGGGTCTEEE CS
        ApbE 177 vlslsddavaTSGdyeryfe..gkryhHiidprtgyPaesglasvtViads.alADalaTalfvlgeekalellekkeegveall 258
                 v+++++++v+TSG+yeryfe  g+ yhHi+d +tgyP ++ l+svt+++d+ ++ D+++T ++ +g ek+ ++l+  ++g+ea++
  EHT98256.1 211 VINVTNKSVVTSGIYERYFEqeGVCYHHILDRHTGYPLDNALLSVTIVSDHsIDGDIFTTLIYGMGIEKGSDYLKA-YPGIEAIF 294
                 *****99************667**************************9855***********************5.678**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2586.49
//
Query:       EHT98257.1  [L=239]
Description: DNA-binding response regulator in two-component regulatory system with DcuS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-20   71.3   0.0    9.6e-20   70.8   0.0    1.2  1  Response_reg  Response regulator receiver domain
     0.0044   17.3   0.0       0.01   16.1   0.0    1.6  1  CitT          Transcriptional regulator
  ------ inclusion threshold ------
      0.046   14.1   0.0      0.085   13.2   0.0    1.4  1  Rrf2          Transcriptional regulator
       0.12   11.3   0.0       0.14   11.0   0.0    1.1  1  CReP_N        eIF2-alpha phosphatase phosphorylation constitu


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.1e-23   9.6e-20       1     111 [.       4     117 ..       4     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 2.1e-23
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHH..ESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeek..vdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkaga 94 
                   vl+vdDd +v+el r ++   +g++ +++a++  +a e l + +  vdlillDi m++ +Gl+ll e+r   + + vii++++++ ++++  l++g+
    EHT98257.1   4 VLVVDDDAMVAELNRCYIGqIDGFTCCGTASTLLQAKERLLQTDpaVDLILLDIYMQQENGLDLLPELRSAGRPIDVIIISSAADAATIKTSLNYGV 100
                   8******************77***9999**********99666668*************************************************** PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   +d+l Kpf+ ++  +al
    EHT98257.1 101 VDYLIKPFQFSRFEEAL 117
                   *********99998876 PP

>> CitT  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.3e-06      0.01       3      27 ..     135     159 ..     135     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.3e-06
        CitT   3 QrdVDrLFqraatgqpasgrLPKGI 27 
                 Q+dVD+L++ +   + +  rLPKG 
  EHT98257.1 135 QSDVDQLLHGNPANANETKRLPKGL 159
                 9****************9******6 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.085      14      55 ..     168     208 ..     160     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                 HHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2  14 llyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55 
                  l++ ++++ e +s++e+a+++nis++ ++k l  L++++++
  EHT98257.1 168 CLWIDAHPGTE-FSTDELATEVNISRVSCRKYLIWLAQSNIL 208
                 46778888887.**********************99999876 PP

>> CReP_N  eIF2-alpha phosphatase phosphorylation constitutive repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.2e-05      0.14     161     231 ..      37     112 ..      18     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.2e-05
      CReP_N 161 lkakgraL..dpaahaflLe...qqlWgveLlpsslqarllsdrelgsspsgplnvqrlgnfsvvsylLnpsyldc 231
                 l+ak+r L  dpa++ +lL+   qq  g++Llp    a    d  + ss++++  ++   n+ vv yl++p ++  
  EHT98257.1  37 LQAKERLLqtDPAVDLILLDiymQQENGLDLLPELRSAGRPIDVIIISSAADAATIKTSLNYGVVDYLIKPFQFSR 112
                 55666655449********9888999********99999999****************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1752.04
//
Query:       EHT98258.1  [L=543]
Description: fumarate respiration sensor kinase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-23   82.8   1.0    1.2e-21   77.3   0.8    2.3  2  sCache_3_2   Single cache domain 3
    7.2e-17   61.9   0.0    1.5e-16   60.9   0.0    1.6  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.7e-12   44.6   2.4    2.2e-11   43.3   2.4    1.7  1  SPOB_a       Sensor_kinase_SpoOB-type, alpha-helical domain
    2.2e-10   40.4   0.0    9.8e-08   31.8   0.0    2.4  2  HATPase_c_5  GHKL domain
    4.1e-06   26.8   0.0    1.3e-05   25.1   0.0    1.9  1  PAS          PAS fold
    0.00012   22.5   0.0       0.65   10.5   0.0    2.5  2  sCache_3_3   Single cache domain 3
    0.00022   21.2   0.0    0.00054   19.9   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00027   21.2   0.1     0.0015   18.8   0.0    2.2  2  PAS_4        PAS fold
    0.00044   20.2   0.0     0.0013   18.7   0.0    1.8  1  PAS_8        PAS domain
     0.0067   16.1   1.3      0.015   14.9   0.2    2.1  2  dCache_3     Double sensory domain of two-component sensor ki
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.022   14.6   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
      0.053   13.7   0.1       0.62   10.2   0.0    2.3  2  PAS_7        PAS fold
      0.076   13.6   0.0       0.32   11.6   0.0    2.1  1  PAS_10       PAS domain
       0.16   12.2   1.1       0.46   10.7   1.1    1.7  1  DUF2530      Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.8   9.2e-25   1.2e-21      10     137 ..      52     178 ..      44     180 .. 0.92
   2 ?    3.1   0.0     0.076        98      85     135 ..     281     331 ..     267     335 .. 0.72

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 9.2e-25
  sCache_3_2  10 leeralalatsvagsrivrvaltdrapesglqalvddvrritgvdyvvitDeegrvlahpdpaevgrklsgpataaalkagrayvgtvtgtlgpslrvk 108
                  +++ala+a+++a+s++ ++alt+++ ++ +q++++++r+  ++ +vv+tD +g++  hp+p++v +++  + +++ + +g++ v +  g l+++lrv+
  EHT98258.1  52 VKDKALAVARTLADSPEIQQALTQPDGSKIIQPIAQATRKRNDLLFVVVTDMRGIRFSHPNPDAVNQHF-VGEDINPALQGHENVAVNHGVLVEALRVF 149
                 4678*****************************************************************.7788888888888888888********** PP

  sCache_3_2 109 lPvfdadgrviGivsvGvkqdeisaelre 137
                 +Pvf a+++ iG+v +G++ ++++a++ +
  EHT98258.1 150 TPVFNARHQQIGVVAIGISVNDVAAQVTK 178
                 ************************99976 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.076
  sCache_3_2  85 aalkagrayvgtvtgtlgpsl.rvklPvfdadgrviGivsvGvkqdeisael 135
                  al  g+a +++ +  +g+ l    +Pv++ + ++iG+vs   +++eis+ +
  EHT98258.1 281 DALHDGKAAYDEELNVRGKILiSNTVPVRS-RSSIIGAVSTFRDKTEISQLM 331
                 56666777777776666666515689****.8*******9888887777765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   1.2e-19   1.5e-16       5     110 ..     434     536 ..     430     538 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 1.2e-19
                 HHHHHHHHHHHHHHHH.HS.TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   5 rLrqiisnlvdNavkf.at.kageieveikaseddlvisveDnGiGipkedlkklfe.kfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                  L  ++ nl++Na+++  +  +gei+v ++ ++++l+ +v+D+G+Gip ++l  +fe   s+      +g+ +G+Gl + k+ +e +gG+++vesepg 
  EHT98258.1 434 ALITVLGNLIENALEAlDPdMDGEIHVMLHYQNGWLSCEVSDDGPGIPADQLATIFErGVST------KGEDRGVGLFLLKQQTESLGGNVSVESEPGV 526
                 68899**********9622578899999998789***********************55555......99***************************** PP

                 EEEEEEEEES CS
   HATPase_c 101 Gttftftlpl 110
                  t+f ++lp 
  EHT98258.1 527 YTQFLVQLPW 536
                 ****999985 PP

>> SPOB_a  Sensor_kinase_SpoOB-type, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   2.4   1.7e-14   2.2e-11       3      56 ..     331     384 ..     329     390 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.7e-14
      SPOB_a   3 keeikelkeliklLrsqRHDflNhLQvIsGylqLgkydkaeeyieevvkelkee 56 
                 +++++ + +++++Lr   H+f+N+L+vI G+l++++y + eeyi + ++++++e
  EHT98258.1 331 MQRLDGMVNYVDALRERSHEFMNKLHVILGLLHMKNYAQMEEYILKTANNYQTE 384
                 5667778899**************************************999988 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0094        12      31      83 ..     362     414 ..     350     421 .. 0.87
   2 !   31.8   0.0   7.6e-11   9.8e-08       5      96 ..     434     529 ..     431     534 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0094
  HATPase_c_5  31 IrltvrekkksliisieNsyegekkklesskskkeehGiGlksireivkkykg 83 
                  ++++   + + +i++  N+y+ e+++l ++ ++    G+ l++i++++++ ++
   EHT98258.1 362 LHMKNYAQMEEYILKTANNYQTEIGSLLQKIKSPVIAGFLLSKINRVTDEGHQ 414
                  567777778889***************999999*************9987665 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 7.6e-11
  HATPase_c_5   5 dlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg....ekkkless..kskkeehGiGlksireivkkykgnlsieaedglFtl 96 
                   l+++lgnl++NA+ea +     + +I++ ++++++ l  +++    g    +  +++++  ++k+e++G+Gl  +++ +++ +gn+s+e e g++t+
   EHT98258.1 434 ALITVLGNLIENALEALDPDM--DGEIHVMLHYQNGWLSCEVSDDGPGipadQLATIFERgvSTKGEDRGVGLFLLKQQTESLGGNVSVESEPGVYTQ 529
                  5899*************9855..89******************99877655444555544448999*****************************997 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     1e-08   1.3e-05       1     112 [.     222     323 ..     222     324 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1e-08
                 HHHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEET CS
         PAS   1 edlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrda 99 
                 e+++ail+s+ +++++vD + r++++N+aa +ll  +  e+    l++++++e +a++  +l+ +l++g+ + ++e +++      + l  +++pvr++
  EHT98258.1 222 EERQAILDSIKEGVIAVDDQSRVSLINQAASQLLKETTREAF---LSGDRVPE-NAQMLTHLRDALHDGKAAYDEELNVRG-----KILISNTVPVRSR 311
                 589*******************************98886666...44444443.466999************999999999.....9999999****** PP

                 TEEEEEEEEEEEE CS
         PAS 100 ggeilgflgvlrd 112
                 ++ i g++ ++rd
  EHT98258.1 312 SSII-GAVSTFRD 323
                 9865.******99 PP

>> sCache_3_3  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00092       1.2      75     106 ..     147     178 ..     130     179 .. 0.91
   2 !   10.5   0.0   0.00051      0.65      51     105 ..     278     332 ..     221     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00092
  sCache_3_3  75 taYePlkdadgkviGmlfvGlpeeevqalike 106
                  +++P+++a+ + iG++ +G+++++v+a++++
  EHT98258.1 147 RVFTPVFNARHQQIGVVAIGISVNDVAAQVTK 178
                 5789**********************998865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00051
  sCache_3_3  51 vaeavlkkGet.ysgraeilgkkyltaYePlkdadgkviGmlfvGlpeeevqalik 105
                   +++l +G+  y ++ ++ gk  ++  +P++  + ++iG++ + ++++e+ +l++
  EHT98258.1 278 HLRDALHDGKAaYDEELNVRGKILISNTVPVRS-RSSIIGAVSTFRDKTEISQLMQ 332
                 567899****99*********************.999***********99999876 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.2e-07   0.00054      42     109 ..     445     511 ..     428     523 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.2e-07
  HATPase_c_2  42 NavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglv 109
                  Na e+  ++  +g+++v l +++++l +ev+D+Gpg ++ +l+   e + +++++ +G+Gl+l+k+ +
   EHT98258.1 445 NALEALDPD-MDGEIHVMLHYQNGWLSCEVSDDGPGIPADQLATIFERGVSTKGEDRGVGLFLLKQQT 511
                  666666664.459***********************999988888888889************99865 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8   2.3e+03      82     105 ..     146     169 ..     114     173 .. 0.69
   2 !   18.8   0.0   1.2e-06    0.0015       1     107 [.     228     326 ..     228     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
       PAS_4  82 elrllPlrdesGevigvlvisrDi 105
                 +  ++P+++++ + igv++i++ +
  EHT98258.1 146 LRVFTPVFNARHQQIGVVAIGISV 169
                 344588888888888888887765 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.2e-06
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpee....daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGev 95 
                 lds+ ++++++d+++rv  +N+aa +        ll +t +e +  +      a+  ++lr +l  +++++++e   l+ +++++  + +P+r +s   
  EHT98258.1 228 LDSIKEGVIAVDDQSRVSLINQAASQ--------LLKETTREAFLSGdrvpENAQMLTHLRDALHDGKAAYDEE---LNVRGKILISNTVPVRSRSSI- 314
                 7999******************9555........6666666544444355568889999999999999999999...56679**********976666. PP

       PAS_4  96 igvlvisrDiTe 107
                 ig++ ++rD Te
  EHT98258.1 315 IGAVSTFRDKTE 326
                 *********998 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     1e-06    0.0013       4      36 ..     225     257 ..     223     295 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1e-06
       PAS_8   4 ralfesspdgiavvdlgdrivdvNqaalellGy 36 
                 +a+++s+ +g++ vd++ r+  +Nqaa +ll  
  EHT98258.1 225 QAILDSIKEGVIAVDDQSRVSLINQAASQLLKE 257
                 689************777*************63 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   1.2e-05     0.015      23     152 ..      53     178 ..      48     180 .. 0.83
   2 ?   -2.7   0.0         3   3.8e+03     132     146 ..     195     209 ..     185     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
    dCache_3  23 edqllallelvasspgvaeaisegdreqlerlldsiwndlg.leqivlldadgtvilrlhepskfgdslslfrl.lirsvlqgeealagievgdagctf 119
                 +d++la ++ +a sp++++a+ + d++++ + ++ +    + l  +v++d  g ++++    +   ++++ f    i+ +lqg+e++a+     +  ++
  EHT98258.1  53 KDKALAVARTLADSPEIQQALTQPDGSKIIQPIAQATRKRNdLLFVVVTDMRG-IRFS---HPNPDAVNQHFVGeDINPALQGHENVAVNHGVLV-EAL 146
                 5788899999***********99999988888887765555577777777777.6677...346666666665457**************99999.9** PP

    dCache_3 120 rvvaPvlaegeqvvGavvfgvsLnndllrelke 152
                 rv  Pv+++  q++G+v +g s n d+++++++
  EHT98258.1 147 RVFTPVFNARHQQIGVVAIGISVN-DVAAQVTK 178
                 ************************.9*999876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3
    dCache_3 132 vvGavvfgvsLnndl 146
                 ++G+++++++L ++l
  EHT98258.1 195 MLGIFILVKRLKHIL 209
                 799******999875 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.7e-05     0.022       6      63 ..     438     498 ..     433     522 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
  HATPase_c_3   6 AlaelvdNsldAdaen....vkievnknrgktgeivieDdGkGmseeelknalrlatsskea 63 
                  +l  l++N+l+A        +++ ++ ++    ++ + DdG G++ ++l   ++ + s+k +
   EHT98258.1 438 VLGNLIENALEALDPDmdgeIHVMLHYQN-GWLSCEVSDDGPGIPADQLATIFERGVSTKGE 498
                  6778999*999865555556999999986.59******************999888777764 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00049      0.62       1      29 [.     228     256 ..     228     265 .. 0.93
   2 ?    0.5   0.0      0.51   6.6e+02      60     109 ..     273     326 ..     257     331 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00049
       PAS_7   1 lenmsqGisvfDadlrLvawNrrylelld 29 
                 l+++++G++ +D + r+ ++N+   +ll+
  EHT98258.1 228 LDSIKEGVIAVDDQSRVSLINQAASQLLK 256
                 799**********************9996 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.51
       PAS_7  60 eaeverrlaaaragkphsfererpdgrvievrgnpl....pdgGfVttytDiTe 109
                 ++++++  +a+++gk+ + e    +g+++  ++ p+       G V+t+ D Te
  EHT98258.1 273 AQMLTHLRDALHDGKAAYDEELNVRGKILISNTVPVrsrsSIIGAVSTFRDKTE 326
                 455566667777888888888889999999999888333334699999999887 PP

>> PAS_10  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.32       3     104 ..     226     323 ..     225     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      PAS_10   3 nlLnstpieltflDdnlqirrFtpaakklfklipadvGrpladihpkkavknveeviealrtgekdevevvvpkngkwvlvrylpyrdedgeiaGvvet 101
                  +L+s++ +++ +Dd+ ++   ++aa++l+k +  +   + + +  +++ + ++++ +al +g+  ++e + +++gk+ + ++ p+r    +i G+v t
  EHT98258.1 226 AILDSIKEGVIAVDDQSRVSLINQAASQLLKETTREAFLSGDRV--PENAQMLTHLRDALHDGKAAYDE-ELNVRGKILISNTVPVR-SRSSIIGAVST 320
                 68999999*********************998888764444444..899999************99998.7899*************.778999***** PP

      PAS_10 102 fvD 104
                 f D
  EHT98258.1 321 FRD 323
                 *98 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00036      0.46      17      60 ..     160     202 ..     149     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
     DUF2530  17 ivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGlaifl 60 
                 i v+++   v  v++ v+++++ +++++ l G++vG+lG+ i++
  EHT98258.1 160 IGVVAIGISVNDVAAQVTKSRW-NIFWTVLLGALVGMLGIFILV 202
                 5566666667777778786666.789*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3871.85
//
Query:       EHT98259.1  [L=318]
Description: hypothetical protein CKS_3017 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-84  281.1   0.0    6.6e-84  280.6   0.0    1.2  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
      0.015   15.1   1.0      0.065   13.0   0.2    2.2  2  LPD23           Large polyvalent protein associated domain 23
       0.58    9.9   3.6        1.2    9.0   3.6    1.4  1  Yae1_N          Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.6   0.0   1.1e-87   6.6e-84       2     202 ..      10     210 ..       9     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 280.6 bits;  conditional E-value: 1.1e-87
  Transposase_31   2 pHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYavai 96 
                     pHDa f+++ls+pe ardf+e hlp+el +++dl+tlklesgsf+e++lr+++sD+L+s+kt++ ++gyi+vliEh+sspdklmafrLlrYava+
      EHT98259.1  10 PHDATFRQFLSQPEIARDFMELHLPAELGAICDLNTLKLESGSFVEDDLRQYFSDVLYSLKTTRDEKGYIHVLIEHQSSPDKLMAFRLLRYAVAA 104
                     9********************************************************************************************** PP

  Transposase_31  97 merhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkklv 190
                     m+rhl+a++k+ lplvip++fY G+++ +p+s+++ld f dp la++ly   f+LvD+t++pd+ei  +r++a+l+l+qkhi+qrd+ael++ lv
      EHT98259.1 105 MQRHLEAGHKS-LPLVIPVLFYTGKRSpYPYSTRWLDAFSDPVLAARLYAEPFPLVDVTVIPDEEIAGHRSMAALTLLQKHIHQRDFAELMDTLV 198
                     ***********.*********************************************************************************** PP

  Transposase_31 191 elleelekteeq 202
                      +l +++ +++q
      EHT98259.1 199 PVLLAGYLSSSQ 210
                     ***999988776 PP

>> LPD23  Large polyvalent protein associated domain 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.13   7.6e+02      18      28 ..     248     258 ..     224     261 .. 0.85
   2 ?   13.0   0.2   1.1e-05     0.065      11      39 ..     281     309 ..     272     312 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.13
       LPD23  18 eAkeleaqGed 28 
                  A++le++G +
  EHT98259.1 248 IAQQLEQKGIE 258
                 69999999975 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.1e-05
       LPD23  11 adlealaeAkeleaqGedaesIrqeTGWf 39 
                    + l+ A+ + ++G d+e++ + TG  
  EHT98259.1 281 EREATLKIARTMLQNGLDNETVMKMTGLN 309
                 567789*********************75 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6   0.00019       1.2      15      38 ..     254     277 ..     250     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00019
      Yae1_N  15 qeGfdeGyqeGaqlGlelGqilGv 38 
                 q+G + G ++G+++G++lG+  G+
  EHT98259.1 254 QKGIEKGMEKGIEKGIQLGREAGR 277
                 666677777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2444.15
//
Query:       EHT98260.1  [L=549]
Description: malate:quinone oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.6e-232  771.6   0.1     3e-232  771.4   0.1    1.0  1  Mqo            Malate:quinone oxidoreductase (Mqo)
    2.5e-05   23.7   0.1    0.00023   20.5   0.1    2.1  1  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.079   12.1   0.0    2.1  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  771.4   0.1  5.1e-236    3e-232       2     489 .]      30     516 ..      29     516 .. 1.00

  Alignments for each domain:
  == domain 1  score: 771.4 bits;  conditional E-value: 5.1e-236
         Mqo   2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsalcElnYtpekedgsidiskAvkineqfevsrqfwaylvekgllk 100
                 k+dv+liG+Gimsa+lg+ll+el+p ++  ++e+ld va essn wnnaGtGHsa++ElnYtpe++dgsid++kA++ine+f +srqfw+++v++g+l+
  EHT98260.1  30 KTDVLLIGGGIMSASLGTLLEELQPGWKQIMVEKLDGVALESSNGWNNAGTGHSANMELNYTPERADGSIDVTKALEINEAFMISRQFWSSQVKDGVLN 128
                 79************************************************************************************************* PP

         Mqo 101 dpkefinkvpHlsfvageenveflkkRyealkksplfegmeysedkeelkewlPlvmegRdakekvaatrieeGtdvnfgaltrqllkalekkkgvelk 199
                 +p++fin++pH+sfv+g +nv++l kRy+al+k+ lf+gm++s+d++++++w+PlvmegRd+++kvaat++  Gtdvn+g++trql+ +l+k+++++l+
  EHT98260.1 129 NPRSFINSTPHMSFVWG-DNVDYLTKRYAALQKTVLFQGMQFSTDHKQIAQWAPLVMEGRDPQQKVAATWTPVGTDVNYGEITRQLIGSLKKHDNFRLE 226
                 ****************9.68******************************************************************************* PP

         Mqo 200 lkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqflvcknpevveqheakvYgkaavgaPPmsvpH 298
                 +++ev+d+kr++d++W+v++kd k+g +++v+ak+vfiGaGGgalklLqk+gipea++y+gfPv+G+flv+knp+++e+h akvYg+a+vgaPPmsvpH
  EHT98260.1 227 TSSEVTDFKRNSDNSWHVTIKDAKNGGERTVDAKYVFIGAGGGALKLLQKTGIPEADNYAGFPVGGSFLVTKNPQIAERHLAKVYGQASVGAPPMSVPH 325
                 *************************************************************************************************** PP

         Mqo 299 lDtRvidgkksllfGPfagfstkflkegslldllksvklsnllpllavglknldLvkYlieqvlkskedrlealreflpeakkedWelvvaGqRvqvik 397
                 lDtR+ dgk+++lfGPfa+fstkflk+gsl+dll+s +++n++p+ +vgl+n+dLvkYli+qv+ s++dr++alre++p+akkedW+l++aGqRvq+ik
  EHT98260.1 326 LDTRYFDGKRVVLFGPFATFSTKFLKNGSLFDLLSSTTTHNFMPMTHVGLDNFDLVKYLIGQVMLSDDDRFAALREYYPDAKKEDWTLIQAGQRVQIIK 424
                 *************************************************************************************************** PP

         Mqo 398 kdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlekcfkeklkseewkeklkelipsygkkleedaelleevrketakvLkl 489
                 kd+ekggvl++Gte+v+++++++aalLGasPGAsta++i+++v++k f+e++ks+ew+ek+++++p+yg+kl+++++l+++v++eta++L+l
  EHT98260.1 425 KDAEKGGVLKLGTEIVTDQQKTVAALLGASPGASTAAPIAINVMQKLFPEQFKSAEWQEKIRKIVPAYGQKLNDNPALTQQVWDETAATLQL 516
                 ******************************************************************************************97 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.9e-08   0.00023       1     174 [.      30     279 ..      30     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.9e-08
                    EEEEEEE--SHHHHHHHHHHHHT..THHEEEEESSSSSCCSS.....S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.......... CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLsea..Gvrvvlvekrsttvvlp.....radglnqrtmellrqlGledrilaegapnelmgealyne.......... 79 
                    +tdVl +G+G   ++l++lL e   G + ++vek +  + ++      a++ ++  mel  +   +d  ++ ++  e+++ ++  +          
     EHT98260.1  30 KTDVLLIGGGIMSASLGTLLEELqpGWKQIMVEKLDGVALESsngwnNAGTGHSANMELNYTPERADGSIDVTKALEINEAFMISRqfwssqvkdg 125
                    699*****************97555999******9988777767788999999999999988888888888887777777776666899999**** PP

                    ..................................................CCCC.........CEEEEEHHCHHCST-CEE--HHHHHHHHHHHHH CS
  FAD_binding_3  80 ..................................................lsdt.........pkaradlelesspervtvypqteleriLvehae 116
                                                                      +            ++++ ++   +  +  t+++  e++r L+ +++
     EHT98260.1 126 vlnnprsfinstphmsfvwgdnvdyltkryaalqktvlfqgmqfstdhkqI--AqwaplvmegRDPQQKVA-ATWTPVGTDVNYGEITRQLIGSLK 218
                    **************************9999999999998888777665551..044544433356666666.5555566899999*********** PP

                    HHT.EEETCSEEEECCEECCCC.CCCEEEECCTTEEEEEEEEEE.EE--GTT-HHHHHHTG CS
  FAD_binding_3 117 erg.lqvrfktevesleqdeeg.vtaevrdketgeeetvrakYl.vGaDGgrStvrktlgi 174
                    ++  ++++ + ev+ ++++ ++  + +++d ++g e+tv+akY+ +Ga Gg  +  ++ gi
     EHT98260.1 219 KHDnFRLETSSEVTDFKRNSDNsWHVTIKDAKNGGERTVDAKYVfIGAGGGALKLLQKTGI 279
                    ****************9987652689999**************989**9997776666665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.1     6e+02       3      35 ..      31      63 ..      21      80 .. 0.79
   2 ?   12.1   0.0   1.3e-05     0.079     288     339 ..     216     267 ..     204     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.1
  K_oxygenase  3 lDligiGiGpsnLsLailleevkkelkalfler 35
                  D+  iG G ++ sL  llee +   k + +e+
   EHT98260.1 31 TDVLLIGGGIMSASLGTLLEELQPGWKQIMVEK 63
                 688888888888888888888886666666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.3e-05
  K_oxygenase 288 kvkgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                  ++k+++++rl +++ev++ ++++++++++t+++ ++g e+t+++ +v++  G
   EHT98260.1 216 SLKKHDNFRLETSSEVTDFKRNSDNSWHVTIKDAKNGGERTVDAKYVFIGAG 267
                  5667889****************************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3774.95
//
Query:       EHT98261.1  [L=95]
Description: hypothetical protein CKS_3014 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-32  111.1   0.0    2.6e-32  110.8   0.0    1.1  1  VF530     DNA-binding protein VF530


Domain annotation for each model (and alignments):
>> VF530  DNA-binding protein VF530
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   1.4e-36   2.6e-32       1      63 []       6      68 ..       6      68 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.4e-36
                SS-TTSS--HHHHHHHHHHHT-HHHHHHHTTSSSTTSS--HHHHHHHHHHSHHHHHHHHHHHH CS
       VF530  1 knnpLhGvklekileeLveeygweeLaerinircFksnpsikSslkFLrktpWArekvEelYl 63
                +n+pLhG++le+ +++Lv++ygw+eL++rini+cFk++ps++SslkFLr+tpWAr+ vE+lYl
  EHT98261.1  6 SNDPLHGITLEMQVNSLVARYGWAELSKRININCFKNDPSVRSSLKFLRRTPWARAEVEALYL 68
                59************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 745.73
//
Query:       EHT98262.1  [L=488]
Description: L-2,4-diaminobutyrate decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-64  216.2   0.3      7e-64  215.9   0.3    1.1  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    6.3e-08   32.2   1.1    1.4e-07   31.1   1.1    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00011   21.3   1.5    0.00053   19.0   0.5    2.4  2  Aminotran_5      Aminotransferase class-V
     0.0088   14.8   0.1      0.017   13.8   0.1    1.6  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
  ------ inclusion threshold ------
      0.011   14.9   0.4      0.037   13.2   0.0    2.0  2  Aminotran_1_2    Aminotransferase class I and II
      0.026   13.3   0.0      0.053   12.2   0.0    1.5  2  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9   0.3   2.4e-67     7e-64      27     375 .]      67     417 ..      54     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 215.9 bits;  conditional E-value: 2.4e-67
                    HHCTGGGS--T...TSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHH CS
  Pyridoxal_deC  27 ekilapgvttw...hspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllal 119
                    e+ + ++++ +   h+p++ + l   + +is ++++L +a n+ + +w+++P  t++e+ +++wl+e +g      +    gv+++g++ s+l++l
     EHT98262.1  67 ERAIEYFLKDSlsvHHPQCVAHLHCPSLVISQAAEVLINATNQSMDSWDQAPSATLIEMKLIEWLREQVGYQ----AG-DAGVFTSGGTQSNLMGL 157
                    4555555554322277********9999******************************************99....32.469************** PP

                    HHHHHHHHHHHHHHTTTS.HHHHHCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT- CS
  Pyridoxal_deC 120 lAartkvikemkekgkelkeaeildklvlytsdqahssvekaalvlgvk...lrvipldengklrgaalekaieedkekGlipffvvatlGttvlg 212
                    + ar  ++ +  ++ ++   +  l+k  +++s++ah sv+k  ++lg++   + ++++de  ++ + +l +++ ++k++   ++ +vat+Gtt  g
     EHT98262.1 158 MLARDAFFARQGHSVQQDGLTGDLKKIKVFCSENAHFSVQKNMALLGLGyqsVTLVKCDEFARMDMTDLAQKLAQAKANNEQVLAIVATAGTTDAG 253
                    *******998655554434444567999************999999999888999*****999********************************* PP

                    BB--HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TT..TTTSEE CS
  Pyridoxal_deC 213 aFddlkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehed..sdvaad 306
                    a d l+e+  + ++ ++w+HvDAA++G+++++ ++rh l g+e++dS+t+  hK    ++ c+a+++k+  + +  ++ +a YL+ e    +  ++
     EHT98262.1 254 AIDPLREIVRLAAEQHIWVHVDAAWGGALLLSEKYRHYLDGLELVDSVTLDFHKQFFQTISCGAFLLKEARHYE-LMRYQAAYLNSEFdeAQGVPN 348
                    *********************************************************************98865.56799****965455455689 PP

                    CCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEEES CS
  Pyridoxal_deC 307 lgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFrlk 375
                    l  k +++ rr+++lklw+ l alG + + + i++ v la+++++ i+++   e+v++++l+ V Fr++
     EHT98262.1 349 LVSKSLQTTRRFDALKLWMGLEALGQKQYAEIIDHGVTLAQQVAQFIEQQDALELVMKPQLASVLFRYR 417
                    999****************************************************************95 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   1.1   4.8e-11   1.4e-07      40     242 ..     130     365 ..     123     415 .. 0.63

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.8e-11
                      HHHHHTT-S...EEEEES-HHHHHHHHH.....HHH--TTEEEEEETT.............-HHHHSSTTHHHHC.C--EEEE.E-EBTTTBE- CS
  Beta_elim_lyase  40 avaelfgke...aalfvpqGtaAnsill.....killqrgeevivtep.............ahihfdetgaiael.agvklrd.lknkeaGkmd 110
                       ++e +g++   a++f+  Gt++n + l     + ++++g++v  ++               + hf  ++++a l  g + ++ +k +e   md
       EHT98262.1 130 WLREQVGYQagdAGVFTSGGTQSNLMGLmlardAFFARQGHSV-QQDGltgdlkkikvfcsENAHFSVQKNMALLgLGYQSVTlVKCDEFARMD 222
                      5666666653336899999999999988666643333444433.22225777777788877777777777777776455555505566669*** PP

                      HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH...TTSSEEEEESSSTT- CS
  Beta_elim_lyase 111 lekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf...syvDsvtmslkKdll 201
                      + +l++++++ +a  ++ +++ +  T  t    +  ++ lre+  +a ++ i +h+D+A  +  a  l+e+ + ++   + vDsvt+ + K  +
       EHT98262.1 223 MTDLAQKLAQAKA--NNEQVLAIVATAGT--TDAGAIDPLREIVRLAAEQHIWVHVDAA--WGGALLLSEKYRHYLdglELVDSVTLDFHKQFF 310
                      **********888..44444444444443..35667899*******************9..66677999999999977788***********98 PP

                      -SS..-EEEEE-HH....HHHHHHHHHHHHT---S.STHHHHH................ CS
  Beta_elim_lyase 202 anv..Ggvlafrddeledylaerveqrkylggglr.qagvlaa...............l 242
                        +  G++l+ + ++   y +  + q+ yl ++++  +gv+                 l
       EHT98262.1 311 QTIscGAFLLKEARH---Y-ELMRYQAAYLNSEFDeAQGVPNLvskslqttrrfdalkL 365
                      766326777777774...4.444445555555555223444443444444444444332 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.5   1.8e-07   0.00053     114     177 ..     208     277 ..     126     280 .. 0.81
   2 ?   -2.9   0.0      0.81   2.4e+03     263     301 ..     367     405 ..     356     423 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-07
                  EEEEEEEBETTSCBEGGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5 114 akvkvipldeegeldldelekll......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaa 177
                    v+ ++ de  ++d+ +l+++l      ne++ ++  t+  +  G i+p+ ei++la +++++v+vDaa
   EHT98262.1 208 QSVTLVKCDEFARMDMTDLAQKLaqakanNEQVLAIVATAGTTDAGAIDPLREIVRLAAEQHIWVHVDAA 277
                  4689999***************9999976677777888999999*************************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.81
                  HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES CS
  Aminotran_5 263 aaleyleeigleaiekhekelaeyllerlkslpgvrlyg 301
                    le l + ++++i  h  +la+++ + +++ + ++l+ 
   EHT98262.1 367 MGLEALGQKQYAEIIDHGVTLAQQVAQFIEQQDALELVM 405
                  566777777788888888888888888888888887744 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   5.8e-06     0.017     154     215 ..     224     287 ..     206     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.8e-06
                 HHHHHHHHHSTTTGSESEEEE.ESS-TT.SEEE-HHHHHHHHTTSESEEEEE-TT-TTGGGSGG CS
    OKR_DC_1 154 etlkekikevpdakaprlavi.tnsTYd.GvlynakeivdkleklsdrilfDeAwvgyeqfipl 215
                   l++k+++   +++ +la++ t +T d G +  ++eiv ++ +  + +++D Aw+g   +++ 
  EHT98262.1 224 TDLAQKLAQAKANNEQVLAIVaTAGTTDaGAIDPLREIVRLAAEQHIWVHVDAAWGGALLLSEK 287
                 3344444443333335666652566554399999**********************98776654 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.54   1.6e+03     254     282 ..      23      52 ..      11      54 .. 0.85
   2 ?   13.2   0.0   1.3e-05     0.037      92     193 ..     182     281 ..      95     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.54
                    HHHHHHHHHHHHHHHHHHH.HHHHHHHHHH CS
  Aminotran_1_2 254 sllqaavaaalsdallkqs.eleemrqrlq 282
                    ++ +aav+++l+ ++++q   + e r+r++
     EHT98262.1  23 AQSSAAVVKWLEQPEMYQGkTVAELRERIK 52 
                    577899999999999998889999999987 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.3e-05
                    TT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTT.EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEE CS
  Aminotran_1_2  92 pgdeilvpdptyasyknilrlsggevvryplyseedf.hldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfv 186
                    ++ +++ ++  + s++++  l g+  +++ l + ++f ++d+ +l ++l++a+++n ++  i+ +      G++ +l e++ l   a ++++++ v
     EHT98262.1 182 KKIKVFCSENAHFSVQKNMALLGLGYQSVTLVKCDEFaRMDMTDLAQKLAQAKANNEQVLAIVATAGTTDAGAIDPLREIVRL---AAEQHIWVHV 274
                    455677788888889999999999988888888877648*****************966666666666666777676666666...********** PP

                    EETTTTC CS
  Aminotran_1_2 187 DeaYagf 193
                    D a +g 
     EHT98262.1 275 DAAWGGA 281
                    **98875 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05     0.053     110     225 ..     192     309 ..     180     335 .. 0.81
   2 ?   -3.3   0.0       0.9   2.7e+03     262     292 ..     366     396 ..     360     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
                 ETCHHHHHHHCTT-EEEEE-EEECTTEEEEHHHHHHHHH..HCCTCCCEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCCC...CT-HHHHH CS
     SepSecS 110 dekSslkavelaGleialvekvlegDelitdvedveeii..ekkreevilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAYa...iqsekyie 203
                 ++ S  k + l Gl    v  v+  + ++ d+ d  +++   k ++e +la+++t  +      D+++ei ++ ae  +   v +A++   + seky++
  EHT98262.1 192 AHFSVQKNMALLGLGYQSVTLVKCDEFARMDMTDLAQKLaqAKANNEQVLAIVATAGTTDAGAIDPLREIVRLAAEQHIWVHVDAAWGgalLLSEKYRH 290
                 5569999****************999*******998888656778999********999999************************9855555777777 PP

                 HHHHHHHHTTC-EECCCHCHCC CS
     SepSecS 204 klkkalkvGRvdvvvksldknl 225
                  l+ +l+   vd v  +  k++
  EHT98262.1 291 YLD-GLEL--VDSVTLDFHKQF 309
                 664.4444..555555555555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.9
                 CCCHHHCCHHHCCHHHHHHHHHHHHHHHHHH CS
     SepSecS 262 lisllllGskaykkllkeqkesfkllreklk 292
                  + l++lG+k+y +++ +     +++ + ++
  EHT98262.1 366 WMGLEALGQKQYAEIIDHGVTLAQQVAQFIE 396
                 5679999***999999887777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3649.68
//
Query:       EHT98263.1  [L=461]
Description: diaminobutyrate--2-oxoglutarate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.2e-101  338.9   0.0   3.9e-101  338.7   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
      0.002   17.4   0.0      0.012   14.8   0.0    1.8  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.7   0.0  4.3e-105  3.9e-101       8     406 .]      40     453 ..      33     453 .. 0.93

  Alignments for each domain:
  == domain 1  score: 338.7 bits;  conditional E-value: 4.3e-105
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S...EEEEESSHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld...kvflansGseAvet 102
                  +l+l+i ka+Gv++tdv++k+ylD +++   ++lGh+hP+v++ +++++ +   +    lt+    +++e+ll+l+p++       f+  sG++Ave+
   EHT98263.1  40 KLPLAIAKANGVWITDVENKQYLDCLAGAGTLALGHNHPDVLQSIQNVITSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKeycLQFTGPSGADAVEA 137
                  45699**********************************************9888877888888999**********9766675678889******** PP

                  HHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH...HHHHHHHHHHHHHH...CHTCCCEE CS
  Aminotran_3 103 AlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene...eeeaalleeleale...kkkkdeva 194
                  AlKla+k      +t ++ +i+f+g++HG t+galsvtg+    k+ +  ++pev +++yp  ++++         +al+ ++e+l+   +    + a
   EHT98263.1 138 ALKLAKK------HTGRSGVISFSGGYHGMTHGALSVTGN-LSPKEAVDGMMPEVQFMPYPHLYRCPLGIggeAGVKALTYYFENLIndvESGVRKPA 228
                  *******......***************************.999**********************98764446677888999**997666666777* PP

                  EEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTT CS
  Aminotran_3 195 AvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfg 292
                  Avi+E++qgegGv++a++e+l+++r+++++h++lli DEvq Gf+rTGk+fA ehag++pD+++++Ka++gGlpl++ l+ ++  +a++pg+h +Tf 
   EHT98263.1 229 AVILEAVQGEGGVNPAPAEWLQRIRKVTQEHGILLILDEVQAGFARTGKFFAFEHAGIEPDIIVMSKAVGGGLPLAV-LGIKKQFDAWSPGHHTGTFR 325
                  ***************************************************************************75.66667789************ PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EEET CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlilsaG 378
                  Gn la+a  l +l++++e++ ++ ++e+g+ lk +L elqk+y  i++vRg+Glmi+ie+++++e+++            + + kk  e+G+++   G
   EHT98263.1 326 GNQLAMATGLTTLKLLKENNIADSVAEKGEWLKGKLAELQKRYPAIGNVRGLGLMIGIEMVKPNEAQDhmgcypadgdlsALVQKKCFENGLILERGG 423
                  *****************************************************************999**********9766778999******9999 PP

                  T..TEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 379 d..nvirllppliitdeeidelleilkkal 406
                  +  +v+rllp+l i+ +e++ +l+++++al
   EHT98263.1 424 RhgSVLRLLPSLLINHDELQVFLDKFENAL 453
                  888***********************9986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.043   3.8e+02      74     110 ..     129     165 ..     102     176 .. 0.87
   2 !   14.8   0.0   1.3e-06     0.012     136     215 ..     214     291 ..     201     302 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.043
                    ESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHH CS
  Aminotran_1_2  74 gsGagaliealifllklnpgdeilvpdptyasyknil 110
                     sGa+a+ +al+ + k+   + +++++  y  +++++
     EHT98263.1 129 PSGADAVEAALKLAKKHTGRSGVISFSGGYHGMTHGA 165
                    5899999999999999999999999999998887765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.3e-06
                    HHHHTTHHCTTETEEEEEEESS-TTT--B--HHHH.HHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEE CS
  Aminotran_1_2 136 eealkeapegnkktkvilvesphNPtGtvatleel.eklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnlli 215
                    e+++++  +g  k+  +++e ++   G+ + ++e+ + + ++++++++ll++De+ agf+ + + + a  +a++e+   ++i
     EHT98263.1 214 ENLINDVESGVRKPAAVILEAVQGEGGVNPAPAEWlQRIRKVTQEHGILLILDEVQAGFARTGK-FFAFeHAGIEP---DII 291
                    45555555566688899999999999*9999988736799*********************965.33322444444...344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3385.98
//
Query:       EHT98264.1  [L=194]
Description: TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-12   46.3   0.2    1.9e-11   44.2   0.1    1.9  2  TetR_C_6     BetI-type transcriptional repressor, C-terminal
    5.5e-11   42.1   0.9    1.2e-10   41.0   0.1    2.0  3  TetR_N       Bacterial regulatory proteins, tetR family
    1.4e-05   25.1   0.0    2.4e-05   24.4   0.0    1.5  1  TetR_C_27    Tetracyclin repressor-like, C-terminal domain
    0.00058   19.9   0.0      0.003   17.6   0.0    2.1  2  TetR_C_7     AefR-like transcriptional repressor, C-terminal 
     0.0025   18.0   0.0     0.0081   16.4   0.0    1.9  2  TetR_C_24    Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.013   15.7   0.0       0.02   15.1   0.0    1.3  1  TetR_C_5     QacR-like protein, C-terminal region
      0.013   15.2   0.0      0.026   14.3   0.0    1.5  1  HTH_23       Homeodomain-like domain
      0.052   13.8   0.0        3.5    7.9   0.0    2.3  2  Phage_CII    Bacteriophage CII protein
      0.054   13.3   0.0       0.11   12.4   0.0    1.4  1  Phage_AlpA   Prophage CP4-57 regulatory protein (AlpA)
       0.11   12.6   0.0        0.2   11.8   0.0    1.5  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas


Domain annotation for each model (and alignments):
>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.76   1.4e+03      50      82 ..      55      81 ..      46      81 .. 0.72
   2 !   44.2   0.1   1.1e-14   1.9e-11       1     107 [.      83     184 ..      83     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.76
                HHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHH CS
    TetR_C_6 50 lrsnlrallaelaegglradadaeaaAerlaAl 82
                ++++   +l++ ++       +++++A++laAl
  EHT98264.1 55 WHTLTLTALERFMQ------GELDDFARELAAL 81
                66777777777777......6777888888876 PP

  == domain 2  score: 44.2 bits;  conditional E-value: 1.1e-14
                 HHHHHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHH CS
    TetR_C_6   1 prerlraileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalapeelda 99 
                 p+++l  ++e  +p+ +++   ++++ ++w++a +++++a l ++ +a++ ++l+++l++++++g ++ +d+++ A++l+A+++G +  + +     ++
  EHT98264.1  83 PEQQLYCLIEGHIPDAADS--GWQLYASVWQMAGHHDDYAGLAEKITAGWDALLCRILEAGVAQGYFRIEDVARSARQLNAMLNGYADLLSIKS---SP 176
                 6788888999999955555..4****************************************************************98888884...44 PP

                 HHHHHHHH CS
    TetR_C_6 100 eraralvr 107
                 er++++++
  EHT98264.1 177 ERVEQVMS 184
                 55554444 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   6.7e-14   1.2e-10       1      38 [.      16      53 ..      16      55 .. 0.98
   2 ?   -2.8   0.0       3.3   5.9e+03      25      31 ..     139     145 ..     138     148 .. 0.80
   3 ?   -2.9   0.0       3.4   6.1e+03      19      26 ..     149     156 ..     142     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.7e-14
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTS CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFp 38
                Il++A++lf e+G +++t+re+ + +G+s++++Y+yFp
  EHT98264.1 16 ILAGAVALFLEKGLEKATTRELTATLGISRSHIYHYFP 53
                9************************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
                 HHTSSHH CS
      TetR_N  25 rAGvskg 31 
                 +AGv++g
  EHT98264.1 139 EAGVAQG 145
                 7999987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.4
                 HHHHHHHH CS
      TetR_N  19 vreIAkrA 26 
                 ++++A++A
  EHT98264.1 149 IEDVARSA 156
                 68899887 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.3e-08   2.4e-05      45      91 ..     127     173 ..     104     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHHHHHHHCT-STT--HHHHHHHHHHHSGGGTSHHHHH CS
   TetR_C_27  45 ieeleeqlaeIireGvaaGeFkaadpeaaaravfdatarfhhPalaa 91 
                  +  +++l++I+++Gva+G+F+ +d+++ ar ++++++ + +   ++
  EHT98264.1 127 TAGWDALLCRILEAGVAQGYFRIEDVARSARQLNAMLNGYADLLSIK 173
                 5566889******************************9998877665 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.1     2e+03     101     115 ..      12      26 ..       3      27 .. 0.77
   2 !   17.6   0.0   1.7e-06     0.003      50      89 ..     132     171 ..     119     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHH CS
    TetR_C_7 101 eiervvesaVdmFla 115
                  +e++ + aV++Fl 
  EHT98264.1  12 LKEKILAGAVALFLE 26 
                 568889999999995 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHHHHTHHH CS
    TetR_C_7  50 ealaayLeaavaaGrLridDpelAAeqflgllkgelfwpr 89 
                 + l ++Lea va+G  ri+D+++ A+q+ ++l+g++    
  EHT98264.1 132 ALLCRILEAGVAQGYFRIEDVARSARQLNAMLNGYADLLS 171
                 568899***************************9987655 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5   4.6e+03      14      46 ..      36      68 ..      31      78 .. 0.68
   2 !   16.4   0.0   4.5e-06    0.0081       2      87 ..      81     166 ..      80     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
                HHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHH CS
   TetR_C_24 14 ahveviaeereeaavllrelraLspehreeira 46
                ++++++  +r+++  ++ +++ L+  ++e++++
  EHT98264.1 36 ELTATLGISRSHIYHYFPDWHTLTLTALERFMQ 68
                555555566777777777777777777776665 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.5e-06
                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHCH CS
   TetR_C_24   2 gspaerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagefedldpklaalailgmlnwv 87 
                 ++p+++L  l++ h+   a++  +    + ++   +++++    +     ++ll +++e+Gva+g f+ +d++  a+ +  mln+ 
  EHT98264.1  81 LDPEQQLYCLIEGHIPDAADSGWQLYASVWQMAGHHDDYAGLAEKITAGWDALLCRILEAGVAQGYFRIEDVARSARQLNAMLNGY 166
                 578999999999999999999888888888888888888888889999999********************************975 PP

>> TetR_C_5  QacR-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.1e-05      0.02      72     106 ..     136     170 ..     101     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
    TetR_C_5  72 kileeGiqsGefrienvedvskivasllsGlvvli 106
                  ile+G+ +G frie+v  ++  ++++l+G + l+
  EHT98264.1 136 RILEAGVAQGYFRIEDVARSARQLNAMLNGYADLL 170
                 699***************************98875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.026      10      38 ..      20      52 ..      11      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
      HTH_23 10 illllae....GlsvreIAreLgvsrrTvyrwl 38
                ++ l++e    ++++re  + Lg+sr+++y++ 
  EHT98264.1 20 AVALFLEkgleKATTRELTATLGISRSHIYHYF 52
                566666566779******************986 PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.002       3.5      21      51 ..      29      59 ..       2      85 .. 0.75
   2 ?    3.8   0.0     0.038        68      52      78 ..     132     163 ..     126     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
                HHHHHHHHHHHHHTSSTTTHHHHHHHHHHHH CS
   Phage_CII 21 iailgqrkvaeaiGvdeskisrwktDwipka 51
                +   ++r++   +G+ +s+i  +  Dw    
  EHT98264.1 29 LEKATTRELTATLGISRSHIYHYFPDWHTLT 59
                556799*********************8643 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.038
                 HHHHHHTTTTHHHH.....HHHHHHHHHHHHH CS
   Phage_CII  52 svLlavlefGvadd.....elarlakkvadlL 78 
                 ++L+ +le Gva+      ++ar a++  ++L
  EHT98264.1 132 ALLCRILEAGVAQGyfrieDVARSARQLNAML 163
                 589********997776669999999988877 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.9e-05      0.11       7      24 ..      35      52 ..      33      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.9e-05
  Phage_AlpA  7 reVeqktglsrstiYrli 24
                re+ +++g+srs+iY + 
  EHT98264.1 35 RELTATLGISRSHIYHYF 52
                78999**********985 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011       0.2      15      47 ..      20      52 ..       6      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHH--S-HHHHHHHHTS-HHHHHHHH CS
  HTH_Tnp_1_2 15 aaellvendyekltldeiaeevgvsrsTlykWk 47
                 a+ l  e+ +ek t++e+++ +g+srs +y++ 
   EHT98264.1 20 AVALFLEKGLEKATTRELTATLGISRSHIYHYF 52
                 677889***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1303.91
//
Query:       EHT98265.1  [L=167]
Description: putative dehydrogenase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-41  140.9   0.6      4e-41  140.8   0.6    1.0  1  FAD-SLDH  Membrane bound FAD containing D-sorbitol dehydrogen


Domain annotation for each model (and alignments):
>> FAD-SLDH  Membrane bound FAD containing D-sorbitol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.6   2.2e-45     4e-41       2     161 .]       5     167 .]       4     167 .] 0.97

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 2.2e-45
    FAD-SLDH   2 sRRrlLkgaalllaaaalasll...aaaaaaaaassaelaqFlqvSqlLtgrkkLdpalgarlyaalvaedaefkaqlaaLaallekqkakdveallaa 97 
                 sRRr+Lk+++l+++a+a+ +l+     +aa+ + ++++l+ F+qvSq Lt++++L+ ++g +l++a+++++++f+a+l  L++ll++q+   ++a l+ 
  EHT98265.1   5 SRRRVLKMVGLVAVASATGHLFplaPLNAAQPNMQADALDVFMQVSQQLTQQNELNDTVGSALFDAFSQTQKNFSAALFHLSNLLTHQPDLLQQARLQF 103
                 8*******************999998899999999**************************************************99998888888888 PP

    FAD-SLDH  98 aaadaalkdlalkIisaWYlGvvgkgddakvvaYeeaLmyeptkdvlviptYarggpnyWtaqP 161
                 a ++aa + la +I+s WY+G+vgkg++a++++Y ++L++++++d+lv+p++++g +++W+ qP
  EHT98265.1 104 AETEAASARLAGAILSSWYTGIVGKGKNARYITYINTLANRVVNDKLVPPSFSYGVCGSWASQP 167
                 999***********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1287.66
//
Query:       EHT98266.1  [L=708]
Description: glucose-methanol-choline oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-17   62.2   0.2    1.2e-10   41.6   0.0    3.6  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
      2e-14   54.5   1.5      7e-07   30.3   0.1    3.8  3  Cytochrom_C      Cytochrome c
    2.8e-10   40.0   0.0    3.8e-06   26.5   0.0    2.2  2  GMC_oxred_N      GMC oxidoreductase
    6.8e-08   32.5   3.6    3.3e-05   23.7   0.4    3.0  4  DAO              FAD dependent oxidoreductase
    4.9e-06   25.9   3.2    0.00014   21.1   0.9    2.4  2  FAD_binding_2    FAD binding domain
    8.4e-05   21.8   0.3    0.00014   21.1   0.3    1.3  1  Lycopene_cycl    Lycopene cyclase protein
    9.1e-05   22.6   0.2    0.00032   20.9   0.2    2.0  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0001   22.8   0.4      0.026   15.1   0.2    2.5  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    0.00054   19.3   0.2     0.0029   16.9   0.0    1.9  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    0.00076   18.3   2.1    0.00076   18.3   0.5    1.7  2  HI0933_like      HI0933-like protein
     0.0024   17.2   0.3     0.0024   17.2   0.3    1.6  2  FAD_binding_3    FAD binding domain
     0.0037   17.9   0.0        1.3    9.6   0.0    2.6  2  CCP_MauG         Di-haem cytochrome c peroxidase
     0.0042   16.5   1.7      0.029   13.7   1.1    2.0  2  FAD_oxidored     FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.024   14.3   0.1      0.049   13.3   0.1    1.5  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.037   13.7   0.2       0.17   11.6   0.0    2.3  2  Cytochrom_C550   Cytochrome c-550 domain
       0.05   12.7   0.1      0.073   12.1   0.1    1.2  1  GIDA             Glucose inhibited division protein A
      0.082   12.3   0.2       0.78    9.1   0.0    2.1  2  CytoC_RC         Photosynthetic reaction centre cytochrome C 
      0.093   12.7   0.1         22    5.2   0.0    2.3  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
       0.12   12.2   1.4        7.5    6.4   0.1    2.4  2  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
       0.14   12.7   0.0       0.37   11.4   0.0    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.16   11.8   0.0       0.31   10.8   0.0    1.4  1  DUF3836          Family of unknown function (DUF3836)
       0.16   12.7   5.1        1.2    9.9   0.2    3.0  2  GSu_C4xC__C2xCH  Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C
       0.24   11.2   0.1       0.45   10.4   0.1    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.079        61      38      66 ..     347     384 ..     329     385 .. 0.73
   2 !   12.5   0.0   0.00018      0.14       3      67 .]     434     537 ..     432     537 .. 0.63
   3 !   41.6   0.0   1.5e-13   1.2e-10       2      67 .]     575     653 ..     574     653 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.079
  Cytochrome_CBB3  38 vdiiknGkg........aMpafgg.qlsdeelwalvaY 66 
                       d++++G++        aMp  +  +++d ++ al+aY
       EHT98266.1 347 ADALRKGIRadgshlypAMPYTAYaRINDSDISALYAY 384
                      555555542222333349**99988************9 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00018
  Cytochrome_CBB3   3 aaaGaalykk..nCasCHg......kggag.....................psla.grdwepdalvd.....iiknGk...gaMp.afgg...q 54 
                        +Ga+l +   +C++CH+      +                         ++l  ++ w+ + l +     ++ nG    g M  a+ +   +
       EHT98266.1 434 WNRGAYLVEGltHCSTCHTprnflmA---EesdkslqgaslgtwyapaitsAALQsDDQWSRESLAAylasgHADNGAtaaGPMLeAIDKsfsR 524
                      578888888788*******5444331...14454555666778888655555555444788777776444466666663223344455556789 PP

  Cytochrome_CBB3  55 lsdeelwalvaYl 67 
                      +++++++a+++Yl
       EHT98266.1 525 MTPDDRAAIATYL 537
                      9**********97 PP

  == domain 3  score: 41.6 bits;  conditional E-value: 1.5e-13
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag....pslagr.dwep...dalvdiiknGk.....gaMpafggqlsdeelwalvaYl 67 
                      ++++G+++y++nCasCH  +g+g    p+l+++  +e+   d +  +i +G+     ++M +f+++l+d +++++ +Y+
       EHT98266.1 575 DMTDGEQIYRNNCASCHNLEGQGlnglPALTKHpVLEKpnaDNVAMVILDGVwpakgQGMLSFAKTLNDTQIADVTNYV 653
                      689***************88888889*999988644424569*********77765459******************97 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.32   2.5e+02      67      89 ..     364     386 ..     340     388 .. 0.71
   2 !   17.8   0.0   7.3e-06    0.0057       4      88 ..     437     537 ..     435     539 .. 0.67
   3 !   30.3   0.1   8.9e-10     7e-07       3      90 ..     578     655 ..     576     656 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.32
                  GGGGGG.TT--HHHHHHHHHHHH CS
  Cytochrom_C  67 aemparkerlteqeiadlaaYLk 89 
                  a+ ++   r+++ +i +l+aY +
   EHT98266.1 364 AMPYTAYARINDSDISALYAYFM 386
                  333333368************98 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 7.3e-06
                  HHHHH.H.TTGGGTB-SSSBSSS.................--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.......TT--HHH CS
  Cytochrom_C   4 Gkelf.t.anCaaCHgvegggakqgg.............gptlsgaaerasaasigasvanpaavsaprddfekkkltaempark......erlteqe 80 
                  G+ l+   ++C +CH+++    ++ +             +p+++ aa + + ++ ++s a+  a+   +++ +        p+ +      +r+t+++
   EHT98266.1 437 GAYLVeGlTHCSTCHTPRNFLMAEESdkslqgaslgtwyAPAITSAALQSDDQWSRESLAAYLASGHADNGATA-----AGPMLEaidksfSRMTPDD 529
                  555664347******99998888777889999999888877777777777766666666666433333322222.....222222334456******* PP

                  HHHHHHHH CS
  Cytochrom_C  81 iadlaaYL 88 
                  +a++a YL
   EHT98266.1 530 RAAIATYL 537
                  *******9 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 8.9e-10
                  -HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHT CS
  Cytochrom_C   3 rGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLks 90 
                  +G++++ +nCa+CH +eg+g ++   p+l++    +  + ++      a+v + ++ ++k++    m  +++ l++ +iad+++Y+++
   EHT98266.1 578 DGEQIYRNNCASCHNLEGQGLNGL--PALTKHPVLEKPNADNV-----AMVILDGVWPAKGQ---GMLSFAKTLNDTQIADVTNYVMQ 655
                  79****99*************977..88877665444333333.....33333356666666...34445567*************97 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00018      0.14       2      41 ..       8      48 ..       7     103 .. 0.81
   2 !   26.5   0.0   4.9e-09   3.8e-06     203     296 .]     230     315 ..     219     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
  GMC_oxred_N  2 delveggGsagsvvAaRLsedpstsvlvleaggreknrl..i 41
                 d +v+g+G+ g+ +A+RL++ + +sv++le+g++ ++ +   
   EHT98266.1  8 DVVVIGAGVNGALLATRLAKAG-KSVILLESGPKVSRGElvE 48
                 789***************9876.69********988766442 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 4.9e-09
  GMC_oxred_N 203 lerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlpvGknLqdHpv 296
                   e  +++++t+a + ++  ++ ++r+v+ ++ d ++t  r +v a+  v+aa a+++P+lL+ S   +     ++g+    d  vG+nL+dHp+
   EHT98266.1 230 AEDSGVQVITEAVVYQL-EHDAQGRIVAANYYDWNKT--RHRVTAQTFVLAANAIETPKLLLMSTSERF----PQGIGNARDT-VGRNLCDHPA 315
                  45669999999999999.55689**************..7777779******************87333....3577666554.********95 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   4.2e-08   3.3e-05       1      34 [.       8      43 ..       8      46 .. 0.93
   2 ?   -3.8   0.0       9.5   7.4e+03      31      48 ..      97     113 ..      96     128 .. 0.72
   3 !    8.4   0.0    0.0019       1.4     152     202 ..     225     280 ..     214     300 .. 0.75
   4 ?   -3.3   0.0       6.8   5.3e+03     329     342 ..     498     511 ..     477     591 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.2e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags 34
                dvv+iG+G+ G+  A  La++g  V+lle+g+ +++
  EHT98266.1  8 DVVVIGAGVNGALLATRLAKAGksVILLESGPKVSR 43
                9********************99*******987765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9.5
                 STTSSGGGSSEEEEESSS CS
         DAO  31 iagsgaSgrnsgllhsgl 48 
                 i+g g+S++ +++l+  +
  EHT98266.1  97 IFG-GTSWHWAAQLWRFV 113
                 788.9****999997643 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0019
                 HHHH.HHHTT-EEEESECEEEEEEEE.TCEEEEE....EECTEEEEEEEEEEE--GG CS
         DAO 152 lara.aealGveilegtevtgleeed.gkvwgve....rttpgendaadavVnaaGa 202
                 la++ ae+ Gv++++++ v  le++  g+++       ++t++++ +a++ V+aa+a
  EHT98266.1 225 LAAQqAEDSGVQVITEAVVYQLEHDAqGRIVAANyydwNKTRHRV-TAQTFVLAANA 280
                 55555***********99999*77445555555599887776333.5699*****97 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 6.8
                 EEEEECTTTHHHHH CS
         DAO 329 ylatGhsghGltla 342
                 yla+Gh  +G t a
  EHT98266.1 498 YLASGHADNGATAA 511
                 55666666666554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.9   1.8e-07   0.00014       1      34 [.       8      41 ..       8      49 .. 0.94
   2 ?    4.5   0.1      0.02        15     148     204 ..     227     283 ..     222     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.8e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqef 34
                   Dv+ViG+G+ G   A+++a+aG++v+++e ++++
     EHT98266.1  8 DVVVIGAGVNGALLATRLAKAGKSVILLESGPKV 41
                   9****************************99975 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
                    HHHHHTCTEEEEESEEEEEEEECTT.EEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 148 vesarkagvdfqerteadeLivedg.rvtGavvenpesgrevrirakavvlatgGfgr 204
                    +++a++ gv++ +++ + +L ++ + r++ a    + +++++r++a+  vla+ +++ 
     EHT98266.1 227 AQQAEDSGVQVITEAVVYQLEHDAQgRIVAANYY-DWNKTRHRVTAQTFVLAANAIET 283
                    68999999************99755588888888.6888889***********99987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   1.8e-07   0.00014       1      38 [.       8      43 ..       8      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.8e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllf 38
                   DvvviGaG  g +lA rl  ak+g +v+l+e++p++ +
     EHT98266.1  8 DVVVIGAGVNGALLATRL--AKAGKSVILLESGPKVSR 43
                   9*****************..**************9966 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   4.1e-07   0.00032       1      31 [.      11      41 ..      11      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.1e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   ++GaG+ G+++A +Lakag++v lle+++++
     EHT98266.1 11 VIGAGVNGALLATRLAKAGKSVILLESGPKV 41
                   8**************************9987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   3.4e-05     0.026       2      35 ..       9      42 ..       8      52 .. 0.92
   2 ?    5.2   0.0      0.04        31      47      72 ..     227     252 ..     220     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                vvv+G+G+ g  lA+ la+ gk+V ++e ++k+ 
  EHT98266.1  9 VVVIGAGVNGALLATRLAKAGKSVILLESGPKVS 42
                8****************************99987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.04
                 HHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  47 qeklekngievllntkveeiegsedg 72 
                 +++ e+ g++v+++++v ++e++++g
  EHT98266.1 227 AQQAEDSGVQVITEAVVYQLEHDAQG 252
                 5688999**************99998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.8e-06    0.0029     140     178 ..       4      42 ..       1      56 [. 0.79
   2 ?   -0.1   0.0      0.57   4.4e+02     189     215 ..     226     256 ..     220     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.8e-06
                  S-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 140 llpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  ++ +++vv+G+G+ G  lA  lak+gk v l+e ++++ 
   EHT98266.1   4 NNSADVVVIGAGVNGALLATRLAKAGKSVILLESGPKVS 42 
                  455789999999999999999999999999999999887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.57
                  HHHHHHHTTEEEEESCEEEEEEETTE....E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgnge....k 215
                  ++++ e++Gv+v ++++v +++ + +     
   EHT98266.1 226 AAQQAEDSGVQVITEAVVYQLEHDAQgrivA 256
                  56788999**********9999988864432 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.5   9.7e-07   0.00076       2      37 ..       8      43 ..       7      46 .. 0.95
   2 ?   -1.5   0.0         1   7.9e+02     117     165 ..     228     281 ..     225     286 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.7e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 dv+viG+G  G + A ++ak+gk+V+lle+++k+ r
   EHT98266.1  8 DVVVIGAGVNGALLATRLAKAGKSVILLESGPKVSR 43
                 8******************************99876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE......TTEEEEESEEEE----S CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktk.....seeeleadklvlAtGGl 165
                  ++++++gv++ +e  v ++e++++g++  +       ++++++a++ vlA    
   EHT98266.1 228 QQAEDSGVQVITEAVVYQLEHDAQGRIVAANYydwnkTRHRVTAQTFVLAANAI 281
                  678999*************99999976554312344477788888888886555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3     3e-06    0.0024       2      32 ..       7      37 ..       6      52 .. 0.92
   2 ?   -2.7   0.2       3.4   2.7e+03     113     156 ..     228     272 ..     225     279 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+++GaG  G++la+ L++aG +v+l+e 
     EHT98266.1  7 ADVVVIGAGVNGALLATRLAKAGKSVILLES 37
                   69***************************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
                    HHHHHHTEEETCSEEEECCEECCCC..CCCEEEECCTTEEEEEEEE CS
  FAD_binding_3 113 ehaeerglqvrfktevesleqdeeg..vtaevrdketgeeetvrak 156
                    ++ae  g+qv  ++ v  le+d +g  v+a+++d ++ ++ +v+a+
     EHT98266.1 228 QQAEDSGVQVITEAVVYQLEHDAQGriVAANYYDWNKTRH-RVTAQ 272
                    6789999999999999999999888668888888865555.88876 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0017       1.3      21      87 ..     444     519 ..     427     548 .. 0.72
   2 ?    5.4   0.0     0.034        27      22      38 ..     585     601 ..     579     659 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0017
                 S--HHHHSGCCCTTS-SSS.SBBEGGGEBSSS----STTGGGSS..........SBSTTEEBSSHHHHHHHHHHHTTT CS
    CCP_MauG  21 kisCasCHdpaagftdglk.vslgvegrlgarnaptllnaafnk..........glfwdgraesleeqalgPllnpve 87 
                  + C++CH+p++    +++  sl  + +lg+  ap+++ aa+++          +++  g a++ ++ a gP+l+  +
  EHT98266.1 444 LTHCSTCHTPRNFLMAEESdKSLQ-GASLGTWYAPAITSAALQSddqwsreslaAYLASGHADNGATAA-GPMLEAID 519
                 578*******88776655535555.45899999999999999886666666665555555555555444.77776555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.034
                 --HHHHSGCCCTTS-SS CS
    CCP_MauG  22 isCasCHdpaagftdgl 38 
                  +CasCH+++ ++ +gl
  EHT98266.1 585 NNCASCHNLEGQGLNGL 601
                 68*****9887765554 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.1   3.8e-05     0.029       1      32 [.       8      39 ..       8      41 .. 0.95
   2 ?    0.9   0.0      0.28   2.2e+02      94     140 ..     227     275 ..     185     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  DvvV+G+g+ G   A   a+aG++v+L+e  +
    EHT98266.1  8 DVVVIGAGVNGALLATRLAKAGKSVILLESGP 39
                  9****************************876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.28
  FAD_oxidored  94 eemlaeagvtvllntrlveveke.gkriesvtveskeg.rktirAkvfi 140
                    +  +++gv+v++++++ + e + ++ri + +  + ++ r++++A+ f+
    EHT98266.1 227 AQQAEDSGVQVITEAVVYQLEHDaQGRIVAANYYDWNKtRHRVTAQTFV 275
                   55567899*********9999975568999999998855*******998 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.3e-05     0.049       1      31 [.       9      39 ..       9      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr 31
                ++++GaG  G lla +Lakag  v+l+  ++
  EHT98266.1  9 VVVIGAGVNGALLATRLAKAGKSVILLESGP 39
                689**********************997665 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.1   7.1e+03     103     122 ..     521     540 ..     513     545 .. 0.81
   2 ?   11.6   0.0   0.00022      0.17      23      73 ..     573     622 ..     550     664 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.1
                     GGTTS-HHHHHHHHHHHHHH CS
  Cytochrom_C550 103 elrnltdedlkaiagyilva 122
                     ++  +t +d +aia+y+l a
      EHT98266.1 521 SFSRMTPDDRAAIATYLLPA 540
                     46778999999*****9966 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00022
                     HHHHHHHHHHHHHHTHHHHG.GGSBTTSTTSCSSHHHHHTSSS--SSHHHHH CS
  Cytochrom_C550  23 eeqlkkgkklFeaeCaqCHv.gGktktnpnvsLsledLalAtPpRdnvaalv 73 
                      +++++g+++++++Ca+CH  +G+  +     L  +   l +P+ dnva ++
      EHT98266.1 573 LSDMTDGEQIYRNNCASCHNlEGQGLNG-LPALTKHP-VLEKPNADNVAMVI 622
                     5799***************625665543.33443332.23357777776665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.3e-05     0.073       1      28 [.       8      35 ..       8      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv+ViG+G  G   A  +a++G +v+L+
  EHT98266.1  8 DVVVIGAGVNGALLATRLAKAGKSVILL 35
                79*************************9 PP

>> CytoC_RC  Photosynthetic reaction centre cytochrome C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.31   2.4e+02     226     252 ..     446     472 ..     430     485 .. 0.78
   2 ?    9.1   0.0     0.001      0.78     282     310 ..     582     610 ..     563     611 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.31
    CytoC_RC 226 nCtfChnsrafadwdqstpqratalyg 252
                  C +Ch  r+f   ++s    + a +g
  EHT98266.1 446 HCSTCHTPRNFLMAEESDKSLQGASLG 472
                 689999999998888887776666665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.001
    CytoC_RC 282 apkvaCatChqgaqkPleGanvikdyPeL 310
                 +++ +Ca Ch+ + + l+G+  ++++P L
  EHT98266.1 582 IYRNNCASCHNLEGQGLNGLPALTKHPVL 610
                 6889***********************98 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.028        22      14      58 ..     445     455 ..     425     472 .. 0.63
   2 ?    5.0   0.0      0.03        24      47      55 ..     584     592 ..     561     608 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.028
  Cytochrome_C7  14 ykCtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdgkn 58 
                    ++                                  C +CH+ +n
     EHT98266.1 445 TH----------------------------------CSTCHTPRN 455
                    23..................................666666555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.03
  Cytochrome_C7  47 sltCgaCHd 55 
                      +C++CH+
     EHT98266.1 584 RNNCASCHN 592
                    233444444 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.044        34       8      15 ..     446     453 ..     440     461 .. 0.80
   2 ?    6.4   0.1    0.0096       7.5       7      18 ..     585     596 ..     580     610 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.044
  Paired_CXXCH_1   8 eClsCHnp 15 
                      C++CH p
      EHT98266.1 446 HCSTCHTP 453
                     48999987 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0096
  Paired_CXXCH_1   7 geClsCHnphgs 18 
                     ++C sCHn  g 
      EHT98266.1 585 NNCASCHNLEGQ 596
                     56*****98886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00047      0.37       2      47 ..       9      51 ..       8      60 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00047
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg 47
                   + +iGaG  g+ la +l++ag   +++++  s  + ++ el e++ 
     EHT98266.1  9 VVVIGAGVNGALLATRLAKAG---KSVILLESGPKVSRGELVERFR 51
                   679******************...9999776655556666666665 PP

>> DUF3836  Family of unknown function (DUF3836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0004      0.31      54      86 ..     236     268 ..     223     279 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
                 TEEEEEEEEEEEEETTTTEEEEEEEEEETTTTE CS
     DUF3836  54 klLtnklkYeYkyddqgrviekealkWneskek 86 
                 +++t+ + Y+ ++d+qgr+++ + + Wn+++++
  EHT98266.1 236 QVITEAVVYQLEHDAQGRIVAANYYDWNKTRHR 268
                 56889999*********************9876 PP

>> GSu_C4xC__C2xCH  Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0016       1.2      15      36 .]     425     451 ..     419     451 .. 0.74
   2 ?    4.0   0.2      0.12        92      29      36 .]     584     591 ..     575     591 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0016
  GSu_C4xC__C2xCH  15 sptaattg.Wtstat....gaaCgsCH 36 
                      +p+ +++  W+ +a+     ++C++CH
       EHT98266.1 425 TPDPSQSAeWNRGAYlvegLTHCSTCH 451
                      444333337**********888***** PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
  GSu_C4xC__C2xCH  29 gaaCgsCH 36 
                       ++C+sCH
       EHT98266.1 584 RNNCASCH 591
                      578***** PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00058      0.45       2      33 ..       9      40 ..       8      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00058
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdisee 33
                v viGaG+ Ga +a+ +a+ag +V l++  ++
  EHT98266.1  9 VVVIGAGVNGALLATRLAKAGKSVILLESGPK 40
                89************************987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5156.09
//
Query:       EHT98267.1  [L=514]
Description: hypothetical protein CKS_3004 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-48  162.8   0.0    1.1e-47  161.7   0.0    1.6  1  GGDEF     Diguanylate cyclase, GGDEF domain
    1.8e-17   63.9   0.5      7e-17   62.0   0.1    1.9  2  dCache_1  Cache domain
  ------ inclusion threshold ------
      0.059   13.6   5.8         10    6.4   0.7    3.3  3  DUF4381   Domain of unknown function (DUF4381)
      0.082   12.8   0.1       0.24   11.3   0.1    1.7  1  POTRA_2   POTRA domain, ShlB-type


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   2.5e-51   1.1e-47       1     160 [.     348     510 ..     348     511 .. 0.94

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 2.5e-51
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T.TSEEEEESSSEEEEEEECSSHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk.sdlvaRlggdeFaillpetsseeaae 98 
                 a+ D lTgL+NRr++++ l+++l +ar+++ +++++l d+d+Fk++ndtyGh +GDe+Lq+va++L++++++ +d++aR+gg+eFai+l +ts  +a +
  EHT98267.1 348 ANADGLTGLANRRYFDQFLKKSLLHARSSGGPVSLILFDIDYFKRYNDTYGHVSGDECLQQVAQILKTFAQRrTDIAARYGGEEFAIVLADTSARDALT 446
                 688***********************999****************************************9888************************** PP

                 HHHHHHHHHHCS-EEETTCC.EEE---EEEEEEEE...-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF  99 laerirrllaklkepvelsg.eelyvtisiGialap.peegedleellkeAdealyeaKkagrn 160
                 +a  + +++++ ++p+   g ++  vt+s+G+a+++  e  e++e+l+k+Ad+aly+ K++grn
  EHT98267.1 447 VALSVVETVRQWAIPHVSTGlTTGCVTLSAGVAATEaGEGPEHAESLIKRADDALYRTKHEGRN 510
                 ****************665515678**********94566799********************9 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.1   1.6e-20     7e-17       5     237 ..      49     270 ..      45     279 .. 0.78
   2 ?   -0.5   0.0       0.2   8.9e+02      35      68 ..     337     370 ..     325     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.6e-20
    dCache_1   5 eqaeeqllglaeqlanniedvldslenlaetlasnpslqdlleepnraneasreslqallksilksnpdisgvylvdadGqviassdpssppnlegtdd 103
                 +++ee + +l+   a + ed++ ++e +++ + + ++ q      ++    + +++++++++++++ p +++++++d++G++iass +++p++    ++
  EHT98267.1  49 RSTEERAIDLSVAQARQAEDTFLQIELSLREVQRVIQSQP-----GT--DIDVAEVNNIMRTLQSRLPQLEDMFYFDSQGRWIASSLTEMPKG----NN 136
                 5566677777777778888888888877777766544333.....33..345667777777777779***********************988....59 PP

    dCache_1 104 padrdwykealaggggkpvisdpyvdqtggkpvitiavpiyddsgkfiGvlaadldldnlqdllsniklgetgyvfivdsdGniiah...pdkdllgkn 199
                  adr+++     + +  ++++++ ++ ++g++vi ++  i dd g f+Gvl a +++d+++++++n+ +g+   + ++  d ++++    pd+ ++gkn
  EHT98267.1 137 NADREYFIFHQHNLRSSVHVGPALRSRSSGRYVIPVSLRINDDYGGFKGVLLATISIDYFRHYYDNFVIGPQDLLVLMLADSTVLYArplPDS-YIGKN 234
                 ******887766665678888888777789************99***************************99999999999***98544444.8**** PP

    dCache_1 200 lrdelkaqealekalakiesgvssvklngeeylvayap 237
                 l+++  +      a a++ sg+ + +l+ge++++ ++ 
  EHT98267.1 235 LSSSPLFH--QLLANAERGSGQWKAELDGEKRIFGFVS 270
                 ***99873..2222235556666666999999988764 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.2
    dCache_1  35 tlasnpslqdlleepnraneasreslqallksil 68 
                 + a n+sl++l+++++ + +a+r+ ++++lk+ l
  EHT98267.1 337 LTAANQSLKSLANADGLTGLANRRYFDQFLKKSL 370
                 3466777888777777778889999999998754 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.4    0.0069        31      24      85 ..      23      86 ..       9     112 .. 0.74
   2 ?    6.4   0.7    0.0023        10      23      78 ..     299     346 ..     290     376 .. 0.51
   3 ?    3.1   0.0     0.023     1e+02      60     108 ..     397     443 ..     387     455 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0069
     DUF4381 24 llaalllllllvlalwllrrrkrn..rreAlreLaalradeadakellaalselLkrvalayyp 85
                l+  ll l+++v+ +w l+  +++  r +  r+++   a++ +a++++ ++   L+ v +   +
  EHT98267.1 23 LACSLLTLGVIVVNAWTLHMDWQRtvRSTEERAIDLSVAQARQAEDTFLQIELSLREVQRVIQS 86
                4445555888888888888666555666666666666677789999999999999998776655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0023
     DUF4381  23 lllaalll.llllvlalwllrrrkrnrreAlreLaalradeadakellaalselLkr 78 
                 +ll ++ll  ++l++++ +   r+      + eL++lr       + l a+++ Lk 
  EHT98267.1 299 VLLSLVLLvGIILLWIFIRNEARRS--LRYQLELTHLR-------DELTAANQSLKS 346
                 3443444423333333333332222..22334455555.......223333333333 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.023
     DUF4381  60 adeadakellaalselLkrvalayypreevagltGeaWlafLdatlpak 108
                 +++ + +e l++++++Lk  a  +     +a+  Ge+++ +L+ t++++
  EHT98267.1 397 YGHVSGDECLQQVAQILKTFAQRRTD--IAARYGGEEFAIVLADTSARD 443
                 56778899***********9999777..788888899999988887765 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.2e-05      0.24      14      47 ..      75     108 ..      71     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.2e-05
                 SSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHH CS
     POTRA_2  14 lsleeleallqpylgkclgladlnqlakeltnay 47 
                 lsl+e+++++q   g ++++a++n++++ l+ ++
  EHT98267.1  75 LSLREVQRVIQSQPGTDIDVAEVNNIMRTLQSRL 108
                 8899**************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 3941.00
//
Query:       EHT98268.1  [L=246]
Description: oxygen-insensitive NADPH nitroreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-21   77.7   0.5    1.7e-20   73.8   0.5    2.2  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.02   14.5   0.3       0.25   10.9   0.3    2.7  3  TM1586_NiRdase  Putative TM nitroreductase
        0.1   13.1   0.1       0.21   12.1   0.1    1.4  1  Neprosin_AP     Neprosin activation peptide


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.5   2.9e-24   1.7e-20       5     170 .]      12     164 ..       9     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 2.9e-24
                     -B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE--- CS
  Nitroreductase   5 rSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivivat 99 
                     +S R F+d+pv+++ l++i+++a+raP++ n+q++ +vv +d ++r+ + ++a ++ + a+a+ +   +       +  ++++a a+v       
      EHT98268.1  12 KSERSFTDQPVDDAILDRIISTAYRAPTSVNSQQVSLVVTRDPAKRQTISQIAGGQPWIAKAPVFITVVL------DMHKSRMAMAAVGKEQ--- 97 
                     799***********************************************************99977773......4455555555444433... PP

                     TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase 100 ldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                           + + ++      d+g+a+  ++ aA+++Glg +pigg+ ++ + + +ll+lp+   +v+ +++Gy
      EHT98268.1  98 ----IAQQSIESIVSGSTDVGIALGSIMAAARSEGLGIVPIGGIRRDPDAMIELLNLPEYTFPVAGVVIGY 164
                     ....4578899999999*******************************9*********************9 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.015        90       7      28 ..       8      30 ..       3      33 .. 0.78
   2 ?   10.9   0.3   4.3e-05      0.25     160     186 ..      27      53 ..      12     124 .. 0.84
   3 ?    0.2   0.0     0.078   4.7e+02     201     215 .]     110     124 ..      76     197 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.015
                    HH--.B---B--S---HHHHHHH CS
  TM1586_NiRdase  7 ekRh.svRkYkdealeeelleel 28
                    ++Rh s R+++d+++++++l+++
      EHT98268.1  8 FTRHkSERSFTDQPVDDAILDRI 30
                    4444399***********99987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 4.3e-05
                     HHHHHHHHHTS--GGG----EEE.E-S CS
  TM1586_NiRdase 160 fkeileaarlAPsAlNqqpwrfelkdd 186
                     +++i+  a  AP+++N+q++ + +  d
      EHT98268.1  27 LDRIISTAYRAPTSVNSQQVSLVVTRD 53 
                     678999**************9996554 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.078
                     HHHHHHHHHHHHHHH CS
  TM1586_NiRdase 201 kiDlGIallHfelaa 215
                     ++D+GIal  ++ aa
      EHT98268.1 110 STDVGIALGSIMAAA 124
                     455555554444433 PP

>> Neprosin_AP  Neprosin activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.4e-05      0.21      16      64 ..     165     210 ..     161     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
  Neprosin_AP  16 kkqpafdHplLknhkiqekpselpekakeeskekkekeksvtqlWhqsg 64 
                   +qpaf+ p L  ++++++ s++ e  +++     + + +++q W+++g
   EHT98268.1 165 VDQPAFQKPRLPMQTFRHEESYHTEGLEQQI---AHYNAEMVQHWKDTG 210
                  57*****************999995544444...56778899****988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1916.05
//
Query:       EHT98269.1  [L=367]
Description: ATP-binding component of an ABC superfamily sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-33  115.4   0.0    4.1e-33  114.8   0.0    1.3  1  ABC_tran     ABC transporter
    4.2e-08   33.2   0.0    9.3e-08   32.1   0.0    1.6  1  TOBE_2       TOBE domain
    4.5e-07   30.0   0.1     0.0054   16.6   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    8.3e-05   23.0   0.3    0.00016   22.1   0.3    1.5  1  AAA_16       AAA ATPase domain
    0.00012   21.6   0.2     0.0043   16.5   0.2    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00015   21.8   0.0    0.00034   20.6   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
     0.0004   20.6   0.0      0.001   19.3   0.0    1.6  1  AAA_33       AAA domain
    0.00057   19.6   0.1     0.0038   16.9   0.0    2.2  2  AAA_29       P-loop containing region of AAA domain
     0.0026   18.5   0.2      0.011   16.5   0.1    2.3  1  OB_MalK      MalK OB fold domain
     0.0046   17.2   0.1     0.0082   16.4   0.1    1.5  1  AAA_22       AAA domain
     0.0069   16.3   0.0      0.014   15.3   0.0    1.5  1  Rad17        Rad17 P-loop domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.057   13.5   0.0    1.9  2  MMR_HSR1     50S ribosome-binding GTPase
      0.014   15.3   0.2      0.039   13.9   0.0    1.8  2  NACHT        NACHT domain
      0.028   14.9   0.0      0.058   13.8   0.0    1.5  1  AAA          ATPase family associated with various cellular a
      0.032   13.8   0.3       0.22   11.1   0.0    2.2  2  AAA_25       AAA domain
      0.032   14.1   0.0      0.054   13.4   0.0    1.2  1  ATPase_2     ATPase domain predominantly from Archaea
      0.041   13.6   0.1      0.092   12.4   0.1    1.7  2  AAA_30       AAA domain
      0.046   14.0   0.0       0.11   12.8   0.0    1.6  1  AAA_28       AAA domain
      0.047   13.7   0.0       0.13   12.3   0.0    1.7  1  AAA_5        AAA domain (dynein-related subfamily)
      0.052   12.7   0.0       0.09   12.0   0.0    1.3  1  NB-ARC       NB-ARC domain
        0.1   11.4   0.0       0.17   10.7   0.0    1.2  1  Adeno_IVa2   Adenovirus IVa2 protein
        0.1   13.1   0.1       0.19   12.2   0.1    1.4  1  AAA_23       AAA domain
       0.11   12.7   0.0        3.4    8.0   0.0    2.5  2  TOBE         TOBE domain
       0.17   11.9   0.0       0.35   10.9   0.0    1.5  1  AAA_14       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   5.4e-36   4.1e-33       1     136 [.      19     161 ..      19     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 5.4e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekals 90 
                 l+n+ ++ +eg+ va++G++G+GKStLl+++agl++ +eG++ +  +d+++  l+ +++++++++q   lfp+l+vren         e+++ ++  ls
  EHT98269.1  19 LDNICFEAEEGTFVALLGPSGCGKSTLLRTIAGLETADEGTVSFSHRDITH--LPPSERKLSMVFQSYALFPHLSVRENllfglkargEDRQTFAGRLS 115
                 799************************************************..********************************99877778888888 PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++     +t +++ p++LSgGq+qrval ra++ + +l l+DEp 
  EHT98269.1 116 RVSKLMELETLLDRLPAQLSGGQQQRVALGRAVIANNTLCLMDEPL 161
                 8888888899999999*****************************7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.2e-10   9.3e-08       1      76 []     271     343 ..     271     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.2e-10
      TOBE_2   1 laiRPEklrlaaaggan.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 l+iR E+++    ++   gl++ V++ ey+G++t++v++l g q v++++ ++   +++++G   +l+w+ d+  ++
  EHT98269.1 271 LGIRAEDIQFI--DPHSaGLTANVVNYEYMGADTLVVCQLTGSQAVLTVTVPGM--KRFNEGHLTGLQWPVDKQYLF 343
                 79********4..55444************************999988888887..4************99987766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.3e-06    0.0054       1      36 [.      31      58 ..      31      78 .. 0.73
   2 !   11.9   0.0   0.00019      0.14     222     298 ..     119     193 ..      58     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.3e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdel 36
                + +l Gp g+GKS+LL+++ +l         + de 
  EHT98269.1 31 FVALLGPSGCGKSTLLRTIAGL--------ETADEG 58
                679****************999........233333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00019
      AAA_21 222 vflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                  ++e +   ++ +++lS G+++  al  a+++ +   +l l DEp ++L+ kl  +  + +++l+r  g   + +TH+
  EHT98269.1 119 KLMELETLLDRLPAQLSGGQQQRVALGRAVIANN---TLCLMDEPLSNLDAKLRQSMRREIRALQRaLGLTMLYVTHD 193
                 3344445556667889***999999999999999...************************99999999999999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.3   2.2e-07   0.00016      23     107 ..      28     141 ..      16     203 .. 0.55

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.2e-07
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdql...esaipysa.laqalareellrqlldeaesaeleawrekleeala........... 106
                 ++  v l G+sG+GKs+l+r+++   ++d+g +   + d     +s++ +s+ + +++ + +l   ++     ++++++r+++ ++l+           
  EHT98269.1  28 EGTFVALLGPSGCGKSTLLRTIAGLETADEGTVSFSHRDIThlpPSERKLSMvFQSYALFPHLSVRENLLFGLKARGEDRQTFAGRLSrvsklmeletl 126
                 34789******************6555555666444444444665555555523333323233333333333334444444444444444444444444 PP

      AAA_16 107 ..............a 107
                                
  EHT98269.1 127 ldrlpaqlsggqqqR 141
                 444433333444440 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   5.7e-06    0.0043      25     208 ..      30     204 ..      20     213 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.7e-06
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTT.TTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakk.lrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                  f a++Gp G+GKs ll  i    G ++a +   s + +d+ h        ++ +++++f+      + +  e  +    k  ge + ++ g+  + ++
  EHT98269.1  30 TFVALLGPSGCGKSTLLRTI---AGLETADEgTVSFSHRDITH-----LPPSERKLSMVFQSYALFPHLSVRENLLFGL-KARGEDRQTFAGRLSRVSK 119
                 68899999999999999999...45554422022333334444.....4666667777776666654444444333333.3334445566666666666 PP

                 HHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSH.HHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxx RF
       SMC_N 123 vsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislre.emlekadkl 208
                 ++el    +  + +LSgG+++ val    A   +  + l+l+De  ++LD+k ++ + + +++ +      ++ +++++ e ++ ad++
  EHT98269.1 120 LMELETLLDRLPAQLSGGQQQRVALGR--A--VIANNTLCLMDEPLSNLDAKLRQSMRREIRALQRAlgLTMLYVTHDQtEAMSMADRI 204
                 66666666667899******9877653..3..3567789***********************888773344555555441334444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.5e-07   0.00034      86     132 ..      15      62 ..       3      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.5e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  +k++l+++  + ++  +++l+G+SG GKStL+ ++++ +++  g vs 
   EHT98269.1  15 EKTALDNICFEAEEgTFVALLGPSGCGKSTLLRTIAGLETADEGTVSF 62 
                  5567777777777768899*****************988888887775 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-06     0.001       2     100 ..      32     188 ..      31     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt....................................lrrrlfgtdqqskt............dytrvl 52 
                 v l G++G+GKstl++ ++     ++ ++ t                                    l++ l++++++++t            ++ ++l
  EHT98269.1  32 VALLGPSGCGKSTLLRTIAGL---ETADEGTvsfshrdithlppserklsmvfqsyalfphlsvrenLLFGLKARGEDRQTfagrlsrvsklmELETLL 127
                 5678**************844...444444433333446888888888888888888888888777744444444444444668888888777888899 PP

      AAA_33  53 drlyqilnelarkalsagrnvildat.........nls....rrerarflklarrlgvpvr 100
                 drl ++l++  +++ + gr+vi+ +t         nl+    ++ r+++++l r lg   +
  EHT98269.1 128 DRLPAQLSGGQQQRVALGRAVIANNTlclmdeplsNLDaklrQSMRREIRALQRALGLTML 188
                 **************************88888888855522214444666666666664443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.1e-06    0.0038       9      43 ..      13      50 ..       6      63 .. 0.75
   2 ?   -0.8   0.0       1.7   1.3e+03       5      28 ..     323     344 ..     313     349 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.1e-06
      AAA_29  9 Wgtfdg.htieidlkg..atlltGpsGsGKSTllDAiq 43
                Wg+ +    i ++ ++  ++ l GpsG GKSTll  i+
  EHT98269.1 13 WGEKTAlDNICFEAEEgtFVALLGPSGCGKSTLLRTIA 50
                666555566666655547899************96665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.7
      AAA_29   5 qlvNWgtfdghtieidlkgatllt 28 
                 + +N g ++g ++++d +  +l++
  EHT98269.1 323 KRFNEGHLTGLQWPVDKQ--YLFS 344
                 556788888877888733..5555 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.5e-05     0.011       1      53 []     235     278 ..     235     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-05
     OB_MalK   1 GSPaMNflpatveedgvlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 G P+MN+lp t +       +g   l  p++     ++  +  + lGiR E+i
  EHT98269.1 235 GAPPMNILPLTSV-------NGRHFLSQPTQP--VVSESSETALSLGIRAEDI 278
                 99*********99.......444555555555..5677799***********8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.1e-05    0.0082       4      30 ..      28      54 ..      25     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqld 30
                + +++++ G+sG+GK+tllr+++   +
  EHT98269.1 28 EGTFVALLGPSGCGKSTLLRTIAGLET 54
                67899***************9987764 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-05     0.014      32      66 ..      16      50 ..       1      61 [. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
       Rad17 32 kewlkadvLesrkkriLLisGPsGCgkstvvkvLs 66
                k++l+    e ++   + + GPsGCgkst ++ ++
  EHT98269.1 16 KTALDNICFEAEEGTFVALLGPSGCGKSTLLRTIA 50
                7889999999999999999***********99876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.7e-05     0.057       2      36 ..      32      67 ..      31      82 .. 0.78
   2 ?   -1.1   0.0       2.7     2e+03      59      83 ..     165     190 ..     132     218 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.7e-05
                EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdi 36
                va++G +  GKStL++++ g  +a  +   +  rdi
  EHT98269.1 32 VALLGPSGCGKSTLLRTIAGLeTADEGTVSFSHRDI 67
                89****************995366666666555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHHHHCT.SEEEEEE CS
    MMR_HSR1  59 gaseekglgkaflaleea.dlillvv 83 
                 +a+ +++++++++al++a  l +l v
  EHT98269.1 165 DAKLRQSMRREIRALQRAlGLTMLYV 190
                 45555566666666666423333333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.2e-05     0.039       3      21 ..      32      50 ..      30      65 .. 0.88
   2 ?   -1.7   0.0       3.2   2.4e+03      51      89 ..     176     210 ..     125     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.2e-05
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                v+l G++G+GK+tLl+ +a
  EHT98269.1 32 VALLGPSGCGKSTLLRTIA 50
                899**************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.2
                 ..-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE- CS
       NACHT  51 arsladllfsqlpepaapvsevwavllelperlLlilDg 89 
                 +r l++ l   ++    +++e     ++ ++r+ l+ Dg
  EHT98269.1 176 IRALQRALGLTMLYVTHDQTE----AMSMADRIILLNDG 210
                 345555555555555555555....66666666666666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.7e-05     0.058       2      52 ..      33      83 ..      32      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.7e-05
                EEESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake..lgvefleisgsellskyvgesekkirelfke 52
                 l Gp G+GK++l + +a    ++   +++s  +++  ++  se+k++++f++
  EHT98269.1 33 ALLGPSGCGKSTLLRTIAGLetADEGTVSFSHRDIT--HLPPSERKLSMVFQS 83
                699***************873345567777777777..777888888888875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.22      32      51 ..      28      47 ..      21      64 .. 0.89
   2 ?   -0.3   0.0      0.93     7e+02     166     188 ..     170     192 ..     157     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_25 32 agelallaGapgtGKttlal 51
                +g++++l G++g+GK+tl+ 
  EHT98269.1 28 EGTFVALLGPSGCGKSTLLR 47
                899**************985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.93
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 +++   ++ ++r++g + l v H
  EHT98269.1 170 QSMRREIRALQRALGLTMLYVTH 192
                 667778999999*******9999 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.2e-05     0.054      16      46 ..      25      55 ..      16      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.2e-05
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkeiienled 46
                e e+ +++ + Gp g+GK++Ll+ i+     
  EHT98269.1 25 EAEEGTFVALLGPSGCGKSTLLRTIAGLETA 55
                66778899999************99876644 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00012     0.092      17      49 ..      28      60 ..      16     178 .. 0.87
   2 ?   -1.5   0.0       2.3   1.7e+03     123     166 ..     136     180 ..     114     202 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrv 49
                +  +++l Gp G GK+t+l++++ + +a++g+v
  EHT98269.1 28 EGTFVALLGPSGCGKSTLLRTIAGLETADEGTV 60
                4468999****************9999885444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
      AAA_30 123 GDerQlasVeaGgvlrdlveaagigtaeLtevvRqke.seeraaa 166
                 G ++Q  + ++  + +  +   + +  +L+   Rq+   e+ra+ 
  EHT98269.1 136 GGQQQRVALGRAVIANNTLCLMDEPLSNLDAKLRQSMrREIRALQ 180
                 555555555554444444444455555566666665534444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00014      0.11       2      21 ..      32      53 ..      31      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
      AAA_28  2 ivitGgestGKTtlleaLa..a 21
                ++++G++++GK+tll+ +a  +
  EHT98269.1 32 VALLGPSGCGKSTLLRTIAglE 53
                89**************999442 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.13       3      23 ..      33      53 ..      32      69 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
                EEE--SSSSHHHHHHHGGGGB CS
       AAA_5  3 lLvGppGtgKselaerlaaal 23
                 L+Gp+G+gKs+l + +a + 
  EHT98269.1 33 ALLGPSGCGKSTLLRTIAGLE 53
                69**************99775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.09      17      41 ..      28      50 ..      15      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                TSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 17 elqslvvalvGmgGvGKttlakqil 41
                e    +val G  G+GK+tl++ i 
  EHT98269.1 28 EG--TFVALLGPSGCGKSTLLRTIA 50
                33..59***************9985 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00022      0.17      92     137 ..      34      77 ..      19      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
  Adeno_IVa2  92 iyGPtGsGksqllrnlissklisPiPetvifitPekdmipPeelka 137
                 + GP G+Gks llr++   +       tv f   +   +pP+e+k+
  EHT98269.1  34 LLGPSGCGKSTLLRTIAGLETA--DEGTVSFSHRDITHLPPSERKL 77 
                 57************99776554..4579999999999999999875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00026      0.19      19      39 ..      29      49 ..       8      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
      AAA_23 19 kgltlItGpNGaGKTTildAi 39
                  ++++ Gp G+GK+T+l+ i
  EHT98269.1 29 GTFVALLGPSGCGKSTLLRTI 49
                457789************987 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0045       3.4       6      40 ..     287     322 ..     285     327 .. 0.91
   2 ?    1.9   0.0      0.38   2.9e+02      32      62 ..     341     367 .]     337     367 .] 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0045
        TOBE   6 qlpgtVvvveplgseveVrvdlggga.tLtArvtrr 40 
                  l++ Vv  e  g++++V  +l g +  Lt++v++ 
  EHT98269.1 287 GLTANVVNYEYMGADTLVVCQLTGSQaVLTVTVPGM 322
                 5899*****************************986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.38
        TOBE  32 tLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 +L ++ +++++ +    +++++ a++k+ +v
  EHT98269.1 341 YLFSTASGKRCLH----AEQQMSASFKQYAV 367
                 5667777778888....**********9876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00047      0.35       4      38 ..      31      64 ..      28      90 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00047
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinl 38
                 +++ G+  +GK+tll++++  +   +e ++ ++ 
  EHT98269.1 31 FVALLGPSGCGKSTLLRTIAGLET-ADEGTVSFSH 64
                6899*************9996655.5555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2805.36
//
Query:       EHT98270.1  [L=155]
Description: putative extracellular solute-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-11   44.6   0.2    1.9e-11   44.3   0.2    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    1.2e-10   41.8   0.3    1.5e-10   41.5   0.3    1.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.049   13.4   0.2      0.075   12.8   0.2    1.5  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.2   3.2e-15   1.9e-11       1     104 [.      47     155 .]      47     155 .] 0.85

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.2e-15
                 HHHHHHHHH-.TEEEEEEE-.-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB-...-GGGSTTHHH-.HHHHHTT..--TS.----EEEE CS
   SBP_bac_8   1 klakefekkt.gvkvnvvta.asndleqklkaalaagtapdidvvwanedalatlaeeglla...dlsdldnlddl.tdalaav..gydgklygvPyas 91 
                 +l+++fek +  v ++ v+  +++++++k+ +a   g+ap++ v+   e  ++ l ++g+++   dl++ d  +++ ++++ a+   ++gk+ gvP++ 
  EHT98270.1  47 ALVADFEKIHpEVSIQPVYTgDYATTVTKALTAFRGGNAPQMAVIGDIE--AYSLMDAGAIVaasDLAQDDAGKKWiDSFYPAFlrHINGKVWGVPFQR 143
                 589*******99****99999********************88777764..5678888999956677776777776377888889999*********** PP

                 EEE-EEEEEHHHH CS
   SBP_bac_8  92 etpyvliynkdll 104
                 +t  vl++nk +l
  EHT98270.1 144 ST-VVLYWNKQAL 155
                 *8.7******875 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.3   2.5e-14   1.5e-10      10     123 ..      45     154 ..      39     155 .] 0.76

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.5e-14
                 HHHHHHHHHHHHHTTEEEEEEEECHHHHHH...HHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE. CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesvgsgslaq...kltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds. 104
                  +alv ++fek hp + ++ +++  g++a+   k  +a+ +G++p  ++ +++     l +ag+    ++++++++++++        +s++p+ l   
  EHT98270.1  45 VEALV-ADFEKIHPEVSIQPVYT--GDYATtvtKALTAFRGGNAP-QMAVIGDIEAYSLMDAGAIVAASDLAQDDAGKKWI-------DSFYPAFLRHi 132
                 67889.*****996666665555..88888888**********99.88888444444566778888888888888776664.......34667667755 PP

                 EE.ES.EEEE.EEEEEEEETTT CS
   SBP_bac_1 105 kv.ly.vPly.aargliYNkdl 123
                  + ++ vP++ ++ +l++Nk+ 
  EHT98270.1 133 NGkVWgVPFQrSTVVLYWNKQA 154
                 778*******77********97 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.2e-05     0.075       3      77 ..      35     112 ..      33     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
                 EEE-SSTHHHHHHHHHHHHH.HH---EEEEESSH..HHHHHHH...HHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEE CS
  SBP_bac_11   3 vaaagslaaalrelaaaFea.htgvkvevsaggs..gklarqi...adgarpDvwipassawlellaaaglvqaesavpla 77 
                 +a++g++ +++++l+a+Fe+ h++v ++  ++g    ++ +++   ++g++p++ + ++ ++  +l +ag+++  +a++la
  EHT98270.1  35 IAVGGAISHTVEALVADFEKiHPEVSIQPVYTGDyaTTVTKALtafRGGNAPQMAVIGDIEA-YSLMDAGAIV--AASDLA 112
                 7899**************999***99988888753255555555557778999999998544.7788888888..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1154.43
//
Query:       EHT98271.1  [L=254]
Description: periplasmic-binding component of an ABC superfamily glycerol-3-phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-23   84.1   6.6    1.4e-23   84.1   6.6    1.4  2  SBP_bac_8  Bacterial extracellular solute-binding protein
      3e-10   40.6   5.5      3e-10   40.6   5.5    1.4  2  SBP_bac_1  Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
       0.86   10.3   3.7        6.8    7.4   3.7    2.1  1  ABATE      Putative stress-induced transcription regulator


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   6.6   2.4e-27   1.4e-23     128     277 ..      20     188 ..       1     194 [. 0.76
   2 ?   -2.7   0.2      0.66     4e+03      17      35 ..     210     228 ..     206     247 .. 0.59

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 2.4e-27
                 SE..GG---G.GGGGGTHHETTEE---H........HHH.HHHHHHHHHHHHTT-EE....-S..--SSTTTTTSBSEEEE-TTHHHHHH-T.TTSEEE CS
   SBP_bac_8 128 gl..pdpasg.wlqaallakdgksldddg......gkdglkealellkklkdngkty....dtgadavsefanGevaftingswdiaaaqka.gkklga 212
                 g+  p+ ++g w+++++ a +g+ ld+ +      + ++ +e+l++l++l ++  +      ++ ++ ++f +G+ a++++ ++++  ++k+ ++++g+
  EHT98271.1  20 GIeiPTTPNGyWVFQGFAATNGAHLDNGKgtavyfNTPNNVETLQWLTDLGQKAGVSpkgaIAWGTTPQDFLSGKTAMMVTTTGNLSVVRKNaKFPFGV 118
                 3322444555444555555355555332234445766666***********77654435434788*************************99567**** PP

                 E.--...S--EEEEEEEEEEBTTS-HHHH.HHHHHHHHHTTSHHHHHHHHHH---BS-S-TTTHHHHHH- CS
   SBP_bac_8 213 i.vp...kqgsfaggkglavpknaknedl.aAldFlkwltspenqaalaektgyipvnksaalspevkkd 277
                 + +p   + gs++gg +l+v+k+a+ e++ aA++F++w+t pe+ a ++ +tgy+ + ++a+++p+ +++
  EHT98271.1 119 AmLPektQRGSPTGGGNLYVFKSASPEQQkAAMEFIRWVTAPEQAARWSIATGYVATSPAAWETPAMQDY 188
                 *667765558******************************************************999987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.66
                 EE--SSSHHHHHHHHHHTT CS
   SBP_bac_8  17 vtaasndleqklkaalaag 35 
                 +t++s ++++ l++a++a 
  EHT98271.1 210 STYNSVQIQEALNHAIEAA 228
                 5566666666666666653 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   5.5     5e-14     3e-10     163     314 ..      27     163 ..       2     164 .. 0.74
   2 ?   -2.9   0.1      0.84     5e+03     206     221 ..     226     241 ..     177     252 .. 0.55

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 5e-14
                 HHHHHHHHHHHHHHTGGGEECCCT..HHCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHC CS
   SBP_bac_1 163 gtayyfalalakslggkvfdkdgg..gldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaa 259
                  ++y+ ++ +a+ +g+ +++++g    ++      +++ ++ l++   l ++ +  ++    +    ++f +G++am++ +++             + +
  EHT98271.1  27 PNGYWVFQGFAATNGAHLDNGKGTavYFN------TPNNVETLQWLTDLGQKAGVSPKGAIAWGTTPQDFLSGKTAMMVTTTGN------------LSV 107
                 46788888888888888877776555555......555555555555555666666677777777779**********999877............9** PP

                 HHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCST.HHHHHHHHHHHTSHHHH CS
   SBP_bac_1 260 dkekpkeelgvaplPagkggkpgilgayglaipkgskn.peaAkkFldfllspeaq 314
                   +++k+ +gva+lP  + ++ +  g+  ++  ++s++ ++aA +F++++++pe++
  EHT98271.1 108 VRKNAKFPFGVAMLPEKTQRGSPTGGGNLYVFKSASPEqQKAAMEFIRWVTAPEQA 163
                 ***************999998885444444444455546777************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.84
                 HHHHHHHHHTTEEECS CS
   SBP_bac_1 206 vanltkelkgkgaenk 221
                 +a +t+ ++++ a+++
  EHT98271.1 226 EAAVTQSKTPAEALEA 241
                 2333333444444444 PP

>> ABATE  Putative stress-induced transcription regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.7    0.0011       6.8      21      80 ..     156     240 ..     146     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
                 HTTT-HHHHHH--TTHHHHHH...................................HHHHHHHHHHHHHHTHHHH.........H CS
       ABATE  21 lLttpadLaaWleaagllpagtaaagada.........................elararaLRealrallaaaaagdpppaaala 80 
                 + t p++ a+W  a g +++ +aa +++a                              ++  eal   ++aa+++   pa+al+
  EHT98271.1 156 WVTAPEQAARWSIATGYVATSPAAWETPAmqdyvkqvpqalvareqlkyaqpelSTYNSVQIQEALNHAIEAAVTQSKTPAEALE 240
                 6789*******************************76666666666666666553344556666666666666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2016.60
//
Query:       EHT98272.1  [L=305]
Description: binding-protein-dependent transport systems inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-14   54.5  18.7    1.2e-14   54.5  18.7    2.0  2  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
      0.018   15.2   0.1      0.043   14.0   0.1    1.6  1  RII_binding_1  RII binding domain
      0.049   12.1   1.2      0.078   11.4   1.2    1.3  1  GerA           Bacillus/Clostridium GerA spore germination pr


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.12   6.9e+02      55      89 ..      23      57 ..      17      58 .. 0.82
   2 !   54.5  18.7     2e-18   1.2e-14       2     182 ..      97     301 ..      78     304 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
  BPD_transp_1 55 pviillllsaapyvrlirraalrslpkdlveaara 89
                   + +l+l  ++++ +++++ al ++ ++l  aara
    EHT98272.1 23 CGYLLILPALGFLLLFTHYPALATVWESLFSAARA 57
                  56778888889999999999999999999999987 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 2e-18
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf...................vilsilghlilpviillllsaapyvrlirraalr 77 
                   + l++l+a  +nr+  ++ ++r  +++++ lP++++a l++++                     +l+  g++   +++++++  a+++++++ aal+
    EHT98272.1  97 VSLALLMAlaVNRRLAGNAAVRAAFFIPSLLPMIAIANLWLFFYtpqlgllnkllalfsvapvNWLGEPGTTLGCLMAVSVWREAGFFMIFYLAALQ 193
                   67899999999999999**********************9955499**************998888888888888********************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlv 171
                   +++  l eaa + Gas+   fr+v  P+++p+++  li+a+++++     +  ++++++ ++  l    +y +++ +    ++++++v+++l+l l+
    EHT98272.1 194 QIDPRLSEAAQIEGASKGYFFRRVQWPLLMPTTLFVLINASMNAFRIVDQVIAMTNGGPDNSSSLLLFYIYRTAFSYwdlPAAAAMTVVLLLILALI 290
                   *************************************************999999888844444444444444444445556666666666666666 PP

  BPD_transp_1 172 adilqrlldpr 182
                   a +   lld+r
    EHT98272.1 291 AVLKFSLLDKR 301
                   66666777776 PP

>> RII_binding_1  RII binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.2e-06     0.043       4      17 ..     234     247 ..     232     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.2e-06
  RII_binding_1   4 EeaanRivslVIqe 17 
                    +  a+Riv++VI++
     EHT98272.1 234 SMNAFRIVDQVIAM 247
                    5679*********9 PP

>> GerA  Bacillus/Clostridium GerA spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   1.3e-05     0.078     361     444 ..     113     195 ..      94     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.3e-05
        GerA 361 GqaaVeaglvspivvivvAltaiasFaipsyelslairllrflllilaallglyGivlglllllihlaslksfgvpYlsplapf 444
                 G+aaV+a ++ p ++ ++A++ +  F  +  +l+l ++ll ++ +    +lg  G +lg+l+ +    +   f + Yl+ l ++
  EHT98272.1 113 GNAAVRAAFFIPSLLPMIAIANLWLFFYTP-QLGLLNKLLALFSVAPVNWLGEPGTTLGCLMAVSVWREAGFFMIFYLAALQQI 195
                 99*********************9987765.79*****************************9999999999999999887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2343.75
//
Query:       EHT98273.1  [L=272]
Description: inner membrane component of binding-protein-dependent transport system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-07   29.6  30.1    8.1e-06   25.7  30.1    2.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7  30.1   4.5e-10   8.1e-06       3     179 ..      84     262 ..       8     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.5e-10
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   +l+ +aa   ++++ k + +l  li + l++ + vl++  +   + +++lg   +   i+l ++a ++++++ r+ ++s+p  l+ea  + Gasr+ 
    EHT98273.1  84 ILATMAAyalVRFRLKYSGFLFALILLQLMISPDVLILNNY---KTIGALGLRDTLTGIALPYFASAFAIFLLRQTFKSIPVVLEEATIVEGASRFY 177
                   44445555555555555555555555555554444444433...788999999******************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadilqrll 179
                   i+rk+ +P+a p  i+++++++ + ++++++++ ++ +    ++l+  ++ +  +e     + + +a++  +l+l+l++ ++qr +
    EHT98273.1 178 ILRKIYIPLARPIYIAFALVSISFHWNDFLWPLVITDSVK-VRPLTVGLQLFSAPEQGvqwALIGAATIMTTLPLLLLFLVFQRQF 262
                   ************************************5543.333333333333333336776777888888888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2061.53
//
Query:       EHT98274.1  [L=131]
Description: metallophosphoesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-09   36.7   0.1    7.1e-09   36.5   0.1    1.1  1  Metallophos    Calcineurin-like phosphoesterase
     0.0045   17.2   0.0     0.0052   17.0   0.0    1.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   7.9e-13   7.1e-09       2      75 ..      38     118 ..      37     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 7.9e-13
                  EEEEEESBTB..........TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS CS
  Metallophos   2 rilvigDlHl..........algggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe 75 
                  r+ +++D+++           +   +l++l ++++ +++e   d+v+ +GDlvdr   +++ +   +a+l +   p++++lGNH+
   EHT98274.1  38 RFGLLADPQYadvdpdisnnLYYRNGLNKLSQAIKAFNAE-PLDFVVTLGDLVDRHWQSYAAILPvFARLQH---PHAVVLGNHD 118
                  78899*********99999988889999999999999888.99****99******94444444443666666...********** PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.8e-07    0.0052      14      66 ..      65     122 ..      49     131 .] 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.8e-07
  Metallophos_2  14 daleavlealkevgvdaiihaGDl....eeeepevleellela.pvlaVrGNnDeevv 66 
                    + l ++++a++++ +d ++ +GDl     ++   +l  + +l  p  +V GN+D + +
     EHT98274.1  65 NKLSQAIKAFNAEPLDFVVTLGDLvdrhWQSYAAILPVFARLQhPHAVVLGNHDAQTI 122
                    66788899999999*********85543333335888888888999********2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1022.05
//
Query:       EHT98275.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98275.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98275.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98275.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98275.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98275.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT98275.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98275.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98275.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT98275.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98275.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98275.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHT98275.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98275.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98275.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98275.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT98275.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98275.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2761.18
//
Query:       EHT98276.1  [L=187]
Description: alkyl hydroperoxide reductase subunit C-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-25   88.7   0.0    3.5e-25   88.3   0.0    1.1  1  AhpC-TSA      AhpC/TSA family
    2.7e-20   72.6   0.3    3.4e-20   72.3   0.3    1.1  1  Redoxin       Redoxin
     0.0043   17.1   0.0     0.0065   16.6   0.0    1.4  1  AhpC-TSA_2    AhpC/TSA antioxidant enzyme
  ------ inclusion threshold ------
      0.013   14.8   0.1        1.3    8.3   0.1    2.2  2  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   7.8e-29   3.5e-25       2     121 ..      32     158 ..      31     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 7.8e-29
                 TSB----EEE...STTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H..SSEEEE-TTSHHH CS
    AhpC-TSA   2 gdkapdfelk...nadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes.lnfpllsDeegkva 95 
                 g+ apdf+l+    ++ +t+sl++  k+ pvvl+f+p++++ +Ct e+ a+a++ +efk++g++vigv++ + ++++kf + e   +f++++D+  kva
  EHT98276.1  32 GETAPDFKLEaalAGKETTFSLQQAlKKGPVVLYFFPAAFSAGCTLEAHAFAEATDEFKKQGATVIGVTAGNTDQIAKFSQLECrDKFTVAADPGAKVA 130
                 899*******877778899***8887556***************************************************98888************** PP

                 HHTT-EETT..TTECSCEEEEE-TTSBE CS
    AhpC-TSA  96 kaygvlkee..kglalratfvidkegki 121
                  +y+   e   k+l  r+++vi ++gki
  EHT98276.1 131 AEYKSTMEMkgKTLSDRTSYVIAPDGKI 158
                 ****998888999**************9 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.3   7.5e-24   3.4e-20       2     137 ..      31     168 ..      30     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 7.5e-24
                 TTSBB---E.CCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.TT-TSEEEE-TTSHH CS
     Redoxin   2 agdkaPdft.lplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.eglkfpvlsDgsaaf 97 
                 ag++aPdf+ ++ +a + +++sl++ +k+++vv++f+p+af+  C+ e+ ++++ ++++k+ g +v++v+a n ++  +f       kf+v++D++a++
  EHT98276.1  31 AGETAPDFKlEAALAGKETTFSLQQaLKKGPVVLYFFPAAFSAGCTLEAHAFAEATDEFKKQGATVIGVTAGNTDQIAKFSQLeCRDKFTVAADPGAKV 129
                 89*******64567889999***********************************9999*****************888877664559*********** PP

                 HHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCH CS
     Redoxin  98 tkalGlrleedaseglrtpryavidedgkvvylevepepe 137
                 +++++ + +e ++++l  +++ vi  dgk+   ++ ++pe
  EHT98276.1 130 AAEYKST-MEMKGKTLSDRTSYVIAPDGKILLSYTDKNPE 168
                 *****66.667788878888899999****9999888883 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0065       4      62 ..      84     144 ..      81     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
  AhpC-TSA_2   4 rdkpeldaagvklvaigigdp.sakkFvkltgf.pfelyvDpsaklyqalglkrglklkla 62 
                 + ++e++++g ++++++ g+  ++ kF +l+   +f + +Dp ak+ ++ + +  +k+k  
  EHT98276.1  84 EATDEFKKQGATVIGVTAGNTdQIAKFSQLECRdKFTVAADPGAKVAAEYKSTMEMKGKTL 144
                 56899****************77*****885444888*********999998888887765 PP

>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00029       1.3      25      66 ..      53      98 ..      33     123 .. 0.84
   2 ?    4.7   0.0    0.0036        16     215     245 ..     138     169 ..     115     183 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00029
                  HHHHHHT.TESEEEEETTTTTBSSSHHHHHHHHB...HSSSHHHHH CS
  CN_hydrolase 25 iaeAark.gadLivlPElfitgykeeahfleaAe...aglgetlal 66
                  +++A +k ++ L ++P +f  g+  eah ++ A+   + +g+t+ +
    EHT98276.1 53 LQQALKKgPVVLYFFPAAFSAGCTLEAHAFAEATdefKKQGATVIG 98
                  46688888***************99999999999888666666654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0036
                   HCETTEEEE--EEEE-TTS-EEEEC.CSSSTE CS
  CN_hydrolase 215 yeqlilwpvghSaiidpdGrilagl.geeeeg 245
                   ++++++ +   S++i+pdG+il    +++ e 
    EHT98276.1 138 EMKGKTLSDRTSYVIAPDGKILLSYtDKNPEA 169
                   56666777778**********97764666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1430.04
//
Query:       EHT98277.1  [L=411]
Description: protein-disulfide reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-15   55.4   0.0    9.7e-15   54.5   0.0    1.5  1  Thioredoxin_7   Thioredoxin-like
    1.5e-08   34.8  17.6    1.5e-08   34.8  17.6    1.8  2  DsbD            Cytochrome C biogenesis protein transmembrane
    0.00048   19.9   0.1     0.0008   19.1   0.1    1.3  1  Redoxin         Redoxin
    0.00063   20.2   0.0      0.001   19.5   0.0    1.3  1  Thioredoxin_2   Thioredoxin-like domain
     0.0012   18.8   0.0      0.002   18.1   0.0    1.2  1  Thioredox_DsbH  Protein of unknown function, DUF255
     0.0076   16.2   0.0      0.012   15.6   0.0    1.3  1  Thioredoxin     Thioredoxin
  ------ inclusion threshold ------
      0.012   15.7   0.6      0.012   15.7   0.6    2.2  2  Fumarate_red_C  Fumarate reductase subunit C
       0.19   11.9   0.3       0.19   11.9   0.3    2.6  3  CD225           Interferon-induced transmembrane protein


Domain annotation for each model (and alignments):
>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   4.3e-18   9.7e-15       3      82 ..     295     379 ..     293     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 4.3e-18
                    -SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH.HT-EEEEESS--S-GGG.....-TT---SSEEEEE- CS
  Thioredoxin_7   3 lsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaala.ekfvllrvdvterdani....leldeqgvPvvafld 82 
                    +++ ++ +++ + +gkpvlv+f+aswc tCq++er+ ls++ vk+a+a  + +++ +d t  ++ +     ++ + g+P ++++ 
     EHT98277.1 295 VAWTPQNVEAIKGQGKPVLVNFTASWCITCQVNERTSLSTQAVKQAMArTDTIYMIADSTKYNPDVeqalSDFGRGGLPLYVVYP 379
                    67888999***************************************************999997777877788899*****996 PP

>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8  17.6   6.6e-12   1.5e-08       1     179 [.       8     182 ..       3     195 .. 0.74
   2 ?   -1.4   0.0      0.81   1.8e+03      53      89 ..     234     270 ..     218     278 .. 0.62

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 6.6e-12
        DsbD   1 aflaGllsflsPCilpliPaylsyisgvsvedvktekkkvkvllkallFvlGlslvfvslgls...aaflgqllk.dvkevirrvaglivillGlhflg 95 
                 afl+G++  l PC++p+i +        +++  +++++  ++  + l F++G+++++v+l  +   a + g+ ++ +++     v++l+v+++  + l+
  EHT98277.1   8 AFLGGIILNLMPCVFPVISL-------KALSLLRHNAQPAHARAEGLAFLVGVVVTMVLLVSVlllARMGGASVGwGFQLQSPLVIALLVLIMVASALN 99 
                 47777777777777777654.......444444555555566789999999999988877544121344455555589999999999999999766666 PP

        DsbD  96 vfk.ievleklklllkikkkaelsvlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvglll 179
                 +f  +ev   l++  ++  +      g+ l G +  ++++PC++P +as + +a ++     +++++l  +lG+a+pf l++++ 
  EHT98277.1 100 LFGlFEVGLSLQRAGEVGGERGG-LTGSALTGALAIVVATPCSAPFMASAIGYAFTQPP-VISVVIFLSLALGFAAPFTLISFFP 182
                 55434455566666666666655.899*******9**********************95.5677778889************995 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.81
        DsbD  53 lslvfvslglsaaflgqllkdvkevirrvaglivill 89 
                 l+l f++  +++a+  q+++  + +++++++ +v+ll
  EHT98277.1 234 LVLSFAAWLYGMAQKRQMMGRRHWALHIATAAMVVLL 270
                 3444555556666666666666666666666666554 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   3.6e-07    0.0008      14      94 ..     295     383 ..     281     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.6e-07
                 ETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHH...HHHHHHH.....TT-TSEEEE-TT CS
     Redoxin  14 aatdgnsvslsefkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndaf...vkefwgk.....eglkfpvlsDgs 94 
                 +a  +++v+  + +gk+v+vnf ++ +c tC+ + +  l + a + +    d ++++ad+  +   v +++++     + l +++ +Dg+
  EHT98277.1 295 VAWTPQNVEAIKGQGKPVLVNFTAS-WCITCQVNERtSLSTQAVKQAMARTDTIYMIADSTKYnpdVEQALSDfgrggLPLYVVYPADGG 383
                 45567777777789***********.******9999988777666566778999999999999999*****9999988888888888875 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.4e-07     0.001       2      39 ..     306     343 ..     305     390 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.4e-07
  Thioredoxin_2   2 kgngkpvlvvftdpdCpyCkklkkelkelddvtvrvll 39 
                    kg+gkpvlv ft+++C  C+  +++  + ++v++ ++ 
     EHT98277.1 306 KGQGKPVLVNFTASWCITCQVNERTSLSTQAVKQAMAR 343
                    899*********************88888898887333 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.7e-07     0.002      19      92 ..     294     366 ..     287     388 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.7e-07
  Thioredox_DsbH  19 pvdWypwgeealekakeedkpillsiGysachWChvmekesfedeevaallne.sfvsvkvDree.rPdldkiyme 92 
                      v+W+p + ea    k + kp+l++   s+c  C+v e+ s + ++v + + +   + ++ D  +  Pd+++ + +
      EHT98277.1 294 AVAWTPQNVEA---IKGQGKPVLVNFTASWCITCQVNERTSLSTQAVKQAMARtDTIYMIADSTKyNPDVEQALSD 366
                     56666655555...5789******************************9997625788888865427999987655 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.4e-06     0.012      12      35 ..     303     326 ..     294     360 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.4e-06
                  HHHTTTSSEEEEEEE-TTSHHHHC CS
  Thioredoxin  12 eevakekklvlveFyApwCghCka 35 
                  e+++ + k+vlv+F+A+wC  C+ 
   EHT98277.1 303 EAIKGQGKPVLVNFTASWCITCQV 326
                  45666789**************95 PP

>> Fumarate_red_C  Fumarate reductase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.6   5.2e-06     0.012      33      88 ..      51     106 ..      43     137 .. 0.91
   2 ?   -1.6   0.3       1.2   2.6e+03      48      48 ..     248     248 ..     195     282 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.2e-06
  Fumarate_red_C  33 lvalfalvlllgllaLaqgeaayeafleflqnPlvlllniiaLaaallhavTwfel 88 
                     + ++ ++vll+ +l La+   a  ++   lq+Plv++l +++++a  l+ + +fe+
      EHT98277.1  51 VGVVVTMVLLVSVLLLARMGGASVGWGFQLQSPLVIALLVLIMVASALNLFGLFEV 106
                     5577899*****************************************99999986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
  Fumarate_red_C  48 L 48 
                      
      EHT98277.1 248 K 248
                     1 PP

>> CD225  Interferon-induced transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.7         8   1.8e+04      57      67 ..      48      58 ..      46      61 .. 0.69
   2 ?   -3.4   0.4       5.1   1.2e+04      12      24 ..     161     173 ..     158     175 .. 0.60
   3 ?   11.9   0.3   8.5e-05      0.19       9      52 ..     225     267 ..     223     278 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 8
       CD225 57 alvlgiiliil 67
                a+++g++++++
  EHT98277.1 48 AFLVGVVVTMV 58
                66777777765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.1
       CD225  12 ntlfcclplGivA 24 
                 +++f  l lG++A
  EHT98277.1 161 VVIFLSLALGFAA 173
                 4455566668887 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 8.5e-05
       CD225   9 sifntlfcclplGivAlvySvkvrdrkmvGdvegAqsasstAkl 52 
                 ++ ++l ccl+l ++A  y  ++++r+m+G  + A + +  A  
  EHT98277.1 225 ALAAILTCCLVLSFAAWLYG-MAQKRQMMGRRHWALHIATAAMV 267
                 6778899************8.589999***99999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2879.83
//
Query:       EHT98278.1  [L=230]
Description: putative racemase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-55  188.8   0.0    1.3e-55  188.7   0.0    1.0  1  Asp_Glu_race     Asp/Glu/Hydantoin racemase
  ------ inclusion threshold ------
      0.037   13.4   0.1       0.14   11.5   0.1    1.8  2  Pantoate_transf  Ketopantoate hydroxymethyltransferase
       0.11   11.9   0.0          1    8.7   0.0    2.3  2  Peripla_BP_1     Periplasmic binding proteins and sugar bindi


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.0   2.2e-59   1.3e-55       1     223 [.       7     224 ..       7     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 2.2e-59
                   EEECSCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CCS-TCHHHHHCH.T..THHHHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEE CS
  Asp_Glu_race   1 IGgmgpeatlsvlrklveatpaesdqehlplivlndsaipdrteaieeesgddpvlklleaakkLekagadaiviaCnTahavadelqkkikiPvlg 97 
                   IGgm++e+tl ++r ++e  +++ +  h+++++l++ ++ d+   ++e++++++ ++l eaa+ L+ aga+aiv++ nT+h vad++++++++P+l+
    EHT98278.1   7 IGGMSWESTLPYYRFINEGIRERLGGLHSARLLLHSVDFHDIEVCQREGNWAQAGKQLGEAARGLALAGAEAIVLCTNTMHKVADDIEAHCNLPFLH 103
                   9*********************************************99************************************************* PP

                   CHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHHTT-TTSHHHHHHHHHHHHHHTTT-SEEEE-STTH CS
  Asp_Glu_race  98 iveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelkaGevteearrailkllerlaergadaviLGCTel 194
                   i++at +a+ a g+ +v+lLgTr+t+++++y  +l++++ i+++vp++e++ ++n++i +el++G++te+ar+  l+++ +l+++ga+avi GCTe+
    EHT98278.1 104 IADATGRAITARGMTRVALLGTRYTMEQDFYLGRLQQRFSINTIVPEAEQRATLNHIIFDELCMGKFTESARQYYLDVITQLRDQGAQAVIFGCTEI 200
                   ************************************************************************************************* PP

                   HHHHHHHHHCC-TT.SEEEEHHHHHHHHH CS
  Asp_Glu_race 195 plllekaealekeksvpvidptdilaret 223
                    ll ++a++      +pv+d+t+++ar +
    EHT98278.1 201 GLLVPEAQS-----ALPVFDTTSLHARDA 224
                   *******55.....477*********987 PP

>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.3e-05      0.14     149     203 ..      50     105 ..      40     151 .. 0.80
   2 ?   -0.4   0.0       0.1     6e+02      72     111 ..     154     193 ..     137     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
  Pantoate_transf 149 gykvqgkteeeaeklledakaleeaGafalvl.EavpaelakeiteklsiptIGIG 203
                        + +g+ +++ ++l e a+ l+ aGa a+vl   + +++a+ i ++++ p + I+
       EHT98278.1  50 VCQREGNWAQAGKQLGEAARGLALAGAEAIVLcTNTMHKVADDIEAHCNLPFLHIA 105
                      567789999999*****************998567999************998775 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.1
  Pantoate_transf  72 rgakralvvadlPfgsyeaskeqalenAarllkeggadav 111
                      r++ ++++  +l +g + +s +q +   ++ l+ +ga+av
       EHT98278.1 154 RATLNHIIFDELCMGKFTESARQYYLDVITQLRDQGAQAV 193
                      5555555555666666666666666666666666666666 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00017         1      44      88 ..      62     107 ..       5     114 .. 0.83
   2 ?    0.2   0.0     0.069   4.1e+02      47      66 ..     180     199 ..     169     228 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00017
                   HHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS- CS
  Peripla_BP_1  44 dla.kaidllkakgidgliiatsdts..fdditakaesgipvialeda 88 
                   +++ +a++ l+  g+++++++t + +   ddi a  +   p++ + da
    EHT98278.1  62 KQLgEAARGLALAGAEAIVLCTNTMHkvADDIEAHCNL--PFLHIADA 107
                   34459999*************98888667888876655..77776665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.069
                   HHHHHHHHTT-SEEEEE-S- CS
  Peripla_BP_1  47 kaidllkakgidgliiatsd 66 
                     i +l+ +g+ ++i +   
    EHT98278.1 180 DVITQLRDQGAQAVIFGCTE 199
                   67899*********998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1678.79
//
Query:       EHT98279.1  [L=118]
Description: hypothetical protein CKS_2991 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-16   59.1   0.0    3.9e-16   58.5   0.0    1.3  1  Cupin_3       Protein of unknown function (DUF861)
    8.6e-05   22.2   0.0    0.00013   21.6   0.0    1.3  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.014   15.8   0.0      0.018   15.4   0.0    1.2  1  Ppnp          Pyrimidine/purine nucleoside phosphorylase
      0.031   14.2   0.0      0.039   13.8   0.0    1.2  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   8.8e-20   3.9e-16       7      74 .]      45     112 ..      41     112 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 8.8e-20
                 CEEEEEEEECEEEEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECCCEEEEEEEEE CS
     Cupin_3   7 fswgiwectpGkfrltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsgtwdvsetvrKaY 74 
                   +gi+ec+pG +r  +++ E++++l+G  ++t++g+ + ++++GD ++++++++gtw +  t+rK Y
  EHT98279.1  45 IDMGIFECSPGSYRRGVKQAEMMHFLSGTGSFTADGETPQHFKPGDTLFFEANTEGTWVMDTTMRKLY 112
                 578*******************************99999***************************99 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.9e-08   0.00013      18      54 ..      63      99 ..      52     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.9e-08
                SEEEEEEEEESEEEEEECTE.EEEEETTEEEEE-TT-E CS
     Cupin_2 18 gedeffyVleGegeltvdge.eveleaGdsvyfpagtp 54
                ++ e+ + l+G+g +t dge +++ ++Gd+++f+a+t+
  EHT98279.1 63 QA-EMMHFLSGTGSFTADGEtPQHFKPGDTLFFEANTE 99
                44.9999*********99888**************986 PP

>> Ppnp  Pyrimidine/purine nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0     4e-06     0.018      27      77 ..      48      99 ..      36     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4e-06
                EEE-..SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEE CS
        Ppnp 27 Gvml..pgeyeFgtsakEvmevvsGelevklpgeeewktykagesFevpanss 77
                G+ +  pg+y+ g +++E+m+ +sG+ + + +ge+  +++k g++   +an++
  EHT98279.1 48 GIFEcsPGSYRRGVKQAEMMHFLSGTGSFTADGET-PQHFKPGDTLFFEANTE 99
                6655448*************************998.89999999877777764 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.8e-06     0.039      20      57 ..      60      98 ..      47     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.8e-06
                  TT-SEEEEEEEEE-EEEEETTEE.EEE-TT-EEEE-TTS CS
  AraC_binding 20 vhdeyvihyvteGtgrlrlngrt.ydlgpGdlfLlppge 57
                     +++ + +++Gtg+++ +g+t ++ +pGd +++  ++
    EHT98279.1 60 GVKQAEMMHFLSGTGSFTADGETpQHFKPGDTLFFEANT 98
                  55678888999******9999999**********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 857.67
//
Query:       EHT98280.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98280.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98280.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98280.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98280.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 814.06
//
Query:       EHT98281.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98281.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 928.23
//
Query:       EHT98282.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-97  325.7   3.5    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.5   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.1  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.5    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT98282.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98282.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98282.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98282.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98282.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98282.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98282.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98282.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98282.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98282.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98282.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT98282.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98282.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98282.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98282.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98282.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98282.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98282.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98282.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98282.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98282.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98282.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98282.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98282.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98282.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98282.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98282.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98282.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98282.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98282.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98282.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98282.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98282.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1048  (0.0584528); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 3825.37
//
Query:       EHT98283.1  [L=52]
Description: hypothetical protein CKS_2985 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 397.94
//
Query:       EHT98284.1  [L=183]
Description: hypothetical protein CKS_2984 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   48.4   9.3    1.3e-12   48.4   9.3    2.8  3  DsbB      Disulfide bond formation protein DsbB


Domain annotation for each model (and alignments):
>> DsbB  Disulfide bond formation protein DsbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   9.3   7.3e-17   1.3e-12       2      86 ..      11      95 ..      10      98 .. 0.94
   2 !    3.6   0.8    0.0046        83     122     144 ..     101     123 ..      97     127 .. 0.81
   3 ?   -0.1   0.0     0.065   1.2e+03       9      22 ..     148     161 ..     139     176 .. 0.59

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 7.3e-17
                HHHHHHHHHHHHHHHHHHHHHHCTTTTSXXSHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSX- CS
        DsbB  2 rllllllalaslallalAlyfqhvlglePCelCvyqRlallliallallaaiapkrllllllallaalvgaalaarhvgvellpw 86
                r+l ll++l++ ++l +A+yfq  +   PC+lC++qR allli+ + l+ ++  ++ l +++++++al+ aa+aarh+ ++ lp 
  EHT98284.1 11 RPLNLLMLLLVSVALFCAFYFQLRFFDLPCPLCLLQRAALLLIGSGLLFNLCFGNKKLHYGMVIIGALALAAVAARHIFLHILPG 95
                8999***********************************************7777789**********************98876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0046
                 XECTTSEHHHHHHHHHHHHHHHH CS
        DsbB 122 wkllglsmaqwnllifallllll 144
                 + ++gl++ +w++++ ++++  +
  EHT98284.1 101 LPFFGLHLYTWSFILAVAIVFGV 123
                 579**********9998877554 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.065
                 HHHHHHHHHHHHHH CS
        DsbB   9 alaslallalAlyf 22 
                 ++a++all++A ++
  EHT98284.1 148 VVAVFALLMVANLL 161
                 33344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1558.71
//
Query:       EHT98285.1  [L=259]
Description: phytochelatin synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-50  171.5   0.0    1.7e-50  171.2   0.0    1.1  1  Phytochelatin    Phytochelatin synthase
     0.0021   18.6   0.0       0.12   12.9   0.0    2.2  1  Peptidase_C39_2  Peptidase_C39 like family


Domain annotation for each model (and alignments):
>> Phytochelatin  Phytochelatin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   1.9e-54   1.7e-50       8     212 ..      22     252 ..      16     253 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 1.9e-54
                    TTEEESSSHHHHHHHHT-SB-...TTHHHHHHH----SSCCGHHHHHHHHHHHHHT--.....................---TTTTT-----TTTC CS
  Phytochelatin   8 ekliafsseeGkkllkealaegtaedyfpLaeqfetqsepayCGlaslvmvLnaLevd.....................pkrkwkgpwrwfteell 82 
                    +++++ +s+eG ++l++a+ +   +d+f+La qfe q+++ yCG+as+++vLn+L+++                      ++ w+  w+ +t++++
     EHT98285.1  22 SQIVDWQSPEGIQRLTQATVK---QDFFSLAPQFEGQNNKVYCGVASATIVLNSLRLHknkkiepdsslintedrvyfpKNNGWQPFWNRYTQTSV 114
                    578999***************...*******************************9989999****************666779999*******99 PP

                    CGSH...........S-HHHHHHH---HHHHHHHHHTTT-EEEEEEGGG.S-HHHHHHHHHHHCTSTT..EEEEEEEEGGGGTSSSSEEEEEEEEE CS
  Phytochelatin  83 ldcc...........iklekvkkeGitleelaelakcnglkvevvrase.lsleefrklvkevlkseeedkfvvvnysRkalgqtgeGHfSPigaY 166
                    ++             ++    ++ G++le+   l+++ glkv++v  ++ ++ ++++k +++++++++  +fv+vn+ R+a+gq+g+GHfSP+gaY
     EHT98285.1 115 VKYSskprieifgkpKTPGGQADYGLHLEDERRLLSNAGLKVKAVPVKDlAQQDKMKKEIIAAMQQDN--SFVIVNFLRSAIGQSGGGHFSPLGAY 208
                    8885689*****998556666778*********************9988678899***********65..************************** PP

                    ETTTTEEEE--S-TTT---EEEEHHHHHHHHSSEETTTTEE-EEEE CS
  Phytochelatin 167 deesdsvLiLDvarfkYppvWvkleeLyeamktlDkatgksRGyvl 212
                    d++sds+Li+Dv++  +p++W++ ++L+++m+tlD a   +RGy+l
     EHT98285.1 209 DAKSDSFLIMDVSNTEHPWIWIDSQTLFKGMNTLDGAE--NRGYLL 252
                    ************************************96..79**97 PP

>> Peptidase_C39_2  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.4e-05      0.12       7     142 ..      54     219 ..      44     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
  Peptidase_C39_2   7 nQldelpngCeptslamvlsyl....gkkvtqnelakelktns.......................sgdpntgfvgnit...dksglgvynepi 70 
                       Q  +++ +C+++s+++vl+ l    +kk+++++   +  +                         s++p+  + g+++    +  +g++ e  
       EHT98285.1  54 GQ--NNKVYCGVASATIVLNSLrlhkNKKIEPDSSLINTEDRVyfpknngwqpfwnrytqtsvvkySSKPRIEIFGKPKtpgGQADYGLHLEDE 145
                      34..89999**********998887788888888776666666777677777776666666666665555555555555555555555555555 PP

  Peptidase_C39_2  71 vklaekyglkvsdtrgssi.......eevkkeidagkPvvvsvttfkplndgeikftssgHlvvitGYdekgkrvyvnD 142
                        l ++ glkv+ +  +++       +e++ ++++++ +v+   +      + i+ + +gH+  +  Yd k++ ++++D
       EHT98285.1 146 RRLLSNAGLKVKAVPVKDLaqqdkmkKEIIAAMQQDNSFVIVN-F----LRSAIGQSGGGHFSPLGAYDAKSDSFLIMD 219
                      5555555553333333333333334466666666655555544.2....123457777777777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1851.43
//
Query:       EHT98286.1  [L=348]
Description: gamma-glutamyltranspeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-95  320.7   0.0    2.1e-95  320.4   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.4   0.0   1.2e-99   2.1e-95       2     298 ..      49     345 ..      48     347 .. 0.98

  Alignments for each domain:
  == domain 1  score: 320.4 bits;  conditional E-value: 1.2e-99
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTT...TSCBCCHHHHSSGGG-BB--HHHHHHH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmf...dkegdsklsktgalavgVPGevaglee 92 
                      ++L++GGnA+DAavA+ ++ +vv+p+  +iGGGgf+l++ a++k++ ++++retAPaaa++dm+   +++  s++s  g+ av+VPG+v+gl++
       EHT98286.1  49 DILKQGGNAIDAAVAVGYAQAVVNPCCGNIGGGGFMLIHLADGKDT-FINFRETAPAAARADMYldpQGKVRSDASLHGYSAVAVPGTVMGLDY 141
                      8*******************************************99.9******************999************************* PP

                      HHHHH-SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEE.TTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHHHH CS
  G_glu_transpept  93 ahkkyGklpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlp.egevlkagellkqpalAktLerlaeeGaeaFYkGelAek 185
                      a ++yGkl+ +++++pai+lar+Gf +++a  + l+++ +r+++d ++a+ Fl+ +g++l++g+ lkqp+lA+tL++++++G++ FYk  + ++
       EHT98286.1 142 AQRHYGKLSRQQVMAPAIRLARQGFILTRADTDILDTTVNRFRTDAQAARWFLRpDGSPLQPGDNLKQPELAETLSHISQSGTDYFYKQPIPQR 235
                      ****************************************************9967778*********************************** PP

                      HHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SST CS
  G_glu_transpept 186 lvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylgDp 279
                      + a ++k g i+t +D+  y+v   +pl+++yrg++ +++pppssgg++l+++ nil+g+d  +l+ nsa+++h+++Eam++ay dR++ lgDp
       EHT98286.1 236 VEAAVAKGGAIITSADFVRYHVTESAPLRCHYRGYEFISSPPPSSGGVALCEMVNILSGYDIRALGFNSADSVHVMTEAMRIAYFDRNNSLGDP 329
                      ********************************************************************************************** PP

                      TTSSSGHCHHHHHT-HHHH CS
  G_glu_transpept 280 dfvknptelveellskeya 298
                      +f++np   +++lls +ya
       EHT98286.1 330 EFIHNP---LDKLLSTSYA 345
                      ***988...*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2553.67
//
Query:       EHT98287.1  [L=240]
Description: gamma-glutamyltranspeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-69  234.8   0.0    2.2e-69  234.6   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6   0.0   1.2e-73   2.2e-69     302     498 ..       2     208 ..       1     233 [. 0.92

  Alignments for each domain:
  == domain 1  score: 234.6 bits;  conditional E-value: 1.2e-73
                      HTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSBS..TS..TTSCSTTSTTB--TT CS
  G_glu_transpept 302 aklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfst..gvenafgldpspanaiePg 393
                      ++ I+++ atp s + ++++ + e+ +Tth+svvD++gnaVS t+tin  FG+ v+ pgtG+ Ln+emddf+t  g +n+fgl++ + nai+Pg
       EHT98287.1   2 RQGIHPTDATP-SRLPESKQVNGERPETTHYSVVDEQGNAVSTTYTINGRFGAVVMAPGTGFFLNDEMDDFTTkiGEKNMFGLVQGANNAIAPG 94 
                      7889*******.78999999999*********************************************************************** PP

                      ----B----EEEEETTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEESSSSTEEEEST.TS.HHHHHHHHHTTSEEEESSST CS
  G_glu_transpept 394 kRplssmaPtivlkdgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihhqllpdkvevEe.gfseevveeLearGhkvkeveds 486
                      kRplssmaPtiv++d+++ lvlG++GGsrii+a lqv++n++d+g+ +qeavdapr+hhq+lpd+v++E+ g+s ++++ L++rG+k++e+ ++
       EHT98287.1  95 KRPLSSMAPTIVTHDNEVFLVLGSPGGSRIITASLQVALNIIDHGMLPQEAVDAPRVHHQWLPDEVYYEQhGLSFDTLRLLRQRGYKLTEQTPW 188
                      ********************************************************************************************** PP

                      CCCEEEEEEEE........T CS
  G_glu_transpept 487 ssvvaavavak........e 498
                      ++   ++++ k        +
       EHT98287.1 189 GATELIMVAPKlsegkkaaD 208
                      ****9999988655444330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1886.27
//
Query:       EHT98288.1  [L=236]
Description: amino acid racemase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-31  109.5   0.1    2.4e-31  109.3   0.1    1.0  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase
  ------ inclusion threshold ------
      0.076   13.0   0.0       0.17   11.9   0.0    1.7  2  PA            PA domain


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.1   2.7e-35   2.4e-31       1     223 [.       8     225 ..       8     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 2.7e-35
                   EEECSCCCCHHHHHHHHHHBTTSSGG....GS..EEEEE-CC..S-TCHHHHHCH.T..THH.HHHHHHHHHHCTTESEEEE--CHHHHHHHHHH.H CS
  Asp_Glu_race   1 IGgmgpeatlsvlrklveatpaesdq....ehlplivlndsa..ipdrteaieeesgddpvl.klleaakkLekagadaiviaCnTahavadelq.k 89 
                   + gmgp +t+ ++  lv +++++ +     +++++++++ ++  +pdr  +        ++   l++++  L kag+ +i+++Cn ah ++ e+q +
    EHT98288.1   8 LAGMGPRSTAPFIDMLVDECQKQYGArfdiDYPKMHIISLPTpfFPDRVVED------AAMSaALRDGISDLVKAGVNLIAVPCNVAHCYFAEMQeA 98 
                   579*********9999988887664411115556666666665555555555......344459*******************************77 PP

                   H-SSEEEECHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHH.TT-TTSHHHHHHHHHHHHHH.TTT- CS
  Asp_Glu_race  90 kikiPvlgiveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelk.aGevteearrailkllerla.erga 184
                    + iPvl+i+++++e+l a +++++++++T  tl++g+yq++l+  +g + v  ++ ++ +   +i   +k +G  ++e   + ++l++ la ++ga
    EHT98288.1  99 SAGIPVLHIADCALEHLPA-ETENIAVIATASTLDAGFYQQRLHI-AGKRCVSSDPLRAITTG-LIA-LVKqRGFSDPEVITQWRTLIS-LAqDSGA 190
                   79*****************.*************************.6*999999999888764.888.89999*999999999999999.655**** PP

                   SEEEE-STTHHHHHHHHHHCC-TT.SEEEEHHHHHHHHH CS
  Asp_Glu_race 185 daviLGCTelplllekaealekeksvpvidptdilaret 223
                   +a++++CT+++ ll+++    +++++p++d+++ la+++
    EHT98288.1 191 QALLIACTDISPLLKSH----PQQPLPIVDTATSLAEAV 225
                   *************9999....4568***********986 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1   9.9e+03      71      81 ..      97     107 ..      90     115 .. 0.72
   2 ?   11.9   0.0   1.9e-05      0.17      25      54 ..     158     206 ..     117     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
          PA  71 pdgitiPavgv 81 
                 + + +iP+ ++
  EHT98288.1  97 EASAGIPVLHI 107
                 34578998887 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.9e-05
          PA  25 kGkivLv.qr.........tfaeKarnAqaaGAagviiv.........n 54 
                 +G i+Lv qr         ++++ +  Aq+ GA +++i+         +
  EHT98288.1 158 TGLIALVkQRgfsdpevitQWRTLISLAQDSGAQALLIActdispllkS 206
                 577****44566556555555*****************97665433331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1759.20
//
Query:       EHT98289.1  [L=168]
Description: hypothetical protein CKS_2975 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-22   79.5  16.4    2.4e-22   79.3  16.4    1.0  1  MFS_1     Major Facilitator Superfamily
      1e-10   41.1   3.5    1.2e-10   40.8   3.5    1.1  1  Sugar_tr  Sugar (and other) transporter
    0.00052   18.6   3.4    0.00059   18.4   3.4    1.1  1  TRI12     Fungal trichothecene efflux pump (TRI12)
     0.0013   17.4   3.5     0.0022   16.6   3.5    1.4  1  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.038   12.4   3.1      0.042   12.3   3.1    1.1  1  MFS_3     Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3  16.4   6.7e-26   2.4e-22       2     145 ..      19     161 ..      16     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 6.7e-26
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +l++++  ++ ++++p+lp ++ + lg + + ++l +tl  + +++a+l++G+lsd +Grr+v l+gl +f+lg l++++ +++  ++l++ +++Glg 
  EHT98289.1  19 VLLVAMGQFNNTLFIPSLP-HMRSPLGTNDALLQLSVTLTLVSFGLAQLFYGPLSDYYGRRPVALIGLSIFFLGNLACFL-ATSGpAFLAGKIVTGLGV 115
                 4566667788888999999.******************************************************444444.67777************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla 145
                 g++ p++ a+++d++++++  + +g+l +++s+ +++ p++gg++ 
  EHT98289.1 116 GCVGPIARAIARDMSHGKKLLKLMGILVMFMSVTPAVSPMAGGAIQ 161
                 *******************************************986 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   3.5   3.4e-14   1.2e-10      38     145 ..      40     145 ..      11     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.4e-14
                 HHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCH CS
    Sugar_tr  38 ksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklR 136
                 +s+  + + l+ l+v ++lv   + +lf g+l+d++GR+++ li+  +f+ g++ +++a+   s  ++++g++++G+gvG++  ++   +  +++ k+ 
  EHT98289.1  40 RSPLGTNDALLQLSVTLTLVSFGLAQLFYGPLSDYYGRRPVALIGLSIFFLGNLACFLAT---SGPAFLAGKIVTGLGVGCVGPIARAIARDMSHGKKL 135
                 5555556667778888888888899***********************************...88********************99999999985544 PP

                 .HHHHHHHHH CS
    Sugar_tr 137 .galvslyql 145
                  + ++ l  +
  EHT98289.1 136 lKLMGILVMF 145
                 2555555444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   3.4   1.7e-07   0.00059      70     193 ..      39     162 ..      16     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-07
       TRI12  70 ilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelmsnktkflg 167
                 +   +g  +    l  tl  +   ++ l  g l+d +grrp+ ++   + ++g +    at   ++la   + g+  g  g     +   ms   k+l 
  EHT98289.1  39 MRSPLGTNDALlQLSVTLTLVSFGLAQLFYGPLSDYYGRRPVALIGLSIFFLGNLACFLATSGPAFLAGKIVTGLGVGCVGPIARAIARDMSHGKKLLK 137
                 555555554431344566667778889******************************************************************999999 PP

       TRI12 168 llivsip.vvvtsglspylgqrlaiqg 193
                 l+ + +  + vt ++sp  g   aiqg
  EHT98289.1 138 LMGILVMfMSVTPAVSPMAGG--AIQG 162
                 886554404456667888775..4555 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.5   6.2e-07    0.0022     223     369 ..       6     156 ..       2     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.2e-07
       MFS_2 223 nraflillllfllaalalgvlnglllY.....yltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnll 315
                 n++  +l +++++++l  + +++++l+      ++  lg n++  +++ +++ +s  l+ ++  pl   +g++ ++l+g+++ +++ + ++l+  ++  
  EHT98289.1   6 NKQSGTLSVGIIIVLLVAMGQFNNTLFipslpHMRSPLGtNDALLQLSVTLTLVSFGLAQLFYGPLSDYYGRRPVALIGLSIFFLGNLACFLA--TSGP 102
                 5666666667777777777777777763333359999**888888888888899989**************************9999999999..8889 PP

       MFS_2 316 lflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfiskla 369
                 +fl+  +++g+gvg  + ++ ++  d+     l        +f++v+ ++s +a
  EHT98289.1 103 AFLAGKIVTGLGVGCVGPIARAIARDMSHGKKLLKLMGILVMFMSVTPAVSPMA 156
                 9*********************99998777766665555555666666665555 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.1   1.2e-05     0.042      47     165 ..      47     163 ..      17     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
       MFS_3  47 vAlvqaaatLPiflls...ilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAva 142
                  Al+q + tL ++ +    ++ G l+D + rR v l++ ++  l+ +     a +  +s  + la  +++g+G     P  +A+  ++ + +++ + + 
  EHT98289.1  47 DALLQLSVTLTLVSFGlaqLFYGPLSDYYGRRPVALIGLSIFFLGNL-----ACFLATSGPAFLAGKIVTGLGVGCVGPIARAIARDMSHGKKLLKLMG 140
                 599*****99998654112789**************99998776653.....44444556678889999***************************999 PP

       MFS_3 143 LnsvginiaRsvGPAlgGvlvaa 165
                 +  + + ++ +v P  gG +  +
  EHT98289.1 141 ILVMFMSVTPAVSPMAGGAIQGF 163
                 999999********999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1183.36
//
Query:       EHT98290.1  [L=412]
Description: hypothetical protein CKS_2974 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-07   30.5   0.0    5.1e-07   29.4   0.0    1.6  2  ATP-grasp_4  ATP-grasp domain
     0.0003   20.9   0.0     0.0005   20.1   0.0    1.4  1  ATP-grasp_3  ATP-grasp domain
    0.00032   21.2   0.0    0.00075   20.0   0.0    1.7  1  ATPgrasp_N   ATP-grasp N-terminal domain


Domain annotation for each model (and alignments):
>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         1   6.1e+03      70      86 ..      34      50 ..      32      66 .. 0.69
   2 !   29.4   0.0   8.5e-11   5.1e-07      22     157 ..     166     290 ..     146     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1
  ATP-grasp_4 70 ayfdeeGepvilnilkk 86
                  y+++eG ++i    ++
   EHT98290.1 34 NYWNQEGDALIQLAQER 50
                 59999999998765544 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 8.5e-11
  ATP-grasp_4  22 nneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrlyvtsakvieetlealeellke 119
                  +       ++++++e+++ a ++ + ++++ +++++ e+ +Ge +++++y  ++ +  ++  +k+  + + +v+   +   +++ ++  e+ ++++ +
   EHT98290.1 166 Q-------TFDELKEKIALAIKKIP-DYLNPNQYIIQEFFDGELVSIEGYACHN-KVNFIGATKRFKYGNTEVQ-HKFPYQNDMGNTAYEKCKNVVCT 253
                  4.......45566666666667777.5899*********************999.7777777666666677775.5566678999************* PP

  ATP-grasp_4 120 vnallglknfpvHiElrvsedgkiipiEvnplrfaglc 157
                  +  ++ ++++ +HiE+ v+ d ++ +i+ n  r +g  
   EHT98290.1 254 LIDRADFNYGFFHIEFMVNGD-EVRLIDANMGRPGGTN 290
                  *******************98.7999****99999875 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.4e-08    0.0005      18     155 ..     132     282 ..     125     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.4e-08
                  --.....-EESS--SSSEEEEESS-------B--SS--TTE...................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET.... CS
  ATP-grasp_3  18 vP.tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieGkplSvsllsdgekvlvlavnrqliekaeke 102
                  +P +++e+   ++ + k+++Kp   ag+ +++ ++ ++e++++i+               ++qef +G+ +S++  + ++kv ++   + +    ++e
   EHT98290.1 132 TPeKTIEDFISASGAAKFIAKPGLTAGAIGTFTFQTFDELKEKIALAIkkipdylnpnqyIIQEFFDGELVSIEGYACHNKVNFIGATKRFKYG-NTE 228
                  5634445555566699*********************999988886557899**********************99999999999988877533.222 PP

                  ....TEEEEEEES----HHHHHHHHHHHHHTTST....T--EEEEEEEEESS.SEEEEEEE CS
  ATP-grasp_3 103 ....fvyaGnvtpietelkeevvelaeevvekle....glaGyvGvDlvlkdeepyviEvN 155
                      f y+  + +  +e+       +++vv  l        G++ ++++++ +e  +i+ N
   EHT98290.1 229 vqhkFPYQNDMGNTAYEK-------CKNVVCTLIdradFNYGFFHIEFMVNGDEVRLIDAN 282
                  223455665555555444.......444433333222134689999999999999999888 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.3e-07   0.00075       5      82 .]      23      99 ..      19      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.3e-07
                HHTT-EEEEEEETTS----S-TT..EEEEEEE-TTT-HHHHHHHHHHHHHHS--SEEE---GGGHHHHHHHHHHTT-SS CS
  ATPgrasp_N  5 kaLGikvvlvdeedewapeelae.lvekfipldlaqdpdaaleavralsrerpvdGivtftdlavplvArlaeaLgLPg 82
                + LG + v++++  +   + l +   e++i++d + d +++ ++v+a+   +++ G++t+ d ++ ++A + ++LgLPg
  EHT98290.1 23 RNLGYEPVFLTNYWNQEGDALIQlAQERAIFCDTT-DIEDIKRVVNAFG-IEKIAGLTTLLDSRLAIIATANKELGLPG 99
                67888888888886555555544456799999999.7889999999865.568*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2936.28
//
Query:       EHT98291.1  [L=77]
Description: hypothetical protein CKS_2972 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-06   26.5   0.2    3.2e-06   26.4   0.2    1.0  1  tRNA-synt_2  tRNA synthetases class II (D, K and N)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   1.8e-10   3.2e-06      91     150 ..      11      73 ..       3      77 .] 0.86

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.8e-10
                  HSEEEEEEEEE-...-S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSC CS
                  xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  91 idrvfqiaraFR...aEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessa 150
                  +++v+++a++ R   + + ++ +hl  F q+e+e+   +++d+++  e++++s++ke+le+s+
   EHT98291.1  11 LEKVYCVAPCLRlvmDGEEHSGKHLYNFFQFEIEWRTSSMSDVFKQGEKILTSMAKEILEDST 73 
                  79**********77745556688999********************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 580.44
//
Query:       EHT98292.1  [L=224]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-25   89.2   0.9    3.4e-25   89.0   0.9    1.1  1  DDE_Tnp_1    Transposase DDE domain
    2.1e-13   50.6   0.0    4.8e-12   46.2   0.0    2.3  2  DDE_Tnp_1_5  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.9   3.8e-29   3.4e-25       5     213 ..      33     210 ..      29     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 3.8e-29
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHT98292.1  33 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 130
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r++++ +
  EHT98292.1 131 IPPRKGAGYWPV--EYAERNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDGQV 199
                 **********55..44445666666666666666666666...........................****************.555************ PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHT98292.1 200 AEALAMVRALN 210
                 ****9999998 PP

>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   5.4e-16   4.8e-12      66     112 .]       1      47 [.       1      47 [. 0.92
   2 ?    2.0   0.0     0.028   2.5e+02      39      67 ..     177     207 ..     148     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.4e-16
  DDE_Tnp_1_5  66 aglellvpdystlsrraktlevkipvkrkskglhlvvdstGlkvlge 112
                  +gl+l++pdys +s+rak+++v++++ ++ + +hlv+dstGlkv+ge
   EHT98292.1   1 MGLPLRCPDYSSVSKRAKSVNVSFKTPTRGEIAHLVIDSTGLKVFGE 47 
                  6899********************77777777*************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.028
  DDE_Tnp_1_5  39 qtcltvkvlfk..lplRqlqGfvqsllklag 67 
                  + +  +k+lf+  l+lR   G v+  l+++ 
   EHT98292.1 177 TAMYRIKQLFGgsLTLRDYDGQVAEALAMVR 207
                  34567999**545999*****9988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1783.75
//
Query:       EHT98293.1  [L=82]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-25   89.1   0.0    2.6e-25   88.9   0.0    1.1  1  DDE_Tnp_1_5  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   1.4e-29   2.6e-25       1      63 [.      19      81 ..      19      82 .] 0.98

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.4e-29
  DDE_Tnp_1_5  1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsll 63
                 ++RGs+t+wld+eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s++
   EHT98293.1 19 INRGSITFWLDDEAIQAWYESPTPPSRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIF 81
                 59************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 617.05
//
Query:       EHT98294.1  [L=82]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-25   89.1   0.0    2.6e-25   88.9   0.0    1.1  1  DDE_Tnp_1_5  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   1.4e-29   2.6e-25       1      63 [.      19      81 ..      19      82 .] 0.98

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 1.4e-29
  DDE_Tnp_1_5  1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsll 63
                 ++RGs+t+wld+eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s++
   EHT98294.1 19 INRGSITFWLDDEAIQAWYESPTPPSRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIF 81
                 59************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 720.58
//
Query:       EHT98295.1  [L=224]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-25   89.2   0.9    3.4e-25   89.0   0.9    1.1  1  DDE_Tnp_1    Transposase DDE domain
    2.1e-13   50.6   0.0    4.8e-12   46.2   0.0    2.3  2  DDE_Tnp_1_5  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.9   3.8e-29   3.4e-25       5     213 ..      33     210 ..      29     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 3.8e-29
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHT98295.1  33 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 130
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r++++ +
  EHT98295.1 131 IPPRKGAGYWPV--EYAERNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDGQV 199
                 **********55..44445666666666666666666666...........................****************.555************ PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHT98295.1 200 AEALAMVRALN 210
                 ****9999998 PP

>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   5.4e-16   4.8e-12      66     112 .]       1      47 [.       1      47 [. 0.92
   2 ?    2.0   0.0     0.028   2.5e+02      39      67 ..     177     207 ..     148     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.4e-16
  DDE_Tnp_1_5  66 aglellvpdystlsrraktlevkipvkrkskglhlvvdstGlkvlge 112
                  +gl+l++pdys +s+rak+++v++++ ++ + +hlv+dstGlkv+ge
   EHT98295.1   1 MGLPLRCPDYSSVSKRAKSVNVSFKTPTRGEIAHLVIDSTGLKVFGE 47 
                  6899********************77777777*************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.028
  DDE_Tnp_1_5  39 qtcltvkvlfk..lplRqlqGfvqsllklag 67 
                  + +  +k+lf+  l+lR   G v+  l+++ 
   EHT98295.1 177 TAMYRIKQLFGgsLTLRDYDGQVAEALAMVR 207
                  34567999**545999*****9988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1830.33
//
Query:       EHT98296.1  [L=136]
Description: hypothetical protein CKS_2963 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.18   11.9   0.0    1.1  1  CesT      Tir chaperone protein (CesT) family


Domain annotation for each model (and alignments):
>> CesT  Tir chaperone protein (CesT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     1e-05      0.18      19     111 ..      28     120 ..      23     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1e-05
                 TTSEEEEEETTTEEEEEEEESTTEEEEEEEEEEGGGCCTTEHHHHHHHHHCHHSCTTT-EEEEETTTTEEEEEEEEEGCC--HHHHHHHHHHH CS
        CesT  19 engvcsLsidddvllllleedsdeLllsaplgrlppdedgallerlLeaNllgartaggalgldeesglllLwarlelesldeeaLealleal 111
                 +++v+ L +d d  ++l+ +   ++ + a++  + +  ++a  e+lL  N ++  +   ++g d +  +l++ +r+ l +l+ee    +++++
  EHT98296.1  28 DDDVYLLVFDHDLSIHLIGTLPGYINIVATFVAPADWFTPAGMESLLMENRFSLTHPTVVFGMDSQRKKLIISTRQLLSELNEESVIKMFRNI 120
                 67889999999999999999999999999999999998889*********9999999*************************99876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1001.85
//
Query:       EHT98297.1  [L=303]
Description: hypothetical protein CKS_2962 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.071   13.6   0.3       0.18   12.3   0.2    1.9  1  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     1e-05      0.18      22      71 ..      89     138 ..      75     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
  Transglut_core  22 yewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGip 71 
                     ++w r + +y+++     ++++  + + + Gnc  +a++++a+l++ G+ 
      EHT98297.1  89 ESWARMHLGYEKYSGVGITNQLKRAQKFQGGNCSVHAAVASAALKSKGVD 138
                     689999999993333333344555555666****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2399.58
//
Query:       EHT98298.1  [L=43]
Description: hypothetical protein CKS_2961 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   13.1   0.0       0.12   13.1   0.0    1.0  1  IMS_C     impB/mucB/samB family C-terminal domain


Domain annotation for each model (and alignments):
>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.7e-06      0.12      73     109 ..       6      41 ..       1      43 [] 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.7e-06
       IMS_C  73 sdtreileaalkLlrrlidepglpirligvsasnlve 109
                 ++tr+i++ al+ l  l++ +g+++ +  v++s++ +
  EHT98298.1   6 VATRDIIASALRGLSTLWR-DGFRYIRADVMLSDFIS 41 
                 7899***************.**************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 331.27
//
Query:       EHT98299.1  [L=112]
Description: replication initiation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 968.94
//
Query:       EHT98300.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98300.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98300.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98300.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98300.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 919.02
//
Query:       EHT98301.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98301.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1006.21
//
Query:       EHT98302.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98302.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98302.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98302.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98302.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 817.54
//
Query:       EHT98303.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98303.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98303.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98303.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98303.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98303.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98303.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98303.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98303.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98303.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98303.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98303.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98303.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98303.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98303.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98303.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98303.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98303.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2431.50
//
Query:       EHT98304.1  [L=180]
Description: Single-stranded DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-42  144.1   1.0    1.6e-42  143.7   1.0    1.2  1  SSB       Single-strand binding protein family
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.22   11.5   0.0    1.4  1  DUF4792   Domain of unknown function (DUF4792)


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   1.0   1.8e-46   1.6e-42       1     103 [.       6     112 ..       6     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 1.8e-46
                 ECEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEE.TTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEE CS
         SSB   1 vnkvilvGrlgkdpelrqtesGnavarftlatnrrfkd.qegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrysteiva 98 
                 vnkvilvG+lg+dpe+r++++G ava++tlat+++++d q+ge++e tewhrvv+fgklaev+ eyl+kGs+vy+eG+l+trk++dq gq+ry+te+v+
  EHT98304.1   6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDkQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWQDQGGQERYTTEVVV 104
                 7************************************************************************************************** PP

                 E...EEEE CS
         SSB  99 e...evqf 103
                 +   ++q+
  EHT98304.1 105 NvggTMQM 112
                 97777776 PP

>> DUF4792  Domain of unknown function (DUF4792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.22      13      57 ..      44      89 ..      34      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
     DUF4792 13 PplsvktnwseskklsveddshkewgyyLnkGSqvnisycvks.ss 57
                +++ ++++++e + +++  +  +  g+yL kGSqv i+ + ++ ++
  EHT98304.1 44 KQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTrKW 89
                6777888899999999999999999************988886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1343.56
//
Query:       EHT98305.1  [L=942]
Description: ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-39  133.1   0.0    1.3e-38  131.4   0.0    2.0  1  UvrA_inter       UvrA interaction domain
    5.5e-36  123.3   0.0    1.2e-34  119.0   0.0    2.7  2  UvrA_DNA-bind    UvrA DNA-binding domain
    1.1e-22   81.1   0.0    1.4e-05   25.6   0.0    5.0  4  ABC_tran         ABC transporter
    1.9e-11   43.8   0.1      0.022   14.2   0.0    4.2  4  SMC_N            RecF/RecN/SMC N terminal domain
    8.4e-08   31.9   0.4     0.0013   18.5   0.1    2.9  2  AAA_29           P-loop containing region of AAA domain
    1.3e-07   32.2   0.2      0.023   15.1   0.1    3.6  3  AAA_16           AAA ATPase domain
    1.3e-05   25.2   0.1      0.049   13.5   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
    1.6e-05   25.2   2.4      0.023   15.0   0.2    3.5  3  DnaJ_CXXCXGXG    DnaJ central domain
    4.1e-05   23.9   1.4       0.92    9.8   0.0    4.0  3  AAA_22           AAA domain
    0.00025   21.6   6.7       0.42   11.1   0.1    3.3  3  AAA_23           AAA domain
    0.00055   20.5   0.0        2.7    8.6   0.0    3.0  2  AAA_18           AAA domain
     0.0011   18.6   0.3       0.31   10.6   0.0    2.8  2  AAA_25           AAA domain
     0.0016   18.6   0.0        2.8    8.1   0.0    3.1  2  AAA_33           AAA domain
     0.0025   17.4   0.5        0.2   11.2   0.1    2.5  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0042   17.0   0.1        1.5    8.7   0.0    2.9  2  APS_kinase       Adenylylsulphate kinase
     0.0045   16.9   0.0      0.014   15.3   0.0    1.8  1  DUF2083          Predicted transcriptional regulator (DUF2083
     0.0055   15.8   0.3        2.6    7.0   0.0    2.6  2  T2SSE            Type II/IV secretion system protein
     0.0059   16.4   0.0        0.4   10.4   0.0    2.5  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0064   16.4   0.0        1.1    9.1   0.0    2.4  2  NACHT            NACHT domain
     0.0083   15.9   0.1        7.3    6.3   0.0    3.4  3  AAA_30           AAA domain
     0.0085   15.4   0.0       0.94    8.7   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.011   15.5   7.2       0.68    9.7   0.0    3.9  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.019   14.3   0.0        5.3    6.3   0.0    2.4  2  ATPase           KaiC
      0.026   13.5   0.5        1.7    7.6   0.0    2.9  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.037   14.1   0.0         15    5.6   0.0    3.2  3  AAA_14           AAA domain
      0.067   13.3   0.1        3.5    7.7   0.0    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
      0.073   13.0   0.0        8.5    6.2   0.0    2.8  2  ATPase_2         ATPase domain predominantly from Archaea
      0.077   12.7   0.2        8.6    6.0   0.0    3.0  3  AAA_24           AAA domain
       0.14   12.4   0.0         18    5.6   0.0    2.6  2  AAA_28           AAA domain
       0.14   11.6   0.1         25    4.3   0.0    2.8  2  AAA_7            P-loop containing dynein motor region
       0.95    9.4   2.8        6.2    6.7   0.1    3.1  3  NTPase_1         NTPase
        3.6    7.8   9.6        3.4    7.9   0.3    3.6  3  Zn-ribbon_8      Zinc ribbon domain


Domain annotation for each model (and alignments):
>> UvrA_inter  UvrA interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   2.3e-41   1.3e-38       1     108 [.     130     237 ..     130     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 2.3e-41
  UvrA_inter   1 QsveqIvdqilkleegtkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiydldedieldknkkhsievvvDrlvvkkeersrlaesvetAlklg 99 
                 Q+v+q+vdq+l+ +eg++l++laPvv++rkge++k+lenl  +G+ r riDge+ dl++ ++l+ +kkh+ievv+Dr++v+++  +rlaes etAl+l+
  EHT98305.1 130 QTVSQMVDQVLEQPEGRRLMLLAPVVKDRKGEHTKTLENLATQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLATRLAESFETALELS 228
                 9************************************************************************************************** PP

  UvrA_inter 100 eglvivsev 108
                  g++iv+++
  EHT98305.1 229 GGTAIVADM 237
                 ******976 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.1   6.4e+02      79     107 ..      36      64 ..      23      66 .. 0.83
   2 !  119.0   0.0   2.1e-37   1.2e-34       1     110 []     290     399 ..     290     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.1
                    ......---HHHHHHHHHH-------HHH CS
  UvrA_DNA-bind  79 rsyektfeGvipnlerryreteSeavree 107
                     + +  f+ +  + +rry e+ S ++r+ 
     EHT98305.1  36 GKSSLAFDTLYAEGQRRYVESLSAYARQF 64 
                    55667788899999*************86 PP

  == domain 2  score: 119.0 bits;  conditional E-value: 2.1e-37
                    -S----.-----------GGG..TT-HHHHHHHHHHHTTTS------------S-THHHHH----....................---HHHHHHHH CS
  UvrA_DNA-bind   1 DpdlvvpdpslslaegAiapwsskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeekikveyks.ggrkrsyektfeGvipnlerr 95 
                    Dpd+vv++ +lsla gAi++w ++++ yy+q+l+++a+h+++d++ pf++L++++++++LyGsg+e+i+++y + +g ++ ++++feGv++n+err
     EHT98305.1 290 DPDRVVQNAELSLAGGAIRGW-DRRNFYYFQMLRSLADHLDFDIEAPFNSLKDSVQKVILYGSGKETIEFKYINdRGDTSVRRHPFEGVLNNMERR 384
                    9********************.999999********************************************9989999999************** PP

                    HH-------HHHHHH CS
  UvrA_DNA-bind  96 yreteSeavreelek 110
                    y+eteS avreel+k
     EHT98305.1 385 YKETESSAVREELAK 399
                    ************986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.9e-06    0.0016       1      34 [.      14      48 ..      14     233 .. 0.56
   2 !   12.5   0.0   0.00027      0.15      79     135 ..     439     515 ..     359     517 .. 0.67
   3 !   17.3   0.0   9.6e-06    0.0054       1      29 [.     623     651 ..     623     661 .. 0.96
   4 !   25.6   0.0   2.5e-08   1.4e-05      85     136 ..     806     860 ..     759     861 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.9e-06
                EEEEEEEEETTSEEEEEESTTSSHHHHH.HHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLl.kllagl 34
                lkn++l++ ++++++++G +G+GKS+L+  +l+ +
  EHT98305.1 14 LKNINLTIPRDKLIVVTGLSGSGKSSLAfDTLYAE 48
                79************************952455544 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00027
                 H...........HHHTCHHHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEEST CS
                 x...........xxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
    ABC_tran  79 n...........esdeeiekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkk..pkllllDEp 135
                             ++ + +ek+l+++g+         l+   +++s+++LSgG+ qr+ la  +       +++lDEp
  EHT98305.1 439 AmaffenlklsgQRAKIAEKVLKEIGDRLsflvnvgLNYLSMSRSAETLSGGEAQRIRLASQIGAGlvGVMYVLDEP 515
                 1555555665553333355555555554455555558888888889**************98765422467788888 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 9.6e-06
                 EEEEEEEEETTSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlk 29 
                 lk+v+l+l  g  + i+G +G+GKStL++
  EHT98305.1 623 LKDVTLTLPVGLFTCITGVSGSGKSTLIN 651
                 799************************97 PP

  == domain 4  score: 25.6 bits;  conditional E-value: 2.5e-08
                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT...SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkk...pkllllDEpt 136
                 +++ l++l +++l   ++++s+++LSgG+ qrv+lar l k+   ++l++lDEpt
  EHT98305.1 806 LARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRgtgQTLYILDEPT 860
                 5666778888889999999********************98644479*******9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0047       2.6       4      41 ..       3      41 ..       1      66 [. 0.73
   2 !    7.4   0.0    0.0046       2.6     135     211 ..     386     560 ..     132     566 .. 0.68
   3 !    9.5   0.1    0.0011      0.59      21      50 ..     631     659 ..     613     667 .. 0.78
   4 !   14.2   0.0     4e-05     0.022     134     209 ..     827     902 ..     724     909 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0047
                EEEEESETTEECEEEEEET.TSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
       SMC_N  4 rleienFksyagktvilpf.sksftaivGpNGSGKsnll 41
                ++e+++ ++ + k++ l +  +++ +++G  GSGKs+l 
  EHT98305.1  3 KIEVRGARTHNLKNINLTIpRDKLIVVTGLSGSGKSSLA 41
                677777777766666666523568999**********95 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0046
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                 +                                                                                                  
  EHT98305.1 386 Ketessavreelakfisnracascegtrlrrearhvyventtlptisdmsighamaffenlklsgqrakiaekvlkeigdrlsflvnvglnylsmsrsa 484
                 044444444444444555555555555555555555555666666666666666666666666666666666677777777777777777777777777 PP

                 .CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHH.HHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkk.vaellkeksknaQfivislreemlekadklvgv 211
                  +LSgGe + + la    i +     +y+lDe    L ++  ++ + +l++ +     +iv+ ++e+ ++ ad+++ +
  EHT98305.1 485 eTLSGGEAQRIRLASQ--IGAGLVGVMYVLDEPSIGLHQRDNERlLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDI 560
                 7899999876666655..555556789**********998665516677787777899***************99876 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0011
                 ETTSSEEEEEESTTSSHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  21 pfsksftaivGpNGSGKsnlldAilFvLGe 50 
                 p+   ft+i+G  GSGKs l++  lF + +
  EHT98305.1 631 PVG-LFTCITGVSGSGKSTLINDTLFPIAQ 659
                 444.49**************9988887765 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 4e-05
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklv 209
                  ++LSgGe + v la  ++  +   + ly+lDe    L ++ ++++ e+l++ +++   ++vi ++ ++++ ad +v
  EHT98305.1 827 ATTLSGGEAQRVKLARELSK-RGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQgNTIVVIEHNLDVVKTADWIV 902
                 348************99875.566789***************************99455667889999999998776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00072       0.4      18      38 ..      20      40 ..      11      53 .. 0.79
   2 !   18.5   0.1   2.3e-06    0.0013      22      56 ..     632     664 ..     621     669 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00072
      AAA_29 18 eidlkgatlltGpsGsGKSTl 38
                +i ++  +++tG sGsGKS+l
  EHT98305.1 20 TIPRDKLIVVTGLSGSGKSSL 40
                555555899**********98 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.3e-06
      AAA_29  22 kg.atlltGpsGsGKSTllDAiqalLvpakkvrfNk 56 
                  g +t +tG sGsGKSTl+   +  L p  +++ N 
  EHT98305.1 632 VGlFTCITGVSGSGKSTLI---NDTLFPIAQRALNG 664
                 45689*************9...44455555566665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.2e-05     0.023      24      63 ..      24      64 ..       7     234 .. 0.85
   2 !   12.5   0.0   0.00026      0.15      26      51 ..     635     660 ..     622     692 .. 0.78
   3 ?   -0.7   0.0       2.9   1.6e+03     137     169 ..     852     886 ..     752     888 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.2e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekdggif..lrgkcdql 63
                  l++++G sG+GKssl+   l ++e+++ ++  l++ ++q+
  EHT98305.1 24 DKLIVVTGLSGSGKSSLAFDTL-YAEGQRRYVesLSAYARQF 64
                3799**************5555.4566656666688888887 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00026
      AAA_16  26 lvllsGesGvGKsslvrellralekd 51 
                  + ++G sG+GKs+l++  l ++ ++
  EHT98305.1 635 FTCITGVSGSGKSTLINDTLFPIAQR 660
                 5679************7766677776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.9
      AAA_16 137 lvlvlD....dlqwadeaslqllaaLlrlleskpllv 169
                 ++ +lD     l+ a  + +qll+ L +l+++++ +v
  EHT98305.1 852 TLYILDepttGLHFA--DIQQLLEVLHQLRDQGNTIV 886
                 455555332223322..23555666666666654443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0024       1.3      87     116 ..      11      41 ..       2      60 .. 0.76
   2 !   13.5   0.0   8.8e-05     0.049      78     118 ..     611     652 ..     594     666 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0024
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLi 116
                  +++l++++  +   k++v+ G SG GKS+L 
   EHT98305.1  11 THNLKNINLTIPRdKLIVVTGLSGSGKSSLA 41 
                  456667766665559**************95 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 8.8e-05
                  EEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHH CS
  RsgA_GTPase  78 evllvsaktkegleelkellkd.ktsvlvGqSGvGKStLina 118
                  +vl++   ++++l++++  l    ++++ G SG GKStLin 
   EHT98305.1 611 KVLKITGARGNNLKDVTLTLPVgLFTCITGVSGSGKSTLIND 652
                  56777777788888888888765889***************6 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.057        32      15      27 ..     275     287 ..     248     300 .. 0.70
   2 ?    2.7   0.0       0.3   1.7e+02      14      24 ..     403     413 ..     388     429 .. 0.64
   3 !   15.0   0.2   4.2e-05     0.023      16      51 ..     739     770 ..     727     776 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.057
  DnaJ_CXXCXGXG  15 ktCktCkGsGvvr 27 
                      C+tC+G Gv++
     EHT98305.1 275 GACPTCDGLGVQQ 287
                    4688888888433 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.3
  DnaJ_CXXCXGXG  14 kktCktCkGsG 24 
                    ++ C +C+G+ 
     EHT98305.1 403 NRACASCEGTR 413
                    33455555554 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 4.2e-05
  DnaJ_CXXCXGXG  16 tCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtG 51 
                    +C++C+G Gv ++e++    f   +  +C++C+G+ 
     EHT98305.1 739 RCEACQGDGVLKVEMH----FLPDIYVPCDQCKGKR 770
                    6********7666553....4456679*******86 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0017      0.92       5      37 ..      24      56 ..      22     151 .. 0.76
   2 !    9.3   0.1    0.0023       1.3       7      23 ..     635     651 ..     632     660 .. 0.90
   3 ?    0.2   0.1       1.5   8.5e+02      80     122 ..     838     883 ..     788     896 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0017
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee 37
                ++++vvtG sG+GK+ l+   l+   ++ + e 
  EHT98305.1 24 DKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVES 56
                579*************99777666666665555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0023
      AAA_22   7 ilvvtGesGtGKTtllr 23 
                 ++++tG sG+GK+tl++
  EHT98305.1 635 FTCITGVSGSGKSTLIN 651
                 899***********987 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.5
      AAA_22  80 ealeqalrarav.ielliiDEaqh.lrs....eealeeLrsllnlsrkg 122
                  +l++ l++r++ + l i+DE    l +    +++le L++l +  + +
  EHT98305.1 838 VKLARELSKRGTgQTLYILDEPTTgL-HfadiQQLLEVLHQLRD--QGN 883
                 56777788888889999999988878.44445555555555544..332 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00075      0.42       1      35 [.       3      40 ..       3      42 .. 0.93
   2 ?    1.2   0.0      0.82   4.6e+02      69     124 ..     350     404 ..     322     469 .. 0.75
   3 !   10.8   0.8   0.00092      0.51      21      37 ..     635     651 ..     615     652 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00075
      AAA_23  1 kLkienfrsfrdqeidF...skgltlItGpNGaGKTTi 35
                k+++++ r ++ ++i++    ++l ++tG  G+GK+++
  EHT98305.1  3 KIEVRGARTHNLKNINLtipRDKLIVVTGLSGSGKSSL 40
                68999999**999999999999**************98 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.82
      AAA_23  69 gkvkayveltfenkdgrytrsier.erelskkkgkttkkaklelleideleqfisel 124
                 g++k+ +e+++ n++g  ++s++r  +e   +++++++k+++++   +el +fis+ 
  EHT98305.1 350 GSGKETIEFKYINDRG--DTSVRRhPFEGVLNNMERRYKETESSAVREELAKFISNR 404
                 5666667776666666..578888445566688899999999999999999999984 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00092
      AAA_23  21 ltlItGpNGaGKTTild 37 
                 +t+ItG  G+GK+T+++
  EHT98305.1 635 FTCITGVSGSGKSTLIN 651
                 68*************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0052       2.9       1      15 [.      27      41 ..      27      64 .. 0.92
   2 !    8.6   0.0    0.0048       2.7       2      15 ..     637     650 ..     637     661 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
      AAA_18  1 IlltGtpGvGKttla 15
                I++tG +G+GK++la
  EHT98305.1 27 IVVTGLSGSGKSSLA 41
                99***********98 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0048
      AAA_18   2 lltGtpGvGKttla 15 
                 ++tG++G+GK+tl 
  EHT98305.1 637 CITGVSGSGKSTLI 650
                 79**********97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00056      0.31      26      54 ..      17      45 ..       5      50 .. 0.86
   2 ?    4.8   0.0     0.032        18      30      59 ..     630     659 ..     624     675 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00056
      AAA_25 26 vkgllpagelallaGapgtGKttlaldla 54
                +   +p+++l++++G +g+GK+ la d  
  EHT98305.1 17 INLTIPRDKLIVVTGLSGSGKSSLAFDTL 45
                56679********************9876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.032
      AAA_25  30 lpagelallaGapgtGKttlaldlalavat 59 
                 lp g ++ ++G +g+GK+tl  d  + +a+
  EHT98305.1 630 LPVGLFTCITGVSGSGKSTLINDTLFPIAQ 659
                 67788999************9998888875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0049       2.8       1      18 [.      26      43 ..      26     101 .. 0.87
   2 ?    6.9   0.0     0.012       6.7       5      19 ..     639     653 ..     636     704 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
      AAA_33  1 lvllvGlpGsGKstlaer 18
                l+++ Gl+GsGKs la  
  EHT98305.1 26 LIVVTGLSGSGKSSLAFD 43
                7999*********99855 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
      AAA_33   5 vGlpGsGKstlaerl 19 
                  G++GsGKstl+   
  EHT98305.1 639 TGVSGSGKSTLINDT 653
                 7**********8765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.065        36       3      23 ..      27      47 ..      25      54 .. 0.78
   2 !   11.2   0.1   0.00036       0.2       3      22 ..     636     658 ..     634     668 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.065
                EEEEESTTCCHHHHHHHHHCT CS
        cobW  3 tvltGflGsGKTtLlnhllen 23
                +v+tG  GsGK++L   +l  
  EHT98305.1 27 IVVTGLSGSGKSSLAFDTLYA 47
                89***********98777744 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00036
                 EEEEESTTCCHHHHHHHHH...C CS
        cobW   3 tvltGflGsGKTtLlnhll...e 22 
                 t +tG  GsGK+tL+n +l   +
  EHT98305.1 636 TCITGVSGSGKSTLINDTLfpiA 658
                 89**************9996653 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0027       1.5       4      21 ..      26      43 ..      23      57 .. 0.80
   2 ?    5.1   0.0     0.034        19       5      20 ..     636     651 ..     632     663 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0027
                EEEEESSTTSSHHHHHHH CS
  APS_kinase  4 vvwltGlsgsGKstiana 21
                 + +tGlsgsGKs++a+ 
  EHT98305.1 26 LIVVTGLSGSGKSSLAFD 43
                6899***********974 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.034
                 EEEESSTTSSHHHHHH CS
  APS_kinase   5 vwltGlsgsGKstian 20 
                   +tG+sgsGKst+ n
  EHT98305.1 636 TCITGVSGSGKSTLIN 651
                 569**********965 PP

>> DUF2083  Predicted transcriptional regulator (DUF2083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.4e-05     0.014      21      90 ..      99     169 ..      96     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-05
     DUF2083  21 Gniskrasatgfqfarfgg.aCPlwnvheafetpgrilvqlaelpdgeryltiartvekesgafgepekrf 90 
                 G i+  ++  ++ far+g  +CP  +v  a +t ++++ q++e p+g+r + +a  v++++g+++++ +++
  EHT98305.1  99 GTITEIHDYLRLLFARVGEpRCPDHDVPLAAQTVSQMVDQVLEQPEGRRLMLLAPVVKDRKGEHTKTLENL 169
                 667777777788999999758**************************************999988876665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0047       2.6     120     147 ..      15      42 ..       1      52 [. 0.75
   2 !    6.0   0.1    0.0095       5.3     133     163 ..     637     667 ..     611     678 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0047
       T2SSE 120 evlrkavrerglilvsGgTgsGKttlly 147
                 + ++  + + +li+v+G  gsGK+ l+ 
  EHT98305.1  15 KNINLTIPRDKLIVVTGLSGSGKSSLAF 42 
                 4467778899**************8874 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0095
       T2SSE 133 lvsGgTgsGKttllyallkeinksderivtv 163
                  ++G  gsGK+tl++  l  i+++  +  t+
  EHT98305.1 637 CITGVSGSGKSTLINDTLFPIAQRALNGATI 667
                 69*************9998888876655555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.1        57       1      19 [.      27      45 ..      27      84 .. 0.76
   2 !   10.4   0.0   0.00071       0.4       2      21 ..     637     656 ..     636     679 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
  Viral_helicase1  1 ivvhGvpGcGKStlirkll 19
                     ivv G  G+GKS+l  + l
       EHT98305.1 27 IVVTGLSGSGKSSLAFDTL 45
                     79**********9866555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00071
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                       + Gv G+GKStli + l +
       EHT98305.1 637 CITGVSGSGKSTLINDTLFP 656
                      589***********998855 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.04        22       2      18 ..      26      42 ..      25     112 .. 0.72
   2 !    9.1   0.0     0.002       1.1       3      31 ..     636     664 ..     634     670 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.04
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                l++++G +GsGK+ L+ 
  EHT98305.1 26 LIVVTGLSGSGKSSLAF 42
                799***********984 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.002
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpq 31 
                  +++G +GsGK+tL+    + +a++ l++
  EHT98305.1 636 TCITGVSGSGKSTLINDTLFPIAQRALNG 664
                 689************99999999988876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.14        80      17      34 ..      23      40 ..      17      64 .. 0.86
   2 ?    6.3   0.0     0.013       7.3      20      38 ..     635     653 ..     627     678 .. 0.79
   3 ?    2.1   0.0      0.24   1.3e+02      84     121 ..     846     887 ..     804     891 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.14
      AAA_30 17 gdrvavltGpAGtGKtta 34
                +d++ v+tG  G+GK+ +
  EHT98305.1 23 RDKLIVVTGLSGSGKSSL 40
                57799**********976 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
      AAA_30  20 vavltGpAGtGKttalkal 38 
                 ++++tG+ G+GK+t+++  
  EHT98305.1 635 FTCITGVSGSGKSTLINDT 653
                 789************9865 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.24
      AAA_30  84 arlepgtllivDEagmv....dtkqlaallkaaekagakvil 121
                 +r + +tl+i DE        d++ql ++l +++++g ++++
  EHT98305.1 846 KRGTGQTLYILDEPTTGlhfaDIQQLLEVLHQLRDQGNTIVV 887
                 233456*******76533355999999999999999988876 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0017      0.94       2      25 ..      25      48 ..      24     106 .. 0.79
   2 ?    4.3   0.0     0.036        20       5      27 ..     637     659 ..     635     670 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0017
     DUF2075  2 avvlVtGvaGtGKtvvllnllael 25
                ++++VtG +G+GK+ +++  l++ 
  EHT98305.1 25 KLIVVTGLSGSGKSSLAFDTLYAE 48
                689****************99987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
     DUF2075   5 lVtGvaGtGKtvvllnllaeled 27 
                  +tGv+G+GK+ + +  l+ + +
  EHT98305.1 637 CITGVSGSGKSTLINDTLFPIAQ 659
                 59**********99998887744 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.65   3.6e+02       2      15 ..      27      40 ..      26      45 .. 0.92
   2 ?   -0.3   0.0       1.4   7.6e+02     260     282 ..     509     531 ..     481     547 .. 0.71
   3 ?    5.6   0.3     0.021        12       1      16 [.     635     650 ..     635     655 .. 0.94
   4 ?    9.7   0.0    0.0012      0.68     255     295 ..     844     888 ..     826     896 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.65
      AAA_21  2 nvliGpNgsGKSnL 15
                 v++G  gsGKS+L
  EHT98305.1 27 IVVTGLSGSGKSSL 40
                799*********98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
      AAA_21 260 llliDEpEngLHPkllrrllell 282
                  +++DEp  gLH +  +rll+ l
  EHT98305.1 509 MYVLDEPSIGLHQRDNERLLGTL 531
                 579*********95444444444 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.021
      AAA_21   1 lnvliGpNgsGKSnLL 16 
                 +++++G  gsGKS+L+
  EHT98305.1 635 FTCITGVSGSGKSTLI 650
                 79*************8 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.0012
      AAA_21 255 lkkg....sllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                 l+k+    +l+++DEp +gLH + +  lle+l +l++ g  +++ 
  EHT98305.1 844 LSKRgtgqTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVI 888
                 444456679*************99999999998888777777765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0095       5.3      16      41 ..      21      46 ..      13      56 .. 0.85
   2 ?    5.3   0.0     0.019        11      16      38 ..     630     652 ..     622     677 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0095
      ATPase 16 ipegrvvlitGepGtGKtifalqFli 41
                ip+++ + +tG +G+GK+ +a   l+
  EHT98305.1 21 IPRDKLIVVTGLSGSGKSSLAFDTLY 46
                8*****************99876665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
      ATPase  16 ipegrvvlitGepGtGKtifalq 38 
                 +p g  + itG++G+GK+++   
  EHT98305.1 630 LPVGLFTCITGVSGSGKSTLIND 652
                 67888999**********98765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14        80      19      46 ..      14      41 ..       4      54 .. 0.77
   2 ?   -0.7   0.0         1   5.7e+02      62      80 ..     557     575 ..     545     591 .. 0.83
   3 ?    7.6   0.0     0.003       1.7      33      64 ..     637     668 ..     629     674 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
                HHHHGGG-S-SEEEEEEE-TTSSHHHHH CS
        MeaB 19 lerllakaGraqvvGltGvPGaGkstlv 46
                l+++  +  r + + +tG+ G+Gks l 
  EHT98305.1 14 LKNINLTIPRDKLIVVTGLSGSGKSSLA 41
                566666777889999**********874 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1
                 EEEE--------------- CS
        MeaB  62 vlavDPsspftGGsilGDk 80 
                 v+ + P++ ++GG+i+ + 
  EHT98305.1 557 VIDIGPGAGVHGGAIVAEG 575
                 8999***********9765 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.003
                 EEEE-TTSSHHHHHHHHHHHHHCTT--EEEEE CS
        MeaB  33 GltGvPGaGkstlvealglelrrrGkrvavla 64 
                  +tGv G+Gkstl++     +++r    a +a
  EHT98305.1 637 CITGVSGSGKSTLINDTLFPIAQRALNGATIA 668
                 58************998888887776666665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.027        15       2      27 ..      24      49 ..      23      88 .. 0.84
   2 ?    4.3   0.0     0.068        38       5      22 ..     636     653 ..     633     663 .. 0.87
   3 ?   -1.5   0.0       4.3   2.4e+03      54      90 ..     842     882 ..     803     889 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.027
      AAA_14  2 rkilvitGaRrvGKTtllkqlikell 27
                +k++v+tG+  +GK+ l+++ ++ + 
  EHT98305.1 24 DKLIVVTGLSGSGKSSLAFDTLYAEG 49
                5899**************99887655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.068
      AAA_14   5 lvitGaRrvGKTtllkql 22 
                  +itG+  +GK+tl+++ 
  EHT98305.1 636 TCITGVSGSGKSTLINDT 653
                 68************9875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.3
      AAA_14  54 elileklkeekktylflDEiqev......pewekalkslvdeg 90 
                 +++ ++  + ++t+ +lDE          +++ ++l +l d+g
  EHT98305.1 842 RELSKR--GTGQTLYILDEPTTGlhfadiQQLLEVLHQLRDQG 882
                 333332..25788889998655433433355666666666655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.26   1.5e+02       2      15 ..      27      40 ..      26      55 .. 0.90
   2 ?    7.7   0.0    0.0062       3.5       3      18 ..     637     652 ..     635     669 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.26
                EEEEESTTSSHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStL 15
                +++ G + +GKS+L
  EHT98305.1 27 IVVTGLSGSGKSSL 40
                7899*********9 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0062
                 EEEESTTSSHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLina 18 
                 +i G + +GKStLin 
  EHT98305.1 637 CITGVSGSGKSTLIND 652
                 799************6 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.015       8.5       4      41 ..      10      45 ..       9     117 .. 0.72
   2 ?    3.4   0.0      0.11        61      22      39 ..     635     652 ..     621     657 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.015
    ATPase_2  4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeii 41
                R   lk+++  + r  ++ ++++G  gsGK++L    +
  EHT98305.1 10 RTHNLKNINLTIPR--DKLIVVTGLSGSGKSSLAFDTL 45
                66778888877777..899*************976554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
    ATPase_2  22 iyfiYGpegsGKtaLlke 39 
                 +  i+G  gsGK++L++ 
  EHT98305.1 635 FTCITGVSGSGKSTLIND 652
                 6789************86 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.12        64       5      20 ..      27      42 ..      23      51 .. 0.87
   2 ?   -2.3   0.0       5.3     3e+03     112     132 ..     528     548 ..     520     550 .. 0.74
   3 ?    6.0   0.0     0.015       8.6       5      21 ..     636     652 ..     633     686 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.12
      AAA_24  5 iliyGpsgiGKTtlak 20
                i+++G sg+GK++la 
  EHT98305.1 27 IVVTGLSGSGKSSLAF 42
                89***********996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.3
      AAA_24 112 rrllkklqelrknvifiahek 132
                   +l +l++l+++vi++ h +
  EHT98305.1 528 LGTLIHLRDLGNTVIVVEHDE 548
                 455667888888***999965 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.015
      AAA_24   5 iliyGpsgiGKTtlake 21 
                  +i+G sg+GK+tl++ 
  EHT98305.1 636 TCITGVSGSGKSTLIND 652
                 59************976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.094        53       2      35 ..      27      65 ..      26      90 .. 0.67
   2 ?    5.6   0.0     0.031        18       3      17 ..     637     651 ..     635     677 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.094
      AAA_28  2 ivitGgestGKTtll.eaLaargyp.vv...pEaareil 35
                iv+tG +++GK++l+   L a+g + +v     +ar++l
  EHT98305.1 27 IVVTGLSGSGKSSLAfDTLYAEGQRrYVeslSAYARQFL 65
                9*************9666766532212222255555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
      AAA_28   3 vitGgestGKTtlle 17 
                 +itG +++GK+tl++
  EHT98305.1 637 CITGVSGSGKSTLIN 651
                 8************97 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.045        25      26      60 ..      17      51 ..       5      64 .. 0.81
   2 ?    4.0   0.1     0.055        31      36      55 ..     636     655 ..     626     668 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.045
       AAA_7 26 lelllknkkpvllvGptGtGKtviikdllkkldke 60
                ++l + ++k ++++G +G+GK++++ d+l +  ++
  EHT98305.1 17 INLTIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQR 51
                5677889999*************999966555444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.055
       AAA_7  36 vllvGptGtGKtviikdllk 55 
                 ++++G +G+GK+++i+d+l 
  EHT98305.1 636 TCITGVSGSGKSTLINDTLF 655
                 5789************9764 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.74   4.1e+02       2      16 ..      27      41 ..      26      48 .. 0.87
   2 ?    6.7   0.1     0.011       6.2       3      20 ..     637     654 ..     636     667 .. 0.84
   3 ?   -1.3   0.0       3.1   1.7e+03      41     103 ..     794     858 ..     774     898 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.74
                EEEE--TTSSHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlv 16
                +++TG +G+GK+ l 
  EHT98305.1 27 IVVTGLSGSGKSSLA 41
                79**********986 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.011
                 EEE--TTSSHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvl 20 
                 +iTG +G+GK+Tl++  l
  EHT98305.1 637 CITGVSGSGKSTLINDTL 654
                 69************9765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.1
                 -----EEEEEET.T--EEEEEETT---SSEETTEEE-HHHHHHHHHHHHHHHH...HHH-EEEE-- CS
    NTPase_1  41 ggrrigFkivdlasgeegiLarveakreprvgkyvvdvesfeelalealrkal...seadviviDE 103
                 ++ r  F+ v     + ++L  v+  + +r+g+   ++   e   ++  r+     +++ ++++DE
  EHT98305.1 794 EEAREFFDAVPALARKLQTLMDVG-LSYIRLGQSATTLSGGEAQRVKLARELSkrgTGQTLYILDE 858
                 566777777777777777777777.78888888888887755555554444332114444888887 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3     0.006       3.4       6      37 ..     251     286 ..     250     289 .. 0.72
   2 ?    1.5   0.1      0.59   3.3e+02      16      38 ..     395     416 ..     388     417 .. 0.75
   3 ?    2.1   0.6      0.39   2.2e+02       7      36 ..     739     771 ..     739     774 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.006
  Zn-ribbon_8   6 YrCeeCghefe....vlqsis.dapltaCPeCgs.evr 37 
                  + C  Cg        +l  +s  +p  aCP+C +  v+
   EHT98305.1 251 FACPVCGYSMSelepRL--FSfNNPAGACPTCDGlGVQ 286
                  8899***9888665433..344678888****986666 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.59
  Zn-ribbon_8  16 evlqsisdapltaCPeCgs.evrr 38 
                  e+l+++   ++ aC +C + ++rr
   EHT98305.1 395 EELAKFI--SNRACASCEGtRLRR 416
                  5555555..2567******99998 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.39
  Zn-ribbon_8   7 rCeeCghefevlqsis.daplta.CPeCgs.ev 36 
                  rCe+C+ +    ++++  ++  + C +C++ + 
   EHT98305.1 739 RCEACQGDGVLKVEMHfLPDIYVpCDQCKGkRY 771
                  799999999988889966777778*99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 6481.39
//
Query:       EHT98306.1  [L=354]
Description: Zn-dependent NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-26   92.2   3.6    3.4e-26   91.3   3.6    1.5  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.1e-21   77.2   0.0    1.9e-21   76.4   0.0    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    9.5e-06   25.1   0.1    1.6e-05   24.3   0.1    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    1.5e-05   24.4   0.0    2.5e-05   23.7   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00064   20.8   0.0     0.0011   20.0   0.0    1.4  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0019   18.4   0.1     0.0034   17.6   0.1    1.4  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
  ------ inclusion threshold ------
       0.03   15.0   0.5       0.21   12.3   0.0    2.4  3  Methyltransf_25  Methyltransferase domain
       0.05   14.3   0.0       0.15   12.8   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
      0.058   12.1   0.0      0.087   11.5   0.0    1.2  1  Oxidored_nitro   Nitrogenase component 1 type Oxidoreductase
      0.075   12.9   0.1       0.12   12.3   0.1    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   3.6   1.9e-29   3.4e-26       2     108 ..      29     144 ..      28     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1.9e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTS......... CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvs......... 90 
                 ++v ++v  +g+C+sDlh +++ ++ ++ +p+++GHEivG v +vgpe++k+kvGd V v +++  c +C++C+eg e++Ce++ + +++         
  EHT98306.1  29 HDVQLDVLFCGVCHSDLHQARN-EWKNTIFPVVPGHEIVGRVTAVGPETQKYKVGDLVGVGCMVDsCRSCPSCQEGLEQYCENGFVGTYNgqdrqtgai 126
                 799******************9.8************************************999988***************665544444666666676 PP

                 S-SSSBSEEEECGGGEEE CS
       ADH_N  91 ldGgfaeyvvvpekklvk 108
                 + Gg+++ +vv+e+++++
  EHT98306.1 127 TYGGYSTSMVVDESFVLR 144
                 9************99986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.1e-24   1.9e-21       1     127 [.     186     307 ..     186     310 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.1e-24
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 g+G+++v++A+a+Ga+v+    s++k+e  k+lGadev+ +k+   +++ + +   + +d+++++v++++ l+  ++llk++G +++vG+++++ +  +
  EHT98306.1 186 GLGHMGVKIAHAMGAHVVLFTTSPSKIEDGKRLGADEVVISKD--ADQMAQ-HA--NSFDFILNTVAAQHDLNPFITLLKRDGNMTLVGAPEHDHPaPQ 279
                 89***************************************44..555555.55..49********************************888888799 PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdl 127
                 ++nl++k++si Gsl g+   e +e+ld+
  EHT98306.1 280 VFNLIFKRRSIAGSLIGG-IAETQEMLDF 307
                 9*****************.8999999998 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   8.8e-09   1.6e-05      30     101 ..     178     248 ..     171     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.8e-09
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---B CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvli 101
                  kv ++G G  G   +++a+++ga+V+++ ++p+++e  + lga    v++++++++a+++++ d +  tv+ 
   EHT98306.1 178 KVGIVGLGGLGHMGVKIAHAMGAHVVLFTTSPSKIEDGKRLGAD-EVVISKDADQMAQHANSFDFILNTVAA 248
                  799*****************************************.5678999***************99975 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.4e-08   2.5e-05      36      81 ..     176     222 ..     167     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.4e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC.E CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv.e 81 
                   gk+vGi+GlG +G+   k+++a+g++v+ + +s++k e+ ++lg+ e
    EHT98306.1 176 GKKVGIVGLGGLGHMGVKIAHAMGAHVVLFTTSPSKIEDGKRLGAdE 222
                   89********************************9988444444422 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.3e-07    0.0011       1     122 [.     218     332 ..     218     338 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.3e-07
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   lGAdev+ ++ ++++++++  +++D +l+tv+ ++ l   +++l+  G +  +g+p   +  +++ ++   +++++     +  +  a+  +e++++
    EHT98306.1 218 LGADEVVISKdADQMAQHA--NSFDFILNTVAAQHDLNPFITLLKRDGNMTLVGAP-EHDHPAPQVFNLIFKRRSIAGS--LIGG-IAE-TQEMLDF 307
                   8******777688997665..78*********665559999999555999888864.3333333333333332222222..3455.666.9999999 PP

                   HHHHH----EEEEEEGGGHHHHHHHH CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhryl 122
                   + ++ ++  ++    +++++eA++++
    EHT98306.1 308 CGKHGITSDIE-LIAMDQINEAYERM 332
                   99999999997.79999999999988 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.9e-06    0.0034       2      74 ..     179     257 ..     178     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.9e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT...EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg...akaaesieelvasl...dvvitmvkagkavdevie 74 
                    +g++GlG +G+  ++   + g +v+++  +++k+e+    g   +++ +++ ++++++   d+++  v a+++ + +i+
     EHT98306.1 179 VGIVGLGGLGHMGVKIAHAMGAHVVLFTTSPSKIEDGKRLGadeVVISKDADQMAQHAnsfDFILNTVAAQHDLNPFIT 257
                    788888877766666667889*************998888777755555555555555555*********999887765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.1     2e+03      54      76 ..      22      43 ..       3      57 .. 0.61
   2 ?   12.3   0.0   0.00012      0.21       7      76 ..     186     250 ..     182     261 .. 0.86
   3 ?   -2.5   0.0         5   8.9e+03      26      43 ..     314     331 ..     299     348 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
                     BCCGBSSSTTTEEEEEEESTGGG CS
  Methyltransf_25 54 daedlpfedgsfDlvvssgalhh 76
                     + ++l  +d + D+ ++ g+ h 
       EHT98306.1 22 KPRELRAHDVQLDVLFC-GVCHS 43
                     44788889999999999.44342 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00012
                      TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGG CS
  Methyltransf_25   7 GtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhh 76 
                      G G++  ++a+++g a+v+ +  s++ +e  ++  ++e     ++ +da+++ ++++sfD+++ + a +h
       EHT98306.1 186 GLGHMGVKIAHAMG-AHVVLFTTSPSKIEDGKRLGADE----VVISKDADQMAQHANSFDFILNTVAAQH 250
                      67999999**9998.*****************999655....7999****************99655555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5
                      EEESSHHHHHHHHHHHHH CS
  Methyltransf_25  26 gvDiseemleaareraee 43 
                        Di   ++++++e +e+
       EHT98306.1 314 TSDIELIAMDQINEAYER 331
                      444444444444444432 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.1e-05      0.15       7      73 ..     187     250 ..     182     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.1e-05
                      TSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC CS
  Methyltransf_11   7 tGrlaeala.krgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhh 73 
                       G +  ++a   ga+vv + +s+  ++  k+ + +e     ++  da ++    nsfD+++ + + +h
       EHT98306.1 187 LGHMGVKIAhAMGAHVVLFTTSPSKIEDGKRLGADEV----VISKDADQMAQHANSFDFILNTVAAQH 250
                      4555555553566****************99999997....499*****************9999887 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.9e-05     0.087     272     345 ..     176     241 ..     164     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.9e-05
                     T-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SE CS
  Oxidored_nitro 272 gkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdl 345
                     gk+v i+g + + +  +++ + +G++vv+  t+ ++ +d +rl a      +ev++ +d +++++ ++  + d+
      EHT98306.1 176 GKKVGIVGLGGLGHMGVKIAHAMGAHVVLFTTSPSKIEDGKRLGA------DEVVISKDADQMAQHAN--SFDF 241
                     9**********************************9999999998......6999999*****99654..4555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.6e-05      0.12       1      73 [.     178     252 ..     178     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.6e-05
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH..HHHCCTTTTSS-HHHHCCCHHCEEEES-H CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiek..sleklvekgklkeeeveaalarisfttdl 73 
                 kv+++G G +G+   +++ + g +Vvl+ +s++++e++++  ++   ++k + + + ++++++ +l+++ ++ dl
  EHT98306.1 178 KVGIVGLGGLGHMGVKIAHAMGAHVVLFTTSPSKIEDGKRLGADevVISKDADQMAQHANSFDFILNTVAAQHDL 252
                 699999999999888888899****************99887773344555555555567777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 2315.41
//
Query:       EHT98307.1  [L=107]
Description: uncharacterized DUF419 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   57.5   0.0    1.7e-15   57.3   0.0    1.0  1  YjbR      YjbR


Domain annotation for each model (and alignments):
>> YjbR  YjbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   9.5e-20   1.7e-15       2      85 ..      12     101 ..      11     102 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 9.5e-20
                 TSTTEEEEECTTS-.EEEECCCEEEEEEECCCCG..EEEES-HHHHHHHHHSSTTEEE-TS..TTTEEEEETTS.S-HHHHHHHHHHHHH CS
        YjbR   2 slpgatedfpfgpe.lvfkvggKmFallgleees..lnlkcdpeeaeaLreqypaiapgyh..kkhWitvlldg.vpddeleelideSYr 85 
                 s+pga+++++ +++ + +k +g  Fa++++++++  ++lk +p  ae +r+++++++p  h  k hW+t+ ldg ++d ++  l+d+S++
  EHT98307.1  12 SKPGAEQSVHSDWKaTQIKSNGVLFAMVHEVKGRpaVSLKSSPALAELMRDEHSDVFPSEHlnKSHWNTLFLDGtLKDSQIYYLVDASFQ 101
                 89*******998777999*9************9899**************************999***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 762.39
//
Query:       EHT98308.1  [L=138]
Description: uncharacterized UPF0047 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-34  118.8   0.0    1.4e-34  118.7   0.0    1.0  1  UPF0047   Uncharacterised protein family UPF0047


Domain annotation for each model (and alignments):
>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   7.9e-39   1.4e-34       2     114 ..      19     134 ..      18     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 7.9e-39
                 -HHHHHHHHHH.HT.SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHSTTT.T-GGGTTS..THHHHHHHHHH-SEEEEEEETTEE---TTEEE CS
     UPF0047   2 iteeveeavke.sgvkeGlvlvfsrhttasltinEnadpdvqeDleealeklvpee.eYrhnaegpdnadaHlkssllgssltipvedgklalGtwqsi 98 
                 +tee+ +++   +++++Gl++++++ht+aslt+nEn+dp+v++D+e+++ + vpe  +Y+h++eg+d+++aH+kss lg sl++pv+ g+l+lGtwq+i
  EHT98308.1  19 VTEEIVQQLPAlRDIHTGLLHLLLQHTSASLTLNENCDPTVRSDMEQHFMRHVPEAaPYQHDYEGRDDMPAHIKSSTLGVSLMLPVQRGQLVLGTWQGI 117
                 6888777776669************************************************************************************** PP

                 EEEESS.-SSEEEEEEE CS
     UPF0047  99 ylveld.gpreRkvvvq 114
                 +l e+  +   R++v++
  EHT98308.1 118 WLGEHRiHCGARRIVAT 134
                 *****644455888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1148.22
//
Query:       EHT98309.1  [L=111]
Description: hypothetical protein CKS_4649 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   14.8   0.0       0.05   13.5   0.0    1.7  1  FlgD_ig   FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-06      0.05      22      67 ..       4      47 ..       2      51 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-06
                SEEEEEEEE-SS--EEEEEEEEESSSEEEEEEE-SB-TTS-B--SE CS
     FlgD_ig 22 adevtvtikDasGevVrtidlgaqsaGvvsftWdGtdndGnkladG 67
                + +vt++++D++Ge+++ +d  a++ G  +      ++dG ++  G
  EHT98309.1  4 SGSVTIEVYDKNGEEIEVLDIRASEFGLEESGTR--NYDGDRAYRG 47
                579**************99999998887665433..5555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 972.20
//
Query:       EHT98310.1  [L=85]
Description: hypothetical protein CKS_4650 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 688.00
//
Query:       EHT98311.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-44  151.2   0.0    3.1e-44  149.9   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   3.4e-48   3.1e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.4e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHT98311.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHT98311.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHT98311.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHT98311.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHT98311.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHT98311.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2463.29
//
Query:       EHT98312.1  [L=356]
Description: periplasmic binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-28   98.7   0.3    4.6e-28   98.4   0.3    1.1  1  Peripla_BP_2  Periplasmic binding protein
  ------ inclusion threshold ------
      0.026   14.0   0.2        2.7    7.4   0.0    2.3  2  KdpD          Osmosensitive K+ channel His kinase sensor doma


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.3   5.2e-32   4.6e-28       1     237 [.      44     297 ..      44     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 5.2e-32
                   EEE-SHHHHHHHHHTT-GGGEEEB.-GGG--GGGGGGT......TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----T CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgv.dtttsdpldadklee....aivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessn 92 
                   +++l   +  +l+ l atdk+vg+ ++++    d ++ +     +++ +g  + +d+Ekl+al+P +v++ ++  + + ++++ ++gip+++   + 
    EHT98312.1  44 VVVLQHQTLNLLVQLNATDKIVGIlANWKQQLGDNYATLVpeltHKAMLGDLTHVDLEKLIALHPQVVFVTNYA-PKEMIDQISALGIPVLAISLRH 139
                   7999999999************9733333333333433336799******************************.9999************998887 PP

                   TS...................HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT...-EEEEEEEETTE..EEEE-TTSTTTHHHHTS- CS
  Peripla_BP_2  93 tg...................eslkeqiralgellgledeaeklvaeidsklaaaksaidse..kpkpvlvfggadeggyvvagsnsyigdlldalg 168
                                         ++ke i+ +ge+++++++a++l++       ++ +++  +  +++  +++++      +  g + y g ++  +g
    EHT98312.1 140 DDagqqgeinpsmqnedkaydLGIKEGITLIGEVVNRQQQAKALISAAFAGRKEVTDRLHDLpeQQRVRAYMANPSL---TTYGAGKYTGLMMTHAG 233
                   667899****************************************9999999999999999644555555554444...666666677777777** PP

                   -EESTTT--STT-EEE-HHHHHHH--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-HH CS
  Peripla_BP_2 169 ieniaaeskkseyeeisaEqilasdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyaldss 237
                   + n+aa+   +++ ++s+Eq++ ++p+vifv  r      ++++ ++ +pl++ + Avk++rV+ ++++
    EHT98312.1 234 ALNVAAST-IQGFRQVSMEQVVVWNPQVIFVQNR----YPQVVQSIQHDPLWQTIDAVKHHRVWLMPDY 297
                   ****9999.*************************....****************************987 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0003       2.7      57      95 ..      82     120 ..      55     126 .. 0.72
   2 ?    4.3   0.0    0.0027        24      68     111 ..     243     286 ..     225     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0003
        KdpD  57 viprkeveykgkeleeldldailarkpevvlvDelahtn 95 
                 ++p+ + +     l+ +dl++++a +p+vv+v ++a ++
  EHT98312.1  82 LVPELTHKAMLGDLTHVDLEKLIALHPQVVFVTNYAPKE 120
                 3455555556678999****************9998765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0027
        KdpD  68 keleeldldailarkpevvlvDelahtnapgsrhekryqdveel 111
                 + ++++++++++  +p+v++v +   + +++ +h+  +q ++++
  EHT98312.1 243 QGFRQVSMEQVVVWNPQVIFVQNRYPQVVQSIQHDPLWQTIDAV 286
                 4578899********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2746.23
//
Query:       EHT98313.1  [L=252]
Description: hypothetical protein CKS_4654 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-37  129.5   0.0    1.7e-37  129.3   0.0    1.0  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   9.7e-42   1.7e-37       1     229 [.       4     236 ..       4     237 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 9.7e-42
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT---SHHHH CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpkkikgwadL 99 
                 l+++aagsl+ +   l+aaF+a++g++ +  +g++g l+++i++g+  D++++a+  ++++l ++gl+   +   +  ++l++ ++++     ++w +L
  EHT98313.1   4 LQILAAGSLRDVWPVLVAAFSAEYGITTQTHYGPAGLLRQRIEQGEVGDMFVSANLQHPTSLSRQGLAE--DTGHFIDNRLCLTARREDVSAEDDWLSL 100
                 789******************************************************************..*****************98877777776 PP

                 HH.SS--EEEE--T-TTTTHH.HHHHGGG--..HHHHHHHHHTEEEEESSH.......HHHHHH..HHTTT-SEEEEEHHHHH..HSTTSSEEEE--TT CS
  SBP_bac_11 100 lk.pglklavadPttspsGlaalalleaaga..qellkalekkvvklgess.......rqllta..veageadagivyeseakaaengdkleavylpeg 186
                 l+ ++l+la+++P  +psG+++++l+e+ ++  ++   ++++k+  l++++       ++l+++  +++g a+++i+y s a +  + + l ++++p+ 
  EHT98313.1 101 LQrDDLRLATSTPLYDPSGDYTWQLFENIEQryPGQGSRIRNKANALVGGPdslpvpvGRLAAQwlIDEGYAELFIGYASYAPRLRHHQSLLVLNIPPA 199
                 6648************************99889666677777777666666668888755555569999**************99************** PP

                 T--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 187 lnldpldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 +n+ ++ y+ a l+ +     A  ++afL+++eaq+ilr+yGf
  EHT98313.1 200 YNV-RAQYGWATLSPS-----AIPLAAFLHTDEAQRILRRYGF 236
                 **9.999999999987.....999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2189.69
//
Query:       EHT98314.1  [L=309]
Description: homoserine transsuccinylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-131  438.2   0.0   1.3e-131  438.0   0.0    1.0  1  HTS       Homoserine O-succinyltransferase


Domain annotation for each model (and alignments):
>> HTS  Homoserine O-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.0   0.0  7.1e-136  1.3e-131       1     298 []       2     299 ..       2     299 .. 1.00

  Alignments for each domain:
  == domain 1  score: 438.0 bits;  conditional E-value: 7.1e-136
                 -EE--TT-HHHHHHHTTT---B------------EEEEEE---SSHHHHHHHHHHHHHSSSS-EEEEEE--S-----SS-HHHHHHH-B-GGGTTT--E CS
         HTS   1 pikipkdlpaveiLekenifvmeeeraakqdirplkililNlmpkkietEtqllrllgntplqvelellrlesheskntskehlekfYktfeeikdekf 99 
                 pi+ip++lpav++L++en+fvm+++ra+ q+irplk+l+lNlmpkkietE+q+lrll+n+plq++++llr++s+es+nt+++hl++fY++fe+i+++++
  EHT98314.1   2 PIRIPDELPAVNFLRNENVFVMTSSRASVQEIRPLKVLVLNLMPKKIETENQFLRLLSNSPLQIDVQLLRIDSRESRNTPSDHLNNFYRNFEDIQHDNY 100
                 8************************************************************************************************** PP

                 EEEEE---S-TTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES.S--GGGTT--SEEEEEEEEEEE--H CS
         HTS 100 DgliiTGApveqlefeevkYWeelteildwakenvtstlfiCwaaqaalyylygvekkklpeKlfGvfehkvlkekspllrgfddeflvphsRytevke 198
                 Dgli+TGAp+  +ef++v+YW +++++l wak++vtstlf+Cwa+qaal++lyg++k+++++Kl Gvfeh++l++++ l+rgfdd+fl+phsRy+++ +
  EHT98314.1 101 DGLIVTGAPLGLVEFNDVAYWPQIQQVLAWAKDHVTSTLFVCWAVQAALNILYGIPKQTRQTKLAGVFEHQILHPHALLTRGFDDNFLAPHSRYADFPT 199
                 *************************************************************************************************** PP

                 HHHTT-TTEEEEEEETTTEEEEEEESSSSEEEE-S-TT--TTHHHHHHHHHHHTT------BTTSGGG-TTS-----SHHHHHHHHHHHHHHTTTTT-X CS
         HTS 199 edieekkelevLaeseeaGvsllaskdkrevfvlgHpEYdaetLkkEyeRDlekgleielPknYfpeddpkkepkarWrshanllfsnWlnylvyqetp 297
                 + i++ ++le++aese++G++l+askdkr vfv+gHpEYda tL+ E++RD ++gl++++P nYfp+ddp+++p+a+Wrsh+nllfsnWlny+vyq tp
  EHT98314.1 200 QLITDYTDLELFAESEQTGAYLMASKDKRLVFVTGHPEYDALTLAGEFQRDYDAGLNPDVPYNYFPHDDPQRHPRATWRSHGNLLFSNWLNYYVYQITP 298
                 **************************************************************************************************9 PP

                 X CS
         HTS 298 y 298
                 +
  EHT98314.1 299 F 299
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2364.46
//
Query:       EHT98315.1  [L=532]
Description: malate synthase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.5e-198  658.3   0.0   7.2e-198  658.1   0.0    1.0  1  Malate_synthase  Malate synthase
    0.00011   21.4   0.0    0.00022   20.4   0.0    1.6  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
      0.086   11.0   0.1       0.12   10.5   0.1    1.1  1  Rota_VP2         Rotavirus VP2 protein


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  658.1   0.0  1.2e-201  7.2e-198       3     525 ..      12     531 ..      10     532 .] 0.98

  Alignments for each domain:
  == domain 1  score: 658.1 bits;  conditional E-value: 1.2e-201
                      CCCHHTHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCC CS
  Malate_synthase   3 fvkeevleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkgelndflketkylreepewktatlhielqdrrveiiGkadrkmiin 96 
                      f+k+  + ++++ltee+++f++ lv +++p+r++lL++R+ +q+++d+g+l+df  et+++r e ew+++ ++ +l drrvei+G+ drkm+in
       EHT98315.1  12 FQKPFYHLEKQLLTEETVAFLQDLVIRFAPQRDTLLAARQARQEKYDAGSLPDFEMETASIR-EREWTIRGIPSDLRDRRVEITGPPDRKMVIN 104
                      56666777899***************************************************.9****************************** PP

                      CCCCSSSEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHHHH CS
  Malate_synthase  97 alnesaittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfglif 190
                      aln+++++++aDfEDs+ap+we+l++Gq +l+ av g++s ++e ++k Y+l+   ++ ++l++R rG hl ekh+ ++G++i++g++Df+l+f
       EHT98315.1 105 ALNANVKVFMADFEDSLAPTWEKLMEGQQTLREAVAGTLSHTSE-TGKIYQLR---ADPAVLMCRVRGLHLSEKHVSWQGNAIPGGLFDFALYF 194
                      ******************************************98.********...89************************************ PP

                      HHHHHHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHTC CS
  Malate_synthase 191 fhnakelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktlr 284
                      fhn+ +l l++g+gpy++lPK+e++qEaa+w e+Fs+aed ++l+rgtikatvliEtl+a++++dei+ +lrd+++glNcGr+Dyifs+iktlr
       EHT98315.1 195 FHNVTNL-LAKGSGPYFYLPKTESWQEAAWWREIFSFAEDRFDLARGTIKATVLIETLPAVFQMDEILWNLRDHIVGLNCGRWDYIFSYIKTLR 287
                      *******.************************************************************************************** PP

                      CCCGCB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHHH CS
  Malate_synthase 285 eagdmvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfee 378
                      e++d+vLPdR++vt+++pf++aY++llvktch+rg+ amgG++a ip+k+  ++n+ +l++vredK+re+ +G+dg+W+ahP+la++a++vf++
       EHT98315.1 288 EHEDRVLPDRQSVTMAQPFLDAYSRLLVKTCHRRGAFAMGGMSALIPSKDS-ARNQWVLQRVREDKQREASNGHDGTWIAHPGLADTAMAVFNQ 380
                      ***********************************************9876.99**************************************** PP

                      CH.CHCHHCCHHTTT.HHHHHHHHCS.--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHSHC CS
  Malate_synthase 379 vd.vapnQielakee.vritaddLltkipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqgvk 470
                         ++pnQ ++ ++e + ++a++Ll+  +e+ +te+g+r+n++v+lqY++aW++g Gcvpi  LmEDaATaei r++++qWi+h  +l + g++
       EHT98315.1 381 ALgDHPNQLHVLRHEdAPVQAEQLLA-PCEGDRTEAGMRANIRVALQYLEAWISGNGCVPIDGLMEDAATAEIARTSIWQWIHHKKTLRD-GQQ 472
                      9999******999888*********7.***************************************************************.7** PP

                      HHHHHHHHHHHHHCCHHH.HHHH...CCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCCH CS
  Malate_synthase 471 vslelmaklvdeenarle.elgk...edeayreaakllkkeataeefadfltlkaykel 525
                      v+  l+++l+++e + l+ +lg+   + ++y+eaa+l+++ +t++e+  fltl+ y+ l
       EHT98315.1 473 VTASLFQQLLNDELHTLQmNLGDktfSSGRYEEAARLMAQITTENELVPFLTLPGYRLL 531
                      *****************97777788999**************************99865 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.7e-08   0.00022      87     180 ..     209     304 ..     194     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.7e-08
                 EEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH..TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHHHHHTT CS
   HpcH_HpaI  87 vvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa..avegldgvflGaeDlsadlgtkrspegtevldareriltaa 180
                  + +Pk+e+ +ea+   +++  +e+ +  a ++++  + iE+  +v +++eI+    + + g+  G  D+  +   +  ++++ vl  r+++  a 
  EHT98315.1 209 YFYLPKTESWQEAAWWREIFSFAEDRFDLARGTIKATVLIETLPAVFQMDEILwnLRDHIVGLNCGRWDYIFSYIKTLREHEDRVLPDRQSVTMAQ 304
                 5789*************************************************977789************9976666688888886666666554 PP

>> Rota_VP2  Rotavirus VP2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   2.1e-05      0.12     463     503 ..     448     488 ..     443     494 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.1e-05
    Rota_VP2 463 aeqqvanrsvaqwlhfvntlqfrrvviegvlnlvltddirt 503
                 a  ++a  s+ qw+h+  tl+ +++v+  ++++ l+d+++t
  EHT98315.1 448 ATAEIARTSIWQWIHHKKTLRDGQQVTASLFQQLLNDELHT 488
                 6678999******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3749.66
//
Query:       EHT98316.1  [L=433]
Description: isocitrate lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-108  363.0   0.5    2.8e-58  197.7   0.0    2.0  2  ICL            Isocitrate lyase family
    5.2e-16   58.8   0.1    1.1e-15   57.8   0.1    1.5  1  PEP_mutase     Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
        0.1   12.8   1.0       0.28   11.5   0.7    1.9  2  ETC_C1_NDUFA4  ETC complex I subunit conserved region


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.7   0.0   4.7e-62   2.8e-58       2     253 ..       7     254 ..       6     255 .. 0.90
   2 !  163.6   0.9     1e-51   6.1e-48     353     526 .]     256     433 .]     253     433 .] 0.95

  Alignments for each domain:
  == domain 1  score: 197.7 bits;  conditional E-value: 4.7e-62
                 HHXHHHHHTSGGGGG---SS-HHHHHHH--SS-.---THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH.-S-EEE-HHHHHHH--TT--- CS
         ICL   2 vaevkkwwsdsrwrktkrvysaedivskrGnlk.ieyasseqakklfklleeheaektasktfGaldpvqvtqmaky.ldtiyvsGwqssstastsnep 98 
                 ++++++ w++ rw+   r+ysa+d++s rG++      +++ a kl+ ll+   +++ +  + Gal   q  q ak  +++iy+sGwq ++ a  + + 
  EHT98316.1   7 IQQLEQDWQEARWQGITRPYSAQDVISLRGSVLpACTLAERGAGKLWSLLNGSARKGYV-NSLGALTGGQALQQAKAgIEAIYLSGWQVAADANLAGQM 104
                 5678899***********************976367778889********988777766.679*******999999659******************** PP

                 -SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT-------- CS
         ICL  99 spdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhma 197
                  pd + yp+++vp+ v  +  + +  d+ q  + +     e      +dy+ pi+ada++G+GG+   + l k +i  Gaa +h edq ++ kkcGhm 
  EHT98316.1 105 YPDQSLYPVNSVPEVVTRVNQTFQRADQIQWANGI-----EPGDSRFIDYFLPIVADAEAGFGGVLNAFELMKAMISAGAAAVHFEDQLAAVKKCGHMG 198
                 ****************9975444444444433333.....3344568**************************************************** PP

                 -EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEE CS
         ICL 198 GkvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilG 253
                 Gkvlvp qe +++lva+r++ad++g+ ++++artd++aa lits  d  d  fi G
  EHT98316.1 199 GKVLVPTQEALQKLVAARLAADVMGVPTILLARTDADAADLITSDCDDYDRPFIRG 254
                 *****************************************************987 PP

  == domain 2  score: 163.6 bits;  conditional E-value: 1e-51
                 --TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--HHHHHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHHHHSHHHHHHHTTEEEEEETTHHH CS
         ICL 353 rvreGyyrykGgtqcsvvravafapyadliwmesklpdyaqakefaeGvkakvpeqklaynlspsfnwkkamsadeqetyikrlaklGyvwqfitlaGl 451
                 r+ eG+yr + g++ ++ r++a+apyad++w e+++p++a a+ fae ++a++p + layn spsfnwkk         + + l+++Gy +qfitlaG+
  EHT98316.1 256 RTAEGFYRTHAGIEQAISRGLAYAPYADVLWCETSTPNLAMAQRFAEAIHARFPGKLLAYNCSPSFNWKKNLDDSTIAAFQQALSEMGYRFQFITLAGI 354
                 99************************************************************************************************* PP

                 HHHHHHHHHHHHHHHH.HTHHHHHHHTHHHH...HHHT-GGGSHHHHHTHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 452 htnalisdkfakdyak.rGmkaygeevqeee...idnGvdvvkhqkwsGaeyidellklvtGGvsstaamGkGvtedqf 526
                 h+  +   ++a++ya+ +Gm+ y+e+vq++e   ++ G    +hq+  G+ y+d++  +++GG ss +a+     e+qf
  EHT98316.1 355 HSMWFNMFDLAQAYAQgEGMRHYVEKVQQPEfaaRERGYSFSSHQQEVGTGYFDQVTTIIQGGQSSVTALTGSTEEHQF 433
                 ***************868************9443478********************************9877777777 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   1.8e-19   1.1e-15      26     167 ..      80     280 ..      70     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.8e-19
  PEP_mutase  26 eeagfkalatsSlavaasl...G..vpDgeelpleellaavraiaevvs......................lPlivDledGygespeevaetvrrliaa 97 
                 ++ag++a+ +s+++vaa +   G  +pD++  p++++ ++v ++ ++ +                      lP+ +D+e+G+g  + +  e  + +i+a
  EHT98316.1  80 AKAGIEAIYLSGWQVAADAnlaGqmYPDQSLYPVNSVPEVVTRVNQTFQradqiqwangiepgdsrfidyfLPIVADAEAGFGG-VLNAFELMKAMISA 177
                 6789***********986533345589********99999999999998999*******************************9.788889******** PP

  PEP_mutase  98 GvvgvniEDk.....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtdalll.........................sagagleeaieRar 163
                 G+++v++ED+     k++  +++ l++ +e+++k+ aar aa+  g   ++ ARtda                            + +ag+e+ai+R+ 
  EHT98316.1 178 GAAAVHFEDQlaavkKCGHmGGKVLVPTQEALQKLVAARLAADVMGvpTILLARTDADAAdlitsdcddydrpfirgdrtaegfyRTHAGIEQAISRGL 276
                 ***********998655554778888********************999********7778888*****************999999999********* PP

  PEP_mutase 164 aYae 167
                 aYa 
  EHT98316.1 277 AYAP 280
                 *985 PP

>> ETC_C1_NDUFA4  ETC complex I subunit conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.4   8.3e+03      51      76 ..     181     206 ..     176     215 .. 0.76
   2 ?   11.5   0.7   4.7e-05      0.28      36      93 ..     340     398 ..     320     401 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                    EEEESSHHHHHHHHHHCT-EEEEE-S CS
  ETC_C1_NDUFA4  51 slkFdskedAiayaekqgweyeveep 76 
                    +++F+++ +A++ + ++g +  v ++
     EHT98316.1 181 AVHFEDQLAAVKKCGHMGGKVLVPTQ 206
                    57899999999999988877766554 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.7e-05
                    TTT-SSSS--SEEECE.EEESSHHHHHHHHHHCT-EEEEE-SST-XXXXXXXXXXXXXX CS
  ETC_C1_NDUFA4  36 plmGWtssaDtlsqvs.lkFdskedAiayaekqgweyeveepkkrkvkpksYadnfsvk 93 
                    + mG+  +  tl+ ++ + F+  + A aya+ +g++++ve+ ++ ++  ++ +  fs +
     EHT98316.1 340 SEMGYRFQFITLAGIHsMWFNMFDLAQAYAQGEGMRHYVEKVQQPEFAARERGYSFSSH 398
                    45999999999999665************************988888777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3285.56
//
Query:       EHT98317.1  [L=606]
Description: isocitrate dehydrogenase kinase/phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-230  766.9   0.0   1.3e-230  766.7   0.0    1.0  1  AceK      Isocitrate dehydrogenase kinase/phosphatase (AceK)


Domain annotation for each model (and alignments):
>> AceK  Isocitrate dehydrogenase kinase/phosphatase (AceK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  766.7   0.0  7.3e-235  1.3e-230       1     559 [.       8     564 ..       8     566 .. 0.99

  Alignments for each domain:
  == domain 1  score: 766.7 bits;  conditional E-value: 7.3e-235
        AceK   1 iaeailegFdkhyrlfreitarakerFeqadwkavqkaareRielydervkevveklkeelkeealdeelwqqvkeeyaklleehkqaelaetFfnsvl 99 
                 ia++il+gFd++y +f +ita+a++rFeqa+w avq+a+++Ri+lyd++v+ v+++l++  ++++ d+++w ++k++y++ll+ ++++e+ae+Ffnsv+
  EHT98317.1   8 IAHTILQGFDAQYGRFLDITAGAQQRFEQAEWLAVQQAMKARIHLYDHHVALVADQLRALNGAAHWDDAFWLKIKNHYETLLPGYPRYEIAESFFNSVY 106
                 89************************************************************************************************* PP

        AceK 100 rrllkrkkldndllfvrpaasteeaeeee.plvrsyypeeegleevleriledlelelpfedlerdvellaealrerllksekeaeelqievlkslFyR 197
                 +rl  +++l+++ lf+ ++++   +++ + pl+r+y+p+ +g++++l+++l+d+ l+lp++d++rd + ++++l+e +  s+++ ++  ++v+ +lFyR
  EHT98317.1 107 CRLHGHHALQPERLFIFSSQPPAPQRQVSrPLARTYRPD-RGWQTLLHEVLRDVPLTLPWQDQARDEAWIVRHLHEAF--SSAQLAQGWLDVCCELFYR 202
                 ********************9999888877999999999.************************************97..67899999*********** PP

        AceK 198 nkaAylvGriineeeelplvipllneekgklvvdavlteeedlsivFsfarayFmvdlevpaalvafLrellpkkkkaelYtaiGlqkqgKtefyrdfl 296
                 nk+A++v+r+  ++++lp+++p++++e+++l++d++lt+ +++sivF+farayFmv+++ p alva+L+ +lp k+ ae Y+aiG+qk+gKte yr++l
  EHT98317.1 203 NKTAWIVARLHLPDAILPCLLPVQRSEQDELWIDTCLTDVNEASIVFGFARAYFMVYAPLPGALVAWLKPVLPGKTLAERYMAIGCQKHGKTESYREYL 301
                 *************************************************************************************************** PP

        AceK 297 khleeskdkfviApGikGlVmlvFtlpsydvvfKvIkDrfapskevtreevkekYrlVkehDRvGrmaDtleysnvalprarfspelleeLkeeapssl 395
                 + le+++ +f+iA Gi+G+VmlvFtlp++d vfKvIkDrfap+kevt+e+v+++Y++VkehDRvGrmaDt+ ++++alp+ar+ p+ll  ++++++ ++
  EHT98317.1 302 QALEQTDAAFEIALGIPGMVMLVFTLPGFDRVFKVIKDRFAPQKEVTEEQVRACYQQVKEHDRVGRMADTQAFEKFALPLARITPALLVAFQNTIAGKM 400
                 *************************************************************************************************** PP

        AceK 396 eeegdeliikhlyierrltPLnlyleeadeeeleaaveeyGnaikqlaaaniFpgDmllkNFGvtrhgrvvfYDYDeieyltevnfreiPearteedel 494
                 ++egd+lii+hl++err++PLnl+l+ea++++ ++a+eeyGnaikqlaaaniFpgDml+kNFG+trhgrvvfYDYDei+ ++e++fr++P+ar+eedel
  EHT98317.1 401 RIEGDRLIISHLWLERRMQPLNLFLAEASDSQRAQAIEEYGNAIKQLAAANIFPGDMLFKNFGITRHGRVVFYDYDEIRPMQELHFRDVPAARYEEDEL 499
                 *************************************************************************************************** PP

        AceK 495 ssepwysvapndvFPeefetfllgdpkvrkafkelhaeLldaeyWqelqerireGevedvfpYee 559
                 s+epwysv+p+dvFPe+f+  l+++pkv +++++ h+e++da +W++ q+ri++G++edv++++ 
  EHT98317.1 500 SAEPWYSVGPDDVFPETFRYALCSEPKVGALLQQRHPEIFDAGWWRAQQRRIAQGHIEDVIAWQP 564
                 **************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4558.05
//
Query:       EHT98318.1  [L=420]
Description: putative outer membrane porin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3154.31
//
Query:       EHT98319.1  [L=276]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-40  136.2   0.0    8.3e-40  135.6   0.0    1.3  1  IclR       Bacterial transcriptional regulator
    8.2e-18   63.9   2.2    8.2e-18   63.9   2.2    1.8  2  HTH_IclR   IclR helix-turn-helix domain
    0.00011   22.0   0.3    0.00028   20.7   0.3    1.7  1  MarR_2     MarR family
     0.0018   18.2   0.1     0.0035   17.2   0.1    1.4  1  MarR       MarR family
      0.002   18.4   0.1     0.0046   17.3   0.1    1.5  1  Rrf2       Transcriptional regulator
     0.0054   16.3   0.0     0.0098   15.4   0.0    1.4  1  HTH_24     Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.032   14.2   0.1      0.094   12.7   0.1    1.8  1  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.037   14.1   0.1       0.16   12.1   0.1    2.0  2  HTH_20     Helix-turn-helix domain
      0.041   13.5   0.1       0.14   11.7   0.0    1.8  2  HTH_47     winged helix-turn-helix
      0.077   12.9   0.0       0.17   11.8   0.0    1.6  1  TrmB       Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   4.6e-43   8.3e-40       3     128 ..     147     271 ..     145     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 4.6e-43
                 EEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEE CS
        IclR   3 lravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsg 101
                 +r+   iG +lp++a+++GKa+La+l++++++all++++l+ +t++T+ +p++L+ +La++R++G+++d+eE+ +g+rc+Aapi+d++ge+ aA+s+sg
  EHT98319.1 147 MRMSAPIGGKLPMHASGAGKAFLAHLSDDKVTALLHQKGLHYYTPNTLMSPQSLKTNLAQIRTRGFSFDDEEHALGLRCVAAPIYDEHGEPCAALSISG 245
                 555666********************************************************************************************* PP

                 ETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 102 ptarlteeelkeellalvreaArkisr 128
                 p+ar+t+++++e l alv+  Ar++++
  EHT98319.1 246 PIARMTDDRITE-LGALVIREARQVTQ 271
                 ************.**********9976 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   2.2   4.6e-21   8.2e-18       1      51 [.      29      79 ..      29      80 .. 0.98
   2 ?   -3.8   0.0       6.8   1.2e+04      35      44 ..     108     117 ..     108     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 4.6e-21
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                sl+R+l +L+++a+ ++ + l+elA+++glp St+hRlL t++++G+v+q 
  EHT98319.1 29 SLTRGLTLLELIASSQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQV 79
                79***********************************************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.8
                 HHHHHHHHHH CS
    HTH_IclR  35 vhRlLqtLve 44 
                 vh  L++L+e
  EHT98319.1 108 VHPVLRSLME 117
                 7888999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.3   1.6e-07   0.00028      10      55 ..      35      80 ..      28      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-07
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                 L++L ++  + ++ +ela+  gl+ s+++r+l  ++++G+v+++ 
  EHT98319.1 35 TLLELIASSQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVG 80
                5666666665679*****************************9885 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     2e-06    0.0035      13      48 ..      42      77 ..      31      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
                HHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 13 yeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                ++qg+  ++eLa + g+ +st+ r+l+++ ++G+++
  EHT98319.1 42 SSQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVR 77
                46777*****************************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.6e-06    0.0046      12      57 ..      35      78 ..      28      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
                HHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2 12 hallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvks 57
                + ll+L + ++++ v+++e+a++ +++ s   ++l++++++g+v+ 
  EHT98319.1 35 T-LLELIASSQGS-VALTELAQQAGLPNSTTHRLLTTMQQQGFVRQ 78
                3.44454555545.9*****************************85 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.5e-06    0.0098       9      48 .]      37      77 ..      33      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.5e-06
      HTH_24  9 LelLqk.nprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                Lel+   +++   +eLA++ gl+ st++r l  ++++G+++
  EHT98319.1 37 LELIASsQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVR 77
                66666667788999************************996 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.2e-05     0.094      23      52 ..      48      77 ..      33      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglis 52
                  +elA+  Gl  +t+ r+l+ ++++g ++
  EHT98319.1 48 ALTELAQQAGLPNSTTHRLLTTMQQQGFVR 77
                4579***********************998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.8e-05      0.16      20      58 ..      42      80 ..      31      81 .. 0.87
   2 ?   -2.1   0.0       2.3   4.1e+03      14      27 ..     167     179 ..     166     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.8e-05
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                ++ + + ++ela++ +l+ +t ++ L ++++ g+v++v+
  EHT98319.1 42 SSQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVG 80
                56678899***************************9985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
                 HHHHHHSTCTTB-H CS
      HTH_20  14 rilraLaraeglta 27 
                 ++l++L +++ +ta
  EHT98319.1 167 AFLAHL-SDDKVTA 179
                 578888.7777776 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.9e-05      0.14      33      77 ..      33      77 ..      22      78 .. 0.88
   2 ?   -1.5   0.0       1.1     2e+03      36      52 ..     124     140 ..     114     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.9e-05
                HHHHHHHHHH-EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 33 emallwvLnlaDGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                  +ll++++ + G+  L ++A+++glp  +   ++  ++++g ++
  EHT98319.1 33 GLTLLELIASSQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVR 77
                5689*********************************99999886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 HHHHHHH-EEEEEHHHH CS
      HTH_47  36 llwvLnlaDGkrsLldi 52 
                  l vL l+D +  ++d 
  EHT98319.1 124 NLAVLDLSDFQAVIIDQ 140
                 58899999988888775 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.17      19      54 ..      43      78 ..      34      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVer 54
                ++g+   +e+a+++g+p s+  + L  + + G+V+ 
  EHT98319.1 43 SQGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQ 78
                67888999**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2083.34
//
Query:       EHT98320.1  [L=696]
Description: outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-267  888.6  12.9   3.8e-267  888.5  12.9    1.0  1  YjbH      Exopolysaccharide biosynthesis protein YbjH


Domain annotation for each model (and alignments):
>> YjbH  Exopolysaccharide biosynthesis protein YbjH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  888.5  12.9  2.1e-271  3.8e-267       1     659 [.      32     689 ..      32     690 .. 0.97

  Alignments for each domain:
  == domain 1  score: 888.5 bits;  conditional E-value: 2.1e-271
        YjbH   1 slsdfGgvGllqmPsArmapeGelslgvsyndeyrryslslqllpwLevtirYtsvrdllyssaesfsgdqkykDksiDlklrlleEskwlPevavGlr 99 
                 s+sdfGgvGl+q+P+Arma+eGe+sl++++nd+yr ys+slql+pwLe+t+rYt+vr+++ys+ esfsg+q+ykDk++Dlklrl++E++wlPev++G r
  EHT98320.1  32 SQSDFGGVGLMQVPTARMAREGEFSLNFRDNDQYRYYSASLQLFPWLETTVRYTDVRTRRYSAVESFSGNQSYKDKAFDLKLRLWQEGYWLPEVSFGTR 130
                 79************************************************************************************************* PP

        YjbH 100 DfgGTglfdgeYlvatkrfgnldvtlGlGwgrlGssgnltnplcklsdefderesskgegGevdlerwFrGeaalFGGveyq.pweplrlklEYdgndY 197
                 D+gGTglfd+eYlvatk++g++d+tlG+Gwg+lG+sg ++np+c+ sd+f++r+ + g++G+++ +++F+G++a+FGG+eyq pw+plrlk+EY+gndY
  EHT98320.1 131 DLGGTGLFDSEYLVATKAWGPFDFTLGFGWGYLGNSGTVSNPFCSYSDSFCQRP-GVGQAGSINGSQMFHGPSAVFGGIEYQtPWQPLRLKVEYEGNDY 228
                 *****************************************************6.5578**************************************** PP

        YjbH 198 seetaesklkqkspfNvGleYrlgdwldlslsyerGntlglglslrtnlnelkavskledapapvlerkaaaaeeadesalaeeLak...eagleleki 293
                 ++++a+ +l+q+s++NvG+ Yr++dw+d+++syerGnt+++g+++rtn+n+++  + ++d+p+p+++++++ +   + + + ++L++   +agl+  ki
  EHT98320.1 229 KDDFAG-RLPQRSKVNVGAIYRVTDWADINASYERGNTFMFGFTIRTNFNDMH--QDHIDSPKPAYDPHPQPK-LLETTVTGNQLSAlkyDAGLAGPKI 323
                 *****9.99*******************************************9..99***********99997.5677777777776666********* PP

        YjbH 294 aldgdtltvelentryrdeaeaveraarvlanelpasvetlkvveteeglplsetevrredleqleneksaaaelaaaselaeaaeeapdpaakeqlle 392
                 +++g+tl+v++e+t+yrd++e v+ra+r+++n+lp+ ++t++v+e++ ++p ++te+++++l++  + +  ++e++     ++ ++++ dp ++eq++ 
  EHT98320.1 324 QTKGNTLYVSGEQTKYRDTREGVDRANRIIMNNLPDGIDTINVTESRFNMPQVTTETSVASLRNDLTGYPLGHEQSL----QQVRKNPVDPGQTEQGMF 418
                 ****************************************************************9999999888887....77888999999999**99 PP

        YjbH 393 keperfslslspkleqslgdpegfllyqlgveasasyeltdglvlsgslrvnlldnldkfkysnsse...lprVRtdireYvkekdvtlenlqltwyer 488
                  +++r++++lsp+l+qs+g+pe+f+lyq+gv+++++y+lt++l +sgsl +n+++n++kf+y+ +++   lprVRt+ir+Yv e++v+++ lq+++++ 
  EHT98320.1 419 IRKDRLDYGLSPVLNQSVGGPESFYLYQVGVMGNVDYWLTNHLLVSGSLFANVANNYNKFNYNGAPAdstLPRVRTHIRDYV-ENNVYVNDLQANYMDY 516
                 **************************************************************55444456************.999************* PP

        YjbH 489 lgedlytrvyaGyLEemygGvggEvLYrPvnsrwAlGldlnyvkqRdfdqlfgfrdykvvtghvsaYyq..flegvllkvsvGrYLAgDkGatvdlsre 585
                 lg+++y++vy+GyLE+mygGvggEvLYrPv+s+wA+G+d+nyv+qRd++++++f+ y+  tg+++ Y++  f+e+vl+k s+G+YLA+DkG+t+d+s++
  EHT98320.1 517 LGNGFYGQVYGGYLETMYGGVGGEVLYRPVDSNWAVGVDANYVRQRDWNDMMRFTHYEAPTGNLTGYWRpwFAEDVLVKASIGQYLAKDKGVTLDVSKR 615
                 **********************************************************************99999************************ PP

        YjbH 586 FdsGvrvgafatlTdvsaeeygegsfdkGiylsiPldlllgkpsrsrakislspltRDgGqrlnrkgrLYdlvr 659
                 FdsGv vg++at+T+vs+++ygeg+f+kG+y+siP+dl++++p+r ra+i++ pltRDgGq+l rk++LYd+++
  EHT98320.1 616 FDSGVMVGVYATKTNVSSQQYGEGDFTKGFYISIPMDLFTVTPTRGRAQINWVPLTRDGGQMLGRKYQLYDMTS 689
                 ************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 5209.25
//
Query:       EHT98321.1  [L=247]
Description: YmcB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-68  228.3   0.1      1e-67  228.1   0.1    1.0  1  Caps_synth_GfcC  Capsule biosynthesis GfcC
  ------ inclusion threshold ------
        0.2   11.8   0.0       0.31   11.2   0.0    1.3  1  ssDBP_DBD        Single stranded DNA-binding protein ss DNA b
        2.9    7.8   0.0        2.9    7.8   0.0    2.9  3  ScsC_N           Copper resistance protein ScsC N-terminal do


Domain annotation for each model (and alignments):
>> Caps_synth_GfcC  Capsule biosynthesis GfcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   0.1   1.7e-71     1e-67       2     227 ..      21     246 ..      20     247 .] 0.99

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 1.7e-71
  Caps_synth_GfcC   2 aqqtvevvlkgkeldlslasavrleqllldaqlaaniywpgaalsdlaaqaeaekqrqevlqqLaeleksadedlkaaikqlrqqleklklagR 95 
                      a++ v+v  ++  ++++l+++++l ql+++++l a+ +w  a++ ++ a+a+a++q+q+ l++L  + ++++++++aai+++++q  ++k++gR
       EHT98321.1  21 AAGQVTVHAPQDTASVQLNQVENLAQLVTQPALMAQTDWRRAVIAEQGATAQARQQYQQALAALRTWRADSSGEQAAAIEAVIRQFSNMKVTGR 114
                      678899**************************************************************************************** PP

  Caps_synth_GfcC  96 ikvnlDpDlvrvkeelnppLqGeYaLyvaprptkvsllGlvsqagevpflpgadvadYlksarllsgadksevyviqpdGkvskapvayWnkqh 189
                      + v lDpD++r++++ n+ L G Y Ly+ +  ++v llG++  ag  +++pg +v++Yl++++ l+ga+++ ++vi+pdG ++++p+ayWn++h
       EHT98321.1 115 QLVTLDPDRIRLHSADNRRLDGRYDLYLTQPSHHVLLLGAIAGAGREAWQPGKSVREYLRDHPRLAGAERNFAVVIAPDGTTQNVPIAYWNHRH 208
                      ********************************************************************************************** PP

  Caps_synth_GfcC 190 vevapGstiyvgfeesvlpeqysalnedivellrnrip 227
                      ve+ pGs+i+vgf+  +lp  +++ln+++v++l+ rip
       EHT98321.1 209 VEPEPGSIIFVGFSSWSLPGAFDDLNSRLVSVLTHRIP 246
                      ************************************98 PP

>> ssDBP_DBD  Single stranded DNA-binding protein ss DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.1e-05      0.31      24      78 ..     130     184 ..     105     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.1e-05
   ssDBP_DBD  24 sagrlfgrygp.ggrpeffkllfgavagslreqfgpdgenifnrirdsekfretsr 78 
                    rl gry     +p    ll+ga+ag+ re + p g+ + + +rd  ++  + r
  EHT98321.1 130 DNRRLDGRYDLyLTQPSHHVLLLGAIAGAGREAWQP-GKSVREYLRDHPRLAGAER 184
                 456999999862589*******************99.7888888888877766555 PP

>> ScsC_N  Copper resistance protein ScsC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.2      0.71   4.3e+03      22      32 ..      79      89 ..      72      90 .. 0.72
   2 ?    3.7   0.4    0.0093        56       1      11 [.      95     105 ..      95     106 .. 0.90
   3 ?    7.8   0.0   0.00048       2.9       7      17 ..     167     177 ..     166     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.71
      ScsC_N 22 EAlqaLqkkqa 32
                +Al+aL+ ++a
  EHT98321.1 79 QALAALRTWRA 89
                57788877765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0093
      ScsC_N   1 Qkaaiekivrd 11 
                 Q aaie+++r+
  EHT98321.1  95 QAAAIEAVIRQ 105
                 789*******7 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00048
      ScsC_N   7 kivrdYLleNP 17 
                 k vr+YL+ +P
  EHT98321.1 167 KSVREYLRDHP 177
                 569******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1787.08
//
Query:       EHT98322.1  [L=215]
Description: putative outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-66  222.4   0.2    4.5e-66  222.2   0.2    1.0  1  YjbF      Group 4 capsule polysaccharide lipoprotein gfcB, Yj


Domain annotation for each model (and alignments):
>> YjbF  Group 4 capsule polysaccharide lipoprotein gfcB, YjbF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.2   2.5e-70   4.5e-66       2     188 .]      25     210 ..      24     210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 2.5e-70
                 HHHHHHHCC-------HHHHHH-SS-EEEEEETT--EEEEEEEEEETT.EEEEEETTTEEEEEETTEEEEEESSSS-EEEESSGGG-GGGGGGG--.TT CS
        YjbF   2 dtlklalfgeedveltreqiaalpyasiyvkindgpqafvvlayaenglqlkWlssDkamlvtrnGrlvkTlglgnnLlsvenleadplalallalsra 100
                 +t+  a++g++dv++t+++i+alpyas+y++indgp++fvvl+y eng q+kW+++D+ mlvt +Grl+kTlgl++nL++v+nl++dpla++l+ + ++
  EHT98322.1  25 QTVIMAIEGPKDVTVTPQEIDALPYASLYARINDGPRIFVVLGYNENG-QQKWITRDQSMLVTAHGRLIKTLGLPDNLMNVSNLQQDPLAKGLSLT-NG 121
                 578889******************************************.*****************************************999999.** PP

                 -EEEEEEEEEETTEEEEE.EEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEEEEEEETTT--EEEEEEESSSS-SEEEEEEE CS
        YjbF 101 gswqrildwqekyrygyl.adstfrragketvtilektvettrieEsvevpaleaefqNqYwvdsqsgqvvkSrQylgPelgkleitlL 188
                 ++w+ri++w+ + +++++ ++stf+r ++e +ti+++++++++++E +++++l+ e+qN++w+d++sgqvv+SrQ+l+++ +++eit+L
  EHT98322.1 122 QHWTRIVQWTGQGKFQSAtVSSTFERGDDEVLTIAGNRIPCRVWHEALRIDSLGREWQNTFWIDNSSGQVVQSRQMLAADTFPVEITIL 210
                 ***************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1658.90
//
Query:       EHT98323.1  [L=81]
Description: secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-29   99.5  27.7      1e-28   99.3  27.7    1.0  1  YjbE             Exopolysaccharide production protein YjbE


Domain annotation for each model (and alignments):
>> YjbE  Exopolysaccharide production protein YjbE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3  27.7   5.8e-33     1e-28       1      78 []       1      79 [.       1      79 [. 0.94

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 5.8e-33
        YjbE  1 mkk.ivvllailvlaastsvsAApe.aGeAAGaqAsamsaGtseAvgigavaallGvalAasGGGdGantgtttttttgt 78
                mkk ++++la+ ++a+s+s++AApe aG+AAGaqA+++saGt++Avgig+++al+G+++AasGGGdGantgtttttttgt
  EHT98323.1  1 MKKrMIAGLAL-LVAVSSSAYAAPEeAGAAAGAQAGTISAGTTTAVGIGVLGALVGLGVAASGGGDGANTGTTTTTTTGT 79
                77758888765.578999*************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 715.36
//
Query:       EHT98324.1  [L=548]
Description: glucosephosphate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-255  848.0   0.1   2.2e-255  847.8   0.1    1.0  1  PGI       Phosphoglucose isomerase


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  847.8   0.1  1.2e-259  2.2e-255       1     486 []      52     541 ..      52     541 .. 1.00

  Alignments for each domain:
  == domain 1  score: 847.8 bits;  conditional E-value: 1.2e-259
                 E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B--EE CS
         PGI   1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkaitdv 99 
                 d+skn++++e+l++l++la+e++l+ a+ ++f+Gekin+te+ravlhvalrnrsn+pi+vdGkdv+pev++vl+kmk+fse++  G+wkG+tgk itdv
  EHT98324.1  52 DFSKNRITQETLDKLLALAKETDLSGAIASMFSGEKINRTEDRAVLHVALRNRSNTPIKVDGKDVMPEVNAVLAKMKSFSERIIGGDWKGYTGKPITDV 150
                 9************************************************************************************************** PP

                 EEE--GGGTHHHHHHHHHTGGG-TT-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--GGGGGGTEEEESS-HHH CS
         PGI 100 vniGiGGsdlGPvlvtealkkeserlkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalkedsavakhfvalstnaek 198
                 vniGiGGsdlGP +vteal++++++l+++fvsnvdgthiae+lk+l pettlf+vasktftt+et++na+sa++w+lk+++++++vakhf+alstna+ 
  EHT98324.1 151 VNIGIGGSDLGPFMVTEALRPYKNHLNMHFVSNVDGTHIAETLKDLSPETTLFLVASKTFTTQETMTNAHSARDWFLKTAGDQQHVAKHFAALSTNAKA 249
                 *************************************************************************************************** PP

                 HHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGGTTHHHH CS
         PGI 199 veefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqylerlaay 297
                 v efGid++nmfefwdwvGGryslwsaiGls+ lsiGfenfe+ll+Ga+a+dkhf ++p ekniPvllal+g+wy+nf+gaeteailpydqy++r+aay
  EHT98324.1 250 VGEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGFENFEQLLSGAHAMDKHFSTTPAEKNIPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAY 348
                 *************************************************************************************************** PP

                 HHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-GGGGHHHHHHHHHHHHHHHHHHH-B-HHHHHHHHHH CS
         PGI 298 lqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqnieiadhhkillsnffaqtealmvGkseeevkkelak 396
                 +qq++mesnGk+v++ g+ v ++tg+ii+Ge+gtngqhafyqlihqGtkl+Pcdfia++ s+n   adhh +llsnffaqteal++Gks+e v+ke++ 
  EHT98324.1 349 FQQGNMESNGKYVDRAGQPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLVPCDFIAPAISHN-ALADHHPKLLSNFFAQTEALAFGKSREVVQKEFTD 446
                 ***************************************************************.99*******************************99 PP

                 T.....HHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS-HHHHHHH CS
         PGI 397 a.....kveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdfdsstngli 486
                 a     +v ++vp+k+feGnrP+nsill+++tp++lGalialyehki++qG+i++i +fdqwGvelGk+la++il+ele++++++++dsstn+li
  EHT98324.1 447 AgksaeSVAHIVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGAILNIFTFDQWGVELGKQLANRILPELEDDSNITSHDSSTNALI 541
                 99999999*************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4252.76
//
Query:       EHT98325.1  [L=450]
Description: aspartokinase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-49  166.6   0.8      1e-48  166.1   0.8    1.2  1  AA_kinase        Amino acid kinase family
    1.9e-06   27.5   0.0    7.6e-06   25.6   0.0    2.0  2  ACT              ACT domain
    9.8e-06   25.3   0.0      0.037   13.8   0.0    3.0  2  ACT_7            ACT domain
  ------ inclusion threshold ------
       0.08   12.7   0.1       0.25   11.1   0.1    1.8  1  T2SS-T3SS_pil_N  Pilus formation protein N terminal region


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.8   2.3e-52     1e-48       2     240 ..       5     278 ..       4     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: 166.1 bits;  conditional E-value: 2.3e-52
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC...................E..HHHHHHHHH...... CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaa...............glrstleeagevatr...... 79 
                 + V K+GG+s++d ++  ++r a+ + +   s+ +lvv ++  ++t+ l++l ++ +++ ++a               +                    
  EHT98325.1   5 LNVAKFGGTSVADFDA--MNRSADVVLQD--SNTRLVVLSASAGITNLLVSL-AEGQETSQRAaqlddirriqyaiidR-------------Lnnpdvi 85 
                 569*************..*********99..666666666668*********.33333333322445555555555551.............0444444 PP

                 ...........................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHT...T-EEEEES CS
   AA_kinase  80 ...........................dalaslgerlvaallaaglpavglsaaaldateagr...degsdgnvesvdaeaieellea...gvvpvltg 145
                                            d+l+s+ge +++ l+ + l+++g++a+++d+++  r   ++g+++++  v ae++  +l+      ++v++g
  EHT98325.1  86 rdeidriidnigmlsdaaalatssaltDELVSHGELMSTLLFVEILRERGVNAEWFDVRKVMRtndRFGRAEPDVAVLAEQVSVQLQPriaAALVVTQG 184
                 445555566677777777777778889***************************************888888888888888888885544349****** PP

                 EEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 146 figldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvIt 240
                 fig+ e+g    lgrg+sD++aall+eal+A ++ i+tdV+G+y+ dp++vp a++++ei+++ea+e    +at+G+kv+hpa+l +a r++ipv++ 
  EHT98325.1 185 FIGSEEKGRtttLGRGGSDYTAALLGEALNAARVDIWTDVPGIYTTDPRVVPAAKRIDEITFEEAAE----MATFGAKVLHPATLLPAVRSDIPVFVG 278
                 *******************************************************************....*************************96 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.7e-09   7.6e-06      10      66 ..     322     379 ..     316     380 .. 0.88
   2 ?   -2.9   0.0       1.4   6.2e+03      44      63 ..     426     445 ..     422     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.7e-09
                 STTHHHHHHHHHHHTTSEEEEEEEEEESTT.ECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  10 rPGlLarvfgaladrgiNidsieqrssedk.vagivfvvivvdeedleevlealkkle 66 
                  PG L++vf++l ++++++d i+++++      + + ++ ++d+   +++l +l +l+
  EHT98325.1 322 TPGFLSEVFNILVRHNVSVDLITTSEVSVAlTLDTTGSTSTGDHLLSQALLTELSSLC 379
                 6**************************9988888888888888888888888888876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                 EEEEEEEEHHHHHHHHHHHH CS
         ACT  44 vfvvivvdeedleevlealk 63 
                 ++++++v  +d+e+v+++l+
  EHT98325.1 426 YNLCFLVPGDDAESVVRTLH 445
                 67889999999999999886 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00045         2       9      43 ..     312     346 ..     306     352 .. 0.82
   2 !   13.8   0.0   8.2e-06     0.037       2      64 ..     383     445 ..     382     446 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00045
                 EEE-S-.---SS--HHHHHHHHHHTTT---EEEE.- CS
       ACT_7   9 lsvvgsglpfdvtGivaklaspLaeagIsifqiS.t 43 
                 +++++ ++ + ++G+++++++ L ++++s+  i+ +
  EHT98325.1 312 VTLHSLNM-LHTPGFLSEVFNILVRHNVSVDLITtS 346
                 56677777.669******************888855 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.2e-06
                 EEEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE.-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   2 sedgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS.tyrtdyiLVpeedlekAveaLh 64 
                 +e++ + + ++g+ l   ++G+ ++++++L   +  +     + +   +LVp +d+e +v++Lh
  EHT98325.1 383 VEENLALVAIIGNELS-KACGVGKEVFGVLEPFNLRMICYGaSSYNLCFLVPGDDAESVVRTLH 445
                 799999*******995.5************7666665544459999*****************9 PP

>> T2SS-T3SS_pil_N  Pilus formation protein N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.5e-05      0.25      32      65 ..      25      59 ..      23      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.5e-05
  T2SS-T3SS_pil_N 32 advtvlspr.evlltGksvGtTnlivwdaggrell 65
                     adv++++++ +++++  s+G Tnl v  a+g+e +
       EHT98325.1 25 ADVVLQDSNtRLVVLSASAGITNLLVSLAEGQETS 59
                     89999988889****************99999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3597.19
//
Query:       EHT98326.1  [L=310]
Description: sodium-dependent transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-37  127.3  18.5    9.1e-37  126.6  18.5    1.3  1  SBF       Sodium Bile acid symporter family
    1.5e-20   73.7  18.1    1.7e-20   73.6  18.1    1.1  1  SBF_like  SBF-like CPA transporter family (DUF4137)


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6  18.5     1e-40   9.1e-37       3     193 ..      37     213 ..      35     215 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 1e-40
         SBF   3 lLilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlvalstl 101
                 lL+l+mf+mg++++++++k++l+rp ++l+  +l+++++Pl +++lak    +++++p la+G+ilvg++  g++snv+ ylakGd+ lsv++  +s+l
  EHT98326.1  37 LLMLIMFGMGVTLNINDFKRVLTRPAPVLAVTFLHYLVMPLAAWALAK----LFNMPPDLAAGMILVGSVASGTASNVMIYLAKGDVVLSVTISSVSAL 131
                 89**********************************************....8999******************************************* PP

         SBF 102 lailltPlllyllaksleqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkgeliv 193
                 + ++ tPll+ +++ ++    ++v+++++++s++ +v+iP+ +G+++ + +        +  +++p+++++s++ +ll+i +++a++   i+
  EHT98326.1 132 VGVFATPLLTRFYVDTH----IQVDVAGMLLSIIRIVVIPIGLGLIIHHTFNG------LVRRVEPYLPAFSMVCILLIISAVVAGSQSFIA 213
                 *****************....*******************************9......9************************99887776 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6  18.1   1.9e-24   1.7e-20      15     240 ..      21     231 ..       7     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.9e-24
    SBF_like  15 slvPvfakaggtikaeyvikygValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaaldpelliGllllaalPtTvssnvvm 113
                 ++ P +      + +  +++y+ +li +  G++l+ +++++ l++    l v ++ +l++pl + al+ l++  ++p+l++G++l+ ++ +  +snv m
  EHT98326.1  21 YYSPTTF-----LGIGPWVAYLLMLIMFGMGVTLNINDFKRVLTRPAPVLAVTFLHYLVMPLAAWALAKLFN--MPPDLAAGMILVGSVASGTASNV-M 111
                 4444433.....334457899**************************************************6..6*********************7.6 PP

    SBF_like 114 tsqAgGnealalceavignllGvfltPalvqlllsgssvsvdyaevlkklllsvllPlvvGqvlqkifpklvkrlkkllkkvdslvlllivytsfstaf 212
                    A+G++ l++  ++++ l+Gvf+tP+l+ +++  ++++vd+a +l +++  v++P+ +G +++ +f+ lv+r++ +l  ++ +++lli+   ++ + 
  EHT98326.1 112 IYLAKGDVVLSVTISSVSALVGVFATPLLTRFYV-DTHIQVDVAGMLLSIIRIVVIPIGLGLIIHHTFNGLVRRVEPYLPAFSMVCILLIISAVVAGS- 208
                 789*******************************.68*****************************************************97777666. PP

    SBF_like 213 aqgaftsvsh.iillvifnvallLllvvl 240
                  q+++ sv + +i +v++  a     ++l
  EHT98326.1 209 -QSFIASVGVmVIAAVMLHNA-----IGL 231
                 .77777777632223332222.....333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2345.65
//
Query:       EHT98327.1  [L=541]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-44  149.9  21.8    1.6e-35  122.2   9.0    2.3  2  Na_Pi_cotrans  Na+/Pi-cotransporter
      2e-08   34.6   3.1    2.2e-07   31.2   0.8    2.5  2  PhoU           PhoU domain


Domain annotation for each model (and alignments):
>> Na_Pi_cotrans  Na+/Pi-cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   9.0   1.8e-39   1.6e-35       1     137 [.      13     147 ..      13     149 .. 0.98
   2 !   33.4   4.9   4.6e-12   4.1e-08      21      96 ..     160     249 ..     152     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 1.8e-39
  Na_Pi_cotrans   1 LfLfGmkllsegleklageklkkilekltsnrlkgvlvGllvTallqSSsattvmvvglvnaglltlkqaigvilGaniGttvtaqllslalklss 96 
                    L+++G+++ ++g+ ++ g+ l+++l++  +++ +++l+G++vT+l+qSS+att++v+++v+++l++l+ a++vilGa++Gt+++a +l  +++ls+
     EHT98327.1  13 LLVWGTHITRSGIMRVYGADLRRVLSRSVEKKPMAFLAGIGVTMLVQSSNATTLLVTSFVAQNLVSLTPALVVILGADVGTAIMARVL--TFDLSW 106
                    89**************************************************************************************..****** PP

  Na_Pi_cotrans  97 lalllllvgvllllfskkkklkklgeillglgllflglelm 137
                    l++l++++gv+++l  k++++ +lg+  +glgl++l+l+l+
     EHT98327.1 107 LSPLFIFFGVVFFLSRKQSRAGQLGRTSIGLGLILLALQLI 147
                    ***********99999988*******************997 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 4.6e-12
  Na_Pi_cotrans  21 lkkilekltsnrlkgvlvGllvTallqSSsattvmvvglvnaglltlkqaigvilGaniGttvtaqllsl..............alklss 96 
                    ++ ++++lt   ++ +l+G++++++  SS a+++++  l ++g++ +k a+ +++Gan+G+ + a +                  +kl+ 
     EHT98327.1 160 VQVLFSSLTGDVMLDALLGAVFAIISYSSLAAVLITATLTATGVIAFKVALCLVIGANLGSGLLAVINGSgsnaagkrvamgsfLFKLTG 249
                    6778999*********************************************************99985567666664444444444444 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.8   2.5e-11   2.2e-07       2      86 ..     340     422 ..     339     425 .. 0.85
   2 ?    3.0   0.1     0.015   1.4e+02       4      56 ..     447     498 ..     444     528 .. 0.63

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.5e-11
                 HHHHHHHHHHHHHHHHHHHCT-HHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SH.HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   2 rrmaeiveemlddalealeekdtela.revierddeidrlekeiersllealakrqplae.dlrellsllriardlERigDhavnia 86 
                  rm+++ e+mld  l++++ +    a r v+++dd++d l+ +i+ +l ++ ++   l+e d r++ ++++++ +lE  gD +++++
  EHT98327.1 340 LRMGDVLEQMLDTFLQVVRGES--RAeRTVRRLDDDVDVLYTAIKLYLARMPKE--DLSEeDSRRWGQIIEMSLNLEQAGDIIERMS 422
                 59***************98875..676999999***********8885555554..3333389*******************99886 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HG CS
        PhoU   4 maeiveemlddalealeekdtelarevierddeidrlekeiersllealak..rq 56 
                 ++e     l+++l+++ + d+  a+++++      r++ +i+r+    + +  +q
  EHT98327.1 447 LHEQLIANLRLSLSVFLSHDVTSAKRLRR---AKHRFRLKIRRYSHSHVDRlhQQ 498
                 67888899999*********999999954...44444444444444444222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4269.63
//
Query:       EHT98328.1  [L=270]
Description: hypothetical protein CKS_4679 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-15   57.6   0.9    1.4e-13   51.2   0.9    2.0  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
    0.00029   20.3   0.0     0.0017   17.8   0.0    2.0  1  Metalloenzyme  Metalloenzyme superfamily
  ------ inclusion threshold ------
      0.017   15.2   0.0       0.37   10.9   0.0    2.4  3  PglZ           PglZ domain


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.9   2.4e-17   1.4e-13       1     236 [.       3     208 ..       3     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.4e-17
                   EEEEEETT-BTTHHHHHGSTSHHHHHHHH..HSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGGGGGCTTS-H CS
  Phosphodiest   1 vlvislDGlradlldrlaellpnlaaLak..egvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededaprwwqgepi 95 
                   +++++lDGl+     +   ++  l+a     +g +++ l++  P+l+ p   +++TG  P + Gi++N +           + +         +e  
    EHT98328.1   3 TILVILDGLSHHVAHH---AMGYLHAECAqgKGHYYH-LTCALPSLSRPLYECILTGVAPVQSGIIHNGVN----------RLS---------HEQS 76 
                   6889999999888876...888888887744566666.*****************************8844..........233.........3344 PP

                   HHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBHHSBTCT.CSTTS........CHHHHHH.HHHHHHHHHCHTHSHHHHHCTSSESEEEEEECCC CS
  Phosphodiest  96 wdtaakarglkaaalfwpgsevdystyyylvsetppryleddfnakv........pledkvd.kavlqtwldaafakvvlekelekpdlllvyleet 183
                   +++ a+++gl++aa+ +    ++   y     +++p+++++d +++         ++   vd +   + ++++a+   +l+    +pd+ll++ +++
    EHT98328.1  77 VFHYAHDAGLTTAAAAY---HWISELY-----NRSPFEPARDRHTEApalpvqfgHF--YVDdSYPDSHLFEDAESL-RLR---HNPDFLLIHPMNI 159
                   55555555888665533...3444433.....7788888888888877777644311..222122233345555533.333...9************ PP

                   HHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EE CS
  Phosphodiest 184 DtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmad 236
                   D++gH++G  sp+ ++  r +D ++ + + +   +     +++++++DHGm+d
    EHT98328.1 160 DYAGHQHGLSSPQYRNRARMADGYLSQWMPGWLAE----GYQVMVTADHGMND 208
                   *****************************986666....7***********87 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.8e-07    0.0017     119     215 ..     136     230 ..       1     252 [. 0.67

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.8e-07
                    HHHHHHHHH.CC.-SEEEEEE-HHHHHHHTT-HH..HHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS........-----EEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 119 vaekaldailsgkfdlvvvniknaDmvGHtgdle..atiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdkqplTsHtlepVPiliv 212
                    ++e a +  l ++ d+++++  n D +GH+  l+  ++ +    aD  + + +    +++  ++vtADHg  +d  +     l + t   VP++++
     EHT98328.1 136 LFEDAESLRLRHNPDFLLIHPMNIDYAGHQHGLSspQYRNRARMADGYLSQWMPGWLAEGYQVMVTADHGMNDDRSH--GGMLPEET--TVPLFVF 227
                    444444444466689***************99873368999*****************************8777665..34444443..3666666 PP

                    STT CS
                    xxx RF
  Metalloenzyme 213 gkg 215
                    g+g
     EHT98328.1 228 GDG 230
                    665 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.076   4.6e+02       2      57 ..       2      58 ..       1      76 [. 0.69
   2 ?   -0.7   0.0      0.22   1.3e+03     116     139 ..      62      85 ..      56     103 .. 0.69
   3 ?   10.9   0.0   6.2e-05      0.37     144     169 ..     182     206 ..     136     208 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.076
        PglZ  2 kvfvIisDalryeaweelkqlLnkedrfeael.savlgvlPslTklgraallpgkkl 57
                k +++i D+l   +++  + +L+ e ++           lPsl +   + +l g ++
  EHT98328.1  2 KTILVILDGLSHHVAHHAMGYLHAECAQGKGHyYHLTCALPSLSRPLYECILTGVAP 58
                678999999999999999999988766444331444456777776666666666555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
        PglZ 116 yivhnkvDalgdkasteqksfeav 139
                 +i+hn v  l++++s  +   +a 
  EHT98328.1  62 GIIHNGVNRLSHEQSVFHYAHDAG 85 
                 589*********777666655554 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 6.2e-05
        PglZ 144 kelkelvkslleengykvlltaDHGf 169
                   l++ +   l e gy+v++taDHG 
  EHT98328.1 182 GYLSQWMPGWLAE-GYQVMVTADHGM 206
                 4667777777777.***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2196.09
//
Query:       EHT98329.1  [L=136]
Description: putative phosphate starvation inducible protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-16   58.3   2.2    7.6e-16   58.3   2.2    1.8  2  PsiE             Phosphate-starvation-inducible E
  ------ inclusion threshold ------
        1.9    8.5   3.7         55    3.8   0.0    3.2  3  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> PsiE  Phosphate-starvation-inducible E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       0.2   1.8e+03       3      31 ..      28      56 ..      26      63 .. 0.70
   2 !   58.3   2.2   8.4e-20   7.6e-16       4      68 .]      61     123 ..      58     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.2
        PsiE  3 diLllLillEllrtivaylkehriavrlv 31
                 iL++++  E  +   + + +++ a +++
  EHT98329.1 28 FILMVFLGKETVHLANVLFSTGEQASSYL 56
                58899998888888877777775555554 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 8.4e-20
        PsiE   4 iLllLillEllrtivaylkeh.riavrlvieaaiiavaRklIildlkdggyltllglaaailaLgl 68 
                 i + ++++E+++ iv+y++++ ++++r++++++i+a++R +I++   + ++ ++l ++aail+L++
  EHT98329.1  61 IVIYFLYFEFIALIVKYFQSGyHFPLRYFVYIGITAIIRLIIVD---HKNPFDTLCYSAAILLLVI 123
                 6788****************************************...*****************97 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.013   1.2e+02      23      36 ..      21      34 ..      17      37 .. 0.79
   2 ?    3.8   0.0    0.0062        55      11      22 ..      47      58 ..      47      63 .. 0.84
   3 ?    0.7   0.1     0.058   5.2e+02      23      39 ..     116     132 ..     115     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.013
                     XXXXXXXXXXXXXX CS
  Gram_pos_anchor 23 aGllallggllLlv 36
                     aGll+l++ l++++
       EHT98329.1 21 AGLLILAFILMVFL 34
                     78999998888865 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0062
                     XXXXXXXXXXXX CS
  Gram_pos_anchor 11 kTGengniflta 22
                     +TGe+++ +l++
       EHT98329.1 47 STGEQASSYLLI 58
                     6*********98 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.058
                      XXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  23 aGllallggllLlvkrR 39 
                      a++l+l+ +l L+ + R
       EHT98329.1 116 AAILLLVITLWLANSNR 132
                      78999999999977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1055.88
//
Query:       EHT98330.1  [L=170]
Description: chorismate pyruvate lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-39  134.2   0.0    3.8e-39  134.0   0.0    1.0  1  Chor_lyase  Chorismate lyase


Domain annotation for each model (and alignments):
>> Chor_lyase  Chorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.0   2.1e-43   3.8e-39       5     164 ..      12     167 ..       8     170 .] 0.91

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 2.1e-43
  Chor_lyase   5 atWqraddlesvapavsdWLleegsLtrrlkalaeelrvelLaeswi..tlrddeeqllaseealsgwvRevilkgddrPlvfartliprssletqgfd 101
                   W+  d    ++p+++dWL+ee s+trr+++ ++++rve++ e++i    + de  ll +++    w+Revil+gd++P++ +rtl+p s+l++ +  
  EHT98330.1  12 LNWLALDGAA-LSPSLRDWLMEEDSMTRRFEQHCQKVRVEPVREGFIhaDELGDEGALLPADQRF--WLREVILYGDEQPWLAGRTLVPESTLNGPEAM 107
                 5688777766.9***********************************655567888888888888..******************************** PP

  Chor_lyase 102 laqlGkraLGellfsdsdvkRdklevtrveaeleaLyaRRsrlsigaknvlvaelfL.tpriys 164
                 l+qlG+r+LG +lfs s + Rd +e + v    e+L++RRsrl +  k++l +elfL ++++y 
  EHT98330.1 108 LQQLGTRPLGRYLFSSSTLTRDFIEPGNV----ESLWGRRSRLRLSGKPLLLTELFLpASPVYR 167
                 ************************97765....679*********************9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1530.55
//
Query:       EHT98331.1  [L=294]
Description: p-hydroxybenzoate octaprenyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-66  222.3  25.0    7.5e-66  222.0  25.0    1.1  1  UbiA            UbiA prenyltransferase family
  ------ inclusion threshold ------
        5.9    6.5   6.7        1.2    8.7   0.6    2.3  2  DUF2518         Protein of function (DUF2518)
        8.3    6.3   6.6        6.4    6.7   0.2    3.2  3  COX2-transmemb  Cytochrome C oxidase subunit II, transmembran


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0  25.0   1.3e-69   7.5e-66       1     247 [.      28     270 ..      28     283 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.0 bits;  conditional E-value: 1.3e-69
        UbiA   1 llipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallglla 99 
                 ll+p+l++l+la +  p+l++l+++++g+++++aa++++Ndy+Dr+ D ++ert+ RPl+sG+++ kea+++++vl++++++l+ l  n+ t++l++++
  EHT98331.1  28 LLWPTLWALWLANRAMPPLPVLIVFVAGVFVMRAAGCVINDYADRKVDGHVERTKLRPLASGAVTAKEAKMLFVVLGLIAFGLV-LSMNLMTIMLSVVG 125
                 69**********************************************************************************.************** PP

        UbiA 100 lllyvvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllav 198
                 l+l++vY+  ++Kr+t+l++vv+g+afg++++++waav++sl+l ++l++la++++t+a+++ +++ dre+D+k+g+k++++++G+ + +i + ll ++
  EHT98331.1 126 LALAWVYP--FMKRYTHLPQVVLGAAFGWAIPMAWAAVSESLPLVCWLVFLANICWTVAYDTQYAMVDREDDLKIGVKSTAILFGQYDKLI-IGLLQLA 221
                 ********..*********************************************************************************.5555555 PP

        UbiA 199 lllallllllalllllylllalllaalallraarlvrrrdakkaakffl 247
                 +l +++l+++ l+l  +++++llla+ +++++ +l+++r ++++ ++fl
  EHT98331.1 222 TLGLMALVGTRLHLNGAFYWTLLLAGGLFVYQQKLIAKRARQACFQAFL 270
                 5555788**************************************9993 PP

>> DUF2518  Protein of function (DUF2518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.8      0.09   5.4e+02      35      60 ..      98     123 ..      93     131 .. 0.81
   2 ?    8.7   0.6   0.00021       1.2      19      63 ..     215     259 ..     204     265 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.09
     DUF2518  35 irFrlvGvtgFmlvLtaglfalslsl 60 
                 + F + G  +F lvL++ l+++ ls+
  EHT98331.1  98 MLFVVLGLIAFGLVLSMNLMTIMLSV 123
                 55888899999999999999887765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00021
     DUF2518  19 lvlavltilafilkwgirFrlvGvtgFmlvLtaglfalslslltr 63 
                 + l+ l+ l+ ++ +g+r  l G+  ++l+L++glf  +++l+ +
  EHT98331.1 215 IGLLQLATLGLMALVGTRLHLNGAFYWTLLLAGGLFVYQQKLIAK 259
                 67788999****************************999988765 PP

>> COX2-transmemb  Cytochrome C oxidase subunit II, transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.48   2.9e+03      21      29 ..      46      54 ..      37      57 .. 0.73
   2 ?    6.7   0.2    0.0011       6.4      23      35 ..      98     110 ..      93     112 .. 0.90
   3 ?    1.8   0.1     0.036   2.2e+02      23      36 ..     169     182 ..     157     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.48
                    HHHHHHHHH CS
  COX2-transmemb 21 LAmLFvFiA 29
                    L +L vF+A
      EHT98331.1 46 LPVLIVFVA 54
                    567889988 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0011
                     HHHHHHHHHHHHH CS
  COX2-transmemb  23 mLFvFiALiAYtL 35 
                     mLFv + LiA+ L
      EHT98331.1  98 MLFVVLGLIAFGL 110
                     **********987 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.036
                     HHHHHHHHHHHHHT CS
  COX2-transmemb  23 mLFvFiALiAYtLA 36 
                        vF+A i +t+A
      EHT98331.1 169 CWLVFLANICWTVA 182
                     5579********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2326.79
//
Query:       EHT98332.1  [L=808]
Description: glycerol-3-phosphate O-acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-24   84.7   0.0    7.9e-24   83.8   0.0    1.5  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
      0.097   11.0   0.1        0.2   10.0   0.0    1.4  2  DUF3292          Protein of unknown function (DUF3292)


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   8.8e-28   7.9e-24       2     134 ..     284     426 ..     283     427 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 8.8e-28
  Acyltransferase   2 vrvtglenlpe....kgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR...ksnaraagslenisel 88 
                      ++v g e++++    ++++++v++H+s++D+lll+++ly +++  +++i+a+ +l +++ +g+++r+lg++fi+R   +++ +   + e++ el
       EHT98332.1 284 INVNGGERVRQlaqdGHEIVYVPCHRSHMDYLLLSYVLYYQGL-VPPHIAAGINL-NFWPAGPIFRRLGAFFIRRtfkGNKLYSTVFREYLGEL 375
                      678888888889999***************************6.8*********5.5699*****************8888888899999999* PP

  Acyltransferase  89 leegklvviFPEGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                      + +g+ v +F EG+rsr+g+ll +k+G  ++ ++a+     + +++vP++i
       EHT98332.1 376 FTRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTLQAMlrggtRPITLVPIYI 426
                      ****************************************99******987 PP

>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.33     3e+03     630     641 ..     212     223 ..     178     225 .. 0.76
   2 ?   10.0   0.0   2.2e-05       0.2     340     403 ..     458     522 ..     451     526 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.33
     DUF3292 630 vklRdeLFNrLv 641
                 ++ R++LFNrL 
  EHT98332.1 212 LPARQDLFNRLL 223
                 47899*****95 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 2.2e-05
     DUF3292 340 vvklvtflvGfafFgdpiiqrglkllnrkvpnWqkllelrntlLkg..vPTnaQLtltL.LRiGEan 403
                 + kl  ++ G + Fg+p+    +++ln++vp+W++ ++  ++   g   PT + ++ t+  Ri Ea 
  EHT98332.1 458 LRKLRNLGQGYVNFGEPL--PLINYLNKRVPEWRESIDPIEAQRPGwlTPTANDIAATImVRINEAG 522
                 56888999*********9..79**************9987766666446888888877525777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 6423.43
//
Query:       EHT98333.1  [L=122]
Description: diacylglycerol kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-36  124.7   3.3    1.3e-36  124.5   3.3    1.0  1  DAGK_prokar  Prokaryotic diacylglycerol kinase


Domain annotation for each model (and alignments):
>> DAGK_prokar  Prokaryotic diacylglycerol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   3.3   7.3e-41   1.3e-36       1     101 [.      16     116 ..      16     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 7.3e-41
  DAGK_prokar   1 kyalkGlkaalkeernfrielvlavlvlllalllklsalewlllilaillvlvaEllNtaiEavvDlvspeyhelakraKDiaaaavlvaailavvvg 98 
                  +y+++Gl+aa+++e++fr+e+v+++++++la++l+++++ ++l+i a++lv+++E+lN+aiEavvD++++e+h+la+raKD+++aavl+a++la++v+
   EHT98333.1  16 GYSWQGLRAAWQHEAAFRQEAVISLAAIILACWLDVDTISRILMIGAVMLVMIVEVLNSAIEAVVDRTGQERHPLAGRAKDMGSAAVLLAIVLALFVW 113
                  59************************************************************************************************ PP

  DAGK_prokar  99 lli 101
                    +
   EHT98333.1 114 GTL 116
                  876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 917.32
//
Query:       EHT98334.1  [L=204]
Description: DNA-binding transcriptional repressor of SOS regulon [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-29  101.1   0.1    3.1e-29  100.5   0.1    1.3  1  LexA_DNA_bind  LexA DNA binding domain
    5.6e-14   51.9   0.5    8.2e-14   51.3   0.5    1.3  1  Peptidase_S24  Peptidase S24-like
     0.0016   18.7   0.0     0.0032   17.8   0.0    1.5  1  Rrf2           Transcriptional regulator
     0.0026   17.8   0.0      0.005   16.9   0.0    1.5  1  HTH_20         Helix-turn-helix domain
     0.0034   17.0   0.1       0.03   14.0   0.1    2.6  2  GntR           Bacterial regulatory proteins, gntR family
     0.0051   16.8   0.1      0.012   15.6   0.1    1.6  1  HTH_Crp_2      Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
       0.13   12.4   0.2       0.26   11.5   0.2    1.4  1  CSD2           Cold shock domain


Domain annotation for each model (and alignments):
>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.1   1.2e-32   3.1e-29       1      65 []       1      65 [.       1      65 [. 0.99

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.2e-32
                   XX---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CCG CS
  LexA_DNA_bind  1 mkkLTerQrevldlikasieetgypPsireiaralglkSpsaveehLkaLerKGyierdpgkpRa 65
                   mk+LT rQ++v dli+++i++tg+pP+++eia +lg++Sp+a+eehLkaL+rKG+ie+ +g++R+
     EHT98334.1  1 MKALTSRQQQVYDLIRDHINQTGMPPTRAEIAAQLGFRSPNAAEEHLKALSRKGVIEIVSGASRG 65
                   99**************************************************************7 PP

>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.5   3.2e-17   8.2e-14       1      68 [.     116     182 ..     116     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.2e-17
                    EXXSSTT.CCTXXTTXEEEEECTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SSTTSTEEEEC CS
  Peptidase_S24   1 rvpGdSM.eptlldGdlilVdkfsepkrGdivvfrlpgeeeayiKrviglpgdrvllasnneypplyin 68 
                    rv G SM + +++dGdl+ V+k++e+++G++vv+r+++e  +++Kr +++++ + ll++n + +p+ ++
     EHT98334.1 116 RVSGMSMkDIGIMDGDLLAVHKTQEVRNGQVVVARIDDE--VTVKRWKKQGSVVHLLPENTDFEPIIVD 182
                    699****99******************************..*******************988888775 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.3e-06    0.0032      22      70 ..      22      71 ..       3      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
                TCC-B-HHHHHHHHTS.-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSH CS
        Rrf2 22 eeepvsseeiaerqni.spsylekilakLrkaglvksvrGkgGGyrLakp 70
                ++ p + +eia++ +  sp+ +e  l+ L+++g+++ v G++ G+rL  +
  EHT98334.1 22 TGMPPTRAEIAAQLGFrSPNAAEEHLKALSRKGVIEIVSGASRGIRLLME 71
                55667889999999875899**************************9865 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06     0.005      20      57 ..      21      59 ..       3      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
                STCTTB-HHHHHHHHT.S-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 20 araegltaselaerld.lskntlsyHLrvLeeagLvevv 57
                 ++++ t +e+a++l+  s+n +  HL++L++ g +e v
  EHT98334.1 21 QTGMPPTRAEIAAQLGfRSPNAAEEHLKALSRKGVIEIV 59
                678899*********9788888**************975 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.2e-05      0.03       2      60 ..       8      62 ..       7      66 .. 0.87
   2 ?   -1.0   0.0      0.53   1.4e+03      16      37 ..      82     103 ..      80     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS.-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgV.srttvReALrrLeaeglverrqgr 60
                ++qvy+ +r++I++     G++ P+  e+aa++g+ s +   e L+ L+++g++e+ +g 
  EHT98334.1  8 QQQVYDLIRDHINQ----TGMP-PTRAEIAAQLGFrSPNAAEEHLKALSRKGVIEIVSGA 62
                689**********9....4555.7999*******967889999*************9986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.53
                 TSS-TTSB---HHHHHHHHTS- CS
        GntR  16 gelrpGdkLPsereLaaefgVs 37 
                 g++++G++L +++++ + ++V+
  EHT98334.1  82 GRVAAGEPLLAQEHIETHYKVD 103
                 7899999998888888888885 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.6e-06     0.012      18      60 ..      22      69 ..       4      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.6e-06
                EEEEHHHHHHHHHTT.SSHHHHHHHHHHHHHTTSEE..ET.EE.EEES CS
   HTH_Crp_2 18 ielpltqeelAsmlG.ltretvsrilseLkreglis..rg.rr.iril 60
                  +p t++e+A+ lG  ++      l++L+r+g+i+   g  r ir+l
  EHT98334.1 22 TGMPPTRAEIAAQLGfRSPNAAEEHLKALSRKGVIEivSGaSRgIRLL 69
                3589***********8899999**************843554459987 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2    0.0001      0.26      18      51 ..     136     171 ..     123     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
        CSD2  18 eklkgakdGdkVvveiteypdkkn..peGevievLG 51 
                 +k++++++G++Vv++i +  + k+   +G v+  L 
  EHT98334.1 136 HKTQEVRNGQVVVARIDDEVTVKRwkKQGSVVHLLP 171
                 47899************9865443348999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1622.66
//
Query:       EHT98335.1  [L=440]
Description: DNA-damage-inducible SOS response protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-39  134.5  32.2    3.3e-29  101.6  13.6    2.5  2  MatE             MatE
    1.6e-07   31.5  10.6    1.6e-07   31.5  10.6    4.9  5  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
  ------ inclusion threshold ------
      0.053   12.2   4.4       0.12   11.0   4.4    1.5  1  Tweety           Tweety


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6  13.6   5.5e-33   3.3e-29       1     160 [.      17     177 ..      17     178 .. 0.99
   2 !   38.5  10.6   1.5e-13   8.7e-10       3     152 ..     242     394 ..     241     404 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 5.5e-33
        MatE   1 Pialenllesllslidtllvgrl.gskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqil 98 
                 P++l+n+++ ll+l+dt ++g+l +++ l++v+++++++s++f++ll+l +++t l++qa+Ga++++++++al q li++ll + ++++l    +    
  EHT98335.1  17 PMILSNITVPLLGLVDTAVIGHLdSPVYLGGVAVGTTVTSFIFMLLLFLRMSTTGLTAQAFGAGDKTALARALAQPLIIALLAGSLFIALRHPVTALTT 115
                 9************************************************************************************************** PP

        MatE  99 slftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplny 160
                 ++++ +++vle+a+ +++i +l++pa++ +lv+ g+l g++++++p++++++++++ni+l+ 
  EHT98335.1 116 RFIGGEAAVLEQAALFIHIRWLSAPAMLANLVILGWLLGVQYARAPVILLVVGNVINILLDL 177
                 ***********************************************************986 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 1.5e-13
        MatE   3 alenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslf 101
                 +l  ll +l+++ +t+l  r+g++ +A+ +i l++  ++ + l g++ a+++++g a Gak+  r++ +   +   +l ++l+++l++ ++  qi+ l+
  EHT98335.1 242 LLRTLLLQLCFASLTVLGTRIGPDVVAVNAILLMFMTFTAYALDGFAYAVEAFAGEAHGAKDGSRLQLVWIAACRQALSVALFFSLVYAVCGYQIVALL 340
                 5778999******************************************************************************************** PP

        MatE 102 tqdeevlelakrylrililgipalalqlvlsgilrgagktk...vplyislisl 152
                 t+ +++ ++a r+l++ ++  ++ + + +l+g++ ga + +    +++i+++++
  EHT98335.1 341 TSIPALQQAADRFLPWQVVMPLVGVWCYLLDGMFIGATRGRemrNSMAIAALGY 394
                 ********************9999999999999999987541115566665555 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   8.5      0.33     2e+03      56     111 ..      46     109 ..      11     134 .. 0.65
   2 !   31.5  10.6   2.7e-11   1.6e-07       8      85 ..     138     217 ..     131     228 .. 0.87
   3 ?   -1.4   1.4      0.36   2.2e+03       5      16 ..     267     278 ..     230     296 .. 0.49
   4 ?   -0.5   1.8      0.19   1.1e+03      91     136 ..     319     370 ..     306     377 .. 0.66
   5 ?    0.2   6.7      0.12   6.9e+02      17      70 ..     369     421 ..     353     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
  Polysacc_synt_C  56 vGaaiatvlallvvavlnlyalrrllgikl.........ellrrllkpllaalvmgivvylllll 111
                       G+a++t+++ ++ ++l++ +++  +g+            l r l  pl++al+ g + ++l + 
       EHT98335.1  46 GGVAVGTTVTSFIFMLLLFLRMST-TGLTAqafgagdktALARALAQPLIIALLAGSLFIALRHP 109
                      478888888888888777555544.4444445788888777777778888888888775444443 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.7e-11
  Polysacc_synt_C   8 siiflslstvlssiLqglgrqkialkalvigalvklilnllli..plfgivGaaiatvlallvvavlnlyalrrllgikl 85 
                      s++ +  + v  + L g+ +++++++ lv+g +++++l l+l+   ++g+ Gaa+at++a+ +++++   ++ r l ++ 
       EHT98335.1 138 SAPAMLANLVILGWLLGVQYARAPVILLVVGNVINILLDLWLVlgLHWGVAGAAAATAIAEYATLLVGALMVWRVLALRG 217
                      45555566899999*****************************999*********************9999999998887 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.36
  Polysacc_synt_C   5 lalsiiflslst 16 
                      +a+ +i+l+++t
       EHT98335.1 267 VAVNAILLMFMT 278
                      223333333333 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.19
  Polysacc_synt_C  91 llkpllaalvmgivvylllllllglllla.......alalllavlvgalvYll 136
                      l + l+++lv +++ y ++ ll +++ l+        +++++ + vg+ +Yll
       EHT98335.1 319 LSVALFFSLVYAVCGYQIVALLTSIPALQqaadrflPWQVVMPL-VGVWCYLL 370
                      44667777777777777777777777766666664333666666.77777765 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.12
  Polysacc_synt_C  17 vlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvva 70 
                      +l ++++g  r ++ ++++++ a++   l+ll +p++g  G  +a+++ l++  
       EHT98335.1 369 LLDGMFIGATRGRE-MRNSMAIAALGYFLTLLTVPFIGNHGLWLAIAVFLALRG 421
                      55555566555554.677888888889999999999999997777777666544 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.4   2.1e-05      0.12     173     242 ..     123     197 ..     119     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.1e-05
      Tweety 173 elaeqvelvelyRWlaylllllldlviClvlllglarkskcllivvsvlgll.....alvlsWaslglelasavg 242
                 +++eq +l+  +RWl+  ++l+ ++++  +l +  ar   +ll+v  v+ +l     +l l W+++g+ +a+a++
  EHT98335.1 123 AVLEQAALFIHIRWLSAPAMLANLVILGWLLGVQYARAPVILLVVGNVINILldlwlVLGLHWGVAGAAAATAIA 197
                 6789999999****************************9999998888776422222566789999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3701.01
//
Query:       EHT98336.1  [L=70]
Description: putative stress response protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-23   80.4   8.0    7.6e-23   80.2   8.0    1.1  1  CsbD      CsbD-like
  ------ inclusion threshold ------
      0.079   13.0   1.6      0.086   12.9   0.4    1.6  1  COX4      Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   8.0   8.5e-27   7.6e-23       1      53 []       4      56 ..       4      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 8.5e-27
        CsbD  1 dkikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaakd 53
                d+++g+++q+kGk+Ke++Gk+T+d+ + +eGk+dql+Gk+q++yg+akd+a++
  EHT98336.1  4 DEASGNWKQFKGKMKEKWGKLTDDDMQVIEGKRDQLVGKIQERYGYAKDQAEK 56
                7899***********************************************96 PP

>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   9.6e-06     0.086      23      48 ..       4      29 ..       1      32 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.6e-06
        COX4 23 reqseeikaLkekekgdWkeLsleEk 48
                +e s  +k+ k k+k+ W +L++++ 
  EHT98336.1  4 DEASGNWKQFKGKMKEKWGKLTDDDM 29
                688999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 521.97
//
Query:       EHT98337.1  [L=173]
Description: transcriptional repressor of Zn transport system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-13   50.0   2.4    7.2e-13   48.7   0.0    2.0  2  FUR       Ferric uptake regulator family
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.034   14.1   0.0    1.8  1  MarR      MarR family
       0.04   13.8   0.0      0.072   13.0   0.0    1.5  1  TrmB      Sugar-specific transcriptional regulator TrmB
      0.055   13.4   0.0       0.37   10.7   0.0    2.2  1  HTH_5     Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.6e-16   7.2e-13       2     118 ..      20     138 ..      19     140 .. 0.89
   2 ?   -0.3   3.5      0.25   1.1e+03      78      97 ..     138     157 ..     127     171 .. 0.74

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.6e-16
                 TTHCHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTS.EEEEEESS.SSSEEEEEETTT--EEEE--HHHH CS
         FUR   2 aglklTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedg.esryelak.kehhdhlicekCgkviefkddeie 98 
                 +g++lT qR ++l++++ ++  +sa ++ ++l+  +p+    TVYr L++l e g+++++e +++  +   + + +++   l+c +C  v+e + +  e
  EHT98337.1  20 RGVRLTTQRAEVLRLMAGQPGSISAYDLLDQLRVSEPQAKPPTVYRALDFLLEQGFIHRVESNNSyVMCHHFDApAHTSVMLVCDRCAVVTEKQAQGAE 118
                 79***********************************************************995413444444447888899***************** PP

                 HHHHHHHHHTT-EEEEEEEE CS
         FUR  99 kiqeeiaekegfklvshrle 118
                 ki ++ a++  f l +  +e
  EHT98337.1 119 KIIASLAQEASFVLRHSVIE 138
                 ********999988876665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.25
                 EEEEEETTT--EEEE--HHH CS
         FUR  78 hdhlicekCgkviefkddei 97 
                  +h  ce+C +v+  +++e 
  EHT98337.1 138 EAHGLCENCAEVEACEQHEH 157
                 57899******999888765 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.5e-06     0.034       8      54 ..      31      83 ..      24      84 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.5e-06
                HHHHHHHSTT.EEHHHHHHHHTS-.....HHHHHHHHHHHHHTTSEEEEEETT CS
        MarR  8 iLrilyeqgp.lsvseLakklgvs.....kstvtrvldrLekkGlieRskspe 54
                +Lr+ + q++ +s  +L ++l vs     ++tv r+ld L ++G+i+R  s +
  EHT98337.1 31 VLRLMAGQPGsISAYDLLDQLRVSepqakPPTVYRALDFLLEQGFIHRVESNN 83
                5555554444477777777777753333389*****************99876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.072      37      59 ..      61      84 ..      24      93 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                HCHHHHHHHHHHCTSEEEESST.T CS
        TrmB 37 skvYevLrsLedkGlVerekgr.p 59
                ++vY++L  L++ G+++r++++  
  EHT98337.1 61 PTVYRALDFLLEQGFIHRVESNnS 84
                68*****************99843 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.2e-05      0.37       3      46 ..      27      77 ..      25      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
                HHHHHHHHHTT..SSEEHHHHHHHHTS-.....HHHHHHHHHHHHHTTSEE CS
       HTH_5  3 tRlkILklLae..gelcvcelaeelgls.....qstvShHLkkLreaGLVe 46
                +R ++L+l+a   g+ ++ +l ++l++s     ++tv + L +L e+G+++
  EHT98337.1 27 QRAEVLRLMAGqpGSISAYDLLDQLRVSepqakPPTVYRALDFLLEQGFIH 77
                69999******88889999*******995555558*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1483.05
//
Query:       EHT98338.1  [L=423]
Description: conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-81  273.1   3.7    3.4e-81  272.7   3.7    1.2  1  TraF_2         F plasmid transfer operon, TraF, protein
    1.6e-05   24.6   2.0    2.8e-05   23.8   0.4    1.9  2  PorP_SprF      Type IX secretion system membrane protein PorP
      6e-05   23.2  16.8     0.0089   16.2   0.5    3.7  2  OMP_b-brl      Outer membrane protein beta-barrel domain
     0.0064   16.2   0.1      0.026   14.2   0.0    1.9  2  OmpA_membrane  OmpA-like transmembrane domain
     0.0074   14.9   6.1      0.087   11.4   0.3    2.8  2  Toluene_X      Outer membrane protein transport protein (OMPP


Domain annotation for each model (and alignments):
>> TraF_2  F plasmid transfer operon, TraF, protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.7   3.7   9.4e-85   3.4e-81       2     280 .]      55     340 ..      54     340 .. 0.97

  Alignments for each domain:
  == domain 1  score: 272.7 bits;  conditional E-value: 9.4e-85
      TraF_2   2 lyNPAllalkarreddvglllplsvgvevgdvdnlvDkiDdlsdildgleaavnaasad....etq.vdeaaddlnalLedlggdgylkasagvglava 95 
                 l+NPAl++ ka+++d+v++++p s+g++++d+d++vDkiD+++d+++++++  ++as      ++  +++a  dl + L+dl+g++ ++a+agv++av+
  EHT98338.1  55 LANPALMT-KAKPDDNVSIIFP-SAGAQITDKDKMVDKIDNITDTVNRYQDLFDNASTLellrRIPeIQAASGDLANTLRDLRGNK-ANATAGVAIAVT 150
                 89******.*************.********************************998889874447*******************.************ PP

      TraF_2  96 ipndrlggalflkayleaiaradvleesdiqslsdlq.................eddlnssvyvkaaavtelglayakevslggqqlsvGvtpklqrld 177
                 +pn++l++a+++kay +a++ra+v +e di +l+ ++                 ++ l ss+++ aa  t++g+a+a+e++++g+++s+Gvtpklq+++
  EHT98338.1 151 VPNETLPFAFVTKAYGTAHVRANV-KEGDIVILQGVAdetfagipggvfglpnvQNLLGSSANGLAALNTDYGIAVAHEFTIAGHPVSIGVTPKLQKTW 248
                 ************************.************************************************************************** PP

      TraF_2 178 lykyvvsvndfddsdisdefddnektdtafnlDlGvlwvadn.yrlGltgkNLiepefdtkavgsdcsslegeielketYklepqvtlgaaydndqftl 275
                 ly+y++sv+++d++d++    ++++t+++fn+D+G+++v+ + ++lG+tg+NL++++++tk+v   ++       +++tY+++p vt+g+a+d++ +tl
  EHT98338.1 249 LYNYSASVYNYDKNDLR--DGRYRSTESGFNVDAGLATVFAEnWTLGVTGQNLVSRDLQTKEV---NG-------YQDTYEIRPLVTAGLAWDKGPVTL 335
                 *****************..99****************999888*******************8...66.......9*********************** PP

      TraF_2 276 avdlD 280
                 ++d+D
  EHT98338.1 336 TGDVD 340
                 ****9 PP

>> PorP_SprF  Type IX secretion system membrane protein PorP/SprF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.2   7.2e+02     212     241 ..      17      46 ..      14      56 .. 0.82
   2 !   23.8   0.4   7.9e-09   2.8e-05      75     255 ..     213     404 ..     207     416 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
   PorP_SprF 212 lnakvlyndklwaGasYRnneavsalvGfn 241
                 +na v+ +  l aG +Y+ ++   ++ G+ 
  EHT98338.1  17 FNALVFSSSALAAGTWYDARNDAMGGTGVA 46 
                 577778788999******999888888876 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 7.9e-09
   PorP_SprF  75 Gp.lsetgvnanyayhiklseksklsfGlqagfvqrnl.dknklgsq.denDpaiqeneiesnktypdvgaGllyys.dkfyaGlsvpnllssnldksd 169
                 G    +t   + +a+++ +   + +s+G++  + ++ l +++  + + d+nD     +   s+++ ++v+aGl     +++ +G++ +nl+s  l++++
  EHT98338.1 213 GLaALNTDYGIAVAHEFTI-AGHPVSIGVTPKLQKTWLyNYSASVYNyDKNDLRDGRY--RSTESGFNVDAGLATVFaENWTLGVTGQNLVSRDLQTKE 308
                 5556677777888888888.78888888888888887775555554335555544444..4899********9755549************87777777 PP

   PorP_SprF 170 es..esklkrkyyliaGykfdls......elklepsvlykyqegapqsldlnakvlyndklwaGasYR....nneavsalvGfnlkkslrlgysydyt 255
                  +  ++ ++++  ++aG   d        ++ l+ +  +k+qe++++ + ++a +++ d l + a+YR    +n+  +a +Gf l+  +  ++  d+ 
  EHT98338.1 309 VNgyQDTYEIRPLVTAGLAWDKGpvtltgDVDLTETHRFKSQENSQY-AGVGAEYRVLDWLQLRAGYRadmrSNDENVATAGFGLS-PFNNSVHLDLA 404
                 776799999999*********77**********************99.***********999999999888878888899999988.66555555555 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   9.9   0.00084         3      86     150 ..     220     294 ..      15     310 .. 0.90
   2 !   16.2   0.5   2.5e-06    0.0089     100     171 ..     315     391 ..     308     421 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00084
   OMP_b-brl  86 svpvnagyafnlsds.vlpyggaGlg...........ytkvevdvsgngasdsdtdfglglgaGveyaladnwslka 150
                 ++++++   f +++  v++ ++  l+           y++ + d ++    + +t++g+++ aG+ +++a+nw+l++
  EHT98338.1 220 DYGIAVAHEFTIAGHpVSIGVTPKLQktwlynysasvYNYDKNDLRDG--RYRSTESGFNVDAGLATVFAENWTLGV 294
                 455555555666555599999999999999985555555556666666..************************987 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.5e-06
   OMP_b-brl 100 s..vlpyggaGlgytkvevdvsgng.....asdsdtdfglglgaGveyaladnwslkaeYry.tdlksdadndlknntfq 171
                 +  ++p ++aGl++ k  v+  g+        +++ +++ ++g+G+ey++ d ++l+a+Yr  +     +d+++ + +f 
  EHT98338.1 315 TyeIRPLVTAGLAWDKGPVTLTGDVdltetHRFKSQENSQYAGVGAEYRVLDWLQLRAGYRAdMRS---NDENVATAGFG 391
                 456899999999988888886666668888888999999999999999999999999999875454...33444444443 PP

>> OmpA_membrane  OmpA-like transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.41   1.5e+03     129     172 ..     231     277 ..     222     287 .. 0.78
   2 !   14.2   0.0   7.3e-06     0.026     120     181 ..     346     409 ..     321     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.41
                    EEEEEEEEEEETTEEEEEEEEEESSSSSBTSTTS.....-S-EEEEE CS
  OmpA_membrane 129 llavGveyaitpelalrleYqylnnvgdlrkaak...kykpdievvs 172
                    +++  v   +tp+l+    Y y   v ++ k++    +y++  +  +
     EHT98338.1 231 IAGHPVSIGVTPKLQKTWLYNYSASVYNYDKNDLrdgRYRSTESGFN 277
                    56667778899999999999999999999998877777877666544 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.3e-06
                    EEEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSSSBTSTTS....-S-EEEEEEEEEEEE-S CS
  OmpA_membrane 120 knhdtkvslllavGveyaitpelalrleYqylnnvgdlrkaak..kykpdievvslglsyrfgq 181
                    + + ++ s+ ++vG+ey++++ l+lr+ Y+   + +d++ a+     +p +++v l+l+   gq
     EHT98338.1 346 RFKSQENSQYAGVGAEYRVLDWLQLRAGYRADMRSNDENVATAgfGLSPFNNSVHLDLAGSVGQ 409
                    445678899**********************999999998887556688888888888766666 PP

>> Toluene_X  Outer membrane protein transport protein (OMPP1/FadL/TodX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.2   0.00099       3.5      25      56 ..      38      71 ..      21     162 .. 0.82
   2 !   11.4   0.3   2.4e-05     0.087     328     353 ..     351     377 ..     327     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00099
                TTTTTTTTCTT.SCCHHHCTGGGGGG-SS-E.EE CS
   Toluene_X 25 rAyaGeaaaad.dasavvrNPAalalldeae.ls 56
                 A++G+++a     sav  NPA++++ +    +s
  EHT98338.1 38 DAMGGTGVASStYGSAVLANPALMTKAKPDDnVS 71
                59****99999788999********987644354 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2.4e-05
                 EEEEE.EEEEEEESSSSEEEEEEEEEE CS
   Toluene_X 328 Dtwsf.alGteYrvndkltLRaGvaYd 353
                 +++++ ++G+eYrv d l+LRaG+  d
  EHT98338.1 351 ENSQYaGVGAEYRVLDWLQLRAGYRAD 377
                 4444416****************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3240.63
//
Query:       EHT98339.1  [L=331]
Description: tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-91  306.1   0.0    2.7e-91  305.9   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
       0.15   11.5   0.0        0.3   10.5   0.0    1.4  1  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.9   0.0   3.1e-95   2.7e-91       2     304 ..      12     318 ..      11     324 .. 0.96

  Alignments for each domain:
  == domain 1  score: 305.9 bits;  conditional E-value: 3.1e-95
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEG CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaG 100
                 +aPm ++td+++R+++r ++ ++L++temvt+ ai++  k +++ +seee++  +a+Qlggsdpa la++A+l++++++de++lNvGCPs++v++g +G
  EHT98339.1  12 VAPMLDWTDRHCRYFHRLLTGDTLLYTEMVTTGAIIHG-KGDYLAFSEEEHP--VALQLGGSDPAALAQCAALAEQRDYDEVNLNVGCPSDRVQNGRFG 107
                 8*******************999***************.9999999999988..********************************************* PP

                 GGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESS..TTTC.HHHHHHHHHHCT.-SEEEEESS.......ECCCTT-C.G--CHHHHHHHHH-S.S-EE CS
         Dus 101 aaLlrkpdlvaqivkavvkaveiPvtvkirigid..deeenalelakiveaaG.aqaltvHgR.......traqnyeg.tadweaIkevkqavs.ipvi 187
                 a+L++++ lva+ +ka+++ v+iPvtvk+rigid  d++ ++ +++ +v + G ++ +++H+R       ++++n+e+ ++d+ +++++k++++ +++ 
  EHT98339.1 108 ACLMAEAGLVADGIKAMRDVVDIPVTVKTRIGIDeqDSYAFLTDFIGTVAERGgCDTFIIHARkawlsglSPKENREIpPLDYPRVYQLKRDFPqLTIA 206
                 **********************************999*******9987765544********************************************* PP

                 EESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTTTCHHH CS
         Dus 188 aNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkkaaelrr 286
                 +NG++k++e+a+ +l++   dgvm+gr+a++nP ++a   +v+++ +++++p+a+ +++v+++++++e+el ++++l ++++h+  +++g+++a+++rr
  EHT98339.1 207 INGGVKTLEEAKTHLQH--LDGVMMGREAYQNPGILA---HVDREVFGREQPAADPVAVVRAMYPYIEAELAKGTYLGHVTRHMLGLFQGIPGARQWRR 300
                 *****************..*****************9...9********************************************************** PP

                 HHHHHHHHHCCHHCHH.H CS
         Dus 287 eleevsdkeealenleea 304
                  l+e+++k  a+ ++ ea
  EHT98339.1 301 HLSENAHKPGADVRVLEA 318
                 *****9998775555444 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.4e-05       0.3      74     116 ..     203     244 ..     189     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.4e-05
                   SEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHH CS
  His_biosynth  74 ipvqvGGGIrsledveelleagadkviigtaavknpelikela 116
                   +++ + GG+++le++++ l+   d v++g +a +np ++ ++ 
    EHT98339.1 203 LTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPGILAHVD 244
                   7899***************98.**************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2829.60
//
Query:       EHT98340.1  [L=88]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-23   80.7  22.5    7.8e-23   80.5  22.5    1.0  1  Phageshock_PspG  Phage shock protein G (Phageshock_PspG)
     0.0028   17.7   2.4     0.0028   17.7   2.4    1.0  1  SpoIIM           Stage II sporulation protein M
  ------ inclusion threshold ------
      0.059   13.6  13.4      0.028   14.6  10.4    1.8  2  VirB3            Type IV secretory pathway, VirB3-like protei
       0.15   11.6   8.4       0.19   11.3   8.4    1.0  1  CbiQ             Cobalt transport protein
        1.1    9.7  13.8        1.7    9.0  13.8    1.3  1  DUF2628          Protein of unknown function (DUF2628)
        5.3    7.6  14.0        0.3   11.6   2.5    2.1  2  TraL             TraL protein
        6.3    6.5  12.8         11    5.7  12.8    1.5  1  DUF2244          Integral membrane protein (DUF2244)


Domain annotation for each model (and alignments):
>> Phageshock_PspG  Phage shock protein G (Phageshock_PspG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5  22.5   3.1e-26   7.8e-23       2      63 ..       1      62 [.       1      63 [. 0.98

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 3.1e-26
  Phageshock_PspG  2 lellfvlvflvmLlltGisllgvlaalvvavlvmlllgllalviKllPWLivivvavWlyra 63
                     ++++fv +f++mLlltG+sl+gv+aalvva++vm+++g++ l++K+lPWL+++v+avWlyr 
       EHT98340.1  1 MDIIFVFGFFLMLLLTGVSLIGVIAALVVATIVMFVGGMVMLIVKVLPWLLLAVAAVWLYRR 62
                     59**********************************************************97 PP

>> SpoIIM  Stage II sporulation protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.4   1.1e-06    0.0028      58     123 ..       4      79 ..       1      88 [] 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
      SpoIIM  58 llgiptilvllinGfv.lGavaalvaefgglllflllilPhgilelpaiiiagaaglrlgkal............rsrr 123
                 ++ ++++l+ll++G++ +G++aalv+    + +f+++++   +  lp +++a+aa   + +++            r+r+
  EHT98340.1   4 IFVFGFFLMLLLTGVSlIGVIAALVVAT--IVMFVGGMVMLIVKVLPWLLLAVAAVWLY-RRFftdedtrqrvlyRRRI 79 
                 666777788899999999***9999995..99*******99999999999999988666.4444666665445444444 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   5.8       0.2   5.2e+02      25      53 ..       5      33 ..       3      37 .. 0.46
   2 ?   14.6  10.4   1.1e-05     0.028      14      79 ..      14      85 ..      12      88 .] 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.2
       VirB3 25 lnllvsvilflvglslwillllvplhlvl 53
                +++++ ++l l g+sl  +++++++  + 
  EHT98340.1  5 FVFGFFLMLLLTGVSLIGVIAALVVATIV 33
                45555555555566665555444333222 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.1e-05
       VirB3 14 mllGvplelvllnllvsvilfl........vglslwillllvplhlvlrliakrDpqmfrvlllrlktrlrlrn 79
                +l Gv+l  v+++l+v++i+++        v + +w+ll++ +++l+ r+ + +D +++ ++  r + r+  rn
  EHT98340.1 14 LLTGVSLIGVIAALVVATIVMFvggmvmliVKVLPWLLLAVAAVWLYRRFFTDEDTRQRVLY--RRRIRRLERN 85
                678999999999999999999999999998899999999999********************..4444444444 PP

>> CbiQ  Cobalt transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.4   7.4e-05      0.19      15      80 ..       4      68 ..       2      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.4e-05
                HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTS---HHHHHHHCCCHCHHHHHHHHHHE....... CS
        CbiQ 15 iwlfllllalvlapnlvtlliiiallllllllvilprvlaqalilpllflllgllillfqlitteg 80
                i++f + l+  l++++ ++++i+al+++++++ +   v +++ +lp+l+l + ++ l + ++t e+
  EHT98340.1  4 IFVFGFFLM-LLLTGVSLIGVIAALVVATIVMFVGGMVMLIVKVLPWLLLAVAAVWLYRRFFTDED 68
                455555444.566788899999999999999999999********************998887665 PP

>> DUF2628  Protein of unknown function (DUF2628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  13.8   0.00068       1.7      31      90 ..       5      62 ..       3      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00068
     DUF2628 31 fgfiwLlyrklwlkalvllviavavsvvlavlgfsdavrlllalliaillgleanslyyl 90
                f f+++l+  l l +++l+++  a++v+++v+ ++  v l++++l ++ll+++a +ly+ 
  EHT98340.1  5 FVFGFFLM--LLLTGVSLIGVIAALVVATIVMFVGGMVMLIVKVLPWLLLAVAAVWLYRR 62
                44444444..56899*******************************************96 PP

>> TraL  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   7.4      0.21   5.4e+02      21      50 ..       3      32 ..       1      34 [. 0.82
   2 ?   11.6   2.5   0.00012       0.3      21      58 ..      30      67 ..      27      75 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.21
        TraL 21 alvillllvvgillgqfviglvlglllvll 50
                ++++++ +++ +l+g  +ig++++l+++++
  EHT98340.1  3 IIFVFGFFLMLLLTGVSLIGVIAALVVATI 32
                566778888999999999***999999876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
        TraL 21 alvillllvvgillgqfviglvlglllvlllrklkkgr 58
                a++++++ ++ +l+ +++  l+l++++v+l+r++  ++
  EHT98340.1 30 ATIVMFVGGMVMLIVKVLPWLLLAVAAVWLYRRFFTDE 67
                4566666666677779999999***********75554 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  12.8    0.0042        11      13      64 ..      21      71 ..       4      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0042
     DUF2244 13 lllllalalvslvialafllaGawpvlpFaglevlalalafrvsarhardrE 64
                + +++al+++ +v+ ++ +++  + vlp+++l+v+a++l  r ++ + + r+
  EHT98340.1 21 IGVIAALVVATIVMFVGGMVMLIVKVLPWLLLAVAAVWLYRR-FFTDEDTRQ 71
                4456666666666666667889999************98654.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 635.77
//
Query:       EHT98341.1  [L=327]
Description: quinone oxidoreductase, NADPH-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-27   95.3   0.9    3.5e-27   95.0   0.1    1.5  2  ADH_zinc_N    Zinc-binding dehydrogenase
    1.4e-16   61.8   0.0    2.2e-16   61.1   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    4.7e-08   32.9   0.0    1.5e-07   31.3   0.0    1.9  3  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1   6.5e+03      65      90 ..      65      90 ..      63     101 .. 0.73
   2 !   95.0   0.1   5.8e-31   3.5e-27       1     124 [.     152     279 ..     152     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
                SSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N 65 cvGsgatleaalkllkpgGrlvvvGg 90
                ++G+ + + +a++  kpg r+v++ +
  EHT98341.1 65 AAGVVTRVGSAVTRFKPGDRVVYCQA 90
                56666777778888888888888865 PP

  == domain 2  score: 95.0 bits;  conditional E-value: 5.8e-31
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE... CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee... 96 
                 gvGl+a+q+AkalGa+ i++++s+ek+ lak  Ga ++iny+++d+ +r+ eltgg++v vv++ vG +at+ea+l++l+++G +v +G  +g+ +   
  EHT98341.1 152 GVGLIACQWAKALGAHLIGTVGSAEKATLAKNAGAWATINYQQEDIAQRVSELTGGKKVGVVYDSVG-KATWEASLDCLRRQGLMVSFGNASGPVTnvd 249
                 9****************************************555***********************.**********************777766645 PP

                 EEHHH....HHHTT-EEEEE-SSCHHHHHHHH CS
  ADH_zinc_N  97 fdlrn....lllkeksilGsllgslreefkea 124
                 +++ n    l+ ++ s+ G +  +  +e+++a
  EHT98341.1 250 LSILNkkgsLFVTRPSLFGYITNR--QELETA 279
                 333334555777777777777777..555554 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   3.7e-20   2.2e-16       2     129 ..     185     321 ..     184     325 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.7e-20
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----....S-EEE-CHHHCTTT-EEEE--GGG...-....... CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp...lsaallkpakkrkgrsvkyeflfsmkas....... 84 
                   GA+  i+y++ed++    + tgg++v vv+d+vg++++ easl++l+ +G +vs g+ +   +  +l+ ++k +++  v+         s       
    EHT98341.1 185 GAWATINYQQEDIAqrvsELTGGKKVGVVYDSVGKATW-EASLDCLRRQGLMVSFGNASgpvTNVDLSILNK-KGSLFVTRP-------Slfgyitn 272
                   99************************************.*******777******96544542222222222.333333333.......33334432 PP

                   ...-HHHHHHHHHHHHHHH----EEEE..EEGGGHHHHHHHHHSS--SS CS
  ADH_zinc_N_2  85 ..aqadileelaalieeGklrpvvdrv..fpleeaaeAhrylesgrarG 129
                     + + + +el+ l+++G++++ v ++  f l+ea +Ah++les+++ G
    EHT98341.1 273 rqELETASAELFSLLASGAIKVDVPEQqkFALKEASRAHQLLESRATQG 321
                   343344459************98874337*****************999 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.4e-11   1.5e-07       2      61 ..      29      87 ..      28     130 .. 0.94
   2 ?   -2.4   0.0      0.73   4.4e+03      33      50 ..     162     179 ..     154     208 .. 0.68
   3 ?   -4.1   0.0       2.5   1.5e+04      47      61 ..     198     212 ..     195     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.4e-11
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61
                +e+ ++ +a g++  D  + +g   ++ ++p  lG E++G+v  vg++v+++k GdrVv 
  EHT98341.1 29 NEIQVENRAIGMNYIDTYVRSG-LYPTGHFPSGLGTEAAGVVTRVGSAVTRFKPGDRVVY 87
                7999***************999.89*********************************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.73
                 EE---EEEEEEEEESTT- CS
       ADH_N  33 lilGHEivGeveevgpev 50 
                  +lG  ++G+v ++++++
  EHT98341.1 162 KALGAHLIGTVGSAEKAT 179
                 456666666666655544 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 2.5
                 STT-CS--TT-EEEE CS
       ADH_N  47 gpevkklkvGdrVvv 61 
                  ++v++l+ G++V v
  EHT98341.1 198 AQRVSELTGGKKVGV 212
                 567888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2515.74
//
Query:       EHT98342.1  [L=468]
Description: replicative DNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-111  370.7   0.4   4.6e-111  370.2   0.4    1.2  1  DnaB_C    DnaB-like helicase C terminal domain
      1e-35  121.9   0.0    2.2e-35  120.8   0.0    1.6  1  DnaB      DnaB-like helicase N terminal domain
    7.4e-10   38.7   0.0    1.2e-09   38.0   0.0    1.3  1  AAA_25    AAA domain
    0.00021   20.7   0.0    0.00065   19.1   0.0    1.8  1  ATPase    KaiC
     0.0039   17.3   0.0       0.03   14.5   0.0    2.3  1  AAA_33    AAA domain


Domain annotation for each model (and alignments):
>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.2   0.4  1.3e-114  4.6e-111       1     255 []     203     459 ..     203     459 .. 0.97

  Alignments for each domain:
  == domain 1  score: 370.2 bits;  conditional E-value: 1.3e-114
                 SBXSSTHHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   1 GlstgfkdLDkltsGlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklkeedweklteaieel 99 
                 G++tg++dL+k t Glq++dlii+AarpsmGkt++a+n++enaa+ +++pv++fslem++eq+++R+l+s +++d++++rtg+l++edw++++ +++ l
  EHT98342.1 203 GIDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPSEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGIL 301
                 9*******************************************99999*********************************************99876 PP

                 .HHSEEEEEEXSSXCHHHHHHHHHHHHHH.TTEEEEEEEEGGGTBTSCSSSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXXHHHHC CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 100 .seaklfiddtpaltvseirskarrlkke.kglgliviDyLqlmegseekenreqevseisrsLkalakelnvpvialsqLsravesredkrPvlsDLr 196
                  ++ +++idd+++lt++e+rs+arr+ +e +gl+li+iDyLqlm++++ ++nr+ e++eisrsLkalakelnvpv+alsqL+r++e+r+dkrPv sDLr
  EHT98342.1 302 lEKKNMYIDDSSGLTPTEVRSRARRIYREnGGLSLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLR 400
                 16678********************999989**************987699************************************************ PP

                 CTTSCCCCXSEEEEEEECCHHHHHHCHHCEEEEEEEEETTSXXEEEEEEEETTTTEEEX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 197 eSgsieqdADvvlflyrdeyykedseekgkaeiiiaKhRnGptgtvklafekeytrFen 255
                 eSgsieqdAD+++f+yrde+y+e+s+ kg+aeii+ K+RnGp+gtv+l+f+++ +rF+n
  EHT98342.1 401 ESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGTVRLTFNGQWSRFDN 459
                 **********************999999*****************************97 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   6.1e-39   2.2e-35       2     103 .]      24     125 ..      23     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 6.1e-39
                 HHHHHHHHHHHHHHHHHSTTHHHHHHCC--GGGSSSHHHHHHHHHHHHHHHTTTS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC-S-CCCHHHHHHH CS
        DnaB   2 ppqsieaEqavLgalLldpeaidevadilkpedFyepahrliFeailelyekgepiDlvtvkeelekkgkledvggaaylaelvaavpsaanieeyaei 100
                 pp+s+eaEq+vLg+l+ld+e++d+v++ + ++dF++++hrliF  +++l e+++piDl+t++e le++g+le +gg+aylael++++psaani +ya+i
  EHT98342.1  24 PPHSLEAEQSVLGGLMLDNERWDNVSERVVANDFFNRSHRLIFSEMQRLLENSKPIDLITLSESLETRGELEMAGGFAYLAELAKNTPSAANIGAYADI 122
                 8************************************************************************************************** PP

                 HHH CS
        DnaB 101 vke 103
                 v+e
  EHT98342.1 123 VRE 125
                 *97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   3.3e-13   1.2e-09      29     191 ..     218     384 ..     199     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.3e-13
      AAA_25  29 llpagelallaGapgtGKttlaldlalava..tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal..........rddarllvldlagv..es 113
                 l  + +l+++a++p  GKtt+a++l+   a  ++k           +Vl+ s+E++ +++  R+ a +  +          +d ++ ++   +g   e+
  EHT98342.1 218 L-QRSDLIIVAARPSMGKTTFAMNLCENAAmlQDK-----------PVLIFSLEMPSEQIMMRMLASLSRVdqtrirtgqlDDEDWARISGTMGIllEK 304
                 4.6899********************888842444...........89******************998888888888887443333333333333456 PP

      AAA_25 114 lpLfakdrggtlltadvdaleaaieevegvrlvviDplsralgg..densnsdvgalvealeriarrtgaavllvhHvgK 191
                  +++ +d+ g + t++  + ++  +e  g+ l+ iD l+ +     + n+  +++++   l+ +a+++++ v+++ ++++
  EHT98342.1 305 KNMYIDDSSGLTPTEVRSRARRIYRENGGLSLIMIDYLQLMRVPalSDNRTLEIAEISRSLKALAKELNVPVVALSQLNR 384
                 78999999999999998888888888777********99877664566766778*******************9988765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.8e-07   0.00065       2      68 ..     205     270 ..     198     287 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-07
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenak 68 
                  tg + l + +  G+ +   + ++  p  GKt+fa++   + a+  ++p+++ ++e p+e++  ++ 
  EHT98342.1 205 DTGYQDLNKKT-AGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPSEQIMMRML 270
                 45556666664.9************************************************998875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.5e-06      0.03       8      96 ..     230     332 ..     223     407 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.5e-06
      AAA_33   8 pGsGKstlaerllkklgavllssdtlrrrlfg...............tdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr.rerarflk 90 
                 p +GK+t+a +l+ +++a l ++++l++ l+                 dq+++ +  ++ d+ +++++++  + l++++ +i d+  l++ + r+r ++
  EHT98342.1 230 PSMGKTTFAMNLC-ENAAMLQDKPVLIFSLEMpseqimmrmlaslsrVDQTRI-RTGQLDDEDWARISGTMGILLEKKNMYIDDSSGLTPtEVRSRARR 326
                 789**********.778888888886666655433333333333432222222.233355556667779999999999999999999998666789999 PP

      AAA_33  91 larrlg 96 
                 + r+ g
  EHT98342.1 327 IYRENG 332
                 988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3181.17
//
Query:       EHT98343.1  [L=163]
Description: AsnC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-18   65.6   0.4    4.8e-18   64.9   0.4    1.4  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    6.2e-13   48.3   0.3    1.4e-12   47.2   0.3    1.7  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    1.1e-11   44.0   2.2    1.3e-11   43.8   1.0    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00044   20.2   0.4      0.092   12.7   0.0    2.5  2  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.004   17.1   0.5      0.014   15.3   0.1    2.0  2  MarR            MarR family
  ------ inclusion threshold ------
      0.054   13.8   0.3        8.8    6.8   0.1    2.2  2  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.4   1.6e-21   4.8e-18       1      74 [.      70     143 ..      70     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.6e-21
                     EEEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepgh.peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     ++v+l  +h ++++++f + +++ + ++ +y++tGd+dyllkv+v+dl++l++++++ la +  v +++ts+vl 
      EHT98343.1  70 IEVRLI-NHtADYVDSFHRMVEQEDAIIDAYKTTGDADYLLKVAVADLASLSAVISQLLAGHQSVSHVKTSVVLG 143
                     789999.666***************************************************************95 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.3   4.7e-16   1.4e-12       2      39 ..       5      42 ..       4      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 4.7e-16
  HTH_AsnC-type  2 DeiDrkILeaLqedaRisyaeLAervGlSestvlrRvr 39
                   D++D+kIL +Lq ++R+++++L++ vGlS+s++ rR  
     EHT98343.1  5 DDYDLKILTLLQSNGRLTNQKLSDLVGLSASQCSRRRI 42
                   9***********************************65 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   1.0   4.4e-15   1.3e-11       2      47 ..       5      50 ..       4      50 .. 0.95
   2 ?   -2.5   0.0       1.3   3.9e+03      38      46 ..     142     150 ..     138     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 4.4e-15
      HTH_24  2 detdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                d++d+kIL lLq n+r++++ L++ +glS s ++rr  +Le++ lI
  EHT98343.1  5 DDYDLKILTLLQSNGRLTNQKLSDLVGLSASQCSRRRINLEQANLI 50
                89**********************************9999998887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
      HTH_24  38 lkrLeeeGl 46 
                 l rL+e+Gl
  EHT98343.1 142 LGRLKENGL 150
                 678999986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.1e-05     0.092      21      52 ..      20      51 ..       5      59 .. 0.88
   2 !    5.4   0.1     0.006        18      25      52 ..     125     152 ..     100     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis 52
                +lt++ l++++Gl+ +++sr    L++++li 
  EHT98343.1 20 RLTNQKLSDLVGLSASQCSRRRINLEQANLIL 51
                79**************************9995 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.006
                 HHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2  25 eelAsmlGltretvsrilseLkreglis 52 
                 + lA +  ++ + +s +l++Lk+ gl  
  EHT98343.1 125 QLLAGHQSVSHVKTSVVLGRLKENGLMM 152
                 678999999****************975 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   4.9e-06     0.014       6      47 ..       9      50 ..       7      54 .. 0.96
   2 ?   -0.6   0.0      0.44   1.3e+03      23      47 ..     127     151 ..     111     156 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.9e-06
                HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                ++iL++l ++g l++++L + +g+s s  +r    Le+++li
  EHT98343.1  9 LKILTLLQSNGRLTNQKLSDLVGLSASQCSRRRINLEQANLI 50
                68**************************************99 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.44
                 HHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  23 LakklgvskstvtrvldrLekkGli 47 
                 La + +vs   ++ vl rL ++Gl+
  EHT98343.1 127 LAGHQSVSHVKTSVVLGRLKENGLM 151
                 4555555555667777788888876 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0074        22       8      55 ..       6      50 ..       1      53 [. 0.87
   2 ?    6.8   0.1     0.003       8.8      14      55 ..     113     151 ..     100     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0074
                HHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2  8 eyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55
                +y l++l+ L+++ +   ++ +++++ +++s+s +++   +L++a+l+
  EHT98343.1  6 DYDLKILTLLQSNGR---LTNQKLSDLVGLSASQCSRRRINLEQANLI 50
                677888888877776...99************************9998 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.003
                 HHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2  14 llyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55 
                 +++La+ +    v s+ +a +q++s++  + +l +L+++gl 
  EHT98343.1 113 VADLASLSA---VISQLLAGHQSVSHVKTSVVLGRLKENGLM 151
                 445555555...78999***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1162.25
//
Query:       EHT98344.1  [L=204]
Description: hypothetical protein CKS_4696 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-33  113.6  16.5    9.3e-33  113.3  16.5    1.0  1  YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family


Domain annotation for each model (and alignments):
>> YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family COG1284
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3  16.5   5.2e-37   9.3e-33       3     180 ..      19     194 ..      17     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 5.2e-37
  YitT_membrane   3 llivlgsllyAlginlfllpnkiatGGvtGialilnyltglpigilvlilNipllilgykilgkkfvlktlvailllsvfldllalppvkpltndp 98 
                    l i+lg+l++++g+  +l ++  +tG + G+a +++yl  l++g +++++N+p+  l++k +g +f+lkt++a+ l+s+f++l     ++  t +p
     EHT98344.1  19 LAILLGTLMVSFGVL-MLKQAGALTGSTAGLAFLISYLSPLSFGSVFFVINLPFYWLAVKRMGWEFTLKTFCAVGLVSLFTHLH-PLFMHFSTLNP 112
                    789**********85.567788889***********************************************************.667777899** PP

  YitT_membrane  99 llaaifggvllGiGvGivfragastGGtdiialilnkktglsvgkilliidlvivllagfvfdietalyslitlfvvskvid 180
                    ++aa+fg v++GiG  ++fr++as GG+ i+al+l+ ++g+  gk+ +++d ++vl+++fv+++   l s+ + ++  ++i 
     EHT98344.1 113 FYAALFGNVIMGIGFIVLFRHKASLGGINILALWLQDRFGIRAGKLQMAVDTCVVLASLFVVSLPMLLASIAGAVILNMIIA 194
                    ***************************************************************************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1504.97
//
Query:       EHT98345.1  [L=397]
Description: tyrosine aminotransferase, tyrosine-repressible, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-83  280.6   0.0    2.2e-83  280.4   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.4   0.0   1.2e-87   2.2e-83       2     363 .]      27     393 ..      26     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 280.4 bits;  conditional E-value: 1.2e-87
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgd 94 
                    +++nL+++ y  ++g  p+l++va ae +  ++ +++  y+p++gl ++++a+a +l+  ++++lk  + a++++++G+gal + ++fl +++p++
     EHT98345.1  27 HKVNLSIGLYYNEQGIiPQLQAVADAEEQLRAEPQQASLYLPMEGLNTYRNAIAPLLFgaDHPVLKAGQIASIQTLGGSGALKVGADFLKRYFPQS 122
                    79***************************9***************************99************************************* PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    +++v+dpt+++++ i++ +g++v +yp+y++e+ ++ ++a++  lk++p++++   v+l+ ++hNPtG+++t +++ + +++ k+++l++f+D aY
     EHT98345.1 123 NVWVSDPTWENHIAIFNGAGFKVKTYPWYDPETNGVRFDAFLSTLKTLPKQSI---VLLHPCCHNPTGADLTNAQWNETVAVLKAQELIPFLDIAY 215
                    *****************************************************...**************************************** PP

                    TTCBSSSS.HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...H CS
  Aminotran_1_2 191 agfvfgsl.davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...e 273
                    +gf  g + da+a ra ++++   l+ +s+sK f+l+GeRvG +++++       +v+ ql+  +r+ +s  ++ ++++va +l+da lk++   e
     EHT98345.1 216 QGFGAGMEeDAYAMRAVAAAGLPALVSNSFSKIFSLYGERVGGLSVVCdsaeeasRVLGQLKATVRRNYSspPNFGAQVVARVLNDATLKANwlaE 311
                    ******879*************************************999******************************************9**** PP

                    HHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHH..HHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskk..LleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    +e+mr r++++r+ l++ +  +    ++++l +q gmf++t+lsa+      ++  L+ee+g+y++         ++R++vAgl+++++ +++ea+
     EHT98345.1 312 VEAMRLRIIDMRQALVQVMSTAlpgkNVDYLLKQRGMFSYTGLSAQ------QVdrLREEFGIYLVG--------SGRMCVAGLNSKNVHQVAEAF 393
                    *******************999************************......7777***********........9*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3055.23
//
Query:       EHT98346.1  [L=276]
Description: polysaccharide biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-06   27.8   5.1    2.1e-06   27.8   5.1    3.8  3  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
  ------ inclusion threshold ------
       0.14   12.4   1.3       0.31   11.2   0.1    2.2  2  S1FA             DNA binding protein S1FA


Domain annotation for each model (and alignments):
>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.8  10.9         2   1.8e+04       5      15 ..      74      84 ..       1     122 [. 0.46
   2 ?   -3.3   7.1      0.97   8.7e+03      46      51 ..     113     118 ..      73     175 .. 0.48
   3 !   27.8   5.1   2.4e-10   2.1e-06       2      83 ..     182     263 ..     181     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: -6.8 bits;  conditional E-value: 2
  Polysacc_synt_C  5 lalsiiflsls 15
                     la+s if+s++
       EHT98346.1 74 LAISSIFISVQ 84
                     23333333333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.97
  Polysacc_synt_C  46 nlllip 51 
                      ++++ip
       EHT98346.1 113 SWIFIP 118
                      333333 PP

  == domain 3  score: 27.8 bits;  conditional E-value: 2.4e-10
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrllgi 83 
                      + +l+l++ f+++ tv    +   g  +++lk +++ +l+ + l+++li  +gi+Ga ++  l++l+++ ++ y+ +r +  
       EHT98346.1 182 ITLLSLATSFSAMGTVAYRFMVKEGGFDYLLKKIICLVLISIPLSWWLIQGYGIMGATWSVFLSELLSLTVMNYFFKRGVIQ 263
                      568999*******************************************************************999996655 PP

>> S1FA  DNA binding protein S1FA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.5e-05      0.31       7      44 ..      22      59 ..      19      64 .. 0.93
   2 ?   -2.2   0.2      0.51   4.6e+03      17      27 ..     150     160 ..     146     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
        S1FA  7 lnPGlivllvvggllllflvgnyvlyvyaqktlPprkk 44
                lnP  + l v++  l+ +++  y +y   q ++Ppr  
  EHT98346.1 22 LNPLWLTLSVITVTLVPYVIKRYCFYQQHQEQFPPRET 59
                899999*****************************976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.51
        S1FA  17 vggllllflvg 27 
                  ++ll+lf+v+
  EHT98346.1 150 AVSLLMLFIVA 160
                 56788889886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2033.39
//
Query:       EHT98347.1  [L=316]
Description: hypothetical protein CKS_4700 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-39  134.6   0.1    6.2e-39  134.2   0.1    1.1  1  ATPgrasp_TupA  TupA-like ATPgrasp


Domain annotation for each model (and alignments):
>> ATPgrasp_TupA  TupA-like ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.1   3.5e-43   6.2e-39      10     240 ..      57     290 ..      47     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 3.5e-43
  ATPgrasp_TupA  10 drnleetklvdKkvakrliaskvGekviiPtlsvetdletidfevikesiViKpthdsGsrgvlevkneldilkvk...skllkylerndlkekre 102
                    +  + +  l dK+ ++ +ia+k+G+++ iP l + td  t++  +  +  ViKp h+s  + ++++  e d l+++   ++   +l+ ++++e re
     EHT98347.1  57 GDYQLYARLSDKYSVRDYIAEKIGNDYLIPLLHDTTDPTTLNDLTRWQGTVIKPNHASNMVEIVLE--EPDALRKQqiiHNCYSWLKTDFANEARE 150
                    55678999*************************************************988776654..4455555545589999************ PP

  ATPgrasp_TupA 103 kkykdvkpriilEkklkkepavelkDyklycFygk....kvaiqvdiqr.fpeskkclytadgkklptagkykavyegevekpgvleemielAeti 193
                     +y+ +kpri++E+++ + +  ++ Dyk+++F+ +    +  +qv  +r  p+ + ++y  +  +   ++   +++ + +     le  + l +t+
     EHT98347.1 151 IHYRYIKPRILVEQYIGDGKSAPV-DYKFHMFNKRdgnfEYVLQVIYNRcQPQLSMNFYVNNLSEAYHKIRDTGLDVSPIM--PSLERALALSKTL 243
                    ******************999999.*******8652111334566666635899******999999998888888888875..579********** PP

  ATPgrasp_TupA 194 sseipfvRvDlyksgdkvyfGElTfkpgngfedfepkeyDelLGdkf 240
                    +s++++vRvD y  ++++yfGElTf+pg g+ +  ++  D+++G+ +
     EHT98347.1 244 ASDFDYVRVDWYIHDQHIYFGELTFTPGAGMVTGLDRGLDKMMGEMW 290
                    ********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2197.37
//
Query:       EHT98348.1  [L=93]
Description: hypothetical protein CKS_4701 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-42  142.4   5.7      4e-42  142.3   5.7    1.0  1  YjcB         Family of unknown function
     0.0043   16.4   0.1     0.0052   16.1   0.1    1.1  1  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> YjcB  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   5.7   4.4e-46     4e-42       1      92 []       1      92 [.       1      92 [. 1.00

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 4.4e-46
        YjcB  1 matltaslvllrwellsavlmflastlnirlrksdykalavvvsglGiaasCwfvtgllGitlaalalaeiwentkdvlvevmsktPadypm 92
                matlt+s++++rwellsav+mf+astl+ rlr+ +++++a++++g+G++ sCwfvtgl+Gitl++++++++++ +k+v++++ms++Pa++pm
  EHT98348.1  1 MATLTTSFLVMRWELLSAVMMFFASTLKTRLRQDSHHVMAFLCGGVGVGLSCWFVTGLMGITLSMENVHHFLSVSKEVFIDMMSRAPANWPM 92
                9******************************************************************************************9 PP

>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.8e-07    0.0052      72     123 ..      24      74 ..      14      87 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.8e-07
                  HHHHHHHTT.--SHHHHH.HHHHHHHHHHHHHHT-HHHHHHHHCTTTSTSS-- CS
  Voltage_CLC  72 gsglsrllklsrndrdrr.lvaaGaAAGiAAaFnaPlgGvlfalEevsrefsl 123
                  +s l  +l+  ++++  + ++  G++ G+++ F + l G+ +++E v++ +s+
   EHT98348.1  24 ASTLKTRLR--QDSHHVMaFLCGGVGVGLSCWFVTGLMGITLSMENVHHFLSV 74 
                  233333344..33334446999**************************88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 740.01
//
Query:       EHT98349.1  [L=141]
Description: SoxS family regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-22   79.4   3.1    1.8e-22   79.4   3.1    1.8  3  HTH_18    Helix-turn-helix domain
    2.2e-18   65.9   4.5    3.2e-12   46.2   0.7    2.5  3  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
  ------ inclusion threshold ------
      0.021   14.9   0.1        0.1   12.7   0.0    2.2  2  HTH_3     Helix-turn-helix
      0.088   12.7   0.0       0.11   12.5   0.0    1.1  1  CBM9_1    Carbohydrate family 9 binding domain-like


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0045        20      40      58 ..      18      34 ..      10      35 .. 0.83
   2 !   79.4   3.1     4e-26   1.8e-22       1      79 [.      27     104 ..      27     106 .. 0.97
   3 ?   -2.9   0.0       1.9   8.4e+03      59      73 ..     122     136 ..     118     137 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0045
                HHSSS---HHHHHHHTT-S CS
      HTH_18 40 LlentglsvaeiAlalGFs 58
                L + ++ls++e+A+++G+s
  EHT98349.1 18 L-D-KSLSIDEVAAKSGYS 34
                3.4.899***********7 PP

  == domain 2  score: 79.4 bits;  conditional E-value: 4e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 +aa+ g+s ++Lqr+f++v+ +t   y+r++Rl  A ++L+ +t+++v +iA+++G++++++Fsr fr+ f +tP++yr
  EHT98349.1  27 VAAKSGYSKWHLQRMFRSVTKQTLGGYIRERRLTLAAEALR-QTQRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTAYR 104
                 5999************************************7.5***********************************9 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.9
                 -HHHHHHHHHHHHSS CS
      HTH_18  59 dlsrFsrafrklfge 73 
                    ++s + ++++ge
  EHT98349.1 122 CGETMSSFTQRTTGE 136
                 555666677777766 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.8e-08   0.00026       1      37 [.      14      50 ..      14      55 .. 0.91
   2 !   46.2   0.7   7.1e-16   3.2e-12       1      42 []      66     105 ..      66     105 .. 0.95
   3 ?   -2.9   0.0       1.8   8.2e+03      33      41 ..     122     130 ..     122     131 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.8e-08
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-H CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtP 37
                + +nl+ +l+i+++A+  g+S  +++r F+++t +t 
  EHT98349.1 14 IDQNLDKSLSIDEVAAKSGYSKWHLQRMFRSVTKQTL 50
                789*****************************99886 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 7.1e-16
                 HHCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 Lr   +t   + diA+++g+ S+++Fsr+F++++ +tP++yr+
  EHT98349.1  66 LR---QTQRPVFDIAMQYGYdSQQTFSRVFRRQFSQTPTAYRH 105
                 56...78889********************************8 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
                 SSS-HHHHH CS
    HTH_AraC  33 tGmtPsqyr 41 
                 +G+t+s++ 
  EHT98349.1 122 CGETMSSFT 130
                 589999885 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1       8      35 ..      20      47 ..      17      66 .. 0.90
   2 ?   -2.5   0.0       1.2   5.5e+03      22      32 ..      99     109 ..      98     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                TTHHHHHHHHHHTSSHHHHHHHHTTSSC CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnGern 35
                + ls+ e+A+k+G s+++++r+++  ++
  EHT98349.1 20 KSLSIDEVAAKSGYSKWHLQRMFRSVTK 47
                56999******************98665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 SHHHHHHHHTT CS
       HTH_3  22 srstisriEnG 32 
                 ++++++++++ 
  EHT98349.1  99 TPTAYRHYMRR 109
                 68889999886 PP

>> CBM9_1  Carbohydrate family 9 binding domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.3e-05      0.11      99     148 ..      24      78 ..      10     106 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
                 E-TT-.........-GGGEEEEEEEETTEEEEEEEEE-SS-.---TTEEEEEEEEE CS
      CBM9_1  99 vdegkkk......liaegvtsaskkseggYivEaaiplktiatpaegkviGfdlai 148
                 +de   k      +++  ++s++k++ ggYi E ++ l++   + + ++  fd+a+
  EHT98349.1  24 IDEVAAKsgyskwHLQRMFRSVTKQTLGGYIRERRLTLAAE-ALRQTQRPVFDIAM 78 
                 3433333444446899**********************877.55555655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1258.49
//
Query:       EHT98350.1  [L=161]
Description: DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-14   54.7   0.2    1.5e-14   54.2   0.2    1.2  1  MerR-DNA-bind  MerR, DNA binding
    9.5e-14   50.9   0.1    1.7e-13   50.1   0.1    1.4  1  MerR           MerR family regulatory protein
    1.6e-12   47.3   0.0    2.4e-12   46.7   0.0    1.3  1  MerR_1         MerR HTH family regulatory protein
  ------ inclusion threshold ------
      0.011   15.3   0.0        5.7    6.6   0.0    2.6  2  HTH_24         Winged helix-turn-helix DNA-binding
      0.023   14.6   0.3        9.6    6.2   0.1    3.0  2  MarR_2         MarR family
      0.037   14.2   0.0      0.075   13.3   0.0    1.4  1  LPD22          Large polyvalent protein associated domain 22
      0.047   13.5   0.0        9.4    6.1   0.0    2.3  2  HTH_IclR       IclR helix-turn-helix domain
      0.076   13.0   0.1       0.69    9.9   0.0    2.6  2  MarR           MarR family


Domain annotation for each model (and alignments):
>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.2   6.7e-18   1.5e-14       1      65 []      54     119 ..      54     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 6.7e-18
                    HHHHHHHHHHHHTT--HHHHHHHH.HHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   1 leRLkfIrrarrlGFsLdeIrelL.alyddrappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    l+R+++I+ a+r+G++L+ +++ L ++++d++ ++qd+ +l++++++el++ri++L++lr +L+++
     EHT98350.1  54 LRRVAIIKIAQRIGIPLASVSDSLeNMPADKRMSAQDWGNLTQHWRDELDKRIETLTRLRNDLDGC 119
                    79*************************************************************987 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   7.4e-17   1.7e-13       1      38 []      13      49 ..      13      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 7.4e-17
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                t gevA+++Gv +++L++YE++GLi +++R++g++R+Y
  EHT98350.1 13 TPGEVARRSGVAVSALHFYESKGLI-SSTRNPGNQRRY 49
                78***********************.***********9 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.1e-15   2.4e-12       2      67 ..      13      78 ..      12      80 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.1e-15
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikklln 67
                + geva+++gv ++ l+++e +gl+   r+ g++r+Y+++ ++r++ ik  +  G++l+ +++ l+
  EHT98350.1 13 TPGEVARRSGVAVSALHFYESKGLISSTRNPGNQRRYSRDVLRRVAIIKIAQRIGIPLASVSDSLE 78
                679********************************************************9998776 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0042       9.3      16      35 ..      10      29 ..       9      31 .. 0.87
   2 ?    6.6   0.0    0.0025       5.7      21      41 ..      60      80 ..      55      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0042
      HTH_24 16 prisqreLAerlglSpstvn 35
                p ++  e+A+r+g+ +s+++
  EHT98350.1 10 PVLTPGEVARRSGVAVSALH 29
                66899************987 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0025
      HTH_24 21 reLAerlglSpstvnrrlkrL 41
                  +A+r+g++++ v+  l+++
  EHT98350.1 60 IKIAQRIGIPLASVSDSLENM 80
                579************988775 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0043       9.6      17      38 ..       7      28 ..       5      48 .. 0.69
   2 ?    5.1   0.1    0.0095        21      20      45 ..      45      80 ..      40      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0043
                TTTSEEEHHHHHHHHTSSHHHH CS
      MarR_2 17 rpgrdltvgelarrlglsksav 38
                 p + lt+ge+arr g+  sa+
  EHT98350.1  7 YPKPVLTPGEVARRSGVAVSAL 28
                5666689999999999987765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0095
                S..........EEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2 20 r..........dltvgelarrlglsksavsrilkrL 45
                +          ++++  +a+r g++ ++vs  l+ +
  EHT98350.1 45 NqrrysrdvlrRVAIIKIAQRIGIPLASVSDSLENM 80
                45556666666789999*************999877 PP

>> LPD22  Large polyvalent protein associated domain 22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.3e-05     0.075      22      56 ..      60      96 ..      57      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.3e-05
       LPD22 22 lrlaeelGlppdvvernleaferaa..eaedwdalle 56
                 ++a+++G+p ++v ++le + +++  +a+dw +l++
  EHT98350.1 60 IKIAQRIGIPLASVSDSLENMPADKrmSAQDWGNLTQ 96
                589******************9999999****99986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0042       9.4      19      36 ..      12      29 ..       5      31 .. 0.86
   2 ?    5.1   0.0    0.0089        20      21      36 ..      59      74 ..      48      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0042
                -BHHHHHHHHTS-HHHHH CS
    HTH_IclR 19 ltlselArrtglpkStvh 36
                lt  e+Arr+g++ S+ h
  EHT98350.1 12 LTPGEVARRSGVAVSALH 29
                6899**********9988 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0089
                HHHHHHHHTS-HHHHH CS
    HTH_IclR 21 lselArrtglpkStvh 36
                +  +A+r+g+p ++v+
  EHT98350.1 59 IIKIAQRIGIPLASVS 74
                5579**********97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00031      0.69      42      58 ..      32      48 ..      12      49 .. 0.90
   2 ?   -0.4   0.0      0.51   1.1e+03      20      36 ..      59      75 ..      55      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00031
                HHTTSEEEEEETTSTTS CS
        MarR 42 ekkGlieRskspeDrRe 58
                e kGli+++++p+++R 
  EHT98350.1 32 ESKGLISSTRNPGNQRR 48
                89*************95 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.51
                HHHHHHHHTS-HHHHHH CS
        MarR 20 vseLakklgvskstvtr 36
                ++++a ++g+  ++v+ 
  EHT98350.1 59 IIKIAQRIGIPLASVSD 75
                67999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1389.74
//
Query:       EHT98351.1  [L=221]
Description: glutathione S-transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-17   61.7   0.0    1.2e-16   60.8   0.0    1.5  1  GST_N     Glutathione S-transferase, N-terminal domain
    4.7e-13   49.3   0.1    9.4e-13   48.4   0.1    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.8e-12   47.4   0.0    8.4e-12   45.2   0.0    2.0  2  GST_N_2   Glutathione S-transferase, N-terminal domain
    5.6e-06   26.5   0.0    1.2e-05   25.4   0.0    1.6  1  GST_C     Glutathione S-transferase, C-terminal domain
    4.1e-05   24.3   0.0     0.0002   22.0   0.0    2.1  2  GST_N_4   Glutathione S-transferase N-terminal domain
    0.00073   19.8   0.0     0.0013   19.0   0.0    1.5  1  Tom37     Outer mitochondrial membrane transport complex prot
     0.0026   17.9   0.0     0.0068   16.6   0.0    1.6  2  GST_C_3   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.019   15.6   0.0      0.096   13.3   0.0    2.0  2  GST_C_5   Glutathione S-transferase, C-terminal domain
      0.028   14.4   0.0      0.064   13.3   0.0    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   5.9e-20   1.2e-16       5      75 ..       3      73 ..       1      74 [. 0.95

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 5.9e-20
                EESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  5 lysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYia 75
                 +++++++r+hr++++l++++v+y+v+++++ea+  +++ l+k++plgk+P+  d++ +++ES+aIleY++
  EHT98351.1  3 TVHHLEQSRSHRVLWMLEELEVPYQVKRYQREASMLAPEALKKVHPLGKSPVITDGNRVVAESGAILEYLE 73
                5789999************************9999999*******************************97 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   4.7e-16   9.4e-13      10      73 ..      12      78 ..       5      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 4.7e-16
                HHHHHHHHHHHT--EEEE---TTTT...HHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-G CS
     GST_N_3 10 arrvrlaLnekglpvevvevtpgeh...deellaknplgkvPvLeddgealtdSlaIidyLeelypg 73
                + rv ++L+e+ +p++v     + +   +e+l++++plgk Pv++d+++++ +S aI++yLee+y+ 
  EHT98351.1 12 SHRVLWMLEELEVPYQVKRYQREASmlaPEALKKVHPLGKSPVITDGNRVVAESGAILEYLEEKYDS 78
                78***************8887666556599999999*****************************95 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   4.2e-15   8.4e-12       5      69 ..      12      74 ..      10      75 .. 0.94
   2 ?   -0.7   0.0       0.9   1.8e+03      27      51 ..     158     182 ..     136     196 .. 0.64

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 4.2e-15
                HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  5 ahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                +hRvl++l+++ ++++++ + +++ ++ ++e +++++p+g+ Pv+ d +++v++eS +Il+yle+
  EHT98351.1 12 SHRVLWMLEELEVPYQVKRY-QREASMLAPEALKKVHPLGKSPVITD-GNRVVAESGAILEYLEE 74
                8*******************.678899999****************9.899************98 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.9
                 ..-TTSHHHHHHHHCTTTSSSEEE- CS
     GST_N_2  27 epkgfekseefprlnprgtVPvLwd 51 
                   +++ +++ f+ ++ + + PvL +
  EHT98351.1 158 SANPWFAGQRFSIADVQMSFPVLAL 182
                 3455555555566666668888875 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     6e-09   1.2e-05      28      92 ..     143     204 ..     121     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6e-09
                 HHHHHHHHHHHHHHHHTSSSSSTTSSCHHHH.HHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTS CS
       GST_C  28 lekvaevlsaleeelkkqdylvGdkltlADi.alvpilnwlqrlglafgqekfpnlkawlerimar 92 
                 ++++++  +++e +l+ + +++G+++++AD+   +p+l   qr gl       p+ ++wl+++ +r
  EHT98351.1 143 DKQLHVHRQMIEDHLSANPWFAGQRFSIADVqMSFPVLALSQRAGLHNA----PATQKWLTTVQQR 204
                 6777788899*********************777888888888887665....99****9999776 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     1e-07    0.0002      29      92 ..      47     111 ..      22     116 .. 0.84
   2 ?   -1.3   0.0       1.9   3.8e+03      73      86 ..     145     158 ..     135     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1e-07
     GST_N_4  29 spkgklPfielngelliadsefiieflkekg.vdldaelse.eqkadaralkalveeklynallye 92 
                  p gk P+i+ +++ ++a+s  i+e+l+ek   ++  +l++ e + +ar +  + e +l ++l++ 
  EHT98351.1  47 HPLGKSPVITDGNR-VVAESGAILEYLEEKYdSEKRLQLTDeEARLQARYWLHYAEGSLMPLLVMK 111
                 689********888.****************65555888883558999999999999999888765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
     GST_N_4  73 daralkalveekly 86 
                 + ++ ++++e++l 
  EHT98351.1 145 QLHVHRQMIEDHLS 158
                 57889999999985 PP

>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.5e-07    0.0013      24      90 ..      44     109 ..      12     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.5e-07
       Tom37  24 pslsptgeLPaLkdgegtwisgfdnIveylrkks.eesdldaslsakekadatAlisllesklaplll 90 
                 +++ p g+ P+++dg+ + +++   I+eyl++k+ +e+   + ++++++++a+ ++++ e  l pll 
  EHT98351.1  44 KKVHPLGKSPVITDGN-RVVAESGAILEYLEEKYdSEK-RLQLTDEEARLQARYWLHYAEGSLMPLLV 109
                 5568999*****9988.888***********9964222.1235555669999999********99985 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.3   8.7e+03      94      98 ..      70      74 ..      61     100 .. 0.62
   2 !   16.6   0.0   3.4e-06    0.0068      21      89 ..     138     204 ..     127     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.3
                HHHCT CS
     GST_C_3 94 aYles 98
                +Yle+
  EHT98351.1 70 EYLEE 74
                33332 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHH.HHHHHHHHHHTCCCC-HHHHHHHHHHHTS CS
     GST_C_3  21 kkefleerlpkflkyfekvlkkkgggylvgdklTyADlal.fqvldgleeaealkkfpklkalyervear 89 
                 +k++l+++l  + + +e +l+  ++++++g+++++AD+ + f vl   ++a  l + p  +++   v++r
  EHT98351.1 138 QKAWLDKQLHVHRQMIEDHLS--ANPWFAGQRFSIADVQMsFPVLALSQRA-GLHNAPATQKWLTTVQQR 204
                 678888888889999999999..99*************6526666666666.457889999999999887 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.81   1.6e+03      15      51 ..      66     102 ..      59     107 .. 0.81
   2 ?   13.3   0.0   4.8e-05     0.096      29      71 ..     138     181 ..     110     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.81
                 HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHCCHTSSS CS
     GST_C_5  15 galfglvrdplseekrkelddnaayledllakhqgeG 51 
                 ga++ ++ + ++ ekr +l d+ a l+     h +eG
  EHT98351.1  66 GAILEYLEEKYDSEKRLQLTDEEARLQARYWLHYAEG 102
                 67788899999999**999999999887766666655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHHHHCCHTSSSSECCECC--HHHHHH.HHHHH CS
     GST_C_5  29 krkelddnaayledllakhqgeGPyfldkelsmadvav.vPflv 71 
                 +++ ld++     +++ +h +  P+f+++++s+adv +  P l+
  EHT98351.1 138 QKAWLDKQLHVHRQMIEDHLSANPWFAGQRFSIADVQMsFPVLA 181
                 34455555555667778888****************76367776 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.064      18      38 ..     153     173 ..     140     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                 CTTT---SS.CTTCS--HHHH CS
     GST_C_2  18 leahLadspflfGdqptlaDi 38 
                 +e+hL   p+++G ++++aD+
  EHT98351.1 153 IEDHLSANPWFAGQRFSIADV 173
                 8*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1602.94
//
Query:       EHT98352.1  [L=449]
Description: putative xanthine/uracil permeases family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-79  267.6  47.5    1.9e-79  267.2  47.5    1.1  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
        1.7    8.8   7.7       0.68   10.1   1.5    2.5  2  DUF3333          Domain of unknown function (DUF3333)


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.2  47.5   2.1e-83   1.9e-79       1     388 [.      26     409 ..      26     410 .. 0.99

  Alignments for each domain:
  == domain 1  score: 267.2 bits;  conditional E-value: 2.1e-83
                      HHHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHH CS
  Xan_ur_permease   1 gqllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllg 94 
                      +q++l+gl+++lam+++++vvP ++g+a    ++++ ++ at+l++  +++l+ l+++++++i +++s++++ta++++lG    ++i+++++lg
       EHT98352.1  26 RQEILAGLTTFLAMVYSVIVVPGMLGKA---GFSPTAVFVATCLVASFGSILIGLWANLPMAIGCAISLTAFTAFSLVLG----QHISVPVALG 112
                      699*************************...389**********************************************....7********* PP

                      HHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-...BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHH CS
  Xan_ur_permease  95 allvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa.vegltvvslkllllavvvllvilllsvflkglfsqlpi 187
                      a++++g+lf+lis+tg+r+++ r++p  v++++ ++iGl+l+ ia+++vg++  + ++gl+v+++ + +++v ++l++l+ +  l++  + ++i
       EHT98352.1 113 AVFLMGLLFTLISTTGIRAWILRNLPMGVAHGTGIGIGLFLLLIAADNVGLVVRNpGSGLPVALGHFSSFPVLMSLLGLAAIFGLEKRRVPGGI 206
                      ********************************************************************************************** PP

                      HHHHHHHHHHHHHHH.HTTSSHHHHS-SS-----------HH.......H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII..IIIHHHHH CS
  Xan_ur_permease 188 Ligiiagwllalfmg.ivnlspevseapwfqlpsplkfgtpl.....fnlgliltvlavalvavvesvGdiravakvvgrslkp..kpdlrral 273
                      L+++i++ +l l+++  v  ++ ++++p +   ++++++ +l     +++++++tvla++++av++++G+irava+++++ +k+   ++ +ral
       EHT98352.1 207 LLTVIVISALGLAFDpAVRWQG-LFALPSLRDAQGTSLFFSLdimgaLQPAVLPTVLALVMTAVFDATGTIRAVAGQANLLDKDgqIINGGRAL 299
                      **********************.9**************999999***************************************999******** PP

                      HHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SH CS
  Xan_ur_permease 274 ladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsa 367
                      ++d+l++l++gl+Ga+p+++y+e+++++a++    +++++ta+v+ +l+ +i ++++l++++P+++ ++++l+++g++++s+v++++++d+ +a
       EHT98352.1 300 TTDSLSSLFAGLVGASPAAVYIESAAGTAAG----GKTGLTAIVVGLLFLVILFMSPLAYLVPTYA-TAPALMYVGLLMLSNVAKIDFADFVDA 388
                      *******************************....*******************************.*************************** PP

                      HHHHHHHHHHHHHHH-----S CS
  Xan_ur_permease 368 rnllivavslvlGlgvatvpe 388
                      ++ l++av++vl+++++t+++
       EHT98352.1 389 MSGLLTAVIIVLTCNIVTGIM 409
                      ******************987 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5     0.035   3.1e+02      22      44 ..     109     132 ..     105     142 .. 0.72
   2 ?   10.1   1.5   7.6e-05      0.68      18      35 ..     334     351 ..     332     356 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.035
     DUF3333  22 ialallfLviLlvs.IvskGltAF 44 
                 +al+++fL+ Ll++ I ++G++A 
  EHT98352.1 109 VALGAVFLMGLLFTlISTTGIRAW 132
                 788888988666551666798886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 7.6e-05
     DUF3333  18 GiaAialallfLviLlvs 35 
                 G++Ai+++llfLviL++s
  EHT98352.1 334 GLTAIVVGLLFLVILFMS 351
                 9***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3159.05
//
Query:       EHT98353.1  [L=348]
Description: putative sodium/hydrogen exchanger family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-69  232.6  32.2    7.4e-69  232.4  32.2    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
       0.02   14.8   4.4        0.1   12.5   1.2    2.7  2  DUF4271         Domain of unknown function (DUF4271)
       0.11   12.7   0.4       0.11   12.7   0.4    2.1  2  Pox_A9          A9 protein conserved region


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4  32.2   1.2e-72   7.4e-69       3     322 ..       7     347 ..       4     348 .] 0.90

  Alignments for each domain:
  == domain 1  score: 232.4 bits;  conditional E-value: 1.2e-72
                     HHHHHHHHHHH.H.HHHTT..SXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgl.l.arrlk..lpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvl 93 
                     +li+++++++  + ar l   +p ++++i++G ll++ ++g ++ + +d+e+++ l++++llF+ G++++ +e+++ +++il lal++vlitvv+
      EHT98353.1   7 ILIMTLVVSLSgVaARILPfqIPLPLVQIAVGALLAWPTFG-LHVD-FDPELFLVLFIPPLLFADGWKTPVSEFLHYGREILGLALVLVLITVVG 99 
                     555555555556547777788********************.8888.************************************************ PP

                     HHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHH CS
  Na_H_Exchanger  94 iGlllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvav 188
                     iG+l+y++ ++gipl+ a++++a+ls+td+v+++ i+  egr+p++++ +l ge+++nDa+++v l++++a+a    + ++s++ ++++fl va+
      EHT98353.1 100 IGYLIYWT-VPGIPLIPAFALAAVLSPTDAVALSGIV-GEGRIPKKIMAILQGEALMNDASGLVSLKFAVAVA--MGTMVFSWGGASVEFLKVAL 190
                     ******95.9***************************.***********************************..9******************* PP

                     HHHHHHHHHHHHHHHHHHHS.....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTT...HHHHHHHHHH...HHHHH CS
  Na_H_Exchanger 189 gglllglvigwllrlitrft.....dddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnk...lseklesfre...glfnp 271
                     ggl++g+++ wl+ + +r++     +dd++++++l lll+++++l+ae+lgvsgil+a++aG++++  +  ++    ++ + +s++    ++fn+
      EHT98353.1 191 GGLVAGVAVCWLYGKSLRVLnrwsgSDDAATQIVLLLLLPFASYLIAEHLGVSGILAAVAAGMTITrSGIIRQApltMRLRANSVWHmleFVFNG 285
                     *************99999999999******************************************733333335445566999999999***** PP

                     HHHHHHHHHSXHHHHHX............XHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXH CS
  Na_H_Exchanger 272 lfFvlvGlsldlkvlnn............hlsvlilvllilvaillgrilavflllrllglsl 322
                     ++F+++Gl+l+ ++l++             +  ++ ++l+++a++++r+ + +++ r++++++
      EHT98353.1 286 MVFLMLGLQLP-SILQKsiaeanadpnvdIWMIFADIVLVYAALMVVRFGWLWIMQRFSRKTS 347
                     ***********.55544666777888676677777799*******************987665 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.024   1.5e+02      48      70 ..      86     108 ..      72     126 .. 0.76
   2 ?   12.5   1.2   1.7e-05       0.1      44     110 ..     273     340 ..     223     345 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.024
     DUF4271  48 srfqlflllltclllglllylll 70 
                     l+l+l+t++ +g+l+y+++
  EHT98353.1  86 LGLALVLVLITVVGIGYLIYWTV 108
                 55678888888888888888876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
     DUF4271  44 tksesrfqlflllltclllglllylllsefgslfgsyla...ssllllliiflilllylllKlllykllg 110
                 ++  ++  ++++ +++l+lgl l  +l++   + +   +   + +++++ i+l++++++++++++++++ 
  EHT98353.1 273 NSVWHMLEFVFNGMVFLMLGLQLPSILQKSIAEANA--DpnvDIWMIFADIVLVYAALMVVRFGWLWIMQ 340
                 67789999************9999999995555554..2469************************9975 PP

>> Pox_A9  A9 protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.7         3   1.8e+04      40      46 ..      87      93 ..      85     105 .. 0.53
   2 ?   12.7   0.4   1.8e-05      0.11      16      48 ..     269     300 ..     266     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3
      Pox_A9 40 GvaLlyi 46
                G+aL+ +
  EHT98353.1 87 GLALVLV 93
                5544432 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.8e-05
      Pox_A9  16 rlRpNsfafVvlksiisMvmyLvlGvaLlyiss 48 
                 rlR+Ns +   l  ++  +++L+lG+ L +i +
  EHT98353.1 269 RLRANSVWHM-LEFVFNGMVFLMLGLQLPSILQ 300
                 9*******96.678888888*******988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2680.61
//
Query:       EHT98354.1  [L=98]
Description: putative Na(+)/H(+) exchanger protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-08   32.1   2.2    5.6e-08   32.0   2.2    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
      0.041   13.9   0.0      0.045   13.8   0.0    1.1  1  MARVEL          Membrane-associating domain
        2.8    7.9   8.0        2.3    8.2   4.3    2.2  2  DUF2970         Protein of unknown function (DUF2970)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   2.2   9.4e-12   5.6e-08     319     380 ..       4      70 ..       1      71 [. 0.93

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 9.4e-12
                     SSXHHHHHHCCCCSS.BHHHHHHHHHHHHHH.....XHHHHTT.SSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 319 glslrealiigfgglqrgavalalaalgpal.....gllarel.yallivvvlftvlvqGlslkpllk 380
                      +s+re li++f+g+ rga++la ++++p+      +++ar   ++++++v+lf++lv  ++l++ll+
      EHT98354.1   4 SYSRRELLIASFAGV-RGAITLAGVLSIPLFlsngnPFPARYElVFIATGVILFSLLVGVIILPVLLR 70 
                     699************.***************9999999999888******************999986 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.6e-06     0.045      46     104 ..      14      72 ..       5      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.6e-06
      MARVEL  46 vfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdi 104
                  f++v + ++ ++ l + lf +   ++ +++ +++i+++++ +  lv+ i+l + lr++
  EHT98354.1  14 SFAGVRGAITLAGVLSIPLFLSNGNPFPARYELVFIATGVILFSLLVGVIILPVLLRGV 72 
                 5666666666666666666665666999999*************************993 PP

>> DUF2970  Protein of unknown function (DUF2970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.065   3.9e+02       9      16 ..      12      19 ..       9      30 .. 0.83
   2 ?    8.2   4.3   0.00038       2.3      32      52 ..      47      67 ..      42      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.065
     DUF2970  9 laaffGVr 16
                +a+f GVr
  EHT98354.1 12 IASFAGVR 19
                58999998 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00038
     DUF2970 32 hviivGlilaalfvllLillV 52
                 +i++G+il  l+v+++il V
  EHT98354.1 47 VFIATGVILFSLLVGVIILPV 67
                69****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 777.56
//
Query:       EHT98355.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.1    3.8e-97  325.2   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    5.3e-18   65.0   0.1    2.2e-17   63.0   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.9e-13   50.6   1.5    4.3e-13   49.4   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.037   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
      0.047   13.3   2.6      0.049   13.2   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.056   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.061   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
        0.1   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.22   11.9   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.43   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.5   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
          7    7.4   8.7        7.7    7.2   1.0    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.2   0.0  4.6e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT98355.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.2 bits;  conditional E-value: 4.6e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98355.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98355.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98355.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   2.7e-20   2.2e-17       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.7e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL +++d +p+++l++LLPW
      EHT98355.1 479 SLIGTCRLNGVEPEAWLRYVLGHIQD-WPVNRLHDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   1.5   5.2e-16   4.3e-13       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 5.2e-16
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +  d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98355.1 128 ETTCPACGGELNALDCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98355.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98355.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98355.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98355.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98355.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT98355.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.0   6.1e-05     0.049     144     229 ..      10      96 ..       3     189 .. 0.65
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98355.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98355.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98355.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98355.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98355.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98355.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98355.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98355.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98355.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98355.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98355.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98355.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98355.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98355.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98355.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98355.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98355.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98355.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98355.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98355.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98355.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1463  (0.0815996); expected 358.6 (0.02)
Passed bias filter:                     1031  (0.0575046); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 3849.75
//
Query:       EHT98356.1  [L=50]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-12   44.9   0.0    9.4e-12   44.7   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   5.2e-16   9.4e-12      59     100 ..       1      41 [.       1      42 [. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.2e-16
   TnpB_IS66  59 llykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 +++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98356.1   1 MFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 41 
                 689***********7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 388.05
//
Query:       EHT98357.1  [L=99]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   40.4   0.0    5.4e-10   39.4   0.0    1.5  2  HTH_Tnp_1  Transposase
     0.0054   16.5   0.0     0.0072   16.1   0.0    1.2  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.044   13.9   0.0    1.3  1  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0     9e-14   5.4e-10      21      64 ..       2      51 ..       1      63 [. 0.82
   2 ?   -2.5   0.0       1.1   6.6e+03      36      50 ..      83      97 ..      81      98 .. 0.65

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 9e-14
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae......feltale 64
                +pg+sv+++Ar+ ++++n L++Wrr y+++++ +pa+       +l+a e
  EHT98357.1  2 QPGVSVAQLARENNINDNLLFNWRRRYQQELSGTPAStpalipVTLAATE 51
                89***********************************7777743333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
   HTH_Tnp_1 36 spnqLykWrrqyreg 50
                 p+ L + +r+ ++g
  EHT98357.1 83 TPELLQTLIREMQGG 97
                567777777777655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0072      17      43 ..       4      31 ..       1      39 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryr.e 43
                G sv++ Are +++ + + +w++ry+ e
  EHT98357.1  4 GVSVAQLARENNINDNLLFNWRRRYQqE 31
                89***********************523 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.3e-06     0.044      12      39 ..       4      31 ..       1      33 [. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-06
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeeg 39
                G+sv+++Are +i+   +  W++ry+++
  EHT98357.1  4 GVSVAQLARENNINDNLLFNWRRRYQQE 31
                89***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 793.74
//
Query:       EHT98358.1  [L=73]
Description: hypothetical protein CKS_4712 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 600.64
//
Query:       EHT98359.1  [L=108]
Description: putative Na+/H+ exchanger protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.38   11.4   1.7        0.6   10.8   0.2    2.0  2  DUF4296   Domain of unknown function (DUF4296)


Domain annotation for each model (and alignments):
>> DUF4296  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       0.2   3.5e+03      74      86 ..       9      21 ..       4      22 .. 0.72
   2 ?   10.8   0.2   3.3e-05       0.6       3      24 ..      82     103 ..      81     108 .] 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.2
     DUF4296 74 yekvedrlkkekk 86
                ++k+e+rl+ke +
  EHT98359.1  9 LQKMEARLEKETD 21
                5678888888765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.3e-05
     DUF4296   3 nlipeekMedilyDlhlaeamv 24 
                 + i++e+M+++l Dl l+ea++
  EHT98359.1  82 KAISNETMQKLLHDLDLLEALL 103
                 579****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 877.21
//
Query:       EHT98360.1  [L=300]
Description: LysR family regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-42  143.9   4.4    5.9e-42  143.4   4.4    1.2  1  LysR_substrate  LysR substrate binding domain
    2.8e-22   78.4   0.8    8.3e-22   76.9   0.8    1.9  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.025   14.4   0.1    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
       0.14   12.4   0.1       0.27   11.4   0.1    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.15   12.0   0.0       0.39   10.7   0.0    1.7  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   4.4   1.6e-45   5.9e-42       4     208 ..      89     291 ..      86     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 1.6e-45
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepvs 97 
                      +g+Lr+g+pp ++ ++ +  +++fr+ryP+vel++ e    ++ +++++g+lD+a++a+p  ++  l    L++ pl++++++  p+ r++++s
      EHT98360.1  89 KTGQLRLGIPPMVGMQI-AGSVSAFRRRYPGVELNIAEFGGLTVQEAVLAGTLDIALTALPVdPELPLATLSLMRHPLCVLLPRKAPWLRRTRLS 182
                     68**********99988.77788***************************************888899*************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     l++La +pl+ ++e+++l ++l +a++++g++p++a+++ +++ l+a+v+a +G+a+lp+ ++++ l+   l +lpl+  +l+++l+l++r+g++
      EHT98360.1 183 LSELAAHPLLIFNEEFSLNRQLMQAFQRQGITPTIAVRSGQWDFLAAMVQAEMGLAILPEPICQR-LDKQSLLWLPLAS-ELQWHLGLIWREGSY 275
                     ***************************************************************88.55557777*****.*************** PP

                     CHHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflreal 208
                     ls+ ++a+i+++r+++
      EHT98360.1 276 LSRSAQAWIACCRAHW 291
                     ************9985 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.8   2.3e-25   8.3e-22       2      60 .]       4      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 2.3e-25
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                r+lr+f +v++++sftrAA++L ++qp++s+++++LEeelg+ L+ R+gr+l LT+ G+
  EHT98360.1  4 RALRYFTEVVRQQSFTRAAQALFVTQPTISKMVRQLEEELGCALLLRDGRRLHLTDSGQ 62
                79*******************************************************97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1     7e-06     0.025      12      48 ..      15      51 ..       6      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7e-06
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHH CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldlddpd 48
                +++ +++A+aL+v   T+++ +r++ee lg+ l   d
  EHT98360.1 15 QQSFTRAAQALFVTQPTISKMVRQLEEELGCALLLRD 51
                57899*************************9986444 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.6e-05      0.27      26      49 ..      19      42 ..      11      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
                    HHHHHHHTS-HHHHHHHHHHHHHT CS
  Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekd 49
                    ++ a++L v  +++s+m++ Le++
      EHT98360.1 19 TRAAQALFVTQPTISKMVRQLEEE 42
                    66799****************985 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.39      24      43 ..      22      41 ..      15      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                HHHHTS-HHHHHHHHHHHHH CS
        MarR 24 akklgvskstvtrvldrLek 43
                a +l v+++t+++++++Le+
  EHT98360.1 22 AQALFVTQPTISKMVRQLEE 41
                67899**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2546.30
//
Query:       EHT98361.1  [L=141]
Description: holin-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-28   96.6  11.9    8.3e-28   96.2  11.9    1.2  1  LrgA         LrgA family


Domain annotation for each model (and alignments):
>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2  11.9   4.6e-32   8.3e-28       3      94 .]      31     122 ..      29     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 4.6e-32
        LrgA   3 lGellsrllplpiPgsviGlllLlllLltkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtglvv 94 
                 ++e l+++l+lp+P++v+G+llLlll++++i++l++v+++a++ll+++ l+F+Pa+v+v++y+dll+ ++++i+++++vst lvl++t+lvv
  EHT98361.1  31 ASEQLVNWLHLPLPANVVGMLLLLLLIALRILPLRWVKAGASWLLAEMLLFFIPAVVAVINYADLLQVDGWRIFLVIAVSTTLVLAATALVV 122
                 7899*************************************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1000.13
//
Query:       EHT98362.1  [L=231]
Description: membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-68  228.1  15.1    9.2e-68  228.0  15.1    1.0  1  LrgB          LrgB-like family
  ------ inclusion threshold ------
        8.3    6.4  16.0      0.089   12.7   5.8    2.5  3  LrgA          LrgA family


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0  15.1     1e-71   9.2e-68       1     212 [.      14     225 ..      14     227 .. 0.99

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 1e-71
        LrgB   1 TllaYllakalykklkkpllnPvlvaivliillllllgisyetYkegakllsllLgpatVaLAvpLYkqrellkknllaillgllvgslvsllsavlla 99 
                 Tl++Y++ k+ly+++++ ll P++++ ++++llll+++is ++Y +++++l +lLgpat a+Avp+Y++++++k+++l++ +g+l++++vs++s+v+la
  EHT98362.1  14 TLVIYYVNKRLYRRWPTLLLMPLIMTPMILVLLLLVTHISWQNYIAESHWLLWLLGPATMAFAVPVYENMDVIKRHWLSLSAGVLTATMVSVCSSVWLA 112
                 99************************************************************************************************* PP

        LrgB 100 kllglseelllsllpkSvTtpiAmevseelgGipsltavlviltGilGallgelllkllrikdpvarGlalGtashaiGtakalelgeeagafsslamv 198
                 +ll+l+e+l++sl+ +S+Ttp+A+++++ +g++p+l+a++v++tG++G+++g++l+ ++ i+++va+G+ +G+ash+ Gta+a++lg+++g +ssl m+
  EHT98362.1 113 RLLSLPESLQRSLAVRSITTPFALAAAKPMGAQPDLVALFVVITGVFGMAVGDVLFLRIAIQQSVAKGAGFGAASHGAGTARAYQLGQQEGVVSSLVMM 211
                 *************************************************************************************************** PP

        LrgB 199 laGiltallaplll 212
                 l+G++t++lapl+ 
  EHT98362.1 212 LSGVVTVILAPLIG 225
                 ***********985 PP

>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.8     1e-05     0.089      15      93 ..      34     111 ..      26     112 .. 0.87
   2 ?   -3.4   0.2       1.1     1e+04      80      86 ..     154     160 ..     148     175 .. 0.55
   3 ?    0.5   0.2     0.067     6e+02      60      89 ..     191     220 ..     187     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1e-05
        LrgA  15 iPgsviGlllLlllLltkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtglv 93 
                 +P     ++l+lllL+t  ++ ++  + +++ll  l    +  +v v e++d++k+++l++ + ++  t+++++ + ++
  EHT98362.1  34 MPLIMTPMILVLLLLVT-HISWQNYIAESHWLLWLLGPATMAFAVPVYENMDVIKRHWLSLSAGVLTATMVSVCSSVWL 111
                 55566678888888888.677777777899*****************************************99988876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
        LrgA  80 vvstllv 86 
                 v++ ++ 
  EHT98362.1 154 VITGVFG 160
                 3333333 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.067
        LrgA  60 gvmeyldllkaellailvalvvstllvlvv 89 
                 g    ++l ++e++   +++++s +++++ 
  EHT98362.1 191 GTARAYQLGQQEGVVSSLVMMLSGVVTVIL 220
                 666677788888998999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1808.94
//
Query:       EHT98363.1  [L=181]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-47  160.6   1.6    3.3e-47  160.4   1.6    1.0  1  YfaZ       YfaZ precursor
      0.001   19.2   9.9       0.34   11.0   9.9    2.5  1  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> YfaZ  YfaZ precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   1.6   3.7e-51   3.3e-47       4     180 .]       5     181 .]       1     181 [] 0.98

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 3.7e-51
        YfaZ   4 irlasvaslllvaasvnavsfnaelgkeytnlglglgtntdglavsGnyirsDddGdvagvglglnlpvGpltatvGakgvylsadegdeGsavavGgg 102
                 +   s++s++l ++ ++a++ + ++g++ tnl+lglgt   gl + Gn+ rsD+dG   g glg n +vG l     ak +++++++g++G ava+Gg 
  EHT98363.1   5 LVTGSALSVMLLSGAAQAIEGSVDVGEHSTNLNLGLGTTSPGLFLNGNWLRSDHDGSTYGAGLGYNVDVGDLRLAPTAKAIFTHPEDGKDGFAVALGGS 103
                 55678999******************************************************************************************* PP

        YfaZ 103 lalaigksfslfgeayyaPeeLssGvdsyeeansgvrynilrplalevGyryinlegkdgarDnalaDGayiGaklrf 180
                  +++i+    lfg++yyaPe L+  +dsy+ea +gv ++ +  l l vGy+yi+l+ k g++Dn l DG+y+Ga lrf
  EHT98363.1 104 AQYNINSMWGLFGQYYYAPEGLTDHLDSYQEASGGVSFTPVSLLNLRVGYQYIELNNKGGRKDNVLVDGPYVGASLRF 181
                 ****************************************************************************99 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   9.9   3.8e-05      0.34      22      95 ..      63     155 ..       8     181 .] 0.45

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
   OMP_b-brl  22 fyvggglglskvkv.................dgvgsdsgfgfgvgagyefndnvgvegglsysgdkdysgs........gktdikinlls....vpvna 91 
                 +++g+g++   v+v                 dg +    +++g++a y++n+ +g+ g++ y+  + +           g +       +    + +++
  EHT98363.1  63 YGAGLGYN---VDVgdlrlaptakaifthpeDGKD-GFAVALGGSAQYNINSMWGLFGQYYYAPEGLTDHLdsyqeasgGVSF------TpvslLNLRV 151
                 22333332...111112333333334433211111.13456677777777777777777776444332221111111211111......1222244444 PP

   OMP_b-brl  92 gyaf 95 
                 gy++
  EHT98363.1 152 GYQY 155
                 4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1406.34
//
Query:       EHT98364.1  [L=551]
Description: acetate permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-132  441.9  40.4     3e-132  441.3  40.4    1.2  1  SSF       Sodium:solute symporter family
      0.004   17.7   0.1      0.004   17.7   0.1    4.0  5  DUF2818   Protein of unknown function (DUF2818)
  ------ inclusion threshold ------
        3.3    7.8  12.3       0.27   11.3   4.5    3.1  3  DUF2784   Protein of Unknown function (DUF2784)


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.3  40.4    5e-136    3e-132       1     406 []      64     470 ..      64     470 .. 1.00

  Alignments for each domain:
  == domain 1  score: 441.3 bits;  conditional E-value: 5e-136
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitl 99 
                 y++ag+++tgf++gl++a++ +saasf+G++++v++sG+++++++lg+l+++ ++l+l+aerlrn+g++T++d++s+R+k+k  ++ lsa+ +l+v++l
  EHT98364.1  64 YYTAGGNITGFQNGLAMAGDFMSAASFLGISALVYTSGYDGLIYSLGFLVGWPMILFLIAERLRNLGRYTFADVASYRLKQKP-IRTLSACGTLVVVAL 161
                 9**********************************************************************************.9************** PP

         SSF 100 klsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG.gleslveklkeaapkvvdlltpdslkl 197
                 +l++++vg++kli+l++Glny++av+l+++l++lY+++GG+lA++++++i+avl+l+ga++++i+v+++ G ++++l++++++++pk++ +++p++l  
  EHT98364.1 162 YLIAQMVGAGKLIQLLFGLNYHIAVILVGILMVLYVLFGGMLATTWVQIIKAVLLLFGASFMAIMVMKSTGfSFNTLFTEAMAVHPKGAAIMQPGGL-- 258
                 ************************************************************************************************7.. PP

         SSF 198 lrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavp...kavgtevgvsniaypeLvvkllpnll 293
                 ++dp++alsl+lgl++G+aglphil+Rf+++ dak+++k+v+ +t++++++++++++i+++ai l+ga+p   +a g+ +g +n+a+++L+++++++ +
  EHT98364.1 259 VKDPISALSLGLGLMFGTAGLPHILMRFFTVADAKEARKSVFWATGFMGYFYFLTFIIGFGAILLVGANPafkDASGALIGGTNMAAVHLANAVGGSTF 357
                 *************************************************************************************************** PP

         SSF 294 aGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalfwk 392
                 +G+++av++A+i++++++l+l+++sa+++DlY+++ rk++a+e+ +++vs+i+vlv++++ai+l + +e+++++++v laf+++as+++++ill+++w+
  EHT98364.1 358 LGFISAVAFATILAVVAGLTLAGASAVSHDLYASVYRKGQASERDELRVSKITVLVLGAVAIALGILFEKQNIAFMVGLAFSIAASCNFPIILLSMYWS 456
                 *************************************************************************************************** PP

         SSF 393 rvneqGAlagliiG 406
                 +++++GA++g+++G
  EHT98364.1 457 KLTTRGAMVGGWLG 470
                 ************98 PP

>> DUF2818  Protein of unknown function (DUF2818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.9      0.06   3.6e+02      47      87 ..      11      51 ..       1      57 [. 0.62
   2 ?   -3.7   0.1         3   1.8e+04      42      53 ..     158     169 ..     148     172 .. 0.71
   3 ?   -2.8   0.4       1.6   9.7e+03      35      43 ..     206     214 ..     181     235 .. 0.55
   4 !   17.7   0.1   6.8e-07     0.004       6      55 ..     270     319 ..     265     327 .. 0.91
   5 ?    1.1   0.0       0.1   6.1e+02      30      60 ..     399     429 ..     368     448 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.06
     DUF2818 47 lvvgllalllEaragnvaaqgWeFYavtlslflvfafpgfv 87
                ++  + al+ +a +g v++q  ++ a+ +++++v a+ + +
  EHT98364.1 11 ALLPFSALAADAITGAVQKQAVNYQAIVMFVIFVGATLSIT 51
                33334466667788888888888888877777776665555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
     DUF2818  42 llvlylvvglla 53 
                 +++lyl++ +++
  EHT98364.1 158 VVALYLIAQMVG 169
                 567777777776 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.6
     DUF2818  35 lalrllEll 43 
                 ++++++  +
  EHT98364.1 206 TWVQIIKAV 214
                 344444444 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 6.8e-07
     DUF2818   6 lllalvaANLPflserlflviplkkaeKslalrllEllvlylvvgllall 55 
                 l l++ +A LP++  r+f+v ++k+a+Ks+ +    +  +y+++ ++++ 
  EHT98364.1 270 LGLMFGTAGLPHILMRFFTVADAKEARKSVFWATGFMGYFYFLTFIIGFG 319
                 6688999***************************************9985 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.1
     DUF2818  30 kaeKslalrllEllvlylvvgllalllEara 60 
                 +++ +l +  + +lvl +v+++l++l+E+++
  EHT98364.1 399 SERDELRVSKITVLVLGAVAIALGILFEKQN 429
                 456667777888999999*********9654 PP

>> DUF2784  Protein of Unknown function (DUF2784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.48   2.9e+03      14      32 ..      37      59 ..      32      80 .. 0.64
   2 ?   11.3   4.5   4.6e-05      0.27       6      43 ..     185     222 ..     182     241 .. 0.80
   3 ?   -1.2   0.2      0.34     2e+03      10      26 ..     364     399 ..     357     426 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.48
     DUF2784 14 fvlFvvlGglli....wrwvrtl 32
                +v+Fv++ g+ +    w+ +rt+
  EHT98364.1 37 IVMFVIFVGATLsityWASKRTR 59
                44455443333334455555554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.6e-05
     DUF2784   6 lvlvlHllfvlFvvlGglliwrwvrtlwlHlaaialva 43 
                 +v+++ +l+vl+v++Gg+l+ +wv+++++ l+ ++  +
  EHT98364.1 185 AVILVGILMVLYVLFGGMLATTWVQIIKAVLLLFGASF 222
                 688999*********************96555554433 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.34
     DUF2784  10 lHllfvlFvvlGglli...................w 26 
                 + ++ +l vv+G+ l+                    
  EHT98364.1 364 VAFATILAVVAGLTLAgasavshdlyasvyrkgqaS 399
                 556777888888777766666665555555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4059.90
//
Query:       EHT98365.1  [L=109]
Description: conserved inner membrane protein involved in acetate transport [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-35  119.5   0.1      5e-35  119.3   0.1    1.0  1  DUF485        Protein of unknown function, DUF485
  ------ inclusion threshold ------
      0.015   14.9   0.4      0.018   14.6   0.4    1.0  1  MASE3         Membrane-associated sensor domain
      0.026   14.3   0.6      0.055   13.3   0.6    1.4  1  DUF2157       Predicted membrane protein (DUF2157)
      0.056   13.9   0.7      0.067   13.7   0.7    1.1  1  PNTB_4TM      4TM region of pyridine nucleotide transhydrogen
      0.065   12.0   0.1      0.067   12.0   0.1    1.0  1  DUF2207       Predicted membrane protein (DUF2207)
       0.13   11.8   0.1       0.16   11.5   0.1    1.1  1  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.1   1.7e-38     5e-35       2      88 ..      17     104 ..      16     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 1.7e-38
      DUF485   2 aspkFqeLvrkrrrfafpltaiflvvYfgfvllvafapdllatkvgeg.nitvglllgllqivltflltglYvrrAnrefDplaeeir 88 
                 ++p+FqeLv+kr++fa++l++i+lv+Y+gf+ll+afap++l+t++ +g n+t g+++g+++iv++flltg+Yv+rAn+efD+l+++i+
  EHT98365.1  17 KNPRFQELVHKRQSFALLLSLIMLVLYVGFILLIAFAPGWLGTPLHAGtNVTRGIPIGVGLIVISFLLTGVYVWRANGEFDRLTKAIL 104
                 79************************************************************************************97 PP

>> MASE3  Membrane-associated sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   6.1e-06     0.018     101     169 ..      29      98 ..      20     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.1e-06
       MASE3 101 v.lrayavflvyalvtlllllsifypkifPalfiegsGlTpfkiisEyliilllllalllllrrrkkfek 169
                 + ++  + +++++l++ ++ll+ f p+++ +    g+++T+   i   li++ +ll+ + ++r   +f++
  EHT98365.1  29 QsFALLLSLIMLVLYVGFILLIAFAPGWLGTPLHAGTNVTRGIPIGVGLIVISFLLTGVYVWRANGEFDR 98 
                 3333444455556666777788899****************98888888888899999999999988876 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   1.8e-05     0.055      14      98 ..      12     103 ..       7     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
     DUF2157  14 aqallaryeaeeresarrrsfleallvlGalllglGlilfvAan..W.....qglsrlvk.fllllvllllslllg.avlwrdrrvpprlgeal 98 
                 +q++ +  +++e  ++  r++  +ll l +l+l +G il++A    W      + +++++ + + ++l+++s+ll+ +++wr + +++rl +a+
  EHT98365.1  12 YQQIEKNPRFQELVHK--RQSFALLLSLIMLVLYVGFILLIAFApgWlgtplHAGTNVTRgIPIGVGLIVISFLLTgVYVWRANGEFDRLTKAI 103
                 6777777777765444..55568888888999999999999998889888874444455515577899999999999*****999999998886 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.7   2.2e-05     0.067       2      49 ..      35      83 ..      34     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
    PNTB_4TM  2 ltvfvLalfvGyeviwk.VtpaLhtPLmsvtnaisgiiivgallalgst 49
                l++++L l+vG+ +     +  L tPL ++tn+  gi i  +l++++  
  EHT98365.1 35 LSLIMLVLYVGFILLIAfAPGWLGTPLHAGTNVTRGIPIGVGLIVISFL 83
                678999*****98755505668***************999999988833 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.2e-05     0.067     377     439 ..      26     101 ..       2     108 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
     DUF2207 377 kkklkklsalglgliilglilillallllvll.............lvfllilllillliai....ivlllfsrllgrrte 439
                  k++    +l+l+ ++l++ +ill++++ + l             +     ++++l++i++    ++++ + + ++r+t+
  EHT98365.1  26 HKRQSFALLLSLIMLVLYVGFILLIAFAPGWLgtplhagtnvtrgI----PIGVGLIVISFlltgVYVWRANGEFDRLTK 101
                 44455555555666666666666666555555999*9999855532....444444444430000333333345555555 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.3e-05      0.16      96     175 ..      10      87 ..       7      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
                   TTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHH CS
  E1-E2_ATPase  96 kiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalga 175
                   +i +++e+  ++  +l++k ++++  l++++l++++ ++l+  +  ++l  + l+a + ++  iP++ +l+v   l++g+
    EHT98365.1  10 RIYQQIEKN-PRFQELVHKRQSFALLLSLIMLVLYVGFILLIAFAPGWL-GTPLHAGTNVTRGIPIGVGLIVISFLLTGV 87 
                   677777776.777788888888888899998888888888888877777.9999999999*********99999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 947.76
//
Query:       EHT98366.1  [L=651]
Description: acetyl-CoA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-94  317.1   0.0    1.7e-94  316.8   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    6.5e-26   91.1   0.0    1.4e-25   90.1   0.0    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
    3.6e-21   74.8   0.2    9.1e-21   73.5   0.2    1.8  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.8   0.0   2.9e-98   1.7e-94       2     422 ..      83     522 ..      82     523 .. 0.86

  Alignments for each domain:
  == domain 1  score: 316.8 bits;  conditional E-value: 2.9e-98
                  HHHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTE CS
  AMP-binding   2 eeqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledsea 95 
                  +++ a++ d++a+++      e + lT+r+l++ v+r+A++L+ lGvkkgd+Vai++p+ pe  va+la++++Gav++++  ++++e++a  + ds a
   EHT98366.1  83 DRHLATRGDHPAIIWegddASESKILTFRQLHADVCRFANVLELLGVKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRVIDSSA 180
                  67889999*********9988899************************************************************************** PP

                  SEEE.........ETCTCCC.HHHHHHHHSCC..-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS- CS
  AMP-binding  96 kvli.........atvdsel.leklleaaakl..eavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkP 174
                  ++++         +t   +   +++++a +++   +vk v+v ++ + +      + e+ ++ ++       +++ ++e +++d+++i+YTSG+TGkP
   EHT98366.1 181 SLIVtadegvragRT---IPlKKNVDDALKNPnvNSVKNVVVFQRTGKDVG----WVEGRDRHWHelmqnasTNHSAAEMQAEDPLFILYTSGSTGKP 271
                  ****99988764412...333344444444430044555555555444444....333333333134456774557779******************* PP

                  EEEEEEH.HHHHHHHHHHH.HHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHH CS
  AMP-binding 175 KGVmlsh.rnlvanvaslk.letrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvlealle 269
                  KGV +++ ++lv++++++k +   f+ ++ddv+++++++ +++g+++ l+++l++Gat  ++++ +  ++p+++ ++i+k+kvt+++++P++++al++
   EHT98366.1 272 KGVLHTTgGYLVYAATTFKfV---FDYHQDDVYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNwPTPARMGQVIDKHKVTLLYTAPTAIRALMA 366
                  *******99999999998632...666789*************************************666**************************99 PP

                  CCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSE CS
  AMP-binding 270 sgalkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgee 364
                  +g+++   + +d sslr++ ++gep++pe++++++++ g+   ++++++++TEt+g+++++ +     k+gs+ +p+ gv+ ++vD e g+p     e
   EHT98366.1 367 EGDKA--IEGTDRSSLRIMGSVGEPINPEAWEWYHKKIGNsrcPIVDTWWQTETGGFMITPLPGATVLKPGSATTPFFGVQPALVDNE-GNPQDGACE 461
                  86655..7788****************************9******************875546666789****************98.9**988889 PP

                  EEEEEEET..TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 365 Gellvrgp..gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  G l++     g ++  ++++e+ +++++s  ++ + +GD +r+dedGy++i+gR +d++++
   EHT98366.1 462 GNLVITDSwpGQARTLFGDHERFEQTYFSTfKNAYFSGDGARRDEDGYYWITGRVDDVLNV 522
                  *****976459****************974667*************************987 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   2.3e-29   1.4e-25       1      76 []     531     609 ..     531     609 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.3e-29
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------...HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsea...leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+Esalvshp++aeaaVvG+p+ +kG+a+ a+++l+ g+e+   l  e++ +vrke+gp+a+p+ ++ +d+lpktrsGK
     EHT98366.1 531 EIESALVSHPKIAEAAVVGIPHSIKGQAIYAYITLNHGEEPspeLYTEVRNWVRKEIGPIATPDVLHWTDSLPKTRSGK 609
                    8**********************************767433457**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.2   1.5e-24   9.1e-21       1      55 []      24      81 ..      24      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.5e-24
                HHHHHHHHHH-HHHHHHHHHCCS--SB--S-SECSTTTC...T-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqakeldWekpfdkvldgskgp...fikWFeGGklNicyNc 55
                y+++y++S++dpe+FW+eq k ldW+kp++kv ++s++p   +i+W+e+G+lN + Nc
  EHT98366.1 24 YQAMYQQSVTDPETFWGEQGKILDWIKPYSKVKNTSFAPgniSIRWYEDGTLNLAANC 81
                9************************************998899*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4597.69
//
Query:       EHT98367.1  [L=433]
Description: glutamate/aspartate:proton symporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.6e-118  395.0  35.7     4e-118  394.8  35.7    1.0  1  SDF          Sodium:dicarboxylate symporter family
  ------ inclusion threshold ------
       0.17   11.6   0.1       0.54   10.1   0.1    1.8  1  DUF3806      Domain of unknown function (DUF3806)
       0.76    9.4  12.1        1.7    8.3   2.3    2.4  2  Tetraspanin  Tetraspanin family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.8  35.7  6.7e-122    4e-118       1     390 []       8     411 ..       8     411 .. 0.94

  Alignments for each domain:
  == domain 1  score: 394.8 bits;  conditional E-value: 6.7e-122
         SDF   1 LllqiliglvlGlviGll.....elvkela.alisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilalll 93 
                 L +qili+lvlG+++G++     +++++l+ + +sp+gd+fi+l+km++vP+v++s+i+gia++gdakklg++glkt++yf ++t++A+++g++la+++
  EHT98367.1   8 LAWQILIALVLGIIVGAVlhnqpDDREWLVnNILSPAGDIFIHLIKMIVVPIVISSLIVGIAGVGDAKKLGRIGLKTIVYFEVITTVAIVVGITLANVF 106
                 689*************99***98667766625568**************************************************************** PP

         SDF  94 kpg...........selaleassakeaekketdslldlilslipsnifealaegnvlavivfailfGialaalgekg.epllkffeslnevvmkvvkiv 180
                 kpg           +    + +++ ++ ++ t+sl  +ilslip+nif+a+a+g++l++i+f++lfG++l+al  ++ +pl+++f  ++e ++kv++++
  EHT98367.1 107 KPGtgidmstlatvD--ISKYEATTAQVQEGTHSLVATILSLIPQNIFAAMAKGEMLPIIFFSVLFGLGLSALPSEQrDPLVNLFRGVSETMFKVTHMI 203
                 ***999997765321..22223333333445789***************************************98777********************* PP

         SDF 181 mklaPigvfaliaslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpalltAfsTaSSaAtLPvtlecaeknlgvsesi 279
                 m++aP+gvfalia ++a++g+ +l +lak++l+vy+++++++++vl ++++ ++k+++ ++++ + + l++++sT+SS+ +LP  +e++e  +g ++ i
  EHT98367.1 204 MRYAPVGVFALIAVTIANFGFASLWPLAKLVLLVYVAILFFAFVVLGAVAR-FCKLRITTLMRILKDELILSYSTSSSETVLPRIMEKMEA-YGAPKAI 300
                 *************************************************99.8999***********************************.8****** PP

         SDF 280 asfvlPlGatinmdGtalyeavaaifiaqlfgvelslgqllllvlvatlasiGaagvPgaglvalllvlsalglpvegialilaidrllDmfrTavNvt 378
                 +sfv+P+G+++n+dG++ly+++aaifiaql+g++lsl++ ++lvl+++++s G+agvPg ++v+ll++l ++g+p+eg+a+i+++dr++Dm+rTa+Nv+
  EHT98367.1 301 TSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSLTDEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRIMDMARTALNVV 399
                 *************************************************************************************************** PP

         SDF 379 Gdavaalivakl 390
                 G+a+a l++a++
  EHT98367.1 400 GNALAVLVIARW 411
                 *********997 PP

>> DUF3806  Domain of unknown function (DUF3806)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1     9e-05      0.54      23      44 ..      16      37 ..      10      39 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9e-05
                HHHHHHHHHHHHHHSTT-EEEE CS
     DUF3806 23 qalGvalGdiLvnemdgmeWvt 44
                 +lG+++G++L n+ d+ eW +
  EHT98367.1 16 LVLGIIVGAVLHNQPDDREWLV 37
                689*****************87 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.3   0.00029       1.7       2     106 ..       5     109 ..       4     145 .. 0.80
   2 ?    6.2   2.4    0.0012       7.4      53      99 ..     206     255 ..     159     293 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00029
                  XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX.....................XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   2 kyllfffnllfwligivllavGvwlrl.khaeaalacllsesaedpailaillivvGv..llfllgflGcigalkenkcllltfsllllvlfllelaa 96 
                  k++l +  l+ +++gi++ av   l    ++ ++l ++  + a d  i  i +ivv +    +++g++G+  a k  ++ l t + + ++  ++ ++ 
   EHT98367.1   5 KISLAWQILIALVLGIIVGAV---LHNqPDDREWLVNNILSPAGDIFIHLIKMIVVPIviSSLIVGIAGVGDAKKLGRIGLKTIVYFEVITTVAIVVG 99 
                  677788888888888877776...32256667889999999999999999*******955669******999*************9999999999998 PP

                  XXXXX--HHH CS
                  xxxxxxxxxx RF
  Tetraspanin  97 gilgfvfsdk 106
                  + l+ vf+  
   EHT98367.1 100 ITLANVFKPG 109
                  8899999866 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0012
                  XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  53 livvGv...llfllgflGcigalkenkcllltfsllllvlfllelaagil 99 
                  +  vGv   + + ++ +G+   +   k +ll+++ +l++ f+++ a++ +
   EHT98367.1 206 YAPVGVfalIAVTIANFGFASLWPLAKLVLLVYVAILFFAFVVLGAVARF 255
                  334444323677788899******************99999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3185.54
//
Query:       EHT98368.1  [L=347]
Description: N-acetylmuramic acid 6-phosphate etherase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   41.7   0.4    3.3e-10   40.1   0.4    1.9  1  SIS_2     SIS domain
    4.5e-09   36.3   0.9    1.4e-08   34.7   0.0    2.1  2  SIS       SIS domain
  ------ inclusion threshold ------
       0.13   11.5   0.1        0.2   10.9   0.1    1.2  1  Cas_Csy3  CRISPR-associated protein (Cas_Csy3)


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.4   5.5e-14   3.3e-10      14     137 ..      87     211 ..      77     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 5.5e-14
                 HHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST...THHHHHTT-TTHHHHHHHHTT--TT-EEEEE- CS
       SIS_2  14 vetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda.eatkssalerdegyakqilrlvrlkpgDvLlviS 111
                 ve+   ai++a+++i ++ ++gg+++  G+G S  l +  a ++   +++ +   + l+    +  +++ +++e     + q l++  ++++DvL+ i 
  EHT98368.1  87 VEAIVPAIARAVDIICAAFQAGGRLIYVGAGTSGRLGILDASECPPTFGTPPEQVTGLIAGGHQaILQAVENAEDNVAQGAQDLKDIHFSQQDVLVGIA 185
                 467789***************************98888888888888888887777777766543444455555555555666777899********** PP

                 SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2 112 nsGnnavvveaaeaakergmkviAlt 137
                 +sG+ + v+ a+ +a+++g+ ++Alt
  EHT98368.1 186 ASGRTPYVLGALDYARQCGAMTVALT 211
                 *************************9 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.22   1.3e+03       7      18 ..     110     121 ..     105     123 .. 0.80
   2 !   34.7   0.0   2.3e-12   1.4e-08      51     130 ..     175     256 ..     160     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.22
                 EEEEEESHHHHH CS
         SIS   7 riyvlGaGtsya 18 
                 r++++GaGts+ 
  EHT98368.1 110 RLIYVGAGTSGR 121
                 99********86 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 2.3e-12
                 -STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC..SSSHCHHHHHHHHHHHHHHH CS
         SIS  51 ideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet..lvastksltaqlaaldalav 130
                  +++d+++ i+ sg+t+ ++ a+ +a++ ga+++a+T++++s +a  ad+al+  ++pe+  +   +k+ taq ++l++l++
  EHT98368.1 175 FSQQDVLVGIAASGRTPYVLGALDYARQCGAMTVALTCNPHSKMADVADIALTPVVGPEVvtGSSRMKAGTAQKLVLNMLTT 256
                 5789*********************************************************99999***********99975 PP

>> Cas_Csy3  CRISPR-associated protein (Cas_Csy3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.4e-05       0.2     116     198 ..      16      97 ..       5     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.4e-05
    Cas_Csy3 116 kyiekegfkelakRYaeNlangRfLWRNrvgaekievqvkaleke..kekswefdalels..lrsfeeesedlkelakliakalsge 198
                 + ++  g +e   R ++N+ n  fLWR  v  +     ++++ +e  +  s+++d+++++  lr +++e+++++   + i  a++  
  EHT98368.1  16 RHKKAAGKDEFFIRCVKNIQNKLFLWRTSVKID-----LSQMVTEgrNPVSLNIDEMSTEamLRVINDEDKKVALAVEAIVPAIARA 97 
                 6677888999999**************866544.....4433333113356667776665668888888888888778887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2751.78
//
Query:       EHT98369.1  [L=474]
Description: PTS system N-acetylmuramic acid-specific EIIBC component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-32  112.9  25.7    1.5e-32  112.9  25.7    2.1  2  PTS_EIIC  Phosphotransferase system, EIIC
    8.7e-11   41.1   0.1    1.7e-10   40.2   0.1    1.5  1  PTS_EIIB  phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9  25.7   1.7e-36   1.5e-32       4     322 ..     119     399 ..     116     401 .. 0.86
   2 !    2.5   3.6    0.0067        60      79     140 ..     404     465 ..     397     469 .. 0.72

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 1.7e-36
    PTS_EIIC   4 fmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvllla 102
                 f++ ip +ia+G+llg++ l + ++l++ ++ +   +l  + + +k+++++ f++L++l+++++ +++  gg+gv g+ ++  +l        +++   
  EHT98369.1 119 FTPLIPGFIAAGLLLGFATLIE-QSLHLSTPGAHPAGLLHTVAYMKVFSKGLFTFLSILIGYNAQKAF--GGTGVNGAIIASLFLL-------GYV--- 204
                 99*****************544.344443443444455556669************************..9****94444333333.......223... PP

    PTS_EIIC 103 agalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsgsl 201
                  +a++ ++ ++++++ l+    g ii +llaa++  ++e+ +++ +P++l+++++  ++ +it+ +++l+++++++ +++++++++++      +++s 
  EHT98369.1 205 PDAKVGYYSGMDSFFGLTIDPRGNIIGVLLAAMFGGWLERQLRKVIPDNLDMILTALLTLLITGALTYLLIMPLGGELFEGMSWLFIH------LNNSC 297
                 33334589**********************************************************************9999999977......78889 PP

    PTS_EIIC 202 lgvlifgflerllipfGlHhafiapfwftsa.ggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflfG 299
                 +g++++++l+ + ++fG+H++fi++   ++  +g++                     f+  +++g+g+  a+++ + ++ k + +++ +++a++p+l+G
  EHT98369.1 298 FGCALLAGLFLIAVMFGIHQGFIPVYFALMEtQGFNS-------------------LFPVLAMAGAGQVGAALALWCKAEKGALLRTQIKGAIVPGLLG 377
                 ***********************99888776344444...................5999*************************************** PP

    PTS_EIIC 300 ItepleFgfpfvlnlllfipall 322
                 + epl++g+ +   ++ fi+a+ 
  EHT98369.1 378 VGEPLIYGVTLPRLRP-FITACG 399
                 **********999999.999875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.0067
    PTS_EIIC  79 aglagligllafnl.laaisvlllaagala.sakasilgiktlstgvfgaiivgllaaylynkf 140
                    +++igl+a+      ++ ++ ++g+++ +  +s  gi++++  ++g++iv+ ++++++ ++
  EHT98369.1 404 G--GFFIGLVAWLGlPVGMNTVFGPSGLVTlPLMTSHQGIFAGMAVYLGGLIVAWVSGFVLTWW 465
                 3..6777777766503355666666666559888999999999999999999999999998765 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   1.9e-14   1.7e-10       2      30 ..      11      39 ..      10      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.9e-14
                HHHHHH-.GGGEEEEEE-SSEEEEEES-G CS
    PTS_EIIB  2 eIldalGGkdNIesvthCaTRLRltlkDa 30
                +I++a GG+dNI    hC+TRLRltlk +
  EHT98369.1 11 AIVQAAGGADNIAVCGHCMTRLRLTLKQN 39
                79************************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3687.02
//
Query:       EHT98370.1  [L=69]
Description: hypothetical protein CKS_4725 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-10   38.7   3.3      9e-10   38.4   3.3    1.1  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
      0.023   14.7   3.3      0.026   14.5   3.3    1.1  1  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   3.3     1e-13     9e-10       6      56 .]      24      69 .]      22      69 .] 0.92

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1e-13
                EEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  6 tisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                t++++   ++++++e++++++A+ +GA +Y It+a++  ++ +h tAelYK
  EHT98370.1 24 TVTAT--GSTLDSAEAKIAAQAQDAGA-SYKITEANT--NNGVHMTAELYK 69
                56666..9******************9.58*******..999********9 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.3   2.9e-06     0.026       2      51 ..       7      55 ..       6      66 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-06
     PepSY_2  2 aalalalallaaaAlAgrrdtdspkadwlpreklvakleaqGykvkkiev 51
                +a+++al++l aaA+A+  + +  + d   ++k+ a+++++G + k +e+
  EHT98370.1  7 FAALIALTILPAAAFAQTVTATGSTLDS-AEAKIAAQAQDAGASYKITEA 55
                7899************666666666665.589999999888865444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 600.63
//
Query:       EHT98371.1  [L=415]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-160  532.3  14.7   5.7e-160  531.9  14.7    1.1  1  SbmA_BacA       SbmA/BacA-like family
    2.3e-13   50.2   3.3    8.7e-13   48.3   3.3    1.9  1  ABC_membrane_2  ABC transporter transmembrane region 2
  ------ inclusion threshold ------
        5.8    6.6   9.5       0.25   11.0   2.5    2.3  2  DUF1673         Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> SbmA_BacA  SbmA/BacA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.9  14.7  9.5e-164  5.7e-160       1     314 [.      85     398 ..      85     399 .. 0.99

  Alignments for each domain:
  == domain 1  score: 531.9 bits;  conditional E-value: 9.5e-164
   SbmA_BacA   1 dkkWqlWsilgtalilfvlyfqvevsvkvnaWygpfydliqkalaapekvtieefyaelldfllialvavviavlnaffvshyifrWrtamneyyiskw 99 
                 +++Wq+Ws++g+ali+fv++f v+v v+vnaWygpfydliqkal+++++v+i+efya+++ fl ial+avvi+v+naff+sh++frWrtamn+yy+++w
  EHT98371.1  85 NHPWQRWSVWGSALIIFVTWFGVQVGVAVNAWYGPFYDLIQKALTKAGSVQIAEFYAQVIAFLGIALIAVVIGVMNAFFISHWVFRWRTAMNNYYMHHW 183
                 699************************************************************************************************ PP

   SbmA_BacA 100 dklreieGasqrvqedtmrfakiledlGvslvkaimtliaflPvlfelskkvkvlpilgeiekslviaalvwslgGtvlllvvGiklpglefnnqkvea 198
                 ++lr++eGa+qrvqedtmrfa++le  Gvs+++aimtl+aflPvl+ ls++vk++pilg+i+++lviaa++wsl+Gt+ll++vGiklpglef+nq+vea
  EHT98371.1 184 QRLRHVEGAAQRVQEDTMRFATTLEGWGVSFIQAIMTLVAFLPVLVALSHHVKSIPILGSIPYALVIAAVLWSLFGTALLALVGIKLPGLEFRNQRVEA 282
                 *************************************************************************************************** PP

   SbmA_BacA 199 ayrkelvygeddvdrakpatlkelfkdvrknyfrlylhylyfniarilylqldnlfallllapsivagkitlGvlkqitnafgkvreslqylinsWtti 297
                 ayrkelvyged++dra+p t+k lf++vr nyfrly+hylyfni rilylq+dn+f+l+ll+psivag+itlG+l+qitn+f++vr+s+qyli+sW+t+
  EHT98371.1 283 AYRKELVYGEDHADRATPPTVKVLFHNVRINYFRLYFHYLYFNISRILYLQVDNVFGLFLLFPSIVAGAITLGLLNQITNVFDQVRGSFQYLITSWSTL 381
                 *************************************************************************************************** PP

   SbmA_BacA 298 vellsiykrlrafeski 314
                 vel+siykrlr+fe+ +
  EHT98371.1 382 VELMSIYKRLRSFEQIL 398
                 **************976 PP

>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   3.3   1.5e-16   8.7e-13      11     201 ..      91     289 ..      82     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.5e-16
  ABC_membrane_2  11 skeallllvlllllvlrtllsvlvaqldgklvkalva.......knvraFvlsllkfallavpasfvnsalkYltqkLalafRkrLtkhllseYl 98 
                     + ++++  ++++++ + + + v v+ + g ++  +++        + ++F+ +++ f+ +a++a+++ ++  ++ +    ++R+ ++++++ ++ 
      EHT98371.1  91 WSVWGSA-LIIFVTWFGVQVGVAVNAWYGPFYDLIQKaltkagsVQIAEFYAQVIAFLGIALIAVVIGVMNAFFISHWVFRWRTAMNNYYMHHWQ 184
                     4455544.455666777888899999999999999999999999999********************************************9995 PP

  ABC_membrane_2  99 knrtyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgl............lllllyvllatvilriigpp 181
                     +      + +    ++ + qr+++D  +F+ +l     + +++i++++ f   L+ ls   +             ++++l  l++t++l ++g +
      EHT98371.1 185 R------LRH----VEGAAQRVQEDTMRFATTLEGWGVSFIQAIMTLVAFLPVLVALSHHVKSipilgsipyalvIAAVLWSLFGTALLALVGIK 269
                     4......334....5669************************************999999888899******9877778888999********** PP

  ABC_membrane_2 182 lgklvaeeeklegefRylhs 201
                     l  l +++++ e+++R +++
      EHT98371.1 270 LPGLEFRNQRVEAAYRKELV 289
                     ****************9887 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.5   4.1e-05      0.25      70     114 ..     140     186 ..     122     263 .. 0.85
   2 ?   -1.8   0.7      0.36   2.1e+03      80      80 ..     348     348 ..     301     398 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
     DUF1673  70 sllvltqlGinlialligll..lsllliiltwkkqmqiyddikralv 114
                 +  v+ +lGi+lia++ig++  ++++  ++ w++ m  y  ++ ++ 
  EHT98371.1 140 YAQVIAFLGIALIAVVIGVMnaFFISHWVFRWRTAMNNYYMHHWQRL 186
                 5568899*************9999999**********9997765544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
     DUF1673  80 n 80 
                 +
  EHT98371.1 348 V 348
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.34
# Mc/sec: 3631.90
//
Query:       EHT98372.1  [L=243]
Description: gluconate 2-dehydrogenase, membrane-bound, gamma subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-39  132.9   0.1    1.2e-38  132.4   0.1    1.2  1  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
  ------ inclusion threshold ------
       0.19   10.6   0.0       0.26   10.1   0.0    1.1  1  Peptidase_C69    Peptidase family C69


Domain annotation for each model (and alignments):
>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.1   1.3e-42   1.2e-38       2     136 .]      62     216 ..      61     216 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 1.3e-42
  Gluconate_2-dh3   2 eqaallaaladrIiPstdt.gpgakeagvaafidrqlad.........................aplppeqeayrkglaaldayaraeygksFv 69 
                      e++ +++a+++r+iP+ d+ gpga eagv++fidrq+++                          pl   q+ yr gla+ d+y+r++ygk F+
       EHT98372.1  62 EEFVFINAAVARLIPA-DErGPGALEAGVPEFIDRQMNTpyatganwymqgpfnpdlpkemgyqLPLVL-QQIYRLGLADADQYSRQQYGKVFA 153
                      8999************.777*****************************************98655555.************************ PP

  Gluconate_2-dh3  70 eldgaqqdalLealekeaeakgtgealeasaeahfFsllreltlegyftspigggna..lgwrligfpG 136
                      +l+++qqda L+a+e + +a  ++ +l+as    fFs l+++t eg+f++pi+ggn+  +gw+li+fpG
       EHT98372.1 154 QLNAEQQDAALQAMESG-KA--HFSQLPASV---FFSYLLQNTREGFFSDPIHGGNQgmVGWKLINFPG 216
                      *****************.54..678899999...**********************************9 PP

>> Peptidase_C69  Peptidase family C69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     3e-05      0.26     235     289 ..      96     149 ..      91     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3e-05
  Peptidase_C69 235 kkdrryntpRvWylqrklnPeieqdpesedlplivkperKisvedvkyvlssHye 289
                    + ++ y+t   Wy+q  +nP++  ++   +lpl+ +   ++ ++d ++  ++ y 
     EHT98372.1  96 QMNTPYATGANWYMQGPFNPDLP-KEMGYQLPLVLQQIYRLGLADADQYSRQQYG 149
                    55677899999***********9.8899*****************9998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2106.16
//
Query:       EHT98373.1  [L=594]
Description: gluconate 2-dehydrogenase, membrane-bound, flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-22   79.5   0.0    7.6e-22   78.4   0.0    1.6  1  GMC_oxred_C    GMC oxidoreductase
    1.2e-11   44.6   0.0    2.7e-10   40.1   0.0    2.4  2  GMC_oxred_N    GMC oxidoreductase
     0.0026   17.9   0.7      0.077   13.2   0.0    3.2  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.011   14.9   0.0       0.12   11.4   0.0    2.1  2  FAD_binding_2  FAD binding domain
      0.013   14.8   0.0      0.032   13.5   0.0    1.6  2  FAD_binding_3  FAD binding domain
      0.021   14.1   0.0       0.12   11.6   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.037   13.1   0.0      0.058   12.4   0.0    1.3  1  Lycopene_cycl  Lycopene cyclase protein
       0.09   12.1   0.0       0.17   11.3   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   3.4e-25   7.6e-22       4     141 ..     450     573 ..     447     575 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 3.4e-25
                  -EEEEEST..T-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-ST CS
  GMC_oxred_C   4 rGrvtlss..sdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGad 99 
                   +++ l+   +d++g+pl++++++++++d++++  ++ +++ki++a++   +     +++ + ++d++v++++              H++G++ MG+d
   EHT98373.1 450 VNYLDLDPnyKDAYGQPLLRMTFDWQENDIKMAQFMVGKMHKIAEAMN--PKMIIGGAKKPGTHFDTTVYQTT--------------HISGGAIMGED 531
                  5888899899*************************************4..55555666666778888888888..............*********** PP

                  CGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHH CS
  GMC_oxred_C 100 pkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalA 141
                  pk+s+V+ +l++++v+n++V +aS+fP+ +g npt  ++al+
   EHT98373.1 532 PKTSAVNRYLQSWDVPNVFVPGASAFPQGLGYNPTGMVAALT 573
                  ***************************************997 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.058   1.3e+02       1      38 [.       8      44 ..       8      97 .. 0.78
   2 !   40.1   0.0   1.2e-13   2.7e-10     153     292 ..     202     348 ..     141     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.058
  GMC_oxred_N  1 vdelveggGsagsvvAaRLsedpstsvlvleaggrekn 38
                 vd++++g G ag+ +A+ L+e +  +vl+le g++   
   EHT98373.1  8 VDAVIVGFGWAGAIMAKELTEAG-LNVLALERGPHRDT 44
                 5899****************987.68999999997544 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 1.2e-13
  GMC_oxred_N 153 nkallkaaeelGlp................vprdlngkhqcGvcllgvtcrtgarqstarawLrpalerpnleiltgakaekiilegrkkravGVeas 234
                   + + +aae++G+                     ++ ++ cG+c     c    + s   + L+   ++p  e+  +a++ ++ l + kkra+GV++ 
   EHT98373.1 202 AQLFAQAAESVGYHpydlpsantsgpytntYGAQMGPCNFCGYCSGY-ACYMYSKASPNVNILPALRQEPKFELRNNAYVLRVNLTDDKKRATGVTYV 298
                  57788888888888888877777776544444455556888888755.8************************************99*********** PP

  GMC_oxred_N 235 dkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGknLq 292
                  d +g   + v  a+ v+++a  + + +l+++SG+G+  +       ++ + + vG+n+ 
   EHT98373.1 299 DAQGR--EHVQPADLVILSAFQFHNVHLMLLSGIGQPYN-------PITNEGtVGRNFA 348
                  ***99..888888*********************99999.......9999999****97 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.5e-05     0.077       1      30 [.      12      41 ..      12      42 .. 0.97
   2 ?    1.0   0.1      0.23   5.3e+02      41      56 ..     382     397 ..     367     401 .. 0.73
   3 ?   -1.8   0.0       1.7   3.8e+03      19      37 ..     511     529 ..     505     550 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   IvG G +G+ +A +L++ag++vl le++++
     EHT98373.1 12 IVGFGWAGAIMAKELTEAGLNVLALERGPH 41
                   9**************************987 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.23
                    TTCEECTS---EEETT CS
  NAD_binding_8  41 pgvrvdygahifhgsg 56 
                    +   +d+g+h f g++
     EHT98373.1 382 NADNFDHGPHGFVGGS 397
                    44789******99865 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.7
                    TEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8  19 gfdvlllekrdrlGGraas 37 
                    +fd +++++ +  GG +  
     EHT98373.1 511 HFDTTVYQTTHISGGAIMG 529
                    6899999999888887655 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.4e-05      0.12       1      33 [.       9      41 ..       9      45 .. 0.94
   2 ?    0.8   0.0      0.09     2e+02     154     205 ..     269     323 ..     254     367 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.4e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D++++G G AG   A e++eaGl+v+ +e ++ 
     EHT98373.1  9 DAVIVGFGWAGAIMAKELTEAGLNVLALERGPH 41
                   89***************************9885 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.09
                    CT.EEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEESEEEE-----GG.. CS
  FAD_binding_2 154 ag.vdfqerteadeLivedg..rvtGavvenpesgrevrirakavvlatgGfgr.a 205
                     +  ++++++++++++ +d+  r+tG++   +++gre+   a+ v+l +  f++ +
     EHT98373.1 269 EPkFELRNNAYVLRVNLTDDkkRATGVTYV-DAQGREHVQPADLVILSAFQFHNvH 323
                    44588999999999999877789***9988.6777777778899999999888752 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.4e-05     0.032       2      35 ..       8      41 ..       7      53 .. 0.85
   2 ?   -2.8   0.0       1.2   2.8e+03     225     282 ..     432     490 ..     422     491 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   +d +IVG G aG++ a++L+eaG +v+ +e+   
     EHT98373.1  8 VDAVIVGFGWAGAIMAKELTEAGLNVLALERGPH 41
                   899***************************9544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                    EEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEE.EEEEEEEEESSSE CS
  FAD_binding_3 225 rfyvqvearaekeersekfteeevkarlreivgektldveieevs.awtvaqrvaekyr 282
                     ++ +++++a+ + +s +++  ++  +++ + g++ l+  +++ +   ++aq+++ k++
     EHT98373.1 432 TYTHHLSMDAHGAHQSYRVNYLDLDPNYKDAYGQPLLRMTFDWQEnDIKMAQFMVGKMH 490
                    56667778888888888888888888888888888888888886415777777777776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.12       2      31 ..       9      41 ..       8      79 .. 0.87
   2 ?   -1.4   0.0       0.5   1.1e+03     259     278 ..     536     556 ..     528     571 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE...T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve...l 31
                 d v++G G+AG  +a++l +ag++v+ +e    
   EHT98373.1  9 DAVIVGFGWAGAIMAKELTEAGLNVLALErgpH 41
                 679***********************9973332 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.5
                  E--TTSBES.STTEEE-GGGC CS
                  xxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 259 vvdeflrtn.vpgiyaiGDva 278
                   v+++l++  vp++++ G+ a
   EHT98373.1 536 AVNRYLQSWdVPNVFVPGASA 556
                  6999**9966******99988 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05     0.058       1      35 [.       9      41 ..       9      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   D v++G G Ag  +A++l   ++gl+v+ +e +p+
     EHT98373.1  9 DAVIVGFGWAGAIMAKEL--TEAGLNVLALERGPH 41
                   88****************..999********9986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.4e-05      0.17      31      88 ..       2      57 ..       1      61 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.4e-05
                  BS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHH CS
  2-Hacid_dh_C 31 gkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleel 88
                   +el++    i+G+G  G  +ak l++ g++v+a +r +++++     g + +s++el
    EHT98373.1  2 ANELKKVDAVIVGFGWAGAIMAKELTEAGLNVLALERGPHRDT--YPDGSYPQSIDEL 57
                  578999999****************************988554..5556666777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4813.96
//
Query:       EHT98374.1  [L=436]
Description: gluconate 2-dehydrogenase, membrane-bound, cytochrome c [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-24   84.4   0.0    2.5e-07   31.8   0.0    3.7  3  Cytochrom_C      Cytochrome c
    1.2e-21   76.8   0.4    2.3e-08   34.2   0.0    4.0  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    1.8e-06   27.5   2.0       0.33   10.8   0.0    3.4  3  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
    0.00038   20.4   0.1         12    5.9   0.0    3.2  3  Cytochrome_C7    Cytochrome c7 and related cytochrome c
     0.0029   16.3   0.1        0.3    9.7   0.0    2.7  3  DHOR             Di-haem oxidoreductase, putative peroxidase
  ------ inclusion threshold ------
       0.18   11.7   0.3        7.9    6.4   0.0    3.3  4  Haem_bd          Haem-binding domain
       0.47   11.1   1.7         31    5.2   0.1    3.3  4  CCP_MauG         Di-haem cytochrome c peroxidase


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   4.8e-10   1.2e-06       2      90 ..      28     126 ..      27     127 .. 0.67
   2 !   18.9   0.0   9.8e-07    0.0025       2      91 ..     175     287 ..     174     288 .. 0.72
   3 !   31.8   0.0   9.6e-11   2.5e-07       3      91 ..     315     400 ..     313     401 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 4.8e-10
                  --HHHHH.HTTGGGTB-SSSBSSS...............--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHH.HGGGGGGG.TT--HHHHHHHHH CS
  Cytochrom_C   2 arGkelf.tanCaaCHgvegggakqgg...........gptlsgaaerasaasigasvanpaavsaprddfekkk.ltaemparkerlteqeiadlaa 86 
                  +rG+ l  + +C+aCH+ egg+  +gg           + +++   ++  +++     ++  +  + +++ + ++ + + ++a    ++++++++l+a
   EHT98374.1  28 KRGEYLArAGDCVACHSSEGGKPFAGGlpmatpigtiySTNITPDKSTGIGDYSYDDFQKAVRHGIAKNGDTLYPaMPYPSYA---VVSDEDMKALYA 122
                  7899999899**************99999999999999555554444444444444444443333333333333302333344...5*********** PP

                  HHHT CS
  Cytochrom_C  87 YLks 90 
                  Y ++
   EHT98374.1 123 YFMH 126
                  *995 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 9.8e-07
                  --HHHHH.H.TTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG......................... CS
  Cytochrom_C   2 arGkelf.t.anCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaempark........................ 73 
                  arG+ l+    +C aCH+++    ++    +l++a + +  a   a ++   a+ + +d++ +   ++e   r+                        
   EHT98374.1 175 ARGRYLVeGlGHCGACHTPRSVTMQE---KALTNADSNDYLAGSSAPIDGWTASNLRGDNRDGLGRWSEHDLRQflrygrndhtsafggmvdvvdhsl 269
                  67777774345******999998875...566666666655555555555555555566666666666666655666666777777778888899*** PP

                  TT--HHHHHHHHHHHHTT CS
  Cytochrom_C  74 erlteqeiadlaaYLksl 91 
                  ++lt+++i ++a YLksl
   EHT98374.1 270 QHLTDDDITAIARYLKSL 287
                  ****************97 PP

  == domain 3  score: 31.8 bits;  conditional E-value: 9.6e-11
                  -HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   3 rGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLksl 91 
                   G+ ++ + CaaCH+ +g g +   +p+l+g+      +    +      v     + +++++t  mpa+  rl++q++ad+++++++ 
   EHT98374.1 315 TGAVAYIDSCAACHKTDGSGYTRF-YPALRGNPVVMADDPTSLIHIVL--VGGELRGVKGAPSTITMPAFGWRLNDQQVADVVNFIRHS 400
                  68889955**************99.*******9988888888877777..77888889999999**********************975 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.5e-09   1.1e-05       3      66 ..      27     123 ..      25     124 .. 0.73
   2 !   12.4   0.1   5.7e-05      0.15       3      67 .]     174     284 ..     172     284 .. 0.73
   3 !   34.2   0.0   8.9e-12   2.3e-08       4      67 .]     314     397 ..     311     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.5e-09
  Cytochrome_CBB3   3 aaaGaalykk.nCasCHgkggag.....................psla.gr.dwepdalvdiiknGk...g.....aMpafgg.qlsdeelwal 63 
                      +++G++l ++ +C++CH ++g+                      p+++ g  d ++d +++++++G+   g     aMp      +sde+ +al
       EHT98374.1  27 IKRGEYLARAgDCVACHSSEGGKpfagglpmatpigtiystnitPDKStGIgDYSYDDFQKAVRHGIaknGdtlypAMPYPSYaVVSDEDMKAL 120
                      789999*9999******9554444666788888777777766665555444566669999999999754314455599977767********** PP

  Cytochrome_CBB3  64 vaY 66 
                      +aY
       EHT98374.1 121 YAY 123
                      **9 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.7e-05
  Cytochrome_CBB3   3 aaaGaalykk..nCasCHgkggag...........................pslagr......dwepdalvdiiknG.......kgaMpafgg. 53 
                      +a+G++l +   +C +CH++  +                             +l+g+       w++  l++++++G       +g+M +  + 
       EHT98374.1 174 LARGRYLVEGlgHCGACHTPRSVTmqekaltnadsndylagssapidgwtaSNLRGDnrdglgRWSEHDLRQFLRYGrndhtsaFGGMVDVVDh 267
                      688999999888*******665555566677888888888888777777776666443344466666999999999944444444799977777 PP

  Cytochrome_CBB3  54 ...qlsdeelwalvaYl 67 
                         +l+d+++ a++ Yl
       EHT98374.1 268 slqHLTDDDITAIARYL 284
                      78899*********997 PP

  == domain 3  score: 34.2 bits;  conditional E-value: 8.9e-12
  Cytochrome_CBB3   4 aaGaalykknCasCHgkggag.....pslagr....dwepdalvdiiknG......kg.....aMpafggqlsdeelwalvaYl 67 
                      ++Ga  y  +Ca+CH+++g g     p+l+g+    + +p  l +i+  G      kg      Mpafg +l+d++++++v+++
       EHT98374.1 314 QTGAVAYIDSCAACHKTDGSGytrfyPALRGNpvvmADDPTSLIHIVLVGgelrgvKGapstiTMPAFGWRLNDQQVADVVNFI 397
                      789999**********9*9***********88775455589****9999966666523444567******************98 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00013      0.33       5      19 ..      35      49 ..      33      60 .. 0.82
   2 !    7.6   0.1    0.0012       3.2       7      30 ..     185     209 ..     181     211 .. 0.73
   3 !    7.0   0.0    0.0019       4.9       8      19 ..     323     334 ..     317     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  Paired_CXXCH_1  5 aegeClsCHnphgsd 19
                    ++g+C +CH+  g++
      EHT98374.1 35 RAGDCVACHSSEGGK 49
                    689********9984 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
  Paired_CXXCH_1   7 geClsCHnphgs.dnpkllkkakga 30 
                     g C +CH p +   ++k l++a+ +
      EHT98374.1 185 GHCGACHTPRSVtMQEKALTNADSN 209
                     57*****999884466666577766 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0019
  Paired_CXXCH_1   8 eClsCHnphgsd 19 
                     +C +CH++ gs 
      EHT98374.1 323 SCAACHKTDGSG 334
                     6*****999985 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        28      13      56 ..      36      45 ..      19      65 .. 0.69
   2 !    5.9   0.0    0.0049        12      15      60 ..     186     197 ..     162     214 .. 0.67
   3 !    5.6   0.0    0.0061        15      45      56 ..     318     330 ..     289     341 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
  Cytochrome_C7 13 gykCtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdg 56
                   +++C +CHs                                  +
     EHT98374.1 36 AGDCVACHS----------------------------------S 45
                   344555554..................................4 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0049
  Cytochrome_C7  15 kCtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdgknaf 60 
                    +                                  CgaCH+ + + 
     EHT98374.1 186 H----------------------------------CGACHTPRSVT 197
                    3..................................77777666554 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0061
  Cytochrome_C7  45 ves.ltCgaCHdg 56 
                    v    +C+aCH+ 
     EHT98374.1 318 VAYiDSCAACHKT 330
                    2333348888875 PP

>> DHOR  Di-haem oxidoreductase, putative peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.39     1e+03      69      80 ..      36      47 ..      15      50 .. 0.72
   2 !    3.5   0.0    0.0084        22     354     391 ..     170     208 ..     166     219 .. 0.77
   3 !    9.7   0.0   0.00012       0.3      45      89 ..     293     341 ..     267     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.39
        DHOR 69 nasCnsChakdG 80
                + +C +Ch  +G
  EHT98374.1 36 AGDCVACHSSEG 47
                457888888776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0084
        DHOR 354 edaevieGaklFeqvg.CaeChtpkfttkaedeisglhl 391
                 ed +  +G+ l e +g C +Chtp+ +t  e+++++   
  EHT98374.1 170 EDPTLARGRYLVEGLGhCGACHTPRSVTMQEKALTNADS 208
                 56677788888888766***********88887776655 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00012
        DHOR  45 fetdfttapnses....aeldgLGpvfnnasCnsChakdGRsstpvlea 89 
                 ++ +f+++ ++++     +  + G+v    sC +Ch+ dG + t   +a
  EHT98374.1 293 HQVAFSVDDATAKalwkGDDSQTGAVAYIDSCAACHKTDGSGYTRFYPA 341
                 66677666555554555667789***99************999877665 PP

>> Haem_bd  Haem-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0031       7.9      41      62 ..      38      59 ..      27      63 .. 0.87
   2 ?    0.0   0.1       0.3   7.7e+02      41      50 ..     186     195 ..     184     205 .. 0.84
   3 ?   -3.4   0.0       3.5   8.9e+03     114     132 ..     267     285 ..     266     286 .. 0.86
   4 ?   -0.6   0.0      0.45   1.1e+03      40      48 ..     322     330 ..     297     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0031
     Haem_bd 41 sCydCHsnetelpwYakiapvs 62
                +C  CHs+e   p+   ++++ 
  EHT98374.1 38 DCVACHSSEGGKPFAGGLPMAT 59
                7************999888875 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.3
     Haem_bd  41 sCydCHsnet 50 
                 +C  CH++++
  EHT98374.1 186 HCGACHTPRS 195
                 7******987 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.5
     Haem_bd 114 hpeaklseeekqallewik 132
                 h+ ++l++++ +a+ +++k
  EHT98374.1 267 HSLQHLTDDDITAIARYLK 285
                 7778999****99999987 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.45
     Haem_bd  40 ksCydCHsn 48 
                  sC  CH  
  EHT98374.1 322 DSCAACHKT 330
                 79*****54 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.2     5e+02      23      35 ..      38      67 ..      32     144 .. 0.55
   2 ?    1.1   0.2      0.22   5.7e+02      23      37 ..     186     200 ..     171     218 .. 0.76
   3 ?   -2.5   0.0       2.9   7.3e+03     120     138 ..     273     291 ..     240     312 .. 0.67
   4 ?    5.2   0.1     0.012        31      23      35 ..     323     351 ..     311     422 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.2
                -HHHHSGCCCTT.................S CS
    CCP_MauG 23 sCasCHdpaagf.................t 35
                 C  CH+ + g                  t
  EHT98374.1 38 DCVACHSSEGGKpfagglpmatpigtiysT 67
                6999**754333343334444444444430 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                 -HHHHSGCCCTTS-S CS
    CCP_MauG  23 sCasCHdpaagftdg 37 
                  C  CH+p+  + ++
  EHT98374.1 186 HCGACHTPRSVTMQE 200
                 6*****998766444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHTT--STT CS
    CCP_MauG 120 faniakAiaayertlvsae 138
                  ++ ++Aia+y ++l +++
  EHT98374.1 273 TDDDITAIARYLKSLGAKD 291
                 4455678888888776554 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.012
                 -HHHHSGCCCTT................S CS
    CCP_MauG  23 sCasCHdpaagf................t 35 
                 sCa CH+ + ++                +
  EHT98374.1 323 SCAACHKTDGSGytrfypalrgnpvvmaD 351
                 8*****87655444444444444444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3135.91
//
Query:       EHT98375.1  [L=470]
Description: major facilitator family transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-34  118.6  28.6    1.1e-33  116.8  28.6    2.4  1  Sugar_tr  Sugar (and other) transporter
    5.5e-30  104.5  43.0    2.3e-22   79.4  20.7    2.2  2  MFS_1     Major Facilitator Superfamily
     0.0016   17.9   8.1     0.0016   17.9   8.1    2.2  2  MFS_4     Uncharacterised MFS-type transporter YbfB
     0.0064   15.1  31.3      0.076   11.6   4.0    3.7  3  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8  28.6   2.5e-37   1.1e-33       5     448 ..      42     470 .]      38     470 .] 0.83

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.5e-37
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-T CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsve 103
                  algg+ + Yd++  g+++t l +a  f++ ++        +++ +++s++++G ++G+ ++ +++drfGR+ ++++a + +   ++l+a+ +   s e
  EHT98375.1  42 LALGGFFELYDLFETGYISTGLLAAGIFHAGSAGILGI---TDQAAFASATFLGLFMGASLLTPFADRFGRRLTFICALAWYGFFSLLMAFQH---SAE 134
                 689*****************999776666666665555...599*************************************************...99* PP

                 GGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHH.HHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 104 vlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGil.vaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylve 200
                 ++i++R+lvGig+G++ v++ +y+sE  p++lR +   +  +   +    va ++ + + +++ + +gwr+ +   +v +l++ +++  lPES r+l +
  EHT98375.1 135 MVILCRFLVGIGLGVELVTIDTYLSEWVPTHLRNRAFAFSFFIQFLSVPtVALMSWWLMpQHILGLEGWRWVVIAGAVCSLIIWLVRKNLPESARWLAQ 233
                 *********************************9988777776666665255556666699999999******************************** PP

                 TT-HHHHHHHHHHHHHC....HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH... CS
    Sugar_tr 201 kgkeeeakevlaklrge....edadrelaeekdsleaeqeeekaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks... 289
                 +g++e+a +v++ +++     ++++         l ++q +   ++k+ ++ +    +r r+l+ v +++fq   G   + +  p +++  g s +   
  EHT98375.1 234 QGRHEDAHAVMSAMEKRcgivPGQH---------LTHSQPAAASDTKSRFRDIWaprYRNRTLMLVIMNFFQA-IGFYGFGNWLPALLSGQGTSIThsl 322
                 *************555543332222.........22222333333344444433344899*********9975.799999********99998877667 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHH.HHHHHSHTTTHHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwv.lvsElfpqsvRska 387
                 l++ +i+ +  + + +++ f++    + ++     +  ++++v++g  +l+  ++     + ++  i+ f++ f+  w ++ +  + +E+fp+++R+ a
  EHT98375.1 323 LYAFFITLAYPIGSLICGSFTSQLENKWQI-----VLSSLMTVVFG--TLFALQT-----NPVLLVICGFLITFSNAWLTCSYHaYQTEIFPTAIRARA 409
                 777777777777777777777776666555.....55567777777..4444454.....24677899999**********9962678*********** PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCC CS
    Sugar_tr 388 laiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleei 448
                   +++  + l++ + sll+ +i+++ g  +v ++ +  ++++++ v +f p t g tle i
  EHT98375.1 410 VGFCYSFSRLSTAFSSLLIGVILQHTGTHGVIAFIVLSMLMVMLSVGVFGPKTRGMTLENI 470
                 ***************************9******************************986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4  20.7   5.2e-26   2.3e-22      34     271 ..      82     350 ..      38     351 .. 0.76
   2 !   37.3  16.5   3.2e-13   1.4e-09      37     172 ..     323     459 ..     312     466 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 5.2e-26
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                 +   +++ +lg + ++ +l +++drfGrr +++++l+++++++ll++f +++  +++++r+l G+g g+ + ++ +++++w+p   r+ra+++      
  EHT98375.1  82 QAAFASATFLGLFMGASLLTPFADRFGRRLTFICALAWYGFFSLLMAF-QHSAeMVILCRFLVGIGLGVELVTIDTYLSEWVPTHLRNRAFAFSFFIQF 179
                 34468889**********************************888889.77777*************************************99999999 PP

       MFS_1 132 lGailgpllgglla.sslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee............................kgtgpaplv 197
                 l++   +l + +l+ +++     Wr+v ++ a+ sl+  +   +    ++++r+   + + e                            +++ ++   
  EHT98375.1 180 LSVPTVALMSWWLMpQHILglegWRWVVIAGAVCSLIIWL---VRKNLPESARWLAQQGRHEdahavmsamekrcgivpgqhlthsqpaaASDTKS--- 272
                 99999999999999655446999****8888888888733...33344444444444444447799999999999999998777765444444444... PP

       MFS_1 198 pawkallkdpvlw...illialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrl 271
                   ++ ++++++     +l+i+ ++ ++gf+g+  +lp  l +  g s   +ll+a ++  ++ ++++i + ++++l +++
  EHT98375.1 273 -RFRDIWAPRYRNrtlMLVIMNFFQAIGFYGFGNWLPA-LLSGQGTSithSLLYAFFITLAYPIGSLICGSFTSQLENKW 350
                 .45555555544123357777777778***********.5*******988666666666666666666677777777766 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 3.2e-13
       MFS_1  37 lltlyal..gaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 l+++ ++  ++ ++sl+ G+++  +  ++ ++l+ l+++++++l+++ ++ + ll+++ +l  +  ++l+ + +a+ +++fp   r+ra+g+ ++++ l
  EHT98375.1 323 LYAF-FItlAYPIGSLICGSFTSQLENKWQIVLSSLMTVVFGTLFAL-QTNPvLLVICGFLITFSNAWLTCSYHAYQTEIFPTAIRARAVGFCYSFSRL 419
                 3333.333499******************888888888888677776.88899********************************************** PP

       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllll 172
                 ++++  ll g+++++ g ++v  ++ + +l++++ ++++ 
  EHT98375.1 420 STAFSSLLIGVILQHTGTHGVIAFIVLSMLMVMLSVGVFG 459
                 *********************8888888888777555554 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   8.1   3.5e-07    0.0016      25     180 ..      77     235 ..      70     253 .. 0.80
   2 ?    0.7  11.7     0.057   2.5e+02       8     165 ..     299     457 ..     296     466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.5e-07
       MFS_4  25 lslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallf 123
                 l +++ +  a+a +lG ++Ga l +  + +   Rl+  ++l       l ma+ +s  +++l Rfl G++ +v lv + +   + +  + r+r  a+ f
  EHT98375.1  77 LGITDQAAFASATFLGLFMGASLLTPFADRFGRRLTFICALAWYGFFSLLMAFQHSAEMVILCRFLVGIGLGVELVTIDTYLSEWVPTHLRNRAFAFSF 175
                 567788889***********987777777777899999999999999999*****************************99999999999******999 PP

       MFS_4 124 aGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllp...raalreasaa 180
                     l +   +l+ + l+ ++  +   W ++ +  av  l+++l+++   ++a+  a++ 
  EHT98375.1 176 FIQFLSVPTVALMSWWLMPQHILGLEGWRWVVIAGAVCSLIIWLVRKnlpESARWLAQQG 235
                 999999999999998887777777778888888888888888887762213333233333 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.057
       MFS_4   8 GRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslv 106
                 G + +   LPall  ++ s+++  l a    l Y +G+l+  +  s+ +++ ++  + l+tv+     al ++ +++++  fl   + A+      +  
  EHT98375.1 299 GFYGFGNWLPALLSGQGTSITHSLLYAFFITLAYPIGSLICGSFTSQLENKWQIVLSSLMTVVFGTLFALQTNPVLLVICGFLITFSNAWLTCSYHAYQ 397
                 55678889*********************************999999999999999999****9999************************99999999 PP

       MFS_4 107 lahaaaarrervgallfaGvGlGiavsgllvllllqlglsassl.Wlalavlsavllllv 165
                  +    a r+r  ++ ++   l  a s+ll+ ++lq+     ++  ++l++l ++l + v
  EHT98375.1 398 TEIFPTAIRARAVGFCYSFSRLSTAFSSLLIGVILQHTGTHGVIaFIVLSMLMVMLSVGV 457
                 9999999************************99988866555322555555555555544 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   4.0   1.7e-05     0.076     261     328 ..      82     149 ..      76     162 .. 0.81
   2 !    7.4  10.7    0.0003       1.4     201     332 ..     262     390 ..     170     401 .. 0.78
   3 !    6.9   2.9   0.00044         2      11      82 ..     384     455 ..     382     460 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.7e-05
       MFS_2 261 asvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgv 328
                  ++f+ +++++ + g+ l  p+a r+g++ t++++++ + ++++l+ + + + +++++ +lv +g+gv
  EHT98375.1  82 QAAFASATFLGLFMGASLLTPFADRFGRRLTFICALAWYGFFSLLMAFQHSAEMVILCRFLVGIGLGV 149
                 4567778899999**********************************997777666666655555554 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0003
       MFS_2 201 kkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisal...lgiplwqplakrlgkkntyllga 296
                 ++ ++++++k ++++ +    rnr ++++++ f+ a+  +g++n l ++      g+g+ ++ +ll ++  +l   +g+++   +++ l +k  ++l++
  EHT98375.1 262 SQPAAASDTKSRFRDIWAPRYRNRTLMLVIMNFFQAIGFYGFGNWLPALLS----GQGTSITHSLLYAFFITLaypIGSLICGSFTSQLENKWQIVLSS 356
                 455678999999*****************9999999999999999988876....455555544444333333237*********************** PP

       MFS_2 297 lltivllvlvlllqpsnlllflvllviagfgvgvaa 332
                 l+t+v+++l+ l   +n +l++++ +++ f+ + ++
  EHT98375.1 357 LMTVVFGTLFALQ--TNPVLLVICGFLITFSNAWLT 390
                 *******998776..999999999999999866555 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00044
       MFS_2  11 ilsvllatylliFytdvl..glsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsi 82 
                 ++++ l+  ++ + t+++   ++a +vg+ + ++rl  a++  ++G++ ++t t  G    +++ls ++ ++s+
  EHT98375.1 384 FSNAWLTCSYHAYQTEIFptAIRARAVGFCYSFSRLSTAFSSLLIGVILQHTGT-HGVIA-FIVLSMLMVMLSV 455
                 5667777788899999998899*******************************9.78766.9999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3468.00
//
Query:       EHT98376.1  [L=38]
Description: hypothetical protein CKS_4731 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 331.44
//
Query:       EHT98377.1  [L=333]
Description: putative methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-51  174.3  31.7    9.2e-51  172.1  20.0    2.4  2  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
      4e-08   33.5   0.3    2.1e-06   28.0   0.0    3.5  3  HAMP       HAMP domain
  ------ inclusion threshold ------
      0.015   15.4   1.7      0.015   15.4   1.7    2.1  3  Mod_r      Modifier of rudimentary (Mod(r)) protein
      0.071   12.8   0.1       0.16   11.6   0.1    1.5  1  DUF4874    Domain of unknown function (DUF4874)
      0.078   13.2  19.8       0.54   10.5  12.1    2.6  2  I_LWEQ     I/LWEQ domain
        1.5    8.9   4.6        7.5    6.6   0.0    2.8  3  LOH1CR12   Tumour suppressor protein
        1.8    8.9  13.3        1.6    9.0   0.3    4.0  4  WXG100     Proteins of 100 residues with WXG
        3.1    8.5   6.9        1.6    9.4   1.0    2.8  2  DUF2203    Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   3.7    0.0011       2.5      90     168 ..      94     158 ..      70     172 .. 0.48
   2 !  172.1  20.0   4.1e-54   9.2e-51       3     172 .]     175     330 ..     173     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
                 HHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  90 eiealiieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveev 168
                 ei++l++     +++  ++l+           ++ + ++a + ++ a +e+a+   ++a+ +e+q+a+++e++ ++e++
  EHT98377.1  94 EIQQLMT----SMESMRTALTG----------IITRVRQATQAVSFASQEIASGNVDLASRTEQQAAALTETAASMEQL 158
                 3333332....22222222222..........23333333333344444444444455555555555555555555443 PP

  == domain 2  score: 172.1 bits;  conditional E-value: 4.1e-54
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
   MCPsignal   3 laeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqke 101
                 la+ea ++Ae+g+++ ++v+  m +i++ssk+i+di++Vi++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsa aakeie li      
  EHT98377.1 175 LASEAVKNAESGEHVSQQVIVSMSKINESSKKIEDITNVINGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAVAAKEIEGLI------ 267
                 6899*****************************************************************************************...... PP

                 ........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 102 indsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          e++  + +gs++v++tgea++ i ++v++v+ l++ i++as+eq ++i+++ +av+e+++vt
  EHT98377.1 268 --------AESVATIRVGSDQVSQTGEAMNAIIASVGRVNVLMDHISTASNEQHHGISQIEKAVTEMDSVT 330
                 ........899999******************************************************996 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   9.4e-10   2.1e-06       1      52 [.      57     110 ..      57     111 .. 0.93
   2 ?    1.0   0.2      0.25   5.7e+02      16      28 ..     126     140 ..     112     169 .. 0.69
   3 ?   -1.7   0.0       1.7   3.8e+03       3      13 ..     288     298 ..     267     308 .. 0.61

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 9.4e-10
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.T.SSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpv.s.grDEiGeLarafNaMldrLr 52 
                 ++ r+il PL   +++  +iaaG ld+++pv + ++ Ei +L  +++ M+++L 
  EHT98377.1  57 FVRRYILSPLDHAKAHCSQIAAGILDKPVPVnTgSKSEIQQLMTSMESMRTALT 110
                 689********************99999888767*****************995 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
                 HHHHHTTT..BTSST CS
        HAMP  16 aarriaaG..dldtr 28 
                 a ++ia+G  dl +r
  EHT98377.1 126 ASQEIASGnvDLASR 140
                 456777785555555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.7
                 HHTTHHHHHHH CS
        HAMP   3 arrilrPLrrL 13 
                 +++i++++ r+
  EHT98377.1 288 MNAIIASVGRV 298
                 34455555555 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.1     7e+03      31      49 ..       7      25 ..       5      32 .. 0.66
   2 ?   15.4   1.7   6.9e-06     0.015       4     115 ..      91     208 ..      88     217 .. 0.83
   3 ?   -2.2   0.0       1.8     4e+03      28      36 ..     298     306 ..     251     329 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.1
       Mod_r 31 lkeekeellaeneslaekn 49
                ++  ++++la+ e++a+k 
  EHT98377.1  7 YEIVLDKVLAQHEAFAKKL 25
                5556777788888887764 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.9e-06
       Mod_r   4 SkeeLqelledeeklealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldell........qkfsp 93 
                 Sk+e+q+l+++ e ++  ++ +  +   ++++ + +  + +++a+ n +l  + e++ + l+e+  ++++l +++++ + +  e++        +  s 
  EHT98377.1  91 SKSEIQQLMTSMESMRTALTGIiTR---VRQATQAVSFASQEIASGNVDLASRTEQQAAALTETAASMEQLGATVKQNTDNVFEACrlaseavkNAESG 186
                 99***********999999766455...55555555555888999999999999999999999999999999999999999988887777777666677 PP

       Mod_r  94 dallarLqtavaeaeeeSeala 115
                 +++ +++ +++++++e S++++
  EHT98377.1 187 EHVSQQVIVSMSKINESSKKIE 208
                 8899999999999999998887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
       Mod_r  28 vkqlkeeke 36 
                 v+ l ++ +
  EHT98377.1 298 VNVLMDHIS 306
                 222222222 PP

>> DUF4874  Domain of unknown function (DUF4874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.3e-05      0.16      47     110 ..      91     170 ..      88     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
     DUF4874  47 seealdklekiletlrkagkkvilRfaYdte................gkateeedasleqilrHieqlkpileenkdvIa 110
                 s++++++l + +e +r+a + +i R+   t+                 ++te++ a l+ + + +eql++++++n+d+++
  EHT98377.1  91 SKSEIQQLMTSMESMRTALTGIITRVRQATQavsfasqeiasgnvdlASRTEQQAAALTETAASMEQLGATVKQNTDNVF 170
                 678999*********************99999**************999****************************986 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  12.1   0.00024      0.54      22     141 ..     102     234 ..      92     238 .. 0.71
   2 ?    5.9   2.3    0.0064        14      42     102 ..     256     315 ..     225     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
      I_LWEQ  22 anlLveaadavvqgk.akeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkeakekqeeee.....s.....eeeel 109
                 ++++ +a  ++++   ++ + +  a++e+a+    L   ++ +a +  ++ + +e+ ++ Vk+ t+++ +a++ a+e+ +++e     s     + +++
  EHT98377.1 102 MESMRTALTGIITRVrQATQAVSFASQEIASGNVDLASRTEQQAAALTETAASMEQLGATVKQNTDNVFEACRLASEAVKNAEsgehvSqqvivSMSKI 200
                 55555666666555436667778899************************************************9999888765544313444422233 PP

      I_LWEQ 110 d..isklslvqakrqemeaqvkilklekeLeear 141
                 +   +k +  +   + +  q +il+l+ + e+ar
  EHT98377.1 201 NesSKKIEDITNVINGIAFQTNILALNAAVEAAR 234
                 3113333444444555666777777777777777 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0064
      I_LWEQ  42 LivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkeakekqeee 102
                   vaake+   +a  v+  rv +d+ s++ ++++a +++V + ++ l+ ++ +a+++q   
  EHT98377.1 256 SAVAAKEIEGLIAESVATIRVGSDQVSQTGEAMNAIIASVGR-VNVLMDHISTASNEQHHG 315
                 569********************************9999976.466777777777665553 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.48   1.1e+03      52     113 ..      96     158 ..      91     168 .. 0.49
   2 ?    1.6   2.3      0.12   2.7e+02      31     106 ..     136     217 ..     107     234 .. 0.59
   3 ?    6.6   0.0    0.0034       7.5      73     118 ..     258     303 ..     220     307 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.48
    LOH1CR12  52 aklverikevdakiitllaelrekqkqyasyaea..lskvnelsdqlsriqiiledivpllEtl 113
                 ++l+  + ++ + ++ +++ +r+  +   s+a +   s+  +l +   +    l ++ +++E+l
  EHT98377.1  96 QQLMTSMESMRTALTGIITRVRQATQA-VSFASQeiASGNVDLASRTEQQAAALTETAASMEQL 158
                 455555555555555555555544332.333332112333344444444455555555555555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
    LOH1CR12  31 rlctRlqeHlavcAkavAadqaklverikevdakii...tllaelrekqkq....yasyaealskvnelsdqlsriqiiledi 106
                  l++R  +  a   ++ Aa  ++l +++k+   ++    +l +e +++ +      ++ + ++sk+ne s+++  i  +++ i
  EHT98377.1 136 DLASRTEQQAAAL-TETAASMEQLGATVKQNTDNVFeacRLASEAVKNAESgehvSQQVIVSMSKINESSKKIEDITNVINGI 217
                 5666665544333.344555666777777666555411134444444333311002344566788888888888888888765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0034
    LOH1CR12  73 rekqkqyasyaealskvnelsdqlsriqiiledivpllEtlnelLd 118
                 ++ ++     ae+++ +++ sdq+s+    ++ i++++ ++n l+d
  EHT98377.1 258 VAAKEIEGLIAESVATIRVGSDQVSQTGEAMNAIIASVGRVNVLMD 303
                 455555556789999***************************9987 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3   0.00073       1.6      50      81 ..      92     123 ..      88     129 .. 0.90
   2 ?    3.8   0.5     0.029        66       8      37 ..     140     169 ..     135     173 .. 0.79
   3 ?   -2.9   0.0       3.8   8.6e+03      16      26 ..     200     210 ..     189     218 .. 0.50
   4 ?    3.2   0.6     0.047   1.1e+02       4      85 ..     244     327 ..     241     328 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  50 qaefeewkqaaqklvdaLeeisealkqaanaf 81 
                 ++e+++++ +++ + +aL++i   ++qa++a+
  EHT98377.1  92 KSEIQQLMTSMESMRTALTGIITRVRQATQAV 123
                 6899************************9975 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      WXG100   8 elrqaaarfqkqaeeledelqrlkaevdal 37 
                 + +q aa++ ++a+++e++ +++k+  d++
  EHT98377.1 140 RTEQQAAALTETAASMEQLGATVKQNTDNV 169
                 567888888888888888888888888877 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.8
                 HHHHHHHHHHH CS
      WXG100  16 fqkqaeelede 26 
                 ++++++++ed+
  EHT98377.1 200 INESSKKIEDI 210
                 33333333333 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.047
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCT..HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   4 vdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWs..GaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85 
                 v + e+r  a+r + +a+e+e+++++  a++   +++ s  G+a +a  a   +++  ++ + +a +e    + q+ +a+++ D
  EHT98377.1 244 VVAGEVRNLAQRSAVAAKEIEGLIAESVATIRVGSDQVSqtGEAMNAIIASVGRVNVLMDHISTASNEQHHGISQIEKAVTEMD 327
                 556788888999999999999888888888877755444457777777777778888888888888888888888777777766 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   0.00073       1.6       7      78 ..      94     164 ..      91     171 .. 0.76
   2 ?    1.3   0.6      0.24   5.3e+02      48      48 ..     242     242 ..     165     330 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
     DUF2203   7 eAnalLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGvevkd 78 
                 e ++l++ ++++ ++l    ++++++ ++++ a++e + s+   l+++ e+ +a + e+ + +e+lG+ vk+
  EHT98377.1  94 EIQQLMTSMESMRTALTGIITRVRQATQAVSFASQEIA-SGNVDLASRTEQQAAALTETAASMEQLGATVKQ 164
                 45566666666666666666777777777777776654.4599999************************97 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
     DUF2203  48 a 48 
                 +
  EHT98377.1 242 F 242
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2117  (0.118077); expected 358.6 (0.02)
Passed bias filter:                      936  (0.0522059); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2547.45
//
Query:       EHT98378.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98378.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98378.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98378.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98378.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98378.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98378.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98378.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98378.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98378.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98378.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98378.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT98378.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98378.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT98378.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98378.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT98378.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98378.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98378.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98378.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT98378.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98378.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98378.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98378.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98378.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98378.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98378.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98378.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98378.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98378.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98378.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT98378.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT98378.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT98378.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT98378.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98378.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98378.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 3645.72
//
Query:       EHT98379.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98379.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 929.63
//
Query:       EHT98380.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98380.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98380.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98380.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98380.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 791.73
//
Query:       EHT98381.1  [L=777]
Description: ferrous iron uptake protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-56  189.3   0.0    5.3e-56  188.5   0.0    1.4  1  FeoB_N           Ferrous iron transport protein B
    3.4e-50  169.0   9.1    1.6e-34  118.5   0.6    3.0  2  Gate             Nucleoside recognition
    3.9e-22   77.7   0.4    3.9e-22   77.7   0.4    2.6  2  FeoB_C           Ferrous iron transport protein B C terminus
      2e-17   63.3   0.0    3.6e-17   62.5   0.0    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
    5.3e-10   39.7   0.0    1.5e-09   38.3   0.0    1.8  1  FeoB_Cyto        FeoB cytosolic helical domain
    2.5e-05   23.8   0.0    4.1e-05   23.1   0.0    1.2  1  SRPRB            Signal recognition particle receptor beta su
  ------ inclusion threshold ------
      0.017   15.0   0.1        3.8    7.4   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
      0.068   12.7   0.1        1.5    8.4   0.1    2.5  1  GTP_EFTU         Elongation factor Tu GTP binding domain
      0.071   13.2   0.0         11    6.0   0.0    2.2  2  Dynamin_N        Dynamin family


Domain annotation for each model (and alignments):
>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.0   2.7e-59   5.3e-56       3     156 .]       6     163 ..       4     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 2.7e-59
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS....SSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYsl....sayseeekvardflleeepdvvvnvvdatnlernLyL 97 
                 + l+Gnpn+Gkttlfn+ltga+q+vgNw+Gvtve+keg++ +++++v++vDlPG+ sl     + +++e++a+ +l e+++d+v+nvvd++nle +L+L
  EHT98381.1   6 LGLIGNPNTGKTTLFNQLTGARQRVGNWAGVTVERKEGQFFTAETDVRLVDLPGTRSLttlsADSAIDESIACGYLFEDHADLVINVVDSSNLESHLFL 104
                 679*******************************************************44433345789****************************** PP

                 HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N  98 tlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellkai 156
                 t qllelg+p+++alnm d a +++i id ++Ls++Lg+pvv+++++++egi +l++ai
  EHT98381.1 105 TFQLLELGMPCIVALNMQDIALSQNIIIDRAALSARLGCPVVTLTSTRGEGIASLKRAI 163
                 *******************************************************9986 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   2.4   1.3e-17   2.6e-14       3     109 ..     349     440 ..     347     443 .. 0.95
   2 !  118.5   0.6     8e-38   1.6e-34       2     111 ..     510     687 ..     509     688 .. 0.99

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.3e-17
        Gate   3 kagpiillasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcvat 101
                  ++p i l+ ++++fl++s++++r++++++ +++ lg  l++k++v+l++gf+   ++v++++ ++         + dtp+++l ++l+  +++ c+a+
  EHT98381.1 349 PILPQIGLMYLFLSFLEDSGYMARAAFVIDRLMQSLG--LPGKSFVPLIVGFG---CNVPSVMGTR---------TLDTPRERLLTVLIAPFMS-CGAR 432
                 678999*******************************..**************...*********9.........*****************98.**** PP

        Gate 102 lavivrel 109
                 la+++ ++
  EHT98381.1 433 LAIFAVFA 440
                 **998776 PP

  == domain 2  score: 118.5 bits;  conditional E-value: 8e-38
        Gate   2 lkagpiillasiliwflss............ssllgrigkllepvfaplg.qeldwkatvslltgfaakevvvgtlgtly................... 68 
                 ++ag +i+++s++i++ls+            +s+l+ ++k+++p ++p g ++++w+atv+l+tg++akevvvgtl++ly                   
  EHT98381.1 510 VRAGRVIIVVSMVIGLLSNfsfsgatvdhinDSALATVSKVVTPALRPVGvTSDNWQATVGLVTGIMAKEVVVGTLNSLYvgedvqsgafrpqdfslsg 608
                 79************************************************************************************************* PP

        Gate  69 ....................................tsalgellqgfdtpksalafllfvllytpcvatlavivrelgs 111
                                                     ++++g ++++f +  +a+++llfvlly+pcv+++++i+re+g+
  EHT98381.1 609 elgdalketgdslksafslralanpieankgdstinATQMGVMSAKFGNGFAAYSYLLFVLLYVPCVSVMGAIAREAGK 687
                 *****************************************************************************96 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.4     2e-25   3.9e-22       1      53 []     452     504 ..     452     504 .. 0.98
   2 ?   -2.4   0.2         2   3.9e+03       8      26 ..     516     533 ..     515     537 .. 0.64

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 2e-25
      FeoB_C   1 lfslYllgilvallvalllkktt.lkgepspfvmELPpYrlPslknvliktweR 53 
                 +fslY+lgi+va++++l+lk+ t l+ge+spf+mELP Y++P++k++li+tw+R
  EHT98381.1 452 VFSLYVLGIIVAIVTGLILKN-TlLRGEASPFLMELPVYHRPHVKSLLIQTWQR 504
                 79*******************.99****************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
      FeoB_C   8 gilvallvalllkkttlkg 26 
                  i+v ++++ll +   + g
  EHT98381.1 516 IIVVSMVIGLLSNFS-FSG 533
                 577777777776654.555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.8e-20   3.6e-17       2     113 ..       6     120 ..       5     121 .. 0.76

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.8e-20
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC.....SS.HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGl.....ie.gaseekglgkaflaleeadlillvvdaseeklkpld 94 
                  +++G+pN+GK+tL+n+ltg++ +v++++g+T + +eg++ + +++++lvD+pG      ++ ++  +++++  +l  + adl++ vvd+s + l+   
  EHT98381.1   6 LGLIGNPNTGKTTLFNQLTGARQRVGNWAGVTVERKEGQFFTAETDVRLVDLPGTrslttLSaDSAIDESIACGYLFEDHADLVINVVDSS-N-LESH- 101
                 589************************************99889**********53333222456666689999998888*********66.3.4333. PP

                 HHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  95 eeleelleeakkplilvln 113
                   l   l e + p+i++ln
  EHT98381.1 102 LFLTFQLLELGMPCIVALN 120
                 2222222334566666665 PP

>> FeoB_Cyto  FeoB cytosolic helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   7.4e-13   1.5e-09       1      90 [.     177     257 ..     177     258 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 7.4e-13
   FeoB_Cyto   1 YgeeiEkaiekleellkesnlkaklppRwlAlklLegDeelleelkedpelraeveearkeleaelgedledvIvdarykfiegilrevv 90 
                 Y++eiE+ai++l+ +++++   a+ ++RwlAl+lL gD + ++   +       v      +++  g d+ +++v++ry++i++++++v+
  EHT98381.1 177 YPREIETAIARLQTMMPAD--IARQKQRWLALQLLAGDINSQRICPT-------VVPQLPAIRQAAGGDPAMHVVNCRYQAINALCAAVC 257
                 9*****************9..*****************999999998.......55555566778899*******************998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.1e-08   4.1e-05       8     132 ..       8     132 ..       2     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.1e-08
                 EE-STTSSHHHHHHHHHHSS---B-...--SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHHH CS
       SRPRB   8 lvGlsdsGKTslftrLttdsvkktv...tSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyeil 103
                 l+G  ++GKT+lf++Lt    +      + +e +  + +  + ++ ++l+D+PG  +l +   ++ +++s + g +f  D +    +v +   l  ++ 
  EHT98381.1   8 LIGNPNTGKTTLFNQLTGARQRVGNwagVTVERKEGQFF--TAETDVRLVDLPGTRSLTTLSADSAIDESIACGYLFE-DHADLVINVVDSSNLESHLF 103
                 89***************8855443310133455555555..78899*************9999999999999999985.77777889999999999999 PP

                 HHHHHHTT---EEEEEE-TTSTT---HHH CS
       SRPRB 104 liteklkdavdiliACnKqelflakspkl 132
                 l  ++l+ +++ ++A n q+++l+++  +
  EHT98381.1 104 LTFQLLELGMPCIVALNMQDIALSQNIII 132
                 99999999999999999999999887555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0019       3.8     103     161 ..       7      60 ..       1      65 [. 0.64
   2 ?    5.2   0.0     0.009        18      43      99 ..     109     165 ..      85     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                  EEECSTTSSHHHHHHHHCTT-----S-...-------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelelktge...vseklgrGkhTTtavellelaegglliDtPGf 161
                   l+G+   GK+tL n+l++  ++++g+   v  + ++G+        +  +++  l+D PG 
   EHT98381.1   7 GLIGNPNTGKTTLFNQLTGA-RQRVGNwagVTVERKEGQF-------FTAETDVRLVDLPGT 60 
                  58999999**********98.6777651114445555544.......444444455555555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.009
                  HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                   e g++ +++ln  D++ +++ + + ++  ++lg++v+++ ++++eg+++lk++++d
   EHT98381.1 109 LELGMPCIVALNMQDIALSQNIIIDRAALSARLGCPVVTLTSTRGEGIASLKRAIDD 165
                  46678999*********9999999999999*********************998875 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00073       1.5       3      32 ..       3      32 ..       1     165 [. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00073
                EEEEEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU  3 irnigiighvDhGKtTLtdrLlyktgaisk 32
                ++++g+ig  ++GKtTL  +L+ + +++ +
  EHT98381.1  3 TLTLGLIGNPNTGKTTLFNQLTGARQRVGN 32
                578899*************99966665554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        24       2      22 ..       7      27 ..       6      37 .. 0.89
   2 ?    6.0   0.0    0.0055        11     100     140 ..      49      97 ..      43     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
                EEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlged 22
                 ++G+ + GK+++ n+L+g++
  EHT98381.1  7 GLIGNPNTGKTTLFNQLTGAR 27
                589***************986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0055
                 S-SEEEEE---B-SSSGTTS......HHHHHHH..STTEEEEEEEETTS CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq......elvkeyi..kkadiilavtsanh 140
                 + ++ lvDlPG  s  +         +++  y+  ++ad+++ v+++++
  EHT98381.1  49 ETDVRLVDLPGTRSLTTLSAdsaideSIACGYLfeDHADLVINVVDSSN 97 
                 6799*********977766667888888888888778888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5432.44
//
Query:       EHT98382.1  [L=74]
Description: ferrous iron transport protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-08   32.4   0.0    8.8e-08   32.3   0.0    1.0  1  FeoA      FeoA domain


Domain annotation for each model (and alignments):
>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   4.9e-12   8.8e-08       9      71 ..       6      69 ..       2      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.9e-12
                T-EEEEEEE-T.T.SSHHHHHHHHT--TT-EEEEEEE-TTS-SEEEEETTEEEEE-HHHHTTEE CS
        FeoA  9 Gergeiarisd.edpellrrLremGlvpGarievvarapfggplvvrvgdtrvaLgreeAqaIl 71
                 +++++++ +   dp+ +++L+ mG+ pG+ i +++ ap+g+p+ +r +   +a++++  +++l
  EHT98382.1  6 HTSYRVRGYQPsVDPAWRQKLLTMGVLPGTLIDIIRTAPLGDPVHIRTRRLSLAVRQRDLASVL 69
                56778888877889***********************************999**9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 568.11
//
Query:       EHT98383.1  [L=553]
Description: methyl-accepting chemotaxis protein I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-51  173.4  37.0      2e-50  171.0  22.9    3.1  3  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    2.5e-40  138.3   9.2    2.5e-40  138.3   9.2    3.6  4  TarH           Tar ligand binding domain homologue
    9.9e-07   29.1   4.1    3.2e-05   24.2   0.4    3.8  3  HAMP           HAMP domain
  ------ inclusion threshold ------
        2.5    9.0   4.3        1.8    9.4   0.2    2.9  3  ATP-synt_G     Mitochondrial ATP synthase g subunit
        3.5    7.5  15.1       0.22   11.3   0.3    4.8  5  Synaptobrevin  Synaptobrevin
        8.7    6.4  16.1        1.1    9.3   0.9    4.5  4  DUF1664        Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   2.5   0.00013       0.4      97     170 ..     240     314 ..     224     316 .. 0.76
   2 !  171.0  22.9   6.7e-54     2e-50       2     172 .]     328     484 ..     327     484 .. 0.98
   3 ?   -3.2   0.1       2.2   6.6e+03      22      37 ..     495     510 ..     486     523 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                 ..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  97 eiqkei.ndsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 ei  ++ n++ + l++ ++  +  + ++++  +a ++i + +aev++   +++a +e+q+a++ee++ ++e++++
  EHT98383.1 240 EIASDShNETGRLLSQLEEMRSALVVTIRSVDDATQSIFTGAAEVSAGSIDLSARTEQQAAALEETAASMEQLTS 314
                 4444441444445555555555566788889999999*********************************99876 PP

  == domain 2  score: 171.0 bits;  conditional E-value: 6.7e-54
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                  +a++a   A++gg+ va+v++++e+i++ssk+i+ ii +id+ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA rsa aa+ei++li     
  EHT98383.1 328 AMANDAAVMASQGGQIVAKVISNIEQISESSKQIASIIGIIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAGRSASAAQEIRTLI----- 421
                 58999*****************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          e+++qrv++gs+ ++e+g+++ +iv++v++v++l+ eia+as+eq+++ie+v++av+e++ vt
  EHT98383.1 422 ---------EQSTQRVNSGSTHASEAGDVMGSIVHSVNSVTQLMAEIASASAEQTRGIEQVTKAVSEMDGVT 484
                 .........9***********************************************************986 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHH CS
   MCPsignal  22 vkqmeeieksskeisd 37 
                  ++  ++e+++ ++ +
  EHT98383.1 495 ASAAASLEDQATQLRQ 510
                 2222222222222222 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   9.2   8.5e-44   2.5e-40       1     168 [.       1     172 [.       1     179 [. 0.98
   2 ?   -4.6   1.4         6   1.8e+04      12      30 ..     196     214 ..     193     217 .. 0.68
   3 ?   -1.9   3.2      0.92   2.7e+03      47      83 ..     296     333 ..     255     360 .. 0.58
   4 ?   -1.4   0.0      0.66     2e+03     131     168 ..     379     416 ..     372     423 .. 0.79

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 8.5e-44
                 XXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS.....SHHHHHHHHHH CS
        TarH   1 mlkrisIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaeda.....kellaraeesl 94 
                 m+k+++I t++++vl+l+++Ll+++g l++s++s++  ++ ++++    qq++L+++ ++l ++R+t++r++i++l+++ ++a     ++ll++a++s 
  EHT98383.1   1 MFKNLKITTGIIAVLFLFSALLMLTGSLFYSSVSQAGLNFSHTEQLT-LQQQQLSDSVQTLIKTRVTVSRVAIRFLKNQKDPAslasiATLLDTAKQSA 98 
                 9******************************************9999.9999*********************************************** PP

                 HHHHHHHHHHHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH  95 aqseeawkaYlalprtaeeeealaaelkakykalqdglapliaaleagnleaffdlptqkiqplfealyaayea 168
                 ++++e++ aY+a+p  +++ ++l+++++++y +++d++ + +++l+++n++a+ +l +q++q++ +++y+a+++
  EHT98383.1  99 EKADEYFSAYKAAPPLPGQHAELTQNVQTAYSKMHDTMLASVEFLRNNNYQAYGNLDAQEAQDQLDKAYQAWRS 172
                 ************************************************************************98 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 6
                 XXXXXXXXXXXXXXXSSSS CS
        TarH  12 llvlallgvLllvsgglgl 30 
                 ll++a++++ +++s + gl
  EHT98383.1 196 LLIIAVIALVTVASVWAGL 214
                 4677777777777777665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.92
                 H.HHHHHHHHHHHHH..HHHHHHHHHHHHHHTTTSSSSS CS
        TarH  47 rlqqqaaLaearvsl..lqaRltLnragiaaladeaeda 83 
                 + qq+aaL e+ +s+  l++ ++Ln  +++ + + a+da
  EHT98383.1 296 E-QQAAALEETAASMeqLTSTVKLNAENAQQATAMANDA 333
                 3.4555555443333114455555554444433333333 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.66
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayea 168
                 +l ++++a +ag++ + f++++ ++++l     +a+++
  EHT98383.1 379 ALNAAVEAARAGEQGRGFAVVAGEVRSLAGRSASAAQE 416
                 78899999999999999999999988887777777766 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.4   1.1e-08   3.2e-05       5      51 ..     217     263 ..     213     264 .. 0.94
   2 ?   -2.0   0.1       1.7     5e+03      17      28 ..     281     294 ..     279     315 .. 0.73
   3 ?    3.6   0.0     0.029        86       3      22 ..     442     461 ..     441     484 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.1e-08
                 TTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                  +l+PL   ++ +r+i+aGdl+  +  ++ +E G+L   +++M+ +L
  EHT98383.1 217 LLLKPLTLATDYMRAISAGDLTREIASDSHNETGRLLSQLEEMRSAL 263
                 689*****************************************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                 HHHHTTT..BTSST CS
        HAMP  17 arriaaG..dldtr 28 
                 a++++aG  dl++r
  EHT98383.1 281 AAEVSAGsiDLSAR 294
                 67788887777776 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.029
                 HHTTHHHHHHHHHHHHHHTT CS
        HAMP   3 arrilrPLrrLaraarriaa 22 
                 +++i+++++ +++ +++ia+
  EHT98383.1 442 MGSIVHSVNSVTQLMAEIAS 461
                 789***************96 PP

>> ATP-synt_G  Mitochondrial ATP synthase g subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         6   1.8e+04       3      18 ..      57      72 ..      47      78 .. 0.72
   2 ?    9.4   0.2    0.0006       1.8       9      75 ..      89     152 ..      82     178 .. 0.80
   3 ?   -0.9   0.1         1     3e+03      35      62 ..     302     329 ..     274     367 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6
  ATP-synt_G  3 veslvpkavyyskvgl 18
                v++l+++ v++s+v++
  EHT98383.1 57 VQTLIKTRVTVSRVAI 72
                6677777777777765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0006
  ATP-synt_G   9 kavyyskvglelskqvakkeklapPtvaefqslykqllktalaspskpqellerlknlkkeeallag 75 
                 + +  +k+ +e++ +++   k apP + +  +l ++++ +  +      ++l++++ l ++++ ++g
  EHT98383.1  89 TLLDTAKQSAEKADEYFSAYKAAPPLPGQHAELTQNVQTAYSK-MH--DTMLASVEFLRNNNYQAYG 152
                 567889******************************9999444.43..4667776655555555554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1
  ATP-synt_G  35 vaefqslykqllktalaspskpqeller 62 
                 ++e  + ++ql++t++ ++++ q++ + 
  EHT98383.1 302 LEETAASMEQLTSTVKLNAENAQQATAM 329
                 4444444444444433333333322222 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.24   7.1e+02      63      84 ..       2      23 ..       1      26 [. 0.70
   2 ?    2.0   0.0     0.058   1.7e+02      63      82 ..     189     208 ..     154     213 .. 0.71
   3 ?   -1.0   0.5      0.51   1.5e+03      31      65 ..     297     331 ..     288     351 .. 0.68
   4 ?   -0.6   0.1      0.38   1.1e+03      14      35 ..     342     363 ..     331     367 .. 0.78
   5 ?   11.3   0.3   7.3e-05      0.22       3      52 ..     468     517 ..     466     521 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.24
                   HHTXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin 63 wknmkliiililvvlililiii 84
                   +kn+k++  +i+v++++  +++
     EHT98383.1  2 FKNLKITTGIIAVLFLFSALLM 23
                   6888888888888877655544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.058
                    HHTXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  63 wknmkliiililvvlilili 82 
                      nm +++++i+v++++ + 
     EHT98383.1 189 YTNMLWTLLIIAVIALVTVA 208
                    45676666666665555444 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.51
                    CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Synaptobrevin  31 ekldeLvdktenLqssaqqFkkqarklkrkmwwkn 65 
                    ++   L++ +  +++ +++ k +a + +++  + n
     EHT98383.1 297 QQAAALEETAASMEQLTSTVKLNAENAQQATAMAN 331
                    55566677777777777777777766666665555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.38
                    CCCCHHCCHHHHCHCCCCCHHH CS
  Synaptobrevin  14 evkdimkeNidkvlergeklde 35 
                    +++ ++++Ni+++ e+ +++ +
     EHT98383.1 342 QIVAKVISNIEQISESSKQIAS 363
                    6677788899999888888765 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 7.3e-05
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHH CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkk 52 
                    + ++++ + v+e  +++++N   v e+     +L+d++ +L++s + F++
     EHT98383.1 468 RGIEQVTKAVSEMDGVTQQNAALVEESASAAASLEDQATQLRQSVSVFNT 517
                    6689***************************************9999975 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         1   3.1e+03      33      46 ..      47      60 ..      20      94 .. 0.60
   2 ?   -1.5   0.0      0.82   2.4e+03      47      70 ..     160     183 ..     155     192 .. 0.84
   3 ?    1.2   4.0      0.12   3.5e+02      33      98 ..     264     325 ..     257     374 .. 0.41
   4 ?    9.3   0.9   0.00036       1.1      48     113 ..     450     515 ..     439     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
     DUF1664 33 fvTkrslsdavesv 46
                   ++ lsd v+++
  EHT98383.1 47 TLQQQQLSDSVQTL 60
                22233344444333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.82
     DUF1664  47 skqleqvseslaatkrhLssridr 70 
                   ql++ +++ +++  +L+++i+ 
  EHT98383.1 160 QDQLDKAYQAWRSANYQLMKEIAA 183
                 579999999999999999999975 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.12
     DUF1664  33 fvTkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                  vT rs  da +s+ +   +vs+       +Ls+r ++  + l+e+++  +++++ v+   e+ ++
  EHT98383.1 264 VVTIRSVDDATQSIFTGAAEVSAG----SIDLSARTEQQAAALEETAASMEQLTSTVKLNAENAQQ 325
                 566666666665555554444432....22233333333333333333333322222222222222 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00036
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegl 113
                 ++++q+++++a++  + ++ i++v k + e+  ++++ ++ v+e  +  ++++++ +++++ v+ +
  EHT98383.1 450 NSVTQLMAEIASASAEQTRGIEQVTKAVSEMDGVTQQNAALVEESASAAASLEDQATQLRQSVSVF 515
                 5789999****************************************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1888  (0.105304); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 4011.21
//
Query:       EHT98384.1  [L=108]
Description: hypothetical protein CKS_4745 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-08   33.5   0.0    5.3e-08   33.2   0.0    1.1  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     3e-12   5.3e-08       1      87 [.       1      76 [.       1      82 [. 0.94

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 3e-12
                EEEEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEE CS
        YCII  1 MlyvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlve 87
                Mly+++  ++ a+  er+++ a h ++l e+ k G +++aGp ++ +          gG++++ a d++++++ + +dPfv+ Glv 
  EHT98384.1  1 MLYIVTLSYRGAA-AEREKHSAGHKSWLVEHIKTGEVVLAGPLENQQ----------GGVVLFLASDEQAVRDRLTEDPFVALGLVD 76
                9999999999997.6********************************..........***************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 841.01
//
Query:       EHT98385.1  [L=153]
Description: FMN-dependent NADH-azoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-30  105.2   0.0    3.9e-30  105.1   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    7.4e-09   35.5   0.0    9.4e-09   35.2   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   4.3e-34   3.9e-30       2     140 ..       3     147 ..       2     153 .] 0.88

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 4.3e-34
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHC.....CHHHHTT.C.HHHHHHH.HHHHHCSSEEEEEEE-BT CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaa.....klayeek.p.adveseq.iekllaadaivlqfPlww 89 
                   ++L+i+a+  +++s +++l++ +v++l ++ p ++ t+rd+ a+ +  l+++ +a+     + +  e  +     s+  ++++la+d+iv+++P+++
    EHT98385.1   3 RLLHIDASIFQTSSVTRQLTADIVRKLLAKYPaAQATYRDVVAEEIRPLNAAIAAGfragnDDNVSEYiAeQHRLSDLlVAEFLASDVIVIGAPMYN 99 
                   78*********99*******************************999999999988776541233333544778899999***************** PP

                   TB--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTT.TSEEEEEEEESS-GGG CS
  Flavodoxin_2  90 fgvPailKgwiDrvltagfaf.yteeggegrgggLk.gkkalvivttGgpees 140
                   f+vPa+lK w+Dr+++ag++f yt++g  +  +gL+ g++++v++++Gg  ++
    EHT98385.1 100 FSVPAQLKSWLDRIAQAGKTFsYTAQG--P--VGLSgGRTVIVASARGGF-YH 147
                   ***************************..8..999999**********98.54 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0     1e-12   9.4e-09      64     121 ..      79     134 ..       3     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1e-12
                 HHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT-EEEEEEE-SST CS
     FMN_red  64 aellekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgKpvalvavgggr 121
                   l++   a+d+++i+ P Yn s++++lK+ lDr+   + +k ++  + ++v+ +ggr
  EHT98385.1  79 DLLVAEFLASDVIVIGAPMYNFSVPAQLKSWLDRIA--QAGKTFSYTAQGPVGLSGGR 134
                 67889999***************************7..78888998888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1298.85
//
Query:       EHT98386.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98386.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98386.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98386.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98386.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98386.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98386.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98386.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98386.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98386.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98386.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98386.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98386.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98386.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98386.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98386.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98386.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98386.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2245.47
//
Query:       EHT98387.1  [L=233]
Description: putative secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-18   66.7   5.2    5.3e-18   66.4   5.2    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
      1e-09   38.0   2.8    4.7e-08   32.6   0.3    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
    3.1e-08   33.6   0.0    4.1e-08   33.2   0.0    1.2  1  Abhydrolase_5  Alpha/beta hydrolase family
    2.2e-07   30.8   1.0     0.0048   16.6   0.1    3.1  3  Abhydrolase_1  alpha/beta hydrolase fold
     0.0054   16.6   1.4     0.0075   16.1   0.2    1.9  3  Ser_hydrolase  Serine hydrolase
  ------ inclusion threshold ------
      0.012   16.0   0.1      0.078   13.4   0.0    2.2  2  DUF4350        Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   5.2   1.8e-21   5.3e-18       1     192 [.      35     220 ..      35     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.8e-21
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EE.EEES CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled.ladlaalldelaagggpvvlvGHSlGGalalaaaplalvvg.vlld 94 
                    ++l+HGa++++s+W+ a + +l ++g+hv a++ p         ++l+d + + +a++++     gpv lvGHS+GG++++ a+   +v+g v+l+
     EHT98387.1  35 IVLVHGAFTDGSGWR-AVISRLQHKGYHVTAVQNP-----L---TSLQDnVKATEAVIARQ---QGPVLLVGHSWGGVVVADAGNDSRVRGmVFLS 118
                    8*************4.5889999999********9.....3...44444367778888888...59****************99999*9******* PP

                    -..----TTT..S----TTHHHHHHTT-C....CCCHCCHS-HS...CCCCHHHCCCCHCHCCCGHHHHCCHHC..HTTCCHHTT-TTGCEEECTT CS
  Abhydrolase_6  95 ppptalpagl..laaalelllallallrl....lawlsreplpr...lfladedadaawrarlarlaallaglg..llpaaawadlpvpllvlgge 179
                    +    +p+++  +a +l+ l+a+++  r+      wl     ++   ++la++ +da++r+  a  ++ +a+ +    ++aaw+  p+++l+  ++
     EHT98387.1 119 A---LVPDSNesAAGLLQRLHAPMTEMRPdkhgMIWLD---NAQqfgEMLAGDVPDARVRELAAVQQPVAASAFtdKVTRAAWKSKPTWYLL-TTQ 207
                    *...9999998877777777777775555455566664...3331234444444568888888888888887773355799*********66.9** PP

                    -CHHHHCHHCCCH CS
  Abhydrolase_6 180 Dplvprllerlla 192
                    D+++p+ ++   a
     EHT98387.1 208 DRALPPRVQSDIA 220
                    **99877664433 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.2     0.002       5.8       5      37 ..      33      65 ..      29      68 .. 0.90
   2 !   32.6   0.3   1.6e-11   4.7e-08      59     224 ..      72     230 ..      65     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.002
  Hydrolase_4  5 avvvlvHGlaehsgryaelaeaLaaqGfavyal 37
                 + +vlvHG     +    ++ +L+++G++v a+
   EHT98387.1 33 KNIVLVHGAFTDGSGWRAVISRLQHKGYHVTAV 65
                 689***************************986 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 1.6e-11
  Hydrolase_4  59 vdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdp...e 153
                  ++D  +++e+v +++ + p+ l+GhS+GG++++ ++ + +   +g+++ ++++   ++  a  ll+ l+  + ++ p+      + + +l + +   e
   EHT98387.1  72 LQDNVKATEAVIARQ-QGPVLLVGHSWGGVVVADAGNDSRV--RGMVFLSALVPDSNES-AAGLLQRLHAPMTEMRPDK-----HGMIWLDNAQqfgE 160
                  556666666666555.558****************998877..*********9766543.4444444444444444444.....44555555550005 PP

  Hydrolase_4 154 vvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktl 224
                  ++a    d  v++   v+  + +   ++++++ a+k   P++ l  ++D+  +p+ + ++++++g++ ++l
   EHT98387.1 161 MLAGDVPDARVRELAAVQQPVAASAFTDKVTRAAWKS-KPTWYLLTTQDRALPPRVQSDIAAHIGARVQRL 230
                  5555566788899999999999999999999999987.8*************************9987665 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.4e-11   4.1e-08       2      95 ..      35     126 ..      34     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.4e-11
  Abhydrolase_5   2 lifYpGakveaesYaelaeklaksGyevvlvklPlnlavlgknkaeeiikeapklekfvvgGhslGGvvasrfaaeeekiegvvflasY.Pekde 95 
                    +++  Ga+ +   +  + ++l ++Gy+v  v+ Pl     +  ++e +i  ++     ++ Ghs GGvv++  a +++++ g+vfl++  P+ +e
     EHT98387.1  35 IVLVHGAFTDGSGWRAVISRLQHKGYHVTAVQNPLTSLQDNVKATEAVIARQQ--GPVLLVGHSWGGVVVAD-AGNDSRVRGMVFLSALvPDSNE 126
                    78999*****************************9854444444555555443..458899********998.5677899******885265333 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0036        11       3      34 ..      35      64 ..      33      68 .. 0.89
   2 !   16.6   0.1   1.6e-06    0.0048      72     111 ..      87     125 ..      84     145 .. 0.80
   3 !    6.0   0.0    0.0028       8.4     212     242 ..     197     227 ..     156     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0036
                   EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEE CS
  Abhydrolase_1  3 lvilhGlpgssdvwaerglapaLakdgfdvil 34
                   +v++hG    +  w++  +++ L+++g++v +
     EHT98387.1 35 IVLVHGAFTDGSGWRA--VISRLQHKGYHVTA 64
                   8999999999999***..**********9976 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.6e-06
                    TSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE.CSSCC CS
  Abhydrolase_1  72 ddkltlvGhSmGGmialayaaeyperVkalvllga.idpaa 111
                    ++++ lvGhS+GG +++ +    ++rV+++v+l+a +++++
     EHT98387.1  87 QGPVLLVGHSWGGVVVADAGN--DSRVRGMVFLSAlVPDSN 125
                    56777***********99998..6***********733333 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0028
                    S.EEEEEEETTCSSSCHHHHHHHHHCHTSEEE CS
  Abhydrolase_1 212 a.ptlvisgtsDplvppkaledlaqllpkkrl 242
                    + pt ++ +t+D++ pp++++d+a+++   r+
     EHT98387.1 197 SkPTWYLLTTQDRALPPRVQSDIAAHIGA-RV 227
                    34999********************9987.44 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   3.1e+03      75      90 ..      26      41 ..      17      51 .. 0.74
   2 !   16.1   0.2   2.5e-06    0.0075      15      95 ..      48     125 ..      35     147 .. 0.75
   3 ?   -2.0   0.0      0.94   2.8e+03     122     146 ..     205     229 ..     174     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                   HTTSSSEEEEEEET-- CS
  Ser_hydrolase 75 lqlakkvagalLVapa 90
                   l++++ v+ ++LV +a
     EHT98387.1 26 LAAQATVKNIVLVHGA 41
                   6788999999999766 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.5e-06
                    CHHHHHHHHCCTEEEEEC--TS--HHHHHHHHHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGGS. CS
  Ser_hydrolase  15 WqsrwekklpaarrveqadwlkPdledWvaaleaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadveee 95 
                    W + +++   +   v+  +     l+d v+a ea +++++++v+lv HS g ++v+ a      ++v+g+++ +   ++++
     EHT98387.1  48 WRAVISRLQHKGYHVTAVQNPLTSLQDNVKATEAVIARQQGPVLLVGHSWGGVVVADAG---NDSRVRGMVFLSALVPDSN 125
                    7777766666667777777777889999**************************99977...7888999888877665433 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.94
                    ETTBTTC-HHHHHHHHHHCT-EEEE CS
  Ser_hydrolase 122 SenDpyvsfeeaeelaeawgaelvd 146
                     + D +++     ++a+++ga++  
     EHT98387.1 205 TTQDRALPPRVQSDIAAHIGARVQR 229
                    5567777777777888888887765 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-05     0.078       3      34 ..      44      86 ..      43     108 .. 0.79
   2 ?   -0.0   0.0      0.41   1.2e+03      25      51 ..     187     218 ..     170     229 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
     DUF4350  3 spnGtralaelLeaqGvevrrvrkpfdaleg...........e 34
                +  G+ra+ + L  +G++v++v++p++ l++            
  EHT98387.1 44 DGSGWRAVISRLQHKGYHVTAVQNPLTSLQDnvkateaviarQ 86
                5689***********************9987665544444443 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.41
     DUF4350  25 rkpfd.al.egedgtllvvapdlrlte...ee 51 
                 ++  + a   ++++ +l++++d  l++    +
  EHT98387.1 187 TDKVTrAAwKSKPTWYLLTTQDRALPPrvqSD 218
                 44444222246889999999998888865544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1782.69
//
Query:       EHT98388.1  [L=334]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-23   81.3   0.1    8.7e-23   80.4   0.1    1.4  1  HTH_18     Helix-turn-helix domain
    3.2e-15   56.3   0.0    6.6e-15   55.3   0.0    1.5  2  DJ-1_PfpI  DJ-1/PfpI family
    1.4e-13   50.6   0.0    2.6e-06   27.4   0.0    2.4  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
    0.00044   20.1   0.0      0.001   19.0   0.0    1.5  1  HTH_11     HTH domain
      0.008   15.7   0.0       0.82    9.3   0.0    2.4  2  HTH_24     Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   2.4e-26   8.7e-23       1      80 [.     245     323 ..     245     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.4e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la al+ s+rtL+r  k  +g +pk++++r+R+e A+ lL en+  s+ ++A+++G+sd s+F++af +++ +tP++yr+
  EHT98388.1 245 LASALHTSERTLHRKMKMLTGESPKAFITRVRIEGACLLL-ENPTVSIRKVAADCGYSDESSFRKAFNQVMAMTPARYRQ 323
                 799***********************************87.99***********************************96 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.8e-18   6.6e-15      20     163 ..      37     185 ..      34     187 .. 0.81
   2 ?   -2.9   0.0       1.5   5.3e+03     103     127 ..     279     303 ..     247     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.8e-18
                 HHHHHHTTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHH.HHHHHTSH....HHHHHHHHHHHTT-EEEEETTTHHHHHHTTTT CS
   DJ-1_PfpI  20 vdvlkragikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGrag.perlrene....kvvelvkefaekgklvaaICagpqlLaaagvl 113
                 ++ l ra ++ ++vs d+++v+  +G  + vda +++++a+    +vl+GG+a   +r+  ++    ++++++k+++ +g +v+a Cag ++L +ag+l
  EHT98388.1  37 AAQLTRAPLEAQIVSADGQPVRDAQGRWLHVDADFSQAEAS---DIVLVGGMALgRDRFPHHPeaviQAGTWIKKMYHQGAIVGAACAGCLVLGEAGLL 132
                 67799999*************************88865554...578889987523444444433337789**************************** PP

                 TTSEE--SGGGHHHHHHTTSEE-SS......SEEEETTEEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI 114 kgrrvTsypavkdklekagakyvdk......rvvvdgnlvTsrgpgaaiefalell 163
                 ++rr+T+ + + ++l    ++y d       +  + +n++T  gp +  +++l ll
  EHT98388.1 133 SRRRCTTTWWLFPTL---RERYPDArpvwgqTLEQQENIITTGGPLSWSALTLHLL 185
                 ***************...44444444444448999999999999998888888776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 THHHHHHTTTTTTSEE--SGGGHHH CS
   DJ-1_PfpI 103 gpqlLaaagvlkgrrvTsypavkdk 127
                 g+ lL+++  ++ r+v++  +++d+
  EHT98388.1 279 GACLLLENPTVSIRKVAADCGYSDE 303
                 5566666666777777666666654 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.6e-08   0.00027      10      42 .]     241     273 ..     234     273 .. 0.89
   2 !   27.4   0.0   7.1e-10   2.6e-06       6      42 .]     288     323 ..     283     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.6e-08
                 -HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  10 tiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 t e++A++l++S+++++r++k  tG++P++++t
  EHT98388.1 241 TAERLASALHTSERTLHRKMKMLTGESPKAFIT 273
                 55899**************************96 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 7.1e-10
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +   +i+ +A+ +g+ ++s F+++F +++ mtP  yr+
  EHT98388.1 288 T--VSIRKVAADCGYsDESSFRKAFNQVMAMTPARYRQ 323
                 4..89*******************************97 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.8e-07     0.001      10      41 ..     233     265 ..     229     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.8e-07
      HTH_11  10 leargp.isgeeLAeeLnvSrrtvrrdIkaLee 41 
                 ++ ++p i++e+LA  L+ S+rt +r +k L+ 
  EHT98388.1 233 IRYQQPgITAERLASALHTSERTLHRKMKMLTG 265
                 4566677**********************9875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00023      0.82      14      42 ..     236     264 ..     231     266 .. 0.93
   2 ?    3.9   0.0     0.011        38      11      30 ..     282     301 ..     281     303 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00023
      HTH_24  14 knprisqreLAerlglSpstvnrrlkrLe 42 
                 ++p+i+   LA +l+ S  t++r +k L+
  EHT98388.1 236 QQPGITAERLASALHTSERTLHRKMKMLT 264
                 58************************995 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
      HTH_24  11 lLqknprisqreLAerlglS 30 
                 lL +np  s+r +A  +g S
  EHT98388.1 282 LLLENPTVSIRKVAADCGYS 301
                 799************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2740.15
//
Query:       EHT98389.1  [L=295]
Description: endo-1,4-beta-xylanase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-68  229.2   0.0    7.1e-68  229.1   0.0    1.0  1  Glyco_hydro_10  Glycosyl hydrolase family 10
  ------ inclusion threshold ------
      0.075   12.9   0.2       0.15   11.9   0.0    1.5  2  DUF3142         Protein of unknown function (DUF3142)


Domain annotation for each model (and alignments):
>> Glyco_hydro_10  Glycosyl hydrolase family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.1   0.0   7.9e-72   7.1e-68      33     315 ..       3     292 ..       1     293 [. 0.93

  Alignments for each domain:
  == domain 1  score: 229.1 bits;  conditional E-value: 7.9e-72
                     HH-SEEEESSTTSHHHHCSBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESSS--HHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTTTESEEEEE CS
  Glyco_hydro_10  33 kefnsltaeNemKwealepsegnftfekadklvdfakennmkvrGHtLvWhsqlPdwvkkengskaeeallkrlenhiktvverykgkiyawDVV 127
                     ++ + +++eN++Kw  ++p++++++f+  d+l++fa+++++ +rGHt +Wh  +Pdw+       +++ l+k+l++hi+tv++ry+g+i++wDV 
      EHT98389.1   3 SQASIIVPENALKWVVVQPEQNRYDFSGPDTLAAFARAQGLLLRGHTFCWHRAVPDWLLAI--R-DATLLEKVLRDHIHTVAGRYRGQIQSWDVA 94 
                     67789******************************************************97..3.34589************************* PP

                     ES-B-TTS...CSBE-SHHHHHHTTHHHHHHHHHHHHH-TTSEEEEEESSTTST....SHHHHHHHHHHHHHHHTT----EEEE--EEETTSC.. CS
  Glyco_hydro_10 128 NEavddng...gslresvwyqilGedyiekAFeaAreadpdakLyyNDYnieea....nakrkavvelvkelkekgvpidgvGiQsHlsvdsp.. 213
                     NE+++ ++   g++r+s wyq lG+ y+++A  a ++ dp+a ++yNDY +e++    ++kr+av+ l+++l+++ +pi ++GiQsHl+++ +  
      EHT98389.1  95 NEIINLSDglpGGWRNSFWYQRLGTRYLDIACDALHQTDPHAVICYNDYGLESDhdnaQRKRDAVLALLRNLQDRQIPIGALGIQSHLKAGPQya 189
                     *****99999***************************************999877766789***************************9987755 PP

                     HHHHHHHHHHHHHTTTSEEEEEEEEEECETTSSHHHHHHHHHHHHHHHHHHHHHCTTTEEEEEESSSBGGGSTTHHHST....TEC--SSB-TTS CS
  Glyco_hydro_10 214 siseieaalkklaalglevaitELDirvkkssseeealeaqakrykelvkallevkekitgvtvWgvtDkysWlsglkk....keeapllfdsny 304
                     s   + ++++++ algl v+itELD+++++    + ++ a a++y+ +++ +le+   +++v++Wgv D     + + k      + pllf ++ 
      EHT98389.1 190 SGPGLATFIREVKALGLAVYITELDVDDSRLPM-ARRAMAVASTYNRYLSLVLEAG--VDAVLTWGVWDTPHRTAATPKasdgLATGPLLFAKDG 281
                     77899***********************99886.788899**************88..***********988777766667777899******** PP

                     -B-HHHHHHHH CS
  Glyco_hydro_10 305 qpkpayeavvd 315
                     q k+a +av++
      EHT98389.1 282 QIKDASWAVLH 292
                     ********986 PP

>> DUF3142  Protein of unknown function (DUF3142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.71   6.4e+03      79      96 ..      55      72 ..      54      81 .. 0.75
   2 ?   11.9   0.0   1.7e-05      0.15      42     128 ..     143     235 ..     128     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.71
     DUF3142 79 aLPaWldspelesllaqv 96
                a+P+Wl + + ++ll++v
  EHT98389.1 55 AVPDWLLAIRDATLLEKV 72
                789999888877777766 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.7e-05
     DUF3142  42 agleiDhDaasarLpayaafLraLrsa.lpaelkLsi....taLPaWldspelesllaqvDesvLqvh..avsdPrrgLfDatqaqaWaeqyar 128
                  gle DhD a ++  a  a+Lr+L+++ +p   +L+i     a P++ + p l++++++v    L v+   ++   ++L  a++a+a a+ y+r
  EHT98389.1 143 YGLESDHDNAQRKRDAVLALLRNLQDRqIPI-GALGIqshlKAGPQYASGPGLATFIREVKALGLAVYitELDVDDSRLPMARRAMAVASTYNR 235
                 69**********************9751554.555542111788****************9998887622345556677777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2220.45
//
Query:       EHT98390.1  [L=320]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-72  243.4   0.0    3.3e-72  243.2   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.14   12.2   0.0          2    8.5   0.0    2.3  2  DUF3860       Domain of Unknown Function with PDB structure (
       0.15   12.1   0.0        1.8    8.6   0.0    2.5  2  BMC           BMC domain


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   0.0   5.5e-76   3.3e-72       2     292 ..      19     317 ..      18     319 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.2 bits;  conditional E-value: 5.5e-76
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.......TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY.......gkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresle 91 
                   l +G++ +g+  ++++++++ ll++ +e G  f+DtA+vY       + g+se+++G++lkk ++kr+ +++atKv+   ++ k+gl++  ir+++e
    EHT98390.1  19 LTFGGNVFGW--TVDEKTSFSLLDALVEKGLFFIDTADVYsrwapgnQGGESETIIGKWLKK-SGKRDRIVLATKVGIEMSPEKQGLKPGYIRQAVE 112
                   789******9..9*********************************999*************.********************************** PP

                   HHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT CS
  Aldo_ket_red  92 eslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.releeegllelckkkg 183
                   +sl+rL+td +Dl++ Hr d ++p ++++l+a++ l+k+Gk+raiG Sn+s+++l++a    k+++  +  ++q  ynl+ re+ e++l +++++++
    EHT98390.1 113 DSLRRLQTDVIDLYQAHRDDETTP-LTDTLSAFDALIKAGKVRAIGASNYSAARLQEAldisKQHGLARYETLQPLYNLYdREEYESELEQVARENQ 208
                   ************************.*******************************************************99999************ PP

                   -EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-- CS
  Aldo_ket_red 184 vpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelk 280
                   +++i+y +l++G+l+gky++++d  +  + +   ++  +++    +e+l+++a++h+ s +q+al++++++p  +++i++a++++ql++ ++a el+
    EHT98390.1 209 LGVINYYALASGFLSGKYKKPQDASKSARGQGIIDKYLNERGKRIVEALEDVAASHDASATQVALAWLIARPSITSPIVSATSLSQLDELVKATELT 305
                   ************************998888888888************************************************************* PP

                   --HHHHHHHHHH CS
  Aldo_ket_red 281 lseeevaeldel 292
                   ls++e++el ++
    EHT98390.1 306 LSKQEIEELSQA 317
                   ********9886 PP

>> DUF3860  Domain of Unknown Function with PDB structure (DUF3860)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.067     4e+02      22      63 ..     120     159 ..     104     182 .. 0.76
   2 ?    8.5   0.0   0.00033         2       6      38 ..     238     270 ..     233     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.067
     DUF3860  22 ieilewlasqmdpnstPedltnvlekdkdilkvatvkksGar 63 
                 +++ +  + + d ++tP  lt+ l++ + ++k + v+  Ga 
  EHT98390.1 120 TDVIDLYQAHRDDETTP--LTDTLSAFDALIKAGKVRAIGAS 159
                 45555556666778888..89999999999999999988874 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00033
     DUF3860   6 lrdkikkylsererntieilewlasqmdpnstP 38 
                  +  i kyl+er +  +e le +a   d ++t 
  EHT98390.1 238 GQGIIDKYLNERGKRIVEALEDVAASHDASATQ 270
                 556799*****************9988877765 PP

>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00031       1.8       6      35 ..     133     162 ..     133     170 .. 0.89
   2 ?    0.1   0.0      0.13   7.9e+02      14      30 ..     292     308 ..     283     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00031
                 EEESHHHHHHHHHHHHHHSSEEEEEEEECT CS
         BMC   6 etrglaaaieaaDaalKaAnVelvgvekvg 35 
                 et++l+ ++ a Da +Ka++V+ +g+++ +
  EHT98390.1 133 ETTPLTDTLSAFDALIKAGKVRAIGASNYS 162
                 8999******************99998765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHSSEEEEE CS
         BMC  14 ieaaDaalKaAnVelvg 30 
                 +  +D+ +Ka++ +l +
  EHT98390.1 292 LSQLDELVKATELTLSK 308
                 6678*******999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2505.37
//
Query:       EHT98391.1  [L=435]
Description: outer membrane glucose/carbohydrate porin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-84  282.6  20.1    7.4e-84  282.3  20.1    1.1  1  OprB      Carbohydrate-selective porin, OprB family


Domain annotation for each model (and alignments):
>> OprB  Carbohydrate-selective porin, OprB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.3  20.1   4.1e-88   7.4e-84       3     378 .]      70     435 .]      68     435 .] 0.96

  Alignments for each domain:
  == domain 1  score: 282.3 bits;  conditional E-value: 4.1e-88
        OprB   3 dlaylgrlqeefdadLaklagrvdgleartsalerqgfslttk...ltgevlfavtevfggkkqnrvrLtelsftqkffddrLdirlgrgnvndefyya 98 
                 +++y++++++++++dL+kl+ + +++ +++++++r+g++++ +    + + l++++ev+g++  +++rLt+ ++++ +fd+++++++gr++v+++f   
  EHT98391.1  70 SMRYSDQWAFGANFDLQKLLDW-QDTQFQVTITDRNGRNISDQvadRRTGMLSSTQEVYGRG--QTWRLTQFWLSKGLFDNTVNLKAGRVTVGEDF--- 162
                 799*******************.*******************9888899*************..8*******************************... PP

        OprB  99 sptgtqflnlsfcggpnnnvsvdslayywPvaslGervrynptpelaaqgGvfddnpttlnpygslsgftfigsggtgigvpvelgwalnsggngllpG 197
                  ++  +f+nl+f++g+++n + ++ + +wPv+++G+r+++n+tpe++ q+G++++n +++      +gf + +s+++g +vpvelgw+++  g ++lpG
  EHT98391.1 163 DNFDSKFQNLAFGSGQAGN-WRGDRWFNWPVSQWGGRLKVNVTPEVFFQVGFYNQNRANYDR---GDGFRLDTSNSEGNLVPVELGWKPT-LGPDKLPG 256
                 *******************.99999*************************************...*************************.9******* PP

        OprB 198 kykagaqlntapfddvrldltyvnaylttlantnfseladgkqgnslgveqaltradg..srgltlfarasvadgnteiwtygvslGlpdlGpfdgRpg 294
                 +y++g+++++a+ d+++   +  +ay+          ++++ +g+++ ++q+lt ++g  srgl++ ++a+++d++t+ +++++s+ ++ +Gpfd+Rp+
  EHT98391.1 257 NYRIGYYYSSANGDNYGSWRD--GAYQ----------RKNHAYGGYVLLQQQLTAQGGdaSRGLGVTVQAVMNDHKTSKTDNYQSVSFTWKGPFDARPQ 343
                 *****************9988..4455..........78889*************999***************************************** PP

        OprB 295 DtlGiaagvqplssgaranqldtalvtgi.......glpnq.gteyvlElfYkyqltdnlsitPdlqyiinPggntdnanaaviGlrttftF 378
                 D++Gi+a++ +++s+ +   ++++ ++g+       +lp+q g ey++E++Y++qlt++l ++P+lqy++ Pg+ +d+++a+v G+ ++++F
  EHT98391.1 344 DEIGIGAARIHVNSAYTRSLREQNDASGQtdfnsptYLPVQdGSEYNYEIYYNAQLTKWLQLRPNLQYVVAPGAVSDVKDAFVGGISANVNF 435
                 *********************999999999*****9777762689******************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3592.25
//
Query:       EHT98392.1  [L=103]
Description: hypothetical protein CKS_4755 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-06   25.2   0.5    1.3e-05   24.8   0.5    1.3  1  Cupin_2   Cupin domain
    0.00022   20.9   0.0    0.00027   20.6   0.0    1.1  1  3-HAO     3-hydroxyanthranilic acid dioxygenase
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.019   14.6   0.1    1.2  1  Cupin_3   Protein of unknown function (DUF861)
      0.043   13.5   0.0      0.045   13.5   0.0    1.1  1  Cupin_6   Cupin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.5     3e-09   1.3e-05      12      70 ..      38      97 ..      26      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3e-09
                EEECSSSEEEEEEEEESEEEEEECTE....EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2 12 pshrHpgedeffyVleGegeltvdge....eveleaGdsvyfpagtpHrfrNtgdeparllvv 70
                ++h+ +g+ e+f V +G +e+++ ++    +v+l++Gd++y   gt+H  +  g  +ar+lv+
  EHT98392.1 38 KWHINDGQ-EVFAVMDGCVEMHYKENgdirTVRLQTGDIFYASVGTEHVAHPQG--EARVLVI 97
                58999999.********9999966555699******************998888..7777666 PP

>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.9e-08   0.00027      47     108 ..      38      99 ..      28     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.9e-08
                 -EEE-SS-EEEEEEES-EEEEEEETTCCCEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE CS
       3-HAO  47 dyhleegeeffyqkkGdmvlkvldegkardivireGeifllParvphsPqrfadsvGlvver 108
                  +h+++g+e+f   +G + ++  ++g+ r + ++ G+if      +h      ++  lv+e+
  EHT98392.1  38 KWHINDGQEVFAVMDGCVEMHYKENGDIRTVRLQTGDIFYASVGTEHVAHPQGEARVLVIEK 99 
                 79***************************************999999988888888899987 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   4.3e-06     0.019       4      61 ..      24      83 ..      21      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.3e-06
                CTCCEEEEEEEECEEEEECESSEEEEEEEECEEEEEET.TTEE...EEEETTEEEEE-TTEE CS
     Cupin_3  4 lgvfswgiwectpGkfrltyeedEfcyileGevkvtpe.gget...velraGDlvvlpkgls 61
                +g+     w  +p k++ + + +E + ++ G v+   + +g +   v+l+ GD+++   g++
  EHT98392.1 24 DGTTVRLHWTDQPYKWHINDG-QEVFAVMDGCVEMHYKeNG-DirtVRLQTGDIFYASVGTE 83
                666667778888877766543.89*******9999877433.3356**********999985 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.045      23      85 ..      34      97 ..      16     103 .] 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
     Cupin_6 23 tapwslrfpaglalhvvlrGscwli.dpasg.epvrLsagdvvllpggephvladspgtaplavi 85
                 +p   ++ +g ++++v+ G + ++ ++ +  ++vrL++gd+     g++hv + + + a + vi
  EHT98392.1 34 DQPYKWHINDGQEVFAVMDGCVEMHyKENGDiRTVRLQTGDIFYASVGTEHVAHPQGE-ARVLVI 97
                44555566777899***********655544899******************955544.445455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 897.94
//
Query:       EHT98393.1  [L=192]
Description: putative DNA topology modulation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00019   22.0   0.0     0.0004   20.9   0.0    1.6  1  AAA_18          AAA domain
    0.00031   20.2   0.0    0.00041   19.8   0.0    1.2  1  IPT             Isopentenyl transferase
     0.0018   18.1   0.0      0.003   17.3   0.0    1.4  1  Cytidylate_kin  Cytidylate kinase
      0.003   17.6   0.0     0.0072   16.4   0.0    1.6  2  MMR_HSR1        50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.015   15.9   0.0       0.02   15.4   0.0    1.3  1  ABC_tran        ABC transporter
       0.02   14.5   0.0      0.024   14.2   0.0    1.2  1  CobU            Cobinamide kinase / cobinamide phosphate guan
      0.028   14.7   0.0      0.043   14.1   0.0    1.4  1  AAA_28          AAA domain
      0.038   13.7   0.0       0.05   13.3   0.0    1.2  1  AAA_24          AAA domain
      0.039   13.7   0.0      0.073   12.8   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
      0.044   13.9   0.0      0.065   13.4   0.0    1.3  1  SKI             Shikimate kinase
       0.05   13.8   0.0      0.097   12.8   0.0    1.6  1  AAA_33          AAA domain
      0.075   13.5   0.0        0.1   13.0   0.0    1.3  1  AAA             ATPase family associated with various cellula
       0.11   12.3   0.0       0.19   11.4   0.0    1.3  1  IstB_IS21       IstB-like ATP binding protein
       0.24   11.8   0.0       0.36   11.3   0.0    1.3  1  RNA_helicase    RNA helicase
       0.24   11.4   0.0       0.37   10.8   0.0    1.4  1  AAA_14          AAA domain


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.3e-07    0.0004       1      50 [.      14      58 ..      14     111 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.3e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdesk 50
                I+++G++ +GK+tla +++++   +  ++++ +  +   +++++   +++
  EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEKQ--SLPVIHLDQLYHQPNTDWQP---REH 58
                9********************8..55555555554444444444...222 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.4e-07   0.00041       6      39 ..      16      47 ..      13      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.4e-07
         IPT  6 ifGatttGKtaeaiklaketgapvivlDRvqcys 39
                i+G+  +GK+  a+++a+++++pvi lD +  y+
  EHT98393.1 16 IMGPSNSGKSTLAVAIAEKQSLPVIHLDQL--YH 47
                99**************************54..55 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.5e-06     0.003       1      34 [.      14      47 ..      14      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
                    EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaeklglkyldtgalYR 34
                    i i GP+ sGKs++a a+aek +l ++   +lY 
      EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEKQSLPVIHLDQLYH 47
                    7899********************9999999986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     6e-06    0.0072       1      23 [.      13      35 ..      13      62 .. 0.87
   2 ?   -2.0   0.0       3.1   3.7e+03      19      42 ..     112     135 ..     104     151 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6e-06
                EEEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgek 23
                +++i+G +N+GKStL  a+ +++
  EHT98393.1 13 RICIMGPSNSGKSTLAVAIAEKQ 35
                699*************9999874 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
                 HHTSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  19 ltgekaivsdkpgtTrdinegrvk 42 
                  + ++ ++++ +g T +in + ++
  EHT98393.1 112 CCATTPRAGALQGSTDHINLAMLR 135
                 444566788888999999887665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.7e-05      0.02      10      36 ..      10      36 ..       8      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
                TTSEEEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllk 36
                 g ++ i+G++ +GKStL+ ++a++ +
  EHT98393.1 10 LGPRICIMGPSNSGKSTLAVAIAEKQS 36
                578999****************98765 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     2e-05     0.024       1      49 [.      14      68 ..      14     106 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
        CobU  1 ilvtGgarSGKSefAeklaeeskekvvYiATaeal.DeemaeR.....iarHrer 49
                i ++G++ SGKS++A ++ae+++ +v+++    ++ +++++ R     ++ Hre 
  EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEKQSLPVIHLDQLYHQpNTDWQPRehavfLQLHREA 68
                5699**********************99988777767777777444445556655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.6e-05     0.043       1      82 [.      13     101 ..      13     136 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
      AAA_28   1 kivitGgestGKTtlleaLaar.gypvv...pEaareileeklakgedalpwvedllafaervleeqleee...aaaaankvlfcDrgl 82 
                 +i+i+G++ +GK+tl+ a+a++   pv+   + ++   ++ + +++   l+ +++++  ++ v+e  + ++   + a+a +++++D  +
  EHT98393.1  13 RICIMGPSNSGKSTLAVAIAEKqSLPVIhldQLYHQPNTDWQPREHAVFLQLHREAISAERWVIEGNYTRClpeRLARATGYILLDLAM 101
                 79******************875677774322222222222223333333333555666666666555554333555666666666555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.2e-05      0.05       3      22 ..      12      31 ..      10      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 +i+i+Gps +GK+tla  +
  EHT98393.1 12 PRICIMGPSNSGKSTLAVAI 31
                79**************9776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.1e-05     0.073      25      41 ..      14      30 ..       6      33 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.1e-05
      AAA_29 25 tlltGpsGsGKSTllDA 41
                + ++Gps sGKSTl  A
  EHT98393.1 14 ICIMGPSNSGKSTLAVA 30
                689**********9655 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.4e-05     0.065       2      29 ..      21      48 ..      20      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.4e-05
                TSSHHHHHHHHHHHHTSEEEEHHHHHHH CS
         SKI  2 GaGKstvGkllAkklglefiDlDeliek 29
                 +GKst++ ++A+k +l++i lD+l  +
  EHT98393.1 21 NSGKSTLAVAIAEKQSLPVIHLDQLYHQ 48
                69**********************8654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.1e-05     0.097       4      36 ..      16      48 ..      14     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.1e-05
      AAA_33  4 lvGlpGsGKstlaerllkklgavllssdtlrrr 36
                + G++ sGKstla  +++k+   ++  d+l+ +
  EHT98393.1 16 IMGPSNSGKSTLAVAIAEKQSLPVIHLDQLYHQ 48
                68***************9999767666665544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.6e-05       0.1       1      30 [.      14      43 ..      14      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.6e-05
                EEEESSTTSSHHHHHHHHHHHHTHEEEEEE CS
         AAA  1 vllyGppGtGKTllakavakelgvefleis 30
                ++++Gp   GK++la a+a++ + +++ ++
  EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEKQSLPVIHLD 43
                5899*****************999998775 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.19      50      70 ..      14      34 ..      10      39 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
   IstB_IS21 50 ivllGpsGvGKshlaialgve 70
                i+++Gps  GKs la+a++ +
  EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEK 34
                89****************976 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003      0.36       1      23 [.      14      36 ..      14      62 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  i++ Gps+ GKStla  +a++ +
    EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEKQS 36
                  799************99887654 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00031      0.37       5      43 ..      14      69 ..      11     129 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
      AAA_14  5 lvitGaRrvGKTtllkqlikell.................vkkesilyinldderd 43
                ++i+G+  +GK+tl+  +++++                   ++e+ ++++l +e  
  EHT98393.1 14 ICIMGPSNSGKSTLAVAIAEKQSlpvihldqlyhqpntdwQPREHAVFLQLHREAI 69
                789**************998887565554444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1601.31
//
Query:       EHT98394.1  [L=174]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   64.4   0.0    1.4e-17   64.3   0.0    1.0  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    1.4e-16   60.8   0.1    1.7e-16   60.5   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.8e-10   40.1   0.0    5.7e-10   39.5   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      5e-10   40.2   0.0    6.4e-10   39.9   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.7e-06   28.0   0.0    2.7e-06   27.3   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00026   21.1   0.0    0.00042   20.4   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0019   18.1   0.0     0.0029   17.6   0.0    1.2  1  DUF5556          Family of unknown function (DUF5556)
  ------ inclusion threshold ------
      0.046   13.9   0.2      0.071   13.3   0.2    1.4  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
       0.05   13.6   0.0      0.092   12.7   0.0    1.4  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0     7e-21   1.4e-17       7     154 ..       9     157 ..       3     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 7e-21
  Acetyltransf_4   7 eDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvaesdrivGyaylgqfkkr.akdwkaelsvylaerdnnkeglgrelid 100
                     + +  +++iya  vv     fe + +   e++ +le++ + +   f v+e++++ Gy+ylg  ++r a++   e s y+ + + + +g+g+ l++
      EHT98394.1   9 DHIPTLQQIYAHHVVHGTGSFELDPPDEAELASRLEKIRAAGLPWFVVIEDGQVCGYCYLGFYRPRpAYRFTLEDSLYI-HPAFQGKGVGKRLLA 102
                     44678999**9999999999**999*************9999999**********************************.599************ PP

  Acetyltransf_4 101 aleqvlkeqnienllaei.aspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                     + ++ +   ++++++  +  s+n++si++h + GF+++g +  +++k grw D +
      EHT98394.1 103 HAIDWAESRGFRQMVGNVgDSANAASIALHRSAGFTVAGTLTSVGYKHGRWLDTV 157
                     ******************7788*******************************86 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   8.5e-20   1.7e-16      20     117 .]      38     137 ..      17     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 8.5e-20
                     HHHHHHHHHHSTTC.EEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT.EHHHHHH CS
  Acetyltransf_1  20 seeefeesfsleae.gllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed.ndaairl 111
                     +++ + e   + a+  ++v+ edg++ G++ l  + + ++++ +  +sl+++p+++gkG+G++Ll +++++a+++g++ +v  v ++ n a+i+l
      EHT98394.1  38 ELASRLEKI-RAAGlPWFVVIEDGQVCGYCYLGFYRPrPAYRFTLEDSLYIHPAFQGKGVGKRLLAHAIDWAESRGFRQMVGNVGDSaNAASIAL 131
                     222233332.344557888***********8877777899*************************************99666899999******* PP

                     HHH.TTE CS
  Acetyltransf_1 112 Yek.lGF 117
                     + +  GF
      EHT98394.1 132 H-RsAGF 137
                     *.55**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   2.8e-13   5.7e-10       6      75 ..      54     138 ..      49     139 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 2.8e-13
                     EEEEETTEEEEEEEEEEES......TCTEE....EEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEE..THH.HHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld......aeitr....laVdpeyrgkGiGraLleaae.....kgiile.qlel..nae.kaikfYeklGFe 75 
                     fV+ +dg+++G+++l  +       +        l+++p+++gkG+G++Ll++a+     +g++ + + ++  +a+ ++i++ ++ GF+
      EHT98394.1  54 FVVIEDGQVCGYCYLGFYRprpayrF---TledsLYIHPAFQGKGVGKRLLAHAIdwaesRGFR-QmVGNVgdSANaASIALHRSAGFT 138
                     889999*******9999999986542...24557*****************9833444466644.222233322223667799999997 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   3.2e-13   6.4e-10       7     138 .]       6     138 ..       2     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 3.2e-13
  Acetyltransf_3   7 lteeDlealfelrsdpevmrylpe...pltleeaeewlerawaeeseeegygwaivlkdtgviGsv..glrdleeedee.aelgymlapsfwgkG 95 
                     ++++++++l ++++++ v+  ++    p++++e  ++le++ ++     g+ w +v +d++v G++  g+++  +  ++ +e +++++p+f+gkG
      EHT98394.1   6 AQDDHIPTLQQIYAHHVVHGTGSFeldPPDEAELASRLEKI-RA----AGLPWFVVIEDGQVCGYCylGFYRPRPAYRFtLEDSLYIHPAFQGKG 95 
                     567899***99***877775433355588888888888864.33....78999997777767***9556665555554489999*********** PP

  Acetyltransf_3  96 yateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +++  ++ ++++a ++   +++  v d  N aSi++++++Gf+
      EHT98394.1  96 VGKRLLAHAIDWAESRGFRQMVGNVGDSANAASIALHRSAGFT 138
                     *************777766667777799**************6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.3e-09   2.7e-06      28     111 ..      48     142 ..      33     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.3e-09
  Acetyltransf_10  28 egealllvaeeggkivGvi..elrdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp..yavpfYeklGFkavg 110
                      +     +v+ e+g+++G++  + ++ +          l+++p+++g+G+gk+Ll ++++ ae +g ++   +v  s   + +++ ++ GF++ g
       EHT98394.1  48 AAGLPWFVVIEDGQVCGYCylGFYRPRpayrftLEDSLYIHPAFQGKGVGKRLLAHAIDWAESRGFRQmVGNVGDSAnaASIALHRSAGFTVAG 141
                      56666788888899999994433333357755333468*************************9999998888666623557788888888776 PP

  Acetyltransf_10 111 e 111
                       
       EHT98394.1 142 T 142
                      5 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.1e-07   0.00042      29      59 ..      84     114 ..      58     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.1e-07
  Acetyltransf_CG  29 hTeVpeelrGkGiAkkLvkaalddareeglk 59 
                        +++++++GkG++k+L  +a+d+a+++g++
       EHT98394.1  84 SLYIHPAFQGKGVGKRLLAHAIDWAESRGFR 114
                      5689***********************9986 PP

>> DUF5556  Family of unknown function (DUF5556)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06    0.0029     118     174 ..      34      90 ..      24      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
     DUF5556 118 pevasspsyltvprrsplpvflrpsdrcvcggcylgkstrrtacqsllsdplgtfpa 174
                 p+ a   s l   r + lp f+   d  vcg cylg    r a +  l d l   pa
  EHT98394.1  34 PDEAELASRLEKIRAAGLPWFVVIEDGQVCGYCYLGFYRPRPAYRFTLEDSLYIHPA 90 
                 56677778899999*************************************999998 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.5e-05     0.071      71     130 ..      51     115 ..       6     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
  Acetyltransf_6  71 lrlyvlrldgrpvAvalglrsgdrlyywlg....gy.dpelaklspgllllweliedaaeeGlrr 130
                     l  +v+  dg++ +++++  ++ r  y ++     y +p++ + ++g+ ll+++i++a  +G+r 
      EHT98394.1  51 LPWFVVIEDGQVCGYCYLGFYRPRPAYRFTledsLYiHPAFQGKGVGKRLLAHAIDWAESRGFRQ 115
                     3444555589999999999999877777662222345999**********************996 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.6e-05     0.092      26      80 ..      84     140 ..      78     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
                 EEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEE..EEETT-HHHHHHHHHHT-EEE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiaergktvll..vvvasNtpsirlyeklGfeki 80 
                 +l+++p ++++G g+rl +  +     rg   ++  v   +N +si+l  + Gf+++
  EHT98394.1  84 SLYIHPAFQGKGVGKRLLAHAIDWAESRGFRQMVgnVGDSANAASIALHRSAGFTVA 140
                 689**************99988888889988888334457899**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1511.28
//
Query:       EHT98395.1  [L=270]
Description: putative DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-40  135.6   0.1    1.1e-39  135.2   0.1    1.2  1  IclR            Bacterial transcriptional regulator
    4.2e-14   52.1   0.0    8.2e-14   51.1   0.0    1.5  1  HTH_IclR        IclR helix-turn-helix domain
    8.4e-05   22.4   0.0    0.00016   21.5   0.0    1.4  1  MarR_2          MarR family
      0.001   19.0   0.0     0.0023   17.8   0.0    1.6  1  MarR            MarR family
     0.0041   17.6   0.0       0.01   16.3   0.0    1.6  1  DcpS_C          Scavenger mRNA decapping enzyme C-term bindin
  ------ inclusion threshold ------
      0.012   16.0   0.1       0.04   14.2   0.0    1.9  2  Rrf2            Transcriptional regulator
      0.012   15.4   0.0       0.11   12.5   0.0    2.1  2  TrmB            Sugar-specific transcriptional regulator TrmB
      0.018   14.6   0.0       0.04   13.5   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.024   14.8   0.0      0.046   13.9   0.0    1.4  1  Apo-CII         Apolipoprotein C-II
      0.061   13.6   0.0       0.16   12.2   0.0    1.7  1  Rio2_N          Rio2, N-terminal
      0.083   12.9   0.0       0.21   11.6   0.0    1.7  1  HTH_36          Helix-turn-helix domain
        0.1   12.6   0.0       0.24   11.4   0.0    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.15   12.2   0.2       0.49   10.6   0.0    1.9  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.1   8.1e-43   1.1e-39       2     128 ..     139     264 ..     137     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 8.1e-43
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHH..HT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeelealler..lelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvs 98 
                 r+ra+  iG+++ply++a+GK++La+ +ee+l +++++  + +++lt++Tit+  e+++eL  + +q  a+dreE+e+gv+ciAap+fd +++v +Avs
  EHT98395.1 139 RTRAY--IGQHMPLYCSAMGKIFLAWGSEEYLLHYWQShqDSIEQLTKNTITTLPEMQQELRDILQQRTAMDREENELGVTCIAAPVFDIQQRVPYAVS 235
                 45666..*****************************986688********************************************************* PP

                 EEEETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR  99 vsgptarlteeelkeellalvreaArkisr 128
                 vs pta+l++ ++k+ l+a+v ++A++is+
  EHT98395.1 236 VSLPTAKLQQIGAKN-LMAKVVATAQAISH 264
                 ***************.************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0     6e-17   8.2e-14       1      51 [.      21      71 ..      21      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 6e-17
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                sl R+l+++++l+  p +  l+ lA+ +g++kStvhRlLq L+  Gyv+q 
  EHT98395.1 21 SLFRGLQLIELLSNFPNGCPLAHLAELSGMNKSTVHRLLQGLHSSGYVTQA 71
                788**********************************************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.1e-07   0.00016      14      58 ..      32      75 ..      26      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-07
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2 14 LgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpe 58
                L + p + +  + la+  g+ ks+v+r+l+ L + G+v++ p+p+
  EHT98395.1 32 LSNFP-NGCPLAHLAELSGMNKSTVHRLLQGLHSSGYVTQAPSPG 75
                44444.447999****************************99985 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0023       8      57 ..      28      78 ..      25      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
                HHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  8 iLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                ++++l++ ++ + ++ La+ +g++kstv r+l  L   G+++  +sp+  R
  EHT98395.1 28 LIELLSNFPNgCPLAHLAELSGMNKSTVHRLLQGLHSSGYVTQAPSPGSYR 78
                56788889988********************************99998765 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.6e-06      0.01      36      87 ..     167     217 ..     162     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.6e-06
                 EEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EEEEE--SCC CS
      DcpS_C  36 hllvipkrdikslrdLtkehlpllkemrekakkvieekynevdaeelrvgvh 87 
                 +ll   +++ +s+++Ltk+ +  l em+++++++++++  ++d+ee  +gv 
  EHT98395.1 167 YLLHYWQSHQDSIEQLTKNTITTLPEMQQELRDILQQRT-AMDREENELGVT 217
                 55555666***************************9999.789999999985 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.9e-05      0.04      17      68 ..      31      80 ..      20      87 .. 0.82
   2 ?   -1.8   0.1       3.1   4.2e+03       4      38 ..     227     263 ..     225     266 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEES CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLa 68
                L ++  ++ + ++++ae  ++++s + ++l+ L  +g+v+    + G yrL+
  EHT98395.1 31 LLSNFPNG-CPLAHLAELSGMNKSTVHRLLQGLHSSGYVTQAPSP-GSYRLT 80
                44444455.8999**************************998877.888886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.1
                 -HHHHHHHHHHHHHHHSSTCC-..B-HHHHHHHHTS- CS
        Rrf2   4 sskteyalhallyLakeeeeep..vsseeiaerqnis 38 
                 ++++ ya+ + l  ak ++ +   + ++ +a+ q is
  EHT98395.1 227 QQRVPYAVSVSLPTAKLQQIGAknLMAKVVATAQAIS 263
                 6777888877776666554332236666666666666 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.6e-05      0.11      27      57 ..      43      73 ..      39      84 .. 0.87
   2 ?    0.2   0.0      0.52   7.1e+02      17      34 ..     251     268 ..     249     270 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.6e-05
                HHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 27 eiaeelgvprskvYevLrsLedkGlVerekg 57
                 +ae +g  +s+v + L+ L + G+V+  ++
  EHT98395.1 43 HLAELSGMNKSTVHRLLQGLHSSGYVTQAPS 73
                5899**********************98765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.52
                 HHHHCCCHHCHHCCCTTS CS
        TrmB  17 Llklgpatadeiaeelgv 34 
                 L+++  ata+ i++elg 
  EHT98395.1 251 LMAKVVATAQAISHELGA 268
                 888999********9985 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05      0.04       7      48 .]      27      69 ..      25      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
      HTH_24  7 kILelLqknpr.isqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +++elL   p+ ++ + LAe +g+ +stv+r l+ L ++G+++
  EHT98395.1 27 QLIELLSNFPNgCPLAHLAELSGMNKSTVHRLLQGLHSSGYVT 69
                56677777777799999************************96 PP

>> Apo-CII  Apolipoprotein C-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.4e-05     0.046      18      57 ..     165     206 ..     153     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-05
     Apo-CII  18 qesllsYWdsAkaaAqdLYkkt..ylptvdekirdmYsksta 57 
                 +e ll YW+s + + ++L k t  +lp +++ +rd+  + ta
  EHT98395.1 165 EEYLLHYWQSHQDSIEQLTKNTitTLPEMQQELRDILQQRTA 206
                 57799*************998522799*********998887 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.16       8      57 ..      22      71 ..      19      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
      Rio2_N  8 dfrvLtavEmgmrnhevVptelieeisrlkeeevkkrlsrllkaklisrk 57
                 fr L+ +E+ +   +  p   ++e+s+++++ v++ l+ l+  + + + 
  EHT98395.1 22 LFRGLQLIELLSNFPNGCPLAHLAELSGMNKSTVHRLLQGLHSSGYVTQA 71
                6999**************************************99998764 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.21      29      55 .]      42      68 ..      34      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      HTH_36 29 etlakrlglsknTvsraikeLeqlGyi 55
                + la+++g++k+Tv r ++ L   Gy+
  EHT98395.1 42 AHLAELSGMNKSTVHRLLQGLHSSGYV 68
                569**********************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.24      26      52 ..      43      69 ..      35      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
                HHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreglis 52
                 lA++ G++ +tv r+l+ L   g+++
  EHT98395.1 43 HLAELSGMNKSTVHRLLQGLHSSGYVT 69
                79**********************997 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00036      0.49      27      56 ..      43      72 ..      41      75 .. 0.88
   2 ?   -2.8   0.0       5.4   7.4e+03      20      35 ..     254     269 ..     253     270 .] 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
                    HHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 27 dlaerLnvspssVsemlkkLekdGyveyek 56
                     lae  +  +s+V   l+ L++ Gyv  ++
      EHT98395.1 43 HLAELSGMNKSTVHRLLQGLHSSGYVTQAP 72
                    68888899******************9887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.4
                     HSSB-HHHHHHHHTS- CS
  Fe_dep_repress  20 kkvvktkdlaerLnvs 35 
                     k+v++ + ++ +L+ s
      EHT98395.1 254 KVVATAQAISHELGAS 269
                     5678888999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2013.74
//
Query:       EHT98396.1  [L=508]
Description: ATP-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-51  173.6   0.0    9.9e-31  107.1   0.0    2.2  2  ABC_tran     ABC transporter
    2.2e-10   40.9   0.1     0.0051   16.7   0.0    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.3e-07   30.5   0.0       0.03   13.8   0.0    3.2  3  SMC_N        RecF/RecN/SMC N terminal domain
    7.7e-05   22.4   0.4     0.0006   19.5   0.1    2.5  2  AAA_29       P-loop containing region of AAA domain
     0.0015   18.3   0.2     0.0055   16.4   0.2    1.9  1  AAA_30       AAA domain
     0.0039   17.1   0.0       0.01   15.7   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.037   14.4   0.0    1.7  1  AAA_16       AAA ATPase domain
      0.016   15.6   0.7       0.43   11.0   0.7    2.5  1  AAA          ATPase family associated with various cellular a
      0.021   15.3   0.0      0.034   14.7   0.0    1.2  1  AAA_23       AAA domain
       0.04   13.5   0.4       0.15   11.6   0.4    2.0  1  AAA_25       AAA domain
      0.042   13.9   0.1       0.15   12.2   0.0    2.0  2  MMR_HSR1     50S ribosome-binding GTPase
      0.075   13.0   0.0       0.21   11.6   0.0    1.8  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
       0.14   12.0   0.1       0.72    9.8   0.1    2.0  2  NACHT        NACHT domain
       0.17   11.6   0.7         22    4.7   0.1    2.9  3  IstB_IS21    IstB-like ATP binding protein
       0.22   10.1   0.0        3.2    6.3   0.0    2.0  2  AAA_13       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   8.3e-34   9.9e-31       2     137 .]      26     176 ..      25     176 .. 0.96
   2 !   64.6   0.0   1.1e-20   1.3e-17       3     137 .]     276     430 ..     274     430 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 8.3e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.................es 81 
                 ++vsl++ +ge+va++GenGaGKStL+k+lag ++ +eG+i+++g+++ +    ++ +++ +++++q+  l + +tv+en                 + 
  EHT98396.1  26 NDVSLDVFPGEVVALLGENGAGKSTLIKVLAGVYTSDEGQITFNGNPIPSaaALKTATSQPVAFIHQDLGLIEWMTVAENmalimgfnrrlglinwrAV 124
                 89**********************************************9987778889999*********************************98888 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +e++  al+ +g++ ++d +v     +LS  +k+ +a+ara++ ++++l+lDEpta
  EHT98396.1 125 RERARLALEDVGIQLDPDARV----FELSRTEKSLLAIARAVAVNAQVLVLDEPTA 176
                 888******************....*****************************97 PP

  == domain 2  score: 64.6 bits;  conditional E-value: 1.1e-20
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................xx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................es 81 
                  vs++l++ge++a+ G  GaG   + ++l gl + t+G++ +++k+ ++  ++e + + i+++  +   ++l   ++vren                 +
  EHT98396.1 276 PVSFSLQPGEMLALAGLRGAGQEEIGRMLFGLKQATQGQVIFRDKPCHSrSPREAMAAGISFVAGDrtgESLVMSMSVRENlflnpcasghrvmshyGR 374
                 69*******************************************999989**************999999999*************999999996555 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++e+ +   k++l +++ ++v+ + s LSgG +q+v++ar +  +++ll+l +pta
  EHT98396.1 375 RAEVGASWWKVQLFDVRPKNVDLDISALSGGNQQKVVMARWMHLNAPLLILEDPTA 430
                 5556677778889999999**9999*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.2e-06    0.0051       2      37 ..      38      65 ..      37      92 .. 0.68
   2 !   10.6   0.0    0.0003      0.36     233     297 ..     144     205 ..     109     211 .. 0.87
   3 !   10.1   0.0   0.00043      0.52     221     300 ..     386     462 ..     326     465 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.2e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdels 37
                 +l G Ng+GKS+L++ l ++           de +
  EHT98396.1 38 VALLGENGAGKSTLIKVLAGVYT--------SDEGQ 65
                689***************98743........22222 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0003
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  ++elS   k+lla++ a++  +    +l++DEp ++L    +r+l+ ++++l+++++  i +TH
  EHT98396.1 144 RVFELSRTEKSLLAIARAVAVNA---QVLVLDEPTASLPANDVRHLFSVIERLKSRNVGMIYVTH 205
                 45777999****99999999988...9***********************999999999999999 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00043
      AAA_21 221 vvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 + f ++++  +l+++ lS G ++   ++ +++  +   +ll++++p +g +  + ++++ ll+++ + g+ v++ + + +
  EHT98396.1 386 QLFDVRPKNVDLDISALSGGNQQKVVMARWMHLNA---PLLILEDPTAGVDVGAREEIYHLLNKALADGVAVLVISNDLE 462
                 55667777788888888999999866666666666...************************777777***999998765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0015       1.8      22      44 ..      33      55 ..      25      65 .. 0.83
   2 !   13.8   0.0   2.5e-05      0.03     127     210 ..     132     219 ..      59     228 .. 0.82
   3 !    5.7   0.0    0.0075       8.9     129     198 ..     394     460 ..     219     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
                TTSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 22 fsksftaivGpNGSGKsnlldAi 44
                f  ++ a++G+NG+GKs l+  +
  EHT98396.1 33 FPGEVVALLGENGAGKSTLIKVL 55
                5567889***********99765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.5e-05
                 HHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH.HCTTSEEEEE-SS.HHHCCC-SCEEE CS
                 xxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N 127 lesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke.ksknaQfivislr.eemlekadklvg 210
                 le++gi+ +      +LS+ ek+L+a+a  +A+++     + +lDe  a L ++ v+ + +++++ ks n+ +i +++r +e++e ad+++ 
  EHT98396.1 132 LEDVGIQLDpdarvfELSRTEKSLLAIARAVAVNA----QVLVLDEPTASLPANDVRHLFSVIERlKSRNVGMIYVTHRlDEVIEIADRICV 219
                 4555555556666668************9999875....589*********************96156679*******94556677777654 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0075
                 CTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N 129 sagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr 198
                 ++++++++LSgG+++ v    ++A  +   apl +l +  a  D   ++++ +ll+++  + + ++vis +
  EHT98396.1 394 NVDLDISALSGGNQQKV----VMARWMHLNAPLLILEDPTAGVDVGAREEIYHLLNKALADgVAVLVISND 460
                 56677779****98855....5666678899************************9765444889999865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1     5e-07    0.0006      17      55 ..      30      69 ..      24      72 .. 0.85
   2 ?   -0.7   0.0      0.99   1.2e+03       3      15 ..     115     128 ..     114     138 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5e-07
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak.kvrfN 55
                +++ + +++ l G++G+GKSTl+  ++ + ++++ +++fN
  EHT98396.1 30 LDVFPGEVVALLGENGAGKSTLIKVLAGVYTSDEgQITFN 69
                5555666999*************99999999999999999 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.99
      AAA_29   3 rlqlvNWgtfdg.h 15 
                 rl l+NW   ++  
  EHT98396.1 115 RLGLINWRAVRErA 128
                 7899***9988744 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   4.6e-06    0.0055      19      96 ..      36     173 ..      32     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.6e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.................................... 81 
                  v++l G  G+GK+t++k+l+ ++++++g++         A++L++++  + + i++ l   +                                    
  EHT98396.1  36 EVVALLGENGAGKSTLIKVLAGVYTSDEGQITFNGNPIPSAAALKTATSQPVAFIHQDLGLIEwmtvaenmalimgfnrrlglinwravrerarlaled 134
                 488999*********************888888888888888888777766666666665555444444444444555555566555555555555555 PP

      AAA_30  82 ........................grarlepgtllivDE 96 
                                         +ra   ++++l+ DE
  EHT98396.1 135 vgiqldpdarvfelsrteksllaiARAVAVNAQVLVLDE 173
                 555555555555555555555555333334445555565 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.6e-06      0.01      97     126 ..      33      62 ..      22      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.6e-06
                  CTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelk 126
                  + +++++l+G+ G+GKStLi++l++  +  
   EHT98396.1  33 FPGEVVALLGENGAGKSTLIKVLAGVYTSD 62 
                  56799******************9866555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.1e-05     0.037      25     142 ..      36     172 ..      24     200 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdg.giflrgkcdqlesa........ipy.......salaqalareellrqlldeaesaeleawrekleeala. 106
                 e+v l Ge G GKs+l++ l+  ++ d+  i+++g+   + +a        +++       + + +++++  l+   ++++   +++a re+ + al+ 
  EHT98396.1  36 EVVALLGENGAGKSTLIKVLAGVYTSDEgQITFNGNPIPSAAAlktatsqpVAFihqdlglIEWMTVAENMALIMGFNRRLGLINWRAVRERARLALEd 134
                 789*****************9877777524446666666622222222212111222333122444444444444444445555555555555555555 PP

      AAA_16 107 ...avpelagaea....srllellkrllallsrderplvlvlD 142
                    +   l+++++    sr    l ++++  + +++  vlvlD
  EHT98396.1 135 vgiQ---LDPDARvfelSRTEKSLLAIARAVAVNAQ--VLVLD 172
                 3332...33333345565555555555533333244..66666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   0.00036      0.43       2     117 ..      39     212 ..      38     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                 EEESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSS........................................... CS
         AAA   2 llyGppGtGKTllakavakelgve....................fleisgsellsk........................................... 37 
                  l G  G GK++l+k +a    ++                               +                                           
  EHT98396.1  39 ALLGENGAGKSTLIKVLAGVYTSDegqitfngnpipsaaalktaT----------Sqpvafihqdlgliewmtvaenmalimgfnrrlglinwravrer 127
                 688999999999999999996322222222233333333332220..........14555555566666666666667777777777777777777777 PP

                 ...................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTH CS
         AAA  38 ...................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                                     ++ +ek++ ++ +++  +a   +l++DE  a  +++           v +L+++++++k++  +v +i +t+r d++ +
  EHT98396.1 128 arlaledvgiqldpdarvfELSRTEKSLLAIARAVAVNA--QVLVLDEPTASLPAN----------DVRHLFSVIERLKSR--NVGMIYVTHRLDEVIE 212
                 888888899999999977666777777777777766666..9******99999999..........599**********94..7*********998765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.8e-05     0.034      20      40 ..      36      56 ..      23      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 ++++ G+NGaGK+T++  + 
  EHT98396.1 36 EVVALLGENGAGKSTLIKVLA 56
                57899***********98776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   0.00013      0.15      28      62 ..      31      66 ..      18     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
      AAA_25 28 gllpagelallaGapgtGKttlaldlalava..tGkp 62
                ++ p ge+++l G  g+GK+tl   la  ++  +G+ 
  EHT98396.1 31 DVFP-GEVVALLGENGAGKSTLIKVLAGVYTsdEGQI 66
                5655.9*****************99999999664433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.15       2      21 ..      38      57 ..      37      95 .. 0.81
   2 ?   -3.4   0.0       8.6     1e+04      69      86 ..     446     458 ..     429     475 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                va++G   +GKStLi+ l g
  EHT98396.1 38 VALLGENGAGKSTLIKVLAG 57
                89****************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.6
                 HHHHHHCTSEEEEEEETT CS
    MMR_HSR1  69 aflaleeadlillvvdas 86 
                 + l    ad ++++v  s
  EHT98396.1 446 KAL----ADGVAVLVI-S 458
                 222....455555543.3 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.21      19      46 ..      35      62 ..      13     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalgve 46
                g+v++L G+ GaGK+tl++ la  +  +
  EHT98396.1 35 GEVVALLGENGAGKSTLIKVLAGVYTSD 62
                789****************998776543 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0006      0.72       2      21 ..      37      56 ..      36      65 .. 0.89
   2 ?   -1.0   0.0       1.2   1.5e+03     105     128 ..     436     459 ..     419     473 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0006
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l Ge+G GK+tL++ la
  EHT98396.1 37 VVALLGENGAGKSTLIKVLA 56
                799************99876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
                 ....HHHHHCTTTTT--EEEEEEE CS
       NACHT 105 vrtlLselirkkllpeasllltvr 128
                 +r+ + +l++k+l  ++ +l+++ 
  EHT98396.1 436 AREEIYHLLNKALADGVAVLVISN 459
                 6888999**********9999875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.034        41      48      70 ..      36      58 ..      32      72 .. 0.78
   2 ?    4.7   0.1     0.019        22      97     142 ..     153     198 ..     143     213 .. 0.71
   3 ?   -2.1   0.0       2.3   2.7e+03     108     140 ..     419     450 ..     405     463 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.034
   IstB_IS21 48 enivllGpsGvGKshlaialgve 70
                e ++llG  G+GKs l   l+  
  EHT98396.1 36 EVVALLGENGAGKSTLIKVLAGV 58
                6799**********998887755 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.019
   IstB_IS21  97 gklaral.krllkvdllilDdlgllpldqaeaellfeviekryerrs 142
                  +l  ++ +  +++++l+lD+     l  ++ ++lf vie+   r+ 
  EHT98396.1 153 KSLLAIArAVAVNAQVLVLDEPT-ASLPANDVRHLFSVIERLKSRNV 198
                 44433330345678*******75.678889999******99877765 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.3
   IstB_IS21 108 kvdllilDdlgllpldqaeaellfeviekryer 140
                 ++ llil d  +  +d  ++e+++++++k+   
  EHT98396.1 419 NAPLLILEDP-TAGVDVGAREEIYHLLNKALAD 450
                 4568888885.5678899999999999987644 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0027       3.2      22      41 ..      41      60 ..      34      88 .. 0.83
   2 ?    1.6   0.0      0.07        83     526     563 ..     165     200 ..     154     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
      AAA_13 22 YGwNGaGKTtLSrllrslel 41
                 G NGaGK+tL ++l+ + +
  EHT98396.1 41 LGENGAGKSTLIKVLAGVYT 60
                59*************99854 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.07
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQ 563
                 + ++ v+D P  SL +n + + fs i+     + ++  
  EHT98396.1 165 NAQVLVLDEPTASLPANDVRHLFSVIERLK--SRNVGM 200
                 6789**********8888888888887765..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3834.90
//
Query:       EHT98397.1  [L=366]
Description: permease component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-30  104.0  35.6    7.5e-30  104.0  35.6    1.8  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.14   11.9   1.7       0.29   10.9   1.7    1.5  1  SPC25         Microsomal signal peptidase 25 kDa subunit (SPC


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2     0.045     4e+02     119     148 ..      15      46 ..       3      57 .. 0.56
   2 !  104.0  35.6   8.3e-34   7.5e-30       4     266 ..      61     323 ..      58     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.045
  BPD_transp_2 119 llgfagallsflsaviv..llalllvlavlll 148
                   ++     +++++ +v++   l+ll+vl++ll+
    EHT98397.1  15 VSLAQHGFAPWSMQVVTryGLLLLCVLLALLF 46 
                   55555556666666666663444444444333 PP

  == domain 2  score: 104.0 bits;  conditional E-value: 8.3e-34
  BPD_transp_2   4 nlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltl 100
                    +l++ a +a++Al+ +l + i+G i+l +g  ++l  ++a +l++ ++ ++ +a+l  l+++a+ gll+g+lv+   +d++++tl+  +vl++++l
    EHT98397.1  61 AILSSKAKIALLALAATLPM-IVGKIDLNVGFGIVLWHILAITLQVEYGFSWQMAVLTVLVLSALYGLLNGILVALADIDSFVATLGSGTVLYAIAL 156
                   68889999************.**************************************************************************** PP

  BPD_transp_2 101 llltgitsgvkgqssvkellgfagallsflsaviv...llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaG 194
                          + + g + v +l + ++al s+ ++ i    + +l l+l+++l+  +t++Gr ++avg+n+ aar+ Gi v+++ + +f+ s+++ g++G
    EHT98397.1 157 -------WHSGGRQIVGDLPDAFSALHSTEVFGIPigaFYVLGLALVLWLITEHTPLGRCMYAVGGNPVAARLNGIAVNKYVIGAFIASSVITGFSG 246
                   .......5666666666666666666666666666666*********************************************************** PP

  BPD_transp_2 195 allalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallil 266
                   +l+a+ +g++++++g+ + + a++ ++lG +       ++ gtv+G  i+++  + +++++g + +++ ++ ga l+l
    EHT98397.1 247 VLIAAEQGVGQASVGMDYLLPALVGAFLGSTtirpgrVNVWGTVVGIAILAIGIA-GIQQFGGAFWVEPLFNGATLLL 323
                   *************************************777777777666666555.5555555568888888888776 PP

>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.7   3.3e-05      0.29      26      75 ..      85     134 ..      70     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
       SPC25  26 tdvrLalGylavaiaavaflydykveFeeskpvlaiavvlYfilsgiltl 75 
                 +d+ + +G++   i a+++ ++y ++++    +++++ +lY +l+gil +
  EHT98397.1  85 IDLNVGFGIVLWHILAITLQVEYGFSWQMAVLTVLVLSALYGLLNGILVA 134
                 56777788888889999999999889999989999999*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2663.49
//
Query:       EHT98398.1  [L=366]
Description: periplasmic substrate-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-26   93.0   3.2    2.8e-26   92.6   3.2    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0023   17.4   0.1     0.0033   16.9   0.1    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   3.2   3.1e-30   2.8e-26       3     256 ..      60     321 ..      58     323 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 3.1e-30
                   EEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT....GCTTT- CS
  Peripla_BP_4   3 vvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd....dapsge 95 
                   ++ +d+ n+ ++ +++gl eaak +g++ +   d+ +++++Q a++++aia+ +dgi++   +++ ++  lkka +++I+ +a+ ++    +++++ 
    EHT98398.1  60 FIASDMKNGGVQGVQQGLSEAAKVAGWTLDTL-DGAGSVKDQLAALNQAIAQRPDGIVIGGWNPNVAKMPLKKALQQKIVLMAWHAEpqpgPIKQYG 155
                   6778899999999*****************96.**************************************************************** PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTT.T.ECEEEE CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltan.p.ldgila 189
                    + +++ d+ ++++l+a+y+  k ggk ++v+i++ s+    a + ++++++ +++ ++ k+++ ++ +  ++ ++  + + +ll+++ +  +  la
    EHT98398.1 156 ITDNITSDSNEVARLAAQYAIVKSGGK-AQVIIFTDSLYK-IALDKANAMKQEIEKCSECKVIDFIDtPLADTSNRMPSLTFSLLQKYgDrWQYSLA 250
                   ***************************.******777654.55579**********99*****95553556***************996689999** PP

                   SSCCHHHCHHHHHHHTTTTSTEE...EEEES-HHHHHHHHHTTSSE.EEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 190 andgmaegalealeaaglagkvv...vtgqDatpealeaikdGtid.atvaqdpyelgyaavelavallkG 256
                    nd     ++ al+ ag+ gk +   + + D++  a ++i++G  + atva++ +  g++ ++  +++ +G
    EHT98398.1 251 INDLYFDFMAPALKTAGKGGKNApynISAGDGSVSAFQRIRNGESQvATVAEPLKLHGWQLLDEFNRAFAG 321
                   ******************9998889*********************8899888888899888776666666 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.7e-07    0.0033      17      84 ..      71     139 ..      55     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.7e-07
                   HHHHHHHHHHHHHHTEEEEEEE-.SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEE CS
  Peripla_BP_1  17 ldlvkgitkaakehgvdvlllaa.geeedlakaidllkakgidgliiatsdtsfdditakaesgipvia 84 
                   + + +g+++aak  g+ +  l + g+ +d+++a+++  a+++dg++i++  +++ ++  k++ + ++++
    EHT98398.1  71 QGVQQGLSEAAKVAGWTLDTLDGaGSVKDQLAALNQAIAQRPDGIVIGGWNPNVAKMPLKKALQQKIVL 139
                   566789************9998626678899******************99998888888887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2793.61
//
Query:       EHT98399.1  [L=276]
Description: gluconolactonase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-48  164.9   0.0    2.8e-48  164.7   0.0    1.1  1  SGL           SMP-30/Gluconolactonase/LRE-like region
    4.5e-05   23.3   1.2        5.1    7.3   0.2    4.1  3  NHL           NHL repeat
      0.002   18.3   0.0     0.0059   16.8   0.0    1.7  2  Arylesterase  Arylesterase
     0.0055   16.8   0.0       0.11   12.7   0.0    3.1  3  Str_synth     Strictosidine synthase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.0   6.2e-52   2.8e-48       1     244 [.      12     266 ..      12     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 6.2e-52
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpe..svGaiaprkdgrlvvasksglall.dlasgeletladeeedekpllrfNDgvvdpd 96 
                 ++EGpvw ++ + ++++D+ g+r++ ++ +++ +  ++  +   +G + +  +gr+v ++++++a+    ++g++++l+d++e++ + +++ND+++ +d
  EHT98399.1  12 WAEGPVWLPALDGVVFSDVKGNRMYCWQRNGELS-IWRHHShyANGNARD-HQGRVVSCEHGRRAISrTETDGTVNVLVDKVEGK-RFNSPNDLAIRSD 107
                 89************************97766666.577777689999999.99**************755789*********999.************* PP

         SGL  97 GrlwfGtmgdeeakgeev.........galyrldpd.gklervlddltipNGlawspdgktlYl.....aD..sltrk.iwaydvdaeggklsnrrvfa 177
                 G +wf+++ +++++++e+         + ly +dp+ g+l+  ++dl+ pNGla+spd++ lY+     +D  +l r+ +  y+vd  g +ls+ + fa
  EHT98399.1 108 GTIWFTDPPYGIVSDHEGylapsqvigCYLYCFDPEsGQLSIAASDLQRPNGLAFSPDESVLYVadmsvVDfpTLGRHeLRTYKVD--GRTLSAGQFFA 204
                 ****************99********999***********************************4444422223333349999996..7789******* PP

         SGL 178 dlkkgegepDGlavDaeGnvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyits 244
                 d+++g   pDG++vDa+G +++ +   ++v+ fd  G+  ++i +p + v++c+FgGp+ ++Lyit+
  EHT98399.1 205 DVSPGF--PDGFCVDANGDIYCSCA--DGVIIFDSSGNRKGKIPIP-ETVSNCTFGGPNNDELYITA 266
                 ****96..**************965..89*****************.*******************7 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0052        23       1      18 [.      96     113 ..      96     118 .. 0.89
   2 !    6.9   0.0    0.0016       7.1       1      19 [.     154     173 ..     154     176 .. 0.89
   3 !    7.3   0.2    0.0011       5.1       3      16 ..     210     223 ..     209     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0052
                 BSSEEEEEEETTTEEEEE CS
         NHL   1 fnyPhGvavdsnGdiyVa 18 
                 fn+P+++a+ s+G i+ +
  EHT98399.1  96 FNSPNDLAIRSDGTIWFT 113
                 99************9955 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0016
                 BSSEEEEEEE.TTTEEEEEE CS
         NHL   1 fnyPhGvavd.snGdiyVaD 19 
                 +++P+G+a + +   +yVaD
  EHT98399.1 154 LQRPNGLAFSpDESVLYVAD 173
                 789*******9999999999 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0011
                 SEEEEEEETTTEEE CS
         NHL   3 yPhGvavdsnGdiy 16 
                 +P G +vd nGdiy
  EHT98399.1 210 FPDGFCVDANGDIY 223
                 799**********9 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.3   1.5e+04      51      65 ..      94     108 ..      90     112 .. 0.74
   2 !   16.8   0.0   1.3e-06    0.0059      43      73 ..     144     174 ..     122     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.3
  Arylesterase  51 sglssanGInidadk 65 
                   ++++s+n + i +d 
    EHT98399.1  94 KRFNSPNDLAIRSDG 108
                   789999999888876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.3e-06
  Arylesterase  43 psevkvvasglssanGInidadkkyiyvadi 73 
                   +++++ +as l+ +nG+ +++d+ ++yvad+
    EHT98399.1 144 SGQLSIAASDLQRPNGLAFSPDESVLYVADM 174
                   468999************************8 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.81   3.6e+03      67      83 ..      61      77 ..      50      83 .. 0.61
   2 !   12.7   0.0   2.4e-05      0.11      39      77 ..     137     175 ..     100     179 .. 0.78
   3 ?   -1.2   0.0      0.49   2.2e+03       7      22 ..     257     272 ..     256     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.81
   Str_synth 67 dgsfvlvcetamkrisr 83
                 +  v++ce   + isr
  EHT98399.1 61 HQGRVVSCEHGRRAISR 77
                34456677776666666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.4e-05
   Str_synth  39 llkydkstkvvkvlldkLyfanGialsedgsfvlvceta 77 
                 l+ +d++  +  + +++L+ +nG+a s+d+s + v++++
  EHT98399.1 137 LYCFDPESGQLSIAASDLQRPNGLAFSPDESVLYVADMS 175
                 788999999999*******************99999876 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.49
   Str_synth   7 eetgvlyftdsSskyd 22 
                 +++++ly+t   s y 
  EHT98399.1 257 PNNDELYITANTSLYR 272
                 5779*****9988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1920.44
//
Query:       EHT98400.1  [L=337]
Description: 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.8e-102  340.8   0.0   8.8e-102  340.7   0.0    1.0  1  Ldh_2     Malate/L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> Ldh_2  Malate/L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.7   0.0  4.9e-106  8.8e-102       1     333 []       3     330 ..       3     330 .. 0.97

  Alignments for each domain:
  == domain 1  score: 340.7 bits;  conditional E-value: 4.9e-106
                 E-HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGTGGGHHHHHHHHHTTSSBSS---EEEEEETTEEEEEETTE-HHHHHHHHHHHHHHHH CS
       Ldh_2   1 vsaeelralveavleaagvseedAeivadvlveadlrGvdsHGvarlpryverlkkgkinpkaepevvketpavavvDgdnglGqvvakkamelaieka 99 
                 +s+++l + + +vl + +v++++Ae++a++++e++l Gv+sHGv+r+pr++++l++g+i p+a+++ v + +a++++D+++++G++ a+ +me+a+++a
  EHT98400.1   3 ISYQQLYQEFLRVLLSRNVPQAKAEACAHMFTETSLNGVYSHGVNRFPRFIQQLDAGHIIPDADAQKVLSLGAIEQWDAQRAIGNITAHSMMERAMALA 101
                 689999********************************************************************************************* PP

                 HHHSEEEEEEEEEE--SSHHHHHHHHHHTTSEEEEEEEESSEB--TTBSS--BE--EEEEEEEETTSSEEEEEEESBSS-HHHHHHHHHCT---STTSE CS
       Ldh_2 100 kehGigivavrnsnhfGaagyyaemaaeaGligiaftnssplvaptggkeavlGtNPiafaaPakeeepfvlDmAtSvvargkievaarkgkpiPegwa 198
                  ehGig+va+rn+nh+++ g y+++aae+G++gi++tns ++++p+g+k   +GtNP+ +a+P+  e+  ++Dm++S++++g +ev + +gk++P + +
  EHT98400.1 102 TEHGIGLVALRNANHWMRGGSYGWQAAEKGFVGICWTNSIAVMPPWGAKSCAIGTNPLIIAVPG--EPVTMVDMSMSMFSYGMLEVNRLAGKSLPVDGG 198
                 ****************************************************************..5679***************************** PP

                 EETTSSEES-HHHHHCCCEE-BTTTHHHHHHHHHHHHHHTCTTTS-HGGGSSSSSSCTSS-SSEEEEEEEEEGGGTT.HHHHHHHHHHHHHHHHTS-BS CS
       Ldh_2 199 lDadGnpttDPaaaleggallplGghKGyglalmvelLagvLsgaatgkevsgsedeekkpaklghffiaidpeafgdaeefkervdalldelrasppa 297
                 +D++Gn t+DPa + ++ ++lp+G++KG++l++++++La++Ls +a  +ev++++++e     ++++fiaid++++ + e+ ++++d++ +++  ++pa
  EHT98400.1 199 FDDEGNYTRDPATLEKNRRILPMGYWKGSALSVVLDMLATLLSNGASVTEVTHDNGDEF---GISQVFIAIDVDRLIPGETRQQKLDRIRASITGAEPA 294
                 ******************************************88888878888773333...36*********************************** PP

                 TTTSS---TTHHHHHHHHHHHHH-EEEEHHHHHHHH CS
       Ldh_2 298 egadevllPGereaaaraerlkeGipldeavleelk 333
                 + ++ ++lPG++    r+e+++ Gip+de+v+++++
  EHT98400.1 295 DSTQAIRLPGDKFPPLREENERLGIPVDERVWARIQ 330
                 *********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2511.88
//
Query:       EHT98401.1  [L=155]
Description: hypothetical protein CKS_4764 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-41  142.2   0.0    1.2e-41  142.1   0.0    1.0  1  DUF386    YhcH/YjgK/YiaL


Domain annotation for each model (and alignments):
>> DUF386  YhcH/YjgK/YiaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   6.6e-46   1.2e-41       1     148 []       1     150 [.       1     150 [. 0.97

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 6.6e-46
                 -EEEETTSTTTT.--HHHHHHHHHHHTS-GCC--SEEEE-.SSS-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTT CS
      DUF386   1 MIidnlenlkry.lkpklkkaleylketdlenlpeGkyeidgdklfvnvqeyetkpaeeakfEsHrkyiDiqivleGeErigyaelaekeelkeeydee 98 
                 MI+++l n +   ++++++ al+yl+ +dl+n+++G+y+ +++ ++v+v + +t pa+e+ +E+Hr +iD+q++++GeE ig+a+     +++++yd e
  EHT98401.1   1 MITGHLANTDPRhYPAAIAHALAYLAGHDLANMAAGRYQDEETGWVVQVLDLHTVPAAENYPEAHRYHIDVQYLVAGEEVIGVATQPLDLAVHQPYDSE 99 
                 9*******9997678*********************************************************************9998999999***** PP

                 TTBEEES--TTEEEEEE-TTEEEEE-TT--EEE.....B--B-EEEEEEEE CS
      DUF386  99 kDiafyaegeeessvtlkpgdfaiffPedaHrp.eaekekekvkKvVvKvk 148
                 +Di+fy++ ++e++v + pg+fa+ffP+d+Hrp +a++++ +++KvVvK++
  EHT98401.1 100 RDIVFYQHAPDETQVRMLPGTFAVFFPQDIHRPnCAVSQPGPIRKVVVKIP 150
                 **********************************9**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1116.56
//
Query:       EHT98402.1  [L=431]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-61  205.9  68.0    2.6e-53  181.2  42.6    1.6  2  MFS_1        Major Facilitator Superfamily
    0.00096   17.8   7.8    0.00096   17.8   7.8    2.8  4  MFS_2        MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2  42.6   2.9e-57   2.6e-53       1     353 []      25     386 ..      25     386 .. 0.91
   2 !   38.6  17.4   6.6e-14   5.9e-10      30     169 ..     276     417 ..     273     426 .. 0.84

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 2.9e-57
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGl 97 
                 +l++ ++s+++r ++++a+p  +  +lgis+s +gl+ +++++g++++++p+Grl+  +G  + ++ ++ll++a+ ++l  + +++   ll+lr+  G+
  EHT98402.1  25 ILITCIISYMDRVNIAFAMPGGMDAELGISASMAGLAGGIFFIGYLFLQVPGGRLAV-YGNGKrFIGWSLLAWAVISILTGM-ATSQyQLLALRFALGI 121
                 578899*************************************************77.675555************555558.555558********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 ++g+++p+++++i  wfp+ ergra++++ +++ ++ i++++l+g++++ + Wr +fy+ +++sl+++ l+ + +  +p e ++ sp+e+         
  EHT98402.1 122 AEGGMLPVVLTMIGNWFPDAERGRANAIVIMFVPIAGIITAPLSGWIITGWDWRMLFYVEGALSLVVMALWHFTISNRPQEARWISPAEKHylittlhn 220
                 ******************************************************************************************999999999 PP

       MFS_1 189 .....kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllal 281
                      kg+  ++++     + + pv+w ++l+ +++ + g++g++ +lp++l+   + + + ++g+l  l++++++++++l++ lsd +grrr  +   
  EHT98402.1 221 eqlmiKGQNVRNASL--MRVMREPVMWrLILVNFFYQT-GIYGYTLWLPTILKGLTHGN-VEQVGFLAILPYVGAIVGMFLFSVLSDATGRRRLFVALP 315
                 998886666666666..56777888**88888888886.************99999999.9*****************************988888888 PP

       MFS_1 282 lllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 l++++++++l +l  + + ++++++lv +G++   + + ++++  +l+ +e ag a gl+n +g+lgg+ gp
  EHT98402.1 316 LAGFALCMALSVLLKA-HIWWSYAALVGCGVFIQSAAGVFWSIPPRLFNAEVAGGARGLINALGNLGGFCGP 386
                 8888888888888888.99999999999***99999*********************************998 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 6.6e-14
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                 ++ ++g+l+ l ++ga+v+++++++lsd  Grrr ++ l l++fal+++l ++  +++w+ +++ v +G++  +++ +  ++  ++f+ e  g a gl+
  EHT98402.1 276 NVEQVGFLAILPYVGAIVGMFLFSVLSDATGRRRlFVALPLAGFALCMALSVLLkAHIWWSYAALVGCGVFIQSAAGVFWSIPPRLFNAEVAGGARGLI 374
                 7889******************************9999*********3333333699999999999999998888888888889999998999999999 PP

       MFS_1 127 sagfslGailgpllggllasslgWravfyilaivsllafvlfl 169
                 +a  +lG  +gp   g+l++ ++  a  y lai +++a++l++
  EHT98402.1 375 NALGNLGGFCGPYMVGILMAFYSRDAGVYSLAISLAIAALLAM 417
                 9999999999999999999999988888888888888877543 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       0.1   9.3e+02     289     313 ..      86     108 ..      51     143 .. 0.49
   2 ?    0.1   3.9     0.026   2.3e+02     260     308 ..     146     194 ..     105     218 .. 0.78
   3 !   17.8   7.8   1.1e-07   0.00096     216     343 ..     234     362 ..     211     371 .. 0.87
   4 ?   -3.6   0.2      0.33   2.9e+03      23     104 ..     395     413 ..     378     421 .. 0.44

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.1
       MFS_2 289 kntyllgalltivllvlvlllqpsn 313
                 k+ + +++l+ +v+++l+ ++  ++
  EHT98402.1  86 KRFIGWSLLAWAVISILTGMA--TS 108
                 333334444444444444444..22 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.026
       MFS_2 260 aasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvll 308
                 a +++ ++v i++++++pl  ++ + ++ + ++++  +l +v ++l  +
  EHT98402.1 146 ANAIVIMFVPIAGIITAPLSGWIITGWDWRMLFYVEGALSLVVMALWHF 194
                 4556666777788888888888888888777777766666666666554 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 1.1e-07
       MFS_2 216 qlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivl.lvlvlllqps 312
                  l +v+r++ +++l+l+ ++ +++++ +  +l   l+     n +++ +++++++++a++g++l+++l    g+++++++  l+ ++l ++l +ll ++
  EHT98402.1 234 SLMRVMREPVMWRLILVNFFYQTGIYGYTLWLPTILKGLTHgNVEQVGFLAILPYVGAIVGMFLFSVLSDATGRRRLFVALPLAGFALcMALSVLL-KA 331
                 46679999999999999999999999999999988888777799999************************************9999835566666.99 PP

       MFS_2 313 nlllflvllviagfgvgvaallpwsmladvv 343
                 +++  +++lv  g+++++aa ++ws+ + ++
  EHT98402.1 332 HIWWSYAALVGCGVFIQSAAGVFWSIPPRLF 362
                 9999999999999999999999999987765 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 0.33
       MFS_2  23 FytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwllvty 104
                 Fy+  +g+   +++                                                               l++++
  EHT98402.1 395 FYSRDAGVYSLAIS---------------------------------------------------------------LAIAA 413
                 22222222222222...............................................................22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3284.04
//
Query:       EHT98403.1  [L=493]
Description: L-xylulose kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-76  256.6   0.0    3.1e-76  256.2   0.0    1.1  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    2.1e-25   89.6   0.2    6.3e-24   84.8   0.3    2.2  2  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
  ------ inclusion threshold ------
      0.012   15.2   0.0       0.04   13.4   0.0    1.8  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.2   0.0   5.2e-80   3.1e-76       2     245 .]       4     249 ..       3     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 256.2 bits;  conditional E-value: 5.2e-80
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT- CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwkd 100
                 +lglDcG+t++ka ++d +g+ +a+a+++l++  p++g+ae+d+  +w++ a++ir+vl+ +g ++  ++++gis+q++gl+llDk+ +pL+n il++d
  EHT98403.1   4 WLGLDCGGTFIKAGLYDIQGRELAVARQNLPVVVPEPGYAERDMTLLWHQAAAVIREVLTTSGEDAASVAGMGISAQGKGLFLLDKQYRPLGNGILSSD 102
                 79************************************************************************************************* PP

                 -TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT-- CS
      FGGY_N 101 rrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgip 199
                 rr+ + v+++++eg +++ly+ t+++l+tg+++s l+W+k+++p+++++i  +++ +dyL+++Ltg+ ++++tn+ses+l++++  +w++ l+++ gip
  EHT98403.1 103 RRALSLVQQWQREGLPQQLYPLTRQTLWTGHPVSLLRWIKQHQPQRYAAIGSVMMAHDYLRFCLTGERACEETNISESNLYDMQAADWSPALAEMSGIP 201
                 *************************************************************************************************** PP

                 GG..GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 200 ee..lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 e   +LP+++ +++i+g++++ +aa+ Gl +g+pvvgg++D++++al+
  EHT98403.1 202 EIisALPPIIGPTQIAGYVTDGAAAECGLLPGTPVVGGLFDVMSTALC 249
                 *999******************************************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.016        97      31      89 ..     142     201 ..     119     217 .. 0.69
   2 !   84.8   0.3     1e-27   6.3e-24       2     195 ..     259     438 ..     258     441 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.016
      FGGY_C  31 gedgkpeyalegsiavagslvawlldnlglreeirdagev.eeslaelaaaeavadaggv 89 
                  +++++ ya+ gs+ +a++ + + l   ++ ee + ++ + +++ a+ ++ ++++ +g +
  EHT98403.1 142 KQHQPQRYAAIGSVMMAHDYLRFCLTGERACEETNISESNlYDMQAADWSPALAEMSGIP 201
                 567899****************99888755555554444435555555555555555555 PP

  == domain 2  score: 84.8 bits;  conditional E-value: 1e-27
      FGGY_C   2 kvslGTssflllvgtkpv...isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsg 97 
                 ++++GT+s+   +++ ++    + + +++ +a    +++y++  +     + ++w++d++g+    +d     ++l  ++ a++++ +  v+f+p + g
  EHT98403.1 259 NAVMGTWSVTSGITD-CIsdeADYPYVYGRYA---IEGQYLIHEASPTSAANLEWFCDQWGI----KDY----SQLN-AWVAALAPASSSVLFLPFLYG 344
                 6799****9999643.2224668999999999...789999999999999999******999....222....3444.233488888889999999888 PP

      FGGY_C  98 lrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAa 195
                   a    +d+ g+++gl++++t ah+++A++e+v ++   +l+ + +    +++ l+++GG +++  +mq++Ad+ g++Ve+p+  e+++lGaA++A 
  EHT98403.1 345 TNAS---ADLHGSFFGLQAGHTRAHLVQAIYEGVVFSHLTHLNRILQR-FPQVTALRLSGGPTRSAPWMQMFADASGLTVEVPQISESGCLGAALVAL 438
                 7776...8*************************************777.667*******************************************997 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.8e-06      0.04       1      80 [.       5      90 ..       5      93 .. 0.86
   2 ?   -1.6   0.0      0.25   1.5e+03     194     267 .]     371     437 ..     363     437 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-06
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--......TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEESTTCCCTCTT CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitns......anlesvrfeaaekvleealtealerageeeadieetylvgtgyGratlpek 80
                 +G+D G+T +ka l+d +g  l+ +  n         + + + +  +     +++e+l ++ge++a+++ + + + g G+  l+++
   EHT98403.1  5 LGLDCGGTFIKAGLYDIQGRELAVARQNLpvvvpePGYAERDMTLLWHQAAAVIREVLTTSGEDAASVAGMGISAQGKGLFLLDKQ 90
                 7***************99996766666666777776677778889999***********************999999999888765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.25
                  HHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 194 IlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  I +g++ +  + ++ + +r+ +vt  + l GG  ++++ ++++      +  + +++++ +s+  g lGAal+A
   EHT98403.1 371 IYEGVVFSHLTHLNRILQRFPQVTA-LRLSGGPTRSAPWMQMF-----ADASGLTVEVPQISE-SGCLGAALVA 437
                  5556666666677788888888876.88999999998888888.....666666777777766.6999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3854.48
//
Query:       EHT98404.1  [L=218]
Description: 3-keto-L-gulonate 6-phosphate decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-23   83.4   0.2    2.1e-23   83.1   0.2    1.0  1  OMPdecase       Orotidine 5'-phosphate decarboxylase / HUMPS 
    4.2e-05   23.4   0.0      0.061   13.1   0.0    2.3  2  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter
  ------ inclusion threshold ------
      0.078   12.9   0.0       0.13   12.3   0.0    1.4  1  GYD             GYD domain
       0.15   11.4   0.0        1.4    8.3   0.0    2.0  2  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.2   4.7e-27   2.1e-23       2     213 ..       5     195 ..       4     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 4.7e-27
                 EEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHT..SEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHH CS
   OMPdecase   2 nLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhg..flifeDrKfaDIGntvekqatagsarikewadivtvhavaGk 98 
                  L+lalD++t +++l+ a+++ p++++++ ++ l+ + g     +++++++r+++  + +++D K+aD+G t +++a      ++++a+++tv ++a  
  EHT98404.1   5 LLQLALDHTTLDAALSTARQLHPHVDIIEAGTLLCLSCG-----VEAVRHLRQQHpvKTLVADYKVADAGGTLAEMA------FAAGANWMTVICAAPL 92 
                 69*************************************.....**********9999*******************......9*************** PP

                 HHHHHHHHHHHHTTS.EEEEEESTSSGGHHHHHH..H.SHHHHHHHHHHHHHHHTTESEEECCCHTHHHHHHTTCSCEEEHHHTT.EEEEECTTCCGGG CS
   OMPdecase  99 asvkalaeaaekwgnrgllilaqmsskgnlmlqe..k.gytqacveaarehkaedfvmGfvaqetlnateedaddfihltpgigl.eqggdgkgqqynt 193
                 a+ ++++ +a++++  g ++++   +++  + ++  k g tqa++++ r+++a+    G  + ++         d+ +++   +l  + ++++g+ +++
  EHT98404.1  93 ATFASALAVAQQYQ--GDIQIELFGNWTLDDARQwrKlGLTQAIYHRGRDAQAS----GQQWNQH---------DLDTMKALSDLgFALSVTGGITPDD 176
                 *************7..******************9559**************65....6666555.........666666666666699********** PP

                 HHHHHHHTTCSEEEESHHHH CS
   OMPdecase 194 pekligiagadiiivGRgIl 213
                   ++ +i   + +i+GR++ 
  EHT98404.1 177 LSQFRDID-VKAFIAGRALS 195
                 ***99988.99******975 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00051       2.3      66     149 ..      43     130 ..      25     136 .. 0.70
   2 !   13.1   0.0   1.4e-05     0.061     125     157 ..     161     193 ..     147     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHTTTSE...EEEEESSHHHHHHHHHHT-SEEEEES--H.HHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT- CS
   QRPTase_C  66 iveavksvreavdkevk...ievevesleeleevleaeadiimLDnfsv.eelkkaveelkeknkrvlievSGgvtlenveeyaksgv 149
                  veav+++r++++ +      +v       +e + +a+a+   +    +  ++++a+ + ++ +++++ie  G+ tl++ ++ +k g+
  EHT98404.1  43 GVEAVRHLRQQHPVKTLvadYKVADAGGTLAEMAFAAGANWMTVICAAPlATFASALAVAQQYQGDIQIELFGNWTLDDARQWRKLGL 130
                 577888888887655311122222222233444555677665554444448999****99**********************999885 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.4e-05
                 STTSEEEEESS--TTTHHHHHCTT-SEEEECHH CS
   QRPTase_C 125 nkrvlievSGgvtlenveeyaksgvdvisvgal 157
                 +  ++++v Gg+t ++++++++++v+++  g +
  EHT98404.1 161 DLGFALSVTGGITPDDLSQFRDIDVKAFIAGRA 193
                 34499**********************998876 PP

>> GYD  GYD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05      0.13      10      88 ..      45     123 ..      37     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
         GYD  10 egvkgl.kdsperreeakealveslGgkleslyatlGeyDvvvivEapDdetaaalslalaasGtvrtetlrafteeefd 88 
                 e+v++l ++ p +   a  ++ +++Gg+l ++ ++ G   + vi+ ap    a al++a + +G ++ e+   +t ++++
  EHT98404.1  45 EAVRHLrQQHPVKTLVADYKV-ADAGGTLAEMAFAAGANWMTVICAAPLATFASALAVAQQYQGDIQIELFGNWTLDDAR 123
                 678888666666666666777.99****************************************9999988777777765 PP

>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.055   2.5e+02      30      58 ..      28      56 ..       6      92 .. 0.70
   2 ?    8.3   0.0   0.00031       1.4     148     197 ..     151     194 ..     140     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.055
                    EEEEEBSSSSS-B-B-HHHHHHHGGGE-S CS
  Ribul_P_3_epim 30 HvDvmDghfvpNltigplvvealrkltel 58
                    HvD+ ++  +  l+ g++ v +lr++  +
      EHT98404.1 28 HVDIIEAGTLLCLSCGVEAVRHLRQQHPV 56
                    88888888888888888888888887544 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00031
                     CHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--EEEESHHH CS
  Ribul_P_3_epim 148 evlekikkvrklidekeldlkievDGGvkldnieqiaeagadvlVagsav 197
                     + l+ +k++        l   + v GG++ d  +q  + ++++++ag+a+
      EHT98404.1 151 HDLDTMKALSD------LGFALSVTGGITPDDLSQFRDIDVKAFIAGRAL 194
                     44444444433......456699************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1742.25
//
Query:       EHT98405.1  [L=286]
Description: putative L-xylulose 5-phosphate 3-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-35  120.1   0.1    1.1e-34  119.7   0.1    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
     0.0036   16.5   0.0     0.0049   16.1   0.0    1.1  1  PRMT5_TIM     PRMT5 TIM barrel domain


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.1   1.2e-38   1.1e-34       1     210 []      24     235 ..      24     235 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1.2e-38
                   HHHHHHCT-SEEEEECCTCSHHHHC...HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHHHHHHHTBSEEEEEBCC CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvsel...sdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraielaaaLGapllvlhpGt 93 
                   la+a+++Gfd+vE++ ++ +   ++   s+e+   l +a  e+g++i+sl+l+++   p+ + ++++ r+++ d + +ai+la+++G+++++l   +
    EHT98405.1  24 LALAKACGFDFVEMSVDETDERLDRlnwSKEQRLSLVNATIETGVTIPSLCLSGHRRFPFGS-HDPAiRQRADDLIDQAIQLAKDVGIRTIQLA--G 117
                   689*******************999***********************************96.56668**************************..6 PP

                   GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.E CS
  AP_endonuc_2  94 agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHikD 190
                   ++ +++ +++ +++r+ae+l ++++ a++++v+la+E ++ ++++ + +++++  ++  sp++ v+ D+g+l ++++dv ++l    dri+++H+kD
    EHT98405.1 118 YDVYYEPHDAGTVARFAEGLSRAVQRAAAAQVMLAVEIMDTEFMNAI-SKWKAWEQQQASPWFSVYPDVGNLSAWGNDVTAELTLGIDRIAAIHLKD 213
                   8*******************************************999.************************************************* PP

                   ESS..TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 191 akg..dlgagrdrhvpigeGei 210
                   +     ++ g+ r vp+geG++
    EHT98405.1 214 TQPvtAHSPGQFRDVPFGEGCV 235
                   ***99999************96 PP

>> PRMT5_TIM  PRMT5 TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.5e-07    0.0049      60     153 ..      85     171 ..      50     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.5e-07
                 -SSHHHHHHHHHHHHHHHHHHHHHT-SEEEEE--SS........--HHHHHHHHHHHCCSSS-EEEEEEESSGGGCTT-STCTTS----SCCGHHHHHH CS
   PRMT5_TIM  60 sedeeirkdsekvLkkelayaaylglralilpgpsl......reklanyaraissalesanavtisisiplaedkeleeeeetlanalegdllstWelW 152
                 s+d++ir+++ + + + ++ a+ +g+r++ l+g  +         +a++a  +s+a++ a a ++++ +++  ++              ++ +s+W++W
  EHT98405.1  85 SHDPAIRQRADDLIDQAIQLAKDVGIRTIQLAGYDVyyephdAGTVARFAEGLSRAVQRAAAAQVMLAVEIMDTE-------------FMNAISKWKAW 170
                 99*******************************99999999999***************************9996.............33678888888 PP

                 H CS
   PRMT5_TIM 153 n 153
                 +
  EHT98405.1 171 E 171
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 2579.72
//
Query:       EHT98406.1  [L=232]
Description: L-ribulose-5-phosphate 4-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-45  153.9   1.6    5.6e-45  153.6   1.6    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   1.6   3.1e-49   5.6e-45       2     184 ..       9     197 ..       8     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 153.6 bits;  conditional E-value: 3.1e-49
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaav 99 
                  ++ +a+  l r+ lv+ t+Gn+S+ ++ ++ + i+psgv ++ +ta+d+vv++l sg+vveg +  +kpss+t++Hla+y+a++d++ +vHtHs +a+
   EHT98406.1   9 QVLAANLALPRHHLVTFTWGNVSAVDRAQGLMAIKPSGVEYDGMTADDIVVLELASGRVVEG-T--KKPSSDTATHLALYQAFEDIGGIVHTHSRHAT 103
                  6889999*****************987455555*********************99****87.3..59****************************** PP

                  HHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH........HHHHHHHHH.H.....S-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHH CS
  Aldolase_II 100 alsalagkeglppltqeaaklllgdevpvipyaapgteel........gealaealk.e.....dakavllrnHGlltvGetleeAvalaetleeaae 183
                  +++ +ag + lp+  +++a+ ++++ +p+++ ++  + e+        ge + e+++ +       +avl++ HG++++G+++++Av++a++lee a 
   EHT98406.1 104 IWA-QAG-QDLPAWGTTHAD-YFYGAIPCTRLMT--EAEIthdyehntGEVIIETFRsRgisptAIPAVLVNAHGPFAWGKDADNAVHNAVVLEEIAY 196
                  ***.776.55**********.99999***66666..355556777888999*****95489999888****************************986 PP

                  H CS
  Aldolase_II 184 i 184
                  +
   EHT98406.1 197 M 197
                  5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1909.70
//
Query:       EHT98407.1  [L=172]
Description: hypothetical protein CKS_4770 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-48  163.9   4.5    2.9e-48  163.6   4.5    1.1  1  DUF1440   Protein of unknown function (DUF1440)


Domain annotation for each model (and alignments):
>> DUF1440  Protein of unknown function (DUF1440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   4.5   1.6e-52   2.9e-48       2     135 .]      28     157 ..      27     157 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 1.6e-52
     DUF1440   2 isalvKlgaEvilPpRtperdatnPpqklldqlGipedltsatytysgqkvnwvsvlvhilfsivfavlYvvvaevfpkiklwqGalfGllvtiavHli 100
                 ++++vK+g+E+++PpRtp+r    Pp+++l+ +Gi  ++++ +y+ysg+ vnw +  vh lfsi+fa+lY+ +ae +p i+l qG++f+l++t+a+H +
  EHT98407.1  28 VASFVKWGTENPFPPRTPDRA--IPPAEMLQDMGI--NVSNLVYHYSGHVVNWGVAGVHHLFSIFFALLYCALAEIIPIITLGQGVAFALIITVAFHAV 122
                 789******************..************..9************************************************************* PP

     DUF1440 101 vlPllglvpalkelpleehvsEilghivwlwsiel 135
                 +lP+ g+ p+l++lpl+e +sE lghi+w+w+ie+
  EHT98407.1 123 ILPINGWAPPLWHLPLAEIASETLGHILWMWTIEI 157
                 *********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1259.60
//
Query:       EHT98408.1  [L=357]
Description: acyltransferase 3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-32  113.0  39.1    1.9e-32  112.7  39.1    1.0  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
      0.087   12.8   2.0       0.34   10.9   0.5    2.6  2  UspB           Universal stress protein B (UspB)


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7  39.1   2.1e-36   1.9e-32       2     338 ..       4     328 ..       3     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 2.1e-36
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHaliayspdagrgspiqasqssqiaflggfgvplFFllSGffla.amlyrrrglsklikrRilrll.iplliwllliil 95 
                     ++ +lRg+A+llVv+ H + ++    +r             + g  gv++FF++SGf ++  +       ++++++R++r++ + +++wll +++
     EHT98408.1   4 VSIQYLRGLAALLVVLAHNSSLLEGHWTRH------------IPGALGVDVFFIISGFIMTfITHQFNEAPTSFMVKRFFRIWpVFFVVWLLSFAV 87 
                    57899****************998766665............89****************9966666677789**********999********** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  96 lialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhelfgpatsvgll 191
                    + +    h  ++a  ++++    +   ++ f f a g+ W+L++++++y+++++ +++  ++r++ ++l++i+  + + ++++  +  ++ +   l
     EHT98408.1  88 VYHDRSLHDMSCALYFCLQD---YSSAGPTFGFSALGPPWTLSYEILFYAVFTVAMCINYRYRSYLCALIFIVSSVGFQLYYNGSFNFSSQVSPHL 180
                    ********************...99************************************************99999999999996555555555 PP

                    xxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 192 plpsvla..........llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfal 277
                    ++ +++           ++ f++G+lla +  +++   +   +++ll + l+++ + al +          +  + +  ++++++im+  ++l  +
     EHT98408.1 181 TVTHWWQawiklisntiCMEFILGMLLAELLVKRKLPELDNRMRRLLQAGLVLAVITALITGP--------QPFGLHGGFWLAAAIMIMTVMLSYR 268
                    5555555566******************99998876666444444444444444444444444........4566667888888888888888888 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 278 psrsafkllrylgkiSygiYliHlpllmllqkllrdwglnlgevlllvlllvvsvivsvvl 338
                    ++   ++ l++lg+iSy++YliH+pl++ll++ l d +  + +++++vl++ +sv+++ v+
     EHT98408.1 269 ADTGHNRTLIFLGDISYSLYLIHYPLMVLLMNSLADKAW-TDNLMIFVLSVSASVALASVM 328
                    88887888****************************944.479999999999999999886 PP

>> UspB  Universal stress protein B (UspB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   9.8e+02      17      40 ..       3      26 ..       1      29 [. 0.82
   2 ?   10.9   0.5   3.8e-05      0.34       3      42 ..     127     166 ..     125     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
        UspB 17 inlirylsslrallsvlreadPll 40
                i  i+yl  l all+vl +   ll
  EHT98408.1  3 IVSIQYLRGLAALLVVLAHNSSLL 26
                556889999*******99887776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.8e-05
        UspB   3 sgvalllalllvtvinlirylsslrallsvlreadPllyq 42 
                 s  +l++a+++v++    ry s l al++++      ly 
  EHT98408.1 127 SYEILFYAVFTVAMCINYRYRSYLCALIFIVSSVGFQLYY 166
                 7789*******9888889************9998887875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2982.66
//
Query:       EHT98409.1  [L=731]
Description: aerobactin siderophore receptor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-28  100.2  54.9    2.5e-28  100.2  54.9    1.7  2  TonB_dep_Rec  TonB dependent receptor
    1.8e-18   67.1   1.0    4.5e-18   65.8   1.0    1.8  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  12.3      0.01        90      36     190 ..     192     370 ..     109     377 .. 0.59
   2 !  100.2  54.9   2.7e-32   2.5e-28      12     468 ..     241     728 ..     231     729 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.01
                   E...........EEEEEEEEEECCCEECCCEEECECCEEEEE..EEEEEE....EEEEEEEEEEEEEEEEEEEEEEEEEE.......EEEEEEEE.. CS
  TonB_dep_Rec  36 r...........gylgtnplyygdnysetdnkrlrlgydydl..ddnlsw....klslraglnYsstdgdsdynnsglgg.......grsynrdn.. 106
                   +           g++++ +++  ++   +++++l+++ ++d   +   ++     ++l++ + Y + +gd+dy  ++ ++       g+ y r+   
    EHT98409.1 192 SgrlsvayqkfgGWYDGKGDSLLMD---NTQTGLQYSDRLDImgT--GTLeiddHQQLQLVTQYYKSQGDDDYGLYLGRNfsavtggGTAYIRKGln 283
                   0222222222334555555222222...33333333333332111..11122333455555556656666666666555556677665555555543 PP

                   .CEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEEEECCBEESCCTC...CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE CS
  TonB_dep_Rec 107 .dyyglgnvlaaeldlngdlwfGsnladgldyrk.lsddgydaydplnps...gdasdsvdrdsyglyaqdnikltdrltltlGlRydh 190
                    d+   + ++  +l++++++++G ++  g  y++  s  ++ ++ ++ ++   + +s+ +++d+yg  +  + k  d l+lt G+  dh
    EHT98409.1 284 sDRLPGTERHLVSLQYSNTDFLG-QELVGQVYYRdESL-AFYPFPTVSGGrvtSLSSSEQNTDQYGGKLAITSKPVDGLQLTYGVDADH 370
                   32222445555556667777877.44444556642333.333333333334658999999*****985555555569*******98876 PP

  == domain 2  score: 100.2 bits;  conditional E-value: 2.7e-32
                   EEEEEEEEEEEEEETTTTEEEEEEE.........EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE. CS
  TonB_dep_Rec  12 dnllanngdylrytdggdlgsalsr.........gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg. 98 
                    + l+  ++y++ +++ d+g+ l r         + + + +   +d   +t+++ ++l+y  +   +  +++ l  +++Y+  ++   y++    + 
    EHT98409.1 241 HQQLQLVTQYYKSQGDDDYGLYLGRnfsavtgggTAYIRKG-LNSDRLPGTERHLVSLQYSNT---D-FLGQELVGQVYYR-DESLAFYPFP---Tv 328
                   55555666666666777777666665553333224444444.444445555577777766333...2.2345666566666.4444444444...33 PP

                   .......EEEEEEEECEEE..........EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECCBEESCCTCCSEEEEEEEEEEEEEEEEEEEEET CS
  TonB_dep_Rec  99 .......grsynrdndyyg..........lgnvlaaeldlngdlwfGsnladgldyrklsddgydaydplnpsgdasdsvdrdsyglyaqdnikltd 178
                           +s  +++d+yg          +g +l++  d +++l+  s++++ +d  ++ + g+ ++ +++ +  +++++d ++++ ++q ++++++
    EHT98409.1 329 sggrvtsLSSSEQNTDQYGgklaitskpvDGLQLTYGVDADHELF--SSNQMFFDLGQSAASGGLNNQSIYTT-GRYPGYDITNLATFLQSSYDINE 422
                   436777644445555666667776656555555555555566655..44555555555444344444444445.788888***************99 PP

                   TEEEEEEEEEEEETTCSSSS.....................EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEE.....CCC.. CS
  TonB_dep_Rec 179 rltltlGlRydhysvfgkdlrag..................afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggs.....nga.. 250
                    +tl++G+Ry++++ + +d+++                   + s+++++f++++g+  ++t   +  +++s+g   P+ g +y++g+     ng+  
    EHT98409.1 423 TFTLSGGVRYQYTENKVDDFVGYaqqqaiangtarsadpipGGSTDYDNFLYNAGILMHITARQQAWFNFSQGVELPDPGKYYGRGTygravNGNlp 519
                   ****************9999999999999888888888999888889**********999*9999999****************9887776633333 PP

                   .CCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEEE.EEEEEESSSSCSTTTCSEEEEEE.EEEEEEEEEEEEEEE.EETTEEEEEEEEE CS
  TonB_dep_Rec 251 .ggalsngnpdLkPEtsknyelGlkldddrlnltlayFridik.nfittdpdgpslgglgdfqyqNv.gkarikGvElelsyr.ltpgWglglsggg 343
                    +++++  + +L+  +++++elG+++++d+l+ +l+++++  + n++++++          ++ + v +k ri+GvE +++y+  + +W++g++++ 
    EHT98409.1 520 lTNSVNVDASKLQGIKVDSWELGWRYTGDNLRTQLSAYYSLSDkNVQQNQDL---------TI-SVVdDKRRIYGVEGAVDYFiPDTDWSTGANFN- 605
                   444444445889***********************66666555277777775.........44.4447888************99999**655555. PP

                   EEEEEECECEEECTTTTSSTTEESEEEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSEEEEEEEESTT CS
  TonB_dep_Rec 344 ytYydagddsdaddggnplpnvPkhtanlgltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklpknltlslgvnNLf 440
                      ++++ + d+++  +++  +++ +a++++ +    ++W++++ ++ ++++       +d+a+    + gYt++d+  +Y lp + +ls++v+NL+
    EHT98409.1 606 --VLKTESKVDGSWRKYDVKVASPSKATAYVGW--SPDPWSLKV-QSTTSFN------LSDDAGY--NINGYTTVDFIGSYELPVG-KLSFSVENLL 688
                   ..444444455666666666678888888889*..7788**444.2223332......2233333..889***********99955.********** PP

                   ETCSCEEESTT............TTTCCEB--SEEEEEEE CS
  TonB_dep_Rec 441 dkryyassgyy............glggypgpgRtfrlglr 468
                   d+ y+++ g+             +l+ y g gRtf l+++
    EHT98409.1 689 DRDYTTVWGQRaplyysptygspSLYQYKGRGRTFGLNYS 728
                   *543333333355555566678889999999999998876 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   1.0   5.1e-22   4.5e-18       3     107 ..      44     145 ..      42     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 5.1e-22
                 GCCSSEEEEEEHHHHHHT..TTSSHHHHHTT.STTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHC CS
        Plug   3 kdtpgsvsvvtaediekq..gatsladalqg.vpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasa 98 
                  + ++++ v+  +++e+q  g + ++dal++ vpg++  +s++g ++ ++++RG    ++ vlvDGv++++++ ++++l+sidp +i+ iev++ ++++
  EHT98409.1  44 AEMAQTTWVIEGAELEQQvqGGKEFKDALAQlVPGLD--VSSQGRTNYGMNMRGR---AIVVLVDGVRLNSSRTDSRQLDSIDPFNIDHIEVIS-GSTS 136
                 5788999***********988****************..79*************9...9***********************************.7777 PP

                 TTSSTGSSE CS
        Plug  99 lyGsdaigG 107
                 lyG++++gG
  EHT98409.1 137 LYGGGSTGG 145
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5529.43
//
Query:       EHT98410.1  [L=444]
Description: IucD family aerobactin siderophore biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.6e-112  373.8   0.0   9.5e-112  373.5   0.0    1.1  1  K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
    3.3e-11   43.0   0.0      5e-09   35.8   0.0    2.1  2  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
    5.4e-05   21.8   0.0     0.0046   15.4   0.0    2.1  2  FMO-like     Flavin-binding monooxygenase-like
    0.00018   20.9   0.0       0.47    9.6   0.0    2.3  2  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.5   0.0  2.1e-115  9.5e-112       2     341 ..       4     333 ..       3     334 .. 0.96

  Alignments for each domain:
  == domain 1  score: 373.5 bits;  conditional E-value: 2.1e-115
  K_oxygenase   2 ilDligiGiGpsnLsLailleevkkelkalflerqpefaWhpgmllegaelqisfLkDlvtlrdPtspfsFlnYlkekgrLykFlnletflpsRkefe 99 
                  ++D+igiGiGp+nLs+a+l++e++  +++ fl+ +p+faWhpgml++++++q+sfLkDlv+++ PtspfsF+nYl++ +++y+F+++e  ++sR+ef+
   EHT98410.1   4 TVDFIGIGIGPFNLSIAALAHEAE-GFTSAFLDSRPDFAWHPGMLVPDCHMQTSFLKDLVSAVAPTSPFSFVNYLVKCKKFYRFMTAELRTVSRDEFS 100
                  68**********************.************************************************************************* PP

  K_oxygenase 100 dYlrWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVv 197
                  dYlrW+a+ +++ ++f+++ve++e+d+ +  +++ ++s     +  e++arn++lg+G++p++P+++++++  ++++H+se+  rk  +l++kr+aV+
   EHT98410.1 101 DYLRWAAEGMDN-LHFNHTVERIEFDDTK--QRFVIHS-----HDGERYARNICLGIGKQPYLPPCVNRIS--ATCFHASEMSLRK-PDLRGKRVAVI 187
                  ************.**************87..5799998.....45789*********************98..8***********9.599******** PP

  K_oxygenase 198 GsGqSaaeifedllrr..qkkvelklvtrsealeplddspfvneifsPeyvdyfyslpeekreallkeqkatnykgvdaelieelyeelyeq.kvkge 292
                  G+GqS+a++f ++ r    + +++++v+r++++++ld++ f+ne+f+Peyv++f+ l+e++r+++l+eqk ++++g++a+ + ++y+ely++ +v g+
   EHT98410.1 188 GGGQSGADLFLNAFRGewGEPANVSWVSRRNNFNALDEAAFANEYFTPEYVSSFVGLSEKARQTMLDEQK-MTSDGITAASLLTIYRELYHRfEVLGQ 284
                  ***************976667************************************************8.79******************9999999 PP

  K_oxygenase 293 er.lrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGYr 341
                  +r ++llp+r+v +++++++  ++l+l+++ ++  + +e+d+v++ATGYr
   EHT98410.1 285 PRnAHLLPSRSVVELNRHQQ-CWQLQLQHQLDQGYDLIECDVVIFATGYR 333
                  966***************95.****************************8 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.1e-12     5e-09      72     201 ..      88     222 ..      61     261 .. 0.81
   2 !    5.1   0.0    0.0025        11     247     275 ..     312     340 ..     251     358 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.1e-12
  Pyr_redox_3  72 slkeeklsrkealeYlrevaksfelpiklfeeVesvkk..edegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvk.efhkyagq 165
                  + + + +sr+e+ +Ylr  a+  + + + +++Ve+++   +++ f++++  ++  A+++ + +G+  +P+++      + ++ h s+++    +++g+
   EHT98410.1  88 TAELRTVSRDEFSDYLRWAAEGMD-NLHFNHTVERIEFddTKQRFVIHSHDGERYARNICLGIGK--QPYLPPCVNRISaTCFHASEMSlRKPDLRGK 182
                  44556899*********9999877.68*********99434577********************9..899887554443389999999865569**** PP

  Pyr_redox_3 166 kvvViGgknSavDaAlelvrk....gaeVtvvtrgseiek 201
                  +v+ViGg+ S++D  l+ +r      a+V++v r+++ ++
   EHT98410.1 183 RVAVIGGGQSGADLFLNAFRGewgePANVSWVSRRNNFNA 222
                  ****************998864433588888888887665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0025
  Pyr_redox_3 247 vktedgkkvevkddvvlatGykpdlsflk 275
                   + ++g  + + d v++atGy+p l  l 
   EHT98410.1 312 HQLDQGYDLIECDVVIFATGYRPALPELL 340
                  34667888888999*********986554 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-06    0.0046      84     200 ..      97     198 ..      77     218 .. 0.78
   2 !    4.3   0.0    0.0024        11     320     342 ..     322     344 ..     311     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-06
    FMO-like  84 sklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekfkGqyfhsrdy..kepev 180
                 +++ +yl+  a+ +d l    f+ tv  +    +f  + q  v+  ++g +      a  +c G   +p+lp    p +++    +fh+ +   ++p+ 
  EHT98410.1  97 DEFSDYLRWAAEGMDNL---HFNHTVERI----EFDDTKQRFVIHSHDGERY-----ARNICLGIGKQPYLP----PCVNRISATCFHASEMslRKPD- 178
                 56666776666666655...355555443....5777777778888877764.....5679**********9....9***********9886225676. PP

    FMO-like 181 fkgkrvlviGlGnsggdiav 200
                 ++gkrv viG G sg+d+  
  EHT98410.1 179 LRGKRVAVIGGGQSGADLFL 198
                 79***************965 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0024
    FMO-like 320 didvvifatGytfafpfleeslv 342
                 + dvvifatGy  a p l  +l+
  EHT98410.1 322 ECDVVIFATGYRPALPELLSPLM 344
                 68**********99998877765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0001      0.47      67     157 ..     113     196 ..     106     232 .. 0.70
   2 !    7.8   0.0   0.00039       1.7     204     242 ..     294     337 ..     286     377 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0001
                  CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2  67 ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvEl 157
                  +++ +++e +++d  k+++++      d+e+  + ++ l +G +p ++++      +++     +s   l++  l+ kr++v+GgG  G +l
   EHT98410.1 113 LHFNHTVERIEFDDTKQRFVIHS---HDGER-YARNICLGIGKQPYLPPCVNRISATCF----HASEMSLRKPDLRgKRVAVIGGGQSGADL 196
                  55666777888888888888843...33433.568999999999999977766233333....34555555555557*********999876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00039
                  CEEEEEEETTE....EEE.EEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 204 tsvkeidgnge....kle.vvledgeeidadlvvvavGvrpste 242
                   sv+e++++++    +l+   ++  + i++d v++a+G+rp  +
   EHT98410.1 294 RSVVELNRHQQcwqlQLQhQLDQGYDLIECDVVIFATGYRPALP 337
                  45666776666674444433333444488888888888888644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3522.65
//
Query:       EHT98411.1  [L=577]
Description: IucC family aerobactin siderophore biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-68  231.1   0.1    2.2e-68  230.4   0.1    1.3  1  IucA_IucC  IucA / IucC family
    1.4e-32  113.3   1.9    1.7e-32  113.1   0.4    1.9  2  FhuF       Ferric iron reductase FhuF-like transporter


Domain annotation for each model (and alignments):
>> IucA_IucC  IucA / IucC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.1   2.4e-72   2.2e-68       7     238 ..     130     372 ..     125     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 230.4 bits;  conditional E-value: 2.4e-72
                 HH-----SS-S-S---BT--HHHHHHH-GGG---B--EEEEEETTTEEESTT-HHH...HHHHHH-HHHHHHHHHHHCTT--GGGEEEEEE-HHHHHHT CS
   IucA_IucC   7 qllleGHpfhpaaKsRlgfseedaaaysPEfaasfrlrwvavhrelvtfssaeeeraqellaaeldpstraafaaelksgldpedyvllpvHPwQwehl 105
                 q ll GHp ++++K+R+g++ + +a+y+PE  ++frl+w+av+re+++ ++  + + q+ll+a++d+ ++a+f+++ +++  ++++++lpvHPwQw++ 
  EHT98411.1 130 QCLLSGHPKFVFNKGRRGWGLAALARYAPEYLNTFRLHWLAVQREHLVWRCDSALDIQQLLHAAMDDGEYARFTEAWQAQGLDDSWLPLPVHPWQWQQK 228
                 5688***********************************************99999999******************9666679*************** PP

                 HHHHSHHHHHTTSEEEEEE-SS-EEE-TTSSEEEESS-TT.-EEEE-EEEEETTEEE---HHHHHHHHHHHHHHHHHHHT-HHHHC.--EE--EEEEEE CS
   IucA_IucC 106 iaplfaaeiakgrlvdlgesgdeylPtqSvRTlvnidrpa.phvKlsLsvritnsvRglspaeleaGpavsrlleellaadaflre.rfkllrEvagia 202
                 ia  f a++a+g++v lge gd++l++qS+RTl n++r+  + +Kl+L++ +t+++Rg++ ++++aGp +sr+l++++a da+l++ + ++l+E+a+ +
  EHT98411.1 229 IALDFVADLATGKMVSLGEFGDRWLAQQSLRTLTNASRQGgLDIKLPLTIYNTSCYRGIPGKYIAAGPLASRWLQHVFATDATLQQsGAVILGEPAAGY 327
                 *************************************************************************************************** PP

                 E-......-........T-SEEEEE--CCCT-T..-EEEEGGGGG CS
   IucA_IucC 203 vthpayeel........ellgvlwRenpesllg.deravplaaLl 238
                 v+h+ y +l        e+lgv+wRenp++ l  de+++++a+L+
  EHT98411.1 328 VAHQGYAALaeapyryqEMLGVIWRENPARWLHqDETPILMATLM 372
                 ****7777778889999************9**669********98 PP

>> FhuF  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.96   8.6e+03      16      52 ..     298     332 ..     292     361 .. 0.64
   2 !  113.1   0.4   1.9e-36   1.7e-32       1     160 [.     394     553 ..     394     556 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.96
                 HHHHHHH-EE---STTTEEEEEETTEEEEEEE---.. CS
        FhuF  16 lhllleygialeahlqNvllvlddgrpvrlllrdfeg 52 
                     l++  a +a lq++  v+  g p++ ++ ++ g
  EHT98411.1 298 ASRWLQHVFATDATLQQSGAVIL-GEPAAGYVAHQ-G 332
                 55556666677777777766665.77777777666.3 PP

  == domain 2  score: 113.1 bits;  conditional E-value: 1.9e-36
                 HHHHHHHHHHHHHHHHHHHHHH-EE---STTTEEEEEETTEEEEEEE---....TTT-EES-TT----TTSGGGB----GGGS.HHHHIIIIIIIHHHH CS
        FhuF   1 slWlkrYfglllpPllhllleygialeahlqNvllvlddgrpvrlllrdf.egvslkaellpelpalpeevkrlltddpeelr.eevfyglfvnhlapl 97 
                 ++Wl++ f++++ Pl+hll++yg+al ah+qN++l ++d  p+r+ll+df ++++l   ++pe ++lp++v+ + ++  ++   + +++g+fv++++++
  EHT98411.1 394 EAWLSQMFRVVVVPLYHLLCRYGVALIAHGQNITLAMKDSIPQRVLLKDFqGDMRLVKDDFPEMASLPQAVRDVTARLSADYLiHDLQTGHFVTVVRFI 492
                 58************************************************8888**************9999999999999999*************** PP

                 HHHHHHTTSS-HHHHHHHHHHHHHHHHHHSGGGHHHHHHT-TT-SEE-.---HHHHHH-XXXX CS
        FhuF  98 iealaaagglsekllWsnvaellewylaelpelaerfaqalLfaptlpgkanllrvrladeae 160
                 ++++ a+ g++e+++++ +a++l +y + +p+l++rfa + Lf+p++  +  l++v+l+  ++
  EHT98411.1 493 SPLM-ARLGVPERRFYQLLAAVLSDYMQAHPQLSARFALFSLFKPQII-RVVLNPVKLTWPDQ 553
                 ****.6667***************************************.99999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4157.84
//
Query:       EHT98412.1  [L=315]
Description: IucB family aerobactin siderophore biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-51  174.4   0.4    2.1e-51  173.4   0.3    1.6  2  Acetyltransf_8  Acetyltransferase (GNAT) domain
     0.0006   20.5   0.0     0.0011   19.6   0.0    1.4  1  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.89     8e+03      98     118 ..      42      63 ..      39      64 .. 0.78
   2 !  173.4   0.3   2.4e-55   2.1e-51       1     145 []     149     294 ..     149     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.89
                     HHHHHHHHHHHH.CCTT--EEE CS
  Acetyltransf_8  98 tallralvhylf.adprtrrvv 118
                       +lr  ++++f a p  + +v
      EHT98412.1  42 EGWLRDALDQMFiAAPSLSAIV 63 
                     6799999999997788888877 PP

  == domain 2  score: 173.4 bits;  conditional E-value: 2.4e-55
                     -.GGGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTT CS
  Acetyltransf_8   1 dpeaDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkg 95 
                     dp++D+e++ rWmn+prv ++we++g+l+ + ++l++  ++ + +plig++d+ p++yfeiYwa+ed+++++y  +p+drG+Hll+ge + rg++
      EHT98412.1 149 DPARDAEMFTRWMNDPRVDYFWEQSGSLAVQTAYLQRQLTSSYAFPLIGCFDDAPFSYFEIYWAAEDRIGRHYSWQPYDRGLHLLVGESQWRGPH 243
                     789*************************888888886667******************************************************* PP

                     CHHHHHHHHHHHHHC.CTT--EEEE--BTT-HHHHHHHHHTT-EEEEEEEE CS
  Acetyltransf_8  96 lttallralvhylfa.dprtrrvvvEPdvrNerairllekaGfekekevdl 145
                     +++++lr + hylf+ +p+t+r v+EP+++N+r+ r+l+ aG++ +ke+d+
      EHT98412.1 244 YVQSWLRGISHYLFLdNPHTQRLVLEPRADNQRLFRHLAPAGYATVKEFDF 294
                     **************7356*******************************97 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-07    0.0011       9     133 ..     150     282 ..     143     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.2e-07
  Acetyltransf_3   9 ee.Dlealfelrsdpevmrylpepltleeaeewlera........waeeseeegyg.waivlkdtgviGsv.glrdleeedeeaelgymlaps.f 91 
                     ++ D+e + ++++dp+v  +  ++ +l+ ++++l+r         +  + ++  +  + i   +++ iG   + ++++       l +++++s +
      EHT98412.1 150 PArDAEMFTRWMNDPRVDYFWEQSGSLAVQTAYLQRQltssyafpLIGCFDDAPFSyFEIYWAAEDRIGRHySWQPYD-----RGLHLLVGESqW 239
                     4449777779********778889999999999997766666766555555555555777676666899983333333.....3599****9956 PP

  Acetyltransf_3  92 wgkGyateavralleyaf.eelglerlvavidkeNeaSirvle 133
                     +g  y +  +r++ +y+f ++++++rlv +  ++N++ +r l 
      EHT98412.1 240 RGPHYVQSWLRGISHYLFlDNPHTQRLVLEPRADNQRLFRHLA 282
                     677**************99999**************9888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2224.23
//
Query:       EHT98413.1  [L=574]
Description: IucA family aerobactin siderophore biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-52  178.9   2.1    2.1e-52  178.1   2.1    1.4  1  IucA_IucC  IucA / IucC family
    3.2e-28   99.2   1.3    3.2e-28   99.2   1.3    2.4  3  FhuF       Ferric iron reductase FhuF-like transporter


Domain annotation for each model (and alignments):
>> IucA_IucC  IucA / IucC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1   2.1   2.3e-56   2.1e-52       2     236 ..     136     364 ..     135     367 .. 0.87

  Alignments for each domain:
  == domain 1  score: 178.1 bits;  conditional E-value: 2.3e-56
                 HHHHHHH-----SS-S-S---BT--HHHHHHH-GGG---B--EEEEEETTTEEESTT-.HHH...HHHHHH-HHHHHHHHHHH..C.TT--GGGEEEEE CS
   IucA_IucC   2 flalEqllleGHpfhpaaKsRlgfseedaaaysPEfaasfrlrwvavhrelvtfssae.eeraqellaaeldpstraafaael..k.sgldpedyvllp 96 
                 f+++Eq+ll GH fhpa+Ks + f++++a++y P+fa +f+lrw+av++++++ +s + +      l+++l     ++faae   +   +  ++  l+p
  EHT98413.1 136 FAEAEQALLVGHAFHPAPKSHEPFTPQQARRYLPDFAPHFPLRWFAVDKDYLAGDSLKlN------LQQRL-----TRFAAENapQlLHALTDQRWLFP 223
                 89****************************************************888841......44444.....12222221122355678999*** PP

                 E-HHHHHHTHH.HHSHHHHHTTSEEEEEE-SS-EEE-TTSSEEEESS-TT-EEEE-EEEEETTEEE---HHHHHHHHHHHHHHHHHHHT-HHHHC.--E CS
   IucA_IucC  97 vHPwQwehlia.plfaaeiakgrlvdlgesgdeylPtqSvRTlvnidrpaphvKlsLsvritnsvRglspaeleaGpavsrlleellaadaflre.rfk 193
                 +HPwQ+++l++ +  ++++++grl dlge+g ++lPt S R+l+ +++++ ++K+sLsvr+tnsvR+ls +e+++G++++rl ++ + ++ ++r+  f+
  EHT98413.1 224 LHPWQADYLLQqSWCQQLMEQGRLQDLGEAGTSWLPTTSSRSLYCATSRD-MIKFSLSVRLTNSVRTLSVKEIKRGMRLARLAQTARWQAMQARFpTFR 321
                 ***********9**************************************.************************************************ PP

                 E--EEEEEEE-......-T-SEEEEE--C..CCT-T..-EEEEGGG CS
   IucA_IucC 194 llrEvagiavthpayeelellgvlwRenp..esllg.deravplaa 236
                 +++E  ++++++ +++  e+    +Ren+  +   + + +  +l +
  EHT98413.1 322 VMQEDGWAGLRDMQGTIREESLFALRENLivD---QpQSQTNVLVS 364
                 *************97767999999***99421...22355555555 PP

>> FhuF  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.59   5.3e+03     128     145 ..     209     228 ..     194     250 .. 0.52
   2 ?   -2.9   0.0      0.86   7.7e+03      46      67 ..     330     351 ..     319     392 .. 0.58
   3 !   99.2   1.3   3.6e-32   3.2e-28       2     162 ..     398     554 ..     397     555 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.59
                 GGGHHHHH.HT-TT.-SEE- CS
        FhuF 128 pelaerfa.qalLf.aptlp 145
                 p+l  +++ q++Lf   +++
  EHT98413.1 209 PQLLHALTdQRWLFpLHPWQ 228
                 33333333444444333333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.86
                 EE---...TTT-EES-TT---- CS
        FhuF  46 llrdfegvslkaellpelpalp 67 
                  lrd++g+ ++++l+++ + l 
  EHT98413.1 330 GLRDMQGTIREESLFALRENLI 351
                 5677766644444443333332 PP

  == domain 3  score: 99.2 bits;  conditional E-value: 3.6e-32
                 HHHHHHHHHHHHHHHHHHHHH-EE---STTTEEEEEETTEEEEEEE---...TTT-EES-TT----TTSGGGB----GGGSHHHHIIIIIIIHHHHHHH CS
        FhuF   2 lWlkrYfglllpPllhllleygialeahlqNvllvlddgrpvrlllrdfegvslkaellpelpalpeevkrlltddpeelreevfyglfvnhlapliea 100
                 +W+++Y++++l Pl+ + ++yg++l ah+qN+l+++ + +pv+l++rd++g +++++++ +l++  e++++ +  +++ lr ++ y+l+vn  +++ +a
  EHT98413.1 398 AWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVEMAQDLPVGLIYRDCQGSAFMPHAAGWLDETGEAQAENVFSREQLLR-YFPYYLLVNSTFAVTAA 495
                 8*****************************************************************999999999999999.***************** PP

                 HHHTTSS-HHHHHHHHHHHHHHHHHHSGGGHHHHHHT-TT-SEE-.---HHHHHH-XXXXXX CS
        FhuF 101 laaagglsekllWsnvaellewylaelpelaerfaqalLfaptlpgkanllrvrladeaeas 162
                 l+aag  se++l+++v+++l ++  e+   + ++ +++L++p++  k n++ + l+d++e++
  EHT98413.1 496 LGAAGMDSETHLMARVRDALSALRCEV--THTDCLDYVLESPHWNVKGNFF-CYLHDHNENT 554
                 ***************************..6666778***************.*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4361.39
//
Query:       EHT98414.1  [L=401]
Description: hypothetical protein CKS_4777 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-16   58.2  64.6    1.3e-13   50.7  25.0    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        4.8    7.1   9.2        3.2    7.7   2.0    2.9  2  YrhK      YrhK-like protein
        6.9    5.1  31.6       0.55    8.7  10.4    3.0  3  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7  25.0   2.1e-17   1.3e-13       1     174 [.      19     199 ..      19     223 .. 0.82
   2 !   13.5  31.8   4.3e-06     0.025       4     177 ..     225     396 ..     222     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.1e-17
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf........a....sslwl 87 
                 l+++a l + + + l++a+p  l  +  +s s+   lltl + +++ as+ +G  + r G+++v+l++l++++ ++lll +        a    ++l +
  EHT98414.1  19 LAISAGLLGVGQNGLLVAIP-VLVAQTSLSLSVWAGLLTLGSMLFLPASPWWGKQIARQGSKPVVLWSLAGYGTSFLLLGLgcallsvqAvsapIGLGI 116
                 578899999***********.88888788888866689999999*******************************555555444455441565677889 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpe 174
                 l+++rv+ Gl+ +a++pa+++++ + + +e+r+ a++ +s+g s+G ++gpl ++ ++  +   +++ +++a++++la++l     p 
  EHT98414.1 117 LIIARVFYGLMVSAMVPACQVWALHRAGEEKRMTALATISSGLSCGRLFGPLCAAGMLvIHPLAPLALLVVAPLLALALLL-----PL 199
                 **************************************************9988877747777999999999999999663.....22 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.3e-06
       MFS_1   4 aaflsalarsilgpalplalaedlg....ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 +a+l a++ s+  + l++ala+++     +  +++ +ll++ a++++ a++++ +  + + + ++l+ + +l+alg l +++++slwl++v+ +++++g
  EHT98414.1 225 CALLLAATVSLMQLGLSPALARQFAgqtaAISHQVAWLLSVAAIASLSAQFLVLHP-QLLTPLSLLISAGILMALG-LGMMLTTSLWLFYVGCAVMSFG 321
                 44444444444333333366666664444666679****************99777.678899*************.555555999************* PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                 a++++pa + l+ d  ++   g + g+++++  lG+ l +ll +++++s g +a+ +++a+ ++++f+    l++++++
  EHT98414.1 322 AALGTPAYQLLLNDTLAD---GAGAGWIATSHTLGYGLCALLVPVITHSHG-EAALIAAALTAAMLFIALSGLIWRSRS 396
                 *****************9...**************************6665.899999999999999977788887765 PP

>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.0   0.00054       3.2      15      39 ..      52      91 ..      45     112 .. 0.69
   2 ?    2.4   0.8     0.024   1.4e+02      37      53 ..     306     322 ..     296     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00054
        YrhK 15 sllFlvGSilflpnsefw...............kwqiagv 39
                ++l ++GS lflp s++w               +++ +g+
  EHT98414.1 52 AGLLTLGSMLFLPASPWWgkqiarqgskpvvlwSLAGYGT 91
                67889**********9886666666666666555555555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.024
        YrhK  37 agvwlFliGSilflirp 53 
                    wlF +G++ +  ++
  EHT98414.1 306 TSLWLFYVGCAVMSFGA 322
                 568*******9997766 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.8   0.00036       2.2     257     382 ..      44     175 ..       9     188 .. 0.76
   2 ?    8.7  10.4   9.2e-05      0.55     229     345 ..     223     339 ..     214     342 .. 0.85
   3 ?   -0.1   0.7     0.044   2.6e+02     139     179 ..     346     386 ..     342     397 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00036
       MFS_2 257 ngsaasvfllvvtisallgiplwqplakrlg...kkntyllgalltivllvlvlll.........qpsnlllflvllviagfgvgvaallpwsmladvv 343
                 +    sv+++++t++++l++p  ++  k +     k ++l++++ +   ++l   l         q+ +  + l +l+ia ++    +l++ +m++ + 
  EHT98414.1  44 TSLSLSVWAGLLTLGSMLFLPASPWWGKQIArqgSKPVVLWSLAGYGTSFLL---LglgcallsvQAVSAPIGLGILIIARVF---YGLMVSAMVPACQ 136
                 5667899*************99999999886332667777776544333322...1222444466666777777777777777...5556678999999 PP

       MFS_2 344 DygelktGkrregvffavlsfisklatgiglgvsgllLs 382
                      + G+ ++ ++ a+ s    ++  +g + ++++L 
  EHT98414.1 137 VWALHRAGEEKRMTALATISSGLSCGRLFGPLCAAGMLV 175
                 999999999999999999999999999999998888876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 9.2e-05
       MFS_2 229 llllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlg..kkntyllgalltivllvlvlllqpsnlllflvllviag 325
                 ll++ llaa+  +++ gl+   ++ + g+ +a+s + + +   a+++++ +q l+ +       + l++a ++++l+++++l   ++l+lf+v +++ +
  EHT98414.1 223 LLCALLLAATVSLMQLGLSPALARQFAGQTAAISHQVAWLLSVAAIASLSAQFLVLHPQllTPLSLLISAGILMALGLGMMLT--TSLWLFYVGCAVMS 319
                 899999*****************************999998888888888887776655227778888888888888888777..************** PP

       MFS_2 326 fgvgvaallpwsmladvvDy 345
                 fg+++ + +   +l d+  +
  EHT98414.1 320 FGAALGTPAYQLLLNDTLAD 339
                 *****999999999998766 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.044
       MFS_2 139 rsflsvlggvlaailafllvlilgglkserkgylifaliia 179
                   ++ +lg  l+a+l++++    g++++ + + ++++l+ia
  EHT98414.1 346 IATSHTLGYGLCALLVPVITHSHGEAALIAAALTAAMLFIA 386
                 55677788888888888876666662222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2980.78
//
Query:       EHT98415.1  [L=296]
Description: hypothetical protein CKS_4778 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-37  127.2   0.0    5.6e-37  126.6   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain
    1.1e-34  119.5   0.4    2.4e-34  118.4   0.4    1.6  1  SIP            Siderophore-interacting protein


Domain annotation for each model (and alignments):
>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   6.3e-41   5.6e-37       2     120 ..      14     130 ..      13     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 6.3e-41
  FAD_binding_9   2 vvrverlspslrrvtltgeelagfksdgtDqhikLllpepgqtepelppelteeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgdeg 97 
                    ++r+++lsps+  ++++g+++a++ksd++Dq+ik+llp +++  p+lp +  +e++q+  +lp+++rp++RtYt+r+ld ++eel+i+fv Hg+eg
     EHT98415.1  14 LARKHHLSPSMLSLVFNGPDVAQMKSDAPDQRIKILLPAEDGSLPDLPNN--DEWYQTILSLPKAQRPLLRTYTLRHLDVQREELTIEFVSHGTEG 107
                    5799*****************************************99666..******************************************** PP

  FAD_binding_9  98 paarwAaqAqpGdelaivgPgga 120
                    pa++wA +A+pGd l iv+P++a
     EHT98415.1 108 PASAWAINAKPGDSLVIVAPNAA 130
                    ********************976 PP

>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.4   2.7e-38   2.4e-34       2     118 ..     147     292 ..     146     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 2.7e-38
         SIP   2 dwvllagDeTAlPAiaaiLeel...padaqvravievpdaadelelsapaaveltwlvrega.aaagelLaealrelel.................... 76 
                 ++ ll++DeTAlPA+++iLe+l   p+ ++v+a++evpda+d+ +l+a a +++ wl+r+ a a++ge L++a+++                       
  EHT98415.1 147 RNALLIADETALPAAKGILESLarqPHPPRVQAFFEVPDAEDCVDLQAYAFADIVWLPRKPAfASHGECLIAAIQSQVSvpdggqqqavqeeedgellw 245
                 578*********************9**************************************************999977777777777766666665 PP

         SIP  77 .....pagelyvwvagEaavvkalRrhlvkergldrkqvaamgYWrr 118
                       ++e+y wva+E++vvk lRrhl+ erg+dr+++++m+YW +
  EHT98415.1 246 draqaRNNEFYGWVAAESTVVKLLRRHLIGERGVDREAINFMAYWAK 292
                 55544477*************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2356.55
//
Query:       EHT98416.1  [L=92]
Description: glutathione-dependent formaldehyde-activating enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00022   21.5   0.0    0.00028   21.2   0.0    1.2  1  GFA       Glutathione-dependent formaldehyde-activating enzym


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.6e-08   0.00028      44      83 ..      13      51 ..       3      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-08
         GFA 44 gnkvtrsfCpeCgsplyseesaapevvivrvGtlddpekl 83
                 ++ ++ fC++Cgs++     ++  ++++++G+ldd  +l
  EHT98416.1 13 PQGYRNDFCRNCGSTVPN-DLRDRPLIWLPIGLLDDDLDL 51
                6778899**********6.777777**********97554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 834.41
//
Query:       EHT98417.1  [L=69]
Description: putative LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0072   15.7   0.1     0.0074   15.7   0.1    1.0  1  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.1e-07    0.0074     149     207 ..       3      63 ..       1      65 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.1e-07
                     TS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC.CHHHHHHHHHHHHHH CS
  LysR_substrate 149 GlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre.lspavrafidflrea 207
                      +G +++p+  +r+ela+g l++lpl++   +  +l+l+ +k+   l+p +++++d+l++a
      EHT98417.1   3 QVGYGWIPQARIRHELAQGILKILPLRHGVRRaTTLHLLIKKDIImLDPPIATLLDLLKTA 63 
                     689*************************777788999999999754689999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 643.53
//
Query:       EHT98418.1  [L=213]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-14   53.8   0.0    2.7e-14   52.8   0.0    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    9.4e-13   48.0   0.5    1.6e-12   47.3   0.5    1.3  1  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0     3e-18   2.7e-14       1      60 []       6      65 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 3e-18
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+q  l+++v++egsf++AA+  + sq++vs  ++ L +++g +L++  gr+++LT+aGe
  EHT98418.1  6 LEQWSLLDKVMKEGSFAKAADLTNRSQSSVSYNLAMLQQRIGITLLHIEGRKAVLTPAGE 65
                68999******************************************************7 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.5   1.8e-16   1.6e-12       2     111 ..      90     195 ..      89     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.8e-16
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     +g r +L + + + + r++l  +l+ f++r+P+ +++l+e      +   +  e+D+ +++++++ +g + + L++  +v+va++dhpL++ g  
      EHT98418.1  90 SGVRTKLDLVVDSIFPRRRLFAVLKTFQQRHPHTQINLTEVL----ETDTDYAEADVMVVTQRQDMAG-RGEWLMNVDFVAVAHRDHPLHQcGVD 179
                     57889999*******************************888....555667889*************.************************** PP

                     ECGGGGCTSEEEEEST CS
  LysR_substrate  96 vsledLadeplillee 111
                     ++ e+La++pli   +
      EHT98418.1 180 LDEEQLARYPLIRIAD 195
                     ************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1728.50
//
Query:       EHT98419.1  [L=168]
Description: phenolic acid decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-84  278.7   0.5    1.1e-83  278.6   0.5    1.0  1  PA_decarbox  Phenolic acid decarboxylase (PAD)
    0.00033   20.5   0.1    0.00048   20.0   0.1    1.2  1  MoaF         MoaF N-terminal domain


Domain annotation for each model (and alignments):
>> PA_decarbox  Phenolic acid decarboxylase (PAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.6   0.5   1.2e-87   1.1e-83       1     157 [.       9     165 ..       9     166 .. 0.99

  Alignments for each domain:
  == domain 1  score: 278.6 bits;  conditional E-value: 1.2e-87
  PA_decarbox   1 lsefvGkhliytydnGweyelyvknektidyrihsGlvggrwvkdqeveivrlaedvykvswtePtGtdvslavnleekvlhGviffPrwveeepekt 98 
                  l++f Gkhl+ytydnGw+yely+kne+tid+rihsG+vg+rwvkdq+v+ivr+ae+ ykvswtePtGt+vsl++n+++k +hG+iffPrwv+++pe+t
   EHT98419.1   9 LDGFTGKHLVYTYDNGWNYELYIKNEDTIDHRIHSGMVGNRWVKDQHVYIVRVAENSYKVSWTEPTGTSVSLIANMSDKLFHGTIFFPRWVINNPERT 106
                  689*********************************************************************************************** PP

  PA_decarbox  99 vcfqndhidlmeayrdagptyPkevvdefatitfledagkddeeviavapeelpedyaa 157
                  vcfqndh+d+m +yrdagp yP+ev+defatitf++dagk++e+via+a++elp+++++
   EHT98419.1 107 VCFQNDHLDEMAKYRDAGPNYPIEVIDEFATITFVRDAGKNNEDVIACAASELPANFPE 165
                  *********************************************************97 PP

>> MoaF  MoaF N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   5.4e-08   0.00048      21      97 ..       9      87 ..       2      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.4e-08
                --TTTT-EEEEEETTEEEEE...EETTEEEEEE....TTTTEEEEEE-EEEECCTTEEEEEEEETTSTTEEEEEEEETTTT CS
        MoaF 21 vddLaGrtltlalengatieheffdadtlrWte....eekeesgeaeyeatevregiYfvdflkkereaesvslvldlrtg 97
                 d  +G++l  +++ng+++e  + ++dt++ +      ++    ++++ +++v+e+ Y v +++++    svsl+ +++++
  EHT98419.1  9 LDGFTGKHLVYTYDNGWNYELYIKNEDTIDHRIhsgmVGNRWVKDQHVYIVRVAENSYKVSWTEPTGT--SVSLIANMSDK 87
                57889***************************98776566666788899****************965..*****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1446.50
//
Query:       EHT98420.1  [L=241]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-16   58.5   0.3    1.4e-15   57.5   0.3    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.3     8e-20   1.4e-15      79     209 ..       2     166 ..       2     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 8e-20
   DDE_Tnp_1  79 lvlaDaGYasaelldtleekgvdyiirlkkntklyrk......................g...............aeskrrgrlrkhdrnkiltksqkr 140
                 +v++DaG+  ++++ ++++ g+d++ r+++nt+l+                        +                + k +gr +k+ r++i++ +q r
  EHT98420.1   2 IVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrtgeiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVR 99 
                 59******6.**************************999998887777776666655550555555566666666777789999999999999999999 PP

   DDE_Tnp_1 141 rnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrk.fgldrlryrglnrveaqlllll 209
                  ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+  fg++ + ++++ + ++q+l ll
  EHT98420.1 100 CGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKSErFGFGLRASYSRSAGRIQVLSLL 166
                 999.66666666555..45569************************999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1799.07
//
Query:       EHT98421.1  [L=141]
Description: putative transmembrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-08   34.0   6.1    2.3e-08   34.0   6.1    2.1  2  Sulf_transp  Sulphur transport


Domain annotation for each model (and alignments):
>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.0     0.019   3.4e+02     266     275 ..      15      24 ..       4      45 .. 0.53
   2 !   34.0   6.1   1.3e-12   2.3e-08     241     310 .]      57     133 ..      54     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.019
  Sulf_transp 266 lGGllMGfGa 275
                  +GGll G  a
   EHT98421.1  15 AGGLLIGAAA 24 
                  3333333333 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.3e-12
  Sulf_transp 241 aflaallsgefkleapka.......rellaallGGllMGfGarlAgGCniGaglsgiaslslsgwlalvflllGavl 310
                  af+a l+s  + +++++a        +  + +l Gll+G Garl+ GC++G+g+ g++ ls  + +a++ ++l a+l
   EHT98421.1  57 AFIAGLVSSPLVFQLFSAlpaididASWGRLVLAGLLVGLGARLGSGCTSGHGVCGLSRLSPRSLVATLVFMLTAML 133
                  56666666666666555323333335788999**********************************99999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1065.15
//
Query:       EHT98422.1  [L=142]
Description: hypothetical protein CKS_4788 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00064   19.4  12.2    0.00064   19.4  12.2    2.6  2  Sulf_transp      Sulphur transport
  ------ inclusion threshold ------
       0.47   10.3   0.2       0.47   10.3   0.2    3.4  4  LapA_dom         Lipopolysaccharide assembly protein A domain
       0.99    9.5  16.1       0.94    9.5   3.1    2.2  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.8     0.068   4.1e+02      57      72 ..       6      21 ..       1      23 [. 0.81
   2 !   19.4  12.2   1.1e-07   0.00064      31     103 ..      51     130 ..      34     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.068
  Sulf_transp 57 livGGllFGvGMalaG 72
                  ++ GllFG G+ ++G
   EHT98422.1  6 SLLSGLLFGTGLLVSG 21
                 57889******99988 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.1e-07
  Sulf_transp  31 vaavgfqllaaaglidlpksaf......pv.vglivGGllFGvGMalaGgCasgtlyrvGeGslralitllffilgaval 103
                  +a +++++la+ +  ++ +++f      ++   li G+ lFG+G  laG C++ +l+ +G+G l+ ++ +l++ +g+ ++
   EHT98422.1  51 IAGLVTFWLASRRKRPVFEETFylpgnrTLdKRLISGAALFGIGWGLAGICPGPALVLLGGGVLKGIVFVLAMLAGMLLF 130
                  5556667777666665533323111111223678********************************99999998887654 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.9     0.073   4.4e+02      22      35 ..       2      15 ..       1      27 [. 0.67
   2 ?   10.3   0.2   7.9e-05      0.47      16      38 ..      39      61 ..      28      65 .. 0.79
   3 ?   -4.9   1.6         3   1.8e+04      26      33 ..      90      97 ..      87     100 .. 0.60
   4 ?    0.8   1.5     0.075   4.5e+02      21      33 ..     117     129 ..     106     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.073
    LapA_dom 22 lllvafgiGallgw 35
                ++l++++ G+l+g 
  EHT98422.1  2 VVLFSLLSGLLFGT 15
                67777888877663 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.9e-05
    LapA_dom 16 elpLsllllvafgiGallgwlls 38
                + +L+l++ +a+++G++  wl+s
  EHT98422.1 39 DPSLALVMGGAVIAGLVTFWLAS 61
                66899999999999999999986 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 3
    LapA_dom 26 afgiGall 33
                 fgiG  l
  EHT98422.1 90 LFGIGWGL 97
                57777654 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.075
    LapA_dom  21 llllvafgiGall 33 
                 ++ ++a+++G+ll
  EHT98422.1 117 IVFVLAMLAGMLL 129
                 5566666666654 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.1   0.00016      0.94      47     101 ..       7      71 ..       1      73 [. 0.60
   2 ?    5.8   5.2    0.0023        14      31      88 ..      82     130 ..      80     140 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
  Phage_holin_3_6  47 allalllllvala..........lalaa..lwlaalivaavllvlagvlalvglkklkkakplpert 101
                      +l +ll+ + +l+           +l++  +w   l +    +v+ag++ ++  ++ k+  p++e+t
       EHT98422.1   7 LLSGLLFGTGLLVsgmanpakvlGFLDItrAWDPSLALVMGGAVIAGLVTFWLASRRKR--PVFEET 71 
                      33333333333332333444543333436889899998888888888888888887777..889998 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0023
  Phage_holin_3_6  31 kragsgagllgaagvlallalllllvalalalaalwlaalivaavllvlagvlalvgl 88 
                      kr++sga+l+g++  la +  + +lv+l  ++         + ++++vla++++++  
       EHT98422.1  82 KRLISGAALFGIGWGLAGICPGPALVLLGGGV---------LKGIVFVLAMLAGMLLF 130
                      79999*****9998888888888888887666.........55566666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1145.72
//
Query:       EHT98423.1  [L=338]
Description: LacI family sucrose operon repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-18   64.9   0.1    9.5e-18   63.7   0.1    1.7  1  LacI          Bacterial regulatory proteins, lacI family
    2.9e-17   63.5   0.2      1e-15   58.5   0.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
      5e-14   52.4   0.0    7.8e-14   51.8   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.2e-10   40.0   0.0    4.1e-10   39.7   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.021   15.2   1.0       0.35   11.2   0.2    3.1  3  HTH_31        Helix-turn-helix domain
      0.076   12.8   0.6       0.21   11.4   0.6    1.7  1  TetR_N        Bacterial regulatory proteins, tetR family
      0.082   12.7   0.1        0.2   11.5   0.1    1.6  1  HTH_10        HTH DNA binding domain
       0.15   12.0   0.1       0.37   10.7   0.1    1.7  1  HHH           Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   4.2e-21   9.5e-18       1      46 []       8      56 ..       8      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 4.2e-21
                -HHHHHHHCTS-HHHHHHHCTTS...SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk...erVseetrerVeaameelnYiPn 46
                ti D+A lAGVSkaT+S vLn++    rV++etrerV+a +++++Y+P+
  EHT98423.1  8 TISDIAALAGVSKATASLVLNGRgkeLRVAQETRERVMALAQQHHYQPS 56
                8**********************9999*********************7 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.051   1.1e+02     116     164 ..      71     123 ..      42     124 .. 0.78
   2 !   58.5   0.0   4.5e-19     1e-15       1     165 [.     175     335 ..     175     336 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.051
                   CSSSS--.....EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--G CS
  Peripla_BP_3 116 alssPpl.....TtvrqpleelGraaaellldllegekappeqvllppelveRe 164
                   +l++P +      +++ +le l+r+a  +ll   ++e+a +e+ ++   lv R+
    EHT98423.1  71 GLVVPEItnygfAVFSHALENLCREAGLQLLISCTDENASQETLVVNN-LVSRQ 123
                   555666644444678899999**9998888877778888888877755.88885 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 4.5e-19
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH..HHCC-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal..klaalPtAviaasDelAlgvlqalre 95 
                   ve+L+++   ++ f+g  g+ ++s  ++r++gf q l+++g+++++ ++ +  ++  ++++      al   l+++P+Av+ a   l  gvl++  +
    EHT98423.1 175 VERLARAHPDEVYFLG--GQPRLSPTKDRLAGFMQGLARAGVTPRPEWIIQGNYHPSSGYEMFA---ALcaRLGRPPKAVFTAACGLLEGVLRYMSQ 266
                   6788888889999***..9999*********************************999999966...334555669********************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   ++l    d+ + +fdd  l   +s  + tv+q++++l++++   + ++++g++ +++q++lp +l +R+S
    EHT98423.1 267 HHL-LESDIHIASFDDHYLYDSLSLHIDTVEQDVPRLAQECFSVITQMIQGQDLAERQIVLPARLRYRSS 335
                   999.58*********98888888888******************************************99 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   3.5e-17   7.8e-14       2     224 ..      68     288 ..      67     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 3.5e-17
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPc 97 
                   ++lglv+p+ ++  f+    +++   +e g ++l+  ++e++ ++   ++ l ++++dgli+a+s++s +d ++  e+ +pv++ ++ + +   +P+
    EHT98423.1  68 HTLGLVVPEITNYGFAVFSHALENLCREAGLQLLISCTDENASQEtLVVNNLVSRQVDGLIVASSQQSDSDFLKLSEQ-LPVVLFDRHVNNS-SLPL 162
                   89********9999*******************9999999999998999*******************9999999999.*********8888.**** PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-...TT-SEEE-SSHHH CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh...Peidaivaindea 191
                   vi d  +  +e  + L ++   + +  l+g+   + +k r  Gf++ la aG   +  ++ +g  +   ++e   +l  +    P   a+ + +   
    EHT98423.1 163 VITDSLTPTAELVERLARAHPDE-VYFLGGQPRLSPTKDRLAGFMQGLARAGVTPRPEWIIQGNYHPSSGYEMFAALCARLgrpPK--AVFTAACGL 256
                   ****************8877777.***********9*****************9999******99999999877777655445266..888777666 PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgL 224
                     G  + + ++  l+    +  ++  +  yd+L
    EHT98423.1 257 LEGVLRYMSQHHLLESDIHI-ASFDDHYLYDSL 288
                   66666666555545555555.666666666666 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.8e-13   4.1e-10       2     217 ..      71     280 ..      70     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.8e-13
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   g+vv+  +n  f  +  +le+ ++e+g +  + + ++ +a+++  +++++++++vdg+iva+ + +   ++lk    ++ pVv fd+   ++++ l 
    EHT98423.1  71 GLVVPEITNYGFAVFSHALENLCREAGLQLLI-SCTDENASQETLVVNNLVSRQVDGLIVASSQQSDS-DFLKL-S-EQLPVVLFDRH--VNNSSLP 161
                   67888999996777999***********9999.69999999999*****************7775444.46654.4.459********..******* PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHH..TTTECEEEESSC CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqaleallt..anpldgilaand 192
                    v +d+ +  + + e la++ +++   v+ l G+p  + +++r++gf++ l+   g++  +e++ ++n+ ++ +++  +al +    p +++++a  
    EHT98423.1 162 LVITDSLTPTAELVERLARAHPDE---VYFLGGQPRLSPTKDRLAGFMQGLAR-AGVTPRPEWIiQGNYHPSSGYEMFAALCArlGRPPKAVFTAAC 254
                   **********************87...9999*********************9.5555555555566****************876679******** PP

                   CHHHCHHHHHHHTTTTSTEE.EEEES CS
  Peripla_BP_4 193 gmaegalealeaaglagkvv.vtgqD 217
                   g  eg+l+++++  l   ++ ++ +D
    EHT98423.1 255 GLLEGVLRYMSQHHLLESDIhIASFD 280
                   ************99955543366665 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00016      0.35      13      51 ..       5      48 ..       1      68 [. 0.81
   2 ?    0.7   0.0       0.3   6.7e+02      41      53 ..     169     181 ..     163     182 .. 0.85
   3 ?   -2.2   0.0       2.4   5.4e+03      46      58 ..     234     246 ..     219     257 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
      HTH_31 13 aGLsqeevAerlgvsestlsrlEqGrrgrp.....spavleala 51
                 +++  + A+++gvs++t s + +Gr  +      +++ + ala
  EHT98423.1  5 KRVTISDIAALAGVSKATASLVLNGRGKELrvaqeTRERVMALA 48
                578999********************987745555555666666 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.3
      HTH_31  41 rpspavlealara 53 
                  p+ + +e+lara
  EHT98423.1 169 TPTAELVERLARA 181
                 4999********9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
      HTH_31  46 vlealaralgldp 58 
                   +al+  lg +p
  EHT98423.1 234 MFAALCARLGRPP 246
                 5556665555544 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   9.3e-05      0.21      16      32 ..       6      22 ..       4      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.3e-05
                T--HHHHHHHHTSSHHH CS
      TetR_N 16 attvreIAkrAGvskga 32
                ++t+++IA+ AGvsk++
  EHT98423.1  6 RVTISDIAALAGVSKAT 22
                79*************98 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   9.1e-05       0.2      22      44 ..       5      27 ..       3      30 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.1e-05
      HTH_10 22 RrvtlkeLAkelGIskstlsehL 44
                +rvt++++A   G+sk+t+s  L
  EHT98423.1  5 KRVTISDIAALAGVSKATASLVL 27
                89****************98776 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00017      0.37       8      28 ..       7      27 ..       5      29 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                SSHHHHHTSTT-SHHHHHHHH CS
         HHH  8 asreeLlalPGVGpktAeaIl 28
                 ++ +++al GV ++tA  +l
  EHT98423.1  7 VTISDIAALAGVSKATASLVL 27
                699**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2604.29
//
Query:       EHT98424.1  [L=469]
Description: sucrose-6-phosphate hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-93  311.1   0.0    1.1e-92  310.9   0.0    1.1  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    9.8e-11   41.9   0.0    1.8e-10   41.1   0.0    1.3  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
     0.0044   16.4   0.1       0.66    9.2   0.0    2.3  2  Glyco_hydro_43   Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.9   0.0   1.9e-96   1.1e-92       1     305 []      31     336 ..      31     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: 310.9 bits;  conditional E-value: 1.9e-96
                      SB--SSEEEEEEEEEEECTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-EEEEEEEE-T.... CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvyykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddklvllYTgnvk.... 90 
                      H++p +g+lNDPng++ ++g YhlFYq+np g+++++++Wgh++S Dl+hW ++pval pdee+d++g++SGsav d+++l+l+YTgnvk    
       EHT98424.1  31 HLAPVTGLLNDPNGFIHFDGHYHLFYQWNPLGCEHKHKCWGHWRSADLLHWSHEPVALLPDEEYDRSGCYSGSAVDDNGTLTLCYTGNVKfadg 124
                      9******************************************************************************************997 PP

                      CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCT.TCCEEEEEEESSSSSEEEECCESEECC.T.... CS
  Glyco_hydro_32N  91 eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdk.kkgkillYkskdlkewelaselleskkek.... 179
                      +++  Q+la+  + +  f k    pv++  p+++t h+RDPkv w++  +w+mv+gaqdk  kgk+ll + +dl++we  +e++ s   +    
       EHT98424.1 125 SRTAWQCLAVQ-NPDGGFDK--LGPVLPL-PAGYTGHVRDPKV-WRHGAHWYMVLGAQDKqLKGKVLLLRGSDLHHWENLGEIAGSGLGGlgea 213
                      66*********.9999****..89***95.*************.****************9*************************98778999 PP

                      TTEEEEEEEEEEECSTT-ECEEEEEEEEC.STT......TTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECCTTTCEEEEEEE CS
  Glyco_hydro_32N 180 ggmwEcpdlfeldekdeeekvklvlkvspqgle......dntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfededkrriligWm 267
                      g+mwEcpd+f+l e++       +l+++pqg+e       n+++   + g++d+e++++ ++ + ++elD G++fYA+qt  +ed+rr+l+gWm
       EHT98424.1 214 GYMWECPDMFTLGEST-------FLICCPQGIEreekrfLNSHPCACLSGTLDYENARY-TH-GGFTELDAGFEFYAPQTTLTEDGRRLLVGWM 298
                      ****************.......***********999999999999*************.55.7****************************** PP

                      S-TTTHCCCCC...CTEE-EE--EEEEEES-TSSSEEEEE CS
  Glyco_hydro_32N 268 gewdseeadvp..ekgwagalslpReltlkdsgkkLvqkP 305
                      g +d e+ ++p  + gw + ++++Rel+ +d  +kL+q+P
       EHT98424.1 299 GVPDGEDMHQPtvKFGWIHQMTCIRELSARD--GKLYQQP 336
                      *****998888999***************88..*****99 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0     3e-14   1.8e-10      95     140 ..     403     446 ..     383     462 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3e-14
                      EEEE---..-.EEEEEEEETTEEEEEET.TTEEEEEE--..TTTTEE CS
  Glyco_hydro_32C  95 esapleldgk.lkLrilvDkssvEvFvndGrtaiTsrvyPtedstgi 140
                      e+ + + +g+  kL+il D+ssvE+F+ndG+ +++sr +Pt +   +
       EHT98424.1 403 EWLYRHWNGRaHKLHILCDHSSVEIFINDGEGVMSSRYFPTHP---A 446
                      444444444339*****************************55...2 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.1    0.0026        16      15      84 ..      45     116 ..      32     152 .. 0.60
   2 !    9.2   0.0   0.00011      0.66       8      52 ..     156     202 ..     152     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0026
                     EEEETTCEEEEEEEBTEE.....SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEE CS
  Glyco_hydro_43  15 ilrvgedyYlvtstfewf.....pglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyyt 84 
                      ++ ++ y l++  ++       +++  ++S dL +W+ +  +l   ++ +  ++ + +  +  + +g+  l yt
      EHT98424.1  45 FIHFDGHYHLFYQWNPLGcehkhKCWGHWRSADLLHWSHEPVALLPDEEYD--RSGC-YSGSAVDDNGTLTLCYT 116
                     455555566666555544555558899999999999999987776555544..4444.55666666666555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00011
                     SSEESEEEEEETTCEEEEEEEBTEE..SEEEEEEESSSSSCEEEEEC CS
  Glyco_hydro_43   8 gfypDpsilrvgedyYlvtstfewf..pglrifhSkdLvnWkqvgrv 52 
                     g  +Dp + r g  +Y+v + +++    ++ + + +dL +W++ g++
      EHT98424.1 156 GHVRDPKVWRHGAHWYMVLGAQDKQlkGKVLLLRGSDLHHWENLGEI 202
                     7789**************9998887778999***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3714.23
//
Query:       EHT98425.1  [L=456]
Description: PTS system sucrose-specific IIBC components [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-49  167.4  38.5    4.1e-49  167.4  38.5    1.9  2  PTS_EIIC      Phosphotransferase system, EIIC
    2.4e-12   46.1   0.1    4.6e-12   45.2   0.1    1.4  1  PTS_EIIB      phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4  38.5   4.5e-53   4.1e-49       1     324 []     110     395 ..     110     395 .. 0.94
   2 ?   -1.9   4.7      0.14   1.3e+03      79     138 ..     393     450 ..     390     454 .. 0.55

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 4.5e-53
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 s++f+++ip+++a+G+l+gl        +++    g+++  + l+ +l+++++a+f +Lp+l+++++a ++  gg++++g++ + +l ++ l++a++v+
  EHT98425.1 110 SNIFVPIIPAIVASGLLMGLLG------MVK--TYGWVNPENALYIMLDMCSSAAFIILPILIGFTAAREF--GGNPFLGATLGGILTHPALTNAWGVA 198
                 699*******************......222..3689999*******************************..*******************9999999 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggs 198
                 +  +      +++++gi++ + g++g+++++lla+++++ +ek +++ +P++l+ ++++ +++ii+++v+ll++g++++ ++++i+ +l++    l+++
  EHT98425.1 199 AGFH------TMNFFGIEVAMIGYQGTVFPVLLAVWFMSLLEKQLRRIIPDALDLILTPFLTVIISGFVALLIIGPAGRALGDGISFVLST----LIAH 287
                 8888......579******************************************************************************....7777 PP

    PTS_EIIC 199 gsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskqkkllgsaaltp 295
                  ++l++l+fg+l+++++++G+Hh f+a+++ + +++s  +                  +f+   +++++++++ a+++++f+++  k k +++  a+ +
  EHT98425.1 288 AGWLAGLLFGGLYSVIVITGVHHSFHAIEAGLLGNPSIGV------------------NFLLpiWAMANVAQGGACLAVWFKTQDAKIKAITLPSAF-S 367
                 77********************************888888..................5554569*******************8888888888888.8 PP

    PTS_EIIC 296 flfGItepleFgfpfvlnlllfipallag 324
                 +l+GIte ++Fg++++++++ fi+ l++g
  EHT98425.1 368 ALLGITEAAIFGINLRFMKP-FIAGLIGG 395
                 9*******************.99999987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.14
    PTS_EIIC  79 aglagligllafnllaaisvlllaagala...sakasilgiktlstgvfgaiivgllaaylyn 138
                  g a++ +++++     + v+++a+g++    +a+   +++ +   g++ a+ v+++ a+l++
  EHT98425.1 393 IGGAIGGAWVVS-----MKVYMTAVGLTGlpgMAIVQASSLLNYIIGMVIAFSVAFVIAFLLK 450
                 445555555554.....4466666666544445566666666666666666666666666655 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   5.1e-16   4.6e-12       2      34 .]       9      41 ..       8      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 5.1e-16
                HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                ++l +lGGk+NI s++hCaTRLRl+l  ++k+d
  EHT98425.1  9 ALLLLLGGKENIASAAHCATRLRLVLVEDAKAD 41
                67889*********************9888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3780.16
//
Query:       EHT98426.1  [L=505]
Description: maltoporin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.8e-105  351.5   9.6   1.5e-104  351.0   9.6    1.2  1  LamB          LamB porin
    3.3e-18   65.4   6.8    3.3e-18   65.4   6.8    2.9  3  Sugarporin_N  Maltoporin periplasmic N-terminal extension
     0.0017   17.8   6.8     0.0027   17.1   6.8    1.2  1  Tropomyosin   Tropomyosin
  ------ inclusion threshold ------
      0.045   13.6   0.3       0.07   13.0   0.3    1.2  1  SKA1          Spindle and kinetochore-associated protein 1
      0.052   13.8   2.9      0.077   13.2   0.8    2.2  2  XhlA          Haemolysin XhlA
      0.091   11.6   0.3       0.12   11.1   0.3    1.2  1  Fmp27_WPPW    RNA pol II promoter Fmp27 protein domain
        0.1   12.0   5.6       0.18   11.1   5.6    1.3  1  DUF4407       Domain of unknown function (DUF4407)
       0.44   11.0   6.6       0.73   10.2   6.6    1.2  1  CCDC53        Subunit CCDC53 of WASH complex
       0.68   10.3  12.6        1.3    9.4  12.6    1.3  1  Uso1_p115_C   Uso1 / p115 like vesicle tethering protein, C t
        1.2    9.6  10.9          2    8.8  10.9    1.3  1  DUF4200       Domain of unknown function (DUF4200)
        1.5    8.5  16.4        2.5    7.9  16.4    1.2  1  ERM           Ezrin/radixin/moesin family
        6.1    6.5   8.3         11    5.7   8.3    1.3  1  GrpE          GrpE


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.0   9.6  9.8e-108  1.5e-104       1     379 []      97     505 .]      97     505 .] 0.92

  Alignments for each domain:
  == domain 1  score: 351.0 bits;  conditional E-value: 9.8e-108
                 EEEEEEEEEEEETTSS.B--...----TT-S---.-TT---SEEEEEEEEEEEEEETTEEEEEEEEEEEEE-............-EEEEEEEEEET-ST CS
        LamB   1 FhGYaRsGvgvssegg.eqk...cfqaggagsky.RLGnEcdtyaElklgkelekedgkkfkvdvmlayssdelkndstadesdlalrqayveaknlle 94 
                 FhGYaRsG++++s+ + +q+   +++ag++g++  RLGnE dty+El+l+++ + e+g++ ++++mla   ++++nd+ta +sdl+lrqa+ve++ l +
  EHT98426.1  97 FHGYARSGLLMNSSAAkTQGgptVTPAGETGGHVgRLGNEPDTYVELNLEHKQTLENGATTRFKAMLADG-QRTYNDWTAASSDLNLRQAFVELGQLPT 194
                 9***********77774666899********999**********************************44.468************************9 PP

                 TST...T-EEEEEEE--S-E.EEGGGTEEEE---EEEEEEEEEE-SS.SEEEEEEEEEEEEEEEEC.EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEE CS
        LamB  95 flp...eatlWaGkrfyrrn.dihilDfyywdlsGtGaGiedidlgd.gklslalvrsdesddssskkevsnnaldlrltgiklndggklelgldyara 188
                 f++   + t+WaGkrf+r+n dih++D+++++l+GtGaGi+d++++d +  +l+l++++++d +    +++n+a+++ lt +++   g ++l+l+ +ra
  EHT98426.1 195 FTGafkDTTVWAGKRFDRDNfDIHWIDSDVVFLAGTGAGIYDMKWSDqAHSNLSLYGRTFGDIE----NNDNTAQNYILTANNYY--GPFQLMLSGMRA 287
                 999999***************************************998*************955....799*************9..************ PP

                 E--T..........-TT---EEE.EEEEEEEEEETT...EEEEEEEEEEECCCTT-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEEE CS
        LamB 189 nksd..........akkaakdgv.mltlehtqsflg...gfnklalqygtglgaenkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvyq 273
                 +++d          + +aa++g+ +l   h++sf+g   g+ k+al yg+glgae k++gs+g l      da+++rl+++g ++l+  +++a+av++q
  EHT98426.1 288 KDNDdrldvnglkvKGDAANTGLhALVGLHNDSFYGlreGTAKTALLYGHGLGAEVKAIGSDGALL----PDADTWRLASYGITPLGGGWHIAPAVLAQ 382
                 **************9999*****9555555556999999***************************....67*************************** PP

                 EEEE..TTS--EEEEEEEEEEEEECCTTEEEEEEEEEEEEE...E..........EEEEEEEEEEEES..SSSTT-SSEEEEEEEEEEEEESEEE.... CS
        LamB 274 ksddrydngddkkwlsagvRpvykltdnfklllElgydrvk...k.........gnlyKlTlaptlka..gsgfwsRPelRlfatyakwneaakd.... 354
                 +s+dry +gd+++w++a++R+++ lt+nf++++E++y++++   +         gn+yKlT+aptlka   ++f +RPe+Rlfat+++w++++++    
  EHT98426.1 383 SSKDRYVKGDSYQWATANMRLIQGLTENFEMQYEATYQYMDlrpEgfnqrsavsGNFYKLTVAPTLKAsnVGEFLKRPEIRLFATWMDWDHRLDNyarg 481
                 *****************************************76615556677779*************9999***********************8764 PP

                 .TGGGSB-SS-EEEEEEEEEEEEEEE CS
        LamB 355 .alskagakkgdtseltfGvqaEaWW 379
                  a   +++  +  +e++fGvq+E+W+
  EHT98426.1 482 dA--FGSSGFEAGGEWNFGVQMETWF 505
                 31..22333345899**********9 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   6.8   2.2e-21   3.3e-18       1      54 [.       1      55 [.       1      56 [. 0.96
   2 ?   -1.0   3.3       1.2   1.8e+03      37      53 ..      62      78 ..      55      81 .. 0.76
   3 ?    2.0   3.3      0.14     2e+02      21      37 ..      71      87 ..      64      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 2.2e-21
  Sugarporin_N  1 Mkkktlalaialllstaasv.aaaasltiEaRLaaLEkrLqeAeqraqaAearak 54
                  M+kk la++++lll  + ++ a  ++++iEaRLaaLEkrLq+Aeqra aAe+ra+
    EHT98426.1  1 MRKKRLAATVGLLLCAGPALaAEPSMNSIEARLAALEKRLQAAEQRADAAERRAN 55
                  9***********999888888*********************************8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
  Sugarporin_N 37 krLqeAeqraqaAeara 53
                  + L++A+q++qa+ ++ 
    EHT98426.1 62 QQLASAQQQTQATATQV 78
                  56888888888876664 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
  Sugarporin_N 21 aaaasltiEaRLaaLEk 37
                  ++a++  +E+R a+LE+
    EHT98426.1 71 TQATATQVEQRTAKLEQ 87
                  66777789999999998 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   6.8   1.8e-06    0.0027     173     225 ..      28      80 ..      21      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
  Tropomyosin 173 eyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaise 225
                  + e ++  Le++L++ae+Ra++AEr+++  ek++ +l  + ++ +   +++++
   EHT98426.1  28 SIEARLAALEKRLQAAEQRADAAERRANAAEKQAQQLASAQQQTQATATQVEQ 80 
                  67889999***************************998877777766666654 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   4.7e-05      0.07      22      89 ..      23      90 ..       9     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
                ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXX CS
        SKA1 22 kedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaass 89
                ++ ++ iea + ale+ l++ +++ +  e   + ++k+ ++ +  q+++q +++++ ++  k +++ s
  EHT98426.1 23 EPSMNSIEARLAALEKRLQAAEQRADAAERRANAAEKQAQQLASAQQQTQATATQVEQRTAKLEQKAS 90
                56788899999999999999999999999999999999999999999999999988888777666655 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.2e-05     0.077       2      37 ..      29      64 ..      28      67 .. 0.92
   2 ?   -1.0   0.0       1.4   2.2e+03      22      34 ..      77      89 ..      67      91 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
        XhlA  2 ikerlerietkldnleervdkleekaaeaeekiknl 37
                i+ rl+ +e++l   e+r d  e++a+ ae+++++l
  EHT98426.1 29 IEARLAALEKRLQAAEQRADAAERRANAAEKQAQQL 64
                899****************************99987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
        XhlA 22 kleekaaeaeeki 34
                ++e++ a+ e+k+
  EHT98426.1 77 QVEQRTAKLEQKA 89
                4444444444443 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   8.3e-05      0.12     173     243 ..      26      92 ..      20     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
  Fmp27_WPPW 173 kelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseess 243
                 ++ +e Rl+ le++++  e++ + +e + +      +++ ++l +  ++++   + +e+   +l+++++++
  EHT98426.1  26 MNSIEARLAALEKRLQAAEQRADAAERRANA----AEKQAQQLASAQQQTQATATQVEQRTAKLEQKASDD 92 
                 678999**************99999999999....678888888888888888888888888888887654 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.6   0.00012      0.18     133     238 ..      31      90 ..       7     109 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
     DUF4407 133 aelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakera 231
                 a+la+le++++a+++  daae+r++a++++                                              +++la+++++ +  +++ ++++a
  EHT98426.1  31 ARLAALEKRLQAAEQRADAAERRANAAEKQ----------------------------------------------AQQLASAQQQTQATATQVEQRTA 83 
                 233333333333333333333333333333..............................................44444444444444444444444 PP

     DUF4407 232 asqaaaa 238
                 + +++a+
  EHT98426.1  84 KLEQKAS 90 
                 4444444 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.6   0.00049      0.73      26      88 ..      22      84 ..      18      96 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00049
      CCDC53 26 vekrlqrleitlalLEakLsSipgleeveaeaaeastsddnaarkgppppppsseaaaaaaqa 88
                +e +++ +e++la LE++L+++++  ++ +++a+a+++++++  ++++++++++++ ++ +++
  EHT98426.1 22 AEPSMNSIEARLAALEKRLQAAEQRADAAERRANAAEKQAQQLASAQQQTQATATQVEQRTAK 84
                5678999***************98888887766555554332222222222222222222111 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  12.6   0.00087       1.3      19      75 ..      28      89 ..      20      96 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00087
  Uso1_p115_C 19 klkaelqslskalesleqk.....eakkaaesqakeleaenkklekeleklraelkeekeke 75
                 + +a+l +l+k+l+ +eq         +aae+qa++l + +++++    +++++ ++ ++k+
   EHT98426.1 28 SIEARLAALEKRLQAAEQRadaaeRRANAAEKQAQQLASAQQQTQATATQVEQRTAKLEQKA 89
                 44555555555555555551111111444455555555555555555555555555555544 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.9    0.0013         2      41     103 ..      27      89 ..      21      92 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
     DUF4200  41 qeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekl 103
                 + +e +l+ ++k l+  +++   a+++a+  +k+ ++ ++  ++ +a  ++++++ +kle+k 
  EHT98426.1  27 NSIEARLAALEKRLQAAEQRADAAERRANAAEKQAQQLASAQQQTQATATQVEQRTAKLEQKA 89 
                 678999******************************************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  16.4    0.0016       2.5      28      91 ..      26      89 ..      17      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
         ERM 28 LreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaelea 91
                ++  e +   L+++++ ae+ a+  e++a++ae++ q+l+ ++++++++  ++e+++++ e++a
  EHT98426.1 26 MNSIEARLAALEKRLQAAEQRADAAERRANAAEKQAQQLASAQQQTQATATQVEQRTAKLEQKA 89
                5666777788888888888888888888888888888888888888888888888888888776 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.3    0.0071        11       4      61 ..      37      94 ..      29      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0071
                ...CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHH CS
        GrpE  4 eeeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfai 61
                e++ +++e++ ++ e++ +++ek++++l ++ ++++a + ++++rt+k  ++a++++ 
  EHT98426.1 37 EKRLQAAEQRADAAERRANAAEKQAQQLASAQQQTQATATQVEQRTAKLEQKASDDGG 94
                46677888899999999999*****************************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2286  (0.127503); expected 358.6 (0.02)
Passed bias filter:                     1364  (0.0760779); expected 358.6 (0.02)
Passed Vit filter:                       285  (0.015896); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.40
# Mc/sec: 3797.35
//
Query:       EHT98427.1  [L=414]
Description: lactose/galactose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.4e-207  688.6  38.9   2.8e-207  688.4  38.9    1.0  1  LacY_symp   LacY proton/sugar symporter
    7.9e-22   77.6  51.5    5.5e-20   71.6  40.3    2.1  2  MFS_1       Major Facilitator Superfamily
    3.6e-20   72.2  38.8    1.7e-19   69.9  38.8    1.8  1  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
       0.37   10.9   5.8       0.41   10.8   3.5    2.2  2  DUF5432     Family of unknown function (DUF5432)


Domain annotation for each model (and alignments):
>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  688.4  38.9  6.2e-211  2.8e-207       2     410 ..       2     410 ..       1     413 [. 0.99

  Alignments for each domain:
  == domain 1  score: 688.4 bits;  conditional E-value: 6.2e-211
   LacY_symp   2 iplkntnfylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllq 100
                 ++lkntnf+lf+lffffyffim+ayfp+fp+wl++++++sk++tGi+f+ islfs+lfqplfGl+sdklGl+k+llwvi+ +lv+fapf+iyvf+pllq
  EHT98427.1   2 YYLKNTNFWLFGLFFFFYFFIMGAYFPFFPIWLHDINHISKGDTGIIFASISLFSLLFQPLFGLLSDKLGLRKHLLWVITGMLVMFAPFFIYVFGPLLQ 100
                 789************************************************************************************************ PP

   LacY_symp 101 lnilvGalvGgvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvad 199
                 +nil+G++vGg++lG++y+aga+aieayiekvsr+s+fe+G+ar+fGc+G+alcas+ Gi+f+i++++vfwl+sg+a+il+lll++s++++sssa+va+
  EHT98427.1 101 VNILAGSVVGGIYLGFIYNAGAPAIEAYIEKVSRRSHFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCAVILALLLFFSRTSNSSSATVAQ 199
                 *************************************************************************************************** PP

   LacY_symp 200 alGankeafslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvi 298
                 a+Gan++afsl+lalelfk++klw ++lyvvGv+++ydvfdqqfa+ff+s+f s+e+GtrvfGyvtt gellna imf+aplivnriG+knall+ag+i
  EHT98427.1 200 AVGANQSAFSLKLALELFKQPKLWFLSLYVVGVSCTYDVFDQQFANFFTSFFTSGEQGTRVFGYVTTLGELLNACIMFFAPLIVNRIGGKNALLLAGMI 298
                 *************************************************************************************************** PP

   LacY_symp 299 msvrilgsafattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivlsltlisv 397
                 msvri+gs+fatta+evvilk+lh++e+p+l+vg+fkyits+f++r+sati+l++f+++kqla++++s+laG++y+++Gfq aylv g+i l++tl+sv
  EHT98427.1 299 MSVRIMGSSFATTAVEVVILKTLHMFEIPFLIVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVPGCIALAFTLLSV 397
                 *************************************************************************************************** PP

   LacY_symp 398 ftlskskeqivle 410
                 ftls++ + + l+
  EHT98427.1 398 FTLSGPGPLTALR 410
                 *****99887666 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6  40.3   1.2e-23   5.5e-20       3     312 ..      14     333 ..      12     352 .. 0.74
   2 !   11.6   3.8   2.1e-05     0.095     129     174 ..     357     400 ..     347     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.2e-23
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll....fa....sslwlllvlrv 93 
                 l +f++++ +++++p++p++l +  +is+   g++++  +l+++++++++G lsd++G r+ ll+ +++++++ ++++    f+     +   +l++ v
  EHT98427.1  14 LFFFFYFFIMGAYFPFFPIWLHDINHISKGDTGIIFASISLFSLLFQPLFGLLSDKLGLRKHLLWVITGMLVM-FAPFfiyvFGpllqVN---ILAGSV 108
                 6789******************************************************999555555555555.3444122342333333...777777 PP

       MFS_1  94 lqGlgagalfpagaaliadwfpk.e.ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll.peepperkrkspkeeek 189
                 + G+  g+++ aga +i ++  k + +  + +g + ++  +G +l + + g++   ++ + vf++  + ++++++l  l++ +++++++++++++   +
  EHT98427.1 109 VGGIYLGFIYNAGAPAIEAYIEKvSrRSHFEFGRARMFGCVGWALCASIVGIMF-TINNQFVFWLGSGCAVILALL--LFFsRTSNSSSATVAQAVG-A 203
                 77777777777777777777777531455667**************99999999.7789*************9995..4442566666666666655.4 PP

       MFS_1 190 gtgpaplvpawkallkdpvlwillialllfffgfsg.....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllalll 283
                  +  ++l+ +  +l+k+p lw+l + ++++++ +       + +++ +++    g       g++  l+ l++a+++++a  +++r+g +++llla+ +
  EHT98427.1 204 NQSAFSLK-LALELFKQPKLWFLSLYVVGVSCTYDVfdqqfANFFTSFFTSGEQGTR---VFGYVTTLGELLNACIMFFAPLIVNRIGGKNALLLAGMI 298
                 44444444.4889999999*9555555555555555444545555555555555555...55556********************************** PP

       MFS_1 284 lllaalglallavt......ssavllllvlvliGf 312
                 +++  +g  ++ ++      ++ +++ ++++++G+
  EHT98427.1 299 MSVRIMGSSFATTAvevvilKTLHMFEIPFLIVGC 333
                 ***99999999999444433333333335555554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.1e-05
       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 + +l++i+  +l+g +++s+g+++++++ + ++l + +l   +++ 
  EHT98427.1 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVPGCIALAFTLL--SVFTL 400
                 56899*******************************998..44443 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9  38.8   3.8e-23   1.7e-19       4     377 ..      12     376 ..       9     384 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 3.8e-23
  MFS_1_like   4 lkilyFfffaalgsllPYltiylkskg.lkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsv 101
                   +++Ff+f ++g+ +P++ i+l++++ ++  + gii + + l+s+l +p++g l+D++g rk ++ + + +  v+f+ ++ i               v
  EHT98427.1  12 FGLFFFFYFFIMGAYFPFFPIWLHDINhISKGDTGIIFASISLFSLLFQPLFGLLSDKLGLRKHLLWVITGML-VMFAPFF-IY--------------V 94 
                 5689********************87537889********************************765433332.3333222.22..............2 PP

  MFS_1_like 102 aqdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkd.yGrqrlfGsvGyaifafitGilidhysvnllp.ysallyvlaallvisllv.v 197
                  + + + ++++  ++  +   f+ +a  + ++a  +++++ +++  +Gr r+fG vG+a+ a i+Gi+++  +  +    s  +++la+ll  s ++ +
  EHT98427.1  95 FGPLLQVNILAGSVVGGIYLGFIYNAGAPAIEAY-IEKVSRRSHFeFGRARMFGCVGWALCASIVGIMFTINNQFVFWlGSGCAVILALLLFFSRTSnS 192
                 233335567777777777888999*******986.56665555544***********************988774433523444444444444433303 PP

  MFS_1_like 198 lilnetekesklkvtkslqvllnilknpeviifllvalilgmswgi....ienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvkl 292
                 ++ +  ++  + + + sl+  l+++k+p+++++ l ++ +  ++ +    + nF++ ++ + +  + + G +++lg +++  + ffa  +++++G  + 
  EHT98427.1 193 SSATVAQAVGANQSAFSLKLALELFKQPKLWFLSLYVVGVSCTYDVfdqqFANFFTSFFTSGEQGTRVFGYVTTLGELLNACIMFFAPLIVNRIGGKNA 291
                 344444444444555556999**********99998776665555511116789*****999999********************************** PP

  MFS_1_like 293 liiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlk 377
                 l++a +++ +r ++ ++ + a+ v+++ +Lh + +  l + + +y+   +  +  at+  +   ++  l   + s+++G +++  
  EHT98427.1 292 LLLAGMIMSVRIMGSSFATTAVEVVILKTLHMFEIPFLIVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376
                 ********************************************************99988888888888888888888888765 PP

>> DUF5432  Family of unknown function (DUF5432)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.68     3e+03      47      62 ..      43      58 ..      29      81 .. 0.65
   2 ?   10.8   3.5   9.1e-05      0.41      21      73 ..     313     364 ..     306     365 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.68
     DUF5432 47 sdtkilfvdvldlill 62
                 dt+i f ++  + ll
  EHT98427.1 43 GDTGIIFASISLFSLL 58
                5556665554443333 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.1e-05
     DUF5432  21 ihllslhPlyvimsPmdiiGfnkyfrsdtkilfvdvldlillcfvrtflgelf 73 
                 + ++ l+ l++   P  i+G  ky++s+ +++f   + l+ +cf+   l+++f
  EHT98427.1 313 VEVVILKTLHMFEIPFLIVGCFKYITSQFEVRFSATIYLVCFCFF-KQLAMIF 364
                 55667888889999******************************9.5677887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3016.47
//
Query:       EHT98428.1  [L=1028]
Description: beta-D-galactosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-117  392.6   0.0   1.6e-117  392.0   0.0    1.3  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
    7.5e-67  224.5   0.3    1.5e-66  223.5   0.3    1.6  1  Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding 
    1.7e-60  204.7   0.3    4.2e-60  203.4   0.1    1.7  2  Bgal_small_N     Beta galactosidase small chain
    4.5e-19   68.7   0.1    1.6e-18   67.0   0.0    2.0  2  DUF4981          Domain of unknown function(DUF4981)
    3.6e-16   59.8   0.0    8.1e-16   58.7   0.0    1.6  1  Glyco_hydro_2    Glycosyl hydrolases family 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.0   0.0  4.3e-121  1.6e-117       1     301 [.     336     629 ..     336     630 .. 0.97

  Alignments for each domain:
  == domain 1  score: 392.0 bits;  conditional E-value: 4.3e-121
                      EEEETTEEEETTEEE-EEEEEE-S-BTTTBTS--HHHHHHHHHHHHHCT--EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT CS
  Glyco_hydro_2_C   1 vevkdkllliNgkrllfkGvnrHedadrrGraideellvkDlkllkqlniNavRtsHYPnqeevyelcDeyGlyvidEanlethglaqklgeie 94 
                      v ++++lll+Ng++ll++G nrHe+++ +G+++d +++v+D+ l+kq+n+NavR+sHYPn++ +y lcD yGlyv+dEan+ethg++ +++   
       EHT98428.1 336 VSIENGLLLLNGQPLLIRGTNRHEHHPVHGQVMDRDTMVQDILLMKQNNFNAVRCSHYPNHPLWYSLCDYYGLYVVDEANIETHGMVPMNR--- 426
                      6799***********************************************************************************9555... PP

                      -CCCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSCHHHHHHHHHHHHHHH-TTSEEEEETCSSGGGTSSEEEECCTTTSSSTTCHH CS
  Glyco_hydro_2_C  95 psynvladnpewlkavldrieelverdkNHpsviiWSlgNEsgagedikalaelikklDptRlvhyegvaaareldviildiysrmyekvglle 188
                           l+d+p wl+a+ +r++++v+rd+NHp +iiWSlgNEsg+g++++al++++k+ Dp+R+v+yeg +a++ +++ii+++y+r+++++++++
       EHT98428.1 427 -----LSDDPAWLPAMSQRVTRMVQRDRNHPCIIIWSLGNESGHGANHDALYRWLKSEDPSRPVQYEGGGANTAATDIICPMYARVDQDQPFPA 515
                      .....89*************************************************************************************** PP

                      H....HHHHHHHCHHHHSS-EEEEEESE-BST--TTHHHHHHCCCH-CCCCCCCCCHCCHHHEEECETTEEEEEECETCTCSBSSBTCCCCSBE CS
  Glyco_hydro_2_C 189 e....lekelenekkklqkPlilcEYghamgnslGglqeytelfkkyeeyQggfiweyidqaiqkrdeavggellayggDfkdeqsdlefignG 278
                      +    ++k+l+     +q+PlilcEY+hamgnslGg+++y++ f++y+++Qggf+w+++dq+++++ e+ g+ + ayggDf d+++d++f++nG
       EHT98428.1 516 VpkwsIKKWLSM--PGEQRPLILCEYAHAMGNSLGGYAKYWQAFRQYPRLQGGFVWDWVDQSLIRYGEN-GEAWSAYGGDFGDTPNDRQFCMNG 606
                      988888899888..599****************************************************.************************ PP

                      SB-TTS-B-HHHHHHHHHCHCEE CS
  Glyco_hydro_2_C 279 lvtadrtpkpalqelkkvyekvk 301
                      lv+adrtp+p+l e+++ ++ ++
       EHT98428.1 607 LVFADRTPHPSLYEARHAQQFFQ 629
                      *****************999876 PP

>> Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.5   0.3   4.3e-70   1.5e-66       2     169 .]      53     219 ..      52     219 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.5 bits;  conditional E-value: 4.3e-70
                      EE-SEEEEEEEESSGGGSCCCCHCST-TTSEEEECSCEGCGG....SEEESSSTSS.TCTTBHHSS-CEEEEEEEEEE-HHHHHS.EEEEEESE CS
  Glyco_hydro_2_N   2 kslnGeWaFalfdapkgvdesWlesalqesrtiavPsdwelq....piytnveypidvdsadlptvngtgvYartfeidskwaek.kvrllFeg 90 
                      k lnGeW+Fa+f ap++v+esW   +l e+  iavPs w++q    piytnv+ypi+v+++++p++n+tg+Y+ tf++d +w+ + ++r++F+g
       EHT98428.1  53 KCLNGEWQFAYFTAPEAVPESWRTQDLAEAAPIAVPSVWQMQgydvPIYTNVTYPIPVNPPFVPAENPTGCYSLTFNVDAGWLVSgQTRVVFDG 146
                      679********************************************************************************999******** PP

                      EESEEEEEETTEEEEEEE-TTS-EEEEGGGGS-SEEEEEEEEEESTTGGGGGBECTCEESSSEEE--EEESEEEEEEEC CS
  Glyco_hydro_2_N  91 vtsasevwvngqevgkrqgsylpfefDltpylseGknriavkvlkwsdgsyieDeskaltgdlytlsGiyRdvsLlkkP 169
                      v+sa++vw+ng++vg+ q+s+lp+e+Dlt+yl  G+nr+av+vl+wsdgsy+eD+      d++++sGi+Rdv+Ll+kP
       EHT98428.1 147 VNSAFNVWCNGRWVGYGQDSRLPSEYDLTEYLVRGENRLAVMVLRWSDGSYLEDQ------DMWRMSGIFRDVTLLHKP 219
                      *******************************************************......****************99 PP

>> Bgal_small_N  Beta galactosidase small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1   4.1e+03      85     128 ..     129     181 ..      56     183 .. 0.64
   2 !  203.4   0.1   1.2e-63   4.2e-60       4     241 ..     757    1023 ..     755    1024 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
                   EEEEEEEEETTCEEEEEEEE..........-SEEEEEEEECTTECEEEEEEEE CS
  Bgal_small_N  85 evtvtYtidadgeikvkvvk.........elpriGlrlelpkefeqvewyGrG 128
                   +v+  + ++++ ++  + v+          +  +G + +lp+e++  e++ rG
    EHT98428.1 129 NVDAGWLVSGQTRVVFDGVNsafnvwcngRWVGYGQDSRLPSEYDLTEYLVRG 181
                   44444555555544444433566666666677888888888888888888888 PP

  == domain 2  score: 203.4 bits;  conditional E-value: 1.2e-63
                    TEEEEEETTTTCEEEEEETTEE-EEEC.CEE---S--HHH.......HHHTTS.HHHHHHTTCEEEE....EEEECCEEEEEEE.EEEEEC..CE CS
  Bgal_small_N    4 dfsvtfdkktGeltslkyngkellleg.kpnfwRaptdND.......gkkpkk.kakWkkaglleve....eaveveeeeeeev.vtveyr..la 82  
                    + +++f++++G lt++  ++k  ll++   +f Rap+dND         +p++ +++Wk+ag  +++    ++++++ +++  v +t+  +  + 
    EHT98428.1  757 NQRWAFSREQGILTQYWIDEKAQLLSPlTDQFTRAPLDNDigvseatRIDPNAwVERWKAAGHYQADvitlQCSAETLTDA--VlITTAHAwqF- 848 
                    789*********************9999******************977777789*******6333343322222222222..13322222322. PP

                    EC.....EEEEEEEEETTCEEEEEEEE.........-SEEEEEEEECTTECEEEEEEEESS--BTTB-SSSEEEEEEECHGHHS---SS--S--- CS
  Bgal_small_N   83 pk.....evtvtYtidadgeikvkvvk........elpriGlrlelpkefeqvewyGrGPgEnYpDrktgakvGvYestvddlytpYirPqenGn 164 
                     +       + tY+id+ ge++v+v +          +riG+ ++l++  ++v+w+G+GP+EnYpDr t+a +++++ ++dd+ytpY++P enG 
    EHT98428.1  849 -QgktlfVSRKTYRIDGFGEMQVTV-NvevardtpYPARIGMCCQLAEVADRVNWLGLGPHENYPDRLTAACFDRWDLSLDDMYTPYVFPTENGL 941 
                    .1457889999*********99999.336999998899********************************************************* PP

                    EEEEEEEEEECTTT...EEEEEESS-HHHHHH-SSGGG-EEE.EEEEEEEEEE----.SCCSS--S-GGGS-C-SEEEEEEE CS
  Bgal_small_N  165 rtdvrwleltdkeg...fsfsalpytteeleeakhpyeLkkr.etvlnldaaqmGvG.ddScgpevleeyrlpakeyefsft 241 
                    r+++r l+   +++   f+f++++y++++l ++ h++ L+++  t+ln+d+ +mGvG ddS++p+v +e++l+a +y ++ft
    EHT98428.1  942 RCGTRELRYGVHQWrgdFQFNISRYSQKQLMDTSHRHLLQPEaGTWLNIDGFHMGVGgDDSWSPSVSPEFLLSAGRYGYQFT 1023
                    ***********884456************************87999***************************879999997 PP

>> DUF4981  Domain of unknown function(DUF4981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   4.4e-22   1.6e-18       1      86 [.     640     726 ..     640     727 .. 0.95
   2 ?   -2.9   0.0       2.7   9.7e+03      56      72 ..     864     882 ..     845     883 .. 0.75

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 4.4e-22
                 EEEEE--SS--GGGEEEEEEEEETTEEEEEEEEEE---TT-EEEEE--S.---TSS.EEEEEEEEEESS-BSSS-TTSEEEEEEEEE CS
     DUF4981   1 vtikNrydFtdlsdldlswellkdGkvvasgelelpvaPgesatvtlpetkeaees.eyfltvsfrlkedtpwaeaGhevafeQfal 86 
                 ++++ +y+F+  ++  l+w++ +dG ++a+ge++l++aP+ ++++tlp    +e++ + +ltv++ + ++t+w eaGh  a++Q++l
  EHT98428.1 640 LEVTSEYLFRHSDNEILHWSVAQDGNLLATGEVTLDIAPQGRQRITLPAMPLPESAgQLWLTVRVEQPQPTAWSEAGHISAWQQWPL 726
                 689*********************************************988877668****************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.7
                 S..EEEEEEEEEESS-BSS CS
     DUF4981  56 s..eyfltvsfrlkedtpw 72 
                 +  e+ +tv +  ++dtp+
  EHT98428.1 864 GfgEMQVTVNVEVARDTPY 882
                 2559999999999999985 PP

>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.2e-19   8.1e-16       1     110 []     221     334 ..     221     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 2.2e-19
                    EECCCEEEEEEEETC.SEEEEEEEEEEEEECSSSSCEEEEEEEEETTSTEEEEEEEEEEEESTT-EEEE....EEEEEES--BBECCCB--EEEEE CS
  Glyco_hydro_2   1 vhIedvfvttdlsdd.ksakvevevelendsdksvevtleteikdaegkkvkeessvlslgngetksik....lelevknpklWspetPnLYtlkv 91 
                    +hI+d++++t+++dd ++a++++ev++    d + +v+++   +   + +  ++s+  s++++e  + +    l+l v+np+lWs+etP+LY+++v
     EHT98428.1 221 THIRDLRIRTHFNDDfSRARLDAEVRVAGMLDDDSQVSIQL--FAGTELVGDATSPLGSAIVDERGAWNdrttLSLRVNNPALWSAETPHLYRAVV 314
                    7************************7777777777777754..44444444444444444444443333444589********************* PP

                    EE.EETTEEEEEEEEEE-B- CS
  Glyco_hydro_2  92 el.dkdgkvidevstrfGfR 110
                    +l ++dg+ i+    ++GfR
     EHT98428.1 315 QLhRADGTLIEAEACDVGFR 334
                    *******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 7232.19
//
Query:       EHT98429.1  [L=305]
Description: fructokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-66  223.4   0.0    4.3e-66  223.3   0.0    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   2.4e-70   4.3e-66       3     300 ..       4     298 ..       2     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 2.4e-70
                 EEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTS CS
        PfkB   3 kvvviGealidliavseklegelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedg 101
                 +v+++G+a++dl ++  +         ++ + aGGa+aNvAv++arl +++ fig+vGdD+fG+f+ ++l++e+v+t+y+  d  +rt++ ++ +d +g
  EHT98429.1   4 RVWCLGDAVVDLLPDGPG---------HLIQCAGGAPANVAVGIARLQGKSGFIGRVGDDPFGHFMQQTLASEQVETAYMTLDSAHRTSTVVVALDHEG 93 
                 789999999999999766.........999******************************************************************99* PP

                 EEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHH...HHHHHHHHHCTESEEEEEHHH CS
        PfkB 102 ertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggt..fdpnlldplgaq...fkeallellaladllkpneeE 193
                 er+++f   ++adl  e+   d++ ++ +++l+ ++  l  ++++++++++++ + ++gg+  fdpn++ +l+ +    ++++ ++l+ ad++k++eeE
  EHT98429.1  94 ERSFTFMVRPSADLFLEQ--GDLPPFQPGEWLHCCSiaLAAEPSRSTTFTAMQRISEAGGYvsFDPNIRHDLWRDdaqLRDCVNRALQRADVVKLSEEE 190
                 ****************85..6****************************************************************************** PP

                 HHHHHTSCTHSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHT......THHHHHHHHHHHHH CS
        PfkB 194 lealtgekledieealaalhklkakga.ktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaalle......gksleealrfanav 285
                 l++lt+e+  +  + l++l +   ++a +++ vt+Gk G+ v +++++++ p++p v  vDttGAGD+fv+g+l +l+e      + +l+ +l  a+ +
  EHT98429.1 191 LAFLTEEA--QGGDSLQMLAE---RYAiSLLMVTQGKAGVKVWHQGQHYHYPTLP-VVSVDTTGAGDAFVAGLLWGLAEkglptnETELAACLTSAQQC 283
                 ********..77788888877...6777*************************88.99***************************************** PP

                 HHHHHTSSSSSTCSC CS
        PfkB 286 Aalvvqkkgaiaslp 300
                 +al+++ kga+++lp
  EHT98429.1 284 GALATTAKGAMTALP 298
                 ***********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2209.35
//
Query:       EHT98430.1  [L=287]
Description: putative glutathionylspermidine-utilizing glutathione transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-10   38.5   0.1      2e-09   37.3   0.1    1.6  1  GST_C_2          Glutathione S-transferase, C-terminal domain
    1.1e-09   38.4   0.1    1.9e-09   37.6   0.1    1.5  1  GST_C            Glutathione S-transferase, C-terminal domain
    5.9e-06   26.5   0.0    2.2e-05   24.7   0.0    2.1  2  GST_N            Glutathione S-transferase, N-terminal domain
    6.3e-06   26.3   0.1    1.1e-05   25.5   0.1    1.4  1  GST_C_3          Glutathione S-transferase, C-terminal domain
    0.00024   21.3   0.0    0.00079   19.7   0.0    1.9  2  GST_N_2          Glutathione S-transferase, N-terminal domain
     0.0017   18.7   0.0     0.0042   17.5   0.0    1.7  1  GST_N_3          Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.056   13.2   0.0        0.1   12.4   0.0    1.5  1  GST_C_6          Glutathione S-transferase, C-terminal domain
       0.09   12.9   0.0        0.2   11.8   0.0    1.6  1  Cyc-maltodext_C  Cyclo-malto-dextrinase C-terminal domain
       0.11   12.5   2.2       0.28   11.2   2.2    1.6  1  Cuticle_2        Cuticle protein 7 isoform family


Domain annotation for each model (and alignments):
>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1     1e-12     2e-09      10      68 ..     182     244 ..     173     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1e-12
                 HCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS-....---TT-HHHHHHHH CS
     GST_C_2  10 qldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf....direaypnlraWle 68 
                 ++++ +d+l+++La  ++l+Gd  t+aDia +p+++ +  + ++        ++y+n+++W +
  EHT98430.1 182 EAKRQFDVLDRQLANNRYLAGDDYTIADIATWPWYGSMVLYNQYNaaefLDLQSYKNVVRWAK 244
                 678899********************************999776667544449********75 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   9.8e-13   1.9e-09      30      93 .]     182     250 ..     144     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 9.8e-13
                 HHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH....HHHHHTTTTT...TTTSHHHHHHHHHHHTSH CS
       GST_C  30 kvaevlsaleeelkkqdylvGdkltlADialvpiln....wlqrlglafg...qekfpnlkawlerimarp 93 
                 + ++++++l+ +l+++ yl+Gd +t+ADia  p+      ++q      +    + ++n+ +w ++i++rp
  EHT98430.1 182 EAKRQFDVLDRQLANNRYLAGDDYTIADIATWPWYGsmvlYNQYNAA--EfldLQSYKNVVRWAKEIAQRP 250
                 6789******************************9996434444444..2559*****************9 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.1e-08   2.2e-05      12      76 .]      53     127 ..      43     127 .. 0.79
   2 ?   -3.7   0.0       7.9   1.6e+04      39      54 ..     224     239 ..     222     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.1e-08
                 HTHHHHHHHHH......HTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET....TEEEESHHHHHHHHHH CS
       GST_N  12 prahrirllla......akgveyevvpldfeageekspellklnplgkvPaLedn....gkkltESraIleYiar 76 
                 p+  ++ +ll+        ++ey    ++ ++g +  + ++++np+ k+PaL d+       ++ES+ Il Y+a+
  EHT98430.1  53 PNGQKVTILLEellalnVNDAEYDAWLINIGEGDQFTSGFVDINPNSKIPALSDHsatpPIRVFESGNILLYLAE 127
                 55555555555433222778899999999**************************9988899***********95 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.9
                 CGGCHHHHHHCTTS-S CS
       GST_N  39 eekspellklnplgkv 54 
                 + +++e+l+l+++++v
  EHT98430.1 224 QYNAAEFLDLQSYKNV 239
                 4566899999888776 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   5.7e-09   1.1e-05      19      92 ..     173     252 ..     161     254 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.7e-09
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.......TCC..CC-HHHHHHHHHHHTSHHH CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.......eal..kkfpklkalyervearpki 92 
                 e + + +  ++++ ++++++ l+  ++ yl+gd  T+AD+a + +   +            l  ++++++ ++ +++++rp++
  EHT98430.1 173 EYAINRFSLEAKRQFDVLDRQLA--NNRYLAGDDYTIADIATWPWYGSMVLYnqynaaeF-LdlQSYKNVVRWAKEIAQRPAV 252
                 55555566678899*********..999************88774433333333445542.2469****************97 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     4e-07   0.00079      23      69 ..      78     127 ..      52     128 .. 0.68
   2 ?   -2.7   0.0         4   7.9e+03      14      33 ..     200     219 ..     198     233 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4e-07
                 EEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE...EEESHHHHHHHHHH CS
     GST_N_2  23 vvvlepkgfekseefprlnprgtVPvLwdkdgq...vineSseIlrylet 69 
                 +++   +g++ ++ f ++np+ ++P+L d+ ++    + eS  Il yl++
  EHT98430.1  78 WLINIGEGDQFTSGFVDINPNSKIPALSDHSATppiRVFESGNILLYLAE 127
                 33445566777788****************888866666*********87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
                 HCT--EEEEEEH...-TTSH CS
     GST_N_2  14 lkglediisvvvlepkgfek 33 
                 l g +++i  +  +p++ + 
  EHT98430.1 200 LAGDDYTIADIATWPWYGSM 219
                 56667888888776666544 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0042       8      72 ..      53     130 ..      47     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHT-......-EEE..E---TTTT.HHHHHHH-TT--SSEEETT.S-...EEESHHHHHHHHHHHH- CS
     GST_N_3   8 pyarrvrlaLnekgl......pvev..vevtpgeh.deellaknplgkvPvLedd.ge...altdSlaIidyLeelyp 72 
                 p+ ++v ++L+e+        ++     ++ +g+     +  +np+ k+P+L d  ++    +++S  I+ yL e+y+
  EHT98430.1  53 PNGQKVTILLEELLAlnvndaEYDAwlINIGEGDQfTSGFVDINPNSKIPALSDHsATppiRVFESGNILLYLAEKYG 130
                 8888888888775332333212332224555777767889************988566899999************97 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05       0.1       1      63 [.     183     245 ..     183     246 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
     GST_C_6   1 akkdleaLselLgdkkyFfGdkPtslDAlvFGhl.aqilytplespelrellk..eypNLvaycer 63 
                 ak+ +++L   L+++ y+ Gd+ t +D + +     ++ly  ++    +e+l   +y+N v++++ 
  EHT98430.1 183 AKRQFDVLDRQLANNRYLAGDDYTIADIATWPWYgSMVLYNQYN---AAEFLDlqSYKNVVRWAKE 245
                 68999***************99******9998773444444433...4677777788888888765 PP

>> Cyc-maltodext_C  Cyclo-malto-dextrinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001       0.2       2      49 ..     165     245 ..     164     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
  Cyc-maltodext_C   2 khfaPedgvYvyfRya.ddek................................vmvilNknekavtldlnryaevlngkkk 49 
                       h+aPe+  Y++ R + + ++                                 mv++N+ ++a  ldl+ y++v++ +k+
       EHT98430.1 165 YHYAPEKIEYAINRFSlEAKRqfdvldrqlannrylagddytiadiatwpwygSMVLYNQYNAAEFLDLQSYKNVVRWAKE 245
                      69****99******995544234444444444445555555666666677777*********************9877664 PP

>> Cuticle_2  Cuticle protein 7 isoform family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.2   0.00014      0.28      30      48 ..     151     169 ..     145     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
   Cuticle_2  30 kGkapfyGfGfeypyhyyp 48 
                 +G ap+ G Gf + yhy p
  EHT98430.1 151 QGSAPYLGGGFGHFYHYAP 169
                 799**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2228.42
//
Query:       EHT98431.1  [L=97]
Description: uncharacterized DUF1330 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-24   86.2   0.1    1.6e-24   86.0   0.1    1.0  1  DUF1330   Domain of unknown function (DUF1330)
     0.0059   17.0   0.0     0.0076   16.6   0.0    1.2  1  YCII      YCII-related domain
  ------ inclusion threshold ------
      0.096   13.9   0.1       0.14   13.3   0.1    1.5  1  EthD      EthD domain


Domain annotation for each model (and alignments):
>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   2.7e-28   1.6e-24       1      94 []       2      95 ..       2      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 2.7e-28
     DUF1330  1 kaYwiaqv.kvtdpeaykeYaalaeaalakyggrflvrggkvevlEGdeeptrlvvieFpsveaarawyeSpeYqaakalRqaaaeadlvlvegv 94
                +aY+++   +  +++++++Ya++a++a   +  + l+  g+ e+lEG  e++ +v+ieFp  eaa+awy+SpeYqaak++R + a+ +++lv+gv
  EHT98431.1  2 SAYVVFIRdNTLNQDEMAAYAEKAGKARGDHPIKPLAFYGELETLEG-PEAEGVVIIEFPTTEAAHAWYDSPEYQAAKQHRLKGANYRVLLVKGV 95
                69***9998999***********************************.999*****************************************996 PP

>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-06    0.0076      23      77 ..      17      71 ..       3      82 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                HHHHHHHHHHHTTGEEEE.........EEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT CS
        YCII 23 ahlayleelkkeGvllaa.........GpklvidGpfaetkeqlgGfyiveaadldeaieiaar 77
                ++ ay e+  k+               G+ ++ +Gp ae      G++i+e+++ ++a+++ + 
  EHT98431.1 17 EMAAYAEKAGKARG---DhpikplafyGELETLEGPEAE------GVVIIEFPTTEAAHAWYDS 71
                44444443333322...1333566667***********7......****************864 PP

>> EthD  EthD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05      0.14      52      82 ..      47      77 ..       8      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                C--SEEEEEEEEESSHHHHHHHHCSHHHHH. CS
        EthD 52 sdadyDgiaelwfdsleaflaafadpeyaav 82
                + ++  g++ + f++ ea+ a++++pey+a+
  EHT98431.1 47 EGPEAEGVVIIEFPTTEAAHAWYDSPEYQAA 77
                668889***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 883.97
//
Query:       EHT98432.1  [L=478]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-39  132.9  18.6    9.6e-39  132.9  18.6    2.7  2  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    0.00014   22.0  18.7     0.0011   19.1   0.5    4.3  4  DUF948         Bacterial protein of unknown function (DUF948)
  ------ inclusion threshold ------
       0.29   11.3   3.4        1.3    9.2   3.4    2.1  1  SPC12          Microsomal signal peptidase 12 kDa subunit (SP
        1.5    8.5   5.2       0.39   10.4   2.0    1.6  2  IFT46_B_C      Intraflagellar transport complex B protein 46 
        1.7    7.6  14.4       0.08   11.9   4.9    2.2  2  Vps53_N        Vps53-like, N-terminal
          3    7.1   7.1         22    4.2   7.1    2.0  1  Lipoprotein_7  Adhesin lipoprotein
        5.8    7.5  10.8        4.7    7.8   4.7    2.9  2  Syntaxin-6_N   Syntaxin 6, N-terminal
        6.3    6.1  14.7        3.4    7.0   7.0    2.5  2  GAS            Growth-arrest specific micro-tubule binding
        8.5    6.1  13.8        2.2    8.0   2.4    3.0  3  DUF932         Domain of unknown function (DUF932)
        9.7    6.9  11.4        6.7    7.4   0.6    3.1  4  YabA           Initiation control protein YabA


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.052        94      89     135 ..     228     274 ..     171     284 .. 0.60
   2 !  132.9  18.6   5.3e-42   9.6e-39       2     170 ..     288     442 ..     287     445 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.052
                 HHHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHH CS
   MCPsignal  89 keiealiieiqkeindsvesleetrqrveegselveetgealkeive 135
                 +++++ ++e+ +e+++ ++      qr++e ++  + +++a+++i++
  EHT98432.1 228 NQVSHGVAELLQESDSMLSRNAALSQRTDEQAQALDVATSAMSQISA 274
                 33344444444444444444444444444444555555555554444 PP

  == domain 2  score: 132.9 bits;  conditional E-value: 5.3e-42
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 dla+e+++ A++g+++++++++ m +i+ +s  ++ i+e id+ia+QTN+L LNA++EAARAG++GrGFaVVA+EVr+LA r  +aa+ei++l+     
  EHT98432.1 288 DLARETRQVASKGQENIQQAMHSMAQINVESGRVKTILELIDGIAFQTNILSLNASVEAARAGQEGRGFAVVASEVRTLALRCENAAREIRQLM----- 381
                 799******************************************************************************************9..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                          + + + + +g+ +v++++++++ i  +++++++lv+e++  s +q +si +++q+++ +++
  EHT98432.1 382 ---------DASSSSAGQGTVQVDQAAQTMQAIHVSIDSLSQLVSELSEMSVQQNQSIAQIQQSISSIDH 442
                 .........88999999*************************************************9986 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   6.3e-07    0.0011      22      84 ..     214     276 ..     209     279 .. 0.93
   2 ?    2.3   0.2      0.11     2e+02      32      79 ..     283     330 ..     275     341 .. 0.75
   3 !    6.8   5.8    0.0045       8.1      28      85 ..     395     456 ..     355     460 .. 0.86
   4 !    5.7   2.6    0.0098        17      24      76 ..     419     471 ..     414     473 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.3e-07
      DUF948  22 lklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 +  ++tl  ++ t++++ + v ++l+e++ +l+   +l +   e+ +++d  t+a+ +++++ 
  EHT98432.1 214 RTFSQTLGTMRGTLNQVSHGVAELLQESDSMLSRNAALSQRTDEQAQALDVATSAMSQISAAA 276
                 567899******************************************************985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
      DUF948  32 aatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 a+t  +l ++++++  + ++ ++++   ++++n ++ +v+++ e +  
  EHT98432.1 283 AQTACDLARETRQVASKGQENIQQAMHSMAQINVESGRVKTILELIDG 330
                 566667777777777777777888888899999999999998876665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0045
      DUF948  28 ldeaaatieele...kqvdpilkevedllakvnelledvneklekvdplte.avadlgesvs 85 
                 +d+aa+t++ +    + + +++ e+ ++  + n+  +++++ + ++d+ ++ +v++++e+++
  EHT98432.1 395 VDQAAQTMQAIHvsiDSLSQLVSELSEMSVQQNQSIAQIQQSISSIDHSVQhNVKHVTETLQ 456
                 788899999998666777778889999999*****************866526888888865 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0098
      DUF948  24 lkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdpltea 76 
                 l+++  + +++i+++++ + +i + v+  +++v e+l+  +++ ++  +l +a
  EHT98432.1 419 LSEMSVQQNQSIAQIQQSISSIDHSVQHNVKHVTETLQVAQQQRQQAGALQQA 471
                 55555667888999999999999999999999999888888888877776665 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4    0.0007       1.3       7      51 ..      19      63 ..      15      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0007
       SPC12  7 klaekllqvilvlsaviafivGyitqdlkltlyillagvvltllv 51
                k a++l+ ++ ++ +vi+ ivG ++q+  l++ ++ a +++++lv
  EHT98432.1 19 KQADRLIVMLCWALVVISAIVGSLYQSTWLAITVGTALALVATLV 63
                5788999999999*************9888888887777777766 PP

>> IFT46_B_C  Intraflagellar transport complex B protein 46 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.2   3.9e+03     110     128 ..     296     314 ..     248     331 .. 0.56
   2 ?   10.4   2.0   0.00022      0.39      90     164 ..     378     451 ..     358     475 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
                 XXXXXHHHHHHHHHHHHHH CS
   IFT46_B_C 110 naeknpkkidkWiedieel 128
                  a+k +++i++ +++++++
  EHT98432.1 296 VASKGQENIQQAMHSMAQI 314
                 2334444444444444443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00022
                 XXXXXXXXXX.XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHH-TT----SS----TTGGGS---HHHHHHHTT- CS
   IFT46_B_C  90 revskksaakekskvvksienaeknpkkidkWiedieelhkkkppptveyskkmpdieelmqewpeefeealkkv 164
                 r+ +  s+++  + +v ++++a+++ ++i+  i+++++l ++ ++ +v+++++  +i++ ++  ++++++ +k+v
  EHT98432.1 378 RQLMDASSSSAGQGTV-QVDQAAQTMQAIHVSIDSLSQLVSELSEMSVQQNQSIAQIQQSISSIDHSVQHNVKHV 451
                 5555555555444555.899999*******************************************999988854 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   2.0     0.099   1.8e+02      22      91 ..     222     290 ..     215     348 .. 0.61
   2 ?   11.9   4.9   4.4e-05      0.08      32     109 ..     375     452 ..     361     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.099
     Vps53_N  22 nidelikklqeeikklddeiksvvraqanvgekgk...ealeeaqkaieelfqkikeikdkaekseemvkeit 91 
                  +  +++++   + +l +e  s+   +a  ++++    +al+ a++a+++++   +  +dka+ +       +
  EHT98432.1 222 TMRGTLNQVSHGVAELLQESDSMLSRNAALSQRTDeqaQALDVATSAMSQISAAASLARDKAQTACDL----A 290
                 55556677777777776666666666666666654111677788888888877777777777654333....3 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.4e-05
     Vps53_N  32 eeikkl.ddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiAKknlttsiT 109
                  ei++l d++  s+ ++     +++ + ++ ++ +i +l+q ++e+ + + + ++++ +i + I+ +D+  ++  + +T
  EHT98432.1 375 REIRQLmDASSSSAGQGTV-QVDQAAQTMQAIHVSIDSLSQLVSELSEMSVQQNQSIAQIQQSISSIDHSVQHNVKHVT 452
                 5777761444445555544.55667899****************************************98765444443 PP

>> Lipoprotein_7  Adhesin lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.1     0.012        22      74     177 ..     345     456 ..     243     471 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
  Lipoprotein_7  74 eatksfkeagsygdypaiisklsaavenaksekkavddknakia.......kelaernakiqsnieelkklskeafelsktvektiaevekkf.ki 161
                    ea+++ +e   ++   + +  l+   ena  e +++ d+ +  a        + a+  + i  +i+ l +l  e +e+s   +++ia++++ +  i
     EHT98432.1 345 EAARAGQEGRGFAVVASEVRTLALRCENAAREIRQLMDASSSSAgqgtvqvDQAAQTMQAIHVSIDSLSQLVSELSEMSVQQNQSIAQIQQSIsSI 440
                    444444444444444444555555566666665555555555556666666667777777778888888888888888888888888887765247 PP

  Lipoprotein_7 162 ekdfkeklesfiddll 177
                    +++ + +++ + + l+
     EHT98432.1 441 DHSVQHNVKHVTETLQ 456
                    7777777766666654 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4      0.17   3.1e+02      14      71 ..     220     283 ..     210     314 .. 0.60
   2 ?    7.8   4.7    0.0026       4.7       3      78 ..     356     435 ..     355     474 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.17
  Syntaxin-6_N  14 lnkaeslyrrw....erlledtss..stseeldetrteLrkalrsiewdledLeetvriveknp 71 
                   l ++++++++      +ll++++s  s++  l++ ++e  +al+ +   ++++  + + ++ + 
    EHT98432.1 220 LGTMRGTLNQVshgvAELLQESDSmlSRNAALSQRTDEQAQALDVATSAMSQISAAASLARDKA 283
                   5555555555544444555555555667888888888888888888888777777775555443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0026
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtsss......tseeldetrteLrkalrsiewdledLeetvriveknpskfkide 78 
                   F +v++eV+  + ++e+  r+ ++l++ +sss      + ++  +t++ ++ +++s+++ +++L e    v++n+s  +i++
    EHT98432.1 356 FAVVASEVRTLALRCENAAREIRQLMDASSSSagqgtvQVDQAAQTMQAIHVSIDSLSQLVSELSEMS--VQQNQSIAQIQQ 435
                   88999999999999999999999999988885688888677777777777777777777777777665..555544444433 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.9     0.025        45     141     184 ..     245     288 ..     214     313 .. 0.78
   2 ?    7.0   7.0    0.0019       3.4      96     168 ..     393     465 ..     358     471 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.025
         GAS 141 glknllLekklkalqeelEkkeaqleevlaaanldpaalsavse 184
                   +n  L ++ ++  ++l+ ++  ++++ aaa+l  ++++++  
  EHT98432.1 245 LSRNAALSQRTDEQAQALDVATSAMSQISAAASLARDKAQTACD 288
                 46899999999999999999999999999999999888887654 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0019
         GAS  96 elekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqleev 168
                 ++ ++  ++ +  +v  + ++++ +e  e++ +++++i ++qq ++     ++  +k+++e+l+ +++q +++
  EHT98432.1 393 VQVDQAAQTMQAIHVSIDSLSQLVSELSEMSVQQNQSIAQIQQSISSIDHSVQHNVKHVTETLQVAQQQRQQA 465
                 556667777777888889999********************************************99998875 PP

>> DUF932  Domain of unknown function (DUF932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.4      0.13   2.3e+02     113     173 ..     225     285 ..     220     297 .. 0.79
   2 ?    2.9   0.2     0.044        79     120     154 ..     292     326 ..     280     336 .. 0.81
   3 ?    8.0   2.4    0.0012       2.2     112     177 ..     392     457 ..     385     473 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
      DUF932 113 akvieakkaLglvveefeefeeeaealaavklteaeaeafaeavlpepkeaaeerkkrala 173
                   ++++++   + ++e++ +  + +al++++ ++a+a ++a +++++ + aa+  +++a+ 
  EHT98432.1 225 GTLNQVSHGVAELLQESDSMLSRNAALSQRTDEQAQALDVATSAMSQISAAASLARDKAQT 285
                 556677777779999**************************99999888777766664444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.044
      DUF932 120 kaLglvveefeefeeeaealaavklteaeaeafae 154
                 ++ + + +  e+++++++ +a++++++  +++++e
  EHT98432.1 292 ETRQVASKGQENIQQAMHSMAQINVESGRVKTILE 326
                 43447889999****************99999887 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0012
      DUF932 112 dakvieakkaLglvveefeefeeeaealaavklteaeaeafaeavlpepkeaaeerkkralaalal 177
                 + +v++a+++++ ++ +++ + + + +l+++++++++  a +++ +++ +++ +++ k+ +++l+ 
  EHT98432.1 392 TVQVDQAAQTMQAIHVSIDSLSQLVSELSEMSVQQNQSIAQIQQSISSIDHSVQHNVKHVTETLQV 457
                 56899**************************************99998888888877744444433 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6    0.0037       6.7      12      53 ..     215     271 ..     210     317 .. 0.63
   2 ?   -1.1   0.0       1.7     3e+03      27      51 ..     300     324 ..     275     351 .. 0.68
   3 ?   -0.8   0.0       1.4   2.5e+03      41      76 ..     368     405 ..     358     418 .. 0.55
   4 ?    2.5   3.9      0.13   2.3e+02       5      57 ..     414     460 ..     392     474 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...............X CS
        YabA  12 eleeqleelleeleelkeelaelleenaeLeleneklrerl...............e 53 
                 +++++l+++  +l+++ + +aell+e +++   n  l +r                +
  EHT98432.1 215 TFSQTLGTMRGTLNQVSHGVAELLQESDSMLSRNAALSQRTdeqaqaldvatsamsQ 271
                 466777777777777777777777777777777777777773322222444444440 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  27 lkeelaelleenaeLeleneklrer 51 
                  +e++++ ++  a++++e  ++++ 
  EHT98432.1 300 GQENIQQAMHSMAQINVESGRVKTI 324
                 3455555555566666666555555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
                 HHHHH..HHHHHHHXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA  41 Lelen..eklrerleeeekkekekkkelsegkenLarl 76 
                 L++en  +++r++++ +++++ + + +++++ + ++ +
  EHT98432.1 368 LRCENaaREIRQLMDASSSSAGQGTVQVDQAAQTMQAI 405
                 55555223567777444444444444444444444433 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeek 57 
                 +l+++l+e++ q ++  +++++  +++ + +++n       +++ e+l+ +++
  EHT98432.1 414 QLVSELSEMSVQQNQSIAQIQQSISSIDHSVQHN------VKHVTETLQVAQQ 460
                 2333444444444444444444444444444444......4444444422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2429  (0.135479); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.23s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 3440.59
//
Query:       EHT98433.1  [L=310]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-43  146.2   2.8    1.4e-42  145.5   2.8    1.3  1  LysR_substrate  LysR substrate binding domain
    5.8e-18   64.6   2.9    5.8e-18   64.6   2.9    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0012   18.6   1.5      0.003   17.3   1.5    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   14.9   0.3      0.037   13.6   0.3    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.021   14.7   0.2      0.057   13.3   0.2    1.7  1  Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain o
      0.089   12.9   0.7       0.29   11.3   0.2    2.1  2  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   2.8   4.6e-46   1.4e-42       3     208 ..      97     301 ..      95     302 .. 0.94

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 4.6e-46
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     +lrg+L+i a+  ++r++++p +++f+ar+P++ l+l+ ++  + l+ l+++ +D+ ir g+p+ds+l+ar+L ++p+vl++sp+++  +g p s
      EHT98433.1  97 QLRGTLNINASFGFGRRHIAPCVSAFAARHPHLALSLQLSS--QPLNFLDAH-VDIDIRVGEPPDSRLIARKLVQNPRVLCCSPGYAAKHGLPDS 188
                     79***************************************..****99999.*********************************666699*** PP

                     GGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEET CS
  LysR_substrate  98 ledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrk 189
                     +++La++++ill+++ +    ++l    ++  +k+r+ l +n+ e ++++++ G Gi l + + +++++a+g+l   +lp++ +p  ++++v+++
      EHT98433.1 189 IRALAQHNCILLRQHDSdfALWRLVSGAENLSQKVRGNLVTNDGEVAMRMALDGHGILLRSWWDAKHSIAAGELL-HVLPAWHAPdGDIFAVWQA 282
                     ************99999774444444557779999****************************************.******9999********* PP

                     TCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflreal 208
                     +r++++++ af+ fl+e+l
      EHT98433.1 283 QRQPPARISAFVTFLQENL 301
                     ****************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   2.9     2e-21   5.8e-18       3      60 .]      14      71 ..      12      71 .. 0.97
   2 ?   -2.9   0.1       2.4   7.1e+03      33      41 ..      83      91 ..      80      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 2e-21
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +l  f+ va   s+t+AA+eLgls +avs+++++LE++lgv+L+ Rt+r+l+LT++G+
  EHT98433.1 14 DLVFFLRVASLDSLTAAARELGLSLAAVSKRLSQLEQRLGVQLLRRTTRRLELTPEGR 71
                7999*****************************************************7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
                HHHHHHHHH CS
       HTH_1 33 qikrLEeel 41
                q+++LEe++
  EHT98433.1 83 QLAALEEAV 91
                788888865 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.5     1e-06     0.003      14      53 ..      26      66 ..      19      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
                -HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT.SHHHHHHH CS
      HTH_30 14 nisatAkaLhvHrnTlryRLrrieellgldld.dpddrlaL 53
                +++a+A++L+++   +++RL ++e+ lg+ l  ++ +rl+L
  EHT98433.1 26 SLTAAARELGLSLAAVSKRLSQLEQRLGVQLLrRTTRRLEL 66
                799***************************66157777766 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   1.2e-05     0.037      24      43 ..      31      50 ..      26      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
      HTH_24 24 AerlglSpstvnrrlkrLee 43
                A++lglS+++v++rl +Le+
  EHT98433.1 31 ARELGLSLAAVSKRLSQLEQ 50
                9*****************97 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.9e-05     0.057      25      45 .]      32      52 ..      22      52 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                    HHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 25 qaLtqkLeavtkRlealEnkl 45
                    + L   L+av+kRl +lE +l
      EHT98433.1 32 RELGLSLAAVSKRLSQLEQRL 52
                    445556************996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   9.6e-05      0.29       9      45 ..      21      58 ..      18      63 .. 0.83
   2 ?   -3.0   0.0       2.9   8.6e+03      13      21 ..     185     195 ..     179     196 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.6e-05
      HTH_28  9 laaGhsvreaArelgisrrtvyrWikryee.gGiagLv 45
                +a+ +s ++aArelg+s   v++ ++++e+  G++ L+
  EHT98433.1 21 VASLDSLTAAARELGLSLAAVSKRLSQLEQrLGVQLLR 58
                6677899**********************978876665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
      HTH_28  13 h..svreaAre 21 
                    s+r++A++
  EHT98433.1 185 LpdSIRALAQH 195
                 24477777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2290.36
//
Query:       EHT98434.1  [L=356]
Description: putative dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-88  297.5   0.0    1.5e-88  297.3   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.3   0.0   8.1e-93   1.5e-88       2     348 .]       8     352 ..       7     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 297.3 bits;  conditional E-value: 8.1e-93
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE--.-THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS..SSSSSHHHHHHHHHHHTTEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevd.vGgaaidetgeplpeetleaikeadvvllgavgtpk..ekevrpengLlaLrkeldlfan 97 
                 ia+++gdgiG+evv++ ++v++aa+ek +  l++  +d +++++ +++g++lp++  + +k  d++ +gavg p+  + +v+   +Ll+ r+e+d ++n
  EHT98434.1   8 IAVIPGDGIGKEVVPEGIRVMNAAAEKFNIPLQWTWFDyASAEYWQQHGKMLPDDWFAELKTFDAIYFGAVGWPDivPDHVSLWGSLLQFRREFDQYVN 106
                 9****************************99999987526678899*****************************96666666669************* PP

                 EEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.H CS
      Iso_dh  98 lrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.l 195
                 lrpv+++   +vk pl +  ++++d+ +vRe+t+g Y+    ++    +++ev+++  ++++ +++ri ++af+lA++r+kk++t+ +K+n ++ +   
  EHT98434.1 107 LRPVRLM--PGVKAPLANRHPGDIDFYVVRENTEGEYSSVGGTMFPG-TEREVVIQETVMTRVGVDRILKFAFDLAQRRPKKHLTSATKSNGIAITMpY 202
                 *******..78999999999*********************999997.69999**************************************99999989 PP

                 HHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEET..SS-EEEEESS---CCCTTSS-S-THH CS
      Iso_dh 196 wrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslge..kkvaifEavHGsapdiagkdkaNpia 292
                 w + v+ + + +ypd+++++  +D  +++ v +p+ fdV+v++NlfGDilSD+  a +G +G++pSa++++  +   +fE+vHGsapdiagk++aNpi+
  EHT98434.1 203 WDNRVQAMQA-HYPDVKVDKYHIDILTANFVLHPDWFDVVVASNLFGDILSDLGPACTGTIGIAPSANINPegNFPSLFEPVHGSAPDIAGKNIANPIG 300
                 9999999998.************************************************************877789********************** PP

                 HHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 293 vilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                 +i   a+mL++ lg ++a d++ +A+e++l+a + +T+Dl+g+a    +t+++gda+
  EHT98434.1 301 QIWCGAMMLEH-LGYKAAGDAVLDAIERTLAAgEHLTRDLGGSA----NTQQLGDAI 352
                 ***********.********************8899********....******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2810.26
//
Query:       EHT98435.1  [L=443]
Description: putative polygalacturonase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-25   89.1   0.0    3.7e-25   88.7   0.0    1.1  1  Glyco_hydro_28   Glycosyl hydrolases family 28
    3.9e-06   26.8   0.0    0.00016   21.6   0.0    2.2  1  Beta_helix       Right handed beta helix region
     0.0017   18.3   0.0        0.2   11.5   0.0    2.3  2  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> Glyco_hydro_28  Glycosyl hydrolases family 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   6.3e-29   3.7e-25      47     240 ..      83     285 ..      36     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 6.3e-29
  Glyco_hydro_28  47 ngkd.divisgekitvlgisGkgtidGqGqawwdgkgkkk...kegkkkpkflvikkvknskiknlniknspvfhfsvesgkdltisditidasa 137
                     ++k  ++ + +    +l isGkg i+G+ +aw + +++++       + p+++v++++++ ++k+ ++  +p+ ++++ s+  ++i+++tid++ 
      EHT98435.1  83 AEKShNVLLYALGQRNLTISGKGRIEGDAEAWFAVEADEQgyrMPRADRPRMIVFEDCEQVTLKDFTLFQAPMWTVHLVSCRHVHIDHLTIDNAM 177
                     3444456677778899*********************998877788999********************************************** PP

  Glyco_hydro_28 138 gdhNtDgidvgsskgvtisntnikngDDciainsgsk.........nisitnvtcgg.GHGlSiGSvggrsdntVknvtvkdskvknsenGvRIK 222
                     + +NtD++d+ s++ v isn++ +  DD i i+   k         +i i+n+   +    + iG ++    ++V+++tv  + + +s+ G+ I 
      EHT98435.1 178 TLPNTDALDIDSCEAVLISNSYFSAADDAICIKTTLKpgslrrparRIAISNCLLRSdSCAIKIGTETW---DDVEDITVTGCSIFDSNRGIGIV 269
                     *********************************99989999****9******98865167899987765...59*******************98 PP

  Glyco_hydro_28 223 tikgatgtvsnvkyenik 240
                     +  g  g +  v ++ i+
      EHT98435.1 270 SRDG--GAIRRVLFSHIT 285
                     8775..455666666555 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.6e-08   0.00016       3     124 ..     135     274 ..     133     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.6e-08
                 EEE-SS-E.EEESEEEES-SS-SEEE-SSS-.EEES-EEES....-SS-SEEE-TT-S-EEES-EEE---.........SEEE-TT--S--EEES-EEE CS
  Beta_helix   3 isingssnvtiknntisnsggyGiylrgssnvvienneian....nsgsGiyilgssnntisnntisdnn.........gggialfgasnnlienneit 88 
                 i+++++++vt+k++t+  ++   ++l ++++v+i+  +i n     +++ ++i +++ + isn+++s              g   + a +  i+n+  +
  EHT98435.1 135 IVFEDCEQVTLKDFTLFQAPMWTVHLVSCRHVHIDHLTIDNamtlPNTDALDIDSCEAVLISNSYFSAADdaicikttlKPGSLRRPARRIAISNCLLR 233
                 889999999999999999999999999999999999888888888999999999999999999999877765555555434444446666666666666 PP

                 S-SS-SEE-TT.....-S--EEES-EEESTT.--SEE---TT CS
  Beta_helix  89 dnggsGiylny.....ssnntienNiidnna.gsGividdss 124
                   +   i + +      +++t++++ i + + g Giv +d++
  EHT98435.1 234 SDSC-AIKIGTetwddVEDITVTGCSIFDSNrGIGIVSRDGG 274
                 6644.4433333344477777777765444425555554444 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.3e-05       0.2       6      56 ..       7      55 ..       3     119 .. 0.85
   2 !    4.7   0.0     0.004        24     120     213 ..     158     265 ..     129     283 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.3e-05
                     GGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSE CS
  Pectate_lyase_3  6 dyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgv 56
                     d+    DG t dt a+q+ai ++ a+++g+   +P+  Y+ s++++l+s+ 
       EHT98435.1  7 DFHPAADGETPDTQALQRAI-DQIAEAGGGRLTLPPVRYR-SGSLNLPSNF 55
                     888899**************.7888888888778877776.4444555555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.004
                      -EEEEEEEEEEES-SSEEE-SSS---TT---SS--EEEEES-EEES-SS-SEEES...........-EEEEEES-EEE-....S--SEEE-TT- CS
  Pectate_lyase_3 120 ihwqtaqatslenvefemseasgtkhqgifiengsggflndlvfsglgdigiavg...........nqqftvrnitfnn....attgievlwgw 198
                      +h ++++ + +++ ++++      + + + i++ +   ++++ fs   d++i ++              ++++n+   +     + g+e+ ++ 
       EHT98435.1 158 VHLVSCRHVHIDHLTIDNAMTL-PNTDALDIDSCEAVLISNSYFSA-ADDAICIKttlkpgslrrpARRIAISNCLLRSdscaIKIGTETWDDV 249
                      4667777777777777555444.45666777777776667777777.55555553356677444433444444444444333333333332233 PP

                      E.EEEEEEEEESSSEE CS
  Pectate_lyase_3 199 g.wtlknvkinncegG 213
                      + +t+ +++i ++++G
       EHT98435.1 250 EdITVTGCSIFDSNRG 265
                      3455555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3249.70
//
Query:       EHT98436.1  [L=271]
Description: putative permease component of an ABC superfamily sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-24   84.4  19.9    8.1e-24   84.4  19.9    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.071   12.9   0.1      0.071   12.9   0.1    3.5  4  DUF2427       Domain of unknown function (DUF2427)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.6      0.59   5.3e+03     119     119 ..      28      28 ..       3      81 .. 0.45
   2 !   84.4  19.9   9.1e-28   8.1e-24       2     180 ..      81     262 ..      80     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.59
  BPD_transp_1 119 g 119
                   +
    EHT98436.1  28 M 28 
                   1 PP

  == domain 2  score: 84.4 bits;  conditional E-value: 9.1e-28
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   illGila+    + + +++kl+  +  +++ lPs +++i+l+  + ++ +l+++ l++i+  +  ++p+++l++++a++++pk+lveaa ++Gasr 
    EHT98436.1  81 ILLGILAGfgfAMLKIPGKKLVAAMLALGMVLPSEAFIIPLYHELHWM-GLTNTTLALILPQIALSLPFTTLMIASAFQQVPKELVEAAVMDGASRV 176
                   788899988888****************************99655555.888999999*************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilqrlld 180
                   +i++ +++P++ p+i t+++l f++ +++++++++l ++       +g+++++  +  d++    ++++ + i++++l+lv+ ++qr + 
    EHT98436.1 177 KILWGILVPAIWPTISTLALLLFIWTWNEFLIPLILVNKDElrtlpIGMMFFQNKNTIDIP----VLMAGAMIVIMPLILVFLFFQRKFI 262
                   *************************************988899999999999999999999....6778888888888888888887665 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8      0.19   1.7e+03      83     103 ..      10      30 ..       6      32 .. 0.73
   2 ?   -0.5   0.6      0.12   1.1e+03      30      66 ..      41      80 ..      34      94 .. 0.64
   3 ?   -1.1   0.1      0.18   1.6e+03      41      83 ..     130     172 ..     127     188 .. 0.68
   4 ?   12.9   0.1   7.9e-06     0.071      33      72 ..     221     260 ..     216     266 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.19
     DUF2427  83 klswillillavqvvlavllk 103
                  l w++ +l+++ +++a++++
  EHT98436.1  10 ALIWVVALLTIMPFLMAFMTS 30 
                 567888888888888888775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.12
     DUF2427 30 vvvyPvalvLslaksrw...ylpvqivnlvlavlglllgh 66
                v+ +P++l +++  + w   +  v ++n+vl+v+ ++l +
  EHT98436.1 41 VFTLPASLNIKNYVTAWqqgHFNVYFMNSVLVVIPVVLCS 80
                5666776666666655544456666666666666655544 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.18
     DUF2427  41 laksrwylpvqivnlvlavlglllghiykgstPelypnniyak 83 
                 l+++ ++l +  ++l l ++ l++++++++   el + ++   
  EHT98436.1 130 LTNTTLALILPQIALSLPFTTLMIASAFQQVPKELVEAAVMDG 172
                 5566666666777777778888888888877656777666555 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 7.9e-06
     DUF2427  33 yPvalvLslaksrwylpvqivnlvlavlglllghiykgst 72 
                 +P+++++   k  + +pv+++  +++++ l+l++++ +++
  EHT98436.1 221 LPIGMMFFQNKNTIDIPVLMAGAMIVIMPLILVFLFFQRK 260
                 8*********************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1956.50
//
Query:       EHT98437.1  [L=290]
Description: binding-protein-dependent transport systems inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-16   59.0  11.8    4.8e-16   59.0  11.8    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.045   13.6   0.0       0.13   12.1   0.0    1.8  1  3-alpha       3-alpha domain


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   6.1         2   1.8e+04      43      55 ..      42      67 ..       5      92 .. 0.43
   2 !   59.0  11.8   5.3e-20   4.8e-16      11     170 ..      94     278 ..      84     287 .. 0.84

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 2
  BPD_transp_1 43 f.............vilsilghlilp 55
                  +             ++++ + + +l+
    EHT98437.1 42 IsmpvfagvanylrMFSDPVFWIALG 67
                  03333333333333222222222222 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 5.3e-20
  BPD_transp_1  11 nrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                    rn++ + +lr+l+++++ +P+ vl++++ ++                      ++l++++++  +v ++++++++++ ++++ a+l+ ++ +l ea
    EHT98437.1  94 TRNNTERSVLRILFFLPYIMPMAVLGVVWRWLYkpafgpidqflravglpqlamSWLGDFTWALPAVGMVATWYFFGFCLVLFMAGLQRMDPSLLEA 190
                   68888999********************99777999************************************************************* PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseis......nggvlalviavlllnl 170
                   a ++G sr++ f +++lP + p +   l+l+++++l+++ l++ ++++++  +t+++++ ++++           +++++a+  ++++l +
    EHT98437.1 191 ADLDGSSRRRKFMRITLPGLRPELRIALLLTVIASLKAFDLVYVMTQGGPgTSTMVTNIFMYKQ-G--FdlhyfgYASSVAVFSMMIVLGI 278
                   *******************************************999776524444444333333.3..33357765555555555555544 PP

>> 3-alpha  3-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05      0.13       6      33 ..     121     149 ..     119     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
                 HHHHHHTS--.-HHHHHHHHTSTT--HHH CS
     3-alpha   6 vnallyhdkl.drealrrllelpaLspsW 33 
                 v++ ly + + +++++ r++ lp+L+ sW
  EHT98437.1 121 VWRWLYKPAFgPIDQFLRAVGLPQLAMSW 149
                 799************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2186.02
//
Query:       EHT98438.1  [L=199]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-06   27.4   0.0    1.2e-05   25.5   0.0    1.8  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.7e-05   24.1   0.0     0.0022   18.4   0.0    2.3  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0041   17.1   0.0      0.015   15.3   0.0    1.8  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.029   14.4   0.0    1.3  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.7e-09   1.2e-05      22     117 .]      47     184 ..      26     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.7e-09
                     HH.HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEE..............................................EEEES CS
  Acetyltransf_1  22 ee.feesfsleaegllvaeedgeliGfisllkipdekggvayie..............................................slaVs 69 
                     ++ ++ +    +++ +v e dge+ G++ +++++     +a +                                                +   
      EHT98438.1  47 AVpYARF---APNFAFVLEVDGEVMGYVVATPDTV--AFEAQLArdwwprlqekyrdrtpvapydskildsirqpepaaqalvtqwpahlHINLL 136
                     3344445...7779999***********6666666..222222244444444444445555555555556666666666666666666557788* PP

                     GGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  70 peyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     p  +  G G++++e+ +  +r+ g++ + l v+  n++ +++Y++lGF
      EHT98438.1 137 PPVQAGGWGRRMIEHELAALRNAGVRGVHLGVSLQNEQVCAFYQRLGF 184
                     ******************99999************************9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.02        90       5      24 ..      58      77 ..      52      99 .. 0.83
   2 !   18.4   0.0   4.9e-07    0.0022      33      75 ..     136     185 ..     106     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.02
                    EEEEEETTEEEEEEEEEEES CS
  Acetyltransf_7  5 vfVaeddgkivGfialslld 24
                     fV+e dg+++G+++++++ 
      EHT98438.1 58 AFVLEVDGEVMGYVVATPDT 77
                    589**********9998875 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.9e-07
                     -GGGTTSSHHHHHHHH..TT......SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  33 dpeyrgkGiGraLlea..ae......kgiile.qlelnaekaikfYeklGFe 75 
                     +p  +  G Gr+++e+  a+      +g+  +  + l++e+  +fY++lGF 
      EHT98438.1 136 LPPVQAGGWGRRMIEHelAAlrnagvRGV--HlGVSLQNEQVCAFYQRLGFS 185
                     6778889********85511445344454..3335565546677*******6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.55   2.5e+03      31      46 ..      56      71 ..      49      79 .. 0.80
   2 !   15.3   0.0   3.2e-06     0.015      61     109 ..     137     187 ..     128     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.55
  Acetyltransf_10 31 alllvaeeggkivGvi 46
                     ++ +v+e++g+++G++
       EHT98438.1 56 NFAFVLEVDGEVMGYV 71
                     5789999999999998 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.2e-06
  Acetyltransf_10  61 peyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkav 109
                      p  +  G g++++e+ +++++++g +  +l v  ++ +  +fY++lGF  +
       EHT98438.1 137 PPVQAGGWGRRMIEHELAALRNAGVRGvHLGVSLQNeQVCAFYQRLGFSHI 187
                      567888********************9*********9999********865 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.4e-06     0.029      27      81 ..     133     188 ..     117     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.4e-06
                 EEE-GGG-SSSHHHHHHHHHHHHHHHS-S-.EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  27 lqvlpehrrrGlgsrlvkalakeiaergkt.vllvvvasNtpsirlyeklGfekie 81 
                 + +lp ++  G+g+r+++   ++++++g   v l v  +N++ +++y++lGf  i 
  EHT98438.1 133 INLLPPVQAGGWGRRMIEHELAALRNAGVRgVHLGVSLQNEQVCAFYQRLGFSHIL 188
                 678999999********999999999885428899*****************9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1552.34
//
Query:       EHT98439.1  [L=372]
Description: ROK family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-37  127.5   0.0    9.2e-37  127.1   0.0    1.2  1  ROK            ROK family
      2e-06   27.3   0.7    7.2e-06   25.5   0.1    2.2  2  HTH_24         Winged helix-turn-helix DNA-binding
    8.2e-06   25.6   2.1    3.6e-05   23.6   0.3    2.5  2  MarR_2         MarR family
    1.2e-05   25.1   0.1    3.9e-05   23.5   0.1    1.9  2  MarR           MarR family
    0.00066   19.4   4.1     0.0063   16.3   0.2    3.3  3  HTH_IclR       IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   15.0   0.3      0.065   13.2   0.3    2.0  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.028   14.3   0.0      0.068   13.1   0.0    1.6  1  TrmB           Sugar-specific transcriptional regulator TrmB
        0.3   11.2   2.0        3.2    7.9   0.1    2.9  2  HTH_20         Helix-turn-helix domain
       0.33   10.8   3.4       0.26   11.1   0.4    2.4  3  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.0   4.6e-40   9.2e-37       2     270 ..      76     334 ..      75     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 4.6e-40
                 EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS-E CS
         ROK   2 igidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvpv 100
                 igi++ ++   + ++d +g+ l +++++     t+  l da+a ++   e+k   ++a+g+++ Gl++ ++g+ +  + ++wen+++++ le+r+ +pv
  EHT98439.1  76 IGIQLNAERNLIVMTDLSGNLLGEQQMP-AGAITPRQLGDALARFLRGVEEKH--VGAIGLALSGLVDAENGYCIRSKVLDWENVPIAQLLETRFSLPV 171
                 677777778888999************3.3456778899**********8855..89****************************************** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTCCGTTS-HHH CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqqkgekleake 199
                 ++enD+na+a+a  vfg+   +++ +++t g G+GaG+i+n +l++Gr+G age+G   + +       G+   lE +as ra+ +r+ q +e+ ++  
  EHT98439.1 172 FIENDANAMAMATMVFGQLGHAQSAVIATYGKGIGAGIILNRRLYRGRHGKAGEIGNGLVGD-------GSMRLLEDVASSRAILQRVAQDEEGGPLTL 263
                 ********************************************************888765.......68899****************666655433 PP

                 HHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT CS
         ROK 200 iiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpv 270
                    l ++  +   +++e+ ++ l++++a+l +++dp+ + l+ +   a ++l + i +++++y +k  ++  
  EHT98439.1 264 -QALDQRPTSDVLAALEEAGRELGISLANLSVAYDPDIVYLAMEPHMASRILlDHITQSFQAYRLKLTPHMT 334
                 .33455556677889***************************99888877777*******999777666554 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   3.6e-09   7.2e-06       7      48 .]       9      50 ..       7      50 .. 0.97
   2 ?   -2.4   0.0       1.8   3.7e+03      25      34 ..     283     292 ..     279     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.6e-09
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +IL+l+ +++ isq++L  r+glS stv++  +rL  +G+++
  EHT98439.1  9 RILRLIVEHAPISQSDLKVRSGLSMSTVSQATNRLLAQGIVQ 50
                8***************************************95 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
      HTH_24  25 erlglSpstv 34 
                 ++lg+S++++
  EHT98439.1 283 RELGISLANL 292
                 789**99876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.3   1.8e-08   3.6e-05       8      53 ..       8      51 ..       4      58 .. 0.93
   2 ?    0.7   0.1      0.25     5e+02      13      39 ..     265     293 ..     261     295 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.8e-08
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                ar+L  +  + +  +++++l  r gls s+vs++ +rL a+G v++
  EHT98439.1  8 ARILRLIVEHAP--ISQSDLKVRSGLSMSTVSQATNRLLAQGIVQE 51
                89**********..****************************9965 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.25
                 HHHCTTTSEE..EHHHHHHHHTSSHHHHH CS
      MarR_2  13 aLgrrpgrdl..tvgelarrlglsksavs 39 
                 aL  rp  d+  +  e  r+lg+s +++s
  EHT98439.1 265 ALDQRPTSDVlaALEEAGRELGISLANLS 293
                 56666666555566777777777766655 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1     2e-08   3.9e-05       7      48 ..       9      50 ..       5      52 .. 0.95
   2 ?   -2.8   0.0       3.3   6.5e+03      34      45 ..     271     282 ..     267     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2e-08
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                +iLr++ e+ p+s+s+L  ++g+s stv+ ++ rL  +G ++
  EHT98439.1  9 RILRLIVEHAPISQSDLKVRSGLSMSTVSQATNRLLAQGIVQ 50
                89*************************************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
                 HHHHHHHHHHTT CS
        MarR  34 vtrvldrLekkG 45 
                 ++ vl +Le++G
  EHT98439.1 271 TSDVLAALEEAG 282
                 688999999988 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   3.1e-06    0.0063       5      50 ..       7      51 ..       5      53 .. 0.94
   2 ?    2.6   0.1     0.061   1.2e+02       7      22 ..     273     288 ..     271     293 .. 0.86
   3 ?   -1.1   0.1      0.82   1.6e+03       7      18 ..     357     368 ..     357     372 .] 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
                HHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  5 alaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                +++iL+++ e+++  + s+l  r+gl+ Stv+  ++ L  +G+v+ 
  EHT98439.1  7 TARILRLIVEHAP-ISQSDLKVRSGLSMSTVSQATNRLLAQGIVQE 51
                689**********.8****************************985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.061
                 HHHCT-CTTBSS-BHH CS
    HTH_IclR   7 aiLdalaeapqeltls 22 
                 ++L al+ea++el++s
  EHT98439.1 273 DVLAALEEAGRELGIS 288
                 79**********9775 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.82
                 HHHCT-CTTBSS CS
    HTH_IclR   7 aiLdalaeapqe 18 
                 ++Ld+la+++ e
  EHT98439.1 357 MLLDLLAAQADE 368
                 58*****99887 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   3.2e-05     0.065      20      58 ..      18      58 ..       6      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET.EEEE CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglis.rg.rrir 58
                 p++q +l  + Gl+ +tvs++ ++L  +g+++  g rr+ 
  EHT98439.1 18 APISQSDLKVRSGLSMSTVSQATNRLLAQGIVQeLGlRRVS 58
                599******************************76655565 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05     0.068      12      54 ..       9      51 ..       6      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                CHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB 12 kvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVer 54
                ++   ++++ p + +++  ++g++ s+v ++ ++L+  G+V+ 
  EHT98439.1  9 RILRLIVEHAPISQSDLKVRSGLSMSTVSQATNRLLAQGIVQE 51
                5666789**********************************86 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0016       3.2      11      54 ..       6      49 ..       2      55 .. 0.92
   2 ?    1.6   0.3      0.15     3e+02      14      51 ..     247     281 ..     237     294 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
                HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
      HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLv 54
                v +rilr++ + ++ + s+l+ r +ls++t+s+  + L   g+v
  EHT98439.1  6 VTARILRLIVEHAPISQSDLKVRSGLSMSTVSQATNRLLAQGIV 49
                6689*****************************99999999987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.15
                 HHHHHH...STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHC CS
      HTH_20  14 rilraL...araegltaselaerldlskntlsyHLrvLeea 51 
                 +il+      ++++lt+ +l++r        s+ L++Leea
  EHT98439.1 247 AILQRVaqdEEGGPLTLQALDQR------PTSDVLAALEEA 281
                 55555544433444444444433......233333333333 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00013      0.26       7      41 ..       9      43 ..       8      44 .. 0.96
   2 ?   -4.3   0.0       8.6   1.7e+04       6      14 ..     246     254 ..     246     262 .. 0.68
   3 ?   -2.0   0.1       1.6   3.3e+03      10      28 ..     276     286 ..     273     289 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                   +IL+++ e a is ++L  r GlS stv +  +rL
     EHT98439.1  9 RILRLIVEHAPISQSDLKVRSGLSMSTVSQATNRL 43
                   9****************************999998 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 8.6
  HTH_AsnC-type   6 rkILeaLqe 14 
                    r+IL+   +
     EHT98439.1 246 RAILQRVAQ 254
                    566666555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
  HTH_AsnC-type  10 eaLqedaRisyaeLAervG 28 
                    +aL+e         ++++G
     EHT98439.1 276 AALEEA--------GRELG 286
                    455555........55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2789.83
//
Query:       EHT98440.1  [L=291]
Description: hypothetical protein CKS_4809 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-32  113.4   0.3    1.4e-32  113.3   0.3    1.0  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
      0.076   12.6   0.0       0.23   11.0   0.0    1.8  2  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 


Domain annotation for each model (and alignments):
>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.3   1.6e-36   1.4e-32       1     267 []       7     284 ..       7     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 1.6e-36
                  EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..E..EESTTCCCTCTTBSEEE-...HHHHHHH CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylv..gtgyGratlpekfekeiirs.eilvhgd 95 
                  +GiDgG+T ++a+l d +g +l++++ ++an+   +f+aa +++e+ + ++l++ag+ ++ +  t lv  ++g + a+++ ++++++ +   + v +d
   EHT98440.1   7 LGIDGGGTQCRARLTDSEGTLLAQAVGGPANVW-SQFDAALNSVEQLIAAVLSQAGLAPEALSHTSLVagLAGANVASVQARLAQWQPDCaALQVVSD 103
                  8********************************.679*************************99977522677778888888888888778999**** PP

                  HHHHH-TT--...EEEEEETTEEEEEEEETTEEEEEEEESS--TTSHHHHHHHHHHHT--TTTHHHHHTT--...................S------ CS
  BcrAD_BadFG  96 Gavalypgtr...tvldigGqdskgiqidkgkvenfqmndrcaageGrylgiiadelnmglreldglaekat...................kkarins 171
                    +a+++++    ++++i G++s g + d+ + +  +++++ ++++G+++++++++l+++l ++  + e++                    ++ ++++
   EHT98440.1 104 VEIACAGAHAaspGAVFITGTGSQGAAWDGERFTLLGGWGFALSDQGSGAELGRRALRLALLAHEAIVERTAlthslmarfdhspesmllwTRDAMPA 201
                  ********999********************************************************************************888**** PP

                  -SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 172 tcavfaeaelrdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  + a +++ ++ +a + +  a   l++++++i l v+ l   s+g    v l+GG+a        + +++ ++++       + ++y++  GA+++A
   EHT98440.1 202 DWARVVPEVFAAAHADDPHATVLLRQTAHDIGLMVNRLSAISQGQ---VALMGGLATP------ILPWLASDVQA----RLVAAQYDALDGALMMA 284
                  ***************************************999999...**********......88********9....79************998 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.6e-05      0.23       1      67 [.       5      64 ..       5      82 .. 0.76
   2 ?   -1.9   0.0      0.22     2e+03      41      88 ..      89     134 ..      74     139 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.6e-05
                EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-G CS
      FGGY_N  1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagise 67
                ++lg+D G+t+ +a + d +g+++a+a        + ++ + ++ ++ ++++ + i++vl+qag+ +
  EHT98440.1  5 YLLGIDGGGTQCRARLTDSEGTLLAQAV-------GGPANVWSQFDAALNSVEQLIAAVLSQAGLAP 64
                789********************98763.......33444444556667777777777777776655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.22
                 -EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETT CS
      FGGY_N  41 aeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkn 88 
                 a+++p+    ++ + ++ +++ a   +  + a+ i+g + +++++D +
  EHT98440.1  89 AQWQPDCAALQVVSDVEIACAGA--HAASPGAVFITGTGSQGAAWDGE 134
                 55666554444444444444444..57788888999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2303.65
//
Query:       EHT98441.1  [L=386]
Description: putative oxidoreductase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-17   64.5   0.0    9.3e-17   62.0   0.0    2.1  2  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    1.9e-05   24.6   0.0    9.3e-05   22.4   0.0    2.0  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0     1e-20   9.3e-17       1     114 [.       1     116 [.       1     123 [. 0.96
   2 ?   -0.1   0.0      0.18   1.6e+03       2      49 ..     276     328 ..     275     348 .. 0.69

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1e-20
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESS CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladpeidavivatpngtheelakaaleagkhvllEKP 94 
                   ++v+iiG+G+  s+ ++ ++++++   +v+ +dp ++   ++ +sfg++   a++++++ll++   d+++v++pn  h e++ +al+ag  v+ EKP
    EHT98441.1   1 MKVGIIGLGFRLSHVVKEFHKADPAFSLVGYCDPAPAGLPNL-HSFGIDpgkAFDSIDALLQHGGFDLLLVGSPNFMHLEHVTQALAAGYTVFTEKP 96 
                   69**************************************98.****************************************************** PP

                   S-SSHHHHHHHHHHHHHHTS CS
  GFO_IDH_MocA  95 lattveeakelvelaekkgk 114
                   ++ + e+  ++++l+++ g 
    EHT98441.1  97 VVINEEQTMAMARLVRQYGE 116
                   ***************99875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.18
                   EEEEETT.SHH....HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE CS
  GFO_IDH_MocA   2 rvaiiGa.Gki....gskhlrplnesqrleevvalldpdaeraeavaesfgve 49 
                   r+ +iG+ G++     ++++r  n+++ + ev  +++ +a   +  a+++++e
    EHT98441.1 276 RFCVIGTdGMAegdfVRNYFRVHNARTGEKEVETIYNGNAYDGHYGADALMAE 328
                   67789997777744455666555555555599999988887777666666665 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     1e-08   9.3e-05       7      70 ..     141     205 ..     138     320 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-08
                     TTTSSEEEEEEEEECBEEECHHHHCCGGSH.HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE. CS
  GFO_IDH_MocA_C   7 gklGevvsvdvwtldtragaeakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqppsvvaalgr 70 
                      +lGe++s++ + ++++++   + r +rr  k  g+   ++++HdiDl q L+ + p++va  g+
      EHT98441.1 141 RRLGEITSIEATEHIKPYHGAFFQRDWRRLeKYAGPYILEKCCHDIDLYQGLMQERPVRVASFGG 205
                     56*********88888888888888887778999***************************7764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2794.20
//
Query:       EHT98442.1  [L=163]
Description: hypothetical protein CKS_4811 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1177.94
//
Query:       EHT98443.1  [L=406]
Description: multi-drug resistance efflux protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-52  178.3  57.4    1.5e-30  106.3  33.3    2.0  2  MFS_1           Major Facilitator Superfamily
    7.1e-18   64.6  22.4      9e-12   44.5  12.8    2.9  3  MFS_1_like      MFS_1 like family
    8.1e-13   48.0  33.0    3.1e-06   26.3   5.9    3.9  3  Sugar_tr        Sugar (and other) transporter
    4.1e-05   22.2  27.4    8.5e-05   21.1   6.5    2.1  2  MFS_3           Transmembrane secretion effector
     0.0041   16.5   4.8     0.0041   16.5   4.8    3.2  1  MFS_4           Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        5.8    6.8   5.7         84    3.1   0.0    3.9  4  B12D            NADH-ubiquinone reductase complex 1 MLRQ subu


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3  33.3   5.1e-34   1.5e-30       2     255 ..      21     270 ..      20     271 .. 0.85
   2 !   83.0  25.9   6.4e-27   1.9e-23       2     167 ..     226     394 ..     225     403 .. 0.92

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 5.1e-34
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse.....igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlq 95 
                 +++ f +  a+++l+p+lp ++ ++lg+++ +      g+++++ ++ aa++++++G l+dr+Gr+ +l+ + l++a++++l  +++  w l++lr+l+
  EHT98443.1  21 VFGSFTTLVAMTLLLPFLP-LYVQQLGVNAPAaiarwSGIAYGATFFNAALTAPLWGKLADRYGRKLMLIRASLGMAIAMALTGMTTAAWQLVALRLLA 118
                 6899***************.888****9999977666666999999999******************999999999999555558777889******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 Gl  g++++++ +lia+ +pk + g a+g+l++g+ +G i+gpllgg+l  ++g ra+f++++++ ++af+   +ll ++pp rk + +  +       
  EHT98443.1 119 GLL-GGYASGSTILIAAQTPKAHTGWALGVLASGMMAGNIVGPLLGGVLPPLIGIRATFWLMGAIIFVAFLATTFLLKARPPVRKSDQELSQ----PVD 212
                 **9.8******************************************************************988888888888888888777....555 PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallal 255
                  l+p     +  +v++++l ++ll+f+ +s+   ++ ++  +l+e++ ++  l++g+++a++al
  EHT98443.1 213 DLSP----HKLVNVMLMWLSGMLLIFANMSIepiITLYIGQFLHEQHAIT--LMSGVVMAAAAL 270
                 5555....444555555677777776555557668888888899999999..888877777765 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 6.4e-27
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigl....lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlq 95 
                 +l+++l ++a + + p+++l++++ l+   ++i l    ++++ alg++++++ +Grl+dr+G+ rvl  gll+ al  l++  f++  w ll lr+l+
  EHT98443.1 226 WLSGMLLIFANMSIEPIITLYIGQFLH-EQHAITLmsgvVMAAAALGSILSAPYAGRLADRIGHWRVLSGGLLSCALL-LIPQaFITDAWQLLPLRFLM 322
                 899999999**********99999999.5556555455599999**********************************.99997768888********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvl 167
                 Gl+ g+l+p + a+i++ +p ++ gr++g+ +++  +G + gp++gg++  ++g r vf++  +v  ++++l
  EHT98443.1 323 GLALGGLMPCITAIIRHTVPATQVGRMLGYSTSAQYIGQVTGPVFGGFIGGAWGMRPVFLATSLVVGVCAWL 394
                 ********************************************************************9765 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   5.3e-09   1.6e-05      14      79 ..      30     100 ..      21     102 .. 0.85
   2 ?    3.3   6.9      0.01        31     292     383 ..      87     176 ..      85     179 .. 0.86
   3 !   44.5  12.8     3e-15     9e-12     157     383 ..     142     381 ..     141     383 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.3e-09
  MFS_1_like  14 algsllPYltiylkskglka.....seigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlf 79 
                 a+  llP+l +y ++ g++a     + +gi + +  + + l +p+wg laDr+g++  ++++sl +++++ 
  EHT98443.1  30 AMTLLLPFLPLYVQQLGVNApaaiaRWSGIAYGATFFNAALTAPLWGKLADRYGRKLMLIRASLGMAIAMA 100
                 56779*************963222245799******************************99998887765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.01
  MFS_1_like 292 lliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 +li a l +++   l ++++ aw ++ + +L g+  g   ++ +  ++  +pk + +   g+l++  + +G+ +G l+GG+l  l + + +F
  EHT98443.1  87 MLIRASLGMAIAMALTGMTTAAWQLVALRLLAGLLGGYASGSTIL-IAAQTPKAHTGWALGVLASG-MMAGNIVGPLLGGVLPPLIGIRATF 176
                 788899999999**********************99999666665.5569*************987.568**********987666666665 PP

  == domain 3  score: 44.5 bits;  conditional E-value: 3e-15
  MFS_1_like 157 GyaifafitGilidhysvnllp.............ysallyvlaallvisllvvlilnetekesklkvtksl.........qvllnilknpeviifllv 233
                 G+a+ + ++G++   +   ll+               + ++++ a+l +++l+ + ++  +  ++      l         ++l+n+     ++++  +
  EHT98443.1 142 GWALGVLASGMMAGNIVGPLLGgvlppligiratfWLMGAIIFVAFLATTFLLKARPPVRKSDQE------LsqpvddlspHKLVNV----MLMWLSGM 230
                 56666666666555555555555533555532222112333444444444444444444443333......1333443333444444....44444433 PP

  MFS_1_like 234 alil.gms.wgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgll 330
                 +li   ms   ii  ++  +L+e  a + + G+++a  ++++i    +a +l +++Gh+++l  +ll+ +l ++  a+i++aw +lp+ +L g+++g l
  EHT98443.1 231 LLIFaNMSiEPIITLYIGQFLHEQHAITLMSGVVMAAAALGSILSAPYAGRLADRIGHWRVLSGGLLSCALLLIPQAFITDAWQLLPLRFLMGLALGGL 329
                 3333133314678889*********************************************************************************** PP

  MFS_1_like 331 waaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                    ++  +++ +p    +++ g  +++ + +G+  G ++GG++ +  + + +F
  EHT98443.1 330 MPCITAIIRHTVPATQVGRMLGYSTSAQY-IGQVTGPVFGGFIGGAWGMRPVF 381
                 **********************8777755.89999999999887666666666 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9  14.8   2.8e-09   8.5e-06      45     161 ..      54     166 ..      19     198 .. 0.83
   2 !   26.3   5.9   1.1e-09   3.1e-06      44     158 ..     257     368 ..     222     371 .. 0.91
   3 !    9.1   1.4   0.00018      0.53      49      92 ..     351     394 ..     348     397 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.8e-09
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                 + +sg+  +++++ a++++ + g+l+dr+GRk  l+ a++ + i+ +l+++++   + ++l++ R+l+G+  G as  ++++i+  +pk++ g   ++ 
  EHT98443.1  54 ARWSGIAYGATFFNAALTAPLWGKLADRYGRKLMLIRASLGMAIAMALTGMTT---AAWQLVALRLLAGLLGGYAS-GSTILIAAQTPKAHTGWALGVL 148
                 56889999999******************************************...99***********9766665.68999999********999999 PP

                 HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 144 qlaitfGilvaaifglgl 161
                  +++ +G +v+  +g +l
  EHT98443.1 149 ASGMMAGNIVGPLLGGVL 166
                 999999999998877665 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.1e-09
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++ sg++++++ +G+i+++ +ag l+dr+G   +l  + + +    + qa+++     ++l+  R+l+G+++G+   +++  i    p++  g++ ++
  EHT98443.1 257 ITLMSGVVMAAAALGSILSAPYAGRLADRIGHWRVLSGGLLSCALLLIPQAFIT---DAWQLLPLRFLMGLALGGLMPCITAIIRHTVPATQVGRMLGY 352
                 57999***************************9999999999999999999999...89**************************************** PP

                 HHHHHHHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifg 158
                   +a  +G++ + +fg
  EHT98443.1 353 STSAQYIGQVTGPVFG 368
                 *********9998876 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00018
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavl 92 
                 g ++s+ ++G++ G +f+g++g  +G ++++l++++++ ++a l
  EHT98443.1 351 GYSTSAQYIGQVTGPVFGGFIGGAWGMRPVFLATSLVVGVCAWL 394
                 77899*******************************99998876 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4  12.6    0.0004       1.2     239     433 ..      36     239 ..      14     254 .. 0.60
   2 !   21.1   6.5   2.8e-08   8.5e-05      40     190 ..     254     397 ..     242     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0004
       MFS_3 239 aLLPlvardqldgd....alvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgG.aaWitalstlnvav 332
                   LPl +++         a   Gi  ga    A l+a l  +L +r + + ++  a++++A+ ++ +++++ +w++v   ll+G  +  ++ st+  a+
  EHT98443.1  36 PFLPLYVQQLGVNApaaiARWSGIAYGATFFNAALTAPLWGKLADRYGRKLMLIRASLGMAIAMALTGMTTAAWQLVALRLLAGlLGGYASGSTILIAA 134
                 556666655422220000233577777777777777777777888888888888888888888888888888887766555555223334445555555 PP

       MFS_3 333 qlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaa.illll....klpeleasdlapsnr.feeplvaldlkprrGpv 425
                 q  +P+   g al v    ++ g   G ll G++   ++++ +  + +a +++a + +++ll    ++++ +++ ++p ++  +++lv++ l   +G++
  EHT98443.1 135 Q--TPKAHTGWALGVLASGMMAGNIVGPLLGGVLPPLIGIRATFWLMGAIIFVAFLaTTFLLkarpPVRKSDQELSQPVDDlSPHKLVNVMLMWLSGML 231
                 5..577777888887777666666678888888888888877765555444443320222221111444444444455555345666777777777777 PP

       MFS_3 426 lvkieYki 433
                 l+  + +i
  EHT98443.1 232 LIFANMSI 239
                 77766666 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.8e-08
       MFS_3  40 isasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvp 138
                  +a  lm  +v aaa+L  +l +  aG laD + + +vl  + l     s  l ++ +  +++ w ll l +l+g+     +P   A++   v++ +v 
  EHT98443.1 254 QHAITLMSGVVMAAAALGSILSAPYAGRLADRIGHWRVLSGGLL-----SCALLLIPQAFITDAWQLLPLRFLMGLALGGLMPCITAIIRHTVPATQVG 347
                 5677889999*************************999988754.....4445555666689***************999******************* PP

       MFS_3 139 aAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwk 190
                      ++    i    GP  gG +  a G   +f +++l  ++ ++a l+w+
  EHT98443.1 348 RMLGYSTSAQYIGQVTGPVFGGFIGGAWGMRPVFLATSL--VVGVCAWLNWR 397
                 **********************************98876..45556666665 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   4.8   1.4e-06    0.0041      20     117 ..     251     348 ..     241     352 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-06
       MFS_4  20 laegqlslsqagllaaaNylGYLvGallaafalsagaeRlr....llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaar 114
                 l+e++      g + aa +lG ++ a  a     + a R++    l +gll+++lll+  a+++  + +l +Rfl G+a +  +  +++++ + + a++
  EHT98443.1 251 LHEQHAITLMSGVVMAAAALGSILSAPYA----GRLADRIGhwrvLSGGLLSCALLLIPQAFITDAWQLLPLRFLMGLALGGLMPCITAIIRHTVPATQ 345
                 44444444444555555566666655555....3444444444459******************************************99988877776 PP

       MFS_4 115 rer 117
                  +r
  EHT98443.1 346 VGR 348
                 555 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.7       1.8   5.4e+03      11      24 ..      96     109 ..      92     114 .. 0.55
   2 ?    0.9   0.0      0.14   4.1e+02       8      26 ..     178     196 ..     174     219 .. 0.77
   3 ?    2.5   0.1     0.042   1.3e+02       5      20 ..     315     330 ..     313     340 .. 0.85
   4 ?    3.1   0.0     0.028        84       7      26 ..     379     398 ..     376     401 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
        B12D  11 figagvggavfylv 24 
                 +i+++++g++  ++
  EHT98443.1  96 AIAMALTGMTTAAW 109
                 56666666555443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
        B12D   8 LfvfigagvggavfylvRl 26 
                 L+++i +++++a+ +l++ 
  EHT98443.1 178 LMGAIIFVAFLATTFLLKA 196
                 7899999999999999864 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.042
        B12D   5 liPLfvfigagvggav 20 
                 l PL + +g+++gg++
  EHT98443.1 315 LLPLRFLMGLALGGLM 330
                 89**********9965 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.028
        B12D   7 PLfvfigagvggavfylvRl 26 
                 P+f++++++vg +++  +R+
  EHT98443.1 379 PVFLATSLVVGVCAWLNWRQ 398
                 9**************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.20s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 3190.08
//
Query:       EHT98444.1  [L=298]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-33  115.1   5.7    3.7e-33  114.7   5.7    1.2  1  LysR_substrate  LysR substrate binding domain
    2.4e-18   65.8   1.4      4e-18   65.1   1.4    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.011   15.2   0.5      0.087   12.4   0.1    2.2  2  Sigma70_r4      Sigma-70, region 4
       0.05   13.7   0.1       0.13   12.4   0.1    1.7  1  HTH_28          Helix-turn-helix domain
      0.066   13.0   0.0       0.17   11.8   0.0    1.7  1  HTH_23          Homeodomain-like domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   5.7     1e-36   3.7e-33       2     207 ..      91     294 ..      90     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 1e-36
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     +++ g++r+ ap t++ ++++p+l+rf++ + ++ ++l+ +d  +  + ++eg +D+a++ +  ++++  +r+L + ++ l+a+p++ La++  +
      EHT98444.1  91 QHPVGHVRLQAPVTFGCQCIVPILSRFLRDHLHINVDLSLTD--NNDETMDEG-VDVAVIIRAHAPRQGNFRVLNDIHWGLYAAPAY-LAQHPAI 181
                     7899**************************************..8888889**.**********99999******************.****9** PP

                     .CGGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  97 .sledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                      +++ L +++l+++  +++     +++  ++  +++r ++++n+  all++++aG Gia+lp+++v+++la+g +v  +l+e+++   + yl+++
      EHT98444.1 182 sHPRLLPRHDLLMFHGPAHtAALPFRRDKQRLAVDVRSRFRANNSMALLNAALAGTGIAYLPSYMVQEALAQGTIV-QVLSEWQMDrLQSYLLVH 275
                     9*************655444899999999999********************************************.****************** PP

                     TTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflrea 207
                     +++ + +av  + d l ++
      EHT98444.1 276 QDSLAVSAVNLLCDVLISQ 294
                     ************9999776 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   1.4   1.1e-21     4e-18       4      60 .]      10      66 ..       7      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.1e-21
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                + +f  v+e +sft+AA+ Lg+s +++s+ i+ LE++lg +L++Rt+r+++LTe G+
  EHT98444.1 10 MMVFARVVELKSFTEAARVLGVSKSHISQEIAGLEQRLGIRLLQRTTRRMTLTELGQ 66
                679***************************************************997 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.4e-05     0.087      16      39 ..      15      38 ..       8      47 .. 0.86
   2 ?    0.7   0.1      0.11   3.9e+02      16      29 ..      54      67 ..      40      68 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
                HHTTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4 16 rfgeglTleEIgerlgiSrerVrq 39
                r +e  ++ E +++lg+S+++++q
  EHT98444.1 15 RVVELKSFTEAARVLGVSKSHISQ 38
                3388899****************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
                HHTTT--HHHHHHH CS
  Sigma70_r4 16 rfgeglTleEIger 29
                r  + +Tl E+g+ 
  EHT98444.1 54 RTTRRMTLTELGQA 67
                447899******96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.6e-05      0.13      13      44 ..      20      52 ..      12      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
      HTH_28 13 hsvreaArelgisrrtvyrWikryee.gGiagL 44
                +s +eaAr lg+s +++++ i  +e+  Gi  L
  EHT98444.1 20 KSFTEAARVLGVSKSHISQEIAGLEQrLGIRLL 52
                5889*********************98888544 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.6e-05      0.17      16      38 ..      18      40 ..       8      49 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwl 38
                e +s +e+Ar Lgvs++++++ +
  EHT98444.1 18 ELKSFTEAARVLGVSKSHISQEI 40
                48999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2286.07
//
Query:       EHT98445.1  [L=122]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-21   74.8   3.1    6.7e-21   74.3   3.1    1.2  1  HTH_18    Helix-turn-helix domain
    6.1e-19   67.6   0.3    4.4e-09   36.2   0.0    2.2  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   3.1   7.5e-25   6.7e-21       1      81 []      27     106 ..      27     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 7.5e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +a+++g+sr++Lqrlf++++g + +ey+r++Rl +    Ll n++  + ++A+ +GF+++++ +r f+++f +tP++ rr+
  EHT98445.1  27 VARRAGYSRWHLQRLFRQHTGFSLAEYIRQRRLTESALTLL-NSNEAILQVAMNYGFDTQQAYTRTFKNYFMMTPGQLRRQ 106
                 59*********************************999999.5************************************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   4.9e-13   4.4e-09       1      42 []      14      55 ..      14      55 .. 0.97
   2 !   29.8   0.1     5e-11   4.5e-07       6      42 .]      68     105 ..      66     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.9e-13
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                +++nl ++l+++++A  +g+Sr +++rlF++ tG +  +y++
  EHT98445.1 14 IESNLGHDLHLDEVARRAGYSRWHLQRLFRQHTGFSLAEYIR 55
                799*************************************96 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 5e-11
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  +n  i ++A+++gf  ++ ++r+Fk+++ mtP q r+
  EHT98445.1  68 NSNEAILQVAMNYGFdTQQAYTRTFKNYFMMTPGQLRR 105
                 68999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 882.37
//
Query:       EHT98446.1  [L=230]
Description: two-component system response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-24   85.8   0.0    3.2e-24   85.2   0.0    1.3  1  Response_reg  Response regulator receiver domain
    1.1e-18   67.1   0.1    2.3e-18   66.0   0.1    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.073   13.0   0.5       0.54   10.2   0.1    2.5  3  DNA_meth_N    DNA methylase N-terminal domain
       0.13   12.6   0.0       0.22   11.9   0.0    1.3  1  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   7.2e-28   3.2e-24       1     111 [.       3     112 ..       3     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 7.2e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+Dd+++ ++l+q+le +g  +v+ ++dg  a + + e  + ++llD+ +p+ dGl++l++ r + + +pv+ilta+++ +++v++l++gadd+
    EHT98446.1   3 VLLVEDDEMIGANLQQALEAAGW-SVDWVRDGVYAHNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLILTARDTVAQRVQGLDYGADDY 98 
                   89*********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kpfd +e+++++
    EHT98446.1  99 LLKPFDLQEVMARM 112
                   *********99876 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   5.2e-22   2.3e-18       2      75 ..     146     214 ..     145     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 5.2e-22
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGY 75 
                  ++ +lt++e++lL +Lle+pg ++sre+L ++++g  e+v++++vdv i+ +R+kL++     ++I++vrg G 
   EHT98446.1 146 QREQLTAREYALLYALLERPGAILSREQLENRIYGWGEEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 214
                  6679******************************************************.....79*******96 PP

>> DNA_meth_N  DNA methylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.87   3.9e+03      13      29 ..      10      27 ..       2      31 .. 0.57
   2 ?   -0.6   0.0      0.28   1.3e+03       6      27 ..      99     120 ..      97     124 .. 0.83
   3 ?   10.2   0.1   0.00012      0.54      31      57 .]     136     162 ..     127     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.87
  DNA_meth_N 13 KtvaeeLrkv.geseWsr 29
                  + + L+++   + Ws 
  EHT98446.1 10 EMIGANLQQAlEAAGWSV 27
                556666766513456775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
  DNA_meth_N   6 vLeIYDqKtvaeeLrkvgeseW 27 
                 +L+ +D  +v++  r+++ +++
  EHT98446.1  99 LLKPFDLQEVMARMRAITRRHH 120
                 566789999******9999886 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00012
  DNA_meth_N  31 tLnRwvkgksaarrLteaEvalLrkLL 57 
                  L+R v  k + ++Lt++E+alL +LL
  EHT98446.1 136 MLTREVLYKGQREQLTAREYALLYALL 162
                 68999999*****************98 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.8e-05      0.22       1      81 [.       2      84 ..       2      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.8e-05
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs..sleealealaekdphlPvlllgesdea 81
                ++L+++dd+    +l+  Le  g +v +v +  ++ +++++  ++++++          + l++   +    Pvl+l+ +d+ 
  EHT98446.1  2 RVLLVEDDEMIGANLQQALEAAGWSVDWVRDGVYAHNAWSEGGYSCVLLDLGLPrdDGLQVLRRARGRGDATPVLILTARDTV 84
                69*******************************************99998877766678888899999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1879.96
//
Query:       EHT98447.1  [L=449]
Description: sensory histidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-14   54.0   0.0    3.8e-14   53.1   0.0    1.4  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.3e-11   44.3   0.4    3.9e-11   42.8   0.4    1.9  1  HisKA          His Kinase A (phospho-acceptor) domain
    0.00097   19.5   0.1     0.0044   17.4   0.0    2.2  2  HAMP           HAMP domain
  ------ inclusion threshold ------
      0.026   15.2   2.0       0.22   12.2   1.8    2.3  2  KfrA_N         Plasmid replication region DNA-binding N-term
       0.03   14.3   0.0      0.066   13.2   0.0    1.5  1  HATPase_c_2    Histidine kinase-like ATPase domain
       0.04   13.8   0.0        0.1   12.5   0.0    1.6  1  HATPase_c_5    GHKL domain
      0.089   12.6   0.1       0.14   12.0   0.1    1.2  1  TatC           Sec-independent protein translocase protein (T
       0.16   12.1   0.7       0.28   11.3   0.7    1.4  1  XLF            XLF-Cernunnos, XRcc4-like factor, NHEJ compone
       0.56    9.2   4.3       0.17   10.9   1.0    1.6  2  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.9e-17   3.8e-14       5     101 ..     342     437 ..     339     449 .] 0.83

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.9e-17
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEE.EEETTTE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwv.esepgrG 101
                  Lr +++nl++Na+ ++++++ ++v +++  ++ v+ + DnG+G+p++ l++ f++f +  s +++ +g+GlGlsiv++++++++ ++ + + ++ +G
  EHT98447.1 342 ELRSLFDNLIGNAMLHTPEGSMVDVLLHRVAGQTVVDIVDNGPGVPESFLERAFDRFAR--SPDVKAQGSGLGLSIVRSVAQKHHIDVALaNCRDAQG 437
                 799*************8899999*****6559***************************..888999************9999987777753333333 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.4     2e-14   3.9e-11       1      65 [.     228     291 ..     228     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 2e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 s+++f+ + aHELrtP++a+ + +e L+ +   + e  ++++++es++ r +hlv +lL +sr e
  EHT98447.1 228 SQRQFMEDAAHELRTPVTAVTLQLENLRQH-IQPGEASRQFAQLESGVTRTRHLVTQLLNMSRWE 291
                 689************************997.346999999**********************987 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06    0.0044      11      53 .]     179     224 ..     170     224 .. 0.92
   2 ?   -3.5   0.0         7   1.4e+04      40      49 ..     391     400 ..     391     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHTTTBTSST...CCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP  11 rrLaraarriaaGdldtr...lpvsgrDEiGeLarafNaMldrLre 53 
                 r L+ a r+iaa d +++    p++ +DEi  L++a+N +ld+Lr+
  EHT98447.1 179 RDLRVASREIAAQDAHHPhsvSPERLPDEIQPLVEAYNSLLDKLRA 224
                 6799999****9999999997888********************85 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7
                 HHHHHHHHHH CS
        HAMP  40 LarafNaMld 49 
                 L raf+++++
  EHT98447.1 391 LERAFDRFAR 400
                 5689999886 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   0.00011      0.22      36     114 ..     177     257 ..     174     258 .. 0.85
   2 ?    0.1   0.0      0.64   1.3e+03      40      77 ..     287     321 ..     284     346 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      KfrA_N  36 isrvlkeweaelaaalaaraa....pelPealaeallaalwqaaleeaeeelaaaraelqaaraaleaeraeaearveeleae 114
                 i+r l+   +e aa++a  +     + lP++++ ++  + ++++l++ +++  ++r+ +++a+ +l++ +++++ ++e+l++ 
  EHT98447.1 177 ITRDLRVASREIAAQDAHHPHsvspERLPDEIQPLV--EAYNSLLDKLRAAWSSQRQFMEDAAHELRTPVTAVTLQLENLRQH 257
                 666777777777777776666667789999999999..9999999999******************************99986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.64
      KfrA_N  40 lkeweaelaaalaaraapelPealaeallaalwqaale 77 
                 + +we++ + a  +++  +l + l+e + ++l+  a +
  EHT98447.1 287 MSRWEDQSVVAHLENI--DLEDVLKESI-EQLMVVADK 321
                 5689999999999999..9999999999.999888766 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.3e-05     0.066      42     114 ..     349     425 ..     342     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
  HATPase_c_2  42 Navehayleap.egpvevrlesdeealtvevaDsGpgfdpe...tlpdpteeepkeslkegGrGlalikglvDevey 114
                  N +  a l+ p    v v l + +++ +v + D+Gpg + +    + d+ + +p+ +++ +G+Gl ++++++ + ++
   EHT98447.1 349 NLIGNAMLHTPeGSMVDVLLHRVAGQTVVDIVDNGPGVPESfleRAFDRFARSPDVKAQGSGLGLSIVRSVAQKHHI 425
                  6666777888867889999******************55442337788888899****************9998877 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-05       0.1       5      87 ..     342     429 ..     339     439 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
  HATPase_c_5   5 dlcvilgnlLdNAieacskieeekrfIrltvrekkks.liisieNsyeg......ek..kkle.sskskkeehGiGlksireivkkykgnlsi 87 
                  +l +++ nl+ NA+    +     +++++ +++  ++ ++ +++N   g      e   +++  s   k +  G+Gl+ +r++++k++ ++++
   EHT98447.1 342 ELRSLFDNLIGNAMLHTPE----GSMVDVLLHRVAGQtVVDIVDNG-PGvpesflERafDRFArSPDVKAQGSGLGLSIVRSVAQKHHIDVAL 429
                  6778899999998865544....56899888877766155555565.332333431134444436678899****************988875 PP

>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.9e-05      0.14       3      85 ..       5     175 ..       4     182 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHT.......HHHH......HHHCCHHHHC.C............................................. CS
        TatC   3 LeeLrkrlirallavaiafiitfvf.......aeel......iafllepleeae............................................. 43 
                 +++Lr++l+  ll + + +i ++++       +  +                 +                                             
  EHT98447.1   5 MRSLRNKLLSTLLLIHLLMIGGVAWyffncygE--MvgvikdE----------Qlakladawsvnreipplmpviapahkiksafviqlwdaqgrlrss 91 
                 578999999988888888888764312233220..12222220..........1233344445555556666666666666666666666666667777 PP

                 ...........................................TTS-EE--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCT CS
        TatC  44 ...........................................eevelivlspleafllklkvslvaglvlasPvilyqlwafva 85 
                                                              + +++ls ++ ++++  +s ++ l+l++P+ l+ +w  v+
  EHT98447.1  92 swpelhaplqpengykdvqigdcrdcewriytrsgqpgseiktI-QVMLNLSYMKEMMVRRALSAIIPLILMMPLSLLVIWLVVR 175
                 77777777666666666666666666666655555555444331.457799******************************9885 PP

>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   0.00014      0.28      62     147 ..     209     295 ..     182     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
         XLF  62 e...eqlavlleklrkaldgskkssaefslnlsskaeedsLtlkltieLpgplspleWefslv.kepsssltkeLvlpllqasaelkrqv 147
                 +   e +++ll+klr a +++ +  ++++++l++ +     tl+l  +L + ++p e + +   +e+  ++t++Lv +ll++s+  +++v
  EHT98447.1 209 QplvEAYNSLLDKLRAAWSSQRQFMEDAAHELRTPVT--AVTLQL-ENLRQHIQPGEASRQFAqLESGVTRTRHLVTQLLNMSRWEDQSV 295
                 044489************7777776666666666333..455555.45999999*9*9999997888888***********987666554 PP

>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.62   1.2e+03     221     244 ..      10      33 ..       3      58 .. 0.55
   2 ?   10.9   1.0   8.5e-05      0.17      70     106 ..     143     179 ..     137     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.62
                    xxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 221 glkislllsllllalillalfgqt 244
                    + ++s+ll++ ll ++++a+++++
     EHT98447.1  10 NKLLSTLLLIHLLMIGGVAWYFFN 33 
                    333333333333333333333332 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.5e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  70 glsklikrRilrlliplliwllliillialvaghiqa 106
                     ++++++rR+l  +ipl++++ l +l+i+lv+  i+ 
     EHT98447.1 143 YMKEMMVRRALSAIIPLILMMPLSLLVIWLVVRKITR 179
                    6899***************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3203.93
//
Query:       EHT98448.1  [L=288]
Description: nucleoside channel, receptor of phage T6 and colicin K [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-78  262.4  19.0      5e-78  262.2  19.0    1.0  1  Channel_Tsx  Nucleoside-specific channel-forming protein, Tsx


Domain annotation for each model (and alignments):
>> Channel_Tsx  Nucleoside-specific channel-forming protein, Tsx
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.2  19.0   2.8e-82     5e-78       2     245 .]      31     288 .]      30     288 .] 0.97

  Alignments for each domain:
  == domain 1  score: 262.2 bits;  conditional E-value: 2.8e-82
  Channel_Tsx   2 ndlkwtqfnlmksvd.elppgksddtYlElEfggrsgwvdlYGyvDvenlaesskssdk...nkgsklfmkikprlsldaltgkdlSfgpvkelYiat 95 
                  +d++++++n++ s++ +++p+ ++d YlE+E++++++w+d+YGyvD++n+++ ++++ +   ++gs+lfm+i+pr+s+d+ltg++l fgp+ke+Y+a+
   EHT98448.1  31 SDWWHQSVNVVGSYHtRFGPQFNNDVYLEYEAFAKKDWFDFYGYVDLPNFFGVGNNNANgifDHGSPLFMEIEPRFSIDKLTGTSLAFGPFKEWYFAN 128
                  79*************************************************97777777899************************************ PP

  Channel_Tsx  96 dfnlgdga.sgkgennlvvGlGtdvkvpwllklglnlyakyqieny..sneeewnGyqgsvnwfkpfyffangsflsyqgyidyeFgrdekdkaankr 190
                  ++++++g+ s++++n++++GlGtd+++++ + l+ln+yakyq+eny  +ne++w+Gy+++v++f+p+++ ++g+ l y g++++++g+d++dk +  r
   EHT98448.1 129 NYIYDMGRnSANRQNTWYMGLGTDIDTHSDIGLSLNVYAKYQWENYgaANEDSWDGYRFKVKYFVPITTLWGGN-LGYVGFTNFDWGSDLRDKTGPIR 225
                  ******997899***********************************9999*********************99.*****************99988* PP

  Channel_Tsx 191 tsnglasflgLywhsdrlalgyglkyyknvyqlkDg........glgqkttgighyfsvtYkF 245
                  tsn++as+++L +++++++++ +++y++n++q+ Dg          + k+tg+g+y++++Y+F
   EHT98448.1 226 TSNSIASSHILSLGYEHWHFSAVARYFHNGGQWGDGqelgfgssASEIKSTGWGYYLVAGYNF 288
                  *****************************************9999999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2124.52
//
Query:       EHT98449.1  [L=41]
Description: hypothetical protein CKS_4824 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       153  (0.00853366); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 317.81
//
Query:       EHT98450.1  [L=169]
Description: NmrA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-05   22.2   0.0    9.4e-05   22.1   0.0    1.1  1  NmrA      NmrA-like family


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.2e-09   9.4e-05     138     228 ..      15     100 ..       6     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.2e-09
                 EEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 138 fvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprklkgkriklagntlsgneivelfekkigkt 228
                 ++ +g+fm+++  +     v d++++  +v  lg  +  + l  + +DiG  +++i+ +   + ++++ +ag+tl++ e+++ ++ ++g++
  EHT98450.1  15 IISTGIFMSYLFEPDFG--VVDLQNN--TVHALGSIDNTMTLT-TPDDIGMLTAAIVFKTPRIRNEIVYIAGDTLTYAEVADKLQSALGRP 100
                 57899****99986555..5555555..688889888666666.9**************999***********************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1461.67
//
Query:       EHT98451.1  [L=286]
Description: L-arabinolactonase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-59  202.1   0.0    1.2e-59  201.8   0.0    1.1  1  SGL       SMP-30/Gluconolactonase/LRE-like region
     0.0067   16.7   0.1      0.024   14.9   0.1    2.0  1  DUF5122   Domain of unknown function (DUF5122) beta-propeller


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   1.4e-63   1.2e-59       1     245 [.      12     251 ..      12     252 .. 0.94

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 1.4e-63
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpesvGaiaprkd.grlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGr 98 
                 lgE+p+w+e++++L+w+Di g+++ +l++ t+    + +pe++G++a++++ + l++a++s+la++++++ge+ +lad++ +e p +r  Dg++d++G+
  EHT98451.1  12 LGECPLWCERTRRLYWTDIEGSELLALEEGTDIVMRWALPERLGSFALTEKdNVLLMALASRLAFCNIDTGEFIPLADSP-GE-PGTRTGDGRCDRAGN 108
                 79******************************************99996656999************************6.77.9************** PP

         SGL  99 lwfGtmgdeeakgeevgalyrldpd.gkle.rvlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeG 195
                 ++fGtm+d+  ++   g+  rl++   ++e + l +++ipN +++spdg t+Y++Ds++++i+ +d+    + l+ +rvf ++  ++ +pDG++vDa G
  EHT98451.1 109 FVFGTMDDGFPAKV-IGKFHRLNAVtLSIEtLPLPEVAIPNSICFSPDGGTMYYCDSMQNRIMCCDY----PSLDHQRVFTETGGDG-APDGSCVDAMG 201
                 ********998877.7*********96655055799*******************************....45899****9988885.8********** PP

         SGL 196 nvwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 +vw+A wgg++vvr+ pdG+ +     p  + t++a++G++ +tLy tsa
  EHT98451.1 202 YVWNAEWGGNRVVRYRPDGTTDCILPSPGIQSTCPALAGEAFTTLYCTSA 251
                 ****************************88*******************9 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.7e-06     0.024       8      33 ..     199     223 ..     191     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-06
     DUF5122   8 VaGsftsyngssdfalvRLnaDGslD 33 
                 + G+ + ++ ++ +++vR+ +DG+ D
  EHT98451.1 199 AMGYVW-NAEWGGNRVVRYRPDGTTD 223
                 678999.9999*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2602.48
//
Query:       EHT98452.1  [L=157]
Description: integral membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-31  109.0  17.7    2.5e-31  108.8  17.7    1.0  1  DMT_YdcZ  Putative inner membrane exporter, YdcZ


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8  17.7   1.4e-35   2.5e-31       2     138 ..       5     143 ..       4     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 1.4e-35
    DMT_YdcZ   2 llllallaGallalqaaiNaqLgkklg.splaAalvsflvGlivllllllllrks.aalaalksvpwwallGGllGavfvtlnillvpklGaaltvvlv 98 
                 ++++a++aG+ ++lq+++N+qL+k lg +p++Aal+sf+ G++ l ++ ll +   ++laa+ s+p w l GGl+Ga  +++ ++l+pk+G ++++ l+
  EHT98452.1   5 YYVIAFAAGLGITLQTTLNSQLAKGLGgDPVTAALFSFTAGAFGLGIYSLLRGGLfTSLAAIPSQPVWSLAGGLIGACALFSYVVLAPKIGFSALLGLA 103
                 7899*********************998*************************9899****************************************** PP

    DMT_YdcZ  99 llGqllaslliDhfGlfgvekrplsltrllGlllllaGvv 138
                 ++Gqll+s +iD+fGl+g+ +rp+sl +l G+l++l+G++
  EHT98452.1 104 IVGQLLSSQVIDNFGLLGAIRRPVSLLKLGGMLVMLIGLA 143
                 **************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1351.57
//
Query:       EHT98453.1  [L=465]
Description: amidohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-29  103.1   0.2    6.4e-23   81.6   0.0    2.5  3  Amidohydro_1  Amidohydrolase family
    2.7e-14   53.5   0.4    4.3e-08   33.1   0.0    2.4  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.32   2.9e+03     292     309 ..      22      39 ..      21      41 .. 0.88
   2 !   19.1   0.0   7.6e-08   0.00068       1      88 [.      69     171 ..      69     210 .. 0.79
   3 !   81.6   0.0   7.2e-27   6.4e-23     164     344 .]     225     418 ..     220     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.32
                   HHHHHTT-TTTSSSS-TT CS
  Amidohydro_1 292 ngAkalglddkvGsievG 309
                    gA +l++d++vG  e G
    EHT98453.1  22 RGATILSMDENVGNHERG 39 
                   6999*********99988 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 7.6e-08
                   EEEE-EEEEEEECETTECSSS.....GHHHHH..............STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH..HHHHHHHHHHTSSSE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga.....tledwl..............vppetaaealesgiktalksGtttvadmgattst..giealleaaeelplg 76 
                   i +PG++D+H H+  + lr +          l                p +++++    +  a+ +G+tt++d + +  t  + +a  ea+ ++  g
    EHT98453.1  69 IAMPGMVDSHRHAWEGQLRRInpnatC----LddysnathfsfakyYRPADIYVGNLLTALGAIDAGITTMIDNSHNSRTaaHSDAAVEALLDA--G 159
                   679*************99999966642....344468889**********************************99877789888888888887..9 PP

                   EEEEEESSEGGS CS
  Amidohydro_1  77 lrilggkvsldr 88 
                   +r++ +++ +  
    EHT98453.1 160 IRAIHASGAPVA 171
                   998877766654 PP

  == domain 3  score: 81.6 bits;  conditional E-value: 7.2e-27
                   HHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHH..SEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHH CS
  Amidohydro_1 164 aafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsi..lrsgrealrkaldeGvkvglgtDgaasgnslnll 258
                   + fg  +e ++ le +++ gll++   i+ h++ l ++ +e+l+e+  +++v+ cp+s+s   ++sg++a++ a + G+  gl++D+  s  s +++
    EHT98453.1 225 EFFG--AEMASELESLHQQGLLGP-DNIFNHCTALPDEGWEILREA--GVRVNVCPRSDSHygIESGMFAIEAAQRHGITPGLSVDNETS-YSTDMF 315
                   5566..688899************.*********************..9999999***99999***********************5555.899*** PP

                   HHHHHHHHHHHHCCTT........TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.CT........CGGGTTTCTSEEEEEEE CS
  Amidohydro_1 259 eelrlalklqrgllye........deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl.di........laafvglkkdgnvkkvi 338
                    e+r+a+ lqr+  +          + + ++++++l+ aT +gA + gl dkvGs+++Gk+ADl++++  d+          ++v  ++  n+++v+
    EHT98453.1 316 MEMRVAFYLQRVMGMHkqhccdsdHSLTTIPAAQLLKSATVDGAFCAGLQDKVGSLTPGKQADLILINAaDLnlypngnaFGTVVHAAERSNIDTVM 412
                   **********99888888999443333446789**********************************99933446688888899999999******* PP

                   ETTEEE CS
  Amidohydro_1 339 vkGklv 344
                   ++G++v
    EHT98453.1 413 IGGRIV 418
                   ***998 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.6e-07    0.0015       2      32 ..      62      90 ..      61     105 .. 0.81
   2 !   33.1   0.0   4.8e-12   4.3e-08     271     472 ..     214     418 ..     181     419 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.6e-07
  Amidohydro_3  2 viDakGrlvlPGFvDsHtHlagggvnlrllr 32
                  viDa++++ +PG+vDsH H  +g+  lr+++
    EHT98453.1 62 VIDATNMIAMPGMVDSHRHAWEGQ--LRRIN 90
                  9******************76666..45444 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 4.8e-12
  Amidohydro_3 271 aadergldvaihaigdaavddvldafeaaaekngnqdrrrlehaegvtesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkellnag 367
                   +a+  gl++    +g++ ++    ++e+ +++  +       h+++++++  e +++ +v+  v+p+++ +         +   +g +++ +  ++g
    EHT98453.1 214 EARRLGLPIVTEFFGAEMAS----ELESLHQQGLLGPDNIFNHCTALPDEGWEILREAGVRVNVCPRSDSH---------YGIESGMFAIEAAQRHG 297
                   55555555555555555555....4444433333333336789**********************999883.........6777888********** PP

  Amidohydro_3 368 vkvalgsD.apvgpfdpwprigaavmrktrrgg...evlrpdeels...leealalyTrgpAkalgledrkGtLevGadADlvvld..........a 447
                   ++  l+ D     ++d + +++ a+ ++ + g+   ++++ d+ l+     ++l+  T ++A   gl+d+ G+L +G++ADl++++          +
    EHT98453.1 298 ITPGLSVDnETSYSTDMFMEMRVAFYLQRVMGMhkqHCCDSDHSLTtipAAQLLKSATVDGAFCAGLQDKVGSLTPGKQADLILINaadlnlypngN 394
                   ********888889999999999999999877799*999999987522268889999************99***************55555554432 PP

  Amidohydro_3 448 dpldvdppelaear.........vrltvvdGrvv 472
                   +            +         +  ++++Gr+v
    EHT98453.1 395 AFG----------TvvhaaersnIDTVMIGGRIV 418
                   222..........123333334488888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3505.03
//
Query:       EHT98454.1  [L=295]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-42  145.1   0.1    2.5e-42  144.6   0.1    1.2  1  LysR_substrate  LysR substrate binding domain
    4.5e-18   64.9   0.4    8.7e-18   64.0   0.4    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.65   10.1   0.0    2.1  2  HemN_C          HemN C-terminal domain
       0.18   11.7   0.4       0.48   10.3   0.0    1.9  2  DUF1652         Protein of unknown function (DUF1652)


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.1   5.5e-46   2.5e-42       2     206 ..      88     292 ..      87     295 .] 0.92

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 5.5e-46
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     +++rgrLr+ +p  +a+ +++p l++f  ryP++ l   ++d  +++dl++eg +D++ir+g++  s l+arpL+e +++ +aspd+ + + g p
      EHT98454.1  88 RRPRGRLRVDMPGGIAHFIVMPNLKEFYSRYPDIYLMTGVSD--RQVDLVQEG-VDCVIRTGELLNSTLVARPLGEFRWITCASPDY-IREyGIP 178
                     579******************************998888888..*********.*********************************.9999*** PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCT...TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalrea...glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                      s+edL +++ i++  g + r   +++ + +    +++ +   vn++   + +++ G G+a l + +v+++l+ g lv  +l+++++p  ++ l+
      EHT98454.1 179 QSPEDLSHHRAIHYFSGQSRRTDELRFVKGTetlSVSVSGQAAVNETGLYIKMCLEGFGLAQLAENVVAEHLEKGTLV-EVLADWQPPsVPVTLL 272
                     **************777774444444444444448888****************************************.******9999****** PP

                     EETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflre 206
                     y+++r lspavraf+d++ e
      EHT98454.1 273 YPHQRFLSPAVRAFADWIGE 292
                     *****************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.4   1.9e-21   8.7e-18       2      59 ..       5      62 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.9e-21
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +++++f+ vae+gsf rAAe L l  ++v+  ik+LE+ l+v+L++Rt+r+++LT++G
  EHT98454.1  5 QAMQVFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEG 62
                789******************************************************9 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00015      0.65      39      65 ..      37      63 ..      26      64 .. 0.91
   2 ?   -0.9   0.0      0.39   1.8e+03      16      28 ..     231     243 ..     231     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
      HemN_C 39 aaaleklqeqGLLeldggrlrltprGr 65
                +++lek+ + +LL+ + +r++ltp+G+
  EHT98454.1 37 IKNLEKYLQVRLLNRTTRRVSLTPEGL 63
                789***********************7 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
      HemN_C  16 RlreGldlaafeq 28 
                 ++ eG+ la +++
  EHT98454.1 231 MCLEGFGLAQLAE 243
                 8999**9999988 PP

>> DUF1652  Protein of unknown function (DUF1652)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011      0.48      25      66 ..      43      82 ..      29      83 .. 0.89
   2 ?   -3.2   0.0       1.7   7.5e+03      35      47 ..     129     141 ..     127     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
     DUF1652 25 smtvrlfdpasgevdLlvtGiplrelnssrdisrLieelrae 66
                 + vrl+ +++ +v+L+ +G+  + l+ +r+i +L+e  +a 
  EHT98454.1 43 YLQVRLLNRTTRRVSLTPEGL--QYLAQCREILALVEHTEAS 82
                588*****************8..579**********987775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
     DUF1652  35 sgevdLlvtGipl 47 
                 + +vdL+ +G+++
  EHT98454.1 129 DRQVDLVQEGVDC 141
                 5678999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2179.34
//
Query:       EHT98455.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-98  329.2   3.2    1.6e-97  326.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.029   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.036   12.6   6.9      0.056   12.0   6.9    1.3  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.48   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.1  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  326.4   0.0  1.9e-100   1.6e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHT98455.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 326.4 bits;  conditional E-value: 1.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98455.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98455.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98455.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98455.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98455.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98455.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98455.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98455.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98455.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98455.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98455.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98455.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98455.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98455.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98455.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98455.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98455.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98455.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98455.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98455.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98455.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98455.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98455.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98455.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98455.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98455.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98455.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98455.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98455.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98455.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1443  (0.0804841); expected 358.6 (0.02)
Passed bias filter:                     1023  (0.0570584); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 3650.80
//
Query:       EHT98456.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98456.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 826.40
//
Query:       EHT98457.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98457.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98457.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98457.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98457.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 803.19
//
Query:       EHT98458.1  [L=298]
Description: putative LysR-type transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-18   64.9   0.2    7.8e-18   64.2   0.2    1.4  1  HTH_1            Bacterial regulatory helix-turn-helix protei
    1.3e-14   54.1   0.0    2.1e-14   53.4   0.0    1.4  1  LysR_substrate   LysR substrate binding domain
     0.0082   16.0   0.1      0.024   14.5   0.1    1.8  1  MarR_2           MarR family
  ------ inclusion threshold ------
      0.062   12.9   0.0       0.14   11.8   0.0    1.6  1  HTH_24           Winged helix-turn-helix DNA-binding
       0.15   12.2   0.0       0.27   11.4   0.0    1.3  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.2   2.2e-21   7.8e-18       1      60 []       5      64 ..       5      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.2e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++l+ fva ae+ +f++AA +L +s++ v+r i++LE++lg+pLf R++r+++LT  Ge
  EHT98458.1  5 LDALKFFVAAAETMNFREAAVRLAISPSVVTRTIAELENQLGEPLFKRNTRSIVLTSFGE 64
                678******************************************************997 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   5.9e-18   2.1e-14       5     204 ..      91     289 ..      87     293 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 5.9e-18
                     CEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSEC CS
  LysR_substrate   5 rgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepvs 97 
                     +g +ri+     + +++l +ll   +  yPe+ ++ + +     ld ++++ +D++ir ++++ +++++rp+   ++ l+ sp+  +++ g+p +
      EHT98458.1  91 KGVVRITLFRFPGhEQVLYELL-TSLDPYPELFIDWRLDM--MKLDTVQNR-IDMGIRIEREPNPNFIVRPITLVHHALMTSPGL-IEKlGAPKN 180
                     6788888888888445555555.44588999999999999..999*99999.********************************7.777****** PP

                     GGGGCT.SEEEEESTTSTHHHHHHHHHHCTTEEC..EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  98 ledLad.eplilleegsglrdlledalreaglkp..rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                     ++dL++ +p+  l  +  +   +e  l+     +  +  + +++ ++ +++++aG  +   +++a+r++l+dgrlv  +lpe+ l+ ++lyl+++
      EHT98458.1 181 FDDLRQrYPFSGLL-NPETGKVFEYMLDGVDTFVprHLEFFTTDSQSEIQAALAGKAVIQSSNLACREYLEDGRLV-NVLPELKLEtWQLYLYRP 273
                     ******99999976.6667777777777774444136667778888889***************************.****************** PP

                     TTCCCHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidfl 204
                      +   + ++r++  +l
      EHT98458.1 274 YQPLVPQRIRTVFHIL 289
                     **********998877 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   6.6e-06     0.024      12      47 ..      10      43 ..       4      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.6e-06
                HHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 12 aaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                +++++++   ++ +e a rl +s+s v+r++++L+ 
  EHT98458.1 10 FFVAAAET--MNFREAAVRLAISPSVVTRTIAELEN 43
                45677777..999*********************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.14      17      43 ..      17      43 ..       6      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
      HTH_24 17 risqreLAerlglSpstvnrrlkrLee 43
                 ++ re A rl +Sps v+r + +Le+
  EHT98458.1 17 TMNFREAAVRLAISPSVVTRTIAELEN 43
                58899********************97 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.4e-05      0.27       2      53 ..      15      66 ..      14      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.4e-05
  HU-CCDC81_euk_2  2 vvplnytelaaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLs 53
                     ++ +n+ e a ++++s+ vV +++ e+ ++lg+ l ++ + ++++  +G L+
       EHT98458.1 15 AETMNFREAAVRLAISPSVVTRTIAELENQLGEPLFKRNTRSIVLTSFGELF 66
                     6889*********************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2302.30
//
Query:       EHT98459.1  [L=301]
Description: aldo-keto reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-69  234.1   0.0    2.3e-69  233.8   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.046   14.0   0.0       0.12   12.6   0.0    1.6  2  ESCRT-II      ESCRT-II complex subunit


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.8   0.0   2.5e-73   2.3e-69      19     292 ..      15     290 ..       5     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 233.8 bits;  conditional E-value: 2.5e-73
                   HHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.......--SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE- CS
  Aldo_ket_red  19 ealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.......dlrdaeiksglskeniresleeslkrLgtdyvDllllH 108
                   e  +l+++a+e G+n+fDtA++Y   ++eellG al+k    r++viiatK         +++  +  + +++++re+le sl+rL+td++Dl++ H
    EHT98459.1  15 ERTKLIDKAVELGCNLFDTAPIY-GFENEELLGVALSK---HRDNVIIATKFgvtgmenIDGQLVPVLDSRPASVREQLEGSLSRLQTDHIDLFYQH 107
                   566889*****************.679***********...***********999986655555666778888************************ PP

                   S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS-- CS
  Aldo_ket_red 109 rpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgkyqsee 205
                   r+dp+++  e v++ ++el+ eGki+++G+Sn +v  +++a  ++ ++++av+ +y+++ +  e+ l+++c +++++++aysplg+G+l+g+++ ++
    EHT98459.1 108 RVDPKVE-PEVVAGLMKELIAEGKIKYWGLSNAPVSYIRRA--HAICPVTAVEDQYSMMWRKPEQDLFKVCDELDIGFMAYSPLGNGFLSGQVTADT 201
                   *******.*******************************99..****************999*********************************** PP

                   -SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 206 dkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                    +++++ r  ++r+  e ++ n+ +++ + ++a+ ++ + aq++l++ l+q++ +++ipg++++++le+n+ a +++ls+ e++ ++++
    EHT98459.1 202 TYGEGDYRGMMGRFkpEVMENNQALLDLIAQIAERNNATSAQIVLAWELAQKPYIVPIPGTTKLHRLEENFHAANVQLSDAELNDINQA 290
                   **************************************************************************************986 PP

>> ESCRT-II  ESCRT-II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.12      46     101 ..      95     169 ..      75     170 .. 0.84
   2 ?   -2.4   0.0      0.58   5.2e+03      25      65 ..     242     280 ..     230     295 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
    ESCRT-II  46 eeeeeeselFknkkinRrlsledirevleelvkkgraewv...................dkekskalvywrtpee 101
                 + ++ + +lF+ ++++ ++++e +  +++el+++g++++                    +  ++++ ++wr+pe+
  EHT98459.1  95 RLQTDHIDLFYQHRVDPKVEPEVVAGLMKELIAEGKIKYWglsnapvsyirrahaicpvTAVEDQYSMMWRKPEQ 169
                 4566789********************************988888888888888888776666888899999986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.58
    ESCRT-II  25 sslilaycrhhrifklslseaeeeeeeselFknkkinRrls 65 
                 ++++la+  +++ + + + ++++ ++ +e F+  +++  ls
  EHT98459.1 242 AQIVLAWELAQKPYIVPIPGTTKLHRLEENFHAANVQ--LS 280
                 5666666666666666666665555556666655543..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2257.07
//
Query:       EHT98460.1  [L=141]
Description: NAD(P)H oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-35  121.0   0.0    5.6e-35  120.9   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
     0.0036   17.0   0.0     0.0044   16.8   0.0    1.2  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   6.2e-39   5.6e-35      59     196 ..       9     138 ..       1     140 [. 0.91

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 6.2e-39
                   HHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHH CS
  Flavodoxin_2  59 ayeekpadveseqiekllaadaivlqfPlwwfgvPailKgwiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdell 155
                    y+++++dv++eq ++l+  d+ivlqfP+ w+++P++lK+w+D vlt+g+++    g  g++++L++k+++++v+ Gg e++yq++g  g+++ e+l
    EHT98460.1   9 LYPDGKIDVAAEQ-AALEKTDRIVLQFPMQWYSTPPLLKQWLDDVLTYGWSH----G--GETQALRDKQLMLAVSLGGAESAYQPDGAAGHTVGEYL 98 
                   588988*******.************************************99....5..578*********************************** PP

                   HHHHHHHHHTT-EEEEEEEEESCTCCCHHHHHHHHHHHHHH CS
  Flavodoxin_2 156 pplrgilgfiGikdvepvlvegvagaedeealaealerlee 196
                     +++i g++G+++++p++  g a ++ +e++a+ +e+++ 
    EHT98460.1  99 LSFETISGYLGMNYIKPFITGGSATIT-DEEIAAQVEQYKT 138
                   **********************55555.6669999999986 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.9e-07    0.0044      62     122 ..      16      81 ..       5     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.9e-07
                 HHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-......SSCHCCTT-EEEEEEE-SSTT CS
     FMN_red  62 dvaellekiaaadaliivtPeYngsysgllKnalDrlsr.....trgkkelrgKpvalvavgggrr 122
                 dva+  +++++ d +++  P  ++s ++llK  lD +         + ++lr+K ++l++  gg+ 
  EHT98460.1  16 DVAAEQAALEKTDRIVLQFPMQWYSTPPLLKQWLDDVLTygwshGGETQALRDKQLMLAVSLGGAE 81 
                 6677789999************************86644599877788999999998885555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1082.66
//
Query:       EHT98461.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-44  151.2   0.0    3.1e-44  149.9   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   3.4e-48   3.1e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.4e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHT98461.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHT98461.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHT98461.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHT98461.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHT98461.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHT98461.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2274.21
//
Query:       EHT98462.1  [L=319]
Description: putative phage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-19   70.3   0.2    2.3e-19   69.8   0.2    1.3  1  Phage_integrase  Phage integrase family
    6.7e-08   32.8   0.1    1.5e-07   31.7   0.1    1.6  1  Phage_int_SAM_5  Phage integrase SAM-like domain
    7.2e-07   29.4   0.0    3.4e-06   27.3   0.0    2.2  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    0.00011   22.6   0.1    0.00047   20.6   0.0    2.0  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.2   5.2e-23   2.3e-19      26     169 ..     153     304 ..     111     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 5.2e-23
                      HHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTT.TSBSSBET........TSSB--HHH CS
  Phage_integrase  26 llellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaek.sellfask........rgkplsrqt 110
                      +l  l +tG+R + ll +r+ d+++ ++ i + ++  K+ +e+ vp+++++ + l++l++++le+  k ++ lf             + + +  
       EHT98462.1 153 VLDALRRTGMRQNQLLHIRLCDVNFMHNWISLRPEGAKNHREHLVPITRHLRPRLEMLYNRSLERGAKmEDQLFNLSrfdgrrneTSENMDNPP 246
                      478899********************************************************55554414455533347776887777888889 PP

                      HHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHH.CTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase 111 vrkafkraveeagiekpltpHtlRhsfataLlea.gvdlrvvqkllGHssisttqiYthv 169
                      +r++f+r+ +e g    ++pH++Rh++at+L+   + +l+  q+llGHs  + t +Y+++
       EHT98462.1 247 LRAFFRRLSNECGFV--VSPHRFRHTIATNLMSMpERNLKMAQDLLGHSTPAVTLQYVES 304
                      99*************..*************9876489********************986 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   3.3e-11   1.5e-07      18      96 ..      21      99 ..       6     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.3e-11
                     -HHHHHHHHHHHHHTTTS-..S---TTT--HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHTTS--S-HHH.H CS
  Phage_int_SAM_5 18 skgtlrnykstlkhlkkFlkkkditfeeidkefleeFedYLkkkkglsentiskyfkklkavlnkAikegilkknpyp.k 96
                     + +t  +y+++lk + +F  +  i+  ++d +++ + + +  + +gl+++t ++ +++++a++n Ai+eg+++   +p +
       EHT98462.1 21 RVATEWSYRKVLKTFLNFA-GAAISPADVDDRLVLNWRRHVINVEGLTKTTWNNKLTHMRALFNFAIEEGYISATRNPfN 99
                     5667778899999999999.899******************99*****************************98877654 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.6e-10   3.4e-06      14      84 .]      20      89 ..       9      89 .. 0.89
   2 ?   -2.9   0.0         2     9e+03       2      12 ..     248     258 ..     244     260 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 7.6e-10
                     S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS-----.-----HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1 14 lspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeg.lsatslarrlsalrsFfqflvreg 84
                     l  +T  +Yr+ L+ fl+f+      s + ++ + v+++ ++  +   l+ t+++++l ++r++f f+++eg
       EHT98462.1 20 LRVATEWSYRKVLKTFLNFAGA--AISPADVDDRLVLNWRRHVINVEgLTKTTWNNKLTHMRALFNFAIEEG 89
                     56678889**************..899999999999999999987556*********************997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
                      HHHHHHHHHTT CS
  Phage_int_SAM_1   2 eqfleyLiker 12 
                      ++f+++L++e+
       EHT98462.1 248 RAFFRRLSNEC 258
                      45666666665 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07   0.00047      11      83 ..      17      90 ..       7      92 .. 0.91
   2 ?   -1.8   0.0         1   4.5e+03      37      64 ..     238     267 ..     225     274 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1e-07
  Phage_int_SAM_4 11 laglserTiksYlsaikrflrflkkk.apeeltkedieaYlnyLanerklsastqknalnalsffykkvlerel 83
                     +++l+  T+ sY   +k fl+f     +p++++++ +     + +n + l+++t +n+l  ++++++ ++e+ +
       EHT98462.1 17 SKTLRVATEWSYRKVLKTFLNFAGAAiSPADVDDRLVLNWRRHVINVEGLTKTTWNNKLTHMRALFNFAIEEGY 90
                     4788999****************9336*****************************************999876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
  Phage_int_SAM_4  37 apeeltkedieaYlnyLanerk..lsastq 64 
                      + e +++  ++a++  L ne    +s+ + 
       EHT98462.1 238 TSENMDNPPLRAFFRRLSNECGfvVSPHRF 267
                      556677777788888888766555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2484.37
//
Query:       EHT98463.1  [L=192]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.5   0.7       0.17   12.0   0.7    1.4  1  Josephin  Josephin


Domain annotation for each model (and alignments):
>> Josephin  Josephin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7   9.6e-06      0.17       8      51 ..       8      49 ..       2      95 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.6e-06
    Josephin  8 lHalNnLlQgeaftaseLaeiAteldereralmtesesnsadet 51
                 HalN L Q+ + ++s+L+ +A+e+ ++e++l +      +d++
  EHT98463.1  8 DHALNVLEQNGLASTSSLKILAEEMRLSEQQLEQFW--ADRDAL 49
                6****************************8886652..233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1811.00
//
Query:       EHT98464.1  [L=566]
Description: protein-disulfide reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-33  114.2   0.0    5.5e-33  113.6   0.0    1.3  1  DsbC           Disulphide bond corrector protein DsbC
    3.7e-20   72.7  17.9      6e-20   72.1  17.9    1.3  1  DsbD           Cytochrome C biogenesis protein transmembrane 
    8.7e-09   35.4   0.1    1.6e-08   34.6   0.1    1.5  1  Thioredoxin_7  Thioredoxin-like
    2.3e-08   34.5   0.0    4.4e-08   33.5   0.0    1.5  1  Thioredoxin_2  Thioredoxin-like domain
      5e-07   29.7   0.0    7.9e-07   29.0   0.0    1.3  1  Thioredoxin    Thioredoxin
    6.2e-07   29.6  24.9    6.2e-07   29.6  24.9    2.1  2  DsbD_2         Cytochrome C biogenesis protein transmembrane 
  ------ inclusion threshold ------
      0.071   12.7   0.0       0.11   12.1   0.0    1.2  1  PRP8_domainIV  PRP8 domain IV core


Domain annotation for each model (and alignments):
>> DsbC  Disulphide bond corrector protein DsbC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   2.2e-36   5.5e-33       2     118 ..      32     142 ..      31     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 2.2e-36
                 CCCCECCCCEEEEEEECCCEEEEEEEE-TTEEEECCCECEEEESCCCC.CEEEEE---EEEECCCTEEEEEEECSEEEEEEEEECEC.SSEEEEEEEEE CS
        DsbC   2 aellkpeeafkfsaagdtntlalrweiapgyylYwdkpsgeltlsagvalgelqlPapeekedeffglevevYegevtlplplkaaadpaelklkvtyq 100
                  ++l++++af+f++++++ +l+l+w++++gyylY++++  ++ + ++  ++++ lPa++ +edeffg ++e+Y +++++p++l++aa     +l+vtyq
  EHT98464.1  32 SRFLPVDQAFAFDFDQQGAQLNLHWKVKDGYYLYRQQI--RVVANNAR-IAPVALPAGQPHEDEFFG-KSEIYPQNLNVPVTLQQAA--RGSTLSVTYQ 124
                 68************************************..88888887.******************.*******************..999******* PP

                 EEETTTEEEEEEEEEEEE CS
        DsbC 101 gCaeaglCyppetklvll 118
                 gCa ag+Cyppet+++ l
  EHT98464.1 125 GCAAAGFCYPPETRSIPL 142
                 *************99866 PP

>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1  17.9   2.3e-23     6e-20       2     211 ..     172     377 ..     171     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.3e-23
        DsbD   2 flaGllsflsPCilpliPaylsyisgvsvedvktekkkv.kvllkallFvlGlslvfvslglsaaflgqllkdvke..virrvaglivillGlhflgvf 97 
                 +l G+   ++PC+lp++P+  ++i     +  +++   + + +  al++v G++l++++lg+++a++g  ++   +  ++ +  +++ ++l +++ g+f
  EHT98464.1 172 LLIGIGVAFTPCVLPMYPLISGIIL----GGKRNN--SLgRLFALALVYVQGMALTYTLLGVTVAAAGLRFQAALQhpYVLIGLSVLFVVLAMSMFGLF 264
                 78899999**********8666555....444443..2225699***********************9999865551144455567778899999**** PP

        DsbD  98 k..ievleklklllkikkkaelsvlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvglllellkkklkslkkysk 194
                 +  +++ ++++l+l  ++++  s  g +l+G + +l+ sPC++  l+++l++ a++++l+ g++ l +y++G+++p++ v+l+ ++++    +   +++
  EHT98464.1 265 SlqLPASVQTRLTLWSNRQQGGSLPGVFLMGALAGLICSPCTTAPLSAILLYIAQSGNLLAGTGTLWLYAIGMGLPLIAVTLFGSRFL---PKSGPWMQ 360
                 95556667777777777888888899***********************************************************877...55567888 PP

        DsbD 195 aveiaggvllvllGvll 211
                 +v+   g +++ l v+l
  EHT98464.1 361 TVKEGFGFVILALPVFL 377
                 88888888888877765 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   6.3e-12   1.6e-08       7      83 .]     461     538 ..     455     538 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 6.3e-12
                    HHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS...--S-GGG.-TT-...--SSEEEEE-T CS
  Thioredoxin_7   7 dealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdv...terdanilelde...qgvPvvafldp 83 
                    d+al+  +++g+  +v++ a+wc+ C+ +e+ + sd  v+a   +++ ll+++v   t +d  +  l++    g+P+++f+d+
     EHT98464.1 461 DQALQ--HTQGRMTMVDLYADWCVACKEFEKYTFSDSAVRA-SLKDVQLLQANVtanTATDNAL--LQHlhvLGLPTILFFDA 538
                    55554..5789999*************************99.99**********6654444433..33443466*******96 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.7e-11   4.4e-08       4     109 .]     468     561 ..     465     561 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.7e-11
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk...eivarl 96 
                    +g+ ++v+ ++++C  Ck ++k ++++++v+       lk+      v++ +a+  +     +++ ++l++ + v g+Pti+f+d++    +  r+
     EHT98464.1 468 QGRMTMVDLYADWCVACKEFEKYTFSDSAVRAS-----LKD------VQLLQANVTAN----TATDNALLQHLHVLGLPTILFFDAQgkeIPGSRI 548
                    78999**********************999888.....544......33333333331....234489********************877789** PP

  Thioredoxin_2  97 pGyvpaeeleall 109
                    +G+++++++++ l
     EHT98464.1 549 TGFLKPKDFDEHL 561
                    *********9875 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.1e-10   7.9e-07       7      83 ..     457     540 ..     452     563 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.1e-10
                  HHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHH..HHHHHHHHCTTTSEEEEEETTTSHH....HHHHTT-SSSSEEEEEETTE CS
  Thioredoxin   7 kenFeeevak.ekklvlveFyApwCghCkalaP..eleklaeelkdkvklakvdvdened....lakkyevegiPtlklfkngk 83 
                   ++ ++++++ + +  +v+ yA+wC  Ck+++   + +++ ++  ++v+l++ +v++n+     l ++++v g+Pt+++f +  
   EHT98464.1 457 VSQLDQALQHtQGRMTMVDLYADWCVACKEFEKytFSDSAVRASLKDVQLLQANVTANTAtdnaLLQHLHVLGLPTILFFDAQG 540
                  55677888885567789**************8621334455555559***9999999865111156889*********998654 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6  24.9   2.4e-10   6.2e-07       2     189 ..     171     363 ..     170     374 .. 0.74
   2 ?   -1.5   0.1       0.8   2.1e+03      49      83 ..     394     427 ..     387     469 .. 0.56

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.4e-10
      DsbD_2   2 afllgLlgsl.hClgmCggivlalslskpk.....rala.lllynlGRilsYallGalvgllgsvlqlageleglrallgvllgllllllglklllkkk 93 
                 a+l+g+  ++ +C++   ++++ + l  ++     r +a  l+y  G  l+Y+llG+ v+++g  +q+a + +++ + l+vl+++l++  ++ l+    
  EHT98464.1 171 ALLIGIGVAFtPCVLPMYPLISGIILGGKRnnslgRLFAlALVYVQGMALTYTLLGVTVAAAGLRFQAALQHPYVLIGLSVLFVVLAMS-MFGLFS--- 265
                 67888887888999988999999877775411222445359*************************99998776666666666666554.333432... PP

      DsbD_2  94 llklerlgkllsrllkklakkl..kslasalllGllnGll..pC..glvysalllalasgsaleGalvmlaFgLGTlpalllfglllgllskklrkkll 186
                      +l++ ++++l+  +++    sl++ +l+G+l Gl+  pC  +++ ++ll+++ sg++l G  ++ ++++G  ++l++++l+ +++  k    ++
  EHT98464.1 266 ----LQLPASVQTRLTLWSNRQqgGSLPGVFLMGALAGLIcsPCttAPLSAILLYIAQSGNLLAGTGTLWLYAIGMGLPLIAVTLFGSRFLPKSGPWMQ 360
                 ....23444444444444444333789************8779*55569************************************99999888876666 PP

      DsbD_2 187 rla 189
                 ++ 
  EHT98464.1 361 TVK 363
                 544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.8
      DsbD_2  49 lGalvg..llgsvlqlageleglrallgvllglllll 83 
                 lG+++   +++++l+++g      +++++l+++++l+
  EHT98464.1 394 LGVAFFtwAFSASLSASGG---KWRIVQMLMLIAALI 427
                 4443331033333332222...223444444444443 PP

>> PRP8_domainIV  PRP8 domain IV core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.11     122     174 ..     439     490 ..     423     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
  PRP8_domainIV 122 nivikgselkLPfkavlkiekladlvlkatepkmvlfnlyddWlesissytaf 174
                    n + +++  +LPf++v  +++l +  l+ t+ +m++  ly dW  +++ +  +
     EHT98464.1 439 NDAPQQTVAHLPFQSVQTVSQLDQ-ALQHTQGRMTMVDLYADWCVACKEFEKY 490
                    5556677789***********965.6677899***********9888776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4331.60
//
Query:       EHT98465.1  [L=104]
Description: copper binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-32  111.1   0.0      2e-32  111.0   0.0    1.0  1  CutA1     CutA1 divalent ion tolerance protein
  ------ inclusion threshold ------
       0.06   12.9   0.1      0.068   12.7   0.1    1.1  1  ERAP1_C   ERAP1-like C-terminal domain
       0.11   12.2   0.0       0.15   11.8   0.0    1.2  1  DUF508    Domain of unknown function (DUF508)


Domain annotation for each model (and alignments):
>> CutA1  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   3.3e-36     2e-32       1      98 [.       4     101 ..       4     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 3.3e-36
                 EEEEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS-EEEEEEESEEEHHHHHHHHH CS
       CutA1   1 vlvlvtapseeeakklaralveeklaACvnilpkieSvYrWkgkieedkEvllliktreekveelekrvkelhpyevpeiialpieagseaYlkWiee 98 
                 v++l+tap+++ a++la++ ++++laACv++lp+ +S+Y+W+g++e+++Ev++l+k+ +++ ++l + +k+ hpy+vpe+++lp+++g+++Yl+W+++
  EHT98465.1   4 VVILCTAPDQACAQQLATQALKARLAACVTLLPGATSYYVWQGQLEQASEVQMLLKCDTAHQQALLDLLKRSHPYDVPELLVLPVQHGDSEYLSWLHA 101
                 589********************************************************************************************986 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.1e-05     0.068      47     108 ..      12      73 ..       1      77 [. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
                 HHHHTTSS-HHHHHHGGG.G...GGG--SHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHH CS
     ERAP1_C  47 alaragelsaadlldlllgy...lanEtdylvwsqalsqlatlksllsadplyaalkaflrklle 108
                 + a a +l +++l + l+++   l++ t+y vw+  l+q++ ++ ll+ d    a ++ l++ll+
  EHT98465.1  12 DQACAQQLATQALKARLAACvtlLPGATSYYVWQGQLEQASEVQMLLKCDT---AHQQALLDLLK 73 
                 555566666666555554332335999********************6344...56666666665 PP

>> DUF508  Domain of unknown function (DUF508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.15      91     129 ..      12      50 ..       3      69 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
      DUF508  91 qqlcarqlkdaklnPrlsyCiGelnyknskPvlsedlkk 129
                  q ca+ql  + l+ rl+ C+  l +  s  v +  l++
  EHT98465.1  12 DQACAQQLATQALKARLAACVTLLPGATSYYVWQGQLEQ 50 
                 689*********************999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 837.25
//
Query:       EHT98466.1  [L=433]
Description: C4-dicarboxylate antiporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.6e-146  485.9  26.3     8e-146  485.7  26.3    1.1  1  DcuA_DcuB  Anaerobic c4-dicarboxylate membrane transporter


Domain annotation for each model (and alignments):
>> DcuA_DcuB  Anaerobic c4-dicarboxylate membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.7  26.3  4.4e-150    8e-146       1     368 []       5     365 ..       5     365 .. 0.97

  Alignments for each domain:
  == domain 1  score: 485.7 bits;  conditional E-value: 4.4e-150
   DcuA_DcuB   1 ellvvllaillGarlggiglglagglGllvlvlvfglkpgspPidviliilaViaaaaalqaaGGldylvklAeklLrknPkkitflaPlvtylltlla 99 
                 el++v+lai+l arlggig+g+agg+G+l+l+l+fg+kpg++P+dvi ii+aViaa+aa+q+aGG+dylv+lAe+lLr++P+++tflaPlvty++tlla
  EHT98466.1   5 ELFIVVLAIWLDARLGGIGIGFAGGMGVLILTLGFGMKPGAIPFDVIEIIMAVIAAIAAMQVAGGMDYLVSLAERLLRRHPRYVTFLAPLVTYVMTLLA 103
                 699************************************************************************************************ PP

   DcuA_DcuB 100 GTghvaysllPviaevakengirPerplsiavvasqiaitaSPisaavvalvalleelgvsllqilavtipatligvlvaalvslrlgkelkddpeyqe 198
                 GTgh+a+s+lPviaevake+g+rP+rpls+a+vasq+aitaSPisaavv++++lle+ gvs++ +la++ipat++g+++aalv+++lgkelkdd +yq+
  EHT98466.1 104 GTGHTAFSTLPVIAEVAKEQGVRPSRPLSMAIVASQVAITASPISAAVVFFATLLEPRGVSYIMLLAIAIPATMVGLFLAALVTNFLGKELKDDAVYQA 202
                 *************************************************************************************************** PP

   DcuA_DcuB 199 rlkegevkkevkkeeektelkkklkkkaklsvliFllavvlvvllgafpelrplvgkkkklsmteviqivmlaaaalilllckvkakkilkssvfkagm 297
                 rl++g+v   +++e+  ++ +      a+ svl+Fl+++++vv+++++++   ++  +++l+++e+i ++ml++a+li l+c++++  il++s+fk+gm
  EHT98466.1 203 RLAKGDVA--LRGET-VYHARP----GARKSVLLFLIGIAAVVIYATITSESVNLIVNPPLPRNEAIVVFMLTIATLISLTCNIDSGAILSASTFKSGM 294
                 *******8..66666.455554....8**********************64444449****************************************** PP

   DcuA_DcuB 298 vavvavlGvaWlgdtfvsanleelkealselvkeapwllavvlflvsallySqaatvkalvPlglalgisp 368
                 +a+v+v+GvaWlgdtfv+a+l+ ++  +++++k++pw+la+vlf+ s+llySqaat+kal+P++lalg++p
  EHT98466.1 295 SACVCVMGVAWLGDTFVKAHLADIQMLAGDTLKTYPWMLALVLFFSSMLLYSQAATAKALLPAALALGVTP 365
                 *********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3233.81
//
Query:       EHT98467.1  [L=478]
Description: aspartate ammonia-lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-106  356.7   0.0   1.4e-106  356.4   0.0    1.1  1  Lyase_1      Lyase
    1.3e-17   63.9   0.0    3.9e-17   62.4   0.0    1.9  1  FumaraseC_C  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.4   0.0  1.6e-110  1.4e-106       3     312 .]      15     345 ..      13     345 .. 0.99

  Alignments for each domain:
  == domain 1  score: 356.4 bits;  conditional E-value: 1.6e-110
                 EEEETCHHHHHHHHHHHHHGGGHHHHHC.......HHHHHHHHHHHTTSST....HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHH CS
     Lyase_1   3 ftvkadklmgiftersrenfrlseedik.......alaalkkaaakanvdl....keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnev 90 
                  +v+ad+++g++t r++enf++s+ +i+       +++++kkaaa+ n++l      +a+ ii+a+devl++g+++dqf+++v+q g+gt+vnmn+nev
  EHT98467.1  15 REVPADAYYGVHTLRAIENFYISNSKISdipefvrGMVMVKKAAAMTNKELqtlpRDIANTIIQACDEVLNNGRCMDQFPVDVYQGGAGTSVNMNTNEV 113
                 689**********************999***********************99999******************************************* PP

                 HH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHH CS
     Lyase_1  91 ig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaeal 179
                 ++    el+g      ++++pnd+v+++qS+nD++pT++r+a++++l  kLl+ + qL+d++++ka ef+ ++k+GrT+lqdA+P+tlgqe+ ay++ l
  EHT98467.1 114 LAniglELMGhqkgeyQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL-LKLLDGISQLADGFQRKADEFQTILKMGRTQLQDAVPMTLGQEFHAYSVLL 211
                 ***99*9999*************************************.55************************************************* PP

                 HHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSS CS
     Lyase_1 180 erdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.agl 276
                 +++ + + ++  +ll+e++ g+ta+gt ln+   +++l +++la+v+ l  v+a++ +ea+sd+ a+v++++ lk+la++Lsk+++Dlrllssg+ agl
  EHT98467.1 212 NEETKSILRTG-ELLLEVNLGATAIGTRLNTPDGYQQLAVQKLAEVSNLAvVPAEDLIEATSDCGAYVMVHSSLKRLAVKLSKICNDLRLLSSGPrAGL 309
                 ***********.*************************************************************************************** PP

                 EEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 277 velslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                 +e++l+e ++GSSiMP KvNPv  E++++v+++v+G
  EHT98467.1 310 NEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIG 345
                 **********************************98 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   4.4e-21   3.9e-17       1      53 [.     411     463 ..     411     464 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 4.4e-21
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMt 53 
                  +VT+Lnp+IG++++  + k + ++gk++re+vle+gllte eld+++++++++
   EHT98467.1 411 IVTYLNPYIGHHNGDIVGKICAETGKSVREVVLERGLLTESELDDIFSVQNLM 463
                  8*************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3391.23
//
Query:       EHT98468.1  [L=153]
Description: inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-32  111.4   6.9      3e-32  111.0   6.9    1.1  1  FxsA      FxsA cytoplasmic membrane protein
  ------ inclusion threshold ------
       0.13   11.3   0.1       0.17   10.9   0.1    1.1  1  MMM1      Maintenance of mitochondrial morphology protein 1


Domain annotation for each model (and alignments):
>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   6.9   3.3e-36     3e-32       2     103 ..       8     109 ..       7     115 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 3.3e-36
        FxsA   2 lllllpvlEilllvlvasaiGvlatllllvltallGallvrrqgrralrrlqeklaqgelpaeelldglllllggvLLllPGfvtdvlGlllllPptRk 100
                 ++++l  +Ei l+++va+++Gvl t+ll+v+t+++G++lv++qg++ ++ +qekla++e pa+e+++++ l+++g+LLllPGf+td+lGlllllPp++k
  EHT98468.1   8 IFFVLAWIEISLFIQVAHVLGVLLTMLLVVFTSCIGVSLVKNQGMKNFMLMQEKLARNESPAQEMIKSVSLIIAGFLLLLPGFFTDMLGLLLLLPPVQK 106
                 788999********************************************************************************************9 PP

        FxsA 101 llr 103
                  l+
  EHT98468.1 107 HLT 109
                 876 PP

>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.8e-05      0.17     208     254 ..      23      69 ..      15      85 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.8e-05
                 SEE---EEEEEEEEEEEEEEEEEE...E--SSS-...-S-------- CS
        MMM1 208 ltavLPvalavsvvrfsgtLtvslipstkaeelvkeeeeeeeeeeee 254
                 +  vL v l++ +v f++++ vsl++++  ++++  +e+ +++e+  
  EHT98468.1  23 VAHVLGVLLTMLLVVFTSCIGVSLVKNQGMKNFMLMQEKLARNESPA 69 
                 56799*********************999988884444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1072.31
//
Query:       EHT98469.1  [L=97]
Description: Cpn10 chaperonin GroES, small subunit of GroESL [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-30  103.0   1.7    7.4e-30  102.9   1.7    1.0  1  Cpn10     Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   1.7   4.1e-34   7.4e-30       1      93 []       2      95 ..       2      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 4.1e-34
                S-EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG.---.EEEEEGGG--EE- CS
       Cpn10  1 kikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkv.dgkeylilkekdIlavi 93
                ki+pl+drV+vkr+e e k++ggi+l+ sa+ k++ G+V aVG+g++ e+ge  pl+vkvgd V+f+++ g k ++ d++e li++e+dIla++
  EHT98469.1  2 KIRPLHDRVIVKRKEVEAKSAGGIVLTGSAAGKSTRGEVLAVGKGRILESGEVKPLDVKVGDVVIFSEGYGAKTEKiDNEEVLIISESDILAIV 95
                79********************************************************************9998887***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 779.23
//
Query:       EHT98470.1  [L=549]
Description: Cpn60 chaperonin GroEL, large subunit of GroESL [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-95  319.4  19.4      6e-95  318.7  19.4    1.3  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.061   13.1   0.3       0.16   11.8   0.3    1.7  1  REF         Rubber elongation factor protein (REF)


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7  19.4   6.7e-99     6e-95       1     489 [.      23     523 ..      23     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: 318.7 bits;  conditional E-value: 6.7e-99
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 lad+vk+tlGPkG++++l +++g++++T+DG+++++e+e+e+      a+++ e+a++ ++ +GDGTtt+++La+++++e+ k++aag++p ++++g++
  EHT98470.1  23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFenmgAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGID 121
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECEC..TTSEEESEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsl..edselveGlvldkgvls 192
                 +a+ +a+e+Lk+   +++++  d++++++v ++s++s+      e ++ l+++A+          ++g+ +v+++e+g    ++  +veG+++d+g+ls
  EHT98470.1 122 QAVVAAVEELKKL--SVPCS--DSKAIAQVGTISANSD------ETVGTLIAQAM---------EKVGKEGVITVEEGTGlqDELDVVEGMQFDRGYLS 201
                 *************..77765..679*************......9**********.........79***********99877889999*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 p       +   +le + +ll d++++  ++                        ++++le+++k+g+++++++++++ +al++l+ n ++++ +v   
  EHT98470.1 202 PyfinkpeTGAVELESPFILLADKKISNIRE------------------------MLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVaav 276
                 *9997665556778*****************........................******************************************** PP

                 ........-HHHHHHHHHHHT--EBSCG.....GGGGCGC-EEEEEEEECCETTCCEEEEE.....................CE..............S CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssl.....edltpeelGtakkveeekigsekttiie.....................ev..............k 332
                         +k++l+++a++tG+t++s+      e+   e+lG+ak+v    i++++ttii+                      +              +
  EHT98470.1 277 kapgfgdrRKAMLQDIAILTGGTVISEEigmelEKAALEDLGQAKRV---VINKDTTTIIDgvgeestiqgrvtqirqqieeATsdydkeklqervakL 372
                 ***************************9896666666678*******...***********77777666666666666555500555555556666669 PP

                 SSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHH CS
  Cpn60_TCP1 333 sgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlakl 431
                  g++a++++++at+++++e++ ++edAl+++++a+e e+vv+GGG++++++a++l ++ + ++++++++i++  +A+e++++++ +NaG +p  v +++
  EHT98470.1 373 AGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVE-EGVVAGGGVALVRVAAQL-SELRGQNEDQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNV 469
                 ************************************.******************.888889************************************* PP

                 HHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 432 raahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 +a    g+ ++g++++++e+ ++++ g++Dp+kv+r+al+ A+++a +++++++++ +
  EHT98470.1 470 KA----GDGNYGYNAQTEEYGNMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTD 523
                 *9....5557********************************************9976 PP

>> REF  Rubber elongation factor protein (REF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   1.8e-05      0.16      80     154 ..      64     135 ..      19     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
         REF  80 tkldkrvpsvvKevssqalavaqkapeaarevasevqraGvveaaepvakelytkyepvaeelavsawrklnrlp 154
                 +k+++  +++vKev+s+a+++a   +++a  +a+ + ++G++++a   a       +  + +  v+a ++l++l 
  EHT98470.1  64 DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVA---AGMNPMDLKRGIDQAVVAAVEELKKLS 135
                 68899999***********************************99...566666777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4469.60
//
Query:       EHT98471.1  [L=116]
Description: lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-31  107.5   0.1    3.7e-31  107.3   0.1    1.0  1  DUF4156   Domain of unknown function (DUF4156)


Domain annotation for each model (and alignments):
>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.1   2.1e-35   3.7e-31       2      91 .]      24     114 ..      23     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 2.1e-35
     DUF4156   2 eltaegeaVkivdskpaseCqllGevtgsqgnwlsgiftsnkelvrgaandLrneAaalGgntivlvtstatetes.....sqtdvtmlgqvYkC 91 
                 el+++g++V+++d++p+++CqllG++tgsq+nwlsg    +++ +rgaandLrn+Aa++Ggn+i+++ts+   t++     +++d++m+gqvYkC
  EHT98471.1  24 ELSSAGQRVTFTDQQPGKQCQLLGTLTGSQSNWLSGA-GGETSALRGAANDLRNRAAEMGGNVIYGATSP---TQNllsafAPLDSKMTGQVYKC 114
                 799**********************************.9*******************************...656665544************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 885.51
//
Query:       EHT98472.1  [L=342]
Description: lysine 2,3-aminomutase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-09   36.4   0.0    4.2e-08   33.7   0.0    2.0  1  Radical_SAM  Radical SAM superfamily
    7.1e-07   29.6   0.0    1.5e-06   28.6   0.0    1.4  1  Fer4_12      4Fe-4S single cluster domain
    5.6e-06   26.5   0.0    9.6e-06   25.7   0.0    1.5  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0     7e-12   4.2e-08       5     158 ..     118     263 ..     115     269 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 7e-12
                  SEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC...CCTEEEEEEECSSCHG...HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx...xxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla...vpgiritvetngtlpd...eekle 95 
                   gC+ +C++C r++     +      +++  + ++++ a++   +e+i++gg+pl+ +d + +++ +a  a    + +ri+   + + p        +
   EHT98472.1 118 GGCAVNCRYCFRRH---FPYQDNQGNKRNWQAALDYI-ADHPeLDEIIFSGGDPLMAKDHELAWLIEALAAiphLKRLRIHSRLPVVIPAritQALCQ 211
                  59***********9...68888888888888888888.45555*********************9999998867555555555555555222233333 PP

                  HHHHTT-SEEEEEEBSSSHHHHHHHHT...CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  96 rllelgvdrvslgleaaddekvlklmn...rghtfeevlealeklreagikrvvdrivglpGende 158
                  +l+e         l+ +         +    ++  +++ +a+ +l++ag+    +  v+l+G+nd+
   EHT98472.1 212 TLAE-------TRLQVLKVT------HinhANEIDDALCDAMTRLKRAGVT-LLNQSVLLRGVNDR 263
                  3333.......333333222......2101222236667777777777777.77777777777775 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.4e-10   1.5e-06       7      78 ..     111     181 ..     105     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.4e-10
     Fer4_12   7 rlslf.vsgCnlsCkgCfnketw.sfksgkeft.kelleeiiedlkkesiegltllGGEPllpenaeallelvke 78 
                 r++l+  +gC ++C++Cf +    + ++g++ + +++l+ i    ++++ ++++++GG+Pl+ +++ +l+ l++ 
  EHT98472.1 111 RALLLvKGGCAVNCRYCFRRHFPyQDNQGNKRNwQAALDYIA---DHPELDEIIFSGGDPLM-AKDHELAWLIEA 181
                 555552579*********776541223334434355555553...35899************.788888877775 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.6e-09   9.6e-06       5      78 ..     117     186 ..     113     230 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.6e-09
     Fer4_14   5 lsgCnlsCkgCdnke.twkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeey 78 
                  +gC ++C+ C++++  ++++ g++ +    ++ l d  +++ + +++ ++GG+PL+  +++el  l++ l    
  EHT98472.1 117 KGGCAVNCRYCFRRHfPYQDNQGNKRN---WQAAL-DYIADHPELDEIIFSGGDPLMA-KDHELAWLIEALAAIP 186
                 58**********887123333333332...23333.233344445889********65.99****9999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2786.53
//
Query:       EHT98473.1  [L=188]
Description: Elongation factor EF-P [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-25   87.6   0.3    8.1e-25   86.3   0.3    1.8  1  Elong-fact-P_C  Elongation factor P, C-terminal
    3.5e-24   84.6   0.0    8.1e-24   83.4   0.0    1.7  1  EFP_N           Elongation factor P (EF-P) KOW-like domain
      2e-21   75.7   2.3    3.9e-21   74.8   2.3    1.5  1  EFP             Elongation factor P (EF-P) OB domain


Domain annotation for each model (and alignments):
>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.3   1.4e-28   8.1e-25       1      56 []     131     186 ..     125     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 1.4e-28
                     EEEEEEE--SSS--SSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE CS
  Elong-fact-P_C   1 VeleVvetepgvkGdtasggtKpatletGaevqVPlFIneGdkIkvdTrtgeYvsR 56 
                     +e eV+et+pg+kGdta +g Kpatl+tGa+++VPlF+++G+ +kvdTr geYvsR
      EHT98473.1 131 IEAEVIETDPGLKGDTAGTGGKPATLSTGAVIKVPLFVQIGEVVKVDTRSGEYVSR 186
                     688**************99************************************9 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   1.4e-27   8.1e-24       3      57 ..       7      61 ..       5      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.4e-27
                GG--TT-EEEETTEEEEEEEEEEEEETTS--EEEEEEEETTTS-EEEEEEETT-E CS
       EFP_N  3 selkkGlvieidgklyvVlefehvkpGkGqafvrvklknlrtGakvektfkagdk 57
                +++++Gl+i+++g++y + + e+vkpGkGqaf rvk++ l+tG+ vektfk++d+
  EHT98473.1  7 NDFRTGLKIMFEGEPYAIESSEFVKPGKGQAFARVKMRRLLTGSRVEKTFKSTDS 61
                9***************************************************996 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   2.3   6.6e-25   3.9e-21       2      54 .]      71     123 ..      70     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 6.6e-25
                 EEEEEEEETTEEEEEETTT--EEEEEHHHHTTGCGG--TT-EEEEEEETTEEE CS
         EFP   2 emqylYkdgdeyvFMdnetYeqielpkeqlgdaakfLkEgmevtvllyegepi 54 
                 + qy+Y+dgd+y+FM++e++eq+++++++l + +k+L+++ e+ v+l++++pi
  EHT98473.1  71 TLQYSYNDGDFYYFMHPESFEQYQVEAKVLDEVQKWLQDNAECIVTLWNDKPI 123
                 57****************************7777******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1449.00
//
Query:       EHT98474.1  [L=43]
Description: entericidin A membrane lipoprotein, antidote entericidin B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-08   34.7   0.0    1.6e-08   34.3   0.0    1.2  1  Entericidin  Entericidin EcnA/B family


Domain annotation for each model (and alignments):
>> Entericidin  Entericidin EcnA/B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   8.7e-13   1.6e-08       1      20 []      23      42 ..      23      42 .. 0.99

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 8.7e-13
  Entericidin  1 TveGaGqDvqaaGeAierAA 20
                 T++G+G+Dv++ G Ai+rAA
   EHT98474.1 23 TFHGFGEDVSHLGGAISRAA 42
                 9******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 338.16
//
Query:       EHT98475.1  [L=44]
Description: entericidin B membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-09   35.1   2.5    1.1e-08   34.8   2.5    1.1  1  Entericidin  Entericidin EcnA/B family
     0.0039   17.6   3.9       0.08   13.5   0.3    2.1  2  LPAM_1       Prokaryotic membrane lipoprotein lipid attachmen
     0.0067   16.6   0.4     0.0067   16.6   0.4    1.6  2  MLTD_N       MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> Entericidin  Entericidin EcnA/B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   2.5   1.8e-12   1.1e-08       1      20 []      24      43 ..      24      43 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.8e-12
  Entericidin  1 TveGaGqDvqaaGeAierAA 20
                 T++G+G+Dv+a+G+Ai+r+A
   EHT98475.1 24 TTRGVGEDVEAGGQAIQRSA 43
                 99****************99 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   1.3e-05      0.08       2      16 ..       3      17 ..       3      17 .. 0.97
   2 !    6.8   0.4    0.0017        10      12      18 .]      17      23 ..      17      23 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
      LPAM_1  2 KKillalgalllLsG 16
                KK+++a++ +++Ls+
  EHT98475.1  3 KKSIVAIFSVVMLSA 17
                9*************8 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0017
      LPAM_1 12 llLsGCs 18
                +lLsGC+
  EHT98475.1 17 ALLSGCN 23
                79****8 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   1.1e-06    0.0067      20      32 ..      10      22 ..       4      23 .. 0.95
   2 ?   -3.0   0.0       1.4   8.7e+03      13      21 ..      34      42 ..      32      43 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
      MLTD_N 20 isalaaaalLaGC 32
                +s+++++alL+GC
  EHT98475.1 10 FSVVMLSALLSGC 22
                9************ PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
      MLTD_N 13 ALtRavqis 21
                A+  a+q s
  EHT98475.1 34 AGGQAIQRS 42
                555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 369.71
//
Query:       EHT98476.1  [L=174]
Description: outer membrane lipoprotein (lipocalin) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-44  149.6   0.1    6.4e-44  149.4   0.1    1.0  1  Lipocalin_2  Lipocalin-like domain
    1.3e-10   41.6   0.0    1.6e-10   41.3   0.0    1.2  1  Lipocalin    Lipocalin / cytosolic fatty-acid binding protein
  ------ inclusion threshold ------
      0.055   13.0   0.0       0.17   11.4   0.0    1.7  1  VDE          VDE lipocalin domain


Domain annotation for each model (and alignments):
>> Lipocalin_2  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.1   1.1e-47   6.4e-44       2     146 .]      34     173 ..      33     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 1.1e-47
  Lipocalin_2   2 dlerYlGkWyeiArlpmrfergcvdvtaeYtlrddgtiaVenrcre.vegklkeiegkAkvedeaseaklkVsFlkeflrievvkgdYwvleldddys 98 
                  d erYlG+WyeiArl + ferg ++vta+Y+ r+dg  +V nr ++ ++++++e  gkA++  ++++a lkVsF++      +++g Y+v++ld+dy+
   EHT98476.1  34 DSERYLGQWYEIARLNHGFERGLEQVTANYSPREDGGLKVVNRGYNpKKQRWQESVGKAYFTGDKQRAALKVSFFG------PFYGGYNVIALDPDYR 125
                  789*******************************************77779*************************......9*************** PP

  Lipocalin_2  99 lalvgspsrkylwilsRtpqlseeqlekllekareqGydvskLirvaq 146
                  +alv  p+r+ylwilsRtpql+++ ++kl+++ar+ G+ v++Li+v+q
   EHT98476.1 126 YALVCGPNRHYLWILSRTPQLDNDVKQKLVQQARQAGFPVDELIWVKQ 173
                  *********************************************987 PP

>> Lipocalin  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   2.8e-14   1.6e-10       2     138 ..      40     169 ..      39     174 .] 0.87

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.8e-14
                 EEEEEEEEEESSGGHHSTTHTTTEEEEEEEEETTTEEEEEEEEEETTE..EEEEEEEEEEE..SSTTEEEEEEEE.STTEEEEEEEEEESSSEEEEEEE CS
   Lipocalin   2 GkWyliasandnsefeeeekklrvyiaeikpteegnlevteiekdggk..ceeesitakkt..eepgklgvefde.yldgrkvkvlttdydnylilylk 95 
                 G Wy+ia  n       +e+ l  ++a+++p e+g l+v+++  + +k  ++e    a  t  ++ + l+v f + + +g +v  l+ dy  y++++  
  EHT98476.1  40 GQWYEIARLN-----HGFERGLEQVTANYSPREDGGLKVVNRGYNPKKqrWQESVGKAYFTgdKQRAALKVSFFGpFYGGYNVIALDPDY-RYALVCGP 132
                 99*******8.....****************************87776665555544444444667889999999*999*9*********.****9999 PP

                 EEETTEEEEEEEEEESSSSEEHHHHHHHHHHHHHTTETGGGEE CS
   Lipocalin  96 kekegkttlvaellsrdpelspelleefkkflkelgideeniv 138
                 +       +++++lsr+p+l+++++++  + +++ g++ ++++
  EHT98476.1 133 NR------HYLWILSRTPQLDNDVKQKLVQQARQAGFPVDELI 169
                 98......9**************************99988776 PP

>> VDE  VDE lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.8e-05      0.17      77     235 ..      23     170 ..      16     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
         VDE  77 vkapsalvkafdlkslegkWyivaGlnpafDvFdCQkhtfsks.ekkklegdlefrvkrpdggfferslveklvqdtksegklfnhdneyLhyeedwyi 174
                  +++ ++v++fd +   g+Wy +a ln+ f     Q    +++ e++ l  ++  r  +p+++ +++s+ +  ++  k+ + l      +  +   + +
  EHT98476.1  23 PPKNVTVVEHFDSERYLGQWYEIARLNHGFERGLEQVTANYSPrEDGGL--KVVNRGYNPKKQRWQESVGKAYFTGDKQRAALKV--SFFGPFYGGYNV 117
                 5677899***********************9988888877765444444..4444555666778888888877776666666666..566688888888 PP

         VDE 175 lgkekdeeeyklvyYrGktdaqkgYeGavvysrsaelpeeaipeveeaakkagldlskfik 235
                 ++    +++y+    +G +    +Y    + sr+++l ++  +++ + a++ag+ ++++i 
  EHT98476.1 118 IAL---DPDYRYALVCGPN---RHYL--WILSRTPQLDNDVKQKLVQQARQAGFPVDELIW 170
                 884...4566666667888...6664..789999999999999999999999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1426.11
//
Query:       EHT98477.1  [L=325]
Description: putative lysyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-47  161.6   0.0      3e-47  161.2   0.0    1.1  1  tRNA-synt_2   tRNA synthetases class II (D, K and N)
  ------ inclusion threshold ------
      0.016   14.7   0.0       0.21   11.0   0.0    2.2  2  tRNA-synt_2d  tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   3.3e-51     3e-47      20     312 ..      14     322 ..       8     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 3.3e-51
                  HHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SS.SS--EEEEETTT..T.....EEE-E-S-SHHHHHHHHHCTHSEEEEEEEEE--S--BTTB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  20 kvlrlrstvtkavrkyleengfieietPiLsksdtee.garlFkvksrek.ek.....effaLtqspqlylellivagidrvfqiaraFRaEdsrtdr 110
                  ++l  r+ +++ vr+++ ++g +e++tP +s++++ +    +F++  r   ++     ++  L  sp+ + ++l++ag + ++q++r+FR+E+    +
   EHT98477.1  14 ANLIKRAGIVAEVRRFFADRGVLEVDTPAMSQATVTDiHLVPFQT--RFVgPGmsdgcDLW-LMTSPEYHMKRLLAAGSGPIYQMGRCFRNEEAGRHH 108
                  68999***************************9543313445555..33332233345555.************************************ PP

                  -S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS.-EEEEHHHHHHHHHTS-SS--HHHHHHHHH.......... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
  tRNA-synt_2 111 hlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkp.fkrltykeaieklneigkdldkaderalvk.......... 197
                  ++ EFt++e + +  ++ ++m+ +++l++++++    +s +  +  ir+    l      + + +ea ekl e +   +++d   l+           
   EHT98477.1 109 NP-EFTMLEWYRPHYDMYRLMNEVDDLLQEVLECDSAESLSYQQAFIRHLD--LDPLsADKTQLREAAEKLGEGELANREEDRDTLLMllfmlgvepk 203
                  **.****************************99886777666666666654..4333379**********8766554444444444448999999998 PP

                  HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHH.....SSSGGGGHHHHHHHHCT--SEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 198 keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgld.....eeaeekfswylealeyGapphgGlglG 290
                    + +p+fv++fPa+   +++ ++ed ++++e+++++++g+El++G  ++ d++e+++++++ +         ++  ++ +l ale G+p  +G++lG
   EHT98477.1 204 IGQDKPCFVYHFPASQAALAEISTED-HRVAERFEVYYKGIELANGFRELTDSREQRQRFEQDNRRraargLPQHPIDHYLLAALEHGMPACSGVALG 300
                  8899**********************.9************************************9988876566777788899*************** PP

                  HHHHHHHHCT-SSGGGCSSS-X CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 291 ldRlvmlllgsesIrdviaFPk 312
                  +dRl+ml l+++s  +viaFP 
   EHT98477.1 301 IDRLIMLALKADSLSEVIAFPV 322
                  *********************6 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.3e-05      0.21     105     148 ..      93     134 ..      78     153 .. 0.74
   2 ?    1.1   0.0     0.026   2.3e+02     214     231 ..     297     314 ..     284     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.3e-05
                   EEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHH CS
  tRNA-synt_2d 105 isigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleel 148
                     +gr+fR+++  + h +eF+ +e      ++ +  l+  +++l
    EHT98477.1  93 YQMGRCFRNEEAGRHHNPEFTMLEWY--RPHYDMYRLMNEVDDL 134
                   468******************99954..3344455555555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.026
                   EEEEHHHHHHHHHT-SSG CS
  tRNA-synt_2d 214 fGlGveRlamlkygieDi 231
                     lG++Rl ml ++ + +
    EHT98477.1 297 VALGIDRLIMLALKADSL 314
                   45899******9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2614.77
//
Query:       EHT98478.1  [L=353]
Description: serine endoprotease, periplasmic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-29  102.1   0.2      9e-29  101.3   0.2    1.4  1  Trypsin_2      Trypsin-like peptidase domain
    1.1e-18   67.8   0.3    2.5e-18   66.7   0.3    1.5  1  Trypsin        Trypsin
    8.9e-16   58.0   0.8    2.6e-15   56.5   0.2    2.0  2  PDZ_2          PDZ domain
    3.1e-11   43.0   0.6    3.1e-11   43.0   0.6    1.8  2  PDZ_6          PDZ domain
    3.5e-11   43.3   0.6    3.5e-11   43.3   0.6    2.5  3  PDZ            PDZ domain
  ------ inclusion threshold ------
       0.17   10.5   2.9       0.49    9.0   0.9    2.1  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.2     3e-32     9e-29       1     150 []      78     212 ..      78     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 3e-32
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsG++ ++ g+ilTn Hv+++ad+  v         a +dgr+++a++v++d  +DlA+lk+   ++ +lp++p+ p++ ++ g+ v ++G+p   +  
  EHT98478.1  78 GSGVIMNAKGYILTNKHVINNADQIIV---------ALQDGRFFEATLVGSDAMTDLAVLKI---TAPNLPVIPINPKRVAHIGDVVMAIGNPYNLGQ- 163
                 9**************************.........****************777*******...***************************888888. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  +v++Gi+s++ +  + +s  + +flqtda++++G+SGG+l++s G++ G+
  EHT98478.1 164 -TVTQGIISATGR-VGLSSSGRQNFLQTDASINQGNSGGALINSLGELMGI 212
                 .************.888899999999***********************98 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.3   8.4e-22   2.5e-18       9     214 ..      52     235 ..      45     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 8.4e-22
                 TTSSTTEEEEEETTC........EEEEEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSS CS
     Trypsin   9 kgsfpwqvslsvksg........khlCgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepv 98 
                 +++ p +v ++++s+        ++l +G++++++ ++lT++H+++na+++ v         ++g        +++ ++ +++++   D+a+lk+++p 
  EHT98478.1  52 RRAVPAVVNVYNRSTqgnnnrgiTTLGSGVIMNAKgYILTNKHVINNADQIIV-------ALQDG--------RFFEATLVGSDA-MTDLAVLKITAP- 133
                 566788888888877888888898899999999999**********9444433.......45677........456666677777.67**********. PP

                 TSBSSBHCCBBCSTTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEE CS
     Trypsin  99 klgdtvrpiclpaassslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivs 197
                   +  v pi+  +      ++ +++v+++g++++ g  +t++++ ++++ r   +s+     ++n+l+++a     +++qG+SGG+l++s gel+Gi++
  EHT98478.1 134 --NLPVIPINPKR-----VAHIGDVVMAIGNPYNLG--QTVTQGIISATGRVGLSSS----GRQNFLQTDA-----SINQGNSGGALINSLGELMGINT 214
                 ..*******9999.....56667*************..************9877775....579*******.....9********************** PP

                 EE.SSSSCTTS...EEEEEEG CS
     Trypsin 198 wg.kgcakgnr...pgvytkv 214
                    ++ ++g++   +g++++ 
  EHT98478.1 215 LTfDKSSDGETpegIGFAIPT 235
                 998777777775566777665 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.92   2.7e+03      22      42 ..     138     156 ..     122     165 .. 0.74
   2 !   56.5   0.2   8.7e-19   2.6e-15       2      81 ..     255     344 ..     254     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.92
                 -TTSGGGGT.--TT-EEEEET CS
       PDZ_2  22 keggPaakaglkagDvilkvd 42 
                  + +P      ++gDv+++++
  EHT98478.1 138 IPINPKRV--AHIGDVVMAIG 156
                 55555333..37899999987 PP

  == domain 2  score: 56.5 bits;  conditional E-value: 8.7e-19
                 ...XX------............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2   2 ylGvsvsdeed..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevk 81 
                 y+G++ +++ +           +g++v  V++ggPa+kag++++Dv+l+v+gk+  s ++   ++++ +pG+ + ++vlR++kk+t+ v+
  EHT98478.1 255 YIGITGREVPPlhgqgnsldrVQGIIVSVVRPGGPADKAGIEPNDVLLSVNGKPAISAQETMDQVAEIRPGSVIDVQVLRNDKKLTLPVT 344
                 6777777666677777777778899*99***********************************************************998 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.1   9.3e+03      18      26 ..     148     156 ..     147     157 .. 0.83
   2 !   43.0   0.6     1e-14   3.1e-11       1      41 [.     280     322 ..     280     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
       PDZ_6  18 vGDiilsvN 26 
                 +GD++ +++
  EHT98478.1 148 IGDVVMAIG 156
                 59**99997 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 1e-14
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqp..veglsladvaal 41 
                 +V+ V pg+PAd+AG++++D++lsvNG+p    ++++++va++
  EHT98478.1 280 IVSVVRPGGPADKAGIEPNDVLLSVNGKPaiSAQETMDQVAEI 322
                 599**************************65567777777776 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.8   2.4e+03      45      55 ..     147     157 ..     140     167 .. 0.83
   2 ?   -2.7   0.1       2.7   8.1e+03       9      30 ..     173     193 ..     169     203 .. 0.68
   3 !   43.3   0.6   1.2e-14   3.5e-11       8      81 ..     252     332 ..     245     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.8
                 STTEEEEEETT CS
         PDZ  45 kvGDkIlsvNg 55 
                 ++GD+++++++
  EHT98478.1 147 HIGDVVMAIGN 157
                 89*******98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
                 TSESSEEEEEETTSSSSSSEEE CS
         PDZ   9 rgglGfslkggsdqrgdkgifv 30 
                 +g++G+s +g ++   ++ + +
  EHT98478.1 173 TGRVGLSSSGRQNFL-QTDASI 193
                 688999999988775.444444 PP

  == domain 3  score: 43.3 bits;  conditional E-value: 1.2e-14
                 TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTS.HHHHHHHHHHTTTSEEEEEE CS
         PDZ   8 grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenv.sheeavqaikgskgkvtLti 81 
                  rg++G+++++    +         +gi+vs v pgg+a+++g++++D++lsvNg++  +  + +++v++i++ + ++ +++
  EHT98478.1 252 IRGYIGITGREVPPLHgqgnsldRVQGIIVSVVRPGGPADKAGIEPNDVLLSVNGKPAISAqETMDQVAEIRPGS-VIDVQV 332
                 6899999999999988999999999***********9999999************88776648899999999875.666655 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.036   1.1e+02      47      69 ..      76      98 ..      59     102 .. 0.84
   2 ?    9.0   0.9   0.00017      0.49     624     651 ..     185     213 ..     147     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.036
                   TTEE-EE-STT-EEEE-HHHHHH CS
  Peptidase_S46 47 ggCtasfVSpeGLvlTNHHCayg 69
                      ++ +  ++G +lTN H++ +
     EHT98478.1 76 TLGSGVIMNAKGYILTNKHVINN 98
                   56799**************9865 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00017
                    EEE.ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 624 nfl.stnDitGGNSGSPvlngkgelvGla 651
                    nfl +++ i  GNSG +++n+ gel G++
     EHT98478.1 185 NFLqTDASINQGNSGGALINSLGELMGIN 213
                    55536788999****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2657.92
//
Query:       EHT98479.1  [L=458]
Description: serine endoprotease, periplasmic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-30  106.1   0.6    4.8e-30  105.4   0.6    1.4  1  Trypsin_2      Trypsin-like peptidase domain
    2.7e-29  101.3   7.3    2.2e-16   60.0   0.2    3.2  3  PDZ            PDZ domain
    1.2e-24   86.4   5.3    2.1e-16   60.0   0.1    2.8  3  PDZ_2          PDZ domain
    1.1e-19   70.0   1.2    5.4e-10   39.0   0.0    2.7  2  PDZ_6          PDZ domain
    8.1e-17   61.8   0.1    1.5e-16   60.9   0.1    1.4  1  Trypsin        Trypsin
     0.0025   17.7   1.0       0.24   11.4   0.1    2.9  2  Tricorn_PDZ    Tricorn protease PDZ domain
      0.005   16.8   0.1       0.18   11.9   0.0    2.6  2  PDZ_1          PDZ-like domain
      0.008   15.9   1.1       0.15   11.7   0.2    2.2  2  DUF3394        Domain of unknown function (DUF3394)
  ------ inclusion threshold ------
      0.024   13.3   0.6       0.34    9.5   0.7    2.0  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.6   2.4e-33   4.8e-30       1     150 []      95     231 ..      95     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 2.4e-33
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggek 98 
                 GsG+++++  g++lTn+Hvv++ad+ +v            dg e++ak+++ d+++D+Al+++  + +++l  +++++s++lk+g+ ++++G+p g + 
  EHT98479.1  95 GSGVIIDAAkGYVLTNNHVVNGADKINV---------QLGDGSEYDAKLIGHDEQTDIALIQI--QGAKNLTQIKVADSDQLKVGDFAVAIGNPFGLGQ 182
                 9******99679****************.........**************************..*********************************9 PP

   Trypsin_2  99 sgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   +++sGi+s++ + ++ + +  e+f+qtdaa+++G+SGG+l++ +G+++G+
  EHT98479.1 183 --TATSGIISALGR-SGLNLEGLENFIQTDAAINRGNSGGALVNLNGELIGI 231
                 ..9***********.999999999***************************8 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.6   3.2e+03      39      55 ..     160     176 ..     152     182 .. 0.78
   2 !   60.0   0.2   1.1e-19   2.2e-16       6      81 ..     265     348 ..     260     349 .. 0.94
   3 !   44.0   0.6   1.1e-14   2.2e-11      12      81 ..     379     446 ..     368     447 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
                 HHHHTSSTTEEEEEETT CS
         PDZ  39 aeadglkvGDkIlsvNg 55 
                 a+ d lkvGD  +++++
  EHT98479.1 160 ADSDQLKVGDFAVAIGN 176
                 55555*****8888875 PP

  == domain 2  score: 60.0 bits;  conditional E-value: 1.1e-19
                 TS.TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   6 ke.grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                  e +rg+lG+++ +++++        +++g+fvsevlp +aa+++g+k GD+I+svN++++++++++++ + ++ +++kv+L +
  EHT98479.1 265 GEvKRGQLGIKGTEMTADMakafnvdAQRGAFVSEVLPQSAAQKAGIKSGDIIVSVNDKPITSFAELRVKIGTTAPGEKVKLGL 348
                 45589************999*************************************************************976 PP

  == domain 3  score: 44.0 bits;  conditional E-value: 1.1e-14
                 SSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  12 lGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                  G++l+ g+ + gdkg+ +  +++g +ae+ gl+++D+I++vN + v n++++++v++ k++  +++L++
  EHT98479.1 379 QGATLSDGQTKTGDKGVKIDGIEKGTPAEQVGLQKDDVIIGVNRTRVQNIAEMRKVLEAKPP--VLALNV 446
                 599999999999*************9999999*****************************9..788876 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.1   6.2e+03      45      67 ..     123     145 ..     103     159 .. 0.72
   2 !   60.0   0.1     1e-19   2.1e-16      12      82 .]     281     361 ..     270     361 .. 0.88
   3 !   28.1   0.4   9.7e-10   1.9e-06      11      61 ..     387     440 ..     377     452 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                 --SSHHHHHHHHHTS-TT-EEEE CS
       PDZ_2  45 kvksledlislllkkkpGdtVkl 67 
                 ++ ++++ + +l ++++++++ l
  EHT98479.1 123 QLGDGSEYDAKLIGHDEQTDIAL 145
                 45677777788888888887766 PP

  == domain 2  score: 60.0 bits;  conditional E-value: 1e-19
                 -............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2  12 d..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                            ++g+ v +V +++ a+kag+k+gD+i++v++k+++s ++l+ ++ ++ pG++Vkl +lR+gk  +vev+l
  EHT98479.1 281 AdmakafnvdaQRGAFVSEVLPQSAAQKAGIKSGDIIVSVNDKPITSFAELRVKIGTTAPGEKVKLGLLREGKPVSVEVTL 361
                 4455555555589******************************************************************97 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 9.7e-10
                 --.....-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-T CS
       PDZ_2  11 ed...tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkp 61 
                 ++   ++gv +  +++g+Pa++ gl+++Dvi+ v+ ++v++ +++++ l +k p
  EHT98479.1 387 QTktgDKGVKIDGIEKGTPAEQVGLQKDDVIIGVNRTRVQNIAEMRKVLEAKPP 440
                 44455789*************************************999987665 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.7e-13   5.4e-10       1      51 [.     296     345 ..     296     350 .. 0.85
   2 !   29.2   0.3     3e-10   5.9e-07       3      52 ..     398     444 ..     396     448 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.7e-13
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvv 51 
                 +V++V p s A +AG++ GDii+svN++p+  +s a+++  +  +++ge+v 
  EHT98479.1 296 FVSEVLPQSAAQKAGIKSGDIIVSVNDKPI--TSFAELRVKIGtTAPGEKVK 345
                 79****************************..****9986666566666665 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3e-10
       PDZ_6   3 taVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvl 52 
                   +++g+PA++ Gl+  D+i+ vN + v  +++a+ +  l+ + +  + l
  EHT98479.1 398 DGIEKGTPAEQVGLQKDDVIIGVNRTRV--QNIAEMRKVLE-AKPPVLAL 444
                 56899***********************..*******9998.55555555 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   7.6e-20   1.5e-16      28     216 ..      96     253 ..      85     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 7.6e-20
                 EEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEE CS
     Trypsin  28 gGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclv 124
                 +G++i++   +vlT++H+v++a++++v lg       +g+e ++k+         +++t   Dial++++      ++   i+ ++ s++l+vg  +++
  EHT98479.1  96 SGVIIDAAkgYVLTNNHVVNGADKINVQLG-------DGSEYDAKLIG------HDEQT---DIALIQIQGA----KNLTQIKVAD-SDQLKVG--DFA 171
                 5888887777**********9777766444.......56544444444......45555...*********9....8889999999.7767777..*** PP

                 EESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS.EEEEEEGGG CS
     Trypsin 125 sGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvytkvss 216
                 +++g+++  g  +t +++ ++++ r+  + +      en+++++a     ++++G+SGG+lv+ +gel+Gi+++    + gn  +g++++ ++
  EHT98479.1 172 VAIGNPFGLG--QTATSGIISALGRSGLNLE----GLENFIQTDA-----AINRGNSGGALVNLNGELIGINTAILASSGGNIgIGFAIPSDM 253
                 **********..9999999999999855553....459*******.....*************************777777766999998775 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00012      0.24       4      78 ..     276     350 ..     270     360 .. 0.69
   2 ?    4.0   0.1     0.024        48      32      67 ..     405     438 ..     393     452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                  SEEEEEE.TTEEEEEEE-BS-TTSSS-B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTT.TSEEEEEEE- CS
  Tricorn_PDZ   4 Gadleld.kgayriakilpGdswdeearSPLaepGvnvreGdlilavdgepvskekgiaelLvgka.gkeveLtvkr 78 
                  G +++ d ++a++++       ++   +S+ ++ G++   Gd+i++v+++p+++ +++   +  +a g++v+L + r
   EHT98479.1 276 GTEMTADmAKAFNVDAQRGAFVSEVLPQSAAQKAGIK--SGDIIVSVNDKPITSFAELRVKIGTTApGEKVKLGLLR 350
                  456666644667776544444455567899999***9..9************9988877666555435777777766 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.024
                  GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTT CS
  Tricorn_PDZ  32 PLaepGvnvreGdlilavdgepvskekgiaelLvgk 67 
                  P ++ G++  + d+i+ v++ +v++ +++ ++L+ k
   EHT98479.1 405 PAEQVGLQ--KDDVIIGVNRTRVQNIAEMRKVLEAK 438
                  66677777..89*******************99876 PP

>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   8.8e-05      0.18      17      67 ..     278     330 ..     273     335 .. 0.89
   2 ?    1.9   0.1      0.11   2.2e+02      48      73 ..     411     436 ..     377     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.8e-05
       PDZ_1  17 dLsyqlarsyaipvk.gvyvseasgsfklssk.ekkgviitsinnqptpnLde 67 
                 +++  +a  +++  + g +vse   +++ ++  +k+g ii s+n++p+ +  e
  EHT98479.1 278 EMTADMAKAFNVDAQrGAFVSEVLPQSAAQKAgIKSGDIIVSVNDKPITSFAE 330
                 6899999999999888********999997767**************987665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
       PDZ_1  48 ekkgviitsinnqptpnLdefievvk 73 
                  +k+ +i  +n++ ++n  e+ +v++
  EHT98479.1 411 LQKDDVIIGVNRTRVQNIAEMRKVLE 436
                 567788999***********999986 PP

>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.055   1.1e+02     122     149 ..     294     321 ..     271     327 .. 0.87
   2 !   11.7   0.2   7.8e-05      0.15      86     152 ..     350     424 ..     326     436 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.055
     DUF3394 122 kvlvdevefgspaekagldfdfeiveve 149
                  + v+ev  +s a+kag+++++ iv+v+
  EHT98479.1 294 GAFVSEVLPQSAAQKAGIKSGDIIVSVN 321
                 56799******************99985 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.8e-05
     DUF3394  86 legeeiektvalplgeeatgeerLeaaGl...tlleedg.......kvlvdevefgspaekagldfdfeivevevpa 152
                  eg++++ +v+l+ ++++t++++L +  l   tl +  g        v++d +e g+pae+ gl+ d+ i+ v+  +
  EHT98479.1 350 REGKPVSVEVTLEQSAQTTASAQLLSPALqgaTLSD--GqtktgdkGVKIDGIEKGTPAEQVGLQKDDVIIGVNRTR 424
                 468999999999999988888886554442102222..12344444899*********************9998765 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.054   1.1e+02      45      69 ..      91     116 ..      87     123 .. 0.86
   2 ?    9.5   0.7   0.00017      0.34     627     651 ..     208     232 ..     201     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.054
                    ETTTEE-EE-.STT-EEEE-HHHHHH CS
  Peptidase_S46  45 flggCtasfV.SpeGLvlTNHHCayg 69 
                    f g  ++ ++ +++G vlTN H++ g
     EHT98479.1  91 FEGLGSGVIIdAAKGYVLTNNHVVNG 116
                    78899999995689********9976 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00017
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG +++n +gel+G++
     EHT98479.1 208 TDAAINRGNSGGALVNLNGELIGIN 232
                    5677888****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3173.31
//
Query:       EHT98480.1  [L=133]
Description: uncharacterized DUF1043 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-45  153.0   0.0      4e-45  152.8   0.0    1.0  1  DUF1043         Protein of unknown function (DUF1043)
    0.00082   18.7   0.0     0.0011   18.3   0.0    1.1  1  HemX            HemX, putative uroporphyrinogen-III C-methylt
     0.0067   16.2   0.9     0.0088   15.8   0.9    1.1  1  LXG             LXG domain of WXG superfamily
  ------ inclusion threshold ------
      0.024   14.5   1.3      0.032   14.1   1.3    1.1  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.077   12.8   0.0        0.1   12.4   0.0    1.1  1  PCYCGC          Protein of unknown function with PCYCGC motif
      0.084   12.6   0.1       0.14   11.9   0.1    1.3  1  MctB            Copper transport outer membrane protein, MctB
       0.15   12.4   0.7       0.49   10.8   0.7    1.7  2  DUF3496         Domain of unknown function (DUF3496)
       0.18    9.9   0.0       0.21    9.7   0.0    1.0  1  KAP             Kinesin-associated protein (KAP)


Domain annotation for each model (and alignments):
>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   1.8e-48     4e-45       2     122 ..       7     126 ..       6     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 1.8e-48
     DUF1043   2 liglvvGiiiGalilrltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeLlpeleeqelfqqkkleekkae 100
                 liglvvGii+Ga+++r++n+kl++q++++ el+k+kael+++++el++HfaqsaelL+++a+dy++Lyqh+ak+s+ Llp+++ +++++  +l+e++a+
  EHT98480.1   7 LIGLVVGIIVGAVAMRFGNRKLREQRSMQYELDKTKAELADYREELTNHFAQSAELLDNMARDYRQLYQHMAKGSNDLLPNMPGDKNPFAWQLTEAEAD 105
                 79***********************************************************************************************99 PP

     DUF1043 101 aeeeeeeeqPrDYsegasgllk 122
                 +++++  + PrDYsegasgll+
  EHT98480.1 106 NDQAPV-QMPRDYSEGASGLLR 126
                 986555.56***********97 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.9e-07    0.0011       7     113 ..       5     103 ..       2     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.9e-07
        HemX   7 lallallvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqq.lskvsga.e 103
                  +l+ l+v++ vga ++ +g+ +  e+++++ el+++ a+l +  ++          l+++++q ae l++ ++   ql +++++ ++  l ++ g  +
  EHT98480.1   5 YGLIGLVVGIIVGAVAMRFGNRKLREQRSMQYELDKTKAELADYREE----------LTNHFAQSAELLDNMARDYRQLYQHMAKGSNDlLPNMPGDkN 93 
                 57999******************977777777777776666666666..........777788888888887777777766666555441567777767 PP

        HemX 104 rkdWlLaeAd 113
                 +  W L+eA+
  EHT98480.1  94 PFAWQLTEAE 103
                 8899999887 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   3.9e-06    0.0088     150     199 ..      34      83 ..      25      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.9e-06
         LXG 150 akkkvqetiekledfdqeqksalanlesdlkalktyvseLeemtskgkis 199
                 ++ ++++t   l d+ +e+++ +a++ + l+ +++ +++L +++ kg+++
  EHT98480.1  34 MQYELDKTKAELADYREELTNHFAQSAELLDNMARDYRQLYQHMAKGSND 83 
                 566789999**************************************986 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.3   1.4e-05     0.032      39      82 ..      31      74 ..      22      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                    HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHH CS
  Apolipoprotein 39 rarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteel 82
                    ++ ++ el+  +a l++yr+e+ + ++q++e l++    y + +
      EHT98480.1 31 QRSMQYELDKTKAELADYREELTNHFAQSAELLDNMARDYRQLY 74
                    6678999999*******************999998766665544 PP

>> PCYCGC  Protein of unknown function with PCYCGC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.7e-05       0.1      18      73 ..      29      89 ..      10      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.7e-05
      PCYCGC 18 aeq...eadhaehsassgdiqee.tasadvlPtfldeqdeeiktiyeeaak.srellekiP 73
                 eq   + + ++ +a+ +d +ee t+   +   +ld+++ + +++y++ ak s++ll ++P
  EHT98480.1 29 REQrsmQYELDKTKAELADYREElTNHFAQSAELLDNMARDYRQLYQHMAKgSNDLLPNMP 89
                3332222222233346789887647888999****************99884689**9999 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.1e-05      0.14      16      75 ..       8      69 ..       7      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.1e-05
        MctB 16 LALavGivlGsgvlsd..nlldtlegqveelreekeelraeadaleaqleaaddfaaavapr 75
                ++L vGi++G+ +++   + l + ++ + el++ k el + +++l++  +++ ++ +++a +
  EHT98480.1  8 IGLVVGIIVGAVAMRFgnRKLREQRSMQYELDKTKAELADYREELTNHFAQSAELLDNMARD 69
                799********9986432668888888889******************99999999999865 PP

>> DUF3496  Domain of unknown function (DUF3496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00022      0.49      41      79 ..      28      66 ..      25      87 .. 0.86
   2 ?   -0.3   0.0      0.63   1.4e+03      32      47 ..      69      84 ..      67      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
     DUF3496 41 lkvrksLsnklnktnerLaevstkllvekeqnrsllstl 79
                l+ ++s++++l+kt+  La+ + +l++   q+  ll  +
  EHT98480.1 28 LREQRSMQYELDKTKAELADYREELTNHFAQSAELLDNM 66
                67789*********************9999999888765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
     DUF3496 32 kykqlyleelkvrksL 47
                 y+qly+   k ++ L
  EHT98480.1 69 DYRQLYQHMAKGSNDL 84
                69****9999988876 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.5e-05      0.21     202     266 ..       9      74 ..       5      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.5e-05
         KAP 202 slivqykigalvmdvidyelkryetlreeldkkkk.aaeekpilkkdyekslkklkilvkkqeqll 266
                 +l+v   +ga++m   + +l+   +++ eldk k   a+   +l +++ +s   l  +++   ql 
  EHT98480.1   9 GLVVGIIVGAVAMRFGNRKLREQRSMQYELDKTKAeLADYREELTNHFAQSAELLDNMARDYRQLY 74 
                 6889999************************98852677788889999999988888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      889  (0.0495845); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 969.42
//
Query:       EHT98481.1  [L=375]
Description: AFG1 family ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.6e-150  498.8   0.1   8.9e-150  498.6   0.1    1.0  1  AFG1_ATPase  AFG1-like ATPase


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.6   0.1    5e-154  8.9e-150       2     360 ..       5     370 ..       4     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 498.6 bits;  conditional E-value: 5e-154
  AFG1_ATPase   2 tprqryekelqrgeivadaaqaeavealdrlteelaa.qdlarks.....salgklfgrkr.ksvepvrglYlwGgvGrGKtylmdlffeslpvekkr 92 
                  +p +rye++l +g++ +d++q ea+++ld +++ l+a q++++++     ++l kl+g+ + + ++pvrglY+wGgvGrGKt++mdlff+s+p+++k 
   EHT98481.1   5 SPLARYEQALSQGDFKPDDVQREAITRLDAIQQGLIArQQTTEPAsqglfGRLSKLMGKEKsQFKTPVRGLYMWGGVGRGKTWVMDLFFQSIPGNRKL 102
                  5789*****************************665515555666788888899999986647789******************************** PP

  AFG1_ATPase  93 rvhfhafmarvhdeltklrkekdplaivadrlaeearvlCfDEfevsDiadamllsrLleaLfargvtlvaTSNiaPedLykdglqrqrFLpaIdlle 190
                  r+hfh+fm+rvh+elt+l++++dpl i+adr+++e+++lCfDEf+vsDi+damll++L+eaLf+rg++lvaTSNi+P++Lyk+glqr+rFLpaI+ ++
   EHT98481.1 103 RLHFHRFMLRVHEELTELQGHSDPLLIIADRFKAETDILCFDEFFVSDITDAMLLGTLMEALFERGISLVATSNIPPDNLYKNGLQRARFLPAIEQIK 200
                  ************************************************************************************************** PP

  AFG1_ATPase 191 shlevlevdggvDYRlrklrqaevylapldeaaeaaldklfkeltsgepeaestlevkaRklrvraaagdlvrfsfaelceaarsqsdYlalaerfht 288
                  +h++v++vd+g DYRlr+l+ a+++++pl+ ++ a++d++f++l   +++++  le+++Rk+ +  + +++v+++f++lc + rsq+dY++l++rfh+
   EHT98481.1 201 QHCDVMNVDAGIDYRLRTLTSAHLWKSPLGPETYADMDRMFQALSGEKRDSAPVLEINHRKMPTLGVSEGVVAIDFKTLCGEGRSQHDYIELSRRFHS 298
                  ************************************************************************************************** PP

  AFG1_ATPase 289 vlledVpvltkakedaarRfiaLvDelYdadvklvvsaevaleelyeagrlefefeRtaSRLlelqsedyla 360
                  vll dVpv+   +ed+arRf aLvDe+Y+++vklvv ae+ l e+y++ rl+fe++R++SRL+e+qse+yl+
   EHT98481.1 299 VLLFDVPVMIYKTEDQARRFLALVDEFYERHVKLVVAAETSLFEIYQGTRLKFEYQRCLSRLQEMQSEEYLR 370
                  **********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2883.70
//
Query:       EHT98482.1  [L=142]
Description: 50S ribosomal subunit protein L13 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-57  191.0   0.3    8.5e-57  190.8   0.3    1.0  1  Ribosomal_L13  Ribosomal protein L13
  ------ inclusion threshold ------
      0.066   13.9   0.0      0.085   13.6   0.0    1.2  1  IMS_C          impB/mucB/samB family C-terminal domain
       0.13   12.2   0.0        0.2   11.6   0.0    1.3  1  DUF3659        Protein of unknown function (DUF3659)


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   0.3   1.4e-60   8.5e-57       2     125 .]      15     138 ..      14     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 1.4e-60
                    EEEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS- CS
  Ribosomal_L13   2 WyviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmLp 97 
                    Wyv+DA+g++lgrla+++a++LrGkhk++ytphvd+Gdy++v+naekva+tg+k ++k+yy+htg++gg+k++t++e+++++pe+++e aVkgmLp
     EHT98482.1  15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRSDKIYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP 110
                    ************************************************************************************************ PP

                    SSHHHHHHGCTEEEESSSTTSGGGGSCE CS
  Ribosomal_L13  98 knklgrrrlkrLkvyageehpheaqkpe 125
                    k+ lgr+++++Lkvyag+eh+h+aq+p+
     EHT98482.1 111 KGPLGRAMYRKLKVYAGNEHNHAAQQPQ 138
                    **************************96 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05     0.085      27     113 ..      22     135 ..       2     139 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
       IMS_C  27 kkelreLaeelarrLrdkg.......l................vartitlklrysdfh.....asrsatLpr..ptsdtreileaalkLlrrlidepgl 95 
                  k l +La+elarrLr k+       +                ++++ + k+ y+  h       ++at+++  ++  +r i+ a++ +l +  +    
  EHT98482.1  22 GKTLGRLATELARRLRGKHkaeytphVdtgdyiivlnaekvavTGNKRSDKIYYH--HtghigGIKQATFEEmiARRPERVIEIAVKGMLPKGPL-GRA 117
                 456779*********9999555544404445445453333333444444444433..12346666777775543559999999999999988888.999 PP

       IMS_C  96 pirligvsasnlvekaes 113
                  +r++ v a+n  + a++
  EHT98482.1 118 MYRKLKVYAGNEHNHAAQ 135
                 999999999986645544 PP

>> DUF3659  Protein of unknown function (DUF3659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.4e-05       0.2       7      37 ..      10      40 ..       7      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
     DUF3659  7 kvnkaGevvdeeGnvvGrvveGdlkkLaGkk 37
                +v+++  vvd++G+++Gr++   + +L Gk 
  EHT98482.1 10 TVQRDWYVVDATGKTLGRLATELARRLRGKH 40
                6788889**************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1143.60
//
Query:       EHT98483.1  [L=130]
Description: 30S ribosomal subunit protein S9 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-46  157.7   0.7    1.8e-46  157.6   0.7    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16
  ------ inclusion threshold ------
      0.062   13.2   0.0      0.099   12.5   0.0    1.3  1  Flg_hook      Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.7   2.1e-50   1.8e-46       1     121 []      10     130 .]      10     130 .] 0.99

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 2.1e-50
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrK+s+Arv ik+g+g+i++n++sle+Yf +e+ar+ v +pl+l++++gk+d +++vkgGG+sgqa+Air+gi+raL++++++ + eL+kag++tr
    EHT98483.1  10 GRRKSSSARVFIKPGSGNIVINQRSLEQYFGRETARMVVRQPLELVDMVGKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTR 106
                   9*****************************99***************************************************77************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   D+R+vErkK+g++kAR+++q+skR
    EHT98483.1 107 DARQVERKKVGLRKARRRPQFSKR 130
                   ***********************9 PP

>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.1e-05     0.099      25      74 ..      59     108 ..      55     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
                 EEEEEEEEEETTEEEEEEEE-SCHHHHHHHHTHHHHHHHHHCCTTCCEEE CS
    Flg_hook  25 GkvevkltlrggqlsvqltaenpetrelLeqnlprLreaLaaaGlklddl 74 
                 Gk+++ +t++gg++s q  a +    ++L +  ++Lr +L++aG+   d+
  EHT98483.1  59 GKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDA 108
                 9*******************************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1148.28
//
Query:       EHT98484.1  [L=213]
Description: stringent starvation protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-20   70.9   0.0      8e-18   64.6   0.0    2.1  2  GST_N         Glutathione S-transferase, N-terminal domain
      3e-16   59.6   0.0      1e-15   57.9   0.0    1.8  2  GST_N_3       Glutathione S-transferase, N-terminal domain
    7.3e-13   48.6   0.1    1.6e-12   47.5   0.1    1.5  2  GST_N_2       Glutathione S-transferase, N-terminal domain
      7e-12   45.4   0.0      1e-11   44.9   0.0    1.3  1  GST_C         Glutathione S-transferase, C-terminal domain
    9.2e-08   32.0   0.0    1.6e-07   31.2   0.0    1.4  1  GST_C_2       Glutathione S-transferase, C-terminal domain
    0.00018   21.6   0.0    0.00042   20.5   0.0    1.6  2  Glutaredoxin  Glutaredoxin
  ------ inclusion threshold ------
       0.05   14.2   0.0       0.28   11.8   0.0    2.0  2  GST_C_5       Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   3.1e-21     8e-18       2      76 .]      10      81 ..       9      81 .. 0.94
   2 ?    4.3   0.0      0.02        50      36      65 ..     126     157 ..     112     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 3.1e-21
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYiar 76
                v+tl+s+++++++h++r++la+kgv++e+ ++++++ +   ++l++lnp+  vP+L+d++++l ESr+I+eY+++
  EHT98484.1 10 VMTLFSGPTDIFSHQVRIVLAEKGVSVEIEQVEMDNLP---QDLIDLNPYRTVPTLVDRELTLYESRIIMEYLDE 81
                79*******************************95554...79******************************85 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.02
                 TTTCGGC.HHHHHHCTT.S-SSEEEETTEEEE CS
       GST_N  36 eageeks.pellklnpl.gkvPaLedngkklt 65 
                 ea++++  +ell + pl g +P +  +++ l+
  EHT98484.1 126 EAARKQLrEELLAIAPLfGGSPFFMSDEFSLV 157
                 344555569******************99987 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   3.9e-19     1e-15       1      75 []      13      87 ..      13      87 .. 0.95
   2 ?   -1.6   0.0       1.4   3.7e+03      30      59 ..     128     158 ..     113     159 .. 0.64

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 3.9e-19
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-GGG CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLeddgealtdSlaIidyLeelypgpp 75
                L++ p+  ++  vr++L ekg++ve++ v+ ++ ++ l   np+++vP+L+d +  l++S+ I++yL+e++p pp
  EHT98484.1 13 LFSGPTDIFSHQVRIVLAEKGVSVEIEQVEMDNLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEYLDERFPHPP 87
                56667778999************************************************************9876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                 -TTTTHHHHHHH-TT.--SSEEETTS-EEES CS
     GST_N_3  30 tpgehdeellaknpl.gkvPvLeddgealtd 59 
                   ++ +eella+ pl g  P+++ d+ +l d
  EHT98484.1 128 ARKQLREELLAIAPLfGGSPFFMSDEFSLVD 158
                 4455578888888643667777777776665 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1   6.3e-16   1.6e-12       4      69 ..      21      81 ..      20      82 .. 0.92
   2 ?   -2.9   0.0       3.5     9e+03      35      50 ..     134     166 ..     119     168 .. 0.56

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 6.3e-16
                HHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  4 wahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                ++h v+i+la+kg+  +i+ v    + ++ ++++ +lnp+ tVP+L+d     ++eS+ I++yl++
  EHT98484.1 21 FSHQVRIVLAEKGVSVEIEQV----EMDNLPQDLIDLNPYRTVPTLVD-RELTLYESRIIMEYLDE 81
                89*******************....45677889**************9.558************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
                 HHHHHHCTTT.................SSSEEE CS
     GST_N_2  35 eefprlnprg.................tVPvLw 50 
                 ee++++ p++                   P+Lw
  EHT98484.1 134 EELLAIAPLFggspffmsdefslvdcyLAPLLW 166
                 455555555444444444444444444556666 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.1e-15     1e-11       2      93 .]     102     194 ..     101     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 4.1e-15
                 HHHHHHHHHHHHSTTH.HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C   2 adlisqilllfyvkae.ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 ++ +++ ++++++++  + + +++++a+++++e l a+   + ++ +++ d+++l+D++l+p+l++l++ g++++  + ++lk +++r+++r+
  EHT98484.1 102 MMHRIEQGWYSLMRKVeNSSVQEAEAARKQLREELLAIAPLFGGSPFFMSDEFSLVDCYLAPLLWRLPSMGIDLLGSGSKELKGYMNRVFERD 194
                 788999999999999844556799999***************************************************************996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   6.3e-11   1.6e-07       3      66 ..     124     186 ..     108     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 6.3e-11
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----.TT-HHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdir.eaypnlraW 66 
                 + e+a++ql++ l a++ + ++spf+  d+++l+D+ lap l+rl   g  +d+  ++ + l+ +
  EHT98484.1 124 EAEAARKQLREELLAIAPLFGGSPFFMSDEFSLVDCYLAPLLWRLPSMG--IDLLgSGSKELKGY 186
                 56889***************************************95555..44444555555555 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.6e-07   0.00042       3      54 ..      13      63 ..      11      67 .. 0.91
   2 ?   -3.3   0.0       4.4   1.1e+04      35      43 ..     126     134 ..     119     140 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.6e-07
                  EEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEE CS
  Glutaredoxin  3 lftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvf 54
                  lf+ pt  ++++++ +L e+gv++e+ +v++d ++ ++l +l+++rtvP+++
    EHT98484.1 13 LFSGPTDIFSHQVRIVLAEKGVSVEIEQVEMD-NLPQDLIDLNPYRTVPTLV 63
                  666666679**********************9.****************987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.4
                   HHHHHHHHH CS
  Glutaredoxin  35 eeireelke 43 
                   e++r++l+e
    EHT98484.1 126 EAARKQLRE 134
                   444444444 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.74   1.9e+03      73      92 ..       7      27 ..       3      36 .. 0.77
   2 ?   11.8   0.0   0.00011      0.28      19      74 ..     112     169 ..     105     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.74
                HHHHCCCCCT.--CCCT-HHH CS
     GST_C_5 73 lkavlsyyaG.ydlfakaPrl 92
                 ++v++ ++G  d+f++  r+
  EHT98484.1  7 KRSVMTLFSGpTDIFSHQVRI 27
                5889999955389**998765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
                 HHHHCTT-HHHHHHHHHHHHHH.HHHHCCHT..SSSSECCECC--HHHHHHHHHHHHHH CS
     GST_C_5  19 glvrdplseekrkelddnaayl.edllakhq..geGPyfldkelsmadvavvPflvrlk 74 
                 +l+r+  ++   +e + +  +l e+lla  +  g  P+f+ +e+s+ d  + P+l rl 
  EHT98484.1 112 SLMRKV-ENSSVQEAEAARKQLrEELLAIAPlfGGSPFFMSDEFSLVDCYLAPLLWRLP 169
                 555555.33333333444344437888888887999*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1523.17
//
Query:       EHT98485.1  [L=161]
Description: ClpXP protease specificity-enhancing factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-44  149.3   0.0    9.4e-44  149.1   0.0    1.0  1  SspB      Stringent starvation protein B


Domain annotation for each model (and alignments):
>> SspB  Stringent starvation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   5.3e-48   9.4e-44       2     160 .]       9     161 .]       8     161 .] 0.87

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 5.3e-48
                 SHHHHHHHHHHHHHHHHCCCTT.-ET..EEEEEETTSTT-BS-HHHHGGGSBTTEEEEE...CCEEEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEE CS
        SspB   2 lrpyalRavvrwvldevaeene.lpehhFyitvdtdapgVkvperLreeypeemtIvLq...hafsdLevtedafevglrFggvpeklvvPfaavlafy 96 
                 +rpy+lRa+++w+ld     n+ +p    +++vd ++pgV+vp     ey+++++IvL+   +a+ +Le++++++++++rFggvp+++ vP+aa+la+y
  EHT98485.1   9 RRPYLLRAFYDWLLD-----NQlTP----HLVVDINLPGVQVP----LEYARDGQIVLNiapRAVGNLELGNEEVSFNARFGGVPRQVNVPMAAILAIY 94 
                 69*************.....*****....**************....**************************************************** PP

                 ETTTTEEEE-.--BGGGCHT.TSXXSSCXXXXXXXX............XXXXXXXXXXXXXXXXXXXX. CS
        SspB  97 dpevgfglqFeeaeeaeeeeeeeeaeeeeeaaeeea.....keeeeeaeeaedeeapkekkrpglkvVk 160
                 ++e+g+g++F e+e+a+e ++++   e++e++ ++       ++++++++++d+++p +++rp l+vVk
  EHT98485.1  95 ARENGAGTMF-EPEPAYEGASQA-FPENQEETVMSVidgdrPDDASDDDNSPDDDPPPRGGRPALRVVK 161
                 **********.667677754433.333334444444779986677888888888999999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1224.28
//
Query:       EHT98486.1  [L=585]
Description: sulfite reductase [NADPH] flavoprotein alpha-component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-33  114.6   0.0    1.2e-31  110.0   0.0    2.2  1  FAD_binding_1  FAD binding domain
    3.6e-31  108.3   0.0    6.4e-31  107.5   0.0    1.4  1  Flavodoxin_1   Flavodoxin
    5.6e-19   68.8   0.0      3e-18   66.4   0.0    2.2  2  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0     2e-35   1.2e-31       4     222 .]     217     410 ..     214     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 2e-35
                    BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEHHH CS
  FAD_binding_1   4 dakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTlrq 99 
                    +++++++a++ +n++L + +s + + h+e+d+ dsglkYe Gd+lgv+p N+++lV  ll+ l++d        ++  d            ++l+ 
     EHT98486.1 217 NKSNPYAAALITNKRLSSEQSAKDIRHFEFDLTDSGLKYEAGDALGVIPVNEPSLVSLLLTQLNADY----QTPVPGFD------------RSLGD 296
                    5789*********************************************************999998....34567777............79*** PP

                    HHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTTTT CS
  FAD_binding_1 100 alkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvhpd 195
                    +l+y  +i  p s++    L+e+  ++++ q+L  + ++  ++++  + + +    l++l+      l++ ++++ l  L+ R YSiSsssk+hp+
     EHT98486.1 297 LLTYQFEISEP-SRK----LIEWVGQNTTNQELRHVLQHDDKDALGVWLWGKDT--LDLLQLELTRSLSVPEFVALLRPLQHRAYSISSSSKAHPN 385
                    ********765.554....56677777778888888888889999999998764..5777777777788889************************ PP

                    EEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 196 evhltvvVveyetdgegrirkGvcsny 222
                    +vhlt++ v y+    gr r+Gvcs+y
     EHT98486.1 386 QVHLTIAAVRYHS--GGRNRSGVCSTY 410
                    ************6..9*********98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   1.1e-34   6.4e-31       1     139 [.      54     181 ..      54     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 1.1e-34
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   ilYgS+tGn+e+lA++ a+ ++++g+ + v  l d+d  l+ + + + +l+vtsT+g+G++p+n++  f+d +       +++ l+++ fav++ Gd
    EHT98486.1  54 ILYGSQTGNAEALAQSAAKSARAKGLVPVVQALGDVD--LDVFATMRHVLIVTSTYGEGEMPDNAQ-LFWDAISAS----TAPRLEQMHFAVLAIGD 143
                   89***********************************..789999999*****************9.*******99....79*************** PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHH CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegdednqegqeea 139
                   ++y +Fc+agk+ld +le+lGa+r++    +d d    +ee 
    EHT98486.1 144 TGYDGFCQAGKFLDMRLEQLGAKRVVDRIDCDID----YEEP 181
                   **************************96666654....4555 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.59   3.6e+03      24      44 ..      48      69 ..      33      81 .. 0.70
   2 !   66.4   0.0     5e-22     3e-18       1     108 [.     443     549 ..     443     550 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.59
                   TCSEEEEEEEESSGC.GSTTHH CS
  NAD_binding_1 24 dktkvvlvyGnrtee.dllyre 44
                    +t+++++yG +t + + l + 
     EHT98486.1 48 ATTQLHILYGSQTGNaEALAQS 69
                   6899999999999874454444 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 5e-22
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...HSSTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...lkkee 92 
                    m+++GtGiaP+r++l++++     ++k +l++G +++e d++yreel ++ ++   +   +a+ sr++++    k++vq+++le+ ++     +e+
     EHT98486.1 443 MVGPGTGIAPFRAFLQERQVT-GAQGKNWLFFGDQHQEhDFIYREELTAWHESGLLTRLDLAF-SRDQDK----KVYVQNRMLEQGAElyaWLQEG 532
                    9*******************8.999********999888***********5544443333333.665555....7*************999779** PP

                    EEEEEEC.SHHHHHHHH CS
  NAD_binding_1  93 thvyvCG.ppgMikavr 108
                      +yvCG + +M+k+v+
     EHT98486.1 533 GYFYVCGdASRMAKDVD 549
                    **************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 4799.37
//
Query:       EHT98487.1  [L=1843]
Description: glutamate synthase large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     8e-107  357.6  12.2   2.4e-101  339.5   6.4    2.9  3  Glu_synthase     Conserved region in glutamate synthase
    9.1e-87  291.5   0.0    1.5e-86  290.8   0.0    1.3  1  GATase_2         Glutamine amidotransferases class-II
    1.8e-75  254.0   0.1    4.1e-74  249.6   0.0    2.2  2  Glu_syn_central  Glutamate synthase central domain
    1.9e-52  177.7   5.8    4.4e-52  176.4   5.8    1.6  1  GXGXG            GXGXG motif


Domain annotation for each model (and alignments):
>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.28   1.3e+03     130     151 ..     522     543 ..     497     549 .. 0.81
   2 !   20.1   0.2   6.4e-08   0.00029     246     301 ..     627     683 ..     594     692 .. 0.88
   3 !  339.5   6.4  5.4e-105  2.4e-101      39     367 ..     994    1315 ..     967    1316 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.28
                   HHHHH-SEEEEE---TTSTTS- CS
  Glu_synthase 130 eyLnnakaleikiaQGakpgeG 151
                   + +++a+ + +++a Gakp  G
    EHT98487.1 522 DSIREADGMTLRVALGAKPHLG 543
                   57889999***********877 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 6.4e-08
                   HHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEE.ESS--SHHHHHHHHHHT-SEEE CS
  Glu_synthase 246 ssikhaGlPlelalaevdqtlkeeglrdrvslia.dGglktgadvvkalalGAdavg 301
                    s  ha lP++l +++v+q+l++eglr  vsl + +G++ +++ ++ +l +GA av+
    EHT98487.1 627 ISSTHAALPMLLVVSAVNQRLVQEGLRLDVSLVVeSGQIISSHHIAATLGFGASAVY 683
                   56789**************************99847******************998 PP

  == domain 3  score: 339.5 bits;  conditional E-value: 5.4e-105
                    GGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT-B-EETTS---GGGGS-----SEEEE-TT-TT--HHHHH CS
  Glu_synthase   39 krdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgtksntGEGGedeerlktakdvaikQvasgrFGvteeyLn 133 
                      d l   ++  ++ +l+e++pa +i++ ++ +amS Gal   ahea+a + n++g++sn+GEGGe+  r  t +  +ikQ+asgrFGv + yL 
    EHT98487.1  994 AADYLSRIFTALPSLPLSEIQPACEITRTFASGAMSHGALVAPAHEAVAHGTNMVGGMSNCGEGGEHYSRHGTIRASRIKQLASGRFGVWAAYLA 1088
                    555565556666778999****************************************************************************9 PP

                    H..-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHT CS
  Glu_synthase  134 n..akaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysiedlaqliedLkevnkeakvsvKlvaeagvetiaagvaka 226 
                    +   ++leiki+QGakpgeGgqlp++Kv+ eia+ R+ +pgv+l+SP+phhd ysiedlaqli+d k +   ++v vKlv+ +g++tia+gvaka
    EHT98487.1 1089 DpmLEELEIKIGQGAKPGEGGQLPAAKVTVEIAAARGGTPGVELVSPPPHHDTYSIEDLAQLIHDCKAAR--VRVIVKLVSSEGIGTIAVGVAKA 1181
                    74469**************************************************************987..9********************** PP

                    T-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT CS
  Glu_synthase  227 nadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialgCimarvChtn 321 
                    +ad+i + G+ GGTGA+  +s k++G   e+++aev+q+l+++glrd+v l+ +G  +tg dvvk+++lG d++++gt+al+ l C+ma+ C   
    EHT98487.1 1182 GADVINVAGNTGGTGAASVTSLKYTGRVAEIGIAEVHQALCANGLRDKVLLRCSGAQQTGSDVVKSALLGGDSFEFGTTALMMLKCVMAKNCNV- 1275
                    ********************************************************************************************87. PP

                    --TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase  322 tCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgi 367 
                    +Cp+G++t+ +        +++++++++y+  +a+evre+la++g 
    EHT98487.1 1276 KCPAGLTTNAEAF------DGDPRQLAQYFLNVAHEVREILARMGL 1315
                    8*******98765......5************************97 PP

>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.8   0.0   3.2e-90   1.5e-86       1     418 [.      21     424 ..      21     426 .. 0.92

  Alignments for each domain:
  == domain 1  score: 290.8 bits;  conditional E-value: 3.2e-90
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHHTT-----GGG-EEEEEEE-SSHHHHHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeakekgielpeageyavgmlflpkdeekaeeakkileeivee 99 
                 CGvgfi+  +g+++h+i++ a +al+++ HRG+++a+   GDGaG+ +++  +f+rk++   g  l eag+++vg++f+pkd+e +++a++ +ee++++
  EHT98487.1  21 CGVGFITRKDGEQTHDILRMAHSALCTVPHRGGMSAEG-VGDGAGVNVDLSLHFFRKIT---GQAL-EAGRFGVGNFFVPKDAELRANAERLVEETLRH 114
                 ************************************86.7*****************99...5555.67****************************** PP

                 TT-EEEEEEE--B-GGGS-HHHHH.H--EEEEEEEE-TT---HHHHHHHHHHHHHHHGGG.....-BTTBEEEEEESSEEEEEESS-GGGHHHHBHGGG CS
    GATase_2 100 eglevlgwRevpvdksvlgeaake.sePsieqvfvekkedlseeelerklyviRkriekeiakkkaekefYicslssrtivYkglltseqlkefykdlk 197
                  +l v+  Re+p+d+sv   aa + + P ++ +f + +  ++++++e+++y +   ie e+ +k++   +Y  slssrt v+k+ l+s+++  ++kdl+
  EHT98487.1 115 FNLPVIMKREMPLDNSVTRPAAVQfQLPIVQWIFAAPQDVSHQNDFEKRIYRALLAIEAEAFTKSEFGGLYPLSLSSRTQVFKARLNSNEVIPYFKDLT 213
                 *******************999772556666666666666999*******************999********************************** PP

                 STT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHHHHHHHH.HHHHTT--HHHH CS
    GATase_2 198 deelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsasldnvle.llvlsgrslaea 295
                 d++ +     +H+Rfstnt P+ ++aqP+Rl+aHnGE+nt r n+      e+ l+s   +   +    +  +++sDs++ld+ +   l+    +l  a
  EHT98487.1 214 DPDHQVRGLFFHTRFSTNTDPHTTMAQPFRLMAHNGELNTDRKNRI----AESALASARGK---TI---VRPKGQSDSSRLDQSIHsRLMEDDLDLITA 302
                 ****************************************887764....44555555433...22...334789*******99872588888****** PP

                 HHHHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGEEEEEE--TT-EEEE CS
    GATase_2 296 lmlliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeevvekgrlqPGrmllv 394
                 ++ ++P+awen+++l++  +++ ey s+  e  DGPa+++f +G+v+ga LDR GLRP R + t  +++   sE+G + +++e+v+++gr++ G ml  
  EHT98487.1 303 VVSMMPPAWENDTALSPVVRDMLEYFSLYEEKNDGPAALIFGNGEVIGARLDRLGLRPLRSVETA-EYIGAMSEAGQIAFPPESVLRRGRIEAGGMLYF 400
                 ************************************************************98886.578888*************************** PP

                 ETTTTEEEEHHHHHHHHHTTS-HH CS
    GATase_2 395 dleegriledeeikkkiaskkpyk 418
                 d +e+r ++ +e  +k+a++k+y 
  EHT98487.1 401 DHREKRSYTTHEALEKLAAEKDYA 424
                 **********************96 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.0   9.1e-78   4.1e-74       3     275 ..     461     739 ..     459     742 .. 0.93
   2 ?    1.8   0.0      0.03   1.3e+02     175     265 ..    1214    1319 ..    1209    1325 .. 0.61

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 9.1e-78
                      HHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EEE CS
  Glu_syn_central   3 qkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrlk 96 
                        a+ y++e+++++++pm+++g+e+i++mG+ ++++ Ls+++  +++YF+q+fAqVTNPp+D+iRE+  m+l+++lG++++l ++   + +++ 
       EHT98487.1 461 FVAYYYNQESFKFMMDPMLNTGAEKISAMGYGNAINGLSDHEGGMAHYFSQRFAQVTNPPLDSIREADGMTLRVALGAKPHLGRS---KGRQII 551
                      57899****************************************************************************9754...68**** PP

                      ESSSB--HHHHHHH....HHSSS-EEEEESEE................SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHH CS
  Glu_syn_central  97 lesPiLteeeleklkklkekkefkaktlditfeae.............aleealerlceeaeeavregaeilvLsDrkvseervpipslLavga 177
                      + +PiLt+ ++ +l   +e++    +++d+++e               ale+a+++l++++ + +r++  i vL+Dr++s++++++p+lL+v+a
       EHT98487.1 552 VPTPILTHLDMLQL---REQNVAPYARFDMLYEPVtgkdllsrtanatALEKAIDDLAQQVVDFARSQGGIAVLTDRHISSTHAALPMLLVVSA 642
                      **************...5566889********64356666666655546********************************************* PP

                      HHHHHHHTT-GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHS- CS
  Glu_syn_central 178 vhhhLvrkglrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegalaeeeleknyrkavekGllKimskmGistlqSYkgaq 271
                      v+++Lv++glr +vslvvesg++ + hh+a+ lg+Ga+av+P  +   +e+   eg+   +++ k+y ka+ek+l+K+m k+G++t++SY++++
       EHT98487.1 643 VNQRLVQEGLRLDVSLVVESGQIISSHHIAATLGFGASAVYPLGVQMRAEEKFGEGEE-GNKAFKRYAKAAEKALMKTMGKVGLCTVESYSSGE 735
                      *************************************************999988877.66677****************************** PP

                      -EEE CS
  Glu_syn_central 272 ifea 275
                      +fe 
       EHT98487.1 736 FFEP 739
                      **95 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.03
                       HHHHHHHHHHTT-GGG-EEEEEESS--..SHHHHHHHHH....TT-SEEEEHHHHHHHHHHHTTTS-............----HH......H CS
  Glu_syn_central  175 vgavhhhLvrkglrtkvslvvesgear..evhhfavllg....yGadavnPylaletieklveegal............aeeele......k 242 
                       ++ vh++L+++glr kv l +  ++    +v + a+l g    +G +a+   ++l+++  ++++ ++                 +      +
       EHT98487.1 1214 IAEVHQALCANGLRDKVLLRCSGAQQTgsDVVKSALLGGdsfeFGTTAL---MMLKCV--MAKNCNVkcpaglttnaeaF----DgdprqlA 1296
                       789**************99888777642266677777663333444443...344444..22221112233344333230....13344468 PP

                       HHHHHHHHHHHHHHHHTT--BHH CS
  Glu_syn_central  243 nyrkavekGllKimskmGistlq 265 
                       +y   v + +  i+++mG+  l+
       EHT98487.1 1297 QYFLNVAHEVREILARMGLRSLR 1319
                       89999999999999999987765 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   5.8   9.8e-56   4.4e-52      16     187 ..    1427    1598 ..    1407    1601 .. 0.93

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 9.8e-56
                  HHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--TT-SS-GGGSB-S-SSTTTT--SEEEEESSB--S CS
       GXGXG   16 neiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpskeskfkaeeniivGnvvlygatgGklfirgkage 112 
                  ++++   g++ l+  t++i+ +GsaGqs+gaf+ +G+ ++  G +nd vGkg  gG++v+  +   + +++ n+++Gn +l+gatgG+lf++g+ag+
  EHT98487.1 1427 SVLQDDRGRRYLAPATVHITTTGSAGQSFGAFCNDGMLMQHRGTCNDGVGKGQCGGELVVLSPGGGAQDSDGNVLIGNFALFGATGGRLFVQGQAGD 1523
                  56667778888999*********************************************************************************** PP

                  STTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSSTHHHHB-TTT-EEEES-SHH CS
       GXGXG  113 RfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedekfekklnkelvelekvedee 187 
                  Rfavrnsgatavvegvgd++ceYmt G v  Lg+ g+ f+ GmsgG+ay +d  ++++++   + v + ++ d++
  EHT98487.1 1524 RFAVRNSGATAVVEGVGDFCCEYMTNGAVLNLGTFGKGFGNGMSGGFAYQYDPYGSLANHAAGDSVLFGSIADAD 1598
                  ********************************************************9999999998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 12443.96
//
Query:       EHT98488.1  [L=778]
Description: hybrid sensory histidine kinase in two-component regulatory system with ArcA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-29  101.2   6.6      5e-29  100.9   5.5    1.8  2  HKR_ArcB_TM   Histidine kinase receptor ArcB trans-membrane d
    5.2e-29  101.0   0.1      1e-28  100.1   0.1    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    2.8e-22   79.0   0.4    8.7e-22   77.4   0.4    1.9  1  Response_reg  Response regulator receiver domain
    2.7e-16   59.6   0.0    6.2e-16   58.4   0.0    1.7  1  PAS           PAS fold
    9.1e-15   54.9   0.3    4.8e-14   52.5   0.0    2.3  2  PAS_4         PAS fold
    4.6e-14   52.2   2.7    1.5e-13   50.6   0.1    2.7  2  HisKA         His Kinase A (phospho-acceptor) domain
    5.3e-12   45.8   5.4    8.5e-12   45.2   0.0    3.0  3  Hpt           Hpt domain
    7.4e-06   26.2   0.0    2.2e-05   24.7   0.0    1.9  1  PAS_9         PAS domain
    0.00086   19.3   0.1     0.0076   16.3   0.0    2.7  3  PAS_8         PAS domain
     0.0017   18.2   0.0     0.0033   17.3   0.0    1.5  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
  ------ inclusion threshold ------
      0.014   14.7   0.2      0.029   13.7   0.2    1.5  1  CCB1          Cofactor assembly of complex C subunit B
      0.091   13.4   7.2       0.33   11.6   5.3    2.6  2  ING           Inhibitor of growth proteins N-terminal histone
       0.12   12.3   0.0       0.29   11.1   0.0    1.6  1  HATPase_c_2   Histidine kinase-like ATPase domain
       0.24   10.4   3.8       0.41    9.7   3.8    1.3  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
       0.25   11.7   5.2       0.69   10.3   5.2    1.7  1  DUF1840       Domain of unknown function (DUF1840)
       0.38   10.9   5.7          1    9.5   5.7    1.6  1  Fib_alpha     Fibrinogen alpha/beta chain family
       0.69    8.7   9.8        1.4    7.7   9.8    1.4  1  Spc7          Spc7 kinetochore protein
        3.4    7.7   5.9        7.9    6.5   5.9    1.6  1  DUF1664       Protein of unknown function (DUF1664)
          9    6.5  11.4         70    3.6   0.5    2.6  2  CREPT         Cell-cycle alteration and expression-elevated p


Domain annotation for each model (and alignments):
>> HKR_ArcB_TM  Histidine kinase receptor ArcB trans-membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   5.5   5.3e-32     5e-29       1      74 [.      15      88 ..      15      89 .. 0.98
   2 ?   -1.7   0.0       5.8   5.5e+03      60      72 ..      88     100 ..      87     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 5.3e-32
  HKR_ArcB_TM  1 vlrLGtvrfSlllvlllivlalliqillslllsgeveiedllrsilfgllsaPwvlYFlsvlveqLEeSRqrLs 74
                 +++LG +rfSlll+++l+vla+++q++++++l+g+ve  d++rs++fgll++Pw++YFlsv+v+qLEeSRqrL+
   EHT98488.1 15 MVKLGLIRFSLLLASALVVLAMIVQMAVTMVLRGHVESIDMVRSVFFGLLITPWAVYFLSVVVDQLEESRQRLA 88
                 68***********************************************************************7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.8
  HKR_ArcB_TM  60 svlveqLEeSRqr 72 
                   +lv++LEe R+r
   EHT98488.1  88 ARLVDKLEEMRTR 100
                  689******9975 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.1   1.1e-31     1e-28       2     110 ..     395     505 ..     394     507 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.1e-31
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH..HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsq..ddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 d +rLrqi++nl++Navkf t++gei v+i  ++ ++l+++v+D+G+Gi +e+++k+f+ ++q  d++      gtG+Gl+++++l++ mgG+i+v+s 
  EHT98488.1 395 DGTRLRQILWNLIGNAVKF-TQQGEIIVRIAYEQdETLRFEVQDSGQGIREEEQDKIFAMYYQvtDQHGGKPATGTGIGLAVSRRLAQAMGGDISVSSA 492
                 889****************.99****9999984457***************************97666666689************************* PP

                 TTTEEEEEEEEES CS
   HATPase_c  98 pgrGttftftlpl 110
                 pg+G++ft+ ++ 
  EHT98488.1 493 PGQGSCFTVVIKA 505
                 ********99875 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.4   9.3e-25   8.7e-22       1     111 [.     528     639 ..     528     640 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 9.3e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTT...SEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpe...lpviiltahseeedavealkaga 94 
                   vl+v+D +l++ + r++le+ g+ +v++a +g++ale+++  ++dl++lDi++p+m+G+++ + ir++ p+   +p ++lta+   +d++e+++ag+
    EHT98488.1 528 VLLVEDIELNVIVARSVLEKLGC-SVDVAMTGQAALEMFDPLEFDLVMLDIQLPDMTGMDVSRAIRQRYPDahlPPLVALTANV-LKDKKEYFDAGM 622
                   89*********************.********************************************9655559999999887.799********* PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   dd+lsKp++  +L++++
    EHT98488.1 623 DDVLSKPLAVPALTAII 639
                   ***********999987 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   6.6e-19   6.2e-16       2     113 .]     156     266 ..     155     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 6.6e-19
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC......TTSSEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl......rdgrpihlevras 94 
                 +lr++l+++pd +f ++ d  ++++N+a+e l+G s+++++g +  d +       +++  +++le+ e+    ++s+++      +dgr+ ++e+r +
  EHT98488.1 156 FLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGKSEKQLIGLTPHDIY-------DNDTATKVLETDEKVFRHNVSLTYeqwlqyPDGRKACFEIRKV 247
                 6899******************************************999.......8999999999999999999999999999*************** PP

                 EEEETTEEEEEEEEEEEES CS
         PAS  95 pvrdaggeilgflgvlrdi 113
                 p++d+ g++ g++g++rdi
  EHT98488.1 248 PYYDRVGKRSGLMGFGRDI 266
                 ******************8 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.5       2.8   2.7e+03      20      68 ..     104     148 ..     100     154 .. 0.67
   2 !   52.5   0.0   5.1e-17   4.8e-14       1     110 []     161     271 ..     161     271 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.8
       PAS_4  20 aNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepief 68 
                 +N+++ e + +  +e+ +++ ae    ++++++++ lr+ ++ +e ++ 
  EHT98488.1 104 LNQQMKETISRLNQEIADRKKAE----QAREQVMAKLREEVARREQAQI 148
                 67777777777888888888886....4667777777765555555554 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 5.1e-17
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.pgeerhyelrllPlrdesGevigv 98 
                 ld++pd++++ + d ++  +N+a++ l g + ++l+G t+++++  + a+ + + +++v + + +++ ++ l   +g+   +e+r++P  d+ G+  g+
  EHT98488.1 161 LDASPDLVFYRNIDKQFSGCNRAMELLTGKSEKQLIGLTPHDIYDNDTATKVLETDEKVFRHNVSLTYEQWLQYpDGRKACFEIRKVPYYDRVGKRSGL 259
                 79*******************************************************************99999************************* PP

       PAS_4  99 lvisrDiTerrr 110
                 ++++rDiTer+r
  EHT98488.1 260 MGFGRDITERKR 271
                 **********97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4      0.56   5.3e+02      41      61 ..      77      97 ..      72     127 .. 0.80
   2 !   50.6   0.1   1.6e-16   1.5e-13       2      65 ..     283     345 ..     282     347 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.56
                HHHHHHHHHHHHHHHHHHHHH CS
       HisKA 41 letiesearrldhlvedlLdl 61
                ++++e++ +rl +lv+ l ++
  EHT98488.1 77 VDQLEESRQRLARLVDKLEEM 97
                677777888888888888554 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 1.6e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 ++ f+++++HELrtPL++i g + +L ++ +l++e+ +yl+ti+ +a  l ++ +d+ +  +ie
  EHT98488.1 283 KTTFISTISHELRTPLNGIVGLSRILLDT-DLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIE 345
                 789***********************996.99***************************99998 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.7       0.4   3.8e+02       7      33 ..      80     112 ..      74     117 .. 0.77
   2 ?   -0.9   0.1       2.1     2e+03      49      83 ..     113     144 ..     107     146 .. 0.67
   3 !   45.2   0.0     9e-15   8.5e-12       3      80 ..     687     759 ..     685     772 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHH......SCCHHHHHHHHH CS
         Hpt   7 leeaeelleqleqal......dqedlqelaraa 33 
                 lee++++l++l ++l      d e++q+++++ 
  EHT98488.1  80 LEESRQRLARLVDKLeemrtrDLELNQQMKETI 112
                 789999999999999888877777888877665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHHHH CS
         Hpt  49 aelahelEdlldragelelepellealkallealr 83 
                 ++l +e+ d   r++ ++++++ ++ l++++++ +
  EHT98488.1 113 SRLNQEIAD---RKKAEQAREQVMAKLREEVARRE 144
                 444455555...88888888888888888887755 PP

  == domain 3  score: 45.2 bits;  conditional E-value: 9e-15
                 HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHH CS
         Hpt   3 lelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepellealkalle 80 
                 l++f + ++ +l+ l+++l ++d + +a++ H++KG+ag++Gl++l+++a+++++      el+++++++ ++ ++l 
  EHT98488.1 687 LTIFEQMMPGYLDVLDSNLMARDEKGIAEEGHKIKGAAGSVGLQHLQQIAKQIQS-----PELPAWWDNVGEWVEELK 759
                 899****************************************************.....**********95555443 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.3e-08   2.2e-05      15     104 .]     179     268 ..     165     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.3e-08
       PAS_9  15 yaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.....kerevevvlirkngetfwvlltaspvkdddgelvgiivilrDite 104
                  +N+a++ l+G s+++++g   +d++     +n++  ++le+ +k        ++e  l++++g++  ++++ +p +d  g+  g+ ++ rDite
  EHT98488.1 179 GCNRAMELLTGKSEKQLIGLTPHDIY-----DNDTATKVLETDEKvfrhnVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGLMGFGRDITE 268
                 69************************.....555555555555555556879***************************9999999********8 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     8e-06    0.0076       2      55 ..     156     206 ..     155     222 .. 0.79
   2 ?   -2.1   0.0       4.6   4.3e+03      28      37 ..     559     567 ..     559     596 .. 0.66
   3 ?   -2.5   0.0       6.2   5.9e+03      29      57 ..     673     698 ..     672     704 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8e-06
       PAS_8   2 rlralfesspdgiavvdlgdrivdvNqaalellGysadlkgellgqllpvlrpl 55 
                 +lr+++++spd ++  + ++++  +N+a++ l+G +  +  +l+g  +++++++
  EHT98488.1 156 FLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTG-K--SEKQLIGLTPHDIYDN 206
                 89************7555578*************.5..6666666666666655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.6
       PAS_8  28 qaalellGys 37 
                 qaale++  +
  EHT98488.1 559 QAALEMFD-P 567
                 79999996.3 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.2
       PAS_8  29 aalellGysadlkgellgqllpvlrplle 57 
                 ++lel G  ++l+++ l +++++ +p+  
  EHT98488.1 673 QYLELVG--PGLITQSL-TIFEQMMPGYL 698
                 7899999..88999999.88888877665 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-06    0.0033       7      83 ..     403     477 ..     397     519 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.5e-06
  HATPase_c_3   7 laelvdNsld.AdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAsls 83 
                  l  l+ N++   +  ++ + +  ++ +t ++ ++D G+G+ eee ++ + +  + ++++ +++ +G  GiGl  A+ +
   EHT98488.1 403 LWNLIGNAVKfTQQGEIIVRIAYEQDETLRFEVQDSGQGIREEEQDKIFAMYYQVTDQHGGKPATG-TGIGL--AVSR 477
                  6778888888555666666666666679**********************9999999665666666.68994..4333 PP

>> CCB1  Cofactor assembly of complex C subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   3.1e-05     0.029      72     141 ..      19      94 ..      13     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.1e-05
        CCB1  72 GlvapslflAifLtllaalgllclaLVlsilvpelgn..lflllvllsPlAgvfYwkkakrkeqvslkles....e 141
                 Gl++ sl lA  L++la++  +++++Vl+  v++++    +++ +l++P+A +f     ++ e+ + +l +     
  EHT98488.1  19 GLIRFSLLLASALVVLAMIVQMAVTMVLRGHVESIDMvrSVFFGLLITPWAVYFLSVVVDQLEESRQRLARlvdkL 94 
                 89999****************************88753367788899****9999888888888877777655442 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.3   0.00035      0.33      16      71 ..      90     145 ..      76     150 .. 0.89
   2 ?   -0.1   0.0       1.5   1.4e+03      59      85 ..     331     357 ..     271     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS..S-HHHHHHHHHHHHHHHHHHHH CS
         ING  16 lqrnltelreiDakvqellkeidskiekflkngslqknekeeelsriqeelkeaqe 71 
                 l ++l+e+r  D ++++++ke  s++++ +++++++++ +e+++++++ee+ + ++
  EHT98488.1  90 LVDKLEEMRTRDLELNQQMKETISRLNQEIADRKKAEQAREQVMAKLREEVARREQ 145
                 67899*************************9999***************9887665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  59 lsriqeelkeaqelldeKiqlaqqald 85 
                 l +i ++++e+ ++ + K+ql +q ld
  EHT98488.1 331 LGNIFNDVIEVDKIERRKVQLDNQPLD 357
                 457888999999999999999998776 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00031      0.29      46     111 ..     409     482 ..     402     503 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
  HATPase_c_2  46 hayleapegpvevrles.deealtvevaDsGpgfdpetlpdpteeep.......keslkegGrGlalikglvDe 111
                   a +  ++g++ vr+ + ++e+l++ev+DsG+g + e++++  +  +         ++   G+Gla+ ++l+  
   EHT98488.1 409 NAVKFTQQGEIIVRIAYeQDETLRFEVQDSGQGIREEEQDKIFAMYYqvtdqhgGKPATGTGIGLAVSRRLAQA 482
                  4555556788888855505667***********88887666555444889888888889999999999999876 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.8   0.00043      0.41      34     109 ..      80     155 ..      70     184 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00043
       Atg14  34 lksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsd 109
                 l + ++ l + ++k++e +++  +l+++ k +  +l++  +++ + ++  +++++kl++  ++ e+++ +l+++s+
  EHT98488.1  80 LEESRQRLARLVDKLEEMRTRDLELNQQMKETISRLNQEIADRKKAEQAREQVMAKLREEVARREQAQIELEQQSS 155
                 3333444444444444444444444445555555555555555555555555555555555555555555555544 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.2   0.00073      0.69      38      97 ..     104     162 ..      77     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00073
     DUF1840  38 taedlpaaiakLeaaiaaekaeeaeeeeeeeeeekeeekeeeeeevsLaqRalPLlelLk 97 
                   +++++ i++L+++ia+ k++e+++e+  ++  +ee +++e+++++L+q    L  +L+
  EHT98488.1 104 LNQQMKETISRLNQEIADRKKAEQAREQVMAK-LREEVARREQAQIELEQQSSFLRSFLD 162
                 679****************9999888887755.56789999999****998776666665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.7    0.0011         1      29     112 ..      79     162 ..      74     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
                 CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH CS
   Fib_alpha  29 yekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvle 112
                 + ++ +++l++l ++lee++ +  e ++ +ke+ + l+++ +  k+ +++ +++  +l+ee++r ++  ++ e++  +L++ l+
  EHT98488.1  79 QLEESRQRLARLVDKLEEMRTRDLELNQQMKETISRLNQEIADRKKAEQAREQVMAKLREEVARREQAQIELEQQSSFLRSFLD 162
                 567788999999999999999999999999999999999999999999999999999999999999999999999999998876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.8    0.0015       1.4     169     249 ..      77     153 ..      72     166 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
        Spc7 169 lpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee 249
                 +++lee +++l + ++kl+e    + + d e  ++++e++++l++ei+ +kk  + +++ +++l+e+++  ++   ele++
  EHT98488.1  77 VDQLEESRQRLARLVDKLEE----MRTRDLELNQQMKETISRLNQEIADRKKAEQAREQVMAKLREEVARREQAQIELEQQ 153
                 44444444444444444444....334455555567777777777777666666666666666666666665555555544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.9    0.0084       7.9      51     124 .]      74     147 ..      71     147 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0084
     DUF1664  51 eqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieekQ 124
                   v ++l++ +++L++ +d++++      e+ +++ke ++++++++++ ++  ++ ++++ +l ++++r e+ Q
  EHT98488.1  74 SVVVDQLEESRQRLARLVDKLEEMRTRDLELNQQMKETISRLNQEIADRKKAEQAREQVMAKLREEVARREQAQ 147
                 5678999999999999999999999999***********************9999999999**99999988776 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.5     0.074        70      84     121 ..      72     109 ..      69     111 .. 0.89
   2 ?    2.5  10.6      0.16   1.5e+02      58     105 ..     106     153 ..      83     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.074
       CREPT  84 fleaqkellakaeekleelkeklekvksvrkelkshiq 121
                 fl+++ ++l++++++l++l +kle++++   el+++++
  EHT98488.1  72 FLSVVVDQLEESRQRLARLVDKLEEMRTRDLELNQQMK 109
                 5667778999************************9987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
       CREPT  58 ellaeYnkrLeaeleeRkklakmledfleaqkellakaeekleelkek 105
                 ++++e  +rL++e+ +Rkk ++  e+ ++ ++e++a+ e+   el+++
  EHT98488.1 106 QQMKETISRLNQEIADRKKAEQAREQVMAKLREEVARREQAQIELEQQ 153
                 67788899******************************9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1951  (0.108818); expected 358.6 (0.02)
Passed bias filter:                     1064  (0.0593452); expected 358.6 (0.02)
Passed Vit filter:                       174  (0.00970495); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.95u 0.27s 00:00:01.22 Elapsed: 00:00:00.45
# Mc/sec: 5205.44
//
Query:       EHT98489.1  [L=239]
Description: biosynthetic peptidoglycan transglycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-46  157.5   0.0    2.9e-46  157.2   0.0    1.1  1  Transgly  Transglycosylase


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   0.0   1.6e-50   2.9e-46      11     177 ..      61     224 ..      52     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 1.6e-50
    Transgly  11 eenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeILe 109
                  +++++v ++ ++p ++ av+a+ED++F +h+G+d+ +i++ + ++    ++ +G+ST++qQ++knlfl + r++ rK  ea l++ le+ ++K++IL+
  EHT98489.1  61 VSHSDWVGTQAMSPWIRLAVIASEDQNFPHHWGFDVAAIQSVLDSD---DNRMRGASTLSQQTAKNLFLWDGRSWMRKGLEAGLTVGLETVWTKRRILT 156
                 56789*********************************99888777...47789****************9**************************** PP

    Transgly 110 aYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                  YlN +++g++++G+eaA+r++F+k+a++L+++eaalLa++l++P r++    + ++++r++++l++m
  EHT98489.1 157 VYLNIAEFGKGTFGVEAASRRFFNKPASRLSMSEAALLAAVLPNPLRFRADAPSGYVRQRQQWILRQM 224
                 ************************************************8888899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1837.01
//
Query:       EHT98490.1  [L=90]
Description: phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-22   78.4   0.7    4.1e-22   78.2   0.7    1.0  1  PTS-HPr   PTS HPr component phosphorylation site


Domain annotation for each model (and alignments):
>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.7   2.3e-26   4.1e-22       2      81 ..       4      84 ..       3      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2.3e-26
                EEEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE.....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHHC CS
     PTS-HPr  2 ekkvtiknekGlhaRpAamlvqaasefksevtlekkd.kpvnaksilglmsLgvkkGeevtvsaeGedeeealealaelle 81
                +++v+i+n++G+haRpA +l ++++ f++ev l+++  ++++a s+++l++L+ +kG  ++++a+G++e++al+a+ el+e
  EHT98490.1  4 KQTVEIRNKLGMHARPAMKLFELVQSFDAEVLLRNEAgTEAEASSVIALLMLDSAKGGHIEIEASGPQETDALAAVIELFE 84
                799*******************************96679****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 736.94
//
Query:       EHT98491.1  [L=284]
Description: putative ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-144  479.9   0.0   2.7e-144  479.7   0.0    1.0  1  ATP_bind_2    P-loop ATPase protein family
  ------ inclusion threshold ------
       0.05   14.2   0.0       0.77   10.3   0.0    2.7  2  AAA_18        AAA domain
      0.057   12.8   0.2       0.13   11.6   0.2    1.5  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.058   12.7   0.0       0.33   10.2   0.0    1.9  2  DnaB_C        DnaB-like helicase C terminal domain
      0.062   13.1   0.0          2    8.2   0.0    2.2  2  CPT           Chloramphenicol phosphotransferase-like protein
      0.093   13.1   0.1       0.22   11.9   0.1    1.8  1  AAA_16        AAA ATPase domain
        0.1   12.7   0.0       0.36   11.0   0.0    1.9  1  AAA_33        AAA domain
       0.11   12.7   0.1       0.33   11.2   0.1    2.1  1  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.7   0.0  1.2e-147  2.7e-144       1     284 []       1     282 [.       1     282 [. 0.99

  Alignments for each domain:
  == domain 1  score: 479.7 bits;  conditional E-value: 1.2e-147
                 EEEEEEEESTTSSHHHHHHHHHHHTXEEEBSXXGGGHHHHHHHHH...TTTXXEEEEESTTTSXSSHHHHHHHHHTSXTTSEEEEEEEEXXHHHHHHHC CS
  ATP_bind_2   1 ielvivsGlsGaGksvalraledlGyyvvdnlPlsllpklvdllkeansreskvavvldvrnreesaelleqaeellekaitprilfleadddtlvrry 99 
                 + l+ivsG+sG+Gksvalraled+G+y+vdnlP++llp+l++ l    +r++++av++dvrn++es+e++e+a ++l++ ++p++lfl+ad++tl+rry
  EHT98491.1   1 MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPQLAESLV---ERNISAAVSIDVRNMPESPEIFETALNNLPSGFSPQLLFLDADRNTLIRRY 96 
                 789*****************************************9...9************************************************** PP

                 TSSSXSSTTSXXXSSHHH.HHHHHHHTHHHHHTXSEEEECTTXXHHHHHHHHHHHHHXXXSSS-EEEEEEEEGGG---TT-SEEEE-TTS--GGGSTTT CS
  ATP_bind_2 100 edtrrshPlsakdlsleg.iakerelleplraradlildtselsvrelreklrkalagnsekeltvvvesfGfkyGiPldadlvfdvrflPnPhwveel 197
                 +dtrr+hPls+k+lsle+ i++e++lleplr+radli+dtse+sv+el+e+lr++l g++e+elt+v+esfGfk+GiP+dad+vfdvrflPnPhw+++l
  EHT98491.1  97 SDTRRLHPLSSKNLSLESaIDEESDLLEPLRSRADLIIDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKL 195
                 ******************9******************************************************************************** PP

                 TTS-TTSHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEEEEESSSSSHHHHHHHHHHHHHHHTT-EEEEEETTTTTX CS
  ATP_bind_2 198 rPltGkdkevaeyvlkrtevaefieklrsllslvlpslkregksyltiaiGctGGkhrsvaiaeqladyfrsdgktvvarhrdlekr 284
                 rP+tG+d++va++++++tev++fi+++rs+l+l+lp+l+++++sylt+aiGctGGkhrsv+iaeqladyfrs+gk+v++rhr+lekr
  EHT98491.1 196 RPMTGLDRPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKR 282
                 *************************************************************************************97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00034      0.77       2      33 ..       5      33 ..       4     115 .. 0.76
   2 ?   -1.8   0.0         2   4.4e+03      69      91 ..     238     269 ..     195     274 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00034
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlrdvak 33
                +++G +G+GK+   ++L+++   g+ + d+++
  EHT98491.1  5 IVSGRSGSGKSVALRALEDM---GFYCVDNLP 33
                799**************999...555555544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
      AAA_18  69 s.........aleegknlvidghlaeleseaa 91 
                 +         + +++ +++i  +la+++  + 
  EHT98491.1 238 RsyltvaigcTGGKHRSVYIAEQLADYFRSRG 269
                 34444445555567777777777777776665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   5.9e-05      0.13      42      59 ..       4      21 ..       3      21 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
                  EEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntL 59
                  ++v G++gsGKS+al++L
    EHT98491.1  4 MIVSGRSGSGKSVALRAL 21
                  6899************98 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.33      21      91 ..       3      73 ..       2     112 .. 0.71
   2 ?    0.5   0.1      0.13     3e+02      86     133 ..     113     163 ..      82     164 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                EEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHT.TSXHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
      DnaB_C 21 liiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtg.klkeedwek 91
                l+i+ +r++ Gk++ al   e +      +  v+ l   ae+lv+R +s+  +id +++ ++ ++ e+ +++
  EHT98491.1  3 LMIVSGRSGSGKSV-ALRALEDMGFYCVDNLPVVLLPQLAESLVERNISAAVSIDVRNMPESpEIFETALNN 73
                89**********86.666666665544445666678999*****************9995543666644444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHHHHH...HHHHTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
      DnaB_C  86 eedweklteaieelseaklfiddtpaltvseirskarr...lkkekglgli 133
                 e+ +++ ++ +e l++   +i dt++++v+e+ + +r     k+e++l ++
  EHT98491.1 113 ESAIDEESDLLEPLRSRADLIIDTSEMSVHELAEMLRTrllGKRERELTMV 163
                 445555566667777766677788999999998887764433444666665 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.041        92       3      28 ..       3      28 ..       1      75 [. 0.76
   2 ?    8.2   0.0   0.00088         2     152     173 ..     131     152 ..     127     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.041
                EEEEEE-TTSSHHHHHHHHHHHSSS- CS
         CPT  3 iilLnGgsssGKsslaralqevldep 28
                +++  G s sGKs   ral ++   +
  EHT98491.1  3 LMIVSGRSGSGKSVALRALEDMGFYC 28
                56889*********99*999876555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00088
                 SEEEETTSS-HHHHHHHHHTT- CS
         CPT 152 DlevDtsaktpeecArairerl 173
                 Dl +Dts++ ++e+A+++r+rl
  EHT98491.1 131 DLIIDTSEMSVHELAEMLRTRL 152
                 999***************9875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.7e-05      0.22      26      69 ..       3      34 ..       2     168 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-05
      AAA_16 26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69
                l+++sG sG+GKs  +r+l +         +   c+++   +p 
  EHT98491.1  3 LMIVSGRSGSGKSVALRALED---------MGFYCVDN---LPV 34
                579*************99985.........66666666...443 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016      0.36       1      90 [.       3     149 ..       3     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt.........................................................lrrrlfgtdq 42 
                 l+++ G +GsGKs  ++ l     +++ + ++                                                         l+rr+  t +
  EHT98491.1   3 LMIVSGRSGSGKSVALRALEDMGFYCVDNLPVvllpqlaeslvernisaavsidvrnmpespeifetalnnlpsgfspqllfldadrntLIRRYSDTRR 101
                 67999************9964433555555556666666999999999999999999999999999999999999999999999999998999998888 PP

      AAA_33  43 qsktdytrvl.drlyqilnelarkalsagrnvildatnlsrrerarflk 90 
                  ++  +++++ +++++  ++l+ + l++++++i+d    s +e a++l+
  EHT98491.1 102 LHPLSSKNLSlESAIDEESDLL-EPLRSRADLIIDTSEMSVHELAEMLR 149
                 8888888744366666666888.57888999999999888888887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00015      0.33       8      27 ..       4      23 ..       2     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
      AAA_22  8 lvvtGesGtGKTtllrrlle 27
                ++v G sG+GK++ lr l +
  EHT98491.1  4 MIVSGRSGSGKSVALRALED 23
                799*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2134.47
//
Query:       EHT98492.1  [L=159]
Description: sugar-specific enzyme IIA component of PTS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-37  127.9   0.0    2.9e-37  127.8   0.0    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.0   1.6e-41   2.9e-37       2     143 ..      12     154 ..      11     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.6e-41
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklifll 99 
                 +l++++++  ++++sk++a+e++++ la+++++ p++ ++ea+l+re+++stgigng+AiPH++le+  ++ + +++ l++p++f+a d++pv+l+f+l
  EHT98492.1  12 VLSPDCTRSSVHCQSKKRALEIISE-LAAKQLNLPHQTLFEAILTRERMGSTGIGNGIAIPHGKLEEdTLRAVGVFISLEQPIAFDAVDNQPVDLLFAL 109
                 5789999999*************97.666669********************************998899***************************** PP

                 E-SSCHH..HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHCH CS
  PTS_EIIA_2 100 alpekdae.hlkilaqLaellkdeefvekLrkakseeeilellee 143
                 ++p ++++ hl++l+ +a+ l+d+ ++++Lr+a+s ee++++++e
  EHT98492.1 110 LVPADQCKtHLHTLSLVAKRLTDKTVCRRLRAAQSDEELYAIITE 154
                 ******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1233.22
//
Query:       EHT98493.1  [L=95]
Description: ribosome hibernation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-26   91.5   0.3    4.7e-26   91.4   0.3    1.0  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma


Domain annotation for each model (and alignments):
>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.3   2.6e-30   4.7e-26       2      86 .]       4      93 ..       3      93 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 2.6e-30
                     EEEECTS---HHHHHHHHHHHCCGGGG....-EEEEEEE.EE..EEEEEEEEECTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHTTX CS
  Ribosomal_S30AE  2 eitgrnievtdalkeyvekkleklekyf...ieadVtls.kk..kkvevtirlakgkviraeeesedlyaaidlavdklerqlrkykeklk 86
                     + tg+n+e+t+ l+e+v+ k++kle+yf    ++ V+l+ +k  + +++t+ +++g  ++a++e+ed+yaaid ++dkl rql kyk+klk
       EHT98493.1  4 NLTGQNVEITEPLREFVTAKFAKLEHYFdhiNQVYVVLNvEKvtQVADATL-HVNGGELHATSEAEDMYAAIDGLIDKLARQLTKYKDKLK 93
                     89*************************8888999999998556789*****.577******9***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 809.19
//
Query:       EHT98494.1  [L=478]
Description: RNA polymerase, sigma 54 (sigma N) factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-70  235.3   0.5    4.6e-70  234.5   0.5    1.4  1  Sigma54_DBD  Sigma-54, DNA binding domain
    7.9e-62  208.3   0.2    7.9e-62  208.3   0.2    1.7  2  Sigma54_CBD  Sigma-54 factor, core binding domain
    8.2e-15   54.4  20.2    1.9e-14   53.2  20.2    1.7  1  Sigma54_AID  Sigma-54 factor, Activator interacting domain (A


Domain annotation for each model (and alignments):
>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.5   7.7e-74   4.6e-70       2     160 .]     318     476 ..     317     476 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 7.7e-74
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXSSXXXXXXXHHHHHTTSSSXHHHHHHHHHHXEEEXSSXEEECSCCXXXCSSTSSBHH CS
  Sigma54_DBD   2 eylkeklqeakwliksleqRketllkvaeeiverQkdflekgeealrpltlrevaealelhesTvSRvvsnkyiktprGvfelkafFsssvsseegge 99 
                  ++++++lqea+wliksle+R+etllkv+++ive+Q++f+e+gee +rp++l ++a+a+++hesT+SRv+++ky+++prG+felk+fFss+v++e+gge
   EHT98494.1 318 QFIRSNLQEARWLIKSLESRNETLLKVSRCIVEQQQAFFEQGEEFMRPMVLADIAQAVDMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGE 415
                  7999********************************************************************************************** PP

                  THHHHCCTHHHHHHCTS-TTSS--CCHHHHHHHCTTS--HHHHHHHHHHHCT-STTCCCHS CS
  Sigma54_DBD 100 asaeaikalikklieaEdkkkplSDdkivellkekgieiaRRtvaKYRealnipssserrr 160
                  as++ai+al+kkli aE+++kplSD+k++++l+++gi +aRRtvaKYRe+l+ip+s++r++
   EHT98494.1 416 ASSTAIRALVKKLISAENPAKPLSDSKLTSMLSDQGIIVARRTVAKYRESLSIPPSNQRKQ 476
                  ***********************************************************95 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.0       1.7     1e+04      20      20 ..      23      23 ..       3      55 .. 0.55
   2 !  208.3   0.2   1.3e-65   7.9e-62       6     179 .]     115     304 ..     112     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.7
  Sigma54_CBD 20 l 20
                 +
   EHT98494.1 23 I 23
                 1 PP

  == domain 2  score: 208.3 bits;  conditional E-value: 1.3e-65
  Sigma54_CBD   6 aaaeeslqehLleQlallelseeereiaeylienLdedGYleesleeiaeel.....eeeeveavlkliqsldPaGvgArdlqEcLllQlk....... 91 
                   ++++slq++L++Q++l+++s+++r+ia+ +++++d+ GYl+ sle+i++++     e +eveavlk+iq++dP+GvgArdl++cLl+Ql+       
   EHT98494.1 115 GETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAIDDTGYLTVSLEDILDSIgddelEMDEVEAVLKRIQHFDPIGVGARDLRDCLLVQLSqyapetp 212
                  56889**************************************************999********************************55666778 PP

  Sigma54_CBD  92 ....aealieehlellakkdlkklakklglseeelqealelIkkLnPkPgrefsseeaeyivPDvivekeegelevelndealpkLrineeY 179
                      a+ ++++hl+lla++d++ l++ ++l+e+ l+ea+ lI++L+P+Pg+++++ e+ey++PDv+v+k + +++veln ++lp+L+in++Y
   EHT98494.1 213 tlseARLIVSHHLDLLANHDFRSLMRVTRLKEDVLKEAMLLIQSLDPRPGQSINTGEPEYVIPDVLVRKAATRWTVELNTDSLPRLKINQHY 304
                  8888999**********************************************99999********************************99 PP

>> Sigma54_AID  Sigma-54 factor, Activator interacting domain (AID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2  20.2   3.2e-18   1.9e-14       2      45 ..       5      48 ..       4      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.2e-18
  Sigma54_AID  2 lqlkqtQklkLtpqLqQaiklLqlstlELeeeieeeleeNPlLE 45
                 lql+++Q+l++tpqLqQai+lLqlstlEL++e++ +le+NPlLE
   EHT98494.1  5 LQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQLALESNPLLE 48
                 9******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3926.88
//
Query:       EHT98495.1  [L=241]
Description: ATP-binding component of an ABC superfamily lipopolysaccharide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-34  118.1   0.0    6.1e-34  117.5   0.0    1.3  1  ABC_tran      ABC transporter
    4.6e-08   32.8   0.0      1e-07   31.7   0.0    1.7  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
     0.0006   19.7   1.5       0.25   11.1   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0087   15.5   0.1        3.5    7.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.015   14.4   0.0      0.022   13.8   0.0    1.2  1  T2SSE         Type II/IV secretion system protein
      0.054   14.0   0.1       0.11   13.0   0.0    1.4  2  AAA_23        AAA domain
      0.057   13.7   0.2       0.85    9.9   0.2    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   2.4e-37   6.1e-34       2     137 .]      20     166 ..      19     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 2.4e-37
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..............esdeei 85 
                 ++vsl++k ge+v+++G+nGaGK+t + ++ g +  ++G+i +d++d++    + ++r+ ig+lpqe+++f++l+v++n              ++++++
  EHT98495.1  20 EDVSLQVKSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGRIVIDDEDISIlPLHARARRGIGYLPQEASIFRRLSVYDNlmavlqirddlteeQRQDRA 118
                 79************************************************7778899*********************************98888888* PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++++ + +l+d+      +sLSgG+++rv++aral+ +pk++llDEp+a
  EHT98495.1 119 NELMDEFHIAHLRDNMG----QSLSGGERRRVEIARALAANPKFILLDEPFA 166
                 ***********998887....*****************************85 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0     4e-11     1e-07       2      23 .]     215     236 ..     214     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4e-11
  BCA_ABC_TP_C   2 vIAeGtPaEvrndPrVieAYLG 23 
                   +IA+GtP Ev +d++V ++YLG
    EHT98495.1 215 LIAHGTPNEVLADEQVKRVYLG 236
                   6********************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   9.7e-05      0.25       2      19 ..      32      49 ..      31      92 .. 0.75
   2 !    8.2   0.1   0.00077         2     182     289 ..     115     187 ..      91     198 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.7e-05
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                 +l GpNg+GK++ ++  
  EHT98495.1 32 VGLLGPNGAGKTTTFYMV 49
                689**********88765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00077
      AAA_21 182 krllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrlle 280
                 ++++ +l+++++ +++++ + +                                +lS G +r   ++ al++ +   +++l+DEp +g +P  +  + +
  EHT98495.1 115 QDRANELMDEFHIAHLRDNMGQ--------------------------------SLSGGERRRVEIARALAANP---KFILLDEPFAGVDPISVIDIKK 178
                 5555555555555555555553................................56888888888888888777...99************44444445 PP

      AAA_21 281 llkelsrng 289
                 +++ l++ g
  EHT98495.1 179 IIEHLRDSG 187
                 555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0013       3.5      11      40 ..      11      45 ..       2      52 .. 0.66
   2 !    6.7   0.0    0.0017       4.4     121     209 ..     119     208 ..      80     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
                TTEECEEEEEETTSS.....EEEEEESTTSSHHHH CS
                xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
       SMC_N 11 ksyagktvilpfsks.....ftaivGpNGSGKsnl 40
                k y+g++v+ ++s +     +  ++GpNG+GK+  
  EHT98495.1 11 KAYKGRRVVEDVSLQvksgeIVGLLGPNGAGKTTT 45
                66777777666654400011556899******975 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
                 HHHHHHHHCTT-STT...CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC-SCEE CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske...lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr.eemlekadklv 209
                 +e+++ ++ a++  +   +LSgGe+  v +a  +A +      + llDe  a  D   v  + +++++ +++   ++++ ++ +e+l+ +++ +
  EHT98495.1 119 NELMDEFHIAHLRDNmgqSLSGGERRRVEIARALAANP----KFILLDEPFAGVDPISVIDIKKIIEHLRDSgLGVLITDHNvRETLAVCERAY 208
                 3444444444443324448**********999988643....4999*******************99988765667777665234555555555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.6e-06     0.022     127     162 ..      27      62 ..       5      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.6e-06
       T2SSE 127 rerglilvsGgTgsGKttllyallkeinksderivt 162
                 ++  ++ + G+ g GKtt+ y+++ +++ +  riv+
  EHT98495.1  27 KSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGRIVI 62 
                 555555678*********************999985 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.1e-05      0.11      18      36 ..      28      46 ..      11      49 .. 0.77
   2 ?   -3.6   0.0       5.2   1.3e+04     168     176 ..     106     114 ..      85     129 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.1e-05
      AAA_23 18 skgltlItGpNGaGKTTil 36
                s  ++ + GpNGaGKTT +
  EHT98495.1 28 SGEIVGLLGPNGAGKTTTF 46
                44688899*********76 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.2
      AAA_23 168 ekkllekle 176
                 +++l e++ 
  EHT98495.1 106 RDDLTEEQR 114
                 333333221 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00033      0.85      62      80 ..     154     172 ..     115     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00033
     SbcCD_C  62 palrlvfLDEAFsklDees 80 
                  ++++++LDE F+++D+ s
  EHT98495.1 154 ANPKFILLDEPFAGVDPIS 172
                 45899***********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1796.29
//
Query:       EHT98496.1  [L=184]
Description: LptA family LPS transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-31  107.5   1.3    5.6e-31  107.1   1.3    1.2  1  OstA      OstA-like protein
  ------ inclusion threshold ------
      0.058   13.9   0.2       0.12   13.0   0.2    1.5  1  Cna_B     Cna protein B-type domain


Domain annotation for each model (and alignments):
>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   1.3   6.3e-35   5.6e-31       1     113 []      37     149 ..      37     149 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 6.3e-35
        OstA   1 eIeAdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkkskkierleakg.tatfrqkvdlvgeqirGkAerieydskkeiivLtgnatltqnsn 98 
                 +I++++++ld + +va+ftGnVvvtqG+++++Adkv+vt++ +++k + ++a+g +atf q+ d +g++++G+A +++y+ ++++++Ltgna ++q ++
  EHT98496.1  37 NIDSENQSLDLQGNVATFTGNVVVTQGSIKITADKVVVTRPGGDSKKTIVDAYGnPATFYQMQD-NGKPVQGHASKLHYELANHFVELTGNAYIEQLDS 134
                 69***********************************************************999.********************************** PP

        OstA  99 sveGseitydikeek 113
                 +++G++ity +ke+k
  EHT98496.1 135 NIKGDRITYLVKEQK 149
                 ***********9985 PP

>> Cna_B  Cna protein B-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.3e-05      0.12      45      84 ..     125     160 ..      93     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
       Cna_B  45 wkytftnLpkydeaGkeikYtVeEeavpgYtstvsgseke 84 
                  ++  ++L+ +  +G++i+Y V+E++++ Y++    ++k 
  EHT98496.1 125 GNAYIEQLDSN-IKGDRITYLVKEQKMQAYSQG---QSKR 160
                 45667888888.89****************943...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1473.90
//
Query:       EHT98497.1  [L=193]
Description: YrbK family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-57  191.9   1.2    7.9e-57  191.7   1.2    1.0  1  LptC      Lipopolysaccharide-assembly, LptC-related


Domain annotation for each model (and alignments):
>> LptC  Lipopolysaccharide-assembly, LptC-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   1.2   4.4e-61   7.9e-57       1     176 []      13     185 ..      12     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 4.4e-61
                 XXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEEEEETTTTEEEEESEEEEEE-TTS.EEEEEE-SEEEE-T. CS
        LptC   1 llialvlaawfyslnqedspksekqlkkkksepdyvaenfettqydedGklqyrltadklehypdddqteftnPvliiydegt.qswkvtAkkAkltkk 98 
                 +lialvl++w + + + d+++   ++  ++++p+y+  n +t++y+++G l+y+l++dk+++++++++++f+nPv+++yde++ ++w+v+++kAkltk 
  EHT98497.1  13 ALIALVLIGWNFTNRDSDDGA---PVMNNDQTPTYTSANSHTVVYNPQGGLAYKLISDKVTYFENTGTSWFDNPVMTTYDENKmPTWTVRSDKAKLTK- 107
                 589999999999999999999...**************************************************************************. PP

                 TSEEEEEEEEEEEE-SSS-SEEEEEEEEEEEETTT-EEEEEEEEEEEESS-EEEEEEEEEETTTTEEEEEEEEEETT- CS
        LptC  99 gqeleLegnVviqsltkksrlqtitTeeltvnlktkdittdqpVkitgpnfsttGvgmkanlktkkieLlskVrgrye 176
                 +++l+L+g+V+++ l+++s+l++i+T++++vnl t+d+ +d++V+++g  f++tG++m++nl+tk++eLl+kV+++ye
  EHT98497.1 108 DRMLYLYGHVELNALAPDSELERIKTDNAQVNLVTQDVASDDQVTLYGRSFNSTGMKMRGNLRTKQAELLEKVKTSYE 185
                 *****************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1532.39
//
Query:       EHT98498.1  [L=188]
Description: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.3e-12   45.2   0.0    3.4e-10   40.1   0.0    2.1  2  Hydrolase_3  haloacid dehalogenase-like hydrolase
     0.0023   18.0   0.0      0.013   15.5   0.0    2.1  1  HAD_2        Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0041        37      24      55 ..      62      93 ..      29      98 .. 0.82
   2 !   40.1   0.0   3.8e-14   3.4e-10     182     248 ..      96     162 ..      92     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0041
                 HHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3 24 ikklkekgikvviATGRslravlpvleelgld 55
                 i+ l   +i+v+i TGR  r +++  + lg+ 
   EHT98498.1 62 IRCLLTSDIEVAIITGRTARLLEDRCKTLGIR 93
                 55566789**************9999999986 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 3.8e-14
                  EETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGG CS
  Hydrolase_3 182 mpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnne 248
                  ++ + +K  a ++l+ +l++s e+v+ +GD+  D + + ++gl+vA+++a++ + + A+yvt  ++ 
   EHT98498.1  96 YQGQSDKLLAYRELLDTLSLSDEQVAYIGDDLIDWPVMAKVGLSVAVADAHPLLLARARYVTRIAAG 162
                  667889********************************************************87665 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06     0.013      92     176 ..      66     141 ..       7     143 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
       HAD_2  92 keagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                    +++++i+T ++++ +e+  + lgi ++++   +++d          ++++l+ l l+ e+v y+GD   D     k+g+ v+
  EHT98498.1  66 LTSDIEVAIITGRTARLLEDRCKTLGIRHLYQ---GQSDK------LLAYRELLDTLSLSDEQVAYIGDDLIDWPVMAKVGLSVA 141
                 56789999999999999999999999988775...44443......4469***********************999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1505.95
//
Query:       EHT98499.1  [L=328]
Description: D-arabinose 5-phosphate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-34  117.5   0.1    4.9e-34  117.0   0.1    1.3  1  SIS       SIS domain
    1.1e-12   48.2   8.8    3.5e-06   27.4   0.5    2.7  3  CBS       CBS domain
    2.5e-05   24.3   1.5      0.005   16.9   0.1    2.4  2  SIS_2     SIS domain
  ------ inclusion threshold ------
      0.077   12.6   0.0       0.12   12.0   0.0    1.3  1  DUF2529   Domain of unknown function (DUF2529)


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.1   1.1e-37   4.9e-34       2     130 ..      46     176 ..      44     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 1.1e-37
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 +a++ +++v+G+G+s++i+k++a++++++g+++++v++a++ + + l+++ +dd+v++is sge+++ +a+++++k+++ k+i++T+ ++s++ar ad+
  EHT98499.1  46 YACKGKVVVMGMGKSGHIGKKMAATFASTGTPAFFVHPAEASHGD-LGMVGKDDVVLAISNSGESSEILALIPVVKRQQIKLICLTSRPESAMARAADI 143
                 45666************************************7777.***************************************************** PP

                 EEEEEEECHC...SSSHCHHHHHHHHHHHHHHH CS
         SIS 101 alyinaepet...lvastksltaqlaaldalav 130
                 +l++ ++ e+   ++a+t s+ta l+++dalav
  EHT98499.1 144 HLCVKVPQEAcpmGLAPTTSTTAALVMGDALAV 176
                 *******************************97 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.6   1.1e+04      43      56 ..      91     104 ..      91     105 .. 0.83
   2 !   25.6   0.7   2.8e-09   1.3e-05       1      54 [.     206     261 ..     206     264 .. 0.91
   3 !   27.4   0.5   7.8e-10   3.5e-06       2      54 ..     274     325 ..     273     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
                 EEEEEHHHHHHHHH CS
         CBS  43 vGivtlrDllrall 56 
                 +G+v + D++ a++
  EHT98499.1  91 LGMVGKDDVVLAIS 104
                 59999999999886 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 2.8e-09
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllra 54 
                 V+dim++  +++ v+ d++l++al ++++k++ +l  +Vd+  k+ G++t+ Dl r 
  EHT98499.1 206 VSDIMHSgdELPHVTRDASLRDALLEITRKNL-GLtVIVDDLMKIEGVFTDGDLRRI 261
                 89999999999****************9***9.8856799999***********986 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 7.8e-10
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 +++mtr  + v+p+    +al+lm  k++++l+V d+d+ l+G+v+++D lra
  EHT98499.1 274 AEVMTRGGIRVRPNVLAVDALNLMQTKNITSLLVADDDH-LLGVVHMHDMLRA 325
                 689999999***************8888****7776555.***********97 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.2     0.002       8.8      15      60 ..      28      74 ..      17      93 .. 0.74
   2 !   16.9   0.1   1.1e-06     0.005     102     138 .]      95     131 ..      90     131 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.002
                HHSHHHHHHH.HHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-B CS
       SIS_2 15 etqaeaieka.aeliadslenggkvlvfGsGhSaalaeelaaraggl 60
                e+  + i++a ++++a   + +gkv+v+G G S  + +++aa + + 
  EHT98499.1 28 EQLDQYINEAfSDACAMIYACKGKVVVMGMGKSGHIGKKMAATFAST 74
                555566655536889999999*************9999999988775 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.1e-06
                 -TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 102 kpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                  + Dv l iSnsG++  +++++  +k++++k+i lts
  EHT98499.1  95 GKDDVVLAISNSGESSEILALIPVVKRQQIKLICLTS 131
                 579********************************98 PP

>> DUF2529  Domain of unknown function (DUF2529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05      0.12      70     134 ..      85     151 ..      28     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
                 -TT-....---TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEESS---T..TGGGSSS-EE----S CS
     DUF2529  70 eeek....eltetDrvllfsresndkealklakkleekgievvavsskvkeedalteladvfidlklkk 134
                 e ++     + + D vl +s++ +++e+l+l+  ++ ++i++++++s+++++  ++  ad+++ +k+++
  EHT98499.1  85 EASHgdlgMVGKDDVVLAISNSGESSEILALIPVVKRQQIKLICLTSRPESA--MARAADIHLCVKVPQ 151
                 444445556778899999******************************9998..588888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2544.62
//
Query:       EHT98500.1  [L=326]
Description: putative calcium/sodium:proton antiporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-52  177.7  34.5    2.4e-26   92.5  14.3    2.0  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5  14.3   1.3e-30   2.4e-26       2     150 ..       4     144 ..       3     145 .. 0.94
   2 !   91.5  12.2   2.8e-30     5e-26       2     150 ..     176     318 ..     175     319 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.3e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +++l+i++lll++ +ad+lv sa+ + +s+gi++ ++G+t++++g+slpE+i+s++aa  g++dla+g++lGsni n+ll++G +al+ +l+++s+ + 
  EHT98500.1   4 ATALLIIGLLLLAYGADRLVFSAAILCRSFGIPPLIIGMTVVSIGTSLPEIILSFSAAQYGQMDLAVGTALGSNITNILLILGGAALLHPLSIHSNLIR 102
                 5789*********************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 ++l+l++lv+ll+ +   +l+     ++ l++l+g++l+++ a+yl++ +
  EHT98500.1 103 RELPLMVLVSLLSGI---TLF-----DNYLSRLDGIALIAIAAIYLIVTI 144
                 *****9999999933...333.....399*****************9876 PP

  == domain 2  score: 91.5 bits;  conditional E-value: 2.8e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +f++++++l+++ +++++++++a+++a+++g+s+ v+Gltl+A g+slpEl++ i+ al+ge d+aign++G+ni nl +v+Gl+ali + +vd + ++
  EHT98500.1 176 AFLWLAVALIILPMSTHMVIDNATVFADYFGVSELVMGLTLIAVGTSLPELATVIAGALKGEDDIAIGNLIGANIYNLAIVLGLPALIHPGSVDYHAFA 274
                 6899************************************************************************************999999999** PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 +d  ++l v++l+ +l+ll        +r+ +  g +ll  +++ + l++
  EHT98500.1 275 RDYWIMLGVSVLFAMLCLLRH------RRIGRTAGTLLLCGFFVWVTLLW 318
                 ***999999999977666544......9***********99999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2347.62
//
Query:       EHT98501.1  [L=271]
Description: putative ATP-binding component of an ABC superfamily toluene transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-30  107.0   0.0    1.4e-30  106.6   0.0    1.2  1  ABC_tran     ABC transporter
    4.3e-08   33.3   0.0     0.0075   16.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.4e-05   23.8   0.0      5e-05   23.3   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0009   19.5   0.0     0.0015   18.8   0.0    1.6  1  AAA_22       AAA domain
     0.0012   19.3   0.0     0.0017   18.8   0.0    1.3  1  AAA_16       AAA ATPase domain
     0.0029   17.2   1.8      0.042   13.4   1.8    2.4  1  AAA_25       AAA domain
     0.0072   16.1   0.2      0.015   15.0   0.2    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0088   16.5   0.0      0.028   14.8   0.0    1.8  3  AAA          ATPase family associated with various cellular a
     0.0095   15.8   0.0       0.02   14.8   0.0    1.5  1  AAA_3        ATPase family associated with various cellular a
  ------ inclusion threshold ------
      0.013   16.0   0.1      0.019   15.5   0.1    1.2  1  AAA_23       AAA domain
       0.02   14.7   0.1      0.032   13.9   0.1    1.3  1  AAA_24       AAA domain
      0.046   12.5   2.2        0.7    8.6   0.8    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.092   12.8   0.0       0.17   11.9   0.0    1.4  1  AAA_14       AAA domain
       0.11   12.5   0.1       0.17   11.8   0.1    1.3  1  NACHT        NACHT domain
       0.13   11.7   0.0        0.2   11.1   0.0    1.3  1  RecA         recA bacterial DNA recombination protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   1.2e-33   1.4e-30       2     136 ..      25     172 ..      24     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 1.2e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTC......H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxx......x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren......esdee......i 85 
                 +++sl++ +g+++ai+G++G GK+tLl+l+ g+l+p++Gei+++++++ +   ++l ++rk++++l+q   lf +ltv+en      e   +       
  EHT98501.1  25 DDISLTVPKGKVTAIMGPSGIGKTTLLRLIGGQLQPDSGEIWFRDENIPTlsrTRLYEARKKMSMLFQSGALFTDLTVYENvawplrE-HTRlpaallH 122
                 89******************************************99999988899999*************************98852.3335666666 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++ kl+ ++l+   +  +p++LSgG+ +rvalara++ +p+l+++DEp+
  EHT98501.1 123 STVMMKLEAVGLRGAAQ-LKPAELSGGMARRVALARAIALEPELIMFDEPF 172
                 77777777777666654.788*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05     0.013       1      58 [.      36      87 ..      36     105 .. 0.72
   2 !   16.1   0.0   6.3e-06    0.0075     230     302 ..     138     209 ..     125     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipf 58
                ++++ Gp g GK++LL+++ +       ++++  e + + +++   s+ +ly+ ++++
  EHT98501.1 36 VTAIMGPSGIGKTTLLRLIGGQ------LQPDSGEIWFRDENIPTLSRTRLYEARKKM 87
                699****************554......556666666666666666666666655554 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.3e-06
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS.plll 302
                  +l ++elS G+ r  al+ a++  +    l+ +DEp  g +P  +  l++l+ +++++ g  +i+++H+ p++l
  EHT98501.1 138 AQLKPAELSGGMARRVALARAIALEP---ELIMFDEPFVGQDPITMGVLVKLIdELNHALGLTCIVVSHDvPEVL 209
                 56778999****99999999999988...9*************999*******666666***********99987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.2e-08     5e-05      75     130 ..       9      65 ..       1      80 [. 0.81

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.2e-08
                  TTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  75 lgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++++ +  s  +++ +++++  + + k+++++G+SG+GK+tL+  + ++l+   ge+
   EHT98501.1   9 VEVRGVSFSRGDRKIFDDISLTVPKgKVTAIMGPSGIGKTTLLRLIGGQLQPDSGEI 65 
                  55666667777788888888877666*******************999988877776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-06    0.0015       6      38 ..      35      70 ..      32     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaee...e 38
                ++++++G+sG+GKTtllr +  ql+ ++   +   e
  EHT98501.1 35 KVTAIMGPSGIGKTTLLRLIGGQLQPDSGEIWfrdE 70
                7899****************9999765544445443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-06    0.0017      25      59 ..      35      71 ..      21     170 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekd..ggiflrgk 59
                 ++ + G+sG+GK++l+r +  +l+ d  +++f  ++
  EHT98501.1 35 KVTAIMGPSGIGKTTLLRLIGGQLQPDsgEIWFRDEN 71
                67899***************99999995334443333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.8   3.5e-05     0.042      29      57 ..      30      58 ..      18     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-05
      AAA_25 29 llpagelallaGapgtGKttlaldlalav 57
                 +p+g++++++G++g GKttl+  ++  +
  EHT98501.1 30 TVPKGKVTAIMGPSGIGKTTLLRLIGGQL 58
                579******************86655555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.2e-05     0.015      12      39 ..      24      51 ..      21      56 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
      AAA_29 12 fdghtieidlkg.atlltGpsGsGKSTll 39
                fd+ ++++  kg +t ++GpsG GK+Tll
  EHT98501.1 24 FDDISLTVP-KGkVTAIMGPSGIGKTTLL 51
                666666775.666**************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-05     0.028       3      52 ..      39      93 ..      37      99 .. 0.82
   2 ?   -3.1   0.0         8   9.6e+03      52      66 ..     155     170 ..     142     171 .. 0.69
   3 ?   -3.1   0.0       8.3   9.9e+03      87     111 ..     181     204 ..     175     210 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
                EESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfke 52
                ++Gp G+GKT+l + +  +l+     + f   + ++l    + e+ kk+++lf++
  EHT98501.1 39 IMGPSGIGKTTLLRLIGGQLQpdsgeIWFRDENIPTLSRTRLYEARKKMSMLFQS 93
                68*****************964444466888888888888888999999999986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8
                 HHHHTS.TSEEEEEET CS
         AAA  52 eakeka.kpsilfiDE 66 
                  a++ a +p  +++DE
  EHT98501.1 155 LARAIAlEPELIMFDE 170
                 4555556788899998 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.3
                 HHHHHHHHHTTTSSSTEEEEEEESS CS
         AAA  87 nqLlteldgvkkkeskvivigatnr 111
                  +L++ +d++++  + +++i+++++
  EHT98501.1 181 GVLVKLIDELNHALG-LTCIVVSHD 204
                 567777777777655.666666665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05      0.02       4      85 ..      39     123 ..      37     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
       AAA_3   4 legvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke.kefefkkGpvfanllladein...rappktqsallea 85 
                 + g  G++kt+l + ++ +l+ +   i f  + +P+ +  t+++e+++  ++ f++G++f++l + +++    r  ++  +all +
  EHT98501.1  39 IMGPSGIGKTTLLRLIGGQLQPDSGEIWFRDENIPT-LSRTRLYEARKkMSMLFQSGALFTDLTVYENVAwplREHTRLPAALLHS 123
                 56778******************************8.778888887664899************9999865557777888888864 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   1.6e-05     0.019      18      39 ..      33      54 ..      15      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
      AAA_23 18 skgltlItGpNGaGKTTildAi 39
                + ++t+I Gp G GKTT+l+ i
  EHT98501.1 33 KGKVTAIMGPSGIGKTTLLRLI 54
                668****************987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.7e-05     0.032       2      22 ..      34      54 ..      33      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                ++  +i+GpsgiGKTtl++ +
  EHT98501.1 34 GKVTAIMGPSGIGKTTLLRLI 54
                57789************9865 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.8   0.00058       0.7     240     263 ..      29      53 ..      26      57 .. 0.91
   2 ?    3.0   0.0     0.029        35     370     407 ..     175     214 ..     144     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00058
                 EEE-SS.EEEEEE-TTSSHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeA 263
                 + +pkG vt+I+G+   GK+TLL+ 
  EHT98501.1  29 LTVPKGkVTAIMGPSGIGKTTLLRL 53 
                 6799*******************85 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.029
                 G--B-..-HHHCHHHHHHHH--EEEEEESS-GCCTTT-SE CS
  ABC_ATPase 370 kepit..plvdrvrelykklgvstilvvggsgdyldvAdt 407
                 ++pit   lv+++ el + lg++ i+v+  + + l++Ad 
  EHT98501.1 175 QDPITmgVLVKLIDELNHALGLTCIVVSHDVPEVLSIADY 214
                 6677733599*********************999999996 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.17       2      32 ..      34      61 ..      33      98 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_14  2 rkilvitGaRrvGKTtllkqlikellvkkes 32
                +k+ +i+G+  +GKTtll+ +  +l     +
  EHT98501.1 34 GKVTAIMGPSGIGKTTLLRLIGGQLQ---PD 61
                6899*************998876666...33 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.17       2      20 ..      36      54 ..      35      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                + ++ G++G+GKTtLl+ +
  EHT98501.1 36 VTAIMGPSGIGKTTLLRLI 54
                67899***********976 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017       0.2      50      88 ..      31      69 ..       5      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE CS
        RecA 50 lpkGriieiyGpessGkttlalhaiaeaqkkggvaafid 88
                +pkG+++ i Gp   Gkttl   +  + q  +g + f d
  EHT98501.1 31 VPKGKVTAIMGPSGIGKTTLLRLIGGQLQPDSGEIWFRD 69
                8******************97777778888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2034.74
//
Query:       EHT98502.1  [L=260]
Description: putative membrane component of an ABC superfamily toluene transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-74  249.4  16.7      4e-74  248.9  16.7    1.2  1  MlaE      Permease MlaE


Domain annotation for each model (and alignments):
>> MlaE  Permease MlaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.9  16.7   2.2e-78     4e-74       2     212 .]      45     256 ..      44     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 248.9 bits;  conditional E-value: 2.2e-78
        MlaE   2 veqlefvgvkslpivlltalftGavlalqgasqlkqfgaesllgslvalalvrelgPvltallvagrvGsaiaAelGtmrvteeidAlevmgidpikyl 100
                 v+ql+++gv sl+i+++ +lf+G+vl+lqg+  l+++gae+ lg lval+l+relgPv+tall+agr+Gsa++Ae+G m++te++  +e+m++dp++++
  EHT98502.1  45 VKQLYSIGVLSLVIIVVSGLFIGMVLGLQGYLVLNTYGAETSLGMLVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKATEQLSSMEMMAVDPLRRV 143
                 89************************************************************************************************* PP

        MlaE 101 vvPrvlAlvialplLtviadlvgilggylvavlllgispgaylqsvqealsl.kdllvgllKalvfGliialiacyqGltakggaegvgrattravvts 198
                 v Pr++A++i++plL++i+++vgi+gg+lv+v++ gi+pg++++ +q+a+++ +d++++++K++vf++++++ia ++G+ a +++eg++rattr+vv++
  EHT98502.1 144 VSPRFWAGFISMPLLALIFTAVGITGGALVGVSWKGIDPGFFWSAMQNAVDFrSDVVNCIIKSAVFAVTVTWIALFNGYDAIPTSEGISRATTRTVVHA 242
                 *************************************************************************************************** PP

        MlaE 199 ivlilvvdlvltll 212
                 ++++l +d+vlt+l
  EHT98502.1 243 SLAVLGLDFVLTAL 256
                 ***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2202.92
//
Query:       EHT98503.1  [L=183]
Description: putative ABC superfamily organic solvent transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   70.5   0.0    1.5e-19   70.1   0.0    1.2  1  MlaD      MlaD protein


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   8.3e-24   1.5e-19       3      80 ..      40     117 ..      38     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 8.3e-24
        MlaD   3 ytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvstggllgekyialdp 80 
                  +++a+fdn +gLkv +pV++ Gv +GrVt+i+l+p t + +vt+d+  k+ + ip+ s+  ++t+gllge++++l+ 
  EHT98503.1  40 WKLYATFDNIGGLKVSSPVKIGGVVIGRVTDISLEPKTLLPRVTMDISDKYANQIPDTSSLAIRTQGLLGEQFLSLNV 117
                 6789**********************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1378.43
//
Query:       EHT98504.1  [L=210]
Description: putative ABC superfamily organic solvent transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-52  176.0   0.1    5.9e-52  175.8   0.1    1.1  1  MlaC      MlaC protein


Domain annotation for each model (and alignments):
>> MlaC  MlaC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.8   0.1   3.3e-56   5.9e-52       2     165 ..      32     197 ..      31     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.8 bits;  conditional E-value: 3.3e-56
                 HHHHHHHHHHHHSHHHHHH-HHHHHHHHHHHTGGGB-HHHHHHHHHCCHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS-EEEE----S-TTTSSE CS
        MlaC   2 evvdevlsalkkdkakkkknpeelrekveellepyfdfermarlvlGkywrkatpeqrqrfveaFrellvrtYasalaeysgqkievkperpspkgkkd 100
                 e++++++++lk+++ak+k++p++lr++v+++l+py++++++++lvlG+ +r+atp+qr+++++aF ++l + Y +ala y+gq+++++p++p +++ + 
  EHT98504.1  32 EAANKTFTRLKSEQAKIKQDPNYLRDIVRQELLPYVQIKYAGALVLGRFYREATPAQREAYFKAFGDYLAQAYGQALALYHGQTYQIEPAKPLGNA-NI 129
                 789******************************************************************************************987.9* PP

                 EEEEEEEEETTS.EEEEEEEEEEEE..TTEEEEEEEEETTEEHHHHHHHHHHHHHHHHCHHHHHHHHH CS
        MlaC 101 vvVkteiiqagg.kpikvdYrlrkk..ggewkiyDviieGvslvatyrsqfasilrqkgidglikkLe 165
                 v ++++ii+++g +p+++d+++rk+  +g+w+++D+i+eGvs+++t+++++ ++lr kgid+l+++Le
  EHT98504.1 130 VAIRVTIIDPQGrPPVRLDFQWRKNsqTGNWQAFDMIAEGVSMITTKQNEWGDLLRTKGIDALTAQLE 197
                 ***********7699*********87899*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1526.96
//
Query:       EHT98505.1  [L=98]
Description: putative anti-sigma B factor antagonist [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-17   63.4   2.1    2.2e-17   63.2   2.1    1.1  1  STAS_2    STAS domain
    1.1e-06   28.3   0.1    1.2e-06   28.2   0.1    1.2  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   2.1   2.4e-21   2.2e-17       1      80 []      14      91 ..      14      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 2.4e-21
      STAS_2  1 LsLsGeldldtaaelreqllealaagaevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGld 80
                L+L Geld+dt+ +l+eq + +++ g +  +D+s +ervD+++lalL++l++   ++g+ l+++g ++ l++l  ly+l+
  EHT98505.1 14 LRLEGELDRDTLLDLWEQRETLIS-G-ATLIDVSALERVDTSGLALLVHLREIVSQQGGALQFVGIGDKLQSLITLYNLQ 91
                89*******************998.7.89*************************************************96 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   1.3e-10   1.2e-06      52     105 ..      41      94 ..      11      98 .] 0.91

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.3e-10
                 EEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGGCC CS
        STAS  52 ildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffdev 105
                  +d sa++ +D+sG++ L+ +++ + ++g+ + +v+i + +   ++ +++++++
  EHT98505.1  41 LIDVSALERVDTSGLALLVHLREIVSQQGGALQFVGIGDKLQSLITLYNLQQII 94 
                 79***********************************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 778.55
//
Query:       EHT98506.1  [L=85]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-12   47.5   0.0    1.9e-12   47.2   0.0    1.1  1  BolA      BolA-like protein
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.24   11.3   0.0    1.3  1  GP70      Gene product 70


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.2e-16   1.9e-12      22      76 .]      20      75 ..       6      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.2e-16
        BolA 22 haeaggetHFkvvivseaFegkslvarhRlvyalLkeel.akgiHALslktktpee 76
                h  ++ ++HF+v  v e F ++s+v+++++vya L e + +++iHA+s+kt+tp+e
  EHT98506.1 20 HVMSNDGSHFQVIAVGELFGELSRVKKQQAVYAPLMEFIaDNRIHAVSIKTYTPAE 75
                4456799********************************6667***********98 PP

>> GP70  Gene product 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.6e-05      0.24       9      32 ..      43      66 ..      42      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
        GP70  9 vVkdthelYrPVadliskneaelv 32
                +Vk ++++Y+P  ++i  n +  v
  EHT98506.1 43 RVKKQQAVYAPLMEFIADNRIHAV 66
                7***************77777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 774.23
//
Query:       EHT98507.1  [L=419]
Description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-128  429.2   0.9   1.6e-128  428.9   0.9    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.9   0.9  9.2e-133  1.6e-128       1     417 []       6     406 ..       6     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: 428.9 bits;  conditional E-value: 9.2e-133
                    EECSS--EEEEE--B-HHHHHHHHHHHGGGBSS.EEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGH CS
  EPSP_synthase   1 vekgkrlegevkvpGsksisnralllAaLaege.stitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtal 95 
                    v++++rl+gev+++G ++++++++l+AaL+++e ++itn+++++D+++++++l +Lg   +k++++++v+++++    f+ap++lv+++++s++al
     EHT98507.1   6 VQGPTRLSGEVTISG-AKNAALPILFAALLAEEpVEITNVPKLRDIDTTMKLLTQLG---AKVERNGSVHVDASGVDVFCAPYDLVKTMRASIWAL 97 
                    5899***********.***************999***********************...578889********9********************* PP

                    HHHHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSSTTHHHHHHHHHHHTTSBSEEEEES-TTH CS
  EPSP_synthase  96 rlLtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaevsSqqvtsllllaallaegtteleelase 191
                    ++L+a++++   ev+L+G+++i++RP+d ++++L+qlGaei++eeg++ka+++    +lkg+ i ++++S+++t ++++aa+la gtt +e++a+e
     EHT98507.1  98 GPLVARFGQG--EVSLPGGCAIGARPVDLHISGLEQLGAEIKLEEGYVKASVN---GRLKGALIVMDKVSVGATVTIMSAATLATGTTVIENAARE 188
                    ********98..9***************************************8...8*************************************** PP

                    HHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEESTS CS
  EPSP_synthase 192 psiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqeeda 287
                    p+i+dt+++l+++g+ki+++gt++ it++G+e+l g  y+v +D++++++flvaAai+gg+v+++n+++++l+    a+ ++l+++ga+i+++e +
     EHT98507.1 189 PEIVDTANFLNTLGAKISGAGTDK-ITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKVLCRNAQPDTLD----AVLAKLRDAGADIETGE-D 278
                    *******************99998.************************************************....78889************.* PP

                    EEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TTSTTT CS
  EPSP_synthase 288 sivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesydDhRi 383
                    +i+ +++g+++k+v+++t+p+++++++++a+f+ ++ v+eg+  +++++++++++++ eL ++Ga++e+e+++ i++++e  l+ga+v+++ D+R+
     EHT98507.1 279 WISLDMHGKRPKAVNVRTAPHPGFPTDMQAQFTLLNLVAEGTGLITETIFENRFMHIPELIRMGAHAEIESNTAICHGVET-LSGAQVMAT-DLRA 372
                    **************************************************************************9999997.*********.**** PP

                    THHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 384 amalalaglvaegeveiddiectdksfpefeekL 417
                    +++l+lag++aeg++ +d+i+++d++++++e+kL
     EHT98507.1 373 SASLVLAGCIAEGTTLVDRIYHIDRGYEHIEDKL 406
                    ********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3198.76
//
Query:       EHT98508.1  [L=93]
Description: DNA-binding transcriptional activator of maltose metabolism [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-39  132.2   0.4    5.9e-39  132.0   0.4    1.1  1  HTH_35         Winged helix-turn-helix DNA-binding
     0.0014   18.3   0.4      0.022   14.5   0.4    2.1  2  HTH_38         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.084   13.3   0.0    1.9  2  HTH_26         Cro/C1-type HTH DNA-binding domain
      0.021   14.9   0.3       0.46   10.6   0.4    2.1  2  HTH_3          Helix-turn-helix
      0.033   14.0   1.1      0.056   13.3   1.1    1.4  1  HTH_IclR       IclR helix-turn-helix domain
      0.035   14.2   0.9      0.076   13.1   0.1    1.8  2  HTH_28         Helix-turn-helix domain
      0.046   13.8   0.1      0.063   13.4   0.1    1.2  1  DprA_WH        DprA winged helix domain
      0.052   13.0   0.6       0.17   11.3   0.2    1.9  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
      0.068   13.2   0.2       0.11   12.6   0.2    1.3  1  HTH_20         Helix-turn-helix domain
      0.072   12.9   0.0       0.19   11.5   0.1    1.7  2  HTH_10         HTH DNA binding domain
      0.081   12.8   0.3        1.2    9.0   0.9    2.2  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.12   12.0   0.4        0.2   11.2   0.4    1.4  1  HTH_24         Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.4     4e-42   5.9e-39       1      74 [.       7      81 ..       7      82 .. 0.97

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 4e-42
      HTH_35  1 dWhpadIiAaLrkrgttLaalsreaglssstlsnaltrpwpkgEalIAeaLgvppeeiwPsRYekd.tkkilsrk 74
                dWhpadIiAaLrkrgttLaalsr+aglssstl+nal+rpwpkgE+lIA+a++v+p+eiwPsRY++  t+++l+rk
  EHT98508.1  7 DWHPADIIAALRKRGTTLAALSRQAGLSSSTLANALSRPWPKGEWLIADAINVHPSEIWPSRYYDPeTNSLLDRK 81
                9****************************************************************9899999987 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.4   1.5e-05     0.022      13      43 ..      14      44 ..      12      44 .. 0.95
   2 ?    1.6   0.0      0.16   2.4e+02      26      35 ..      53      62 ..      52      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
      HTH_38 13 IerllaeGlslreIArrLgrspsTIsRElkR 43
                I++l+++G +l++  r+ g s sT ++ l R
  EHT98508.1 14 IAALRKRGTTLAALSRQAGLSSSTLANALSR 44
                9*************************99987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
      HTH_38 26 IArrLgrsps 35
                IA  ++++ps
  EHT98508.1 53 IADAINVHPS 62
                9********9 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.6e-05     0.084       5      32 ..      16      43 ..      13      49 .. 0.89
   2 ?    0.1   0.0      0.76   1.1e+03      46      58 ..      53      65 ..      52      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.6e-05
      HTH_26  5 lmadrgitkseLargtgisaatlsrlvk 32
                ++++rg t + L+r++g+s++tl++ ++
  EHT98508.1 16 ALRKRGTTLAALSRQAGLSSSTLANALS 43
                6899******************987665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.76
      HTH_26 46 iCdaLgctpgDLl 58
                i+da ++ p++++
  EHT98508.1 53 IADAINVHPSEIW 65
                89********996 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00031      0.46       2      28 ..      15      40 ..      13      44 .. 0.84
   2 ?    2.3   0.0      0.12   1.7e+02      43      55 .]      52      64 ..      51      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00031
                HHHHHHTTHHHHHHHHHHTSSHHHHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisr 28
                ++lR ++g +++ L++ +G+s st+++
  EHT98508.1 15 AALR-KRGTTLAALSRQAGLSSSTLAN 40
                4445.5******************986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                HHHHHHTSEHHHH CS
       HTH_3 43 klakaLgvsldel 55
                ++a+a +v+++e+
  EHT98508.1 52 LIADAINVHPSEI 64
                6888888888875 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.1   3.7e-05     0.056       7      37 ..      12      40 ..      11      44 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHH CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhR 37
                +i+ al++++   tl+ l+r++gl+ St  +
  EHT98508.1 12 DIIAALRKRGT--TLAALSRQAGLSSSTLAN 40
                45555555555..7**************765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.1e-05     0.076       4      35 ..      12      44 ..      11      44 .. 0.84
   2 ?   -0.8   0.0       1.2   1.8e+03      42      50 ..      75      83 ..      73      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.1e-05
      HTH_28  4 eiiklla.aGhsvreaArelgisrrtvyrWikr 35
                 ii +l  +G + ++++r+ g+s++t+   ++r
  EHT98508.1 12 DIIAALRkRGTTLAALSRQAGLSSSTLANALSR 44
                57777775788****************988876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
      HTH_28 42 agLvprrrr 50
                ++L++r++r
  EHT98508.1 75 NSLLDRKKR 83
                589999997 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.2e-05     0.063      15      47 ..      11      43 ..       3      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.2e-05
     DprA_WH 15 rrvLaaLgpePvhvDqLvrrtglpaaevsaaLl 47
                + + aaL    +++ +L+r++gl+ ++++ aL+
  EHT98508.1 11 ADIIAALRKRGTTLAALSRQAGLSSSTLANALS 43
                5799**************************996 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00011      0.17      20      49 ..      13      43 ..      11      44 .. 0.89
   2 ?   -0.7   0.0      0.63   9.3e+02      33      45 ..      53      65 ..      52      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
  HTH_Tnp_ISL3 20 ilellles.rsvkavArqlgvSwtTVwrild 49
                  i+++l+++  + +a +rq g+S +T+ ++l 
    EHT98508.1 13 IIAALRKRgTTLAALSRQAGLSSSTLANALS 43
                  899999999****************988775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.63
  HTH_Tnp_ISL3 33 vArqlgvSwtTVw 45
                  +A+  +v+++ +w
    EHT98508.1 53 IADAINVHPSEIW 65
                  79999*****999 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   7.2e-05      0.11      13      45 ..      11      42 ..       9      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.2e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHH CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHL 45
                ++i +aL r++g t+++l ++ +ls +tl + L
  EHT98508.1 11 ADIIAAL-RKRGTTLAALSRQAGLSSSTLANAL 42
                69*****.********************98765 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00013      0.19      21      46 ..      19      44 ..      18      46 .. 0.93
   2 ?   -3.3   0.0       5.6   8.3e+03      29      40 ..      53      64 ..      53      65 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      HTH_10 21 PRrvtlkeLAkelGIskstlsehLrk 46
                 R +tl++L+ + G+s stl + L++
  EHT98508.1 19 KRGTTLAALSRQAGLSSSTLANALSR 44
                6999******************9986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.6
      HTH_10 29 LAkelGIskstl 40
                +A+++++ +s +
  EHT98508.1 53 IADAINVHPSEI 64
                788999988765 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9   0.00081       1.2       8      36 ..      13      40 ..      11      44 .. 0.78
   2 ?    0.6   0.0      0.35   5.2e+02      23      35 ..      53      65 ..      53      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00081
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                   I++aL++ + ++ a+L+++ GlS st ++
     EHT98508.1 13 IIAALRKRG-TTLAALSRQAGLSSSTLAN 40
                   666666666.589************9876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.35
  HTH_AsnC-type 23 LAervGlSestvl 35
                   +A+++++ +s+++
     EHT98508.1 53 IADAINVHPSEIW 65
                   89********997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00013       0.2       8      39 ..      13      43 ..      12      44 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
      HTH_24  8 ILelLqknprisqreLAerlglSpstvnrrlk 39
                I+ +L+k  +++ + L+++ glS+st+   l 
  EHT98508.1 13 IIAALRK-RGTTLAALSRQAGLSSSTLANALS 43
                5566666.89****************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 700.39
//
Query:       EHT98509.1  [L=323]
Description: octaprenyl diphosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-75  252.8   0.1    3.2e-75  252.5   0.1    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.5   0.1   1.8e-79   3.2e-75       3     243 ..      31     263 ..      29     275 .. 0.96

  Alignments for each domain:
  == domain 1  score: 252.5 bits;  conditional E-value: 1.8e-79
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafe 96 
                      l++++  y+++ gGKr+Rp++ +l+a+a++ ++   + + + a+ +e++h+a+L+hDD++D+s++RRG+ +a++++Gn++++++gdf+++raf+
       EHT98509.1  31 LINQLGYYIISGGGKRIRPMIAVLSARAMG-YQ--GDLHVTNAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQ 121
                      6788899***********************.44..37889****************************************************** PP

                      HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  97 llaklfekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiq 190
                      +++++  +sl++l+l+se++  ++eG++l+l++ +d+d++   +e y+++++ KTa lf+++ ++ a+la+a++++ +al+d+g++lG+aFQ++
       EHT98509.1 122 MMTSM--GSLRILALMSEAVNVIAEGEVLQLMNVNDPDIT---EESYMRVIYSKTARLFEAASQASAILAEATPAQEKALQDYGRYLGTAFQLI 210
                      *****..*************************99999999...*****************************9999****************** PP

                      HHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSH CS
  polyprenyl_synt 191 DDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkka 243
                      DD+lD+++d e+lgK++g+D++egk tlp+l+a+++ speq+k ++e++++ +
       EHT98509.1 211 DDLLDYSADGETLGKNTGDDLSEGKPTLPLLHAMNNGSPEQAKMIREAIEQGN 263
                      ************************************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2750.56
//
Query:       EHT98510.1  [L=103]
Description: 50S ribosomal subunit protein L21 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-38  130.1   1.9    3.5e-38  129.9   1.9    1.0  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   1.9   1.9e-42   3.5e-38       1     101 []       1     101 [.       1     101 [. 0.99

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1.9e-42
                     XEEEEECSTEEEEESSSEEEEEESSSSSTTCEEEESSEEE....EE.ECTSSSESSTCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EEEE CS
  Ribosomal_L21p   1 myAiietgGkqykVeegdvlkvekleaevgdkveldkVllvgskddvkvGaplvegakVeaevvehgkgkkiivfkkkrrknyrrkqghRqkytk 95 
                     myA+++ gGkq++V+eg+++++ekl+ + g+++e+d+Vl++ + +dvk+Gaplv+g  ++aevv+hg+g+k++++k++rrk+yr++ ghRq++t 
      EHT98510.1   1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETIEFDQVLMIANGEDVKIGAPLVSGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQAGHRQWFTD 95 
                     9********************************************************************************************** PP

                     EEEEEE CS
  Ribosomal_L21p  96 lrItkI 101
                     ++It+I
      EHT98510.1  96 VKITGI 101
                     ****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 765.85
//
Query:       EHT98511.1  [L=85]
Description: 50S ribosomal subunit protein L27 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-39  133.4   3.1    2.4e-39  133.2   3.1    1.0  1  Ribosomal_L27  Ribosomal L27 protein
  ------ inclusion threshold ------
      0.023   14.5   0.1      0.047   13.5   0.1    1.5  1  RCC1_2         Regulator of chromosome condensation (RCC1) re


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   3.1   2.7e-43   2.4e-39       1      79 []       2      82 ..       2      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 2.7e-43
  Ribosomal_L27  1 AhkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfe..kkkkrkyvsv 79
                   AhkkagGst+ngrds++krlGvK+fgg+ v ag+IivrQrgtkfh+G+nvg+G+dhtlfA++dG+Vkfe    ++rky+s+
     EHT98511.1  2 AHKKAGGSTRNGRDSNAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGCGRDHTLFATADGKVKFEvkGPNNRKYISI 82
                   9********************************************************************754779***996 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.2e-06     0.047       4      20 ..      51      67 ..      48      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-06
      RCC1_2  4 vsaGdyHscaLtedGeV 20
                v +G++H+++ t+dG+V
  EHT98511.1 51 VGCGRDHTLFATADGKV 67
                67**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 638.24
//
Query:       EHT98512.1  [L=390]
Description: GTPase involved in cell partioning and DNA repair [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-59  199.3   5.3    3.4e-59  198.9   5.3    1.2  1  GTP1_OBG      GTP1/OBG
      5e-23   81.4   0.0    8.6e-23   80.6   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    1.4e-08   34.4   0.0    1.2e-07   31.3   0.0    2.0  1  FeoB_N        Ferrous iron transport protein B
     0.0023   16.9   0.2        1.9    7.4   0.1    2.3  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
  ------ inclusion threshold ------
      0.065   13.1   0.0        0.4   10.6   0.0    2.1  2  RsgA_GTPase   RsgA GTPase
      0.083   12.2   0.0       0.13   11.6   0.0    1.2  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
       0.14   12.2   0.0        0.3   11.1   0.0    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   5.3   1.3e-62   3.4e-59       1     154 [.       4     157 ..       4     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 198.9 bits;  conditional E-value: 1.3e-62
                 EEEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEETTTT CS
    GTP1_OBG   1 vdevkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetg 99 
                 vde++i v aG+GG+Gcvsfrreky+pkggpdGGdGG+GGdv+l+ade+lntl+d++++k ++Ae+G+nG++++++Gk+gkd++ikvPvgt v d+ tg
  EHT98512.1   4 VDEATILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVYLVADENLNTLIDYRFEKSFRAERGQNGQSRDCTGKRGKDITIKVPVGTRVIDQGTG 102
                 79************************************************************************************************* PP

                 EEEEEE-STT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEEC CS
    GTP1_OBG 100 evladltedgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelk 154
                 e+l d+t+++++++vakGG +G+Gn++fkss nr+pr++++G+ ge+r+l+Lel 
  EHT98512.1 103 ETLGDMTRHQQTLMVAKGGWHGLGNTRFKSSVNRTPRQKTMGTAGEKRDLQLELM 157
                 *****************************************************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.4e-26   8.6e-23       1     114 []     161     284 ..     161     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.4e-26
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT.......TTCS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkaflalee.adlillvvdas.......eekl 90 
                 +v+ +G pN+GKSt+i+a + +k +v+d+p+tT+ +  g v+++  ++++++D+pGliega e+ glg +fl++ e + ++l+++d++        e+ 
  EHT98512.1 161 DVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSeQSFVVADIPGLIEGAAEGAGLGIRFLKHLErCRVLLHLIDIApidesdlVENA 259
                 5899*************************************9777799*************************9998*********9988764442223 PP

                 HHHHHHHHHHHHH.TTSEEEEEEES CS
    MMR_HSR1  91 kpldeeleellee.akkplilvlnk 114
                 + +  ele++ ++  +kp  lv+nk
  EHT98512.1 260 RIILGELEKYSDKlFNKPRWLVFNK 284
                 3344556666555889999999998 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.9e-11   1.2e-07       3     152 ..     162     324 ..     160     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.9e-11
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHC.TSSSEEEEEEEGG.....GHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflle.eepdvvvnvvdat.....nlern 94 
                 v ++G pn+Gk+t++ a++ ak kv+ +p +t   + g +++++ +++ + D+PG   ++  +e   +  +fl + e+  v+++++d +      l  n
  EHT98512.1 162 VGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSeQSFVVADIPGL--IEGAAEGAGLGIRFLKHlERCRVLLHLIDIApidesDLVEN 258
                 6789*************************************98868999******8..56677777788888874266777777776540000044444 PP

                 HHHHHHHHH......TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-..EEEEBTTTTBTHHHH CS
      FeoB_N  95 LyLtlqlle......lgvpvvlalnmideaekkgieidlkkLsekLgvp..vvktsakkkegieel 152
                   ++l  le      +++p  l++n++d +++++ +  +k+++e+Lg +     +sa++++g+ +l
  EHT98512.1 259 ARIILGELEkysdklFNKPRWLVFNKVDLIDEEEAQARAKAIAEALGWEekYYLISAASRQGVTDL 324
                 444444444333333467788888888888888888888888888886422566777777777666 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00076         2      32      50 ..     162     180 ..     158     185 .. 0.89
   2 !    7.4   0.1   0.00072       1.9     173     263 ..     281     366 ..     240     370 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00076
                 EEEEE-TTSSHHHHHHHHH CS
        MeaB  32 vGltGvPGaGkstlvealg 50 
                 vG+ G+P aGkst++ a+ 
  EHT98512.1 162 VGMLGLPNAGKSTFIRAVS 180
                 9**************9986 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00072
                 EEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        MeaB 173 vvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlkktGllekrrrerakeelrelvedellkrvk 263
                 v nk D+ + e+a++  +a       +  +W+ k   +sa   +G+ +l+  + ++ ++  k   +e+++ e+++ +     +++l ++++
  EHT98512.1 281 VFNKVDLIDEEEAQARAKA-----IAEALGWEEKYYLISAASRQGVTDLCWDVMSFINANPKEADVEEKQPEKVEFMWDDYHKEALENAAV 366
                 4555554444444433332.....235679******************************9999999999998888777777777776655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.51   1.3e+03     104     121 ..     164     181 ..     145     188 .. 0.80
   2 ?   10.6   0.0   0.00015       0.4      50      93 ..     279     324 ..     271     332 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.51
                  EECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 104 lvGqSGvGKStLinallp 121
                  ++G   +GKSt+i a+  
   EHT98512.1 164 MLGLPNAGKSTFIRAVSA 181
                  5566679*****998765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
                  EEEEE-GGG--HHHHHHHHHHHHHH..TTSEEEE--TTTHTTHHHH CS
  RsgA_GTPase  50 vivlnKiDlleeeeeleelkeelea..lgyevllvsaktkegleel 93 
                   +v+nK+Dl++eee+  + k+  ea  ++ + +l+sa +++g+++l
   EHT98512.1 279 WLVFNKVDLIDEEEAQARAKAIAEAlgWEEKYYLISAASRQGVTDL 324
                  689***********55555555555115567888999988888876 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.13       5     139 ..     165     303 ..     162     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
   Gtr1_RagA   5 mGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafvee..ylssqkeeifrnvgvliyVfDvesreleedletlkei 101
                 +G  ++GK++  + + +   ++ + +  +t   +   vr+ ++  + + D++G  +  +e   l     + ++++ vl++++D+   + ++ +e+ + i
  EHT98512.1 165 LGLPNAGKSTFIRAV-SAAKPKVADYPFTTLVPSLGVVRMDSEQSFVVADIPGLIEGAAEgaGLGIRFLKHLERCRVLLHLIDIAPIDESDLVENARII 262
                 677788888877766.556677777777888888889999999999999999998888875567778888999************88899999999999 PP

   Gtr1_RagA 102 lealrqyspea...kvfvlihKmDliqedereeifeerkee 139
                 l +l +ys ++     +   +K+Dli+e+e +   ++++e 
  EHT98512.1 263 LGELEKYSDKLfnkPRWLVFNKVDLIDEEEAQARAKAIAEA 303
                 999999999873323467789******99988887777665 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012       0.3      57      96 ..     277     324 ..     266     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
  MMR_HSR1_Xtn  57 pclyvlNKiDlisleeldelare........pnsvviSaekelnldeL 96 
                   p  +v+NK+Dli++ee ++ a+         +++  iSa+++ ++ +L
    EHT98512.1 277 PRWLVFNKVDLIDEEEAQARAKAiaealgweEKYYLISAASRQGVTDL 324
                   56689***********99988866778888779999**9999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3251.00
//
Query:       EHT98513.1  [L=477]
Description: D-alanyl-D-alanine carboxypeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-158  528.4   0.0   1.5e-158  528.2   0.0    1.0  1  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family
    7.4e-08   32.2   0.0    1.2e-05   25.1   0.0    2.7  2  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
      0.014   14.6   0.2       0.79    8.9   0.0    2.7  3  Transpeptidase   Penicillin binding protein transpeptidase do


Domain annotation for each model (and alignments):
>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.2   0.0  2.5e-162  1.5e-158       3     443 ..      21     468 ..      19     469 .. 0.99

  Alignments for each domain:
  == domain 1  score: 528.2 bits;  conditional E-value: 2.5e-162
                    HHHHHHHTT.GCGTTSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHHHHT-TT-EEEEEEEESSEEETTEEESCEEEEECSBTTBBHH CS
  Peptidase_S13   3 anldeilad.peLegavagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAlltLganfrftTevvaegtvenrnlegnlvlvgsGDPtLsae 97 
                    a +de+++  p+  ga+++++vq++ + ++++d++g++++lPASt+K++TA+aAll+Lg ++rf+T+++++g++ +++l+g+lv+ ++GDPtL ++
     EHT98513.1  21 APVDEYMQYlPD--GANLALLVQKVGATTPIIDYHGKQMALPASTMKVITALAALLELGGDYRFQTTFETKGALIDGTLNGDLVACFAGDPTLGRQ 114
                    679999999999..********************************************************************************** PP

                    HHHHHHHHHHHTT-SEESS-EEEE-TTC-S-SS-TTSBGGGTTBGGG----SS-SGGGEEEEEEE-.SSTTSB-EEEECTTTTTCEEEEEEE..EE CS
  Peptidase_S13  98 dldalaeelkksGvtkiegelvvDdslfaserlapgwewaDltsgysapieaaiidagvvivevtp.qkeGetaavtvsakiaiaalknvkv..et 190
                    dl+++++ lkk+G+t+i+g+lv+D+s+fas++ apgw+w+D+t+++sap++aai+d+++++v++++ +k+Ge a+v+++++++  +l++v++  ++
     EHT98513.1 115 DLRNMVAALKKQGITHIKGNLVIDTSVFASHDAAPGWPWNDMTQCFSAPPAAAIVDKNCFSVSLYSaDKPGENAFVRIASYYPAHMLSQVRTigRN 210
                    ******************************************************************9*************************9*** PP

                    STTSCCEEEEEEECTSSEEEEEEEEETTSS-EEEEEE-SSHHHHHHHHHHHHHHHTT-EESS-EEEESS-.TTSEEEEEEEECEHHHHHHHHHHHT CS
  Peptidase_S13 191 aaeaekkkliersfgtntlkvtGslpedaeplklslavqdpaayagallkkkLkeqGitvsgevgiaeap.esaevlashqSaPLsellkkmmkkS 285
                    + e ++++l++++ + n++++tG+l ++++pl+l++avqd aa ag++lk +L+++Gi  sg+++++++  e ++vlas qSaPL++ll  m+kkS
     EHT98513.1 211 SGEGQYCELDVVPGELNRYTLTGCLRQRSDPLPLAFAVQDGAAWAGEILKSELRSAGIDYSGHLLRQTQVtEPGTVLASTQSAPLHTLLHMMLKKS 306
                    *********************************************************************999************************ PP

                    -HHHHHHHHHHHHHHH.CS-BSHHHHHHHHHHHH.HHTT--CTTSB-S-SSS-STT-BBEHHHHHHHHHHHHCTCCHHHHHHCS-BTTTSGGGTTS CS
  Peptidase_S13 286 dNliAesllrevakei.krpgsfeagldavrerL.skagidtanlvLeDgSGLSrknlvtaktlaqlLeaiadqpalqalldsLPvAGesGtlenr 379
                    dN+iA++++r +++++ ++pg+f+ag+davr++L +ka id++n++ +DgSGLSr++l++++t++q+L++ia+++ + +++++LP+AG++Gtl++r
     EHT98513.1 307 DNMIADTVFRTIGHHYfNVPGTFRAGSDAVRRILrEKANIDLGNSIQVDGSGLSRHDLISPATMMQVLQYIAQNDSKLDYISMLPLAGHDGTLQYR 402
                    **********************************999*********************************************************** PP

                    STHCTTTTTTTEEEEEEEETTEEEEEEEEESTTSEEEEEEEEEES..SSCCCTHHHHHHHHHHHHH CS
  Peptidase_S13 380 fkltstpavGkvraKTGsLtgvssLaGyvttasGeklaFsfllng..ldeedgknirdaldellae 443
                     +l++++++Gkv+aKTGsL+gv++LaG++tt sG ++aF+++l+g  + +ed++++r +l++++++
     EHT98513.1 403 GGLHEAGLDGKVSAKTGSLQGVYNLAGFITTSSGARVAFVQFLSGyaVPPEDQRTRRIPLVRFESR 468
                    **********************************************99**************9987 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0047        28       4      45 ..      47      87 ..      45     123 .. 0.75
   2 !   25.1   0.0   1.9e-09   1.2e-05      64     201 ..     291     442 ..     273     443 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0047
                     TSEEEESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEE CS
  Beta-lactamase2  4 geelgvnadeefpaaStiKvpillalleavlegklslderlt 45
                       ++++ +++    aSt+Kv  +la+l ++  g ++ +++++
       EHT98513.1 47 TPIIDYHGKQMALPASTMKVITALAALLELG-GDYRFQTTFE 87
                     5678999999999**********77666554.6666666555 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 1.9e-09
                      SEEEHHHHHHHHHHTT-HHHHHHHHHHHTHHHHH..HHHHHCTHTTSB--SHTT...........CCHHHTTSSTTEE-HHHHHHHHHHHHHTT CS
  Beta-lactamase2  64 ktlslrdlltlmiavSDNtAtnlLidrlgleavn..awlkelglretrlrrklp...........dleaadkdkrntttardlarllealarge 144
                      ++ +l +ll++m++ SDN  ++ + + +g   +n   ++++ g +++r  r l+           ++++   ++ + ++++ +++ l+ +a+++
       EHT98513.1 291 QSAPLHTLLHMMLKKSDNMIADTVFRTIGHHYFNvpGTFRA-GSDAVR--RILRekanidlgnsiQVDGSGLSRHDLISPATMMQVLQYIAQND 381
                      467999**********************9665552267777.454444..33334467888888867777788999****************97 PP

                      .SSHHHHHHHH..HHT-STTTTTTTTTT...TTSEEEEEEEEETTEEEEEEEEEE.TTEEEEEE CS
  Beta-lactamase2 145 .llspeellei..lsnqqfrdrlaaglp...egvrvahKtGeldgvrhdvGivya.dgrpyvva 201
                        l+    +++  l   + + + + gl     + +v  KtG+l gv + +G++++ +g +++++
       EHT98513.1 382 sKLDY---ISMlpLAGHDGTLQYRGGLHeagLDGKVSAKTGSLQGVYNLAGFITTsSGARVAFV 442
                      14444...33334566666667777777544557*********************999999986 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00013      0.79      40      58 ..      55      73 ..      32      96 .. 0.81
   2 ?    2.4   0.0     0.012        72      99     180 ..     301     381 ..     273     388 .. 0.73
   3 ?   -1.1   0.2      0.15   8.8e+02     234     251 ..     402     423 ..     368     443 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00013
                    H--BB-GGGGHHHHHHHHH CS
  Transpeptidase 40 qsqyePGStfKvvtaaaal 58
                    ++ + P+St+Kv+ta+aal
      EHT98513.1 55 KQMALPASTMKVITALAAL 73
                    56778**********9998 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.012
                     HHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTT....SBB-HHHHHHHHHHHHTTT CS
  Transpeptidase  99 ealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiG....ltvtplqlaqayaaiangG 180
                       l+kS+n+    + + +g+ ++ +  + f  G++       e+a +   ++++ +    g G    + ++p  ++q+++ ia++ 
      EHT98513.1 301 MMLKKSDNMIADTVFRTIGHHYF-NVPGTFRAGSDAVRRILREKANIDLGNSIQVD----GSGlsrhDLISPATMMQVLQYIAQND 381
                     56777777777777777777766.56777777777777777777775555554444....33455999***************975 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.15
                     CG....TCTTS--EEEEEEEEE CS
  Transpeptidase 234 ta....avegykvagKTGTAev 251
                     ++    a    kv++KTG  + 
      EHT98513.1 402 RGglheAGLDGKVSAKTGSLQG 423
                     3344335666699999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3464.69
//
Query:       EHT98514.1  [L=158]
Description: transcription elongation factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-32  111.1   2.6    2.8e-32  110.7   2.6    1.2  1  GreA_GreB_N  Transcription elongation factor, N-terminal
      2e-28   98.1   0.1    2.8e-28   97.6   0.1    1.2  1  GreA_GreB    Transcription elongation factor, GreA/GreB, C-te


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   2.6   3.1e-36   2.8e-32       1      71 []       4      74 ..       4      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 3.1e-36
                 EEE-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEEE CS
  GreA_GreB_N  1 iylTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanaev 71
                 i++T  g e+l+eeL+elktv+rp+i+++i+eare+GDl+ENaeY+aA+eeq+++e+rI+e+e+kL+na+v
   EHT98514.1  4 IPMTLRGAERLREELHELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEGRIQEIEAKLSNAQV 74
                 69*******************************************************************98 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.1   3.2e-32   2.8e-28       3      77 .]      83     157 ..      80     157 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 3.2e-32
                 .SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB---EEEEEEX. CS
   GreA_GreB   3 kdvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsgkikveIlkiey 77 
                 +++V fG+tVt+ ++dt+ee+ty+iVg dead ++++iSv+SP+++ L+gk+ +d++ +k+p+g++++eIlk+ey
  EHT98514.1  83 TGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLISVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEY 157
                 499**********************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1255.53
//
Query:       EHT98515.1  [L=97]
Description: hypothetical protein CKS_4895 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-22   79.6   0.5    1.7e-22   79.4   0.5    1.0  1  CRS1_YhbY  CRS1 / YhbY (CRM) domain


Domain annotation for each model (and alignments):
>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.5   9.5e-27   1.7e-22       1      84 []       3      86 ..       3      86 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 9.5e-27
   CRS1_YhbY  1 LtekelrrLrhlairlkpkvkiGkaGvtkevvdeiheklkteelvkvkcegppalnmkrmaeiLeektgglviqrsgtsivLYR 84
                L++k++++L++la+ lkp+v++G++G+t++v++ei+ +l ++el+kvk+   + ++++ +++ + ++tg++ +q +g+++vLYR
  EHT98515.1  3 LSTKQKQHLKSLAHPLKPVVMLGGNGLTEGVLAEIEHALGHHELIKVKVASEDRETRQLIVDAIVRETGAVNVQLIGKTLVLYR 86
                6789*********************************************7778888***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 798.70
//
Query:       EHT98516.1  [L=209]
Description: 23S rRNA U2552 ribose 2'-O-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-60  203.9   0.0    2.5e-60  203.6   0.0    1.1  1  FtsJ             FtsJ-like methyltransferase
     0.0032   18.1   0.1       0.15   12.7   0.1    2.7  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.024   14.3   0.0    1.7  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
       0.03   14.1   0.0       0.27   11.0   0.0    2.1  1  Methyltransf_23  Methyltransferase domain
      0.088   10.0   0.0        0.1    9.8   0.0    1.0  1  Reovirus_L2      Reovirus core-spike protein lambda-2 (L2)
      0.097   12.5   0.0        1.4    8.7   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
       0.19   11.0   0.2       0.56    9.5   0.0    1.8  3  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6   0.0   9.8e-64   2.5e-60       1     176 [.      31     206 ..      31     207 .. 0.99

  Alignments for each domain:
  == domain 1  score: 203.6 bits;  conditional E-value: 9.8e-64
                 CCCCHHHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS CS
        FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdv 99 
                 +rsR+++KL ei++  klfkpg+tvvDlgaaPGgwsq+++q++g kg+v+a+D+ pm+p+ gv ++qgd++++++i++++e ++++kv++v+sD+ap++
  EHT98516.1  31 LRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIGSKGRVIACDILPMDPIVGVDFLQGDFREESVINALLERVGDQKVQVVMSDMAPNM 129
                 59************************************************************************************************* PP

                 -CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEE CS
        FtsJ 100 sgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrg 176
                 sg+ ++d  +++ L++ ale++ ++l+pgg+fv+k+f+g+ ++++l++++++F kv+++kP +srs+s+e+++v++g
  EHT98516.1 130 SGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLREIRSLFTKVKIRKPDASRSRSREVYIVATG 206
                 **************************************************************************998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     6e-05      0.15       1      31 [.      55      86 ..      55     159 .. 0.81
   2 ?    3.6   0.0     0.044   1.1e+02      13      68 ..     107     164 ..     104     186 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
                     EEEET-TTSHHHHHHHCTST.SSEEEEEESSH CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrlg.kakvtgvDise 31
                     v+dlG+ +G +++++ +++g k++v+++Di +
       EHT98516.1 55 VVDLGAAPGGWSQYVVQQIGsKGRVIACDILP 86
                     89*****************779*******976 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.044
                      HHHHCTST..SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEE CS
  Methyltransf_25  13 lalakrlg..kakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlv 68 
                       al++r+g  k +v++ D++++m  + +  + ++ + ve+    ++d+  + gsf + 
       EHT98516.1 107 NALLERVGdqKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVK 164
                      5677777445899999999999987766666666566666666666666666666555 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.5e-06     0.024       9      41 ..      52      84 ..      48     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.5e-06
                     T-EEEESS-TTSHHHHHHHHHTTTTSEEEEEES CS
  Methyltr_RsmB-F  9 eetilDlcaaPGgKTthiaelmknkgtvvAvda 41
                     + t++Dl aaPGg   ++ + + +kg+v+A d+
       EHT98516.1 52 GMTVVDLGAAPGGWSQYVVQQIGSKGRVIACDI 84
                     5689**************************997 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.27      21     121 ..      50     167 ..      14     197 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  Methyltransf_23  21 raggrvLdiGcGtGillevl.rengf..svtgvDlspeaveiae....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp........ 99 
                      ++g+ v+d+G++ G ++++  ++ g    v++ D+ p+  +i+     + ++ + +  ++  +++ ++k +++ + +  +    p+        
       EHT98516.1  50 KPGMTVVDLGAAPGGWSQYVvQQIGSkgRVIACDILPM-DPIVGvdflQGDFREESVINALLERVGDQKVQVVMSDMAPNMSGTPAvdiprsmy 142
                      6778****************555566567777777664.4443122221111111111111333355566665555555555555555556666 PP

  Methyltransf_23 100 ...ellrqiatllkpgGylllsepl 121
                          +l + +++l+pgG +++ ++ 
       EHT98516.1 143 lveLALEMCRDILAPGGSFVVKVFQ 167
                      6666677777777777777777764 PP

>> Reovirus_L2  Reovirus core-spike protein lambda-2 (L2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0     4e-05       0.1     575     662 ..     119     208 ..     102     209 .] 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 4e-05
  Reovirus_L2 575 glvyadldqveda..gtdlsaanraalallgtalqmttaGGvavlkvnfPtrevWtqifnkyatnattlhlvkPivv..nssevflvlsGrq 662
                  ++v +d+     +    d++ +  +++  l+ + ++ ++GG++v+kv f    + +++  ++ +  t +++ kP      s ev++v++Gr+
   EHT98516.1 119 QVVMSDMAPNMSGtpAVDIPRSMYLVELALEMCRDILAPGGSFVVKV-FQGDGFDEYLR-EIRSLFTKVKIRKPDASrsRSREVYIVATGRK 208
                  666666655544411469999*************************9.88999988885.688899********88621568********96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00056       1.4       3      36 ..      51      84 ..      49     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00056
  Methyltransf_31  3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDi 36
                      g++v+DlG++ G  +    +++g+k++v+  Di
       EHT98516.1 51 PGMTVVDLGAAPGGWSQYVVQQIGSKGRVIACDI 84
                     6899***********************9888887 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00022      0.56      46      82 ..      50      86 ..      32      95 .. 0.88
   2 ?   -3.2   0.0       1.7   4.4e+03      68      84 ..     112     129 ..     104     131 .. 0.60
   3 ?   -2.7   0.0       1.2   3.1e+03     135     151 ..     147     163 ..     142     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
                     --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-H CS
  Ubie_methyltran 46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDine 82
                     k+g +v+D+ +  g ++  + +++g+kg+v+ +Di +
       EHT98516.1 50 KPGMTVVDLGAAPGGWSQYVVQQIGSKGRVIACDILP 86
                     7899******************************965 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                      HHH.HHHEEEEEES-HHH CS
  Ubie_methyltran  68 svg.ekgkvvvlDinenm 84 
                       vg +k +vv+ D+ +nm
       EHT98516.1 112 RVGdQKVQVVMSDMAPNM 129
                      333144577777777776 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.2
                      HHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvv 151
                      aL+  + +l pGG +vv
       EHT98516.1 147 ALEMCRDILAPGGSFVV 163
                      5667777999***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1567.16
//
Query:       EHT98517.1  [L=642]
Description: subunit of integral membrane ATP-dependent zinc metallopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-73  246.9   0.4    2.5e-73  246.0   0.4    1.4  1  Peptidase_M41    Peptidase family M41
    2.3e-46  157.5   0.0    6.9e-46  156.0   0.0    1.9  1  AAA              ATPase family associated with various cellul
    6.6e-17   61.8   0.2    6.6e-17   61.8   0.2    1.9  2  FtsH_ext         FtsH Extracellular
    1.7e-11   43.7   0.1    3.6e-11   42.7   0.1    1.5  1  AAA_lid_3        AAA+ lid domain
    3.2e-06   27.2   0.0    1.5e-05   25.0   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    6.7e-06   25.5   0.0    1.2e-05   24.7   0.0    1.5  1  TIP49            TIP49 P-loop domain
     0.0002   21.1   0.0    0.00099   18.9   0.0    2.1  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0019   18.4   0.0     0.0047   17.1   0.0    1.7  1  AAA_33           AAA domain
      0.002   18.5   0.9      0.048   14.0   0.1    2.6  2  AAA_16           AAA ATPase domain
     0.0033   17.6   0.2      0.017   15.2   0.0    2.4  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0034   17.1   0.0     0.0088   15.8   0.0    1.7  1  IstB_IS21        IstB-like ATP binding protein
     0.0039   16.6   0.2     0.0095   15.3   0.2    1.6  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0074   16.7   0.1       0.02   15.3   0.1    1.7  1  CSTF2_hinge      Hinge domain of cleavage stimulation factor 
     0.0082   16.4   0.1        0.2   11.9   0.1    2.5  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.026   15.0   0.3       0.23   12.0   0.1    2.4  2  ABC_tran         ABC transporter
       0.05   12.9   0.1       0.12   11.6   0.1    1.6  1  Zeta_toxin       Zeta toxin
      0.052   13.2   0.0       0.29   10.8   0.0    2.2  1  Sigma54_activat  Sigma-54 interaction domain
      0.076   12.5   0.2       0.22   11.0   0.2    1.8  1  AAA_7            P-loop containing dynein motor region
        0.1   12.3   0.1       0.42   10.3   0.0    2.1  2  AAA_24           AAA domain
       0.11   11.9   0.3       0.24   10.8   0.3    1.5  1  PhoH             PhoH-like protein
       0.11   12.9   0.0       0.36   11.2   0.0    1.9  1  AAA_17           AAA domain
       0.12   12.5   0.0       0.35   11.0   0.0    1.7  1  Sigma54_activ_2  Sigma-54 interaction domain
       0.14   12.2   0.0       0.37   10.8   0.0    1.7  1  AAA_14           AAA domain
       0.14   11.0   0.0       0.25   10.2   0.0    1.3  1  AAA_PrkA         PrkA AAA domain
       0.15   12.3   0.1          7    6.9   0.0    2.6  2  ParB_C           Centromere-binding protein ParB C-terminal
       0.15   12.3   0.0       0.37   11.0   0.0    1.7  1  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   0.4   3.6e-76   2.5e-73       1     190 [.     401     591 ..     401     592 .. 0.98

  Alignments for each domain:
  == domain 1  score: 246.0 bits;  conditional E-value: 3.6e-76
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHH..S-BGGGHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifg..evttGasnDleka 94 
                    +v++e++k+ +AyHEaGHa++g l++e+dpv+KvtiiPRg+alG+t++lPe d +s+++++l +++++l+GGr+aEe+i+g  +v+tGasnD++ a
     EHT98517.1 401 MVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGaeHVSTGASNDIKVA 496
                    689*******************************************************************************9************* PP

                    HHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  95 tkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    t++ar+mvt++G+s+klGp+ + ee++ evflg++++k+k++s+eta++id+evk+l++ +y+ra++il e+++ l+a+ +aL+++Et+da +i++
     EHT98517.1 497 TNLARNMVTQWGFSEKLGPLLYAEEDG-EVFLGRSVAKAKHMSDETARIIDQEVKHLIDTNYQRARQILGENMDILHAMKDALMKYETIDAPQIDD 591
                    ************************999.89**************************************************************9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   0.0   9.9e-49   6.9e-46       1     131 [.     188     320 ..     188     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 9.9e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl++GppGtGKTllaka+a e++v+f++isgs++++++vg +++++r++f++ak+ a p+i+fiDEida++++r    g+ ++e+e+++nq+l e+dg+
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRgagLGGGHDEREQTLNQMLVEMDGF 285
                 799*****************************************************9.****************9998899****************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + +e+ +ivi+atnrpd ldpallr gRfdr++ ++
  EHT98517.1 286 EGNEG-IIVIAATNRPDVLDPALLRpGRFDRQVVVG 320
                 **866.*************************99876 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.2   9.6e-20   6.6e-17       1     109 []       5      93 ..       5      93 .. 0.96
   2 ?   -2.4   0.1       8.6   5.9e+03       2      16 ..     106     120 ..     105     133 .. 0.65

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 9.6e-20
    FtsH_ext   1 illwlllallllllllslfggsgtgstkeisyseFledleqgnvekvvvqestisalirrptgdgvsttkkgnstttystptlgsvesleekLeealks 99 
                 ++lwl++a++l+ ++ s+  g +++ +++++ys+Fl +++q++v+++ +++ +i+            t+k++n++tty + +       ++kL ++l  
  EHT98517.1   5 LILWLVIAVVLMSVFQSF--GPSESNGRRVDYSTFLSEVNQDQVREARINGREIN-----------VTKKDSNKYTTYIPVN-------DPKLLDNLLT 83 
                 69****************..***********************************...........****************.......8999999999 PP

    FtsH_ext 100 kgvdvesspq 109
                 k+v+v+++p+
  EHT98517.1  84 KNVKVVGEPP 93 
                 9999998876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.6
    FtsH_ext   2 llwlllallllllll 16 
                 ++++ll++++ +++ 
  EHT98517.1 106 WFPMLLLIGVWIFFM 120
                 677777777766665 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.1   5.2e-14   3.6e-11       1      45 []     343     387 ..     343     387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.2e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 d+d + +A+ T+G+SGADla+l++eAal A r +   ++m +fe+
  EHT98517.1 343 DIDAAIIARGTPGFSGADLANLVNEAALFAARSNKRVVSMVEFEK 387
                 788888**********************************99986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.2e-08   1.5e-05       1     136 [.     187     309 ..     187     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.2e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vl+vGppGtgK+ la+ +a   + +++++ ++++ +    +g  ++           + ++a+   ++i+++DE++ + ++  + L    +er+  l+
  EHT98517.1 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV--------RD-MFEQAKkaAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276
                 59*******************************98765444444444........44.44455547899*************99999999999999988 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                 ++  +++  +    e + via++n++d     l+pal++
  EHT98517.1 277 QMLVEMDGFE--GNEGIIVIAATNRPD----VLDPALLR 309
                 8777776544..235599999999999....88888875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.8e-08   1.2e-05      25      89 ..     153     222 ..     134     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.8e-08
                 XXXXXXXXXXXXXXXXXXXXX....XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  25 glvGqkkareaagvivelike....kklaG...ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                  + G  +a+e +g +ve ++e    +kl+G   ++vL++Gp+gtGkt la ai+ e  ++vpf ++sgs++ 
  EHT98517.1 153 DVAGCDEAKEEVGELVEYLREpsrfQKLGGkipKGVLMVGPPGTGKTLLAKAIAGE--AKVPFFTISGSDFV 222
                 56677888888888888887655556888844458*******************98..57*********875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.4e-06   0.00099      34      71 ..     186     224 ..     151     261 .. 0.71
   2 ?   -2.0   0.0       3.8   2.6e+03      35      56 ..     347     368 ..     320     394 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgP.vlek 71 
                   vl++GpPG Gkt lak ia e +v + + sg   +e 
  EHT98517.1 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSdFVEM 224
                 569***********************9988888623443 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.8
      RuvB_N  35 hvllyGpPGlGkttlakiiake 56 
                  ++  G PG+  + la+++ + 
  EHT98517.1 347 AIIARGTPGFSGADLANLVNEA 368
                 4667899999999999998764 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.8e-06    0.0047       2      39 ..     188     227 ..     188     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.8e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 vl+vG+pG+GK+ la+ ++ + +  ++++s  ++ ++ +g
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAGEAKvpFFTISGSDFVEMFVG 227
                 79****************9998888888888776665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1     7e-05     0.048      12      49 ..     167     210 ..     161     228 .. 0.71
   2 ?    2.0   0.0      0.35   2.4e+02     123     147 ..     233     256 ..     228     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7e-05
      AAA_16  12 Llsalervrsgrp......elvllsGesGvGKsslvrellrale 49 
                 L ++l+  ++ +         vl +G++G+GK+ l+++++ +++
  EHT98517.1 167 LVEYLREPSRFQKlggkipKGVLMVGPPGTGKTLLAKAIAGEAK 210
                 555555444444444555699***************99986655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.35
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 ++++++++++ + p ++++D+++ +
  EHT98517.1 233 VRDMFEQAKK-AAPCIIFIDEIDAV 256
                 5667788888.889*******9954 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-05     0.017       6      83 ..     188     259 ..     185     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.....EEEEETGGG---- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.....ivllDEidKihpk 83 
                 +l++gp g+Gkt+laka+a   +v    ++ ++  s++ e   +   v     a+     +e+       i+++DEid + ++
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSDFVE---MFVGVG----ASRVRDMFEQAKkaapcIIFIDEIDAVGRQ 259
                 6899******************98....***********9...222232....22222222222223467********99885 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-05    0.0088      49      72 ..     187     210 ..     183     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveav 72 
                 +++++Gp+G+GK+ la a++ ea 
  EHT98517.1 187 GVLMVGPPGTGKTLLAKAIAGEAK 210
                 689****************98875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.4e-05    0.0095      25      43 ..     188     206 ..     183     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l+vGppG+GKt+lak+++
    EHT98517.1 188 VLMVGPPGTGKTLLAKAIA 206
                   89**************986 PP

>> CSTF2_hinge  Hinge domain of cleavage stimulation factor subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.9e-05      0.02      36      80 ..     548     592 ..     536     593 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-05
  CSTF2_hinge  36 qlKalaqqnpsqarelLkqnpqLayAllqalllmglvdpdvvtkv 80 
                  ++K l+ +n ++ar++L +n ++ +A+  al+    +d   + ++
   EHT98517.1 548 EVKHLIDTNYQRARQILGENMDILHAMKDALMKYETIDAPQIDDL 592
                  69************************************9988765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00029       0.2       9      29 ..     189     209 ..     185     240 .. 0.79
   2 ?    1.8   0.0       0.4   2.7e+02      79     104 ..     234     257 ..     227     295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00029
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+l++ ++ ++
  EHT98517.1 189 LMVGPPGTGKTLLAKAIAGEA 209
                 569************998876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.4
      AAA_22  79 lealeqalraravielliiDEaqhlr 104
                 ++++eqa +a+    ++ iDE++ + 
  EHT98517.1 234 RDMFEQAKKAAP--CIIFIDEIDAVG 257
                 444444444443..6********984 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00033      0.23      14      36 ..     188     210 ..     180     221 .. 0.90
   2 ?   -0.6   0.0       2.5   1.7e+03      79     126 ..     428     502 ..     376     504 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00033
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 v +vG+ G+GK+ L+k++ag+ k
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAGEAK 210
                 679*****************976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.5
                 H............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT CS
                 x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkk 126
                 +                            +s++++e  +s+l    l+++++ ++++++S G    +++a  l+++
  EHT98517.1 428 HdpvhkvtiiprgralgvtfflpegdaisASRQKLESQISTLYGGRLAEEII-YGAEHVSTGASNDIKVATNLARN 502
                 1455555555556666666666666766667777888888888888888888.88899999999999999888765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00017      0.12      14      43 ..     183     210 ..     173     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerq 43 
                 + Pk +l++G pG GK+ la++++ e   +
  EHT98517.1 183 KIPKGVLMVGPPGTGKTLLAKAIAGEA--K 210
                 679********************9986..4 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00041      0.29      22      46 ..     185     209 ..     169     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
                      SS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheas 46 
                      +  vl++G  GtGK+lla+ai  + 
       EHT98517.1 185 PKGVLMVGPPGTGKTLLAKAIAGEA 209
                      5679****************97543 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00032      0.22      34      56 ..     186     208 ..     175     257 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
       AAA_7  34 kpvllvGptGtGKtviikdllkk 56 
                 k vl+vGp GtGKt+++k +  +
  EHT98517.1 186 KGVLMVGPPGTGKTLLAKAIAGE 208
                 789*************9987655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.5   5.2e+03     137     168 ..      59      90 ..      54      91 .. 0.63
   2 ?   10.3   0.0   0.00061      0.42       5      29 ..     188     213 ..     185     277 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.5
      AAA_24 137 edpegeakytrl.epklgkktanelkeevDlvl 168
                 ++++++ kyt++ + + +k   n+l++ v +v+
  EHT98517.1  59 TKKDSN-KYTTYiPVNDPKLLDNLLTKNVKVVG 90 
                 445555.55555055677777888888888876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00061
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfi 29 
                 +l++Gp+g+GKT lak +  +   + +
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIagE-AKVPF 213
                 7899************99742.33333 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00035      0.24      22      41 ..     188     207 ..     183     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 v ++Gp GtGKt+la a+a 
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAG 207
                 7899***********99985 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00053      0.36       1      51 [.     191     242 ..     191     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00053
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklpl 51 
                 +G+PG GK+ +++ ++ + ++++++  G+ + e+    g+++ rd ++++++
  EHT98517.1 191 VGPPGTGKTLLAKAIAGEAKVPFFTIsGSDFVEMFVGVGASRVRDMFEQAKK 242
                 7***************999888865435555577777777777777666555 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00051      0.35      24      90 ..     188     265 ..     178     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00051
                      EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H...........HHHHHH...TTTSEEEEEE-TT--HHHHHHHH CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleifvverlaklp...........ldlleq...akggtLylkdiadlskaeqkeLl 90 
                      v+++G++G+gk+l A++++ ++     +f  +++++              d++eq   a + ++++ +i+  +++  ++L 
       EHT98517.1 188 VLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFVemfvgvgasrvRDMFEQakkAAPCIIFIDEIDAVGRQRGAGLG 265
                      99****************976654...444445554333356777777799999944447889999999999988877775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00053      0.37       5      76 ..     188     256 ..     185     293 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00053
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla...dpekllelileklkeekktylflDEiqev 76 
                 ++++G+  +GKT l+k ++ e       ++ i+  d  + ++      +++ +++ +  k+    ++f+DEi  v
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSD--FVEMFvgvGASRVRDMFEQA-KKAAPCIIFIDEIDAV 256
                 7889**************98887...4455555554..43322111122455666664.4458899******987 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036      0.25      58     143 ..     150     239 ..     135     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
    AAA_PrkA  58 afeedffGleet...iekiveyfraaaqrleerkqi...lyllGPvggGksslverlkklleaapiyalegsPvfeePlhlipeelrkklee 143
                  f+ d+ G +e+   +  +vey+r+ ++  +   +i   ++++GP g+Gk+ l++++     ++p++++ gs   e  +++ ++++r+++e+
  EHT98517.1 150 TFA-DVAGCDEAkeeVGELVEYLREPSRFQKLGGKIpkgVLMVGPPGTGKTLLAKAIAGE-AKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 239
                 566.777877652226689*****9986444333332225689***********999754.567************9999999999999987 PP

>> ParB_C  Centromere-binding protein ParB C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0      0.01         7       3      27 ..     256     280 ..     254     282 .. 0.89
   2 ?    2.3   0.0      0.29     2e+02      21      37 ..     536     552 ..     531     554 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.01
      ParB_C   3 aaRvRaAflatrhleGdqtlSdfia 27 
                  +R R+A l  +h+e++qtl ++ +
  EHT98517.1 256 VGRQRGAGLGGGHDEREQTLNQMLV 280
                 5799****************99976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.29
      ParB_C  21 tlSdfiaaAvmaeVerl 37 
                  +Sd  a+ ++ eV++l
  EHT98517.1 536 HMSDETARIIDQEVKHL 552
                 69*************98 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00053      0.37       2      28 ..     188     215 ..     187     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
      AAA_28   2 ivitGgestGKTtlleaLa.argypvvp 28 
                 + ++G+++tGKT l++a+a + ++p ++
  EHT98517.1 188 VLMVGPPGTGKTLLAKAIAgEAKVPFFT 215
                 6789***************544777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 4486.39
//
Query:       EHT98518.1  [L=277]
Description: 7,8-dihydropteroate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-89  298.3   0.1    5.3e-89  298.1   0.1    1.0  1  Pterin_bind  Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.1   0.1   2.9e-93   5.3e-89       1     244 []      18     257 ..      18     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 298.1 bits;  conditional E-value: 2.9e-93
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHCTSEEEEE-S-HHHHHHHHHTTSEEEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdeadvpisiDttkaevaeaAlkagadivN 98 
                  mgilNvtpdsfsdggk+++l +al++ ++mv++GA+i+D+ggestrPga++v++eeelerv+pv+ea++++++v+is+Dt+ka+v+++A +aga+i+N
   EHT98518.1  18 MGILNVTPDSFSDGGKHNALVDALTHTNEMVNAGATIIDVGGESTRPGADEVSVEEELERVIPVVEAIAQRFEVWISVDTSKADVIREAASAGAHIIN 115
                  9************************************************************************************************* PP

                  ETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHTT CS
  Pterin_bind  99 dvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrldelreal 196
                  dv+ ++ +p  l  +a +g++v++mhm+g+p+tmq+ +  y+d+v ev++++ ++++++e+aG+++e++llDpg+gfgk+  hn+ell++l+++ +++
   EHT98518.1 116 DVRSLS-EPGALAAAAATGLPVCLMHMQGEPRTMQQAP-AYKDIVSEVDTYFVEQLARCEAAGIKKENLLLDPGFGFGKNLSHNYELLAHLSKF-HRF 210
                  ******.*******************************.*******************************************************.*** PP

                  SSEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 197 evpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                   +p+l+G+Srks++g+ll++g +++R +g++a++++aa++Ga+i+r h
   EHT98518.1 211 ALPLLVGMSRKSMIGQLLNVG-PSQRLTGSLACAVIAAMQGAHIIRAH 257
                  ****************99555.9***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2235.02
//
Query:       EHT98519.1  [L=444]
Description: phosphoglucosamine mutase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-46  155.5   0.0    1.3e-45  154.5   0.0    1.5  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    2.6e-32  111.4   0.1    5.2e-32  110.4   0.1    1.5  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.3e-19   70.7   0.0    2.8e-19   69.6   0.0    1.6  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.9e-15   56.8   1.1    5.3e-15   55.3   1.1    1.8  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0     3e-49   1.3e-45       1     133 [.       4     135 ..       4     138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 3e-49
                 CGGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE-- CS
   PGM_PMM_I   1 rqkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimita 99 
                 r++fgt+G+Rgkvge ++tp++v+klg+a++++l+++ + kk+++G+DtR+s+ +l++al aglaa+G+++ ++g++ptPa+++++r+++a+agi+i+a
  EHT98519.1   4 RKYFGTDGIRGKVGESPITPDFVLKLGWAAGKVLARH-GSKKIIIGKDTRISGYMLESALEAGLAAAGLSAAFTGPMPTPAIAYLTRTFRAEAGIVISA 101
                 579********************************96.************************************************************* PP

                 TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCC CS
   PGM_PMM_I 100 SHnppeyngiKvylsnGgpispeveekIeaiiek 133
                 SHnp ++ngiK+++++G +++++vee+Ie ++ek
  EHT98519.1 102 SHNPFDDNGIKFFSAEGTKLPDDVEEAIELEMEK 135
                 *****************************98876 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.1   1.2e-35   5.2e-32       1     107 [.     258     363 ..     258     368 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 1.2e-35
                  HHHHHHHHHHHHHHCH.CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee.klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleila 97 
                  dgdq+l+++a++ l++ +l+ g gvv+t+m++++le ++k+lgi++v++kvGd+yvle+m+e+g+ lG E+Sgh+i+ld+  t+DGi+a+l+vl ++ 
   EHT98519.1 258 DGDQILYIIAREGLRQgQLR-G-GVVGTLMSNMGLELALKQLGIPFVRAKVGDRYVLEKMQEKGWRLGAENSGHVILLDKIATGDGIVASLQVLTAMV 353
                  79***********9995554.5.5************************************************************************** PP

                  HHTS-HHHHH CS
  PGM_PMM_III  98 etgkslsell 107
                  ++++sl++l+
   EHT98519.1 354 RNHMSLHDLC 363
                  ********98 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   6.2e-23   2.8e-19       2     103 .]     157     254 ..     156     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 6.2e-23
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEEEEE CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgDaDRlgvvd 100
                 +Yie +k +++ + ++ sglk+v+d+++Ga+ +i++ +l+elg+ v+ +  +pd+   +ka   ++   l++l+e v +e+ad+gla DgD+DR+++vd
  EHT98519.1 157 RYIEFCKGTFP-SELSLSGLKIVVDCANGATYHIAPNVLRELGATVIAVGVQPDGMNINKACGATD---LRMLQERVLAEKADIGLAYDGDGDRIMMVD 251
                 69********8.7788999************************************99988776666...****************************** PP

                 TTE CS
  PGM_PMM_II 101 erG 103
                 + G
  EHT98519.1 252 HLG 254
                 865 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   1.1   1.2e-18   5.3e-15       1      73 [.     373     441 ..     373     442 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.2e-18
                 CCCCCHCC-TT..EECCCCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHHHHHH CS
  PGM_PMM_IV   1 linvrveekakvvaalaallkvasikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeevaell 73 
                 l+nvr++ + + + +++a+++v    +++k l+++Gr+l +R SGTepl+rv+vE+ ++ ++  la ++a+++
  EHT98519.1 373 LVNVRFAGEHD-PLESDAVKAV--AEDVEKALAGKGRVL-LRKSGTEPLIRVMVEGEDETQVTALANRIADAV 441
                 79******988.9*********..99*************.******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 4033.27
//
Query:       EHT98520.1  [L=111]
Description: preprotein translocase membrane subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-22   77.5  11.8    7.3e-22   77.2  11.8    1.1  1  SecG       Preprotein translocase SecG subunit
  ------ inclusion threshold ------
       0.14   12.0   0.6       0.23   11.3   0.0    1.7  2  PulG       Type II secretory pathway pseudopilin
        5.9    6.5   5.6         13    5.3   5.1    1.7  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> SecG  Preprotein translocase SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2  11.8   1.2e-25   7.3e-22       2      69 ..       5      72 ..       4      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.2e-25
                HHHHHHHHHHHHHHHHHHCHHCCSCCHHTT...SS-SS--SSCCCHHCCHHHHHHHHHHHHHHHHHHC CS
        SecG  2 llillvivsilLillvLlQsgkgaglsgafgggasdslfgsrgaekfLtkiTvilavlFfvlslvlal 69
                ll++++iv+i+L++l++lQ+gkga+++++fg+gas++lfgs+g+++f+t++T++la+lFfv+sl+l+ 
  EHT98520.1  5 LLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASGTLFGSTGSGNFMTRMTAVLATLFFVISLILGN 72
                89****************************6667889****************************985 PP

>> PulG  Type II secretory pathway pseudopilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.66   3.9e+03      13      14 ..      12      13 ..       3      28 .. 0.48
   2 ?   11.3   0.0   3.8e-05      0.23       9      31 ..      59      81 ..      54      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.66
        PulG 13 vt 14
                v 
  EHT98520.1 12 VA 13
                22 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.8e-05
        PulG  9 lallvtivslilsqlkqsrkkta 31
                la+l++++slil +l+ +++++ 
  EHT98520.1 59 LATLFFVISLILGNLNSNKTAKG 81
                89***************998765 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.1    0.0022        13     120     166 ..       9      55 ..       2      72 .. 0.76
   2 ?    0.8   0.2     0.055   3.3e+02     146     162 ..      58      74 ..      52     104 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0022
   CPP1-like 120 alllalglgasiyflnrKekklgravlltlvgLvvGlllGsllasll 166
                  l++a+gl+  i++++ K   +g +++ +  g ++G + ++ +++ +
  EHT98520.1   9 FLIVAIGLVGLIMLQQGKGADMGASFGAGASGTLFGSTGSGNFMTRM 55 
                 589************************99988777766555555444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.055
   CPP1-like 146 lltlvgLvvGlllGsll 162
                 +l+ +++v++l+lG+l 
  EHT98520.1  58 VLATLFFVISLILGNLN 74 
                 45666777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 967.10
//
Query:       EHT98521.1  [L=150]
Description: 30S ribosomal subunit maturation factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-28   97.5   0.2    8.7e-28   96.5   0.2    1.5  1  DUF150    RimP N-terminal domain
    3.8e-21   75.0   0.0    5.7e-21   74.4   0.0    1.3  1  DUF150_C  RimP C-terminal SH3 domain


Domain annotation for each model (and alignments):
>> DUF150  RimP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.2   9.7e-32   8.7e-28       2      73 .]      12      82 ..      11      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 9.7e-32
      DUF150  2 iepvveslglelvdvelskegrgrvlriyidkdggvtlddcekvSraisalLdvedpieeeYtLEVsSPGld 73
                +   ve+lg+elv++e+++ gr ++lriyid+++g+++ddc++vS+++sa++dvedpi+  Y+LEVsSPGld
  EHT98521.1 12 VSAPVEALGYELVGIEFVR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVMDVEDPITVPYHLEVSSPGLD 82
                67789************99.88************************************************98 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   6.4e-25   5.7e-21       1      70 []      85     150 .]      85     150 .] 0.99

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 6.4e-25
    DUF150_C   1 LktaedFarflGelVkvklklpvegrkkftGkivevdeetitlevdgkkrkkettipladidkArlvpef 70 
                 L+tae++arf+G +V ++l+++v++r+k++G+i++v++e+it+ v+g+    +  + l++i+kA+lvp+f
  EHT98521.1  85 LFTAEHYARFTGDEVSLVLRMAVQNRRKWQGIIKSVEGEMITVNVEGN----DEVFALSNIQKANLVPHF 150
                 89**********************************************....****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 1424.73
//
Query:       EHT98522.1  [L=495]
Description: transcription termination/antitermination L factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-37  127.5   6.8    9.9e-37  126.0   6.8    1.8  1  NusA_N    NusA N-terminal domain
    9.4e-30  102.5   2.4    8.7e-28   96.2   0.2    3.1  3  KH_5      NusA-like KH domain
      2e-17   63.5   2.8    5.4e-11   42.9   0.2    3.1  3  HHH_5     Helix-hairpin-helix domain
    3.3e-05   24.1   0.1    0.00013   22.2   0.1    2.1  1  S1        S1 RNA binding domain
     0.0037   17.1   1.6      0.033   14.0   0.0    3.2  3  KH_2      KH domain
     0.0095   16.2   0.2          7    6.9   0.0    2.7  2  DUF4332   Domain of unknown function (DUF4332)
  ------ inclusion threshold ------
      0.037   13.9   0.1        0.3   11.0   0.0    2.6  2  KH_4      KH domain
      0.088   13.1   0.1        7.2    6.9   0.0    3.5  2  HHH_3     Helix-hairpin-helix motif
       0.16   12.1   4.5        1.9    8.6   0.2    3.1  3  HHH_2     Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> NusA_N  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   6.8     5e-40   9.9e-37       1     120 [.       4     123 ..       4     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 5e-40
                 .CHCCCCCCCCCS---HHHHHHHHHHHHHHHHHCCT-SSS-EEEEE-TTT--EEEEEEEEEESS-S-TTTEEEHHHHHCCSTT--TTBEEEEE----SS CS
      NusA_N   1 EllealeelakekgiskevviealeeaLakaykknygedenveveidretgeikvyskktVveevedpekeIsleeakkidpkikvGdtveeevtpkdf 99 
                 E+l ++e++++ek +++e+++eale+aLa+a+kk+y+++ +v+v+idr +g++++++++++ve+v++p +eI+l+ a+  d+++++Gd+ve ++++  f
  EHT98522.1   4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRRSGDFDTFRRWEIVEQVTQPTREITLDAARYEDESLNLGDYVEDQIESVTF 102
                 899*********************************99999************************************999**************99*** PP

                 CCHCHHHHHHHHHHHHHHHCC CS
      NusA_N 100 griaaqtakqvivqkireaer 120
                 +ri++qtakqvivqk+reaer
  EHT98522.1 103 DRITTQTAKQVIVQKVREAER 123
                 ********************9 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.5     3e+03      25      43 ..     133     151 ..     125     162 .. 0.87
   2 !   96.2   0.2   4.4e-31   8.7e-28       1      68 [.     230     297 ..     230     298 .. 0.98
   3 ?    4.7   0.0     0.016        31       4      31 ..     304     326 ..     301     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.5
        KH_5  25 kkGsrikavsseLkgekid 43 
                 ++G++i  v+++ +  +i 
  EHT98522.1 133 QEGEIITGVVKKVNRDNIS 151
                 7899999999999988875 PP

  == domain 2  score: 96.2 bits;  conditional E-value: 4.4e-31
        KH_5   1 aGertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseDlaefianalsPaevlsVk 68 
                 +G+r+k+aVk +++++dpvGa+vg++G+r++avsseL ge+id+v w++++a+f+ na++Pa+v s+ 
  EHT98522.1 230 PGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297
                 79**************************************************************9985 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.016
        KH_5   4 rtkvaVkshnpnvdpvGaivgkkGsrik 31 
                  + +aV+++n     +++++g++G++++
  EHT98522.1 304 TMDIAVEAGN-----LAQAIGRNGQNVR 326
                 5679******.....***********98 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.9   1.6e+04      24      33 ..     339     348 ..     335     362 .. 0.65
   2 !   19.7   0.1   4.9e-07   0.00098      12      56 ..     367     411 ..     364     412 .. 0.92
   3 !   42.9   0.2   2.7e-14   5.4e-11       2      56 ..     432     486 ..     431     487 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.9
                 -SHHHHHHS- CS
       HHH_5  24 esvedlaaad 33 
                  +v+dl a+ 
  EHT98522.1 339 MTVDDLQAKH 348
                 6899996653 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.9e-07
                 HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5  12 pktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                 ++ A  l++ G++s+e+la   ++eL +i G+ ++t e + + +k
  EHT98522.1 367 EEFATILVEEGFSSLEELAYVPINELLEIDGLDEETIEALRERAK 411
                 56688899********************************99998 PP

  == domain 3  score: 42.9 bits;  conditional E-value: 2.7e-14
                 HHHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   2 eeLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                 e+Ll ++G+ +++A +l+s+G++++edla++ v++L++i G+  ++A  +i++++
  EHT98522.1 432 EDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLTDEQAGALIMAAR 486
                 89***************************************************98 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   6.5e-08   0.00013       3      72 ..     133     195 ..     131     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.5e-08
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriil 72 
                 ++ge+++G+V++v+++++  +lgn++e+ + ++++        p e +++Gd+++ ++  v+ ++r+++l
  EHT98522.1 133 QEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRIRGVLYAVRPEARGAQL 195
                 79********************************99.......779999999999999999998888876 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       1.6   3.1e+03      10      39 ..      97     126 ..      91     127 .. 0.47
   2 ?   -0.6   0.1       0.6   1.2e+03      37      55 ..     249     267 ..     222     272 .. 0.83
   3 !   14.0   0.0   1.6e-05     0.033      12      55 ..     290     333 ..     281     340 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
                 TECETEEEEEEECCSCEEEE.EEEESCHHHH CS
        KH_2  10 ikkagvskveIertanrvii.viresqpgiv 39 
                 i++ + +++  + ta++vi+  +re++ ++v
  EHT98522.1  97 IESVTFDRITTQ-TAKQVIVqKVREAERAMV 126
                 444444444442.333333325666666665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.6
                 HHHHTGGGHHHHHHHHHHH CS
        KH_2  37 givIGkgGsnikkigkelr 55 
                 g  +G +G++++++ +el+
  EHT98522.1 249 GACVGMRGARVQAVSSELG 267
                 6679999999999999886 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.6e-05
                 CETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHH CS
        KH_2  12 kagvskveIertanrviiviresqpgivIGkgGsnikkigkelr 55 
                  a+v+++++++ ++   i + +++ + +IG++G+n++   +  +
  EHT98522.1 290 PADVASIVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG 333
                 46699******99***********************99888766 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0035         7      56      89 ..     359     393 ..     351     400 .. 0.85
   2 !    6.0   0.2    0.0067        13      51      89 ..     430     468 ..     401     479 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
     DUF4332  56 a.rikgigeeyaeLLeaaGvdsvaeLaqrnpanLh 89 
                 + + ++i ee a +L++ G +s +eLa  + ++L 
  EHT98522.1 359 FtKHLDIDEEFATILVEEGFSSLEELAYVPINELL 393
                 437899*********************88777775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0067
     DUF4332  51 nlAdLarikgigeeyaeLLeaaGvdsvaeLaqrnpanLh 89 
                  + dL + +g+ ++ a  L   Gv++ ++La++ +++L+
  EHT98522.1 430 PAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLT 468
                 556899999999999999999999999999999999986 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.3   6.6e+03      14      22 ..      39      47 ..      25      54 .. 0.48
   2 ?   11.0   0.0   0.00015       0.3      20      51 ..     293     325 ..     281     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
        KH_4 14 dpeevevte 22
                +++e++v++
  EHT98522.1 39 YEQEIDVRV 47
                222333333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
        KH_4  20 vtee.eeeeeveielnvegedlGrvIGkrGrtl 51 
                 v     +e++++++++ve  +l+  IG++G+++
  EHT98522.1 293 VASIvVDEDNHTMDIAVEAGNLAQAIGRNGQNV 325
                 3333356789*********************86 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0036       7.2      41      62 ..     387     408 ..     378     411 .. 0.88
   2 ?    1.0   0.0      0.26   5.2e+02      46      46 ..     459     459 ..     427     481 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0036
       HHH_3  41 ksreeLlkvkglgpktfeqlag 62 
                   ++eLl++ gl+++t+e l++
  EHT98522.1 387 VPINELLEIDGLDEETIEALRE 408
                 5689**************9986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
       HHH_3  46 L 46 
                 L
  EHT98522.1 459 L 459
                 1 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.4   4.8e+03      39      47 ..     212     220 ..     211     222 .. 0.86
   2 ?    8.6   0.2   0.00096       1.9      14      47 ..     368     402 ..     364     413 .. 0.82
   3 ?    4.1   0.1     0.026        51      25      50 ..     455     480 ..     442     487 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.4
       HHH_2  39 evddiGeei 47 
                 ev++iGee+
  EHT98522.1 212 EVPEIGEEV 220
                 899***997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00096
       HHH_2  14 ktAklLakr.FksldaLkkasleeLlevddiGeei 47 
                 + A +L+++ F sl++L+   ++eLle+d+  ee+
  EHT98522.1 368 EFATILVEEgFSSLEELAYVPINELLEIDGLDEET 402
                 5677777655*******************987765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.026
       HHH_2  25 sldaLkkasleeLlevddiGeeiAqs 50 
                 +l+ L++  +++L+ +++  +e A +
  EHT98522.1 455 TLEDLAEQGVDDLTDIEGLTDEQAGA 480
                 89****************99998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4042.56
//
Query:       EHT98523.1  [L=894]
Description: translation initiation factor IF2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-37  126.8   1.2    1.3e-36  124.9   1.2    2.1  1  IF-2          Translation-initiation factor 2
      2e-33  115.6   1.8      2e-33  115.6   1.8    3.7  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    3.2e-23   81.3   5.8    1.8e-13   50.0   1.8    2.7  2  IF2_N         Translation initiation factor IF-2, N-terminal 
    1.2e-15   57.4   7.4    1.6e-15   57.1   5.4    2.4  2  IF2_assoc     Bacterial translation initiation factor IF-2 as
    8.9e-10   38.7   0.1    2.7e-09   37.1   0.1    1.9  1  MMR_HSR1      50S ribosome-binding GTPase
    1.6e-08   34.8   3.2    5.7e-06   26.6   0.3    3.3  2  GTP_EFTU_D2   Elongation factor Tu domain 2
    5.9e-06   26.0   0.0    1.9e-05   24.3   0.0    1.9  1  Ras           Ras family
    0.00019   20.9   0.0    0.00062   19.3   0.0    1.9  1  Arf           ADP-ribosylation factor family
    0.00031   20.7   3.0      0.079   12.9   0.0    3.6  3  RsgA_GTPase   RsgA GTPase
    0.00091   18.8   0.1     0.0026   17.3   0.1    1.9  1  FeoB_N        Ferrous iron transport protein B
     0.0026   17.2   0.0     0.0094   15.4   0.0    2.0  1  SRPRB         Signal recognition particle receptor beta subun
     0.0041   17.3   0.0       0.01   16.0   0.0    1.7  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0096   15.7   1.5       0.02   14.7   0.0    2.2  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
  ------ inclusion threshold ------
      0.064   13.3   0.9       0.29   11.2   0.0    2.5  3  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
        0.2   11.5   0.0        0.2   11.5   0.0    3.0  3  AAA_26        AAA domain


Domain annotation for each model (and alignments):
>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   1.2   1.1e-39   1.3e-36       1     105 []     678     783 ..     678     783 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 1.1e-39
                 CCCHHHCCCSCS.SCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHSTEEEEEESSSCTHHHHHCCCCCTSEEEEESSHH CS
        IF-2   1 leelfeeikeeg.kelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasnaiiigFnvkvskkakklaekegvkirlynvIY 98 
                 le++f+++ e + +eln+++kaDvqGs+eA++++L kl+++evkvk++ sgvG ite+D +la+asnaii+gFnv+++++a+++++ e+ ++r+y+vIY
  EHT98523.1 678 LENMFANMTEGEvSELNIVLKADVQGSVEAISDSLLKLSTDEVKVKIVGSGVGGITETDATLAAASNAIILGFNVRADASARRVIDAESLDLRYYSVIY 776
                 58999***97779*************************77*********************************************************** PP

                 HHHHHHH CS
        IF-2  99 kliddvk 105
                 +lid+vk
  EHT98523.1 777 NLIDEVK 783
                 *****97 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5      0.59   7.1e+02     109     150 ..     317     369 ..     309     391 .. 0.68
   2 !  115.6   1.8   1.6e-36     2e-33       5     190 ..     397     554 ..     393     557 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHTTTE...EEEEEESCGST........HHHHHHHHHHHHHHH CS
    GTP_EFTU 109 pqteevlrlalkegvp...iivfiNKmDrl........kaelkeiveevkqkl 150
                   t +v++la+k+ v+   +i ++ Km  +        +++ + ++ee+ +k+
  EHT98523.1 317 GETITVAELANKMAVKgslVIKAMMKMGAMatinqvidQETAQLVAEEMGHKV 369
                 6899************9988889999988855555554444444444444444 PP

  == domain 2  score: 115.6 bits;  conditional E-value: 1.6e-36
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEET CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvda 103
                  ++i+ghvDhGKt+L+d +     +i++                 ++ giT ++ a ++e  t++  i+++DtPGH+ F+    rg++++D+++lvv+a
  EHT98523.1 397 VVTIMGHVDHGKTSLLDYIRS--TKIAS----------------GEAGGITQHIGAYHVE--TDNGMITFLDTPGHAAFTAMRARGAQATDIVILVVAA 475
                 589***************992..23333................3578************..************************************* PP

                 TTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 104 veGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 ++Gv+pqt e +++a++ +vp++v++NK+D+++a+ +++++e+ q        + + +  g  e  +v +Sa++g g+++ll+a+  
  EHT98523.1 476 DDGVMPQTIEAIQHAKAAKVPVVVAVNKCDKPEADPDRVKNELTQYG-----IIPEEW-GG--ENMFVNVSAKSGTGIDDLLNAILL 554
                 *******************************************9554.....344443.33..468*****************9975 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   4.6e-11   5.5e-08       1      53 [.       1      51 [.       1      52 [. 0.95
   2 !   50.0   1.8   1.5e-16   1.8e-13       2      54 .]     318     368 ..     317     368 .. 0.98

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.6e-11
       IF2_N  1 mskirVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgi 53
                m  ++V+ LA e+++++ ++++++ +++Gi+ ks ++ +++ ++e ++ ++++
  EHT98523.1  1 MTDVTVKSLAAEIQTSVDRLVQQF-ADAGIP-KSENDAVTQHEKETLLSHLKH 51
                7899********************.88****.****************99986 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 1.5e-16
       IF2_N   2 skirVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgik 54 
                 ++i+V eLA+++ vk   vik ++k +G + +++++ +D+eta+l+aee+g+k
  EHT98523.1 318 ETITVAELANKMAVKGSLVIKAMMK-MGAM-ATINQVIDQETAQLVAEEMGHK 368
                 79*********************99.****.********************97 PP

>> IF2_assoc  Bacterial translation initiation factor IF-2 associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   5.4   1.3e-18   1.6e-15       2      38 ..      57      93 ..      56      94 .. 0.98
   2 ?   -2.6   0.0       5.8   6.9e+03       3       9 ..     368     374 ..     367     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.3e-18
   IF2_assoc  2 kklTLkRksvselrqsfshGrsKtVsVEVRKKRtyvk 38
                +klTL+Rk++s+l++++++G+sK+V++EVRKKRtyvk
  EHT98523.1 57 GKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTYVK 93
                79**********************************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.8
   IF2_assoc   3 klTLkRk 9  
                 k+TL+R 
  EHT98523.1 368 KVTLRRE 374
                 8****97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   2.3e-12   2.7e-09       2     114 .]     398     503 ..     397     503 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.3e-12
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 v i+G+   GK++L+  +  +k   ++  g T++i  ++v++++  i+++DtpG            +a    + +d+++lvv a  +++ p+  e  + 
  EHT98523.1 398 VTIMGHVDHGKTSLLDYIRSTKIASGEAGGITQHIGAYHVETDNGMITFLDTPG-HA----AFTAMRARG-AQATDIVILVVAAD-DGVMPQTIEAIQH 489
                 789*****************9********************9999*********.22....222333333.3347*******977.7799998888888 PP

                 HHHTTSEEEEEEES CS
    MMR_HSR1 101 leeakkplilvlnk 114
                  + ak p+++++nk
  EHT98523.1 490 AKAAKVPVVVAVNK 503
                 8889********98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0047       5.7       1      21 [.     583     603 ..     583     647 .. 0.84
   2 !   26.6   0.3   4.8e-09   5.7e-06       1      73 [.     814     881 ..     814     882 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0047
                  EEEEEEEEEESEEETTEEEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevri 21 
                  G va++ v +Gtl+kGd v  
   EHT98523.1 583 GPVATVLVREGTLNKGDIVLC 603
                  679**************9986 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 4.8e-09
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G +a++ v +G +k+   +r+l+ n +  +   ++  sl +f+ d+ e+++g  +G++v+   ++d ++vGd +
   EHT98523.1 814 GAIAGCMVTEGNIKRHNPIRVLRdNVVIYE---GELESLRRFKDDVNEVRNGMECGIGVKN--YND-VRVGDMI 881
                  789************************999...*************************997..***.9***976 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.6e-08   1.9e-05       3     158 ..     399     554 ..     397     558 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.6e-08
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrva 101
                  ++G    GKtsll  +++++   + e+  g+ +++   +v+  +  ++ +DT G   f+++r    + ++ ++lv + ++      + + +e i++ +
  EHT98523.1 399 TIMGHVDHGKTSLLD-YIRSTKIASGEAG-GITQHIGAYHVETDNGMITFLDTPGHAAFTAMRARGAQATDIVILVVAADDGV----MPQTIEAIQHAK 491
                 5899999*****985.6665544444433.46888899999999999999*************************98877754....557788999999 PP

                 TTTSEEEEEEETTTGGG..G-SS-HHHHHH..HHHHHT..SEEEEEBTTTTCTHHHHHHHHHH CS
         Ras 102 eenvpivLvGnKvDlee..kravsteegee..lakelg..lkfletSAktnenveeafeellr 158
                   +vp+v+  nK+D  e     v++e  +   + +e+g   +f+++SAk+ ++++++++++l 
  EHT98523.1 492 AAKVPVVVAVNKCDKPEadPDRVKNELTQYgiIPEEWGgeNMFVNVSAKSGTGIDDLLNAILL 554
                 999***********9886645666665553114588877789**************9998875 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.2e-07   0.00062      17     171 ..     398     552 ..     387     556 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.2e-07
                 EEEEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGC CS
         Arf  17 illlGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeee 112
                 + ++G    GKt +l  +++ ++++      T++    ++e+ n  +t+ D  G+     +  +  ++td vi vv + d   + ++ e     +++ +
  EHT98523.1 398 VTIMGHVDHGKTSLLDYIRSTKIASgeaGGITQHIGAYHVETDNGMITFLDTPGHAAFTAMRARGAQATDIVILVVAADD-GVMPQTIE----AIQHAK 491
                 557788888*********999999844345699****************************************9996655.45555443....468899 PP

                 CTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS....SSSSEEEEEEBTTTTBTHHHHHHHH CS
         Arf 113 lkevallvlaNKqDlpealseeelrellgleelk....gkrkleiqkcsavkgeglkeglewl 171
                  ++v+++v  NK D pea + + ++++l+ + +     g ++   +++sa +g+g+++ l+ +
  EHT98523.1 492 AAKVPVVVAVNKCDKPEA-DPDRVKNELTQYGIIpeewGGEN-MFVNVSAKSGTGIDDLLNAI 552
                 9***************98.56788888888887734433334.45578899999999888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.49   5.8e+02      64     121 ..      16      67 ..       6      83 .. 0.77
   2 ?    5.1   0.1     0.016        19      92     126 ..     388     421 ..     325     457 .. 0.66
   3 !   12.9   0.0   6.6e-05     0.079      16      97 ..     466     552 ..     452     561 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.49
                  HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallp 121
                  ++++l ++++++g++    +a t+++ e+l ++lk+      Gq G GK tL  + ++
   EHT98523.1  16 SVDRLVQQFADAGIPKSENDAVTQHEKETLLSHLKH------GQAGSGKLTLQRKTRS 67 
                  566777788888888888888888888888888886......99*****999877665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.016
                  HHHHHCTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  92 elkellkdktsvlvGqSGvGKStLinallpelelk 126
                  + +++ +  +++++G+   GK++L++ +++++ ++
   EHT98523.1 388 DAAQEARAPVVTIMGHVDHGKTSLLDYIRSTK-IA 421
                  445666778999****************9973.22 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 6.6e-05
                  --EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--..TTTHTTHHHHHHHC CS
  RsgA_GTPase  16 vdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.....eleelkeelealgyevllvs..aktkegleelkell 97 
                   d +++vv+++ + + +++++ ++ +a+++++++v+++nK+D  e +      el+++    e++g e ++v+  ak+++g+++l +++
   EHT98523.1 466 TDIVILVVAAD-DGVMPQTIE-AIQHAKAAKVPVVVAVNKCDKPEADPdrvknELTQYGIIPEEWGGENMFVNvsAKSGTGIDDLLNAI 552
                  35555666666.999999998.6899*****************9988776777777777888899987776551055667777776655 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.2e-06    0.0026       3     155 ..     398     551 ..     396     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.2e-06
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlql 101
                 v+++G  + Gkt+l++ +  +k   g   G+t      ++++++  ++++D PG  +++a+      a+d+++      +v  +d   + +++  +   
  EHT98523.1 398 VTIMGHVDHGKTSLLDYIRSTKIASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTAMRARGAQATDIVI------LVVAADDGVMPQTIEAIQHA 490
                 7899*************************************999***********999998877777766664......55556777899999999999 PP

                 HHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH.....T..S-EEEEBTTTTBTHHHHHHH CS
      FeoB_N 102 lelgvpvvlalnmideaekkgieidlkkLsekL.....g..vpvvktsakkkegieellka 155
                    +vpvv+a+n++d+ e++  ++ ++  +  +     g     v++sak+++gi++ll+a
  EHT98523.1 491 KAAKVPVVVAVNKCDKPEADPDRVKNELTQYGIipeewGgeNMFVNVSAKSGTGIDDLLNA 551
                 99*************9988877776655443322222232234677788888888877766 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.9e-06    0.0094       3      90 ..     395     482 ..     393     520 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.9e-06
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpk 90 
                 +p v ++G  d GKTsl+  + + ++ +  +    +   a++v ++++ ++t++D PGh  +         + + +  lv   D  + p+
  EHT98523.1 395 APVVTIMGHVDHGKTSLLDYIRSTKIASGEAGGitQHIGAYHV-ETDNGMITFLDTPGHAAFTAMRARG-AQATDIVILVVAADDGVMPQ 482
                 68899****************9998888777653344445555.888899*********9987644444.33333444444445555554 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.8e-06      0.01       2     120 .]     398     506 ..     397     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.8e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlk 100
                 v ++G    GKtsll+ + + k+ + e   i   +   +v      e+d    +  + + Dt G+  f +++    ++ +++ilv+ ++ +  + + ++
  EHT98523.1 398 VTIMGHVDHGKTSLLDYIRSTKIASGEAGGITQHIGAYHV------ETD----NGMITFLDTPGHAAFTAMRARGAQATDIVILVVAAD-DGVMPQTIE 485
                 5789999*********999999988876655555544433......223....235889***********************9999764.455667788 PP

                 HHHHH.CSSS-EEEEEE-TTT CS
         Roc 101 elkkv.agkspvilvgnkiDl 120
                  +++  a k pv++ +nk+D+
  EHT98523.1 486 AIQHAkAAKVPVVVAVNKCDK 506
                 8876526688999******95 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       5.1   6.1e+03       8      20 ..      52      64 ..      50      68 .. 0.86
   2 !   14.7   0.0   1.6e-05      0.02       4     140 ..     398     551 ..     396     553 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.1
   PduV-EutP  8 GkvgsGKttLtqa 20
                G+ gsGK tL ++
  EHT98523.1 52 GQAGSGKLTLQRK 64
                899*******987 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.6e-05
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkk....tqai.....efsdev...iDtPGeylenrklysalivt.saeadvialvqdate...eesvfppgfas 86 
                 + ++G+v+ GKt+L   ++  ++        tq i     e  + +   +DtPG         +a+++  +  +d++ lv++a++   ++++ + + a+
  EHT98523.1 398 VTIMGHVDHGKTSLLDYIRSTKIASGEaggiTQHIgayhvETDNGMitfLDTPGHA-----AFTAMRARgAQATDIVILVVAADDgvmPQTIEAIQHAK 491
                 678*****************998765433447876211114444442336999953.....33444444055568888888887622144455567777 PP

   PduV-EutP  87 vfnkeviGiitkidlaedeenieaveelLksaGa.......ekif.evsavekegieellky 140
                   + +v+  + k d++  e++ + v+++L++ G+       e++f +vsa + +gi++ll+ 
  EHT98523.1 492 AAKVPVVVAVNKCDKP--EADPDRVKNELTQYGIipeewggENMFvNVSAKSGTGIDDLLNA 551
                 8888999999999999..77777888888887753333333556437888888888888765 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8   4.6e+03      30      49 ..     310     329 ..     307     369 .. 0.69
   2 ?   11.2   0.0   0.00024      0.29      42     100 ..     480     552 ..     464     557 .. 0.74
   3 ?   -2.6   0.0       4.6   5.5e+03      36      71 ..     752     785 ..     749     799 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
  MMR_HSR1_Xtn  30 hnaevliredvtvDdlidvi 49 
                   +n +v+i e +tv +l + +
    EHT98523.1 310 VNRDVVIGETITVAELANKM 329
                   56778888888877776655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00024
  MMR_HSR1_Xtn  42 vDdlidvieg.nrvYipclyvlNKiDl..isleeldelare..............pnsvviSaekelnldeLkeki 100
                   + + i++i++ +   +p+++++NK+D+  ++ + +++   e              +  v +Sa++++++d+L+++i
    EHT98523.1 480 MPQTIEAIQHaKAAKVPVVVAVNKCDKpeADPDRVKN---EltqygiipeewggeNMFVNVSAKSGTGIDDLLNAI 552
                   5577889977466889**********95544444433...22335778888988456667************9988 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.6
  MMR_HSR1_Xtn  36 iredvtvDdlidviegnrvYipclyvlNKiDlisle 71 
                   +r d+++ ++id+ + +  Y  ++  +N iD+++ +
    EHT98523.1 752 VRADASARRVIDAESLDLRYYSVI--YNLIDEVKAA 785
                   677888888888887777777765..5778877665 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   3.4       7.7   9.2e+03      44      86 ..     160     202 ..      97     218 .. 0.73
   2 ?    0.1   0.1      0.51   6.1e+02      28     119 ..     255     352 ..     249     371 .. 0.58
   3 ?   11.5   0.0   0.00016       0.2     131     189 ..     469     525 ..     451     531 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.7
      AAA_26  44 ededselikellgldqtyelpeplalsaplspelaarqegedi 86 
                 +++ ++ ++++++ d+++ ++e+  l++ +++e+  ++e+ + 
  EHT98523.1 160 TNQPTDEVTKAAQSDKARREAEAAELKRKAEEEARRKLEEAAR 202
                 3555666777777777777777888877777766666665444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.51
      AAA_26  28 kgvkvgyfKPiqtgie...ededselikellgldqtyelpeplalsaplspelaarqeg....edidlekivkelekdadivvVEGagglgvpiteell 119
                 ++ +++  +P+ +g++   +++d+e ++  ++  +  ++++p al++ +++ ++a + +    e+i+++++     + +  +v+ ++ ++g   t +++
  EHT98523.1 255 RTRSAKAARPVKKGNKhseAKTDREEARAQVRGGKGGKHRKPSALQQGFNKPAQAVNRDvvigETITVAEL-ANKMAVKGSLVIKAMMKMGAMATINQV 352
                 55566666777766663323557777777888888888888888888887777665554222244444444.333444555666655555555444443 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00016
      AAA_26 131 vilVargglgtinqllltiealrqknvrvlGvilNkvrnpe.nvetlekksgipvlGvvP 189
                 vilV+++++g + q++ +i++++  +v+v+ v +Nk+ +pe + + +++   ++ +G++P
  EHT98523.1 469 VILVVAADDGVMPQTIEAIQHAKAAKVPVV-VAVNKCDKPEaDPDRVKNE--LTQYGIIP 525
                 89***********************99998.6778888885355555544..66667766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2692  (0.150148); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                       268  (0.0149478); expected 17.9 (0.001)
Passed Fwd filter:                        95  (0.00529868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.86u 0.37s 00:00:02.23 Elapsed: 00:00:00.54
# Mc/sec: 4968.84
//
Query:       EHT98524.1  [L=135]
Description: 30s ribosome binding factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-34  116.5   0.1    7.6e-34  116.3   0.1    1.1  1  RBFA        Ribosome-binding factor A
  ------ inclusion threshold ------
      0.033   13.6   0.0      0.046   13.2   0.0    1.1  1  DUF3047     Protein of unknown function (DUF3047)
       0.17    9.7   0.0       0.21    9.4   0.0    1.0  1  Herpes_U30  Herpes virus tegument protein U30


Domain annotation for each model (and alignments):
>> RBFA  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.1   1.3e-37   7.6e-34       1     104 [.       7     112 ..       7     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.3e-37
                 TCHHHHHHHHHHHHHHHHHCT-HCCTGHHCEEEEEEESTTSSEEEEEEEESS-..HHHHHHHHHHHHHTHHHHHHHHHHHC-SSSG-EEEEESSSTTTT CS
        RBFA   1 RqervaeliqrelseilqeelkdprlgklvtiteVkvsrDlskakVyvsvlgs..eeekeevlkaLkkaagflrrelakrlklrktPeLkFvlDesleq 97 
                 R +rv++++q+e++ ilq+e+kdprlg +vt+++V+vsrDl +akV+v++l++  ee+ ++ lkaLk+a+g++r+ l+k ++lr +PeL+F++D+sl +
  EHT98524.1   7 RPQRVSQELQKEIAMILQREIKDPRLGMMVTVSGVEVSRDLAYAKVFVTFLNDqdEEAVKNGLKALKEASGYIRTLLGKAMRLRIVPELTFFYDNSLIE 105
                 779***********************88************************85333777779************************************ PP

                 --XXXXX CS
        RBFA  98 akeiekl 104
                 ++++++l
  EHT98524.1 106 GMRMSNL 112
                 ****997 PP

>> DUF3047  Protein of unknown function (DUF3047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.7e-06     0.046      77     137 ..      49     128 ..      41     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.7e-06
     DUF3047  77 aariyvvfdddkdklslvertk.........kage............aLnYvWssslpkgtvvpnaytdrvrmivvesgtak 137
                  a+++v+f +d+d+  +++  k         +  +             L++ +++sl +g  ++n  t+ v+  v ++g++ 
  EHT98524.1  49 YAKVFVTFLNDQDEEAVKNGLKalkeasgyiR--TllgkamrlrivpELTFFYDNSLIEGMRMSNLVTNVVKKDVERRGPET 128
                 499**********9999999998875555552..0555588899999*********************99999998888876 PP

>> Herpes_U30  Herpes virus tegument protein U30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   3.5e-05      0.21     600     650 ..      47      97 ..      43     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 3.5e-05
  Herpes_U30 600 llYfqlveiyeqaedeeallnlldhikevvtaiaetvealeraaeaPeaev 650
                 l+Y+++   + + +deea+ n l+++ke+++ i++++    r    Pe+++
  EHT98524.1  47 LAYAKVFVTFLNDQDEEAVKNGLKALKEASGYIRTLLGKAMRLRIVPELTF 97 
                 89****999999*************************99999999999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1022.94
//
Query:       EHT98525.1  [L=314]
Description: tRNA U55 pseudouridine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-58  195.7   0.0    6.8e-58  195.3   0.0    1.2  1  TruB_N    TruB family pseudouridylate synthase (N terminal do
    1.3e-22   79.6   0.2    2.5e-22   78.8   0.2    1.5  1  TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
    2.5e-22   78.7   0.2    5.1e-22   77.7   0.2    1.6  1  TruB-C_2  Pseudouridine synthase II TruB, C-terminal


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   0.0   1.1e-61   6.8e-58       1     149 []      33     180 ..      33     180 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.3 bits;  conditional E-value: 1.1e-61
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE----------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvk 99 
                 kr+++a+++GhtG LDplatG+L++++geaTk+++yll++dK+Y++ +rlg++tdt Da+g+ +++ +  ++t+++l+++l++f+G+i+qvp+m+SA+k
  EHT98525.1  33 KRIFNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGERTDTSDADGNRVQT-RPVTFTQADLDTALDSFRGDIMQVPSMFSALK 130
                 89**************************************************************99.5899**************************** PP

                 ----------------------EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
      TruB_N 100 vnGkrlyelaregeeverkkrkvtiyelelleveepevelevecskGtYi 149
                 ++G++lye+areg+++er++r++t+y+l++++++ +e+ele++cskGtYi
  EHT98525.1 131 HQGRKLYEYAREGITIEREPRPITVYDLQFIRWQGSELELEIHCSKGTYI 180
                 *************************************************9 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.2   4.2e-26   2.5e-22       1      62 [.     181     247 ..     181     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4.2e-26
                 HHHHHHHHHHTTS-EEEEEEEEEEETTEGG-..B-HHHHHHHHHHHHT--H.......HHHHEEEGGGG CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpfdeedmvtledLedavllykedee.......LdrlllPlesa 62 
                 Rt++dD+Ge+LgcgAhv++LRR++v+ ++ e+mvtle+L+++++ ++   +       Ld+lllP++s 
  EHT98525.1 181 RTIIDDLGEKLGCGAHVIMLRRLQVARYPFERMVTLEQLQALQAEANA--SgddlalqLDPLLLPMDSP 247
                 9****************************************7774444..23367999*********95 PP

>> TruB-C_2  Pseudouridine synthase II TruB, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.2   8.6e-26   5.1e-22       1      58 []     252     309 ..     252     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 8.6e-26
    TruB-C_2   1 PeveLseesakrflqGQrvklaaglpaeglVRvy.deegrFlGvGeitddgvlaPkRLv 58 
                 P+v+Ls+++a++f+qGQ+v  a+++p++glVRv+ +e+++F+G++e+ ddg++aP+RLv
  EHT98525.1 252 PAVNLSADVAAYFKQGQPV-HASQAPDQGLVRVTeGETRKFIGMAEVADDGRIAPRRLV 309
                 9******************.569***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2328.61
//
Query:       EHT98526.1  [L=89]
Description: 30S ribosomal subunit protein S15 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-37  125.7   0.8    7.1e-37  125.5   0.8    1.0  1  Ribosomal_S15  Ribosomal protein S15
  ------ inclusion threshold ------
      0.053   13.7   0.1      0.067   13.4   0.1    1.2  1  Stirrup        Stirrup


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.8   7.9e-41   7.1e-37       1      81 []       8      88 ..       8      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 7.9e-41
                   HHHHHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCTST CS
  Ribosomal_S15  1 kkelikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdverYkklieklglr 81
                   k+e++++++r ++D Gs+evq+allt++I +l+ h++e+kkD+hsrrgLl++vs+Rrkll+YLkrkdv+rY +lie lglr
     EHT98526.1  8 KAEIVAKYGRGANDSGSTEVQVALLTAQISHLQGHFSEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYSSLIESLGLR 88
                   789****************************************************************************97 PP

>> Stirrup  Stirrup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.5e-06     0.067       6      79 .]       2      83 ..       1      83 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.5e-06
                ---HHHHHHHHHTTT-EEEEETTEEEEE.ETTEEEE-TTH....HHHS-EEHHHHHHHH...HHHHHHH--HHHHHHHHHHH CS
     Stirrup  6 tlsfedfkewaskygvefktngsqtlai.ikdekvslgqw....hrrnrvskavlvkml...rklyeatkdeevkrmlhlie 79
                +ls e+  e  +kyg      gs  + + +   ++s  q     h+++  s+  l++m+   rkl +  k ++v r   lie
  EHT98526.1  2 SLSVEAKAEIVAKYGRGANDSGSTEVQVaLLTAQISHLQGhfseHKKDHHSRRGLLRMVsqrRKLLDYLKRKDVARYSSLIE 83
                6888999999999*9999999998765524567788655412447899999999999976669**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 782.87
//
Query:       EHT98527.1  [L=709]
Description: polynucleotide phosphorylase/polyadenylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-42  144.3   0.0    3.9e-21   75.9   0.0    2.6  2  RNase_PH    3' exoribonuclease family, domain 1
    2.1e-26   92.2   1.8    5.9e-26   90.8   1.8    1.8  1  PNPase      Polyribonucleotide nucleotidyltransferase, RNA bi
    1.6e-23   82.5   1.4    4.1e-15   55.6   0.0    2.6  2  RNase_PH_C  3' exoribonuclease family, domain 2
    9.7e-22   77.1   3.5    9.7e-22   77.1   3.5    2.3  2  S1          S1 RNA binding domain
    1.5e-08   34.3   4.6    1.5e-08   34.3   2.5    2.3  2  KH_1        KH domain
    0.00017   21.6   0.1     0.0047   16.9   0.0    2.9  2  S1_2        S1 domain
     0.0012   18.7   4.0     0.0013   18.5   0.5    2.7  2  KH_2        KH domain


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0     2e-21   5.1e-18       5     132 .]      16     144 ..      13     144 .. 0.89
   2 !   75.9   0.0   1.5e-24   3.9e-21       2     132 .]     324     456 ..     323     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 2e-21
                 EEEEES.SSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC-C........S...HHHHHHHHHHHHHHCCTC-CCGCC CS
    RNase_PH   5 lsietg.vlsqanGSaylelGdtkvlasvtgpieerpseer.ddaegaldveveyapfasger.....rregrpsdeeielsrlleralrpsillekkp 96 
                 +++etg +++qa + ++++++dt v ++v g++++   ++  d+++  l+v+++   +a+g++     rregrps+ e+++srl++r +rp+++     
  EHT98527.1  16 VTLETGmMARQATAAVMVSMDDTAVFVTVVGQKKT---KPGqDFFP--LTVNYQERTYAAGRIpgsffRREGRPSEGETLISRLIDRPVRPLFPEGFV- 108
                 799***999************************98...44448999..**********************************************8877. PP

                 TCEEEEEEEEEECCC.S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  97 kstididitvlssdg.gslldalinaaslALadagip 132
                  +++++ +tv+s +    +  +++++as+ALa +g+p
  EHT98527.1 109 -NEVQVIATVVSVNPqVHPDIVAMIGASAALALSGLP 144
                 .5666666666654444999***************98 PP

  == domain 2  score: 75.9 bits;  conditional E-value: 1.5e-24
                 EEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CC....EEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCC CS
    RNase_PH   2 lRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddae....galdveveyapfasgerrregrpsdeeielsrlleralrpsillekkp 96 
                 +R l++ tgvl++ +GSa+++ G+t+ l++ t++++ ++++  d+      + +  +++++p++ ge+ + g p+++ei   rl +r ++++ +  +  
  EHT98527.1 324 IRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNL-DELMgertDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKVEDF 421
                 68899******************************8844433.43334555779**************999***********************97777 PP

                 TCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  97 kstididitvlssdggslldalinaaslALadagip 132
                  +t++++ ++++s+g s  +a++++aslAL+dag+p
  EHT98527.1 422 PYTVRVVSEITESNG-SSSMASVCGASLALMDAGVP 456
                 7**************.******************99 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   1.8   2.3e-29   5.9e-26       2      83 .]     242     320 ..     241     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 2.3e-29
                 HHHHHHTTTHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHHHHHHHHHHHHHHTS-TTTS-- CS
      PNPase   2 leekvaelaeerisealtiteKqeRyaaldeikekvveafaaeleeedeedekeikeifkalekkvvRsrildegvRiDGRe 83 
                 l  +va+lae+ris+a++it+Kq+Rya++d+ik+++++a++   +e++ +d++ei++i+++lek+vvR ril++++RiDGRe
  EHT98527.1 242 LISRVAALAEARISDAYRITDKQARYAQVDAIKDETIAALL---AEDESLDAAEIGDIVHSLEKTVVRTRILNGEPRIDGRE 320
                 6789*************************************...8899*********************************6 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.6e-18   4.1e-15       1      66 [.     147     210 ..     147     211 .. 0.94
   2 !   25.4   0.3   4.1e-09     1e-05       2      65 ..     460     527 ..     459     529 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.6e-18
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAkk 66 
                 +p++a +vg+++dq+vl+pt++E  l +++l+l+vagt++  +lm e ++  l+ee++l a+ ++++
  EHT98527.1 147 GPIGAARVGYINDQYVLNPTADE--LKTSRLDLVVAGTQNA-VLMVESEAEiLSEEQMLGAVVFGHD 210
                 599********************..****************.8888888888*********999987 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 4.1e-09
                 --EEEEEEEETTE....EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC..EEHHHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkvddq....fvlDptkeEedlsegdltlavagtkevvtlmkeggsq..ldeetlleaielAk 65 
                  v+++++g+v ++    ++ D   +E++l+  d+++ vag+++ +t ++++ +   +++e +  a+  Ak
  EHT98527.1 460 SVAGIAMGLVKEDdkfvVLSDILGDEDHLG--DMDFKVAGSRDGITALQMDIKIegITREIMQVALNQAK 527
                 599*******7555688888******9987..********************999**********99998 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.5   6.5e+03      41      64 ..     578     601 ..     558     604 .. 0.75
   2 !   77.1   3.5   3.8e-25   9.7e-22       2      75 .]     619     690 ..     618     690 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.5
                 CEESCHHHCEETTEEEEEEEEEEE CS
          S1  41 arvedpdevlkvGdevkvkvlkvd 64 
                 a +e+ ++++ ++d   vk+  +d
  EHT98527.1 578 ALTEETGTTIEIEDDGTVKIAATD 601
                 567888899999999999987766 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 3.8e-25
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  e+g +++G+Vt+++++GafV +g+g eg+v++s+++++ rve+ ++ l++G+ev+vkv +vd++ r ++lsik
  EHT98527.1 619 IEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADK-RVEKVTDYLQMGQEVPVKVMEVDRQGR-VRLSIK 690
                 689************************************.*************************88.****97 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   2.5   5.8e-12   1.5e-08       2      66 .]     556     614 ..     555     614 .. 0.87
   2 ?   -2.4   0.0       1.7   4.4e+03      25      63 ..     632     665 ..     628     667 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 5.8e-12
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisG.speavekAkeliee 66 
                 ++i++ s+++  +IGkgGs+I+ + eetg+ I ++       d+ +v i   +  + ++A+++iee
  EHT98527.1 556 YTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIE-------DDGTVKIAAtDGLKAKEAIRRIEE 614
                 689******************************76.......356999998777788888888875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                 HHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHH CS
        KH_1  25 IreetgakIkvpksedegsderevtisG.speavekAkel 63 
                 I +  ga + +  +     +e  v+is    ++vek  + 
  EHT98527.1 632 IVD-FGAFVAIG-GG----KEGLVHISQiADKRVEKVTDY 665
                 555.77888854.32....678999998777778887765 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.18   4.7e+02       8      44 ..     259     297 ..     257     298 .. 0.87
   2 !   16.9   0.0   1.8e-06    0.0047       1      36 [.     621     656 ..     621     676 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.18
        S1_2   8 kvlretdfgyfLq..kdesgevlLpkkevpeeleiGdev 44 
                 ++++++ +++ ++  kde    lL + e  +  eiGd v
  EHT98527.1 259 RITDKQARYAQVDaiKDETIAALLAEDESLDAAEIGDIV 297
                 6889999999998778888999**************977 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevpe 36 
                 +G+i + kv+r+ dfg+f++ ++++e l++ +++ +
  EHT98527.1 621 VGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656
                 69*******************999*******99974 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.5     5e-07    0.0013      27      68 ..     556     597 ..     539     607 .. 0.86
   2 ?   -0.2   0.2      0.35     9e+02      39      75 ..     640     681 ..     638     693 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5e-07
                 EEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEE CS
        KH_2  27 viiviresqpgivIGkgGsnikkigkelrkdieklegkkVkl 68 
                  +i i + + + vIGkgGs i+++++e +  ie+  ++ Vk+
  EHT98527.1 556 YTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597
                 578899999999********************9888888876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.35
                 HHTGGGHHHHHHHHHHHHHHHHHHTTC.....EEEEEEEETT CS
        KH_2  39 vIGkgGsnikkigkelrkdieklegkk.....VklnivkVkk 75 
                 +IG g + +  i + + k++ek+ +       V +++ +V +
  EHT98527.1 640 AIGGGKEGLVHISQIADKRVEKVTDYLqmgqeVPVKVMEVDR 681
                 677777777778888888888776655555566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5345.45
//
Query:       EHT98528.1  [L=294]
Description: lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-17   61.1  15.0    3.8e-05   23.5   0.0    5.5  6  TPR_2     Tetratricopeptide repeat
    5.3e-16   57.7  15.8    5.2e-06   26.0   0.1    5.5  5  TPR_1     Tetratricopeptide repeat
    1.5e-11   44.3   5.5    8.5e-06   25.8   0.2    2.6  2  TPR_9     Tetratricopeptide repeat
    1.6e-09   37.3  11.9    5.4e-05   22.8   2.5    5.1  6  TPR_11    TPR repeat
    1.9e-09   37.9   2.2    3.3e-05   24.3   0.0    4.1  4  TPR_19    Tetratricopeptide repeat
    2.1e-09   37.4   5.8     0.0071   17.1   0.0    5.0  5  TPR_14    Tetratricopeptide repeat
    6.6e-09   35.3  12.6     0.0071   16.5   0.0    4.8  5  TPR_8     Tetratricopeptide repeat
    2.6e-07   31.2  17.6     0.0014   19.3   0.1    4.5  6  TPR_16    Tetratricopeptide repeat
    4.6e-05   23.6  13.6      0.012   15.9   1.1    4.1  4  TPR_12    Tetratricopeptide repeat
    0.00017   21.8  12.3       0.68   10.5   0.0    5.2  5  TPR_17    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.8  17.5        4.7    8.1   0.1    6.0  6  TPR_6     Tetratricopeptide repeat
      0.034   14.0  13.2        1.2    9.1   0.1    4.6  5  TPR_10    Tetratricopeptide repeat
      0.037   13.7   1.8       0.31   10.7   0.2    2.8  2  RPN7      26S proteasome subunit RPN7
      0.068   13.2  13.2        1.1    9.4   0.0    4.9  5  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.8e-06      0.01       1      33 [.      62      94 ..      62      95 .. 0.95
   2 !   23.5   0.0   2.9e-08   3.8e-05       1      34 []      96     129 ..      96     129 .. 0.95
   3 !   12.8   1.3   7.6e-05     0.097       2      34 .]     131     163 ..     130     163 .. 0.93
   4 ?   -0.5   0.1       1.4   1.8e+03      14      22 ..     187     195 ..     185     196 .. 0.81
   5 ?   -2.9   0.0       8.3   1.1e+04      12      20 ..     205     213 ..     203     213 .. 0.78
   6 !   14.8   0.2   1.8e-05     0.024       2      31 ..     235     264 ..     234     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.8e-06
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a++ly++G +y  lg  + A+++f +Al++ P+
  EHT98528.1 62 AQLLYERGVLYDSLGLRALARNDFSQALSIRPD 94
                678***************************997 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.9e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +e+ ++lG  + ++g+y+ A eaf+ +le+dP++
  EHT98528.1  96 PEVFNYLGIYLTQAGNYDAAYEAFDSVLEIDPTY 129
                 6899****************************85 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 7.6e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+ n+G a+y+ g+y+ A +++ +  + dPn+
  EHT98528.1 131 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 163
                 699*******************99999999986 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.4
       TPR_2  14 lgdyeeAle 22 
                 +++y++A++
  EHT98528.1 187 KQRYDKAVK 195
                 689****97 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 8.3
       TPR_2  12 yklgdyeeA 20 
                 ++lgd  eA
  EHT98528.1 205 FYLGDISEA 213
                 688888887 PP

  == domain 6  score: 14.8 bits;  conditional E-value: 1.8e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 e +++lG+ y+ lg+ + A+++f+ A++ +
  EHT98528.1 235 ETNFYLGKYYLSLGEKDNAEALFKLAVANN 264
                 678*********************999866 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.2e-07    0.0011       1      33 [.      62      94 ..      62      95 .. 0.96
   2 !   26.0   0.1   4.1e-09   5.2e-06       2      34 .]      97     129 ..      96     129 .. 0.95
   3 !    8.6   1.4    0.0013       1.7       3      23 ..     132     152 ..     131     154 .. 0.91
   4 ?    0.6   0.1      0.45   5.7e+02      14      23 ..     187     196 ..     185     196 .. 0.83
   5 !   10.2   0.4   0.00043      0.54       5      31 ..     238     264 ..     234     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.2e-07
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a+ ly +G++y +lg    A  ++++AL+++P+
  EHT98528.1 62 AQLLYERGVLYDSLGLRALARNDFSQALSIRPD 94
                6789****************************8 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 4.1e-09
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++++ lG  + + g+yd A e+++ +Le++P++
  EHT98528.1  97 EVFNYLGIYLTQAGNYDAAYEAFDSVLEIDPTY 129
                 789****************************97 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHTT-HHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAley 23 
                 a+ n+G a+++ g+y+ A ++
  EHT98528.1 132 AHLNRGIALYYGGRYKLAQDD 152
                 99***************9876 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.45
                 TT-HHHHHHH CS
       TPR_1  14 lgkydeAley 23 
                 +++yd+A+++
  EHT98528.1 187 KQRYDKAVKD 196
                 579****986 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00043
                 HHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALeln 31 
                 + lG  y++lg+ d A++ ++ A+  n
  EHT98528.1 238 FYLGKYYLSLGEKDNAEALFKLAVANN 264
                 689******************998766 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.2   4.6e-07   0.00059       6      64 ..      39      97 ..      34      99 .. 0.90
   2 !   25.8   0.2   6.6e-09   8.5e-06       6      64 ..     107     165 ..     102     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.6e-07
       TPR_9  6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64
                ++e   +r+ +++ ++ l + ++++++++RG+l+  lG  + A++d+ ++l++ pd p+
  EHT98528.1 39 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALSIRPDMPE 97
                555567899999*******************************************9775 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 6.6e-09
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                  ++ ++++a ++ +++l ++P   + ++ RG++l+  G+++ A +dL a+ + +p++p 
  EHT98528.1 107 TQAGNYDAAYEAFDSVLEIDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 165
                 79999**************************************************9985 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.94   1.2e+03      28      41 ..      62      75 ..      58      76 .. 0.76
   2 !   13.1   0.0   4.4e-05     0.056      13      37 ..      81     104 ..      79     108 .. 0.89
   3 !   22.8   2.5   4.2e-08   5.4e-05       5      39 ..     107     141 ..     105     144 .. 0.95
   4 ?   -1.4   0.0       1.5   1.9e+03       8      15 ..     188     195 ..     186     196 .. 0.71
   5 ?   -3.7   0.3       7.8     1e+04      32      42 .]     238     248 ..     236     248 .. 0.64
   6 ?    3.8   0.0     0.036        46      25      37 ..     250     262 ..     249     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.94
      TPR_11 28 aeayynLGlayykq 41
                a ++y++G++y  +
  EHT98528.1 62 AQLLYERGVLYDSL 75
                77899999999655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.4e-05
      TPR_11  13 AieaYkkAlkldPdnaeayynLGla 37 
                 A +++++Al ++Pd +e+++ LG +
  EHT98528.1  81 ARNDFSQALSIRPDMPEVFNYLG-I 104
                 78999******************.4 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 4.2e-08
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 ++ G+y++A ea+   l++dP++  a++n+G a+y
  EHT98528.1 107 TQAGNYDAAYEAFDSVLEIDPTYNYAHLNRGIALY 141
                 789******************************98 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.5
      TPR_11   8 GkyeeAie 15 
                 ++y++A++
  EHT98528.1 188 QRYDKAVK 195
                 67888876 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 7.8
      TPR_11  32 ynLGlayykqG 42 
                 + LG+ y+ +G
  EHT98528.1 238 FYLGKYYLSLG 248
                 55777776665 PP

  == domain 6  score: 3.8 bits;  conditional E-value: 0.036
      TPR_11  25 PdnaeayynLGla 37 
                  dnaea+++L++a
  EHT98528.1 250 KDNAEALFKLAVA 262
                 69*********98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.6e-08   3.3e-05      10      62 ..      81     133 ..      76     136 .. 0.90
   2 !   20.5   0.5   3.8e-07   0.00049       2      57 ..     107     162 ..     106     169 .. 0.88
   3 ?   -0.3   0.4       1.2   1.6e+03       9      24 ..     148     165 ..     140     195 .. 0.48
   4 ?    5.7   0.3     0.017        21      26      57 ..     235     266 ..     207     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.6e-08
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 A + ++qal+  p+++e+  +L + l ++g++d+A ++ d ++e dp   +++
  EHT98528.1  81 ARNDFSQALSIRPDMPEVFNYLGIYLTQAGNYDAAYEAFDSVLEIDPTYNYAH 133
                 77889******************************************954444 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.8e-07
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                  ++g+y++A +++ ++l+ dp + +a l+  +al+  g+++ A++ L a  ++dp+
  EHT98528.1 107 TQAGNYDAAYEAFDSVLEIDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 162
                 689**************************************999866666666666 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.2
      TPR_19   9 eAlalleqalqedpk..n 24 
                  A++ l + +q+dp+   
  EHT98528.1 148 LAQDDLLAFYQDDPNdpF 165
                 555555555666776332 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.017
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpd 57 
                 e   +L + +l+lg+ d Aeal + + + + +
  EHT98528.1 235 ETNFYLGKYYLSLGEKDNAEALFKLAVANNVN 266
                 556678999*************9988877776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0042       5.4       2      41 ..      63     102 ..      62     104 .. 0.90
   2 !   17.1   0.0   5.6e-06    0.0071       3      39 ..      98     134 ..      96     139 .. 0.85
   3 ?    3.9   0.1     0.098   1.3e+02       4      43 ..     133     174 ..     131     175 .. 0.86
   4 ?   -0.7   0.1       2.9   3.7e+03       6      20 ..     178     193 ..     166     201 .. 0.47
   5 !   10.6   0.0   0.00065      0.83       6      41 ..     239     278 ..     234     281 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0042
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 ++l++++ ++  lG  + A++ + +al+  Pd +e+  +l
  EHT98528.1  63 QLLYERGVLYDSLGLRALARNDFSQALSIRPDMPEVFNYL 102
                 689999***************************9987666 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 5.6e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawl 39 
                 +   l+ +l ++G++d+A ++++ +l+ +P+   a+l
  EHT98528.1  98 VFNYLGIYLTQAGNYDAAYEAFDSVLEIDPTYNYAHL 134
                 566799************************9766665 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.098
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda..eawlllaq 43 
                 +l ++ al+  G+++ A + l +  +++P+d+   +wl+l++
  EHT98528.1 133 HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPfrSLWLYLVE 174
                 6778999999*******************9965479999975 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.9
      TPR_14   6 alaeallalG.dpdeA 20 
                 ++a+a  al  ++d+A
  EHT98528.1 178 DAAKAKVALKqRYDKA 193
                 3333333332123443 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00065
      TPR_14   6 alaeallalGdpdeAiallrralalaPdd.ae...awlll 41 
                  l++++l lG+ d A+al++ a+a + ++  e   a+l+l
  EHT98528.1 239 YLGKYYLSLGEKDNAEALFKLAVANNVNNfVEhryALLEL 278
                 799*********************8776522311244555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.6e-06    0.0071       1      33 [.      62      94 ..      62      95 .. 0.96
   2 !   13.1   0.0   6.9e-05     0.088      10      33 ..     104     128 ..      98     129 .. 0.85
   3 ?   -2.0   0.2       4.8   6.1e+03       5      24 ..     134     153 ..     132     157 .. 0.75
   4 ?   -1.4   0.1         3   3.9e+03      14      22 ..     187     195 ..     177     197 .. 0.80
   5 !   11.5   0.3   0.00022      0.29       7      28 ..     240     261 ..     234     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.6e-06
                CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33
                a+++y  g +y++lg    A   + +al+++pd
  EHT98528.1 62 AQLLYERGVLYDSLGLRALARNDFSQALSIRPD 94
                6899***************************97 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.9e-05
                 HH.HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  10 iy.lklgdyeeAkeyyekaleldpd 33 
                 iy  + g+y++A e++  +le+dp+
  EHT98528.1 104 IYlTQAGNYDAAYEAFDSVLEIDPT 128
                 444899******************7 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.8
                 HHHHHHHHHTT-HHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyy 24 
                 +n g ++   g+y+ A+  +
  EHT98528.1 134 LNRGIALYYGGRYKLAQDDL 153
                 67777777889999998765 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 3
                 TT-HHHHHH CS
       TPR_8  14 lgdyeeAke 22 
                 +++y++A++
  EHT98528.1 187 KQRYDKAVK 195
                 568888887 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00022
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                 lg+ yl+lg++++A++ ++ a+
  EHT98528.1 240 LGKYYLSLGEKDNAEALFKLAV 261
                 89*****************997 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.5   0.00033      0.42      23      68 .]      50      96 ..      44      96 .. 0.77
   2 !   19.3   0.1   1.1e-06    0.0014      15      66 ..      80     128 ..      76     130 .. 0.95
   3 !    9.9   0.3   0.00087       1.1       1      39 [.     134     172 ..     134     173 .. 0.91
   4 ?   -3.0   0.1       9.7   1.2e+04      11      16 ..     187     193 ..     177     196 .. 0.47
   5 !    7.2   0.1    0.0061       7.8      38      63 ..     238     263 ..     227     268 .. 0.89
   6 ?    4.7   0.3     0.038        48      41      63 ..     241     263 ..     240     288 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
      TPR_16 23 alkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapdap 68
                 l++++ + d +a+ l+++g+++  +g  a+A+  +  al   pd p
  EHT98528.1 50 ILASRALTDDeRAQLLYERGVLYDSLGLRALARNDFSQALSIRPDMP 96
                44554444444**********************88888888888865 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.1e-06
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                  A++ + +al  +   Pd +e  ++lg  + ++g++++A +++++ l+ +p 
  EHT98528.1  80 LARNDFSQALSIR---PDMPEVFNYLGIYLTQAGNYDAAYEAFDSVLEIDPT 128
                 69***********...********************************9996 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00087
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAlll 39 
                 l+++ a+++ g+y  A+  l a+  +dp +P++  +l+l
  EHT98528.1 134 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 172
                 68999**************************98777775 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 9.7
      TPR_16  11 gd.yddA 16 
                 ++ yd+A
  EHT98528.1 187 KQrYDKA 193
                 3335555 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0061
      TPR_16  38 lllgdaalrqgrlaeAaalyraalra 63 
                 ++lg  +l +g+ + A+al++ a+++
  EHT98528.1 238 FYLGKYYLSLGEKDNAEALFKLAVAN 263
                 89999***************999876 PP

  == domain 6  score: 4.7 bits;  conditional E-value: 0.038
      TPR_16  41 gdaalrqgrlaeAaalyraalra 63 
                 g  +l +g+ + A+al++ a+++
  EHT98528.1 241 GKYYLSLGEKDNAEALFKLAVAN 263
                 44455555555555555555433 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.5    0.0021       2.7      39      76 ..      57      93 ..      43      94 .. 0.80
   2 !   15.9   1.1   9.4e-06     0.012       4      66 ..      97     151 ..      94     154 .. 0.79
   3 ?   -2.9   0.0       6.6   8.5e+03      17      23 ..     188     194 ..     182     196 .. 0.62
   4 !    6.2   0.1    0.0096        12      41      73 ..     232     262 ..     222     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0021
      TPR_12 39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                +  ++ a+ l+  g ly+ lg  + A++ + +al i++
  EHT98528.1 57 T-DDERAQLLYERGVLYDSLGLRALARNDFSQALSIRP 93
                3.336999*************************99986 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 9.4e-06
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                  + n l+  l+++g+yd A e ++ +lei      p++ ++  +  n g+++++ gry+ A++
  EHT98528.1  97 EVFNYLGIYLTQAGNYDAAYEAFDSVLEID-----PTY-NY--AHLNRGIALYYGGRYKLAQD 151
                 567679************************.....554.33..56777777777888888876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.6
      TPR_12  17 grydeAl 23 
                 +ryd+A 
  EHT98528.1 188 QRYDKAV 194
                 5666665 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0096
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelleeala 73 
                 h  +++t + Lg +y+ lg+ + A++l++ a+a
  EHT98528.1 232 H--LSETNFYLGKYYLSLGEKDNAEALFKLAVA 262
                 5..6777888******************98876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.76   9.7e+02      13      27 ..      62      76 ..      58      83 .. 0.79
   2 !   10.5   0.0   0.00053      0.68       4      32 ..      87     115 ..      84     117 .. 0.91
   3 !    8.5   0.1    0.0023       2.9       4      33 ..     121     150 ..     118     151 .. 0.90
   4 ?    6.2   0.2     0.012        15      13      33 ..     234     254 ..     231     255 .. 0.88
   5 ?    3.9   0.1     0.066        85      10      22 ..     250     262 ..     248     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.76
      TPR_17 13 adaynnLAelllknG 27
                a +++++++l+ ++G
  EHT98528.1 62 AQLLYERGVLYDSLG 76
                567899999998776 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtA 32 
                 +al + P+ ++++n+L+ +l ++G+++ A
  EHT98528.1  87 QALSIRPDMPEVFNYLGIYLTQAGNYDAA 115
                 799999999*****************998 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0023
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                  +le+dP++ +a+ n++ +l+  G+++ A+
  EHT98528.1 121 SVLEIDPTYNYAHLNRGIALYYGGRYKLAQ 150
                 579******************999999997 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.012
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 ++  ++L++++l++G+++ A+
  EHT98528.1 234 SETNFYLGKYYLSLGEKDNAE 254
                 56789***********99997 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.066
      TPR_17  10 PnnadaynnLAel 22 
                 ++na+a++ LA++
  EHT98528.1 250 KDNAEALFKLAVA 262
                 79*********86 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.022        29       3      32 ..      65      94 ..      63      94 .. 0.92
   2 ?    8.1   0.1    0.0037       4.7      12      31 ..     108     127 ..     101     129 .. 0.82
   3 ?    5.0   0.5     0.036        46       1      32 [.     131     162 ..     131     163 .. 0.88
   4 ?   -0.2   0.1       1.5     2e+03       8      19 ..     183     193 ..     173     195 .. 0.52
   5 ?    4.9   0.1     0.038        49       4      27 ..     238     261 ..     236     264 .. 0.84
   6 ?   -1.4   0.1       3.7   4.8e+03       1       9 [.     273     281 ..     273     292 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  3 lyklalsyrklgdtdkAlealerlikeYPd 32
                ly ++ +y +lg  + A+  + + ++  Pd
  EHT98528.1 65 LYERGVLYDSLGLRALARNDFSQALSIRPD 94
                9*********99*********999999997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHHHHHH-T CS
       TPR_6  12 klgdtdkAlealerlikeYP 31 
                 ++g++d+A ea++++++  P
  EHT98528.1 108 QAGNYDAAYEAFDSVLEIDP 127
                 579*************9988 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPd 32 
                 +A ++++ +++ +g++  A + l  + ++ P+
  EHT98528.1 131 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 162
                 799*********99*****9988888777776 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHH CS
       TPR_6   8 lsyrklgdtdkA 19 
                 +  +k+ ++dkA
  EHT98528.1 183 KVALKQ-RYDKA 193
                 223333.66666 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerli 27 
                 ++l++ y++lg++d+A ++++  +
  EHT98528.1 238 FYLGKYYLSLGEKDNAEALFKLAV 261
                 78999999999**99999998665 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHH CS
       TPR_6   1 dAlyklals 9  
                 +Al+ lal+
  EHT98528.1 273 YALLELALL 281
                 688888876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3     0.084   1.1e+02       9      32 ..      69      92 ..      61      92 .. 0.77
   2 ?    9.1   0.1   0.00091       1.2       6      29 ..     100     123 ..      98     125 .. 0.81
   3 ?   -0.8   0.3       1.2   1.5e+03       7      23 ..     135     151 ..     134     154 .. 0.80
   4 ?   -2.9   0.0       5.6   7.2e+03      16      24 ..     188     196 ..     187     197 .. 0.80
   5 ?    8.2   0.1    0.0018       2.3       8      30 ..     240     262 ..     239     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.084
      TPR_10  9 analrqrgrydeAealleealair 32
                ++++ ++g ++ A++++ +al+ir
  EHT98528.1 69 GVLYDSLGLRALARNDFSQALSIR 92
                778888888888888888888876 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00091
      TPR_10   6 nNLanalrqrgrydeAealleeal 29 
                 n L+++l+q g+yd+A + ++ +l
  EHT98528.1 100 NYLGIYLTQAGNYDAAYEAFDSVL 123
                 89*************966666555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.2
      TPR_10   7 NLanalrqrgrydeAea 23 
                 N ++al+  gry+ A +
  EHT98528.1 135 NRGIALYYGGRYKLAQD 151
                 77999999999987765 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.6
      TPR_10  16 grydeAeal 24 
                 +ryd+A+++
  EHT98528.1 188 QRYDKAVKD 196
                 599999987 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0018
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 L+ ++ ++g+ d Aeal++ a+a
  EHT98528.1 240 LGKYYLSLGEKDNAEALFKLAVA 262
                 899***************99886 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.19   2.5e+02     118     136 ..     101     119 ..      44     152 .. 0.70
   2 ?   10.7   0.2   0.00024      0.31      17      65 ..     217     263 ..     211     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.19
                 HHHHHHHHTT-HHHHHHHH CS
        RPN7 118 yeGlallairkfkeAaell 136
                 y G++l + +++  A e +
  EHT98528.1 101 YLGIYLTQAGNYDAAYEAF 119
                 4455555555555444443 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC CS
        RPN7  17 eeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrirey 65 
                 e+L+a+ +d  +++  e   +++  l+++Yl+ g++++A ++++ ++  
  EHT98528.1 217 ERLKADATD--NTSLAEHLSETNFYLGKYYLSLGEKDNAEALFKLAVAN 263
                 677777777..99999************************999877655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.5      0.11   1.4e+02      12      32 ..      56      74 ..      44      95 .. 0.68
   2 ?    6.5   0.4    0.0074       9.5       2      29 ..      99     126 ..      98     158 .. 0.91
   3 ?   -2.2   0.0       4.6   5.9e+03      13      19 ..     188     194 ..     186     195 .. 0.83
   4 ?    9.4   0.0   0.00087       1.1       4      31 ..     239     264 ..     238     267 .. 0.87
   5 ?   -1.5   0.1       2.6   3.3e+03       2      16 ..     278     292 ..     277     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.11
       TPR_7 12 lGdyeeAielyeqsLaltkdp 32
                l d e+A  lye+  ++ +d 
  EHT98528.1 56 LTDDERAQLLYER--GVLYDS 74
                7777888888888..555443 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0074
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 +++L+    + G+y+ A e +  +L+++
  EHT98528.1  99 FNYLGIYLTQAGNYDAAYEAFDSVLEID 126
                 5899999*************99977776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.6
       TPR_7  13 GdyeeAi 19 
                 ++y++A+
  EHT98528.1 188 QRYDKAV 194
                 69****8 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00087
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkd 31 
                 +L+  y +lG+ ++A+ l++   a+++ 
  EHT98528.1 239 YLGKYYLSLGEKDNAEALFKL--AVANN 264
                 79******************9..77765 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.6
       TPR_7   2 LlnLarlysrlGdye 16 
                 L  L++++ +l + +
  EHT98528.1 278 LALLGQAQDDLSESD 292
                 678999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2062.48
//
Query:       EHT98529.1  [L=622]
Description: ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-52  176.0   0.0    2.7e-51  173.8   0.0    1.9  2  DEAD        DEAD/DEAH box helicase
    2.9e-30  104.9   0.0      1e-28   99.9   0.0    2.6  2  Helicase_C  Helicase conserved C-terminal domain
    1.3e-20   73.1   0.0    3.1e-20   71.9   0.0    1.7  1  DbpA        DbpA RNA binding domain
    0.00063   19.8   0.0     0.0012   18.8   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit
     0.0028   17.0   1.3     0.0043   16.4   0.0    2.0  2  CMS1        U3-containing 90S pre-ribosomal complex subunit
  ------ inclusion threshold ------
      0.036   13.8   0.0      0.077   12.7   0.0    1.5  1  AAA_30      AAA domain
       0.15   11.9   0.1       0.54   10.1   0.0    1.9  2  DRTGG       DRTGG domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.0   1.1e-54   2.7e-51       2     174 ..      31     195 ..      30     197 .. 0.95
   2 ?   -0.4   0.0      0.34   8.7e+02      50     105 ..     247     302 ..     230     317 .. 0.71

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.1e-54
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvd 99 
                 +iQae+ip++l g+dvl+ a+TGsGKT+af++p+l+++    + ++p++l+++PtreLa q+++ +++f k+  +l+v++++gg++++ ql++l++g++
  EHT98529.1  31 PIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNID--PTIKAPQILVLAPTRELAVQVAEAMTEFSKHmRGLNVVALYGGQRYDVQLRALRQGPQ 127
                 8************************************93..799***************************9555************************ PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 +vvgtpgrl+d+l++g+l+ls++r lVlDEad++l +gf +++++i++q+       ++ +q+ ++SAT+p+ ++
  EHT98529.1 128 VVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQI-------PEGHQTALFSATMPEAIR 195
                 **************************************************.......45567*********8776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
                 EEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  50 alivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgtp 105
                 a+i + t+  + ++++ l++++ +    ++  +++  +++ l++l+ g +di+++t 
  EHT98529.1 247 AIIFVRTKNATLEVAEALERSGYNS-AALNGDMNQALREQTLERLKDGrLDILIATD 302
                 5666666666666666666666642.2344446677788899999766799999985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.11   2.8e+02      15      61 ..      73     124 ..      62     132 .. 0.75
   2 !   99.9   0.0   4.1e-32     1e-28       2     111 .]     231     339 ..     230     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.11
                 TTSEEEEEESSHH...HHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  15 eggkilifvntid...rlek....vklllekkgikvavlhgelpqnereeileq 61 
                 +  +il+ ++t++   +       +++ ++ +g++v++l+g    + ++++l+q
  EHT98529.1  73 KAPQILVLAPTRElavQ--VaeamTEFSKHMRGLNVVALYGGQRYDVQLRALRQ 124
                 56799********7542..2335555556666*********9999999888887 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 4.1e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k +al+++l + e+ + ++ifv+t++ +le ++ l e++g+++a+l+g+++q  re++le+ ++g+ d+Liatdva+rG+d+++++lV+n+d+p + +s
  EHT98529.1 231 KTDALVRFL-EAEDFDAAIIFVRTKNaTLEVAEAL-ERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAES 327
                 678889999.8999999*********866545555.999************************************************************ PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  EHT98529.1 328 YVHRIGRTGRAG 339
                 **********97 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.2e-23   3.1e-20       2      71 ..     482     551 ..     481     552 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.2e-23
                 EEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS----EE CS
        DbpA   2 lfinvGkkdklrpgdivgaiakeaglsgkdIGkIdildkfSfvevpkekaeevlkalkkkkikGrkvrve 71 
                 ++i+vG+ d+++ ++ivgaia+e+++s+++IG+I+++ ++S++e+pk+++ +vl+++ +++i +++++++
  EHT98529.1 482 YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQHFTRTRILNKPMNMQ 551
                 89*****************************************************************985 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.8e-07    0.0012      31     118 ..      50     140 ..      28     192 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.8e-07
                 ESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--........-SEEEEEHHHHHHTH CS
      ResIII  31 maTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkka.kekdstnkkilvttiqsldads 118
                 + TG+GKT    + l  ++    k  ++l+l+p+++l  q  e++++f++  +   +   + g++++   +  ++  +++v t  +l  ++
  EHT98529.1  50 AQTGSGKTAAFsLPLLNNIDPTIKAPQILVLAPTRELAVQVAEAMTEFSKHMRGLnVVALYGGQRYDVqLRALRQGPQVVVGTPGRLLDHL 140
                 57******9988**********9999**********************9987543556666666666645555666667777766666666 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0043     126     210 ..      74     158 ..      64     201 .. 0.80
   2 ?   -3.4   0.6       1.9   4.9e+03      11      36 ..     454     479 ..     446     490 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.7e-06
        CMS1 126 sPelLvltlaalRaaDlaralkklq..tkdskvakLFakhikleesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDas 210
                 +P++Lvl+ +   a+ +a a+ ++    ++ +v  L++   + + ++  l++    + vGtpgR+ld l+ ++l +++L+ +vlD +
  EHT98529.1  74 APQILVLAPTRELAVQVAEAMTEFSkhMRGLNVVALYGGQ-RYDVQLRALRQGP-QVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEA 158
                 6888888888877888888887776446778888888754.6666777777654.5889*************************964 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
        CMS1  11 enkekgkkkksekkRskkkerkkgkl 36 
                   +  g +  +++ R ++++r+ g++
  EHT98529.1 454 RRDSRGPRDSRDGDRPRRERRDVGDM 479
                 24678888889999999999999887 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     3e-05     0.077       5      67 ..      32      95 ..      29     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
      AAA_30  5 eQaaavealltsgdrvavltGpAGtGKtta..lkalreaweaa.ggrviglAptgkaAkvLaeelg 67
                 Qa+ + +ll+++d  ++  +  G+GKt a  l  l+++  +    ++++lApt + A ++ae++ 
  EHT98529.1 32 IQAECIPHLLAGRD--VLGMAQTGSGKTAAfsLPLLNNIDPTIkAPQILVLAPTRELAVQVAEAMT 95
                59999********9..8899999*****762255679998888679**************998654 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00021      0.54      27      68 ..      90     132 ..      83     140 .. 0.86
   2 ?   -2.5   0.0       1.7   4.3e+03      86     104 ..     248     266 ..     232     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
                 -SS-HHHHHHHHHT.SEEEEEETT-HHHHHHHTT-TEEEEEEE CS
       DRTGG  27 gamsvenmlerlke.gdlvivpGDRediqlaaleagiaalilT 68 
                 +a ++ ++ ++++  + +   +G R+d+ql al +g + ++ T
  EHT98529.1  90 VAEAMTEFSKHMRGlNVVALYGGQRYDVQLRALRQGPQVVVGT 132
                 678899999999999999****************997777655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                 --EEE-SS-HHHHHHHHHT CS
       DRTGG  86 lpvlsveldtfttakrinq 104
                 +  ++++  t+++a+++++
  EHT98529.1 248 IIFVRTKNATLEVAEALER 266
                 5567889999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4589.80
//
Query:       EHT98530.1  [L=336]
Description: putative enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-32  113.6   1.7    3.6e-32  112.1   1.7    1.6  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   1.7     2e-36   3.6e-32      20     310 ..      25     305 ..       8     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 2e-36
  Bac_luciferase  20 aslrylvelaraaEelGfdavwvaehhggpgga.ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgtggpave 113
                      ++++ ++lar+aE+lGf++ w+aehh++ g a + + +l+++laa T+++rlg++  +l+++ P+v+A+q+ tL  l++ R++lglg+     +
      EHT98530.1  25 DAFQNSLALARQAEALGFERYWLAEHHNMTGIAsAATAVLIGYLAANTTTLRLGSGGIMLPNHAPLVIAEQFGTLASLYPDRIDLGLGRAPGSDQ 119
                     4799*************************99999999****************************************************999999 PP

  Bac_luciferase 114 errfGvdhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgp.iPvyvaaaspaglelaarhadglllag.eppeeaaelierl 206
                      ++  ++++    +++ f + + +l       f+ e    +++ ++p pg g  iPv++ ++s  +++l a+ + ++ +a+ + p+++ +++  +
      EHT98530.1 120 RTMLALRRNLSGMQADTFPDDVAELI----HWFDAEA--GAQPPVQPVPGLGMkIPVWLLGSSLYSAQLSAKMGLPFAFAShFAPDQLFQALHVY 208
                     88886655555555555555555555....1122222..145666676744438***************************************** PP

  Bac_luciferase 207 ragaaeagrdpadirvgisltvivadteeeAraea....raliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaatalvGtp 297
                     r+      r  a+++ ++ + +++adte +Ar  +    +++i    + +   +g+  + +  + +  +++ ++ g+++a+      ++ lvG+ 
      EHT98530.1 209 RENFTPSAR-LAEPYATVCINIVAADTESDARFLFtsmqQQFI----NLRRGKPGPLPA-PVQNMDSLWSPSEQYGVQQAL------SMSLVGDV 291
                     **8888888.779*******************99955544444....222222222222.223445666666666666666......66778888 PP

  Bac_luciferase 298 eqvaerlaa.yaea 310
                     + v+  la  ++e+
      EHT98530.1 292 DKVRHGLASlLRET 305
                     88887777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2676.72
//
Query:       EHT98531.1  [L=294]
Description: putative protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-10   39.5   0.0    4.5e-10   39.1   0.0    1.2  1  Peptidase_U32  Peptidase family U32


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   2.5e-14   4.5e-10      19     126 ..      92     201 ..      76     263 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2.5e-14
  Peptidase_U32  19 vivqDpgvlelareeapelelhlStqanitnseavrflkelGasrvvlaRElsleeikaikekvp......dvelEvfvhGalcvaysGrcllssy 108
                    +  +D+g +++a e+  +l++ +    n++n++++ +l + G++r +l+ E+  + +  + ++++      + e+Ev+ +G l +a s rc++ + 
     EHT98531.1  92 IEANDMGTVNMAAER--KLPFVAGPTLNVYNADTLHLLVKEGMTRWCLPVEMPRDWLLPLLAQCEtrgireQFEVEVLAYGHLPLALSARCFTARS 185
                    5679***********..******************************************9999999999999*********************999 PP

  Peptidase_U32 109 lsgrsanrgecaqpcrl.d 126
                     +     +++c   cr+ +
     EHT98531.1 186 ENRA---KDDCETCCRHyP 201
                    4443...555555555532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2136.76
//
Query:       EHT98532.1  [L=331]
Description: putative collagenase-like peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-64  216.0   0.0    5.2e-64  215.6   0.0    1.2  1  Peptidase_U32  Peptidase family U32
     0.0048   16.4   0.5     0.0081   15.6   0.5    1.4  1  AP_endonuc_2   Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0   5.8e-68   5.2e-64       3     232 ..      76     330 ..      74     331 .] 0.95

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 5.8e-68
  Peptidase_U32   3 klrkyleklaelgvdavivqDpgvlelareeapelelhlStqanitnseavrflkel.GasrvvlaRElsleeikaikekvpdvelEvfvhGalcv 97 
                    +++++++ +a++g+da+i++D++ l++are++p+++ hlS+qa++tn ea+rf++++   +rvvl+R lsl+++k++++++  v lEvf +G+lc+
     EHT98532.1  76 RWQRAIDVAADCGADALILADIATLAYARERYPHIARHLSVQASATNLEAIRFYHRHfTLHRVVLPRVLSLHQVKQLARST-PVPLEVFAFGSLCI 170
                    789999**************************************************99***********************.8************* PP

  Peptidase_U32  98 aysGrcllssylsgrsan.rgecaqpcrldyr.............lieekekgeeepieedekgt........yllspkd.lclieelpelleaGv 170
                    + +Grc+lss+l+g+s+n +g+c+ +   +++             l+++   +e +++++ +kg+        ++l++ + l+++e lpell+aG+
     EHT98532.1 171 MAEGRCYLSSWLTGESPNsKGACSPAKFVRWQqtpagmevrlndvLVDRYGADESAGYPTLCKGRyeideqryHVLEEPTsLNTLELLPELLQAGI 266
                    ***********************98876666666**********999999***********************99988888*************** PP

  Peptidase_U32 171 dslKIeGRmkspeyvatvvrvYreaidallagr..eevkeelkeeleklanrgltsgfllgrke 232
                    +s+KIeGR++sp y+++v+rv+r+ai+++ a +  ++v+e++++ l  l+++  t+  +++r +
     EHT98532.1 267 ASVKIEGRQRSPAYISEVARVWRQAINRCQAAPdsFDVSEKWMQTLGALSEGTQTTLGAYHRDW 330
                    *********************************99**************999999988887766 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   9.1e-07    0.0081       1      90 [.      13      95 ..      13     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.1e-07
                  HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEE CS
  AP_endonuc_2  1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlh 90
                  l+aa e G+d+v + ++d+ ++++   ++l    k l+e+      l+ + r  ++  +  ++   +sv++++rai+ aa++Ga+ l+l 
    EHT98532.1 13 LRAAVENGADAVYVGLKDDTNARH--FAGLNFTDKKLREAACY---LHQHRRKLHVAINTFAHP--DSVHRWQRAIDVAADCGADALILA 95
                  68999*****************97..78888888888888888...444444455444544444..589*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2293.00
//
Query:       EHT98533.1  [L=174]
Description: putative lipid carrier protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-16   59.5   0.2    5.3e-16   59.0   0.2    1.3  1  SCP2          SCP-2 sterol transfer family
    0.00064   20.0   0.1     0.0012   19.1   0.1    1.4  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.2   5.9e-20   5.3e-16      13     101 .]      46     133 ..      33     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 5.9e-20
                 HHHHHCCH-E.EEEEEECTC.TEEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHHH CS
        SCP2  13 kkealkklag.vlrfdltdlkgsltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleallk 101
                 ++++l  l+g  l +++ d+++++  +l +g+l+v++++  +adv ++++++dll +a +k++p+++f+q++L ieGD+el+++++++++
  EHT98533.1  46 AEGELDFLQGrFLGIEILDMHLTWMTTLEDGRLKVLQHA--EADVWFRGNANDLLLVAARKADPDMLFFQRRLLIEGDTELGLEVKNVMD 133
                 6889999****************************8775..9*********************************************996 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.4e-07    0.0012      38     117 ..      60     135 ..      55     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-07
                   EEETTTTEEEEEEEETTEEEE.ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHHHCTB--- CS
  Alkyl_sulf_C  38 lvvtDvdekyllrlsngvLthtrkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakllslldef 117
                   + + D+  +++++l++g L    +   +++ad+ +  + ++L+ ++++ka ++ ++ + +l ieGd+e   ++ +++d  
    EHT98533.1  60 IEILDMHLTWMTTLEDGRLKV-LQ---HAEADVWFRGNANDLLLVAARKADPDMLFFQRRLLIEGDTELGLEVKNVMDAI 135
                   56679999*************.54...689**************************************999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1315.36
//
Query:       EHT98534.1  [L=168]
Description: GNAT family acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-07   30.8   0.0    4.1e-07   30.3   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    7.5e-06   26.3   0.0    1.1e-05   25.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.001   19.2   0.1     0.0027   17.8   0.0    1.7  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0018   18.3   0.0     0.0037   17.3   0.0    1.5  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0066   16.4   0.0     0.0087   16.0   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.1e-10   4.1e-07      33      99 ..      39     111 ..      13     120 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.1e-10
                     C..EEEE.EEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EE CS
  Acetyltransf_1  33 e..gllv.aeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vl 99 
                         ++v   ++g+++G++ +++++   e++g + +  laV++  rg+G++++L+ + ++ + e g+ ++ vl
      EHT98534.1  39 LltLGVVaTDDEGQVLGYAAFSPVTMqgEDRGWVGLAPLAVDEPLRGQGIAKRLIYEGLDTLNEFGYSAVvVL 111
                     23223333666799************99999999999***********************9999999776354 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     3e-09   1.1e-05       7      75 ..      45     123 ..      32     124 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3e-09
                     EEEET.TEEEEEEEEEEES......TCTEE.....EEE-GGGTTSSHHHHHHHH.....TTSEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   7 Vaedd.gkivGfialslld......aeitr.....laVdpeyrgkGiGraLlea.....aekgiile.qlelnaekaikfYeklGFe 75 
                     Va dd g+++G++a+s++       +   +     laVd+  rg+Gi+++L+       +e g+  + ++ l +    +++  lGFe
      EHT98534.1  45 VATDDeGQVLGYAAFSPVTmqgedrG---WvglapLAVDEPLRGQGIAKRLIYEgldtlNEFGY--SaVVVLGE---PALFDPLGFE 123
                     5666669999********99874431...256688****************9542232222442..22233322...2366666665 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.5e-07    0.0027       8      61 ..      50     108 ..      44     110 .. 0.72
   2 ?   -2.3   0.0       1.4   5.2e+03      44      54 ..     145     155 ..     139     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.5e-07
  Acetyltransf_CG   8 egeevafleYe.....vrkegvldfthTeVpeelrGkGiAkkLvkaalddareeglkvv 61 
                      eg+  +++ ++      ++ g + +    V+e lrG+GiAk+L+ + ld   e g++ v
       EHT98534.1  50 EGQVLGYAAFSpvtmqGEDRGWVGLAPLAVDEPLRGQGIAKRLIYEGLDTLNEFGYSAV 108
                      55566666665555433333366677778*********************999988766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
  Acetyltransf_CG  44 kLvkaalddar 54 
                      +L++ a+dda+
       EHT98534.1 145 RLADNAFDDAE 155
                      58888888886 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06    0.0037      16     127 ..      17     124 ..      10     125 .. 0.81
   2 ?   -3.1   0.0       2.1   7.5e+03      12      27 ..     142     157 ..     137     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
                     HHHHHTT----H..HHHHHHHHHHTTS.EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--E CS
  Acetyltransf_9  16 llkyaFqdeespleeireyfrkllees.rvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqpl 109
                     ll+++F  + ++  e+++++r+       v+   d+g++ g +a+ p+++  +G+     g++  av+   rg+g++++L+ + l+ ++e g++ 
      EHT98534.1  17 LLRRCFPTSAEA--ELTQALREDGLLTlGVVATDDEGQVLGYAAFSPVTM--QGEDRGWVGLAPLAVDEPLRGQGIAKRLIYEGLDTLNEFGYSA 107
                     788888888888..466655554444414555555999999999999876..688888899*********************************9 PP

                     EEE--SSHHHHHTTT-EE CS
  Acetyltransf_9 110 sllfPssipiYrrfGyei 127
                     ++  +  ++++ ++G+e+
      EHT98534.1 108 VVVLGE-PALFDPLGFEP 124
                     999997.99999999997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
                     HHHHHHHHHTT----H CS
  Acetyltransf_9  12 evlellkyaFqdeesp 27 
                     +v++l + aF d e +
      EHT98534.1 142 QVYRLADNAFDDAEGR 157
                     6778888888877765 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-06    0.0087      33      81 ..      44     101 ..      12     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-06
  Acetyltransf_10  33 llvaeeggkivGvi.....elrdgs........hisllfVdpeyrgqGigkaLleaveeeae 81 
                      +++ +++g+++G++     +              ++ l+Vd+  rgqGi+k+L+ + ++ ++
       EHT98534.1  44 VVATDDEGQVLGYAafspvT----MqgedrgwvGLAPLAVDEPLRGQGIAKRLIYEGLDTLN 101
                      45667889999999554433....3444578999999****************988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1352.84
//
Query:       EHT98535.1  [L=95]
Description: putative endonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-11   43.2   0.0    4.2e-11   43.0   0.0    1.1  1  GIY-YIG   GIY-YIG catalytic domain


Domain annotation for each model (and alignments):
>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   2.3e-15   4.2e-11       2      75 ..       5      75 ..       4      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2.3e-15
                -EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTTS CS
     GIY-YIG  2 ggvYiirskenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyksn 75
                +  Y+i+  ++  +Y+G+t+++ +Rl qH +g++a++ r+  k+p++l++ +   ++ +a +lE+++++  +++
  EHT98535.1  5 WQLYLIKTAAGL-LYTGITTDVTRRLAQHECGRGARALRG--KGPLALVYACAAGDRAQASRLEYQVKQLPRQR 75
                778999998766.5*************************8..**************************987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 769.47
//
Query:       EHT98536.1  [L=142]
Description: uncharacterized UPF0306 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0012   19.0   0.0     0.0015   18.6   0.0    1.1  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.021   14.7   0.0    1.1  1  SSFA2_C         Sperm-specific antigen 2 C-terminus


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-07    0.0015      11      88 .]      13      93 ..       6      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.7e-07
                    HSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT....GSEEEEEEEEEEEESCHH CS
  Putative_PNPOx 11 eskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde....lgrgvrieGtaelvsdge 88
                    ++++  l +  + +  ++    ++++ +r  +++ t  d+r++    +np+va ++   +    l +gv+++G+++ + ++e
      EHT98536.1 13 KQHVLSLCCS-AGNELWCANCYYVFDEARMAFWLMTEPDTRHGLLASKNPHVAGTINGQPktvlLIKGVQYRGRIRQLREEE 93
                    5555556554.77779999999**********************************99999***99***********99986 PP

>> SSFA2_C  Sperm-specific antigen 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.3e-06     0.021      46     116 ..      58     131 ..      19     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-06
     SSFA2_C  46 aaaPPpassstemqLrrvL....hdirgtvqsLsqvsvlrgedsaasltstqrssvlplyentlqelqvkrrsLn 116
                 + + P  +++++ q + vL     + rg +++L   + +++ ++ ++ + + rs   pl+e tl+el+++  sL 
  EHT98536.1  58 S-KNPHVAGTINGQPKTVLlikgVQYRGRIRQLREEEAVEARHAYQRRFPMSRSVSAPLWEITLDELKMTDNSLG 131
                 3.3455788888888888844333789******************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1232.36
//
Query:       EHT98537.1  [L=173]
Description: putative intracellular protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-53  180.6   0.1    2.2e-53  180.4   0.1    1.0  1  DJ-1_PfpI      DJ-1/PfpI family
    5.8e-05   22.9   0.0    6.9e-05   22.7   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
    0.00087   19.1   0.0     0.0026   17.6   0.0    1.8  1  Peptidase_C26  Peptidase C26
     0.0026   17.4   0.0     0.0036   16.9   0.0    1.3  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.037   13.9   0.0    1.3  1  SNO            SNO glutamine amidotransferase family
      0.071   12.7   0.1      0.089   12.4   0.1    1.3  1  Catalase_C     C-terminal domain found in long catalases
       0.12   12.1   0.0       0.29   10.8   0.0    1.7  1  ThiJ_like      ThiJ/PfpI family-like


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.1   8.7e-57   2.2e-53       2     163 ..       4     167 ..       3     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 8.7e-57
                 EEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS.TSEEEETTS.EEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEE CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkragikvdvvsvd.keevkgsrG.lkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklva 98 
                 k++vl++d++ed E+++p++v krag++v++++ + +++vkg++G ++v++d+s+ddv+aae+Dal+lpGG++ p+ lr ++++v+++k+f+ +gk+v+
  EHT98537.1   4 KIAVLITDEFEDSEFTSPAEVYKRAGYEVVTIEEQaGKTVKGKQGdAEVKIDRSIDDVSAAEFDALLLPGGHS-PDALRGDDRFVAFTKDFVASGKPVF 101
                 9********************************99999*******9***************************.************************* PP

                 EETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETT.EEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI  99 aICagpqlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgn.lvTsrgpgaaiefalell 163
                 aIC+gpqlL++a+ ++gr++Ts++a+  +l +aga++ d++vvvd + lvTsr+p ++++f++e l
  EHT98537.1 102 AICHGPQLLISANGVRGRKMTSVKAIAVDLINAGADFRDEEVVVDSDkLVTSRTPADLPAFNRESL 167
                 ********************************************9988**************9976 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.7e-08   6.9e-05      25      91 ..      53     117 ..      22     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.7e-08
                 EEEETTSHHHHHHH....THHSTSEEEEEEESSCTT...TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTE CS
      GATase  25 evvpidasaeeile....llknpdgilvsgGpgspg...vegkieaikearenkiPiLGICLGmQllaiefgrk 91 
                 ++++         +     + ++d++l++gG    +    +  ++++k +  +++P++ IC G Qll+ + g  
  EHT98537.1  53 KIDR---------SiddvSAAEFDALLLPGGHSPDAlrgDDRFVAFTKDFVASGKPVFAICHGPQLLISANGVR 117
                 2222.........222234789*********887777678889999999*******************999873 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     1e-06    0.0026      95     155 ..      87     147 ..      11     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1e-06
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalG..Gtlyqdieeqsgltdhreheqsaashavkvek 155
                    +a  +  +++g+P+++iC G qll  a G  G+ +++++     +d  ++ +++   +v v++
     EHT98537.1  87 VAFTKDFVASGKPVFAICHGPQLLISANGvrGRKMTSVK--AIAVDLINAGADFRDEEVVVDS 147
                    67788999****************877663344444444..3444555555555555555555 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0036      31      91 ..      57     113 ..      43     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
    GATase_3  31 plkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGee 91 
                 ++ d s  ++ d+++lpGg +     al  + ++    k+++++g+pv++iC G q+L + 
  EHT98537.1  57 SIDDVSA-AEFDALLLPGGHSPD---ALRGDDRFVAFTKDFVASGKPVFAICHGPQLLISA 113
                 3344444.66*********9764...45555567778889999**************9765 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.037      31      93 ..      63     124 ..      23     137 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                 GCC-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHH..HHHHCCEETTBSS-SS CS
         SNO  31 laevdaliiPGGestamskliertglyedllefvknsekvvlGtCaG..lillskelenelvktl 93 
                  ae dal++PGG s    +      ++   ++fv+ + k+v+  C G  l++ ++++ + ++ ++
  EHT98537.1  63 AAEFDALLLPGGHSPDALR--GDDRFVAFTKDFVASG-KPVFAICHGpqLLISANGVRGRKMTSV 124
                 4789*********987655..55556788899**999.********9544444555555555544 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.5e-05     0.089       4     115 ..       4     113 ..       1     147 [. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.5e-05
  Catalase_C   4 kVgiLasndseaslaqakalaaalaaegvdvtvvaeklg....saeg.....vnrTYstadaveFDaivvadgaeslfsakataasslfpagrplqlll 93 
                 k+++L++  +e + ++ ++ a+  +++g +v+ + e+ g    +++g     ++r+    +a+eFDa+++ +g          ++++l  ++r + + +
  EHT98537.1   4 KIAVLIT--DEFEDSEFTSPAEVYKRAGYEVVTIEEQAGktvkGKQGdaevkIDRSIDDVSAAEFDALLLPGG---------HSPDALRGDDRFVAFTK 91 
                 7888886..44566777777888888888888885444443333333555569********************.........24567888999999999 PP

  Catalase_C  94 dayrhgKpigalGsgaealkaa 115
                 d  + gKp+ a+ +g ++l +a
  EHT98537.1  92 DFVASGKPVFAICHGPQLLISA 113
                 9999999999998888766544 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.29      81     142 ..      62     114 ..      13     130 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
   ThiJ_like  81 sleeydlvllpGGsdkavrelleserlhsllveylklvkrekepskvlgaicqgvlalafak 142
                 s  e+d++llpGG+ +    l  ++r  +  ++++       +  k + aic+g   l  a+
  EHT98537.1  62 SAAEFDALLLPGGHSPDA--LRGDDRFVAFTKDFV-------ASGKPVFAICHGPQLLISAN 114
                 6679**********9977..666777777777777.......55678888888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1362.41
//
Query:       EHT98538.1  [L=210]
Description: putative nucleoside-diphosphate-sugar epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-05   24.0   0.0      9e-05   22.0   0.0    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0003   20.1   0.0      0.018   14.2   0.0    2.1  2  NAD_binding_4   Male sterility protein
    0.00035   20.5   0.0    0.00056   19.9   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
    0.00037   20.0   0.0    0.00057   19.5   0.0    1.2  1  HIM1            HIM1
     0.0016   18.9   0.0     0.0056   17.1   0.0    1.9  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
  ------ inclusion threshold ------
      0.027   13.6   0.0       0.64    9.1   0.0    2.2  2  RmlD_sub_bind   RmlD substrate binding domain
      0.033   13.6   0.0      0.044   13.2   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.5e-08     9e-05       1      52 [.       4      54 ..       4     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.5e-08
                EEEETTTSHHHHHHHHHHHHCT.SE.EEEEES-STTTTCHHCHHCEEEE--TT- CS
   Epimerase  1 ilVtGatGfiGsalvkallekg.ye.vigldrlssasntarledlelveldltd 52
                +lVtGatG++Gs+l++ l +   ++ +i+ +r+     ++    ++ ve dltd
  EHT98538.1  4 VLVTGATGLVGSYLLRLLVDDPrIDeIIAPTRRALPVMNKV---INPVEDDLTD 54
                79********************9555******944333333...2556666664 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.9e-06     0.018       1      31 [.       6      36 ..       6      55 .. 0.86
   2 !    4.1   0.0    0.0083        21     161     211 ..     107     154 ..      64     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.9e-06
                   EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE-S CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev.kiyllvRa 31
                   +TGaTG +G++Ll+ L+++  ++ +i++  R 
     EHT98538.1  6 VTGATGLVGSYLLRLLVDDP-RIdEIIAPTRR 36
                   7************9888886.58899988775 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0083
                    HH--EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SS CS
  NAD_binding_4 161 ldederaklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitgesk 211
                    l   ++  ++  p  Y++ K + E+ +r+++     ++v vRps ++ge k
     EHT98538.1 107 LAVSAHGAHRHSPLLYSRVKGEMENTLRHQNWA---RLVFVRPSLLLGERK 154
                    444555667777889*************99955...7899*****999544 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.2e-07   0.00056       1     180 [.       8     189 ..       8     193 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.2e-07
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-.SEEEES---TCC..HHHH............HH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkga.daVvsalggggk..deeg............ak 79 
                     GAtG vG++l++ l+++    e+ a +R++  +     ++ ++ ve d+t   d+ + l+g   +V+++lg+++k     +            ++
      EHT98538.1   8 GATGLVGSYLLRLLVDDPrIDEIIAPTRRALPVM----NKVINPVEDDLT---DVLQPLDGPlTTVFCCLGTTRKqaG--SkaafihvdytlvVD 93 
                     9****************95445555555554443....589999999999...677788877258*****99988551..344567777434444 PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSS.SEEEEEEE-CEE-ST--SEEEE...ETTS...S----E CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasg.ldwTivrpggLtdepttkyrvv...ekge...pfkggs 167
                     ++++ + + g  +++ vsa g+ +++    +         y + k ++e+ lr+ +    ++vrp+ L  e + k r     +      p + + 
      EHT98538.1  94 TALNGL-RLGATQMLAVSAHGAHRHS----PL-------LYSRVKGEMENTLRHQNwARLVFVRPSLLLGERKEKRRGEslmAPLFswlPGNWRA 176
                     444444.57999*********99532....22.......47788**********862569********887644333221112222111223459 PP

                     EEHHHHHHHHHHH CS
  NAD_binding_10 168 isradVAdvlvav 180
                     +s +dVA++l ++
      EHT98538.1 177 VSAQDVARCLHQQ 189
                     9*****9998765 PP

>> HIM1  HIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.2e-07   0.00057      47     147 ..      62     157 ..      39     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.2e-07
        HIM1  47 dvetlistLGstsaeekkskvkrkfvdYeLnlklakeFantedKklvivTsfNnkllskvspYfrtKlklEndLktklepklkeLviLRPGPlvGehtk 145
                  + t+ + LG+t++ +  sk+   +vdY+L ++ a +  +    +++ v +   +  s +  Y r+K ++En+L+++     ++Lv++RP  l+Ge ++
  EHT98538.1  62 PLTTVFCCLGTTRK-QAGSKAAFIHVDYTLVVDTALNGLRLGATQMLAVSAHGAHRHSPL-LYSRVKGEMENTLRHQN---WARLVFVRPSLLLGERKE 155
                 5789********97.566777899*************9999999***9999988877765.5*************975...779***********9987 PP

        HIM1 146 pi 147
                 + 
  EHT98538.1 156 KR 157
                 65 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.2e-06    0.0056       1      30 [.       3      32 ..       3      77 .. 0.83
   2 ?   -0.6   0.0      0.68   1.7e+03      30      46 ..      70      86 ..      51     119 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvl 30
                    +v + GatG vG+ llrlL ++p ++++ +
      EHT98538.1  3 RVLVTGATGLVGSYLLRLLVDDPRIDEIIA 32
                    68999*******************998875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.68
                    EEESTTTTTSBHHHHSG CS
  Semialdhyde_dh 30 llsssrsaGkklaeavk 46
                    l +++++aG+k a+ + 
      EHT98538.1 70 LGTTRKQAGSKAAFIHV 86
                    44455578888888765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00025      0.64       2      36 ..       3      39 ..       1      56 [. 0.77
   2 ?    2.2   0.0     0.031        79     124     157 ..     121     155 ..     112     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
                   EEEEESTTSHHHHHHHHHCTT..TSEEEEEE-TTT-- CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlae..eglevlaltreeld 36
                   ++lvtGa+G++Gs L ++l    +  e++a+tr++l 
     EHT98538.1  3 RVLVTGATGLVGSYLLRLLVDdpRIDEIIAPTRRALP 39
                   79***************99762244478888887654 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.031
                    HHHHHHHHHHHHHHH.H-SSEEEEEE-SEESSSSS CS
  RmlD_sub_bind 124 vYGrtKlaGEqavla.agkkalivRtswvygekgk 157
                    +Y r K ++E++ ++ + ++ + vR s ++ge+++
     EHT98538.1 121 LYSRVKGEMENTLRHqNWARLVFVRPSLLLGERKE 155
                    799***********9345688889*****999765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.044       1      20 [.       5      24 ..       5      53 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                   EEETTTSHHHHHHHHHHHHC CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlek 20
                   L+TG +G +Gsyl++lL++ 
     EHT98538.1  5 LVTGATGLVGSYLLRLLVDD 24
                   9****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1568.09
//
Query:       EHT98539.1  [L=154]
Description: anaerobic ribonucleotide reductase activating protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-48  163.3   0.0    4.1e-48  163.2   0.0    1.0  1  Fer4_12      4Fe-4S single cluster domain
    1.7e-31  108.8   0.0    2.1e-31  108.5   0.0    1.1  1  Fer4_14      4Fe-4S single cluster domain
     0.0024   18.3   0.0     0.0029   18.0   0.0    1.1  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   6.9e-52   4.1e-48       1     138 [.      12     150 ..      12     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 6.9e-52
     Fer4_12   1 lnGeGvrlslfvsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesi..egltllGGEPllpenaeallelvkevkeekpekdiwlytgytle 97 
                 +nG+G+r++lfvsgC+++C+gC+n+ tw+ +sg +ft +++e++++dl++++i  +gl+l+GG+Pl+p+n++ + +lvk+vk+++p kdiwl+tgy + 
  EHT98539.1  12 VNGPGTRCTLFVSGCEHQCRGCYNQRTWRLDSGVPFTLAMEEQLLADLNDTRIprQGLSLSGGDPLHPKNVPHIRRLVKRVKQTCPGKDIWLWTGYEMA 110
                 79**************************************************999******************************************** PP

     Fer4_12  98 elskkekeellkeidvlvdGkfeesledeslrfrgssnqri 138
                  l++ +++e+l  idvl+dG+fee+++d +l +rgs+nq i
  EHT98539.1 111 SLTS-AQREVLPWIDVLIDGRFEEAEKDATLLWRGSRNQHI 150
                 **97.5*********************************98 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   3.5e-35   2.1e-31       1     118 []      21     130 ..      21     130 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 3.5e-35
     Fer4_14   1 lfvrlsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtleielektp 99 
                 lfv  sgC+++C+gC+n+ tw+ ++g p+t  ++eq l+dl++++i +qgl+l+GG+PLh++n +++ +lvkr+k+ +p k+iwl+t++ ++ +l    
  EHT98539.1  21 LFV--SGCEHQCRGCYNQRTWRLDSGVPFTLAMEEQLLADLNDTRIPRQGLSLSGGDPLHPKNVPHIRRLVKRVKQTCPGKDIWLWTGYEMA-SL---- 112
                 688..*************************************************************************************99.43.... PP

     Fer4_14 100 dlkeklealskidllvdge 118
                  + +++e+l  id+l+dg+
  EHT98539.1 113 -TSAQREVLPWIDVLIDGR 130
                 .467899999999**9996 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.8e-07    0.0029       3      75 ..      22     104 ..      20     133 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.8e-07
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH.HHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC...........C CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........x RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelk.aekgvkevilgggepllypdfvellerlakla...........v 75 
                  ++ gC ++C+ C++ +t  r + g   ++ + ++++  l   +    ++ l+gg+pl  p+ v  ++rl+k+             
   EHT98539.1  22 FVSGCEHQCRGCYNQRT-WRLDSGVPFTLAMEEQLLADLNdTRIPRQGLSLSGGDPLH-PKNVPHIRRLVKRVkqtcpgkdiwlW 104
                  789*************9.6666666666666666666665566669**********99.55556666655554455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1157.29
//
Query:       EHT98540.1  [L=712]
Description: anaerobic ribonucleoside-triphosphate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-177  591.8   0.0     2e-177  591.4   0.0    1.1  1  NRDD            Anaerobic ribonucleoside-triphosphate reducta
    1.3e-27   96.4   0.0    4.4e-27   94.7   0.0    1.9  2  Gly_radical     Glycine radical
    4.3e-21   75.3   0.4    2.8e-20   72.7   0.1    2.2  2  ATP-cone        ATP cone domain
  ------ inclusion threshold ------
       0.08   12.7   0.5       0.18   11.5   0.5    1.5  1  DUF4051         Protein of unknown function (DUF4051)
        1.2    9.1   5.8       0.45   10.5   2.3    2.2  2  OrfB_Zn_ribbon  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> NRDD  Anaerobic ribonucleoside-triphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  591.4   0.0  5.6e-181    2e-177       1     561 []     116     705 ..     116     705 .. 0.96

  Alignments for each domain:
  == domain 1  score: 591.4 bits;  conditional E-value: 5.6e-181
                 .XHTTHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHHHTTSEEETTGGGTTT..S--EEE--SHHHHHH-CTT-SSS-B---SHHHHHHHHHHHHHH CS
        NRDD   1 enanvdskslsglrlklasevskeyalkkllpkevaeaheegdiHiHDldylal.lttyClgidlkdlleeGlktgngvsrppkhietalalavnilqt 98 
                 enan+dsk++ ++r+ la+ v+k+ya++++lp++v++ahe+g+iH+HDldy ++ ++++C+ idlk +l++G+k+gn+ ++pp++i ta+a++++i+++
  EHT98540.1 116 ENANKDSKVIPTQRDLLAGIVAKHYAQQQILPRDVVQAHERGEIHYHDLDYSPFfPMFNCMLIDLKGMLTNGFKMGNAEIEPPRSIATATAVTAQIIAQ 214
                 8*****************************************************99******************************************* PP

                 HHTSSSS-EEETTHHHHHHHHHHHHHHTTSS-...............GHHHHHHHHHHHHHHHTTS-S..SSSS---EEEEEE.-HH............ CS
        NRDD  99 lqneqaGgqaissfdtylapfvrkdyekklkk...............ltkkeikqamqefvynlntlpsrrGaQvpFtninlgldtptegrfeekliik 182
                 ++++++Gg +++++d +lap+v+k++ ++ +                +t+ke+++a+q++ y++ntl++++G Q+pF+++ +gl+t++ +r    l++ 
  EHT98540.1 215 VASHIYGGTTLNRIDEVLAPYVEKSFARHKEVaqhwnipqaeayarqRTEKECYDAFQSLEYEVNTLHTANG-QTPFVTFGFGLGTSWAAR----LVQT 308
                 *************************999988899**************************************.******************....**** PP

                 .HHHHHTTTTS-HCH----SEEEEEEEEETETTH.....HHHHHHHHHHTTT--EEE........EEES--GGGTT-------....-...S---EEEE CS
        NRDD 183 allevmleGdgnkgtpftFPilifklkedfnleeedpnydlfklalevtakrgfpyffnlle.dlepedekevasmgCRlrld....eg.erlggrgsl 275
                 ++l+ +l+G+g++++ + FP+l+f+++e++n +++d nyd+ +lal +++kr++p+  n+ +  +  ++ k  ++mgCR++l     +g + ++gr ++
  EHT98540.1 309 SILRNRLAGLGKNRKTAVFPKLVFAIREGVNRRPGDVNYDIKQLALACASKRMYPDILNYDQvVKVTGSFK--TPMGCRSFLGvyeeNGeQIHEGRNNI 405
                 ************866666***************************************99987545555544..9*********764313358899**** PP

                 EEEEEEHHHHHH..HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH.HTTSS-G.E................EEEEEEE-HHHHHHHTTEE CS
        NRDD 276 gvvtiNlprlaleakgdeekffelLdellelakealeerrkilekllakglpflmgkgylks.r.kkkdeveevlkng..tltiGfiGlaEalkaltgk 370
                 gv+++Nlpr+alea+gde +f++lLd++l lak+al++r  +lek++a+ +p+l+ +g++ + r + +dev+++++ng   l++GfiGl+E+l+al g 
  EHT98540.1 406 GVISLNLPRIALEARGDEARFWALLDDRLMLAKRALMTRVARLEKTKARVAPILYMEGAC-GvRlQADDEVGSIFRNGraSLSLGFIGLHETLNALSGA 503
                 ************************************************************.668899***********99****************999 PP

                 EE....-HHHHHHHHHHHHHHHHHHHHHHHHHSS-EEEEE---TTHHHHHHHHH..HH...........HHG-SSSS-TTSSB-HHHHHHHHHHHTGGG CS
        NRDD 371 kig..eseeakefalkvlkhmrekadelkeetglnfsleatPaEslsgrfakldkkkfgeipgv.dkepyYtNsfhvpvdekislfekikleaefqklt 466
                 +++  ++ + ++ ++ ++ ++r ++d++k etg+ fsl++tP+E+l++rf++ld  +fg+++gv dk+ yYtNsfh++v++k++++eki++ea++ +l+
  EHT98540.1 504 SVHpfDDATLRAKGVAIVARLRAATDAWKAETGYGFSLYSTPSENLCDRFCRLDAAEFGVVKGVtDKG-YYTNSFHLDVEKKVNPYEKIDFEAPYPPLS 601
                 9974458888999*******************************************************.****************************** PP

                 TT-S-EEEEBSS--SSHHHHHHHHHHHHHTT--EEEEE--EEEETT.--EESS......SB-TTT--BE...EEEEEESSSSEEEHHH..HHHHHHHHS CS
        NRDD 467 tGGailyieldeekknpealeklvkiakktgigYfsinpkidvCnecgykgei......ekCpkCgseee..vevirRitGYlrpvss..wnkgkkaEl 555
                 +GG+i+y e+++ ++n++ale+++++ ++ +++Y+++n++id C +cg++ge+      ++Cp+Cg++++  v+v+rR++GYl++ ++  +n+gk++E+
  EHT98540.1 602 NGGFICYGEYPNVQHNLKALEDVWDYSYD-RVPYYGTNTPIDECYDCGFNGEFtctsrgFTCPNCGNHDParVSVTRRVCGYLGSPDArpFNAGKQQEV 699
                 **************************999.*****************************99********9***************9999********** PP

                 GG---B CS
        NRDD 556 kdRvkh 561
                 ++Rvkh
  EHT98540.1 700 QRRVKH 705
                 *****9 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.8   9.9e+03      36      84 ..     206     255 ..     200     259 .. 0.77
   2 !   94.7   0.0   1.2e-30   4.4e-27       2     104 ..     582     685 ..     581     687 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
                  TTECCCCHHHHHH.HCC-CCCCCCHHCCCCCCT-SECEEEEETCCCHCCC CS
  Gly_radical  36 slnlkavpdalgk.eeeerienlatlldgyfeggfhlnvnvvsretLldA 84 
                    ++++  ++  + ++ + ++ + ++l  y+e+ f    +v + + +++A
   EHT98540.1 206 AVTAQIIAQVASHiYGGTTLNRIDEVLAPYVEKSFARHKEVAQHWNIPQA 255
                  56777888888888888889999999999998888777777777777776 PP

  == domain 2  score: 94.7 bits;  conditional E-value: 1.2e-30
                  TSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHH.HCC-CCCCCCHHCCCCCCT-SECEEEEETC.CCHCCCCCSCGGGCCEEEE CS
  Gly_radical   2 apganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgk.eeeerienlatlldgyfeggfhlnvnvvsr.etLldAqehpekypqltiR 97 
                  ++++np+e++d+e+p++ l+ +++++y  +++++++nlka++d++++ +++  + +++t++d+++++gf+++++++sr +t++++++h++   ++t+R
   EHT98540.1 582 EKKVNPYEKIDFEAPYPPLSNGGFICY-GEYPNVQHNLKALEDVWDYsYDRVPYYGTNTPIDECYDCGFNGEFTCTSRgFTCPNCGNHDPARVSVTRR 678
                  689************************.********************************************************************** PP

                  SSSSEEE CS
  Gly_radical  98 VsGYavn 104
                  V+GY++ 
   EHT98540.1 679 VCGYLGS 685
                  ****987 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.1   7.7e-24   2.8e-20       2      85 ..       4      89 ..       3      90 .. 0.94
   2 ?   -0.0   0.0      0.38   1.4e+03      31      64 ..     202     235 ..     182     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 7.7e-24
                EEE-TTS-EEE--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHIIT..-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH CS
    ATP-cone  2 kViKRdGtvepfdvekIkraiekAcegseeeideiaeeveaevrkrlrdg..isteeIqdlvektliehpdyavaaayilyrnlrk 85
                +ViKRdG +++fd ++I++a+++A+++ + +  + ++ v+ +v  +l+d   +++++Iq  ve+tl++ p++++a+ayi yr++r+
  EHT98540.1  4 VVIKRDGCRVSFDAQRIAAAVMAAARAANVDDAAWCDAVAGQVSAQLVDRqdVDIQDIQCAVEETLMAGPYPQLARAYIAYRHDRD 89
                69*************************9999999999999999999888889********************************98 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHH CS
    ATP-cone  31 eeideiaeeveaevrkrlrdgisteeIqdlvekt 64 
                 +++ +++++++a+v + ++ g +   I+++++ +
  EHT98540.1 202 ATATAVTAQIIAQVASHIYGGTTLNRIDEVLAPY 235
                 4577889999999999999999999999988655 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   5.1e-05      0.18      15      44 ..      70      99 ..      68     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.1e-05
     DUF4051 15 vvgyichlkRycrAfRqdRDAllEarnkly 44
                + g +  l R + A+R+dRD   E r++l+
  EHT98540.1 70 MAGPYPQLARAYIAYRHDRDVERERRSQLH 99
                566677899***************998875 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.3   4.6e+03      48      64 ..       7      23 ..       5      27 .. 0.81
   2 ?   10.5   2.3   0.00013      0.45      30      56 ..     643     669 ..     634     684 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
  OrfB_Zn_ribbon 48 kCpnCgfeadrDvnAai 64
                    k++ C +++d++  Aa 
      EHT98540.1  7 KRDGCRVSFDAQRIAAA 23
                    5677********99986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
  OrfB_Zn_ribbon  30 tCseCgsknkealsgrtfkCpnCgfea 56 
                     +C  Cg +++ + ++r f+CpnCg + 
      EHT98540.1 643 ECYDCGFNGEFTCTSRGFTCPNCGNHD 669
                     7***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5302.42
//
Query:       EHT98541.1  [L=791]
Description: beta-hexosaminidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-99  333.5   0.1    8.5e-98  328.0   0.1    2.1  1  Glyco_hydro_20   Glycosyl hydrolase family 20, catalytic doma
      2e-15   57.7   0.1    2.3e-14   54.2   0.0    2.6  3  Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
    2.7e-08   34.6   0.1      8e-08   33.0   0.0    1.8  2  Glycohydro_20b2  beta-acetyl hexosaminidase like


Domain annotation for each model (and alignments):
>> Glyco_hydro_20  Glycosyl hydrolase family 20, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.0   0.1  1.4e-101   8.5e-98       1     353 [.     157     583 ..     157     584 .. 0.86

  Alignments for each domain:
  == domain 1  score: 328.0 bits;  conditional E-value: 1.4e-101
  Glyco_hydro_20   1 fkyRGlmlDvaRhflsveeikrliDamaaaKlNvlHwHltDdqgwrleikkyPeLtekgakreskeseeelsgfYtkedireiveYAaergieVi 95 
                     f++RG+++D+aRhf+++ +ikr+iD +aaa++NvlHwHltDdqgwr++ ++yP+L++ ++++           fYt+e++r++v+YAaerg++V+
      EHT98541.1 157 FAWRGILIDSARHFMPIRTIKRQIDGIAAARMNVLHWHLTDDQGWRFASSRYPQLQQNASDGL----------FYTQEEMRDVVQYAAERGVRVV 241
                     99********************************************************88777..........********************** PP

  Glyco_hydro_20  96 pEidmPgHaraalkaypelvtkekaeqsveqsvqvevkesvlnptneetyeflekvldevaelfpseyvHiGGDEvkkkqwkkspeiqalikeeg 190
                     pE+d PgHa+a ++a+pel++       +++++ ++v++++l+p+ne++y++++ ++ eva +fp+ yvHiGGDEv  +qw++s++iq++++++g
      EHT98541.1 242 PELDFPGHASALAVAMPELISA---PGPYRMERGWGVFKPLLDPSNEQVYQVIDALIGEVAAIFPDPYVHIGGDEVDPSQWQASSRIQQFMHDRG 333
                     ********************99...4579999*************************************************************** PP

  Glyco_hydro_20 191 lksveelqsyfvkrvekilkekgkkligWdeilekgkasklakknttvqsWrelekeaaeklakkgydvilspadalYlDfgqekkeeeegleia 285
                     l++ ++lq+yf++r+ekil++++++++gWdei++ +      ++++++qsW++  ++a+ ++ak+gy+ ils+   +YlD +q ++  ++ +ei 
      EHT98541.1 334 LADSHALQAYFNQRLEKILEKHQRHMVGWDEIAHPDL-----PHSILIQSWQG--QDALGTVAKNGYRGILST--GFYLDQPQPASY-HYRNEIY 418
                     ************************************8.....888********..679**************8..7*****999555.5555555 PP

  Glyco_hydro_20 286 t...................faslekv.................................................................... 293
                     +                   f                                                                          
      EHT98541.1 419 PqglegkdviqpgdqaqswsF-----Smprlkgspvtgsftlikgrdgwrgfidfagksrrlvkgiawlapdrltfevdtwmgpfqpvvtltgnq 508
                     566777777666655555550.....055555666666666667777777777777777777777777777777777777788888888888888 PP

  Glyco_hydro_20 294 ................ynyepvakeaastslseeekkkkilGveaalWtEvirdsaeleyrvfPRlaalAErlWsk 353
                                      + ++v+   +    ++ +k++++lG+eaalW+E++ +s+ ++++++PR++ +AErlWs+
      EHT98541.1 509 lsgymrvgnvryategRRLDAVPAGIQPVLPDARQKQQNLLGGEAALWAENV-NSTIIDTKLWPRAFVVAERLWSA 583
                     888888888665555555555555555444455555579*************.9********************97 PP

>> Glyco_hydro_20b  Glycosyl hydrolase family 20, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   3.8e-18   2.3e-14       3     124 .]      24     154 ..      22     154 .. 0.87
   2 ?   -3.3   0.0       2.6   1.5e+04      90     105 ..     212     227 ..     196     246 .. 0.62
   3 ?   -0.1   0.0      0.26   1.5e+03      19      45 ..     678     704 ..     669     722 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 3.8e-18
  Glyco_hydro_20b   3 aviPePqeveaqege..falgsevtivveeaadeat.adllaevlkaatgirlt...eakepgkgdirllalkd...aelgaEgYrLavdedti 87 
                       ++P+Pq+ve+ + +  ++l+ ++t+ +e + ++ +  ++l ++ + +tg+ l    +a +p ++ +++ +++d   +   +E+Y+L+v+ d++
       EHT98541.1  24 PLMPWPQQVEQPANAgwLTLTPQLTLRIEGDRLPGAeTRWLSRIAR-QTGWPLLpidQAVTPPTIRVQIATVTDpipQPDSDESYQLNVNSDGV 116
                      589*******9777668*************9998883567888888.******977667777788888777777899***************** PP

  Glyco_hydro_20b  88 tiegkdtdGlfyGvqTLrqllpqa.aggtlpaveirDy 124
                       +++ ++ G++ G++TL+ql+++  +g+++p v+i+D+
       EHT98541.1 117 LLRATTRFGAMRGMETLLQLIENTpEGTRIPWVTIQDK 154
                      *********************9985556*********5 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
  Glyco_hydro_20b  90 egkdtdGlfyGvqTLr 105
                      + + +dGlfy  + +r
       EHT98541.1 212 QQNASDGLFYTQEEMR 227
                      5556666666544444 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.26
  Glyco_hydro_20b  19 algsevtivveeaadeatadllaevlk 45 
                      al ++v + +e+ +d+a+a ++++ l+
       EHT98541.1 678 ALEKQVALLIEDRTDPAAATAIRAQLQ 704
                      688999*************99999987 PP

>> Glycohydro_20b2  beta-acetyl hexosaminidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       2.2   1.3e+04       1      18 [.      25      42 ..      25      50 .. 0.74
   2 !   33.0   0.0   1.3e-11     8e-08      98     137 .]      99     136 ..      79     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.2
  Glycohydro_20b2  1 lwPaPteytigsktlrls 18
                     l+P+P+++++  +  +l 
       EHT98541.1 25 LMPWPQQVEQPANAGWLT 42
                     68*****99866666554 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 1.3e-11
  Glycohydro_20b2  98 ltlevdEsYtLsvksasgsakisansvlGalhGLeTlqQL 137
                       + ++dEsY+L+v  +s+ + + a + +Ga++G+eTl QL
       EHT98541.1  99 PQPDSDESYQLNV--NSDGVLLRATTRFGAMRGMETLLQL 136
                      37799********..5558********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5589.24
//
Query:       EHT98542.1  [L=76]
Description: hypothetical protein CKS_4926 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 581.93
//
Query:       EHT98543.1  [L=336]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-38  130.6   2.6    1.1e-37  129.9   0.3    2.3  2  Peripla_BP_3   Periplasmic binding protein-like domain
    5.3e-31  108.1   0.2    9.1e-31  107.3   0.0    1.4  2  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    5.1e-21   74.2   1.1    5.1e-21   74.2   1.1    1.9  2  LacI           Bacterial regulatory proteins, lacI family
      5e-12   45.9   0.0    1.2e-11   44.7   0.0    1.7  1  Peripla_BP_4   Periplasmic binding protein domain
    2.2e-05   23.8   0.5     0.0033   16.8   0.3    3.2  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.023   14.7   0.0    1.6  1  HTH_3          Helix-turn-helix
      0.019   15.3   0.3      0.091   13.1   0.0    2.2  2  HTH_31         Helix-turn-helix domain
      0.024   14.4   0.0       0.14   12.0   0.0    2.3  2  HTH_23         Homeodomain-like domain
      0.042   13.0   0.7          1    8.5   0.1    2.2  2  HpcH_HpaI      HpcH/HpaI aldolase/citrate lyase family
       0.05   13.8   0.0       0.16   12.2   0.0    1.8  1  HTH_17         Helix-turn-helix domain
      0.052   13.3   0.2       0.11   12.3   0.2    1.5  1  MerR           MerR family regulatory protein
      0.072   13.3   0.0       0.18   12.0   0.0    1.7  1  DUF3853        Protein of unknown function (DUF3853)
      0.074   13.5   0.0        0.2   12.1   0.0    1.7  1  HTH_26         Cro/C1-type HTH DNA-binding domain
      0.092   12.5   1.1       0.43   10.4   0.1    2.5  2  HTH_38         Helix-turn-helix domain
      0.094   12.4   0.0       0.16   11.7   0.0    1.3  1  SAND           SAND domain
       0.13   12.4   0.1       0.34   11.1   0.1    1.7  1  Trp_repressor  Trp repressor protein
        0.2   11.6   0.5        1.4    8.9   0.0    2.5  3  HTH_Crp_2      Crp-like helix-turn-helix domain
       0.22   11.1   0.5        1.6    8.3   0.1    2.4  2  HTH_24         Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.95   9.5e+02      26      49 ..      29      52 ..      14     123 .. 0.66
   2 !  129.9   0.3   1.1e-40   1.1e-37       1     166 []     168     329 ..     168     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.95
                  HHHHHHHHHHHHTTSSS-EEEEE- CS
  Peripla_BP_3 26 sderergfrqaleelglplnetvv 49
                  sd  +++++qa+e+l++ +n+   
    EHT98543.1 29 SDSSRQAVNQAMESLQYHPNANAR 52
                  555666666666666555554433 PP

  == domain 2  score: 129.9 bits;  conditional E-value: 1.1e-40
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.........HHHHHCC-SEEEEESSCCHHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.ll...qalklaalPtAviaasDelAlgvlqal 93 
                   ++hL++lGh++iafi+  + ++ s +++r++g+ +alee+glp+n+++va+ +p++ ++ +a+  ll   +++      tAv +++D++A+g+l++l
    EHT98543.1 168 TRHLIQLGHQNIAFIC--STHTISDAEDRLQGYYDALEEHGLPCNDRLVAWGEPDEVGGEQAMTeLLgrgRNF------TAVACYNDSMAAGALAVL 256
                   68**************..999999**************************************99432444444......9***************** PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                    + g++vPe  s+igfdd  ++++++P lTtvr p+ +++++aael l+l  +++ +pe+++  +p+lv R+S+
    EHT98543.1 257 SDNGVQVPEAMSLIGFDDVLVSRYVRPRLTTVRYPIVTMAQQAAELALALA-HHQPVPEVTNmFSPTLVRRHSV 329
                   *****************98888***************************97.67777777777999******97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.4   4.3e+03     160     180 ..      28      48 ..      20      52 .. 0.80
   2 !  107.3   0.0   9.2e-34   9.1e-31       2     245 ..      60     301 ..      59     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.4
                   SSSSHHHHHHHHHHHHTT-TT CS
  Peripla_BP_1 160 gsndiedaaealnelleshPe 180
                    s++ ++a + ++e l+ hP+
    EHT98543.1  28 ASDSSRQAVNQAMESLQYHPN 48 
                   678888899999999999997 PP

  == domain 2  score: 107.3 bits;  conditional E-value: 9.2e-34
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvP 96 
                   ++lglv+ + ++Pff  +vk++++ a + g + ll+  g++++++  +ai++l  ++  +l++     s +++    ++ +p + l++   +     
    EHT98543.1  60 ETLGLVVGDVSDPFFGAMVKAVDEVAGQTG-NFLLIGNGYHNEQKerQAIEQLMRHRCAALVVHAKKISDSELEVLMKQ-MPGMVLVNRLLKGFEQR 154
                   789************************999.6788888888888889*****************999999999999999.88666666655554667 PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaal 193
                   c+  dd   +  +t++Li+ gh++ ia +  ++  + a+ r qG+ +al+e+Gl+  d+ va g +d  ++++a++ell ++ ++ a+ ++nd++a+
    EHT98543.1 155 CIALDDRYGAWLATRHLIQLGHQN-IAFICSTHTISDAEDRLQGYYDALEEHGLPCNDRLVAWGEPDEVGGEQAMTELLGRGRNFTAVACYNDSMAA 250
                   88888888888*************.*********************************************************9999*********** PP

                   HHHHHHHHTT.--GGGEEE.EEESSGGGHHHHTSSS--SEEEEEEE-HHHH.. CS
  Peripla_BP_1 194 GavlalkkeGrlkikeevd.sfiesvvvydgLkkaqdtilelsplaviqlpre 245
                   Ga  +l  +G ++ +e+   +++  v+v +   ++  t++  + ++++q  +e
    EHT98543.1 251 GALAVLSDNG-VQVPEAMSlIGFDDVLVSRYV-RPRLTTVRYPIVTMAQQAAE 301
                   **********.999999853567777777766.89999999999999987755 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   1.1   5.2e-24   5.1e-21       1      46 []       3      48 ..       3      48 .. 0.99
   2 ?   -3.4   0.1       8.8   8.8e+03      28      39 ..     102     113 ..     100     114 .. 0.74

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 5.2e-24
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                tikDVArlAGVS+aTVSrv+nn+++ s++ r+ V++ame l+Y+Pn
  EHT98543.1  3 TIKDVARLAGVSVATVSRVINNSPKASDSSRQAVNQAMESLQYHPN 48
                9********************************************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.8
                 HHHHHHHHHHHH CS
        LacI  28 eetrerVeaame 39 
                 ++ r+ +e+ m+
  EHT98543.1 102 QKERQAIEQLMR 113
                 567888888886 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.2e-14   1.2e-11       2     253 ..      63     306 ..      62     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.2e-14
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   g+vv d s+pff a+ ++++e a + g+   + g++  + +++ ++ie++    + +++v++   +  +  l+ ++++   +v ++++   +g    
    EHT98543.1  63 GLVVGDVSDPFFGAMVKAVDEVAGQTGNFLLI-GNGYHNEQKERQAIEQLMRHRCAALVVHAKKISDSE--LEVLMKQMPGMVLVNRL--LKGFEQR 154
                   78999*******************99997777.9***************************87765555..77777665569******..9999999 PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH..-T.TCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESS CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke..yp.gikivaevaganwdaekaqqalealltan.pldgilaan 191
                   +++ d    + l+ + l +       +++ +  + + ++ae+r++g  ++l+e   p +  +va    ++ d+  + qa+++ll +  +  ++ + n
    EHT98543.1 155 CIALDDRYGAWLATRHLIQLGH---QNIAFICSTHTISDAEDRLQGYYDALEEhgLPcNDRLVA---WGEPDEVGGEQAMTELLGRGrNFTAVACYN 245
                   9****99999999999999988...56**************************66555555555...33789999**********5545******** PP

                   CCHHHCHHHHHHHTTTTSTEE..EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvv..vtgqDatpealeaikdGtidatvaqdpyelgyaavelaval 253
                   d ma gal+ l+++g++   +  ++g+D     + +     ++ tv  +   ++++a+ela+al
    EHT98543.1 246 DSMAAGALAVLSDNGVQVPEAmsLIGFDD--VLVSRYVRPRLT-TVRYPIVTMAQQAAELALAL 306
                   ****************6555535777764..333333333333.66666666666666666665 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   3.4e-06    0.0033      27      49 ..       1      23 [.       1      24 [. 0.93
   2 ?    3.3   0.0     0.054        53      18      34 ..     226     242 ..     225     243 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.4e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  ++++k+vAr+ gvS  TV r+++
    EHT98543.1  1 MATIKDVARLAGVSVATVSRVIN 23
                  68******************997 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.054
  HTH_Tnp_ISL3  18 ayilelllesrsvkavA 34 
                   ++  ell ++r+++avA
    EHT98543.1 226 QAMTELLGRGRNFTAVA 242
                   5555666666******9 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-05     0.023      11      33 ..       3      25 ..       3      38 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
                HHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGe 33
                +++++A+++Gvs++t+sr +n+ 
  EHT98543.1  3 TIKDVARLAGVSVATVSRVINNS 25
                789******************94 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.2e-05     0.091      16      50 ..       3      39 ..       2      53 .. 0.75
   2 ?   -1.1   0.0       2.5   2.5e+03      19      56 ..     265     302 ..     252     310 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.2e-05
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrp...spavleal 50
                + ++vA+++gvs++t+sr+ +         s+++++++
  EHT98543.1  3 TIKDVARLAGVSVATVSRVINNSPK-AsdsSRQAVNQA 39
                5689***************997663.533355566665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
      HTH_31  19 evAerlgvsestlsrlEqGrrgrpspavlealaralgl 56 
                 e+  ++g+    +sr+ + r + ++   ++ + +a  l
  EHT98543.1 265 EAMSLIGFDDVLVSRYVRPRLTTVRYPIVTMAQQAAEL 302
                 56667888888899999988888877766666555555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.14      19      39 ..       3      23 ..       2      26 .. 0.92
   2 ?   -3.0   0.0       7.3   7.3e+03      29      40 ..     183     194 ..     183     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
      HTH_23 19 svreIAreLgvsrrTvyrwlk 39
                +++++Ar+ gvs  Tv+r+++
  EHT98543.1  3 TIKDVARLAGVSVATVSRVIN 23
                89****************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.3
      HTH_23  29 vsrrTvyrwlkr 40 
                 +s +T++    r
  EHT98543.1 183 CSTHTISDAEDR 194
                 788888877666 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.059        59      32      59 ..      25      50 ..      22      60 .. 0.85
   2 ?    8.5   0.1     0.001         1      60     109 ..     257     309 ..     239     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.059
                SSSHHHHHHHHHHHHHHHHHHHHCTTTS CS
   HpcH_HpaI 32 avalaeKdaARvlvsealkqldalaaaa 59
                ++  ++ d++R+ v +a+++l+++ +a+
  EHT98543.1 25 SP--KASDSSRQAVNQAMESLQYHPNAN 50
                44..7889***************98775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
                 SEEEEE-SSTTHHHHHHHGG...HHHTTSSEEEESS--SHHHHHHHHHHTSHT CS
   HpcH_HpaI  60 sevvVRvnsldselikqdle...vldlgaqvvlvPkvetaeealevvsalrep 109
                 s   V v++  s ++ +d+    +++  +++v+ P v++a++a+e+  al+ +
  EHT98543.1 257 SDNGVQVPEAMSLIGFDDVLvsrYVRPRLTTVRYPIVTMAQQAAELALALAHH 309
                 56789999999999999987789*********************998877765 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.16       3      23 ..       3      23 ..       2      26 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
      HTH_17  3 tveEaAelLgvsrstvyrlir 23
                t++++A+l gvs++tv r i+
  EHT98543.1  3 TIKDVARLAGVSVATVSRVIN 23
                9****************9886 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00011      0.11       1      16 [.       3      18 ..       3      19 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                tI++vA+l+Gvs+ t+
  EHT98543.1  3 TIKDVARLAGVSVATV 18
                8************996 PP

>> DUF3853  Protein of unknown function (DUF3853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.18      47      66 ..       3      22 ..       1      39 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
     DUF3853 47 GikglarllGislptanrik 66
                 ik++arl G+s++t++r+ 
  EHT98543.1  3 TIKDVARLAGVSVATVSRVI 22
                699***************74 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0002       0.2      11      36 ..       1      27 [.       1      32 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      HTH_26 11 i.tkseLargtgisaatlsrlvkgkpe 36
                + t++++ar +g+s at+sr  ++ p+
  EHT98543.1  1 MaTIKDVARLAGVSVATVSRVINNSPK 27
                5589********************986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00043      0.43      22      41 ..       3      22 ..       2      24 .. 0.93
   2 ?   -0.9   0.2       1.4   1.4e+03       8      17 ..     103     112 ..     102     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
      HTH_38 22 slreIArrLgrspsTIsREl 41
                +++++Ar+ g+s  T+sR +
  EHT98543.1  3 TIKDVARLAGVSVATVSRVI 22
                799***************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
      HTH_38   8 eeReeIerll 17 
                  eR+ Ie+l 
  EHT98543.1 103 KERQAIEQLM 112
                 69*****994 PP

>> SAND  SAND domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.16       3      45 ..     127     171 ..     125     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                 .SSEEEEEETTEEEEEEHHHHHS-TTS--EE-TT-..-EE-HHHH CS
        SAND   3 sskalpVtCgdakGlLykkklkqgisekCiqtedg..ewlTPkeF 45 
                 s+++l+V  +++ G+  +++l++g++++Ci  +d    wl  ++ 
  EHT98543.1 127 SDSELEVLMKQMPGMVLVNRLLKGFEQRCIALDDRygAWLATRHL 171
                 578999999**********************99977788776655 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00034      0.34      53      86 ..       5      38 ..       2      40 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
  Trp_repressor 53 reIaeelgvSiAtItRvsrsLktgsdeykavLkr 86
                   +++a   gvS+At++Rv ++  ++sd+ ++++++
     EHT98543.1  5 KDVARLAGVSVATVSRVINNSPKASDSSRQAVNQ 38
                   6789999***********9999999988888776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0015       1.4      24      43 ..       4      23 ..       2      24 .. 0.90
   2 ?   -1.4   0.0       2.4   2.4e+03      33      46 ..      31      44 ..      29      46 .. 0.87
   3 ?   -3.1   0.0       8.2   8.1e+03      38      48 ..     144     154 ..     144     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
                HHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 24 qeelAsmlGltretvsrils 43
                 ++ A++ G++  tvsr+++
  EHT98543.1  4 IKDVARLAGVSVATVSRVIN 23
                5899**************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                SSHHHHHHHHHHHH CS
   HTH_Crp_2 33 ltretvsrilseLk 46
                ++r+ v++++  L+
  EHT98543.1 31 SSRQAVNQAMESLQ 44
                69*******99987 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.2
                 HHHHHHHHHHT CS
   HTH_Crp_2  38 vsrilseLkre 48 
                 v+r+l+ ++++
  EHT98543.1 144 VNRLLKGFEQR 154
                 79999999876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0016       1.6      19      39 ..       3      23 ..       2      24 .. 0.92
   2 ?    0.1   0.0       0.6     6e+02      10      26 ..      41      57 ..      29      58 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
      HTH_24 19 sqreLAerlglSpstvnrrlk 39
                +++++A+  g+S++tv+r ++
  EHT98543.1  3 TIKDVARLAGVSVATVSRVIN 23
                89****************987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.6
      HTH_24 10 elLqknprisqreLAer 26
                e Lq +p+ + r LA++
  EHT98543.1 41 ESLQYHPNANARALAQQ 57
                56777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      785  (0.0437838); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2573.37
//
Query:       EHT98544.1  [L=757]
Description: biotin sulfoxide reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-64  217.7   0.0    3.3e-64  217.5   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    3.2e-27   94.8   0.0    8.1e-27   93.5   0.0    1.7  2  Molydop_binding  Molydopterin dinucleotide binding domain
    7.8e-17   61.0   0.0    1.7e-16   59.9   0.0    1.6  1  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0   5.5e-68   3.3e-64       1     432 []      51     508 ..      51     508 .. 0.92

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 5.5e-68
                    B--S-EEEC...........TTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTT CS
  Molybdopterin   1 RlkyPmvRk...........qargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlpp 85 
                    R+++PmvR            + rg+ +Fv v Wd+Al+l+a++++++++ yg + ++  +s+++ s+  +  +++l++++  + ++ +d++++++ 
     EHT98544.1  51 RIRQPMVRRswltsrensdrTLRGREDFVAVDWDTALDLVAEENRRIRERYGASGIF-NGSYGWSSAGRVNHARTLVRRFYFQGGGGVDQQGNYSW 145
                    99******************99*******************************9998.9************************************* PP

                    HHHH.......CHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHH....HHHHHHHHHTTC....-EEEEECSSB-H...CGGGCSEEEE CS
  Molybdopterin  86 asaq.......qtigsdsrsnyessnpledlensdliilwGsNvreerpil....narirkaalkkk....akvivigpryae...llkfadewla 163
                    ++aq        t+        ++ +p + +e++++++++G    ++++++      + +k al++     + vi i+p  ++   +     +w++
     EHT98544.1 146 GAAQfflpyvmGTYM--PLTGRVTDWPQV-VEHAEIFVAFGGLALKNAQVAsggaGQHSLKPALEQLaakgTPVINISPMRDDcpeF--VRADWIP 236
                    ******996543332..334788999999.*********************77775566666666547788************9874..499**** PP

                    EHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS......HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHH CS
  Molybdopterin 164 ikpgtdaalalamghvilqelkvdkeflrkytygkeetdmpllvtleee......tgkkkevvariarelarnaaktagksmiivGaglnhrqdgd 253
                    i+p+td+al+la+g+ i+q +  d++fl+++++g  +++ +ll+++++       ++ +++v+a+++ +la++++ ++   +i    ++++  +g+
     EHT98544.1 237 IRPNTDVALMLALGYEIYQRGATDEDFLARHCTGWPQLRAYLLGESDDIaktagwASRITAVPAERIVQLAQQLIGKRS--FITCSYSVQRAHRGE 330
                    ***********************************************99999999********************9966..*************** PP

                    HHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTTHHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.H CS
  Molybdopterin 254 aiyravinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslkeekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnp 349
                    + y+++i L  ++g+ g pg+g+    G+++  g+ ++ g  p++++ ++    +i +a     ++ ++p++  + + + l+  +++++ ++g np
     EHT98544.1 331 QPYWMMIALSSMLGQPGLPGAGFSFGHGSMNSVGNPRQEGPAPMMSTGPNPSGLSIPVARIS--DMLLNPGQPYSFQGETLHYPDIHMVHWAGGNP 424
                    *************************9998888888888888888888888887777766554..44444777777789999999************ PP

                    HHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE.EEESSS-STT-BEHHHHHHHHHHH CS
  Molybdopterin 350 evdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh.lkqavsppgeaksdwkIlkaLakk 432
                    +++h++ n++++ ++k+d+vvv d+ +t  a++aDi+LPa+t +E++d+  ++  rf   ++qa++p+  a++d++I+ +La++
     EHT98544.1 425 FHHHQQLNRLVEGWQKPDTVVVQDIVWTPAAQMADIVLPATTTLERNDIGGSSRDRFVLaMHQAIKPQHQARNDFDIFADLAER 508
                    **********************************************************************************96 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   8.9e+03      80      96 ..     418     437 ..     414     444 .. 0.69
   2 !   93.5   0.0   1.4e-30   8.1e-27       1     110 [.     624     744 ..     624     745 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
                      HCC........S-GHCTS-- CS
  Molydop_binding  80 wwe...agekggnaNaltdd 96 
                      +w+   ++ +++++N+l+  
       EHT98544.1 418 HWAggnPFHHHQQLNRLVEG 437
                      34447788889999999954 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 1.4e-30
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC........... CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe.........ag 84 
                      l++i++++ d+lhsq + + + + +k+++ e+++++pedA+a+Gi dGd++ev+++rG++ + +++t+++++Gvv++ +g+w          ++
       EHT98544.1 624 LHMISIQPSDRLHSQLDATATVQGNKTAGhETLYMHPEDANARGIVDGDEIEVSNARGRILAGVRLTDGLKQGVVIISTGAWFdpgfgnawqPF 717
                      789*************99999999999999**************************************************************** PP

                      ...S-GHCTS.--SCSTTT--CSTT-E CS
  Molydop_binding  85 ekggnaNalt.ddatdplsgtpefksv 110
                      +++gn N+lt d +t+ l+++p++ s+
       EHT98544.1 718 DRAGNPNVLTlDIGTSSLTQGPNAMSC 744
                      ***********************9988 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   2.9e-20   1.7e-16       1      41 []       7      47 ..       7      47 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 2.9e-20
  Molybdopterin_N  1 tasHWGafraevkdGkivgvrPfegDpdPspllegvpdavy 41
                     +++HWGaf+a+ ++++++g++Pf +D+dPsp+l+++p++vy
       EHT98544.1  7 HLAHWGAFTAVSENDRLIGCEPFFADADPSPMLNTIPELVY 47
                     89**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5638.58
//
Query:       EHT98545.1  [L=579]
Description: peptidoglycan synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-74  248.3   0.0    1.2e-73  248.0   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    1.2e-14   55.1   0.0    1.5e-13   51.5   0.0    2.2  1  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0   0.0   1.4e-77   1.2e-73       1     305 [.     258     553 ..     258     554 .. 0.95

  Alignments for each domain:
  == domain 1  score: 248.0 bits;  conditional E-value: 1.4e-77
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSE CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgseg 94 
                     gaav++   tge+lamas ps++pn+++g    +++n a+++ yePGSt+K+++++ +le+++++pd++ld+ ++++ g   i+d  ++      
      EHT98545.1 258 GAAVLVKIDTGEILAMASYPSFNPNNYQGaTPAQMRNTAINDSYEPGSTVKPLVVMEGLERHLVRPDSVLDTTPYRVNG-HLIRDVGHWP----R 347
                     79****************************999*****************************************98765.5599999997....6 PP

                     EEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--S..SH..HHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE- CS
  Transpeptidase  95 itlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptr..kw..legatisfgiGltvtplqlaqayaaiangGklvk 184
                     +t++ +l+kSs+++++++a +++a+ l +++ +fglG++tg++l ges G +p +  +w  +e+at+sfg+Gl vtplq+a+ ya++ + G++++
      EHT98545.1 348 LTMTGILQKSSDIGVSHIALAMPAEALVNTYYAFGLGKPTGLGLTGESVGyFPLHrtRWadIERATFSFGYGLRVTPLQIAREYATLGSYGVYRP 442
                     6*************************************************777775566************************************ PP

                     -BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SE CS
  Transpeptidase 185 PhlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpky 279
                     ++++          kv+p++l+k++ ++et+++v ++l++ v  g + ++aav+gy++a KTGTAe++g +  gk++g ++   +g+apa++p++
      EHT98545.1 443 LSIT----------KVTPPVLGKQVANPETVKEVVHMLESDVLPGGTGVKAAVPGYRLATKTGTAEKMGSS--GKYDGGYVNYTAGIAPASHPEV 525
                     ****..........79*****************************555566*****************955..55678889************** PP

                     EEEEEECTCS..SSSSCCHHHHHHHHHH CS
  Transpeptidase 280 avavlieqpk..eaaggkaaapiakkil 305
                     a++v+i++p+  ++ gg++aap++ +i+
      EHT98545.1 526 ALVVMINHPTagDHFGGSVAAPVFGNIM 553
                     ***************************9 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.7e-17   1.5e-13       3     177 ..      66     217 ..      64     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.7e-17
                 EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT-E CS
   PBP_dimer   3 papRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGin 101
                 p +RG+++Drn ++LA ++ps ++ ++p+ + +++ + +  k a l +    + +e++     +   + ++ +  + ++++   ++ ik+ + +  Gi+
  EHT98545.1  66 PTSRGTLLDRNDEALALSVPSRDVIADPQRVLESNPDFTSAKWAYLAA-ALGMRPEEVAS---QITANPKRRFLYLGRKVELGIAKDIKDLKLK--GIS 158
                 778**************************9988887777555554442.45577777777...788899999*****************99865..*** PP

                 EEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCE CS
   PBP_dimer 102 ievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrile 177
                    + +R Yp +e  a+++G vg+                  + G +GlEk +++ L+G+ Gk+ ++ da G+i++
  EHT98545.1 159 EVYDDSRFYPMSEASAPLIGIVGAD-----------------NTGLNGLEKGFDKVLQGQPGKEVYRQDAAGNIIS 217
                 ***********************98.................89******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4110.60
//
Query:       EHT98546.1  [L=397]
Description: lysophospholipid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-17   62.2  41.3    3.8e-17   62.2  41.3    1.9  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.1    8.9  10.9        2.6    7.8   0.1    3.0  3  UNC-93    Ion channel regulatory protein UNC-93


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2  41.3   4.3e-21   3.8e-17       2     348 ..      18     352 ..      17     357 .. 0.74
   2 ?   -1.9   3.8      0.14   1.2e+03     147     174 ..     365     392 ..     339     397 .] 0.47

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.3e-21
       MFS_1   2 llaaflsalarsilgpalplalaedlg..ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll.fasslwlllvlrvlqG 96 
                 ++a+f+sa++ ++l++a   +l++++   +s  ++++   l+ ++++++++++G ++d +   r ++++  l +lg +++++ f ++    +++  l G
  EHT98546.1  18 IVAQFFSAFGDNALLFATLALLKNQFYpdWSQPVLQM---LFVATYILLAPFVGQMADSIAKGRAMMFANSLKLLGaMVICFgF-NP----FLGYTLVG 108
                 6788999999888888877699999986677777666...6667999*************888899999999999944444444.55....789999** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav..fyilaivsllafv..lfllllpeepperkrkspkeeekgt 191
                 +ga+a+ pa + ++++++++e+  +a+gl+ a++ ++++lg ++gg+l+    W++v    ++a+ +++a+v  lf+  l++ +p  +++  + +    
  EHT98546.1 109 IGAAAYSPAKYGILVEIAHGEKLVKANGLMEASTIAAILLGSVAGGILS---DWHLVaaLAACALTYAVAVVanLFIPRLRAARPGQSWNVAAML---- 200
                 *************************************************...6666632666677777766633322222333333333333333.... PP

       MFS_1 192 gpaplvpawkallkdpvlw.......illialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrllla 280
                          + l++ + lw       +ll ++l++++g+++   l+ ++p+     lg+s    + ++l ++ +vg    +++++l+ +l    + l  
  EHT98546.1 201 --------GRFLRATRLLWnnaetrfSLLGTSLFWGAGVTLrflLVLWVPV----ALGIS-DNKTPTMLNAMVAVG---IVVGAALAAKLVTLETVLRC 283
                 ........4666666666677766656666666666555555555555555....89999.467774455555555...567888889999999***** PP

       MFS_1 281 llllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlapp.eeagtasglfntagslg 348
                 +++++l+ ++++++a+ ++ + ++l+l++iG+ +gf++++l+al+++   +   ag a+++ n++ + +
  EHT98546.1 284 MPAGVLIGVMVVIFALQHTLLNAYLLLMIIGVLGGFFVVPLNALLQERGQQsVGAGNAIAVQNLIENTA 352
                 *****************888888889999*****************99843123446666666666555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.14
       MFS_1 147 slgWravfyilaivsllafvlfllllpe 174
                  +g +av   +++ +l+a+ + ll+l++
  EHT98546.1 365 RAGAPAVATGIGFGALFALAITLLWLWR 392
                 3344444333333333333333344444 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.6   0.00075       6.7      74     143 ..      85     151 ..      47     158 .. 0.68
   2 ?    7.8   0.1   0.00029       2.6      42     105 ..     167     233 ..     160     241 .. 0.75
   3 ?   -1.2   0.3      0.16   1.4e+03      72      98 ..     289     315 ..     258     325 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00075
      UNC-93  74 allyaifqlgFlllnkyylyissallGvgaallwtgqGsyLsenstretiernssilwallksslliGgi 143
                 +l  +  ++  + +n    +++ +l+G+gaa++  ++   L+e ++ e+  +  +++ a + +++l+G++
  EHT98546.1  85 SLKLLGAMVICFGFNP---FLGYTLVGIGAAAYSPAKYGILVEIAHGEKLVKANGLMEASTIAAILLGSV 151
                 3333333333334444...56668**********************************999999999976 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00029
      UNC-93  42 slaiiyavftvanlvapsvvdlltakwalvigallyaifqlgFllln...kyylyissallGvgaal 105
                 + a++yav +vanl++p + ++ +++   v+++l   +     l  n   +++l+ +s + G+g++l
  EHT98546.1 167 ACALTYAVAVVANLFIPRLRAARPGQSWNVAAMLGRFLRATRLLWNNaetRFSLLGTSLFWGAGVTL 233
                 689*****************99999988888887766555555555533235666677777777765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.16
      UNC-93  72 igallyaifqlgFlllnkyylyissal 98 
                 + +++ +if l + lln y+l++   +
  EHT98546.1 289 LIGVMVVIFALQHTLLNAYLLLMIIGV 315
                 334566788888888898887754433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3004.45
//
Query:       EHT98547.1  [L=83]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   20.8   0.5    0.00023   20.8   0.5    1.0  1  4HB_MCP_1  Four helix bundle sensory module for signal transd
  ------ inclusion threshold ------
       0.06   13.3   2.0      0.062   13.2   2.0    1.0  1  TarH       Tar ligand binding domain homologue


Domain annotation for each model (and alignments):
>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.5   2.6e-08   0.00023       2      82 ..       1      81 [.       1      83 [] 0.94

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.6e-08
   4HB_MCP_1  2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellk 82
                +++ ++L l+f+lla  lii+G+v l  l   ++ +e +  + + ++k l+ + ++ ++l  +l+++  ++++ + + l++
  EHT98547.1  1 MNMTQRLSLAFSLLAGSLIILGIVTLSLLAGFQARFEYVQVNTIDSLKVLNRLVDESNRLSVALYRHQTEDESGKLASLEA 81
                7899***************************************************************99999888777765 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.0   6.9e-06     0.062       9      75 ..       5      68 ..       1      81 [. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-06
                XXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        TarH  9 trLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaa 75
                 rL l+  ll+  l++ g++ ls l   + +++ v+ n + +   L+   ++  + +++L+r     
  EHT98547.1  5 QRLSLAFSLLAGSLIILGIVTLSLLAGFQARFEYVQVNTIDSLKVLNRLVDESNRLSVALYR---HQ 68
                69***********************************************************9...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 637.46
//
Query:       EHT98548.1  [L=108]
Description: hypothetical protein CKS_4935 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 865.55
//
Query:       EHT98549.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT98549.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT98549.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT98549.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.33
# Mc/sec: 3596.09
//
Query:       EHT98550.1  [L=360]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-46  157.4  32.9    4.2e-45  153.6  18.2    2.6  2  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    5.2e-05   23.4  24.0      0.048   13.9   0.0    4.6  6  DUF948         Bacterial protein of unknown function (DUF948)
    8.5e-05   22.9   0.8    8.5e-05   22.9   0.8    4.3  5  HAMP           HAMP domain
    0.00018   21.5  12.8      0.058   13.4   3.2    2.9  2  DUF1664        Protein of unknown function (DUF1664)
     0.0015   17.3   2.1     0.0015   17.3   2.1    2.1  2  Tweety         Tweety
  ------ inclusion threshold ------
      0.018   15.2   0.3      0.018   15.2   0.3    2.9  2  Nup54          Nucleoporin complex subunit 54
       0.03   14.8   9.5      0.034   14.7   2.2    2.2  2  APG6_N         Apg6 coiled-coil region
      0.076   12.7   4.9      0.061   13.0   1.3    2.1  2  DUF4559        Domain of unknown function (DUF4559)
       0.16   10.8  12.4       0.43    9.4   2.1    2.1  2  Spc7           Spc7 kinetochore protein
       0.24   10.3  11.7       0.27   10.1   1.6    2.1  2  IFT57          Intra-flagellar transport protein 57
       0.62   10.6  34.0       0.39   11.2   8.3    4.7  4  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
        2.6    7.3  21.5        1.5    8.1   8.1    2.5  2  DUF3450        Protein of unknown function (DUF3450)
        3.6    6.9   5.1        5.4    6.4   0.8    2.1  2  PTPA           Phosphotyrosyl phosphate activator (PTPA) prot
        4.1    7.9   8.1        2.6    8.6   0.1    3.2  4  Spectrin       Spectrin repeat
          5    7.1  25.5       0.71    9.9   5.7    3.9  4  Laminin_II     Laminin Domain II
        9.2    6.2  17.9        2.3    8.1   1.9    3.9  4  Sec8_exocyst   Sec8 exocyst complex component specific domain


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   6.9     0.001       1.1     104     170 ..      53     120 ..      33     133 .. 0.60
   2 !  153.6  18.2   3.8e-48   4.2e-45       2     172 .]     134     290 ..     133     290 .. 0.98

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.001
                 ......HHHHHHHHHH.HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 104 dsvesleetrqrveeg.selveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 d v ++  + +r  e+ s+ +    +a +++++a a++a+  ++++a +eeq+as+e+++ +++++++
  EHT98550.1  53 DEVGVMARSYNRLMESiSSAMYAVSSASQSVSSASAQIAAGNEDLSARTEEQAASLEQTAASMTQISE 120
                 44555555544443330333334444555566666777777777777777777777777777777654 PP

  == domain 2  score: 153.6 bits;  conditional E-value: 3.8e-48
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 +lae++++  e++   +  ++++m +i++s+ ++ dii+ i++ia+QTN+LALNAa+EAARAGe+GrGFaVVA+EVr+L +rs  aa+ei++li     
  EHT98550.1 134 NLAENTRNLSETSSAALTTMLDTMTSIRDSAGKVGDIITLIEGIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRNLSQRSTTAAREIKTLI----- 227
                 688999999999999*******************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          ++++  +e+g++++++ +++++++  av++v+dlv+eiaaa++eqs++i +v qav+++++vt
  EHT98550.1 228 ---------QSSNALIESGTSQADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVT 290
                 .........9***********************************************************996 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.3e-05     0.048       6      86 ..       5      85 ..       2      95 .. 0.85
   2 !    7.0   1.9    0.0062       6.9      28      88 ..      83     143 ..      81     148 .. 0.88
   3 ?    4.8   2.7     0.031        35      31      66 ..     111     149 ..      96     183 .. 0.48
   4 !    9.8   2.1   0.00085      0.96      31      80 ..     205     261 ..     170     269 .. 0.58
   5 !    6.4   6.4    0.0098        11      28      80 ..     244     296 ..     238     302 .. 0.64
   6 ?    5.1   3.0     0.023        26      33      88 ..     277     332 ..     262     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
      DUF948  6 aAiAFvvLviflivvllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86
                +A+A+  L ++ i +++++++ l+++   +e   + +d  lk  +   ++v +++   n+ +e++ + ++av  +++svs+
  EHT98550.1  5 IALAITGLGMLTILTIMRVRRSLNAMGGLMERASNTLDLSLKADDSRRDEVGVMARSYNRLMESISSAMYAVSSASQSVSS 85
                7999999************99999999999999988888888888888888888888888888888888888888888886 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0062
      DUF948  28 ldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvseln 88 
                 +++a+a+i+  ++++ + ++e ++ l+++ + + +++e + +    t ++ +l+e+ ++l+
  EHT98550.1  83 VSSASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGNTRQASNLAENTRNLS 143
                 6778889999999999999999999999999999999999999999999999999999886 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.031
      DUF948  31 aaatieele...kqvdpilkevedllakvnelledvnek 66 
                 +aa+++++    +q+ + ++++ +l +++++l e  +  
  EHT98550.1 111 TAASMTQISetvRQTAGNTRQASNLAENTRNLSETSSAA 149
                 233333332111333333444444444444433333332 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00085
      DUF948  31 aaatieelekqvdpilkevedllakvne.......lledvneklekvdplteavadl 80 
                 +a  +++l ++ +   +e+++l++ +n+        +++vn+ +e++   +++v dl
  EHT98550.1 205 VAGEVRNLSQRSTTAAREIKTLIQSSNAliesgtsQADNVNQNMETMRGAVSQVTDL 261
                 555566666666666666666666666611111115555555555555555555555 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0098
      DUF948  28 ldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadl 80 
                 ++++ +t+++  +qv+ +++e++++ ++  +  ++v++ ++++d +t++ a+l
  EHT98550.1 244 VNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVTQQNATL 296
                 44445555555577777777777777777777777777777777777776665 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.023
      DUF948  33 atieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvseln 88 
                 a++++  +q+d ++++ ++l++++ +    ++e+ + + +l+  +  +g++ ++++
  EHT98550.1 277 AQVHQAVNQMDDVTQQNATLVEEASAASLSLQEQADGLAALVRRFTLAGQQAADVT 332
                 4667777999****************999999999999999999999998887765 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.8   7.6e-08   8.5e-05       3      51 ..      20      69 ..      18      71 .. 0.90
   2 ?    2.9   0.2      0.13   1.5e+02      13      28 ..      83     100 ..      81     131 .. 0.77
   3 ?   -1.1   0.0       2.2   2.5e+03       9      22 ..     107     120 ..     103     145 .. 0.64
   4 ?   -2.2   0.0       5.1   5.7e+03      24      28 ..     211     215 ..     185     233 .. 0.54
   5 ?   -0.8   0.0       1.8     2e+03      10      27 ..     276     291 ..     258     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.6e-08
                HHTTHHHHHHHHHHHHHHTTT.BTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP  3 arrilrPLrrLaraarriaaG.dldtrlpvsgrDEiGeLarafNaMldrL 51
                + r+ r+L+ +   ++r ++  dl+   ++s+rDE+G +ar++N++++++
  EHT98550.1 20 IMRVRRSLNAMGGLMERASNTlDLSLKADDSRRDEVGVMARSYNRLMESI 69
                6788999999999999999878*************************987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.13
                 HHHHHHHHTTT..BTSST CS
        HAMP  13 LaraarriaaG..dldtr 28 
                 +++a ++iaaG  dl++r
  EHT98550.1  83 VSSASAQIAAGneDLSAR 100
                 6789999**998888888 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHTT CS
        HAMP   9 PLrrLaraarriaa 22 
                 +L++ a+++ +i++
  EHT98550.1 107 SLEQTAASMTQISE 120
                 56666677777665 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.1
                 BTSST CS
        HAMP  24 dldtr 28 
                 +l++r
  EHT98550.1 211 NLSQR 215
                 44444 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHTTTBTSS CS
        HAMP  10 LrrLaraarriaaGdldt 27 
                 + ++++a+++++  d+++
  EHT98550.1 276 IAQVHQAVNQMD--DVTQ 291
                 667777777777..6555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.9   8.7e-05     0.098      42     105 ..      75     138 ..      67     160 .. 0.84
   2 !   13.4   3.2   5.2e-05     0.058      37     115 ..     210     288 ..     204     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.7e-05
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                 av+s s+++ + s+++aa  ++Ls+r ++  ++l+++++  ++i+e v +  +++++ ++  e+
  EHT98550.1  75 AVSSASQSVSSASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGNTRQASNLAEN 138
                 7889999999999************************************999998876655544 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.2e-05
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 r+ls+  ++ +++++++ +s +a  +  +s+ d+v+++++ +  + +++++ v+e+    +e ++ + +v++av++++ 
  EHT98550.1 210 RNLSQRSTTAAREIKTLIQSSNALIESGTSQADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDD 288
                 7888888888888888888888888888999999999999999999999999999999999999999999999999985 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.1   1.3e-06    0.0015      89     185 ..      67     161 ..      57     174 .. 0.87
   2 ?    4.0   2.9     0.014        16      96     155 ..     239     297 ..     206     324 .. 0.45

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.3e-06
      Tweety  89 dGvlqltyslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselpflkkkdvsltelaeqvelvelyR 185
                 + ++ ++y++++a + +++ + ++ + +e+l+ + ee+ ++le+  a+ t++ et+r++ ++++++ + +++ ++l  +++s ++l++  +++ ++R
  EHT98550.1  67 ESISSAMYAVSSASQSVSSASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGNTRQASNLAENTRNL--SETSSAALTTMLDTMTSIR 161
                 668899********************************************************99999999999988..4555556666666555555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
      Tweety  96 yslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevv 155
                 +  +++n+ + +++  vs++++ ++e  +   t+ ++ +a+ ++ ++ +  v++q  ++v
  EHT98550.1 239 SQADNVNQNMETMRGAVSQVTDLVNEIAAAA-TEQSQGIAQVHQAVNQMDDVTQQNATLV 297
                 2233444444444444444433333322222.2222222222222222222222222222 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   1.6e-05     0.018      28      78 ..      91     139 ..      62     195 .. 0.81
   2 ?   -0.2   5.2      0.89     1e+03      38      85 ..     237     284 ..     209     335 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-05
                 EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  28 vkGFedLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekak 78 
                 + G edL+ R + Q++ ++q    +++is+ +++++   +++ ++ l++  
  EHT98550.1  91 AAGNEDLSARTEEQAASLEQTAASMTQISETVRQTA--GNTRQASNLAENT 139
                 7899*******************************9..3333333333333 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54  38 vkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvels 85 
                  + Q+++v+q  e +    +++++l ++  + ++++ + +++ h++  
  EHT98550.1 237 GTSQADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVN 284
                 444555555444444444444444444444444444444444444433 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.8     0.041        46      51      87 ..      89     125 ..      38     161 .. 0.44
   2 ?   14.7   2.2     3e-05     0.034      13     132 ..     211     327 ..     209     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.041
      APG6_N  51 eleeeleklekeeeelleeLkelekereeleaelaal 87 
                 ++    e+l++  ee  + L+++ +   ++ + +++ 
  EHT98550.1  89 QIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQT 125
                 2222222222222222222222222222222222222 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3e-05
      APG6_N  13 eldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqle 111
                 +l ++  +a +e++++ +  + l ++ +++    +++++  e ++   ++  +l++e++++ +e+++  a+++++ ++ +++ ++++  ++e ++ +l 
  EHT98550.1 211 NLSQRSTTAAREIKTLIQSSNALIESGTSQ---ADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVTQQNATLVEEASAASLS 306
                 678888899999999999999998886664...58999999********************************************************** PP

      APG6_N 112 lleleeeldsleaqyehaqnq 132
                 l+e  + l++l  +++ a +q
  EHT98550.1 307 LQEQADGLAALVRRFTLAGQQ 327
                 ******999998888777665 PP

>> DUF4559  Domain of unknown function (DUF4559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.37   4.2e+02     267     305 ..      88     126 ..      35     144 .. 0.67
   2 ?   13.0   1.3   5.4e-05     0.061     171     307 ..     155     292 ..     140     296 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.37
     DUF4559 267 keflnknkdLkenlkedvkklqeieekldkldedvtelk 305
                 +++   n+dL    +e+++ l++    + ++ e v+++ 
  EHT98550.1  88 AQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTA 126
                 344556677777777777666666666666666665554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.4e-05
     DUF4559 171 kkilrLledlktvpeleeaeeaieellkilkqefeislkeddevrvl.tdvllslqklkeleeellkedatkldelvlraeeqkiskeellkelqvlke 268
                 ++++ + +   +v+++ ++ e i   ++il  + ++++ +  e     + v  ++++l+++ + +++e  t +++     e+ + +  ++ +++++++ 
  EHT98550.1 155 DTMTSIRDSAGKVGDIITLIEGIAFQTNILALNAAVEAARAGEHGRGfAVVAGEVRNLSQRSTTAAREIKTLIQSSNALIESGTSQADNVNQNMETMRG 253
                 555555555446666666666666444555555555555533333330334568999***********999999999999******************* PP

     DUF4559 269 flnknkdLkenlkedvkklqeieekldkldedvtelkkk 307
                  + +++dL +  ++ ++++ +   +++++ +++ +++++
  EHT98550.1 254 AVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVTQQ 292
                 ***********9999998888888999999999998887 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.1   0.00038      0.43     200     280 ..      75     159 ..      33     164 .. 0.68
   2 ?    6.9   2.9    0.0023       2.5     151     260 ..     227     293 ..     203     337 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00038
        Spc7 200 eLeelreelaelkaeieekkkelaelqeq....leeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkalee 280
                  + ++ +++++++a+i++ +++l+ ++e+    le+ ++++++++e  +++  ++++a ++ e++++ se+   +l++ ++++ +
  EHT98550.1  75 AVSSASQSVSSASAQIAAGNEDLSARTEEqaasLEQTAASMTQISETVRQTAGNTRQASNLAENTRNLSETSSAALTTMLDTMTS 159
                 4556666667777776666666655554411115555666666666666677777889999999999999888888888877765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0023
        Spc7 151 leedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee 249
                 +++ ++l+e+  +++d++ +++                                           e  +  ++++++ ++e++++ +e ++ +++++++
  EHT98550.1 227 IQSSNALIESGTSQADNVNQNM-------------------------------------------ETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQA 282
                 2222222222222222222222...........................................2222222222222222222222222222222222 PP

        Spc7 250 iaeaervleec 260
                 +++ ++v++++
  EHT98550.1 283 VNQMDDVTQQN 293
                 22222222222 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.6   0.00025      0.27     205     317 ..      35     145 ..      34     169 .. 0.79
   2 ?    5.3   3.0    0.0072       8.1     241     323 ..     217     299 ..     204     316 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00025
       IFT57 205 eRvlpqLkvtikadakdWrahleqmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvsel 303
                 eR+  +L   +kad    r ++  m +  + + es++++  +++  ++ +s +  +i +  + l  + ee+ + ++++ +++++++e ++q  ++  + 
  EHT98550.1  35 ERASNTLDLSLKAD-DSRRDEVGVMARSYNRLMESISSAMYAVSSASQSVSSASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGNTRQA 132
                 78888888888776.456889999999999999999999************************************************999988766655 PP

       IFT57 304 trelaeiseelekv 317
                 ++ lae + +l+++
  EHT98550.1 133 SN-LAENTRNLSET 145
                 54.44444433333 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0072
       IFT57 241 petksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemee 323
                 +++  ++k l +  +  +e  +s+  ++n+++e++    +++ + ++e+     + s+g+ +  +  +++++  ++  + +ee
  EHT98550.1 217 TTAAREIKTLIQSSNALIESGTSQADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVTQQNATLVEE 299
                 33344444444444444444444444455555554444444444444444444444444444444444444433333333333 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   8.3   0.00035      0.39      10      86 ..      53     128 ..      51     132 .. 0.89
   2 ?    1.7   0.3      0.31   3.5e+02      14      47 ..     134     167 ..     128     198 .. 0.72
   3 ?    9.2   2.5    0.0015       1.7       6      61 ..     203     257 ..     200     271 .. 0.67
   4 ?   -0.6   7.7       1.6   1.8e+03       8      51 ..     258     300 ..     238     332 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
  T7SS_ESX_EspC  10 dhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaa 86 
                    d++  +a  +++  + i+sa  a++ as++v+ s  +  aa n +++a  + ++a++e++aa++t++++ +r++A++
     EHT98550.1  53 DEVGVMARSYNRLMESISSAMYAVSSASQSVS-SASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGN 128
                    6789999*****************66555555.557888999*********************************86 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.31
  T7SS_ESX_EspC  14 elaakhdevaaeiasavaaaagasaavldshGpi 47 
                     la+  ++ +++ ++a+++++++ +++ ds G +
     EHT98550.1 134 NLAENTRNLSETSSAALTTMLDTMTSIRDSAGKV 167
                    5677777777777777777777777777777754 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0015
  T7SS_ESX_EspC   6 sVdpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaa 61 
                     V+++++r l+++ +++a ei+++ ++++   ++ +++   + + +  +++ a+  
     EHT98550.1 203 AVVAGEVRNLSQRSTTAAREIKTLIQSSNALIESGTSQADNVNQNME-TMRGAVSQ 257
                    599*************************6666555555444444433.33444444 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.6
  T7SS_ESX_EspC   8 dpdhlrelaakhdevaaeiasavaaaagasaavldshGpicaat 51 
                    ++d ++e aa  +e +++ia++ +a+ ++ ++v+++  ++  + 
     EHT98550.1 258 VTDLVNEIAAAATEQSQGIAQVHQAV-NQMDDVTQQNATLVEEA 300
                    45555666666666666666666666.44444444433333322 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.4     0.012        14      29      94 ..      77     142 ..      37     164 .. 0.50
   2 ?    8.1   8.1    0.0013       1.5      14      94 ..     233     317 ..     202     324 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
     DUF3450  29 vaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieei 94 
                  +a++++++   +++   ++l+a+ ++  + le++++   q ++ v++   +  +  +  e+ +++
  EHT98550.1  77 SSASQSVSSASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGNTRQASNLAENTRNL 142
                 333333344444444444444444444444444444444444444444333332222222222222 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
     DUF3450  14 l....aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieei 94 
                 l     +++d++++  e    a +q+   +++++  ++e ++ + ++++ +++++   +q + lv+++ +   sl+eq + + ++
  EHT98550.1 233 LiesgTSQADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVTQQNATLVEEASAASLSLQEQADGLAAL 317
                 3444467777888888888888888888888888888888888888888888888888888888888888888888888877665 PP

>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.077        86      25      73 ..      67     132 ..      57     175 .. 0.43
   2 ?    6.4   0.8    0.0048       5.4      16      99 ..     216     301 ..     208     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.077
                 HHHHHHHHHHT.........................T-SS-HHHHHHHHHHHHHCCCTS---SS-- CS
        PTPA  25 efisrlneavkgkklee.................eeeasesvekllklLdeleelideippeeqps 73 
                 e is+   av++++ +                  +ee+ +s+e+  + +++++e+++++  ++++ 
  EHT98550.1  67 ESISSAMYAVSSASQSVssasaqiaagnedlsarTEEQAASLEQTAASMTQISETVRQTAGNTRQA 132
                 555555555544444222222333444333433333334444444444444444444444333322 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0048
                 CCHHHHHHHHHHHHHHHHHT........T-SS-HHHHHHHHHHHHHCCCTS---SS--SSS-THHHHHHHHHHH...HHHHHHHHHS CS
        PTPA  16 kSkayadilefisrlneavkgkkleeeeeasesvekllklLdeleelideippeeqpsRfGnkafrtwhdrlee...raeelleell 99 
                 +++a ++i + i++ n+ +++ + +   ++++++e++   ++++++l++ei   ++++  G  ++ + ++++++   +  +l+ee+ 
  EHT98550.1 216 STTAAREIKTLIQSSNALIESGTSQ-ADNVNQNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDvtqQNATLVEEAS 301
                 3456677777777777777766665.678899********************99999988887777665555540004444444444 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1       0.4   4.5e+02      50     105 .]      55     110 ..      17     110 .. 0.81
   2 ?    2.1   0.5      0.24   2.7e+02      79     105 .]      84     110 ..      44     151 .. 0.58
   3 ?    8.6   0.1    0.0023       2.6      52      98 ..     218     264 ..     208     268 .. 0.89
   4 ?    0.1   0.4      0.98   1.1e+03      52      83 ..     281     312 ..     257     322 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  50 laaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqkLee 105
                 +  + +  ++l+e  ++ + +  sas+ +++  +++    e+L+++++e+ ++Le+
  EHT98550.1  55 VGVMARSYNRLMESISSAMYAVSSASQSVSSASAQIAAGNEDLSARTEEQAASLEQ 110
                 55556666667766666667778899999999999999999999999999999986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  79 eerleelnerWeeLkelaaerkqkLee 105
                 ++  +++    e+L+++++e+ ++Le+
  EHT98550.1  84 SSASAQIAAGNEDLSARTEEQAASLEQ 110
                 444444444444444444444444432 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  52 aqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaae 98 
                 ++ +++k+l + +++l+++g s+++++++ +e ++ +  ++ +l++e
  EHT98550.1 218 TAAREIKTLIQSSNALIESGTSQADNVNQNMETMRGAVSQVTDLVNE 264
                 5678999******************************9999999876 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHH CS
    Spectrin  52 aqqervkalnelaeklldeghsaseeieerle 83 
                 ++ +++++++++   l++e   as  ++e+ +
  EHT98550.1 281 QAVNQMDDVTQQNATLVEEASAASLSLQEQAD 312
                 33345555556666665555555555555555 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.2   2.2e+02      31      63 ..      53      85 ..      34      92 .. 0.76
   2 ?    3.6   6.2     0.055        61      10      60 ..      85     135 ..      75     195 .. 0.71
   3 ?    2.1   0.4      0.16   1.8e+02      26      69 ..     209     249 ..     199     254 .. 0.63
   4 ?    9.9   5.7   0.00063      0.71       3      73 ..     246     316 ..     244     328 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II 31 eklseinrsveetnekvkdankairdArrsvkk 63
                +++  ++rs ++  e +++a+ a+ +A++sv+ 
  EHT98550.1 53 DEVGVMARSYNRLMESISSAMYAVSSASQSVSS 85
                555666777777888888999999999988875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.055
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrs 60 
                 +  +++ +  ++ls+++e+  ++l++ ++s+ ++ e v++    +r+A++ 
  EHT98550.1  85 SASAQIAAGNEDLSARTEEQAASLEQTAASMTQISETVRQTAGNTRQASNL 135
                 344455666678888888888888888888888888888777777777653 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTT CS
  Laminin_II  26 lentkeklseinrsveetnekvkdankairdArrsvkkLeklap 69 
                 + n+++   +++r+   ++ +++++n  i++  ++  +++++++
  EHT98550.1 209 VRNLSQRSTTAARE---IKTLIQSSNALIESGTSQADNVNQNME 249
                 45555555444444...777777777777777777766666655 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00063
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGG CS
  Laminin_II   3 elaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLld 73 
                 ++++     +++v + ++++++   + ++ + ++++ v++++++ ++  + +++A+ ++  L+++a+ L +
  EHT98550.1 246 QNMETMRGAVSQVTDLVNEIAAAATEQSQGIAQVHQAVNQMDDVTQQNATLVEEASAASLSLQEQADGLAA 316
                 56677778899*******************************************************98865 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.9    0.0021       2.3      73     120 ..      61     109 ..      55     126 .. 0.77
   2 ?    1.9   0.6      0.17   1.9e+02      76     130 ..     110     161 ..     102     178 .. 0.54
   3 ?    3.8   0.7     0.043        48      81     131 ..     213     264 ..     206     271 .. 0.78
   4 ?    2.7   0.7     0.095   1.1e+02      68     115 ..     273     320 ..     256     326 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
  Sec8_exocyst  73 sYskilssiqesqekvselKesleeakkklstkkkeLkeln.arsakyk 120
                   sY+ +++si+++   vs   +s+++a +++ + +++L+    ++ a ++
    EHT98550.1  61 SYNRLMESISSAMYAVSSASQSVSSASAQIAAGNEDLSARTeEQAASLE 109
                   8999999999999999999999999999999999999754303444444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
  Sec8_exocyst  76 kilssiqesqekvselKesleeakkklstkkkeLkelnarsakykevieiLdaie 130
                   ++  s+++  e+v++   + ++a ++l ++  +L+e+  +sa+++ +++++ +i 
    EHT98550.1 110 QTAASMTQISETVRQTAGNTRQA-SNLAENTRNLSET--SSAALTTMLDTMTSIR 161
                   34444444444444444443333.2345555555543..4556666666666665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.043
  Sec8_exocyst  81 iqesqekvselKesleeakkklstkkkeLkelnarsakykevie.iLdaiee 131
                    q s++  +e+K  ++++++ ++   ++ +++n++  +++  ++ + d ++e
    EHT98550.1 213 SQRSTTAAREIKTLIQSSNALIESGTSQADNVNQNMETMRGAVSqVTDLVNE 264
                   47899999**************999999999999999888766513344455 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.095
  Sec8_exocyst  68 nssiasYskilssiqesqekvselKesleeakkklstkkkeLkelnar 115
                   +++ia  +++++++++ +++ + l e+ ++a  +l+++ + L  l  r
    EHT98550.1 273 SQGIAQVHQAVNQMDDVTQQNATLVEEASAASLSLQEQADGLAALVRR 320
                   678999999999999999999999999999999999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2035  (0.113503); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 2384.07
//
Query:       EHT98551.1  [L=128]
Description: reactive intermediate/enamine/imine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-45  153.0   0.7    3.7e-45  152.8   0.7    1.0  1  Ribonuc_L-PSP    Endoribonuclease L-PSP
  ------ inclusion threshold ------
      0.055   13.6   0.1       0.09   12.9   0.1    1.5  1  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.7   4.1e-49   3.7e-45       2     120 ..       8     126 ..       7     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 4.1e-49
                    TTSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSST.S- CS
  Ribonuc_L-PSP   2 eaapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelk.ea 96 
                    e+apaa++pY+q+v+ gn++++sGq+p++p+tge+  +dv +q+rq+len+ka+++aag++++d+Vk+tvF++d++dfa+vn+ y+ +f+e+k ++
     EHT98551.1   8 EKAPAAIGPYVQGVDLGNMIITSGQIPVNPATGEV-ADDVSAQARQSLENVKAIVEAAGLTVGDIVKTTVFVKDLNDFATVNATYEAFFTEHKaNF 102
                    79********************************8.9*********************************************************** PP

                    -EEEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  97 ParsaveVaaLpkgakvEIeaiav 120
                    Pars+veVa+Lpk++k+EIeaia 
     EHT98551.1 103 PARSCVEVARLPKDVKIEIEAIAL 126
                    **********************95 PP

>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     1e-05      0.09      12      55 ..       8      47 ..       1      73 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                     ------SSSS-SEEEETTEEEE--B--EETTEE--BS-BTTTB- CS
  YjgF_endoribonc 12 pkvaaalGayepyaivasflttsfqlpylqekllyvGllGddvs 55
                      k++aa+G y     ++++++ts+q+p +  +    G + ddvs
       EHT98551.1  8 EKAPAAIGPYVQGVDLGNMIITSGQIPVNPAT----GEVADDVS 47
                     689************************98654....55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1072.61
//
Query:       EHT98552.1  [L=154]
Description: aspartate carbamoyltransferase, regulatory subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-31  107.0   0.0    6.1e-31  106.5   0.0    1.2  1  PyrI      Aspartate carbamoyltransferase regulatory chain, al
    9.7e-17   60.6   1.5    1.5e-16   60.1   1.5    1.3  1  PyrI_C    Aspartate carbamoyltransferase regulatory chain, me


Domain annotation for each model (and alignments):
>> PyrI  Aspartate carbamoyltransferase regulatory chain, allosteric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   6.8e-35   6.1e-31       1      91 [.       7      95 ..       7      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 6.8e-35
                X-----SCEEEEEEEETT-HHHHHHHCT--T...TS-EEEEEEEEETTTEEEEEEEEET----HHHHHHHCCC-TT-EEEEEETTEEEEEE CS
        PyrI  1 lkvkkienGiViDHIkagkalkvlklLkldklkseekvaiiknvkskklgkKdiikiegkelseeeldklaliapnatiniIkdgevveKk 91
                l+v++i+nG+ViDHI+a+ ++k+l+l++l+++++  +++i+ n++s ++g+Kd+ikie+++l+++++++la++ap+at+n I d+evv K 
  EHT98552.1  7 LQVEAIKNGTVIDHIPAQVGFKLLSLFRLTETDQ--RITIGLNLPSGEMGRKDLIKIENTYLTDDQINQLAFYAPHATVNRIDDYEVVAKI 95
                69****************************7554..5****************************************************97 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   1.5   1.6e-20   1.5e-16       2      46 ..     103     148 ..     102     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.6e-20
                 EESSS--S-TTBGGGTTS-.-EEEE.EETTTTEEEETTT--EEEHH CS
      PyrI_C   2 iegvlkCpNpnCItnnepveskFkv.edkekvklkCkYCekeisee 46 
                 i+ vl+CpN+nCI+++epv s+F v  + ++v+lkCkYCeke+ ++
  EHT98552.1 103 IDRVLTCPNSNCISRSEPVFSSFAVkHRADEVHLKCKYCEKEFARH 148
                 889**********************999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1160.41
//
Query:       EHT98553.1  [L=311]
Description: aspartate carbamoyltransferase, catalytic subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-46  155.7   0.1    1.6e-45  154.7   0.0    1.5  2  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl
    2.9e-26   92.4   0.0    4.3e-26   91.9   0.0    1.3  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.55   10.7   0.0    2.0  2  BRCT      BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   2.7e-49   1.6e-45       1     148 []       8     148 ..       8     148 .. 0.91
   2 ?   -3.1   0.0       1.2   7.1e+03      42      71 ..     158     187 ..     151     195 .. 0.68

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 2.7e-49
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99 
                 +h++s++dls++e+e +l++aa+lk++++    ++llk+ ++a +F+e StRTr+Sfe+A++rlG++++ + + +++ l+  +kg  E+l+Dt++v+s 
  EHT98553.1   8 KHIISINDLSRDELELVLHTAARLKANPQ----PELLKHNVIASCFFEASTRTRLSFETAIHRLGASAVGFADGSNTSLG--KKG--ETLADTISVIST 98 
                 7************************9985....99*************************************88777776..788..************ PP

                 HTSEEEEEES..SHHHHHHHHHHH.SSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N 100 yvdaiviRhp..gaeeleelakya.svpviNagdgdgeHPtQaLaDlltire 148
                 yvdaiv+Rhp  ga  ++  ++++  +p++Nagdg+++HPtQ+L+Dl+t++e
  EHT98553.1  99 YVDAIVMRHPqeGA--ARLATEFSnGIPILNAGDGANQHPTQTLLDLFTLHE 148
                 **********6544..5544444469************************97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
                 EEEEESS--HHHHHHHHHHHHHTTSEEEEE CS
    OTCace_N  42 lallFeepStRTrvSfevAakrlGgkvlsl 71 
                 +a++   +  RT  S   A ++  g+  ++
  EHT98553.1 158 VAMVGDLKYGRTVHSLTQALAKFDGNRFFF 187
                 555556666788888888888877776665 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   7.2e-30   4.3e-26       2     156 ..     155     303 ..     154     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 7.2e-30
                 C.EEEEESS.TTSHHHHHHHHHHHHCT-E.EEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHH..HHHHHH CS
      OTCace   2 glkiafvGd.kknnvanslikllarlgmd.vvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekere..erlkkl 96 
                 +l++a+vGd k++++++sl+++la+++ + + ++aP++l +   + +++     +++  ++ +++ ee++ + D++y+++++     ker+  ++++++
  EHT98553.1 155 NLNVAMVGDlKYGRTVHSLTQALAKFDGNrFFFIAPDALAMPAYITDMLD----EQNIAWSRHDSFEEVMPELDILYMTRVQ-----KERLdpSEYANV 244
                 689***********************9999********888556665554....4589999*********************.....666666888888 PP

                 CC.CSB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace  97 kd.yqvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156
                 k  + + ++ l+ a+++++vlH+LP  r +E+t +V+  p + +f+qa N++++++All+l
  EHT98553.1 245 KAqFILRAADLAGARDNMKVLHPLP--RIDEITPDVDTTPYAWYFQQAGNGIYARQALLAL 303
                 877**********************..9*******************************97 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.89   5.3e+03       6      28 ..       6      24 ..       3      27 .. 0.73
   2 ?   10.7   0.0   9.1e-05      0.55       3      71 ..      38     127 ..      36     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.89
                TTTEEEEEEESTSSHHHHHHHHH CS
        BRCT  6 fhgckfvitgvldnftrdeleel 28
                 +++++ i    ++  rdele +
  EHT98553.1  6 YRKHIISI----NDLSRDELELV 24
                56677777....99999999865 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.1e-05
                 TTTTTTEEEEEEESTSSHHHHHH..HHHHHHTTCEE.....................ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEE CS
        BRCT   3 ellfhgckfvitgvldnftrdel..eelikehGGkv.....................ttevskktthlvvgepesrslkylealklnipivh 71 
                 ell h+++  +   ++  tr+ l  e+ i  +G++                       + +s+ ++ +v+ +p ++  ++ +  +++ipi++
  EHT98553.1  38 ELLKHNVIASC--FFEASTRTRLsfETAIHRLGASAvgfadgsntslgkkgetladtISVISTYVDAIVMRHPQEGAARLATEFSNGIPILN 127
                 56667777777..9999*******************999999999999888888776666677777777888899***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2591.68
//
Query:       EHT98554.1  [L=46]
Description: hypothetical protein CKS_4941 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       199  (0.0110993); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 373.69
//
Query:       EHT98555.1  [L=335]
Description: ornithine carbamoyltransferase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-55  185.1   0.1    3.8e-54  183.0   0.1    1.8  2  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b
    6.2e-48  162.6   0.0    8.9e-48  162.1   0.0    1.2  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl


Domain annotation for each model (and alignments):
>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11   9.8e+02       1      38 [.      44      84 ..      44     101 .. 0.75
   2 !  183.0   0.1   4.2e-58   3.8e-54       3     156 ..     157     330 ..     155     331 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
                CC.EEEEESS.TTSHHHHHHHHHHHHCT-EEEEES-TT..S CS
      OTCace  1 kglkiafvGd.kknnvanslikllarlgmdvvlvaPkg..l 38
                kg++ia++ +   +++  s   ++   g++v++++P g  +
  EHT98555.1 44 KGKNIALIFEkDSTRTRCSFEVAAYDQGANVTYLGPSGsqI 84
                6899999997555888888888888999********99532 PP

  == domain 2  score: 183.0 bits;  conditional E-value: 4.2e-58
                 .EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTC.CGGHHHHHHHHCCCS CS
      OTCace   3 lkiafvGdkknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmge.ekereerlkklkdyq 100
                 +++++vGd++nn+ ns+++++a +g+d+++vaP++++p+  +++e+++ a+k+gg+it+t d++e vkgaD++ytdvwvsmge ++ +eer++ l+dyq
  EHT98555.1 157 MTLVYVGDARNNMGNSMLEAAALVGLDLRMVAPQSCWPEAGLVAECRQVAEKTGGKITLTADIAEGVKGADFIYTDVWVSMGEaKAVWEERIALLRDYQ 255
                 789********************************************************************************8899************ PP

                 B-HHHHHHS-T.T-EEEE-S---BT..................TTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace 101 vteellklakk.daivlHcLPakrg..................eEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156
                 v++++l+l+ +  +++lHcLPa+++                  +Ev++eVf+s +s+vf+qaeNr+htikA++v+
  EHT98555.1 256 VNRAMLALTGNpAVKFLHCLPAFHDdqttlgrqmaeqyglkdgMEVSNEVFESAHSIVFDQAENRMHTIKAVMVA 330
                 **********99*************************************************************97 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.0   9.9e-52   8.9e-48       1     148 []       7     147 ..       7     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 9.9e-52
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99 
                 rh+l+l d++++ei++ll l+aelk+++k+ +++++lkgk++al+Fe++StRTr+SfevAa++ G++v++l+ ++ +q++     +kEs++Dtarvl+r
  EHT98555.1   7 RHFLRLLDFTPAEIDYLLALSAELKHAKKTASETQYLKGKNIALIFEKDSTRTRCSFEVAAYDQGANVTYLG-PSGSQIG-----HKESMKDTARVLGR 99 
                 8***********************************************************************.7788888.....78************ PP

                 HTSEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N 100 yvdaiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 ++d+i +R +g++ +e+la++a vpv+N++ +++ HPtQ LaDllt++e
  EHT98555.1 100 MYDGIQYRGYGQALVETLAEHAGVPVWNGL-TTEFHPTQLLADLLTMQE 147
                 ************9*****************.99**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2699.27
//
Query:       EHT98556.1  [L=140]
Description: ribonuclease E inhibitor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-33  114.3   0.2    5.5e-33  113.7   0.2    1.2  1  RraB      Regulator of ribonuclease activity B


Domain annotation for each model (and alignments):
>> RraB  Regulator of ribonuclease activity B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.2   3.1e-37   5.5e-33       2     102 .]      12     113 ..      11     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 3.1e-37
        RraB   2 eetrevldalledGddldkpreiehhfyfedeedlekfaeeleklgyevedaeede.edgeevycldlskemsldaeeIdaiteeleelaekfggeydG 99 
                 eetr ++++lledG+d+d+ ++iehh+++ +++ lek+a++++klgyev++ ee e edg++v+c+d+ +e +l+ae Ida++e+l++l++k++++ydG
  EHT98556.1  12 EETRLIIEELLEDGSDPDALYTIEHHLSCNNFDSLEKAAVDAFKLGYEVTEPEELElEDGTTVMCVDILSEGALKAELIDAQVEQLVNLVAKYNVDYDG 110
                 89************************************************************************************************* PP

        RraB 100 Wgt 102
                 Wgt
  EHT98556.1 111 WGT 113
                 **7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1088.44
//
Query:       EHT98557.1  [L=253]
Description: tRNA-(ms[2]io[6]A)-hydroxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-107  357.7   0.5   3.4e-107  357.5   0.5    1.0  1  MiaE      tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)


Domain annotation for each model (and alignments):
>> MiaE  tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.5   0.5  1.9e-111  3.4e-107       2     240 .]       6     248 ..       5     248 .. 0.99

  Alignments for each domain:
  == domain 1  score: 357.5 bits;  conditional E-value: 1.9e-111
        MiaE   2 llepvikfLkcetpeaWveqareianldvlLlDhlaCelkaaqtallllrkYavdkesedsllawlkpyeefayrkdrdie....kkeiskallaksds 96 
                 llep+++fL+c tp+aW+++ar+++nl +lL+Dhl Celkaaqta+ l+rkY++dk s+d +lawl+pye+f++r+d+d +    +k+++k+++ ++  
  EHT98557.1   6 LLEPIQQFLHCRTPQAWIDEARKPENLTLLLTDHLVCELKAAQTAVWLIRKYVADKPSGDRILAWLRPYENFIFREDGDSDfinaHKNLTKTIIVRNAL 104
                 589************************************************************************************************ PP

        MiaE  97 psakdlvdklvrlikeelehfeqvlelleaRnielakisasrYakglkaavrthepqrllDkLivgayieaRsceRlakLapyldeelakfyvsLlrse 195
                 p+a dlv+k+v+likeel+hf+qv e+++ R + ++ki++srYakgl+  v+thep++l+DkLi+gayieaRsceR+a Lap+ld+el+kfy sLlrse
  EHT98557.1 105 PWADDLVEKMVLLIKEELHHFYQVWEIMQSRGLVYEKITSSRYAKGLLREVTTHEPDTLVDKLICGAYIEARSCERFASLAPFLDSELEKFYISLLRSE 203
                 *************************************************************************************************** PP

        MiaE 196 aRhyqdYlkLaeqisdedvserveylaeveaelisspdeefrfhs 240
                 aRhyqdYl+La qis +d+ +rv+ ++e ea lis pd+e rfhs
  EHT98557.1 204 ARHYQDYLALAAQISPKDITARVRAMGEAEARLISEPDTELRFHS 248
                 ********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1882.03
//
Query:       EHT98558.1  [L=165]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-13   51.2   0.0    1.6e-13   50.9   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.3e-10   40.7   0.0    3.4e-10   40.2   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.9e-07   30.5   0.0    3.6e-07   30.2   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00013   21.8   0.0    0.00023   21.0   0.0    1.3  1  FR47             FR47-like protein
      0.001   19.2   0.0     0.0017   18.5   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.001   19.8   0.0     0.0012   19.5   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.029   14.5   0.0      0.031   14.4   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   6.1e-17   1.6e-13      18     117 .]      43     142 ..      24     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 6.1e-17
                     HHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHH CS
  Acetyltransf_1  18 daseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlY 112
                     d+ ++  +e  s e++ ++v+e+ g++ G  ++ +    +++ +++  ++  p+ rg G++++L   ++++ar++g+++ +l+++ + ++ai+lY
      EHT98558.1  43 DPNLDQLFELYSAEHSAYWVVEHQGKVMGGGGIAPLACSAPDICELQKMYFLPAIRGFGVARELALLAMDHARQRGFRRCYLETTGSLTRAIKLY 137
                     4455556677788999**********************99******************************************************* PP

                     HHTTE CS
  Acetyltransf_1 113 eklGF 117
                     e lGF
      EHT98558.1 138 ESLGF 142
                     99**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.3e-13   3.4e-10       2      75 ..      57     143 ..      56     144 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.3e-13
                     TEEEEEEEETTEEEEEEEEEEES......TCTEEEEE-GGGTTSSHHHHH....HHHTT.SEEEEEEEEETHH....HHHHHHHHTTEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld......aeitrlaVdpeyrgkGiGraL....leaae.kgiileqlelnae....kaikfYeklGFe 75 
                     ++ ++V+e++gk++G  ++++l+      +e+ +++ +p+ rg G++r+L    +++a+ +g++ +  +l+++    +aik+Ye+lGF 
      EHT98558.1  57 HSAYWVVEHQGKVMGGGGIAPLAcsapdiCELQKMYFLPAIRGFGVARELallaMDHARqRGFRRC--YLETTgsltRAIKLYESLGFA 143
                     5679**********99999998899988888888****************7755555335664322..4422223459**********6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.4e-10   3.6e-07      24     112 ..      51     148 ..      34     165 .] 0.77

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.4e-10
  Acetyltransf_10  24 erieegealllvaeeggkivGviel.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                      e  ++++  ++v+e +gk++G +++           +++ ++  p+ rg G++++L   + ++a+++g +   l+   s   a+++Ye+lGF +
       EHT98558.1  51 ELYSAEHSAYWVVEHQGKVMGGGGIaPLACsapdicELQKMYFLPAIRGFGVARELALLAMDHARQRGFRRcYLETTGSLtRAIKLYESLGFAR 144
                      334489999***********776553222245777799999*****************************99998888877************9 PP

  Acetyltransf_10 109 vgee 112
                      ++  
       EHT98558.1 145 IDHA 148
                      9543 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.2e-08   0.00023      16      82 ..      80     147 ..      74     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 9.2e-08
                 EEE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-.EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47  16 ilrkdggelgalqvlpehrrrGlgsrlvkalakeiaergkt.vllvvvasNtpsirlyeklGfekiee 82 
                 + ++d+ el  ++ lp  r+ G ++ l+     + ++rg     l +  s t++i+lye+lGf  i++
  EHT98558.1  80 CSAPDICELQKMYFLPAIRGFGVARELALLAMDHARQRGFRrCYLETTGSLTRAIKLYESLGFARIDH 147
                 6788999**********************999999**99651667788888************99976 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.6e-07    0.0017      23      59 ..      84     120 ..      63     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.6e-07
  Acetyltransf_CG  23 gvldfthTeVpeelrGkGiAkkLvkaalddareeglk 59 
                      ++ ++++ +  +++rG G+A++L+  a+d+ar++g++
       EHT98558.1  84 DICELQKMYFLPAIRGFGVARELALLAMDHARQRGFR 120
                      567788888899**********************986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.7e-07    0.0012      38     137 ..      43     142 ..       6     143 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.7e-07
  Acetyltransf_3  38 eewlerawaeeseeegygwaivlkdtgviGsvglrdleeedee.aelgymla.psfwgkGyateavralleyafeelglerlvavidkeNeaSir 130
                     +  l++ ++  s+e++  w+++++++ v+G  g+ +l  +    +el  m   p+ +g G+a+e +  ++++a ++ g +r + ++  + ++ i+
      EHT98558.1  43 DPNLDQLFELYSAEHSAYWVVEHQGK-VMGGGGIAPLACSAPDiCELQKMYFlPAIRGFGVARELALLAMDHA-RQRGFRRCYLETTGSLTRAIK 135
                     33444446666677888899954555.8*******999887668***96654499******************.7777***************** PP

  Acetyltransf_3 131 vleklGf 137
                     ++e+lGf
      EHT98558.1 136 LYESLGF 142
                     ******9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.2e-05     0.031      44     141 ..      53     149 ..      19     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
  Acetyltransf_4  44 ldsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelv 137
                     + s +   + v e +++++G   ++ +   a d   + ++y+   + +  g++rel  + ++ +++ ++++ + e+  + + +i+++++lGF   
      EHT98558.1  53 Y-SAEHSAYWVVEhQGKVMGGGGIAPLACSAPDICELQKMYFL-PAIRGFGVARELALLAMDHARQRGFRRCYLETTGSLTRAIKLYESLGFARI 145
                     4.5556667777779****999999999867777667789998.799*********************************************876 PP

  Acetyltransf_4 138 gifk 141
                         
      EHT98558.1 146 DHAL 149
                     6555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1435.15
//
Query:       EHT98559.1  [L=951]
Description: valyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-231  770.4   0.5   1.3e-230  766.8   0.5    2.0  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    4.1e-46  156.7   0.3    9.3e-46  155.5   0.3    1.7  1  Anticodon_1      Anticodon-binding domain of tRNA
    1.5e-18   66.8   0.3    1.1e-07   31.0   0.1    4.7  4  tRNA-synt_1g     tRNA synthetases class I (M)
    1.1e-17   64.0   7.3      3e-17   62.7   7.3    1.7  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
    1.4e-07   31.2   0.0    2.3e-05   24.0   0.0    2.4  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.029   13.3   0.0      0.067   12.1   0.0    1.5  1  tRNA-synt_1f     tRNA synthetases class I (K)
      0.036   14.3   5.1      0.097   12.9   5.1    1.7  1  ABC_tran_CTD     ABC transporter C-terminal domain
       0.68   10.1   3.0        1.4    9.1   1.4    2.3  3  Herpes_BLRF2     Herpesvirus BLRF2 protein
          3    7.1   6.0       0.41    9.9   0.0    2.3  3  tRNA-synt_1b     tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  766.8   0.5  6.3e-234  1.3e-230       2     602 .]      14     631 ..      13     631 .. 0.97

  Alignments for each domain:
  == domain 1  score: 766.8 bits;  conditional E-value: 6.3e-234
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  lye+We++++fk++   + ++++f+++++PP+vtGslH+Gha+++t++d++iry+rm+Gk++l++ G+DhaG+a++++ve+k++a+e+k+r+++gr++
   EHT98559.1  14 LYEHWEKQGYFKPN--GDTSQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQAGTDHAGIATQMVVERKIAAEEGKTRQDYGRDA 109
                  79************..78889***************************************************************************** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpl... 194
                  f++k+++wkae+  +i++q++rlG+svD++re++T+d++l++avkevfvrl+++ liyrgk+lvnw++kl+ta+s+lEve++++k++++h+++pl   
   EHT98559.1 110 FIDKIWQWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKENLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLang 207
                  ***********************************************************************************************665 PP

  tRNA-synt_1 195 ...adkeevklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyvdkeaGt 289
                     ad+++ +lv+aTT+PeTllgdt+vavnp+                               d+r+k+L+gk+v lplv+r ipi+ d+++d+e+Gt
   EHT98559.1 208 aktADGKD-YLVVATTRPETLLGDTGVAVNPD-------------------------------DPRYKDLIGKFVMLPLVDRLIPIVGDEHADMEKGT 273
                  55445555.***********************...............................*********************************** PP

  tRNA-synt_1 290 GvVkiaPahdedDyevgkkynlevinildedgtlteea..................aefeglkvfdarkkvveelkekglllkaekiehsvpfcersk 369
                  G+Vki+Pahd++Dyevg++++l++inil+ dg+++e+a                  a f+++++f+ark++v++++e gll ++++++++vp+++r++
   EHT98559.1 274 GCVKITPAHDFNDYEVGRRHKLPMINILTFDGDIRESAqvydtngeastvysdaipAAFQKMERFAARKAIVAAVDELGLLEEIKPHDLTVPYGDRGG 371
                  ************************************************************************************************** PP

  tRNA-synt_1 370 kpiiyrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkal 465
                  ++i++++t+qW+vr  +la+ a++ave  ++qfvpk++e++y+sw+++iqdWciSRq+wWGhrip++++++  +v+v         gr+e+e++++++
   EHT98559.1 372 VVIEPMLTDQWYVRTAPLAKVAVEAVEngDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDNDG-NVYV---------GRTEDEVRSENN 459
                  ***************************999****************************************95.5999.........788888887774 PP

  tRNA-synt_1 466 ekeakdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgse......Pfkevlvhglvr 557
                       +++      l++d+dvlD+WFsSg+w+fstlg+pe+ te l++f+p+++l++G+Dii++W+ar+i+l+++++++e      Pfk+v+++gl+r
   EHT98559.1 460 L---AADV-----ALRQDDDVLDTWFSSGLWTFSTLGWPEN-TEALRTFHPTSVLVSGFDIIFFWIARMIMLTMHFIKDEngkpqvPFKTVYMTGLIR 548
                  4...3344.....79*************************9.9***********************************999999************** PP

  tRNA-synt_1 558 deeGrKmSKslgNvidpldvik.....................................kygadalRltli.lsdvgrdinls 602
                  deeG+KmSKs+gNvidpld+++                                       g+dalR+tl+ l+++grdin++
   EHT98559.1 549 DEEGQKMSKSKGNVIDPLDMVDgisledllekrtgnmmqpqlaekirkrtekqfpngiePSGTDALRFTLAaLASTGRDINWD 631
                  *********************************************************************************96 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.3   4.7e-49   9.3e-46       1     150 [.     674     824 ..     674     826 .. 0.91

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 4.7e-49
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkra.aqevllevletllrllaPfmPfitEelwqr.eeeel 96 
                  drwil+e+n++vk ++ea+++yrf+ aa+ ly+f+wn++cdwylel+kp ++s s+++  + ++++l +vle+llrl +P++PfitE++wqr ++ + 
   EHT98559.1 674 DRWILTEFNHTVKAYREALDSYRFDIAANILYDFTWNQFCDWYLELTKPVMNSGSEAEL-RgTRHTLVHVLEALLRLAHPIIPFITETIWQRvKGLKN 770
                  9**************************************************88776444.55******************************944444 PP

  Anticodon_1  97 gkkesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsselkv 150
                   ++++iml+++p+ +a+++++++ ++++e++k+++ a+r++r+e++i+ps+ l+v
   EHT98559.1 771 ISDDTIMLQPFPQfDAAKEDADA-KADIEWMKQAIIAVRNIRAEMNIAPSKLLDV 824
                  5789********99888885555.78************************98877 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   5.3e-11   1.1e-07       7     132 ..      41     185 ..      35     195 .. 0.61
   2 !   17.8   0.0   5.6e-07    0.0011     158     247 ..     356     447 ..     340     448 .. 0.84
   3 !   10.4   0.0    0.0001       0.2     313     348 ..     539     575 ..     483     578 .. 0.81
   4 ?    0.4   0.0      0.11   2.1e+02     346     371 ..     610     635 ..     601     648 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.3e-11
                   -B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHH.....HHHTTS-HHHH.....HHHHHH.......HHHHHHHHTT---S CS
  tRNA-synt_1g   7 lpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielk.....Aekegvtpeel.....vekvhe.......eikelfkklnisfd 86 
                    p ++g+lH+Gh+ +  + D ++Ry+r++g+++l+ +gtD+ G+++++      A++eg t +++     ++k+ +       +i++++++l+ s d
    EHT98559.1  41 PPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQAGTDHAGIATQMVverkiAAEEGKTRQDYgrdafIDKIWQwkaesggTITRQMRRLGNSVD 137
                   57789**************************************998764223336677777666511111333322111111122333444333332 PP

                   ..EEEETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-G CS
  tRNA-synt_1g  87 ..kygrttseehkelvqeifkklkekgliyekeieqlycpkderflpd 132
                         t +e  +++v+e+f +l++++liy+++  + ++pk  + ++d
    EHT98559.1 138 weRERFTMDEGLSNAVKEVFVRLYKENLIYRGKRLVNWDPKLRTAISD 185
                   103333555555666666666666666666666666666666655555 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5.6e-07
                   B-E................EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET..TECCEEE-H CS
  tRNA-synt_1g 158 kleptelinpksaisgskpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP..gaekkvlYV 247
                   +++p++l+ p     g   e   t++++ +   ++k   e +e+ + +  +++ +++  +w+++ ++d++isr+l wG ++P   +++  +YV
    EHT98559.1 356 EIKPHDLTVPYGDRGGVVIEPMLTDQWYVRTAPLAKVAVEAVENGDIQfVPKQYENMYFSWMRD-IQDWCISRQLWWGHRIPawYDNDGNVYV 447
                   567777777777777777777778999999999999999999888877899***********99.*****************88455555666 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0001
                   S-EEEE--EE.E--------------HHHHHHHH-HH CS
  tRNA-synt_1g 313 kkvvaheylt.vegkKlSkSrgvvvkakealerldad 348
                   k+v+ ++ +   eg+K+SkS+g+v+++ ++++ ++ +
    EHT98559.1 539 KTVYMTGLIRdEEGQKMSKSKGNVIDPLDMVDGISLE 575
                   45566665542579***************99987755 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.11
                   -HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 346 dadllRYylaaeapekkDldfswedf 371
                    +d+lR+ laa a++ +D+++ ++ +
    EHT98559.1 610 GTDALRFTLAALASTGRDINWDMKRL 635
                   68******************998776 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   7.3   1.5e-20     3e-17       2      61 ..     885     944 ..     884     948 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.5e-20
  Val_tRNA-synt_C   2 vekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklker 61 
                       ++e +RL KeL kl+ eie++q+KLan+gFv++AP++VV +e++++a++e+ ++kl e+
       EHT98559.1 885 KAAELERLAKELVKLDVEIEKIQTKLANEGFVSRAPEAVVAKERERVADMEQSKAKLIEQ 944
                      589****************************************************99776 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0081        16      20      48 ..     214     242 ..     199     249 .. 0.83
   2 !   24.0   0.0   1.1e-08   2.3e-05      86     161 ..     247     319 ..     244     348 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0081
  tRNA-synt_1_2  20 eeklevfttrpdtlfGvtfvalapehplv 48 
                    ++ l v ttrp+tl G t va+ p+ p  
     EHT98559.1 214 KDYLVVATTRPETLLGDTGVAVNPDDPRY 242
                    4578999****************999865 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.1e-08
  tRNA-synt_1_2  86 glkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedeekkleeseeayteegi 161
                    g +++ P+ ++ ipi   ++  me gtg+v   Pahd +D+e  ++++lp++++++ +++    +es ++y ++g 
     EHT98559.1 247 GKFVMLPLVDRLIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGRRHKLPMINILTFDGDI---RESAQVYDTNGE 319
                    678899*************************************************976643...333444444332 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05     0.067     266     299 ..     537     572 ..     533     578 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
  tRNA-synt_1f 266 PekvvY..elillkggekmssSkGnvltledwleva 299
                   P k vY   li +++g+kms+SkGnv+ + d+++ +
    EHT98559.1 537 PFKTVYmtGLIRDEEGQKMSKSKGNVIDPLDMVDGI 572
                   66666632479999***************9998755 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.1   4.9e-05     0.097       8      62 ..     887     943 ..     884     946 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-05
  ABC_tran_CTD   8 releeleaeIeaLEeeiaeleaeladpelysdp..eklaelsaeleeleaeLeelye 62 
                    ele+l +e+ +L+ ei++++++la++++ s+   + +a+  ++ ++ e+  ++l e
    EHT98559.1 887 AELERLAKELVKLDVEIEKIQTKLANEGFVSRApeAVVAKERERVADMEQSKAKLIE 943
                   69****************************888655588888888888887766655 PP

>> Herpes_BLRF2  Herpesvirus BLRF2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.8   3.7e+03       7      25 ..     179     197 ..     177     224 .. 0.74
   2 ?   -2.8   0.0       3.4   6.8e+03      49      68 ..     583     602 ..     575     604 .. 0.69
   3 ?    9.1   1.4    0.0007       1.4       3      44 ..     888     931 ..     886     947 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.8
  Herpes_BLRF2   7 laaelakLkvENkaLkkkl 25 
                   l   ++ L+vEN++ k  +
    EHT98559.1 179 LRTAISDLEVENRESKGSM 197
                   5677899*****9988665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.4
  Herpes_BLRF2  49 vgrlsskaakkieervrkev 68 
                    + +  + a+ki++r +k++
    EHT98559.1 583 GNMMQPQLAEKIRKRTEKQF 602
                   45566677888888888765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0007
  Herpes_BLRF2   3 tvEdlaaelakLkvENkaLkkklkss..vspkdeeLTaaekeav 44 
                   ++E la+el+kL vE ++++ kl+++  vs  +e   a+e+e v
    EHT98559.1 888 ELERLAKELVKLDVEIEKIQTKLANEgfVSRAPEAVVAKERERV 931
                   689********************665337777777777777754 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.7   3.4e+03      15      65 ..      45      98 ..      44     116 .. 0.60
   2 ?    9.9   0.0    0.0002      0.41     164     210 ..     520     564 ..     517     572 .. 0.72
   3 ?   -0.9   0.5       0.4     8e+02     229     286 ..     885     943 ..     882     949 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
                  SSS-BGGGHHH...HHHHHHHHH.TTSEEEEEEEHHHHHTTTTT-SSHHHHHHHH CS
  tRNA-synt_1b 15 TgklHlGylvp...lkklvelqk.aghevffliaDlhAiigdpskaeerklrkre 65
                  Tg+lH G+      + ++++ q+ +g +++   +  hA i  ++   erk+ ++e
    EHT98559.1 45 TGSLHMGHAFQqtiMDTMIRYQRmQGKNTLWQAGTDHAGIATQM-VVERKIAAEE 98
                  89999997643122444445454245555555555577776666.5666666665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0002
                   HHHHHHHHHHHHHHSTTSS-EEEEET-BBSTTSSSBTTCETTCGC-B CS
  tRNA-synt_1b 164 ielgrdlarrfnkkevfkkpegltvplltgldGekKmSKSagnsaIf 210
                   i l+ + +++ n k   +   + ++ l+ + +G+ KmSKS+gn +I+
    EHT98559.1 520 IMLTMHFIKDENGKPQVPFKTVYMTGLIRDEEGQ-KMSKSKGN-VID 564
                   7788888888888833333333444499999999.********.886 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.4
                   TTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE..ESSHHHHHHHHHCCCCHHHHHHHHHHH CS
  tRNA-synt_1b 229 sdeevekllklktelsnelierleavsgkkp..kreaeellaeevtklvhggdlkkalae 286
                     +e+e+l k++++l+  +ie+++  + ++    r+ e ++a+e+++    ++ k +l e
    EHT98559.1 885 KAAELERLAKELVKLDV-EIEKIQTKLANEGfvSRAPEAVVAKERERVADMEQSKAKLIE 943
                   55689999999999**9.999988888887779999999999999998888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.91
# Mc/sec: 3163.25
//
Query:       EHT98560.1  [L=152]
Description: DNA polymerase III, chi subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-41  141.8   0.0    1.6e-41  141.7   0.0    1.0  1  DNA_pol3_chi  DNA polymerase III chi subunit, HolC


Domain annotation for each model (and alignments):
>> DNA_pol3_chi  DNA polymerase III chi subunit, HolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   8.9e-46   1.6e-41       1     135 [.       1     141 [.       1     142 [. 0.97

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 8.9e-46
  DNA_pol3_chi   1 MtrvdFyll.......naedreelacrllekalragkrvlvlcedeeqlealdelLWtfepdsFlPHglagegdaaaaqpvlltadepedpngadvl 90 
                   M++++Fy+l         +++e+l+c+l+e+ +ragkrvl++cede+q+ +lde+LW+ ++++F+PH+lageg++++a pv+l++ + +  + +d+l
    EHT98560.1   1 MKNATFYVLetdasrdGLTAVEALVCDLAETRWRAGKRVLIACEDEQQAIRLDEALWQRPANAFVPHNLAGEGPRYGA-PVELAWPQRRGNSPRDLL 96 
                   9*************9999*********************************************************999.*******8555789**** PP

  DNA_pol3_chi  91 inladevpefferfervieivdgdeeakqaaRerykaykaaGyel 135
                   inl +++++f+++f++vi++v+ +e+ kq aR+rykay++ G++l
    EHT98560.1  97 INLLPQFADFATAFHEVIDFVPYEESLKQLARDRYKAYRSVGFQL 141
                   *******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1107.04
//
Query:       EHT98561.1  [L=503]
Description: aminopeptidase A, a cyteinylglycinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-123  411.4   0.1     4e-123  410.7   0.1    1.4  2  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
      5e-34  116.9   0.0    1.8e-33  115.1   0.0    2.0  2  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       0.6   5.4e+03     254     275 ..      97     116 ..      85     125 .. 0.61
   2 !  410.7   0.1  4.4e-127    4e-123       2     310 ..     186     489 ..     185     490 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.6
                    ESS-SSSSTHHHHHHHHHHTTS CS
  Peptidase_M17 254 knvgkkrragaitAalFLkefv 275
                     n+   ++ g++ A +FL e  
     EHT98561.1  97 INTL--NDTGSMEAVCFLTELH 116
                    3333..3668899999998865 PP

  == domain 2  score: 410.7 bits;  conditional E-value: 4.4e-127
                    HHHHHHHS-TTTS-HHHHHHHHHHHHTCCT.EEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SS.TTSEEEEEEEEEEEEEE-TTS CS
  Peptidase_M17   2 lardlvntpaneltpeklaeeaeelakeag.kvevevldeeeleekgmgallaVgkgSeeepprlveleykgak.ekekklalVGKGitfDtGGls 95 
                     a+dl n+p+n+++p++la++a++la++++ +++++v+ e++++e+gm+a+laVg+gS ++++ + ++eykg++ +++++++lVGKG+tfD+GG+s
     EHT98561.1 186 AAKDLGNMPPNICNPAYLASQARQLADAYSkHISTRVIGEQQMKELGMNAYLAVGAGS-HNESLMSVIEYKGNPdTDARPIVLVGKGLTFDSGGIS 280
                    699********************9755444389*************************.66************98999****************** PP

                    S--HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEEE CS
  Peptidase_M17  96 lKpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdliv 191
                    +Kp++sm+emk+Dm+GAA+v g++++vael+lp+nvv+vl  +eNm++gk+++pgdv+t+m+G+tvevlnTDaEGRLvL+Dal+y+ e+++p++++
     EHT98561.1 281 IKPADSMDEMKYDMCGAASVYGVMRMVAELNLPLNVVGVLVGCENMPDGKSMRPGDVLTTMSGQTVEVLNTDAEGRLVLCDALTYV-ERFDPEVVI 375
                    **************************************************************************************.699****** PP

                    EEE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSSTHHHHHHHHHHTTSSECGEEEEE-TT CS
  Peptidase_M17 192 dvATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrragaitAalFLkefvketpWaHlDiag 287
                    dvATLTga+v+alG++++gl+sn++ la+el +a+e++g+r+wrlp+++ey++ql+s++aD++n+g+ r +gaitAa+FL++f+++++WaHlDiag
     EHT98561.1 376 DVATLTGACVIALGHHVSGLLSNHNPLAHELISASEQSGDRAWRLPMADEYQEQLESNFADMANIGG-RPGGAITAACFLARFARKYNWAHLDIAG 470
                    *******************************************************************.999*************7799******** PP

                    TTES.BTTB.S..EE--TTHHHH CS
  Peptidase_M17 288 talkekealkkekgatGvgvrtL 310
                    ta+++     k+kgatG++v +L
     EHT98561.1 471 TAWRS----GKAKGATGRPVPML 489
                    **964....3347*******987 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0     2e-37   1.8e-33       1     126 []      19     147 ..      19     147 .. 0.99
   2 ?   -2.3   0.0      0.42   3.8e+03      48      61 ..     258     271 ..     232     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 2e-37
  Peptidase_M17_N   1 vvgvfeggklspaaekldealagllsellkegdftGkagevlvlralsgekakrvllVGLGkeeeltaealrkaagaaaralkgakvttiaval 94 
                      vvgvfe++ lsp ae+ld+ ++g++s+ll++g+++Gk g++l+l++++++ ++r+ll+G+Gke+el+++++++++++++++l++++  ++++ l
       EHT98561.1  19 VVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKVGQTLLLHHVPNILSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFL 112
                      8********************************************************************************************* PP

  Peptidase_M17_N  95 p.legknsd..ekaeaaaegallglYrfdrykskk 126
                      + l++k+++  +k+++a+e   ++lY+fd++ks+k
       EHT98561.1 113 TeLHVKGRNtyWKVRQAVETSKEALYNFDQLKSNK 147
                      *********************************87 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.42
  Peptidase_M17_N  48 sgekakrvllVGLG 61 
                      + ++a+ ++lVG G
       EHT98561.1 258 PDTDARPIVLVGKG 271
                      45668888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3660.71
//
Query:       EHT98562.1  [L=366]
Description: putative permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-72  244.0   8.4    2.3e-72  243.8   8.4    1.0  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt
      0.003   17.4   2.3      0.003   17.4   2.3    2.5  2  Claudin_2  PMP-22/EMP/MP20/Claudin tight junction


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   8.4   2.5e-76   2.3e-72       1     351 [.       5     345 ..       5     348 .. 0.96

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 2.5e-76
   LptF_LptG   1 rYilreflkpfllvllvllfllllqdllryldllvgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsEltalrsaGislgrllrpil 99 
                 rY++re+lk  l++l++ll+++++q+l+r+l+ +v++ +p   +l l+++ +p++  l+lPl+++la+l+t+grL+++sE+t++ ++G+s   l+  ++
  EHT98562.1   5 RYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPEMAQLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAM 103
                 9************************************************************************************************** PP

   LptF_LptG 100 ilalllsvlsfllnnyvvPwankkaesllseirqkspsllikpgvfikdgdg.yiiyvgsmddeggelqdvtiydlt.egkgltsiitAksgvlvksad 196
                 il+l++s++++++  ++ Pw+++  +++ ++++++  +++   g+f  ++dg ++++v++++ +   +  v++ +l  +g++++s+++A+sg+++ ++d
  EHT98562.1 104 ILMLFTSIVAAINVIWLGPWSSRYQDQVTQNAKANPGAAAMAAGQFQTSSDGnNVLFVEDVKGN--HFGHVFLAQLRpKGNARPSVVLADSGHMQQEKD 200
                 *************************************************999899999999999..79********95559****************** PP

   LptF_LptG 197 .elqlrLfngeiyevgddekkysretferyridinldpadlsteeespdelslselkekikalrseglevrryraelhkrlalplaclvfaliaaplgl 294
                   +  +L++g+++e ++    +++++f +y+  i  ++a l+ ++   d+ +ls l          ++++ +++ae+h+rl+l +++lv+al+ +pl++
  EHT98562.1 201 gSQIVTLDKGTRFEGTALLRDFRITDFINYQAYIGYKQATLDPNDV--DQAPLSTL---------YANNTPEFKAEFHWRLTLVFSVLVMALMVVPLSV 288
                 9999************9999***************99887777665..67888888.........4455667*************************** PP

   LptF_LptG 295 vkrrggrglrlliaillfvlyyvllslgkalaengvlppilaawlpnilflllglfl 351
                 v++r+gr+l++l+a+ll++++++l+s +++ + +g l p++ +w++n+ +l+l+++l
  EHT98562.1 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNLSYLALAIVL 345
                 ******************************************************987 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.3   3.3e-07     0.003      83     162 ..      61     135 ..      52     145 .. 0.74
   2 !    2.9   0.3    0.0092        82      92     129 ..     268     305 ..     251     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.3e-07
   Claudin_2  83 tsllalarfvqvlliLslvlivlavvlgllallkqsvlllkaagilfllagvlgllavvvfiesvkkvfeesfqqwmqel 162
                 ++ l l+ f ++l++L+  l     ++++ a+  ++++l+kaa il+l ++++ ++ v++ + ++ +    + +q +q+ 
  EHT98562.1  61 QLILPLSLFLAILMTLG-RLYTESEITVMHACGLSKAVLVKAAMILMLFTSIVAAINVIWLGPWSSR----YQDQVTQNA 135
                 44445556666666666.5666666777888888888****************************54....455555554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0092
   Claudin_2  92 vqvlliLslvlivlavvlgllallkqsvlllkaagilf 129
                 + + l++s++++ l vv +++ +++q ++l ++ ++l+
  EHT98562.1 268 WRLTLVFSVLVMALMVVPLSVVNPRQGRVLSMLPAMLL 305
                 66678899999999999999999999997777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2789.54
//
Query:       EHT98563.1  [L=358]
Description: YjgP/YjgQ family permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-74  250.4   6.3    2.7e-74  250.2   6.3    1.0  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.2   6.3   1.5e-78   2.7e-74       1     353 [.       7     355 ..       7     356 .. 0.97

  Alignments for each domain:
  == domain 1  score: 250.2 bits;  conditional E-value: 1.5e-78
   LptF_LptG   1 rYilreflkpfllvllvllfllllqdllryldllvgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsEltalrsaGislgrllrpil 99 
                 rYi ++++ ++ll+l++l+ l  +++++++l++ +++ ++  d+  ++l+++p+ +e+++P+a+Ll++ll +g+La++sEl+++++aG+ +++++++++
  EHT98563.1   7 RYIGKTIFNTILLTLFMLVSLSGIIKFVDQLRKTGQGAYSALDAGYYTLLSVPKDIEIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVM 105
                 9************************************************************************************************** PP

   LptF_LptG 100 ilalllsvlsfllnnyvvPwankkaesllseirqkspsllikpgvfikdgdgyiiyvgsmddeggelqdvtiydltegkgltsiitAksgvlvksadel 198
                 ++a+ l++l++++ ++v+P++++ a++++++++   +    ++g++ kdg+  +iy+++++ +++ + +v iy +++ ++l+++ +A+s++++k+  ++
  EHT98563.1 106 KTAIPLVLLTMAIGEFVAPQGEQMARNFRAQQLYGGALVSTQNGLWAKDGN-SFIYIERIKGDDE-IDGVSIYNFNDARRLENVRYAASAKWDKD--KK 200
                 ***************************************************.***********88.*********999***************87..** PP

   LptF_LptG 199 qlrLfngeiyevgddekkysretferyridinldpadlsteeespdelslselkekikalrseglevrryraelhkrlalplaclvfaliaaplglvkr 297
                  + L+++   +++d++ + + ++    ++++nl+p +l     +pd+ls+s l+ + k+l+++g+e  ryr+  ++++++pl++ v++l+a+++ + + 
  EHT98563.1 201 LWVLSQVDESNLTDPK-QITGSQSLGGEWKTNLTPDKLGVVALDPDALSISGLYDYSKYLKQSGQESGRYRLNMWSKIFQPLSVAVMMLMALSFIFGPL 298
                 *************987.8888888899***********************************************************************6 PP

   LptF_LptG 298 rggrglr.lliaillfvlyyvllslgkalaengvlppilaawlpnilflllglflll 353
                 r+  +   ++ +i +++l+yvl++++  l+  + lppi++a+lp+++f++++lf+l 
  EHT98563.1 299 RSVSMGVrVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFVFFAISLFMLV 355
                 66554444**********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2693.46
//
Query:       EHT98564.1  [L=116]
Description: hypothetical protein CKS_4951 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-13   47.9   0.0    3.8e-05   23.3   0.0    2.1  2  SH3_2     Variant SH3 domain
    1.3e-08   34.5   1.4      0.001   18.9   0.1    2.1  2  SH3_9     Variant SH3 domain
    7.1e-07   28.7   0.4    8.2e-05   22.1   0.0    2.1  2  SH3_1     SH3 domain
     0.0016   18.2   0.3     0.0016   18.2   0.3    2.6  2  SH3_4     Bacterial SH3 domain
  ------ inclusion threshold ------
      0.041   14.2   2.7       0.11   12.8   0.2    2.1  2  SH3_3     Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.4e-08   5.2e-05       4      53 ..       7      56 ..       4      59 .. 0.84
   2 !   23.3   0.0     1e-08   3.8e-05      12      55 ..      72     112 ..      65     114 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
                ESS-B-SCGCCB--B-TTEEEEEE..EEEECTTE.EEEEECCCEEEEEGCG CS
       SH3_2  4 aiedyvgedkseLsfkkGdvikvlslgskdsdgw.wegevgGrvGlfPssl 53
                +i+ yv++++++L  ++Gd ++v+s  +  ++gw w+   gG+ G++P ++
  EHT98564.1  7 VIKRYVSAYPDPLFVEAGD-VAVVSHCDLAWRGWlWIILPGGKAGWAPQQY 56
                7999***************.899844444788**666666********997 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1e-08
                 GCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEE CS
       SH3_2  12 dkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslve 55 
                 +  eL+   G+ + v+    ++ ++w+++e+  G  G++P ++ +
  EHT98564.1  72 SAQELTVSPGEQVSVT----TSLNDWYWAERaSGECGWVPGECIR 112
                 56789999********....*********************9986 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.9e-07     0.001       1      47 [.       7      56 ..       7      57 .. 0.93
   2 !   15.0   0.1   4.7e-06     0.017      10      48 ..      73     111 ..      69     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.9e-07
       SH3_9  1 AlypyepreddeLsLqrGDvitviee..sedgWlegsl.tGrtGlvPany 47
                ++++y+   +d L +++GDv +v+++  ++ gWl  +l +G+ G+ P++y
  EHT98564.1  7 VIKRYVSAYPDPLFVEAGDVAVVSHCdlAWRGWLWIILpGGKAGWAPQQY 56
                78999999999*************77688********************9 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4.7e-06
       SH3_9  10 ddeLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyv 48 
                 ++eL +++G+ + v     ++W+ +++ +G+ G+vP  ++
  EHT98564.1  73 AQELTVSPGEQVSVTTS-LNDWYWAERaSGECGWVPGECI 111
                 689***********988.799*99**99********9987 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0049        18      11      47 ..      16      53 ..       8      54 .. 0.83
   2 !   22.1   0.0   2.3e-08   8.2e-05      10      47 ..      72     107 ..      69     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0049
                TTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEE CS
       SH3_1 11 sdELsfkkGDviivleksed..gWwkgrlkgtgkeGliP 47
                +d L  + GDv  v++ + +  gW+   l g gk G+ P
  EHT98564.1 16 PDPLFVEAGDVAVVSHCDLAwrGWLWIILPG-GKAGWAP 53
                5666678899999999888899**9999998.69***99 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 2.3e-08
                 STTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1  10 esdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +++EL+  +G+++ v    +d W+ +++ + g+ G++P
  EHT98564.1  72 SAQELTVSPGEQVSVTTSLND-WYWAERAS-GECGWVP 107
                 589**************8888.*******8.6****** PP

>> SH3_4  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   2.6      0.12   4.3e+02      20      51 ..      20      54 ..      17      57 .. 0.65
   2 !   18.2   0.3   4.5e-07    0.0016      14      50 ..      70     107 ..      68     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
       SH3_4 20 yleaGvpvrvvackgnWcr...vrDadGatGWiyq 51
                ++eaG ++ v  c+  W+    +   +G  GW+ q
  EHT98564.1 20 FVEAGDVAVVSHCDLAWRGwlwIILPGGKAGWAPQ 54
                57777788888887666532223337788888776 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 4.5e-07
       SH3_4  14 kaavi.ayleaGvpvrvvackgnWcrvrDadGatGWiy 50 
                 ++++   ++ +G  v+v+++ ++W+ ++ a G++GW+ 
  EHT98564.1  70 TYSAQeLTVSPGEQVSVTTSLNDWYWAERASGECGWVP 107
                 5667778999**************************96 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3     0.086   3.1e+02      36      53 ..      39      56 ..      21      58 .. 0.79
   2 ?   12.8   0.2     3e-05      0.11      18      53 ..      77     110 ..      70     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.086
       SH3_3 36 WykvrtddgteGwvssgy 53
                W+ +  ++g+ Gw+  +y
  EHT98564.1 39 WLWIILPGGKAGWAPQQY 56
                77777999*****99888 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3e-05
       SH3_3  18 tlpyGekVevleetgggeWykvrtddgteGwvssgy 53 
                 t+++Ge+V+v+ + ++  Wy  +  +g+ Gwv + +
  EHT98564.1  77 TVSPGEQVSVTTSLND--WYWAERASGECGWVPGEC 110
                 799*************..**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 915.25
//
Query:       EHT98565.1  [L=382]
Description: acetylornithine deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-29  102.0   0.0    4.3e-29  101.7   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.7e-21   75.5   0.0    4.6e-21   74.8   0.0    1.3  1  M20_dimer      Peptidase dimerisation domain
    5.8e-05   22.9   0.0    9.7e-05   22.1   0.0    1.3  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   7.2e-33   4.3e-29       2     205 ..      81     377 ..      80     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 7.2e-33
                    EEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEEEE CS
                    xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdavfe 96 
                    + +HlD+Vp ++  +w++ pf   +  +klyGrG++dmk+ v+a++ a+ +++++ i++   +v+l+++ EE+g++Ga+al++++    +v a   
     EHT98565.1  81 FTGHLDTVPLGNA-DWQHdPFGEIVG-DKLYGRGSSDMKAAVAAFAVACVTHQQA-IRQGSGVVMLITGGEETGCDGARALIDSVD-LPEVGA--- 169
                    78*******4444.6*********66.9*********************997777.77666**********************887.679999... PP

                    EEEESSSBTCHSTETEEEE............................................................................. CS
                    xxxxxxxxxxxxxxxxxxx............................................................................. RF
  Peptidase_M20  97 lhieepgileagklaigvv............................................................................. 115
                    l+++ep+ +      + ++                                                                             
     EHT98565.1 170 LIVGEPTANY-----PVIGhkgalwlrcetrgktahgampelginaiylaadalgkiqhfspgaphplmkqptlnvgrivgglninsvpdhtqfdv 260
                    77**999999.....55558899************************************************************************* PP

                    .......................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH...TTTEEEEEEESSG.GCTT CS
                    .......................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx.xxxx RF
  Peptidase_M20 116 .......................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarff...agiptvmifgpgs.glaH 183
                                           +v+v+ l + ++v ++ ++++++ + + ++ l++   ++ + + + tda+ +   +g p ++i+gpg+ ++aH
     EHT98565.1 261 dirsapnlqhatirqqlttllgdSVTVTTLVDLPAVLSEdNQAWIQSVYQHCQPLHNAPLTPRIVP-YFTDASLLlpaLGNPPCIILGPGEpSMAH 355
                    **********************88****9999999999999*************976445555777.********97766677779****88**** PP

                    STTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 184 spnEyvdledlekgikvlarll 205
                    + +E++ l+ l+++  ++ +l+
     EHT98565.1 356 QTDEHCLLSRLAEAEVLYGALI 377
                    **********999887777766 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   7.7e-25   4.6e-21       1     103 [.     182     283 ..     182     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7.7e-25
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeiee 99 
                 ighkG+++ +++++gk +H+++p+ g+NAi+++a++l ++++  ++ a+   ++++tlnv+ i gG ++n++pd++++ +diR  p+ +++++++++++
  EHT98565.1 182 IGHKGALWLRCETRGKTAHGAMPELGINAIYLAADALGKIQHF-SPGAPHPLMKQPTLNVGRIVGGLNINSVPDHTQFDVDIRSAPNLQHATIRQQLTT 279
                 69****************************************9.55567999*********************************************99 PP

                 HHTS CS
   M20_dimer 100 ilek 103
                 +l++
  EHT98565.1 280 LLGD 283
                 9875 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-08   9.7e-05       1      86 [.      65     162 ..      65     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.6e-08
                    EEEEEESTTCESEEEEEEEE--B-TTT.............TCC..T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHH CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvg.............rgp..ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkaf 81 
                    N++a+l+g+++  +l +++H+D+v+ g               +     G  D  + vaa      + + +  r   gv++l++++EE g+ G++a+
     EHT98565.1  65 NLMASLPGRQPGPQLGFTGHLDTVPLGnadwqhdpfgeivG-DklYGRGSSDMKAAVAAFAVACVTHQ-QAIRQGSGVVMLITGGEETGCDGARAL 158
                    899*******7779************999998777777641.24556699999888888765555555.56699********************** PP

                    HHHHC CS
  Peptidase_M28  82 akakp 86 
                    + ++ 
     EHT98565.1 159 I-DSV 162
                    9.544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3087.04
//
Query:       EHT98566.1  [L=251]
Description: hypothetical protein CKS_4953 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.9e-110  366.3   0.4   7.8e-110  366.1   0.4    1.0  1  GATase1_like  Putative glutamine amidotransferase


Domain annotation for each model (and alignments):
>> GATase1_like  Putative glutamine amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.1   0.4  4.4e-114  7.8e-110       1     246 [.       4     248 ..       4     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 366.1 bits;  conditional E-value: 4.4e-114
  GATase1_like   1 kvllvGeswvssathikGfdqftsvkyeegaklllealkdseyevtympaheaaekfPatleglaaydaiilsdiGsntlllspatflesksvPnrl 97 
                   k+llvGesw+s+++h+kGfdqf+++++++ga+ +++al ds+y +tympah aa++fP t +gl+++daiilsdiG+ntlll+p+t+l+s+++ nrl
    EHT98566.1   4 KILLVGESWTSTSVHVKGFDQFATATWHNGATDFMAALADSDYAITYMPAHAAATEFPLTPAGLQQWDAIILSDIGANTLLLHPDTWLKSQRTANRL 100
                   89*********************************************************************************************** PP

  GATase1_like  98 kllkdyvaeGggllmvGGylsfqGidgkarykktpvedvlPvtcldvddrvevPeGlaaevvasehpvlkglssewPkllGyneveakdnaevlatv 194
                    l++dyva+Gg+l+m+GGy+sfqGi+g ary++t+ve+vlPv cl +ddr+e PeG+ ++v++ +h++ + ++++wP llGyneve++++ ++lat+
    EHT98566.1 101 TLIHDYVAAGGALMMIGGYFSFQGINGGARYHNTAVEKVLPVRCLAWDDRIETPEGAYPSVTE-SHALFTDMPGDWPWLLGYNEVEMHPEGKLLATI 196
                   ************************************************************999.9******************************** PP

  GATase1_like 195 sedshPllvvGeygkGrtaaftsdisphwlspefldwegyarlwknvldwlt 246
                   +++shPll+v ey++Gr++++tsd+s hwl+ ef++w gy +lw n+ldwlt
    EHT98566.1 197 AGTSHPLLAVREYQQGRSLVWTSDMSAHWLPQEFAQWPGYRQLWINCLDWLT 248
                   **************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2045.77
//
Query:       EHT98567.1  [L=359]
Description: aryldialkylphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-67  227.6   0.0    2.6e-67  227.4   0.0    1.0  1  PTE       Phosphotriesterase family


Domain annotation for each model (and alignments):
>> PTE  Phosphotriesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.0   1.5e-71   2.6e-67       3     297 ..      30     357 ..      28     358 .. 0.95

  Alignments for each domain:
  == domain 1  score: 227.4 bits;  conditional E-value: 1.5e-71
                 GGCTSCEEEEE-SCEE-HHHHCHCCCCC--HHH...........................HHHHHHHHHHHHHHTTEEEEEE---CCCT--HHHHHHHH CS
         PTE   3 tsdlGvtLahehltitldefkqnvpealevedk...........................evaaiieellelkarGvdalveltttglgRdvqtlkrva 74 
                 +s++GvtL+heh+ ++ ++   + p++ ++                              +v  +ieel +++a G++++v+ t++g+gRd + l+r+a
  EHT98567.1  30 VSEMGVTLMHEHILLDASGKWVP-PCCCGDRHLaempvsienlgelslnplisrdncqlfDVDLAIEELMKFRALGGETVVDPTNIGIGRDPKALQRIA 127
                 5899************9996665.56666444479**************************************************************** PP

                 CCHSSEEEEEECB--CCG--TCCCCS-CHCHHHHHHHHHHT-STTTS--EEEEEEEE-CTBS-HHHHHHHHHHHHHHHHH---EEEEEGCCTTCHHHHH CS
         PTE  75 eetgvnivaatGfYvdatvpeaararsveeltdvlvdeiehGidgteikaGiikeigtsgkltpseekvleavaqahkqtGaPisihtsaslragleql 173
                 + tg+ni+ +tG+Y +  +p+ +++ s+e l+d l+ ++    +  e+ aG+i+eig s ++tp eek l+a+ +a + t +P+ +h     r g  +l
  EHT98567.1 128 RLTGLNIIMSTGLYLEPSHPDWVKTISIEALADKLIYDLGGREEKPEVLAGLIGEIGVSSRFTPNEEKSLRAAGRASAATRMPVEVHLPGWERLGHRVL 226
                 ***************************************999999******************************************999999****** PP

                 HHHHHTT--GGGEEETTGG.CS--HHHHHHHHHTT-EEEE--TT-TT........TS-HHHHHHHHHHHHHTT-GGGEEE-----SEECCCSCCCCCHH CS
         PTE 174 rilqeeGvDlsrvvvghld.tktdvkellelidlGaYleyDlfgvdl........ispdekRirivhalvdrGyedrillshDittkfralkkelvgya 263
                  il+eeG+Dl +vv+ h++    d+ +  +l++ Ga+leyD++g+           + de+  r +  l+d G+ ++ills+D+  k  + +++++gy+
  EHT98567.1 227 DILEEEGADLRHVVLCHMNpSFADKRYQRDLAQRGAFLEYDMIGMSYyyadesaqSPSDEENARAIRELIDDGFIEQILLSQDVFLKTMLTRYGGHGYG 325
                 *******************8888********************8777666666767789999************************************9 PP

                 TTHHHHTHHHHHHHTT--HHHHHHHHTHHHHHHH CS
         PTE 264 ydllltdviPklkqrGlteeqldkiLvenPkqil 297
                 y+l  ++++P+lk++G++ eql+++L+ nP++++
  EHT98567.1 326 YIL--KHFVPRLKRHGVSGEQLETLLIANPQRVF 357
                 988..9**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2705.50
//
Query:       EHT98568.1  [L=336]
Description: permease component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-46  157.4  42.7      4e-46  157.4  42.7    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.23   4.1e+03     134     146 ..      30      42 ..      16      48 .. 0.52
   2 !  157.4  42.7   2.2e-50     4e-46       3     267 ..      55     319 ..      53     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.23
  BPD_transp_2 134 ivllalllvlavl 146
                   i+l+++++++++ 
    EHT98568.1  30 IALFFVFCCVVFS 42 
                   2234444443333 PP

  == domain 2  score: 157.4 bits;  conditional E-value: 2.2e-50
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvglt 99 
                   ln+++++a+l+i+A +++lv+  +G+i+l++g+ +al + ++a++l++++ +++++ll +ll+ga+vg+++g+ +++ +++ +i+tl++l v++g++
    EHT98568.1  55 LNIIRQSAPLLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGALVGAINGFFIAYEGIPAFIVTLATLAVVRGVA 150
                   79*******************.*************************************************************************** PP

  BPD_transp_2 100 lllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGal 196
                   l     it+g+  +   + +++f g     ++ + +l+ ++++++ +++l+++rfGr + a+g n e ar +Gin+k v++++++isg+ A+laG++
    EHT98568.1 151 L----LITQGYSIPIPADSPFAFMGRAWVLGVPMPALIGIVVLIVGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMI 243
                   *....4555555444444444444444444444445************************************************************* PP

  BPD_transp_2 197 lalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   ++++lgs++ n g g+++++iaavvlG +      g+++gt++Gal i+++++ +l l +i++ ++++ +g +++l+
    EHT98568.1 244 ITARLGSGSSNQGEGFELQVIAAVVLGSTslfggfGTVIGTLLGALSIAIIQN-GLILSHISPFYTQIATGTIILLA 319
                   *****************************************************.********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2489.07
//
Query:       EHT98569.1  [L=193]
Description: ABC transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-13   49.2   0.0    1.1e-12   48.7   0.0    1.2  1  ABC_tran    ABC transporter
    7.9e-06   25.9   0.0    9.4e-06   25.6   0.0    1.1  1  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
    7.9e-05   22.2   0.0    9.4e-05   22.0   0.0    1.2  1  SMC_N       RecF/RecN/SMC N terminal domain
    0.00061   18.7   0.2     0.0048   15.8   0.2    1.9  1  ABC_ATPase  Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.3e-16   1.1e-12      55     137 .]      14     113 ..       4     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.3e-16
                 HHCCHCEEEE-SS--S-TTSBHHHH....................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  55 eslrkeigvlpqepqlfpeltvren....................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllD 133
                  s r +i+++ q+ +l +++ v+ n                    ++ +++ ++l+ lg++  +dt++    ++LSgGq+q +a+ara + +pk+l++D
  EHT98569.1  14 DSRRCHIEMVYQDLSLCDTVDVAGNlfmgrepmksilgipfldeeKMHADAREMLKGLGISI-PDTRL--LVRNLSGGQRQAIAIARAAAFDPKVLIMD 109
                 577889************************************99999999*********988.55555..48*************************** PP

                 STTT CS
                 xxxx RF
    ABC_tran 134 Epta 137
                 Epta
  EHT98569.1 110 EPTA 113
                 **97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   9.4e-06     231     297 ..      79     142 ..      38     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.1e-09
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  l +r+lS G+++++a++ a + ++   ++l+ DEp + L  + ++ +lel+++ s++g+ vil TH
  EHT98569.1  79 RLLVRNLSGGQRQAIAIARAAAFDP---KVLIMDEPTAALAVAEVEAVLELIRRVSARGVSVILITH 142
                 4566788*******88888888877...9************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.1e-08   9.4e-05     126     213 ..      67     159 ..      10     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.1e-08
                 HHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC-SCEEEEEE CS
                 xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr.eemlekadklvgvtk 213
                 +l+  gis+        +LSgG+++ +a+a      +++p+ l ++De  aaL  ++v++v el+++ s + + +i i++r ++++  +d+++ ++ 
  EHT98569.1  67 MLKGLGISIPdtrllvrNLSGGQRQAIAIARA---AAFDPKVL-IMDEPTAALAVAEVEAVLELIRRVSARgVSVILITHRlQDLFLVCDRIMVMYE 159
                 44444444444444444********9999876...56788765.89********************88876699******94556677787777665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.1e-06    0.0048     313     413 ..      75     159 ..      58     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
                 --STTEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEE CS
  ABC_ATPase 313 kdttkfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilm 411
                    t+   ++ SG   qA +i++a   + k+l++DE t+A             v  e e++    +++r++ +  gvs+il++  ++d++ v d++++m
  EHT98569.1  75 IPDTRLLVRNLSGGQRQAIAIARAAAFDPKVLIMDEPTAALA-----------V-AEVEAVL---ELIRRV-SARGVSVILITHRLQDLFLVCDRIMVM 157
                 555667788999*************************99943...........2.3344555...555555.556*********************999 PP

                 ET CS
  ABC_ATPase 412 ee 413
                  e
  EHT98569.1 158 YE 159
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1438.90
//
Query:       EHT98570.1  [L=340]
Description: periplasmic binding protein/LacI family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-40  136.9   0.2    1.7e-37  129.3   0.1    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    9.7e-39  133.5   0.0    1.8e-38  132.6   0.0    1.4  2  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      2e-14   53.8   0.0    2.9e-14   53.3   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
      5e-14   51.8   0.0    3.9e-12   45.8   0.0    2.4  2  LacI          Bacterial regulatory proteins, lacI family
    0.00016   21.6   0.1    0.00041   20.4   0.1    1.6  1  HTH_3         Helix-turn-helix
    0.00022   21.5   0.3      0.028   14.8   0.0    2.8  2  HTH_31        Helix-turn-helix domain
     0.0051   16.6   0.0      0.018   14.8   0.0    2.0  1  HTH_IclR      IclR helix-turn-helix domain
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.32   10.5   0.0    1.5  1  PsiB          Plasmid SOS inhibition protein (PsiB)
       0.15   12.5   0.1       0.31   11.5   0.1    1.5  1  HTH_26        Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.008        16       2      64 ..      60     119 ..      59     150 .. 0.76
   2 !  129.3   0.1   8.7e-41   1.7e-37       2     165 ..     177     336 ..     176     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.008
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH... CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal 64 
                   ++L + G  +++++   +d ++++  e+ +++++a++++g+ l  ++++++++ + + +r  l
    EHT98570.1  60 RRLSKGGSETLGLVL--PDITNPFFAELADAAEEAASAHGYSLVLCLTRNHPDKESQFIRW-L 119
                   677888899999999..888899*******************9999998887766666554.4 PP

  == domain 2  score: 129.3 bits;  conditional E-value: 8.7e-41
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalreag 97 
                   e L+++Ghr+iaf+g  g++++ + +er++gf+ a+ ++gl +++ +v+  +++ +   ++al  ++l    ++PtAv+aasD+l lg+l  lr++g
    EHT98570.1 177 ENLIAAGHRHIAFVG--GPDELMSVRERYQGFCTAMTQAGLHVPPEWVMYGEYQRE-FGEQAL--ERLfSRDERPTAVFAASDYLVLGLLDGLRARG 268
                   789************..************************999999888877544.334444..566544449*********************** PP

                   --TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  98 lrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   l+ Pe ls++gfdd + a +++P ++t+rqp++elGr+a+ ++l+ l+++ a+p +++lp e+v R+S
    EHT98570.1 269 LTAPEALSLVGFDDATYADFTQPRISTIRQPARELGRTAVHIMLRILNDDLAVPAETRLPVEWVARDS 336
                   *******************************************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.8   3.6e+03      27      49 ..      26      48 ..      11      55 .. 0.46
   2 !  132.6   0.0     9e-42   1.8e-38       2     277 ..      68     333 ..      67     335 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.8
                  HHHHTEEEEEEE-SSHHHHHHHH CS
  Peripla_BP_1 27 akehgvdvlllaageeedlakai 49
                   +++  ++++l+++  + +++ai
    EHT98570.1 26 VSRYMNQSIMLPQETIDRIEAAI 48
                  23344444444444445555555 PP

  == domain 2  score: 132.6 bits;  conditional E-value: 9e-42
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvP 96 
                   ++lglvlp+ ++Pff++l  ++++aa++hg+ ++l  + +++d + + i+ l + ++dgl+ +t  ++   +++k+      +++l++ i     vP
    EHT98570.1  68 ETLGLVLPDITNPFFAELADAAEEAASAHGYSLVLCLTRNHPDKEsQFIRWLDTCQVDGLLFTTNHPD-KGLLRKEINrHQRIVLLDEDIPGS-VVP 162
                   689******************************************999********************.666666666599999999986555.9** PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindea 191
                    v+ d+ q g  +t++Lia+gh+  ia ++gp+    ++er qGf+ a+ +aGl v   +v  g  ++e +++al+ l+++   P+  a+ a +d  
    EHT98570.1 163 KVFADNVQGGRIATENLIAAGHRH-IAFVGGPDELMSVRERYQGFCTAMTQAGLHVPPEWVMYGEYQREFGEQALERLFSRDerPT--AVFAASDYL 256
                   ************************.*************************************************************..********* PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEEEETTTHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvllipvkflk 277
                   +lG   +l+++G l ++e+      s+v++d    a+   + ++ + +i  p+++lGr+a   +l + n + ++p++++ pv++++
    EHT98570.1 257 VLGLLDGLRARG-LTAPEAL-----SLVGFDD---ATYADFTQPRISTIRQPARELGRTAVHIMLRILNDDLAVPAETRLPVEWVA 333
                   ************.*******.....8888776...59999**************************99***********9998765 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.5e-17   2.9e-14       2     255 ..      71     316 ..      70     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.5e-17
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEE.ECSTT-H.HHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvv.gdaenda.aeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   g+v++d +npff ++ +++eeaa + g++ ++    +++d  ++ +  +++    +vdg++ + ++++     l k  +++  +v  d d    g++
    EHT98570.1  71 GLVLPDITNPFFAELADAAEEAASAHGYSLVLClTRNHPDKeSQFIRWLDTC---QVDGLLFTTNHPDKG--LLRKEINRHQRIVLLDED--IPGSV 160
                   799*************************999986666666656666666666...******999999653..466666666789******..99*** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTTT.ECEEEESS CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltanp.ldgilaan 191
                   +  v +dn + G+++ e l  +   +   ++ + G       +er++gf  ++++  g+ + +e++ ++++++e + qale l+++++   +++aa+
    EHT98570.1 161 VPKVFADNVQGGRIATENLIAAGHRH---IAFVGGPDELMSVRERYQGFCTAMTQ-AGLHVPPEWVmYGEYQREFGEQALERLFSRDErPTAVFAAS 253
                   ***********************966...88778888888888******999888.79**9998888989***************88448******* PP

                   CCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHT CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallk 255
                   d  ++g l+ l+a gl+   ++  ++ ++++ +   +  i+ t+ q+++elg++av +++++l+
    EHT98570.1 254 DYLVLGLLDGLRARGLTAPEALSLVGFDDATYADFTQPRIS-TIRQPARELGRTAVHIMLRILN 316
                   ****************7776777777778888888888888.******************9986 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.9e-15   3.9e-12       2      46 .]      12      56 ..      11      56 .. 0.96
   2 ?    3.4   0.0     0.032        64      18      39 ..     313     334 ..     313     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.9e-15
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                + DVA lAG SkaTVSr++n++    +et +r+eaa+++l+Y+ n
  EHT98570.1 12 LSDVAALAGLSKATVSRYMNQSIMLPQETIDRIEAAIRQLDYRGN 56
                78****************************************866 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.032
                 HHCTTSSSSTHHHHHHHHHHHH CS
        LacI  18 rvLnnkerVseetrerVeaame 39 
                 r+Ln++  V +etr  Ve +++
  EHT98570.1 313 RILNDDLAVPAETRLPVEWVAR 334
                 89*************9998876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     2e-07   0.00041      13      48 ..      13      48 ..       7      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2e-07
                HHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHH CS
       HTH_3 13 eeLAeklGvsrstisriEnGernPsletlkklakaL 48
                 ++A+++G+s++t+sr++n   +  +et+ +++ a 
  EHT98570.1 13 SDVAALAGLSKATVSRYMNQSIMLPQETIDRIEAAI 48
                689*****************************9875 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05     0.028      18      50 ..      13      47 ..       7      60 .. 0.76
   2 ?    4.0   0.0     0.031        62      10      40 ..     265     294 ..     259     326 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrpspa..vleal 50
                 +vA+++g+s++t+sr+++  + +p++    +ea+
  EHT98570.1 13 SDVAALAGLSKATVSRYMNQSIMLPQETidRIEAA 47
                69********************8774433344444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.031
      HTH_31  10 ReraGLsqeevAerlgvsestlsrlEqGrrg 40 
                 R ++GL+  e+  ++g+  +t+ +  q r+ 
  EHT98570.1 265 R-ARGLTAPEALSLVGFDDATYADFTQPRIS 294
                 4.89************777777776665553 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.2e-06     0.018      21      40 ..      12      31 ..       6      32 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.2e-06
                HHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 21 lselArrtglpkStvhRlLq 40
                ls++A+ +gl+k+tv+R+++
  EHT98570.1 12 LSDVAALAGLSKATVSRYMN 31
                99***************986 PP

>> PsiB  Plasmid SOS inhibition protein (PsiB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016      0.32      13      54 ..     194     232 ..     191     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
        PsiB  13 eelEdyrerGeefRreLshavlraLevpesWrvnaEyrsEfG 54 
                 +el  +rer + f   +++a    L+vp +W + +Ey+ EfG
  EHT98570.1 194 DELMSVRERYQGFCTAMTQA---GLHVPPEWVMYGEYQREFG 232
                 56666666666666666654...699***************9 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00015      0.31       6      46 ..       5      44 ..       3      48 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      HTH_26  6 madrgitkseLargtgisaatlsrlvkgkpervsldtLdki 46
                m ++++  s++a  +g+s+at+sr+ ++ +  +  +t+d+i
  EHT98570.1  5 MSKKRVLLSDVAALAGLSKATVSRYMNQSI-MLPQETIDRI 44
                778888899******************976.6666777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2620.35
//
Query:       EHT98571.1  [L=316]
Description: putative binding periplasmic protein of ABC transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-53  181.7  22.4    2.2e-53  181.5  22.4    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    8.8e-17   61.4   4.4    1.2e-16   61.0   4.4    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.4e-12   47.0   0.3    2.3e-10   41.0   0.0    2.1  2  Peripla_BP_3  Periplasmic binding protein-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5  22.4   3.7e-57   2.2e-53       9     257 ..      42     290 ..      34     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 3.7e-57
                   STC.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-H CS
  Peripla_BP_4   9 snp.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdn 104
                   + + ff+++++g++eaak+ g++ ++ ++a+ +   Q+++ie+ i++gv+gi+v+++d++++ pa+k+a+aa+IpV+a+d+   p+g+++a vg dn
    EHT98571.1  42 Q-AlFFNQMNQGAQEAAKASGKNLVI-FNANDNPVSQNDAIENYIQQGVKGIMVDAIDVNGIMPAIKEAAAAKIPVIAIDAV-LPAGPQAAQVGVDN 135
                   4.44******************9998.6999999************************************************.************** PP

                   HHHHHHHHHHHHHHCTTH....EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHC CS
  Peripla_BP_4 105 eaaGelqaeylaeklggk...kgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaeg 197
                    + G+++++y ++++ ++   k+ + i+ G+++++ +++r +gf++++k  pgi++ ++v+g ++ +++a +a+e+l+t np l +i+a++  + +g
    EHT98571.1 136 LEGGKIIGKYFVDYVAKNmggKARLGIV-GALNSAVQNQRQKGFEETIKSNPGITVADVVDG-QNVQDTAMTAAENLITGNPdLTAIYATGEPALLG 230
                   ********88888888888766888877.****************************97777.****************9955************** PP

                   HHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 198 alealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   a++a+e++g++++++v+g+D+t++a+  i+ G ++a   qdp+++g+ av++++a+ +Gk
    EHT98571.1 231 AIAAVENQGRQKDIKVFGWDLTSKAISGIDGGYVTAVLQQDPKKMGEEAVKALNAITAGK 290
                   ********************************************************9998 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   4.4     2e-20   1.2e-16       7     274 ..      36     301 ..      30     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2e-20
                   EES-T.TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-T.....TT CS
  Peripla_BP_1   7 vlpql.dePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts..fdditakaesgipvialedaidap.....dg 94 
                   +++ + ++ ff ++++g+++aak+ g ++++ +a++++  +  ai+   ++g++g+ +   d +  +++i++ a++ ipvia++ +  a      +g
    EHT98571.1  36 LVQINqQALFFNQMNQGAQEAAKASGKNLVIFNANDNPVSQnDAIENYIQQGVKGIMVDAIDVNgiMPAIKEAAAAKIPVIAIDAVLPAGpqaaqVG 132
                   4544426679****************************9988*****************99988789******************965546665556 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHTG.EEEEEE-TTSHHHHHHHHHHHHHHHT.T-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSH CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrpi.allegpesaltakervqGflaalaea.GlevkdvhvalgsndiedaaealnelleshPeidaivaind 189
                   v+  +   + +g+    +  +++ ++   + + g  ++  +++r +Gf+++++   G  +   +v  g n +  a  a+++l+  +P++ ai+a  +
    EHT98571.1 133 VD-NLEGGKIIGKYFVDYVAKNMGGK-ArLGIVGALNSAVQNQRQKGFEETIKSNpG--ITVADVVDGQNVQDTAMTAAENLITGNPDLTAIYATGE 225
                   66.33445555555555566666666.246777888899999999*******98725..5999********************************** PP

                   HHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEEEETT CS
  Peripla_BP_1 190 eaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvllipvk 274
                    a lGa+ a++ +Gr+k   ++     +v + d  +ka  +i  + + av q   + +G +a + +   i++++++++ +l+p+ 
    EHT98571.1 226 PALLGAIAAVENQGRQK---DI-----KVFGWDLTSKAISGIDGGYVTAVLQQDPKKMGEEAVKALNA-ITAGKTVSKTILVPAT 301
                   **************866...45.....55666655555544444555667788888888888877765.8888888888888865 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.1    0.0083        49      20      80 ..      40      93 ..      24     131 .. 0.71
   2 !   41.0   0.0   3.9e-14   2.3e-10      11     164 ..     159     306 ..     154     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0083
                  TSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEEE CS
  Peripla_BP_3 20 drgasasderergfrqaleelglplnetvvaaddpaaaaaaraal..llqalklaalPtAvia 80
                   ++a + +++ +g+++a+++ g +l ++ +++++ + ++a+++ +      +      +++++
    EHT98571.1 40 NQQALFFNQMNQGAQEAAKASGKNLVIFNANDNPVSQNDAIENYIqqG---V------KGIMV 93
                  55566788999*******************999999999988866220...2......34443 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 3.9e-14
                   EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC.-S..EEEEESSCCHHHHHHHHHCCTT--TTTT CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalllqalklaa.lP..tAviaasDelAlgvlqalreaglrvPed 103
                   r++++g   + ++  +++r++gf++++ +  g++++++v  ++ +++a  a+++l +      + +P  tA++a+ + + lg+++a++ +g +  +d
    EHT98571.1 159 RLGIVG---ALNSAVQNQRQKGFEETIkSNPGITVADVVDGQNVQDTAMTAAENL-I------TgNPdlTAIYATGEPALLGAIAAVENQGRQ--KD 243
                   556666...444667889*********9999***999999999888777777766.2......2345338***********************..** PP

                   EEEEBSS--SCC..CSSSS--E.EEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--G CS
  Peripla_BP_3 104 lsvigfddsela..alssPplT.tvrqpleelGraaaellldllegekappeqvllppelveRe 164
                   ++v+g d ++ a  ++    +T +  q+++++G++a+++l +     k++ +++l+p ++v+ +
    EHT98571.1 244 IKVFGWDLTSKAisGIDGGYVTaVLQQDPKKMGEEAVKALNAIT-AGKTVSKTILVPATVVTKA 306
                   *******54444434444444626799*************9987.88999*****999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2554.94
//
Query:       EHT98572.1  [L=293]
Description: ribokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-35  122.5   3.5    4.5e-34  118.1   3.5    2.0  1  PfkB      pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.031   13.7   0.2      0.075   12.5   0.1    1.6  1  PhoH      PhoH-like protein


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   3.5     5e-38   4.5e-34      19     301 ..      19     276 ..       3     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 5e-38
                 SSH.TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHH CS
        PfkB  19 ekl.egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedgertivfnrgaaadlt 116
                 + + +g +v++ + ++  GG+gaN+A +l+r+g++++++ a G D  G  ++++l  e v     + ++ +   + li++++dg++ i++   aa++l+
  EHT98572.1  19 DIPaKGASVHGYHRSQDIGGKGANQAIVLSRCGIETVLLAATGHDSKGNWIRQQLINEPVTLLPAQPVA-ALSDTSLILNSADGDNAIITSTAAAEALD 116
                 44444556699999**********************************************997777444.59999999999999*************** PP

                 HHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHH CS
        PfkB 117 keeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeElealtgekledieealaalhkl 215
                  + l ++++    +dll+  g    +++    ++l+++ak+ g     + +p++  +   ++++++++d++ +n++E+++l+  +              
  EHT98572.1 117 IATLSHHLAGARPGDLLVQQG----NFSPGKTHALFSLAKSLG--LITVFNPSP--VHAGFRACWPQVDIAVVNQHEAQQLAPGA-------------- 193
                 *********************....888899999*********..899999999..79*********************888777.............. PP

                 HHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHH.HHHTTHHHHH.HHHHHHHHHHHHHTSSSSSTCSCC CS
        PfkB 216 kakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggfla.allegkslee.alrfanavAalvvqkkgaiaslpt 301
                     +kt+vvt+G+ Ga++ ++++  ++pa +   +vDttGAGD+f + +la all+g ++ + al  a+++Aal+v+++g++ + pt
  EHT98572.1 194 ----VKTLVVTHGSAGAWLIQGEQRTFCPA-QVAHAVDTTGAGDTFLAVMLAsALLRGGEIDKlALTHASKAAALTVSRHGTRQAFPT 276
                 ....689***********************.99****************87526777777765489****************998887 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   8.4e-06     0.075      20      58 ..     220     258 ..     212     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.4e-06
                 SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S CS
        PhoH  20 divfaiGpaGtGKtylavalavealkkkkvkriiltrpa 58 
                 ++  a+  +G+G t+lav+la ++l+ ++++++ lt ++
  EHT98572.1 220 QVAHAVDTTGAGDTFLAVMLASALLRGGEIDKLALTHAS 258
                 56778889*************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2384.43
//
Query:       EHT98573.1  [L=281]
Description: hypothetical protein CKS_4960 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-70  235.1   0.1    9.6e-70  234.9   0.1    1.0  1  BtpA       BtpA family
    0.00097   18.1   0.0     0.0015   17.4   0.0    1.4  1  Trp_syntA  Tryptophan synthase alpha chain
  ------ inclusion threshold ------
      0.027   14.4   1.6       0.19   11.7   0.1    2.8  2  RHH_1      Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> BtpA  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.1   1.6e-73   9.6e-70       2     253 ..      19     275 ..      18     276 .. 0.96

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 1.6e-73
        BtpA   2 ekpvigvvHLkpLPgsaeyka.nleevidkAvkeakaleegGvDavilenygdaPflke..vdpetvaamtvivkevksdvsiplGvnvLrndavaala 97 
                  k+vigv+H  p Pgs++y + +++++i++A+++a+ +  gGv ++i+en+gd Pf k   ++pet a m+vi ++v++  ++plG+nvL n a+ a+a
  EHT98573.1  19 SKAVIGVIHCDPFPGSPKYRGkSVSAIIERALRDAENYILGGVHGLIVENHGDIPFSKPedIGPETPAFMAVITEKVRERFGVPLGINVLANAALPAFA 117
                 79*****************9889*********************************9865699************************************ PP

        BtpA  98 iAkavgakFiRvnvltgvalsdeGilegkaaellrykkllesr.vkiladvavkhavp..lverdlesavkdtvergladavilsGkatGgevdleelk 193
                  A a+ga+FiRvn+ +++++++eG +eg aa+ lry+ +l ++ ++++ad +vkh  +  +++r++++  +d      adavi +G++tG ++ l+e+ 
  EHT98573.1 118 TALAGGADFIRVNQWANAYIANEGFIEGAAAKALRYRSQLRAEhIRVFADSHVKHGSHaiVADRSIQELTRDV-DFFEADAVIATGQRTGDSATLDEID 215
                 ****************************************9888***********988435689999999997.8899********************* PP

        BtpA 194 laketvkvkvlvgsGvseenlekllsiadGvivgtsikkdGkianaiDkervrkivelae 253
                  ++ +  ++ lvgsGv+  n+ ++l  ++Gviv++ +k dG+ +n +D++rv++++  a+
  EHT98573.1 216 EIRAATALPLLVGSGVTPANVCQILGRTQGVIVASALKVDGVWWNDVDRDRVKQFMAVAQ 275
                 ********************************************************8875 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-07    0.0015     176     232 ..     201     256 ..     180     281 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-07
                 SSTTSSB-TTHHHHHHHHHHCTSS-EEEESSS-SHHHHHHHHTT-SEEEE-HHH.HHH CS
   Trp_syntA 176 TgaenavaaevdelverlkkltavPvavGFGistkeqvkqvakvadGvivGSal.vkk 232
                 Tg+++  +a++de + +++++ta+P++vG G+ t+++v q+   ++Gviv Sal v+ 
  EHT98573.1 201 TGQRTGDSATLDE-IDEIRAATALPLLVGSGV-TPANVCQILGRTQGVIVASALkVDG 256
                 8888888888876.89***************9.6889999999*********984554 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.1e-05      0.19      21      36 ..      38      53 ..      36      56 .. 0.90
   2 ?    0.6   0.2       0.1   6.2e+02       7      21 ..     207     221 ..     207     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
                HTSSHHHHHHHHHHHH CS
       RHH_1 21 rgrSrSelIReAlrey 36
                rg+S+S++I++Alr++
  EHT98573.1 38 RGKSVSAIIERALRDA 53
                79************86 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
                 EHHHHHHHHHHHHHH CS
       RHH_1   7 deellerLdelarrr 21 
                 d+ +l+++de+++++
  EHT98573.1 207 DSATLDEIDEIRAAT 221
                 678999****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2280.74
//
Query:       EHT98574.1  [L=429]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.6e-103  345.0   0.3   9.8e-103  344.8   0.3    1.0  1  DUF445    Protein of unknown function (DUF445)
  ------ inclusion threshold ------
       0.02   14.3   0.1      0.028   13.8   0.1    1.2  1  DUF1616   Protein of unknown function (DUF1616)
       0.17   11.8   0.3        1.3    9.0   0.0    2.2  2  DUF3206   Protein of unknown function (DUF3206)
       0.31   11.6   2.1         32    5.1   0.0    3.5  2  YtxH      YtxH-like protein


Domain annotation for each model (and alignments):
>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8   0.3  2.2e-106  9.8e-103       1     366 [.      44     417 ..      44     418 .. 0.99

  Alignments for each domain:
  == domain 1  score: 344.8 bits;  conditional E-value: 2.2e-106
      DUF445   1 aeaAliGaladwfAikaLFRhPlglpiP...fttglIPknkeriakklgnfVeehLLtkeslakkLkeaevasklaewlknptnkeslaaiveellkei 96 
                 aeaA++GaladwfA++aLFR+   +p+P    +t++IP+nk+ri+++lg+fV+e++L+++sl + +++++++ +la wl++p n++++ +++ +++++ 
  EHT98574.1  44 AEAAMVGALADWFAVVALFRR---VPVPfiaRHTAIIPRNKDRIGENLGRFVQEKFLDTDSLLNLIRRHDPSHMLATWLSAPGNADRVGRHLLQVMRGF 139
                 69******************9...99996677******************************************************************* PP

      DUF445  97 ledlddesikellkknlkkkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklv........lesivsmf 187
                 l+ +dd +i+++++++++k +++v+++++ + +le l++++rh++lld+ +d++ +ll+++ ++e i++ + +++++e++  +         e+ ++ +
  EHT98574.1 140 LDLTDDARIQHFMRRAVHKAIDKVDLSQTGALMLESLTKNNRHQELLDAAVDQLLRLLDKPSTREFIANQLVRWLKREHPIKAkmlptewlGEHSAELV 238
                 ******************************************************************************9988899************** PP

      DUF445 188 lreltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdlneeesllrerisklleklgekla 286
                 +++++s+l++v  d+ h+lr  ++++v +li++l+ndpe+a+++e +k  + +d++ ++y  +lw +l+d+l++dln+e s ++ ++ ++  +lge+la
  EHT98574.1 239 ANAVDSLLDDVALDQGHELRLGFNRAVDRLIEKLKNDPEMAERAEVIKGWLKDDPTLNRYIGELWGDLRDWLKADLNSEASKVQDKVRQAALWLGETLA 337
                 ******************************************************************************77******************* PP

      DUF445 287 edpklreklnkflenaaakvlekyrldiskiveetvnafdaeeleelIelivgkeLqaIrinGtlvGgliGlllylvsll 366
                  d+ lr+++n++le+aa++v++++++ +++++++tv+++da+e++++Iel++gk+Lq+IrinGtlvGg iGl+lyl+s++
  EHT98574.1 338 ADEGLRSSMNQHLEDAARSVAPEFAAFLTRHISDTVKSWDAREMSQQIELNIGKDLQFIRINGTLVGGTIGLVLYLLSQI 417
                 ******************************************************************************97 PP

>> DUF1616  Protein of unknown function (DUF1616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   6.2e-06     0.028      47     114 ..       4      73 ..       2     104 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.2e-06
     DUF1616  47 krdidgieRlaLSfglSiaivpliglvl..nvtpwgirlepilvslslftlllalvAivrRsrlpeeerf 114
                 +r++++++RlaLS+ l  ai+ +++l+l  n+   gi++   ++++ ++   +a+vA++rR  +p   r+
  EHT98574.1   4 QRELKRTKRLALSLLLLAAITFVVTLFLppNFYVSGIKAIAEAAMVGALADWFAVVALFRRVPVPFIARH 73 
                 789**********************9997789999**************************999866665 PP

>> DUF3206  Protein of unknown function (DUF3206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.18   8.3e+02      63     103 ..     171     209 ..     161     218 .. 0.74
   2 ?    9.0   0.0   0.00029       1.3      50      96 ..     227     274 ..     217     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.18
                 HHHHHHTT-TT-SSHHHHHHHHHHHHHHHHHHHTT---HHH CS
     DUF3206  63 lvvqslledenyddveelkdelarllrlydalakdeltene 103
                 l+++sl +++   + e l   +++llrl d+ + +e+  n+
  EHT98574.1 171 LMLESLTKNN--RHQELLDAAVDQLLRLLDKPSTREFIANQ 209
                 5556665444..34456777899999999999999999887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00029
                 TTHHHHHHHHHHHHHHHHHTT-TT-SSHHHHHHHHHHHH.HHHHHHHT CS
     DUF3206  50 pdwleeavaglqslvvqslledenyddveelkdelarll.rlydalak 96 
                  +wl e  a l +  v+sll+d   d+  el+  ++r + rl ++l++
  EHT98574.1 227 TEWLGEHSAELVANAVDSLLDDVALDQGHELRLGFNRAVdRLIEKLKN 274
                 48*********************************9987356666655 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0072        32      22      65 ..     253     327 ..     249     385 .. 0.80
   2 ?    3.9   0.5     0.018        80       3      17 ..     400     414 ..     398     416 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0072
        YtxH  22 sGketRkdlkekaddlkekakelleeakeka................................kekaedlkekvke 65 
                  G+e+R   ++++d l ek+k+   e++e+a                                +++a+++++kv++
  EHT98574.1 253 QGHELRLGFNRAVDRLIEKLKND-PEMAERAevikgwlkddptlnryigelwgdlrdwlkadlNSEASKVQDKVRQ 327
                 68888888888888888888655.5666777777788888888888888888777777777776677777777665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.018
        YtxH   3 glliGaavGaaaglL 17 
                 g l+G+ +G ++ lL
  EHT98574.1 400 GTLVGGTIGLVLYLL 414
                 89***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3365.99
//
Query:       EHT98575.1  [L=164]
Description: hypothetical protein CKS_4962 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1343.28
//
Query:       EHT98576.1  [L=321]
Description: hypothetical protein CKS_4963 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-149  498.7   0.0   1.9e-149  498.5   0.0    1.0  1  DUF853    Bacterial protein of unknown function (DUF853)
    0.00077   19.1   0.0     0.0011   18.6   0.0    1.2  1  Zot       Zonular occludens toxin (Zot)
  ------ inclusion threshold ------
      0.071   12.0   0.0      0.092   11.7   0.0    1.1  1  AAA_10    AAA-like domain
      0.074   13.0   0.0       0.17   11.9   0.0    1.6  1  TraG-D_C  TraM recognition site of TraD and TraG


Domain annotation for each model (and alignments):
>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.5   0.0  4.2e-153  1.9e-149     178     504 .]       1     321 []       1     321 [] 0.97

  Alignments for each domain:
  == domain 1  score: 498.5 bits;  conditional E-value: 4.2e-153
      DUF853 178 vgaiqreLltLeqqGaekffGePaLdledllrtdadGrGvislLaadkllqsPklyatfLlWllseLfeeLPevGdldkPklvfffdeahLLfndapka 276
                 +gaiqr+Ll+Le+qGae+ffGeP+L+++d++r+d dG+G+i++L+a+kl+q+Pklyat+LlW+lseL+e LPe+GdldkPklvfffdeahLLfndap +
  EHT98576.1   1 MGAIQRALLALEEQGAEHFFGEPMLEISDWMRVDGDGKGIINILSAEKLYQMPKLYATSLLWMLSELYEYLPEAGDLDKPKLVFFFDEAHLLFNDAPPV 99 
                 59************************************************************************************************* PP

      DUF853 277 llekveqvvrLirskGvGvyfvtqnPldlPdtvLaqLGnrvqhalraftpkdqkavkaaadtfranpefdveeaiteLgvGealvsvLdekGaPsiver 375
                 llek+eqv+rLirskGvG++fvtqnP+d+PdtvL+qLGnrvqhalraftp+dqkavk+aa+t+ranp+f + eai++Lg+Geal+s+Ld+kG+Ps+ver
  EHT98576.1 100 LLEKIEQVIRLIRSKGVGIWFVTQNPADIPDTVLGQLGNRVQHALRAFTPRDQKAVKTAAETLRANPAFTTVEAIQALGTGEALISFLDAKGSPSVVER 198
                 *************************************************************************************************** PP

      DUF853 376 alvvpPasrlgplseeeraalvqespvagkydeeidresayevLakkvaeaaeaaeqaaaeeeke.eesgllgalkdtalgaaakkaeergskketvve 473
                 a+v++P sr+gp+  +er+ ++++sp+ gkyd+eidresaye L++ v++a+e+a++ +a+ ++   ++g+lg+lkd  +g    ++ +rg k++ vv+
  EHT98576.1 199 AMVIAPGSRMGPVNTDERNGMINHSPLSGKYDTEIDRESAYERLQQGVQAASEKANAPEAKGNTVaVDDGILGGLKDILFG----STGPRGGKRDGVVQ 293
                 ***************************************************9999998877665338999***********....679*********** PP

      DUF853 474 alaksvvrsvasqvgrelvrgllGsl.ggkkr 504
                 ++aks+ r    q++++++rg+lGsl gg++r
  EHT98576.1 294 TMAKSAGR----QITNQIIRGVLGSLfGGRRR 321
                 *9999988....88999*********999987 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.6e-07    0.0011      83     150 ..      83     147 ..      44     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.6e-07
         Zot  83 llviDEcqeifpvrakegrkdpevinaftehRhlgwDivlltqdiskihkevralaekavklkrkaai 150
                 + ++DE++ +f+   +     +++++     R  g  i ++tq+++ i++ v +  +  v++  +a  
  EHT98576.1  83 VFFFDEAHLLFNDAPPV--LLEKIEQVIRLIRSKGVGIWFVTQNPADIPDTVLGQLGNRVQHALRA-F 147
                 5689********99986..457777999*****************************999998774.3 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     2e-05     0.092     216     320 ..      54     166 ..      45     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
      AAA_10 216 kllsvavlfviaafarefass.dk.kefkvvifDEawiftssaeGkkl..lkelvRiGRsynaavylvtqsadDvlkee...lknniglkl.aFretdk 306
                 kl + ++l +++ + + +  + d  k   v +fDEa  + + a    l  +++++R  Rs    + +vtq++ D+ +     l+n + ++l aF + d+
  EHT98576.1  54 KLYATSLLWMLSELYEYLPEAgDLdKPKLVFFFDEAHLLFNDAPPVLLekIEQVIRLIRSKGVGIWFVTQNPADIPDTVlgqLGNRVQHALrAFTPRDQ 152
                 556666666666666666433333033457899***998887776655225799*********************887645578889888878999999 PP

      AAA_10 307 eeikkvLeflgldv 320
                 ++ k   e l ++ 
  EHT98576.1 153 KAVKTAAETLRANP 166
                 88888777776665 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.8e-05      0.17      14      42 ..     100     128 ..      81     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
    TraG-D_C  14 kipdleellstgrsrgislvlilQsiaql 42 
                  ++++e+++  +rs+g+ +++++Q+ a++
  EHT98576.1 100 LLEKIEQVIRLIRSKGVGIWFVTQNPADI 128
                 4689*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2465.02
//
Query:       EHT98577.1  [L=159]
Description: hypothetical protein CKS_4964 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-76  258.1   0.6    1.5e-76  258.0   0.6    1.0  1  DUF853         Bacterial protein of unknown function (DUF853)
    2.4e-07   31.1   0.0    2.8e-07   30.9   0.0    1.1  1  DUF87          Helicase HerA, central domain
    3.3e-05   23.0   0.1    4.6e-05   22.5   0.1    1.2  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
    9.6e-05   22.2   0.1    0.00013   21.7   0.1    1.2  1  AAA_30         AAA domain
    0.00014   21.3   0.1    0.00023   20.6   0.1    1.4  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
    0.00022   21.5   0.4    0.00029   21.1   0.3    1.5  1  AAA_22         AAA domain
    0.00042   20.7   0.0    0.00044   20.6   0.0    1.2  1  AAA_19         AAA domain
     0.0011   19.1   0.0     0.0015   18.6   0.0    1.2  1  ResIII         Type III restriction enzyme, res subunit
     0.0023   18.2   0.1      0.003   17.8   0.1    1.2  1  AAA_28         AAA domain
     0.0024   17.5   0.0     0.0026   17.4   0.0    1.1  1  AAA_25         AAA domain
     0.0031   17.1   0.0     0.0045   16.5   0.0    1.2  1  AAA_7          P-loop containing dynein motor region
     0.0044   16.1   0.0     0.0072   15.4   0.0    1.3  1  T2SSE          Type II/IV secretion system protein
     0.0047   17.3   0.0     0.0071   16.8   0.0    1.3  1  AAA            ATPase family associated with various cellular
     0.0048   16.9   0.1     0.0075   16.3   0.1    1.3  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0055   17.1   0.1     0.0063   16.9   0.1    1.3  1  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.2   0.5      0.022   14.4   0.5    1.4  1  SRP54          SRP54-type protein, GTPase domain
      0.042   12.8   0.1      0.056   12.4   0.1    1.1  1  AAA_6          Hydrolytic ATP binding site of dynein motor re
      0.053   14.1   0.0      0.076   13.6   0.0    1.4  1  AAA_18         AAA domain
      0.055   12.4   0.0      0.068   12.1   0.0    1.1  1  AAA_10         AAA-like domain
      0.055   13.4   0.2      0.083   12.8   0.2    1.2  1  NTPase_1       NTPase
      0.058   12.6   0.1      0.072   12.3   0.1    1.1  1  DUF2075        Uncharacterized conserved protein (DUF2075)
       0.12   12.3   0.9        0.3   11.0   0.1    1.9  2  NACHT          NACHT domain
       0.17   11.3   0.1       0.22   10.9   0.1    1.2  1  IPT            Isopentenyl transferase


Domain annotation for each model (and alignments):
>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.0   0.6     2e-79   1.5e-76       3     157 ..       5     159 .]       3     159 .] 0.98

  Alignments for each domain:
  == domain 1  score: 258.0 bits;  conditional E-value: 2e-79
      DUF853   3 lliakeaeqelalalklanrhGliaGatGtGktvtLqvlaeslseaGvpvfladvkGdLsgiakaGevkdklaarleeiglddyqlkalPvtlwdvfge 101
                 llia++++ +l+l +++anrhGli+GatGtGktvtLq+laes+s++Gvpvf+advkGdL+g+a aG+ ++kl+arl++ig+ d+q++ +Pv+lwd+f+e
  EHT98577.1   5 LLIAQTPDVQLHLLPQMANRHGLITGATGTGKTVTLQKLAESFSSIGVPVFMADVKGDLTGVAMAGQSSEKLQARLASIGVADWQPQRNPVVLWDIFAE 103
                 578899999****************************************************************************************** PP

      DUF853 102 kGhpvratiselGPllLarllelndvqegvLnivfriadeeGllLldlkdLrallk 157
                 kGhpvrat+s+lGPl+Larll+ln+vq+gvL+i+friad++GllLld+kdLra+++
  EHT98577.1 104 KGHPVRATVSDLGPLMLARLLNLNEVQSGVLQIIFRIADDQGLLLLDFKDLRAMTQ 159
                 *****************************************************975 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.6e-10   2.8e-07      13     128 ..      12     141 ..       5     154 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.6e-10
       DUF87  13 pvyldl.nklvtrHlAilgsTGsGKSntvavLleellekkgatililDpHGEYgkal..........ekllsekvkvitpspsa............... 85 
                 +v l+l  ++ +rH +i g TG+GK+ t   L e+   + g+++ + D+ G+               ++l s  v        +               
  EHT98577.1  12 DVQLHLlPQMANRHGLITGATGTGKTVTLQKLAESFS-SIGVPVFMADVKGDLTGVAmagqsseklqARLASIGVA-------Dwqpqrnpvvlwdifa 102
                 4677776899***************************.**************999997775543333222222222.......1445566688888888 PP

       DUF87  86 .kdkelkinpwsldpeelldlleeddkpaaavqrsvleealdqa 128
                  k ++++  +++l p  l++ll       ++vq  vl+ +++ a
  EHT98577.1 103 eKGHPVRATVSDLGPLMLARLLNL-----NEVQSGVLQIIFRIA 141
                 899999999999999999999998.....777888877777655 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   5.9e-08   4.6e-05      12      56 ..      20      64 ..      13      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.9e-08
  TrwB_AAD_bind 12 eretqhilivGttGsGKtqalekllrairargdraivlDltGafv 56
                   +  ++h li+G+tG+GKt++l+kl ++  + g  +  +D +G+++
     EHT98577.1 20 QMANRHGLITGATGTGKTVTLQKLAESFSSIGVPVFMADVKGDLT 64
                   66789*************************************987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.7e-07   0.00013      14      66 ..      22      80 ..      11     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.7e-07
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaag.........grviglAptgkaAkvLaeel 66
                ++   r  ++tG+ GtGKt +l++l+e + + g         g++ g+A  g+ +++L++ l
  EHT98577.1 22 AN---RHGLITGATGTGKTVTLQKLAESFSSIGvpvfmadvkGDLTGVAMAGQSSEKLQARL 80
                43...3469************************99999999999999999999999998654 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     3e-07   0.00023      35      60 ..      18      44 ..       7      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3e-07
                  GGGS-..SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 35 lkkma.shllvaGatgsGKStalntLi 60
                  l++ma  h+l+ Gatg+GK+++l+ L 
    EHT98577.1 18 LPQMAnRHGLITGATGTGKTVTLQKLA 44
                  5567778*****************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   3.7e-07   0.00029       5      30 ..      23      48 ..      20     125 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.7e-07
      AAA_22  5 agilvvtGesGtGKTtllrrlleqld 30
                 +++++tG +GtGKT++l++l+e++ 
  EHT98577.1 23 NRHGLITGATGTGKTVTLQKLAESFS 48
                5799******************9984 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.6e-07   0.00044       8      68 ..      21      86 ..      14     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.6e-07
      AAA_19  8 lkekvllvtaGpGtGKTrvlkhivallvelggvkp......eeillvaftgrAakelrerlaalgae 68
                +++++ l+t+  GtGKT +l++  + + ++g v++       +++ va++g++ ++l+ rla++g++
  EHT98577.1 21 MANRHGLITGATGTGKTVTLQKLAESFSSIG-VPVfmadvkGDLTGVAMAGQSSEKLQARLASIGVA 86
                678899**********************999.666788887889999999*****999999888776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-06    0.0015      24      49 ..      23      48 ..       9      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-06
                TSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII 24 dkrglikmaTGtGKTlvaaklierll 49
                +++gli  aTGtGKT+++ kl+e+++
  EHT98577.1 23 NRHGLITGATGTGKTVTLQKLAESFS 48
                789*****************999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   3.9e-06     0.003       4      33 ..      28      62 ..      26      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.9e-06
      AAA_28  4 itGgestGKTtlleaLaar....gypvv.pEaare 33
                itG+ +tGKT +l++La+     g+pv+ +++  +
  EHT98577.1 28 ITGATGTGKTVTLQKLAESfssiGVPVFmADVKGD 62
                9****************887788999886766555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.3e-06    0.0026      24     109 ..      16      99 ..       4     150 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.3e-06
      AAA_25  24 wlvkgllpagelallaGapgtGKttlaldlalava.tGkpwlg.pvapeqgkVlyvsaEdsedelrrRlravg.ealrddarllvldla 109
                 +l++ +  a+  +l++Ga+gtGKt+ +  la + +  G p++  + +    + +  ++  se  l+ Rl+ +g ++++ ++r +v+ ++
  EHT98577.1  16 HLLPQM--ANRHGLITGATGTGKTVTLQKLAESFSsIGVPVFMaD-VKGDLTGVAMAGQSSE-KLQARLASIGvADWQ-PQRNPVVLWD 99 
                 555566..5677899********************99****9954.4566666666666666.9*******9966664.4444444332 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.7e-06    0.0045      32      58 ..      22      48 ..      12      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.7e-06
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkld 58
                ++++ l++G tGtGKtv++++l ++++
  EHT98577.1 22 ANRHGLITGATGTGKTVTLQKLAESFS 48
                57899****************998876 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.2e-06    0.0072     124     153 ..      20      47 ..       6      58 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.2e-06
       T2SSE 124 kavrerglilvsGgTgsGKttllyallkei 153
                 +   ++   l++G+Tg+GKt++l  l + +
  EHT98577.1  20 QM--ANRHGLITGATGTGKTVTLQKLAESF 47 
                 44..3344489************9877665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.1e-06    0.0071       2      57 ..      27      87 ..      26     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.1e-06
                EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTS CS
         AAA  2 llyGppGtGKTllakavakel...gvefleisgsell..skyvgesekkirelfkeakeka 57
                l++G  GtGKT + + +a+++   gv+++  +++  l    + g+s++k+++ ++++    
  EHT98577.1 27 LITGATGTGKTVTLQKLAESFssiGVPVFMADVKGDLtgVAMAGQSSEKLQARLASIGVAD 87
                789*****************73336888777776554234599999999999998875544 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   9.6e-06    0.0075       5      40 ..      29      64 ..      27     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.6e-06
                ESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  5 stkGGvGKTtlaanLaralarrglrVllvDaDpqan 40
                 +  G+GKT+++ +La +++  g  V++ D+  + +
  EHT98577.1 29 TGATGTGKTVTLQKLAESFSSIGVPVFMADVKGDLT 64
                6789************************99866644 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   8.1e-06    0.0063      25      61 ..      24      62 ..      13     150 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.1e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekdg.gif.lrgkcd 61
                +  l++G+ G+GK+  +++l+++++  g  +f +  k d
  EHT98577.1 24 RHGLITGATGTGKTVTLQKLAESFSSIGvPVFmADVKGD 62
                5679******************99887744554444443 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.5   2.9e-05     0.022       5      34 ..      27      56 ..      23      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
                EEEESTTSSHHHHHHHHHHHHHHTTS-EEE CS
       SRP54  5 llvGlqGaGKTttlaKLaallkkegkkvll 34
                l+ G +G+GKT tl KLa+ +++ g  v +
  EHT98577.1 27 LITGATGTGKTVTLQKLAESFSSIGVPVFM 56
                799****************99987777666 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.2e-05     0.056      32      59 ..      23      50 ..      17      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.2e-05
       AAA_6 32 klggapaGpagtGKtEtvkdLakalakq 59
                +  g ++G +gtGKt t ++La++++  
  EHT98577.1 23 NRHGLITGATGTGKTVTLQKLAESFSSI 50
                67899*****************987654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.8e-05     0.076       2      27 ..      27      53 ..      27      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-05
      AAA_18  2 lltGtpGvGKttlakeLskrl.gfgvn 27
                l+tG+ G+GKt   + L+++   +gv 
  EHT98577.1 27 LITGATGTGKTVTLQKLAESFsSIGVP 53
                69*****************97333444 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.7e-05     0.068      18      60 ..      20      62 ..      17     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.7e-05
      AAA_10 18 ktnasasliiGdlGnGKSvlakllvlyisllggkaliiDpkke 60
                +  + + li+G +G GK v+ + l    s +g  +++ D k +
  EHT98577.1 20 QMANRHGLITGATGTGKTVTLQKLAESFSSIGVPVFMADVKGD 62
                5678999*******************9999***9999999987 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   0.00011     0.083       3      30 ..      27      54 ..      25      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                EEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkssgvkv 30
                +iTG  G+GKt  ++k++e  +s gv+v
  EHT98577.1 27 LITGATGTGKTVTLQKLAESFSSIGVPV 54
                79*******************9999987 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   9.3e-05     0.072       5      25 ..      27      47 ..      24      83 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.3e-05
     DUF2075  5 lVtGvaGtGKtvvllnllael 25
                l+tG++GtGKtv l +l+   
  EHT98577.1 27 LITGATGTGKTVTLQKLAESF 47
                79************9998876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00039       0.3       4      23 ..      27      46 ..      24      54 .. 0.88
   2 ?   -0.3   0.1       1.2   9.1e+02      52      88 ..     113     150 ..      76     155 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
                EEEC-TTTCHHHHHHHHHHH CS
       NACHT  4 ilqGeaGsGKTtLlqklala 23
                +++G+ G GKT+ lqkla+ 
  EHT98577.1 27 LITGATGTGKTVTLQKLAES 46
                799**************986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
                 .-HCHHHCCCCTS--SSS-CCHHHHCCSC.CCEEEEEE CS
       NACHT  52 rsladllfsqlpepaapvsevwavllelp.erlLlilD 88 
                   l  l+ + l+ +++ +s v +++ +++ ++ Ll+lD
  EHT98577.1 113 SDLGPLMLARLLNLNEVQSGVLQIIFRIAdDQGLLLLD 150
                 34555555666666666666888888876247788888 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00028      0.22       5      33 ..      27      58 ..      23      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
         IPT  5 lifGatttGKtaeaiklake...tgapvivlD 33
                li Gat+tGKt +  kla++    g+pv  +D
  EHT98577.1 27 LITGATGTGKTVTLQKLAESfssIGVPVFMAD 58
                89****************86222577887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1166.90
//
Query:       EHT98578.1  [L=522]
Description: extracellular solute-binding protein, family 5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-62  210.1   2.6    6.1e-62  209.8   2.6    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   2.6   3.4e-66   6.1e-62       2     375 ..      70     438 ..      69     440 .. 0.94

  Alignments for each domain:
  == domain 1  score: 209.8 bits;  conditional E-value: 3.4e-66
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC...TCTEEEEEEEETTEEEEEESSETT..TTTTHCHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee...dqdikkveavddytvrftlkkpna..lfltllaa 95 
                 + p  A + w+  +   ++ f L++ ++F+ G+pltA+Dvvfsf r+++ + a++   + +     + ++ +++++d++++++ +++    l+l+ll+a
  EHT98578.1  70 LSPLAALR-WQPGKTPNSLVFDLNPQARFASGNPLTAKDVVFSFTRAVKLNKAPSFILSEFGwtpENIDQQFTVINDHQLELRWPAQIGqdLALRLLTA 167
                 67888888.688889999*******************************9998877555544899**********************666689999999 PP

                 HHHHHGC.....CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHH CS
   SBP_bac_5  96 vpasiak.....kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieql 189
                 + +si+       +a+ +d  +++ +++  g+ +Y +k+f+p q +vle+np+  + +k++l+r+ +k ++d+ +r++  q+G++d + ++ p+++++l
  EHT98578.1 168 PVSSIVDsklaqSHAASNDYGNGWLKTHSAGSAAYAIKQFVPLQALVLEANPN--STQKAHLKRVLLKGVADPGTRRLLIQQGDVDAAYQLGPDQLASL 264
                 99999999***9888899999********************************..49*************9999999999******************* PP

                 HHHTTEEEEEEEEEEEEEEEEETTT...STGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-B CS
   SBP_bac_5 190 keakglkvlyespgggvtylafNtk...kppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGyk 285
                 k ++++ + + +p++ ++yl+fNtk   +p + ++++ qA    +D++++++++l+g++++++s+lp++++ga e+++    +yd+ekAk++L++ G+k
  EHT98578.1 265 KSDPNVHI-AAFPSSLIYYLGFNTKstqQPALGNPALWQAARWLVDYDSLANQLLKGQYRVHQSFLPQGFDGALETKPF---HYDVEKAKAILAKGGIK 359
                 ********.****************************************************************888777...89*************** PP

                 CSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCT CS
   SBP_bac_5 286 dgdggglrekklkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssga 375
                  g            + l + ++p+  +ia+++q++++k+ +++++++v   ++ ++++++++f  i++ wgady+dp++  ++f ++  +
  EHT98578.1 360 PGA----------HIALSVVNQPPYIDIAQALQSSFAKAEVNLDIQPVAE-SELWSKMRSRQFESIFTYWGADYIDPNTNASTFAYNVPN 438
                 **7..........7888888889999**********************77.78889****************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3705.75
//
Query:       EHT98579.1  [L=222]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-64  215.0  11.2    7.5e-64  214.9  11.2    1.0  1  MarC       MarC family integral membrane protein
  ------ inclusion threshold ------
       0.65    8.9   3.3       0.18   10.8   0.3    1.5  2  PalH       PalH/RIM21
       0.83    9.3   8.6      0.084   12.5   3.7    1.8  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9  11.2   1.2e-67   7.5e-64       2     202 ..       6     217 ..       5     218 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 1.2e-67
        MarC   2 kaiikafvsLlaiinplgnvpvflslleevskeerkrialkasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkakqkk.....e 95 
                 kai  ++v++l+++npl++v++fl+l+ e++ +er+r+al+asi++++i++v+ ++G+ +l++fgisi++l+iaGg+++++i+++ml++ ++      +
  EHT98579.1   6 KAIGLGLVVILPLANPLTTVALFLGLAGEMNFRERNRQALQASIYVFAIMMVAWYAGSAVLHTFGISIPGLRIAGGLIVAFIGFRMLFPAKPVghsveA 104
                 6788999**********************************************************************************9987778866 PP

        MarC  96 kkkkseeeeseekdeiavvPLAlPliaGPgaittvlvlaseass......ivekvavvlaillaalitllilllsslilrllgktginaleRlmGllLv 188
                 k+k++e e ++e  +ia+vPLA+P++aGPg+i++++++as+++s      +v  va+vl +l++ +i++++l++s +i+rl+gk gi+a++RlmG+lLv
  EHT98579.1 105 KHKHDELETAQEPVNIAFVPLAMPSTAGPGTIAMIISSASTVRSgvdfpaWVINVAPVLTFLVVSVILWISLRSSGAIMRLVGKGGIEAISRLMGFLLV 203
                 77777778888899*****************************99*****99*********************************************** PP

        MarC 189 alavqlivdGikei 202
                 +++vq+i++G+ e+
  EHT98579.1 204 CMGVQFIINGVLEV 217
                 **********9987 PP

>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   2.9e-05      0.18     198     234 ..      24      69 ..       3      73 .. 0.66
   2 ?   -2.3   0.2      0.29   1.7e+03     289     296 ..     166     173 ..     136     211 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
        PalH 198 alllf...sk......kfldalpalsylfelalvtlyaalviyYli 234
                 ++ lf   +       ++ +al+a +y+f +++v +ya + + +++
  EHT98579.1  24 TVALFlglAGemnfreRNRQALQASIYVFAIMMVAWYAGSAVLHTF 69 
                 3333344411334556999*******************99887765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.29
        PalH 289 llitvivW 296
                 l+++vi W
  EHT98579.1 166 LVVSVILW 173
                 22223333 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.7   1.4e-05     0.084     104     190 ..       8      92 ..       1      95 [. 0.75
   2 ?   -1.1   0.2      0.21   1.2e+03     180     192 ..     162     174 ..     116     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
   CPP1-like 104 lvlavltlvapaesvpalllalglgasiyflnrKekklgravlltlvgLvvGlllGsllasllqvd.valsglsseellvslvtlvll 190
                 ++l++++++  a+  ++++l lgl+  + f ++++++ ++a ++ ++ ++v++ +Gs++   +  + + l+  ++  l+v+++ + +l
  EHT98579.1   8 IGLGLVVILPLANPLTTVALFLGLAGEMNF-RERNRQALQASIYVFAIMMVAWYAGSAVLHTFGISiPGLR--IAGGLIVAFIGFRML 92 
                 56667777777777899*******999766.88999999*******************9998866533333..555556666666555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.21
   CPP1-like 180 llvslvtlvllwl 192
                 +l+ lv+ v+lw+
  EHT98579.1 162 VLTFLVVSVILWI 174
                 3444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1637.01
//
Query:       EHT98580.1  [L=211]
Description: hypothetical protein CKS_4967 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.026   15.0   0.5       0.14   12.7   0.2    2.0  2  TipAS        TipAS antibiotic-recognition domain
      0.052   13.6   0.1        0.1   12.7   0.1    1.5  1  Octopine_DH  NAD/NADP octopine/nopaline dehydrogenase, alpha-


Domain annotation for each model (and alignments):
>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12   1.1e+03      62      79 ..      37      51 ..      35      81 .. 0.73
   2 ?   12.7   0.2   1.5e-05      0.14       7      81 ..     115     194 ..     107     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
                XXXXXXXXXXXXXXXXXX CS
       TipAS 62 laeehralieefwgecsk 79
                ++ee+++++ee ++   +
  EHT98580.1 37 VIEEIYQWLEE-YD--PN 51
                58999999996.33..22 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.5e-05
                 HH--X.XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX CS
       TipAS   7 erygd.eaayqeseekiaklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwge....cskei 81 
                 ++y + + + ++++e +++l++ ++ e ++ +++l a+l + ++++k  +s++aq+l+    + i+e+  +    +++ei
  EHT98580.1 115 REYESrTPQTEALMEMFDELDALEMVEDNEDEDNLPADLLRSMKKHKISASDAAQRLIPDVNERIREHLMQypelMTPEI 194
                 567776779999*********************************************97766666655443333566665 PP

>> Octopine_DH  NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.1e-05       0.1      21     119 ..      16     114 ..      13     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
  Octopine_DH  21 aallnlsrieetegdfslyyegitpsvaevlealdeErlaiakalglevlplaer.lldaYgdeikdksslaevirtneaykgikaPmsldhRyltED 117
                  +a++n+s+ +  +++f+ y +g+ +++ + le+ d  r +i+   + +++ la++ + + Y+  + + ++l +++++++  +   +Pm l  Ry+ E+
   EHT98580.1  16 TACVNASEGSYVNKKFE-YDDGVIEEIYQWLEEYDPNRTHICLIENESAELLADElVDNGYHVHQVTIHQLLTWFAAEPPKSPDGTPMRLMLRYMAEE 112
                  67888888888889999.************************98866666666666999******************999988888***99******9 PP

  Octopine_DH 118 ip 119
                   p
   EHT98580.1 113 HP 114
                  77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      746  (0.0416086); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1432.23
//
Query:       EHT98581.1  [L=163]
Description: hypothetical protein CKS_4968 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-25   89.0   5.3    1.8e-25   89.0   5.3    2.2  2  DUF2501   Protein of unknown function (DUF2501)
  ------ inclusion threshold ------
        0.1   12.5   0.1       0.14   12.1   0.1    1.2  1  CDC37_M   Cdc37 Hsp90 binding domain
        5.3    7.1   5.7         12    6.0   5.7    1.5  1  TraW_N    Sex factor F TraW protein N terminal


Domain annotation for each model (and alignments):
>> DUF2501  Protein of unknown function (DUF2501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.6      0.19   1.2e+03       7      37 ..      18      48 ..      14      79 .. 0.64
   2 !   89.0   5.3   2.9e-29   1.8e-25       3      77 .]      85     161 ..      83     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
     DUF2501  7 assassvkdqLlgklglqtaeaekdsdYqqG 37
                + sa+s +dqL +     +++++   + q+G
  EHT98581.1 18 NASAASWQDQLSSAANQLSQQNNGAAGQQNG 48
                5567777777777666554444444444444 PP

  == domain 2  score: 89.0 bits;  conditional E-value: 2.9e-29
     DUF2501   3 nylsassassvkdqLlgklglq.taeaekdsdYqqGlqGlLktsngkqvnLsslgn..lkekvkkkvCdlVLkqaksl 77 
                 n+++ ++++svkdq+l+klgl+ ta++e+++dY+qG+ GlL+t+ng+q+nL+sl+n  + ek+k+k+Cd+VLkq+k++
  EHT98581.1  85 NVVK-NNVQSVKDQVLSKLGLNtTAAQEQKPDYTQGVAGLLNTGNGQQLNLQSLSNspMGEKLKTKACDVVLKQGKNF 161
                 5555.99***************88899999**********************************************96 PP

>> CDC37_M  Cdc37 Hsp90 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.3e-05      0.14      10      84 ..      28     104 ..      22     123 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
     CDC37_M  10 ykkseefllkhpeilseqqkdaLlmeafdaqlegkekka..kqvvhqslllqyireLaklnkeglknviklFfkki.k 84 
                 ++++++ l+++ +  + qq+ +L m+++++ l+ ++k +  + + + + ++qy+ e  ++ k++++ v +  ++k+  
  EHT98581.1  28 LSSAANQLSQQNNGAAGQQNGGLSMSSITSLLNSNDKAMsaNSMTNAAGVMQYCVEH-NVVKNNVQSVKDQVLSKLgL 104
                 566677778888888999***********999877766533889999********98.77777777777777777752 PP

>> TraW_N  Sex factor F TraW protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.7    0.0019        12       1      19 [.       6      23 ..       6      23 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0019
      TraW_N  1 illaLaallllapaAyAkd 19
                i ++ +a+llla++A A++
  EHT98581.1  6 I-ACALAALLLAGNASAAS 23
                4.455555566*****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1394.54
//
Query:       EHT98582.1  [L=209]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-21   75.3   1.7    8.1e-21   74.2   1.7    1.6  1  Arm-DNA-bind_3   Arm DNA-binding domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.016   15.1   0.0    1.3  1  Pan3_PK          Pan3 Pseudokinase domain
       0.14   12.4   0.1       0.25   11.6   0.1    1.5  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   1.7   1.4e-24   8.1e-21       1      73 [.       3      89 ..       3      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1.4e-24
  Arm-DNA-bind_3  1 LTdkaikaladsd.kklprd..GLglrvtpsGaktfvlryr...........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    L+++++++++++d +++  d  GL+l+v+++G+k+++++yr           +G +p+v+la+AR+k++e+++l+ qGiDP++e+k+
      EHT98582.1  3 LNARQVETAKPKDkTYKMADggGLYLEVSAKGSKYWRMKYRrpsdkkedrlaFGVWPTVTLAQARAKRDEAKKLLVQGIDPKAEQKE 89
                    7899****9988844333348*******999*******************766****99*************************998 PP

>> Pan3_PK  Pan3 Pseudokinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.7e-06     0.016      52     109 ..     105     162 ..      99     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-06
     Pan3_PK  52 rpefekdkkwsetgdryllkLFrdyvFhqvdeegkpvldlahvlscLnklDagveeki 109
                 r+ ++++k+wse     +l+  + y+F  + ++    l ++h+l+ + k+Da+ +  +
  EHT98582.1 105 REWHASNKRWSEDHRTRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDV 162
                 6667899*********************************************877655 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.2e-05      0.25       1      50 [.      99     147 ..      99     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
                      ..HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHH CS
  Phage_int_SAM_3   1 tFsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadi 50 
                      tF+ ++ eW +  k r++e  + +  ++++ +I P++g+  + +++++++
       EHT98582.1  99 TFETVAREWHASNK-RWSEDHRTRVLRYLELYIFPHIGSSDIRQLKTSHL 147
                      8***********88.********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1791.40
//
Query:       EHT98583.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98583.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98583.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98583.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98583.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98583.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98583.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98583.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98583.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98583.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98583.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98583.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98583.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98583.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98583.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98583.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98583.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98583.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2464.09
//
Query:       EHT98584.1  [L=184]
Description: hypothetical protein CKS_4977 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-09   37.0   0.7    2.9e-08   33.6   0.7    2.2  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.7   1.6e-12   2.9e-08       1     165 [.       3     165 ..       3     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.6e-12
                 EEEEE---BTT......B--......TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.H CS
  His_Phos_1   1 lyLvRHGetew......naegr..lqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdwegltta 91 
                 ++L+RHG+ ++      +a+g   ++   d  L  +G  +     +r    + +++++Spl Ra+   ++++     p ++d+ + E+    +     +
  EHT98584.1   3 IILMRHGKPAHpfarrlSAQGMadWCEAYDLSLVSDGPPERSINIAR----NAAVVVCSPLPRAHSSLAHLGL---RPHHVDALFSEVGIPLLRADRLQ 94 
                 67888888888666666555555666667777777776655443333....45588************99887...799********999987755333 PP

                 HHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGG CS
  His_Phos_1  92 eiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglplee 165
                      +++ l+a++   +   + + Esl++ ++R+++a ++l+a  e++tvl+  Hg + ++++++l +  +++
  EHT98584.1  95 LPTFVWQAILRAMWLCGY---AGETESLQHARERASRAADRLIALSEKGTVLLLGHGIMNKMIARELRKRGWQA 165
                 333333355555555555...4559****************************************999777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1428.57
//
Query:       EHT98585.1  [L=464]
Description: major facilitator family transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-31  107.3  25.4    2.3e-29  102.6  25.4    2.0  1  Sugar_tr  Sugar (and other) transporter
    1.5e-29  103.1  68.3    1.6e-25   89.8  38.0    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6  25.4   2.5e-33   2.3e-29      49     446 ..      79     458 ..      36     463 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 2.5e-33
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++ s+ ++ + iG+lf+g+lgdr GRk +++++++l+ +++ l+++++++     ++   l++ R+  G+g+G++    ++ ++E+Ap + Rg + s+
  EHT98585.1  79 FATWSVGFIARPIGALFFGWLGDRKGRKVVMVTTIILMGASTTLIGLIPSYasigiWAPACLVLLRFSQGFGAGAELSGGTVMLGEYAPVRRRGLVSSV 177
                 5566778899*************************************999999999999**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-....TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH. CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsn....adgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqee 237
                   l+   G l+a+ + l + ++++    ++gwri++ +++v+al+ l ++  l+E+P +  +k +  e+++ +                  +++ e   
  EHT98585.1 178 IALGSNSGTLLASLVWLLVVQMDKqsllEWGWRIPFLSSAVIALVALWIRRNLRETPVFERKKAELAETRAQVIA----------------AHRSE--- 257
                 *******************8888889*****************999999********997776644444433333................22222... PP

                 ....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 238 ekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvil 334
                   a++++++++   ++++ ++v+l i+ +   + a+ ++  ++ + l ++ks   ++ +i + + f+++ +a +l+drfGRR ++ + ++  +i ++  
  EHT98585.1 258 --ADTRPFFQR---TRAFWTMVGLRIGENGPSYLAQGFIVGYVAKVLMVDKSvpTTAVFIASLLGFLIIPFAGWLSDRFGRRVVYRMFCLLLMIYAW-- 349
                 ..345678887...3689999*******************************766777788889999999999*********655333333333333.. PP

                 H..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHH.HHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHH CS
    Sugar_tr 335 givalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlan.flisllfpiiteaigggyvflvfaglavlfiif 432
                   +a+ l ++      ++i  i++ +al +lg+ +v +    E+f  + R++ +a+a  +  +++     l+   +++  g++++ +v+ ++++   + 
  EHT98585.1 350 --PAFTLLDTR--EPAIVIPVIVVGMALASLGIFGVQAAWGVEMFGVNHRYTKMAVAKELGSIISgGTAPLVAAAMLSYTGHWWSIAVYFSVMATIGFL 444
                 ..444444443..4789999999999*******************************998766551677788888888888****************** PP

                 HHHHS--STT--CC CS
    Sugar_tr 433 vfffvpetkgrtle 446
                 + f  pet gr+l 
  EHT98585.1 445 TTFVAPETRGRDLN 458
                 ***********996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8  38.0   1.8e-29   1.6e-25       2     316 ..      40     375 ..      39     384 .. 0.73
   2 !   27.2  22.3   1.9e-10   1.7e-06      22     177 ..     294     452 ..     282     463 .. 0.74

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.8e-29
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse..igllltl.....yalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa....sslw.l 87 
                 +l++++ +++++++g+a+  ++  d  + +++  + ll+++      +++  +++l++G+l+dr Gr+ v++++++l++++ +l++l++    +++w +
  EHT98585.1  40 WLGTAMEYADFALYGLAAG-IIFGDVFFPEQTpaMALLASFatwsvGFIARPIGALFFGWLGDRKGRKVVMVTTIILMGAStTLIGLIPsyasIGIWaP 137
                 7899999999999999999.55444333333333333444433222455669*****************************444444323436778855 PP

       MFS_1  88 ..llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeep 176
                   l++lr+ qG+gaga +++g +++ +++p ++rg++ +++++g++ G++l+ l+  l+++           Wr +f+  a+++l+a     l+++++ 
  EHT98585.1 138 acLVLLRFSQGFGAGAELSGGTVMLGEYAPVRRRGLVSSVIALGSNSGTLLASLVWLLVVQ-MDkqsllewgWRIPFLSSAVIALVA-----LWIRRNL 230
                 99*****************************************************997773.3346666666***************.....5555555 PP

       MFS_1 177 perkrkspkeee.kgtgpaplvp.awkallkdpvl.w.illialllfffgfsg....lltllplylqevlgls.glllaglllallalvgailallagr 266
                 +e + ++ k+ e +   +a+++  + ++  ++p++    +++++++  +g +g    +  ++  y+ +vl  + ++ +++  + +++l+g+ + ++ag+
  EHT98585.1 231 RETPVFERKKAElAE-TRAQVIAaHRSEADTRPFFqRtRAFWTMVGLRIGENGpsylAQGFIVGYVAKVLMVDkSVPTTA--VFIASLLGFLIIPFAGW 326
                 555555555554322.3333333457777777766414455555555455555554444444447777777778777888..899999999999***** PP

       MFS_1 267 lsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgf 316
                 lsdr+grr    +++lll++ a   + l  t ++++ +++++++G++l+ 
  EHT98585.1 327 LSDRFGRRVVYRMFCLLLMIYAWPAFTLLDTREPAI-VIPVIVVGMALAS 375
                 *******************************55555.5577777886554 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 1.9e-10
       MFS_1  22 alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa........sslwlllvlrvlqGlgagalfpagaaliad 112
                 ++a+ l +++s+  +++ + +l+ ++ ++++G+lsdrfGrr v+ +  ll+ +  ++++f+        + +++++v+ +l++lg   +f + aa+ ++
  EHT98585.1 294 YVAKVLMVDKSVPTTAVFIASLLGFLIIPFAGWLSDRFGRRVVYRMFCLLLMIY-AWPAFTlldtrepaIVIPVIVVGMALASLG---IFGVQAAWGVE 388
                 666777788888888999999999******************999999999999.777774445344334466777777777777...79999****** PP

       MFS_1 113 wfpkeergraigll.sagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepp 177
                 +f  ++r   ++++  +g+ ++   +pl++++++s+ g W ++ + + +++ ++f+     ++++++
  EHT98585.1 389 MFGVNHRYTKMAVAkELGSIISGGTAPLVAAAMLSYTGhWWSIAVYFSVMATIGFL---TTFVAPET 452
                 ****8887777776267888888***********9999955555555555555555...44444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3102.22
//
Query:       EHT98586.1  [L=341]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-33  115.1   0.3      1e-32  113.7   0.1    1.7  2  Peripla_BP_3  Periplasmic binding protein-like domain
      3e-29  102.3   0.0    3.9e-29  102.0   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      7e-16   58.6   0.0    1.5e-15   57.5   0.0    1.5  2  Peripla_BP_4  Periplasmic binding protein domain
    8.1e-14   51.1   0.7    1.4e-13   50.4   0.7    1.4  1  LacI          Bacterial regulatory proteins, lacI family


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.78   3.5e+03      83     102 ..      38      56 ..      22      79 .. 0.62
   2 !  113.7   0.1   2.3e-36     1e-32       2     143 ..     176     313 ..     175     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.78
                   CCHHHHHHHHHCCTT--TTT CS
  Peripla_BP_3  83 DelAlgvlqalreaglrvPe 102
                   D++ + vl+a+++ g+r P+
    EHT98586.1  38 DATRQRVLAAIEQTGYR-PN 56 
                   45555666666666666.53 PP

  == domain 2  score: 113.7 bits;  conditional E-value: 2.3e-36
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqalklaalPtAviaasDelAlgvlqalreag 97 
                    hL+++G++++++i+  g+r+  ++++r +g+r+al+++glp ++  + +++++ +++++aal ++   + ++ P+A++a ++ +A+g ++a+ ++g
    EHT98586.1 176 SHLLSHGYQQVGMIS--GPRDMLNAQDRIQGWRDALRAYGLPADDANIFPATYTREGGYQAALrMI---ASKRVPRALFASNEGQAIGCIRAFSQHG 267
                   7**************..*********************************************9333...44448*********************** PP

                   --TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_3  98 lrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldl 143
                   lrvP+d+++++f++++ +a+++P+lTtvrqp++e++r+a+ +l + 
    EHT98586.1 268 LRVPDDVALVCFNGTDQSAYHVPALTTVRQPVKEMARCAIHMLKAW 313
                   ******************************************9865 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   8.6e-33   3.9e-29       2     223 ..      68     281 ..      67     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 8.6e-33
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPc 97 
                   ++ glv+p+ ++Pf +++   + ++  +hg  +ll  ag++ + + + i+ l+++++dgl +++ d + + i   ++sg p ++l+++  +p gv +
    EHT98586.1  68 KTFGLVVPNISNPFVASMAHMLLQESLNHGHVMLLGDAGDDRKRElELIQGLLNRQVDGLFYTSVDRH-PFIYIIKASGTPLVMLDRVDPQP-GVSM 162
                   678***************************9999999999999999**********************.******999**********8888.**** PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHHH CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindeaa 192
                    + d+  a+ + t +L++ g+++ + +++gp+  l a+ r qG+++al++ Gl+  d ++   + ++e++++a+  ++ s+  P   a+ a n+  a
    EHT98586.1 163 LRVDERDAAFQVTSHLLSHGYQQ-VGMISGPRDMLNAQDRIQGWRDALRAYGLPADDANIFPATYTREGGYQAALRMIASKrvPR--ALFASNEGQA 256
                   ***********************.********************************************************99***..********** PP

                   HHHHHHHHHTT.--GGGEEEEEESSGGGHHH CS
  Peripla_BP_1 193 lGavlalkkeGrlkikeevdsfiesvvvydg 223
                   +G ++a  ++G l+ +++v     ++v ++g
    EHT98586.1 257 IGCIRAFSQHG-LRVPDDV-----ALVCFNG 281
                   ***********.*******.....6665555 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.6   2.7e+03     192     208 ..      38      54 ..      12      60 .. 0.68
   2 !   57.5   0.0   3.4e-19   1.5e-15       1     252 [.      70     312 ..      70     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.6
                   CCHHHCHHHHHHHTTTT CS
  Peripla_BP_4 192 dgmaegalealeaagla 208
                   d++ + +l+a+e++g++
    EHT98586.1  38 DATRQRVLAAIEQTGYR 54 
                   34444678888888875 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 3.4e-19
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   +g+vv++ snpf+ ++  +l +     g    + gda+ d +++ + i+ +++++vdg+  ++vd     p++  +ka G p v  d+   +  +++
    EHT98586.1  70 FGLVVPNISNPFVASMAHMLLQESLNHGHVMLL-GDAGDDRKRELELIQGLLNRQVDGLFYTSVDR---HPFIYIIKASGTPLVMLDRV--DPQPGV 160
                   799***********9999999999988887777.9******************************8...89999999************..****** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH....-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEE CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke....ypgikivaevaganwdaekaqqalealltanp.ldgila 189
                   +    d+ +a+ +    l+++      +v +++G  +  na++ri+g r++l++    + + +i +    a +++e ++qa+  +++ +    + +a
    EHT98586.1 161 SMLRVDERDAAFQVTSHLLSHGY---QQVGMISGPRDMLNAQDRIQGWRDALRAyglpADDANIFP----ATYTREGGYQAALRMIASKRvPRALFA 250
                   *********************99...67**************************666555666666....589**************55446***** PP

                   SSCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_4 190 andgmaegalealeaagl..agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelava 252
                    n g a+g ++a+++ gl   ++v+++ + +t+++   + + t   tv q+ +e+++ a+ +++a
    EHT98586.1 251 SNEGQAIGCIRAFSQHGLrvPDDVALVCFNGTDQSAYHVPALT---TVRQPVKEMARCAIHMLKA 312
                   ******************9666677**************9999...****************987 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.7   3.2e-17   1.4e-13       4      46 .]      13      56 ..      10      56 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 3.2e-17
                HHHHHCTS-HHHHHHHCTTS.SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  4 DVArlAGVSkaTVSrvLnnk.erVseetrerVeaameelnYiPn 46
                DVA++AG S+a VS+v+nn  + V+++tr+rV+aa+e+ +Y+Pn
  EHT98586.1 13 DVAKAAGTSVAVVSYVINNGpRPVADATRQRVLAAIEQTGYRPN 56
                ******************99899********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2619.66
//
Query:       EHT98587.1  [L=328]
Description: inosine-uridine preferring nucleoside hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-57  194.6   0.1    3.4e-57  194.3   0.1    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.3   0.1   1.9e-61   3.4e-57       1     301 [.       2     313 ..       2     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 194.3 bits;  conditional E-value: 1.9e-61
                   EEEEEEE--S.......HHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSS......S-SHHHHTTT CS
  IU_nuc_hydro   1 rkvilDtDpG.......iDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllre......kaaaeihGed 84 
                   +++i+D+DpG       +DD lAl lala+ p + l  ittvaGn++ + ++r a +++ +lg    +pv++Ga + l+++              ++
    EHT98587.1   2 KRLIIDCDPGngiaganTDDGLALSLALAS-PGLSLELITTVAGNTPSDVGARVAKDLMARLG-CA-VPVVQGATRALCEDpapwraL------LDK 89 
                   579******988777777*********995.****************************6666.66.******999887764333221......222 PP

                   SSTSS.......-.--S.SHCSCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SSS--SSSSSS-HHHHHS CS
  IU_nuc_hydro  85 Glgdv.......llpep.erkaesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaftarGNvtpvaEfNifvD 173
                    + +          p+p + +a+ ++a++a+ +++     +pge+tl+a+GplTN+Ala+++ p +a+ v+++viMGG f  +   +  +++N+ vD
    EHT98587.1  90 RVEQLdlmalwqGVPQPaALPADGNDAAEAMGQLI---CDNPGEITLIAIGPLTNVALAMQRFPAMAESVAEIVIMGGVFALE---DYIKDTNFGVD 180
                   222113333344455554558889999****9999...888989**********************************99966...557******** PP

                   HHHHHHHHHT.S-E.EEEE-HHHHTTSCHEECHHHHHHHHCSTCBHHHHHHHHHHHHHHHHHHHHHSSEEE-HHHHHHHHHH-GGGEEEEEEEEEEE CS
  IU_nuc_hydro 174 PeAAkiVles.apvkitlvpldvthkvqalltseeveelaalekglgafladllefyikaykeaegsdgaplhDplavavaldpelvttkrlavdve 269
                   PeAA+ Vl+s a +  tlvp+dvt+  q+ lt++++++l+++  +l++f++++l+ +i++  ++++  g+ +hD+l va++l++++   ++++vd+e
    EHT98587.1 181 PEAAHQVLHSgAAI--TLVPMDVTT--QTMLTQADLKRLTRHAHPLTRFVRETLQPWIDYSMQTRHLPGCWIHDALVVAWLLNQRVAWGTDYRVDIE 273
                   ********986665..********9..87899******8777677777***********9999999****************99999779******* PP

                   SSSSTTTTEEEEETSTT........TTS--EEEEEEE-HH CS
  IU_nuc_hydro 270 leggltrGrtvvdlrrl........kkaknvkvatevdve 301
                   l+ g trG++   ++ l        ++ + v+v+ +vd++
    EHT98587.1 274 LRPGATRGKSWRYRQPLrldvgippDSGALVHVLHSVDNA 313
                   ********99655555599999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2560.96
//
Query:       EHT98588.1  [L=406]
Description: hypothetical protein CKS_4981 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-47  160.3  68.9    4.7e-39  134.3  40.6    2.0  2  MFS_1       Major Facilitator Superfamily
    1.3e-36  126.5  29.2    2.7e-27   95.7   8.5    2.1  2  Sugar_tr    Sugar (and other) transporter
    3.1e-05   23.0  28.5    0.00013   21.0   9.4    2.4  3  MFS_1_like  MFS_1 like family
    7.1e-05   21.9   1.7     0.0028   16.6   0.0    2.4  2  MFS_5       Sugar-tranasporters, 12 TM
  ------ inclusion threshold ------
      0.052   12.2  28.5      0.099   11.2   3.2    3.2  3  ATG22       Vacuole effluxer Atg22 like
       0.91    7.7   8.8      0.055   11.8   1.1    2.6  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3  40.6   1.6e-42   4.7e-39       8     347 ..      22     347 ..      16     350 .. 0.89
   2 !   39.8  20.3   8.8e-14   2.6e-10       2     175 ..     218     391 ..     217     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: 134.3 bits;  conditional E-value: 1.6e-42
       MFS_1   8 salarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpag 106
                  a++++il ++l+  la+ ++ s++ ++ ++ l  ++  +++l++Gr+++++Gr+++l+l +++f+++ ll +++++++++l++rv+ G+++g+++ ++
  EHT98588.1  22 DAFDFFILVFVLS-NLAQYFHNSVTDVSVAIMLTLAVRPLGALLFGRMAEKYGRKPILMLNIVFFSAFELLSAWSPTFTAFLAFRVFYGIAMGGIWGVA 119
                 5799999999999.9*****************************************************55555655555******************** PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallk 205
                  +l+ +  p++ rg++ gl++ag+ +G++l+ ++ gl+ + +gWr++f+i a+  ll+     +++ +++++ +  + +++    + ++l p    +l+
  EHT98588.1 120 SSLAMETIPDRSRGLMSGLFQAGYPCGYLLASIVFGLVFDMVGWRGMFLIGAVPILLLPF---IYFKVPESPVWLAARERK----ESSALMP----VLR 207
                 *********************************************************977...9************99999....9999999....666 PP

       MFS_1 206 dpvlw.illialllfffgfsg...lltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavts 298
                 +   w i+++++ll+++++++   +  l p++l+ ++ ++  ++ ++++++ ++a++g   ++++g ls r+gr+r++++a ll+l ++ ++a+ + + 
  EHT98588.1 208 QH--WkICIYMVLLMACFNFFshgTQDLYPTFLKVQHQFDahTVSIIAIAYNIAAMLG---GIFFGTLSERIGRKRAIIIAALLTLPVLPLWAFSSGS- 300
                 66..77677777777655555788****************998888888899999999...9************999999999999999999999999. PP

       MFS_1 299 savllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagsl 347
                    +++  + +l+ f +  +++ + +++++l+p ++++ + g++  +g+l
  EHT98588.1 301 ---WTIGlGAFLMQFMVQGAWGVIPTYLNELVPGNARAVLPGFVYQLGNL 347
                 ...44443777789977778*************99999888887755554 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 8.8e-14
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 ll+a++++++ ++  +  + +l+ +++++++++++++ +y ++a+++ +++G ls+r+Gr+r +++++ll++   l l+ f+s++w++ ++ +l+ ++ 
  EHT98588.1 218 LLMACFNFFSHGTQDLYPT-FLKVQHQFDAHTVSIIAIAYNIAAMLGGIFFGTLSERIGRKRAIIIAALLTLPV-LPLWaFSSGSWTIGLGAFLMQFMV 314
                 6788888888888555555.777788899*********************************999999999999.5555478****8888888899999 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpee 175
                  +++ ++ +++ +++p++ r+   g+++   +l a + + l + +a++ g  +   ++ +++ +a++ + ++ + +e
  EHT98588.1 315 QGAWGVIPTYLNELVPGNARAVLPGFVYQLGNLIASVNATLQSRIAEAHGGNYGLGMAIVAGTVAVLiCLFVAFGRE 391
                 9*********************************************6666544433333333333332333444443 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   8.5   9.1e-31   2.7e-27      43     207 ..      42     200 ..      10     208 .. 0.89
   2 !   36.8  12.7   6.9e-13   2.1e-09      22     194 ..     226     392 ..     212     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 9.1e-31
                 H...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  43 essvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 +s +++++   ++l+++ +G+l++g +++++GRk++l+  +v+f++  +l+a+++   ++ ++++ Rv+ Gi++G++ ++++ ++ E  p++ Rg + +
  EHT98588.1  42 NSVTDVSVAIMLTLAVRPLGALLFGRMAEKYGRKPILMLNIVFFSAFELLSAWSP---TFTAFLAFRVFYGIAMGGIWGVASSLAMETIPDRSRGLMSG 137
                 355666777778899****************************************...9**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHH CS
    Sugar_tr 142 lyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeea 207
                 l+q ++  G l+a+i+   + ++ +   wr ++ + +vp lll ++ + +PESP +l  ++++e +
  EHT98588.1 138 LFQAGYPCGYLLASIVFGLVFDMVG---WRGMFLIGAVPILLLPFIYFKVPESPVWLAARERKESS 200
                 **************98877777777...*********************************99954 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 6.9e-13
                 THHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHH CS
    Sugar_tr  22 fltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlas 120
                 f+  ++ ++  +l+++++ ++    ++++i+ ++++ a++G++f+g+l++r+GRk +++iaa+l++    l a++      + + +g +l+ + v +a 
  EHT98588.1 226 FSHGTQDLYPTFLKVQHQFDA---HTVSIIAIAYNIAAMLGGIFFGTLSERIGRKRAIIIAALLTLPVLPLWAFSS---GSWTIGLGAFLMQFMVQGAW 318
                 444445555555555555555...4899*************************************99888889988...88****************** PP

                 HHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHH...CCHHHHHHHHHHGGGS--- CS
    Sugar_tr 121 vlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillg...lqlvpallllilllflPES 194
                 +++P+y++E+ p + R  l     + +++G l+a++  +  +++ +a g  + lg   ++   a+l+++++ f +E+
  EHT98588.1 319 GVIPTYLNELVPGNARAVL---PGFVYQLGNLIASVNATLQSRIAEAHGGNYGLGmaiVAGTVAVLICLFVAFGRET 392
                 ****************876...4445556666666655555555553333344440004455788999999998887 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  10.3   2.8e-06    0.0084     226     384 ..      10     168 ..       5     169 .. 0.76
   2 !   21.0   9.4   4.2e-08   0.00013     157     354 ..     146     341 ..     144     352 .. 0.82
   3 ?   -3.9   0.3       1.6   4.8e+03     260     280 ..     367     387 ..     364     388 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-06
  MFS_1_like 226 eviifllvalilgmswgiienFlflYL.kelgasntllGslvalgv.vaeiplfffaeklleklGhvklliiallayilrfllyaii.enawlvlpiev 321
                 +v++ +++ + l ++  +i  F+   L +    s t ++++++l+  v  +  ++f  ++ ek+G   +l++ ++++ + f l++++   +   l + v
  EHT98588.1  10 NVAFACFASWPLDAFDFFILVFVLSNLaQYFHNSVTDVSVAIMLTLaVRPLGALLF-GRMAEKYGRKPILMLNIVFFSA-FELLSAWsPTFTAFLAFRV 106
                 56666666666777777777775555533334455555555555541344555555.5899************998877.5555555488999999*** PP

  MFS_1_like 322 LhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflFr 384
                 ++gi++g +w++a + + + +p++ ++ + gl+++ y   G  l s++ Gl++d+ + + +F 
  EHT98588.1 107 FYGIAMGGIWGVASSLAMETIPDRSRGLMSGLFQAGYP-CGYLLASIVFGLVFDMVGWRGMFL 168
                 *********************************99865.59*************999888775 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.2e-08
  MFS_1_like 157 GyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllv..alilgmswgiienFlflYL. 252
                 Gy ++++++G+++d++     ++  +l+ +  +l++ ++ + +++   +  + + ++  ++l+ +l+++  i++ +v  ++   +++   +  +  +L 
  EHT98588.1 146 GYLLASIVFGLVFDMVGWR--GM--FLIGAVPILLLPFIYFKVPESPVWLAARERKE-SSALMPVLRQHWKICIYMVllMACFNFFSHGTQDLYPTFLk 239
                 9**************9984..43..66667778889999988888888888877776.56699999987555433330023334444445566788997 PP

  MFS_1_like 253 kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgq 351
                  ++++   +++++ +   +a +   +f   l e++G  + +iia l++   + l a+ +  w + +  +L  + +   w+++ +y ++++p +++a + 
  EHT98588.1 240 VQHQFDAHTVSIIAIAYNIAAMLGGIFFGTLSERIGRKRAIIIAALLTLPVLPLWAFSSGSWTIGLGAFLMQFMVQGAWGVIPTYLNELVPGNARAVLP 338
                 899*********99999999999999999****************************************************************999887 PP

  MFS_1_like 352 gll 354
                 g++
  EHT98588.1 339 GFV 341
                 765 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.6
  MFS_1_like 260 tllGslvalgvvaeiplfffa 280
                 + lG++++ g+va ++ +f+a
  EHT98588.1 367 YGLGMAIVAGTVAVLICLFVA 387
                 668889999999998888875 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.6     0.006        18      87     184 ..      63     159 ..      31     181 .. 0.68
   2 !   16.6   0.0   9.5e-07    0.0028      52     108 ..     230     286 ..     188     291 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.006
       MFS_5  87 tivgsladkfgrkracltyailyila..citkhsgeykvlmigrvlggiatsllysafeswlvaehnkrgfddsllsivfskaiflgnslvaiiaglaa 183
                  + g +a+k+grk    +  i++  a   ++  s+ +  ++  rv+ gia   ++    s  +     r  +  l+s  f      g  l +i+ gl+ 
  EHT98588.1  63 LLFGRMAEKYGRKPIL-MLNIVFFSAfeLLSAWSPTFTAFLAFRVFYGIAMGGIWGVASSLAMETIPDR--SRGLMSGLFQAGYPCGYLLASIVFGLVF 158
                 4668999999998755.5555554431267889999999999999999998888776555443332222..3445555555555555555555555555 PP

       MFS_5 184 n 184
                 +
  EHT98588.1 159 D 159
                 5 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.5e-07
       MFS_5  52 lqgpyvyalyesygldkgdieilfiagfgssllfgtivgsladkfgrkracltyail 108
                  q  y  +l  ++ +d + + i+ ia   +++l g + g+l+++ grkra ++ a+l
  EHT98588.1 230 TQDLYPTFLKVQHQFDAHTVSIIAIAYNIAAMLGGIFFGTLSERIGRKRAIIIAALL 286
                 3555666788999*************************************9998765 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  11.3   0.00011      0.32     296     464 ..      22     181 ..       7     188 .. 0.80
   2 ?   11.2   3.2   3.3e-05     0.099     274     378 ..     205     305 ..     190     322 .. 0.75
   3 ?    0.8   0.3     0.047   1.4e+02     195     222 ..     366     393 ..     348     402 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
       ATG22 296 dgiatvsstavlfakte.lkmstaklillsivaviaavlGaflwplvsrrlnlktkktl.laiivlfeliplyGllGiilgkiGlkqpwEfyvlavvyg 392
                 d++  ++ ++vl   ++ ++ s +++ + ++++ ++  lGa+l+ +++++++ k+  +l ++++ +fel+ ++                 f ++ v+yg
  EHT98588.1  22 DAFDFFILVFVLSNLAQyFHNSVTDVSVAIMLTLAVRPLGALLFGRMAEKYGRKPILMLnIVFFSAFELLSAWSPT-----------FTAFLAFRVFYG 109
                 6666777788887766636777778**************************9996655423444556666666553...........356899****** PP

       ATG22 393 lvlgglssysRslfseLiPrGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpl 464
                 +++gg+  ++ sl  e iP+ +     +L++    ++ ++ ++++gl+ D+ g   + ++  + +l++p++ 
  EHT98588.1 110 IAMGGIWGVASSLAMETIPDRSRGLMSGLFQAGYPCGYLLASIVFGLVFDMVGWRGMFLIGAVPILLLPFIY 181
                 **************************************************9996555555555566666654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.3e-05
       ATG22 274 tlkqarklkdvllfLva.wfllsdgiatvsstavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGi 371
                 +l+q +k+   ++ L+a + ++s g +    +  +f k + ++ + ++ ++ i   iaa+lG + +  +s+r++ k + +++a ++ + ++pl+++   
  EHT98588.1 205 VLRQHWKICIYMVLLMAcFNFFSHGTQD---LYPTFLKVQHQFDAHTVSIIAIAYNIAAMLGGIFFGTLSERIGRK-RAIIIAALLTLPVLPLWAFSSG 299
                 5555555554444444414467777665...666788999999******************************999.9999**************9643 PP

       ATG22 372 ilgkiGl 378
                  ++ iGl
  EHT98588.1 300 SWT-IGL 305
                 333.454 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.047
       ATG22 195 slGlaigylgailvqiisilivialgst 222
                 ++Gl++  ++++++++i++++ +++++ 
  EHT98588.1 366 NYGLGMAIVAGTVAVLICLFVAFGRETR 393
                 79******************99887765 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3      0.14   4.1e+02     487     522 ..     125     159 ..      92     161 .. 0.54
   2 ?   11.8   1.1   1.8e-05     0.055     280     352 ..     199     269 ..     187     296 .. 0.80
   3 ?   -1.4   0.0      0.18   5.4e+02     183     242 ..     340     394 ..     332     405 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.14
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 487 RcVkkedksfalGlqlllirllgliPgPiifGaiiD 522
                  +++++ + +  Gl ++   + g++ + i+fG ++D
  EHT98588.1 125 ETIPDRSRGLMSGLFQAGYPC-GYLLASIVFGLVFD 159
                 555555555555555555555.66666666666655 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 280 lkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgG 352
                  + ++++l++  k  i+++++++  +  +   G     p +l +q +  a++ ++++ +++i ++  Gi++g 
  EHT98588.1 199 SSALMPVLRQHWKICIYMVLLMA--CFNFFSHGTQDLYPTFLKVQHQFDAHTVSIIAIAYNIAAMLGGIFFGT 269
                 55566666666666666655555..6666677999999*******************9***********9985 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.18
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 183 lGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaiplffFPkelpk 242
                 + + lG l++++  +++s+i      +   g + lg+ i++  ++++  ++++F +e ++
  EHT98588.1 340 FVYQLGNLIASVNATLQSRI-----AEAHGGNYGLGMAIVAGTVAVLICLFVAFGRETRG 394
                 55556666665554442222.....34556777799999999999999999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3038.24
//
Query:       EHT98589.1  [L=154]
Description: hypothetical protein CKS_4982 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-27   94.9   0.0    4.2e-27   94.7   0.0    1.0  1  tRNA_edit  Aminoacyl-tRNA editing domain
  ------ inclusion threshold ------
      0.061   13.5   0.0       0.14   12.3   0.0    1.6  1  DUF1858    Domain of unknown function (DUF1858)


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   4.7e-31   4.2e-27       4     122 ..      26     141 ..      24     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 4.7e-31
   tRNA_edit   4 tktieelaaalgvdpsaiaKtlvlkdkkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkeyptv 102
                 t+t+e +a+  gv+p++iaKtl lk+ k+e +lv+++gd +ld  kl++++g +k+r+ s +e+   +g+++Ggv+P+gl ++ v+v+ D slk+ ++v
  EHT98589.1  26 TATVEMAARVHGVEPGQIAKTLSLKV-KNEVILVVTRGDARLDNRKLKAVMG-AKARMLSVDEVISWTGHPVGGVCPFGL-ENPVTVYCDISLKSFDEV 121
                 79***********************7.888**********************.***************************.8***************** PP

   tRNA_edit 103 vvgagengatlelspedlrk 122
                 + +ag+ ++ +++sp+++ +
  EHT98589.1 122 LPAAGSIHSAVRISPQQMAE 141
                 ***************98765 PP

>> DUF1858  Domain of unknown function (DUF1858)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05      0.14      41      57 ..      26      42 ..      19      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                HSBHHHHHHHHT--HHH CS
     DUF1858 41 vetleqaakvhgidlde 57
                 +t+e+aa+vhg+++ +
  EHT98589.1 26 TATVEMAARVHGVEPGQ 42
                68***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1162.14
//
Query:       EHT98590.1  [L=364]
Description: GGDEF domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-46  155.9   0.2    9.6e-46  155.5   0.2    1.2  1  GGDEF      Diguanylate cyclase, GGDEF domain
     0.0034   17.6   0.1     0.0061   16.8   0.1    1.4  1  GGDEF_2    GGDEF-like domain
  ------ inclusion threshold ------
       0.18   12.0   0.1       0.95    9.6   0.0    2.0  2  Enolase_N  Enolase, N-terminal domain
       0.43    9.8   6.5      0.084   12.2   2.0    1.9  2  S_4TM      SMODS-associating 4TM effector domain
        1.1    9.9   4.9       0.24   12.0   0.4    2.2  2  DUF2645    Protein of unknown function (DUF2645)


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.2   2.7e-49   9.6e-46       2     161 .]     192     346 ..     191     346 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 2.7e-49
                 SB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHH CS
       GGDEF   2 ahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaela 100
                 ++D+lTgL+NRr l+++l++ l++++    s  vllld+d+Fk++nd+yGh++GD+ L +v+ ++++++r++d+v R+gg+eF++l+++++ + a +la
  EHT98590.1 192 MLDPLTGLYNRRGLKNRLDNILDNHAG---SHYVLLLDIDHFKAYNDNYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNASIAMKLA 287
                 68**********************954...6679***************************************************************** PP

                 HHHHHHHHCS-EEE.TTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 101 erirrllaklkepv.elsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 erir+ + +l++p+  ++  +++vtis+Gia +    ++++++ + +Ad+aly aK++grn+
  EHT98590.1 288 ERIRQYVVNLEIPHmFNERVSTHVTISAGIAPIY---DDEFDQAVANADRALYVAKNQGRNT 346
                 *************966778899***********6...78889******************95 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.7e-06    0.0061      19     114 ..     216     336 ..     209     338 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.7e-06
     GGDEF_2  19 ldgpyvvvviel...........eedaerllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg..............lsvr 90 
                 ++g+++v+++++           +  ++++l++++ a+r++  ++d+++   g+++ +l++  +++ a +l+er+++ +                ++++
  EHT98590.1 216 HAGSHYVLLLDIdhfkayndnygHAMGDQALARVSVAIRDAvrSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNleiphmfnervsthVTIS 314
                 6899********777666655542255557777777777777466777777888999999999988888999999966666666667777777799999 PP

     GGDEF_2  91 iGiGspveglaglrrSyreArrAl 114
                 +Gi ++++  +++ ++   A rAl
  EHT98590.1 315 AGIAPIYD--DEFDQAVANADRAL 336
                 99999999..58888888888887 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00027      0.95      38      78 ..     249     288 ..     234     299 .. 0.86
   2 ?   -0.3   0.0      0.32   1.1e+03      71     110 ..     306     349 ..     294     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
                 BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTT CS
   Enolase_N  38 aStgekealelrDgdkkrylgkgvekavenvnekiapalig 78 
                  S++ ++a+  rD   +ry+g+ ++  + nvn  ia +l +
  EHT98590.1 249 VSVAIRDAVRSRDV-VTRYGGEEFLVLMTNVNASIAMKLAE 288
                 689999*******7.8********************99964 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.32
                 THHHHHT...TSBTT-HHHHHHHHHHHH-STT.-TTT-HHHHHH CS
   Enolase_N  71 kiapali...gldvtdqeeiDkllielDgten.ksklGaNaila 110
                 +++ +++   g+ +    e+D+++ ++D +    ++ G+N+ila
  EHT98590.1 306 RVSTHVTisaGIAPIYDDEFDQAVANADRALYvAKNQGRNTILA 349
                 55555533446777788899999999999865367889999997 PP

>> S_4TM  SMODS-associating 4TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.21   7.5e+02      32      75 ..      16      61 ..       4      69 .. 0.63
   2 ?   12.2   2.0   2.3e-05     0.084     158     212 ..      84     138 ..      82     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
       S_4TM 32 lrvilsvvlaivlsvlav..lvpslktylallgllwllldvlvldr 75
                l+++l ++l +++s++ +  l++++ t +++ +++++++++++l++
  EHT98590.1 16 LSFMLFLFLNAAVSLFCLlpLAENNETQVTVPVIMVAFFSMTMLAT 61
                5666666666666665554566667777777777777777777765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.3e-05
       S_4TM 158 Wdsrlrrryaklllfalvlwillvlvvgliknlslsdlllsvivpllpllllalk 212
                 W   +++ry+ + l+   ++i+++l v++i+ + lsd+l+++++ ++p++l +l 
  EHT98590.1  84 WAWHIQHRYQFVSLTDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPAMLTVLM 138
                 888999********************************************99875 PP

>> DUF2645  Protein of unknown function (DUF2645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   6.7e-05      0.24      42      97 ..      36      94 ..      25      95 .. 0.80
   2 ?   -1.3   0.5         1   3.6e+03      62      62 ..     133     133 ..     102     178 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
     DUF2645 42 lelddsrdvaviaalllliPlll...vlvkkklksaflvvialvillYiiWrFflRfaf 97
                l ++++++v+v ++++ ++ + +   +l+k klk   l+ +al++   + W+   R++f
  EHT98590.1 36 LAENNETQVTVPVIMVAFFSMTMlatCLIKAKLKLPLLNPVALILGGLWAWHIQHRYQF 94
                4567777777777776666665566799*****************************99 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1
     DUF2645  62 l 62 
                 +
  EHT98590.1 133 M 133
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3067.21
//
Query:       EHT98591.1  [L=77]
Description: hypothetical protein CKS_4984 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-26   90.6   8.9    5.4e-26   90.5   8.9    1.0  1  DUF1435         Protein of unknown function (DUF1435)
  ------ inclusion threshold ------
      0.055   13.1   5.2      0.058   13.0   5.2    1.0  1  Peptidase_M50B  Peptidase M50B-like
        1.2    8.8   7.7       0.39   10.4   5.3    1.4  1  DUF4131         Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF1435  Protein of unknown function (DUF1435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   8.9     9e-30   5.4e-26       4      74 ..       4      74 ..       1      75 [. 0.96

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 9e-30
     DUF1435  4 krlesgWgvlLPavliallalaelsldqlrviivlallltvvmLyhkrlRHylLLPsclalagglalvlln 74
                 +l+s+W+ +L +++i++++l++ s+ q+r+++++allltv+mL+++r+RHy+LLPsclala+ la+++++
  EHT98591.1  4 IKLDSAWAGVLACAVIPAMTLWQPSFGQWRMMMLVALLLTVLMLFNQRMRHYVLLPSCLALASVLAAISVR 74
                589****************************************************************9986 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.2   9.8e-06     0.058      70     133 ..       9      74 ..       2      77 .] 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.8e-06
  Peptidase_M50B  70 llaGYlgpallGlllillsasgkarlllvllvllllvllllv..rnlfglvlllllgallllvlll 133
                     ++aG l++a++ ++ ++  + g++r+++ +++ll +++l+    r  ++l ++l+l+ +l+++++ 
      EHT98591.1   9 AWAGVLACAVIPAMTLWQPSFGQWRMMMLVALLLTVLMLFNQrmRHYVLLPSCLALASVLAAISVR 74 
                     78***********************99998888888888876347888888999999999999875 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.3   6.5e-05      0.39       4      52 ..      28      74 ..      24      77 .] 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.5e-05
     DUF4131  4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrap 52
                ++  + +++l++lll+ l+l+  ++r r  +ll  +l+la++ +a++++
  EHT98591.1 28 SFGQWRMMMLVALLLTVLMLF--NQRMRHYVLLPSCLALASVLAAISVR 74
                678899999999999999999..89999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 636.97
//
Query:       EHT98592.1  [L=343]
Description: 16S rRNA m2G1207 methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-60  203.3   0.0    2.6e-60  202.8   0.0    1.2  1  MTS              Methyltransferase small domain
    5.2e-56  189.1   0.0    1.6e-55  187.5   0.0    1.8  3  MTS_N            Methyltransferase small domain N-terminal
    5.8e-09   36.6   0.1    1.7e-08   35.0   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    3.3e-08   33.5   0.0      8e-08   32.2   0.0    1.6  2  Methyltransf_31  Methyltransferase domain
    4.2e-08   33.8   0.1    2.9e-07   31.2   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    0.00027   20.4   0.0    0.00046   19.7   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00044   20.9   0.0      0.001   19.7   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
     0.0017   18.3   0.0     0.0029   17.5   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
     0.0026   17.1   0.0     0.0065   15.8   0.0    1.5  1  Methyltransf_10  RNA methyltransferase
     0.0039   16.8   0.0      0.045   13.4   0.0    2.0  2  NodS             Nodulation protein S (NodS)
     0.0041   17.0   0.0     0.0076   16.1   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.026   13.8   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
      0.031   14.0   0.0      0.087   12.5   0.0    1.6  2  Methyltransf_16  Lysine methyltransferase
      0.037   13.7   0.0      0.055   13.2   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
       0.11   12.4   0.0       0.18   11.7   0.0    1.3  1  VirJ             Bacterial virulence protein (VirJ)


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.8   0.0   2.2e-63   2.6e-60       2     169 .]     167     333 ..     166     333 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.8 bits;  conditional E-value: 2.2e-63
                 EEEEEETTSTTTTS--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEE CS
         MTS   2 ltlktlpgvFskdklDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdl 100
                 lt++tlpgvFs+d+lD+Gs+lLl+t++ +++gkvlD+GcGaGv++a+l ++sp++++ l+dv+a+A+e++k++l+an+le+ev+as+v+++v+ ++fd+
  EHT98592.1 167 LTIHTLPGVFSRDGLDAGSALLLSTFTPHTKGKVLDIGCGAGVIAASLPAHSPKVRLWLCDVHAAAIEASKATLAANGLEGEVFASNVFSDVT-GRFDM 264
                 79*******************************************************************************************.***** PP

                 EEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSEEEEE CS
         MTS 101 ivsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkfkvlk 169
                 i+sNPPfh+g++t+l++a++li+ A ++L++gGeL+iVan +l+y+++l+e+fgn+ev+a+t++fkv++
  EHT98592.1 265 IISNPPFHEGTQTSLDAAQTLIRGAVKHLNSGGELRIVANAFLPYPQVLDETFGNHEVLAQTGRFKVYR 333
                 *******************************************************************96 PP

>> MTS_N  Methyltransferase small domain N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.0   1.3e-58   1.6e-55       1     156 []       8     162 ..       8     162 .. 0.98
   2 ?   -2.9   0.0       5.4   6.5e+03      24      49 ..     208     233 ..     194     266 .. 0.68
   3 ?   -2.5   0.0       4.1   4.9e+03      85     106 ..     282     303 ..     278     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 1.3e-58
                 HHHHHTTHHHHTT-EEEEEE---SSHHHHS--SEEEEEE..SBHHHHHHHHHHHGGG.EEE-SS--HH..TT-SEEEEE--SSHHHHHHHHHHHHTTS- CS
       MTS_N   1 SqvllRnlelfenksvllageieddlpkelkkasksvtvlsqdfnhaqalkkklkeekvefgleleae..skfdlvilylpKaKeeakylLalllsklk 97 
                 S+v+lR++++f++++vl+ag+++ddlp++l++as++v++  q+++h+q+l+++l++ ++++gl ++a+  + +d+++++++K+K+e++++L++lls l+
  EHT98592.1   8 SEVILRHSDEFSTRHVLFAGDLQDDLPAQLETASSRVHT--QQYHHWQNLSRRLGD-QARYGLVAQADdvQGCDTLVYFWTKNKPEVQFQLQNLLSLLP 103
                 9**************************************..**************9.8******999999***************************** PP

                 TT-EEEEEEEGGGTGGGHHHHHTTTS--EEE---TTEEEEEEE--S-----GGGG-EEE CS
       MTS_N  98 kgteilvVGenksGvksaekllaeylkvkKiDsARhCsLykaelekepkfdledwiksY 156
                 +g++++vVGen+sGv+sae +l+++++++KiDsAR+C+Ly+++lek+p+fd++ + ++Y
  EHT98592.1 104 VGCDVFVVGENRSGVRSAEGMLEQWVTLEKIDSARRCGLYHGRLEKQPAFDASPFGNRY 162
                 *****************************************************999888 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.4
                 SSHHHHS--SEEEEEE..SBHHHHHH CS
       MTS_N  24 ddlpkelkkasksvtvlsqdfnhaqa 49 
                   ++++l ++s +v  +  d + a+ 
  EHT98592.1 208 GVIAASLPAHSPKVRLWLCDVHAAAI 233
                 55677888888888887776665443 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.1
                 HHHHHHHHHTTS-TT-EEEEEE CS
       MTS_N  85 akylLalllsklkkgteilvVG 106
                 a+ l++ ++++l++g+e+ +V+
  EHT98592.1 282 AQTLIRGAVKHLNSGGELRIVA 303
                 7788889999******999996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.1   7.2e+03      34      46 ..      37      49 ..      19     100 .. 0.57
   2 !   35.0   0.0   1.5e-11   1.7e-08       1      97 []     200     297 ..     200     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.1
                     HHHHHHHHHHTTT CS
  Methyltransf_25 34 leaareraeeegl 46
                     le+a +r++ +++
       EHT98592.1 37 LETASSRVHTQQY 49
                     4444444433322 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 1.5e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GG...GSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lh...hlsdedlekalkeia 90 
                      vLd+GcG G +++ l ++ +k +++ +D+ ++++ea ++ ++++gl+ e+   ++  ++   g+fD+++s+   +h    +s + ++++++ + 
       EHT98592.1 200 VLDIGCGAGVIAASLPAHSPKVRLWLCDVHAAAIEASKATLAANGLEGEVFASNV--FSDVTGRFDMIISN-PpFHegtQTSLDAAQTLIRGAV 290
                      9***************99889***********************99999998888..445579*******5.5599443345566788999999 PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      ++L+ gG
       EHT98592.1 291 KHLNSGG 297
                      9999998 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.8   3.3e+03     102     128 ..       5      43 ..       2      70 .. 0.58
   2 !   32.2   0.0   6.7e-11     8e-08       3     109 ..     196     301 ..     194     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.8
  Methyltransf_31 102 kpggilliedpr............llaelpakveeeska 128
                      +p +++++++ +            l+++lpa++e  s  
       EHT98592.1   5 TPASEVILRHSDefstrhvlfagdLQDDLPAQLETASSR 43 
                      566666666666666666666666667777666665552 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 6.7e-11
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl.....naladpd 91 
                       + +vlD+GCG+G ++  l     pk ++ + D  + aie +++ ++ +gl+   F    + +        +fD+i+sn ++       l + +
       EHT98592.1 196 TKGKVLDIGCGAGVIAASLP-AHSPKVRLWLCDVHAAAIEASKATLAANGLEGEVFASNVFSDVT-----GRFDMIISNPPFhegtqTSLDAAQ 283
                      5679***************9.7789**************************96555555555577.....89*******888777768888888 PP

  Methyltransf_31  92 kileeiervlkpggilli 109
                        ++++ + l++gg+l i
       EHT98592.1 284 TLIRGAVKHLNSGGELRI 301
                      889999999999999987 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   1.4e+03      31      93 ..      35     102 ..      29     107 .. 0.73
   2 !   31.2   0.0   2.4e-10   2.9e-07       1      99 []     201     299 ..     201     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
  Methyltransf_12  31 saiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.....kdirevldnirklL 93 
                      +++e a+ + + ++ ++++n+  +  d +     ++ D v  +++l ++     +++++ l+n+ +lL
       EHT98592.1  35 AQLETASSRVHTQQYHHWQNLSRRLGDQARYGLVAQADDVQGCDTLVYFwtknkPEVQFQLQNLLSLL 102
                      56777888888888888888877777765555558888888888888888877777777777777766 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 2.4e-10
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.....kdirevldni 89 
                      L+iGcG G +++ l ++ p +++  +D++++aie+ k+ la+++ +     e++a +++++   + fD+++++  +h       +  + +++ +
       EHT98592.1 201 LDIGCGAGVIAASLPAHSPKVRLWLCDVHAAAIEASKATLAANGLEG----EVFASNVFSDVT-GRFDMIISNPPFHEGtqtslDAAQTLIRGA 289
                      8********************************99999999999855....444444443333.49******97777766889888899999** PP

  Methyltransf_12  90 rklLkpgGrl 99 
                       k+L+ gG l
       EHT98592.1 290 VKHLNSGGEL 299
                      *******976 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.8e-07   0.00046     161     233 ..     196     268 ..     185     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.8e-07
        PrmA 161 egeevlDvGtGSGiLaiaaakLgak...kvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadvivaN 233
                 ++ +vlD+G+G+G++a   ++ +++   +    D+   A++++k+ ++ N++e ++     +++++  ++++d+i++N
  EHT98592.1 196 TKGKVLDIGCGAGVIAA--SLPAHSpkvRLWLCDVHAAAIEASKATLAANGLEGEVFA---SNVFSdvTGRFDMIISN 268
                 4459**********764..44333311145678********************98844...3333223579*****99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   8.6e-07     0.001       1      94 [.     201     299 ..     201     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.6e-07
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-T..T-EEEEEEES-CCC-.....CCHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfed..nsfDlvvssevlhhv.....edpekalkei 84 
                      Ld+GcG+G +a+ l  +    r+  +D+ +++++++k+    +g     +++++     f d  + fD+++s+  +h       +  + +++ +
       EHT98592.1 201 LDIGCGAGVIAASLPAHSpkVRLWLCDVHAAAIEASKATLAANG-----LEGEVFASnVFSDvtGRFDMIISNPPFHEGtqtslDAAQTLIRGA 289
                      8**************88889***********************9.....7777776535888668********977776666668999999999 PP

                      HHHEEEEEEE CS
  Methyltransf_11  85 aRvLkpgGll 94 
                      ++ L  gG l
       EHT98592.1 290 VKHLNSGGEL 299
                      9999999976 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.5e-06    0.0029      14      79 ..     195     259 ..     188     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.5e-06
  Methyltransf_18  14 kgs.rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk 79 
                      +++ +v+DiG+  g++++ l  ++   +   +D+++ ++e++k++++ +gle   ev  s+ ++ ++
       EHT98592.1 195 HTKgKVLDIGCGAGVIAASLPAHSPKVRLWLCDVHAAAIEASKATLAANGLEG--EVFASNVFSDVT 259
                      44449**********************************************75..666677777664 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.4e-06    0.0065     102     194 ..     196     278 ..     185     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.4e-06
                      S--EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS---- CS
  Methyltransf_10 102 aqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhaslaea 194
                      ++ ++ldiG Ga  i   l ++    r   ++v   +++ +ka +++n  l++ +        +++f    ++  r+d+ + nPPfh+ ++ +
       EHT98592.1 196 TKGKVLDIGCGAGVIAASLPAHSPKVRLWLCDVHAAAIEASKATLAAN-GLEGEVFA------SNVFS---DVTGRFDMIISNPPFHEGTQTS 278
                      46789***********************9*******************.88887654......34555...55679***********865443 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.2   2.4e+02      92     149 ..      56     116 ..      31     126 .. 0.60
   2 !   13.4   0.0   3.7e-05     0.045      42     111 ..     195     266 ..     183     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.2
        NodS  92 swivsdvqqfstdekfdlivvae..vlyyiedvaelraavrnlvsllapd.gqlvfGsard 149
                 s    d  ++ + ++ d +  ++  v ++ +++ e++  ++nl+sll  + + +v G  r 
  EHT98592.1  56 SRRLGDQARYGLVAQADDVQGCDtlVYFWTKNKPEVQFQLQNLLSLLPVGcDVFVVGENRS 116
                 3344444455554454444443411444568889999********9976525677777665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.7e-05
        NodS  42 gsiadalevGcaaGalterlapyck..rltvvdvveeaiararervkesshiswivsdvqqf.stdekfdliv 111
                  + +++l++Gc aG ++  l  ++   rl + dv   ai+ ++  +     +   v   + f + + +fd+i+
  EHT98592.1 195 HTKGKVLDIGCGAGVIAASLPAHSPkvRLWLCDVHAAAIEASKATLAAN-GLEGEVFASNVFsDVTGRFDMII 266
                 56789***************99985337899*********999887653.33333332233315667777776 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.3e-06    0.0076      20      89 ..     194     268 ..     181     302 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.3e-06
  Methyltransf_23  20 lraggrvLdiGcGtGillevl.rengf.svtgvDlspeaveiae............kakkaqkdqfdeqeaaepqgkfdlIvlr 89 
                        ++g+vLdiGcG G  + +l +  ++  + + D   +a+e  +             a++ ++d +         g+fd I+++
       EHT98592.1 194 PHTKGKVLDIGCGAGVIAASLpAHSPKvRLWLCDVHAAAIEASKatlaanglegevFASNVFSDVT---------GRFDMIISN 268
                      68999**********887777544433445555555544444444454455555554444444444.........999999886 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.026      24     140 ..     156     274 ..     143     327 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
                     -HHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSS-GGG-S..EEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEE CS
  Methyltransf_2  24 slfeaikrdeeerakfnkglqessslvakkvleafdleglk..slvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefv 116
                     s f  +++ ++ +     g+ +   l a ++l  + +++ +  +++D+G G+G++a+   ++ P++++ + D+   + +A +   a++  + e+ 
      EHT98592.1 156 SPFGNRYQLNDLTIHTLPGVFSRDGLDAGSALLLSTFTPHTkgKVLDIGCGAGVIAASLPAHSPKVRLWLCDVHAAAIEASKATLAANGLEGEVF 250
                     556666666666666666666666666666666666554432279****************************8776666655444444444566 PP

                     ES-TTTS-----SEEEEESSGGGS CS
  Methyltransf_2 117 gGdffkdslPeaDaillkrvlhDw 140
                     + ++f d   + D+i+ +   h+ 
      EHT98592.1 251 ASNVFSDVTGRFDMIISNPPFHEG 274
                     677776666677777766666654 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.3   2.7e+03      95     130 ..      39      74 ..      30      82 .. 0.78
   2 ?   12.5   0.0   7.3e-05     0.087      46     101 ..     196     250 ..     182     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.3
  Methyltransf_16  95 alkskvkvevLdWgeeleedllekeevDlilaaDcv 130
                      + +s+v++++ +  ++l + l ++ ++ l+  aD v
       EHT98592.1  39 TASSRVHTQQYHHWQNLSRRLGDQARYGLVAQADDV 74 
                      467888888876558899999999999999999855 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.3e-05
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvk 101
                      +k +vl++G G+G++  ++ ++ p+++++l D++  ++e  k  +++n+  l+ +v 
       EHT98592.1 196 TKGKVLDIGCGAGVIAASLPAHSPKVRLWLCDVHAaAIEASKATLAANG--LEGEVF 250
                      5679*****************************9878999999999966..766665 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.6e-05     0.055      76     144 ..     220     285 ..     199     329 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
                 H--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHH.HHH CS
     UPF0020  76 elklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkal.ekL 144
                 +++l+  D  ++++++++  + + g+++++ +s+  + +++   g +d+i++npP+ e +++  +  ++L
  EHT98592.1 220 KVRLWLCDVHAAAIEASKATLAANGLEGEVFASN-VFSDVT---GRFDMIISNPPFHEGTQTSLDAaQTL 285
                 5568888999999****************99988.677777...78**********99887765442444 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.18      14      48 ..      52      90 ..      46     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
        VirJ 14 WrdlDkevaea....lqkqgvpvvGvdsLryfWsertPe 48
                W++l + ++++    l +q   v G+d+L yfW++ +Pe
  EHT98592.1 52 WQNLSRRLGDQarygLVAQADDVQGCDTLVYFWTKNKPE 90
                6666665555433337788889****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2838.55
//
Query:       EHT98593.1  [L=136]
Description: DNA polymerase III psi subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-41  141.5   0.1    1.7e-41  141.4   0.1    1.0  1  DNA_III_psi  DNA polymerase III psi subunit
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.042   13.6   0.0    1.2  1  G2F          G2F domain
        1.1    8.9   5.4       0.19   11.4   1.0    2.0  2  CSTF_C       Transcription termination and cleavage factor C-


Domain annotation for each model (and alignments):
>> DNA_III_psi  DNA polymerase III psi subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.1   2.9e-45   1.7e-41       2     126 .]       3     127 ..       2     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 2.9e-45
                  XHHHHHHHHCTXXEEEESXGGGTS--S-----TT--EEEE-SS---TTSHHHHHHHHHTT--GGGEEEE-CCGGGGS-TT-B-EEEEES--S--SSBS CS
  DNA_III_psi   2 nrrdllLqemgItqWqlrkpevlkgevaislpeeirllivaeeapaaaepLlqdvLrslelkaeqvlvltpeqlaklesdhkelvwllgveakenlkg 99 
                  +rrd+lLq+mgItq+qlr+p+vl+ge+a++l  +++l+ivae++p  +ep+l+dvL++l lk+ qv+ +tp+ql++l+++ ++  wllgve++++++g
   EHT98593.1   3 SRRDWLLQQMGITQYQLRRPRVLQGEIAVRLLPDTQLIIVAENPPGLQEPFLRDVLHTLGLKPTQVMTVTPDQLQMLPETLNCAGWLLGVESEQSFNG 100
                  89************************************************************************************************ PP

                  -EEEE--HHHHHH-HHHHHHHHHHHHH CS
  DNA_III_psi 100 kqlqspsLaeLkqdaqaKraLWqqicq 126
                    l+s s++eL ++ +a+raLWqq+c+
   EHT98593.1 101 VALSSASFNELLSSGAARRALWQQMCE 127
                  *************************96 PP

>> G2F  G2F domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.1e-06     0.042      47      84 ..      73     110 ..      58     113 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-06
                 CGGGTT-THHHHHHHHHT-EE-TT---HHHHHTTEEEE CS
         G2F  47 GssLqllvsiggvigWlfAkesgeakNGfsltgGefnr 84 
                   +Lq+l   ++  gWl+ +es+++ NG  l  ++fn+
  EHT98593.1  73 PDQLQMLPETLNCAGWLLGVESEQSFNGVALSSASFNE 110
                 5689********************************96 PP

>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.87   5.2e+03       8      11 ..       8      11 ..       5      19 .. 0.65
   2 ?   11.4   1.0   3.1e-05      0.19      11      25 ..      67      81 ..      66      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.87
      CSTF_C  8 LlqQ 11
                LlqQ
  EHT98593.1  8 LLQQ 11
                6666 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.1e-05
      CSTF_C 11 QVLqLseeqIaaLPp 25
                QV+  ++ q+++LP+
  EHT98593.1 67 QVMTVTPDQLQMLPE 81
                **************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1072.01
//
Query:       EHT98594.1  [L=146]
Description: acetylase for 30S ribosomal subunit protein S18 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-15   56.7   0.0      3e-15   56.5   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.2e-11   44.6   0.0    1.5e-11   44.4   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.6e-11   42.0   0.0    8.8e-11   41.6   0.0    1.1  1  FR47             FR47-like protein
      2e-10   40.9   0.0    2.4e-10   40.7   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.1e-05   25.2   0.0    1.3e-05   24.9   0.0    1.1  1  GNAT_acetyltran  GNAT acetyltransferase
    3.8e-05   23.4   0.0    6.1e-05   22.7   0.0    1.2  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    5.7e-05   23.3   0.0    7.3e-05   22.9   0.0    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
    0.00031   20.9   0.0    0.00037   20.6   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.026   14.6   0.0    1.5  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.015   15.4   0.0      0.024   14.7   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.089   12.2   0.0       0.15   11.5   0.0    1.3  1  Acetyltransf_15  Putative acetyl-transferase
       0.12   13.1   0.0       0.13   13.0   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
       0.12   11.8   0.0       0.14   11.6   0.0    1.3  1  GNAT_acetyltr_2  GNAT acetyltransferase 2


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.2e-18     3e-15      18     117 .]      23     120 ..       7     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.2e-18
                     HHHHHHHHHHHHSTTCEEEE...EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHH CS
  Acetyltransf_1  18 daseeefeesfsleaegllv...aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaai 109
                     +a+ ++ e + s + ++ ++      +g+ ++f+    + d    +a +  +aV+p+y+++G G+aLl++l+++++ + +  ++l+v+++n +ai
      EHT98594.1  23 HAFPWREETFIS-NQGERFLnlrLDVEGQMAAFAITQVVLD----EASLFNIAVDPAYQRRGFGRALLQHLIDQLLARDVMTLWLEVRASNAPAI 112
                     344444333333.4444444456666699999996666666....8**********************************999************ PP

                     HHHHHTTE CS
  Acetyltransf_1 110 rlYeklGF 117
                     +lYe+l F
      EHT98594.1 113 ALYEQLDF 120
                     ***99987 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.1e-14   1.5e-11      35     111 ..      44     125 ..      16     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.1e-14
  Acetyltransf_10  35 vaeeggkivGvi..el.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavge 111
                       ++++g+++ ++  ++  d+  +  ++Vdp+y+++G g+aLl+++++++  ++  +  l+v+as+  a+++Ye+l F +v++
       EHT98594.1  44 RLDVEGQMAAFAitQVvLDEASLFNIAVDPAYQRRGFGRALLQHLIDQLLARDVMTlWLEVRASNaPAIALYEQLDFNQVSR 125
                      45677888877765666788899999**********************888888889*********************9965 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   6.4e-14   8.8e-11      16      80 ..      58     123 ..      43     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 6.4e-14
                 EEE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  16 ilrkdggelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfeki 80 
                  + +d  +l+ + v+p  +rrG+g+ l + l+ ++ +    t+ l v+asN p+i+lye+l f++ 
  EHT98594.1  58 QVVLDEASLFNIAVDPAYQRRGFGRALLQHLIDQLLArDVMTLWLEVRASNAPAIALYEQLDFNQV 123
                 44567799************************99988355789999*****************976 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.8e-13   2.4e-10      19      75 ..      56     121 ..      28     122 .. 0.65

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.8e-13
                     EEEEES..TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7  19 alslld..aeitrlaVdpeyrgkGiGraLleaae.....kgiile.qlel....naekaikfYeklGFe 75 
                     + +++   a++ ++aVdp+y+++G GraLl++ +     +    + +l+l    ++ +ai++Ye+l F 
      EHT98594.1  56 ITQVVLdeASLFNIAVDPAYQRRGFGRALLQHLIdqllaRD---VmTLWLevraSNAPAIALYEQLDFN 121
                     3333335567788******************8332233322...12233333324449********995 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   9.7e-09   1.3e-05     165     238 ..      48     124 ..      43     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.7e-09
  GNAT_acetyltran 165 ngeivsgasSysvyekgieieidTkedyrrkgLAtivaaalileclkrglyPsW...DaaneaSvaLaekLGYefek 238
                      +g++ + a + +v +++   +i+ +++y+r+g+ +++ ++li++ l r+++  W    a n +++aL+e+L +++++
       EHT98594.1  48 EGQMAAFAITQVVLDEASLFNIAVDPAYQRRGFGRALLQHLIDQLLARDVMTLWlevRASNAPAIALYEQLDFNQVS 124
                      688999999999******************************************544466***********999875 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.4e-08   6.1e-05      88     140 ..      72     123 ..      66     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.4e-08
                     SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEE CS
  Acetyltransf_8  88 eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfeke 140
                     ++++ ++g+++all++l+++l+a+ +++   +E +++N+ ai+l+e++ f+++
      EHT98594.1  72 DPAYQRRGFGRALLQHLIDQLLAR-DVMTLWLEVRASNAPAIALYEQLDFNQV 123
                     688899****************98.8**********************99876 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   5.3e-08   7.3e-05      72     131 ..      39     100 ..      30     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.3e-08
  Acetyltransf_6  72 rlyvlrld..grpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrrf 131
                     r++ lrld  g+ +A+a++ +  d + ++ +++dp++ + + g+ ll++li+++ ++++ ++
      EHT98594.1  39 RFLNLRLDveGQMAAFAITQVVLDEASLFNIAVDPAYQRRGFGRALLQHLIDQLLARDVMTL 100
                     4555666444***********************************************98765 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.7e-07   0.00037      38     140 ..      29     126 ..       6     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
  Acetyltransf_4  38 e.kflealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhk 130
                     e +f+++   +++++ l ++ ++++++ a  + +     d++++  + + + + + +g gr+l+++l++ l +  + +l  e+ ++n+++i++++
      EHT98594.1  29 EeTFISNQ--GERFLNLRLDvEGQMAAFAITQVV-L---DEASLFNIAV-DPAYQRRGFGRALLQHLIDQLLARDVMTLWLEVRASNAPAIALYE 116
                     44888884..888888888888888887766643.3...5888888888.589****************************************** PP

  Acetyltransf_4 131 alGFelvgif 140
                     +l F+ v + 
      EHT98594.1 117 QLDFNQVSRR 126
                     **99988765 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.9e-05     0.026      74     126 ..      64     121 ..      49     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT-E CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGye 126
                     a +  +av+p +++rg+ ++Ll+++++++ ++++   +l        +i++Y++++++
      EHT98594.1  64 ASLFNIAVDPAYQRRGFGRALLQHLIDQLLARDVMTLWLEVrasnaPAIALYEQLDFN 121
                     567789***********************99988877776544332235777777776 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.8e-05     0.024      20      57 ..      59      96 ..      41      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-05
  Acetyltransf_CG 20 rkegvldfthTeVpeelrGkGiAkkLvkaalddareeg 57
                        ++  +  + V+++++++G++++L ++ +d+  +++
       EHT98594.1 59 VVLDEASLFNIAVDPAYQRRGFGRALLQHLIDQLLARD 96
                     444577888999********************988775 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.15      74     102 ..      65      93 ..      49     134 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  Acetyltransf_15  74 eiYtlyvsekyrgkGlakklLeeslkelk 102
                      +++++ v++ y+++G+ + lL++ +++l+
       EHT98594.1  65 SLFNIAVDPAYQRRGFGRALLQHLIDQLL 93 
                      799*********************99985 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.2e-05      0.13      84     138 .]      68     121 ..      22     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
  Acetyltransf_3  84 gymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      + ++p+++++G+++  ++ l++ + ++  + +l+ ++ ++N   i+++e l f+
      EHT98594.1  68 NIAVDPAYQRRGFGRALLQHLIDQLLARD-VMTLWLEVRASNAPAIALYEQLDFN 121
                     578899*******************8888.899******************9995 PP

>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.9e-05      0.14      99     123 ..      67      91 ..      33     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.9e-05
  GNAT_acetyltr_2  99 vRiAvhpelqkmGYGsralelleky 123
                        iAv+p++q++G+G + l++l++ 
       EHT98594.1  67 FNIAVDPAYQRRGFGRALLQHLIDQ 91 
                      579******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1218.46
//
Query:       EHT98595.1  [L=226]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-22   80.3   0.0    3.7e-22   79.3   0.0    1.5  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.1e-14   54.3   0.0    1.7e-14   53.6   0.0    1.3  1  Hydrolase_like  HAD-hyrolase-like
    1.8e-13   51.3   0.0      5e-13   49.8   0.0    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   6.2e-26   3.7e-22       1     178 []       8     197 ..       8     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 6.2e-26
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee...............kieellrkyneekkkkevkpydgv 84 
                 i+FD D+Tl      +++ +++l++ y++  +++++++ +   +    +++ + +    e                 + l + + + + +  + p++g+
  EHT98595.1   8 ILFDADDTLFHFD--SYAGLQRLFAGYDV-RFTDQDFADYQAVNKPLWVEYQNGQLSALElqtrrfagwgqklsvAPAILNDGFLSAMAE-ICLPLEGA 102
                 7899999998654..67899999988877.888888888877777667777666655444777888888886666666666667777777.9999**** PP

       HAD_2  85 kelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl.klkkeeviyvGDsp.tDieaakkagikviav 178
                  +l+  L + ++k+gi+T++ ++ +++ le++g+ +yF+  v+se+v+ +KPd++++  al +l +  +++v++vGD+p +Di ++ +agik+++v
  EHT98595.1 103 DSLMTLL-HGRVKMGIITNGFTALQQRRLERTGFLDYFSALVVSEEVGVPKPDARIFDYALAQLgNPPRDRVLMVGDTPeSDILGGMNAGIKTCWV 197
                 9999888.********************************************************4456789***********************98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   2.8e-18   1.7e-14       4      74 ..     152     219 ..     150     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 2.8e-18
                     TTSSHHHHHHHHHH---.GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like   4 KPepemydfalevlgsd.peevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74 
                     KP + ++d+al++lg + +++vlm+GD++++Di+g+ naG+k++ V  G     d    ++kp++ +++l e
      EHT98595.1 152 KPDARIFDYALAQLGNPpRDRVLMVGDTPESDILGGMNAGIKTCWVDHGTRPLPD----AIKPDWRVNTLSE 219
                     9*************7773778****************************966655....4688888888876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   8.3e-17     5e-13       2     210 .]       6     191 ..       5     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 8.3e-17
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHH.....HCHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltal.....dippdlgaaigsaqs 95 
                 ++++fD d TL +        ++++                      a  ++++  ++fa        a++kp w++ +       + + +   g    
  EHT98595.1   6 DCILFDADDTLFHFD--SYAGLQRL---------------------FAGYDVRFTDQDFAD-----YQAVNKPLWVEYQngqlsALELQTRRFAG---- 72 
                 7899********888..23334444.....................455555788889999.....88888888888883332222222333333.... PP

                 HCHHHHHH............TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHH CS
                 xxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  96 qgrtvall............qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkva 181
                                     ++ + a+ +i     + ++a  ++  L+ + ++++++t+++ + ++r +++ G  dyf+a + s++++v kp+ +++ +
  EHT98595.1  73 -------WgqklsvapailnDGFLSAMAEIC---LPLEGADSLMTLLHGR-VKMGIITNGFTALQQRRLERTGfLDYFSALVVSEEVGVPKPDARIFDY 160
                 .......245555555555455555555555...56************55.69********************************************** PP

                 HHHHHT.STGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxx.xxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 182 aireLq.gkpeevamVGDgvn.DaaalaaAg 210
                 a+ +L+  +  +v+mVGD++  D+ ++ +Ag
  EHT98595.1 161 ALAQLGnPPRDRVLMVGDTPEsDILGGMNAG 191
                 *****9455889************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1777.97
//
Query:       EHT98596.1  [L=222]
Description: Smp family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-66  223.1   0.2    1.8e-66  222.7   0.2    1.2  1  SMP_2            Bacterial virulence factor haemolysin
  ------ inclusion threshold ------
       0.02   15.2   2.4        2.6    8.3   0.3    2.4  2  TetR_C_16        Tetracyclin repressor-like, C-terminal domai
      0.097   11.8   1.7       0.12   11.5   0.1    1.7  2  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> SMP_2  Bacterial virulence factor haemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   0.2   3.1e-70   1.8e-66       1     159 []       1     160 [.       1     160 [. 0.99

  Alignments for each domain:
  == domain 1  score: 222.7 bits;  conditional E-value: 3.1e-70
       SMP_2   1 mvkeklkfrllltvivllclallvvllqgasqfslgsqlarvnQveeLsklLvrQvanslskllvdnak.eeklkelldqltkeslvlDAsvYskdGel 98 
                 m+k+ lkfrl++tvivl++lallvvl+qgas+fslg+q+ar++Q eeL+++L+rQva+sl +l++++++ +++++++++q+t++s++lDAsvY+ dG+l
  EHT98596.1   1 MAKTALKFRLHRTVIVLISLALLVVLMQGASWFSLGHQMARSEQAEELAQTLTRQVAFSLKPLMDNSEDnRSQIEAIISQMTDNSRILDASVYAGDGSL 99 
                 799***************************************************************999899*************************** PP

       SMP_2  99 lAqseealelrdrlaldgkkagssfnqQiVepieskdgliGFlRvtldtkvlqteakkvdn 159
                 +A+s+e++++rdrlaldgk+ags+fn+QiV+p+ +++g+ GFlR+tldt+vl te+++vdn
  EHT98596.1 100 VAHSGENINVRDRLALDGKRAGSYFNHQIVQPLSGSNGPAGFLRITLDTHVLVTESRQVDN 160
                 ***********************************************************97 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.002        12      31      72 ..      39      81 ..      28      82 .. 0.90
   2 ?    8.3   0.3   0.00044       2.6      36      84 ..     138     186 ..     125     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.002
                -------HHHHHHHHHHHHHHCTTTS-ST.THHHHHHHHHHHH CS
   TetR_C_16 31 lsseeaaellrefleeqvlaplaarlggp.daelRaalvasql 72
                ++ +e+ae l + l++qv+ +l+  ++++ d +  ++ ++sq+
  EHT98596.1 39 MARSEQAEELAQTLTRQVAFSLKPLMDNSeDNRSQIEAIISQM 81
                47789999*******************999999********98 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00044
                 --HHHHHHHHHHHHHHCTTTS-STTHHHHHHHHHHHHHHHHHHHHTS-- CS
   TetR_C_16  36 aaellrefleeqvlaplaarlggpdaelRaalvasqllGlalaRyvlrl 84 
                  a  lr  l ++vl + ++++++++  lR  +++++ +G++l R +lr 
  EHT98596.1 138 PAGFLRITLDTHVLVTESRQVDNTTNILRLMMLLALAIGIILSRTLLRD 186
                 5667888899999999999***************************997 PP

>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     2e-05      0.12      40     140 ..       4     103 ..       1     108 [. 0.86
   2 ?   -0.8   0.1      0.11   6.7e+02     284     302 ..     160     178 ..     141     183 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2e-05
  AI-2E_transport  40 kfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqnilnelpslleelenliqalkqslskilsnilssilnsl 133
                      ++L k+++ r+++vl+ l+ll+vl+ +   + +   +a ++q  +  ++++ ++  +l+ l+++ e + ++i+a+ ++++++ + ++ s++   
       EHT98596.1   4 TAL-KFRLHRTVIVLISLALLVVLMQGASWFSLGHQMARSEQAEELAQTLTRQVAFSLKPLMDNSEDNRSQIEAIISQMTDNSRILDASVYAGD 96 
                      567.89*******************99888888788888888888899999*************999975799*******99999999998777 PP

  AI-2E_transport 134 lsllasl 140
                       sl+a++
       EHT98596.1  97 GSLVAHS 103
                      7776665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
  AI-2E_transport 284 krlglhplvillsllaggk 302
                      +++++  l++ll+l +g+ 
       EHT98596.1 160 NTTNILRLMMLLALAIGII 178
                      4556666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1757.61
//
Query:       EHT98597.1  [L=325]
Description: 3-phosphoserine phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-22   78.2   0.0    6.7e-22   77.0   0.0    1.7  1  DUF5609          Domain of unknown function (DUF5609)
      2e-13   51.1   0.1    3.3e-13   50.5   0.1    1.4  1  HAD              haloacid dehalogenase-like hydrolase
    4.6e-13   49.9   1.0    8.7e-13   49.0   1.0    1.4  1  Hydrolase        haloacid dehalogenase-like hydrolase
    1.8e-11   44.3   0.1    3.3e-10   40.2   0.1    2.3  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    0.00029   20.5   0.0    0.00081   19.0   0.0    1.7  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
     0.0014   18.0   0.0      0.038   13.4   0.0    2.1  2  Put_Phosphatase  Putative Phosphatase
  ------ inclusion threshold ------
       0.05   13.7   0.0       0.57   10.3   0.0    2.0  2  HAD_2            Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> DUF5609  Domain of unknown function (DUF5609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   2.6e-25   6.7e-22       1      64 [.      37     100 ..      37     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 2.6e-25
     DUF5609   1 rkaswlvYgrsltkdkleqlqeklgealdivaaWkVgsYdVlllageltaqleqaveelklDva 64 
                 ++++wl+Ygr+l+k++l+++q +lg+a++iv+aW+V +Y+V++lag+lt  + ++++el lDva
  EHT98597.1  37 GRTGWLLYGRGLDKQRLTDYQHQLGAAMVIVSAWNVDDYQVIRLAGSLTPFASKLAHELALDVA 100
                 589************************************************************9 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.1   1.3e-16   3.3e-13       3     187 ..     116     281 ..     114     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.3e-16
         HAD   3 fDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahraaG 101
                  D+D T ++ + ++++++ l+++     ++ ++e ++ a+   +++ld  +  ++  a+l+g ++ + +++++ +     p l+  g+ +l ++ +  G
  EHT98597.1 116 MDMDSTAIQIECIDEIAK-LAGC-----GEQVAEVTERAM---RGELDFTASLRQRVATLKGADANILKQVRDEL-----P-LM-SGLTTLTKKLQVLG 198
                 566666666666666666.6666.....444444444444...56666666667777788888866666666666.....2.45.79999999999*** PP

         HAD 102 drvvvvSgglrplvepllaelgadevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 ++v++ Sgg+ +++e l ++l   ++ a+ele +d +ltge  + g++v  + k+  l++   a+  +i++e +va+GD+ +Dl + 
  EHT98597.1 199 WQVAIASGGFTYFAEFLRDKLHLAAIAANELEIRDgKLTGE--VLGPVVDAQYKAETLKK--LAKRFEIAPEQTVAIGDGANDLLMI 281
                 **********************99*****************..*****************..88888999999***********985 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   1.0   3.4e-16   8.7e-13       3     208 ..     113     283 ..     111     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 3.4e-16
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtva 101
                 ++v+D+d T ++ e     +i+++                     a+  + +++++++++     ++++g+ +++++l               + r + 
  EHT98597.1 113 LLVMDMDSTAIQIE-----CIDEI---------------------AKLAGCGEQVAEVTE-----RAMRGELDFTASL---------------RQRVAT 165
                 68999999999999.....99999.....................9999999999999**.....*************...............888888 PP

                 HHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES..........STTTSHHHHHHHHHHHTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 102 llqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet..........vakpspegkvaaireLqgk 189
                 l+ a+a  +  + d+l+++ ++  + ++L+  g++v++++g++  +ae + ++l  + + ++++++ + +           a  + e ++++++++ + 
  EHT98597.1 166 LKGADANILKQVRDELPLMSGLTTLTKKLQVLGWQVAIASGGFTYFAEFLRDKLHlAAIAANELEIRDGKltgevlgpvvDAQYKAETLKKLAKRFEIA 264
                 88666666677778888***************************99998888888733334444444444423321144444448888888888888** PP

                 GGGEEEEESSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 190 peevamVGDgvnDaaalaa 208
                 pe+++++GDg+nD+ +++a
  EHT98597.1 265 PEQTVAIGDGANDLLMIKA 283
                 ****************998 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.083   2.1e+02      24      59 ..     191     224 ..     185     233 .. 0.85
   2 !   40.2   0.1   1.3e-13   3.3e-10     188     251 ..     250     312 ..     245     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.083
                  HHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEE CS
  Hydrolase_3  24 ikklkekgikvviATGRslravlpvleelgldlpvi 59 
                   kkl+  g +v+iA+G  +++++ + ++l+l   +i
   EHT98597.1 191 TKKLQVLGWQVAIASGGFTYFAEFLRDKLHLA--AI 224
                  5899999*********9999999999999965..44 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 1.3e-13
                  HHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHH CS
  Hydrolase_3 188 KgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGV 251
                  K+++lkklak++ i +e+++a+GDg ND+ M++a+ lg+A   a+++v +  + ++ +++  GV
   EHT98597.1 250 KAETLKKLAKRFEIAPEQTVAIGDGANDLLMIKASALGIAY-HAKPKVNEQTTVTIRHADLMGV 312
                  9***************************************7.5999999999999999887777 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.87   2.2e+03       3      14 ..     112     123 ..     110     139 .. 0.79
   2 !   19.0   0.0   3.1e-07   0.00081     166     205 ..     250     289 ..     238     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.87
                 EEEEE-TBTTTB CS
        S6PP   3 lllvsdLDntlv 14 
                  llv d+D+t +
  EHT98597.1 112 GLLVMDMDSTAI 123
                 699*******98 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 3.1e-07
                 HHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE CS
        S6PP 166 kgeAlryLakkleleleqilvcGdsgnDeellignvlgVv 205
                 k+e+l+ Lak++e+ +eq++  Gd  nD  ++++++lg+ 
  EHT98597.1 250 KAETLKKLAKRFEIAPEQTVAIGDGANDLLMIKASALGIA 289
                 999**********************************996 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.5e-05     0.038       2     106 ..     113     215 ..     112     227 .. 0.79
   2 ?    2.5   0.0     0.032        81     164     183 ..     260     279 ..     248     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
  Put_Phosphatase   2 lvvfDFDktiidedsdnwvvdelpatelfeelretlrkgl..wnelmdrvlkelheqgvseadikkvlrsiplspglvelikslakkkleldli 93 
                      l+v+D D t i+ +  + + ++++  e+ +e+ e   +g   ++  + + +++l+  g   + +k+v  ++pl +gl+ l k+l  + l++++ 
       EHT98597.1 113 LLVMDMDSTAIQIECIDEIAKLAGCGEQVAEVTERAMRGEldFTASLRQRVATLK--GADANILKQVRDELPLMSGLTTLTKKL--QVLGWQVA 202
                      79***********************999999988766443124444444445554..456667899999***************..7899**** PP

  Put_Phosphatase  94 iiSDaNsffieei 106
                      i S   ++f e +
       EHT98597.1 203 IASGGFTYFAEFL 215
                      *999999888765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.032
  Put_Phosphatase 164 regveyerliYvGDganDlC 183
                      r +++ e+ + +GDganDl 
       EHT98597.1 260 RFEIAPEQTVAIGDGANDLL 279
                      45778999**********85 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.14   3.5e+02      70     104 ..     174     207 ..     118     221 .. 0.68
   2 ?   10.3   0.0   0.00022      0.57     138     170 ..     251     283 ..     243     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.14
       HAD_2  70 neekkkkevkpydgvkelLeeLkeagyklgivTsk 104
                  ++   +e+ +++g+  l ++L+  g +++i++ +
  EHT98597.1 174 LKQVR-DELPLMSGLTTLTKKLQVLGWQVAIASGG 207
                 33334.5899999******************9976 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
       HAD_2 138 peviekaleklklkkeeviyvGDsptDieaakk 170
                 +e+++k+ +++++ +e+++ +GD  +D+   k+
  EHT98597.1 251 AETLKKLAKRFEIAPEQTVAIGDGANDLLMIKA 283
                 78999**********************765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2529.82
//
Query:       EHT98598.1  [L=460]
Description: putative repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-16   59.4   0.1    1.3e-09   37.8   0.0    2.1  2  ATPase           KaiC
    3.5e-14   52.8   0.1    9.3e-14   51.4   0.1    1.7  1  AAA_25           AAA domain
    1.5e-12   47.0   6.0    2.5e-12   46.3   6.0    1.4  1  Rubredoxin_2     Rubredoxin metal binding domain
    6.2e-10   39.0   0.1    1.5e-09   37.7   0.0    1.7  1  ChlI             Subunit ChlI of Mg-chelatase
    2.4e-07   30.3   0.5    0.00034   20.0   0.0    2.3  2  DnaB_C           DnaB-like helicase C terminal domain
    5.4e-07   29.4   0.1    1.1e-06   28.3   0.1    1.5  1  Lon_C            Lon protease (S16) C-terminal proteolytic do
    2.3e-05   23.8   0.3      0.001   18.4   0.3    2.2  1  Rad51            Rad51
    0.00068   19.2   0.1     0.0011   18.5   0.1    1.3  1  RecA             recA bacterial DNA recombination protein
    0.00088   19.7   0.0     0.0017   18.8   0.0    1.5  1  AAA              ATPase family associated with various cellul
    0.00095   18.5   0.4     0.0058   15.9   0.0    1.9  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0013   19.1   0.2     0.0065   16.9   0.1    1.9  2  AAA_16           AAA ATPase domain
     0.0018   18.6   0.0     0.0036   17.6   0.0    1.5  1  AAA_22           AAA domain
     0.0028   16.4   0.0       0.21   10.2   0.0    2.3  2  GvpD             GvpD gas vesicle protein
     0.0028   18.2   0.0     0.0055   17.2   0.0    1.4  1  ABC_tran         ABC transporter
     0.0036   17.0   0.0     0.0065   16.2   0.0    1.4  1  AAA_24           AAA domain
      0.005   16.8   0.4      0.051   13.5   0.0    2.3  2  NTPase_1         NTPase
     0.0055   16.7   0.0       0.01   15.9   0.0    1.4  1  AAA_14           AAA domain
     0.0091   15.7   0.5      0.032   13.9   0.1    2.1  1  AAA_30           AAA domain
  ------ inclusion threshold ------
       0.01   14.9   0.1       0.04   13.0   0.0    2.0  2  T2SSE            Type II/IV secretion system protein
      0.016   14.5   0.1       0.03   13.6   0.1    1.4  1  Zeta_toxin       Zeta toxin
       0.03   14.3   0.0      0.065   13.2   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
      0.036   13.7   0.0      0.062   12.9   0.0    1.5  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.045   13.7   0.2       0.17   11.8   0.2    2.0  1  NACHT            NACHT domain
      0.087   12.6   0.3        0.2   11.4   0.3    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.098   12.7   0.0       0.18   11.9   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
       0.19   11.5   0.0       0.27   10.9   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.9e-12   1.3e-09       3      76 ..      79     150 ..      77     162 .. 0.92
   2 !   20.1   0.0   4.9e-07   0.00033     109     207 ..     160     261 ..     147     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.9e-12
      ATPase   3 tgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdlek 76 
                 t  +++D++l gG+  g+++li G+pG+GK+++ lq + + ae+   ++++vt ee+ +++  +a++lG   ++
  EHT98598.1  79 TSFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAES--MKTLYVTGEESLQQVAMRAHRLGLPSDN 150
                 77899************************************999..9*********************986555 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 4.9e-07
      ATPase 109 eelaeaikeikakrvviDsitgl.ayee.....keavaReilrqlvrvlkklgvTailvsekssseeaaggygveefivdgvivLdlkeieeelvRtle 201
                 e++  + ++ + + +viDsi+++ + +      + a++Re+   l+r+ k +gv  i+v  +++ +++  g++v e+ +d+ + Ld    ++++ Rtl+
  EHT98598.1 160 EQICLIAEQEQPQIMVIDSIQVMhMADIqsspgSVAQVRETAAYLTRFAKTRGVAIIMVGHVTK-DGSLAGPKVLEHCIDCSVLLDG--DADSRFRTLR 255
                 55666677778899*******99643321111145789*****************999999765.588899999888********94..4567888888 PP

      ATPase 202 ivkmRg 207
                   k R 
  EHT98598.1 256 SHKNRF 261
                 888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   1.3e-16   9.3e-14      25     193 ..      88     225 ..      67     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.3e-16
      AAA_25  25 lvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrgg 123
                 l +g++  g+ +l+ G pg+GK+tl+l++++ +a+            +k+lyv +E+s ++++ R++++g      ++l  l+                
  EHT98598.1  88 LGGGVV-PGSAILIGGNPGAGKSTLLLQVMCRLAE-----------SMKTLYVTGEESLQQVAMRAHRLGLPS---DNLNMLS---------------- 155
                 445676.5**************************5...........579******************999886...8999998................ PP

      AAA_25 124 tlltadvdaleaaieevegvrlvviDplsralggdensnsd....vgalvealeriarrtgaavllvhHvgKes 193
                    +  ++++   +e+ e+++  viD+++ ++ +d +s+      v++  + l r+a+  g+a+++v Hv K++
  EHT98598.1 156 ---ETSIEQICLIAEQ-EQPQIMVIDSIQVMHMADIQSSPGsvaqVRETAAYLTRFAKTRGVAIIMVGHVTKDG 225
                 ...3679999999999.9****************888886655557999***********************97 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   6.0   3.6e-15   2.5e-12       1      28 []       9      36 ..       9      36 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.6e-15
  Rubredoxin_2  1 YvCsqCGfesakwfGrCpsCgsWntlke 28
                  +vC++CG+++++w+G+C +C++Wnt++e
    EHT98598.1  9 FVCNECGADYPRWQGQCSACHAWNTITE 36
                  8*************************97 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.2e-12   1.5e-09      35     121 .]     348     433 ..     313     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.2e-12
        ChlI  35 nsgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121
                 + g ++ ++ + vn+    +k + ++ DL++ ++++++l + +  ++++++Ge++l G++rpv    + +++a+k+g+k++ivp+ n
  EHT98598.1 348 HGGLQMADQDVFVNVVGG-VKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEVGLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGN 433
                 389999*********988.9999*************************************************************987 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.9e-07   0.00034       3      67 ..      78     141 ..      77     145 .. 0.88
   2 !    8.0   0.2    0.0024       1.6     124     176 ..     165     219 ..     149     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.9e-07
                 XSSTHHHHHHCT.SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   3 stgfkdLDklts.GlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRl 67 
                 st fk++D++++ G+ +g  i+i++ p+ Gk++l l+++ + a+  +++ +++  e s +q+++R 
  EHT98598.1  78 STSFKEFDRVLGgGVVPGSAILIGGNPGAGKSTLLLQVMCRLAE--SMKTLYVTGEESLQQVAMRA 141
                 689*****98862799***********************99996..56789999999999999985 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0024
                 HHHHTTEEEEEEEEGGGTBTS.CS.SSCCCHHHHHHHHHHHHHHHHCTSXEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 124 lkkekglgliviDyLqlmegs.ee.kenreqevseisrsLkalakelnvpvials 176
                 ++++++ +++viD +q+m+ +  + +   + +v e +  L  +ak   v +i++ 
  EHT98598.1 165 IAEQEQPQIMVIDSIQVMHMAdIQsSPGSVAQVRETAAYLTRFAKTRGVAIIMVG 219
                 45668899***********7643324588999*****************999875 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   1.6e-09   1.1e-06      94     174 ..     356     435 ..     348     456 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.6e-09
                 -EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGG CS
       Lon_C  94 kdihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenek 174
                 +d+ + v    v     sa ++l+ ++vs l++++  +d+ + Ge+ L G++ p+   +e++  a + g k+ i+P  n+ 
  EHT98598.1 356 QDVFVNVVG-GVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEVGLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAP 435
                 566666654.45555679**********************************************************99863 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   1.5e-06     0.001      16     189 ..      74     224 ..      55     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
                 S-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE--ST CS
       Rad51  16 llqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRayti 114
                 l + +t  k++D++LgGG+  gs   i G+ ++Gk+ l   l v++ l  ++     k++y+  e +++   +   a+r +l ++++ +  +       
  EHT98598.1  74 LPRFSTSFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLL--LQVMCRLAESM-----KTLYVTGEESLQQ--VAMRAHRLGLPSDNL-NMLS------- 155
                 5568999*****************************986..679****9776.....7899999999865..555688888876653.2211....... PP

                 THHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH---.----THHHHHHHHHHHHHHHHHHHHH--EEEEEEE---- CS
       Rad51 115 ehqeellqqaaallaedkfallivDsvtalyRtdfs.grgelakRqqklgkllrtLrkladefevavvitnqvvaq 189
                    e  ++q++    +++ +++++Ds+  ++ +d +   g +a    ++ +++  L+++a+  +va+++  +v+++
  EHT98598.1 156 ---ETSIEQICLIAEQEQPQIMVIDSIQVMHMADIQsSPGSVA----QVRETAAYLTRFAKTRGVAIIMVGHVTKD 224
                 ...2234555555667788888899998888888651456665....46677788888888888888888888766 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.6e-06    0.0011      17     142 ..      61     181 ..      48     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.6e-06
                 TSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HH..HHHHTT--GGG-EEE-- CS
        RecA  17 gsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpk..yakklGvdidellvsqp 113
                 + + kl + +  + +  +s+    +d  lG GG+  G  i i G   +Gk+tl l+++++  ++ + + ++  e +l+ +   a++lG+  d+l +   
  EHT98598.1  61 SRVQKLSEIS-LEALPRFSTSFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQVMCRLAESMK-TLYVTGEESLQQVamRAHRLGLPSDNLNMLSE 156
                 5556664444.45667788888899*****.7787899999******************9987665.679999999986522799*********88765 PP

                 SSHHHHHHHHHHHHTTT--SEEEEE-TTT CS
        RecA 114 dtGeqaleiadalvrsgaidlivvdsvaa 142
                  + eq   ia    +    +++v+ds+  
  EHT98598.1 157 TSIEQICLIA----EQEQPQIMVIDSIQV 181
                 5556555555....456667778887754 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-06    0.0017       1      82 [.      98     197 ..      98     230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-06
                 EEEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS..............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCH CS
         AAA   1 vllyGppGtGKTllakavakel..gvefleisgsellsk..............yvgesekkirelfkeakekakpsilfiDEidalaksr...sgsese 80 
                 +l+ G+pG GK++l  +v+  l  +++ l + g e l++              +   se +i+++   a++++ p i++iD i  ++ ++   s ++  
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLaeSMKTLYVTGEESLQQvamrahrlglpsdnLNMLSETSIEQICLIAEQEQ-PQIMVIDSIQVMHMADiqsSPGSVA 195
                 5788**************9998555778888888888668888888888889988899999999999999998.************9999653222333 PP

                 HH CS
         AAA  81 ee 82 
                 + 
  EHT98598.1 196 QV 197
                 33 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.5e-06    0.0058       3      47 ..      97     138 ..      95     146 .. 0.87
   2 ?    0.8   0.1      0.34   2.3e+02      97     144 ..     141     190 ..     140     210 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.5e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvl 47 
                  +l+ G++G+GK+ +ll+++ +l   +e  ++ y+++ ++l++v 
  EHT98598.1  97 AILIGGNPGAGKSTLLLQVMCRL---AESMKTLYVTGEESLQQVA 138
                 689********************...8888889999998888876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
     DUF2075  97 Ahrlltksdqaekqse..enqlkelmkrakvvvalvDegQelntgeigte 144
                 Ahrl   sd+ +  se   +q+  + ++++  ++++D  Q++++ +i++ 
  EHT98598.1 141 AHRLGLPSDNLNMLSEtsIEQICLIAEQEQPQIMVIDSIQVMHMADIQSS 190
                 56666655554444442145555566667799999999999999998765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   9.4e-06    0.0065      17      62 ..      85     134 ..      81     171 .. 0.69
   2 ?   -1.0   0.0       2.9     2e+03     126     146 ..     161     181 ..     145     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.4e-06
      AAA_16  17 ervrsgrp...elvllsGesGvGKsslvrellralekdg.giflrgkcdq 62 
                 +rv  g+    +++l+ G++G GKs+l+ +++ +l ++   ++++g+   
  EHT98598.1  85 DRVLGGGVvpgSAILIGGNPGAGKSTLLLQVMCRLAESMkTLYVTGEESL 134
                 5566565566799***************9999999999324444444333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.9
      AAA_16 126 llallsrderplvlvlDdlqw 146
                  + l++++e+p ++v+D +q 
  EHT98598.1 161 QICLIAEQEQPQIMVIDSIQV 181
                 454555669999999999993 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.2e-06    0.0036       6     130 ..      96     220 ..      93     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.2e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 + +++ G +G+GK+tll +++ +l           +  + ++++++s++++  + ++ lgl+ ++ +  se  +e++   +++ +  ++++iD +q + 
  EHT98598.1  96 SAILIGGNPGAGKSTLLLQVMCRL---------AESMKTLYVTGEESLQQV-AMRAHRLGLPSDNLNMLSETSIEQICLIAEQEQP-QIMVIDSIQVMH 183
                 678999******************.........555556666677766666.4445666766666333555555777777777777.*********997 PP

      AAA_22 105 .....s........eealeeLrsllnlsrkgvqliLvGt 130
                      s         e   +L ++++  + gv++i+vG+
  EHT98598.1 184 madiqSspgsvaqvRETAAYLTRFAK--TRGVAIIMVGH 220
                 77765166677666666666666666..*******9995 PP

>> GvpD  GvpD gas vesicle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00031      0.21       9      45 ..      94     130 ..      84     142 .. 0.90
   2 ?    3.7   0.0     0.028        19      95     185 ..     159     256 ..     142     265 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00031
        GvpD   9 aGktllikGaPGtGktlftlrgldvlrresdvlyvst 45 
                 +G ++li G+PG+Gk ++ l+ +  l +  + lyv+ 
  EHT98598.1  94 PGSAILIGGNPGAGKSTLLLQVMCRLAESMKTLYVTG 130
                 6999******************************975 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.028
        GvpD  95 lefvdeiaaiatkliialdswelvyeylaerydsPediktvknd...lvvlaresgvrlvlvletaa......nsrleyivdGvvtlnvkeddrgrlrr 184
                 +e +  ia+  +  i+ +ds  + +  +a    sP ++  v++    l  +a+  gv +++v    +      ++ le+ +d  v l+   d r r+ r
  EHT98598.1 159 IEQICLIAEQEQPQIMVIDS--IQVMHMADIQSSPGSVAQVRETaayLTRFAKTRGVAIIMVGHVTKdgslagPKVLEHCIDCSVLLDGDADSRFRTLR 255
                 333444555555568999**..55567999999**998888876122556678889999988765441111115679**********999999999988 PP

        GvpD 185 d 185
                 +
  EHT98598.1 256 S 256
                 7 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     8e-06    0.0055       8      80 ..      92     167 ..      88     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8e-06
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren....e 80 
                 + +g+ + i G+ GaGKStLl  ++  l   + ++ + g+++ + +     +++g  + + ++ +e+++++     e
  EHT98598.1  92 VVPGSAILIGGNPGAGKSTLLLQVMCRLAESMKTLYVTGEESLQ-QVAMRAHRLGLPSDNLNMLSETSIEQIcliaE 167
                 668999*************8765555555678888888777777.45555666666666667777666665566542 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.4e-06    0.0065       5      77 ..      98     182 ..      95     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.4e-06
      AAA_24   5 iliyGpsgiGKTtlakel......gpkplfidtekGlksldadkfpdie....swedfldevvel...aaeladyktlviDtidel 77 
                 ili G +g+GK+tl+++         k+l++  e++l+++  +    +     +++++ ++  e     ae+++ ++ viD+i+ +
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVmcrlaeSMKTLYVTGEESLQQVAMRAHR-LGlpsdNLNMLSETSIEQiclIAEQEQPQIMVIDSIQVM 182
                 8999******************9999*********99987765532.2244576666666666658888888889*******9876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.4e-05     0.051       2      26 ..      98     122 ..      97     136 .. 0.88
   2 ?    0.9   0.2      0.55   3.8e+02      67     107 ..     140     182 ..     123     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.4e-05
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 ++i G+pG GK+Tl+ +v++ l++s
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLAES 122
                 799*****************99876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.55
                 -SSEETTEEE-HHHHHHHHHHHHHHHH..HHH-EEEE---STT CS
    NTPase_1  67 reprvgkyvvdvesfeelalealrkal..seadviviDEiGkm 107
                 r  r+g    +++ ++e  +e++      ++++++viD i  m
  EHT98598.1 140 RAHRLGLPSDNLNMLSETSIEQICLIAeqEQPQIMVIDSIQVM 182
                 555555555555555555555554332237888*****98666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-05      0.01       4      77 ..      97     183 ..      95     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe.....kllelilek.lke.......ekktylflDEiqevp 77 
                 +++i G   +GK+tll q++ +l  ++ ++ly++ ++  +            +     ++l+++ e  +++       e+ +++++D iq + 
  EHT98598.1  97 AILIGGNPGAGKSTLLLQVMCRLA-ESMKTLYVTGEESLQqvamraH-----RlglpsDNLNMLSETsIEQicliaeqEQPQIMVIDSIQVMH 183
                 678889999***********8887.999******9997774444331.....1333336666666654444666777789999*******883 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   4.7e-05     0.032      21     126 ..      98     222 ..      93     243 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.7e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.eelgieastiakllkrlk.......grarlepgtllivDEagmv........... 100
                  ++ G +G+GK+t+l ++   ++++ +++ +   ++ +  +++ + lg+++++++ l ++         +    e+ +++++D + ++           
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLAESMKTLYVTGEESLQQVAMRaHRLGLPSDNLNMLSETSIeqicliaE---QEQPQIMVIDSIQVMhmadiqsspgs 193
                 56889*********999977666666667766666666666663589********988555489986542...45669999999887766666666665 PP

      AAA_30 101 ...dtkqlaallkaaekagakvilvGDer 126
                      +++a l++ a+++g+ +i+vG   
  EHT98598.1 194 vaqVRETAAYLTRFAKTRGVAIIMVGHVT 222
                 54333445556666777778888888665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.8e-05      0.04      94     161 ..      60     128 ..      32     162 .. 0.82
   2 ?   -1.8   0.0       1.8   1.2e+03     180     208 ..     369     400 ..     360     401 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
       T2SSE  94 viRkksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks.deriv 161
                 + R ++ +e++l+ l    +  +++++vl   v     il+ G  g GK+tll  ++  +++s +   v
  EHT98598.1  60 TSRVQKLSEISLEALPRFSTSFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAESmKTLYV 128
                 4578899999999999999999*******************************8888888777333344 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
       T2SSE 180 nakkakvtfadllraaLRlrP...DrimvGEi 208
                  + +a++ +   + ++LR rP   D ++ GE+
  EHT98598.1 369 TETSADLALMLSMVSSLRDRPlpqDLVIFGEV 400
                 4445666666677799****999999**9998 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.4e-05      0.03      18      40 ..      97     119 ..      95     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
  Zeta_toxin  18 lillgGqpGAGKselaellkdel 40 
                 +il+gG pGAGKs+l+  +  +l
  EHT98598.1  97 AILIGGNPGAGKSTLLLQVMCRL 119
                 89*************98776555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.4e-05     0.065       2      84 ..      98     190 ..      97     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.4e-05
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--................--------G-SEEEEESGGG--.HHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik.......ngttslvdsplvraaregeilvlDEverae.sevlns 84 
                 +l+ G+pG gKs+l  ++  +l    +++yv + +++++  ++ +r           ++ts ++ +l  + ++++i+v+D ++ ++  ++++s
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLaeSMKTLYVTGEESLQQVAMRAHRLGLpsdnlnmLSETSIEQICLIAEQEQPQIMVIDSIQVMHmADIQSS 190
                 57789********99998888879999999999999999998888874477878788999999999999999********9998887777765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-05     0.062       2      35 ..      97     131 ..      96     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
                 EEEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS CS
        cobW   2 vtvltGflGsGKTtLlnhll.enraglklavivNe 35 
                 +++++G +G+GK+tLl +++ + ++++k+  +++e
  EHT98598.1  97 AILIGGNPGAGKSTLLLQVMcRLAESMKTLYVTGE 131
                 5789************9998788888777777666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00025      0.17       3      28 ..      98     123 ..      96     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                 EEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegk 28 
                 +++ G +G GK+tLl +++  +ae+ 
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLAESM 123
                 7899***************9999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3    0.0003       0.2      24      39 ..      97     112 ..      88     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
      AAA_29  24 atlltGpsGsGKSTll 39 
                 a+l+ G+ G+GKSTll
  EHT98598.1  97 AILIGGNPGAGKSTLL 112
                 78999**********8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00026      0.18       2      42 ..      98     138 ..      97     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk 42 
                 ++i G+p +GKStL+ + + + a+  ++  +T +    +v+
  EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLAESMKTLYVTGEESLQQVA 138
                 6789************9999999999999999887777776 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00039      0.27       1      23 [.      98     128 ..      98     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00039
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrts........l 23 
                      i++ G pG+GKStl+ ++++          +
       EHT98598.1  98 ILIGGNPGAGKSTLLLQVMCRLaesmktlyV 128
                      578899***********99885555554322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3360.79
//
Query:       EHT98599.1  [L=412]
Description: NadR transcriptional repressor / ribosylnicotinamide kinase / NMN adenylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-27   95.4   0.0    6.1e-27   94.9   0.0    1.3  1  AAA_28           AAA domain
    6.4e-09   35.7   0.1    2.4e-08   33.9   0.0    1.9  2  HTH_3            Helix-turn-helix
      3e-07   30.7   0.0    6.2e-07   29.7   0.0    1.5  1  HTH_31           Helix-turn-helix domain
    5.5e-05   23.1   0.0    0.00049   20.1   0.0    2.4  2  HTH_19           Helix-turn-helix domain
    0.00043   20.5   0.1      0.004   17.4   0.0    2.4  2  CTP_transf_like  Cytidylyltransferase-like
     0.0037   17.0   0.0      0.011   15.4   0.0    1.9  2  Citrate_ly_lig   Citrate lyase ligase C-terminal domain
  ------ inclusion threshold ------
      0.018   15.5   0.0      0.032   14.7   0.0    1.4  1  HTH_26           Cro/C1-type HTH DNA-binding domain
       0.08   12.9   0.2       0.18   11.8   0.1    1.7  2  HTH_37           Helix-turn-helix domain
      0.082   12.6   0.0       0.19   11.5   0.0    1.6  1  DUF4219          Domain of unknown function (DUF4219)


Domain annotation for each model (and alignments):
>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   3.1e-30   6.1e-27       2     163 .]     234     394 ..     233     394 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 3.1e-30
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwv.edllafaervleeqleeeaaaaankvlfcDrglldtlaYarayggeaea 98 
                 ++i+Gges+GK+ l+++La+  +++  +E++r++++++l  +e al+++ +d++a+ +    +q+ + a   ankv f+D+++++t a+++ y+g+ ++
  EHT98599.1 234 VAILGGESSGKSMLVNKLANIfNTSSAWEYGRDYVFSHLGGDEMALQYSdYDKIALGH----AQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHP 328
                 89******************98**************************8666666655....6888999999************************777 PP

      AAA_28  99 eleaaarekrydlvfllppapeidddgeRr.edleereaiderlrealrelgipviivpsgdveeR 163
                  ++a + e r dlv+ll+++ +++ dg R   +  +r++++ +l+++l e +i+++ v+  d+++R
  EHT98599.1 329 FVQAMIDEYRFDLVILLENNVPWVADGLRSlGSSVDRREFQSMLIAMLGENNIDFVHVQEEDYDAR 394
                 788899*************99888*****856999************************9999987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.2e-11   2.4e-08       1      51 [.       7      58 ..       7      60 .. 0.93
   2 ?   -1.7   0.0       1.5     3e+03      43      54 ..     250     261 ..     247     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.2e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSE CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvs 51
                lk +  q+g +++++A+++G+++ ++s++ n  + +Ps ++l++l ++Lg++
  EHT98599.1  7 LKTAIRQQGHTLQQVADASGMTKGYLSQLLNAkIKSPSAQKLEALHRFLGLE 58
                5777789**************************999**************86 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
                 HHHHHHTSEHHH CS
       HTH_3  43 klakaLgvslde 54 
                 kla+ +++s ++
  EHT98599.1 250 KLANIFNTSSAW 261
                 9******99876 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.1e-10   6.2e-07       7      57 ..       8      58 ..       5      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.1e-10
      HTH_31  7 ralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +++ +++G ++++vA+++g+++ +ls+l ++++  ps + leal r lgl+
  EHT98599.1  8 KTAIRQQGHTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLE 58
                5555789******************************************95 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00049       3      54 ..       6      57 ..       5      61 .. 0.95
   2 ?   -0.2   0.0      0.52     1e+03      42      55 ..     245     258 ..     235     287 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgi 54
                 Lk a+++ g t++++a+  g++++++s++ n k++ psa +l ++ ++lg+
  EHT98599.1  6 YLKTAIRQQGHTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGL 57
                6999******************************************999997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.52
      HTH_19  42 aelllkiaealgid 55 
                 ++l++k+a++++ +
  EHT98599.1 245 SMLVNKLANIFNTS 258
                 56779999999876 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     2e-06     0.004       2      39 ..      69     105 ..      68     213 .. 0.90
   2 ?    0.6   0.0       0.3     6e+02       6      29 ..     284     305 ..     282     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCS CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppk 39 
                      + G F p+H GH+ l+++a ++++e l +++ +dep +
       EHT98599.1  69 IFGKFYPLHTGHIYLIQRACSQVDE-LHIIMGYDEPRD 105
                      5799*********************.**9999999876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.3
                      -TT--HHHHHHHHHHHHHSSESEE CS
  CTP_transf_like   6 FDpiHlGHlrlleqakklleedli 29 
                      +D i lGH+++++ a k+ ++  +
       EHT98599.1 284 YDKIALGHAQYIDFAVKYANK--V 305
                      789999*********999988..3 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.1   8.2e+03     103     116 ..      45      58 ..      36      59 .. 0.81
   2 !   15.4   0.0   5.7e-06     0.011       9      51 ..      74     116 ..      66     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
  Citrate_ly_lig 103 akalgitkryvGee 116
                     a++l+  +r++G e
      EHT98599.1  45 AQKLEALHRFLGLE 58 
                     78999999999977 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.7e-06
  Citrate_ly_lig   9 nPftlGhryLvekaakendvvhlfvvkedkslfsyeerlklvk 51 
                      P   Gh yL+++a+++ d +h+ +  ++   +s  e  ++ +
      EHT98599.1  74 YPLHTGHIYLIQRACSQVDELHIIMGYDEPRDLSLFENSAMSQ 116
                     58999******************99888877777666666655 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.6e-05     0.032       2      52 ..       7      57 ..       6      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgc 52
                L+ ++++ g t +++a ++g++++ ls l++ k++++s++ L+++ + Lg 
  EHT98599.1  7 LKTAIRQQGHTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGL 57
                6778889999***********************************999986 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.2e-05      0.18      23      64 ..       7      48 ..       1      58 [. 0.88
   2 ?   -3.3   0.0       4.7   9.4e+03      44      60 ..     116     132 ..     114     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-05
                HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHH CS
      HTH_37 23 iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkL 64
                ++  i++++ + +++a + g+++  +s+ll++k+++ s +kL
  EHT98599.1  7 LKTAIRQQGHTLQQVADASGMTKGYLSQLLNAKIKSPSAQKL 48
                7889******************************99998888 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.7
                 -HHHHHHHHTT--TT-- CS
      HTH_37  44 aqPkvsrllrgklsrfs 60 
                 +qP vs+ lr  l++f 
  EHT98599.1 116 QQPTVSDRLRWLLQTFK 132
                 79999998887777775 PP

>> DUF4219  Domain of unknown function (DUF4219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.4e-05      0.19       6      22 ..     154     170 ..     153     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.4e-05
     DUF4219   6 YatWklrMklyLiaqdL 22 
                 +++W++ +k +L++q++
  EHT98599.1 154 WDVWSAGVKIFLEEQGI 170
                 89*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3184.20
//
Query:       EHT98600.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-46  155.8   0.0      6e-45  152.2   0.0    2.2  2  DDE_Tnp_1_5  Transposase DDE domain
    7.1e-25   87.9   0.9    8.9e-25   87.6   0.9    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   6.7e-49     6e-45       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?    1.2   0.0     0.049   4.4e+02      39      67 ..     260     290 ..     232     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 6.7e-49
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld+eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+gl+l++pdys +s+rak+++v++++ ++ + +
   EHT98600.1  19 INRGSITFWLDDEAIQAWYESPTPPSRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGLPLRCPDYSSVSKRAKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHT98600.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.049
  DDE_Tnp_1_5  39 qtcltvkvlfk..lplRqlqGfvqsllklag 67 
                  + +  +k+lf+  l+lR   G v+  l+++ 
   EHT98600.1 260 TAMYRIKQLFGgsLTLRDYDGQVAEALAMVR 290
                  34567999*9545999****99988887775 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.9   9.9e-29   8.9e-25       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 9.9e-29
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHT98600.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r++++ +
  EHT98600.1 214 IPPRKGAGYWPV--EYAERNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDGQV 282
                 **********55..44445666666666666666666666...........................****************.555************ PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHT98600.1 283 AEALAMVRALN 293
                 ***99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2461.06
//
Query:       EHT98601.1  [L=305]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-08   32.8   0.0      1e-07   31.9   0.0    1.4  1  Trans_reg_C  Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.7e-12     1e-07       4      77 .]      26     100 ..      23     100 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.7e-12
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++l +    + elL++++g++v +e  +++ w++   +v+++++ + is +Rk L + +  +++I+t++++G++l
   EHT98601.1  26 LKLHSSVSYCFELLIARQGEIVDHEAFYQYAWRRFGmEVSANALYQSISLIRKALLACNIRQDVIRTIPRRGFML 100
                  66777778899**********************8889********************99999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2234.89
//
Query:       EHT98602.1  [L=149]
Description: hypothetical protein CKS_5000 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.0   0.2        1.9    8.5   0.0    2.2  2  Vps55     Vacuolar protein sorting 55


Domain annotation for each model (and alignments):
>> Vps55  Vacuolar protein sorting 55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2    0.0031        55      64      90 ..       4      30 ..       2      45 .. 0.86
   2 ?    8.5   0.0    0.0001       1.9      54      89 ..     100     135 ..      59     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0031
       Vps55 64 kFltgvlvvsgiaLpivLahagiikwg 90
                 Fl +v+v+++ ++ + L +++ ++  
  EHT98602.1  4 TFLLAVIVMTAAGIVVFLFRQDSVHCI 30
                699999*****9999999998776655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0001
       Vps55  54 eessalkdlakFltgvlvvsgiaLpivLahagiikw 89 
                 +++ + ++  k+l ++++  g  +p+v++++gi +w
  EHT98602.1 100 DNQMSQQEQQKWLPAFFINVGATFPFVIKRTGIDTW 135
                 46788999***********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1135.10
//
Query:       EHT98603.1  [L=167]
Description: fimbrial protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   25.3   2.6    2.9e-05   24.3   2.6    1.6  1  FimA      Type-1 fimbrial protein, A
     0.0059   16.4   0.3      0.012   15.5   0.3    1.7  1  DUF2574   Protein of unknown function (DUF2574)


Domain annotation for each model (and alignments):
>> FimA  Type-1 fimbrial protein, A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   2.6   3.3e-09   2.9e-05       1      80 [.      58     135 ..      58     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.3e-09
        FimA   1 lptvsrkalkdvGetaGltvfdvkltectsaldGa.qvklffesGssvdyvsgnlkaiaadaaGveqvqllkadnvqanld 80 
                 lptvs   l  + +taG t+f ++lt+c     G+ q  +   +G  +   +g+l +    +a ++ ++ll++++   +l 
  EHT98603.1  58 LPTVSTAELSTAKSTAGKTPFTINLTGCVAPDAGStQAMAINLAGNNISP-TGDLLNTG--TAENVALRLLDSNDNAIDLS 135
                 8***************************9998888666666666666654.44444432..33445555555544444444 PP

>> DUF2574  Protein of unknown function (DUF2574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.3e-06     0.012       9      46 ..      13      50 ..       7     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-06
     DUF2574  9 iivlayGlsspvfasdtatltisGkvtaptcsaevvna 46
                ++ +a  +s  vfa+   t+  +G+v a tc+++v +a
  EHT98603.1 13 VVWSASLMSCHVFAASENTIRFQGEVNAQTCNVNVNDA 50
                56788899**************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1448.48
//
Query:       EHT98604.1  [L=229]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-15   56.5   0.0    1.6e-14   53.9   0.0    2.2  2  HTH_Tnp_1     Transposase
    1.4e-06   27.9   0.0      0.017   14.9   0.0    2.3  2  HTH_23        Homeodomain-like domain
     0.0034   17.5   0.0       0.66   10.2   0.0    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.054   13.4   0.1       0.68    9.9   0.0    2.3  2  MarR_2        MarR family
      0.084   13.4   0.2        3.4    8.3   0.0    2.6  3  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.9e+03      14      38 ..       9      33 ..       8      37 .. 0.83
   2 !   53.9   0.0   4.6e-18   1.6e-14       3      57 ..      91     145 ..      89     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspn 38
                +++++ +++    +e  rr+g+ + 
  EHT98604.1  9 EALHLHFDENLARVEAGRRLGIPKT 33
                67788889999999999****9875 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 4.6e-18
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspae 57 
                 rr  ++++fK+++V+ sl+pg++v+++Ar+ g+++n L++Wr++yr+g++ +  +
  EHT98604.1  91 RRPNFPRAFKIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRKGLLLPHNS 145
                 6789******************************************999876665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.8e-06     0.017       9      46 ..       9      47 ..       7      48 .. 0.88
   2 !   10.7   0.0   9.7e-05      0.35      11      46 ..     104     139 ..      97     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ +  l + e+ r+Lg+++ Tv+    r+r+ Gl
  EHT98604.1  9 EALHLHFDeNLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                67777776699999*********************9998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                 +   ++ G +v++ Are g++ + + +w++ y ++Gl
  EHT98604.1 104 VEKSLQpGTNVAQLARENGINDNLLFNWRSLY-RKGL 139
                 4445568999**********************.5775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0076        27      11      41 ..      16      47 ..       5      53 .. 0.81
   2 !   10.2   0.0   0.00018      0.66       2      40 ..     100     138 ..      99     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0076
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGi 41
                + + ++ ea r+lgi  +tv ++  r+++ G+
  EHT98604.1 16 DENlARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                45557889************999999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00018
      HTH_28   2 Rleiikllaa.GhsvreaArelgisrrtvyrWikryeegG 40 
                 ++  ++  ++ G +v+++Are gi+   +  W++ y++ G
  EHT98604.1 100 KIALVEKSLQpGTNVAQLARENGINDNLLFNWRSLYRK-G 138
                 5555655565588************************9.5 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019      0.68      10      50 ..       7      47 ..       4      47 .. 0.91
   2 ?    0.7   0.0      0.14     5e+02      18      33 ..     110     123 ..     102     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l+  e  rrlg++k +v  +  r+ +aGL
  EHT98604.1  7 LLEALHLHFDENLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                6888888888889999***********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 TTSEEEHHHHHHHHTS CS
      MarR_2  18 pgrdltvgelarrlgl 33 
                 pg   +v++lar+ g+
  EHT98604.1 110 PG--TNVAQLARENGI 123
                 66..799******998 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058   2.1e+02      25      55 ..      18      48 ..      10      51 .. 0.86
   2 ?    8.3   0.0   0.00094       3.4      14      71 ..     100     154 ..      85     166 .. 0.78
   3 ?   -2.9   0.0       2.9     1e+04      59      71 ..     207     219 ..     196     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.058
  LZ_Tnp_IS481 25 rrtvaqvarelGvslrtaykwlarfraeGld 55
                  + +  ++ r lG+ + t      rfr  Gl 
    EHT98604.1 18 NLARVEAGRRLGIPKTTVCDLFVRFRKAGLS 48
                  5555678999*****************9995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00094
  LZ_Tnp_IS481  14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldrssrPrrvPkat 71 
                   ++ lv++ ++    vaq are G+  +  + w + +r  Gl  ll   s P   P   
    EHT98604.1 100 KIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRK-GL--LLPHNSEPALLPVML 154
                   56799***************************999984.44..455666666666555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
  LZ_Tnp_IS481  59 drssrPrrvPkat 71 
                    r sr   +P+a 
    EHT98604.1 207 KRGSRCSPSPQAH 219
                   5777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1911.77
//
Query:       EHT98605.1  [L=39]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   24.0   0.0    2.9e-05   23.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.9e-05      71     100 ..       2      30 ..       1      31 [. 0.92

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-09
   TnpB_IS66  71 wpkeeeeeaveltaeqlelLleGldlervk 100
                 wp  +++++v+lt++ql++LleG+++++++
  EHT98605.1   2 WPL-TRDGKVHLTPAQLSMLLEGINWKHPQ 30 
                 996.9999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.28s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 290.24
//
Query:       EHT98606.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-98  328.5   3.2    7.1e-98  327.5   0.1    2.0  2  DDE_Tnp_IS66    Transposase IS66 family
    1.3e-16   60.5   0.0    5.2e-16   58.6   0.0    2.1  1  DDE_Tnp_IS66_C  IS66 C-terminal element
    9.5e-15   54.7   2.3    2.2e-14   53.6   2.3    1.7  1  zf-IS66         zinc-finger binding domain of transposase IS6
    2.6e-12   47.3   6.0    5.7e-12   46.2   6.0    1.6  1  LZ_Tnp_IS66     Transposase C of IS166 homeodomain
     0.0089   16.3   1.2      0.017   15.4   1.2    1.4  1  Troponin        Troponin
  ------ inclusion threshold ------
      0.026   14.4   0.3      0.076   12.9   0.3    1.8  1  Shugoshin_N     Shugoshin N-terminal coiled-coil region
      0.026   14.3   5.1      0.042   13.6   5.1    1.2  1  FAM184          Family with sequence similarity 184, A and B
      0.068   13.5   2.9       0.15   12.4   1.1    2.3  2  Csm1_N          Csm1 N-terminal domain
       0.13   12.0   0.9       0.52   10.0   0.5    2.0  2  LXG             LXG domain of WXG superfamily
       0.16   12.0   2.9        1.6    8.8   0.1    2.8  2  DUF1192         Protein of unknown function (DUF1192)
       0.18   11.3   5.1       0.17   11.5   3.2    1.8  2  HAUS-augmin3    HAUS augmin-like complex subunit 3
       0.28   10.7   2.0       0.75    9.3   0.3    2.0  2  Exonuc_VII_L    Exonuclease VII, large subunit
       0.54    8.7  10.5      0.038   12.5   4.7    1.9  2  FUSC            Fusaric acid resistance protein family
       0.89    9.3   9.7        1.5    8.6   9.7    1.2  1  ERM             Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.9      0.16   2.1e+02     167     213 ..      34      81 ..      19     124 .. 0.57
   2 !  327.5   0.1  5.5e-101   7.1e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.16
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea.eaeerlalrqeesrpllaeleaw 213
                   sq++a   ++i++l+a+ ++++++   +  ++lr++++r++ ++ e+ 
    EHT98606.1  34 SQRVAAYTSEINRLKALVAKLQRMqFGKSSEKLREKTARQVCEAEERI 81 
                   566777777788888888888633322445555555555555444442 PP

  == domain 2  score: 327.5 bits;  conditional E-value: 5.5e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98606.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98606.1 284 DRnagsqlPPAVWFAYSPDRKGMHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +ae+rla+r++++  l+++l++w+++q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags+ G+e
    EHT98606.1 380 GSPAEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDSGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   4.1e-19   5.2e-16       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 4.1e-19
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL  ++d ++++++++LLPW
      EHT98606.1 479 SLIGTCRLNGVEPEAWLRYVLGYIQD-WSVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   2.3   1.7e-17   2.2e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.7e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l+ +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98606.1 128 ETACPACGGELSALGCD-VSEQLELISSAFKVIETQRPKLACCQCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   6.0   4.5e-15   5.7e-12       1      68 [.      46     121 ..      46     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 4.5e-15
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE.ltardpeQleL...aleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE l+++++ Q +     + +l++e aev  +    + +++ r++  RkpLpa+LPRe+
   EHT98606.1  46 RLKALVAKLQRMQFGKSSEkLREKTARQVCEaeeRIGALQEEMAEVLGEqhdpVLPQPLRQSSARKPLPATLPRET 121
                  79*****************966777777777555667888888888888999999*******************97 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.2   1.3e-05     0.017      46     110 ..       9      76 ..       3      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH..H CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade..k 110
                 ++ l++l ++ +  i++l+e    + + va  + ei+ lk  v +l+ + f+k + K   kta++  +
  EHT98606.1   9 NARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMqFGKSSEKLREKTARQvcE 76 
                 479*******************************************9999*******99999988441 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     6e-05     0.076       9      34 ..      23      48 ..      18      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
  Shugoshin_N  9 NreLAKsNsalslkirelekevseLl 34
                 +r+LA  N +ls+++  +++e+++L+
   EHT98606.1 23 IRQLAEYNRLLSQRVAAYTSEINRLK 48
                 69***********************8 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.1   3.3e-05     0.042     114     197 ..      10      97 ..       7     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyEe 197
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v +++e++ +l++e++++ +e+ +
  EHT98606.1  10 ARLRALLQEQQTTIrqlAEYNRLLSQRVAAYTSEINRLKALvAKLQRMQFGKSSEKLREKTARQVCEAEERIGALQEEMAEVLGEQHD 97 
                 678888888877775667778889**************9862678999***********************************99876 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.1   0.00012      0.15      22      56 ..      23      57 ..      16      73 .. 0.80
   2 ?   -0.6   0.1       1.3   1.7e+03      34      53 ..      72      91 ..      68      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + +l + N++Lsq++  ++ ei++Lk+ +a+l+  
  EHT98606.1 23 IRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRM 57
                6777888************************9864 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
      Csm1_N 34 qkletkdqeiesLkeqlael 53
                +++   +++i +L+e++ae+
  EHT98606.1 72 RQVCEAEERIGALQEEMAEV 91
                56667789999999999876 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5    0.0004      0.52     152     193 ..      17      58 ..       8      65 .. 0.87
   2 ?   -0.3   0.0      0.58   7.5e+02      98     141 ..      64     107 ..      62     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti++l ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98606.1  17 QEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.58
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvsdivslpeldds 141
                 ++L++  ++++ +a+e + +l++e+ ++l +  d v  ++l  s
  EHT98606.1  64 EKLREKTARQVCEAEERIGALQEEMAEVLGEQHDPVLPQPLRQS 107
                 6788888899999***************9999998877777655 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0012       1.6      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    2.2   0.4      0.15   1.9e+02      24      37 ..      76      89 ..      73      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+ ++EI Rl+a +ak
  EHT98606.1 33 LSQRVAAYTSEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
     DUF1192 24 ELeerIalLeaEIa 37
                E eerI +L++E a
  EHT98606.1 76 EAEERIGALQEEMA 89
                779*********87 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.2   0.00013      0.17      68     152 ..      11      97 ..       2     112 .. 0.88
   2 ?   -1.8   0.0       1.4   1.8e+03     132     166 ..     383     417 ..     375     434 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  HAUS-augmin3  68 llevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                    l++ l+e+++++++L++  + L +  a  +++ n+L++++a+lq+ +  ++ e+  +++++++ ea+e ++a   e+ +vL ++ +
    EHT98606.1  11 RLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQfgKSSEKLREKTARQVCEAEERIGALQEEMAEVLGEQHD 97 
                   45677889999999**99999999999*****************98874477888899************************98766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
  HAUS-augmin3 132 aqeelraenaetnavLqqlteeakqlaeyfeeaek 166
                   a++ l+++ a+t a++q+l +  +++++ ++  + 
    EHT98606.1 383 AEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSD 417
                   56778899999999999999999988888887664 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00059      0.75     144     229 ..      11      96 ..       5     189 .. 0.67
   2 ?    0.8   0.1      0.22   2.9e+02     125     177 ..     351     415 ..     343     453 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00059
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerlkekleekk 229
                   +l++ l+e++  +++ ++ + +  +qr+ +++s++++ ++l+++  r ++ + +e+l++++++q+ +++er+  l+e++ e l e++
    EHT98606.1  11 RLRALLQEQQTTIRQLAE-YNRLLSQRVAAYTSEINRLKALVAKLqRMQFGKSSEKLREKTARQVCEAEERIGALQEEMAEVLGEQH 96 
                   444445555555444443.33445677888888888777755543388888889999999999999999999999988743333333 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............eeqleelerrlekaikrlleekkqrleklasr 177
                   d+ a TPt +   +++++ +l            e++l+  ++r+   +++l +  +++++ l+++
    EHT98606.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaEDRLAVRKARTVALMQSLYDWIQSQMKVLSRH 415
                   78899999999999988877777777777777755555555565555555554444444333333 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.7     3e-05     0.038     212     295 ..       4      96 ..       1     140 [. 0.79
   2 ?   -1.4   0.3      0.49   6.3e+02     204     262 ..     378     428 ..     337     456 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
        FUSC 212 prirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale......a 295
                 +  ++++++lr+ll+++++ +++l ++ rll +  a+ + +   l+al+a+l+++    +++++ e+++ ++ + ++r+ al+++ +      +
  EHT98606.1   4 S-PPDENARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMqfgkSSEKLREKTARQVCEAEERIGALQEEMAevlgeqH 96 
                 3.4899***********************************999***********999977778888888888888888888887765544440 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.49
        FUSC 204 rsqaayesprirararalrrllsrmlallal.lsslarllarlraeeaaavpelaallae 262
                 +    +e++        l+   +r++al+++ ++ ++++++ l++++++a +++a ll++
  EHT98606.1 378 IRGSPAEDR--------LAVRKARTVALMQSlYDWIQSQMKVLSRHSDTA-KAFAYLLKQ 428
                 333333333........333333333333220233334444444433333.234444444 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.7    0.0012       1.5      20     100 ..       8      90 ..       6      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
         ERM  20 eaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 e ++ ++ L+e++ t+++Lae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++ eae+++  l+ee+ +
  EHT98606.1   8 ENARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQfgKSSEKLREKTARQVCEAEERIGALQEEMAE 90 
                 66777889**********************************999999887335577788*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1166  (0.0650343); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 3762.40
//
Query:       EHT98607.1  [L=258]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-23   81.0   0.0    9.2e-23   80.6   0.0    1.2  1  DDE_3     DDE superfamily endonuclease
    1.5e-06   27.8   4.9    2.7e-06   26.9   0.3    2.8  3  HTH_33    Winged helix-turn helix
     0.0064   17.1   1.0      0.013   16.1   0.1    2.0  2  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   1.5e-26   9.2e-23       2     142 ..      92     231 ..      91     235 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.5e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98607.1  92 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 190
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98607.1 191 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 231
                 *9.9*****************************998877776 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.3   4.5e-10   2.7e-06       3      52 ..      23      72 ..      21      77 .. 0.95
   2 ?    1.9   0.1     0.029   1.7e+02      28      42 ..     155     169 ..     149     170 .. 0.86
   3 ?   -1.9   0.0      0.44   2.6e+03      25      33 ..     229     237 ..     211     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.5e-10
      HTH_33  3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52
                 rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98607.1 23 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 72
                69**********************************************98 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.029
      HTH_33  28 yrlLkrlGfsyqkPr 42 
                  rlLk+l+ +y++++
  EHT98607.1 155 IRLLKHLKATYRRAK 169
                 59**********997 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.44
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98607.1 229 SSMWQLLKK 237
                 789999986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.2e-06     0.013      37      73 .]       7      51 ..       3      51 .. 0.85
   2 ?   -2.1   0.0         1   6.2e+03      46      47 ..     188     189 ..     158     224 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-06
      HTH_32 37 iiallreep........rWsprqlaarlaeregvkvShstvyriL 73
                +++l+++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98607.1  7 LRELVKHSPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 51
                67888556688888889***********7777888********98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
      HTH_32  46 rW 47 
                 rW
  EHT98607.1 188 RW 189
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1984.44
//
Query:       EHT98608.1  [L=394]
Description: translation elongation factor Tu [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-59  198.8   0.0    8.8e-59  198.3   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      1e-33  116.0   0.0      2e-33  115.0   0.0    1.5  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    2.1e-19   69.7   4.7    4.6e-19   68.6   4.7    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    9.9e-05   22.4   0.0     0.0002   21.4   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.034   13.8   0.2      0.094   12.3   0.0    1.7  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
       0.37   10.6   2.5       0.83    9.5   2.5    1.5  1  Lsm_C        Lsm C-terminal


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   0.0   2.9e-62   8.8e-59       2     193 ..      11     201 ..      10     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 2.9e-62
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                  ++n+g+ighvDhGKtTLt ++++ + +++  +++a +  ++D+++eE++rgiTi++a++++e  t +++++++D+PGH+d++k++i+g++++Dga+lv
  EHT98608.1  11 LHVNVGTIGHVDHGKTTLTAAITTVLAKTNGGQARAFD--QIDSTPEEKARGITINTAHVEYE--TPSRHYAHVDCPGHADYVKNMITGAAQMDGAILV 105
                 599*************************9998888864..5**********************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB........THHHHHHHHH CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge........gvktllealv 189
                 v+a++G++pqt+e++ l +++gvp iivf+NK+D++ ++el e+ve+  ++l      l++y + g+ ++p+v+gSalk+         ++ +l + l+
  EHT98608.1 106 VAATDGPMPQTREHILLGRQVGVPyIIVFLNKCDMVdDEELLELVEMEVRDL------LSQYDFPGD-DTPIVRGSALKALegnpeweeKIVELANHLD 197
                 ************************************99**************......********6.************9777777777778888888 PP

                 HHSH CS
    GTP_EFTU 190 ellp 193
                 +++p
  EHT98608.1 198 NYIP 201
                 8887 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   6.7e-37     2e-33       1     111 [.     298     392 ..     298     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 6.7e-37
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  +ikphtkfe++vy+l+k+   rhtp+++gYrp++y+rt+dvtg  veL       +e+v     e+v+pGdn+++ v+li+pia+++g       rFa
   EHT98608.1 298 TIKPHTKFESEVYVLSKDeggRHTPFFKGYRPQFYFRTTDVTG-SVEL-------PEGV-----EMVMPGDNIKMVVTLIHPIAMDEGL------RFA 376
                  59*****************************************.9***.......9999.....*************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iReggrTv+aGvv ++
   EHT98608.1 377 IREGGRTVGAGVVAKV 392
                  **************98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   4.7   1.5e-22   4.6e-19       1      73 [.     225     293 ..     225     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.5e-22
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtv++grv++G++k+Gdev+i+g +dt k    ++ +++e+f++ +d+  ag+n+Gv++++++ ed i++G++l
   EHT98608.1 225 GTVVTGRVERGVVKVGDEVEIVGiKDTAK----STCTGVEMFRKLLDQGQAGENCGVLLRGIKRED-IQRGQVL 293
                  9**********************999955....5********************************.******9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.8e-08    0.0002       2     112 ..      15     134 ..      14     137 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.8e-08
                 EEEEESTTSSHHHHHHHHHT..............S..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg..............e..kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 v+ +G+   GK+tL  a+t               +      ++  g T+++ + ++++  +++  vD+pG  +       +++ +    ++d ++lvv 
  EHT98608.1  15 VGTIGHVDHGKTTLTAAITTvlaktnggqarafdQidSTPEEKARGITINTAHVEYETPSRHYAHVDCPGHAD------YVKNMITGAAQMDGAILVVA 107
                 899****************5555555555544432213344555588888888888877799********333......566667777789**999999 PP

                 TTTTCSHHHHHHHHHHHHHTTSEEEEEE CS
    MMR_HSR1  85 aseeklkpldeeleelleeakkplilvl 112
                 a+ ++  p+ +e   l ++ + p+i+v+
  EHT98608.1 108 AT-DGPMPQTREHILLGRQVGVPYIIVF 134
                 77.5566666666666677888877653 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.83   2.5e+03       8      21 ..      20      33 ..      14      45 .. 0.67
   2 ?   12.3   0.0   3.2e-05     0.094     103     171 ..      90     159 ..      80     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.83
                STTCCHHHHHHHHH CS
        cobW  8 flGsGKTtLlnhll 21
                 +  GKTtL  +++
  EHT98608.1 20 HVDHGKTTLTAAIT 33
                55569999977665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.2e-05
                 SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC..HHHHHHHHHHHHT CS
        cobW 103 eeelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldeeallekleerlrqlnp 171
                 ++ ++ ++++d+ + vv a+     +++++ ++++q+ +  ++v lnK+D++d+e+lle +e ++r+l +
  EHT98608.1  90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVfLNKCDMVDDEELLELVEMEVRDLLS 159
                 556778999**********999899999999********9987758***********9*99999998765 PP

>> Lsm_C  Lsm C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5   0.00028      0.83      13      42 ..     231     260 ..     227     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00028
                 ...TTTEEEETTTTEEEETTTEEEETTEEE CS
       Lsm_C  13 nlrpglVkvieeanvvvvldrikVsekGVe 42 
                 ++++g+Vkv +e+++v + d+ k +  GVe
  EHT98608.1 231 RVERGVVKVGDEVEIVGIKDTAKSTCTGVE 260
                 7899*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3143.39
//
Query:       EHT98609.1  [L=127]
Description: preprotein translocase membrane subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-20   73.0   0.9    1.4e-20   73.0   0.9    2.7  3  SecE          SecE/Sec61-gamma subunits of protein translocat
  ------ inclusion threshold ------
       0.18   11.2   2.7       0.27   10.7   2.7    1.3  1  DUF1129       Protein of unknown function (DUF1129)
       0.29   11.0   6.4       0.19   11.6   2.2    2.4  2  EptA_B_N      Phosphoethanolamine transferase EptA/EptB
        0.7    9.7  10.6       0.83    9.4  10.6    1.1  1  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr
        9.3    6.4   8.7        3.9    7.6   2.7    2.1  2  SLATT_3       SMODS and SLOG-associating 2TM effector domain 


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.8       0.1   3.7e+02      28      40 ..      19      31 ..      15      32 .. 0.62
   2 ?   -0.9   0.6      0.44   1.6e+03      30      41 ..      46      57 ..      43      62 .. 0.60
   3 !   73.0   0.9   3.8e-24   1.4e-20       2      54 ..      70     122 ..      69     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
                HHHHHHHHHHHHH CS
        SecE 28 vVlvfvvimglfl 40
                 V+v+ +++++++
  EHT98609.1 19 WVVVVLLLLAAIV 31
                4666666666665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.44
                HHHHHHHHHHHH CS
        SecE 30 lvfvvimglflf 41
                l++v+++++ ++
  EHT98609.1 46 LAVVILIAAAGG 57
                455555555554 PP

  == domain 3  score: 73.0 bits;  conditional E-value: 3.8e-24
                 HCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE   2 kFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfsklinll 54 
                  F +e+++E++KV+WPtr+E+l+tt++V++++++m+l+l+++D ++ +l++++
  EHT98609.1  70 AFAREARTEMRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFI 122
                 69*************************************************98 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.7   7.4e-05      0.27      92     187 ..      24     124 ..       5     126 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.4e-05
     DUF1129  92 fallfgila.lfskk.kqtasiGlitlllvalvgGlamvlvyrlltre....kkkkkrpplwkrllilllllvvwlvlftlvallpaviNpvLpplvli 184
                 + ll +i++ ++ ++ +      l +++l+a+ gG+a++++    t      ++++ r+ +w +   +l ++++  +++++++l+   +   L  lv++
  EHT98609.1  24 LLLLAAIVGnYLYRDvTLPL-RALAVVILIAAAGGIALLTTKGKATVAfareARTEMRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSF 121
                 33444444312222203333.58999************9998777666344466677777777777777777777777777788888888888888887 PP

     DUF1129 185 iig 187
                 i g
  EHT98609.1 122 ITG 124
                 766 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   5.3e-05      0.19      71     138 ..      20      86 ..      14      90 .. 0.68
   2 ?   -0.8   0.1      0.36   1.3e+03     103     111 ..      97     105 ..      86     117 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                 HHHHTHHHHHHHHH-EE----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-T.TGGGGSTTH CS
    EptA_B_N  71 llllgvlPallllrvkikrksllkellkrlalllvallvivlvallfykdyaslfRnnk.elrylinPt 138
                 ++++ +l a+++   ++ ++++   l   ++++l+a++  ++++++  k ++++ R+ + e+r+ i Pt
  EHT98609.1  20 VVVVLLLLAAIV--GNYLYRDVTLPLRALAVVILIAAAGGIALLTTKGKATVAFAREARtEMRKVIWPT 86 
                 333222222222..333445555556555688888889999999999999********98********8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
                 HHHHHHHHH CS
    EptA_B_N 103 llvallviv 111
                 +++  +v+ 
  EHT98609.1  97 VAAVTAVMS 105
                 222222222 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  10.6   0.00023      0.83      47     131 ..      21     107 ..       2     118 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00023
  Trp_oprn_chp  47 alAlvllAaavAvlavrglg..rrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaaveltawpvlalaggvllll 131
                    + l+llAa+v  ++ r +   +r+++v++++a+ag ++   +   ++ + ar+a++++ +v   + + +l +  ++a++ +v+ l+
    EHT98609.1  21 VVVLLLLAAIVGNYLYRDVTlpLRALAVVILIAAAGGIALLTTKGKATVAFAREARTEMRKVIWPTRQETLHTTLIVAAVTAVMSLI 107
                   57799************8752268888888777776665555555555666666665555555555555544555555555555443 PP

>> SLATT_3  SMODS and SLOG-associating 2TM effector domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.7    0.0011       3.9      19      71 ..      14      67 ..       3      84 .. 0.77
   2 ?    2.8   0.6     0.034   1.2e+02      26      42 ..      92     108 ..      71     126 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
     SLATT_3 19 lrllrlr.lvllvvAAlaaalslkvgsvdlaallaalafllalvievvlarrrp 71
                l++l++  +vll++AA+++ + ++  ++ l al+ +++ ++a +i +++++ ++
  EHT98609.1 14 LEALKWVvVVLLLLAAIVGNYLYRDVTLPLRALAVVILIAAAGGIALLTTKGKA 67
                56666651567899******9999988888888888888888888877776554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.034
     SLATT_3  26 lvllvvAAlaaalslkv 42 
                  ++l+vAA++a++sl +
  EHT98609.1  92 HTTLIVAAVTAVMSLIL 108
                 35688888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1030  (0.0574488); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1060.54
//
Query:       EHT98610.1  [L=181]
Description: transcription termination factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-27   95.5   0.0    2.8e-27   95.1   0.0    1.2  1  NusG      Transcription termination factor nusG
    1.1e-08   34.7   0.0    6.1e-08   32.4   0.1    2.2  2  KOW       KOW motif


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   3.1e-31   2.8e-27       1      95 []       7     112 ..       7     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 3.1e-31
                 -EEEEEEE-TTTHHHHHHHH...HHHCT-.....EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---CHHHHHHHCSTTEEEE-EETT.SSCC-EB CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxx.....xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        NusG   1 kkWYvlqvepgkekkvkenL...leeegl.....evivPaeekveirqgkkk....klfpgyifikadmndkllmairktpgVtgfvrvgg.eskpvpl 86 
                 k+WYv+q  +g+e +v+++L   ++++++     +v+vP+ee+veir g+++    k+fpgy+++++ mnd +++++r++p+V+gf+  gg +++p+p+
  EHT98610.1   7 KRWYVVQAFSGFEGRVAQSLrehIKLHNMeelfgDVMVPTEEVVEIRGGQRRkserKFFPGYVLVQMVMNDASWHLVRSVPRVMGFI--GGtSDRPAPI 103
                 79******************999888888999***************666666999*******************************..77699***** PP

                 -HHHHHHHH CS
                 xxxxxxxxx RF
        NusG  87 seeevqnil 95 
                 s++ev++i+
  EHT98610.1 104 SDKEVDAIM 112
                 ******986 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.19   1.7e+03      12      20 ..      15      23 ..      14      29 .. 0.77
   2 !   32.4   0.1   6.8e-12   6.1e-08       1      31 [.     130     160 ..     130     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
                TTTCEEEEE CS
         KOW 12 hkGktGkVv 20
                + G++G+V 
  EHT98610.1 15 FSGFEGRVA 23
                678999885 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 6.8e-12
                 TTSEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 pG++V+V +Gp++++ G+V++vd++k r +v
  EHT98610.1 130 PGEMVRVNDGPFADFNGVVEDVDYEKSRLTV 160
                 8*************************55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1569.11
//
Query:       EHT98611.1  [L=142]
Description: 50S ribosomal subunit protein L11 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-31  107.1   0.2    4.7e-31  106.4   0.2    1.4  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    6.9e-27   93.8   2.1      1e-26   93.2   2.1    1.3  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain
  ------ inclusion threshold ------
       0.02   15.3   0.5      0.063   13.7   0.2    1.9  2  DUF3140          Protein of unknown function (DUF3140)


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.2   7.9e-35   4.7e-31       1      65 []       2      67 ..       2      67 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 7.9e-35
  Ribosomal_L11_N  1 akkvvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkd.kkglripVkitvyqdrsf 65
                     akkv ++vkl+v aG A+p+Pp+GpaLG+ G+ni++fck+fn++T+  +kgl+ pV+itvy+drsf
       EHT98611.1  2 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTESlEKGLPTPVVITVYSDRSF 67
                     699*******************************************9******************9 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   2.1   1.7e-30     1e-26       1      70 []      72     140 ..      72     140 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 1.7e-30
                    ---SHHHHHHHHHTXSSXXSSTTTSXXEEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   1 ktPptsylLkkaagiekgsgkpgketvGtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    ktPp+++lLkkaagi++gsgkp+k++vG+v+ +qv+eIA++K  d++ + ++ea+++si gtArsmG+ V
     EHT98611.1  72 KTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTRAQVREIAETKAADMTGS-DVEAMTRSIEGTARSMGLVV 140
                    8**********************************************77.9****************987 PP

>> DUF3140  Protein of unknown function (DUF3140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   2.5e+03      35      35 ..      24      24 ..       2      52 .. 0.54
   2 ?   13.7   0.2     1e-05     0.063      20      69 ..      83     132 ..      77     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
     DUF3140 35 v 35
                v
  EHT98611.1 24 V 24
                3 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1e-05
     DUF3140  20 eeSkevgekkdggesvghesGrkiveilrkkkadltdddlehmrkVvgyv 69 
                  +  ++g  k ++++vg+ +  ++ ei ++k ad+t +d+e+m + ++  
  EHT98611.1  83 AAGIKSGSGKPNKDKVGKVTRAQVREIAETKAADMTGSDVEAMTRSIEGT 132
                 4555677777779******************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 1336.89
//
Query:       EHT98612.1  [L=234]
Description: 50S ribosomal subunit protein L1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-52  177.8   0.2    2.8e-52  177.4   0.2    1.1  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.2   1.6e-56   2.8e-52       1     203 [.      30     219 ..      30     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 1.6e-56
                   HHHHS-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEE CS
  Ribosomal_L1   1 LlkhakkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlf 97 
                   L++ a++kf esv++a+nl +++ +k+dq+++g  +Lph++g++v+++++t++ +ae    ak+ag  a+ +g+++l +++      +k+ ++fd++
    EHT98612.1  30 LKELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAE---AAKAAG--AELVGMEDLAEQI------KKGEMNFDVV 114
                   788999*************.*************************************...9*****..*************......9********* PP

                   EEEGGGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT..SGS CS
  Ribosomal_L1  98 laddrimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkk..wkn 192
                   +a+++ m+ +++ LG+v+g+r++mP+p+   gtv+++v+++v++a++++v +r+dk+++++  +Gk++f+a++l+eN+e+++ al++++p++  + +
    EHT98612.1 115 IASPDAMRVVGQ-LGQVLGPRGLMPNPK--VGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLESLLVALKKAKPAQakGVY 208
                   ************.***************..99********************************************************999888*** PP

                   EEEEEEEETTS CS
  Ribosomal_L1 193 iksiylkttms 203
                   ik+++++ttm+
    EHT98612.1 209 IKKVSISTTMG 219
                   **********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1933.36
//
Query:       EHT98613.1  [L=165]
Description: 50S ribosomal subunit protein L10 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-25   88.3   0.0    4.1e-25   87.8   0.0    1.2  1  Ribosomal_L10  Ribosomal protein L10


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   2.3e-29   4.1e-25       3     100 .]       5     101 ..       3     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 2.3e-29
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.SSCGCCSSSEEEEEESS-TCHHHHCCCCC CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeeklkellkgpvalvftnedpvalakvleef 98 
                     ++K+++v+e++e +k + s+vv+d +g+tv +++elRk+ re+g+ ++vv+ntl+rr++e+t++e +lk+ ++gp++++++ e+p a+a+++++f
     EHT98613.1   5 LQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFE-CLKDTFVGPTLIAYSMEHPGAAARLFKDF 99 
                    589**************************************************************7.***************************** PP

                    HH CS
  Ribosomal_L10  99 ak 100
                    ak
     EHT98613.1 100 AK 101
                    87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1268.75
//
Query:       EHT98614.1  [L=120]
Description: 50S ribosomal subunit protein L7/L12 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-25   89.6   9.2    1.3e-25   89.6   9.2    1.7  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    2.1e-17   62.6  11.7    2.1e-17   62.6  11.7    2.9  3  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
       0.13   11.7   4.6       0.29   10.6   4.6    1.6  1  Esterase_phd     Esterase PHB depolymerase
       0.15   12.8   0.4       0.37   11.6   0.1    1.8  2  DUF2279          Predicted periplasmic lipoprotein (DUF2279)
       0.17   12.3   0.0       0.52   10.7   0.0    1.7  2  DUF2805          Protein of unknown function (DUF2805)


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.79   2.8e+03      32      38 ..      22      28 ..       7      52 .. 0.55
   2 !   89.6   9.2   3.5e-29   1.3e-25       1      67 []      55     120 .]      55     120 .] 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.79
                   HHHTTTT CS
  Ribosomal_L12 32 dlVeaap 38
                   +lV a+ 
     EHT98614.1 22 ELVSAME 28
                   3333332 PP

  == domain 2  score: 89.6 bits;  conditional E-value: 3.5e-29
                    EEEEEEE-TT-HHHHHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEEE CS
  Ribosomal_L12   1 fdViLksagakKiaVIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevelk 67 
                    fdViLk++ga+K+aVIKaVr++tglgLkeaKdlVea++ v+keg+sk++A ++ ++L+eaGAeve+k
     EHT98614.1  55 FDVILKAVGANKVAVIKAVRTATGLGLKEAKDLVEATG-VIKEGISKDDAAALEAALKEAGAEVEVK 120
                    9**********************************986.8*************************98 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6  11.7   5.7e-21   2.1e-17       1      45 [.       4      48 ..       4      51 .. 0.94
   2 ?    2.0   0.2     0.047   1.7e+02      12      23 ..      79      90 ..      65      91 .. 0.86
   3 ?   -1.6   0.4      0.63   2.3e+03      34      41 ..     104     109 ..      97     116 .. 0.41

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 5.7e-21
                     HHHHHHHHHHTSBHHHHHHHHHHHHHHTTHHHHHHHHHH.HHHHH CS
  Ribosomal_L12_N  1 kieeiieaikeltvLElseLvkalEekFGVsAAAPvavaaaaaaa 45
                     ++++i+ea+++++v+E++eLv+a+EekFGVsAAA+vavaa++a a
       EHT98614.1  4 TKDQILEAVAAMSVMEVVELVSAMEEKFGVSAAAAVAVAAGPAEA 48
                     79*************************************998877 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.047
                     SBHHHHHHHHHH CS
  Ribosomal_L12_N 12 ltvLElseLvka 23
                     l + E+++Lv+a
       EHT98614.1 79 LGLKEAKDLVEA 90
                     6699******87 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.63
                      HHHHHH.H CS
  Ribosomal_L12_N  34 APvavaaa 41 
                      A+    aa
       EHT98614.1 104 AALE--AA 109
                      2222..23 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.6     8e-05      0.29      81     166 ..      20     115 ..      10     119 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8e-05
  Esterase_phd  81 vvalvdalvdehrvdaa.rvyvaGlsaGaa........ladllalhypdvfaavalhsGlalGeaadvisaldvmrrGlrqapaaavda.lveaga 166
                   vv lv a+ ++ +v aa  v va   a a         + + ++     v  av   +Gl l ea+d + a  v+++G+ ++ aaa +a l eaga
    EHT98614.1  20 VVELVSAMEEKFGVSAAaAVAVAAGPAEAVeektefdvILKAVGANKVAVIKAVRTATGLGLKEAKDLVEATGVIKEGISKDDAAALEAaLKEAGA 115
                   67777777777777654156666555544211111111334567777788899999*************************999998862667776 PP

>> DUF2279  Predicted periplasmic lipoprotein (DUF2279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001      0.37      45      86 ..       7      48 ..       1      53 [. 0.87
   2 ?   -0.9   0.0      0.81   2.9e+03      60      60 ..      83      83 ..      55     115 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
     DUF2279 45 alaasllslalmlymElgDsfkessGFsyeDvianlsGaala 86
                 ++ ++ ++++m ++El  + +e +G s    +a ++G a a
  EHT98614.1  7 QILEAVAAMSVMEVVELVSAMEEKFGVSAAAAVAVAAGPAEA 48
                5778899***********************999999998776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.81
     DUF2279 60 E 60
                E
  EHT98614.1 83 E 83
                1 PP

>> DUF2805  Protein of unknown function (DUF2805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   4.6e+03      16      27 ..      26      37 ..      24      41 .. 0.76
   2 ?   10.7   0.0   0.00014      0.52       7      34 ..      48      75 ..      46      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
     DUF2805 16 aIeeqfglseke 27
                a ee+fg+s + 
  EHT98614.1 26 AMEEKFGVSAAA 37
                679999998765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
     DUF2805  7 AweDRtpFeaIeeqfglsekeviklMrk 34
                A e++t F++I +  g ++  vik  r+
  EHT98614.1 48 AVEEKTEFDVILKAVGANKVAVIKAVRT 75
                89*********************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1048.04
//
Query:       EHT98615.1  [L=1342]
Description: RNA polymerase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.9e-161  536.2   1.0   6.4e-160  532.5   0.3    2.5  3  RNA_pol_Rpb2_6   RNA polymerase Rpb2, domain 6
    8.6e-58  195.2   0.0    2.1e-57  194.0   0.0    1.7  1  RNA_pol_Rpb2_1   RNA polymerase beta subunit
    4.1e-31  107.0   0.0      9e-31  105.9   0.0    1.6  1  RNA_pol_Rpb2_3   RNA polymerase Rpb2, domain 3
    6.4e-28   97.0   0.1      2e-27   95.4   0.1    1.9  2  RNA_pol_Rpb2_7   RNA polymerase Rpb2, domain 7
    1.4e-26   93.4   1.0    2.7e-16   59.8   0.1    3.2  3  RNA_pol_Rpb2_2   RNA polymerase Rpb2, domain 2
    1.9e-25   88.9   0.1    1.7e-24   85.8   0.1    2.6  2  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai
  ------ inclusion threshold ------
        1.5    7.6   6.9        3.6    6.4   6.9    1.5  1  Spc7             Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1   2.7e+03     138     159 ..     258     290 ..     223     305 .. 0.63
   2 ?    1.3   0.0     0.054   1.4e+02       2      31 ..     665     694 ..     664     700 .. 0.88
   3 !  532.5   0.3  2.5e-163  6.4e-160       1     390 []     717    1264 ..     717    1264 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1
                     -...........-SS-GGGS-TTSB--SS-EEE CS
  RNA_pol_Rpb2_6 138 v...........seealkkLdedGivrvgaevk 159
                     +             +++++L++dGi +++  v+
      EHT98615.1 258 NgtvyvekgrriTARHIRQLEKDGIQHIEVPVE 290
                     233333333333667788888888888877665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.054
                     HHT-SS-TTB-HHHHHHHHHHGGGB-S--- CS
  RNA_pol_Rpb2_6   2 aklapvvehvqspriiiqaamekqalgiys 31 
                     a+l+p+ eh +++r ++ a+m++qa+ + +
      EHT98615.1 665 ASLIPFLEHDDANRALMGANMQRQAVPTLR 694
                     899*********************977655 PP

  == domain 3  score: 532.5 bits;  conditional E-value: 2.5e-163
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S.....---TTTTT---SSEEEESS----SSB-S.TTTTTS.........GGGS-SEEEEEBBBS- CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalg.....iyslnkfkrsnqktyllcinqkPlvktgdkveagqvl.dgpatekgelalGqnavVAvms 87  
                      vak+ ++v++v+++ri+i++++++   g     iy+l+k++rsnq+t   cinq P v+ g+ ve g+vl dgp+t+ gelalGqn+ VA+m+
      EHT98615.1  717 VAKRGGTVQYVDASRIVIKVNEDEMYPGeagidIYNLTKYTRSNQNT---CINQMPCVSLGEPVERGDVLaDGPSTDLGELALGQNMRVAFMP 806 
                      699*****************6666555599999**************...******************************************* PP

                      -TTTTTTT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..--SS-GGGS-TTSB--SS-EEETT-EEE---...B-----... CS
  RNA_pol_Rpb2_6   88 yeGYniEDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnvseealkkLdedGivrvgaevkegdilvgkvt.kgeteltpee 179 
                      ++GYn+ED+i+++er+v++d ft+ihi+e  +  rdtklg+eeit+dipnv+e+al+kLde+Giv++gaev+ gdilvgkvt kget+ltpee
      EHT98615.1  807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTpKGETQLTPEE 899 
                      *****************************9999************************************************************ PP

                      -----------..-B---EE--TT-EEEEEEEEE........................................................... CS
  RNA_pol_Rpb2_6  180 kllraifgekarevkdtslrvksgeegvVdkvkvfsr........................................................ 216 
                      kllraifgeka++vkd+slrv++g++g+V++v+vf+r                                                        
      EHT98615.1  900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRdgvekdkraleieemqlkqakkdlseelqileaglfsriqsvlisggveadkldkl 992 
                      ********************************************************************************************* PP

                      ................................................EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTS CS
  RNA_pol_Rpb2_6  217 ............................................ekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDm 265 
                                                                  ++gd+l++gv k+vkvy+a kR++q GDK+a+rhG+KGv+s+i p eDm
      EHT98615.1  993 prerwlelgltdeakqnqleqlaeqydelkhefekklegkrrkiTQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDM 1085
                      ********************************************************************************************* PP

                      EEETTS---SEEE-GGGCHHH-BTTHHHHHHHHHCCCS......................................................S CS
  RNA_pol_Rpb2_6  266 PfledGivvDivlNPlgvPSRmtigqllEtllgkaaal......................................................e 304 
                      P+ e+G++vDivlNPlgvPSRm+igq+lEt+lg+aa+                                                       +
      EHT98615.1 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGigekinamlkkqeevaklrefiqraydlgtdvrqkvdlntfsddevlrlaenlkK 1178
                      ********************************************************************************************* PP

                      SS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS--CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  305 gkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhlvedKihaRstGpyslltqQPlgGkaq 390 
                      g  ++++vFdgake+eikelLe  gl +sG+ +l+dGrtGe++e++++vG +Y+lkL+hlv+dK+haRstG ysl+tqQPlgGkaq
      EHT98615.1 1179 GMPIATPVFDGAKESEIKELLELGGLPSSGQITLFDGRTGEQFERQVTVGFMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264
                      ************************************************************************************97 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0     8e-61   2.1e-57       1     203 []      26     500 ..      26     500 .. 1.00

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 8e-61
                     CTTHHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHCSSSCEEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEEECCCC.. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekiikeeaaieseeeiqssgeelelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklvvyekd.. 93 
                     +L+s+qldSF+kf+eqd+e++++ eaa++s+++i s+++++el++vs+rlg+Pv+d+          ke+++r++tYsapl+vkl+lv+ye++  
      EHT98615.1  26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIASYSGNSELQYVSYRLGEPVFDV----------KECQIRGVTYSAPLRVKLRLVIYEREap 110
                     699******************************************************..........*************************9** PP

                     ..TCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE............................... CS
                     ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
  RNA_pol_Rpb2_1  94 ..nkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek............................... 155
                       ++++ike+evy+Ge+PlM+++                        G+F+inGte+viv+q++                               
      EHT98615.1 111 egTVKDIKEQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHrspgvffdsdkgkthssgkvlynariipyrg 181
                     ***********************........................************************************************ PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      EHT98615.1 182 swldfefdpkdnlfvridrrrklpasiilralhyttaeildiffekvvyeirdnklqmelvperlrgetatfdiesngtvyvekgrritarhirq 276
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      EHT98615.1 277 lekdgiqhievpveyiagkvvskdyidentgeliiaanmelsldllaklsqaghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmr 371
                     *********************************************************************************************** PP

                     ...................................................................................XHHHHHHHHHHH CS
                     ...................................................................................xxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ...................................................................................laGeLlaslfrv 167
                                                                                                        ++Ge+++++frv
      EHT98615.1 372 pgepptreaaenlfenlffsedrydlsavgrmkfnrsllrdeiegsgilskediievmkklidirngkgevddidhlgnrrirSVGEMAENQFRV 466
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHHHCTSSSSSHHHHSCSHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 168 llkklerdvkerlqksleklddlmlqllvnakpita 203
                     +l+++er+vkerl  sl++ld+lm+q+++nakpi+a
      EHT98615.1 467 GLVRVERAVKERL--SLGDLDTLMPQDMINAKPISA 500
                     *************..*******************85 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   3.5e-34     9e-31       1      67 [.     513     580 ..     513     581 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 3.5e-34
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvssl.rgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallar 67 
                     q++d+ nplse++h+rr+s+l +ggl++er+++evRd+hp+h+Gr+Cp+eTPEG+n+Gl++sL+++a+
      EHT98615.1 513 QFMDQNNPLSEITHKRRISALgPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580
                     89****************************************************************97 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.7   1.2e+04      18      42 ..     380     404 ..     380     413 .. 0.84
   2 !   95.4   0.1     8e-31     2e-27       1      85 [.    1266    1340 ..    1266    1342 .] 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.7
                     BHHHHHHHHTTTTTEEEEEEESSSS CS
  RNA_pol_Rpb2_7  18 aaalLkerltikSDavevdvcgrck 42 
                     aa++L e l+ + D++++   gr+k
      EHT98615.1 380 AAENLFENLFFSEDRYDLSAVGRMK 404
                     79999*********99888777765 PP

  == domain 2  score: 95.4 bits;  conditional E-value: 8e-31
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEEEBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEE CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaaneCkivkseekiekveipeafklLlqeLqslgialkll 85  
                      GG+rfGEME++al+ayGaa++L+e+lt+kSD    dv+gr+k++++     iv++++++e++ +pe+f++Ll+e++slgi+++l+
      EHT98615.1 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKN-----IVDGNHQMEPG-MPESFNVLLKEIRSLGINIELE 1340
                      9******************************....***********.....***********.*******************987 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     2e-10   5.2e-07       1      88 [.     151     243 ..     151     283 .. 0.80
   2 !   59.8   0.1     1e-19   2.7e-16      80     190 .]     340     454 ..     328     454 .. 0.88
   3 ?    0.7   0.0      0.14   3.6e+02     106     145 ..    1124    1161 ..    1116    1173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2e-10
                     -TSCEEEEE-SSSSSE..SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHH....HHTSSSTTHHHHHHHHH CS
  RNA_pol_Rpb2_2   1 rsngiyvekekdknki..satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIle....ricydsedsqlleelle 88 
                     rs+g+ + ++k k+    +  + + +i +rgs+l +e d k+ +++ri+++rk p+ i+l+Al   +  eIl+    +++y+  d +l+ el +
      EHT98615.1 151 RSPGVFFDSDKGKTHSsgKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALHY-TTAEILDiffeKVVYEIRDNKLQMELVP 243
                     6888888888777766556689999***************************************7.5599986222255565555555555554 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 1e-19
                     HHHHHHHHHHHHHHCTSSSCHHHHHHHHHCSSTTSSSCCCCCHHHHHHH......CHHHHHHHTTTTSSTTTTTSSSTCHH...HHHHHHHHHHH CS
  RNA_pol_Rpb2_2  80 sqlleelleeleekeeiqtqeealdyigkvvalrrgeearlqsareilq......krydlgeigreklnkhlglseslenkr.lkaqdilymidr 167
                     + ++  +  e+ +     ++  al +i++   +r+ge+++ + a+++++      +rydl  +gr k+n+ l  +e  e    l  +di +  ++
      EHT98615.1 340 DLDHGPYISETLRVDPTNDRLSALVEIYR--MMRPGEPPTREAAENLFEnlffseDRYDLSAVGRMKFNRSLLRDEI-EGSGiLSKEDIIEVMKK 431
                     5555566666677777788999******9..***************************************9*99999.55555************ PP

                     HHHHHTTSSSS--TTSGGGEEEE CS
  RNA_pol_Rpb2_2 168 LlslklgrrevDDiDhlgnkRvr 190
                     L+ ++ g++evDDiDhlgn+R+r
      EHT98615.1 432 LIDIRNGKGEVDDIDHLGNRRIR 454
                     *********************97 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.14
                      HHHCSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTT CS
  RNA_pol_Rpb2_2  106 igkvvalrrgeearlqsareilqkrydlgeigreklnkhl 145 
                      ig+++ +  ++++++ + re++q+ ydlg   r+k+   l
      EHT98615.1 1124 IGEKINAMLKKQEEVAKLREFIQRAYDLGTDVRQKVD--L 1161
                      78888888999************99****87777765..4 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   6.7e-28   1.7e-24       1      65 []     591     656 ..     591     656 .. 0.98
   2 ?   -1.2   0.0      0.98   2.5e+03      36      56 ..    1236    1256 ..    1233    1258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 6.7e-28
                      EEEEE.TEEEEEEEEEEHHHHTTSEEE-SSS-BETTSCBSSSEEEEECSSCEEEEEGGG-SEEESS CS
  RNA_pol_Rpb2_45   1 YrkVe.gkvtdevvYLtAdeEekyviAqAnapldeegrfveerVlaRrkgevelvepeeVdymDVS 65 
                      Yr+   g+v+de++YL+A eE +yviAqAn++l eeg fv++ V++R kge  l+++++VdymDVS
       EHT98615.1 591 YRRLIdGVVSDEIHYLSAIEEGNYVIAQANTNLSEEGAFVDDLVTCRSKGESSLFSRDQVDYMDVS 656
                      899988***********************************************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.98
                       SCBSSSEEEEECSSCEEEEEG CS
  RNA_pol_Rpb2_45   36 grfveerVlaRrkgevelvep 56  
                       +++v+++ +aR  g + lv++
       EHT98615.1 1236 NHLVDDKMHARSTGSYSLVTQ 1256
                       6899********9*9999986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.9    0.0014       3.6     149     239 ..     937    1028 ..     932    1043 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0014
        Spc7  149 egleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeel.reelaelkaeieekkkelaelqeqleeleekieel 239 
                  +g+e+dk+ Le +e +l++++++l+ee + le+ l +  + +     ++ ++L +l re+  el  + e+k+++l++l eq +el+ ++e+ 
  EHT98615.1  937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIQSVLISGGVEADKLDKLpRERWLELGLTDEAKQNQLEQLAEQYDELKHEFEKK 1028
                  6899*******************************999999999999********9899***************************999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 8623.79
//
Query:       EHT98616.1  [L=1407]
Description: RNA polymerase, beta prime subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-90  302.8   0.0    4.6e-90  302.1   0.0    1.3  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
    1.6e-78  263.8   0.1    2.7e-78  263.1   0.1    1.3  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
    1.2e-37  129.7   0.1    3.6e-27   95.6   0.0    2.8  3  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    3.4e-26   92.0   0.0    8.7e-26   90.7   0.0    1.8  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    5.5e-19   68.1   0.2    1.4e-18   66.8   0.2    1.7  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
  ------ inclusion threshold ------
      0.094   12.8   0.1        4.9    7.2   0.0    2.7  2  Apocytochr_F_C  Apocytochrome F, C-terminal


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.1   0.0   1.5e-93   4.6e-90       2     312 .]      15     342 ..      14     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 302.1 bits;  conditional E-value: 1.5e-93
                     E---EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTT.........T---..........--EEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxx..........xxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkk.........eCeg..........hfGhieLa 77 
                     +++++i++ +asp+ ir+wS++ev+k+eti++++ kPe+ Gl++ r++++ kd+eC +Cgk+k          +C +          ++GhieLa
      EHT98616.1  15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC-LCGKYKRlkhrgviceKCGVevtqtkvrreRMGHIELA 108
                     67899***************************************************.******999*9**9998888999*************** PP

                     CEEE-HHHHHH...........HHHHCTTCETTTTEBSS-TT.....SH....HHHHHHCSSSCC......CCHHHHHHHHCCS-BE-SSSSB-E CS
                     xxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1  78 kPvfhigffkl...........ilkilecvckecskllldee.....kkkllsklkkrekleelk......krlkaieelckkinlcekCgavqp 150
                     +P +hi+f+k+            l+++e+v++++s+++++ +     k+++l+++++ ++lee+       ++++ai++l+k+++l         
      EHT98616.1 109 SPTAHIWFLKSlpsrigllldmPLRDIERVLYFESYVVIEGGmtnleKRQILTEEQYLDALEEFGdefdakMGAEAIQALLKNMDL--------- 194
                     *********************99*****************9999999999**************9999999***************......... PP

                     EEEEETTEEEEEESSSSTSCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECCCCHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 151 kleeegeklkaalkkskeeekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDlteklrdiikrN 245
                       e+e+e+l+++l+ +++       ++k kkl kri+     ++ f +sg++Pew+iltvlPV+Pp++RP+v ldggr++++Dl++++r++i+rN
      EHT98616.1 195 --EQECEQLREELNATNS-------ETKRKKLTKRIK----LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276
                     ..99999*******9999.......8999********....****************************************************** PP

                     HHHHHHHHSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 246 nrLkkaeeegapeliieeekelLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                     nrLk+ ++  ap++i+++ek++LQe+v++l+dn  +g + +t ++krplksl +++kGK+GrfR+nL
      EHT98616.1 277 NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNL 342
                     *************************************.999*************************9 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.1   0.1   8.9e-82   2.7e-78       1     265 [.     766    1315 ..     766    1317 .. 0.96

  Alignments for each domain:
  == domain 1  score: 263.1 bits;  conditional E-value: 8.9e-82
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+v ++f++t+g+R+GL+DtA+kTa+sGYl+Rrlv++++d+vv++dd+++++g+ ++++++g+d+                           
      EHT98616.1  766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVkeplrervlgrvtaedvlkpgtadilv 858 
                      9******************************************************************************************** PP

                      .................................................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSS.... CS
                      .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  RNA_pol_Rpb1_5   67 .................................................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtl.... 106 
                                                                       +++ Gea+G+iaaQSiGePgTQlt++TFH++G+as+++++    
      EHT98616.1  859 prntlldehwcdvlelnsvdsvkvrsvvgcetdfgvcahcygrdlarghIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAEssiq 951 
                      **************************************************************************************9998888 PP

                      ....SHHHHHHH.....HTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE........................................ CS
                      ....xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  RNA_pol_Rpb1_5  107 ....Gvprlkei.....lnvskniksksltvllvdeeakelekakkvkkaiek........................................ 150 
                          G+++l++        ++ +i s++++++++de  + +e++k +++a+                                          
      EHT98616.1  952 vknkGTIKLTNAksvtnSAGKLVITSRNVELKMIDEFGRTKESYKVPYGATMAkgdgeqvaagetvanwdphtmpvitevggfirftdmidgq 1044
                      88888888888888876667899*************************999999*************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      EHT98616.1 1045 titrqtddltglsslvvldsaertsggkdlrpalkivdangndvlipgtdmpaqyflpgkaivqledgvkissgdtlarvpqesggtkditgg 1137
                      ********************************************************************************************* PP

                      ..............................CBTTEEEEEEEEEEEEEEETEEEEEEECS--HHHHTTSTT..TBETTTEEES...SHHHHHHH CS
                      ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx...xxxxxxxx RF
  RNA_pol_Rpb1_5  151 ..............................gikkikrilvkeaekgkeeekelvletegvnlsevlkvee..vvdageilsn...diaeilei 208 
                                                    ++k+++r++++  + ++++ +e+      ++++++l+v e   v+ g+++s+   ++++il++
      EHT98616.1 1138 lprvadlfearrpkepailaeisgiisfgkETKGKRRLVITPLDGSDPY-EEM------IPKWRQLNVFEgeRVERGDVVSDgpeSPHDILRL 1223
                      *****************************999*********99999999.788......89999999988889******************** PP

                      HCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTT...................................CHCCSSSH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxx RF
  RNA_pol_Rpb1_5  209 lgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrs...................................Ginkaels 265 
                       g++a+ +++++e+qevy+ qgv++nd+H+e+iv+qm++k +i++ + +                                   Gi+ka+l+
      EHT98616.1 1224 RGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQMLRKATIMSAGSTeflegeqaefsrikisnreleangkvgatfvrdllGITKASLA 1315
                      **********************************************9998888888888888888888888888888888888888888765 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.6e-11   1.1e-07       1      52 [.     344     395 ..     344     401 .. 0.87
   2 !   95.6   0.0   1.2e-30   3.6e-27      71     165 ..     391     485 ..     385     486 .. 0.91
   3 ?   -3.6   0.1       3.8   1.1e+04      73     104 ..     692     720 ..     636     721 .. 0.49

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.6e-11
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHH CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklve 52 
                     Gkrvdys+Rsvi+++p l+l++ g+P+++a  l+ p i  +l  + l+++++
      EHT98616.1 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLSTTIK 395
                     9**********************************99888877777766655 PP

  == domain 2  score: 95.6 bits;  conditional E-value: 1.2e-30
                     EEETTTT-SCHHCCTTTTSEEEEE--TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSB CS
  RNA_pol_Rpb1_2  71 ekklkakkrklakelekgdiverhvkdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelll 165
                     ++++ka k+ +++e ++ + +  +v+ +  vllNR+P+Lh+l+i+a++  ++e+k+++l+ +v++ayNaDFDGD+m++h+p + ea+ Ea++l++
      EHT98616.1 391 STTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485
                     5667777776666666778899999********************************************************************97 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.8
                     ETTTT-SCHHCCTTTTSEEEEE--TTSEEEEE CS
  RNA_pol_Rpb1_2  73 klkakkrklakelekgdiverhvkdgdvvllN 104
                     +     +++ ++l+++++++r+ ++++ v +N
      EHT98616.1 692 R---VAKAMMENLSTETVINRDGEEEKQVSFN 720
                     2...2223566777777777777777777666 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   2.9e-29   8.7e-26       1     157 []     489     644 ..     489     644 .. 0.93

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 2.9e-29
                     CSEETTTTEESSS--THHHHHHHHHSSTT........EEEEHHHHHHHHHHSSSCCSSSSSSSSSBESS.SE............BEEHHHHHHCC CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTked........vfidreeaqqllykgvgsdsktvtlrpailkp.ke............lwtgkqtfsri 74 
                     nilsp++g+P+i+++QD++lG+y++T+++        v++ ++ea+++++ g       ++l+++++++ +e               +++t++r 
      EHT98616.1 489 NILSPANGEPIIVPSQDVVLGLYYMTRDKvnakgegmVLTGPKEAERVYRAG------LAELHARVKVRiTEyskneqdefvakTSLIDTTIGRS 577
                     9***************************************************......899********88899999999999988999999999 PP

                     CHCCCCEEEESSSSSTSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  75 lpneinyerkneekdgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                     + + i++++   +    + i n+ l          gkk+++++++++++ +g+k tv f d+ +++gf+y+ +sg ++gi+D+
      EHT98616.1 578 ILWIIVPKG--LP----FSIVNQAL----------GKKAISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDM 644
                     999999999..44....45666666..........8**********************************************8 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.2   4.6e-22   1.4e-18       2     107 ..     674     763 ..     673     764 .. 0.83

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 4.6e-22
                     HHHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSS CS
  RNA_pol_Rpb1_4   2 eeaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfk 96 
                     ++ ery+k++d++  ++e++++a++++++ +   + ++  ++++ + Nsi++M++sGa+Gs+ +i+q+ag++G+++++              +++
      EHT98616.1 674 TAGERYNKVIDIWAAANERVAKAMMENLSTETVIN-RDGEEEKQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKP--------------DGS 753
                     7889************************9976655.44444444445******************************9..............445 PP

                     SSESSTTTSSE CS
  RNA_pol_Rpb1_4  97 kidespesrGF 107
                      i+e+p++ +F
      EHT98616.1 754 -IIETPITANF 763
                     .6666666666 PP

>> Apocytochr_F_C  Apocytochrome F, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.058   1.7e+02      24      64 ..     980    1022 ..     948    1048 .. 0.73
   2 ?    7.2   0.0    0.0016       4.9      11      64 ..    1161    1214 ..    1154    1216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.058
                      EEEEEETSTSEEE.-EEEESSS-BS--ST-EE-TT-BSC-.-- CS
  Apocytochr_F_C   24 tevtietedgeav.vetipaGpelivsegqevkagealtn.dP 64  
                       e+++ +e g++  + ++p G+++   +g++v+age+++n dP
      EHT98616.1  980 VELKMIDEFGRTKeSYKVPYGATMAKGDGEQVAAGETVANwDP 1022
                      44455556666553679*******************9987455 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0016
                      EEEEEEEEEESSEEEEEEETSTSEE.E-EEEESSS-BS--ST-EE-TT-BSC--- CS
  Apocytochr_F_C   11 Gtiskiekeekggtevtietedgea.vvetipaGpelivsegqevkagealtndP 64  
                      G   +  ke+kg+ ++ i+  dg+   +e ip+  +l v eg++v+ g+ +++ P
      EHT98616.1 1161 GI-ISFGKETKGKRRLVITPLDGSDpYEEMIPKWRQLNVFEGERVERGDVVSDGP 1214
                      43.345678889999999999987616899********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 8746.69
//
Query:       EHT98617.1  [L=61]
Description: hypothetical protein CKS_0013 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-13   48.1   1.3    8.2e-13   47.8   1.3    1.1  1  DUF1127   Domain of unknown function (DUF1127)


Domain annotation for each model (and alignments):
>> DUF1127  Domain of unknown function (DUF1127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   1.3   4.6e-17   8.2e-13       1      36 [.      22      57 ..      22      58 .. 0.98

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 4.6e-17
     DUF1127  1 llaalrrWrrrRrtrreLarLsDreLaDIGlsRsdi 36
                +++++rrW+ rR+tr  L rLsD  L+DIGl Rsdi
  EHT98617.1 22 IWHHFRRWQCRRETRMILCRLSDSALKDIGLKRSDI 57
                699********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 461.14
//
Query:       EHT98618.1  [L=512]
Description: GntR family transcriptional regulator, MocR subfamily [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-38  131.4   0.0    6.1e-38  130.9   0.0    1.1  1  Aminotran_1_2   Aminotransferase class I and II
    3.2e-14   52.3   2.2    5.4e-14   51.6   0.2    2.5  3  GntR            Bacterial regulatory proteins, gntR family
    1.2e-05   24.9   0.0    2.5e-05   23.8   0.0    1.5  1  HTH_41          Helix-turn-helix domain
      0.007   15.2   0.0      0.013   14.3   0.0    1.4  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   1.4e-41   6.1e-38       2     360 ..     105     458 ..     104     459 .. 0.88

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 1.4e-41
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke.galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdei 96 
                    dv+ Lgs+ ++  ++  tl+  +ka  +   ++ +tl +y +  g + l+e++a+++  + + +l+ e  +v ++G+++++++  ++  ++pgd i
     EHT98618.1 105 DVLQLGSGMPDLTQS--TLKPLWKAFSRqAQQQESTLLNYDNLYGVARLREQIARLMI-DSGCQLTSE-DIVITTGCHEALSVSVRAV-CQPGDII 195
                    7899*****999855..55555666666556999************************.99*******.99*****************.8****** PP

                    EEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTT CS
  Aminotran_1_2  97 lvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                     v +p++  + + lr  g+  +++p++     ++ leale a ++ p     + v++v +++NP G +++++  ++ll+l+++  + ++ D++Y++
     EHT98618.1 196 AVESPSFHGIMQTLRGFGIRAIEIPTD--SVTGISLEALELAFDQWP----IKAVVVVPNCNNPLGFIMPEKRKRALLSLVQRFDAAIIEDDVYGE 285
                    *************************66..7779***********987....4567***************************************** PP

                    CBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 193 fvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrk 286
                    ++++ +++ + +  +++e  +l+++s+sK + ++G+RvG+++   ++++ +  ++  ++    ++ q+ava  ++  + +q +l  mrq +q++ +
     EHT98618.1 286 LAWEYPRPSS-IKSLDTEGRVLLCSSFSKTL-APGLRVGWVAP-GRFRDRVLHMKYIVTGstATQPQHAVADFIQQGH-YQTHLRRMRQVYQRNYD 377
                    ****888777.999999999**********9.5*******975.4555555555555555224444556666666555.788************** PP

                    HHHHHHHHS...TEEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHH CS
  Aminotran_1_2 287 elrdeLael...glkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelv 360
                    ++    ++    g+ v+ +q+g++++ +l+++ +a +l  +L++  g+ +  g+ f +    +++lR+++A  +++++e+++
     EHT98618.1 378 TFSCWVRHYfpcGICVTRPQGGFLMWIELPEAfDAVQLNHELRKS-GIQIAVGSLFSAsgkyRNCLRLNYALPSSSKIEQAL 458
                    **9999888999********************99***********.*******************************99987 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.2   1.2e-17   5.4e-14       2      64 .]       4      66 ..       3      66 .. 0.98
   2 ?   -2.1   0.0       0.7   3.1e+03       7      26 ..     149     167 ..     148     173 .. 0.76
   3 ?   -2.5   0.0      0.94   4.2e+03      21      45 ..     445     469 ..     441     471 .. 0.77

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.2e-17
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y++++  L+ +I +g ++ G++LPs+r+L+ e gVs +tv++A+  Le+++l++++ ++G fV
  EHT98618.1  4 YQHLATLLEKRIEQGLYQSGERLPSVRSLSVEHGVSISTVQQAYYLLEQKQLIIAQARSGYFV 66
                8999*********************************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.7
                 HHHHHHHHTTSS-TTSB--- CS
        GntR   7 erLredIlsgelrpGdkLPs 26 
                 +rLre+I +  +  G +L +
  EHT98618.1 149 ARLREQIARLMIDSGCQL-T 167
                 789999999888888877.5 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.94
                 TSB---HHHHHHHHTS-HHHHHHHH CS
        GntR  21 GdkLPsereLaaefgVsrttvReAL 45 
                 + +LPs +++ ++++ +   v +A+
  EHT98618.1 445 NYALPSSSKIEQALALTGKAVERAM 469
                 5679999999999988887777776 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.6e-09   2.5e-05       2      41 ..      22      61 ..      21      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.6e-09
      HTH_41  2 vGdRlktIeelakeleLSvGlvQkALklLeddkaislerr 41
                 G+Rl+++ +l+ e ++S  +vQ+A  lLe+++ i  ++r
  EHT98618.1 22 SGERLPSVRSLSVEHGVSISTVQQAYYLLEQKQLIIAQAR 61
                6********************************9977665 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     3e-06     0.013     126     411 ..     194     467 ..     151     475 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-06
                     EEEEEES--HHHHHHHHHHT-EEEEEEEET.TEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS- CS
  Aminotran_MocR 126 kllvtvpGydrhfllleelGielltvdlqd.dGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavh 219
                      + v +p +   +  l+ +Gi+ + ++ ++  G  ++a+ +l+ ++  +k +++vp+  np G ++ e++ r l +l     d  i  dd y   
      EHT98618.1 194 IIAVESPSFHGIMQTLRGFGIRAIEIPTDSvTGISLEAL-ELAFDQWPIKAVVVVPNCNNPLGFIMPEKRKRALLSLVQ-RFDAAIIEDDVYG-- 284
                     555677777666666677777777777665246666666.48888999****************************975.5799********7.. PP

                     BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-H..HHHHHHHHHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHH CS
  Aminotran_MocR 220 dlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvasse..dniawlkkylGlqsiGpdkveqlrhvkflkdyeGlealmrdhael 312
                     +l  e ++ + i +l  +     r ++ +s sk    G  v+ va     d +    ky+     G    +    v  + +    ++++r+ +++
      EHT98618.1 285 ELAWEYPRPSSIKSLDTE----GRVLLCSSFSKTLAPGLRVGWVAPGRfrDRVL-HMKYIV---TGSTATQPQHAVADFIQQGHYQTHLRRMRQV 371
                     677799999988777655....59999999999999999999998764113332.234543...3333333333355555555667777777777 PP

                     HHHHHHHHHHHHHHHHTTTSSEEE---SBSS-EEEEESSS-HHHHHHHHH...HCTEE---TTTTSSTT--SSS-EEEE--SSS-HHHHHHHHHH CS
  Aminotran_MocR 313 iapkfeavlevleaelggaevatwteprGGyfisldtldgvakrvvklae...eaGvsltaaGatypaGedpkdrnirlaptlppleevetamdv 404
                      +  +++    +++ + ++   + t p+GG+++ ++  +  a   v+l +   ++G+++ a G+ + a    ++  +rl  +lp+  ++e+a+  
      EHT98618.1 372 YQRNYDTFSCWVRHYFPCGI--CVTRPQGGFLMWIELPE--AFDAVQLNHelrKSGIQI-AVGSLFSASGKYRN-CLRLNYALPSSSKIEQALAL 460
                     77777777776666666554..45789999999888755..455666654122689987.57888877665555.58999999999999999877 PP

                     HHHHHHH CS
  Aminotran_MocR 405 vatcvkl 411
                         v+ 
      EHT98618.1 461 TGKAVER 467
                     6666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4078.27
//
Query:       EHT98619.1  [L=210]
Description: thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-55  187.4   0.1    1.8e-55  187.1   0.1    1.0  1  TMP-TENI   Thiamine monophosphate synthase
    0.00076   19.3   0.0     0.0011   18.8   0.0    1.2  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal


Domain annotation for each model (and alignments):
>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.1     2e-59   1.8e-55       6     181 .]      18     187 ..      13     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 2e-59
    TMP-TENI   6 dskldkneellevveealkggvtlvqlRekeldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellgpdliiGlSvh 104
                 d         +e++e++l++gv+++qlR k+l ++ +   + ++ a  ++y+++l+ind+++la++++a+gvHlgq+dl+va ++++l+++l +G+S+h
  EHT98619.1  18 D--------SVEWIERLLDAGVRTIQLRIKDLPDEIVEPTIIQAIATGQRYQARLFINDYWQLAIKHKAYGVHLGQEDLAVANVQRILDAGLRLGISTH 108
                 3........79**************************************************************************************** PP

    TMP-TENI 105 sleeaeeaealgadYigvGpifpTdtKkda.eplgleglkelaeale.iPvvaiGGitlenvaevleagadgvavvsai 181
                 +++e+ +a al ++Yi++G+ifpT+tK ++ +p+gl+ lk++ ++l+ i +vaiGGi+ ++v++vle+g+ ++avvsai
  EHT98619.1 109 DDAELDRALALRPSYIALGHIFPTQTKVMPsSPQGLSELKRHLSRLQgISTVAIGGISIDRVPAVLETGVGSIAVVSAI 187
                 ******************************************************************************8 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-07    0.0011      60     161 ..      80     190 ..      46     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-07
                 HHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHT-SEEEEES-..........-HHHHHHHHHHHHHHSTT...SEEEEESS--TTTHHHHH CS
   QRPTase_C  60 iaaagsiveavksvreavdkevkievevesleeleevleaeadiimLDnf..........sveelkkaveelkeknkr...vlievSGgvtlenveeya 145
                  +++g+   av +v+  +d  +++ + ++ ++el+++l+ +++ i L  +          s++ l +    l     r   + + + Gg++ + v ++ 
  EHT98619.1  80 GVHLGQEDLAVANVQRILDAGLRLGISTHDDAELDRALALRPSYIALGHIfptqtkvmpsSPQGLSELKRHL----SRlqgISTVAIGGISIDRVPAVL 174
                 4567778889****************************************5555554444333333333333....3355599**************** PP

                 CTT-SEEEECHHCHTB CS
   QRPTase_C 146 ksgvdvisvgalthsv 161
                 ++gv  i+v ++++++
  EHT98619.1 175 ETGVGSIAVVSAITQA 190
                 *******998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1575.34
//
Query:       EHT98620.1  [L=640]
Description: thiamin (pyrimidine moiety) biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.9e-199  660.5   0.0   1.2e-198  660.1   0.0    1.2  1  ThiC_Rad_SAM     Radical SAM ThiC family
    1.1e-32  111.7   0.1    2.7e-32  110.4   0.1    1.8  1  ThiC-associated  ThiC-associated domain


Domain annotation for each model (and alignments):
>> ThiC_Rad_SAM  Radical SAM ThiC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  660.1   0.0  1.3e-202  1.2e-198       1     418 []     149     597 ..     149     597 .. 0.99

  Alignments for each domain:
  == domain 1  score: 660.1 bits;  conditional E-value: 1.3e-202
  ThiC_Rad_SAM   1 tqleaarkgiiteemeevaeken...........................vepefvreevaeGrivipanknhkek.pvaiGkglrtkvnaniGtsa 69 
                   tql++ar+giit+eme++a +en                           ++pefvr+eva+Gr++ipan+nh+e+ p++iG+++ +kvnaniG+sa
    EHT98620.1 149 TQLHYARRGIITPEMEFIAIRENmgrerlrgevllqqhpghsfgahlpenITPEFVRQEVAAGRAIIPANINHPESePMIIGRNFLVKVNANIGNSA 245
                   89***********************************************************************7777******************** PP

  ThiC_Rad_SAM  70 dasdieeEveKlkvalkagadtvmdLstggdideirekileespvpvgtvpiYqaleekekkveelteeellevieeqaedGvdfltiHagvtlell 166
                    +s+ieeEveKl +++++gadtvmdLstg+ i+e+re+il++spvp+gtvpiYqale++++ +e+l+++ +++++ eqae+Gvd++tiHagv l+++
    EHT98620.1 246 VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQALEKVNGVAENLNWDIFRDTLLEQAEQGVDYFTIHAGVLLRYV 342
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 167 ellkkekRltgivSrgGsllaawmlanekenplyeefdelleilkeydvtlSlgdglRpGsiaDatdeaqlaelivlgelvkrareagvqvmveGPG 263
                   ++++  kRltgivSrgGs++a+w+l+++ke++lye+f +++ei+++yd++lSlgdglRpGsi+Da+deaq+ael++lgel+k a+e +vqvm+eGPG
    EHT98620.1 343 PMTA--KRLTGIVSRGGSIMAKWCLSHHKESFLYEHFRDICEICAAYDIALSLGDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPG 437
                   ***9..******************************************************************************************* PP

  ThiC_Rad_SAM 264 HvpldeieanvklqkklckeaPfyvlGplvtDiapgYDhitsaiGaalaaaaGadllCyvtpaEHlglPdeedvkeGviaakiaahaadlakglkka 360
                   H+p++ i+ n++ q + c+eaPfy+lGpl+tDiapgYDh ts iGaa++++ G+++lCyvtp+EHlglP++edvk+G+i++kiaahaadlakg+++a
    EHT98620.1 438 HIPMQMIRRNMTEQLEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGA 534
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 361 rerdkalskaRkeldwekqfelaldpekareireeklpe....eeeaCsmCgek.Cavkivee 418
                   + rd+a+skaR+e++we+qf+laldp++ar++++e+lp+     +++CsmCg+k C++ki++e
    EHT98620.1 535 QIRDNAMSKARFEFRWEDQFNLALDPHTARAYHDETLPQesgkVAHFCSMCGPKfCSMKITQE 597
                   *************************************99788789********99*****985 PP

>> ThiC-associated  ThiC-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.1     3e-36   2.7e-32       2      81 .]      28     109 ..      27     109 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 3e-36
                      -TT-EEEEEE-SSTT-EEEEEEE---GG...........G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS-EE CS
  ThiC-associated   2 fpnsrkvyvegsrpdirVpmreiklsptvlketkeke..eenepvrvYDtSGpYtdpeveidvrkGLprlReaWieergdve 81 
                      fpns++++++gsr+dirVpmrei+lspt++  +k+++  +enepv+vYDt+G+Y+dp+++idv++GL +lR++Wieer+d e
       EHT98620.1  28 FPNSKRIWLTGSRDDIRVPMREIQLSPTLTGGSKDEPvyQENEPVPVYDTAGAYGDPAAKIDVHRGLDKLRARWIEERDDSE 109
                      9***************************999997666679****************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 5133.18
//
Query:       EHT98621.1  [L=149]
Description: regulator of sigma D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-48  164.1   0.1    2.5e-48  163.9   0.1    1.0  1  Rsd_AlgQ  Regulator of RNA polymerase sigma(70) subunit, Rsd/
  ------ inclusion threshold ------
        0.1   10.6   0.0       0.12   10.4   0.0    1.0  1  FragX_IP  Cytoplasmic Fragile-X interacting family


Domain annotation for each model (and alignments):
>> Rsd_AlgQ  Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.1   2.8e-52   2.5e-48       1     143 [.       1     142 [.       1     147 [. 0.98

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 2.8e-52
    Rsd_AlgQ   1 mleklekakerwggvselidrwLeeRqqllvaycklaglkpkkeekelpseealqefcqlLvDYvSaGhFevYeqlveeaeefgdkelelakelypkie 99 
                 ml++l+ +++r+gg++el+d+wL++R+qllv+y++l+g+kpkke+ ++ +e+al++fc++LvDY+S+GhF++Y++l++e++ ++   l +a+++yp++e
  EHT98621.1   1 MLNQLDVLTQRVGGSNELVDSWLAARRQLLVSYYHLVGIKPKKEALTRLDEQALDNFCHTLVDYLSSGHFSLYQRLIAEMDGTSP--LLAAAQIYPSLE 97 
                 9****************************************************************************99998887..9*********** PP

    Rsd_AlgQ 100 atTeaaldfndkyee.aadedeleeldedLsklgeaLeeRfelED 143
                 a+Te++++++d + + a+d+d++ +++++Ls++geaLe+Rf+lE 
  EHT98621.1  98 ANTEQLMQLYDGHLQqAIDDDNYVTFQHALSEVGEALEARFTLES 142
                 ************9998***************************96 PP

>> FragX_IP  Cytoplasmic Fragile-X interacting family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.4e-05      0.12     509     619 ..      26     138 ..      14     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.4e-05
    FragX_IP 509 yeailelysgfigvehfkaivrllgyqgiavlieellkivksllqqtlkeyvrrlaelmP...ksiklppldygsegvldlfeaqlkdilqypelktev 604
                  +++l  y + +g++  k+ +  l++q++   ++ l+++++s   +  ++ + ++  + P        p+l++++e+ ++l+ ++l++ +++ +    +
  EHT98621.1  26 RRQLLVSYYHLVGIKPKKEALTRLDEQALDNFCHTLVDYLSSGHFSLYQRLIAEMDGTSPllaAAQIYPSLEANTEQLMQLYDGHLQQAIDDDNYV-TF 123
                 5667788999999999999999999999999999999999987776777777766654441115667899********************999977.89 PP

    FragX_IP 605 lqlfrelGnilifal 619
                  +++ e+G++l    
  EHT98621.1 124 QHALSEVGEALEARF 138
                 99*******986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1089.48
//
Query:       EHT98622.1  [L=256]
Description: NADH pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-16   58.6   0.0    1.1e-15   57.8   0.0    1.3  1  NUDIX          NUDIX domain
    1.7e-07   30.7  11.8    3.6e-07   29.7  11.8    1.6  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.3e-19   1.1e-15       7     116 ..     132     234 ..     126     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.3e-19
                 EEEEEETTSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSSTSTTT CS
       NUDIX   7 gvvllnekgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegelepndene 103
                 +v +++++ e+Ll+ ++ ++ ++ +++ +G+ve gEt+e+A++RE+ EE +++++++++++         +p++ + ++++ f  e + g+l+++  +e
  EHT98622.1 132 IVAIRRGD-EILLANHA-RHRNNiYTVLAGFVEVGETIEQAVAREVMEESNVRVKNVRYVT--------SQPWPFPQSLMMAFMaEYDGGDLQHD-GKE 219
                 34466666.7*******.99999889***********************************........45677766666666648888888887.*** PP

                 EEEEEEEEHHHH..H CS
       NUDIX 104 vsevrwvpleel..l 116
                 + ++ w+++++l  l
  EHT98622.1 220 LLDAGWFRFDALplL 234
                 ***********9532 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7  11.8     4e-11   3.6e-07       1      32 []      93     124 ..      93     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4e-11
  zf-NADH-PPase   1 rthrFCgrCGaptepaeggwarvCpaCglehY 32 
                    r+hr+Cg CG++++ ++ ++a+ C++C++++Y
     EHT98622.1  93 RSHRWCGYCGHEMHASKREFACLCSHCRERYY 124
                    89*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1964.26
//
Query:       EHT98623.1  [L=356]
Description: uroporphyrinogen decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-142  473.7   0.0   3.9e-142  473.5   0.0    1.0  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.5   0.0  2.2e-146  3.9e-142       2     345 ..       5     347 ..       4     348 .. 0.98

  Alignments for each domain:
  == domain 1  score: 473.5 bits;  conditional E-value: 2.2e-146
                 ---HHHHHHTT---SS--B--TT-SSTTSHHHHHHHT.SSSHHHHHH-HHHHHHHHHHHHHHH--S-EE-S--TTGGGGGGT-EEEEETTTEEEEE--S CS
       URO-D   2 knerllralrgekvdrvPvwlmRqaGrylpeyraera.gvsflelcknpelaaevtlqpvrrfglDaailfsdilveaealGlevefeegegPvvekpv 99 
                 kn+r+lr+l +++vd +Pvw+mRqaGrylpey a+ra +++f+ lckn+ela+evtlqp+rr++lDaailfsdil++++a+Gl + fe+gegP + +pv
  EHT98623.1   5 KNDRYLRTLLRQPVDVTPVWMMRQAGRYLPEYKATRAqAGDFMSLCKNAELACEVTLQPLRRYKLDAAILFSDILTIPDAMGLVLYFETGEGPCFSNPV 103
                 89************************************************************************************************* PP

                 -....GGGS----GGG.G..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT CS
       URO-D 100 rtaedveklevpddveegrlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqieag 197
                 + ++dv++l+vpd++  ++l+yv++a++ ++k l+gevpligf+g+P+tla+y+veGg sk f+k++k++y++p+++h++ldkl+d+vi yl+aqi+ag
  EHT98623.1 104 TCRADVDRLPVPDPE--QELGYVMNAVRTIRKNLNGEVPLIGFSGSPWTLATYMVEGGsSKAFTKIKKMMYAEPATLHAMLDKLADSVILYLNAQIRAG 200
                 *************95..58******************************************************************************** PP

                 -SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHH.H-..-S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHHSS....EEE--B-G.GGG CS
       URO-D 198 AdaiqifDswagllspedfeefvlpylkrivdevkaegp..kvpvilfikgagaeiledlaelgadvlsldwtvdlkeaarevgdkvalqGnldPialL 294
                 A+ +++fD+w+g+ls +d++ef+l y+ +ivd v +e++  +vp++lf+kg g ++le++ae+g+d+l+ldwt+d+ ea+r+vg+kvalqGn+dP ++L
  EHT98623.1 201 AQSVMVFDTWGGALSGRDYREFSLYYMHKIVDSVLHENEgrRVPITLFTKGGG-QWLEAMAETGCDALGLDWTIDISEARRRVGHKVALQGNMDP-SML 297
                 **********************************9998888************.7*********************99999**************.7** PP

                 GS-HHHHHHHHHHHHT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT CS
       URO-D 295 lgspeeiekevkeilekgaggkkgyilnlGhgippetppenvkalveavke 345
                 +++p+ ie+ev +il+ g g+++g+++nlGhgi++++ppe+  ++veav++
  EHT98623.1 298 YAPPARIEQEVASILD-GFGKGEGHVFNLGHGIHQDVPPEHAGVFVEAVHR 347
                 ****************.6999*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2809.51
//
Query:       EHT98624.1  [L=222]
Description: endonuclease V (deoxyinosine 3'endoduclease) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-73  247.3   0.0    1.2e-73  247.0   0.0    1.0  1  Endonuclease_5  Endonuclease V
  ------ inclusion threshold ------
      0.052   13.5   0.0      0.061   13.2   0.0    1.2  1  UvrC_HhH_N      UvrC Helix-hairpin-helix N-terminal
      0.089   12.2   0.0        0.2   11.0   0.0    1.7  2  DUF99           Protein of unknown function DUF99


Domain annotation for each model (and alignments):
>> Endonuclease_5  Endonuclease V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.0   0.0     2e-77   1.2e-73       5     196 ..      15     206 ..      11     207 .. 0.95

  Alignments for each domain:
  == domain 1  score: 247.0 bits;  conditional E-value: 2e-77
                     CC-------SGG.-SEEEEEEEEEEECTCEEEEEEEEEEETTTTEEEEEEEEEEE--S-SSTT-CHHHCHHHHHHHHCC-SS--SEEEEEC-SSS CS
  Endonuclease_5   5 kkveledklkek.lklvaGvDvsfvkeekkeavaalvvldlpslevvekavavvklsfpYipgfLaFRElpvllkaleklkqkpdvllvDGnGia 98 
                     + v+++d+++    ++++G+D+ f ++e   ++aalv+l++psl+++e+++a++++++pYipgfL+FRE+p+ll+a++ l+qkpd+l+vDG+Gi 
      EHT98624.1  15 ADVVRQDDFDVLpPRFIGGADAGF-EQEGAVTRAALVILEYPSLKLLEHRIARIETTMPYIPGFLSFREYPALLAAWNMLEQKPDLLFVDGHGIS 108
                     56777788877669**********.4445467*************************************************************** PP

                     STTS--HHHHHHHHHTS-EEEEESS-SSSBE----SSTTEEEEEEETTEEEEEEEESSTTS--EEEEEECSS-HHHHHHHHHHCS-T-SS-HHHH CS
  Endonuclease_5  99 HprrlGlAshlGvlldlptiGvaKsllvgkveepekekgsvvplvsegevigaalrtkknvkpiyvSvGhrisletalelvlallkkyrlPepir 193
                     HprrlG+Ash+G+++d+ptiGvaK++l+g++e  +++ gs +pl+++ge+ig+++r+k +++p++v++Ghr+sl++al++v++++++yrlPep+r
      EHT98624.1 109 HPRRLGVASHFGLMVDVPTIGVAKKRLCGRFEPLDETPGSRQPLMDKGEQIGWVWRSKVRCNPLFVATGHRVSLDSALDWVEKCTQGYRLPEPTR 203
                     *********************************************************************************************** PP

                     HHH CS
  Endonuclease_5 194 qAd 196
                     +Ad
      EHT98624.1 204 WAD 206
                     **9 PP

>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05     0.061      64     114 ..      60     134 ..       2     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                 HHHHHTTS...........................---SEEEESSSHHHHHHHHHHHHHTT-..---EEEEES.. CS
                 xxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  UvrC_HhH_N  64 lrRrfkrllke......................fsklPdLiliDGGkgqlnaakevleelgl..kipvvglaKdk 114
                 l+ r+ r+++                        +++PdL+++DG          v +++gl  ++p +g+aK++
  EHT98624.1  60 LEHRIARIETTmpyipgflsfreypallaawnmLEQKPDLLFVDGHGISHPRRLGVASHFGLmvDVPTIGVAKKR 134
                 445555555557777777777777777777777889*********9999999999999999999*********54 PP

>> DUF99  Protein of unknown function DUF99
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.56   3.3e+03       4      19 ..      29      44 ..      29      53 .. 0.63
   2 ?   11.0   0.0   3.4e-05       0.2     143     180 ..     172     210 ..     122     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.56
                EEEEEEEEE.....-S CS
       DUF99  4 rvlGiddsfferkkkd 19
                r++G +d+ fe++   
  EHT98624.1 29 RFIGGADAGFEQEGAV 44
                7899999999943333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.4e-05
                 EEEEE.ESS-HHHHHHHHHHC-SSSSS-HHHHHHHHHHH CS
       DUF99 143 lyvra.vGieleeaaklvrkltlegriPEPlRvAhliAs 180
                 l+v + + ++l+ a + v+k+t   r+PEP R A+ +As
  EHT98624.1 172 LFVATgHRVSLDSALDWVEKCTQGYRLPEPTRWADAVAS 210
                 5544326689999*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1686.13
//
Query:       EHT98625.1  [L=196]
Description: uncharacterized DUF416 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-81  271.5   0.1      3e-81  271.3   0.1    1.0  1  DUF416    Protein of unknown function (DUF416)


Domain annotation for each model (and alignments):
>> DUF416  Protein of unknown function (DUF416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.3   0.1   1.7e-85     3e-81       1     188 []       5     193 ..       5     193 .. 0.99

  Alignments for each domain:
  == domain 1  score: 271.3 bits;  conditional E-value: 1.7e-85
                 -HHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHH---GGG--STTHHHHHHHHHHHHHH CS
      DUF416   1 piekrlekLeswqqlaFaaaLcErmlPnYklFceatefgdakvlrnildlvWelltvkkakinfeaqlekleeiiPdledfdfygvypAlDacvalsal 99 
                 p++ rl+kLeswq+l+F+a+LcErm+PnY +Fc++t f+d++ +r+ildl+We+ltvk+akinf++qlekle++iPd +df++ygvypA+Dacvals++
  EHT98625.1   5 PVHLRLAKLESWQHLTFMACLCERMYPNYMAFCQQTAFADPALYRRILDLIWETLTVKDAKINFDSQLEKLEAAIPDGDDFEVYGVYPAIDACVALSEV 103
                 5799*********************************************************************************************** PP

                 HHHH.H-TTS--HHHHHHHHHHHHHHHHHHHH-TT--HHHHHH-HHHHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHGGG--TTS-- CS
      DUF416 100 lqal.aeedleeavevsklslntVaafieaqeeeelseeelkehplieeeldvqeellrlleeveardkelikelrqelreegvSNiGis 188
                 l+al ++e+le+a+evsk+s +tVa + ++q+++e+++eel+e+p++ +e+d+q+e++rll+++e+rd elik+lr +lre+g+SNiGi+
  EHT98625.1 104 LHALlSGETLEHAIEVSKTSITTVAILEMTQAGREMTDEELRENPAVIDEWDLQWEIFRLLADCEERDLELIKGLRSDLREAGISNIGIK 193
                 ***99***********************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1440.39
//
Query:       EHT98626.1  [L=90]
Description: HU, DNA-binding transcriptional regulator, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-33  112.9   1.1    6.6e-33  112.8   1.1    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    4.9e-08   33.1   0.1    5.1e-08   33.0   0.1    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    2.3e-06   27.3   0.1    3.2e-06   26.9   0.1    1.1  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
     0.0011   19.1   0.0     0.0016   18.6   0.0    1.2  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
      0.003   17.7   0.0     0.0032   17.6   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
  ------ inclusion threshold ------
      0.087   13.1   0.1       0.14   12.5   0.1    1.3  1  DUF2267          Uncharacterized conserved protein (DUF2267)
      0.092   12.2   0.1      0.094   12.2   0.1    1.1  1  NA37             37-kD nucleoid-associated bacterial protein


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   1.1   2.6e-36   6.6e-33       1      90 []       1      90 []       1      90 [] 0.99

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 2.6e-36
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     m+k++Li+ iaek++l+k++ak+++e++l +i+e+Lk+g+ v+l gFGtfkv++r++rtgrnp+Tg+++ki+a +v+ F  +k+lk+av+
       EHT98626.1  1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
                     9***************************************************************************************96 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1     2e-11   5.1e-08      33     118 ..       2      89 ..       1      90 [] 0.87

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2e-11
      HU-HIG  33 dfeeLceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkel 118
                 +  +L++ i++   ls+ + ka+l++    ++e+L++G  V+L ++G+F+++ ++ ++  ++++ +  +i  +++  f  gk+lk+++
  EHT98626.1   2 NKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAeRTGRNPQTGKEIKIAAANVpAFVSGKALKDAV 89 
                 5679***************************************************555566888888888888885588888888766 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.2e-09   3.2e-06       3      51 ..       6      54 ..       5      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.2e-09
  HU-CCDC81_bac_2  3 LansiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslne 51
                     L++ iae+ ++s ++A  ++e+  + + + L+e+  v+l + G++++n 
       EHT98626.1  6 LIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54
                     8999******************************************996 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.2e-07    0.0016      10      57 ..      10      55 ..       7      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.2e-07
  HU-CCDC81_euk_2 10 laaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnr 57
                     +a +a ls+ +++++++ t+ a+ + l+ g  v+l+  g+G++++ +r
       EHT98626.1 10 IAEKADLSKTQAKAALESTLAAITESLKEGDAVQLV--GFGTFKVNHR 55
                     8999*****************************999..5999999877 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0032      17      87 ..      14      86 ..       4      90 .] 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
  HU-CCDC81_euk_1 17 plltteqllliWdalgeyieeqlekgkgvhipnfGtFtfeapdldlkadknellrdkklr..rPvFvvdekfk 87
                       l++ q +++ +++   i e l++g +v++ +fGtF + ++   ++ + ++  + k      P Fv  + +k
       EHT98626.1 14 ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAanVPAFVSGKALK 86
                     56789999999*****************************666655555443332222223357777666665 PP

>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.4e-05      0.14       3      43 ..       5      44 ..       3      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.4e-05
                HHHHHHHHHHT---HHHHHHHHHHHHHHHHTTS-HHHHHHH CS
     DUF2267  3 efleevqerlgledreeAeratravLrtLrdrlteeeaadl 43
                ++++ ++e+++l+ + +A+ a++ +L ++ + l e++a +l
  EHT98626.1  5 QLIDVIAEKADLS-KTQAKAALESTLAAITESLKEGDAVQL 44
                6788899999995.899*******************99998 PP

>> NA37  37-kD nucleoid-associated bacterial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.7e-05     0.094     189     229 ..       4      44 ..       2      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
        NA37 189 lkavedfakkeeldkaekqelrkrvveylkeqleegesvdl 229
                 +++++ +a+k +l+k++++++ + + +++ e l+eg+ v+l
  EHT98626.1   4 TQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQL 44 
                 6889999*******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 735.56
//
Query:       EHT98627.1  [L=201]
Description: hypothetical protein CKS_0003 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-62  208.5   0.1      8e-62  208.3   0.1    1.0  1  DUF1481   Protein of unknown function (DUF1481)
  ------ inclusion threshold ------
      0.071   13.6   0.0       0.13   12.7   0.0    1.5  1  PSD3      Protein of unknown function (DUF1587)


Domain annotation for each model (and alignments):
>> DUF1481  Protein of unknown function (DUF1481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.3   0.1     9e-66     8e-62       1     186 []      12     197 ..      12     197 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.3 bits;  conditional E-value: 9e-66
     DUF1481   1 asGyiaddgvvrlWrkdraqqedvvlmsvyspykgketevteYrwqegkLreikregegkkpesvqlRfdkeGevvfmqrqldgrkeplsedqlalyqf 99 
                 asGy+ad+g vr+Wrk++++ ++v++ + y+p++++++e+t+Yrw  ++L++++r+++g  p++v+lRfd++G ++fmqrql++++e++s d ++ly+f
  EHT98627.1  12 ASGYLADRGSVRIWRKNTDH-QSVHIRTLYNPFNSEKSETTDYRWLGDHLVSVERQVKGAPPDDVTLRFDQNGSLNFMQRQLATQREAVSPDTVELYKF 109
                 8******************8.9***************************************************************************** PP

     DUF1481 100 eAkrllelskalragrveLvQGrWqge.tvttCegkevklefdqtleaflakrqsesssdlsvAwleapegeqLLlvanddfCvwePk 186
                 +A+r++++s+al +grv L+QG+W+g+  v+tC+g++v+++fd+++ ++l++  ++s+ +l+v+wleapeg qLL v+ +d+C+ ePk
  EHT98627.1 110 DAQRMRDVSDALLSGRVFLKQGHWAGGnVVETCDGQKVTPAFDSEAWQTLTHYRRHSAGPLMVSWLEAPEGVQLLRVSHKDECADEPK 197
                 *************************99899*********************************************************7 PP

>> PSD3  Protein of unknown function (DUF1587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05      0.13      21      52 ..      65      96 ..      57     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
        PSD3 21 dlaaslpaDpasegFdnnasalsvspllleqY 52
                ++++  p+D+++  Fd+n+s  +++  l++q 
  EHT98627.1 65 RQVKGAPPDDVTLRFDQNGSLNFMQRQLATQR 96
                477899********************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1784.72
//
Query:       EHT98628.1  [L=426]
Description: phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-83  279.0   0.1    2.5e-83  278.7   0.1    1.1  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
      1e-35  122.4   0.1      2e-35  121.4   0.1    1.5  1  GARS_N       Phosphoribosylglycinamide synthetase, N domain
    1.3e-27   95.9   0.3    1.9e-26   92.1   0.1    2.4  2  GARS_C       Phosphoribosylglycinamide synthetase, C domain
    5.4e-06   26.6   0.0      1e-05   25.6   0.0    1.5  1  ATP-grasp_3  ATP-grasp domain
    1.3e-05   24.8   0.0    2.4e-05   23.9   0.0    1.4  1  CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP bindin
    0.00065   19.3   0.0      0.001   18.7   0.0    1.2  1  ATP-grasp    ATP-grasp domain
     0.0017   17.9   0.0     0.0048   16.5   0.0    1.7  1  ATP-grasp_4  ATP-grasp domain
  ------ inclusion threshold ------
      0.035   13.7   0.0       0.06   12.9   0.0    1.3  1  RimK         RimK-like ATP-grasp domain


Domain annotation for each model (and alignments):
>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.7   0.1   1.1e-86   2.5e-83       1     194 []     103     296 ..     103     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 278.7 bits;  conditional E-value: 1.1e-86
                 HBHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEE CS
      GARS_A   1 asKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllal 99 
                 +sK+f+kd+l++++iptaey++ft+++ a +y++e++a++ V+KadglaagKgviva++ +ea +av+++l  ++fG+ag+++viEe+l+GeE s++++
  EHT98628.1 103 GSKAFTKDFLARHNIPTAEYHNFTEVAPALAYLREKGAPI-VIKADGLAAGKGVIVAMTLQEAENAVQDMLAGNAFGDAGHRIVIEEFLDGEEASFIVM 200
                 69**************************************.********************************************************** PP

                 ECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEETTE.EEEEEEESS--TTCH CS
      GARS_A 100 vdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlvedg.pkvlefnvRfgDpet 194
                 vdg++v p++++qdhkrv++gD+gpnTGGmGayspapvvt+e++++++++++ ptv g+++eg+ ++G+Lyaglm+ ++g pkv+efn+RfgDpet
  EHT98628.1 201 VDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDEIHQRVMDQVIWPTVRGMAAEGNVYTGFLYAGLMIDKTGqPKVIEFNCRFGDPET 296
                 *******************************************************************************99**************8 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.1     9e-39     2e-35       1      90 []       1     102 [.       1     102 [. 0.97

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 9e-39
                 EEEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG.............TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CCC CS
      GARS_N   1 mkvLvvGsGGRehalawklaqspkvekvyvapgNagt.............edlealvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpskea 86 
                 mk+L++G+GGRehalawk aqsp ++ v+vapgNagt             +d+ al++fa++e+idl++vGpeapLv Gv+da++++ g+k+fGp+++a
  EHT98628.1   1 MKILIIGNGGREHALAWKAAQSPLATAVFVAPGNAGTaleralqnvdispTDIPALLAFAQREQIDLTIVGPEAPLVIGVVDAFHAA-GLKIFGPTQAA 98 
                 9******************************************99999998899******************************776.*********** PP

                 CHHH CS
      GARS_N  87 AqlE 90 
                 AqlE
  EHT98628.1  99 AQLE 102
                 ***9 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   3.4e+02      46      74 ..     155     183 ..      81     186 .. 0.87
   2 !   92.1   0.1   8.7e-30   1.9e-26       2      80 .]     332     421 ..     331     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                 EEEESSHHHHHHHHHHHHTTCB-TTEE-- CS
      GARS_C  46 vavgetleeArakayeavkkikfeglfyR 74 
                 v v++tl+eA++++ + ++   f ++ +R
  EHT98628.1 155 VIVAMTLQEAENAVQDMLAGNAFGDAGHR 183
                 567899******99999998888777776 PP

  == domain 2  score: 92.1 bits;  conditional E-value: 8.7e-30
                 EEEEEEETTTTSS--ST-EEBS......TTEEEEESSEE.....EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TTEE--STTTHH CS
      GARS_C   2 vgvvlaskGYPgsyekgkeitg......egvkvfhagtk.....lvtsGGRvlavvavgetleeArakayeavkkikfeglfyRkDIGar 80 
                 +gvvla++GYPg y++g++i+g       + kvfhagt+     ++t+GGRvl+v+a+g+++++A+++ay+ ++ i ++g+f+R+DIG+r
  EHT98628.1 332 LGVVLAAGGYPGPYANGEQIHGlpqeeaADGKVFHAGTRlegdrVLTNGGRVLCVTALGDDVAAAQKRAYALAQPIFWQGSFCRRDIGYR 421
                 79******************99****995557*******999999*******************************************86 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.7e-09     1e-05       4     158 ..     105     291 ..     103     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.7e-09
                  HHHHHHHHTTT.S---....-EESS--.......SSSEEEEESS-------B--SS--TTE...................EEEE---SEEEEEEEEE. CS
  ATP-grasp_3   4 KlktykkLkeagvkvPtkleaeeleee.......ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieGkplSvsllsd 82 
                  K +t ++L ++++++ ++ + +e++++         ++v+K    a+g++v v++  +eae+a++ +             ++ ef++G+++S  +++d
   EHT98628.1 105 KAFTKDFLARHNIPTAEYHNFTEVAPAlaylrekGAPIVIKADGLAAGKGVIVAMTLQEAENAVQDMLagnafgdaghriVIEEFLDGEEASFIVMVD 202
                  7888888998855555444444444445566655999****99999********99999998888776899*************************** PP

                  SSSEEEEEEEEEEEET........TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEE..........ESS..SEEEEEEESS- CS
  ATP-grasp_3  83 gekvlvlavnrqliekaeke....fvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlv..........lkd.eepyviEvNPRl 158
                  ge+vl++a+++ +   +  +        G  +p+++  +e  ++++ +v+     ++G++    v          + + ++p viE N R+
   EHT98628.1 203 GENVLPMATSQDHKRVGDGDtgpnTGGMGAYSPAPVVTDEIHQRVMDQVIWPT--VRGMAAEGNVytgflyaglmIDKtGQPKVIEFNCRF 291
                  *********99887664433777777888888999888888888888887654..555555544444444555535447899999999998 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   2.4e-05       5     179 ..     108     290 ..     104     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                  HHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHST..S-EEEEE--SSSEEEEEEEE CS
  CPSase_L_D2   5 akealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgn..kqvlvekslkgpkeiEvevl 100
                   k+ l++ n+p+++  +   +++  ala  +e g P++ika     GkG  va + +e +++v+  la    afg+  +++ +e++l+g  e  + v+
   EHT98628.1 108 TKDFLARHNIPTAEYHNF--TEVAPALAYLREKGAPIVIKADGLAAGKGVIVAMTLQEAENAVQDMLAGN--AFGDagHRIVIEEFLDGE-EASFIVM 200
                  567788888888888888..99999**************************************9988776..78863379********95.7788899 PP

                  EETTS-EEEEEEEEECCEC.......TCCCCEEEES-SS--HHHHHHHHHHHH.HHHHHHT-EEEEEEEEEEET....TTTEEEEEEEESS CS
  CPSase_L_D2 101 rDakgnvitvcerenslql.......rtqkvievAPsqtLtdeerqalreaav.kvvrevgvvgagtveflldp....kskeyyviEvNtR 179
                   D + nv+ +++ +    +        t+ +    P++++tde +q++  + +  +vr +  +g+    fl+      k+++  viE N R
   EHT98628.1 201 VDGE-NVLPMATSQDHKRVgdgdtgpNTGGMGAYSPAPVVTDEIHQRVMDQVIwPTVRGMAAEGNVYTGFLYAGlmidKTGQPKVIEFNCR 290
                  9986.55555544444444456667778888888999999999888777666524666666655555556543211225777777777777 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.5e-07     0.001       2      82 ..     113     199 ..     112     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.5e-07
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlv 82 
                 +++++p++++   ++ + + + ++e g+p+v+K + +   GkG  v    +++e+a++ +        +++++++Eef +   E s +v
  EHT98628.1 113 ARHNIPTAEYHNFTEVAPALAYLREKGAPIVIK-ADGLAAGKGVIVAMTLQEAENAVQDMlagnafgdAGHRIVIEEFLDG-EEASFIV 199
                 6799*****************************.566668*****************9999999999889999*****984.4666655 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.1e-06    0.0048       3     154 ..     140     292 ..     138     297 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.1e-06
  ATP-grasp_4   3 lPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrl.. 98 
                   P+viK    ++  GV+++ + +e ++av+++ +      + + +    ++++++Ee+++GeE +  + +d e    ++   +++   + d+      
   EHT98628.1 140 APIVIKADGLAAGKGVIVAMTLQEAENAVQDMLAG-----NAFGD---AGHRIVIEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTgg 229
                  79*************************99999955.....45555...4789*************999995444434444555655555554322112 PP

  ATP-grasp_4  99 ...yvtsakvieetlealee.....llkevnallglknfpvHiElrvsedgkiipiEvnplrfa 154
                     y  ++ v+ e ++++++     +++ ++a+ ++  + + + l ++++g+  +iE+n  rf+
   EHT98628.1 230 mgaYSPAPVVTDEIHQRVMDqviwpTVRGMAAEGNVYTGFLYAGLMIDKTGQPKVIEFNC-RFG 292
                  233544444555555555331211145666677777777777777777777777777776.666 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.7e-05      0.06       6     104 ..     107     210 ..     103     236 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.........GGG--EEEEE--SS-SEEEEEEEE CS
        RimK   6 kslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.........lkeailvqeyieeaenediRvlvv 95 
                  +   La+++i++ + +   +   a +++ +   ++P+v+K      G +v++a + q++++ ++            ++i++ e+++ +e     +++v
  EHT98628.1 107 FTKDFLARHNIPTAEYHNFTEVAPALAYLREK--GAPIVIKADGLAAGKGVIVAMTLQEAENAVQDmlagnafgdAGHRIVIEEFLDGEEASF--IVMV 201
                 56678999999998888888777777777776..6*******************999999887765555677777778889****99776543..4455 PP

                 TTEEEEEEE CS
        RimK  96 ddevvaalr 104
                 d+e v  + 
  EHT98628.1 202 DGENVLPMA 210
                 555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3145.73
//
Query:       EHT98629.1  [L=529]
Description: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.5e-119  396.6   6.0   9.3e-119  396.2   6.0    1.1  1  AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
    1.2e-30  105.6   0.0      3e-30  104.3   0.0    1.8  1  MGS              MGS-like domain
  ------ inclusion threshold ------
       0.66   10.5   5.9        3.5    8.1   0.0    3.7  3  CoA_binding_2    CoA binding domain


Domain annotation for each model (and alignments):
>> AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.2   6.0  1.6e-122  9.3e-119       1     296 []     137     460 ..     137     460 .. 0.96

  Alignments for each domain:
  == domain 1  score: 396.2 bits;  conditional E-value: 1.6e-122
                      HHHTTTT-EEE-SGGGHHHHHHHHHC..T.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..............CSE...EEEEEEEEESSSS CS
  AICARFT_IMPCHas   1 AAKNhksVtvvvdpadYeevleelkk..gevsletrkklaakaFahtaaYDaaiaeylskq..............lpetlklslekkqkLrYGe 78 
                      AAKNhk+V++vv+ +dY ++++el++  ++++letr +la+kaF+htaaYD++ia+y+ +               +p+tl+l++ kkq++rYGe
       EHT98629.1 137 AAKNHKDVAIVVKSSDYPAIIAELDAnqNSLTLETRFDLAIKAFEHTAAYDSMIANYFGSMvpayhgeteqpagrFPRTLNLNFVKKQDMRYGE 230
                      9************************98779****************************77788888888889888999**************** PP

                      STTS-EEEEE-TT..STTHHH-EEEESS---HHHHHHHHHHHHHHCTSE..EEEEEETTEEEEEEEESSHHHHHHHHHCCSHHHHTTEEEEECC CS
  AICARFT_IMPCHas  79 NphQkaalyeeee..eeglakaeqlqGkelsynNllDadaalelvkefa..avaivKHanpcGvAvgetlaeAyekAlaaDpvSaFGgiialnr 168
                      N+hQ+aa+y ee+  e+++a+aeq+qGk+lsynN++D+daale+vkefa  a+aivKHanpcGvAvge++ +Aye+A+++Dp+SaFGgiia+nr
       EHT98629.1 231 NSHQDAAFYIEENvqEASVATAEQVQGKALSYNNIADTDAALECVKEFAepACAIVKHANPCGVAVGESILAAYERAYQTDPTSAFGGIIAFNR 324
                      *********988788999******************************556888**************************************** PP

                      EE-HHHHHHH.TTS-ECEEEECEE-CCHHHCCTTSSS-EEEE-SS-.......EEEEETTEEEEEE--G..TTCCCSEEECSC---HHHHHHHH CS
  AICARFT_IMPCHas 169 evdaetaeei.kkefleviiApsfeeealeilkkkknlrvlelkee.......elrsvsgglLvqerdeakieeeelkvvtkkkpteeeledll 254
                      e+d++ta++i +++f+eviiAps +e+al+i ++k+n+rvl + e+       ++++v+gglLvq+rd  ++++++l+vv+k++p+e+el+d l
       EHT98629.1 325 ELDEATAQAIiSRQFVEVIIAPSATEAALKITAAKQNVRVLVCGEWqgrvaalDFKRVNGGLLVQDRDLGMVDASQLRVVSKRQPSEQELRDAL 418
                      *******987589******************************9955667889***************************************** PP

                      HHHHHCCCS-SS-EEEEETTEEEEEE-SSSSHHHHHHHHHHH CS
  AICARFT_IMPCHas 255 fawkvvkhvkSNaivlakdgqtvgiGaGqmsRvdsarlAvek 296
                      f+wkv+k+vkSNaiv+a+d++t+giGaGqmsRv sa++A+ k
       EHT98629.1 419 FCWKVAKFVKSNAIVYARDNMTIGIGAGQMSRVYSAKIAGIK 460
                      ***************************************865 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0     5e-34     3e-30       1      95 []      19     132 ..      19     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 5e-34
                 THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH................HHHHHHHTTSCC...EEEEE--THHHHHHCHHH CS
         MGS   1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrv................eildaikngeid...lvintlypfkatvakdgy 80 
                 g++e+a++l++ g+ell+TgGTa+ll+eag+pv+ev+++tg++e+++grv                ++ + ++++ i+   +v+++lypf++tvak+++
  EHT98629.1  19 GILEFAQALSQRGVELLSTGGTARLLAEAGLPVIEVSDYTGFPEMMDGRVktlhpkvhggilgrrgQDDAVMAQHAINpidMVVVNLYPFAQTVAKPDC 117
                 699***************************************************************999999999999999****************** PP

                 HHHHHHHHTTSHEES CS
         MGS  81 kirraaenidIplpt 95 
                 ++++a+enidI++pt
  EHT98629.1 118 SLEDAVENIDIGGPT 132
                 *************98 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2       0.2   1.2e+03      57      76 ..     127     161 ..      66     168 .. 0.66
   2 ?    2.5   0.3     0.033     2e+02      57      97 ..     338     379 ..     232     396 .. 0.74
   3 ?    8.1   0.0   0.00059       3.5      73     106 ..     486     520 ..     482     523 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.2
                    -...............EEEE-S-HHHHGGGHHHHH CS
  CoA_binding_2  57 d...............lvdvftppeatpeivkeal 76 
                    d                v +++++++ p+i+ e+ 
     EHT98629.1 127 DiggptmvrsaaknhkDVAIVVKSSDYPAIIAELD 161
                    34444444444444446777788888888888875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.033
                    -EEEE-S-HHHHGGGHHHHHHH.--SEEEE-TT---HHHHHH CS
  CoA_binding_2  57 dlvdvftppeatpeivkealal.gakavwlqpgsedeeaael 97 
                    + v v++ p+at++ +k  +a+ +++++++ +     +a+++
     EHT98629.1 338 QFVEVIIAPSATEAALKITAAKqNVRVLVCGEWQGRVAALDF 379
                    367778888888888777755525777777655555555555 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00059
                    HHHHHH--SEEEE-TT..---HHHHHHHHHTT-EEE CS
  CoA_binding_2  73 kealalgakavwlqpg..sedeeaaelaeeagirvv 106
                    ++a+a+g+ +v+ qpg  ++d+e++++a+e+gi ++
     EHT98629.1 486 DAAAAVGVSCVI-QPGgsIRDDEVIAAADEHGIAMI 520
                    677888888875.67779***************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3807.86
//
Query:       EHT98630.1  [L=229]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-15   56.5   0.0    1.6e-14   53.9   0.0    2.2  2  HTH_Tnp_1     Transposase
    1.4e-06   27.9   0.0      0.017   14.9   0.0    2.3  2  HTH_23        Homeodomain-like domain
     0.0034   17.5   0.0       0.66   10.2   0.0    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.054   13.4   0.1       0.68    9.9   0.0    2.3  2  MarR_2        MarR family
      0.084   13.4   0.2        3.4    8.3   0.0    2.6  3  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.9e+03      14      38 ..       9      33 ..       8      37 .. 0.83
   2 !   53.9   0.0   4.6e-18   1.6e-14       3      57 ..      91     145 ..      89     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspn 38
                +++++ +++    +e  rr+g+ + 
  EHT98630.1  9 EALHLHFDENLARVEAGRRLGIPKT 33
                67788889999999999****9875 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 4.6e-18
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspae 57 
                 rr  ++++fK+++V+ sl+pg++v+++Ar+ g+++n L++Wr++yr+g++ +  +
  EHT98630.1  91 RRPNFPRAFKIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRKGLLLPHNS 145
                 6789******************************************999876665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.8e-06     0.017       9      46 ..       9      47 ..       7      48 .. 0.88
   2 !   10.7   0.0   9.7e-05      0.35      11      46 ..     104     139 ..      97     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ +  l + e+ r+Lg+++ Tv+    r+r+ Gl
  EHT98630.1  9 EALHLHFDeNLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                67777776699999*********************9998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                 +   ++ G +v++ Are g++ + + +w++ y ++Gl
  EHT98630.1 104 VEKSLQpGTNVAQLARENGINDNLLFNWRSLY-RKGL 139
                 4445568999**********************.5775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0076        27      11      41 ..      16      47 ..       5      53 .. 0.81
   2 !   10.2   0.0   0.00018      0.66       2      40 ..     100     138 ..      99     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0076
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGi 41
                + + ++ ea r+lgi  +tv ++  r+++ G+
  EHT98630.1 16 DENlARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                45557889************999999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00018
      HTH_28   2 Rleiikllaa.GhsvreaArelgisrrtvyrWikryeegG 40 
                 ++  ++  ++ G +v+++Are gi+   +  W++ y++ G
  EHT98630.1 100 KIALVEKSLQpGTNVAQLARENGINDNLLFNWRSLYRK-G 138
                 5555655565588************************9.5 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019      0.68      10      50 ..       7      47 ..       4      47 .. 0.91
   2 ?    0.7   0.0      0.14     5e+02      18      33 ..     110     123 ..     102     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l+  e  rrlg++k +v  +  r+ +aGL
  EHT98630.1  7 LLEALHLHFDENLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                6888888888889999***********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 TTSEEEHHHHHHHHTS CS
      MarR_2  18 pgrdltvgelarrlgl 33 
                 pg   +v++lar+ g+
  EHT98630.1 110 PG--TNVAQLARENGI 123
                 66..799******998 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058   2.1e+02      25      55 ..      18      48 ..      10      51 .. 0.86
   2 ?    8.3   0.0   0.00094       3.4      14      71 ..     100     154 ..      85     166 .. 0.78
   3 ?   -2.9   0.0       2.9     1e+04      59      71 ..     207     219 ..     196     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.058
  LZ_Tnp_IS481 25 rrtvaqvarelGvslrtaykwlarfraeGld 55
                  + +  ++ r lG+ + t      rfr  Gl 
    EHT98630.1 18 NLARVEAGRRLGIPKTTVCDLFVRFRKAGLS 48
                  5555678999*****************9995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00094
  LZ_Tnp_IS481  14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldrssrPrrvPkat 71 
                   ++ lv++ ++    vaq are G+  +  + w + +r  Gl  ll   s P   P   
    EHT98630.1 100 KIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRK-GL--LLPHNSEPALLPVML 154
                   56799***************************999984.44..455666666666555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
  LZ_Tnp_IS481  59 drssrPrrvPkat 71 
                    r sr   +P+a 
    EHT98630.1 207 KRGSRCSPSPQAH 219
                   5777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1785.78
//
Query:       EHT98631.1  [L=39]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   24.0   0.0    2.9e-05   23.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.9e-05      71     100 ..       2      30 ..       1      31 [. 0.92

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-09
   TnpB_IS66  71 wpkeeeeeaveltaeqlelLleGldlervk 100
                 wp  +++++v+lt++ql++LleG+++++++
  EHT98631.1   2 WPL-TRDGKVHLTPAQLSMLLEGINWKHPQ 30 
                 996.9999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 385.34
//
Query:       EHT98632.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-97  324.1   5.0    1.6e-96  323.1   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      5e-17   61.8   0.0    2.1e-16   59.8   0.0    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    8.6e-15   54.9   1.3    1.9e-14   53.8   1.3    1.6  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.6e-11   44.8   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.016   15.0   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.4   2.9      0.039   13.5   0.6    2.0  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.055   12.7   0.5      0.094   11.9   0.5    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.059   13.7   3.0       0.11   12.8   3.0    1.4  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.13   12.2   0.6         16    5.5   0.0    3.1  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.21   11.9   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.36   10.9  10.9       0.66   10.0  10.9    1.4  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.6   5.3        3.4    7.8   0.2    2.9  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.1  12.5      0.056   12.0   6.9    1.7  2  FUSC             Fusaric acid resistance protein family
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        3.2    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        6.5    6.3  10.0        6.1    6.3   7.9    1.9  2  HAUS-augmin3     HAUS augmin-like complex subunit 3


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7       0.1        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  323.1   0.1   1.8e-99   1.6e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHT98632.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 323.1 bits;  conditional E-value: 1.8e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98632.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98632.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +ae+rla+r++++  l+++l++w+++q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags+ G+e
    EHT98632.1 380 GSPAEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDSGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   2.4e-19   2.1e-16       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.4e-19
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL +++d ++++++++LLPW
      EHT98632.1 479 SLIGTCRLNGVEPEAWLRYVLGHIQD-WSVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.1e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.1e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98632.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   3.9e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.9e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98632.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4     3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98632.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.4e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?    0.8   0.1      0.32   2.9e+02     125     177 ..     351     415 ..     344     453 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98632.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.32
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............eeqleelerrlekaikrlleekkqrleklasr 177
                   d+ a TPt +   +++++ +l            e++l+  ++r+   +++l +  +++++ l+++
    EHT98632.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaEDRLAVRKARTVALMQSLYDWIQSQMKVLSRH 415
                   78899999999999988887777777777777755566556666655555554444444333333 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.7e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98632.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4    0.0001     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98632.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98632.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5    0.0001     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98632.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00012      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98632.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00037      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1       0.2   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98632.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98632.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         2   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0       0.1        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.5   0.0     0.018        16       9      40 ..     341     372 ..     339     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98632.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98632.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.018
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98632.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00029      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98632.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00066      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00066
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98632.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00074      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00074
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98632.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0038       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2      0.09        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0038
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98632.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.09
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98632.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.3e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81
   2 ?   -1.3   0.3      0.67     6e+02     204     262 ..     378     428 ..     337     458 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98632.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.67
        FUSC 204 rsqaayesprirararalrrllsrmlallal.lsslarllarlraeeaaavpelaallae 262
                 +    +e++        l+   +r++al+++ ++ ++++++ l++++++a +++a ll++
  EHT98632.1 378 IRGSPAEDR--------LAVRKARTVALMQSlYDWIQSQMKVLSRHSDTA-KAFAYLLKQ 428
                 333333333........333333333333220233334444444433333.234444444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0019       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98632.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0075       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0075
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98632.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0068       6.1      70     152 ..      13      97 ..       2     111 .. 0.82
   2 ?   -1.8   0.0         2   1.8e+03     132     166 ..     383     417 ..     375     434 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0068
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98632.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
  HAUS-augmin3 132 aqeelraenaetnavLqqlteeakqlaeyfeeaek 166
                   a++ l+++ a+t a++q+l +  +++++ ++  + 
    EHT98632.1 383 AEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSD 417
                   56778899999999999999999988888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1465  (0.0817112); expected 358.6 (0.02)
Passed bias filter:                     1026  (0.0572257); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.36
# Mc/sec: 4379.51
//
Query:       EHT98633.1  [L=345]
Description: FAD-binding UDP-N-acetylenolpyruvoylglucosamine reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-38  129.5   0.0      1e-37  128.9   0.0    1.3  1  MurB_C         UDP-N-acetylenolpyruvoylglucosamine reductase,
    5.1e-23   81.3   0.1    8.7e-23   80.6   0.1    1.4  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> MurB_C  UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   1.1e-41     1e-37       2     120 .]     209     332 ..     208     332 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.1e-41
                 HHHHHHHHHHHHSHCHSTTCTCEESESB---EESHHHHHHHH.......EEEETTSSEEE-HHHHHHHTT-TTSEETTEEEESSSTTEEEESSS--HHH CS
      MurB_C   2 ireavlelrakklmvkqpldtpsaGSfFknPivegeeaeelk.......eyeaeegevklsagwLIeqaglkGlrvggaqvsekhalflvNgggataad 93 
                 + +av+++r++kl   +p  t+++GSfFknP++++++ae l        +y++ eg+vkl+agwLI+q++lkG rvgga+v++++al+l+N  +at  d
  EHT98633.1 209 VFHAVCHMRQSKL--PDPKITGNVGSFFKNPVISRQQAEVLLnhypampNYPQPEGTVKLAAGWLIDQCQLKGCRVGGAEVHQQQALVLINAADATPGD 305
                 889*********8..777788**************9999999*************************************************88****** PP

                 HHHHHHHHHHHHHHHHS----BSSEEE CS
      MurB_C  94 ilalarevrkkVkekfgveLepEvvli 120
                 i+ala++vr++V ekf+v+LepEv++i
  EHT98633.1 306 IVALAKKVRARVGEKFDVWLEPEVRFI 332
                 ************************997 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   9.7e-27   8.7e-23       5     138 ..      24     152 ..      20     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 9.7e-27
                    EEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEET..TTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCG CS
  FAD_binding_4   5 vrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileide..eegtatveaGvtlgdlvealaakglllglepgsgip 97 
                    + +e++e + aa+++ ++++ p+l++G Gs++l  ++  + g+v+   r+ + +ei +  e++ ++v+aG+++++lv+ +  ++++ gle++++ip
     EHT98633.1  24 IVAETPEAILAAWQMSQRNQQPFLILGEGSNVLfLED--FAGIVVLN-RIAG-VEIRDenERWKLHVGAGENWHQLVKMT-LEKGISGLENLALIP 114
                    6789*****************************7777..78888855.7888.444442359******************.9999*********** PP

                    SBHHHTTTTT-EETTEEGG--HHGTEEEEEEEE.TTSEEEEE CS
  FAD_binding_4  98 gtvGGaiatnagGygsekyGlirdnvlglevvl.adGevvrl 138
                    g+vG+a+++n+g+yg+e++    d++++++v++  +G + rl
     EHT98633.1 115 GMVGSAPIQNIGAYGVELK----DVCEYVDVLNlQTGVTERL 152
                    *******************....*********9999977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2811.61
//
Query:       EHT98634.1  [L=319]
Description: biotin-protein ligase/biotin operon repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-23   82.8   0.0    2.8e-23   82.3   0.0    1.2  1  BPL_LplA_LipB    Biotin/lipoate A/B protein ligase family
    8.4e-14   51.2   0.1    1.9e-13   50.1   0.1    1.6  1  BPL_C            Biotin protein ligase C terminal domain
    6.3e-12   45.3   0.0    1.3e-11   44.2   0.0    1.5  1  HTH_11           HTH domain
  ------ inclusion threshold ------
      0.017   14.7   0.4      0.025   14.1   0.4    1.2  1  BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
      0.037   14.1   0.0      0.089   12.9   0.0    1.6  1  HTH_20           Helix-turn-helix domain
      0.048   13.6   0.1       0.87    9.6   0.0    2.5  2  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.054   13.1   0.0       0.12   12.0   0.0    1.6  1  HTH_24           Winged helix-turn-helix DNA-binding
      0.062   13.2   0.0       0.15   11.9   0.0    1.6  1  HTH_5            Bacterial regulatory protein, arsR family
       0.11   12.9   0.1         24    5.3   0.0    2.3  2  DUF1323          Putative transcription regulator (DUF1323)
       0.19   12.3   0.0       0.34   11.5   0.0    1.4  1  Mga              Mga helix-turn-helix domain


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   1.5e-26   2.8e-23       1     131 []      83     208 ..      83     208 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1.5e-26
                    EEEEES-HHHHHH..GCGGG--TT-EEEEEEESS-B....-B--B-TT.SEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH......HHTT-T CS
  BPL_LplA_LipB   1 lgevikstntllkeslnsselesgglvvvrrqtgGr....nvwhspkg.eltyslllspeqktfqnrvlelyvsllvlavlealgyrdskpgiegi 91 
                    +++vi+stn++l    + ++l+sg ++v+++q++Gr    ++w+sp g +l++s+ ++ eq    ++ +  + +++ + ++e+l      +     
     EHT98634.1  83 VIPVIDSTNQYLL--ERMDSLPSGAVCVAEYQQAGRgrrgRHWFSPFGaNLYMSMYWRLEQ---GPAAAMGLSLVIGIVMAETL------QSLGAE 167
                    5799******999..677889***************************************9...87888888999999999999......577788 PP

                    TEEEETTTEEEETTEEEEEEEEEEEE.TTS-EEEEEEEEEE CS
  BPL_LplA_LipB  92 pvfikwpnDlyvngrKlaGiavtstr.gktlhhivigvgvn 131
                     v++kwpnD+y+ +rKlaGi+v+ t  ++ + +iv+g+g+n
     EHT98634.1 168 DVRVKWPNDIYLHDRKLAGILVELTGkTGDAAQIVMGAGIN 208
                    88888*********************9************99 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1     1e-16   1.9e-13       1      48 []     271     317 ..     271     317 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1e-16
                 STTSEEEEEETSCEEEEEEEEE-TTSEEEEEETTE.EEEESSCCEEEE CS
       BPL_C   1 hsGqeVtlededgkveGiavGIdddGaLllktddglqpdinsGdislr 48 
                 +++++V+l+++ ++v+Gia+GId +G Lll+++++ ++++ +G+islr
  EHT98634.1 271 FINRPVRLLMGEREVHGIARGIDNQGGLLLEQEGE-IKSWMGGEISLR 317
                 69*********************************.**********97 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   7.3e-15   1.3e-11       4      54 ..       9      58 ..       8      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 7.3e-15
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrGY 54
                +++ +L +  ++ sge+L e L++Sr+++ ++I++L+++g++++ + g+GY
  EHT98634.1  9 KLIDIL-SDGEFHSGEQLGETLGMSRAAINKHIQTLKSWGLEVYTVTGKGY 58
                677788.66677*************************************** PP

>> BPL_LplA_LipB_2  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.4e-05     0.025      52     181 ..     141     266 ..     129     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
  BPL_LplA_LipB_2  52 vplakAaamlpvlmvalqdAlgalaPPevavhlewpgtilvngarvGgvrlaaseadeeevPdwlvvglelalekeseepGetpde.taLeeEG 144
                      +  a A+ +  v+++ +++ l+ l+     v+++wp++i++ + ++ g+ ++   ++ +   + +v+g+ ++l+ ++++  +  +    L+e G
       EHT98634.1 141 QGPAAAMGLSLVIGIVMAETLQSLGA--EDVRVKWPNDIYLHDRKLAGILVELTGKTGD--AAQIVMGAGINLAMRNADAAQINQGwINLQEAG 230
                      56688999999**************8..678889*******999998888888775544..467999999999988886665444415565555 PP

  BPL_LplA_LipB_2 145 caeveavalleslarhllawinrweedGfrpvhaewl 181
                         +++++l ++l+  l +++  +e++G++p  a+w 
       EHT98634.1 231 -VTLDRNDLAATLINRLREALPVFEQEGLAPFVARWA 266
                      .57999*****************************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     5e-05     0.089       8      53 ..       3      48 ..       3      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
                S-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20  8 ahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagL 53
                +h v +++ + L+++e ++ ++l e+l++s++ +++H+++L + gL
  EHT98634.1  3 DHSVPLKLIDILSDGEFHSGEQLGETLGMSRAAINKHIQTLKSWGL 48
                68899999****99***************************99888 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00048      0.87      25      50 ..      23      48 ..      18      58 .. 0.90
   2 ?    1.1   0.0      0.22   3.9e+02       2      29 ..     183     218 ..     182     242 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00048
                HHHHHHTTSSHHHHHHHHHHHHHTTS CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkregl 50
                e+l++ lG++r  +++ ++ Lk  gl
  EHT98634.1 23 EQLGETLGMSRAAINKHIQTLKSWGL 48
                89*******************98776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                 HHHHHHHHH....HCTTT......C.EEEEEHHHHHHHH CS
   HTH_Crp_2   2 RlArfLlrl....aerag......g.eielpltqeelAs 29 
                 +lA  L++l        +      g  i+l + +++ A+
  EHT98634.1 183 KLAGILVELtgktG---DaaqivmGaGINLAMRNADAAQ 218
                 79999999954331...1222333356888888888776 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.5e-05      0.12       7      42 ..       9      44 ..       7      48 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.5e-05
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLe 42
                k++ +L +    s  +L e lg+S++++n++++ L+
  EHT98634.1  9 KLIDILSDGEFHSGEQLGETLGMSRAAINKHIQTLK 44
                5566666666677889*****************997 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.4e-05      0.15       5      44 ..       8      48 ..       5      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.4e-05
                HHHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
       HTH_5  5 lkILklLaege.lcvcelaeelglsqstvShHLkkLreaGL 44
                lk++ +L++ge ++  +l e lg+s++++  H   L+  GL
  EHT98634.1  8 LKLIDILSDGEfHSGEQLGETLGMSRAAINKHIQTLKSWGL 48
                7999*******99999*******************998776 PP

>> DUF1323  Putative transcription regulator (DUF1323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.014        24       4      23 ..      23      42 ..      21      56 .. 0.83
   2 ?    5.0   0.0     0.016        29      37     116 ..     196     274 ..     188     277 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.014
     DUF1323  4 eelaellGyarqtinrWvRk 23
                e l+e lG++r +in+ +  
  EHT98634.1 23 EQLGETLGMSRAAINKHIQT 42
                789*************9975 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.016
     DUF1323  37 Gkarlvlideqvrefirnaealrnsaalyrveetlaeyavtvdaeleallieal.eeltpseqkklasllsr.eGiagllaR 116
                 G a  +++ + +   +rna+a + ++   +++e   +     +++l a li+ l e l   eq+ la +++r  G+ ++++R
  EHT98634.1 196 GDAAQIVMGAGINLAMRNADAAQINQGWINLQEAGVT---LDRNDLAATLINRLrEALPVFEQEGLAPFVARwAGLDNFINR 274
                 4466666677777778888877666666665554333...356667777776661567778*********995689999887 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.34      15      56 ..       4      45 ..       1      52 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
                HSHHHHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHH CS
         Mga 15 eslkyqllkflfeeeevsieelaqelyiSestlkrkikelnk 56
                +s+ ++l++ l   e+ s e+l ++l +S++ ++++i+ l+ 
  EHT98634.1  4 HSVPLKLIDILSDGEFHSGEQLGETLGMSRAAINKHIQTLKS 45
                79999*********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2685.43
//
Query:       EHT98635.1  [L=315]
Description: pantothenate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-15   57.9   0.0    1.7e-15   57.3   0.0    1.3  1  PRK       Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.074   13.3   0.0       0.12   12.6   0.0    1.4  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   1.9e-19   1.7e-15       1     151 [.      89     243 ..      89     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.9e-19
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkeg.kkvdkpiYshetee 98 
                 +I++ags + Gk+t+ar l+ ++ r   +      ++++++d +++  ++ ++++  +k+     p+  d+  l + +  lk+g ++v+ p+Ysh   +
  EHT98635.1  89 IISIAGSVAVGKSTTARVLQALLSRWPEH----RKVELITTDGFLHPNSVLKERGLMKKK---GFPQSYDMHRLVKFVSDLKSGaQQVTAPVYSHLIYD 180
                 8***********************77766....7889999****9999999988877554...34999**************984689*********** PP

         PRK  99 aapdkeeliegadvlviEGlhalyder..........vaelldlkiyvdisidlelarklqRD 151
                   pd  ++++++d+l++EGl  l              v +++d++iyvd+ +dl   + ++R 
  EHT98635.1 181 VIPDGDKVVQQPDILILEGLNVLQSGMdyphdphhvfVSDFVDFSIYVDAEEDLLQHWYINRF 243
                 *******************986644334447799************************99995 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.12       6      70 ..      88     165 ..      84     223 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..........erpevv..fvtlpsst.sskdllrellralglelka 70 
                 +i+ + G + +GK+t++r l+  l +++++++          ++ +v+  +  +++++  ++  +++l++++ + +++
  EHT98635.1  88 YIISIAGSVAVGKSTTARVLQALLSRWPEHRKvelittdgflHPNSVLkeRGLMKKKGfPQSYDMHRLVKFVSDLKSG 165
                 68999************************9999999888887777776663333333323333356665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2342.98
//
Query:       EHT98636.1  [L=364]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-58  197.1   5.4    1.2e-57  195.6   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    9.3e-15   54.8   1.5    2.1e-14   53.6   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    4.9e-11   43.3   9.0    1.1e-10   42.2   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.015   14.8   1.0      0.021   14.4   1.0    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
      0.018   14.2   0.7      0.033   13.4   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.043   12.4   7.8      0.056   12.0   7.8    1.1  1  FUSC             Fusaric acid resistance protein family
      0.079   13.3   3.9       0.58   10.5   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
        0.1   12.6  10.2       0.17   11.9  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.11   11.6   0.4       0.17   11.1   0.4    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.14   12.0  10.1        0.2   11.4  10.1    1.1  1  ERM              Ezrin/radixin/moesin family
       0.14   11.8   2.6       0.49   10.1   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.4   0.7          5    7.5   0.2    2.3  2  DUF5347          Family of unknown function (DUF5347)
       0.16   12.1   1.7       0.66   10.1   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
       0.22   12.3   1.9       0.88   10.4   2.3    1.8  1  LCE6A            Late cornified envelope protein 6A family
       0.24   11.8   3.1       0.74   10.2   3.1    1.9  1  HHH_8            Helix-hairpin-helix domain
       0.28   10.9   7.3       0.43   10.3   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
        0.3   11.5   3.2       0.56   10.6   3.2    1.4  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.31   11.2   5.2       0.56   10.4   5.2    1.3  1  CREPT            Cell-cycle alteration and expression-elevate
       0.39   10.6   3.0       0.61    9.9   3.0    1.2  1  PCRF             PCRF domain
       0.46    9.7   2.7       0.65    9.2   2.7    1.1  1  TMPIT            TMPIT-like protein
        1.4    8.4   7.4        3.3    7.2   7.5    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        6.1    7.6   9.1        9.4    6.9   2.0    2.8  2  SlyX             SlyX
        6.8    7.0   8.5         10    6.4   8.5    1.2  1  OmpH             Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.2      0.09        70     167     221 ..      34      91 ..      20     121 .. 0.46
   2 !  195.6   0.1   1.5e-60   1.2e-57       2     168 ..     187     359 ..     186     364 .] 0.97

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.09
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98636.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 195.6 bits;  conditional E-value: 1.5e-60
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98636.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksq 168
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ ++
    EHT98636.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TD 359
                   ***********************************************999********************9987.44 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   1.5   2.7e-17   2.1e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 2.7e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98636.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   9.0   1.4e-13   1.1e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98636.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.0   2.7e-05     0.021     144     233 ..      10     101 ..       3     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerlk 233
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l 
    EHT98636.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPALP 101
                   334444455555555666666677789999999999888866554399999*************************999554431...2222222 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   4.3e-05     0.033      47     106 ..      34      90 ..      24     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98636.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   7.8   7.2e-05     0.056     213     295 ..       4      92 ..       1     124 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.2e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98636.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996677888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00075      0.58      22      56 ..      23      57 ..      15      71 .. 0.81
   2 ?    3.4   0.5      0.12        95      33      53 ..      71      91 ..      66      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00075
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT98636.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.12
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98636.1 71 ARQVREAEERISALQEEMAEV 91
                5789999999******99986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  10.2   0.00022      0.17      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98636.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00021      0.17      24      77 ..      37      92 ..      29     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98636.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.1   0.00026       0.2      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98636.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00063      0.49     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.0   0.2      0.18   1.4e+02      97     130 ..      63      96 ..      61     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00063
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT98636.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98636.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5678888888999999999999999999887655 PP

>> DUF5347  Family of unknown function (DUF5347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0065         5      65      96 ..      23      54 ..       2      58 .. 0.85
   2 ?    3.1   0.0      0.15   1.1e+02      36      77 ..      64     106 ..      53     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0065
     DUF5347 65 erhelkfeeltseekialikAlnklkavvsll 96
                 r+ +++++l s+  +a  +A+n+lka+v+ l
  EHT98636.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKL 54
                47889***********************9865 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.15
     DUF5347  36 kemRdkrdekykenkrvlsaif.yLAeiekerhelkfeeltse 77 
                 +++R+k+ ++++e +  +sa+   +Ae+  e+h+ ++ +l ++
  EHT98636.1  64 EKLREKTARQVREAEERISALQeEMAEVLGEQHDPALPQLLRQ 106
                 689********9987666666527*********9999998776 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00085      0.66      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?    0.1   0.1       1.1   8.8e+02       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00085
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98636.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98636.1 167 ACCSCDHI 174
                  35555555 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.3    0.0011      0.88      17      71 ..     115     172 ..     101     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
       LCE6A  17 cspPkrknpslapcsapCgasc....sgGCsstsqrpraqkpvssrrahrkkprCLsGd 71 
                  s+P r+ ++l+p  ++C+a      + GC+ ++q   + ++    + +r+k+ C s d
  EHT98636.1 115 ASLP-RETLTLSPAETTCPACGgelnALGCDVSEQLELISSAFKVIETQRPKLACCSCD 172
                 3566.56789999999999877777788*******99999999999*********9876 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.1   0.00095      0.74       9      65 ..      24      76 ..      20      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00095
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT98636.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555555555555 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   7.3   0.00055      0.43     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00055
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98636.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.2   0.00071      0.56      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00071
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHT98636.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.2   0.00072      0.56      44     141 ..      10     115 ..       6     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00072
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHT98636.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHT98636.1 109 ARKPLPA 115
                 9999996 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.0   0.00078      0.61      19      96 ..      18      96 ..       6     103 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00078
                TTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTT.HHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSS CS
        PCRF 19 edqekakklskelaeleeivealeeleealed.leeakell..eedeelaelaeeeleelekeleeleeelkklLlpkden 96
                e+q++++k+++  + l++ v+a+ ++ ++l+  +++++++   ++ e+l+e    +++e+e+++++l+ee+ ++L   +++
  EHT98636.1 18 EQQTTIRKMAEYNRLLSQRVAAYASAINRLKAlVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLG--EQH 96
                33444444444444455555555443333333034444454323778999999999******************99..443 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.7   0.00083      0.65      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00083
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98636.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666777777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.5    0.0043       3.3      70     153 ..      13      98 ..       2     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0043
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98636.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   455666666666666666666677778888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.0     0.012       9.4      22      53 ..      12      43 ..       7      58 .. 0.87
   2 ?    3.1   1.9      0.19   1.5e+02      34      57 ..      68      91 ..      42     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98636.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                777899********************887665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.19
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98636.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.5     0.013        10      10      86 ..      15      95 ..      10     109 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a++++  + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT98636.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777788889999999999999999999999999999965555.23456666666668888888877544444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1380  (0.0769703); expected 358.6 (0.02)
Passed bias filter:                      900  (0.050198); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2467.82
//
Query:       EHT98637.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98637.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 901.98
//
Query:       EHT98638.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98638.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98638.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98638.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98638.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 886.21
//
Query:       EHT98639.1  [L=398]
Description: putative protoheme IX synthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-33  113.1   2.7    6.9e-33  113.1   2.7    3.8  4  HemY_N           HemY protein N-terminus
    9.8e-06   25.3   0.9      0.026   14.5   0.3    3.4  2  TPR_7            Tetratricopeptide repeat
      1e-05   25.9  30.2      0.015   16.1   2.9    7.3  7  TPR_14           Tetratricopeptide repeat
      4e-05   23.4   0.3      4e-05   23.4   0.3    4.8  4  TPR_2            Tetratricopeptide repeat
    0.00048   19.8   1.0     0.0095   15.7   0.0    3.2  3  TPR_1            Tetratricopeptide repeat
      0.002   18.7   7.0      0.002   18.7   7.0    4.3  4  TPR_16           Tetratricopeptide repeat
     0.0035   17.8  20.9       0.06   13.9   1.9    5.0  5  TPR_19           Tetratricopeptide repeat
     0.0076   16.4  17.6      0.011   15.9   2.0    4.1  3  TPR_9            Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.03   14.6   1.5       0.03   14.6   1.5    4.0  4  TPR_12           Tetratricopeptide repeat
      0.041   13.4   1.6       0.07   12.6   1.6    1.4  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
      0.043   13.5   0.3       0.11   12.2   0.3    1.8  1  TPR_11           TPR repeat
      0.076   12.7   1.2       0.13   12.0   1.2    1.4  1  NrsF             Negative regulator of sigma F
      0.077   13.0   4.6        4.8    7.2   0.8    2.5  2  OppC_N           N-terminal TM domain of oligopeptide transpo
        0.1   13.6   1.8       0.19   12.7   0.0    2.2  2  DUF4834          Domain of unknown function (DUF4834)
       0.12   12.0   5.2       0.19   11.4   5.2    1.3  1  BPD_transp_1     Binding-protein-dependent transport system i
        3.4    7.6   9.5         14    5.5   0.4    3.2  3  Wzy_C_2          Virulence factor membrane-bound polymerase, 
        4.5    8.1  10.8       0.61   10.8   0.2    4.1  3  TPR_6            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   2.7   6.5e-36   6.9e-33       1     107 []      26     132 ..      26     132 .. 0.99
   2 ?   -0.2   0.0       1.1   1.1e+03      73      91 ..     132     150 ..     130     169 .. 0.80
   3 ?   -2.4   0.0         5   5.3e+03      47      67 ..     248     269 ..     238     276 .. 0.60
   4 ?    5.3   1.4     0.021        22      64      90 ..     333     359 ..     297     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 6.5e-36
      HemY_N   1 GyVliawggyrietslvvavlllvllfvllylllrllrlllrlparvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklseapllaylla 99 
                 GyVli+++++++ets++ ++++l++ +++++++++llr+l+r+ ar+r w+  r++r+a+++++++l++laeGdf++ ek+++k a++++ p+ +ylla
  EHT98639.1  26 GYVLIQTDNWNVETSVTGLAIILIISLLVILAVEWLLRRLFRTGARTRGWFTGRKRRRAQRQTQNALLKLAEGDFRQVEKLLSKDADHADVPVANYLLA 124
                 9************************************************************************************************** PP

      HemY_N 100 AqAaqaqg 107
                 A+Aaq++g
  EHT98639.1 125 AEAAQQRG 132
                 *****997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      HemY_N  73 GdfarAekaaakaaklsea 91 
                 Gd  rA +++ +aa+l+ +
  EHT98639.1 132 GDEMRANQHLERAAELAGN 150
                 8888999999999999876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5
      HemY_N  47 vrrwrrrrrer.karealseGl 67 
                 ++rw+++  ++ + ++ l+ ++
  EHT98639.1 248 LKRWWGNLSRKtRHETSLQVAM 269
                 5666665444404444444455 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.021
      HemY_N  64 seGlialaeGdfarAekaaakaaklse 90 
                 + G + + +G++++A +a+++a+++ +
  EHT98639.1 333 TLGQLLMRHGEWQQAAEALQQALAQRP 359
                 56889999**************98875 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3   2.5e-05     0.026       3      32 ..     332     359 ..     330     360 .. 0.87
   2 !    7.1   0.0    0.0058       6.1       5      28 ..     367     388 ..     367     397 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 + L++l  r G++++A+e ++q  al+ +p
  EHT98639.1 332 STLGQLLMRHGEWQQAAEALQQ--ALAQRP 359
                 569*******************..777666 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0058
       TPR_7   5 LarlysrlGdyeeAielyeqsLal 28 
                 La++y rl++ e+A++  ++  +l
  EHT98639.1 367 LADVYDRLRRPEDAAKMRRE--GL 388
                 8***************9999..33 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       4.9   5.2e+03      11      24 ..      94     107 ..      83     116 .. 0.72
   2 ?    2.4   3.5      0.35   3.7e+02       4      34 ..     121     151 ..     117     167 .. 0.80
   3 ?    3.3   0.2      0.17   1.8e+02      10      40 ..     162     192 ..     155     195 .. 0.83
   4 !    7.2   0.0    0.0097        10       4      40 ..     266     302 ..     264     302 .. 0.88
   5 ?    6.8   0.0     0.014        14      13      41 ..     306     334 ..     304     336 .. 0.85
   6 !   16.1   2.9   1.4e-05     0.015       4      39 ..     331     367 ..     328     368 .. 0.83
   7 ?    6.7   0.5     0.015        16       4      28 ..     364     388 ..     361     398 .] 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.9
      TPR_14  11 llalGdpdeAiall 24 
                  la Gd+++ ++ll
  EHT98639.1  94 KLAEGDFRQVEKLL 107
                 45667777777766 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.35
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdd 34 
                 +l++aea  ++Gd  +A ++l+ra +la +d
  EHT98639.1 121 YLLAAEAAQQRGDEMRANQHLERAAELAGND 151
                 6778999999999999********9999887 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.17
      TPR_14  10 allalGdpdeAiallrralalaPddaeawll 40 
                 + la+ +  +A+   +r+l+ aP ++e+++l
  EHT98639.1 162 IQLARHEDHAARHSIDRLLEVAPRHPEVLRL 192
                 55677777789999***********999875 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0097
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawll 40 
                 + a+ + l + +d+d+A ++l + l+++ dd+ ++l+
  EHT98639.1 266 QVAMIDHLIECDDHDTAQEILLDGLKRHYDDRLVLLM 302
                 5678889999******************999988775 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.014
      TPR_14  13 alGdpdeAiallrralalaPddaeawlll 41 
                  +G+p++ +++lr+ ++++ + + ++  l
  EHT98639.1 306 KSGNPEALEKALRQQIKQHGATPLLHSTL 334
                 68*****************9988877555 PP

  == domain 6  score: 16.1 bits;  conditional E-value: 1.4e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaP.ddaeawl 39 
                 +  l+++l++ G++++A+++l++ala+ P +++ awl
  EHT98639.1 331 HSTLGQLLMRHGEWQQAAEALQQALAQRPyAFDYAWL 367
                 5679*************************33455665 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.015
      TPR_14   4 llalaeallalGdpdeAiallrral 28 
                 ++ la+++ +l++p++A+++ r+ l
  EHT98639.1 364 YAWLADVYDRLRRPEDAAKMRREGL 388
                 6789***************977765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.7      0.24   2.5e+02       8      33 ..     125     150 ..     119     151 .. 0.71
   2 ?   -1.3   0.0       3.2   3.4e+03      19      34 .]     171     186 ..     163     186 .. 0.85
   3 !   23.4   0.3   3.8e-08     4e-05       2      32 ..     329     359 ..     328     361 .. 0.93
   4 ?    5.6   0.0     0.019        20       3      22 ..     363     382 ..     361     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
       TPR_2   8 GlayyklgdyeeAleafekAleldPn 33 
                 ++a+ ++gd  +A +++e+A el+ n
  EHT98639.1 125 AEAAQQRGDEMRANQHLERAAELAGN 150
                 66677777777788888888888766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.2
       TPR_2  19 eAleafekAleldPnn 34 
                  A++  ++ le +P++
  EHT98639.1 171 AARHSIDRLLEVAPRH 186
                 6999999****99986 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 3.8e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                  ++  lG+++++ g++++A+ea+++Al+  P
  EHT98639.1 329 LLHSTLGQLLMRHGEWQQAAEALQQALAQRP 359
                 6799***********************9988 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.019
       TPR_2   3 alynlGlayyklgdyeeAle 22 
                  + +l+++y +l ++e+A++
  EHT98639.1 363 DYAWLADVYDRLRRPEDAAK 382
                 5889**************87 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.1   4.4e+03      22      33 ..     139     150 ..     125     151 .. 0.68
   2 !   15.7   0.0     9e-06    0.0095       4      32 ..     331     359 ..     328     360 .. 0.92
   3 ?    0.8   0.0      0.48   5.1e+02       5      22 ..     365     382 ..     363     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.1
                 HHHHHHHHHSTT CS
       TPR_1  22 eyyekALelnPn 33 
                 ++ e+A el  n
  EHT98639.1 139 QHLERAAELAGN 150
                 789999998766 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnP 32 
                 +  lG+++++ g++++A e+ ++AL  +P
  EHT98639.1 331 HSTLGQLLMRHGEWQQAAEALQQALAQRP 359
                 778**********************9988 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.48
                 HHHHHHHHHTT-HHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAle 22 
                   l+ +y +l ++++A +
  EHT98639.1 365 AWLADVYDRLRRPEDAAK 382
                 56999**********975 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   2.8      0.41   4.4e+02       2      29 ..     123     150 ..     122     168 .. 0.88
   2 ?    2.8   0.2      0.18   1.9e+02      15      38 ..     171     191 ..     161     205 .. 0.78
   3 ?   -2.4   0.0       7.5   7.9e+03       9      31 ..     306     328 ..     304     331 .. 0.65
   4 !   18.7   7.0   1.9e-06     0.002       3      54 ..     334     381 ..     332     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.41
      TPR_16   2 alaraalragdyddAaaaleaalkrdps 29 
                  +a aa ++gd  +A   le+a ++++ 
  EHT98639.1 123 LAAEAAQQRGDEMRANQHLERAAELAGN 150
                 6899******************998865 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      TPR_16  15 dAaaaleaalkrdpssPdaaeAll 38 
                 +A++  +++l+ +   P+++e l 
  EHT98639.1 171 AARHSIDRLLEVA---PRHPEVLR 191
                 799**********...66655554 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 7.5
      TPR_16   9 ragdyddAaaaleaalkrdpssP 31 
                 ++g++++ ++al++ +k+++ +P
  EHT98639.1 306 KSGNPEALEKALRQQIKQHGATP 328
                 56666666677777777776666 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 1.9e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 l+++++r+g++++Aa+al++al+++   P a + + +l+d++ r+ r ++Aa
  EHT98639.1 334 LGQLLMRHGEWQQAAEALQQALAQR---PYAFD-YAWLADVYDRLRRPEDAA 381
                 89***********************...64444.6789************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.8     0.035        37       2      58 ..      95     151 ..      94     154 .. 0.90
   2 ?    4.0   0.8     0.068        72       9      65 ..     136     193 ..     130     197 .. 0.74
   3 ?    4.4   0.0      0.05        52      26      59 ..     264     297 ..     254     306 .. 0.84
   4 !   11.5   2.6   0.00032      0.33       9      56 ..     312     359 ..     304     365 .. 0.81
   5 !   13.9   1.9   5.7e-05      0.06       1      46 [.     338     382 ..     338     384 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.035
      TPR_19   2 laegdyaeAlalleqalqedpknaearllL.AeallalgqldeAealLdalpeedpdd 58 
                 laegd+ +  +ll++  ++ ++ + a +lL Aea  + g+   A + L+++ e + +d
  EHT98639.1  95 LAEGDFRQVEKLLSK-DADHADVPVANYLLaAEAAQQRGDEMRANQHLERAAELAGND 151
                 89*************.788888899999888*******************99988875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.068
      TPR_19   9 eAlalleqalqedpknaearl..lLAeallalgqldeAealLdalpeedpddaryasLl 65 
                 +A ++le+a + + + + +       +++la  +  +A+  +d+l+e +p ++++ +L 
  EHT98639.1 136 RANQHLERAAELAGN-DVIPVeiTRTRIQLARHEDHAARHSIDRLLEVAPRHPEVLRLA 193
                 688999998555444.444441155889999999999**************99998875 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.05
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpdda 59 
                  ++ ++++ l++  + d A+++L + ++   dd 
  EHT98639.1 264 SLQVAMIDHLIECDDHDTAQEILLDGLKRHYDDR 297
                 57788999*******************9999954 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00032
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +  ++l+q +++    + +   L ++l+  g++++A ++L++++++ p
  EHT98639.1 312 ALEKALRQQIKQHGATPLLHSTLGQLLMRHGEWQQAAEALQQALAQRP 359
                 445667776777888999999**********************99987 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 5.7e-05
      TPR_19   1 llaegdyaeAlalleqalqedpk.naearllLAeallalgqldeAea 46 
                 l+  g  ++A+++l+qal++ p   ++a+l  A+++  l ++++A +
  EHT98639.1 338 LMRHGEWQQAAEALQQALAQRPYaFDYAWL--ADVYDRLRRPEDAAK 382
                 577899****************97777777..*************76 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.0      0.18   1.8e+02      35      62 ..     124     151 ..     114     165 .. 0.77
   2 !    6.6   1.2     0.008       8.4      12      42 ..     170     200 ..     160     210 .. 0.71
   3 !   15.9   2.0     1e-05     0.011      29      62 ..     328     361 ..     323     386 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.18
       TPR_9  35 RGlllaqlGclsaAladLeaylalapda 62 
                  + + +q+G+   A + Le++++la+++
  EHT98639.1 124 AAEAAQQRGDEMRANQHLERAAELAGND 151
                 688999****************999844 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.008
       TPR_9  12 eralavverllllaPddpeerrdRGlllaql 42 
                  +a   ++rll +aP++pe +r   +++ + 
  EHT98639.1 170 HAARHSIDRLLEVAPRHPEVLRLAEQAYIRT 200
                 3567789999999999999888666666655 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 1e-05
       TPR_9  29 peerrdRGlllaqlGclsaAladLeaylalapda 62 
                 p ++   G+ll++ G +++A+++L+++la+ p a
  EHT98639.1 328 PLLHSTLGQLLMRHGEWQQAAEALQQALAQRPYA 361
                 5666778************************954 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.0     0.068        72      48      74 ..     121     147 ..      89     151 .. 0.64
   2 ?   -2.5   0.0       6.4   6.8e+03      17      26 ..     277     286 ..     265     293 .. 0.63
   3 ?   14.6   1.5   2.8e-05      0.03      26      74 ..     313     357 ..     311     359 .. 0.84
   4 ?    1.7   0.1      0.31   3.2e+02      51      67 ..     367     383 ..     364     390 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.068
      TPR_12  48 lrnLgrlyralgryeeAlelleealai 74 
                 +   +++ +++g+   A ++le+a ++
  EHT98639.1 121 YLLAAEAAQQRGDEMRANQHLERAAEL 147
                 333333445666666666666666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.4
      TPR_12  17 grydeAlell 26 
                  ++d A+e+l
  EHT98639.1 277 DDHDTAQEIL 286
                 5666666655 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.8e-05
      TPR_12  26 lekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 lekal+++  +  ++h +t     +Lg+l+ + g++++A e+l++ala 
  EHT98639.1 313 LEKALRQQ--I--KQHGATPLLHSTLGQLLMRHGEWQQAAEALQQALAQ 357
                 66666666..4..778889999********9****************96 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.31
      TPR_12  51 LgrlyralgryeeAlel 67 
                 L+++y++l r+e+A ++
  EHT98639.1 367 LADVYDRLRRPEDAAKM 383
                 78888888888888766 PP

>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.6   6.7e-05      0.07     118     194 ..       4      85 ..       1     120 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-05
  LPG_synthase_TM 118 lldllalvllgllallllggllaegaa.....vllllalallllavlalllllllrrrlarlarvlkrlarllarfarklas 194
                      ++ l++l+++g+++ +++ g+ ++         + + + +l++++++ ll++l++ + l+rl r   r ++++   +r++a 
       EHT98639.1   4 VFILFVLLIAGIVLGPMIAGHQGYVLIqtdnwNVETSVTGLAIILIISLLVILAVEWLLRRLFRTGARTRGWFTGRKRRRAQ 85 
                      4556666666666666666666666559998867777777888888888888888888888888888888876544433333 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00011      0.11       1      29 [.     335     363 ..     335     374 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnae 29 
                 G++++  G++ +A ea+++Al+ +P   +
  EHT98639.1 335 GQLLMRHGEWQQAAEALQQALAQRPYAFD 363
                 7889999****************996655 PP

>> NrsF  Negative regulator of sigma F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   0.00012      0.13     111     156 ..      33      78 ..       1      79 [. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
        NrsF 111 alllgetwrvCllaivllslpllaallwalRrlAptrprlaGaaaG 156
                 + +  et+ + l+ i+++sl++++a+ w lRrl  t  r+ G+++G
  EHT98639.1  33 DNWNVETSVTGLAIILIISLLVILAVEWLLRRLFRTGARTRGWFTG 78 
                 344556777899***************************9999987 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0068       7.2      22      39 ..       5      24 ..       3      36 .. 0.69
   2 ?    7.2   0.8    0.0045       4.8      16      36 ..      40      61 ..      38      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0068
      OppC_N 22 illllllia..ifaPliaPy 39
                ++l++llia  +++P+ia +
  EHT98639.1  5 FILFVLLIAgiVLGPMIAGH 24
                6666666665588****965 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0045
      OppC_N 16 Avvglvilllllliaifa.Pli 36
                 v gl+i+l++ l++i+a +++
  EHT98639.1 40 SVTGLAIILIISLLVILAvEWL 61
                589*************986776 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.1       4.7     5e+03       6      18 ..       5      18 ..       1      25 [. 0.56
   2 ?   12.7   0.0   0.00018      0.19       9      52 ..      45      88 ..      40     144 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.7
     DUF4834  6 fi.lifiiailvig 18
                fi ++++ia +v+g
  EHT98639.1  5 FIlFVLLIAGIVLG 18
                34355566666655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00018
     DUF4834  9 ifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstns 52
                 +i++i ++++  + ++lr++f +g r+++  +  k+++ ++++
  EHT98639.1 45 AIILIISLLVILAVEWLLRRLFRTGARTRGWFTGRKRRRAQRQT 88
                57889999999999*************99983222222222221 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.2   0.00018      0.19     115     179 ..       5      65 ..       1      68 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  BPD_transp_1 115 ilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   ++ f++l+ g vl  ++++    g++l+++ +++  ++ +  g+++++i+ ll++l++ +l r l
    EHT98639.1   5 FILFVLLIAGIVLGPMIAGH--QGYVLIQTDNWNVETSVT--GLAIILIISLLVILAVEWLLRRL 65 
                   678999************77..5**************999..99999999999999999998877 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.18   1.9e+02      24     110 ..       8     103 ..       4     110 .. 0.57
   2 ?    5.5   0.4     0.014        14     147     170 ..     122     145 ..     117     151 .. 0.87
   3 ?    4.6   0.5     0.025        27     122     168 ..     340     386 ..     317     390 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.18
     Wzy_C_2  24 pfllaaflvlgllds......ksrsrrlrlrpklvlrvvalvlallglalllsilhdyqrleqlyl...tsepneaalrevtnpkvwkdrflfray 110
                 ++ll+a++vlg +          ++ ++++ + ++ ++  l++ ll+++++ ++l+   r  +  +   t ++++ a r+ +n+++   + +fr+ 
  EHT98639.1   8 FVLLIAGIVLGPMIAghqgyvLIQTDNWNVETSVTGLAIILIISLLVILAVEWLLRRLFRTGARTRgwfTGRKRRRAQRQTQNALLKLAEGDFRQV 103
                 455666666643333578877667777777777777777777777777776666665554444433111344444555555555555555666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.014
     Wzy_C_2 147 erlilslallGdedeAeqilarar 170
                    ++++++ Gde +A q+l+ra 
  EHT98639.1 122 LLAAEAAQQRGDEMRANQHLERAA 145
                 56799*****************97 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.025
     Wzy_C_2 122 spenlaaklalarklihlsPepavierlilslallGdedeAeqilar 168
                      ++  ++ +++++  P++  ++ l++ +  l ++++A++++++
  EHT98639.1 340 RHGEWQQAAEALQQALAQRPYAFDYAWLADVYDRLRRPEDAAKMRRE 386
                 55677899999********************************9987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.0      0.79   8.4e+02       3      27 ..     121     145 ..     119     150 .. 0.84
   2 ?   10.8   0.2   0.00058      0.61       6      31 ..     334     359 ..     333     359 .. 0.88
   3 ?   -0.8   0.1       2.9   3.1e+03       5      21 ..     366     382 ..     364     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.79
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                 ++++a++ ++ gd  +A + ler  
  EHT98639.1 121 YLLAAEAAQQRGDEMRANQHLERAA 145
                 5778899999889999*99999976 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 l++++ + g++++A eal++ + + P
  EHT98639.1 334 LGQLLMRHGEWQQAAEALQQALAQRP 359
                 688888878************99887 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAle 21 
                 +la  y +l ++++A +
  EHT98639.1 366 WLADVYDRLRRPEDAAK 382
                 79999**9889998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      765  (0.0426683); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 3304.01
//
Query:       EHT98640.1  [L=377]
Description: putative uroporphyrinogen III methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.1e-134  446.8  29.1     6e-134  446.6  29.1    1.0  1  HemX            HemX, putative uroporphyrinogen-III C-methylt
    0.00072   18.3   0.5     0.0015   17.3   0.5    1.5  1  Tweety          Tweety
     0.0011   18.9   6.9     0.0016   18.5   4.7    2.3  2  DUF1664         Protein of unknown function (DUF1664)
     0.0031   17.5   4.3     0.0095   15.9   4.3    1.9  1  DUF1043         Protein of unknown function (DUF1043)
  ------ inclusion threshold ------
      0.016   15.1   6.3      0.017   15.0   4.7    1.8  2  Sigma70_ner     Sigma-70, non-essential region
      0.039   14.3  11.9      0.026   14.8   8.4    2.1  2  RskA            Anti-sigma-K factor rskA
       0.15   11.9   4.9      0.057   13.3   1.6    1.8  2  VIT1            VIT family
       0.17   11.4   1.6       0.25   10.8   1.6    1.2  1  Cytadhesin_P30  Cytadhesin P30/P32
       0.24   10.7   1.7        0.5    9.7   0.3    2.0  2  DUF3810         Protein of unknown function (DUF3810)
       0.35   11.2   3.4       0.39   11.0   0.6    2.6  3  Utp12           Dip2/Utp12 Family
       0.39   10.7   4.5        1.1    9.3   4.5    1.7  1  TnpV            Transposon-encoded protein TnpV
       0.49   10.3   7.6       0.12   12.3   3.6    2.0  2  DUF3819         Domain of unknown function (DUF3819)
          1    9.6   5.8       0.72   10.1   2.2    2.5  2  DUF948          Bacterial protein of unknown function (DUF948
        1.6    8.0  12.9      0.093   12.1   7.6    1.7  2  DUF4407         Domain of unknown function (DUF4407)
        2.3    6.9   9.6       0.53    9.0   5.9    1.6  2  BshC            Bacillithiol biosynthesis BshC
        2.5    8.1   5.6       0.59   10.2   0.1    2.3  2  DUF4366         Domain of unknown function (DUF4366)
        3.1    7.8  18.9      0.064   13.3   4.8    2.8  3  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
        3.9    6.6  10.0       0.72    9.0   6.3    1.6  2  TMPIT           TMPIT-like protein
        4.6    7.2  11.1         23    4.9   0.2    3.4  3  Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain o
        7.1    6.2  12.2        1.3    8.5   7.7    2.0  3  Fzo_mitofusin   fzo-like conserved region
        8.7    4.7  14.2       0.24    9.9   3.9    2.2  2  FUSC            Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.6  29.1    7e-137    6e-134       1     337 [.      33     363 ..      33     364 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.6 bits;  conditional E-value: 7e-137
        HemX   1 kkrgsglallallvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskv 99 
                 k++g +l+++a+++ala+gagly   ++q++ + +++++l++qla+l+qq+++      +kq+l+++l +++++le++++++++ +k+l++l+++l+ +
  EHT98640.1  33 KNGGMVLGAVAIVIALAIGAGLYLNDKHQAELQAQTNQSLSEQLAKLQQQANS------DKQQLSQQLSTTEKTLETAQAQQAASEKALQALREKLASI 125
                 5799*************************98888889****************......**************************************** PP

        HemX 100 sgaerkdWlLaeAdfLlklAgrkLvldqDvetAlalLksADevLaevndpsllavRralaedlkaLravnqvDrdgiilrLeqLanqvdeLpladneld 198
                 sg++ ++Wl+a+Ad+L+klAgrkL++dqDv+tA+alLksAD++La++ndps+++vRral++d+++L+a++qvD+dgiil+L+qL+n+vd+L+ladn++d
  EHT98640.1 126 SGNDVRSWLVAQADYLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSVMNVRRALTQDISTLSAISQVDYDGIILKLNQLSNNVDNLRLADNDSD 224
                 *************************************************************************************************** PP

        HemX 199 eapsdadnaelsdslsdWkqnleksaksflshfirirrrdksakplLaPnqdiylrenirlrLeiAilAvlrqqnelYkqsLeevstwvrsyFdtddea 297
                 +ap+d+dn+els s+++W+qnl ks+++f+++fi+irrrd++a+plLaPnqd+ylrenir+rL+iA++Av+r+q+e+YkqsLe+vstwvr+++dt+d++
  EHT98640.1 225 DAPMDSDNGELSGSIREWRQNLVKSWHNFMDDFITIRRRDNTAQPLLAPNQDVYLRENIRSRLLIAAQAVPRHQEEIYKQSLETVSTWVRAWYDTNDAS 323
                 *************************************************************************************************** PP

        HemX 298 vkaflkeldeLaeqsvsvdvPdklkslslLekllekrare 337
                 +kafl++ldeL++q +++d+Pd l+s++lLe+l+++r+r+
  EHT98640.1 324 TKAFLAQLDELSQQDINMDLPDSLESQPLLEQLMQTRVRN 363
                 *************************************997 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.5   1.8e-06    0.0015      66     155 ..      39     126 ..      23     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
      Tweety  66 vviatlvccaaigvGfYGNsetndGvlqltyslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevv 155
                 + ++++v++ aig G+Y N+  +  ++    + ++  + la ++++ ++ +++l+++l+++ ++le+  a+++   ++l++++e++ ++ 
  EHT98640.1  39 LGAVAIVIALAIGAGLYLNDKHQAELQAQ--TNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASEKALQALREKLASIS 126
                 5567889999*********9988877643..44667789*****************************************9999988775 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   4.7   1.8e-06    0.0016      42     101 ..      68     127 ..      62     138 .. 0.91
   2 ?   -1.3   0.0       2.5   2.1e+03      56      72 ..     176     192 ..     162     220 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.8e-06
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseige 101
                   +s+s+ql +++++ ++ k++Ls+++ + +k+l+  ++ +++ ++ ++++re+l++i+ 
  EHT98640.1  68 TNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASEKALQALREKLASISG 127
                 56899***************************************************9964 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
     DUF1664  56 slaatkrhLssridrvd 72 
                 s+ +++r L+++i ++ 
  EHT98640.1 176 SVMNVRRALTQDISTLS 192
                 55666777777776664 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.3   1.1e-05    0.0095       4      79 ..      43     122 ..      41     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
     DUF1043   4 glvvGiiiGalilrltnsk....lkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL 79 
                 ++v+++ iGa ++   + +    ++++++l ++l k +++ +  kq+l++ ++++ + Let + +     + l+   e+L
  EHT98640.1  43 AIVIALAIGAGLYLNDKHQaelqAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASEKALQALREKL 122
                 4555555555544433333112266778999999***************************9998887777777777777 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.7     2e-05     0.017      54     115 ..      64     125 ..      55     137 .. 0.90
   2 ?   -3.3   0.0       8.1   6.9e+03     120     120 ..     221     221 ..     202     254 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-05
  Sigma70_ner  54 ddeeeseseaadeeelkeealekfeelreqyeklrkalkkkgrkskkyekareelseefkef 115
                   ++++++s+++++++l+++a    ++l++q+ +++k+l++ +++++++eka+++l e+++++
   EHT98640.1  64 LQAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASEKALQALREKLASI 125
                  337899****************************************************9987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.1
  Sigma70_ner 120 k 120
                  +
   EHT98640.1 221 N 221
                  1 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   8.4   3.1e-05     0.026      17     124 ..      13     135 ..       4     145 .. 0.59
   2 ?    2.6   3.6      0.17   1.5e+02       6      86 ..      87     181 ..      87     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-05
                 .............................XXXXXXXXXXXXXX..........................XXXXXXXXXXXXXXX.XXXXXXXX.XXXXX CS
        RskA  17 pqaaaaaaaaaaapppaaapaararr...laaaaAaalllvlg................qlavasaaldplrqsaaqaeavvav.laapdaagatatvv 95 
                 ++++a +++a+ +++p+++++    +   +++a+A +++l++g                +++++s++l++l+q+a++++++++  l+ ++++  ta + 
  EHT98640.1  13 ETTPAVDRDASLQEQPPRKQK----NggmVLGAVAIVIALAIGaglylndkhqaelqaqTNQSLSEQLAKLQQQANSDKQQLSQqLSTTEKTLETAQAQ 107
                 333444444444444433333....13449999999999999999******999998887777777777777777775555544144443333444444 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RskA  96 dsasggalvldvsglpalpagkvyqlWli 124
                  +as++al    + l a  +g + + Wl+
  EHT98640.1 108 QAASEKALQALREKL-ASISGNDVRSWLV 135
                 444444444444444.4445666666666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.17
                 HHHHHHTT-X....................................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXX.....X CS
        RskA   6 warilaalaatpqaaaaaaaaaaapppaaapaararr.........laaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaap.....d 86 
                 ++++ ++l++t+ + ++a+a++aa  +a ++ +++ +         +++a A  l+ ++g++  + ++++++++   +a+a +a +++p      
  EHT98640.1  87 KQQLSQQLSTTEKTLETAQAQQAASEKALQALREKLAsisgndvrsWLVAQADYLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPsvmnvR 181
                 57788888888888888888888777777777776669999999999999999999888877778888888888888888888888888443330 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.6   6.7e-05     0.057      33     116 ..      37     117 ..      31     177 .. 0.71
   2 ?   -1.0   0.1       1.6   1.3e+03      71     114 ..     328     371 ..     309     375 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.7e-05
        VIT1  33 vllaGlaellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpe..egeaeelaeilearglseelaqevaaellknpdalle 116
                 ++l+++a ++A  +++g+G Yl  k + +l ++++++ +e+l++ ++  + ++++l++ l+  +   ++ ++  a+++++++al++
  EHT98640.1  37 MVLGAVAIVIA--LAIGAGLYLNDKHQAELQAQTNQSLSEQLAKLQQqaNSDKQQLSQQLSTTE---KTLETAQAQQAASEKALQA 117
                 56666666665..6679**************999999999999888533334566655555554...4444434455555555433 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
        VIT1  71 eeeleedpe.egeaeelaeilearglseelaqevaaellknpdal 114
                  ++l+e ++ +    +l + le++ l e+l q+ +++l+++p+a 
  EHT98640.1 328 LAQLDELSQqDI-NMDLPDSLESQPLLEQLMQTRVRNLMAQPSAA 371
                 444555554233.57899999999999999999999999999875 PP

>> Cytadhesin_P30  Cytadhesin P30/P32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.6    0.0003      0.25      67     136 ..      34     104 ..       3     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
  Cytadhesin_P30  67 aagaGlivlalllGlaiGlpiv.kkkekrlleekeeqeklveslqiieeqektealeaaeevnaeeev.epa 136
                      +g+ l ++a+++ laiG  +    k +  l+  + ++ l e+l ++++q +++  + +++  + e++ e a
      EHT98640.1  34 NGGMVLGAVAIVIALAIGAGLYlNDKHQAELQA-QTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTlETA 104
                     5778899999**999999887614455555665.56789*********998777666555544444331333 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00058       0.5      65     148 ..      37     127 ..      25     136 .. 0.76
   2 ?   -1.0   0.1         1   8.6e+02     240     284 ..     293     337 ..     285     344 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00058
     DUF3810  65 lvllvvyflftllwgl.nYyreplserlglkkeeyseeelaelaeklveklnelreqverde......eevrkeakkaykklgeeypllsg 148
                 +vl +v ++  l+ g  +Y + + + +l+ +++++ +e+la+l ++  ++ ++l++q++ +e      ++ +++++ka+++l e+   +sg
  EHT98640.1  37 MVLGAVAIVIALAIGAgLYLNDKHQAELQAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEktletaQAQQAASEKALQALREKLASISG 127
                 4566666666666665357777888888887777779999999999999999999998888888888766777778888888888777766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
     DUF3810 240 alykadeeayeellktispevledlkeereywekyegtveevsdk 284
                 a+ + +ee y++ l+t+s  v++ +  + +  +++ ++++e+s++
  EHT98640.1 293 AVPRHQEEIYKQSLETVSTWVRAWYDTNDASTKAFLAQLDELSQQ 337
                 455556677777777777777777777777777765556666554 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00046      0.39      60     103 ..      58     102 ..      33     106 .. 0.89
   2 ?   -2.8   0.0       9.1   7.8e+03      46      57 ..     304     315 ..     288     338 .. 0.69
   3 ?   -2.3   0.0       6.6   5.6e+03      55      71 ..     353     369 ..     343     374 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
                 HHHHHHHHHSH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12  60 rvHgsylvasps.dlvpaLrslqkslrerlktlskllglnlgrLd 103
                   H ++l+a+ + +l+++L++lq++ ++  ++ls+ l++   +L+
  EHT98640.1  58 DKHQAELQAQTNqSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLE 102
                 57**********9*******************9999998877776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.1
                 TTHHHHHHHHHH CS
       Utp12  46 phlelllrwlka 57 
                 + le++  w++a
  EHT98640.1 304 QSLETVSTWVRA 315
                 456666666655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.6
                 HHHHHHHHHHHHHHSH. CS
       Utp12  55 lkallrvHgsylvasps 71 
                 l++l+++  + l+a+ps
  EHT98640.1 353 LEQLMQTRVRNLMAQPS 369
                 56677777777777776 PP

>> TnpV  Transposon-encoded protein TnpV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.5    0.0013       1.1      34      89 ..      55     109 ..      53     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
        TnpV  34 yLkehkkvlYtelllsgkLnehlaeideqaeerlerlvkqlaekegvteelkakdq 89 
                 yL+++++++ +   +++ L e+la++++qa++  ++l +ql  +e+  e+ +a++ 
  EHT98640.1  55 YLNDKHQAELQ-AQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQA 109
                 67777777765.46899***************************999888877764 PP

>> DUF3819  Domain of unknown function (DUF3819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.6   0.00014      0.12      77     137 ..      62     124 ..      43     128 .. 0.83
   2 ?   -2.5   0.1       5.2   4.4e+03      74      89 ..     352     367 ..     326     375 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                 HHHHHHHHH-----.....-------.---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH CS
     DUF3819  77 esissnlrqllknal...tkqlkeqeleqaiqilvndNlelacaliekaaaekavreideklak 137
                 + ++++++q+l+++l   ++q ++++ +q+ q+l++    l +a  ++aa eka++ + ekla+
  EHT98640.1  62 AELQAQTNQSLSEQLaklQQQANSDK-QQLSQQLSTTEKTLETAQAQQAASEKALQALREKLAS 124
                 55677777777777654455555555.**********************************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.2
                 HHHHHHHHHHHH---- CS
     DUF3819  74 pLresissnlrqllkn 89 
                  L++ +++++r+l+++
  EHT98640.1 352 LLEQLMQTRVRNLMAQ 367
                 3455555555555555 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2   0.00085      0.72      24      79 ..      58     120 ..      37     128 .. 0.73
   2 ?   -0.7   0.1         2   1.7e+03      37      37 ..     193     193 ..     155     218 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00085
      DUF948  24 l.......kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79 
                         ++t +++++++++l++q+++  +++ + l++++++le  + + ++ ++  +a+++
  EHT98640.1  58 DkhqaelqAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASEKALQALRE 120
                 2566666789999**********************************9998887777777655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
      DUF948  37 e 37 
                  
  EHT98640.1 193 A 193
                 1 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   7.6   0.00011     0.093      86     211 ..      41     168 ..      23     216 .. 0.65
   2 ?   -2.4   0.2       2.7   2.3e+03     186     205 ..     318     337 ..     284     374 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
     DUF4407  86 llAvligvvisepleLk.iFekeIdaelaeeqqeeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaG 180
                 ++A++i++ i+  l L    + e++a+ ++  +e+ ++l++q +++   l+++l++ e+ ++ +qa+ +a e++l+alr+++++   ++  +   + a 
  EHT98640.1  41 AVAIVIALAIGAGLYLNdKHQAELQAQTNQSLSEQLAKLQQQANSDkqqLSQQLSTTEKTLETAQAQQAASEKALQALREKLASISGNDVRSWLVAQAD 139
                 778888888888887753567777777777777777777777666666677777777777777777777777777777777764433333333333444 PP

     DUF4407 181 kgpaakekkaqldaaqaelaelkakldatar 211
                 +      +k + d+  ++ a+l ++  a+a 
  EHT98640.1 140 YLVKLAGRKLWSDQDVTTAAALLKS--ADAS 168
                 4444444555555555555555555..4444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.7
     DUF4407 186 kekkaqldaaqaelaelkak 205
                 ++++a  +a  a+l+el+++
  EHT98640.1 318 DTNDASTKAFLAQLDELSQQ 337
                 22333333333333333333 PP

>> BshC  Bacillithiol biosynthesis BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.9   0.00062      0.53     410     476 ..      58     123 ..      53     135 .. 0.89
   2 ?   -1.9   0.1       1.2     1e+03      27      61 ..     313     345 ..     292     367 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00062
                 HHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHHHHHHH CS
        BshC 410 elkkklveeaseleldelfeeakeeleeafealkelaakidktleklveanekkilkqlekLekkll 476
                 ++ ++ ++++++++l+e++++ +++ ++  ++l +++++++ktle + +a+++  +k+l+ L++kl+
  EHT98640.1  58 DKHQAELQAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETA-QAQQAASEKALQALREKLA 123
                 5667788999*********************************9875.7888899*********997 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                 GGGT-SS-TTSTTHHHHHHHHHHTS---.HHHHHH CS
        BshC  27 lkkfyeyrfpkeeafekrieelkekskskreaLve 61 
                 ++++y+++  + +af ++++el++++ +    L +
  EHT98640.1 313 VRAWYDTNDASTKAFLAQLDELSQQDIN--MDLPD 345
                 6677777777777777777766666443..34444 PP

>> DUF4366  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00069      0.59      90     138 ..       7      56 ..       1      63 [. 0.52
   2 ?   -1.8   2.7       3.5     3e+03      85     104 ..      80      99 ..      57     126 .. 0.36

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00069
     DUF4366  90 tdcpveepepekeaepeepeeepekksnnglllvvlavaligg.gaayyf 138
                 t++ vee++p  + + + +e+ p k++n g++l  +a++++ + ga  y+
  EHT98640.1   7 TSAVVEETTPAVDRDASLQEQPPRKQKNGGMVLGAVAIVIALAiGAGLYL 56 
                 44444444444444444477777777776666655544444333665554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.5
     DUF4366  85 agkvntdcpv......eepepekeae 104
                 +++ n+d +       +      +++
  EHT98640.1  80 QQQANSDKQQlsqqlsT------TEK 99 
                 12222222112211110......111 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   4.8   7.5e-05     0.064      56     132 ..      63     139 ..      50     145 .. 0.89
   2 ?    3.3   1.9     0.091        78      58     104 ..     169     216 ..     151     220 .. 0.50
   3 ?   -1.9   0.1       3.5     3e+03      46      75 ..     305     334 ..     282     366 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-05
  Baculo_PEP_C  56 sllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldlgalsqeledald 132
                   +l a+ ++ l+++l++L+++ n+ +++l+++L ++++ l + +++ +  +++L+ l + l+++  + + ++l +++d
    EHT98640.1  63 ELQAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASEKALQALREKLASISGNDVRSWLVAQAD 139
                   4566778899999999999999999********************************************99987776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.091
  Baculo_PEP_C  58 laeldt.rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNi 104
                   la++++  + ++  +Lt+ + +l+   + + +++  +l++L ++v N+
    EHT98640.1 169 LADMNDpSVMNVRRALTQDISTLSAISQVDYDGIILKLNQLSNNVDNL 216
                   222222355555555555555555444455555555555555555544 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.5
  Baculo_PEP_C  46 qLnalsedlksllaeldtrldtlltnLtda 75 
                   +L+++s+ +++     d+  +++l++L++ 
    EHT98640.1 305 SLETVSTWVRAWYDTNDASTKAFLAQLDEL 334
                   455555555555555555555555555443 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.3   0.00084      0.72      14      80 ..      62     127 ..      55     146 .. 0.77
   2 ?   -2.5   0.1       2.8   2.4e+03      17      61 ..     298     342 ..     290     366 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00084
       TMPIT  14 leetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkk 80 
                  e +a++ ++ +e+l+klq++  ++ ++ +++l+  +++l++ +++ ++ +e++++ l+e+l++++ 
  EHT98640.1  62 AELQAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQ-QAASEKALQALREKLASISG 127
                 44445556778899*****************************999.57999999***999987654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
       TMPIT  17 takeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk 61 
                 +++ ykq+le++s+   ++  + +  +k   +  ++l++ + +++
  EHT98640.1 298 QEEIYKQSLETVSTWVRAWYDTNDASTKAFLAQLDELSQQDINMD 342
                 446788888888888888888877777776666666666555544 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.5     0.078        67      11      39 ..      74     102 ..      73     108 .. 0.82
   2 ?    4.9   0.2     0.027        23      17      35 ..     108     126 ..     102     128 .. 0.88
   3 ?   -0.2   0.0       1.1   9.6e+02      20      36 ..     177     196 ..     176     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.078
                     THHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil  11 EalvkFQtkVeseiqaLtqkLeavtkRle 39 
                     E l k+Q++++s+ q+L+q+L+   k le
      EHT98640.1  74 EQLAKLQQQANSDKQQLSQQLSTTEKTLE 102
                     56889***************987666555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.027
                     HHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil  17 QtkVeseiqaLtqkLeavt 35 
                     Q + e+++qaL +kL++++
      EHT98640.1 108 QAASEKALQALREKLASIS 126
                     6777899**********98 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
                     HHHHHHHHHH...HHHHHHH CS
  Matrilin_ccoil  20 VeseiqaLtq...kLeavtk 36 
                     V++  +aLtq   +L+a+++
      EHT98640.1 177 VMNVRRALTQdisTLSAISQ 196
                     55556788885555888875 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   7.7    0.0015       1.3      87     145 ..      60     122 ..      55     130 .. 0.76
   2 ?   -2.6   0.0       4.1   3.5e+03      95     129 ..     180     214 ..     167     223 .. 0.50
   3 ?   -3.2   0.0       6.3   5.4e+03      60      84 ..     319     343 ..     311     367 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
  Fzo_mitofusin  87 tsancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkka....kllrnka 145
                    + a+++ q +q ls+ +a+l+qq +  +++l++++++ ek++e+ ++ q  +    ++lr+k 
     EHT98640.1  60 HQAELQAQTNQSLSEQLAKLQQQANSDKQQLSQQLSTTEKTLETAQAQQAASekalQALREKL 122
                    567889999**************************9999988877666544311114555554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.1
  Fzo_mitofusin  95 vqqelsstfarlcqqvdetekeleeeikelekeie 129
                    v++ l++ ++ l++ ++   + +  ++++l+++++
     EHT98640.1 180 VRRALTQDISTLSAISQVDYDGIILKLNQLSNNVD 214
                    33334444444443333333333344444444444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.3
  Fzo_mitofusin  60 tnkakEralKrQfveyatekLrliv 84 
                    tn a  +a+  Q  e +++ +++  
     EHT98640.1 319 TNDASTKAFLAQLDELSQQDINMDL 343
                    6667777777777766666665544 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.9   0.00029      0.24     237     316 ..      71     174 ..      35     204 .. 0.67
   2 ?    0.5   2.6       0.2   1.7e+02     218     320 ..     264     369 ..     257     377 .] 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00029
        FUSC 237 slarllarlraeeaaavpelaallaelaal..eaaaaaealeaalaalrarlralrrale......................adadtaalllarlaell 311
                 sl ++la l+++ +   ++l++ l ++++   +a+a+++a e+al+alr++l++++ ++                       +d  taa+ll +++  l
  EHT98640.1  71 SLSEQLAKLQQQANSDKQQLSQQLSTTEKTleTAQAQQAASEKALQALREKLASISGNDVrswlvaqadylvklagrklwsdQDVTTAAALLKSADASL 169
                 445555555555555544444444444444554555666666666666666666666666566555555555555555555557778888888887777 PP

        FUSC 312 aelaq 316
                 a++ +
  EHT98640.1 170 ADMND 174
                 77765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.2
        FUSC 218 aralrrllsrmlallallsslarllarlraeeaaavpelaallaelaal.eaaaaaealeaalaalrarlralrrale....adadtaalllarlaell 311
                  + ++ ll+  ++++ + +   rll + +a ++++++  ++ l+++ ++ +  a+ ++ +a  +a+ a+l++l++++      d+  ++ ll++l ++ 
  EHT98640.1 264 DNTAQPLLAPNQDVYLRENIRSRLLIAAQAVPRHQEEIYKQSLETVSTWvR--AWYDTNDASTKAFLAQLDELSQQDInmdlPDSLESQPLLEQLMQTR 360
                 555555555555555555555667777777666664449999999999952..4677777777777777777777766666656666666666655544 PP

        FUSC 312 aelaqllas 320
                  + + ++ s
  EHT98640.1 361 VRNLMAQPS 369
                 444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3174  (0.177032); expected 358.6 (0.02)
Passed bias filter:                     1174  (0.0654805); expected 358.6 (0.02)
Passed Vit filter:                       207  (0.0115455); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 2813.29
//
Query:       EHT98641.1  [L=242]
Description: uroporphyrinogen III synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-37  127.4   0.0    6.1e-37  127.2   0.0    1.0  1  HEM4      Uroporphyrinogen-III synthase HemD
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.024   14.4   0.0    1.5  1  CUE       CUE domain


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   6.8e-41   6.1e-37       2     231 ..      14     238 ..      13     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 6.8e-41
                 HHHHHHHHTTEEEEE---EECCECCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHHHTT---HHHHHCSEEESSHHHHHHHHHT.T---SEE-. CS
        HEM4   2 elaealearGaeplelPlieiepaedraelraalddleagkydwliftSanavealfealkreeedvkalaslkvaavGpaTaraLeel.glrvdlvps 99 
                 el+ +l a+G +++ lPlie++p  d  +l a l  l   + d++++ S++ +++  +a+k      +++a+l ++a+G++Ta a++   gl+v+  p 
  EHT98641.1  14 ELVSRLHAQGKQAWSLPLIEFAPGADLPSLPASLTTLR--RGDMVFLLSQQVIHYTQHAVK------AWPADLDYYAIGRSTALAFHTVsGLQVT-WPH 103
                 78899*****************************9999..***************655555......*********************8577776.888 PP

                 .SSSHHHHGG..GS-.---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEEESSHHHHHHHHHH-S-HH..HH CS
        HEM4 100 eegtaegLae..elaeslagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavvftSpstvrnllellkdeg..de 194
                 +++t+e+L++  +l+ +++gkr l+lrg+++r+ l e+L +rga+v  +e+Y++   +++ +   ++++++ v+ +v+tS +++ +l++l+++    ++
  EHT98641.1 104 AQETSEALIKlaTLQ-QVSGKRALILRGNQGRELLSETLTARGAQVFYAECYQRCQKHYDGAIEGRRWRDRHVSTLVVTSGEMLHQLYSLFPEVDreEW 201
                 8*******7731555.88889*********************************9999999999****************************9989*** PP

                 HCTSEEEEESHHHHHHHHHTT---SEEETS--HHHHH CS
        HEM4 195 lkevkvaaiGptTaealkklglkvdvvaeeptaeglv 231
                 l ++++++++++ a  +++lg++ + vae +++++l+
  EHT98641.1 202 LLRCRLIVVSERLASVAANLGWQDIHVAEGADNDALL 238
                 **********************************997 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.7e-06     0.024       3      18 ..     184     199 ..     183     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHSTTS-HH CS
         CUE   3 qmletLkemFPdldee 18 
                 +ml++L+++FP++d+e
  EHT98641.1 184 EMLHQLYSLFPEVDRE 199
                 79************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1824.30
//
Query:       EHT98642.1  [L=313]
Description: hydroxymethylbilane synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-81  272.2   0.0    3.5e-81  271.6   0.0    1.3  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    4.9e-23   81.3   0.1    8.9e-23   80.5   0.1    1.5  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.6   0.0   3.9e-85   3.5e-81       2     201 ..       7     211 ..       6     214 .. 0.96

  Alignments for each domain:
  == domain 1  score: 271.6 bits;  conditional E-value: 3.9e-85
  Porphobil_deam   2 rigtRkSkLAlaqaelvaeaLke...eeeveivtiktkGDkildkpLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglelaavlkr 93 
                     ri+tR+S+LA++qa++v+++L++     +ve+v++ tkGD ild+pLak+ggkglF+kele+a+le+++dlaVhS+KD+p++ p+gl l+++++r
      EHT98642.1   7 RIATRQSPLAMWQAQYVQQRLMSahpGLQVELVPMVTKGDIILDTPLAKVGGKGLFVKELEQAMLENRADLAVHSMKDVPVAFPAGLGLVTICQR 101
                     9********************654445669***************************************************************** PP

  Porphobil_deam  94 edprDvlvvks..sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldegeydaiiLAaAGLkRlgleerisevlspeellpav 186
                     +dprD++v ++  s++elp+gav+gTsSlRR++q++++rpdl +++lRGnv tRl+kld+g+ydaiiLAaAGL+Rlgle ri+++l+ e +lpav
      EHT98642.1 102 DDPRDAFVSNHyaSIDELPHGAVIGTSSLRRQCQISARRPDLVIRSLRGNVGTRLSKLDAGDYDAIILAAAGLNRLGLEARIRQLLPAEISLPAV 196
                     ********744789********************************************************************999********** PP

  Porphobil_deam 187 gQGalavevrkedee 201
                     gQGa+++e+r +d++
      EHT98642.1 197 GQGAVGIECRLDDST 211
                     ***********9976 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.1     1e-26   8.9e-23       2      75 .]     226     296 ..     225     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 1e-26
                      HHHHHHHHHHHHTT--TTSSEEEEEEEETTE.EEEEEEEE-TTS..S-EEEEEEEE-GGGHHHHHHHHHHHHHH CS
  Porphobil_deamC   2 levlaERallkeLeGGCsvPiGvyaeveaneelkLkglvlsldglksaveeaeakgeleeaeelGkklaeella 75 
                       +v+aERa++++LeGGC+vPiG++a+++++e ++L+glv+++dg+   v   e++g+  +ae++G++laeell+
       EHT98642.1 226 VCVKAERAMNTRLEGGCQVPIGSFAVLNGDE-IWLRGLVGAPDGST--VVSGERRGPRSQAEQMGISLAEELLN 296
                      69*************************9988.************76..********99**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2129.92
//
Query:       EHT98643.1  [L=852]
Description: adenylate cyclase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-255  849.1   0.0   2.5e-255  848.8   0.0    1.1  1  Adenylate_cycl  Adenylate cyclase, class-I
    2.4e-79  265.9   0.0      7e-78  261.1   0.0    2.2  2  Adenyl_cycl_N   Adenylate cyclase NT domain
  ------ inclusion threshold ------
      0.074   13.5   0.1        1.8    9.0   0.1    2.6  2  FCD             FCD domain


Domain annotation for each model (and alignments):
>> Adenylate_cycl  Adenylate cyclase, class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  848.8   0.0  4.2e-259  2.5e-255       1     600 [.     228     827 ..     228     828 .. 0.99

  Alignments for each domain:
  == domain 1  score: 848.8 bits;  conditional E-value: 4.2e-259
  Adenylate_cycl   1 ewldlGglsklsaeEYfGaslWqLYKgidsPyKavlKilLlEaYaseYPntkllskelkqkllegekvsvrlDaYllllekvteYLekkndakRL 95 
                     ewldlGgls+lsaeEYfGaslWqLYK+idsPyKavlK+lLlEaY++eYP+tkll++++kq+l++ge v   lD Y+++le+vt+YL++++d+ RL
      EHT98643.1 228 EWLDLGGLSTLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPDTKLLAMDIKQRLHDGEIVCFGLDTYCMMLERVTHYLTSIDDQPRL 322
                     8********************************************************************************************** PP

  Adenylate_cycl  96 dlvrrcFYlKveeklseeekekakewrreklkeLvkqWewseelieeldnrekWkikqvkkaneellelLllsYrnLiqfarknkisesispedi 190
                     dlvrrcFYlKv+ekls+ ++++++ wrre+l++Lvk+W+w++e+++ ldnr++Wki++v++a++ell+++++sY+nLi+far+n++s s sp+di
      EHT98643.1 323 DLVRRCFYLKVCEKLSTDDHQQRSGWRREILSQLVKSWGWDDEKLAILDNRAEWKIERVREAHNELLDAMMQSYHNLIRFARRNNLSVSASPQDI 417
                     *********************************************************************************************** PP

  Adenylate_cycl 191 giLtRkLyaaFeelpgkvellnpqisedlsekdltfievkenravkkgwylynqapkskellgeraveyaksliklvaWayfNgllteetqlhlv 285
                     g+LtRkLyaaFe+lpgkv+l+npqis+dlse++ltfi+v+++ra+++gwylynqap+ +++++++++ey+++l+klvaWa fNgllt++t+lh+ 
      EHT98643.1 418 GVLTRKLYAAFEALPGKVTLVNPQISPDLSESNLTFIHVPAGRANRPGWYLYNQAPDMSSIISHQPLEYNRYLNKLVAWAWFNGLLTSKTRLHIK 512
                     **********************************************************************************************9 PP

  Adenylate_cycl 286 sesvkleskkLsqlvkdLrevfkvkapkvtkedlakpceirklvliiNlekdptkelseqevkvdiqnsdlfslgsekesLvgsvdliyrnsWnE 380
                     +++  ++ ++L++lv+d++++f+ + p++t ++l++pceir+l++i+Nle+dpt+ +++q v++d+++ d+fs+g+++++L+gs+dl+yrnsWnE
      EHT98643.1 513 GNE-LCDLARLQELVDDVSSHFPLRLPAPTPKALYSPCEIRHLAIIVNLEHDPTSAFRNQVVHFDFRKLDVFSFGQQQQCLIGSIDLLYRNSWNE 606
                     998.67778************************************************************************************** PP

  Adenylate_cycl 381 irtlhfegeealleaLkvilnkihrgsaepesvevfcyskrlrselrnaveqlvkecielqlk.tkeeseqvktlkvggkkyqlffeergvslqe 474
                     +rtlhf+ge+a++e Lk+il+k+h+++++p++vevfcys++lr  +r++v+qlv+eciel+l+ t++e  ++k+l+++g++++lffe+ gvs+q+
      EHT98643.1 607 VRTLHFSGEQAMIEGLKTILGKMHQDASPPDTVEVFCYSQHLRGLIRTRVQQLVSECIELRLSsTRQEPGRFKALRMAGQTWGLFFERMGVSVQK 701
                     **************************************************************96778889************************* PP

  Adenylate_cycl 475 Leeakelyksiskkklselpraeleeeeklkvpeiidefasegllqfffedne..egfnvYildekneleiykqcsgskeelvkeinrlyasees 567
                     Le+a+e+y +is++kl+ l+ +   e++++ +p +++ +aseg++qfffed++  +gfn+Yilde+n++e+y++c+gskeelv++++r+y+s+++
      EHT98643.1 702 LENAVEFYGAISNNKLHGLSIKV--ESNQTPLPPVVNGYASEGIIQFFFEDTTddRGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHD 794
                     *****************999877..6899**********************99889*************************************** PP

  Adenylate_cycl 568 kkekeskiinFnlPQFYqlvkeegelkivpfks 600
                     + +  s++inFnlPQFYq+v++ ++ +++pf++
      EHT98643.1 795 RFTYGSSFINFNLPQFYQIVNVGDRYQVIPFRN 827
                     *******************************86 PP

>> Adenyl_cycl_N  Adenylate cyclase NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.1   0.0   1.2e-81     7e-78       2     198 ..       5     200 ..       4     201 .. 0.99
   2 ?    2.4   0.0     0.021   1.2e+02      15      67 ..     700     752 ..     694     770 .. 0.88

  Alignments for each domain:
  == domain 1  score: 261.1 bits;  conditional E-value: 1.2e-81
  Adenyl_cycl_N   2 lktlkkrldelnqlrleralaalseeqqevlellplLlhvnhpelpgyveedtpagiaefelskkqkkllkelarsaeekekkekakeaaieglyl 97 
                    ++tlk+rld++nqlr++ralaa+ +++q+v++llp+Llh++hp +pgy+++++p+gi  f+++++q++ll+el+ ++e +   + + e +i+g+y+
     EHT98643.1   5 IETLKQRLDAINQLRVDRALAAMGPAFQRVYSLLPILLHYQHPLMPGYLKGNVPHGINVFTPDENQLQLLAELTGEQELTLVDAPKGELPITGIYS 100
                    799********************************************************************************************* PP

  Adenyl_cycl_N  98 mGStgsiaqsekSDlDiWvchrselsaeelelLekKleliekwaeelgvevnfFlideekfrkkeeksslteessGsaqhlLLldEFYRtairlAG 193
                    mGSt+s++q++ SDlDiWvch+s+l++ee+ +L++K++l++kw++++g+ev+fFlide++fr+ +e+ +l  e++Gs+qh+LLldEFYRta+r+AG
     EHT98643.1 101 MGSTSSVGQNSVSDLDIWVCHQSWLDNEERLNLQRKCALLQKWCASMGIEVSFFLIDENRFRH-NESGNLGGEDCGSTQHILLLDEFYRTAVRMAG 195
                    ***************************************************************.8******************************* PP

  Adenyl_cycl_N 194 krllW 198
                    kr+lW
     EHT98643.1 196 KRILW 200
                    ***** PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.021
  Adenyl_cycl_N  15 lrleralaalseeqqevlellplLlhvnhpelpgyveedtpagiaefelskkq 67 
                    ++le+a++   + +++ l+ l++ ++ n+  lp  v++ ++ gi++f  ++++
     EHT98643.1 700 QKLENAVEFYGAISNNKLHGLSIKVESNQTPLPPVVNGYASEGIIQFFFEDTT 752
                    788899999999999999999**************************988765 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.088   5.3e+02      53      72 ..     184     203 ..     175     226 .. 0.85
   2 ?    9.0   0.1   0.00029       1.8      61     108 ..     382     429 ..     353     432 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.088
         FCD  53 raFHralaeaagnpvlaell 72 
                  +F+r+ +++ag + l++++
  EHT98643.1 184 DEFYRTAVRMAGKRILWNMV 203
                 68***************997 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00029
         FCD  61 eaagnpvlaelleelrarlrrlrrlalssperleeslaeHraildAir 108
                 + a+n++l+++++++++ +r +rr +ls  +  +++    r++++A +
  EHT98643.1 382 REAHNELLDAMMQSYHNLIRFARRNNLSVSASPQDIGVLTRKLYAAFE 429
                 569********************9999955555555444555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.38
# Mc/sec: 6642.85
//
Query:       EHT98644.1  [L=69]
Description: hypothetical protein CKS_4437 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-09   35.7   6.7    7.9e-09   35.1   6.7    1.3  1  LPAM_2    Prokaryotic lipoprotein-attachment site
  ------ inclusion threshold ------
       0.15   11.0   0.0       0.15   11.0   0.0    1.0  1  PA26      PA26 p53-induced protein (sestrin)


Domain annotation for each model (and alignments):
>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   6.7   8.9e-13   7.9e-09       1      23 []       7      29 ..       7      29 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 8.9e-13
      LPAM_2  1 lllllallllLaGCGqKGPLYlP 23
                ll+++++l++LaGCG+KGPLY+P
  EHT98644.1  7 LLAMTLALTSLAGCGLKGPLYFP 29
                799*******************9 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.6e-05      0.15     155     207 ..       3      55 ..       1      69 [] 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.6e-05
        PA26 155 havvllahfhslasfvfgcglepeldlesskklksasasan.ekedsseeeeee 207
                 +a+ lla++ +l+s+  gcgl+  l   ++++ k+a ++++ ++++++e+++++
  EHT98644.1   3 KAISLLAMTLALTSL-AGCGLKGPLYFPQQETPKQAAPTSApTQKQKAEASKAD 55 
                 79************7.6*****99999999888887777433444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 499.74
//
Query:       EHT98645.1  [L=274]
Description: diaminopimelate epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-67  225.3   0.1    1.3e-34  118.9   0.0    2.0  2  DAP_epimerase  Diaminopimelate epimerase
    0.00043   19.8   0.0    0.00059   19.4   0.0    1.1  1  PhzC-PhzF      Phenazine biosynthesis-like protein
  ------ inclusion threshold ------
       0.03   13.4   0.1          3    6.8   0.1    2.2  2  Pro_racemase   Proline racemase


Domain annotation for each model (and alignments):
>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0   2.2e-38   1.3e-34       1     120 [.       3     123 ..       3     124 .. 0.98
   2 !  104.7   0.0   5.7e-34   3.4e-30       2     121 .]     152     267 ..     151     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 2.2e-38
                    EEEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEE..EEETTEEEEEEEETTTEEESTTHCCHHHHHHHHHCTTS-S-SEEEEE CS
  DAP_epimerase   1 fakshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvk..psgeediklryfnrdgseaemCGnGvrvfaaylreggletkkevtve 94 
                    f+k+hG++nd++vvd v +++++ +el+++l+dr+ g+g d++l+v+   +++ d+++r+fn+dgse  +CGnG+r+fa++++ +gl++k++++v+
     EHT98645.1   3 FSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLIVEppYDPDLDFHYRIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVS 98 
                    79*********************************************9888999****************************************** PP

                    ETTEEEEEEEECTTSSEEEEEE--EE CS
  DAP_epimerase  95 tlgGeleievkddgekvkvdmGkasl 120
                    t++G ++++v+ d+  v+v+mG++++
     EHT98645.1  99 TQAGRMVLSVTPDEL-VRVNMGEPNF 123
                    *************98.*******986 PP

  == domain 2  score: 104.7 bits;  conditional E-value: 5.7e-34
                    EEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEEEEETTEEEEEEEETTTEEESTTHCC.HHHHHHHHHCTTS-S-SEEEEEET CS
  DAP_epimerase   2 akshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvkpsgeediklryfnrdgseaemCGnG.vrvfaaylreggletkkevtvetl 96 
                    a+s+Gnp++v+ v++ ++++v+   l+++l+++e++p++++v f++  ++e+i+lr+++r+++e+++CG+G ++++a  +++g l   ++v+v+++
     EHT98645.1 152 AVSMGNPHCVIQVESTKTAQVEL--LGPILESHERFPERVNVGFMEIINPEHIRLRVYERGAGETQACGSGaCAAVACGIQQGILS--QKVRVDLP 243
                    799********************..*********************************************************9955..******** PP

                    TEEEEEEEECTTSSEEEEEE--EEE CS
  DAP_epimerase  97 gGeleievkddgekvkvdmGkaslv 121
                    gG+l i +k  g+   +++G+a++v
     EHT98645.1 244 GGTLHIAWKGAGQP-LFMTGPATHV 267
                    ************96.*******875 PP

>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.9e-08   0.00059      46     225 ..      51     223 ..      43     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.9e-08
                 -SSTTSSEEEEEE-S.SSEES--HHHHHHHHHHHHHHCT-S-SCEEEEEETTEEEEE.EEEEETCEECCEEEEE-SEEEEEE-HHHHHHHHHHCCTSGG CS
   PhzC-PhzF  46 psdekarfrlRyFTP.vaEvdlcGHatlasahalaekglvasaetveletkaGilpvkslkekddgeellielkfPvikteevssedlallakllklaa 143
                 p d + +f  R+F +  +Ev+ cG      a+++  kgl+ ++  + ++t+aG++ +    +   +e +++ +  P +++ +v   + ++ +  l   a
  EHT98645.1  51 PYDPDLDFHYRIFNAdGSEVAQCGNGARCFARFVQLKGLT-NKSDIRVSTQAGRMVL----SVTPDELVRVNMGEPNFEPHQVPFRANKAENLYLLRVA 144
                 45778899*****87469*******999888888888875.999**********998....467778899************99776665555555555 PP

                 -TTS-BEEEESSSEEEEEEBSTCC..HHHH----HHHHHHHCT-EEEEEEEETTTSSCCEEEEEEEEGGGTEEEESS-HHHHHH CS
   PhzC-PhzF 144 qkalpiavkstglekvivplssee..avaelspdlaeeikkcpkkgvivtaaaeagskkdfhsRmFaPklGivEDpvtGsAsga 225
                 +++++  + s g+ + +++++s +  +v+ l p l e  + +p+++ +   + e  + ++++ R +    G  E  ++Gs+++a
  EHT98645.1 145 EQTVMFGAVSMGNPHCVIQVESTKtaQVELLGPIL-ESHERFPERVNVG--FMEIINPEHIRLRVY--ERGAGETQACGSGACA 223
                 889999**************998622578899999.9999999998854..455566677667777..5778899999999998 PP

>> Pro_racemase  Proline racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0023        14      58     121 ..      47     117 ..      30     164 .. 0.76
   2 ?    6.8   0.1   0.00051         3      78     123 ..     212     252 ..     206     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0023
                   EEE--SSTTSSEEEEEEESSSB.-SSTHHHHHHHHHHHHHTTSS-SE.....EEECEEEEE.ETTEEEEEE CS
  Pro_racemase  58 llvppkepdadlgvifletsgy.lpmcGsntigvvtvlletGlvevq.....epetklsle.tpaGlvevt 121
                   ++ pp++pd d+   +++++g   + cG+++ + ++++  +Gl +       +++ +++l  tp  lv+v+
    EHT98645.1  47 IVEPPYDPDLDFHYRIFNADGSeVAQCGNGARCFARFVQLKGLTNKSdirvsTQAGRMVLSvTPDELVRVN 117
                   5679**********999999872589**********99988985443222224555555542455555555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00051
                   SB-SSTHHHHHHHHHHHHHTTSS-SEEEECEEEEEETTEEEEEEEE CS
  Pro_racemase  78 gylpmcGsntigvvtvlletGlvevqepetklsletpaGlvevtae 123
                   g ++ cGs++ ++v++ +++G+++ + +     ++ p+G+++++ +
    EHT98645.1 212 GETQACGSGACAAVACGIQQGILSQKVR-----VDLPGGTLHIAWK 252
                   56789*****************987655.....5999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2322.09
//
Query:       EHT98646.1  [L=234]
Description: uncharacterized DUF484 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-79  265.3   2.7    5.2e-79  265.1   2.7    1.0  1  DUF484    Protein of unknown function, DUF484


Domain annotation for each model (and alignments):
>> DUF484  Protein of unknown function, DUF484
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.1   2.7   2.9e-83   5.2e-79       5     224 ..      13     231 ..       9     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 265.1 bits;  conditional E-value: 2.9e-83
      DUF484   5 aldaedVadyLrqhpeFfkqhpelveeLrlphqaantvsLvevqlararerireleeelaalmelAraNerlfarllalqldlldarsledvlrrleas 103
                  ld+e+V dyLrqhp+Ff ++++ ve++++ph++++ vsLve+++ar+r++i++leee++ lme+A aN++lfarllalq  l +a+sl+d+l+rl+++
  EHT98646.1  13 LLDDEAVSDYLRQHPDFFMRNARQVEQMAVPHPVRGSVSLVEWHMARQRNHIQRLEEEITLLMEQATANQQLFARLLALQSHLAAASSLQDMLNRLHRW 111
                 69************************************************************************************************* PP

      DUF484 104 arelflaaavrlllfhdskvk.gesatdevilsskaleelrvdrlggekpilgrlrqaekllLfgdeaeeigSvavvlLssqaplgllafgSrDpehfq 201
                 arel+la+ ++++lf+d+++  ++s   ++ l+++a+e+lr++r+g+e+++lg ++ +e+llL++ +a++igSva++l+++q++lg+++f+SrD  h+q
  EHT98646.1 112 ARELGLAG-ANIRLFNDKWRLgAPSDFVQLGLARQAFEPLRIQRFGNEQHYLGSINGPELLLLLP-QAKAIGSVAMSLMGEQGELGIIMFSSRDSLHYQ 208
                 ********.************99*************************************99999.********************************* PP

      DUF484 202 pgmgTlfLrhlaevlarllerws 224
                 +gmgTl+L+hl +++++llerw+
  EHT98646.1 209 SGMGTLLLQHLSQMMPELLERWV 231
                 **********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1821.52
//
Query:       EHT98647.1  [L=301]
Description: site-specific tyrosine recombinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-54  182.5   0.0    9.3e-54  181.8   0.0    1.3  1  Phage_integrase  Phage integrase family
      1e-22   80.2   1.4      2e-22   79.3   0.4    1.9  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.012   16.0   0.0          1    9.7   0.0    2.4  2  Phage_int_SAM_5  Phage integrase SAM-like domain
       0.02   13.9   0.1      0.034   13.1   0.1    1.3  1  DUF3435          Protein of unknown function (DUF3435)
      0.033   14.7   0.0       0.23   12.0   0.0    2.2  1  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.0   2.6e-57   9.3e-54       2     171 ..     114     281 ..     113     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.8 bits;  conditional E-value: 2.6e-57
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeks 94 
                      +++ dev++ll++  + +l+ird+++le++y+ GlR sEl++++  ++dle g+++v    gKg+ker vp++++a++++k++l ++l  + ++
       EHT98647.1 114 NIDVDEVNQLLEIDLNdPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWV---SGKGNKERRVPIGRTAVNWIKQWLPHRLAFNADD 204
                      6789*********9888****************************************...********************************** PP

                      SBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase  95 ellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                      ++lf+s rgk++s+++v+k+f +++ ++g++++++pH+lRhsfat+Lle+  dlr+vq+llGH+++sttqiYth+++
       EHT98647.1 205 DALFLSSRGKRISARNVQKRFAEWGIKQGVNSHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDF 281
                      **************************************************************************986 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.4   5.6e-26     2e-22       1      83 [.       9      91 ..       9      92 .. 0.98
   2 ?   -1.7   0.0         1   3.6e+03      25      45 ..     257     277 ..     255     292 .. 0.62

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 5.6e-26
                     HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHT CS
  Phage_int_SAM_1  1 leqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvre 83
                     +++fl+yL++er+lsp Tl++Y r+L++++  ++e +  ++ ql++++vr++ a+++++gl+a+sla+rlsalrsF+++ v++
       EHT98647.1  9 VDGFLRYLKVERQLSPLTLSSYARQLEALVSIADEMKVGAWSQLDPAMVRSMAARSRRAGLAASSLALRLSALRSFLDWQVSQ 91
                     589****************************************************************************9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                      HHHHHHHHHHH.TS--TTT-- CS
  Phage_int_SAM_1  25 dLrrflkflaergkesleqlt 45 
                      dLr++++ l +++ ++ +  t
       EHT98647.1 257 DLRAVQELLGHANLSTTQIYT 277
                      788888888883333333333 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00029         1      49      84 ..       7      42 ..       1      51 [. 0.88
   2 ?    3.8   0.0      0.02        72      60      97 ..      65     100 ..      48     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00029
                     HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHH CS
  Phage_int_SAM_5 49 efleeFedYLkkkkglsentiskyfkklkavlnkAi 84
                     e + +F  YLk +++ls+ t s+y ++l a+++ A 
       EHT98647.1  7 EAVDGFLRYLKVERQLSPLTLSSYARQLEALVSIAD 42
                     67889*****99*******************99885 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
                      HTS---HHHHHHHHHHHHHHHHHHHHTTS--S-HHHHH CS
  Phage_int_SAM_5  60 kkkglsentiskyfkklkavlnkAikegilkknpypkk 97 
                      ++ gl+ ++ +  ++ l+ +l   +++++l  np  +k
       EHT98647.1  65 RRAGLAASSLALRLSALRSFLDWQVSQDMLPANP--AK 100
                      67799999**************************..55 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.5e-06     0.034     169     235 ..     212     276 ..     201     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.5e-06
     DUF3435 169 kdealtastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHassrtFlkhY 235
                 + ++++a+ +++r  + g  +g +  i+p+klR   a +l eS+    a ++ +l+Ha+ +t  + Y
  EHT98647.1 212 RGKRISARNVQKRFAEWGIKQGVNSHIHPHKLRHSFATHLLESSGDLRAVQE-LLGHANLSTT-QIY 276
                 67899******************************99998876555555554.6899998886.444 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-05      0.23       4      83 ..      11      93 ..       9      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-05
  Phage_int_SAM_4  4 rfrealrl.aglserTiksYlsaikrflrflkkk...apeeltkedieaYlnyLanerklsastqknalnalsffykkvlerel 83
                      f+++l++ ++ls+ T  sY ++++ ++   ++    a ++l+++ +++  +  + +  l+as+    l+al++f  + + +++
       EHT98647.1 11 GFLRYLKVeRQLSPLTLSSYARQLEALVSIADEMkvgAWSQLDPAMVRSMAARSR-RAGLAASSLALRLSALRSFLDWQVSQDM 93
                     58899999999***************99999855566889999999999777766.888****************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2348.38
//
Query:       EHT98648.1  [L=238]
Description: FMN phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-13   51.0   0.0    5.5e-13   49.4   0.0    1.7  1  HAD_2            Haloacid dehalogenase-like hydrolase
    4.8e-13   49.9   0.1    7.1e-13   49.3   0.1    1.3  1  Hydrolase        haloacid dehalogenase-like hydrolase
    6.9e-10   38.9   0.0    3.2e-09   36.7   0.0    2.0  2  Hydrolase_like   HAD-hyrolase-like
  ------ inclusion threshold ------
      0.026   15.5   0.6       0.52   11.4   0.2    2.2  2  Methyltransf_24  Methyltransferase domain
      0.027   14.1   0.3        2.7    7.6   0.0    2.9  3  PGP_phosphatase  Mitochondrial PGP phosphatase
      0.071   12.3   0.1      0.097   11.8   0.1    1.2  1  DUF1338          Domain of unknown function (DUF1338)


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   1.9e-16   5.5e-13       1     178 []      13     207 ..      13     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.9e-16
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey........glselseeelrklig...lslrellrklgeseeeee..............kieellrkyneekk 74 
                 i FDlD+Tl+d  ++i ++++   +          +   ++++++++l +   l   +++  ++e  +                 + +    +++e  +
  EHT98648.1  13 ITFDLDDTLYDNYPVIRKTTEASHAALqafhpavrD---VTPDDVATLRNqlrLREPDIYHDVTEWRR--RtiellmtdagltaaDATAGAAQIMEVFH 106
                 56**************98887655444445664441...55555555444111333333333333222..24567777777777744444455555555 PP

       HAD_2  75 k..kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakk 170
                 +   +v +  + +++L+ L ++++ l  +T+++++      e+lg+  yF++ + +   ++ KP +++++ a ++l++ + +++ vGD   tD+ +a +
  EHT98648.1 107 HwrSQVAMPAETHDTLKAL-AKKVPLVAITNGNAQ-----PEKLGLSAYFQFSLRAGPDGRAKPWQDMYHLAAQRLNIAPGSILHVGDDLtTDVAGALR 199
                 5566788899*********.99**********987.....5899*********************************************99******** PP

       HAD_2 171 agikviav 178
                  g++++++
  EHT98648.1 200 YGMQACWI 207
                 *****996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   2.4e-16   7.1e-13       1     206 [.      10     197 ..      10     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.4e-16
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHHHHHHHETTTE.....HHHHTHHHHHHHHHCHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.sgaltgfatfigrg.....ayaigkpewltaldippdlgaaigsa 93 
                 ik++ fD+d TL++  p+++++++               h   +a+  a  ++ +   +++at+  +       +     ew ++     +l +++  +
  EHT98648.1  10 IKAITFDLDDTLYDNYPVIRKTTEAS-------------HAALQAFHPAVRDVtP---DDVATLRNQLrlrepDIYHDVTEWRRRT---IELLMTDAGL 89 
                 89************************.............4444444333333333...4444433333555566677777777777...3333333333 PP

                 HHHCHHHHHHTTHHHHHHHHHHTHHBHT.THHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  94 qsqgrtvallqaralavftiadplkvkp.eaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkp 190
                  +++ t+    a++ +vf    +   +p e+ +++++L  +++++v +t++n ++ +     lG   yf++++ +  ++ akp +++++ a+++L++ p
  EHT98648.1  90 TAADATAG--AAQIMEVFHHWRSQVAMPaETHDTLKALA-KKVPLVAITNGNAQPEK-----LGlSAYFQFSLRAGPDGRAKPWQDMYHLAAQRLNIAP 180
                 33333333..33777777776554444425558888877.5699********99998.....8888899****************************** PP

                 GGEEEEESSHH.HHHHH CS
                 xxxxxxxxxxx.xxxxx RF
   Hydrolase 191 eevamVGDgvn.Daaal 206
                   +++VGD ++ D+a++
  EHT98648.1 181 GSILHVGDDLTtDVAGA 197
                 ***********999987 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.8   2.4e+03      33      59 ..     119     145 ..      99     151 .. 0.76
   2 !   36.7   0.0   1.1e-12   3.2e-09       3      48 ..     162     207 ..     161     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.8
                     THHHHHHHCT-EEEEESSSSS-TTTHH CS
  Hydrolase_like  33 tDiagAnnaGwksvLVltGvtrpedle 59 
                     +D + A + ++  v+++ G+ +pe+l 
      EHT98648.1 119 HDTLKALAKKVPLVAITNGNAQPEKLG 145
                     577777777888889999999988775 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.1e-12
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                      KP + my  a+++l+++p+ +l +GD+l tD+agA ++G++ + +
      EHT98648.1 162 AKPWQDMYHLAAQRLNIAPGSILHVGDDLTTDVAGALRYGMQACWI 207
                     59****************************************9865 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00017      0.52      44      87 ..      45      97 ..       9     116 .. 0.70
   2 ?    2.7   0.0     0.086   2.6e+02      45     105 ..     156     219 ..     107     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
  Methyltransf_24 44 e.........aglddrvrlikadseealaslaagsiDllfiDgghaaeavled 87
                               a l++++rl++ d  + ++++++++i ll+ D+g +a+++ + 
       EHT98648.1 45 AvrdvtpddvATLRNQLRLREPDIYHDVTEWRRRTIELLMTDAGLTAADATAG 97
                     0333445578999********************************99655443 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.086
  Methyltransf_24  45 aglddrvrlikadseealaslaagsiDllfi..Dgghaaeavled.leallprlapggvvlfdD 105
                      ag d r++ +++  + a+++l+  +  +l++  D   + + +l++ ++a++  l++g ++++dD
       EHT98648.1 156 AGPDGRAKPWQDMYHLAAQRLNIAPGSILHVgdDLTTDVAGALRYgMQACWINLREGNLMHIDD 219
                      6777777777777788888888444455555215555545555554799999999999999999 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.025        76      40      75 ..       9      43 ..       5      60 .. 0.68
   2 ?    7.6   0.0   0.00092       2.7     133     163 ..     177     207 ..     166     212 .. 0.83
   3 ?   -1.6   0.0      0.58   1.7e+03      15      29 ..     220     234 ..     215     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.025
  PGP_phosphatase 40 tikavvlDKDnclaapkedkvaeeikekleelrevy 75
                      ika+ +D D++l  ++   + ++ +++  +l++ +
       EHT98648.1  9 AIKAITFDLDDTLYDNY-PVIRKTTEASHAALQAFH 43
                     79**********96543.344444444444444444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00092
  PGP_phosphatase 133 veeadeiavvgDRllTdvllanmmGslgvwl 163
                         +  i+ vgD l+Tdv  a ++G  + w+
       EHT98648.1 177 NIAPGSILHVGDDLTTDVAGALRYGMQACWI 207
                      45688999*****************999997 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.58
  PGP_phosphatase  15 slvlPhltvptfrql 29 
                       ++lPh++++++ +l
       EHT98648.1 220 ARLLPHVEISQLASL 234
                      5789*****999877 PP

>> DUF1338  Domain of unknown function (DUF1338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.3e-05     0.097     122     198 ..      48     129 ..      40     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
     DUF1338 122 dlsdaaqraieayvlaareiftkrllellekle....edggltagdaeafvaealetf.rwqkeapvakadyelLaaeseya 198
                 d ++++ +++++++  +++++ ++++e+ ++++    +d glta+da+a+ a+++e+f  w+++ ++  ++ ++L+a  + +
  EHT98648.1  48 DVTPDDVATLRNQLRLREPDIYHDVTEWRRRTIellmTDAGLTAADATAGAAQIMEVFhHWRSQVAMPAETHDTLKALAKKV 129
                 5566666777777777777766666665555443333899******************99**99998899998888765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1760.38
//
Query:       EHT98649.1  [L=720]
Description: DNA-dependent ATPase I and helicase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-76  255.3   0.0    2.4e-75  254.0   0.0    1.6  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    7.6e-75  252.5   0.0    4.2e-74  250.0   0.0    1.9  1  UvrD_C           UvrD-like helicase C-terminal domain
    1.1e-32  113.4   0.0    3.2e-32  111.9   0.0    1.8  1  AAA_19           AAA domain
    3.9e-10   39.8   0.2     0.0012   18.6   0.0    2.9  3  AAA_30           AAA domain
    2.3e-09   36.9   0.0      5e-09   35.9   0.0    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0023   17.7   0.0        3.8    7.2   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0024   17.4   0.0      0.024   14.1   0.0    2.2  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.014   15.2   0.0       0.56    9.9   0.0    2.4  2  AAA_11           AAA domain
      0.026   12.8   1.9      0.024   12.9   0.6    1.5  2  Exonuc_V_gamma   Exodeoxyribonuclease V, gamma subunit


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0   0.0   1.2e-78   2.4e-75       1     314 [.      10     271 ..      10     272 .. 0.97

  Alignments for each domain:
  == domain 1  score: 254.0 bits;  conditional E-value: 1.2e-78
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln++qr+aia +++++lv+A+AGsGKT+vl++ri+ l+  e+++p +i++vTFTnkAa+E+++Rie++++ ++                  ++i+T
     EHT98649.1  10 LNDKQRAAIAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQ----------------GGMWIGT 89 
                    799*******************************************************************985................89***** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +H++++++l++++ ++gl ++f+ild+ed     q++llk+l++      +nld+k++ ++                       +   +++  k++
     EHT98649.1  90 FHGLAHRLLRAHHLDAGLPQDFQILDSED-----QLRLLKRLIK-----AMNLDEKQWPAR-----------------------QGMWYINGKKDE 152
                    *****************************.....9********7.....69********77.......................7899******** PP

                    TCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEE CS
  UvrD-helicase 193 qlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfm 288
                     l+pk+ ++     ++ ++ +  +++ yqe +++  ++Df++ll+++ el+ +++ +++++rer+  il+DE+QDTn+iQy+++++la + +++++
     EHT98649.1 153 GLRPKHIES---YGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPPILNHYRERFSNILVDEFQDTNNIQYAWIRMLAGDSSKVII 245
                    ********9...67********************************************************************************** PP

                    EE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 289 vGDpkQsIYgFRgAdielflkkkkdf 314
                    vGD++QsIYg+RgA++e+++++  df
     EHT98649.1 246 VGDDDQSIYGWRGAQVENIQRFLTDF 271
                    ********************998877 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   0.0   2.1e-77   4.2e-74       1     348 [.     277     616 ..     277     617 .. 0.87

  Alignments for each domain:
  == domain 1  score: 250.0 bits;  conditional E-value: 2.1e-77
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrrale.kek.ktvekgekivvleaeteeeEaekiaatikallekneklediavLvRsnkdadkiskaLkkegi 97 
                 i+Le+NyRSt+++lkaan++++n+ +r   + ke  ++ ++ge++ v+ a +e +E++++++ ika++e+ ++l+d+a+L+Rsn++++ +++aL +  +
  EHT98649.1 277 IRLEQNYRSTNTILKAANALIANNNGR---LgKELwTDGSDGEPVSVYCAFNELDESRFVVNRIKAWMENGNALADCAILYRSNAQSRVLEEALLQASM 372
                 79*******************999999...32333799************************************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  98 pfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsltDfikedtleygeeFieliraleeknlelllkki 196
                 p++++++++fF+r+eikd+layl+l+an++d++a++r+++++++g+g++t++ + +  ++                    i l +a  e  ++      
  EHT98649.1 373 PYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGVGDRTLDVVRQTAREQQ------------------ITLWQATRELLQS------ 447
                 ******************************************************33333333..................3333333333333...... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 197 ektaeerqalvskyadlfkelaeklaelkekseskr................kkee...klenlreLysllkelekkeeeeeveeklneileiatLses 276
                 +  a ++ + ++++ +l   la++ ae+  + +++r                +  +   ++enl+eL++++++++ ++e+e+ +  l+ +l++a+L+++
  EHT98649.1 448 RALAGRAASALQRFCELVDSLASETAEMPLHVQTDRvikdsglwlmyeqekgE--KgqaRIENLEELVTATRQFSYQDEDEDLMP-LQAFLSHAALEAG 543
                 33355556677777788888888888888888888788888888888776541..2456*****************999999876.************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 277 eleeskkkekipiiTiHqAKGlEFdvVflagleegtfPsyrskk.ekrleEEkRlfYVaiTRAkkrLfisysk 348
                 e ++ k ++ ++++T+H+AKGlEF  Vf++g+eeg fPs+++ +  +rleEE+Rl YV++TRA  +L+++y++
  EHT98649.1 544 EGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFPSQMALDeGGRLEEERRLAYVGVTRAMMKLTLTYAE 616
                 **999999**********************************996689***********************87 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   1.6e-35   3.2e-32       1     144 [.      14     255 ..      14     257 .. 0.93

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 1.6e-35
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal................ 77 
                 qr+a+ a+++++llv+aG+G+GKTrvl+h++a+l+++++ +p +i++v+ft++Aa e+r r++ l +       + T+H+la                 
  EHT98649.1  14 QRAAI-AAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTsqggmwIGTFHGLAHrllrahhldaglpqdf 111
                 78899.********************************************************99988899***********99**************** PP

      AAA_19  78 ...........................................................................ldfddlltealel.leeaeeekkl 100
                                                                                            +df +ll  a el l++    ++ 
  EHT98649.1 112 qildsedqlrllkrlikamnldekqwparqgmwyingkkdeglrpkhiesygnpveqtwlriyqayqeacdraglVDFAELLLRAHELwLNKPPILNHY 210
                 *********************************************************************999999777777766555423444455566 PP

      AAA_19 101 qeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                 +e++  ++vDEfqd++  qy+ ++ l+g++ k+++vGD+dQ+iy 
  EHT98649.1 211 RERFsNILVDEFQDTNNIQYAWIRMLAGDSSKVIIVGDDDQSIYG 255
                 778889************************99***********96 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.2e-07    0.0012       2      67 ..      10      75 ..       9     127 .. 0.76
   2 !   17.8   0.0     1e-06    0.0021      88     174 ..     212     302 ..     188     311 .. 0.82
   3 ?   -1.5   0.2       0.9   1.8e+03      41      81 ..     437     481 ..     424     518 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.2e-07
      AAA_30  2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeelg 67
                ln++Q+aa++a   s     ++ ++AG+GKt +l +  + ++  ++   +++++++ t+kaA+++++ ++
  EHT98649.1 10 LNDKQRAAIAAP-RS---NLLVLAGAGSGKTRVLVHRiAWLLSVENcspYSIMAVTFTNKAAAEMRHRIE 75
                899999999533.33...3688999*******99776244444444788*****************8665 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1e-06
      AAA_30  88 pg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRqkeseeraaalalregda 174
                 ++ + ++vDE   +++ q a +   a + + kvi+vGD++Q     +G++++ +++      g++t++L++++R +++  +aa   +++++ 
  EHT98649.1 212 ERfSNILVDEFQDTNNIQYAWIRMLAGD-SSKVIIVGDDDQSIYGWRGAQVENIQRFltdfPGADTIRLEQNYRSTNTILKAANALIANNNG 302
                 4447799*****9999999999999988.************99999999999996547766899***********99888888888777654 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.9
      AAA_30  41 aweaaggrviglAptgkaAkvLaeelgi....eastiakllkrlk 81 
                 +w+a  + +   A  g+aA +L++ +++    +++t +  l+ ++
  EHT98649.1 437 LWQATRELLQSRALAGRAASALQRFCELvdslASETAEMPLHVQT 481
                 555555566677888888988887666434446666666666555 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   2.5e-12     5e-09       4      51 ..     556     612 ..     553     613 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.5e-12
    UvrD_C_2   4 altihkaQGsefpaVivfdpd.laaarmgel........rrrlLYtavTRAreklil 51 
                  +t h a+G+ef  V+++ ++  + + +++l         rrl+Y++vTRA +kl+l
  EHT98649.1 556 LMTLHSAKGLEFSQVFIVGMEeGMFPSQMALdeggrleeERRLAYVGVTRAMMKLTL 612
                 69******************987777777779***********************98 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        33       2      20 ..      26      44 ..      25      78 .. 0.78
   2 ?    2.3   0.0     0.058   1.1e+02      63     112 ..     214     264 ..     205     330 .. 0.73
   3 !    7.2   0.0    0.0019       3.8     174     230 ..     546     610 ..     505     613 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
  Viral_helicase1  2 vvhGvpGcGKStlirkllr 20
                     +v + +G+GK++++++ + 
       EHT98649.1 26 LVLAGAGSGKTRVLVHRIA 44
                     78899********999875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.058
  Viral_helicase1  63 gkililDEylllh...aGyilllaalskaklvilfGDplQipfhsrnasflla 112
                      +  +++DE++  +   ++ i +la +s+   vi++GD  Q+ +  r a++++ 
       EHT98649.1 214 FSNILVDEFQDTNniqYAWIRMLAGDSS--KVIIVGDDDQSIYGWRGAQVENI 264
                      5667888888654111556666666666..5*********9888776655554 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0019
  Viral_helicase1 174 qalkealgvrevttvhevqGltfdkVtlvllketdlelis...........esrenllvAlTRhrksl 230
                      qa+k +  v+  +t h++ Gl+f+ V +v  +e      s           e+r   +v+ TR+  +l
       EHT98649.1 546 QADKWQDAVQ-LMTLHSAKGLEFSQVFIVGMEEGM--FPSqmaldeggrleEERRLAYVGVTRAMMKL 610
                      6777777888.******************886643..2224566678888877888888888887766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.2     4e+02       6      37 ..      11      40 ..       7      54 .. 0.69
   2 !   14.1   0.0   1.2e-05     0.024     122     186 ..     216     279 ..     213     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
                SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHH CS
        PhoH  6 tkeQkeylealkkndivfaiGpaGtGKtylav 37
                + +Q++++ a ++n +v  ++ aG+GKt + v
  EHT98649.1 11 NDKQRAAIAAPRSNLLV--LAGAGSGKTRVLV 40
                56677776666655444..4569*****7655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.2e-05
                 EEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------.------THHHHHHTTT-TTEEEEE- CS
        PhoH 122 fvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp.kgkksGlaealevlknvegieivel 186
                  +++DE Q+t++ q   + +  G +skv+++Gd  q     +     ++++++ l++  g+++++l
  EHT98649.1 216 NILVDEFQDTNNIQYAWIRMLAGDSSKVIIVGDDDQSIYGwR--GAQVENIQRFLTDFPGADTIRL 279
                 599******************************998755423..3556666666666666666666 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00028      0.56       2      75 ..      10      75 ..       9      85 .. 0.82
   2 ?    2.6   0.0      0.05     1e+02     211     253 ..     207     251 ..     203     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
      AAA_11  2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerll 75
                lnd+qr ai+ + s+    ++ G  G+gKT+++v+ ++ ll     + e++ +  i + + +N+A  e+  r+ 
  EHT98649.1 10 LNDKQRAAIAAPRSNL--LVLAGA-GSGKTRVLVHRIAWLL-----SVENCSPYSIMAVTFTNKAAAEMRHRIE 75
                89*******8776655..577777.***************4.....4578999999999999999999888874 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.05
      AAA_11 211 leklakkfdvviIDEAaqavEps.tliPlrlga.kkvvLvGDpkQ 253
                 l++++++f  +++DE      ++ ++i ++ g  +kv++vGD  Q
  EHT98649.1 207 LNHYRERFSNILVDEFQDTNNIQyAWIRMLAGDsSKVIIVGDDDQ 251
                 67777889999999998888876468988776559*******988 PP

>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.1   2.1e+03     533     575 ..     186     229 ..     179     235 .. 0.76
   2 ?   12.9   0.6   1.2e-05     0.024     519     660 ..     447     586 ..     427     599 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
                     HHHHHHHHHH.HHHHSSS-B-HHHHTTHHHHHHHHH----SHHH CS
  Exonuc_V_gamma 533 laellerLek.wrqrlskprtleeWlerlselledffaedeeee 575
                     l+++ e L + +  +l+kp  l++++er+s++l d f+++++ +
      EHT98649.1 186 LVDFAELLLRaHELWLNKPPILNHYRERFSNILVDEFQDTNNIQ 229
                     56666665540455779999***********9999998777655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.2e-05
                     -TTS-SCTHHHHHHHHHHHHHHHHHHHHSSS-B-HHHHTTHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTT--S-.B-HHHHHHHHH. CS
  Exonuc_V_gamma 519 ydevegseaellgklaellerLekwrqrlskprtleeWlerlselledffaedeeeeeelqelrealaelaeeaaaakfeqe.lslevvrelle. 611
                        + g  a +l++++el+++L+  ++++    +l+   +r+ +     +  ++e+ e+ q+  e+l+el ++++++++++e  +l  +++ l+ 
      EHT98649.1 447 SRALAGRAASALQRFCELVDSLASETAEM----PLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSYQDEdEDLMPLQAFLSh 537
                     33334444444444444444444433333....22222222222222222334444444455555555555555555555544455555555541 PP

                     HHHHH-EE-TTTTSSSEEEEE--TT----EEEEEEE--BTTTSS----- CS
  Exonuc_V_gamma 612 erlsqesasqrfltGkvtfctllpmrsiPfrvvclLGlndgdfPrqdep 660
                     ++l++ + ++     +v++ tl + + + f  v ++G+++g fP q + 
      EHT98649.1 538 AALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFPSQMAL 586
                     5688888888999*******************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 4427.51
//
Query:       EHT98650.1  [L=317]
Description: magnesium/nickel/cobalt transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-55  188.9   0.2    1.4e-55  188.7   0.2    1.0  1  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.07   13.2   0.6         10    6.2   0.1    2.5  3  PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.2   1.6e-59   1.4e-55       4     292 .]      27     313 ..      24     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 1.6e-59
        CorA   4 fvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkdeg 102
                  vW+dl  p+e e+++++ elg    +  +l+d e ++r+ +++d+l ++  +++ d +++++  + +++ +++ +l+t+r+++l+a++  + r++++ 
  EHT98650.1  27 SVWVDLVEPEEGERDRVQSELGQSLATRPELEDIEASARFFEDEDGLHIHSFFFFEDAEDHAGNST-VAFTIREGRLYTLRERELPAFRLYRMRARNQT 124
                 69*******************999888888***********999*******999999999997666.*****************************999 PP

        CorA 103 gkpkspgellyrlldeivdrlfellekleeeldeledel....edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdl 197
                   + +++ell+ l+++ +++l++++e++ + l++l++ +    + ++ ++ l++la+l+    k+r +l +++++l+ l++   + +l+  + e+ r++
  EHT98650.1 125 LIDGNAYELLLDLFETKIEQLADEIENIYSALEKLSRVImegqQGEEYDQALSRLAELEDIGWKVRLCLMDTQRALNFLVR---KARLPGNQLEQAREI 220
                 ***************************************999888899999*************************66666...77777777777**** PP

        CorA 198 ldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfkr 292
                 l ++e+ll + e+l ++++ l+++ +  ++ ++Nr++k+++v++++flP+Tl+++ yGmNf+++Pel+ws+gyp +  ++lm+l+ ++++++fkr
  EHT98650.1 221 LRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGA--ICLMMLAGLAPYLYFKR 313
                 ****************************************************************************..****************8 PP

>> PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.5   1.4e+04     103     121 ..      50      68 ..      44      71 .. 0.62
   2 ?    6.2   0.1    0.0011        10      24      73 ..     130     178 ..     120     187 .. 0.75
   3 ?    4.8   0.0    0.0031        28      38      64 ..     208     234 ..     206     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.5
    PARP_reg 103 klellesLsdievaskllk 121
                  l+   +L+die++ ++ +
  EHT98650.1  50 SLATRPELEDIEASARFFE 68 
                 5555556888887776665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0011
    PARP_reg  24 mkeleiDlkkmPLGkLskeqikkgyevLkelselikkkekaeklkeklld 73 
                   el +Dl ++ + +L  ++i++ y++L++ls +i ++++ e+++++l++
  EHT98650.1 130 AYELLLDLFETKIEQLA-DEIENIYSALEKLSRVIMEGQQGEEYDQALSR 178
                 55666777777777775.67****************99997755555544 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0031
    PARP_reg  38 kLskeqikkgyevLkelselikkkeka 64 
                 +L  +q++++ e+L+++++l+ ++e+ 
  EHT98650.1 208 RLPGNQLEQAREILRDIESLLPHNESL 234
                 57789***************9888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2289.96
//
Query:       EHT98651.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-44  151.2   0.0    3.1e-44  149.9   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   3.4e-48   3.1e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.4e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHT98651.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHT98651.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHT98651.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHT98651.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHT98651.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHT98651.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2166.62
//
Query:       EHT98652.1  [L=125]
Description: MarR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-26   92.1   0.1    1.9e-26   91.7   0.1    1.1  1  HxlR          HxlR-like helix-turn-helix
    0.00097   19.1   0.1     0.0014   18.5   0.1    1.4  1  PadR          Transcriptional regulator PadR-like family
     0.0053   16.6   0.1     0.0098   15.8   0.1    1.4  1  MarR_2        MarR family
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.014   15.6   0.0    1.2  1  HTH_34        Winged helix DNA-binding domain
      0.015   15.4   0.2      0.017   15.2   0.2    1.1  1  Replic_Relax  Replication-relaxation
      0.056   13.3   0.0       0.08   12.8   0.0    1.3  1  DUF3116       Protein of unknown function (DUF3116)
      0.071   13.2   0.8       0.12   12.4   0.7    1.5  1  HTH_20        Helix-turn-helix domain
      0.092   12.7   0.0       0.14   12.1   0.0    1.4  1  MarR          MarR family


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.1   8.5e-30   1.9e-26       2      88 ..      24     110 ..      23     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 8.5e-30
                 HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 ig+kW+llil +l + + Rf+el+r+++++++++L+++L++Le dg i r+ ypevPp+veYslte Grs  + +q+l +w++++ +
  EHT98652.1  24 IGDKWSLLILEALAERTLRFNELHRHIGDVARQVLSRTLKRLEVDGYILRTLYPEVPPRVEYSLTELGRSFLKPMQQLIAWADDNHQ 110
                 89********************************************************************************99865 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   6.3e-07    0.0014      36      74 ..      60      96 ..      32      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.3e-07
                HHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR 36 paLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                ++LkrLe +g++ ++  ++   ppr  Y lT+ Gr+ l+
  EHT98652.1 60 RTLKRLEVDGYILRTLYPE--VPPRVEYSLTELGRSFLK 96
                78*************9985..8*************9875 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.4e-06    0.0098      10      54 ..      32      74 ..      29      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.4e-06
                HHHHHHCTTTSEEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelar.rlglsksavsrilkrLvaaGLverr 54
                +L aL+ r    l+ +el r   ++ ++ +sr+lkrL+  G++ r+
  EHT98652.1 32 ILEALAERT---LRFNELHRhIGDVARQVLSRTLKRLEVDGYILRT 74
                788888888...999999997778*******************886 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   6.1e-06     0.014      12      68 ..      38      94 ..      29     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.1e-06
      HTH_34 12 vdeadfvelkeale.atdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGrea 68
                ++   f+el   ++ +    Ls  lk Le  gYi +++  +   pr  +++T+ Gr+ 
  EHT98652.1 38 ERTLRFNELHRHIGdVARQVLSRTLKRLEVDGYILRTLYPEVP-PRVEYSLTELGRSF 94
                45677888877775367778****************9999988.************75 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   7.8e-06     0.017      13      74 ..      44     100 ..      34     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.8e-06
  Replic_Relax  13 rqiarllfashratarrrLarLrelgllsr.lrkrvggarggsepyvYaLtpkGarllaaqra 74 
                   + ++r++ +  r+ ++r L+rL+  g++ r l+++v  +        Y Lt++G+ +l+ +++
    EHT98652.1  44 NELHRHIGDVARQVLSRTLKRLEVDGYILRtLYPEVPPRV------EYSLTELGRSFLKPMQQ 100
                   6789999999999**************9999****55555......5***********43333 PP

>> DUF3116  Protein of unknown function (DUF3116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.6e-05      0.08      26      84 ..      41      99 ..      20     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
     DUF3116 26 lqleeldeksvkkltkneLLytvYWLElkgyilRkee.kannkkrYelTekGellykelk 84
                l ++el+++   ++ +  L +t+  LE  gyilR  + ++  +  Y+lTe G  ++k ++
  EHT98652.1 41 LRFNELHRHI-GDVARQVLSRTLKRLEVDGYILRTLYpEVPPRVEYSLTELGRSFLKPMQ 99
                4445554444.66799999999999*********97614566778********9998766 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   5.4e-05      0.12      15      55 ..      32      72 ..      18      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
                HHHHHSTCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 15 ilraLaraegltaselaerl.dlskntlsyHLrvLeeagLve 55
                il aL  ++ l ++el++ + d++++ ls+ L+ Le  g++ 
  EHT98652.1 32 ILEAL-AERTLRFNELHRHIgDVARQVLSRTLKRLEVDGYIL 72
                89999.9999**********88*************8788775 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.3e-05      0.14      29      50 ..      53      74 ..      30      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.3e-05
                S-HHHHHHHHHHHHHTTSEEEE CS
        MarR 29 vskstvtrvldrLekkGlieRs 50
                v +  ++r+l+rLe +G+i R+
  EHT98652.1 53 VARQVLSRTLKRLEVDGYILRT 74
                78899**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 941.93
//
Query:       EHT98653.1  [L=157]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-16   59.6   1.5      3e-15   56.1   1.5    2.0  1  SnoaL            SnoaL-like polyketide cyclase
    1.1e-15   58.1   0.2    1.4e-15   57.7   0.2    1.2  1  SnoaL_2          SnoaL-like domain
    1.8e-05   24.8   0.1    2.7e-05   24.3   0.1    1.2  1  LEH              Limonene-1,2-epoxide hydrolase catalytic dom
     0.0079   16.1   0.5      0.023   14.6   0.5    1.8  1  Clathrin_H_link  Clathrin-H-link
  ------ inclusion threshold ------
      0.082   13.4   0.0       0.76   10.3   0.0    2.1  2  DsrC             DsrC like protein
       0.15   12.5   0.2        2.4    8.6   0.0    2.1  2  DUF4019          Protein of unknown function (DUF4019)


Domain annotation for each model (and alignments):
>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   1.5     1e-18     3e-15       2     121 ..      41     147 ..      40     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1e-18
                 HHHHHHHHHHHTT-HHHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TT-EEEEEEE CS
       SnoaL   2 lvlrfyeevwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaegdkvaarltftGthtgeflGipptGkkvkfeei 100
                 lv+ fy++++n++++ +++++va+d+ +hnp  +++ G++ + +f++++f + P  k ++ +  ++gd v ++++     +ge       G++v    +
  EHT98653.1  41 LVINFYNQFFNQHKVTEAARVVADDYRQHNP--GVPNGKAPLVNFFSDFFSKNPQSKARIVRSATDGDLVWLHVHS---TNGE----HDRGQAV----T 126
                 7899*************************88..9****************************************94...2232....2455555....6 PP

                 EEEEEETTEEEEEEEEECHHH CS
       SnoaL 101 tllrvedGkIveewdviDllg 121
                 +++rv++GkIve+wdvi+ + 
  EHT98653.1 127 DIFRVKNGKIVEHWDVIQAVP 147
                 9***************99876 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.2   4.8e-19   1.4e-15       4     102 .]      45     139 ..      42     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 4.8e-19
                 HHH.HHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEE.EEEEEEEEETTEEE CS
     SnoaL_2   4 fla.alnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgtipatgrgvtv.rgvdvfrvrdGkiv 100
                 f++  +n++++ ++a+++a+d+++++pg    G++ +  ff  +f + p+ + +i + ++dgd v+++++ t     +g++ +  +++d+frv++Gkiv
  EHT98653.1  45 FYNqFFNQHKVTEAARVVADDYRQHNPGV-PNGKAPLVNFFSDFFSKNPQSKARIVRSATDGDLVWLHVHST-----NGEHDRGqAVTDIFRVKNGKIV 137
                 554489*********************74.69*************************************998.....555555558************* PP

                 EE CS
     SnoaL_2 101 eh 102
                 eh
  EHT98653.1 138 EH 139
                 98 PP

>> LEH  Limonene-1,2-epoxide hydrolase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   8.9e-09   2.7e-05       6     112 ..      41     141 ..      36     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.9e-09
                 HHHHHHHHHHHT-HHHHHHHEEEEE.EEEETTTEEEE-HHHHHHHHHTT.TTT-EEEEEEEEEEEETTEEEEEEEEEEEE..TTEEEEEEEEEEEEEET CS
         LEH   6 vVeaFlaalqeddydaavrrlatdlevyeneglstihGraeaiallerlsadilavevkilriaadgsaVltERlDrliladGplivqltvmGvfeVed 104
                  V  F + + ++   +  +r+  d+ + +n+g+++  G+a  + ++  ++ +  + + +i+r a+dg +V       +  ++G       v+ +f+V++
  EHT98653.1  41 LVINFYNQFFNQHKVTEAARVVADDYRQHNPGVPN--GKAPLVNFFSDFFSKNPQSKARIVRSATDGDLVWLH---VHS-TNGEHDRGQAVTDIFRVKN 133
                 6778888888877777777777777799*****95..9********************************864...333.4777777789********* PP

                 TEEEEEEE CS
         LEH 105 grivlWRd 112
                 g+iv+  d
  EHT98653.1 134 GKIVEHWD 141
                 ***98655 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   7.6e-06     0.023       8      32 ..      41      65 ..      34      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.6e-06
  Clathrin_H_link  8 lyvqqFeqllaqgnykeAakvAaes 32
                     l+++ ++q+++q+++ eAa+v+a  
       EHT98653.1 41 LVINFYNQFFNQHKVTEAARVVADD 65
                     78899*****************986 PP

>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00025      0.76      40      87 ..      38      85 ..      16      99 .. 0.72
   2 ?    0.9   0.0      0.21   6.4e+02      40      49 ..     138     147 ..     130     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
        DsrC 40 ehwevikflreyyeeygvapairklvkalkkelgeekgnskelyelFp 87
                ++  vi+f+ +++++++v+ a+r+++++ +++     + +  l ++F 
  EHT98653.1 38 NRALVINFYNQFFNQHKVTEAARVVADDYRQHNPGVPNGKAPLVNFFS 85
                34569*********************9999965544444555555554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
        DsrC  40 ehwevikflr 49 
                 ehw+vi+++ 
  EHT98653.1 138 EHWDVIQAVP 147
                 8*****9885 PP

>> DUF4019  Protein of unknown function (DUF4019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.043   1.3e+02      71      94 ..      41      64 ..      27      68 .. 0.86
   2 ?    8.6   0.0   0.00079       2.4      54      99 ..      62     109 ..      57     113 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.043
     DUF4019 71 vviqfetefenkkqavEtvtlrke 94
                +vi+f  +f n+++++E   ++ +
  EHT98653.1 41 LVINFYNQFFNQHKVTEAARVVAD 64
                79***************8777666 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00079
     DUF4019  54 asaeearslpgaPdGeYvviqfetefenkkq..avEtvtlrkeedgkW 99 
                 ++  + +++pg+P+G+   ++f ++f +k+       v  + + d +W
  EHT98653.1  62 VADDYRQHNPGVPNGKAPLVNFFSDFFSKNPqsKARIVRSATDGDLVW 109
                 455667799**************9986554313555666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1225.04
//
Query:       EHT98654.1  [L=156]
Description: thioesterase superfamily protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-18   64.7   0.3    9.5e-18   64.3   0.3    1.2  1  4HBT      Thioesterase superfamily
    9.1e-07   29.4   0.6    1.3e-06   28.9   0.6    1.1  1  4HBT_3    Thioesterase-like superfamily
     0.0015   18.6   0.0      0.014   15.5   0.0    2.1  1  DUF4442   Domain of unknown function (DUF4442)


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.3   1.6e-21   9.5e-18       2      78 ..      58     146 ..      57     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.6e-21
                 SSB-HHHHHHHHHHHHHHHHHHTTST.............TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr.............gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                  ++hgGv++a lD+aag+++ s++++              +++ ++++++d+lrp+r + ++ +  r+lr+g+++ v +ve+++e+g ++
  EHT98654.1  58 HILHGGVTAAVLDVAAGMVCVSHALTrdeqisedvlrqrLSRMGTIDMRVDYLRPGRGE-RFIASSRLLRAGNKVSVARVELHNEQGLYI 146
                 58*********************************************************.**************************9876 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.6   2.1e-10   1.3e-06      10      83 ..      57     153 ..      51     155 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.1e-10
                 C...-HHHHHHHHHHHHHHT......................-S.SS..EEEEEEE-S---SEEEEEEEEEEE--SS-EEEEEEEEET.TEEEEEEEEE CS
      4HBT_3  10 a.g.yGGyvlAlalraaqrtv.....................pdprl..hslhvyFlrpgdagpviyhvervrdGrsfstrtvelsqg.grpiftatas 82 
                 + + +GG+++A++  aa                             +    + v++lrpg  +++i + + +r G ++s+ +vel  + g  i+tata+
  EHT98654.1  57 QhIlHGGVTAAVLDVAAGMVCvshaltrdeqisedvlrqrlsR---MgtIDMRVDYLRPGRGERFIASSRLLRAGNKVSVARVELHNEqGLYIATATAT 152
                 4566*********999995533666899999997777655431...2557***********************************88648899999999 PP

                 E CS
      4HBT_3  83 f 83 
                 +
  EHT98654.1 153 Y 153
                 6 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.4e-06     0.014       3      67 ..      13      79 ..      11     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.4e-06
                HHHHHHHHHHSGGGGGG--EEEEEETTEEEEEE---.GGGB-TTSS.B-HHHHHHHHHHHHHHHHHH CS
     DUF4442  3 elfsaavslkaPYfgtvgprieelepgraevrlkkr.rrvrNhigt.vHAiAicnlaElamGllaea 67
                +l+  ++   +P+ + +g+  ++lep++ae++++++   v N+ +  +H++  ++++++a+G+++  
  EHT98654.1 13 RLVGEIFIYHMPFNQALGLELDRLEPDYAEISFANKtMLVGNAAQHiLHGGVTAAVLDVAAGMVCVS 79
                6777889999*********************98765167999987626***************9743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1274.38
//
Query:       EHT98655.1  [L=291]
Description: outer membrane phospholipase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-96  320.5   7.8    9.9e-96  320.3   7.8    1.0  1  PLA1      Phospholipase A1


Domain annotation for each model (and alignments):
>> PLA1  Phospholipase A1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.3   7.8  5.5e-100   9.9e-96      10     257 .]      43     287 ..      36     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 320.3 bits;  conditional E-value: 5.5e-100
                 SXXSSTT-BEESS--EEE.EEEESS--TTTTTTSCTGGG-.-SEEEEEEEEEEEEEEETTTSTTEEEEEEEEEEEEE-TT-GGGTS-EEEEEEEEEEEE CS
        PLA1  10 eskkntfsltpykpnyllpvtytsspnkkplseaeeeekeekkveakfQlSlktklaedllgeksdlwlayTqksfWqvynseeSrpfretnyePelfl 108
                 e+++n+f+l+py++nyll +tyts++nk+++s+ ++++++ +k e+kfQlSl ++l+++++g++s l ++yTq+s+Wq+ n++eS+pfretnyeP++fl
  EHT98655.1  43 EQHDNPFVLYPYENNYLL-YTYTSDINKEAISSYNWAKNA-RKDEVKFQLSLAFPLWRGIVGDNSVLAASYTQRSWWQLSNKKESSPFRETNYEPQIFL 139
                 6899*************9.999*************99888.9********************************************************* PP

                 EEEEEEEETTEEEEEEEEEEEEEE----TTS--EEEEEEEEEEEEETTEEEEEEEEEEES--...TTSTTHHHHH-SEEEEEEEEETTEEEEEEEEEET CS
        PLA1 109 slpldlkllglrlrllelglnHqSNGrseplSRSwNrvyleavfekgnlavslkpwyripesekeddNpdiedylGrgelklayklkkhelsltlrnnl 207
                  +++d++++g++lr +e+g+nHqSNGrs+p+SRSwNrvy+++++++gn+  ++kpw ri+es+++ddNpdi++y+G+++ kl y+++++ +s+   +n+
  EHT98655.1 140 GWATDYSFAGWTLRDVEVGVNHQSNGRSDPTSRSWNRVYTRLMAQNGNFLAEIKPWFRISESANNDDNPDITKYMGYYRAKLGYAMGDSIFSVEGNYNW 238
                 *************************************************************************************************** PP

                 T.TTEEEEEEEEEEESSSSEEEEEEEEEEE-SSSTTTT-EEEEEEEEEES CS
        PLA1 208 rsenkgaveldysfplsknlrgyvqlfnGYGesLidYnkkqtrlgvGisL 257
                 + + +g + l++s+p+++++r+y+qlf+GYGesLidYn++qtr+gvG++L
  EHT98655.1 239 N-SGYGGATLGWSYPITQHVRFYTQLFSGYGESLIDYNHRQTRVGVGVTL 287
                 *.9********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2393.37
//
Query:       EHT98656.1  [L=608]
Description: ATP-dependent DNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-37  126.4   0.0    3.4e-36  123.5   0.0    2.3  2  RQC           RQC domain
    2.8e-26   92.0   0.0    3.1e-19   69.4   0.0    3.2  3  Helicase_C    Helicase conserved C-terminal domain
      1e-23   83.1   0.0    2.3e-23   81.9   0.0    1.7  1  HRDC          HRDC domain
    6.9e-22   78.0   0.0    1.3e-20   73.9   0.0    2.3  2  DEAD          DEAD/DEAH box helicase
    1.4e-15   57.8   0.2    3.6e-15   56.4   0.2    1.8  1  RecQ_Zn_bind  RecQ zinc-binding
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.041   13.9   0.0    1.5  1  ResIII        Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.33   9.7e+02      40      61 ..     149     170 ..     142     173 .. 0.84
   2 !  123.5   0.0   1.1e-39   3.4e-36       1     109 [.     406     514 ..     406     518 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.33
                 CCCCCTTGGGSTTTTTTTTS-H CS
         RQC  40 kkirqlghdklstfGigkdlsk 61 
                   i+q+ghd  + +G + ++ +
  EHT98656.1 149 HCISQWGHDFRPEYGALGQMRQ 170
                 5799***********9988776 PP

  == domain 2  score: 123.5 bits;  conditional E-value: 1.1e-39
                 ---EEE-HHHHHHHHHHHHHTTS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEE..SSSBEEE-CCGHHHHTS CS
         RQC   1 ppetvDvteeaqkilscvyrtgqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyLeedveeygvlkltekarevlkg 99 
                 pp+++D+ +eaqk+ls +yr+gqrfg+g+iv+vLrG ++ +ir++ghdkl+++G+gk+ s + w +++rqLi+ g++ +++  +++l+lte+ar+vl+g
  EHT98656.1 406 PPKRYDGLVEAQKALSSIYRVGQRFGMGYIVEVLRGANNHRIREQGHDKLPVYGLGKENSHEHWVSVLRQLIHLGLVTQNIAMHSALQLTEAARPVLRG 504
                 6899*********************************************************************************************** PP

                 SS--EEESHH CS
         RQC 100 eekvklreek 109
                 e +++l++++
  EHT98656.1 505 EVPLMLAVPR 514
                 ******9876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0042      12      70 ..      61     119 ..      53     123 .. 0.82
   2 !   69.4   0.0     1e-22   3.1e-19       8     110 ..     226     330 ..     219     331 .. 0.88
   3 ?    1.0   0.0      0.17   5.1e+02      55     100 ..     367     413 ..     361     427 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
                 HTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C  12 leeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvL 70 
                   +++g +l++++ i+ +++   +ll   +g+ +a+l+++++ ++++ ++++ ++g++++L
  EHT98656.1  61 ALVREGLTLVVSPLISLMKDqvDQLL--ANGVAAACLNSTMTREQQQNVMADCRNGRVKLL 119
                 45788999********6654534666..889**************************9977 PP

  == domain 2  score: 69.4 bits;  conditional E-value: 1e-22
                 HHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHH CS
  Helicase_C   8 ell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqri 104
                 +ll   + ++g+  +i++n++ ++e++   l+++g++v ++h+ + + +r ++ e+f++++ ++++at + ++Gi+ p+v++V++fd+prn++sy q  
  EHT98656.1 226 QLLryVQDQRGKCGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQET 324
                 44443367888888**********98555557889**************************************************************** PP

                 TTSSST CS
  Helicase_C 105 GRtgRa 110
                 GR+gR 
  EHT98656.1 325 GRAGRD 330
                 *****6 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.17
                 HHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C  55 reeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 ++ ++++f  +++++ L+  +  ++G   p+ n+ i +d+p+ ++ +
  EHT98656.1 367 KLNAMNAFAeAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPKRYDGL 413
                 567788887778999**************************988665 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   7.8e-27   2.3e-23       2      68 .]     535     601 ..     534     601 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 7.8e-27
                 HHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   2 lallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                  +l+ +Lr++R+++A+ee++ppyvvf+d+tLle+Ae++P +++++l+++gvg rkle++g+ +l +i
  EHT98656.1 535 RKLFAKLRKLRKAIADEENIPPYVVFNDATLLEMAEQMPVSASDMLSVNGVGHRKLERFGKPFLLMI 601
                 579***********************************************************99776 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   4.3e-24   1.3e-20       2     171 ..      28     186 ..      27     190 .. 0.83
   2 ?    1.4   0.0     0.079   2.3e+02      43     105 ..     232     294 ..     215     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 4.3e-24
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vd 99 
                 + Q+++i+++l+g+d+lv ++TG GK+l+++ip+l  v      ++  +l+v+P+ +L+++++++l   +  +   ++++++ +++++ +++ +ng v+
  EHT98656.1  28 PGQQAIINEALNGRDCLVVMPTGGGKSLCYQIPAL--V------REGLTLVVSPLISLMKDQVDQLLANGVAAA-CLNSTMTREQQQNVMADCRNGrVK 117
                 67*********************************..3......45699***************9977766422.2224444555555555556779** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpk 171
                 +++  p+rl+     ++l   q  +l +DEa++++++  +f++++ + l q++q   d +    v++l+AT+ +
  EHT98656.1 118 LLYIAPERLMMDNFLESLAHWQPAMLAVDEAHCISQWghDFRPEYGA-LGQMRQRFPDLP----VMALTATADE 186
                 *********873334577788999*************999*****99.9***9*999999....*******984 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.079
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskldngvdivvgtp 105
                 ++++g+  +i + +r+ +e+t+ +l++++  ++  +++ i   ++ar q +  + +++ivv+t 
  EHT98656.1 232 QDQRGKCGIIYCNSRAKVEDTAARLQSRGLSVG-AYHAGIDsAQRARVQEAFQRDDLQIVVATV 294
                 45566667899999999**********999988.5555555144445555555566*****996 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.2   1.2e-18   3.6e-15       2      66 .]     343     404 ..     342     404 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.2e-18
  RecQ_Zn_bind   2 qDvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgnCDnCl 66 
                   +D+  lr+ +e+++     ++ e++kl+am a++e++t Crr +ll+yFge  +++ CgnCD+Cl
    EHT98656.1 343 ADMAWLRKCLEEKQ-PGPLQDIERHKLNAMNAFAEAQT-CRRLVLLNYFGEGRQQP-CGNCDICL 404
                   79999999997665.678899999**********9999.************88888.*******6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.041       3     169 ..      25     184 ..      23     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kek 99 
                 ++r+ Q+ +i++ l+ +        l++m+TG GK+l++ ++ + +++      +l++ p +sl++   +++      a+  +++ ++++++ +     
  EHT98656.1  25 QFRPGQQAIINEALNGR------DCLVVMPTGGGKSLCY-QIPALVREG----LTLVVSPLISLMKDQVDQLLANGVAAACLNSTMTREQQQ-NvmADC 111
                 68999999999998655......599*********9986.555555553....689****99999988888855554443222222222222.223345 PP

                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...T......TTHHHHHT---SEEEEEESS- CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..k......swreilekfkeavllglTATp 169
                 ++   k+l +  ++l  d+       e+l + +  ++ +DEaH +++   +      +  +  + f++  +++lTAT 
  EHT98656.1 112 RNGRVKLLYIAPERLMMDN-----FLESLAHWQPAMLAVDEAHCISQWghDfrpeygALGQMRQRFPDLPVMALTATA 184
                 5557888888889999999.....89999999999********99886541445344444447778888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.35
# Mc/sec: 5212.37
//
Query:       EHT98657.1  [L=207]
Description: threonine efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-51  173.1  11.4    5.2e-51  172.9  11.4    1.0  1  LysE             LysE type translocator
    4.8e-05   23.1   3.2    4.8e-05   23.1   3.2    2.1  2  TerC             Integral membrane protein TerC family
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.026   14.2   0.0    1.5  1  OFeT_1           Ferrous iron uptake permease, iron-lead tran
      0.032   14.4   2.3      0.032   14.4   2.3    2.1  2  DUF3180          Protein of unknown function (DUF3180)
       0.14   11.8   2.6       0.21   11.2   2.6    1.3  1  SUR7             SUR7/PalI family
       0.22   10.8   4.8      0.036   13.4   0.9    1.6  2  Peptidase_U4     Sporulation factor SpoIIGA
       0.36   10.8   3.7       0.21   11.5   0.6    2.1  2  RseC_MucC        Positive regulator of sigma(E), RseC/MucC
        7.1    6.3   8.9       0.57    9.8   1.0    2.3  2  DUF4131          Domain of unknown function (DUF4131)
        7.7    6.8  11.6         59    4.0   2.9    3.2  2  DUF4064          Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9  11.4   2.6e-54   5.2e-51       2     192 ..      14     206 ..      13     207 .] 0.95

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 2.6e-54
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve.....as 95 
                 + l+spGp++++v++++++r++k+++l +lg++++ ++++ ++l+Gl+l+l+++ ++++i++++Gg+yLlw+g++ +r+a +   + + ++e     ++
  EHT98657.1  14 VALMSPGPDFFFVSQTAASRSRKEAMLGVLGITLAVMIWAAVALMGLHLILQKMAWLHQIIMVGGGLYLLWMGWQLIRSARQRHKQ-PVQQEpvvdlPK 111
                 679*****************************************************************************999864.44444589999* PP

        LysE  96 lvkpflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavkllle 192
                    +f+kgll++lsNPka+++++sv+s ++++    g  +r+ l++ + v++++wfsl+a ++a++ +r ++++++++++ ++gvl+ gf+++l+l+
  EHT98657.1 112 KGMSFIKGLLTNLSNPKAVIYFGSVFSLFIGN--DVGGLERWGLFVLISVETFAWFSLVAAIFALPWMRDKYQRAAKWVDGMAGVLFAGFGIHLILS 206
                 *******************************6..9999999999999***********************************************986 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   3.2   2.4e-08   4.8e-05      30      89 ..      35     103 ..      23     124 .. 0.68
   2 ?   -0.1   0.2      0.32   6.4e+02     133     160 ..     165     192 ..     150     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.4e-08
        TerC  30 qkkal..llGilgAlvlRillillavallel...f..dlilligglfLlytavkellekr..lenklvk 89 
                 +k+a+  +lGi++A+++ +++ l++ +l+ +   +  ++i++ ggl+Ll++++++++++r  +++++++
  EHT98657.1  35 RKEAMlgVLGITLAVMIWAAVALMGLHLILQkmaWlhQIIMVGGGLYLLWMGWQLIRSARqrHKQPVQQ 103
                 44444126899999999998888888877665551569999****************988421133333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.32
        TerC 133 ivitavilsilvlrflakllakllerfp 160
                   ++a i++++ +r  ++  ak+++ + 
  EHT98657.1 165 FSLVAAIFALPWMRDKYQRAAKWVDGMA 192
                 4456667777777777766666666554 PP

>> OFeT_1  Ferrous iron uptake permease, iron-lead transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.3e-05     0.026      32      95 ..      33     103 ..      24     131 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
      OFeT_1  32 knlkpflyavaGvli.vli..ptftlGkyivllpldy....vllvaavilfyfGyrllrsarryfkgikkk 95 
                 ++ k  + +v+G+++ v+i   +  +G +++l  + +    +++ +++ l+++G++l+rsar+  k+  ++
  EHT98657.1  33 RSRKEAMLGVLGITLaVMIwaAVALMGLHLILQKMAWlhqiIMVGGGLYLLWMGWQLIRSARQRHKQPVQQ 103
                 5666777788887652333223455677777665543111145556899**************99986655 PP

>> DUF3180  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.3   1.6e-05     0.032       3      63 ..      42     103 ..      40     109 .. 0.84
   2 ?   -0.4   0.3      0.58   1.2e+03       7      35 ..     165     194 ..     145     204 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
     DUF3180   3 aaavvaavagwllvrv.sygslp.plpwlaavvllvlavvelvlAlqvrrrirgrpgarqlep 63 
                 ++++ +av+ w++v +     ++ ++ wl  ++++  ++ +l++++q+ r  r+r +++++++
  EHT98657.1  42 VLGITLAVMIWAAVALmGLHLILqKMAWLHQIIMVGGGLYLLWMGWQLIRSARQR-HKQPVQQ 103
                 567888999999999988888888************************9999777.6666654 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.58
     DUF3180   7 vaavagwllvrvsygslp.plpwlaavvll 35 
                 + +va+++++ ++++++  +++w+ +++ +
  EHT98657.1 165 FSLVAAIFALPWMRDKYQrAAKWVDGMAGV 194
                 445555555555444444444444444433 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.6   0.00011      0.21     115     209 ..      47     173 ..      24     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
        SUR7 115 lfilhiialvlsfislvvgllaic....................................vspdnsrl.....lsflnlllsvlsflatllaalldtll 172
                 l ++++ a++l+ + l+++ +a++                                    v            +sf+  ll+ ls   +++ ++++  l
  EHT98657.1  47 LAVMIWAAVALMGLHLILQKMAWLhqiimvggglyllwmgwqlirsarqrhkqpvqqepvV------DlpkkgMSFIKGLLTNLSNPKAVIYFGSVFSL 139
                 34555567789999**********9999999999999999999988866665444444433......055555************************** PP

        SUR7 173 fvfvrkkin.lkefgikaslglkflafaWlalaaallv 209
                 f+   + +  l++ g  + +++  +a  W +l+aa+++
  EHT98657.1 140 FI--GNDVGgLERWGLFVLISVETFA--WFSLVAAIFA 173
                 **..888889*******999999999..******9976 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   1.8e-05     0.036      76     148 ..      30     101 ..       3     121 .. 0.83
   2 ?   -1.6   0.2      0.63   1.3e+03     115     131 ..     161     178 ..     127     200 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
  Peptidase_U4  76 afgpkslkeflkalllfylvsfllgGilfalsylllksknllvlllgalvaylllkllvkiikkkkkkekeiy 148
                   a +  + + +l +l++ ++v ++++ +l++l+  +l+++ +l+ ++ ++  ++ll++++++i++ ++++k+ +
    EHT98657.1  30 AASRSRKEAMLGVLGITLAVMIWAAVALMGLHL-ILQKMAWLHQIIMVGGGLYLLWMGWQLIRSARQRHKQPV 101
                   455566679999999******************.77778899999999999999999*****99999888755 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.63
  Peptidase_U4 115 n.llvlllgalvaylllk 131
                   +  ++ l++a++a+ +++
    EHT98657.1 161 TfAWFSLVAAIFALPWMR 178
                   123344444444443333 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   0.00011      0.21      70     128 ..      49     107 ..      31     108 .. 0.77
   2 ?   -0.8   0.1      0.67   1.3e+03      62      74 ..     163     175 ..     127     204 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
   RseC_MucC  70 vYllPllllilgallgsallgssellaalgallglvlgflivrllskrlkkkskfqpvi 128
                 v +   ++l+   l+ + ++  ++++ + g+l +l +g+ ++r  ++r k+  + +pv+
  EHT98657.1  49 VMIWAAVALMGLHLILQKMAWLHQIIMVGGGLYLLWMGWQLIRSARQRHKQPVQQEPVV 107
                 3334444555555555555589**************************99999999986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.67
   RseC_MucC  62 sllkaallvYllP 74 
                 + ++ ++ +++lP
  EHT98657.1 163 AWFSLVAAIFALP 175
                 3333333333333 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00028      0.57       5      60 ..      47     101 ..       3     115 .. 0.80
   2 ?    0.6   1.5      0.19   3.8e+02       4      47 ..     158     201 ..     155     206 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
     DUF4131   5 lalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandls 60 
                 la+ ++a+++l+ l l+l+ + ++  +++++ + l+ll +++ ++r++++ +++  
  EHT98657.1  47 LAVMIWAAVALMGLHLILQ-KMAWLHQIIMVGGGLYLLWMGWQLIRSARQRHKQPV 101
                 4444444444444444444.448888889999999999999999999998887655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.19
     DUF4131   4 plalvllalllllllllllllrrrprrrv.llllllllllallgf 47 
                 ++  +++++l++++++l +   + ++r   ++  ++  l+a++g+
  EHT98657.1 158 SVETFAWFSLVAAIFALPWMRDK-YQRAAkWVDGMAGVLFAGFGI 201
                 56667778888888888776543.333332555555555555544 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   5.5     0.054   1.1e+02      17      77 ..       3      63 ..       1      83 [. 0.69
   2 ?    4.0   2.9      0.03        59       6      99 ..      62     202 ..      59     206 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.054
     DUF4064 17 illglllllflfllssgefsqelteeqalsgedasavleflstllivlgvialiaivlgiv 77
                il+g ++l+ l+ l+s+  ++ +  ++a+s +  +a+l++l+ +l v++++a+ +  l ++
  EHT98657.1  3 ILFGTIALVHLVALMSPGPDFFFVSQTAASRSRKEAMLGVLGITLAVMIWAAVALMGLHLI 63
                5666666666666666666666666689999999999999999999999987766666555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.03
     DUF4064   6 iiLglIGgilgillglllllflfllssgefsqeltee.......................................qalsgedasavleflstllivlg 65 
                 +iL  +++  +i++++++l+ l++  +   s  +  +                                       + + g+d+   + +   +li   
  EHT98657.1  62 LILQKMAWLHQIIMVGGGLYLLWMGWQLIRSARQRHKqpvqqepvvdlpkkgmsfikglltnlsnpkaviyfgsvfSLFIGNDVGGLERWGLFVLISVE 160
                 566666666666666666666555544444444443345555555555555555555555555555555555444444444445555555555566666 PP

     DUF4064  66 vialiaivlgivgalllkknkk........vsGilfiiaail 99 
                 ++a +++v+ i+++ +++ +          ++G+lf  ++i 
  EHT98657.1 161 TFAWFSLVAAIFALPWMRDKYQraakwvdgMAGVLFAGFGIH 202
                 678888888888888888443345557788888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1563.39
//
Query:       EHT98658.1  [L=207]
Description: homoserine/homoserine lactone efflux protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-41  142.4  13.6    1.3e-41  142.2  13.6    1.0  1  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2  13.6     7e-46   1.3e-41       2     191 ..      15     202 ..      14     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 7e-46
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpf 100
                 +l+lspG+  + ++++gi++g++g+++ + g+++g a++i l+ +Gl +L++++  +++il+++G+ yL+wlg++++r+a   +  a ++    ++++f
  EHT98658.1  15 ILSLSPGSGAINTMSTGISQGYRGAVASISGLQVGLALHIALVGIGLGALFSQSLLAFEILKWAGAGYLVWLGIQQWRAAGAIDLNAMSKAM-PRRRLF 112
                 799*********************************************************************************99988887.9***** PP

        LysE 101 lkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavklll 191
                 +++++++l+NPk+i+f+++++++++ + +q+ + ++l+l +++v+++++ ++ +a+la r++ +++ +k+++ +n ++g l+i+++  l+ 
  EHT98658.1 113 KRAVMVNLTNPKSIVFLAALFPQFILP-HQPLMLQYLVLGITTVLVDIVVMIGYATLATRIAGWIKGPKQMKLMNRIFGGLFIAIGGLLAS 202
                 **************************7.9*********************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1668.22
//
Query:       EHT98659.1  [L=330]
Description: lysophospholipase L(2) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-56  189.0   0.2    9.7e-56  188.7   0.2    1.1  1  Hydrolase_4    Serine aminopeptidase, S33
    7.8e-28   97.8   0.1      1e-27   97.4   0.1    1.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.5e-10   42.1   5.7    2.2e-10   41.5   5.7    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00012   21.6   0.0       0.11   11.9   0.0    2.3  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.2   2.2e-59   9.7e-56       2     239 .]      52     312 ..      51     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 2.2e-59
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.....gkrghvpsfddyvdDlaaf.vekvkeehpelplfllGhSmGGlially 93 
                  ++k v+++v+G++e++ +y ela++L ++Gf+v+ lDhrG+Grs+      +rghv +f++yvdDl+++ +++++++h ++ ++ l+hSmGG+i +l+
   EHT98659.1  52 QHKRVILIVPGRIESYVKYPELAYDLFHCGFDVIVLDHRGQGRSDrllddSHRGHVVEFSHYVDDLETLyLKEIVSRHYQQ-RYALAHSMGGAILTLF 148
                  7899****************************************************************9568999888777.8*************** PP

  Hydrolase_4  94 llrypdkvaglilsaPalkikaklkappllklllkllgkllpklqv................snnlkadslsrdpevvaayeadplv.hgkitvrlll 174
                  l+r+p  ++++ l+aP+++i+     p  + l++k+l ++ ++  v                  n +++s  r+++ ++ y++dp +  g++t ++++
   EHT98659.1 149 LARQPGAFHAAALVAPMFGIAL----PLPAFLAHKILDWAEKRPAVregyalgtgrwrahpfGINRLTHSHERYRRSLRFYADDPAIrVGGPTYHWVR 242
                  *********************5....55555666777776666666778889********998899******************************** PP

  Hydrolase_4 175 elldamkrleeraakitlPllllhGeaDkvvdpeas...relyerlgsk..dktlklypglyHellnEpd 239
                  e + a+ ++++++++it+Pll+l++++D vvd++ +    ++++++g+     t +++ g++He+l+E+d
   EHT98659.1 243 EGIHAGRNILSQVDNITTPLLVLQASEDSVVDNRSQdlfCDAMAAAGHPcqGRTPQVISGARHEILFEKD 312
                  ************************************666333333333344899**************97 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.1   2.2e-31     1e-27       2     257 .]      56     312 ..      55     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 2.2e-31
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB...CHHSHHHHHHHHH..HHHHHCT..TSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin..ddygtasvaddld..rildalg..ddkltlvGhSmGGmialaya 91 
                    v++i++G  +s  ++ e  la++L ++gfdvi+lD+rG g+S++ ++  +  +  ++ ++ ddl+  ++++      ++ + ++hSmGG+i + ++
     EHT98659.1  56 VILIVPGRIESYVKYPE--LAYDLFHCGFDVIVLDHRGQGRSDRLLDDSHrgHVVEFSHYVDDLEtlYLKEIVSrhYQQRYALAHSMGGAILTLFL 149
                    79***************..****************************9989955666669999996666666652268999*************** PP

                    HHHGGGEEEEEEESE.....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHH CS
  Abhydrolase_1  92 aeyperVkalvllga.....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnassla 182
                    a+ p   +a +l+++     ++ +a l +  + +a++ p   +gya    r++a p++ ++l++++ r          + s rf+ +++++++++ 
     EHT98659.1 150 ARQPGAFHAAALVAPmfgiaLPLPAFLAHKILDWAEKRPAVREGYALGTGRWRAHPFGINRLTHSHER---------YRRSLRFYADDPAIRVGGP 236
                    ********************************************************************.........999**************** PP

                    HHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC.......HTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 183 tgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaql.......lpkkrlvvisdagHlaflegp 257
                    t++   + +   ++ ++ l +   ++n++ p lv+++++D +v++++++ ++++       + + +  vis+a H +++e++
     EHT98659.1 237 TYH---WVREGIHAGRNILSQ---VDNITTPLLVLQASEDSVVDNRSQDLFCDAmaaaghpCQGRTPQVISGARHEILFEKD 312
                    **9...666666666666666...667899***************99999999999989887779**************986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   5.7   4.9e-14   2.2e-10      22     210 ..      77     309 ..      57     318 .. 0.59

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 4.9e-14
                    HHCCTCEEEEE--TTSTS-GGCS--HHH..CHHHHHHHCCTT...........TTSEEEEEETCHHHHHHH...HHHCC..EEEEES-.....--- CS
  Abhydrolase_6  22 llaagvhvlapDlpGhGrsdpppldled..ladlaalldelaa.........gggpvvlvGHSlGGalala...aaplalvvgvlldppp...tal 100
                    l++ g+ v+++D +G+Grsd+  +d  +  ++++++++d+l +          + + ++++HS+GGa+ ++    +p+a++++ l++p+    + l
     EHT98659.1  77 LFHCGFDVIVLDHRGQGRSDRLLDDSHRghVVEFSHYVDDLETlylkeivsrHYQQRYALAHSMGGAILTLflaRQPGAFHAAALVAPMFgiaLPL 172
                    33334778*********9977776665656666788888887777788878888888*********96666433444449888*****55544555 PP

                    -TTTS----TTHHHHHH.....TT-CCCCHCCH...........S-HS..CCCCHHHC....CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCE CS
  Abhydrolase_6 101 pagllaaalelllalla.....llrllawlsre...........plpr..lfladeda....daawrarlarlaallaglgllpaaawadlpvpll 174
                    pa l++ +l ++++++a     +l + +w++              ++r  +f+ad++a     +++ +   +  a ++ l       +  +++pll
     EHT98659.1 173 PAFLAHKILDWAEKRPAvregyALGTGRWRAHPfginrlthsheRYRRslRFYADDPAirvgGPTYHWVREGIHAGRNILS-----QVDNITTPLL 263
                    666677777777777774443344446777333445555666663333457777777433335555555555555555555.....9999999999 PP

                    EE.CTT-C.........HHHHCHHCCCHSTTEEETCE...SSS.-HH CS
  Abhydrolase_6 175 vl.ggeDp.........lvprllerllaqagarlpvvlpgaGH.lph 210
                    vl ++eD           + +++++ +     r+p+v+ ga H  ++
     EHT98659.1 264 VLqASEDSvvdnrsqdlFCDAMAAAGHP-CQGRTPQVISGARHeILF 309
                    9876666633332222222233333332.333334889999984444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00053       2.4      13      99 ..      80     166 ..      73     170 .. 0.71
   2 !   11.9   0.0   2.5e-05      0.11     132     207 ..     250     328 ..     221     330 .] 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00053
                   CT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--G..GGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE-- CS
  Peptidase_S9  13 rGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvds..erlaitGgSyGGyltgaalnqrpdlFkaavaevpvv 99 
                    G+ v+v + rG g   +   d  +++   +ef+ +++ +e+l  +++v++  ++ ++  +S GG      l+++p  F+aa+ ++p++
    EHT98659.1  80 CGFDVIVLDHRGQGRSDRLLDD--SHRGHVVEFSHYVDDLETLYLKEIVSRhyQQRYALAHSMGGAILTLFLARQPGAFHAAALVAPMF 166
                   5777888888887754444444..4444566777777777777555544321245566679************************9986 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.5e-05
                   HHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEE...EEEETTS-S..STTSSHHHHHHHHHHHHHHHH CS
  Peptidase_S9 132 spyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvl...llifpdegH..gvgkprakveelarllaFlke 207
                   + +s++dn  +++plL++++ +D+ v   +   + +a+  +g++ +    ++  +++H   + k++ ++e l+++++F+++
    EHT98659.1 250 NILSQVDN--ITTPLLVLQASEDSVVDNRSQDLFCDAMAAAGHPCQgrtPQVISGARHeiLFEKDSMRAEALNTIVDFFLS 328
                   55788999..*****************************999996611156899****66566666677999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2366.53
//
Query:       EHT98660.1  [L=210]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-42  144.5   0.0    5.1e-42  144.4   0.0    1.0  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
      7e-12   45.4   0.0    2.4e-08   33.8   0.0    2.1  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
    4.7e-05   23.4   0.0    0.00023   21.2   0.0    2.3  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
     0.0025   17.4   0.3       0.75    9.5   0.0    2.3  2  UPF0181          Uncharacterised protein family (UPF0181)
  ------ inclusion threshold ------
      0.034   13.3   0.0          2    7.5   0.0    2.1  2  Trehalose_PPase  Trehalose-phosphatase
       0.16   12.2   0.1       0.82    9.9   0.0    2.1  2  Hydrolase        haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0   1.7e-45   5.1e-42       1     207 [.       5     210 .]       5     210 .] 0.98

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 1.7e-45
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTT.CE CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkenn.ve 97 
                  +++DlDGTLl+ +++++ +++e++++l ++gi++++ATGR++ +v ++ ++lg+  ++i++NGa ++   g+++++++++ + +++++ l  ++  v 
   EHT98660.1   5 VVSDLDGTLLSPEHRLTANARETLQQLVAQGIHFIFATGRHHIDVGQMRDKLGIPAYMITSNGARVHNPAGELVFSHNLDADIAHDLFGLQYHHPdVL 102
                  699******************************************************************************************999** PP

                  EEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE.EES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHH CS
  Hydrolase_3  98 illytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakil.ilkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkk 194
                   ++y++d+++v++     + +k+++ ++ + +++ +   l+++ i k++ +++++e+l  +e+++++++++ ++++ s +++le+m+ gvsKg+al++
   EHT98660.1 103 THVYRDDEWFVSRC---SPAEKDYFRESDFHYQVYEPGMLPTDGISKVFfTCEEPEHLVPMEQAIEARWGDRVNVSFSLPTCLEVMAGGVSKGHALEA 197
                  **************...89999999999999999999999999******9************************************************ PP

                  HHHHCT--GGGEE CS
  Hydrolase_3 195 lakelnisleevi 207
                  +ak+l+++l++++
   EHT98660.1 198 VAKQLGFTLKDCM 210
                  **********998 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   8.1e-12   2.4e-08       4      76 ..       4      74 ..       1      97 [. 0.87
   2 !    9.9   0.0   0.00017       0.5     144     183 ..     169     208 ..     146     210 .] 0.80

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 8.1e-12
                EEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE.. CS
        S6PP  4 llvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyyge 76
                ++vsdLD+tl+ ++++ +a+ +e l++  ++ + ++faTGR+  ++ +++ +  +  P ++its G+ +++  
  EHT98660.1  4 IVVSDLDGTLLSPEHRLTANARETLQQLVAQGIHFIFATGRHHIDVGQMRDKLGI--PAYMITSNGARVHNPA 74
                89***********************************************998766..89**********9843 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                 TS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGG CS
        S6PP 144 eldvkviyssgkdlDvlPkraskgeAlryLakkleleleq 183
                 + +v+v +s    l v++ + skg+Al+  ak+l++ l+ 
  EHT98660.1 169 GDRVNVSFSLPTCLEVMAGGVSKGHALEAVAKQLGFTLKD 208
                 56899*****************************998765 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.8e-08   0.00023       1      50 [.       5      55 ..       5     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.8e-08
                 EEEESTTTSEE.TTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHH CS
  Hydrolase_6  1 flfDidGvLwr.gdkaipgaaealnalraagkpvvllTNnsskseeeyakk 50
                 +++D+dG+L+  ++++  +a e+l++l a+g+++++ T +      ++ +k
   EHT98660.1  5 VVSDLDGTLLSpEHRLTANARETLQQLVAQGIHFIFATGRHHIDVGQMRDK 55
                 689*******8688899**************99999997776665555444 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0038        11       6      28 ..      14      36 ..       9      38 .. 0.77
   2 !    9.5   0.0   0.00025      0.75      22      41 ..     183     202 ..     182     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0038
     UPF0181  6 lsLtHeqQQqAVEkIqeLmaqGm 28
                ls  H    +A E  q+L+aqG+
  EHT98660.1 14 LSPEHRLTANARETLQQLVAQGI 36
                555566667899**********9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00025
     UPF0181  22 eLmaqGmssgeAIalVAqel 41 
                 e ma G+s g A + VA++l
  EHT98660.1 183 EVMAGGVSKGHALEAVAKQL 202
                 57****************98 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00068         2       3      81 ..       8      82 ..       6      91 .. 0.80
   2 ?    3.8   0.0    0.0088        26     155     178 ..     182     205 ..     179     210 .] 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00068
                     ETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHHHHHHH---SS..EEEEGGGTEEE-TT--EEE-HH CS
  Trehalose_PPase  3 DydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslkeeellvkvpel..glaaeHGaeirspsgedwenqa 81
                     D dGTl          +++++++++L++L ++  +  ++ +Gr   ++ ++ +  ++  +++ ++Ga +  p+ge   +  
       EHT98660.1  8 DLDGTLLSPEH-----RLTANARETLQQLVAQ-GIHFIFATGRHHIDVGQMRDKLGIpaYMITSNGARVHNPAGELVFSHN 82
                     88899877666.....89***********999.5589999*******8888777776336899********9998776644 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0088
                      EEEE-S---HHHHHHHHHHTS--- CS
  Trehalose_PPase 155 vevrpqgvsKGkaverlleslgsa 178
                      +ev + gvsKG a+e++ ++lg++
       EHT98660.1 182 LEVMAGGVSKGHALEAVAKQLGFT 205
                      899999*************99986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00027      0.82       3      27 ..       4      33 ..       2     100 .. 0.70
   2 ?   -2.2   0.0       1.4   4.3e+03     148     156 ..     194     203 ..     178     210 .] 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00027
                EEEEESBTTTBCHHHHHHHHHHHH.....C CS
                xxxxxxxxxxxxxxxxxxxxxxxx.....x RF
   Hydrolase  3 tvvfDkdGTLttgepsvedvivsa.....a 27
                 vv D+dGTL+  e++++   ++      a
  EHT98660.1  4 IVVSDLDGTLLSPEHRLTANARETlqqlvA 33
                6999*******9999988888877333222 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 HH.HHHHHTT CS
                 xx.xxxxxxx RF
   Hydrolase 148 ae.raanqlG 156
                 a  ++a+qlG
  EHT98660.1 194 ALeAVAKQLG 203
                 3335566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1516.47
//
Query:       EHT98661.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98661.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98661.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98661.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98661.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 811.37
//
Query:       EHT98662.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98662.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 947.82
//
Query:       EHT98663.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.0    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.1   0.0  4.7e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT98663.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.7e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98663.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98663.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98663.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98663.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98663.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98663.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98663.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98663.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98663.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98663.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT98663.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98663.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98663.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98663.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98663.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98663.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98663.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98663.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98663.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98663.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98663.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98663.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98663.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98663.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98663.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98663.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98663.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98663.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98663.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98663.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98663.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98663.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.73u 0.22s 00:00:00.95 Elapsed: 00:00:00.39
# Mc/sec: 4022.12
//
Query:       EHT98664.1  [L=51]
Description: HD superfamily hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-08   34.4   0.1      2e-08   34.3   0.1    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.1e-12     2e-08     213     253 ..       1      43 [.       1      45 [. 0.94

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.1e-12
                  GGGHHHHHHSSEEEEETTS-HHHHHHSSE..EE--GGGTHHHH CS
  Hydrolase_3 213 eNDieMLeaaglgvAmgnaseevkkaAdy..vtksnnedGVak 253
                  +ND+eML++ag g+ m+na++++k       v++sn++d+V +
   EHT98664.1   1 MNDVEMLSMAGKGCIMANAHQRLKDTLPEleVIGSNAQDAVPE 43 
                  7**************************9888*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 439.95
//
Query:       EHT98665.1  [L=445]
Description: sn-glycerol-3-phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-45  153.2  33.5    7.7e-42  143.5  29.7    2.0  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.01   16.0   9.3        1.6    8.9   1.9    4.2  4  Phage_holin_3_3  LydA holin phage, holin superfamily III
        4.5    5.4   9.8        0.3    9.3   3.6    2.0  2  DUF2070          Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5  29.7   1.3e-45   7.7e-42       1     353 []      34     400 ..      31     400 .. 0.83
   2 !   15.0   0.2   1.5e-06    0.0087     133     182 ..     396     443 ..     395     445 .] 0.90

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.3e-45
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslw.lllvlrvlq 95 
                 ++++++ ++l r ++++a+p +l e+ g+s   +g++l++ +++++++ +++G++sdr  +r +l +gl+l a+ +l++ f+   +s+  +++vl +++
  EHT98665.1  34 IFVGYAAYYLVRKNFALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLTLAAAVMLIMGFVpwaTSSImVMFVLLFIC 130
                 68899999999999******.99888.************************************************7777764454555559******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 G+++g+++p ++  +++w++++erg  +++++ + ++G  + pll  l +++++ W a+ y+ a+ ++  ++l+++l++++p + + + p+e       
  EHT98665.1 131 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNdWKAALYMPAFGAIAIAILAFALMRDTPQSCGLP-PIEAYkndyp 228
                 *********************************************9999999999*********999999997666664444444444.4444436666 PP

       MFS_1 189 .....kgtgpaplvp.awkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrrrr 276
                      +  +++ +++   k++l ++    l++++l + f++ +   +l ++p+yl+ev +++ l  +++++ ++  +g+++ ll+g++sd+   g+r +
  EHT98665.1 229 vdyneSHEEEFTARQiFMKYVLPNKL---LWYIALANVFVYLLrygILDWSPTYLKEVKHFT-LDKSSWTYFFYEYAGIPGTLLCGWMSDKvfRGNRGA 323
                 55543222223333333455555553...56666666555555666****************.888899999999999999**********77677777 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 + +++  l++aa  +++l+++ ++ + ++ ++ iGf  +g v  ++   a +lap+++agta+g+++++g+lgg++++
  EHT98665.1 324 TGVFFMTLVTAATVIYWLNPPGNPGVDMACMIAIGFlIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 400
                 777777777788889999999999999999999***888876.666677789999*******************9985 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-06
       MFS_1 133 GailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 G++ + ++ g+ ++++gW + f+++ + +++a+vl  ll + +++++k k
  EHT98665.1 396 GSVAASAIVGYTVDYFGWDGGFIVMIAGAVMAVVL--LLTMISEHRHKQK 443
                 889999**************************887..8889999988876 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00032       1.9      26      49 ..      21      44 ..      11      47 .. 0.83
   2 ?   -3.5   2.4         2   1.2e+04      43      68 ..     107     132 ..      71     135 .. 0.58
   3 ?   -3.1   0.0       1.5   9.2e+03      10      19 ..     155     164 ..     145     168 .. 0.79
   4 ?    8.9   1.9   0.00028       1.6      24      65 ..     383     424 ..     372     428 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00032
  Phage_holin_3_3 26 fsikellleivvSgfvGllvfllc 49
                      + ++l ++i++++fvG+ +++l+
       EHT98665.1 21 PRYRRLRWQIFIGIFVGYAAYYLV 44
                     5678899*************9986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2
  Phage_holin_3_3  43 llvfllceelglsqlltlaiaglsGy 68 
                      +l + ++ +++ s  + +++  ++G+
       EHT98665.1 107 MLIMGFVPWATSSIMVMFVLLFICGW 132
                      33455555555555555555555555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
  Phage_holin_3_3  10 GGlvsylmra 19 
                      GG+vs +++a
       EHT98665.1 155 GGIVSVWNCA 164
                      7888887775 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00028
  Phage_holin_3_3  24 rrfsikellleivvSgfvGllvfllceelglsqlltlaiagl 65 
                      +   +++l++ ++ S+ ++ +v++ ++++g+++ + ++iag+
       EHT98665.1 383 TAAGFTGLFGYLGGSVAASAIVGYTVDYFGWDGGFIVMIAGA 424
                      556688999*******************************97 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.6     5e-05       0.3     107     165 ..      56     129 ..      24     134 .. 0.67
   2 ?   -1.2   0.4     0.079   4.7e+02      18      56 ..     398     432 ..     313     442 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5e-05
     DUF2070 107 s...............lalvfalrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifa 165
                                 ++++ +++ +++ +vsd+s +++ lpa +++++a++l++ +++++++ ++++++l+f+
  EHT98665.1  56 VeqgfsrgdlgfalsgISIAYGFSKFIMGSVSDRSNPRVFLPAGLTLAAAVMLIMGFVPWATSSIMVMFVLLFI 129
                 0345555555555777****************************999999888888866666666666666555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.079
     DUF2070  18 llliillalligllaflssklfgillfglp.alvaflltl 56 
                 +++++++++ +++       + g +++++  a++a++l+l
  EHT98665.1 398 VAASAIVGYTVDYFG-----WDGGFIVMIAgAVMAVVLLL 432
                 222222222222222.....22222222222333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.34
# Mc/sec: 3908.50
//
Query:       EHT98666.1  [L=287]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-21   74.4  36.9    9.3e-12   45.3   9.6    2.0  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4  19.2   5.9e-13   1.1e-08       5     136 ..       2     129 ..       1     130 [. 0.97
   2 !   45.3   9.6   5.2e-16   9.3e-12       2     134 ..     139     274 ..     138     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 5.9e-13
        EamA   5 llallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsleP 102
                 ll+++ +++wa++f l+  +l  +v++++ + +r+ +a++++l+++ +++ ++     + +ll++l+g l   +++ll f a  ++s+s+  l+t ++P
  EHT98666.1   2 LLLIVTTILWAFSFSLIgEYLAGQVDSWFSVLMRLALAAVVFLPFLRWRGYRP-----STLLLYMLVGMLQLGIMYLLSFEAYLYLSVSEFLLFTVMTP 95 
                 899************9989999**************************99999.....999999*********************************** PP

        EamA 103 vftlilsvlllgekltlkqllgivlillGvllil 136
                 ++++++  ++ + +l    +++++l+++G+++i 
  EHT98666.1  96 LYVTLIYDVISRRPLRAGYIFSALLAVAGAAIIR 129
                 ******************************9985 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 5.2e-16
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfl.iagillliiallkegklaklslkd..wllllllgllgtvlafllffyalkktsasnasli 97 
                 +g+ll+ la +++a++ v  k+l ++ +  + t+++++ ++++l  ++a+  +g++ kl+ ++  w +l+ lg++++ l++++++y+ + ++a++ +++
  EHT98666.1 139 FGLLLVQLANICFAAGMVGYKRLQETRPVPQHTAFSWFyLGAVLIAVVAWAVWGNPHKLPTTSlqWGILVWLGVVASGLGYFMWNYGATQVDAGTLGIM 237
                 799*******************977777666666666647888888889998999867776666799******************************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvll 134
                 +++ +   l+   +++++k+ + ++++ +l++++ l 
  EHT98666.1 238 NNMHVPAGLLVNLAIWQQKPHWPSFIAGALVIVASLW 274
                 ******************************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2189.79
//
Query:       EHT98667.1  [L=159]
Description: uncharacterized DUF1456 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-54  181.3   0.3    4.1e-27   94.3   0.0    2.0  2  DUF1456   Protein of unknown function (DUF1456)


Domain annotation for each model (and alignments):
>> DUF1456  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   2.3e-31   4.1e-27       1      68 []       3      70 ..       3      70 .. 1.00
   2 !   85.2   0.2   1.6e-28   2.9e-24       1      67 [.      86     152 ..      86     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 2.3e-31
     DUF1456  1 NNdiLrrlRyaLdlkdedmveifklggvevtkeelsalLkkedeegyeeckdqvLesFLnGliikkRG 68
                NNdiLr++Ry+Ldl+d++mv+if+l+++ev +++++++Lkk+++ ++++c+d ++  FLnGli+++RG
  EHT98667.1  3 NNDILRSVRYMLDLNDAKMVAIFALAECEVPQADITSWLKKDEDAAFRPCPDVLMGYFLNGLIFHRRG 70
                9******************************************************************9 PP

  == domain 2  score: 85.2 bits;  conditional E-value: 1.6e-28
     DUF1456   1 NNdiLrrlRyaLdlkdedmveifklggvevtkeelsalLkkedeegyeeckdqvLesFLnGliikkR 67 
                 NN+ +++lR+a+dlk++d+ +i+k+++++v+++e+ a+++k+d+++y+ec+dq+L++FL+Gl++ +R
  EHT98667.1  86 NNIFMKKLRIAFDLKTTDIPDILKKANFTVSQAEIGAIFRKPDHKNYRECGDQILRNFLKGLTMIHR 152
                 9*************************************************************99777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1183.82
//
Query:       EHT98668.1  [L=305]
Description: homocysteine-binding DNA-binding transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-41  140.8   1.9    5.9e-41  140.1   1.9    1.3  1  LysR_substrate  LysR substrate binding domain
      4e-17   61.9   2.2    7.5e-17   61.0   2.2    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.11   12.3   1.9       0.17   11.7   1.0    1.8  2  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   1.9   9.9e-45   5.9e-41       2     208 ..      85     289 ..      84     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 9.9e-45
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++++ +Lr+++  + + ++l+p+l +fr+  P+v ++ ++g + +   +l++gelD++++++ +++sgl + p ++ ++ lv++pdhpLa+ e +
      EHT98668.1  85 EPQQTTLRVAIECHSCIQWLTPALDKFRQSWPQVVMDFKSGVTFDPQPALQQGELDIVLTSDILPRSGLFYSPMFDFEVRLVLAPDHPLAQVEHI 179
                     56789****************************************************************************************** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     s+++Lade l+ ++ +    d ++++l+ ag++p     v+++  ++++v+a +Gia lp+++v+ + ++g +++  l e  l ++ly+++r g+
      EHT98668.1 180 SPDALADEVLMIYPVQRQRLDIWRHFLQPAGISPAL-KNVDNTLLMIQMVSARMGIAALPHWVVESFEKQGLVITKTLGE-GLWSRLYAAVRDGE 272
                     **********************************87.78*************************99999*9999999999.************** PP

                     CCHHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflreal 208
                     +++p ++afi f+r+++
      EHT98668.1 273 QRQPVLEAFIHFARQHA 289
                     *************9985 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   2.2   1.2e-20   7.5e-17       1      60 []       4      63 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.2e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +++lr+++a+  +gs+++AA +L+ +q+a+s+q ++LE++lg +Lf+R+++ lr T++Ge
  EHT98668.1  4 FKHLRTLQALRNTGSLAAAAAQLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTPQGE 63
                589*********************************************9999******97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   2.9e-05      0.17       2      44 ..       7      48 ..       6      52 .. 0.89
   2 ?   -3.2   0.0       1.2   7.5e+03       4      13 ..      90      99 ..      89     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
                ..HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  2 leTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                l+TL+a l+n g+++a+A++Lh     l++    +e+ lg+ l
  EHT98668.1  7 LRTLQA-LRNTGSLAAAAAQLHQTQSALSHQFSDLEQRLGFRL 48
                677777.6778***************************99876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
                HHHHHHHTTT CS
      HTH_30  4 TLraylengg 13
                TLr+ +e++ 
  EHT98668.1 90 TLRVAIECHS 99
                9999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2616.17
//
Query:       EHT98669.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98669.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98669.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98669.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98669.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 839.34
//
Query:       EHT98670.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98670.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 997.79
//
Query:       EHT98671.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-97  326.8   2.7    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.9e-12   45.6   8.5    1.9e-11   44.6   8.5    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.046   12.3   7.1      0.072   11.6   7.1    1.3  1  FUSC             Fusaric acid resistance protein family
      0.046   12.9   1.3       0.09   12.0   1.3    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.05   13.2   1.7      0.072   12.6   0.5    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
        0.1   12.3   1.6       0.81    9.4   0.3    2.2  2  LXG              LXG domain of WXG superfamily
       0.13   12.6   3.2       0.93    9.9   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   11.8   4.7       0.24   11.2   4.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.22   11.8   2.3        0.6   10.5   2.3    1.7  1  HalX             HalX domain
       0.23   10.7   4.0       0.39    9.9   4.0    1.3  1  ALIX_LYPXL_bnd   ALIX V-shaped domain binding to HIV
       0.26   11.7   2.9       0.56   10.6   2.9    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.29   10.9  10.4       0.48   10.2  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.36   11.2   4.1       0.92    9.9   2.6    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.48   10.6   7.6       0.22   11.7   4.5    1.8  2  CREPT            Cell-cycle alteration and expression-elevate
        1.2    8.6   6.9        2.9    7.4   6.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          2    8.7   6.7        0.3   11.4   1.2    2.3  2  ABC_tran_CTD     ABC transporter C-terminal domain
        7.6    7.2   8.3         15    6.3   1.9    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.069        59     168     229 ..      35     111 ..      21     122 .. 0.49
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.069
  DDE_Tnp_IS66 168 qaaaealarigklyaierearea..................eaeerlalrqeesrpllaeleawleeqlkkvlpksklgk 229
                   q++a   + i++l+a+ ++++++                  eaeer ++ qee +++l el++     l++ l++s ++k
    EHT98671.1  35 QRVAAYASAINRLKALVAKLQRMqfgksseklrektarqvrEAEERISALQEEMAEVLGELHD---PALPQPLRQSSARK 111
                   444444455555555555554222332222221111222223455555555555555555555...33455555555555 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98671.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98671.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98671.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98671.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98671.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   8.5   2.2e-14   1.9e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98671.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGElhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************9666555555556667778888888888889999*********************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.1   8.5e-05     0.072     213     294 ..       4      89 ..       1     124 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT98671.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********877775556666666666666666666666554 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   0.00011      0.09      47     106 ..      34      90 ..      25      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98671.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   8.4e-05     0.072     144     223 ..      10      99 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k........e 223
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +        +
    EHT98671.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgelhdpA 99 
                   33444445555555556666667778999999999988886655439999999***********************88844444333330 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98671.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00095      0.81     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.3   0.1      0.14   1.2e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00095
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT98671.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98671.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                 56788888899999999999999999999988777 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0011      0.93      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    2.8   0.4      0.18   1.5e+02      33      53 ..      71      91 ..      68      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT98671.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98671.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.7   0.00028      0.24     114     195 ..      10      95 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveey 195
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e 
  EHT98671.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5788887777776655577777899999**********9862678999**********************************9986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98671.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3    0.0007       0.6       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y + + +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l el d
  EHT98671.1 37 VAAYASAINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGELHD 97
                789*****************************8752277888***************9876 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   0.00046      0.39      74     164 ..       9      96 ..       4     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00046
  ALIX_LYPXL_bnd  74 taelraelqkyreileeAsesDkivrqklqenkedlelLsgpeeeleaa.lpssssaaasesveeqirklrsllekldelkaereqllkdlk 164
                     +a lra lq+ ++++ + +e ++ ++q+++++ +++  L++  ++l++  + +ss++      e+ +r++r++ e++++l++e +++l +l+
      EHT98671.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqFGKSSEK----LREKTARQVREAEERISALQEEMAEVLGELH 96 
                     7899***********************************998888888855565543....3455555777777999999999888888886 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.9   0.00066      0.56      32     107 ..      21      95 ..       4      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskalleei 107
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l e+
  EHT98671.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5688999***********************9999877..66677888888999999************999887665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.4   0.00056      0.48      17      99 ..       5      89 ..       3      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
         ERM 17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeese 99
                + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ 
  EHT98671.1  5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMA 89
                66888999999****************************999999999999887335577789*******************986 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6    0.0011      0.92       9      65 ..      24      76 ..      21      94 .. 0.79
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT98671.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT98671.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98671.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98671.1 167 ACCSCDHI 174
                  35555554 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.5   0.00025      0.22      44     141 ..      10     115 ..       6     117 .. 0.78
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshiqsLPdLtelpd...vt 133
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  L d + lp+    +
  EHT98671.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLGELHDPA-LPQplrQS 107
                 56778999999********************99999999987615666776666655432111278888999999999999999998855.88877778 PP

       CREPT 134 gglapLPs 141
                 ++ +pLP 
  EHT98671.1 108 SARKPLPA 115
                 88899996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT98671.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.9    0.0034       2.9      71     152 ..      14      97 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL +l +
    EHT98671.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                   55666666666666666666667777888889999999999877644778888999***********************99987 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4       2.5   2.1e+03      36      55 ..      32      52 ..       7      59 .. 0.42
   2 ?   11.4   1.2   0.00035       0.3       1      37 [.      65     101 ..      65     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
  ABC_tran_CTD 36 lysdp.eklaelsaeleelea 55
                  l s+  ++ a + ++l++l a
    EHT98671.1 32 LLSQRvAAYASAINRLKALVA 52
                  222222333333333443333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpely 37 
                   kl  k  r+  e e++I aL+ee+ae+  el dp+l 
    EHT98671.1  65 KLREKTARQVREAEERISALQEEMAEVLGELHDPALP 101
                   788899999*************************974 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.9     0.017        15      22      53 ..      12      43 ..      10      67 .. 0.88
   2 ?    2.7   1.4      0.24     2e+02      34      55 ..      68      89 ..      42     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98671.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                667889********************887665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessg 55
                ++  rq+r+ +er+++l+e+++
  EHT98671.1 68 EKTARQVREAEERISALQEEMA 89
                4555666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1081  (0.0602934); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.36
# Mc/sec: 4294.91
//
Query:       EHT98672.1  [L=278]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-73  245.9   0.0    3.7e-73  245.6   0.0    1.1  1  DLH             Dienelactone hydrolase family
      2e-08   34.4   0.3    0.00023   21.1   0.3    2.7  3  BAAT_C          BAAT / Acyl-CoA thioester hydrolase C termina
    5.4e-07   29.3   0.2    4.4e-05   23.0   0.0    2.2  2  Peptidase_S9    Prolyl oligopeptidase family
    1.5e-05   24.8   0.1     0.0064   16.2   0.0    2.3  2  Abhydrolase_1   alpha/beta hydrolase fold
    2.6e-05   24.1   0.0    5.6e-05   23.0   0.0    1.5  2  Abhydrolase_2   Phospholipase/Carboxylesterase
     0.0011   19.6   1.9       0.07   13.7   1.9    2.3  1  Abhydrolase_6   Alpha/beta hydrolase family
      0.007   15.7   0.0        1.6    7.9   0.0    2.3  2  Hydrolase_4     Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.054   13.6   0.0       0.11   12.6   0.0    1.5  1  Abhydrolase_4   TAP-like protein
      0.068   12.6   0.1       0.47    9.8   0.0    2.1  2  AP_endonuc_2    Xylose isomerase-like TIM barrel
       0.14   11.1   0.0       0.18   10.8   0.0    1.2  1  Chlorophyllase  Chlorophyllase


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   0.0   2.1e-76   3.7e-73       2     216 ..      50     272 ..      49     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: 245.6 bits;  conditional E-value: 2.1e-76
         DLH   2 daylatpkna..kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstk 98 
                 +a+ a p++a  + pvv+v+qeifGv+++i+di++rla eGY+a+aP+lY+r++ dpnd++++ ++++elvskv++++vl+dl+ a ++++ ++  +  
  EHT98672.1  50 PAFYAKPQSAdgPLPVVLVVQEIFGVHEHIRDICRRLALEGYLAVAPELYFREG-DPNDYNDIPTLFKELVSKVPDSQVLADLDHAANWAARNG-GDIR 146
                 689999999999******************************************.****************************99999999888.888* PP

         DLH  99 kvgvvGfCmGGalalllaaevpevdaavafYG........lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaF 189
                 ++g++GfC+GG++++l+aa++p++ aava+YG        ++ +++++ a +++ap+l+l+g++D  ip ++ve++++al aan+++e+ vYp+agHaF
  EHT98672.1 147 RMGITGFCWGGRISWLYAAHNPQLRAAVAWYGrlvgektmKQQKHPIDIAVDLNAPVLGLYGGQDDGIPLESVEQMRQALHAANAKAEIIVYPDAGHAF 245
                 *************************************998888999***************************************************** PP

         DLH 190 andsresyneeaaedawervlelfkqv 216
                 ++d+r+sy++e+a+d+w+r+l +fkq+
  EHT98672.1 246 NADYRPSYHAESAKDGWARMLAWFKQY 272
                 **************************8 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00015      0.26      22      61 ..     146     185 ..     131     201 .. 0.78
   2 !   21.1   0.3   1.3e-07   0.00023     109     177 ..     193     259 ..     180     268 .. 0.72
   3 ?    3.6   0.1      0.03        53     189     209 ..     251     271 ..     250     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SS CS
      BAAT_C  22 dkigllGiSkGgelalllasflkkisavvlingsavvveg 61 
                 +++g+ G + Gg +  l a++ ++ +a+v+  g  v  ++
  EHT98672.1 146 RRMGITGFCWGGRISWLYAAHNPQLRAAVAWYGRLVGEKT 185
                 78***************************99987765544 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.3e-07
                 --GGG-.-SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---STT-----EEEET CS
      BAAT_C 109 ipveka.kgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepPyfplceavlak 177
                 i++    ++p+l + g +D  +p ++  e++ + L++a+ k   +++ Yp+aGH+++ +y p + a +ak
  EHT98672.1 193 IDIAVDlNAPVLGLYGGQDDGIPLES-VEQMRQALHAANAK--AEIIVYPDAGHAFNADYRPSYHAESAK 259
                 44443347888866666666666554.45778889888887..999****************99997765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHHHHHHHH CS
      BAAT_C 189 tkahakAqedsWkkilkFlkk 209
                 +++ha++++d W+++l+ +k+
  EHT98672.1 251 PSYHAESAKDGWARMLAWFKQ 271
                 679****************97 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.2    0.0089        16      43     107 ..     126     188 ..     113     198 .. 0.73
   2 !   23.0   0.0   2.5e-08   4.4e-05     137     208 ..     196     272 ..     176     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0089
                   HHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCS CS
  Peptidase_S9  43 nefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsd 107
                   + ++D+  aa ++a ++  d +r++itG   GG  +   ++ ++   +aava ++ +   +++++
    EHT98672.1 126 QVLADLDHAANWAA-RNGGDIRRMGITGFCWGGRISWLYAA-HNPQLRAAVAWYGRLVGEKTMKQ 188
                   55667666676665.555778************99988888.66666888888877766666665 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.5e-08
                   GGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S......STTSSHHHH.HHHHHHHHHHHHH CS
  Peptidase_S9 137 ldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegH......gvgkprakv.eelarllaFlkea 208
                   +     ++p+L + G +Dd +p+++ +++ +aL  ++ ++++ ++pd+gH      + + +  ++ +  ar+la++k++
    EHT98672.1 196 AVD--LNAPVLGLYGGQDDGIPLESVEQMRQALHAANAKAEIIVYPDAGHafnadyRPSYHAESAkDGWARMLAWFKQY 272
                   333..899******************************************66666533333444447888899999876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.6e-06    0.0064      64      97 ..     136     170 ..     103     178 .. 0.77
   2 !    6.5   0.0    0.0031       5.6     209     252 ..     198     245 ..     171     248 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.6e-06
                    HHH.HHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1  64 dri.ldalgddkltlvGhSmGGmialayaaeyper 97 
                    +++ ++  ++++  + G+++GG+i++ yaa +p+ 
     EHT98672.1 136 NWAaRNGGDIRRMGITGFCWGGRISWLYAAHNPQL 170
                    3445777777888899***************9994 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0031
                    HHHSEEEEEEETTCSSSCHHHHHHHHHC...HTS..EEEEEEETCSSSH CS
  Abhydrolase_1 209 nvlaptlvisgtsDplvppkaledlaql...lpk..krlvvisdagHla 252
                    + +ap+l ++g +D  +p ++ e+++q+     +  ++ +v++dagH  
     EHT98672.1 198 DLNAPVLGLYGGQDDGIPLESVEQMRQAlhaA-NakAEIIVYPDAGHAF 245
                    4556************************6652.15689999******76 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.1e-08   5.6e-05     103     201 ..     144     245 ..     131     249 .. 0.83
   2 ?   -3.1   0.1       3.1   5.6e+03      61      72 ..     263     274 ..     258     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.1e-08
                    -GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTT..TS-GGGGG-..EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEE CS
  Abhydrolase_2 103 pssriiigGFSqGaalalylaltlpkklggivafsgalplsqkles..satavtkkl..pilqiHgeeDpvvplalgkaakevlkkllkkvelksy 194
                    +  r  i GF  G+ ++   a   + +l+ +va  g+l+ ++++++  +++ ++++l  p+l ++g +D  +pl   +++ ++l +++ k e  +y
     EHT98672.1 144 DIRRMGITGFCWGGRISWLYAA-HNPQLRAAVAWYGRLVGEKTMKQqkHPIDIAVDLnaPVLGLYGGQDDGIPLESVEQMRQALHAANAKAEIIVY 238
                    56677899********965444.4457999*********998887622566667554449************************************ PP

                    TT--SS- CS
  Abhydrolase_2 195 eglaHsi 201
                    ++ +H+ 
     EHT98672.1 239 PDAGHAF 245
                    *****85 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
                    -EEE-SS-B--S CS
  Abhydrolase_2  61 mrmpaWfdlvgl 72 
                    +rm aWf  +g+
     EHT98672.1 263 ARMLAWFKQYGV 274
                    5799***98877 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.9   3.9e-05      0.07     136     211 ..     129     247 ..      11     265 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-05
                    CHHHCCCCHCHCCCGHH.....................HHCCHHCHTTCCHHTT-TTGC............................EEECTT-C. CS
  Abhydrolase_6 136 adedadaawrarlarla.....................allaglgllpaaawadlpvpl............................lvlggeDp. 181
                    ad     + +      a                        ++l++   + ++++ +++                            l  gg+D+ 
     EHT98672.1 129 AD----LDHA------AnwaarnggdirrmgitgfcwgGRISWLYAAHNPQLRAAVAWYgrlvgektmkqqkhpidiavdlnapvlgLY-GGQDDg 213
                    22....2222......2222222334444444332222111122222222444444444665555555555555555544444433233.688996 PP

                    ....HHHHCHHCCCH.STTEEETCE...SSS-HHH CS
  Abhydrolase_6 182 ....lvprllerlla.qagarlpvvlpgaGHlphl 211
                        +v ++ ++l+a  a+a++ +v+p+aGH+++ 
     EHT98672.1 214 ipleSVEQMRQALHAaNAKAEI-IVYPDAGHAFNA 247
                    6665444555555558899999.999999996554 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0052       9.4      56     105 ..     125     174 ..     120     187 .. 0.82
   2 !    7.9   0.0   0.00091       1.6     185     234 ..     194     245 ..     181     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0052
  Hydrolase_4  56 ddyvdDlaafvekvkeehpel.plfllGhSmGGliallyllrypdkvagli 105
                  +++++Dl+ + + ++++ ++  ++ + G  +GG i+ ly++++p+ +++++
   EHT98672.1 125 SQVLADLDHAANWAARNGGDIrRMGITGFCWGGRISWLYAAHNPQ-LRAAV 174
                  6889999999877665554446999*******************9.77665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00091
  Hydrolase_4 185 eraakitlPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyHel 234
                  + a ++++P+l l+G++D  ++ e  +++ ++l+++  + ++ +yp + H  
   EHT98672.1 194 DIAVDLNAPVLGLYGGQDDGIPLESVEQMRQALHAAnaKAEIIVYPDAGHAF 245
                  5566788************999999977777776665589999*****9975 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.2e-05      0.11      22      77 ..     188     247 ..     168     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
  Abhydrolase_4  22 pqrprdestakgaapvLllqnerDpaTPyegakklakalgga....vlvtvegeGHgala 77 
                    +q+ + ++ +  +apvL l + +D   P+e+ +++++al  a    + +++ ++GH + a
     EHT98672.1 188 QQKHPIDIAVDLNAPVLGLYGGQDDGIPLESVEQMRQALHAAnakaEIIVYPDAGHAFNA 247
                    33333333333479*************************9855565999*******8755 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.23   4.2e+02     111     165 ..      77     134 ..      74     148 .. 0.71
   2 ?    9.8   0.0   0.00026      0.47      45     121 ..     151     234 ..     144     274 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
                   HHHHHHHHHHHHHT.SEEEEE--TTTTSSSTC....HHHHHHHHHHTTTTEEEEEEHHHH CS
  AP_endonuc_2 111 eslneladyaekeg.vklalEtlagsgvelgd....eelarlldavdspnvgvclDtgHl 165
                   e+++++++ ++ eg   +a E   ++g  + +      +++l+++v++    v  D  H+
    EHT98672.1  77 EHIRDICRRLALEGyLAVAPELYFREGDPNDYndipTLFKELVSKVPDS--QVLADLDHA 134
                   7888899999888878888888888887777777778888888888885..445555454 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00026
                   EEEEECCCHSTCTHC....HTTCS.......HHHHHHHHHHHHHHHHHHTBSEEEEEBCC.....GBCTTTSGHHHHHHHHHHHHHHHHHHHH CS
  AP_endonuc_2  45 aslslftrfgypded....erear.......reesvdalkraielaaaLGapllvlhpGt.....agagpkgseeeawerlaeslneladyae 121
                   ++++  +r +++       +r+a+        e+  ++ k+ i++a +L+ap+l l  G+               e +e+++++l ++ ++ae
    EHT98672.1 151 TGFCWGGRISWLYAAhnpqLRAAVawygrlvGEKTMKQQKHPIDIAVDLNAPVLGLYGGQddgipL---------ESVEQMRQALHAANAKAE 234
                   555555555555555556433333666666778889*********************884444440.........555555555555555544 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.18      42     132 ..      59     158 ..      25     174 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
  Chlorophyllase  42 eaGtypvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp.Psaqdeidsa.aevieWlseg.lkavlp......tsveanlsklalvGh 127
                      +G  pvvl++  ++   ++  ++   +a  G++ vaP+ly   + P+  ++i +   e++  ++   + a l+          ++++++ ++G 
      EHT98672.1  59 ADGPLPVVLVVQEIFGVHEHIRDICRRLALEGYLAVAPELYFREGdPNDYNDIPTLfKELVSKVPDSqVLADLDhaanwaARNGGDIRRMGITGF 153
                     57999***********************************9888879999988653134444443211112222121132444456666666666 PP

  Chlorophyllase 128 srGGk 132
                       GG+
      EHT98672.1 154 CWGGR 158
                     66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2159.30
//
Query:       EHT98673.1  [L=253]
Description: uridine phosphorylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-40  136.9   1.3    7.1e-40  136.7   1.3    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   1.3     4e-44   7.1e-40       2     209 ..      21     228 ..      20     253 .] 0.85

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 4e-44
                 EEEEESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEES CS
   PNP_UDP_1   2 iaiivgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainf 100
                 +ai+ g+p++v+ +a    ++ ++  ++r+f+ ++ +l gkpvv++stGiG p+++ +a+ +l + +gv++++r+Gt G+++p+++vGDv+++++++++
  EHT98673.1  21 LAIVPGDPERVKKIAGL-MDDPRHLASHREFTSWLAKLDGKPVVVCSTGIGGPSTS-IAVEELAQ-LGVRTFLRVGTTGAIQPHINVGDVLVTTASVRL 116
                 89***************.9999999999****************************.99999998.55******************************* PP

                 SSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CH...........HHHHH......HHHHTC-CEEESSHHHHHH CS
   PNP_UDP_1 101 dgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaet...........eaelr......llrrlgadaveMEtaavaq 182
                 dg s         + +p++++a ad  ++++l++aaea g+k+h G++a++d+fy  +               r       ++++g+ + eME+a +++
  EHT98673.1 117 DGASL--------HFAPMEFPAVADFTCTTALVAAAEACGAKTHIGITASSDTFYPGQerydtfsgrvvN---RfqgsmqEWQQMGVLNYEMESATLLT 204
                 *****........*********************************************999999986540...24466669****************** PP

                 HHHHTT--EEEEEEE.EETTTBETTCTC CS
   PNP_UDP_1 183 lArelgipfaairvv.sdlaaggadaea 209
                 +++  g++++ +++v  +    ++ +e 
  EHT98673.1 205 MCASQGLRAGMVAGViVN----RTQKEI 228
                 **********99999233....333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2125.41
//
Query:       EHT98674.1  [L=499]
Description: putative recombination limiting protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-104  347.4   0.8   5.3e-104  347.4   0.8    2.6  3  RmuC            RmuC family
     0.0011   18.8   9.2       0.26   11.1   0.1    2.4  2  Phage_GP20      Phage minor structural protein GP20
      0.005   17.0  22.3      0.005   17.0  22.3    3.2  3  Tropomyosin_1   Tropomyosin like
  ------ inclusion threshold ------
       0.18   10.9   1.8       0.38    9.9   0.8    2.1  2  Aminotran_1_2   Aminotransferase class I and II
       0.18   11.5   0.1        0.4   10.4   0.1    1.5  1  G6B             G6B family
        4.3    6.1   5.2        0.8    8.5   0.9    1.8  2  DUF3573         Protein of unknown function (DUF3573)


Domain annotation for each model (and alignments):
>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   9.8      0.32   9.6e+02       7      43 ..      45      81 ..      23     115 .. 0.47
   2 ?   -1.5   1.2      0.37   1.1e+03       5      57 ..      92     147 ..      80     156 .. 0.51
   3 !  347.4   0.8  1.8e-107  5.3e-104       1     289 [.     164     460 ..     164     462 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.32
        RmuC  7 lkplkeklekfeekveeeskeeaeeleslkeqlkelq 43
                 ++ ++++e++++++++ ++e  + ++sl+ + ++lq
  EHT98674.1 45 QQRQQQHIEQLQQQLQQREQELRQLHGSLSGANERLQ 81
                2222333333333333333333333333322222222 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.37
        RmuC   5 ellkplkeklekfeekveees...keeaeeleslkeqlkelqelneqlgdeaenLt 57 
                 +l+++l+++le  + +  e      + +e++ + +e+ + l++ +++l+ + enL+
  EHT98674.1  92 QLTRELRNQLEVNSAQEAELRevtIRLEETRFAAEEKQRLLTNSEQRLSAQFENLA 147
                 34444444444333332222212133333334446666666666666666666665 PP

  == domain 3  score: 347.4 bits;  conditional E-value: 1.8e-107
        RmuC   1 eqleellkplkeklekfeekveeeskeeaeeleslkeqlkelqelneqlgdeaenLtkaLk.nsktrGnwGEvqLerilessgleegeeyetqvslkde 98 
                 ++l++l  pl+e+l+ f+++v+e+  +ea+e+++l++++++lq+ln+q+ +ea nLtkaLk ++k++GnwGEv+L+r+le+sgl+eg ey+ qvs+++e
  EHT98674.1 164 QSLNSLIGPLREQLDGFRRQVNESFGAEARERHTLTHEIRQLQQLNAQMAQEALNLTKALKgDNKIQGNWGEVVLSRVLEASGLREGYEYDIQVSMQNE 262
                 5899********************************************************************************************999 PP

        RmuC  99 ege.lrpDvvvklpggkklviDsKvpleaYerlveaeddeereealkahaksvkkhikeLseKdYeele...sldyvlmFiPiEsayaealeadpeLle 193
                 +++ ++pDv+v+lp+gk++viD+K+ l aYer+++a+dd ere+a +ah+ +v+ hi+ L +KdY++l+   sldyvlmFiP+E+a+ +a++++peL+ 
  EHT98674.1 263 QQSrMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNADDDIEREQAIQAHISAVRGHIRLLGRKDYQQLPglrSLDYVLMFIPVEPAFLLAIDRQPELIG 361
                 8755****************************************************************7788*************************** PP

        RmuC 194 ealrkkVvlasPttLlalLrtvamlwrqeaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkkle...gnilrkaeklkelgvkek 289
                 eal+++++l+sPttLl++Lrt+++lwr+e+q++na++iae++++lydk++ f++d++ +g++l+kaq+sy++a+kkl+   gn++ + e +++lgv+ k
  EHT98674.1 362 EALQQNIMLVSPTTLLVALRTINNLWRYEHQSRNAQRIAERAARLYDKMRLFVDDMSGIGHSLDKAQNSYREAMKKLAegrGNLIAQTEGFRDLGVEVK 460
                 ***********************************************************************************************9977 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   5.7   0.00051       1.5      22      77 ..      47     102 ..      35     133 .. 0.83
   2 !   11.1   0.1   8.8e-05      0.26       3      86 ..     147     230 ..     145     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00051
  Phage_GP20  22 eveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakia 77 
                 + ++  ++l++ql++r+++L +L ++  +++e  +q++ + ++ ++   e  ++++
  EHT98674.1  47 RQQQHIEQLQQQLQQREQELRQLHGSLSGANERLQQLDYWRNESEQLTRELRNQLE 102
                 55677899******************999999999**********99999888775 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.8e-05
  Phage_GP20   3 ikkvmkaengkditkakldeveeerdtlkeqlkdrdkqL.edLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldnaie 86 
                 ++ ++ +++g  + +++ +++++    l eql+    q+ e + ++a +  +L+ +i +lq+ n++  +e+ +  ++lk dn i+
  EHT98674.1 147 ANRIF-ENSGRRVDEQNRQSLNSLIGPLREQLDGFRRQVnESFGAEARERHTLTHEIRQLQQLNAQMAQEALNLTKALKGDNKIQ 230
                 57788.889999999999999999999999999999998456***************************************9997 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0  22.3   1.7e-06     0.005      22     125 ..      37     140 ..      26     154 .. 0.87
   2 ?    2.0   1.7     0.071   2.1e+02      49      92 ..     175     219 ..     152     230 .. 0.47
   3 ?    0.2   0.0      0.25   7.6e+02      88     105 ..     423     440 ..     384     450 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
  Tropomyosin_1  22 kvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkv 117
                    + + l++ ++++ q+i++L++++qq e+e+ +l  +l+ a+e +++ +  + ++e+ltr ++   e     +++L+e t +L+et  +aee  R  
     EHT98674.1  37 ERRLLNEAQQRQQQHIEQLQQQLQQREQELRQLHGSLSGANERLQQLDYWRNESEQLTRELRNQLEVNSAQEAELREVTIRLEETRFAAEEKQRLL 132
                    567789999999***********************************************987655555677899*******************999 PP

  Tropomyosin_1 118 kaLeqerd 125
                    ++ eq+  
     EHT98674.1 133 TNSEQRLS 140
                    98888754 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.071
  Tropomyosin_1  49 eevekleeklkeak.ekaeesekkktnnealtrkiqlLEeelees 92 
                    e+++    +++e+  ++a e +++  +  +l++ + ++ +e+ + 
     EHT98674.1 175 EQLDGFRRQVNESFgAEARERHTLTHEIRQLQQLNAQMAQEALNL 219
                    555555555555431223333333333334444444443333332 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.25
  Tropomyosin_1  88 eleesdkkLkettekLre 105
                     l++++++ +e+++kL e
     EHT98674.1 423 SLDKAQNSYREAMKKLAE 440
                    467777777777777765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.8   0.00013      0.38     223     291 ..      11      69 ..       8     113 .. 0.70
   2 ?   -1.7   0.0      0.41   1.2e+03     273     292 ..     391     410 ..     367     424 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
                    TSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 223 fGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrde 291
                    +GlaG+ vG+il++ +v  ql+++s+         +++++a + +++   ++e+ +q+lq+r +elr+ 
     EHT98674.1  11 LGLAGLGVGWILAQMRVSHQLASFSTE-------RRLLNEAQQRQQQ---HIEQLQQQLQQREQELRQL 69 
                    79**********************999.......6666666666665...4444444444444444443 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.41
                    HHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 273 eleemrqrlqkrrkelrdeL 292
                    + + ++qr+++r+ +l+d++
     EHT98674.1 391 HQSRNAQRIAERAARLYDKM 410
                    55678899999999999987 PP

>> G6B  G6B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00014       0.4     133     192 ..       7      66 ..       3      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
         G6B 133 aglalglgalGvawwlrrrsppallrplprfaplvkaeaqrevkeeepkeagdldqeksl 192
                 +++ lgl++lGv w l +   +++l ++++   l +  +qr++++ e  +++ +++e++l
  EHT98674.1   7 ISICLGLAGLGVGWILAQMRVSHQLASFSTERRLLNEAQQRQQQHIEQLQQQLQQREQEL 66 
                 6789**************************999999888888875555444433335554 PP

>> DUF3573  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.9   0.00027       0.8      17      77 ..      21      85 ..       4     118 .. 0.68
   2 ?   -1.3   0.2      0.24   7.3e+02      25      61 ..     178     214 ..     140     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00027
     DUF3573 17 ilayseds...asyaesneqtsksnlidkelilklqkqikelqaeinhlketkns.nesaqftty 77
                ila +  s   as++      ++++  +++ i +lq+q+++ + e+++l+    + ne  q   y
  EHT98674.1 21 ILAQMRVShqlASFSTERRLLNEAQQRQQQHIEQLQQQLQQREQELRQLHGSLSGaNERLQQLDY 85
                5555555611144555555566777888999******************9776554665555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.24
     DUF3573  25 asyaesneqtsksnlidkelilklqkqikelqaeinh 61 
                 + ++   +++ ++++ +++++++  +q+++l+a++ +
  EHT98674.1 178 DGFRRQVNESFGAEARERHTLTHEIRQLQQLNAQMAQ 214
                 5566666677777888888888888888888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2661  (0.148419); expected 358.6 (0.02)
Passed bias filter:                      926  (0.0516482); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.04u 0.30s 00:00:01.34 Elapsed: 00:00:00.45
# Mc/sec: 3361.40
//
Query:       EHT98675.1  [L=252]
Description: 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/S-adenosylmethionine:2-DMK methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-103  344.6   0.0   2.6e-103  344.4   0.0    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    3.9e-23   82.0   0.0    8.5e-23   80.9   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      1e-21   77.3   0.0      2e-21   76.4   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    7.1e-19   68.1   0.0    1.1e-18   67.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    7.2e-16   58.5   0.0    9.8e-16   58.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      1e-11   45.5   0.0    1.8e-11   44.6   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    2.4e-08   34.0   0.0    3.9e-08   33.3   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0002   21.0   0.0    0.00033   20.2   0.0    1.3  1  MTS              Methyltransferase small domain
      0.001   18.8   0.0     0.0021   17.8   0.0    1.6  1  UPF0020          Putative RNA methylase family UPF0020
     0.0022   17.6   0.0      0.011   15.4   0.0    2.0  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
  ------ inclusion threshold ------
      0.017   14.2   0.0      0.029   13.4   0.0    1.3  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.018   14.7   0.0      0.032   13.8   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
      0.025   14.3   0.0       0.12   12.0   0.0    1.9  2  GCD14            tRNA methyltransferase complex GCD14 subunit
       0.11   12.0   0.2        2.5    7.7   0.0    2.6  2  Sec_GG           SecD/SecF GG Motif


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.0    2e-106  2.6e-103       4     233 .]      21     251 ..      15     251 .. 0.98

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 2e-106
                      XXXXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTS CS
  Ubie_methyltran   4 lkeekvkevfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegk 97 
                       k +kv++vf+sva kyDlmnd++s+g+hr+Wk+f+++ ++ +rg++vlD+agGtgDl++k+s+ vge+g+vv++Din++mLk+g++kl++ g 
       EHT98675.1  21 EKADKVADVFHSVAAKYDLMNDLMSFGVHRVWKRFTIDSSGMRRGQRVLDLAGGTGDLTAKFSRLVGETGQVVLADINSSMLKMGREKLRNLGI 114
                      34566****************************************************************************************9 PP

                      S.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHH CS
  Ubie_methyltran  98 i.nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsyry 190
                      + n+ ++qanae+Lpf d+ fD++t+sfGlrnvt+k+kaL +++rvlkpGGrl+vlefsk+ ++ ls+ay++ys+++lP++G+l+a+d++syry
       EHT98675.1 115 VgNVSYVQANAEALPFPDNYFDCITISFGLRNVTEKEKALASMFRVLKPGGRLLVLEFSKPVIEPLSKAYDAYSFHILPRIGQLVAQDAESYRY 208
                      99******************************************************************************************** PP

                      HHHHHHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEEE CS
  Ubie_methyltran 191 LvesirafPdqetlkeliedaGfksveyesltgGvvaihigvk 233
                      L+esir++Pdqetlk++++d Gf++ +y+++tgG+va+h+g+k
       EHT98675.1 209 LAESIRMHPDQETLKAMMNDVGFENTTYSNMTGGIVALHRGFK 251
                      *****************************************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   6.6e-26   8.5e-23       1      97 []      68     165 ..      68     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 6.6e-26
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vLdl+ GtG+lt+++++ +g  ++v+  Di+++ml+  re++++ g+  nv++vq++ae+lpf+d+ fD++++s++l  ++  + ekal+ ++r
       EHT98675.1  68 VLDLAGGTGDLTAKFSRLVGeTGQVVLADINSSMLKMGREKLRNLGIvgNVSYVQANAEALPFPDNYFDCITISFGLRNVT--EKEKALASMFR 159
                      9******************779*********************9999***************************9999988..5679******* PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      vLkpgG
       EHT98675.1 160 VLKPGG 165
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.6e-24     2e-21       1      96 []      69     169 ..      69     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.6e-24
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLk 89 
                      Ld++ GtG l++++ + +   ++vv  D++  mlk+ +ek ++ g+  +v++v+a+ae lpf+dn+fD++++s+ l +v + ekal+ + RvLk
       EHT98675.1  69 LDLAGGTGDLTAKFSRLVgetGQVVLADINSSMLKMGREKLRNLGIvgNVSYVQANAEALPFPDNYFDCITISFGLRNVTEKEKALASMFRVLK 162
                      89*************7777999************************************************************************ PP

                      EEEEEEE CS
  Methyltransf_11  90 pgGllvi 96 
                      pgG+l++
       EHT98675.1 163 PGGRLLV 169
                      ****975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   8.2e-22   1.1e-18       3     127 ..      64     185 ..      62     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 8.2e-22
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      +g rvlDl+ GtG+lt ++ +++g+ ++vv+ Di+  +++  re++++lg+  nv+  q+++e+l+  + d+ fD i+    l  +++++k+l 
       EHT98675.1  64 RGQRVLDLAGGTGDLTAKFSRLVGETGQVVLADINSSMLKMGREKLRNLGIVgNVSYVQANAEALP--FPDNYFDCITISFGLRNVTEKEKALA 155
                      6789**********************************************999*************..***********9999*********** PP

  Methyltransf_31  96 eiervlkpggilliedprllaelpakveeesk 127
                      +++rvlkpgg+ll+ +++  + +++ +++  +
       EHT98675.1 156 SMFRVLKPGGRLLVLEFS--KPVIEPLSKAYD 185
                      *****************9..555555444444 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   7.6e-19   9.8e-16      21     164 ..      63     235 ..      42     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 7.6e-19
  Methyltransf_23  21 raggrvLdiGcGtGillevl.rengf..svtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      r+g+rvLd++ GtG l+  + r  g   +v++ D+++ + ++ +          +   +q++++  ++p+++fd+I+ +++l +v   +++l++
       EHT98675.1  63 RRGQRVLDLAGGTGDLTAKFsRLVGEtgQVVLADINSSMLKMGReklrnlgIVGNVSYVQANAEALPFPDNYFDCITISFGLRNVTEKEKALAS 156
                      7889**********99999956667679********999999999****9855566667777789999************************** PP

  Methyltransf_23 105 iatllkpgGylllseplasl.....................kedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      +++ lkpgG+ll++e+ ++                        ++++++++yl++    +   + ++lk ++++ G+e+ +
       EHT98675.1 157 MFRVLKPGGRLLVLEFSKPVieplskaydaysfhilprigqLVAQDAESYRYLAES--IRMHPDQETLKAMMNDVGFENTT 235
                      ****************99999999999******99999987699999999999977..5555577*************975 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.4e-14   1.8e-11       1      99 []      69     167 ..      69     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.4e-14
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L++ +GtG+l++ + +   ++ +++  Di++s+++  +ekl+  +     nv + + +++ l+ + ++fD +++s+ l ++ +++++l+++ ++
       EHT98675.1  69 LDLAGGTGDLTAKFSRLVgETGQVVLADINSSMLKMGREKLRNLGIVG--NVSYVQANAEALPFPdNYFDCITISFGLRNVTEKEKALASMFRV 160
                      89************99999***************99999999999754..66666666555555569*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      LkpgGrl
       EHT98675.1 161 LKPGGRL 167
                      *****97 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.1e-11   3.9e-08      71     171 ..      62     169 ..      53     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.1e-11
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEEEESSBBSS--HH......HHHT CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdaihvgaaapeiPea......lidQ 162
                 +++g+rvL++ +G+G lta ++rlvge+g+vv  +   ++ +  +++l++l++  nv+ v +  +    +   +d i ++ +  ++ e+      +++ 
  EHT98675.1  62 MRRGQRVLDLAGGTGDLTAKFSRLVGETGQVVLADINSSMLKMGREKLRNLGIVgNVSYVQANAEALPFPDNYFDCITISFGLRNVTEKekalasMFRV 160
                 7899************************************************998******999887777789*******9999998633333337999 PP

                 EEEEEEEEE CS
        PCMT 163 LkeGGrlvv 171
                 Lk+GGrl+v
  EHT98675.1 161 LKPGGRLLV 169
                 ******987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.6e-07   0.00033      31     138 ..      64     170 ..      55     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.6e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle..vevvasdvle.eveekkfdlivsNPPfhagkatelavaeeliaeA 125
                 + ++vlDl+ G+G l+a++ +   e+  v+l d++   l++ +e l++ ++   v++v+ ++ +  ++++ fd+i     +++ +++e+a    +    
  EHT98675.1  64 RGQRVLDLAGGTGDLTAKFSRLVGETGqVVLADINSSMLKMGREKLRNLGIVgnVSYVQANAEAlPFPDNYFDCITISFGLRNVTEKEKA-LASM---- 157
                 5789*****************9998867**********************9966666666665524568999***999888888883333.3334.... PP

                 HHHEEEEEEEEEE CS
         MTS 126 keaLkegGeLliV 138
                  ++Lk+gG+Ll+ 
  EHT98675.1 158 FRVLKPGGRLLVL 170
                 4789999999876 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0021      75     126 ..      88     139 ..      55     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEE CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdviv 126
                 ++ +++ +D+++++++ +re++++ g+ + ++++qa+a +L+ +++ +d i 
  EHT98675.1  88 ETGQVVLADINSSMLKMGREKLRNLGIVGNVSYVQANAEALPFPDNYFDCIT 139
                 55678889**********************************9888999885 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.4e-06     0.011       8      67 ..      64     124 ..      61     140 .. 0.85
   2 ?   -0.4   0.0       0.6   7.7e+02     117     135 ..     150     168 ..     144     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.4e-06
                      TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES- CS
  Methyltr_RsmB-F   8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaD 67 
                       ++++lDl+ + G  T+  + l+ ++g+vv  d+n++ lk   e l+ Lg+  n+  ++a 
       EHT98675.1  64 RGQRVLDLAGGTGDLTAKFSRLVGETGQVVLADINSSMLKMGREKLRNLGIVgNVSYVQAN 124
                      5799*********************************************987455555554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.6
                      HHHHHHHHCCCEEEEEEEE CS
  Methyltr_RsmB-F 117 qkellsaaidllkkgGvlv 135
                      +++ l +++ +lk+gG l+
       EHT98675.1 150 KEKALASMFRVLKPGGRLL 168
                      4556677777888888776 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.029      24      95 ..      58     135 ..      50     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
                 HHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHHC CS
      RrnaAD  24 dklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeevt 95 
                 d + ++  + vl+++ G+G lT+++   +    qvv+  + ++++k+ ++kl+     +++  v++++    +p ++ 
  EHT98675.1  58 DSSGMRRGQRVLDLAGGTGDLTAKFSRLVgetGQVVLADINSSMLKMGREKLRnlgIVGNVSYVQANAEALPFPDNYF 135
                 5566778899***************99999989******************997766778888888877777776665 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.5e-05     0.032      12     102 ..      63     161 ..      55     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
        MetW  12 kpgsrvldlGcGdGell....ellkeekqvdgrGleldeegvaecvakGl....sviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrig 102
                 + g rvldl  G G+l     +l+ e+ qv    ++ +   + +   + l    +v   +++ +   f+d+ fd + +s  l+++ + ++ l  ++r+ 
  EHT98675.1  63 RRGQRVLDLAGGTGDLTakfsRLVGETGQVVLADINSSMLKMGREKLRNLgivgNVSYVQANAEALPFPDNYFDCITISFGLRNVTEKEKALASMFRVL 161
                 6789**********99732225677888888888888876665555554411334555677777889******************************95 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.4e-05      0.12      38     106 ..      62     130 ..      55     190 .. 0.81
   2 ?    0.6   0.0      0.28   3.6e+02      57      76 ..     156     175 ..     147     211 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.4e-05
       GCD14  38 lkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvckeGf 106
                 ++ G +v++   G+g l+ +++r v+ tG++   +   +  +  re++r+ +++++v   + ++    f
  EHT98675.1  62 MRRGQRVLDLAGGTGDLTAKFSRLVGETGQVVLADINSSMLKMGREKLRNLGIVGNVSYVQANAEALPF 130
                 689**************************************************9999877766666666 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
       GCD14  57 aiartvaPtGhlftfefheq 76 
                 ++ r ++P G+l  +ef + 
  EHT98675.1 156 SMFRVLKPGGRLLVLEFSKP 175
                 6889************9864 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.16   2.1e+02      12      18 ..      69      75 ..      69      75 .. 0.95
   2 ?    7.7   0.0     0.002       2.5      16      28 .]     164     176 ..     164     176 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
                TTTS-EE CS
      Sec_GG 12 lDFtGGt 18
                lD++GGt
  EHT98675.1 69 LDLAGGT 75
                8*****9 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.002
                 -EEEEEEEE-TTS CS
      Sec_GG  16 GGthielqfdqpv 28 
                 GG++++l+f++pv
  EHT98675.1 164 GGRLLVLEFSKPV 176
                 9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1991.51
//
Query:       EHT98676.1  [L=201]
Description: SCP2 family sterol carrier protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-20   72.4   0.2      5e-20   71.9   0.2    1.2  1  SCP2          SCP-2 sterol transfer family
     0.0063   16.8   0.0       0.01   16.1   0.0    1.2  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.2   5.5e-24     5e-20       1     101 []      15     113 ..      15     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 5.5e-24
                 HHHHHHHHHHHHHHHHHCCH-E.EEEEEECTC.TEEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHH CS
        SCP2   1 lnqllerlkdpekkealkklag.vlrfdltdlkgsltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqklea 98 
                 ln++l r  d   k+a ++lag vl + l++l ++l+l+++e+qldv+++++ + d+t++  l+ l++l +++ + ++++ +g+L++eGD++++q+++a
  EHT98676.1  15 LNRILYR--DRGLKSARQRLAGkVLMLRLSELSWPLVLVFSEQQLDVLSDWQDSSDCTVITQLKSLPKLRDRQ-QLTTLIRSGELQVEGDLQVVQQFSA 110
                 7999999..99**************************************************************.************************* PP

                 HHH CS
        SCP2  99 llk 101
                 l++
  EHT98676.1 111 LMD 113
                 *96 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-06      0.01      62     117 ..      62     115 ..      41     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                   T---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHHHCTB--- CS
  Alkyl_sulf_C  62 aaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakllslldef 117
                   ++q d+ d tv ++ + L +l    ++l++++ +g+l++eGd ++++++ +l+d +
    EHT98676.1  62 DWQ-DSSDCTVITQLKSLPKLR-DRQQLTTLIRSGELQVEGDLQVVQQFSALMDLA 115
                   344.899**************8.5779999***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1704.99
//
Query:       EHT98677.1  [L=545]
Description: 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-35  120.5   0.0    7.9e-35  119.6   0.0    1.5  1  ABC1         ABC1 family
  ------ inclusion threshold ------
       0.11   12.4   0.0        1.2    9.0   0.0    2.3  2  APH          Phosphotransferase enzyme family
       0.14   12.0   0.1       0.33   10.8   0.1    1.6  1  Protoglobin  Protoglobin


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   1.3e-38   7.9e-35       3     119 .]     113     231 ..     111     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1.3e-38
        ABC1   3 lgkkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelr.ldleelvdefskslleEldferEAkn 99 
                 +g+++e++F++fd +P+A+ASiaqVh+A+lk +g++V++Kv rp++   ik+D++l++++a+++ ++l++ r l+  e+v++++k+l+ El+++rEA+n
  EHT98677.1 113 MGAPIESWFDDFDITPLASASIAQVHTATLKsNGKKVVIKVIRPDILPVIKADMKLIYRIARWVPRLLPDGRrLRPVEVVRDYEKTLIDELNLLREAAN 211
                 799****************************88*************************************999************************** PP

        ABC1 100 aekfrenfaklkevkvPkvy 119
                 a ++r+nf++  +++vP+vy
  EHT98677.1 212 AIQLRRNFENSRMLYVPEVY 231
                 *******************8 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.077   4.6e+02      32      84 ..     204     252 ..     176     273 .. 0.63
   2 ?    9.0   0.0    0.0002       1.2     165     190 ..     280     308 ..     266     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.077
                 S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  32 raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr 84 
                  + +e+++  +l r+++++   +vPev+      +     + ++e++ g ++++
  EHT98677.1 204 NLLREAANAIQLRRNFENSRMlYVPEVYS-----DYCSETMMVMERIYGIPISD 252
                 33444444555556666555589*****9.....44444567777777776666 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0002
                 -EEEE-SS-SGGGEEEC.....TTEEEEE CS
         APH 165 ptvllHgDlhpgNllvd...pddgrvtGv 190
                 + ++ H D hpgN+ v    p+d++ +G+
  EHT98677.1 280 RDSFFHADMHPGNIFVSyehPEDPQYIGI 308
                 56899************999888888664 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   5.6e-05      0.33      20      71 ..     447     501 ..     444     503 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
                  HHHHHHHHHHHHCHHHHHHHHHHHHCTSHHHHHHHCH...HCHHHHHHHHHHHHH CS
  Protoglobin  20 aaLralapliealipavvdafYekllsfpetarifet...ssqierlkdflksyl 71 
                  +a+++ ap+ ++ +p++ + fY+ ++++++++ +++    + +++r +++++++l
   EHT98677.1 447 RAVKEKAPYWAEKLPELPELFYDSMQQHKQLRLSVDKlvnDLSVQRTRQHQARFL 501
                  688999*************************999998888899999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4241.86
//
Query:       EHT98678.1  [L=84]
Description: component of Sec-independent translocase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-16   59.2   0.0      3e-16   58.5   0.0    1.3  1  MttA_Hcf106  mttA/Hcf106 family


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.7e-20     3e-16       1      52 [.       4      55 ..       4      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.7e-20
                 S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH---XXXX CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleeenekeaa 52
                 +++++lliI+v+++llFG +kL  ++  LG+++r Fkka++++++ ++++++
   EHT98678.1  4 ISIWQLLIIAVIVVLLFGTNKLRNLGSDLGSSIRGFKKAMSDEDDKKDQPKE 55
                 79*******************************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 646.43
//
Query:       EHT98679.1  [L=211]
Description: component of Sec-independent translocase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00058   19.1   1.6      0.001   18.4   1.4    1.5  1  MttA_Hcf106     mttA/Hcf106 family
  ------ inclusion threshold ------
      0.028   13.1   2.1      0.035   12.8   2.1    1.1  1  DUF4455         Domain of unknown function (DUF4455)
      0.097   12.3   1.5       0.13   12.0   1.5    1.1  1  TEX13           Testis-expressed sequence 13 protein family


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.4   1.7e-07     0.001       1      27 [.       4      30 ..       4      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-07
                 S-HHHHHHHHHHHHHHS-TTTHHHHHH CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvar 27
                 +g+ ell+++v+ l++ Gp++LP + +
   EHT98679.1  4 IGFGELLLVFVIGLIVLGPQRLPHAVK 30
                 799********************8755 PP

>> DUF4455  Domain of unknown function (DUF4455)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.1   5.9e-06     0.035      78     137 ..      47     106 ..      36     111 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-06
     DUF4455  78 eeslkrkswIkeldetLeklEkeRaeklkevlkkyveiLekiayllppdverlidkeame 137
                 ++ l ++ + +el+ +L+k+E+     l++ lk+ +e+L k+a  ++  v++ id e++e
  EHT98679.1  47 QSELAQELKLQELQDSLKKVEEASHGTLSPELKESMEALRKTADSMKRSVQQSIDIEREE 106
                 4456789999*********************************************99976 PP

>> TEX13  Testis-expressed sequence 13 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   2.1e-05      0.13      49     136 ..      19     104 ..      17     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
       TEX13  49 iledsevpseakeacawsaLaLgvrvaarqrelqarrvqkLqdqveehksaaq.aLaselkrlreqqemerkeaasqlqlaqaalaevq 136
                 +l  +++p+++k    w     ++ +  + +  q+ ++q Lqd +++ + a++ +L  elk+ +e     rk a s  +++q+++   +
  EHT98679.1  19 VLGPQRLPHAVKTVVGWIRAVRSLAANVQSELAQELKLQELQDSLKKVEEASHgTLSPELKESME---ALRKTADSMKRSVQQSIDIER 104
                 566678999999999999887787777777788999**********9998887368888888777...566666666666665544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1751  (0.097663); expected 358.6 (0.02)
Passed bias filter:                      961  (0.0536003); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 1654.44
//
Query:       EHT98680.1  [L=252]
Description: component of Sec-independent translocase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-66  223.6  23.0    2.8e-66  223.3  23.0    1.1  1  TatC          Sec-independent protein translocase protein (Ta
  ------ inclusion threshold ------
          2    8.2   0.0          2    8.2   0.0    3.4  4  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
        9.8    6.3  11.0    1.6e+02    2.3   7.5    3.0  3  DHHC          DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3  23.0   4.7e-70   2.8e-66       2     207 .]      12     221 ..      11     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 4.7e-70
                 HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHC..CTTS-EE--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCTTTTS---STTTHHH CS
        TatC   2 hLeeLrkrlirallavaiafiitfvfaeeliafllepleea.eeevelivlspleafllklkvslvaglvlasPvilyqlwafvapgLykherrlvlvf 99 
                 hL eLrkrl+ +++av+++f+++++fa+++++ ++ pl ++ ++++++i+++++ +f++ +k++++++++la+Pvilyq+waf+ap+Ly+her+lv+++
  EHT98680.1  12 HLIELRKRLLNCIIAVLVIFLALIYFANDIYHAVASPLINQmPAGASMIATDVASPFFTPIKLTMIVSVFLAVPVILYQVWAFIAPALYRHERKLVMPL 110
                 ***********************99****************9999****************************************************** PP

                 HHHHHHHHHHHHHHHHHTHHHHHHHHHT...TTTSSTTEEHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTSS-HHHHHTTHHHHHHHHHHHHHHH-S CS
        TatC 100 liaslllfllGaafayfvvlplvlkfll...seevepllslseylsfvlllllafgiaFelPlvlvllarlglvsaetlrkkrryaivvilvvaavltP 195
                 l++s+llf++G+afayf+v+pl++ f++    ++v+ + ++++yl+fv++l++afg+aFe+P+ +vll  +g+ s+e l+kkr y++v+++vv+++ltP
  EHT98680.1 111 LFSSTLLFYVGVAFAYFIVFPLAFGFFAktaPQGVTIATDITNYLDFVMTLFMAFGVAFEVPVAIVLLCWTGITSPEDLKKKRPYILVGAFVVGMLLTP 209
                 ****************************8887778889************************************************************* PP

                 .SHHHHHHHHHH CS
        TatC 196 pdvisqlllavP 207
                 pdv+sq+lla+P
  EHT98680.1 210 PDVFSQTLLAIP 221
                 ***********9 PP

>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.6       0.1     6e+02      18      38 ..      18      38 ..      15      73 .. 0.68
   2 ?   -0.5   0.3      0.16   9.3e+02     118     135 ..      80      96 ..      60     106 .. 0.64
   3 ?   -1.4   0.1       0.3   1.8e+03     104     140 ..     155     189 ..     143     194 .. 0.65
   4 ?    8.2   0.0   0.00033         2     104     150 ..     201     248 ..     195     252 .] 0.64

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.1
  TMEM208_SND2 18 knlrlislavnalylllrlll 38
                  k+l ++++av +++l+l+++ 
    EHT98680.1 18 KRLLNCIIAVLVIFLALIYFA 38
                  567888888888888888877 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.16
  TMEM208_SND2 118 lylviPayalYklwglil 135
                   ++l++P+ +lY++w +i 
    EHT98680.1  80 VFLAVPV-ILYQVWAFIA 96 
                   3455554.4566666665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.3
  TMEM208_SND2 104 vqvlsilfgnkfWllylviPayalYklwglilgpaff 140
                   ++++++lf   ++ +   +P+ ++ + w+ i +p  +
    EHT98680.1 155 LDFVMTLFM--AFGVAFEVPVAIVLLCWTGITSPEDL 189
                   344444444..66677778888888888888777655 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00033
  TMEM208_SND2 104 vqvlsilfg.nkfWllylviPayalYklwglilgpaffkgagsaeeaa 150
                   + v+++l+  + f  ++l+iP+y l+ + ++++  ++ kg+++++e++
    EHT98680.1 201 FVVGMLLTPpDVFSQTLLAIPMYCLFEVGVFFSRYYVGKGRQTEDEEQ 248
                   44667777757777789*************999333335544432222 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   2.4     0.041   2.5e+02      58     105 ..      22      78 ..      18      99 .. 0.57
   2 ?    2.3   7.5     0.027   1.6e+02      54     133 ..     116     191 ..      68     192 .. 0.53
   3 ?   -1.3   0.0      0.36   2.2e+03      51      82 ..     213     244 ..     209     251 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.041
        DHHC  58 lllllilalvlllialvklveeekkseflavtllkk.............llsilllvlsll 105
                  +++++l+++l+li++ + + +  +s   + +   +                i l+++  +
  EHT98680.1  22 NCIIAVLVIFLALIYFANDIYHAVASPLINQMPAGAsmiatdvaspfftP--IKLTMI--V 78 
                 56777777888888888888777777777666655567767766665431..211111..1 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.027
        DHHC  54 fllylllllilalv..lllialvklveeekkseflavtllkkllsilllvlsllfllllgllllfhly.lilrnlTtieamkk 133
                 +l+y+ +++++++v  l++ ++ k+ ++  +           ++++l +v+ l++++ +++ + + ++ l+++++T+ e +kk
  EHT98680.1 116 LLFYVGVAFAYFIVfpLAFGFFAKTAPQGVTIATD-------ITNYLDFVMTLFMAFGVAFEVPVAIVlLCWTGITSPEDLKK 191
                 22222222222222113333333333333333222.......44455555555555555544444544145588888887776 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.36
        DHHC  51 Fllfllylllllilalvlllialvklveeekk 82 
                 F + ll++ +++++ + +++  +++    +++
  EHT98680.1 213 FSQTLLAIPMYCLFEVGVFFSRYYVGKGRQTE 244
                 55666666666666666665555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1927.33
//
Query:       EHT98681.1  [L=260]
Description: TatD family deoxyribonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-68  229.1   0.0    6.5e-68  228.9   0.0    1.0  1  TatD_DNase    TatD related DNase
    0.00054   19.8   1.6     0.0019   18.0   1.6    2.0  1  Amidohydro_2  Amidohydrolase
  ------ inclusion threshold ------
      0.094   12.5   0.2       0.31   10.9   0.0    1.9  3  DRTGG         DRTGG domain


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.9   0.0   1.1e-71   6.5e-68       1     254 [.       2     257 ..       2     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 228.9 bits;  conditional E-value: 1.1e-71
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEEET- CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGLDyy 99 
                 +D  ++l+s++f++dr++++ ra++agv+ ++ +gt+  +s+++ +la+ +p++++ ++G+HP+ + e+s+++ ++l++l  +++ +vvaiGe+GLD+ 
  EHT98681.1   2 FDIGVNLTSTQFASDRKKVITRARDAGVTGMLITGTNALESQQAQRLAEAHPGYCWSTAGVHPHHASEWSQEVANTLRRL--AEKAQVVAIGECGLDF- 97 
                 79******************************************************************************..****************. PP

                 CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCS.EEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTT.THHHHHHHHHS- CS
  TatD_DNase 100 sreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeaka.kvvlHsfsgsaeeakkflklgyyislsglltfkn.akelrelvkavp 196
                 +r+ s +++qe +F++ql+lA+el+ p+++H+r+a+e + ++l+   ++ + + v+H+f+g+ ee++++l++g++++++g+++ ++ +  lre++  +p
  EHT98681.1  98 NRNLSAHQQQEYAFDAQLALAAELNMPVFLHCREAHERFAAVLEPWLPK-LpAAVIHCFTGTREELAACLEMGLSVGITGWVCDERrGIALREMLPLIP 195
                 9********************************************9754.44********************************987888********* PP

                 GGGEEE---TTSSEE...CCCTT.SE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  TatD_DNase 197 ldrlLiETDaPyltp...kpyrg.krnepanvayvveklaelkaltleelaeitaeNakrlf 254
                  +rlL+ETDaPyl p    p  + +rnep++++++++++a+ +++++e la+++ +Na++lf
  EHT98681.1 196 AERLLLETDAPYLLPrdmRPRPTsRRNEPCFLPHILQQVANWRGEEPEALAAQVDHNARTLF 257
                 ***************777555567*************************************9 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.6   3.2e-07    0.0019      94     290 ..      70     258 ..      43     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.2e-07
                   SHCHHHHHHHHHHHHTTECE...EEEESSTTTCCTTTCGGH.HHHHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEE CS
  Amidohydro_2  94 dpedaaaeleraveelgfkG...vrlnphvggddllgdrld.rpifealeelglpvdihtGpspewlfggpqettraiqplllsgvarkfPnlkivl 186
                   + +++a  l+r +e++++++   + l+++ + + + ++++  +  +++++el+ pv++h               +r+ +   ++ +   +P+l+  +
    EHT98681.1  70 WSQEVANTLRRLAEKAQVVAigeCGLDFNRNLSAHQQQEYAfDAQLALAAELNMPVFLH---------------CREAHERFAAVLEPWLPKLPAAV 151
                   6678888999999999999955545888888888888888888****************...............55555555555556789999*** PP

                   SGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHHSSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH............ CS
  Amidohydro_2 187 aHgGgpserlraalellarrpnvyvklsglytellyfdspladppalarlieavgpdrilfGsDyPhptleaepealalldlval............ 271
                    H+  +    r++l+++ +   + v + g+          + +  al++ + +++++r+l  +D P+  +++ + +   +++               
    EHT98681.1 152 IHCFTG---TREELAACLEMG-LSVGITGW-------VCDERRGIALREMLPLIPAERLLLETDAPYLLPRDMRPRPTSRRNEPCflphilqqvanw 237
                   ***999...666666666666.66666664.......444555566************************999888876665333666777777777 PP

                   ..SSHHHHHHHHTHHHHHHCT CS
  Amidohydro_2 272 ..lsdeerekilggNAarlyg 290
                       +e++++   +NA+ l+g
    EHT98681.1 238 rgEEPEALAAQVDHNARTLFG 258
                   777777777777777777777 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.1e-05      0.31      48      84 ..      15      51 ..      13      56 .. 0.86
   2 ?   -2.9   0.0      0.99   5.9e+03      31      86 ..      74      87 ..      71      91 .. 0.46
   3 ?   -3.9   0.0       1.9   1.2e+04      78      89 ..     115     126 ..     113     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.1e-05
                TT-HHHHHHHTT-TEEEEEEETT----HHHHHHHHHH CS
       DRTGG 48 GDRediqlaaleagiaalilTgglepseevlklaeea 84
                 DR+ +++ a +ag+ ++++Tg  +++++ +++++ea
  EHT98681.1 15 SDRKKVITRARDAGVTGMLITGTNALESQQAQRLAEA 51
                6*********************999988777766655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.99
                HHHHHHHHHTSEEEEEETT-HHHHHHHTT-TEEEEEEETT----HHHHHHHHHHT- CS
       DRTGG 31 venmlerlkegdlvivpGDRediqlaaleagiaalilTgglepseevlklaeeagl 86
                v n+l+r                                          lae+a++
  EHT98681.1 74 VANTLRR------------------------------------------LAEKAQV 87
                4444444..........................................4444442 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.9
                 HHHHHHHT--EE CS
       DRTGG  78 lklaeeaglpvl 89 
                 l+la+e+++pv+
  EHT98681.1 115 LALAAELNMPVF 126
                 578999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2035.74
//
Query:       EHT98682.1  [L=162]
Description: DNA-binding transcriptional antiterminator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-19   69.5   0.0    3.5e-19   69.1   0.0    1.2  1  NusG      Transcription termination factor nusG
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.089   12.8   0.0    1.6  1  KOW       KOW motif


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0     4e-23   3.5e-19       2      94 ..       3      96 ..       2      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 4e-23
                EEEEEEE-TTTHHHHHHHHHHHCT-EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---CHHHHHHHCSTTEEEE-EETTSSCC-EB-HHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        NusG  2 kWYvlqvepgkekkvkenLleeeglevivPaeekveirqgkkk....klfpgyifikadmndkllmairktpgVtgfvrvggeskpvplseeevqni 94
                +WY+l+++ g+  ++ke+L e++ ++++ P++  ++i +gk++    +lfp+y+fi++d +  ++++i +t+gV++fvr+g    p++++   ++++
  EHT98682.1  3 SWYLLYCKRGQLLRAKEHL-ERQAVNCLSPMIALEKIVRGKRTtvsePLFPNYLFIEFDPEAIHTTTISSTRGVSHFVRFGA--TPATVPAVVIDAL 96
                7******************.***********99999999999999***********************************99..8999998877765 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.9e-06     0.089       2      17 ..     113     128 ..     112     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.9e-06
                 TSEEEESSSTTTTCEE CS
         KOW   2 GdhVkVvsGphkGktG 17 
                 Gd+V+++ G+++G  +
  EHT98682.1 113 GDEVIITEGTFEGLRA 128
                 9************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1187.66
//
Query:       EHT98683.1  [L=494]
Description: 3-octaprenyl-4-hydroxybenzoate decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-171  568.8   0.0     7e-171  568.6   0.0    1.0  1  UbiD      3-octaprenyl-4-hydroxybenzoate carboxy-lyase


Domain annotation for each model (and alignments):
>> UbiD  3-octaprenyl-4-hydroxybenzoate carboxy-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.6   0.0  3.9e-175    7e-171       1     406 []      10     431 ..      10     431 .. 0.98

  Alignments for each domain:
  == domain 1  score: 568.6 bits;  conditional E-value: 3.9e-175
                 HHHCCCTTSEEEEESEB-TBTHHHHHHHHHHHHT--EEEEEEBTTB.TT-EEEE-TTS-HCHHHHHHTS...-GHHHHHHHHHHHHHS..-........ CS
        UbiD   1 lealekagelvrikeevdpelEiaeiarrvleeggpallFenvkgkgskfpvltnlfgtrervalalgl...ssleeileklaellepkpp........ 88 
                 ++ le++gel+ri++ +dpelE++eia+r+l++ggpallFen+kg+  ++pvl+nlfgt++rva+++g    s+l+e++e la l+ep+pp        
  EHT98683.1  10 IALLEQRGELKRISHVIDPELEMTEIADRTLRAGGPALLFENPKGY--DMPVLCNLFGTPKRVAMGMGQeevSALREVGELLAFLKEPEPPrgfrdlfs 106
                 678****************************************866..8********************999999*************9999******* PP

                 ..........---EE--GCG-GGGSEEECCCCC--HHHS---BSSTTSSS-EEECEEEEEE-TTTT-EEEEEEEEEEEETTEEEE--TTTHCHHHHHHH CS
        UbiD  89 ..........ippkvvesekapcqeevvlegddvdLskLPvltlwpgDgGpyitlglvitrdpetgkrnlgiyRmqvldknklglhwqihkggaehlrk 177
                           +p k+++  +apcqe+v  +gd+vdL+++Pv+++wpgD++p+it+gl++tr p+++++nlgiyR+qv++kn+l+++w++h+gga ++ +
  EHT98683.1 107 kmpqfkqvlnMPTKRLR--NAPCQEVV-FSGDEVDLTRIPVMKCWPGDAAPLITWGLTVTRGPHKERQNLGIYRQQVIGKNRLIMRWLSHRGGALDYLE 202
                 ********999999995..6****766.67********************************************************************* PP

                 HHHCC.T--EEEEEEES--HHHHHHCTS--TTT-TCHHHHHHHHTS--EEEE-SSSSSEEETT-SEEEEEEEECCEEEECTTTC-TTSCEEC--CCEEE CS
        UbiD 178 akkkg.geplpvavaiGvdPaltlaAvaplPeglsElefaGalrgepvelvkcetvdlevpadAEivleGeidpgetapEGPfgdhtGyysevrdefpv 275
                 ++k++ ge++pv+va+G+dPa++l Av+p+P++lsE++faG+lrg ++e+vkc ++dlevpa+AEivleG+i+pg++apEGP+gdhtGyy+ev d+fpv
  EHT98683.1 203 WCKAHpGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGNKTEVVKCLSNDLEVPASAEIVLEGYIEPGDMAPEGPYGDHTGYYNEV-DSFPV 300
                 ******99**********************************************************************************999.67*** PP

                 EEEEEEEE-TT-EEEE-SSSCCSHHHHCHHHHHHHHHHHHHHCCSTTEEEEEE-GGGTTTCEEEEECHHHTCCHHHHHHHHHHCCTTGGC-SEEEEEEE CS
        UbiD 276 fkVtaithRkdpiypttvvgkppeedallgkalealflpllkkqvpevkdvhlpeeggfhllavvsikkrypghakkvmealwalkqqlsltKlvivvD 374
                 f+Vt+it R+++iy++t++g+pp+e+a+lg+al+++++p+l kq+pe++d++lp+eg++++lavv ikk+y+ghak+vm+++w++ +q+++tK+viv+D
  EHT98683.1 301 FTVTHITQRHQAIYHSTYTGRPPDEPAVLGVALNEVLVPILIKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMFGVWSFLRQFMYTKFVIVCD 399
                 *****************************************999******************************************************* PP

                 TTS-TTSHHHHHHHHHHC--CCCCEEEECCCE CS
        UbiD 375 edvdvrdlkevlwaiatrvdpdrDlviiegtr 406
                 +dv+ rd+++v+wai+tr+dp+rD+v++e+t+
  EHT98683.1 400 DDVNARDWNDVIWAITTRMDPARDTVLVENTP 431
                 *****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3764.60
//
Query:       EHT98684.1  [L=233]
Description: flavin reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-22   79.0   0.0    5.8e-22   78.4   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    0.00044   20.5   0.0    0.00072   19.9   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.24   11.5   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   9.7e-26   5.8e-22       1     108 [.     108     211 ..     108     212 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 9.7e-26
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    +iagGtG+++vrs+l ++l+e ++++ +++++G r+ ++l+  +ele+la k+p+ lkv++vv+++eagw g+ g+v +a++++++   ++e+ +y
     EHT98684.1 108 LIAGGTGFSYVRSILLTALAE-QPNRDIAVYWGGRELKHLYDLDELEALAIKHPN-LKVIPVVEQPEAGWPGRSGTVLTAVMQDFAT--LSEHEIY 199
                    7*******************9.999******************************.9******************************..9****** PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    ++G+ +M+k +r
     EHT98684.1 200 IAGRFEMAKIAR 211
                    ********9987 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-07   0.00072       2      95 ..       6      94 ..       5      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
                   EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE- CS
  FAD_binding_6  2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlG 95
                   +k+t++e +++ + ++r+    +++++ +++Gq++++ ++   e+  R+++++s++ e+  +el++   +     +a  d+++   ++ ++ P+G
     EHT98684.1  6 CKVTSVEAITDTVYRVRLI---PDADFSFRAGQYLMVVMD---ERDKRPFSLASTPMETEIIELHIGASELNLYAMAVmDRIQQEGQIVVDIPHG 94
                   7899999999887666664...567789*********999...5556*******************88877777766667777777777777777 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.1e-05      0.24       4      53 ..     106     150 ..     104     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.1e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfk 53 
                    ++l+agG+G++++ sil   l+++      ++ i  +w  re ++l  ++
     EHT98684.1 106 LILIAGGTGFSYVRSILLTALAEQP-----NRDIAVYWGGRELKHLYDLD 150
                    79****************9999997.....89999999999998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1748.92
//
Query:       EHT98685.1  [L=387]
Description: 3-ketoacyl-CoA thiolase (thiolase I) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-83  277.6   0.4    1.3e-82  277.1   0.4    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    9.5e-52  173.8   0.1    1.8e-51  173.0   0.1    1.5  1  Thiolase_C     Thiolase, C-terminal domain
    0.00014   21.5   0.3     0.0004   20.0   0.3    1.7  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.064   13.1   0.1          2    8.3   0.0    2.4  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.1   0.4   2.9e-86   1.3e-82       1     260 []       4     254 ..       4     254 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.1 bits;  conditional E-value: 2.9e-86
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaa 96 
                 vvi++a+rtp+g+ +gg+++ ++ae+L+a++++all++++ v+++++d++i+G+v q+ ++g niar+aal a+ip+ vpa+tvn++c+S+++a+++aa
  EHT98685.1   4 VVIIDAVRTPMGRsKGGAFRHVRAEDLSAHVMRALLNRNPgVNAATLDDIIWGCVQQTlEQGFNIARNAALLAEIPHRVPATTVNRLCGSSMQALHDAA 102
                 8************999***********************99*****************9**************************************** PP

                 HHHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTT CS
  Thiolase_N  97 qsiaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkd 195
                 ++i++g+a+ +++gGvE+m+++p+++ +d++ gl    +ka +++              Gltae+la+++ isRe+qd+fA++shq+a++a++ g F++
  EHT98685.1 103 RAIMVGDAQTCLIGGVEHMGHVPMNHGVDFHPGLGRTVAKAAGMM--------------GLTAEMLARMHHISREQQDAFALRSHQRAWQATQRGDFAN 187
                 ************************************999999988..............**************************************** PP

                 TBE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 196 eivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmses 260
                 eiv ++ ++ +g  k  d de ir+++++e La+l+paF+   GtvtAg +s +sDGaa +l+mses
  EHT98685.1 188 EIVALHGHDADGVlKRYDVDEVIREDTSLEGLAALRPAFDPVnGTVTAGSSSALSDGAAGMLIMSES 254
                 *****************************************99**********************96 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0   0.1   3.9e-55   1.8e-51       1     123 []     261     386 ..     261     386 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.0 bits;  conditional E-value: 3.9e-55
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G...GGBSTT--HHHH-B-TTTHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl...ekvNvnGGaialGHPlGasGaRivvtllse 96 
                 lkp a+i+s+a+vg+dp+i+g+gP++a+k +lk+agl+v+did+fE+nEAFaaq+L ++++l+l     +kvN+nGGaialGHPlG+sGaRi +tll+ 
  EHT98685.1 261 LKPRARIKSMAVVGCDPSIMGYGPVPASKLALKRAGLSVNDIDVFELNEAFAAQVLPCINDLGLSDrldDKVNLNGGAIALGHPLGCSGARISTTLLNI 359
                 5899***********************************************************9987889***************************** PP

                 HHHCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  97 lkkeggklgvaalCigggqgvalviek 123
                 ++++++++g+a++Cig gqg+a+vie+
  EHT98685.1 360 MERRDAQFGLASMCIGLGQGIATVIER 386
                 *************************96 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   8.9e-08    0.0004     167     207 ..      83     123 ..      78     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 8.9e-08
                    SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 167 psvtvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207
                    p+ tv   C Ss  a+h a ++++ g+a+++l GGve + +
     EHT98685.1  83 PATTVNRLCGSSMQALHDAARAIMVGDAQTCLIGGVEHMGH 123
                    78899999*****************************8876 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00044         2       3      37 ..      87     121 ..      86     137 .. 0.91
   2 ?    1.9   0.0     0.044     2e+02      51      64 ..     240     253 ..     228     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00044
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetl 37 
                  +n  C + ++al+ A+++i  g a++ L+ g e +
   EHT98685.1  87 VNRLCGSSMQALHDAARAIMVGDAQTCLIGGVEHM 121
                  5778*************************999887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.044
                  TB-EEEEEEEEEEE CS
  ACP_syn_III  51 lfGDGAgAvvleas 64 
                   ++DGA+++++  +
   EHT98685.1 240 ALSDGAAGMLIMSE 253
                  689******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3073.58
//
Query:       EHT98686.1  [L=727]
Description: fatty acid oxidation complex subunit alpha [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-62  208.6   0.1    3.2e-61  206.3   0.1    2.0  2  3HCDH_N   3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    6.3e-40  137.1   0.0      1e-39  136.4   0.0    1.3  1  ECH_1     Enoyl-CoA hydratase/isomerase
    6.4e-33  113.2   0.3      5e-24   84.7   0.1    3.1  3  3HCDH     3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    7.2e-24   84.9   0.0    1.5e-23   83.9   0.0    1.5  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24   1.1e+03     131     153 ..     241     263 ..     232     278 .. 0.78
   2 !  206.3   0.1   7.2e-65   3.2e-61       2     180 .]     315     493 ..     314     493 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.24
                 GEEEEEE-SSTTT--EEEEEE-T CS
     3HCDH_N 131 rviglHFfnPpplmkLvEvvrge 153
                 + +g H+  P++ +k++E  ++ 
  EHT98686.1 241 QTAGKHYPAPVTAVKTIEAAAAL 263
                 67899************976665 PP

  == domain 2  score: 206.3 bits;  conditional E-value: 7.2e-65
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                  av+GaG+mG gi ++ a +g++V++ di+++al+ ++++++k l+k+ e+gk++ ++ ++++a+i++t d++ + +ad+v+EavvEn ++K++v+ae 
  EHT98686.1 315 AAVLGAGIMGGGISYQSAWKGVPVKMKDINPQALTLGMNEASKLLNKQLERGKIDGNKLASVIATIQPTLDYAGFDQADIVVEAVVENPKIKASVLAET 413
                 79************************************************************************************************* PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS- CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkdv 180
                 e+++++dailasnTS+++is+la+al+rpe+++g+HFfnP+p m+LvEv+rgekTse+t+ +vv++a k+gktpvvv+d+
  EHT98686.1 414 ETHMRADAILASNTSTIPISHLAQALQRPENFCGMHFFNPVPRMPLVEVIRGEKTSEATLGKVVAWASKMGKTPVVVNDC 493
                 ******************************************************************************96 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   2.2e-43     1e-39       4     197 ..      15     211 ..      12     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 2.2e-43
                 TTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC..HHHHHHHCCHH.HHHHHHHHSSSEEEEEE-SEE CS
       ECH_1   4 agvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek..akqallkeevl.elwtklytvpkpviaavnGaa 99 
                 +g++++ ++ P  vN l+ ++++ l +a   le+   +r+v L +   aF  Gad++e ++      ++ + + ++  + +++l ++p+p+i+a++G+a
  EHT98686.1  15 DGIVELVFDAPGSVNKLDTQTVASLGDAVTVLEKHAGMRGVLLRSAKPAFIVGADITEFLALFDapTEKLSQWLTFAnSIFNRLEDLPVPTISAIEGYA 113
                 69999******************************************************99866335555667776515799***************** PP

                 ETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHH CS
       ECH_1 100 igGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaa 197
                 +gGG+e +la+D+++a  +a+ gl+e+klG++pg+gg+ +l+r +G   A+ei+  gk + + ealk Glvd+vv++++l + al +++  a+ ++  
  EHT98686.1 114 LGGGCECVLATDLRVATPTARLGLPETKLGIMPGFGGSVRLPRLLGADSAMEIIAAGKDVDGVEALKLGLVDAVVSNDKLRDAALTMLKAAAHDGSWR 211
                 *************************************************************************************9999887766655 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7   7.5e+03      12      30 ..     352     369 ..     348     408 .. 0.70
   2 !   84.7   0.1   1.1e-27     5e-24       1      97 []     495     591 ..     495     591 .. 0.96
   3 !   25.1   0.0   4.6e-09   2.1e-05       3      60 ..     626     687 ..     626     711 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.7
                 HHHHHHHHHTTSS-HHHHH CS
       3HCDH  12 lneavrlveegvaspediD 30 
                 +nea +l++++ ++  +iD
  EHT98686.1 352 MNEASKLLNKQ-LERGKID 369
                 67777777777.7666666 PP

  == domain 2  score: 84.7 bits;  conditional E-value: 1.1e-27
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTH...GGHH-HHHHHHHHTT--BGGGTBSSSB CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelger...ayapsplleklveagrlgrktgkgfyk 96 
                 GF+vnRvl+p++  +  l+ +g a++++iD++m++++G+pmGp  lld+vg+d+a+++ +v+a++++er   +  + + ++ l+ea+r+g+k+g gf++
  EHT98686.1 495 GFFVNRVLFPYFAAFGMLLRDG-ADFRQIDKVMEKQFGWPMGPSWLLDVVGIDTAHHAQSVMADGFPERmkkD--YRDAIDILFEAKRFGQKNGLGFWR 590
                 9*********************.**********************************************9555..559*******************98 PP

                 C CS
       3HCDH  97 y 97 
                 +
  EHT98686.1 591 W 591
                 6 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 4.6e-09
                 THHHHHHHHHHHHHHHHHTTS.S-HHHHHHHHHHHHHHS...SCHHHHHHHHHHHHHHHHHH CS
       3HCDH   3 vvnRvlapllneavrlveegv.aspediDaamrlglGlp...mGpfelldlvgldvakkile 60 
                 ++nR++ p+lne+vr++ee++ asp++ D a+ +glG+p    G+f+ ld++g + + + ++
  EHT98686.1 626 ILNRMMLPMLNEVVRCLEEKIiASPAEADMALVYGLGFPpfrGGAFRYLDTLGNGNVVDQAK 687
                 68****************995489*************9977679******999876666655 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   3.2e-27   1.5e-23       5     188 ..      21     204 ..      17     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.2e-27
                 EE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHHH CS
       ECH_2   5 tLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGgGv 103
                  ++ p ++N L+++ v +l +a++  ek+  ++ v+l++a+  af  G D+ ++    ++ +++ ++  +   ++ ++++++p p+++ ++G+++GgG+
  EHT98686.1  21 VFDAPGSVNKLDTQTVASLGDAVTVLEKHAGMRGVLLRSAK-PAFIVGADITEFLALFDAPTEKLSQWLTFANSIFNRLEDLPVPTISAIEGYALGGGC 118
                 578999*********************************77.8*****************87776899999999************************* PP

                 HHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT. CS
       ECH_2 104 GlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaele 188
                    + + +rv+t ++++  PEt++G++P  Ggs  L+rl g   ++ +   G+ ++g +al++gl + +v+++kl + + ++ ++ 
  EHT98686.1 119 ECVLATDLRVATPTARLGLPETKLGIMPGFGGSVRLPRLLGaDSAMEIIAAGKDVDGVEALKLGLVDAVVSNDKLRDAALTMLKAA 204
                 **************************************977589999999************************977654444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4956.17
//
Query:       EHT98687.1  [L=443]
Description: proline dipeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-43  148.0   0.2      4e-43  147.6   0.2    1.2  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.23   11.5   0.0    1.4  1  DUF3793        Protein of unknown function (DUF3793)


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.2   4.4e-47     4e-43       2     208 ..     169     429 ..     168     430 .. 0.86

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 4.4e-47
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBC.SSSB--TTEEEEEEEEEEETTEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytp.ndrvlkegdlvlidagaeydgyasDitrTv 96 
                    ++r+a++ia a ++a++ea+  g +e ++ ++   +    h  +++ +  i+a++e+aavlhyt+ ++++  ++  +lidagaey+gya+D tr +
     EHT98687.1 169 CMRQAQKIAVAGHRAAKEAFAAGLSEFDINQAYLTA--TGHRDTDVPYGNIIALNEHAAVLHYTKlDHQPPAKRYSFLIDAGAEYQGYAADLTRSY 262
                    8*********************************66..8888*********************88689999************************* PP

                    ECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHH........TTB...........CCGBSSCSEEEESSSSSEE......... CS
  Peptidase_M24  97 lvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevles........agl...........akffphglGHgvGlevhde......... 164
                    +       +++++ea+ +   a+i+ +k+Gv++++ +  +++ +++        +g+           + f+phglGH +Gl+vhd+         
     EHT98687.1 263 AAQ-SGSLYAKMVEAMNAEELALIATLKAGVRYTDYHLQMHQRIAKllvkfdlvHGIseealvaedltGPFMPHGLGHPLGLQVHDVagfmqdesg 357
                    984.33468889999999999************************9655544443559999999999********************777777776 PP

                    ........EEEESSSTTCSSB--TTBEEEEEEEEEEETTT........................EEEEEBEEEEEE CS
  Peptidase_M24 165 ........gpsvsresndgrkleeGmvftiEpgiyfapge........................ggvriedtvlvt 208
                                ++  +++r+++ Gmv+tiEpg+y +++                         gg+ried v+++
     EHT98687.1 358 thlaapaqY---PY-LRCTRVIQSGMVLTIEPGFYIIDSLlaplragkfsahfnwqaldalkpyGGIRIEDNVVIH 429
                    666643222...22.459*****************77744555555557777788999*****88*********98 PP

>> DUF3793  Protein of unknown function (DUF3793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05      0.23      96     120 ..     316     356 ..     275     362 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
     DUF3793  96 e................FPHEiGlfLgYPleDVkgFienkg 120
                 +                 PH +G  Lg  ++DV+gF++ + 
  EHT98687.1 316 HgiseealvaedltgpfMPHGLGHPLGLQVHDVAGFMQDES 356
                 233344456666677745*******************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3229.35
//
Query:       EHT98688.1  [L=205]
Description: putative elongation factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-28   97.1   0.0    9.3e-28   96.6   0.0    1.2  1  UPF0029   Uncharacterized protein family UPF0029
    5.4e-13   48.6   0.0    8.5e-13   48.0   0.0    1.3  1  DUF1949   Domain of unknown function (DUF1949)
  ------ inclusion threshold ------
      0.042   13.9   0.0      0.081   13.0   0.0    1.3  1  EFG_C     Elongation factor G C-terminus


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   1.6e-31   9.3e-28       1     103 [.      19     124 ..      19     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1.6e-31
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE....TTEE-TTSST..SHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHH.HH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvekvnedsdddgEpa..AGkkllelLekeklenvlvvvtRwfGGikLGpgrl.ra 96 
                 kkSrFi+ la+++  e ++a+++++k++++ a+h+++A+      ++++ +++ddgEp+  AGk++l  L  +++ ++++vv+R++GGi+LG+g+l +a
  EHT98688.1  19 KKSRFITLLAHTDGVEAARAFVQQVKQDHPTARHHCWAWVAGAPDDSQQLGFSDDGEPSgtAGKPMLAQLMGAGIGEITAVVVRYYGGIMLGTGGLvKA 117
                 8**************************************877777777777************************************************ PP

                 HHHHHHH CS
     UPF0029  97 iseaare 103
                 +   +++
  EHT98688.1 118 YGGGVQQ 124
                 *988877 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.4e-16   8.5e-13       1      55 [.     142     196 ..     142     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.4e-16
     DUF1949   1 ltvdYadlgkverlLeqfgativdteYtddVtltlavpeeeveafkaaLtdltsG 55 
                 l++ Ya+l+ +erl + +++ i++++Y d++ +tla+p +++e fk+ L+d+++G
  EHT98688.1 142 LQCGYAQLSDIERLVQRYDGSITESHYCDRIAMTLALPYGQIEGFKQNLSDFSRG 196
                 79****************************************************9 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.081       5      67 ..     136     196 ..     136     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
                 EEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTT CS
       EFG_C   5 PivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkG 67 
                 P+  +++++    ++++  ++++  G i++  +   +r+ ++  +P  ++ gf+++L  +++G
  EHT98688.1 136 PVRLFTLQCGYAQLSDIERLVQRYDGSITESHYC--DRIAMTLALPYGQIEGFKQNLSDFSRG 196
                 7788999**************************9..*************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1507.33
//
Query:       EHT98689.1  [L=483]
Description: potassium transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-90  303.0  14.1    6.2e-90  302.0  14.1    1.4  1  TrkH      Cation transport protein
  ------ inclusion threshold ------
          4    6.7  11.8      0.074   12.4   0.6    2.7  3  TssN      Type VI secretion system, TssN


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.0  14.1   6.9e-94   6.2e-90       3     491 ..      37     477 ..      35     482 .. 0.94

  Alignments for each domain:
  == domain 1  score: 302.0 bits;  conditional E-value: 6.9e-94
        TrkH   3 qnifkggiitialgavllfldkeskyplalkddfqivkaaeialsvdgtlklll.esaslafldalfeavsgltttglsvivveeslprsgltlraqlq 100
                  ++ +++++++++g++l++ ++++k++l+ +++f iv+ ++++l + g+++ ++ e+++l ++da fe++sgltttg+++ v ++slp+++l +r++lq
  EHT98689.1  37 RAFSQTFMMALVIGSLLWWPNRKKKTELKPREGFLIVVLFWTVLGSVGAMPFIFaEQPHLSVTDAFFESFSGLTTTGATTLVGLDSLPKAILLYRQMLQ 135
                 57899**********************************************9999999***************************************** PP

        TrkH 101 qiGglgvvvlaylslptlgrgsaflylseaqkeelggkelrslselikilvvyyvgleilafvllvvliytakaysevvdstgvsplwwaffhsmSafn 199
                 ++Gg+g++vla+++lp lg g+++ly++e++++++++k  ++++e++k+l+++yv+l+++++++l         + +++      p ++a+ hs+S++ 
  EHT98689.1 136 WLGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALAL---------WFAGM------PAFDAIGHSFSTIA 219
                 *****************************************************************.........99***......************** PP

        TrkH 200 nlGfsltpnSlasfnknivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllelavlnvtdnilfi 298
                  +Gfs++++S+++f++   i  ++++f ++++ ++ +++++++ ++ ++            +l+d+++r+f + +++  v +  + l+           
  EHT98689.1 220 IGGFSTHDASIGYFQS-GTINTIVAVFLLISGCNYGLHFSLLSNRNLRV------------YLRDPEFRMF-IGVQLTLVLICTVVLW----------- 293
                 ****************.99*************************99999............89********.5555555555555555........... PP

        TrkH 299 lldegslvvksipkgsr.vlkalFqsvstrta.GFsvvdlsnlhpaikvllvlmmyigglpgStaggIrrtnvyeefslgkyeieqekepkavskksid 395
                    ++++    ++ g +   +a+Fq+vs+ t+ GF++ +++ ++ +  vll+ +++igg++gSt gg++ ++++ + ++g +e+++  +p+av +++++
  EHT98689.1 294 ---FHNV----YDSGWQtLNQAFFQVVSMATTaGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLCKQGNRELKRLVHPNAVYTIKLG 385
                 ...4443....45554405589*******9999****************************************************************** PP

        TrkH 396 gkhlerqllvdlwslflvlliilileglklsdvqepdfsffdiLfevvSaygtvGLSlGaknaslsaqlttisklvlialmirGrlrglpvlldra 491
                  + l +++l+++w++f+ + ++++++ l++   +    + f ++++v++++++ G++lG   a  +  +++++k +li  m+ Grl+++++l+++ 
  EHT98689.1 386 NRALPERILEAVWGFFSAYALVFLISMLAIIATG---VDDFSAFAAVAATLNNLGPGLG-VVADNFTSMNDVAKWILISTMLFGRLEVFTLLVLFT 477
                 **************************99999999...677778889*************.999999***************************997 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   8.3e-06     0.074      35     113 ..      12      90 ..       5     106 .. 0.93
   2 ?   -2.2   3.5      0.24   2.2e+03      41     145 ..     189     296 ..     177     300 .. 0.56
   3 ?   -1.0   2.1      0.11   9.5e+02      60     100 ..     275     315 ..     237     324 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-06
        TssN  35 iyiLlaglvlalpgllgflknefvpygyillqilylllGilhlylllkkffkelkekk.ilfeilltlivillglvlfvl 113
                 + ++l+++++ +pgl++++  +     +  + +++l++G+l  +  ++k + elk ++ +l+ +l+  + + +g+++f+ 
  EHT98689.1  12 LLVILFSVTMIVPGLVALIYRDGAGRAFSQTFMMALVIGSLLWW-PNRKKKTELKPREgFLIVVLFWTVLGSVGAMPFIF 90 
                 5688999***********************************99.9999999999999999999***********99985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.24
        TssN  41 glvlalpgllgflknefvpygyillqilylllGilhlylllkkffkelkekkilfeilltlivillglvlfvlvfn.....llselqygvwaatsllvf 134
                  ++l++   l++ +  +     i   + ++ +G +    +   +f+  + ++  +  +++li+++   + f+l+ n     +l++ ++ +++  +l+ +
  EHT98689.1 189 YVLLTVACALALWFAGMPAFDAIGHSFSTIAIGGFSTHDASIGYFQSGTINT--IVAVFLLISGCNYGLHFSLLSNrnlrvYLRDPEFRMFIGVQLTLV 285
                 4555555666666666666666666666666666666666666666666655..444455555555555555555422222355555666666666666 PP

        TssN 135 iipllflktyk 145
                 +i +++l++++
  EHT98689.1 286 LICTVVLWFHN 296
                 66666655555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.11
        TssN  60 ygyillqilylllGilhlylllkkffkelkekk.ilfeillt 100
                   +i +q+  +l+ ++ l+ +++++ +  ++ +  +f+++ +
  EHT98689.1 275 RMFIGVQLTLVLICTVVLW-FHNVYDSGWQTLNqAFFQVVSM 315
                 3456666666666555555.6666666555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3609.25
//
Query:       EHT98690.1  [L=178]
Description: protoporphyrin oxidase, flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-51  173.4   0.0    3.7e-51  173.2   0.0    1.1  1  Flavodoxin_5  Flavodoxin domain
    3.1e-07   30.2   0.0    3.7e-07   30.0   0.0    1.3  1  Flavodoxin_3  Flavodoxin domain
    2.4e-05   24.5   0.1    4.5e-05   23.7   0.1    1.7  1  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
       0.15   11.3   0.0       0.21   10.8   0.0    1.2  1  Peptidase_S8  Subtilase family


Domain annotation for each model (and alignments):
>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.0   8.2e-55   3.7e-51       1     143 [.       4     151 ..       4     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 8.2e-55
  Flavodoxin_5   1 lilYsSrdGqTkkiaeriaeelree..gelvdvedvekesedlesydavvigasvyygkllpelakFvekhreaLstkpvalfsvsltarkpek... 92 
                   lil+s+rdGqT+kia+++ae++++e  +++++++d+  ++ d+++yd+v+igas++yg+++p++++Fv+++ +aL+++ + +fsv+ltarkpek   
    EHT98690.1   4 LILFSTRDGQTQKIASAMAEAIKGEqaCDVMNIQDA--NAIDWQQYDRVLIGASIRYGHFQPAVNEFVKQNLAALQQRVSGFFSVNLTARKPEKrtp 98 
                   8**********************9977777777777..899******************************************************** PP

  Flavodoxin_5  93 ...syvrkflkeklrwqpklvgvfaGaldysklslfdrlmiklimkmtkgetdt 143
                      +y+ kfl++++ w+p+ ++vfaGal y+++++fdr+miklim+mt+getdt
    EHT98690.1  99 etnAYTVKFLAQSP-WKPDCCAVFAGALYYPRYRWFDRVMIKLIMRMTGGETDT 151
                   *999999***9997.*************************************98 PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   8.3e-11   3.7e-07       1      65 [.       4      71 ..       4     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 8.3e-11
  Flavodoxin_3  1 lilysSltGNTkkvAeaikealeeekeivsikeakek...veeadvvfvGfwvdkgtadeealkflet 65
                  lil+s++ G T+k+A+a++ea+++e+++  ++ ++++    +++d v++G+ ++ g+++ ++++f+++
    EHT98690.1  4 LILFSTRDGQTQKIASAMAEAIKGEQACDVMNIQDANaidWQQYDRVLIGASIRYGHFQPAVNEFVKQ 71
                  699*********************777765555555566999***************99999998764 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1     1e-08   4.5e-05       1      66 [.       5      66 ..       5     178 .] 0.82

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1e-08
                  EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGH CS
  Flavodoxin_1  1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppenge 66
                  il+ +  G+t+k+A ++ae ++ ++   dv++++d++  + +  +++ +l+++s    G ++   +
    EHT98690.1  5 ILFSTRDGQTQKIASAMAEAIKGEQ-ACDVMNIQDAN--AIDWQQYDRVLIGAS-IRYGHFQPAVN 66
                  89********************755.59*********..57************9.77777764444 PP

>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.8e-05      0.21      99     150 ..       9      68 ..       3      76 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.8e-05
                   TTSB-HH..HHHHHHHHHHHH..CT-SEEEE-EESCETTCHHCHHHHHH.........HHHHH CS
                   xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx RF
  Peptidase_S8  99 tsggsmetgteliraieeaae..dkvdvinmslgestslpktgrsieal.........ainra 150
                   t++g+    +++++a+ ea++  + +dv+n+   ++ ++++++r+   +         a+n++
    EHT98690.1   9 TRDGQT---QKIASAMAEAIKgeQACDVMNIQDANAIDWQQYDRVLIGAsiryghfqpAVNEF 68 
                   555444...8999999999998899******************98544455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1383.36
//
Query:       EHT98691.1  [L=169]
Description: molybdopterin-guanine dinucleotide biosynthesis protein B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-49  166.0   0.0    4.5e-49  165.8   0.0    1.1  1  MobB      Molybdopterin guanine dinucleotide synthesis protei
     0.0017   18.0   0.0      0.003   17.2   0.0    1.5  1  cobW      CobW/HypB/UreG, nucleotide-binding domain
     0.0052   17.0   0.1      0.011   16.0   0.1    1.7  1  AAA_22    AAA domain
  ------ inclusion threshold ------
      0.029   13.5   0.0      0.036   13.2   0.0    1.2  1  LpxK      Tetraacyldisaccharide-1-P 4'-kinase
      0.042   13.7   0.0      0.081   12.8   0.0    1.4  1  NTPase_1  NTPase
      0.055   13.8   0.0      0.064   13.6   0.0    1.4  1  AAA_16    AAA ATPase domain
      0.078   12.7   0.0       0.12   12.1   0.0    1.3  1  AAA_30    AAA domain


Domain annotation for each model (and alignments):
>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.0   1.7e-52   4.5e-49       2     133 .]       6     138 ..       5     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 1.7e-52
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyrhrkAGAkevlvaskerlalikeleeaelsleellarlse..vDlvlvEG 98 
                 l+iv++sg+GKTtLle++ip lka+g+r g+iKh+hh++dvd+pgkDsyr+rkAGA++v+vas++r+a+++e+ e+++sl+ l++r+++  +DlvlvEG
  EHT98691.1   6 LAIVAWSGTGKTTLLEQVIPLLKAQGIRAGLIKHTHHQMDVDTPGKDSYRLRKAGADQVIVASDRRWAMMCETPEQSVSLRMLASRMDStqLDLVLVEG 104
                 89***********************************************************************999***********6557******** PP

        MobB  99 fkkealpkievlraelgkeelllledekliavvsd 133
                 fk+e++pk++++r+ ++ e  + l de+++avv+d
  EHT98691.1 105 FKDEPVPKMVLWRSGVKGEL-IDLLDEHVVAVVTD 138
                 ***************98855.56679*******97 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06     0.003       2      89 ..       5     103 ..       4     145 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                 EEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCC.....CCCCHCCCT.....EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEE CS
        cobW   2 vtvltGflGsGKTtLlnhll..enraglklavivNefgevsiD.....aellretgve....ivelenGciCctlredllkelealeereerldviliE 89 
                  + ++   G+GKTtLl++++   +++g +  +i     ++++D     + +lr++g+     + +     +C t ++ ++  + a   ++ +ld++l+E
  EHT98691.1   5 LLAIVAWSGTGKTTLLEQVIplLKAQGIRAGLIKHTHHQMDVDtpgkdSYRLRKAGADqvivASDRRWAMMCETPEQSVSLRMLASRMDSTQLDLVLVE 103
                 56788999************99999********998887777611111445566644444322233334556665555554444444444677777777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.4e-06     0.011       7      52 ..       5      53 ..       4     104 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.4e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpssts 52
                +l++++ sGtGKTtll+++   l+++   +    +  +++ v+ p++ s
  EHT98691.1  5 LLAIVAWSGTGKTTLLEQVIPLLKAQGIRAGlikHTHHQMDVDTPGKDS 53
                589****************999977666666777777777777766664 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.036      43     124 ..       9      89 ..       1     110 [. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
                 SBSS-HSHHHHHHHHHHHTTTS..-EEEEE--TSSSS-S.EEEEEETT-HHHH-HHHHHHHHHST.SEEEEESSHHHHHHHHH CS
        LpxK  43 itvGGtGKTPlvialvkllqarglkvgvlSRGYggkskgapvlvsaessaaevGDEplllarrtg.vpvvVgsdRvaaarall 124
                 + + GtGKT l ++++ ll+a+g+++g +   + +   ++p   +++ + +++G + ++ a++ + ++++  ++   ++r+l+
  EHT98691.1   9 VAWSGTGKTTLLEQVIPLLKAQGIRAGLIKHTHHQMDVDTP--GKDSYRLRKAGADQVIVASDRRwAMMCETPEQSVSLRMLA 89 
                 6789***********************99776666443322..3333366666666666666665455555555555555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.2e-05     0.081       5      30 ..       9      34 ..       6      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
                E--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1  5 TGppGvGKtTlvkkvlellkssgvkv 30
                 + +G+GKtTl+++v+ llk +g++ 
  EHT98691.1  9 VAWSGTGKTTLLEQVIPLLKAQGIRA 34
                5668****************999985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.064      25      66 ..       4      45 ..       1     141 [. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa 66
                +l+ ++  sG+GK++l++++   l+++g+ +   k ++++++
  EHT98691.1  4 PLLAIVAWSGTGKTTLLEQVIPLLKAQGIRAGLIKHTHHQMD 45
                567788889************777777666644444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05      0.12      22      48 ..       7      33 ..       4      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
      AAA_30 22 vltGpAGtGKttalkalreaweaaggr 48
                ++++  GtGKtt+l+++  +++a+g r
  EHT98691.1  7 AIVAWSGTGKTTLLEQVIPLLKAQGIR 33
                689999**************9999955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1343.75
//
Query:       EHT98692.1  [L=196]
Description: molybdopterin-guanine dinucleotide synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-34  119.2   0.1    2.6e-34  118.9   0.1    1.1  1  NTP_transf_3     MobA-like NTP transferase domain
     0.0024   17.6   0.1     0.0038   17.0   0.1    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
  ------ inclusion threshold ------
      0.077   12.6   0.1        0.1   12.1   0.1    1.2  1  NTP_transferase  Nucleotidyl transferase
       0.12   12.3   0.0       0.19   11.6   0.0    1.3  1  CTP_transf_3     Cytidylyltransferase


Domain annotation for each model (and alignments):
>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.1   5.8e-38   2.6e-34       1     157 [.       6     158 ..       6     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 5.8e-38
                   EEEEEESS-TTTTT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS.-SHHHHHHHHHHHH.SSSCEEEEETT CS
  NTP_transf_3   1 aviLAGGrSsRmgg.dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrvvededpg.kgplaslaaalraaadadavlvlacD 95 
                   +viLAGG+++Rm g dK l+ l+gkpl+++vl++l+++ vd v+++++++ +  +++ +g++vv+d+ ++  gpla+++++lr++  +++v+++acD
    EHT98692.1   6 GVILAGGQGRRMRGqDKGLIMLQGKPLYQHVLQRLKPQ-VDIVLISANRN-ID-RYQISGCQVVADTMQDyPGPLAGMLSGLRNS-PTEWVAFCACD 98 
                   79**********877***********************.98888888875.54.57789*******888549***********98.8********** PP

                   -TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEECC..EEEGGGHHHHHHHCTHTTHHHCHHHH CS
  NTP_transf_3  96 mPlltpelverllaaaaasgadvvvptyegerghpl..lfrarllsalaallgdqgarrllrrl 157
                   +P ++ ++v+rl+++    +a vv+++ + er hp   l++++l+ +l+a l  +g+rrl++ +
    EHT98692.1  99 TPDIPGDFVARLWQQRN--SAPVVWVQ-SSERDHPTlaLMNRALIGDLEAGLL-RGERRLMQFM 158
                   **************964..55555555.556779996677*********8764.6777776643 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   8.6e-07    0.0038       3      53 ..       6      53 ..       4      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.6e-07
                EEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-G CS
        IspD  3 vvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvse 53
                 vi A G+G+Rm+ g++K ++ l+g++l +h ++ l    +vd +++  ++
  EHT98692.1  6 GVILAGGQGRRMR-GQDKGLIMLQGKPLYQHVLQRLKP--QVDIVLISANR 53
                5999********6.899*****************9976..89888776554 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.3e-05       0.1       2      55 ..       6      52 ..       5      61 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
                     EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEET CS
  NTP_transferase  2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltq 55
                     +vILaGG+G R++     + k l+   gk +l q++l+rl   +++ i++++ +
       EHT98692.1  6 GVILAGGQGRRMR----GQDKGLIMLQGK-PLYQHVLQRLKP-QVD-IVLISAN 52
                     79*********96....566666666666.*********984.443.4666555 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.3e-05      0.19      14      46 ..      20      50 ..       7      56 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.3e-05
                  TTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEE CS
  CTP_transf_3 14 pgKnlldlggkpliayvleaalkskafekviva 46
                   +K l+ l gkpl+++vl++++    ++ v ++
    EHT98692.1 20 QDKGLIMLQGKPLYQHVLQRLKP--QVDIVLIS 50
                  5899****************976..44555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1596.52
//
Query:       EHT98693.1  [L=91]
Description: uncharacterized DUF1040 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-41  138.6   0.1    7.2e-41  138.5   0.1    1.0  1  DUF1040   Protein of unknown function (DUF1040)


Domain annotation for each model (and alignments):
>> DUF1040  Protein of unknown function (DUF1040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.1     4e-45   7.2e-41       1      86 []       1      86 [.       1      86 [. 0.99

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 4e-45
     DUF1040  1 mkchrinellellqpeWkkekdlnllqllqklaeeagfegeleeltddvliyhlkmresdkeemiPGlkkdyeedfktallkarGi 86
                mk+hr+ ellellqp+W+ke+dlnll +lqkla+ +gf g+l+el+dd+liyhlkmr+s ++++iPGlkkdye dfktall+arG+
  EHT98693.1  1 MKTHRLSELLELLQPAWEKEPDLNLLAFLQKLAQASGFVGPLSELSDDILIYHLKMRDSASHDQIPGLKKDYEVDFKTALLRARGV 86
                9************************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 737.11
//
Query:       EHT98694.1  [L=328]
Description: regulator of disulfide oxidoreductase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-41  142.6   3.4    1.8e-41  142.6   3.4    1.6  2  APH       Phosphotransferase enzyme family
     0.0095   15.3   0.0      0.014   14.7   0.0    1.3  1  EcKinase  Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   3.4     2e-45   1.8e-41       4     229 ..      33     253 ..      30     266 .. 0.78
   2 ?   -1.5   0.1      0.21   1.9e+03     201     220 ..     274     293 ..     267     317 .. 0.73

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 2e-45
                 EE--.SSCEEEEEEETT.--EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHH CS
         APH   4 elsggasnrtylvttpa.gryvlrrnppa.raaeeirrevallrlLakagv..pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpelleal 98 
                 +l++ ++nr+y++ +++ +ryv ++++p+ ++ae+i +e+++ + L + +v   +P vl g t ++++g++fa++++++gr++++     + +++ e++
  EHT98694.1  33 ALNS-YENRVYQFSDDNrQRYVAKFYRPQrWSAEQITEEHQFSHDLLGDEVpiAAPLVLKGNTLQQHAGFYFAVFPSLGGRQYET-----DNDDQMEWV 125
                 5666.9***********78************************9998888977899999**************************.....9******** PP

                 HHHHCCHHCH.-STTTB-SHHC....HTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH.......HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTE CS
         APH  99 geflaalhqvdpaalpladfla....qdlellrqlesatarllaselldlleeleeq.......vlaalaallpgelptvllHgDlhpgNllvdpddgr 186
                 g+fl+++hq+ ++++ +++++      +l++ r++ + +  l+++    l+ +l e+       +++++ ++++    +  lHgD+hpgN+l++  dg+
  EHT98694.1 126 GRFLGRMHQT-GRKNLFRHRPSmgldEYLDQPRDVLANA-ELVPAS---LRSALSEAvdklgmtLRQCWHDNWQ----PLRLHGDCHPGNILWR--DGP 213
                 **********.5555555555411113333333333332.222222...2223333222222226666666666....****************..9** PP

                 EEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHHHHC CS
         APH 187 vtGviDfedaglgpplyDlavllrswtseldpeflaallraye 229
                 +  ++D++da+ gp+++Dl++l+ s +  ++  + ++ll+ay 
  EHT98694.1 214 L--FVDLDDARNGPAVQDLWMLI-SGDKQEQRIQWDILLEAYS 253
                 *..********************.8888888888888888886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.21
                 CCHHHHCCHHHCSCHCCCHC CS
         APH 201 plyDlavllrswtseldpef 220
                 ++y la+++r+w ++++p+ 
  EHT98694.1 274 MIYYLAWVVRRWQDPAFPRA 293
                 56668888877777777654 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-06     0.014     190     282 ..     172     253 ..     127     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-06
    EcKinase 190 ekleklkenlferllelveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyflytsteeelrkekfdellriYh 282
                  +l ++ ++l   l+++++++ ++++  +HGD++  Ni+ +          ++vD+  +r g+ ++DL++++  s +++ ++ ++d ll++Y 
  EHT98694.1 172 SALSEAVDKLGMTLRQCWHDNWQPLR--LHGDCHPGNILWRDG-------PLFVDLDDARNGPAVQDLWMLI--SGDKQEQRIQWDILLEAYS 253
                 66777777888888888877777777..7***********886.......47****************9876..6677777889999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2837.73
//
Query:       EHT98695.1  [L=209]
Description: periplasmic protein disulfide isomerase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-26   92.0   3.5    7.4e-25   87.9   3.5    2.0  1  DSBA           DSBA-like thioredoxin domain
    6.8e-11   42.6   0.0    9.4e-11   42.1   0.0    1.1  1  Thioredoxin_4  Thioredoxin
     0.0015   18.5   0.1        0.3   11.1   0.1    2.3  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
       0.03   14.0   0.3       0.17   11.5   0.0    2.0  2  Thioredoxin_5  Thioredoxin
      0.097   12.9   0.2       0.91    9.8   0.0    2.2  2  Glutaredoxin   Glutaredoxin
        0.1   12.7   0.0        5.1    7.2   0.0    2.3  2  Thioredoxin_3  Thioredoxin domain
       0.16   11.7   0.0        2.7    7.8   0.0    2.5  3  DUF3088        Protein of unknown function (DUF3088)


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   3.5   2.9e-28   7.4e-25       1     180 [.      40     182 ..      40     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 2.9e-28
                 EEEEEEBTTBHHHHHHHHHHHHHHHHC....CTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHH.HHHHHHHHHH CS
        DSBA   1 tvdeffDvlCPyCylgkerleklaars....pdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklk.nstraarlll 94 
                 +v eff++ CP+Cy+++e ++  +a +     d+k+v++++++ g+                                        l+   t a+++++
  EHT98695.1  40 QVMEFFSFFCPHCYQFEEIYHVSDAVKknlpADTKMVKYHVDFLGG---------------------------------------ELGpVVTHAWAVAM 99 
                 589****************9999999999*888*************.......................................4555699******* PP

                 HHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHH.TTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTCEEEE CS
        DSBA  95 aagaeglaekvvrelfealwsegqaitddqellevaek.aGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmvf 180
                 a+g e+   kv  ++f+ +++ +q+itd+++l++v+ k aG+  e++d a++s+avk  v+++++aa++++++GvP+++++gk+mv 
  EHT98695.1 100 ALGVED---KVTAPIFDGIQK-TQTITDPASLKDVFIKaAGITSEQYDSAWNSFAVKALVAQQQKAAADVDLRGVPAIFINGKYMVN 182
                 *****9...9*********99.99**********986527*******************************************6654 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.7e-14   9.4e-11      16     152 ..      40     181 ..      34     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 3.7e-14
                    EEEEEE-TT-HHHHHHHHHHH..HHHHHHHHTT.SEEEEEEE-..---S.TTTHHHHHHHTT--TT...HHHHHHHHHHHHTHHHHTTS-HHHHH. CS
  Thioredoxin_4  16 tvieyedlrCphCakfeeeve..klleeyidtG.kvkfiirdfpldkek.eslkaamaarcagees...peaflaikallysqqeewaeslkela. 103
                     v+e+ ++ CphC +fee +     +++ + ++ k+   + df   + +   + a  +a+++g e+      f +i++   ++ +++a   k++  
     EHT98695.1  40 QVMEFFSFFCPHCYQFEEIYHvsDAVKKNLPADtKMVKYHVDFLGGELGpVVTHAWAVAMALGVEDkvtAPIFDGIQK--TQTITDPASL-KDVFi 132
                    599***************876557777777777665555667745455544555555555555554000445555555..2233344444.55555 PP

                    .....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE- CS
  Thioredoxin_4 104 aealdkdekfeacleeekldalveaeskeakkagiestPtfiingekve 152
                    ++a+ + e+ +++ ++  ++alv++++k a   ++ ++P ++ing+ + 
     EHT98695.1 133 KAAGITSEQYDSAWNSFAVKALVAQQQKAAADVDLRGVPAIFINGKYMV 181
                    999******************************************9864 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00012       0.3      19      57 ..      38      79 ..      27      84 .. 0.72
   2 !    5.3   0.0    0.0076        19      54     101 ..     151     195 ..     134     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                 SEEEEEEE-TTSHHHHCHHHHHH...HHHHHCTTTSEEEEEE CS
  Thioredoxin 19 klvlveFyApwCghCkalaPele...klaeelkdkvklakvd 57
                 ++ ++eF++ +C+hC +++  ++   +++++l ++ k++k  
   EHT98695.1 38 EPQVMEFFSFFCPHCYQFEEIYHvsdAVKKNLPADTKMVKYH 79
                 67899***********99987751113444444477777655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0076
                  EEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin  54 akvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                  +k  v ++++ a++++ +g+P++  f ngk++ +  g  + +++++f+
   EHT98695.1 151 VKALVAQQQKAAADVDLRGVPAI--FINGKYMVNNGGLDT-SSMENFV 195
                  5556788999************9..668886666555444.6666665 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.2   5.1e+02       5      17 ..      46      58 ..      43      75 .. 0.81
   2 ?   11.5   0.0   6.7e-05      0.17     106     170 ..     117     183 ..     114     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.2
  Thioredoxin_5  5 dPlcseCweiEpe 17
                     +c++C+++E++
     EHT98695.1 46 SFFCPHCYQFEEI 58
                   5589*****9975 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.7e-05
  Thioredoxin_5 106 ekkniskeellleiaeka.glDveefkeDlesklakkafqcDlklakemgvtevPtlvffn.eneee 170
                    + ++i++   l++++ ka g+  e++   ++s  +k    + +k a++++ + vP++++     +++
     EHT98695.1 117 KTQTITDPASLKDVFIKAaGITSEQYDSAWNSFAVKALVAQQQKAAADVDLRGVPAIFINGkYMVNN 183
                    56778888888887655439*************99999999**************998765334444 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.27   6.9e+02       5      14 ..      45      54 ..      41      69 .. 0.80
   2 ?    9.8   0.0   0.00036      0.91      43      59 ..     163     179 ..     149     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.27
                  ESTSSHHHHH CS
  Glutaredoxin  5 tkptCpyCkk 14
                   +  Cp+C +
    EHT98695.1 45 FSFFCPHCYQ 54
                  5678****76 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00036
                   HHHTSSSSSEEEETTEE CS
  Glutaredoxin  43 elsgvrtvPqvfidgkh 59 
                   + ++ r vP +fi+gk+
    EHT98695.1 163 ADVDLRGVPAIFINGKY 179
                   3348999********98 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.037        96      10      27 ..      49      68 ..      40      82 .. 0.61
   2 ?    7.2   0.0     0.002       5.1      43      61 ..     163     181 ..     147     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.037
                   STTCHHHHHH..HHHHCHCC CS
  Thioredoxin_3 10 CakCpkleka..vkeaaaek 27
                   C++C+++e++  v  a++++
     EHT98695.1 49 CPHCYQFEEIyhVSDAVKKN 68
                   *****998872233444444 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.002
                    HHCT-SSSSEEECTTCEEE CS
  Thioredoxin_3  43 ekygVmsvPalvidgkvvv 61 
                    ++   + vPa++i+gk  v
     EHT98695.1 163 ADVDLRGVPAIFINGKYMV 181
                    6777889********9865 PP

>> DUF3088  Protein of unknown function (DUF3088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.001       2.7      20      43 ..      46      69 ..      31      79 .. 0.84
   2 ?    0.6   0.0      0.18   4.5e+02      22      49 ..     144     171 ..     127     175 .. 0.85
   3 ?   -0.7   0.0      0.47   1.2e+03      64     106 ..     166     207 ..     161     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.001
     DUF3088 20 rfyCpdcaaleGllasfPalaekl 43
                +f+Cp+c ++e +  ++ a++++l
  EHT98695.1 46 SFFCPHCYQFEEIYHVSDAVKKNL 69
                69***********99999888876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
     DUF3088  22 yCpdcaaleGllasfPalaekldvervd 49 
                   +++ a+++l+a + + a+ +d++ v+
  EHT98695.1 144 SAWNSFAVKALVAQQQKAAADVDLRGVP 171
                 5689999****************99886 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.47
     DUF3088  64 enqslPvLvLadgaakaapvkakeaegrrfiedkkrIlelLae 106
                 + +++P++ ++ +    ++    +++ ++f++d ++++++L e
  EHT98695.1 166 DLRGVPAIFINGKY-MVNNGGLDTSSMENFVADYANVVKFLVE 207
                 55667776666666.3444445567888999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1645.20
//
Query:       EHT98696.1  [L=927]
Description: DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     8e-155  515.5   0.0   1.1e-154  515.0   0.0    1.2  1  DNA_pol_A       DNA polymerase family A
    5.9e-55  185.5   0.0      1e-54  184.7   0.0    1.4  1  5_3_exonuc_N    5'-3' exonuclease, N-terminal resolvase-like 
    9.4e-41  139.4   1.1    1.7e-40  138.6   1.1    1.5  1  DNA_pol_A_exo1  3'-5' exonuclease
    5.3e-29  100.7   0.0    1.7e-28   99.1   0.0    2.0  1  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.038   13.9   0.1    2.0  1  HHH             Helix-hairpin-helix motif
       0.05   14.1   0.2       0.27   11.7   0.0    2.3  2  SCP2            SCP-2 sterol transfer family
      0.076   12.6   0.0       0.23   11.1   0.0    1.8  1  DUF2529         Domain of unknown function (DUF2529)
      0.083   13.5   0.2       0.62   10.7   0.0    2.6  3  HHH_5           Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.0   0.0    5e-158  1.1e-154       4     375 ..     550     924 ..     547     925 .. 0.98

  Alignments for each domain:
  == domain 1  score: 515.0 bits;  conditional E-value: 5e-158
                 HHHHHHHHHHHHHHHHHHHHHHSSC.-STTTCCCCHHHHTCCCCS.TTSBETTS.BTTTCCHHHHHT.S.CHHHHHHHHHHHHHHHHHTTTTGGGCCBT CS
   DNA_pol_A   4 leelseeleeeleeleeeiyelage.fnlnSpkqlaevLfeklklpekkktktg.ystdeevLekla.khplaklileyrelsklkstyvdallklink 99 
                 l++ s+el+++l+ele+e++elage fnl+S+kql+ +Lfek +++++kkt+ g +st+eevL +la ++pl+k+ile+r lsklksty+d+l+ +in+
  EHT98696.1 550 LAQHSKELTARLAELEREAHELAGEpFNLSSTKQLQVILFEKQGIKPTKKTPGGaPSTSEEVLAELAlDYPLPKVILEHRGLSKLKSTYTDKLPLMINP 648
                 7899********************77*************************9999***********988****************************** PP

                 TTSEE--EEESSSSSSSS-EEESS-GGGS-TTSCCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHHHHHHTTH-HHHHHHHHHCTS.GGG CS
   DNA_pol_A 100 ktgrihtsfnqtvtatGrlsssepnlqnipirteegrriRkafvaeegghvllsaDysqiELRilAhlsgdeklieafkegeDiHsktAsevfgvpvee 198
                  tgr+hts++q+vtatGrlss++pnlqnip+r++egrriR+afva +g+  +++aDysqiELRi+Ahls+d+ l++af++geDiH++tA+evfgvp+++
  EHT98696.1 649 VTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGN-RIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATAAEVFGVPLSK 746
                 **********************************************965.5************************************************ PP

                 HHHHHHHHHHHHHHHHHTT--HHHHHHHHTSSHHHHHHHHHHHHHHSHHHHHHHHHHHHHCCCECCEEETTCSEEEECTTT-CCHCCCHHHHHHHHHHH CS
   DNA_pol_A 199 vtkeqRrqaKainfGiiYGagakgLaeqlgiseeeAkefiekyferypgvksyleetleeakekgyvetllgrrrylpeiksknaalrekaeraavNap 297
                 vt eqRr+aKainfG+iYG++a+gL++ql+i   eAk++++ yferypgv +y+e+t + a+++gyvetl grr +lp+iks+na +r++aeraa+Nap
  EHT98696.1 747 VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAP 845
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTT-S.EEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHSSS--EEEEEEESSCC CS
   DNA_pol_A 298 iQGsAaDiiklamikieealkeeklk.arlllqvHDElvfevpeeeveevaelvkeamesaveldvplkvevkvGknWg 375
                 +QG+AaDiik ami+++++l+e++ +  ++++qvHDElvfe++ee ve++++ +++ me ++ ldvpl vev+vG+nW+
  EHT98696.1 846 MQGTAADIIKRAMIAVDNWLQEQRSDaVKMIMQVHDELVFEIKEEAVEAASKQIRTLMEGSMALDVPLLVEVGVGDNWE 924
                 ********************999875489*************************************************8 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   4.6e-58     1e-54       2     159 .]       9     170 ..       8     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 4.6e-58
  5_3_exonuc_N   2 llLiDgsslifRayyal..lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanReetpeelkeqlplikevlealgik 96 
                   l+L+Dgss+++Ray+a+  lt+s gept+a+yg+lnml +ll +++pth+avvfDak+ktfR+el+++YK++R+++p++l++q++ ++e+++a+g++
    EHT98696.1   9 LILVDGSSYLYRAYHAFppLTNSAGEPTGAMYGVLNMLKSLLVQYSPTHVAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLP 105
                   89**************99*************************************9999************************************** PP

  5_3_exonuc_N  97 vlevegyEADDvigtlakraeeeg..vvivsgDkDllQlvednvrvldvkkeelldeeevaekyg 159
                   +l v+g+EADDvigtla +ae++g  v i +gDkD++Qlv++ ++++++ ++++l++eev++kyg
    EHT98696.1 106 LLAVSGVEADDVIGTLALEAEKKGysVLISTGDKDMAQLVTPAITLINTMTNTILGPEEVEQKYG 170
                   *******************9987678***************9******555778*********98 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   1.1   7.6e-44   1.7e-40       1     176 []     328     515 ..     328     515 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 7.6e-44
                     EEEEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-.......HGHHHHHHHT-TTSEEEESSHHHH CS
  DNA_pol_A_exo1   1 yeivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddv.......alealkrlledenitkvghnakfD 88 
                     y+++ d+++l++++e+lk+++v+a+D Et++ld+++a+ v+ ++++  +e+ay+++ +++ d++       +l +lk+lled+ ++kvg+n+k+D
      EHT98696.1 328 YVTILDQQTLDNWVEKLKKSDVFAFDLETDALDTLTANIVGLSFAIAPGEAAYLPVAHDYLDAPeqldrdaVLAQLKPLLEDPDVSKVGQNLKYD 422
                     7899******************************************************************************************* PP

                     HHHHHHHHTS--SSE.EEHHHHHHHTTHSTT.SSHHHHHHHHHSB---GHCCTTSSTTT....SSS-HHHHHHHHHHHHHTHHHHHHHHHHHHH CS
  DNA_pol_A_exo1  89 levlardfgielenl.fdtmlaayvldyers.hsLdsLaekylgdleldkeeqiakwqk....arplleeqllYAaeDadvllrlfkkLtkele 176
                     + vl++ ++iel ++ +dtml +y+l+   + h++dsL +++l++ ++++ee+++k+++    +++ le++  YAaeDadv+l+l+ k+++ele
      EHT98696.1 423 RGVLKN-YDIELAGIkYDTMLESYILNSVVGkHDMDSLSARWLNHKTVTFEEIAGKGKNqltfNQIALEQAAHYAAEDADVTLQLHLKMWPELE 515
                     ******.999999995678********99999***********************************************************996 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   7.5e-32   1.7e-28       1      95 [.     171     271 ..     171     273 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 7.5e-32
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelke......kklkekLeenkeearlskkLatiktdvpleleledlklke 93 
                 v+P+ iid++a++GDssDnipGvpg+GektA++Ll+  g +++i++nld++++      k++++kLe+n+e a+ls++Latiktdv l+   e+l++ e
  EHT98696.1 171 VPPALIIDFLAMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADlsfrgaKTMATKLEQNREVAFLSYQLATIKTDVALDQPCEALTVGE 269
                 78***********************************************98887888878899*******************************99999 PP

  5_3_exonuc  94 pd 95 
                 pd
  EHT98696.1 270 PD 271
                 87 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.7e-05     0.038      16      28 ..     193     205 ..     192     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                 STT-SHHHHHHHH CS
         HHH  16 lPGVGpktAeaIl 28 
                 +PGVG+ktA+a l
  EHT98696.1 193 VPGVGEKTAQALL 205
                 9**********98 PP

>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.1   9.1e+03      13      33 ..     337     359 ..     331     370 .. 0.75
   2 ?   11.7   0.0   0.00012      0.27      32      81 ..     477     526 ..     452     529 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.1
                 HHHHHCCH-E..EEEEEECTC.T CS
        SCP2  13 kkealkklag..vlrfdltdlkg 33 
                  ++ ++kl+   v++fdl+  ++
  EHT98696.1 337 LDNWVEKLKKsdVFAFDLETDAL 359
                 56668889989999999988755 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                 .TEEEEEETTSTEEESSCTT.BS-SEEEEEEHHHHHHHHCTSS-HHHHHHT CS
        SCP2  32 kgsltldlkegqldvaakde.gkadvtlslsledllelaegklnpqkafmq 81 
                 kg+ +l++++ +l+ aa+++ ++advtl+l l+ ++el e++++p k+f q
  EHT98696.1 477 KGKNQLTFNQIALEQAAHYAaEDADVTLQLHLKMWPEL-EKEAGPKKVFEQ 526
                 367899999988888999999*****************.555699999865 PP

>> DUF2529  Domain of unknown function (DUF2529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.23      92     155 ..     116     179 ..     101     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHT--EEEEESS---T..TGGGSSS-EE----S-SEE-TTS-EE---HHHHHHH CS
     DUF2529  92 ealklakkleekgievvavsskvkeedalteladvfidlklkkglvptedgeriglPsliaaly 155
                 +++  ++   ek+   v++s+ +k+  +l++ a + i++ ++  l p+e  +++g+P +++  +
  EHT98696.1 116 DVIGTLALEAEKKGYSVLISTGDKDMAQLVTPAITLINTMTNTILGPEEVEQKYGVPPALIIDF 179
                 555555555566667799***************************************9999877 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028      0.62       7      21 ..     193     207 ..     178     225 .. 0.69
   2 ?   -3.6   0.0         8   1.8e+04      45      57 .]     334     346 ..     332     346 .. 0.85
   3 ?   -2.1   0.0       2.8   6.3e+03      17      42 ..     720     749 ..     719     758 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                 STT--HHHHHHHHTT CS
       HHH_5   7 vsGiGpktAlallsa 21 
                 v+G+G+ktA all +
  EHT98696.1 193 VPGVGEKTAQALLQG 207
                 555555555555544 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8
                 HHHHHHHHHHHHH CS
       HHH_5  45 kktAeriilelkd 57 
                 + t +++++ lk+
  EHT98696.1 334 QQTLDNWVEKLKK 346
                 67999*****997 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.8
                 HHHTTT--SHHHHHHS-HHH.....HHTSTT CS
       HHH_5  17 allsaGiesvedlaaadvee.....LakipG 42 
                  ll+a +++ ed+ +a+++e     L+k++G
  EHT98696.1 720 GLLDA-FSQGEDIHRATAAEvfgvpLSKVTG 749
                 58888.8888999999999866666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.39
# Mc/sec: 7089.68
//
Query:       EHT98697.1  [L=211]
Description: GTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-20   73.6   0.0      2e-20   73.0   0.0    1.3  1  MMR_HSR1      50S ribosome-binding GTPase
      1e-07   32.0   0.1    0.00054   19.9   0.0    2.2  2  RsgA_GTPase   RsgA GTPase
    7.1e-06   25.6   0.0    9.7e-06   25.2   0.0    1.2  1  FeoB_N        Ferrous iron transport protein B
    0.00023   21.3   0.0       0.15   12.1   0.1    2.2  2  Dynamin_N     Dynamin family
     0.0039   16.8   0.1       0.06   12.9   0.0    2.1  2  GTP_EFTU      Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.024   14.0   0.0    1.4  1  SRPRB         Signal recognition particle receptor beta subun
      0.018   14.8   0.1       0.31   10.8   0.1    2.4  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
      0.019   14.7   0.0       0.03   14.0   0.0    1.3  1  PGM_PMM_I     Phosphoglucomutase/phosphomannomutase, alpha/be
      0.022   14.1   0.0      0.026   13.9   0.0    1.2  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.033   14.5   0.0       0.05   13.9   0.0    1.2  1  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.1e-23     2e-20       1     114 []      28     146 ..      28     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.1e-23
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS......SHHHHHH.HHHHHHHHHHCT.SEEEEEEETTTTC CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpGli......egaseek.glgkaflaleea.dlillvvdaseek 89 
                 eva++Gr+N+GKS+ +n+lt++   a++s++pg T+ in ++v+++    +lvD+pG +      e+ + ++ +   ++l++++a + +++++d++ + 
  EHT98697.1  28 EVAFAGRSNAGKSSALNTLTNQksLARTSKTPGRTQLINLFEVAEG---KRLVDLPG-YgyaevpEEMKLKWqRALGEYLQKRQAlKGLVVLMDIR-HP 121
                 69*******************85568*****************943...49******.6444333467777775555556566644********99.88 PP

                 SHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  90 lkpldeeleelleeakkplilvlnk 114
                 lk+ld+++ ++  ++++p++l+l+k
  EHT98697.1 122 LKDLDQQMIQWAVDSGIPVLLLLTK 146
                 ***********999*****999987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     3e-07   0.00054     102     161 ..      29      82 ..       4      88 .. 0.84
   2 !   10.2   0.0   0.00028       0.5      36      99 ..     127     195 ..     109     200 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3e-07
                  EEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  ++++G S +GKS+ +n+l+++++   + +s++   G+  T+  +l+e+aeg  l+D PG 
   EHT98697.1  29 VAFAGRSNAGKSSALNTLTNQKS--LARTSKT--PGR--TQLINLFEVAEGKRLVDLPGY 82 
                  689****************9854..4555665..455..999*****************6 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00028
                  HHHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHT..TSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeee...eleelkeeleal..gyevllvsaktkegleelkellkd 99 
                  ++++  a ++gi+++++l+K+D l +     +l+ +ke+  a+  +++v + s+ +k g+++++++l++
   EHT98697.1 127 QQMIQWAVDSGIPVLLLLTKADKLASGArkaQLNMVKEASLAFmgDVQVEVFSSLKKIGVDKVRHKLNS 195
                  3455668899************99988855544444444333222578888888888899988888865 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.4e-09   9.7e-06       2     154 ..      28     191 ..      27     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.4e-09
                 EEEEEESTTSSHHHHHHHHHTTS..EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHH.....HHHHH.CTSSSEEEEEEEGGGHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak..qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekva.....rdfll.eeepdvvvnvvdatnle 92 
                 +va++G  n+Gk++ +n+lt++k   + +  pG t   +  ++    +  ++vDlPG Y   ++ ee k+       ++l  ++  + +v ++d  +  
  EHT98697.1  28 EVAFAGRSNAGKSSALNTLTNQKslARTSKTPGRTQLINLFEVA---EGKRLVDLPG-YGYAEVPEEMKLKwqralGEYLQkRQALKGLVVLMDIRHPL 122
                 79******************998445899999999777766666...67799*****.5666666665544111114677734557899999*****99 PP

                 HHH..HHHHHHHHTTSSEEEEEETHHHHHHTTEE.....E-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  93 rnL..yLtlqllelgvpvvlalnmideaekkgie.....idlkkLsekLgvpvvktsakkkegieellk 154
                 ++L  +++   ++ g+pv+l l + d++ +   +     + +++L+ + +v+v  +s+ kk g++++++
  EHT98697.1 123 KDLdqQMIQWAVDSGIPVLLLLTKADKLASGARKaqlnmVKEASLAFMGDVQVEVFSSLKKIGVDKVRH 191
                 9995446667899*************9765433300111445566666678888899999999998876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   8.3e-05      0.15       1      29 [.      29      57 ..      29      65 .. 0.86
   2 !    7.1   0.0    0.0028       5.1     102     156 ..      73     136 ..      63     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.3e-05
                EEEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpn 29
                +a+ G  ++GKSS ln L+ ++ l r + 
  EHT98697.1 29 VAFAGRSNAGKSSALNTLTNQKSLARTSK 57
                6889****************999987654 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0028
                 SEEEEE---B-SSSGTTS......HHHHHHHSTTEE...EEEEEETTS-CCC-CHHHHHHHHST CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq......elvkeyikkadi...ilavtsanhdlsnsealflarevdp 156
                 g  lvDlPG+   ++ ++      + + ey++k+++   ++++++  h l++ +++ ++ +vd+
  EHT98697.1  73 GKRLVDLPGYGYAEVPEEmklkwqRALGEYLQKRQAlkgLVVLMDIRHPLKDLDQQMIQWAVDS 136
                 5579*****9988777777899999999999666552336888999999999888877776664 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.089   1.6e+02       5      29 ..      28      52 ..      25      72 .. 0.81
   2 !   12.9   0.0   3.4e-05      0.06      92     181 ..     107     186 ..     100     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.089
                EEEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktga 29
                 ++++g  ++GK++ + +L+ +++ 
  EHT98697.1 28 EVAFAGRSNAGKSSALNTLTNQKSL 52
                6889999**********99977655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.4e-05
                 HT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTH CS
    GTP_EFTU  92 rvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegv 181
                 ++l g v+++d+++  +   +++++ a + g+p+ ++++K+D+l +  ++ + ++ ++         + ++ g  +v+v   S+lk+ gv
  EHT98697.1 107 QALKGLVVLMDIRHPLKDLDQQMIQWAVDSGIPVLLLLTKADKLASGARKAQLNMVKEA--------SLAFMG--DVQVEVFSSLKKIGV 186
                 5677999999**********************************444444444444333........223333..245555555555555 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.4e-05     0.024       6      84 ..      29     117 ..      26     128 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
                 EEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG....GGTT-SEEEETT-......G..CCSHH..HHHHHHHHGGEEEEEEEEE CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSqessaalkv.ksekgskltliDfPGh......e..klrqk..lleklkaksslkglvfvvD 84 
                 v ++G s++GK s ++ Lt+++   + tS  +  ++ +   e  + ++l+D+PG       e  kl+ +  l e+l++++ lkglv ++D
  EHT98697.1  29 VAFAGRSNAGKSSALNTLTNQK-SLARTSKTPGRTQLInLFEVAEGKRLVDLPGYgyaevpEemKLKWQraLGEYLQKRQALKGLVVLMD 117
                 6799**************9874.4456677666666662235677889*****9633333322244432326777777777999988887 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00017      0.31      45     142 ..     100     194 ..      27     195 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
   PduV-EutP  45 GeylenrklysalivtsaeadvialvqdateeesvfppgfasvfnkeviGiitkidlae...deenieavee.lLksaGaekifevsavekegieellk 139
                 Geyl++r   +al+ + +  d+   ++d ++++  ++         +v+ ++tk+d+      ++++++v+e  L  +G  ++   s+++k+g++++++
  EHT98697.1 100 GEYLQKR---QALKGLVVLMDIRHPLKDLDQQMIQWAVDSG----IPVLLLLTKADKLAsgaRKAQLNMVKEaSLAFMGDVQVEVFSSLKKIGVDKVRH 191
                 5555555...3333333344555555555555554444433....378889999997641226889999986369**********************99 PP

   PduV-EutP 140 yle 142
                  l+
  EHT98697.1 192 KLN 194
                 886 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05      0.03      19      74 ..      88     143 ..      81     155 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                 SCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEE CS
   PGM_PMM_I  19 tpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevill 74 
                  +e+ +k+ +a++eyl+++++ k +vv +D R+  + l +++++ ++ +G+ v+ll
  EHT98697.1  88 PEEMKLKWQRALGEYLQKRQALKGLVVLMDIRHPLKDLDQQMIQWAVDSGIPVLLL 143
                 577889999******************************************99875 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.4e-05     0.026      42     120 ..      29     110 ..      15     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
                   EEEE--TTSSHHHHHHHHHH..HHH.TT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S-B-SHH.HHHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntLil..Sla.tthtPeeVqliliDykgvelsalediphllsvavatdpe.ralraleeLvkemeery 120
                   +  aG++  GKS alntL    Sla t +tP + qli + +   e + l d+p  +  +v+++++ +  ral e +++++  +
    EHT98697.1  29 VAFAGRSNAGKSSALNTLTNqkSLArTSKTPGRTQLINL-FEVAEGKRLVDLPGYGYAEVPEEMKlKWQRALGEYLQKRQALK 110
                   5679**************844499945679*****9988.666699*********9999999999345667777777666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.8e-05      0.05      11     113 ..      32     163 ..      29     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee.............erpevv......fvtlpsst..sskdllrellralglelka.........erlsseell 79 
                  G s +GK+  l++l++q+  +   ++             e++++v      + ++p+++  +++  l e l++ +    a          r+ +++l 
  EHT98697.1  32 AGRSNAGKSSALNTLTNQKSLARTSKTpgrtqlinlfevaEGKRLVdlpgygYAEVPEEMklKWQRALGEYLQKRQ----AlkglvvlmdIRHPLKDLD 126
                 69999*************9877777779999999999888777777777766777777776666666666666666....24458************** PP

      AAA_22  80 ealeqalraravielliiDEaqhlr...seealeeLr 113
                 +++ q + + + ++ll++  a++l    ++++l+ ++
  EHT98697.1 127 QQMIQWAVDSGIPVLLLLTKADKLAsgaRKAQLNMVK 163
                 7777777777777**********98655477777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1769.42
//
Query:       EHT98698.1  [L=172]
Description: uncharacterized DUF414 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-56  189.9   9.6    2.5e-56  189.7   9.6    1.0  1  YihI      Der GTPase activator (YihI)
  ------ inclusion threshold ------
        0.1   12.3   0.5       0.14   11.8   0.5    1.3  1  DUF2228   Uncharacterised conserved protein (DUF2228)


Domain annotation for each model (and alignments):
>> YihI  Der GTPase activator (YihI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   9.6   2.8e-60   2.5e-56       3     156 .]      14     169 ..      12     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 189.7 bits;  conditional E-value: 2.8e-60
        YihI   3 akkkkktreeldaearerKrkkkrkGlksGsRnneeaskeqkkkskkkkDpRiGSkkpvpLvveekvkaekkkkkkaek.ekekklspeqeLakLEnde 100
                 ak+k+k+ree ++ear+rKr+kk++G++sGsR+n++a++++ k+++ +kDpRiGSkkpv L+v+++++++k+kk +a++ +++  l+pe+eLa+LEn e
  EHT98698.1  14 AKAKRKSREEINNEARDRKRDKKHRGHASGSRANPQAQSSNGKQAAPAKDPRIGSKKPVSLIVADNAAPAKTKKVTAKPaKQKVVLTPEEELAQLENSE 112
                 589*********************************99999**************************999998887777577779************** PP

        YihI 101 rLnaLLdrLeegekLskedqkyvdekLdrideLmeeLGie.ddeeeeekdddllqlf 156
                 rL+aLLdrLe+ge+Ls+edq ++d +LdrideLme+LGi  d+e++ e ++d+++l+
  EHT98698.1 113 RLDALLDRLEKGETLSSEDQGWLDVTLDRIDELMEQLGIAmDEEDDPEAEEDMYRLL 169
                 ****************************************999999999*****975 PP

>> DUF2228  Uncharacterised conserved protein (DUF2228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   1.6e-05      0.14     118     210 ..      67     158 ..      13     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.6e-05
     DUF2228 118 akekeisleqkteklkkRkkkvvaktfhgaGivvpvdkktdvGYReLsesdaelkkllkkieeak.....neeerekaleklqelvtavqianDecdf 210
                  ++k +sl  + ++  +++kkv ak+ ++  ++ p ++  +     L e+++ l  ll+ +e+ +     ++   +  l+ ++el+++  ia+De d 
  EHT98698.1  67 GSKKPVSLIVADNAAPAKTKKVTAKPAKQKVVLTPEEELAQ-----L-ENSERLDALLDRLEKGEtlsseDQGWLDVTLDRIDELMEQLGIAMDEEDD 158
                 45666778888899999999999999999988888777444.....4.5567999999999999844322333346789****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1369.18
//
Query:       EHT98699.1  [L=457]
Description: coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-17   64.4   0.1    2.4e-17   63.8   0.1    1.3  1  Radical_SAM     Radical SAM superfamily
    3.5e-09   36.6   0.0    1.1e-08   35.0   0.0    1.9  1  HemN_C          HemN C-terminal domain
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.069   12.8   0.0    1.5  1  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.1     4e-21   2.4e-17       2     164 ..      57     226 ..      56     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 4e-21
                  EEESEESS--TTTSCCTT....HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.TTHHHHHHHHHHTC...CCTEEEEEEECSSCHGH CS
                  xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet....vrregrgrslsveeileevkelkaekgvkevilgggeplly.pdfvellerlakla...vpgiritvetngtlpde 91 
                  v+ ++C++ C fC +++      ++ +r+ +   +ei++ +  ++ +++v ++++ggg+p++  +  v  l +l k +   +++ ++++e+ +  ++ 
   EHT98699.1  57 VHIPFCHRLCYFCGCNKVvtrhLHKADRYLNALEQEIVARAPLFR-DRRVTQLHWGGGTPTFLnKQQVSRLVALLKQHftfEDDAEMSIEVDPREIEL 153
                  789**************9777766677777777777777777775.555***********9862555555666666559**77777777777777778 PP

                  HHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  92 eklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleell 164
                  e+++ l+  g++r+s+g++ +++  v++++nr ++ + + +++ ++re g+++ ++d i+glp ++ e +  +l
   EHT98699.1 154 EMIDHLRTCGFNRLSMGVQDFNKT-VQERVNRVQDEDVIFALMARAREQGFRStSIDLIYGLPLQTAESFAFTL 226
                  ***********************9.*****************************************99887665 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.8e-12   1.1e-08       1      66 []     363     431 ..     363     431 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.8e-12
      HemN_C   1 lspedrleEeiilgLRlreGldlaafeqrfgld....leellaaaleklqeqGLLeldggrlrltprGrl 66 
                 ls++d l++ +i  L++++ ld++a e++ +++    ++e+la  l++l+++GL+++++++l++t  Grl
  EHT98699.1 363 LSQDDCLRRDVIKTLICNFALDFSATETQWNITfdsyFAEELAR-LKPLIADGLVVQNATGLKVTGTGRL 431
                 799******************************99*99999777.***********************96 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.069      83     140 ..     109     167 ..      86     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
                     EEEESSHHHCTTTCHHHHHHHHH.HHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEE CS
  Acetyltransf_8  83 Hlligeaeargkglttallralv.hylfadprtrrvvvEPdvrNerairllekaGfeke 140
                     H   g +++++k+ +++l+  l  h+ f+d++ +++ v+P+    ++i +l+ +Gf++ 
      EHT98699.1 109 HWGGGTPTFLNKQQVSRLVALLKqHFTFEDDAEMSIEVDPREIELEMIDHLRTCGFNRL 167
                     556688999999999999999876999*****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3580.69
//
Query:       EHT98700.1  [L=469]
Description: nitrogen regulation protein NR(I) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-70  234.5   0.0      8e-70  233.9   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    7.1e-31  106.7   0.0    1.3e-30  105.8   0.0    1.5  1  Response_reg     Response regulator receiver domain
    4.9e-23   81.8   0.0    3.1e-22   79.2   0.0    2.2  1  Sigma54_activ_2  Sigma-54 interaction domain
    5.9e-16   58.0   3.2      2e-15   56.3   1.5    2.4  2  HTH_8            Bacterial regulatory protein, Fis family
    1.7e-07   31.4   0.0    3.8e-07   30.2   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
      2e-05   24.8   0.0    3.5e-05   24.0   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00081   19.8   0.0     0.0028   18.1   0.0    1.9  2  AAA              ATPase family associated with various cellul
     0.0073   15.7   0.1       0.77    9.1   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.041   14.3   0.0    1.8  1  FleQ             Flagellar regulatory protein FleQ
      0.053   13.0   0.0        0.1   12.1   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
        0.1   13.0   0.9       0.29   11.5   0.0    2.2  2  AAA_16           AAA ATPase domain
       0.13   11.3   0.0       0.33   10.0   0.0    1.6  1  MCM              MCM P-loop domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9   0.0   5.3e-73     8e-70       1     167 [.     140     306 ..     140     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 233.9 bits;  conditional E-value: 5.3e-73
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ige +a++++++ i ++ ++++svli+GesGtGKel+a+a+h++s+r+++pf+a+n+aaip++l+eseLFGhekGaFtGA++ ++G+fe+adg
       EHT98700.1 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRSKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQIRQGRFEQADG 233
                      799******************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      GtlfLDeig++pl++Q++Llrvl +g+++rvG+ +++kvdvriiaat+++le  v+egkfredL++rlnvi++
       EHT98700.1 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLNVIRV 306
                      **********************************************************************987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   8.8e-34   1.3e-30       1     111 [.       6     115 ..       6     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 8.8e-34
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   v ivdDd  +r +l+++l+ +g+ ++a++++++++l+ l ++++d++l Di+mpgmdGl llk+i++++p lpvii+tahs+ + av a++ ga+d+
    EHT98700.1   6 VWIVDDDSSIRWVLERALTGAGL-SCATFDSANDVLNALATKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY 101
                   68*********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kpfd++e ++ +
    EHT98700.1 102 LPKPFDIDEAVALV 115
                   *******9987765 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   2.1e-25   3.1e-22       1     138 []     141     311 ..     141     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 2.1e-25
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakgg 71 
                      +g+++a+q+ ++ +  +++s+  v++ Ge G+gkelvA +Lh  s +  ++f+  + a++p                       +  +eqa+gg
       EHT98700.1 141 IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRSKAPFIALNMAAIPkdlieselfghekgaftganqirQGRFEQADGG 234
                      6999********************************************************9777777777777777777777777777779*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      tL+l +i d++ + q++Ll +la             k ++r+++++ ++le  +++g+f e L+ +L  +r+h+PpL
       EHT98700.1 235 TLFLDEIGDMPLDVQTRLLRVLADgqfyrvggyaPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLNVIRVHLPPL 311
                      ********************************963399**************************************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.38   5.7e+02      24      31 ..     329     336 ..     322     341 .. 0.83
   2 !   56.3   1.5   1.3e-18     2e-15       3      42 .]     427     466 ..     425     466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
                 HHHHHTS- CS
       HTH_8  24 AArlLGis 31 
                 AAr+LG+ 
  EHT98700.1 329 AARELGVE 336
                 9*****86 PP

  == domain 2  score: 56.3 bits;  conditional E-value: 1.3e-18
                 HHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   3 eevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 +e+E+ l++ AL++t+G+k++AArlLG++R+tL+rKLk++
  EHT98700.1 427 PEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466
                 799***********************************95 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.5e-10   3.8e-07       2     123 ..     164     283 ..     163     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.5e-10
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerrll 95 
                 vl+ G++GtgK  +a  l +   +++   ++l+    ++dl+ +  +  ++ +++     r++r     g +l+lDE+  ++ +v+ +Ll++l + +++
  EHT98700.1 164 VLINGESGTGKELVAHALHRHSpRSKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQIRQGRfeqaDGGTLFLDEIGDMPLDVQTRLLRVLADGQFY 262
                 899*****************998667677777777777777777777777778888888888889999******************************* PP

                 ..-SSSEEE---......-EEEEEESS- CS
       AAA_5  96 leeggelvkaknddllerfrviatanpl 123
                     g++  +k d     +r+ia+++++
  EHT98700.1 263 --RVGGYAPVKVD-----VRIIAATHQN 283
                 ..66666666655.....99**999876 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.3e-08   3.5e-05       2     123 ..     160     277 ..     159     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.3e-08
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHH...TTT-HHHHTTSEEEEETGGG-------------H CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrliga...ppgyvgaeegGivllDEidKihpkessgadvSre 93 
                 + is+l+ g++g+Gk+++a al ++   +++ ++i +++ ++ +    +e   h    ++ga   ++g  ++++gG ++lDEi                
  EHT98700.1 160 SSISVLINGESGTGKELVAHALHRHSP-RSKAPFIALNMAAIPKdlieSELFGHEKGAFTGAnqiRQGRFEQADGGTLFLDEIGDMPL----------- 246
                 5689***********************.9**********9988855544444443333343311155666677888************........... PP

                 HHHHHHHHHHH--EE-----.--EE-TT-EE CS
       AAA_2  94 gVqrdLLqileggtltdkqg.rkvdtknilf 123
                 +Vq+ LL++l +g+     g  +v+ +  ++
  EHT98700.1 247 DVQTRLLRVLADGQFYRVGGyAPVKVDVRII 277
                 *************998888877777765554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       8.4   1.3e+04      89     112 ..      65      85 ..      63      92 .. 0.59
   2 !   18.1   0.0   1.9e-06    0.0028       1     111 [.     164     282 ..     164     301 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8.4
                 HHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  89 Llteldgvkkkeskvivigatnrp 112
                 Ll+++++       + vi++t + 
  EHT98700.1  65 LLKQIKQRHP---MLPVIIMTAHS 85 
                 5555555555...56677777654 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.9e-06
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvn 87 
                 vl+ G  GtGK l+a+a+ +++   +++f+ ++++ + ++     ++g+ +  + +  + +++ +    +   lf+DEi  +  +            + 
  EHT98700.1 164 VLINGESGTGKELVAHALHRHSprsKAPFIALNMAAIPKDlieseLFGHEKGAFTGANQ-IRQGRfeqaDGGTLFLDEIGDMPLDV-----------QT 250
                 6899*****************655589******99988556666644544444444332.2333344434489********95555...........88 PP

                 HHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  88 qLlteldgvkkk........eskvivigatnr 111
                  Ll++l + + +        + +v +i+at++
  EHT98700.1 251 RLLRVLADGQFYrvggyapvKVDVRIIAATHQ 282
                 88888888888888888888777888888886 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        26      24      47 ..     163     186 ..     158     201 .. 0.86
   2 !    9.1   0.0   0.00052      0.77      93     130 ..     219     256 ..     211     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllp 47 
                   ++l+ G +G+GK ++a++l+   p
    EHT98700.1 163 SVLINGESGTGKELVAHALHRHSP 186
                   6899*************9987555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00052
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePl 130
                   g ++++ G    a  G LfLDE+ ++  +v   L + l
    EHT98700.1 219 GANQIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVL 256
                   77899*******************99998887765555 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.8e-05     0.041       2      81 ..       6      87 ..       5     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.8e-05
        FleQ  2 iLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs..sleealealaekdphlPvlllgesdea 81
                + ++ddd++ r+ le  L+  g ++ +++s++   ++  ++   +++    +      ++l+++ +++p lPv++++ +++ 
  EHT98700.1  6 VWIVDDDSSIRWVLERALTGAGLSCATFDSANDVLNALATKTPDVLLSDIRMPgmDGLALLKQIKQRHPMLPVIIMTAHSDL 87
                689*****************************977777777777777777777678899*****************999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     7e-05       0.1      26      71 ..     154     199 ..     137     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                 +  l +++ +vl+ G++GtGK ++++ l ++ +++k  ++ +n+ a
  EHT98700.1 154 IGRLSRSSISVLINGESGTGKELVAHALHRHSPRSKAPFIALNMAA 199
                 667889999************************9999999998876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.29      12      56 ..     150     193 ..     142     259 .. 0.81
   2 ?   -1.3   0.4       1.6   2.4e+03     144     144 ..     407     407 ..     310     452 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggifl 56 
                 + ++++r+++++  +vl+ GesG+GK  ++ +l+r+  ++++ f+
  EHT98700.1 150 VFRIIGRLSRSS-ISVLINGESGTGKELVAHALHRHSPRSKAPFI 193
                 556667777777.59*******************99988865554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
      AAA_16 144 l 144
                 +
  EHT98700.1 407 A 407
                 2 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022      0.33      54     145 ..     158     256 ..     150     281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00022
                 BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE..EEESS.SSSSSHSSSEE....EEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHH CS
         MCM  54 lrgdinvllvgdpgtaKsqlLkyveklaprav..ytsgk.gssaagLtaav....vrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEam 145
                  r++i vl+ g++gt+K  + +++++ +pr+   ++  + ++   +L  +      +   tg   +  G    ad+G + +De+  m  + ++ l+ ++
  EHT98700.1 158 SRSSISVLINGESGTGKELVAHALHRHSPRSKapFIALNmAAIPKDLIESElfghEKGAFTGANQIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVL 256
                 599*************************9987223333313444567555411114455566678999*****************99999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3559.30
//
Query:       EHT98701.1  [L=349]
Description: sensory histidine kinase in two-component regulatory system with GlnG [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-17   62.2   0.0    1.3e-16   61.1   0.0    1.6  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    6.4e-14   51.8   0.1    6.4e-14   51.8   0.1    2.6  4  HisKA        His Kinase A (phospho-acceptor) domain
      5e-07   29.7   0.0    1.3e-06   28.4   0.0    1.6  1  PAS          PAS fold
      4e-05   23.8   0.0    9.1e-05   22.7   0.0    1.7  1  PAS_4        PAS fold
    0.00013   21.9   0.0    0.00048   20.1   0.0    2.0  2  PAS_8        PAS domain
    0.00048   20.4   0.0      0.001   19.3   0.0    1.5  1  PAS_9        PAS domain
  ------ inclusion threshold ------
      0.016   14.0   0.2      0.023   13.4   0.2    1.1  1  DUF1688      Protein of unknown function (DUF1688)
      0.045   13.6   0.0      0.073   12.9   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   5.7e-20   1.3e-16       2     110 ..     234     347 ..     233     349 .] 0.80

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 5.7e-20
                 HHHHHHHHHHHHHHHHHHHHS.TTTEEEEEEEE......EE....TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfat.kageieveika......se....ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmg 89 
                 d+++++q++ n+v Na+++ + ++g+i ++ ++      +        +i +eD+G+Gip + ++ lf ++++      + ggtGlGlsi+++l++++ 
  EHT98701.1 234 DPDQIEQVLLNVVRNALQALGeDGGTIVIRTRTafqltlHGtryrLVARIDIEDDGPGIPAQLQDTLFYPMVS-----GREGGTGLGLSIARSLIDQHS 327
                 8999**************933466666665554554444114455577889******************9999.....5679**************9** PP

                 TEEEEEEETTTEEEEEEEEES CS
   HATPase_c  90 GeiwvesepgrGttftftlpl 110
                 G+i+++s p + t+f ++lp 
  EHT98701.1 328 GKIEFNSWP-GHTEFSVYLPI 347
                 *****8888.7888*999986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       6.1   1.4e+04      51      59 ..      13      21 ..       8      23 .. 0.55
   2 !   51.8   0.1   2.8e-17   6.4e-14       3      59 ..     131     186 ..     129     193 .. 0.93
   3 ?   -2.3   0.0       2.1   4.6e+03      40      56 ..     195     211 ..     187     212 .. 0.82
   4 ?   -2.3   0.0       2.1   4.7e+03      17      30 ..     243     256 ..     243     273 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.1
                HHHHHHHHH CS
       HisKA 51 ldhlvedlL 59
                l+ l++ +L
  EHT98701.1 13 LNTLINSIL 21
                455555554 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 2.8e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlL 59 
                 ++++ g+aHE+++PL +++g+a++L+r    ++ l ey ++i+++a+rl++lv++lL
  EHT98701.1 131 RDLVRGLAHEIKNPLGGLRGAAQLLSRA-LPDPALNEYTKVIIEQADRLRNLVDRLL 186
                 79***********************995.7789**********************98 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHH CS
       HisKA  40 yletiesearrldhlve 56 
                   ++i++ a+r+ +lv+
  EHT98701.1 195 ITQSIHQVAERVVNLVS 211
                 56789999999999985 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHC. CS
       HisKA  17 LsailgnaeaLkre 30 
                 L++++ +++aL ++
  EHT98701.1 243 LNVVRNALQALGED 256
                 78999999999664 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.8e-10   1.3e-06       5      94 ..      11      97 ..      10     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.8e-10
                HHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEE CS
         PAS  5 aileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevras 94
                +il++l++ i++vD d  i y+N+aa++ll  s   + g +l +l    + +  +e +++ le+g+ +++ e+++ + dgr   + ++a 
  EHT98701.1 11 QILNTLINSILLVDTDLAIHYANPAAQQLLAQSSRKLFGTPLPELTG--YFSLNVEFMRESLEAGQGFTDSEVTLVV-DGRAHIMSLTAQ 97
                69*****************************************8874..4567************************.***998888876 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.1e-08   9.1e-05       6      90 ..      18     101 ..      13     130 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.1e-08
       PAS_4   6 dalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.pgeerhyelrllPlrd 90 
                   ++ +d+d+ + yaN+aa++l++ +   l G +l el          + +r+ le ++  ++ e++l  +g+ ++++l++ +l d
  EHT98701.1  18 NSILLVDTDLAIHYANPAAQQLLAQSSRKLFGTPLPELTG--YFSLNVEFMRESLEAGQGFTDSEVTLVvDGRAHIMSLTAQRLPD 101
                 678999*******************************743..67777777788888888888888777778999999998887744 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.2e-07   0.00048       6      59 ..      12      66 ..      10      74 .. 0.83
   2 ?   -3.5   0.0       5.4   1.2e+04      11      18 ..     100     107 ..      99     117 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.2e-07
       PAS_8  6 lfesspdgiavvdlgdrivdvNqaalellGysadlkgellgqllpvlrplle....da 59
                +++++ ++i++vd++  i ++N+aa++ll   a+++++l+g+ lp+l++++     ++
  EHT98701.1 12 ILNTLINSILLVDTDLAIHYANPAAQQLL---AQSSRKLFGTPLPELTGYFSlnveFM 66
                77888899*****8889************...89*******99999999987544444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.4
       PAS_8  11 pdgiavvd 18 
                 pdg++++ 
  EHT98701.1 100 PDGLILLE 107
                 99999853 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.5e-07     0.001       2      72 ..      18      87 ..      17     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.5e-07
       PAS_9  2 dgilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkn 72
                ++il++++d  i yaN+aa +ll +s++ + g+++ +l    + + e++r+ le+g+  + + ev+l+ + 
  EHT98701.1 18 NSILLVDTDLAIHYANPAAQQLLAQSSRKLFGTPLPELTGYFSLNVEFMRESLEAGQ-GFTDSEVTLVVDG 87
                6899999***888**************************888999999999999999.4444455444443 PP

>> DUF1688  Protein of unknown function (DUF1688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2     1e-05     0.023     152     230 ..     121     200 ..     108     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
     DUF1688 152 daegLkkltaeklakalqvseenplvGlegRaelLkr.L.gealeekpevfgee.grpgnlvdyllskakekasskkevele 230
                 + ++ +++ a++l ++l  + +npl Gl g a+lL+r L   al+e ++v+ e+  r  nlvd ll  ++     + + +++
  EHT98701.1 121 QLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSRaLpDPALNEYTKVIIEQaDRLRNLVDRLLGPQQP--GMHITQSIH 200
                 44555788999************************88353358988888875555**********955532..222222233 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.3e-05     0.073       4      48 ..     239     295 ..     236     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
  HATPase_c_3   4 ekAlaelvdNsldAdaen...........vkievnknr.gktgeivieDdGkGmsee 48 
                  e++l+ +v+N+l+A  e             +++++  r   +++i ieDdG G++ +
   EHT98701.1 239 EQVLLNVVRNALQALGEDggtivirtrtaFQLTLHGTRyRLVARIDIEDDGPGIPAQ 295
                  789***********9999999888888876666665554457************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2882.27
//
Query:       EHT98702.1  [L=469]
Description: glutamine synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.5e-138  460.3   0.0   4.2e-138  460.1   0.0    1.1  1  Gln-synt_C  Glutamine synthetase, catalytic domain
    3.8e-32  109.9   0.2      7e-32  109.0   0.2    1.5  1  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.1   0.0  4.7e-142  4.2e-138       2     345 .]     103     466 ..     102     466 .. 0.98

  Alignments for each domain:
  == domain 1  score: 460.1 bits;  conditional E-value: 4.7e-142
                 T-HHHHHHHHHHHHHHTTC..EEEEEEEEEEEEESEECCCE.SSEEEEEEE.T..............B...B.TSS-TTBHCCCCCTCCHHHHHHHHHH CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGl..tvvvgpElEFflfdkeedke.asksllevdse..............ekgrpaekggyfsvapvdeaedlrreiveale 83 
                 rdPRs++kra+++l+++G+  tv++gpE+EFflfd+ ++++ +s+s +++d+               +++rp  kggyf+v+pvd+ +d+r+ ++ ++e
  EHT98702.1 103 RDPRSIAKRAEDYLRSSGIadTVLFGPEPEFFLFDDIRFGSsTSGSHVAIDDIeaawntgkeyeggnKGHRPGLKGGYFPVPPVDSSQDIRSAMCLTME 201
                 8**************************************998888888888889*************9******************************* PP

                 HTT--EECCEEECCCT.EEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGG.B-HHHHH CS
  Gln-synt_C  84 algieveashhEvatg.QvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeya.lselarh 180
                 ++g+ vea+hhEvat+ Q+E+ ++f+++ k+aD+++++K+vv++vA+++g+tatFmpKp++gdnGsgmH+h+Sl+ k g+nlf++++  y+ lse+a+ 
  EHT98702.1 202 QMGLVVEAHHHEVATAgQNEVATRFNTMTKKADEIQIYKYVVHNVAHAYGKTATFMPKPMFGDNGSGMHCHMSLS-KGGQNLFSGDK--YGgLSETALF 297
                 ***************99**********************************************************.**********9..555******* PP

                 HHHHHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-.TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S- CS
  Gln-synt_C 181 figGllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipa.skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekd 278
                 +igG++khaka++al++pt+nSYkRlvpgyeaPv+la++arNRsa++Rip  +++ka+r+E R+pd++aNPYLa++all+AgldGi nk++pg++++k+
  EHT98702.1 298 YIGGIIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVvASPKARRIEARFPDPAANPYLAFTALLMAGLDGIINKIHPGDAMDKN 396
                 *************************************************************************************************** PP

                 SSSS-TTTHTSS-B--SSHHHHHHHHHCS.HHHCC..SS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 279 lyelspeerkgieelPasleeAlealeed.ellke..vlgeevieaylalkraEleeleeevsdwelery 345
                 ly+l+pee+++i++++ sleeAl+al+ed e+l++  v++++ i+ay++l+++E ++++++++++e+e y
  EHT98702.1 397 LYDLPPEEEAEIPKVAGSLEEALNALNEDrEFLTRggVFTDDAIDAYIELRKSENDRVRMTPHPVEFELY 466
                 **********************************99*******************************987 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.2   7.8e-36     7e-32       1      83 []      14      95 ..      14      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 7.8e-36
                T--EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE-T CS
  Gln-synt_N  1 evkfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvydp 83
                evkfvdl+FtD+kgk +hvtipa+++++d++eeg +FDGSsi g+++i+eSDm+L+Pd++tav+dPf e++ t+++ cd+++p
  EHT98702.1 14 EVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDATTAVMDPFFEDS-TLIIRCDILEP 95
                59*********************************************************************.********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3290.19
//
Query:       EHT98703.1  [L=607]
Description: GTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-58  197.0   0.1    3.5e-58  196.3   0.1    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.7e-21   74.1   0.0    1.9e-20   72.7   0.0    1.8  1  EFG_C        Elongation factor G C-terminus
      1e-11   45.0   3.1    2.7e-11   43.7   3.1    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    4.1e-07   30.1   0.6    2.3e-06   27.7   0.1    2.3  2  MMR_HSR1     50S ribosome-binding GTPase
    2.9e-05   24.1   1.5      9e-05   22.5   0.1    2.5  3  EFG_II       Elongation Factor G, domain II
     0.0011   18.3   0.1     0.0018   17.6   0.1    1.2  1  Septin       Septin
      0.007   15.9   0.1       0.15   11.6   0.0    3.1  2  FeoB_N       Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.019   15.0   0.1       0.31   11.1   0.0    2.5  2  Dynamin_N    Dynamin family
       0.04   14.1   0.0      0.071   13.3   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.06   12.8   0.0       0.14   11.5   0.0    1.6  1  SRPRB        Signal recognition particle receptor beta subuni
       0.18   11.6   0.0       0.42   10.4   0.0    1.6  1  NAGLU_N      Alpha-N-acetylglucosaminidase (NAGLU) N-terminal


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.1   2.2e-61   3.5e-58       2     192 ..       4     194 ..       3     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 2.2e-61
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                 ++rni+ii+hvDhGKtTL+d+Ll+++g+ + ++e +  erv+D+++ E+ergiTi ++++ ++  +++y+in++DtPGH+dF  ev+r ++++D ++lv
  EHT98703.1   4 NLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARTEAT--ERVMDSNDLEKERGITILAKNTAIK--WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLV 98 
                 79*****************************77766..599**********************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB..........THHHHHHHHH CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge..........gvktllealv 189
                 vda++G++pqt+ v + a ++g+++iv+iNK+Dr++a+ +++v++v + +      ++  +++++ ++p++f+Sal+g            +++l +a+v
  EHT98703.1  99 VDAMDGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLF------VNLDATDEQLDFPIIFASALNGIagldhtdmadDMTPLYQAIV 191
                 ***********************************************999......66666666679************88888888888889999999 PP

                 HHS CS
    GTP_EFTU 190 ell 192
                 +++
  EHT98703.1 192 DHV 194
                 887 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.2e-23   1.9e-20       3      82 ..     397     476 ..     395     482 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 1.2e-23
                 EEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE-- CS
       EFG_C   3 lEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevp 82 
                  EP+++v+++++e ++g v++ + +r+G +++m++d++grv++ + iP+++ligf++e+ ++T+G+g + ++fs+Y+ ++
  EHT98703.1 397 QEPFENVTLDIEETHQGSVMQAMGERKGDLKNMDPDGKGRVRLDYVIPSRGLIGFRNEFMTMTSGTGLLYSTFSHYDDIR 476
                 7***************************************************************************9875 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   3.1   1.7e-14   2.7e-11       1      74 []     219     289 ..     219     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.7e-14
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G++  gr+ +G++k++++v i  +d+++k   +++++++t+ + e+++ + a aG+i+ai gl + + ++dt++
   EHT98703.1 219 GVIGIGRIKRGKVKPNQQVTI--VDSEGKTRNGKVGKVLTHLGLERIDSDLAEAGDIIAITGLGE-LNISDTIC 289
                  67889****************..999888999*********************************.9*****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   1.4e-09   2.3e-06       2     114 .]       8     129 ..       7     129 .. 0.74
   2 ?   -0.7   0.0       0.9   1.5e+03      37      57 ..     227     246 ..     224     278 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.4e-09
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvv 83 
                 +ai+ +   GK+tL+ +l++                +    +++ g T+  +   +k+++ +i++vDtpG         ++g +++++ + +d +llvv
  EHT98703.1   8 IAIIAHVDHGKTTLVDKLLQqsgtfdarteatervmDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG-H------ADFGGEVERVMSmVDSVLLVV 99 
                 89999999***********76667776666654332345778888999999999999*************.3......346666666666479****** PP

                 ETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  84 daseeklkpldeeleelleeakkplilvlnk 114
                 da  ++  p+ + + +    ++ + i+v+nk
  EHT98703.1 100 DAM-DGPMPQTRFVTKKAFAHGLKPIVVINK 129
                 *88.556677677766655555566777776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.9
                 EEEEEEETTEEEEEEECGGCS CS
    MMR_HSR1  37 negrvklkgkeielvDtpGli 57 
                 ++g+vk + +++++vD  G  
  EHT98703.1 227 KRGKVKPN-QQVTIVDSEGKT 246
                 66778744.699999999932 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         3   4.9e+03      23      43 ..     295     315 ..     294     318 .. 0.86
   2 !   22.5   0.1   5.5e-08     9e-05      20      66 ..     330     376 ..     324     384 .. 0.88
   3 ?   -2.0   0.1       2.5     4e+03      41      53 ..     408     421 ..     401     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
      EFG_II  23 kaLarlleEDptlrverdeeT 43 
                 +aL  l+ ++pt+++ ++ +T
  EHT98703.1 295 QALPALSVDEPTVTMFFNVNT 315
                 6888999999****9999988 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5.5e-08
      EFG_II  20 klskaLarlleEDptlrverdeeTketilsGmGelHleivverlkre 66 
                 ++ + L++ l     lrve  e+   + +sG GelHl +++e+++re
  EHT98703.1 330 QILERLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE 376
                 66778888888999*******************************98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.5
      EFG_II  41 eeTke.tilsGmGe 53 
                 eeT++  ++++mGe
  EHT98703.1 408 EETHQgSVMQAMGE 421
                 68888568999*99 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.1e-06    0.0018       7      75 ..       8      81 ..       5     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                EEEEEBTTSSCCCCCCTTSSSS----.......--------------S-EEEEEEEEETTCEEEEEEEE---BSSS CS
      Septin  7 lmvvGesglGkttlintlfetdliee.......ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGda 75
                + ++ +   Gkttl++ l++++ + +       + ++++  +k++ ++i +k++ i+ ++   +++++Dtpg+ d+
  EHT98703.1  8 IAIIAHVDHGKTTLVDKLLQQSGTFDarteateRVMDSNDLEKERGITILAKNTAIKWND--YRINIVDTPGHADF 81
                667788899**********99877665666654434444447777777778888887774..56899*****8776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.3e-05      0.15      32     118 ..      53     133 ..       6     176 .. 0.75
   2 ?   -1.2   0.0       0.8   1.3e+03     103     150 ..     304     351 ..     288     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.3e-05
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHHHHHHHHHHHTTSSEEEEEETHHHH CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn..lernLyLtlqllelgvpvvlalnmidea 118
                 G+t+  k++++k+++++++ivD PG  ++    e e+v   +   + +d v+ vvda+   + ++ ++t + +  g++ ++++n++d  
  EHT98703.1  53 GITILAKNTAIKWNDYRINIVDTPGHADFGG--EVERV---M---SMVDSVLLVVDAMDgpMPQTRFVTKKAFAHGLKPIVVINKVDRP 133
                 99***********************877653..22333...2...23566777777764336777788999999999999999999864 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.8
                 HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHH CS
      FeoB_N 103 elgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegie 150
                 e +v +   +n++    k+g  +  +++ e+L+ + v+ +a + e++e
  EHT98703.1 304 EPTVTMFFNVNTSPFCGKEGKYVTSRQILERLNKELVHNVALRVEETE 351
                 5566778889999999999999999999999*9999999999887766 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.31      64     167 ..      31     129 ..      14     130 .. 0.74
   2 ?   -3.2   0.0       4.7   7.7e+03     100     114 ..     234     248 ..     231     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                 -CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEE CS
   Dynamin_N  64 dfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrti 162
                  f++ +e+ e+ ++ ++ ++++  +++ + +  ++++ ++++vD+PG  +   +    v++ +   d +l+v++a    +  + +f+ +++  +g + i
  EHT98703.1  31 TFDARTEATERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE----VERVMSMVDSVLLVVDAMDGPM-PQTRFVTKKAFAHGLKPI 124
                 45555555555555555555666666778888999************9995544....6889999999999999988555.678899999999999999 PP

                 EEEE- CS
   Dynamin_N 163 vvltk 167
                 vv++k
  EHT98703.1 125 VVINK 129
                 99998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.7
                 S-SEEEEE---B-SS CS
   Dynamin_N 100 vkgltlvDlPGldsv 114
                 ++++t+vD+ G +++
  EHT98703.1 234 NQQVTIVDSEGKTRN 248
                 578999999887775 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.3e-05     0.071       6     119 ..      12     131 ..       7     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
                 SSTTSSHHHHHHCHCT..-CCC-EEETTTTE....EEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHH CS
         Roc   6 GdsgvGKtsllkrfve..dkfsekekstigv....dfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeW 98 
                      GKt+l++++++  ++f+ ++++t  v    d+ +++  +i   ++  k +++++ni Dt G+ +f    +  ++  + ++lv+d+ +    ++ 
  EHT98703.1  12 AHVDHGKTTLVDKLLQqsGTFDARTEATERVmdsnDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAMDGPMPQTR 110
                 55678*********98446898888887655111133333333444444555677899**************999999999999****99888777777 PP

                 HHHHHHHCSSS-EEEEEE-TT CS
         Roc  99 lkelkkvagkspvilvgnkiD 119
                 +   k+ a+  + i+v+nk+D
  EHT98703.1 111 FVTKKAFAHGLKPIVVINKVD 131
                 777788888888899999998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.9e-05      0.14       4      84 ..       6     100 ..       3     113 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.9e-05
                 -EEEEE-STTSSHHHHHHHHHHS....................S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEE CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd....................svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfv 82 
                 +++ ++   d GKT+l  +L+++                    ++++  t +++++a k    ++ +++++D PGh  +  ++       s + +++ v
  EHT98703.1   6 RNIAIIAHVDHGKTTLVDKLLQQsgtfdarteatervmdsndlEKERGITILAKNTAIKW---NDYRINIVDTPGHADFGGEVERV---MSMVDSVLLV 98 
                 567788899************999999997755444444443333333333344444444...78999*********999887665...4455555666 PP

                 EE CS
       SRPRB  83 vD 84 
                 vD
  EHT98703.1  99 VD 100
                 65 PP

>> NAGLU_N  Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.42       4      43 ..     329     370 ..     327     374 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                 HHHHHHHH-GGGGGEEEEE.--BTTB-EEEEE-SSS...-EEE CS
     NAGLU_N   4 relleRllpehaskfkfelveeksgkdvFeisskgg...kilI 43 
                 r++leRl +e ++++ +++ ee+++ d F++s +g+    +lI
  EHT98703.1 329 RQILERLNKELVHNVALRV-EETEDADAFRVSGRGElhlSVLI 370
                 789****************.68**********99876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4488.79
//
Query:       EHT98704.1  [L=198]
Description: phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-10   40.7   0.0    3.4e-10   40.3   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.8e-07   31.1   0.0    5.2e-06   26.9   0.0    2.0  2  Hydrolase       haloacid dehalogenase-like hydrolase
    7.9e-06   25.9   0.1    2.4e-05   24.3   0.0    1.8  2  Hydrolase_like  HAD-hyrolase-like
    0.00036   20.4   0.0    0.00067   19.5   0.0    1.6  1  Acid_PPase      Acid Phosphatase
      0.004   17.4   0.0     0.0071   16.6   0.0    1.4  1  PerC            PerC transcriptional activator
     0.0078   16.6   0.1      0.016   15.6   0.1    1.7  1  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.17   11.7   0.9       0.24   11.2   0.2    1.6  2  SHOCT           Short C-terminal domain


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.3e-13   3.4e-10      60     178 .]      64     184 ..       3     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.3e-13
       HAD_2  60 e.kieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleql.giesyFdvivtsedvekkKPdpeviekaleklklkkeevi 156
                 +  i+  ++++ +  +  +v + ++   l+++L++ag+++ i ++ ++   +   +q  ++++  d+i+ s++ + +KP++++++ +l+  ++++++++
  EHT98704.1  64 KlEIALSYEQFAAGWQAIFVGVRPDTLALMNQLRQAGHRVVILSNTNALHCTFWPTQYpDVQQAADKIYLSQELGMRKPEARIYQHVLDAEGFSADQAV 162
                 344444445555555556777999*********************9988777665554289************************************** PP

       HAD_2 157 yvGDsptDieaakkagikviav 178
                 ++ D+   ie+a+++gi+++ v
  EHT98704.1 163 FFDDNAANIEGARALGITSVLV 184
                 *****************99875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.059   1.5e+02       4      46 ..       3      61 ..       1      84 [. 0.58
   2 !   26.9   0.0     2e-09   5.2e-06     119     210 .]      85     178 ..      73     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.059
                EEEESBTTTBCHH.HHHHHHHHHH..........CHHHHHHHHHH.....HHCHHHHHH CS
                xxxxxxxxxxxxx.xxxxxxxxxx..........xxxxxxxxxxx.....xxxxxxxxx RF
   Hydrolase  4 vvfDkdGTLttge.psvedvivsa..........alalaaaletg.....sehpigkal 46
                 +fD+ +++++   ++v  v+  +            ++ aa+e       s+  +++al
  EHT98704.1  3 YIFDLGNVIIDIDfNRVLGVWSDLsrvplaslqsHFQMDAAFEQHergeiSDEAFAEAL 61
                68********99999******99965554433332222222222233333333333333 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 2e-09
                 BHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 119 vkpeaaeavasLkaagievvlltgdnpetaeraanq.lG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 v+p++  ++++L++ag +vv+l++ n  +      q  + +++ d ++ s + +  kp+ ++++++++  + +  + ++++D++  +++++a g
  EHT98704.1  85 VRPDTLALMNQLRQAGHRVVILSNTNALHCTFWPTQyPDvQQAADKIYLSQELGMRKPEARIYQHVLDAEGFSADQAVFFDDNAANIEGARALG 178
                 89*************************777755555244666668999999999************************************9976 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   5.1e+03      41      48 ..      76      83 ..      75      87 .. 0.86
   2 !   24.3   0.0   9.5e-09   2.4e-05       2      53 ..     139     189 ..     138     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
                    CT-EEEEE CS
  Hydrolase_like 41 aGwksvLV 48
                    aGw+ ++V
      EHT98704.1 76 AGWQAIFV 83
                    9****998 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 9.5e-09
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvt 53 
                     ++KPe+ +y   l + g   ++ ++  D+ a+ i+gA++ G++svLV+  +t
      EHT98704.1 139 MRKPEARIYQHVLDAEGFSADQAVFFDDN-AANIEGARALGITSVLVTDSKT 189
                     69***************************.*****************98766 PP

>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.6e-07   0.00067     109     155 ..     143     189 ..      83     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS-- CS
  Acid_PPase 109 ktkhfeklkkktgieyedmlfFDdesrnievesrlgvtfvlvpdGlt 155
                  ++ ++++  + g + ++ +fFDd++ nie  + lg+t+vlv+d  t
  EHT98704.1 143 EARIYQHVLDAEGFSADQAVFFDDNAANIEGARALGITSVLVTDSKT 189
                 45567788889999****************************98655 PP

>> PerC  PerC transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-06    0.0071       6      86 ..      61     149 ..      57     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
        PerC   6 vaekLeakGlyRRaadRWaevmvlletdaeRklvalk....RaeClrk..asrpplpalnlseikkavdrty..kelGlatvseevfRk 86 
                 + ekLe +  y   a+ W  + v +  d    +  l+    R   l +  a +    + ++ ++++a+d++y  +elG+  ++ +++ +
  EHT98704.1  61 LCEKLEIALSYEQFAAGWQAIFVGVRPDTLALMNQLRqaghRVVILSNtnALHCTFWPTQYPDVQQAADKIYlsQELGMRKPEARIYQH 149
                 6799999999*************999776544333331111444444401444455599***********996679**********986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.1e-06     0.016      53     111 ..      57     110 ..      12     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.1e-06
         HAD  53 glaelleallagls.eelaaelerfvaevirpkl.ldpgalellaahraaGdrvvvvSggl 111
                  +++l e+l  +ls e++aa  ++++       +  +p+ l+l+++ r+aG+rvv++S+++
  EHT98704.1  57 FAEALCEKLEIALSyEQFAAGWQAIF-------VgVRPDTLALMNQLRQAGHRVVILSNTN 110
                 33333333333444466666666666.......3478*********************875 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   9.3e-05      0.24       8      23 ..      45      60 ..      39      63 .. 0.83
   2 ?   -3.3   0.0       3.3   8.4e+03       3      13 ..      90     100 ..      88     100 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.3e-05
       SHOCT  8 eLyarGeIteEEFeak 23
                e ++rGeI++E F ++
  EHT98704.1 45 EQHERGEISDEAFAEA 60
                899********99987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.3
       SHOCT   3 LekLkeLyarG 13 
                 L+   +L+++G
  EHT98704.1  90 LALMNQLRQAG 100
                 66667888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1488.87
//
Query:       EHT98705.1  [L=289]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-56  191.1  27.0    3.1e-56  190.8  27.0    1.1  1  Virul_fac_BrkB  Virulence factor BrkB
  ------ inclusion threshold ------
      0.087   12.8   0.1       0.27   11.2   0.1    2.0  1  UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8  27.0   3.5e-60   3.1e-56       3     256 ..      27     273 ..      25     275 .. 0.91

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 3.5e-60
  Virul_fac_BrkB   3 ddlsllAaalayytllSlfPlllvllavlgllglddelqeqlldllaev.lpegaaevvedilqrllnqa.slgllglavllwsasggvsalrra 95 
                     d +++ A+ la+ +ll+l+Pl++v++a++++++++++++ ql +++  + +p+ a ++++ +l++++ +  + +++g ++l+++a+ ++ ++++a
      EHT98705.1  27 DAMTTQAGNLAFVSLLALVPLIAVVFALFAAFPVFSDISVQLKNFIFANfMPA-AGNTLQRYLEQFVANVhRMTAVGAVGLIVTALLLMHSVDSA 120
                     778999***********************9977799*********88884775.99*******76665555************************ PP

  Virul_fac_BrkB  96 lnkiygveesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsellllqllrwlvallllvlafallYrvlpnvkvrlr 190
                     ln+i++ +++r+++ ++++++++l+l+++l ++sl++s++l s l+    +++++  ++ l + q+lr+ ++lll +l f llY ++p  +v+ r
      EHT98705.1 121 LNAIWRSHKKRPLVYSFAVYWMILTLGPLLAGASLAISSYLLS-LK----WINVT-GVTSL-VDQTLRF-FPLLLSWLSFWLLYSIVPTQRVPSR 207
                     *****************************************99.33....33333.23334.6788888.7999********************* PP

  Virul_fac_BrkB 191 aalpGallaallwllvkilfslylsnfasynaiYGslgaliilllWlylsalilLlGaelnaelqe 256
                     +al Gal+a+ll++l+k +f+ly++ f +y+ iYG l++++il+lW+y+++ i+LlGae++++l++
      EHT98705.1 208 DALTGALVAGLLFELGKKGFALYVTMFPTYQLIYGMLAVIPILFLWVYWTWCIVLLGAEITVTLDD 273
                     **************************************************************9986 PP

>> UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     3e-05      0.27       7      41 ..      95     129 ..      70     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
                     HTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  UCR_UQCRX_QCR9   7 lfrrnstfvltifagAfvferafDsatdkiWdsiN 41 
                     + r +++ ++  +++A+ +   +Dsa ++iW+s+ 
      EHT98705.1  95 VHRMTAVGAVGLIVTALLLMHSVDSALNAIWRSHK 129
                     567788889999********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2219.58
//
Query:       EHT98706.1  [L=145]
Description: D-Tyr-tRNA(Tyr) deacylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-53  178.9   0.0    9.5e-53  178.6   0.0    1.0  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.0   5.3e-57   9.5e-53       2     143 ..       3     143 ..       3     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 5.3e-57
                    EEEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEEETTSSEEEETTTTT-EEEEEE-GGGGSBTSSSSS-BGTTB-- CS
  Tyr_Deacylase   2 aviqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrifedeegkmnlsvkdvggevLvVsqftLyadtrkGrrpsfhkaak 97 
                    a+iqrv++Asv++++ vvg+ig+Gll+l+gvek+d+e+++e+la+++l +rif+de+gkmnl+vk++gg+vLvVsqftL+adt+kG rpsf+  a+
     EHT98706.1   3 ALIQRVQRASVSIDHAVVGEIGQGLLILLGVEKGDDEKRAERLAERVLGYRIFSDEQGKMNLNVKQAGGSVLVVSQFTLAADTQKGMRPSFSGGAA 98 
                    68***********99********************************************************************************* PP

                    HHHHHHHHHHHHHHHHHCTCTTEEE--TTS-EEEEEEEEEEEEEEE CS
  Tyr_Deacylase  98 peeaeelyekfveklrerlgekvetGeFgadmkvslvndGPvtill 143
                    p+eae+lye+f + +r++ + + ++G+F adm+v+lvndGPvt++l
     EHT98706.1  99 PQEAERLYEYFSACCRRH-DVTTANGRFAADMQVALVNDGPVTFWL 143
                    ****************86.779**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1169.14
//
Query:       EHT98707.1  [L=315]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-45  152.9   0.0    6.6e-45  152.5   0.0    1.2  1  YiiD_C           Putative thioesterase (yiiD_Cterm)
    3.5e-14   53.0   0.0    5.5e-14   52.4   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.1e-11   43.3   0.0    5.3e-11   42.6   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.8e-07   29.6   0.0    1.4e-06   28.6   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00027   20.8   0.0     0.0006   19.7   0.0    1.6  1  FR47             FR47-like protein
    0.00072   20.2   0.0     0.0012   19.6   0.0    1.3  1  Acetyltransf_5   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.088   12.9   0.0       0.16   12.1   0.0    1.4  1  DUF4442          Domain of unknown function (DUF4442)
       0.16   11.9   0.1       0.38   10.7   0.1    1.5  1  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> YiiD_C  Putative thioesterase (yiiD_Cterm)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   2.9e-48   6.6e-45       1     143 [.     158     297 ..     158     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 2.9e-48
      YiiD_C   1 lqelqetlhqeIPlseamgikvesydgkelelsaplapNiNlkgtmFaGSiytlatltgWglvwLqlkeaglkgdiVladakikYlkPvtedptaqvsl 99 
                 + +lq+ + ++IPlse+mg+++ +y+g+++++++p + N N + t+FaGS+++latltgWgl+wL l+e++l g+i+lada+i+Y +P+t++p a+++l
  EHT98707.1 158 CGQLQQAWYEHIPLSEKMGVRILQYTGQKFITTMPETGNQNPHYTLFAGSLFSLATLTGWGLIWLLLRERHLGGTIILADAHIRYSRPITGKPGAIADL 256
                 679************************************************************************************************ PP

      YiiD_C 100 peeealeedleslarkkkarikleveilsgeelaaeftGeyvvl 143
                     +l++dl++lar++kar++lev+++ ++e+ a f+  y+vl
  EHT98707.1 257 G---SLSGDLDRLARGRKARVQLEVQLFGDDECGAVFEAVYIVL 297
                 *...*************************************997 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.4e-17   5.5e-14      14     117 .]      26     122 ..      13     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.4e-17
                     HHHHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  14 ppnedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                     +p ++++  e+  +    a +  v+ e g++++  +l+++ d   ++a+i++laV+p+ +gkGlG++   +le  ar+eg+k++ +   +  + a
      EHT98707.1  26 KPLHQPQGSERDAWD-ALAHHQMVVDEQGKPVAVGRLYINAD---NEAAIRFLAVHPTVQGKGLGTLVAMTLESVARQEGVKRVTC---SAREDA 113
                     333333333333442.234466778999**************...9*************************************999...778889 PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     ++++ klG+
      EHT98707.1 114 VAFFAKLGY 122
                     ****99**8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   2.4e-14   5.3e-11      29     112 ..      42     128 ..      22     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 2.4e-14
  Acetyltransf_10  29 gealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgee 112
                       +++ +v++e+gk+v v++l  + +    i  l+V+p  +g+G+g+   +++e+ a+++g k ++t+ a   av+f+ klG+ + ge 
       EHT98707.1  42 LAHHQMVVDEQGKPVAVGRLyINADneaAIRFLAVHPTVQGKGLGTLVAMTLESVARQEGVK-RVTCSAREDAVAFFAKLGYLNQGEI 128
                      567889999******9887765555678****************************999999.*******************888765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   6.4e-10   1.4e-06       5      74 ..      46     122 ..      42     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 6.4e-10
                     EEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHH.HHH..TT..SEEEEEEEEETHH.HHHHHHHHTTE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraL.lea..ae..kgiileqlelnae.kaikfYeklGF 74 
                       V++++gk+v   +l++++   a i +laV+p  +gkG+G+   +++  ++  +g++   ++ +a+  a++f++klG+
      EHT98707.1  46 QMVVDEQGKPVAVGRLYINAdneAAIRFLAVHPTVQGKGLGTLVaMTLesVArqEGVKR--VTCSAReDAVAFFAKLGY 122
                     4578889999988888888777777777**************99544434114467542..233332379********9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.7e-07    0.0006      22      78 ..      69     123 ..      51     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.7e-07
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfe 78 
                  ++  l v+p+++++Glg++++  l    +++g  v  v+  + + + +++ klG+ 
  EHT98707.1  69 AAIRFLAVHPTVQGKGLGTLVAMTLESVARQEG--VKRVTCSAREDAVAFFAKLGYL 123
                 678899*************99887765444444..44455556667999******95 PP

>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.2e-07    0.0012       4      57 ..      17      70 ..      15      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.2e-07
  Acetyltransf_5  4 evFreemgaegeaaapeldiDefDavcdhllvideaeevVGtyRllrpdeaerl 57
                      Fr em  ++ ++ ++ ++D++Da ++h +v+de+ + V++ Rl  ++ +e++
      EHT98707.1 17 YQFRWEMLRKPLHQPQGSERDAWDALAHHQMVVDEQGKPVAVGRLYINADNEAA 70
                    56999999999998888*******************99******9888777754 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     7e-05      0.16      38     118 ..     193     283 ..     162     297 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
                 -GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-T...TEEEEEEEEEEEE-S---S-EEEEEE-TT.....S-T...T--EEEEEEEEEEET CS
     DUF4442  38 rrrvrNhigtvHAiAicnlaElamGllaeatlpd...thrwipkgmevdYlakatgdltavaelep.....edv...gekeelvvevevrde 118
                   +++N   t++A+++++la l+   l+   l++   +  +i   ++++Y ++ tg+  a+a+l +     + +   g+k  +++ev++  +
  EHT98707.1 193 ETGNQNPHYTLFAGSLFSLATLTGWGLIWLLLRErhlGGTIILADAHIRYSRPITGKPGAIADLGSlsgdlD-RlarGRKARVQLEVQLFGD 283
                 4689*****************99866666777773455679***********************99776641.2444777777777776543 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00017      0.38      10      31 ..     192     214 ..     189     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                      XXXXXXXXXXXXXXX..XXXXXXX CS
  Gram_pos_anchor  10 PkTGengnifltaaG..llallgg 31 
                      P+TG n+n+ +t+++  l+ l++ 
       EHT98707.1 192 PETG-NQNPHYTLFAgsLFSLATL 214
                      9***.**********754444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2646.90
//
Query:       EHT98708.1  [L=559]
Description: hypothetical protein CKS_4305 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-25   88.9   7.3    5.6e-25   88.2   7.3    1.3  1  AsmA      AsmA family
      1e-06   28.5  14.4    0.00038   20.1   0.6    4.4  3  AsmA_2    AsmA-like C-terminal region
  ------ inclusion threshold ------
        1.5    8.8   5.2        2.7    8.0   5.2    1.4  1  FixQ      Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   7.3   9.4e-29   5.6e-25      10     546 ..       6     533 ..       1     546 [. 0.88

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 9.4e-29
        AsmA  10 lilivLlLLlv.lliaiialfdpnnykptlqqkvkeatnrplaiegdigrsl.lPwptlsLsdiklaspegakkpelvsveqveisLsplpLlrkqiei 106
                  ++++LlLLl  +li++++l++++   + +   v+++t   l++ ++ ++ +  P+ +++L d +++++    +p +    +v++ +++l  +++    
  EHT98708.1   6 KFFLTLLLLLLfALIVVYVLLQTQWGAGWFSRWVSDKTEWHLSLSKI-EHNFsSPT-HIILDDFSFGHEG---QPAVLVAKRVDLGIALLQ-FSDPFHF 98 
                 46777777777799****************999***********998.55542699.*************...55556679******9986.8999*** PP

        AsmA 107 asikldgpslslerlkdgkknwqeliqnnqnaasnantqqkqptqtraalsldigeikvsngkvtyddkasekilndidlelqvsalkgpslawrkiki 205
                 asi+l   +++l  l+++ +   + +q+n  +++n          +++a  l++ + +v++g v ++ +a      d+  +++ + +   s+ + ++ i
  EHT98708.1  99 ASIELRDGEVNLANLANKSA---LPMQANRLQLNN-------MRIDSPASALPLAAQQVNGGIVPWHPQAGDLLGRDAQFQMSAARMTLNSVDGENVLI 187
                 *****************999...899999999999.......5666677778888999***************999**999999999999*99999999 PP

        AsmA 206 sGkleqdnqsfgslvnvkvnkgelsge...alqnstktlgm.................kllqdlsspiyeinslklesnqlaldgtlitnlnlskedlr 284
                 +G+ +q    f s++ +  ++g ++g+     q++ k+                    k+ ++   p++  n++++  ++l+ +++++t l l   +l+
  EHT98708.1 188 QGNVSQGRMVF-SNIGADLARGSMTGNgerDAQGNWKINQLrlndirlqtahtlvdflKPFEEV--PSVTLNRVDITDARLQGPDWAVTDLDLTLKNLS 283
                 99999999999.7777777666665541112345555554489999999997777655666655..67899**************************** PP

        AsmA 285 LkasglksilaalslkadeldslanqaeltgvnlprtpqaitlqelslsaktensqvsivL..knltlnldklsvngkkiviksdinganqlpkaqarp 381
                  k   ++s+   l+++a++  + +  +  + +n+ ++pq i l ++s ++ ++ ++  ++   ++  l l++l+v g       ++n  ++  ++ a p
  EHT98708.1 284 WKGRDWQSQDGSLAMNAGNFINGRFELNDPIINMDFSPQGIALTQFSSRWANGVIRADGNWsrQDKRLTLNNLAVAGL--EYTLPQN--WRALWQDALP 378
                 ********************99999999*************************99988876225778899********..5556665..9999****** PP

        AsmA 382 klrgkLsspeLdldrlqpikaaiatkskaneqkasglsadkknkplkeerillgvwqeieadlsanidkvtyssllisdlkaklrlegGvlqLsrlkag 480
                  +   +++ +   +r ++i        +a   + ++l+  ++n++l ++++ +g w++   +ls+n++  t +   + + ++ l++++ +++ ++l a 
  EHT98708.1 379 DWLDAVTVTRFTSNRNLLIDIN-----PAFPFQLTSLDGSGENLQLARQHQ-WGIWSG---KLSLNAAESTFNRTDLRHPSVALEADEQQIKVTELSAF 468
                 ***99***99999999999888.....99999*******************.******...************************************** PP

        AsmA 481 lygGeleakgqldlskksatvrlklnaknlplkrLladlskikkldGlldididltgsGnsvatli 546
                   +G le+++ +  +++  +v+l+l  +++p+  L+++  ++ +l+G +++++ l +s   ++ l+
  EHT98708.1 469 SGKGLLEGTATIG-QQADRPVSLNLTGRGVPVNVLQNWGWPALPLQGDSNLQLRLNASLKANQPLA 533
                 ************9.***************************************9998866665555 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   2.1    0.0056        34      10      95 ..     121     215 ..     111     313 .. 0.53
   2 !    9.5   0.2   0.00011      0.64       9      43 ..     318     352 ..     310     415 .. 0.81
   3 !   20.1   0.6   6.4e-08   0.00038       3     107 ..     448     551 ..     446     558 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0056
      AsmA_2  10 lkdeglrldnlrlrspggklsgsgswstk........ggaartnldlkldgvdlgallkrlglaevl.gGkgs.lelnlswqgaplspdlssLsGd 95 
                 +++++l+l+n+r++sp   l + ++  ++        +g   +  d++++ + +  +l++++ + vl +G++s   + +s  ga+l+    + +G+
  EHT98708.1 121 MQANRLQLNNMRIDSPASALPLAAQQVNGgivpwhpqAG-DLLGRDAQFQMSAARMTLNSVDGENVLiQGNVSqGRMVFSNIGADLARGSMTGNGE 215
                 567777777777777777777766644432433332111.23444444444444444444444444444444433333333333333332333332 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00011
      AsmA_2   9 rlkdeglrldnlrlrspggklsgsgswstkggaar 43 
                     +g+ l+++++r+ +g + ++g+ws +++  +
  EHT98708.1 318 DFSPQGIALTQFSSRWANGVIRADGNWSRQDKRLT 352
                 5567899**********************987333 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 6.4e-08
      AsmA_2   3 nvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdl.gallkrlglaevl.gGkgslelnlswqgaplspdlssLsGdlsle 99 
                 + s+ l+ +++++++++l++ s++g l+g++++ ++++     ++l+l+g+ +   +l+++g +    +G+ +l+l+l+  ++  +p+ +s + +ls++
  EHT98708.1 448 HPSVALEADEQQIKVTELSAFSGKGLLEGTATIGQQAD---RPVSLNLTGRGVpVNVLQNWGWPALPlQGDSNLQLRLNASLKANQPLAPSVNATLSVT 543
                 55788999999********************9999876...345566666655247899***777544******************************* PP

      AsmA_2 100 ledgqilg 107
                 +++ q+++
  EHT98708.1 544 TDSQQLQQ 551
                 **999988 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.2   0.00046       2.7       9      30 ..       4      25 ..       1      27 [. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00046
        FixQ  9 fadswgllflvllfygvviyaf 30
                +++++++l+l+llf+ +v+y++
  EHT98708.1  4 IGKFFLTLLLLLLFALIVVYVL 25
                579*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4025.03
//
Query:       EHT98709.1  [L=457]
Description: xanthine permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-106  355.1  41.1   4.8e-106  354.7  41.1    1.2  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
      0.033   13.8   0.5      0.033   13.8   0.5    4.0  3  Wzy_C            O-Antigen ligase
      0.045   13.5   0.3      0.096   12.5   0.3    1.5  1  SprB             SprB repeat
       0.27   11.5   3.8       0.35   11.1   1.0    2.6  2  DUF3925          Protein of unknown function (DUF3925)


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.7  41.1  1.1e-109  4.8e-106       2     387 ..      29     421 ..      28     423 .. 0.98

  Alignments for each domain:
  == domain 1  score: 354.7 bits;  conditional E-value: 1.1e-109
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-..........H.HHHHHHHHHHHHHHHH...HTTT-----EEE-GGGHHHHHGGG-.........HH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalgl.aeelrqlisatllasGiatllqll...ifgirlpillgssfafvtalmialGsa.....edie 86 
                      q+l+++ Qhllamf+a+++++ll+++algl a++++++is++l+asG+a++lq+    ++g++l +++g+sf+fvt ++i+ G+a     +d+ 
       EHT98709.1  29 QTLFAAGQHLLAMFVAVITPALLICQALGLpAQDTQHIISMSLFASGVASVLQIKtwgPIGSGLLSIQGTSFNFVT-PLIMGGMAlknggADVP 121
                      899***************************************************999*******************.******99********* PP

                      HHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-...BTT.B---HHHHHHHHHHHHHHHHHHHSSS CS
  Xan_ur_permease  87 ialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa.vegltvvslkllllavvvllvilllsvflk 179
                      +++a+l+g+l+va+++ +++s++++    +r+i+P+v+g+vv++iGlsl+q++++++ggg aa  +   ++++k+llla +vl+vi+ll++ ++
       EHT98709.1 122 TMMAALFGTLMVASCTEMVLSRVLH--LARRIITPLVSGIVVMIIGLSLIQVGLTSIGGGFAAmNDH-SFGAPKNLLLAGAVLVVIILLNRQKN 212
                      *************************..8*********************************995555.************************** PP

                      TTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII...IIIHH CS
  Xan_ur_permease 180 glfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkp...kpdlr 270
                      ++++  +++i++++g+lla++mg++++ + +  +p + +p+pl++g   f+++l++ +++v++v+++e++Gdi+a+++v+++++++   +++l+
       EHT98709.1 213 PYLRVASLVIAMAVGYLLAWAMGMLPTLSTPAGQPIVAFPTPLYYGLG-FDWNLLIPLMLVFMVTSLETIGDITATSDVSEQPVSGplyMKRLK 305
                      ***********************9999999******************.9************************************9******* PP

                      HHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
  Xan_ur_permease 271 ralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdl 364
                       ++la+Gl++++s+l++++p++++++n+Gv++lt+vasr+v+++++++lillgl+p+++ l+++IPepvlgG+++v+fg+iaasgv++++++ l
       EHT98709.1 306 GGVLANGLNSFVSALFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLILLGLFPAVSGLVQHIPEPVLGGATIVMFGTIAASGVRIVSREPL 399
                      ********************************************************************************************** PP

                      -SHHHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 365 dsarnllivavslvlGlgvatvp 387
                      + +r+++i+a+sl+ Glgv+++p
       EHT98709.1 400 N-RRAIMIIALSLAAGLGVSQQP 421
                      *.*****************9987 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.2      0.27   1.2e+03      20      58 ..     133     171 ..     122     189 .. 0.63
   2 ?   13.8   0.5   7.4e-06     0.033      21      71 ..     195     286 ..     192     326 .. 0.83
   3 ?   -5.9   9.8         4   1.8e+04      12      54 ..     338     389 ..     334     454 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.27
       Wzy_C  20 igllvalivlliifykrripfllllgilvgvilliilfv 58 
                 ++ +  +++  ++++ rri   l++gi+v++i l +  v
  EHT98709.1 133 VASCTEMVLSRVLHLARRIITPLVSGIVVMIIGLSLIQV 171
                 455556677777777777755555555555554444443 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.4e-06
       Wzy_C  21 gllvalivlliifykrripfllllgilvgvilliilfv.........................................lstnletlknitk 71 
                  l++a++v++i++ +++ p+l+++ ++++++++++l++                                         + t+let++ it 
  EHT98709.1 195 LLAGAVLVVIILLNRQKNPYLRVASLVIAMAVGYLLAWamgmlptlstpagqpivafptplyyglgfdwnlliplmlvfMVTSLETIGDITA 286
                 5789**********************************888888888888888888888888888888888888888887777777777664 PP

  == domain 3  score: -5.9 bits;  conditional E-value: 4
       Wzy_C  12 lstsRsgiigllvalivlliifykrri.........pfllllgilvgvilli 54 
                 l++  s ++g++val+++l+ ++             +  +  +++ g+i++ 
  EHT98709.1 338 LTGVASRYVGFVVALMLILLGLFPAVSglvqhipepVLGGATIVMFGTIAAS 389
                 6677778888888877777766665556666666542222222333333333 PP

>> SprB  SprB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   2.1e-05     0.096       3      20 ..     322     339 ..     321     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
        SprB   3 tttnvtCnggndGsItvt 20 
                 +t++++C+g n+G I++t
  EHT98709.1 322 NTFPNSCFGQNNGVIQLT 339
                 6899***********998 PP

>> DUF3925  Protein of unknown function (DUF3925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   7.9e-05      0.35      20      60 ..     124     164 ..     120     169 .. 0.84
   2 ?   -1.0   0.1      0.46   2.1e+03      15      31 ..     347     362 ..     336     381 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
     DUF3925  20 mmllfvvGWvldvnGlflskyftlagmimlPlvGGivGlfi 60 
                 m  lf +  v     + ls+ + la  i+ Plv Giv + i
  EHT98709.1 124 MAALFGTLMVASCTEMVLSRVLHLARRIITPLVSGIVVMII 164
                 44577777778888999********************8876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.46
     DUF3925  15 yfvlymmllfvvGWvld 31 
                  fv+ +ml+ + G +  
  EHT98709.1 347 GFVVALMLI-LLGLFPA 362
                 455544443.2333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3246.10
//
Query:       EHT98710.1  [L=692]
Description: ATP-dependent DNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-20   71.3   1.0    1.9e-19   70.1   0.0    2.1  3  DEAD             DEAD/DEAH box helicase
    1.3e-18   67.2   0.0      2e-18   66.5   0.0    1.3  1  RecG_wedge       RecG wedge domain
    4.3e-18   65.7   0.0    7.6e-17   61.7   0.0    2.4  2  Helicase_C       Helicase conserved C-terminal domain
    2.7e-12   47.0   0.0    4.5e-12   46.3   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
    8.2e-08   32.1   0.1    2.9e-07   30.4   0.0    1.9  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
    6.5e-06   25.7   0.0    1.4e-05   24.5   0.0    1.5  1  SecA_DEAD        SecA DEAD-like domain
    3.7e-05   23.5   1.7    3.7e-05   23.5   1.7    2.2  2  AAA_30           AAA domain
     0.0017   17.1   0.0     0.0021   16.8   0.0    1.2  1  SNF2_N           SNF2 family N-terminal domain
     0.0084   15.4   0.1      0.012   14.9   0.1    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.024   14.5   0.2      0.061   13.2   0.1    1.7  2  Helicase_RecD    Helicase
      0.027   14.3   0.0      0.066   13.0   0.0    1.6  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
      0.036   13.9   0.0       0.32   10.8   0.0    2.4  3  DUF2344          Uncharacterized protein conserved in bacteri
      0.043   13.3   0.0       0.11   11.9   0.0    1.6  1  PhoH             PhoH-like protein
      0.047   14.0   0.0       0.16   12.3   0.0    2.0  1  IMS_HHH          IMS family HHH motif
      0.065   13.5   0.7        3.2    8.0   0.1    3.4  3  AAA_22           AAA domain
      0.082   12.4   0.0       0.43   10.1   0.0    2.1  2  PRTase_2         Phosphoribosyl transferase
       0.11   11.7   0.0       0.17   11.0   0.0    1.2  1  ERCC3_RAD25_C    ERCC3/RAD25/XPB C-terminal helicase
       0.17   12.1   0.0       0.73   10.1   0.0    2.0  2  Cdd1             Pathogenicity locus


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   1.9e-22   1.9e-19       4     170 ..     273     431 ..     270     438 .. 0.80
   2 ?   -3.2   0.0       5.9   5.9e+03      67     104 ..     510     549 ..     491     552 .. 0.62
   3 ?   -2.1   0.0       2.8   2.8e+03     130     155 ..     648     673 ..     648     679 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.9e-22
                 HHHHHHHHHTTCEEE........EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHH CS
                 xxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx RF
        DEAD   4 Qaeaiplilgggdvl........vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig...gvaardql 91 
                 Q++++ +i   +d+         v++++GsGKTl++++++l+ +      +g+++ +++Pt+ Laeq++nn+++++ +++l+v ++ g   g+a++ q+
  EHT98710.1 273 QKRVVAEIE--KDLAndfpmlrlVQGDVGSGKTLVAALAALNVI-----AHGKQVALMAPTELLAEQHANNFRQWLAPLGLEVGWLAGkqkGKARQAQQ 364
                 555555555..2333333334449*****************999.....5799***************************999988666679999**** PP

                 HHHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  92 skldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +++ +g v +vvgt+  +++ +     +++ + ++++DE +r+   ++   +++  +q        +     ++++AT+ 
  EHT98710.1 365 EAIASGqVAMVVGTHALFQEQV-----KFNGLALVIIDEQHRFGVHQRLALWEKGEEQG-----FHPH---QLIMTATPI 431
                 ***8778********8888744.....3****************999999998877766.....2222...477888876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.9
                 HHHHTTTSTSEEEEEETTSSHHHHHHHH...H.TTCSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...x.xxxxxxxxx RF
        DEAD  67 lkkfkkyidlrvlliiggvaardqlskl...d.ngvdivvgt 104
                 lk  +   dl+v l+ g  +  ++l+++   + n+++++v+t
  EHT98710.1 510 LKVALP--DLQVGLVHGRMKPAEKLAVMqafKaNEIQLLVAT 549
                 333333..5777778887777777777743323568888877 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.8
                 HHHHHHTTTHHHHHHHHHHSHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 130 adrlldqgfsdfinrilnqlpqitcd 155
                 ad l dq + ++++r+++++++ + +
  EHT98710.1 648 ADLLRDQAMIPEVQRVARHIHEHYPE 673
                 79999999999999999999665544 PP

>> RecG_wedge  RecG wedge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0     2e-21     2e-18       5     162 ..      14     172 ..      10     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 2e-21
  RecG_wedge   5 akgvGekrekiLkklgietiedllyyfPrdyedrrkivpiseikedekvtvkgklvnvekkkissltiisavlsdgisqvlLkWfnqey.ikkklktlk 102
                 + gvG +++++L+k+g++ti+dll ++P  yedr ++  i+++  +   tv+g++   + +  +  ++++  + dg + + L++fn +  +k+ l    
  EHT98710.1  14 LTGVGASQAAKLAKIGLHTIQDLLLHLPLRYEDRTQLYAINDLLPGIWATVEGEVLHTD-ITFGRRRMMVCQIGDGSGVLTLRFFNFNAgMKNSLA--P 109
                 579****************************************************9865.778999999999**************8753788888..9 PP

  RecG_wedge 103 ekevlvtGlvkkgefGaleiknPeieeitg..eqere..ilPvysLtegisqkelrkivkenis 162
                 +++v ++G +k+g+ Ga ei  Pe   + +  ++++e  + Pvys tegi+q +lr +  + ++
  EHT98710.1 110 GRRVTAYGEIKRGQRGA-EIIHPEYRVQGEhsHVTLEetLTPVYSTTEGIRQATLRSLTDQALT 172
                 ***************97.77789976444400444446689***************99888776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.42   4.2e+02      15      76 ..     316     381 ..     303     402 .. 0.70
   2 !   61.7   0.0   7.6e-20   7.6e-17      10     110 ..     475     587 ..     466     588 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.42
                 TTSEEEEEESSHHHHHH.HHHHHHHT.....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGG CS
  Helicase_C  15 eggkilifvntidrlek.vklllekk.....gikvavlhgelpqnereeileqfnkgesdvLiatdva 76 
                 +g+++ ++++t   +e+ ++ +  ++     g++v  l g+ + + r++  e+  +g++ +++ t ++
  EHT98710.1 316 HGKQVALMAPTELLAEQhANNF--RQwlaplGLEVGWLAGKQKGKARQAQQEAIASGQVAMVVGTHAL 381
                 5555555555555444443333..22445669999*************************99999764 PP

  == domain 2  score: 61.7 bits;  conditional E-value: 7.6e-20
                 H.HHTTTTSEEEEEESSHHHHHH......HHHHHHHT..........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEES CS
  Helicase_C  10 l.kleeeggkilifvntidrlek......vklllekk..........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinf 91 
                 + k  +eg++++ +++ i++ +                         +++v  +hg+++  e+++++++f+++e+++L+at+v+e G+d+p+++l+i+ 
  EHT98710.1 475 VqKACHEGRQAYWVCTLIEESDLleaqaaE------AtweelkvalpDLQVGLVHGRMKPAEKLAVMQAFKANEIQLLVATTVIEVGVDVPNASLMIIE 567
                 34677899999********77433323321......023334467789*************************************************** PP

                 SSSSS.HHHHHHHHTTSSST CS
  Helicase_C  92 dlprn.vtsyiqriGRtgRa 110
                 ++ r  +++++q +GR+gR+
  EHT98710.1 568 NPERLgLAQLHQLRGRVGRG 587
                 ***655*************7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   4.5e-15   4.5e-12       3     169 ..     268     430 ..     266     432 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 4.5e-15
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--. CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkkak 97 
                 ++   Q++++ ++++ l ++     l++   G+GKTlvaa ++ ++  +gk  ++ +++p++ l eq  ++f+++l +   e    + +k +g+     
  EHT98710.1 268 SPTAAQKRVVAEIEKDLANDFPMLRLVQGDVGSGKTLVAALAALNVIAHGK--QVALMAPTELLAEQHANNFRQWLAPLGLEvgwlA-GKQKGKA---- 359
                 56788999******9997333335569********************9877..9***********************9988866642.2222222.... PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT---SEEEEEESS- CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk...swreilekfkeavllglTATp 169
                  +++++  i   ++ ++          +e+ + +   ++iiDE Hr+g  +    w++  e+  +  +l +TATp
  EHT98710.1 360 -RQAQQEAIASGQVAMVVGTH---ALFQEQVKFNGLALVIIDEQHRFGVHQrlaLWEKGEEQGFHPHQLIMTATP 430
                 .33344444444444444444...3345556888888***********973455888887777779********9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.9e-10   2.9e-07       2      74 ..      63     134 ..      62     136 .. 0.96
   2 ?   -2.0   0.0       3.7   3.6e+03      40      62 ..     361     383 ..     351     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.9e-10
                      EEEEEEEEEE.EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEE CS
  tRNA_anti-codon   2 tvaGrvtsis.drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveeie 74 
                      tv+G+v  +  + + ++++  ++ Dg+g +++ +f+     ++++l +G  v ++G++kr ++g  e++++e++
       EHT98710.1  63 TVEGEVLHTDiTFGRRRMMVCQIGDGSGVLTLRFFN-FNAGMKNSLAPGRRVTAYGEIKRGQRG-AEIIHPEYR 134
                      899*********************************.***************************.*****9986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.7
                      HHHHTTS-TTSEEEEEEEEEECT CS
  tRNA_anti-codon  40 tklaenlkeGdvvrvtGrvkrrp 62 
                      ++++e +  G+v  v G+   ++
       EHT98710.1 361 QAQQEAIASGQVAMVVGTHALFQ 383
                      67899999*******99866655 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.4e-08   1.4e-05      99     164 ..     298     363 ..     291     371 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.4e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  99 TGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerrea 164
                  G GKtlva+l+a+    +gk+v +++  + La++ a+++++    lGl+vg++  +++ ++r+++
  EHT98710.1 298 VGSGKTLVAALAALNVIAHGKQVALMAPTELLAEQHANNFRQWLAPLGLEVGWLAGKQKGKARQAQ 363
                 699************99*************************************999999888875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.7   3.7e-08   3.7e-05      15     114 ..     286     416 ..     270     420 .. 0.82
   2 ?   -2.5   0.1       3.5   3.5e+03      57     113 ..     527     585 ..     502     590 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.7e-08
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa............................eelgieastiakllkrlk...g 82 
                 ++  ++ +++G  G+GKt + + ++  + a+g++v+++Apt+  A++ a                            ++  i++  +a ++ +++   +
  EHT98710.1 286 NDFPMLRLVQGDVGSGKTLVAALAALNVIAHGKQVALMAPTELLAEQHAnnfrqwlaplglevgwlagkqkgkarqaQQEAIASGQVAMVVGTHAlfqE 384
                 44556899************99999999999***************9886777777777777777777766666655577799999999999999**97 PP

      AAA_30  83 rarlepgtllivDEagmvdtkqlaallkaaek 114
                 +++++   l+i+DE    + +q  al ++ e+
  EHT98710.1 385 QVKFNGLALVIIDEQHRFGVHQRLALWEKGEE 416
                 7899999********99999999888877665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.5
      AAA_30  57 kaAkvLaeelgieastiakllkrlk..grarlepgtllivDEagmvdtkqlaallkaae 113
                 k A++La    ++a+ i+ l+ ++     +++ +++l+i+     ++ +ql++l  ++ 
  EHT98710.1 527 KPAEKLAVMQAFKANEIQLLVATTVieVGVDVPNASLMIIENPERLGLAQLHQLRGRVG 585
                 55777887778899999988877778844677788999999888888888888877665 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06    0.0021     101     220 ..     322     435 ..     123     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
                 EE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------E.EEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHH. CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
      SNF2_N 101 ivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydv.vittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstska. 196
                 + +P+  l++q  n++++++++  l+v    g++  k k ++ +++  a  +v ++++ + l +        +++k      v++DE h+++ +++ a 
  EHT98710.1 322 LMAPTeLLAEQHANNFRQWLAPLGLEVGWLAGKQ--KGKARQAQQEAIASGQVaMVVGTHALFQ--------EQVKFNGLALVIIDEQHRFGVHQRLAl 410
                 5789977899*****************9999976..5555666666666666633444444442........457888899*************75441 PP

                 HHHHHH--.-S-EEEE-S--SSS-H CS
                 xxxxxxxx.xxxxxxxxxxxxxxxx RF
      SNF2_N 197 aeavskLs.tsnrwiltGTPiqnsl 220
                  e  ++     +++i+t+TPi++ l
  EHT98710.1 411 WEKGEEQGfHPHQLIMTATPIPRTL 435
                 44444433489***********976 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.2e-05     0.012       5     103 ..     293     405 ..     289     424 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
     DUF2075   5 lVtGvaGtGKtvvllnllael................eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeep 87 
                 lV+G+ G+GKt+v+  ++ ++                 ++  ++ ++ l   + +v  l  + ++k+++ + ++ +++  +++  ++     +e+ + +
  EHT98710.1 293 LVQGDVGSGKTLVAALAALNViahgkqvalmaptellAEQHANNFRQWLAPLGLEVGWLAGKQKGKARQAQQEAIASGQVAMVVGTH--ALFQEQVKFN 389
                 8************99888888455555555555555544445555555555555555555555555544444444444444444444..7778888999 PP

     DUF2075  88 kedvvivDEAhrlltk 103
                  + +vi+DE hr   +
  EHT98710.1 390 GLALVIIDEQHRFGVH 405
                 9**********98664 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.2   7.1e+03     147     166 ..      31      50 ..      22      55 .. 0.77
   2 ?   13.2   0.1   6.1e-05     0.061       2      98 ..     294     398 ..     293     413 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.2
  Helicase_RecD 147 relreleleepiRyaegdpl 166
                    +++++l l+ p+Ry+  ++l
     EHT98710.1  31 HTIQDLLLHLPLRYEDRTQL 50 
                    5678899999****988776 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.1e-05
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke.....eekkkkaekaelrvrkqrieyiapdellklkeqa. 91 
                    +++d G GK+ +++la+ ++ia+gk ++ + ap++  +++  + +++ l  lgl+      ++k k ++ ++ ++ + ++  +  +++l +++ + 
     EHT98710.1 294 VQGDVGSGKTLVAALAALNVIAHGK-QVALMAPTELLAEQHANNFRQWLAPLGLEVgwlagKQKGKARQAQQEAIASGQVAMVVGTHALFQEQVKf 388
                    67899******************98.9**************************9999998733333333333333344444444444444332224 PP

  Helicase_RecD  92 ...dllvvDE 98 
                        l+++DE
     EHT98710.1 389 nglALVIIDE 398
                    5558899998 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.6e-05     0.066       6      29 ..      14      37 ..      11      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
  DNA_pol_lambd_f  6 vyGVGpktAkkwyakGirtledlr 29
                      +GVG+++A k+ + G+ t++dl+
       EHT98710.1 14 LTGVGASQAAKLAKIGLHTIQDLL 37
                     58********************97 PP

>> DUF2344  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.3   2.3e+03      77     127 ..      99     153 ..      94     165 .. 0.76
   2 ?   -1.4   0.0       1.8   1.8e+03      69     115 ..     268     315 ..     256     367 .. 0.69
   3 ?   10.8   0.0   0.00032      0.32      39     115 ..     417     509 ..     416     563 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
     DUF2344  77 vverLnaqlpegikileveeieekakslmallaaaeYrve......eleealeefla 127
                 + + ++++l +g +++++ ei++   +  a++ + eYrv+      +lee+l+ +++
  EHT98710.1  99 FNAGMKNSLAPGRRVTAYGEIKRG--QRGAEIIHPEYRVQgehshvTLEETLTPVYS 153
                 566788999999999999999988..7778888999999766777766666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
     DUF2344  69 teevdpeevverLnaqlpegikileveeieek.akslmallaaaeYrv 115
                 + +   ++vv+++++ l +++++l++++ +    k+l+a+laa +   
  EHT98710.1 268 SPTAAQKRVVAEIEKDLANDFPMLRLVQGDVGsGKTLVAALAALNVIA 315
                 555677889999999999999999999988874566666666665554 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00032
     DUF2344  39 eGFnPhpkisfaaaLpvGveSegEyldielteev..................dpeevverLnaqlpegikileveeieekakslmallaaaeYrv 115
                 +GF+Ph+ i+ a+++p  + +   y+d++ ++ +                    +e++er++++  eg + + v  + e++  l a+ a+a+++ 
  EHT98710.1 417 QGFHPHQLIMTATPIPRTL-AMTAYADLDTST-IdelppgrtpvttvaipdsRRNEIIERVQKACHEGRQAYWVCTLIEESDLLEAQAAEATWEE 509
                 8**************9755.456688888884.33458999999999999999999***************999999999999999999999975 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.11       6      48 ..     270     318 ..     268     331 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 SHHHHHHHHHHH...H-S...EEEEE--TTSSTTHHHHHHHHHHHHTTS CS
        PhoH   6 tkeQkeylealk...knd...ivfaiGpaGtGKtylavalavealkkkk 48 
                 t++Qk+++  ++   +nd   +  + G+ G+GKt++a  +a++++ ++k
  EHT98710.1 270 TAAQKRVVAEIEkdlANDfpmLRLVQGDVGSGKTLVAALAALNVIAHGK 318
                 67899999999977655566678899*****************998865 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016      0.16       7      32 .]       5      30 ..       4      30 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
     IMS_HHH  7 fLwplpitkipGiGgklgekLeklGi 32
                +L  +p++ + G+G ++++kL+k+G+
  EHT98710.1  5 LLDAIPLSTLTGVGASQAAKLAKIGL 30
                68899******************996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0032       3.2       9     103 ..     293     402 ..     290     435 .. 0.61
   2 ?    1.7   0.0      0.29   2.9e+02      71     113 ..     464     511 ..     406     528 .. 0.77
   3 ?   -2.8   0.0         7   6.9e+03      93     115 ..     562     583 ..     542     590 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0032
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsstsskdllrell...ralglelkaerlsseellealeqalrarav.......... 91 
                 +v G +G+GKT++++  + +  ++      +++v+     +l ++    +++++l+    ++g  +   ++++   ++a ++a+ + +v          
  EHT98710.1 293 LVQGDVGSGKTLVAALAALNVIAH------GKQVAlmaPTELLAEQHANNFRQWLAplgLEVGWLA---GKQKGKARQAQQEAIASGQVamvvgthalf 382
                 5779**********9999986333......333331123333333355555555441003333322...334444444444444444444555555557 PP

      AAA_22  92 ........ielliiDEaqhl 103
                          +l+iiDE +++
  EHT98710.1 383 qeqvkfngLALVIIDEQHRF 402
                 77777888888999998887 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.29
      AAA_22  71 erlsseellealeqalrarav..ielliiDEaqhlr.s..eealeeLr 113
                 +  ++ e++e++++a+++ +    ++ +i+E + l  +  e+ +eeL+
  EHT98710.1 464 PDSRRNEIIERVQKACHEGRQayWVCTLIEESDLLEaQaaEATWEELK 511
                 456778899999****99999999999********6525688888884 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7
      AAA_22  93 elliiDEaqhlrseealeeLrsl 115
                 +l+ii++ ++l   ++l +Lr +
  EHT98710.1 562 SLMIIENPERL-GLAQLHQLRGR 583
                 78999999999.99999999755 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00043      0.43     105     184 ..     271     351 ..     268     356 .. 0.85
   2 ?   -1.7   0.0       1.7   1.7e+03     139     179 ..     470     512 ..     468     520 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00043
    PRTase_2 105 Atdhllyaedeellaaa.kelvLvDDEistGktalnliralqeklprkryvvvslvdwrseedeaafaaleeelgirievv 184
                 A +++++ae e+ la++   l Lv  ++ +Gkt+++ + al+  +  k++++++ +++  e++ ++f+++ + lg+++ ++
  EHT98710.1 271 AAQKRVVAEIEKDLANDfPMLRLVQGDVGSGKTLVAALAALNVIAHGKQVALMAPTELLAEQHANNFRQWLAPLGLEVGWL 351
                 5556666666666666525677***********************9**************************999998766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
    PRTase_2 139 nliralqeklpr..kryvvvslvdwrseedeaafaaleeelgi 179
                 ++i+++q+++ +  + y v++l++ ++  + +a++a+ eel++
  EHT98710.1 470 EIIERVQKACHEgrQAYWVCTLIEESDLLEAQAAEATWEELKV 512
                 5788888885544599******998888777777777777766 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.17      79     130 ..     516     566 ..     508     592 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
  ERCC3_RAD25_C  79 klkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliq 130
                     l+  +++G+++ ae+l+++q+fk+n +++ ++   v +  +D+P+a+ +i 
     EHT98710.1 516 DLQVGLVHGRMKPAEKLAVMQAFKAN-EIQLLVATTVIEVGVDVPNASLMII 566
                    5778899*****************98.78999999*************9885 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00073      0.73       8      40 ..      11      43 ..       7      53 .. 0.86
   2 ?   -2.3   0.0       5.4   5.3e+03      11      42 ..     558     589 ..     556     596 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00073
        Cdd1  8 lqdiPniGkalaedlvelGirsveelkgedpee 40
                l ++ ++G + a++l ++G++++++l  + p +
  EHT98710.1 11 LSTLTGVGASQAAKLAKIGLHTIQDLLLHLPLR 43
                78999*********************9888876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.4
        Cdd1  11 iPniGkalaedlvelGirsveelkgedpeely 42 
                 +Pn    + e+  +lG+ ++++l+g+ +   +
  EHT98710.1 558 VPNASLMIIENPERLGLAQLHQLRGRVGRGAV 589
                 56666666677778999999999998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4921.87
//
Query:       EHT98711.1  [L=233]
Description: tRNA (Guanosine-2'-O-)-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-37  127.0   0.2    8.1e-37  126.5   0.2    1.2  1  SpoU_methylase   SpoU rRNA Methylase family
    3.4e-23   81.1   1.1    5.2e-23   80.5   1.1    1.3  1  SpoU_methylas_C  SpoU, rRNA methylase, C-terminal


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.2   9.1e-41   8.1e-37       2     142 .]      20     159 ..      19     159 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 9.1e-41
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-SEGCCSHHH CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgkslseidlk 94 
                     l+v ++++++p+N++a++Rta+a+g++e++ v p +     ++ + a+ag+ ++++++++ s+++a+++lk ++++++at l  ++ +++eid++
      EHT98711.1  20 LTVCMEQVHKPHNVSAVIRTADAVGIHEVHAVWPGQR---MRTQASASAGSNSWVNVVTHRSISDAISHLKTQDMQILATNLsaDAVDFREIDYT 111
                     7899*****************************9997...6778899*********************************9955666777***** PP

                     TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  95 ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     +++++++G+E++G+++e+l+lad+++ Ipm g+v+SLNv+vA a++ly
      EHT98711.1 112 KPTCILMGQEKTGITDEALALADHHIIIPMVGMVQSLNVSVASALILY 159
                     **********************************************98 PP

>> SpoU_methylas_C  SpoU, rRNA methylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   1.1   5.8e-27   5.2e-23       1      54 []     163     218 ..     163     218 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 5.8e-27
  SpoU_methylas_C   1 RQRqaaGmYdrpr..LseeeyqrllFewgYPvlakvcrekglpYPaLdeeGeIlad 54 
                      RQRq+aGmY+r++  L+e+e+qrllFe+gYPvla+v+++k +pYP+++ +G+I+ad
       EHT98711.1 163 RQRQNAGMYRRQSslLAEKEQQRLLFEGGYPVLARVAKHKRMPYPHINAQGDIEAD 218
                      9**********999***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1751.22
//
Query:       EHT98712.1  [L=701]
Description: (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-52  176.9   0.7      4e-52  176.1   0.7    1.4  1  HD_4         HD domain
    2.8e-36  124.4   0.6    5.7e-36  123.3   0.1    1.8  2  RelA_SpoT    Region found in RelA / SpoT proteins
    1.5e-21   76.1   0.0    3.8e-21   74.9   0.0    1.7  1  TGS          TGS domain
    2.3e-16   60.1   1.8    1.7e-15   57.4   0.8    2.8  3  ACT_4        ACT domain
    1.5e-12   47.8   2.6    1.9e-12   47.5   0.7    2.1  2  HD           HD domain
      0.005   17.3   0.8      0.017   15.6   0.2    2.2  2  TFIIS_M      Transcription factor S-II (TFIIS), central domai
  ------ inclusion threshold ------
      0.041   14.1   0.0          1    9.7   0.0    2.6  2  BEN          BEN domain
       0.15   11.8   0.4       0.31   10.8   0.4    1.4  1  EMC3_TMCO1   Integral membrane protein EMC3/TMCO1-like
       0.86   10.1   2.8    1.1e+02    3.2   0.1    3.9  4  Terminase_2  Terminase small subunit


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.7     2e-55     4e-52       4     155 ..      29     175 ..      26     176 .. 0.97

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 2e-55
        HD_4   4 laaelhagqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqvenlRk 101
                 + +++h+gq++ +gep+++h+++vA ilae++ld+et++AalLhdv+ed+ ++++++++ fG++va+Lvegvskl++l+        ++k++q+en+Rk
  EHT98712.1  29 VSRDAHEGQTRSSGEPYITHPVAVACILAEMKLDHETLMAALLHDVIEDTpATYQDMEQLFGKSVAELVEGVSKLDKLKFR------DKKEAQAENFRK 121
                 67899*********************************************9999************************999......99********** PP

        HD_4 102 mLlAmveDirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                 m++Amv+Dirv+liklAdr++++r+l + +++krr++a etl+iy+plA+rlGi
  EHT98712.1 122 MIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIALETLEIYSPLAHRLGI 175
                 **************************9999***********************8 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.5   1.1e+04      30      39 ..     127     136 ..      93     151 .. 0.50
   2 !  123.3   0.1   2.9e-39   5.7e-36       1     115 [.     235     344 ..     235     346 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.5
                 SEEEEEEESS CS
   RelA_SpoT  30 ligiRvivef 39 
                 +  iRvi+ +
  EHT98712.1 127 VQDIRVILIK 136
                 2234555444 PP

  == domain 2  score: 123.3 bits;  conditional E-value: 2.9e-39
                 EEE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHH CS
   RelA_SpoT   1 gRvKslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtia 99 
                 gR K+lysi++K++ k+ +    f++i+D++++Rviv++ d++y+vl+ +++l++++p+r+kdyia+pk+ngY+slHt +    g+++v+vE+QiRt +
  EHT98712.1 235 GREKHLYSIYRKMTLKE-Q---RFHSIMDIYAFRVIVKDLDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSM---IGPHGVPVEVQIRTED 326
                 69**************9.6...8********************************************************9...**************** PP

                 HHHHHH..HHHHHHHHCT CS
   RelA_SpoT 100 mdawae..iehhlrYkek 115
                 md++ae  +++h+ Yk+ 
  EHT98712.1 327 MDQMAEmgVAAHWAYKQA 344
                 ****************87 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   1.9e-24   3.8e-21       1      60 []     388     447 ..     388     447 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.9e-24
                 EEEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   1 irvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 i+v+tP+G++++lp+gat++DfAy++h+++++++++A+V+ q ++l+++L +g+++eI+t
  EHT98712.1 388 IYVFTPEGRIVELPTGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTIEIIT 447
                 79********************************************************98 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.9   7.9e+03      51      70 ..     262     281 ..     254     283 .. 0.84
   2 ?   -0.6   0.0         1     2e+03      50      75 ..     458     483 ..     446     485 .. 0.84
   3 !   57.4   0.8   8.4e-19   1.7e-15       2      80 .]     621     698 ..     620     698 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.9
       ACT_4  51 kitveVkdvehLsrviakLr 70 
                  ++v Vkd++  +rv+ +++
  EHT98712.1 262 AFRVIVKDLDTCYRVLGQMH 281
                 57899*****9999998776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
       ACT_4  50 ikitveVkdvehLsrviakLraipgV 75 
                 +++ v+ k ++++++++++L++ ++V
  EHT98712.1 458 LNFVVSSKARAKIRQLLKNLKREDSV 483
                 6777777889999*********9998 PP

  == domain 3  score: 57.4 bits;  conditional E-value: 8.4e-19
       ACT_4   2 nesytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80 
                 ++++ ++++v + + +g+La++t++i+ ++ ni+s+n+++r+   + +  i++  +d+ hL+++++k+r +p+Vi+V+R
  EHT98712.1 621 EQEFVAEIKVDMFNHQGALANLTAAINTAGSNIQSLNTEERD-GRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVHR 698
                 689*************************************96.99*********************************9 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.7   9.3e-16   1.9e-12       1     122 []      45     144 ..      45     144 .. 0.78
   2 ?   -1.3   0.0       1.2   2.4e+03      73     117 ..     192     259 ..     171     264 .. 0.53

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 9.3e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrpr 99 
                 +++H+++Va++++++  d++       +l+aaLlHD++++++  +++        ++   k  ae+++ v k+++l++ d  ++ +e+++++ ++    
  EHT98712.1  45 YITHPVAVACILAEMKLDHE-------TLMAALLHDVIEDTPATYQD-------MEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMA---- 125
                 689*****************.......**************776444.......33445555555555555555555555678888888888766.... PP

                 HHHCCTSCHHHHHHHHHHHHHHH CS
          HD 100 glaerqlslearivklaDrlaam 122
                     + ++++++++klaDr+++m
  EHT98712.1 126 ----MVQDIRVILIKLADRTHNM 144
                 ....99***************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHH.HHHHHHHHHTTCCHHHHHHHH....................H....HHHCCTSCHHHHHHHHHH CS
          HD  73 rlgld.ledvaklirehheswegkkrp....................r....glaerqlslearivklaD 117
                 ++++  +++v+k++r +++ +  k                       +    + + ++  +e+r  +++D
  EHT98712.1 192 PNRFRvIKEVVKAARGNRKEMIQK--IlseidgrlqeagipcrvsgrEkhlySIYRKMTLKEQRFHSIMD 259
                 333336677888888777777622..22355444444444444433313444555555555555555555 PP

>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.4   1.3e+04      43      56 ..     118     131 ..      70     146 .. 0.60
   2 !   15.6   0.2   8.5e-06     0.017      47      94 ..     462     510 ..     454     520 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.4
                 T------HHHHHHH CS
     TFIIS_M  43 ekkstdkkykqkvr 56 
                 ++++  ++  q +r
  EHT98712.1 118 NFRKMIMAMVQDIR 131
                 22233333444444 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.5e-06
                 ---HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STT.TTS---TTTSS- CS
     TFIIS_M  47 tdkkykqkvrslvfNLkdkkNpeLrrrvlsgeispe.klvkmspeElas 94 
                 +++k ++k+r+l+ NLk+++  +L rr+ls ++  + kl++  +e  ++
  EHT98712.1 462 VSSKARAKIRQLLKNLKREDSVNLGRRLLSHALGGSrKLAEVPAENIKQ 510
                 67899*************************9997542677777766655 PP

>> BEN  BEN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00051         1      33      73 ..     186     223 ..     174     226 .. 0.84
   2 ?    1.1   0.0      0.24   4.7e+02       6      45 ..     473     520 ..     470     531 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00051
                 --EE--HHHHHHHHHHHHHHH--..........-HHHHHHH CS
         BEN  33 pkkaLDpnklsaIrnyveerypsekededwwrecldqInki 73 
                 + +aL pn++++I+++v+   ++   ++  ++++l++I+ +
  EHT98712.1 186 GFEALYPNRFRVIKEVVKAARGN---RKEMIQKILSEIDGR 223
                 5689*******************...888888888888766 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
                 HHHHHS-H......HHHHHEESS----GGGTT..---EE--HHHHHHH CS
         BEN   6 LlvklFpe......etlanssvtGkrsrafkr..ppkkaLDpnklsaI 45 
                 Ll+ l  e      + l ++ ++G r+ a  +  + k++LD+ kl+ +
  EHT98712.1 473 LLKNLKREdsvnlgRRLLSHALGGSRKLAEVPaeNIKQELDRMKLTSL 520
                 5555555555666677889999999887777799********999865 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00015      0.31      31      98 ..      68     133 ..      64     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
  EMC3_TMCO1  31 sellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsemmmdqmkpmivt 98 
                 + ll+ +  + ++   +q++e+ + k + el +  +kl + k+++++e  +e+ ++m+m +     v+
  EHT98712.1  68 AALLHDVI-E-DTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVI 133
                 55666654.3.44799********************************************98776655 PP

>> Terminase_2  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.055   1.1e+02      89     127 ..      83     123 ..      50     158 .. 0.69
   2 ?    0.5   0.0      0.39   7.8e+02      66      96 ..     196     222 ..     180     273 .. 0.71
   3 ?    2.8   0.1     0.075   1.5e+02      17      41 ..     336     360 ..     332     362 .. 0.91
   4 ?   -1.6   0.0       1.7   3.3e+03      64      64 ..     505     505 ..     461     580 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.055
  Terminase_2  89 kdseev.dkeilrevkegkegvkvklkDklkA.lellakhl 127
                  +d+e++ +k++++ v+++++  k+k++Dk++A +e+  k++
   EHT98712.1  83 QDMEQLfGKSVAELVEGVSKLDKLKFRDKKEAqAENFRKMI 123
                  45555415666777788888999999999666255555553 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.39
  Terminase_2  66 eVlqellkiaraeitdevervklkdseevdk 96 
                  +V++e++k ar++ ++ ++    k  +e+d+
   EHT98712.1 196 RVIKEVVKAARGNRKEMIQ----KILSEIDG 222
                  7999999999999999999....33333333 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.075
  Terminase_2  17 NatqAaikAgyskktArsigselLr 41 
                   a  A+++Ag s  tA++ +++ L+
   EHT98712.1 336 AAHWAYKQAGESGTTAQVRAQRWLQ 360
                  5889******************998 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.7
  Terminase_2  64 a 64 
                  a
   EHT98712.1 505 A 505
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.21s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 5743.84
//
Query:       EHT98713.1  [L=91]
Description: RNA polymerase, omega subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-17   61.6   0.0      8e-17   60.9   0.0    1.3  1  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   4.4e-21     8e-17       3      47 ..      10      59 ..       8      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4.4e-21
                  TTSS--HHHHHHHHHHHHHHH..........HTSS-SSSSTTCHHHHTT-S CS
  RNA_pol_Rpb6  3 tskvltrYelvriaakRArQieeg.e.....sletqkpvviAlrEiaegki 47
                  ++kv++r+ lv++aa+RArQ++ g +     + e++kp+viAlrEi+eg++
    EHT98713.1 10 VEKVGNRFDLVLVAARRARQMQVGgKdplvpE-ENDKPTVIALREIEEGLV 59
                  79*******************77555455433.59**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 738.38
//
Query:       EHT98714.1  [L=207]
Description: guanylate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-67  224.8   0.0      7e-67  224.6   0.0    1.0  1  Guanylate_kin    Guanylate kinase
    9.1e-05   23.0   0.0    0.00017   22.1   0.0    1.5  1  AAA_18           AAA domain
     0.0004   20.6   0.0     0.0014   18.8   0.0    1.9  1  AAA_33           AAA domain
    0.00078   19.9   0.6     0.0043   17.5   0.6    1.9  1  AAA_16           AAA ATPase domain
     0.0015   18.4   0.0     0.0023   17.8   0.0    1.3  1  CPT              Chloramphenicol phosphotransferase-like prot
     0.0022   18.2   0.3      0.026   14.8   0.3    2.3  1  AAA_22           AAA domain
     0.0028   17.6   0.1     0.0062   16.4   0.1    1.6  1  RsgA_GTPase      RsgA GTPase
     0.0054   17.3   0.0     0.0076   16.8   0.0    1.4  1  ABC_tran         ABC transporter
  ------ inclusion threshold ------
       0.05   13.7   0.0       0.12   12.4   0.0    1.8  1  MMR_HSR1         50S ribosome-binding GTPase
      0.071   13.2   0.0       0.13   12.3   0.0    1.4  1  Dynamin_N        Dynamin family
       0.12   12.1   0.0       0.16   11.7   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.17   11.5   1.2        6.4    6.3   0.1    2.2  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.6   0.0   4.7e-70     7e-67       3     182 .]       5     186 ..       3     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 224.6 bits;  conditional E-value: 4.7e-70
                    SEEEEESTTTSSHHHHHHHHHHHSTTTEE.E--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEE CS
  Guanylate_kin   3 rpvvlvgpsgaGksslkkaLlselpekfg.vsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkivi 97 
                    +++++++psgaGkssl++aLl+++p +++ vsvshtTr  r+ge++G++Y+Fv k e+ek+i++++flE+a++ +n+ygts++aie+vl++g +v+
     EHT98714.1   5 TLYIVSAPSGAGKSSLIQALLKTQPLYDTqVSVSHTTRGMRPGEAHGEHYFFVQKHEFEKMIAEDAFLEHAKVFDNYYGTSRKAIEQVLATGVDVF 100
                    689*************************77****************************************************************** PP

                    EE--CHHHHHHHHTTTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGG.CSSEEEEESSHHHHHHHHHHHHHHH CS
  Guanylate_kin  98 LDvdiqavkqlrkaelspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqey.efdvvivnddleealkklkelleae 182
                    LD+d+q+++q+r++++ ++++F+ pps++el+rrl++rg+++ee++a r+a+a +e+++y e+d++ivndd++ al++lk++++ae
     EHT98714.1 101 LDIDWQGAQQIRAKMPDARSIFVLPPSKEELDRRLRGRGQDSEEVIARRMAQAVAEMSHYgEYDYLIVNDDFDLALSDLKTIIRAE 186
                    **********************************************************************************9975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.2e-07   0.00017       2     119 ..       8     144 ..       8     155 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.2e-07
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...................gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknl..vi 79 
                 +++ ++G+GK++l ++L k   +                   + ++ + +++++ + +  ++a+ e+ ++ +++     +a+e+    l+ g ++   i
  EHT98714.1   8 IVSAPSGAGKSSLIQALLKTQPLydtqvsvshttrgmrpgeaHGEHYFFVQKHEFEKMIAEDAFLEHAKVFDNYYGTSRKAIEQV---LATGVDVflDI 103
                 57789************88874454433444444444444444444444444455555444444444444444444444444444...33333332346 PP

      AAA_18  80 dghlaeleseaakdikk.vvLtaspeelleRlekRgyeeak 119
                 d++ a+ + +++ d+   +vL  s+eel +Rl+ Rg+ + +
  EHT98714.1 104 DWQGAQQIRAKMPDARSiFVLPPSKEELDRRLRGRGQDSEE 144
                 777777777777776669******************87654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.2e-07    0.0014       7     124 ..      12     144 ..       6     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.2e-07
      AAA_33   7 lpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt...................dytrvldrlyqilnelarkalsagrnvildatnlsrre 84 
                 ++G+GKs l++ llk ++   + +s     r +++ + + +                    + ++v d+ y++ ++ ++++l+ g +v ld  +  +++
  EHT98714.1  12 PSGAGKSSLIQALLKTQPlyDTQVSVSHTTRGMRPGEAHGEHyffvqkhefekmiaedaflEHAKVFDNYYGTSRKAIEQVLATGVDVFLDIDWQGAQQ 110
                 79************9999*7666888887777777555544466777777777778888778899**************************88888877 PP

      AAA_33  85 rarflklarrlgvpvrivvvetdeetlkeRlakRaangdd 124
                  ++++  ar      +i v+ ++ e+l +Rl+ R +++++
  EHT98714.1 111 IRAKMPDAR------SIFVLPPSKEELDRRLRGRGQDSEE 144
                 777777666......89*****************997643 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   2.8e-06    0.0043      25     154 ..       5     182 ..       1     201 [. 0.52

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-06
      AAA_16  25 elvllsGesGvGKsslvrellr..alekd....................ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekl 101
                  l ++s +sG GKssl+++ll+  +l  d                    +                y  ++q  ++e+ +++ +  + ++ +       
  EHT98714.1   5 TLYIVSAPSGAGKSSLIQALLKtqPLY-DtqvsvshttrgmrpgeahgeH----------------Y-FFVQKHEFEKMIAEDAFLEHAKVF------- 78 
                 6789****************9843222.2344444444433333333321................1.122222222222211111111111....... PP

      AAA_16 102 eeala..................................................avpelagaea.......srllellkrllallsrderp.lvlvlD 142
                 +  ++                                                          ++       + +++ +++++a +s+ ++   ++v D
  EHT98714.1  79 DNYYGtsrkaieqvlatgvdvfldidwqgaqqirakmpdarsifvlppskeeldrR-------LRgrgqdseEVIARRMAQAVAEMSHYGEYdYLIVND 170
                 11111222222244446666666666666666666666777777776644444332.......224444445666666666664444433334899999 PP

      AAA_16 143 dlqwadeaslql 154
                 d++ a ++  ++
  EHT98714.1 171 DFDLALSDLKTI 182
                 999887766555 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-06    0.0023       8     153 ..      11     165 ..       4     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
                 E-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGT.......STTSEEEETTSEEE..........-HHHHHHHHHHHHHHHHHHHTT-EEEEE CS
         CPT   8 GgsssGKsslaralqevldepwlhlgvDafvealppkrqd.......eadglefeteleei..........gpeldlllaalyeavaamaraGnnvivD 89 
                   s +GKssl +al ++ +    ++ v   +  ++p   +       +++++e                   +++d  + + ++a++ ++++G +v +D
  EHT98714.1  11 APSGAGKSSLIQALLKTQPLYDTQVSVSHTTRGMRPGEAHgehyffvQKHEFE-------KmiaedaflehAKVFDNYYGTSRKAIEQVLATGVDVFLD 102
                 5688************9988888899988888899999885555555444443.......1344445677799************************** PP

                 E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS.SSTTHHHHHTTGGGT...T---SE CS
         CPT  90 dvilekewlvdllrrllsgldvllVGvrcplevlerRelergd.RepGlaalqaeavHa...gaeyDl 153
                  + +++++    +r  + + + ++V +  + e+l+rR ++rg   e  +a+  a+av +   + eyD+
  EHT98714.1 103 -IDWQGAQ---QIRAKMPDARSIFV-LPPSKEELDRRLRGRGQdSEEVIARRMAQAVAEmshYGEYDY 165
                 .8888874...55667889999998.677889999**9999963444444444444443111445665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   1.7e-05     0.026       5      33 ..       4      32 ..       1     199 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeea 33
                 ++ +v ++sG+GK+ l++ ll++ + + 
  EHT98714.1  4 GTLYIVSAPSGAGKSSLIQALLKTQPLYD 32
                67899******************987654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.2e-06    0.0062      99     142 ..       4      42 ..       1      51 [. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-06
                  TSEEEEECSTTSSHHHHHHHHCTT-----S-------------- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTt 142
                  + + ++  +SG+GKS+Li all ++ l   +vs +     hTT+
   EHT98714.1   4 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS-----HTTR 42 
                  56778889**************9988877777764.....4444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.1e-06    0.0076      10      89 ..       3      93 ..       1     158 [. 0.63

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
                TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiekal 89
                +g+++ +  ++GaGKS+L+++l++       ++ +  +   +++ e   ++  ++ q+ + f+++ +++              +s++ ie++l
  EHT98714.1  3 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRGMRPGEAHGEHY-FFVQK-HEFEKMIAEDAflehakvfdnyygTSRKAIEQVL 93
                6788888889**************9998888887775555553333322222.22222.2222221222244444444447763333333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.4e-05      0.12       8      42 ..      13      50 ..       8     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.4e-05
                TTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  8 pNvGKStLinaltge...kaivsdkpgtTrdinegrvk 42
                + +GKS+Li+al+++        +   tTr ++ g+ +
  EHT98714.1 13 SGAGKSSLIQALLKTqplYDTQVSVSHTTRGMRPGEAH 50
                579**********9744312334666888887777665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-05      0.13       9      86 ..      15      92 ..       9     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-05
                TTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS- CS
   Dynamin_N  9 sGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkekekkledfsevreeieketekiagankgi 86
                +GKSS++ aLl+ + l   +  ++ ++  ++ ge   ++  +v+++  ek   ++ f e ++ +++   ++ +a +++
  EHT98714.1 15 AGKSSLIQALLKTQPLYDTQVSVSHTTRGMRPGEAHGEHYFFVQKHEFEKMIAEDAFLEHAKVFDNYYGTSRKAIEQV 92
                8****************9999999999999999999999888888888887777777777666666666666555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.16       2      26 ..       8      34 ..       7      82 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
  Viral_helicase1  2 vvhGvpGcGKStlirkllrts..lilt 26
                     +v++  G+GKS+li+ ll+t+  ++ +
       EHT98714.1  8 IVSAPSGAGKSSLIQALLKTQplYDTQ 34
                     577778**************7753322 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0043       6.4      31      52 ..       2      23 ..       1      26 [. 0.86
   2 ?    4.2   0.1     0.019        29      80     116 ..     140     188 ..     109     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0043
      AAA_25 31 pagelallaGapgtGKttlald 52
                + g+l ++ +++g+GK+ l   
  EHT98714.1  2 AQGTLYIVSAPSGAGKSSLIQA 23
                57999************99765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.019
      AAA_25  80 EdsedelrrRlravgeal...........rddarllvldlagv.eslpL 116
                  dse+ ++rR++++ +++           +dd +l++ dl++     +L
  EHT98714.1 140 QDSEEVIARRMAQAVAEMshygeydylivNDDFDLALSDLKTIiRAERL 188
                 5889999999999999997777777777766666666666554433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 1709.32
//
Query:       EHT98715.1  [L=205]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-43  146.1  22.1    1.1e-21   76.5   7.4    2.3  2  UPF0126   UPF0126 domain
  ------ inclusion threshold ------
        1.6    8.5   0.0        1.6    8.5   0.0    3.0  4  TGBp3     Triple gene block 3
        3.2    8.3   8.2       0.33   11.4   1.3    2.4  2  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)


Domain annotation for each model (and alignments):
>> UPF0126  UPF0126 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   6.8   3.6e-25   2.2e-21       2      77 ..       5      79 ..       4      80 .. 0.96
   2 !   76.5   7.4   1.8e-25   1.1e-21       2      76 ..      91     163 ..      90     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 3.6e-25
                HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHHH CS
     UPF0126  2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvlla 77
                +l +iG+ a a++Gal+A ++++dl+gv++++ vTA+gGG +RD+llg+ +P+ +++++ y+++++++a+v+++la
  EHT98715.1  5 VLYIIGITAEAMTGALAAGRRKMDLFGVIIIASVTAIGGGSVRDILLGH-YPLGWVKHPEYIMIVAAAAVVTTFLA 79
                6889********************************************6.**********************9986 PP

  == domain 2  score: 76.5 bits;  conditional E-value: 1.8e-25
                 HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHH CS
     UPF0126   2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvll 76 
                 +lda+Gl++f+++Ga+vAl+ g  ++++++ +v+T+v+GGvlRD++++r +P+v+ +e lya +a++++++++ll
  EHT98715.1  91 VLDALGLVVFSIIGAQVALDSGHAMIIAAISAVITGVFGGVLRDMFCNR-IPLVFQKE-LYAGIAFAAGWMYILL 163
                 89**********************************************6.*****776.*************998 PP

>> TGBp3  Triple gene block 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.0      0.33     2e+03       3      14 ..      67      78 ..      64      85 .. 0.44
   2 ?   -2.4   0.3      0.66     4e+03       3      14 ..      91     102 ..      89     111 .. 0.72
   3 ?   -2.8   0.2      0.86   5.1e+03       6      14 ..     116     124 ..     113     127 .. 0.54
   4 ?    8.5   0.0   0.00026       1.6       3      32 ..     148     177 ..     142     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.33
       TGBp3  3 llaligllvall 14
                ++a++++++++l
  EHT98715.1 67 IVAAAAVVTTFL 78
                233333333332 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.66
       TGBp3   3 llaligllvall 14 
                 +l ++gl+v+ +
  EHT98715.1  91 VLDALGLVVFSI 102
                 677778888766 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.86
       TGBp3   6 ligllvall 14 
                 +i++++a++
  EHT98715.1 116 IIAAISAVI 124
                 455555544 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00026
       TGBp3   3 llaligllvallalyllntsssegCvivIT 32 
                 l+a i+  + ++ + ll+t+ ++  v++IT
  EHT98715.1 148 LYAGIAFAAGWMYILLLKTPLPHEAVVIIT 177
                 6899*************************9 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.3   5.5e-05      0.33      37      69 ..      52      83 ..      45     103 .. 0.59
   2 ?    0.1   0.6      0.18   1.1e+03      51      84 ..     157     190 ..     154     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.5e-05
        ICMT 37 ksglykylrHPnYllfvilelatllLlcnaklt 69
                 +++  +++HP Y++ v+   a++  ++ + +t
  EHT98715.1 52 GHYPLGWVKHPEYIMIVAA-AAVVTTFLAPLMT 83
                577889*********5554.3333333333222 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.18
        ICMT  51 lfvilelatllLlcnakltalvllalvalllfvR 84 
                 +++++ l   +L ++a ++ ++l+ + a ll  R
  EHT98715.1 157 GWMYILLLKTPLPHEAVVIITLLFGFFARLLALR 190
                 7888889999999999888888888877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1570.57
//
Query:       EHT98716.1  [L=317]
Description: 2-ketogluconate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-62  210.8   0.0      3e-62  210.6   0.0    1.0  1  PfkB            pfkB family carbohydrate kinase
     0.0015   17.9   0.0     0.0023   17.4   0.0    1.2  1  Phos_pyr_kin    Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.041   14.1   0.2      0.088   13.0   0.2    1.5  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6   0.0   5.1e-66     3e-62       3     301 ..      10     310 ..       8     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 5.1e-66
                 EEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT. CS
        PfkB   3 kvvviGealidliavseklegelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded. 100
                 +v  iGea+  ++a + +   +l  v+t+ k+a+Ga +NvA +larlg +v +++++G+D fG+f+ + l+ke++d++ v +d++ +tg  l     d 
  EHT98716.1  10 DVITIGEAMAMFVARETG---DLAAVETFIKRAAGAELNVAIGLARLGLKVGWVSRIGQDAFGRFICQVLDKENIDHRQVTVDPRYPTGFQLKSKVDDg 105
                 6889************99...************************************************************************999997 PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTE......EEEEECESSSHH...HHHHHHHHHCTESEEEEE CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggt......fdpnlldplgaq...fkeallellaladllkpn 190
                  +  + ++r+ +a+   ++ + d d++++a +l++sg + +++++++le++++aak++ +      fdpnl++ l+ +   ++++l  l ++ad++ p 
  EHT98716.1 106 SDPLVEYFRKGSAASHLSPEDFDHDYFGSARHLHLSG-VAAAISDSSLELTRHAAKEMRArgktisFDPNLRPVLWRSeeeMRKQLNLLAEYADWVLPG 203
                 8888999998888888888888***************.66777777777777777766666667*********************************** PP

                 HHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH CS
        PfkB 191 eeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAal 288
                 e+E  +ltg    +++++++ +     kg+k vv++ G eGa++++ ++++ +v a++  +vvDt+GAGD f+ g+++allegk+l ea+ ++n++++l
  EHT98716.1 204 EKEGYILTGYR--QPQDIADFYLD---KGVKAVVIKTGGEGAWYKTaGGEQGQVAAIKVDQVVDTVGAGDGFAVGVISALLEGKPLIEAIGRGNKIGSL 297
                 ***********..99999999888...9*********************************************************************** PP

                 HHTSSSSSTCSCC CS
        PfkB 289 vvqkkgaiaslpt 301
                 ++q +g ++ lpt
  EHT98716.1 298 AIQVSGDSEGLPT 310
                 ********99998 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.8e-07    0.0023     108     232 ..     185     299 ..     179     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.8e-07
                   HHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHH CS
  Phos_pyr_kin 108 avealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtls 204
                    +++  + L++ a+ + P  +E   L+g       + ++ a+  l+ g+kaV+ik g    e a+++    ++++v  ++ +++   +t G+G+ ++
    EHT98716.1 185 EMRKQLNLLAEYADWVLPGEKEGYILTG-----YRQPQDIADFYLDKGVKAVVIKTGG---EGAWYKTAGGEQGQVAAIKVDQVV--DTVGAGDGFA 271
                   4555556688999999999999999999.....55667778888999********997...577866666799999999988888..9********* PP

                   HHHHHHHHCTSSHHHHHHHHHHHHHHHH CS
  Phos_pyr_kin 205 saiaaelakgesleeAvkkAkeyvteai 232
                     + + l +g++l eA+ ++++  + ai
    EHT98716.1 272 VGVISALLEGKPLIEAIGRGNKIGSLAI 299
                   *****************99987655555 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.5e-05     0.088      13      40 ..     217     245 ..     212     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
                     HHHHHHHHHTT--EEEEEEBTTTB--H.H CS
  Asparaginase_C  13 tkvlkallkkgakGvvlegtGvGnlps.a 40 
                     +++ + +l+kg+k+vv++++G G++ + a
      EHT98716.1 217 QDIADFYLDKGVKAVVIKTGGEGAWYKtA 245
                     5788999*****************98742 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 2851.13
//
Query:       EHT98717.1  [L=249]
Description: epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-06   27.9   0.0    2.4e-05   23.9   0.0    2.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-09   2.4e-05     111     193 ..     115     194 ..      27     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-09
                   HHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTT..EEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESS CS
  AP_endonuc_2 111 eslneladyaekegvklalEtlagsgvelgdeelarlldavdspn..vgvclDtgHlliaeedvddalraladrikhvHikDakg 193
                   e l+ l++   ++gv l +E+    +v+ + + ++r+++a +     +g+++D g++++ +e++++a   l d +++vH+k a+ 
    EHT98717.1 115 ETLRMLIA---EYGVPLTVENDQ--TVHGKLQPMLRFFNAAREAAlpIGMTFDMGNWHWTGENPEQAAVLLTDQVGYVHVKAAVP 194
                   44444444...599*****9854..444566************9999*********************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2074.24
//
Query:       EHT98718.1  [L=341]
Description: 2-ketogluconate utilization repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-21   74.9   0.1    1.3e-19   71.2   0.1    2.1  2  Peripla_BP_3  Periplasmic binding protein-like domain
    3.4e-18   66.0   0.0    4.5e-18   65.7   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      1e-11   44.4   0.1    1.1e-10   41.1   0.0    2.3  2  LacI          Bacterial regulatory proteins, lacI family
    5.6e-10   39.2   0.0    7.3e-10   38.9   0.0    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.053   13.0   0.0       0.16   11.4   0.0    1.7  2  CbiJ          Precorrin-6x reductase CbiJ/CobK
       0.15   12.4   0.0       0.15   12.4   0.0    3.1  3  HTH_31        Helix-turn-helix domain
       0.16   12.1   0.0       0.43   10.7   0.0    1.7  1  HTH_3         Helix-turn-helix


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.12   3.1e+02       6      94 ..      62     142 ..      58     172 .. 0.73
   2 !   71.2   0.1   4.9e-23   1.3e-19       1     166 []     175     337 ..     175     337 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                   HCS.--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   6 elG.hrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalr 94 
                   ++G  r i++i    d ++++s +++ g + a+++ g++l  + ++++  ++++++ + l   ++    + ++++++   +  +vl++l+
    EHT98718.1  62 KRGrTRLIGLII--ADITNPYSVDVMCGIEAACRACGFTLLMCNTNNE-VDLEQHYLQLL--SSY----QVEGIVVNAVGMHEKVLSRLQ 142
                   455255577777..777789999**************99998877544.55666666644..222....336777766666666666665 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 4.9e-23
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE...EEEESSCCHHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalllqalklaalPt...AviaasDelAlgvlqal 93 
                   ++hL+++G+  + f++ e+     + +er+++frq l ++  + ++  +v  ++p++ + + ++   q+ +     +   Av++a+ +l l+v + l
    EHT98718.1 175 TDHLIDNGYEALLFLS-EPLGSVNTRRERLQAFRQRLaAHPAILHENAEVSLHQPDVMDTVLRDF-CQRHA-----DrrcAVMVANGALTLQVARSL 264
                   69**************.8888889*************5555555777777778887777777754.44432.....2345***************** PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   ++ +l+   d  ++gfd  e aal+   +Tt +qp+ ++G+ a+e l++++eg++ pp +++ + el++R+S+
    EHT98718.1 265 QRLNLHWGSDMGLLGFDELEWAALAGVGITTLKQPTWQIGYHALERLISRIEGHDHPPCEQVFSGELIVRGSS 337
                   *****************99999****************************************999******96 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   1.7e-21   4.5e-18       3     264 ..      68     319 ..      66     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.7e-21
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EE CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcv 98 
                    +gl++++ ++P+++d++ gi+ a ++ g+ +l+ ++++e dl+ ++++ll + +++g+++   + +   + + ++s +p++++++   +p + Pc 
    EHT98718.1  68 LIGLIIADITNPYSVDVMCGIEAACRACGFTLLMCNTNNEVDLEqHYLQLLSSYQVEGIVVNAVGMHEKVLSRLQQSLLPMVLIDRK--IP-DFPCD 161
                   59******************************************99****************9999988999999999*********..66.66775 PP

                   EE-..HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTS.HHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHH.HHHHHHTT-TT-S.EEE-SSHH CS
  Peripla_BP_1  99 ipd..dtqageestqkLiaeghkrpiallegpesal.takervqGflaalaeaGlevkdvhvalgsndiedaae.alnelleshPeid.aivainde 190
                   +    + +a+e +t +Li +g++   + l++p  +  t++er q f++ la++  +    + a++s +++d  +  l  + ++h +   a++  n  
    EHT98718.1 162 VVGlnNAEAAETATDHLIDNGYEA-LLFLSEPLGSVnTRRERLQAFRQRLAAH--PAILHENAEVSLHQPDVMDtVLRDFCQRHADRRcAVMVANGA 255
                   55433999999*************.9******88877****************..878888888888888877625688999998856855555555 PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEE CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkere 264
                     l  ++ l+  + l   ++      +++++d+L   +   l +  +++   p  ++G++a ++++  i ++ +
    EHT98718.1 256 LTLQVARSLQRLN-LHWGSDM-----GLLGFDEL---EWAALAGVGITTLKQPTWQIGYHALERLISRI-EGHD 319
                   5555599999999.9999999.....9*******...7778888889999999999*********9999.4444 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   4.4e-14   1.1e-10       1      46 []       9      55 ..       9      55 .. 0.97
   2 ?    0.6   0.0       0.2   5.1e+02       6      15 ..     286     295 ..     284     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4.4e-14
                -HHHHHHHCTS-HHHHHHHCTTS.SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk.erVseetrerVeaameelnYiPn 46
                ti DVAr+A+  k+ VSr+Ln++    s +++ r+e+a+  lnY+P+
  EHT98718.1  9 TISDVARAAKTGKTSVSRYLNGEqHLLSPDLKARIEQAISDLNYRPS 55
                8**********************8889******************97 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
                 HHHCTS-HHH CS
        LacI   6 ArlAGVSkaT 15 
                 A lAGV  +T
  EHT98718.1 286 AALAGVGITT 295
                 89*****999 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.8e-13   7.3e-10       1     220 [.      69     284 ..      69     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 2.8e-13
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   ig+++ d +np+   +  g+e+a+++ g++     +++n++  ++  ++ + + +v gi+v++v     +++l ++++   p+v +d+     +  +
    EHT98718.1  69 IGLIIADITNPYSVDVMCGIEAACRACGFTLLMC-NTNNEVDLEQHYLQLLSSYQVEGIVVNAVGM--HEKVLSRLQQSLLPMVLIDRK--IPDFPC 160
                   79999**************************997.999999**********************995..78*******************..667777 PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHH.HHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTT.T.ECEEEES CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnae.eriegfrkvlkeypgikivaeva.ganwdaekaqqalealltan.p.ldgilaa 190
                    +vg +n +a+e++ + l ++  +    ++ l+  +g+ n++ er+++fr+ l+++p i      a +   +++   + l ++ +++ +   +++ a
    EHT98718.1 161 DVVGLNNAEAAETATDHLIDNGYEA---LLFLSEPLGSVNTRrERLQAFRQRLAAHPAILHEN--AeVSLHQPDVMDTVLRDFCQRHaDrRCAVMVA 252
                   89*****************999866...888899999777776************77555444..41547***************664575677778 PP

                   SCCHHHCHHHHHHHTTT..TSTEEEEEES-HH CS
  Peripla_BP_4 191 ndgmaegalealeaagl..agkvvvtgqDatp 220
                   n++ +++++++l+  +l    ++ + g+D  +
    EHT98718.1 253 NGALTLQVARSLQRLNLhwGSDMGLLGFDELE 284
                   8999999*******999844444477776444 PP

>> CbiJ  Precorrin-6x reductase CbiJ/CobK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.1e-05      0.16      45     100 ..      45     106 ..      13     135 .. 0.78
   2 ?   -1.6   0.0      0.61   1.6e+03     179     221 ..     116     159 ..     111     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.1e-05
                 EEES--S..HHHHHHHHHHHT--E....EEE-S-TT-HHHHHHHHHHHHHHT-EEEEE---- CS
        CbiJ  45 vrvgrlg..eeglaellreekidl....vvDATHPfAaeisanaaeackelgipylrleRps 100
                   +  l+   +++a+ l++ + +l    + D T P+ + +   + +ac+++g  +l+++ ++
  EHT98718.1  45 QAISDLNyrPSQMARGLKRGRTRLigliIADITNPYSVDVMCGIEAACRACGFTLLMCNTNN 106
                 455555566788888888888777666678*************************9987665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.61
                 HHHHHTT--EEEEES--SS.TTTHHHHHHHHTT-EEEEE---....- CS
        CbiJ 179 allreykidvlVtKeSGgaGgteeKleaArelgipvivikRp....e 221
                 +ll  y+++ +V  + G +   e+ l+  ++  +p+++i+R+     
  EHT98718.1 116 QLLSSYQVEGIVVNAVGMH---EKVLSRLQQSLLPMVLIDRKipdfP 159
                 6777788888888777766...5556667778889999999865441 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05      0.15      16      51 ..       9      44 ..       5      50 .. 0.86
   2 ?   -1.7   0.0       1.5   3.8e+03      47      57 ..      88      98 ..      88     100 .. 0.81
   3 ?   -3.5   2.4       5.5   1.4e+04       5      13 ..     202     210 ..     200     275 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavleala 51
                +  +vA+++   ++ +sr+ +G++ + sp+  +++ 
  EHT98718.1  9 TISDVARAAKTGKTSVSRYLNGEQHLLSPDLKARIE 44
                7789********************999988666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
      HTH_31 47 lealaralgld 57
                +ea++ra+g +
  EHT98718.1 88 IEAACRACGFT 98
                58999999975 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.5
      HTH_31   5 lLralRera 13 
                 +L+a+R+r 
  EHT98718.1 202 RLQAFRQRL 210
                 777888775 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.43      11      35 ..       9      33 ..       9      46 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                HHHHHHHHHTSSHHHHHHHHTTSSC CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGern 35
                ++ ++A+++   ++++sr+ nGe++
  EHT98718.1  9 TISDVARAAKTGKTSVSRYLNGEQH 33
                6789******************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2877.52
//
Query:       EHT98719.1  [L=329]
Description: periplasmic binding protein/LacI family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-32  112.6   0.2      3e-32  112.2   0.2    1.1  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    1.3e-12   48.4   0.7    2.3e-12   47.6   0.2    1.6  2  Peripla_BP_3   Periplasmic binding protein-like domain
      2e-09   37.1   0.2    3.4e-09   36.4   0.2    1.4  1  LacI           Bacterial regulatory proteins, lacI family
    1.1e-05   25.1   0.3    1.6e-05   24.6   0.3    1.2  1  Peripla_BP_4   Periplasmic binding protein domain
     0.0018   18.0   0.5      0.045   13.6   0.0    3.4  4  HTH_23         Homeodomain-like domain
     0.0088   15.8   0.0      0.029   14.1   0.0    1.9  1  HTH_38         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.4   0.2       0.12   12.5   0.0    2.7  3  HTH_28         Helix-turn-helix domain
      0.021   14.8   0.1       0.12   12.4   0.1    2.2  2  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.025   14.2   0.1      0.059   13.0   0.1    1.6  1  Crp            Bacterial regulatory proteins, crp family
      0.028   13.9   0.0      0.075   12.5   0.0    1.8  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
      0.041   13.6   0.0        0.2   11.3   0.1    2.1  2  Sigma70_r4_2   Sigma-70, region 4
      0.062   12.9   0.1       0.16   11.5   0.1    1.7  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.066   13.3   0.0       0.14   12.3   0.0    1.5  1  HTH_3          Helix-turn-helix
      0.085   12.7   0.7       0.55   10.1   0.1    2.7  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.2   2.4e-35     3e-32       2     259 ..      59     307 ..      58     318 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.4e-35
                   EEEEEEES-TTSHH....HHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHHT-EEEEESS--B-TT CS
  Peripla_BP_1   2 lklglvlpqldePf....fldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliia.tsdtsfdditakaesgipvialedaidapd 93 
                   +++g+v+p +  P     f +++ ++++ ++++++d+lll ++  + + + ++ l+++ +d+lii+ t+ ++ ++++  +++g +++ l+++ da  
    EHT98719.1  59 NAVGVVYPMSAPPLsdihFNKILLALDQRLSHYDIDLLLLTDKPCDGQRSLMRMLRSRVVDALIIThTLPQD-ERLRCLQQKGFNFLSLGRT-DAQ- 152
                   589*******88888888************************************************777777.*******************.444. PP

                   TS-EEEE-.HHHHHH.HHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE- CS
  Peripla_BP_1  94 gvPcvipd.dtqage.estqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaiva 186
                       +++d d+ ag   + ++ + +g +r ia l+g+e    ++ r+qG+l+al         +  a + ++++++++ + + l ++  P+  ai++
    EHT98719.1 153 -QNHAWFDvDNAAGSaLAVKHCLTQGMQR-IAFLGGNERCTFVRDRRQGYLNALDSV----PPYATAAVAPSRRAGYQQVSAWLAEGlqPQ--AIIT 241
                   .5789***9999999899***********.************************998....67999*************************..**** PP

                   SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 187 indeaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   ++ + a Ga +al+++Grl++k+++      +++ dgL  + d i++ +++a+ q+  ++ G +++ mv+q  
    EHT98719.1 242 DSSTLAEGALMALQQAGRLQGKDAI-----TLMAWDGL--PVDAIIDFPVIAIRQASEQERGEQLATMVMQLL 307
                   *************************.....********..*******************************65 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.2   6.7e+03      27      37 ..      38      48 ..      24      78 .. 0.58
   2 !   47.6   0.2   1.8e-15   2.3e-12       1     158 [.     170     321 ..     170     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.2
                  HHHHHHHHHHH CS
  Peripla_BP_3 27 derergfrqal 37
                  ++r+rg+r  +
    EHT98719.1 38 EARRRGYRPNV 48
                  33333333333 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 1.8e-15
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalre 95 
                   v+h + +G++riaf+g  g  ++++ ++r++g+ +al +   +  + v+ + + a+++ + a+l     +  +  +P+A+i  s  lA g+l al++
    EHT98719.1 170 VKHCLTQGMQRIAFLG--GNERCTFVRDRRQGYLNALDSVPPYATAAVA-PSRRAGYQQVSAWL-----A--EglQPQAIITDSSTLAEGALMALQQ 256
                   68999***********..9******************775555555544.55566888888887.....2..2349********************* PP

                   TT--TT.TTEEEEBSS--SCCCSSSS--EEEE--HHH.HHHHHHHHHHHHHTT---S--EEE.E-- CS
  Peripla_BP_3  96 aglrvP.edlsvigfddselaalssPplTtvrqplee.lGraaaellldllegekappeqvl.lpp 158
                   ag     + + +++ d+ ++ a+ + p+ ++rq+ e+  G+++a+++++ll+g + ++ qvl   p
    EHT98719.1 257 AGRLQGkDAITLMAWDGLPVDAIIDFPVIAIRQASEQeRGEQLATMVMQLLDGAPLAQLQVLwQ-P 321
                   ******55589999******9*************98527*************999999888844.4 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.2   2.6e-12   3.4e-09       2      46 .]       3      47 ..       2      47 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.6e-12
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                +k +A   G S++TVSr Ln+ e V++ tr+rVe+ ++  +Y+Pn
  EHT98719.1  3 LKAIASVLGLSVTTVSRALNGYEDVAKHTRQRVEEEARRRGYRPN 47
                78899999************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.3   1.2e-08   1.6e-05     124     256 ..     179     309 ..     139     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.2e-08
                   EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSCCHHHCHHHHHHHTTT.TSTEE..EEEE CS
  Peripla_BP_4 124 gkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltan.pldgilaandgmaegalealeaagl.agkvv..vtgq 216
                     ++ l G+   +  ++r +g  ++l+  p + +     ++  ++  ++q+++a+l++  + ++i++ +++ aegal al++ag+ +gk++  ++++
    EHT98719.1 179 QRIAFLGGNERCTFVRDRRQGYLNALDSVPPYATA----AVAPSRRAGYQQVSAWLAEGlQPQAIITDSSTLAEGALMALQQAGRlQGKDAitLMAW 271
                   45777788888888888999999999994444433....4589**************99889***********************988887456666 PP

                   S-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 217 DatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   D+ p  ++ai d  + a+   + +e g++ + ++++ll+G
    EHT98719.1 272 DGLP--VDAIIDFPVIAIRQASEQERGEQLATMVMQLLDG 309
                   6655..5666555555455555555566666666666666 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.5e-05     0.045      19      42 ..       2      25 ..       1      38 [. 0.91
   2 ?   -2.5   0.0       3.8   4.8e+03      15      28 ..      41      54 ..      30      57 .. 0.74
   3 ?   -1.5   0.0       1.8   2.3e+03      10      23 ..      80      93 ..      79      93 .. 0.85
   4 ?    0.1   0.0       0.6   7.7e+02      30      48 ..     218     236 ..     218     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkryr 42
                s ++IA  Lg s  Tv+r l+ y+
  EHT98719.1  2 SLKAIASVLGLSVTTVSRALNGYE 25
                889*****************9994 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.8
      HTH_23 15 aeGlsvreIAreLg 28
                ++G+++  +Ar+L 
  EHT98719.1 41 RRGYRPNVAARRLK 54
                44888888888885 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.8
      HTH_23 10 illllaeGlsvreI 23
                ill+l+++ls  +I
  EHT98719.1 80 ILLALDQRLSHYDI 93
                9999**99998776 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.6
      HTH_23  30 srrTvyrwlkryreeGleg 48 
                 srr  y+ ++++ +eGl +
  EHT98719.1 218 SRRAGYQQVSAWLAEGLQP 236
                 899999999***9999875 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.3e-05     0.029      21      41 ..       1      21 [.       1      22 [. 0.95

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
      HTH_38 21 lslreIArrLgrspsTIsREl 41
                +sl++IA  Lg s +T+sR l
  EHT98719.1  1 MSLKAIASVLGLSVTTVSRAL 21
                8******************87 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.5e-05      0.12      14      37 ..       2      25 ..       1      46 [. 0.90
   2 ?   -1.8   0.1       2.8   3.5e+03      11      26 ..      42      57 ..      31      58 .. 0.73
   3 ?   -1.8   0.0       2.7   3.5e+03      29      38 ..     222     231 ..     215     237 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-05
      HTH_28 14 svreaArelgisrrtvyrWikrye 37
                s +++A  lg+s +tv+r ++ ye
  EHT98719.1  2 SLKAIASVLGLSVTTVSRALNGYE 25
                889*******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.8
      HTH_28 11 aGhsvreaArelgisr 26
                +G + + aAr+l ++r
  EHT98719.1 42 RGYRPNVAARRLKTGR 57
                5667788898887765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
      HTH_28  29 vyrWikryee 38 
                  y+ ++++ +
  EHT98719.1 222 GYQQVSAWLA 231
                 4444444444 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     9e-05      0.12      23      44 ..       2      23 ..       1      36 [. 0.86
   2 ?   -1.2   0.0       1.6     2e+03      42      65 ..     251     274 ..     249     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9e-05
                HHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilse 44
                + + +As lGl+  tvsr+l+ 
  EHT98719.1  2 SLKAIASVLGLSVTTVSRALNG 23
                6678****************85 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
                 HHHHHHTTSEE.ETEEEEES-HHHH CS
   HTH_Crp_2  42 lseLkreglis.rgrririldleaL 65 
                 l +L+++g ++ +   i++  +++L
  EHT98719.1 251 LMALQQAGRLQgKDA-ITLMAWDGL 274
                 788999999994445.999888776 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.6e-05     0.059       3      23 ..       1      21 [.       1      22 [. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
                --HHHHHHHHTS-HHHHHHHH CS
         Crp  3 mSRqdIAdylGlTrETVSRlL 23
                mS  +IA  lGl++ TVSR L
  EHT98719.1  1 MSLKAIASVLGLSVTTVSRAL 21
                88899**************87 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.9e-05     0.075      27      49 ..       1      22 [.       1      24 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-05
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  + s ka+A  lg+S tTV r+l+
    EHT98719.1  1 M-SLKAIASVLGLSVTTVSRALN 22
                  4.99****************986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00016       0.2      27      47 ..       1      21 [.       1      22 [. 0.91
   2 ?   -1.4   0.0       1.6     2e+03      17      32 ..     264     279 ..     263     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
                  --HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2 27 lsykEIAellgisegtVksrl 47
                  +s k IA++lg+s++tV ++l
    EHT98719.1  1 MSLKAIASVLGLSVTTVSRAL 21
                  799**************8876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
                   HHHHHHHTS---HHHH CS
  Sigma70_r4_2  17 eifllryleglsykEI 32 
                    +++l +++gl+ + I
    EHT98719.1 264 DAITLMAWDGLPVDAI 279
                   689999*****98765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00013      0.16      18      39 ..       1      22 [.       1      22 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      HTH_24 18 isqreLAerlglSpstvnrrlk 39
                +s + +A  lglS++tv+r l+
  EHT98719.1  1 MSLKAIASVLGLSVTTVSRALN 22
                68899**************985 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.14      10      33 ..       1      24 [.       1      31 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                HHHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGe 33
                +s++ +A +lG+s++t+sr  nG+
  EHT98719.1  1 MSLKAIASVLGLSVTTVSRALNGY 24
                799*******************95 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00043      0.55      18      36 ..       1      19 [.       1      23 [. 0.90
   2 ?   -1.3   0.1       1.6     2e+03       9      18 ..     251     260 ..     251     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00043
  HTH_AsnC-type 18 isyaeLAervGlSestvlr 36
                   +s +++A  +GlS +tv r
     EHT98719.1  1 MSLKAIASVLGLSVTTVSR 19
                   6899*************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  HTH_AsnC-type   9 LeaLqedaRi 18 
                    L aLq+ +R+
     EHT98719.1 251 LMALQQAGRL 260
                    669*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2443.91
//
Query:       EHT98720.1  [L=220]
Description: putative outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-21   76.3   0.1    2.7e-21   75.8   0.1    1.2  1  OmpA             OmpA family
    7.7e-11   41.8  15.9    1.6e-10   40.8  15.9    1.5  1  Gly-zipper_Omp   Glycine zipper
    2.9e-08   33.3  18.7      6e-08   32.3  18.7    1.5  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
    0.00019   21.2  18.3    0.00045   20.0  18.3    1.6  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.065   13.0  25.4       0.46   10.3  25.5    2.2  1  Gly-zipper_OmpA  Glycine-zipper domain
       0.29   11.3  12.2       0.64   10.2  12.2    1.6  1  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea
        6.2    6.4   8.8        8.4    6.0   8.8    1.3  1  TraT             Enterobacterial TraT complement resistance p
        8.1    7.1  15.1       0.73   10.4   1.6    2.7  2  YtxH             YtxH-like protein


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.1   1.2e-24   2.7e-21       1      95 []     115     210 ..     115     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.2e-24
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 +F++ ss+L+p+  ++l  +a +lk  p+  + v Ghtd++gs++ n+ LSq+RAe+Va++l+ +gv ++r++++g+G   pi++n+t+++ka+nr
  EHT98720.1 115 TFDSSSSSLKPAGANTLTGVAMVLKeYPKTAVNVVGHTDSTGSRALNMRLSQQRAESVASALIVQGVAADRLHTQGVGPDSPIATNSTEAGKAQNR 210
                 6************************666666***************************************************************98 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8  15.9   7.3e-14   1.6e-10       1      46 []      37      85 ..      36      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 7.3e-14
  Gly-zipper_Omp  1 iGaaiGAaaGaliGgavg...grgtGaliGAavGaavGgliGaamdkqe 46
                    +Ga++GA++Ga++G  ++   +rg+GaliGAa Gaa+Gg++G++md qe
      EHT98720.1 37 VGAGLGALVGAGVGVLSSskkDRGKGALIGAASGAALGGGVGYYMDVQE 85
                    79999999999999987778899***********************986 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3  18.7   2.7e-11     6e-08       5      46 .]      33      80 ..      30      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.7e-11
                     XXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXX-H CS
  Gly-zipper_YMGG  5 rGAaiGAaaGAvvGaliG......sgggkGAaiGAaaGalaGgaiGaq 46
                     ++ ++GA++GA+vGa +G      +++gkGA+iGAa Ga+ Gg +G++
       EHT98720.1 33 GKSGVGAGLGALVGAGVGvlssskKDRGKGALIGAASGAALGGGVGYY 80
                     5667788888888888888888************************97 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  18.3     2e-07   0.00045       1      42 []      37      78 ..      37      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
  Rick_17kDa_Anti  1 vGaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnaig 42
                     vGa +GA++G+ +G + +++++r  Ga++GAa Ga++G+ +g
       EHT98720.1 37 VGAGLGALVGAGVGVLSSSKKDRGKGALIGAASGAALGGGVG 78
                     69***************6668888888888888888888665 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  25.5   0.00021      0.46       3      43 ..      34      77 ..      32      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
  Gly-zipper_OmpA  3 gAavGAalGAaaGAavGai...tGsaGtGAaiGAasGavaGllr 43
                     +++vGA+lGA+ GA vG     + + G+GA iGAasGa  G+ +
       EHT98720.1 34 KSGVGAGLGALVGAGVGVLsssKKDRGKGALIGAASGAALGGGV 77
                     67899999999999877542226689*************99876 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  12.2   0.00029      0.64      22      60 ..      33      79 ..      19      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00029
  Bacteriocin_IIc 22 qgtvggivggalaGaatGaa........tlgilgaavGavvGavvGa 60
                      + + g+++gal Ga++G+          + ++gaa+Ga++G+ vG 
       EHT98720.1 33 GKSGVGAGLGALVGAGVGVLssskkdrgKGALIGAASGAALGGGVGY 79
                     5778899********************9999************9985 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.8    0.0037       8.4      85     156 ..      33      96 ..      21     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0037
        TraT  85 lkaGfggalagaaagaaigaanggsagaalggglvGglvgaiagalvedvtYlmvvDvqikekakgvvkqss 156
                  k+G  ga+ ga +ga++g + ++s ++ + g+l+G++ ga++g  v   +Y+ v   ++++k+    k + 
  EHT98720.1  33 GKSG-VGAGLGALVGAGVGVL-SSSKKDRGKGALIGAASGAALGGGV--GYYMDVQEAKLRDKM----KGTG 96 
                 4556.4567899999999999.89999999999*******9999765..466655555566555....3333 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6   0.00032      0.73       3      22 ..      38      57 ..      36      59 .. 0.91
   2 ?    1.4   6.1       0.2   4.6e+02       2      15 ..      61      74 ..      60     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        YtxH  3 glliGaavGaaaglLlAPks 22
                g+ +Ga+vGa++g+L + k+
  EHT98720.1 38 GAGLGALVGAGVGVLSSSKK 57
                899*************9998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
        YtxH  2 lglliGaavGaaag 15
                +g+liGaa Gaa+g
  EHT98720.1 61 KGALIGAASGAALG 74
                58999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1682.73
//
Query:       EHT98721.1  [L=186]
Description: 3-methyl-adenine DNA glycosylase I, constitutive [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-77  259.7   0.1    1.3e-77  259.6   0.1    1.0  1  Adenine_glyco  Methyladenine glycosylase


Domain annotation for each model (and alignments):
>> Adenine_glyco  Methyladenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.1   7.3e-82   1.3e-77       1     177 []       6     182 ..       6     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 7.3e-82
  Adenine_glyco   1 wankdplyvaYhDeeWGvpvtddkklFelLvLegfqaglswetilkkreafreafdgFdlekvakydeekveelladegiirnrlKieavisnAra 96 
                    w+++dply+aYhD+eWG+ ++d+ +lFe+L+Leg+qaglsw+t+lkkre++r+af++Fd+++va +++++v +l++++g+ir+  Ki a+i+nAra
     EHT98721.1   6 WVTQDPLYLAYHDNEWGRAQRDKLALFEMLCLEGQQAGLSWITVLKKRENYRAAFHQFDPHAVALMNDQDVVQLMQNSGVIRHPGKIAAIIANARA 101
                    99********************************************************************************************** PP

  Adenine_glyco  97 vlalqeefgsfseylwsfvdgkpiveelksaeevpattelsealskdLkkrGfkfvGptivysflqavGlvndhleeCfrk 177
                    +la+++e ++f++++w+fv ++piv+++++ ++ p+t++++ alsk+Lk+rGfkf+Gpti+ysf+qa+Gl+ndh+++Cf++
     EHT98721.1 102 MLAMEAEGEDFAHFVWQFVANQPIVHHYADYKQSPTTSPQAIALSKALKTRGFKFIGPTICYSFMQACGLINDHQTNCFCH 182
                    ******************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1601.98
//
Query:       EHT98722.1  [L=201]
Description: hypothetical protein CKS_4325 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1705.45
//
Query:       EHT98723.1  [L=178]
Description: DNA biosynthesis protein (primosomal protein I) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-24   85.4   1.3    2.7e-24   84.7   1.3    1.4  1  DnaT      DnaT DNA-binding domain


Domain annotation for each model (and alignments):
>> DnaT  DnaT DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   1.3   1.5e-28   2.7e-24       1      70 [.      87     157 ..      87     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 1.5e-28
        DnaT   1 famtadWqPsedfleilalag.aidedftedelaeFilYWrergkvetqaqWnqkFvqhvkrqwaraqsse 70 
                 fam+++WqP++df +++a++g a++e++t++ela+F++YW+++g+ ++++qW+qk++++++ ++a++++++
  EHT98723.1  87 FAMYDGWQPDADFTRQAAIWGvALSEPVTAAELAAFVAYWQAEGRLFHHVQWQQKLARSLQMNRAANGGQP 157
                 89*******************99******************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 1684.37
//
Query:       EHT98724.1  [L=246]
Description: DNA biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-18   66.2   0.0    4.9e-18   65.5   0.0    1.3  1  IstB_IS21        IstB-like ATP binding protein
      5e-05   23.3   0.0    6.2e-05   22.9   0.0    1.2  1  Bac_DnaA         Bacterial dnaA  protein
    6.9e-05   23.3   0.0    0.00011   22.6   0.0    1.4  1  AAA              ATPase family associated with various cellul
    0.00032   20.0   0.3      0.025   13.8   0.3    2.1  1  PIF1             PIF1-like helicase
    0.00038   20.2   0.0    0.00073   19.3   0.0    1.5  1  AAA_30           AAA domain
     0.0078   15.2   0.1      0.015   14.3   0.1    1.4  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.054   13.2   0.0    1.7  1  Sigma54_activat  Sigma-54 interaction domain
      0.039   13.4   0.0      0.065   12.7   0.0    1.4  1  PhoH             PhoH-like protein
      0.047   13.4   0.2       0.19   11.4   0.2    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.051   12.7   0.0       0.08   12.1   0.0    1.3  1  ArsA_ATPase      Anion-transporting ATPase
       0.18   11.6   0.1          3    7.6   0.0    2.1  2  AAA_11           AAA domain
        0.2   11.8   0.0       0.32   11.1   0.0    1.4  1  Torsin           Torsin
       0.21   11.5   1.0        2.3    8.1   0.4    2.3  2  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   3.5e-21   4.9e-18      24     163 ..      74     219 ..      51     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 3.5e-21
   IstB_IS21  24 fraarsldkrkvkeL..atlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra...rrdgklaralkrllkvdllilDdl 117
                 +r +++ +++++++    + +f  + +++v+ G +G+GK hla+a+g + + +g+svl v+v+dL++++k      +d   +r ++ l  vdll++D++
  EHT98724.1  74 YRVENEGQRKALEQArqYAANFEGNIASFVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTVADLMSSMKGTfsgSSDITEERLIQDLSSVDLLVIDEI 172
                 4444445555555441245688899999*****************************************965222567778999*************** PP

   IstB_IS21 118 gllpldqaeaellfeviekry.errsiiitsnlpfaewdevlgdatl 163
                 g++  ++ e+  + +++++r   +r++ + +nl     +++lg+ ++
  EHT98724.1 173 GMQSESRYEKVIINQIVDRRSsSKRPTGMLTNLDPTGMNALLGERVM 219
                 ******************99625889999999999999999887766 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.5e-08   6.2e-05       5     113 ..      69     179 ..      65     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.5e-08
                 -SGGG-.---TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHH...TT-HHHHHHHHTT-S CS
    Bac_DnaA   5 ytFetF.viGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalr...dkkaeefkeklrkvD 99 
                   F+++ v+ ++ r Al+ a++ a + + +   +++ g  G Gk HL  aign ++ +   + v+ +t  + ++++  +     d + e++ + l +vD
  EHT98724.1  69 CSFDNYrVENEGQRKALEQARQYAANFEGNIASFVFAGRPGTGKNHLAAAIGNDLILR--GKSVLIVTVADLMSSMKGTFSgssDITEERLIQDLSSVD 165
                 5799987899999*************9999***********************99865..556777777777777766654111567788999****** PP

                 EEEEE-GGGGTT-H CS
    Bac_DnaA 100 vLliDDiqflagke 113
                 +L+iD+i   ++  
  EHT98724.1 166 LLVIDEIGMQSESR 179
                 ******97655444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     8e-08   0.00011       2      92 ..     103     191 ..     102     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 8e-08
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHH.HHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfke.akekakpsilfiDEidalaksrsgseseeeervvnqLlte 92 
                 ++ G pGtGK  la a+ ++l   g ++l + +++l+s++ g  + +   + ++ ++  ++   l+iDEi    +sr       e+ ++nq++  
  EHT98724.1 103 VFAGRPGTGKNHLAAAIGNDLilrGKSVLIVTVADLMSSMKGTFSGSSDITEERlIQDLSSVDLLVIDEIGMQSESR------YEKVIINQIVDR 191
                 689*****************9777899**********77444444444444444223333458*******9999888......666666666554 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   1.8e-05     0.025       3     122 ..      78     183 ..      77     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                 -HHHHHHHHHH......HCTS..-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHHHHHTSCCCHHH CS
        PIF1   3 neeQkkvfdaiieavlnekgk..lfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrtahsrfkiplekdeestckikrgsklael 99 
                 ne Q+k+++++ + + n +g+  +f + G  GtgK  l  a+ + l  +gk vl v  + + + +  +G+     f    +++ee          l + 
  EHT98724.1  78 NEGQRKALEQARQYAANFEGNiaSFVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTVADLMSSM--KGT-----FSGSSDITEER---------LIQD 160
                 6789999999988888766652268899**************************99866555443..233.....33333444433.........3466 PP

                 HHC-SEEEEECGGGSBHHHHHHH CS
        PIF1 100 lkktsliiwDEapmverecfeal 122
                 l+ ++l+++DE+ m + + +e++
  EHT98724.1 161 LSSVDLLVIDEIGMQSESRYEKV 183
                 77777777777777777777764 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.3e-07   0.00073       6     108 ..      87     183 ..      77     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.3e-07
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkq 104
                 Qa+  +a  +++    v  G++GtGK ++ +a+ + +  +g++v++++    ++  ++  +   ++ +++ l      ++l++ +ll++DE+gm + + 
  EHT98724.1  87 QARQYAANFEGNIASFVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTVADLMS-SMKGTFSGSSDITEERL-----IQDLSSVDLLVIDEIGMQSESR 179
                 3333333333444456899**************888888999999998876665.45555555565555544.....2345567***********9988 PP

      AAA_30 105 laal 108
                  +++
  EHT98724.1 180 YEKV 183
                 8776 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.1e-05     0.015      26      73 ..      96     144 ..      75     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                 -S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE.-------- CS
        MeaB  26 aGraqvvGltGvPGaGkstlvealglelrrrGkrvavlav.DPsspftG 73 
                  G+     + G PG+Gk  l  a+g  l+ rGk v ++ v D  s+++G
  EHT98724.1  96 EGNIASFVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTVaDLMSSMKG 144
                 5777888899***************************998455555554 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.9e-05     0.054       3      81 ..      80     149 ..      77     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-05
                      --SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTT CS
  Sigma54_activat   3 gesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGA 81 
                      g+++al+++++ ++++  + +s +  G  GtGK+ la ai +    + k+++ v +a++ ++          kG+F+G+
       EHT98724.1  80 GQRKALEQARQYAANFEGNIASFVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTVADLMSS---------MKGTFSGS 149
                      567788888888888888889*******************9988888888888888875433.........35555555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05     0.065      10      55 ..      89     135 ..      75     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                 HHHHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE CS
        PhoH  10 keylealk.kndivfaiGpaGtGKtylavalavealkkkkvkriilt 55 
                 ++y+ + + +    + +G+ GtGK +la a++ +++ ++k   i+ +
  EHT98724.1  89 RQYAANFEgNIASFVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTV 135
                 34444455444456678*****************9999887777665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00014      0.19      18      95 ..      84     174 ..      70     192 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      RuvB_N  18 klkifieaakkreealdhvllyGpPGlGkttlakiiakel....gvklkitsgPvlek.......agdlaa..lltnleekdvlfideihr 95 
                  l+ + + a + e ++   +++G PG Gk  la+ i ++l    ++ l +t +  ++        ++d++   l+++l++ d+l idei  
  EHT98724.1  84 ALEQARQYAANFEGNIASFVFAGRPGTGKNHLAAAIGNDLilrgKSVLIVTVADLMSSmkgtfsgSSDITEerLIQDLSSVDLLVIDEIGM 174
                 455555556666677778899*****************98333222233444444432111111156776344888999999999999865 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.8e-05      0.08       4      71 ..     102     176 ..      99     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-05
                  EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-.STTTHHHHHHTS--B.SS-EEET.....SSEEEEE--HHH CS
  ArsA_ATPase   4 ilvgGKGGVGKttvsaatavklsekgkkvllist.DPAhslsDsfdqklg.keptkvk.....eNLsavEidpev 71 
                  ++++G+ G GK  ++aa++  l   gk+vl++++ D   s+   f+      e++ ++     + L++ Ei ++ 
   EHT98724.1 102 FVFAGRPGTGKNHLAAAIGNDLILRGKSVLIVTVaDLMSSMKGTFSGSSDiTEERLIQdlssvDLLVIDEIGMQS 176
                  689*****************************9548888888888764441344444444454455555555554 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0022         3       3      42 ..      78     124 ..      77     149 .. 0.78
   2 ?    1.7   0.1      0.14   1.9e+02     208     231 ..     155     177 ..     144     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0022
      AAA_11   3 ndsqreaiksalsese.......itliqGPPGtgKTktivellsqll 42 
                 n+ qr+a+++a +  +        +++ G PGtgK +  +++ + l+
  EHT98724.1  78 NEGQRKALEQARQYAAnfegniaSFVFAGRPGTGKNHLAAAIGNDLI 124
                 788999997776666666778887899*********99988877775 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
      AAA_11 208 sklleklakkfdvviIDEAaqavE 231
                 ++l+++l   +d+++IDE ++  E
  EHT98724.1 155 ERLIQDLS-SVDLLVIDEIGMQSE 177
                 56677775.9********998766 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.32      57      86 ..     103     132 ..      84     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                 EEEE-TTSSHHHHHHHHHHHHSTTGGGSTT CS
      Torsin  57 sfhGwtGtGknfvaeiiaenlyrdGlrsdy 86 
                  f G +GtGkn++a  i ++l  +G    +
  EHT98724.1 103 VFAGRPGTGKNHLAAAIGNDLILRGKSVLI 132
                 689*****************9999976555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.18   2.5e+02       3      25 ..     103     125 ..     101     137 .. 0.79
   2 ?    8.1   0.4    0.0016       2.3      88     121 ..     156     188 ..     144     196 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.18
                 EEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellks 25 
                 +  G+pG+GK  l   + + l  
  EHT98724.1 103 VFAGRPGTGKNHLAAAIGNDLIL 125
                 678*******9999988777755 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHH-EEEE---STTGGG-HHHHHHHHHH CS
    NTPase_1  88 alrkalseadviviDEiGkmElkskkfkeaveev 121
                  l + ls+ d++viDEiG m  +s+  k  ++++
  EHT98724.1 156 RLIQDLSSVDLLVIDEIG-MQSESRYEKVIINQI 188
                 455566899*********.555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1763.14
//
Query:       EHT98725.1  [L=377]
Description: transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-38  133.3   0.0    1.6e-38  132.9   0.0    1.2  1  ROK             ROK family
    0.00011   21.6   0.2    0.00032   20.2   0.2    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00018   21.4   1.7    0.00047   20.0   0.2    2.5  3  MarR_2          MarR family
    0.00018   21.3   0.2    0.00049   20.0   0.2    1.7  1  MarR            MarR family
    0.00024   21.0   0.3    0.00062   19.7   0.3    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0012   18.9   0.0     0.0024   17.9   0.0    1.4  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
     0.0024   17.8   0.1     0.0051   16.7   0.1    1.6  1  HTH_36          Helix-turn-helix domain
     0.0038   17.7   0.0     0.0086   16.6   0.0    1.5  1  HTH_27          Winged helix DNA-binding domain
     0.0083   16.3   0.0      0.017   15.3   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0085   15.9   0.1      0.033   14.0   0.1    2.1  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   13.7   0.1       0.07   12.6   0.1    1.6  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.052   13.5   0.2       0.13   12.2   0.2    1.7  1  HTH_11          HTH domain
      0.063   13.3   0.3       0.15   12.1   0.3    1.7  1  HTH_3           Helix-turn-helix
      0.075   12.7   0.1       0.24   11.1   0.0    1.9  2  Crp             Bacterial regulatory proteins, crp family
       0.11   12.0   0.2       0.21   11.1   0.2    1.5  1  Sigma70_r4      Sigma-70, region 4


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   1.4e-41   1.6e-38      14     260 ..      98     339 ..      86     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.4e-41
                 EEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS-EEEEEHHHHHHHH CS
         ROK  14 alvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvpvevenDvnaaala 112
                  + d  +++la++ + t t+++ ++l + i++l +++ ++   l ++g+g+pG++++ +g  +   +++w+n+dl+++l +++ +p+++ n+v+aaal 
  EHT98725.1  98 QICDYFSQTLAEQTIRTDTSKPGPIL-AEIGALCEKLMEAWPGLLGIGLGFPGVVDSRRGWMHLSTHLGWQNVDLASDLRKQIALPIRIMNNVRAAALL 195
                 566777899******66666666666.9*********************************************************************98 PP

                 HHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTCCGTTS-HHHHHHHHCTT-HHH CS
         ROK 113 EavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqqkgekleakeiiklaekgdeva 211
                   +  +    +  +y+++  G+G++ ++ g ++tG++ +age+GH++++p+g++c+C +qgClE+++s +a+++++ q++ +l+ ++         +v 
  EHT98725.1 196 SVQQLNLPAESGHFYLRIAEGIGGALVQHGVVFTGNSWTAGEAGHLTVQPNGPRCSCNRQGCLEAMISKPAINQQLAQRQPGLTWHS----RDSAPNVV 290
                 8887777778889*****************************************************************999999998....23344588 PP

                 HHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHH CS
         ROK 212 eevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkk 260
                 +ev++  ++yl++a+ +++ l++p  i++    s ++ + +a+ +++++
  EHT98725.1 291 NEVMQLAGNYLGIALSQIMLLLNPATIIIDCPWSVSPTFCQAVLNQTQA 339
                 99***************************99998888888666555543 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   2.7e-07   0.00032      18      47 ..      29      58 ..      13      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.7e-07
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlI 47
                +s ++LA+ l lS++tv++ ++ L e+G++
  EHT98725.1 29 TSRQDLAQVLALSKNTVSQIIDDLLENGWV 58
                7899*************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   3.9e-07   0.00047      23      53 ..      30      60 ..      10      71 .. 0.82
   2 ?   -3.2   0.0       7.1   8.5e+03      33      43 ..     262     272 ..     259     273 .. 0.82
   3 ?   -2.0   0.1       2.9   3.4e+03       4      32 ..     335     363 ..     334     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.9e-07
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLver 53
                + ++la+ l lsk +vs+i+++L + G+v++
  EHT98725.1 30 SRQDLAQVLALSKNTVSQIIDDLLENGWVQE 60
                679**************************75 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.1
                 SSHHHHHHHHH CS
      MarR_2  33 lsksavsrilk 43 
                 +sk+a+++ l+
  EHT98725.1 262 ISKPAINQQLA 272
                 89****99886 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.9
                 -HHHHHHHHHHHCTTTSEEEHHHHHHHHT CS
      MarR_2   4 tpaqarvLaaLgrrpgrdltvgelarrlg 32 
                 + +qa  La+++++    + ++ la ++g
  EHT98725.1 335 NQTQANKLAFIAAHTQVHFLQSHLAPATG 363
                 56788889999999876667887776666 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   4.1e-07   0.00049       4      48 ..      15      59 ..      14      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.1e-07
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                +q +++++l++    s ++La  l +sk tv+ ++d L ++G+++
  EHT98725.1 15 NQKRVMAQLRQLRITSRQDLAQVLALSKNTVSQIIDDLLENGWVQ 59
                57789999999999999**************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   5.2e-07   0.00062      18      55 ..      24      63 ..       9      70 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.2e-07
                EEEE.HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETE CS
   HTH_Crp_2 18 ielp.ltqeelAsmlGltretvsrilseLkreglis.rgr 55
                 +l+  ++++lA+ l l+  tvs+i+ +L + g+++  g+
  EHT98725.1 24 RQLRiTSRQDLAQVLALSKNTVSQIIDDLLENGWVQeLGK 63
                3344269****************************96564 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     2e-06    0.0024      10      47 ..      26     297 ..      18     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2e-06
                    HT-SSCHHHHCCTT--HHHHH........................................................................... CS
  Phage_CI_repr  10 ygvkmqkeLAdlLgiakssvs........................................................................... 30 
                    + + ++++LA+ L  +k +vs                                                                           
     EHT98725.1  26 LRITSRQDLAQVLALSKNTVSqiiddllengwvqelgkasvssagrpkihitlrpeklvsagimveknlihwqicdyfsqtlaeqtirtdtskpgp 121
                    56889******************************************************************************************* PP

                    ................................................................................................ CS
  Phage_CI_repr  31 ................................................................................................ 30 
                                                                                                                    
     EHT98725.1 122 ilaeigalceklmeawpgllgiglgfpgvvdsrrgwmhlsthlgwqnvdlasdlrkqialpirimnnvraaallsvqqlnlpaesghfylriaegi 217
                    ************************************************************************************************ PP

                    .............................................................HHHHSSS--..HHHHHHHH CS
  Phage_CI_repr  31 .............................................................twvrRdffP..gdvvvtca 47 
                                                                                 tw +Rd+ P     v+++a
     EHT98725.1 218 ggalvqhgvvftgnswtageaghltvqpngprcscnrqgcleamiskpainqqlaqrqpglTWHSRDSAPnvVNEVMQLA 297
                    **********************************************************************6666677766 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   4.3e-06    0.0051      27      55 .]      30      58 ..      12      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.3e-06
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                s ++la+ l+lsknTvs +i+ L + G++
  EHT98725.1 30 SRQDLAQVLALSKNTVSQIIDDLLENGWV 58
                6789************************6 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.2e-06    0.0086      11      53 ..      22      63 ..      14      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.2e-06
      HTH_27 11 lirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgd 53
                ++r ++r  +  dl+++l +++ ++s +++ L e+G+v++ g+
  EHT98725.1 22 QLR-QLRITSRQDLAQVLALSKNTVSQIIDDLLENGWVQELGK 63
                455.88888999**************************88766 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-05     0.017      21      53 ..      27      59 ..      20      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
                    SSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 21 kvvktkdlaerLnvspssVsemlkkLekdGyve 53
                     + +++dla++L+ s+ +Vs+ +  L ++G v+
      EHT98725.1 27 RITSRQDLAQVLALSKNTVSQIIDDLLENGWVQ 59
                    567899************************996 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.8e-05     0.033      22      50 ..      32      60 ..      18      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyveq 50
                ++lA+ ++l+k tv+ ++  L e G+v+ 
  EHT98725.1 32 QDLAQVLALSKNTVSQIIDDLLENGWVQE 60
                79*************************86 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.8e-05      0.07      22      51 ..      24      52 ..      17      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.8e-05
  HTH_Tnp_ISL3 22 elllesrsvkavArqlgvSwtTVwrildry 51
                  ++l+ + s+++ A+ l +S +TV  i+d++
    EHT98725.1 24 RQLRIT-SRQDLAQVLALSKNTVSQIIDDL 52
                  567777.*********************97 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00011      0.13       2      43 ..      16      56 ..      15      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      HTH_11  2 llqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                ++ ++ +L++ r   s ++LA+ L +S+ tv + I++L e g
  EHT98725.1 16 QKRVMAQLRQLRI-TSRQDLAQVLALSKNTVSQIIDDLLENG 56
                5677888988886.799*********************8887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00013      0.15       2      29 ..      21      48 ..      20      50 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                HHHHHHTTHHHHHHHHHHTSSHHHHHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisri 29
                ++lR+ +  s+++LA++l +s++t+s+i
  EHT98725.1 21 AQLRQLRITSRQDLAQVLALSKNTVSQI 48
                689************************9 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.24       4      30 ..      30      56 ..      29      57 .. 0.88
   2 ?   -3.0   0.1         5     6e+03       9      15 ..     298     304 ..     298     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                -HHHHHHHHTS-HHHHHHHHHHHHHTT CS
         Crp  4 SRqdIAdylGlTrETVSRlLtrLrekG 30
                SRqd+A  l+l+  TVS    +L e+G
  EHT98725.1 30 SRQDLAQVLALSKNTVSQIIDDLLENG 56
                9****************8777777665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5
                 HHHHTS- CS
         Crp   9 AdylGlT 15 
                 ++ylG +
  EHT98725.1 298 GNYLGIA 304
                 79***76 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00018      0.21       2      45 ..      10      53 ..       9      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHH CS
  Sigma70_r4  2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAl 45
                L +L+ + r   +lr ++  + ++++++l +S+ +V+qi+ + l
  EHT98725.1 10 LMRLNNQKRVMAQLRQLRITSRQDLAQVLALSKNTVSQIIDDLL 53
                6667777777778888999999*****************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2723.71
//
Query:       EHT98726.1  [L=318]
Description: LacI family regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-18   66.2   0.7    3.7e-18   65.0   0.7    1.7  1  LacI          Bacterial regulatory proteins, lacI family
    9.3e-10   39.1   0.0    2.1e-09   37.9   0.0    1.6  1  Peripla_BP_3  Periplasmic binding protein-like domain
      0.001   19.4   0.1      0.002   18.4   0.1    1.5  1  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.055   13.5   0.0       0.13   12.3   0.0    1.6  1  HTH_3         Helix-turn-helix
      0.066   13.0   0.2          3    7.8   0.0    2.7  2  HTH_23        Homeodomain-like domain
      0.078   12.7   0.1        7.6    6.4   0.1    2.8  2  HTH_38        Helix-turn-helix domain
       0.09   12.6   0.1       0.36   10.7   0.0    2.1  2  HTH_IclR      IclR helix-turn-helix domain
       0.15   11.5   0.2       0.33   10.4   0.2    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.7   1.7e-21   3.7e-18       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.7e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti+DV rlAGVSkaTVSrvL++++ V+e+ r  V++a++elnY+Pn
  EHT98726.1  3 TINDVSRLAGVSKATVSRVLSGSRGVKEASRAAVLKAVDELNYRPN 48
                8********************************************9 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   9.5e-13   2.1e-09       2     143 ..     162     296 ..     161     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 9.5e-13
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SE....EEEESSCCHHHHHHHHH CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPt....AviaasDelAlgvlqal 93 
                   ++L+++  r+ia+i    + g  ++d+++ g+++ale++ lp+n+ +v  d++++  a+++   l +a+      t    A+++a++++A++v+ +l
    EHT98726.1 162 NYLISQNRRQIALIH---PEGMGFADQVLLGYKHALEKNFLPFNRNLVFMDTSSSSVALQEL--LnNAC------TlnfnALLVADEQQAQKVIPQL 247
                   5899***********...555669***************************99888887774..43444......33344***************** PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldl 143
                   ++ + +vP+d+ v+++ ++       P + +++  ++ ++ +++++l ++
    EHT98726.1 248 QAFNKQVPKDIMVFSLAGTLD-LPGIPTIPAISYSMDAMAARIVKALNQQ 296
                   ***************886322.3334555799999999999999999776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   8.8e-07     0.002      18      54 ..       5      40 ..       3      52 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.8e-07
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrpspavlealaral 54
                 +v +++gvs++t+sr+ +G rg +++a  +a++ a+
  EHT98726.1  5 NDVSRLAGVSKATVSRVLSGSRG-VKEASRAAVLKAV 40
                6899******************9.8555555544443 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05      0.13      11      34 ..       3      26 ..       2      48 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                HHHHHHHHHTSSHHHHHHHHTTSS CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGer 34
                ++ ++++++Gvs++t+sr  +G r
  EHT98726.1  3 TINDVSRLAGVSKATVSRVLSGSR 26
                66799*****************55 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0013         3      20      39 ..       4      23 ..       2      29 .. 0.87
   2 ?    2.4   0.0     0.066   1.5e+02       4      27 ..      30      54 ..      27      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
      HTH_23 20 vreIAreLgvsrrTvyrwlk 39
                + +++r+ gvs+ Tv+r+l+
  EHT98726.1  4 INDVSRLAGVSKATVSRVLS 23
                66899************986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.066
      HTH_23  4 ereRlrillllae.GlsvreIAreL 27
                e  R+ +l++++e  +++  IA+ L
  EHT98726.1 30 EASRAAVLKAVDElNYRPNVIAQSL 54
                5669*********999999999866 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0034       7.6      22      41 ..       3      22 ..       2      23 .. 0.90
   2 ?    3.2   0.0     0.035        78       7      24 ..     166     183 ..     161     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0034
      HTH_38 22 slreIArrLgrspsTIsREl 41
                ++ ++ r+ g+s+ T+sR l
  EHT98726.1  3 TINDVSRLAGVSKATVSRVL 22
                678899************97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.035
      HTH_38   7 leeReeIerllaeGlslr 24 
                  ++R++I+  + eG++++
  EHT98726.1 166 SQNRRQIALIHPEGMGFA 183
                 689************997 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.36      20      40 ..       3      23 ..       1      24 [. 0.90
   2 ?   -2.2   0.0       1.7   3.7e+03       5      18 ..     286     299 ..     286     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                t+ +++r +g++k+tv+R L+
  EHT98726.1  3 TINDVSRLAGVSKATVSRVLS 23
                789***************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHCT-CTTBSS CS
    HTH_IclR   5 alaiLdalaeapqe 18 
                 a++i +al++++q 
  EHT98726.1 286 AARIVKALNQQTQS 299
                 78999999999985 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00015      0.33      28      48 ..       2      22 ..       1      23 [. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwril 48
                   ++ +v+r+ gvS  TV r+l
    EHT98726.1  2 STINDVSRLAGVSKATVSRVL 22
                  499****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2447.14
//
Query:       EHT98727.1  [L=46]
Description: hypothetical protein CKS_4330 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 399.07
//
Query:       EHT98728.1  [L=104]
Description: PTS system cellobiose-specific IIB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-19   67.8   0.0    1.1e-18   67.7   0.0    1.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   6.2e-23   1.1e-18       1      89 [.       3      94 ..       3      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 6.2e-23
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGG..CTHHHHTT...SEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrv..kdlarfag...kpvavinikdalgimdgekvlk 89
                +i+l+C+aGm+tS+++  k+ ++a+++g+ ++++a   +e +    ++++vll+pqv++  + l+++a+   +pv  i+++d +g++ g++vl+
  EHT98728.1  3 RIMLCCSAGMSTSMLV-RKMVEVADQRGLAVQIDAWGIAEFDTQFPTYQVVLLGPQVKYmlNTLSEKAAtygIPVRAIDMTD-YGMQRGDNVLD 94
                69**************.***********6555555554455666666**************888888888889*********.*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.31
# Mc/sec: 1006.22
//
Query:       EHT98729.1  [L=445]
Description: PTS system cellobiose-specific IIC component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-50  169.8  28.3    1.1e-49  169.2  28.3    1.3  1  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2  28.3   6.2e-54   1.1e-49       1     323 [.      33     351 ..      33     352 .. 0.94

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 6.2e-54
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiaygl..akggkgvaglagligllafnllaais 97 
                 +dgf++++p+ i+g+++l++++ p+s+d+++    ++ ++  ++ + l+ ++ ++++++  ++++gi+ +l  + + ++++  +gl++++af l     
  EHT98729.1  33 RDGFTAALPFMIIGSFMLVFIFPPFSADTTNSFARAWLDFSVTYRQQLMLPFHLSMGVMTFFISVGIGASLgrQFNLDPIM--SGLLAFMAFLL----- 124
                 69***********************99999987799***********************************7777778888..99999999999..... PP

    PTS_EIIC  98 vlllaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg..l 193
                 v++++a+        i+  ++ ++g+f+a++ ++ a+ +y+++++ n+ti+LP+++p  v+ +f ++i++l v++ +   l+l+++a +g+++ +   +
  EHT98729.1 125 VAAPYAD------EKISTQYLSGQGIFTALVTAIYATRVYAWLKQhNVTIRLPKEVPTGVARSFEILIPVL-VIIGTLHPLNLFIEAKTGMIIPQAimH 216
                 4444555......5899******************************************************.777778999999999999999987763 PP

    PTS_EIIC 194 l....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskqkk 286
                 l    + +s+sl ++l+  +l++++++ G+H+a+i++ ++++++ ++ +anq+++ ag  ++h+  ++f++    +Gg+g tl l++  +l+++  +++
  EHT98729.1 217 LleplVSASDSLPAILLSVLLCQIFWFAGIHGALIVTGIMNPFWMANLSANQAALAAGAALPHVYLQGFWDhyLLIGGVGSTLPLAF-LLLRSRVLHLR 314
                 36888*********************************************************************************9.888899***** PP

    PTS_EIIC 287 llgsaaltpflfGItepleFgfpfvlnlllfipalla 323
                 ++g++ ++p +f+I+ep++Fg p+++n+llfip++  
  EHT98729.1 315 TIGKMGVVPSFFNINEPILFGAPIIMNPLLFIPFVCV 351
                 **********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 3644.07
//
Query:       EHT98730.1  [L=424]
Description: beta-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-99  332.1   0.0    4.9e-99  331.8   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
  ------ inclusion threshold ------
       0.17   11.3   0.0       0.24   10.8   0.0    1.2  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.8   0.0  5.5e-103   4.9e-99       3     369 ..       3     373 ..       1     379 [. 0.95

  Alignments for each domain:
  == domain 1  score: 331.8 bits;  conditional E-value: 5.5e-103
                    GGS-TT-EEEEE--HHHHH--TTSTT---BHHHH.HHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHH CS
  Glyco_hydro_1   3 etfpedFlwgaataayqiEGawnedGkgesiwDt.ftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGl 97 
                     +fp++F wg+a++a q EG   ++Gk  ++wD+ f+++p +  +g     ++ +Y+++++D+allk+l+ +++r S+sW+R++P+G  ein++ +
     EHT98730.1   3 YRFPDNFWWGSASSALQTEGCSLQGGKSATTWDHwFAHQPHRFHHGIGPADTSGFYQHWRQDIALLKALKHNSFRTSLSWARLMPDGADEINPEAV 98 
                    68*******************************648899999999999777899****************************************** PP

                    HHHHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHHHH CS
  Glyco_hydro_1  98 ayYerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaayeaa 193
                    ++Y+r+idell++gi+p++Tl+H+d+P aLq++Ggwenr++++a  +ya+ +f+ fg+kvk+w+TfnEp v +  gyl+  + P++ d+++a ++a
     EHT98730.1  99 DFYHRVIDELLAQGITPFITLFHFDMPLALQEKGGWENREVVQAVGRYAQRCFTLFGHKVKHWFTFNEPIVPVEGGYLYDFHYPNVVDFKRAATVA 194
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHH.TT--S CS
  Glyco_hydro_1 194 HnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkell.kgkad 288
                     + +l+h+ av+++++ +++g+ig+vlnl+  +p s++++d++aa++a+ + n+ fldpv+kG+Yp+ +  ll+++ +lp+   +d +ll  g +d
     EHT98730.1 195 FHTVLTHSLAVRAWRNGGYDGEIGVVLNLTPSYPRSTNPADVNAAQHADLLFNRSFLDPVLKGEYPSALLGLLKQHDQLPHCLPGDSALLaDGIID 290
                    ******************************************************************************************77899* PP

                    EEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-S..SSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BS CS
  Glyco_hydro_1 289 flglnyYtsrlvknkeseeaslskteekkleeevdpslpktd..igwiiepeglrkllellkkeYqklpiyiteNGlgakdei 369
                    +lg+nyY+ r vk  +s  +       + l +++d    +++   gw+i++ g++++l  l+++Y+++ ++i+eNG+g+++e 
     EHT98730.1 291 LLGVNYYQPRRVKCRDSAVNPDAPFMPEALFDHYDMPGRQMNpyRGWEIYAPGIYDILINLRDNYGNPRCFISENGMGVENEQ 373
                    **************99766666666777777888777777763368********************************99874 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.7e-05      0.24      22      82 ..      60     119 ..      37     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.7e-05
                 SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEE CS
   Cellulase  22 ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildi 82 
                  + + i+++k+ + n +R  +sw +l++++ d ++++++++ ++ v++   ++g+  ++ +
  EHT98730.1  60 HWRQDIALLKALKHNSFRTSLSWARLMPDGAD-EINPEAVDFYHRVIDELLAQGITPFITL 119
                 678999*********************87777.5********************9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3296.72
//
Query:       EHT98731.1  [L=324]
Description: NAD-binding D-isomer-specific 2-hydroxyacid dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-64  215.4   0.0    5.1e-64  214.9   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    2.1e-26   92.2   0.0    2.4e-26   92.0   0.0    1.0  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00029   21.1   0.2     0.0021   18.3   0.0    2.1  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.072   13.7   0.0       0.22   12.1   0.0    1.9  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   1.1e-67   5.1e-64       1     178 []     108     287 ..     108     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 1.1e-67
                   HHHHHHHHTTHHHHHHHHHTTCC..HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew..ksekallgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkeeeeeelgvelvsleellaesDi 94 
                   +al+l+++rr++e+d++v++g+w  +   +  g ++++kt+Gi+G+GrIG a+a+r++ +fgm++++  r++++++ e++  ++ ++le+ll+esD+
    EHT98731.1 108 MALVLSTARRIPELDAWVKAGNWqkSIGPDRFGMDVHHKTMGILGMGRIGMALAQRAHfGFGMNILYNARRQHDQA-ESQFAARRCELETLLKESDF 203
                   689********************65555699999***********************************9988666.888899************** PP

                   EEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  95 vslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   v++ lplt+et+hli+ae+la+mk++a+liN++RG++vde+aL++aL++g+i++a+lDvfe+eplp+dspll+lpnv+  PHi+
    EHT98731.1 204 VCISLPLTEETHHLIGAEQLAMMKPSAVLINAGRGPVVDENALITALQEGTIHAAGLDVFEKEPLPADSPLLSLPNVVTLPHIG 287
                   **********************************************************************************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   5.3e-30   2.4e-26       1     134 []       5     319 ..       5     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 5.3e-30
                 EEEEST.CHHHHHHHHHTTE.EEEEES..CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHH CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegv.evevkd..ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgyste 96 
                 v+++++l+++ +++l + +    e++d  + ++++ ++++++a++++    + v+ e+l+++p L+  + ++vG+Dn+D+da+++rG++++++p++ te
  EHT98731.1   5 VILYKKLPDDLRARLAD-YAtITEINDlsPESQQQHAQALQQAEGMLGSGGK-VNGELLAKMPALRACSSVSVGYDNFDVDALNQRGVVLMHTPTVLTE 101
                 67888999999999999.333566666767778899***********99998.********************************************** PP

                 HHHHHH............................................................................................. CS
                 xxxxxx............................................................................................. RF
  2-Hacid_dh  97 svAElt............................................................................................. 102
                 +vA++                                                                                              
  EHT98731.1 102 TVADTImalvlstarripeldawvkagnwqksigpdrfgmdvhhktmgilgmgrigmalaqrahfgfgmnilynarrqhdqaesqfaarrceletllke 200
                 *************************************************************************************************** PP

                 .......................................................................................T-BHHHHHHHHH CS
                 .......................................................................................xxxxxxxxxxxx RF
  2-Hacid_dh 103 .......................................................................................aaTeeaqeniae 114
                                                                                                        +aT+e++  +++
  EHT98731.1 201 sdfvcislplteethhligaeqlammkpsavlinagrgpvvdenalitalqegtihaagldvfekeplpadspllslpnvvtlphigSATHETRYGMMQ 299
                 *************************************************************************************************** PP

                 HHHHHHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 115 eaaenlvaflkgespanavn 134
                  a+enl+a+++g+  +n+vn
  EHT98731.1 300 DAVENLIAAMSGKVEKNCVN 319
                 *******************8 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.16   7.3e+02      34      66 ..      81     114 ..      58     118 .. 0.84
   2 !   18.3   0.0   4.6e-07    0.0021       2     111 ..     148     257 ..     147     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.16
                    HHHHHHHTTEEE-SSHHHHHHHC.SEEEE-SSSH CS
  NAD_binding_2  34 kveelvaegakaaesieelvasl.dvvitmvkag 66 
                     v++l ++g+++++++  l++++ d+++ +v ++
     EHT98731.1  81 DVDALNQRGVVLMHTPTVLTETVaDTIMALVLST 114
                    67889999999*****999999999999998665 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 4.6e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++G+G +G+ +a++    g+ + +    + + +++ ++ a    ++e l+++ d+v + ++ ++++ ++i    l+ +k++++li+ +   + d
     EHT98731.1 148 MGILGMGRIGMALAQRAHF-GFGMNILYNARRQHDQAESQFAARRCELETLLKESDFVCISLPLTEETHHLIGAeQLAMMKPSAVLINAGRGPVVD 242
                    79*************9854.444444444556777777777778888999**********************9888999***********999999 PP

                    HHHHHHHHHHTT-EE CS
  NAD_binding_2  97 trelakelkekglkf 111
                     + l ++l+e  ++ 
     EHT98731.1 243 ENALITALQEGTIHA 257
                    999999999988876 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.9e-05      0.22       2      71 ..     148     210 ..     147     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.9e-05
                    EEEETTSHHHHHHHHHHH.HTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-H CS
  F420_oxidored   2 igiiGaGnmgealasgll.aagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkp 71 
                    +gi+G+G++g ala+++    g    +i+  ++r+ ++ae+  ++        + e++++e+d+v ++++ 
     EHT98731.1 148 MGILGMGRIGMALAQRAHfGFG---MNILYNARRQHDQAESQFAARR-----CELETLLKESDFVCISLPL 210
                    79************97541334...6777566888887777766643.....3468899999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2476.17
//
Query:       EHT98732.1  [L=416]
Description: valine-pyruvate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-19   69.8   0.0    9.6e-19   67.8   0.0    1.8  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.013   14.3   0.0      0.046   12.5   0.0    1.7  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
      0.036   13.3   0.0       0.06   12.6   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
      0.085   11.5   0.0       0.16   10.6   0.0    1.4  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.1e-22   9.6e-19     127     361 ..     166     403 ..      45     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 2.1e-22
                    TTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT..EEEEEESS CS
  Aminotran_1_2 127 dfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn..llivgsls 220
                    ++h+d+e+l    ++       + +i+v  p NPtG v+t +el +l +la+++++ l++D aY++   g   +  +r++     n  ++++ sls
     EHT98732.1 166 KYHVDFEHLPM--ND------DVGLICVSRPTNPTGNVITDDELLQLDALAQQHEVPLLIDNAYGVPFPG-IIFSDVRPLW----NpnIILCMSLS 248
                    56777777766..44......579**********************************************.3333334444....355******** PP

                    STTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEE CS
  Aminotran_1_2 221 KafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs....eleemrqrlqkrrkelrdeLaelglkvlasqsgmfllt 310
                    K +Gl+G R+G+i++++  + ++ ++   +     s+++a+++++++  +l +        + + ++ +  + +r  L +    + ++++++fl+ 
     EHT98732.1 249 K-LGLPGARCGIIIADESTITAIGNMNGIISLapGSIGPAIASEMIQRGDLLRLseevIKPFYQHKVMQTITLIRRYLSAERCLIHKPEGAIFLWL 343
                    9.9***********************999888*999************99997744332233444555555566666666678888889******* PP

                    EETHH..CHHHHHHHHHHTCTEEEEEGGGGTS.........TTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 311 dlsae..takelskkLleevgvyvtpgtsftv.........pgrlRitvAglteeeleelve 361
                     ++ +  + + l++ L  + gv+++pg  f            ++ R+++   ++e++e++++
     EHT98732.1 344 WFRDLpiSTELLYQRLKAR-GVLMVPGHFFFPglehdwphtHQCMRMNY-VPDAENIERAIQ 403
                    ******999999999****.******98876677999999999******.999999999987 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05     0.046     175     412 ..     181     412 ..     170     415 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
                     EEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-HHH CS
  Aminotran_MocR 175 GilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhdlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvassedn 269
                     G++ v + +nptG++i+ +   +l al     +  ++ d+ay v            i + +r    p+  ++  s sk+ + Ga  +++ + e  
      EHT98732.1 181 GLICVSRPTNPTGNVITDDELLQLDALA-QQHEVPLLIDNAYGVPFP-------GIIFSDVRPLWNPNI-ILCMSLSKLGLPGARCGIIIADEST 266
                     888999999*******999999998885.456889999****99643.......235555666667875.566799******************* PP

                     HHHHHHHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHH.HHHH...HHHHHHTTTSSEEE---SBSS-EEEEESS.S-HHHH.H CS
  Aminotran_MocR 270 iawlkkylGlqsiGpdkveqlrhvkflkdyeGlealmrdhaeliapkfe.avle...vleaelggaevatwteprGGyfisldtld.gvakrv.v 358
                     i+ ++   G+ s+ p  +  +    +++  +    l+r   e+i+p ++ +v++    +++ l +ae    ++p+G  f+ l   d +++ +   
      EHT98732.1 267 ITAIGNMNGIISLAPGSIGPAIASEMIQRGD----LLRLSEEVIKPFYQhKVMQtitLIRRYL-SAERCLIHKPEGAIFLWLWFRDlPISTELlY 356
                     *******************999988888765....5666777787766523444110445555.556677899*******999888566655515 PP

                     HHHHHCTEE---TTTTSSTT--..SSS-EEEE--SSS-HHHHHHHHHHHHHHHHHH CS
  Aminotran_MocR 359 klaeeaGvsltaaGatypaGed..pkdrnirlaptlppleevetamdvvatcvkla 412
                     +  ++ Gv + +    +p  e   p+ +       +p  e++e a++ +a  v++a
      EHT98732.1 357 QRLKARGVLMVPGHFFFPGLEHdwPHTHQCMRMNYVPDAENIERAIQILAEEVEIA 412
                     6778889999999999997543359988777778899*********9999988877 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.06     125     169 ..     177     220 ..     166     255 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                      +++++li++   +n   G+v++ +el ++ a+a+++++pl++D A
       EHT98732.1 177 NDDVGLICVSRPTNP-TGNVITDDELLQLDALAQQHEVPLLIDNA 220
                      478999***998885.8**************************87 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.5e-05      0.16     156     196 ..     181     223 ..     171     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
                 EEEEEECSSTTTTB-..---HHHHHHHHHCCT--EEEEGCCCC CS
     SepSecS 156 ilavlstlsffaprs..pDdvkeiakiCaeydvPhlvNgAYai 196
                  l+ +s ++  ++++   D++ ++ ++ ++++vP+l+ +AY++
  EHT98732.1 181 GLICVSRPTNPTGNVitDDELLQLDALAQQHEVPLLIDNAYGV 223
                 5555566666666642269999********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3175.00
//
Query:       EHT98733.1  [L=303]
Description: cysteine and O-acetyl-L-serine efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-33  115.8  46.2    1.4e-17   64.2  18.5    2.1  2  EamA      EamA-like transporter family
    1.9e-06   27.1  15.9      3e-05   23.1   7.7    2.2  2  CRT-like  CRT-like, chloroquine-resistance transporter-like


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9  19.7   1.3e-19   1.2e-15       4     136 ..       6     131 ..       3     132 .. 0.86
   2 !   64.2  18.5   1.5e-21   1.4e-17       3     135 ..     147     287 ..     145     289 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.3e-19
        EamA   4 illallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgl.lgtvlafllffyalkktsasnaslitsle 101
                 +llal++++ w+++fv++k +l++++p+ l+++rf   +++ ++ +ll +++       ++++lll+g  +++  + +lf+  +  ++a+ asli+  +
  EHT98733.1   6 WLLALCVVIAWGVNFVVIKLGLHNMPPFLLAGLRF---ALVAFPALLLVRRPA-----VPVKWLLLYGMtISFGQFAFLFLAIILGMPAGLASLILQAQ 96 
                 79********************************9...455566666666666.....5667776666536777777899999999************* PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                   ftl+l++l+l ekl + +++g++++  G++l+ 
  EHT98733.1  97 AFFTLLLGALFLAEKLRWNHIAGMLIATSGIFLLA 131
                 ********************************986 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 1.5e-21
        EamA   3 gillallaalfwaiyfvlskillrkv..spltltfvrfliagillliiallkegkl......aklslkdwllllllgllgtvlafllffyalkktsasn 93 
                  ++l+l+aa++w+++ ++ ki+ r +  + ++l++++ l+  + +++ +ll+eg+         ++l+ +  l++l++++t+++++++ ++l++ +  +
  EHT98733.1 147 TMMLMLAAAFSWGLGNITNKIITRHYpvPVMSLVVWSALVPVVPFFACSLLFEGRSaiitslTHIDLQTVMTLIYLAFVATIMGYGIWSTLLSRYETWR 245
                 5789******************9999555569999**********999999999999998888899999****************************** PP

        EamA  94 aslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++++++l+Pv+ ++ ++l+lge+l+  q++g+v+i++G+l+ 
  EHT98733.1 246 VAPLSLLVPVVGIVSAALVLGETLSRQQIVGAVIIIVGLLVN 287
                 ***************************************986 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   7.7   3.4e-09     3e-05      95     224 ..      87     220 ..      55     237 .. 0.85
   2 !    9.0   1.1   6.8e-05      0.61     108     140 ..     257     289 ..     246     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.4e-09
    CRT-like  95 slqvllnqaiipitllasllllkerysliqylGAlviilgvvvvlipsllgessegnklvfnllllisviPvalSnvykeiafkeveldvlyLqawval 193
                  l +l+ qa   +tll+  l+l e+  + ++ G l+ + g++++ ++ ++g+s +g +l   +l+l++     l n++  i  +++ + v+ L +w al
  EHT98733.1  87 GLASLILQAQAFFTLLLGALFLAEKLRWNHIAGMLIATSGIFLLATSGMAGQSAAGITLTTMMLMLAAAFSWGLGNITNKIITRHYPVPVMSLVVWSAL 185
                 48899*******************************************************************************************998 PP

    CRT-like 194 fq...lligilllpvnal.llkpakikfkeilesl 224
                      ++ + ll+   ++ ++  ++i+++ +++ +
  EHT98733.1 186 VPvvpFFACSLLFEGRSAiITSLTHIDLQTVMTLI 220
                 65111567778887666546677777777777655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 6.8e-05
    CRT-like 108 tllasllllkerysliqylGAlviilgvvvvli 140
                  ++ + l+l e  s  q++GA++ii+g++v + 
  EHT98733.1 257 GIVSAALVLGETLSRQQIVGAVIIIVGLLVNMF 289
                 466678999********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2125.95
//
Query:       EHT98734.1  [L=69]
Description: hypothetical protein CKS_4338 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 550.60
//
Query:       EHT98735.1  [L=310]
Description: hypothetical protein CKS_4339 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-84  280.9   0.0    6.9e-84  280.5   0.0    1.1  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
      0.019   14.6   1.6      0.042   13.5   1.6    1.6  1  Yae1_N          Essential protein Yae1, N terminal
      0.094   12.9   0.1       0.24   11.6   0.1    1.7  1  DUF2802         Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.5   0.0   1.1e-87   6.9e-84       1     202 [.      10     210 ..      10     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 280.5 bits;  conditional E-value: 1.1e-87
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDa f+++l++p+ ardf+eihlp++l++++dl+tlkl sgsf+e++lr+++sD+L+s+kt++g egy+yvliEh+sspd++mafrLlrYava
      EHT98735.1  10 TPHDATFRQFLTQPDIARDFMEIHLPADLRAICDLRTLKLASGSFVEADLRQYFSDVLYSLKTTAG-EGYMYVLIEHQSSPDRHMAFRLLRYAVA 103
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+a++k+ lplvip++fY G+++ +p+s+++ld f++p+la +ly+  f+LvD+t++pddei+e+r++a+l+l+qkhi+qrdla+l+++l
      EHT98735.1 104 AMQRHLDAGYKT-LPLVIPVLFYMGKRRpYPYSTCWLDDFTHPALACRLYSTCFPLVDITVMPDDEIMEHRSMAALTLLQKHIHQRDLANLMDRL 197
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeq 202
                     v +l +++ +++q
      EHT98735.1 198 VPVLLSGYLSSSQ 210
                     ****999988877 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.6   7.1e-06     0.042       5      26 ..     256     277 ..     254     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.1e-06
      Yae1_N   5 GiaeGkeqglqeGfdeGyqeGa 26 
                 G ++G e+g q G++eG+ eG 
  EHT98735.1 256 GMQKGFEKGIQTGRHEGRNEGK 277
                 8888888888888888888885 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     4e-05      0.24      28      58 ..     273     303 ..     240     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
     DUF2802  28 pqsklYsqAiklvrqGasveelaeecgLsra 58 
                  ++++ + A  ++++G+++  +++  gLs+a
  EHT98735.1 273 RNEGKREVARTMLQHGLDRTTVMKMTGLSEA 303
                 5556667799******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2453.71
//
Query:       EHT98736.1  [L=138]
Description: heat shock chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-21   76.4   0.0      2e-21   76.0   0.0    1.1  1  HSP20       Hsp20/alpha crystallin family
    0.00061   19.3   0.0    0.00088   18.8   0.0    1.2  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   2.3e-25     2e-21       4     101 ..      42     136 ..      40     137 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 2.3e-25
                 SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--..---TT----SS---EEEEEE--STTB-TTT-E.EEEETTEEEEEEEBSS--..-------- CS
       HSP20   4 eeeeefevkldvpglkkeelkvkvednrvlvkgeheeeeedekglikerssrkFsrkftLPenvdadkvk.aslkdGvLtvtvpkkepekkkkerkiqi 101
                 ++e++++++++v+g++++el+++ +dn+++v+g h+ee+ ++k+l+++ ++r+F+rkf+L   +d+  v+ a l++G+L++++++  pe++ k+r+i+i
  EHT98736.1  42 VDENHYRITIAVAGFAQSELDITAHDNVLIVRGAHPEEQTERKYLYQGIAERNFERKFQL---ADHIVVRdARLENGLLSIDLERLIPEEA-KPRRIEI 136
                 689*********************************************************...99999973677***************87.*****99 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.8e-08   0.00088       1      63 []      44     121 ..      44     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.8e-08
  ArsA_HSP20   1 ddeyvlkldLPfvdkeeidlsrsgdeLtIkig..................nfrRqitLPsvlarkevtsAkfedgvLeIrF 63 
                 +++y++++++ ++ ++e+d++ +++ L+++                    nf R++ L +++  +   +A++e+g L I++
  EHT98736.1  44 ENHYRITIAVAGFAQSELDITAHDNVLIVRGAhpeeqterkylyqgiaerNFERKFQLADHIVVR---DARLENGLLSIDL 121
                 58***********************************************************8766...99********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1085.10
//
Query:       EHT98737.1  [L=120]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-09   38.3   1.4    2.5e-09   37.4   1.4    1.5  1  DUF1375   Protein of unknown function (DUF1375)


Domain annotation for each model (and alignments):
>> DUF1375  Protein of unknown function (DUF1375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   1.4   1.4e-13   2.5e-09       3      53 .]      35      78 ..      33      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.4e-13
     DUF1375  3 vYsGvqtdisaLsgdgagtpapwvslatppltivDlPvslvvDTvlLPyDl 53
                +Y+G++  +  L+         ++s a+ pl++vDlP+s+v DT+lLP D+
  EHT98737.1 35 YYPGTRASADILT-------DSQASWALKPLALVDLPFSAVMDTLLLPWDY 78
                9************.......99**************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1080.76
//
Query:       EHT98738.1  [L=417]
Description: uncharacterized DUF3748 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-57  191.8   0.1      2e-54  182.7   0.1    4.2  5  DUF3748         Protein of unknown function (DUF3748)
    2.2e-13   49.7   1.0    0.00083   19.2   0.0    5.8  5  PD40            WD40-like Beta Propeller Repeat
    1.4e-06   27.3   0.1      0.027   13.2   0.0    4.7  4  DPPIV_N         Dipeptidyl peptidase IV (DPP IV) N-terminal r
  ------ inclusion threshold ------
       0.17   12.2   0.0        3.5    8.0   0.0    2.9  4  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
       0.25   11.1   4.5        7.9    6.3   0.0    3.4  4  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> DUF3748  Protein of unknown function (DUF3748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.31   1.1e+03      71      84 ..      18      31 ..      15      34 .. 0.84
   2 !  182.7   0.1   5.7e-58     2e-54       1     123 []      65     182 ..      65     182 .. 0.99
   3 ?   -1.0   0.0      0.45   1.6e+03      60      87 ..     289     316 ..     282     326 .. 0.79
   4 ?    0.6   0.0      0.14     5e+02      73      91 ..     348     366 ..     344     381 .. 0.81
   5 ?    0.7   0.0      0.14   4.9e+02      72      85 ..     390     403 ..     380     410 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
     DUF3748 71 vhvfsgdgewvsft 84
                + v+ +d++w++f 
  EHT98738.1 18 INVWTPDSQWLAFD 31
                679********995 PP

  == domain 2  score: 182.7 bits;  conditional E-value: 5.7e-58
     DUF3748   1 hvGvvtvsPveperlvfihGpenpdeqWkydfsrrrGviveeaepekastldalditpPytpGaLrGGshvhvfsgdgewvsftynDhvlkeldteeal 99 
                 hvGvvtv P+ per+v ihGpe+pd++W+ydf++rrGv++e+   ++a  lda+ditpP+tpGaLrGGshvhvfs+dg+++sftynDhv++eld   +l
  EHT98738.1  65 HVGVVTVCPTLPERYVCIHGPEHPDDNWHYDFHHRRGVMIEA---GQAASLDACDITPPFTPGALRGGSHVHVFSPDGSRLSFTYNDHVMHELD--ISL 158
                 8***************************************99...999**********************************************..99* PP

     DUF3748 100 dlrnvgvavplkavkvekkhprey 123
                 dlrnvg+avplkavk ek+hprey
  EHT98738.1 159 DLRNVGIAVPLKAVKPEKQHPREY 182
                 ***********************8 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.45
     DUF3748  60 ytpGaLrGGshvhvfsgdgewvsftynD 87 
                 y +G  +   h    s+dg+ ++f + D
  EHT98738.1 289 YSKGLAQQPRHWLRSSPDGSAIAFLMAD 316
                 6666666677888889*******99887 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.14
     DUF3748  73 vfsgdgewvsftynDhvlk 91 
                  + + ge ++f +++ v+ 
  EHT98738.1 348 SWHPRGETIAFICDNSVML 366
                 68999********999985 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.14
     DUF3748  72 hvfsgdgewvsfty 85 
                  v+s+dg+ ++f  
  EHT98738.1 390 VVWSPDGKKIAFMR 403
                 58999999999965 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0045        16      16      25 ..      21      30 ..      20      30 .. 0.94
   2 !    7.5   0.0    0.0011       3.8      15      27 ..     134     146 ..     133     149 .. 0.87
   3 ?    4.0   0.0     0.014        50      17      25 ..     304     312 ..     286     313 .. 0.94
   4 !    6.5   0.0    0.0023       8.3      11      25 ..     344     358 ..     334     361 .. 0.87
   5 !   19.2   0.0   2.3e-07   0.00083      12      32 ..     388     407 ..     374     413 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0045
                E-TTSSEEEE CS
        PD40 16 fSPDGkrlaF 25
                ++PD ++laF
  EHT98738.1 21 WTPDSQWLAF 30
                *********9 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                 EE-TTSSEEEEEE CS
        PD40  15 sfSPDGkrlaFsS 27 
                  fSPDG+rl F+ 
  EHT98738.1 134 VFSPDGSRLSFTY 146
                 69*******9986 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.014
                 -TTSSEEEE CS
        PD40  17 SPDGkrlaF 25 
                 SPDG+ +aF
  EHT98738.1 304 SPDGSAIAF 312
                 9*******9 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0023
                 EEEEEE-TTSSEEEE CS
        PD40  11 egaPsfSPDGkrlaF 25 
                   a+s+ P G ++aF
  EHT98738.1 344 QSAFSWHPRGETIAF 358
                 6799*********** PP

  == domain 5  score: 19.2 bits;  conditional E-value: 2.3e-07
                 EEEEE-TTSSEEEEEEECT.T CS
        PD40  12 gaPsfSPDGkrlaFsSdRgsG 32 
                  a  +SPDGk++aF ++++ G
  EHT98738.1 388 DAVVWSPDGKKIAFMREKE-G 407
                 6678***********9976.4 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.16   5.8e+02      46     117 ..      17      30 ..       3      32 .. 0.61
   2 ?    1.5   0.0     0.029     1e+02     105     121 ..     132     148 ..     127     153 .. 0.77
   3 !    4.0   0.0    0.0048        17     109     128 ..     304     323 ..     298     337 .. 0.81
   4 !   13.2   0.0   7.6e-06     0.027      34     121 ..     335     405 ..     322     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.16
                 SEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEEE CS
     DPPIV_N  46 qlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrlay 117
                 ++                                                            W pd+++la+
  EHT98738.1  17 NINV----------------------------------------------------------WTPDSQWLAF 30 
                 4444..........................................................5555555554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.029
                 EEEE-TTSSEEEEEEEE CS
     DPPIV_N 105 avwWspdgsrlaylrfd 121
                  + +spdgsrl+++  d
  EHT98738.1 132 VHVFSPDGSRLSFTYND 148
                 56788888888887766 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0048
                 -TTSSEEEEEEEECTTS-EE CS
     DPPIV_N 109 spdgsrlaylrfdeseVpei 128
                 spdgs++a+l  d+++V + 
  EHT98738.1 304 SPDGSAIAFLMADSQQVIQL 323
                 9**************99655 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 7.6e-06
                 ECEEEETTTT.BSEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEEEEEEE CS
     DPPIV_N  34 eveelspgeeklqlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrlaylrfd 121
                 ++++l+++   ++ + w P g+ +af+ +n + +   +tg+  +lT         G a          s  av Wspdg+++a++r  
  EHT98738.1 335 QITRLNHS--IQSAFSWHPRGETIAFICDNSVMLCHWQTGECERLTART------GSA---------PSGDAVVWSPDGKKIAFMREK 405
                 44444444..788889999999999999999999999999999999643......444.........4789999*********99855 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.4   1.6e+04      46      61 ..     135     150 ..     134     156 .. 0.69
   2 ?   -2.3   0.0       1.6   5.9e+03      47      61 ..     304     318 ..     299     329 .. 0.67
   3 ?    8.0   0.0   0.00097       3.5      40      72 ..     342     374 ..     313     386 .. 0.78
   4 ?   -0.1   0.0      0.34   1.2e+03      43      58 ..     389     404 ..     378     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.4
  ANAPC4_WD40  46 WkpdgklLavaysdge 61 
                  ++pdg+ L + y+d  
   EHT98738.1 135 FSPDGSRLSFTYNDHV 150
                  6788888888887754 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
  ANAPC4_WD40  47 kpdgklLavaysdge 61 
                  +pdg+ +a+ ++d++
   EHT98738.1 304 SPDGSAIAFLMADSQ 318
                  688888888887775 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00097
  ANAPC4_WD40  40 evr.sLaWkpdgklLavaysdgevrlldaesgkv 72 
                  +++ +++W+p g+ +a+ + d++v l++ ++g++
   EHT98738.1 342 SIQsAFSWHPRGETIAFIC-DNSVMLCHWQTGEC 374
                  4443789**********98.78999***999987 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.34
  ANAPC4_WD40  43 sLaWkpdgklLavays 58 
                  ++ W+pdgk +a+  +
   EHT98738.1 389 AVVWSPDGKKIAFMRE 404
                  578******9998665 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.35   1.3e+03       4      11 ..      17      24 ..      16      24 .. 0.88
   2 ?    6.3   0.0    0.0022       7.9       4      12 ..     131     139 ..     130     140 .. 0.88
   3 ?   -3.8   0.4       3.1   1.1e+04       9      12 ..     304     307 ..     304     307 .. 0.95
   4 ?    4.7   0.0    0.0069        25       5      13 ..     389     397 ..     387     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.35
  Proteasome_A_N  4 slttFSPd 11
                    ++++++Pd
      EHT98738.1 17 NINVWTPD 24
                    79*****9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0022
  Proteasome_A_N   4 slttFSPdG 12 
                     ++ +FSPdG
      EHT98738.1 131 HVHVFSPDG 139
                     799*****9 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.1
  Proteasome_A_N   9 SPdG 12 
                     SPdG
      EHT98738.1 304 SPDG 307
                     9**9 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0069
  Proteasome_A_N   5 lttFSPdGR 13 
                       ++SPdG+
      EHT98738.1 389 AVVWSPDGK 397
                     569*****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3341.65
//
Query:       EHT98739.1  [L=269]
Description: erythrose 4-P, mannose 1-P, and alpha-D-glucose-1-P phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-68  231.1   0.0      2e-68  230.9   0.0    1.0  1  Hydrolase_3     haloacid dehalogenase-like hydrolase
      2e-18   66.9   0.1      6e-10   39.1   0.0    2.1  2  S6PP            Sucrose-6F-phosphate phosphohydrolase
      8e-10   39.4   1.1    0.00033   21.0   0.2    3.5  2  Hydrolase       haloacid dehalogenase-like hydrolase
      2e-05   25.1   0.7       0.25   11.7   0.0    3.5  4  HAD             haloacid dehalogenase-like hydrolase
    0.00013   22.1   0.0      0.045   13.8   0.0    2.6  2  HAD_2           Haloacid dehalogenase-like hydrolase
    0.00019   21.5   0.0     0.0022   18.1   0.0    2.6  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.035   14.2   0.1       0.45   10.6   0.0    2.3  2  Hydrolase_like  HAD-hyrolase-like
      0.038   14.3   0.5         38    4.7   0.0    3.5  3  E3_binding      e3 binding domain


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.9   0.0   8.9e-72     2e-68       1     255 []       6     264 ..       6     264 .. 0.99

  Alignments for each domain:
  == domain 1  score: 230.9 bits;  conditional E-value: 8.9e-72
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC...SEEEEGGGTEE.ECTTTEEEEE--B-HHHHHHHHHHHHHT CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgld...lpvialNGali.ddekgkilykstiskedvkeiikllken 94 
                  ia+D+DGTLln +++i+   k+a+++++ekg+ +v+ATGR++++++++l el+l    +++i++NGal+ + e+g+++++ t+  +d++++ kl++e 
   EHT98739.1   6 IAIDMDGTLLNPQHEITAGVKSALNRAREKGVSIVLATGRPYVGIERYLMELDLHtpgQYCISNNGALVhRAEDGEVVADVTLGFDDYMYVEKLAREL 103
                  89***************************************************9999***************************************** PP

                  TCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHH CS
  Hydrolase_3  95 nveillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtal 192
                  +v+++ ++++++y+ nk+ se +++e+  t   +++   ee ++ + + k+++++++  ld ++++l+++ ++++ti +s ++ylei+ + v+Kg ++
   EHT98739.1 104 GVHFQAFDKSHLYTPNKDISEFTIHEASLTGIPVRYRAVEEMDPATRFPKLMMIDKPALLDAAIARLPEHAHQTYTILKSAPYYLEILDRRVNKGYGV 201
                  *****************9999999999999999999999*********************************************************** PP

                  HHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 193 kklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  k la++l+++ eev+a+GD+eND++M+e+ag+gvAmgna ++vkk+A++vtk+n edGVa+a+
   EHT98739.1 202 KMLAEKLGLQAEEVMAIGDQENDLAMIEYAGTGVAMGNAIDSVKKIAQFVTKTNMEDGVAHAI 264
                  *************************************************************98 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.7e-09     6e-06       3      76 ..       4      78 ..       2      89 .. 0.92
   2 !   39.1   0.0   2.7e-13     6e-10     139     230 ..     170     263 ..     156     269 .] 0.77

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.7e-09
                EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----.SEEEETTTTEEEE.. CS
        S6PP  3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkP.dvlitsvGteiyyge 76
                +l+++d+D+tl+++++e +a  ++ l+ +++k v +v+aTGR +   ++ l e  l +P +++i++ G+ ++ +e
  EHT98739.1  4 KLIAIDMDGTLLNPQHEITAGVKSALNRAREKGVSIVLATGRPYVGIERYLMELDLHTPgQYCISNNGALVHRAE 78
                689********************************************************7799999999999866 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 2.7e-13
                 HHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HH..HHHHHHHH--TTE..EE- CS
        S6PP 139 lLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqee..llqwllenakeneriyla 230
                 l e+++++  ++ s+  +l +l +r +kg+ ++ La+kl+l++e+++  Gd++nD ++++    gV +gna     +++    +++ ++ + +a
  EHT98739.1 170 LPEHAHQTYTILKSAPYYLEILDRRVNKGYGVKMLAEKLGLQAEEVMAIGDQENDLAMIEYAGTGVAMGNAIDSvkKIAQFVTKTNMEDGVAHA 263
                 33455666777788999*****************************************************876622444444444444444444 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.5e-06     0.017       1      29 [.       3      36 ..       3     184 .. 0.89
   2 !   21.0   0.2   1.5e-07   0.00033     175     210 .]     197     232 ..     154     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.5e-06
                SSEEEEESBTTTBCHHHHHHHHHHHH.....CHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx RF
   Hydrolase  1 iktvvfDkdGTLttgepsvedvivsa.....ala 29
                ik++++D+dGTL++ +++++  ++sa     ++ 
  EHT98739.1  3 IKLIAIDMDGTLLNPQHEITAGVKSAlnrarEKG 36
                89**************999999999954433333 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.5e-07
                 SHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 175 spegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +  g++ ++++L+ + eev+++GD  nD+a+++ Ag
  EHT98739.1 197 KGYGVKMLAEKLGLQAEEVMAIGDQENDLAMIEYAG 232
                 67788999*************************998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.22     5e+02       3      12 ..       8      17 ..       6      23 .. 0.83
   2 !    8.5   0.0    0.0011       2.4      89     130 ..      24      69 ..      18     117 .. 0.79
   3 ?   -1.2   0.0       1.1   2.4e+03      27      72 ..     135     177 ..     117     201 .. 0.63
   4 !   11.7   0.0   0.00011      0.25     161     187 ..     202     228 ..     186     229 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
         HAD  3 fDfDgTLldg 12
                 D+DgTLl+ 
  EHT98739.1  8 IDMDGTLLNP 17
                6******985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0011
         HAD  89 galellaahraaGdrvvvvSgglrplvepllaelg....adevlat 130
                 g++ +l+++r++G+ +v+ +g +   +e+ l el+     ++++++
  EHT98739.1  24 GVKSALNRAREKGVSIVLATGRPYVGIERYLMELDlhtpGQYCISN 69 
                 88999************************99888855555555555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.1
         HAD  27 aprlwralreklllalfrellrldraglaelleallaglseelaae 72 
                  p ++ra++e   + +   + +l+  ++ +ll+a+ a+l+e+ ++ 
  EHT98739.1 135 IPVRYRAVEEMDPATR---FPKLMMIDKPALLDAAIARLPEHAHQT 177
                 5555666666655555...333344467777777777777666554 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00011
         HAD 161 wlaaegegidleevvayGDspsDlpll 187
                 ++ ae+ g++ eev+a+GD ++Dl++ 
  EHT98739.1 202 KMLAEKLGLQAEEVMAIGDQENDLAMI 228
                 4478899******************96 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0078        18       4      27 ..       9      32 ..       6      55 .. 0.82
   2 !   13.8   0.0     2e-05     0.045     141     175 ..     201     235 ..     171     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0078
       HAD_2  4 DlDgTlldteeliiqafnelleey 27
                D+DgTll+ +  i + ++++l++ 
  EHT98739.1  9 DMDGTLLNPQHEITAGVKSALNRA 32
                9*******9999999999888765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2e-05
       HAD_2 141 iekaleklklkkeeviyvGDsptDieaakkagikv 175
                 ++ + ekl+l++eev+ +GD+ +D+     ag+ v
  EHT98739.1 201 VKMLAEKLGLQAEEVMAIGDQENDLAMIEYAGTGV 235
                 566789******************99888888765 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.8e-07    0.0022       1      39 [.       6      45 ..       6      79 .. 0.84
   2 ?   -0.4   0.0      0.56   1.3e+03      47      66 ..      95     118 ..      92     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.8e-07
                 EEEESTTTSEE.TTEE-TTHHHHHHHHHHTT-EEEEEE-- CS
  Hydrolase_6  1 flfDidGvLwr.gdkaipgaaealnalraagkpvvllTNn 39
                 +++D+dG+L++ ++++  g++ aln+ r++g+ +vl T +
   EHT98739.1  6 IAIDMDGTLLNpQHEITAGVKSALNRAREKGVSIVLATGR 45
                 579*******96777899*****************99965 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.56
                  HHHHH.HHTT--...--GGGEEEH CS
  Hydrolase_6  47 yakkl.eklgvd...iteeqvvts 66 
                  y++kl ++lgv+   +++++++t+
   EHT98739.1  95 YVEKLaRELGVHfqaFDKSHLYTP 118
                  78999899***9333344555555 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.26   5.7e+02       7      27 ..     160     180 ..     156     180 .. 0.85
   2 ?   10.6   0.0    0.0002      0.45      12      37 ..     203     227 ..     199     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.26
                     SHHHHHHHHHH---GGGEEEE CS
  Hydrolase_like   7 pemydfalevlgsdpeevlmi 27 
                     p ++d+a ++l ++ ++++ i
      EHT98739.1 160 PALLDAAIARLPEHAHQTYTI 180
                     4599***********999976 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
                     HHHHHH---GGGEEEEES-TTTHHHH CS
  Hydrolase_like  12 falevlgsdpeevlmiGDrlatDiag 37 
                     + +e+lg++ eev++iGD+ + D+a+
      EHT98739.1 203 MLAEKLGLQAEEVMAIGDQ-ENDLAM 227
                     6799***************.***986 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.027        60       6      25 ..      27      44 ..      27      45 .. 0.76
   2 ?    4.7   0.0     0.017        38       7      16 ..      96     105 ..      95     110 .. 0.90
   3 ?    1.4   0.0      0.19   4.2e+02       7      20 ..     201     214 ..     200     235 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.027
                HHHHHHHHCT--TTTS-.--C CS
  E3_binding  6 aaRklAkelGidLsdvk.GtG 25
                +a + A+e+G+   +++ +tG
  EHT98739.1 27 SALNRAREKGV---SIVlATG 44
                57789******...6655777 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.017
                 HHHHHHHCT- CS
  E3_binding   7 aRklAkelGi 16 
                 + klA+elG+
  EHT98739.1  96 VEKLARELGV 105
                 89*******9 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.19
                 HHHHHHHCT--TTT CS
  E3_binding   7 aRklAkelGidLsd 20 
                 +++lA+ lG+  ++
  EHT98739.1 201 VKMLAEKLGLQAEE 214
                 899*****994433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1993.65
//
Query:       EHT98740.1  [L=802]
Description: DNA gyrase, subunit B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-59  200.1   0.0    3.2e-59  199.3   0.0    1.4  1  DNA_gyraseB    DNA gyrase B
      4e-48  163.5   0.0    7.5e-48  162.6   0.0    1.5  1  GyrB_insert    DNA gyrase B subunit insert domain
    9.7e-31  105.8   0.1    2.3e-30  104.6   0.1    1.7  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    1.6e-22   80.1   0.2    4.8e-22   78.6   0.2    1.9  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    2.2e-18   66.4   0.0    1.1e-17   64.1   0.0    2.2  2  Toprim         Toprim domain
    0.00047   20.0   0.1     0.0011   18.8   0.1    1.7  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   0.0   1.1e-62   3.2e-59       1     173 [.     221     390 ..     221     391 .. 0.99

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 1.1e-62
  DNA_gyraseB   1 GlkdfveelnkdkkelikevlsvegekaveevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisgedi 98 
                  G+k fve+lnk+k++++ +v+++++ek  +  i vevalqw+++++eni++F+Nni++++GGtH++gf++a+t+tln y++k+++ kk++ + +g+d 
   EHT98740.1 221 GIKAFVEYLNKNKTPIHPTVFYFSTEK--DG-IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA 315
                  9**************************..88.****************************************************************** PP

  DNA_gyraseB  99 regltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaarkare 173
                  regl+avvsvk+p+p+F +QTK+kL +sevks+ve+ ++e l+++l en+ +ak ++ k+++aa+areaar+are
   EHT98740.1 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARRARE 390
                  *************************************************************************98 PP

>> GyrB_insert  DNA gyrase B subunit insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   2.5e-51   7.5e-48       2     166 ..     565     727 ..     564     728 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 2.5e-51
  GyrB_insert   2 eLvvnedappisgeaLeeLvrqyrkaeaiIkRlsrrydeevLeallelpeldeedledeaaaeawakalearlnqeeekgeryeveveedeeeekall 99 
                  +L++n+ ap++ ge Le+Lv ++++++++IkR++rr++ ++L+al+++ +l+  dl++eaa++aw++ l + l ++e++g++y  +v+e+ e +++ +
   EHT98740.1 565 TLHTNASAPALGGEPLESLVADFNSTQKMIKRMERRFPLAMLRALVYHDTLS--DLSNEAAVNAWINGLVSYLTEREAHGSTYVAHVRENRELNQFEP 660
                  59**************************************************..******************************************** PP

  GyrB_insert 100 evertqhGnekesvldadffesadYralaelaeklkgLieegAyikRGekeqavesFkealeWLleE 166
                   +++++hG+++++ ld++f+ +++Yr++ +l+ kl+gL+ee+Ayi+RGe++q+v+sF++a+eWL++E
   EHT98740.1 661 VLRVRTHGVDTDYPLDSEFIMGPEYRKICALGGKLRGLLEEDAYIERGERRQPVSSFEQAIEWLVKE 727
                  *****************************************************************99 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.1   7.6e-34   2.3e-30       2      63 .]     730     791 ..     729     791 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 7.6e-34
  DNA_gyraseB_C   2 kkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtiedaeeadelfstLmGkkvepRrefie 63 
                    +++++qR+KGLGEmnp+qLweTTmdp++Rr+l+vti+da +ad+lf+tLmG+ vepRr+fie
     EHT98740.1 730 RGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIAADQLFTTLMGDAVEPRRAFIE 791
                    5689*********************************************************8 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.2   1.6e-25   4.8e-22       2     110 ..      32     173 ..      31     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.6e-25
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHH CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkkl 84 
                 d ++L++++ ++vdNa+++  a+++++i v+i+    d+++sv+D+G+Gip  +++              + ++kf++ +s+k++gg +G+G+s+v++l
  EHT98740.1  32 DGTGLHHMVFEVVDNAIDEalAGHCKDIVVTIH--A-DNSVSVQDDGRGIPTGIHEeegvsaaevimtvlHAGGKFDD-NSYKVSGGLHGVGVSVVNAL 126
                 7899***************7666999*******..5.9******************************877777****.******************** PP

                 HHHTTTEEEE.....................EEETTTEEEEEEEEES CS
   HATPase_c  85 velmgGeiwv.....................esepgrGttftftlpl 110
                 +++++ +i++                      +++  Gt+++f++  
  EHT98740.1 127 SQKLELTIRRegkvhqqiylhgvpeaplavtGDTDATGTRIRFWPSH 173
                 **999999995555555555665555555443333559999999865 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   3.6e-21   1.1e-17       1     102 [.     419     531 ..     419     532 .. 0.94
   2 ?   -2.3   0.0       1.7   5.1e+03      19      54 ..     682     715 ..     676     730 .. 0.71

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 3.6e-21
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH......HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT.. CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka......lkelakradeiilatDpDreGeaiawellevlk.. 88 
                 e+++vEg+s+ +++++ +++++qa+++++G+il++e+ +f++++   e+ + +++l++       ++ ++r++ ii++tD+D++G++i+++ll++++  
  EHT98740.1 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKaRFDKMLAsqEVATLITALGCgigrdeYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYrq 517
                 689**********************************888888889999999999999***999*********************************88 PP

                 ..HHHTTTEEEEEESS CS
      Toprim  89 ..ellenkigrvefse 102
                   e++e+  g+v++++
  EHT98740.1 518 mpEIIER--GHVYIAQ 531
                 8888888..9999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                 TSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHH CS
      Toprim  19 gsgfqavtaslGhildletefkpvyeeiedkkkvlk 54 
                 g+++ ++ a+ G+++ l +  +++y+e+ + ++ ++
  EHT98740.1 682 GPEYRKICALGGKLRGLLE--EDAYIERGERRQPVS 715
                 5678889999*****9999..777775544444444 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   3.8e-07    0.0011       5      48 ..      38      81 ..      33     146 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.8e-07
  HATPase_c_3  5 kAlaelvdNsld....AdaenvkievnknrgktgeivieDdGkGmsee 48
                   ++e+vdN++d    ++++ + ++++ +    ++++++DdG G++  
   EHT98740.1 38 HMVFEVVDNAIDealaGHCKDIVVTIHAD----NSVSVQDDGRGIPTG 81
                 5699********94444444455555554....59********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5432.89
//
Query:       EHT98741.1  [L=361]
Description: gap repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-40  137.6   0.0      5e-40  137.3   0.0    1.1  1  SMC_N     RecF/RecN/SMC N terminal domain
    1.8e-09   37.8   0.0    2.3e-09   37.5   0.0    1.2  1  AAA_15    AAA ATPase domain
    2.5e-09   37.4   0.1    2.2e-06   27.7   0.0    2.3  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    9.1e-08   32.8   0.1    1.7e-07   31.9   0.1    1.8  1  AAA_23    AAA domain
    2.7e-06   27.1   0.1    5.2e-06   26.2   0.1    1.5  1  AAA_27    AAA domain
    0.00057   19.6   0.1     0.0032   17.2   0.0    2.2  2  AAA_29    P-loop containing region of AAA domain
     0.0069   16.9   0.0       0.02   15.4   0.0    1.8  2  ABC_tran  ABC transporter
  ------ inclusion threshold ------
      0.013   15.9   2.7        0.3   11.5   0.0    2.5  2  AAA_16    AAA ATPase domain
      0.095   11.3   0.0       0.17   10.5   0.0    1.3  1  AAA_13    AAA domain
       0.14   11.4   0.5       0.22   10.7   0.0    1.5  2  DUF2813   Protein of unknown function (DUF2813)


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.0   2.8e-43     5e-40       2     217 ..       3     353 ..       2     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 2.8e-43
                 EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsis 100
                 l+rl i++F+++  ++++l ++++f+++vG+NGSGK+++l+Ai ++LG  + +++rs ++ ++i + ++ a+v ++++e     ++        e+s+ 
  EHT98741.1   3 LTRLLIKDFRNI--EQADLALAPGFNFLVGANGSGKTSVLEAI-YTLG--HGRAFRSLQAGRVIRH-DQAAFVLHGRLEG----QE-------REFSVG 84 
                 789*********..7****************************.****..8999***********9.9999999999988....23.......46**** PP

                 EEEETTSEEEEEETTEEE-H.HHHHHHHHCTT-STT............................................................... CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx............................................................... RF
       SMC_N 101 rrvkrkgeseykingkevtk.kevsellesagiske............................................................... 135
                  ++ r ges+++i+g++ +k +e+++ll+++ i++e                                                               
  EHT98741.1  85 LSKNRAGESKVRIDGSDGHKvAELAQLLPMQLITPEgftllnggpkyrrayvdwgcfhntpgffnawsnlrrllkqrnaalrqvtrysqvrpwdqelvp 183
                 *******************99****************************************************************************** PP

                 ....................................................................................CS-HHHHHHHHHHHH CS
                 ....................................................................................xxxxxxxxxxxxxxx RF
       SMC_N 136 ....................................................................................lLSgGektLvalaLl 150
                                                                                                     lLS+G+ +L+++aL+
  EHT98741.1 184 laeqisqwraeysdaisaeivttcgqflpefdlrfsfqrgwdkesdyaellernferdraltytasgphkadfriraegtpvedLLSRGQLKLLMCALR 282
                 *************************************************************************************************** PP

                 HH.....HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEEEEEEETT CS
                 xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N 151 fA.....iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvgvtkveng 217
                 +A     +++  ++++yl+D+++++LD+++++ +ae+lk+++  aQ++v ++++e++ ++ d+  +++ ve+g
  EHT98741.1 283 LAqgeflTNQSGRRCVYLIDDFASELDDSRRRLLAERLKATQ--AQVFVSAISSEHVIDMtDEKGKMFRVEQG 353
                 ******9999*****************************999..*********99998886666677776665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.3e-12   2.3e-09       1      47 [.       1      47 [.       1     127 [. 0.83

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.3e-12
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFl 47
                M ++++ ik FR ++++++ l + +++l+G+N+sGK+s+lea++ + 
  EHT98741.1  1 MALTRLLIKDFRNIEQADLALAPGFNFLVGANGSGKTSVLEAIYTLG 47
                9999***************************************9875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.3e-09   2.2e-06       1      73 [.      25      82 ..      25     105 .. 0.66
   2 !    7.9   0.0    0.0014       2.4     165     295 ..     217     330 ..     145     330 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.3e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryr 73
                +n+l+G+NgsGK+++L+a++ l             +     +r+       +++  +f+++ + ++ q+ +++
  EHT98741.1 25 FNFLVGANGSGKTSVLEAIYTLGH----------GR----AFRSLQAGRVIRHDQAAFVLHGR-LEGQEREFS 82
                8******************98832..........22....44444444444445555555555.555555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
      AAA_21 165 rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparel.SdGtkrll....alltallralkkg 258
                 r+++++ ++++  +a+++++ +++ r l    + +++           d+r+r              +p+ +l S G+++ll    +l+   +      
  EHT98741.1 217 RFSFQRGWDKESDYAELLERNFERDRALTYTASGPHKA----------DFRIRA-----------EGTPVEDLlSRGQLKLLmcalRLAQGEF-----L 289
                 33333333333333333333333333333333333333..........333322...........4567777779999999555332222222.....2 PP

      AAA_21 259 .......sllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                         ++liD++ + L+ ++ r l+e lk++++   Qv+++
  EHT98741.1 290 tnqsgrrCVYLIDDFASELDDSRRRLLAERLKATQA---QVFVS 330
                 44466999***********************99977...*9986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   9.5e-11   1.7e-07       1      41 [.       5      45 ..       5     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 9.5e-11
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAikl 41
                +L i+ fr ++  ++ + +g++ ++G NG+GKT++l+Ai  
  EHT98741.1  5 RLLIKDFRNIEQADLALAPGFNFLVGANGSGKTSVLEAIYT 45
                688***********************************943 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   2.9e-09   5.2e-06       1      85 [.       1      84 [.       1     122 [. 0.77

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.9e-09
      AAA_27  1 MrlerLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdn...flhdakkLrigavleeadgeelefa 85
                M l+rL ++ + ++++  l++    +++ +++G+N +GK+++l+Ai  l +G   r+ ++    +hd+    + ++le ++  e+++ 
  EHT98741.1  1 MALTRLLIKDFRNIEQADLALA---PGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAgrvIRHDQAAFVLHGRLEGQER-EFSVG 84
                8899*****************8...9**************************9887765433389************65544.44433 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06    0.0032      15      45 ..      15      46 ..       3      53 .. 0.77
   2 ?   -1.0   0.0      0.84   1.5e+03       6      14 ..     135     143 ..     132     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
      AAA_29 15 htieidlkg.atlltGpsGsGKSTllDAiqal 45
                +++++ l+  + +l+G++GsGK+++l Ai +l
  EHT98741.1 15 EQADLALAPgFNFLVGANGSGKTSVLEAIYTL 46
                4555555444899****************987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.84
      AAA_29   6 lvNWgtfdg 14 
                  v+Wg f++
  EHT98741.1 135 YVDWGCFHN 143
                 689****98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05      0.02      15      37 ..      27      49 ..      15      97 .. 0.83
   2 ?   -2.6   0.0       4.2   7.5e+03     107     121 ..     267     281 ..     215     287 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                EEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 15 aivGenGaGKStLlkllagllkp 37
                 +vG nG+GK+++l++++ l + 
  EHT98741.1 27 FLVGANGSGKTSVLEAIYTLGHG 49
                59***************998665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.2
                 GGS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx RF
    ABC_tran 107 ssLSgGqkqrvalar 121
                   LS Gq + ++ a 
  EHT98741.1 267 DLLSRGQLKLLMCAL 281
                 668888888877665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017       0.3      27      46 ..      26      45 ..      10     116 .. 0.79
   2 ?    3.6   1.2     0.044        79     116     164 ..     273     325 ..     132     332 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
      AAA_16 27 vllsGesGvGKsslvrellr 46
                 +l+G+ G+GK+s+++++++
  EHT98741.1 26 NFLVGANGSGKTSVLEAIYT 45
                589**************996 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.044
      AAA_16 116 a.....srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlles 164
                        +l+ +  ++l  + + +r  v ++Dd+   +d++ + lla+ l+++++
  EHT98741.1 273 QlkllmCALRLAQGEFL--TNQSGRRCVYLIDDFAsELDDSRRRLLAERLKATQA 325
                 24444444444444555..33335569******9989999999999998888776 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.3e-05      0.17      16      49 ..      23      56 ..       8      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
      AAA_13 16 kriNliYGwNGaGKTtLSrllrslelgetepkfa 49
                  +N++ G+NG+GKT++ +++  l +g++   ++
  EHT98741.1 23 PGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQ 56
                569**************99999987777655554 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.22       1      43 [.       1      44 [.       1      50 [. 0.91
   2 ?   -4.2   0.1       4.2   7.5e+03     306     317 ..     107     118 ..     105     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
     DUF2813  1 myLerieisGFRGinrLSlsleen.tvLiGENaWGKSSLldALs 43
                m L r+ i+ FR i++  l l +  + L+G N  GK S l+A+ 
  EHT98741.1  1 MALTRLLIKDFRNIEQADLALAPGfNFLVGANGSGKTSVLEAIY 44
                899******************9853889**************86 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4.2
     DUF2813 306 ellellPlQkil 317
                 el +llP+Q i+
  EHT98741.1 107 ELAQLLPMQLIT 118
                 6899*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2500.26
//
Query:       EHT98742.1  [L=366]
Description: DNA polymerase III, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-46  155.1   0.0    2.3e-39  134.2   0.0    3.2  3  DNA_pol3_beta_2  DNA polymerase III beta subunit, central dom
      8e-44  148.4   0.8    1.4e-43  147.6   0.2    1.7  2  DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal 
    8.3e-44  148.6   0.0    1.7e-39  134.6   0.0    3.1  3  DNA_pol3_beta    DNA polymerase III beta subunit, N-terminal 


Domain annotation for each model (and alignments):
>> DNA_pol3_beta_2  DNA polymerase III beta subunit, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.7e-06     0.022       3     116 .]       6     118 ..       4     118 .. 0.84
   2 !  134.2   0.0   3.8e-43   2.3e-39       1     116 []     129     243 ..     129     243 .. 0.99
   3 ?    2.3   0.0     0.031   1.8e+02      27      45 ..     278     296 ..     262     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-06
                      EHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESSEE CS
  DNA_pol3_beta_2   3 kqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalsegki 96 
                      + ++l + ++qv+   +   t+p+L  + +++++ +lll+ Td     v+++ l++++e   + +vPa+ ++++ + l + + +++++l+ +++
       EHT98742.1   6 EREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNDGSLLLTGTDLEMEMVARVALTQAHE-PGATTVPARKFLDICRGLPE-GAEINVTLEGERM 97 
                      6678888999999999999************************7766666666666666.4799****************.99*********** PP

                      EEEETTEEEEEE-B.SS---B CS
  DNA_pol3_beta_2  97 rfevgnvrltsrll.dgkfPd 116
                       ++ g  r+  ++l   +fP+
       EHT98742.1  98 LVRSGRSRFSLSTLpASDFPN 118
                      999999998765551456775 PP

  == domain 2  score: 134.2 bits;  conditional E-value: 3.8e-43
                      EEEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESS CS
  DNA_pol3_beta_2   1 elkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalseg 94 
                      +l+q +lk+lie+++f+++++++r++L+G+ +e+e+++l+++aTdghRlav+++++ ++ + ++svivP+k++ el +ll+  +  +++++++ 
       EHT98742.1 129 TLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPVGQALP-SHSVIVPRKGVIELLRLLDGGDTPLQVQIGSS 221
                      589**********************************************************.6******************************* PP

                      EEEEEETTEEEEEE-BSS---B CS
  DNA_pol3_beta_2  95 kirfevgnvrltsrlldgkfPd 116
                      +ir++vg++++ts+l+dg+fPd
       EHT98742.1 222 NIRAHVGDYIFTSKLVDGRFPD 243
                      *********************8 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.031
                      GGEEEEEEECCEEEEEEE- CS
  DNA_pol3_beta_2  27 LtGvrleieedklllaaTd 45 
                        Gvrl+i+e++l ++a +
       EHT98742.1 278 FRGVRLHITENQLKITANN 296
                      5799999999999998865 PP

>> DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.83     5e+03      39      57 ..      35      53 ..      32      62 .. 0.78
   2 !  147.6   0.2   2.3e-47   1.4e-43       1     121 []     245     365 ..     245     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.83
                     EEEETTEEEEEEEETTSEE CS
  DNA_pol3_beta_3 39 Lsleegqlklsaensevge 57
                     +++++g+l l++++ e + 
       EHT98742.1 35 MQVNDGSLLLTGTDLEMEM 53
                     7888888888888888764 PP

  == domain 2  score: 147.6 bits;  conditional E-value: 2.3e-47
                      CCCS-SS-SEEEEEEHHHHHHHHHHHHTTSSTSTGEEEEEEETTEEEEEEEETTSEEEEEEEEEBEESS-EEEEEEHHHHHHHHHHH-SSEEEE CS
  DNA_pol3_beta_3   1 krllPkefkkkvtvdlkelkealkRvalladeknrkvrLsleegqlklsaensevgeaeEevdvnyeGeeleiafNvsYlldalkaleteevel 94 
                      +r+lPk+ +k++++ ++ lk+a++R+a+l++ek+r+vrL+++e+qlk++a+n+e++eaeE +dv y+G+elei+fNvsY+ld+l+al++e+v+l
       EHT98742.1 245 RRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITANNPEQEEAEEMLDVSYNGSELEIGFNVSYVLDVLNALKCENVRL 338
                      69******************************************************************************************** PP

                      EESSTTS-EEEEETTEESEEEEE--BB CS
  DNA_pol3_beta_3  95 qltdstkpvllsevedesvkyvilpmr 121
                       ltds+++v++++v +  ++yv++pmr
       EHT98742.1 339 LLTDSVSSVQIEDVVSPAAAYVVMPMR 365
                      **************************7 PP

>> DNA_pol3_beta  DNA polymerase III beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   2.9e-43   1.7e-39       1     121 []       1     120 [.       1     120 [. 0.99
   2 !    5.6   0.0    0.0029        17       2      85 ..     127     210 ..     126     230 .. 0.87
   3 !    4.7   0.2    0.0053        32      31      99 ..     279     347 ..     272     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 2.9e-43
                    -EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTSEEEEEEETTE CS
  DNA_pol3_beta   1 mkftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpndkkvkisvneqk 96 
                    mkf++ere+llk+l++v++ +  R+tlpiL ++l++v+d  l ltgtDle+++ +++++++++e+g+++vpar++ldi++ Lp+++++++++++++
     EHT98742.1   1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNDGSLLLTGTDLEMEMVARVALTQAHEPGATTVPARKFLDICRGLPEGAEINVTLEGER 96 
                    9*********************************************************************************************** PP

                    EEEEEETTEEEEEE-BEGGGS---- CS
  DNA_pol3_beta  97 lliiksgssrfslstlsaeeypnlp 121
                    +l+  sg+srfslstl+a ++pnl+
     EHT98742.1  97 MLVR-SGRSRFSLSTLPASDFPNLD 120
                    ****.******************96 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0029
                    EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTT CS
  DNA_pol3_beta   2 kftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpnd 85 
                    +ft+ ++ l   +e ++ ++ ++ +   L+g++ e + ++l   +tD    +  +++  ++  + +v+vp + ++++++ L+ +
     EHT98742.1 127 EFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPVGQALPSHSVIVPRKGVIELLRLLDGG 210
                    6888888888889999999999999999*********************9999999999998999**************99973 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0053
                    GEEEEEEETTEEEEEEE-SSEE.EEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTSEEEEEEETTEEEE CS
  DNA_pol3_beta  31 sgvllevkdsqlsltgtDleis.iestisaeseeeegkvlvparllldivkaLpndkkvkisvneqklli 99 
                     gv l+++++ql +t+ + e + +e  +  + + +e ++  + +++ld++ aL   ++v + + ++  ++
     EHT98742.1 279 RGVRLHITENQLKITANNPEQEeAEEMLDVSYNGSELEIGFNVSYVLDVLNALKC-ENVRLLLTDSVSSV 347
                    6899************9987652667777777788999***************99.99999888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2639.36
//
Query:       EHT98743.1  [L=468]
Description: chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-98  329.5   0.2    1.6e-98  328.9   0.2    1.3  1  Bac_DnaA     Bacterial dnaA  protein
      2e-32  111.0   0.4    5.4e-32  109.6   0.1    1.9  2  Bac_DnaA_C   Bacterial dnaA protein helix-turn-helix
    4.9e-21   74.2   0.4    1.2e-20   73.0   0.4    1.7  1  DnaA_N       DnaA N-terminal domain
    8.4e-11   41.9   0.0    1.6e-10   41.0   0.0    1.4  1  IstB_IS21    IstB-like ATP binding protein
    2.9e-06   27.7   0.0    1.7e-05   25.3   0.0    2.1  2  AAA          ATPase family associated with various cellular a
    0.00042   19.4   0.0     0.0012   17.9   0.0    1.6  1  Kinesin      Kinesin motor domain
    0.00097   19.2   0.1      0.015   15.3   0.0    2.3  2  AAA_14       AAA domain
      0.001   19.5   0.3     0.0064   16.9   0.1    2.5  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.015   15.5   3.5        2.7    8.2   1.5    3.3  2  AAA_22       AAA domain
      0.026   13.4   0.1      0.067   12.1   0.1    1.7  1  AFG1_ATPase  AFG1-like ATPase
      0.033   14.1   0.0      0.072   13.0   0.0    1.6  1  NACHT        NACHT domain
      0.045   13.7   0.1       0.14   12.0   0.1    1.9  1  ATPase_2     ATPase domain predominantly from Archaea
      0.096   13.1   0.6         13    6.3   0.0    2.7  3  DUF3037      Protein of unknown function (DUF3037)
        0.1   12.7   0.0       0.23   11.6   0.0    1.6  1  BLOC1S3      Biogenesis of lysosome-related organelles comple
       0.12   12.7   0.1       0.44   10.9   0.1    2.1  1  AAA_19       AAA domain


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.9   0.2  1.4e-101   1.6e-98       2     218 ..     134     350 ..     133     351 .. 0.99

  Alignments for each domain:
  == domain 1  score: 328.9 bits;  conditional E-value: 1.4e-101
                 -SS-SGGG----TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-SE CS
    Bac_DnaA   2 nkrytFetFviGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvDv 100
                 n+r+ F++Fv+G+sn+lA+aaa++va++pg +ynPlf+yg++GlGktHLl+a+gn +++++p+++vvY+++e+F++++vkal+++++eefk+ +r+vD+
  EHT98743.1 134 NNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDA 232
                 899************************************************************************************************ PP

                 EEEE-GGGGTT-HHHHHHHHHHHHHHHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHHHHH-- CS
    Bac_DnaA 101 LliDDiqflagkektqeelfhtfnalleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefiaervt 199
                 LliDDiqf+a+ke++qee+fhtfnalle ++q++l+sDr+Pke++ +edrl+srf +Gl+v+iepp+letr+ail+kk++++++ +p ev++fia+r++
  EHT98743.1 233 LLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLR 331
                 *************************************************************************************************** PP

                 S-HHHHHHHHHHHHHHHHH CS
    Bac_DnaA 200 dnvRelegalnrlkayasl 218
                 +nvRelegalnr+ a a++
  EHT98743.1 332 SNVRELEGALNRVIANANF 350
                 *************998765 PP

>> Bac_DnaA_C  Bacterial dnaA protein helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.9   8.3e+03      19      42 ..     307     330 ..     302     337 .. 0.75
   2 !  109.6   0.1   4.5e-35   5.4e-32       1      69 []     377     445 ..     377     445 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.9
                 HHS----CSSHHHHHHHHHHHHHT CS
  Bac_DnaA_C  19 lkskkRkkeiveaRqiamylarel 42 
                 l++k  +++i  +  +a ++a++l
  EHT98743.1 307 LMKKADENDIRLPGEVAFFIAKRL 330
                 566667888888889999999877 PP

  == domain 2  score: 109.6 bits;  conditional E-value: 4.5e-35
                 ..HHHHTHHHHTT--HHHHHS----CSSHHHHHHHHHHHHHTS---HHHHHHHHT-STTHHHHHHHHHH CS
  Bac_DnaA_C   1 iekIieaVaeyfgvsvedlkskkRkkeiveaRqiamylareltdlslpeIGkefggrdHsTVihaikki 69 
                 i++I+++Vaey++++v+dl+sk+R+++++++Rq+am +a+elt++slpeIG++fggrdH+TV+ha++ki
  EHT98743.1 377 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 445
                 799*****************************************************************8 PP

>> DnaA_N  DnaA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.4   9.7e-24   1.2e-20       2      63 ..       4      64 ..       3      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 9.7e-24
      DnaA_N  2 elWsavlerLkkelgeqsfdtWikplklfalknngltlivpneFardwiesnYldriaellk 63
                +lW+++l+rL++el++++f++Wi+pl++ +l++n+l l++pn+F+ dw++++Yl+ i+ ll+
  EHT98743.1  4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINALLN 64
                69*************************6.687999***********************9987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.3e-13   1.6e-10      50     151 ..     169     273 ..     144     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.3e-13
   IstB_IS21  50 ivllGpsGvGKshlaialgveavr..aglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekrye.rrsiii 145
                 + l G++G GK+hl  a+g   ++   + +v+++  e++v+ + +a +++ +++  + +  vd l++Dd+ +   ++ ++e++f+  ++  e ++ ii+
  EHT98743.1 169 LFLYGGTGLGKTHLLHAVGNGIIArkPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEgNQQIIL 267
                 7899**************99988744699*************************9999999***************************99873678999 PP

   IstB_IS21 146 tsnlpf 151
                 ts+   
  EHT98743.1 268 TSDRYP 273
                 998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-08   1.7e-05       2     111 ..     170     271 ..     169     291 .. 0.78
   2 ?   -0.2   0.0       1.1   1.3e+03      24      53 ..     385     414 ..     351     463 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.4e-08
                 EEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldg 95 
                  lyG  G GKT l +av + +     +++++ +   ++++++v++ +++  e fk+  ++     l+iD+i  +a+++     +++e+   ++ + l+g
  EHT98743.1 170 FLYGGTGLGKTHLLHAVGNGIiarkpNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV--DALLIDDIQFFANKE-----RSQEEFFHTFNALLEG 261
                 69******************877777799*******************9999999987664..99*********9999.....4555556666666665 PP

                 TTTSSSTEEEEEEESS CS
         AAA  96 vkkkeskvivigatnr 111
                  ++      +i+++ r
  EHT98743.1 262 NQQ------IILTSDR 271
                 555......5666666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
                 HEEEEEETTTCSSSSTTHHHHHHHHHHHHH CS
         AAA  24 vefleisgsellskyvgesekkirelfkea 53 
                 +e+++i++++llsk  + s ++ r++  ++
  EHT98743.1 385 AEYYKIKVADLLSKRRSRSVARPRQMAMAM 414
                 566777777777776666666655555442 PP

>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.7e-07    0.0012      36     146 ..     130     399 ..     117     430 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.7e-07
                 CTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTH............. CS
     Kinesin  36 keeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeek............. 121
                 +++ +++++Fd++++ +++q        ++ v +   G    +f YG tg GKT+ ++      +Gii+r  +     +++e+  +             
  EHT98743.1 130 RSNVNNRHNFDNFVEGKSNQLARAAA--RQ-VADNPGGAYNPLFLYGGTGLGKTHLLHAV---GNGIIARKPNAKVVYMHSERFVQdmvkalqnnaiee 222
                 56778899999999988777554433..45.555567777789**************986...567777764433333333232223466666677888 PP

                 ................................................................................................... CS
     Kinesin 122 ................................................................................................... 121
                                                                                                                    
  EHT98743.1 223 fkryyrsvdalliddiqffankersqeeffhtfnallegnqqiiltsdrypkeingvedrlksrfgwgltvaieppeletrvailmkkadendirlpge 321
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 .....................................................EEEEEEEEEEEEEETTEEEETTSTT CS
     Kinesin 122 .....................................................ekefsvkvsylEiYneeiyDLLesk 146
                                                                       +  +++ ++ E Y+ ++ DLL+++
  EHT98743.1 322 vaffiakrlrsnvrelegalnrviananftgraitidfvrealrdllalqeklVTIDNIQKTVAEYYKIKVADLLSKR 399
                 999999999999999999999999955555555555555555555555555442223445555555555555555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.015       3      98 ..     167     268 ..     165     288 .. 0.69
   2 ?    1.4   0.0      0.26   3.1e+02      53      76 ..     360     383 ..     325     420 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkla.dpekllelileklkeekktylflDEiqev.......pewekalkslvdegk 91 
                 ++l++ G    GKT ll+ + +  +   ++ +++y+  ++  +++ +  +++ +e++++  ++     l++D iq         +e++++ + l++   
  EHT98743.1 167 NPLFLYGGTGLGKTHLLHAVGNGIIarKPNAKVVYMHSERFVQDMVKaLQNNAIEEFKRY-YR-SVDALLIDDIQFFankersqEEFFHTFNALLEG-- 261
                 5788999999********999888888889999999988866655441333455666664.44.6788*********55555555555555555442.. PP

      AAA_14  92 nldvivt 98 
                 n ++i+t
  EHT98743.1 262 NQQIILT 268
                 2355555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
      AAA_14  53 lelileklkeekktylflDEiqev 76 
                  ++ l+ l + +++++ +D iq+ 
  EHT98743.1 360 VREALRDLLALQEKLVTIDNIQKT 383
                 2222222223578999*****986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.9     7e+03      82     118 ..      10      45 ..       4      69 .. 0.56
   2 !   16.9   0.1   5.3e-06    0.0064      11     117 ..     149     354 ..     144     413 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.9
      AAA_16  82 lrqlldeaesaeleawrekleealaavpelagaeasr 118
                 l+ l de+ ++e++ w + l+++l+  + la  +++r
  EHT98743.1  10 LARLQDELPATEFSMWIRPLQAELN-DNTLALYAPNR 45 
                 5555666666667777666666666.34444444433 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.3e-06
      AAA_16  11 qLlsalervrsgrp....elvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysa.laqalareellrqllde.............. 88 
                 qL++a  r  ++ p    + ++l+G  G GK+ l+ ++ + + ++  ++ +++ + +++      ++  ++al ++  +++ ++               
  EHT98743.1 149 QLARAAARQVADNPggayNPLFLYGGTGLGKTHLLHAVGNGIIARkpNAKVVYMHSERF------VQdMVKAL-QNNAIEEFKRYyrsvdalliddiqf 240
                 565666655555566779*********************95555556455555555555......22244554.3344444443333322223222333 PP

      AAA_16  89 ..aesaeleawrekleeala........................................................................avpelag 113
                    +++++e++ +++ + l+                                                                         v+el+g
  EHT98743.1 241 faNKERSQEEFFHTFNALLEgnqqiiltsdrypkeingvedrlksrfgwgltvaieppeletrvailmkkadendirlpgevaffiakrlrsNVRELEG 339
                 332222333333333333335555666666666666666666666666666666666666666666666666666666666666666655555555555 PP

      AAA_16 114 aea...........s 117
                 a+             
  EHT98743.1 340 ALNrviananftgrA 354
                 555555555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.5    0.0023       2.7       8     105 ..     169     244 ..     165     270 .. 0.47
   2 ?    1.6   0.0      0.26   3.2e+02      79     103 ..     361     384 ..     319     418 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr.s 105
                 l+++G +G GKT+ll  + +   +       r++ ++v   +s+    + +++++al++++          +e + ++ r+   + +l+iD++q++  +
  EHT98743.1 169 LFLYGGTGLGKTHLLHAVGNGIIA-------RKPNAKVVYMHSE---RFVQDMVKALQNNA----------IEEFKRYYRS---VDALLIDDIQFFAnK 244
                 678888888888888888887632.......2222222222222...34555555555222..........2222222222...333555555555441 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.26
      AAA_22  79 lealeqalraravielliiDEaqh.l 103
                 +eal++ l  +   +l+ iD++q+ +
  EHT98743.1 361 REALRDLLALQE--KLVTIDNIQKtV 384
                 234444444443..6*******9844 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.6e-05     0.067      59     111 ..     163     219 ..     119     285 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtylmdlf....feslpvekkrrvhfhafmarvhdeltklr 111
                    + + l+l+Gg G GKt+l+           p +k   +h  +f++++ + l++ +
   EHT98743.1 163 GGAYNPLFLYGGTGLGKTHLLHAVgngiIARKPNAKVVYMHSERFVQDMVKALQNNA 219
                  567788***************865111155667777788888888877777776655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.1e-05     0.072       2      62 ..     168     238 ..     167     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-................-HCHHHCCCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.............rsladllfsql 62 
                 +++l G  G GKT+Ll+ +   + ++k+++   k+v+++s r +++  +a             rs++ ll ++ 
  EHT98743.1 168 PLFLYGGTGLGKTHLLHAVGNGIIARKPNA---KVVYMHSERFVQDMVKAlqnnaieefkryyRSVDALLIDDI 238
                 5799***********************888...78988888877776666555556666666666666666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00012      0.14      18      63 ..     164     209 ..     161     287 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienl..edkdkyviyyialreesis 63 
                 + ++++f+YG  g GKt Ll  + +    ++ + +v+y+ + r  + +
  EHT98743.1 164 GAYNPLFLYGGTGLGKTHLLHAVGNGIiaRKPNAKVVYMHSER--FVQ 209
                 5689****************98877664344556777776533..333 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.011        13      19      90 ..     189     260 ..     186     283 .. 0.84
   2 ?    4.4   0.0      0.04        47      51     115 ..     332     397 ..     300     399 .. 0.79
   3 ?   -2.8   0.0       7.1   8.5e+03      76      91 ..     446     461 ..     402     467 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
     DUF3037  19 GVvlfskkegflkvrlelde.aRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprs 90 
                 G+++ +++++ + ++ e+   + ++al +++ +e+++++ +++++ + ++ ++ ++++++++e+f++++a  +
  EHT98743.1 189 GIIARKPNAKVVYMHSERFVqDMVKALQNNA-IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLE 260
                 99*************9999747777777655.***************99999888888888888888877554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.04
     DUF3037  51 ealeeelkaleeicegeka.agpiakldlaerfrwltaprstviqtsevhtgltedpeaelerLfe 115
                   ++e   al++++++++  + +i  + ++e +r l a ++ ++ + +++ +++e  + ++++L++
  EHT98743.1 332 SNVRELEGALNRVIANANFtGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLS 397
                 4566666677777777777455666699***********************999998888888875 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.1
     DUF3037  76 ldlaerfrwltaprst 91 
                 ++l+e  + ++++ s+
  EHT98743.1 446 EQLREESHDIKEDFSN 461
                 3333333333333333 PP

>> BLOC1S3  Biogenesis of lysosome-related organelles complex 1 subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.23      93     162 ..     306     377 ..     293     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
     BLOC1S3  93 LLhqKLrEsNarLrkdvkeavsqvysaaskelesv.tsqLnksqsaiqnashs.irlilddlkavsekldii 162
                  L +K +E ++rL  +v  ++ +  +++ +ele + ++ ++++  +   ++   +r +l+dl a++ekl  i
  EHT98743.1 306 ILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGAlNRVIANANFTGRAITIDfVREALRDLLALQEKLVTI 377
                 6889****************************97626667788888888886549*************9877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00037      0.44      11      64 ..     167     217 ..     157     405 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaa 64 
                 ++l++ +G G GKT++l+++ + +++++   p+  ++    +r ++ + ++l++
  EHT98743.1 167 NPLFLYGGTGLGKTHLLHAVGNGIIARK---PNAKVVYMHSERFVQDMVKALQN 217
                 6899**************9999999888...45555556667777777766633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3370.86
//
Query:       EHT98744.1  [L=46]
Description: 50S ribosomal subunit protein L34 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-24   85.4   9.8      2e-24   85.3   9.8    1.0  1  Ribosomal_L34  Ribosomal protein L34


Domain annotation for each model (and alignments):
>> Ribosomal_L34  Ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   9.8   1.1e-28     2e-24       1      44 []       1      44 [.       1      44 [. 0.99

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.1e-28
                   ---S----HHHHHCSSSHHHHHHSHHHHHHHHHHHTTSSS-SCC CS
  Ribosomal_L34  1 mkrtyqPskrkRkrkhGFraRmstknGrkvLkrRraKGRkrLsv 44
                   mkrt+qPs +kR+r hGFraRm+tknGr+vL+rRraKGR+rL+v
     EHT98744.1  1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
                   9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 385.94
//
Query:       EHT98745.1  [L=119]
Description: protein C5 component of RNase P [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-33  113.0   0.2    8.1e-33  112.8   0.2    1.0  1  Ribonuclease_P  Ribonuclease P


Domain annotation for each model (and alignments):
>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.2   4.5e-37   8.1e-33       1     108 [.       6     111 ..       6     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 4.5e-37
  Ribonuclease_P   1 lpkkerLkkraeFqavfregkrvaskdlvlyalknsleksslrlGlsvskkvgk.AvvRNrikRllReafrlnkdelpagldlvviakkgaaead 94 
                     +p++ rL ++++F++vf++ +r+++ +++++ + n+l+++  r+Gl+v+kk +k A++RNrikRl Re+frl+++elp ++d+vviakkg+a++d
      EHT98745.1   6 FPRELRLLTPTHFTFVFQQPQRAGTPQITILGRLNALGYP--RIGLTVAKKHVKrAHERNRIKRLTRESFRLRQHELP-SMDFVVIAKKGVADLD 97 
                     89**************************************..************************************.**************** PP

  Ribonuclease_P  95 faelekelekllkk 108
                     +  l++ lekl+++
      EHT98745.1  98 NRMLAEALEKLWRR 111
                     ************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1087.44
//
Query:       EHT98746.1  [L=85]
Description: uncharacterized DUF37 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-30  104.4   0.0    2.4e-30  104.2   0.0    1.0  1  YidD      Putative membrane protein insertion efficiency fact


Domain annotation for each model (and alignments):
>> YidD  Putative membrane protein insertion efficiency factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   1.3e-34   2.4e-30       2      66 .]      10      75 ..       9      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 1.3e-34
        YidD  2 kllialirlYqkvispll.ksCrfyptCSeYaleaiekyGllkGlllalkRilrCnplskgGyDpv 66
                ++li lir+Yq+ ispll ++Crf+ptCS+Y++ea++++G++kG++l+lkR+l+C+pl++gG Dpv
  EHT98746.1 10 RFLIVLIRVYQRGISPLLgPHCRFHPTCSQYGIEALRRFGVIKGSWLTLKRVLKCHPLNPGGDDPV 75
                689*************7779*********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       169  (0.00942607); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 792.72
//
Query:       EHT98747.1  [L=546]
Description: cytoplasmic insertase into membrane protein, Sec system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-91  307.1   3.5      2e-91  306.8   3.5    1.1  1  YidC_periplas  YidC periplasmic domain
      1e-60  204.4  14.6    1.7e-60  203.7  14.6    1.4  1  60KD_IMP       60Kd inner membrane protein
  ------ inclusion threshold ------
        1.1    9.1   6.2       0.12   12.2   1.1    2.0  2  DUF2427        Domain of unknown function (DUF2427)


Domain annotation for each model (and alignments):
>> YidC_periplas  YidC periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.8   3.5   3.4e-95     2e-91       1     283 []      58     341 ..      58     341 .. 0.93

  Alignments for each domain:
  == domain 1  score: 306.8 bits;  conditional E-value: 3.4e-95
                    .EEEE-SS-EEEEETBTTEEEEEEEEEEESSTT-SS.EEEECEEETTEEEEEEEEEESTT-.TTSGG..S--B-B-S-SEEE--TT-SEEEEEEEE CS
  YidC_periplas   1 ritvdtdvlegsislkGgriddleLkkYketldkdskpveLlspegaetyvaqsglvgagggkaldp..rktvftaeegeyelaeltdelpvtLtw 94 
                    +itv+tdvl+++i+++Gg++d++ L+ Y+ +l +d+ p+eLl+++++  y aqsgl+g + g+++++  ++ ++t++++++ela++++el+v++t+
     EHT98747.1  58 TITVKTDVLSLTINTRGGDVDQALLLTYPDKLGSDK-PFELLETTPSFVYQAQSGLTGRN-GPDNPNngARPLYTTAQDHFELADGQSELRVPMTF 151
                    59*********************************9.********************877.677776788888*********************** PP

                    E-TTS-EEEEEEEEETT-SEEEEEEEEE--SSS-EEEEEEEEEEEE...--.------.----.--EEEEEEETTTCCEEEEHHHHHT..T---EE CS
  YidC_periplas  95 dngnGltftktytldrdsYlitvtdeveNtsgapvtlapygqlkrd...peeaseees.mfai.tyegaagvtdeeklqkvkfkdlekdkkakkek 185
                    +++nG+++tkt++++r++Y+++v+++++Nts++p++++++gqlk++   p+  ++++s  fa+ t++g a++t+e k++k+kf++++++++   ++
     EHT98747.1 152 TAENGVVYTKTFVFKRGDYAVNVDYNINNTSQQPLEVSMFGQLKQTidlPKH-RDTGSnNFALhTFRGTAYSTSESKYEKIKFDTIADNEN--LNT 244
                    **********************************************986444.34444457777**********************88755..567 PP

                    EEES-EEEEEETTEEEEEEEE.SSSEEEEEEEEEE.TEEEEEEEE.--EEE-TT-EEEEEEEEEEEE--HHHHHHH.TTGGGHHHHHHHHHHTSHH CS
  YidC_periplas 186 ktgggWvamtqkYFlsAlipdqdaetnefyarkkkkdlyqagylsapavtvapgasasvtarlfaGPkevktlkai.pgLdlavDyGwltfitkpl 280
                    +t++gWvam+q+YF++A++p + + tn++y++  +++++++gy+s ++vtvapga+++++a+l++GP+++++++ai p+Ldl+vDyGwl+fi++pl
     EHT98747.1 245 TTTNGWVAMLQQYFATAWVPRT-QGTNTLYTSNLGNGVAAIGYKS-APVTVAPGAQQTLDATLWVGPEIQDKMAAIaPHLDLTVDYGWLWFISQPL 338
                    79999***************95.66*********989*******6.******************************9******************* PP

                    HHH CS
  YidC_periplas 281 fwl 283
                    f+l
     EHT98747.1 339 FKL 341
                    *86 PP

>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.7  14.6   2.9e-64   1.7e-60       1     166 []     352     531 ..     352     531 .. 0.92

  Alignments for each domain:
  == domain 1  score: 203.7 bits;  conditional E-value: 2.9e-64
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekykkdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla.....sf. 93 
                 +g++Ii++t+ivr i++plt+ q++s+akm+ lqP++++++e+  +dkqk++qemm+lYk e+vnpl+Gclpl+iq+pif+aly++l+         f 
  EHT98747.1 352 WGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQKQSQEMMALYKAEKVNPLGGCLPLVIQMPIFLALYYMLSGSVelrhaPFi 450
                 9***************************************************************************************96656554228 PP

    60KD_IMP  94 .wikdLsapd....lpillavttflqqklsksk...km.qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliink 166
                  wi+dLsa+d    lpil+++t+f+ qk+s+++    m qk+m + mp+++++f+l fp+glvlY++vsnl++i+qq +i++
  EHT98747.1 451 lWIHDLSAQDpyyiLPILMGITMFFIQKMSPTTvtdPMqQKIM-TYMPVIFTVFFLWFPSGLVLYYIVSNLVTILQQQLIYR 531
                 8*******9999******************6633443336777.89*******************************99975 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.85   5.1e+03      22      35 ..     357     370 ..     354     372 .. 0.86
   2 ?   12.2   1.1     2e-05      0.12       5      49 ..     479     523 ..     476     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.85
     DUF2427  22 iilmtlalvvvyPv 35 
                 ii+++++ +++yP+
  EHT98747.1 357 IIITFIVRGIMYPL 370
                 7889999999**97 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2e-05
     DUF2427   5 ttyfttdephksalwvHiilmtlalvvvyPvalvLslaksrwylp 49 
                 ++ +t+ +p+++ +++++ ++++++++ +P +lvL  + s++   
  EHT98747.1 479 MSPTTVTDPMQQKIMTYMPVIFTVFFLWFPSGLVLYYIVSNLVTI 523
                 66788999***************************9988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.35
# Mc/sec: 4678.87
//
Query:       EHT98748.1  [L=454]
Description: 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-60  203.4   1.4    5.3e-60  203.1   1.4    1.1  1  MnmE_helical  MnmE helical domain
    2.3e-37  127.8   0.0    7.7e-37  126.1   0.0    1.9  2  TrmE_N        GTP-binding protein TrmE N-terminus
    1.2e-25   89.8   0.0    1.4e-24   86.4   0.0    2.2  2  MMR_HSR1      50S ribosome-binding GTPase
    1.8e-08   34.0   0.0    7.5e-08   32.0   0.0    2.0  1  FeoB_N        Ferrous iron transport protein B
    4.8e-05   23.5   0.0    0.00068   19.7   0.0    2.2  2  Dynamin_N     Dynamin family
    0.00021   21.2   0.0     0.0068   16.3   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    0.00022   20.8   0.0    0.00039   20.0   0.0    1.4  1  Ras           Ras family
    0.00032   20.1   0.0    0.00051   19.4   0.0    1.3  1  AIG1          AIG1 family
     0.0011   19.1   0.0     0.0025   18.0   0.0    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0013   19.3   0.0     0.0022   18.5   0.0    1.5  1  ABC_tran      ABC transporter
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.026   14.8   0.0    1.7  1  AAA_28        AAA domain
      0.014   14.9   0.0      0.024   14.1   0.0    1.5  1  SRPRB         Signal recognition particle receptor beta subun
      0.022   14.2   0.0      0.056   12.9   0.0    1.7  1  Arf           ADP-ribosylation factor family
      0.057   12.8   0.0        0.1   11.9   0.0    1.4  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
       0.18   11.3   0.0        6.1    6.3   0.0    2.4  1  GTP_EFTU      Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   1.4   4.4e-63   5.3e-60       1     206 []     123     451 ..     123     451 .. 0.95

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 4.4e-63
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeedleelseeelaekleelkeelekllatakrgellreGik. 96 
                   L+qaEa+adlIdA++e+aa++a+++l+G++s ++++l e l++l+ ++eaaiDFp+e++++ls+ +++ +l++++++l+++ a+a++g+llreG+k 
    EHT98748.1 123 LAQAEAIADLIDASSEQAARSAVNSLQGAFSVRVNQLVEALTHLRIYVEAAIDFPDEEIDFLSDGKIEGQLNAVIRDLDAVRAEARQGSLLREGMKv 219
                   89*********************************************************************************************** PP

                   ................................................................................................. RF
  MnmE_helical  97 ................................................................................................. 96 
                                                                                                                    
    EHT98748.1 220 viagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidtaglreasdeverigierawheieqadrvlfmvdgtttqatepaei 316
                   ***********************************************************************************************99 PP

                   .....................xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical  97 .....................Dllkeke...ekeeeevlkiSaktgegieeLeeaike.leleeieeeplltnaRhkealekalealeeakealeag 168
                                        D++ e+    + + ++ +++Sa+t+egi++L++++k+ + +++  e+ +l+++Rh++ale a+++le+ k++l  +
    EHT98748.1 317 wpdfvarlpsqlpitvvrnkaDITGETLgltDVNGHALIRLSARTSEGIDTLRDHLKQtMGFADNMEGGFLARRRHLQALELAATHLEQGKHQLLGA 413
                   999999999999999999888655555577668888899*******************5556454567***************************** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 169 lpldlvaedLrealeaLgeItGevvtedlLdeIFskFC 206
                   ++ +l+ae+Lr a++aL+eItGe++++dlL++IFs+FC
    EHT98748.1 414 WAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFC 451
                   99************************************ PP

>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   6.4e-40   7.7e-37       1     115 []       6     120 ..       6     120 .. 0.96
   2 ?   -2.2   0.0       4.2     5e+03      84      84 ..     409     409 ..     349     439 .. 0.50

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 6.4e-40
                 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTEEET--CTEEEEEEEECT..TCEEEEEEEEEEBTTCSTTSSEEEEEEEESSHHHHHHHHHHHHCT.T- CS
      TrmE_N   1 TIaAlatpagkgaiaiiRvsGpkaleiakklfkkelkprkallgklvdeeekevlDevlvlvfkaprsyTgedvvElhlhGgpavvkavleallka.ga 98 
                 TI+A atp+g+g+++i+RvsGp+a+e+a++++ k +kpr+a + ++ d+ +++vlD++++l+f++p+s+Tgedv+El+ hGgp++++ +l+++++  g+
  EHT98748.1   6 TIVAQATPPGRGGVGILRVSGPQAAEVARQVLGKLPKPRYADYLSFNDS-DGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALpGL 103
                 9*********************************************977.7779*************************************9976657* PP

                 EE--CTHHHHHHHHTTS CS
      TrmE_N  99 rlAepGEFtkRaflngk 115
                 r+A+pGEF++Rafln+k
  EHT98748.1 104 RIAQPGEFSERAFLNDK 120
                 ***************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.2
                 H CS
      TrmE_N  84 a 84 
                  
  EHT98748.1 409 Q 409
                 0 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.44   5.3e+02      51      94 ..      98     142 ..      87     164 .. 0.67
   2 !   86.4   0.0   1.2e-27   1.4e-24       1      93 [.     218     310 ..     218     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.44
                 EECGGCSS....HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHH CS
    MMR_HSR1  51 vDtpGlie....gaseekglgkaflaleeadlillvvdaseeklkpld 94 
                 v +pGl      g+ +e+ + ++ l+l +a++i+ ++das+e+  + +
  EHT98748.1  98 VALPGL-RiaqpGEFSERAFLNDKLDLAQAEAIADLIDASSEQ--AAR 142
                 557884.31123344455666666678889********99552..233 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 1.2e-27
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS.HHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie.gaseek.glgkaflaleeadlillvvdaseeklkpl 93 
                 +v+i+GrpN+GKS+L+nal g+ +aiv+d++gtTrd+ +++++++g +++++Dt+Gl e +++ e+ g+++a++++e+ad +l++vd +++   + 
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGReAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREaSDEVERiGIERAWHEIEQADRVLFMVDGTTT---QA 310
                 699******************9679*******************************65553333336********************5422...22 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   6.3e-11   7.5e-08       2      91 ..     218     308 ..     217     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 6.3e-11
                 EEEEEESTTSSHHHHHHHHHTTSEE.EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqk.vgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnl 91 
                 +v+++G pn+Gk++l+nal+g +   v   +G+t +  + +++++g  ++i+D  G  + s+  e   + r     e++d v+ +vd t+ 
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGREAAiVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFMVDGTTT 308
                 799******************9865289****************************99888888888888888889999999999998875 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.7e-07   0.00068       1      34 [.     219     253 ..     219     260 .. 0.82
   2 ?    1.3   0.0      0.26   3.1e+02     102     144 ..     265     311 ..     254     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.7e-07
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrr 34 
                 +++ G  ++GKSS+lnaL g++   +  +  tTr 
  EHT98748.1 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIaGTTRD 253
                 7899*****************99886665256665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
                 SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsn 144
                  l ++D+ Gl +  ++ +    e + + i++ad +l++++  +  ++
  EHT98748.1 265 PLHIIDTAGLREASDEVErigiERAWHEIEQADRVLFMVDGTTTQAT 311
                 5889*******988887788988888899999999999998887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.7e-06    0.0068     100     163 ..     217     276 ..     196     279 .. 0.76
   2 ?    2.3   0.0      0.12   1.4e+02      44     100 ..     325     375 ..     293     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.7e-06
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEE...EESS-SSSS CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaeggl...liDtPGfre 163
                    +v++G   +GKS+L+nal++++ + + ++         TT+ v   +++ +g+   +iDt G+re
   EHT98748.1 217 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG-------TTRDVLREHIHIDGMplhIIDTAGLRE 276
                  56899******************9999999987.......666654444444443333888888876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                  HTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdk 100
                   +++++++v nK+D++ e+         +   g +++ +sa+t+eg+++l+++lk+ 
   EHT98748.1 325 PSQLPITVVRNKADITGETL------GLTDVNGHALIRLSARTSEGIDTLRDHLKQT 375
                  56777888888888877776......33444577889999***********999975 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.3e-07   0.00039       1     118 [.     218     341 ..     218     384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.3e-07
                 EEEEEESTTSSHHHHHHHHH..HSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETT....SGGGHHHHH....HHHTTESEEEEEEETTBHHHHHT CS
         Ras   1 KlvlvGdsavGKtslllrfv..kdkFkeeyesTigvdfytkeievdgkevkleiwDTAG....qeefkslre....lyyrdaegillvyditsresfen 89 
                 K+v+ G  + GK+sll+  +  +    ++   T   d ++++i++dg  + l+i DTAG     +e +++        +++a+ +l + d t +++ e 
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAgrEAAIVTDIAGTT-RDVLREHIHIDG--MPLHIIDTAGlreaSDEVERIGIerawHEIEQADRVLFMVDGTTTQATEP 313
                 89***************99832455778888888.999999999998..5689******5333244444432111134678888888888899999999 PP

                 HHHHHHHHHHHSTTTSEEEEEEETTTGGG CS
         Ras  90 vkkwveeikrvaeenvpivLvGnKvDlee 118
                 ++ w + + r  + ++pi +v nK+D++ 
  EHT98748.1 314 AEIWPDFVARLPS-QLPITVVRNKADITG 341
                 9998888887777.6***********986 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.2e-07   0.00051       2      71 ..     218     286 ..     217     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.2e-07
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkisk 71 
                 ++v+ G+  +GkS+  N++ g++a       ++ t+ + +++   dg  +++iDT gl + s++ ++i  
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGI 286
                 699*******************996665.57999***************************999887754 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.1e-06    0.0025       1     119 [.     218     338 ..     218     339 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.1e-06
                 EEEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTT.TT-HHHH.......CTSCEEEEEEEGH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfr.slhplyl.......reaalailvydsr 90 
                 Kvv+ G  ++GK+sll+ +  ++       + +  d+l++++          +++ + l+i DtaG  + + +++++ +       ++a+ +++++d +
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVtDIAGTTRDVLREHI----------HIDGMPLHIIDTAGLREASdEVERIGIerawheiEQADRVLFMVDGT 306
                 9*******************7776432022223333333332..........344578********654441444433311111226778888999954 PP

                 HH...HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  91 ss...enlkeWlkelkkvagkspvilvgnkiD 119
                 +    e ++ W + + +  ++ p+ +v nk+D
  EHT98748.1 307 TTqatEPAEIWPDFVARLPSQLPITVVRNKAD 338
                 4411144678********************99 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.9e-06    0.0022       8      43 ..     213     260 ..     211     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE............E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGei............l 43 
                 l+eg kv+i G+  aGKS+Ll++lag +     +i            +
  EHT98748.1 213 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIagttrdvlrehiH 260
                 67999**********************998665552332333333333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.2e-05     0.026       1      48 [.     218     268 ..     218     310 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-05
      AAA_28   1 kivitGgestGKTtlleaLaargypvv...pEaareileeklakgedalpw 48 
                 k+vi G + +GK++ll+aLa r+  +v   + + r++l+e+   ++  l+ 
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVtdiAGTTRDVLREHIHIDGMPLHI 268
                 79******************9977777233556677888877666655554 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-05     0.024       5     124 ..     218     339 ..     214     355 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                 EEEEE-STTSSHHHHHHHHHHS.S---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHH.....HHHHHHHGGEEEEEEEEETTS-HHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttd.svkktvtSq.essaalkvksekgskltliDfPGheklrqkl.....leklkaksslkglvfvvDStidpkevkevA 96 
                 +v+++G  ++GK sl++ L    ++  t ++     +  +    +g  l++iD  G  +   ++          + +++ +++f+vD t  +  ++e A
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGReAAIVTDIAGtTRDVLREHIHIDGMPLHIIDTAGLREASDEVerigiERAWHEIEQADRVLFMVDGTTTQ--ATEPA 314
                 799****************976433444444424444444458899**********76665554111204455566779*********9875..68888 PP

                 HHHHHHHHHHHHHTT---EEEEEE-TTS CS
       SRPRB  97 EllyeilliteklkdavdiliACnKqel 124
                 E   + +     l+ +++i +  nK ++
  EHT98748.1 315 EIWPDFVAR---LPSQLPITVVRNKADI 339
                 887776543...3466667776777666 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-05     0.056      12     127 ..     214     339 ..     207     376 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE....CSSSSSEEEEEEEETTEEEEEEEE-SSGG.........GGGGGGGGCTTESEEEEEEETT-CTTH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt....tvPTigfnveeleiknlkftvwDvGGqek.........lRplWknYfektdavifvvDsadreRl 97 
                 +  +++++ G  naGK+ +l+ l   e +        T     e+++i ++ +++ D  G ++         + + W++  e+ d v+f+vD + ++  
  EHT98748.1 214 REGMKVVIAGRPNAGKSSLLNALAGREAAIvtdiAGTTRDVLREHIHIDGMPLHIIDTAGLREasdeverigIERAWHE-IEQADRVLFMVDGTTTQAT 311
                 4679*******************9988766223222344555689999*********9997652222222224577866.6788888888888777654 PP

                 HHHHHHHHHHCTSGCCTTSEEEEEEE-TTS CS
         Arf  98 eeakeeLkalleeeelkevallvlaNKqDl 127
                 e a  e+   +  +  ++ ++ v+ NK D+
  EHT98748.1 312 EPA--EIWPDFVARLPSQLPITVVRNKADI 339
                 443..2322233333445566666666665 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.7e-05       0.1       1      98 [.     218     317 ..     218     343 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.7e-05
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvg...vliyVfDvesreleedle 96 
                 kv++ G+ ++GK+s+ + +     a  t   g+t dv +++++  + + l+++D  G ++  +e  +   e+  ++++    +++++D ++++ +e  e
  EHT98748.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVERIGIERAWHEIEqadRVLFMVDGTTTQATEPAE 315
                 79999**************999999999999***********6.7889**************9987777777777776555788999988887766655 PP

   Gtr1_RagA  97 tl 98 
                  +
  EHT98748.1 316 IW 317
                 55 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0051       6.1      67     135 ..     261     340 ..     214     401 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0051
                 CSSEEEEEEEESSSGGGHHHHHHH........HHT-SEEEEEEETTTBSTHHHHHHHHHHHH...TTTEEEEEEESCGST CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirg........lrvlDgavlvvdaveGvepqteevlrlalk...egvpiivfiNKmDrl 135
                  +   +++iDt G ++ s+ev+r         ++++D ++++vd +    +   e++    +    ++pi v+ NK+D +
  EHT98748.1 261 IDGMPLHIIDTAGLREASDEVERIgierawheIEQADRVLFMVDGTTTQATEPAEIWPDFVArlpSQLPITVVRNKADIT 340
                 44455566666666666666665444444555556666666666555555555555433222111345566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3200.81
//
Query:       EHT98749.1  [L=196]
Description: putative reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-14   53.2   0.1    8.6e-14   51.9   0.1    1.5  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   4.8e-18   8.6e-14       5     170 .]      18     174 ..      15     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 4.8e-18
                     -B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE--- CS
  Nitroreductase   5 rSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivivat 99 
                     r++ + ++epv++  lek+ ++ + aP++ n  p rfv v++ e ++kl++a+++ +l+++ +a      +        ++ +++  ++++  a+
      EHT98749.1  18 RTHSHWQPEPVQQSLLEKLYQMVALAPTSANCSPGRFVFVTSAEGKEKLKPALASGNLEKTLRAPVTVIIA-------WDSEFYQHLTMLFQHAD 105
                     899999*************************************************9999998888888754.......77777777777777799 PP

                     TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase 100 ldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     + ++ +++++   ++a+ ++++ a  l++aA+alGl++ p++gfd  +  v++ +     ++  +li +Gy
      EHT98749.1 106 ARNWFTNTPDLVKETAFRNSSLQAGYLIMAARALGLDAGPMSGFDPLK--VNAAFFAGTSWQANLLINLGY 174
                     99999****************************************888..777665554488888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1424.60
//
Query:       EHT98750.1  [L=437]
Description: xanthine/uracil/thiamine/ascorbate permease family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-43  147.7  51.5    3.7e-43  147.7  51.5    1.5  2  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7  51.5   2.1e-47   3.7e-43       3     387 ..      23     396 ..      21     398 .. 0.94
   2 ?   -0.6   0.1     0.024   4.3e+02      96     131 ..     395     429 ..     392     435 .. 0.72

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 2.1e-47
                      HHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHHH CS
  Xan_ur_permease   3 llllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllgal 96 
                      ++++g++++l+m++ + v+P ++g a    +++r ++ +t+l+++ +++l+ l+++++++++ +++++++ a++++ ++    +++ ++ +ga+
       EHT98750.1  23 EVIAGITTFLTMVYIVFVNPQILGVA---GMDTRAVFVTTCLIAAFGSILMGLFANLPVALAPAMGLNAFFAFVVVGAM----GYSWQVGMGAI 109
                      799***********************...38999*************************************99999995....99999999999 PP

                      HHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHH CS
  Xan_ur_permease  97 lvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpiLig 190
                      +  ++  +++ l+ +r + + +ip    ++++ +iGl++a  ++k++g++ a+ +   v +++l +  v + ++++ ++  l   +   ++Li 
       EHT98750.1 110 FWGALGLLILTLLRVRYWMIANIPLSLRVGITAGIGLFIAMMGLKNAGIIVANPDT-LVSVGNLSSHNVLLGALGFFIIAILASRNIHAAVLIS 202
                      99999999999999999*********************************988777.8999999999*************************** PP

                      HHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII..IIIHHHHHHHHHHHHHH CS
  Xan_ur_permease 191 iiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkp..kpdlrralladGlatll 282
                      +i++++l + +g v ++++vs+ p ++   +    + +fn+g+  ++++++lv++++s G++++v + +g+ +++   p+++ al +d+++++ 
       EHT98750.1 203 MIVTTALGWLLGDVTFTGVVSAPPSVTAIVGQVDIKGAFNIGMAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKgtFPRMKQALYVDSISSVT 296
                      ******************99999999886555555566********************************99999999**************** PP

                      HHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHH CS
  Xan_ur_permease 283 sgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnllivavs 376
                      ++l G++ vt+y+e++ +va++    +r++++a v  +l+ l+++l+ l++++P+++  G +l+++g+++ +++s +++ dl++a  ++++a +
       EHT98750.1 297 GALAGTSSVTAYIESTSGVAVG----GRTGLMAVVTGLLFLLVTFLSHLAAMVPAYAAAG-ALIYVGVLMTASLSRVKWDDLTEAVPAFVTAAM 385
                      **********************....*******************************666.5789***************************** PP

                      HHHHHH----- CS
  Xan_ur_permease 377 lvlGlgvatvp 387
                      + +  +++ ++
       EHT98750.1 386 MPFSFSITEGI 396
                      **999988765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.024
                      HHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHH CS
  Xan_ur_permease  96 llvagvlfilisltglrgrlarlipPvvtgpvvlli 131
                      +++ g+++  ++++g++ r +++ p vv+++++ ++
       EHT98750.1 395 GIALGFIAYCVMKLGTG-RWREISPCVVIVALLFVL 429
                      56778888888888884.778888888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2980.92
//
Query:       EHT98751.1  [L=220]
Description: Phosphoenolpyruvate and 6-phosphogluconate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-22   78.3   0.0    8.5e-22   78.1   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.6e-12   48.2   0.1    3.5e-11   43.8   0.1    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
      7e-05   23.3   0.0    0.00011   22.7   0.0    1.4  1  HAD             haloacid dehalogenase-like hydrolase
     0.0012   18.8   0.0     0.0022   18.0   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.045   13.9   0.0       0.39   10.8   0.0    2.2  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
       0.14   11.9   0.0        1.1    9.0   0.0    2.1  1  NIF             NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   2.8e-25   8.5e-22       1     176 [.       6     182 ..       6     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 2.8e-25
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee....kieellrkyneekkkkevkpydgvkelLeeLkeag 95 
                 + FD DgTl+d+e l   a+ +++++yg+    +e ++k+ g +l +++r + e+ ++        + + r+ ++++ ++e+kp+ g+k l+ ++    
  EHT98751.1   6 VFFDCDGTLVDSEVLCTRAYVTTFAQYGITLSLQEMFEKYKGVKLYDIIRDVSETHRVALpledVEPAY-RREVARLFDRELKPIAGAKALVGQM---A 100
                 57***************************9999999******************988877666333344.4444444447************998...8 PP

       HAD_2  96 yklgivTsksreaveekleqlgiesyF.dvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 + + +v++++ ++++++l  +g+ ++F d  +++ d+++ KP+pe++  a +++++  e++i v Ds  +  a+ +ag+ v+
  EHT98751.1 101 VPICVVSNGTVKKMQHSLGLTGMLNHFaDRLYSGYDIGHWKPEPELMFHAAQQMQVPVERCILVDDSEAGARAGIAAGMPVF 182
                 9*********************9877747899***********************************************885 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   1.2e-14   3.5e-11       2     210 .]       4     178 ..       3     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.2e-14
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                 ++v+fD+dGTL+++e  +++++v                        a  +++ +l + f++++g   y i +    t+            ++  ++ +
  EHT98751.1   4 ECVFFDCDGTLVDSEVLCTRAYVTT---------------------FAQYGITLSLqEMFEKYKGVKLYDIIRDVSETHR----------VALPLEDVE 71 
                 79*************7777777777.....................6666666666567777544444444444333333..........666777777 PP

                 HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyf.daviasdietvakpspegkvaaireLqgkpeevamV 196
                  a+   r++a +    +lk+  +a+ +v +   + +++++++++  +  ++ +   G  ++f d  +++++ ++ kp+pe + +a++++q++ e+++ V
  EHT98751.1  72 PAYR--REVARLFD-RELKPIAGAKALVGQ---MAVPICVVSNGTVKKMQHSLGLTGmLNHFaDRLYSGYDIGHWKPEPELMFHAAQQMQVPVERCILV 164
                 7777..66666544.455799999999999...569**************999999**88888************************************ PP

                 ESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxx RF
   Hydrolase 197 GDgvnDaaalaaAg 210
                 +D+  +a a+ aAg
  EHT98751.1 165 DDSEAGARAGIAAG 178
                 ************98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.7e-08   0.00011       1     111 [.       6     110 ..       6     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.7e-08
         HAD   1 alfDfDgTLldgdsle..lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaah 97 
                 ++fD DgTL+d++ l   ++++ +++ g    ++++ ek++   ++++ r+   +  + ++  l++ +++  +e++r+++++ +p     ga++l+   
  EHT98751.1   6 VFFDCDGTLVDSEVLCtrAYVTTFAQYGITLSLQEMFEKYKGVKLYDIIRD--VSETHRVALPLEDVEPAYRREVARLFDRELKPI---AGAKALVG-- 97 
                 79**********888889888879999999999999999999999998888..3334444446999999**********9999998...6*******.. PP

         HAD  98 raaGdrvvvvSggl 111
                  +  ++++vvS+g 
  EHT98751.1  98 -QMAVPICVVSNGT 110
                 .99********985 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.3e-07    0.0022       4      53 ..     141     189 ..     139     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.3e-07
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvt 53 
                     KPepe++  a+++++++ e+++++ D+ ++  +++ +aG+    +   ++
      EHT98751.1 141 KPEPELMFHAAQQMQVPVERCILVDDS-EAGARAGIAAGMPVFYYCADAH 189
                     9**************************.************8776655555 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.39       1      46 [.       6     116 ..       6     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                  EEEESTTTSE....................................................................ETTEE-TTHHHHHHHHHHTT CS
  Hydrolase_6   1 flfDidGvLw....................................................................rgdkaipgaaealnalraag 30 
                  ++fD+dG+L+                                                                    r+ k+i ga+ ++    ++ 
   EHT98751.1   6 VFFDCDGTLVdsevlctrayvttfaqygitlslqemfekykgvklydiirdvsethrvalpledvepayrrevarlfdRELKPIAGAKALVG---QMA 100
                  68********8888888888888888888888888888887777777777777777777777777777777777777777777777777764...445 PP

                  -EEEEEE---SS-HHH CS
  Hydrolase_6  31 kpvvllTNnsskseee 46 
                  +p+++++N++ k+ ++
   EHT98751.1 101 VPICVVSNGTVKKMQH 116
                  7888888888877655 PP

>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00037       1.1       2     150 ..       5     205 ..       4     210 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00037
         NIF   2 tLVLDLDetLvhskleksk.......klkve......gekvevsvlkRpgldefLkelsklyevvi.fTasseeyaeavidildpekkllshr..lyre 84 
                 ++ +D+D+tLv s++  ++       +   +      +e   +  +k   l ++++ +s+   v +      + y ++v + +d+e k +     l+ +
  EHT98751.1   5 CVFFDCDGTLVDSEVLCTRayvttfaQ---YgitlslQEM--FEKYKGVKLYDIIRDVSETHRVALpLEDVEPAYRREVARLFDRELKPIAGAkaLVGQ 98 
                 677899999998886333234554442...1233434444..777888888888888888888888777777888888888887776654333343333 PP

         NIF  85 scv..kk.kgeyvKdLsl.....................................lgrdlsrvvivDdspdsfelqpengipiksffsdkkDneLlk.l 142
                  +v     ++ +vK+++                                      ++ + +r ++vDds+  +++  + g p+  +  d +  eL + l
  EHT98751.1  99 MAVpiCVvSNGTVKKMQHslgltgmlnhfadrlysgydighwkpepelmfhaaqqMQVPVERCILVDDSEAGARAGIAAGMPVFYYCADAHNPELHHpL 197
                 333443336667777776555555555555555554444444444443332222224488999999999999999999999999888888888888877 PP

         NIF 143 lpllkela 150
                   +++++a
  EHT98751.1 198 VTVFTDMA 205
                 77777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1593.69
//
Query:       EHT98752.1  [L=331]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-27   96.0  37.2    2.9e-27   95.6  37.2    1.0  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
       0.01   14.7   5.5       0.02   13.7   5.5    1.5  1  O-antigen_lig  O-antigen ligase like membrane protein
      0.015   15.4  10.9       0.08   13.2   3.3    3.3  2  DUF1600        Protein of unknown function (DUF1600)


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6  37.2   4.9e-31   2.9e-27       2     339 ..       6     318 ..       5     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 4.9e-31
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHaliayspdagrgspiqasqssqiaflggfgvplFFllSGfflaamlyrrrglsklikrRilrlliplliwllliilli 97 
                    +++D lR+iA+l+V+++H+   y ++++   +  + +    +  ++++vplFF++SG+++        g ++   r + rll +l++++ + ++ i
     EHT98752.1   6 YWIDNLRAIACLMVIVIHTTTWYLTGPMAIKGHWWDIANLFNSASRICVPLFFMISGYLF-------FGERSTQPRHLWRLLGCLVFYSAVSLVYI 94 
                    8********************88777766655544444444699****************.......68888999999****99999999999999 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  98 alvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhelfgpatsvgllpl 193
                    +l        + ++ ++              p+++hlWf +al+++yll+pl+  +  +++++++ll+li+++l    ++ + +  + +   +l l
     EHT98752.1  95 SLLTPIGEGRSILKMLQK-------------PVFYHLWFFFALMGIYLLSPLI-QVKSVRPRYVALLVLIVVVLANPNTMDQSWGRFHWLPINLYL 176
                    999999999999999988.............9******************997.777788888888888888888888888888888777776655 PP

                    xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 194 psvla..llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfalpsrsafkllr 287
                    +   +  ll+ l+G  ++  d +   ++  + ++++ +++ + +i l+       +g ++ +++ ++  l+++++i +l+++ +a+++r+    l 
     EHT98752.1 177 SGDSIyyLLYALLGRAIGTMDTE---RRAITPLAAVTFVACVTGIMLGTKRALIVNGAFNDTWYLYCGPLVFIAAISALVVFKNAFNQRTLPG-LA 268
                    55532333333333333333333...3333333333333333333344444443389999999999999999999999999999999999888.** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 288 ylgkiSygiYliHlpllmllqkllrdwglnlgevlllvlllvvsvivsvvll 339
                     ++++S+ iY +H ++++++++  +d +    ++l l +++ v++++s++l 
     EHT98752.1 269 IISRYSLPIYGFHALFIHFIRTHHYDDMAR--PWLDLPAVFTVTLVGSLLLG 318
                    ********************9999999777..99999999999999999885 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.5   3.3e-06      0.02      37     218 ..      51     227 ..      40     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-06
  O-antigen_lig  37 tiiRvlfliiaviylffkkkskkkkkiiiYllllaiylilhllnvlnlkslgdlvtelkyivkliylivl.llalvlifkkkkelkiekeklikvl 131
                     i+ +lf + + +ylff ++s ++  ++ +l+ l+ y+ + l++ + l+ +g   + lk+++k ++  ++ ++al+ i+   + l i+ +++   +
     EHT98752.1  51 RICVPLFFM-ISGYLFFGERSTQPRHLWRLLGCLVFYSAVSLVYISLLTPIGEGRSILKMLQKPVFYHLWfFFALMGIYL-LSPL-IQVKSVRPRY 143
                    555555554.45799************************************************76666651567788888.6666.5555899999 PP

  O-antigen_lig 132 liasliysvlilislitgtslktYeseskiGykGwfysaNelssilllllpivllyllkkkks.ikfiiillllillllllGTKvalf 218
                    ++ +++++v+++ ++ +++s   +  +       ++ s+ ++  +l +ll  ++ ++ ++++    +  ++++  ++ ++lGTK al+
     EHT98752.1 144 VALLVLIVVVLANPNTMDQSWGRF-HWL---PINLYLSGDSIYYLLYALLGRAIGTMDTERRAiTPLAAVTFVACVTGIMLGTKRALI 227
                    9*******************9999.555...4579*******************8887777776677778888888999*****9875 PP

>> DUF1600  Protein of unknown function (DUF1600)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.3   1.3e-05      0.08       7      58 ..      50     100 ..      41     140 .. 0.81
   2 ?    4.8   0.6    0.0051        31       2      60 ..     232     290 ..     231     298 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
     DUF1600   7 lhvlnPilFlvlgfllfkttkkrkiknlfktllkviiYpliyliYlitipfv 58 
                   +  P+ F++ g+l f  ++++++++l+  l  ++ Y ++ l+Y+  +  +
  EHT98752.1  50 SRICVPLFFMISGYL-FFGERSTQPRHLWRLLGCLVFYSAVSLVYISLLTPI 100
                 56788999*****99.8889999***********************887666 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0051
     DUF1600   2 fsniwlhvlnPilFlvlgfllfkttkkrkiknlfktllkviiYpliyliYlitipfvkt 60 
                 f++ w+    P++F+ ++  l++++++++ + l   ++     + iy ++ + i f++t
  EHT98752.1 232 FNDTWYLYCGPLVFIAAISALVVFKNAFNQRTLPGLAIISRYSLPIYGFHALFIHFIRT 290
                 6788999999**********99**99999999877666666667799999999999943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2480.97
//
Query:       EHT98753.1  [L=303]
Description: glycine tRNA synthetase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.4e-151  501.3   0.0   7.2e-151  501.1   0.0    1.0  1  tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit


Domain annotation for each model (and alignments):
>> tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.1   0.0    4e-155  7.2e-151       1     277 [.       9     291 ..       9     292 .. 0.98

  Alignments for each domain:
  == domain 1  score: 501.1 bits;  conditional E-value: 4e-155
                   HHHHHHHHHHHHHCTT-EE----SS--SSGGGSHHHHTCCCSSS-EEEEEEEEEE-GGG--TT-STT--SEEEEEEEEEES--TTHHHHHHHHHHHC CS
  tRNA-synt_2e   1 fqelilklqkfwaeqgcvilqpydlevGagtlhpatflralgpepwkvayvepsrRptDgrygenpnrlqkyyqfqvilkPspeniqelylesleal 97 
                   fq lil+lq++wa+qgc+i+qp+d+evGagt hp+t+lralgpep+++ayv+psrRptDgrygenpnrlq+yyqfqvi+kPsp+niqelyl sl+al
    EHT98753.1   9 FQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLKAL 105
                   89*********************************************************************************************** PP

                   T--CCCS-EEEEEEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEEETTEE-SS--EEEEEEHHHHHHHHCT-SSGGG-ECCT....TEEHHHHHHHH CS
  tRNA-synt_2e  98 gidlkehdirfveDdWesptlGawGlGwevwldGmeitqftYfqqvgglelkpvsveityGleRlamylqevdnvydlewne....kvtygdvflqn 190
                   g+d++ hdirfveD+We+ptlGawGlGwevwl+Gme+tqftYfqqvggle+kpv++eityGleRlamy+q+vd+vydl+w++    k+tygdvf+qn
    EHT98753.1 106 GMDPTVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDgplgKTTYGDVFHQN 202
                   *********************************************************************************988888********** PP

                   HHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHH..CCT-HHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  tRNA-synt_2e 191 eveqsaynfeeadvelllklfeeyekeakrll..ekklvlpaydlvlkashtfnlldargaisvterakyiarvrklakkvaeayleqr 277
                   eveqs+ynfe+adv++l+++fe+yekea++ll  ek l+lpay+ +lka+h fnlldar+aisvter++yi r+r+l+k+vaeay+++r
    EHT98753.1 203 EVEQSTYNFEYADVDFLFTCFEQYEKEAQKLLalEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASR 291
                   ******************************9755899************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2334.91
//
Query:       EHT98754.1  [L=689]
Description: glycine tRNA synthetase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.6e-213  709.8   0.0   3.7e-213  709.3   0.0    1.2  1  tRNA_synt_2f  Glycyl-tRNA synthetase beta subunit
    4.8e-08   33.2   1.3    1.2e-07   31.9   1.3    1.7  1  DALR_1        DALR anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA_synt_2f  Glycyl-tRNA synthetase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  709.3   0.0  4.2e-217  3.7e-213       1     534 []       6     551 ..       6     551 .. 0.98

  Alignments for each domain:
  == domain 1  score: 709.3 bits;  conditional E-value: 4.2e-217
  tRNA_synt_2f   1 lLlEigtEElPakalkkaleqlkkllekalkearlsyeevevfatpRRLallveglaekqadkeeekkgppvkvafdadgkptkaaegflrkqgvev 97 
                   +L+EigtEElP+kal++++e+++++++++l++a+l+++ev++fa+pRRLal v +l+++q+d+e+ek+gp+v++afda+g++tkaaeg++r++g++v
    EHT98754.1   6 FLVEIGTEELPPKALRSLAEAFAAQVTAELDAANLNHGEVSWFAAPRRLALKVAHLSASQPDREVEKRGPAVAAAFDAAGNATKAAEGWARGNGITV 102
                   8************************************************************************************************ PP

  tRNA_synt_2f  98 eeleveekkkgeylfakkekkgretaelLaelleelikklpfpksMrWgsselrFvRPvrwlvallgeevvpveiaglksgrttrghrfla.eevei 193
                   +++e+ +++kge+l+++ ++kg+++++lL+ ++ ++++klp+pk MrWg+s+++FvRPv+++++llg+e++p +i+g+ks+r+ rghrf++ +e+++
    EHT98754.1 103 DQAERLSTDKGEWLVYRAQVKGEAAQALLPGMIATALSKLPVPKLMRWGDSDVQFVRPVHTVTMLLGDELIPGTILGIKSDRVIRGHRFMGeSEITL 199
                   ********99********************************************************************************88***** PP

  tRNA_synt_2f 194 ksaddYaekleea.kVivdaeeRkekIleqlealakeagleveedeeLleevtaLvEwPvvllGsfdeefLelPeevlittmkehqkyfpvrdkegk 289
                   ++ad+Y + le++ +Vi+d++ Rk++I++++ea+a++ g+ ++++++Lleevt+LvEwPvvl+++f+e+fL++P+e+l+ tmk +qkyfpv+d+egk
    EHT98754.1 200 ENADQYPDVLEKRgQVIADYQVRKAMIKADAEAAARRLGGVADLSDSLLEEVTSLVEWPVVLTATFEEKFLKVPAEALVYTMKGDQKYFPVYDAEGK 296
                   ************************************99*********************************************************** PP

  tRNA_synt_2f 290 LlpkFivvsnieskdeeaviaGnerVlraRLsDAkFFyeeDlkkplesrvekLkkvvFhekLGslldkverieklaeelaeek....leeaeraaeL 382
                   Llp+Fi+v+nies++++++i+Gne+V+r+RL+DA+FF+++D+kk+le+++++L++v+F+++LGsl dk++ri++la ++a+ +    +++a+ra  L
    EHT98754.1 297 LLPNFIFVTNIESSEPQQIISGNEKVVRPRLADAEFFFNTDRKKRLEDHLPRLETVLFQKELGSLRDKTDRIQALAGWIAA-QtgadVNHATRAGLL 392
                   ********************************************************************************5.423335799****** PP

  tRNA_synt_2f 383 aKaDLvtemVgeFpeLqGimGryYakadgekeeVaeAieehylprgagdelPetkvgavvaladkldtlvglfaigekptGskDPfaLRRaalgvir 479
                   +K+DL+t+mV eF++ qG+mG++Ya++dge+e+Va A++e+y+pr+agd+lP+++v++++a+adk+dtl+g+f+ig++p+G+kDPfaLRRaalgv+r
    EHT98754.1 393 SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSSPVACALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLR 489
                   ************************************************************************************************* PP

  tRNA_synt_2f 480 illekklrldlkellekalealk.......vleelleFfaeRlkvllreegiradlvdavla 534
                   i++ek+l+ldl++l e+a++ +        v++++++F++ R++++++eeg++ d+++avla
    EHT98754.1 490 IIVEKNLPLDLQTLTEEAVRLYGsklsnanVVDDVIDFILGRFRTWYQEEGHSIDTLQAVLA 551
                   *******************9998999999999****************************96 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   1.3   1.3e-11   1.2e-07       4     104 ..     582     679 ..     579     685 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.3e-11
                 HHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHHHHH CS
      DALR_1   4 ahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvkavrq 102
                 a  R+++il k+ e  +++ ++  +l +e+ee++L+  +  + + l+  + e ++++ +  l +L +++ +f++k+ v+ e+ +++  +RL L++ +r+
  EHT98754.1 582 ANKRVSNILAKSTEPLNDSVQAS-LL-KENEEIQLATFVTALSSKLQPYFAEGRYQDALIELAQLREAVDNFFDKVMVNAEDPAVR-INRLTLLSKLRE 677
                 779**********9996665544.44.799*************************************************9999988.********9998 PP

                 HH CS
      DALR_1 103 vL 104
                  +
  EHT98754.1 678 LF 679
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5252.42
//
Query:       EHT98755.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-98  328.9   5.1    5.3e-98  328.0   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    2.9e-16   59.4   0.1    1.3e-15   57.3   0.1    2.3  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    8.1e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.6e-11   44.8   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.016   15.0   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.021   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   13.0   6.9      0.056   12.0   6.9    1.5  1  FUSC             Fusaric acid resistance protein family
       0.03   13.9   2.9      0.039   13.5   0.6    1.9  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.054   12.7   0.5      0.094   11.9   0.5    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.059   13.7   3.0       0.11   12.8   3.0    1.4  1  Troponin         Troponin
        0.1   12.3   2.6       0.33   10.6   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.11   12.5   0.8         12    5.9   0.0    3.0  3  UME              UME (NUC010) domain
       0.14   11.9  10.8       0.26   11.1  10.8    1.3  1  ERM              Ezrin/radixin/moesin family
       0.22   11.9   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.34   11.0  10.9       0.66   10.0  10.9    1.4  1  DHR10            Designed helical repeat protein 10 domain
       0.44   10.6   5.3        3.4    7.8   0.2    2.9  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.7    7.5   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          3    8.2   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        6.8    7.4   8.7        7.7    7.2   1.0    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  328.0   0.1  6.2e-101   5.3e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHT98755.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 328.0 bits;  conditional E-value: 6.2e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98755.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+ri+klyaie+e+r
    EHT98755.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIEKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98755.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98755.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98755.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT98755.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98755.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98755.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98755.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98755.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98755.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?    0.2   0.1      0.54   4.6e+02     125     146 ..     351     384 ..     338     451 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT98755.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.54
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++++l             
    EHT98755.1 351 DVHARTPTDITTEALKRIEKLyaieaeirgspaD 384
                   6778888888888887776664444444444442 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT98755.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT98755.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98755.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT98755.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.9   0.0     0.014        12       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98755.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT98755.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.014
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +e+l 
  EHT98755.1 341 CMAHARRKIHDVHARTPTDITTEALKRIEKLY 372
                 689999***********************986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98755.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT98755.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98755.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98755.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98755.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98755.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT98755.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT98755.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98755.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98755.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1025  (0.0571699); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 3657.13
//
Query:       EHT98756.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98756.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 875.89
//
Query:       EHT98757.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98757.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98757.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98757.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98757.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 890.44
//
Query:       EHT98758.1  [L=203]
Description: putative glutathione S-transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-16   59.8   0.0    4.2e-16   59.1   0.0    1.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.4e-11   43.8   0.0    5.2e-11   42.7   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    4.2e-06   26.9   0.0    6.2e-06   26.3   0.0    1.2  1  GST_C     Glutathione S-transferase, C-terminal domain
      9e-06   25.9   0.0    1.8e-05   25.0   0.0    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain
    0.00081   19.4   0.0     0.0013   18.7   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.2e-19   4.2e-16       1      70 [.       3      73 ..       3      78 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.2e-19
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHH CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLe.ddgealtdSlaIidyLeel 70
                L+g+++Sp++r++ +++ ekg  +e+v+ +p + d +++++nplgkvP+L+  d+++ +dS+ I++yLe +
  EHT98758.1  3 LIGSYTSPFVRKISVIMLEKGMMFEFVNASPYSEDSHVPQYNPLGKVPALVaEDQQVWFDSSIIAEYLELR 73
                899***********************************************978899************976 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.4e-14   5.2e-11       2      68 ..       9      71 ..       8      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.4e-14
                -HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryle 68
                +P+++++ + + +kg+ ++  +v  +  +++  +++p++np+g+VP+L+ +d+qv  +Ss I++yle
  EHT98758.1  9 SPFVRKISVIMLEKGMMFE--FV--NASPYSEDSHVPQYNPLGKVPALVAEDQQVWFDSSIIAEYLE 71
                9******************..55..336788888********************************8 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.7e-09   6.2e-06       3      93 .]      98     193 ..      96     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.7e-09
                 HHHHHHHHHHHSTTH....HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHHHHHHTSH CS
       GST_C   3 dlisqilllfyvkae....ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawlerimarp 93 
                 d is+++l+++ ++     +++ee+++ +++k+ + l+ le+e +  +++   +l lADia  + + +l+ +++++  + + p+l +  e++++r+
  EHT98758.1  98 DGISDAALVIVREQMrsgnAQSEEVLLRHRDKIQRGLDSLEKEVSEGKWIDNGELNLADIATGCMIGYLNFRRVVPNwCVQRPALVRLAETLFQRE 193
                 666777766666666888899999*********************************************************************996 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.1e-09   1.8e-05       9      75 ..       7      71 ..       1      72 [. 0.82

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5.1e-09
                STSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N  9 rgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYia 75
                 +sp++ +i +   +kg+ +e+v+  + ++e  ++   + nplgkvPaL+ +  ++ + S +I+eY++
  EHT98758.1  7 YTSPFVRKISVIMLEKGMMFEFVNASP-YSE--DSHVPQYNPLGKVPALVAEdQQVWFDSSIIAEYLE 71
                56678889999999***********98.444..4777789************566668********95 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.6e-07    0.0013       3      50 ..     122     169 ..      91     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.6e-07
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrlraa 50 
                 ++ r+++++++ ld le++   + ++  +++ laDia  +++++l ++
  EHT98758.1 122 VLLRHRDKIQRGLDSLEKEVSEGKWIDNGELNLADIATGCMIGYLNFR 169
                 5668**************************************999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1793.75
//
Query:       EHT98759.1  [L=307]
Description: formate dehydrogenase formation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-108  362.4   2.4   2.7e-108  362.2   2.4    1.0  1  FdhE            Protein involved in formate dehydrogenase for
  ------ inclusion threshold ------
        1.1    9.3   7.4       0.41   10.6   0.9    2.4  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
        1.1    9.4   4.2        8.7    6.5   2.7    2.2  2  Elf1            Transcription elongation factor Elf1 like
        3.6    7.7   9.1         20    5.3   5.9    2.5  2  DZR             Double zinc ribbon
        4.1    7.7   6.3       0.89    9.8   1.7    2.0  2  Ribosomal_L37e  Ribosomal protein L37e


Domain annotation for each model (and alignments):
>> FdhE  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.2   2.4  7.4e-112  2.7e-108       3     286 .]      22     304 ..      20     304 .. 0.97

  Alignments for each domain:
  == domain 1  score: 362.2 bits;  conditional E-value: 7.4e-112
                 XX--EE---TTHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHCS---...--HHHHHHHHHTT--TT-HHHHHHH-TTHHHHHHHHHT--S-SS CS
        FdhE   3 ipplllpelkelfsrraeRLrqLaeehpladYLrflaalaeaqqkvlaaekpla.ldaeaieraqehgmpplaakalerdeawqelLqallealkeelp 100
                 ippll+p+lk+l+srra+RLr+La+++pl+dYLrf+a +a+aq+ vl  ++pl+ +  +++ r++++   pl+ ++l+rd++w++lL++l+++lk+e++
  EHT98759.1  22 IPPLLFPRLKNLYSRRAARLRDLAAKNPLGDYLRFAAVIAQAQEIVL-YDHPLQmNLHAHLLRSAQEYKAPLDIHTLSRDPHWHRLLHSLVAELKPEMS 119
                 89*********************************************.66665635556677899999999**************************** PP

                 HHHHHHHHHHHH--HHHHHHHHHHHHTT-GGGS-GGGHHHHHHHHHHHHHHHHHT--TTSSS-.-TT-SS-TTT---EEEEEEE-------EEEEEETT CS
        FdhE 101 ealrealerlrkadaeelealadallageleavdaakavfvaaAlqvvwtklaaaldakalaelaeekglCPvCgsaPvasvvriggeaeglRylhCsl 199
                  ++ ++le+l+ka+a+ele+la+al+age+++v+++ka+f++aAl+++w+++aa ++ +a+ae++ ++++CPvC s Pvas+v++g+ +e +RylhC+l
  EHT98759.1 120 GQALAVLENLEKASATELETLASALFAGEYAQVSSDKAPFIWAALSIYWAQMAALIPGTAQAEMGAQRQHCPVCHSLPVASIVHMGS-HESARYLHCNL 217
                 *************************************************************************************99.*********** PP

                 T--EEE--TTS-TTT---SS-EEE------C-EEEEEETTTTEEEEEEETTT-TT--HHHHHHTTHHHHHHHHHTT-EE----TTS. CS
        FdhE 200 CeteWhvvRvkCsnCeetkelaylsledekaavkAesCdeChsYlkilyqekdpevepvADDlAsLaLDllleeegfaraglnplll 286
                 Ce+eWhvv  +Cs+C+ +++l+y+sl++e+aavkAesC++C sY+k+lyqek+p++epvADDlAsL+LD+ +e+egf+r+glnp+++
  EHT98759.1 218 CESEWHVVQNTCSHCDPNRDLHYWSLDSEHAAVKAESCGDCGSYMKMLYQEKNPAIEPVADDLASLVLDARMEQEGFVRSGLNPFMF 304
                 *************************************************************************************97 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9   0.00012      0.41      17      44 ..     186     219 ..     183     221 .. 0.87
   2 ?    1.8   0.8     0.067   2.4e+02      20      43 ..     228     258 ..     222     261 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
  Zn_Tnp_IS1595  17 ngfvCPhCgsrkayrikt......rglfqCkeCr 44 
                    ++++CP C+s  + +i +      +++++C+ C 
     EHT98759.1 186 QRQHCPVCHSLPVASIVHmgshesARYLHCNLCE 219
                    6789*******8888888889999*******996 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.067
  Zn_Tnp_IS1595  20 vCPhCgsr...kayrikt....rglfqCkeC 43 
                    +C hC      +++++ +     +   C +C
     EHT98759.1 228 TCSHCDPNrdlHYWSLDSehaaVKAESCGDC 258
                    6999987667777777666666666666666 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.7    0.0024       8.7      23      57 ..     189     224 ..     179     232 .. 0.78
   2 ?    2.1   0.4     0.056     2e+02      23      60 ..     228     267 ..     225     276 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
        Elf1  23 dCpfCnheksve.vkldkkekiaevsCkvCgesfet 57 
                 +Cp+C++  + + v++   e+  +++C+ C+++ ++
  EHT98759.1 189 HCPVCHSLPVASiVHMGSHESARYLHCNLCESEWHV 224
                 8*****986544278888899999*******98775 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.056
        Elf1  23 dCpfCnheksvev.kldkkekiaev.sCkvCgesfetkvn 60 
                 +C +C+ ++ ++  +ld ++   ++ sC+ Cg+++++  +
  EHT98759.1 228 TCSHCDPNRDLHYwSLDSEHAAVKAeSCGDCGSYMKMLYQ 267
                 577777666665414444444333327*****99987655 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.9    0.0057        20       9      48 ..     184     232 ..     178     233 .. 0.81
   2 ?    2.8   0.1     0.033   1.2e+02      11      23 ..     251     263 ..     245     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0057
         DZR   9 ppdarfCseCgtklkavaa...........edrCpsCgekvdpearfCpeC 48 
                  ++ + C+ C + +   a+             +C  C+++ +  +++C +C
  EHT98759.1 184 GAQRQHCPVCHSLPV--ASivhmgshesarYLHCNLCESEWHVVQNTCSHC 232
                 567789****98754..2234689999999999*****************9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.033
         DZR  11 darfCseCgtklk 23 
                 +a+ C++Cg+ +k
  EHT98759.1 251 KAESCGDCGSYMK 263
                 5778999998765 PP

>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   0.00025      0.89       7      37 ..     204     232 ..     201     237 .. 0.89
   2 ?   -0.9   0.2      0.54   1.9e+03      30      38 ..     251     259 ..     248     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
  Ribosomal_L37e   7 fGkrqkkktHilCrrCgkrsyhvqkktCasc 37 
                     +G + ++  +  C+ C ++ +hv ++tC++c
      EHT98759.1 204 MGSH-ESARYLHCNLCESE-WHVVQNTCSHC 232
                     8999.6679*******876.*********** PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.54
  Ribosomal_L37e  30 qkktCascG 38 
                     + ++C+ cG
      EHT98759.1 251 KAESCGDCG 259
                     678999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2330.72
//
Query:       EHT98760.1  [L=274]
Description: formate dehydrogenase formation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-71  238.6   0.0    8.6e-71  238.4   0.0    1.1  1  FdhD-NarQ  FdhD/NarQ family


Domain annotation for each model (and alignments):
>> FdhD-NarQ  FdhD/NarQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   0.0   4.8e-75   8.6e-71       1     236 [.      38     273 ..      38     274 .] 0.91

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 4.8e-75
                 E--EEEEEEETTEEEEEEEE-SSSHHHHHHHHHHHCTS--SGGGEEEEEEETTTEE....EE-S..........---------------.---...--H CS
   FdhD-NarQ   1 veEepltivvngrelatlmatpadleelalGfllsegliesaediesievdedeas....vavatra.kaedkeerrtakrvvtsgCglcgkesleell 94 
                 +eE+p+++v+ng +++++m+tp+dle++a+Gf+lseg+i+s++di  ++v + ++     +++++r   a +  +rr +  ++++gCg+cg+e+le++ 
  EHT98760.1  38 AEEVPVALVYNGISHVVMMTTPKDLEAFAVGFSLSEGIIDSPADIFGMDVVTGCHGievqIELSSRLfMALKA-QRRAL--AGRTGCGVCGVEQLEQIG 133
                 58*************************************************9988844333344444444433.66666..9****************8 PP

                 -----------EEGGGHHHHHHHHHTS-SHHHHHS--EEEEEEE.TTEEEEEEEESSHHHHHHHHHHHHHT.TSS-SSSEEEESS-B-HHHHHHHHHHT CS
   FdhD-NarQ  95 etlelpesdlklsaeallrlmdalrekqelfketggvHaaalfdadgellavreDvGRHnAlDkviGaallegldlsdkilvvsgRlssemvqKaarag 193
                 + l+++  + ++  ++l +++++l++ q + ++tg++Haaa+++++g l+  +eDvGRH AlDk++G+  +   +  +++++vs+R+s+emvqK+a++g
  EHT98760.1 134 KPLTPLPFTQTFPLAQLDSALAQLKDVQPVGQKTGCTHAAAWIHPEGGLIHGCEDVGRHVALDKLLGYRSQ--AEWGNGAVLVSSRASYEMVQKSAMCG 230
                 8888777789*********************************************************9766..6678********************** PP

                 -SEEEESS-B-HHHHHHHHHHT-EEEEEEETTEEEEEE-GGGE CS
   FdhD-NarQ 194 ipvlvsvsaptslavelAeeagltlvgfvrgkrfnvYtgaeRi 236
                 +++l +vsa+t+lave+Ae+++ltlvgf + +r ++Y++++R+
  EHT98760.1 231 VEILFAVSAATQLAVEVAERCHLTLVGFSKPGRATIYSHPQRL 273
                 ******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2074.94
//
Query:       EHT98761.1  [L=205]
Description: superoxide dismutase, Mn [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-42  141.6   0.7    1.7e-41  140.5   0.3    1.7  2  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    4.4e-35  120.0   1.0    7.7e-35  119.2   1.0    1.4  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3   2.7e+03      44      60 ..      22      38 ..      12      55 .. 0.68
   2 !  140.5   0.3   1.9e-45   1.7e-41       2     102 .]      95     200 ..      94     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.3
                TEEEEEEEETTTBGGGG CS
    Sod_Fe_C 44 kkLeivttknqdnplvk 60
                +++ei +tk++++ + +
  EHT98761.1 22 QTMEIHHTKHHQTYVNN 38
                46677777777665554 PP

  == domain 2  score: 140.5 bits;  conditional E-value: 1.9e-45
                 -HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTEEEEEEEETTTBGGGGTTC......EEEEEE-SGGGTHHHHTT-HHHHHHHHGGGB CS
    Sod_Fe_C   2 sgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkkkkLeivttknqdnplvkeak......plLalDvwehAYyldyqnkradYieafwnvv 94 
                 +gel++aie+dfgs+ekf++ef++aa+++fgsGwawLv++ + kL++v+t+nqdnpl+ ea       p+++lDvwehAYyl+yqnkr+dYi+afwnvv
  EHT98761.1  95 QGELKAAIEKDFGSVEKFQEEFEKAAATRFGSGWAWLVKKGD-KLAVVSTANQDNPLMGEAIagvsgyPIIGLDVWEHAYYLKYQNKRPDYIKAFWNVV 192
                 689************************************987.***************877789999******************************** PP

                 BHHHHHHH CS
    Sod_Fe_C  95 nWkeveer 102
                 nW+e+++r
  EHT98761.1 193 NWDEAAAR 200
                 ***99876 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   1.0   8.6e-39   7.7e-35       1      81 [.       2      88 ..       2      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 8.6e-39
                S------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHH......HHHHHHHHHHHHHHHHHHHHHTB CS
    Sod_Fe_N  1 kyeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlk......klekalrnnagghvnHslfwknl 81
                +y+Lp+LpYaydaLePh++k+t+e+Hh+kHh+tYvnn+N+ale++e+a+ +++el++k      ++++ lrnnaggh+nHslfwk l
  EHT98761.1  2 SYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALEGTEFADLPVDELITKldqlpaDKKGPLRNNAGGHANHSLFWKGL 88
                59******************************************************99*****9999*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1514.26
//
Query:       EHT98762.1  [L=320]
Description: virulence protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-93  312.0   0.3    3.9e-93  311.8   0.3    1.0  1  DUF535    Protein of unknown function (DUF535)


Domain annotation for each model (and alignments):
>> DUF535  Protein of unknown function (DUF535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.8   0.3   2.2e-97   3.9e-93       2     280 ..      31     307 ..      30     308 .. 0.98

  Alignments for each domain:
  == domain 1  score: 311.8 bits;  conditional E-value: 2.2e-97
      DUF535   2 kwkelrrrlkfllrsllhprqtkkllqflnqspllkellkkqprllekllrpYlsknlsakqrleaivdhytfleelltaellqellekkgltlaeleg 100
                  w+++ +rlkf+lr+l+ p +t ++lq+l++ p +++l++ q  l+ kl+rpYl +++s++qr++ai dhy+++ +l +++l+q l + ++  la++eg
  EHT98762.1  31 LWRSRLFRLKFALRTLIAPVTTLRYLQQLSALPGITQLMHVQGLLPAKLHRPYLRAGMSVAQRAQAILDHYALMGSLENSQLRQILQSGEETVLARFEG 129
                 699****************************************************************************99999999999********* PP

      DUF535 101 keeeeleleLsinagqrkEGelsLelrdedkqllysltFtllkregektllIGalQGpkkenakelikqlTKachGlrPkrLllealkllaealgveqi 199
                 k++e +++++  +  +++EGe++++lr+e+ + l+sl+Ft++++e+++tllIG+lQGp+k+ ++++i+++TKa +Gl+PkrLl+e++ +la+++gv++i
  EHT98762.1 130 KNNEAFNITC-RSGYFDREGEVTVVLRYEN-EALASLSFTIMNDEKQRTLLIGGLQGPRKHISNDVIRDATKAAYGLFPKRLLMEVVFILAQQCGVKKI 226
                 **********.599**************77.77****************************************************************** PP

      DUF535 200 lavsnkghvyrqlryrlkkkkklvadYdefWeelgGeakdkeyyeLPleeerkdleeiaskKRseYrkRyalldeleeqia 280
                  av +++hv+r+lryr++k +k++a+Y+efW +l+G+a+++++++LPl  +rk+le+iaskKR+eYr+Ry lld+l+eq++
  EHT98762.1 227 AAVGDETHVFRSLRYRHSKGDKFFASYSEFWLTLNGQARADGMFALPLMLPRKTLEDIASKKRAEYRRRYTLLDTLAEQVN 307
                 ******************************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2527.42
//
Query:       EHT98763.1  [L=120]
Description: uncharacterized DUF2810 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-32  109.8   0.5      8e-32  109.0   0.5    1.4  1  DUF2810         Protein of unknown function (DUF2810)
    2.2e-05   25.0   8.5    2.8e-05   24.6   8.5    1.2  1  FlgN            FlgN protein
  ------ inclusion threshold ------
      0.071   13.3   1.1      0.071   13.3   1.1    3.2  3  HALZ            Homeobox associated leucine zipper
       0.58    9.0   9.3       0.36    9.7   4.5    1.9  2  Spc7            Spc7 kinetochore protein
       0.91    8.1   4.8       0.96    8.0   4.8    1.1  1  FapA            Flagellar Assembly Protein A
       0.95   10.1  10.7       0.23   12.1   5.4    2.0  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
          1    9.5   7.0       0.64   10.1   0.9    2.6  3  DUF1192         Protein of unknown function (DUF1192)
        4.9    7.5   9.3        6.4    7.2   9.3    1.2  1  YlqD            YlqD protein
        7.1    7.1  10.4         10    6.7   2.1    2.4  2  Fungal_TACC     Fungal Transforming acidic coiled-coil (TACC)


Domain annotation for each model (and alignments):
>> DUF2810  Protein of unknown function (DUF2810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.5     4e-35     8e-32       1      52 [.      66     117 ..      66     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 4e-35
     DUF2810   1 klqelpFkRaltKaEqAdmGkLKksVrGLvvVHPmTalGrelglkevTGyAp 52 
                 klq+lpF+R++tK+EqA++G+LKksVrGLvvVHPmTalGre+ l+++TG+A+
  EHT98763.1  66 KLQKLPFSREITKKEQANLGALKKSVRGLVVVHPMTALGREMNLQVMTGFAK 117
                 699************************************************8 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   8.5   1.4e-08   2.8e-05      16      89 ..      11      84 ..       3      96 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCTTCCHHH CS
        FlgN 16 elleeLlelleeEteaLkagdieaLeelleekqellekleqleqkrakllaelglsaeeatlsellakeedeel 89
                 l ++L +l ++E ++L agd+e+L +ll+ek++l+ ++e+l ++r++ l++ +++ +++  s+ + k+e++ l
  EHT98763.1 11 RLSDQLDALNRKEPQLLEAGDAEKLGALLKEKETLVTEIERLRNQRDAKLSQEAQKLQKLPFSREITKKEQANL 84
                5667899999****************************************999998333333333333444444 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.5      0.24   4.8e+02      26      41 ..       7      22 ..       3      24 .. 0.74
   2 ?   13.3   1.1   3.6e-05     0.071      23      41 ..      37      55 ..      33      57 .. 0.90
   3 ?   -0.6   0.7      0.82   1.6e+03      24      33 ..      60      69 ..      58      70 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.24
        HALZ 26 kenekLkaelqeLkek 41
                +e ++L  +l  L+ k
  EHT98763.1  7 NEIKRLSDQLDALNRK 22
                5667888888888776 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.6e-05
        HALZ 23 sLkkenekLkaelqeLkek 41
                +L+ke+e+L +e+++L+++
  EHT98763.1 37 ALLKEKETLVTEIERLRNQ 55
                89***************97 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.82
        HALZ 24 LkkenekLka 33
                L +e +kL++
  EHT98763.1 60 LSQEAQKLQK 69
                5566666664 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.04        80     261     281 ..       2      22 ..       1      24 [. 0.83
   2 ?    9.7   4.5   0.00018      0.36     156     209 ..      37      92 ..      27      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.04
        Spc7 261 kgwsesevsrlkeevkaleel 281
                 k+ +++e++rl ++++al ++
  EHT98763.1   2 KEQEKNEIKRLSDQLDALNRK 22 
                 567899999999999999875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqe..aaeelesidkeeLeelreela 209
                 +lL+++e +++e+    +++ a+l++e++klq+  +++e+++ ++++L +l+++++
  EHT98763.1  37 ALLKEKETLVTEIERLRNQRDAKLSQEAQKLQKlpFSREITKKEQANLGALKKSVR 92 
                 679999999999999999999************999****************9876 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.8   0.00048      0.96     348     411 ..       4      67 ..       1      98 [. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00048
        FapA 348 eleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk.elkeelesk 411
                 + ++e+++l ++++ l+  k+++ le+   e+l  ll++ke l++e+e l+++++ +l++e ++ 
  EHT98763.1   4 QEKNEIKRLSDQLDALNR-KEPQLLEAGDAEKLGALLKEKETLVTEIERLRNQRDaKLSQEAQKL 67 
                 557888888888999998.88899999999********************999999999999988 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.25   5.1e+02      27      40 ..       7      20 ..       1      38 [. 0.49
   2 ?   12.1   5.4   0.00012      0.23      25      74 ..      38      90 ..      32     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.25
  HIP1_clath_bdg 27 rekkeleeelerlk 40
                    +e k+l+++l++l+
      EHT98763.1  7 NEIKRLSDQLDALN 20
                    22222333333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
  HIP1_clath_bdg 25 verekkeleeelerlkeeaerkleeqkeelekL..kreleakr.aelarlkss 74
                    + +ek++l +e+erl+++++ kl++ +++l+kL   re+++k+ a+l  lk+s
      EHT98763.1 38 LLKEKETLVTEIERLRNQRDAKLSQEAQKLQKLpfSREITKKEqANLGALKKS 90
                    6789********************99999999844567665531456666665 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.07   1.4e+02      33      45 ..       6      18 ..       3      26 .. 0.83
   2 ?   10.1   0.9   0.00032      0.64      31      51 ..      44      64 ..      38      65 .. 0.88
   3 ?   -2.9   0.1       3.8   7.5e+03      42      49 ..      75      82 ..      73      86 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.07
     DUF1192 33 eaEIaRleaaiak 45
                + EI+Rl++++++
  EHT98763.1  6 KNEIKRLSDQLDA 18
                68*****999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00032
     DUF1192 31 lLeaEIaRleaaiakkkasra 51
                +L  EI+Rl++++++k +++a
  EHT98763.1 44 TLVTEIERLRNQRDAKLSQEA 64
                6889************98865 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.8
     DUF1192 42 aiakkkas 49
                +i+kk++ 
  EHT98763.1 75 EITKKEQA 82
                56666655 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.3    0.0032       6.4      22      99 ..       2      80 ..       1      89 [. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0032
        YlqD 22 qqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserl.ekkkqllqqleqvqkLelgsevkqgq 99
                ++q +++i++l  +l+ L+ ++ +l++    ++  +  + +e +  e+++++ ++ ++l q+ +++qkL+   e+ +++
  EHT98763.1  2 KEQEKNEIKRLSDQLDALNRKEPQLLEAGDAEKLGALLKEKETLVTEIERLRnQRDAKLSQEAQKLQKLPFSREITKKE 80
                6788999******************99999988887666666666666665505557899999***********99886 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.9    0.0088        17      47      73 ..       2      28 ..       1      32 [. 0.85
   2 ?    6.7   2.1    0.0051        10      38      72 ..      33      68 ..      28      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0088
  Fungal_TACC 47 nkslkqeieqLkkqleaerkEKqeLlk 73
                 +++ k+ei++L++ql+a ++   +Ll+
   EHT98763.1  2 KEQEKNEIKRLSDQLDALNRKEPQLLE 28
                 57889***********99888888886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0051
  Fungal_TACC 38 kkldklelenkslkqeieqLkkqleae.rkEKqeLl 72
                 +kl  l +e+++l +eie+L++q +a+  +E q+L 
   EHT98763.1 33 EKLGALLKEKETLVTEIERLRNQRDAKlSQEAQKLQ 68
                 67888999*************998876245666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 860.32
//
Query:       EHT98764.1  [L=200]
Description: DNA-binding repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-59  201.0   0.0    1.4e-59  200.8   0.0    1.1  1  MtlR      Mannitol repressor


Domain annotation for each model (and alignments):
>> MtlR  Mannitol repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   0.0   7.9e-64   1.4e-59       2     164 ..      31     189 ..      30     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 200.8 bits;  conditional E-value: 7.9e-64
        MtlR   2 edevlEkLneqenvrsflaaavkileeavdqLiervFrkddfavkyvvepLleksGPLadlsvrlkllyaLGviskevyeDielfiqlkeelnedekey 100
                 e++vlE+Ln+ ++vrsfl aav++l+eav+ L+ +vFrkdd+avky+vepLl  +GPL++lsvrlkl+y+LGvis+++yeD el++ l+eeln+d  +y
  EHT98764.1  31 ENRVLERLNAGRSVRSFLFAAVELLAEAVNVLVLQVFRKDDYAVKYAVEPLLLGDGPLGELSVRLKLIYGLGVISRHEYEDCELLLTLREELNHDAGDY 129
                 89************************************************************************************************* PP

        MtlR 101 eFsddeildfikelhlvsekslleleeekeeeddsllyqlqqqryeqlirsaLiLavtelleel 164
                 +F+ddeild++ elh+vs+ +++++     ++dd  l+++qqqry q++rs+++L++tel++++
  EHT98764.1 130 RFTDDEILDPFGELHCVSAWPPVPTL----QADDPALQAMQQQRYLQMVRSTMVLSLTELISRI 189
                 *******************9988877....56799**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1432.06
//
Query:       EHT98765.1  [L=382]
Description: NAD(P)-binding mannitol-1-phosphate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-69  234.1   0.0    2.5e-69  233.5   0.0    1.3  1  Mannitol_dh_C    Mannitol dehydrogenase C-terminal domain
    2.6e-26   92.6   0.1    5.3e-26   91.6   0.1    1.5  1  Mannitol_dh      Mannitol dehydrogenase Rossmann domain
  ------ inclusion threshold ------
      0.024   14.5   0.2       0.13   12.2   0.1    2.1  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.065   13.2   0.5        1.5    8.8   0.1    2.7  3  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
       0.11   12.7   0.2       0.29   11.4   0.2    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.5   0.0   6.9e-73   2.5e-69       2     245 ..     149     373 ..     148     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 233.5 bits;  conditional E-value: 6.9e-73
  Mannitol_dh_C   2 svgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGyq 97 
                    +vgf++++VDRIvp            e g eDpl+vtvE+F++W+++++++kg +   + g+el++++++++erKl++LN+gHa++aylg  aG+q
     EHT98765.1 149 HVGFVDSAVDRIVPP----------SEAGSEDPLEVTVETFSEWIVDKTQFKG-DLPTIPGMELTDNLMAFVERKLFTLNTGHAITAYLGQRAGHQ 233
                    89************7..........489*************************.99**************************************** PP

  Mannitol_dh_C  98 tiheamkdeeiraivkkllteevapllkkv..deqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalw 191
                    ti++a+ de ira+v+++++e+ a+l+k++  d++++++Y++ki++RF+Npy+kd+verv+++     p r+l++ +rlik  +   +l++g + +
     EHT98765.1 234 TIRDAILDEGIRAVVQGAMEESGAVLIKRYgfDADKHAAYIQKILGRFENPYLKDDVERVGRQ-----PLRKLSAGDRLIK--PTLGTLEYG-LPH 321
                    ***************************************************************.....*************..*********.*** PP

  Mannitol_dh_C 192 irylegvaeggnyiekeDpqleelqeaallakervkavlaekeileedlaqnke 245
                     ++++g+a +++y++ +Dpq++el++  lla+++++a la++++le+d++ +ke
     EHT98765.1 322 ANLVKGIATAMHYHSDQDPQAQELAA--LLAEKGPQATLAQVSGLEADSEIVKE 373
                    **************************..********************998876 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.1   1.5e-29   5.3e-26       1     151 []       1     123 [.       1     123 [. 0.95

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1.5e-29
                  EEEEEES-SHHHHHTHHHHHHHHTT--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-HHHHHHHHTSTT--EEEE CS
  Mannitol_dh   1 erivhfGaGnfhRahqayiddLlaeegldwgivevnlrevdareaLkaqdelyvviekgeeskearlvgsvnavlsveedlealieamaePeirivsl 98 
                  ++++hfGaGn++R+   +i++Lla+ g+++ +++vn+++ da   L+a++e+ v+++   e+ ++++v+ v+av+s ++d   +i ++ae  +++v++
   EHT98765.1   1 MKALHFGAGNIGRG---FIGKLLADAGIELVFADVNQTVLDA---LNARHEYPVHVVG--EQANVDIVTGVSAVNSTSDD---IIPLIAE--VDLVTT 85 
                  799***********...*************************...*************..9***************9976...*******..****** PP

                  ---TTTBETTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHTT----EEEE-SS- CS
  Mannitol_dh  99 tvtekGidatgeletdlpaiaadlakpellvealkrrraaglkpltiisCdnv 151
                  +v++          + l++ia+++ak+       kr  + +++pl+ii+C+n+
   EHT98765.1  86 AVGP----------QILERIATSVAKG-----LAKRSDNGNVQPLNIIACENM 123
                  ****..........*************.....3555667789**********8 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.6e-05      0.13       5      86 ..       6      87 ..       3      91 .. 0.78
   2 ?    0.4   0.0      0.14   5.2e+02      23      77 ..      80     134 ..      73     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
                E--SCCHHH.HHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S CS
     3HCDH_N  5 iGaGtmGag.iaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEav 86
                 GaG +G+g i +++a ag+e v  d+++  l++ +++ e  ++ + e+ +++   v  + a  s+++d+  ++ ++dlv  av
  EHT98765.1  6 FGAGNIGRGfIGKLLADAGIELVFADVNQTVLDALNARHEYPVHVVGEQANVD--IVTGVSAVNSTSDDIIPLIaEVDLVTTAV 87
                59******97789********************99999998777776666655..55555555557777777666777777665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                 -EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH CS
     3HCDH_N  23 leVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav 77 
                 ++ v + + +++le+ + +++k l+k   +g+++  ++ a+ + ++ t++l++ v
  EHT98765.1  80 VDLVTTAVGPQILERIATSVAKGLAKRSDNGNVQPLNIIACENMVRGTSQLKQHV 134
                 5566677789999********************9999999999999999888765 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00042       1.5       5      93 ..       6     103 ..       2     121 .. 0.66
   2 ?   -1.8   0.0      0.75   2.7e+03      44      79 ..     111     140 ..     104     153 .. 0.58
   3 ?    1.2   0.0     0.091   3.3e+02      93     146 ..     315     377 ..     304     381 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00042
                     E--SHHHHH.HHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT....----TTEEEES....-HHHHHTT--EEEE---HHHHHHHHHHHC CS
  NAD_Gly3P_dh_N   5 lGaGswGta.lAkvlaenghevrlwvreeelieeineehenvkyLpg....iklpenlvatt....dlaealkgadiivlvvPsqalrevlkklk 90 
                     +GaG+ G   + k+la++g e +    ++ +++++n++he    + g    +++ + + a++    d+   ++++d++  +v  q+l++++++++
      EHT98765.1   6 FGAGNIGRGfIGKLLADAGIELVFADVNQTVLDALNARHEYPVHVVGeqanVDIVTGVSAVNstsdDIIPLIAEVDLVTTAVGPQILERIATSVA 100
                     7******9658*****************************9877765111133333333322111144444555555555555555555555555 PP

                     CC- CS
  NAD_Gly3P_dh_N  91 gll 93 
                     + l
      EHT98765.1 101 KGL 103
                     444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.75
                     BTTTBTT----TTEEEES-HHHHHTT--EEEE---H CS
  NAD_Gly3P_dh_N  44 nvkyLpgiklpenlvattdlaealkgadiivlvvPs 79 
                     nv+ L+ i++++ ++ t++l++       ++ ++Ps
      EHT98765.1 111 NVQPLNIIACENMVRGTSQLKQ------HVLQALPS 140
                     4444555555555555544444......44445555 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.091
                     --TT-EEEE---SE.........ET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT--EE CS
  NAD_Gly3P_dh_N  93 lkkkailvsliKGi.........eegtlkllsevieeelkeekvavlsGpslAeEvakgkpta 146
                     l+   + ++l+KGi         ++ + + l   ++e+ +++++a +sG    +E++k+ ++a
      EHT98765.1 315 LEYGLPHANLVKGIatamhyhsdQDPQAQELAALLAEKGPQATLAQVSGLEADSEIVKEAVSA 377
                     555666778899997666665544467777888888888888899999999999999988776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   8.1e-05      0.29       3      73 ..       5      83 ..       3     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
                     EE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..........TTTCEEEEE--TTTHHHHHHHHHTTSSEE CS
  Sacchrp_dh_NADP  3 iiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka..........lgvrfeaialdaenyeavLaallkegdlv 73
                      +GaG++G++++ +l++   +  e++ ad +++ l+al a            ++v++ +    ++  ++ + +l++e dlv
       EHT98765.1  5 HFGAGNIGRGFIGKLLADAGI--ELVFADVNQTVLDALNARHeypvhvvgeqANVDIVTGVSAVNSTSDDIIPLIAEVDLV 83
                     58*******************..9**********99998776766666665544444444444444444466666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3064.40
//
Query:       EHT98766.1  [L=644]
Description: PTS system mannitol-specific EIIABC component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-32  111.9   0.0      4e-32  111.1   0.0    1.4  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf
    6.3e-18   64.9  35.6    6.3e-18   64.9  35.6    3.0  2  PTS_EIIC    Phosphotransferase system, EIIC
    8.7e-10   39.2   0.0      2e-09   38.0   0.0    1.6  1  PTS_IIB     PTS system, Lactose/Cellobiose specific IIB subun


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   6.8e-36     4e-32       6     142 ..     503     638 ..     499     640 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 6.8e-36
                 CGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC...BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE- CS
  PTS_EIIA_2   6 elifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea...vkkpaiavlklkepvdfeasdgkpvklifllal 101
                  ++fl l+a++ke+ai++++++l++ g+v+p+  y++a+lerek+ +t++g+ +A+PH+++ea   v+k+++++++ + +v+f+++ ++ ++l++ +a+
  EHT98766.1 503 SNVFLGLNASNKEQAIRFAGEQLVKGGYVQPE--YVDAMLEREKLTPTYLGESIAVPHGTVEAkdrVLKTGVVFCQYPAGVQFGDEPDEVARLVIGIAA 599
                 689*****************************..**************************887789******************666888999999999 PP

                 SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHC CS
  PTS_EIIA_2 102 pekdaehlkilaqLaellkdeefvekLrkakseeeilelle 142
                  +++  h++++ +L++ l+de+++ekL+ ++s +++l+ll+
  EHT98766.1 600 RNNE--HIQVITSLTNALDDEQVIEKLAHTNSVQDVLDLLS 638
                 9998..********************************996 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9  35.6   1.1e-21   6.3e-18       1     324 []      17     277 ..      17     277 .. 0.86
   2 ?   -1.2   0.2      0.13     8e+02     195     207 ..     314     325 ..     278     350 .. 0.46

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.1e-21
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 s+++m+ i ++ia+Gi+++l++                t++ ++a++ k +  ++ ++Lpll++++ +  +  ++ gv+g+  ++g+++          
  EHT98766.1  17 SNMVMPNIGAFIAWGIITALFI---------------PTGWIPNATLAKLVAPMITYLLPLLIGFTGGRLVGGDRGGVVGAITTMGVIV---------- 90 
                 689*******************...............456667889***********************99657777776666666666.......... PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffv...gkrfvpiittlvvllvvglvllliwpaiqgglnalg... 192
                                  ++++ +++g++i+g l +++++ f++++  k+ ++++++v   +  ++ ++ +l+++l++g+++  ++ +++ g+n+ +   
  EHT98766.1  91 -----------------GADMPMFLGSMIAGPLGGWAIKSFDRMVDGKIKSGFEMLVnnfSAGIIGMLLALLAFLAIGPLVEGLSHILSAGVNLMVqnn 172
                 .................7899************************************444555555555566666677777777777777777766775 PP

    PTS_EIIC 193 ll....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkl 287
                 ll    ++ ++  + +l  ++ ++++ p+G+++a+ a+  +++                              + ++pg++ ++++a++++ +   k++
  EHT98766.1 173 LLpltsVFVEPAKILFLNNAINHGIFSPLGIQQASEAGKSIFF-----------------------------LIEANPGPGMGVLMAYMFFGRGSAKQS 242
                 3377888999999****************************88.............................4779*********************** PP

    PTS_EIIC 288 lgsaaltpflfGItepleFgfpfvlnll.lfipallag 324
                 +g+aa+++fl+GI+e++   fp+vl+++ l+++++l+g
  EHT98766.1 243 AGGAAIIHFLGGIHEIY---FPYVLMAPpLLLAVILGG 277
                 *****************...*****9998888888876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.13
    PTS_EIIC 195 lggsgsllgvlif 207
                   ++   ++++ +
  EHT98766.1 314 ANIAA-VFAAFAV 325
                 11111.2222222 PP

>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   3.3e-13     2e-09       1      80 [.     383     458 ..     383     467 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.3e-13
                 EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHC CS
     PTS_IIB   1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalg 80 
                 ki++aC aGm++S+m a  l+k ++++g+  ++++++    ++ + d+Dlv+++ +++    a  ++ +++ i+++++l+
  EHT98766.1 383 KIIVACDAGMGSSAMGAGVLRKKVQDAGLTHVSVTNS--AINALPGDVDLVITHRDLTE--RAIRQAPHAQHISLNNFLD 458
                 8***************************888888888..899999*************4..3333333599999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4439.10
//
Query:       EHT98767.1  [L=238]
Description: uncharacterized DUF3053 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-88  296.5   8.3    1.3e-88  296.3   8.3    1.0  1  DUF3053       Protein of unknown function (DUF3053)
  ------ inclusion threshold ------
       0.32   10.8   3.2        2.3    8.1   0.7    2.6  2  Dynactin_p22  Dynactin subunit p22


Domain annotation for each model (and alignments):
>> DUF3053  Protein of unknown function (DUF3053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.3   8.3   1.4e-92   1.3e-88       4     219 ..      19     233 ..      15     234 .. 0.99

  Alignments for each domain:
  == domain 1  score: 296.3 bits;  conditional E-value: 1.4e-92
     DUF3053   4 llvvlqLagCgdkepeqRkAFidfLqntvlrspgvavptLteaqkkafGdYasdYailtafsqqlnqavetslepvvdalqsirspqdyltrrdelrqa 102
                 +l+vlqL++Cgdke eqRkAFidf+qntv+rs g+++p+L+e+qk++fG++a dYail++fsqq+n+ v+++++pvvd+l++ir+pqdyl+rrd+l+qa
  EHT98767.1  19 VLIVLQLTACGDKEGEQRKAFIDFMQNTVMRS-GEHLPSLSENQKQSFGPFAGDYAILYGFSQQVNKTVDQGMRPVVDELSAIRVPQDYLSRRDSLAQA 116
                 6899****************************.****************************************************************** PP

     DUF3053 103 agalneleqqlqnakaqadkaraaLkqpddlkavydkayektVtqpanaltpllplaeallqqlvqvgdflqkqgnqvefegngvqfktqqqadqyNel 201
                  +al +++qql++ak+qadk++a+Lkq+ddlk+v+d ay+k+Vtqpa++l pllp ++al q++v++g+flq+qg++v+f+++gvqf+tq+qa+qyN+l
  EHT98767.1 117 TSALTVATQQLESAKMQADKSKAGLKQSDDLKKVFDTAYDKVVTQPAAQLIPLLPKLQALSQDAVKTGEFLQAQGTRVSFNNGGVQFPTQEQATQYNSL 215
                 *************************************************************************************************** PP

     DUF3053 202 lsaLneqqqellqaqksl 219
                 ++ L+++ q+l+qa++ +
  EHT98767.1 216 MTSLSANVQALTQAKNAV 233
                 **************9977 PP

>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.7   0.00025       2.3      28      78 ..     114     163 ..      90     182 .. 0.79
   2 ?    3.6   1.0    0.0061        54     118     161 ..     168     222 ..     141     228 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00025
  Dynactin_p22  28 esiidsLakvqkklssavskrekikellkkleelekyLdpeyedseelpde 78 
                    + ++ L+ + ++l+sa  + +k k+ lk+ ++l+k  d +y +  + p +
    EHT98767.1 114 AQATSALTVATQQLESAKMQADKSKAGLKQSDDLKKVFDTAYDKVVTQP-A 163
                   6778889999999**************************9998887444.3 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0061
  Dynactin_p22 118 elkekLekLsqihlkqqeeveelseev...........kkllekYnklvltlskq 161
                    l +kL+ Lsq  +k+ e ++++ ++v           ++   +Yn+l+++ls +
    EHT98767.1 168 PLLPKLQALSQDAVKTGEFLQAQGTRVsfnnggvqfptQEQATQYNSLMTSLSAN 222
                   3556777777777777777776666552222222222246667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1845.60
//
Query:       EHT98768.1  [L=97]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   28.1   0.0    2.4e-06   27.5   0.0    1.3  1  HTH_3            Helix-turn-helix
    8.4e-06   26.0   0.0    1.3e-05   25.5   0.0    1.2  1  HTH_31           Helix-turn-helix domain
     0.0008   19.5   0.0     0.0009   19.4   0.0    1.1  1  MqsA_antitoxin   Antitoxin component of bacterial toxin-antit
    0.00088   18.9   0.0     0.0019   17.9   0.0    1.5  1  Sigma70_r4_2     Sigma-70, region 4
      0.002   18.1   0.0     0.0021   17.9   0.0    1.2  1  Sigma70_ECF      ECF sigma factor
      0.005   16.8   0.0     0.0092   16.0   0.0    1.4  1  HTH_19           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.059   13.1   0.0      0.068   12.9   0.0    1.2  1  DUF4447          Domain of unknown function (DUF4447)
      0.092   12.8   0.0       0.13   12.3   0.0    1.2  1  DUF1870          Domain of unknown function (DUF1870)
       0.11   12.3   0.0       0.18   11.7   0.0    1.3  1  HTH_23           Homeodomain-like domain
       0.11   12.6   0.0       0.16   12.1   0.0    1.4  1  HTH_28           Helix-turn-helix domain
       0.12   12.5   0.0       0.17   11.9   0.0    1.3  1  Phage_terminase  Phage terminase small subunit
       0.16   12.1   0.0       0.27   11.4   0.0    1.4  1  MerR_1           MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.6e-09   2.4e-06       3      38 ..      41      76 ..      40      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.6e-09
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBH CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGernPsl 38
                +lR+ +g++  e+A+ +Gvs+s++  +E  +++Ps 
  EHT98768.1 41 RLREMAGMQVDEFAKIMGVSVSSVKSWEAQRTRPSA 76
                69****************************999986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.5e-09   1.3e-05       6      46 ..      39      78 ..      37      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8.5e-09
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspav 46
                 ++lRe aG+  +e A+  gvs+s +  +E  r  rps  +
  EHT98768.1 39 PQRLREMAGMQVDEFAKIMGVSVSSVKSWEAQRT-RPSATA 78
                689*******************************.897653 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     6e-07    0.0009      75     126 ..      40      91 ..      15      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6e-07
  MqsA_antitoxin  75 arvrkkleldqreaaeifGgGvnafsryekGkvrpplalvkllklldrhPel 126
                     +r+r+  +++  e a+i+G+ v +   +e+ ++rp+++  kl+kll+  P l
      EHT98768.1  40 QRLREMAGMQVDEFAKIMGVSVSSVKSWEAQRTRPSATAQKLMKLLHANPYL 91 
                     588999999*************************************999976 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0019      21      46 ..      42      67 ..      37      68 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                  HHHTS---HHHHHHHHT--HHHHHHH CS
  Sigma70_r4_2 21 lryleglsykEIAellgisegtVksr 46
                  lr++ g+  +E A+++g+s+++Vks+
    EHT98768.1 42 LREMAGMQVDEFAKIMGVSVSSVKSW 67
                  89999*******************97 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-06    0.0021     143     178 ..      39      73 ..       5      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
  Sigma70_ECF 143 lvelrkleGlsveEiAeklgvskrtverrlalaRaw 178
                     lr ++G+ v+E A+ +gvs ++v+  ++  R++
   EHT98768.1  39 PQRLREMAGMQVDEFAKIMGVSVSSVK-SWEAQRTR 73 
                  55799********************95.79988876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-06    0.0092       6      49 ..      41      85 ..      40      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.1e-06
      HTH_19  6 eaReelgltqeelaerlgisrskisaiEngkkdvps..aelllkia 49
                ++Re++g+  +e a+  g+s s+   +E  ++  ps  a +l k++
  EHT98768.1 41 RLREMAGMQVDEFAKIMGVSVSSVKSWEAQRT-RPSatAQKLMKLL 85
                89***************************999.9986666666665 PP

>> DUF4447  Domain of unknown function (DUF4447)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.068      12      65 ..      39      94 ..      29      97 .] 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
                HHHHHHHTT--HHHHHHHHTS-HHHHHHHHTTSS---HHHHH..HHHHHHHHHHHH CS
     DUF4447 12 ikylrqslglsaaqvgeltkaseedvlaweageaeapelaqk..klleideiiemq 65
                 + lr+  g++ ++ +++ + s + v +wea  ++ +  aqk  kll+ +  +  q
  EHT98768.1 39 PQRLREMAGMQVDEFAKIMGVSVSSVKSWEAQRTRPSATAQKlmKLLHANPYLGRQ 94
                578999*****************************999999866677766655555 PP

>> DUF1870  Domain of unknown function (DUF1870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.6e-05      0.13       7      46 ..      40      77 ..      36      90 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.6e-05
                HHHHHHTT--HHHHHHHTSSS--HHHHHHHHTTSS---HH CS
     DUF1870  7 qAlRkilaltveeaaeyigkavdsatWknWesgalpipde 46
                q lR++ +++v+e a+ +g +   ++ k+We+  +  + +
  EHT98768.1 40 QRLREMAGMQVDEFAKIMGVS--VSSVKSWEAQRTRPSAT 77
                89*************999866..66789999877653333 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.18      14      39 ..      42      69 ..      40      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      HTH_23 14 lae..GlsvreIAreLgvsrrTvyrwlk 39
                l+e  G+ v e A+++gvs + v  w  
  EHT98768.1 42 LREmaGMQVDEFAKIMGVSVSSVKSWEA 69
                556669*******************965 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.16      11      34 ..      46      69 ..      40      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      HTH_28 11 aGhsvreaArelgisrrtvyrWik 34
                aG+ v+e A+++g+s ++v++W  
  EHT98768.1 46 AGMQVDEFAKIMGVSVSSVKSWEA 69
                68899*****************75 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.17      23      45 ..      48      70 ..      29      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
  Phage_terminase 23 lklkdIAkvLdvsestvrkWKak 45
                     +++ + Ak+++vs s v+ W a+
       EHT98768.1 48 MQVDEFAKIMGVSVSSVKSWEAQ 70
                     678899**************997 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.27       1      22 [.      48      69 ..      48      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
                EEHHHHHHHHTS-HHHHHHHHH CS
      MerR_1  1 ysigevakilgvtthtlrywek 22
                + ++e+aki gv+++ ++ we 
  EHT98768.1 48 MQVDEFAKIMGVSVSSVKSWEA 69
                6799****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 798.00
//
Query:       EHT98769.1  [L=415]
Description: tryptophan transporter of low affinity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-138  461.7  32.4   2.4e-138  461.5  32.4    1.0  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
  ------ inclusion threshold ------
       0.51   10.1   3.8        1.7    8.5   3.8    1.8  1  DUF5373       Family of unknown function (DUF5373)


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.5  32.4  2.6e-142  2.4e-138       2     394 .]       8     403 ..       7     403 .. 0.98

  Alignments for each domain:
  == domain 1  score: 461.5 bits;  conditional E-value: 2.6e-142
  Trp_Tyr_perm   2 tksllggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAy 98 
                   ++s+++gv++iagtviG+Gm+alPv  aga+f++ +++l+++w+ ml+sgllllE++l+++ ++sf+tl+k+llG+k+n++ +++++f+lyiL++Ay
    EHT98769.1   8 KHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGTFILVIAWFSMLHSGLLLLEANLNYPPGSSFNTLTKDLLGQKWNVVSGITVAFVLYILTYAY 104
                   6899********************************************************************************************* PP

  Trp_Tyr_perm  99 isggGsilselleeasgialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllalllskvksdvLls...aksdtskvslvlsalPv 192
                   is++G+i+se+l+  +g++l+ar++ + +++ ++ ++++s+ a +ri++++l +k++af++++ +l++ v++++L +        s+++++++a+Pv
    EHT98769.1 105 ISANGAIISETLSAHTGLTLPARVVGIGTAAGVAGVLWISSLATSRITSLFLGVKILAFIIVFGSLFFDVDYAILSDassLSDTHSYFACIFMAIPV 201
                   ****************************************************************************97743345688999******* PP

  Trp_Tyr_perm 193 lllsfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWelivlGnlpreelariiakggnldtlveallelleskslelavelFsflAlatS 289
                   +l+sfGFhg++psl+ +++k+++k++k++++G+l+aL +yl+W ++++Gn+pre+++ iia+ggn+d+lv+++ +++  +++++++ +Fs+lA+a+S
    EHT98769.1 202 CLASFGFHGNIPSLIICYGKQKDKLVKSLVLGSLLALFVYLFWLYCTMGNIPRESFKGIIASGGNVDALVKSFMGTHPDRVIAFFLLVFSNLAVASS 298
                   ************************************************************************************************* PP

  Trp_Tyr_perm 290 flGvalglfdyladlfklsdskkgrlklglvtflpPlvlalffPegflkalgyAGlaatilavilPallawkarkkkknapyrvlgGnkllllvlli 386
                   f+Gv+lglfdyladlf++++++ gr k++l+tflpP +l+l+fP+gfl+++g AGl+at++avi+Palla+++r++++ + ++v+gG+ + ++v+++
    EHT98769.1 299 FFGVTLGLFDYLADLFNIENTAVGRGKTVLLTFLPPSLLYLIFPNGFLYGIGGAGLCATVWAVIVPALLAMQSRRRFPDQIFTVWGGRIIPAMVIIF 395
                   ************************************************************************************************* PP

  Trp_Tyr_perm 387 givlilvq 394
                   g+v+i+++
    EHT98769.1 396 GVVVIVCW 403
                   *****985 PP

>> DUF5373  Family of unknown function (DUF5373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8   0.00019       1.7      41     138 ..     140     245 ..     128     252 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00019
     DUF5373  41 ivwllaeetskvlll...lkivs..ivltaftvav...fivenkiLmrahyysalifllvplavlvllii..laflkilflnleaielksvlslvvali 129
                 ++w++   ts+++ l   +ki++  iv+    + v    + +  +L  +h y a if+ +p+ +  +     + +l i ++++++  +ks+  +  +l+
  EHT98769.1 140 VLWISSLATSRITSLflgVKILAfiIVFGSLFFDVdyaILSDASSLSDTHSYFACIFMAIPVCLASFGFHgnIPSLIICYGKQKDKLVKSL--VLGSLL 236
                 45666655555543301133332114454444433222466788999*************9986555443114455555566555444444..344455 PP

     DUF5373 130 ilcvyivYl 138
                  l vy+++l
  EHT98769.1 237 ALFVYLFWL 245
                 677777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2871.38
//
Query:       EHT98770.1  [L=468]
Description: tryptophanase/L-cysteine desulfhydrase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-89  300.2   0.0    1.7e-89  300.0   0.0    1.0  1  Beta_elim_lyase  Beta-eliminating lyase
    8.6e-05   21.9   0.0    0.00047   19.4   0.0    1.9  2  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.022   13.4   0.0      0.056   12.1   0.0    1.6  2  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.0   0.0   2.9e-93   1.7e-89       1     292 [.      46     434 ..      46     435 .. 0.99

  Alignments for each domain:
  == domain 1  score: 300.0 bits;  conditional E-value: 2.9e-93
                      E-S-GGG----HHHHHHH.HCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT.....-HHHHSST CS
  Beta_elim_lyase   1 DLlSDsvtkgteamsdaq.aaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtep.....ahihfdet 87 
                      DLl+Ds   gt+a+++++ aa+m GdesY +++++++L+dav+++fg+e++++++qG++A++i + +l+ +r++e+ ++++     ++++fd+t
       EHT98770.1  46 DLLTDS---GTGAVTQNMqAAMMRGDESYSGSRSYYALADAVKAIFGYEYTIPTHQGRGAEQIYIPVLIkKREKEKGLDRTkmvafSNYFFDTT 136
                      9*****...************************************************************99*********************** PP

                      THHHHCC--EEEEE-EBTT..........TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTH CS
  Beta_elim_lyase  88 gaiaelagvklrdlknkea..........GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARf 171
                      +++++++g ++r++++kea          G++dl++le+ ikevga    +++ + t+T+n+agGq+vsl++l+++++iak+y+ip+++D+ARf
       EHT98770.1 137 QGHSQINGCTVRNVYIKEAfdtavrhdfkGNFDLQRLEDGIKEVGA--RHVPYFVATITCNSAGGQPVSLANLKAMYQIAKQYDIPVVMDSARF 228
                      **********************************************..********************************************** PP

                      HHHH............HHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH........................................ CS
  Beta_elim_lyase 172 anaa............kslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel...................................... 215
                      a++a            +++++i +e ++y+D++ ms+kKd+++++Gg+l f+dd                                        
       EHT98770.1 229 AENAyfiqqrekeyqgWTIDVITRESYQYADMLAMSAKKDAMVPMGGLLSFKDDRVfdvytdcrtlcvvqegfptyggleggamerlsvglydg 322
                      ******************************************************88************************************** PP

                      ....HHHHHHHHHHHHT---SSTHHHHH...................................HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT CS
  Beta_elim_lyase 216 ..edylaerveqrkylggglrqagvlaa.................................leagiraleeglaslerdhktaeqlaeklelvr 274
                        +d la+r+ q +yl +gl++ gv ++                                 + agira+e+g+ +l+rd+kt++ql   +el+r
       EHT98770.1 323 mrQDWLAYRISQIQYLVDGLESTGVTCQqagghaafvdagkllphipadqfpaqalacelyKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR 416
                      ********************************************************************************************** PP

                      --EEECCGTTCCEEEEE. CS
  Beta_elim_lyase 275 laiprrvytqehldyvaa 292
                      l++pr +ytq+h+d++++
       EHT98770.1 417 LTLPRATYTQTHMDFIIE 434
                      **************9976 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.9e-08   0.00047      25     189 ..      57     226 ..      46     229 .. 0.88
   2 ?   -0.1   0.0      0.07   4.2e+02     283     358 ..     333     431 ..     328     436 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.9e-08
                    HHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHH.......HTTT-EEEEEESS-THHHHHHHHT CS
  Aminotran_1_2  25 kaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllk.......lnpgdeilvpdptyasyknilrls 113
                     ++ + a+++++  +y+ ++ +++l  a+   +g         e ++ + +G ga +  ++ l+k       l++ + +  ++ +++  +   +++
     EHT98770.1  57 TQNMQ-AAMMRGDESYSGSRSYYALADAVKAIFG--------YEYTIPTHQGRGAEQIYIPVLIKkrekekgLDRTKMVAFSNYFFDTTQGHSQIN 143
                    44555.7788888889999999999999999999........88889999999999999999998888888888999999999999999999**** PP

                    TSEEEEEEBEET........TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2 114 ggevvryplyse........edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDea 189
                    g++v+ + ++++         + + dl+ le+ +ke  ++ + + ++++ ++++  G+  +l+ l++++++ak+y + ++ D a
     EHT98770.1 144 GCTVRNVYIKEAfdtavrhdFKGNFDLQRLEDGIKEVGARHV-PYFVATITCNSAGGQPVSLANLKAMYQIAKQYDIPVVMDSA 226
                    ********99999999997766689***********999999.9**************************************87 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.07
                    HHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH.........CHHHHHHHHHHTCTEEEEEGGGGTS.............TTEEEEEC..TTS-HH CS
  Aminotran_1_2 283 krrkelrdeLaelglkvlasqsgmflltdlsae.........takelskkLleevgvyvtpgtsftv.............pgrlRitv..Agltee 354
                    ++ ++l+d+L++ g+++ +   g   ++d  ++          a++l+ +L +  g+  + + sf +              + lR+t+  A+ t+ 
     EHT98770.1 333 SQIQYLVDGLESTGVTCQQAG-GHAAFVDAGKLlphipadqfPAQALACELYKVAGIRAVEIGSFLLgrdpktgkqlpcpAELLRLTLprATYTQT 427
                    57899*****99999999874.44444444444477877777777777778888888888888888888877777777766777777766666666 PP

                    HHHH CS
  Aminotran_1_2 355 elee 358
                     ++ 
     EHT98770.1 428 HMDF 431
                    6655 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.28   1.7e+03     223     258 ..      45      80 ..      24      88 .. 0.58
   2 ?   12.1   0.0   9.3e-06     0.056     140     231 ..     169     275 ..     159     287 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.28
                 HCCCEECCHCCCCESSCHCCCCCHCCCHCHCTSCHC CS
     SepSecS 223 knllvpvGgaiiaasdesfikeiskeypgrasaaps 258
                  +ll+ +G + +  + +  ++   ++y+g  s  + 
  EHT98770.1  45 IDLLTDSGTGAVTQNMQAAMMRGDESYSGSRSYYAL 80 
                 366777777777777777777777777766665555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.3e-06
                 HHHHHHHHHHCCTCCCEEEEEECSSTT....TTB----HHHHHHHHHCCT--EEEE......GCCCCT-HH......HHHHHHHHHHHTTC-EECCCHC CS
     SepSecS 140 dvedveeiiekkreevilavlstlsff....aprspDdvkeiakiCaeydvPhlvN......gAYaiqsek......yieklkkalkvGRvdvvvksld 222
                 d++  e+ i++ +   ++  ++t +++    +p s  ++k++ +i ++yd+P ++       +AY iq+ +      +i+ + +       d    s  
  EHT98770.1 169 DLQRLEDGIKEVGARHVPYFVATITCNsaggQPVSLANLKAMYQIAKQYDIPVVMDsarfaeNAYFIQQREkeyqgwTIDVITRESYQ-YADMLAMSAK 266
                 667778888888888888888888888322246677899**************98633333378999876433333346667665443.5888888899 PP

                 HCCCEECCH CS
     SepSecS 223 knllvpvGg 231
                 k+ +vp+Gg
  EHT98770.1 267 KDAMVPMGG 275
                 999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3629.91
//
Query:       EHT98771.1  [L=197]
Description: guanosine polyphosphate pyrophosphohydrolase/synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-22   77.9   1.5    8.8e-22   77.5   1.5    1.1  1  HD_4      HD domain
     0.0015   18.7   0.2     0.0038   17.4   0.2    1.7  1  HD        HD domain


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   1.5   9.8e-26   8.8e-22       1     129 [.       9     132 ..       9     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 9.8e-26
        HD_4   1 Alelaaelha...gqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeq 95 
                 A+ +a+++ha   ++rk+t+ep++ h+++v+++++++  d  +++Aa Lhd+ved+  +l +i+++fG+evarLve +++ +  q +      +++a++
  EHT98771.1   9 ARRYATQVHAesgQRRKYTDEPYIVHPTAVVELVRSVTDDPVMLAAAWLHDTVEDTaTTLNDIENHFGPEVARLVEMLTDTAPTQAK------NRAARK 101
                 899**********************************99999*************96777***********************9999......999*** PP

        HD_4  96 venlRkmLlAmveDirvvliklAdrlqtlrslaa 129
                 + ++R+   A +++ ++  iklAd +++ r++  
  EHT98771.1 102 MAHFRH--TAQASP-EAQTIKLADIIDNTRAIVR 132
                 ******..777667.*************999854 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   4.3e-07    0.0038       2     121 ..      32     126 ..      31     127 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.3e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHTTCCHHHHHHHHH CS
          HD   2 leHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld.ledvaklirehheswegkkrpr 99 
                 + H+ +V +l r   +d          l+aa lHD+++++     +++ e          +g e++r ve + +++ +++  +++r++ +         
  EHT98771.1  32 IVHPTAVVELVRSVTDDPV-------MLAAAWLHDTVEDTAT--TLNDIE--------NHFGPEVARLVEMLTDTApTQAKNRAARKMAHFRH------ 107
                 5699999999999999998.......9*************33..233222........22333333333333322333333444444444444...... PP

                 HHHCCTSCHHHHHHHHHHHHHH CS
          HD 100 glaerqlslearivklaDrlaa 121
                    + q s+ea+ +klaD +++
  EHT98771.1 108 ---TAQASPEAQTIKLADIIDN 126
                 ...3499***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1505.49
//
Query:       EHT98772.1  [L=154]
Description: organic hydroperoxide resistance transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-18   64.0   0.1    1.5e-17   63.2   0.1    1.4  1  MarR             MarR family
    5.2e-12   46.1   0.1    1.5e-11   44.6   0.0    1.7  2  HTH_27           Winged helix DNA-binding domain
    1.1e-11   44.4   0.0    1.7e-11   43.8   0.0    1.3  1  MarR_2           MarR family
    4.5e-06   26.5   0.8    9.4e-05   22.2   0.1    2.4  3  TFIIE_alpha      TFIIE alpha subunit
    1.1e-05   25.4   0.0    1.8e-05   24.7   0.0    1.4  1  HTH_20           Helix-turn-helix domain
    4.1e-05   23.4   0.0    0.00014   21.7   0.0    2.0  2  TrmB             Sugar-specific transcriptional regulator Trm
    5.4e-05   22.7   0.0    8.5e-05   22.0   0.0    1.3  1  HTH_24           Winged helix-turn-helix DNA-binding
    7.6e-05   22.5   0.0    0.00013   21.7   0.0    1.3  1  HxlR             HxlR-like helix-turn-helix
     0.0002   21.7   0.0    0.00039   20.7   0.0    1.6  1  Penicillinase_R  Penicillinase repressor
    0.00021   21.4   0.0    0.00036   20.6   0.0    1.4  1  HTH_34           Winged helix DNA-binding domain
    0.00069   19.4   1.7    0.00091   19.0   0.0    2.1  1  HTH_5            Bacterial regulatory protein, arsR family
     0.0068   16.3   0.0      0.011   15.6   0.0    1.4  1  PadR             Transcriptional regulator PadR-like family
     0.0089   16.4   0.0       0.02   15.2   0.0    1.6  1  Rrf2             Transcriptional regulator
  ------ inclusion threshold ------
      0.022   14.5   0.1      0.038   13.8   0.1    1.4  1  HTH_IclR         IclR helix-turn-helix domain
      0.033   13.9   0.1      0.065   13.0   0.1    1.5  1  HTH_DeoR         DeoR-like helix-turn-helix domain
      0.037   14.2   0.0      0.064   13.4   0.0    1.4  1  HTH_28           Helix-turn-helix domain
      0.063   13.4   0.0       0.11   12.6   0.0    1.4  1  B-block_TFIIIC   B-block binding subunit of TFIIIC
      0.071   13.1   0.1       0.12   12.4   0.1    1.4  1  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.078   12.8   0.1         13    5.7   0.0    2.3  2  HTH_23           Homeodomain-like domain
       0.08   13.5   0.0       0.13   12.8   0.0    1.4  1  Mga              Mga helix-turn-helix domain
      0.087   13.0   0.1       0.17   12.1   0.1    1.5  1  DprA_WH          DprA winged helix domain
      0.092   13.0   0.0       0.17   12.1   0.0    1.4  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
       0.11   11.3   0.0       0.12   11.2   0.0    1.1  1  HTH_micro        HTH-like
       0.18   11.5   0.7       0.44   10.2   0.1    1.9  2  GntR             Bacterial regulatory proteins, gntR family


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1     2e-20   1.5e-17       1      59 []      45     103 ..      45     103 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 2e-20
                 --HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTSE CS
        MarR   1 ltltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRev 59 
                 +t++q++++  l++q++l+vse+ ++l ++++t+t +l+rLe +Gli+R++s +D R+v
  EHT98772.1  45 ITYPQYLVMLVLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQDERQV 103
                 79*******************************************************97 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.4   3.3e+03      23      43 ..      20      40 ..      17      42 .. 0.83
   2 !   44.6   0.0     2e-14   1.5e-11       2      68 .]      46     111 ..      45     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.4
      HTH_27 23 dlcgrlnvedshisyslkkLt 43
                +lc++l+    +++++ +kL 
  EHT98772.1 20 QLCFALYSANLAMHKVYRKLL 40
                799999999999999988885 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 2e-14
      HTH_27   2 trqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 t++q lv+ ++  +++  + +++c+rl +++++    lk+L+++GL+ r+++++d r++ v+lTd+G
  EHT98772.1  46 TYPQYLVMLVLW-QQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQDERQVVVSLTDSG 111
                 89999**99999.9***************************************************99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   2.3e-14   1.7e-11       2      62 .]      44     102 ..      43     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.3e-14
                 T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62 
                 ++t  q+ v+++L   +   ltv+e+++rl l+ ++++ +lkrL+ aGL+ r+++  D R+
  EHT98772.1  44 DITYPQYLVMLVLWQQDS--LTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQDERQ 102
                 67899************9..**************************************995 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         6   4.5e+03      48      60 ..      22      34 ..      19      46 .. 0.66
   2 !   22.2   0.1   1.3e-07   9.4e-05      16      69 ..      50     103 ..      45     108 .. 0.95
   3 ?    2.1   0.0      0.22   1.7e+02      25      48 ..     128     150 ..     114     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6
                 HHHHHHCTSEEEE CS
  TFIIE_alpha 48 LnrLyearlvkyk 60
                  ++Ly+a l+  k
   EHT98772.1 22 CFALYSANLAMHK 34
                 5677777776544 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.3e-07
                  HHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEETTTEE CS
  TFIIE_alpha  16 vlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrdeeksw 69 
                   lv+ vL ++  +t  ++ + l +d   l +lL rL +a+l++ +r+r +e ++
   EHT98772.1  50 YLVMLVLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQDERQV 103
                  589**********************************************99987 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.22
                  TTSEBHHHHHHHHTS-HHHHHHHH CS
  TFIIE_alpha  25 kgevteedlakelkidlnelrklL 48 
                   +  +e+++   lk++ln+lr  L
   EHT98772.1 128 ASDCSEDEMY-ALKLQLNQLRDKL 150
                  6778899986.6899999999765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.5e-08   1.8e-05      19      61 .]      51      98 ..      28      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.5e-08
                H.....STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20 19 L.....araegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                L     ++ + lt+se++erl l+ +tl   L+ Le agL+ ++r+++
  EHT98772.1 51 LvmlvlWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQ 98
                155566***************************************985 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.5   2.6e+03      12      20 ..      34      42 ..      33      49 .. 0.78
   2 !   21.7   0.0   1.8e-07   0.00014      12      58 ..      51      97 ..      39     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.5
                CHCHHHHHH CS
        TrmB 12 kvYlaLlkl 20
                kvY +Ll++
  EHT98772.1 34 KVYRKLLSQ 42
                789999976 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.8e-07
                CHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 12 kvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                 v l+L +++++t++ei e+l ++ ++    L++Le++Gl++r+++r
  EHT98772.1 51 LVMLVLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSR 97
                34445559************************************998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.1e-07   8.5e-05       9      47 ..      53      91 ..      49      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-07
      HTH_24  9 LelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + +L ++ +++ +e++erl l ++t++  lkrLe++GlI
  EHT98772.1 53 MLVLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLI 91
                56799999******************************9 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.7e-07   0.00013      12      75 ..      54     117 ..      49     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.7e-07
                 HHHTT.S-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHH CS
        HxlR  12 vellk.gkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepv 75 
                   l +  +   se+ ++l  +   +L+  L++Le+ gli+r+   +   +v  slt+ G +l++ 
  EHT98772.1  54 LVLWQqDSLTVSEICERL-FLDSATLTPLLKRLENAGLINRQRSRQDERQVVVSLTDSGWALRQQ 117
                 444443666778888888.88999***********************************999875 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.3e-07   0.00039       7      57 ..      51      97 ..      45     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.3e-07
                     HHHHHHHHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEET CS
  Penicillinase_R  7 evmeilwekgeatvkevveeleeekelaysTVktllrrLvkKgllsrekeg 57
                      vm +lw+++++tv+e+ e+l  +     +T + ll+rL++ gl++r+++ 
       EHT98772.1 51 LVMLVLWQQDSLTVSEICERLFLD----SATLTPLLKRLENAGLINRQRSR 97
                     59******************9887....99****************99863 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.8e-07   0.00036       5      66 ..      52     112 ..      49     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.8e-07
      HTH_34   5 vlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGr 66 
                 v+ +L ++d+ + +e+ e l + ++ L   lk Le+ag i+++ + ++  ++ ++++T+ G 
  EHT98772.1  52 VMLVLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQDE-RQVVVSLTDSGW 112
                 899******************************************9999.9********995 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-06   0.00091      13      46 ..      58      92 ..      50      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
                T.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 13 e.gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                +  +l+v+e++e l l  +t+   Lk+L++aGL++
  EHT98772.1 58 QqDSLTVSEICERLFLDSATLTPLLKRLENAGLIN 92
                4378*****************************98 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05     0.011      31      70 ..      75     112 ..      63     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCC CS
        PadR  31 eGslYpaLkrLekeglveseweesgegpprkyYrlTdaGr 70 
                  ++l p+LkrLe+ gl+++++++  ++ +  +  lTd G 
  EHT98772.1  75 SATLTPLLKRLENAGLINRQRSR--QDERQVVVSLTDSGW 112
                 67899**************9887..578888889999995 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.7e-05      0.02      14      59 ..      51      95 ..      37      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-05
                HHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        Rrf2 14 llyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvr 59
                l++L + ++++ ++++ei er  +    l  +l++L++agl++ +r
  EHT98772.1 51 LVMLVLWQQDS-LTVSEICERLFLDSATLTPLLKRLENAGLINRQR 95
                67777777776.******************************9887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   5.1e-05     0.038      17      50 ..      60      93 ..      52      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.1e-05
                SS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 17 qeltlselArrtglpkStvhRlLqtLvelGyveq 50
                  lt+se+++r+ l  +t   lL+ L++ G++ +
  EHT98772.1 60 DSLTVSEICERLFLDSATLTPLLKRLENAGLINR 93
                459****************************976 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   8.7e-05     0.065       8      47 ..      55      94 ..      49      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-05
    HTH_DeoR  8 llkqqgklsveelvellgvSeaTiRRDLneLeeqglltRt 47
                 l+qq++l+v e++e+l    aT    L+ Le++gl+ R 
  EHT98772.1 55 VLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQ 94
                59*****************999999999999999999996 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.6e-05     0.064      10      51 ..      57      97 ..      51      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.6e-05
      HTH_28 10 aaGh..svreaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                ++++  +v+e++++l +++ t+  ++kr+e    agL +r r++
  EHT98772.1 57 WQQDslTVSEICERLFLDSATLTPLLKRLEN---AGLINRQRSR 97
                3666689************************...7789998854 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015      0.11      21      65 ..      64     106 ..      56     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
  B-block_TFIIIC  21 qsdLakeskqdprslfyrlksLekkgLIvkqsiidsatkksists 65 
                      s+++  +  d+  l+ +lk Le+ gLI +q    ++++++ ++s
      EHT98772.1  64 VSEICERLFLDSATLTPLLKRLENAGLINRQRS--RQDERQVVVS 106
                     4555555668999******************99..8888887776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00015      0.12      21      55 ..      61      95 ..      34     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrgr 55
                +lt  e+ ++l l   t++ +l++L+++gli r+r
  EHT98772.1 61 SLTVSEICERLFLDSATLTPLLKRLENAGLINRQR 95
                68999***************************542 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.018        13      10      46 ..      53      90 ..      51      93 .. 0.81
   2 ?    4.9   0.1     0.033        24       3      25 ..      97     119 ..      95     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
      HTH_23 10 illllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                +l l ++  l+v+eI+++L     T+   lkr ++ Gl
  EHT98772.1 53 MLVLWQQdSLTVSEICERLFLDSATLTPLLKRLENAGL 90
                6777777899*********9999998888888766775 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.033
      HTH_23   3 sereRlrillllaeGlsvreIAr 25 
                 + +eR+ ++ l + G+  r+ A+
  EHT98772.1  97 RQDERQVVVSLTDSGWALRQQAE 119
                 779*************9999886 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00018      0.13       4      56 ..      31      87 ..      28      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00018
                XTHHHHHHHHHH....SHHHHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHH CS
         Mga  4 sleellqellke....slkyqllkflfeeeevsieelaqelyiSestlkrkikelnk 56
                ++++++++ll +      +y ++  l +++++++ e++++l++ ++tl   +k+l++
  EHT98772.1 31 AMHKVYRKLLSQmditYPQYLVMLVLWQQDSLTVSEICERLFLDSATLTPLLKRLEN 87
                566677777776655556778888888**************************9975 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00022      0.17      22      58 ..      58      94 ..      49      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
     DprA_WH 22 gpePvhvDqLvrrtglpaaevsaaLleLELaGlverl 58
                ++++++v ++++r+ l+ a++ ++L  LE aGl+ r+
  EHT98772.1 58 QQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQ 94
                56889999**************************997 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00023      0.17      21      55 ..      60      94 ..      53      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
                    SSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress 21 kvvktkdlaerLnvspssVsemlkkLekdGyveye 55
                    +  +++++ erL    ++ +  lk+Le++G+++ +
      EHT98772.1 60 DSLTVSEICERLFLDSATLTPLLKRLENAGLINRQ 94
                    667899*************************9866 PP

>> HTH_micro  HTH-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.12      94     160 ..      50     115 ..      20     140 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
   HTH_micro  94 ykivdflvkakdyvkaaelraklnidpKklfYvikkLakkglieqktkeeak..ivikinkDesgsvvk 160
                 y  v +++ ++d  +++e+ ++l +d+ +l  ++k+L++ gli+ +++ + +  +v+ +    sg   +
  EHT98772.1  50 YL-VMLVLWQQDSLTVSEICERLFLDSATLTPLLKRLENAGLINRQRSRQDErqVVVSLTD--SGWALR 115
                 33.44566778999*****************************987765443337766655..555444 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00059      0.44      22      58 ..      60      95 ..      51      98 .. 0.92
   2 ?   -1.6   0.0       2.9   2.1e+03      42      60 ..     101     119 ..     101     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00059
                SB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        GntR 22 dkLPsereLaaefgVsrttvReALrrLeaeglverrq 58
                d L +++e+++++  +  t+   L+rLe +gl+ r++
  EHT98772.1 60 DSL-TVSEICERLFLDSATLTPLLKRLENAGLINRQR 95
                789.******************************997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.9
                 HHHHHHHHHTTSEEEETTC CS
        GntR  42 ReALrrLeaeglverrqgr 60 
                 R++   L+  g++ r+q +
  EHT98772.1 101 RQVVVSLTDSGWALRQQAE 119
                 6677789999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1186.27
//
Query:       EHT98773.1  [L=142]
Description: organic hydroperoxide resistance protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-17   61.8   0.0    9.5e-17   61.3   0.0    1.2  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   5.3e-21   9.5e-17       3      99 ..      44     138 ..      41     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 5.3e-21
                 XSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---.SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSEE CS
        OsmC   3 gsgpsPeelllaalasCfaitlravakkkgikl.edleveveaerdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkvel 99 
                 g+ ++Pe+l++a++++Cf  +++ va + +i + +d+ +e e+   p +     +i+ ++++++p+ d e++++kl+++a+  Cp+sn+ +n+++v+l
  EHT98773.1  44 GEVTNPEQLFAAGYSACFLGAMKFVAGRDKIAMpKDAWIEGEVGIGPIPN--GFGIEATLNIHLPDMD-EAEAQKLVDAAHIVCPYSNATRNNIDVTL 138
                 5679*********************************9999998887754..5789**********99.7**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1104.31
//
Query:       EHT98774.1  [L=563]
Description: putative metal dependent hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-43  149.2   0.1    2.3e-43  148.8   0.1    1.2  1  Sulfatase  Sulfatase
    3.1e-20   72.6   7.9    3.1e-20   72.6   7.9    1.9  2  EptA_B_N   Phosphoethanolamine transferase EptA/EptB


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.1   2.6e-47   2.3e-43       3     309 .]     250     538 ..     248     538 .. 0.86

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 2.6e-47
                 EEEEEESSE-TTGSGGGTTTSCSSHHHHHHH.HTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEE CS
   Sulfatase   3 vvliladdlgagdlglyggktattpnldrla.eeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaig 100
                 vv++++++++++++gl g++++ttp+l+  + ++ + f+   s+ +++  s+ +++ +   + ++         +g+  +e+++  ++ke G+ + ++ 
  EHT98774.1 250 VVFVIGETTRWDHMGLLGYERNTTPKLS--QeKNLVAFRGE-SCDTATKLSLRCMFVREGGTMDN---------PGRTLKEQNVFAVMKELGFTSELFA 336
                 9**************************9..73566666666.899***********999888888.........9********************5555 PP

                 ES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGSTT CS
   Sulfatase 101 kwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarndkpfflylatlapHappeapdeyakkyatf 199
                   +  w+              ++++++++   + + ++  +     ++ + ++d  l+ e++  l++ ++ +++++l+t ++H    ++++y+ ++a++
  EHT98774.1 337 MQSEVWF--------------YDNINANNFSFREQIGSEPR-----NQGKSVDDMLLVPELQASLQRYPKGKHLVVLHTKGSHY--LYSQRYPRSFARY 414
                 5555554..............44444333333333333222.....23567*************86666**************8..9************ PP

                 TTCCCCCCH.....HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...... CS
   Sulfatase 200 fddgseaar.....qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap...... 287
                 ++++   ++     ql++ay+nsv yvD ++++vl++L     +++++v++ SDhg+s+ + n +l+g++++ a+++++rvP++vw +++  +      
  EHT98774.1 415 QPECMGVDEtcskaQLINAYDNSVLYVDSMLDSVLDQL----RDKKAIVFYASDHGESISD-NMHLHGTPREMAPPEQFRVPMMVWASDKYLAdstnre 508
                 ******98899999************************....*****************77.*********************************9999 PP

                 .......EEECSEEE.GGGHHHHHHHHTTE CS
   Sulfatase 288 .......rvseelvs.hiDlfptildlagi 309
                        +++ + ++ h++lf til+++g+
  EHT98774.1 509 nferlqaQQRTGKTHrHVELFDTILGCLGY 538
                 9998887444444446***********996 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   3.2     0.065   5.8e+02      62     113 ..      11      63 ..       6      68 .. 0.77
   2 !   72.6   7.9   3.5e-24   3.1e-20       2     140 ..      56     197 ..      55     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.065
                 T--HHHHHHHHHHTHHHHHHHHH-EE----HHHHHHHHH.HHHHHHHHHHHHH CS
    EptA_B_N  62 llslklllyllllgvlPallllrvkikrksllkellkrl.alllvallvivlv 113
                  lsl l+lyl +l  lP+++  ++ + ++s+  ++l+ l  ++++ ll ++l+
  EHT98774.1  11 KLSLLLALYLGILLNLPIFYRRFAGLLTTSTVTAWLTALtEVVAIVLLTFFLM 63 
                 58899999999*******99999999888888888888866666666655554 PP

  == domain 2  score: 72.6 bits;  conditional E-value: 3.5e-24
                 HHHHHHHHHHH--TTTH..HHHHHHHHHHHHHHHHHHHHS----SHHHHHHHHH--HHHHHTT--HHHHHHHHHHTHHHHHHHHH-EE..----HHHHH CS
    EptA_B_N   2 laalllllsllslryll..kpllilllllsaaasYfmdtYgvvidkdMirNvleTdvaEasellslklllyllllgvlPallllrvki..krksllkel 96 
                 ++++++l++llsl + +  ++l++l++l+s+aa+Y+m +++vvi ++++ +v++Td++ ++e +  +++l+++l  +lP+++++r ++  + +++l++ 
  EHT98774.1  56 VLLTFFLMRLLSLGGRVfyRILATLIVLISVAAAYYMAFFNVVIGYGIVASVMTTDTDLSKEVVGYHFILWMVLASALPLFFIWRNSLsmTLNEQLRTP 154
                 6788999999998554445******************************************************************988878999***** PP

                 HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-TTGGGGSTTHHH CS
    EptA_B_N  97 lkrlalllvallvivlvallfykdyaslfRnnkelrylinPtny 140
                  +rl+ +l+ l++++lv l   + +  l +nn+e+ +  +P++ 
  EHT98774.1 155 GQRLKPTLILLACVALVWLP-IRYLDKLQKNNEEVTNIDLPSYG 197
                 ****9999999998888777.77888899999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 4506.59
//
Query:       EHT98775.1  [L=536]
Description: periplasmic-binding component of an ABC superfamily dipeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.4e-111  371.2   8.5   6.6e-111  370.9   8.5    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.9   8.5  3.7e-115  6.6e-111       1     375 [.      73     453 ..      73     455 .. 0.95

  Alignments for each domain:
  == domain 1  score: 370.9 bits;  conditional E-value: 3.7e-115
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSS......B-SHHHHHHHHHHHHTGGGHCTTHHHHHC........TCTEEEEEEEETTEEEEEESSE CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGt......pltAeDvvfsferlldpdtasgyasllee........dqdikkveavddytvrftlkkp 85 
                 e+vp+LAe+ w+vs+Dgktytf+LR gvk++  +      +++A+Dvvfsfer ld+++++ + s  ++         + i k+e+vdd+tvrf+l++p
  EHT98775.1  73 ELVPGLAEK-WDVSADGKTYTFHLRNGVKWQTTKdfkptrEFNADDVVFSFERQLDKNNKYHNVSGGSYeyfegmdmPKLISKIEKVDDHTVRFVLTRP 170
                 689******.7**********************99***************************999999999**************************** PP

                 TTTTTTHCHHHHHHHGC...CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEEST CS
   SBP_bac_5  86 nalfltllaavpasiak...kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaep 181
                  a+fl+ l +  asi +   +    ++ + ++ + +pvgtGP++l++++++++i +++npdYw g kpk+dr++f++ pd+++r a+lq+Ge++++ +p
  EHT98775.1 171 EAPFLADLGMDFASIMSkeyADNMLKAGTPEKIDLNPVGTGPFVLQQYQKDSRILYKANPDYW-GTKPKIDRLVFSITPDASVRYAKLQKGECQIMPYP 268
                 998777777777777776774444566779999******************************.*********************************** PP

                 TCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHH CS
   SBP_bac_5 182 ppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLk 280
                 +p+di+++k+++++++  e+pg++v+yl+fNt+k+p+d+++vRqAl++A+++++i++av++g ++pa++l+pp++++++++ k++  aydpekAk+lLk
  EHT98775.1 269 NPADIASMKKDSKINL-MEQPGLNVGYLSFNTEKKPLDNVKVRQALTMAVNKKAIIDAVYQGAGQPAKNLIPPTMWSYNNDVKDY--AYDPEKAKALLK 364
                 ****************.***********************************************************999999987..89********** PP

                 HTT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCT CS
   SBP_bac_5 281 eaGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssga 375
                 eaG +dg+   l      + + ++  ++++  ++ae+iq++++kiG+k+++ t++w  +yl+r+k+g+++ +++gw++d++dpdnf+ +++s+++a
  EHT98775.1 365 EAGMPDGFSIDL------WAMPVQRPYNPNArRMAEMIQADWAKIGVKAKIVTYEW-GEYLKRAKAGEHQTVMMGWTGDNGDPDNFFATLFSCAAA 453
                 ********9776......99998888777777************************.***********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3742.05
//
Query:       EHT98776.1  [L=339]
Description: membrane component of an ABC superfamily dipeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-46  158.7  12.8    1.2e-46  158.7  12.8    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.36   10.9   2.0       0.62   10.1   0.1    2.2  2  UPF0370       Uncharacterised protein family (UPF0370)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.17   1.6e+03      27      43 ..      10      26 ..       5      71 .. 0.63
   2 !  158.7  12.8   1.4e-50   1.2e-46       1     184 [.     114     336 ..     114     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.17
  BPD_transp_1 27 llslPsfvlaillvlvf 43
                  +l +P+f+ + ll+++f
    EHT98776.1 10 GLVIPTFIGITLLTFAF 26
                  56677777555555444 PP

  == domain 2  score: 158.7 bits;  conditional E-value: 1.4e-50
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf........................................vilsilghlilpvi 57 
                   gi++G+laa++r++++d+    ++ +++s+P+f+++i+l++++                                         +++++ h+ilp+i
    EHT98776.1 114 GIPVGVLAAVKRGSVFDHTAVEISLTGYSMPIFWWGIMLIMLVsvqlnltpvsgrvadtvflddshpltgfmlidtfiwgepgDFKDAVMHMILPAI 210
                   89**************************************999****************************************************** PP

  BPD_transp_1  58 illllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis 154
                   +l+++ +a +vr++r+++l++l +d++++ara+G++r ++++ ++l+na+ p++t ++l++g ll ga+l+e+++swpGlg++l+ea++ +dy+  +
    EHT98776.1 211 VLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIVVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIEALQRRDYPVVQ 307
                   ************************************************************************************************* PP

  BPD_transp_1 155 nggvlalviavlllnlvadilqrlldprvr 184
                    ggvl ++i+++l+nl++d+l+ +++pr+r
    EHT98776.1 308 -GGVLLTAILIILVNLLVDLLYGVVNPRIR 336
                   .****************************9 PP

>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   6.9e-05      0.62       7      41 ..     146     181 ..     143     190 .. 0.88
   2 ?   -1.3   0.4      0.26   2.4e+03      11      21 ..     315     325 ..     312     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.9e-05
     UPF0370   7 YWW.villllvGillngikeLkrvdhkkfLdnkpel 41 
                 +WW ++l++lv + ln      rv  + fLd+ + l
  EHT98776.1 146 FWWgIMLIMLVSVQLNLTPVSGRVADTVFLDDSHPL 181
                 6884689999*********************98877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.26
     UPF0370  11 illllvGilln 21 
                 il++lv +l++
  EHT98776.1 315 ILIILVNLLVD 325
                 89999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2404.30
//
Query:       EHT98777.1  [L=300]
Description: membrane component of an ABC superfamily dipeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-28   97.9  13.2    5.8e-28   97.9  13.2    2.4  3  BPD_transp_1     Binding-protein-dependent transport system i
    5.5e-16   58.3   0.1    5.5e-16   58.3   0.1    4.1  4  OppC_N           N-terminal TM domain of oligopeptide transpo
  ------ inclusion threshold ------
       0.83    9.8   0.1       0.83    9.8   0.1    3.6  3  DUF624           Protein of unknown function, DUF624


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.011        63     158     181 ..      31      54 ..      16      55 .. 0.77
   2 ?   -2.6   0.1      0.64   3.8e+03     147     171 ..      93     114 ..      74     115 .. 0.60
   3 !   97.9  13.2   9.7e-32   5.8e-28       1     184 [.     116     299 ..     116     300 .] 0.98

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.011
  BPD_transp_1 158 vlalviavlllnlvadilqrlldp 181
                    +++++++++l+l++ i++++l+p
    EHT98777.1  31 GAVIGLVYIILMLLIAIFAEVLAP 54 
                   567888888888888888888776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.64
  BPD_transp_1 147 gydyseisnggvlalviavlllnlv 171
                     +y + +   +l ++++v++l+l+
    EHT98777.1  93 RLMYGARL---SLLVGCMVVVLSLI 114
                   44444333...66677777777766 PP

  == domain 3  score: 97.9 bits;  conditional E-value: 9.7e-32
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+++G+la+ + ++ +d  +++l++++l+lPs++la++lv       i+g +i    i+l+++ ++ y+rl+r+a+l ++++d+v a+ + Ga+  +
    EHT98777.1 116 GVIFGLLAG-YIGGAVDATIMRLVDIMLALPSLLLALVLV------AIFGPSIVNaSIALTFVALPHYIRLTRAAVLVEVNRDYVTASGVAGAGMLR 205
                   899******.******************************......9***8888879**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldprv 183
                    ++  +lPn l p+i ++ l f +++ + ++l flg    +g +  ++++g ++s  +           ++ l++++ vl++nl  d l ++ldp++
    EHT98777.1 206 QMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLG----MGAQPPTPEWGTMLSDVLqyaqsawwvvTFPGLVILLTVLAFNLMGDGLRDALDPKL 298
                   ************************************....***************999**************************************9 PP

  BPD_transp_1 184 r 184
                   +
    EHT98777.1 299 K 299
                   7 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   9.3e-20   5.5e-16       1      51 []      17      69 ..      17      69 .. 0.88
   2 ?   -1.3   2.1      0.37   2.2e+03      20      33 ..     107     120 ..     101     131 .. 0.59
   3 !    7.9   1.8   0.00051       3.1      22      37 ..     147     162 ..     146     177 .. 0.84
   4 ?   -0.4   0.1      0.19   1.1e+03      19      29 ..     273     283 ..     272     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 9.3e-20
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp..qdli.qnllpP 51
                ++ q++w+ FkrNk Av+glv ++l+lliaifa+++aP++p  q ++ + l pP
  EHT98777.1 17 TPIQEFWHYFKRNKGAVIGLVYIILMLLIAIFAEVLAPHGPaeQ-FRdALLHPP 69
                789**************************************954.442447777 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.37
      OppC_N  20 lvilllllliaifa 33 
                 +v++l l++ +if+
  EHT98777.1 107 MVVVLSLIFGVIFG 120
                 44555555556664 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00051
      OppC_N  22 illlllliaifaPlia 37 
                 +ll+l+l+aif+P i+
  EHT98777.1 147 LLLALVLVAIFGPSIV 162
                 5899*********995 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.19
      OppC_N  19 glvilllllli 29 
                 glvill++l++
  EHT98777.1 273 GLVILLTVLAF 283
                 78999988876 PP

>> DUF624  Protein of unknown function, DUF624
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00014      0.83      44      74 ..      18      46 ..      12      50 .. 0.71
   2 ?   -2.3   4.0      0.86   5.1e+03      10      22 ..     110     122 ..     102     170 .. 0.68
   3 ?    1.0   0.2     0.078   4.6e+02       3      24 ..     261     282 ..     259     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00014
      DUF624 44 ifktFweaYKknfkksnllglillliglill 74
                ++++Fw+++K+n  k+ ++gl++++++l+++
  EHT98777.1 18 PIQEFWHYFKRN--KGAVIGLVYIILMLLIA 46
                789********9..55666666555555544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.86
      DUF624  10 lftllglvvfglf 22 
                 +++l+++v+fgl 
  EHT98777.1 110 VLSLIFGVIFGLL 122
                 4445555555543 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.078
      DUF624   3 ylNllwllftllglvvfglfPA 24 
                 y +  w+++t+ glv++    A
  EHT98777.1 261 YAQSAWWVVTFPGLVILLTVLA 282
                 5667899999999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2198.78
//
Query:       EHT98778.1  [L=328]
Description: ATP-binding component of an ABC superfamily dipeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-28   97.7   0.0    1.1e-27   97.2   0.0    1.2  1  ABC_tran         ABC transporter
    2.4e-18   66.4   0.1    4.4e-18   65.6   0.1    1.5  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    2.4e-08   33.7   0.0    3.5e-08   33.2   0.0    1.2  1  SMC_N            RecF/RecN/SMC N terminal domain
      1e-06   28.8   0.1    1.4e-05   25.0   0.0    2.0  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00081   19.7   1.8       0.43   10.8   0.1    2.2  2  AAA_22           AAA domain
  ------ inclusion threshold ------
       0.12   11.7   0.0       0.24   10.8   0.0    1.4  1  CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF
       0.12   10.3   0.1       0.22    9.6   0.1    1.3  1  Herpes_ori_bp    Origin of replication binding protein
       0.14   10.9   0.2       0.38    9.5   0.2    1.7  1  ABC_ATPase       Predicted ATPase of the ABC class
       0.21   11.4   0.0       0.39   10.5   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   5.4e-31   1.1e-27       2     136 ..      24     181 ..      23     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 5.4e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 +++s ++++g++v+ivGe+G+GKS    +++gl +      +++++++++dlk+    ++++ + +e+++++q+  ++l+p +tv+ +           
  EHT98778.1  24 DRISYQVEQGQVVGIVGESGSGKSVSSLAIMGLIDFpgkvMAEKLEFNQRDLKRisekERRQLVGAEVAMIFQDpmTSLNPCYTVGYQimeaikvhqgg 122
                 789******************************99644445555588888888899988999999*********9999*******9999********** PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++++++ ++l+++g+++ ++++++  p++LSgG+ qrv++a+a++++pkll++DEpt
  EHT98778.1 123 nksTRRQRAIDLLNQVGIPD-PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181
                 98777778***********9.88999*********************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.1   2.2e-21   4.4e-18       1      65 []     233     297 ..     233     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.2e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE g++s++f+ p+HPYT+aLlr++p++ + k +l++++g +p   +++ GC+ +pRCp+a++ C
  EHT98778.1 233 VESGKASDIFKAPRHPYTQALLRALPEFAADKARLASLPGVVPGKYDRPMGCLLNPRCPYANDRC 297
                 8***************************************************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.7e-11   3.5e-08      25     213 ..      34     228 ..      19     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.7e-11
                 SEEEEEESTTSSHHHHHHHHHHHC...TT.TTTT..TTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvL...Gersakk..lrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                 ++  ivG+ GSGKs    Ai+ ++   G+  a+k  + +++l++ i++ ke++++  aev+++f+++  +    ++ +++  ++++  +  ++  +k+ 
  EHT98778.1  34 QVVGIVGESGSGKSVSSLAIMGLIdfpGKVMAEKleFNQRDLKR-ISE-KERRQLVGAEVAMIFQDPMTS---LNPCYTVGYQIMEAIK-VHQGGNKST 126
                 5678**********766666443322233333440055555555.555.7999***********999998...5566666666666555.333345555 PP

                 -HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlekad 206
                 +++   +ll+++gi            +LSgG  + v++a+ +A    +p+ l + De   aLD +  +++ ell   +k++n+ +i i+++  ++++a 
  EHT98778.1 127 RRQRAIDLLNQVGIPDPasrldvyphQLSGGMSQRVMIAMAIAC---RPK-LLIADEPTTALDVTIQAQIIELLLdlQKQENMALILITHDLALVAEAA 221
                 56777778888887665677777777***********9999875...555.7899**********999999988746777789********99999996 PP

                 CEEEEEE CS
                 xxxxxxx RF
       SMC_N 207 klvgvtk 213
                 + + v+ 
  EHT98778.1 222 HHIIVMY 228
                 6665554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.091   1.8e+02       2      14 ..      36      48 ..      35      85 .. 0.77
   2 !   25.0   0.0   7.1e-09   1.4e-05     184     302 ..     127     217 ..     115     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.091
      AAA_21  2 nvliGpNgsGKSn 14
                 +++G  gsGKS 
  EHT98778.1 36 VGIVGESGSGKSV 48
                689********96 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 7.1e-09
      AAA_21 184 llqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell 282
                 ++qr ++ l++v+i++ ++                          + ++ +++lS G+ +   ++ a++ ++   +ll+ DEp + L+  +++ ++ell
  EHT98778.1 127 RRQRAIDLLNQVGIPDPAS--------------------------RLDVYPHQLSGGMSQRVMIAMAIACRP---KLLIADEPTTALDVTIQAQIIELL 196
                 5666667777777777776..........................57899********99955555555555...89********************** PP

      AAA_21 283 kelsr.ngaQviltTHSplll 302
                  +l++ ++  +il TH+  l+
  EHT98778.1 197 LDLQKqENMALILITHDLALV 217
                 55555599*********9997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0015       3.1       5      21 ..      33      49 ..      29      56 .. 0.83
   2 !   10.8   0.1   0.00022      0.43      50     128 ..     124     210 ..     110     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
      AAA_22  5 agilvvtGesGtGKTtl 21
                 +++ ++GesG+GK+++
  EHT98778.1 33 GQVVGIVGESGSGKSVS 49
                667779*********98 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00022
      AAA_22  50 stsskdllrellralglelka.....erlsseell.ealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 ++++++ + +ll+++g +  a     ++++++  + +++  a+  + +++lli DE    l+   +++++e L +l++  + +++liL+
  EHT98778.1 124 KSTRRQRAIDLLNQVGIPDPAsrldvYPHQLSGGMsQRVMIAMAIACRPKLLIADEPTTaLDvtiQAQIIELLLDLQK--QENMALILI 210
                 458899999999****999996666655555555544444444444448*******9999989777************..********8 PP

>> CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF1-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.24     145     182 ..     223     261 ..     209     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                      HHHHHHHHHHHGGGGG-TTTSTT.-HHHHHHHHHHHHHH CS
  CNOT1_CAF1_bind 145 evvipfvckvLesakkSkvFkpp.npWlmailklLaely 182
                      ++++    +v+es k S +Fk p  p+++a+l+ L e+ 
       EHT98778.1 223 HIIVMYAGQVVESGKASDIFKAPrHPYTQALLRALPEFA 261
                      567888899************8879**********9986 PP

>> Herpes_ori_bp  Origin of replication binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00011      0.22     183     214 ..     181     212 ..     167     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
  Herpes_ori_bp 183 viAmDAtvnaqlvdllaalrgdenihvivsey 214
                      A+D t++aq+++ll  l+ +en+++i  ++
     EHT98778.1 181 TTALDVTIQAQIIELLLDLQKQENMALILITH 212
                    579***********************998776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00019      0.38     321     411 ..     152     227 ..     138     255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEE CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilm 411
                 ++ SG +sq + i+ a+  + kll+ DE t+A    i+ + ++ l+  +k               + ++ +il++  +    + A+++i+m
  EHT98778.1 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLDLQK---------------QENMALILITHDLALVAEAAHHIIVM 227
                 567*****************************999996666666654444...............44444444444444444444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.39      19      37 ..      30      48 ..      20      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
      AAA_29 19 idlkg.atlltGpsGsGKST 37
                ++ +g ++ ++G+sGsGKS 
  EHT98778.1 30 VE-QGqVVGIVGESGSGKSV 48
                44.345888*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2534.33
//
Query:       EHT98779.1  [L=340]
Description: ATP-binding component of an ABC superfamily dipeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-32  111.6   0.0    5.7e-32  111.1   0.0    1.2  1  ABC_tran      ABC transporter
    2.6e-18   66.3   0.4    5.4e-18   65.3   0.4    1.6  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
     0.0012   18.3   0.0     0.0019   17.7   0.0    1.3  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0014   19.1   0.0     0.0025   18.2   0.0    1.6  2  AAA_16        AAA ATPase domain
     0.0014   18.9   1.1     0.0065   16.7   1.1    2.0  1  AAA_22        AAA domain
     0.0079   16.1   0.0      0.016   15.1   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.049   13.4   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.028   14.3   0.0        6.2    6.5   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
       0.06   13.1   0.0       0.12   12.1   0.0    1.5  1  IstB_IS21     IstB-like ATP binding protein
      0.079   13.4   0.0       0.19   12.1   0.0    1.7  1  RNA_helicase  RNA helicase
       0.13   12.8   0.0        0.2   12.1   0.0    1.3  1  AAA_23        AAA domain
       0.15   11.4   0.1          1    8.7   0.0    2.0  2  ATPase        KaiC
       0.25   10.7   1.2         28    4.0   0.0    2.8  3  TniB          Bacterial TniB protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   4.2e-35   5.7e-32       1     136 [.      37     188 ..      37     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 4.2e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...........esde 83 
                 l+ vs++l++g+++a+vGe+G+GKStL +ll+  ++pteG++ + g+dl +   q  +  r++i++++q+   +l+p+++v +            ++ e
  EHT98779.1  37 LDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIETPTEGQLYWHGQDLLKhdpQAQKLRRQKIQIVFQNpyGSLNPRKKVSQIleepliintslTKAE 135
                 789*********************************************9998999999************88899**9999888999********7788 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + ek l+ +  ++lk+++ ++ p+ +SgGq+qr+a+ar l+ +p++l++DEp 
  EHT98779.1 136 RREKTLEMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVLIADEPV 188
                 8888888888888888999999******************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.4   3.9e-21   5.4e-18       1      65 []     240     305 ..     240     305 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 3.9e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+g+++++f +p+HPYT+aLl+++prl++ ++ +  k+ ge ps+ + + GC F+ RC+ +   C
  EHT98779.1 240 VEKGSKEAIFAHPRHPYTQALLSATPRLNPDDRrERIKLTGELPSPLNPPPGCAFNARCRRRFGTC 305
                 8********************************99999**********************999988 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0019      26     204 ..      49     226 ..      34     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevs 124
                   a+vG+ G+GKs l   +   + e+ ++     + +dl+++  + +++ + +++i+f+n+  +l+ +k+  +i  +    ++s  k +++e t + ++
  EHT98779.1  49 TLAVVGESGCGKSTLGRLLT--MIETPTEGQLYWHGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVSQILEEPLIINTSLTKAERREKTLEMMA 145
                 458************99884..444444444456678899888999******************88888888888888877887777776666664444 PP

                 HH...HHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC CS
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
       SMC_N 125 el...lesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlek 204
                 ++    e+ + +++++SgG+++ +a+a      + +p  l + De  +aLD + +++v +l+   +++    ++ is++  + e+
  EHT98779.1 146 KVglkTEHYDRYPHMFSGGQRQRIAIARG---LMLDPDVL-IADEPVSALDVSVRAQVLNLMMDLQQDmgLSYVFISHDLSVAEH 226
                 43201333344566*********999976...57788866.67************999999997777633456677776666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-06    0.0025       2      88 ..      27     106 ..      26     210 .. 0.71
   2 ?   -2.5   0.0       4.3     6e+03      56      96 ..     235     271 ..     222     309 .. 0.50

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.ipysalaqalareellrqllde 88 
                 l+G e+ +++L  +  ++ +g    + ++GesG+GKs+l r l   +e+     ++g+   ++++ +  ++ aq l r++ ++ + ++
  EHT98779.1  27 LFGQERLVKALDGVSFNLERG--KTLAVVGESGCGKSTLGRLLT-MIETP----TEGQLYWHGQDlLKHDPQAQKL-RRQKIQIVFQN 106
                 567777777776665566666..7899************98887.55555....2333222222212335566666.55666666655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.3
      AAA_16  56 lrgkcdqlesaipysalaqalareellrqlldeaesaelea 96 
                   g+c++ +s+      + a  r+ + ++ll+++   ++++
  EHT98779.1 235 YLGRCVEKGSK----EAIFAHPRHPYTQALLSATPRLNPDD 271
                 55666665333....13334434344444444433333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.1   4.7e-06    0.0065       5      38 ..      47      95 ..      44     222 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.7e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee...............e 38
                 + l+v+GesG+GK+tl r l++  +  + + +                
  EHT98779.1 47 GKTLAVVGESGCGKSTLGRLLTMIETPTEGQLYwhgqdllkhdpqaqkL 95
                56799****************9987544444337666666666666552 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.016      89     120 ..      36      68 ..      18      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinall 120
                  +l+ ++ +l+  kt ++vG+SG GKStL   l+
   EHT98779.1  36 ALDGVSFNLERgKTLAVVGESGCGKSTLGRLLT 68 
                  567777888877***************977665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.6e-05     0.049      13      38 ..      38      63 ..      35      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTl 38
                dg ++++++  +  ++G+sG GKSTl
  EHT98779.1 38 DGVSFNLERGKTLAVVGESGCGKSTL 63
                67788888555999***********8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0092        13       3      22 ..      51      70 ..      50      78 .. 0.89
   2 ?    6.5   0.0    0.0045       6.2     231     301 ..     155     223 ..      97     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0092
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +++G  g+GKS+L ++l ++
  EHT98779.1 51 AVVGESGCGKSTLGRLLTMI 70
                689************99776 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0045
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpll 301
                 ++ ++ +S G+++ +a++  l  ++   ++l+ DEp + L+ ++ + +l l+ +l++  g   ++ +H+ ++
  EHT98779.1 155 DRYPHMFSGGQRQRIAIARGLMLDP---DVLIADEPVSALDVSVRAQVLNLMMDLQQdMGLSYVFISHDLSV 223
                 4556677999999877777777777...9********************99977776688899999998765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.4e-05      0.12      31      74 ..      30      74 ..       6     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.4e-05
   IstB_IS21 31 dkrkvkeLatlsf.iekkenivllGpsGvGKshlaialgveavra 74
                ++r vk+L + sf +e+ + ++++G sG GKs l   l +    +
  EHT98779.1 30 QERLVKALDGVSFnLERGKTLAVVGESGCGKSTLGRLLTMIETPT 74
                57999*******978999**************9988777655554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.19       3      39 ..      52      83 ..      50     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
  RNA_helicase  3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnp 39
                  ++G+sg+GKStl +      l+ +++++++++y+++ 
    EHT98779.1 52 VVGESGCGKSTLGRL-----LTMIETPTEGQLYWHGQ 83
                  89**********999.....66778899999998665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015       0.2      11      87 ..      38     118 ..      34     168 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      AAA_23  11 rdqeidFskglt.lItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry......t 87 
                 +++++++++g t +++G+ G+GK+T+ + ++ + +   ++l   +g+++ k+d+  ++    ++ +++ f+n  g         
  EHT98779.1  38 DGVSFNLERGKTlAVVGESGCGKSTLGRLLTMIETPTEGQL-YWHGQDLLKHDPQAQK--LRRQKIQIVFQNPYGSLnprkkvS 118
                 667788877544279***********999999988744333.3347888888887544..233448888877666545544441 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00074         1      16      36 ..      44      64 ..      32      71 .. 0.85
   2 ?   -0.0   0.0      0.34   4.6e+02     139     170 ..     194     226 ..     187     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00074
      ATPase 16 ipegrvvlitGepGtGKtifa 36
                + +g++  ++Ge+G+GK++++
  EHT98779.1 44 LERGKTLAVVGESGCGKSTLG 64
                77999**************98 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.34
      ATPase 139 vaReilrqlvrvl.kklgvTailvsekssseea 170
                  +R+++ +l++ l +++g+  +++s   s +e+
  EHT98779.1 194 SVRAQVLNLMMDLqQDMGLSYVFISHDLSVAEH 226
                 68999*****99999999999999985554444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.02        28      33      51 ..      45      63 ..      31      77 .. 0.85
   2 ?    0.1   0.1      0.32   4.4e+02      64     139 ..      94     168 ..      84     175 .. 0.67
   3 ?    3.4   0.1     0.031        43     119     160 ..     178     217 ..     175     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.02
        TniB 33 krmpnlllvGdsnnGKtmi 51
                +r + l +vG+s +GK+++
  EHT98779.1 45 ERGKTLAVVGESGCGKSTL 63
                566799***********98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
        TniB  64 dedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsarkq 139
                 + +++k++++  +   + + ++  ++iLe+    ++++ + ++ ++++l+++ +++++    D   ++ +g +r++
  EHT98779.1  94 KLRRQKIQIVFQNPYGSLNPRKKVSQILEEPLI-INTSLTKAERREKTLEMMAKVGLKTEHYDRYPHMFSGGQRQR 168
                 455555555554444455555556667766444.356777888899999999999999888888888888887776 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.031
        TniB 119 kvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 ++ vLi DE  ++l  s   + ++ln++  L++++ ++ v +
  EHT98779.1 178 DPDVLIADEPVSALDVS--VRAQVLNLMMDLQQDMGLSYVFI 217
                 6789*****99999555..56679***********9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2719.60
//
Query:       EHT98780.1  [L=192]
Description: hypothetical protein CKS_4394 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-28   98.1   6.3    8.3e-28   97.9   6.3    1.0  1  CBP_BcsO  Cellulose biosynthesis protein BcsO


Domain annotation for each model (and alignments):
>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   6.3   4.6e-32   8.3e-28       1     201 []       1     192 []       1     192 [] 0.78

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 4.6e-32
    CBP_BcsO   1 mkkyddvqrfkdkvqikdidfkdlsgdvl.aselvvWPivkqllrnqtgddtlsaassvdiaqPvPvsatvlsapasprrvlPssslnvnadqsraaqi 98 
                 mk+ydd+qrfk+k++  di f+d+sg+   a e  +W +++ql+  +  +  +s+ + +d  qP P+   ++s       ++ s+  + +a    a+  
  EHT98780.1   1 MKNYDDLQRFKEKTKTLDIAFQDMSGQSQeAAEKSKWSLIRQLAS-DDQQMPFSGGQRIDLPQPQPIQGDEFSL-DMGSALTQSAQVSTPA---SASSR 94 
                 9*************************976267889*********9.5566789********************9.5556677777666655...56678 PP

    CBP_BcsO  99 slfnallaslasaesvsiiaPvtiasrePvsapqpaa..ltietvppatvrphplasaaavseasaaseasrfkklfskktedeiasvskttllkPlle 195
                 sl+n+l as +  +  + +a  + +s  P s   p a     +t  p t+       a+++  a   +e +rf  lf    +  +++  k+tllkPlle
  EHT98780.1  95 SLINSLSASEPLPDVTE-PASHASSSLFPTSSATPQAgvAVQKTHAPVTAP----DTAPSIP-ARPEAENGRFSDLFR-ARNSASENLPKETLLKPLLE 186
                 9999******9998654.666666666777765554410444555555544....3444444.5557899*******5.567899************** PP

    CBP_BcsO 196 kialCr 201
                 kialCr
  EHT98780.1 187 KIALCR 192
                 *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1387.69
//
Query:       EHT98781.1  [L=267]
Description: putative cellulose synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-40  137.1   0.0    8.8e-40  136.6   0.0    1.1  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    1.3e-19   70.5   0.0    2.8e-19   69.4   0.0    1.7  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    4.6e-14   52.7   0.0    7.3e-14   52.1   0.0    1.3  1  AAA_31       AAA domain
    8.8e-12   45.0   0.3    1.5e-08   34.4   0.0    2.6  2  ParA         NUBPL iron-transfer P-loop NTPase
      9e-06   25.1   0.0    1.3e-05   24.5   0.0    1.2  1  ArsA_ATPase  Anion-transporting ATPase
      1e-05   25.1   0.0     0.0085   15.6   0.0    2.1  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    2.1e-05   24.9   0.1     0.0052   17.2   0.0    2.2  2  AAA_16       AAA ATPase domain
    4.6e-05   22.8   0.0    7.9e-05   22.1   0.0    1.4  1  MipZ         ATPase MipZ
     0.0065   15.8   0.0      0.011   15.1   0.0    1.3  1  VirC1        VirC1 protein
     0.0091   15.8   0.0      0.016   15.0   0.0    1.4  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
  ------ inclusion threshold ------
      0.016   14.8   0.1       0.13   11.8   0.1    2.0  2  AAA_25       AAA domain
       0.09   12.4   0.0       0.17   11.5   0.0    1.3  1  SRP54        SRP54-type protein, GTPase domain
        0.2   11.4   0.0       0.33   10.6   0.0    1.3  1  AAA_24       AAA domain


Domain annotation for each model (and alignments):
>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.0   6.4e-43   8.8e-40       1     230 [.       1     242 [.       1     245 [. 0.90

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 6.4e-43
    CBP_BcsQ   1 mkvlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaaleyapgldllPfGelnveekenlqq.l 98 
                 m+++++   +GGvG+t+l+a Law+l + g +vl+iD+ ++n LrlhF v++++ +g+++   ++a+w+q++l    ++ +lP+G+++++++e+ ++ l
  EHT98781.1   1 MPLVCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQNALRLHFGVPLNDGRGFVARSEEQADWSQSILTTGGNIFVLPYGNVTEAQRERFEEnL 99 
                 889999999*************************************************************************************99878 PP

    CBP_BcsQ  99 aekaeallaalkelkeqyrwi.llDlpagasaltrellaladlvllvvepdanc.....hv...rLhqqalp..aaellLiNqfeaasqlqqDllqlWl 186
                 +++++ l++ l++l +   ++ + D p g+ +  ++++alad++l v+ +d+++     h+   rL  q+l+  + +++++Nq +   ++++D+  + +
  EHT98781.1 100 TKDPHFLKRGLDTLLNYPGLVmVADFPPGPGPALKAIRALADMHLVVMLADTASvsllpHIeenRLIGQPLNsrHGHYFILNQCDNRRNINRDVTAFLQ 198
                 99999999*****99666655157*****************************9333333222244456665225689********************* PP

    CBP_BcsQ 187 qslrrllPlvihrDealaEalaakqPlgeyrpdslaaeevktLa 230
                 q l + l   ihrDe++ Ea a++q ++++ p s+aa +++ + 
  EHT98781.1 199 QRLGDTLLGQIHRDESVGEANASQQSVYDFSPASAAAFDIELIT 242
                 ***999999****************************9998765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0     2e-22   2.8e-19       1     128 []       4     225 ..       4     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 2e-22
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ++++s kGGvGKTtlaanLa +lar g +Vl++D+D+q  +  ++    nd +                                              
  EHT98781.1   4 VCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQNALRLHFGVPLNDGRGfvarseeqadwsqsilttggnifvlpygnvteaqrerfeenltkd 102
                 689***********************************6666654444444444666688999************************************ PP

                 ..................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS...-TTCHHHHHHHHH CS
                 ..................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..................................................dlkrllellealgkkkall.lkiagvvlnrvdgeneetllkealeelkq 102
                                                                   +++ l  + e+  ++++l+    + ++ln  d++++++  ++  + l+q
  EHT98781.1 103 phflkrgldtllnypglvmvadfppgpgpalkairaladmhlvvmladtaSVSLLPHIEENRLIGQPLNsRHGHYFILNQCDNRRNIN--RDVTAFLQQ 199
                 **************************************9999999998875555555556666666666889999*********5555..555555667 PP

                 HCTS-EEEEEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 103 rygvpvlgviprdeavaeapargepv 128
                 r+g+ +lg i+rde+v ea a++++v
  EHT98781.1 200 RLGDTLLGQIHRDESVGEANASQQSV 225
                 88*****************9998875 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   5.3e-17   7.3e-14       3     154 ..       3     154 ..       1     165 [. 0.76

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 5.3e-17
      AAA_31   3 vIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvele 101
                  +++   KGGvGKTT + nla +la++g kvL +D+D Q+++  ++g+  n+    + +   e+++ ++ i  t+  n+ ++p      +   ++ e  
  EHT98781.1   3 LVCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQNALRLHFGVPLNDGRGFVARS-EEQADWSQSIL-TTGGNIFVLPYGNVTEAQRERFEENL 99 
                 5789999*****************************************999977777766.58888888888.45578888885444333344444444 PP

      AAA_31 102 kk.eeilkellekvkdeYDyiii.DcpPsLglltenaLvasdsviipvqaeayal 154
                 +k  + lk+ l+++ +   ++++ D pP  g  ++ + + +d+ ++++ a+  ++
  EHT98781.1 100 TKdPHFLKRGLDTLLNYPGLVMVaDFPPGPGPALKAIRALADMHLVVMLADTASV 154
                 4415557999998888777765448898888888888888888888877766555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   1.1e-11   1.5e-08       6      42 ..       4      40 ..       2      44 .. 0.95
   2 !    7.7   0.1    0.0015       2.1     115     245 ..     121     245 ..     114     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.1e-11
        ParA  6 iavlSgKGGVGKStvavnlAlaLakkglkvgllDaDi 42
                ++v+S KGGVGK+t+a+nlA++La++g kv  +D D+
  EHT98781.1  4 VCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDV 40
                78**********************************8 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0015
        ParA 115 LiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggeklaeelgvpllgeipldp 213
                 ++ D+PPG g +  ++    +++ +v+ +   +v+l     + +++ +   +  G     ++f+ ++c+++ +i +++ ++ l+++lg +llg+i  d+
  EHT98781.1 121 MVADFPPGPGPALKAIRALADMHLVVMLADTASVSLLPHIEENRLIGQPLNSRHG-----HYFILNQCDNRRNI-NRDVTAFLQQRLGDTLLGQIHRDE 213
                 6667777777655555555566666666666666666665555555555444444.....79999*****9988.567788999*************** PP

        ParA 214 eireasdegkplvlkepeseaakaleeiaekv 245
                 ++ ea+ ++++++  +p s+aa  +e i+++v
  EHT98781.1 214 SVGEANASQQSVYDFSPASAAAFDIELITKRV 245
                 ***********999999999998888888776 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   9.7e-09   1.3e-05       6      43 ..       7      44 ..       3      57 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 9.7e-09
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHH CS
  ArsA_ATPase  6 vgGKGGVGKttvsaatavklsekgkkvllistDPAhsl 43
                  + KGGVGKtt++a +a  l+++g kvl i  D    l
   EHT98781.1  7 CSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQNAL 44
                 578**************************998866655 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.2e-06    0.0085       7      37 ..       9      39 ..       4      51 .. 0.89
   2 !    7.5   0.0    0.0018       2.5     187     246 ..     188     247 ..     177     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.2e-06
   Fer4_NifH  7 GkGGiGksttsqnlsaalaemgkkvlivGCD 37
                 kGG+Gk+t ++nl+ +la+ g kvl +  D
  EHT98781.1  9 PKGGVGKTTLAANLAWSLARSGSKVLAIDFD 39
                59************************99877 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
   Fer4_NifH 187 ddereliekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkile 246
                 + +r++   + ++lg  +l  + rde v +a++ ++ v +++p s  a   + + +++++
  EHT98781.1 188 NINRDVTAFLQQRLGDTLLGQIHRDESVGEANASQQSVYDFSPASAAAFDIELITKRVAS 247
                 3456677778899******************************99988777777777765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.8e-06    0.0052      26     125 ..       4     101 ..       1     159 [. 0.83
   2 !    6.2   0.0     0.009        12      51      99 ..     168     223 ..     151     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.8e-06
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.....avpelagaeasrl 119
                 ++++s   GvGK++l+  l+ +l ++g  +l+ ++d           +++ +   l    +  a+s e+++w++ ++++ +     + ++++ a+++r+
  EHT98781.1   4 VCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQ-------NALRLHFGVPLNDGRGFVARSEEQADWSQSILTTGGnifvlPYGNVTEAQRERF 95 
                 56677779*****************************9.......34444446666666666699999********99999999998888888888888 PP

      AAA_16 120 lellkr 125
                  e l++
  EHT98781.1  96 EENLTK 101
                 887775 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.009
      AAA_16  51 d......ggiflrgkcdqlesaipy..salaqalareellrqlldeaesaeleawre 99 
                 +      g +f+  +cd   ++i +   a++q+   ++ll q++++++  e++a ++
  EHT98781.1 168 QplnsrhGHYFILNQCDNR-RNINRdvTAFLQQRLGDTLLGQIHRDESVGEANASQQ 223
                 04444446889******99.666665355999999***********66666665555 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.7e-08   7.9e-05       3      41 ..       4      42 ..       2      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.7e-08
                EEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT CS
        MipZ  3 ivlgnekGGsGksttavhvavaLlkkGarvaaidldlrq 41
                + +   kGG Gk+t a  +a +L+++G +v aid+d++ 
  EHT98781.1  4 VCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQN 42
                677889******************************965 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.9e-06     0.011       1      39 [.       1      39 [.       1      47 [. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.9e-06
       VirC1  1 mklitfcslkGGaGkttalmglcsalasdgkrvalfead 39
                m l+ +cs kGG Gktt    l  +la  g +v   + d
  EHT98781.1  1 MPLVCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFD 39
                789***************99**********999777766 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.016       4      33 ..      12      41 ..      10      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDvG 33
                 +GK+Tla++L+  ++r+g k++ +D Dv 
  EHT98781.1 12 GVGKTTLAANLAWSLARSGSKVLAIDFDVQ 41
                59**************************96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.5e-05      0.13      41      65 ..      10      35 ..       4      51 .. 0.82
   2 ?    0.6   0.0      0.26   3.6e+02      63      97 ..     165     200 ..     144     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
      AAA_25 41 apgtGKttlaldlalava.tGkpwlg 65
                 +g+GKttla +la ++a +G+++l 
  EHT98781.1 10 KGGVGKTTLAANLAWSLArSGSKVLA 35
                68****************88887665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.26
      AAA_25  63 wlg.pvapeqgkVlyvsaEdsedelrrRlravgeal 97 
                 + g p+ +++g   +++ +d++ +++r + a ++++
  EHT98781.1 165 LIGqPLNSRHGHYFILNQCDNRRNINRDVTAFLQQR 200
                 556788889999999999999999999999988875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.17      11      39 ..      12      40 ..       3      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                TSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54 11 GaGKTttlaKLaallkkegkkvllvaaDt 39
                G+GKTt +a La  l ++g kvl +  D+
  EHT98781.1 12 GVGKTTLAANLAWSLARSGSKVLAIDFDV 40
                8*********************9988876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.33       6      32 ..       6      39 ..       1      49 [. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
      AAA_24  6 liyGpsgiGKTtlakel.......gpkplfidte 32
                ++  + g+GKTtla++l       g k+l id++
  EHT98781.1  6 VCSPKGGVGKTTLAANLawslarsGSKVLAIDFD 39
                5555789*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2081.42
//
Query:       EHT98782.1  [L=702]
Description: cellulose synthase catalytic subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-36  126.3   0.0    1.7e-36  125.6   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
      4e-24   85.8   0.0    5.9e-24   85.2   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    9.8e-21   74.6   0.3    9.8e-21   74.6   0.3    1.9  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.2e-16   60.7   0.0    1.9e-16   60.0   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
      1e-13   50.8   6.6    7.6e-10   37.9   1.6    3.1  3  Cellulose_synt   Cellulose synthase
    0.00074   19.8   0.0     0.0015   18.9   0.0    1.5  1  PilZ             PilZ domain


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   5.7e-40   1.7e-36       1     170 []     130     301 ..     130     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 5.7e-40
                      EEEEEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaq.dpypdfeiivvDDgStDetveileelakedprvrvirreenv.GkagalnaglraatgdyilflDaDde 91 
                      +v iptyNe  + ++ t+ ++  + +p+++++++++DDg + e + ++ +      +v +i+r+ n  +kag+ln++++ ++g++i+++D D++
       EHT98782.1 130 DVYIPTYNEsLDVVRDTVLAAQCIdYPRDKIKVYLLDDGKRREFAVFAADV-----GVGYITRDDNShAKAGNLNHAMKITKGELICVFDCDHV 218
                      699***************95544499*************************.....9************************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.....EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHCH CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.....generlyfkerkrslkgnlsfeigsaallrrealeell 170
                       ++ +l+ +v+++ k +++++l q+p++f+++d++ern+r      +e   +y++ +++++++n++f++gs+a++rr+alee++
       EHT98782.1 219 ATRTFLQATVGPFLK-DPKLALLQTPHYFYSPDPFERNLRAarsipNEGALFYGPVQQGNDNWNATFFCGSCAVIRRSALEEIG 301
                      ***************.888**************************************************************985 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0     2e-27   5.9e-24       2     230 .]     128     354 ..     127     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 2e-27
  Glyco_tranf_2_3   2 rdlavlVptfneed.vlgevlesllaqeypr..vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvl 92 
                      + + v +pt+ne+  v+++++ ++  ++ypr  ++v++ +d++++e + +a        dv+v ++++++   s +k+ +ln+a++++k++l+ 
       EHT98782.1 128 T-VDVYIPTYNESLdVVRDTVLAAQCIDYPRdkIKVYLLDDGKRREFAVFAA-------DVGVGYITRDD--NSHAKAGNLNHAMKITKGELIC 211
                      4.7799******874666688888878887767*************888775.......68999*98877..578******************* PP

  Glyco_tranf_2_3  93 lvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrs....tlvsal..galefaerhlrflaarralgvltlnGsgslirrevlkelegld 179
                      ++D D v   ++l++++  f ++pk + ++tp +++ ++    +l +a    + e a  +  + +  +  +++++ Gs+ +irr+ l+e++g+ 
       EHT98782.1 212 VFDCDHVATRTFLQATVGPFlKDPKLALLQTPHYFYSPDpferNLRAARsiPN-EGALFYGPVQQGNDNWNATFFCGSCAVIRRSALEEIGGFA 304
                      ********************9************99754434433333332233.66677777788888889*********************** PP

  Glyco_tranf_2_3 180 plflltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvyg 230
                          +t+D++++l + r+g+ +a+++ ++   + ++ l   + qr+Rw++g
       EHT98782.1 305 V-ETVTEDAHTALKMQRRGWGSAFLAIPLAAGLATERLGLHVIQRTRWARG 354
                      *.**********************************************986 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   1.0       3.6   1.1e+04     169     169 ..      70      70 ..      28     109 .. 0.44
   2 !   74.6   0.3   3.3e-24   9.8e-21       2     186 ..     210     421 ..     209     430 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.6
  Glyco_trans_2_3 169 l 169
                      +
       EHT98782.1  70 W 70 
                      1 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 3.3e-24
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaa.elaspevaivqgpvlvmnvanwleelaalff..aedhgkdilvrealgr..vvpsvGsgaflrrsalqevggw 90 
                      i + D+D v ++ +l  ++  +l++p+ a++q+p +++   ++ ++l a++   +e  ++ ++v++++ +   +++ Gs+a++rrsal+e+gg+
       EHT98782.1 210 ICVFDCDHVATRTFLQATVGpFLKDPKLALLQTPHYFYSPDPFERNLRAARSipNEGALFYGPVQQGNDNwnATFFCGSCAVIRRSALEEIGGF 303
                      7899**************987899*************9889999999999956799999999999988876689999***************** PP

  Glyco_trans_2_3  91 dgdessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc...eleklil...........lvrllgylgsllwsalplh 170
                          ++v+ED + +l++qr+G+   f + +l       +l  ++ Qr+Rwa+G          +           ++++l yl   l++ + l 
       EHT98782.1 304 A--VETVTEDAHTALKMQRRGWGSAFLAIPLAAGLATERLGLHVIQRTRWARGMtqiF-----RvdnpllgrglkWQQRLCYLNAMLHFQFGLP 390
                      *..***************************999999999**************75330.....2444444455557888888877777666655 PP

  Glyco_trans_2_3 171 lallllfslla...............lalvl 186
                       +++l+++l++               +a+vl
       EHT98782.1 391 RVIFLTAPLAYllfnlniihssasliFAYVL 421
                      5555555555533333335555554444444 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   6.4e-20   1.9e-16      16     173 .]     192     353 ..     182     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 6.4e-20
  Glyco_transf_21  16 npKvnnllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl.....ntlagvlqa..klsglgfa 101
                        K  nl++a++  k +l+++ D+d+++++++L+  ++++ + pk +l++ +++ + ++ + ++l aa       + ++g +q   +   + f 
       EHT98782.1 192 HAKAGNLNHAMKITKGELICVFDCDHVATRTFLQATVGPFLKdPKLALLQTPHYFYSPDPFERNLRAARSipnegALFYGPVQQgnDNWNATFF 285
                      579************************************8755**********************88886564433446666665533488*** PP

  Glyco_transf_21 102 vGksmalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWar 173
                      +G++ ++rr+aLe+iGGf+   +++ eD+ ++  ++++G+  ++  +p+a   + +   l   + + +rWar
       EHT98782.1 286 CGSCAVIRRSALEEIGGFAV--ETVTEDAHTALKMQRRGWGSAFLAIPLAAGLATE--RLGLHVIQRTRWAR 353
                      *******************9..**************************99877764..44545555578886 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1     8e-05      0.24      15      44 ..     140     169 ..     129     179 .. 0.82
   2 !    4.5   0.0    0.0034        10     182     288 ..     192     297 ..     182     306 .. 0.73
   3 !   37.9   1.6   2.5e-13   7.6e-10     416     651 ..     302     516 ..     298     547 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8e-05
  Cellulose_synt  15 plvtantvlsilavdypvekvscyvsddGa 44 
                       v  +tvl+  ++dyp +k+ +y+ ddG 
      EHT98782.1 140 LDVVRDTVLAAQCIDYPRDKIKVYLLDDGK 169
                     447889**********************96 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0034
  Cellulose_synt 182 nkkaGamnalvrvsavlsnapfilnldcdhyinnskalreamcflldrelG..kkvcyvqfpqrfdGidksdr.yanrnvvffdinlraldGiqG 273
                     + kaG +n  ++    ++ +  i  +dcdh    +        fl d++l   +   y   p+ f+   +  r   n+  +f+    ++ d  + 
      EHT98782.1 192 HAKAGNLNHAMK----ITKGELICVFDCDHVATRTFLQATVGPFLKDPKLAllQTPHYFYSPDPFERNLRAARsIPNEGALFYGPVQQGNDNWNA 282
                     667777776555....689***********876655444455799999843223444555555555444444424588899999999******** PP

  Cellulose_synt 274 pvyvGtGcvfrrqal 288
                       + G+ +v+rr+al
      EHT98782.1 283 TFFCGSCAVIRRSAL 297
                     *************98 PP

  == domain 3  score: 37.9 bits;  conditional E-value: 2.5e-13
  Cellulose_synt 416 GwiyGsvtedvltGfkmharGwrsvycvtkrdafkGsapinlsdrlhqvlrwalGsveiffsrnnalfagykkklkllerlaylnviiypftsif 510
                     G+   +vted  t  km  rGw s +     +a  G a   l   + q  rwa G  +if   +n+l+    + lk+ +rl+yln++++    ++
      EHT98782.1 302 GFAVETVTEDAHTALKMQRRGWGSAFLAIPLAA--GLATERLGLHVIQRTRWARGMTQIFRV-DNPLLG---RGLKWQQRLCYLNAMLHFQFGLP 390
                     456679******************998877766..788888888999**********99865.567654...58****************9**** PP

  Cellulose_synt 511 llvycilpalsllsgkfivkelsnlasiyll.llflslivlavlelkwsGvsleewwrneqfwvigGvsahlfavlqGllkvlaGvdisftvtsk 604
                      +++ + p   ll +  i+++  +l+  y+l  l+lsl v + ++ +         +r   +  i  +      v+  +l +l   + +f vt k
      EHT98782.1 391 RVIFLTAPLAYLLFNLNIIHSSASLIFAYVLpHLVLSLSVNSRMNGR---------FRYTFWGEIYETVMCFHLVIPTILTLLSPKHGKFNVTDK 476
                     ********888887777776655555555442677777776644433.........444333345566666667899999999999999999999 PP

  Cellulose_synt 605 asddeddefadlyivkwttllippltllivnlvavvvgvsrainsay 651
                     ++   d+ f d++iv+      p + + ++  +++v+g++ra ++ y
      EHT98782.1 477 GGV-LDQGFFDFHIVR------PHVIVALLLSIGIVAGIVRATMHDY 516
                     998.788999999887......4444556666788888888776665 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.9e-07    0.0015       1     100 [.     550     643 ..     550     646 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.9e-07
                 CSSSS-C..EEECEEEEEEETTEEEEEEE.EEEESSEEEEEES..T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTEEEEEEEEEECHHHHHH CS
        PilZ   1 qrRkekRlevpvsipvtleadegelkgrl.iDiSlgGlairlp..deelalgdrvelklpldkdqelslpgrVvrvkpeedgerlGveFldldeeqrel 96 
                 q Rk  R  ++v+ip+ ++ + g  + ++  D+S gG+ +++p  ++e ++ ++++l l+   ++++++p+  +  ++e     + + F  ++   r++
  EHT98782.1 550 QVRKTIR--IEVQIPAIIHYASGISSRTMtSDLSMGGAHLDAPdnRHEHDTIEEIDLLLK---SGTITIPASKISGDEE----SIRLSFGAMPLSRRRE 639
                 78999**..***************777777*************55555555555555555...8888888877777777....6777777777777777 PP

                 HHHH CS
        PilZ  97 lirl 100
                 l+r 
  EHT98782.1 640 LVRV 643
                 7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 5340.66
//
Query:       EHT98783.1  [L=990]
Description: cyclic di-GMP binding protein precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-197  657.6   3.4   2.2e-197  657.2   3.4    1.1  1  BcsB      Bacterial cellulose synthase subunit


Domain annotation for each model (and alignments):
>> BcsB  Bacterial cellulose synthase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.2   3.4  1.2e-201  2.2e-197       4     605 ..     276     883 ..     274     884 .. 0.98

  Alignments for each domain:
  == domain 1  score: 657.2 bits;  conditional E-value: 1.2e-201
        BcsB   4 etlsfadlgvpgdltLrGvddegglsfglradqvvtnasLsLaytvSpaLlaelshLkvllNgellgtlplekedagkeevsldipprlltdfNrlrle 102
                 +tls+a++g+++++tL+G + ++g+ f+l+ d+vvtna+L+L+++vS+aL+a++++L+++lNg++lgtlpl ++d+++ +++ldip+++++++N+l+++
  EHT98783.1 276 STLSVAQMGQRQGITLTGGQLQSGILFTLPGDEVVTNARLNLSLRVSQALAARNTSLQLMLNGQPLGTLPLGSGDSDESDYQLDIPAAMIVSNNNLSFK 374
                 689************************************************************************************************ PP

        BcsB 103 lighytedCedpassslwaeIspdStLeltgqklelkndLsllpapffdkrdserlelpivfpaapdpatlqaAgivAswfGaladyrgadfpvstdql 201
                 +++ +++ Ce+++ ++++++I p++ L+l+gq+l+++++L+++p+pf+d++ ++++ +++ f ++++p+t++aA +vAsw+G+++dyrg++fpv++++l
  EHT98783.1 375 INDADKLLCEKDSAEQYQVTILPKTMLSLEGQQLNIGTSLRNFPRPFIDPQRMTAADVTFAFTNSVSPDTVTAAVLVASWLGIQSDYRGISFPVVRGTL 473
                 *************************************************************************************************** PP

        BcsB 202 PeegnavvfatndekpagldlPevegptlavidnPsdpegklLlvtGrddaelrkAakaLalgsallsgdtvsvdavkelpprkpydAPrwvptdrpvr 300
                 Pe +n+++f+++++k++ l++P+ +gptl+++dnP +p +klLlv+G+d+++lr+Aa++L++++ +++g+ ++v + + ++ r+pydAPrw++t +pvr
  EHT98783.1 474 PE-KNGILFGHPGDKIGTLTFPASSGPTLQMVDNPGNPVYKLLLVSGADENQLRQAANRLTTQPLTTDGSMLQV-KPQSIASRSPYDAPRWINTLHPVR 570
                 **.***********************************************************************.************************ PP

        BcsB 301 LseLgaeseelqvrGlrpdpislnfrlPpDlflwrgegiplqlryrytaasred.rtSrlsvslNgqfigslpLssetgeekkl..lgldasqeqlevt 396
                 L++L +++++l++ G+++d++++nfr++pDlflw+g+++pl+l+yr+++++++d ++S l+v lNg+f+++l++++e+ +e+ +  lg+da+qe+++++
  EHT98783.1 571 LGQLLRKDQSLTATGIWHDAMRVNFRAAPDLFLWDGDTVPLHLHYRFPSETWIDeKNSLLNVTLNGTFLRNLTVNKEGLLESVWhrLGGDARQEHYQIN 669
                 *******************************************************9***************************98888*********** PP

        BcsB 397 lpasllksanqLqfefdlepkkdgeCeavapdnlraaIdpdStidlsgfahyaalPnLaafanaGFPFtrlADlseTavvlpdrptaaelsallnllgr 495
                 l+++l++++nqL ++f+++pk+d++C  + ++n++++I++dS+idls+++h+  lPnL++f++a+FPF+rlAD+s+T+++lp +p++ae+s+llnl +r
  EHT98783.1 670 LDPYLIYGDNQLALYFNIKPKADAPCGVLLNNNIKSRIEEDSWIDLSHTRHFSMLPNLSYFVGASFPFSRLADFSQTTLLLPGQPSDAEISTLLNLSAR 768
                 *************************************************************************************************** PP

        BcsB 496 mGaqtgypalrvtv.....adaadaesladkdlLvigslesqpllarlekslpllldqrrlelkdrseelkelksgrlrrddekadadislsssgplaa 589
                 +G++tg+ +++ +v     ++ ++++++++ dlL++++ +++++++++ +++p+  +++ l +k++++++k  ++   +  +++ dad+++ss++++++
  EHT98783.1 769 AGNATGVVLAQNQVlfglpNGGNNLARVQQTDLLAVSTTGNSAFNQAMLENSPYDANGSALGVKEPTTLEKLRSWLMGDWYRQPLDADRYFSSNESWRG 867
                 *****************9999999999******************************9999999999888655555555578***************** PP

        BcsB 590 lvgfesPfnsgrsvva 605
                 +++++s +n++r vv+
  EHT98783.1 868 FLSYRSTWNPDRLVVM 883
                 **************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6597.17
//
Query:       EHT98784.1  [L=1265]
Description: cellulose synthase operon protein C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-135  451.9  11.5   2.8e-135  450.8  11.5    1.6  1  BCSC_C          Cellulose synthase operon protein C C-terminu
    1.8e-20   73.2  79.9    3.2e-07   30.7   1.1   12.3 14  TPR_19          Tetratricopeptide repeat
    8.6e-12   44.8  70.3     0.0039   17.9   0.8   14.0 13  TPR_14          Tetratricopeptide repeat
      2e-10   40.3  22.7      0.077   13.4   0.0    8.8  8  TPR_17          Tetratricopeptide repeat
      2e-08   34.7  73.6    1.1e-05   26.0   3.8   11.7 11  TPR_16          Tetratricopeptide repeat
    1.3e-06   28.1  11.9        3.3    8.2   0.6    8.8  7  TPR_8           Tetratricopeptide repeat
    2.1e-06   27.9  16.1       0.25   11.6   0.6    8.0  7  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
    0.00059   19.8   0.5     0.0017   18.3   1.6   11.1 12  TPR_2           Tetratricopeptide repeat
     0.0035   17.6  58.3       0.09   13.1   0.2   10.6 11  TPR_20          Tetratricopeptide repeat
     0.0088   16.2   2.6      0.045   13.8   0.2    2.7  2  Opacity         Opacity family porin protein
     0.0094   15.7   1.5     0.0094   15.7   1.5    7.6  8  TPR_1           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.8  22.8      0.016   15.3  20.6    2.0  1  OMP_b-brl       Outer membrane protein beta-barrel domain
      0.033   14.7   0.0       0.27   11.8   0.0    2.4  2  EF-G-binding_N  Elongation factor G-binding protein, N-termin
      0.048   13.1   0.1       0.15   11.5   0.1    1.9  1  SPO22           Meiosis protein SPO22/ZIP4 like
      0.075   13.7   0.2      0.074   13.7   0.8   10.9 10  TPR_4           Tetratricopeptide repeat
       0.11   11.4   3.2       0.53    9.1   0.1    3.2  4  NARP1           NMDA receptor-regulated protein 1
        0.2   11.3  29.2        3.1    7.5   0.0    7.9  9  TPR_11          TPR repeat
       0.29   11.3  18.1       0.24   11.5   0.9    5.9  4  TPR_7           Tetratricopeptide repeat
       0.85    9.8  36.9      0.042   14.0   1.3    7.5  6  TPR_9           Tetratricopeptide repeat
       0.86    9.9  33.2       0.27   11.6   8.0    6.9  7  TPR_12          Tetratricopeptide repeat
        4.4    6.9  10.7        9.8    5.8   0.7    4.6  4  HrpB1_HrpK      Bacterial type III secretion protein (HrpB1_H
        5.7    7.1  11.6          2    8.6   0.1    4.7  4  Fis1_TPR_C      Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> BCSC_C  Cellulose synthase operon protein C C-terminus (BCSC_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.8  11.5  3.4e-138  2.8e-135       1     338 [.     912    1262 ..     912    1263 .. 0.99

  Alignments for each domain:
  == domain 1  score: 450.8 bits;  conditional E-value: 3.4e-138
      BCSC_C    1 sklteaeap.leasvpvkdgrlsvrvtpvsldaGtlaasgsanarfGtgalsqaesvaaa...........agsqkasGvelalglegdswkadiGt 85  
                  s+ltea+ap + ++vp++d+r+ +++tpvsl+aG+  a g+a++rfGt+al+q++ vaa+           ++sq+asGvel+l+l+gds+k+d+G+
  EHT98784.1  912 SQLTEAKAPlTFSTVPFGDARFDFTMTPVSLTAGS--AAGDAWRRFGTNALEQGKVVAANgakvddvptasTNSQTASGVELSLALKGDSYKVDLGS 1006
                  89*******99************************..99*****************9999************************************* PP

      BCSC_C   86 TPlGfdvsnvvGgvkwspklgdlg.ltltaeRravtdSlLSYaGarDpvtGkkWGgVtknggslslsyddgdagvyaelgaesltGenVasNtsvea 181 
                  TPlG+d++++vGgv+wspk++d+  l lt+eRra+tdSlLSY+G++D+ +Gk+WG+Vtkngg++ lsyd+gdag+y+++ga+s+ GenVasN++++a
  EHT98784.1 1007 TPLGQDLNTLVGGVQWSPKITDFLtLILTGERRAITDSLLSYVGTEDKSSGKRWGNVTKNGGNALLSYDNGDAGMYVGAGAYSYVGENVASNNNLQA 1103
                  ************************************************************************************************* PP

      BCSC_C  182 naGvylrlikeddrelkvGlnlsymdydknlsyftyGqGGYfSPqrYvsvslpveytqrydnwsyklsgsvgyqsykedksayfPtdpdlqaale.. 276 
                  naGvy+r+++ ddrelkvG++ls+md++knlsyf+yGqGGYfSPq+Y s+s+p+++t+++d+++++++g++gyqsy++dksayfP+dp+ qa+le  
  EHT98784.1 1104 NAGVYVRPFHADDRELKVGMSLSWMDFSKNLSYFSYGQGGYFSPQDYASISFPIDFTRTFDDLKVNIGGALGYQSYSQDKSAYFPNDPSRQAQLEal 1200
                  ************************************************************************************************9 PP

      BCSC_C  277 vaagtakeavyagssksGigyslraaaeyrlnkqlvvGgqlsidtagdYaessallylrYlf 338 
                   a+g+ k+a+y+g+sk+G+gy+l+a a+y+++k++++Ggql++dt+gdY+essa+ly+rYlf
  EHT98784.1 1201 AANGHVKSAFYEGNSKNGVGYNLHAGADYKIDKDVTIGGQLGYDTFGDYNESSAQLYFRYLF 1262
                  999*********************************************************99 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   2.0    0.0055       4.5      10      64 ..      55     109 ..      53     123 .. 0.91
   2 ?    1.0   0.8      0.76   6.2e+02       4      50 ..      83     127 ..      81     141 .. 0.61
   3 ?    5.2   0.4     0.036        30       9      35 ..     172     198 ..     169     233 .. 0.83
   4 !   19.5   3.5   1.3e-06     0.001       2      58 ..     276     332 ..     275     341 .. 0.90
   5 !    9.1   7.4    0.0023       1.9       4      54 ..     312     372 ..     311     378 .. 0.80
   6 !    8.0   0.3    0.0049         4       1      47 [.     355     402 ..     355     405 .. 0.79
   7 !   17.7   0.1   4.8e-06    0.0039      12      55 ..     398     441 ..     394     448 .. 0.90
   8 !   30.7   1.1     4e-10   3.2e-07       2      62 ..     463     524 ..     462     529 .. 0.90
   9 ?    6.4   0.3     0.015        13      37      64 ..     531     557 ..     529     561 .. 0.84
  10 ?    5.2   1.1     0.037        30       2      47 ..     574     619 ..     573     622 .. 0.84
  11 ?   -0.1   0.7       1.7   1.4e+03       3      64 ..     609     672 ..     607     674 .. 0.70
  12 !   16.9   2.7   8.1e-06    0.0066       1      57 [.     684     740 ..     684     749 .. 0.88
  13 ?    6.5   0.3     0.015        12      13      67 ..     730     782 ..     721     783 .. 0.80
  14 ?    6.2   1.3     0.018        15       1      51 [.     752     800 ..     752     803 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0055
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 A a l+++l  +p+n  a++lLA    ++g+ + A++  ++l +  p+d+ +a L
  EHT98784.1  55 AKASLQKVLMVEPDNTQALYLLALYSQQSGDNAGAMQYRARLSQVSPNDPHLAEL 109
                 77889***************999888888*******************9998876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.76
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLda 50 
                 +gd a A+++ +++ q +p+++ ++    +   +l  + +A+  L++
  EHT98784.1  83 SGDNAGAMQYRARLSQVSPNDPHLAE--LDNARQLQSIPQAQLSLAR 127
                 68888888888888888888877765..4444444444444444444 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.036
      TPR_19   9 eAlalleqalqedpknaearllLAeal 35 
                 +A+++l+q  ++ p++  arl+L +al
  EHT98784.1 172 QAIEALRQFSAQHPQDMGARLALGKAL 198
                 8**********************9998 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 1.3e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 l +gd  +A   + ++lq++p++a+a++++  +    g+++eA + L+++ +   d+
  EHT98784.1 276 LNSGDVNSAETSFGKVLQANPQDADALAGMGYVAQREGRYQEAADYLQRAAQLGGDQ 332
                 5689*********************************************99888884 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0023
      TPR_19   4 egdyaeAlalleqalqe..........dpknaearllLAeallalgqldeAealLdalpee 54 
                 eg+y+eA+++l++a q            + +a+  ++LA+a+ a ++ d A+al   +p+ 
  EHT98784.1 312 EGRYQEAADYLQRAAQLggdqsadrqkQAADARFYAQLANAQQAFKNGDSAQALALSAPLT 372
                 8*************9665555444333555999999****************998877775 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0049
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllL..AeallalgqldeAeal 47 
                 ++++gd a+Alal + + q++ + + a+  L  A++l  ++q+++A ++
  EHT98784.1 355 AFKNGDSAQALALSAPLTQAEGEKGVAAG-LfrADVLRRSNQPEQAYRT 402
                 5789************7666666444444.447*************766 PP

  == domain 7  score: 17.7 bits;  conditional E-value: 4.8e-06
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 ++++ +l+ dp+n +ar +L  +l ++++++eA  lL+ lpe+ 
  EHT98784.1 398 QAYRTILKNDPDNRNAREGLFYVLRQQNRTAEANTLLASLPESV 441
                 567788888********************************986 PP

  == domain 8  score: 30.7 bits;  conditional E-value: 4e-10
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.arya 62 
                 +a+g+  +A+a l+q +q +p+++++rl+LA+++ ++g+  +A  ++++++++ + + + ya
  EHT98784.1 463 VAAGNISAAIATLQQGIQRYPQDGWLRLDLARLYRQQGDSIQAASVMQPVMRDGASTaELYA 524
                 689***********************************************999888745555 PP

  == domain 9  score: 6.4 bits;  conditional E-value: 0.015
      TPR_19  37 algqldeAealLdalpeedpddaryasL 64 
                 ++g +++A alL+++p++++   +++ L
  EHT98784.1 531 ESGAWQQASALLARIPASAQT-RDMREL 557
                 67999**************98.777766 PP

  == domain 10  score: 5.2 bits;  conditional E-value: 0.037
      TPR_19   2 laegdyaeAlalleqalqedpknaearl.lLAeallalgqldeAeal 47 
                 la+g  a+A++ l++ l+ +p +  + + +LA+ l ++g+l+ A a+
  EHT98784.1 574 LAQGSDAAAANTLKA-LAVNPPDNPVDAgNLAQKLAKAGNLAGAVAV 619
                 789999999999999.799888666666599************9987 PP

  == domain 11  score: -0.1 bits;  conditional E-value: 1.7
      TPR_19   3 aegdyaeAlalleq....alqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 ++g++a A+a  +       q ++++ +a+     +l ++g   eA++ L++  ++++ +  ++a+L
  EHT98784.1 609 KAGNLAGAVAVVRGnmqrGVQGNAGDYAAQV---AVLNQAGLESEAQRFLSTPALQARSTpKQLADL 672
                 6777777755555532225566888888888...788899999999999999999888865666665 PP

  == domain 12  score: 16.9 bits;  conditional E-value: 8.1e-06
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 l ++++ya+A + l  alq dp+n ++  ++A+++   +  ++A  + d l+ +d  
  EHT98784.1 684 LRQQKQYAAAYDKLIGALQRDPQNRDLMFAMARLYQDGKMNKDAGVVYDYLMTQDTP 740
                 679********************************9999999998888888888877 PP

  == domain 13  score: 6.5 bits;  conditional E-value: 0.015
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                  + +++++d  +++ar + +++ la+++++ A +l  + +  dp  ++ + LlA+
  EHT98784.1 730 VYDYLMTQDTPSQDARVGAINVALAQNDVQRANELA-RGLTPDPT-PQRQLLLAQ 782
                 567778888889********************8865.55556666.788888887 PP

  == domain 14  score: 6.2 bits;  conditional E-value: 0.018
      TPR_19   1 llaegdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdal 51 
                 +la++d ++A +l + +    p+  +  +llLA++  a+g+  +A++ L ++
  EHT98784.1 752 ALAQNDVQRANELARGL---TPDpTPQRQLLLAQVAEANGDHSQAMRYLRTA 800
                 68999999999999997...666688888899**************999876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4     0.018        14      10      42 ..      44      77 ..      34      79 .. 0.82
   2 ?    4.9   0.1     0.069        56       3      35 ..      72     104 ..      70     109 .. 0.83
   3 ?    3.8   0.2      0.16   1.3e+02       1      23 [.     119     141 ..     119     145 .. 0.90
   4 !    9.3   0.8    0.0028       2.3      17      43 ..     170     196 ..     155     197 .. 0.82
   5 ?    7.3   0.0     0.012       9.9      12      42 ..     276     306 ..     269     308 .. 0.89
   6 !    8.2   5.3    0.0064       5.2       2      36 ..     300     334 ..     299     352 .. 0.85
   7 ?   -1.5   0.1       7.9   6.5e+03       3      21 ..     345     365 ..     339     369 .. 0.52
   8 !    8.2   0.0    0.0061         5       5      41 ..     384     417 ..     380     421 .. 0.87
   9 !   17.9   0.8   4.7e-06    0.0039       5      44 .]     456     495 ..     452     495 .. 0.94
  10 ?   -1.3   0.9       6.8   5.6e+03      12      38 ..     530     552 ..     518     560 .. 0.61
  11 ?    6.8   0.3     0.017        14       2      43 ..     564     605 ..     563     607 .. 0.88
  12 ?    7.2   1.0     0.013        11      11      44 .]     684     717 ..     681     717 .. 0.94
  13 !   11.7   0.3   0.00045      0.37       4      27 ..     777     800 ..     774     803 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.018
      TPR_14 10 allalGdpde.AiallrralalaPddaeawllla 42
                 ++++  +d+ A a l+++l   Pd+ +a++lla
  EHT98784.1 44 TYWHQKAHDDlAKASLQKVLMVEPDNTQALYLLA 77
                48899888775999****************9998 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.069
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 al++la +  ++Gd ++A+++  r+ +  P+d+
  EHT98784.1  72 ALYLLALYSQQSGDNAGAMQYRARLSQVSPNDP 104
                 88999999999*********7777777899997 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.16
      TPR_14   1 peallalaeallalGdpdeAial 23 
                 p+a+l la+  +++G+ ++A++ 
  EHT98784.1 119 PQAQLSLARQQARSGNIAAALQT 141
                 6899****************986 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0028
      TPR_14  17 pdeAiallrralalaPddaeawlllaq 43 
                 + +Ai++lr+  a++P+d  a+l+l++
  EHT98784.1 170 LPQAIEALRQFSAQHPQDMGARLALGK 196
                 668**********************97 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.012
      TPR_14  12 lalGdpdeAiallrralalaPddaeawllla 42 
                 l++Gd   A++ + ++l+++P+da+a+  ++
  EHT98784.1 276 LNSGDVNSAETSFGKVLQANPQDADALAGMG 306
                 789***********************98876 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0064
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddae 36 
                 +al+ ++ +  + G+++eA+++l+ra +l+ d+ +
  EHT98784.1 300 DALAGMGYVAQREGRYQEAADYLQRAAQLGGDQSA 334
                 6889999********************99988765 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 7.9
      TPR_14   3 allalaeal..lalGdpdeAi 21 
                  +++la a   + +Gd ++A+
  EHT98784.1 345 FYAQLANAQqaFKNGDSAQAL 365
                 455555554113344444444 PP

  == domain 8  score: 8.2 bits;  conditional E-value: 0.0061
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 l +a++l+++ +p+   +++r +l+ +Pd++ a+  l
  EHT98784.1 384 LFRADVLRRSNQPE---QAYRTILKNDPDNRNAREGL 417
                 6689**********...9999**********999876 PP

  == domain 9  score: 17.9 bits;  conditional E-value: 4.7e-06
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 ++la+   a+G+  +Aia l++ ++++P+d +++l la+l
  EHT98784.1 456 RQLAKRQVAAGNISAAIATLQQGIQRYPQDGWLRLDLARL 495
                 789999********************************97 PP

  == domain 10  score: -1.3 bits;  conditional E-value: 6.8
      TPR_14  12 lalGdpdeAiallrralalaPddaeaw 38 
                  ++G +++A all r+    P++a+++
  EHT98784.1 530 SESGAWQQASALLARI----PASAQTR 552
                 3468888888888887....5555555 PP

  == domain 11  score: 6.8 bits;  conditional E-value: 0.017
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++++a a+ +la+G  ++A++ l+++    Pd+++    laq
  EHT98784.1 564 NLQMATADQYLAQGSDAAAANTLKALAVNPPDNPVDAGNLAQ 605
                 6788999*******************8888999988777776 PP

  == domain 12  score: 7.2 bits;  conditional E-value: 0.013
      TPR_14  11 llalGdpdeAiallrralalaPddaeawlllaql 44 
                 l+++ ++++A + l  al+++P+++++ +++a+l
  EHT98784.1 684 LRQQKQYAAAYDKLIGALQRDPQNRDLMFAMARL 717
                 78999***************************97 PP

  == domain 13  score: 11.7 bits;  conditional E-value: 0.00045
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 +l+la++ +a+Gd+ +A+++lr a
  EHT98784.1 777 QLLLAQVAEANGDHSQAMRYLRTA 800
                 689******************987 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.022        18       8      32 ..      65      89 ..      58      95 .. 0.85
   2 !   10.3   0.0   0.00096      0.78       4      32 ..     290     318 ..     288     320 .. 0.94
   3 ?    4.0   1.4     0.096        78      12      33 ..     342     365 ..     337     366 .. 0.90
   4 ?    3.5   0.1      0.14   1.1e+02       2      32 ..     400     430 ..     399     430 .. 0.92
   5 !   13.4   0.0   9.5e-05     0.077       2      32 ..     475     505 ..     474     506 .. 0.93
   6 !    7.1   0.2    0.0097       7.9       3      33 ..     586     617 ..     585     618 .. 0.92
   7 ?    4.1   0.0     0.086        70       5      25 ..     700     723 ..     699     728 .. 0.82
   8 ?   -2.1   0.1       8.3   6.8e+03      18      32 ..     779     793 ..     778     795 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.022
      TPR_17  8 ldPnnadaynnLAelllknGdlmtA 32
                 +P+n  a+++LA +  + Gd + A
  EHT98784.1 65 VEPDNTQALYLLALYSQQSGDNAGA 89
                68*****************998877 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00096
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtA 32 
                 k+l+ +P +ada+  ++++  + G++++A
  EHT98784.1 290 KVLQANPQDADALAGMGYVAQREGRYQEA 318
                 899************************98 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.096
      TPR_17  12 nadaynnLAelll..knGdlmtAr 33 
                 +a +y +LA+++   knGd+++A+
  EHT98784.1 342 DARFYAQLANAQQafKNGDSAQAL 365
                 7899*******999********97 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.14
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y+  l++dP+n +a   L ++l++++++++A
  EHT98784.1 400 YRTILKNDPDNRNAREGLFYVLRQQNRTAEA 430
                 9999*******************99999987 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 9.5e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +++ ++++P + ++   LA+l++++Gd+ +A
  EHT98784.1 475 LQQGIQRYPQDGWLRLDLARLYRQQGDSIQA 505
                 6889***********************9987 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0097
      TPR_17   3 lkaleld.PnnadaynnLAelllknGdlmtAr 33 
                 lkal+ + P+n++   nLA+ l+k+G+l+ A+
  EHT98784.1 586 LKALAVNpPDNPVDAGNLAQKLAKAGNLAGAV 617
                 6999999999*****************99886 PP

  == domain 7  score: 4.1 bits;  conditional E-value: 0.086
      TPR_17   5 aleldPnnadaynnLAelll...k 25 
                 al++dP n d+++ +A+l+    +
  EHT98784.1 700 ALQRDPQNRDLMFAMARLYQdgkM 723
                 799****************85533 PP

  == domain 8  score: -2.1 bits;  conditional E-value: 8.3
      TPR_17  18 nLAelllknGdlmtA 32 
                 +LA++ + nGd+ +A
  EHT98784.1 779 LLAQVAEANGDHSQA 793
                 6999999***98887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.026        21      15      59 ..      54      95 ..      53     104 .. 0.80
   2 ?   -0.4   0.1       2.4   1.9e+03      34      55 ..     119     140 ..     109     159 .. 0.77
   3 !    8.1   0.4     0.005       4.1      14      45 ..     171     199 ..     165     223 .. 0.81
   4 !   26.0   3.8   1.4e-08   1.1e-05       6      64 ..     274     329 ..     271     335 .. 0.93
   5 ?    0.9   2.4      0.94   7.7e+02       1      49 [.     349     395 ..     349     399 .. 0.78
   6 !   11.8   0.2   0.00036       0.3      17      53 ..     397     430 ..     386     440 .. 0.83
   7 !    9.7   1.5    0.0017       1.4       3      49 ..     458     501 ..     456     510 .. 0.94
   8 ?    5.7   1.6     0.029        23       1      53 [.     490     538 ..     490     550 .. 0.71
   9 ?    1.1   3.7       0.8   6.5e+02       4      58 ..     570     621 ..     567     622 .. 0.75
  10 ?    2.6   0.5      0.26   2.1e+02       3      44 ..     680     718 ..     678     731 .. 0.88
  11 !   11.6   0.4   0.00041      0.33       5      61 ..     750     801 ..     747     806 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
      TPR_16 15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59
                 A a l+ +l      Pd+ +Al+ll++   + g+ a+A ++ ++
  EHT98784.1 54 LAKASLQKVLMVE---PDNTQALYLLALYSQQSGDNAGAMQYRAR 95
                5888899999999...*************9999****99976555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.4
      TPR_16  34 aeAllllgdaalrqgrlaeAaa 55 
                 ++A+l l++  +r g+ a+A++
  EHT98784.1 119 PQAQLSLARQQARSGNIAAALQ 140
                 5677777777777777777762 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.005
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaal 45 
                 ++A++al+++ +++   P++  A+l+lg a+ 
  EHT98784.1 171 PQAIEALRQFSAQH---PQDMGARLALGKALT 199
                 69************...***********9997 PP

  == domain 4  score: 26.0 bits;  conditional E-value: 1.4e-08
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +al++gd   A+  +  +l ++   P++a+Al + g +a r gr++eAa+++++a++ +
  EHT98784.1 274 SALNSGDVNSAETSFGKVLQAN---PQDADALAGMGYVAQREGRYQEAADYLQRAAQLG 329
                 689*******************...*****************************98665 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.94
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 la a+ a+++gd ++A+a+   ++ + ++    ++A l+++d++ r + 
  EHT98784.1 349 LANAQQAFKNGDSAQALALSAPLTQAEGEK--GVAAGLFRADVLRRSNQ 395
                 678999***********9988888888644..77888888888877655 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00036
      TPR_16  17 aaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 + a+++ lk+d   Pd++ A+ +l  ++ +q+r aeA
  EHT98784.1 397 EQAYRTILKND---PDNRNAREGLFYVLRQQNRTAEA 430
                 4567*******...**********************9 PP

  == domain 7  score: 9.7 bits;  conditional E-value: 0.0017
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 la+  ++ag+  +A+a l++ + r+   P++   +l l++++ +qg+
  EHT98784.1 458 LAKRQVAAGNISAAIATLQQGIQRY---PQDGWLRLDLARLYRQQGD 501
                 89999********************...*****************98 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.029
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaal.rqgrlaeA 53 
                 l+lar+++++gd  +Aa + + + ++++s+ +     l+ g + + + g ++ A
  EHT98784.1 490 LDLARLYRQQGDSIQAASVMQPVMRDGASTAE-----LYAGALNAsESGAWQQA 538
                 79*************************55544.....44444444244555555 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.8
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 a+ +l++g  ++Aa+ l+a+  +    Pd++  + +l++ ++++g+la+A+a++r
  EHT98784.1 570 ADQYLAQGSDAAAANTLKALAVNP---PDNPVDAGNLAQKLAKAGNLAGAVAVVR 621
                 666788888888888887777777...5555477899999999999999998876 PP

  == domain 10  score: 2.6 bits;  conditional E-value: 0.26
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaa 44 
                 + + ++++++y++A   l  al rd   P++++ +++ ++++
  EHT98784.1 680 EVDRLRQQKQYAAAYDKLIGALQRD---PQNRDLMFAMARLY 718
                 5678999******************...**999999877765 PP

  == domain 11  score: 11.6 bits;  conditional E-value: 0.00041
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 + al+++d ++A ++++ ++ +      +++ +lll+++a ++g++  A  ++r a 
  EHT98784.1 750 NVALAQNDVQRANELARGLTPDP-----TPQRQLLLAQVAEANGDHSQAMRYLRTAR 801
                 789*************8888888.....999********************999986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.23   1.9e+02      13      34 .]      48      69 ..      38      69 .. 0.86
   2 ?    2.1   0.1      0.36     3e+02       2      23 ..      71      92 ..      70     103 .. 0.82
   3 ?    4.8   0.0     0.049        40      12      34 .]     276     298 ..     271     298 .. 0.90
   4 !    8.2   0.6     0.004       3.3       1      29 [.     299     327 ..     299     328 .. 0.91
   5 ?    0.5   0.0       1.1   9.2e+02      15      34 .]     466     485 ..     463     485 .. 0.90
   6 ?    2.5   0.0      0.26   2.1e+02       6      23 ..     491     508 ..     488     510 .. 0.83
   7 ?    5.0   0.0     0.042        35       5      27 ..     778     800 ..     774     800 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.23
                HTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8 13 klgdyeeAkeyyekaleldpdn 34
                ++   + Ak++++k+l  +pdn
  EHT98784.1 48 QKAHDDLAKASLQKVLMVEPDN 69
                6666799************996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.36
                CHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkey 23
                +a+y+l++  ++ gd   A++y
  EHT98784.1 71 QALYLLALYSQQSGDNAGAMQY 92
                799*****************99 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.049
                 HHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  12 lklgdyeeAkeyyekaleldpdn 34 
                 l+ gd ++A+ ++ k+l+++p++
  EHT98784.1 276 LNSGDVNSAETSFGKVLQANPQD 298
                 789******************86 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.004
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekale 29 
                 a+a+  +g++ +  g+y+eA  y+++a +
  EHT98784.1 299 ADALAGMGYVAQREGRYQEAADYLQRAAQ 327
                 6789999*******************976 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.1
                 T-HHHHHHHHHHHHHHHHH. CS
       TPR_8  15 gdyeeAkeyyekaleldpdn 34 
                 g++ +A++++++ ++  p++
  EHT98784.1 466 GNISAAIATLQQGIQRYPQD 485
                 8999**********999985 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.26
                 HHHHHHHHTT-HHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkey 23 
                  l+++y+++gd  +A ++
  EHT98784.1 491 DLARLYRQQGDSIQAASV 508
                 79*********9988765 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.042
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyeka 27 
                 ++l+++ +  gd+ +A+ y++ a
  EHT98784.1 778 LLLAQVAEANGDHSQAMRYLRTA 800
                 689*****************976 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.066        54      14      47 ..      61      94 ..      37     107 .. 0.74
   2 ?    2.1   0.0      0.28   2.3e+02      41      80 ..     172     213 ..     167     215 .. 0.87
   3 !   11.6   0.6    0.0003      0.25       3      52 ..     279     329 ..     277     355 .. 0.88
   4 ?    4.5   0.3      0.05        41       9      75 ..     365     430 ..     337     437 .. 0.68
   5 ?    0.9   0.0      0.68   5.5e+02      29      80 ..     492     543 ..     487     565 .. 0.74
   6 ?    0.5   0.1       0.9   7.3e+02      33      66 ..     684     718 ..     683     730 .. 0.72
   7 ?    5.1   0.0     0.032        26      22      49 ..     773     800 ..     754     807 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.066
                HHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHH CS
      ANAPC3 14 rllaaetespedayllAlclylngqykrAyellr 47
                ++l  e+++ +++yllAl   ++g+   A+++  
  EHT98784.1 61 KVLMVEPDNTQALYLLALYSQQSGDNAGAMQYRA 94
                444699***************9999888887755 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.28
                 HHHHHHHCT.SHHHC-HHHHHHHHHHHHHT.T-HHHHHHHH- CS
      ANAPC3  41 rAyellrka.klnskslgcrylfAqcllkL.kkyeeAiaaLe 80 
                 +A+e lr++  + ++++g+r+ ++++l  + +   e+i +L+
  EHT98784.1 172 QAIEALRQFsAQHPQDMGARLALGKALTYQdSTRREGIELLS 213
                 79*******99****************877577778888775 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.0003
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.kln 52 
                 ++ ++A+  + ++l+a++++++++   +++  + g+y++A ++l++a +l 
  EHT98784.1 279 GDVNSAETSFGKVLQANPQDADALAGMGYVAQREGRYQEAADYLQRAaQLG 329
                 56789999**************************************95554 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.05
                 HHHHHHHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3   9 iflaerllaaetespedayll.AlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeA 75 
                 + l+ +l +ae e   +a l+ A +l +++q ++Ay+ + k+  ++ + ++r  +  +l ++++  eA
  EHT98784.1 365 LALSAPLTQAEGEKGVAAGLFrADVLRRSNQPEQAYRTILKN--DPDNRNAREGLFYVLRQQNRTAEA 430
                 444444555555555555555589999999999999998888..555555555555555555555555 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.68
                 HHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHH..HHTT-HHHHHHHH- CS
      ANAPC3  29 lAlclylngqykrAyellrkaklnskslgcrylfAqcl..lkLkkyeeAiaaLe 80 
                 lA  + ++g+  +A  + ++          + l+A +l   + + +++A a+L 
  EHT98784.1 492 LARLYRQQGDSIQAASVMQPVMR--DGASTAELYAGALnaSESGAWQQASALLA 543
                 68889999999999999999944..44444555555551145588888877775 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.9
                 HHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHH CS
      ANAPC3  33 lylngqykrAyellrka.klnskslgcrylfAqcl 66 
                 l +++qy  Ay+ l  a + ++++    + +A+ +
  EHT98784.1 684 LRQQKQYAAAYDKLIGAlQRDPQNRDLMFAMARLY 718
                 56899*******99999777777665555555544 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.032
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  22 spedayllAlclylngqykrAyellrka 49 
                  p+  +llA++   ng++ +A+++lr+a
  EHT98784.1 773 TPQRQLLLAQVAEANGDHSQAMRYLRTA 800
                 56677899*****************998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.53   4.3e+02       3      34 .]      38      69 ..      37      69 .. 0.84
   2 ?    0.9   0.1       0.8   6.5e+02       3      23 ..      72      92 ..      70     103 .. 0.87
   3 ?   -2.5   0.0       9.5   7.7e+03       5      23 ..     123     141 ..     119     143 .. 0.78
   4 !    7.8   0.0     0.005       4.1       8      34 .]     272     298 ..     269     298 .. 0.94
   5 !   18.3   1.6   2.1e-06    0.0017       1      30 [.     299     328 ..     299     331 .. 0.95
   6 ?   -1.2   0.0       3.7     3e+03      18      32 ..     397     408 ..     385     410 .. 0.53
   7 ?    2.3   0.0      0.28   2.3e+02       7      34 .]     458     485 ..     456     485 .. 0.86
   8 ?    0.1   0.0       1.4   1.2e+03       7      21 ..     492     506 ..     490     510 .. 0.82
   9 ?   -2.5   0.1       9.4   7.7e+03      19      33 ..     580     594 ..     579     595 .. 0.82
  10 ?   -0.7   0.1       2.5   2.1e+03       6      22 ..     602     618 ..     601     620 .. 0.89
  11 ?    1.2   0.6      0.62   5.1e+02      11      34 .]     684     707 ..     682     707 .. 0.92
  12 ?    4.3   0.2     0.066        53       6      27 ..     779     800 ..     775     801 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.53
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPnn 34
                al+ ++  + ++ + + A++ ++k+l  +P+n
  EHT98784.1 38 ALFDQATYWHQKAHDDLAKASLQKVLMVEPDN 69
                67777777788888899***********9997 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.8
       TPR_2  3 alynlGlayyklgdyeeAlea 23
                aly l+l   ++gd + A ++
  EHT98784.1 72 ALYLLALYSQQSGDNAGAMQY 92
                89************9999887 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 9.5
       TPR_2   5 ynlGlayyklgdyeeAlea 23 
                   l++  +++g+ + Al+ 
  EHT98784.1 123 LSLARQQARSGNIAAALQT 141
                 5688889999**9999975 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.005
       TPR_2   8 GlayyklgdyeeAleafekAleldPnn 34 
                 G +++++gd + A+  f k+l+ +P++
  EHT98784.1 272 GFSALNSGDVNSAETSFGKVLQANPQD 298
                 8999*********************86 PP

  == domain 5  score: 18.3 bits;  conditional E-value: 2.1e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a+al  +G+++ + g+y+eA++++++A +l
  EHT98784.1 299 ADALAGMGYVAQREGRYQEAADYLQRAAQL 328
                 78999**********************998 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3.7
       TPR_2  18 eeAleafekAleldP 32 
                 e+A   ++  l+ dP
  EHT98784.1 397 EQA---YRTILKNDP 408
                 555...555555555 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.28
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 l++   ++g+   A++ +++ ++ +P++
  EHT98784.1 458 LAKRQVAAGNISAAIATLQQGIQRYPQD 485
                 56666789******************86 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 1.4
       TPR_2   7 lGlayyklgdyeeAl 21 
                 l+++y+++gd  +A+
  EHT98784.1 492 LARLYRQQGDSIQAA 506
                 89*******987776 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 9.4
       TPR_2  19 eAleafekAleldPn 33 
                  A++   kAl+ +P 
  EHT98784.1 580 AAAANTLKALAVNPP 594
                 6888889*****995 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 2.5
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 nl++ ++k+g+++ A++
  EHT98784.1 602 NLAQKLAKAGNLAGAVA 618
                 7999*********9975 PP

  == domain 11  score: 1.2 bits;  conditional E-value: 0.62
       TPR_2  11 yyklgdyeeAleafekAleldPnn 34 
                 ++++++y+ A + +  Al+ dP+n
  EHT98784.1 684 LRQQKQYAAAYDKLIGALQRDPQN 707
                 689*******************97 PP

  == domain 12  score: 4.3 bits;  conditional E-value: 0.066
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                  l+++++++gd+ +A ++++ A
  EHT98784.1 779 LLAQVAEANGDHSQAMRYLRTA 800
                 69*****************988 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.8     0.003       2.4       2      43 ..      50      91 ..      48     113 .. 0.91
   2 ?    1.8   1.1      0.38   3.1e+02      22      43 ..     119     140 ..     100     147 .. 0.81
   3 !   13.1   0.2   0.00011      0.09       7      65 ..     173     231 ..     170     234 .. 0.78
   4 ?    4.1   1.9     0.072        59      14      50 ..     291     327 ..     282     346 .. 0.83
   5 ?   -2.1   1.3       6.1     5e+03      17      43 ..     340     366 ..     323     373 .. 0.71
   6 ?    3.5   0.1      0.11        89       4      46 ..     393     435 ..     390     446 .. 0.86
   7 !   11.4   0.2   0.00039      0.32       6      45 ..     470     509 ..     456     521 .. 0.89
   8 ?    4.8   1.5     0.043        35      20      46 ..     561     587 ..     547     595 .. 0.81
   9 ?    1.2   0.5      0.59   4.8e+02       4      42 ..     579     617 ..     576     626 .. 0.84
  10 ?    5.4   0.1     0.028        23       6      41 ..     692     727 ..     682     735 .. 0.70
  11 ?   -0.3   0.5       1.7   1.4e+03       8      45 ..     761     797 ..     754     800 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.003
      TPR_20  2 aadapelaeleaalaanpddldarldlAlallaagryeeAle 43
                a+d+   a+l++ l  +pd+ +a + lAl   + g+++ A++
  EHT98784.1 50 AHDDLAKASLQKVLMVEPDNTQALYLLALYSQQSGDNAGAMQ 91
                5667777899999***************************96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.38
      TPR_20  22 ldarldlAlallaagryeeAle 43 
                  +a+l lA++++  g+ ++Al+
  EHT98784.1 119 PQAQLSLARQQARSGNIAAALQ 140
                 599*****************97 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00011
      TPR_20   7 elaeleaalaanpddldarldlAlal.laagryeeAleqLleilkrdrkweddaarkqll 65 
                  +++l++  a++p+d+ arl+l +al ++ + ++e +e+L ++ + ++++ d + r++ll
  EHT98784.1 173 AIEALRQFSAQHPQDMGARLALGKALtYQDSTRREGIELLSTLASGNQDA-DRSLRQALL 231
                 6899*******************998356667778887666666655555.778888876 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.072
      TPR_20  14 alaanpddldarldlAlallaagryeeAleqLleilk 50 
                  l+anp+d da   +  +   +gry+eA++ L +  +
  EHT98784.1 291 VLQANPQDADALAGMGYVAQREGRYQEAADYLQRAAQ 327
                 589***************************9977655 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 6.1
      TPR_20  17 anpddldarldlAlallaagryeeAle 43 
                 a+ +   a+l+ A++ +++g+ ++Al+
  EHT98784.1 340 AADARFYAQLANAQQAFKNGDSAQALA 366
                 333445678888888888888888875 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.11
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAleqLl 46 
                 ++++ ++ ++ l+++pd+ +ar  l  +l +++r +eA ++L 
  EHT98784.1 393 SNQPEQAYRTILKNDPDNRNAREGLFYVLRQQNRTAEANTLLA 435
                 566668889999*************************988775 PP

  == domain 7  score: 11.4 bits;  conditional E-value: 0.00039
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqL 45 
                 + +a+l++ ++  p+d  +rldlA+++ ++g+  +A++ +
  EHT98784.1 470 AAIATLQQGIQRYPQDGWLRLDLARLYRQQGDSIQAASVM 509
                 6799****************************99998765 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.043
      TPR_20  20 ddldarldlAlallaagryeeAleqLl 46 
                  + +++++ A+++la+g  ++A++ L 
  EHT98784.1 561 VNFNLQMATADQYLAQGSDAAAANTLK 587
                 47889******************9985 PP

  == domain 9  score: 1.2 bits;  conditional E-value: 0.59
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAl 42 
                 da+   +l+a + + pd+   + +lA++l++ag+ + A+
  EHT98784.1 579 DAAAANTLKALAVNPPDNPVDAGNLAQKLAKAGNLAGAV 617
                 66777788888888899999999**********999997 PP

  == domain 10  score: 5.4 bits;  conditional E-value: 0.028
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeA 41 
                 +  ++l  al+ +p++ d+++++A+++  ++ +++A
  EHT98784.1 692 AAYDKLIGALQRDPQNRDLMFAMARLYQDGKMNKDA 727
                 444555566777777777777777777777777666 PP

  == domain 11  score: -0.3 bits;  conditional E-value: 1.7
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqL 45 
                   el + l+ +p+  + +l lA++  a+g++ +A+  L
  EHT98784.1 761 ANELARGLTPDPTP-QRQLLLAQVAEANGDHSQAMRYL 797
                 56677777777776.89999************999766 PP

>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.51   4.2e+02      87     128 ..    1082    1123 ..    1047    1127 .. 0.61
   2 !   13.8   0.2   5.5e-05     0.045      72     117 ..    1204    1252 ..    1167    1258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.51
     Opacity   87 GvlaGvkykltpnltldtgvrynrlGrleatrvktveaslGl 128 
                   v aG+   + +n++ + +++ n    +   +  + e+++G+
  EHT98784.1 1082 YVGAGAYSYVGENVASNNNLQANAGVYVRPFHADDRELKVGM 1123
                  444555445555555555555554444444455555555555 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.5e-05
     Opacity   72 lpkkeaf...asetrvGlGvlaGvkykltpnltldtgvrynrlGrleat 117 
                   + k+af   +s+  vG+   aG++yk+++++t+ + + y+ +G  + +
  EHT98784.1 1204 GHVKSAFyegNSKNGVGYNLHAGADYKIDKDVTIGGQLGYDTFGDYNES 1252
                  33455667889********************************998654 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.3   1.9e+03      18      34 .]      53      69 ..      53      69 .. 0.90
   2 ?    2.3   0.0       0.2   1.7e+02      10      34 .]     274     298 ..     269     298 .. 0.87
   3 !   15.7   1.5   1.2e-05    0.0094       1      30 [.     299     328 ..     299     329 .. 0.95
   4 ?   -1.3   0.1       2.8   2.3e+03      22      34 .]     398     410 ..     397     410 .. 0.91
   5 ?    1.2   0.0      0.46   3.7e+02      15      34 .]     466     485 ..     463     485 .. 0.91
   6 ?   -2.4   0.0       6.4   5.2e+03       7      16 ..     492     501 ..     490     505 .. 0.82
   7 ?   -1.6   0.3       3.5   2.8e+03      12      34 .]     685     707 ..     684     707 .. 0.70
   8 ?    1.8   0.0      0.29   2.4e+02       7      27 ..     780     800 ..     777     801 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.3
                HHHHHHHHHHHHHSTTH CS
       TPR_1 18 deAleyyekALelnPnn 34
                d A +  +k+L ++P+n
  EHT98784.1 53 DLAKASLQKVLMVEPDN 69
                579999*********98 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.2
                 HHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  10 ayfklgkydeAleyyekALelnPnn 34 
                   ++ g+ + A+  + k+L+ nP++
  EHT98784.1 274 SALNSGDVNSAETSFGKVLQANPQD 298
                 567789999**************86 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALel 30 
                 a+al ++G++ ++ g+y+eA +y ++A +l
  EHT98784.1 299 ADALAGMGYVAQREGRYQEAADYLQRAAQL 328
                 89*************************876 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.8
                 HHHHHHHHHSTTH CS
       TPR_1  22 eyyekALelnPnn 34 
                 ++y+  L+ +P+n
  EHT98784.1 398 QAYRTILKNDPDN 410
                 89*********98 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.46
                 T-HHHHHHHHHHHHHHSTTH CS
       TPR_1  15 gkydeAleyyekALelnPnn 34 
                 g+   A++  ++ ++ +P++
  EHT98784.1 466 GNISAAIATLQQGIQRYPQD 485
                 8999**************86 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 6.4
                 HHHHHHHTT- CS
       TPR_1   7 lGnayfklgk 16 
                 l+ +y+++g+
  EHT98784.1 492 LARLYRQQGD 501
                 7899*****9 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 3.5
                 HHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  12 fklgkydeAleyyekALelnPnn 34 
                 +++++y  A +    AL+ +P+n
  EHT98784.1 685 RQQKQYAAAYDKLIGALQRDPQN 707
                 67888888877666677777765 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.29
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                 l+++   +g++ +A  y + A
  EHT98784.1 780 LAQVAEANGDHSQAMRYLRTA 800
                 899999***********9877 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  20.6     2e-05     0.016      15     178 .]    1075    1262 ..    1067    1262 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2e-05
   OMP_b-brl   15 aassfggfyvggglglskvkvdgvgsdsgfgfgvgagyefnd......nvgvegglsy...sgdkdysgs..gktdikinllsvpvnagyafnlsds 100 
                  ++++ +g+yvg+g+  +++   g ++ s++++++ ag+++ +       + v+ +ls+   s++ +y++   g++   +++ s+++ +  +  + d 
  EHT98784.1 1075 DNGD-AGMYVGAGA--YSYV--GENVASNNNLQANAGVYVRPfhaddrELKVGMSLSWmdfSKNLSYFSYgqGGYFSPQDYASISFPIDFTRTFDDL 1166
                  3333.677777665..5566..444556778888888877555444466999999998666777777776755555557777788887777777677 PP

   OMP_b-brl  101 .vlpyggaGlg.ytkvevdvsgng.....................asdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlknntfqvgv 174 
                   v++ g +G++ y++ +  ++ n+                     +++s++  g++l aG+ y++ +++++++   y  +     +d++ ++ q+ +
  EHT98784.1 1167 kVNIGGALGYQsYSQDKSAYFPNDpsrqaqlealaanghvksafyEGNSKNGVGYNLHAGADYKIDKDVTIGGQLGYDTF-----GDYNESSAQLYF 1258
                  8**********74445555777778888888888888899999999*****************************99999.....888888888888 PP

   OMP_b-brl  175 gyrF 178 
                   y F
  EHT98784.1 1259 RYLF 1262
                  7766 PP

>> EF-G-binding_N  Elongation factor G-binding protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.3   2.7e+03      41      79 ..     403     441 ..     396     443 .. 0.77
   2 ?   11.8   0.0   0.00033      0.27      23      73 ..     740     798 ..     731     807 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.3
  EF-G-binding_N  41 IlelfpelseeqkelLeqiddiktkekaeklLeeLkeyV 79 
                     Il+  p+  ++++ l+  + + + +++a+ lL +L e V
      EHT98784.1 403 ILKNDPDNRNAREGLFYVLRQQNRTAEANTLLASLPESV 441
                     55555677777788887888888999*******999988 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00033
  EF-G-binding_N  23 svnDkkvveavkalaaekIlel.......fpelseeqkelLeqiddik.tkekaeklLe 73 
                      ++D++v +   ala+++++ +        p+++++++ lL+q+++ + ++++a ++L+
      EHT98784.1 740 PSQDARVGAINVALAQNDVQRAnelarglTPDPTPQRQLLLAQVAEANgDHSQAMRYLR 798
                     57899999999999999999999999999****************************97 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00018      0.15       2     148 ..     275     405 ..     274     481 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
       SPO22   2 AwkegdldlAehmlskakceenllrldpeeaeeLarllyniGksllskkkyeeavkWLqraldilekqesesksssdlselrlsvlrllarayleldqe 100
                 A+  gd + Ae+ + k      +l+++p++a  La + y + +    +++y+ea+ +Lqra +++  q+++++++  + + r+    + a+  +   ++
  EHT98784.1 275 ALNSGDVNSAETSFGK------VLQANPQDADALAGMGYVAQR----EGRYQEAADYLQRAAQLGGDQSADRQKQ--AADARFYAQLANAQQAF---KN 358
                 88999***********......78889********99886655....56699999***********999999999..88888888877777777...58 PP

       SPO22 101 esyekalkavellqkeygkkehpsllllklkillkreadeeeieeale 148
                  +  +al++   l +  g +  ++  l + ++l++++ +e++++ +l+
  EHT98784.1 359 GDSAQALALSAPLTQAEG-EKGVAAGLFRADVLRRSNQPEQAYRTILK 405
                 888888888888844444.44599999999999999999999988887 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       4.6   3.7e+03       2      20 ..      71      89 ..      70      91 .. 0.88
   2 ?   13.7   0.8   9.1e-05     0.074       1      25 [.     119     143 ..     119     144 .. 0.95
   3 ?    2.4   2.2       0.4   3.2e+02       3      22 ..     301     320 ..     299     324 .. 0.87
   4 ?    5.2   0.6     0.049        40       3      23 ..     347     367 ..     346     369 .. 0.92
   5 ?    3.6   0.1      0.16   1.3e+02       2      23 ..     381     402 ..     380     404 .. 0.89
   6 ?   -0.9   0.0       4.8     4e+03      10      24 ..     420     434 ..     419     436 .. 0.84
   7 ?   -1.3   0.2       6.1     5e+03       7      26 .]     458     477 ..     456     477 .. 0.88
   8 ?   13.7   0.2   9.2e-05     0.075       2      24 ..     487     509 ..     486     511 .. 0.91
   9 ?    3.0   0.2      0.26   2.1e+02       6      25 ..     602     621 ..     600     621 .. 0.90
  10 ?    4.5   0.4     0.086        70       4      22 ..     777     795 ..     774     799 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 4.6
       TPR_4  2 rallaLArallalGdldeA 20
                +al++LA   ++ Gd + A
  EHT98784.1 71 QALYLLALYSQQSGDNAGA 89
                699***********99888 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.1e-05
       TPR_4   1 arallaLArallalGdldeAralle 25 
                 ++a+l LAr +++ G+ ++A+++++
  EHT98784.1 119 PQAQLSLARQQARSGNIAAALQTWR 143
                 789********************98 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.4
       TPR_4   3 allaLArallalGdldeAra 22 
                 al++++ ++++ G++ eA++
  EHT98784.1 301 ALAGMGYVAQREGRYQEAAD 320
                 8999**************97 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.049
       TPR_4   3 allaLArallalGdldeAral 23 
                 a+la A+ ++  Gd+++A+al
  EHT98784.1 347 AQLANAQQAFKNGDSAQALAL 367
                 88999**************97 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.16
       TPR_4   2 rallaLArallalGdldeAral 23 
                 +a l++A +l +  ++++A ++
  EHT98784.1 381 AAGLFRADVLRRSNQPEQAYRT 402
                 67899**************875 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 4.8
       TPR_4  10 allalGdldeArall 24 
                 +l ++ + +eA +ll
  EHT98784.1 420 VLRQQNRTAEANTLL 434
                 6899*******8887 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 6.1
       TPR_4   7 LArallalGdldeAraller 26 
                 LA  + a+G+  +A a+l++
  EHT98784.1 458 LAKRQVAAGNISAAIATLQQ 477
                 899999********999986 PP

  == domain 8  score: 13.7 bits;  conditional E-value: 9.2e-05
       TPR_4   2 rallaLArallalGdldeArall 24 
                 +++l+LAr++ ++Gd+ +A+ ++
  EHT98784.1 487 WLRLDLARLYRQQGDSIQAASVM 509
                 89*****************9876 PP

  == domain 9  score: 3.0 bits;  conditional E-value: 0.26
       TPR_4   6 aLArallalGdldeAralle 25 
                 +LA+ l+ +G+l+ A a+++
  EHT98784.1 602 NLAQKLAKAGNLAGAVAVVR 621
                 89999************987 PP

  == domain 10  score: 4.5 bits;  conditional E-value: 0.086
       TPR_4   4 llaLArallalGdldeAra 22 
                 +l+LA+++ a Gd+ +A +
  EHT98784.1 777 QLLLAQVAEANGDHSQAMR 795
                 799*************987 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       6.1   4.9e+03     189     214 ..      69      92 ..      41     105 .. 0.60
   2 ?   -1.3   0.0      0.92   7.5e+02     208     256 ..     281     329 ..     277     384 .. 0.70
   3 ?    9.1   0.1   0.00065      0.53      51     115 ..     390     453 ..     379     465 .. 0.90
   4 ?    0.4   0.0      0.28   2.3e+02     205     250 ..     465     510 ..     455     514 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6.1
                 SHHHHHHHHHHHHHHHHT-SHHHHHH CS
       NARP1 189 sallwvlyflAqhydklgsrekAley 214
                 ++   +ly+lA + ++ g+   A++y
  EHT98784.1  69 NT--QALYLLALYSQQSGDNAGAMQY 92 
                 33..3566666666666666666655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.92
                 SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT CS
       NARP1 208 rekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklD 256
                 ++ A +   k ++ +p+  +     + + ++ G  ++Aa+ +++a +l 
  EHT98784.1 281 VNSAETSFGKVLQANPQDADALAGMGYVAQREGRYQEAADYLQRAAQLG 329
                 5566666777888888888888888888888888888888888887773 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00065
                 TT-HHHHHHHHHHHHHH-TT-CHHHHHHHHHT..SSS-HHHHHHHHHHTTTS-TT-SHHHHTHHH CS
       NARP1  51 LgrkeeAeatyeaLlernpenskYyeglekakklskedeeallalydelaekyprsdaprRlpLd 115
                 L r ++ e++y+++l+  p+n++  egl  +++ +++ +++ + l+++l e++++s aprR   d
  EHT98784.1 390 LRRSNQPEQAYRTILKNDPDNRNAREGLFYVLR-QQNRTAEANTLLASLPESVTQSVAPRRSSVD 453
                 7889999*************************9.66679999*******************7766 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.28
                 HT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHH CS
       NARP1 205 lgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevme 250
                  g+ + A+ ++++ i++ p+   l l  ar+++++Gd  +Aa+vm+
  EHT98784.1 465 AGNISAAIATLQQGIQRYPQDGWLRLDLARLYRQQGDSIQAASVMQ 510
                 566778999999999999999999999*****************97 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.079        64      15      36 ..      57      78 ..      53      84 .. 0.83
   2 ?    2.8   0.0      0.12        94      11      38 ..     171     198 ..     170     201 .. 0.93
   3 ?    7.5   0.0    0.0039       3.1       8      40 ..     279     311 ..     276     313 .. 0.88
   4 ?   -0.2   0.3         1   8.5e+02       7      23 ..     312     328 ..     311     329 .. 0.90
   5 ?   -2.7   0.1         6   4.9e+03      26      39 ..     341     354 ..     339     355 .. 0.85
   6 ?   -3.3   0.0       9.4   7.7e+03      16      31 ..     399     414 ..     398     417 .. 0.77
   7 ?    7.0   0.2    0.0057       4.7       6      42 .]     464     500 ..     460     500 .. 0.93
   8 ?   -0.1   0.1      0.96   7.9e+02       2      23 ..     571     591 ..     570     597 .. 0.74
   9 ?    6.5   0.4    0.0084       6.8       2      39 ..     682     719 ..     682     721 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.079
      TPR_11 15 eaYkkAlkldPdnaeayynLGl 36
                ++++k l   Pdn  a+y L+l
  EHT98784.1 57 ASLQKVLMVEPDNTQALYLLAL 78
                7899****************94 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGlay 38 
                 ++Aiea+++  +  P++  a ++LG+a+
  EHT98784.1 171 PQAIEALRQFSAQHPQDMGARLALGKAL 198
                 79************************96 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0039
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G+ + A +++ k l+ +P++a+a+ ++G++ ++
  EHT98784.1 279 GDVNSAETSFGKVLQANPQDADALAGMGYVAQR 311
                 8888899999******************98665 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1
      TPR_11   7 qGkyeeAieaYkkAlkl 23 
                  G+y eA   +++A +l
  EHT98784.1 312 EGRYQEAADYLQRAAQL 328
                 59***********9887 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 6
      TPR_11  26 dnaeayynLGlayy 39 
                  +a++y  L++a++
  EHT98784.1 341 ADARFYAQLANAQQ 354
                 6899*******986 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 9.4
      TPR_11  16 aYkkAlkldPdnaeay 31 
                 aY++ lk dPdn +a 
  EHT98784.1 399 AYRTILKNDPDNRNAR 414
                 78888999***98876 PP

  == domain 7  score: 7.0 bits;  conditional E-value: 0.0057
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 + G++ +Ai+ +++ ++  P++ ++ + L+ +y +qG
  EHT98784.1 464 AAGNISAAIATLQQGIQRYPQDGWLRLDLARLYRQQG 500
                 679****************************999998 PP

  == domain 8  score: -0.1 bits;  conditional E-value: 0.96
      TPR_11   2 dayyeqGkyeeAieaYkkAlkl 23 
                 d y +qG   +A + +k+ l+ 
  EHT98784.1 571 DQYLAQGSDAAAANTLKA-LAV 591
                 8899****9999999864.444 PP

  == domain 9  score: 6.5 bits;  conditional E-value: 0.0084
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 d +++q +y +A  ++  Al+ dP+n ++ ++++ +y+
  EHT98784.1 682 DRLRQQKQYAAAYDKLIGALQRDPQNRDLMFAMARLYQ 719
                 679***********************999999998886 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2       1.8   1.4e+03       1      27 [.      72      96 ..      72     113 .. 0.77
   2 ?   11.5   0.9   0.00029      0.24       1      28 [.     301     328 ..     301     337 .. 0.83
   3 ?    5.4   0.0     0.025        21       4      21 ..     491     508 ..     488     511 .. 0.87
   4 ?    2.3   0.1      0.26   2.1e+02       4      24 ..     779     799 ..     778     802 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.8
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsLa 27
                aL+ La   ++ Gd + A ++  +   
  EHT98784.1 72 ALYLLALYSQQSGDNAGAMQYRAR--L 96
                68888888899*********9999..3 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00029
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLal 28 
                 aL  ++ + +r+G+y+eA+++++++ +l
  EHT98784.1 301 ALAGMGYVAQREGRYQEAADYLQRAAQL 328
                 677899999***************5544 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.025
       TPR_7   4 nLarlysrlGdyeeAiel 21 
                  Larly+++Gd  +A+++
  EHT98784.1 491 DLARLYRQQGDSIQAASV 508
                 69*********9999875 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.26
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                  La++ ++ Gd+++A ++++ 
  EHT98784.1 779 LLAQVAEANGDHSQAMRYLRT 799
                 799***************986 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.2    0.0047       3.8       5      68 ..      45     109 ..      42     114 .. 0.79
   2 ?    2.0   0.1      0.28   2.3e+02      47      68 ..     172     193 ..     169     195 .. 0.89
   3 ?   14.0   1.3   5.2e-05     0.042       7      61 ..     277     335 ..     273     351 .. 0.76
   4 ?    1.4   3.7      0.43   3.5e+02      10      50 ..     467     507 ..     458     562 .. 0.89
   5 ?    1.3   0.1      0.46   3.7e+02       5      49 ..     573     617 ..     571     619 .. 0.81
   6 ?    1.1   1.0      0.54   4.4e+02      41      72 ..     686     717 ..     684     718 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0047
       TPR_9   5 aireedwe.ralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 ++ ++ ++  a a ++ +l++ Pd  + ++  +l  +q+G+ ++A++   +  +++p++p  + +
  EHT98784.1  45 YWHQKAHDdLAKASLQKVLMVEPDNTQALYLLALYSQQSGDNAGAMQYRARLSQVSPNDPHLAEL 109
                 544444440455567889999**************************999999999988877655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.28
       TPR_9  47 aAladLeaylalapdapdaeai 68 
                 +A+++L ++ a+ p++  a+++
  EHT98784.1 172 QAIEALRQFSAQHPQDMGARLA 193
                 8**************9988875 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 5.2e-05
       TPR_9   7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap....d 61 
                 ++ d   a      +l+ +P+d++ +   G + ++ G++++A++ L+++++l +    d
  EHT98784.1 277 NSGDVNSAETSFGKVLQANPQDADALAGMGYVAQREGRYQEAADYLQRAAQLGGdqsaD 335
                 555666666666678999********************************777643321 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.43
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAla 50 
                 + ++a+a+++  ++  P+d  +r+d ++l+ q+G+  +A+ 
  EHT98784.1 467 NISAAIATLQQGIQRYPQDGWLRLDLARLYRQQGDSIQAAS 507
                 567889999999999999999999*****999999888876 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.46
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAl 49 
                 ++ +   ++a  ++  l + +Pd p +    ++ la+ G+l++A+
  EHT98784.1 573 YLAQGSDAAAANTLKALAVNPPDNPVDAGNLAQKLAKAGNLAGAV 617
                 555666678888888888889999999999999999999999997 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.54
       TPR_9  41 qlGclsaAladLeaylalapdapdaeairaqL 72 
                 q+ +++aA + L  +l+ +p+++d   ++a+L
  EHT98784.1 686 QQKQYAAAYDKLIGALQRDPQNRDLMFAMARL 717
                 7789********************99999997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       7.8   6.3e+03      24      58 ..     168     201 ..     167     204 .. 0.75
   2 ?   11.6   8.0   0.00033      0.27       3      67 ..     299     365 ..     294     369 .. 0.79
   3 ?   -2.0   0.0       5.8   4.7e+03      50      67 ..     416     433 ..     397     436 .. 0.66
   4 ?    0.9   0.1      0.72   5.9e+02      49      76 ..     456     483 ..     419     484 .. 0.76
   5 ?    7.5   0.4     0.006       4.9      40      66 ..     481     507 ..     464     510 .. 0.78
   6 ?   -2.4   0.3       7.6   6.2e+03      13      32 ..     684     703 ..     684     719 .. 0.83
   7 ?    5.0   0.0     0.037        30      49      71 ..     778     800 ..     754     821 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.8
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyral 58 
                 +ll +a+e+ r+ +  +hp+   ++ +Lg ++ ++
  EHT98784.1 168 ALLPQAIEALRQ-FSAQHPQDMGARLALGKALTYQ 201
                 567788888855.4789999999999999888665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00033
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleia.rrllGpdh.pltattlrnLgrlyralgryeeAlel 67 
                 a al  ++ v +r gry+eA ++l++a ++   ++ + ++ ++ a+ +  L+ +++a+++ + A++l
  EHT98784.1 299 ADALAGMGYVAQREGRYQEAADYLQRAAQLGgDQSADRQKqAADARFYAQLANAQQAFKNGDSAQAL 365
                 5566579999999999999999999999999866655555599999999999998877777777665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.8
      TPR_12  50 nLgrlyralgryeeAlel 67 
                 +L  ++r+++r++eA  l
  EHT98784.1 416 GLFYVLRQQNRTAEANTL 433
                 555578888888888665 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.72
      TPR_12  49 rnLgrlyralgryeeAlelleealaiae 76 
                 r L+  + a+g+  +A++ l++ +++++
  EHT98784.1 456 RQLAKRQVAAGNISAAIATLQQGIQRYP 483
                 5677778899999999999999999886 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.006
      TPR_12  40 dhpltattlrnLgrlyralgryeeAle 66 
                  +p+  + + +L+rlyr++g+  +A +
  EHT98784.1 481 RYPQDGWLRLDLARLYRQQGDSIQAAS 507
                 35788999*************999975 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 7.6
      TPR_12  13 lrrlgrydeAlellekalei 32 
                 lr++++y+ A + l  al++
  EHT98784.1 684 LRQQKQYAAAYDKLIGALQR 703
                 68999999999999888876 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.037
      TPR_12  49 rnLgrlyralgryeeAlelleea 71 
                   L+++ +a g++ +A ++l+ a
  EHT98784.1 778 LLLAQVAEANGDHSQAMRYLRTA 800
                 56888888888888888888776 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.087        71       4      80 ..      29     105 ..      26     117 .. 0.88
   2 ?   -0.8   0.1       1.4   1.1e+03      40      72 ..     292     326 ..     287     376 .. 0.73
   3 ?    5.8   0.7     0.012       9.8      54     117 ..     495     555 ..     484     562 .. 0.80
   4 ?    0.7   0.1      0.46   3.8e+02      20      73 ..     751     802 ..     743     811 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.087
  HrpB1_HrpK   4 lqcskelvggLievlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveaeasgtpy 80 
                 ++ s+ ++++L + +++  ++++++ a++ L+ + +  P ++++  l ++   + g+ ++A+++ + +++ +++ p 
  EHT98784.1  29 AESSNPALQALFDQATYWHQKAHDDLAKASLQKVLMVEPDNTQALYLLALYSQQSGDNAGAMQYRARLSQVSPNDPH 105
                 678999*******************************************************9998888777776655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
  HrpB1_HrpK  40 LrPevaeldllegvllier..grweeAlrlLreve 72 
                 L+ + +++d+l g+ ++++  gr++eA+ +L+   
  EHT98784.1 292 LQANPQDADALAGMGYVAQreGRYQEAADYLQRAA 326
                 55556666777777666542278999998887654 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.012
  HrpB1_HrpK  54 lliergrweeAlrlLreveaeasgtpyakaLlAlcLaalrDeeWrayAeevlesdadpdalaLv 117
                 l+ ++g+   A+ +++ v    + ++  ++L+A +L+a +  +W+++   +    a ++++ ++
  EHT98784.1 495 LYRQQGDSIQAASVMQPVM---RDGASTAELYAGALNASESGAWQQASALLARIPASAQTRDMR 555
                 5667888888889999888...66777889***************9988887777777777665 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.46
  HrpB1_HrpK  20 lalasedtedaellLdalrvLrPe.vaeldllegvlliergrweeAlrlLrevea 73 
                 +ala++d + a++l    r L P  +++ +ll ++++ ++g+ + A+r+Lr+  +
  EHT98784.1 751 VALAQNDVQRANEL---ARGLTPDpTPQRQLLLAQVAEANGDHSQAMRYLRTARG 802
                 55555555555555...577888646889999999999*************9865 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0024         2      20      43 ..      55      78 ..      53      87 .. 0.86
   2 ?    2.6   0.1      0.18   1.5e+02      24      38 ..     400     414 ..     394     415 .. 0.86
   3 ?   -0.7   0.1       1.9   1.5e+03      14      36 ..     687     709 ..     686     711 .. 0.89
   4 ?   -1.4   0.0       3.3   2.7e+03      15      26 ..     788     799 ..     787     800 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0024
                HHHHHHHHHHHTTS-HHHHHHHHH CS
  Fis1_TPR_C 20 ArryvdalLeiEPenrQaqsLkel 43
                A+  ++ +L +EP+n Qa+ L +l
  EHT98784.1 55 AKASLQKVLMVEPDNTQALYLLAL 78
                7888999************99876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.18
                 HHHHHHHTTS-HHHH CS
  Fis1_TPR_C  24 vdalLeiEPenrQaq 38 
                  +++L+ +P+nr+a+
  EHT98784.1 400 YRTILKNDPDNRNAR 414
                 5799*********97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.9
                 HT-HHHHHHHHHHHHHHTTS-HH CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPenrQ 36 
                 +++Y  A   +   L+ +P+nr 
  EHT98784.1 687 QKQYAAAYDKLIGALQRDPQNRD 709
                 5899999999999********95 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 3.3
                 T-HHHHHHHHHH CS
  Fis1_TPR_C  15 geYseArryvda 26 
                 g++s+A+ry+++
  EHT98784.1 788 GDHSQAMRYLRT 799
                 89*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.51
# Mc/sec: 7527.93
//
Query:       EHT98785.1  [L=148]
Description: hypothetical protein CKS_4399 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-11   42.1   0.0    9.3e-11   41.8   0.0    1.1  1  Cellsynth_D  Cellulose synthase subunit D
  ------ inclusion threshold ------
      0.063   13.6   0.1       0.13   12.6   0.1    1.5  1  ATP-synt_C   ATP synthase subunit C


Domain annotation for each model (and alignments):
>> Cellsynth_D  Cellulose synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     1e-14   9.3e-11      15     113 ..      30     128 ..      19     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1e-14
  Cellsynth_D  15 qvgievrnellrevgrgmatrlqpplcqtvdklqielnallalinwgtvtlellsedqalrivheelpqvgsagepagtw...lapvleglygrwvts 109
                  ++g e    +l ++g  +a+r   p ++tv++l+ e n  la  nwg+v+l+  ++d a+ i h   p  g +  pa  w   +a +l gl+  w+  
   EHT98785.1  30 NAGQEQAMAFLYNMGESLAARYALPAARTVQDLERECNLQLARFNWGFVQLQ--PQDSAILIKHHAAPA-GDSYRPAADWqtaFAAILAGLFSGWLQG 124
                  578888889999*************************************975..9**********9996.7778899888444689************ PP

  Cellsynth_D 110 qaga 113
                  q g+
   EHT98785.1 125 QGGS 128
                  *997 PP

>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.5e-05      0.13       4      29 ..     109     134 ..     108     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
                 HHHH.GGGHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   4 glavGlsalgsGigiGkagsagirav 29 
                 ++a +l++l+sG+ +G  gs+++  +
  EHT98785.1 109 AFAAILAGLFSGWLQGQGGSKAVPVT 134
                 57888****************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1093.40
//
Query:       EHT98786.1  [L=335]
Description: endoglucanase precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-102  342.0  11.8   3.4e-102  341.8  11.8    1.0  1  Glyco_hydro_8  Glycosyl hydrolases family 8


Domain annotation for each model (and alignments):
>> Glyco_hydro_8  Glycosyl hydrolases family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.8  11.8  1.9e-106  3.4e-102      10     339 ..      12     330 ..       3     333 .. 0.95

  Alignments for each domain:
  == domain 1  score: 341.8 bits;  conditional E-value: 1.9e-106
                    XXXXXXXXXXXXX---H.HHHHHHHHHB-TTS-B-BTTSTT-BEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTTTS---SEEEE-TTS-E CS
  Glyco_hydro_8  10 allllaafadsaaianaleWeqfkskyitseGRvqdtgnanksttsEGqgyglllavaagdraaFdnlyrwtkvnLaqtkekLfsWrfdksenskv 105
                    +   +++f   +a+an  +W+ +ks++++s+GR++dtgn+n+s+t EGqgyg+llava++draaFd l++wt++ L++ ++ Lf+Wr+ ++++ +v
     EHT98786.1  12 V-CFMVMFFSAQAMAN--GWDTYKSRFLQSDGRIIDTGNNNVSHT-EGQGYGMLLAVAYDDRAAFDRLWKWTRTTLRNPQNDLFYWRYIPGAQDPV 103
                    3.34555555667788..8**************************.************************************************** PP

                    EEE-S-BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHEEEETTE.EEE-SSSSSSBESSEEEE-TTSS-.HHHHHHHGGG-TT.HHHHH CS
  Glyco_hydro_8 106 kddknnAsDgDvliAlsLlkAgkkwkeqrynyitdalakiiavenvmveaGtvvllpGavgfakndsvilNpSYfa.PalaqfadrtgaprWrqva 200
                     d knnAsDgDvliA++L +A +kw+   y++ +d ++ +i  + v  + G++vl+pGa gf+kn++v+lN SYf+  a+++f +r++ ++W +++
     EHT98786.1 104 AD-KNNASDGDVLIAWALQRAAQKWNVADYQQESDRIQRAIVKLDVANFGGYTVLMPGAQGFNKNSYVVLNSSYFLfVAWQEFGQRSHLQVWNKLI 198
                    **.********************************************************************************************* PP

                    HHHHHHHHHT-T..TS---SSEEEETTTEEE-S--TT-EESTTTHHHHHHHHTS-TTSHHHHHHHHHTHHHHHHHHHHSS-ESEEETTT--EESE- CS
  Glyco_hydro_8 201 edslrlvdearfgqkglspDWvavnadkalalaaefplrasydaiRvalylswyddadkakadalsnFkkiayanikdgytpekvdvasgktatyn 296
                    + ++ l++++ fg+  l+ DWva+nad+++a+a ++  r+sydaiRv+l + wyd     ++ al +F++  ++ + +  tp++ dv+++ +a+yn
     EHT98786.1 199 DGGMALLGKMHFGNSDLPLDWVALNADGSVAPAVGYSNRFSYDAIRVPLNIWWYD----PQSLALGPFQR-LWQGYSRTNTPAWFDVLANTAAPYN 289
                    *******************************************************....7889*******.************************* PP

                    .-HHHHHHHHHH--SHHHHHHHHT---TT-HHHHHHHHHHHHH CS
  Glyco_hydro_8 297 aaagllavadltlanriageladlkdasedYysaaLrllvlla 339
                    + +gllav+dl+l++   g l+d    +++Y+sa+L+ll   a
     EHT98786.1 290 MDGGLLAVRDLVLNQ--TGYLSDKLSPGQNYFSASLQLLTWTA 330
                    ***********9988..788999999999*********98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2874.40
//
Query:       EHT98787.1  [L=669]
Description: hypothetical protein CKS_4401 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-63  212.0   0.4    2.8e-62  210.4   0.4    1.9  1  EAL       EAL domain
    3.5e-54  181.9   1.5    9.6e-54  180.5   1.5    1.8  1  GAPES3    Gammaproteobacterial periplasmic sensor domain
    3.6e-20   72.3   4.6    5.2e-20   71.8   1.4    2.7  3  GGDEF     Diguanylate cyclase, GGDEF domain
    1.2e-07   32.0   0.0    4.6e-07   30.1   0.0    2.1  1  HAMP      HAMP domain
  ------ inclusion threshold ------
      0.012   15.8   0.1       0.76   10.1   0.0    3.2  3  CHASE8    Periplasmic sensor domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.4   0.4   7.8e-66   2.8e-62       3     237 ..     418     650 ..     416     651 .. 0.93

  Alignments for each domain:
  == domain 1  score: 210.4 bits;  conditional E-value: 7.8e-66
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 ++ + l+++++aly+QP++d++tg++ g+eallr++ +dg+   peef++ ae+ g+++++ rwv+e+a+++l+ ++ +     ++lsin+s+ +l+d 
  EHT98787.1 418 DILQGLHDEQFALYLQPQIDMRTGRLAGAEALLRMRQADGRYGLPEEFIASAEEIGVISAIGRWVFEEACRILAGWQrH--GVRVPLSINISAVQLRDV 514
                 577899***********************************99*********************************744..788999************ PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHH...HCCC--SEEEE-HHHHTTTTTSCHHHHHHHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsy...larlppdiiKldrslladleedeeaqalvka 196
                 +++++l++ll+++ ++p  Lvleite++ + + e++ +++l++L++ G+ +alddfg gys+l+y   ++ lp++ +K drs++a l+   e+ ++v+ 
  EHT98787.1 515 SIVNHLQSLLAHHSIAPGTLVLEITETAQMGDAEQA-ISLLRMLQKTGVAVALDDFGMGYSNLNYlhqFKALPVNKLKMDRSFVAALP---EDDTMVRI 609
                 **********999999999********665555555.59*************************933346799*************97...89999999 PP

                 CHHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT-- CS
         EAL 197 lialakelgikvvaegVeteeqlealrelgcdlvQGyllsk 237
                 ++a+a  ++++v+aegVet+eq ++l + g++ +QGyl+s+
  EHT98787.1 610 VAAIADIIDLDVIAEGVETSEQRDWLLARGITIGQGYLYSE 650
                 9999999*******************************997 PP

>> GAPES3  Gammaproteobacterial periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   1.5   2.7e-57   9.6e-54       1     121 []      36     155 ..      36     155 .. 0.99

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 2.7e-57
      GAPES3   1 qqrredyakqleniavsvrqpLsdalLkadleeakeilislkasgilsradvvlPedvqvlrldfaterpvpelakrvfelPveisvPLyslerasaep 99 
                 qqrr dya+q+enia++vrqpLs+a+Lkad+++a++il+slk++gilsradvvlP+ +q+l+++f++e+pvp+l++r+felPv+i++PLys+e+ +  p
  EHT98787.1  36 QQRRIDYAQQMENIAHTVRQPLSEAVLKADIPQAERILNSLKPAGILSRADVVLPNAFQALHANFENEKPVPRLIARIFELPVQITLPLYSVEH-TGLP 133
                 8*********************************************************************************************.99** PP

      GAPES3 100 kplayLvLqaDsyRlYrfilst 121
                 kplayLvLqa+s+R+Y+filst
  EHT98787.1 134 KPLAYLVLQANSFRVYQFILST 155
                 *******************996 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.18   6.6e+02      80     114 ..     213     245 ..     205     247 .. 0.87
   2 !   71.8   1.4   1.5e-23   5.2e-20       6     161 .]     247     397 ..     242     397 .. 0.96
   3 ?   -1.2   0.0      0.42   1.5e+03      67      89 ..     410     433 ..     403     454 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.18
                 SSSEEEEEEECSSHHHHHHHHHHHHHHHHCS-EEE CS
       GGDEF  80 ggdeFaillpetsseeaaelaerirrllaklkepv 114
                  +de+ +l+ + +++  +++ e i+ ++++l++++
  EHT98787.1 213 RDDEIGMLIRSYNRN--QQVLESIHDQMSRLTTHF 245
                 579**********88..999999999999998876 PP

  == domain 2  score: 71.8 bits;  conditional E-value: 1.5e-23
                 CCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHHHHH CS
       GGDEF   6 lTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaelaerir 104
                 +T+LpNR+l+   leq ++   r  + ++v+++ ++ +++ n  +  ++ D ++ ++a++++s++ ++ l+a+    +F++l++++s+    ++++++r
  EHT98787.1 247 VTDLPNRALFLALLEQFIRAR-R--HAFSVMVIRIETLQEANGVLSDEQRDTLMLTLAEKIRSTIDDQTLLAQTATSDFVLLMKSASNP--FRAMRLAR 340
                 7**********9999988766.4..79************************************************************87..******** PP

                 HHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 105 rllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 +l+ +l++pv+l + +l  ++siG al++++e++ ++e+l++A +a+++a+++g+n+
  EHT98787.1 341 NLMIRLNQPVTLHQLQLRPNASIGLALSEEDETTGANEMLDRATSAMMSARRQGKNQ 397
                 *****************************9*************************96 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.42
                 HCCS-T.TSEEEEESSSEEEEEEE CS
       GGDEF  67 ssslrk.sdlvaRlggdeFaillp 89 
                 ++ l + +d++  l++++Fa+ l+
  EHT98787.1 410 QKRLTQeHDILQGLHDEQFALYLQ 433
                 444444499999999999999886 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.3e-10   4.6e-07       2      51 ..     178     231 ..     177     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.3e-10
                 HHHTTHHHHHHHHHHHHHHTTT.BTSST..CCT.TSSSHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaG.dldtr..lpv.sgrDEiGeLarafNaMldrL 51 
                 + r +++PLrr++r ++++     l++   +p  +++DEiG+L+r++N+ ++ L
  EHT98787.1 178 INRLVVHPLRRISREIQELPPQaILTHKlsVPAdHRDDEIGMLIRSYNRNQQVL 231
                 789*****************65455555887777***************99866 PP

>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00021      0.76       6      54 ..      43      91 ..      39     127 .. 0.84
   2 ?   -2.2   0.0       1.3   4.8e+03      73      99 ..     194     220 ..     188     245 .. 0.71
   3 ?    1.7   0.0     0.084     3e+02      49      71 ..     481     503 ..     463     537 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
      CHASE8  6 qqnlellarilaenveAAlvFeDaaaAreiLaaLkaepeiaaaavydae 54
                 q++e +a ++ + ++ A++  D  +A++iL++Lk  + +++a v+  +
  EHT98787.1 43 AQQMENIAHTVRQPLSEAVLKADIPQAERILNSLKPAGILSRADVVLPN 91
                578999*************************************999765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
      CHASE8  73 eallaslllpepvespilhdgeriGtv 99 
                 ++l+ + +l+ +  +p  h  ++iG +
  EHT98787.1 194 QELPPQAILTHKLSVPADHRDDEIGML 220
                 556666666666666777777777765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.084
      CHASE8  49 avydaegkllaeyaresseakee 71 
                 +v+++  ++la ++r++   + +
  EHT98787.1 481 WVFEEACRILAGWQRHGVRVPLS 503
                 6999999*********9988733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4761.65
//
Query:       EHT98788.1  [L=427]
Description: C4-dicarboxylic acid, orotate and citrate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-112  375.2  42.3   4.1e-112  375.1  42.3    1.0  1  SDF       Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.1  42.3  2.3e-116  4.1e-112       1     390 []       7     400 ..       7     400 .. 0.98

  Alignments for each domain:
  == domain 1  score: 375.1 bits;  conditional E-value: 2.3e-116
         SDF   1 LllqiliglvlGlviGllelvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilalllkpg... 96 
                 L++q+l+++++G+++G+  + ++l+++++plgd+f++l+km+i+P++f+++++gia+++++k++g+ g  +llyf +++++A+iigli++++++pg   
  EHT98788.1   7 LYFQVLVAIAIGVLLGH--FYPDLGTQMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTLALIIGLIVVNIVQPGtgm 103
                 789*************9..*****************************************************************************999 PP

         SDF  97 ...selaleassakeaekketdslldlilslipsnifealaegnvlavivfailfGialaalgekgepllkffeslnevvmkvvkivmklaPigvfali 192
                      + ++++ a  a+++e++ +  ++l++ip  ++ a+a+gn+l+v++fa+lfG+al +lg+ g  +++++es+++v++ +++++m+laPig f+++
  EHT98788.1 104 nvdPATLDAKAVAIYAQQAEQQGIVAFLLDVIPGSVIGAFASGNILQVLLFAVLFGFALHRLGNTGTLIFNVIESFSKVIFGIINMIMRLAPIGAFGAM 202
                 8874445555666677788999***************************************************************************** PP

         SDF 193 aslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpalltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlGatin 291
                 a +++++g+g+l++l+++++++y+++++++++vl l+++++++++++kf+ +i + ll+ ++T+SS+ +LP +l+++e+ lg+++s++++v+P+G+++n
  EHT98788.1 203 AFTIGKYGVGSLVQLGQLIICFYITCVLFVVVVLGLIARLFGGFSIFKFIAYIKEELLIVLGTSSSESALPRMLDKMER-LGCKKSVVGLVIPTGYSFN 300
                 *******************************************************************************.9****************** PP

         SDF 292 mdGtalyeavaaifiaqlfgvelslgqllllvlvatlasiGaagvPgaglvalllvlsalg.lpvegialilaidrllDmfrTavNvtGdavaalivak 389
                 +dGt++y+++aa+fiaq+++ ++++ ++++l++v++l+s Gaagv g+g+++l+++lsa+g lpv+g+alil+idr++  +r+++N +G+ va+++vak
  EHT98788.1 301 LDGTSIYLTMAAVFIAQATNAHMDIFHQVTLLVVLLLSSKGAAGVTGSGFIVLAATLSAVGhLPVAGLALILGIDRFMSEARALTNLVGNGVATVVVAK 399
                 *************************************************************9************************************9 PP

         SDF 390 l 390
                 +
  EHT98788.1 400 W 400
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3444.04
//
Query:       EHT98789.1  [L=502]
Description: putative zinc-dependent peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-16   60.8   0.0    3.1e-16   59.9   0.0    1.5  1  Peptidase_M16_C  Peptidase M16 inactive domain
    2.9e-06   27.3   0.0    6.8e-06   26.1   0.0    1.6  1  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.4e-20   3.1e-16       3     182 ..     201     377 ..     199     378 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.4e-20
                      -HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT.....C CS
  Peptidase_M16_C   3 tredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpsk.....e 91 
                      +  +lk+fy+++Y+p+ ++l++vG+vd     ++i+k f++l+ +    +  + + +t  +l   pv l      q  lsl + +p +     +
       EHT98789.1 201 DIAQLKSFYQQWYTPDAITLYVVGNVDSRSFSEQINKAFSSLEGK----RSSAAPVPTLSPLPHDPVNLVSGSGAQDRLSLVWDTPWQpirdsQ 290
                      5679***************************************75....3333333333466666666666666******************** PP

                      THTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
  Peptidase_M16_C  92 ndeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeeleraknq 182
                      n +++ + ++  + L         ++l +++  + +v+++ +  +    ++i++++ ++ +e+  +++ +el++++++gl++ee+++ ++q
       EHT98789.1 291 NLQRYWRGDLAREALFWH----VQRALSNSKAQGVQVGFDCRVLYQRAQCSINMDTRNDSLEQNMNLVARELAAVRDNGLPQEEFDALMAQ 377
                      ************999999....89999999999*******999999*****************************************9987 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   7.6e-10   6.8e-06       6     101 ..      51     152 ..      46     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 7.6e-10
                    E-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEE.....EEEEESSEEEEEEEEEGGG...HHHHHHHHHH CS
  Peptidase_M16   6 sdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgsl.....nAttsrentvYyvevlskd...lekaldvlad 93 
                    +  p+++  +++vv++GS+ e  ++ G +Hll ++a+   ++  + +  + l ++G           ts+++t Y ++++++    l++al+ la 
     EHT98789.1  51 QR-PSDRIELRMVVNTGSLVESAQQTGFSHLLSRLALVH-NTALDTNQQRALWQQGIDPqrplpPVITSYDYTQYNLSLPNNRpdlLKEALNWLAA 144
                    44.8889999***************************99.5555556678888888888778889*****************9999******9998 PP

                    HHHSBTTS CS
  Peptidase_M16  94 vfkaplle 101
                    +  + +++
     EHT98789.1 145 TAGDMAIT 152
                    76666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4104.85
//
Query:       EHT98790.1  [L=290]
Description: xylanase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   51.1   0.1    8.7e-11   41.7   0.0    2.6  3  Peptidase_S9   Prolyl oligopeptidase family
      1e-11   45.1   0.3    2.4e-10   40.7   0.3    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold
      4e-05   23.3   0.0      0.004   16.7   0.0    2.1  2  DLH            Dienelactone hydrolase family
    0.00058   19.2   0.3       0.38   10.0   0.1    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
     0.0026   17.7   0.0        1.1    9.1   0.0    2.1  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
       0.02   14.7   0.0        2.7    7.8   0.0    2.1  2  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.024   15.2   4.7       0.13   12.8   4.7    1.9  1  Abhydrolase_6  Alpha/beta hydrolase family
        0.2   11.3   0.0       0.49   10.0   0.0    1.6  1  FSH1           Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   3.3e+03     120     143 ..      19      44 ..       7      50 .. 0.72
   2 !    6.7   0.0    0.0019       4.4      39      83 ..     106     152 ..      82     161 .. 0.82
   3 !   41.7   0.0   3.9e-14   8.7e-11     124     189 ..     203     266 ..     169     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                   -TTTCHHHHHHHHHH-CGGG--..-- CS
  Peptidase_S9 120 npeeneegykelspyspldnvk..ay 143
                   +++ +++  +++++y+p+d+v+  + 
    EHT98790.1  19 DSRAQPQIVDTAKEYEPYDRVAtgVR 44 
                   45567888899999999999875544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
                   GGGHHHHHHHHHHHHHHHHTT..S--GGGEEEEEETHHHHHHHHHHH CS
  Peptidase_S9  39 klgqnefdDfiaaaealakeg..yvdserlaitGgSyGGyltgaaln 83 
                   +  ++ ++D   a++ l ++     + + ++++G S+GG +t+ + +
    EHT98790.1 106 EGPDAPLADAQRAVRVLRERAqrGLNGKYIVMMGFSAGGHVTASLGT 152
                   55567788899999999777655789999***********9987655 PP

  == domain 3  score: 41.7 bits;  conditional E-value: 3.9e-14
                   CHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 124 neegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                   +++  ++ s  + ++   + pp+Llih+  Dd vp+++++ +++aL++++++v+++ + + gHg+g
    EHT98790.1 203 DQKTIDAYSLETRVHS--QVPPTLLIHAADDDDVPVNNSMVFFSALREHNVPVEVHFYQKGGHGFG 266
                   3343444455555555..*********************************************986 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.3   1.1e-13   2.4e-10       6     209 ..      66     265 ..      61     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-13
                    -STTTS--TTTTHHHHHHHHHHHTSEEEEEE---T..TTS-TT.HHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT-- CS
  Abhydrolase_3   6 GGGfvlgsldthdalcrelakelgavvvsvdYrlA..PehpfP.aavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegep 98 
                    GGG+    +d + + ++ +   +g++   + Yrl     h  P a++ da +a+r l+e+a + g++ + iv++G SaGG+ +a +  r+ ++   
     EHT98790.1  66 GGGYQRIMIDREGSALATFFTSMGYTLAVMTYRLPydGHHEGPdAPLADAQRAVRVLRERA-QRGLNGKYIVMMGFSAGGHVTASLGTRFGEKL-Y 159
                    777777777777777777888888888888999984445666636799***********95.899***************************94.3 PP

                    -...........EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEET..T-TTHH CS
  Abhydrolase_3  99 k...........vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvae..fDplrd 181
                    +           + ++vl+yPv  + r         +e +++ ll          ++ +++++d   ++       s++pptl++ a    D+  +
     EHT98790.1 160 PvqdsaenlsprPDAMVLVYPVISM-RD--GLA---HEGSRTRLL---------GAWPDQKTIDAYSLETR---VHSQVPPTLLIHAAddDDVPVN 237
                    347888999999*********9855.22..222...222233333.........33333444444333322...35789**99998862257999* PP

                    HHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 182 egeayaerlraagvevelieyegmvHgf 209
                    ++  +  +lr+++v+ve++ y++  Hgf
     EHT98790.1 238 NSMVFFSALREHNVPVEVHFYQKGGHGF 265
                    ***************************9 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.011        24      79     118 ..     112     153 ..     103     160 .. 0.74
   2 !   16.7   0.0   1.8e-06     0.004     146     190 ..     222     266 ..     201     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
         DLH  79 lddlkaavaylksvpe..vstkkvgvvGfCmGGalalllaae 118
                 l+d++ av+ l+++ +   + k ++++Gf  GG ++  l ++
  EHT98790.1 112 LADAQRAVRVLRERAQrgLNGKYIVMMGFSAGGHVTASLGTR 153
                 56667777777765541157899***********99887766 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.8e-06
         DLH 146 pilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFa 190
                 p l +++  D  +p ++   + +al+++nv++e++ Y+  gH+F 
  EHT98790.1 222 PTLLIHAADDDDVPVNNSMVFFSALREHNVPVEVHFYQKGGHGFG 266
                 5566666677778888899*************************5 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00017      0.38      47      96 ..     100     153 ..      66     191 .. 0.79
   2 !    7.4   0.0     0.001       2.3     188     232 ..     217     263 ..     205     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
  Hydrolase_4  47 gkrghvpsfddyvdDlaafvekvkeehpel....plfllGhSmGGliallyllr 96 
                  +  gh +  d  ++D++ +v+ ++e+ ++      ++++G S GG +++++++r
   EHT98790.1 100 PYDGHHEGPDAPLADAQRAVRVLRERAQRGlngkYIVMMGFSAGGHVTASLGTR 153
                  6789999999999*******9999777665677799*************99876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyH 232
                  ++   P+ll+h+++D  v+ ++s  ++ +l+     ++++ y+++ H
   EHT98790.1 217 HSQVPPTLLIHAADDDDVPVNNSMVFFSALREHnvPVEVHFYQKGGH 263
                  444469************************99866689999999999 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0029       6.6      16      44 ..     127     155 ..     115     161 .. 0.81
   2 !    9.1   0.0   0.00051       1.1     117     162 ..     222     264 ..     196     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0029
                 STTB--SSEEEEEETHHHHHHHHHHHHSS CS
      BAAT_C  16 hpkvkkdkigllGiSkGgelalllasflk 44 
                 +  ++++ i ++G S Gg ++ +l++++ 
  EHT98790.1 127 QRGLNGKYIVMMGFSAGGHVTASLGTRFG 155
                 45678999******************996 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00051
                 EEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S- CS
      BAAT_C 117 pillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHl 162
                 p ll+ + dD  +p ++s       L++++ +  v+++ Y+k+GH 
  EHT98790.1 222 PTLLIHAADDDDVPVNNSM-VFFSALREHNVP--VEVHFYQKGGHG 264
                 6899999999999999998.88899**99988..99999******6 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0012       2.7      93     122 ..     121     150 ..     111     160 .. 0.83
   2 ?    4.8   0.0    0.0096        22     152     200 ..     219     264 ..     207     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                    HHHHHHHTT--GGGEEEEEETHHHHHHHHH CS
  Abhydrolase_2  93 lidaelkkgipssriiigGFSqGaalalyl 122
                    ++++  + g++ + i+++GFS G+ ++  l
     EHT98790.1 121 VLRERAQRGLNGKYIVMMGFSAGGHVTASL 150
                    6788889999**************998655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0096
                    GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS CS
  Abhydrolase_2 152 avtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHs 200
                    +v+   p l+iH  +D  vp+  +  +  +l++ +  ve + y++++H 
     EHT98790.1 219 QVP---PTLLIHAADDDDVPVNNSMVFFSALREHNVPVEVHFYQKGGHG 264
                    444...899**************************9********99996 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.7   5.9e-05      0.13       1     182 [.      61     233 ..      61     281 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
                    EEEE--GC................GCHHHHHHHHCCTCEEEEE--T..TSTS-GGCS--HHHCHHHHHHHCCTT.....TTSEEEEEETCHHHHHH CS
  Abhydrolase_6   1 vlllHGagss...........assWlvapLaallaagvhvlapDlp..GhGrsdpppldledladlaalldelaa...gggpvvlvGHSlGGalal 80 
                    +l+++G+g+            a+   ++++    +   +v ++ lp  Gh   ++p+  l+d+++ +++l+e a+   +g+ +v +G S GG++ +
     EHT98790.1  61 LLVAPGGGYQrimidregsalATF--FTSM----GYTLAVMTYRLPydGH--HEGPDAPLADAQRAVRVLRERAQrglNGKYIVMMGFSAGGHVTA 148
                    577789886555555442222222..2344....4446889999995544..6888888888777788888888887777778**********766 PP

                    HHHHCC..EE....EEES-..----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHT.TCCHHTT-TT CS
  Abhydrolase_6  81 aaaplalvvg....vlldppptalpagllaaalelllallallrllawlsreplprlfladedadaawrarlarlaallaglgll.paaawadlpv 171
                        l  ++g     + d+   a  ++ +++a+ l+ ++++ +             ++ +     +  r+rl ++ + ++  +++   +++    +
     EHT98790.1 149 S---LGTRFGeklyPVQDS---AENLSPRPDAMVLVYPVISMRD------------GLAH-----EGSRTRLLGAWPDQKTIDAYsLETRVHSQVP 221
                    6...554444433344444...2222222222222222222222............2222.....2222222222222222221101223333333 PP

                    GCEEE.CTT-CH CS
  Abhydrolase_6 172 pllvl.ggeDpl 182
                    p+l++ +++D+ 
     EHT98790.1 222 PTLLIhAADDDD 233
                    332222333333 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022      0.49      89     194 ..     118     256 ..     100     265 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00022
        FSH1  89 sldavkdyike..ngpfdGiiGFSqGaalaallaslleellkea..................shpslkfailvsGfkleepk................. 150
                 +++++++  ++  ng +   +GFS G++++a l + + e+l                                   ++++                   
  EHT98790.1 118 AVRVLRERAQRglNGKYIVMMGFSAGGHVTASLGTRFGEKLYPVqdsaenlsprpdamvlvyP-----------VISMRDGLahegsrtrllgawpdqk 205
                 4455555555466899*****************999988776556766665433333333221...........2332222223333344444444444 PP

        FSH1 151 .yeeyy.eedki...qtptLhvlGelDtvvdeerseaLaeafkns...skvl 194
                   + +y  e+++     ptL ++  +D  v+ ++s+ +  a +++    +v+
  EHT98790.1 206 tID-AYsLETRVhsqVPPTLLIHAADDDDVPVNNSMVFFSALREHnvpVEVH 256
                 322.232333333324468888888888888888887777777766654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2150.24
//
Query:       EHT98791.1  [L=310]
Description: ketodeoxygluconokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-66  223.9   0.0    3.1e-66  223.7   0.0    1.0  1  PfkB             pfkB family carbohydrate kinase
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.33   10.9   0.0    1.6  2  YpsA             YspA SLOG family
       0.19   10.6   0.0        6.2    5.6   0.0    2.1  2  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.7   0.0   5.2e-70   3.1e-66       3     298 ..       5     304 ..       3     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 223.7 bits;  conditional E-value: 5.2e-70
                 EEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT....-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEE CS
        PfkB   3 kvvviGealidliavseklegelvevktveksaGGagaNvAvalarlg....advafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivv 97 
                 k+++iGe++i+l+++ e          ++++++GG+++N+Av+lar+     ++v++++a+G D+f++++++ +++e+v+t+ +++ e++ +gl++i +
  EHT98791.1   5 KIAIIGECMIELSEKGE----------NLKRGFGGDTLNTAVYLARQVsqqdVRVDYVTALGIDPFSAEMMTRWQAENVNTALIQRLENKMPGLYMIQT 93 
                 899*****999999855..........5************************9********************************************** PP

                 TTTSEEEEEEEEGGGGGHHHHHHH...HHHHHHGCTSEEEEES....EECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHH...HHHHHHHHHCTE CS
        PfkB  98 dedgertivfnrgaaadltkeele...ededlleeadllyisg....llsselpeavleelaeaaknggt..fdpnlldplgaq...fkeallellala 184
                 d  ger++ ++r++aa+ ++ +     + +++l++ d+ly+sg    +l+++++ +++++la+++ ngg+  fd+n++++l+++   +++a++++l+ +
  EHT98791.1  94 DDRGERSFWYWRSDAAARYWLDGPgadDICQQLKHYDYLYLSGislaILPDDSRARLMQLLADCRANGGKviFDNNYRPRLWKDkvtTRQAYQTMLENT 192
                 *77*****************76669999*********************************************************************** PP

                 SEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE...SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHH CS
        PfkB 185 dllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpav..pkvkvvDttGAGDsfvggflaallegksleealr 280
                 d ++++ ++  +l+ge+  ++e+++a++     +g+k vv+++G+e +l++   +   +vp+v  pk+k+vDtt+AGDsf +g+la  l g++ eea+r
  EHT98791.1 193 DMAFLTLDDEHQLWGEQ--SVEDVIARARD---AGVKEVVIKRGAESCLIAFeDQPLAEVPSValPKEKIVDTTAAGDSFSAGYLARRLVGATTEEAAR 286
                 *****************..*********99...9**************99875454556666666********************************** PP

                 HHHHHHHHHHTSSSSSTC CS
        PfkB 281 fanavAalvvqkkgaias 298
                 +++ +A+ v+q++gai +
  EHT98791.1 287 RGHLTASTVIQYRGAIIP 304
                 ***************986 PP

>> YpsA  YspA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2     7e+03      48      64 ..      54      70 ..      42      81 .. 0.63
   2 ?   10.9   0.0   5.5e-05      0.33     108     144 ..     173     209 ..     145     229 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
                -TTHHHHHHHHHHTTTT CS
        YpsA 48 qlGvelwaaevvleLke 64
                +lG++ ++ae++ + ++
  EHT98791.1 54 ALGIDPFSAEMMTRWQA 70
                45666666665555443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.5e-05
                 SB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHH CS
        YpsA 108 epYespsqlrnknefllektdglllvYDeekegkpky 144
                 + ++++   r+  +++le+td+++l  D+e++   + 
  EHT98791.1 173 RLWKDKVTTRQAYQTMLENTDMAFLTLDDEHQLWGEQ 209
                 5567888899********************9755555 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.001       6.2     103     155 ..      34      88 ..      27     101 .. 0.77
   2 ?    2.8   0.0    0.0078        46      53     106 ..     112     167 ..     107     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.001
  Chlorophyllase2 103 tafalalgkak..tslkfsaligvdPvagaskskqtepkiLtyepesfnlkmpvl 155
                      ta+ la + ++  +++++ +++g+dP+++  +++  + ++ t   + ++ kmp l
       EHT98791.1  34 TAVYLARQVSQqdVRVDYVTALGIDPFSAEMMTRWQAENVNTALIQRLENKMPGL 88 
                      5666666655522555999*********988888888999999999999999954 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0078
  Chlorophyllase2  53 ykvaeadakeiksaakvlnWlakg.Le.svlpeevepdlsklalsgHSrGgktafa 106
                      y+++++ a++i +  k  ++l    ++  +lp++ ++ l +l   +  +Ggk++f+
       EHT98791.1 112 YWLDGPGADDICQQLKHYDYLYLSgISlAILPDDSRARLMQLLADCRANGGKVIFD 167
                      66778888999999999998875544314899**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2440.64
//
Query:       EHT98792.1  [L=257]
Description: EAL domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   96.9   0.0    1.6e-27   96.6   0.0    1.1  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   8.7e-32   1.6e-27       9     238 .]      27     243 ..      19     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 8.7e-32
                 CTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTC..EE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCH.T.T--EEEEEE--CHHCC-CCHH CS
         EAL   9 enkelalyyQPvvdlktgkvvgleallrwqhpdgg..lispeeflplaerlgllaeldrwvleqalqdlrrlaeq.l.dadiklsinlspasladeefl 103
                 ++ +  + +QP++   +g+++++e l+   hp +    +spe++++ +e    +++ld  v+++ l  l+++ e+ + d+++  s+n+++ sl+  +  
  EHT98792.1  27 RQCQRQYTFQPIY-KVSGRLLAIELLTAVMHPSEPekKLSPEAYFAELEI---AERLD--VVQEQLTWLSQW-EAfFaDNEVMASVNIDGPSLSLIQHH 118
                 67788999*****.9*****************987444599999998888...55555..67777788999*.68788999999******999665555 PP

                 HHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH..HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHH CS
         EAL 104 eelrellkqsgpspsrLvleitesellarlealq.eevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkaliala 201
                   +r    + + +  ++ +e+te+ +      l  ee +a+  +lG  ++lddfg+g +++s l++l+ d+iKl r+l   l  ++e+++l+ +l++l 
  EHT98792.1 119 LPIR----SLITRLPWVRFELTEHHV------LPqEEMVAQMPELG-PLWLDDFGSGMANFSALTELKYDYIKLSRELFILLCASGEGRTLFPMLLSLI 206
                 5555....445566669*******55......33345677777788.599*****************************77777*************** PP

                 CCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 202 kelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 +++   v++egVet++++e++++  +  +QGy++s+p
  EHT98792.1 207 NRYCNGVIVEGVETQDEWEQVKASPAIAAQGYFFSRP 243
                 ************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1975.98
//
Query:       EHT98793.1  [L=686]
Description: putative outer membrane biogenesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-150  500.4   0.0     1e-149  500.2   0.0    1.0  1  AsmA      AsmA family
    5.9e-15   55.4  11.6    6.6e-15   55.3   5.6    3.0  3  AsmA_2    AsmA-like C-terminal region
  ------ inclusion threshold ------
      0.037   14.2   3.8        1.6    8.9   0.3    4.3  6  DUF748    Domain of Unknown Function (DUF748)


Domain annotation for each model (and alignments):
>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.2   0.0  1.8e-153    1e-149       1     607 [.       1     580 [.       1     581 [. 0.99

  Alignments for each domain:
  == domain 1  score: 500.2 bits;  conditional E-value: 1.8e-153
        AsmA   1 MkkalkilllilivLlLLlvlliaiialfdpnnykptlqqkvkeatnrplaiegdig............rsllPwptlsLsdiklaspegakkpelvsv 87 
                 M++a+ki+ +i  +L+L++v+ +++ia+fd+n++kpt+++kv++++nrp+ai+gd+g            rs++P p+l+++di l++p++++ ++++++
  EHT98793.1   1 MSRAGKIVSWIAGILVLVIVVVVIVIATFDWNRLKPTINKKVSAELNRPFAIRGDLGiawqrqrdepgwRSFIPLPHLHAEDIMLGNPPDIPDVTMIHL 99 
                 99************************************************************************************************* PP

        AsmA  88 eqveisLsplpLlrkqieiasikldgpslslerlkdgkknwqeliqnnqnaasnantqqkqptqtraalsldigeikvsngkvtyddkasekilndidl 186
                 ++v+++L+pl+Ll kq+ i++ikl++ +++l+  +d+k+nw+++++ +++++ n         ++++a+s+++++i +++g++ y d  +++     d+
  EHT98793.1 100 QRVDATLAPLALLHKQVFIPWIKLQQSDARLIQTADKKNNWTFTLAESDSKDDN---------APPSAWSFRLDNILFDQGTLLYRDAVNKA-----DV 184
                 ******************************************************.........9****************************.....** PP

        AsmA 187 elqvsalkgpslawrkikisGkleqdnqsfgslvnvkvnkgelsgealqnstktlgmkllqdlsspiyeinslklesnqlaldgtlitnlnlskedlrL 285
                  ++ ++l++p +++++i++    +  ++ +g++v+++ ++g++++e+l++++k++gm+ l+++ +p++ +++++ + ++++l g + ++lnl+ +d+rL
  EHT98793.1 185 TVKLNSLGKP-VPFAQIAGG---DDSQKRAGDFVFGWQAEGRFNNEKLTGQGKLGGMLSLRSQTTPFPVQADVRNGTTRVQLSGGVQDPLNLGGLDVRL 279
                 *********9.*****9886...99999999******************************************************************** PP

        AsmA 286 kasglksilaalslkadeldslanqaeltgvnlprtpqaitlqelslsaktensqvsivLknltlnldklsvngkkiviksdinganqlpkaqarpklr 384
                 ++sg               d lan++ ltgv lp+tp+++t+++l ++++ ++ +v+          +++++ng   +++sdi+g++++ + ++rpkl 
  EHT98793.1 280 RFSG---------------DTLANLYGLTGVLLPDTPPYETDGRLIAKFTGKDGSVF----------RYQAFNGH--IGDSDIHGSLTYSQGKPRPKLV 351
                 ****...............9*************************************..........********..********************** PP

        AsmA 385 gkLsspeLdldrlqpikaa....iatkskaneqkasglsadkknkplkeerillgvwqeieadlsanidkvty.ssllisdlkaklrlegGvlqLsrlk 478
                 g+L s++L++++l+p++++     ++k++++++k +++s+++++ +l+ +++ +  w+ ++ad++++++++++ +sl++sdl+++l+l++G l L++l+
  EHT98793.1 352 GELRSDQLRMADLGPLIGVdsgkGSEKTQQAKAKHGEKSTQPADRVLPHDQFDTKNWSVMDADVKFSGKRIEHsNSLPLSDLYTHLQLDNGNLLLDPLR 450
                 *************************************************************************************************** PP

        AsmA 479 aglygGeleakgqldlskksatvrlklnaknlplkrLladlskikkldGlldididltgsGnsvatlinnLnGqlklnlnnGals.......Glnlnqi 570
                 +g++gG+l+++++l+++  ++  r++++a+ l l +L+++++ ++ + G l++d++ltg Gnsva l+  +nGqlkl++n+G++s       Gln++++
  EHT98793.1 451 FGMAGGNLNSTIRLEGDRSPMRGRADIHARKLRLRQLFPNVQAMQNSLGQLNGDASLTGTGNSVADLLATSNGQLKLLMNDGLISrnlmeiaGLNVGNY 549
                 *************************************************************************************************** PP

        AsmA 571 lvagiaaltssfgtkstpfknlavslnlkkGvltlnd 607
                 lv       + fg+++++++++ ++l+l++G +t+n 
  EHT98793.1 550 LV------GKLFGDDEVRINCAVTDLKLQNGLATPNL 580
                 **......*************************9985 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.039   2.3e+02      60     107 ..     221     269 ..     206     292 .. 0.77
   2 ?    0.0   0.0     0.085   5.1e+02      10      55 ..     315     359 ..     307     364 .. 0.78
   3 !   55.3   5.6   1.1e-18   6.6e-15       3     179 ..     432     608 ..     430     612 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.039
      AsmA_2  60 krlglaevl.gGkgslelnlswqgaplspdlssLsGdlsleledgqilg 107
                  r++ ++   +Gk+   l+l+ q  p+  + +  +G+ +++l  g    
  EHT98793.1 221 GRFNNEKLTgQGKLGGMLSLRSQTTPFPVQADVRNGTTRVQLSGGVQDP 269
                 57787888888999999999999999999999999**999999886555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.085
      AsmA_2  10 lkde.glrldnlrlrspggklsgsgswstkggaartnldlkldgvdl 55 
                  kd+   r + +++ +++  + gs ++s+++  +r +l ++l++++l
  EHT98793.1 315 GKDGsVFRYQAFNGHIGDSDIHGSLTYSQGK--PRPKLVGELRSDQL 359
                 5554478899999***************975..67788888888776 PP

  == domain 3  score: 55.3 bits;  conditional E-value: 1.1e-18
      AsmA_2   3 nvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevlgGkgslelnlswqgaplspdlssLsGdlslele 101
                 ++  +l+l++++l ld lr+ + gg+l+ +  + ++   +r + d   +  +l +l+ +++ +++  G+++ +++l+++g++ + +l++ +G+l+l ++
  EHT98793.1 432 DLYTHLQLDNGNLLLDPLRFGMAGGNLNSTIRLEGDRSPMRGRADIHARKLRLRQLFPNVQAMQNSLGQLNGDASLTGTGNSVADLLATSNGQLKLLMN 530
                 5566899****************************87778*********************************************************** PP

      AsmA_2 102 dgqilgvsll...rdlgllk..ltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvv 179
                 dg i+  + l   ++l   +    l  +   ++ + ++   ++++++nG++t + f +++ +a ++v+G+++++te+ldl v+
  EHT98793.1 531 DGLISR-N-LmeiAGL---NvgNYLVGKLFGDDEVRINCAVTDLKLQNGLATPNLFVFDTENAVINVTGNANFATERLDLSVN 608
                 ****99.3.2223333...1334566677777799*********************************************997 PP

>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3   0.00027       1.6       1      41 [.     159     199 ..     159     264 .. 0.61
   2 ?    1.3   0.1     0.057   3.4e+02      35      82 ..     232     282 ..     229     290 .. 0.71
   3 ?   -3.3   0.0       1.6   9.4e+03      63      91 ..     334     366 ..     326     369 .. 0.64
   4 ?    1.9   0.0     0.037   2.2e+02      74     113 ..     412     452 ..     406     495 .. 0.76
   5 ?   -1.1   0.0      0.33   1.9e+03      29      80 ..     476     526 ..     466     528 .. 0.63
   6 ?   -3.7   0.0       2.1   1.2e+04      60      79 ..     588     607 ..     581     614 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00027
      DUF748   1 wrvsidrlaltdgsvafaDrslsppfkltlselnltlsnls 41 
                 w++++d++ +++g++ ++D+  ++ ++++l+ l+  +++ +
  EHT98793.1 159 WSFRLDNILFDQGTLLYRDAVNKADVTVKLNSLGKPVPFAQ 199
                 99******************9999******99998776654 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.057
      DUF748  35 ltlsnlsslpeqpadvelsgavnkg.gplqisGtln.plplase.lelslk 82 
                 ++l ++ sl +q++++ +++ v +g  ++q+sG ++ pl+l    ++l+++
  EHT98793.1 232 GKLGGMLSLRSQTTPFPVQADVRNGtTRVQLSGGVQdPLNLGGLdVRLRFS 282
                 566666678889999999999988879999999998655533323555555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.6
      DUF748  63 qisGtlnplplase....lelslkgldLaplsp 91 
                 +i+G+l+ ++ + +    +el+ ++l +a+l p
  EHT98793.1 334 DIHGSLTYSQGKPRpklvGELRSDQLRMADLGP 366
                 566777766655544566777777777777666 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.037
      DUF748  74 aselelslkgldLaplspYlakylglelesGkLsl.dlryk 113
                 ++++++s k+++ ++  p +  y++l+l++G+L l  lr  
  EHT98793.1 412 DADVKFSGKRIEHSNSLPLSDLYTHLQLDNGNLLLdPLRFG 452
                 55667777889999999999999999999999988544444 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.33
      DUF748  29 tlselnltlsnlsslpeqpadvelsgavnkggplqisGtlnplplase.lels 80 
                 ++++ +l+l++l   p+ +a  +  g++n+ ++l+ +G+  ++ la++ ++l+
  EHT98793.1 476 DIHARKLRLRQL--FPNVQAMQNSLGQLNGDASLTGTGNSVADLLATSnGQLK 526
                 555556666666..344444445558888888888888888777666666665 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 2.1
      DUF748  60 gplqisGtlnplplaselel 79 
                 + ++++G++n++  +++l +
  EHT98793.1 588 AVINVTGNANFATERLDLSV 607
                 66777888777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4818.31
//
Query:       EHT98794.1  [L=93]
Description: peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   70.7   0.0    2.2e-19   70.2   0.0    1.2  1  Rotamase    PPIC-type PPIASE domain
    4.1e-19   69.2   0.0    4.7e-19   69.0   0.0    1.1  1  Rotamase_3  PPIC-type PPIASE domain
    1.2e-05   26.2   0.0    1.3e-05   26.0   0.0    1.1  1  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   3.6e-23   2.2e-19      19      95 ..      15      89 ..       2      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 3.6e-23
                HHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase 19 kakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95
                +a+a+ +le+lk+ge+ F++lA+k+S  ++s +ngGdlg++++g+++++f+kaaf+    +  +pv+t+fG+hiik+
  EHT98794.1 15 EAEAKVLLEKLKKGEN-FQQLAKKHS-ICPSGRNGGDLGEFRRGKMVAAFDKAAFTCPLLQPFGPVKTAFGYHIIKV 89
                689999**********.*********.************************************************98 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   7.8e-23   4.7e-19      37     113 ..      15      90 ..       2      93 .] 0.91

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 7.8e-23
  Rotamase_3  37 kakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvt 113
                 +a a  ll++lk+g++F++lAk+ S  p+ + nGG+lg f +g+mv +F++a+f+ +  +  ++vkt+fGyHiikv+
  EHT98794.1  15 EAEAKVLLEKLKKGENFQQLAKKHSICPS-GRNGGDLGEFRRGKMVAAFDKAAFTCPLLQPFGPVKTAFGYHIIKVL 90 
                 5567789*******************886.*********************************************97 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.2e-09   1.3e-05      27     105 ..       9      89 ..       2      93 .] 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.2e-09
  Rotamase_2  27 lavvkdqvaaeaalalakagaekdfaalakgnskkaadlg.....ifesasnlpeelakaafalkpgevsgpvetdngyyivkv 105
                 ++ vk +++a+  l+++k+g  ++f++lak+ s++++  +      f+  + + +++ kaaf+ +  +  gpv+t++gy+i+kv
  EHT98794.1   9 HILVKQEAEAKVLLEKLKKG--ENFQQLAKKHSICPSGRNggdlgEFRRGK-MVAAFDKAAFTCPLLQPFGPVKTAFGYHIIKV 89 
                 6789999*************..59**********96665555543555444.667****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 705.48
//
Query:       EHT98795.1  [L=673]
Description: DNA helicase and single-stranded DNA-dependent ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-75  252.5   1.7    7.5e-74  249.1   1.7    2.1  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
      6e-72  242.9   0.7    5.9e-71  239.7   0.1    2.4  2  UvrD_C           UvrD-like helicase C-terminal domain
    4.4e-36  124.4   0.0    8.2e-36  123.5   0.0    1.5  1  AAA_19           AAA domain
    2.7e-10   39.9   0.0      1e-09   38.1   0.0    1.9  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    3.1e-09   36.8   0.6    0.00036   20.3   0.1    2.4  2  AAA_30           AAA domain
      8e-07   29.0   0.4      0.022   14.5   0.0    3.8  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.035   13.7   0.0          3    7.4   0.0    3.0  3  AAA_12           AAA domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.1   1.7   2.9e-77   7.5e-74       1     314 [.       3     265 ..       3     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 249.1 bits;  conditional E-value: 2.9e-77
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln +q++a++ ++gp+lv+A+AGsGKT+v++++i++li+e+++++++i +vTFTnkA++E+keR++++l+ +e               ++ ++isT
     EHT98795.1   3 LNSSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKERVAQTLGRKE---------------ARGLMIST 83 
                    6899******************************************************************986...............89****** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +H ++++i+k+e+  +g+++nf+++d++d     q++llk+l      + l+ dk  l+                         +l  ++s++k++
     EHT98795.1  84 FHTLGLEIIKREYAALGMKSNFSLFDDQD-----QLALLKDLTS----QWLEEDKTLLQ-------------------------QLISTLSNWKND 145
                    *****************************.....9*****9996....33444555555.........................677899****** PP

                    TCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEE CS
  UvrD-helicase 193 qlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfm 288
                    +++p +  +   + s++++ +a+++  y +++k+ n lDf+dl++ ++ ll++n+e++e++++r++++l+DEyQDTn +Qy+++kll+ ++  +++
     EHT98795.1 146 LVDPPKAAA--LARSERDNVFAHCYALYDQHLKACNVLDFDDLILLPTLLLQRNQEVRERWQQRIRYLLVDEYQDTNTSQYELVKLLVGARARFTV 239
                    ******998..5799********************************************************************************* PP

                    EE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 289 vGDpkQsIYgFRgAdielflkkkkdf 314
                    vGD++QsIY++RgA+++++   ++df
     EHT98795.1 240 VGDDDQSIYSWRGARPQNLVLLNEDF 265
                    *******************9999988 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   3.5e+03     136     165 ..      56      84 ..      30     174 .. 0.57
   2 !  239.7   0.1   2.3e-74   5.9e-71       1     348 [.     271     613 ..     271     614 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 136 lkrlvlgigkatveriseelkklglsltDf 165
                 +++  ++++++ ++++    + +gl ++ f
  EHT98795.1  56 TNKASREMKERVAQTL-GRKEARGLMISTF 84 
                 4444444444444444.3333333333333 PP

  == domain 2  score: 239.7 bits;  conditional E-value: 2.3e-74
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekek...ktvekgekivvleaeteeeEaekiaatikall.ekneklediavLvRsnkdadkiskaLkke 95 
                 ++Le+NyRS++++lkaan +++n+ +      ek   ++   g +++vl+a++ee+Eae +  ++ a+  +++++++d+a+L+R+n++++ ++k L+++
  EHT98795.1 271 VKLEQNYRSSQRILKAANILIANNPHV----FEKhlfSELGIGSELKVLSANSEEHEAERVTGELIAHHfINKTQYKDYAILYRGNHQSRVFEKFLMQN 365
                 58*******************999999....55556899999*******************999999888***************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
      UvrD_C  96 gipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsltDfikedtleygeeFieliraleeknl..... 189
                 +ip+++ ++++fF+r+eikd+layl++l n++d+ a+ ri++++ ++ig+at++++    + + ++   +++         F   + +   ++      
  EHT98795.1 366 RIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPRREIGPATLQKL---GEWATIRSKSLFN-------ASFDVGLGQTLTGRGlehlq 454
                 ********************************************************...4444444444333.......33332222222222223333 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
      UvrD_C 190 ..elllkkiektaeerqalvskyadlfkelaeklaelkekseskrkkeeklenlreLysllkelekkeeeeeveeklneileiatLseseleeskkk.. 284
                    + l++i + +e  ++ v++ +dl + +  + + ++   + k+  e +++n+++L++++ e+ + +   e+++ l+++++  tL+++ +++++++  
  EHT98795.1 455 rfTHWLNEIIQLSE--REPVNAVRDLIRGIDYESWLFETSGSPKA-AEMRMKNVNTLFQWMTEMLEGSDLDEPMT-LAQVVTRFTLRDMMERGESDDes 549
                 33334444443333..46777777888888777776666655555.445***************99888888887.************99888777779 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfisysk 348
                 ++++++T+H++KGlEF++Vfl+g+eeg +P++ s +e+++eEE+Rl YV+iTRA+k+L++++++
  EHT98795.1 550 DQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSIDENNVEEERRLAYVGITRAQKELTFTLCR 613
                 ***********************************************************99876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   3.2e-39   8.2e-36       1     144 [.       7     249 ..       7     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 3.2e-39
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal............... 77 
                 q++av ++  +++lv+aG+G+GKTrv++ ++a+l+++ g ++++i++v+ft++A +e++er+a+ +++       ++T+H l+l               
  EHT98795.1   7 QQRAV-EFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKERVAQTLGRkearglmISTFHTLGLeiikreyaalgmksn 104
                 899**.9*******************************************************8777778**************9*************** PP

      AAA_19  78 ............................................................................ldfddlltealelle.eaeeekk 99 
                                                                                             ldfddl+  +  ll+ ++e ++ 
  EHT98795.1 105 fslfddqdqlallkdltsqwleedktllqqlistlsnwkndlvdppkaaalarserdnvfahcyalydqhlkacnvLDFDDLILLPTLLLQrNQEVRER 203
                 ***********************************************************************************9999999974445556 PP

      AAA_19 100 lqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                  q++  +l+vDE+qd++  qy+L+k l+g ++++++vGD+dQ+iy+
  EHT98795.1 204 WQQRIrYLLVDEYQDTNTSQYELVKLLVGARARFTVVGDDDQSIYS 249
                 666667*************************99************8 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   3.9e-13     1e-09       4      50 ..     554     608 ..     552     610 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 3.9e-13
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgel........rrrlLYtavTRArekli 50 
                  +t h ++G+efp+V+++ +++   ++            rrl+Y+++TRA+++l+
  EHT98795.1 554 LMTLHASKGLEFPYVFLVGMEEGLLPHQSSidennveeERRLAYVGITRAQKELT 608
                 589**************999955555443356899999**************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.4e-07   0.00036       2      67 ..       3      68 ..       2      93 .. 0.81
   2 !   14.5   0.0   8.4e-06     0.022      77     167 ..     194     289 ..     172     301 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
      AAA_30  2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeelg 67
                ln++Q++ave ++t++   +++ ++AG+GKt +++   ++++++ g   +++++++ t+ka+++++e + 
  EHT98795.1  3 LNSSQQRAVE-FVTGP---CLVLAGAGSGKTRVITNKiAHLIRECGyqaRHIAAVTFTNKASREMKERVA 68
                899******6.77888...79999********998762666666698888899999**********8654 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8.4e-06
      AAA_30  77 lkrlk.grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRqkeseeraaal 167
                 l+r++  r+r++++ + l+vDE   ++t+q + l+k +  a a+  +vGD++Q     +G+  + lv       + ++++L++++R ++   +aa  
  EHT98795.1 194 LQRNQeVRERWQQRiRYLLVDEYQDTNTSQYE-LVKLLVGARARFTVVGDDDQSIYSWRGARPQNLVLLnedfPTLEVVKLEQNYRSSQRILKAANI 289
                 555557668999999************99985.77777777************87777777666665432222344888999999986655555544 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0027       6.9       2      21 ..      19      38 ..      18      78 .. 0.74
   2 ?   -1.6   0.0       0.7   1.8e+03      48      87 ..     166     199 ..     130     202 .. 0.47
   3 ?    3.2   0.0     0.025        63      61     105 ..     206     251 ..     196     266 .. 0.76
   4 !   14.5   0.0   8.4e-06     0.022     165     232 ..     524     609 ..     487     611 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     +v + +G+GK+++i + + +
       EHT98795.1 19 LVLAGAGSGKTRVITNKIAH 38
                     78899*********998877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.7
  Viral_helicase1  48 rtvdsflmalvkstkgkililDEylllhaGyilllaalsk 87 
                           + ++l   + +++l +D+  ll+    lll+++ +
       EHT98795.1 166 HCYALYDQHL---KACNVLDFDDLILLP---TLLLQRNQE 199
                      2223333444...44999999*999999...455666555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.025
  Viral_helicase1  61 tkgkililDEylllhaGyilllaalskak.lvilfGDplQipfhsr 105
                      ++ ++l++DEy+  ++ + +l+  l +a+  + ++GD  Q+ ++ r
       EHT98795.1 206 QRIRYLLVDEYQDTNTSQYELVKLLVGARaRFTVVGDDDQSIYSWR 251
                      45689**********999999555555542588999*999988755 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 8.4e-06
  Viral_helicase1 165 kvlvyltftqalkealgvr..........evttvhevqGltfdkVtlvllketdlelis.........esrenllvAlTRhrkslvi 232
                      ++++    t+ +++++++r          + +t h   Gl+f+ V lv  +e  l   +         e+r   +v++TR+ k+l++
       EHT98795.1 524 PMTLAQVVTRFTLRDMMERgesddesdqvQLMTLHASKGLEFPYVFLVGMEEGLLPH-QssidennveEERRLAYVGITRAQKELTF 609
                      466666677777777777777788888888******************886654333.247777888888**************998 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.099   2.5e+02      94     147 ..      31      83 ..      26      87 .. 0.84
   2 ?    0.6   0.0      0.15   3.8e+02      16      35 ..     269     288 ..     257     340 .. 0.88
   3 ?    7.4   0.0    0.0012         3     126     193 ..     535     608 ..     527     612 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.099
      AAA_12  94 lvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievnt 147
                 ++++ + +l++++  +  ++i+ +t+ ++  + +k++++++  +k+++ + ++t
  EHT98795.1  31 VITNKIAHLIRECGYQ-ARHIAAVTFTNKASREMKERVAQTLGRKEARGLMIST 83 
                 6677777888887777.7*********************999999888888887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
      AAA_12  16 kvvlLdtqYRmhpeIsrfps 35 
                 +vv L+++YR+ ++I++ ++
  EHT98795.1 269 EVVKLEQNYRSSQRILKAAN 288
                 6899***********98776 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0012
      AAA_12 126 llkkklkekeeeksekeievntvdgfQGrekdviilslVRsn........ekkeigflkderrlN.ValTRAkskli 193
                 +l++++++ e+++++ +++  t  +  G e  +++l              +      +++errl  V +TRA+++l 
  EHT98795.1 535 TLRDMMERGESDDESDQVQLMTLHASKGLEFPYVFLVGMEEGllphqssiD---ENNVEEERRLAyVGITRAQKELT 608
                 68899999999999999*******************999996776442222...346799999976*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 4156.17
//
Query:       EHT98796.1  [L=494]
Description: guanosine pentaphosphatase/exopolyphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-93  313.1   1.1    2.6e-93  312.6   1.1    1.1  1  Ppx-GppA  Ppx/GppA phosphatase family
     0.0086   15.1   0.1      0.016   14.2   0.1    1.5  1  DDR       Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.6   1.1   2.9e-97   2.6e-93       1     283 [.      21     301 ..      21     302 .. 0.99

  Alignments for each domain:
  == domain 1  score: 312.6 bits;  conditional E-value: 2.9e-97
                 EEEEECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHH CS
    Ppx-GppA   1 viarkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarl 99 
                 +++++++g++q++a+ krkvrLa+gl++ + l+ ea++r++++L++f e lq++++ ++rvVAT++lR a Na++Fl ++++ +g++v++isgeeEarl
  EHT98796.1  21 LVVSEVSGSIQTIAKIKRKVRLAAGLDSANHLSAEAMARGWQCLRLFSEQLQDIPPDQIRVVATATLRIAANAQVFLDKAQQILGCAVNVISGEEEARL 119
                 58999********************************************************************************************** PP

                 HHHHHHHHT.---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCH CS
    Ppx-GppA 100 iylgvvssl.lekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtis 197
                 iy+gv++++  +++r lv+DiGGGStEl++g++   s l+Sl++G+v+++erf+ d+ l +e+++ a++a++++l++++ e++k+  w+++vg+sgt++
  EHT98796.1 120 IYQGVAHTTgGSDQR-LVVDIGGGSTELATGDGSHASVLFSLQMGCVTWLERFFGDRHLAQENFDQAEQAAKAMLQPISAELRKQS-WQVCVGASGTVQ 216
                 *********888888.**********************************************************************.************ PP

                 HCHHHHHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHH CS
    Ppx-GppA 198 alaeltelhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslll 283
                 al+e++ ++g ++++it  +l++l ++++q+ k eel+++g++ eRa+v+++g+ il a++++l+i+++++++galrEG++y++l+
  EHT98796.1 217 ALQEIMVAQG-MDERITLSKLQQLKQRAIQCGKLEELEIEGLTLERALVFPSGLSILIAIFQELNIDSMTLAGGALREGLVYGMLH 301
                 **********.************************************************************************997 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.8e-06     0.016      98     149 ..      95     148 ..      79     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-06
         DDR  98 kiaeeleeelgvkvevggv..EaemAilGalttPGtekplailDlGaGstDaal 149
                    ++ ++ lg +v+v +   Ea    +G   t G + +  ++D+G+Gst+ a+
  EHT98796.1  95 VFLDKAQQILGCAVNVISGeeEARLIYQGVAHTTGGSDQRLVVDIGGGSTELAT 148
                 4456777888888887665115556678966566666666789*******9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3498.21
//
Query:       EHT98797.1  [L=430]
Description: ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-47  159.5   0.0      3e-45  154.1   0.0    2.1  2  DEAD           DEAD/DEAH box helicase
    2.2e-29  102.0   0.0      1e-28   99.9   0.0    2.0  2  Helicase_C     Helicase conserved C-terminal domain
    9.6e-06   25.7   0.0    1.6e-05   24.9   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
     0.0015   17.8   0.0     0.0022   17.3   0.0    1.2  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
     0.0062   16.8   0.2      0.022   15.1   0.2    1.9  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.0   8.5e-49     3e-45       1     174 [.      33     206 ..      33     208 .. 0.96
   2 ?    3.3   0.0     0.017        60      47     105 ..     256     314 ..     243     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 8.5e-49
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.....kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl 94 
                 t+iQa a+p +l+g+dv ++a+TG+GKT+afl   +++++++     ++ ++p+ali++PtreLa q++ +++ +   ++l++ l +gg+ +++ql++l
  EHT98797.1  33 TPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHpapegRQVNQPRALILAPTRELAVQIHADAEPLATSTGLKLGLAYGGDGYDKQLKVL 131
                 89**************************************99***999*************************************************** PP

                 HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD  95 dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvk 174
                 +ngvdi+vgt+grl+d  +++++nls ++++VlDEadr+ d gf ++i+ ++++++      +  qr  +++SATl+  v+
  EHT98797.1 132 ENGVDILVGTTGRLIDYAKQNHVNLSAIQVMVLDEADRMFDLGFIKDIRWLFRRMS------PaTQRLSMLFSATLSYRVR 206
                 *******************************************************4......4455669*******96655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.017
                 S-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH...TT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxx RF
        DEAD  47 gpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld...ng.vdivvgtp 105
                   +a+i + t+  +e++  +l   ++    rv l++g+va+++ l+ ld   +g +di+v+t 
  EHT98797.1 256 PDRAIIFANTKHRCEDIWGHLAADGH----RVGLLTGDVAQKKRLRILDdftKGdIDILVATD 314
                 44788888888888888888877777....7789999999999999996554558*****995 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.58   2.1e+03      14      62 ..      82     134 ..      68     148 .. 0.68
   2 !   99.9   0.0   2.9e-32     1e-28       2     111 .]     243     351 ..     242     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.58
                 TTTSEEEEEESSHH...HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C  14 eeggkilifvntid...rlek...vklllekkgikvavlhgelpqnereeileqf 62 
                 +++ ++li ++t++   +      ++ l ++ g+k    +g    ++++++le+ 
  EHT98797.1  82 VNQPRALILAPTRElavQ--IhadAEPLATSTGLKLGLAYGGDGYDKQLKVLENG 134
                 667788888888885332..13345555555577777777777777777777654 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 2.9e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k++ l  l+ +ee  ++++if+nt+ r+e+    l    g +v  l+g+  q++r++il++f kg++d+L+atdva+rG+ ip v++V+n+dlp++ ++
  EHT98797.1 243 KMRLLQTLV-EEEWPDRAIIFANTKHRCEDiWGHL-AADGHRVGLLTGDVAQKKRLRILDDFTKGDIDILVATDVAARGLHIPAVTHVFNYDLPDDRED 339
                 556666666.89999*************9654444.4669*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  EHT98797.1 340 YVHRIGRTGRAG 351
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.6e-09   1.6e-05      31     153 ..      53     179 ..      45     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.6e-09
                 ESTTSTHHHHHHHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH.. CS
      ResIII  31 maTGtGKTlvaaklierllkkgkee........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadsee 120
                 + TGtGKT+  +  + + l +++          ++l+l+p+++l  q   + + ++ ++  + g  + gd++++  +  ++  +ilv t+ +l      
  EHT98797.1  53 AQTGTGKTMAFLTSTFHHLLSHPAPegrqvnqpRALILAPTRELAVQIHADAEPLATSTGLKLGLAYGGDGYDKqLKVLENGVDILVGTTGRLIDYA-- 149
                 68********9555555555555556999******************************9999999*****99977788999***********9999.. PP

                 ......HHHTTT-SEEEEETGGGTTS.TTTHHH CS
      ResIII 121 eeeeseellrdrfdviiiDEaHrlgakkswrei 153
                    ++++   ++++v++ DEa r+ +  +++ i
  EHT98797.1 150 ---KQNHVNLSAIQVMVLDEADRMFDLGFIKDI 179
                 ...899***************999886555555 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     6e-07    0.0022      33     151 ..     231     350 ..     211     366 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6e-07
  ERCC3_RAD25_C  33 kkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkey.....akklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlP 123
                     k +l+y  n +k+r ++ L++  e+  D+ i+f++  +  +++     a   +  +++G++++++rl+il++f k  +++ ++   v+   + +P
     EHT98797.1 231 IKEELFYPSNEEKMRLLQTLVE--EEWPDRAIIFANTKHRCEDIwghlaADGHRVGLLTGDVAQKKRLRILDDFTKG-DIDILVATDVAARGLHIP 323
                    47789999************96..8999******99998887652222144556679*****************986.7999999*********** PP

  ERCC3_RAD25_C 124 eanvliqisshfgsrrqeaqrlGriLra 151
                      + +   +     r     r+Gr  ra
     EHT98797.1 324 AVTHVFNYDLP-DDREDYVHRIGRTGRA 350
                    99998876543.4566677777777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   6.1e-06     0.022      13     129 ..      54     199 ..      52     206 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.1e-06
      AAA_22  13 esGtGKTtllrr.lleqldeeakaee...............erpevvfvtlpsstsskdllrellralglelka....................erlss 75 
                 ++GtGKT+   +  ++ l  ++++e                e + +++ ++  + +s+ l  +l                                +++
  EHT98797.1  54 QTGTGKTMAFLTsTFHHLLSHPAPEGrqvnqpralilaptrELAVQIHADAEPLATSTGL--KLG--------LayggdgydkqlkvlengvdiLVGTT 142
                 789999986433133444456666668875444444433221122223333333344444..333........23344445588888888888888899 PP

      AAA_22  76 eell.ealeqalraravielliiDEaqhlrseealeeLrsllnl...srkgvqliLvG 129
                  +l+  a +++++  a  +++++DEa++++    ++++r l+     +++ +++++  
  EHT98797.1 143 GRLIdYAKQNHVNLSAI-QVMVLDEADRMFDLGFIKDIRWLFRRmspATQRLSMLFSA 199
                 99996666666666666.**********766555555544443333377777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3128.70
//
Query:       EHT98798.1  [L=110]
Description: thioredoxin 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-33  115.2   0.0    1.3e-33  115.0   0.0    1.0  1  Thioredoxin    Thioredoxin
    1.2e-07   32.1   0.1    9.8e-07   29.2   0.1    1.9  1  Thioredoxin_2  Thioredoxin-like domain
    1.2e-06   28.7   0.0    9.6e-05   22.6   0.0    2.2  2  Thioredoxin_8  Thioredoxin-like
    0.00031   20.6   0.0     0.0004   20.3   0.0    1.1  1  TraF           F plasmid transfer operon protein
    0.00051   19.8   0.0    0.00054   19.7   0.0    1.1  1  Thioredoxin_9  Thioredoxin
     0.0017   18.4   0.0     0.0021   18.1   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
     0.0019   17.6   0.0     0.0021   17.5   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0037   17.2   0.0     0.0053   16.7   0.0    1.4  1  AhpC-TSA       AhpC/TSA family
     0.0054   16.5   0.0      0.016   14.9   0.0    1.7  2  Redoxin        Redoxin
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.028   14.3   0.0    1.4  1  Thioredoxin_6  Thioredoxin-like domain
      0.044   14.0   0.0      0.073   13.3   0.0    1.5  1  Thioredoxin_7  Thioredoxin-like
      0.062   13.7   0.0      0.091   13.2   0.0    1.3  1  DUF836         Glutaredoxin-like domain (DUF836)
      0.098   12.4   0.0        2.8    7.7   0.0    2.0  2  DSBA           DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   9.6e-37   1.3e-33       2     102 ..       6     106 ..       5     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 9.6e-37
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  +++lt+++F+++v k++  +lv+F+A+wCg+Ck++aP l+++aee+ +k+++ak+++d+n+ +a ky+++giPtl+lfkng+ +++ +ga +k +l++
   EHT98798.1   6 IVHLTDDSFDTDVLKADGVILVDFWAEWCGPCKMIAPILDEVAEEYDGKLTIAKLNIDDNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 103
                  6899********************************************************************************************** PP

                  HHH CS
  Thioredoxin 100 flk 102
                  fl+
   EHT98798.1 104 FLN 106
                  997 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   7.1e-10   9.8e-07       7     109 .]      24     105 ..      18     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.1e-10
  Thioredoxin_2   7 pvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyvp 101
                     +lv+f++++C+ Ck +   l+e+    +      ++ +  ++  +i+ ++               a kyg+rg Pt++ f +g+ ++a+ +G+++
     EHT98798.1  24 VILVDFWAEWCGPCKMIAPILDEV---AEE-----YDGKLTIAKLNIDDNPGT-------------APKYGIRGIPTLLlFKNGE-VAATKVGALS 97 
                    689*************88877777...666.....788877777777766665.............7**********66488888.999******* PP

  Thioredoxin_2 102 aeeleall 109
                    + +l++ l
     EHT98798.1  98 KGQLKEFL 105
                    *9999876 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.9e-08   9.6e-05       3      45 ..      24      64 ..      22      68 .. 0.89
   2 ?    4.2   0.0     0.039        54      77      92 ..      71      85 ..      64      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.9e-08
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45
                   v+l+ f+a+wc pck + p l+e+ e++    k+ i  +++d 
     EHT98798.1 24 VILVDFWAEWCGPCKMIAPILDEVAEEYD--GKLTIAKLNIDD 64
                   799*************************8..788887777775 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.039
                   -S--TT-SEEEEE-TT CS
  Thioredoxin_8 77 kynvkaiPtlvvldkn 92
                   ky++ +iPtl++ + n
     EHT98798.1 71 KYGIRGIPTLLLFK-N 85
                   8********88765.4 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.9e-07    0.0004     133     221 ..      26     103 ..      19     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.9e-07
        TraF 133 LlfFyrgkcpyceaqapilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkvvpvaaGllsldelee 221
                 L+ F ++ c+ c++ apil+++a++y  +l++   ++d++p   ++          ++g++ +P+l+l++    +v++  +G+ls  +l+e
  EHT98798.1  26 LVDFWAEWCGPCKMIAPILDEVAEEYdgKLTIAKLNIDDNPG--TAP---------KYGIRGIPTLLLFKNG--EVAATKVGALSKGQLKE 103
                 55688999******************7779999999999998..334.........6************988..89999999999999876 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.9e-07   0.00054      48     108 ..      29      87 ..       5     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.9e-07
                    E--TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT- CS
  Thioredoxin_9  48 ltedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqyltngaraiPtliildeeg 108
                    + ++wCg + ++ P+l+++a e+  ++++  l  d+n+ +  +y   g r iPtl++++++ 
     EHT98798.1  29 FWAEWCGPCKMIAPILDEVAeEYDGKLTIAKLNIDDNPGTAPKY---GIRGIPTLLLFKNGE 87 
                    5689***************944567999999*************...88******9998763 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-06    0.0021      10      75 ..      34     105 ..      24     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
                    STTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEE..ECTTCEEEE..SS---CCHHHHHH CS
  Thioredoxin_3  10 CakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPal..vidgkvvvs..Gkvpseeeirkll 75 
                    C  C+ ++ ++ e+a+e + k+++ k    d++    kyg++ +P+l  + +g+v ++  G + s+ +++++l
     EHT98798.1  34 CGPCKMIAPILDEVAEEYDGKLTIAKLniDDNPGTaPKYGIRGIPTLllFKNGEVAATkvG-ALSKGQLKEFL 105
                    999***************999988776558888888**********966669**9874338.78888888776 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0021      11     105 ..       4      86 ..       1     107 [. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
   OST3_OST6  11 ngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppk 105
                 +++++l+d+++++ +  + d  ++v + a+     C +C+ ++p ++ va+ ++ +       l  ak+++d+++ +  k+g++ +P lllf+  
  EHT98798.1   4 DKIVHLTDDSFDTDVL-KADGVILVDFWAE----WCGPCKMIAPILDEVAEEYDGK-------LTIAKLNIDDNPGTAPKYGIRGIPTLLLFKNG 86 
                 5677777777777764.6666666666666....6****************99888.......9****************************984 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06    0.0053      26      68 ..      23      63 ..       8      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
                SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESS CS
    AhpC-TSA 26 kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvd 68
                 ++++ f+++ wc +C+  +p l +++ee++  ++++  +++d
  EHT98798.1 23 GVILVDFWAE-WCGPCKMIAPILDEVAEEYD-GKLTIAKLNID 63
                4778899**9.******************99.34556655555 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.016      27      61 ..      21      53 ..       5      68 .. 0.76
   2 ?   -0.5   0.0      0.65     9e+02     118     137 ..      79      98 ..      56     107 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
                TTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCS CS
     Redoxin 27 kgkkvvvnfvpgafcPtCsaehpyleklaellkek 61
                ++++++v f++  +c++C+  +p l+++ae++ ++
  EHT98798.1 21 ADGVILVDFWAE-WCGPCKMIAPILDEVAEEY-DG 53
                68899*******.*******999*****9995.44 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.65
                 EEEEEETTEEEEEEESSSCH CS
     Redoxin 118 yavidedgkvvylevepepe 137
                 + ++ ++g v +++v++ ++
  EHT98798.1  79 TLLLFKNGEVAATKVGALSK 98 
                 44566899999999988774 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-05     0.028     116     183 ..      43     106 ..      38     109 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
                    HHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EEEETTSS--HHHHHHHHH CS
  Thioredoxin_6 116 aiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsashkykyppkdefspeklkeFlk 183
                    ++ +va+e+ +k+++a ++ ++++     +g++   +P++ +++  ++++ + + + +s+++lkeFl+
     EHT98798.1  43 ILDEVAEEYDGKLTIAKLNIDDNPGTAPKYGIR--GIPTLLLFK--NGEVAATKVGALSKGQLKEFLN 106
                    456777777777777777777777777777777..777777666..6666666677777777777775 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.3e-05     0.073      20      81 ..      25      83 ..      16      85 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-05
                   EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7 20 vlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvvafl 81
                   +lv+f a+wc++C+ ++  +   e+  + +++k    +++++ + +     ++ +g+P+++++
     EHT98798.1 25 ILVDFWAEWCGPCKMIAPILD--EVAEE-YDGKLTIAKLNIDDNPGTA-PKYGiRGIPTLLLF 83
                   8*************9986553..34555.7778777777777777644.32235667777766 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.6e-05     0.091       8      57 ..      32      84 ..      29     106 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.6e-05
                TT-HHHHHHHHHHHHHCCCTT..EEEEEEETTT-CCCHCCCCTT.TTEEEECT CS
      DUF836  8 pgChlCeqakekLkelkleeg..leleviDIakdeeleakYgle.ipvlaleg 57
                + C+ C+ +  +L e+++e +  l++ + +I++++    kYg + ip l+l +
  EHT98798.1 32 EWCGPCKMIAPILDEVAEEYDgkLTIAKLNIDDNPGTAPKYGIRgIPTLLLFK 84
                56*************98887788******************975577776655 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.021        29       2      40 ..      27      63 ..      26      66 .. 0.79
   2 ?    7.7   0.0     0.002       2.8     152     190 ..      61     103 ..      58     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.021
                EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSS CS
        DSBA  2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfela 40
                vd++ +  C+ C++ ++ l+++a+ + d k+++  ++++
  EHT98798.1 27 VDFWAE-WCGPCKMIAPILDEVAEEY-DGKLTIAKLNID 63
                566666.59*****************.777777666666 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHTT-SSSSEEEE..TTC..EEEESSSSHHHHHH CS
        DSBA 152 avrentaaaqslgvtGvPtvvv..dgk..rmvfGadrldtlad 190
                  +++n   a ++g++G+Pt ++  +g+   + +Ga +  +l++
  EHT98798.1  61 NIDDNPGTAPKYGIRGIPTLLLfkNGEvaATKVGALSKGQLKE 103
                 5788889999**********99988885555667766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 844.58
//
Query:       EHT98799.1  [L=419]
Description: transcription termination factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-32  110.4   0.0    6.3e-32  109.3   0.0    1.6  1  Rho_RNA_bind   Rho termination factor, RNA-binding domain
    9.6e-23   81.0   0.0    1.4e-22   80.4   0.0    1.3  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    2.6e-16   59.3   1.3      2e-15   56.4   0.2    2.7  3  Rho_N          Rho termination factor, N-terminal domain
    1.3e-05   25.2   0.0    2.6e-05   24.2   0.0    1.4  1  NACHT          NACHT domain
      0.002   17.8   0.0     0.0043   16.7   0.0    1.5  1  OB_RNB         Ribonuclease B OB domain
     0.0028   17.3   0.0       0.01   15.4   0.0    1.9  1  AAA_25         AAA domain
     0.0041   17.5   0.0     0.0089   16.5   0.0    1.6  1  AAA            ATPase family associated with various cellular
     0.0065   16.8   0.0      0.018   15.4   0.0    1.7  1  AAA_22         AAA domain
  ------ inclusion threshold ------
       0.11   11.1   0.0        8.3    4.8   0.0    2.1  2  Terminase_GpA  Phage terminase large subunit (GpA)


Domain annotation for each model (and alignments):
>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.0   3.1e-35   6.3e-32       2      73 .]      52     125 ..      51     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 3.1e-35
                   EEEEEE-TTS-EEEE-G..TT---TT-EEE-CCCCCCTT--TT-EEEEEEE---SSS-SEEECEECEETTEEXX CS
  Rho_RNA_bind   2 eGiLeilpdgygFlRts..nylpgpedvYVsasqirkfgLrtGDaveGkvrppkerekynaLlrvesvngeepe 73 
                   +G+Leil+dg+gFlR+   +yl+gp+d+YVs+sqir+f+LrtGD+++Gk+rppke+e+y+aLl+v++vn ++pe
    EHT98799.1  52 DGVLEILQDGFGFLRSGdsSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNYDKPE 125
                   6**************9888****************************************************997 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   7.1e-26   1.4e-22       3     211 ..     160     363 ..     158     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 7.1e-26
                  HHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS..S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   3 rvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd..d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  rvlD+  pi++Gqr li++  + Gkt+++q++++    +  d +  + +i er +ev+e+ + ++ g       ++a+t +ep+   ++++ + i  A
   EHT98799.1 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNhpDcVLMVLLIDERPEEVTEMQRLVK-G------EVIASTFDEPASRHVQVAEMVIEKA 250
                  9****************************999998766655667788899*******99765444.3......3799********************* PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCS.TTSHHHHHHHHHSSEEEEB- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggD.fsdpvttatlgitdgfivLd 194
                    + +++k+v++++ds++r a+A++ +  + g++  + g  a+  ++  ++   a ++ ++ Gs+ti+a+  ++ g  +++ + ++  g  +  + L+
   EHT98799.1 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNV-EEGGSLTIIATALVDTGSkMDEVIYEEFKGTGNMELHLS 346
                  ********************************986.589*******************.678*******9999877516778889999999******* PP

                  HHHHHTTBSSSBCTTTE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 195 kklaqrkhfPainvlvS 211
                  +k+a++++fPai+   S
   EHT98799.1 347 RKIAEKRVFPAIDYNRS 363
                  *************9988 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.2     1e-18     2e-15       1      43 []       5      47 ..       5      47 .. 0.98
   2 ?   -3.4   0.0       4.8   9.6e+03      19      31 ..     216     228 ..     215     229 .. 0.78
   3 ?    0.8   0.0      0.25   4.9e+02      21      31 ..     361     371 ..     347     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1e-18
                HHHHS-HHHHHHHHHHTT-TTGGGS-HHHHHHHHHHGGGSSSS CS
       Rho_N  1 eLkektlseLraiAkelgienysrlRKqdLIfaIlkaqaekgg 43
                eLk+ ++seL  + + +g+en +r+RKqd+If Ilk++a++g+
  EHT98799.1  5 ELKNTPVSELITLGENMGLENQARMRKQDIIFSILKQHAKSGE 47
                8***************************************997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.8
                 -TTGGGS-HHHHH CS
       Rho_N  19 ienysrlRKqdLI 31 
                 ++ ++rl K+++I
  EHT98799.1 216 VTEMQRLVKGEVI 228
                 5667899999999 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.25
                 TGGGS-HHHHH CS
       Rho_N  21 nysrlRKqdLI 31 
                 n+s+ RK +L 
  EHT98799.1 361 NRSGTRKEELL 371
                 99*******96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.3e-08   2.6e-05      12      96 ..     183     273 ..     180     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.3e-08
                 CHHHHHHHHHHHHCTS-SCCCC-SEEEEE..ETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.......EEEE-STT-SS- CS
       NACHT  12 GKTtLlqklalawaegklpqgafklvFfl..slrelsrsgnarsladllfsqlpepaapvsevwavllelperlL.......lilDglDelvtd 96 
                 GKT+Llq +a+ +a ++++++   +v+++  +  e+++ ++     ++++s ++epa+++ +v ++++e ++rl+       ++lD++ +l++ 
  EHT98799.1 183 GKTMLLQNIAQSIAYNHPDCV--LMVLLIdeRPEEVTEMQRL-VKGEVIASTFDEPASRHVQVAEMVIEKAKRLVehkkdviILLDSITRLARA 273
                 *****************9995..4555541144455555444.889****************9999999999999999999999***9988875 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.2e-06    0.0043       1      42 [.      53     101 ..      53     110 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.2e-06
                 EEEEE-SSS-EEEEECT......TEEEEE-HHHHTT..S-TT-EEEEEE CS
      OB_RNB   1 GtvrahkkGFGFlipde.....gkeDifippeqmkk..amhGDrVlvri 42 
                 G++++ ++GFGFl+  +     g +Di+++p+q+++     GD++  +i
  EHT98799.1  53 GVLEILQDGFGFLRSGDssylaGPDDIYVSPSQIRRfnLRTGDTIAGKI 101
                 789999********9888***************9951145677766665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.1e-06      0.01      30      62 ..     168     200 ..     153     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.1e-06
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkp 62 
                 + +g  +l++++p++GKt+l+ ++a ++a  +p
  EHT98799.1 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
                 568999**********************97775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.5e-06    0.0089       2      74 ..     175     274 ..     174     288 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.5e-06
                 EEESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve....................fleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaks 73 
                 l++ pp  GKT+l + +a+++  +                    + ++   e++ +++ e +++  ++ + + eka       k +i+++D i +la++
  EHT98799.1 175 LIVAPPKAGKTMLLQNIAQSIAYNhpdcvlmvlliderpeevteMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAkrlvehkKDVIILLDSITRLARA 273
                 6889****************85444455444444444444444444444445554455555555444444433333344455336**********9987 PP

                 H CS
         AAA  74 r 74 
                  
  EHT98799.1 274 Y 274
                 6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.8e-06     0.018       8     103 ..     174     270 ..     169     283 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.8e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsst..sskdl..lrellralglelkaerlsseell.ealeqalraraviellii 97 
                 +++++++ +GKT+ll++++++       ++++p++v    +++   ++  + + l   + +++ +++++++   +  e++ e+  + ++++++ +++++
  EHT98799.1 174 GLIVAPPKAGKTMLLQNIAQSI------AYNHPDCVlmvlLIDERPEEvtEMQRLvkGEVIASTFDEPASR-HVQVAEMViEKAKRLVEHKKD-VIILL 264
                 79******************97......3334444435566666666676444442446788888888888.888888887999999999999.99999 PP

      AAA_22  98 DEaqhl 103
                 D + +l
  EHT98799.1 265 DSITRL 270
                 988777 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0063        13      37      79 ..     175     217 ..     161     230 .. 0.86
   2 ?    4.8   0.0    0.0041       8.3     325     349 ..     269     292 ..     245     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0063
  Terminase_GpA  37 vfvkpaqvGkTelllnwigyvidndpapmlvvqptkdlarefs 79 
                     +v p + GkT ll+n+  ++  n p+ +l+v+  ++  +e++
     EHT98799.1 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT 217
                    5799***************************998887776665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0041
  Terminase_GpA 325 eraedlergtvPagvlvltagVDvQ 349
                    + a+  ++++vPa+++vlt gVD  
     EHT98799.1 269 RLARA-YNTVVPASGKVLTGGVDAN 292
                    33444.599**************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2924.07
//
Query:       EHT98800.1  [L=366]
Description: Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-29  100.5  21.2    8.7e-29  100.5  21.2    2.6  3  Glycos_transf_4  Glycosyl transferase family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1     0.067   1.2e+03     101     134 ..      19      69 ..       6      73 .. 0.48
   2 !  100.5  21.2   4.9e-33   8.7e-29       3     157 ..      75     232 ..      73     235 .. 0.94
   3 ?   -0.8   0.4     0.074   1.3e+03      55      55 ..     313     313 ..     245     341 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.067
  Glycos_transf_4 101 alvvla.................avdgrsellllalallgallGfllfNry 134
                      a+++la                   +g   l+  + +++g +++f++ N+y
       EHT98800.1  19 AFLFLArkaaekiglvdkpnmrkRHQGVVPLVGGISVYAGICFAFYITNYY 69 
                      444444555555555555532111112222222244566677777777765 PP

  == domain 2  score: 100.5 bits;  conditional E-value: 4.9e-33
  Glycos_transf_4   3 lllltillilllGflDDvlglkarlKlilqilaalililtldlslttlgllltqvlielglilavlltllvivgvtNavNliDGldGlaagvsi 96 
                      l+l+++ +++++G+lDD ++++++++  +q ++a++++++++l l +lg++++ v + +g  + ++ltl+++++++Na+N++DG+dGl +g+si
       EHT98800.1  75 LYLACAGVLVFVGALDDRFDISVKIRATVQGIVAVVMMFFGKLYLLSLGFIIGPVELIVG-PFGYVLTLFAVWAAINAFNMVDGIDGLLGGLSI 167
                      67889999*********************************************9999999.889999*************************** PP

  Glycos_transf_4  97 iialalvvlaavdgrsellllalallgallGfllfNryp....AkvFmGDsgslflGlvlavlai 157
                      ++++a++++ ++dg+++l++ ++a+++a+l +++ N        kvFmGD+gs+++G+++ ++ +
       EHT98800.1 168 VTFAAMGIILYLDGQHSLAMWCFAMIAATLPYVFLNLGFlgrrYKVFMGDAGSTMIGFTIIWILL 232
                      ************************************87655558****************99877 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.074
  Glycos_transf_4  55 t 55 
                       
       EHT98800.1 313 E 313
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 2450.62
//
Query:       EHT98801.1  [L=349]
Description: Enterobacterial Common Antigen (ECA) polysaccharide chain length modulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-10   40.4   0.0    1.3e-09   38.2   0.0    2.2  3  Wzz       Chain length determinant protein
    0.00029   20.8   0.9       0.55   10.4   0.1    2.7  2  DUF4235   Protein of unknown function (DUF4235)
  ------ inclusion threshold ------
      0.015   15.9   2.4      0.025   15.2   2.4    1.3  1  Striatin  Striatin family
      0.043   13.4   0.1      0.069   12.7   0.1    1.3  1  DUF4893   Domain of unknown function (DUF4893)
       0.13   12.5   0.4       0.25   11.6   0.4    1.5  1  RGS       Regulator of G protein signaling domain
       0.15   12.0   0.3       0.42   10.6   0.0    1.9  2  GNVR      G-rich domain on putative tyrosine kinase


Domain annotation for each model (and alignments):
>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   4.5e-13   1.3e-09       1      88 [.       8      95 ..       8      99 .. 0.80
   2 ?   -2.8   0.0       2.7   8.1e+03      65      90 ..     137     164 ..     121     165 .. 0.64
   3 ?   -2.4   0.0       2.1   6.3e+03      16      45 ..     318     347 ..     316     348 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4.5e-13
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHHHH.HHHHCCHHHHHHHHHH.HHHHHHHSSSS--EE CS
         Wzz  1 eeiDLieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqvea.ssltaqdvqanlqlas.teieilkSrdvlekv 88
                +e+D++ L  +Lw++k +I+ +++lfa++a + ++l+++++++ta+   p+ +     s  ++q+++ nl++ + + + +  S+ v+++v
  EHT98801.1  8 NELDIRGLCCRLWRGKHWIVGCAVLFAVAAWLATLLMKQVWSTTAITGRPTVNM--LgSYYSQQQFLNNLDVRNdAVTLTSASPNVMDEV 95
                79*******************************************999999876..4466677788888877763333444455555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
                 HHHHH..HHHHHHHHHHHSSSS--EEEE CS
         Wzz  65 vqanl..qlasteieilkSrdvlekvis 90 
                 + +n+  ++a t + +++S ++  +++s
  EHT98801.1 137 LIDNIqfTPADTARNTFDSVKLKAETAS 164
                 4555433667788888888888777765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.1
                 XXXXXXXXXXXXXXXXXXXXXXXX-EEEEE CS
         Wzz  16 kklIilvtllfallaviyaflatpkYtata 45 
                  ++ ++  +++al+++++a++ + +  +++
  EHT98801.1 318 VFMMVMWGAVGALVGAGVALARRRRPMSDT 347
                 556666678889999999887776666665 PP

>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00018      0.55       7      33 ..      31      57 ..      27      73 .. 0.84
   2 !    8.2   0.1   0.00089       2.6      38      66 ..     313     341 ..     289     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
     DUF4235  7 vlglvaGavagkafaavWkkvtgedaP 33
                vl +va+++a  ++++vW  ++   +P
  EHT98801.1 31 VLFAVAAWLATLLMKQVWSTTAITGRP 57
                7789**************977665556 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00089
     DUF4235  38 dedvslrevllfAaisGavlavvrvaadR 66 
                  + +++++++++ a+ ++v+a+v +a +R
  EHT98801.1 313 NSPRRVFMMVMWGAVGALVGAGVALARRR 341
                 556789*****************998877 PP

>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   2.4   8.4e-06     0.025      28      76 ..     187     240 ..     167     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.4e-06
    Striatin  28 aEmk....arIakLegerrgaenlkkd.lvrrikmLEyalkqerakylklkegt 76 
                 aE+k    ar a+L+ + r++e++ ++   rri  LE+alk   +k ++ k++ 
  EHT98801.1 187 AELKgawqARDAQLQAQVRRQEAVANAvFQRRIHRLEQALKVASQKGITEKQTN 240
                 5665544499************987662689************98844332222 PP

>> DUF4893  Domain of unknown function (DUF4893)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.3e-05     0.069      30      98 ..     164     233 ..     141     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
     DUF4893  30 agesaelaelgsllepeaaladpaelaGdyrCrtiklggq.reaglvvYpaFrCrvtadggalaleKltG 98 
                 +  ++ l++  +  ++ aa++ +ael+G+++ r  +l +q r++++v+   F+ r+   ++al+++ ++G
  EHT98801.1 164 SDANNLLRQYIAYASERAARHLNAELKGAWQARDAQLQAQvRRQEAVANAVFQRRIHRLEQALKVASQKG 233
                 2223445555566689999999******************99********************99988887 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   8.2e-05      0.25      13      90 ..      94     207 ..      86     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHTTCT.HHHHHHHHHHHHHTS..................................SHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHHHH CS
         RGS  13 slFreFlesefse.enlsFwlaveefkka..................................keqeelkkkakeIyneylapsspkel.nidkklree 75 
                 +++ eFl + +s     +Fwl+++ +k++                                  k + e+ ++a++++++y+a +s++   +++ +l+  
  EHT98801.1  94 EVYHEFLVQLSSWdTRREFWLQTDYYKSRksgnahndavlldelidniqftpadtarntfdsvKLKAETASDANNLLRQYIAYASERAArHLNAELKGA 192
                 678899999777678899*********************************************99******************9998887898888877 PP

                 HHHHHCSSSTTTTTT CS
         RGS  76 lekrlekeqpsrklf 90 
                  ++r  + q + +  
  EHT98801.1 193 WQARDAQLQAQVRRQ 207
                 777655554444444 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         5   1.5e+04      61      79 ..      26      44 ..      23      46 .. 0.61
   2 ?   10.6   0.0   0.00014      0.42      50      81 ..     309     340 ..     302     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5
        GNVR 61 ivvlalllGlllgvalvll 79
                iv +a+l+++ +  a+ l+
  EHT98801.1 26 IVGCAVLFAVAAWLATLLM 44
                6667777776666655555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
        GNVR  50 pekpvkPkkalivvlalllGlllgvalvllrr 81 
                 p ++ +P++ + +v+   +G+l+g++++l+rr
  EHT98801.1 309 PVSRNSPRRVFMMVMWGAVGALVGAGVALARR 340
                 3345579************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2604.11
//
Query:       EHT98802.1  [L=376]
Description: UDP-N-acetylglucosamine 2-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-124  415.8   0.0   1.2e-124  415.7   0.0    1.0  1  Epimerase_2  UDP-N-acetylglucosamine 2-epimerase


Domain annotation for each model (and alignments):
>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.7   0.0  6.9e-129  1.2e-124       1     347 []      21     370 ..      21     370 .. 0.97

  Alignments for each domain:
  == domain 1  score: 415.7 bits;  conditional E-value: 6.9e-129
                  HHHTTS-..EEEEEEE-S--SGGGTHHHHHHTT----SEEE-..--S--HHHHHHHHHHHHHHHHHHH--SEEEEESSSHHHHHHHHHHHHTT-EEEE CS
  Epimerase_2   1 kalkaeselelqlvvtGqHldremgdtvfeeleiekpdydln..sdsqslakstgrvligleevleeekpDlvlvlGDtnetlagalaAfklripvaH 96 
                  +al++++ +e +l+vt+qH  rem+d+v++ +++ +pdydln  +++q+l+++t r+l+g+  vl + kpD+vlv+GDt++tla++laAf+++ipv+H
   EHT98802.1  21 QALAQDPAFESRLCVTAQH--REMLDQVLSLFQL-QPDYDLNimRPEQGLTEITCRILQGMHTVLLDFKPDIVLVHGDTTTTLAASLAAFYQQIPVGH 115
                  58999**************..*************.999999987888*************************************************** PP

                  ET-----S-TT..SHHHHHHHHHHHT-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHHHH...T.-HHHHHH....--SS-EEEEE-- CS
  Epimerase_2  97 veAGlRsfdltegmpeEinRhlidklsdlhfapteearenLlkegeeeerifvvGntviDalllskeeieeklk.aseilke....lkekkyvlvtlH 189
                  veAGlR++dl +++peE nR+l+++l+ lhf+pt+++r+nLl+e+ ++++i+++GntviDall++++++ ++ + ++++ ++    +++kk+vlvt H
   EHT98802.1 116 VEAGLRTGDLASPWPEEGNRKLTGHLARLHFTPTSRSRQNLLDENLPDDSIVITGNTVIDALLWVRDRVLDDNAiNAQLAARypflDENKKLVLVTGH 213
                  ********************************************************************99877655555555899899********** PP

                  -HHHHTSHHHHHHHHHHHHHHHHH.H--EEEEE--..HHHHHHHHHHHHH-TTEEEE----HHHHHHHHHC-SEEEES-HHHHHHHHHCT--EEESSS CS
  Epimerase_2 190 rrenedeperlkeilealkalake.kdvevvvpvhnnprtrkrlleeleelenvtlieplgyldflsllknaklvltdSgGiqeEapslgvpvvnlRe 286
                  rre+++    +++i++al+++a++ +++++v+pvh+np++++ ++++l++++n+ liep +yl f++l+++a+l+ltdSgGiqeEapslg+pv+++Re
   EHT98802.1 214 RRESFGGG--VERICSALAEIARQhPEAQIVYPVHLNPNVHEPVNRILRDIKNIVLIEPQEYLPFVWLMNRAWLILTDSGGIQEEAPSLGKPVLVMRE 309
                  ******77..**************************************************************************************** PP

                  S-S-THHHHTTSEEE-TT-HHHHHHHHHHHCT-..--......--TT-SS-HHHHHHHHHH CS
  Epimerase_2 287 eteRpegveagtnvlvgtdkeeIvaaleklledkkelekmanaknpYgdGkaseriveile 347
                  +teRpe+v+agt++lvgtd+++Iva+++ ll+d++++++m++a+npYgdG+a+ ri+++l+
   EHT98802.1 310 TTERPEAVDAGTVKLVGTDTAKIVAEVSALLNDDEAWQTMSRAHNPYGDGNACGRILQALK 370
                  **********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2629.04
//
Query:       EHT98803.1  [L=419]
Description: UDP-N-acetyl-D-mannosamine dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-60  201.4   0.0    3.5e-58  196.3   0.0    2.2  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      6e-26   90.5   0.0    1.1e-25   89.6   0.0    1.5  1  UDPG_MGDP_dh     UDP-glucose/GDP-mannose dehydrogenase family
    5.4e-19   68.6   0.0    1.4e-18   67.2   0.0    1.8  1  UDPG_MGDP_dh_C   UDP-glucose/GDP-mannose dehydrogenase family
    1.6e-07   31.6   0.1    8.7e-07   29.2   0.0    2.2  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    4.5e-05   23.5   0.7      0.089   12.8   0.0    2.8  3  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
    0.00014   21.8   0.5    0.00036   20.5   0.2    1.8  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00024   20.8   0.3     0.0079   15.8   0.0    3.0  3  ApbA             Ketopantoate reductase PanE/ApbA
    0.00044   19.7   0.4      0.058   12.8   0.1    2.3  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0089   16.3   0.7      0.019   15.3   0.1    1.9  2  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
      0.024   14.9   1.9      0.038   14.3   0.7    1.9  2  TetR_C_11        Tetracyclin repressor-like, C-terminal domai
      0.025   15.0   0.0       0.13   12.7   0.0    2.2  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
      0.028   13.6   0.1      0.049   12.9   0.1    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.036   14.6   0.1       0.11   13.1   0.1    1.8  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.085   13.2   0.1       0.23   11.8   0.1    1.7  1  Mur_ligase       Mur ligase family, catalytic domain
       0.12   13.0   0.2        0.8   10.5   0.0    2.5  3  Methyltransf_25  Methyltransferase domain
        0.2   12.3   2.8        4.7    7.9   0.1    2.9  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.0   3.1e-61   3.5e-58       2     181 ..       5     185 ..       4     191 .. 0.96
   2 ?    2.7   0.0     0.071        80      35      84 ..     347     393 ..     344     404 .. 0.83

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 3.1e-61
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaaD 96 
                     +isviGlGY+Gl+taav+a++g++v+gvDi++++vd++n+g i+i+ep+Le++v++av     ++ +++++++e+ad+++iaV+TP++  ++++D
      EHT98803.1   5 TISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHIVEPDLEQVVQAAV----ARGDLRATTQPEAADAFLIAVPTPFQA-DRQPD 94 
                     79********************************************************....5777777888999**************.***** PP

                     THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-......TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHH CS
  UDPG_MGDP_dh_N  97 lkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkk......gvdfdvvsnPEflregsavkdllnpdrvviGveekkae 181
                     l++v++aa sia++lkkg++v+++ST pvg++e++++++++e+++ +      + d+ ++++PE++++g+++ +l+++drv++G+++ +++
      EHT98803.1  95 LRFVQAAAISIAPVLKKGDLVILESTSPVGSTEQMAEWLAAERPDLRfpqqgdEPDVFIAYCPERVLPGQIMVELIKNDRVIGGMTPACSA 185
                     ********************************************99999999999*********************************998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.071
                     HHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-- CS
  UDPG_MGDP_dh_N  35 kvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaV 84 
                      ++ +++g+  ++ep +e++ ++  +        + e+a+++ad++++ V
      EHT98803.1 347 LIADWHQGRTWVTEPHIEQIPERLET---QATLVSTEQALQQADILVMLV 393
                     6899***************9988773...344456788899999998877 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0     1e-28   1.1e-25       1      93 [.     205     292 ..     205     293 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 1e-28
  UDPG_MGDP_dh   1 etAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgleaelleavrevNe 93 
                   +tAE++Kl++N+f++++I+f+Nel+ +c + +i+v+e+i  ++ +pr   ++l+pg+GvGG+c+ +D++++va+  +l   a+l++++revN+
    EHT98803.1 205 RTAEMCKLTENSFRDVNIAFANELSLICAEQQINVWELIALANRHPR--VNILQPGPGVGGHCIAVDPWFIVAQNPDL---ARLIRTAREVND 292
                   69*********************************************..5*************************998...9**********8 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   1.3e-21   1.4e-18       1     103 [.     323     418 ..     323     419 .] 0.90

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 1.3e-21
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHC.TSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCCSS- CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLlee.gaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelmkpa 94 
                     a++GlafK+++dDlReSpa+++++ +++  + +  + +P++++ +++    e+++++v s e+al++ad++v+l++h+ f+ +d+a +     ++
      EHT98803.1 323 ACFGLAFKPNIDDLRESPAMEVAHLIADWhQGRTWVTEPHIEQIPERL---ETQATLV-STEQALQQADILVMLVDHQAFRAIDAAHV----TQQ 409
                     799*************************9445799********99998...5577777.68**********************98766....67* PP

                     EEEESSS-C CS
  UDPG_MGDP_dh_C  95 vvfDgrnvl 103
                     +v+D+++v+
      EHT98803.1 410 WVVDTKGVW 418
                     ******997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   7.7e-10   8.7e-07       1     107 [.       5     136 ..       5     142 .. 0.84
   2 ?   -1.1   0.0       1.7   1.9e+03      41      66 ..     372     396 ..     352     405 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.7e-10
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-S.SHHHHHHHC...............SEEEE-SSSHHHHHHHHHS..... CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaae.sieelvasl...............dvvitmvkagkavdevieg..... 75 
                    +i +iGlG +G + a  ++++g kv++++ ++ +v+++    ++++e ++e++v+++               d+ ++ v+   + d   +      
     EHT98803.1   5 TISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHIVEpDLEQVVQAAvargdlrattqpeaaDAFLIAVPTPFQADRQPDLrfvqa 100
                    589*****************************9999999888666552556666666888888888899999999999998887776555455566 PP

                    ....HCCC--TT-EEEE-S---HHHHHHHHHHHHHT CS
  NAD_binding_2  76 ....llealkkgdilidgstsspedtrelakelkek 107
                        +++ lkkgd++i  sts + +t+++a+ l+++
     EHT98803.1 101 aaisIAPVLKKGDLVILESTSPVGSTEQMAEWLAAE 136
                    888899************************988875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
                    TTEEE-SSHHHHHHHCSEEEE-SSSH CS
  NAD_binding_2  41 egakaaesieelvasldvvitmvkag 66 
                    ++a+ + s e++++++d+ +++v ++
     EHT98803.1 372 TQAT-LVSTEQALQQADILVMLVDHQ 396
                    4443.445678889999888887664 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   7.9e-05     0.089       2      81 ..       6      87 ..       5     111 .. 0.86
   2 ?   -1.5   0.0         2   2.2e+03      59      96 ..     276     313 ..     273     326 .. 0.78
   3 !    8.0   0.0    0.0023       2.6      62      87 ..     378     403 ..     343     418 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-05
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHH..TT--EEEE---HHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaeal..kgadiivlvvPsqa 81
                    i+v+G G  G   A+v+a++g++v+    ++  +++in+   +    +  ++ ++ va  dl+++   + ad  +++vP+ +
      EHT98803.1  6 ISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHIVEPDLEQVVQAAVARGDLRATTqpEAADAFLIAVPTPF 87
                    99************************************99888776555667788888889988773358999999999876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
                     EES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT CS
  NAD_Gly3P_dh_N  59 attdlaealkgadiivlvvPsqalrevlkklkgllkkk 96 
                      ++dla+ ++ a+ +  + P+ +l++v k l+++l++ 
      EHT98803.1 276 QNPDLARLIRTAREVNDAKPHWVLEQVKKALADCLTQT 313
                     67888888888888888889999999988888887544 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0023
                     -HHHHHTT--EEEE---HHHHHHHHH CS
  NAD_Gly3P_dh_N  62 dlaealkgadiivlvvPsqalrevlk 87 
                       ++al++adi+v+ v +qa+r + +
      EHT98803.1 378 STEQALQQADILVMLVDHQAFRAIDA 403
                     4579*****************98854 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   3.2e-07   0.00036       1      44 [.       5      48 ..       5      82 .. 0.76
   2 ?   -2.3   0.0       3.1   3.5e+03      83     106 ..     363     386 ..     348     391 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.2e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiek 44
                ++ viG G +G   aavfas+g +Vv vdi+++a+++ ++ + +
  EHT98803.1  5 TISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIH 48
                589***************************99988876655444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
                 EE-S-SSHHHHHHHHHHHHCCS-T CS
     3HCDH_N  83 iEavvEnlelKrkvfaelekiakp 106
                 iE ++E+le  + +  + +++ ++
  EHT98803.1 363 IEQIPERLETQATLVSTEQALQQA 386
                 788888888887777665555544 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.1e-06    0.0079       1      78 [.       6      85 ..       6     136 .. 0.88
   2 ?    0.4   0.0      0.39   4.4e+02     110     133 ..     165     188 ..     162     204 .. 0.82
   3 ?    0.0   0.0      0.53   5.9e+02      81     116 ..     359     394 ..     355     411 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.1e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCH.SCCCCS-ESEEEE-SSG CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsae.ekselepidlvivtvKa 78
                i ++G+G iG   aa  a +g +v+ ++ ++  ++++++  +++ +++ e++++  +a  +  ++ + e +d ++++v++
  EHT98803.1  6 ISVIGLGYIGLPTAAVFASKGKKVVGVDINArAVDTINRGAIHIVEPDLEQVVQAAVARGDLrATTQPEAADAFLIAVPT 85
                789****************************99999************66666665555555777888999999999987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.39
                 HHTTTSTTSEEEEEEEE-EEEEEE CS
        ApbA 110 elrealpkprvlggvtthgatreg 133
                 ++ e ++++rv+gg+t+ +++r +
  EHT98803.1 165 IMVELIKNDRVIGGMTPACSARAS 188
                 567788899********9988765 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.53
                 HHHHHHHHGGGECTCEEEEEESSSSCHHHHHTTTST CS
        ApbA  81 teealeeikplldpntvvlllqNGlgheeelrealp 116
                 te  +e+i ++l+ +++ +++   l+++++l   ++
  EHT98803.1 359 TEPHIEQIPERLETQATLVSTEQALQQADILVMLVD 394
                 666777788888888888887777777777766663 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   5.2e-05     0.058      37      83 ..       4      50 ..       1      62 [. 0.79
   2 ?    4.9   0.0     0.013        15      68     100 ..     362     394 ..     342     405 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
                  SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv 83
                  +t+ +iGlG IG  +a ++++ g kv+++d + ++ ++ ++  ++ v
    EHT98803.1  4 ETISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHIV 50
                  6999****************************998875555444544 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                   SHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S- CS
  2-Hacid_dh_C  68 skkkeeeeeelgvelvsleellaesDivslhlp 100
                   + ++  e  e++++lvs e++l+++Di+++ + 
    EHT98803.1 362 HIEQIPERLETQATLVSTEQALQQADILVMLVD 394
                   444444556678899**************9886 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.7e-05     0.019       2      71 ..       7      84 ..       6     104 .. 0.80
   2 ?   -3.3   0.1       9.4   1.1e+04      60      75 ..     383     398 ..     377     407 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSE........EEES-TTSHHHHHHTTGGGESEEEE-SS CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreegle........vvvgdatdeevLeeagiekadaviaatg 71
                 +iGlG +G   a  + ++gk+vv++d + ++v+++ +  ++        vv++ +++ ++ +  + e ada+++a++
  EHT98803.1  7 SVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHivepdleqVVQAAVARGDLRATTQPEAADAFLIAVP 84
                59****************7768*************9877766444556667777777777777777777777777766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.4
                 GGGESEEEE-SSSHHH CS
      TrkA_N  60 iekadaviaatgddea 75 
                 +++ad+++ ++++ ++
  EHT98803.1 383 LQQADILVMLVDHQAF 398
                 5666777766666554 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.7   3.4e-05     0.038      53      88 ..      47      82 ..      33      85 .. 0.84
   2 ?   -2.7   0.0       6.4   7.2e+03      43      68 ..     279     288 ..     274     311 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-05
   TetR_C_11 53 leprraalravlrrAvarGelradadvelvldlllg 88
                ++     l++v++ AvarG+lra + +e++ + l++
  EHT98803.1 47 IHIVEPDLEQVVQAAVARGDLRATTQPEAADAFLIA 82
                555667899******************999888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.4
   TetR_C_11  43 elaealrerlleprraalravlrrAv 68 
                 +la+ +r+                A+
  EHT98803.1 279 DLARLIRT----------------AR 288
                 44443333................22 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.7   6.4e+03      47      71 ..     200     224 ..     163     226 .. 0.56
   2 ?   12.7   0.0   0.00011      0.13      19      95 ..     336     413 ..     332     419 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.7
                     GGTTTECEBEEEGGGGGCTT-SEEE CS
  Semialdhyde_dh  47 aleegkdlkvedvdeeelkevdivf 71 
                       ++ ++ ++ + +e+++++v+i+f
      EHT98803.1 200 VETHARTAEMCKLTENSFRDVNIAF 224
                     3445556666667778888888887 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00011
                     HHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE...GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEEE CS
  Semialdhyde_dh  19 LeehpevelvvllsssrsaGkklaeavkaleegkdlkved...vdeeelkevdivflalpagvskelapklaeagvkviD 95 
                     L+e+p +e+++l++  + +G+++    ++ +  + l+ ++    +e++l+++di+++ +++++ +++ ++ + +++ v+D
      EHT98803.1 336 LRESPAMEVAHLIADWH-QGRTWVTEPHIEQIPERLETQAtlvSTEQALQQADILVMLVDHQAFRAIDAAHVTQQW-VVD 413
                     8899*************.*****99977666667777777664566777********************9999999.556 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.3e-05     0.049     144     194 ..       5      55 ..       2      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-05
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleeale 194
                   i v+G GyiG+ +Aa++a+ gk+v+ v+ + r + + ++ +  ++e  le
   EHT98803.1   5 TISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHIVEPDLE 55 
                  578***********************9*99999998888888777776665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.4e-05      0.11       2      46 ..       6      50 ..       5      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.4e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskil 46
                + v+G Gyigl  A+++a  gkkV  v+ + +    +++ a  i+
  EHT98803.1  6 ISVIGLGYIGLPTAAVFASKGKKVVGVDINARAVDTINRGAIHIV 50
                669*********************988888777766666665555 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00021      0.23      14      63 ..      17      75 ..       5      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
                HHHHHHHHTTSEEEEEESSHC...HHHTT-EEEES-HGGGG....EE-T.S-TT.CHHH CS
  Mur_ligase 14 agalflalkGykvdGsdfies...lialGaaavvghdaani....vvss.iskd.npel 63
                + a ++a kG+kv G d+++     i++Ga  +v  d +++    v+   +++  +pe 
  EHT98803.1 17 PTAAVFASKGKKVVGVDINARavdTINRGAIHIVEPDLEQVvqaaVARGdLRATtQPEA 75
                6688999**************9999****999888888877566555555555555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00071       0.8      14      67 ..      21      78 ..       9     112 .. 0.64
   2 ?   -2.3   0.0         7   7.8e+03      47      71 ..     199     224 ..     178     243 .. 0.58
   3 ?   -2.8   0.0       9.9   1.1e+04      41      41 ..     291     291 ..     264     334 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00071
                     HHHCTSTSSEEEEEESSHHHHHHHHHHHHH......TTT.TEEEEESBCCGBSSSTTTEEE CS
  Methyltransf_25 14 alakrlgkakvtgvDiseemleaareraee......egl.nvefvqgdaedlpfedgsfDl 67
                      +a + g +kv+gvDi++++++++++ a +      e++ ++ + +gd+++  +++   D+
       EHT98803.1 21 VFASK-G-KKVVGVDINARAVDTINRGAIHivepdlEQVvQAAVARGDLRATTQPE-AADA 78
                     34444.4.9**************998876665555433357777778887766554.3443 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7
                      TEEEEESBCCGBSSSTTTE.EEEEEE CS
  Methyltransf_25  47 nvefvqgdaedlpfedgsf.Dlvvss 71 
                       ve +   ae +++ ++sf D+ +++
       EHT98803.1 199 CVETHARTAEMCKLTENSFrDVNIAF 224
                      45556666666666666662333333 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 9.9
                      H CS
  Methyltransf_25  41 a 41 
                      +
       EHT98803.1 291 N 291
                      2 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.095   1.1e+02       2      60 ..       6      59 ..       5      90 .. 0.75
   2 ?    7.9   0.1    0.0041       4.7      39      79 ..     363     403 ..     357     414 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.095
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae 60
                   i +iG G +g   a  ++++g   +++v +    + +a  + ++  + + + d e++++
     EHT98803.1  6 ISVIGLGYIGLPTAAVFASKG---KKVV-G-VDINARAVDTINRGAIHIVEPDLEQVVQ 59
                   899******************...9998.7.4444444444444445555545555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0041
                    HHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHH CS
  F420_oxidored  39 aeelaeelgvkvtavdneeaaeeadvvvlavkpedveevls 79 
                    +e++ e+l+ ++t v++e+a+++ad++v  v  +++ ++ +
     EHT98803.1 363 IEQIPERLETQATLVSTEQALQQADILVMLVDHQAFRAIDA 403
                    67778899999********************9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3137.47
//
Query:       EHT98804.1  [L=235]
Description: lipopolysaccharide biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-11   44.1   0.0    3.1e-11   43.5   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.8e-07   31.2   0.0    2.9e-07   30.5   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.4e-07   30.6   0.0      6e-07   29.8   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    8.4e-05   23.3   0.0    0.00022   21.9   0.0    1.6  2  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0044   16.6   0.0      0.015   14.9   0.0    1.7  2  HofP             DNA utilization proteins HofP
     0.0077   16.6   0.0      0.013   15.9   0.0    1.4  1  TonB_C           Gram-negative bacterial TonB protein C-termi


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0     1e-14   3.1e-11      11     116 ..     112     217 ..      95     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1e-14
                     HTHHHHHHHHHHHHHHH.....HHSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEE CS
  Acetyltransf_1  11 sffppnedaseeefees.....fsleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkiv 98 
                     ++f p+e+  +++  ++     +  + +  +l+++ + g l Gf+sl+ ++      a i  laV p+++g+ +G++L+ a++++ r ++++++ 
      EHT98804.1 112 PWFAPEESGRFYA--QWienavL-GTFDhqCLVACDDSGALQGFVSLREVDG----DARIGLLAVVPAAQGQSIGQRLMLAAADWGRVRQLDRLR 199
                     4444444444444..22223432.22223245556677************99....8*************************************9 PP

                     EEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  99 laveedndaairlYeklG 116
                     +a++ +n  a+rlY + G
      EHT98804.1 200 VATQISNLTAMRLYLRSG 217
                     99************8766 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   9.7e-11   2.9e-07      21     105 ..     130     217 ..     111     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 9.7e-11
  Acetyltransf_10  21 alrerieegealllvaeeggkivGvielrdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklG 105
                      a+   +   +  l++++++g + G+++lr+ +   +i+ll+V p+++gq ig++L+ a+ +  + +++   ++  + s+ +a ++Y + G
       EHT98804.1 130 AVLGTF--DHQCLVACDDSGALQGFVSLREVDgdaRIGLLAVVPAAQGQSIGQRLMLAAADWGRVRQLDRlRVATQISNlTAMRLYLRSG 217
                      444455..34458999**********995555589*************************996666666557777777789999999987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     2e-10     6e-07       3      73 ..     137     217 ..     135     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2e-10
                     EEEEEEEET.TEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHHHTT.SE.EE....EE.EEEETHHHHHHHHHHTT CS
  Acetyltransf_7   3 gevfVaedd.gkivGfialslld..aeitrlaVdpeyrgkGiGraLleaae.kg.ii....le.qlelnaekaikfYeklG 73 
                     ++++Va dd g   Gf++l ++d  a i+ laV p+++g+ iG++L+ aa+ +g ++    l   ++ ++ +a ++Y + G
      EHT98804.1 137 HQCLVACDDsGALQGFVSLREVDgdARIGLLAVVPAAQGQSIGQRLMLAAAdWGrVRqldrLRvATQISNLTAMRLYLRSG 217
                     78999999955555********99888888*****************7633444222222222222223347888998766 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.93   2.8e+03      69      95 ..      58      84 ..      33     103 .. 0.71
   2 !   21.9   0.0   7.5e-08   0.00022      25     137 ..     107     218 ..      85     219 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.93
  Acetyltransf_3 69 vglrdleeedeeaelgymlapsfwgkG 95
                     + ++++  ++eael++++++  ++ G
      EHT98804.1 58 LNQHQFQLVEGEAELSLTIKRTERQTG 84
                    444555555666888888888766666 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 7.5e-08
  Acetyltransf_3  25 mry.lpepltleea....eewlerawaeeseeeg..ygwaivlkdtgv.iGsvglrdleeedeeaelgymla.psfwgkGyateavralleyafe 110
                      r+  p+   +ee+     +w+e+a            ++++   d+g+  G+v+lr+++++   a +g++   p+++g+ +++  + a+ ++  +
      EHT98804.1 107 SRFrSPWF-APEESgrfyAQWIENA-----VLGTfdHQCLVACDDSGAlQGFVSLREVDGD---ARIGLLAVvPAAQGQSIGQRLMLAAADWG-R 191
                     34555552.2333311124445544.....2222223466655777777********9999...99**8877699******************.5 PP

  Acetyltransf_3 111 elglerlvavidkeNeaSirvleklGf 137
                       +l+rl++ ++ +N    r++ + G 
      EHT98804.1 192 VRQLDRLRVATQISNLTAMRLYLRSGA 218
                     556*******************99996 PP

>> HofP  DNA utilization proteins HofP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.7   2.1e+03      23      64 ..      48      89 ..      43      95 .. 0.70
   2 !   14.9   0.0   4.9e-06     0.015      44     103 ..     174     233 ..     169     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.7
        HofP 23 PPedrcriaelslwryqGvvkkGerltgilkdsqkkwrrvee 64
                P ++   i  l++ ++q v  + e   +i ++ +++  r+ +
  EHT98804.1 48 PADQTATIDALNQHQFQLVEGEAELSLTIKRTERQTGVRIAR 89
                445566778888888887777777777777777777777654 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.9e-06
        HofP  44 kGerltgilkdsqkkwrrveegqvlenGwtivrltadkltlktGkgcePsqlvwlrqgee 103
                 +G+++   l  +   w rv++ + l    +i++lta +l l++G   e + + + r g++
  EHT98804.1 174 QGQSIGQRLMLAAADWGRVRQLDRLRVATQISNLTAMRLYLRSGARLESTAYWFYRRGHD 233
                 677777777778899*******************************99998877888875 PP

>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.4e-06     0.013      14      58 ..      66     110 ..      60     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
                 EEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE- CS
      TonB_C  14 ieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfk 58 
                 +eG++++++ti+++ + t v++ ++   + L +aA +a+r+ +f 
  EHT98804.1  66 VEGEAELSLTIKRTERQTGVRIARQGQIPALREAASQAFRQSRFR 110
                 69***************************************8885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1821.95
//
Query:       EHT98805.1  [L=376]
Description: dTDP-4-keto-6-deoxy-D-glucose aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-88  294.9   0.0    1.1e-87  294.6   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    2.1e-09   37.0   0.2    7.5e-09   35.2   0.2    1.8  1  Aminotran_1_2    Aminotransferase class I and II
    2.1e-06   26.9   0.1    3.8e-06   26.1   0.1    1.6  1  Aminotran_5      Aminotransferase class-V
      0.001   17.9   0.0      0.003   16.3   0.0    1.8  2  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
      0.004   16.5   0.0     0.0073   15.6   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.055   12.0   0.1      0.083   11.4   0.1    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.6   0.0   3.8e-91   1.1e-87       6     360 ..      13     371 ..      10     372 .. 0.93

  Alignments for each domain:
  == domain 1  score: 294.6 bits;  conditional E-value: 3.8e-91
                      HHHHHHHHHTSS-SSS.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSS CS
  DegT_DnrJ_EryC1   6 eleaveevlksgwlts.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtyn 98 
                      e+++++ ++ sg+l   g ++++  + + +  g++ ++ + s+ta+l++a   ++++pgdeVI+ps+tFv+tana +  gak vfvDv pdt+n
       EHT98805.1  13 EIDYMQSAMSSGKLCGdGGFTRRCQQWMEQRFGSAKVLLTPSCTASLEMAALLIDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMN 106
                      67889999999988888***************************************************************************** PP

                      B-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS-EEEEESTHHHH CS
  DegT_DnrJ_EryC1  99 idpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGeGGavvtndeela 191
                      +d   ieaait +t+aI+pVh++G +++md + a+aa+++l vieDaA+++ ++ykg+ +G++g +++fSF++tKn  + GeGGa + nd+ l 
       EHT98805.1 107 MDETLIEAAITDKTRAIVPVHYAGVACEMDTIMALAAQYKLFVIEDAAQGVMSRYKGRALGTIGHIGCFSFHETKNYtAGGEGGATLINDASLV 200
                      *****************************************************************************8899************* PP

                      HHHHHHHBTTCECCTCSSCECCS......S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSS..SEEESC CS
  DegT_DnrJ_EryC1 192 ekarvlrnhGlkrkaekryvgev......elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketk..khawhl 277
                      e+a+++r +G +r   + ++g+v      ++G++y + ++qAA + aqLe  ++++++R +++++y ++L+ l ++  +t+p+  +  +h+ h 
       EHT98805.1 201 ERAEIIREKGTNR--SQFFRGQVdkytwrDMGSSYLMADLQAAYLWAQLEASERINQQRLRLWQRYYNALKPLAENGHITLPTVPAdcQHNAHM 292
                      **********997..445555555589999****************************************9999999999888888656***** PP

                      EEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 278 yavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                      + + ++++   +r++l++ lke++i +  hy +plh+ p+  +   + +gd   + + +er l Lpl  +l+++++ +V+++l
       EHT98805.1 293 FYIKLRDQ--EHRQALINWLKEAEILAVFHY-IPLHTSPAGLQFS-RFAGDDRFTTAESERLLRLPLFFNLSDNNQSTVISSL 371
                      ******88..37*******************.8******966554.3345666777779********************9986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.2   2.5e-12   7.5e-09      67     193 ..      46     158 ..      16     338 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.5e-12
                    GGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT- CS
  Aminotran_1_2  67 reaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtG 162
                        v++++ ++a +e+++ l++++pgde+++p+ t+ s  n++ l+g+++v + ++ ++++++d   +e+a+++      kt+ i+   p +  G
     EHT98805.1  46 SA-KVLLTPSCTASLEMAALLIDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVR-PDTMNMDETLIEAAITD------KTRAIV---PVHYAG 130
                    44.8999999*********************************************77.9****************......899998...99999* PP

                    -B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2 163 tvatleeleklldlakkynlllfvDeaYagf 193
                    +++  +++ +l   a +y+l+++ D a +++
     EHT98805.1 131 VACEMDTIMAL---AAQYKLFVIEDAAQGVM 158
                    *****999999...9999**99999885554 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   1.3e-09   3.8e-06      62     183 ..      47     160 ..      35     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.3e-09
                  GGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETT.SCBEGGGHHHH--TTEEEEEEESBETTTTEB--H CS
  Aminotran_5  62 eeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldee.geldldelekllnektklvaithvsnvtGtiqpv 158
                   +++ t ++t +++++al +   ++pgde+++ +    ++     ++   +gak++++ + ++  ++d   +e+++++kt+++   h     G+  ++
   EHT98805.1  47 AKVLLTPSCTASLEMAALLI--DIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDVRPDtMNMDETLIEAAITDKTRAIVPVHY---AGVACEM 135
                  68999*************99..6************999888....3344679*******9976257889999**********999996...799**** PP

                  HHHHHHHHHTT-EEEEE-TTTTTTS CS
  Aminotran_5 159 eeigklakkkgalvlvDaaqavghi 183
                  + i +la +++ +v+ Daaq+v+++
   EHT98805.1 136 DTIMALAAQYKLFVIEDAAQGVMSR 160
                  **********************986 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-06     0.003      49     143 ..      14     108 ..      10     166 .. 0.79
   2 ?   -3.1   0.0      0.82   2.5e+03      31      49 ..     326     344 ..     324     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-06
                 T---TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-B CS
    OKR_DC_1  49 aDlsievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgii 143
                 +D   + ++ g L    G +   q+++ + fg++k  +    T+s  ++ l   ++pgd v+++  +  S ++a vl ga+ v++    + + + 
  EHT98805.1  14 IDYMQSAMSSGKLCGDGGFTRRCQQWMEQRFGSAKVLLTPSCTASLEMAALLIDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNMD 108
                 56667777889999999*******************************************************************98876666543 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.82
                 GSHHHHHHHHHH-HHHHHT CS
    OKR_DC_1  31 kePagrlfydffGenllra 49 
                  +Pag +f  f G++ +++
  EHT98805.1 326 TSPAGLQFSRFAGDDRFTT 344
                 68************98875 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-06    0.0073      16     138 ..      15     134 ..       9     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-06
                      HHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHH.HHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC.C--EEEEE-EBTTT CS
  Beta_elim_lyase  16 daqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaA.nsillkillqrgeevivtepahihfdetgaiael.agvklrdlknkeaG 107
                      d++  am   +  g+   ++r ++ +++ fg +++l +p+ ta+ +  +l i +q+g+evi+  p+ ++  ++ a +   a + ++d++ +   
       EHT98805.1  15 DYMQSAMSSGKLCGDGGFTRRCQQWMEQRFGSAKVLLTPSCTASlEMAALLIDIQPGDEVIM--PSYTFVSTANAFVLRgAKIVFVDVRPDT-M 105
                      67766666667889999999***********************94555567888******97..6777777776665544455555555555.8 PP

                      BE-HHHHHHHS--S-TTS-EEEEEEEESSBT CS
  Beta_elim_lyase 108 kmdlekleaaikevgaheekiklisltvTnn 138
                      +md   +eaai+++ +  + +++ +  v+++
       EHT98805.1 106 NMDETLIEAAITDKTR--AIVPVHYAGVACE 134
                      999999*****99666..5555555555554 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.8e-05     0.083      66     141 ..      45     123 ..      33     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.8e-05
                      T-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST..TSHHHHHHHCCTTEEEE CS
  Cys_Met_Meta_PP  66 ggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkvlkklgievkfvdt..sdleelekaikentklv 141
                      g++++l+++s +a++++a l + ++ Gde+++ ++ + +t + +     k+       dt   d+  +e+ai+++t+++
       EHT98805.1  45 GSAKVLLTPSCTASLEMAALLIdIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTmnMDETLIEAAITDKTRAI 123
                      56788999999999876554443899***************999877777544444445522345569********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2884.19
//
Query:       EHT98806.1  [L=416]
Description: lipid III translocase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-07   30.2  17.9    2.9e-07   30.2  17.9    2.1  2  Polysacc_synt  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2  17.9   1.6e-11   2.9e-07       2     273 ..       4     283 ..       3     284 .. 0.84
   2 ?   -3.2   5.0      0.24   4.4e+03     109     180 ..     299     367 ..     293     406 .. 0.55

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.6e-11
  Polysacc_synt   2 lkgvivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrek.kelvslillnvllvllvlvllfllll 96 
                    +k + ++++s+l++  ++++++ +la+  gpeg+G+      ++t l +l++ G+ + ++ ++a+yr++ + l +l   ++ +v++ + ll+l++l
     EHT98806.1   4 AKASVWTASSTLVKIAVGLLVVKLLAISYGPEGVGQAGNFRQLITVLGVLAGAGIFNGVTTFVAQYRQQpQPLRALVGTASAMVTGFSTLLALVFL 99 
                    57788999*************************************************************844444444445555555555555555 PP

  Polysacc_synt  97 liaa.....flglpelavlylilalmll.llvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivsla 186
                    l aa     ++g  ++++ ++i+++++l + ++ a ++  l +g ++ + +a+  +  +++ v+  +++  l++ +++a+ g+++   +  i +l+
     EHT98806.1 100 LAAApvstaLFG--HDRYQNVIRIVAFLqFGIAWANLILALIKGYRDAQGNALALMTGSVTGVAGYMLCWGLGG-YAGALTGLAMVPALLVIPALV 192
                    554455534555..5556666666667766899999999***********************988777777777.999998877776666688888 PP

  Polysacc_synt 187 vlrkkfr........prfvilslklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfsel 273
                    ++r  +r        +++  +  ++ r+l ++++   i+ ++ ++ + + ++ l++  g  +vG ++++ +++ a  +++++ ++  l P++++l
     EHT98806.1 193 IFR--YRvplplswlRPQWQP--EMARQLAKYTLMALITAVTLPVAWVMMRNQLAAHNGWAQVGLWQGVTSISDAYLQFITATFSVWLLPTLARL 283
                    888..7667788887777777..**************************************************************8899*99986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.24
  Polysacc_synt 109 vlylilalmll.llvgva.sfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvg 180
                    +++++ a++ l + ++   + r  +  ++++m+ ++v+q+   ++ v   ++ vf+ l  v+a +++ +++l+ 
     EHT98806.1 299 FVLPAVAAASLiVWIMRDiAIRLLFSAAFHDMRDLFVWQLCGDVFKV---GAYVFGYL--VIAKASLRFYVLTE 367
                    44444444444334444404455555679999999999999888877...33333333..33333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3218.66
//
Query:       EHT98807.1  [L=355]
Description: 4-alpha-L-fucosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-160  534.1   0.0   1.9e-160  533.9   0.0    1.0  1  Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transf


Domain annotation for each model (and alignments):
>> Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transferase group 56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.9   0.0    1e-164  1.9e-160       3     356 ..       2     350 ..       1     352 [. 0.98

  Alignments for each domain:
  == domain 1  score: 533.9 bits;  conditional E-value: 1e-164
  Glyco_transf_56   3 tlihvlgsdiphhnqtvlrffndelaeelpeeqkrrfmvvskdealleaypaleievfadkkalakaviakakkdrkarfllhGqfnaslWlal 96 
                      tlihvlgsdiphhn tvlrffnd++++elp+  + +fmvv+++ ++l  + al+ie+f++kkal++a++++a k+r++rf+ hGqfn++lWlal
       EHT98807.1   2 TLIHVLGSDIPHHNLTVLRFFNDVMSTELPAPVACHFMVVTRQPESLIGFDALRIETFSSKKALSEALLRRA-KQREQRFFCHGQFNPWLWLAL 94 
                      79**********************************************************************.67999**************** PP

  Glyco_transf_56  97 llGklkaaqvlWhiWGadlyeessslkfrlfyllrrlaqkrvgrvfatrGdleylaqrakkvkdsllyfPtrmdealtlaeekeeeeekltill 190
                      l+G+l+++qv+Wh+WGadlye+s+slkfrlfy+lrr+aq+r++rvfat+Gdl +++qr+++v+ +llyfPtr+++a+ + + +    + lt+ll
       EHT98807.1  95 LSGRLHRSQVYWHVWGADLYEDSRSLKFRLFYFLRRIAQGRIARVFATEGDLYHYQQRHPSVPRTLLYFPTRLPTAAITPRPD----DILTVLL 184
                      *************************************************************************9998775543....469**** PP

  Glyco_transf_56 191 GnsGdrsnrhiaalkaikqqfgekvkvivPmGyPanneayieeveeaaerlfsaenveilreklefeeylallrqCdlGyfiferqqgiGtlcl 284
                      GnsGd snrh+++l+ai+ qfg++v++ vP+GyP nn++yi+++++aa rlf++++v++lre+l+f++ylall++C+lGyf+ferqqg+Gtlcl
       EHT98807.1 185 GNSGDASNRHTEGLEAIRAQFGQNVRIAVPLGYPPNNDEYIARIQNAADRLFPQGQVTLLRENLAFDDYLALLARCHLGYFMFERQQGVGTLCL 278
                      ********************************************************************************************** PP

  Glyco_transf_56 285 liqagiPlvlsrknpflqdlqeqqvpvlfaedeldeaavreakrqlasvdkekiaffapnylkgWkqalala 356
                      liqa+iP+vl+rknpf++d+++qq+pvlf++d+l+ a+v+ea+rql+ +dk+++af+ap+yl gW++al+l 
       EHT98807.1 279 LIQANIPFVLTRKNPFWRDVTAQQLPVLFSDDALTPAIVAEARRQLMGCDKQHVAFLAPGYLVGWQAALRLC 350
                      ********************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2711.41
//
Query:       EHT98808.1  [L=447]
Description: Enterobacterial Common Antigen (ECA) polysaccharide chain polymerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-242  805.2  38.5   1.8e-242  805.0  38.5    1.0  1  WzyE      WzyE protein, O-antigen assembly polymerase


Domain annotation for each model (and alignments):
>> WzyE  WzyE protein, O-antigen assembly polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  805.0  38.5  9.8e-247  1.8e-242       1     441 [.       1     441 [.       1     446 [. 0.99

  Alignments for each domain:
  == domain 1  score: 805.0 bits;  conditional E-value: 9.8e-247
        WzyE   1 mtllqfagllvvyllslllvatltykefrrvrfnfnvlfsllflltfyfgfpltsvlvfrfdvavvpaelllqallsatafyaiyyvsyktrlrkataa 99 
                 m+ll+f+gll+vy+lsl++++tl ++e+++ rfnf+++f+llflltfyfgfplts+lvfrfd +vvpa++llqa+lsatafy+iy+vsyk+rlr  +++
  EHT98808.1   1 MSLLAFSGLLLVYVLSLMIIVTLNVREMKQERFNFHLFFTLLFLLTFYFGFPLTSILVFRFDTQVVPADFLLQAMLSATAFYVIYFVSYKVRLRPMATS 99 
                 89************************************************************************************************* PP

        WzyE 100 prkplltlnrvetkltalllalvalvtvavfflknglllfklesysqifssevsgvalkrffyffipamlvvyflkqtrrawllflvstvafglltyvi 198
                 p +p+l++nrvet+lt+ llalva++tv+vff++ng+llf+l++y+qifssevsgvalkrffyffipaml+ yfl++trr+wllfl++tv fgllty +
  EHT98808.1 100 PARPWLQMNRVETHLTCGLLALVAIATVTVFFIHNGFLLFRLTAYNQIFSSEVSGVALKRFFYFFIPAMLIPYFLHPTRRNWLLFLIVTVSFGLLTYAL 198
                 *************************************************************************************************** PP

        WzyE 199 vggtraniiiafalflfigivrgwitlwmlaaagvvgivgmfwlalkrygldvsgdeafytflyltrdtfspwenlalllqnydkidfqglapivrdfy 297
                 vggtraniiiafalflfigi+rgwitlwmla agv++i+gmfwlal+ry+ldv+g+eafytflyltrdtfspwenlalll+ny+kidfqglap++rdfy
  EHT98808.1 199 VGGTRANIIIAFALFLFIGITRGWITLWMLAVAGVMAIAGMFWLALRRYNLDVMGAEAFYTFLYLTRDTFSPWENLALLLENYHKIDFQGLAPMWRDFY 297
                 *************************************************************************************************** PP

        WzyE 298 vfipswlwpdrpslvlnsanyftwevlnnhsglaisptligslvvmggvlliplgavvvgliikgfdalyergkqesnrykaavlqsfcfgavfnlivl 396
                 vfipswlwpdrp  vlnsanyftwevlnnhsglaisptligsl+vmgg+  i  gav+vgliikgfd ly+rg++esnry +a+lqsfcfgavfn+ivl
  EHT98808.1 298 VFIPSWLWPDRPLTVLNSANYFTWEVLNNHSGLAISPTLIGSLLVMGGIGAIVPGAVAVGLIIKGFDSLYKRGRSESNRYTGAILQSFCFGAVFNMIVL 396
                 *************************************************************************************************** PP

        WzyE 397 aregldafvsrvvffvvifgvcllvakllywlldsaglikartes 441
                 aregldaf srvvff++if++cl vaklly ll++ gli++r e 
  EHT98808.1 397 AREGLDAFGSRVVFFCLIFAACLAVAKLLYGLLNHVGLIRSRRER 441
                 ****************************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3098.68
//
Query:       EHT98809.1  [L=246]
Description: UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-52  178.0   0.3    1.9e-52  177.6   0.3    1.1  1  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family


Domain annotation for each model (and alignments):
>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.6   0.3   1.1e-56   1.9e-52       1     167 [.      65     231 ..      65     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.6 bits;  conditional E-value: 1.1e-56
  Glyco_tran_WecB   1 adlvlpDGigvvlaarlllgkplpervagidlieelleraeeeglrvfllGgkpevlekaaerlrekypglriagthdgy.keeeeeaiieain 93 
                      a++ +pDGi++v  +r    +   +r+ag+dl+e+l++ra +eg +vfl+Gg++ vl+++ ++lr+++ +++i+g+++gy  ++e ea++++i+
       EHT98809.1  65 AEFNYPDGISIVRSIRKKYPQASVQRIAGADLWEALMQRAGREGTPVFLIGGREAVLDETCAKLRRQW-NVNIVGAQNGYfVPSEREALCARIA 157
                      6789************555688899******************************************9.9**********878*********** PP

  Glyco_tran_WecB  94 askpdlllvglGapkqEkwiarlkeelkakviigvGaafdflagkvkraPkwmqklgleWlyRllkePkRlwrr 167
                      as+++l+ v++G+p+qE ++a+ +++ ++++++gvG++ d+++g+vkraP ++qklgleWlyRll +P+Rl+r+
       EHT98809.1 158 ASGAKLVTVAMGSPRQELFMADCQRQWPEALYMGVGGTYDVFTGHVKRAPVFWQKLGLEWLYRLLVQPSRLRRQ 231
                      **************************9888******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1990.60
//
Query:       EHT98810.1  [L=466]
Description: putative multidrug/homocysteine efflux system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-50  169.5  57.5    3.7e-43  147.8  48.1    2.4  2  MFS_1     Major Facilitator Superfamily
    1.9e-06   26.6  23.2    7.2e-05   21.4  10.5    2.2  2  MFS_3     Transmembrane secretion effector
    0.00012   21.5   9.8    0.00012   21.5   9.8    2.9  3  MFS_4     Uncharacterised MFS-type transporter YbfB
     0.0015   17.0  21.6     0.0025   16.3  21.6    1.4  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8  48.1   8.2e-47   3.7e-43       2     352 ..      16     405 ..      15     406 .. 0.94
   2 !   35.2   1.9   1.4e-12   6.4e-09      59     180 ..     324     454 ..     324     466 .] 0.77

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 8.2e-47
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++a+f+ +l+++il++alp a+a++l  sp +++ ++  y+l+ a ++++ G+l+drfG r+++++++ lf lg+l++++++sl +l+ +rv+qG+g++
  EHT98810.1  16 AMAFFMQSLDATILNTALP-AIATSLERSPLAMQSAVISYTLTVAMLIPVSGWLADRFGTRKIFIIAVSLFTLGSLACALSPSLSILVTSRVIQGVGGA 113
                 689****************.******************************************************77777745555************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 +++p++  ++ + +p++e    + ++++   +G+ilgpllgg++++++ W+++f+i+ +++ll++v +  ++p+  ++++r+     +           
  EHT98810.1 114 MMMPVARLALLRAYPRSELLPILNFVTMPGLVGPILGPLLGGIMVTYATWHWIFLINIPIGLLGIVYARKFMPDFTTPKRRFDFLGFLlfgiglvmist 212
                 ******************************************************************999999888888888877777799********* PP

       MFS_1 189 ................................kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllal 252
                                                 +++ p+pl++ + +++++     + ++++++ +   g   + +l+pl+lq  +g+s ++lag ++a 
  EHT98810.1 213 gielfgerivspwlaagvltggvvllllyiahARRHPSPLIN-LPMFKTRT----FSVGIIGNIASRLGtgcVPFLMPLMLQVGFGYS-AILAGCMMAP 305
                 ***************9*999**********************.99999999....66666666544444666****************.8999999999 PP

       MFS_1 253 lalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                 +a++++ ++  +++l++ +g rr l+ +  ++ ++ +++ l +++++ ++ll++l+l+G+++++ f+++++++   +  ++a   +++  ++++l++++
  EHT98810.1 306 TAIGSILAKQSVTQLLRWFGYRRLLVSITMIIGVMIASFSLQSPSEDIAFLLIPLFLLGMAMSTQFTAMNTITLADLDDDNASGGNSVLAVTQQLAISF 404
                 99999999*************9999999999999999999999999**************************************************999 PP

       MFS_1 352 g 352
                 g
  EHT98810.1 405 G 405
                 8 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 1.4e-12
       MFS_1  59 fGrrr.vlllglllfalglllllfa..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.... 149
                 fG rr ++ +++++ +   + +++   s    +ll+  +l G+++++ f+a+++++ +   +++ + ++++l+++ +l++ +g +++++++  +     
  EHT98810.1 324 FGYRRlLVSITMIIGVMI-ASFSLQspSEDIaFLLIPLFLLGMAMSTQFTAMNTITLADLDDDNASGGNSVLAVTQQLAISFGVAVSAAVLRFYQefds 421
                 566664444444444444.33333245444449**********************************************************77779*** PP

       MFS_1 150 .....Wravfyilaivsllafvlfllllpeepperk 180
                      ++++f+ ++iv++l+++ f +l    + + +
  EHT98810.1 422 ttveqFHSTFLTMGIVTVLSALTFTMLR---NGDGR 454
                 ********************99544443...33333 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4  10.5   1.6e-08   7.2e-05      21     176 ..      21     171 ..      10     189 .. 0.87
   2 !   10.9   4.8   2.4e-05      0.11     232     330 ..     275     376 ..     260     382 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.6e-08
       MFS_3  21 vsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaal 119
                 + +l + i + a   + t+++ spl++    ++ tL + +l  ++G laD f  Rk+++++ +l  l+s+  +++  l     ++l+++ ++ g+G a+
  EHT98810.1  21 MQSLDATILNTALPAIATSLERSPLAMQSAVISYTLTVAMLIPVSGWLADRFGTRKIFIIAVSLFTLGSLACALSPSL-----SILVTSRVIQGVGGAM 114
                 4566666777777788999*****99999999********************************99999888887665.....5677888899****** PP

       MFS_3 120 ndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavna 176
                 ++P  + ++    +r+++       ++   +    GP lgG++v+ +   + f +n 
  EHT98810.1 115 MMPVARLALLRAYPRSELLPILNFVTMPGLVGPILGPLLGGIMVTYATWHWIFLINI 171
                 ***************************999***********************9985 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.4e-05
       MFS_3 232 lsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalass...lwvavlvlllgGaaWitalst 327
                 l +  v  L+Pl+ +   +  a+  G +++   +G il+  ++++L + ++  rl+   ++ + ++++s +l s+   ++ +++ l l+G a  t ++ 
  EHT98810.1 275 LGTGCVPFLMPLMLQVGFGYSAILAGCMMAPTAIGSILAKQSVTQLLRWFGYRRLLVSITMIIGVMIASFSLQSPsedIAFLLIPLFLLGMAMSTQFTA 373
                 666777789***********************************************9999999999999999765111566777788999998888888 PP

       MFS_3 328 lnv 330
                 +n+
  EHT98810.1 374 MNT 376
                 875 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   9.8   2.6e-08   0.00012     194     339 ..      13     159 ..       3     168 .. 0.90
   2 ?    0.8   0.2     0.054   2.4e+02     143     176 ..     217     248 ..     190     280 .. 0.62
   3 ?   -1.5   6.7      0.26   1.2e+03      54     166 ..     325     446 ..     277     464 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.6e-08
       MFS_4 194 lalllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGlt 292
                 ++ ++a+++  +   i  t l+aia +  +++l+ + + + + l++++ + v+ ++a+r g+r+++ +a+ +  +g l++ lsps++ l+ s v+ G+ 
  EHT98810.1  13 WIAAMAFFMQSLDATILNTALPAIATSLERSPLAMQSAVISYTLTVAMLIPVSGWLADRFGTRKIFIIAVSLFTLGSLACALSPSLSILVTSRVIQGVG 111
                 5678899999999999*******************************************************************************9998 PP

       MFS_4 293 flaitalvlqlarelappat.rrllglmTasfgigQilGpllasllae 339
                   ++++++  +  + +p ++   +l ++T+   +g ilGpll +++  
  EHT98810.1 112 GAMMMPVARLALLRAYPRSElLPILNFVTMPGLVGPILGPLLGGIMVT 159
                 88888887655556666666599******************9998765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.054
       MFS_4 143 lglsasslWlalavlsavllllvalllpraalre 176
                 +g    s Wla++vl   ++ll++ ++   a+r+
  EHT98810.1 217 FGERIVSPWLAAGVLTGGVVLLLLYIAH--ARRH 248
                 3333444488888888766666666555..3333 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.26
       MFS_4  54 agaeRlr.llagllatvllllamaltesfaaflli.RflaGvasAvvlvfgsslv...lahaaaarrervgallfa.GvGlGiavsgllvllllqlgls 146
                     Rl     +++  +++ +    +++ +aflli  fl+G+a  + + ++ ++    l   +a++ ++v+a+     + +G+avs+ +  + ++++  
  EHT98810.1 325 GY-RRLLvSITMIIGVMIASFSLQSPSEDIAFLLIpLFLLGMAMSTQFTAMNTITladLDDDNASGGNSVLAVTQQlAISFGVAVSAAVLRFYQEFDST 422
                 22.233313333334445555566666777888773599********9999999934445567888899999875437999999999988887766554 PP

       MFS_4 147 assl....Wlalavlsavllllva 166
                          l ++++ ++  l  +
  EHT98810.1 423 TVEQfhstFLTMGIVTVLSALTFT 446
                 443322335555555444444443 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  21.6   5.7e-07    0.0025      64     465 ..      30     416 ..       3     442 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.7e-07
       TRI12  64 asalpnilqdvgqsensslfstl..wttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelms 160
                  +alp i   + +s    + s++  +t+  a+ i v g l+drfg r + i++  l  +g++  + +  +  l+++  + gv  g a   p+    l+ 
  EHT98810.1  30 NTALPAIATSLERSPLA-MQSAVisYTLTVAMLIPVSGWLADRFGTRKIFIIAVSLFTLGSLACALSPSLSILVTSRVIQGV--GGAMMMPVARLALLR 125
                 24555555555555432.333331278888888999*********9887777777777899988888899999999888888..445555555444444 PP

       TRI12 161 ..nktkflgll.ivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfll 256
                    ++ +l +l  v++p +v   l+p lg  +    +w wif i i +  + ++      + p f+        kr    + d++g +l  +g  ++  
  EHT98810.1 126 ayPRSELLPILnFVTMPGLVGPILGPLLGGIMVTYATWHWIFLINIPIGLLGIV--YARKFMPDFTT------PKR----RFDFLGFLLFGIGLVMIST 212
                 114677888763699***************************998865544332..22345555543......333....4778888888888888888 PP

       TRI12 257 gvs.wggkpnspwnsakviglissglgslvvfalyevygk.pvrpivppalfkdtrgfvcill..issimgamnlslviiypqqvvnifgsslknweet 351
                 g+  +g +  spw +a    +++ g   +v++ ly  + +    p++   +fk tr f + ++  i+s +g+   ++  + p  +   fg s       
  EHT98810.1 213 GIElFGERIVSPWLAAG---VLTGG---VVLLLLYIAHARrHPSPLINLPMFK-TRTFSVGIIgnIASRLGT--GCVPFLMPLMLQVGFGYSAI--LAG 300
                 8763577899***9985...56655...67777777776514589***99**9.677753222125666665..46667777777667777643..233 PP

       TRI12 352 awmsatasfgtgagvvvlgslfhlvrhirwqilvgalwltaflgam.ssvnrdnknaaialsvlsgfvvawaqditmllvqfit...t.dedlgvafav 445
                 + m+ t ++g    ++   s+ +l+r   ++ l+ +  +t ++g m +s   +     ia+ ++  f+++ a    +  ++ it     d++     +v
  EHT98810.1 301 CMMAPT-AIG---SILAKQSVTQLLRWFGYRRLLVS--ITMIIGVMiASFSLQSPSEDIAFLLIPLFLLGMAMSTQFTAMNTITladLdDDNASGGNSV 393
                 344443.344...35566788888888888766543..4556666534566666677777777888887777665555545444222324455556677 PP

       TRI12 446 vaaarpfa...gsiftaafisly 465
                 +a ++ +a   g  ++aa++  y
  EHT98810.1 394 LAVTQQLAisfGVAVSAAVLRFY 416
                 77776654111344444554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3391.33
//
Query:       EHT98811.1  [L=330]
Description: DNA-binding transcriptional repressor of ribose metabolism [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-44  150.2   0.0    1.2e-43  149.3   0.0    1.5  1  Peripla_BP_3  Periplasmic binding protein-like domain
    8.5e-33  114.0   0.0    1.1e-32  113.6   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    9.5e-21   73.3   0.2    1.7e-20   72.5   0.2    1.5  1  LacI          Bacterial regulatory proteins, lacI family
      2e-19   70.2   0.0    2.8e-19   69.7   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0047   16.3   0.2     0.0093   15.4   0.2    1.5  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0069   16.1   0.1      0.076   12.8   0.0    2.5  2  HTH_38        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.025   14.9   0.0    1.5  1  HTH_31        Helix-turn-helix domain
      0.032   14.3   0.0      0.083   13.0   0.0    1.7  1  HTH_3         Helix-turn-helix
      0.043   13.6   0.0      0.098   12.5   0.0    1.6  1  HTH_23        Homeodomain-like domain
       0.07   13.3   0.0       0.14   12.3   0.0    1.5  1  HTH_17        Helix-turn-helix domain
      0.074   12.8   0.0        0.2   11.4   0.0    1.7  1  MerR          MerR family regulatory protein


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0   7.6e-47   1.2e-43       1     166 []     169     330 .]     169     330 .] 0.94

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 7.6e-47
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   ++hL++ G+ ria+i+  g+ +++ +++r++gf qa++++gl++++ +v + d++ a++++a+    +l +l ++P+Av+  +D++A+gv+ al++a
    EHT98811.1 169 TQHLIDSGYSRIACIS--GPLDKTPARMRLEGFHQAMQKNGLEVPPDYVVSGDFEFAGGYNAMF---ELlALDTPPHAVFTSNDAMAVGVYHALHQA 260
                   69**************..9999****************************************99...34377779********************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   gl++P+d +v+g+dd ela+++sPpl+t++qp +elG+ a+++l+ +l++++  +++ +l pelv+R+S+
    EHT98811.1 261 GLQIPQDMAVMGYDDVELARYMSPPLSTIHQPKDELGELAIDTLIYRLSNPDVSQQTLVLTPELVPRGSV 330
                   ************************************************6666666666699********7 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   6.8e-36   1.1e-32       1     258 [.      59     307 ..      59     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 6.8e-36
                   -EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS CS
  Peripla_BP_1   1 tlklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgv 95 
                   t+++g++l  +++Pf++++v g++    e g+ ++l ++ ++ed   + ++ l++k++dgl+i     + ++    +++  ip+++++ a  +    
    EHT98811.1  59 THTIGMLLTASSNPFYAEVVRGVEDSCYERGYSLILCNTAGDEDRMnRSLETLLQKRVDGLLIMCTESHLPSAEILNRYpSIPMVMMDWAPFEG--R 153
                   689************************************999999989**************9988999899999999999*******994444..4 PP

                   -EEEE-HHHHHH.HHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSH CS
  Peripla_BP_1  96 Pcvipddtqage.estqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaind 189
                     +i d+   g   +tq+Li  g+ r ia+++gp  +  a+ r +Gf +a+++ Glev  + v +g+ +  ++++a+ ell     P   a+ + nd
    EHT98811.1 154 GDIIQDNALLGGeLATQHLIDSGYSR-IACISGPLDKTPARMRLEGFHQAMQKNGLEVPPDYVVSGDFEFAGGYNAMFELLALDtpPH--AVFTSND 247
                   45888966665449************.*******************************************************999677..******* PP

                   HHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHH CS
  Peripla_BP_1 190 eaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqk 258
                    +a+G + al ++G l+i+++      +v++yd     +      +pl +i  p+++lG  a d ++  
    EHT98811.1 248 AMAVGVYHALHQAG-LQIPQDM-----AVMGYDDV---ELARYMSPPLSTIHQPKDELGELAIDTLIYR 307
                   **************.*******.....******99...67778899*************9999988764 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.2   1.1e-23   1.7e-20       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.1e-23
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+kDVArlAGVS++TVS+v+n+++ Vs+  re++e+a++ lnY+P+
  EHT98811.1  3 TMKDVARLAGVSTSTVSHVINKNRFVSDGVREKIEQAIRDLNYAPS 48
                9*******************************************97 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.7e-22   2.8e-19       1     251 [.      62     305 ..      62     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.7e-22
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHH.HHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstala.palkkakaaGIpVvafdsddapsger 96 
                   ig++++++snpf  ++  g+e+ + e g++ ++  ++ +d  +++  +e++++k vdg+++  ++s   + ++l++     Ip+v +d +  p + r
    EHT98811.1  62 IGMLLTASSNPFYAEVVRGVEDSCYERGYSLILC-NTAGDEDRMNRSLETLLQKRVDGLLIMCTESHLPSaEILNRYP--SIPMVMMDWA--PFEGR 153
                   899********9999******************7.*************************999999888889****98..79********..99999 PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHH.TTTECEEEESS CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqaleallt.anpldgilaan 191
                      ++ +    Gel+ + l +   +    ++ ++G ++ + a+ r+egf++++++ +g+++ ++++  ++ + + +++a+ +ll+   p  ++++ n
    EHT98811.1 154 GDIIQDNALLGGELATQHLIDSGYS---RIACISGPLDKTPARMRLEGFHQAMQK-NGLEVPPDYVvSGDFEFAGGYNAMFELLAlDTPPHAVFTSN 246
                   9999999999999999999999985...5**************************.99999998776778***************65589******* PP

                   CCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHH CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelav 251
                   d+ma g+  al +agl+  +  + +++++  l++  +  ++ t+ q+  elg+ a++++ 
    EHT98811.1 247 DAMAVGVYHALHQAGLQIPQDMAVMGYDDVELARYMSPPLS-TIHQPKDELGELAIDTLI 305
                   ****************6554577777778888777777777.999999999999999986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   5.7e-06    0.0093      27      45 ..       1      19 [.       1      24 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.7e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVw 45
                  ++++k+vAr+ gvS++TV 
    EHT98811.1  1 MATMKDVARLAGVSTSTVS 19
                  68****************7 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.7e-05     0.076      22      44 .]       3      25 ..       2      25 .. 0.92
   2 ?   -0.1   0.0       0.5   8.2e+02      10      31 ..      33      55 ..      29      59 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.7e-05
      HTH_38 22 slreIArrLgrspsTIsRElkRn 44
                +++++Ar+ g+s+sT+s  + +n
  EHT98811.1  3 TMKDVARLAGVSTSTVSHVINKN 25
                899***************99877 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.5
      HTH_38 10 ReeIerl.laeGlslreIArrLg 31
                Re+Ie+  ++ ++  ++ Ar L+
  EHT98811.1 33 REKIEQAiRDLNYAPSALARSLK 55
                67777773356677777777765 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.5e-05     0.025      16      53 ..       3      39 ..       2      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavlealara 53
                + ++vA+++gvs st+s++ +  r  +s +v e++ +a
  EHT98811.1  3 TMKDVARLAGVSTSTVSHVINKNR-FVSDGVREKIEQA 39
                5689********************.8****99999887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.1e-05     0.083      11      32 ..       3      24 ..       3      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.1e-05
                HHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG 32
                +++++A+++Gvs st+s+ +n 
  EHT98811.1  3 TMKDVARLAGVSTSTVSHVINK 24
                789***************9985 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     6e-05     0.098      19      40 ..       3      24 ..       2      38 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                + +++Ar+ gvs +Tv++++++
  EHT98811.1  3 TMKDVARLAGVSTSTVSHVINK 24
                789****************665 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-05      0.14       3      30 ..       3      29 ..       2      41 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-05
      HTH_17  3 tveEaAelLgvsrstvyrlirrgelpaa 30
                t +++A+l gvs stv   i+++++ + 
  EHT98811.1  3 TMKDVARLAGVSTSTVSHVINKNRF-VS 29
                789*******************999.65 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012       0.2       1      16 [.       3      18 ..       3      25 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                t+++vA+l+Gvs++t+
  EHT98811.1  3 TMKDVARLAGVSTSTV 18
                89*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2530.22
//
Query:       EHT98812.1  [L=309]
Description: ribokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-74  251.6   6.1    1.2e-74  251.4   6.1    1.0  1  PfkB            pfkB family carbohydrate kinase
      2e-13   50.3   0.5    2.8e-13   49.8   0.5    1.1  1  Phos_pyr_kin    Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
       0.13   11.7   3.3       0.51    9.8   0.1    2.4  2  Carb_kinase     Carbohydrate kinase
       0.15   11.8   0.0       0.27   11.0   0.0    1.3  1  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   6.1   2.6e-78   1.2e-74       2     301 ..       5     297 ..       4     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 251.4 bits;  conditional E-value: 2.6e-78
                 EEEEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEET CS
        PfkB   2 tkvvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvd 98 
                 +k++v+G+++ d i++   +  +ge+v +++++  +GG+gaN+Ava+ r gad afi +vG D++Ge++ ++l+++++dt+ v++ e+++tg+a+i+v+
  EHT98812.1   5 AKLAVLGSINADHILNLAHFprPGETVIGQKYQIAFGGKGANQAVAAGRAGADIAFIACVGADDIGERVCQQLAQDKIDTQPVEVIEGESTGVAMIFVN 103
                 589*************9988*9***************************************************************************** PP

                 TTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES....EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHH CS
        PfkB  99 edgertivfnrgaaadltkeeleededlleeadllyisg....llsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeE 193
                 ++ge++i ++ ga+a+lt++       +++  + + i+g    l++ e+p +++ ++a++a++++  ++++l+p++a      ++llal+d+++pne+E
  EHT98812.1 104 GEGENNIGIYSGANAALTPA-------YVARHQQV-IAGadalLMQLESPLDSVVAAATLARQHQ--TQVILNPAPA--TALPDSLLALVDVITPNETE 190
                 *******************5.......44444433.33347888889******************..9********6..56778888************ PP

                 HHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTS CS
        PfkB 194 lealtgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqk 292
                 +e+ltg +  + e+a++a+ +l++kg+ tv++tlG +G++++ek++ ++v   + vk+vDt++AGD+f+g+f+ a legk + +a+rfa+a+Aa++v++
  EHT98812.1 191 AEILTGIAVRNDEDAARAAAALHNKGIPTVLITLGRRGVWLSEKGQGQRVAG-FDVKAVDTIAAGDTFNGAFITARLEGKAMLDAVRFAHAAAAIAVTR 288
                 *********999999999999999****************************.77******************************************** PP

                 SSSSTCSCC CS
        PfkB 293 kgaiaslpt 301
                 +ga+ s+p+
  EHT98812.1 289 SGAQPSVPW 297
                 ****99986 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.5   6.2e-17   2.8e-13      98     230 ..     159     284 ..     127     293 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 6.2e-17
                   CTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S CS
  Phos_pyr_kin  98 ksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietk 194
                   ++ + +l++    al ++Ll l++vitPN  Eae L+g  +++ ed+ +aa +l++ g  +Vli+ g+    + v   +l ++++ +++ +  ++  
    EHT98812.1 159 HQTQVILNPAPATALPDSLLALVDVITPNETEAEILTGIAVRNDEDAARAAAALHNKGIPTVLITLGR----RGV---WLSEKGQGQRVAGFDVKAV 248
                   3345578888999*****************************************************98....355...78899999*********** PP

                   --BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHH CS
  Phos_pyr_kin 195 nthGtGCtlssaiaaelakgesleeAvkkAkeyvte 230
                   +t  +G+t+  a  +   +g+ + +Av+ A++    
    EHT98812.1 249 DTIAAGDTFNGAFITARLEGKAMLDAVRFAHAAAAI 284
                   *********98877777789********99876555 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.9     0.041   1.8e+02      18     111 ..      48     145 ..      39     172 .. 0.58
   2 ?    9.8   0.1   0.00011      0.51     121     170 ..     183     233 ..     179     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.041
                  HHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTTHTTTS...--SSS-SEEEE-TT-SSSHCHHH......HCHHHCCCCS-EEEEGGGGGSGGG CS
  Carb_kinase  18 alaalrlgaglvsvateseaiavlksylpevivhplledeqakileklerldavviGpGLgrdekikk......lleevlekdeplviDAdgLnllaq 109
                  a aa r+ga++  +a+   a    +  +++++ ++++ ++ ++++e +++  a++  +G g+++ +        l     ++++ ++  Ad+L +  +
   EHT98812.1  48 AVAAGRAGADIAFIAC-VGADDIGERVCQQLAQDKID-TQPVEVIEGESTGVAMIFVNGEGENNIGIYsganaaLTPAYVARHQQVIAGADALLMQLE 143
                  6677777777777777.55555566666666666666.555566666666666666666666655433444454455556666667777777766544 PP

                  G. CS
  Carb_kinase 110 kn 111
                    
   EHT98812.1 144 SP 145
                  43 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00011
                  EEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHH.HTTEEEEESTTSEEEEC CS
  Carb_kinase 121 iLTPhkkEfkrLlkaivkkeddrlelarelaqk.lnavvllkgekdvivsp 170
                  ++TP+  E + L++ +v +++d + +a++l +k +++v +  g   v  s+
   EHT98812.1 183 VITPNETEAEILTGIAVRNDEDAARAAAALHNKgIPTVLITLGRRGVWLSE 233
                  89***************9999999998888877244444555666555555 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.27      45      80 ..     186     221 ..     174     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C  45 agekngkvLvgvevsqaeeldelierleklgykved 80 
                      +e ++++L g+ v+++e+ +  ++ l+++g+ ++ 
      EHT98812.1 186 PNETEAEILTGIAVRNDEDAARAAAALHNKGIPTVL 221
                     57799**************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2416.99
//
Query:       EHT98813.1  [L=292]
Description: periplasmic-binding component of an ABC superfamily D-ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-59  200.2   7.7    4.9e-59  200.0   7.7    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    7.3e-28   97.8   1.0    8.8e-28   97.5   1.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.2e-14   55.0   0.0    5.3e-14   52.9   0.0    1.8  2  Peripla_BP_3  Periplasmic binding protein-like domain
    6.6e-14   52.3   4.5    1.1e-13   51.6   4.1    1.4  2  Peripla_BP_6  Periplasmic binding protein
    0.00025   20.4   6.1        0.1   11.8   0.9    2.4  2  ABC_sub_bind  ABC transporter substrate binding protein
     0.0058   16.9   0.0       0.08   13.2   0.0    2.3  2  PucR          Purine catabolism regulatory protein-like famil
  ------ inclusion threshold ------
      0.082   12.0   0.0       0.65    9.0   0.0    2.0  2  ANF_receptor  Receptor family ligand binding region
       0.11   11.9   0.0       0.23   10.8   0.0    1.5  1  IPT           Isopentenyl transferase
       0.14   12.4   0.2         24    5.2   0.0    2.7  3  PCP_red       Proto-chlorophyllide reductase 57 kD subunit


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   7.7   2.5e-62   4.9e-59       1     258 []      26     278 ..      26     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 2.5e-62
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   i++v+++ +npff ++++g+++ a++lg++ +v  d++n+ a++ a+++d+  +g ++++++p+ds+ +  a+k a++a+IpV++ d+  a++g ++
    EHT98813.1  26 IALVISTLNNPFFVSLKDGAQKEADKLGYNLVVL-DSQNNPAKELANVQDLTVRGTKALLINPTDSDSVGNAIKLANQAKIPVITLDRV-AAQGTVV 120
                   799**************************99996.******************************************************.******* PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCC CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandg 193
                   ++v+ dn   G+++++ +a+klg++ +k++ l+G +g+++a+er egf k+ ++  ++k++a+ ++a+ d++k+ + +++ll+a+p +++++a nd+
    EHT98813.1 121 SHVASDNRFGGKMAGDFIARKLGDG-AKIIELEGIAGTSAARERGEGFQKAVDA-HKFKVLAS-QPADFDRTKGLNVMQNLLQAHPdVQAVFAQNDE 214
                   *************************.*************************999.8*****96.666*****************966********** PP

                   HHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 194 maegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   ma+gal+al+ ag+++  +v+g+D+tp  ++a++ G++ atvaq p ++g  +v++a ++lkG+k
    EHT98813.1 215 MALGALRALQTAGKTDV-LVVGFDGTPDGVKAVEGGKLAATVAQMPEKIGMIGVQTADKVLKGEK 278
                   *************8655.6********************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   1.0   4.4e-31   8.8e-28       2     257 ..      24     275 ..      23     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 4.4e-31
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE.-S-GG.HHHHHHHHHHT-EEEEESS--B-TTTS CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliia.tsdts.fdditakaesgipvialedaidapdgv 95 
                   +++ lv+  l++Pff++l  g++k+a ++g+++++l  ++++  + + ++ l  +g ++l+i  t  +s +++i+  +++ ipvi l++++ +  +v
    EHT98813.1  24 DTIALVISTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKElANVQDLTVRGTKALLINpTDSDSvGNAIKLANQAKIPVITLDRVAAQG-TV 119
                   7899************************************999988****************9877777899999998889*********9998.88 PP

                   -EEEE-HHHHHHHHHHHHHHHHHHHT..GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHH CS
  Peripla_BP_1  96 PcvipddtqageestqkLiaeghkrp..iallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivainde 190
                    + +  d++ g +     ia+  + +  i+ leg +  ++a+er +Gf  a+ ++   +k       + d++++ + +++ll+ hP+++a+ a+nde
    EHT98813.1 120 VSHVASDNRFGGKMAGDFIARKLGDGakIIELEGIAGTSAARERGEGFQKAVDAH--KFKVLASQPADFDRTKGLNVMQNLLQAHPDVQAVFAQNDE 214
                   8888889999999999999999999989***************************..679999999999**************************** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEE..E-HHHH......HHHHHHHHHH CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelspl..aviqlprel..lGrkasdmvlq 257
                   +alGa +al+ +G    k +v      vv++dg    +++ +e++ l  +v+q+p ++  +G + +d+vl+
    EHT98813.1 215 MALGALRALQTAG----KTDV-----LVVGFDGT-PDGVKAVEGGKLaaTVAQMPEKIgmIGVQTADKVLK 275
                   *************....7777.....77888887.556666776665225777776533388899988876 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.7   1.4e+03      12      62 ..      26      74 ..      23     116 .. 0.72
   2 !   52.9   0.0   2.7e-17   5.3e-14      19     150 ..     153     280 ..     141     291 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.7
                  EEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH. CS
  Peripla_BP_3 12 iafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaara 62
                  ia++   +  ++++   +++g+++++ +lg++l +   +++++ + a +++
    EHT98813.1 26 IALVI--STLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD 74
                  56666..45556778888999999999999998888887777766665555 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 2.7e-17
                   TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-.S-SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS-- CS
  Peripla_BP_3  19 gdrgasasderergfrqaleelglplnetvv.aaddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalreaglrvPedlsvigfdds 112
                   g  g+sa++er +gf++a+ ++++++ + +  + d+  + + +++ l  q     a+P+  Av+a++De+Alg+l+al+ ag     d+ v+gfd++
    EHT98813.1 153 GIAGTSAARERGEGFQKAVDAHKFKVLASQPaDFDRTKGLNVMQNLL--Q-----AHPDvqAVFAQNDEMALGALRALQTAGK---TDVLVVGFDGT 239
                   6678899******************6665540444444333333322..3.....366455**********************...6********** PP

                   SCC.CSSSS.--.EEEE--HHHHHHHHHHHHHHHHTT---S CS
  Peripla_BP_3 113 ela.alssP.pl.TtvrqpleelGraaaellldllegekap 150
                   +   + +   +l  tv+q +e++G   +++  ++l+gek +
    EHT98813.1 240 PDGvKAVEGgKLaATVAQMPEKIGMIGVQTADKVLKGEKVQ 280
                   99988888877767*********************887754 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.33   6.5e+02     135     167 ..      23      57 ..      14      59 .. 0.79
   2 !   51.6   4.1   5.4e-17   1.1e-13      44     245 ..      55     256 ..      54     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.33
                   SCEEEEE..EESSHHHHHHHHHHHHHHHCCTEEEE CS
  Peripla_BP_6 135 gkkvalv..yadyafgregiaalkaaakaaGgevv 167
                   + ++alv  + +++f  ++ +++++ a ++G+++v
    EHT98813.1  23 KDTIALVisTLNNPFFVSLKDGAQKEADKLGYNLV 57 
                   457776644688*******************9944 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 5.4e-17
                   EEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTT.SCEEE CS
  Peripla_BP_6  44 elverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelg.gkkva 139
                   +lv+ D +++p++ ++++++l  ++  ++l+ p+ s+ +  + ++++++++pvi+   ++  ++   v +++ +++  ++ +++++a++lg g k+ 
    EHT98813.1  55 NLVVLDSQNNPAKELANVQDLTVRGTKALLINPTDSDSVGNAIKLANQAKIPVITL--DRVAAQGTVVSHVASDNRFGGKMAGDFIARKLGdGAKII 149
                   5899*******************999999**************************7..44456677777889999999************9988888 PP

                   EEE..ESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHH CS
  Peripla_BP_6 140 lvy..adyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagada.vllagtgadlaallkaaaeaGldakrillvswsgseedlk 233
                    +   a +++ re  +++++a+ a+ ++v+++ p +++ t   ++++++ +a++d+  ++a   +++  +l+a+++aG +   +l+v+++g++  +k
    EHT98813.1 150 ELEgiAGTSAARERGEGFQKAVDAHKFKVLASQPADFDRTKGLNVMQNLLQAHPDVqAVFAQNDEMALGALRALQTAGKTD--VLVVGFDGTPDGVK 244
                   7754677**************************************************666777789**************5..9************* PP

                   HHHHHHHTTEEE CS
  Peripla_BP_6 234 alggeaaegvla 245
                   a++g++++ ++a
    EHT98813.1 245 AVEGGKLAATVA 256
                   **9987766554 PP

>> ABC_sub_bind  ABC transporter substrate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.2   7.7e-05      0.15     202     247 ..      95     140 ..      38     152 .. 0.66
   2 !   11.8   0.9   5.1e-05       0.1     177     262 ..     197     287 ..     155     291 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
                   HHHHHHHHTT--EEESSHHHHHTT-SEEEE--HHHH.HHHHHHHHHH CS
  ABC_sub_bind 202 avvkaanqakiPviasddesvkegalaalgvnekel.Gvqagkvvvk 247
                     +k anqakiPvi+ d +++ +g++++ +       G+ ag+ +++
    EHT98813.1  95 NAIKLANQAKIPVITLD-RVAAQGTVVSHVASDNRFgGKMAGDFIAR 140
                   34688*********975.67889999997666655516778887765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.1e-05
                   HHHHHHTT-SEEEE-S-HHHHHTHHHHHHHHHHTT--EEESS..H...HHHHTT-SEE.EE--HHHHHHHHHHHHHHHHTT--GGGS--EE- CS
  ABC_sub_bind 177 avsslaekvdaiyiltdnliasafeavvkaanqakiPviasd..d...esvkegalaa.lgvnekelGvqagkvvvkiLkGkkpkdipvsra 262
                      ++  +v+a+++ +d +   a+ a+ +a++     v   d  +   ++v+ g laa +++    +G+   + + k+LkG+k++ + +++ 
    EHT98813.1 197 NLLQAHPDVQAVFAQNDEMALGALRALQTAGKTDVLVV-GFDgtPdgvKAVEGGKLAAtVAQMPEKIGMIGVQTADKVLKGEKVQAVYPVDL 287
                   44455678999999999999999999887777665544.3331122226788888866155556789******************9988776 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.17   3.4e+02      68     102 ..      22      61 ..      14      64 .. 0.82
   2 !   13.2   0.0     4e-05      0.08      54     113 ..      63     123 ..      58     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
        PucR  68 eagvaaLvikl.g.r...eipeelieaadelglPlielpe 102
                 +++  aLvi + + +   ++++ + + ad+lg  l++l++
  EHT98813.1  22 AKDTIALVISTlNnPffvSLKDGAQKEADKLGYNLVVLDS 61 
                 56678999999545377899*************9999976 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4e-05
        PucR  54 ddpealaelvrelaeagvaaLviklgr.eipeelieaadelglPlielpeevpfveiieev 113
                 ++p++  + v++l  +g  aL i+  + +   ++i++a+++++P+i+l++      ++++v
  EHT98813.1  63 NNPAKELANVQDLTVRGTKALLINPTDsDSVGNAIKLANQAKIPVITLDRVAAQGTVVSHV 123
                 5777888889***************74477899***************9988777777766 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00033      0.65      24      80 ..      51     110 ..      42     134 .. 0.83
   2 ?    0.7   0.0      0.11   2.2e+02     134     203 ..     162     230 ..     155     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00033
                   EEEEEE..EE-TT-HHHHHHHHHHHCC.CCEEEEEE-SSHHHHHHHHHHHCCTT-EEEES CS
  ANF_receptor  24 klgyei..idtccdfslaleaaldflk.gkvvaviGpssssvsdavaslanlfkiPvisy 80 
                   klgy    +d+++++++ l+ ++d+   g  + +i p+ s+++  + +lan++kiPvi+ 
    EHT98813.1  51 KLGYNLvvLDSQNNPAKELANVQDLTVrGTKALLINPTDSDSVGNAIKLANQAKIPVITL 110
                   67777667****************987255666788**********************64 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.11
                   HHHHHHHHHHHHTT-EEEEEEEEST.CHHHCHHHHHHHHHHTTT--EEEEEE-H.HHHHHHHHHHHHTTS-S CS
  ANF_receptor 134 sglqaleeeleergicvalkekipe.ssnddevvrkllkeikskarvivlfcss.edarellkaarrlgltg 203
                   ++ + ++++ +++ ++v  ++  +  +++  +v+++ll   + +++v  +f+++ e+a   l+a + +g t+
    EHT98813.1 162 ERGEGFQKAVDAHKFKVLASQPADFdRTKGLNVMQNLL---QAHPDVQAVFAQNdEMALGALRALQTAGKTD 230
                   66677777777777777776666643333336666665...6677777777777666666666666666665 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.23       7      37 ..      85     115 ..      80     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
         IPT   7 fGatttGKtaeaiklaketgapvivlDRvqc 37 
                   +t +    +aikla++  +pvi+lDRv +
  EHT98813.1  85 INPTDSDSVGNAIKLANQAKIPVITLDRVAA 115
                 56677777789*****************964 PP

>> PCP_red  Proto-chlorophyllide reductase 57 kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.012        24      13      38 ..      36      59 ..      19      61 .. 0.85
   2 ?    4.3   0.0     0.024        47      23      42 ..      95     114 ..      94     116 .. 0.89
   3 ?   -3.3   0.1       5.6   1.1e+04      27      33 ..     159     165 ..     158     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.012
                -HHHHHHHHHHHHHHHHHHT-SEE-H CS
     PCP_red 13 PffvRkkaRraaEklArerGleeVtv 38
                Pffv   +++ a k+A + G++ V +
  EHT98813.1 36 PFFV--SLKDGAQKEADKLGYNLVVL 59
                ****..***************99976 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
                 HHHHHHHHHT-SEE-HHHHH CS
     PCP_red  23 aaEklArerGleeVtvevve 42 
                 +a klA ++ ++ +t+++v 
  EHT98813.1  95 NAIKLANQAKIPVITLDRVA 114
                 6889*************996 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.6
                 HHHHHT- CS
     PCP_red  27 lArerGl 33 
                 +ArerG+
  EHT98813.1 159 AARERGE 165
                 799*996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2108.86
//
Query:       EHT98814.1  [L=323]
Description: membrane component of an ABC superfamily D-ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-53  180.4  41.5    3.8e-53  180.4  41.5    1.4  2  BPD_transp_2     Branched-chain amino acid transport system /
  ------ inclusion threshold ------
        1.3    9.6   7.7        2.2    8.9   1.4    2.6  2  MccV             Microcin V bacteriocin


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.31   2.8e+03     127     145 ..      11      33 ..       4      36 .. 0.52
   2 !  180.4  41.5   4.3e-57   3.8e-53       1     267 [.      46     314 ..      46     315 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.31
  BPD_transp_2 127 lsflsaviv....llalllvlav 145
                   ++f++a++     l+al++++av
    EHT98814.1  11 RWFSKAWLLeqksLIALIVLIAV 33 
                   55555555566654444444444 PP

  == domain 2  score: 180.4 bits;  conditional E-value: 4.3e-57
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   +++n+l ++++ ai+A+G++lv+ ++ +i+l++g+++al + vaa l+ +  +  ++a++++l++gaa+g+++g++v+r kv+ +i+tl ++++l+g
    EHT98814.1  46 NLFNILQQTSVNAIMAVGMTLVI-LTSGIDLSVGSLLALTGAVAASLVGMEVN-AFVAVAASLVLGAAIGAVTGTIVARGKVQAFIATLVMMLLLRG 140
                   689********************.****************8888887777665.9****************************************** PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaG 194
                   +t  ++t+++  ++g +   +l+g+ g  ++ +    v+l++l+ +a++++l++tr+Gr ++a+g+ne a r++Ginv+rvk++++ +sg+lA+laG
    EHT98814.1 141 VTM-VYTNGSPVNTGFNDNADLFGWIGIGRPLGIPTPVWLMALVFVAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNRVKVIVYSLSGMLAALAG 236
                   ***.***********************9999999888899999999*************************************************** PP

  BPD_transp_2 195 allalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                    + +++l s++p +g+g++++aiaavvlGg+      g+++gt+iGali+g++++ +l+l+g+++ +++++  ++++l+
    EHT98814.1 237 SIEVARLSSAQPTAGTGYELDAIAAVVLGGTslaggkGRVVGTLIGALILGFLNN-GLNLMGVSSYYQMIVKAVVILLA 314
                   *******************************************************.*******9999999999998887 PP

>> MccV  Microcin V bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.4   0.00024       2.2      15      53 ..      88     127 ..      74     138 .. 0.80
   2 ?    3.7   0.6      0.01        91      24      52 ..     258     286 ..     237     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00024
        MccV  15 agddsgrdiakgigaaagtfvaGaiGaivggiva.gavyd 53 
                 a    g ++   ++ aa+ +++ aiGa++g+iva g+v +
  EHT98814.1  88 AASLVGMEVNAFVAVAASLVLGAAIGAVTGTIVArGKVQA 127
                 34567999***********************997355555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.01
        MccV  24 akgigaaagtfvaGaiGaivggivagavy 52 
                 a ++   +gt +aG+ G +vg+++++ + 
  EHT98814.1 258 AIAAVVLGGTSLAGGKGRVVGTLIGALIL 286
                 334556799999**********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2448.14
//
Query:       EHT98815.1  [L=502]
Description: ATP-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-54  182.2   0.0    2.2e-28   99.5   0.0    2.2  2  ABC_tran        ABC transporter
    4.6e-06   26.7   0.2        0.1   12.4   0.0    2.6  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    5.8e-05   22.9   1.9     0.0058   16.4   0.3    2.8  3  AAA_30          AAA domain
    0.00066   19.2   0.0      0.022   14.2   0.0    2.8  1  SMC_N           RecF/RecN/SMC N terminal domain
    0.00096   19.1   0.3      0.031   14.2   0.1    2.6  2  RsgA_GTPase     RsgA GTPase
     0.0049   16.8   0.0      0.012   15.5   0.0    1.6  1  Ploopntkinase3  P-loop Nucleotide Kinase3
     0.0089   15.8   0.7       0.02   14.6   0.1    1.8  2  AAA_29          P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.1        3.5    8.0   0.0    2.5  2  AAA_16          AAA ATPase domain
      0.015   15.3   0.0      0.022   14.7   0.0    1.1  1  CTF_NFI         CTF/NF-I family transcription modulation regi
      0.015   15.3   1.4          2    8.4   0.1    2.5  2  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.024   13.4   3.6       0.21   10.3   0.0    2.7  3  ABC_ATPase      Predicted ATPase of the ABC class
      0.037   14.3   2.2       0.76   10.0   0.1    3.3  4  AAA_22          AAA domain
      0.048   14.2   0.1      0.096   13.2   0.1    1.4  1  AAA_23          AAA domain
      0.091   12.5   0.0       0.12   12.1   0.0    1.2  1  AAA_15          AAA ATPase domain
      0.093   12.5   0.7       0.17   11.7   0.1    1.7  1  MukB            MukB N-terminal
       0.12   12.5   0.2       0.36   10.9   0.0    1.9  2  MMR_HSR1        50S ribosome-binding GTPase
       0.24   10.4   2.8         21    4.0   0.1    3.2  3  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
       0.25   11.2   1.3         56    3.6   0.1    3.6  4  MobB            Molybdopterin guanine dinucleotide synthesis 


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   2.2e-31   2.2e-28       1     136 [.      20     169 ..      20     170 .. 0.97
   2 !   80.8   0.0   1.3e-25   1.3e-22       2     136 ..     269     423 ..     268     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 2.2e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.................es 81 
                 l+  sl++ +g+++a+vGenGaGKSt++k+l+g ++ ++G++++ g++++   ++ s ++ ig+++qe +l p+ltv+en                  +
  EHT98815.1  20 LNGASLSVWAGRVMALVGENGAGKSTMMKVLTGIYTRDAGSLQWLGEETTFsGPKASQEAGIGIIHQELNLIPQLTVAENiflgrefingfgrinwkRM 118
                 6789*****************************************9999987899999***********************************999888 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +e++++l++l+l    ++ v      LS G +q+v++a++l  ++k++++DEpt
  EHT98815.1 119 YAEADALLKRLNLRFSSHKLV----GDLSIGDQQMVEIAKVLSFESKVIIMDEPT 169
                 899************999999....*****************************9 PP

  == domain 2  score: 80.8 bits;  conditional E-value: 1.3e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 ++vs++l++ge++++ G  GaG + L+k+l+g l  t G+++l g+++    +   l + i +++++   + l  +++v+en                 
  EHT98815.1 269 DDVSFTLRKGEILGVSGLMGAGRTELMKILYGALPRTGGQVWLSGREVVIrSPQDGLANGIVYISEDrkrDGLVLGMSVKENmsltalryfshpagrlr 367
                 89******************************************999988789999***********99999*****************9997777664 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +  ee  ++ + ++l ++k+  +++    LSgG +q+va+ar l+++p++l+lDEpt
  EHT98815.1 368 H-AEEQLAVKDFIRLFNVKTPSMEQPIGLLSGGNQQKVAIARGLMTRPNVLILDEPT 423
                 2.3333333333333334555555556*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0    0.0001       0.1       1      24 [.      32      55 ..      32      81 .. 0.79
   2 ?   -1.9   0.0       2.4   2.4e+03     235     297 ..     140     199 ..      88     200 .. 0.72
   3 !   11.4   0.0   0.00021      0.21     232     296 ..     391     452 ..     360     459 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                +++l+G Ng+GKS+ ++ l ++  
  EHT98815.1 32 VMALVGENGAGKSTMMKVLTGIYT 55
                579****************98854 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  +lS G +++  ++  l       ++++ DEp   L    + +l+++++el++ g  ++  +H
  EHT98815.1 140 GDLSIGDQQMVEIAKVLSFES---KVIIMDEPTDALTDTETLSLFRVINELKAQGCGIVYISH 199
                 456777777766666666666...788888888777655555566666666666666666665 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                  p+  lS G ++  a++  l  ++    +l++DEp  g +  + +++++l+++ +++g  +il++
  EHT98815.1 391 QPIGLLSGGNQQKVAIARGLMTRP---NVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452
                 688888999999977777777777...89***********************9999898887765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   5.8e-06    0.0058      19      48 ..      31      60 ..      23      81 .. 0.85
   2 ?    4.7   0.0     0.021        21      19      51 ..     279     311 ..     271     334 .. 0.81
   3 ?   -2.2   0.0       2.8   2.8e+03      87     121 ..     412     450 ..     368     452 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.8e-06
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggr 48
                rv++l+G  G+GK+t++k+l+ +++++ g+
  EHT98815.1 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGS 60
                699*********************998555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.021
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrvig 51 
                  +  + G  G+G t ++k l  a+ + gg+v +
  EHT98815.1 279 EILGVSGLMGAGRTELMKILYGALPRTGGQVWL 311
                 477899*******************99976654 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.8
      AAA_30  87 epgtllivDEagmv....dtkqlaallkaaekagakvil 121
                 ++ ++li DE        + k++ +l+++ +++g ++il
  EHT98815.1 412 TRPNVLILDEPTRGvdvgAKKEIYQLINQFKAEGLSIIL 450
                 333566666644322333445555555555555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.2e-05     0.022      22     200 ..      28     202 ..      13     473 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
                 TTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  22 fsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevt 119
                 ++ ++ a+vG+NG+GKs ++  +  +   ++  +l+    +      +  +++++a + i+ ++ +   + + +e++ + r+ +++     +in k++ 
  EHT98815.1  28 WAGRVMALVGENGAGKSTMMKVLTGIYTRDAG-SLQWLGEETT---FSGPKASQEAGIGIIHQELNLIpQLTVAENIFLGREFINGFG---RINWKRM- 118
                 5567899*************999655553333.4444433333...345778888888888777766633344455666666555544...3444333. PP

                 HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislree 200
                 ++e   ll++ ++  +       LS G++++v +a +++ ++     + ++De   aL ++++  + ++++e + + + ++ is+r +
  EHT98815.1 119 YAEADALLKRLNLRFSshklvgDLSIGDQQMVEIAKVLSFES----KVIIMDEPTDALTDTETLSLFRVINELKAQgCGIVYISHRMK 202
                 344444555444444444444446667777777666666543....356666666666666666666666666655344555666533 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.1e-05     0.031      96     122 ..      27      53 ..      17      71 .. 0.84
   2 ?    1.9   0.0      0.19   1.9e+02      80     122 ..     258     301 ..     234     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
                  HCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpe 122
                  ++++++++lvG+ G+GKSt++++l++ 
   EHT98815.1  27 VWAGRVMALVGENGAGKSTMMKVLTGI 53 
                  67899******************9875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  l+v++ ++ g+++++  l++ ++  + G  G+G++ L++ l + 
   EHT98815.1 258 LKVQNLSGPGVDDVSFTLRKgEILGVSGLMGAGRTELMKILYGA 301
                  4556667789999****99989****************999876 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05     0.012       4      30 ..      31      57 ..      29      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
  Ploopntkinase3  4 rliylvGqPGaGkstlmaeltkgfdrs 30
                    r++ lvG+ GaGkst+m  lt  + r 
      EHT98815.1 31 RVMALVGENGAGKSTMMKVLTGIYTRD 57
                    8899******************99986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.1e-05      0.02      22      39 ..      29      47 ..      19      55 .. 0.80
   2 ?   -3.5   0.0         9   8.9e+03      17      37 ..     273     293 ..     268     295 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
      AAA_29 22 kg.atlltGpsGsGKSTll 39
                +g ++ l+G++G+GKST++
  EHT98815.1 29 AGrVMALVGENGAGKSTMM 47
                455899***********98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9
      AAA_29  17 ieidlkg.atlltGpsGsGKST 37 
                 ++++  g +  ++G  G+G + 
  EHT98815.1 273 FTLRK-GeILGVSGLMGAGRTE 293
                 55553.3367788999999775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0036       3.5      25      51 ..      31      57 ..      17      95 .. 0.81
   2 ?    5.9   0.0     0.015        15      25      63 ..     279     318 ..     270     421 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0036
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                +++ l+Ge G GKs++++ l   +++d
  EHT98815.1 31 RVMALVGENGAGKSTMMKVLTGIYTRD 57
                7899************99888766666 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.015
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif.lrgkcdql 63 
                 e++ +sG  G G + l++ l+ al ++gg + l+g+ +  
  EHT98815.1 279 EILGVSGLMGAGRTELMKILYGALPRTGGQVwLSGREVVI 318
                 7899***********************9777799998877 PP

>> CTF_NFI  CTF/NF-I family transcription modulation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.2e-05     0.022     169     217 ..     355     405 ..     346     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
     CTF_NFI 169 sssYFshpaiRYpphlaqdpLkelvslvc.adpssqqa.sqlngsgqgkvp 217
                 +  YFshpa R  +   q ++k+++ l   + ps +q+ + l g++q kv 
  EHT98815.1 355 ALRYFSHPAGRLRHAEEQLAVKDFIRLFNvKTPSMEQPiGLLSGGNQQKVA 405
                 557***********99**********96514566555427799******96 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1     0.002         2      16      39 ..      27      50 ..      16      60 .. 0.80
   2 ?    5.2   0.1     0.019        19      19      43 ..     278     302 ..     267     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.002
                HCHTEEEEEEESTTSSHHHHHHHH CS
        TsaE 16 kalgdvilLeGdLGaGKTtlvrgl 39
                  +g+v++L G+ GaGK+t+++ l
  EHT98815.1 27 VWAGRVMALVGENGAGKSTMMKVL 50
                333889**************9987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 g+++  +G +GaG T l++ l  al
  EHT98815.1 278 GEILGVSGLMGAGRTELMKILYGAL 302
                 6778899************987665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.028        28     242     270 ..      27      55 ..       8      60 .. 0.79
   2 ?   -3.0   0.1       2.4   2.4e+03     329     352 ..     148     171 ..     146     173 .. 0.85
   3 ?   10.3   0.0   0.00021      0.21     377     417 ..     435     474 ..     411     499 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.028
                 E-SS.EEEEEE-TTSSHHHHHHHHHHCCSE CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAlekGvyn 270
                 +  G v+++vG +  GKsT+++ l +G+y 
  EHT98815.1  27 VWAGrVMALVGENGAGKSTMMKVL-TGIYT 55 
                 5567799**************988.57776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
                 HHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 329 qAanimealeagakllLiDEDtsA 352
                 q ++i++ l  ++k++++DE t A
  EHT98815.1 148 QMVEIAKVLSFESKVIIMDEPTDA 171
                 557899999***********8766 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00021
                 HHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEE CS
  ABC_ATPase 377 vdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpk 417
                  ++++++ k  g+s+ilv++ + + l ++d++++m+e + +
  EHT98815.1 435 YQLINQF-KAEGLSIILVSSEMPEVLGMSDRIVVMHEGRLS 474
                 5566677.888************************986655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00076      0.76       6      26 ..      31      51 ..      29      80 .. 0.87
   2 ?   -2.2   0.0       4.6   4.5e+03      92     116 ..     160     185 ..     111     199 .. 0.62
   3 ?   -0.2   0.1       1.1   1.1e+03       6      27 ..     279     300 ..     275     322 .. 0.82
   4 ?    1.0   0.0      0.47   4.7e+02      88     128 ..     409     451 ..     374     455 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00076
      AAA_22  6 gilvvtGesGtGKTtllrrll 26
                ++++++Ge G+GK+t ++ l+
  EHT98815.1 31 RVMALVGENGAGKSTMMKVLT 51
                6899*************9876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.6
      AAA_22  92 ielliiDEaqh.lrseealeeLrsll 116
                  +++i DE    l+  e l+ +r + 
  EHT98815.1 160 SKVIIMDEPTDaLTDTETLSLFRVIN 185
                 56788887544363244444444444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
      AAA_22   6 gilvvtGesGtGKTtllrrlle 27 
                  il v G  G+G+T l++ l  
  EHT98815.1 279 EILGVSGLMGAGRTELMKILYG 300
                 57779999********997765 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.47
      AAA_22  88 arav.ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLv 128
                   ++ + +li+DE  + ++   ++ + +L + ++    g+++iLv
  EHT98815.1 409 GLMTrPNVLILDEPTRgVDvgAKKEIYQLINQFK--AEGLSIILV 451
                 3333667******999885543555555556666..899999987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.7e-05     0.096      22      44 ..      33      55 ..      29      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.7e-05
      AAA_23 22 tlItGpNGaGKTTildAiklaLy 44
                 +++G+NGaGK+T +  ++ + +
  EHT98815.1 33 MALVGENGAGKSTMMKVLTGIYT 55
                5789***********99887666 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.12      25      44 ..      32      51 ..      23     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_15 25 ltvliGkNnsGKSsileald 44
                ++ l+G+N++GKS+ +++l 
  EHT98815.1 32 VMALVGENGAGKSTMMKVLT 51
                789**************995 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00017      0.17      28      60 ..      32      64 ..      28      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                HHHHHS--SHHHHHHHHHHHHHHS--TTT---- CS
        MukB 28 vttlsGgnGaGksttmaafvtaliPdlsllhfr 60
                v +l G nGaGkst+m  +  +   d   l++ 
  EHT98815.1 32 VMALVGENGAGKSTMMKVLTGIYTRDAGSLQWL 64
                889*************99998888888888763 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00036      0.36       2      21 ..      33      52 ..      32      71 .. 0.86
   2 ?   -3.1   0.0       8.2   8.2e+03       3      22 ..     282     301 ..     281     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                +a+vG   +GKSt+++ ltg
  EHT98815.1 33 MALVGENGAGKSTMMKVLTG 52
                699***************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.2
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 ++ G   +G + L++ l g+
  EHT98815.1 282 GVSGLMGAGRTELMKILYGA 301
                 6789999******9999886 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.021        21      30      52 ..      31      53 ..      14      62 .. 0.81
   2 ?    1.5   0.1      0.12   1.2e+02      29      60 ..     278     309 ..     269     313 .. 0.89
   3 ?    3.0   0.0     0.042        42      86     128 ..     410     452 ..     397     470 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.021
                EEEEEEE-TTSSHHHHHHHHHHH CS
        MeaB 30 qvvGltGvPGaGkstlvealgle 52
                +v+ l G  GaGkst+++ l+  
  EHT98815.1 31 RVMALVGENGAGKSTMMKVLTGI 53
                478899**********9998754 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
                 SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB  29 aqvvGltGvPGaGkstlvealglelrrrGkrv 60 
                  + +G+ G+ GaG+  l++ l   l r G +v
  EHT98815.1 278 GEILGVSGLMGAGRTELMKILYGALPRTGGQV 309
                 5689*****************99999999887 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.042
                 CCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT-SEEEEE CS
        MeaB  86 lavdegvfiRslpsrGalGGlaaktrevvllleaaGfDvvlie 128
                 l + ++v i   p+rG   G+ ++  ++++ + a G  ++l+ 
  EHT98815.1 410 LMTRPNVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452
                 66899***********************************985 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.056        56       1      23 [.      32      54 ..      32      62 .. 0.85
   2 ?    1.3   0.0      0.29   2.9e+02      14      39 ..     178     203 ..     175     210 .. 0.85
   3 ?    2.3   0.1      0.14   1.4e+02       1      30 [.     280     309 ..     280     311 .. 0.88
   4 ?   -2.3   0.0       3.9   3.9e+03      17      33 ..     435     451 ..     429     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.056
        MobB  1 vlgivgksgsGKTtLleklipel 23
                v+++vg +g+GK t+++ l  + 
  EHT98815.1 32 VMALVGENGAGKSTMMKVLTGIY 54
                6899************9987665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
        MobB  14 tLleklipelkarglrvgtiKhahhg 39 
                   l ++i+elka+g+ + +i h  ++
  EHT98815.1 178 LSLFRVINELKAQGCGIVYISHRMKE 203
                 55789***************998765 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.14
        MobB   1 vlgivgksgsGKTtLleklipelkarglrv 30 
                 +lg+ g  g+G+T L++ l  +l + g +v
  EHT98815.1 280 ILGVSGLMGAGRTELMKILYGALPRTGGQV 309
                 68999************9999998888665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.9
        MobB  17 eklipelkarglrvgti 33 
                  +li+++ka+gl++ ++
  EHT98815.1 435 YQLINQFKAEGLSIILV 451
                 68999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3630.29
//
Query:       EHT98816.1  [L=139]
Description: putative cytoplasmic sugar-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-49  167.8   0.1    1.8e-49  167.6   0.1    1.0  1  RbsD_FucU      RbsD / FucU transport protein family
    0.00021   20.8   0.0    0.00037   20.0   0.0    1.3  1  DUF4527        Protein of unknown function (DUF4527)
  ------ inclusion threshold ------
      0.046   13.7   0.4      0.096   12.6   0.2    1.6  2  PhnG           Phosphonate metabolism protein PhnG
      0.051   13.3   0.1      0.073   12.8   0.1    1.3  1  HydF_tetramer  Hydrogen maturase F tetramerization domain
      0.091   12.8   0.3       0.13   12.3   0.3    1.4  1  FAD-SLDH       Membrane bound FAD containing D-sorbitol dehyd


Domain annotation for each model (and alignments):
>> RbsD_FucU  RbsD / FucU transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.1     5e-53   1.8e-49       1     134 []       1     138 [.       1     138 [. 0.95

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 5e-53
                 TTSSTTS-HHHHHHHHH--TT-EEEEE-TTS-HHCCSCEEE.-CBTTBS-HHHHHHHHHCTS-EEEEEEETCHHHHTHHHHHHHHHHCCCCCC....-- CS
   RbsD_FucU   1 mkksgilnpeLlkvlaelGHgDeiviaDaglPipsgveridlalragvpsfldvleavlselpvekvivaeevkeenpevleelkellakaee....ek 95 
                 mkk ++ln+eL++v+a+lGH+D+++iaDaglPip++++ridlal +g+p+f++v+eav++e++ve++++aee+k++np++++el ++l++ ++    + 
  EHT98816.1   1 MKKGRLLNAELSYVIARLGHTDTLTIADAGLPIPAETQRIDLALIPGTPGFMQVVEAVTHEMQVESAFIAEEIKQHNPQLHSELIAVLDALQQhqgnRI 99 
                 9***********************************************************************************999997766543444 PP

                 -EEEE-HHHHHHHGGGCSEEEE-S--STT--EEEEE--- CS
   RbsD_FucU  96 eieeveheefkerakkakavvrTGEttpYaniiLkkGVv 134
                 +i++++he+fk++++++ av+r+GE++pYan+iL +GV+
  EHT98816.1 100 TIRYISHEQFKQQTQRSQAVIRSGECSPYANVILSAGVT 138
                 4************************************96 PP

>> DUF4527  Protein of unknown function (DUF4527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-07   0.00037     159     231 ..       6      80 ..       2      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1e-07
     DUF4527 159 llnpemdsvlqrplsseswpvpeae..wpaqtarldslklplpsglmadpgtcqaavtvepglpaqslqeegges 231
                 lln e+  v++r  ++++  +++a    pa+t r+d   +p  +g m+  ++    ++ve++++a+++++++ + 
  EHT98816.1   6 LLNAELSYVIARLGHTDTLTIADAGlpIPAETQRIDLALIPGTPGFMQVVEAVTHEMQVESAFIAEEIKQHNPQL 80 
                 899***99****************977889**************************************9987655 PP

>> PhnG  Phosphonate metabolism protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.63   2.3e+03      86     111 ..      20      45 ..      12      66 .. 0.76
   2 ?   12.6   0.2   2.7e-05     0.096      84     124 ..      79     117 ..      52     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHCTSHHHHHHHHHHTH CS
        PhnG  86 kAelaAllDAllqtpereeeleaeli 111
                 +  ++ ++DA l  p++++++  +li
  EHT98816.1  20 HTDTLTIADAGLPIPAETQRIDLALI 45 
                 55667788888888887777766665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.7e-05
                 HHHHHHHHHHHHHCTSHHHHHHHHHHTHHHHHHHHHHHHHH CS
        PhnG  84 krkAelaAllDAllqtpereeeleaelieplearlaeeraa 124
                 + ++el+A+lDAl q++ ++  ++ + i++ + +++++r++
  EHT98816.1  79 QLHSELIAVLDALQQHQGNR--ITIRYISHEQFKQQTQRSQ 117
                 5689*********9999855..5556777766666666654 PP

>> HydF_tetramer  Hydrogen maturase F tetramerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-05     0.073       3      78 ..      51     126 ..      49     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
                    HHHHHTTSTT--TT-EEEEE-----------TTTTHHHHHHHHHH----EEEEE--SS--HHHTT-SEEEE-TT-- CS
  HydF_tetramer   3 fvegikaleelkdgdkvliaEaCtHhrqkdDigrvkiPkllkkktgkelefevaagrefpeeleeyklvihCggCm 78 
                    f++ ++a+++  + +  +iaE  + h+ +       +   l++++g+ +++++ ++++f++++++ + vi+ g C 
     EHT98816.1  51 FMQVVEAVTHEMQVESAFIAEEIKQHNPQLHSELIAVLDALQQHQGNRITIRYISHEQFKQQTQRSQAVIRSGECS 126
                    5666777777677777788877765555444555667789**********************************95 PP

>> FAD-SLDH  Membrane bound FAD containing D-sorbitol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   3.6e-05      0.13      28      94 ..      39     102 ..      17     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
    FAD-SLDH  28 aaaaassaelaqFlqvSqlLtgrkkLdpalgarlyaalvaedaefkaqlaaLaallekqkakdveal 94 
                 +   a  +    F+qv +++t + ++++a    + + + ++++++ ++l a +++l++++++ +   
  EHT98816.1  39 RIDLALIPGTPGFMQVVEAVTHEMQVESA---FIAEEIKQHNPQLHSELIAVLDALQQHQGNRITIR 102
                 555666677889**********9977665...57899********************9999876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1071.02
//
Query:       EHT98817.1  [L=133]
Description: hypothetical protein CKS_1225 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-33  115.3   1.6    1.9e-33  114.6   1.6    1.4  1  BOF              Bacterial OB fold (BOF) protein
     0.0068   16.4   0.2       0.34   10.9   0.1    2.1  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.022   14.8   0.1        5.7    7.0   0.0    2.2  2  RcpC             Flp pilus assembly protein RcpC/CpaB
      0.051   13.6   0.0      0.084   13.0   0.0    1.3  1  bPH_4            Bacterial PH domain


Domain annotation for each model (and alignments):
>> BOF  Bacterial OB fold (BOF) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   1.6   4.3e-37   1.9e-33       6     103 .]      34     131 ..      14     131 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 4.3e-37
                 -------------------HHHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGSTT----TTSEEEEEEEEEEETTEEEEEEEEEEE CS
         BOF   6 satqaiegGfrganakvttvkaAlsaaDdasvslrGnivkriddDeyvFrDasGeikveiddrvfnglevqpkdkvkiqGkvDkelekaeidvkkiek 103
                 +a+++++gGf+  +++v+tvk+A  ++Dd+++++rG++ k+ +++ y+FrD+sG++ veid++++ng++v pkd+v+++G++Dk++++ e+dvk+++k
  EHT98817.1  34 PAAHTQQGGFHADHTSVVTVKQAEAMKDDSWITVRGQLEKQTGNEDYLFRDESGTMTVEIDHKRWNGVTVSPKDRVELTGELDKDFNSIELDVKQVKK 131
                 47899*****9999**********************************************************************************97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0058        26      41      64 ..      54      77 ..      49      98 .. 0.72
   2 !   10.9   0.1   7.6e-05      0.34      23      75 ..      82     131 ..      79     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0058
                     HHHTTS-TTSEEEEEEEEEECTTS CS
  tRNA_anti-codon 41 klaenlkeGdvvrvtGrvkrrpgg 64
                     k+ae  k ++++ v+G++++  g+
       EHT98817.1 54 KQAEAMKDDSWITVRGQLEKQTGN 77
                     789999999********9998666 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 7.6e-05
                      EEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEE CS
  tRNA_anti-codon  23 lrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveeiel 75 
                       rD++g+++v ++   ++    ++ + d v+ tG++ ++ +  +el v++++ 
       EHT98817.1  82 FRDESGTMTVEIDH--KRWNGVTVSPKDRVELTGELDKDFNS-IELDVKQVKK 131
                      699**********9..999999999****************9.******9986 PP

>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0013       5.7      52      99 ..       8      58 ..       2      63 .. 0.62
   2 ?    5.9   0.0    0.0028        13      13      37 ..      88     112 ..      81     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
        RcpC 52 vaelllqnvrVLavgq.....eeakkreeedeekkkeaetastvtLevtpeqa 99
                +a +ll+ + VLa +q        ++ + +  +++    +++t ++ v++++a
  EHT98817.1  8 IAVTLLASAPVLAAQQggfvdP--NAPAPAAHTQQGGFHADHTSVVTVKQAEA 58
                6789************999642..33333333333333333455556665555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0028
        RcpC  13 AvaievdevtgvaglirpGdrVDVl 37 
                  +++e+d ++ ++  ++p drV + 
  EHT98817.1  88 TMTVEIDHKRWNGVTVSPKDRVELT 112
                 589*******************875 PP

>> bPH_4  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.084      37      72 ..      82     117 ..      75     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
       bPH_4  37 sspalsldrleIkygkydtilisPkkkeeFieeLkk 72 
                 ++  + +  +eI ++ ++++++sPk++ e+  eL k
  EHT98817.1  82 FRDESGTMTVEIDHKRWNGVTVSPKDRVELTGELDK 117
                 5556677889*****************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1027.59
//
Query:       EHT98818.1  [L=223]
Description: DNA-binding response regulator in two-component regulatory system with QseC [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-24   83.8   0.0    1.3e-23   83.3   0.0    1.2  1  Response_reg  Response regulator receiver domain
      2e-23   82.3   0.2    4.7e-23   81.1   0.2    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0034   17.7   0.0     0.0054   17.1   0.0    1.4  1  FleQ          Flagellar regulatory protein FleQ
  ------ inclusion threshold ------
      0.086   13.1   0.0       0.15   12.3   0.0    1.4  1  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   2.9e-27   1.3e-23       1     111 [.       3     112 ..       3     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 2.9e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+++Dd+l+ ++++  l + g+ +v+ + +g++ ++ l++   d ++lD+++p+ dGl++l++ r++ +++pv+ilta+++ +++ve+l++gadd+
    EHT98818.1   3 ILLIEDDRLIGDGIKAGLSKLGF-SVDWFVSGEAGFQALNAAPWDAVVLDLSLPERDGLDILRQWRQQGYDVPVLILTARDALDQRVEGLQMGADDY 98 
                   89*********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kpf+ +e+ ++l
    EHT98818.1  99 LCKPFALTEVAARL 112
                   ******99998876 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.2     1e-26   4.7e-23       2      77 .]     146     216 ..     145     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1e-26
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                   +vel+++e++lLel+++npgrv++r +L e+++  d +v++++v+vhi++LR+kL++     r+I+t++gvGY l
   EHT98818.1 146 ASVELKSREMALLELFMRNPGRVLTRSQLEEKLYTWDTEVSSNAVEVHIHHLRRKLGQ-----RFIRTIHGVGYTL 216
                  6799******************************************************.....9**********86 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0054       1      81 [.       2      84 ..       2     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseel.saaleesssealavilgsvs.sleealealaekdphlPvlllgesdea 81
                +iL+i+dd    + +++ L+ lg +v ++ s e+  +al  ++++a+++ l+  +    + l++  ++   +Pvl+l+ +d+ 
  EHT98818.1  2 RILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAgFQALNAAPWDAVVLDLSLPErDGLDILRQWRQQGYDVPVLILTARDAL 84
                69*****************************99999**************99999778899999999999*******999887 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.5e-05      0.15      11      73 ..      18      82 ..      14      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.5e-05
  OKR_DC_1_N 11 ealekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFllaetr 73
                + l+k gf+v +  s + + +++++ +  +avvl+++    +  ++l++ r+ ++d+Pv +l+ ++
  EHT98818.1 18 AGLSKLGFSVDWFVSGEAGFQALNA-APWDAVVLDLSlpeRDGLDILRQWRQQGYDVPVLILTARD 82
                6677778888888888877777766.8899*******9999999******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1792.93
//
Query:       EHT98819.1  [L=622]
Description: Kup system potassium uptake protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-208  693.5  24.5     2e-208  693.3  24.5    1.0  1  K_trans   K+ potassium transporter


Domain annotation for each model (and alignments):
>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  693.3  24.5  1.1e-212    2e-208       2     534 .]      14     544 ..      13     544 .. 0.99

  Alignments for each domain:
  == domain 1  score: 693.3 bits;  conditional E-value: 1.1e-212
     K_trans   2 lqalgvvygdigtSPLYvlksif.eakatepseedilGvlSlifwtLilivtvkYviivlradnkgeGGilaLlaliaslkkskkkakwlllilaliGa 99 
                 l+a+gvvygdigtSPLY+l++++  + +  +++++++G lSlifw L+l+v++kY+  v+radn geGGil+L++l+   +++  + + +l+i++liG 
  EHT98819.1  14 LAAIGVVYGDIGTSPLYTLRECLsGQFGFGVERDAVFGFLSLIFWLLVLVVSLKYISYVMRADNAGEGGILTLMSLAG--RHTGGRITATLVIMGLIGG 110
                 789********************99999*************************************************9..555666666669******* PP

     K_trans 100 alllgDgvltPaisvlsAveGlevaspsleklvvpislvilvlLFliQkfGtekigklfgpimliWflllavlGilnivkkpsvlkAlnPlyaiefllr 198
                 ++++g+ v+tPa+svlsA+eGle+a+p+l++++vp+++++l+lLF+iQk+Gt  +gklf+p+ml+Wf++la+lG+ +i+++p+vl+AlnP++a++f+++
  EHT98819.1 111 SFFYGEVVITPAVSVLSAIEGLEIAAPNLDSYIVPLAITVLTLLFIIQKHGTGIVGKLFAPVMLLWFIVLAILGARSIANNPEVLQALNPYWALHFFVE 209
                 *************************************************************************************************** PP

     K_trans 199 nklagflvLgavlLavTGaEaLyaDlGhfgkkpirlawlllvlpaLllnYlGQgalllknpeavsnpfyelipealllpllvlatlatiiASQalIsgv 297
                  k  +f++Lgav+La+TG+EaLyaD+Ghfgk pirlaw+++vlp+L+lnY+GQgalllk+pea++npf+ l+p+++l+p+l+latlat+iASQa+Isgv
  EHT98819.1 210 YKSVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFVVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALVPMLILATLATVIASQAVISGV 308
                 *************************************************************************************************** PP

     K_trans 298 FslvsqaiklgllPrlkvvhtsekeegqiYiplvNwllliavilvvlvFksssnlaaAYGlavtltmlittlllllvlvlvwklklilvllvlllflli 396
                 Fsl++qa++lg+lP +++vhtseke+gqiYip++Nwll+++v++v+++F++ssnlaaAYG+avt+tm++t++l+++v+++ w+++ +lv l+l+++l+i
  EHT98819.1 309 FSLTRQAVRLGYLPPMRIVHTSEKESGQIYIPIINWLLYFSVVIVIIGFEHSSNLAAAYGIAVTGTMVLTSVLCATVAIMNWHWNRYLVGLILIAMLCI 407
                 *************************************************************************************************** PP

     K_trans 397 dllflsanlkKipeGgwvplllavvlllimltWkygrkkllekeaeeevpleellkllekkkvkrvpgtavflssaketvpavllhilkklkvlhervv 495
                 d++++sanl Ki++Ggw+pl+la++++++m+tWk  r +ll++++e+ ++le + ++lek+ + rvpgtav++s+a + +p ++lh+lk++kvlhervv
  EHT98819.1 408 DVSLFSANLIKIFSGGWLPLTLALMMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRALNVIPFAMLHNLKHNKVLHERVV 506
                 *************************************************************************************************** PP

     K_trans 496 llsvktlevpkvpkeerveveklkseglvrvvvryGfme 534
                 ll+++t++ p+v++ +rv++e+l+ + ++rvv++yG++e
  EHT98819.1 507 LLTLRTEDAPYVHNVRRVTIEQLS-PTFWRVVASYGWRE 544
                 ************************.***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3971.33
//
Query:       EHT98820.1  [L=498]
Description: AAA+ family ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-23   83.6   0.0    2.1e-23   82.9   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
    5.9e-23   80.5   0.1    1.5e-22   79.2   0.1    1.8  1  AAA_lid_8        AAA lid domain
    3.7e-19   68.5   3.6    3.7e-19   68.5   3.6    2.5  1  DUF3763          Protein of unknown function (DUF3763)
    6.4e-05   22.8   0.0    0.00015   21.6   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
    0.00027   20.7   0.1      0.014   15.1   0.0    2.9  2  Sigma54_activat  Sigma-54 interaction domain
    0.00036   20.0   0.0     0.0027   17.1   0.0    2.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0037   17.7   0.0     0.0099   16.3   0.0    1.8  1  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.014   15.8   2.7      0.055   13.8   0.0    2.6  2  AAA_16           AAA ATPase domain
      0.034   13.9   0.0      0.069   12.9   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.055   13.6   0.0       0.11   12.6   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
       0.11   11.4   0.0        3.9    6.3   0.0    2.1  2  AAA_PrkA         PrkA AAA domain
       0.31   11.1   4.9       0.17   12.0   1.6    2.4  2  DUF465           Protein of unknown function (DUF465)


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.4e-26   2.1e-23       1     138 []      41     171 ..      41     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.4e-26
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraesevlnsLlslleerrllle 97 
                 +v+L+GppG++Ks +a+rl+ a+  ++ +++++tr+ t+e+++g+++i+  + + + + l++     +ei++lDE+++a +++ln+Ll+ ++err++  
  EHT98820.1  41 SVFLLGPPGIAKSLIARRLKCAFqHARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTKGYLpDAEIVFLDEIWKAGPAILNTLLTAINERRFR-- 137
                 59*********************99***********************999999999999977669*******************************.. PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrsRf 138
                 +g+ ++k +         ++ ++n+l+ +  +  +al++R+
  EHT98820.1 138 NGDSEEKIPM------RLLVTASNELP-EADSGLEALYDRM 171
                 9999999998......89*********.88888*******7 PP

>> AAA_lid_8  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.1     1e-25   1.5e-22       2      66 ..     228     292 ..     227     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 1e-25
   AAA_lid_8   2 vlelileiknkleeeeeaiyvSDRRwkkivkllkasAylngrdevnlsDllllkhclWnepeqke 66 
                 v+eli++++++le+  ea y+SDRRwkk+++ll+asA+++gr+ + + Dl+llk+clW++ ++ +
  EHT98820.1 228 VFELIYQLRQHLEKLPEAPYISDRRWKKAIHLLQASAFYSGRNAIAPLDLILLKDCLWHDVASMK 292
                 99*********************************************************987765 PP

>> DUF3763  Protein of unknown function (DUF3763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   3.6   2.5e-22   3.7e-19       1      54 [.     444     497 ..     444     498 .] 0.98

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 2.5e-22
                 -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH- CS
     DUF3763   1 peewleqleeleqelrkqrslFhqhqphlFIekewlaaIEaSllqlseqleqlq 54 
                 p+e+ ++l+el+ +lr+qr+lF+q+q++lFI+++ la++E Sl++++eql+q++
  EHT98820.1 444 PQEISDALDELDGQLRQQRHLFSQQQRCLFISDDCLARVETSLQDVAEQLKQAR 497
                 799*************************************************98 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     1e-07   0.00015       2     111 ..      42     156 ..      41     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1e-07
       AAA_3   2 vllegvPGlaktllvkalakaldle.fkriqftpdllPsdilGt...evfeekekefefkkGpvf.anllladeinrappktqsalleameerqvtveg 95 
                 v+l g PG+ak l+++ l  a++        +t    P ++ G    + ++++ +  +++kG +  a++++ dei +a p +  +ll a++er+   ++
  EHT98820.1  42 VFLLGPPGIAKSLIARRLKCAFQHArAFEYLMTRFSTPEEVFGPlsiQALKDEGRYQRLTKGYLPdAEIVFLDEIWKAGPAILNTLLTAINERRFRNGD 140
                 678899**********998777643134456788889****99621144455557788999*985489******************************* PP

       AAA_3  96 ethklpepflvlatqn 111
                 +  k+p  +lv a ++
  EHT98820.1 141 SEEKIPMRLLVTASNE 156
                 ***********99865 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.4e-06     0.014      18     147 ..      35     160 ..      23     180 .. 0.61
   2 ?   -0.5   0.3      0.57   8.4e+02     106     137 ..     305     336 ..     293     346 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.4e-06
                      HCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHH.HHHE.BSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHH CS
  Sigma54_activat  18 vaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelles.eLFG.hekGaFtGAekekkGlfekadgGtlfLDeigelplel 109
                      +a +  sv+++G  G  K+l+ar +  a +++++    +   ++pee++   ++     +G +   ++  kG++  a+  ++fLDei +  +++
       EHT98820.1  35 AALSGESVFLLGPPGIAKSLIARRLKCAFQHARAFEYLMTRFSTPEEVFGPlSIQAlKDEGRY---QRLTKGYLPDAE--IVFLDEIWKAGPAI 123
                      555666777778888888888877776666554422233333555555432011110223333...334457777665..99************ PP

                      HHHHHHHHHHSEEESBTSSSEEE--EE.EEEEESS-HHH CS
  Sigma54_activat 110 QekLlrvlqegevervGsskeikvdvr.iiaatnedlee 147
                       + Ll++++e++++  G+s+e k+ +r +++a+ne +e+
       EHT98820.1 124 LNTLLTAINERRFRN-GDSEE-KIPMRlLVTASNELPEA 160
                      *************87.55443.34444045555554444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.57
                      -HHHHHHHHHHHHHSEEESBTSSSEEE--EEE CS
  Sigma54_activat 106 plelQekLlrvlqegevervGsskeikvdvri 137
                       +  Q+ +l  lq+ + +r+  +++++v   i
       EHT98820.1 305 HAWQQQTILLKLQQLKARRLALQQQQSVAAAI 336
                      44468999999*********999999887665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.8e-06    0.0027       8      49 ..      25      66 ..      20      78 .. 0.83
   2 ?   -0.1   0.0      0.34   5.1e+02     109     135 ..     110     136 ..      93     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
  Mg_chelatase  8 qeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllppl 49
                  +++a r   +aa  g +++l+GppG  K+++a+rl+  + + 
    EHT98820.1 25 RHHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKCAFQHA 66
                  5788899999*************************9766555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.34
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgev 135
                   ++fLDE+ +    +l++L + +++++ 
    EHT98820.1 110 IVFLDEIWKAGPAILNTLLTAINERRF 136
                   89**************99988887764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.6e-06    0.0099       1     128 [.      42     175 ..      42     179 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.6e-06
                 EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.vefleisgsellsk.........yvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvn 87 
                 v l GppG+ K+l+a+ +   ++ ++ +e  ++++               + e + + l k        +  i+f+DEi + +++            +n
  EHT98820.1  42 VFLLGPPGIAKSLIARRLKCAFQhARAFEYLMTRFSTPeevfgplsiQALKDEGRYQRLTKG----YlpDAEIVFLDEIWKAGPAI-----------LN 125
                 5799*************988875444444444444422233333333233333333333333....255459**********9999...........** PP

                 HHHHHHHHTTTS.........SSTEEEEEEESSGGGSTHHHH.S.TTSSEEE CS
         AAA  88 qLlteldgvkkk.........eskvivigatnrpdkldpall.r.gRfdrki 128
                 +Llt++++ + +             ++++a+n+  + d+ l  + +R+ +++
  EHT98820.1 126 TLLTAINERRFRngdseekipM--RLLVTASNELPEADSGLEaLyDRMLIRL 175
                 *******999888899887533..4888999996666665553347776665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.7e-05     0.055      12      51 ..      29      66 ..      22     109 .. 0.74
   2 ?    0.1   0.9      0.61   9.1e+02      63     143 ..     404     477 ..     378     496 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.7e-05
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd 51
                ++ +l ++ sg  e+v+l G++G+ Ks ++r+l+ a++ +
  EHT98820.1 29 IRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKCAFQHA 66
                45566667777..89****************998666555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.61
      AAA_16  63 lesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea...srllellkrllallsrderplvlvlDd 143
                          +aq+l+   + +q + + ++ +l+ +r +l++a + +++l+ +++     l  +l++   l s+++r  +++ Dd
  EHT98820.1 404 I-------GFAQTLDL-LVDAQHCLAIRDVSLQTARLTLPGASS-ADALPQEISdalDELDGQLRQQRHLFSQQQR-CLFISDD 477
                 4.......46666644.566666666667777777777777666.4444444445557777777777766676455.6666666 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.069      47     117 ..      39     116 ..      27     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
   IstB_IS21  47 kenivllGpsGvGKshla....ialgveavraglsvlfvrvedLveelkra..rrdgklaralkrll.kvdllilDdl 117
                  e++ llGp+G+ Ks +a    +a+ ++ + + l ++f + e+++  l+++  +++g+++r  k +l  ++++ lD++
  EHT98820.1  39 GESVFLLGPPGIAKSLIArrlkCAFQHARAFEYLMTRFSTPEEVFGPLSIQalKDEGRYQRLTKGYLpDAEIVFLDEI 116
                 58899**********9876655899999999999***********877654228999***999876625699999997 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.6e-05      0.11       5     105 ..      41     133 ..      39     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.6e-05
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS......EEEEETGGG-------------HHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG......ivllDEidKihpkessgadvSregVqr 97 
                 s+ llgp g+ k+++a+ l    +  + +++    ++ + + eev   +s    + +g  ++  +G      iv+lDEi K+ p            +++
  EHT98820.1  41 SVFLLGPPGIAKSLIARRLKCAFQ--HARAFE-YLMTRFSTPEEVFGPLSIQALKDEGRYQRLTKGylpdaeIVFLDEIWKAGP-----------AILN 125
                 56688999*****99999987776..355555.559999999****************************************99...........7777 PP

                 HHHHHHH- CS
       AAA_2  98 dLLqileg 105
                  LL  + +
  EHT98820.1 126 TLLTAINE 133
                 77766655 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.028        42      91     115 ..      42      66 ..      35      93 .. 0.84
   2 ?    6.3   0.0    0.0026       3.9     236     303 ..     110     172 ..      88     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.028
    AAA_PrkA  91 lyllGPvggGksslverlkklleaa 115
                 ++llGP g  ks ++ rlk ++++a
  EHT98820.1  42 VFLLGPPGIAKSLIARRLKCAFQHA 66 
                 69*****************999876 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0026
    AAA_PrkA 236 llefvemfkadikvlhplltatqegnyksteklslipfdgiilahsnesewkkfksnkknealldriv 303
                 ++ + e++ka   +l +llta  e+ ++  +    ip+  +++  sne      +++   eal+dr++
  EHT98820.1 110 IVFLDEIWKAGPAILNTLLTAINERRFRNGDSEEKIPMR-LLVTASNELP----EADSGLEALYDRML 172
                 455569***********************999999*997.5566688753....46667777777765 PP

>> DUF465  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.6   0.00011      0.17      11      39 ..     294     326 ..     292     329 .. 0.94
   2 ?   -2.4   0.1       3.5   5.2e+03      16      32 ..     480     496 ..     476     498 .] 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTT-.....S-HHHHHHHHHHHHHH CS
      DUF465  11 LdkeIhalearpv....tddleierLKkeKLeL 39 
                 Ld eI++l+++++    t  l +++LK ++L+L
  EHT98820.1 294 LDSEIDQLMTQHAwqqqTILLKLQQLKARRLAL 326
                 9*************9888889**********98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
                 HHHHTT-.S-HHHHHHH CS
      DUF465  16 halearpvtddleierL 32 
                 ++ e++ +++++++++ 
  EHT98820.1 480 ARVETSLQDVAEQLKQA 496
                 67788888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3389.39
//
Query:       EHT98821.1  [L=486]
Description: Von Willebrand Factor Type A (VWA) domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-08   34.0   0.0    3.3e-08   33.2   0.0    1.3  1  VWA_CoxE  VWA domain containing CoxE-like protein
      6e-07   30.1   0.0    1.5e-06   28.8   0.0    1.7  1  VWA_2     von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.049   13.8   0.0      0.087   13.0   0.0    1.5  1  DUF2201   VWA-like domain (DUF2201)


Domain annotation for each model (and alignments):
>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   5.5e-12   3.3e-08      46     178 ..     310     443 ..     291     464 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 5.5e-12
    VWA_CoxE  46 elvrrkprerkpr.elvllvDvSgSmaay.....saiflallhAllqqlprtevfaFdtrlvdlTralre.rDpaeaLarvsaavedlgGgTrigaala 137
                 ++v +++ e++pr + +++vD SgSm  +      a+ lall+ +l+ ++r  +++F   ++    +l   + +++a++ +s   +   GgT+++a l 
  EHT98821.1 310 RPVSHQQHEEQPRgPFIVCVDTSGSMGGFnercaKAFCLALLKIALADRRRCYIMLFAHDVIGY--ELTGdDGLEQAIRFLS---QRFRGGTDLAACLS 403
                 5555555444443379**********999333323577888888889999*********99854..4433056778888888...78************ PP

    VWA_CoxE 138 eflelvtrpaLsrravvvlvsDglergdreellaelarlvr 178
                 +++ +++ p+  ++a  v+vsD+  +   +e+++ ++  ++
  EHT98821.1 404 AVIARMEGPQ-WQDADAVIVSDFIAQRLPDEVVRSVKHRQQ 443
                 **********.8***********999999999988876555 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.5e-10   1.5e-06       2     106 ..     326     425 ..     325     426 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.5e-10
       VWA_2   2 vfvlDtSgSmrngdygptrleaakdaveallk.slp.gdrvglvtfsdgp.evlipltkdkakilnalrnleak.gggtnlaaaLqlarkalkkrrkge 96 
                 ++++DtSgSm++      +   ak++  allk +l+ + r+ ++ f++++   +++     + +++a+r l ++ +ggt+laa L+ + + ++  +  +
  EHT98821.1 326 IVCVDTSGSMGGF-----NERCAKAFCLALLKiALAdRRRCYIMLFAHDViGYELTG---DDGLEQAIRFLSQRfRGGTDLAACLSAVIARMEGPQ-WQ 415
                 79**********9.....799***********7666477********9972333433...4678999999999999*****************998.99 PP

       VWA_2  97 krvivlitDg 106
                  + +v+++D 
  EHT98821.1 416 DADAVIVSDF 425
                 9999999995 PP

>> DUF2201  VWA-like domain (DUF2201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.087       2      77 ..     326     407 ..     325     452 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
     DUF2201   2 vlavDtSgSi...kdkelarfaaeiadilrrleaevhvvavdeevqsvqrlep...aeklaelqltggGGTdlvpvlEavak 77 
                 +++vDtSgS+   +++ ++ f+  + +i  + + +  ++ + ++v   +   +   ++ ++ l+ + +GGTdl++ l av++
  EHT98821.1 326 IVCVDTSGSMggfNERCAKAFCLALLKIALADRRRCYIMLFAHDVIGYELTGDdglEQAIRFLSQRFRGGTDLAACLSAVIA 407
                 689******84445788999*************************99988877677777888888999*******9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3597.32
//
Query:       EHT98822.1  [L=712]
Description: formylglycine-generating sulfatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-26   93.6   4.8    2.2e-26   93.0   4.2    1.7  2  FGE-sulfatase    Sulfatase-modifying factor enzyme 1
      4e-13   49.4   0.0    9.1e-06   25.5   0.0    2.9  3  Methyltransf_31  Methyltransferase domain
    1.2e-12   48.4   0.0    9.2e-07   29.5   0.0    2.8  2  Methyltransf_25  Methyltransferase domain
    3.9e-12   46.7   0.0    8.5e-11   42.4   0.0    2.5  1  Methyltransf_11  Methyltransferase domain
    3.7e-11   43.6   0.0    9.2e-10   39.2   0.0    2.4  1  Methyltransf_12  Methyltransferase domain
    6.5e-11   42.3   0.0    1.4e-10   41.2   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    1.4e-09   38.6   0.1    3.7e-09   37.2   0.1    1.8  1  DinB_2           DinB superfamily
     0.0024   17.0   0.0      0.024   13.7   0.0    2.1  2  DREV             DREV methyltransferase
  ------ inclusion threshold ------
      0.018   14.6   0.0        1.2    8.7   0.0    2.2  2  NodS             Nodulation protein S (NodS)
       0.08   12.4   0.0       0.17   11.3   0.0    1.5  1  CheR             CheR methyltransferase, SAM binding domain
       0.11   12.0   0.0       0.26   10.8   0.0    1.5  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   4.2   1.4e-29   2.2e-26       3     259 ..     205     458 ..     203     459 .. 0.83
   2 ?   -3.7   0.0       4.3     7e+03     134     155 ..     639     659 ..     633     669 .. 0.71

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 1.4e-29
                    TTEEEE-SEEEEES-.TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHHH....H................SSE.TTEEEEETSCTTBCCT CS
  FGE-sulfatase   3 pemvlipgGsfemGs.eektandeeapahevtvraFaidkteVTnaqyaafveatgyete................aas.qwwaeveganvrhpeg 80 
                    +++v+ pgG +++G+ +++  +d+e+  ++ ++++F  +k+ V+na++  f+ea gy+++                +++  w+ ++ + +  + + 
     EHT98822.1 205 NSLVSQPGGLITLGKtDDTYGWDNEYGTQQTELKPFKASKMLVSNAEFYTFIEAGGYQNDrwwdeeglgwrkfaraTMPtFWVGNAAMPDQLKLRL 300
                    578999*********8899999************************************99**************9955515556677788888888 PP

                    TC-SSTT-TTSB--S--HHHHHHHHHHHCHHHTS-EE---HHHHHHHHHTT-SSSSCTTBSTTSCCGB...SSTTTTB--TTCGGS-SS.---TT- CS
  FGE-sulfatase  81 rksdikkradhPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArggkkgreypwgdelkpakniwqGslakfekeaaaadsqngrtspvgs 176
                       + + + d+P++ V+  +a a++rw+ ++tg+ + LP eaEw        + re+  gd+ +         + + + + + a +++    pv++
     EHT98822.1 301 MCEEVAMPWDWPAE-VNQLEAAAFCRWKAEETGKSVQLPCEAEWY-------QLREQVEGDQPD---------WDQAPGNINLAYWAS--SCPVDR 377
                    8899999*****86.7****************************8.......346788899977.........233444444444444..49**** PP

                    S-B-TTS-B-TTCSSEEEEEEE--...THCCH-.SSCS----SS-SSEEEEC--TTS.TTGGCTSTT-E.EEE-TT--BTTEEE--E CS
  FGE-sulfatase 177 fppnalGlyDmaGNvwEWtsdwyk...kyalap.aeelsqeaekgelrvvkGgswlkaelssllraafrasaetpdtaasdvGfRlv 259
                    fp+ +  ++D++GNvw+Wt++  +   +++ +p +++ s++ ++g++ ++kGgsw+++  ++ ++ ++   +     + ++ GfR v
     EHT98822.1 378 FPQGE--FFDIVGNVWQWTTTPTNgfeGFKVHPlYDDFSTPTFDGKHSLIKGGSWISTG-NEAIKSSRY-AF--RRHFFQHAGFRYV 458
                    ***76..6*************98877788888889999******************984.444444433.44..3567789999987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
                    SSSCTTBSTTSCCGB...SSTT CS
  FGE-sulfatase 134 greypwgdelkpakniwqGsla 155
                    ++ y+w +e++p++n w G ++
     EHT98822.1 639 SSPYTWLEEFTPKEN-WLGGVR 659
                    56899******9765.555333 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.72   1.2e+03      29      52 ..     487     511 ..     475     513 .. 0.79
   2 !   25.5   0.0   5.6e-09   9.1e-06       6      51 ..     512     554 ..     508     576 .. 0.85
   3 !   20.2   0.0   2.5e-07    0.0004      51     118 ..     582     648 ..     567     680 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.72
  Methyltransf_31  29 aevvGiDiseea.ielArenaqklg 52 
                       +++G+D+ +ea ++lA  +++++g
       EHT98822.1 487 PQYFGVDNYAEAlVKLALPHCKHHG 511
                      4899***766652799999999987 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 5.6e-09
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqkl 51 
                      + lD+GC+tG+ +fela+     a+v+G D+s++ i +A + +   
       EHT98822.1 512 EALDIGCATGRASFELARH---FAHVTGMDYSARFIDVALQLTTGE 554
                      679**************44...599**************9987655 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 2.5e-07
  Methyltransf_31  51 lgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpggilliedpr.llael 118
                       + ++++F qgd+ +++   ++ ++Dl+l+ ++++ l  p+ +l  ++  +++gg l++++p  +l+e+
       EHT98822.1 582 EQAKRIQFIQGDACNMK--PQPTRYDLVLASNLIDRLRQPARFLHDVTPMIRSGGLLVLSSPYtWLEEF 648
                      56789**********77..4679***************************************9534443 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   5.6e-10   9.2e-07       2      43 ..     514     553 ..     513     579 .. 0.88
   2 !   16.1   0.0   8.4e-06     0.014      44      97 .]     582     634 ..     564     634 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 5.6e-10
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee 43 
                      Ld+Gc tGr +++la+++  a+vtg+D+s+++++ a +    
       EHT98822.1 514 LDIGCATGRASFELARHF--AHVTGMDYSARFIDVALQLTTG 553
                      9****************9..***************9887754 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 8.4e-06
                      TTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  44 egl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      e++ +++f+qgda +++ +  ++Dlv++s+ +  l   + +++l+ +  +++ gG
       EHT98822.1 582 EQAkRIQFIQGDACNMKPQPTRYDLVLASNLIDRLR--QPARFLHDVTPMIRSGG 634
                      33349***********************98899887..55699*99999999998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   5.2e-14   8.5e-11       1      96 []     514     638 ..     514     638 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 5.2e-14
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.............................EEEETTEECCCTSS-TT-EEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.............................kvefvvadaeklpfednsfDlv 65 
                      Ld+Gc tGr + +la+++a+v+g+D+s++++++a + + +e++                             +++f+++da +++ +   +Dlv
       EHT98822.1 514 LDIGCATGRASFELARHFAHVTGMDYSARFIDVALQLTTGEDFryvvpeegelveyrqvrlkdfsvtseqakRIQFIQGDACNMKPQPTRYDLV 607
                      8*********************************888888888777777777777776666666677777777777********87888***** PP

                      EEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  66 vssevlhhvedpekalkeiaRvLkpgGllvi 96 
                      ++s+ ++ + +p+++l  +  + + gGllv+
       EHT98822.1 608 LASNLIDRLRQPARFLHDVTPMIRSGGLLVL 638
                      ****************************985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   5.7e-13   9.2e-10       1      99 []     514     636 ..     514     636 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 5.7e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.............................s 65 
                      L+iGc tG+ +++l+++  ++++tg+D+s+++i+ a + +  ++ + +   e e  +  +                                  
       EHT98822.1 514 LDIGCATGRASFELARH--FAHVTGMDYSARFIDVALQLTTGEDFRYVVPEEGELVEYRQ---VrlkdfsvtseqakriqfiqgdacnmkpqpT 602
                      8****************..**************555555555554444444433333333...245588999999******************* PP

  Methyltransf_12  66 sfDlvvasnvlhhlkdirevldnirklLkpgGrl 99 
                       +Dlv+asn++  l++++++l+ +  +++ gG l
       EHT98822.1 603 RYDLVLASNLIDRLRQPARFLHDVTPMIRSGGLL 636
                      ********************************86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   8.7e-14   1.4e-10       9     141 ..     496     661 ..     485     681 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 8.7e-14
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae...............................kakkaqkdqf 71 
                      + ++++ +lp  +  g+ LdiGc+tG+ + +l++++++vtg+D s + ++ a                                +  +a+  qf
       EHT98822.1 496 AEALVKLALPHCKHHGEALDIGCATGRASFELARHFAHVTGMDYSARFIDVALqlttgedfryvvpeegelveyrqvrlkdfsvTSEQAKRIQF 589
                      445566666889*********************************88777766999***99999999999999997777666663333333333 PP

  Methyltransf_23  72 deqeaaepqg....kfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagr 141
                        q +a++ +    ++dl+ +++++ +++ p++ l+ +  +++ gG+l+ls p   l+e    ++wl  v +  
       EHT98822.1 590 -IQGDACNMKpqptRYDLVLASNLIDRLRQPARFLHDVTPMIRSGGLLVLSSPYTWLEEFTPKENWLGGVRE-N 661
                      .3322222224445**************************************96555566666777766655.3 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.3e-12   3.7e-09       2     127 ..      35     170 ..      34     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.3e-12
      DinB_2   2 lerararllalledlte.eelnrqpspgkwsiawllaHlgn..veelllerlrgeeap.................rpgldpltp.....psaaealayl 75 
                 +++++a +++l+++l++   ++ +  p++++++ +++H++    ++l++ r  +++++                 +  l+   +     ps++ +++y+
  EHT98822.1  35 FNQTWALYEDLFTCLNDqRAWFTKAIPLRHPLIFYFGHTATfyINKLMAGRYIDSRIDdrieamlaigvdemswdD--LN---DshydwPSVEAVRDYR 128
                 789************88689999999***************76677777777755555555566666666555332..33...233356********** PP

      DinB_2  76 aevrarllallealtdadldrpltaphpglgkltlgdvllfvlqHeqhHleq 127
                  +v+a + +++e+++    + p+++        + ++v+l+ ++He+ Hle+
  EHT98822.1 129 GSVKALVTQFIETMPL---ELPVSWD-------SPAWVILMGIEHERIHLET 170
                 *************777...8999999.......*****************98 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   2.4e+02      97     130 ..     512     545 ..     495     557 .. 0.86
   2 !   13.7   0.0   1.5e-05     0.024     148     192 ..     600     642 ..     577     661 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
        DREV  97 klldlGaGdGeitkrvaptfeevyatelsetmrd 130
                 + ld+G   G  +  +a +f +v   + s + +d
  EHT98822.1 512 EALDIGCATGRASFELARHFAHVTGMDYSARFID 545
                 679********************99988887765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.5e-05
        DREV 148 tdvkldlilclnlldrcfdplklledirsalepngrvivalvlPv 192
                    ++dl+l+ nl+dr  +p ++l+d+  + ++ g  +++   P+
  EHT98822.1 600 QPTRYDLVLASNLIDRLRQPARFLHDVTPMIRSGGLLVLS--SPY 642
                 5679*************************99999877765..455 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00074       1.2      33      80 ..     498     546 ..     489     560 .. 0.81
   2 ?    3.5   0.0     0.028        46      87     147 ..     583     641 ..     570     645 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00074
        NodS  33 qilrlslaq.gsiadalevGcaaGalterlapyckrltvvdvveeaiar 80 
                 ++++l+l + ++ ++al++Gca+G  + +la +  ++t +d   + i+ 
  EHT98822.1 498 ALVKLALPHcKHHGEALDIGCATGRASFELARHFAHVTGMDYSARFIDV 546
                 67788886625679********************999999987777765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.028
        NodS  87 esshiswivsdvqqfstd.ekfdlivvaevlyyiedvaelraavrnlvsllapdgqlvfGsa 147
                 ++  i++i+ d ++++ +  ++dl++ ++++  +++ a++   ++++  +++++g lv+ s+
  EHT98822.1 583 QAKRIQFIQGDACNMKPQpTRYDLVLASNLIDRLRQPARF---LHDVTPMIRSGGLLVLSSP 641
                 456799*********987479*******998888887775...7888999999999999887 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.17      37     173 ..     515     638 ..     493     641 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                 EES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHHHTEEECCHHTTS-HH.HHHHHEEEEETTCEEE-HHHHTTEEEEE--TTT-SGGG CS
        CheR  37 sagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAkagvykeeeleglsee.lleryfekseddsykvkkeikelvkFeklnllekksvl 134
                  +gc++G  ++ lA  ++           ++++ D +++ ++ A +++  e+    ++ee  l +y  + + + ++v +e  ++++F + ++ + k+ +
  EHT98822.1 515 DIGCATGRASFELARHFA-----------HVTGMDYSARFIDVALQLTTGEDFRYVVPEEgELVEYR-QVRLKDFSVTSEQAKRIQFIQGDACNMKPQP 601
                 566666666666655444...........4899*************999988888888762567777.888889************************* PP

                 --EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE CS
        CheR 135 gklDvifcrnvliYfdeetqekvlerfaeklkpgglLll 173
                 ++ D++++ n++  +++++  + l+++  +++ gglL+l
  EHT98822.1 602 TRYDLVLASNLIDRLRQPA--RFLHDVTPMIRSGGLLVL 638
                 ***********99998886..578999999999999987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.26      16      71 ..     492     547 ..     489     563 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                 --HHHHHHHH.HCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHH CS
         MTS  16 lDkGsklLle.tlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesa 71 
                 +D+ ++ L++ +lp+  ++g++lD+Gc +G  + +la++  +  vt +d +ar +++a
  EHT98822.1 492 VDNYAEALVKlALPHCkHHGEALDIGCATGRASFELARHFAH--VTGMDYSARFIDVA 547
                 566666666623555468899*****************9998..99999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5121.67
//
Query:       EHT98823.1  [L=153]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-17   61.6   0.0    9.2e-17   60.8   0.0    1.5  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
      3e-14   52.3   0.0    5.3e-14   51.5   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
      1e-13   50.9   0.0    1.9e-13   50.0   0.0    1.5  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    9.8e-05   22.2   0.0    0.00014   21.6   0.0    1.3  1  MarR_2          MarR family
    0.00014   21.9   0.0    0.00024   21.1   0.0    1.4  1  HTH_20          Helix-turn-helix domain
    0.00049   20.0   0.0     0.0012   18.8   0.0    1.7  1  HTH_11          HTH domain
     0.0034   17.2   0.0     0.0071   16.2   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.037   14.1   0.0    1.4  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.023   14.8   0.0      0.046   13.9   0.0    1.5  1  HTH_28          Helix-turn-helix domain
      0.057   13.6   0.1       0.35   11.0   0.0    2.1  2  B-block_TFIIIC  B-block binding subunit of TFIIIC
      0.082   12.6   0.7       0.42   10.3   0.0    2.3  3  HTH_41          Helix-turn-helix domain
      0.097   12.6   0.0       0.17   11.8   0.0    1.4  1  MarR            MarR family
      0.098   12.9   0.0       0.22   11.7   0.0    1.5  1  HTH_34          Winged helix DNA-binding domain
       0.11   12.2   0.0       0.22   11.2   0.0    1.5  1  Sigma70_r4_2    Sigma-70, region 4
       0.12   12.2   0.0       0.28   11.1   0.0    1.5  1  TrmB            Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   7.7e-20   9.2e-17       6      74 ..      78     144 ..      73     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 7.7e-20
                     -GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   6 epghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     ++ +  ++ ++  +l++l+eVve++++tG y++++kv++r+++al+++l +k+++++++++tet+i l+
      EHT98823.1  78 KSAR--DYPAALSKLEALDEVVEAWYTTGHYSIFIKVMCRSIDALQQVLINKIQTIDEIQSTETLISLQ 144
                     4344..79999*******************************************************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   4.5e-17   5.3e-14       1      47 [.       7      53 ..       7      53 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 4.5e-17
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                ld +dr IL++L +n+r+ ++eLA++ ++Sp+t++ r+++++++G+I
  EHT98823.1  7 LDNLDRGILNALLENARTAYAELAKQFNVSPGTIHVRVEKMKQAGII 53
                799*******************************************9 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.6e-16   1.9e-13       1      42 []       7      48 ..       7      48 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.6e-16
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD +Dr IL+aL e+aR+ yaeLA++ ++S+ t++ Rv++++
     EHT98823.1  7 LDNLDRGILNALLENARTAYAELAKQFNVSPGTIHVRVEKMK 48
                   8***************************************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.2e-07   0.00014       6      51 ..      10      53 ..       5      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.2e-07
                HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  6 aqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLv 51
                 ++ +L+aL  + +   + +ela+ +++s+++++ +++++ +aG +
  EHT98823.1 10 LDRGILNALLENAR--TAYAELAKQFNVSPGTIHVRVEKMKQAGII 53
                57889*******98..8***************************99 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     2e-07   0.00024      13      59 ..      12      58 ..       7      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-07
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                r+il aL +++    +ela+++ +s+ t++ +++++ +ag++ ++r+
  EHT98823.1 12 RGILNALLENARTAYAELAKQFNVSPGTIHVRVEKMKQAGIILGTRV 58
                89*****99999999****************************9997 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.8e-07    0.0012      17      44 ..      25      56 ..      12      67 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.8e-07
      HTH_11 17 sgeeLAeeLnvSrrtvrrdIkaLeelg....v 44
                  +eLA+++nvS  t++ ++++++ +g     
  EHT98823.1 25 AYAELAKQFNVSPGTIHVRVEKMKQAGiilgT 56
                568************************44443 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.9e-06    0.0071       7      45 ..      14      53 ..      12      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.9e-06
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                IL++L e   +   ela+++++s++t+     k+++aG++
  EHT98823.1 14 ILNALLEnARTAYAELAKQFNVSPGTIHVRVEKMKQAGII 53
                9******5557789************************97 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.1e-05     0.037      10      45 ..      14      48 ..      10      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
     HTH_Mga 10 LlelLteneksltldelakeLglseltlqsdiseLn 45
                +l++L+e + ++ + elak+ + s  t+  ++++++
  EHT98823.1 14 ILNALLE-NARTAYAELAKQFNVSPGTIHVRVEKMK 48
                89*****.*******************999999888 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.8e-05     0.046       6      41 ..      15      52 ..      13      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-05
      HTH_28  6 ikllaaGh..svreaArelgisrrtvyrWikryeegGi 41
                + +l++    +++e+A+++++s+ t+ + + +  + Gi
  EHT98823.1 15 LNALLENArtAYAELAKQFNVSPGTIHVRVEKMKQAGI 52
                55666542259***************999999999997 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0003      0.35      23      53 ..      28      58 ..      25      85 .. 0.90
   2 ?   -0.0   0.1      0.85     1e+03      40      62 ..     118     137 ..     111     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0003
  B-block_TFIIIC 23 dLakeskqdprslfyrlksLekkgLIvkqsi 53
                    +Lak ++ +p  ++ r+ ++++ g I +  +
      EHT98823.1 28 ELAKQFNVSPGTIHVRVEKMKQAGIILGTRV 58
                    89**********************9977655 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.85
  B-block_TFIIIC  40 ksLekkgLIvkqsiidsatkksi 62 
                     ++L++  LI k+++  + +++s+
      EHT98823.1 118 DALQQ-VLINKIQT--IDEIQST 137
                     56666.89999999..3333333 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00035      0.42      11      36 ..      28      53 ..      25      57 .. 0.93
   2 ?   -2.9   0.1       4.7   5.6e+03      25      32 ..      85      92 ..      85      97 .. 0.77
   3 ?   -0.6   0.0      0.95   1.1e+03       4      13 ..     126     135 ..     126     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
      HTH_41 11 elakeleLSvGlvQkALklLeddkai 36
                elak++ +S G++   +++++++++i
  EHT98823.1 28 ELAKQFNVSPGTIHVRVEKMKQAGII 53
                89**********************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.7
      HTH_41 25 kALklLed 32
                +AL +Le+
  EHT98823.1 85 AALSKLEA 92
                69999997 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.95
      HTH_41   4 dRlktIeela 13 
                 ++++tI+e+ 
  EHT98823.1 126 NKIQTIDEIQ 135
                 799***9975 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.17      21      47 ..      27      53 ..      14      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                HHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR 21 seLakklgvskstvtrvldrLekkGli 47
                +eLak+++vs++t+   + ++ ++G i
  EHT98823.1 27 AELAKQFNVSPGTIHVRVEKMKQAGII 53
                59***********************99 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00018      0.22       5      44 ..      14      53 ..      12      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      HTH_34  5 vlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYi 44
                +l  L+++ +  ++el ++ +++ g + v ++k+++ag i
  EHT98823.1 14 ILNALLENARTAYAELAKQFNVSPGTIHVRVEKMKQAGII 53
                8999*********************************977 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018      0.22      29      49 ..      26      46 ..      23      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                  HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 29 ykEIAellgisegtVksrlsR 49
                  y+E A+++++s+gt+  r+ +
    EHT98823.1 26 YAELAKQFNVSPGTIHVRVEK 46
                  9**************999865 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.28       6      52 ..       7      53 ..       3      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                HHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSE CS
        TrmB  6 LseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlV 52
                L   +  +  aLl++ +    e+a++ +v+  ++   +++++++G++
  EHT98823.1  7 LDNLDRGILNALLENARTAYAELAKQFNVSPGTIHVRVEKMKQAGII 53
                5566667788***********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1196.57
//
Query:       EHT98824.1  [L=146]
Description: FMN-binding protein MioC [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-26   91.3   0.0    7.2e-26   91.1   0.0    1.0  1  Flavodoxin_1  Flavodoxin
     0.0017   18.1   0.0     0.0029   17.4   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0     8e-30   7.2e-26       2     143 .]       7     138 ..       6     138 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 8e-30
                   EEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEECT CS
  Flavodoxin_1   2 lYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGds 98 
                   + gS+ G++e +A++l e+l+e+gf++++++  ++     e+++e ++lvv sT+g G++p+n + +f+d +++       +dls vrf  +g G++
    EHT98824.1   7 ISGSTLGSAEYVAEHLEEKLQEAGFSTQMLHGPELG----EVPQEGIWLVVSSTHGAGELPDNLQ-PFYDAINES-----RPDLSAVRFGAVGIGNH 93 
                   679**********************98888777777....89*********************99.999999999.....579************** PP

                   TSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  99 ayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   +y  Fc a++ +d +l + Ga+r+++ le+d   +e  e+  ++W
    EHT98824.1  94 EYDLFCGAIRNIDALLIACGAQRIGERLEIDILEHEIPEDPAEEW 138
                   *******************************99988888888888 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.2e-07    0.0029       3      72 ..       4      75 ..       2      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.2e-07
                EEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEE...TTTS.--.....---HCHGHTCGGSHHHHHHHHHHHH CS
     FMN_red  3 ilvisGSlrkgsntrklaewaaealkeagaevelid...ladlilpc...alcdkdlesegqtsddvaellekiaa 72
                i +isGS+   ++ + +ae+++e l+eag+ +++++   l++   p+    l+++ ++ +g+ +d+++ ++++i++
  EHT98824.1  4 ITLISGSTL--GSAEYVAEHLEEKLQEAGFSTQMLHgpeLGE--VPQegiWLVVSSTHGAGELPDNLQPFYDAINE 75
                899****96..99**********************9555555..5556688888888888************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1229.29
//
Query:       EHT98825.1  [L=629]
Description: glucose-inhibited cell-division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-169  564.3   0.0   1.9e-169  563.9   0.0    1.1  1  GIDA           Glucose inhibited division protein A
    4.2e-77  259.1   0.5      6e-77  258.6   0.5    1.2  1  GIDA_assoc     GidA associated domain
    1.4e-07   31.3   4.3    2.9e-07   30.2   4.3    1.5  1  FAD_oxidored   FAD dependent oxidoreductase
    1.7e-07   30.7   4.2    0.00018   20.8   0.2    2.9  3  FAD_binding_2  FAD binding domain
    1.9e-05   24.0   1.2    6.8e-05   22.2   1.2    1.9  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    3.8e-05   23.1   0.8     0.0001   21.7   0.8    1.8  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    8.1e-05   21.5   2.3     0.0014   17.5   0.2    2.7  3  HI0933_like    HI0933-like protein
     0.0022   17.6   0.5        1.9    8.0   0.1    2.3  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.016   15.8   0.2      0.063   13.8   0.2    2.1  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.033   14.1   0.0      0.096   12.6   0.0    1.8  1  MarR_2         MarR family
      0.039   13.2   1.7       0.31   10.2   1.7    2.0  1  Thi4           Thi4 family
       0.14   11.4   0.0       0.33   10.2   0.0    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  563.9   0.0  1.3e-172  1.9e-169       1     391 [.       8     398 ..       8     399 .. 0.99

  Alignments for each domain:
  == domain 1  score: 563.9 bits;  conditional E-value: 1.3e-172
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelysk 99 
                 dviViGgGhAG+eAA+ aar+G ++lL+th++dt++++sCnp+iggi+kg+lv+E+dalggl+++a+d+agiqfrilN+skGpavra+raq+dr ly++
  EHT98825.1   8 DVIVIGGGHAGTEAAMSAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQ 106
                 8************************************************************************************************** PP

                 HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC--B-THHHHHHHTT--EEEEEEEE--EE CS
        GIDA 100 evteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgeltseglseslkelgfellrlktgtppri 198
                 +v+ +len+pnl i+++ v++live+++v g vt++g +++ak+vv++ Gtfl+gkihig +++s Gr+g+++s  l+++l++l+ ++ rlktgtppri
  EHT98825.1 107 AVRTALENQPNLMIFQQAVDDLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKRLRALPLRVNRLKTGTPPRI 205
                 *************************************************************************************************** PP

                 EGGGS-TTTSEEE---SS-B-SSSSSSST.CG----EEEEE--HHHHHHHHCTCCC-T.T----B--S-CCC-SSTCCCCCCSTT-S--EEEEEESSTT CS
        GIDA 199 dkesidfskleeqsgdkegeefsylnkpl.nkeqvecfltatneathkiikenlkksaklfegcieelgprycpsiedkivrladkeshqvfLepegle 296
                 d++sidfs+l  q+gd++++ fs++ +   + +qv+c++t+tne+th++i++nl++s+ ++ g ie++gprycpsiedk++r+ad++shq+fLepegl+
  EHT98825.1 206 DARSIDFSVLSLQHGDNPMPVFSFMGSASqHPQQVPCWITYTNEKTHDVIRNNLDRSP-MYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLT 303
                 *****************9*********995699*************************.**************************************** PP

                 --EEEEET----S-HHHHHHHHTTSTT-TT--EEE--EEEEEEEE-GGGB-TTSBBSSSBTEEE-CGGGTB-SHHHHHHHHHHHHHHHHHHHCTS CS
        GIDA 297 teliylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqllntLetkkvkgLflAGqinGteGYeEaaaqGllAGinaarkakgk 391
                 +++iy++g+stslp++vq +++rs++G+ena+ivrpGyaieyd++dpr+l++tLe+k + gLf+AGqinGt+GYeEaaaqGllAG+naar++++k
  EHT98825.1 304 SNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIAGLFFAGQINGTTGYEEAAAQGLLAGLNAARQSADK 398
                 ******************************************************************************************99876 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   0.5     4e-80     6e-77       3     210 .]     403     616 ..     401     616 .. 0.91

  Alignments for each domain:
  == domain 1  score: 258.6 bits;  conditional E-value: 4e-80
                 --TTT-HHHHHHHHHHHH--SS-B-CCCB--TTTCCC-CCCHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHH......HH CS
  GIDA_assoc   3 lkRseaYiGVLiDDLvtkgvkEPYRmfTSRaEyRlllRaDnAdlRLtekgrelGlvseeryekfeekkeeieelkellkstklkseewkkl.....lek 96 
                  +R++aY+GVL+DDL+t g+kEPYRmfTSRaEyRl+lR+DnAdlRLte+grelGlv+++r+++f++k e+ie+++++l+++++++++++ +     +++
  EHT98825.1 403 PRRDQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRLRDIWVHPKSANIAdvntvTSA 501
                 68*********************************************************************************6666655543443444 PP

                 HT....EHHHHCTTST--HHHHHCCHHHHHHHSCHH.HHHHHHHHHCHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHH CS
  GIDA_assoc  97 keskklslaellkrpevkledlleelpeeeeeseee.leqveieakYegyiekqeeeieklkkeenlkipedldYskikgLskearekLkkvrPetlgq 194
                   +k+ s  +ll+rpe+++ +l++  +   + ++e+ +eqvei++kYegyi++q+eeie+  ++en+ +p++ldY+++++Ls+e++ kL++++P+++gq
  EHT98825.1 502 PLTKEASGEDLLRRPEMTYLKLMTLEAFGPALTDEQaAEQVEIQVKYEGYIARQQEEIERQLRNENTLLPATLDYRQVSSLSNEVIAKLNDHKPTSIGQ 600
                 44555599**************877777777777777************************************************************** PP

                 HTTSTTS-HHHHHHHH CS
  GIDA_assoc 195 AsrisGvtpaaisvLl 210
                 AsrisG+tpaais+Ll
  EHT98825.1 601 ASRISGITPAAISILL 616
                 *************995 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   4.3   1.9e-10   2.9e-07       1     139 [.       8     151 ..       8     154 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.9e-10
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLve.ergvlGGlltsglvatdignkaee..qvvtgiareflerlrq....rggarlkkrskw..n.....t 83 
                   Dv+V+GGg aG+ AA++Aar+G+++lL+  + + lG ++ + + + + + +  +   + +g++   +++        +++      k   +      
    EHT98825.1   8 DVIVIGGGHAGTEAAMSAARMGQQTLLLThNIDTLGQMSCNPAIGGIGKGHLVKevDALGGLMASAIDQAGIqfriLNAS------KGpaVratraQ 98 
                   9************************9887255777777777666666655555456677777766666653322221111......11111222224 PP

  FAD_oxidored  84 fepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvf 139
                    +   +++++   l+++   +++++ +++ ++e++r+ + +++    + ++rAk +
    EHT98825.1  99 ADRVLYRQAVRTALENQPNLMIFQQAVDDLIVENDRVVGAVTQM---GLKFRAKTV 151
                   67777777777777555555677778888888887888777755...677777765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   1.2e-07   0.00018       1      30 [.       8      37 ..       8      48 .. 0.93
   2 !    9.8   0.1   0.00025      0.37     149     202 ..     109     158 ..      64     167 .. 0.80
   3 ?   -0.2   0.0      0.28   4.2e+02      37      73 ..     378     412 ..     370     507 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.2e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   DviViG+G AG  AA++aa+ G+++++++ 
     EHT98825.1  8 DVIVIGGGHAGTEAAMSAARMGQQTLLLTH 37
                   9*************************9975 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00025
                    HHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE----- CS
  FAD_binding_2 149 esarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGf 202
                    ++a++++   + ++ ++d+Live++rv+Gav +        ++rak vvl+ g f
     EHT98825.1 109 RTALENQpNLMIFQQAVDDLIVENDRVVGAVTQ-----MGLKFRAKTVVLTVGTF 158
                    4444444455678999**************998.....44568999999999887 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.28
                    GGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHT CS
  FAD_binding_2  37 atawsqGgidavlspeqkkagikdspelhrtdtlkal 73 
                    + a++qG ++ ++   q  + +kds+   r +++ ++
     EHT98825.1 378 EEAAAQGLLAGLNAARQ--SADKDSWAPRRDQAYLGV 412
                    67899999999995555..667799887777766555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.2   4.6e-08   6.8e-05       1     108 [.       7     156 ..       7     165 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.6e-08
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias......................................... 57 
                  +dv+viGgG+AG++aa+ +a+ g +++l+   +   +g+++  +a+ g+++ + + +                                         
   EHT98825.1   7 FDVIVIGGGHAGTEAAMSAARMGQQTLLL-THNIDTLGQMSCNPAIGGIGKGHLVKEvdalgglmasaidqagiqfrilnaskgpavratraqadrvl 103
                  69************************999.56655666666666666666555433355566666655555555555555666666666665555554 PP

                  ......HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE--- CS
                  ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ......evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtG 108
                          ++++ + +++  +  v +++ ++ +v+    +++ + k+ ++++vl  G
   EHT98825.1 104 yrqavrTALENQPNLMIFQQA--VDDLIVENDRVVGA--VTQMGLKFRAKTVVLTVG 156
                  444333111111222222222..55555455444442..334555666666666555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.8     7e-08    0.0001      29      69 ..       7      47 ..       4     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7e-08
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69
                   v+viGgG aG++A+  a+++g+++ +l  ++++l q++ 
   EHT98825.1  7 FDVIVIGGGHAGTEAAMSAARMGQQTLLLTHNIDTLGQMSC 47
                 579******************************99998864 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   9.1e-07    0.0014       1      32 [.       7      38 ..       7      48 .. 0.91
   2 ?   -1.3   0.0      0.44   6.6e+02     117     163 ..     110     156 ..      95     158 .. 0.82
   3 ?    2.5   0.0     0.032        48     369     391 ..     356     375 ..     352     389 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.1e-07
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllleka 32
                 +dviviGgG AG  aA+saa+ g+++lll ++
   EHT98825.1  7 FDVIVIGGGHAGTEAAMSAARMGQQTLLLTHN 38
                 59**************************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.44
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  ++l+++   +  +++v ++  e+d+++   t+ + +++a+++vl++G
   EHT98825.1 110 TALENQPNLMIFQQAVDDLIVENDRVVGAVTQMGLKFRAKTVVLTVG 156
                  55666666677899999*99999999999999999*********999 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.032
                  T-BBTTSTTEEE-GGGBSEEE-T CS
  HI0933_like 369 tmeskkvpgLffaGEvlDvegvt 391
                  t+esk + gLffaG +   +g t
   EHT98825.1 356 TLESKFIAGLFFAGQI---NGTT 375
                  99************76...4444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0013       1.9       1      26 [.       8      35 ..       8      51 .. 0.85
   2 !    7.8   0.0    0.0014       2.1     139     207 ..      96     163 ..      55     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
                EEEEECTSHHHHHHHHHHHHTT..EEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtll 26
                dv++iGGG +G  +A+ +ar g  ++ll
  EHT98825.1  8 DVIVIGGGHAGTEAAMSAARMGqqTLLL 35
                8*****************9989876666 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
                 TEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 139 dtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.ll 207
                   +q+d   + +a++ a+e++   ++++  v +l  e+++v+g   +t+ g +++a++vV++ G + d ++
  EHT98825.1  96 R-AQADRVLYRQAVRTALENQPNLMIFQQAVDDLIVENDRVVGA--VTQmGLKFRAKTVVLTVGTFLDgKI 163
                 3.777777888888888888888888889****87777899999..8899*9955699******9988755 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   4.2e-05     0.063       2      35 ..       9      42 ..       8      62 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.2e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v+v+GgG  g E+A  +a++g+++ ++  +   l
  EHT98825.1  9 VIVIGGGHAGTEAAMSAARMGQQTLLLTHNIDTL 42
                89********************996665544443 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-05     0.096      10      54 ..     586     628 ..     584     629 .] 0.91

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
                 HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54 
                 v+a L ++ +   ++g+  r  g++++a+s +l  L ++GL++++
  EHT98825.1 586 VIAKLNDHKP--TSIGQASRISGITPAAISILLIYLKKQGLLRKS 628
                 6677888998..8*****************************987 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.7   0.00021      0.31      19     139 ..       8     142 ..       3     151 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT....TTTSTTBSEEEEETTT.....HHHHHHTT---E..EESSEEEE......SEHHHHH CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGa....wlGGqlfsaivvrkpa.....kelLdelgikye..degdyvvv......kdaalft 100
                 Dv+++G+G +G  aa   a+  + ++++l +++   G +      GG    ++v + +a        +d+ gi++   +  ++  v      +d +l+ 
  EHT98825.1   8 DVIVIGGGHAGTEAAMSAARM-GQQTLLLTHNIDTLGQMscnpAIGGIGKGHLVKEVDAlgglmASAIDQAGIQFRilNASKGPAVratraqADRVLYR 105
                 9****************9999.99999999999877766222246888888888777763322234567778776422444444441122224556677 PP

                 HHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEE CS
        Thi4 101 stllskvlqlanvkllnavaveDlivregegvaGvvinw 139
                   + +++ +++n+ +++  av+Dliv + ++v G v++ 
  EHT98825.1 106 QAVRTALENQPNLMIFQQ-AVDDLIVEN-DRVVGAVTQM 142
                 777777778899999975.89*****99.9999999986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00022      0.33     166     196 ..       8      38 ..       3      51 .. 0.87
   2 ?   -3.5   0.0       3.2   4.7e+03     115     135 ..     138     158 ..      79     159 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
  Pyr_redox_3 166 kvvViGgknSavDaAlelvrkgaeVtvvtrg 196
                  +v+ViGg+  + +aA+  +r+g++  ++t++
   EHT98825.1   8 DVIVIGGGHAGTEAAMSAARMGQQTLLLTHN 38 
                  799******************9998888765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
  Pyr_redox_3 115 evetsketyeAkkviiAtGef 135
                   v++   +++Ak+v++  G f
   EHT98825.1 138 AVTQMGLKFRAKTVVLTVGTF 158
                  344444577777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 4675.60
//
Query:       EHT98826.1  [L=205]
Description: ribosomal RNA small subunit methyltransferase G [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-63  211.6   0.0    6.7e-63  211.3   0.0    1.0  1  GidB             rRNA small subunit methyltransferase G
    1.5e-05   24.8   0.0    2.1e-05   24.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    0.00011   22.8   0.0     0.0002   22.0   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.23   11.0   0.0    1.3  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.3   0.0   1.5e-66   6.7e-63       1     184 []      20     200 ..      20     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.3 bits;  conditional E-value: 1.5e-66
                 HHHHHHHHHHHHHHHHHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SS CS
        GidB   1 qleklkkYlelllkwNkkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklen 99 
                 q+++l +Y+ ll kwNk++nLts+++p+++l rh+lds++v+++lk +r  +iDvG+G+GlPGipL+i+ p+ ++tLl+sl k+++FL++v++el+l+n
  EHT98826.1  20 QKQQLVAYVGLLDKWNKAYNLTSVRDPQQMLVRHILDSIVVAPHLKGAR--FIDVGTGPGLPGIPLSIVMPDAHFTLLDSLGKRVRFLRQVQHELGLTN 116
                 689**********************************************..************************************************ PP

                 EEEEES-CCCTTTTT-EEEEEEC-SSSHHHHHHHHCCCEEEEEEEEEEESS--HHHHHCCHCCCCCCCEEEEEEEEEE-TEEEEE CS
        GidB 100 veivearaeekqeeekydvvtsRAlaslnelteillkllkegglilalKGksaedeleekekalqlskvevlsvkslkekerhlv 184
                 ++ v++r+e++  e ++d v+sRA+asl+++++++++l  e g ++alKG ++ de+++  + ++l++v+ l+v++l e+erhlv
  EHT98826.1 117 ITPVQSRVEDFPAEPPFDGVISRAFASLDDMVSWCHHLPAEDGHFYALKGVRPDDEIANLPAGYALDSVVALRVPQL-EGERHLV 200
                 *****************************************************************************.6669986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.8e-09   2.1e-05       3      85 ..      65     145 ..      63     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.8e-09
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..n 85 
                      kg r++D+G+G G  ++ l   + p+a+++++D   + +++ r+   +lgl+n++  q+ +e+++   e  +fD ++s+++   +
       EHT98826.1  65 KGARFIDVGTGPGLPGIPLS-IVMPDAHFTLLDSLGKRVRFLRQVQHELGLTNITPVQSRVEDFP--AE-PPFDGVISRAFAslD 145
                      78899***************.********************************************..55.79*****98554441 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.5e-08    0.0002       2      77 ..      70     144 ..      69     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.5e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhl 77 
                      +d+G+G+G   + l+  +++a++t +D   + ++  r+  +e gl n++ vq  +ed+p e   fD v+s  a+  l
       EHT98826.1  70 IDVGTGPGLPGIPLSIVMPDAHFTLLDSLGKRVRFLRQVQHELGLtNITPVQSRVEDFPAEP-PFDGVIS-RAFASL 144
                      69*************99899********************99999**************887.*******.465544 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.1e-05      0.23      31     102 ..      65     137 ..      42     139 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.1e-05
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdliv 102
                 +  + +D+G+G G+ g+ l    p+a+ tl+d   + +++ ++  ++ +l  ++ v+s v +  +e  fd ++
  EHT98826.1  65 KGARFIDVGTGPGLPGIPLSIVMPDAHFTLLDSLGKRVRFLRQVQHELGLTnITPVQSRVEDFPAEPPFDGVI 137
                 55779***************************99999999888887777776666666555555555666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1660.47
//
Query:       EHT98827.1  [L=127]
Description: ATP synthase, membrane-bound accesory subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-14   53.2  16.6    4.1e-14   52.8  16.6    1.2  1  ATP-synt_I  ATP synthase I chain
  ------ inclusion threshold ------
        3.3    7.7  12.6        7.4    6.6   1.4    2.5  2  SecE        SecE/Sec61-gamma subunits of protein translocatio


Domain annotation for each model (and alignments):
>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8  16.6   4.5e-18   4.1e-14       2      97 ..      14     107 ..      13     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 4.5e-18
  ATP-synt_I   2 ivliqlvllavlalgwlltgsasvalsallGglisvlpfalfalrvfrfsgalarkkkkivrslylgeairlaltiallilalklvkelsllallv 97 
                 +++iqlv ++++ ++++ ++  +++ sal+Gg++++lp++lf + ++r++g+  + ++++++s++lge+ ++++ti+lli+al +   + ++++ v
  EHT98827.1  14 VLMIQLVTIVIVGVLFFALKDMTWGASALAGGVAAWLPNVLFLFIAWRLQGQTPA-SGRVAWSFALGEIAKVFATIILLIVALGV-FDAVFWPVGV 107
                 5789***********************************************7766.****************************9.7777777765 PP

>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.4   0.00083       7.4      23      43 ..      17      32 ..       8      42 .. 0.67
   2 ?    6.1   4.0    0.0012        10      29      52 ..      84     106 ..      78     109 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00083
                HHHHHHHHHHHHHHHHHHHHH CS
        SecE 23 lkttvvVlvfvvimglflflv 43
                ++  ++V+v+v++++     +
  EHT98827.1 17 IQLVTIVIVGVLFFA-----L 32
                444455555555554.....4 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE  29 VlvfvvimglflflvDlvfsklin 52 
                 V+++++++ + l+++D vf ++++
  EHT98827.1  84 VFATIILLIVALGVFDAVF-WPVG 106
                 99*****************.9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1037.97
//
Query:       EHT98828.1  [L=272]
Description: F0 sector of membrane-bound ATP synthase, subunit a [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-54  185.1  20.4    1.9e-54  184.8  20.4    1.1  1  ATP-synt_A  ATP synthase A chain
  ------ inclusion threshold ------
       0.12   12.6   3.5        2.1    8.6   0.6    2.3  2  DUF3333     Domain of unknown function (DUF3333)
       0.59   10.0   8.9       0.34   10.8   3.3    2.2  2  CHD5        CHD5-like protein


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8  20.4   3.1e-58   1.9e-54       1     211 []      47     266 ..      47     266 .. 0.88

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 3.1e-58
                 HHHHHHHHHHHHCCC.CCSS.T.TTTSHHHHHHHHHHHHHHHHHHHHCTSSSTXHHHHHHHHHHHHHHHHHCCHCCSST................TTTT CS
  ATP-synt_A   1 vlttlivllilllllllatrkkkkklpgklqnlvealvefvdnlvksvigkkkkkkffpliltlflfilvsNllgliPg................lraa 83 
                 ++++l++ +i+l+l+  ++++ ++++pgk+q+++e++v fvd+ v+++ + +k k ++pl+lt+f++++++N+++l+P+                   +
  EHT98828.1  47 MFFSLVLGVIFLVLFRSVAKSVTSGVPGKMQAAIELVVGFVDSNVRDMYH-GKSKLIAPLALTIFVWVFLMNFMDLLPIdllpyigehwlglpalRVVP 144
                 57788899999988888888788889***********************5.3679********************996666666777777777767778 PP

                 TCHHHHHHHHHHHHHHHHHHHHHHHHGG..GGCHHH..SS.SCCCCHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTGCCCTTCHH CS
  ATP-synt_A  84 tadinvtlalAlivfllvlilgikkkglkgyfkklf..vp.plllvplllpielisefarpvsLalRLfgNifAGelllallagllllllllavllsvl 179
                 +ad+n+tl++Al vf+l+l+++ik kg++g+ k+l+  +  + +++p++l++e +s +++pvsL+lRLfgN++AGel+++l+agll  +         +
  EHT98828.1 145 SADVNITLSMALGVFILILFYSIKMKGIGGFTKELTlqPFnHPIFIPINLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLP-W---------W 233
                 ***********************************96522788899*************************************8852.2.........2 PP

                 H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A 180 i.lllavlllllelfvgfiQAfvFtlLtlvYis 211
                 + ++l+v++++++++++ +QAf+F++Lt+vY+s
  EHT98828.1 234 SqWVLNVPWAIFHILIISLQAFIFMVLTIVYLS 266
                 225689*************************96 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0067        40      20      60 ..      49      91 ..      46     104 .. 0.82
   2 ?    8.6   0.6   0.00035       2.1      27      46 ..     158     177 ..     150     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0067
     DUF3333 20 aAialallfLviL..lvsIvskGltAFtqteitleveldaeei 60
                ++++l+++fLv++  +++ v++G+++ +q+ i+l v +  +++
  EHT98828.1 49 FSLVLGVIFLVLFrsVAKSVTSGVPGKMQAAIELVVGFVDSNV 91
                689999***9877555677999**************9988766 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00035
     DUF3333  27 lfLviLlvsIvskGltAFtq 46 
                 +f++iL++sI  kG+++Ft+
  EHT98828.1 158 VFILILFYSIKMKGIGGFTK 177
                 58899*************97 PP

>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.023   1.4e+02     108     144 ..     104     140 ..      89     163 .. 0.80
   2 ?   10.8   3.3   5.7e-05      0.34     116     157 ..     215     258 ..     199     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.023
        CHD5 108 tvpqlvlkfwyrktpvfylpkgwfPllvewllslpla 144
                  +  +++ + +  + +  lp +++P++ e +l lp +
  EHT98828.1 104 PLALTIFVWVFLMNFMDLLPIDLLPYIGEHWLGLPAL 140
                 5667788888889999999**********99998864 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 5.7e-05
        CHD5 116 fwyrktpvfylpkgwfPllvewllslplaplg..sVSltiWlfa 157
                  +y+ + +f+l  g++P++ +w+l++p a+ +   +Sl++++f+
  EHT98828.1 215 NMYAGELIFILIAGLLPWWSQWVLNVPWAIFHilIISLQAFIFM 258
                 5789999******************9999988778999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2036.48
//
Query:       EHT98829.1  [L=79]
Description: F0 sector of membrane-bound ATP synthase, subunit c [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-09   37.4  10.4    3.2e-09   37.0  10.1    1.3  1  ATP-synt_C  ATP synthase subunit C
  ------ inclusion threshold ------
      0.037   13.8   0.4      0.043   13.5   0.4    1.2  1  HlyIII      Haemolysin-III related


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  10.1   3.6e-13   3.2e-09       1      55 [.      11      69 ..      11      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3.6e-13
                HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  1 lgaglavGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLi 55
                ++a++++Gl+a+g++igiG++g++ +++ ar+p     l+t+++++++++ ai ++++ 
  EHT98829.1 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPdlipLLRTQFFVVMGLVDAIPMIAVG 69
                69*******************************999999999***********998875 PP

>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   4.8e-06     0.043     108     158 ..       8      69 ..       1      78 [. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-06
      HlyIII 108 llylslilalgvlgiisklvplfsr...........pearplravlfillgllgvipllhll 158
                 lly++  +++g+++i   +                   + +lr+ +f+++gl++ ip++ + 
  EHT98829.1   8 LLYMAAAVMMGLAAIGAAIGIGILGgkflegaarqpDLIPLLRTQFFVVMGLVDAIPMIAVG 69 
                 55555555666555555555554334555567766566699****************99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 597.29
//
Query:       EHT98830.1  [L=156]
Description: F0 sector of membrane-bound ATP synthase, subunit b [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-37  128.1  19.8    2.6e-37  127.8  19.8    1.1  1  ATP-synt_B       ATP synthase B/B' CF(0)
     0.0002   21.0   4.6    0.00041   20.0   4.6    1.5  1  Mt_ATP-synt_B    Mitochondrial ATP synthase B chain precursor
  ------ inclusion threshold ------
      0.011   16.2  21.3       0.03   14.8  17.8    2.6  2  V-ATPase_G       Vacuolar (H+)-ATPase G subunit
      0.045   13.8  21.9      0.033   14.3  17.9    2.1  2  DivIVA           DivIVA protein
      0.091   12.4   0.1       0.15   11.7   0.0    1.4  2  FNIP_C           Folliculin-interacting protein C-terminus
       0.22   12.0   4.7       0.46   10.9   4.7    1.5  1  ESM4             Enhancer of split M4 family
       0.26   11.6  10.7      0.098   12.9   1.1    3.1  3  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai
       0.35   11.3  25.3        0.4   11.1  24.3    1.7  1  V-ATPase_G_2     Vacuolar (H+)-ATPase G subunit
        1.7    7.6   7.4        2.2    7.3   7.4    1.0  1  CRISPR_Cse1      CRISPR-associated protein Cse1 (CRISPR_cse1)


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8  19.8   1.3e-40   2.6e-37       1     132 []       6     137 ..       6     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.3e-40
  ATP-synt_B   1 tlvvnliallilvgllikfawkplkkvLdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkes 99 
                 t++ ++ia++++v++++k++w+p++ +++kR+++Ia+++a+Ae+++k++  ++a+a++qlk+A+ eA+ ii++A+k++ ++ +e+++ea +e +r+ ++
  EHT98830.1   6 TILGQAIAFILFVAFCMKYVWPPIMAAIEKRQKEIAEGLASAERAKKDLYLAQANATDQLKKAKEEAQVIIEQANKRRTQILDEAKTEADNERTRIVAQ 104
                 6889*********************************************************************************************** PP

  ATP-synt_B 100 AaaeIeqekdralaeLreqvvalavqiaeklle 132
                 A+aeI++e++ra++eLr+qv+ la+++aek++e
  EHT98830.1 105 AQAEIDAERKRAREELRKQVALLAMAGAEKIIE 137
                 *******************************95 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   4.6     2e-07   0.00041      20     116 ..      11     110 ..       8     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH...HHHHHCHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  20 alcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqekklqslveltkslfevs...keqvaleaeaferelqaklareik 112
                    a+ fi+f+ +  k++ p i + ++kr ++i e l ++ + k++ +    +   +l++ +e+ ++++e     ++q+  ea++   + ++++ ++++
     EHT98830.1  11 AIAFILFVAFCMKYVWPPIMAAIEKRQKEIAEGLASAERAKKDLYLAQANATDQLKKAKEEAQVIIEQAnkrRTQILDEAKTEADNERTRIVAQAQ 106
                    789**********************************************************99998754111344444555555566666666666 PP

                    HHHH CS
  Mt_ATP-synt_B 113 kkld 116
                      +d
     EHT98830.1 107 AEID 110
                    6655 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.0   0.00069       1.4       3      44 ..      37      78 ..      35      78 .. 0.86
   2 ?   14.8  17.8   1.5e-05      0.03       2      89 ..      58     145 ..      57     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00069
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G  3 sqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEiee 44
                ++ I++ L+  ++A++ +  A+ + +++lk+AkeeA+  ie+
  EHT98830.1 37 QKEIAEGLASAERAKKDLYLAQANATDQLKKAKEEAQVIIEQ 78
                5667777777789************************98876 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHH CS
  V-ATPase_G   2 qsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvkkn 89 
                 q ++ +qL +A +eA+ i+++A kr+++ l +Ak+eA +E  +  a+ ++e+  +++++  +  + ++ +    +eki e + + ++n
  EHT98830.1  58 QANATDQLKKAKEEAQVIIEQANKRRTQILDEAKTEADNERTRIVAQAQAEIDAERKRAREELRKQVALLAMAGAEKIIERSVDEAAN 145
                 667889*******************************999999999999999888887766655555555555555554444333333 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  17.9   1.7e-05     0.033      48     117 ..      33     102 ..      29     117 .. 0.77
   2 ?    2.4   4.7     0.076   1.5e+02      80     112 ..      91     123 ..      89     140 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                 HHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  48 vkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeie 117
                 +++ +++++e     e  kk l +aq  a +  ++ak+ea++ii++A+k+ ++i++ea+ ea++ +++i 
  EHT98830.1  33 IEKRQKEIAEGLASAERAKKDLYLAQANATDQLKKAKEEAQVIIEQANKRRTQILDEAKTEADNERTRIV 102
                 5556666666555555557779**********************************99999988776654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.076
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  80 kanakkeaeliikeAekkaekiveeaeeeakki 112
                 k++a +e + i+++A+++ ++  + a+ee++k 
  EHT98830.1  91 KTEADNERTRIVAQAQAEIDAERKRAREELRKQ 123
                 555666666666666666555555555555554 PP

>> FNIP_C  Folliculin-interacting protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05      0.15      25      97 ..      16      96 ..       4     109 .. 0.82
   2 ?   -3.0   0.0       2.5   4.9e+03      51      72 ..     134     155 ..     123     155 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
      FNIP_C 25 LlaglcdsYvpdfVLqGvtkseeklkevlsk........dlssavessvldepvaEavcivaDtdkwtvkvlssessklsk 97
                L+  +c++Yv+  ++ ++ k ++++ e l++         l++a  +  l+++ +Ea +i+   +k   ++l + +++ ++
  EHT98830.1 16 LFVAFCMKYVWPPIMAAIEKRQKEIAEGLASaerakkdlYLAQANATDQLKKAKEEAQVIIEQANKRRTQILDEAKTEADN 96
                8999****************999999999888889985555566666779999*******************999643333 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.5
      FNIP_C  51 evlskdlssavessvldepvaE 72 
                 + +++++ +a++s ++d+ vaE
  EHT98830.1 134 KIIERSVDEAANSDIVDKLVAE 155
                 5566677777777777777776 PP

>> ESM4  Enhancer of split M4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.7   0.00023      0.46      30     113 ..      22     113 ..      18     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
        ESM4  30 lkkvlkpLrrllkkggkgrkteltlahpnnvdlentqqqqqqqqe........eldednssnaeLeqqlveeevek.saqscaacahgrncqh 113
                 +k v+ p++  ++k++k+  + l +a++ ++dl   q +++ q++         +++ n++++++  ++  e  ++  ++ +a+ ++++  + 
  EHT98830.1  22 MKYVWPPIMAAIEKRQKEIAEGLASAERAKKDLYLAQANATDQLKkakeeaqvIIEQANKRRTQILDEAKTEA-DNeRTRIVAQAQAEIDAER 113
                 9********************9**********98866666665554444552222333444455555555555.4414555566666655554 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.3      0.35   6.9e+02      16      29 ..      67      80 ..      45      80 .. 0.65
   2 ?    3.6   0.5     0.039        78      17      31 ..      68      82 ..      62      91 .. 0.89
   3 ?   12.9   1.1   4.9e-05     0.098      17      41 ..      94     118 ..      92     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.35
                     EHHHHTTSEEE-SS CS
  RNA_pol_Rpb2_45 16 tAdeEekyviAqAn 29
                      A+eE + +i qAn
       EHT98830.1 67 KAKEEAQVIIEQAN 80
                     36666666666665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.039
                     HHHHTTSEEE-SSS- CS
  RNA_pol_Rpb2_45 17 AdeEekyviAqAnap 31
                     A+eE + +i qAn+ 
       EHT98830.1 68 AKEEAQVIIEQANKR 82
                     99***********75 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 4.9e-05
                      HHHHTTSEEE-SSS-BETTSCBSSS CS
  RNA_pol_Rpb2_45  17 AdeEekyviAqAnapldeegrfvee 41 
                      Ad+E   ++AqA+a++d+e + ++e
       EHT98830.1  94 ADNERTRIVAQAQAEIDAERKRARE 118
                      9****************99876654 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  24.3    0.0002       0.4       3      91 ..      37     124 ..      35     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                   XXHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH CS
  V-ATPase_G_2   3 ssrllkeLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearl 91 
                   ++ + + La+ E++ ++ l  A+ +a  ++++A+ eA+ i+++A+++  ++ +e + e ++e +ri ++a+a+ +ae +++r++  +++
    EHT98830.1  37 QKEIAEGLASAERA-KKDLYLAQANATDQLKKAKEEAQVIIEQANKRRTQILDEAKTEADNERTRIVAQAQAEIDAERKRAREELRKQV 124
                   67788889999998.667899**************************999988777777666666666555555555555555444433 PP

>> CRISPR_Cse1  CRISPR-associated protein Cse1 (CRISPR_cse1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.4    0.0011       2.2     365     451 ..      33     128 ..      21     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                  CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSHH.......HHHHHHHHHHHHHHHHHHHHHHHCCCCCS...HCTHHHHHHHHHHHHH CS
  CRISPR_Cse1 365 kealreaveeaveaaeevaralrsavkaaakellkkgkkka.......gdasaaraafwaalegpfrellaalgpddd..aaealkawrktlrraa 451
                   e++++ + e+++ ae++ + l  a  +a ++l+k +++++       + + ++ +++  +++++  +++a+ +++ d  +++a+++ rk+++ +a
   EHT98830.1  33 IEKRQKEIAEGLASAERAKKDLYLAQANATDQLKKAKEEAQviieqanKRRTQILDEAKTEADNERTRIVAQAQAEIDaeRKRAREELRKQVALLA 128
                  4678889*******************999999999998888***7777777777777777788888888999999988877778888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2709  (0.151096); expected 358.6 (0.02)
Passed bias filter:                      884  (0.0493056); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 1261.35
//
Query:       EHT98831.1  [L=177]
Description: F1 sector of membrane-bound ATP synthase, delta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-49  167.9   0.7    2.5e-49  167.7   0.7    1.0  1  OSCP      ATP synthase delta (OSCP) subunit


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.7   1.4e-53   2.5e-49       1     171 [.       7     174 ..       7     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 1.4e-53
        OSCP   1 iarrYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfkeklseavknflkllaenkRlalLpeiaeefeellaea 99 
                 +ar+YAkA+f++A e++++e+++++l  + a +a+++++a+lls  a+  e +++ ++++++++l+e  +n++k++aen+Rl+ Lp+++++f +l +++
  EHT98831.1   7 VARPYAKAAFDFAVEHQSIERWQKMLAFA-AEVAANEQMADLLSG-ALAPEALAASFNAVCGDQLDEPAQNLIKVMAENGRLTALPAVLAQFIQLRDAY 103
                 89************************999.9**********9965.888999*********************************************** PP

        OSCP 100 rgiveaeVtsavpLtdeqlekleaalakklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeq 171
                 + ++e++V+sa  L+d+ql+k++aa++k+l++ kvkl++k+d+s+++Gv+++ gd viDgSv+g+L++l++ 
  EHT98831.1 104 EATAEVDVISASTLSDDQLTKISAAMEKRLSR-KVKLNCKIDKSVMAGVIIRSGDLVIDGSVRGRLDRLADV 174
                 ********************************.7***********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1334.73
//
Query:       EHT98832.1  [L=513]
Description: F1 sector of membrane-bound ATP synthase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-72  243.2   0.1    3.5e-72  242.5   0.1    1.3  1  ATP-synt_ab     ATP synthase alpha/beta family, nucleotide-bi
    1.7e-44  151.1   2.1    2.8e-44  150.5   1.8    1.5  2  ATP-synt_ab_C   ATP synthase alpha/beta chain, C terminal dom
    7.8e-14   52.0   0.2    1.8e-13   50.8   0.2    1.6  1  ATP-synt_ab_N   ATP synthase alpha/beta family, beta-barrel d
    8.5e-05   22.0   0.1    0.00015   21.2   0.1    1.4  1  ATPase          KaiC
    0.00045   20.3   0.3     0.0017   18.5   0.1    2.1  2  HAS-barrel      HAS barrel domain
  ------ inclusion threshold ------
      0.074   13.0   0.0       0.14   12.1   0.0    1.4  1  ATPase_2        ATPase domain predominantly from Archaea
       0.13   12.3   0.0        6.9    6.8   0.0    2.9  3  Viral_cys_rich  Viral cysteine rich


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.5   0.1   1.4e-75   3.5e-72       1     213 []     149     375 ..     149     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 242.5 bits;  conditional E-value: 1.4e-75
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  G + +Da++pi++Gqr+li+g++++Gkt+++ +++++q +s  +++yv+iG++++++++v+++++e++++++t++v+++++e++a++++++y+g++++
   EHT98832.1 149 GYKSVDAMIPIGRGQRELIIGDRQTGKTAMAiDAIINQRDSGITCVYVAIGQKASTISNVVRKLEEHGALSNTIVVVASASESAALQYLAPYAGCAMG 246
                  7899**************************99******87767******************************************************* PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE.............TSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka.............pdrtGsvtivaavspaggDfsdpvtta 182
                  Eyfrd+g+++l+++d+ls++a A+r+isl+l+++p+++++p+++++ +++l+ERa ++             + +tGs+t+++++++++gD+s+ v+t+
   EHT98832.1 247 EYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERASRVsadyverftngevKGQTGSLTALPIIETQAGDVSAFVPTN 344
                  **********************************************************8888888877777677************************ PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  +++itdg+i+L+++l++++++Pa+n+++SvS
   EHT98832.1 345 VISITDGQIFLESNLFNSGIRPAVNPGISVS 375
                  *****************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.6   1.4e+04      46      56 ..       8      18 ..       6      40 .. 0.57
   2 !  150.5   1.8   1.1e-47   2.8e-44       1     126 []     382     507 ..     382     507 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.6
  ATP-synt_ab_C 46 lvelLkQkqys 56
                   + el+kQ   +
     EHT98832.1  8 ISELIKQRIAQ 18
                   45666664322 PP

  == domain 2  score: 150.5 bits;  conditional E-value: 1.1e-47
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Qtk++kk++g ++++laqYrEl+aF+qF+sdLD+at+kqL++G++++elLkQkqy+p+sv++q ++l+aa++g+l+d++++k+ +fe++ll+++++
     EHT98832.1 382 QTKIIKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLSHGQKVTELLKQKQYAPMSVAQQGLVLFAAERGYLNDVELAKIGSFEAALLAFADR 477
                    9*********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaikef 126
                    +++e+++ei++++++++++eeklk ++++f
     EHT98832.1 478 DHAELMAEINQSGNFNNDIEEKLKGLLETF 507
                    ************************998876 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.2   7.2e-17   1.8e-13       6      69 .]      29      92 ..      26      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 7.2e-17
                   TTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  6 GpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   G++v+v +gi r++g+ +++++e+   +  +++ alnl+ d+V+++vmg++  l +G++Vk TG
     EHT98832.1 29 GTIVSVSDGIIRVHGLADVMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTG 92
                   9**************************************************************9 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   5.8e-08   0.00015       1      70 [.     146     212 ..     146     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.8e-08
      ATPase   1 vktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenaksl 70 
                 v+tg +  D ++   i +g+  li G+  tGKt +a   +i++  + g  +v+v++ ++a+ + + +++l
  EHT98832.1 146 VQTGYKSVDAMI--PIGRGQRELIIGDRQTGKTAMAIDAIINQRDS-GITCVYVAIGQKASTISNVVRKL 212
                 578888888888..57789999*********************666.*************8888777766 PP

>> HAS-barrel  HAS barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   6.6e-07    0.0017       8      84 ..      31      88 ..      26     112 .. 0.80
   2 ?   -2.2   0.0       1.8   4.7e+03      54      76 ..     203     225 ..     184     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.6e-07
  HAS-barrel  8 sts.sslifrvegskdvkvGeyVeielpdgeivlGmvtdirrgnselsndlalvlsleeleeangddevalatedt.......gv 84
                  s s++i+rv+g++dv+ Ge+++ +++    ++ + ++++r                       d+++a++ +++        v
  EHT98832.1 31 IVSvSDGIIRVHGLADVMQGEMISLPGN----RYAIALNLER-----------------------DSVGAVVMGPYadlaegmKV 88
                5555**********************66....99999*****.......................99999988888777776633 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
  HAS-barrel  54 sndlalvlsleeleeangddeva 76 
                 s++ + v+ lee+++  + ++v+
  EHT98832.1 203 STISNVVRKLEEHGALSNTIVVV 225
                 55555666778777777776665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.4e-05      0.14      24     128 ..     166     264 ..     151     278 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
    ATPase_2  24 fiYGpegsGKtaLlkeiienledkdkyviyyialre.esiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkgkkii 121
                 +i G ++ GKta+   +i n++d++   +y+   ++ + is++ +++ee+   ++   ++++a ++a+l       + l+  a  ++ e  +++g    
  EHT98832.1 166 LIIGDRQTGKTAMAIDAIINQRDSGITCVYVAIGQKaSTISNVVRKLEEHGALSNTIVVVASASESAAL-------QYLAPYAGCAMGEYFRDRGEDAL 257
                 799**********999999999********987776156899999977666655555555555555555.......23344444444444455555555 PP

    ATPase_2 122 iiiDelq 128
                 i+ D+l 
  EHT98832.1 258 IVYDDLS 264
                 6666655 PP

>> Viral_cys_rich  Viral cysteine rich
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.44   1.1e+03      63      78 ..       2      17 ..       1      22 [. 0.83
   2 ?    6.8   0.0    0.0027       6.9      34      73 ..     383     422 ..     375     425 .. 0.89
   3 ?    4.8   0.0     0.012        30      22      73 ..     413     465 ..     411     470 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.44
  Viral_cys_rich 63 qlnetnlaeLsdlYik 78
                    qln t+++eL ++ i+
      EHT98832.1  2 QLNSTEISELIKQRIA 17
                    9*********988776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0027
  Viral_cys_rich  34 eficdrllgGicaPLsvinnatLyaeLskqlnetnlaeLs 73 
                       i+++l gGi + L + + +  + + + +l++    +Ls
      EHT98832.1 383 TKIIKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLS 422
                     67999***************************99877776 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.012
  Viral_cys_rich  22 ledrtlvqfGrkeficdrllgGicaPLsvinn.atLyaeLskqlnetnlaeLs 73 
                     l+d t  q+   + + + l +  +aP+sv +  + L+a     ln+ +la++ 
      EHT98832.1 413 LDDATRKQLSHGQKVTELLKQKQYAPMSVAQQgLVLFAAERGYLNDVELAKIG 465
                     789999999999****************997537899999999****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3927.45
//
Query:       EHT98833.1  [L=288]
Description: F1 sector of membrane-bound ATP synthase, gamma subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-96  322.5   0.0    3.2e-96  322.3   0.0    1.0  1  ATP-synt  ATP synthase


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.3   0.0  1.8e-100   3.2e-96       3     278 ..       5     287 ..       3     288 .] 0.95

  Alignments for each domain:
  == domain 1  score: 322.3 bits;  conditional E-value: 1.8e-100
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S..SSEEEEEEE--SSSSSTTHHHHHHHHHHHHH CS
    ATP-synt   3 keikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllkee.ekkvllivitSDrGLcGgfNsnvikkaekli 100
                 kei+++i svk+t+kItkAm+mVaa+k+rk+qe++ a+rpya+++++v+ +la  + e khp+l+e+ +k+v+++v+++DrGLcGg+N n++kk+ + +
  EHT98833.1   5 KEIRTKIGSVKNTQKITKAMEMVAASKMRKTQERMAASRPYADTMRKVIGHLALGNLEYKHPYLDERdVKRVGYLVVSTDRGLCGGLNVNLFKKLLAEM 103
                 9***************************************************999999*****99966***************************5555 PP

                 HHHHTTT.ETEEEEESHHHHHHH.HHSS.EHHTTCE-TSS--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HC....S. CS
    ATP-synt 101 eelkkeg.evklvvvGkkgreyf.krkvevqleftgvskkptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeee....kk 193
                 ++++++g +++l +vG+kg ++f   + +v++++tg+++kp +++    ++ +l++y+eg+id+++iv nkf++++sq+pt+ +llpl + e     k+
  EHT98833.1 104 KAWSDKGvQSDLAIVGSKGVSFFgAVGGNVVAQVTGMGDKPALSDLIGPVKVMLQAYDEGRIDKLYIVNNKFNNTMSQTPTITQLLPLPPAEGeeemKA 202
                 6678899899*************999*************************************************************655444666799 PP

                 .SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ATP-synt 194 ekseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeA 278
                 ++++y +epd++++l++ll++y++s++y+ ++e++asEqaaRm+aM++At+n ++li++l+l yN+aRQa+ITqEL+eIvsGa+A
  EHT98833.1 203 KTWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGNLIKELQLVYNKARQASITQELTEIVSGASA 287
                 ************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1995.40
//
Query:       EHT98834.1  [L=465]
Description: F1 sector of membrane-bound ATP synthase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-63  214.5   0.0    1.7e-63  214.1   0.0    1.2  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    1.1e-19   70.7   2.2    2.4e-19   69.6   2.2    1.6  1  ATP-synt_ab_N    ATP synthase alpha/beta family, beta-barrel 
  ------ inclusion threshold ------
      0.014   15.3   0.5      0.083   12.8   0.5    2.2  1  T3SS_ATPase_C    T3SS EscN ATPase C-terminal domain
       0.14   11.1   0.1       0.26   10.1   0.1    1.4  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.15   12.0   0.0       0.34   10.8   0.0    1.6  1  Erythro-docking  Erythronolide synthase, docking
        0.2   12.1   0.0       0.35   11.3   0.0    1.4  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   0.0   5.8e-67   1.7e-63       1     213 []     135     347 ..     135     347 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 5.8e-67
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitl 96 
                  Gi+v+D+++p+++G++++++g++gvGktv + +l+++  ++ + +++++g+Ger++e +++++e++++++++++ lv+ ++nep+  r+++++tg+t+
   EHT98834.1 135 GIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAAEhSgYSVFAGVGERTREGNDFYHEMTDSNVIDKVALVYGQMNEPPGNRLRVALTGLTM 232
                  99***************************998888887666347****************************************************** PP

                  HHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  97 AEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivLd 194
                  AE frd+g++vll++d++ r++ A  e+s++lg+mp++ gy+++l+ ++  l+ER++++  +tGs+t+v+av+++++D++dp + +t++++d+++ L+
   EHT98834.1 233 AEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITST--KTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVTLS 328
                  ***********************************************************..99*********************************** PP

                  HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 195 kklaqrkhfPainvlvSvS 213
                  +++a+ +++Pa+++l S+S
   EHT98834.1 329 RQIASLGIYPAVDPLDSTS 347
                  *****************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   2.2   7.9e-23   2.4e-19       1      68 [.       6      72 ..       6      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 7.9e-23
                   EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEE CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrT 68
                   ivq+iG+vvdvef+++++p+ y alev+  +  +l+l+v+++lg+++Vr+i+mg  dGl+rG eV ++
     EHT98834.1  6 IVQIIGAVVDVEFPQDAVPQVYSALEVKNGD-ARLVLEVQQQLGGGVVRTIAMGTSDGLKRGLEVADL 72
                   89**************************776.*********************************886 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   2.8e-05     0.083       2      28 ..     356     382 ..     355     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLini 28 
                     +eh++ ar +  ll++yqe +d+i i
     EHT98834.1 356 GQEHYDVARGVQSLLQRYQELKDIIAI 382
                    68***********************98 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   8.9e-05      0.26      18      56 ..     151     189 ..     146     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.9e-05
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdraivlDltGafv 56 
                    + ++G++G GKt+ + +l+r+i a      v+   G+ +
     EHT98834.1 151 VGLFGGAGVGKTVNMMELIRNIAAEHSGYSVFAGVGERT 189
                    6799******************99988777776666655 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.34      10      43 ..     341     374 ..     337     378 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                      HHHHHHHHHHHHHTTSS-THHHHHHHHHHHHHHH CS
  Erythro-docking  10 dRLDeLekaLeaLsdedGhdDvGaRLeaLLRRWn 43 
                      d LD   + L+ L   + h Dv   + +LL R++
       EHT98834.1 341 DPLDSTSRQLDPLVVGQEHYDVARGVQSLLQRYQ 374
                      569999**************************98 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.35       3      45 ..     153     206 ..     151     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl...........klkkkdsvysrnpeddfwd 45 
                   l+G +g+GK++ + eL+++++ +             + + +++y   +++++ d
    EHT98834.1 153 LFGGAGVGKTVNMMELIRNIAAEHsgysvfagvgeRTREGNDFYHEMTDSNVID 206
                   79*******************766577777777766666677777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3355.23
//
Query:       EHT98835.1  [L=139]
Description: F1 sector of membrane-bound ATP synthase, epsilon subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-28   97.3   0.0    5.2e-28   96.8   0.0    1.2  1  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi
    4.8e-14   52.3   4.6    7.6e-14   51.7   4.6    1.3  1  ATP-synt_DE    ATP synthase, Delta/Epsilon chain, long alpha-


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   5.9e-32   5.2e-28       2      80 .]       6      84 ..       5      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 5.9e-32
                   EEEEEESSSEEEEEEEEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEEGGGEEEEEEESSEEEEEETTEEEEEESSS CS
  ATP-synt_DE_N  2 kleivtpervvfsgeveevvaptteGelgilpgHaplitaLkpgelriktedgeeesiavsgGflevqdnkvtiladta 80
                   +l++v++e ++fs  v+++++ ++eGelgi pgHapl+ta+kpg++ri +++geee+i++sgG+levq+ + t+ladta
     EHT98835.1  6 HLDVVSAESQLFSSLVQKIQVSGSEGELGIFPGHAPLLTAIKPGMIRIVKQHGEEEFIYLSGGVLEVQPGSTTVLADTA 84
                   89***************************************************************************98 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   4.6   8.5e-18   7.6e-14       2      47 .]      89     133 ..      88     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 8.5e-18
                  C--HHHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHTT CS
  ATP-synt_DE   2 dIDverAeeAkerAeerLeeasddnidyarAqaaLrRAlaRlqvak 47 
                  d+D++rA eAk++Aee+++ + + ++dya+A a+L++A+a l+v++
   EHT98835.1  89 DLDEARALEAKRKAEEHMNSS-HGDVDYAQASAELAKAIAKLRVIE 133
                  89*******************.666*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1077.96
//
Query:       EHT98836.1  [L=456]
Description: N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-23   79.1  12.5    2.7e-06   26.8   3.5    5.1  5  Hexapep          Bacterial transferase hexapeptide (six repea
    1.2e-22   81.0   0.3    2.3e-22   80.1   0.3    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
    1.5e-12   47.6   0.0    2.4e-12   47.0   0.0    1.3  1  NTP_transferase  Nucleotidyl transferase
    2.9e-07   30.5   0.1    5.7e-07   29.5   0.1    1.5  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
    5.1e-06   26.1  17.4     0.0025   17.5   0.1    4.3  5  Hexapep_2        Hexapeptide repeat of succinyl-transferase
    0.00041   20.4   0.0      0.071   13.0   0.0    2.4  2  CTP_transf_3     Cytidylyltransferase
     0.0012   17.9   0.1      0.034   13.1   0.2    2.5  3  Fucokinase       L-fucokinase
     0.0091   15.2   0.0      0.015   14.5   0.0    1.3  1  CofC             Guanylyl transferase CofC like
  ------ inclusion threshold ------
       0.11   12.8   2.5       0.25   11.6   0.1    2.5  2  Bactofilin       Polymer-forming cytoskeletal


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   3.5   1.4e-09   2.7e-06       3      36 .]     267     300 ..     265     300 .. 0.94
   2 !   13.8   0.0   1.8e-05     0.036       1      35 [.     300     333 ..     300     340 .. 0.89
   3 !    8.0   0.0    0.0012       2.4       7      33 ..     323     349 ..     317     352 .. 0.86
   4 !   15.8   0.1   4.3e-06    0.0085       2      32 ..     353     382 ..     352     385 .. 0.92
   5 !   24.9   0.2   5.5e-09   1.1e-05       2      34 ..     395     427 ..     394     429 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.4e-09
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 + G +v I+ +++i g V++G++vkIgag+vi++
  EHT98836.1 267 QHGRDVEIDVNVIIEGQVTLGNRVKIGAGCVIKN 300
                 679*****************************85 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.8e-05
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++vI +++ I p++vi +++ +  ++++g++++++
  EHT98836.1 300 NSVISDDCEISPYSVI-EDANLATDCTVGPFARLR 333
                 589*********9999.999999999999999875 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0012
                 TEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   7 nvlIgpfaviggnVkIGdnvkIgagvv 33 
                 ++++gpfa ++++ ++   +++g++v 
  EHT98836.1 323 DCTVGPFARLRPGSELAQAAHVGNFVE 349
                 799999999999999999999999886 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 4.3e-06
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32 
                 +++G++++ g+ +++ g+++IG nv Igag+
  EHT98836.1 353 ARLGKGSKAGHLSYL-GDAEIGANVNIGAGT 382
                 57899**********.*************97 PP

  == domain 5  score: 24.9 bits;  conditional E-value: 5.5e-09
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 tvIG+nv++g+ +++ ++V +  +++I+ag+++
  EHT98836.1 395 TVIGDNVFVGSDTQLVAPVSVAAGATIAAGTTV 427
                 8******************************98 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.3   1.1e-25   2.3e-22       1     113 [.       8     123 ..       8     150 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.1e-25
                   EEEEEESS-TTTTT..THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEE CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallplggkpllervldalraagvdevvvvggd..eevlaalarlgvrvvededpgkgplaslaaalraaadadavlvla 93 
                   +viLA+G+++Rm +  +K l  l+gkp++++v+da++ +g+++v +v g+  ++++a l ++ v +v ++ ++ g++++++ a+ + ad++ +++l 
    EHT98836.1   8 VVILAAGKGTRMYSdlPKVLHTLAGKPMVQHVIDAAKGLGAQQVHLVYGHggDQLKATLTDSAVNWVLQA-EQLGTGHAMQQAAPHFADDEDIMMLY 103
                   69**********9999*******************************988889****************8.59*************99********* PP

                   TT-TT--HHHHHHHHHCHHH CS
  NTP_transf_3  94 cDmPlltpelverllaaaaa 113
                   +D+Pl+++e+++rl++a  +
    EHT98836.1 104 GDVPLISEETLQRLRDAKPE 123
                   ***************98543 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.2e-15   2.4e-12       3     217 ..       9     211 ..       7     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.2e-15
                      EEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHHH CS
  NTP_transferase   3 vILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaael 96 
                      vILa G+GtR++    +  +k ++ l +++++q+++ ++   g +++ +v   +    ++  l++ +     v+ +l+ e+ gt +A+ +aa  
       EHT98836.1   9 VILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAAKGLGAQQVHLVYG-HGGDQLKATLTDSA-----VNWVLQAEQLGTGHAMQQAAPH 92 
                      9**********8....5677777777777*****************666666.66777777777775.....899******************* PP

                      HTTSSE..EEEEETTEE.EESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSH...CSEECCSEEEEETTH CS
  NTP_transferase  97 ledeksdelvlvLggDh.likdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeaka...selassGiYvfnsev 186
                      ++d+++   +++L gD+ li+   ee++++ ++++ +g + +++v  +++t+yG i +++ g++  ++E  ++ +a    + +++Gi + n + 
       EHT98836.1  93 FADDED---IMMLYGDVpLIS---EETLQRLRDAKPEGGIGLLTVVLDNPTGYGRIVREN-GTIVGIIEQKDASPAqlaINEINTGILIANGGD 179
                      **9997...788888873666...5555555555555557777777899********998.566666666555555567999************ PP

                      HHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEE CS
  NTP_transferase 187 llflak.dleelkrgedeitdilpkaleegkv 217
                      l+  ++   ++ ++ge  itdi+  a +eg+v
       EHT98836.1 180 LKRWLAkLTNNNAQGEYYITDIIALAHQEGRV 211
                      *9999989999*************99999876 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   2.9e-10   5.7e-07       1      50 [.       6      55 ..       6      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.9e-10
                EEEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEE CS
        IspD  1 vvvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvv 50
                + vvi AAG+G+Rm ++lpK + +l+g+++++h +da+ + +a +  +v 
  EHT98836.1  6 MSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAAKGLGAQQVHLVY 55
                579**********************************9886554433333 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   2.8   0.00013      0.26      12      32 ..     276     298 ..     269     300 .. 0.86
   2 ?   -1.5   0.1       1.1   2.3e+03       7      27 ..     306     327 ..     302     328 .. 0.49
   3 ?   -2.4   0.0       2.1   4.2e+03       7      14 ..     323     330 ..     322     330 .. 0.77
   4 !    5.8   0.7    0.0059        12       4      15 ..     372     383 ..     370     389 .. 0.86
   5 !   17.5   0.1   1.3e-06    0.0025       2      32 ..     395     427 ..     394     429 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                 TT-EE.S.EEE-TT-EE-TT-EE CS
   Hexapep_2  12 anagi.G.vslGdncvvgaGvvi 32 
                 +n +i G v+lG+++++gaG+vi
  EHT98836.1 276 VNVIIeGqVTLGNRVKIGAGCVI 298
                 68898899**************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 T-EE-TT-EE.SEEE-TT-EE- CS
   Hexapep_2   7 nCliGanagi.GvslGdncvvg 27 
                 +C i + ++i   +l  +c+vg
  EHT98836.1 306 DCEISPYSVIeDANLATDCTVG 327
                 4444444444455555566665 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.1
                 T-EE-TT- CS
   Hexapep_2   7 nCliGana 14 
                 +C +G++a
  EHT98836.1 323 DCTVGPFA 330
                 78888876 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0059
                 E-TT-EE-TT-E CS
   Hexapep_2   4 IGdnCliGanag 15 
                 IG+n++iGa  +
  EHT98836.1 372 IGANVNIGAGTI 383
                 9*******9876 PP

  == domain 5  score: 17.5 bits;  conditional E-value: 1.3e-06
                 EEE-TT-EE-TT-E.E.SEEE-TT-EE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanag.i.GvslGdncvvgaGvvi 32 
                 + IGdn+++G++   + +vs+  +++++aG ++
  EHT98836.1 395 TVIGDNVFVGSDTQlVaPVSVAAGATIAAGTTV 427
                 68************768*************987 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.6e-05     0.071      16      39 ..      25      48 ..       8      55 .. 0.86
   2 ?    4.7   0.0     0.013        25      89     111 ..      95     117 ..      71     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                  GGGSEETTEEHHHHHHHHHHHTTT CS
  CTP_transf_3 16 Knlldlggkpliayvleaalkska 39
                  K+l  l+gkp++++v++aa+  +a
    EHT98836.1 25 KVLHTLAGKPMVQHVIDAAKGLGA 48
                  9******************87666 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.013
                   TTSEEEEE-TT-TT--HHHHHHH CS
  CTP_transf_3  89 neeiivnlqGdnPllqeevikka 111
                   ++e i+ l+Gd Pl++ee+++++
    EHT98836.1  95 DDEDIMMLYGDVPLISEETLQRL 117
                   4567899*************986 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.23   4.6e+02      46     131 ..     166     256 ..     152     285 .. 0.74
   2 !   13.1   0.2   1.7e-05     0.034     269     305 ..     291     327 ..     267     333 .. 0.69
   3 ?    0.5   0.0      0.12   2.3e+02     281     330 ..     355     403 ..     346     410 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
  Fucokinase  46 krmkpGvlvtssDvll.....lf.dseeisfdkagvtalavpstldigtnHGVfvlddqsseeeeleirsvkkflhKpseeelqasgavlkd 131
                 ++++ G+l++++ +l      l  ++++ +   ++++ala+++   i + H    ++ +   ++ l++ + ++ +++  +e+l   g++l+d
  EHT98836.1 166 NEINTGILIANGGDLKrwlakLTnNNAQGEYYITDIIALAHQEGRVINAVHPARNSETD-GVNNRLQLATLERTYQQEQAEKLLLAGVMLRD 256
                 46789999999999995533321333444444449999***999999999988888888.66668999999999999999998877777766 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.7e-05
  Fucokinase 269 kkkesavvinSvlessvsvgegsviehsslkgnvsig 305
                 k+ +++v+ nSv++ ++++++ svie+ +l  ++++g
  EHT98836.1 291 KIGAGCVIKNSVISDDCEISPYSVIEDANLATDCTVG 327
                 2256677777777777777777777777777777776 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.12
  Fucokinase 281 lessvsvgegsviehsslkgnvsigsnsivsglelesseeslelpddtil 330
                 l ++ + g  s++ + ++++nv+ig+++i  + + +++ +   + d++++
  EHT98836.1 355 LGKGSKAGHLSYLGDAEIGANVNIGAGTITCNYDGANKFK-TVIGDNVFV 403
                 6677788888999999*************98888887765.777777775 PP

>> CofC  Guanylyl transferase CofC like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.7e-06     0.015      31     112 ..      33     120 ..      15     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.7e-06
        CofC  31 kamlldvidalkrld....vlvvsedeevleyaldelgve.vvkekekdlntaveka...feeieekeviiipsdiPlikkedvkdllel 112
                 k m++ vida+k+l      lv ++  + l+  l    v+ v++ ++ +   a+++a   f   ++++++++  d+Pli++e++++l + 
  EHT98836.1  33 KPMVQHVIDAAKGLGaqqvHLVYGHGGDQLKATLTDSAVNwVLQAEQLGTGHAMQQAaphF--ADDEDIMMLYGDVPLISEETLQRLRDA 120
                 6799999999999643343478899999999988887777255556788999****97544..49999*****************99765 PP

>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00013      0.25       8      54 ..     261     309 ..     257     330 .. 0.89
   2 ?   -0.3   0.5      0.68   1.4e+03      61      84 ..     412     435 ..     356     443 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
  Bactofilin   8 kikGelevegdlridGkv..eGdieakgklvvgeggkvegnikaeevvv 54 
                  ++G+l+   d++id +v  eG+++ ++++++g g +++ ++ +++ ++
  EHT98836.1 261 DLRGTLQHGRDVEIDVNViiEGQVTLGNRVKIGAGCVIKNSVISDDCEI 309
                 67899999999999996557*********************99998887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.68
  Bactofilin  61 nveaeekvelkktakveGdikaks 84 
                  v + +  ++++ ++v  di+++ 
  EHT98836.1 412 PVSVAAGATIAAGTTVMKDISTAD 435
                 344444455555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3562.80
//
Query:       EHT98837.1  [L=609]
Description: L-glutamine:D-fructose-6-phosphate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-63  211.2   0.3    6.1e-33  113.5   0.3    2.3  2  SIS       SIS domain
    2.7e-22   79.4   0.1    5.1e-22   78.5   0.1    1.4  1  GATase_6  Glutamine amidotransferase domain
    1.2e-16   60.7   0.0    2.5e-16   59.7   0.0    1.5  1  GATase_7  Glutamine amidotransferase domain
    0.00022   20.2   0.1    0.00064   18.7   0.0    1.7  2  GATase_4  Glutamine amidotransferases class-II
  ------ inclusion threshold ------
      0.076   13.3   0.0         13    6.2   0.0    2.7  2  DUF3677   Protein of unknown function (DUF3677)


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.3   1.7e-36   6.1e-33       1     130 [.     289     418 ..     289     419 .. 0.97
   2 !   95.8   0.0     5e-31   1.8e-27       2     130 ..     462     591 ..     461     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.7e-36
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTT.SEEEEEESSTTSHHHHHS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakerg.akiiaITdskgsplarea 98 
                 lL+k ++i ++++Gtsy++++ +++++e +++ +++ve ase++++ ++ ++++ l+i +s+sget+d++aa++l ke g    +aI++ +gs+l+re+
  EHT98837.1 289 LLSKVEHIQIIACGTSYNSGMVSRYWFEALANLPCDVEIASEFRYR-KSAVRKNSLLITLSQSGETADTLAALRLSKELGyLGSLAICNVAGSSLVRES 386
                 5999******************************************.*********************************6667*************** PP

                 SEEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS  99 dlalyinaepetlvastksltaqlaaldalav 130
                 dlal++ a+ e++vastk++t+ql++l +l++
  EHT98837.1 387 DLALMTKAGTEIGVASTKAFTTQLTVLLMLVA 418
                 *****************************986 PP

  == domain 2  score: 95.8 bits;  conditional E-value: 5e-31
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaae.lakergakiiaITdskgsplaread 99 
                 ++++++ ++lG+G +y+ia+e+alkl+ei++i++e+++a+elkhg+lalid d++vi++++++e  ++++++  ++++rg+ + +++d+++     e  
  EHT98837.1 462 FSDKHHALFLGRGDQYPIAMEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIeEVRARGGLLYVFADQDAGFSDSEGM 560
                 68999*****************************************************************9999************************7 PP

                 EEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepetlvastksltaqlaaldalav 130
                  ++ ++ ++e+++++++++++ql++++++++
  EHT98837.1 561 KIIPLPHVEEAIAPIFYTVPLQLLSYHVALI 591
                 77777777777****************9987 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.1   1.4e-25   5.1e-22      12     125 ..      66     184 ..      44     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.4e-25
    GATase_6  12 devalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall...eelG.......eevlerlrGmfafai 100
                 +++++aH+R+a++g++ e+ a+P    ++++++vhNG i+n++ lre+l a +g++f s++Dtev+++l+   ++ G       ++v+ +lrG++ ++i
  EHT98837.1  66 GGTGIAHTRWATHGEPSEANAHPH--VSEHIVIVHNGIIENHEPLREALIA-QGYHFSSETDTEVVAHLVhleQKKGgslrevvQRVIPQLRGAYGMVI 161
                 569*************66666***..*************************.****************888996666688777788889********** PP

    GATase_6 101 wdk.rentlilardrlgvkplyyavd 125
                 +d+ ++++l+ a  r g +pl+++  
  EHT98837.1 162 MDSrDPSCLVAA--RSG-SPLVIGRG 184
                 ***777777776..666.78877665 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   6.9e-20   2.5e-16       8     120 ..      81     196 ..      72     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 6.9e-20
    GATase_7   8 dseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea.........ewgeealerlnGmfAfaiwdeeek.rlllaRDr 96 
                  sea+a P v   ++++viv+nG i N++ lre L a+g++f++++Dtev+++l++          e +++++ +l+G + ++i+d+++   l++aR  
  EHT98837.1  81 PSEANAHPHV---SEHIVIVHNGIIENHEPLREALIAQGYHFSSETDTEVVAHLVHLeqkkggslrEVVQRVIPQLRGAYGMVIMDSRDPsCLVAARS- 175
                 5677788888...478**************************************98899***************************888736777777. PP

    GATase_7  97 lGikPLyygedkgdallfaSelka 120
                     PL +g+  g+++ +aS   a
  EHT98837.1 176 --GSPLVIGRGVGENF-IASDQLA 196
                 ..58999999987555.4554444 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.8e-07   0.00064      65     133 ..      60     128 ..      51     179 .. 0.77
   2 ?   -3.0   0.0      0.73   2.6e+03     152     183 ..     523     554 ..     517     563 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.8e-07
    GATase_4  65 reypiksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl....egrfePvGsTDsEla 133
                  e+p++    +aH R at+Ge +++n+hp v     +++++ HnG +++ +p +    ++ ++   +TD+E++
  EHT98837.1  60 EEQPLNGGTGIAHTRWATHGEPSEANAHPHVS----EHIVIVHNGIIENHEPLRealiAQGYHFSSETDTEVV 128
                 5677888889*******************875....589********99777665557788999999999976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.73
    GATase_4 152 aeeleralaelakeiaelGvfnlllsdgralf 183
                  +el + l+  ++e+ ++G + ++++d +a f
  EHT98837.1 523 NNELLEKLKSNIEEVRARGGLLYVFADQDAGF 554
                 56788889999999999999999999988766 PP

>> DUF3677  Protein of unknown function (DUF3677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        56      48      72 ..     119     143 ..     105     153 .. 0.74
   2 ?    6.2   0.0    0.0035        13       5      64 ..     374     441 ..     372     459 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
     DUF3677  48 tqssekdsevlsrLlklr.lKtkali 72 
                   sse d+ev+++L+ l+  K   l+
  EHT98837.1 119 F-SSETDTEVVAHLVHLEqKKGGSLR 143
                 4.89*************746655555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0035
     DUF3677   5 lssaagipevr.....llaasrleiwlqnpK.LsreaqeLLlslcv..ncntqssekdsevlsrLlkl 64 
                 ++ +ag++ vr     l+ +  +ei +++ K ++ ++  LL+ ++   + n+ s+ek++e++ +L +l
  EHT98837.1 374 ICNVAGSSLVResdlaLMTKAGTEIGVASTKaFTTQLTVLLMLVAKlgRLNGMSAEKEHEIVHGLQAL 441
                 78999**********9***************9999999999987643377999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4481.51
//
Query:       EHT98838.1  [L=65]
Description: hypothetical protein CKS_1202 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 522.52
//
Query:       EHT98839.1  [L=347]
Description: periplasmic substrate-binding component of an ABC superfamily phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-57  194.7   9.5    3.3e-57  194.3   9.5    1.1  1  PBP_like_2  PBP superfamily domain
    3.1e-12   46.0   0.0      7e-12   44.9   0.0    1.6  1  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.3   9.5   3.6e-61   3.3e-57       8     281 ..      25     308 ..      19     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 194.3 bits;  conditional E-value: 3.6e-61
  PBP_like_2   8 svgeifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplteseiaagwaangaggliqvpvaigaialvvnkd.... 102
                 +++ ++gaG t+pap++ k+a  +++a +g k+ny++ GS++g k++ +++vdf++sd+p++++++ +      + gl+q+p +ig+++l+vn +    
  EHT98839.1  25 AATDLTGAGGTFPAPVYAKWAAEYQQA-TGSKINYQGIGSSGGVKQIIAKTVDFGASDAPMKDEDL-Q------KYGLFQFPTVIGGVVLAVNLPgiks 115
                 44459****************889999.8***********************************88.4......356888*************998999 PP

  PBP_like_2 103 nplnlsreaLakIfsgkItnWnd........vlglpadgpIkvvhrsdgsgttflfstalaeq...............gpwtasgigasgsegvasavs 178
                 + l+l+ +++ +I+ g+I++Wnd        +++lp d++I vv+r dgsgt f+f+++la++               +p++   +g +g++gva  v+
  EHT98839.1 116 GQLTLDGKTVGDIYLGNIKKWNDpaivklnpGVKLP-DTNINVVRRADGSGTSFVFTSYLAKVneewnskigkgntvnWPTG---LGGKGNDGVAAFVQ 210
                 9999***************************99999.************************99*999999999999777755...78888***999995 PP

  PBP_like_2 179 n.ngaigyvsvaywlavkgysladvtngagkfvlptaataasalkvakias.nplawslqpveeniadgayPlsrftyiivyqpyayhgnnaalakaFl 275
                   +g igyv++ay++++ +++ +++  ++gk v+p++ ++ +a+k a++++ +      +++  + +++a+P++ +t+i++y++ +++ ++ a++ +F+
  EHT98839.1 211 RlPGSIGYVEYAYAKQN-NLTYTKLMDADGKAVAPSETSFSNAAKGADWSKsF----AQDLTF-QKGNDAWPITSTTFILIYKDQTNA-AKGAEVLKFF 302
                 55***************.*******************************8854....233333.5679***************76554.66******** PP

  PBP_like_2 276 dyllsd 281
                 d+++ d
  EHT98839.1 303 DWAYKD 308
                 ***976 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   7.8e-16     7e-12       2     178 ..      46     246 ..      45     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 7.8e-16
                 HHHHHH-TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCH..HCCCCCEEEEEEEEEEEE-CC-HCHCCCCHCCHHH......S--BGGGC... CS
    PBP_like   2 eelaeknpgvrvavanvGsggGlkalrageadiagshlldketee..ynapalrkaldgievvlvnlarreqglvvakgnpk......kitnwkdl... 89 
                  e++++  g +++++++Gs+gG+k++ a+++d ++s+ + k+++   y +  + + + g  v  vnl   + g ++  g+        +i++w+d    
  EHT98839.1  46 AEYQQA-TGSKINYQGIGSSGGVKQIIAKTVDFGASDAPMKDEDLqkYGLFQFPTVIGG-VVLAVNLPGIKSGQLTLDGKTVgdiylgNIKKWNDPaiv 142
                 577775.99*****************************977554323777777777777.678899999999999999977766666658888885556 PP

                 ........-S-B-EEEEE-TTSHHHHHHHHHHC-CEECT..........E-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EE CS
    PBP_like  90 ........adaplrlvnRetGSGtrdlfdellkkegisk..........ssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfvplaeer 170
                         +d ++ +v R+ GSGt  +f++ l+k + +           + ++g     + ++ vaa V++ ++ +g+   a a++ ++l++++l + +
  EHT98839.1 143 klnpgvklPDTNINVVRRADGSGTSFVFTSYLAKVNEEWnskigkgntvNWPTG--LGGKGNDGVAAFVQRLPGSIGYVEYAYAKQ-NNLTYTKLMDAD 238
                 7777777799**********************8874433544554554422333..345788899*******************87.8******98876 PP

                 EEEEEECT CS
    PBP_like 171 ydlvvrke 178
                    v + e
  EHT98839.1 239 GKAVAPSE 246
                 66665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2675.07
//
Query:       EHT98840.1  [L=320]
Description: membrane component of an ABC superfamily phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-18   65.4  19.9    5.4e-18   65.4  19.9    2.2  2  BPD_transp_1   Binding-protein-dependent transport system inn


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   5.6       0.1   1.9e+03     115     175 ..      27      88 ..      17      96 .. 0.56
   2 !   65.4  19.9     3e-22   5.4e-18       3     179 ..      95     308 ..      92     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.1
  BPD_transp_1 115 ilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlvadil 175
                   +l + +l+gg ++ +++ swp    +g  +l +  +   +e    g+l+ +  +l+ +++a i+
    EHT98840.1  27 ALIVLLLMGGIIVSLIFSSWPSiqkFGFAFLWTKTWDAPNEQF--GALVPIYGTLVTSIIALII 88 
                   5555566666666666677777555555555555555555555..5555555555555554444 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 3e-22
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........................vilsilghlilpviillllsaapyvrlirra 74 
                   ++++++   + ++l++ l + i++l ++Ps+v ++  +++f                         +   ++g +il++ ++l+++++py+  ++r+
    EHT98840.1  95 GIALFLTELSPGWLRRPLGTAIELLAAIPSIVYGMWGLFIFaplfaeyfqtpvgdvlsgipiigalFSGPAFGIGILAAGVILAIMIIPYIASVMRD 191
                   56777778899*********************88888888888899999***************987777899************************ PP

  BPD_transp_1  75 alrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...............ng 156
                   ++++ p + +e a+  G+++w++++++vlP ++  +i g++l +g++lg+++++ f++   G +++l +a+l ++ ++i+               ++
    EHT98840.1 192 VFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFII---GNTYQLDSASLFMPGNSITsalanefaeaesgvhVA 285
                   **********************************************************...779999999999999999999999******999966 PP

  BPD_transp_1 157 gvlalviavlllnlvadilqrll 179
                   ++  l+++++++++++ ++ +l 
    EHT98840.1 286 ALMELGLILFVITFIVLAISKLM 308
                   77777777777777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2352.47
//
Query:       EHT98841.1  [L=296]
Description: membrane component of an ABC superfamily phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-29  103.4  17.1    1.2e-29  103.4  17.1    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   4.0     0.046   8.2e+02     111     164 ..      31      84 ..      23     100 .. 0.57
   2 !  103.4  17.1   6.4e-34   1.2e-29       1     175 [.     101     289 ..      97     291 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.046
  BPD_transp_1 111 itglilafggllggavlleflgswpG.lgtllleailgydyseisnggvlalvia 164
                   +t+ +l++++ l   v+++f++ + G  g+ +  ++++ + ++++ gg la +++
    EHT98841.1  31 LTLSLLTMAFGLFWLVWILFTTVSRGiDGLSWSLFTESTPPPNTA-GGGLANALV 84 
                   566666666667777777777755555555555555555555555.444443333 PP

  == domain 2  score: 103.4 bits;  conditional E-value: 6.4e-34
  BPD_transp_1   1 gillGilaa.lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   gil+G+++a + r++ l +++r++ ++lls Ps+v++++++ + v+ +  +++ ++++i+l+l ++p+v+++++++lr +p++ +eaa+alG ++w+
    EHT98841.1 101 GILAGVYLAeYGRKSLLAEVIRFINDILLSAPSIVVGLFVYTI-VVAQMHHFSGWAGVIALALLQIPIVIRTTENMLRLVPDSMREAAYALGTPKWK 196
                   677788888****************************998855.666788899999***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..................nggvlalviavlllnlvadil 175
                   ++  ++l+++++ iitg++la++++ g+++ l+f++    l+++++++ +++++++                    ++gvl+++++vllln+va+++
    EHT98841.1 197 MISAITLKASVSGIITGVLLAVARIAGETAPLLFTA----LSNQFWSTDMMQPLANLPvtifkfamspfaewqslgWAGVLIITLCVLLLNIVARVV 289
                   ************************************....***************999***********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2184.67
//
Query:       EHT98842.1  [L=257]
Description: ATP-binding component of an ABC superfamily phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-34  119.7   0.0    1.8e-34  119.2   0.0    1.2  1  ABC_tran     ABC transporter
    4.9e-10   39.7   0.1    0.00016   21.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.4e-07   29.9   0.0    4.1e-06   26.4   0.0    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    1.8e-05   24.7   0.0    1.8e-05   24.6   0.0    1.2  1  AAA_15       AAA ATPase domain
    6.9e-05   22.5   0.0    0.00014   21.5   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
    7.7e-05   23.0   0.0    0.00026   21.3   0.0    1.9  2  AAA_22       AAA domain
     0.0001   22.2   0.0    0.00024   21.1   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
    0.00011   22.8   0.2    0.00014   22.4   0.2    1.4  1  AAA_23       AAA domain
    0.00018   22.0   0.0    0.00037   20.9   0.0    1.7  1  AAA_16       AAA ATPase domain
     0.0004   20.4   0.0    0.00064   19.7   0.0    1.2  1  Rad17        Rad17 P-loop domain
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.23   11.1   0.0    2.1  2  AAA_30       AAA domain
      0.021   15.0   0.0      0.078   13.1   0.0    1.7  1  AAA_33       AAA domain
      0.047   13.1   0.0       0.18   11.2   0.0    1.8  2  TniB         Bacterial TniB protein
      0.048   13.4   0.0       0.17   11.6   0.0    1.9  3  PRK          Phosphoribulokinase / Uridine kinase family
       0.05   12.8   0.0       0.05   12.8   0.0    1.2  1  G-alpha      G-protein alpha subunit
      0.078   12.9   0.0       0.55   10.1   0.0    2.0  2  ATPase_2     ATPase domain predominantly from Archaea
      0.082   12.4   0.0       0.28   10.6   0.0    1.9  1  PhoH         PhoH-like protein
      0.096   11.5   0.0       0.32    9.8   0.0    1.7  2  Adeno_IVa2   Adenovirus IVa2 protein
        0.1   12.1   0.1        0.4   10.2   0.0    1.8  2  AAA_25       AAA domain
       0.11   12.2   0.3        2.2    8.0   0.0    2.6  3  IstB_IS21    IstB-like ATP binding protein
       0.12   12.1   0.0       0.26   11.0   0.0    1.6  2  AAA_24       AAA domain
       0.13   12.5   0.0        0.3   11.3   0.0    1.6  1  AAA_28       AAA domain
       0.15   12.0   0.0       0.38   10.7   0.0    1.7  1  AAA_5        AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   2.3e-37   1.8e-34       1     136 [.      26     181 ..      26     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 2.3e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren............. 79 
                 lkn++l++ +++++a++G++G+GKStLl+++ ++++      +eG+illdg+++    q++  lr++ig+++q+p+ fp + +++n             
  EHT98842.1  26 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMYSLypeqrAEGDILLDGDNILAsnQDIALLRARIGMVFQKPTPFPMS-IYDNiafgvrlfeklsr 123
                 79*******************************9988888889**********99999***********************.9**************** PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++de+++ al+k  l   +++++++s++sLSgGq+qr+++ar ++ +p++lllDEp+
  EHT98842.1 124 aDMDERVQWALTKAALWTETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 181
                 *9*******************************************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.6e-06    0.0067       1      25 [.      38      62 ..      38     111 .. 0.77
   2 !   21.6   0.0     2e-07   0.00016     235     298 ..     152     211 ..     113     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.6e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl 25
                ++++iGp g+GKS+LL+++  + +l
  EHT98842.1 38 VTAFIGPSGCGKSTLLRTFNKMYSL 62
                699**************99655555 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2e-07
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 ++lS G+++ l+++  ++ ++    +ll+DEp + L+P  + r+ el+ el++ +  v+++TH+
  EHT98842.1 152 YSLSGGQQQRLCIARGIAIRP---EVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHN 211
                 567788887777777777777...9*************888888888888877.899******8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   5.2e-09   4.1e-06      13     206 ..      26     219 ..      13     228 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 5.2e-09
                 EECEEEEEET.TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC..CCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  13 yagktvilpf.sksftaivGpNGSGKsnlldAilFvLGersakklrsekl..sdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge 108
                 +  k++ l++ ++++ta +Gp G+GKs ll     + +    +    + l   d i +s++  ++ +a++ ++f+++        +++   +r+++k +
  EHT98842.1  26 L--KNINLDIaKNQVTAFIGPSGCGKSTLLRTFNKMYSLYPEQRAEGDILldGDNILASNQDIALLRARIGMVFQKPTPFPMSIYDNIAFGVRLFEKLS 122
                 4..344444414579****************998777765554444443322223344699999***********999985555666666666655544 PP

                 .....EEEEETTEEE-H.HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                 .....xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 109 .....seykingkevtk.kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201
                       +++   +++   +e ++ l+++g    +LSgG+++ + +a  +Ai+   p+ + llDe  +aLD   + ++ el+ e +++  +++++++ ++
  EHT98842.1 123 radmdERVQWALTKAALwTETKDKLHQSGY---SLSGGQQQRLCIARGIAIR---PE-VLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 214
                 111122222222233333566666666655...6*******99999998884...55.5699*********************************9988 PP

                 CCC-S CS
                 xxxxx RF
       SMC_N 202 lekad 206
                  ++++
  EHT98842.1 215 AARCS 219
                 87764 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.3e-08   1.8e-05      11      83 ..      23      97 ..      11     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.3e-08
      AAA_15 11 FRslkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn..kkvikiekedleifeniseskdikIdvef 83
                F +lk++ +d+ ++ +t +iG+ ++GKS++l+ ++++ +   + +  +  i ++ +++  ++++    + +I + f
  EHT98842.1 23 FHALKNINLDIAKNqVTAFIGPSGCGKSTLLRTFNKMYSLY-PEQraEGDILLDGDNILASNQDIALLRARIGMVF 97
                7799*******9999********************999955.2224655555555555555566666666666666 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.8e-07   0.00014      10      40 ..      21      54 ..      11      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.8e-07
      AAA_29 10 gtfdg.htieidlkg..atlltGpsGsGKSTllD 40
                g f+  + i++d +   +t ++GpsG GKSTll 
  EHT98842.1 21 GKFHAlKNINLDIAKnqVTAFIGPSGCGKSTLLR 54
                67888888877776667***************95 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.3e-07   0.00026       5      38 ..      36      83 ..      33     200 .. 0.70
   2 ?   -1.2   0.0       2.9   2.3e+03      80     102 ..     193     214 ..     170     240 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.3e-07
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee..............e 38
                 ++++ +G+sG+GK+tllr++ + +  +++++               +
  EHT98842.1 36 NQVTAFIGPSGCGKSTLLRTFNKMYSLYPEQRAegdilldgdnilasN 83
                578999*******************99988877444444333333331 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.9
      AAA_22  80 ealeqalraravielliiDEaqh 102
                 e l   l++ ++ ++++  ++q 
  EHT98842.1 193 EELITELKQDYT-VVIVTHNMQQ 214
                 333333333333.5666666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     3e-07   0.00024      89     120 ..      25      57 ..       3      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3e-07
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinall 120
                  +l++++  +++ ++++++G+SG GKStL+ +++
   EHT98842.1  25 ALKNINLDIAKnQVTAFIGPSGCGKSTLLRTFN 57 
                  566676666665****************98876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2   1.8e-07   0.00014       2      40 ..      11      57 ..      10     160 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.8e-07
      AAA_23  2 Lkienfrsf.......rdqeidF...skgltlItGpNGaGKTTildAik 40
                ++++n++ +       ++  i++   ++ +t+++Gp G+GK+T+l+ + 
  EHT98842.1 11 IQVRNLNFYygkfhalKN--INLdiaKNQVTAFIGPSGCGKSTLLRTFN 57
                666666666544442244..66666999*****************9776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.8e-07   0.00037      26     147 ..      38     215 ..      23     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.8e-07
      AAA_16  26 lvllsGesGvGKsslvrellr....alekd..........................ggiflrgkcdqlesaipysalaqalareellrqlldeaesael 94 
                 ++ ++G+sG+GKs+l+r++ +    +   +                          ++  + +k + +    p+s++ ++++  +l+++l +++ + e+
  EHT98842.1  38 VTAFIGPSGCGKSTLLRTFNKmyslY--PEqraegdilldgdnilasnqdiallraRIGMVFQKPTPF----PMSIYDNIAFGVRLFEKLSRADMD-ER 129
                 67789***************987541..3345666677777777777776666655455566666666....667777777777899999888444.44 PP

      AAA_16  95 eawrekleeala........................................avpelagaeasrllellkrllallsrderplvlvlDdlqwa 147
                  +w+   ++a+                                         ++++l++ +  r+ el+++l     + + ++v+v  ++q+a
  EHT98842.1 130 VQWAL--TKAALwtetkdklhqsgyslsggqqqrlciargiairpevllldePCSALDPISTGRIEELITELK----Q-DYTVVIVTHNMQQA 215
                 44443..333333456666666777777777777777777777777777777666666665555555555554....3.33366666666655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   8.2e-07   0.00064      34      75 ..      25      66 ..      23      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.2e-07
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklre 75
                +lk   L+ +k+++    GPsGCgkst ++   k ++   ++
  EHT98842.1 25 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMYSLYPEQ 66
                67888899999**********************998766555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.23      17      43 ..      35      61 ..      29      72 .. 0.87
   2 ?    2.2   0.0      0.17   1.3e+02      88     129 ..     170     215 ..     123     224 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_30 17 gdrvavltGpAGtGKttalkalreawe 43
                +++v++  Gp G GK+t+l++ ++++ 
  EHT98842.1 35 KNQVTAFIGPSGCGKSTLLRTFNKMYS 61
                45699****************999875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.17
      AAA_30  88 pg.tllivDEagmv....dtkqlaallkaaekagakvilvGDerQla 129
                  + ++l+ DE   +    +t  +++l++++++ + +v++v  + Q a
  EHT98842.1 170 IRpEVLLLDEPCSAldpiSTGRIEELITELKQ-DYTVVIVTHNMQQA 215
                 34488888887766677799999999999999.77777777777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0    0.0001     0.078       1      19 [.      38      56 ..      38      82 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                ++ ++G++G+GKstl++  
  EHT98842.1 38 VTAFIGPSGCGKSTLLRTF 56
                5689***********9975 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023      0.18      36      67 ..      37      68 ..      21      74 .. 0.82
   2 ?   -1.0   0.0       1.2   9.6e+02     117     165 ..     169     215 ..     153     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
        TniB 36 pnlllvGdsnnGKtmivekFarlhppekdeda 67
                +   ++G+s +GK+++++ F ++++ +++++a
  EHT98842.1 37 QVTAFIGPSGCGKSTLLRTFNKMYSLYPEQRA 68
                66789******************988776654 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteea 165
                 +++++vL++DE  ++l     +  ++ +++  L++++ + iv+   ++a
  EHT98842.1 169 AIRPEVLLLDEPCSALD--PISTGRIEELITELKQDYTVVIVTHNMQQA 215
                 56788999999777773..344444555566666666666666665555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.17       4      25 ..      41      62 ..      38      87 .. 0.75
   2 ?   -2.7   0.0       5.4   4.2e+03     132     155 ..     105     129 ..     104     130 .. 0.84
   3 ?   -3.0   0.0       6.5   5.1e+03      75     100 ..     193     218 ..     188     231 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
         PRK  4 vagsSGaGkttvarklekifgr 25
                  g+SG+Gk+t+ r+++k+   
  EHT98842.1 41 FIGPSGCGKSTLLRTFNKMYSL 62
                579**************99873 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.4
         PRK 132 lkiyvdisidlelarklqR.DiaeR 155
                 ++iy  i   ++l  kl+R D+ eR
  EHT98842.1 105 MSIYDNIAFGVRLFEKLSRaDMDER 129
                 6788888899999999999888887 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.5
         PRK  75 yevlkelkegkkvdkpiYsheteeaa 100
                 +e + elk+  +v + + + +++ + 
  EHT98842.1 193 EELITELKQDYTVVIVTHNMQQAARC 218
                 55555666555555555555444444 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.4e-05      0.05      27      74 ..      40      86 ..      25     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.4e-05
                EEEESTTSSHHHHHHHHHHHCS----HHHHHC.CHHHHHHHHHHHHHHH CS
     G-alpha 27 lllGqseSGKsTilkqlkllykkgfseeelat.wraviqlnivrsikti 74
                 ++G s++GKsT+l+ + ++y  +   e++a+    +   ni+ s ++i
  EHT98842.1 40 AFIGPSGCGKSTLLRTFNKMY--SLYPEQRAEgDILLDGDNILASNQDI 86
                589****************99..44444444434445555555555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0007      0.55      20      40 ..      36      56 ..      24      65 .. 0.78
   2 ?    0.0   0.0      0.84   6.6e+02     106     153 ..     192     238 ..     171     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0007
    ATPase_2 20 neiyfiYGpegsGKtaLlkei 40
                n++    Gp g+GK++Ll+ +
  EHT98842.1 36 NQVTAFIGPSGCGKSTLLRTF 56
                5666667***********987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.84
    ATPase_2 106 ielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnlieslt 153
                 ie+l+ ++k++ + ++i+   +q++       a  ++ eL+++ + +t
  EHT98842.1 192 IEELITELKQDYT-VVIVTHNMQQAARCSDHTAFMYLGELIEFSDTDT 238
                 5666666666644.9999999999997777778888999988877766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00036      0.28      16      35 ..      33      52 ..      22     235 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
                HHH-SEEEEE--TTSSTTHH CS
        PhoH 16 lkkndivfaiGpaGtGKtyl 35
                + kn+++  iGp+G+GK+ l
  EHT98842.1 33 IAKNQVTAFIGPSGCGKSTL 52
                669**************876 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0004      0.32      85     117 ..      35      64 ..      11      67 .. 0.72
   2 ?   -1.4   0.0      0.99   7.7e+02     235     248 ..     202     215 ..     195     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0004
  Adeno_IVa2  85 lqPviGviyGPtGsGksqllrnlissklisPiP 117
                 ++ v     GP G+Gks llr++  +k+ s  P
  EHT98842.1  35 KNQV-TAFIGPSGCGKSTLLRTF--NKMYSLYP 64 
                 4444.4456************86..55655555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.99
  Adeno_IVa2 235 gfsvlvvlhnlnPr 248
                  ++v++v hn++  
  EHT98842.1 202 DYTVVIVTHNMQQA 215
                 6999******9865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00052       0.4      30      50 ..      33      53 ..      21      55 .. 0.89
   2 ?   -0.9   0.0       1.3     1e+03     125     148 ..     187     208 ..     123     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
      AAA_25 30 lpagelallaGapgtGKttla 50
                ++++ +++++G++g+GK+tl+
  EHT98842.1 33 IAKNQVTAFIGPSGCGKSTLL 53
                68999**************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
      AAA_25 125 lltadvdaleaaieevegvrlvvi 148
                 + t+ +++l+ ++++  ++ +v++
  EHT98842.1 187 ISTGRIEELITELKQ--DYTVVIV 208
                 456667777777777..4555553 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0028       2.2      44      64 ..      33      53 ..      21      59 .. 0.84
   2 ?   -0.5   0.0       1.1   8.7e+02      85     105 ..     116     136 ..     113     142 .. 0.87
   3 ?   -0.0   0.0      0.82   6.4e+02     106     150 ..     169     213 ..     156     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0028
   IstB_IS21 44 iekkenivllGpsGvGKshla 64
                i+k++  +++GpsG GKs l 
  EHT98842.1 33 IAKNQVTAFIGPSGCGKSTLL 53
                7889999***********885 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
   IstB_IS21  85 dLveelkrarrdgklaralkr 105
                 +L+e+l+ra+ d++++ al++
  EHT98842.1 116 RLFEKLSRADMDERVQWALTK 136
                 79************9998876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.82
   IstB_IS21 106 llkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnlp 150
                  +++++l+lD+   +l p++    e+l   +++ y  + +i+t n++
  EHT98842.1 169 AIRPEVLLLDEpcSALDPISTGRIEELITELKQDY--TVVIVTHNMQ 213
                 57889999999333566666666666655555555..4566777765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00033      0.26       2      25 ..      36      58 ..      35      92 .. 0.83
   2 ?   -3.0   0.0       6.6   5.1e+03     118     133 ..     196     213 ..     190     222 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
      AAA_24  2 klkiliyGpsgiGKTtlakelgpk 25
                ++  + +Gpsg GK+tl++++ +k
  EHT98842.1 36 NQVTAFIGPSGCGKSTLLRTF-NK 58
                5667889*************9.55 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.6
      AAA_24 118 lqelrk..nvifiahekt 133
                 ++el++  +v+++ h  +
  EHT98842.1 196 ITELKQdyTVVIVTHNMQ 213
                 455555567777777665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00039       0.3       3      21 ..      40      58 ..      38      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00039
      AAA_28  3 vitGgestGKTtlleaLaa 21
                +++G++++GK+tll+ +++
  EHT98842.1 40 AFIGPSGCGKSTLLRTFNK 58
                79************98765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00049      0.38       4      23 ..      41      60 ..      39      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                 +Gp+G+gKs+l + + +++
  EHT98842.1 41 FIGPSGCGKSTLLRTFNKMY 60
                59************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1991.21
//
Query:       EHT98843.1  [L=245]
Description: negative regulator of PhoR/PhoB two-component regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-39  133.1   9.0    8.2e-21   74.3   2.8    2.1  2  PhoU        PhoU domain
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.58   10.3   0.0    2.3  2  Mst1_SARAH  C terminal SARAH domain of Mst1


Domain annotation for each model (and alignments):
>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   2.8   9.2e-25   8.2e-21       4      87 ..      28     111 ..      25     113 .. 0.97
   2 !   62.9   0.4   3.2e-21   2.9e-17       1      89 []     128     213 ..     128     213 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 9.2e-25
                 HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   4 maeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniae 87 
                 m+ +ve++l da++a  + d ela++vi+ d++++ +e ei++++++++akrqp a dlr ++++++ +++lERigD a++i++
  EHT98843.1  28 MGGMVEQQLTDAITAMHNLDGELAQRVIDGDQKVNMMEVEIDEACVRIIAKRQPTAIDLRLVMAIIKTISELERIGDVAEKISR 111
                 9*********************************************************************************98 PP

  == domain 2  score: 62.9 bits;  conditional E-value: 3.2e-21
                 HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   1 lrrmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniaerv 89 
                 l+++++ + +ml+d+l+a+++ d + a +++++d+++d+ ++ i r+l++ ++++      +  +l++l  ar +ERigD + ni+e++
  EHT98843.1 128 LESLGRHTVQMLHDVLDAFARMDLNEAVQIYREDKKVDKEYEGIVRQLMTYMMEDPR---TIPSVLTALFCARAIERIGDRCQNICEII 213
                 57899***********************************************97665...47899**********************86 PP

>> Mst1_SARAH  C terminal SARAH domain of Mst1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.7   1.5e+04      23      31 ..      14      22 ..      10      23 .. 0.74
   2 ?   10.3   0.0   6.5e-05      0.58      21      40 ..      62      81 ..      47      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.7
  Mst1_SARAH 23 MEqEieelr 31
                  +E+e +r
  EHT98843.1 14 FNAELEHIR 22
                567888887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.5e-05
  Mst1_SARAH 21 peMEqEieelrkrYqaKRqP 40
                ++ME Ei+e   r  aKRqP
  EHT98843.1 62 NMMEVEIDEACVRIIAKRQP 81
                48****************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1838.56
//
Query:       EHT98844.1  [L=123]
Description: hypothetical protein CKS_1193 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.001   19.3   0.0     0.0015   18.8   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0013   19.4   0.0     0.0018   19.0   0.0    1.2  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.015   15.7   0.0       0.02   15.3   0.0    1.3  1  Acetyltransf_7  Acetyltransferase (GNAT) domain
      0.046   13.7   0.0      0.074   13.0   0.0    1.5  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.3e-07    0.0015      31     116 ..      21     108 ..       3     108 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
                     TTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHH.HHHHHTTE.SEEEEEEETT.EHHHHHHHHHTT CS
  Acetyltransf_1  31 eaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLleale.erareegi.kkivlaveed.ndaairlYeklG 116
                      +++ ++ +e+ + +Gfi +   +    +   i + ++ pey+g+ l+s+  + l  + +++ g  + + + + ++ n+++ir+ ek G
      EHT98844.1  21 SDGSVFILYEEAQRVGFIVCEEGTVGFLQAFQITEEVILPEYQGRSLASLAQQVLRkQLCLS-GKrNSLLAGTIVPgNRPSIRVAEKAG 108
                     34455556666678888876666664445566777799***********9876666344444.56477777888888********9988 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     4e-07    0.0018      44     136 ..      20     108 ..       4     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4e-07
  Acetyltransf_3  44 a.....waeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgkGyateavralleyafeelgler.lvavidkeNeaSirvl 132
                     +     +   +e + +g+++++++t  +G+   +++ ee        ++ p+++g+ +a+ a + l + +    + +  l  +i + N+ Sirv+
      EHT98844.1  20 IsdgsvFILYEEAQRVGFIVCEEGT--VGFLQAFQITEE--------VILPEYQGRSLASLAQQVLRKQLCLSGKRNSlLAGTIVPGNRPSIRVA 104
                     3444555666777889999997777..899988888887........799****************99997555555548889************ PP

  Acetyltransf_3 133 eklG 136
                     ek+G
      EHT98844.1 105 EKAG 108
                     ***9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   4.5e-06      0.02       2      43 ..      22      69 ..      21      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.5e-06
                    TEEEEEEEETTEEEEEEEEEEES......TCTEEEEE-GGGTTSSHHH CS
  Acetyltransf_7  2 kgevfVaeddgkivGfialslld......aeitrlaVdpeyrgkGiGr 43
                    +g+vf+++++ + vGfi++++        ++it+ +++pey+g+ +++
      EHT98844.1 22 DGSVFILYEEAQRVGFIVCEEGTvgflqaFQITEEVILPEYQGRSLAS 69
                    6789************99888878887766666678********8886 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.074      29      80 ..      58     112 ..      28     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                 E-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEE...EETT-HHHHHHHHHHT-EEE CS
        FR47  29 vlpehrrrGlgsrlvkalakeiaergktvllv...vvasNtpsirlyeklGfeki 80 
                 +lpe ++r l+s+  + l k++   gk  +l+   +v++N psir+ ek G +  
  EHT98844.1  58 ILPEYQGRSLASLAQQVLRKQLCLSGKRNSLLagtIVPGNRPSIRVAEKAGRRCV 112
                 57899******999999999999999888876333789**********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 997.68
//
Query:       EHT98845.1  [L=481]
Description: xylulokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-82  277.2   0.0    1.6e-82  276.8   0.0    1.2  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    1.6e-32  112.9   0.1    2.7e-32  112.1   0.1    1.4  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
     0.0039   16.7   0.0      0.088   12.3   0.0    2.2  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.8   0.0   2.7e-86   1.6e-82       1     245 []       1     240 [.       1     240 [. 0.99

  Alignments for each domain:
  == domain 1  score: 276.8 bits;  conditional E-value: 2.7e-86
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 +++g+D+Gt+++k+++ld +g+v+a+++a+l++s+p++ w+eqdpe +wqa+ +a++++ +++  + + +ka+g +gq++g++llD + ++L++ailw+
  EHT98845.1   1 MVIGIDIGTSGVKVVLLDVQGQVAAVETAPLTVSRPHPLWSEQDPESWWQATDKAMQALAQRH--DLSTVKAVGLTGQMHGATLLDAQHRVLRPAILWN 97 
                 79*************************************************************..********************************** PP

                 --TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 100 drrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgi 198
                 d r+  ++++l++  +    + +tg+++++gft+ kl W++++ep++f++i+ +ll++dyL+wrL+g+f++d+++a+++m+++++k++w+ee+la++g+
  EHT98845.1  98 DGRSGDQCRELEQ--RVPDSRRITGNLMMPGFTAPKLLWVQQHEPDIFARIARVLLPKDYLRWRLSGEFASDMSDAAGTMWLDVEKRDWSEEMLAACGL 194
                 ************9..9999******************************************************************************** PP

                 -GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 peelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +++++P+l e+++i+g+l + +a+ ++l  +vp+v+gggD++a+a+G
  EHT98845.1 195 DHSQMPALFEGNQITGTLSAAIAQRWSLP-QVPIVAGGGDNAAGAVG 240
                 ***************************77.***************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.1   4.5e-36   2.7e-32       2     197 ..     250     435 ..     249     436 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 4.5e-36
      FGGY_C   2 kvslGTssflllvgtkpv....isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafs 96 
                 ++slGTs + ++v++ ++     ++h++++ ++     + ++l+  +  a s ++w  +  g+       ++v  +la  +a +a+ da+ + f+p++s
  EHT98845.1 250 MLSLGTSGVYFVVSEGYLsnpeQAVHSFCHALP-----QRWHLMSVMLSAASCLDWAASLTGC-------DDVPHLLA--EAERAKDDAPALWFLPYLS 334
                 689*********998888766688888888888.....**********************999.......66666777..58899999999******** PP

      FGGY_C  97 glrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpkt.aeatalGaAilA 194
                 g+r+p+++p+a g+++g +++++ +++arA+le+v ++l+++++  +++ g+ ++++++ GGg++++ ++q+lAdi g +++  +  + ++alGaA lA
  EHT98845.1 335 GERTPHNNPHACGSFFGFTHQHGRPELARAVLEGVGFALADGMDVVHDC-GVTPESIMLIGGGARSRYWRQMLADISGQTLDYCEGgDVGPALGAARLA 432
                 **********************************************999.************************************9************ PP

      FGGY_C 195 ava 197
                  +a
  EHT98845.1 433 QMA 435
                 998 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.5e-05     0.088       1      25 [.       3      27 ..       3      98 .. 0.81
   2 ?    2.3   0.0     0.016        98     189     267 .]     360     432 ..     339     432 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
                 EEEEE-SSEEEEEEEETTTEEEEEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrg 25
                 +GiD+G++ +k+vl+d +g+v++  
   EHT98845.1  3 IGIDIGTSGVKVVLLDVQGQVAAVE 27
                 7*******************98754 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.016
                  --HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 189 ekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  e a+++l+g+  a+a+  + +++  g +++ ++l GG a++    ++l      ++ + + +     ++ +alGAa +A
   EHT98845.1 360 ELARAVLEGVGFALADG-MDVVHDCGVTPESIMLIGGGARSRYWRQML-----ADISGQTLDYCEGGDVGPALGAARLA 432
                  66788899999999987.5677888889899**********4444444.....44555567788899999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3573.59
//
Query:       EHT98846.1  [L=440]
Description: D-xylose isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00042   19.8   0.0    0.00098   18.6   0.0    1.6  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.5e-08   0.00098      22     177 ..     115     284 ..     103     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.5e-08
                   HHHCHHHHHHHHHHHHHHTTSEEE..EEEECCCHSTCTHCHTTCS.....HHHHHHHHHHHHHHHHHHTBSEEEEEBCC..GBCTTTSGHHHHHHHH CS
  AP_endonuc_2  22 vselsdeelrelrkaldelglria..slslftrfgypdederear.....reesvdalkraielaaaLGapllvlhpGt..agagpkgseeeawerl 109
                   ++e+   + ++l++  +e+gl++     ++ft++ y      +++       ++ +++ +a+++++ LG+++ vl+ G+  +  + + + ++ +e++
    EHT98846.1 115 YRENLAVMTDTLQAKQQETGLKLLwgTANCFTHPRYGAGA--ATNpdpevFSWAASQVCSAMKATQTLGGENYVLWGGRegYETLLNTDLRQEREQI 209
                   4444667788899999999999752234566666665554..222557799*************************997777777888888999999 PP

                   HHHHHHHHHHHHHHT..SEEEEE--TTTTSSSTC....HHHHHHHHHHTTTT.EEEEEEHHHHHHHTTTHHHHHH CS
  AP_endonuc_2 110 aeslneladyaekeg..vklalEtlagsgvelgd....eelarlldavdspn.vgvclDtgHlliaeedvddalr 177
                    + ++ ++++ +k g   +l++E+ + +++   +    +++  +l++ + ++ ++v+    H+ +a+  + ++++
    EHT98846.1 210 GRFMQMVVEHKHKIGfqGTLLIEPKPQEPTKHQYdydvATVYGFLKQFGLEKeIKVNVEANHATLAGHSFHHEIA 284
                   9999999999998887778*********99998899999999999999999999999999999999777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3446.42
//
Query:       EHT98847.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98847.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98847.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98847.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98847.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98847.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98847.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98847.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98847.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98847.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98847.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98847.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98847.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98847.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98847.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98847.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98847.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98847.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2298.23
//
Query:       EHT98848.1  [L=506]
Description: ATP-binding component of an ABC superfamily xylose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-54  182.1   0.3    2.3e-31  109.2   0.1    2.2  2  ABC_tran     ABC transporter
    2.4e-12   47.3   0.9     0.0001   22.3   0.0    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    6.8e-05   22.4   0.7       0.88    9.0   0.0    3.2  3  SMC_N        RecF/RecN/SMC N terminal domain
    0.00077   19.2   0.0     0.0024   17.6   0.0    1.8  1  AAA_29       P-loop containing region of AAA domain
     0.0017   18.1   0.0     0.0032   17.2   0.0    1.3  1  AAA_15       AAA ATPase domain
     0.0043   17.6   0.0     0.0094   16.5   0.0    1.5  1  AAA_23       AAA domain
  ------ inclusion threshold ------
       0.02   14.7   0.3        0.3   10.8   0.0    2.3  2  Ad_Cy_reg    Adenylate cyclase regulatory domain
      0.024   14.9   0.0        2.6    8.3   0.0    3.2  2  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.025   13.4   1.2        3.3    6.4   0.1    3.3  3  ABC_ATPase   Predicted ATPase of the ABC class
      0.028   14.3   0.0       0.18   11.7   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
      0.051   13.5   0.0       0.44   10.5   0.0    2.2  2  Rad17        Rad17 P-loop domain
      0.062   13.6  10.5      0.023   14.9   2.3    3.6  4  AAA_22       AAA domain
      0.071   13.1   0.1        1.9    8.5   0.0    2.6  3  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.091   12.7   0.1       0.43   10.5   0.0    2.1  2  NACHT        NACHT domain
       0.12   12.1   0.9        5.7    6.7   0.5    2.8  2  DEAD         DEAD/DEAH box helicase
       0.13   12.4   0.1        1.7    8.8   0.0    2.7  3  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.1     2e-34   2.3e-31       1     137 []      18     169 ..      18     169 .. 0.95
   2 !   71.1   0.0   1.1e-22   1.2e-19       1     136 [.     275     431 ..     275     432 .. 0.82

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................e 80 
                 l+nvsl+l +ge++ + GenG+GKStL+k+l+gl+     eG+i++ g++++  + +   rk i +++qe  l ++ltv en                +
  EHT98848.1  18 LDNVSLQLDAGEVLSLCGENGSGKSTLMKILCGLYPHgeFEGQIQFSGDPIQAqTIRDTERKGIVIIHQELALVRQLTVMENiflgaelgrfgmvddeT 116
                 79*********************************988789************666778899*******************************998888 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++++l++++l+  +dt+v     +L  Gq+q v++aral k+ +ll+lDEpt+
  EHT98848.1 117 MTLRCQQLLERVKLNVSPDTRV----GELGLGQQQLVEIARALNKQVRLLILDEPTS 169
                 8888******************....*****************************96 PP

  == domain 2  score: 71.1 bits;  conditional E-value: 1.1e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx............... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren............... 79 
                 ++n+s++l++ge+++i G  GaG +  +++l g      +Gei+++g++++  +  e   + i+++p++   + + p + v++n               
  EHT98848.1 275 VNNLSFTLRKGEILGIAGLVGAGRTETVQCLFGVWPGrWQGEIRINGNKVTIrDCQEAIAHGIAMVPEDrkkDGIVPLMGVGKNitlaaldqfsqrlst 373
                 589******************************987768*******9999986888999**********99999999999****999999866555555 PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++ +e++++ + +    +k++  +     LSgG +q+  la++ll +pk+l+lDEpt
  EHT98848.1 374 iDEASELHAINAAIARLRVKTSSPELPIGRLSGGNQQKAILAKCLLLNPKILILDEPT 431
                 4333333333333333334444444445*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-05     0.013       4      34 ..      33      60 ..      30      79 .. 0.73
   2 !    6.7   0.2    0.0048       5.3     235     297 ..     139     198 ..     118     203 .. 0.80
   3 !   22.3   0.0     9e-08    0.0001     211     296 ..     364     460 ..     340     467 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
      AAA_21  4 liGpNgsGKSnLLdaldllarldrdvegltd 34
                l G NgsGKS+L+++l +l    +++e+++ 
  EHT98848.1 33 LCGENGSGKSTLMKILCGL---YPHGEFEGQ 60
                89**************666...344444444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0048
      AAA_21 235 relSdGtkrllalltallralkkg.sllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  el+ G+++l      ++ral k  +ll++DEp ++L  + ++ ll ++ +l+++g+ +i  +H
  EHT98848.1 139 GELGLGQQQLVE----IARALNKQvRLLILDEPTSSLTEQETTVLLSIIHNLREHGIACIYISH 198
                 567777777733....444444444************999999999999999999999999999 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 9e-08
      AAA_21 211 svderlrer..............gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                 + ++ +r +                ++ ++++  elp+  lS G ++  a+l+ +l +++  ++l++DEp  g++  +  +++ l+++l + g+ vi+ 
  EHT98848.1 364 LDQFSQRLStideaselhainaaIARLRVKTSSPELPIGRLSGGNQQK-AILAKCLLLNP--KILILDEPTRGIDVGARQEIYVLINALVQQGISVIVI 459
                 4444444445555555556667788888999999**************.99999999999..7*************************99999999886 PP

      AAA_21 296 T 296
                 +
  EHT98848.1 460 S 460
                 5 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00079      0.88      26      42 ..      30      46 ..      12      53 .. 0.78
   2 !    7.2   0.1    0.0026         3     136     213 ..     140     214 ..      75     221 .. 0.79
   3 ?    3.0   0.0     0.052        58     110     198 ..     316     462 ..     310     482 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00079
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                + ++ G+NGSGKs l+ 
  EHT98848.1 30 VLSLCGENGSGKSTLMK 46
                67899********9986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0026
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvtk 213
                 +L  G+++Lv +a        k+  l +lDe  + L e++++ + +++++ +++    i is++ + ++  + ++ v  
  EHT98848.1 140 ELGLGQQQLVEIARA----LNKQVRLLILDEPTSSLTEQETTVLLSIIHNLREHgIACIYISHKLNEVRAISDTICVIR 214
                 566677777776543....4577889************************99987999******999998877776665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.052
                 EEEETTEEE-HHHHHHHHHCTT-STT..............................................................CS-HH..HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................xxxxx..xxxx RF
       SMC_N 110 eykingkevtkkevsellesagiske..............................................................lLSgG..ektL 144
                 e++ing++vt ++ +e +++ gi +                                                                LSgG  +k++
  EHT98848.1 316 EIRINGNKVTIRDCQEAIAH-GIAMVpedrkkdgivplmgvgknitlaaldqfsqrlstideaselhainaaiarlrvktsspelpigRLSGGnqQKAI 413
                 56777888887777777653.444444577778888888888888888888888888888888888888888888888888888888899999333444 PP

                 HHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N 145 valaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr 198
                 +a  Ll      +p+ + +lDe    +D   ++++  l+++  ++   +ivis +
  EHT98848.1 414 LAKCLL-----LNPK-ILILDEPTRGIDVGARQEIYVLINALVQQgISVIVISSE 462
                 444455.....3454.678999999999999999999999887766888998865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.1e-06    0.0024      13      39 ..      19      45 ..      16      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ ++++d  ++  l G++GsGKSTl+
  EHT98848.1 19 DNVSLQLDAGEVLSLCGENGSGKSTLM 45
                66778888666999************8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.8e-06    0.0032      12      43 ..      16      48 ..      16      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsileal 43
                ++l++v+++l+   +  l+G+N+sGKS+++++l
  EHT98848.1 16 KALDNVSLQLDAGeVLSLCGENGSGKSTLMKIL 48
                6788888888887799***************98 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.3e-06    0.0094      11      40 ..      19      49 ..       5      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.3e-06
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTildAik 40
                ++++++++   +  ++G+NG+GK+T++  ++
  EHT98848.1 19 DNVSLQLDAgEVLSLCGENGSGKSTLMKILC 49
                666777766246679************9888 PP

>> Ad_Cy_reg  Adenylate cyclase regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.22   2.5e+02     108     129 ..     137     158 ..     122     162 .. 0.85
   2 ?   10.8   0.0   0.00027       0.3      11      55 ..     433     477 ..     428     490 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.22
   Ad_Cy_reg 108 rfldlGldedqivavarvLaeg 129
                 r  +lGl ++q+v++ar L + 
  EHT98848.1 137 RVGELGLGQQQLVEIARALNKQ 158
                 5669*************99875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00027
   Ad_Cy_reg  11 gLegkaRaeRaeliewLlerGvsieeiraaaepmLLaaervlgdd 55 
                 g++  aR+e   li+ L+++G+s+  i++   ++L  + r+l   
  EHT98848.1 433 GIDVGARQEIYVLINALVQQGISVIVISSELPEVLGLSDRILVMH 477
                 78889******************************6677766543 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0023       2.6      55      89 ..     150     184 ..     141     185 .. 0.80
   2 ?    2.4   0.0      0.17   1.9e+02      31      42 ..     402     413 ..     381     448 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0023
     SbcCD_C  55 ssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + a++ ++++rl++LDE  s+l e+ ++ ll++++
  EHT98848.1 150 EIARALNKQVRLLILDEPTSSLTEQETTVLLSIIH 184
                 555446899******************99999876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
     SbcCD_C  31 gtlSGGekqfla 42 
                 g+lSGG +q+++
  EHT98848.1 402 GRLSGGNQQKAI 413
                 566666665544 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.073        81     245     271 ..      28      54 ..      22      60 .. 0.81
   2 ?    1.4   0.0     0.095   1.1e+02     355     410 ..     161     212 ..     146     222 .. 0.62
   3 ?    6.4   0.1    0.0029       3.3     385     416 ..     450     481 ..     439     502 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.073
                 S.EEEEEE-TTSSHHHHHHHHHHCCSEE CS
  ABC_ATPase 245 G.vtlIvGggfhGKsTLLeAlekGvynh 271
                 G v  + G +  GKsTL++ l  G y+h
  EHT98848.1  28 GeVLSLCGENGSGKSTLMKIL-CGLYPH 54 
                 55778899**********966.688888 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.095
                 HH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEE CS
  ABC_ATPase 355 lmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvil 410
                 l+i De  ++l+++e    t l++ +++l +++g+  i ++  +++  +++dt+ +
  EHT98848.1 161 LLILDEPTSSLTEQET---TVLLSIIHNL-REHGIACIYISHKLNEVRAISDTICV 212
                 4555666666662222...5566666666.66677777777666666666666665 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0029
                 HHH--EEEEEESS-GCCTTT-SEEEEEETTEE CS
  ABC_ATPase 385 kklgvstilvvggsgdyldvAdtvilmeeykp 416
                  + g+s+i++++ + + l ++d++++m+e ++
  EHT98848.1 450 VQQGISVIVISSELPEVLGLSDRILVMHEGQI 481
                 568************************98666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.18      88     121 ..      16      50 ..       3      80 .. 0.81
   2 ?   -2.3   0.0       3.2   3.6e+03      88     118 ..     273     304 ..     259     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++l++++ +l+  ++  l+G+ G GKStL++ l +
   EHT98848.1  16 KALDNVSLQLDAgEVLSLCGENGSGKSTLMKILCG 50 
                  566777777877799***************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.2
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHH CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLina 118
                  + +++l+  l++ ++  ++G  G+G++  +  
   EHT98848.1 273 KRVNNLSFTLRKgEILGIAGLVGAGRTETVQC 304
                  56788889998889999999999999866655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00039      0.44      33      67 ..      16      50 ..       8     107 .. 0.82
   2 ?    0.2   0.0      0.56   6.3e+02      42      66 ..     282     306 ..     270     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00039
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLsk 67
                ++l+  +L+    ++L ++G  G gkst +k+L  
  EHT98848.1 16 KALDNVSLQLDAGEVLSLCGENGSGKSTLMKILCG 50
                47888889988899******************975 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.56
       Rad17  42 srkkriLLisGPsGCgkstvvkvLs 66 
                  rk +iL i+G  G g++ +v+ L 
  EHT98848.1 282 LRKGEILGIAGLVGAGRTETVQCLF 306
                 46678****************9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   2.3   2.1e-05     0.023       7     128 ..      30     196 ..      25     202 .. 0.69
   2 ?   -0.2   0.1      0.99   1.1e+03       6      25 ..     286     305 ..     282     309 .. 0.84
   3 ?   -2.3   0.0       4.3   4.8e+03      91     109 ..     368     387 ..     354     398 .. 0.63
   4 ?   -2.9   0.0       6.8   7.6e+03      92     127 ..     422     458 ..     407     460 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevvfvtlpsst.....sskdllrellral 64 
                 +l ++Ge G+GK+tl++ l   ++  ++  +                                    ++  ++  +l   +     + +  +++ll+ +
  EHT98848.1  30 VLSLCGENGSGKSTLMKILCGLYPHGEFEGQiqfsgdpiqaqtirdterkgiviihqelalvrqltvMENIFLGAELGRFGmvddeTMTLRCQQLLERV 128
                 789********************9887777799**********99999888888888888877776644444444444444444436666688888888 PP

      AAA_22  65 glelka.....erlsseell.ealeqalrarav.ielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                 +l+ +      e      l  ++l + +ra  + ++lli+DE    l+++e    L++++nl+++g++ i++
  EHT98848.1 129 KLNVSPdtrvgE----LGLGqQQLVEIARALNKqVRLLILDEPTSsLTEQETTVLLSIIHNLREHGIACIYI 196
                 877766533332....33333333333333333677******999884366666667777778888877765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.99
      AAA_22   6 gilvvtGesGtGKTtllrrl 25 
                  il + G +G+G+T +++ l
  EHT98848.1 286 EILGIAGLVGAGRTETVQCL 305
                 677799********999876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.3
      AAA_22  91 vielliiDEaqhlrs..eeal 109
                  ++l  iDEa  l +  ++a+
  EHT98848.1 368 SQRLSTIDEASEL-HaiNAAI 387
                 3567779999888.4344444 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 6.8
      AAA_22  92 ielliiDEaqh.lrseealeeLrsllnl.srkgvqliL 127
                 +++li+DE  + +    a +e+  l n   ++g+++i+
  EHT98848.1 422 PKILILDEPTRgI-DVGARQEIYVLINAlVQQGISVIV 458
                 5788888876666.333334444444444455665555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017       1.9      18      40 ..      22      49 ..       4      58 .. 0.73
   2 ?   -3.0   0.0         6   6.8e+03      26      43 ..     139     155 ..     123     175 .. 0.74
   3 ?    1.3   0.0       0.3   3.3e+02      11      39 ..     279     305 ..     268     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                H.....TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 18 l.....gdvilLeGdLGaGKTtlvrgla 40
                      g+v+ L G+ G+GK+tl++ l+
  EHT98848.1 22 SlqldaGEVLSLCGENGSGKSTLMKILC 49
                133344788***************9886 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6
                 ESTTSSHHHHHHHHHHHT CS
        TsaE  26 GdLGaGKTtlvrglakal 43 
                 G+LG G  +lv  +a+al
  EHT98848.1 139 GELGLGQQQLVE-IARAL 155
                 888888888774.44554 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.3
                 HHHHHHCHTEEEEEEESTTSSHHHHHHHH CS
        TsaE  11 gkklakalgdvilLeGdLGaGKTtlvrgl 39 
                   +l k  g+++ + G +GaG T  v+ l
  EHT98848.1 279 SFTLRK--GEILGIAGLVGAGRTETVQCL 305
                 344444..788999*********999876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00038      0.43       3      30 ..      31      58 ..      29      71 .. 0.80
   2 ?   -1.8   0.0       2.3   2.6e+03     114     157 ..     415     456 ..     363     462 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00038
                EEEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklp 30
                + l Ge+GsGK+tL++ l+ +  +g+ +
  EHT98848.1 31 LSLCGENGSGKSTLMKILCGLYPHGEFE 58
                6688***********9998776666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
                 CTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE--TCCHHHH CS
       NACHT 114 rkkllpeasllltvrpralrdleeqleeaivlevegfsesrrkq 157
                  k ll + ++l+   p++   +  + +++i++ +++++++ +  
  EHT98848.1 415 AKCLLLNPKILILDEPTRG--IDVGARQEIYVLINALVQQGISV 456
                 4444444444555555555..55566666667777766666655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.5    0.0051       5.7      14     149 ..      28     186 ..      18     197 .. 0.60
   2 ?    2.6   0.0     0.088        99     119     166 ..     419     460 ..     360     467 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0051
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS...................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet...................kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 g+ + +++e GsGK++ + i +   +y +                   ++++++ ++i+    +L++q l+ +++++  ++l    ++ +++ +   ++
  EHT98848.1  28 GEVLSLCGENGSGKSTLMKILCG--LYPHgefegqiqfsgdpiqaqtiRDTERKGIVIIHQELALVRQ-LTVMENIFLGAELGRFGMVDDETMTLRCQQ 123
                 44455788888888887555544..6665667777777777777776545555555555555566655.456666666556555555555555555555 PP

                 HHTTCSEEEEEHHHHHHHH.......HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddll.......stgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                 l ++v++ v+   r+ +l        +  +   +qvr+l+lDE    l ++    + +i+++l
  EHT98848.1 124 LLERVKLNVSPDTRVGELGlgqqqlvEIARALNKQVRLLILDEPTSSLTEQETTVLLSIIHNL 186
                 545555555555555553333222223333337999999999988888776666666666665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.088
                 CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlS 166
                 l + ++l+lDE  r  d g +++i  ++n+l q+         viv+S
  EHT98848.1 419 LLNPKILILDEPTRGIDVGARQEIYVLINALVQQ------GISVIVIS 460
                 667799***********************99322......22367666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0016       1.7       1      20 [.      30      49 ..      30      62 .. 0.88
   2 ?   -0.6   0.0       1.2   1.4e+03      86     108 ..     146     168 ..      68     197 .. 0.71
   3 ?   -1.1   0.0       1.7   1.9e+03      19      43 ..     218     242 ..     216     275 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
      AAA_33  1 lvllvGlpGsGKstlaerll 20
                ++ l+G +GsGKstl + l+
  EHT98848.1 30 VLSLCGENGSGKSTLMKILC 49
                5679***********98775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
      AAA_33  86 arflklarrlgvpvrivvvetde 108
                 ++++++ar l+ +vr+++++ + 
  EHT98848.1 146 QQLVEIARALNKQVRLLILDEPT 168
                 55555555555555555554443 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.7
      AAA_33  19 llkklgavllssdtlrrrlfgtdqq 43 
                 +++ ++a  ls+d+++++++g++ +
  EHT98848.1 218 HIATRPAAGLSEDDIITMMVGRELT 242
                 5566778899********9996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 3422.60
//
Query:       EHT98849.1  [L=388]
Description: membrane component of an ABC superfamily D-xylose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-45  154.9  49.4    2.2e-45  154.9  49.4    2.2  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.56   10.1   3.6        2.4    8.1   3.6    2.1  1  DUF1072       Protein of unknown function (DUF1072)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.29   2.6e+03      38      71 ..      32      40 ..      17      51 .. 0.52
   2 !  154.9  49.4   2.5e-49   2.2e-45       2     268 .]      57     378 ..      56     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.29
  BPD_transp_2 38 alGayvaalllalllsllllallvallvgaavgl 71
                  +lGa+                         ++ +
    EHT98849.1 32 MLGAI-------------------------VLIA 40
                  22221.........................1111 PP

  == domain 2  score: 154.9 bits;  conditional E-value: 2.5e-49
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgl 98 
                   ++nll+++ai +i+A+G+ +v+ i+ +i+l++g++m+l + +aa+  + l+++l+l+++v l++g+++g ++g+ v++ kv+++i+tl+++++++g+
    EHT98849.1  57 VSNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTIVVTLVLGLLLGTWNGWWVAYRKVPSFIVTLAGMLAFRGI 152
                   789*******************.***************999999999999999******************************************** PP

  BPD_transp_2  99 tlllltgitsgvkgqssvkellgfagallsflsaviv.......................................................llall 140
                   ++    git g++  ++ ++++++ + +l+ ++++ +                                                       + + +
    EHT98849.1 153 LV----GITDGTTVAPTSPAMSQIGQSYLPGGFGFGFgfiglalfilwqwrlrlrrqqlglaqpaatstvarqaitavlvlgaiwllndyrgVPTPV 245
                   **....99********************9999999889999******************************************************** PP

  BPD_transp_2 141 lvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgt 231
                   l+la +++ +rt fGr+++a+g+n +aar++Ginv r+kl++f+i g++ ++aG++l+ +lg+++p++g  ++++aiaa+v+Gg+      gs++g+
    EHT98849.1 246 LLLAGMFMATRTAFGRRIYAIGGNIDAARLSGINVARTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTslaggvGSVAGA 342
                   ************************************************************************************************* PP

  BPD_transp_2 232 viGaliigvvksllltllgiptelarvllgallilvl 268
                   v+Ga+i++ +++ +++++ +pt +++++ ga+l+l++
    EHT98849.1 343 VMGAFIMASLDN-GMSMMDVPTFWQYIVKGAILLLAV 378
                   ************.999******************986 PP

>> DUF1072  Protein of unknown function (DUF1072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.6   0.00027       2.4       6      29 ..     321     345 ..     317     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00027
     DUF1072   6 VIAvCvLalTvlag.igavagcCvG 29 
                  IA+Cv+  T lag +g vag  +G
  EHT98849.1 321 AIAACVIGGTSLAGgVGSVAGAVMG 345
                 6************998888886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2748.06
//
Query:       EHT98850.1  [L=391]
Description: xylose-binding DNA-binding transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-34  119.3   0.1    3.8e-34  118.4   0.1    1.5  2  Peripla_BP_3  Periplasmic binding protein-like domain
    4.8e-19   68.4   0.0    1.5e-18   66.8   0.0    1.9  1  HTH_18        Helix-turn-helix domain
    3.1e-17   62.2   0.1    1.1e-09   38.1   0.2    2.6  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    5.8e-10   39.2   0.0    8.4e-10   38.6   0.0    1.3  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.031   14.0   0.0      0.053   13.2   0.0    1.4  1  Peripla_BP_6  Periplasmic binding protein
      0.096   12.7   0.0       0.18   11.8   0.0    1.4  1  DUF4539       Domain of unknown function (DUF4539)


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         4   1.2e+04      69      87 ..      52      69 ..      20      71 .. 0.59
   2 !  118.4   0.1   1.3e-37   3.8e-34       3     166 .]     113     277 ..     111     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4
                  H..HHCC-SEEEEESSCCHHH CS
  Peripla_BP_3 69 l..klaalPtAviaasDelAl 87
                  +  +l+   ++via  D  A+
    EHT98850.1 52 IheWLG---DGVIADYDDSAI 69
                  223433...688888888776 PP

  == domain 2  score: 118.4 bits;  conditional E-value: 1.3e-37
                   HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC.-S.EEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   3 hLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaa.lP.tAviaasDelAlgvlqalrea 96 
                   hL+++G++r+af+g + ++g+++++ere +frq + +  +   +++++++ +++ ++a+++l    + +l++ +P t++ia +D+ A ++lqa+++ 
    EHT98850.1 113 HLKARGINRFAFYGLPASSGKRWAQERELAFRQRVMRERYMGVVYQGMETASENWQHAQNRL----AdWLQTlPPhTGIIAVTDARARHLLQACDHL 205
                   9*************99999****************888999999*********999999998....34555546667******************** PP

                   T--TTTTEEEEBSS--SCC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--.EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddsela.alssPplTtvrqpleelGraaaellldllegekappeqvllpp.elveReSt 166
                   ++ vPe+l vig+d++el+  ls+ +l++v q  +++G++aa+ll++ll+++  p +++l+pp +++ R+St
    EHT98850.1 206 KIPVPEKLCVIGIDNEELTrFLSRVALSSVVQGSRQMGYQAAKLLHRLLDKQVLPLQRILVPPvKVIARRST 277
                   *******************555555***********************************8888*******8 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0     5e-22   1.5e-18       3      80 ..     309     385 ..     307     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 5e-22
                 HHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   3 aalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a g+sr+ L+++f++++g t +++++r +le+A++lL+  ++ls+ ei   +G+ +l++F+  f+k + +tP+eyr+
  EHT98850.1 309 DAIGLSRSNLEKRFRDETGDTIHAMIHREKLEKAKELLA-GSSLSINEISQMCGYPSLQYFYSVFKKSYATTPKEYRQ 385
                 689*********************************997.5************************************7 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.2e-08   0.00019       4      42 .]     297     335 ..     294     335 .. 0.93
   2 !   38.1   0.2   3.8e-13   1.1e-09       7      42 .]     349     385 ..     346     385 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.2e-08
                 CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 n++ ++++e++ d+ g+Srs++ ++F+ etG t+++ ++
  EHT98850.1 297 NACKGIKVEQVLDAIGLSRSNLEKRFRDETGDTIHAMIH 335
                 77899**************************99999987 PP

  == domain 2  score: 38.1 bits;  conditional E-value: 3.8e-13
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 ++l+i++i++++g+ S +yF+ +Fkk +  tP++yr+
  EHT98850.1 349 SSLSINEISQMCGYpSLQYFYSVFKKSYATTPKEYRQ 385
                 78**********************************7 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.8e-13   8.4e-10      76     256 ..      73     256 ..      58     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.8e-13
                   HHHTT-EEEE....ESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH..-TTCEECCEEESTTT CS
  Peripla_BP_4  76 akaaGIpVva....fdsddapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke..ypgikivaevaganw 166
                   +++  +pVv     + ++  ++++ ++y+++dn a  e +   l+    ++   ++ l +s g + a+er+ +fr+      y g+ + +  ++a +
    EHT98850.1  73 LADVAVPVVGvggsYHRE--EDYPPVHYIATDNSALVESAFLHLKARGINR-FAFYGLPASSGKRWAQERELAFRQRVMRerYMGVVYQG-METASE 165
                   445558888844445555..9****************************99.999999****************9985554744555555.335567 PP

                   CHHHHHHHHHHHHH...TTTECEEEESSCCHHHCHHHHHHHTTT.TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 167 daekaqqaleallt...anpldgilaandgmaegalealeaagl.agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   + + aq++l+++l+   +    gi+a+ d+ a+  l+a     +  ++ +++ ++ ++e l++  +    ++v+q ++++gy+a++l+ +ll++
    EHT98850.1 166 NWQHAQNRLADWLQtlpP--HTGIIAVTDARARHLLQACDHLKIpVPE-KLCVIGIDNEELTRFLSRVALSSVVQGSRQMGYQAAKLLHRLLDK 256
                   88899*********6544..58*******************9995444.48888899999*999999999*********************986 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.053      81     162 ..      65     146 ..      50     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
                   HHHHHHHHHHHHT-EEEESS-HH.CCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCC CS
  Peripla_BP_6  81 vaaavaevlakdgvpvigpaglt.gekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaa 162
                   + +a++  la+  vpv+g++g+   e+ +p v +++ ++sa +++++ +l k +g+ ++a+ +   ++g+ +++  + a+++ 
    EHT98850.1  65 DDSAIQRSLADVAVPVVGVGGSYhREEDYPPVHYIATDNSALVESAFLHL-KARGINRFAFYGLPASSGKRWAQERELAFRQR 146
                   4578889999999*****88666379***********************5.559****************9999888888765 PP

>> DUF4539  Domain of unknown function (DUF4539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.1e-05      0.18      22      61 ..     318     357 ..     303     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
     DUF4539  22 alvtlkDptG.eidgtihrkvleeygkdlsvGavllLkqVs 61 
                 +   ++D+tG +i+++ihr+ le+  k+l +G+ l ++++s
  EHT98850.1 318 LEKRFRDETGdTIHAMIHREKLEKA-KELLAGSSLSINEIS 357
                 455789999868**********996.777889999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3011.98
//
Query:       EHT98851.1  [L=145]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-15   55.8   0.0    5.9e-15   55.5   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.4e-07   31.5   0.0    1.8e-07   31.2   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.9e-07   30.4   0.0    4.9e-07   30.1   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.1e-06   28.4   0.0    1.7e-06   27.9   0.0    1.3  1  FR47             FR47-like protein
     0.0026   17.8   0.0     0.0038   17.3   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
       0.02   15.0   0.5        2.4    8.3   0.0    2.1  2  WI12             Wound-induced protein WI12
       0.13   12.4   0.0       0.19   11.9   0.0    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.3e-18   5.9e-15      15     115 ..      28     132 ..      11     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2.3e-18
                     HHHHHHHHHHHHHHHSTTC.EEEE..EEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT CS
  Acetyltransf_1  15 pnedaseeefeesfsleae.gllv..aeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed 104
                     ++ d+s+    +  +l ++  l +  ae++g +iGf+ + +       ++v+y+e+l+V+++ rg G+G+aL+ a+ ++are g  k+++ v++ 
      EHT98851.1  28 HHLDESVTLSTWQRILSPDsALMCrlAEHNGSVIGFAICVIHEGtwVTRPVCYLEDLFVKENKRGVGAGKALIVAVCDEARELGWAKVYW-VTNE 121
                     44455555533333333443666688***********9999999998899***********************************99999.8899 PP

                     EHHHHHHHHHT CS
  Acetyltransf_1 105 ndaairlYekl 115
                     n++a+rlY kl
      EHT98851.1 122 NNPARRLYDKL 132
                     99******885 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     7e-11   1.8e-07      21     104 ..      38     132 ..      23     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 7e-11
  Acetyltransf_10  21 alrerie.egealllvaeeggkivGvi.el.rdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYek 103
                      ++++ ++ +++ ++ +ae +g+++G++  +  +g        +++ lfV+++ rg G gkaL+ av++ea++ g ++     n+++ a+++Y k
       EHT98851.1  38 TWQRILSpDSALMCRLAEHNGSVIGFAiCViHEGTwvtrpvcYLEDLFVKENKRGVGAGKALIVAVCDEARELGWAKvYWVTNENNPARRLYDK 131
                      5566663488899999*********9964434444899999***********************************9999999999******99 PP

  Acetyltransf_10 104 l 104
                      l
       EHT98851.1 132 L 132
                      6 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.9e-10   4.9e-07       7      72 ..      53     132 ..      24     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.9e-10
                     EEEETTEEEEEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHHH...TT..SE.EEEEEEEE..THHHHHHHHHHT CS
  Acetyltransf_7   7 VaeddgkivGfialslld........aeitrlaVdpeyrgkGiGraLlea...ae..kg.iileqlel..naekaikfYekl 72 
                     +ae++g ++Gf+++++++        ++++ l+V+++ rg G G+aL+ a   ++   g  +++  ++  ++++a+++Y kl
      EHT98851.1  53 LAEHNGSVIGFAICVIHEgtwvtrpvCYLEDLFVKENKRGVGAGKALIVAvcdEAreLGwAKVY--WVtnENNPARRLYDKL 132
                     69***********999999998888888888*****************9745511344421122..22223349*****986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.7e-10   1.7e-06      17      75 ..      74     132 ..      62     141 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 6.7e-10
                 EE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHH CS
        FR47  17 lrkdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyekl 75 
                 +++++ +l  l v+++ r+ G g+ l+ a+  e +e g   + +v  +N+p++rly kl
  EHT98851.1  74 VTRPVCYLEDLFVKENKRGVGAGKALIVAVCDEARELGWAKVYWVTNENNPARRLYDKL 132
                 678999****************************************************9 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-06    0.0038      24      58 ..      78     112 ..      55     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
  Acetyltransf_CG  24 vldfthTeVpeelrGkGiAkkLvkaalddareegl 58 
                      v  ++  +V+e  rG G +k+L+ a+ d+are g+
       EHT98851.1  78 VCYLEDLFVKENKRGVGAGKALIVAVCDEARELGW 112
                      56678889************************999 PP

>> WI12  Wound-induced protein WI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00096       2.4      11      43 ..      50      82 ..      40      93 .. 0.77
   2 ?    5.6   0.1    0.0065        17      25      49 ..      96     120 ..      83     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00096
        WI12 11 easfefkprsvdafgstviaeGtdetrklyWvh 43
                  ++  ++ sv  f  +vi eGt+ tr + ++ 
  EHT98851.1 50 MCRLAEHNGSVIGFAICVIHEGTWVTRPVCYLE 82
                5566667789999**************998875 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0065
        WI12  25 gstviaeGtdetrklyWvhaWtvkd 49 
                 g+++i+  +de+r+l W  ++ v++
  EHT98851.1  96 GKALIVAVCDEARELGWAKVYWVTN 120
                 78899999**********9998875 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.4e-05      0.19      66     135 ..      44     119 ..       7     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.4e-05
  Acetyltransf_6  66 aargalrlyvlrldgrpvAvalglrsgdrlyywlggydpe......laklspgllllweliedaaeeGlrrfdlgg 135
                     +++ al +  ++++g ++++a+++++++++    + y ++       +++++g+ l+  + ++a+e G +++ +++
      EHT98851.1  44 SPDSALMCRLAEHNGSVIGFAICVIHEGTWVTRPVCYLEDlfvkenKRGVGAGKALIVAVCDEARELGWAKVYWVT 119
                     3456778888999***************99876666666655444358********************88887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1189.47
//
Query:       EHT98852.1  [L=77]
Description: hypothetical protein CKS_1181 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 610.45
//
Query:       EHT98853.1  [L=59]
Description: hypothetical protein CKS_1180 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-06   26.9   0.0    5.3e-06   26.8   0.0    1.0  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.9e-10   5.3e-06      52      96 ..       6      51 ..       1      54 [. 0.85

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.9e-10
                T.CEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SS CS
        OsmC 52 k.giteirlkvevkipgadseeklkkllekaekrCpvsntlkngvk 96
                +  +t+i+lk+ v++ +  + +++++l+++a++ C+++n+l+ +v+
  EHT98853.1  6 RgHFTQITLKPLVTLRDPADAARAEALHHHAHDACFIANSLNFPVS 51
                2249*************9999********************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 499.17
//
Query:       EHT98854.1  [L=62]
Description: hypothetical protein CKS_1179 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-09   36.8   0.1      4e-09   36.5   0.1    1.2  1  YjfB_motility  Putative motility protein


Domain annotation for each model (and alignments):
>> YjfB_motility  Putative motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   2.2e-13     4e-09       4      57 .]       9      61 ..       6      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.2e-13
  YjfB_motility  4 lsmamsqaklqqqvgisVlKkalDtqeeqadqLlkmmemeqsvppnlGqniDvt 57
                   ls  + q +   +++ ++lKk+l+ q+++ ++L++ +  + +++p +G+ni++t
     EHT98854.1  9 LSAGLDQWQARGEANATLLKKTLNQQADTITTLVEGVT-ALPANPAVGRNINTT 61
                   89999999****************************99.99***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 510.01
//
Query:       EHT98855.1  [L=145]
Description: lysine exporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-19   68.5   8.0    6.4e-19   68.2   8.0    1.1  1  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   8.0   3.6e-23   6.4e-19       1     126 [.      12     139 ..      12     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 3.6e-23
        LysE   1 lslllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve...asl 96 
                 lsl l +G  n+++++ + +rg+ +g+ +++g  igd+++++l+l G+a+Ll+  +iv  i++ +Gg+ L+ + v++l +a+++ +    s+     sl
  EHT98855.1  12 LSLCLDIGIANIAMITLAMQRGYFQGFSLGIGTCIGDLFYAVLALAGMAVLLQ-FEIVRWIIWAGGGLLLTGFTVKMLMAAFSTVNDIDTSQVtvrLSL 109
                 58999************************************************.***************************998764333322465999 PP

        LysE  97 vkpflkglllslsNPkailfwlsvisalla 126
                  + f++g++l ls P ail+++ v++al++
  EHT98855.1 110 FREFRRGIVLALSSPTAILWFATVGGALIS 139
                 ***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1129.84
//
Query:       EHT98856.1  [L=182]
Description: hypothetical protein CKS_1176 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.058   13.2   0.0      0.078   12.8   0.0    1.3  1  zf-CHC2   CHC2 zinc finger


Domain annotation for each model (and alignments):
>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-06     0.078      26      94 ..      33     103 ..       9     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-06
     zf-CHC2  26 kkkgkdyvalCPFHeekt.psftvspekqfyyCfgCgag.GdaikFlmeieklsfveaveklakklglele 94 
                 k++++++v+  P  +++   sf+vs   ++++ f+ g g Gd ++    + ++  ++a++ +a++lgl+l+
  EHT98856.1  33 KRQAAEWVSRNPTRADRHaGSFSVSLVDGCWHDFATGDGgGDLVALGAYLWNVRQTDAARIVADRLGLNLP 103
                 89999********9998526***************99872577777778889999*********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1420.37
//
Query:       EHT98857.1  [L=178]
Description: AntA/AntB family antirepressor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-22   77.5   0.0    1.1e-21   77.1   0.0    1.2  1  AntA      AntA/AntB antirepressor


Domain annotation for each model (and alignments):
>> AntA  AntA/AntB antirepressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   6.4e-26   1.1e-21       1      68 []      66     140 ..      66     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 6.4e-26
        AntA   1 VsAreLhefLevkkdFskWikerikeygfvenkDfisv.......akkkegggrpskdYaltldmAKelaMvern 68 
                 VsA  Lh++L+v+++ ++Wik+ri+eygf+++ D+  v        ++ ++ ++ + dY ltld+AKelaMvern
  EHT98857.1  66 VSAAALHAALGVNSRLTDWIKRRIAEYGFIDGDDYQMVeilstssLSSAKSRQQVAHDYLLTLDTAKELAMVERN 140
                 89***********************************99999865333333435588*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1349.78
//
Query:       EHT98858.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98858.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98858.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98858.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98858.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98858.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98858.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98858.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98858.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98858.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98858.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98858.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98858.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98858.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98858.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98858.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98858.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98858.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2478.11
//
Query:       EHT98859.1  [L=57]
Description: hypothetical protein CKS_1172 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-09   37.2   0.1    2.1e-09   37.1   0.1    1.0  1  Phage_AlpA   Prophage CP4-57 regulatory protein (AlpA)
    3.3e-07   30.4   0.0    3.7e-07   30.2   0.0    1.1  1  HTH_17       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.014   15.5   0.0    1.2  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
      0.039   14.1   0.1       0.11   12.6   0.0    1.7  3  HTH_28       Helix-turn-helix domain
      0.044   13.6   0.0      0.051   13.3   0.0    1.2  1  MerR         MerR family regulatory protein
      0.046   13.4   0.0       0.25   11.1   0.1    1.8  2  HTH_Tnp_4    Helix-turn-helix of DDE superfamily endonuclease
      0.087   12.9   0.0        0.1   12.7   0.0    1.1  1  MerR_1       MerR HTH family regulatory protein
       0.15   11.9   0.0       0.26   11.2   0.0    1.4  1  HTH_23       Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   9.4e-13   2.1e-09       5      51 .]       2      48 ..       1      48 [. 0.96

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 9.4e-13
  Phage_AlpA  5 rlreVeqktglsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                r  +V+    +s+st+++++k+g+FPk+vkL+   + ++ + I++W+
  EHT98859.1  2 RPAQVMHHFQISESTLWSWVKKGKFPKPVKLSDGVTRFDIASIQAWL 48
                6689******************************************7 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.7e-10   3.7e-07       2      50 ..       1      51 [.       1      52 [. 0.89

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.7e-10
      HTH_17  2 ltveEaAelLgvsrstvyrlirrgelpaa.k.iGrrwriprsdleewlekr 50
                + +++++  + +s+st+  ++++g++p   k   +  r++ +++++wl  r
  EHT98859.1  1 MRPAQVMHHFQISESTLWSWVKKGKFPKPvKlSDGVTRFDIASIQAWLTDR 51
                67899*********************8778786666************876 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   6.5e-06     0.014      30      53 ..       4      27 ..       1      50 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.5e-06
                 HHHHHHHTS-HHHHHHHHH-HHHH CS
  HTH_Tnp_1_2 30 deiaeevgvsrsTlykWkkkkeFi 53
                 +++ ++ ++s+sTl+ W kk +F 
   EHT98859.1  4 AQVMHHFQISESTLWSWVKKGKFP 27
                 58899***************9995 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05      0.11      15      35 ..       3      23 ..       1      23 [. 0.90
   2 ?   -2.4   0.0       2.5   5.5e+03      11      20 ..      34      43 ..      31      46 .. 0.69
   3 ?   -2.0   0.0       1.9   4.2e+03      44      49 ..      48      53 ..      38      54 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
      HTH_28 15 vreaArelgisrrtvyrWikr 35
                 ++++++++is++t+ +W+k+
  EHT98859.1  3 PAQVMHHFQISESTLWSWVKK 23
                6899***************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
      HTH_28 11 aGhsvreaAr 20
                +G+++ ++A 
  EHT98859.1 34 DGVTRFDIAS 43
                6777777775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.9
      HTH_28 44 Lvprrr 49
                L +r++
  EHT98859.1 48 LTDRKG 53
                455555 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.051       3      32 ..       4      33 ..       2      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
                HHHHHHHTTTHHHHHHHHHTTSSTSEEETT CS
        MerR  3 gevAeltGvsprtLRyYEreGLipppeRte 32
                 +v + + +s +tL  + ++G++p+p++ +
  EHT98859.1  4 AQVMHHFQISESTLWSWVKKGKFPKPVKLS 33
                67888899******************9866 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.25      27      42 ..       8      23 ..       5      23 .. 0.92
   2 ?    0.1   0.0      0.31   6.9e+02      14      27 ..      30      43 ..      30      44 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
   HTH_Tnp_4 27 yrFgvsestvsrifhk 42
                + F++sest + +++k
  EHT98859.1  8 HHFQISESTLWSWVKK 23
                68***********986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.31
   HTH_Tnp_4 14 vyLRlnltyqdLay 27
                v+L  ++t +d+a 
  EHT98859.1 30 VKLSDGVTRFDIAS 43
                67888999999985 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.5e-05       0.1       2      42 ..       2      43 ..       1      48 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.5e-05
                EHHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHH CS
      MerR_1  2 sigevakilgvtthtlrywekegllkpkr.teggrryYtded 42
                +  +v   ++++ +tl  w k+g+++ +   + g  +++ + 
  EHT98859.1  2 RPAQVMHHFQISESTLWSWVKKGKFPKPVkLSDGVTRFDIAS 43
                667889999***************666665888888877555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.26      20      40 ..       3      23 ..       1      24 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
      HTH_23 20 vreIAreLgvsrrTvyrwlkr 40
                ++++  ++ +s++T++ w+k+
  EHT98859.1  3 PAQVMHHFQISESTLWSWVKK 23
                67888899***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 414.79
//
Query:       EHT98860.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-98  327.8   3.5    3.5e-97  325.3   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.5   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.034   13.7   2.1      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.037   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.067   11.7   7.7        0.1   11.1   7.7    1.2  1  FUSC             Fusaric acid resistance protein family
       0.13   12.6   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.28   10.8   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.28   10.9  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.78    8.9   2.7        1.2    8.4   2.7    1.1  1  TMPIT            TMPIT-like protein
        2.4    8.3   8.3        1.1    9.5   5.2    1.8  2  CREPT            Cell-cycle alteration and expression-elevate
        2.6    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.2    7.1   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  325.3   0.0  4.1e-100   3.5e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98860.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 325.3 bits;  conditional E-value: 4.1e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98860.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98860.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +++erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98860.1 380 GSPPDERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98860.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98860.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98860.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98860.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.5   0.0       1.8   1.5e+03     125     146 ..     351     384 ..     342     444 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT98860.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98860.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgsppD 384
                   6778888888888887766664444444444442 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHT98860.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT98860.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98860.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98860.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT98860.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98860.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98860.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98860.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT98860.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98860.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98860.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT98860.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT98860.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98860.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98860.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHT98860.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98860.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98860.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHT98860.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHT98860.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT98860.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98860.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98860.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98860.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                     1052  (0.0586759); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 3978.13
//
Query:       EHT98861.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98861.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 870.41
//
Query:       EHT98862.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98862.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98862.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98862.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98862.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 820.64
//
Query:       EHT98863.1  [L=372]
Description: site-specific recombinase, phage integrase family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-15   55.3   0.0    1.4e-14   54.3   0.0    1.5  1  Phage_integrase  Phage integrase family
    1.1e-05   25.7   1.6    6.6e-05   23.2   0.2    2.6  3  Arm-DNA-bind_3   Arm DNA-binding domain
     0.0098   16.1   0.1      0.038   14.3   0.1    2.0  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.3e-18   1.4e-14       2     169 ..     168     338 ..     167     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.3e-18
                      HHHHHHHHHHHHCCGC..HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTT CS
  Phage_integrase   2 vltedeverllaalee..slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaek 93 
                      +lt de+ ++++a++     + ++ l ++l++    R  El++  + ++dl++ v+++++++ K++ ++ +pl+  a+e+l+el s +     +
       EHT98863.1 168 WLTRDELIQFFQAMRMakGFSRENELTMKLILCLCCRKMELCGAPWAEFDLDEAVWRLPAERAKNGDAIDIPLPPPAVEWLRELHSIS----GG 257
                      89999999999999887667788889999999999*****************************************************....99 PP

                      TSBSSBET.....TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase  94 sellfask.....rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                      s+++++ +        +++++t+  a+ ++++e    + +t H++R+++ t+L+  gvd+ v ++ l+H+      iY+++
       EHT98863.1 258 SSWVLPARkmqhrMIPHIQESTLPVALAKVRREMPDVPTFTVHDFRRTARTHLAALGVDPVVGERCLNHRIKGVEGIYNRH 338
                      *****999887777778999999999***99999999********************************877766888776 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   1.1e-08   6.6e-05      39      73 ..      10      44 ..       4      45 .. 0.89
   2 ?   -3.8   0.0       2.9   1.7e+04      57      67 ..      84      94 ..      82      95 .. 0.84
   3 ?    0.4   0.0      0.14   8.4e+02      40      68 ..     292     318 ..     248     322 .. 0.54

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.1e-08
  Arm-DNA-bind_3 39 lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    +G+y ++sl++AR++ rel+a++a G+D a ek++
      EHT98863.1 10 IGSYSDLSLSKARAAVRELAARVALGHDVAGEKQK 44
                    6*****************************99996 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.9
  Arm-DNA-bind_3 57 lraliaqGiDP 67
                    lr++i++ i+P
      EHT98863.1 84 LRRRIDKDINP 94
                    79999999999 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.14
  Arm-DNA-bind_3  40 GrypavslaeARkkarelraliaqGiDPa 68 
                      + p+ ++ + R+ ar  +a    G+DP+
      EHT98863.1 292 PDVPTFTVHDFRRTARTHLAA--LGVDPV 318
                     445545666666555555543..388886 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   6.3e-06     0.038      27      52 ..      86     111 ..      84     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.3e-06
                      HHHTTTHHHHTTSSBGGG--HHHHHH CS
  Phage_int_SAM_3  27 siiknhIlPyFgniklkkItpadiqk 52 
                      + i++ I P++g++k+++++p++i  
       EHT98863.1  86 RRIDKDINPHIGSLKVEDVKPRHIDA 111
                      67999******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2894.31
//
Query:       EHT98864.1  [L=571]
Description: hypothetical protein CKS_1167 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-19   69.5   4.4    9.6e-19   67.5   4.4    2.1  1  DUF2326   Uncharacterised protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
        2.1    8.3   5.1        7.1    6.6   0.0    3.4  4  MtrG      Tetrahydromethanopterin S-methyltransferase, subuni


Domain annotation for each model (and alignments):
>> DUF2326  Uncharacterised protein conserved in bacteria (DUF2326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   4.4   1.1e-22   9.6e-19       4     137 ..     436     565 ..     426     567 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.1e-22
     DUF2326   4 elykekaallsikannkg.rlefeveiqtdestGikymkilcfDlallklakeekkvpkflvHDslfegvderqlaklleli.aevaeklgiQyivtln 100
                  ++ +k+++++i+an+k+  ++f+++i++d s+  ++ k++ +D++ll+++k+ +++p +l+HD++f+ vd+++l k l++  ++ +  ++ Qyi+tln
  EHT98864.1 436 YVFGNKKCSFEISANDKKsIVDFTLRIDDDGSHSNEREKVFFYDISLLLTEKTFRNHPGLLIHDNIFD-VDNDTLIKSLNFLaEKSSCLKDCQYILTLN 533
                 45578899********99899*****************************99999*************.***********99555666799******** PP

     DUF2326 101 kdklpkeeeeesklekdveknev.klsltDekdekLFg 137
                 +dkl+k +++  kl+ d+++++   l++++    +++g
  EHT98864.1 534 SDKLSKLDKK--KLKLDINEYKRiSLTKKN----RFLG 565
                 ****665554..457777777666788877....6665 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.024   2.2e+02      12      32 ..     103     123 ..      98     127 .. 0.84
   2 ?   -1.4   0.1      0.25   2.2e+03      12      27 ..     182     197 ..     179     200 .. 0.86
   3 ?    6.6   0.0   0.00079       7.1      12      33 ..     214     235 ..     208     238 .. 0.88
   4 ?   -3.3   0.0      0.98   8.8e+03      16      29 ..     334     347 ..     331     354 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.024
        MtrG  12 fnevkkrLdeieekvefvnsE 32 
                 f +++k  d i++ +ef ++ 
  EHT98864.1 103 FLNIEKNFDSIQDAIEFLTTK 123
                 77899************9765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.25
        MtrG  12 fnevkkrLdeieekve 27 
                 ++e+k+ ++ei++ v 
  EHT98864.1 182 YKEIKRLINEIDKSVK 197
                 99999999****9885 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.00079
        MtrG  12 fnevkkrLdeieekvefvnsEi 33 
                 ++++k+ L+ei+ +ve +nsE+
  EHT98864.1 214 ISKAKAELNEINSQVEIINSEM 235
                 5789999**************8 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.98
        MtrG  16 kkrLdeieekvefv 29 
                  + +++i+ k+  +
  EHT98864.1 334 SEEINDIDVKLKSA 347
                 45556666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3802.59
//
Query:       EHT98865.1  [L=319]
Description: hypothetical protein CKS_1166 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2534.03
//
Query:       EHT98866.1  [L=52]
Description: hypothetical protein CKS_1165 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 437.91
//
Query:       EHT98867.1  [L=274]
Description: putative head size determination protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0061   16.7   1.6      0.011   15.9   1.6    1.4  1  DUF2959      Protein of unknown function (DUF2959)
  ------ inclusion threshold ------
      0.083   11.8   1.4       0.12   11.4   1.4    1.3  1  DUF2891      Protein of unknown function (DUF2891)
       0.11   12.3   0.2       0.17   11.7   0.2    1.2  1  MOR2-PAG1_C  Cell morphogenesis C-terminal
       0.44    9.2   6.4       0.62    8.7   6.4    1.1  1  EVC2_like    Ellis van Creveld protein 2 like protein
          2    6.9   8.2        2.6    6.5   8.2    1.1  1  FUSC         Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> DUF2959  Protein of unknown function (DUF2959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.6     3e-06     0.011       4      79 ..      69     145 ..      66     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3e-06
     DUF2959   4 amEkvGvekrdilv.drVekardsqeeakeqfksALerfkavvefdggeLekeyeklnkeyeesekaaeevreriea 79 
                 +mE +  +k +  + + Ve+ r+sq +++++ ++  +rf++++e +gg++  e ++l+++y e +++a+e++  i +
  EHT98867.1  69 MMEWLEAKKAEAAArESVEALRQSQAQTEQAGQDNRTRFRELLEQNGGTVTPEMKALRAAYLEQQETATELAGLITQ 145
                 677777778777652579**************************************************999877765 PP

>> DUF2891  Protein of unknown function (DUF2891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.4   3.2e-05      0.12      76     149 ..       3      77 ..       1     116 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.2e-05
     DUF2891  76 desltaekiaaEvaylkkeekksferpYGwaWllkL.aaeleelddpeakewaealeplaeliverlkeflpklt 149
                 ++++t+e+i+a  +y+ +  ++s +     +Wl+kL +ael+e +++ ak++ +  +p  ++++++++e+l+  +
  EHT98867.1   3 QKQMTDEEIKATGQYVGQLVARSQKPLKDAGWLMKLpEAELAEQSAALAKSLPAGWQPRIQQLQKKMMEWLEAKK 77 
                 6889999999999999999988888888999*****668********************************8765 PP

>> MOR2-PAG1_C  Cell morphogenesis C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.9e-05      0.17      40     184 ..      46     195 ..      35     203 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
  MOR2-PAG1_C  40 vvevllksqpqkwegdfeglqalvlkGlrssetleatlellskLtklsdd.elvdssds.rllllilalLPrllqaleeke.....edqkvlevAenl 130
                    + l+ks p +w+ + + lq+ ++  l   ++ +a+ e ++ L + + + e  +++++ r+  l+  +   +  ++++ +     +++ ++e+A  +
   EHT98867.1  46 QSAALAKSLPAGWQPRIQQLQKKMMEWLEAKKAEAAARESVEALRQSQAQtEQAGQDNRtRFRELLEQNGGTVTPEMKALRaayleQQETATELAGLI 143
                  56789999999999999999999999999999999999999999888766467777777788888877766666666433342222345555555555 PP

  MOR2-PAG1_C 131 aalaeekglenLarvltsyakgrfrtkddflkqvvkalreayfpehesealvll 184
                  ++  +ek+l+ La v+ + a++ ++  +  +++ + al +++f  h +e+ +ll
   EHT98867.1 144 TQ--REKQLPGLADVTGQKAHAYITCHERIMDERIDALIDEFFILHGVELTSLL 195
                  55..6677***************************************9776665 PP

>> EVC2_like  Ellis van Creveld protein 2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.4   0.00017      0.62     201     282 ..      43     125 ..      35     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00017
   EVC2_like 201 fkkqllalekelkeeyerkmvaLaaec.nletrekleaehkkeeaekeeaeellkkasekellelssLLdklhkleqeeLqrl 282
                 + +q  al k l   ++ ++ +L++++ ++ + +k ea  +++ +++++ ++++++a + ++++ ++LL++  +  + e+++l
  EHT98867.1  43 LAEQSAALAKSLPAGWQPRIQQLQKKMmEWLEAKKAEAAARESVEALRQSQAQTEQAGQDNRTRFRELLEQNGGTVTPEMKAL 125
                 678999*****************9886266777999**********************************9988877777643 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.2   0.00072       2.6     238     330 ..      43     138 ..      35     165 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00072
        FUSC 238 larllarlraeeaaavpe.laallaelaal.eaaaaaealeaalaalrarlralrrale.adadtaalllarlaellaelaqllaslraleaaiaa 330
                 la++ a+l ++  a ++  +++l +++ ++ ea++a++a ++ ++alr+  +++++a + +++  ++ll ++  ++  e+ +l+a++ ++++ +++
  EHT98867.1  43 LAEQSAALAKSLPAGWQPrIQQLQKKMMEWlEAKKAEAAARESVEALRQSQAQTEQAGQdNRTRFRELLEQNGGTVTPEMKALRAAYLEQQETATE 138
                 5666666666666666666999********999999*********************996566666666777777777777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2127.13
//
Query:       EHT98868.1  [L=91]
Description: putative Ogr family transcription activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-15   56.9   3.8      2e-15   56.5   3.8    1.2  1  Ogr_Delta        Ogr/Delta-like zinc finger
     0.0012   18.9   1.8     0.0019   18.3   1.8    1.3  1  zf-GRF           GRF zinc finger
  ------ inclusion threshold ------
      0.013   16.0   0.4      0.013   16.0   0.4    1.6  2  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
      0.015   14.9   1.7          2    8.1   0.1    2.3  2  zf-tcix          Putative treble-clef, zinc-finger, Zn-bindin
      0.023   14.2   0.1       0.04   13.4   0.1    1.4  1  Mu-like_Com      Mu-like prophage protein Com
       0.13   12.8   3.5        4.1    8.1   0.6    2.5  2  zf-C2H2          Zinc finger, C2H2 type
       0.47   10.5   5.0        3.3    7.8   5.0    2.3  1  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma


Domain annotation for each model (and alignments):
>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   3.8   7.9e-19     2e-15       1      47 []       4      50 ..       4      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 7.9e-19
   Ogr_Delta  1 rCPhCgapaaartsrnlskdvreryyqCsnfeCgatfvaaeeierti 47
                +CP+Cg+ a++rts +  + v++  yqC+n++C++tf+a e++e++i
  EHT98868.1  4 KCPECGQVAHTRTSAYEAPSVKRTWYQCQNLDCSCTFTALESVEKII 50
                6*******************************************987 PP

>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.8   7.4e-07    0.0019       3      38 ..       5      40 ..       3      42 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.4e-07
      zf-GRF  3 Ck.cgrlavlltvrktgpNkGRkFYkCpkgkekqCgF 38
                C+ cg+ a ++t+  + p   R +Y+C + +  +C F
  EHT98868.1  5 CPeCGQVAHTRTSAYEAPSVKRTWYQCQNLDC-SCTF 40
                999**************************996.7988 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   0.4   5.2e-06     0.013       6      55 ..       3      52 ..       2      53 .. 0.80
   2 ?   -2.4   0.1       2.8   7.1e+03      36      42 ..      79      85 ..      73      89 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.2e-06
  Zn_ribbon_recom  6 lrCgeCGspmtrrkrk.....gkrhyYrCstyrrkgkkCsnhsireekleeavle 55
                     l+C eCG+  + r++       kr  Y+C++      +Cs++    e +e+++++
       EHT98868.1  3 LKCPECGQVAHTRTSAyeapsVKRTWYQCQNL-----DCSCTFTALESVEKIIMK 52
                     89*******999887644444445889**995.....888889999999999986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
  Zn_ribbon_recom 36 gkkCsnh 42
                     g+ C+ +
       EHT98868.1 79 GSACTRK 85
                     4345543 PP

>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00079         2      12      23 ..       4      15 ..       3      18 .. 0.81
   2 ?    6.1   0.2    0.0032       8.2      27      41 ..      31      45 ..      28      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00079
     zf-tcix 12 kCpkCGtyNGtR 23
                kCp+CG    tR
  EHT98868.1  4 KCPECGQVAHTR 15
                9*****876666 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0032
     zf-tcix 27 CkNkaCdqvfkkkdk 41
                C+N +C+  f ++++
  EHT98868.1 31 CQNLDCSCTFTALES 45
                *********998765 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.6e-05      0.04      24      43 ..       2      21 ..       1      27 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
  Mu-like_Com 24 tiKCPRCGtLnHlkaeslda 43
                  +KCP CG + H ++ + +a
   EHT98868.1  2 ALKCPECGQVAHTRTSAYEA 21
                 58***********9987665 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.012        31       2       9 ..       4      11 ..       3      17 .. 0.82
   2 ?    8.1   0.6    0.0016       4.1       1      15 [.      29      45 ..      29      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
                EETTTTEE CS
     zf-C2H2  2 kCpdCgks 9 
                kCp+Cg++
  EHT98868.1  4 KCPECGQV 11
                8*****76 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
                EEET..TTTEEESSHHH CS
     zf-C2H2  1 ykCp..dCgksFkrksn 15
                y+C   dC+ +F+  ++
  EHT98868.1 29 YQCQnlDCSCTFTALES 45
                9***********98766 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.0    0.0013       3.3       1      25 [.       4      36 ..       4      37 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
  DNA_ligase_ZBD  1 hCPvCGsavv.Ree.......geaiyRCtnlsC 25
                    +CP+CG+ +  R+            y C nl+C
      EHT98868.1  4 KCPECGQVAHtRTSayeapsvKRTWYQCQNLDC 36
                    6********999987766665577799999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 686.92
//
Query:       EHT98869.1  [L=241]
Description: putative head size determination protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   14.5   3.8      0.052   13.9   3.8    1.5  1  DUF4510   Domain of unknown function (DUF4510)
       0.19   11.9   1.3       0.34   11.0   1.3    1.4  1  DUF5542   Family of unknown function (DUF5542)


Domain annotation for each model (and alignments):
>> DUF4510  Domain of unknown function (DUF4510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.8   5.8e-06     0.052      25      81 ..      28      82 ..       2     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.8e-06
     DUF4510 25 vareLqalqeeLqeaaeaRRaawearvgglgqGpewsaarralqeaVaqeLaaLqls 81
                 ar +qa   e  e +++RRa+ ea +++  q  ew+a  r++  a + e+ aL++ 
  EHT98869.1 28 EARRVQAAAAENAETIRQRRAETEATANA--QNDEWRALFRDSSGAMTPEMRALRTE 82
                58999*********************998..999********************975 PP

>> DUF5542  Family of unknown function (DUF5542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   3.8e-05      0.34       3      34 ..      32      63 ..      30      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
     DUF5542  3 vdaaaadgrdGlreRrGlgeagrqqqnrevrp 34
                v+aaaa++ + +r+Rr  +ea  + qn e r+
  EHT98869.1 32 VQAAAAENAETIRQRRAETEATANAQNDEWRA 63
                689999*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2067.61
//
Query:       EHT98870.1  [L=890]
Description: hypothetical protein CKS_1161 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-98  329.7   0.2    2.8e-98  329.1   0.2    1.3  1  DUF927          Domain of unknown function (DUF927)
    5.1e-16   58.7   9.7    5.1e-16   58.7   9.7    2.7  3  Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
    4.6e-13   49.4   1.1    2.5e-12   47.0   0.1    2.7  2  Toprim_3        Toprim domain
    0.00082   19.8   0.0      0.003   18.0   0.0    1.9  1  Toprim_4        Toprim domain
     0.0029   17.1   1.7     0.0061   16.0   1.7    1.5  1  TF_Zn_Ribbon    TFIIB zinc-binding
     0.0034   17.3   1.0     0.0092   15.9   1.0    1.8  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
      0.009   16.4   0.0      0.023   15.1   0.0    1.8  1  Toprim_2        Toprim-like
  ------ inclusion threshold ------
      0.062   13.0   4.0       0.26   11.0   4.0    2.0  1  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII


Domain annotation for each model (and alignments):
>> DUF927  Domain of unknown function (DUF927)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.1   0.2  1.2e-101   2.8e-98       1     286 [.     330     612 ..     330     613 .. 0.97

  Alignments for each domain:
  == domain 1  score: 329.1 bits;  conditional E-value: 1.2e-101
      DUF927   1 FrldkeglyvlkkkkdkegkteekvvicspleisartrdekgeneglllewrdkdgkkkewvmpaellsgdgsellkeLldeGltviskna..rklLak 97 
                 Frl++e l++ k+ +++++++ ++v ic pl+++a+t+d++g+n+g+llew+d+ g++++w+mp+e+lsg+g+el++ Ll +Gl++is++   r++L++
  EHT98870.1 330 FRLTQEYLWYEKQVQRNGETEIQNVKICNPLRVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGSGEELRRVLLVNGLSYISTTGeaRARLME 428
                 899*******99999997766655*****************************************************************9999****** PP

      DUF927  98 ylqqlesplpratvvdrlGwhkdedvFvlgdevigesgekeivlqeekaaeeaysekGtldeWrrqiaklvegnpllilavsaAlaapLLkllgaeggg 196
                 y++ + +p++r+t+v+r+Gwh  ++v+vl+dev g+ ++  ++lq+ +++ ++++ +Gt++eWr+++a+++ gn+++++avs A+aapLL+l+g++ggg
  EHT98870.1 429 YISLC-KPERRVTCVSRTGWH--GQVYVLQDEVSGDGADG-VILQTTSVQGRDFRVSGTVEEWREHVARFCTGNSRVAFAVSLAFAAPLLRLVGMDGGG 523
                 *****.***************..***********988877.********************************************************** PP

      DUF927 197 lhlygeSstGKttalklAaSvwGnpeelvrswraTanglEglaaannDllLiLDEiseadprevgelvYmlanGqGkqRanrtgevrtsk 286
                 +hl geS++GKtt++k+A Sv+G+p+ ++++wraT n+lEg a+++nD+ ++LDEi+e+d re+g+++YmlanGqGk+Ra ++ge+rt k
  EHT98870.1 524 YHLKGESTDGKTTTMKAATSVCGGPD-YWQTWRATGNALEGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKGRAGTDGELRTRK 612
                 **************************.************************************************************986 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   9.7   2.3e-19   5.1e-16       1      38 []      32      68 ..      32      68 .. 0.97
   2 ?   -0.7   0.0      0.78   1.8e+03       8      19 ..     544     556 ..     543     563 .. 0.80
   3 ?   -2.5   0.1         3   6.7e+03      14      25 ..     795     808 ..     794     811 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 2.3e-19
                    EEEE--TTTT-TTTEEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon  1 gkhspCPvCGGrDrFrfddkdgrGtwfCrqCggggdgl 38
                    g+h+pCP CGG+DrFr dd +grGtw+C+qC g gdgl
      EHT98870.1 32 GRHGPCPECGGKDRFRMDDLEGRGTWICSQC-GRGDGL 68
                    69*****************************.****96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.78
                     TTT-TTTEE.ETT CS
  Prim_Zn_Ribbon   8 vCGGrDrFr.fdd 19 
                     vCGG D +  ++ 
      EHT98870.1 544 VCGGPDYWQtWRA 556
                     8***998887875 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
                     TEE.ETT.....S- CS
  Prim_Zn_Ribbon  14 rFr.fddkdgr.Gt 25 
                     rF  + d+++r G 
      EHT98870.1 795 RFAdWHDERNRpGN 808
                     8999****999665 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.86   1.9e+03      57      80 ..      80     107 ..      66     124 .. 0.65
   2 !   47.0   0.1   1.1e-15   2.5e-12       2      93 ..     209     304 ..     208     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.86
    Toprim_3  57 reaaeklaerleaagieavllep....a 80 
                 ++aa+++ae l+ + ++ v + p    a
  EHT98870.1  80 KAAAQAVAEVLDLREVQSVPVKParekA 107
                 3667777777777999999999954432 PP

  == domain 2  score: 47.0 bits;  conditional E-value: 1.1e-15
    Toprim_3   2 liivEGietaLsileartgaaviAllsaanlkaiawp...e.rgkrvviaaDnDaandGreaaeklaerleaagieavllep.aegeDwndvlqkeG 93 
                 ++i+EG++taL++ ++ t+ +v+A++sa+nl ++a +   + +  ++v+a DnD ++ G++  ++ ae++++a    v l+p + ++Dwnd+++++G
  EHT98870.1 209 AVITEGYATALTV-SQLTAGCVVAAISAGNLPNVAQAlraRwPEVKIVVAGDNDFQDGGENPGKAFAEKAARAVSGWVSLPPgEIKADWNDFHREHG 304
                 58***********.89*******************99875445556799******99988888888888888777899999988888********99 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06     0.003       3      77 ..     209     280 ..     208     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
    Toprim_4   3 iiiVEgyaDvlalekagiknvvavlg.galspldgirpeklktenlveaekkvkevilaldgDa......eGeataerlael 77 
                 ++i+Egya++l +++     vva    g+l++++++ +++ ++           ++++a+d+D       +G+a ae++a++
  EHT98870.1 209 AVITEGYATALTVSQLTAGCVVAAISaGNLPNVAQALRARWPE----------VKIVVAGDNDFqdggenPGKAFAEKAARA 280
                 79**************77777776555***99*****888888..........89************************995 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.7   2.7e-06    0.0061       3      26 ..      37      63 ..      35      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
                  ETTTTCEE.CHEE..TSTTCEEESSSS CS
  TF_Zn_Ribbon  3 CPnCgstn.lveD..pergelvCtdCG 26
                  CP+Cg+++ +  D  + rg+ +C+ CG
    EHT98870.1 37 CPECGGKDrFRMDdlEGRGTWICSQCG 63
                  ******99887777************9 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.0   4.1e-06    0.0092      18      45 ..      35      64 ..      29      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
  Zn_Tnp_IS1595 18 gfvCPhCgsrkayrikt...rglfqCkeCrk 45
                   g+ CP Cg++  +r+ +   rg + C+ C++
     EHT98870.1 35 GP-CPECGGKDRFRMDDlegRGTWICSQCGR 64
                   45.*******7777777777*********96 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05     0.023       1      90 []     210     300 ..     210     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1e-05
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalteaalkllery.pekkvvlalDnD..kaGrkaakrlaellreagvrekirelp..egk.Dwnell 90 
                 v++Eg+  al + ql       vva  + ++ ++ ++ l+++ pe k+v+a DnD  + G++  k +ae++  + v  ++  +p    k Dwn+++
  EHT98870.1 210 VITEGYATALTVSQLTAG---CVVAAISAGNLPNVAQALRARwPEVKIVVAGDNDfqDGGENPGKAFAEKAA-RAVSGWVSLPPgeI-KaDWNDFH 300
                 689***********9996...77777777677777777777768899********65558888888888885.44577888888533.35****86 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.0   0.00012      0.26       3      28 ..      33      63 ..      32      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
     zf-RRN7  3 kgppCgvCgc.rsftldd....GfyyCrrCh 28
                ++ pC++Cg+ ++f+ dd    G+++C  C+
  EHT98870.1 33 RHGPCPECGGkDRFRMDDlegrGTWICSQCG 63
                678*******88******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6772.98
//
Query:       EHT98871.1  [L=125]
Description: hypothetical protein CKS_1160 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-14   51.6   0.1    9.1e-14   51.2   0.1    1.1  1  DUF5375   Family of unknown function (DUF5375)


Domain annotation for each model (and alignments):
>> DUF5375  Family of unknown function (DUF5375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1   5.1e-18   9.1e-14       5      98 ..       9     107 ..       5     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 5.1e-18
     DUF5375   5 lspalraalyrravacawlt..lc..eeqkrya.sltlarleraietelegfylrqhgrergreiacalledlleagplkaapslsflgqvvmdelcgr 98 
                 ++ +l +alyrra+a aw +  l     + r +  +t++r+e ai+  leg  + ++g+++g   a all d++e   l a p l+  g  vm  l + 
  EHT98871.1   9 FPAELTTALYRRAIASAWRAkhLAdtGSEMRGPhRMTVERIEMAIALHLEGTMVNEYGEAQGTAAALALLTDMVEPTLLTAPPVLTPRGCEVMAGLYAT 107
                 56789*************652233113445555169*********************************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1007.16
//
Query:       EHT98872.1  [L=92]
Description: hypothetical protein CKS_1159 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 836.10
//
Query:       EHT98873.1  [L=118]
Description: hypothetical protein CKS_1158 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.086   12.5   0.0    2.2  3  DUF4222   Domain of unknown function (DUF4222)


Domain annotation for each model (and alignments):
>> DUF4222  Domain of unknown function (DUF4222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.8e-06     0.086       3      37 ..       5      41 ..       3      47 .. 0.83
   2 ?   -1.6   0.0      0.11     2e+03      27      49 ..      42      64 ..      33      66 .. 0.59
   3 ?   -0.6   0.0     0.059   1.1e+03      26      31 ..      92      97 ..      88      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.8e-06
     DUF4222  3 iqpgdiYrDkrGvvVkvisvden..rVtFrRdGYehp 37
                +q+g ++ ++ G++V+v + ++    V +  + ++h+
  EHT98873.1  5 PQHGERWQHSQGWTVTVMRLSAApfSVACANPEFSHE 41
                799****************998877777777777666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.11
     DUF4222 27 VtFrR..dGYehpcvaplerFnkeF 49
                V +r   dG     +apl  F + +
  EHT98873.1 42 VLYRYdsDG--QVTSAPLTWFLESY 64
                555542234..45556666666655 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.059
     DUF4222 26 rVtFrR 31
                 Vt+rR
  EHT98873.1 92 SVTYRR 97
                7****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 932.04
//
Query:       EHT98874.1  [L=406]
Description: putative integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-15   57.3   0.0    3.2e-15   56.3   0.0    1.5  1  Phage_integrase  Phage integrase family
    1.9e-12   47.4   0.3    1.5e-11   44.5   0.3    2.2  2  Arm-DNA-bind_3   Arm DNA-binding domain
     0.0019   18.4   1.6     0.0064   16.7   0.2    2.6  2  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   5.4e-19   3.2e-15       2     169 ..     214     382 ..     213     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 5.4e-19
                      HHHHHHHHHHHHCCGC..HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTT CS
  Phage_integrase   2 vltedeverllaalee..slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaek 93 
                      +l e+e+  l+ a++     + ++ + ++ll+    R  El++ r++d+dl+ g++++  +++K++ +  +pls+ a ++lkel + +     +
       EHT98874.1 214 FLSEEEITLLFRAMKIakGFSRQNEITFKLLLMLCCRKMELCAARWEDFDLDAGIWHL--KNTKNGDNLDIPLSSLAIKWLKELKDLS----LN 301
                      7888999999888888655677788889******************************..***********************99999....99 PP

                      TSBSSBET.....TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase  94 sellfask.....rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                      s+++++ +        ++ ++t+  a+ +++ + g  +++t H++R+++ + L+  gvd+ v ++ l+H+      iY+++
       EHT98874.1 302 SDWVLPARkiqnrMIPHIAESTLPVALAKLKPHMGNIENFTIHDFRRTARSYLASLGVDPVVAERCLNHRIKGVEGIYNRH 382
                      ******9988887778999**************99989*******************************876666777765 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3   2.5e-15   1.5e-11       1      73 [.       4      90 ..       4      91 .. 0.87
   2 ?    0.1   0.0      0.19   1.1e+03      45      71 ..     341     365 ..     304     366 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 2.5e-15
  Arm-DNA-bind_3  1 LTdkaikaladsd.kklprd......GLglrvtps.Gaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    L+d +ik++  s+ +    +      GL+l+ ++      +++ry          +G+y+++sla+AR++arel a++a G D a ek++
      EHT98874.1  4 LSDIQIKTWLRSQeRF---EgrsdgnGLYLCYRKEfSIPKWRFRYSyggkaramwIGSYGDLSLAKARERARELSARVALGYDVAGEKQE 90
                    6788999988555332...2445799******99987779*****9*******888*******************************997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.19
  Arm-DNA-bind_3  45 vslaeARkkarelraliaqGiDPaeek 71 
                      ++ + R+ ar ++a +  G+DP+ ++
      EHT98874.1 341 FTIHDFRRTARSYLASL--GVDPVVAE 365
                     56666666666666655..99998765 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   1.1e-06    0.0064      27      54 ..     132     159 ..     128     162 .. 0.89
   2 ?   -1.6   0.1      0.56   3.4e+03      26      36 ..     308     318 ..     284     324 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
                      HHHTTTHHHHTTSSBGGG--HHHHHHHH CS
  Phage_int_SAM_3  27 siiknhIlPyFgniklkkItpadiqkfq 54 
                      + i++ I+P++gnik+++++p di +  
       EHT98874.1 132 RRIEKDIKPHIGNIKVEDVKPGDIDRML 159
                      6799********************9854 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.56
                      HHHHTTTHHHH CS
  Phage_int_SAM_3  26 ksiiknhIlPy 36 
                       + i+n+++P+
       EHT98874.1 308 ARKIQNRMIPH 318
                      34556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3500.34
//
Query:       EHT98875.1  [L=287]
Description: YicC family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-43  148.9   1.3    4.1e-43  147.4   0.0    2.2  2  YicC_N        YicC-like family, N-terminal region
    9.7e-35  118.4   6.5    2.3e-34  117.2   6.5    1.7  1  DUF1732       Domain of unknown function (DUF1732)
  ------ inclusion threshold ------
      0.029   13.9   0.8      0.029   13.9   0.8    1.8  2  DDE_Tnp_IS66  Transposase IS66 family
       0.37   10.8   7.1    1.6e+02    2.2   7.1    2.7  1  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
        1.4    9.5   5.4        3.8    8.0   1.1    3.2  2  NPV_P10       Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> YicC_N  YicC-like family, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.0   1.1e-46   4.1e-43       1     150 [.       2     153 ..       2     154 .. 0.93
   2 ?   -0.6   0.9      0.47   1.7e+03      87      87 ..     212     212 ..     157     284 .. 0.55

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 1.1e-46
      YicC_N   1 ikSMTGfgraeae.eegkitveikSvNsRfldlslrlpeelraleeeirelikerlsRGkvevsvsleseeeeekalkvneellkaylealkelaeelg 98 
                 i+SMT+++r e + + g++ +e++SvN+R+l+  +rlpe++r le+ ire+i++rl+RGk+e+++++e++  ++ +l +ne+l+k++++a+++++ +++
  EHT98875.1   2 IRSMTAYARREIKgDWGSAAWELRSVNQRYLETYIRLPEQFRGLEPMIRERIRQRLTRGKIECNLRFEADPGAQGELMLNESLAKQLVQAANWVKLQTD 100
                 89**********95559****************************************************999**********************88887 PP

      YicC_N  99 aeelslaellrlpgvlee.eeeedeleeallealeealealvemRerEGeaLk 150
                 +  ++  ++lr+pgv+ + e++ d+++++l +al+ al++++++Re+EG+aLk
  EHT98875.1 101 EGVINPLDILRWPGVMAApEQDLDAINTQLIQALDGALDDFIAARESEGSALK 153
                 8999************52244444479*************************8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.47
      YicC_N  87 l 87 
                 +
  EHT98875.1 212 F 212
                 1 PP

>> DUF1732  Domain of unknown function (DUF1732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   6.5   6.4e-38   2.3e-34       1      85 []     203     287 .]     203     287 .] 0.99

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 6.4e-38
     DUF1732   1 qevallaekldisEElvRlkshlkelrelleeeesvGrkLdFllQElnReanTigskandleitklvvelKseiekirEqvqNie 85 
                 qe++++a+++d++EEl+Rl++h+ke+ ++l+++e+vGr+LdF++QE+nRe nT++sk+ ++eit+ ++elK++ie++rEq+qNie
  EHT98875.1 203 QELVMMAQRFDVAEELDRLDAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEITNSAIELKVLIEQMREQIQNIE 287
                 79**********************************************************************************8 PP

>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.8     8e-06     0.029     193     264 ..     139     208 ..     117     211 .. 0.82
   2 ?   -1.4   0.1      0.36   1.3e+03      27      65 ..     246     284 ..     230     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8e-06
  DDE_Tnp_IS66 193 eerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpv 264
                   ++  a+r++e   l a +e+ le+  ++v++    +++ + ++ ++e+l+  led +v+++NN+ E+++ ++
    EHT98875.1 139 DDFIAARESEGSALKALIEQRLEAVTHEVSKVR--AQLPDVIKWQRERLIAKLEDAEVQLENNRLEQELVMM 208
                   567788999999999999999998776666655..788999999**********************998665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.36
  DDE_Tnp_IS66  27 eeilarlGvelsrgtlanwvkraaelleplvealkaall 65 
                    + ++r+  +l+ +++ + + ++a +l+ l+e+++++++
    EHT98875.1 246 MQEFNRESNTLASKSINAEITNSAIELKVLIEQMREQIQ 284
                   566777777888888888888899999999999999886 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   7.1     0.046   1.6e+02      94      94 ..     196     196 ..     114     287 .] 0.55

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.046
  Baculo_PEP_C  94 l 94 
                   l
    EHT98875.1 196 L 196
                   1 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.59   2.1e+03      43      51 ..     122     130 ..     116     144 .. 0.54
   2 ?    8.0   1.1    0.0011       3.8      16      57 ..     156     195 ..     150     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.59
     NPV_P10  43 kLdaqsaqL 51 
                  Lda+++qL
  EHT98875.1 122 DLDAINTQL 130
                 455555444 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
     NPV_P10  16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletk 57 
                 ++++++a+ ++v +v+++lpdv  ++ + +++ a+L++ e +
  EHT98875.1 156 IEQRLEAVTHEVSKVRAQLPDV--IKWQRERLIAKLEDAEVQ 195
                 578999***************5..455555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2070.86
//
Query:       EHT98876.1  [L=146]
Description: hypothetical protein CKS_1155 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-37  124.9   0.0    1.1e-36  124.7   0.0    1.1  1  DUF3574   Protein of unknown function (DUF3574)
  ------ inclusion threshold ------
      0.058   13.6   0.6      0.058   13.6   0.6    2.1  2  MLTD_N    MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> DUF3574  Protein of unknown function (DUF3574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.0   1.3e-40   1.1e-36       1     103 []      45     146 .]      45     146 .] 0.98

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 1.3e-40
     DUF3574   1 rteLyfGlsrpdggkevseaefqrFvdeevtPrFpdGltvldakGqwrdetgalirekskvlillhpdteakearieeireaYkerfqqesVlrvdspa 99 
                 +t+L+fGls+p+ g++vs  ++ +Fvd+evtPrF++Gl+v+da+Gqw++e+g+l+reksk l+l+++ + ++++r+e++r++Yk++f qesV+rvd pa
  EHT98876.1  45 QTTLWFGLSKPQ-GGNVSALDWMNFVDKEVTPRFRSGLSVYDAQGQWLGENGQLAREKSKALVLIYQFDSDSNSRVEALRARYKKQFGQESVMRVDTPA 142
                 689********9.55************************************************************************************ PP

     DUF3574 100 kvsF 103
                 ++sF
  EHT98876.1 143 CISF 146
                 **99 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   6.5e-06     0.058      23      34 .]       9      20 ..       3      20 .. 0.91
   2 ?   -1.5   1.0      0.34   3.1e+03       2      10 ..      28      36 ..      23      38 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.5e-06
      MLTD_N 23 laaaalLaGCQS 34
                l +++lL+GCQS
  EHT98876.1  9 LILSLLLVGCQS 20
                6899*******9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.34
      MLTD_N  2 Spdyrkpsv 10
                +p++r+++v
  EHT98876.1 28 PPSTRPVPV 36
                788999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1127.73
//
Query:       EHT98877.1  [L=394]
Description: nucleoside permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-60  202.7  13.6    5.6e-60  202.7  13.6    1.9  2  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin
    4.6e-16   59.2   6.9    4.6e-16   59.2   6.9    4.3  5  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin
    1.7e-06   28.2   3.7    1.7e-06   28.2   3.7    3.4  4  Gate            Nucleoside recognition


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.49   2.9e+03      84     104 ..      81     101 ..      34     141 .. 0.66
   2 !  202.7  13.6   9.4e-64   5.6e-60       1     207 []     193     393 ..     193     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.49
                     T-TT--HHHHHHHHHHHHHHH CS
  Nucleos_tra2_C  84 gleelslelilgyvfaplafl 104
                     g+++  l +i+  v+ p+ f+
      EHT98877.1  81 GMSQQGLAFIFLGVLCPIIFI 101
                     355556666666666666664 PP

  == domain 2  score: 202.7 bits;  conditional E-value: 9.4e-64
                     HHHHHHHHHHHHHHHHHHHHS---S-..........---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--HHHHHH CS
  Nucleos_tra2_C   1 yllaAsvmsapaalaiskllvPeteesktkkkeekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgsgleelslelilg 95 
                     y++aA +++++++++i ++++P + +++++   +k +e+++++e+++e++l+g+k+a++i+amli+f+al+a+inal++ l     + s++++lg
      EHT98877.1 193 YVVAALLLNMFSTFIILSIINPGKGRNEQAIPLDKLHEDQSFFEMLGEYILAGFKVAMIILAMLIGFIALIAAINALFATL----FGYSFQQLLG 283
                     89**********************998888899999999****************************************99....378******* PP

                     HHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGSSS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHHHHHHHHHH CS
  Nucleos_tra2_C  96 yvfaplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkkkgelserseliatyaLcgFanfssigiqiGglgalaperrkdiaklglkal 190
                     yvf+p+a+l+G+p +dal++gs+++tKlv+nefva++eL+k++  + +++r   i++++L++Fanf+sigi+ G++++l++++ ++++++g+k++
      EHT98877.1 284 YVFYPFAWLIGIPATDALQAGSIMATKLVANEFVAMIELKKIA--AGMTPRGLGILSVFLVSFANFASIGIVAGAIKGLNEQQGNVVSRFGWKLV 376
                     *****************************************98..8************************************************* PP

                     HHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_C 191 laGtlasllsAaiaGll 207
                     +++tl+sllsAa+aGl+
      EHT98877.1 377 YGSTLVSLLSAAFAGLF 393
                     ***************97 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   6.9   7.7e-20   4.6e-16       2      74 .]      10      82 ..       9      82 .. 0.98
   2 ?   -2.9   0.1       1.9   1.1e+04      64      71 ..      84      91 ..      83     106 .. 0.65
   3 ?    2.2   0.2     0.047   2.8e+02      18      41 ..     187     210 ..     174     242 .. 0.86
   4 ?   -1.0   3.4      0.46   2.8e+03      35      63 ..     248     277 ..     234     286 .. 0.56
   5 ?   -3.1   0.0       2.1   1.3e+04      21      37 ..     372     388 ..     369     391 .. 0.55

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 7.7e-20
                    HHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG CS
  Nucleos_tra2_N  2 GllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvFGsl 74
                     l+v++++a+l+S++rk+i++r +i  ++++ +l++f+l+   g +++  +++++++ll fa +G++FvFG++
      EHT98877.1 10 ALVVIFALALLVSHDRKRIRLRFIIQLIVVEAALGWFFLHSASGLALVGTVGHFFETLLRFAAQGTEFVFGGM 82
                    799********************************************************************85 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                    HHHHHHHH CS
  Nucleos_tra2_N 64 kaGasFvF 71
                    ++G +F+F
      EHT98877.1 84 QQGLAFIF 91
                    45555555 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.047
                     GG--HHHHHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_N  18 kainwrtVigglllQfvlAlfvlk 41 
                     + i  ++V+++lll+++  +++l 
      EHT98877.1 187 SMIEAKYVVAALLLNMFSTFIILS 210
                     6789999******99999888886 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.46
                     HHHHHHTSHHHH.HHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N  35 lAlfvlktpagr.dvfkalsdlvqalldfa 63 
                     +A+++l + +g+ ++++a++ l+++l++++
      EHT98877.1 248 VAMIILAMLIGFiALIAAINALFATLFGYS 277
                     455555555544123344555555555544 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 2.1
                     -HHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N  21 nwrtVigglllQfvlAl 37 
                      w++V g  l+ ++ A+
      EHT98877.1 372 GWKLVYGSTLVSLLSAA 388
                     56666665555555444 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.93   5.6e+03       8      34 ..      37      67 ..      27      80 .. 0.60
   2 !   28.2   3.7   2.9e-10   1.7e-06       2     110 ..      92     190 ..      91     192 .. 0.93
   3 ?   -2.1   0.0      0.74   4.4e+03      88      99 ..     197     208 ..     193     242 .. 0.62
   4 ?   -0.6  11.0      0.27   1.6e+03       6     108 ..     250     356 ..     245     360 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.93
        Gate  8 illasiliwflss....ssllgrigkllepv 34
                i++  +l wf+ +      l+g +g ++e +
  EHT98877.1 37 IVVEAALGWFFLHsasgLALVGTVGHFFETL 67
                5555555565555544445555555555555 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.9e-10
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfap...lgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytp 97 
                 l ++  i+++s+li++l++  +l  + ++++ ++++   +g+ ++ +a+ +l++g++++ ++++ +              +d p+ +l ++  ++++t+
  EHT98877.1  92 LGVLCPIIFISALIGILQHWRILPLLIRVVGTLLSKvngMGKLESFNAVSTLVLGQSENFIAYKGI-------------LADIPPRRLYTMAATAMSTV 177
                 678899******************************85555***********************99.............7899**************** PP

        Gate  98 cvatlavivrelg 110
                 ++++++++++++ 
  EHT98877.1 178 SLSIVGAYMSMIE 190
                 ********99876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.74
        Gate  88 fllfvllytpcv 99 
                 +ll+++++t  +
  EHT98877.1 197 ALLLNMFSTFII 208
                 333333333222 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.27
        Gate   6 piillasiliwflss...........ssllgrigkllepvfaplg..qeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpks.alafll 90 
                  iil+++i    l +           +s+ + +g ++ p+   +g    +  +a   + t ++a+e v+ +  +         ++   tp+   +  ++
  EHT98877.1 250 MIILAMLIGFIALIAainalfatlfgYSFQQLLGYVFYPFAWLIGipATDALQAGSIMATKLVANEFVAMIELKK--------IAAGMTPRGlGILSVF 340
                 45555555444444456669999999**************999***9999999999999*********9986555........3477777775555566 PP

        Gate  91 fvllytpcvatlavivre 108
                 +v++++  +a+++++++ 
  EHT98877.1 341 LVSFAN--FASIGIVAGA 356
                 666655..7777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2783.66
//
Query:       EHT98878.1  [L=238]
Description: ribonuclease PH [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-23   83.8   0.0    2.6e-23   83.0   0.0    1.3  1  RNase_PH        3' exoribonuclease family, domain 1
    4.4e-11   42.6   0.4    7.6e-11   41.9   0.4    1.4  1  RNase_PH_C      3' exoribonuclease family, domain 2
  ------ inclusion threshold ------
       0.18   12.3   0.1         34    5.0   0.0    2.4  2  BrnA_antitoxin  BrnA antitoxin of type II toxin-antitoxin sys


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   4.3e-27   2.6e-23       1     129 [.      10     140 ..      10     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 4.3e-27
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C.......S...HHHHHHHHHHHHHHCCTC-CCGC CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasger....rregrpsdeeielsrlleralrpsillekk 95 
                 ++R++++  +  ++a+GS+++e+G+tkvl++ t++  + p++ + + +g++++e+ + p ++++r      +g+++ ++ e++rl+ r+lr+ + l   
  EHT98878.1  10 QVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATVDEGV-PRFLKGQGQGWVTAEYGMLPRSTHSRmareAAKGKQGGRTLEIQRLIARSLRAAVDLTML 107
                 57**********************************99.6666566679****************998744589999*******************999 PP

                 CTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCT CS
    RNase_PH  96 pkstididitvlssdggslldalinaaslALada 129
                  ++ti +d+ v+++dg ++  a+i++a++ALada
  EHT98878.1 108 GEYTITLDCDVIQADG-GTRTASITGACVALADA 140
                 99**************.****************8 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.4   1.3e-14   7.6e-11       1      65 [.     157     222 ..     157     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.3e-14
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAk 65 
                 ++v+av+vg+v+++ ++D+ + E++ +e d+++++ ++++ + ++ + ++  ++ e+ll+ + lA 
  EHT98878.1 157 GMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEpFSHEELLALLALAR 222
                 58*********************************************99999**********9996 PP

>> BrnA_antitoxin  BrnA antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0057        34      34      60 ..      34      60 ..       4      61 .. 0.82
   2 ?    5.0   0.0    0.0057        34      24      50 ..      94     121 ..      68     121 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0057
  BrnA_antitoxin 34 stKkkvtlRLDadVleaFkatGkgwQt 60
                    +tK   t  +D+ V  ++k +G+gw t
      EHT98878.1 34 ETKVLCTATVDEGVPRFLKGQGQGWVT 60
                    688899999****************66 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0057
  BrnA_antitoxin  24 argrpkrplestKk.kvtlRLDadVlea 50 
                     + ++++++++ t     t+ LD+dV++a
      EHT98878.1  94 IARSLRAAVDLTMLgEYTITLDCDVIQA 121
                     55556666655555578********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1673.12
//
Query:       EHT98879.1  [L=213]
Description: orotate phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-11   44.4   0.1    1.7e-11   43.9   0.1    1.3  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1   9.6e-16   1.7e-11      12     130 ..      47     160 ..      38     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 9.6e-16
                   EEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS......TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHH CS
  Pribosyltran  12 ldavarlaaeileeyngkpdvvvgiargGvpfakiladeL......evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgT 102
                   +   +++a+ ++++ +   d+++g+a++G+p+a+ +a +L      +vp+++ rk+ ++++ ++  +          ++p   kV +VDD+++ G++
    EHT98879.1  47 ALLGRFYAQALVDS-GIDFDLLFGPAYKGIPIATTTAVALadhhdrDVPYCFNRKEAKDHGEGGLLV----------GSPLQGKVMLVDDVITAGTA 132
                   45567788888888.********************************************99998886..........78999*************** PP

                   HHHHHHHHHCC-BSEEEEEEEEE-HHHH CS
  Pribosyltran 103 llaalelLkekgpeevriavlvdkpate 130
                   +++ ++++ ++++   ++  ++d+ ++ 
    EHT98879.1 133 IRESMDIINAHDASLAGVLISLDRQERG 160
                   **************99999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1589.67
//
Query:       EHT98880.1  [L=198]
Description: HTH-type transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-08   34.5   0.0    2.2e-08   33.7   0.0    1.4  1  TetR_N         Bacterial regulatory proteins, tetR family
     0.0051   17.0   1.7     0.0092   16.2   0.4    1.9  2  TetR_C_6       BetI-type transcriptional repressor, C-termina
     0.0067   17.2   0.6       0.24   12.2   0.0    2.5  2  TetR_C_15      Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.023   14.9   0.5        6.6    7.0   0.0    3.0  3  TetR_C_16      Tetracyclin repressor-like, C-terminal domain
      0.043   13.7   0.2       0.11   12.4   0.2    1.7  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.12   10.7   0.2       0.11   10.7   0.2    1.0  1  DUF390         Protein of unknown function (DUF390)
       0.13   11.2   0.2       0.28   10.1   0.1    1.5  1  Seadorna_VP6   Seadornavirus VP6 protein


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   8.7e-12   2.2e-08      11      46 ..      26      61 ..      15      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 8.7e-12
                HHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N 11 erGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                  G ++ t++++A+ +Gvs++alYr+FpsK  +++ 
  EHT98880.1 26 SDGSQRITTAKLAANVGVSEAALYRHFPSKTRMFDS 61
                5678899************************99986 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.63   1.6e+03      51      74 ..      12      32 ..       5      42 .. 0.52
   2 !   16.2   0.4   3.6e-06    0.0092       3      99 ..      86     182 ..      84     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.63
                HHHHHHHHHHHHHTTSCTTSTHHH CS
    TetR_C_6 51 rsnlrallaelaegglradadaea 74
                r+++ ++la+ +e    +d   + 
  EHT98880.1 12 REEILQALAQMLE---SSDGSQRI 32
                5666666666666...33333333 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHH CS
    TetR_C_6   3 erlraileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerlaAlidGLwlraalapeelda 99 
                 +rlr i+  +l   ++++  l+  l   a    +++l+ + +++ +r+  +lr++++e    +g+    d  + A++l Al++GL  r + +  ++++
  EHT98880.1  86 ARLRLIVQLILGFGERNPG-LTRILTGHALMFEQDRLQGRINQLFERIEVQLRQVMRERKMrEGEGFQTDETLLASQLLALCEGLLSRYVRSEFRFSP 182
                 7999999999998888885.6667888899999************************766665566666999*************9999998887776 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.075   1.9e+02      42      73 ..      10      41 ..       6      47 .. 0.83
   2 !   12.2   0.0   9.5e-05      0.24       6      87 ..      88     175 ..      85     182 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.075
   TetR_C_15 42 aleqriaealaalLarrrpelppedlelaafv 73
                + +++i +ala++L++     + ++++laa v
  EHT98880.1 10 NRREEILQALAQMLESSDGSQRITTAKLAANV 41
                5689999*******999988888888888865 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.5e-05
   TetR_C_15   6 ldalvdallaahrenpalrrvlleeapslgel...elvealeqriaealaalLarrrpel...ppedlelaafvaveaveallhlale 87 
                 l+ +v+  l + ++np+l r+l++ a + ++     +  +l +ri+ +l++++++r+ +    +++d  l+a  +++++e+ll ++++
  EHT98880.1  88 LRLIVQLILGFGERNPGLTRILTGHALMFEQDrlqGRINQLFERIEVQLRQVMRERKMREgegFQTDETLLASQLLALCEGLLSRYVR 175
                 7899********************9976665500455666666777788888887764331114566666666666666666666665 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.018        45      38      68 ..       5      35 ..       2      44 .. 0.85
   2 ?    7.0   0.0    0.0026       6.6      24      76 ..      46      99 ..      39     100 .. 0.90
   3 ?   -0.3   0.0       0.5   1.3e+03      57      73 ..     182     198 .]     157     198 .] 0.76

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
                HHHHHHHHHHHHHHCTTTS-STTHHHHHHHH CS
   TetR_C_16 38 ellrefleeqvlaplaarlggpdaelRaalv 68
                +++++  +e++l++la+ l+ +d  +R++ +
  EHT98880.1  5 KVVKRNRREEILQALAQMLESSDGSQRITTA 35
                677888899*****************98765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0026
                HHHHHH--------HHHHHHHHHHHHHHCTTTS-ST.THHHHHHHHHHHHHHHH CS
   TetR_C_16 24 lallrsalsseeaaellrefleeqvlaplaarlggp.daelRaalvasqllGla 76
                +al r   s+ +  + l ef+e+ +++++   l+++ +   R  l++ ++lG++
  EHT98880.1 46 AALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEkETMARLRLIVQLILGFG 99
                678888888888899999****************99999*************85 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.5
                 -STTHHHHHHHHHHHHH CS
   TetR_C_16  57 ggpdaelRaalvasqll 73 
                 + +d ++R  l+a+ql+
  EHT98880.1 182 PTADFDTRWPLIAAQLV 198
                 34588999999999986 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.2e-05      0.11       8      35 ..      15      49 ..      13      50 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
  HTH_AsnC-type  8 ILeaLqed.......aRisyaeLAervGlSestvl 35
                   IL+aL +         Ri+ a+LA+ vG+Se++  
     EHT98880.1 15 ILQALAQMlessdgsQRITTAKLAANVGVSEAALY 49
                   6666666666666778***************9975 PP

>> DUF390  Protein of unknown function (DUF390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   4.4e-05      0.11     514     592 ..       2      84 ..       1     152 [. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.4e-05
      DUF390 514 aeakaasr.qreealearataleerarakeidladreaavairevtlaaheaaca.eeesalrlredalaereral..eeaea 592
                 ae+k   r +ree l+a a  le   +++ i  a   a v + e++l  h  + +   +s + + ed+l  r   +  +e e+
  EHT98880.1   2 AEKKVVKRnRREEILQALAQMLESSDGSQRITTAKLAANVGVSEAALYRHFPSKTrMFDSLIEFIEDSLITRINLIlkDEKET 84 
                 5667666625799************************************9876551568899999999998866542233333 PP

>> Seadorna_VP6  Seadornavirus VP6 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00011      0.28      69     124 ..     127     180 ..     108     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
  Seadorna_VP6  69 ekvelmdaqfdrigkimdkmrepmlfkrdeielhgdllarvegllriknerseief 124
                   +  e ++ q+ ++ +   kmre   f+ de  l  +lla  egll  +  rse  f
    EHT98880.1 127 QLFERIEVQLRQVMR-ERKMREGEGFQTDETLLASQLLALCEGLLS-RYVRSEFRF 180
                   445555555555443.369*************************96.567888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1512.40
//
Query:       EHT98881.1  [L=151]
Description: deoxyuridinetriphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-41  140.4   0.0    2.8e-41  140.2   0.0    1.0  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0   1.5e-45   2.8e-41       3     129 .]      17     149 ..      15     149 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 1.5e-45
                 CTBEBESSTT-SSEEEE-SSSEEEET..TEEEEEEEEEEEE--T.TEEEEEEE-HHHHHHHEEEEE...EEEETTBTSEEEEEEEE-SSS-EEE-TT-E CS
     dUTPase   3 aeiptrkspesAgyDlsaakdltvkp..getvlvptdisiklpd.glaalilpRSglaakglivvp...gvidsdyrGevkvvlfnltkkdvkikkgdR 95 
                 +++pt+++p+sAg+Dl+a+ + +++   g+t+l+pt+++i+++d +laa+ilpRSgl +k++iv++   g+id+dy+G+++v+++n+++++++++ gdR
  EHT98881.1  17 FPLPTYATPGSAGLDLRACIEDVMEIapGTTTLIPTGLAIHIADpNLAAVILPRSGLGHKHGIVLGnlvGLIDADYQGQLMVSVWNRGQESFTLQPGDR 115
                 689***************9998776666*********************************************************************** PP

                 EEEEEEEEBECGEEEEESSTTTESSBTTXTTTTX CS
     dUTPase  96 iAqLifariltaeleevetlkatergeggfgssg 129
                 +AqL+f+++++ae+++v++++a+ rgeggfg+sg
  EHT98881.1 116 MAQLVFVPVVQAEFNLVDEFDASLRGEGGFGHSG 149
                 ********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1148.64
//
Query:       EHT98882.1  [L=406]
Description: 4'-phosphopantothenoylcysteine decarboxylase/FMN-binding phosphopantothenoylcysteine synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-74  249.1   1.8    2.6e-74  249.1   1.8    2.1  2  DFP           DNA / pantothenate metabolism flavoprotein
    4.1e-44  150.1   0.1      9e-44  149.0   0.1    1.6  2  Flavoprotein  Flavoprotein
  ------ inclusion threshold ------
      0.012   15.0   0.3      0.024   14.0   0.3    1.5  1  PALP          Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.5     0.045   2.7e+02      35      95 ..      25      95 ..      14     132 .. 0.71
   2 !  249.1   1.8   4.4e-78   2.6e-74       2     185 ..     188     371 ..     187     372 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.045
                HHHHHHHTT-EEEEEE-S..-SS---TT-EEEE.--SHHHHHHHHHHHH.......TT-SEEEE---S--E CS
         DFP 35 lAeaaaarGaeVtlvsgp..vsletpegvevvk.vesaeemleaveeal.......keadivimaAAvaDy 95
                l +++++rGa+V++   +   +  tp +++ v+ +   +++l+ + ea+       k ad+++ a A aD 
  EHT98882.1 25 LVRRLRDRGADVRVMMTEgaKAFITPLSLQAVSgYPVFDDLLDPAAEAAmghielaKWADLIVLAPATADL 95
                66778899999988876631344456555433335556666655554443333443666999999999986 PP

  == domain 2  score: 249.1 bits;  conditional E-value: 4.4e-78
                 TT-EEEEEES-EEEECCTTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS---TT-EEEE--SHHHHHHHHHHHHTT-SEEEE---S--EEES-- CS
         DFP   2 egkkvlvtaGpTrEaiDpVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsletpegvevvkvesaeemleaveealkeadivimaAAvaDyrpkea 100
                 ++ ++++taGpTrEaiDpVR+isN+SSGkmG+a+A+aaa+rGa+Vtlvsgpv+l+tp+gv++v+v+sa em++av  ++++++i+i++AAvaDyr  e 
  EHT98882.1 188 QHLNIMITAGPTREAIDPVRYISNHSSGKMGFAIAAAAAKRGARVTLVSGPVALPTPAGVKRVDVTSALEMQAAVIGEINAQHIFIASAAVADYRAIEI 286
                 6789*********************************************************************************************** PP

                 -----------..----EEE---HHHHHHHC-S.S-EEEEEEE-SS-HHHHHHHHHHHTT-SEEEEEEGGGTTGGG-SS-EEEEE CS
         DFP 101 aeeKikkeeeeeeltleleknpdilaelaekkkkkqllvGFaaeteellenareklerkgldlivaNdvskeeagfgsdenevtl 185
                 a+eKikk++++e+++l+l knpdi+a +a+ +++++++vGFaaet++++e+ar+k++rk+ldli+aNdvsk+++gf+sd+n+++l
  EHT98882.1 287 ADEKIKKQDDDEKVSLQLIKNPDIVAGVAALTQSRPFVVGFAAETQNVEEYARKKRARKNLDLICANDVSKAGHGFNSDTNALHL 371
                 *****************************9*99************************************************9987 PP

>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   0.1   1.5e-47     9e-44       1     157 [.       7     180 ..       7     181 .. 0.96
   2 ?   -3.3   0.0       1.1   6.7e+03       4      25 ..     271     292 ..     269     305 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 1.5e-47
                   EEEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS..................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHT CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaa..............redpilhielrrwadllviaPasantlakian 83 
                   kk+llg++G++aa+k++el+++L+++g++v+v++t+ Ak fi+  +l+l+a               e  + hiel++wadl+v aPa+a+ +a+i +
    EHT98882.1   7 KKVLLGVSGGIAAYKTPELVRRLRDRGADVRVMMTEGAKAFIT--PLSLQAvsgypvfddlldpaAEAAMGHIELAKWADLIVLAPATADLIARITA 101
                   79*****************************************..77777788************99****************************** PP

                   T--SSHHHHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHHH.T.....................GHHHHHHHHHHCHH CS
  Flavoprotein  84 GiadnlltlilratakkpiliaPamnpamyenpqtlknlekle.egvtvikPse.....gdigkgkmaeieeivgkildk 157
                   G+a++l+t+ ++ata +p+ i+Pamn +my+  +t++nl +l+ +g  +++P++     gdig+g+m ++ +iv+  +++
    EHT98882.1 102 GMANDLVTTAVLATA-APVAIVPAMNQQMYRAAVTQENLIRLQaRGLLIWGPDSgsqacGDIGPGRMLDPLAIVDHAVQW 180
                   ***********8877.**************************55*********889*******************99875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
                   EEEE-SSCGGGCHHHHHHHHHH CS
  Flavoprotein   4 llgiTGsvaaikalellekLkk 25 
                   +++++ +va + a+e+ ++ +k
    EHT98882.1 271 IFIASAAVADYRAIEIADEKIK 292
                   5788899999999988875444 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   4.1e-06     0.024      59     144 ..     210     315 ..     191     320 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-06
                 EEEBSSHHHHHHHHHHHHHT-EEEEE.......EETTS-H........HHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHH......STTCEE--TTTS CS
        PALP  59 veassGNhgralAaaaallGlkvtiv.......vpadasp........ekvallrllGaevvevggdydeavaaaaelaae......gegaylvsqfdn 136
                    ssG +g a+Aaaaa+ G +vt+v        pa+++          ++a + + +a+ +++ +    a  +a e+a e      +++ + ++  +n
  EHT98882.1 210 SNHSSGKMGFAIAAAAAKRGARVTLVsgpvalpTPAGVKRvdvtsaleMQAAVIGEINAQHIFIAS-AAVADYRAIEIADEkikkqdDDEKVSLQLIKN 307
                 5689**********************8888866555555333333333666666666666666622.22222223344444444456677777777778 PP

                 HHHHHHHH CS
        PALP 137 ptviegyg 144
                 p++++g +
  EHT98882.1 308 PDIVAGVA 315
                 88887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3280.75
//
Query:       EHT98883.1  [L=218]
Description: DNA repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-43  146.3   0.1    5.5e-43  145.8   0.1    1.2  1  RadC      RadC-like JAB domain
     0.0015   18.3   0.0     0.0025   17.6   0.0    1.4  1  Prok-JAB  Prokaryotic homologs of the JAB domain


Domain annotation for each model (and alignments):
>> RadC  RadC-like JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.1   6.2e-47   5.5e-43       1     121 [.      97     216 ..      97     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.8 bits;  conditional E-value: 6.2e-47
                 -SSHHHHHHHHTTTSS-TTS-EEEEEEE-TTSBEEEEEEEEESTT-GGGCSHHHHHHHHHHTT-SEEEEEEE-TTS--S--HHHHHHHHHHHHHHHHHT CS
        RadC   1 lsspedvaeylkeeladleqEefvvllLdsknrliadeelseGtlnstlvdprevfkealklnAaavilaHnhPsgdlepSeeDieltkrlkealkllg 99 
                 ++sp+++ +yl++ la++e+E+fvvl+Ld+++r++  +e+++G++ns++v+pre+++ealk nAaa+i+aHnhPsg +epS++D+++t +++ea++ll+
  EHT98883.1  97 IDSPAATRQYLQTLLARQEREVFVVLFLDNQHRVLMAREMFSGSINSVEVHPREIVREALKINAAALIVAHNHPSGIAEPSQADRDITLKICEACRLLN 195
                 67999**********9999******************************************************************************** PP

                 -EEEEEEEEESSE.EEETCCCT CS
        RadC 100 iellDhiIigdeeeyySfaeeg 121
                 i+llDh++ig+++  +Sf e+g
  EHT98883.1 196 IRLLDHLVIGHGQ-SVSFVERG 216
                 **********666.8***8876 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.8e-07    0.0025      49     104 ..     141     204 ..      98     215 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-07
    Prok-JAB  49 ipdpedslarlkfearerglevvgiwHSHpggsarPSetDrrdaaalar........vkallii 104
                 i + e + +++ +ea + +   + ++H Hp g a+PS++Dr    ++++        +  +l+i
  EHT98883.1 141 INSVEVHPREIVREALKINAAALIVAHNHPSGIAEPSQADRDITLKICEacrllnirLLDHLVI 204
                 223333333333378888899999*****************98888777666666653345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1599.35
//
Query:       EHT98884.1  [L=78]
Description: 50S ribosomal subunit protein L28 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-25   89.1   1.9    1.7e-25   88.9   1.9    1.0  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   1.9   9.7e-30   1.7e-25       1      60 []       3      62 ..       3      62 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 9.7e-30
                   ---TTT------------S-..-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--.. CS
  Ribosomal_L28  1 rvCeltGkkpqfGnnvshsknkTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidkk 60
                   rvC++tGk+p++Gnn+sh+ n TkR+++PNl+++r+w+e+++r+v+++vs k++R idkk
     EHT98884.1  3 RVCQVTGKRPVTGNNRSHAMNATKRRFLPNLHSHRFWVESEKRFVTLRVSVKGMRIIDKK 62
                   8*********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 604.86
//
Query:       EHT98885.1  [L=55]
Description: 50S ribosomal subunit protein L33 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-19   67.6   0.9      1e-18   67.5   0.9    1.0  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.9   5.8e-23     1e-18       1      47 []       7      53 ..       7      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 5.8e-23
                   .EEEEEET......EEEEETT..--S--EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33  1 ekvtLeCtecksrnYtttknkkntperLelkKYcprcrkhtlhkEtK 47
                   ek++L+++    + Ytttknk+++pe+LelkK++p++r+h+++kE+K
     EHT98885.1  7 EKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 53
                   69******766666*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 495.94
//
Query:       EHT98886.1  [L=269]
Description: formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-31  108.5   0.0    5.1e-31  107.7   0.0    1.4  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
      1e-27   95.9   0.0    1.8e-27   95.2   0.0    1.4  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    4.2e-10   39.3   6.3    7.2e-10   38.5   6.3    1.4  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
      0.007   16.5   0.8      0.012   15.7   0.8    1.4  1  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 


Domain annotation for each model (and alignments):
>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   1.1e-34   5.1e-31       1     116 []       1     114 [.       1     114 [. 0.92

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 1.1e-34
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTSTHHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS..........TTE CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrgspaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllikeaeeepp..kht 93 
                     MPElpEVet rrg+++hl+g++i ++ v +++ lr+  ++   al+++ + sv+rr+Kylllel  ++++++hlgm+G+l++   +ee p  kh+
      EHT98886.1   1 MPELPEVETSRRGIEPHLVGQTILHAVV-RNARLRWPVSNEILALSDQPVLSVQRRAKYLLLEL-PHGWIIIHLGMSGSLRV--LPEELPaaKHD 91 
                     **************************99.9******444445579*******************.78*************99..566666699** PP

                     EEEEEEGGGEEEEEEETT---EE CS
  Fapy_DNA_glyco  94 kvrlelddgtelaFvDpRrfGrv 116
                     +v+l +++g+ l+++DpRrfG +
      EHT98886.1  92 HVDLVMSNGKVLRYTDPRRFGAW 114
                     *********************87 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   3.9e-31   1.8e-27       1      91 [.     129     219 ..     129     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 3.9e-31
                 ---BTTSTTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTTGCCS CS
        H2TH   1 LgpeplseaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgksgist 91 
                 Lgpeplse f+ d+l e+ + k++ ik++L+D+k+v+G+GNiya+E+Lf a+i P+r+a sls+ e++ l+++ik+vl ++ie g++++++
  EHT98886.1 129 LGPEPLSEMFSGDYLFEKSRGKRTVIKQWLMDNKVVVGVGNIYASESLFTAGILPDRAAMSLSHDEAAFLANTIKAVLLRSIEQGGTTLRD 219
                 8**********************************************************************************99998875 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   6.3   1.6e-13   7.2e-10       1      29 [.     241     269 .]     241     269 .] 0.99

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.6e-13
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   GepC+ C+++i++ ++++rsty+Cp+Cq+
    EHT98886.1 241 GEPCRACGTPIVSGKHGQRSTYWCPNCQH 269
                   9***************************8 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.8   2.8e-06     0.012      15      40 .]     241     268 ..     240     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.8e-06
  Auto_anti-p27  15 aetCpvCgvPLmrdr..kggkvyCvaCd 40 
                    +e C  Cg+P++  +  ++ ++ C++C+
     EHT98886.1 241 GEPCRACGTPIVSGKhgQRSTYWCPNCQ 268
                    789************9989999*****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2347.93
//
Query:       EHT98887.1  [L=159]
Description: phosphopantetheine adenylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-21   75.5   0.0    5.3e-21   75.3   0.0    1.0  1  CTP_transf_like  Cytidylyltransferase-like
    1.4e-05   24.8   0.0    1.7e-05   24.6   0.0    1.2  1  Citrate_ly_lig   Citrate lyase ligase C-terminal domain


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0     6e-25   5.3e-21       1     142 [.       6     134 ..       6     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 6e-25
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltrevlkklkpdklylvigadv 93 
                      +++GtFDpi+lGH++++ +a+++++  l+v+++ ++++k    pl++++eR++  ++a ++ ++v +v + +l  ++ + ++++  +lv+g ++
       EHT98887.1   6 IYPGTFDPITLGHIDIVTRAAQMFDR-LVVAIAASPSKK----PLFTLDERVALAQQAtAHLPNVDVVGFSDLMANFARAQQAN--VLVRGLRA 92 
                      699***********************.***999998888....99***************************************..******** PP

                      HHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  94 ledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      ++df  ++e++    n++l    ++     v+l++++  ++iSs+ ++e
       EHT98887.1  93 VSDF--EYEMQLARMNRHLLPTLES-----VFLMPSEGFSFISSSLVKE 134
                      ****..****************999.....9999999999*****9987 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.9e-09   1.7e-05       9     106 ..      12     113 ..      10     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.9e-09
  Citrate_ly_lig   9 nPftlGhryLvekaakendvvhlfvvke..dkslfsyeerlklvkkGikdlknvtlhegsdYlis..ratfPsYflkeqeevaesqaelDlklfk 99 
                     +P tlGh  +v +aa+  d + + +      k lf+ +er++l ++ +++l nv ++  sd +    ra   +  ++  ++v +++ e+ l+ ++
      EHT98887.1  12 DPITLGHIDIVTRAAQMFDRLVVAIAASpsKKPLFTLDERVALAQQATAHLPNVDVVGFSDLMANfaRAQQANVLVRGLRAVSDFEYEMQLARMN 106
                     69*******************9999876225668***********************99999865115556667777777777777777776666 PP

  Citrate_ly_lig 100 eriakal 106
                     +++ ++l
      EHT98887.1 107 RHLLPTL 113
                     6666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1371.49
//
Query:       EHT98888.1  [L=259]
Description: lipopolysaccharide core biosynthesis glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-16   60.6   0.0    2.2e-16   60.1   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    6.8e-06   26.5   0.1    2.6e-05   24.7   0.0    2.0  2  Glyco_tranf_2_4  Glycosyl transferase family 2
    1.2e-05   25.4   0.0    1.4e-05   25.1   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    0.00087   18.8   0.0     0.0016   18.0   0.0    1.3  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   4.9e-20   2.2e-16       1     132 [.       9     129 ..       9     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 4.9e-20
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      svv+++ Ne+++l+ +l+s+        +eiiv+D gStD+t ++++++     +  v++ +e +G+++ + ++ + a+gd il +DaD  ++p
       EHT98888.1   9 SVVMIAKNEAALLPDCLASVSWA-----DEIIVLDSGSTDDTLSLAQQA-----GAQVFQATEWQGYGKQRQRAQSFASGDMILMIDADERVTP 92 
                      8********************99.....*********************.....9*************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrv 132
                      +  + + + le+ +++  +++  r++   +++ r++++
       EHT98888.1  93 ELRQAIEQVLEA-QPGPTVYSLSRSNLFLGRFMRHSGW 129
                      855555555555.8877888887777777777777765 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.8e-09   2.6e-05       1      93 [.      15      99 ..      15     102 .. 0.78
   2 ?   -1.5   0.0      0.81   3.6e+03      43      68 ..     167     192 ..     145     203 .. 0.65

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.8e-09
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvvpdsrslr 93
                     +nea++Lp +la   ++ +d+i+v+d +stD+t  + ++ + +++++ ++ +++   q+++ + +    a +d +l++DaDE ++ + +++++
       EHT98888.1 15 KNEAALLPDCLASV-SW-ADEIIVLDSGSTDDTLSLAQQ-AGAQVFQATE-WQGYGKQRQRAQSF----ASGDMILMIDADERVTPELRQAIE 99
                     7***********99.77.8**************997665.7888887776.76555555555544....467**********88876655555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.81
  Glyco_tranf_2_4  43 vkllhvdksyederrqvellkallar 68 
                      +++l++++ +  +r q ++ +a +++
       EHT98888.1 167 LQHLTCRDLMVFQRKQLAYAEAWAQE 192
                      56666665555556665555554443 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.1e-09   1.4e-05       3     122 ..       7     113 ..       5     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.1e-09
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      +l+v+  + ne++ l ++l+s++     ++e++v + +s+++tl+ a++       ++ +v + ++  g +gk r  ++a + +++d++l++D+
       EHT98888.1   7 RLSVVMIAKNEAALLPDCLASVSW----ADEIIVLDSGSTDDTLSLAQQ-------AGAQVFQATEWQG-YGKQR--QRAQSFASGDMILMIDA 86 
                      477777788999999999999995....58***************9998.......3667777777556.67766..8999999********** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqff.ltpkvgavgt 122
                      D +v P++ +++ q++ ++p++++   
       EHT98888.1  87 DERVTPELRQAIEQVLeAQPGPTVYSL 113
                      ********9999999877777766555 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.5e-07    0.0016      31     101 ..      33      97 ..      24     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.5e-07
  Glyco_tranf_2_2  31 elivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfek 101
                      e+iv+d gS+++    +s   ++  +v+ + ++    + ++ r r  s a +d++l +DaD  ++++  ++
       EHT98888.1  33 EIIVLDSGSTDD---TLSLAQQAGAQVF-QATE--WQGYGKQRQRAQSFASGDMILMIDADERVTPELRQA 97 
                      89**********...5566677778887.3333..446677888999**************9999875555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2057.36
//
Query:       EHT98889.1  [L=424]
Description: 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-68  227.7   0.0      2e-67  226.3   0.0    1.7  2  Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase
    8.8e-05   22.1   0.0    0.00014   21.4   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.3   0.0   2.2e-71     2e-67       1     178 []      32     210 ..      32     210 .. 0.98
   2 ?   -2.0   0.0      0.28   2.5e+03      43      59 ..     229     245 ..     216     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 226.3 bits;  conditional E-value: 2.2e-71
  Glycos_transf_N   1 krlkerlglak.kekekliwiHaaSvGEveaalpLiealrerkpelkillTttTptGaevakkllaervdhvylPlDlpaavrrfldavkPdll 93 
                      kr++er+g+++ k k+  i +H++SvGE++aa+pL++alr+r+p l+i++Tt+TptG+e+a+++++++v+hvylP+Dlp+a++rfld+v+P+l+
       EHT98889.1  32 KRWAERYGYCAgKVKPDGIVLHSVSVGETLAAVPLVRALRHRYPTLPITVTTMTPTGSERAQSAFGKDVHHVYLPYDLPGAINRFLDTVNPRLV 125
                      69******9998777788**************************************************************************** PP

  Glycos_transf_N  94 ilvetElWpnllaaakkrgipvilvnArlserslrryrrfkallrsllskfdlilaqseedaerlralgapeervevtgnlKfda 178
                      i++etElWpn+++ +++r+ip++++nArlsers+++yr++++++r+ll++++li+aq+ ed er+++lg++++++++tg+lKfd+
       EHT98889.1 126 IIMETELWPNIIRILHQRHIPLVIANARLSERSAKGYRKLGKFMRNLLQSITLIAAQNAEDGERFIQLGLKRSHLSITGSLKFDI 210
                      ***********************************************************************************95 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.28
  Glycos_transf_N  43 pelkillTttTptGaev 59 
                      p+ ++++ t T++G+e+
       EHT98889.1 229 PRRPVWIATSTHEGEEA 245
                      66899999999999986 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.6e-08   0.00014      77     169 ..     303     397 ..     281     400 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.6e-08
                      EEECCHSSSHHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT..SEEEE-TT-HHHHHHHHHHHHHSHHHHHHHH CS
  Glycos_transf_1  77 flgevsredleellknadifvlpsis.EgfGivllEAmaaglpviasn.aggpaevvkdge..tGllvkpnnaealaeairklledeelrerlg 166
                      ++g  s+ +l+ l+ +ad++++     E  G+++lE  a  +pv+    +  ++++  + +  +G l+  ++a++l ++++ ll+d++ r+ +g
       EHT98889.1 303 VIGD-SMGELMLLYGIADLAFVGGSLvERGGHNPLEPAAHAIPVLMGPhTWNFKDICSKLQeaQG-LITVTDAASLEKEVTNLLQDDDYRRYYG 394
                      4444.4599*******99988875555*********************99999999998888555.566667****************999988 PP

                      HHH CS
  Glycos_transf_1 167 ena 169
                      + a
       EHT98889.1 395 RHA 397
                      866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3201.01
//
Query:       EHT98890.1  [L=378]
Description: UDP-glucose:(heptosyl) LPS alpha-1,3-glucosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-28   99.8   0.0    2.1e-28   99.0   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    3.5e-22   79.3   0.0    7.6e-22   78.2   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
    6.3e-18   65.4   0.1    1.2e-17   64.5   0.1    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
    5.8e-07   30.1   0.1    1.6e-06   28.7   0.1    1.8  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    1.6e-06   28.4   0.0    4.2e-06   27.1   0.0    1.7  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   5.9e-32   2.1e-28       5     172 .]     195     353 ..     191     353 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 5.9e-32
                      HHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEE CS
  Glycos_transf_1   5 krkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvl 98 
                       r +l+++++  ++++vg   ++Kg++ +i+a+a      n+   l+++G+ ++ k++++la +l+  d+++f+g +   d+  ++++ad ++l
       EHT98890.1 195 MRTQLNLPTNATVLIYVGSGFERKGLKAAIEALA------NSHRYLIVVGQDKQVKRYQQLANQLNCLDRLRFVGVQQ--DVQPFYHAADGLLL 280
                      6789999***************************......77889*********************************..************** PP

                      EESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
  Glycos_transf_1  99 psisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenarkr 172
                      p  +++f+ v+lEAma+glpvi+s  +g ae +++g+ G++ ++ +++ l++ai+ l +     +r+ge+ar+r
       EHT98890.1 281 PTLYDPFPNVVLEAMACGLPVITSTGCGGAEFIREGQEGFVRDALDIKGLNQAINALSSLT-VDARMGEAARRR 353
                      *********************************************************9997.999999999875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   2.1e-25   7.6e-22       3     131 ..     207     337 ..     205     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2.1e-25
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllEam 91 
                      v+++vG+   ++kg++  +ea++  + +   l++vG+++   +++++la+  +  +r +f+G  +d++++++aad +++P+    f++++lEam
       EHT98890.1 207 VLIYVGSG-FERKGLKAAIEALANSH-R--YLIVVGQDKqV-KRYQQLANqlNCLDRLRFVGVQQDVQPFYHAADGLLLPTlyDPFPNVVLEAM 295
                      799***98.466**********8877.4..7*****76542.56666665344449******88*****************999********** PP

                      HTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  92 aaglpvVatdvggiaevv..gengllvppgdpealaeailrL 131
                      a+glpv++++  g ae++  g++g++ ++ d + l +ai +L
       EHT98890.1 296 ACGLPVITSTGCGGAEFIreGQEGFVRDALDIKGLNQAINAL 337
                      *********854549999999******999********9988 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   3.3e-21   1.2e-17       2     170 .]      17     183 ..      16     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 3.3e-21
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlg 96 
                     GG+er++ +  +aL     +  ++t++++g++         ++  ++ +l+r  r   f++++r+ ++rek+D+v +h  +a+ +  ++      
      EHT98890.1  17 GGAERFISRALEALGSEQLDLNIITRSWQGKPNPD----WHLHICNPGKLGRVSRERGFAQAARACWEREKFDIVQSHERIAG-CDIFR------ 100
                     9********************************99....5677777799******************************8886.33333...... PP

  Glyco_transf_4  97 iplVltvHglye.........krllkarlkplsrllralerrl..lrradrviavSeatadelrerygvppekitVipnGvDler 170
                           vH  +            +l a l+p++r++ + e+ +   ++ ++vi++Se +++++++ + ++++ki+Vi+n++D +r
      EHT98890.1 101 --AGDGVHRVWLeqrarivspLQRLSASLSPYHRYVLRAEADMfqSSSLKAVICNSEMVKQDILRCFTLQADKIHVIYNAIDATR 183
                     ..3346777777777777888888889****************6677778********************************876 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   4.4e-10   1.6e-06       1     159 [.      17     177 ..      17     178 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.4e-10
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlarrr 94 
                      gG++r + + ++aL  +  ++ ++t+++++++ +      ++h +  +  ++  +   +++a+r+ +  +re++d+v++h+  ag  + +a  +
       EHT98890.1  17 GGAERFISRALEALGSEQLDLNIITRSWQGKPNP----DWHLHICNPGKLGRVSRERGFAQAARACW--EREKFDIVQSHERIAGCDIFRA--G 102
                      8999999999999999999999999988888773....33444443332222223344555555555..************8776544444..3 PP

  Glyco_trans_4_4  95 rgipl........vvtlhglllrrgsgavrrly..ralerrllrradavlvvseaeaeelra.lgvpadrvvvvpn 159
                       g+          +v++ ++l ++  ++ +r++  ++++++  ++  av+++se + +++ + + ++ad+++v+ n
       EHT98890.1 103 DGVHRvwleqrarIVSPLQRLSASL-SPYHRYVlrAEADMFQSSSLKAVICNSEMVKQDILRcFTLQADKIHVIYN 177
                      3444301111111344444444443.3444444126666677777999*********99999789*********98 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09   4.2e-06       3      80 ..     279     356 ..     277     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.2e-09
  Glyco_trans_1_2   3 LnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlae 80 
                      L p+ ++ +  +++Ea+acG +++t+   g +e++++g+e+++ +  d + l ++i++l +   ++r ++eaar+rv+  
       EHT98890.1 279 LLPTLYDPFPNVVLEAMACGLPVITSTGCGGAEFIREGQEGFVRDalDIKGLNQAINALSSLTVDAR-MGEAARRRVE-P 356
                      557777888999**************6699999**********99************9988888865.9*******75.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3020.84
//
Query:       EHT98891.1  [L=358]
Description: lipopolysaccharide heptosyltransferase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-52  176.5   0.0    7.4e-52  176.1   0.0    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
    0.00065   19.8   0.4      0.002   18.3   0.3    1.9  2  Tugs            Tethering Ubl4a to BAGS domain
  ------ inclusion threshold ------
      0.079   12.9   0.0        7.3    6.4   0.0    2.3  2  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.1   0.0   1.2e-55   7.4e-52       3     237 ..      86     326 ..      84     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 176.1 bits;  conditional E-value: 1.2e-55
                     HHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT....--SHHHHHHHTTS-GGGS-SS---------HHH CS
  Glyco_transf_9   3 rlakaLrekayDlvidlqgllkSAllvralkapvriGldeesrelaslfysrkvdkak....gqhaVernraLfaqaldlpkpeskpelalslke 93 
                     +l  a+r+++yDlvi+l ++++SA+++   +apvriG++  +r+ a++   +++ +      + h Ve+n++ ++    +p++ +   +  s ++
      EHT98891.1  86 ALVAAVRNCQYDLVINLADQWRSAIITGLSGAPVRIGFAFTKRDKAIWRWCHTHLVTTenheQLHTVEQNLSALSPL-TIPAEGIGASMHFSPDD 179
                     67889**************************************66666666665543211347799*****999987.34555555555555555 PP

                     HHHHHHHTT.--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTT.EEE-TTTS-HHHHHHHHHTS CS
  Glyco_transf_9  94 raaaldaag.llaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleek.avnllgktsLeelaallaka 186
                     +++ ++++  +++   yiv++p++++++K+W e+k a+ +++l ++  +v+L+++++a+e+e++eri a+++ +  +  +g++sL +laal+a+a
      EHT98891.1 180 AQKVQNKLRqQQVAGGYIVLQPTSRWQFKCWEEDKVAATIDQLAQADRKVILTAGPDANEREMVERILAQCHSPhVISFAGQLSLPQLAALIAGA 274
                     5555555443445559********************************************************998889***************** PP

                     SEEEEESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEES.S--.-- CS
  Glyco_transf_9 187 dlvvgnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsl.eeeasp 237
                     +l++g+DS++mH+AaAld+p iaL+gpt+ ++++p++++ +++++ +++  p
      EHT98891.1 275 QLFIGVDSAPMHMAAALDTPCIALFGPTKLQHWRPWGDNNRVIWAgDYGSLP 326
                     ********************************************97877665 PP

>> Tugs  Tethering Ubl4a to BAGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   3.4e-07     0.002      11      28 ..     174     191 ..     172     193 .. 0.93
   2 ?   -4.0   0.0         3   1.8e+04       4      13 ..     243     252 ..     242     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.4e-07
        Tugs  11 HFspqDaekVleqLrkey 28 
                 HFsp Da+kV+++Lr+ +
  EHT98891.1 174 HFSPDDAQKVQNKLRQQQ 191
                 ***************976 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
        Tugs   4 laqvLakHFs 13 
                 ++++La+  s
  EHT98891.1 243 VERILAQCHS 252
                 6789988665 PP

>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0012       7.3       2      75 ..      22     107 ..      21     133 .. 0.70
   2 ?    4.3   0.0    0.0056        33     199     263 ..     215     279 ..     170     280 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
                     HHHHHHHHHHHHHHHHTT-EEEEEESSTTT--HHHHHHHHHTS-GGGEE...........................EEE--E.... CS
  PS_pyruv_trans   2 yGDelilealvklLrelgpdaeiivltpdpsetkkllkvktpilkklskvllkrlrkkdi...........ddaddviivGgd.gt 75 
                      GD+l+   +++ L++++p a+i+vl ++ +      + + + l  +   ++k  +++++           +  +d++i  +d ++
      EHT98891.1  22 HGDMLLTTPVINALHRHYPQAVIDVLLYKETRPMLEAHPAIRHLHVIDRGWKKEGGWQKFrhemalvaavrNCQYDLVINLADqWR 107
                     6*************************966666666555555555555555555555555588999999999888888888887533 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0056
                     -HH...............................HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE CS
  PS_pyruv_trans 199 ydlllekgarllllpivkkdglelddlyllllraaakkekvtildrfaspeellsliaradfvit 263
                     +   +++ a+  ++ i   + + +++++ + + a  ++ +v+   +  s  +l++lia+a+++i+
      EHT98891.1 215 VAATIDQLAQADRKVILTAGPDANEREMVERILAQCHSPHVISFAGQLSLPQLAALIAGAQLFIG 279
                     4444444444444444444445555555555554888889999999999************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2921.25
//
Query:       EHT98892.1  [L=316]
Description: family 2 glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-29  103.2   0.1    5.3e-29  101.2   0.0    1.9  2  Glycos_transf_2  Glycosyl transferase family 2
    2.8e-12   47.0   0.2    1.3e-11   44.9   0.1    2.1  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.7e-09   37.6   0.0    2.8e-09   36.9   0.0    1.3  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   8.9e-33   5.3e-29       7     128 ..       2     121 ..       1     166 [. 0.92
   2 ?   -0.5   0.0      0.15   9.3e+02     108     150 ..     204     254 ..     197     272 .. 0.60

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 8.9e-33
                      SS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-TTHHHHH CS
  Glycos_transf_2   7 yNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdpdwlekl 100
                      +N  +  ++++ sllaq +   +eii+vDDgStD++ ++++++a+++p++rvi+++ n G ++a+nagl+ a+g+y++f DaDd+++pd  + l
       EHT98892.1   2 FNAGAGFERFIQSLLAQ-TLTSLEIIIVDDGSTDDSGKQADNYAQRYPHIRVIHQP-NGGVSRARNAGLAVARGKYVTFPDADDTMKPDMYQTL 93 
                      89999999*********.**************************************.55*********************************** PP

                      HHHHHH.TTCEEEEEEEEEECCCCCCCH CS
  Glycos_transf_2 101 vealekdgadvvlgqrprifgetdeier 128
                       + +e+d+ dv+ ++   +f  ++ i++
       EHT98892.1  94 TDMAEADNLDVAHCNAEWFFPADNAIQP 121
                      ************9999988888777766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.15
                      TTCEEEEEEEEEECCCCCCCHC-SS........EEEECCHCCCCHCCCCCC CS
  Glycos_transf_2 108 gadvvlgqrprifgetdeiernkrv........generlyfkerkrslkgn 150
                       +d+ + +r r+++ + e++r++          + ++r + k++  + ++ 
       EHT98892.1 204 THDASISNRKRTGQANVEYQRHYLKiarmleeiNARYRDKVKIYPTFHYQV 254
                      566788888999999999999887566545444444444444444444444 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   2.2e-15   1.3e-11      11     126 ..       2     111 ..       1     238 [. 0.85
   2 ?    0.5   0.0     0.078   4.7e+02      17      53 ..     229     266 ..     214     299 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.2e-15
  Glyco_tranf_2_3  11 fneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdDtvvePdt 104
                      fn+ +  ++ + sllaq+  ++e+++v+d+s+++  + a+  a+++p++  rv+++++ +   g sra n +l  +++++v++ D+D+   Pd 
       EHT98892.1   2 FNAGAGFERFIQSLLAQTLTSLEIIIVDDGSTDDSGKQADNYAQRYPHI--RVIHQPN-G---GVSRARNAGLAVARGKYVTFPDADDTMKPDM 89 
                      5667778899**************************************6..8****99.4...667888************************* PP

  Glyco_tranf_2_3 105 lkrllqffltpkvgavgtpvfl 126
                       + l+  +++++ +++ ++ ++
       EHT98892.1  90 YQTLTDMAEADNLDVAHCNAEW 111
                      ***9999988888887777655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.078
  Glyco_tranf_2_3  17 lgevlesllaqeyprvevvvvv.desdaetlevaeela 53 
                      + ++le++ a  ++ v+++    ++ ++e+l+v+  + 
       EHT98892.1 229 IARMLEEINARYRDKVKIYPTFhYQVTHEALSVCHSIR 266
                      55666666664335566665555666666666666553 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   4.6e-13   2.8e-09      25     111 ..      21     102 ..       5     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 4.6e-13
  Glyco_tranf_2_2  25 yydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilklitikkl 111
                           +e+i+vddgS+++  ++  +  +   ++ + ++++   + ++arN G   a + +v F DaD+ + +D+++ +  +++  +l
       EHT98892.1  21 T---SLEIIIVDDGSTDDSGKQADNYAQRYPHIRVIHQPNG--GVSRARNAGLAVARGKYVTFPDADDTMKPDMYQTLTDMAEADNL 102
                      3...78***************************98999776..67789*****************************9999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2508.44
//
Query:       EHT98893.1  [L=226]
Description: glycosyl transferase, family 9 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-05   22.7   0.0    6.7e-05   22.3   0.0    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
      0.054   13.2   0.0      0.086   12.6   0.0    1.3  1  DUF2616         Protein of unknown function (DUF2616)
       0.15   11.7   0.0       0.25   11.0   0.0    1.3  1  DUF383          Domain of unknown function (DUF383)


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.1e-08   6.7e-05       3     161 ..      43     210 ..      41     219 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.1e-08
                     HHHHHTTTTT-SEEEE-S--..SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT--SHHHHHHHTTS-G.GGS-SS.---------HHH CS
  Glyco_transf_9   3 rlakaLrekayDlvidlqgl..lkSAllvralkapvriGldeesrelaslfysrkvdkakgqhaVernraLfaqa.ldlpkp.eskpelalslke 93 
                     +++  Lr+ ++D+v+ ++     +S  l+r ++a+ +iG  +   +    f s   +   ++h+Ve + + ++     lp   ++  +l+ s++e
      EHT98893.1  43 KIFWMLRQTHFDAVVLANPVpcRYSLRLARLAGATNIIGAGQPNQGFTRSFSSADFS---ENHQVEHTYSYLSSLtAHLPDVpPVRVYLTKSERE 134
                     666678888888888776532257888999999999999999888444444444443...66888877655555444444430344455555555 PP

                     HHHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT.-EEEE---GGGH.......HHHHHTTS-H CS
  Glyco_transf_9  94 raaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqekg.yqvvLfgsaeae.......eeeiaeriaa 161
                     +a+++  a   +e + +++  +++ ++ rW +++ya+ + +l +    +v Lf+s++ +       ++++ae++ +
      EHT98893.1 135 EAESRVHALFPVEGQTYGVHISSRCAKRRWAIDNYAAFIHILLKDEkARVLLFWSPQGAlgpedmgDNARAEKLLQ 210
                     5544444445688889998888888***************98766659*******987665555566666666655 PP

>> DUF2616  Protein of unknown function (DUF2616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05     0.086      94     134 ..      18      58 ..       6      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
     DUF2616  94 SvcyyesakkskvssnernvwreRlrlaWkieeskskvytv 134
                 S   y++ak+++++++++ v+ +Rl++ W+ ++++++  ++
  EHT98893.1  18 SLHVYKKAKHRSKNESAMGVYWHRLKIFWMLRQTHFDAVVL 58 
                 66779999999999999*************98877765444 PP

>> DUF383  Domain of unknown function (DUF383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05      0.25      63     109 ..      99     145 ..      84     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
      DUF383  63 tkdlnksanydylayvfanlsqlpegRelllepqesdkelplqkllp 109
                 +++ + + +y yl+++ a l  +p +R +l+++++++ e  +  l+p
  EHT98893.1  99 SENHQVEHTYSYLSSLTAHLPDVPPVRVYLTKSEREEAESRVHALFP 145
                 333344477************************88888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1834.41
//
Query:       EHT98894.1  [L=321]
Description: WalW family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.19   10.5   0.0       0.33    9.7   0.0    1.3  1  HN        Haemagglutinin-neuraminidase


Domain annotation for each model (and alignments):
>> HN  Haemagglutinin-neuraminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.8e-05      0.33      56     145 ..     193     288 ..     190     296 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 1.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....GGGTTHHHHXXXXXXXXXXXXXXXEEES--SS-----EEECE....B CS
          HN  56 vkliqkevtlsiParitklekkisdaiksicenpnekikltlddl....kaheeliaalnpstflearakeqivddskstcssgtprlsss..vsl 145
                 +++i++++ l+iP++i+ +   +++++k+  +++  k k    +     k++   +  +++ +  e+     ++  s + +++g p++ s   ++l
  EHT98894.1 193 ISRIGHSSLLEIPMSIHYKYPPLINKLKQATYRIRGKQKSPAVNWlrpsKNNLAEMKRVVEMSIAEGQDYVEFMLHSSEFMPGGSPTFVSEqdIEL 288
                 689*****************************99999776655547777999999*************9999999999999999999988744444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2404.99
//
Query:       EHT98895.1  [L=366]
Description: putative glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-26   93.3   0.0    2.3e-26   92.4   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    6.4e-22   78.4   0.0    1.3e-21   77.4   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    7.2e-14   52.1   0.0    1.3e-13   51.3   0.0    1.4  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00063   20.2   0.0      0.001   19.5   0.0    1.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
      0.022   15.1   0.0      0.049   14.0   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   6.4e-30   2.3e-26      13     160 ..     199     343 ..     188     353 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 6.4e-30
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES...STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBS CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG..ngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEg 104
                       + ++++ vgr+ ++K++d+l++a+al+    n ++ lv+ G  + e+++ l+ la++l++ ++vif g+++  +  +++++a++++++s sEg
       EHT98895.1 199 PESEFLIHVGRFHETKRHDRLLQAYALS----NIPLPLVLLGqgSPERQAILETLAKKLGIHERVIFQGFSP--NPYAWISKAKMLIVSSDSEG 286
                      6789**********************87....99********888889999*********************..******************** PP

                      S-HHHHHHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH.H CS
  Glycos_transf_1 105 fGivllEAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairkllede.e 160
                      fG v++EAm +g+pv+++   ggp  +++      l + n +++la++++++ +++ e
       EHT98895.1 287 FGNVIIEAMLCGTPVVSTRcPGGPTSLLQGDLARGLADLN-PQSLADKMIEIYNSPpE 343
                      *******************777777777766666666666.9**********999953 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   3.6e-25   1.3e-21       4     133 ..     204     339 ..     201     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 3.6e-25
                      EEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---....HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp..rpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllEam 91 
                      +++vGr++ + k++d ll+a +l    ++ lv+ G+g+  r++ le la+  g++erv+f Gf ++  +++++a+++++ s  egfg++++Eam
       EHT98895.1 204 LIHVGRFH-ETKRHDRLLQAYALSN-IPLPLVLLGQGSpeRQAILETLAKklGIHERVIFQGFSPNPYAWISKAKMLIVSSdsEGFGNVIIEAM 295
                      789****5.56**********8887.5599*****99874445556566568999***************************99********** PP

                      HTT-EEEE-TGG.GTTT--.TTSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  92 aaglpvVatdvg.giaevv.gengllvppgdpealaeailrLle 133
                       +g+pvV+t+++ g+  ++ g+ +  +++ +p++la++++++++
       EHT98895.1 296 LCGTPVVSTRCPgGPTSLLqGDLARGLADLNPQSLADKMIEIYN 339
                      ***********84556666876655555678*********9986 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.5e-17   1.3e-13       2     169 ..      15     186 ..      14     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.5e-17
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrllkre..kpDvvHahspaalgaalla 90 
                     GG+e +vl+L+++L ++Gh+V++++ +d  + +  +     ++ +   +p+++l  l+r+ ++l ++ r+ ++    +D+v +h + +   + + 
      EHT98895.1  15 GGAEKVVLTLVKGLLKLGHRVSLFSLRDVCAYPLPEgvnyQVILDNNNKPWRKLTELYRRARSLDDAIRQTEKKngSFDLVISHLHKTDRIVSRS 109
                     9***********************7776554444443344445555555555555555555555555555444479*****99999998665544 PP

  Glyco_transf_4  91 lrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                      +  l  ++ + +Hg + +  + +++k  sr+l+    + + + + +i vS+ + ++l++ + v p++ tVi n+ +++
      EHT98895.1 110 RA-LLCEKTWYCLHGIF-SASYLGHRKGISRWLKIRKIHNVYQKKNIIGVSPMVLEDLKSIFAVTPSRETVIGNPFNIS 186
                     44.59************.7888888888999998866655889999****************************98865 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.8e-07     0.001       1     159 [.      15     181 ..      15     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.8e-07
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpsplad....laalralrrll...rqrrerpdvvhahsptagla 87 
                      gG++++v  l+++L ++Gh+V ++  ++  +      +gv +    +  + +p++     ++++r l +++   + +   +d+v++h  ++  +
       EHT98895.1  15 GGAEKVVLTLVKGLLKLGHRVSLFSLRD--VCAYPLPEGVNYQV-ILDNNNKPWRKltelYRRARSLDDAIrqtEKKNGSFDLVISHLHKTDRI 105
                      8************************854..22223456888644.44444333333111144555555555555889***********999998 PP

  Glyco_trans_4_4  88 arlarrrrgiplvvtlhglllrrgsgavrrlyralerrllrrada...vlvvseaeaeelra.lgvpadrvvvvpn 159
                      + + r+    + ++ lhg   +++ g ++ + r+l  r ++++ +   ++ vs+ + e+l   + v ++r +v++n
       EHT98895.1 106 VSRSRALLCEKTWYCLHGIFSASYLGHRKGISRWLKIRKIHNVYQkknIIGVSPMVLEDLKSiFAVTPSRETVIGN 181
                      888887889999*****9888888888999999998777777766666**************999********999 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.4e-05     0.049       5      63 ..     281     341 ..     275     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
  Glyco_trans_1_2   5 psrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanp 63 
                       s se++  ++ Ea+ cG+++++++ +g +  +  g+ +   +  ++++la+k+ +  ++p
       EHT98895.1 281 SSDSEGFGNVIIEAMLCGTPVVSTRCPGGPTSLLQGDLARGLAdlNPQSLADKMIEIYNSP 341
                      567799******************9876666666665555555466666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2877.80
//
Query:       EHT98896.1  [L=167]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-23   81.6   0.0    5.1e-23   81.4   0.0    1.1  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   2.9e-27   5.1e-23       3     142 ..       2     140 ..       1     144 [. 0.96

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 2.9e-27
       DDE_3   3 vfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelve 101
                 ++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  ++++
  EHT98896.1   2 FYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWLK 100
                 678************************************************************************************************ PP

       DDE_3 102 eeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 +   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98896.1 101 A-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 140
                 9.9*****************************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1412.80
//
Query:       EHT98897.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    5.9e-14   52.2   1.3    1.4e-13   51.0   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.035   13.7   2.4      0.039   13.5   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.05   12.2   7.5      0.079   11.5   7.5    1.3  1  FUSC             Fusaric acid resistance protein family
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.54   10.3   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.0   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.8    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98897.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98897.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98897.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98897.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98897.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   1.3   1.7e-16   1.4e-13       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.7e-16
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+   +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98897.1 128 ETTCPACGGEFNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799**************.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.3e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.3e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98897.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.6e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98897.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4    0.0001     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.17   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98897.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98897.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.025        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98897.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT98897.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98897.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   4.8e-05     0.039     144     232 ..      10     100 ..       3     189 .. 0.68
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT98897.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555555666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98897.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.5e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT98897.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98897.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.5   9.7e-05     0.079     213     295 ..       4      92 ..       1     122 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98897.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0    0.0001     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98897.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00042      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00042
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT98897.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00043      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.29   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98897.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98897.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00038      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98897.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98897.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98897.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98897.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0015       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98897.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0053       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98897.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT98897.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0034       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.1   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0034
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT98897.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT98897.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT98897.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.31   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98897.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98897.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                     1038  (0.057895); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.36
# Mc/sec: 4342.78
//
Query:       EHT98898.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98898.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 905.51
//
Query:       EHT98899.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98899.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98899.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98899.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98899.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 848.12
//
Query:       EHT98900.1  [L=143]
Description: hypothetical protein CKS_1128 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-09   37.8   0.3    4.1e-09   36.9   0.3    1.5  1  HTH_32         Homeodomain-like domain
    2.6e-09   36.6   0.0    2.4e-07   30.3   0.0    2.7  2  HTH_23         Homeodomain-like domain
    4.3e-07   29.5   1.1    8.7e-07   28.5   0.3    1.8  2  HTH_33         Winged helix-turn helix
    6.4e-07   29.3   0.3      5e-06   26.4   0.2    2.1  2  HTH_29         Winged helix-turn helix
    0.00018   21.5   0.1     0.0057   16.8   0.1    2.3  2  HTH_28         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.021   14.6   0.1       0.11   12.3   0.0    2.0  2  HTH_38         Helix-turn-helix domain
      0.029   14.9   0.1       0.05   14.1   0.1    1.4  1  LZ_Tnp_IS481   leucine-zipper of insertion element IS481
      0.068   12.6   0.4        1.2    8.6   0.2    2.4  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
       0.11   12.8   0.0       0.17   12.2   0.0    1.4  1  HTH_Tnp_Tc3_2  Transposase


Domain annotation for each model (and alignments):
>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.3   2.1e-12   4.1e-09       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.1e-12
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98900.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.2e-10   2.4e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    3.3   0.0     0.036        73      30      38 ..      95     103 ..      92     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.2e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98900.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.036
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98900.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   2.6e+03       3      16 ..      48      61 ..      47      65 .. 0.77
   2 !   28.5   0.3   4.4e-10   8.7e-07       3      52 ..      75     124 ..      73     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98900.1 48 RRWPFEHICALLRE 61
                58888889998887 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 4.4e-10
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98900.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   2.5e-09     5e-06       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?    0.4   0.0      0.35   6.9e+02      25      33 ..      95     103 ..      92     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.5e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98900.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98900.1  95 HASTIRRWL 103
                 568*****8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.9e-06    0.0057       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    2.5   0.0     0.082   1.6e+02      24      33 ..      94     103 ..      91     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.9e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98900.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456999********************************96437765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.082
      HTH_28  24 isrrtvyrWi 33 
                 ++ +t++rW+
  EHT98900.1  94 LHASTIRRWL 103
                 5789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.4e-05      0.11      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -0.4   0.0       0.5   9.9e+02      33      39 ..      95     101 ..      94     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.4e-05
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98900.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.5
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98900.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.5e-05      0.05      26      68 ..       8      51 ..       2      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98900.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589**********************9999999764266777766 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00061       1.2      21      49 ..       2      29 ..       1      29 [. 0.88
   2 ?    1.5   0.0       0.1     2e+02      37      48 ..      92     103 ..      92     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00061
  HTH_Tnp_ISL3 21 lelllesrsvkavArqlgvSwtTVwrild 49
                  l+l++ + +v++vAr l +  +++ r+++
    EHT98900.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWIN 29
                  5678888.****************99985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
  HTH_Tnp_ISL3  37 lgvSwtTVwril 48 
                   + ++++T++r+l
    EHT98900.1  92 CPLHASTIRRWL 103
                   6799******97 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.5e-05      0.17      16      60 ..      79     124 ..      60     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.5e-05
  HTH_Tnp_Tc3_2  16 lreLanelkee.GksvsreTirrrLrkaglkkrkprkkplLskknr 60 
                     + La ++ +  G   +++Tirr L +agl  r++     ++  ++
     EHT98900.1  79 TELLAIKIRDItGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                    5556777777779999*****************9988777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1122.10
//
Query:       EHT98901.1  [L=310]
Description: NAD(P)-binding ADP-L-glycero-D-mannoheptose-6-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-44  151.6   0.0    3.2e-44  151.2   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.8e-25   89.0   0.1      1e-24   87.6   0.1    1.6  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    8.4e-11   41.5   0.0    2.5e-10   39.9   0.0    1.7  2  RmlD_sub_bind    RmlD substrate binding domain
    9.5e-09   34.6   0.0    1.3e-08   34.2   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.4e-06   25.8   0.0    0.00045   19.5   0.0    2.4  2  NAD_binding_4    Male sterility protein
    1.3e-05   24.5   0.0      0.048   12.8   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0019   18.1   0.1      0.037   13.9   0.1    2.3  1  KR               KR domain
  ------ inclusion threshold ------
        0.2   11.1   0.0       0.32   10.4   0.0    1.4  1  adh_short        short chain dehydrogenase
       0.22   11.8   0.1       0.42   10.9   0.1    1.4  1  TrkA_N           TrkA-N domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0   1.6e-47   3.2e-44       1     241 []       2     236 ..       2     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 1.6e-47
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHH......HHH.T-SEEEE--S.---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledlelveldltdrsalerlf......kee.qpdavihlAa.vggvaassedpadfiek 90 
                 i+VtG++G+iGs++vk l+++g++ ++++d+l+++ ++ +l+     +ld+td  + e+++      ++   ++av+h +a  ++ ++   d ++++++
  EHT98901.1   2 IIVTGGAGMIGSNIVKTLNDRGHTdILVVDNLKDGTKFVNLA-----DLDITDYMDKEEFLtyimsgEDLgPIEAVFHEGAcSATTEW---DGKYMMDN 92 
                 89********************999*******9999999877.....55555555444444111222345679******997777777...6777999* PP

                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHHH CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege.vsrvip 187
                 n q++ +ll+ + ++++  +l++sS+++YG  +e    e+    ++ +p + Y+++K++++++v+++  +   +++ +r+fn+yGpr+g++  +++v +
  EHT98901.1  93 NYQYSKDLLHFCLEREI-PFLYASSAATYGGRNEN-FIEER---QYeQPLNVYGYSKMLFDHYVRQILPEATSPVCGFRYFNVYGPREGHKGsMASVAF 186
                 *****************.************88885.55555...6889***************************************555555****** PP

                 HHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 188 alirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +l ++i + +++ ++ g+ + +Rdf++v+Dv+ ++l+  e+       +iyn+G
  EHT98901.1 187 HLNTQISNDENPKLFEGSYSFKRDFIHVDDVVSVNLWCWEN----GISGIYNCG 236
                 **********8888889************************....456799998 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.1   5.2e-28     1e-24       1     262 [.       3     250 ..       3     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 5.2e-28
                    EEETTTSHHHHHHHHHHHHCT-CCEEE.EEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-.HHHHHHHHHHH...T-SEEEE--S---HHHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgi.vrrsssfntgriehlakdpkeeleenlklhkgDltD.ssslerllaev...qpdevynLAAqshVdvs 91 
                    ++TG+aG iGs++++ L ++g++ + + +++++ +++ +++ l                 D  D ++ l+ +++      +++v++ +A s+  + 
     EHT98901.1   3 IVTGGAGMIGSNIVKTLNDRGHTDILVvDNLKDGTKFVNLADLD--------------ITDYMDkEEFLTYIMSGEdlgPIEAVFHEGACSATTE- 83 
                    59******************997665505555555555555553..............2355553456777777763335899********9876. PP

                    TTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTT CS
  GDP_Man_Dehyd  92 fekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhespr 187
                    ++  +y++++n      LL  +    le+++ f+ aS++  YG  +e  ++E++  +P + Y+ +K+  d+ v+++  +   +++  ++fn ++pr
     EHT98901.1  84 WDG-KYMMDNNYQYSKDLLHFC----LEREIPFLYASSAATYGGRNENFIEERQYEQPLNVYGYSKMLFDHYVRQILPEATSPVCGFRYFNVYGPR 174
                    776.9****************9....557899**************************************************************** PP

                    S-TTSCCC.HHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCC CS
  GDP_Man_Dehyd 188 rgetfvtr.kitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvela 262
                     g++        +  ++i ++++++l  G  + kRd+ hv+D+v++     +++ +  y+++tg+  s +e++++ 
     EHT98901.1 175 EGHKGSMAsVAFHLNTQISNDENPKLFEGSYSFKRDFIHVDDVVSVNLWCWENGISGIYNCGTGRAESFQEVADAV 250
                    **99765515567788999999************************888999*****************9999865 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.2e-13   2.5e-10       3     144 ..       2     159 ..       1     192 [. 0.83
   2 ?   -1.4   0.0      0.49   9.7e+02     202     233 ..     225     256 ..     217     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.2e-13
                    EEEESTTSHHHHHHHHHCTTTSEE.EEEE-TT...........T--TTSHHHHHHHH......HHH--.SEEEE------HHHHHHSHHHHHHHHT CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeegle.vlaltre...........eldltdaeavaell......keakp.dvvvnaAAytavDkaEseeeaayavna 79 
                    i+vtG+ G++Gs+++k l+ +g+  +l ++ +           +ld+td    +e+l      ++  p ++v + +A  a    E + +  +  n 
     EHT98901.1   2 IIVTGGAGMIGSNIVKTLNDRGHTdILVVD-NlkdgtkfvnlaDLDITDYMDKEEFLtyimsgEDLGPiEAVFHEGACSAT--TEWDGKYMMDNNY 94 
                    89*****************99865144444.34899*******88888887777777666777666553699999998885..68888999999** PP

                    HHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEE CS
  RmlD_sub_bind  80 eavealAeaaaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkal 144
                    + ++ l + + ++++++++ S+   + G++++  ee +  +PlnvYG +K++  + v++  ++a+
     EHT98901.1  95 QYSKDLLHFCLEREIPFLYASSAATYGGRNENFIEERQYEQPLNVYGYSKMLFDHYVRQILPEAT 159
                    **********************************************************9777654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.49
                    H.GGG-EEEE---BS-EEHHHHHHHHHHHHCH CS
  RmlD_sub_bind 202 eekelagvyHlanegetswlefArailkeaga 233
                    +e+ ++g+y ++  ++ s  e+A+a+l+  ++
     EHT98901.1 225 WENGISGIYNCGTGRAESFQEVADAVLNFHQK 256
                    55667899999999999999999999987766 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   6.5e-12   1.3e-08       1     190 [.       3     179 ..       3     222 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 6.5e-12
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdk.leealeg.....vdvvihlaslvdvagkltedeimkvnv 93 
                 +vtGgaG +G+++vk+L ++++  ++ v+D      l++ ++ vn +++  +D +dk++ l+  + g     +++v+h  ++   + +   + +m+ n+
  EHT98901.1   3 IVTGGAGMIGSNIVKTLNDRGH-TDILVVDN-----LKDGTKFVNLADLDITDYMDKEEfLTYIMSGedlgpIEAVFHE-GACSATTEWDGKYMMDNNY 94 
                 69*******************6.77777774.....4555555666666666766665414444444222226789998.66666666888889***** PP

   3Beta_HSD  94 kGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllv 190
                 +  + +l  c++ ++++l Y Ssa   g+  ++e+++   Ee +ye ++ ++y +sK l +++v +         ++   c  R   +yG+++    
  EHT98901.1  95 QYSKDLLHFCLEREIPFL-YASSAATYGG--RNENFI---EERQYE-QPLNVYGYSKMLFDHYVRQILP-----EATSPVCGFRYFNVYGPREGHKG 179
                 ***************975.**********..999999...666665.5789*************87655.....44566899999999999875443 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.014        29       1      19 [.       4      22 ..       4      38 .. 0.80
   2 !   19.5   0.0   2.3e-07   0.00045      88     226 ..      69     192 ..      64     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
                   EE-TTSHHHHHHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrt 19
                   +TG+ G++G+ +++ L ++
     EHT98901.1  4 VTGGAGMIGSNIVKTLNDR 22
                   7************998655 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2.3e-07
                    --EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHH CS
  NAD_binding_4  88 vdviihsaAtvnfde.pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKal 182
                    +++++h +A    +e + k +++ N +  +++l ++ ++ +  ++l+ S+a+ +g r++                +  e+++ ++  n Y +sK+l
     EHT98901.1  69 IEAVFHEGACSATTEwDGKYMMDNNYQYSKDLLHFCLER-EI-PFLYASSAATYGGRNE----------------NFIEERQYEQPLNVYGYSKML 146
                    678999776544444355669****************66.44.7******999999994................457889999999********* PP

                    HHHHHHHHHHHH---EEEEEE-EEE-..-SSST---TTSHHHHHHH CS
  NAD_binding_4 183 aEklvrearrrsglpvvivRpsiitg..esktGwingsdlgirgll 226
                     ++ vr+   + + pv+ +R  +++g  e  +G++ +  + +++ +
     EHT98901.1 147 FDHYVRQILPEATSPVCGFRYFNVYGprEGHKGSMASVAFHLNTQI 192
                    ************************9988777888877776555544 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.4e-05     0.048       1      32 [.       2      33 ..       2      78 .. 0.81
   2 !    9.8   0.0   0.00019      0.38     133     242 ..     135     249 ..     132     264 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES- CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerd 32
                     ++vtG++G iGs++v+++ ++  + i+++++ 
       EHT98901.1  2 IIVTGGAGMIGSNIVKTLNDRGHTDILVVDNL 33
                     79*************************99974 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00019
                      S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT.......GTTSSHHHHHHHHHTTSSEEES-..TT-EEEEE-HHHHHHHHHHHH CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlg.......SrGSviplFkkqikeggpvtvTd..pemtRyfmtieeavqLvlqal 217
                      +P nv+G +K+l + ++ ++  e+   ++ ++  R+ NV g       S  Sv    + qi+++++  + +   +  R f+ +++ v++ l + 
       EHT98901.1 135 QPLNVYGYSKMLFDHYVRQILPEA---TSPVCGFRYFNVYGpreghkgSMASVAFHLNTQISNDENPKLFEgsYSFKRDFIHVDDVVSVNLWCW 225
                      69***************9999888...6789999999998622221113345555667788877654443311456666666666666666666 PP

                      HH--SS-EEEE--.-EEEHHHHHHH CS
  Polysacc_synt_2 218 alakggeifvldmGepvkivdlaka 242
                      +++ +g i+    G + + +++a a
       EHT98901.1 226 ENGISG-IYNCGTGRAESFQEVADA 249
                      665554.555555555555555555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.9e-05     0.037       3      31 ..       2      30 ..       1     124 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvll 31
                 ++tGG+G +G  ++++l ++g + ++++
  EHT98901.1  2 IIVTGGAGMIGSNIVKTLNDRGHTDILVV 30
                58**********************99986 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00016      0.32       3      37 ..       2      36 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekl 37
                ++vtG+++ IG +i+k+l  +G + ++v  + ++ 
  EHT98901.1  2 IIVTGGAGMIGSNIVKTLNDRGHTDILVVDNLKDG 36
                89********************9988855554444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00021      0.42       5      31 ..       7      34 ..       2      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                S-SHHHHHHHHHHHH.TTEEEEEEESSH CS
      TrkA_N  5 GlGrvGrslaeeLse.ggkdvvvidkde 31
                G+G +G++++++L++ g+ d++v+d+ +
  EHT98901.1  7 GAGMIGSNIVKTLNDrGHTDILVVDNLK 34
                79*************88999*****865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2408.27
//
Query:       EHT98902.1  [L=352]
Description: ADP-heptose:LPS heptosyltransferase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-81  271.5   0.0    7.7e-81  271.1   0.0    1.2  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
      0.018   15.0   0.0        5.2    6.9   0.0    2.3  2  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.1   0.0   8.6e-85   7.7e-81       1     249 []      69     323 ..      69     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 271.1 bits;  conditional E-value: 8.6e-85
                     HHHHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT--SHHHHHHHTTS-G.....GGS-SS--------- CS
  Glyco_transf_9   1 rlrlakaLrekayDlvidlqgllkSAllvralkapvriGldeesrelaslfysrkvdkakgqhaVernraLfaqa.....ldlpkpeskpelals 90 
                     r+rl+k+Lr + yD++++l++++kSAl+++++++p r+G+++e+r +++l++ r +dka+++++Ver++aL++++       lp+p +kp+l++s
      EHT98902.1  69 RRRLGKSLRDQGYDRAYVLPNSFKSALVPFFAGIPRRVGWRGEMR-YGLLNDVRVLDKAAFPLMVERYVALAYDTpfrsaRQLPQPLLKPQLQVS 162
                     68*******************************************.****************************9999999************** PP

                     HHHHHHHHHHTT--SSS-EEEEE---TT.GGGS--HHHHHHHHHHHHHTT-EEEE---GGGH..HHHHHTTS-HHHHTTEEE-TTTS-HHHHHHH CS
  Glyco_transf_9  91 lkeraaaldaagllaerpyivflpgask.daKrWpeekyaelaealqekgyqvvLfgsaeae..eeeiaeriaagleekavnllgktsLeelaal 182
                     ++e++  + +++l++erp i+f+pga++ +aKrWp+ +ya+lae+l+++g+q+ Lfgs ++   +eei   + +  +e + nl+g+t+Le+++ l
      EHT98902.1 163 EAEKSVMAAQFQLSSERPAIGFCPGAEFgPAKRWPHFHYAALAEQLIREGFQILLFGSVKDGptGEEIIASLPETNREHCRNLAGQTQLEQAVIL 257
                     *************************************************************999******************************* PP

                     HHTSSEEEEESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEESS--.-------------- CS
  Glyco_transf_9 183 lakadlvvgnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsleeeaspelkkedslkkya 249
                     la++++vv+nDSGlmH+AaAl+rp++aLYgp++p++t+pls++a+i++l  + ++ ++k d+++ y+
      EHT98902.1 258 LAQCRAVVSNDSGLMHIAAALNRPLVALYGPSSPDFTPPLSDQARIIRLISG-YHRVRKGDAEQGYH 323
                     ************************************************9888.99999999999886 PP

>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0013        12       3      29 ..      12      38 ..      11      45 .. 0.92
   2 ?    6.9   0.0   0.00058       5.2     186     264 ..     192     267 ..     152     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0013
                    HHHHHHHHHHHHHHHTT-EEEEEESST CS
  PS_pyruv_trans  3 GDelilealvklLrelgpdaeiivltp 29
                    GD++++ +l + L+  +pda+i+v  p
      EHT98902.1 12 GDMMMSQSLYRTLKAEHPDAVIDVMAP 38
                    9*********************99865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00058
                     S--EE---SSS---HH...............................HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE- CS
  PS_pyruv_trans 186 kdledleellakvydlllekgarllllpivkkdglelddlyllllraaakkekvtildrfaspeellsliaradfvits 264
                       ++++  ++a++   l+ +g+++ll+  vk +  + + +  l+   + ++e++  l + ++ e+++ l+a++++v+++
      EHT98902.1 192 PAKRWPHFHYAALAEQLIREGFQILLFGSVKDGPTGEEIIASLP---ETNREHCRNLAGQTQLEQAVILLAQCRAVVSN 267
                     55677778888888888889999999888888888888888888...999***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2625.16
//
Query:       EHT98903.1  [L=324]
Description: ADP-heptose:LPS heptosyl transferase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-75  252.3   0.1    5.5e-75  251.9   0.1    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
       0.11   11.4   0.0       0.15   10.9   0.0    1.2  1  Epimerase_2     UDP-N-acetylglucosamine 2-epimerase


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   0.1   6.1e-79   5.5e-75       1     240 [.      75     308 ..      75     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: 251.9 bits;  conditional E-value: 6.1e-79
                     HHHHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-...TTT-TEEE---TTT--SHHHHHHHTTS-GGGS-SS---------HHH CS
  Glyco_transf_9   1 rlrlakaLrekayDlvidlqgllkSAllvralkapvriGldeesr..elaslfysrkvdkakgqhaVernraLfaqaldlpkpeskpelalslke 93 
                     r r+++ L++++yD+vid qgl+kSA+lv+ l+++v++Gld +s+  + as+ y++k+++ k+qhaVer+r+Lfa++l+++kp++++++a+  ++
      EHT98903.1  75 RVRFKRDLQSRHYDVVIDTQGLIKSAALVTRLAKGVKHGLDSRSArePFASWWYDKKHEVSKQQHAVERTRELFAKSLGYEKPQTQGDYAIAGHF 169
                     5799******************************************************************************************* PP

                     HHHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSE CS
  Glyco_transf_9  94 raaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakadl 188
                     r+ al+  +      y+vfl+++++d+K+Wpe++++el+e+lq +g++v L+++ae+ e ++a r+a+g+e   v++l++++Le++a+ la+a++
      EHT98903.1 170 RNVALQGEN-----AYLVFLHATTRDNKHWPESHWRELIERLQPTGLRVKLPWGAEH-EHQRAIRLAEGFE--HVEILPRLTLEAVAQQLAGAKA 256
                     ***999998.....9******************************************.***********99..********************** PP

                     EEEESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEESS--.----- CS
  Glyco_transf_9 189 vvgnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsleeeaspelk 240
                     vv++D+Gl+Hl+aAldrp+i+LYgptdp+ +g ++k++ i+ + +++ ++ +
      EHT98903.1 257 VVSVDTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQYIIKASNNELKTIH 308
                     ******************************************9888888766 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.6e-05      0.15     177     284 ..     171     278 ..     141     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.6e-05
                  H..--SS-EEEEE---HHHHTSHHHHHHHHHHHHHHHHHH--EEEEE--..HHHHHHHHHHHHH-TTEEEE----HHHHHHHHHC-SEEEES-HHHHH CS
  Epimerase_2 177 e..lkekkyvlvtlHrrenedeperlkeilealkalakekdvevvvpvhnnprtrkrlleeleelenvtlieplgyldflsllknaklvltdSgGiqe 272
                  +  l++++ +lv lH ++  +++    ++ e++++l+ +  ++v +p+  +++ ++r+++  e++e+v +++ l  +   + l+ ak+v++   G+  
   EHT98903.1 171 NvaLQGENAYLVFLHATTRDNKHWPESHWRELIERLQPT-GLRVKLPWG-AEHEHQRAIRLAEGFEHVEILPRLTLEAVAQQLAGAKAVVSVDTGLSH 266
                  235789999****************************97.99999**99.8888888888999***************************98888888 PP

                  HHHHCT--EEES CS
  Epimerase_2 273 Eapslgvpvvnl 284
                   +++l+ p ++l
   EHT98903.1 267 LTAALDRPNITL 278
                  888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2503.73
//
Query:       EHT98904.1  [L=359]
Description: putative glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-17   63.5   0.0    2.9e-17   62.8   0.0    1.3  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   1.6e-21   2.9e-17       3     216 ..     111     315 ..     109     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.6e-21
                     HHHHHTTTTT-SEEEE-S--SG..GGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT.--SHHHHHHHTTS-GGGS-SS---------HHHH CS
  Glyco_transf_9   3 rlakaLrekayDlvidlqgllk..SAllvralkapvriGldeesrelaslfysrkvdkak.gqhaVernraLfaqaldlpkpeskpelalslker 94 
                     ++ak+Lr ++yDl+id+ + l+  S  ++ra+ a+  iG++++        y++ +     ++h+ er+ +L+++ ++l+  ++  +l ls++  
      EHT98904.1 111 KVAKKLRLRNYDLLIDMGDKLSpfSLKFLRAINAKNVIGFNKAAF----NIYNHSITFTGfDKHITERYKFLMED-MGLENYSTAYDLHLSDAVI 200
                     899******************855667788999999999987654....88999999998788888888888876.5777778999********* PP

                     HHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHT..T-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSS CS
  Glyco_transf_9  95 aaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqek..gyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakad 187
                     ++  ++++ l+ +++iv++p +  +  +    + ++l+e l+++  +++++++g ++       ++i++      + + + tsL++  + +  ad
      EHT98904.1 201 NDVENFIENLSYDKMIVINPFTADSRRDMSLPQLNQLIEELKRNipNCAIIIIGDPSV-----IKKIKND----HAIISPFTSLSSSCKFIYLAD 286
                     ********88888***********999999999********997446******99999.....7888877....58******************* PP

                     EEEEESSHHHHHHHHTT--EEEEESSS-T CS
  Glyco_transf_9 188 lvvgnDSGlmHlAaAldrpviaLYgptdp 216
                     l++++D+ + H+AaA  +p+++LYg   +
      EHT98904.1 287 LIITPDTSIVHIAAAWHKPLVSLYGHDMH 315
                     *************************8665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2884.27
//
Query:       EHT98905.1  [L=366]
Description: ADP-heptose--lipooligosaccharide heptosyltransferase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-22   79.4   0.0    3.7e-22   78.9   0.0    1.2  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
     0.0012   18.9   0.4        1.6    8.6   0.0    2.2  2  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   4.1e-26   3.7e-22      98     225 ..     192     321 ..     155     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 4.1e-26
                     HHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT..-EEEE---GGGH..HHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSE CS
  Glyco_transf_9  98 ldaagllaerpyivflpgaskdaKrWpeekyaelaealqekg..yqvvLfgsaeae..eeeiaeriaagleekavnllgktsLeelaallakadl 188
                     +++++   + p+i+f+ gask++ +Wp e+++e a+++ e+     ++L+g+++++         + ++ ++ ++n  + t+L ela +++++d 
      EHT98905.1 192 KEKIT--TDNPIIGFQLGASKPDRCWPPEYFSETAQKILEHHsdAVIILTGGPDDKdkASDFYSFLPESYHNNIINKVASTNLIELASIINEMDI 284
                     33343..67899***********************999888755789999**999863344566788899999********************** PP

                     EEEESSHHHHHHHHTT--EEEEESSS-TTSS----TT CS
  Glyco_transf_9 189 vvgnDSGlmHlAaAldrpviaLYgptdpkrtgplsks 225
                      ++ D+G+ H+A ++++p+++L+   +p  tg++++ 
      EHT98905.1 285 LLTGDTGPLHVAISVKTPTLGLFVTANPYSTGAYQDL 321
                     **********************************975 PP

>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2   0.00019       1.7       2      74 ..      47     139 ..      46     166 .. 0.67
   2 !    8.6   0.0   0.00017       1.6     167     264 ..     189     288 ..     173     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00019
                     HHHHHHHHHHHHHHHHTT-EEEEEESSTTT--HHHHHHHHHTS-GGGEE............................................EE CS
  PS_pyruv_trans   2 yGDelilealvklLrelgpdaeiivltpdpsetkkllkvktpilkklskvllkrlrkkdi............................ddaddvi 68 
                     +GD l++  ++k +r+++pda+i+ + ++  +          il +  ++++   +++ +                            +d +++i
      EHT98905.1  47 LGDFLFNTPAIKSVRRRFPDAKITLIAHRKFSE---------ILQYGEDWNDIV-YWNNKiatiprilrqlkkkpnidlslilhshepYDYLCAI 131
                     69************************9443333.........222222222222.2222235667777777777888999999999999999999 PP

                     E--E.... CS
  PS_pyruv_trans  69 ivGgd..g 74 
                     ++G+    
      EHT98905.1 132 LSGSRlvI 139
                     99996541 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00017
                     HHHHS-...------------SS--EE---SSS---HH................................HH-TTS-HHHHHHHHHHHHHHHHHT CS
  PS_pyruv_trans 167 seilet...dkrkylrvakssekdledleellakvydllle.kgarllllpivkkdglelddlyllllraaakkekvtildrfaspeellsliar 257
                     ++++e+   d++      + s+ d+++++e++ +  +++le ++  +++l   + d +++ d y +l   +  +++++    +++  el+s+i +
      EHT98905.1 189 YKVKEKittDNPIIGFQLGASKPDRCWPPEYFSETAQKILEhHSDAVIILTGGPDDKDKASDFYSFLP--ESYHNNIINKVASTNLIELASIINE 281
                     444444446555555555667788999**************999999999999999999999999998..89999******************** PP

                     SSEEEE- CS
  PS_pyruv_trans 258 adfvits 264
                     +d+  t+
      EHT98905.1 282 MDILLTG 288
                     ***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2955.12
//
Query:       EHT98906.1  [L=303]
Description: putative polysaccharide deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-75  250.9   0.5      8e-75  250.7   0.5    1.1  1  Polysacc_deac_2  Divergent polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.7   0.5   4.5e-79     8e-75       1     212 [.      28     237 ..      28     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 250.7 bits;  conditional E-value: 4.5e-79
                      EEEEEETSHHCCHHHHHCSSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEE CS
  Polysacc_deac_2   1 ivIdDlGsnaktaeallalpapvtlAilPyaphskelaeaaraaghevllhlPmepksypkdpgpgaLlvsmseeeiekrleaalsrvpgavgv 94 
                      ivIdD+G++ ++++++l++p ++++A+lP+ap+++++a +a++ ghevl+hlPm p+s+ + +++++L+ +ms +ei + ++ a+++vp+avg+
       EHT98906.1  28 IVIDDVGYRPTEENKVLQMPQAISVAVLPDAPYARQMAIKAHQGGHEVLIHLPMAPLSK-QPLEKNTLTPEMSSAEIDRIIRSAVNNVPYAVGL 120
                      9*********************************************************6.68******************************** PP

                      EEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETTSS-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCH CS
  Polysacc_deac_2  95 nnhmGskftedeeameavleelkergllflDsrtsaksvaakvakelgvpvaerdvfLDnetdeaairkqlkklaklakkkGsaiaighprpet 188
                      nnhmGsk+t++   m++v+++l++++l+flDs+t+ +s+   +a+ ++v+v++r vfLD+++d +air+q+ +++kla++ G+aiaighp+p+t
       EHT98906.1 121 NNHMGSKMTSSLPGMQKVMQALNQYNLYFLDSMTIGNSQSVPAAQGTHVRVLKRRVFLDDSQDINAIRQQFSRAVKLAERDGYAIAIGHPHPNT 214
                      ************************************************************999******************************* PP

                      HHHHHHHHHHHHHCTEEE--HHHH CS
  Polysacc_deac_2 189 ieaLkewlpeleaegielvpvsal 212
                      +++L+++lp+l a+ i+lv++ +l
       EHT98906.1 215 VRVLQQMLPTLPAD-ITLVTPGQL 237
                      *************8.*****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2265.97
//
Query:       EHT98907.1  [L=433]
Description: protease with a role in cell division [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-27   94.4   0.1    8.3e-27   93.2   0.1    1.6  1  Peptidase_M23   Peptidase family M23
  ------ inclusion threshold ------
       0.11   11.3  45.9       0.45    9.3  15.7    2.4  2  Spc7            Spc7 kinetochore protein
          4    7.5  27.9          1    9.4   8.6    2.7  2  DUF1664         Protein of unknown function (DUF1664)
        5.3    7.4   7.1         25    5.2   0.3    3.1  3  Peptidase_M3_N  Oligopeptidase F
        6.5    6.8  36.6        1.1    9.3  15.6    2.3  2  DUF1043         Protein of unknown function (DUF1043)
        7.5    6.9  53.2        1.7    9.1  28.1    2.1  2  Fez1            Fez1
        8.2    4.9  32.5        1.7    7.2  15.3    2.1  2  AAA_13          AAA domain


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.1   3.2e-30   8.3e-27       3      96 .]     334     427 ..     333     427 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 3.2e-30
                    ESSEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +kG+ i+ap+gt+V+A+adG+V+ a++ +gyG vv+i+hg+g ++ly+ +++  v++g +VkaGq+I+ vg++g +  p L+feir++gkav+p
     EHT98907.1 334 WKGLVINAPEGTEVKAIADGRVLMADWLQGYGLVVVIEHGKGDMSLYGYNQSALVSVGAQVKAGQPIALVGTSGGRGTPSLYFEIRRQGKAVNP 427
                    68*************************99******************************************9999999***************9 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  15.7   0.00018      0.45     154     237 ..      50     132 ..      44     141 .. 0.76
   2 ?    7.3  22.2   0.00076       1.9     174     274 ..     178     278 ..     165     296 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00018
        Spc7 154 dkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie 237
                  k++L++ ++e+ e  ++++++ka+ ++ l++lq++++ + +  + +L+e+r++l++l+++i++  + +a l++q +++e+ ++
  EHT98907.1  50 NKAQLKSIQQEIAEKEKSVKAQKAQRSQLLNQLQSQEK-IIAQASRQLRETRNSLSALNNDIAQVTASVAHLEKQQAQQEKLLA 132
                 56788888888888888888888888888888888554.455577888888888888888888888888888888877776554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00076
        Spc7 174 eekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlk 272
                 +  ++ ++el+++++  e+ ++ +k  L + + + ++l++  +++kk l++l++ l++ ++++ e++++ s+l+++ia+aer  +e+   ++ e ++++
  EHT98907.1 178 TALQTTRKELAQQRASLEQKQQQQKSLLTQQQAQQDKLQQASAARKKTLTSLESALQKDQADLVEMRQNESRLQDKIARAEREARERAAREAREAEKVR 276
                 333344444444444444444446666666666666666666666666666666666666666666666666666666666666666666666665555 PP

        Spc7 273 ee 274
                 ++
  EHT98907.1 277 QR 278
                 43 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   8.6   0.00041         1      49     116 ..      53     123 ..      46     129 .. 0.75
   2 ?    4.3   9.2     0.015        39      55     121 ..     178     244 ..     169     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
     DUF1664  49 qleqvseslaatkrhLssr.i..drvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                 ql+++++++a+  +  +++     ++ ++l++q++i+++ ++++ e r+ ls++++d+ +v + v +le++
  EHT98907.1  53 QLKSIQQEIAEKEKSVKAQkAqrSQLLNQLQSQEKIIAQASRQLRETRNSLSALNNDIAQVTASVAHLEKQ 123
                 56666666655544443220200346678999************************************987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 ++l++t+++L+++ +++++k+++qk + ++ +++ +++++  ++ ++ ++s+++a ++ ++ l ++ 
  EHT98907.1 178 TALQTTRKELAQQRASLEQKQQQQKSLLTQQQAQQDKLQQASAARKKTLTSLESALQKDQADLVEMR 244
                 6899****************************************99999999999988777666665 PP

>> Peptidase_M3_N  Oligopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.011        27      41      65 ..      84     108 ..      49     110 .. 0.86
   2 ?   -2.4   0.1       2.4   6.2e+03      40      48 ..     125     133 ..     124     138 .. 0.81
   3 ?    5.2   0.3    0.0099        25       3      41 ..     170     208 ..     169     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
  Peptidase_M3_N  41 eeEklLaelsevggaawnifsdltn 65 
                      +Ek++a++s  ++   n +s l+n
      EHT98907.1  84 SQEKIIAQASRQLRETRNSLSALNN 108
                     68*********************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
  Peptidase_M3_N  40 eeeEklLae 48 
                     +++EklLae
      EHT98907.1 125 AQQEKLLAE 133
                     579999997 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0099
  Peptidase_M3_N   3 laldeekleellkeepelaeyrfyleeilrqkphtLsee 41 
                     + + +e + +l ++ +ela+ r +le+  +q++  L+++
      EHT98907.1 170 NTARQENITALQTTRKELAQQRASLEQKQQQQKSLLTQQ 208
                     566789999999999******************999876 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  13.0     0.033        85      30     103 ..      51     129 ..      46     147 .. 0.73
   2 ?    9.3  15.6   0.00041       1.1      20     103 ..     168     263 ..     161     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.033
     DUF1043  30 ekelekakaeleeqkqeledHfaqsaelLetlaedyq...kLyqhlaksseeLlp..eleeqelfqqkkleekkaeaee 103
                 +++l++ ++e++e ++ ++   aq ++lL++l+++ +   +  ++l ++ ++L    +   q +++ ++le+++a++e+
  EHT98907.1  51 KAQLKSIQQEIAEKEKSVKAQKAQRSQLLNQLQSQEKiiaQASRQLRETRNSLSAlnNDIAQVTASVAHLEKQQAQQEK 129
                 67999999************************99976222556699999999944424444555556666666665554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00041
     DUF1043  20 nsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL.............lpeleeqelfqqkkleekkaeaee 103
                   ++++q+++ + l+++++el++q++ le+  +q ++lL++ + + +kL+q  a  +++L             l e++++e  +q k++ +++ea+e
  EHT98907.1 168 YLNTARQENI-TALQTTRKELAQQRASLEQKQQQQKSLLTQQQAQQDKLQQASAARKKTLtslesalqkdqadLVEMRQNESRLQDKIARAEREARE 263
                 5566666666.579**********************************************8888888888887778888888888888887777766 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  28.1   0.00066       1.7      16     151 ..      51     201 ..      50     203 .. 0.72
   2 ?   -0.2  28.9      0.47   1.2e+03      27     148 ..     171     283 ..     169     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00066
        Fez1  16 KqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelre.elselsleeeea 113
                 K QLk +q+e+++k + + a kaq  +l ++l+++e+ i +++ +l+e  ++l  ++n++++ ++++  l++++ + e+ l+e  + ++++ +++  + 
  EHT98907.1  51 KAQLKSIQQEIAEKEKSVKAQKAQRSQLLNQLQSQEKIIAQASRQLRETRNSLSALNNDIAQVTASVAHLEKQQAQQEKLLAEQLDaAFRQGQHKGLQL 149
                 89*************************************************************999999999877777766554440444433333333 PP

        Fez1 114 a....lesdeakaqrqe................aeeleelkreverlraeLkeerqkk 151
                      +       qr+e                 ++l++ ++e+++ ra+L++++q++
  EHT98907.1 150 LlggeE------SQRSErilayfgylntarqenITALQTTRKELAQQRASLEQKQQQQ 201
                 344430......3444444555666555553335556666666666666666666654 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.47
        Fez1  27 tqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrq 125
                 t++ ++i al+++ +el ++  + e++ ++ ++ l++++++ +++++  + +k++ + l+  ++k +++l e+r++ s+l+ +          a+a+r+
  EHT98907.1 171 TARQENITALQTTRKELAQQRASLEQKQQQQKSLLTQQQAQQDKLQQASAARKKTLTSLESALQKDQADLVEMRQNESRLQDK---------IARAERE 260
                 67889999999999999999999999999999999999999999999999999999999999999999999999966664433.........3344444 PP

        Fez1 126 eaeeleelkreverlraeLkeer 148
                 ++e+++++ re e++r++  + +
  EHT98907.1 261 ARERAAREAREAEKVRQRQVQAK 283
                 44444444455555444333332 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   9.2    0.0073        19      96     173 ..      52     123 ..      44     150 .. 0.31
   2 ?    7.2  15.3   0.00066       1.7      85     204 ..     164     289 ..     153     307 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0073
      AAA_13  96 ekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkg...lkyeekfkerllkelkkk 173
                 ++++++++ei+++e++++a++aq +++ ++++  ek          + ++  +l+e+ ++   l+++  +    ++ l+k+
  EHT98907.1  52 AQLKSIQQEIAEKEKSVKAQKAQRSQLLNQLQSQEKI---------IAQASRQLRETRNSlsaLNNDIAQVTASVAHLEKQ 123
                 2222222222222222222222222222221111111.........11112222222222000222222222222222222 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00066
      AAA_13  85 ftLGeesiekqekieklkkeikkleekleaaeaqlqkaek...ekkklekele..deawkkivkkknsalsealkglkyeekfkerllkelkkknrkaa 178
                 +++G  ++  qe+i+ l++ +k+l ++  + e+++q++++   ++++ +++l+  + a kk +++ +sal+++   l + +++++rl +++++++r+a 
  EHT98907.1 164 AYFGYLNTARQENITALQTTRKELAQQRASLEQKQQQQKSlltQQQAQQDKLQqaSAARKKTLTSLESALQKDQADLVEMRQNESRLQDKIARAEREAR 262
                 577777888888888888777777766444444444444444365666666654455666677788888888888888888899999999999988888 PP

      AAA_13 179 ellsdeelkak.letvesenlpelapl 204
                 e+   e ++a+ + + + +++++ ++ 
  EHT98907.1 263 ERAAREAREAEkVRQRQVQAKAKGSSY 289
                 877777776654555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3416  (0.190529); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                       211  (0.0117686); expected 17.9 (0.001)
Passed Fwd filter:                        95  (0.00529868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.49u 0.41s 00:00:01.90 Elapsed: 00:00:00.60
# Mc/sec: 2177.63
//
Query:       EHT98908.1  [L=143]
Description: putative rhodanese-related sulfurtransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-19   68.1   0.0    1.1e-18   67.7   0.0    1.2  1  Rhodanese  Rhodanese-like domain
  ------ inclusion threshold ------
        0.1   11.9   1.9       0.17   11.1   0.3    1.8  2  MSP1a      Major surface protein 1a (MSP1a)


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.2e-22   1.1e-18       3     105 ..      43     133 ..      41     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.2e-22
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGf 101
                  e+ +l++k++++++DvR++++Y kghI gAvnv            +  +  + el+++   + ++++v+c++g++aa  aa l ++G+++vsvl+ G+
  EHT98908.1  43 GEATRLINKEDAVVVDVRSRDDYRKGHISGAVNV---------AAADIKKGSFGELEKH---KTQPIIVVCATGQSAADPAAHLSAAGFNQVSVLKDGI 129
                 6788999***999*********************.........5666666677777776...9*************8888888888**988******** PP

   Rhodanese 102 kawk 105
                 ++w+
  EHT98908.1 130 SGWS 133
                 ***8 PP

>> MSP1a  Major surface protein 1a (MSP1a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   1.9e-05      0.17      59     112 ..      16      69 ..       8      82 .. 0.76
   2 ?    0.5   0.1     0.033     3e+02     192     241 ..      85     133 ..      71     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
       MSP1a  59 LalvvLLpLlgaaaviavadesedkaagdaarvvkeessr.elsrelseDrsklk 112
                 La vvLL L+ +++v  +  + + +  g+a+r++++e +     r + +D  k +
  EHT98908.1  16 LAWVVLLILVIVTTVKGMFSKVKTISRGEATRLINKEDAVvVDVRSR-DDYRKGH 69 
                 9*******************************987766550555555.4444433 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.033
       MSP1a 192 sgGsqedsaqvpttsvPaaessavaPdtivvsvspdsvatlGagvalgla 241
                 s G+ e     p   v a+  sa  P++ +++   + v+ l  g++ g +
  EHT98908.1  85 SFGELEKHKTQPIIVVCATGQSAADPAAHLSAAGFNQVSVLKDGIS-GWS 133
                 5667777777788888888888889999999988888888888877.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.84
# Mc/sec: 512.98
//
Query:       EHT98909.1  [L=84]
Description: glutaredoxin 3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-25   89.2   0.0    1.8e-25   88.9   0.0    1.1  1  Glutaredoxin   Glutaredoxin
    7.6e-09   35.9   0.0    8.6e-09   35.7   0.0    1.1  1  GST_N_3        Glutathione S-transferase, N-terminal domain
    2.5e-07   30.9   0.0      3e-07   30.6   0.0    1.1  1  GST_N_2        Glutathione S-transferase, N-terminal domain
    1.1e-05   25.4   0.0    1.5e-05   25.0   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
    0.00018   21.8   0.0     0.0002   21.7   0.0    1.1  1  DUF836         Glutaredoxin-like domain (DUF836)
     0.0034   17.6   0.4        1.8    8.7   0.0    2.0  2  Thioredoxin_4  Thioredoxin
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.034   14.3   0.0    1.3  1  SH3BGR         SH3-binding, glutamic acid-rich protein
      0.044   14.1   0.0      0.049   14.0   0.0    1.1  1  GST_N          Glutathione S-transferase, N-terminal domain
      0.049   13.4   0.1        6.9    6.4   0.0    2.0  2  DSBA           DSBA-like thioredoxin domain
       0.15   12.6   0.3       0.39   11.2   0.3    1.7  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.0   9.8e-29   1.8e-25       1      60 []       4      63 ..       4      63 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 9.8e-29
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60
                  v+++ kptCpyC++ak+lL+e+g++f+ei +d d++ ree+ ++sg+ tvPq+fidg+h+
    EHT98909.1  4 VEIYIKPTCPYCHRAKALLNEKGAAFQEILIDGDMAKREEMIKRSGRTTVPQIFIDGQHI 63
                  89*********************************************************8 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.8e-12   8.6e-09       2      64 ..       7      70 ..       6      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.8e-12
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTT.HHHHHHH-TT--SSEEETTS-EEESHHHHH CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgeh.deellaknplgkvPvLeddgealtdSlaIi 64
                y  p++py+ r++ +Lnekg ++++  ++++   +ee+ + +++ +vP + +dg+ + + ++++
  EHT98909.1  7 YIKPTCPYCHRAKALLNEKGAAFQEILIDGDMAkREEMIKRSGRTTVPQIFIDGQHIGGCDDLM 70
                7789*************************99866****************99999888777665 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.7e-10     3e-07       2      58 ..      12      64 ..      11      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.7e-10
                -HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEE CS
     GST_N_2  2 CPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvin 58
                CP++hR+  +l++kg  ++ + +   + ++ k ee  + ++r+tVP +++ dgq i 
  EHT98909.1 12 CPYCHRAKALLNEKGAAFQEILI---DGDMAKREEMIKRSGRTTVPQIFI-DGQHIG 64
                *******************9999...46788889***************9.888765 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.2e-09   1.5e-05       2      58 ..       3      61 ..       2      64 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8.2e-09
                   EEEE.ESSSSTTCHHHHHHHHHHCHCC.TCECEEECCTTHHHHHHCT-SSSSEEECTTC CS
  Thioredoxin_3  2 eikv.lgpgCakCpklekavkeaaaek.gikaevekvtdfeeiekygVmsvPalvidgk 58
                   ++++ ++p+C++C++++++++e  a   +i ++ + ++  e i++ g ++vP+++idg+
     EHT98909.1  3 NVEIyIKPTCPYCHRAKALLNEKGAAFqEILIDGDMAKREEMIKRSGRTTVPQIFIDGQ 61
                   799*99********8888777643333145554444555555677888**********8 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.1e-07    0.0002       2      57 ..       4      60 ..       3      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
                EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CC.CHCCCCTTTTEEEECT CS
      DUF836  2 ltLyskpgChlCeqakekLkelkleegleleviDIakdee.leakYgleipvlaleg 57
                + +y kp C+ C++ak++L e + + +  l   D ak+ee  ++    ++p+++++g
  EHT98909.1  4 VEIYIKPTCPYCHRAKALLNEKGAAFQEILIDGDMAKREEmIKRSGRTTVPQIFIDG 60
                789*****************8776666446666777888856666778899999998 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.3    0.0015       2.6      17      35 ..       4      22 ..       2      33 .. 0.83
   2 !    8.7   0.0     0.001       1.8     116     152 ..      28      64 ..      18      75 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                   EEEEE-TT-HHHHHHHHHH CS
  Thioredoxin_4 17 vieyedlrCphCakfeeev 35
                   v++y   +Cp+C + +  +
     EHT98909.1  4 VEIYIKPTCPYCHRAKALL 22
                   799*********9987655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.001
                    -------HHHHHHHHHHHHHHT--SS-EEEETTEEE- CS
  Thioredoxin_4 116 cleeekldalveaeskeakkagiestPtfiingekve 152
                    +++e  +d ++++  ++ k++g +++P ++i+g+ + 
     EHT98909.1  28 AFQEILIDGDMAKREEMIKRSGRTTVPQIFIDGQHIG 64 
                    466666777888888888***************9986 PP

>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.9e-05     0.034      24      91 ..      19      77 ..      12      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                HHHHHHTT--EEEEETTT-HHHHHHHHHCST-CCCS-SSSS--S-EEEETTEEEEEHHHHHHHHTTT- CS
      SH3BGR 24 lriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakeent 91
                  +L+ k   f+e+ i  d ++re+m +++         g+++ Pqif + +++G  d+ +  ++++ 
  EHT98909.1 19 KALLNEKGAAFQEILIDGDMAKREEMIKRS---------GRTTVPQIFIDGQHIGGCDDLMALNDRQG 77
                568999999******************887.........57889***********9999887776655 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.7e-05     0.049       3      55 ..       4      54 ..       2      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SS CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvP 55
                +  y  +++p+ hr+++ll +kg+ ++++ +d + +  k++e +k      vP
  EHT98909.1  4 VEIYIKPTCPYCHRAKALLNEKGAAFQEILIDGDMA--KREEMIKRSGRTTVP 54
                6679999*********************99995444..346666665555555 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0038       6.9       2      22 ..       4      24 ..       3      35 .. 0.83
   2 ?    6.0   0.0     0.005         9     151     190 ..      36      74 ..      20      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0038
                EEEEEBTTBHHHHHHHHHHHH CS
        DSBA  2 vdeffDvlCPyCylgkerlek 22
                v+++    CPyC+ +k+ l++
  EHT98909.1  4 VEIYIKPTCPYCHRAKALLNE 24
                78899999*******987765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHTT-SSSSEEEETTCEEEESSSSHHHHHH CS
        DSBA 151 eavrentaaaqslgvtGvPtvvvdgkrmvfGadrldtlad 190
                  ++++ +++ ++ g t vP +++dg+  + G d+l  l d
  EHT98909.1  36 GDMAKREEMIKRSGRTTVPQIFIDGQ-HIGGCDDLMALND 74 
                 56778888999999999*********.8999999988876 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00022      0.39      13      36 ..       8      32 ..       4      67 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
  Thioredoxin_2 13 tdpdCpyCkklkkelkel.ddvtvr 36
                    +p+CpyC++ k+ l e   +++++
     EHT98909.1  8 IKPTCPYCHRAKALLNEKgAAFQEI 32
                   589*******999666654555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 591.25
//
Query:       EHT98910.1  [L=154]
Description: protein export chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-58  195.0   0.2    6.2e-58  194.7   0.2    1.0  1  SecB      Preprotein translocase subunit SecB


Domain annotation for each model (and alignments):
>> SecB  Preprotein translocase subunit SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.7   0.2   3.4e-62   6.2e-58       3     142 .]       6     144 ..       4     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.7 bits;  conditional E-value: 3.4e-62
        SecB   3 eaqpqlriqkqYvkDlSfenpnapeifleaeeqPevkvnlnveakkleeevyevvlkitvtakaeektlFlvevkyaGiftienipeeqlepllliecP 101
                 ++++q++iq++Y+kD+Sfe+pnap++f++ e++P+vk++l++ +++l++evyevvl++tvta+++e+t+Fl+ev++aGifti +i+ +q++++l+++cP
  EHT98910.1   6 TNEMQFQIQRVYTKDISFEAPNAPQVFQK-EWEPDVKLDLDTASSQLADEVYEVVLRVTVTATVGEDTAFLCEVQQAGIFTIGGIEGTQMAHCLGAYCP 103
                 6789***********************88.********************************************************************* PP

        SecB 102 rilFPyaReivsdlvreggfppllLepinFealyqqqlaqq 142
                 +ilFPyaRe++++lv++g+fp+l+L+p+nF+al+++ l+qq
  EHT98910.1 104 NILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQ 144
                 ************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1192.89
//
Query:       EHT98911.1  [L=338]
Description: glycerol-3-phosphate dehydrogenase (NAD+) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-52  176.3   1.1    6.3e-52  175.6   1.1    1.3  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
    1.2e-48  165.0   0.0    1.7e-48  164.6   0.0    1.2  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    4.2e-10   39.5   0.0    7.2e-10   38.7   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
    0.00025   21.3   0.0    0.00072   19.7   0.0    1.8  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00055   20.5   0.0     0.0025   18.4   0.0    2.1  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00069   18.8   0.0     0.0011   18.1   0.0    1.3  1  GIDA            Glucose inhibited division protein A
     0.0022   17.6   0.0      0.013   15.1   0.0    2.3  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0062   16.4   0.0      0.011   15.6   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0072   16.2   0.1      0.019   14.8   0.0    1.8  2  Rossmann-like   Rossmann-like domain
  ------ inclusion threshold ------
      0.015   15.5   0.1       0.06   13.6   0.0    2.1  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.025   13.8   0.0      0.049   12.9   0.0    1.5  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.025   14.8   0.0       0.15   12.4   0.0    2.2  3  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   1.1   4.2e-55   6.3e-52       1     140 [.     183     322 ..     183     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 4.2e-55
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSSGGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHCT--HHHHHH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgakpetflglaglgDlivtctsgksRNrrfGeelgkgesleeiek 95 
                     D iGv+l+ga+KNviAi+aG++dg+g+g+n++ alitrglaEm+rl+ alga+++tf+g+aglgDl++tct+++sRNrrfG++lg+ge+++++++
      EHT98911.1 183 DFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADATTFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGEDVDSAQR 277
                     89********************************************************************************************* PP

                     HHCC--HHHHHHHHHHHHHHHTT.G.HHHHHHHHHHHS---HHHH CS
  NAD_Gly3P_dh_C  96 elnqvleGvetakevyellkkkgvemplleavykilyegkspeel 140
                      ++qv+eG++ +kev++l+ + gvemp++e++y++ly gk+++++
      EHT98911.1 278 IIGQVVEGYRNTKEVKALAARTGVEMPITEQIYQVLYCGKPARDA 322
                     ***************************************998875 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.0   1.1e-51   1.7e-48       1     156 [.       6     162 ..       6     163 .. 0.99

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 1.1e-51
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--T CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkk 95 
                     +i+v+GaGs+GtalA++la+ngh+v lw+++++++ +++++++n ++Lp++++p+nl++++dl+++++ ++ +++vvPs+++ +vl+++k+ l++
      EHT98911.1   6 SISVIGAGSYGTALAITLARNGHPVLLWGHNPAHMAQLQSDRCNRAFLPDVTFPDNLTVEPDLNTVIAASRDLLVVVPSHVFGDVLTQIKPGLRD 100
                     599******************************************************************************************** PP

                     T-EEEE---SEET.TTEEHHHHHHHHH-S--.EEEEESS--HHHHHTT--EEEEEEES-HHH CS
  NAD_Gly3P_dh_N  96 kailvsliKGieegtlkllsevieeelkeek.vavlsGpslAeEvakgkptavviaskdkea 156
                     + ++v+++KG+e++t +ll++v++++l+e+  +av+sGp++A+E+a+g pta+ +a++d ++
      EHT98911.1 101 DSRIVWATKGLEKETGRLLQDVARDILGETIpLAVISGPTFAKELAAGLPTAIALAATDAQF 162
                     ******************************99*************************99986 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   4.8e-13   7.2e-10       1     128 [.       7     134 ..       7     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4.8e-13
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvv 98 
                 i ++GaG+ G+ la +La++g++v l+++++ ++++l+++ ++  +   +++++++ +++++ +  ++    ++v v++    ++l +ikp l +++ +
  EHT98911.1   7 ISVIGAGSYGTALAITLARNGHPVLLWGHNPaHMAQLQSDRCNRAFLP-DVTFPDNLTVEPDLNTVIAASRDLLVVVPSHVFGDVLTQIKPGLRDDSRI 104
                 789***************************************999999.999999999999966677777778999*********************** PP

                 EEESSSSCHH.HHHTTTSTTSEEEEEEEE-E CS
        ApbA  99 lllqNGlghe.eelrealpkprvlggvtthg 128
                 +    Gl++e  +l + + ++ +lg ++++ 
  EHT98911.1 105 VWATKGLEKEtGRLLQDV-ARDILGETIPLA 134
                 ******999964444444.245666555555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.8e-07   0.00072       2     100 ..       7     118 ..       6     129 .. 0.80
   2 ?   -2.2   0.0       2.8   4.2e+03      59      72 ..     262     275 ..     231     302 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.8e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT..............EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg..............akaaesieelvasldvvitmvkagkavdeviegllealkkg 83 
                    i +iG G  G+ +a  l+++g+ v ++ ++++++ +l +++              +++  +++ ++a+ +  +++v++ +   +v++++++ l+ +
     EHT98911.1   7 ISVIGAGSYGTALAITLARNGHPVLLWGHNPAHMAQLQSDRcnraflpdvtfpdnLTVEPDLNTVIAASRDLLVVVPS-HVFGDVLTQIKPGLRDD 101
                    89************************************9998888888888888777777777777777777777776.56778888888888888 PP

                    -EEEE-S---HHHHHHH CS
  NAD_binding_2  84 dilidgstsspedtrel 100
                    + ++  +    ++t +l
     EHT98911.1 102 SRIVWATKGLEKETGRL 118
                    87776666555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.8
                    EEE-SSSHHHHHHH CS
  NAD_binding_2  59 vitmvkagkavdev 72 
                      +m+ +g++vd+ 
     EHT98911.1 262 FGMMLGQGEDVDSA 275
                    44566666666553 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.7e-06    0.0025       2      92 ..       7     105 ..       6     110 .. 0.80
   2 ?   -1.8   0.0       3.3   4.9e+03      28      50 ..     282     303 ..     277     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.7e-06
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHH.HHHC............-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeela.eelg............vkvtavdneeaaeeadvvvlavkpedveevlselakd 84 
                    i +iGaG+ g ala  l+++g   h +++    np  +++l+ ++ +             +v++ d +++++ +  +++ v+ +++ +vl+++++ 
     EHT98911.1   7 ISVIGAGSYGTALAITLARNG---HPVLLW-GHNPAHMAQLQsDRCNraflpdvtfpdnLTVEP-DLNTVIAASRDLLVVVPSHVFGDVLTQIKPG 97 
                    89*******************...****77.788888777773555599999999999877888.7777777677777889999999999999777 PP

                    HHTTSEEE CS
  F420_oxidored  85 alkgklvi 92 
                    +  ++ ++
     EHT98911.1  98 LRDDSRIV 105
                    76666555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.3
                    EEEEEESSCCCHHHHHHHHC-EE CS
  F420_oxidored  28 ivvansrnpekaeelaeelgvkv 50 
                    +v +  rn +++++la++ gv++
     EHT98911.1 282 VVEG-YRNTKEVKALAARTGVEM 303
                    6655.899999999999998765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.6e-07    0.0011       2      38 ..       7      43 ..       6      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.6e-07
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT-- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiael 38
                + ViG+G  G++ A+++ar G++vlL  h+  ++a+l
  EHT98911.1  7 ISVIGAGSYGTALAITLARNGHPVLLWGHNPAHMAQL 43
                78*************************9999999887 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.6e-06     0.013       2      44 ..       6      48 ..       5      83 .. 0.95
   2 ?   -1.0   0.0      0.75   1.1e+03     137     156 ..     168     185 ..     150     198 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.6e-06
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS- CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgki 44
                     isviG+G  G   a+ la+ gh v++   + ++ ++l+s+++
      EHT98911.1  6 SISVIGAGSYGTALAITLARNGHPVLLWGHNPAHMAQLQSDRC 48
                    69*************************************9988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.75
                     HHHCSS-.TTCEEEEE----- CS
  UDPG_MGDP_dh_N 137 eeaskkk.gvdfdvvsnPEfl 156
                     ++    + g++f+v  nP f+
      EHT98911.1 168 QRL---HcGKSFRVYNNPDFI 185
                     322...14789********96 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.4e-06     0.011       2      37 ..       7      42 ..       6      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.4e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealek 37
                + viGaG  G+ +a  +a++g++V l   +++ +++
  EHT98911.1  7 ISVIGAGSYGTALAITLARNGHPVLLWGHNPAHMAQ 42
                89************************9999887766 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.019      12      58 ..       6      57 ..       2     113 .. 0.60
   2 ?   -3.6   0.0       6.4   9.6e+03       8      27 ..     215     234 ..     211     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvv..gis.a.isaa.sreraerrlPdvp 58
                   s+ +i+aG  Gtal+ +l+r gh v   g + a +++  s +  ++ lPdv+
     EHT98911.1  6 SISVIGAGSYGTALAITLARNGHPVLlwGHNpAhMAQLqSDRCNRAFLPDVT 57
                   7899*******************99622222120222213333445567664 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.4
  Rossmann-like   8 sarlsvGiisaGrvGtalga 27 
                    +a ++ G+    r+G+alga
     EHT98911.1 215 TALITRGLAEMSRLGAALGA 234
                    55566677778888888886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     4e-05      0.06       1      27 [.       9      35 ..       9      47 .. 0.92
   2 ?   -2.6   0.0       4.7     7e+03       7      20 ..     147     160 ..     146     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   ++GaG  G ++A +La++g+ vll+ +
     EHT98911.1  9 VIGAGSYGTALAITLARNGHPVLLWGH 35
                   8**********************9965 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.7
                    HHHHHHHHHHCCTE CS
  NAD_binding_8   7 sGlvaAylLakagf 20 
                    +Gl +A +La  ++
     EHT98911.1 147 AGLPTAIALAATDA 160
                    67777777776433 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.3e-05     0.049       2      32 ..       6      36 ..       5      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.3e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvele 32
                 ++ viG+G  G+a+a+tla++g+ v+l + +
   EHT98911.1  6 SISVIGAGSYGTALAITLARNGHPVLLWGHN 36
                 578***********************98644 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.8e-05      0.15       2      53 ..       8      60 ..       7      66 .. 0.85
   2 ?   -1.3   0.0       1.8   2.6e+03       7      54 ..     116     162 ..     115     167 .. 0.68
   3 ?   -3.6   0.0       8.8   1.3e+04      64      83 ..     247     266 ..     247     284 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSE.EEES-TTSHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreegle.vvvgdatdee 53
                 +iG+G  G++la +L ++g++v++  ++++++++l+ + ++ ++  d+t ++
  EHT98911.1  8 SVIGAGSYGTALAITLARNGHPVLLWGHNPAHMAQLQSDRCNrAFLPDVTFPD 60
                69****************6657**************99886658778887776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.8
                 SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHH CS
      TrkA_N   7 GrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeev 54 
                 Gr+ + +a+ +  + ++  vi   +  ++el++   +++   atd ++
  EHT98911.1 116 GRLLQDVARDILGETIPLAVISG-PTFAKELAAGLPTAIALAATDAQF 162
                 55666677777776654455544.788888888888888888888766 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8.8
                 SEEEE-SSSHHHHHHHHHHH CS
      TrkA_N  64 daviaatgddeanilavlla 83 
                 d+v+++t++   n    +++
  EHT98911.1 247 DLVLTCTDNQSRNRRFGMML 266
                 57888888888877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2823.49
//
Query:       EHT98912.1  [L=273]
Description: serine acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-40  135.9   0.2    8.7e-40  135.3   0.2    1.3  1  SATase_N         Serine acetyltransferase, N-terminal
    1.2e-11   43.8   6.4    6.6e-10   38.3   0.9    2.9  2  Hexapep          Bacterial transferase hexapeptide (six repea
      5e-05   23.0   5.6    0.00058   19.5   1.1    2.5  2  Hexapep_2        Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
        3.4    7.5   7.3        1.1    9.1   3.6    2.2  2  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.2   1.9e-43   8.7e-40       1     105 []       9     113 ..       9     113 .. 1.00

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 1.9e-43
                 HHHHHHHHHHHHHHH-GGGHHHHHHHTTT-SSHHHHHHHHHHHHH-BSSS-HHHHHHHHHHHHHH-THHHHHHHHHHHHHHHH-TT---THHHHHH-HH CS
    SATase_N   1 vWeslraeaeeaaekepllasflyatilsheslesaLaflLanklasstlsaeqlrelfeealeadpeiveaaraDlkAvlerDpAcksylepllyfKG 99 
                 vW++++aea+++a+ ep+lasf++at+l+he+l saL+++Lankla++ ++a ++re++eea+++dp+++++a++D++Av++rDpA+++y++plly+KG
  EHT98912.1   9 VWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLANPIMPAIAIREVVEEAYRKDPSMIASAACDIQAVRQRDPAVDKYSTPLLYLKG 107
                 8************************************************************************************************** PP

                 HHHHH. CS
    SATase_N 100 FhAlqa 105
                 FhAlqa
  EHT98912.1 108 FHALQA 113
                 *****8 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0014       6.2       2      23 ..     162     183 ..     161     184 .. 0.81
   2 !   38.3   0.9   1.5e-13   6.6e-10       1      34 [.     193     226 ..     193     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0014
                 EEEETTEEE-TTEEEETTEEE- CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIG 23 
                 +vIG+ +++ + + i+  V++G
  EHT98912.1 162 IVIGETAVVENDVSILQSVTLG 183
                 6889999999999988888887 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 1.5e-13
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +++I ++v+Ig++a+i+gn+++G+++kIgag+v+
  EHT98912.1 193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV 226
                 689******************************9 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.2    0.0034        15      16      32 ..     160     176 ..     149     178 .. 0.89
   2 !   19.5   1.1   1.3e-07   0.00058       6      33 ..     198     227 ..     195     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0034
                 ESEEE-TT-EE-TT-EE CS
   Hexapep_2  16 iGvslGdncvvgaGvvi 32 
                 +G+ +G+ +vv++ v i
  EHT98912.1 160 TGIVIGETAVVENDVSI 176
                 59***********8887 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.3e-07
                 TT-EE-TT-EE.S.EEE-TT-EE-TT-EE- CS
   Hexapep_2   6 dnCliGanagi.G.vslGdncvvgaGvvit 33 
                 + ++iGa a i G +++G+++++gaG+v+ 
  EHT98912.1 198 EGVMIGAGAKIlGnIEVGRGAKIGAGSVVL 227
                 6799******9999**************95 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.87   3.9e+03      34      40 ..     159     165 ..     149     168 .. 0.75
   2 ?    9.1   3.6   0.00024       1.1      14      35 ..     204     224 ..     197     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.87
  Gly-zipper_OmpA  34 asGavaG 40 
                      a+G+v+G
       EHT98912.1 159 ATGIVIG 165
                      6788877 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00024
  Gly-zipper_OmpA  14 aGA.avGaitGsaGtGAaiGAas 35 
                      aGA ++G+i+   G+GA+iGA+s
       EHT98912.1 204 AGAkILGNIE--VGRGAKIGAGS 224
                      4663589997..9*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2208.17
//
Query:       EHT98913.1  [L=157]
Description: putative rRNA methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-33  116.3   0.0    1.3e-33  116.2   0.0    1.0  1  SpoU_methylase  SpoU rRNA Methylase family
     0.0066   16.4   0.9     0.0082   16.1   0.0    1.7  2  Malate_DH       Malate dehydrogenase enzyme


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.4e-37   1.3e-33       2     142 .]       2     142 ..       1     142 [. 0.96

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 1.4e-37
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEGC.CSHHHT CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgksls.eidlke 95 
                     l++vl+e+e+p N+G+i+R+++++g+ +l+l++p +++ ++++++ra+++++e   +k +++++++++  + +  +l+a+++kg++ +  +++++
      EHT98913.1   2 LNIVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKFHADFQAFMTTEQPA--RLFALTTKGTPAHsAVAWQQ 93 
                     79************************.*****************************************98888..*******999999677**** PP

                     TEEEEEEBTTTBS-HHHHCTSS..EEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  96 kvalvfGnEdkGlsnellelad..rlvkIpmsgeveSLNvavAvailly 142
                       +l+fG+E++Gl+ e+l+ +   + ++Ipm+ e +S+N+++Av++++y
      EHT98913.1  94 GDYLLFGPESRGLPAEVLQTLPaeQKIRIPMRAESRSMNLSNAVSVVVY 142
                     ******************9977668**********************98 PP

>> Malate_DH  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.2e-07    0.0082      21      31 ..      44      54 ..      40      55 .. 0.93
   2 ?   -3.2   0.2         1   9.2e+03       1       8 [.      67      74 ..      67      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.2e-07
   Malate_DH 21 LRkAALeYHEF 31
                LR+A L+YHEF
  EHT98913.1 44 LRRAGLDYHEF 54
                9********** PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
   Malate_DH  1 mTsPQpaa 8 
                mT  Qpa+
  EHT98913.1 67 MTTEQPAR 74
                78889986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1279.08
//
Query:       EHT98914.1  [L=459]
Description: sensory histidine kinase in two-component regulatory system with CpxR [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-21   75.6   0.0    2.3e-20   73.2   0.0    2.1  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    3.1e-14   52.7   4.9    7.4e-14   51.5   3.6    2.3  3  HisKA        His Kinase A (phospho-acceptor) domain
    1.2e-10   41.9   0.0    2.5e-10   40.8   0.0    1.6  1  CpxA_peri    Two-component sensor protein CpxA, periplasmic d
    1.6e-10   41.1   0.4      7e-10   39.1   0.0    2.3  2  HAMP         HAMP domain
    5.1e-05   23.1   0.0      9e-05   22.3   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0003   20.7   0.0    0.00057   19.8   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.63   1.9e+03       7      31 ..     102     128 ..      99     142 .. 0.77
   2 !   73.2   0.0   7.6e-24   2.3e-20       3     110 ..     347     453 ..     345     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHH..HSTTTEEEEEE CS
   HATPase_c   7 rqiisnlvdNavkf..atkageievei 31 
                 +q+i+n+++ ++++   +k++ ++ve+
  EHT98914.1 102 MQVIRNFIGQSDNAdhPQKKKYGRVEM 128
                 69999*999999985434777777766 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 7.6e-24
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 +  L+ ++ n+v Na+++  + ++i+v+ +++   +++ v D+G+G+++ed++++f +f++ d++++r++ggtGlGl+iv+  +++++G ++ +++p +
  EHT98914.1 347 PHALESALENIVRNALRY--SHTHISVSFSVDISGITVHVDDDGPGVSPEDREQIFRPFYRtDEARDRESGGTGLGLAIVETAIQQHRGWVKADDSPLG 443
                 6789999**********8..789999999987789***************************999*****************7777************* PP

                 EEEEEEEEES CS
   HATPase_c 101 Gttftftlpl 110
                 G + t++lpl
  EHT98914.1 444 GLRLTIWLPL 453
                 ********98 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   3.6   2.5e-17   7.4e-14       3      65 ..     240     298 ..     239     300 .. 0.92
   2 ?   -2.8   0.0       2.2   6.7e+03      44      66 ..     303     325 ..     301     326 .. 0.83
   3 ?   -2.6   0.0       1.9   5.7e+03      38      50 ..     351     363 ..     343     367 .. 0.50

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 2.5e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 +r+l++++HELrtPL+ +++++ +L+r    +    + le+ie ea+rld +++dlL lsr +
  EHT98914.1 240 QRLLSDISHELRTPLTRLQLATALLRR----RHGEGKELERIETEAQRLDGMINDLLVLSRTQ 298
                 79***********************99....3777778**********************976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA  44 iesearrldhlvedlLdlsriea 66 
                 ++sea   ++l + +L+ +r ea
  EHT98914.1 303 LVSEAMKANQLWNGVLEDARFEA 325
                 67899999999999999999887 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHH CS
       HisKA  38 keyletiesearr 50 
                 + +le i+++a r
  EHT98914.1 351 ESALENIVRNALR 363
                 3344555554444 PP

>> CpxA_peri  Two-component sensor protein CpxA, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   8.4e-14   2.5e-10      52     118 ..      82     145 ..      48     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 8.4e-14
                 S-EEEEE-TTS-EE----S-HHHHHHHHHHHHH-S-TTS-EEEEETTEEEEEEEEEEETTEEEEEEE CS
   CpxA_peri  52 rlrlfltdldgeilttkkradfklkalrnfvtsiespekPkqkLYGrymlaGPlpitlakeelllyv 118
                  +rl l + +g+++  +   + +++ +rnf+  +++ ++P++k YGr+ + GP+ ++  ++++ ly+
  EHT98914.1  82 GQRLLLVTSEGRVIGAQ---HNEMQVIRNFIGQSDNADHPQKKKYGRVEMVGPFAVRDGEDNYQLYL 145
                 68999**********95...458999***************************************97 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   2.3e-13     7e-10       1      53 []     181     234 ..     181     234 .. 0.97
   2 ?   -1.6   0.4       1.2   3.6e+03      23      23 ..     269     269 ..     246     291 .. 0.57

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2.3e-13
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldrLre 53 
                 +la+++ rP r+L+ aa+++a+G+l+++++  sg+ E+ + + +fN+M+ +L++
  EHT98914.1 181 WLAWSLARPARKLKYAADEVASGNLRQHPELeSGPQEFLAAGSSFNQMVSALER 234
                 89***********************************************99985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 T CS
        HAMP  23 G 23 
                 G
  EHT98914.1 269 G 269
                 2 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     3e-08     9e-05       3      81 ..     350     423 ..     348     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3e-08
  HATPase_c_3   3 lekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAs 81 
                  le+Al  +v+N+l  + ++++++++ +  +  ++ + DdG G+s+e+ ++ +r+   + ea    +  G  G+G  lA+
   EHT98914.1 350 LESALENIVRNALRYSHTHISVSFSVDI-SGITVHVDDDGPGVSPEDREQIFRPFYRTDEA--RDRESGGTGLG--LAI 423
                  589**********************986.7899********************98888884..45666777887..555 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.9e-07   0.00057      39     107 ..     353     426 ..     316     432 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.9e-07
  HATPase_c_2  39 actNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikg 107
                  a+ N+v+ a +  +  +++v++++d   +tv v D+Gpg  pe++++   + +      + +    G+Gla++++
   EHT98914.1 353 ALENIVRNALRYSH-THISVSFSVDISGITVHVDDDGPGVSPEDREQIFRPFYrtdearDRESGGTGLGLAIVET 426
                  55566665555444.78889999****************999987765554447777666666667788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3244.97
//
Query:       EHT98915.1  [L=232]
Description: DNA-binding response regulator in two-component regulatory system with CpxA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-30  105.8   0.3    2.4e-30  105.0   0.2    1.5  2  Response_reg  Response regulator receiver domain
      3e-21   75.3   0.4    7.6e-21   74.0   0.1    1.8  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0049   17.2   0.2     0.0079   16.6   0.1    1.4  1  FleQ          Flagellar regulatory protein FleQ
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.19   11.8   0.0    1.4  1  DUF2325       Uncharacterized protein conserved in bacteria (
        0.2   11.7   0.0       0.45   10.6   0.0    1.6  2  BRCT_3        BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.2   6.6e-34   2.4e-30       1     112 []       4     112 ..       4     112 .. 0.98
   2 ?   -3.5   0.0       3.2   1.2e+04      52      67 ..     207     223 ..     193     227 .. 0.66

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 6.6e-34
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdDd+ + +ll++lle eg+ ev +a+dg++al+ll+++ +dl+llD++mp+ +G+++lke+r++  ++pvi+lta+++e d+v +l++gadd+
    EHT98915.1   4 ILLVDDDRELTSLLKELLEMEGF-EVVVASDGEQALNLLDNS-IDLLLLDVMMPKKNGIDTLKELRQQY-QTPVIMLTARGSELDRVLGLELGADDY 97 
                   89*********************.9**************998.************************88.*************************** PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l Kpf+ +eL+++++
    EHT98915.1  98 LPKPFNDRELVARIR 112
                   ***********9985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
                   SCSS.SEHHHHHHHHHH CS
  Response_reg  52 nmpg.mdGlellkeire 67 
                   ++p+  dG+  +k++r 
    EHT98915.1 207 KLPErRDGHPWFKTLRG 223
                   46765788888888876 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   6.8e+03      50      60 ..     108     118 ..     106     130 .. 0.68
   2 !   74.0   0.1   2.1e-24   7.6e-21       2      77 .]     153     228 ..     152     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
                  HHHHHHHHHTT CS
  Trans_reg_C  50 isrLRkkLedd 60 
                  ++r+R  L+ +
   EHT98915.1 108 VARIRAILRRS 118
                  67778777764 PP

  == domain 2  score: 74.0 bits;  conditional E-value: 2.1e-24
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  e+++lt +ef lL lL+++ g+vvsre+L +ev g++  + dr++d+his+LR+kL ++ + + + +t+rg+GY +
   EHT98915.1 153 ETLDLTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLM 228
                  6799******************************************************977779**********85 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.2e-06    0.0079       1      87 [.       3      87 ..       3     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs.sleealealaekdphlPvlllgesdeaeelanv 87
                kiL++ddd e    l+ +Le  g ev++ s+ e + +l ++s ++l++     + +  ++l++l +++ + Pv++l+ ++++  l+ v
  EHT98915.1  3 KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLDNSIDLLLLDVMMPKkNGIDTLKELRQQY-QTPVIMLTARGSE--LDRV 87
                7*********************************9999999999999988888867788888888776.5799999998887..4444 PP

>> DUF2325  Uncharacterized protein conserved in bacteria (DUF2325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.4e-05      0.19       3      90 ..       5      87 ..       3      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
     DUF2325  3 livGGddrmeeqyrklleklggklkvfdgrkekkkkkleskigkaDlvvlftdtvsHkavkkvkkeakkkgkpvvrlhsssvsaleka 90
                l+v  d+++ + +++lle  g+++ v + +++ + + l++ i   Dl++l + + + + ++++k++ +++++pv++l  ++ + l ++
  EHT98915.1  5 LLVDDDRELTSLLKELLEMEGFEVVVASDGEQ-ALNLLDNSI---DLLLLDVMMPKKNGIDTLKELRQQYQTPVIMLTARGSE-LDRV 87
                55556778889999*********999999999.555888888...********************************776654.6666 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.45       7      60 ..       3      57 ..       1      77 [. 0.76
   2 ?   -3.2   0.0       2.6   9.4e+03      71      91 ..     174     194 ..     168     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
      BRCT_3  7 killvseqkefeelWseilklaGaavvkkekseaee.islgkldvvvtdsscpee 60
                killv +++e+++l +e+l++ G +vv +   e+   +  +++d+++ d  +p++
  EHT98915.1  3 KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALnLLDNSIDLLLLDVMMPKK 57
                79************************77766555445667777888888777764 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.6
      BRCT_3  71 pvvSteWviQsLIegevlkyd 91 
                 +vvS e + Q ++ +++ ++d
  EHT98915.1 174 QVVSREHLSQEVLGKRLTPFD 194
                 578888887777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1715.71
//
Query:       EHT98916.1  [L=169]
Description: P pilus assembly/Cpx signaling pathway periplasmic inhibitor/zinc resistance-associated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-17   63.8  14.2    2.1e-17   63.8  14.2    1.5  2  LTXXQ           LTXXQ motif family protein
    2.6e-06   27.6  15.2    0.00051   20.2   8.9    2.2  2  Metal_resist    Heavy-metal resistance
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.033   14.1   0.0    1.5  1  NTPase_1        NTPase
      0.056   13.9   0.2         13    6.3   0.2    2.5  2  KIF1B           Kinesin protein 1B
      0.068   13.0   1.4      0.077   12.8   0.3    1.7  2  Sa_NUDIX        SMODS-associated NUDIX domain
      0.075   13.5  12.4       0.69   10.4   4.0    2.2  2  DUF3106         Protein of unknown function (DUF3106)
       0.41   11.0   8.0        0.1   13.0   3.4    1.8  2  DUF4200         Domain of unknown function (DUF4200)
       0.43   10.5   4.7       0.78    9.6   4.7    1.5  1  CSRNP_N         Cysteine/serine-rich nuclear protein N-termin
          2    9.0   5.9       0.62   10.7   1.6    2.2  2  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext
        3.1    7.7   6.7          6    6.8   0.3    3.1  3  XET_C           Xyloglucan endo-transglycosylase (XET) C-term
        7.1    6.7   9.2         26    4.9   2.8    2.8  2  DUF2680         Protein of unknown function (DUF2680)


Domain annotation for each model (and alignments):
>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8  14.2   1.3e-20   2.1e-17       3     103 ..      43     139 ..      41     140 .. 0.96
   2 ?   -3.3   0.0       9.1   1.5e+04      63      71 ..     143     151 ..     141     158 .. 0.50

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.3e-20
                 .XXXXSTTTT----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHHTSSS--HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
       LTXXQ   3 egriaklkaeLkLtdaQkaalkalaeaaraeakplkakkeemramrkkvlaanfdetaperlarmeamlearleavkkraealkqfyavLtpEQkakld 101
                 +  ++++++ ++Lt++Q++++++l+++ar+++ ++  +  + +am++ v+a++f e+a++  a  ea ++ ++e+++++a  ++q+y +LtpEQ+a+l+
  EHT98916.1  43 QNSQSHMFDVIELTEHQRQQMRDLMQQARHDRPAT--NIDDIAAMHDLVTADKFNEAAIRDKA--EALAKVQVEQQVEMARVRNQMYHLLTPEQQAALQ 137
                 67899******************************..999***********************..********************************99 PP

                 HH CS
       LTXXQ 102 al 103
                 ++
  EHT98916.1 138 KN 139
                 85 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.1
                 HHH..HHHH CS
       LTXXQ  63 rlarmeaml 71 
                 rl +m++  
  EHT98916.1 143 RLNAMRKLS 151
                 444444444 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   8.9   3.1e-07   0.00051      22     110 ..      32     119 ..       6     123 .. 0.83
   2 !   11.1   0.7   0.00021      0.34      37      65 ..     122     150 ..     119     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.1e-07
                   XXXXXTTHHBH...HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  22 ggpppggparg..raellraalgLpaeqraelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraqiee 110
                   ++++   ++++   + +++ + +L++ qr+++r ++++++ ++ a+     +  +++++l +a++f++aai++ ++++++ q++++ ++++
    EHT98916.1  32 HHGGFTTGSMTqnSQSHMFDVIELTEHQRQQMRDLMQQARHDRPATNI---DDIAAMHDLVTADKFNEAAIRDKAEALAKVQVEQQVEMAR 119
                   344444444447779999999*******************77777766...9*********************************999887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00021
                   HHHHS-TTHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  37 lraalgLpaeqraelraalrdharelral 65 
                   ++++  L++eq+a+l++ + ++ +++r+l
    EHT98916.1 122 NQMYHLLTPEQQAALQKNYEQRLNAMRKL 150
                   789999*********************97 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-05     0.033      21      83 ..      24      84 ..      18     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                HHH...GGGEEEEEEEEE-------EEEEEET.T--EEEEEETT---SSEETTEEE-HHHHHH CS
    NTPase_1 21 ellkssgvkvgGfyteevreggrrigFkivdlasgeegiLarveakreprvgkyvvdvesfee 83
                e ++ ++v+ gGf t  ++++ +   F++++l++ +++++      +++r+++   +++++  
  EHT98916.1 24 ESMALDEVHHGGFTTGSMTQNSQSHMFDVIELTEHQRQQMRDL--MQQARHDRPATNIDDIAA 84
                5566678999**********************55555555444..699999999999988765 PP

>> KIF1B  Kinesin protein 1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0079        13       6      39 ..      61      96 ..      57      98 .. 0.69
   2 ?    5.1   0.0     0.019        32       2      12 ..     141     151 ..     141     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0079
       KIF1B  6 vdMRemYeeskegesrsh.svdt.seslsgsDPFyE 39
                ++MR++ ++  +  + ++ +  + +++l   D F E
  EHT98916.1 61 QQMRDLMQQARHDRPATNiDDIAaMHDLVTADKFNE 96
                79*******996665444444436777777788877 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.019
       KIF1B   2 enRlvdMRemY 12 
                 e+Rl+ MR ++
  EHT98916.1 141 EQRLNAMRKLS 151
                 8*******987 PP

>> Sa_NUDIX  SMODS-associated NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   4.7e-05     0.077     125     193 ..      34     101 ..       9     107 .. 0.76
   2 ?    0.1   0.1      0.36   5.9e+02     116     164 ..      98     144 ..      84     154 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.7e-05
    Sa_NUDIX 125 teieysevfkakellladivelllteeqeeeLrkllkkeaadyiladeeeIkrlgevietkk.qkkkIae 193
                  ++++ ++ +  +  ++d++el  te+q++++r+l+++ ++d    + ++I ++ + + ++k +++ I +
  EHT98916.1  34 GGFTTGSMTQNSQSHMFDVIEL--TEHQRQQMRDLMQQARHDRPATNIDDIAAMHDLVTADKfNEAAIRD 101
                 567778888999999****998..67888899*********99999999999987554444314555655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.36
    Sa_NUDIX 116 kykyvkrvvteieysevfkakellladivelllteeqeeeLrkllkkea 164
                 +++   +   ++++++ +++  ++    +  llt+eq+++L+k ++++ 
  EHT98916.1  98 AIRDKAEALAKVQVEQQVEMARVRN-QMYH-LLTPEQQAALQKNYEQRL 144
                 4444444444455444444444432.2333.467778888888777765 PP

>> DUF3106  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.3    0.0019       3.1      46      75 ..      43      72 ..      37      87 .. 0.86
   2 ?   10.4   4.0   0.00042      0.69      32      72 ..     101     142 ..      82     161 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
     DUF3106 46 krlqermeewakLspeqreqarenyqklkq 75
                ++ q++m +  +L+++qr+q+r+ +q++++
  EHT98916.1 43 QNSQSHMFDVIELTEHQRQQMRDLMQQARH 72
                56688899999**************99884 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00042
     DUF3106  32 eiaerykkltpeeqkrl.qermeewakLspeqreqarenyqk 72 
                 + ae  +k++ e+q ++ + r + ++ L+peq++++++ny++
  EHT98916.1 101 DKAEALAKVQVEQQVEMaRVRNQMYHLLTPEQQAALQKNYEQ 142
                 333333444444443321233333444444444444444433 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.4   6.3e-05       0.1       5      75 ..      46     116 ..      43     127 .. 0.93
   2 ?   -0.1   0.2       0.7   1.1e+03      53      68 ..     135     150 ..     131     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.3e-05
     DUF4200   5 kremfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklk 75 
                 +  mf+v e  e+++++++ l++++++ + +++  +     dl+  dkf +   + +a+al k++ e++  
  EHT98916.1  46 QSHMFDVIELTEHQRQQMRDLMQQARHDRPATNIDDIAAMHDLVTADKFNEAAIRDKAEALAKVQVEQQVE 116
                 6689************************************************************9998765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.7
     DUF4200  53 flkendakraralkka 68 
                  l++n ++r +a++k 
  EHT98916.1 135 ALQKNYEQRLNAMRKL 150
                 6788888888888875 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.7   0.00048      0.78      28     103 ..      33     108 ..      31     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00048
     CSRNP_N  28 qGGstLGmakkhsslkkftlaehaieqkrlrreklrerlkeeklealklklsssdlleeeeeealevddisdedld 103
                 +GG t G  ++ s+++ f + e +++q+++ r+ ++++++++ +++++    ++dl++  + +++ + d  +  ++
  EHT98916.1  33 HGGFTTGSMTQNSQSHMFDVIELTEHQRQQMRDLMQQARHDRPATNIDDIAAMHDLVTADKFNEAAIRDKAEALAK 108
                 79************************************99999999888888777777776666666555444333 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.2   1.9e+03       5      20 ..      53      68 ..      49      74 .. 0.58
   2 ?   10.7   1.6   0.00038      0.62       8      46 ..     109     145 ..     103     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
  Arg_decarbox_C  5 LryVqYdpeeLlerlr 20
                     +  +++ +++++ ++
      EHT98916.1 53 IELTEHQRQQMRDLMQ 68
                    5555555555555544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00038
  Arg_decarbox_C   8 VqYdpeeLlerlrrqveaagrLtpeerqalleeleagLk 46 
                     Vq + +  + r+r q+ +   Ltpe+++al +++e+ L+
      EHT98916.1 109 VQVEQQVEMARVRNQMYH--LLTPEQQAALQKNYEQRLN 145
                     555555556666666666..8**************9997 PP

>> XET_C  Xyloglucan endo-transglycosylase (XET) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3    0.0037         6       3      22 ..      45      65 ..      43      72 .. 0.75
   2 ?    1.7   0.2      0.14   2.3e+02      11      26 ..     108     123 ..     100     127 .. 0.81
   3 ?    1.8   0.2      0.13   2.2e+02      11      22 ..     127     138 ..     120     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0037
       XET_C  3 ssswwanq.eLdpkqrralrw 22
                s+s +++  eL+ +qr+++r 
  EHT98916.1 45 SQSHMFDViELTEHQRQQMRD 65
                455555855**********97 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.14
       XET_C  11 eLdpkqrralrwvrkn 26 
                 +   +q+ ++++vr++
  EHT98916.1 108 KVQVEQQVEMARVRNQ 123
                 567899*******985 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.13
       XET_C  11 eLdpkqrralrw 22 
                  L+p+q++al++
  EHT98916.1 127 LLTPEQQAALQK 138
                 58*******986 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5      0.02        32       1      16 [.      55      70 ..      55      74 .. 0.92
   2 ?    4.9   2.8     0.016        26      12      54 ..     106     149 ..     101     153 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
     DUF2680  1 LTdeQkkeleaLyqqi 16
                LT+ Q +++ +L qq 
  EHT98916.1 55 LTEHQRQQMRDLMQQA 70
                8*************96 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.016
     DUF2680  12 LyqqiaelrKqivdKyVe.aGllTkeqgekikkniDkrlkylke 54 
                 L +  +e + ++  ++ + + llT+eq  +  kn ++rl+ +++
  EHT98916.1 106 LAKVQVEQQVEMARVRNQmYHLLTPEQQAALQKNYEQRLNAMRK 149
                 55555566666666665523567888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1408  (0.078532); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1339.29
//
Query:       EHT98917.1  [L=54]
Description: stress-induced protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-15   55.2  15.8      1e-07   32.0   4.2    2.2  2  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   4.2   5.6e-12     1e-07       1      21 []      10      30 ..      10      30 .. 0.98
   2 !   29.3   3.8   3.9e-11   6.9e-07       1      18 [.      36      53 ..      36      54 .] 0.97

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 5.6e-12
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nFA +p+ka+E+G+KGG++S+
  EHT98917.1 10 NFADNPQKASEAGKKGGKSSG 30
                9*******************8 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 3.9e-11
         KGG  1 nFAnDpEkarEIGrKGGq 18
                nF+n+pEka+E+G+KGG+
  EHT98917.1 36 NFKNNPEKASEAGKKGGK 53
                9****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                       69  (0.00384851); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 470.62
//
Query:       EHT98918.1  [L=300]
Description: zinc transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-42  143.7  17.4      7e-42  143.4  17.4    1.1  1  Cation_efflux  Cation efflux family
    6.4e-27   93.5   0.1    9.8e-27   92.9   0.1    1.3  1  ZT_dimer       Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
       0.02   14.8   0.3       0.02   14.8   0.3    1.9  2  DUF4271        Domain of unknown function (DUF4271)
       0.22   10.8   0.1        0.3   10.3   0.1    1.3  1  KAP_NTPase     KAP family P-loop domain


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4  17.4   1.6e-45     7e-42       2     199 .]      14     206 ..      13     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 1.6e-45
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikeg 97 
                    i+++l++++l++++++++++t+S++lla  + sl+d++++l  ll++++s +p+d++++fG+g++e+l+al +++++ g a+fl+l++iq+l  ++
     EHT98918.1  14 IAATLLATTLLIIKIFAWWYTGSVSLLAAMVDSLVDIAASLTNLLVVRYSLQPADADHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLA-SP 108
                    78999****************************************************************************************.** PP

  Cation_efflux  98 ereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllke 193
                     ++  +g+ ++v++++l+ +l+l+ + r + rk+rs+a++a++lh  +D++++ ++lv+++++ ++  +    aD++++l ig++il+sal++  e
     EHT98918.1 109 NELRSPGMGIIVTVLALISTLLLVAFQRWVVRKTRSQAIRADMLHYQSDVFMNGAILVALVLTSYG-FAR---ADALFALGIGVYILVSALRMGYE 200
                    *****************************************************************9.665...*********************** PP

  Cation_efflux 194 slseLl 199
                    ++++Ll
     EHT98918.1 201 AVQSLL 206
                    ***997 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.1   2.2e-30   9.8e-27       1      79 []     210     287 ..     210     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 2.2e-30
                 ....HHHHHHHHHTT-SS-EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEEE. CS
    ZT_dimer   1 ldeeeeeeireiiksvpgvkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHvePe 79 
                 l++ee++ i +i ++ pgv+gvhd+rtr+sG++ f++lh+e++++l++ +aH+iad+vek+++e+fpg +dv+iH +P+
  EHT98918.1 210 LPDEERQHIIAISSNWPGVQGVHDVRTRQSGPTKFIQLHVELEDQLPLVQAHRIADQVEKALREAFPG-SDVIIHQDPC 287
                 6899****************************************************************.8********7 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4     0.082   3.7e+02      90     130 ..      15      55 ..       3      67 .. 0.59
   2 ?   14.8   0.3   4.4e-06      0.02      53     175 ..      82     202 ..      70     208 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.082
     DUF4271  90 iiflilllylllKlllykllgwlFfdkkkirqwifsylsyl 130
                   +l+ + +l++K+++ + +g++  +   +++ + +  s+ 
  EHT98918.1  15 AATLLATTLLIIKIFAWWYTGSVSLLAAMVDSLVDIAASLT 55 
                 34555555556666666666666555555555555555555 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.4e-06
     DUF4271  53 flllltclllglllylllsefgslfgsylassllllliiflilllylllKlllykllgwlF...fdkkkirqwifsylsylsllglllfplvlllvyfp 148
                   l+++ ++ g +l+l+l   + l +    ++l + +  +++++l l+  lll+++  w+     ++ +   ++ + + +++    +++++++l  y  
  EHT98918.1  82 AALAQSMFISGSALFLFLTGIQHLASP---NELRSPGMGIIVTVLALISTLLLVAFQRWVVrktRSQAIRADMLHYQSDVFMNG--AILVALVLTSYGF 175
                 567788888889999999987888777...555555555555555555555555555555510055555555555444444443..5788999999*** PP

     DUF4271 149 lssqillililiillliklllllyksi 175
                   ++ l+ l++ +++l+ +l++ y  +
  EHT98918.1 176 ARADALFALGIGVYILVSALRMGYEAV 202
                 *******************99877765 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.8e-05       0.3      52     131 ..      22     101 ..      12     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.8e-05
  KAP_NTPase  52 rflfaefnawsfkggddavaellaaLadaleeeygqlatkllrakk.lkalkikgkiklrkacaiplvlilevalfllieg 131
                 ++l++++ aw+++g+ +++a+++++L+d + +    l ++  ++ +    ++ +gk+    a ++ +  i   alfl+++g
  EHT98918.1  22 TLLIIKIFAWWYTGSVSLLAAMVDSLVDIAASLTNLLVVRYSLQPAdADHTFGHGKAE-SLAALAQSMFISGSALFLFLTG 101
                 6799************************999888888777777755233344445555.4444444455555666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 2715.24
//
Query:       EHT98919.1  [L=320]
Description: 6-phosphofructokinase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-108  362.2   0.5   2.2e-108  361.9   0.5    1.1  1  PFK         Phosphofructokinase
     0.0022   17.3   0.1     0.0032   16.7   0.1    1.2  1  NAD_kinase  ATP-NAD kinase
  ------ inclusion threshold ------
       0.15   12.5   0.2        1.1    9.6   0.0    2.2  2  FlgM        Anti-sigma-28 factor, FlgM


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.9   0.5  3.6e-112  2.2e-108       1     283 [.       4     275 ..       4     276 .. 0.98

  Alignments for each domain:
  == domain 1  score: 361.9 bits;  conditional E-value: 3.6e-112
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGlieeeiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvviG 99 
                 +i++ltsGGdapGmNaair+vvr+a+++glev+gi++G++Gl+e+++ +l++ +vs+++++gGt+LgsaR +ef+++++r+ a+enlkk+gidaLvviG
  EHT98919.1   4 KIGVLTSGGDAPGMNAAIRGVVRSALSEGLEVFGIYDGYQGLYEDRMINLDRYSVSDMINRGGTFLGSARFPEFRNDDVRQVAIENLKKRGIDALVVIG 102
                 7**************************************************************************99********************** PP

                 SHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-THHHHHHHHHHT-SEEE-TTS CS
         PFK 100 GdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGwlAlmaglaggadvilipEe 198
                 Gdgs+ ga++l+e   g    ++++g+P+TidND++gtdytiG+ TAl+t+veaid+l++t++sh+r+ +vEvmGr+cG l+l+a++agg ++i++pE+
  EHT98919.1 103 GDGSYMGAKRLTEM--G----FPCIGLPGTIDNDVAGTDYTIGYFTALETVVEAIDRLRDTSSSHQRISIVEVMGRYCGDLTLAAAIAGGCEFIVLPEI 195
                 ************66..8....****************************************************************************** PP

                 ---HHHHHHHHHHHHT.T-S-EEEEEESSS..S-...HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHHHHHHHHHHHHH CS
         PFK 199 pfdieeliekikklrkkgkkksiivvaEgakdkegiiaeelakeieektgievrvtvlGhlqrGgspsafDrilatrlGikavel 283
                 p++ eel+++ik   +kgkk++i+++ E+++d      ++la+ ie +t+ e+r+tvlGh+qrGg+p+a+Drila+r+G+  +el
  EHT98919.1 196 PYTREELVAEIKAGIAKGKKHAIVAITEHICD-----IDDLARFIETETKRETRATVLGHIQRGGAPCAYDRILASRMGAYSIEL 275
                 ***************99**************9.....9*******999********************************99987 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.3e-07    0.0032      68     109 ..      84     124 ..      58     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.3e-07
                 ECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEE CS
  NAD_kinase  68 rkaleafadagvdliivvGGDGTaldvarllqkaeiPvlgvn 109
                   a+e++ ++g+d+++v+GGDG    + rl++    P +g++
  EHT98919.1  84 QVAIENLKKRGIDALVVIGGDGSYMGAKRLTEM-GFPCIGLP 124
                 457889999*********************995.99999998 PP

>> FlgM  Anti-sigma-28 factor, FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.21   1.3e+03      23      35 ..      80      92 ..      71      93 .. 0.78
   2 ?    9.6   0.0   0.00019       1.1      23      40 ..     196     213 ..     189     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
        FlgM 23 pevreekVaelKe 35
                 +vr+  ++ lK+
  EHT98919.1 80 DDVRQVAIENLKK 92
                3699999999997 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00019
        FlgM  23 pevreekVaelKeaIasG 40 
                 p  ree Vae+K+ Ia G
  EHT98919.1 196 PYTREELVAEIKAGIAKG 213
                 457*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2679.77
//
Query:       EHT98920.1  [L=329]
Description: periplasmic substrate-binding component of an ABC superfamily sulfate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-44  152.5   0.1    1.7e-44  152.3   0.1    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    5.9e-16   59.3   4.8    6.3e-16   59.2   2.6    1.8  2  SBP_bac_1   Bacterial extracellular solute-binding protein
    5.1e-10   39.2   0.2    7.4e-10   38.6   0.2    1.2  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    3.3e-06   27.1   0.8    5.3e-06   26.5   0.8    1.4  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    5.7e-05   22.3   0.0    0.00011   21.4   0.0    1.4  1  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.1   4.7e-48   1.7e-44       7     230 .]      30     280 ..      24     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 4.7e-48
                 SSTHHHHHHHHHHHHHHH-......--EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGG......GG-EEEEEEEEEEEESTT-TT-- CS
  SBP_bac_11   7 gslaaalrelaaaFeahtg......vkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqa......esavplassplviavpkgnpkki 93 
                   +++ +++ ++aF+ah++      v ++ s+ggsgk+a ++++g r+Dv+ +a +  ++++a++g++++      +++++ ++s++v++v+kgnpk+i
  EHT98920.1  30 DPTRELYEQYNKAFSAHYKqetgdnVVIRQSHGGSGKQATSVINGIRADVVTLALQSDVDAIADRGRIDKdwikrlPDNSAPYTSTIVFLVRKGNPKGI 128
                 4457888888888888766666799999************************************************99999****************** PP

                 -SHHHHHHSS--EEEE--T-TTTTH....H.H.HHHG..GG--.....HHHHHHHHHTEEEEESSHHHHHHH.HHTTT-SEEEEEHHHHH....H.STT CS
  SBP_bac_11  94 kgwadLlkpglklavadPttspsGl....aal.alle..aaga.....qellkalekkvvklgessrqllta.veageadagivyeseakaa..e.ngd 176
                 ++w dL+kpg+++++++P+ts++++    aa+  +l+  +  +     q+++k l+k+v ++  ++r ++++ ve+g  d++i++e+ea++a  +  +d
  EHT98920.1 129 HDWSDLIKPGVSVITPNPKTSGGARwnylAAWgWALDhnN--GdqakaQRYVKDLFKHVEVQDSGARGATNTfVERGIGDVLIAWENEAYLAvnKlGKD 225
                 *************************977744414444440..2456669***********9999987665555****************7777655899 PP

                 SSEEEE--TTT--....EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 177 kleavylpeglnl.dpldypaavlkkaakreaAraFlafLrspeaqailrkyGfr 230
                 k+e+v+++e++++ +++ ++  v++  + r+ A+a+l++L+s e+q+i++++ +r
  EHT98920.1 226 KFEIVTPSESILAePTVSVVDKVVDEKGTRQVAEAYLKYLYSTEGQTIVAENYYR 280
                 ****************************************************998 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   2.6   1.7e-19   6.3e-16       4     314 ..      32     271 ..      29     272 .. 0.85
   2 ?   -0.2   0.0      0.21   7.4e+02      40      77 ..     285     323 ..     276     325 .. 0.78

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 1.7e-19
                 HHH.HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHH CS
   SBP_bac_1   4 lte.gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpki 101
                 ++e ++ +++++ + +++ ++g +V+i ++ +gs++q  ++ + +G  + Dv++            +l  ++d++++   +++++   ++++s      
  EHT98920.1  32 TRElYEQYNKAFSAHYKQ-ETGDNVVIRQSHGGSGKQ--ATSVINGIRA-DVVTL-----------ALQSDVDAIADRGRIDKDWIKRLPDNS------ 109
                 667788999999777877.9*****************..********77.*****...........9*************9999999999888...... PP

                 HCEEEESEEEEEEEEEEE...ETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHH CS
   SBP_bac_1 102 ldskvlyvPlyaargliY...NkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaa 197
                         P+ ++ ++ +   N++  +         W++l+++++ ++ +++k++ggar+ + + ++++++                            
  EHT98920.1 110 -------APYTSTIVFLVrkgNPKGIH--------DWSDLIKPGVSVITPNPKTSGGARWNYLAAWGWALD---------------------------H 166
                 .......56666788888667777777........9******************77777777777777774...........................4 PP

                 HHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH.TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEE.EEEBTT CS
   SBP_bac_1 198 tylvklyavanltkelkgkgaenkdgaaalalfe.aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayg.laipkg 294
                 + +  ++a++++++  k + +++++ + a++ f  +G  +++i++ ++a+ a ++ +k +f++ +++  +                   a + + ++ +
  EHT98920.1 167 NNGDQAKAQRYVKDLFKHVEVQDSGARGATNTFVeRGIGDVLIAWENEAYLAVNKLGKDKFEIVTPSESI------------------LAEPtVSVVDK 247
                 45555555666666669999999999999999888*************9999999999999999999988..................88888999999 PP

                 CSTHHH....HHHHHHHHTSHHHH CS
   SBP_bac_1 295 sknpea....AkkFldfllspeaq 314
                   ++++    A+++l++l+s e+q
  EHT98920.1 248 VVDEKGtrqvAEAYLKYLYSTEGQ 271
                 9999999999************99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
                 HHHHHHHTTSSSCSEEEECGGHHHHHHHT..TSBECCHHH CS
   SBP_bac_1  40 kltlaiaaGdgpaDviavdndwiarlaka..glllpldpy 77 
                 ++++ +a++ +p  ++++ +d+++ +aka    +++ ++y
  EHT98920.1 285 EVAKKFASTFAPVKLFTI-DDKFGGWAKAqkTHFADGGTY 323
                 567789999999999999.888888888866766666665 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.2   2.1e-13   7.4e-10      57     226 ..     114     288 ..      87     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.1e-13
   SBP_bac_6  57 gplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnng...sdlfealllalyk..dfg.edgvkkllrnlkanlhpaq.mvkaagslesgepavsv 148
                 +++v++v k   kg     +W+DL++P    +v  p++++     ++++++  ++   ++g ++++++++++l++ +     + + a++   +++  +v
  EHT98920.1 114 STIVFLVRKGNPKGI---HDWSDLIKPGV--SVITPNPKTsggARWNYLAAWGWALdhNNGdQAKAQRYVKDLFKHVEVQDsGARGATNTFVERGIGDV 207
                 566777777776666...89*******87..9999999999997788877777777778888**********999776555788888888888877777 PP

   SBP_bac_6 149 vpyffadilpekkkgk..nlkvvwPedGalvspifmlvkkg....kkkelakafidfllspevqailakaggvfPvvtnpavln 226
                 ++++ + ++ + +k +  ++++v+P +  l+ p++ +v k      ++  a+a++ +l+s e+q+i+a++++  P +   +v++
  EHT98920.1 208 LIAWENEAYLAVNKLGkdKFEIVTPSESILAEPTVSVVDKVvdekGTRQVAEAYLKYLYSTEGQTIVAENYY-RPRN--EEVAK 288
                 777777777777665557*********************99998889999*********************8.8854..44444 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.8   1.5e-09   5.3e-06      86     269 ..     109     287 ..      26     296 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.5e-09
                 --EEEEEEE-EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-.SEGG---.GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S....- CS
   SBP_bac_8  86 gvPyasetpyvliynkdllekaedpktwdellaaakklkgkf.glpdpas.gwlqaallakdgksldddggkdglkealellkklkdngktydtg..ad 180
                 + Py+ +t  v+ ++k   +    + +w++l +     +g   ++p+p + g +++  la++g+ ld +  + ++++a +++k+l +++ + d+g   +
  EHT98920.1 109 SAPYT-ST-IVFLVRKGNPK---GIHDWSDLIK-----PGVSvITPNPKTsGGARWNYLAAWGWALDHN--NGDQAKAQRYVKDLFKHVEVQDSGarGA 195
                 57777.55.79999988855...8999999999.....55552558887537889987776*****999..8889**********99998775552268 PP

                 -SSTTTTTSBSEEEE-TTHHHHHH-T.TT.SEEEE--S--EEEEEEEEEEBTTS-HHHH..HHHHHHHHHTTSHHHHHHHHHH---BS-S-TT CS
   SBP_bac_8 181 avsefanGevaftingswdiaaaqka.gk.klgaivpkqgsfaggkglavpknaknedl..aAldFlkwltspenqaalaektgyipvnksaa 269
                 ++  +  G     i+++ ++  a ++ gk k++++ p ++ +a  +  +v k  +++     A + lk+l+s e+q+  ae   y p n ++a
  EHT98920.1 196 TNTFVERGIGDVLIAWENEAYLAVNKlGKdKFEIVTPSESILAEPTVSVVDKVVDEKGTrqVAEAYLKYLYSTEGQTIVAE-NYYRPRNEEVA 287
                 8889999999999999999887775548559**************99999666555533347***************9999.33466666555 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     3e-08   0.00011      72     181 ..     117     237 ..     110     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3e-08
                 CCCCHCCHHHS--BGGGC-S-B-EEEEE-..TTSHHH.HHHHHH...HC-CEECTE-SSTTSEEESSHHHH.........HCCHCCETTCCECCCGG-H CS
    PBP_like  72 glvvakgnpkkitnwkdladaplrlvnRe..tGSGtr.dlfdel...lkkegiskssikgyaqearshlav.........aaaVaagradvgvgieava 155
                  ++v+kgnpk+i++w+dl ++++ +++++  t+ G+r  ++  +   l  ++ ++++ + y +  ++h++v          + V++g +dv ++ e+ a
  EHT98920.1 117 VFLVRKGNPKGIHDWSDLIKPGVSVITPNpkTSGGARwNYLAAWgwaLDHNNGDQAKAQRYVKDLFKHVEVqdsgargatNTFVERGIGDVLIAWENEA 215
                 589********************99965521677887546655422267779999***********************9999************99999 PP

                 CCCCCCECTTCE-EEEEEEEECTCCC CS
    PBP_like 156 eelkgldfvplaeerydlvvrkeald 181
                      l  ++l + ++++v++ e   
  EHT98920.1 216 --Y--LAVNKLGKDKFEIVTPSESIL 237
                 ..3..799999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2801.92
//
Query:       EHT98921.1  [L=255]
Description: triosephosphate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-94  315.3   0.2    2.7e-94  315.1   0.2    1.0  1  TIM       Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.1   0.2   1.5e-98   2.7e-94       2     243 .]       5     246 ..       4     246 .. 0.99

  Alignments for each domain:
  == domain 1  score: 315.1 bits;  conditional E-value: 1.5e-98
                 EEEEE-TBTS-HHHHHHHHHHHHHHCHG.CTSEEEEE--GGGHHHHHHHHTTSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHHST CS
         TIM   2 liagNwKmnktleeakellkklkaklke.ekvevviappflylekvkklleesklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrqlfk 99 
                 l++gNwK+n++++++ el++ l+++l+  e + v+iapp+lyl+++k+++++s++ lgaqnv+ + sGafTGe+saemlkd+g+ky+iiGHsErr+++k
  EHT98921.1   5 LVMGNWKLNGSKHMTAELIDGLRKELSGvEGCGVAIAPPALYLDQAKHAVSGSHIALGAQNVDVNLSGAFTGEISAEMLKDIGAKYIIIGHSERRTYHK 103
                 79*******************9999998899******************************************************************** PP

                 --HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTHHH CS
         TIM 100 EtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvskev 198
                 E+de++akK++ ++++gl p+lC+GEt++e+eagkteev+++ql+++l++ ++ea+k+ viAYePvWAiGtgk+atp qaq+vh++ir+ +a+k ++ v
  EHT98921.1 104 ESDEFIAKKFAVLKAAGLVPVLCIGETEAENEAGKTEEVCARQLDAVLTTQGAEAFKDAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKK-DAAV 201
                 *********************************************************************************************9.9*** PP

                 HTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 199 aekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 ae+ +i+YGGsvn++na+el++q+didG+LvGgaslka+ F+ i+
  EHT98921.1 202 AEQAIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIV 246
                 *****************************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1908.82
//
Query:       EHT98922.1  [L=39]
Description: hypothetical protein CKS_1096 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 338.07
//
Query:       EHT98923.1  [L=196]
Description: uncharacterized DUF1454 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-80  266.9   0.0    8.4e-80  266.7   0.0    1.0  1  DUF1454   Protein of unknown function (DUF1454)


Domain annotation for each model (and alignments):
>> DUF1454  Protein of unknown function (DUF1454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   0.0   4.7e-84   8.4e-80       2     189 ..       8     194 ..       7     195 .. 0.99

  Alignments for each domain:
  == domain 1  score: 266.7 bits;  conditional E-value: 4.7e-84
     DUF1454   2 lllalalalplaaaaaepkvteetkeealyLlagaPtFdltisqfRekynkanptlpleEyrvidskddkanltRAAskineklYssavLErgtekiks 100
                 lll++al++p+ aa+ +p  + e+ ++a+yLl+gaPt d+ti qfRekyn anp+lpl+Ey +id++d+k+ ltRAA+kine+lYss++LE gt+kik+
  EHT98923.1   8 LLLSVALTVPVFAADPQPLDKAEHMPTAPYLLPGAPTLDMTIGQFREKYNLANPQLPLREYSAIDTRDEKSDLTRAATKINETLYSSTALEPGTGKIKT 106
                 8999*********************************************************************************************** PP

     DUF1454 101 lqltllpseegpeekearakaleYmaAlirqfePtlskeqsqkkleellskgkkkryysqneGalRyvvadsgekgltFAvEPikLaLs 189
                 lq+t+lp ++gp++ + +akal+Ym+A++r+f P l++e+ +kkle+ll++gk++ryy + eGalR+vv+d+g+kgltFA+EP+kLaL+
  EHT98923.1 107 LQITWLP-IPGPDQSASQAKALDYMTAMLRFFVPGLTQEEGRKKLETLLKAGKGSRYYEHVEGALRFVVSDNGDKGLTFAIEPVKLALA 194
                 *******.*******************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1663.33
//
Query:       EHT98924.1  [L=144]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-17   64.4   5.9    1.5e-17   63.9   5.9    1.2  1  DUF805    Protein of unknown function (DUF805)
  ------ inclusion threshold ------
      0.042   13.5   1.2      0.053   13.2   1.2    1.1  1  DUF4184   Domain of unknown function (DUF4184)
      0.079   13.0   8.1       0.11   12.5   8.1    1.3  1  TspO_MBR  TspO/MBR family
       0.36   10.5  13.7        2.5    7.8  13.7    2.1  1  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   5.9   3.4e-21   1.5e-17       1     105 []       7     133 ..       7     133 .. 0.74

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 3.4e-21
      DUF805   1 yfdfkGRasRsefwwfvlfllllvivlallaavlaaaavasalsvvlallllvpslavtvRRlHDtgrsgwllllllv..................... 78 
                 +f+f+GR++R++fw++  + +ll+ +l++la    +  + ++++ + +++ll p+ a++v+RlHD++r g+++lll+                      
  EHT98924.1   7 FFSFRGRVGRRDFWLWQAIWVLLTSLLFFLAG---NDLLDTQMAAFGIVCLLWPASAIVVKRLHDRDRRGYWALLLIAawllmagnwsmtgevlqwlig 102
                 699*************9999999999888766...45777888888888899999****************9777666555555555544444443333 PP

      DUF805  79 ...plial.llllvllllpgtpgenryGpdp 105
                    p+i+l  l+l l + +gt g+nr+G+ p
  EHT98924.1 103 rvlPFIILaGLILDLGVFRGTVGDNRFGAAP 133
                 3333332213455688888*********976 PP

>> DUF4184  Domain of unknown function (DUF4184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.2   1.2e-05     0.053     126     195 ..      18      94 ..      16     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
     DUF4184 126 dgwfvrlipvlqssvagdvplykllqhgstllGlvviivvlvrllrraksksekeklavlaavivlali.........a 195
                 d w+++ i vl +s+ + ++  +ll+  + ++G+v++++ +   + +    ++++++ ++a ++++a +          
  EHT98924.1  18 DFWLWQAIWVLLTSLLFFLAGNDLLDTQMAAFGIVCLLWPASAIVVKR--LHDRDRRGYWALLLIAAWLlmagnwsmtG 94 
                 6799***********************************999988875..78999999999999988854444443331 PP

>> TspO_MBR  TspO/MBR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   8.1   2.5e-05      0.11      63     127 ..      19      88 ..       1      93 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHTSGGCTTTT.....TSGGGHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHCHHHHHHHHHH CS
    TspO_MBR  63 lyavqlvlnllwsplffgl.....kspvlalvdivallglvvalilafskvdklaallllpyllWllfat 127
                 +++ q +  ll s+lff +        ++a+ ++++l+ ++++++++ +  d+   + ll+ ++Wll+a 
  EHT98924.1  19 FWLWQAIWVLLTSLLFFLAgndllDTQMAAFGIVCLLWPASAIVVKRLHDRDRRGYWALLLIAAWLLMAG 88 
                 678899999999999998855555678889999999*******************************995 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.7   0.00057       2.5      19      92 ..      16     122 ..       7     132 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00057
        Yip1  19 lrapdlallllalltlllgllas..lnlgqtlasg.................................eevqgltlssllgaiiggylglllgllllal 82 
                 +r+++l+ ++++llt ll++la+  l   +t+ ++                                  +  + ++ s+ g ++ +++g +l++++la+
  EHT98924.1  16 RRDFWLWQAIWVLLTSLLFFLAGndL--LDTQMAAfgivcllwpasaivvkrlhdrdrrgywallliaAWLLMAGNWSMTGEVLQWLIGRVLPFIILAG 112
                 678********************543..33333334588888888888887777777777776666665555555666666677777777777777777 PP

        Yip1  83 llhliakllg 92 
                 l+  ++ + g
  EHT98924.1 113 LILDLGVFRG 122
                 7766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1134.88
//
Query:       EHT98925.1  [L=248]
Description: ferredoxin-NADP reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-17   63.9   0.0    2.8e-17   63.3   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.1e-08   35.3   0.0    2.3e-08   34.3   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   3.1e-21   2.8e-17       1     108 [.     111     222 ..     111     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 3.1e-21
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH......HSS CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells......lkk 90 
                    m+a+Gt++ P++s+l++     ++  ++vlv+++r+ +dl +   +++l++ ++g+l++++vvsree+     +gr+ + + +  l+      ++ 
     EHT98925.1 111 MLATGTAVGPYLSILQQGEGL-DRFDNIVLVHAARYAADLSFLPLMQQLQQIYNGKLQIITVVSREESLG-SLTGRIPALIENGKLEqaaglaIDA 204
                    9*****************997.899*************************************88777765.899**999997755556888**99* PP

                    TTEEEEEECSHHHHHHHH CS
  NAD_binding_1  91 eethvyvCGppgMikavr 108
                    e++hv+vCG+p+M+++++
     EHT98925.1 205 ETSHVMVCGNPQMVRDTQ 222
                    ***************997 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.6e-12   2.3e-08      13      90 ..      16      90 ..       6      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.6e-12
                   TEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEE CS
  FAD_binding_6 13 dtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtlei 90
                     + f+++++++ +   + +Gq+  l l+i+ge+v R+Y+ ++++n+   le+   ++p+Gk+s +L+ l++g+++ i
     EHT98925.1 16 TDALFSLRVKAPIA--PFHAGQYAKLALEIEGERVQRAYSYVNAPND-DLLEFYLVTVPDGKLSPHLQALRPGEQVMI 90
                   44556666665555..99**********************9999986.5899**********************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2021.24
//
Query:       EHT98926.1  [L=396]
Description: multidrug efflux system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-34  118.0  52.0    4.4e-34  118.0  52.0    1.7  2  MFS_1     Major Facilitator Superfamily
     0.0011   17.5   6.8     0.0018   16.8   6.8    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.016   15.4   0.4      0.016   15.4   0.4    4.2  6  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0  52.0   7.3e-38   4.4e-34       4     352 ..      16     350 ..      13     351 .. 0.87
   2 ?   -0.8   0.5     0.092   5.5e+02      55      81 ..     353     380 ..     347     392 .. 0.54

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 7.3e-38
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgaga 101
                 ++++  +a +i+ pa+  a+a++l++    ++ ++++y  +++ ++l++G+lsd +Grr+v+l+g+++f +g++++l+ +s+  +l+++ ++qG+g+g+
  EHT98926.1  16 LVAVGQMAQTIYVPAMA-AMADALQVRNGMMQHVMAAYLMTYGGSQLIYGPLSDSVGRRPVILAGMAIFMIGSIIALL-ASSLdMLVIGSAIQGAGTGV 112
                 566778999********.******************************************************666667.77777*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 +  ++ ++ +d++++    +a+++l++g+ ++++++p++g++l++++gW+a+f +l ++++++ v ++++lpe++p ++ ++p  +            +
  EHT98926.1 113 AGVMARTMPRDLYNGHALRQANSWLNMGVLASPLVAPVIGAALTQLFGWHACFAFLLLLCMIVTVTMACWLPETRPVSAEVTPFLK----------RYI 201
                 *****************************************************************99**************98777..........367 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrrrrlllallllllaalglallavt 297
                 ++l+  +++  +l+ l+++  g++ + +   ++l  vl+l+  +++++l+ l+  +    a+++++++ r   +++  +++++ ++llaa+++ + a++
  EHT98926.1 202 RLLRDANFVR-YLVLLIGALSGIAVFEASCGVLLGGVLDLN-SFTVSILFILPIPA----AFFGAWFAGReqRSWHSLMWFGVNSCLLAAVLMWVPAWF 294
                 7888888665.88888888889999999999999*******.34444333333333....55555555555577888*********9999999999999 PP

       MFS_1 298 ssavllllvlvl....iGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                    +++++ l++    + fg+g+ fp++++ a++ +    ag+a +l++ +++lg+ l 
  EHT98926.1 295 --GIMTIWTLLIpaslFFFGAGMLFPLATSGAMEPYA-WLAGSAGALIGGMQNLGSGLV 350
                 ..44444444444443666*****************5.99***************9885 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.092
       MFS_1  55 lsdrfGrrrvlllglllfalglllll.f 81 
                 ls  +  r  + lg+l+f+ +l++ll +
  EHT98926.1 353 LSALMPQRDQFSLGMLMFVTALVMLLcW 380
                 4555544445556666666663333222 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   6.8     3e-07    0.0018      87     216 ..      52     182 ..       8     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-07
       TRI12  87 wttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasp......lfvgelmsnktkflgllivsipvvvts 179
                 + +    s l+ g l+d +grrp++++   + ++g+i+   a+ ++ l+   ++ g  +g ag         l+ g  + +   +l + +++ p v   
  EHT98926.1  52 YLMTYGGSQLIYGPLSDSVGRRPVILAGMAIFMIGSIIALLASSLDMLVIGSAIQGAGTGVAGVMArtmprdLYNGHALRQANSWLNMGVLASPLV--- 147
                 4455556899**********************************************9999999764111133566666666666666666666655... PP

       TRI12 180 glspylgqrlaiqgswrwifyiyiitsaiavllivvw 216
                   +p +g  l+    w   f   +++  i  + +  w
  EHT98926.1 148 --APVIGAALTQLFGWHACFAFLLLLCMIVTVTMACW 182
                 ..56667766666667776666666655555555555 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.3   7.9e+03      25      57 ..      13      25 ..       7      34 .. 0.50
   2 ?   15.4   0.4   2.6e-06     0.016      14      56 ..      73     115 ..      67     123 .. 0.85
   3 ?   -2.6   0.7       1.1   6.7e+03      21      37 ..     166     182 ..     147     191 .. 0.49
   4 ?   -1.3   0.4      0.45   2.7e+03      26      56 ..     255     285 ..     243     293 .. 0.69
   5 ?   -2.6   1.0       1.1   6.6e+03      18      32 ..     283     297 ..     267     318 .. 0.53
   6 ?    0.6   0.1      0.11   6.6e+02      16      34 ..     362     380 ..     349     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
     DUF2530 25 lvalvvllvvgdaleswlpvclaGlvvGllGla 57
                l+alv+                    vG ++ +
  EHT98926.1 13 LIALVA--------------------VGQMAQT 25
                333333....................3333333 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.6e-06
     DUF2530  14 rpvivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGl 56 
                 rpvi++g+++++++ +++l++ +    ++  ++ G+++G+ G+
  EHT98926.1  73 RPVILAGMAIFMIGSIIALLASSLDMLVIGSAIQGAGTGVAGV 115
                 8******************99555555778999*******997 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.1
     DUF2530  21 tllWlvalvvllvvgda 37 
                 + l l+ ++v++++  +
  EHT98926.1 166 AFLLLLCMIVTVTMACW 182
                 33344444444444333 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.45
     DUF2530  26 valvvllvvgdaleswlpvclaGlvvGllGl 56 
                 +a+  ++++g++  sw      G+   ll+ 
  EHT98926.1 255 AAFFGAWFAGREQRSWHSLMWFGVNSCLLAA 285
                 5677778888888888777777776655554 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.1
     DUF2530  18 vvgtllWlvalvvll 32 
                 ++ +l+W+ a   ++
  EHT98926.1 283 LAAVLMWVPAWFGIM 297
                 333344443333333 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.11
     DUF2530  16 vivvgtllWlvalvvllvv 34 
                    +g+l+++ alv+ll+ 
  EHT98926.1 362 QFSLGMLMFVTALVMLLCW 380
                 56789*********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 3088.95
//
Query:       EHT98927.1  [L=336]
Description: fructose 1,6-bisphosphatase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-130  434.5   7.1   1.8e-130  434.3   7.1    1.0  1  FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-enco
  ------ inclusion threshold ------
       0.19   12.2   0.0       0.45   11.0   0.0    1.6  1  YejG         YejG-like protein


Domain annotation for each model (and alignments):
>> FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-encoded
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.3   7.1  2.1e-134  1.8e-130       1     308 []       3     322 ..       3     322 .. 0.99

  Alignments for each domain:
  == domain 1  score: 434.3 bits;  conditional E-value: 2.1e-134
  FBPase_glpX   1 rnlalelvrvteaAAlaaarlvGrgdkeaadqaAveamrkalneleikgevviGegekdeapmLyiGekvGsgegpevdiavdpleGttlvAkglpna 98 
                  r+la+e+ rvteaAAla ++++Grgdk+aad aAv+amr++ln+++i+g++viGege+deapmLyiGekvG+g+g +vdiavdp+eGt+++A+g++na
   EHT98927.1   3 RELAIEFSRVTEAAALAGYKWLGRGDKNAADGAAVHAMRHVLNTIQIDGQIVIGEGEIDEAPMLYIGEKVGTGQGDAVDIAVDPIEGTRMTAMGQANA 100
                  689*********************************************************************************************** PP

  FBPase_glpX  99 isviAvaekgsllkapdvYmeKlvvgpeakgvidldapveenlkavakalgkevedltvvvLdrpRheelieeireagarvklisdGDvaaaiaaale 196
                  ++v+Av++kg++l+apd+YmeKl+vgp+a+g+i+ld+p+e nl+++a a++k++++ltv +L +pRh+++i++++++g+r+ +++dGDvaa+i ++++
   EHT98927.1 101 LAVMAVGDKGTFLHAPDMYMEKLIVGPAARGHINLDQPLELNLRNIAIAMNKPLSELTVSILAKPRHDAVIQQLKALGVRIFAFPDGDVAASILTCMP 198
                  ************************************************************************************************** PP

  FBPase_glpX 197 esgvdvllGiGgapEGvlaAaalkclgGemqarlvpr.............keeereraekmgiedldkvltledLvkgddvifaatgvTdgelLkgvr 281
                  +s+vdv++GiGgapEGv++Aa++++l+G+mq+rl+ r              e e +r++ mgi +  kvl l+ ++++d+v+faatg+T+g+lLkg++
   EHT98927.1 199 DSEVDVMYGIGGAPEGVVSAAVIRALDGDMQGRLLARhhvkgdteenrriGEYELKRCAGMGI-EAGKVLPLQTMARNDNVVFAATGITSGDLLKGIT 295
                  ************************************9***********9999***********.********************************** PP

  FBPase_glpX 282 fkgggarteslvmrsksgtvrfiesih 308
                  ++g+ a+ e+l++r+ks+t+r+i+s+h
   EHT98927.1 296 RQGNMATSETLLIRGKSRTIRRIQSVH 322
                  ************************998 PP

>> YejG  YejG-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05      0.45      30      77 ..      10      59 ..       3      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
        YejG 30 eeaseensliglkLlshdgesawe..vlrelkqsladiqvesaivelege 77
                ++ +e   l g k l + +++a +  +++++++ l+ iq++ +iv  ege
  EHT98927.1 10 SRVTEAAALAGYKWLGRGDKNAADgaAVHAMRHVLNTIQIDGQIVIGEGE 59
                566788899********99999854489****************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2498.77
//
Query:       EHT98928.1  [L=503]
Description: glycerol kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-89  297.7   0.4    9.1e-89  297.2   0.4    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    1.3e-62  211.0   1.5    3.1e-62  209.8   1.1    1.8  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.2   0.4     1e-92   9.1e-89       1     245 []       8     255 ..       8     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 297.2 bits;  conditional E-value: 1e-92
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE-T CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd.kpLynailw 98 
                 +i++lD+Gtts++a+vld+++++va++q+e+++++pk gw+e+dp+ iw+++++++ +vl++a+i +++i+aIgi++qre+++++Dk++ kp+ynai+w
  EHT98928.1   8 YIVALDQGTTSSRAVVLDHDANIVAVSQREFTQIYPKAGWVEHDPMDIWASQSSTLVEVLAHADIRSDEIAAIGITNQRETTIVWDKETgKPVYNAIVW 106
                 89************************************************************************************************* PP

                 T--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT..--EEEHHHHCTTTSEETTTTEE-HH CS
      FGGY_N  99 kdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg..qfvtdvtnasesmlfnikklewdee 191
                 +d+rta  ++klk eg e+++++ tglv+ ++f+++k+kW+++n+++++e+++    +f+++d++L w++t+  ++++d+tnas++mlfni++lewd+ 
  EHT98928.1 107 QDPRTADYCHKLKSEGLEEYIQHTTGLVINPYFSGTKVKWILDNVEGARERAKrgelLFGTVDTWLVWKMTQgrVHISDYTNASRTMLFNIHTLEWDQR 205
                 ************************************************************************9************************** PP

                 HHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 192 llailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 ll++l+ip+e+LP++++sse++g++++  +  +    ++p++g++gDqqaa+ G
  EHT98928.1 206 LLDVLDIPREMLPEVKSSSEVYGQTNIGGKGGT----RIPIAGIAGDQQAALYG 255
                 ****************************99999....9*************976 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.19   1.7e+03      46      66 ..     139     159 ..     121     196 .. 0.66
   2 !  209.8   1.1   3.4e-66   3.1e-62       1     197 [.     264     453 ..     264     454 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.19
      FGGY_C  46 vagslvawlldnl.glreeird 66 
                 + g  v+w+ldn  g+re+ ++
  EHT98928.1 139 FSGTKVKWILDNVeGARER-AK 159
                 5666778888887444333.33 PP

  == domain 2  score: 209.8 bits;  conditional E-value: 3.4e-66
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva.gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsg 97 
                 ak+++GT++f+l+ +gt+ v s+hgllt++a g+ g+ +yaleg+i++ g++++wl+d+ +l   i+da++  e  a      +v d++gv++vpaf+g
  EHT98928.1 264 AKNTYGTGCFMLMnTGTEAVTSTHGLLTTIAcGPRGEVNYALEGAIFIGGAAIQWLRDEMKL---ISDAADS-EYFA-----MKVKDSNGVYMVPAFTG 353
                 79*****************************988899**********************888...9999997.7777.....9**************** PP

      FGGY_C  98 lrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                 l apywdp arg+++gl+++ ++ hi+rA+le++a+q+r++lea+++d +  l++l+vdGG++ n++lmq++ dilg+ Verp+ +e talGaA+lA++
  EHT98928.1 354 LGAPYWDPYARGALFGLTRGANANHIIRATLESIAYQTRDVLEAMQNDANTRLQSLRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL 452
                 **************************************************************************************************9 PP

      FGGY_C 197 a 197
                 a
  EHT98928.1 453 A 453
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3872.03
//
Query:       EHT98929.1  [L=282]
Description: glycerol facilitator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-70  235.0  12.4    1.1e-69  234.6  12.4    1.0  1  MIP            Major intrinsic protein
  ------ inclusion threshold ------
       0.58    9.6   1.6         11    5.5   0.0    2.8  3  Clathrin-link  Clathrin, heavy-chain linker
        0.6   10.3   0.1        0.6   10.3   0.1    2.9  3  DUF2613        Protein of unknown function (DUF2613)


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.6  12.4   1.8e-73   1.1e-69       4     227 .]       5     252 ..       2     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 234.6 bits;  conditional E-value: 1.8e-73
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHH CS
         MIP   4 svkflravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllG 102
                 +++++ +++AEfl+t l++f+g g+++++k + +s++     ++ ++ +++gla+ ++vyl ag+SGaHlNPavT+al+++++++ ++++ Yi +Q++G
  EHT98929.1   5 TTTLKGQCIAEFLGTGLILFFGAGCVAALKLAGASFG-----QW-EICIVWGLAVSMAVYLSAGVSGAHLNPAVTIALCLFANFEGRKVVPYILSQVAG 97 
                 566789*********************9999998854.....45.67788************************************************* PP

                 HHHHHHHHHHHCHHH.................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHH CS
         MIP 103 aivaaallklltkgl.................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgi 184
                 a+++aal+++l+++l                  s ag f+++++p++s+gqa+ vE+++t+vL+ v++altdd + v +g +apl+igllva+i  +++
  EHT98929.1  98 AFCGAALVYGLYYSLfinfeqshnivrgsvesLSLAGIFSTYPNPQISVGQAFLVEMVITAVLMSVIMALTDDGNGVPRGPMAPLLIGLLVAVIGGSMG 196
                 ******************************9999***************************************************************** PP

                 HHHST-SSHHHHHHHHHHHTH.............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 185 pltGaamNpArslgpavvlnk.............fedhwvylvGPliGailgalvY 227
                 pltG+a+NpAr++gp+v+ +              + +++v+++GPl+Ga lga+ Y
  EHT98929.1 197 PLTGFALNPARDFGPKVFEWLagwgsvaftggyqIPYFLVPIFGPLVGACLGAFGY 252
                 *****************************************************987 PP

>> Clathrin-link  Clathrin, heavy-chain linker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       0.5     3e+03      18      22 ..      32      36 ..      32      37 .. 0.89
   2 ?    2.4   0.1     0.017     1e+02      17      23 ..      51      57 ..      50      57 .. 0.89
   3 ?    5.5   0.0    0.0019        11       4      11 ..      87      94 ..      85      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.5
  Clathrin-link 18 ALrlA 22
                   AL+lA
     EHT98929.1 32 ALKLA 36
                   9***9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.017
  Clathrin-link 17 LALrlAs 23
                   LA+++A+
     EHT98929.1 51 LAVSMAV 57
                   9*****7 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0019
  Clathrin-link  4 IIPYIlnt 11
                   ++PYIl++
     EHT98929.1 87 VVPYILSQ 94
                   8*****98 PP

>> DUF2613  Protein of unknown function (DUF2613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5      0.64   3.8e+03      10      25 ..      47      62 ..      45      79 .. 0.68
   2 ?   10.3   0.1    0.0001       0.6       1      24 [.      85     108 ..      85     112 .. 0.93
   3 ?   -3.5   0.5         2   1.2e+04      17      23 ..     185     191 ..     182     195 .. 0.41

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.64
     DUF2613 10 aVaGivlGvvavfgvt 25
                +V G+++ +++ + ++
  EHT98929.1 47 IVWGLAVSMAVYLSAG 62
                6778888777666444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
     DUF2613   1 rflgPaaaSaVaGivlGvvavfgv 24 
                 r ++P + S VaG+  G+++v g+
  EHT98929.1  85 RKVVPYILSQVAGAFCGAALVYGL 108
                 789******************986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2
     DUF2613  17 Gvvavfg 23 
                 G+ ++++
  EHT98929.1 185 GLLVAVI 191
                 4433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2397.69
//
Query:       EHT98930.1  [L=79]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-27   94.5  13.9    4.3e-27   94.4  13.9    1.0  1  ZapB           Cell division protein ZapB
    0.00066   19.3   8.0    0.00072   19.2   8.0    1.0  1  PspA_IM30      PspA/IM30 family
     0.0014   18.6  10.4       0.09   12.8   3.7    2.0  2  CtIP_N         Tumour-suppressor protein CtIP N-terminal doma
     0.0026   17.6  10.4     0.0027   17.6  10.4    1.1  1  KASH_CCD       Coiled-coil region of CCDC155 or KASH
     0.0027   17.3   5.8     0.0032   17.0   5.8    1.2  1  Leu_zip        Leucine zipper
  ------ inclusion threshold ------
      0.012   15.8  10.1      0.014   15.6  10.1    1.1  1  Tropomyosin_1  Tropomyosin like
      0.017   15.2   6.3       0.02   15.0   6.3    1.1  1  ADIP           Afadin- and alpha -actinin-Binding
      0.023   15.3  11.5       0.18   12.5  11.5    1.9  1  YabA           Initiation control protein YabA
      0.024   14.7   8.3      0.027   14.6   8.3    1.1  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
      0.025   14.6  10.5      0.033   14.2  10.5    1.1  1  DHR10          Designed helical repeat protein 10 domain
      0.032   14.5   7.1      0.042   14.1   7.1    1.2  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
      0.036   13.9   8.1      0.081   12.8   2.2    2.2  2  GIT_CC         GIT coiled-coil Rho guanine nucleotide exchang
      0.037   13.3   5.7      0.038   13.3   5.7    1.0  1  HemX           HemX, putative uroporphyrinogen-III C-methyltr
      0.037   14.4   0.5       0.04   14.2   0.5    1.2  1  DUF4156        Domain of unknown function (DUF4156)
      0.045   14.0   7.7      0.053   13.7   7.7    1.2  1  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding
      0.052   13.8   8.3      0.058   13.6   8.3    1.1  1  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
      0.062   11.8   3.5      0.066   11.7   3.5    1.1  1  Herpes_UL6     Herpesvirus UL6 like
      0.071   13.8   1.9      0.081   13.6   1.9    1.2  1  Occludin_ELL   Occludin homology domain
      0.089   12.4   7.8        0.1   12.2   7.8    1.0  1  DUF2968        Protein of unknown function (DUF2968)
      0.098   12.8  10.1          2    8.6   2.5    2.5  2  K-box          K-box region
       0.11   12.8   8.1       0.13   12.6   8.1    1.0  1  Uso1_p115_C    Uso1 / p115 like vesicle tethering protein, C 
       0.12   11.7   6.8       0.13   11.5   6.8    1.0  1  DUF3450        Protein of unknown function (DUF3450)
       0.16    9.8   3.9       0.18    9.7   3.9    1.1  1  V_ATPase_I     V-type ATPase 116kDa subunit family
        0.2   10.8   4.4       0.23   10.6   4.4    1.0  1  dCache_2       Cache domain
        0.2   11.9  10.6        1.2    9.4   0.1    2.8  3  HALZ           Homeobox associated leucine zipper
       0.31   11.1   8.6          1    9.4   4.7    2.1  2  DUF2205        Short coiled-coil protein
        0.4   10.8  10.4        1.2    9.3  10.4    1.7  1  Cep57_CLD_2    Centrosome localisation domain of PPC89
       0.47   11.0  11.8       0.55   10.8  11.8    1.1  1  APG6_N         Apg6 coiled-coil region
       0.57   10.6   9.9        2.2    8.7   9.9    1.8  1  NUDE_C         NUDE protein, C-terminal conserved region
       0.59   10.6   5.7        3.5    8.1   3.1    2.1  2  FlaC_arch      Flagella accessory protein C (FlaC)
       0.59    9.4   5.0       0.33   10.2   2.7    1.6  2  CorA           CorA-like Mg2+ transporter protein
       0.92    9.7  10.2       0.98    9.6   2.2    2.4  3  bZIP_1         bZIP transcription factor
        1.1    9.6   9.3       0.99    9.8   3.8    2.4  2  TSC22          TSC-22/dip/bun family
        1.5    9.1   9.6        6.1    7.1   9.6    1.8  1  Spc24          Spc24 subunit of Ndc80
        2.4    8.8   9.2         12    6.6   9.2    2.1  1  SlyX           SlyX
        3.1    7.6  10.8        1.6    8.5   5.2    2.1  2  DivIC          Septum formation initiator


Domain annotation for each model (and alignments):
>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4  13.9   8.6e-30   4.3e-27       1      71 []       1      78 [.       1      78 [. 0.99

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 8.6e-30
        ZapB  1 mslelLeqLEskiqkaidtitlLqmeieeLkeeneelkeenrele.......eeneqlkeereawqerlkkLLgklee 71
                ms+e++e+LE+k+q+aidtitlLqmeieeLke+n++l +e+++         +en++lkee+  wqerl++LLgk+ee
  EHT98930.1  1 MSFEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAgnhealmRENQHLKEEQHVWQERLRALLGKMEE 78
                9***************************************************************************97 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   8.0   1.4e-06   0.00072      14      83 ..       9      78 ..       5      79 .] 0.95

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-06
   PspA_IM30 14 iselldkaeDPekileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkgee 83
                + +++++a D+  +l+ +i++++++ +++r+++ ++ +++ +l r+ +  ke+   ++++ +a+L k ee
  EHT98930.1  9 LEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGKMEE 78
                56789**********************************************************9988766 PP

>> CtIP_N  Tumour-suppressor protein CtIP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   3.7   0.00018      0.09      86     119 ..       8      41 ..       4      42 .. 0.91
   2 !   10.3   1.2    0.0011      0.53      33      61 ..      44      72 ..      39      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00018
      CtIP_N  86 efessklqslqlitiLtnEmntLkeenkkLkeel 119
                  +e + +q +  it L+ E ++Lke+n++L++e 
  EHT98930.1   8 KLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEA 41 
                 5788899************************996 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
      CtIP_N 33 daqrleelfsknqqlreqqkalkenikvl 61
                 a + e+l+  nq+l+e+q++ +e ++ l
  EHT98930.1 44 AAGNHEALMRENQHLKEEQHVWQERLRAL 72
                56678999999***********9999887 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  10.4   5.3e-06    0.0027      55     114 ..      13      72 ..       4      79 .] 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.3e-06
    KASH_CCD  55 tQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikl 114
                 +Qqa+    ll+ E+eelk+  ++l  ++++++ + + l +enq+L+++ +  qe+++ l
  EHT98930.1  13 VQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRAL 72 
                 7***********************************************999999987665 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   5.8   6.4e-06    0.0032     127     177 ..      19      69 ..       4      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.4e-06
     Leu_zip 127 gaeLLkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkel 177
                 ++ LL++eie+Lke+n++L++  ++   + + +++e+++l+++ +  q++l
  EHT98930.1  19 TITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERL 69 
                 689************************************999887777665 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6  10.1   2.8e-05     0.014      38     105 ..       7      78 ..       4      79 .] 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-05
  Tropomyosin_1  38 ksLtkknqqleeevekleeklkeakekae....esekkktnnealtrkiqlLEeeleesdkkLkettekLre 105
                    ++L+ k+qq+ + +  l+ +++e ke+++    e+++++ n eal r +q L ee    +++L+  + k++e
     EHT98930.1   7 EKLEAKVQQAIDTITLLQMEIEELKEQNNnlrnEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGKMEE 78 
                    5678888888888888887777777665411115566666778**********************9999987 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   6.3     4e-05      0.02      56     111 ..       7      62 ..       2      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-05
        ADIP  56 eslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqkl 111
                 e+l++++++   +i+ lq +ie lk+q+  l++e++ +  ++  l +++++l++  
  EHT98930.1   7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQ 62 
                 88999*******************************88888888888888877654 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  11.5   0.00036      0.18       7      67 ..       3      63 ..       2      78 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00036
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXX CS
        YabA  7 fdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkels 67
                f+ +e+le ++++  ++++ l++e++el e+n++L+ e ++   + e   +++++ k+e++
  EHT98930.1  3 FEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQH 63
                5678899999999999999999999999999999999966654444332222222222222 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   8.3   5.5e-05     0.027      70     142 ..       6      78 ..       2      79 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-05
     UPF0242  70 leekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                 +e+ eak+++  + ++  + ++eel+e++++L++e ++   + e l +enq+L+e+ +  +e   +l+ ++ee
  EHT98930.1   6 FEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGKMEE 78 
                 56667788887788899999**********************************9988888877777777766 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  10.5   6.6e-05     0.033      24      99 ..       2      74 ..       1      78 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.6e-05
       DHR10 24 kidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlre 99
                + ++++++e+ ++++i+ +  ++ e+++l+e++ +   lr++ ++   +++ l r+ ++l+     ++e+l  l  
  EHT98930.1  2 SFEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNN---LRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLG 74
                6799*********************9999988765...5677777778888********************98765 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   7.1   8.4e-05     0.042      30      99 ..      12      78 ..       4      79 .] 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.4e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 30 elleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99
                  ++ ++ +    lq e+eel+++ N+l +e ++a  ++   e+l+ e + lkee    +++l++l  ++e+
    EHT98930.1 12 KVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNH---EALMRENQHLKEEQHVWQERLRALLGKMEE 78
                  6666777777899******************999865...99*********************9999886 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.2   0.00016     0.081      40      65 ..      14      39 ..       4      40 .. 0.83
   2 ?    4.8   0.4     0.052        26      33      56 ..      49      72 ..      41      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
      GIT_CC 40 tslsdelrlLQskvqkLqaeNaqlrd 65
                ++  d ++lLQ ++++L++ N++lr+
  EHT98930.1 14 QQAIDTITLLQMEIEELKEQNNNLRN 39
                556689******************97 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.052
      GIT_CC 33 qqLlkvNtslsdelrlLQskvqkL 56
                ++L++ N++l++e +  Q+ +  L
  EHT98930.1 49 EALMRENQHLKEEQHVWQERLRAL 72
                679999****99999999888766 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.7   7.6e-05     0.038      37     102 ..      10      75 ..       2      79 .] 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.6e-05
        HemX  37 vaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga 102
                  a++qq++ ++   + ++e++keq+++l ++ q++a++ eal +e+++l+++++  q++l ++ g+
  EHT98930.1  10 EAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGK 75 
                 47899999999999999********************************************99987 PP

>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.5   8.1e-05      0.04      39      76 ..      23      60 ..       8      75 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.1e-05
     DUF4156 39 ftsnkelvrgaandLrneAaalGgntivlvtstatete 76
                ++ + e +++++n+LrneA++  gn   l+ +++  +e
  EHT98930.1 23 LQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKE 60
                5667778899***************9888887765554 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   7.7   0.00011     0.053      11      79 ..       3      68 ..       1      79 [] 0.59

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00011
  TMF_TATA_bd 11 vqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqer 79
                  +++e+l++++++    ++ l+ e+e+l+++ +++r+e  +   + e+l +++++l+e   e    qer
   EHT98930.1  3 FEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKE---EQHVWQER 68
                 5677777777777777777777777777777777777777766666666655554443...33333344 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   8.3   0.00012     0.058      78     150 ..       7      79 .]       2      79 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00012
  Jnk-SapK_ap_N  78 eeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkel 150
                    e+le + +q  +    lq ++e+l+e+n++l   a+naa   ++l ++++ lk+e+   +er + ll k+ e+
     EHT98930.1   7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGKMEEV 79 
                    5677777777788888999*************************************9999*****99998875 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.5   0.00013     0.066     364     420 ..       3      60 ..       1      78 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
  Herpes_UL6 364 nsvikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakk.eakarevdl 420
                  +v++ le ++++ +dti+ L+ e e l++++++l++e ++++ ++++  +++++ + 
  EHT98930.1   3 FEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEAlMRENQHLKE 60 
                 589***********************************99997766654333333322 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.9   0.00016     0.081      21      82 ..       3      64 ..       1      78 [. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00016
  Occludin_ELL 21 YkeYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkrc 82
                  ++ + +l+a+++++ ++++ L+ e++elke++++ ++ +++   + + l ++++++++++++
    EHT98930.1  3 FEVFEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHV 64
                  67789999999999999999999999999999977777777677777777777776666654 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.8    0.0002       0.1     103     170 ..       8      75 ..       6      79 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
     DUF2968 103 kleaqkaqlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrq 170
                 klea+ +q+   i+  + ++e+L+++ +  r+  q+ a + +++ +e + L+++++  q++lral  +
  EHT98930.1   8 KLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGK 75 
                 78999999999999999999999999999999999999999999999999999999999999998665 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.5    0.0041         2      63      91 ..      12      40 ..       1      43 [. 0.56
   2 ?    7.7   1.4     0.008         4       7      35 ..      47      75 ..      42      79 .] 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0041
       K-box 63 KeqllleeieelkkkekqleeenkeLrek 91
                K q  ++ i  l+ + ++l+e+n++Lr++
  EHT98930.1 12 KVQQAIDTITLLQMEIEELKEQNNNLRNE 40
                44444555555555555555555555554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.008
       K-box  7 eeeelkqEvskLkkeieklqrsqRkllGe 35
                ++e l +E ++Lk+e +  q+ +R llG+
  EHT98930.1 47 NHEALMRENQHLKEEQHVWQERLRALLGK 75
                567899*********************95 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   8.1   0.00026      0.13       4      73 ..       7      74 ..       4      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00026
  Uso1_p115_C  4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeeke 73
                 ++le +++++ d  + l+ e+++l+++ ++l+++   ++a+ + + l  en+ l++e+   +++l++   
   EHT98930.1  7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNE--AQNAAGNHEALMRENQHLKEEQHVWQERLRALLG 74
                 789******************************9..4555555566778999999999999999887655 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.8   0.00027      0.13      19      90 ..       7      78 ..       3      79 .] 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
     DUF3450 19 dqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqiee 90
                ++++++ ++a+++    q +i++l+++ ++l +e +++    e+l  +n++l++ +   ++++  l  ++ee
  EHT98930.1  7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALLGKMEE 78
                566667777777777777777777777777777777777777777777777777777777777777666665 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.9   0.00035      0.18      67     113 ..      23      69 ..       3      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00035
  V_ATPase_I  67 eekeldeleeelekleeelkelnenleklkkelnelvelkavlekak 113
                  + e++el+e+ ++l +e ++   n+e+l +e ++l+e+++v ++  
  EHT98930.1  23 LQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERL 69 
                 57889999999999999999999999999999999999999998754 PP

>> dCache_2  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.4   0.00047      0.23      22      88 ..       7      76 ..       4      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
    dCache_2 22 ellksevdsaielie..yeknsleeslkesLksrveeaysiaeeiyekykn.elseeeakklikealrsi 88
                e+l+++v++ai++i+    + +  ++ +++L++++++a    e + +++++ +  ++  +++++++l ++
  EHT98930.1  7 EKLEAKVQQAIDTITllQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHlKEEQHVWQERLRALLGKM 76
                789************6666666777888999999999999999999998885555555999999999887 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       5.5   2.8e+03      29      36 ..       7      14 ..       6      15 .. 0.66
   2 ?    7.4   2.5      0.01       5.1      17      36 ..      23      42 ..      22      43 .. 0.89
   3 ?    9.4   0.1    0.0024       1.2      20      34 ..      47      61 ..      45      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.5
        HALZ 29 ekLkaelq 36
                ekL+a++q
  EHT98930.1  7 EKLEAKVQ 14
                56777776 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.01
        HALZ 17 LksdydsLkkenekLkaelq 36
                L+++ + Lk++n++L++e q
  EHT98930.1 23 LQMEIEELKEQNNNLRNEAQ 42
                788999**********9987 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0024
        HALZ 20 dydsLkkenekLkae 34
                ++++L +en+ Lk e
  EHT98930.1 47 NHEALMRENQHLKEE 61
                799*********998 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.7    0.0021         1      19      55 ..       7      43 ..       1      57 [. 0.84
   2 ?    4.4   0.3     0.074        37      17      42 ..      54      79 .]      45      79 .] 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0021
     DUF2205 19 erLqqqakeLqssLqaLaervdeVkeehdKLesenrf 55
                e+L++++++  ++   L   ++e ke ++ L++e + 
  EHT98930.1  7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQN 43
                78999999999***********************985 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.074
     DUF2205 17 arerLqqqakeLqssLqaLaervdeV 42
                + ++L++  +  q+ L+aL+ + +eV
  EHT98930.1 54 ENQHLKEEQHVWQERLRALLGKMEEV 79
                34678888889999999999999887 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.4    0.0024       1.2       8      61 ..       9      69 ..       6      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0024
  Cep57_CLD_2  8 LqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneLkaevealrkE.......L 61
                 L+ +  ++   +   + e+++L   +++  +  ++A  +++ L++e+ +l++E       L
   EHT98930.1  9 LEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEqhvwqerL 69
                 666666777777788999**********************************977754333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.8    0.0011      0.55      56     122 ..       6      72 ..       2      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0011
      APG6_N  56 leklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsl 122
                 +ekle++ ++++  +  l+ e eel+++ ++l++e+++   + e+ +re + l+ e+   +e+l++l
  EHT98930.1   6 FEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRAL 72 
                 5677777777777777777777777777777777777777777777777777777777777777666 PP

>> NUDE_C  NUDE protein, C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.9    0.0045       2.2       3      60 ..       7      71 ..       5      78 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0045
      NUDE_C  3 EDlEskyNqaIERnvllEeeikagEqErEsLrievQR.......LrDelsDLkveleiiqeklrk 60
                E lE k  qaI    ll  ei +  +   +Lr e Q        L  e + Lk e ++ qe+lr+
  EHT98930.1  7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNaagnheaLMRENQHLKEEQHVWQERLRA 71
                88*******************66666666788888754444444777778888888888888886 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.1    0.0071       3.5       3      34 ..       7      38 ..       6      43 .. 0.85
   2 ?    5.1   0.2      0.06        30       4      41 ..      36      73 ..      34      79 .] 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0071
   FlaC_arch  3 delEnklsklsteletvkkeneelsksveelk 34
                ++lE k+++   +++ ++ e+eel+++ ++l 
  EHT98930.1  7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLR 38
                68999999999999999999999999998876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.06
   FlaC_arch  4 elEnklsklsteletvkkeneelsksveelkenVkdll 41
                +l n+ ++   + e + +en++l+++ +  +e+ + ll
  EHT98930.1 36 NLRNEAQNAAGNHEALMRENQHLKEEQHVWQERLRALL 73
                67788888888999999********9999888888887 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   0.00065      0.33     194     232 ..       6      44 ..       2      47 .. 0.93
   2 ?   -1.2   0.0       2.1     1e+03     197     220 ..      51      74 ..      46      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00065
        CorA 194 lrdlldelerllemlealrerleslqdtyssllserlNr 232
                 ++ l+ ++++++++++ l+  +e l+++ ++l +e +N 
  EHT98930.1   6 FEKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNA 44 
                 788999********************************5 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
        CorA 197 lldelerllemlealrerleslqd 220
                 l+ e ++l e+ ++ +erl+ l  
  EHT98930.1  51 LMRENQHLKEEQHVWQERLRALLG 74 
                 566677788888888888887765 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.0    0.0071       3.5      29      62 ..       7      40 ..       4      42 .. 0.68
   2 ?    9.6   2.2     0.002      0.98      30      52 ..      22      44 ..      18      50 .. 0.84
   3 ?    4.6   0.3      0.07        35      36      59 ..      49      72 ..      45      77 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0071
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 29 eeLerrvkaLekeNksLkseleelkkevekLksk 62
                e+Le +v++     + L+ e+eelk+++++L+++
  EHT98930.1  7 EKLEAKVQQAIDTITLLQMEIEELKEQNNNLRNE 40
                6677777777777777777777777777777765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.002
                HHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 30 eLerrvkaLekeNksLkseleel 52
                 L+ + ++L+++N +L++e+++ 
  EHT98930.1 22 LLQMEIEELKEQNNNLRNEAQNA 44
                589999***********999885 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.07
                HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 36 kaLekeNksLkseleelkkevekL 59
                +aL  eN+ Lk+e    ++    L
  EHT98930.1 49 EALMRENQHLKEEQHVWQERLRAL 72
                688899999999977666666555 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.8     0.002      0.99      21      45 ..      18      42 ..       4      48 .. 0.83
   2 ?    3.2   0.3      0.22   1.1e+02      32      43 ..      50      61 ..      45      75 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.002
       TSC22 21 ekIkeLeernseleeENslLkalas 45
                ++I+ L+++++el+e+N+ L++ a 
  EHT98930.1 18 DTITLLQMEIEELKEQNNNLRNEAQ 42
                6788889999999999999998775 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.22
       TSC22 32 eleeENslLkal 43
                +l +EN+ Lk+ 
  EHT98930.1 50 ALMRENQHLKEE 61
                566677777643 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.6     0.012       6.1       1      50 [.       8      60 ..       8      78 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
       Spc24  1 kldnekfriakelsdleselesleselaelkeeleeleeesee...keserve 50
                kl+ + ++++  ++ l++e+e+l+++ ++l++e ++   + e+   ++++++e
  EHT98930.1  8 KLEAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEAlmrENQHLKE 60
                57888999999999999999999999999999999998888777754444433 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.2     0.024        12      16      58 ..      10      52 ..       4      79 .] 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.024
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX 16 edtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58
                e  +++  d+++  q +i++l++q + l+++ ++++ +++a  
  EHT98930.1 10 EAKVQQAIDTITLLQMEIEELKEQNNNLRNEAQNAAGNHEALM 52
                4455555677777777777777777777777776666655443 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.2    0.0032       1.6      21      51 ..      15      45 ..       3      51 .. 0.71
   2 ?    3.1   0.3      0.16        81      27      50 ..      49      72 ..      45      76 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0032
                HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 21 qlkqeiaalqaelaklkaeneeLeaevkdLk 51
                q    i+ lq e+++lk++n++L  e ++  
  EHT98930.1 15 QAIDTITLLQMEIEELKEQNNNLRNEAQNAA 45
                4445677788888888888888888887764 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
                HHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC 27 aalqaelaklkaeneeLeaevkdL 50
                +al +e++ lk+e+   +++++ L
  EHT98930.1 49 EALMRENQHLKEEQHVWQERLRAL 72
                567778888888887777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2583  (0.144068); expected 358.6 (0.02)
Passed bias filter:                     1031  (0.0575046); expected 358.6 (0.02)
Passed Vit filter:                       195  (0.0108762); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 578.23
//
Query:       EHT98931.1  [L=161]
Description: ribonuclease E (RNase E) inhibitor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-35  122.8   0.1    1.5e-35  122.6   0.1    1.0  1  RraA-like      Aldolase/RraA
  ------ inclusion threshold ------
      0.086   13.0   0.0       0.13   12.5   0.0    1.2  1  baeRF_family5  Bacterial archaeo-eukaryotic release factor fa
       0.18   11.8   0.7         17    5.3   0.1    2.1  2  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> RraA-like  Aldolase/RraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   2.4e-39   1.5e-35       1     149 [.       5     152 ..       5     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 2.4e-39
                 HHHHHHH...........CEE-SSBSTB.TT.EESEEEEEEEEEESS.BGHHHHHHHTS--TTEEEEEESTT.SSSSSECE-HHHHHHHHHTTBSEEEE CS
   RraA-like   1 tadvsDa...........lkklggrsggirplersfvGpavTvkvveadnslvkealeeagpgdvlVvdgggdeslraallGgllataakangvaGvvv 88 
                 t++++D            + ++ggr++        f G+++Tvk++e dn l++++lee g+g+vl++dggg  s r+al+  +la++a++n+++G+vv
  EHT98931.1   5 TSELCDIyheevnvveplFSNFGGRTS--------FGGQITTVKCFE-DNGLLYDLLEENGRGRVLLIDGGG--SVRRALVDAQLARLAAQNEWEGIVV 92 
                 567888877777777777778888888........99**********.************************..88*********************** PP

                 EEEES-HHHHTTSSSEEEEEEE-SSB-B-S.STSEESS-EEETTEEE-TTSEEEEETTEEE CS
   RraA-like  89 dGavRDvaelreldfpvfargvtprkkpkkkgkgevnvpveiggvtvkpgdlivaDedGvv 149
                 +G vR v+el+el++++ a ++ p++   + g ge +v v++ggvt+ +gd ++aD+ G++
  EHT98931.1  93 YGSVRQVDELEELEIGIQAIAAIPVGAAGE-GIGESDVRVNFGGVTFFSGDHLYADNTGMI 152
                 *************************96666.****************************98 PP

>> baeRF_family5  Bacterial archaeo-eukaryotic release factor family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05      0.13      76     104 ..      76     104 ..      73     112 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
  baeRF_family5  76 skleklakereweeiylvGekeeakelee 104
                    ++l +la+++ewe i++ G+  +++elee
     EHT98931.1  76 AQLARLAAQNEWEGIVVYGSVRQVDELEE 104
                    6799**********************997 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0032        19      13      38 ..      56      81 ..      51      86 .. 0.79
   2 ?    5.3   0.1    0.0029        17     141     162 ..     133     154 ..      87     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0032
                 ETTCEEEES--SCHHHHHHHHHHHHH CS
  Lactamase_B 13 gdggviLiDtGtsteaaraalelaal 38
                 g g+v+LiD G+s ++a+   +la+l
   EHT98931.1 56 GRGRVLLIDGGGSVRRALVDAQLARL 81
                 7799************9987766665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0029
                  TTCCEEEECTTTSSHHCCCCCC CS
  Lactamase_B 141 gggkvlftGDallagetgridl 162
                   gg + f+GD l+a +tg+i  
   EHT98931.1 133 FGGVTFFSGDHLYADNTGMILS 154
                  578999***********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1262.70
//
Query:       EHT98932.1  [L=445]
Description: molecular chaperone and ATPase component of HslUV protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-49  168.1   0.3    1.7e-40  139.0   0.1    2.4  2  AAA_2            AAA domain (Cdc48 subfamily)
    8.9e-16   58.5   0.0    1.3e-06   28.9   0.0    3.1  3  AAA              ATPase family associated with various cellul
    1.9e-07   31.2   0.1      1e-05   25.6   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
    5.2e-07   30.0   0.0    0.00019   21.7   0.0    2.6  2  AAA_22           AAA domain
    4.4e-06   26.7   0.4    2.2e-05   24.4   0.0    2.4  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    2.4e-05   23.6   0.2     0.0011   18.1   0.0    2.3  2  MCM              MCM P-loop domain
    8.8e-05   22.0   0.3     0.0042   16.5   0.0    3.1  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0005   20.5   0.3     0.0016   18.8   0.1    2.1  2  AAA_16           AAA ATPase domain
    0.00081   19.9   0.0     0.0032   18.0   0.0    2.1  1  AAA_18           AAA domain
     0.0011   18.7   0.1      0.022   14.5   0.0    2.6  3  Sigma54_activat  Sigma-54 interaction domain
     0.0015   18.3   0.1      0.096   12.4   0.0    2.7  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0065   16.2   0.1      0.031   14.0   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
       0.01   15.3   0.3      0.035   13.5   0.0    2.1  2  TniB             Bacterial TniB protein
       0.01   16.0   0.0      0.025   14.8   0.0    1.7  1  AAA_33           AAA domain
      0.015   14.5   0.5      0.059   12.6   0.0    1.9  2  TIP49            TIP49 P-loop domain
      0.016   15.5   0.4      0.097   12.9   0.1    2.5  3  AAA_28           AAA domain
      0.016   15.2   0.0        5.4    7.1   0.0    2.4  2  AAA_14           AAA domain
       0.03   14.0   0.2       0.11   12.2   0.2    2.0  1  AAA_24           AAA domain
      0.044   13.3   0.0       0.13   11.7   0.0    1.8  1  AAA_7            P-loop containing dynein motor region
      0.057   13.9   0.0       0.14   12.6   0.0    1.7  1  ABC_tran         ABC transporter
      0.064   12.5   0.0       0.14   11.4   0.0    1.5  1  Zeta_toxin       Zeta toxin
      0.071   12.7   0.0       0.16   11.6   0.0    1.6  1  SRP54            SRP54-type protein, GTPase domain
      0.081   12.7   0.0        1.3    8.8   0.0    2.2  2  DEAD             DEAD/DEAH box helicase
      0.082   12.8   0.0       0.16   11.8   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
      0.089   12.4   0.3       0.27   10.9   0.1    1.8  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.089   12.8   0.0        0.2   11.7   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.097   13.1   0.0       0.88   10.0   0.0    2.3  2  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.2e-09   4.1e-06       5      63 ..      52     110 ..      49     115 .. 0.90
   2 !  139.0   0.1   2.5e-43   1.7e-40      18     171 .]     186     331 ..     170     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.2e-09
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT- CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgy 63 
                 +il++gptgvGkte+a+ la+l ++    ++i ++a++++e    ++ev++++  l+ ++  +
  EHT98932.1  52 NILMIGPTGVGKTEIARRLAKLANA----PFIKVEATKFTEvgyvGKEVDSIIRDLTDSAIKM 110
                 89**********************6....************9999999999999998877655 PP

  == domain 2  score: 139.0 bits;  conditional E-value: 2.5e-43
                 H.....HHHHHHHHTT-............-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HHHHHHHH CS
       AAA_2  18 e.....lakalaellfv........kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdLL 100
                 +     +++++++l+++        +k +kl +++a +ll eee+++lv+ ++ +++++ ++e++Giv++DEidKi+++   +  g+dvSregVqrdLL
  EHT98932.1 186 ImappgMEEMTSQLQSMfqnlggqkQKPRKLKIKEAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRggqNAGGPDVSREGVQRDLL 284
                 333333555555555555569*999999****************************************************988899************* PP

                 HHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2 101 qileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                 +++eg+t+++k+g +v+t++ilfI++gaf+++ +sd                       lipEl+gRlp++
  EHT98932.1 285 PLVEGCTVSTKHG-MVKTDHILFIASGAFQVASPSD-----------------------LIPELQGRLPIR 331
                 *************.**********************.......................**********86 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         3     2e+03      83     120 ..       7      45 ..       2      49 .. 0.79
   2 !   28.9   0.0     2e-09   1.3e-06       1      50 [.      53     100 ..      53     136 .. 0.81
   3 !   25.8   0.0   1.7e-08   1.1e-05      41     130 ..     228     334 ..     189     336 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHTTTSSSTEEEEEEESS..GGGSTHHHH CS
         AAA  83 ervvnqLlteldgvkkkeskvivigatnr..pdkldpall 120
                 +++v++L +++ g+++  ++ + i+  nr    +ld++l+
  EHT98932.1   7 REIVSELNRFIIGQDSA-KRAVAIALRNRwrRMQLDEELR 45 
                 78999999999999996.5599999999976667777776 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2e-09
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.STTHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.yvgesekkirelf 50 
                 +l++Gp G+GKT +a+ +ak ++++f++++++++++  yvg+  ++i   +
  EHT98932.1  53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVgYVGKEVDSI---I 100
                 699********************************334666554443...3 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 1.7e-08
                 HHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTTTS.......SSTEEEEEEESS....GGGSTHHHH CS
         AAA  41 esekkirelfkeakeka.....kpsilfiDEidalaksr...sgseseeeervvnqLlteldgvkkk.......eskvivigatnr....pdkldpall 120
                 e ++k+ +  +e+k+ a     ++ i+fiDEid+++k+     g+ + ++e v+  Ll+ ++g + +       ++++++i+ +      p++l p+l 
  EHT98932.1 228 EEAAKLVNP-EELKQDAidaveQHGIVFIDEIDKICKRGgqnAGGPDVSREGVQRDLLPLVEGCTVStkhgmvkTDHILFIASGAFqvasPSDLIPELQ 325
                 444444332.334555556665669*************99866667888899*************9999999996669999888766666888888888 PP

                 STTSSEEEET CS
         AAA 121 rgRfdrkiei 130
                  gR+ +++e+
  EHT98932.1 326 -GRLPIRVEL 334
                 .999888775 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-08     1e-05       1      41 [.      52      92 ..      52     164 .. 0.80
   2 ?    2.9   0.1      0.15     1e+02      57      77 ..     241     261 ..     219     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.5e-08
                EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHH CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedl 41
                ++l++Gp+G+gK+e+a+rla++ n+++  v  t++t+   +
  EHT98932.1 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92
                689*******************************9986555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.15
                 --------G-SEEEEESGGG- CS
       AAA_5  57 splvraaregeilvlDEvera 77 
                 + + +a+++  i+++DE++++
  EHT98932.1 241 QDAIDAVEQHGIVFIDEIDKI 261
                 55667888999********97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.8e-07   0.00019       5      65 ..      50     101 ..      45     135 .. 0.78
   2 ?    5.6   0.0     0.026        18      37     103 ..     175     261 ..     153     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.8e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralg 65 
                  + ++ +G++G+GKT  +rrl++ +         ++++++v++++ t+   + +e+ +++ 
  EHT98932.1  50 PKNILMIGPTGVGKTEIARRLAKLA---------NAPFIKVEATKFTEVGYVGKEVDSIIR 101
                 567899******************9.........***********9977666666555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.026
      AAA_22  37 e....erpevvfvtlpsstsskdllrellralglelka...................erlsseellealeqalraravielliiDEaqhl 103
                       +p+v  + +p+ ++ ++ l+ ++++lg ++ +                   +  + eel +   +a++++   +++ iDE++++
  EHT98932.1 175 IdlavTGPGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKprklkikeamkllieeeaaKLVNPEELKQDAIDAVEQH---GIVFIDEIDKI 261
                 1455566666667777777889999999999999999998888888887777765555666666666666666665...5599****986 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.5   3.6e+03      13      41 ..     198     229 ..     195     234 .. 0.59
   2 !   24.4   0.0   3.4e-08   2.2e-05       1      62 [.     337     407 ..     337     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.5
                    HHHHHHHHS...CTTTEEEEEHHHHHHHHHHH CS
  ClpB_D2-small  13 alkklekrl...kergvelevtdealdalaek 41 
                    +l+ + + l   k++  +l+++++++  + e+
     EHT98932.1 198 QLQSMFQNLggqKQKPRKLKIKEAMKLLIEEE 229
                    66777777755222446777777776666554 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.4e-08
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHT.....SBTTTBTCCHHHHHHHHTHH CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekg.....ydpeyGARpLrriiqreied 62 
                    Lt ++ ++I+++    +  ++k l++ +gv++++td+ ++ +ae++     + ++ GAR L ++++r +ed
     EHT98932.1 337 LTVNDFERILTEpnaSVTVQYKALMNtEGVNIHFTDDGIRRIAEAAwqvneTTENIGARRLHTVLERLMED 407
                    677889999999999999999***88899****************9888888999**************98 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06    0.0011      16      84 ..       7      77 ..       2     103 .. 0.80
   2 ?    3.0   0.1     0.069        46     121     135 ..     249     263 ..     244     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
                HHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-...EEEEEESSTSTHHHHHHHHHHHSSSE CS
         MCM 16 eklvksiapsiyghedvkkaillqlfggvkkkledktklrgdi...nvllvgdpgtaKsqlLkyveklapra 84
                +++v+ + + i+g+++ k+a++++l    ++ + d  +lr ++   n+l++g  g++K+++ ++++kla+  
  EHT98932.1  7 REIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLD-EELRHEVtpkNILMIGPTGVGKTEIARRLAKLANAP 77
                5788999999*****************99987777.67777655559*****************99887643 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.069
                 TTSEEEEESGGGSTC CS
         MCM 121 dkGvcciDefdkmke 135
                 ++G++ iDe+dk+ +
  EHT98932.1 249 QHGIVFIDEIDKICK 263
                 68**********865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.48   3.2e+02       4      19 ..      16      31 ..      14      38 .. 0.89
   2 !   16.5   0.0   6.3e-06    0.0042      24      55 ..      52      84 ..      48     101 .. 0.77
   3 ?   -0.9   0.0       1.4   9.1e+02     106     118 ..     249     261 ..     231     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.48
  Mg_chelatase  4 dvkGqeeakraleiaa 19
                   ++Gq++akra+ ia 
    EHT98932.1 16 FIIGQDSAKRAVAIAL 31
                  589***********96 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.3e-06
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsll.pplseeeal 55
                  n+l++Gp G GKt +a+rl++l  +p  + ea 
    EHT98932.1 52 NILMIGPTGVGKTEIARRLAKLAnAPFIKVEAT 84
                  9******************99862344455555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.4
  Mg_chelatase 106 hnGvLfLDElpef 118
                   ++G++f+DE+ ++
    EHT98932.1 249 QHGIVFIDEIDKI 261
                   79*******9876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.5e-06    0.0016      23      88 ..      49     114 ..      34     265 .. 0.66
   2 ?   -2.5   0.0       8.9   5.9e+03     107     127 ..     384     405 ..     308     412 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy.....salaqalareellrqllde 88 
                 +p ++l +G+ GvGK+ ++r+l++ +++    f++ +++++ +++ y     + +++ l +++ ++ + ++
  EHT98932.1  49 TPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF-TEVGYvgkevDSIIRDL-TDSAIKMVRSQ 114
                 5799*******************999988...766666666.22122222213344444.22333333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.9
      AAA_16 107 avpelagaea.srllellkrll 127
                 +v+e +  +  +rl+ +l rl+
  EHT98932.1 384 QVNETTENIGaRRLHTVLERLM 405
                 2222222222366666666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.8e-06    0.0032       1      25 [.      53      96 ..      53     152 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.8e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf...................g 25
                Il  G+ GvGKt++a++L+k+ +                    +
  EHT98932.1 53 ILMIGPTGVGKTEIARRLAKLANApfikveatkftevgyvgkeV 96
                7889****************965477766666655554444441 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.3e-05     0.022      20      61 ..      48      86 ..      32      89 .. 0.81
   2 ?   -1.8   0.0       3.3   2.2e+03     120     149 ..     201     230 ..     186     244 .. 0.74
   3 ?    0.4   0.0      0.69   4.6e+02      93     106 ..     249     262 ..     240     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
                     TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat 20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai 61
                      t+ ++l+ G +G+GK+ +ar + +    +++pf++v+ +++
       EHT98932.1 48 VTPKNILMIGPTGVGKTEIARRLAKL---ANAPFIKVEATKF 86
                     46789****************98765...5589999987765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.3
                      SEEESBTSSSEEE--EEEEEEESS-HHHHH CS
  Sigma54_activat 120 gevervGsskeikvdvriiaatnedleeav 149
                        ++ +G++k+++ +++i  a +  +ee+ 
       EHT98932.1 201 SMFQNLGGQKQKPRKLKIKEAMKLLIEEEA 230
                      468899999999998888888776555554 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.69
                      TTSEEEEETGGGS- CS
  Sigma54_activat  93 dgGtlfLDeigelp 106
                      ++G++f+Dei ++ 
       EHT98932.1 249 QHGIVFIDEIDKIC 262
                      68********9875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00014     0.096      10      60 ..      18      77 ..      10     137 .. 0.71
   2 ?    3.0   0.0      0.12        77      79      97 ..     244     262 ..     216     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
      RuvB_N 10 igqekvkeklkifieaakkr...eealdh......vllyGpPGlGkttlakiiakelgvk 60
                igq++ k  ++i+++   +r   +e+l h      +l++Gp G+Gkt +a+ +ak  ++ 
  EHT98932.1 18 IGQDSAKRAVAIALRNRWRRmqlDEELRHevtpknILMIGPTGVGKTEIARRLAKLANAP 77
                688888888888887765542222334344444449**************9999876665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
      RuvB_N  79 ltnleekdvlfideihrls 97 
                 +  +e++ ++fidei ++ 
  EHT98932.1 244 IDAVEQHGIVFIDEIDKIC 262
                 5678999********9986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.7e-05     0.031      47      73 ..      50      76 ..      36     104 .. 0.83
   2 ?   -1.5   0.0       2.8   1.8e+03      12      39 ..     109     136 ..      97     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-05
   IstB_IS21 47 kenivllGpsGvGKshlaialgveavr 73
                 +ni+++Gp+GvGK+ +a  l++ a +
  EHT98932.1 50 PKNILMIGPTGVGKTEIARRLAKLANA 76
                579***************999987755 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
   IstB_IS21  12 klpaqktledidfraarsldkrkvkeLa 39 
                 k+  ++ +e+ ++ra++++++r+++ L+
  EHT98932.1 109 KMVRSQAIEKNKYRAEEMAEERILDVLI 136
                 444677899999****999999998775 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.3e-05     0.035      32      95 ..      47     112 ..      34     135 .. 0.66
   2 ?   -2.8   0.0       5.2   3.5e+03     110     132 ..     242     262 ..     223     266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.3e-05
        TniB  32 rkrmpnlllvGdsnnGKtmivekFarlhppek.d.edaekvpvlvvqappkpdekrlyaaiLealg 95 
                 +  ++n+l++G++ +GKt i+++ a+l ++   + e ++  +v +v     +  ++l ++ ++ ++
  EHT98932.1  47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFiKvEATKFTEVGYVGKEVDSIIRDLTDSAIKMVR 112
                 44568********************98865431313334446666666665555555555555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.2
        TniB 110 qvlrllrelkvrvLiiDEihnll 132
                 +++   ++    ++ iDEi+++ 
  EHT98932.1 242 DAIDAVEQ--HGIVFIDEIDKIC 262
                 44444443..4578899999875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.7e-05     0.025       2      34 ..      53      85 ..      53     134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlr 34
                +l++G+ G+GK+  a+rl+k   a ++   + +
  EHT98932.1 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85
                69****************966556666555544 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.9e-05     0.059      23      88 ..      14      86 ..       4     112 .. 0.75
   2 ?   -0.4   0.1      0.79   5.2e+02     235     287 ..     198     258 ..     191     261 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.9e-05
                XXXXXXXXXXXXXXXXXXX.....XXX..X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 23 eeglvGqkkareaagvive.....lik..e..kklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88
                +  ++Gq +a++a+++ ++     +    e  ++++ + +L+ Gp+g Gkt +a  ++k    + pf+++ ++++
  EHT98932.1 14 NRFIIGQDSAKRAVAIALRnrwrrMQLdeElrHEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKF 86
                5568999999999998763222222221122256789*****************9999864..589999998875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.79
                 XXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXX..XXXXXXXXX CS
       TIP49 235 rpqdllsll.lqllkskkteiteklreeinkkvakyve.....egkaeiv..pGvlfiDev 287
                 + q+++  l  q++k++k  i+e ++  i++  ak v+     ++  + v   G++fiDe+
  EHT98932.1 198 QLQSMFQNLgGQKQKPRKLKIKEAMKLLIEEEAAKLVNpeelkQDAIDAVeqHGIVFIDEI 258
                 5555555542467788888888888877777777776521111222333333588999987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00015     0.097       2      64 ..      53     115 ..      52     133 .. 0.73
   2 ?   -0.8   0.0       2.4   1.6e+03      94     143 ..     116     165 ..     101     168 .. 0.70
   3 ?   -2.0   0.0       5.5   3.7e+03     123     142 ..     372     390 ..     352     425 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwv.edllafaervleeql 64 
                 i ++G+ + GKT ++++La+  + p ++  a++++e ++  +e +  +  +dl + a+++++ q+
  EHT98932.1  53 ILMIGPTGVGKTEIARRLAKLaNAPFIKVEATKFTEVGYVGKEVD--SIiRDLTDSAIKMVRSQA 115
                 899****************97689988877888888877666643..333677666666665554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.4
      AAA_28  94 geaeaeleaaarekrydlvfllppapeidddgeRredleereaiderlre 143
                 +e++++  ++++e+r+  v++ p    + + ++  e   +r+ + ++lre
  EHT98932.1 116 IEKNKYRAEEMAEERILDVLIPPAKNNWGQAEHTSEPSSARQSFRKKLRE 165
                 44344444566677777788888888887888888888888888888775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 5.5
      AAA_28 123 ddgeRredleereaiderlr 142
                 ddg Rr  + ++ +++e ++
  EHT98932.1 372 DDGIRRIAE-AAWQVNETTE 390
                 444444422.2222333222 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.018        12       3      36 ..      51      81 ..      49     125 .. 0.66
   2 ?    7.1   0.0    0.0081       5.4      43     117 ..     230     328 ..     196     343 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyi 36
                k +++ G+  vGKT ++++l+k        ++ +
  EHT98932.1 51 KNILMIGPTGVGKTEIARRLAKLAN---APFIKV 81
                568899**************96544...333333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0081
      AAA_14  43 dkkladpekllelileklkeekktylflDEiqev..........................pewekalkslvdegknldvivtGSnskllskeiatslag 115
                  +kl +pe+l +   + +  e++ ++f+DEi ++                          ++     k+ + +++++ +i++G  +    +++  +l+g
  EHT98932.1 230 AAKLVNPEELKQDAIDAV--EQHGIVFIDEIDKIckrggqnaggpdvsregvqrdllplvEGCTVSTKHGMVKTDHILFIASGAFQVASPSDLIPELQG 326
                 223334444444444433..68999*******9977777777777777777776666666555555555555555666666666666666666666666 PP

      AAA_14 116 rv 117
                 r 
  EHT98932.1 327 RL 328
                 65 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00017      0.11       2      33 ..      50      83 ..      49     131 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
      AAA_24  2 klkiliyGpsgiGKTtlakel..gpkplfidtek 33
                +++il++Gp g+GKT +a++l    ++ fi +e+
  EHT98932.1 50 PKNILMIGPTGVGKTEIARRLakLANAPFIKVEA 83
                689******************8877777887776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.13      34      58 ..      51      75 ..      44      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
       AAA_7 34 kpvllvGptGtGKtviikdllkkld 58
                k++l++GptG+GKt i+++l k  +
  EHT98932.1 51 KNILMIGPTGVGKTEIARRLAKLAN 75
                79**************999776554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00022      0.14      13      92 ..      52     163 ..      46     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00022
                 EEEEEESTTSSHHHHHHHHTTSS--........SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp........teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........................ 79 
                  + ++G++G GK+ +++ la+l +         +  e+ + gk+++++ +  +++ i+++  ++  +++++++e                         
  EHT98932.1  52 NILMIGPTGVGKTEIARRLAKLANApfikveatKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRAEEMaeerildvlippaknnwgqaehts 150
                 57799*****************99866666555223334447777779999999999999998777776666665667788888888777777775555 PP

                 ....HHHTCHHHHHHHS CS
                 ....xxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalskl 92 
                     +     + +++kl
  EHT98932.1 151 epssA----RQSFRKKL 163
                 33330....33333333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.14      13      54 ..      47      86 ..      37     120 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
  Zeta_toxin 13 qerPklillgGqpGAGKselaellkdelerqgnvvrldpDdl 54
                + +Pk il+ G +G GK+e+a+ l++    +  +++++++++
  EHT98932.1 47 EVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKF 86
                468*******************999876..788888777776 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.16       2      26 ..      51      75 ..      50      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                EEEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallk 26
                + il++G++G+GKT  + +La+l +
  EHT98932.1 51 KNILMIGPTGVGKTEIARRLAKLAN 75
                679************9999998765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0019       1.3      14      31 ..      50      67 ..      39      86 .. 0.87
   2 ?    1.3   0.0      0.38   2.5e+02      82     136 ..     206     264 ..     186     269 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0019
                TCEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
        DEAD 14 ggdvlvaaeTGsGKTlaf 31
                 +++l+ ++TG GKT+++
  EHT98932.1 50 PKNILMIGPTGVGKTEIA 67
                589************986 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.38
                 ETTSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSH......CTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx RF
        DEAD  82 iggvaardqlskldngvdivvgtpgrlddllstgkln......lsqvrflVlDEadrlldq 136
                 +gg++++  + k+++ +++++      ++l++ ++l+      ++q  ++ +DE+d++ + 
  EHT98932.1 206 LGGQKQKPRKLKIKEAMKLLIEEE--AAKLVNPEELKqdaidaVEQHGIVFIDEIDKICKR 264
                 567777666667755566666544..4555533333333434788999999*****98776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.16      91     121 ..      42      72 ..      12      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                  HHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  91 eelkellkdktsvlvGqSGvGKStLinallp 121
                  eel+++++ k ++++G++GvGK+ +  +l+ 
   EHT98932.1  42 EELRHEVTPKNILMIGPTGVGKTEIARRLAK 72 
                  689999999**************99999876 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00041      0.27      16      69 ..      52     110 ..      47     134 .. 0.81
   2 ?   -1.6   0.0       2.6   1.7e+03     102     135 ..     363     396 ..     343     422 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
                  EEEEEESTTSSHHHHHHHHHHHSSTS....SEEEEEEESEEHHHHHHHHHHCHHSS.GG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  ATP-synt_ab  16 rtlipgafgvGktvisqslskqsnsd....daiiyvgiGergnevaevleefpegt.im 69 
                  ++l++g  gvGkt+i++ l+k +n+     +a+ +  +G  g+ev +++++++++   m
   EHT98932.1  52 NILMIGPTGVGKTEIARRLAKLANAPfikvEATKFTEVGYVGKEVDSIIRDLTDSAiKM 110
                  6789******************988788666888999**********999999866433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.6
                  HTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 102 dqgknvlliadslsrwaeAlreislrlgempadq 135
                   +g n+ +  d + r aeA  ++   ++++ a++
   EHT98932.1 363 TEGVNIHFTDDGIRRIAEAAWQVNETTENIGARR 396
                  4777888888889999999999888888777765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0003       0.2      10      51 ..      40      84 ..      30      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
                HHHHHHHCH.TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE 10 lgkklakal.gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51
                l ++l +++  + il+ G+ G+GKT ++r lak  +    +v+  
  EHT98932.1 40 LDEELRHEVtPKNILMIGPTGVGKTEIARRLAKLANAPfiKVEAT 84
                5556666555667*******************9887665666655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0013      0.88       1      24 [.      53      76 ..      53     129 .. 0.78
   2 ?    0.0   0.0       1.6   1.1e+03      28      61 ..     228     261 ..     214     268 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallk 24
                  i++ Gp+g+GK+ +a++Lak    
    EHT98932.1 53 ILMIGPTGVGKTEIARRLAKLANA 76
                  6789*************8876554 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.6
  RNA_helicase  28 lkkkdsvysrnpeddfwdgYtgqevvvidDfgqv 61 
                   ++ ++ v   + ++d  d  +++ +v id++ ++
    EHT98932.1 228 EEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKI 261
                   44444555578899999************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2982.10
//
Query:       EHT98933.1  [L=176]
Description: peptidase component of the HslUV protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-23   80.7   0.1    1.6e-22   79.9   0.1    1.4  1  Proteasome  Proteasome subunit
  ------ inclusion threshold ------
      0.091   12.6   0.0       0.19   11.5   0.0    1.5  1  PspC        PspC domain


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.1   1.8e-26   1.6e-22       5     187 ..       2     169 ..       1     172 [. 0.94

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 1.8e-26
                 -EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEE.ETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTT CS
  Proteasome   5 ttvvGikgkdgvvlaadkratagskllskstveKifki.ddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrr 102
                 tt+v ++ ++ vv+++d +at g+++ +k +v+K++++ +d+++++faG +aDa tl++ +++++++++       ++         k+++++++++r 
  EHT98933.1   2 TTIVSVRRNGQVVIGGDGQATLGNTV-MKGNVKKVRRLyNDKVIAGFAGGTADAFTLFELFERKLEMHQ------GHLV--------KAAVELAKDWRT 85 
                 8*************************.6666**************************************......5555........788999999999 PP

                 TTSEEEEEEEEETTTEEEEEEEETTSEEEEES.SEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEE CS
  Proteasome 103 pfgvslliagvdeeggpeLyqidpsGsyieek.davaiGsgseaaktalekeykedltleeavelavkalkealerdklsgkniev 187
                 + +++ l a +   ++   + i+ +G++i+++ d +aiGsg  +a++a ++++  + t+  a ++++k+l+ a + + +++ n+++
  EHT98933.1  86 DRMLRRLEALLAVADESASLIISGNGDVIQPEnDLIAIGSGGPFAQAAARALL--ENTELGARDIVEKSLNIAGDICIYTNHNVNF 169
                 999999999999888888899***********9********************..99**************************987 PP

>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05      0.19       1      24 [.      33      56 ..      33      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
        PspC  1 krLyRspdnkvlgGVcaGlAeyfg 24
                k+  R  ++kv++G ++G A+ f 
  EHT98933.1 33 KKVRRLYNDKVIAGFAGGTADAFT 56
                7899999*************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1330.37
//
Query:       EHT98934.1  [L=313]
Description: essential cell division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-18   64.7   2.3    8.8e-18   64.5   0.0    2.2  2  SPOR            Sporulation related domain
  ------ inclusion threshold ------
      0.035   14.1  45.2      0.045   13.8  45.2    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit
       0.47    8.3  17.6       0.56    8.1  17.6    1.1  1  V_ATPase_I      V-type ATPase 116kDa subunit family
        2.3    7.7  23.2          3    7.3  23.2    1.2  1  Exonuc_VII_L    Exonuclease VII, large subunit
        3.6    6.4  24.0        5.3    5.9  24.0    1.3  1  ECM1            Extracellular matrix protein 1 (ECM1)
        3.9    5.6  40.8          5    5.3  40.8    1.1  1  PAT1            Topoisomerase II-associated protein PAT1
        4.5    7.3   0.0        4.5    7.3   0.0    3.1  2  DUF4366         Domain of unknown function (DUF4366)
        7.2    6.6   0.0        7.2    6.6   0.0    3.8  4  TRIQK           Triple QxxK/R motif-containing protein family


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.2         2   4.4e+03      50      63 ..     162     175 ..     120     195 .. 0.64
   2 !   64.5   0.0   3.9e-21   8.8e-18       2      72 ..     239     306 ..     238     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
                 SBCTCCHHHHHHHH CS
        SPOR  50 pfasreeAqaalkk 63 
                  ++ +++ q+++++
  EHT98934.1 162 QYQHQQQVQQFQRQ 175
                 44444444444433 PP

  == domain 2  score: 64.5 bits;  conditional E-value: 3.9e-21
                 TTBB--BS-EES-HHHHHHHHHHCCHHT--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS- CS
        SPOR   2 sggytvQvgafsseanAerlaakLrakgfaaavavvsgggglyrVrvGpfasreeAqaalkkLkaaagisa 72 
                 s++++vQ+g+f+  ++Ae ++a L+ +gf+   ++ ++ggg+ rV+vGpf++r+ A+  lk+L+a++ +++
  EHT98934.1 239 SQRWMVQCGSFKGTEQAESVRAALAFEGFE---SRLTSGGGWNRVVVGPFKDRASADSTLKRLRASGHSGC 306
                 789***************************...*******************************4455554 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  45.2     2e-05     0.045     109     254 ..     111     241 ..      56     271 .. 0.38

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
       TFIIA 109 saataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqqqqqqqq 207
                 s +t+ t + +  l    q+ a + +q+++ + +  n q+++++q   q++qqv    q+ ++q++v+++q+q+qq q+  ++ qq  + +qq+q+q++
  EHT98934.1 111 S-HTQLTDEQRQLL---EQMQADMRQQPTQLNEVPWNEQTPAQRQQTLQHQQQV----QQYQHQQQVQQFQRQQQQVQQRQQQVQQ--P-RQQIQEQHT 198
                 1.111111111111...2344444444444333323222222222222333333....5666666666666553332222222222..1.112122222 PP

       TFIIA 208 qqqqqqvqqqqqeesqqaqqasqe..qvagsqvessqtdgaedaleees 254
                 q qqqq +qqq    q a+ +  +  + + ++++ + + +++++++++ 
  EHT98934.1 199 QRQQQQNTQQQS---QPAPVT--RepTAQ-PKTQDTAKTKPAEKAASQR 241
                 221111111111...111111..111111.1222222222222222222 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  17.6   0.00025      0.56      31     129 ..     115     213 ..      82     272 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00025
  V_ATPase_I  31 rcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeeeeeeese 129
                  +de  + l+ +++ ++++ ++  +   +e+++++++++  ++ + +  +++++++++++++++++++++++++ ++ +++ ++  +++++++++++  
  EHT98934.1 115 LTDEQRQLLEQMQADMRQQPTQLNEVPWNEQTPAQRQQTLQHQQQVQQYQHQQQVQQFQRQQQQVQQRQQQVQQPRQQIQEQHTQRQQQQNTQQQSQPA 213
                 345555555555555555333332222222222222222222333333445556666666666666666666666655555554444443333332222 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  23.2    0.0013         3     128     236 ..      97     209 ..      93     261 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
  Exonuc_VII_L 128 apTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrlekl..asrlk.speellerkrqrldelee..rlera..lkkqlkkkrerleel 217
                   +pTP++  +       + + ql + +r+l ++++  ++++ ++l+++  +++ + + ++ l +++q+++++++  ++++   +++q++++++++++ 
    EHT98934.1  97 VPTPSEPTSGGE---VQSHTQLTDEQRQLLEQMQADMRQQPTQLNEVpwNEQTPaQRQQTL-QHQQQVQQYQHqqQVQQFqrQQQQVQQRQQQVQQP 189
                   566666554444...5667899999999999999999999999998854444442333333.33333333322002222111333355555555555 PP

  Exonuc_VII_L 218 kerl.kekleekkerlkklk 236
                   ++++ ++++++++++ ++++
    EHT98934.1 190 RQQIqEQHTQRQQQQNTQQQ 209
                   55552222222222221111 PP

>> ECM1  Extracellular matrix protein 1 (ECM1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  24.0    0.0024       5.3      43     182 ..      93     206 ..      31     255 .. 0.42

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0024
        ECM1  43 eevGyaappspplsrklpadhldtsqhdsefegqsevqppssqeaievqeeelpakqlpvekkvdeplpqeaiPlqeelpppqlpieqkevepsaakqe 141
                 ++v   +p  p++  +                       ++s+ +++ ++++l+++ ++  +  ++p+  +++P +e++p++++++ q++ +  ++ q+
  EHT98934.1  93 RQVTVPTPSEPTSGGE-----------------------VQSHTQLTDEQRQLLEQMQA--DMRQQPTQLNEVPWNEQTPAQRQQTLQHQQQ-VQQYQH 165
                 2222222222222222.......................22222222222222222222..1223344444455555544444444443333.222222 PP

        ECM1 142 eeilkskqkeekpaplaeqeepepeswnpaqhcqqgrsrgg 182
                 ++ +++ q++++  ++++q+  +p+   + qh q+++++++
  EHT98934.1 166 QQQVQQFQRQQQQVQQRQQQVQQPRQQIQEQHTQRQQQQNT 206
                 22234444444444444444445555555555544443332 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  40.8    0.0022         5     191     312 ..     119     234 ..      77     263 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0022
        PAT1 191 srkvlsleEvEaamraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqsk.qakp 288
                 +r+   le + a mr+q ++ ++ + +    +q+Pa+ q++ ++++ q ++++++qq+++ +++qqq q++++q qq ++q+ + + +qr+q++ ++++
  EHT98934.1 119 QRQ--LLEQMQADMRQQPTQLNEVPWN----EQTPAQRQQTLQHQQ-QVQQYQHQQQVQQFQRQQQQVQQRQQQVQQ-PRQQIQEQHTQRQQQQnTQQQ 209
                 222..3566666666666555544333....344443332222211.112222222222222222222222222222.222222222222222201122 PP

        PAT1 289 aepsasseaqe.akqqappakvqpt 312
                 ++p++ +++ + + +++ +ak++p 
  EHT98934.1 210 SQPAPVTREPTaQPKTQDTAKTKPA 234
                 2222222211111111111222222 PP

>> DUF4366  Domain of unknown function (DUF4366)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.002       4.5     105     143 ..      21      60 ..       8      62 .. 0.42
   2 ?  -10.4  18.7         8   1.8e+04      95     115 ..     187     207 ..      90     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.002
     DUF4366 105 pee.peeepekksnnglllvvlavaligg..gaayyfkvlkp 143
                 p++ +++++ ++  ++ l++vlava++    g+++++ + k+
  EHT98934.1  21 PSRgKKTKSGSG--TSKLMIVLAVAVLVTfaGGLWFLAHHKK 60 
                 222222222222..4444444444444333145555544443 PP

  == domain 2  score: -10.4 bits;  conditional E-value: 8
     DUF4366  95 eepepekeaepeepeeepekk 115
                 ++p ++ ++++++ +++++++
  EHT98934.1 187 QQPRQQIQEQHTQRQQQQNTQ 207
                 222222222222211111111 PP

>> TRIQK  Triple QxxK/R motif-containing protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0032       7.2      38      79 .]      21      63 ..      11      63 .. 0.78
   2 ?   -3.6   5.3       4.7   1.1e+04       3      30 ..     150     177 ..     148     181 .. 0.80
   3 ?   -3.6   8.6         5   1.1e+04       3      29 ..     176     202 ..     174     212 .. 0.84
   4 ?   -1.0   0.4      0.72   1.6e+03      22      35 ..     224     238 ..     202     245 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
       TRIQK 38 kAeakksasgikevllv.lvailvlllalYalfflnlskeqdv 79
                    kk+ sg    +l+ ++a+ vl+    +l fl   k++dv
  EHT98934.1 21 PSRGKKTKSGSGTSKLMiVLAVAVLVTFAGGLWFLAHHKKEDV 63
                5556888888888888857799999999999***999988775 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.7
       TRIQK   3 kkdasaaklpvdqYRKqiGkQdykknKd 30 
                 ++++ + +  v+qY  q   Q+++++++
  EHT98934.1 150 RQQTLQHQQQVQQYQHQQQVQQFQRQQQ 177
                 5677889999****99998899888766 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5
       TRIQK   3 kkdasaaklpvdqYRKqiGkQdykknK 29 
                 +++ ++++  v+q R+qi +Q+ ++++
  EHT98934.1 176 QQQVQQRQQQVQQPRQQIQEQHTQRQQ 202
                 5788999*************9998875 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.72
       TRIQK  22 k.QdykknKdvlkat 35 
                 k Qd  k+K++ ka 
  EHT98934.1 224 KtQDTAKTKPAEKAA 238
                 449999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5412  (0.301857); expected 358.6 (0.02)
Passed bias filter:                     1169  (0.0652016); expected 358.6 (0.02)
Passed Vit filter:                       353  (0.0196888); expected 17.9 (0.001)
Passed Fwd filter:                        76  (0.00423894); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.16u 0.34s 00:00:01.50 Elapsed: 00:00:00.47
# Mc/sec: 1987.26
//
Query:       EHT98935.1  [L=344]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-43  146.4   0.0    2.6e-42  145.0   0.0    1.7  3  Peripla_BP_3   Periplasmic binding protein-like domain
      2e-29  102.9   0.0    3.1e-29  102.3   0.0    1.2  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    1.2e-18   66.6   2.9    2.6e-18   65.5   2.9    1.6  1  LacI           Bacterial regulatory proteins, lacI family
    5.5e-09   36.0   0.0    5.1e-07   29.5   0.0    2.7  3  Peripla_BP_4   Periplasmic binding protein domain
     0.0031   17.3   0.1     0.0066   16.2   0.1    1.6  1  TetR_N         Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.016   14.6   0.1      0.033   13.6   0.1    1.5  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
      0.045   13.3   0.0       0.16   11.5   0.0    2.0  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.048   13.5   0.0        0.1   12.4   0.0    1.6  1  HTH_10         HTH DNA binding domain
      0.066   13.1   0.1       0.31   10.9   0.1    2.1  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.089   12.9   0.0       0.22   11.6   0.0    1.6  1  HTH_3          Helix-turn-helix
       0.15   12.0   0.5       0.55   10.1   0.0    2.2  2  MarR_2         MarR family


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.2   6.8e+03      30      55 ..      41      66 ..      29      94 .. 0.72
   2 ?   -3.1   0.0       5.2   8.4e+03      23      58 ..      79     114 ..      59     127 .. 0.66
   3 !  145.0   0.0   1.6e-45   2.6e-42       1     166 []     176     337 ..     176     337 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.2
                  HHHHHHHHTTSSS-EEEEE-S-SS-S CS
  Peripla_BP_3 30 ergfrqaleelglplnetvvaaddpa 55
                  ++ ++qa+++ g+ ++    ++++ +
    EHT98935.1 41 RQKVEQAVAAVGYASQSMTRHSRRND 66
                  45556666666666666655555544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.2
                   -HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHH CS
  Peripla_BP_3  23 asasderergfrqaleelglplnetvvaaddpaaaa 58 
                   +++  ++ rg++ a++e+g+ + +  +a++ p+a +
    EHT98935.1  79 DPFFSDIIRGVEVAASEAGYLVLIGDCAHQKPQAWT 114
                   455666777777777888877777777666666555 PP

  == domain 3  score: 145.0 bits;  conditional E-value: 1.6e-45
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   v+hL+elGh+ria+++  g+ +    + r++g+ qal++ g+ +++t +   d++ +++++a     +l  la++P+A++++sD +A+g++++++  
    EHT98935.1 176 VNHLLELGHKRIACLA--GPEDVALCQYRLQGYVQALRRSGISVDPTCIVRGDFTFESGVAAIN---QLmTLAEPPQALFCHSDIMAIGAISQAKKL 267
                   78**************..8888888888**************************9999999865...66566669********************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   glrvPedlsv+gfdd+el++++ PplTtv+qp+ ++Gr+a+ lll  l+g+ +   ++ll  elv+R+St
    EHT98935.1 268 GLRVPEDLSVVGFDDIELSRYCEPPLTTVKQPCFDIGREAVLLLLNELQGKGTRSGSKLLDAELVIRGST 337
                   *********************************************************************8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   1.9e-32   3.1e-29       1     259 [.      67     315 ..      67     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.9e-32
                   -EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   1 tlklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvP 96 
                   t++++l++p+  +Pff d++ g++ aa+e g+ vl+     ++ +a   ++l+++++idg+++ +++  fd     ++  +p + +   +d    +P
    EHT98935.1  67 TQTILLIVPNICDPFFSDIIRGVEVAASEAGYLVLIGDCAHQKPQAwTFLNLILTRQIDGMVLLGAQLPFDVSPDEQRN-LPPMVMAIEFDPEMSLP 162
                   5799****************************776655555555557**********************8876666666.77777777778889*** PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindea 191
                   +v  d+ +a   +  +L++ ghkr ia+l+gpe     ++r qG+ +al+ +G  v    +  g+ + e +  a+n+l+     P+  a+ + +d +
    EHT98935.1 163 TVNIDNLTASFVAVNHLLELGHKR-IACLAGPEDVALCQYRLQGYVQALRRSGISVDPTCIVRGDFTFESGVAAINQLMTLAepPQ--ALFCHSDIM 256
                   ************************.******************************************************9999677..********* PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   a+Ga+  +kk G l+ +e+      svv++d +   + +   ++pl++   p   +Gr+a   +l+  
    EHT98935.1 257 AIGAISQAKKLG-LRVPEDL-----SVVGFDDI---ELSRYCEPPLTTVKQPCFDIGREAVLLLLNEL 315
                   ************.*******.....*******9...8899999******99*9********9999976 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   2.9   1.6e-21   2.6e-18       1      44 [.      11      54 ..      11      56 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.6e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB- CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYi 44
                t+kDVA++AGVS+aTVSr L+n+e+Vs +tr++Ve+a++ ++Y+
  EHT98935.1 11 TMKDVAEKAGVSTATVSRALMNPEKVSSATRQKVEQAVAAVGYA 54
                9******************************************7 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3         1   1.6e+03      68      97 ..       8      37 ..       2      60 .. 0.50
   2 ?    3.2   0.0     0.033        54       3      36 ..      72     104 ..      70     131 .. 0.74
   3 !   29.5   0.0   3.1e-10   5.1e-07      99     257 ..     163     318 ..     149     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
                  HHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4 68 alapalkkakaaGIpVvafdsddapsgerl 97
                  a+a++ + a++aG+   ++ ++ ++ ++++
    EHT98935.1  8 AAATMKDVAEKAGVSTATVSRALMNPEKVS 37
                  444444445555555555555522222222 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.033
                   EEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEEC CS
  Peripla_BP_4   3 vvvkdksnpffsaaregleeaakelgaevtvvgd 36 
                   ++v++  +pffs +  g+e aa e+g+ v + gd
    EHT98935.1  72 LIVPNICDPFFSDIIRGVEVAASEAGYLVLI-GD 104
                   78899999******************97776.44 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 3.1e-10
                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECC.EEESTTTCHHHHHHHHHHHHH.TTTECEEEESSCC CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikiva.evaganwdaekaqqaleallt.anpldgilaandg 193
                    v++dn +a  ++ + l+e      + ++ laG  + +  ++r++g  ++l+  +gi + +  ++ ++ + e +  a+++l+t a+p ++ ++ +d 
    EHT98935.1 163 TVNIDNLTASFVAVNHLLELGH---KRIACLAGPEDVALCQYRLQGYVQALRR-SGISVDPtCIVRGDFTFESGVAAINQLMTlAEPPQALFCHSDI 255
                   6889999999999999999988...56**************************.89999886555889***************99989********* PP

                   HHHCHHHHHHHTTT.TSTEE.EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 194 maegalealeaagl.agkvv.vtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   ma+ga++  ++ gl  ++++ v+g+D  + ++   +    + tv q+ +++g+ av l+++ l+Gk
    EHT98935.1 256 MAIGAISQAKKLGLrVPEDLsVVGFDDIELSRYC-EPPL-T-TVKQPCFDIGREAVLLLLNELQGK 318
                   **************74444458888876666544.3333.4.999999999999999999999997 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   4.1e-06    0.0066      13      35 ..       6      28 ..       3      29 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
                HTTT--HHHHHHHHTSSHHHHHH CS
      TetR_N 13 GydattvreIAkrAGvskgalYr 35
                  +a+t++++A++AGvs +++ r
  EHT98935.1  6 PPAAATMKDVAEKAGVSTATVSR 28
                56899***************965 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     2e-05     0.033      28      48 ..      10      30 ..       8      32 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwril 48
                  +++k+vA+  gvS+ TV r+l
    EHT98935.1 10 ATMKDVAEKAGVSTATVSRAL 30
                  59*****************87 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.16      18      38 ..      10      30 ..       8      32 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
      HTH_24 18 isqreLAerlglSpstvnrrl 38
                 +++++Ae+ g+S +tv+r l
  EHT98935.1 10 ATMKDVAEKAGVSTATVSRAL 30
                69****************987 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.4e-05       0.1      21      46 ..       7      32 ..       5      36 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
      HTH_10 21 PRrvtlkeLAkelGIskstlsehLrk 46
                P  +t+k++A++ G+s +t+s  L +
  EHT98935.1  7 PAAATMKDVAEKAGVSTATVSRALMN 32
                8899*****************99866 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.31      16      36 ..       8      28 ..       3      30 .. 0.89
   2 ?   -1.7   0.0       1.6   2.6e+03       8      19 ..     311     322 ..     310     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
  HTH_AsnC-type 16 aRisyaeLAervGlSestvlr 36
                   a ++++++Ae+ G+S++tv r
     EHT98935.1  8 AAATMKDVAEKAGVSTATVSR 28
                   6799***************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
  HTH_AsnC-type   8 ILeaLqedaRis 19 
                    +L++Lq  + +s
     EHT98935.1 311 LLNELQGKGTRS 322
                    89****988887 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.22      11      28 ..      11      28 ..      11      42 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
                HHHHHHHHHTSSHHHHHH CS
       HTH_3 11 sqeeLAeklGvsrstisr 28
                +++++Aek+Gvs +t+sr
  EHT98935.1 11 TMKDVAEKAGVSTATVSR 28
                789**************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00034      0.55      17      42 ..       5      30 ..       3      32 .. 0.88
   2 ?   -2.1   0.1       2.3   3.8e+03      23      43 ..      43      63 ..      33      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
                TTTSEEEHHHHHHHHTSSHHHHHHHH CS
      MarR_2 17 rpgrdltvgelarrlglsksavsril 42
                 p+   t++++a++ g+s ++vsr+l
  EHT98935.1  5 QPPAAATMKDVAEKAGVSTATVSRAL 30
                566677******************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
                EHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilk 43
                 v + +++ g+  ++++r+ +
  EHT98935.1 43 KVEQAVAAVGYASQSMTRHSR 63
                566778888899999999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2619.45
//
Query:       EHT98936.1  [L=731]
Description: Primosome factor n' (replication factor Y) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-30  103.0   0.0    1.1e-29  102.2   0.0    1.5  1  PriA_3primeBD   3′ DNA-binding domain (3′BD)
    4.1e-20   72.4   0.1    4.2e-19   69.1   0.0    2.7  3  PriA_C          Primosomal protein N C-terminal domain
    8.1e-12   45.3   0.0    1.6e-11   44.3   0.0    1.5  1  DEAD            DEAD/DEAH box helicase
    1.3e-11   44.8   0.0    2.2e-11   44.1   0.0    1.3  1  ResIII          Type III restriction enzyme, res subunit
    8.5e-11   42.2   0.0    5.2e-05   23.6   0.0    2.6  2  Helicase_C      Helicase conserved C-terminal domain
    3.3e-07   30.2  17.0    3.3e-07   30.2  17.0    3.0  3  PriA_CRR        PriA DNA helicase Cys-rich region (CRR) domai
     0.0069   15.3   0.0      0.013   14.5   0.0    1.3  1  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.059   13.1   0.0    1.9  2  AAA_30          AAA domain
      0.051   13.8   0.0       0.96    9.7   0.0    2.6  2  AAA_22          AAA domain
      0.068   13.5   0.0       0.23   11.8   0.0    1.8  2  AAA_19          AAA domain
      0.093   12.7   7.9        0.2   11.7   7.9    1.5  1  zinc-ribbons_6  zinc-ribbons


Domain annotation for each model (and alignments):
>> PriA_3primeBD  3′ DNA-binding domain (3′BD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   6.6e-33   1.1e-29       1      96 []       5     100 ..       5     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 6.6e-33
  PriA_3primeBD   1 eVavdlpldrtfdYrvpeelevkiGsrVlVpfgkrklvGiVvalkeeseveeeklkpieevldeepllteellelaewlaeyylaplgevlkaalP 96 
                    +Va+++pl+r+fdY+ pe +++  G rV+Vpfg+rk++GiVva++++s++++++lk+++ vld e+l++++l+++++w+a+yy++plgevl+ a+P
     EHT98936.1   5 QVALPVPLPRLFDYLPPEGVQPVTGGRVIVPFGNRKMIGIVVAFSDSSDLATSQLKQVLTVLDRESLFPSSLWRILHWAADYYHSPLGEVLSHAIP 100
                    7*********************************************************************************************98 PP

>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.1   1.2e+04      40      55 ..     253     268 ..     229     270 .. 0.71
   2 ?   -1.0   0.0       1.9   3.1e+03      20      54 ..     378     413 ..     363     423 .. 0.69
   3 !   69.1   0.0   2.6e-22   4.2e-19       1      94 []     631     728 ..     631     728 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.1
      PriA_C  40 ilgpapapiakikgry 55 
                  +g +p  ia+ ++r+
  EHT98936.1 253 EIGLTPQTIARFRERF 268
                 4789999999999987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.9
      PriA_C  20 eaaeelaellkealkleeve.ilgpapapiakikgr 54 
                 + a +++  l++ ++l++ +   g apa i k++++
  EHT98936.1 378 KRAGNAKPALQQLIDLKGAQlTGGLAPALIFKMRQH 413
                 455555555666544433333778999999999886 PP

  == domain 3  score: 69.1 bits;  conditional E-value: 2.6e-22
      PriA_C   1 PFsrlalirvsgkdeekveeaaeelaellkealkl.eeveilgpapapiakikgryryqillksksrkalqkllkellekleklk...kvrvsiDvDP 94 
                 P+++ al+r+++ d +++ e++++l+++l+++ ++  ++ ++gp pa  +k++gr+r+q+l++++srk+lq+ll+  l+ + +l+   kv++++DvDP
  EHT98936.1 631 PWTHHALFRAEDMDNHQAAEFLQQLRNMLEASPHNdASMWFMGPLPALQPKRSGRWRWQLLVQHPSRKRLQQLLSSSLPLVTTLPasrKVKWTLDVDP 728
                 99*****************************754445577*****************************************99989988********9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   9.7e-15   1.6e-11       4     173 ..     202     363 ..     199     366 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 9.7e-15
                 HHHHHHHHHTT....CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEE.EEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD   4 Qaeaiplilgg....gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvl.liiggvaardqlskldn 96 
                 Qa a+ +i g+       l+a+ TGsGKT+++l  vl++v      +g++al+++P   L+ qt+ +++++++  +d  vl + ++++++ + + + ++
  EHT98936.1 202 QATAVGAIRGEdehyAAWLLAGITGSGKTEVYLS-VLENV----LARGKQALVLVPEIGLTPQTIARFRERFDApVD--VLhSGLNDSERLSVWLRARR 293
                 55666666533222235579999********875.55566....36899************************6454..33244555555455555555 PP

                 T.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD  97 g.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                 g   i++gt + l+         + +  ++++DE +  + + +++ ++  ++ l+      +++  v++ SAT+  +++
  EHT98936.1 294 GeNAIIIGTRSALFTP-------MARPGVIIIDEEHDSSYK-QQEGWRYQARDLA-VFRAHEEDIPVVMGSATPAlETL 363
                 57************94.......567899**********99.7777777789995.4444446777*******986665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   1.3e-14   2.2e-11       4     152 ..     198     334 ..     173     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1.3e-14
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekd 100
                 l+  Q++a+ +++ +  +++    l++  TG+GKT v++++ e++l  gk  ++l+lvp++ l+ qt+ +f++ ++ +++     +++ ++ +   + +
  EHT98936.1 198 LNTDQATAVGAIRGE--DEHYAAWLLAGITGSGKTEVYLSVLENVLARGK--QALVLVPEIGLTPQTIARFRERFDAPVDVLHSGLNDSERLSvwLRAR 292
                 455555555555522..2566688999********************877..9*************************766433344444333799999 PP

                 ...-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHH CS
      ResIII 101 stnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swre 152
                 + ++ i++ t ++l  ++             r  viiiDE H +++k+   wr 
  EHT98936.1 293 RGENAIIIGTRSALFTPM------------ARPGVIIIDEEHDSSYKQqeGWRY 334
                 ******************............9999***********973454443 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.6e-06     0.014       7      75 ..     238     304 ..     230     306 .. 0.86
   2 !   23.6   0.0   3.2e-08   5.2e-05      56     111 .]     521     588 ..     488     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.6e-06
                 HHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG CS
  Helicase_C   7 lellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdv 75 
                  + l   ++g+++l+ v+ i    + +  ++e+++  v vlh+ l+ +er+ +  + ++ge  ++i t+ 
  EHT98936.1 238 ENVL---ARGKQALVLVPEIGLTPQtIARFRERFDAPVDVLHSGLNDSERLSVWLRARRGENAIIIGTRS 304
                 4445...899***********4433479999************************************975 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 3.2e-08
                 HHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH............HHHHHHHTTSSSTT CS
  Helicase_C  56 eeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv............tsyiqriGRtgRag 111
                 e+ l++  +g  ++L+ t+++++G  +p+v+lV  +d++  +            + y q +GR+gRag
  EHT98936.1 521 EQHLADVHRGGARILVGTQMLAKGHHFPDVTLVSLLDVDGALfsadfraaerfaQLYTQVAGRAGRAG 588
                 456667779999***************************554455667777777************97 PP

>> PriA_CRR  PriA DNA helicase Cys-rich region (CRR) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.056        91      16      24 ..     432     440 ..     429     441 .. 0.85
   2 !   30.2  17.0     2e-10   3.3e-07       1      27 []     444     470 ..     444     470 .. 0.99
   3 ?   -2.5   0.4       3.3   5.3e+03       1       5 [.     475     479 ..     474     481 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.056
    PriA_CRR  16 rLrCHyCgy 24 
                  L CH Cg+
  EHT98936.1 432 ALLCHDCGW 440
                 79*****96 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2e-10
    PriA_CRR   1 CpnCdvsltyHksrnrLrCHyCgyteP 27 
                 C++Cd ++t+H+++++LrCH+C++++P
  EHT98936.1 444 CQRCDRYYTLHQHHRQLRCHHCDSQRP 470
                 **************************9 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
    PriA_CRR   1 CpnCd 5  
                 Cp+C 
  EHT98936.1 475 CPQCG 479
                 88885 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.8e-06     0.013      17      51 ..     218     252 ..     205     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.8e-06
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargdraivlDl 51 
                      l++G tGsGKt++  + l+++ arg++a+vl +
     EHT98936.1 218 AWLLAGITGSGKTEVYLSVLENVLARGKQALVLVP 252
                    45899**************************9855 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-05     0.059       2      96 ..     198     320 ..     197     332 .. 0.67
   2 ?   -3.6   0.0       4.6   7.5e+03     148     181 ..     357     390 ..     353     393 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
      AAA_30   2 lnaeQaaavealltsgdrva..vltGpAGtGKttalkalreaweaag......grviglAptgkaAkvLaeelgieastiakllkrlk........... 81 
                 ln++Qa+av a+ ++++ +a  +l G  G+GKt +  ++ e + a+g       + igl  t +  ++ +e ++++ + +++ l+  +           
  EHT98936.1 198 LNTDQATAVGAIRGEDEHYAawLLAGITGSGKTEVYLSVLENVLARGkqalvlVPEIGL--TPQTIARFRERFDAPVDVLHSGLNDSErlsvwlrarrg 294
                 89***********999887623689********98766655555555233322222233..44444577788888888888777666677776666667 PP

      AAA_30  82 .............grarlepgtllivDE 96 
                                  +++  ++i+DE
  EHT98936.1 295 enaiiigtrsalfT--PMARPGVIIIDE 320
                 77777777765331..344557777777 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.6
      AAA_30 148 taeLtevvRqkeseeraaalalregdaeealeal 181
                 t  L++++  ++ ++r++ l  r g+a+ al++l
  EHT98936.1 357 TPALETLHNVRNGKYRQLDLMKRAGNAKPALQQL 390
                 6677777777777888888888888877777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00059      0.96       9     103 ..     220     324 ..     213     360 .. 0.62
   2 ?    0.7   0.0      0.35   5.7e+02      71     129 ..     606     673 ..     562     679 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00059
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst....sskdllrellralglelkaerlsseellealeqalrarav............ 91 
                 ++ G +G+GKT ++  +le+  ++        ++++v +p+ +    + + +++++   +++ +++  ++se+l   l+    + a             
  EHT98936.1 220 LLAGITGSGKTEVYLSVLENVLAR-------GKQALVLVPEIGltpqTIARFRERFDAPVDVLHSG-LNDSERLSVWLRARRGENAIiigtrsalftpm 310
                 788*****************9754.......33333333333332455888888888888887777.33333333222222222222445556666666 PP

      AAA_22  92 ..ielliiDEaqhl 103
                   ++++iiDE +  
  EHT98936.1 311 arPGVIIIDEEHDS 324
                 67899999997765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
      AAA_22  71 erlsseellealeqalrarav........ielliiDEaqhlrs.eealeeLrsllnl.srkgvqliLvG 129
                 ++l  + +++  +q l +r+         ++l+  +++++  + +e l++Lr++l+   + + ++ ++G
  EHT98936.1 606 QTLLHQGYFAFAQQTLLERQSvflppwthHALFRAEDMDNH-QaAEFLQQLRNMLEAsPHNDASMWFMG 673
                 55555666666667666666678888888888888899997.559999999999998888888888887 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.23      13     117 ..     219     327 ..     207     332 .. 0.78
   2 ?   -2.8   0.0       4.6   7.4e+03      57      93 ..     620     654 ..     615     665 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_19  13 llvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle..........eaeeekklq 101
                  l+ +  G+GKT+v   +++ ++++g++++  +  + +t +   + rer    +a+ + +H+   l+  ++l+ +l + +          +++  +++ 
  EHT98936.1 219 WLLAGITGSGKTEVYLSVLENVLARGKQALVLVPEIGLTPQTIARFRERF---DAPVDVLHSG--LNDSERLSVWLRA-RrgenaiiigtRSALFTPMA 311
                 4566669*******************9999999999**************...9*******66..5555555455555.25788888877555667775 PP

      AAA_19 102 eeellivDEfqdvdel 117
                 +  ++i+DE  d +  
  EHT98936.1 312 RPGVIIIDEEHDSSYK 327
                 6669999999887744 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.6
      AAA_19  57 elrerlaalgaeatTiHrlalldfddlltealellee 93 
                  l er  ++ ++  T H+l + + d ++++a+e+l++
  EHT98936.1 620 TLLERQ-SVFLPPWTHHAL-FRAEDMDNHQAAEFLQQ 654
                 555665.667778899988.44444455567777764 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.9   0.00012       0.2       2      37 ..     443     480 ..     442     486 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                     --SSS-S--E..E-SSEEE-TTT--EEEEEEE-SSS-S CS
  zinc-ribbons_6   2 kCpeCqqele..krgeqyhCeaCqedlkkealCpeCeq 37 
                     +C++C++  +  ++++q++C++C+++      Cp+C++
      EHT98936.1 443 ECQRCDRYYTlhQHHRQLRCHHCDSQRPLPHQCPQCGS 480
                     7*****9877546679********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5197.85
//
Query:       EHT98937.1  [L=71]
Description: LSU ribosomal protein L31p [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-31  105.9   0.3    9.9e-31  105.8   0.3    1.0  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.3   5.5e-35   9.9e-31       1      66 [.       1      64 [.       1      65 [. 0.98

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 5.5e-35
  Ribosomal_L31  1 mKkgiHPeyrevvvkcacgeefltrStlkekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkry 66
                   mK+giHP+y+ v+++c+cg+ + trSt    +e+++dvc k+HPfYtGkq+ v t+Grv++F+kr+
     EHT98937.1  1 MKQGIHPKYEAVTINCTCGNVIHTRST--LTHELNLDVCGKCHPFYTGKQREVATGGRVDRFNKRF 64
                   9**************************..699*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 541.99
//
Query:       EHT98938.1  [L=105]
Description: S-adenosylmethionine-binding DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-59  195.7   0.1    8.7e-59  195.5   0.1    1.0  1  MetJ       Met Apo-repressor, MetJ
  ------ inclusion threshold ------
      0.083   12.5   0.0      0.087   12.5   0.0    1.1  1  SWI2_SNF2  SWI2/SNF2 ATPase
       0.17   11.6   0.0        0.2   11.4   0.0    1.1  1  AphA_like  Putative AphA-like transcriptional regulator


Domain annotation for each model (and alignments):
>> MetJ  Met Apo-repressor, MetJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.1   1.5e-62   8.7e-59       1      97 []       3      99 ..       3      99 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 1.5e-62
        MetJ  1 kwngeyispyaehgkkseqvkkvtvsiplkvlkvltdertrrqvnnlrhatnsellceaflhaftgqplpddedlrkdnedkipkevkelleekgid 97
                +wngeyispyaehgkkseqvkk+tvsipl vlk+ltdertrrqvnnlrhatnsellceaflhaftgqplp+d dlrk+++d+ip+e+k++++e+gid
  EHT98938.1  3 EWNGEYISPYAEHGKKSEQVKKITVSIPLSVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDVDLRKERNDEIPEEAKKIMREMGID 99
                6**********************************************************************************************96 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05     0.087     122     161 ..      34      74 ..       8      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
   SWI2_SNF2 122 iivlvDEaHRsqygelakkl.rkalpnaafigFTGTPilkk 161
                 + +l+DE  R q ++l++    + l +a + +FTG P+ ++
  EHT98938.1  34 LKILTDERTRRQVNNLRHATnSELLCEAFLHAFTGQPLPND 74 
                 5689*********998666515678899999******9864 PP

>> AphA_like  Putative AphA-like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05       0.2     100     138 ..      21      59 ..      13      83 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.3e-05
   AphA_like 100 dlsklviaLklrfLdLlevaerraqidlllelvetelar 138
                 ++ k+++++ l  L++l  ++ r+q+++l +++++el  
  EHT98938.1  21 QVKKITVSIPLSVLKILTDERTRRQVNNLRHATNSELLC 59 
                 5899********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 913.55
//
Query:       EHT98939.1  [L=386]
Description: cystathionine gamma-synthase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.2e-142  473.2   0.0   4.7e-142  473.0   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    2.1e-07   30.5   0.0      3e-07   30.0   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    0.00043   19.3   0.0    0.00066   18.7   0.0    1.2  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.0   0.0  7.9e-146  4.7e-142       2     381 ..       7     380 ..       6     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 473.0 bits;  conditional E-value: 7.9e-146
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP   2 TllvhagqekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeiv 95 
                      T++v++g ++deq+g+v++pi+l+sty+f+       +e ++++YsR+gnptr+v+++++a+Legg+ a+++++Gm+Ai+++ + +lk Gd +v
       EHT98939.1   7 TIAVRSGLNDDEQYGCVVPPIHLSSTYNFH-----DFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLV 95 
                      99****************************.....999******************************************************** PP

                      EESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT- CS
  Cys_Met_Meta_PP  96 vsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklga 189
                      + +d+Ygg++rl++++ k+   +vkfvd+ d ++l++a++e+ +lv++E+p+npll+vvDi++i+++a+k+g++ vvDntf+sp lq+pl+lga
       EHT98939.1  96 APHDCYGGSYRLFDSLSKRGAYRVKFVDQGDSAALQAALDEKPQLVLVESPSNPLLRVVDIAAICDAARKVGAVSVVDNTFMSPTLQNPLALGA 189
                      ********************************************************************************************** PP

                      SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTT CS
  Cys_Met_Meta_PP 190 DivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglps 283
                      D+v+hS+TKyl+GhsdvvaG++++k+ +++++ l+++ n++G + s+fd++lllrG++TL+ R+ ++q+nAl++  +L+++p v+k+y+p+lp+
       EHT98939.1 190 DLVIHSCTKYLNGHSDVVAGAVIAKD-PQVATDLAWWANNIGVTGSAFDSYLLLRGMRTLGPRMAAAQRNALEIVAYLKQQPLVKKLYHPSLPE 282
                      **************************.******************************************************************* PP

                      STTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHH CS
  Cys_Met_Meta_PP 284 hpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDl 377
                      + +he+a++q++g+g++lsFel+++e++ ++f+++l+lf+laeslGgvesli++ a+mtha +++e+r+aag++++l+R+svGiEd +DliaDl
       EHT98939.1 283 NAGHEVAARQQRGFGAMLSFELDGDEARLRRFLKALELFTLAESLGGVESLISHTATMTHAGMSAEARAAAGISETLLRISVGIEDHEDLIADL 376
                      ********************************************************************************************** PP

                      HHHH CS
  Cys_Met_Meta_PP 378 kqal 381
                      ++a+
       EHT98939.1 377 DNAF 380
                      ***9 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     5e-11     3e-07      49     197 ..      57     183 ..      43     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5e-11
                    HHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHH.HTTSEEEEEEBEETTTTEE-HHHHHHHHTTHH CS
  Aminotran_1_2  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilr.lsggevvryplyseedfhldlealeealkeap 143
                    ++ ala++ g          +av++ +G +a+  + + +lk  pgd  ++p   y+   + +  ls+   +r+++      + d  al++al+e  
     EHT98939.1  57 VQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDsLSKRGAYRVKFV----DQGDSAALQAALDE-- 136
                    6678888888........666**********9999999999..*********999988887752666668888866....599***********.. PP

                    CTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSS CS
  Aminotran_1_2 144 egnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgs 197
                        k++++lvesp+NP   v + + +++    a+k +++ +vD ++    +++
     EHT98939.1 137 ----KPQLVLVESPSNPLLRVVDIAAICDA---ARKVGAVSVVDNTFMSPTLQN 183
                    ....99************************...***********9998666555 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.1e-07   0.00066      68     202 ..      73     199 ..      46     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-07
                  SSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHH CS
  Aminotran_5  68 sGtte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigkl 164
                   +t+  ai lv   +   lkpgd  v  +  + +       l+kr  ++vk++        d  +l+++l+ek++lv +   sn +  + ++++i+++
   EHT98939.1  73 TNTGMsAIHLVTTVF---LKPGDLLVAPHDCYGGSYRLFDSLSKRGAYRVKFVDQ-----GDSAALQAALDEKPQLVLVESPSNPLLRVVDIAAICDA 162
                  455555899999999...9999999999999999999999999999999988876.....355688899***************************** PP

                  HHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTT CS
  Aminotran_5 165 akkkgalvlvDaaqavghipidvkklgvDflafsghKl 202
                  a+k+ga+ +vD + + +  +  + +lg+D++  s  K+
   EHT98939.1 163 ARKVGAVSVVDNTFMSPTLQNPL-ALGADLVIHSCTKY 199
                  ***********999999888665.79999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3132.60
//
Query:       EHT98940.1  [L=810]
Description: aspartokinase/homoserine dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-43  148.2   0.0    4.4e-43  147.6   0.0    1.3  1  AA_kinase      Amino acid kinase family
    1.5e-42  145.5   0.0    2.4e-42  144.8   0.0    1.3  1  Homoserine_dh  Homoserine dehydrogenase
    3.1e-25   89.1   0.0    9.5e-25   87.5   0.0    1.9  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   7.4e-47   4.4e-43       2     238 ..      13     285 ..      12     288 .. 0.89

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 7.4e-47
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC...........E..HHHHHHHHH.............. CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaa.......glrstleeagevatr.............. 79 
                 r  +K+GGssl+d+ +  ++r+a + a++ ++  ++ vV+++gs+t++l++   +ls++   +                     r              
  EHT98940.1  13 RQLHKFGGSSLADARC--YQRVASIMADY-SQPGDMMVVSAAGSTTNQLISW-LKLSQSDRLSahqvqqtL-------------Rryqselisallpae 94 
                 7889************..***********.888899****************.666666655322333331.............023445555566667 PP

                 .............................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE....HHHTTTCEEECCHHHHHHHT..T-EEEEES CS
   AA_kinase  80 .............................dalaslgerlvaallaaglpavglsaaaldateagr..degsdgnvesvdaeaieellea..gvvpvltg 145
                                              ++++ +ge ++a+l++a l+++ l+a++lda+++ r  +  +++++e  +   +++ll++   + +v+tg
  EHT98940.1  95 iaeplisafirdleklaglldgtvtdavyAEVVGHGEVWSARLMSAVLNQHDLQACWLDARDFLRaeRAAQPQVDEGKSWPLLQTLLAQhpHKRIVVTG 193
                 88888888999999999999999999999**********************************************************55436******* PP

                 EEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEE CS
   AA_kinase 146 figldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvv 238
                 fi++++ ge   lgr++sD++a+ ++++ g+ ++ i++dV GVy+adp+kv+da llp ++ dea e    la+  + v+h ++l+++ +++i++ 
  EHT98940.1 194 FICANDAGEtvlLGRNGSDYSATQIGALAGVGRVTIWSDVAGVYSADPRKVSDACLLPLLRLDEASE----LARLAAPVLHTRTLQPVSGSDIDLQ 285
                 *******************************************************************....*******************999876 PP

>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   4.1e-46   2.4e-42       1     172 [.     609     803 ..     609     803 .. 0.94

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 4.1e-46
                    --HHHH.HHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--ST.. CS
  Homoserine_dh   1 Piiktl.keilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledvevegis.. 93 
                    Pi +t+ ++  sgd+i +i+Gi++gtl++++ +++  +  f+e++ +a ++G++e+Dp+ D++G D++rKl+ilar+a g+++e+++v+ve++   
     EHT98940.1 609 PINHTVrDLRESGDTILSISGIFSGTLSWLFLQFDG-SVPFTELVDQAWQQGLTEPDPRVDLSGEDVMRKLVILAREA-GYNIEPDQVRVESLVpq 702
                    89999999999************************6.566**************************************.**************999 PP

                    ..............TS-HHH...HHHHHCTTEEEEEEEEE...CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEE..EEEEES-SSHHHHHHH CS
  Homoserine_dh  94 ..............kltaed...ikeakeegkvlklvasa...vearVkpelvpkshplasvkgsenavlvetdrlge..lviqGpgaGaepTAsa 167
                                  +l+++    +++a+e+g vl++va+     +arV++e+v ++hpla +   +n+++++++ + +  lvi+GpgaG+++TA  
     EHT98940.1 703 ncdesvdhffengdELNEQMlqrFEAAQEMGLVLRYVARFdanGKARVGVEAVRPEHPLAALLPCDNVFAIDSRWYRDnpLVIRGPGAGRDVTAGV 798
                    999999998888886666646669***************765549********************************99***************** PP

                    HHHHH CS
  Homoserine_dh 168 vlsDl 172
                    + sD+
     EHT98940.1 799 IQSDI 803
                    99997 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   1.6e-28   9.5e-25       1     117 []     466     601 ..     466     601 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.6e-28
                    --SHHHHHHHHHHHH---S......SEEEEEEEEESS.EEE-TT......HHHHHT--CB---HHHHHHHH.....S-EEEEE-S--HHHHTTHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse......ielelvavadrd.sllskd......rkallasealtldlddliahl.....dpdvvVEcasseavaelvlk 78 
                    G G+iGs++le+++r+q++      +e+ l++v+d++ sll++d      ++a++ +ea+t d ++l+ ++     d  vv+++++s+ +a+++l+
     EHT98940.1 466 GKGNIGSRWLELFAREQETlsartgFEFVLAGVVDSQrSLLNYDgldasrALAFFDDEAETRDEESLFLWMrahpyDDLVVLDVTASKPLAQQYLD 561
                    89************************************************9******************99***99999***************** PP

                    HHHTTEEEE-S--CGGG.-HHHHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  79 aLkagkdvvtankgala.dealyeeLreaaeangakiyve 117
                    + ++g++v+ ank a a d ++++e+r+a+e++g++++++
     EHT98940.1 562 FASHGFHVISANKIAGAsDTQTWREIRDAFEKTGRHWLYN 601
                    *************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5471.94
//
Query:       EHT98941.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-98  327.2   4.5    3.2e-97  325.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.9e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.4   0.0  4.1e-100   3.2e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98941.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.4 bits;  conditional E-value: 4.1e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98941.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98941.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT98941.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT98941.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98941.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98941.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98941.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98941.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98941.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98941.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT98941.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98941.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT98941.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT98941.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT98941.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98941.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98941.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98941.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT98941.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98941.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98941.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98941.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98941.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98941.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98941.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98941.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98941.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98941.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98941.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT98941.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT98941.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT98941.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT98941.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98941.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98941.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1457  (0.081265); expected 358.6 (0.02)
Passed bias filter:                     1029  (0.0573931); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 3694.52
//
Query:       EHT98942.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98942.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 869.85
//
Query:       EHT98943.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98943.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98943.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98943.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98943.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 893.72
//
Query:       EHT98944.1  [L=205]
Description: phosphoenolpyruvate carboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-81  275.2   0.1    1.1e-81  275.1   0.1    1.0  1  PEPcase   Phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> PEPcase  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.1   0.1   6.3e-86   1.1e-81     587     795 .]       2     205 .]       1     205 [] 0.98

  Alignments for each domain:
  == domain 1  score: 275.1 bits;  conditional E-value: 6.3e-86
                 HHHHHHS-HHHHHHSS-SSS---------GGSS-HHHHHHHHHHTT--GGGTTTHHHHHHHH..HTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHH--H CS
     PEPcase 587 eyFreaTPieeiskLnigSRPakRkkkkglesLRAIPWvFsWtqsRlllpaWyGvgtalkevlekeeeklelLremykkwpffrtliskvemvlaKadl 685
                 +yFr+aTP++e++kL++gSRPakR+++ g+esLRAIPW+F+Wtq+Rl+lpaW+G+g+al+++    +++ ++L++m+++wpff+t + ++emv++Kadl
  EHT98944.1   2 PYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQQA--MLAGHQDQLEAMCRDWPFFSTRLGMLEMVFSKADL 98 
                 7************************************************************7..778899***************************** PP

                 HHHHHHHHHHS-GG.GHHHHHHHHHHHHHHHHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TT----HHHHHHHHHHH CS
     PEPcase 686 eiakeYvqllvdkelrerlfeeireelertvelvleitgqkelldknpvlqrsvelRnayidPlnllQvelLkrlRqaeeekseeeeeellrdalllti 784
                 ++a++Y+q+lvdk+ ++ l++++r++l+ ++++vl+i+++++l++++p++++s++lRn y+dPln+lQ+elL+r R++e+  + ee ++++++al++ti
  EHT98944.1  99 WLAEYYDQRLVDKS-LWPLGKQLRDQLDADIKAVLTIANDSHLMADQPWIAESIALRNVYTDPLNVLQAELLHRSRAQEA--RGEEPDARVEQALMVTI 194
                 *************9.888************************************************************99..79*************** PP

                 HHHHHHH---- CS
     PEPcase 785 nGiaaGlrntG 795
                 +G+aaG+rntG
  EHT98944.1 195 AGVAAGMRNTG 205
                 **********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1498.43
//
Query:       EHT98945.1  [L=283]
Description: glutamate racemase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-25   90.4   0.0    1.9e-25   90.0   0.0    1.1  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.1e-29   1.9e-25       3     223 ..      26     235 ..      24     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.1e-29
                   EC.SCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CC.S-TCHHHHHCH.T..THHHHHHHHHHHHC.TTESEEEE--CHHHHH.HHHHHHH-SSEE CS
  Asp_Glu_race   3 gm.gpeatlsvlrklveatpaesdqehlplivlndsa.ipdrteaieeesgddpvlklleaakkLek.agadaiviaCnTahav.adelqkkikiPv 95 
                   ++ +++++lsv+ ++++ +p+        +++  d+a +p + e++    ++ +v++  +++++  + + +++++iaCnTa++v +++l++   +Pv
    EHT98945.1  26 VFdSGVGGLSVYDEVRQLLPDLH------YLYAFDNAgFP-YGEKT----ETFIVERVVAMVDAITRrHPISLVIIACNTASTVtLPALRERFAFPV 111
                   7889*******************......99999999788.66666....344688899999888876999**********877257788******* PP

                   EECHHHHHHHHHH.HSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHHTT-TTSHHHHHHHHHHHHHHTTT-SEEEE-S CS
  Asp_Glu_race  96 lgiveataealka.tgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelkaGevteearrailkllerlaergadaviLGC 191
                   +g+v ++++ +++ t+++ vglL+Tr+t+     ++ +++ +  + +++    ++ v ++ +++l  ++v  +  r+i++   r+  ++ d+v+LGC
    EHT98945.1 112 VGVV-PAIKPAARlTRNGVVGLLATRATVRRSYTHDLVSQ-FAKTCKIEMLGSAELV-ELAEAKLHGDKVSLDDVRRIVQPWLRM-TEPPDTVVLGC 204
                   **55.556666666***************99999888887.5644444444444444.344444445558888555555555545.899******** PP

                   TTHHHHHHHHHHCC-TT.SEEEEHHHHHHHHH CS
  Asp_Glu_race 192 Telplllekaealekeksvpvidptdilaret 223
                   T++pll ++++ + +e + ++id+++++ar t
    EHT98945.1 205 THFPLLRDELQHVLPE-GTRLIDSGAAIARRT 235
                   **********999997.7***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2091.05
//
Query:       EHT98946.1  [L=628]
Description: outer membrane vitamin B12 receptor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-46  159.5  44.7    4.1e-46  158.8  44.7    1.3  1  TonB_dep_Rec  TonB dependent receptor
    1.7e-27   96.1   0.4    5.2e-27   94.5   0.4    1.9  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8  44.7   4.6e-50   4.1e-46      23     470 .]     195     627 ..     154     627 .. 0.67

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 4.6e-50
                   EEETTTTEEEEEEEEEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEE.................... CS
  TonB_dep_Rec  23 rytdggdlgsalsrgylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYs.stdgdsdynnsglgg.................... 98 
                   +y++++ ++ ++++      + + +++ ++++nk + +g++++++d   + + +r g++Y+ +td d ++ +    g                    
    EHT98946.1 195 SYQATNGYNIQPDS------TSPADRDRDGWRNKAFWAGVEHKFNDM--FSGFFR-GYGYAaNTDYDAGFLG----Gsdeqqiynhafdtglrftkg 278
                   22222222211111......123333344555777777777776666..333555.4445522222222222....222235555555554555544 PP

                   ...............EEEEEEEECEEE........EEEEEEEEEEEEEEEE.....EE.EEEEEEEEEEEEEEEECCBEESCCTCCSEEEEEEEEEE CS
  TonB_dep_Rec  99 ...............grsynrdndyyg........lgnvlaaeldlngdlw.....fG.snladgldyrklsddgydaydplnpsgdasdsvdrdsy 166
                                  +       +y+g        ++ +   + +l+   w     +G  + ++g+d++  ++  ++    + ++++ +d++++d++
    EHT98946.1 279 dyssqlvasyqkykiY-------NYVGaegryadsNTLDDMDQRNLQ---WgnafaVGyGTVSTGIDWQ--RQALSSVGQLFSGQPRETDRYKQDNT 363
                   4333332222222220.......222221111112222222222222...233345556677778****..55234445555555999********* PP

                   EEEEEEEEEEETTEEEEEEEEEEEETTCSSSS...EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECSTT--- CS
  TonB_dep_Rec 167 glyaqdnikltdrltltlGlRydhysvfgkdlragafsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngnpdLkP 263
                   g+y+  + +l + +tl++++R d  +++g  +            +++ ++++ + ++ +   sy++gf+aP+lg+ly+     +  ++++ npdL+P
    EHT98946.1 364 GAYLTTQQQL-GTVTLEGAVRGDDNQDYGRHG------------TWQTAAGWEFVPGYKASLSYGTGFQAPTLGQLYG-----QKHFGISANPDLQP 442
                   **********.***********8888884444............**********************************.....57888888****** PP

                   EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEE...EEEEEEEEEEEEECECEEECT CS
  TonB_dep_Rec 264 EtsknyelGlkldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWg...lglsgggytYydagddsdadd 357
                   E+sk++e+ l+   +  n+ la++r++++n+i++ +d+ ++       y+N   ++ikG+E+++  +    ++   l+   + + Y+da+ d    +
    EHT98946.1 443 EKSKQWEAALEGLSGPVNWRLAAYRNHVTNLIDYASDPVTFQ----GGYFNQKAVTIKGIEATA--D----FDtsfLHHQIT-LGYLDARRD----S 524
                   ***********7778888**********************99....777799999*******55..5....66556777777.99*999989....8 PP

                   TTTSSTTEESEEEE..EEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEE....EE--EEEEEEEEEEEESSSEEEEEEEESTTETCSCEEE CS
  TonB_dep_Rec 358 ggnplpnvPkhtan..lgltYkfpaggWgaglllagarYvavggrrygdaantfr....rvpgYtlldlslgYklpknltlslgvnNLfdkryyass 448
                   +++ l++ ++++ +  lg+t       + a++   ++ Y + g+r++++++ +++    r+p+Y ++dl ++Y+++++lt+++ + NLfdk      
    EHT98946.1 525 DDEVLARRSRQQMKyqLGVTV------YKADI---DVIYQYFGKRYDNNTS-QYTseqrRLPAYSTVDLAVSYPVTSHLTVRGRIANLFDKD----- 606
                   888888888888887788773......56555...7767667884444444.3333577*******************************54..... PP

                   STT.TTTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 449 gyy.glggypgpgRtfrlglryk 470
                     y + +gy+ pgR ++l+ +y+
    EHT98946.1 607 --YeTAYGYQTPGREYYLNGSYS 627
                   ..4459999**********9996 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.4   5.8e-31   5.2e-27       3     108 .]      44     150 ..      42     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 5.8e-31
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC.CCCSCTCGCSSBGGGEEEEEEEESSCHCTT CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian.ggsgagdlssidpedierievlkGpasaly 100
                 +++ +s+svvt+++i+  +a++l d+l+++pgv+++++gg g+++s+++RG +++++l+lvDGvp a  g  ga d++ i++++i+r+e ++Gp s+ y
  EHT98946.1  44 SSVLASTSVVTRDEIDLWQAKNLVDVLRRLPGVDIAQNGGIGQSASMFVRGAEARQTLILVDGVPFARpGITGAADFNLIPISLIQRVEFIRGPRSSVY 142
                 57789**************************************************************98889999************************ PP

                 SSTGSSEE CS
        Plug 101 GsdaigGv 108
                 G+daigGv
  EHT98946.1 143 GADAIGGV 150
                 *******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4512.26
//
Query:       EHT98947.1  [L=367]
Description: tRNA (uracil-5-)-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-189  628.4   0.9   3.5e-189  628.2   0.9    1.0  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    7.8e-06   26.5   0.0    5.1e-05   23.9   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
    0.00031   20.4   0.0    0.00051   19.7   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00037   20.0   0.1    0.00067   19.2   0.1    1.4  1  Methyltransf_4   Putative methyltransferase
    0.00043   19.9   0.0     0.0013   18.4   0.0    1.7  2  MTS              Methyltransferase small domain
     0.0011   19.6   0.0     0.0031   18.1   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
     0.0052   16.2   0.1     0.0094   15.4   0.1    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0052   16.6   0.0      0.014   15.2   0.0    1.6  1  Methyltransf_31  Methyltransferase domain
     0.0056   16.4   0.0     0.0092   15.8   0.0    1.3  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
      0.049   13.2   0.7      0.085   12.5   0.2    1.6  2  DUF3164          Protein of unknown function (DUF3164)


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  628.2   0.9  1.9e-192  3.5e-189       1     357 []      10     366 ..      10     366 .. 1.00

  Alignments for each domain:
  == domain 1  score: 628.2 bits;  conditional E-value: 1.9e-192
  tRNA_U5-meth_tr   1 eyeaqleekksrlkkllaefeapelevfespeehyrlraefrlwheeddlyyimfdqktkkkirvdefdaaselinelmkallaalkqdeklre 94 
                      +y+aql+ek+srl++++++f+ap++evf+sp +hyr+raefr+wh++dd+y+i+fdq+tk++irvd+f+aas lin++m+++ aa+++++ lr+
       EHT98947.1  10 QYDAQLAEKVSRLETMMTPFAAPAVEVFRSPVSHYRMRAEFRIWHDGDDIYHIIFDQETKQRIRVDQFPAASALINQMMPKMTAAIRDNRILRH 103
                      69******************************************************************************************** PP

  tRNA_U5-meth_tr  95 klfqvdflstlsgellvsllyhkklddewkeaaealkdkleaqeldvnligrarkkkivldkdyveeklevadrelvyrqvensftqPnaavne 188
                      klfq+d+lstls+++++sllyh+kld+ew++aa+ l+d+l+a+++dv+ligra+k+ki+ld+dyvee+l+va++e++yrqvensftqPnaa+n+
       EHT98947.1 104 KLFQLDYLSTLSNQIVISLLYHRKLDEEWQQAATTLRDQLRAEGVDVQLIGRATKTKICLDRDYVEERLPVAGKEMIYRQVENSFTQPNAAMNI 197
                      ********************************************************************************************** PP

  tRNA_U5-meth_tr 189 kmleWalevtqeskgdllelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlkgidlksy 282
                      +mleWal+vt  s+gdllelycGnGnfslalarnf++vlateiak+sv++aqynia n+idnvqiir++aee+t+a++++r+f+rl+gidlksy
       EHT98947.1 198 HMLEWALDVTTGSRGDLLELYCGNGNFSLALARNFRRVLATEIAKPSVASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLKSY 291
                      ********************************************************************************************** PP

  tRNA_U5-meth_tr 283 afetifvdPPraGldketvklvkkyerilyiscnPetlkenleelsethrverlalfdqfpythhlesGvllekk 357
                      ++etifvdPPr+Gld+etv +v++y  ilyiscnP+tl++nl el +th v+rlalfdqfpythh+e+Gvll++k
       EHT98947.1 292 DCETIFVDPPRSGLDEETVRMVQAYRTILYISCNPQTLCDNLLELAQTHDVTRLALFDQFPYTHHMECGVLLTRK 366
                      ************************************************************************986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   2.3e+03      64      97 .]     115     147 ..      66     147 .. 0.64
   2 !   23.9   0.0   2.8e-08   5.1e-05       2      61 ..     215     273 ..     214     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
                      TEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  64 sfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      s  +v+s   +h   de++++a   +++ L+ +G
       EHT98947.1 115 SNQIVIS-LLYHRKLDEEWQQAATTLRDQLRAEG 147
                      3445666.34444556889999988888888776 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.8e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfe 61 
                      L+l cG+G+++lala+++   +v++++i++  ++ a+ +++ +++ nv+++++ ae++ ++
       EHT98947.1 215 LELYCGNGNFSLALARNF--RRVLATEIAKPSVASAQYNIAVNQIdNVQIIRMAAEEFTQA 273
                      8999*************9..9*******************99999**********998765 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.8e-07   0.00051       4      85 ..     214     306 ..     211     316 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.8e-07
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgv.sdkitlvlgdvfe..........llaklklekikvdlvflSpPwGGps 85 
                      +l l++G G  + ++a++f++v a ei +  +a aq N  v ++ + +i  + ++ f+           l+ + l++   + +f+ pP  G +
       EHT98947.1 214 LLELYCGNGNFSLALARNFRRVLATEIAKPSVASAQYNIAVNQIdNVQIIRMAAEEFTqamngvrsfnRLEGIDLKSYDCETIFVDPPRSGLD 306
                      6899*************************************98833344444444444799999988888888888888889******99875 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.7e-07   0.00067       5      67 ..     214     273 ..     210     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.7e-07
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHC CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllel 67 
                     +le+ cG+G+f +alA ++    +l+ Ei +++va +  +i+ +++ N++i+r  a ++ +++
      EHT98947.1 214 LLELYCGNGNFSLALARNF--RRVLATEIAKPSVASAQYNIAVNQIDNVQIIRMAAEEF-TQA 273
                     68999***********998..5789*****************************99544.433 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   4.7e+03      48      85 ..      14      51 ..      13      58 .. 0.79
   2 !   18.4   0.0     7e-07    0.0013      31      87 ..     210     265 ..     195     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
                HHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEE CS
         MTS 48 alakespeaevtlvdvdarAlesakenleanklevevv 85
                +la++ +++e  ++   a A+e+ +  +++ ++++e++
  EHT98947.1 14 QLAEKVSRLETMMTPFAAPAVEVFRSPVSHYRMRAEFR 51
                67888888999999999999999999998888887664 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 7e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE- CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvas 87 
                  +g++l l cG+G  ++ala++  +  v ++++ + +++sa+ n++ n+++ v+++  
  EHT98947.1 210 SRGDLLELYCGNGNFSLALARNFRR--VLATEIAKPSVASAQYNIAVNQIDnVQIIRM 265
                 678899***************9888..9**********************98665543 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.4   1.3e+04      65      91 ..     119     146 ..      85     148 .. 0.59
   2 !   18.1   0.0   1.7e-06    0.0031       1      55 [.     215     270 ..     215     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.4
                      EEEES-CCC-.CCHHHHHHHHHHHEEEE CS
  Methyltransf_11  65 vvssevlhhv.edpekalkeiaRvLkpg 91 
                      v+s      + e++++a   ++  L+ +
       EHT98947.1 119 VISLLYHRKLdEEWQQAATTLRDQLRAE 146
                      3333333334566666666666666655 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.7e-06
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaekl 55 
                      L++ cG+G ++ ala++++rv++++++k  ++ a+ ++  +++ +v+++++ ae++
       EHT98947.1 215 LELYCGNGNFSLALARNFRRVLATEIAKPSVASAQYNIAVNQIdNVQIIRMAAEEF 270
                      5666**********************************999999999999999974 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   5.2e-06    0.0094     157     221 ..     206     269 ..     189     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.2e-06
        PrmA 157 klvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseel 221
                  +  ++  +l + +G G  ++a a+ + ++v+a+ i + +v +a+ N+++N++++ ++ + +++e 
  EHT98947.1 206 VTTGSRGDLLELYCGNGNFSLALAR-NFRRVLATEIAKPSVASAQYNIAVNQIDNvQI-IRMAAEE 269
                 2233444899999********9887.899*************************9666.5444443 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.6e-06     0.014       6      69 ..     213     273 ..     209     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.6e-06
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl 69 
                       +l+l CG+G+++++la++ +    v   +i + ++ +A+ n + +++dnv+  +  +ee+ ++
       EHT98947.1 213 DLLELYCGNGNFSLALARNFRR---VLATEIAKPSVASAQYNIAVNQIDNVQIIRMAAEEFTQA 273
                      579999***********87765...***************************999888886654 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.1e-06    0.0092     105     165 ..     215     272 ..     207     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.1e-06
                 EETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG--- CS
      Met_10 105 vdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir 165
                 ++++ G G f++++a+  + +rvla ++   sv   + ni+ N++++ v+ i + ++e+++
  EHT98947.1 215 LELYCGNGNFSLALAR--NFRRVLATEIAKPSVASAQYNIAVNQIDN-VQIIRMAAEEFTQ 272
                 67899***********..99*************************87.5689999999975 PP

>> DUF3164  Protein of unknown function (DUF3164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   4.7e-05     0.085      89     166 ..      69     144 ..      57     153 .. 0.86
   2 ?   -3.4   0.0       3.4   6.2e+03     136     159 ..     252     275 ..     244     280 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
     DUF3164  89 qeriefderlqaAKelideclkewsegadeeikalvedaFqvdkeGkintkriLsLrrldiedekWkkAmeaisdsvq 166
                 ++ri+ d +  aA +li++++ + +   +++ + l ++ Fq d   +++++ ++sL      de+W++A + ++d ++
  EHT98947.1  69 KQRIRVD-QFPAASALINQMMPKMTAAIRDN-RILRHKLFQLDYLSTLSNQIVISLLYHRKLDEEWQQAATTLRDQLR 144
                 5555555.478999*******9999877776.9999***********************************9999876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.4
     DUF3164 136 intkriLsLrrldiedekWkkAme 159
                 i +++i  ++ + +  e++++Am+
  EHT98947.1 252 IAVNQIDNVQIIRMAAEEFTQAMN 275
                 444555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2718.80
//
Query:       EHT98948.1  [L=117]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-49  165.8   0.5    3.3e-49  165.6   0.5    1.0  1  DUF1422        Protein of unknown function (DUF1422)
  ------ inclusion threshold ------
      0.011   15.6   3.9      0.013   15.3   3.9    1.0  1  Bax1-I         Inhibitor of apoptosis-promoting Bax1
      0.036   12.9   6.7      0.042   12.7   6.7    1.0  1  AA_permease_2  Amino acid permease
       0.49   10.5   5.3       0.78    9.9   0.1    2.8  3  CcmD           Heme exporter protein D (CcmD)


Domain annotation for each model (and alignments):
>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   0.5   7.3e-53   3.3e-49       4     111 ..       6     113 ..       3     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 7.3e-53
     DUF1422   4 kaekktllLaliaGlslngtlsalfsslvpfsifplialvlavyclyqrYlnksleeglPllalacfllGvlgysalvraeyPeiGsnflsvvllvvlv 102
                 +++k+t+lLa+i+Gl++ng++s+lfs+ vpfsifplial la++cl+qrYlnks+++g+P la+a+fllG+l+ysalvraeyP+iGsnf++++l+v lv
  EHT98948.1   6 SRDKGTMLLAFITGLAMNGSFSVLFSAFVPFSIFPLIALGLAAWCLHQRYLNKSMPDGVPGLAAAFFLLGILVYSALVRAEYPDIGSNFIPTILMVGLV 104
                 689************************************************************************************************ PP

     DUF1422 103 lwiglklki 111
                 +wi+l+ k 
  EHT98948.1 105 FWIALRYKR 113
                 ****99876 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   3.9   2.9e-06     0.013      15     120 ..      12     114 ..      10     117 .] 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-06
      Bax1-I  15 llltalvaavvlsspaqlflslhivlflvvilaplalv.flslsaarlkkkssalalallllftlleGlslspillvytgaiilqaflltaaifgglsl 112
                 +ll+++++++++ s   ++l   +v f ++ l+ l+l  + +l +++l+ ks +  ++ l +  +l G+++ + l+ +    i + f+ t +++g +  
  EHT98948.1  12 MLLAFITGLAMNGSF--SVLFSAFVPFSIFPLIALGLAaW-CLHQRYLN-KSMPDGVPGLAAAFFLLGILVYSALVRAEYPDIGSNFIPTILMVGLVFW 106
                 444445555444444..44444466777777778888744.43444444.454446999999999**************99999999999999999999 PP

      Bax1-I 113 yalttkrd 120
                 +al  kr+
  EHT98948.1 107 IALRYKRN 114
                 99988876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   6.7   9.3e-06     0.042     332     424 ..      11     103 ..      10     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.3e-06
  AA_permease_2 332 slillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkrpgkilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    +++l++++ la + ++++l+s+++ ++i++ ++l ++a+ l  +  ++  p  ++  + ++++l +l++ + +  + p+++s++i ti+++++
     EHT98948.1  11 TMLLAFITGLAMNGSFSVLFSAFVPFSIFPLIALGLAAWCLHQRYLNKSMPDGVPGLAAAFFLLGILVYSALVRAEYPDIGSNFIPTILMVGL 103
                    56777788888899****************************9999988888887666777777788888888899*********99666554 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.29   1.3e+03      18      31 ..      41      54 ..      36      58 .. 0.51
   2 ?    1.6   0.5     0.069   3.1e+02      12      27 ..      68      83 ..      67      86 .. 0.75
   3 ?    9.9   0.1   0.00018      0.78      16      34 ..      98     116 ..      95     117 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
        CcmD 18 lagLilwslrdrrr 31
                l++L l+ +  ++r
  EHT98948.1 41 LIALGLAAWCLHQR 54
                44444444444444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.069
        CcmD 12 gitllvlagLilwslr 27
                ++++++l++L+   l+
  EHT98948.1 68 AAAFFLLGILVYSALV 83
                6788889988877665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00018
        CcmD  16 lvlagLilwslrdrrrllr 34 
                 ++++gL++w+ ++++r ++
  EHT98948.1  98 ILMVGLVFWIALRYKRNRN 116
                 79*************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 875.45
//
Query:       EHT98949.1  [L=215]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-09   34.9   0.7    2.5e-08   33.6   0.1    2.1  2  TetR_N     Bacterial regulatory proteins, tetR family
     0.0039   17.5   0.3        1.5    9.2   0.0    3.1  3  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.31   10.9   0.0    1.5  2  YlaC       Inner membrane protein YlaC


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   4.1e-12   2.5e-08       3      43 ..      17      58 ..      15      60 .. 0.84
   2 ?   -2.8   0.0      0.97   5.8e+03      28      36 ..     190     198 ..     186     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.1e-12
                HHHH.HHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHH CS
      TetR_N  3 daAr.elfaerGydattvreIAkrAGvskgalYryFpsKeeL 43
                +aA  +l aer ++++++re+A++AG+++ ++Yr+F++ +eL
  EHT98949.1 17 EAAFsQLSAERSFASLSLREVAREAGIAPTSFYRHFKDVDEL 58
                555415668***************************986665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.97
                 SSHHHHHHH CS
      TetR_N  28 vskgalYry 36 
                 ++kga Y+y
  EHT98949.1 190 IAKGAYYWY 198
                 456666666 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00025       1.5      23      47 ..      31      55 ..      21      82 .. 0.77
   2 ?   -1.3   0.0      0.47   2.8e+03      50      69 ..     116     134 ..     101     140 .. 0.54
   3 !    4.8   0.0    0.0057        34       3      26 ..     145     168 ..     143     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00025
   HTH_Tnp_1 23 gksvsevArrhgvspnqLykWrrqy 47
                + s +evAr+ g+ p ++y+  + +
  EHT98949.1 31 SLSLREVAREAGIAPTSFYRHFKDV 55
                67889**************976665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
   HTH_Tnp_1  50 geeaspaefeltaleeenre 69 
                  ++a  a  +++++++ ++e
  EHT98949.1 116 TSAAFRAA-VAREIQHFIAE 134
                 44444444.55555555555 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0057
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksv 26 
                  +r +++++ +++V  ++++g+  
  EHT98949.1 145 MPRSFTEAQAEAMVTIVFSAGAEA 168
                 579*****************9876 PP

>> YlaC  Inner membrane protein YlaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.94   5.6e+03      87      99 ..      51      63 ..      47     100 .. 0.60
   2 ?   10.9   0.0   5.2e-05      0.31      36     109 ..     128     200 ..     107     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.94
        YlaC 87 rfedidvldlrvC 99
                +f+d+d l l + 
  EHT98949.1 51 HFKDVDELGLTMV 63
                5677776666543 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.2e-05
        YlaC  36 pylflamlvsylavavlllyspylglaslilltvllillsavllldikPvyrfedidvldlrvCynGeWyvsrk 109
                 +  f+a l+ yl v   + +s + + ++ +++t+++   + +l +di  + + ed  vl lr+   G +y  r+
  EHT98949.1 128 IQHFIAELADYLEVENRMPRSFTEA-QAEAMVTIVFSAGAEALDIDIAQRRKLEDRLVLQLRMIAKGAYYWYRR 200
                 5567888888888888887776655.666788999999999**************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1597.44
//
Query:       EHT98950.1  [L=466]
Description: soluble pyridine nucleotide transhydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-56  192.1   0.0    1.6e-56  191.7   0.0    1.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-30  105.9   0.3      7e-30  103.5   0.6    2.0  2  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    3.8e-18   65.8   2.7    2.4e-16   60.1   0.0    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.4e-07   31.1   0.3    2.8e-06   26.8   0.3    2.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    6.2e-07   29.1   0.0      1e-06   28.4   0.0    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
    2.8e-06   27.5   1.1    0.00015   21.9   0.2    2.5  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.2e-05   24.7   1.1    2.2e-05   23.8   0.4    1.8  2  Thi4           Thi4 family
    5.5e-05   22.4   1.5    0.00014   21.1   1.5    1.6  1  FAD_binding_2  FAD binding domain
    9.2e-05   21.7   0.3       0.08   12.0   0.1    3.3  4  GIDA           Glucose inhibited division protein A
    9.7e-05   21.8   1.1    0.00091   18.6   0.3    2.6  3  FAD_binding_3  FAD binding domain
    0.00027   20.3   0.1     0.0052   16.1   0.0    2.4  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    0.00029   19.6   1.4      0.031   13.0   1.2    2.7  2  HI0933_like    HI0933-like protein
     0.0008   18.7   0.1     0.0025   17.0   0.0    1.8  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0047   16.9   0.3        1.8    8.5   0.2    2.8  3  NAD_binding_9  FAD-NAD(P)-binding
     0.0081   15.8   0.1     0.0081   15.8   0.1    2.5  3  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.015   15.2   1.2          2    8.2   0.0    2.5  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.084   12.7   0.1       0.47   10.3   0.0    2.2  2  DAPDH_C        Diaminopimelic acid dehydrogenase C-terminal d
       0.16   11.2   0.1        7.5    5.7   0.0    2.3  2  Amino_oxidase  Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   1.6e-59   1.6e-56       1     294 []       7     326 ..       7     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 1.6e-59
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias........................evvkklnqgiell 70 
                  +dv+viG+Gp+G  aa+ l ++ga+++++e     +g c ++g ++skal+++ ++  ++                          v++++++  + +
   EHT98950.1   7 YDVIVIGSGPGGEGAAMGLVKQGARIAVIEryhnIGGGCTHWGTIPSKALRHAVSRIIEFNqnplysdhtrllrssfadilnhteSVISQQTAMRQGF 104
                  69***************************99999*********************9977779***************999988875555555555666 PP

                  HCCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalak 163
                  ++++  ++ +g++++++ +++e     g  e+++++k ++A Gs+p  +  + v    +++ r++ds+  l+l+  p ++++ G+G+iG+E+A+ ++ 
   EHT98950.1 105 YERNRCELFQGNAHFVDANTVEvehhdGTREQLTAGKFIIACGSRPYHP--HDV---DFTHPRIYDSDSILNLHHEPGHVIIYGAGVIGCEYASIFRG 197
                  667899999**********99999**9999*******************..555...455679*********************************** PP

                  HT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 164 lgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggivv 260
                  l+++v l+  rdrll  ld+e+s+ l  ++ ++Gv +++++++++i+g ++ + ++l++g++++ad++++a G++ +t+ l  e++gle d rg ++v
   EHT98950.1 198 LNVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEFEKIEGVDDGVIMHLKSGKKVKADCLLYANGRTGNTDSLSlENVGLEADGRGLLKV 295
                  ***************************************************999******************************************** PP

                  -TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 261 deflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  ++ ++t  p+iya+GDv+   g p la aA +qG
   EHT98950.1 296 NSMYQTAQPHIYAVGDVI---GYPSLASAAYDQG 326
                  ******************...**********998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.8e+03      58      83 ..     177     202 ..     133     212 .. 0.76
   2 !  103.5   0.6     7e-33     7e-30       1     109 [.     346     457 ..     346     458 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
                    TTTBEEEEEEECTTHHHHHHHHHHHH CS
  Pyr_redox_dim  58 ktgkvlGahivGpgageliqelavai 83 
                        + Ga ++G + ++++ +l+v +
     EHT98950.1 177 GHVIIYGAGVIGCEYASIFRGLNVKV 202
                    55568999999999999999998866 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 7e-33
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTS...BHHHHH CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagl...tvedla 93 
                    ipt ++t pe++svG+te++++a++++++vg+++fk+++ra++ +++ g +K++++++t+++lG+h++G++a+e+i+  +++++++    t+e + 
     EHT98950.1 346 IPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGSLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKNggnTIEYFV 441
                    79*********************************************************************************9976667****** PP

                    TSBSSSSSTGGGGHCH CS
  Pyr_redox_dim  94 dtihihPtlsealkea 109
                    +t + +Pt++ea++ a
     EHT98950.1 442 NTTFNYPTMAEAYRVA 457
                    ***********99866 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.9     0.035        34       2      35 ..       9      42 ..       8      47 .. 0.92
   2 !   60.1   0.0   2.4e-19   2.4e-16       1      77 [.     178     251 ..     178     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.035
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v+v+G+G  g  +A  l + g+++ v+er  ++ 
  EHT98950.1  9 VIVIGSGPGGEGAAMGLVKQGARIAVIERYHNIG 42
                89***************************88776 PP

  == domain 2  score: 60.1 bits;  conditional E-value: 2.4e-19
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvk 77 
                 +v++ G+G+ig+E+A++++ l+ kV ++  +d+ll  lD+e+s+ l  ++ + g+ +++n++ e+ieg +dg   v 
  EHT98950.1 178 HVIIYGAGVIGCEYASIFRGLNVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEFEKIEGVDDG---VI 251
                 79*********************************************************************9...33 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3   2.8e-09   2.8e-06       1     305 []      10     310 ..      10     310 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.8e-09
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyrypke.mtfispsftsekleipdlnaiseets.......pafslkeeklsrkeale...Y 86 
                  i+iG GP G +aa+ l k g  ++ ++E+  nig   +++ +   + +     s+ +e+ + +  s++t          +   e  +s+++a++   Y
   EHT98950.1  10 IVIGSGPGGEGAAMGLVKQGA-RIAVIERYhNIGGGCTHWGTIpSKALR-HAVSRIIEFNQNPLYSDHTRllrssfaDILNHTESVISQQTAMRqgfY 105
                  89******************9.8******88*********875145555.568899999999999998874443333333334445555555543335 PP

  Pyr_redox_3  87 lrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnkl.nipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlel 183
                   r+ ++ f+ + + f + ++v+ e++    + ++e+++A k iiA G   +P+ + ++ + +     +  + ++ + +  +v++ G++  ++++A  +
   EHT98950.1 106 ERNRCELFQGNAH-FVDANTVEVEHH----DGTREQLTAGKFIIACGS--RPYHPhDVDFTHPRIYDSDSILNL-HHEPGHVIIYGAGVIGCEYASIF 195
                  5555555555444.233333333322....35678************8..666541455555323333334455.456789***************** PP

  Pyr_redox_3 184 vrkgaeVtvvtrgseieke.esdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfe 280
                     + +V ++  ++ + +  ++++s sl+ +  n          + +  n+e ++i+  +  + ++ ++gkkv++ d  ++a G + +++ l+ + + 
   EHT98950.1 196 RGLNVKVDLINTRDRLLAFlDQEMSDSLSYHFWNS--------GVVIRHNEEFEKIEGVDDGVIMHLKSGKKVKA-DCLLYANGRTGNTDSLSLENVG 284
                  *********98877655541556666655554443........37788999*********************987.77799********998887777 PP

  Pyr_redox_3 281 ldedgrpvlteete.etnvpglflaG 305
                  l++dgr +l+ + + +t  p ++ +G
   EHT98950.1 285 LEADGRGLLKVNSMyQTAQPHIYAVG 310
                  77777777766444389999999988 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0     1e-09     1e-06       1      44 [.       8      51 ..       8     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44
                  Dv+V+G+gp+G  AA+   ++Ga+ +++e++  +GG  t  +  
    EHT98950.1  8 DVIVIGSGPGGEGAAMGLVKQGARIAVIERYHNIGGGCTHWGTI 51
                  9************************************9976654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.2   1.5e-07   0.00015       1      55 [.      11      66 ..      11      80 .. 0.82
   2 ?    3.7   0.0     0.074        74       3      31 ..     183     211 ..     181     213 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE.CETTCEECTS---EEET CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy.evpgvrvdygahifhgs 55
                   ++G+G +G  aA  L k+g+++ ++e+ + +GG ++ + ++p  ++ + ++ +  +
     EHT98950.1 11 VIGSGPGGEGAAMGLVKQGARIAVIERYHNIGGGCTHWgTIPSKALRHAVSRIIEF 66
                   8********************************99988444776666666665555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.074
                    --SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   3 GaGlsGlvaAylLakagfdvlllekrdrl 31 
                    GaG+ G+ +A+  +  +++v+l+ +rdrl
     EHT98950.1 183 GAGVIGCEYASIFRGLNVKVDLINTRDRL 211
                    9************************9986 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.4   2.3e-08   2.2e-05      16      63 ..       5      51 ..       1      64 [. 0.88
   2 ?   -2.1   0.0       1.8   1.8e+03      19      47 ..     178     205 ..     173     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.3e-08
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                 + Dv+++G+G+ G  aa  l k+ + ++a++er   +GGG    G +
  EHT98950.1  5 YDYDVIVIGSGPGGEGAAMGLVKQ-GARIAVIERYHNIGGGCTHWGTI 51
                568*********************.****************8776665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEE CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvail 47 
                  v+i GaG  G   a ++    ++kv ++
  EHT98950.1 178 HVIIYGAGVIGCEYASIFRGL-NVKVDLI 205
                 599******999888776555.7777666 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.5   1.4e-07   0.00014       1      40 [.       8      48 ..       8      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS.GGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg.ataw 40
                   DviViGsG +G  AA+ + ++G+++av+e  ++ gg  t+w
     EHT98950.1  8 DVIVIGSGPGGEGAAMGLVKQGARIAVIERYHNIGGgCTHW 48
                   9*********************************9999999 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1     8e-05      0.08       1      35 [.       8      41 ..       8      81 .. 0.81
   2 ?   -1.8   0.0       1.3   1.3e+03      99     150 ..      98     148 ..      83     160 .. 0.73
   3 ?    4.8   0.0     0.013        13       2      30 ..     179     207 ..     178     227 .. 0.85
   4 ?   -0.0   0.1      0.37   3.7e+02     349     383 ..     297     332 ..     289     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkldti 35
                dviViG G  G  AA+ + + Ga+++ i      ++i
  EHT98950.1  8 DVIVIGSGPGGEGAAMGLVKQGARIAVIerY---HNI 41
                8*************************99442...333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 HHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS..-EEEECEEEE--TT CS
        GIDA  99 kevteklenepnleiieeeveeliveekkvkgvvtedg..etikakavviatGt 150
                 +++++   + +  e+++++++ ++    ++  v  +dg  e+++a +++ia G+
  EHT98950.1  98 TAMRQGFYERNRCELFQGNAHFVDA---NTVEVEHHDGtrEQLTAGKFIIACGS 148
                 5677777777888888888888855...34444444441156788899999997 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.013
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 vi+ G+G  Gce A     l++kv Li  
  EHT98950.1 179 VIIYGAGVIGCEYASIFRGLNVKVDLINT 207
                 8999**********************943 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.37
                 TSBBSSSBTEEE-CGGGTB-SHHHHHH..HHHHHHHH CS
        GIDA 349 tLetkkvkgLflAGqinGteGYeEaaa..qGllAGin 383
                 ++   +++++++ G++ G    +++aa  qG +A+  
  EHT98950.1 297 SMYQTAQPHIYAVGDVIGYP-SLASAAydQGRIAAQA 332
                 6777789***********97.5666666899999865 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   9.1e-07   0.00091       2      34 ..       7      39 ..       6      41 .. 0.95
   2 ?   -0.2   0.0      0.48   4.7e+02     122     161 ..     104     146 ..      84     162 .. 0.69
   3 ?   -0.7   0.0      0.68   6.8e+02     104     143 ..     216     255 ..     178     299 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.1e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   +dV+++G+Gp G  +a+ L ++G r  ++e++ 
     EHT98950.1  7 YDVIVIGSGPGGEGAAMGLVKQGARIAVIERYH 39
                   79*****************************86 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.48
                    ETCSEEEECCEECCCCCCCEEE..ECCTTEEEEEEE.EEEEE- CS
  FAD_binding_3 122 vrfktevesleqdeegvtaevr..dketgeeetvra.kYlvGa 161
                    +++ ++ e ++ +   v+a+    ++ +g++e+++a k+++++
     EHT98950.1 104 FYERNRCELFQGNAHFVDANTVevEHHDGTREQLTAgKFIIAC 146
                    4444444445555555666665556778999999987999999 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.68
                    HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEE CS
  FAD_binding_3 104 qteleriLvehaeerglqvrfktevesleqdeegvtaevr 143
                     +e+   L+ h  + g+ +r+++e+e +e  ++gv   ++
     EHT98950.1 216 DQEMSDSLSYHFWNSGVVIRHNEEFEKIEGVDDGVIMHLK 255
                    4455556777777788888888888877766666544443 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3      0.23   2.3e+02      30      59 ..       8      37 ..       5      49 .. 0.89
   2 !   16.1   0.0   5.2e-06    0.0052      27      71 ..     175     220 ..     165     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.23
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDv 59
                  v+viG G  G  A+   ++ ga++ v++ 
   EHT98950.1  8 DVIVIGSGPGGEGAAMGLVKQGARIAVIER 37
                 599************999999999999876 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 5.2e-06
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TT CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lg 71 
                  ep++v++ G+Gv G + +++ +gl+ kV ++++r + l  l++ + 
   EHT98950.1 175 EPGHVIIYGAGVIGCEYASIFRGLNVKVDLINTRDRLLAFLDQeMS 220
                  69********************************999988887544 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.2   3.2e-05     0.031       1      36 [.       7      42 ..       7      46 .. 0.95
   2 ?    4.3   0.0     0.014        14     114     163 ..     222     270 ..     179     312 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +dviviG G+ G  aA+ + k+g+r++++e+ +++g
   EHT98950.1  7 YDVIVIGSGPGGEGAAMGLVKQGARIAVIERYHNIG 42
                 59****************************998887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.014
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                   l  +  ++gv +r ++e +++e  +dg + +++ks+++++ad l+ A G
   EHT98950.1 222 SLSYHFWNSGVVIRHNEEFEKIEGVDDG-VIMHLKSGKKVKADCLLYANG 270
                  5566667899************999999.999999************988 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.2   1.2e+03       3      22 ..       7      26 ..       5      40 .. 0.57
   2 !   17.0   0.0   2.5e-06    0.0025     132     205 ..     122     190 ..      74     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
  K_oxygenase  3 lDligiGiGpsnLsLaille 22
                 +D+i iG Gp   + a+ l 
   EHT98950.1  7 YDVIVIGSGPGGEGAAMGLV 26
                 67777777775444444444 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.5e-06
  K_oxygenase 132 lltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaae 205
                  + tve+++++g++e+l+a + +++ G++p+ P+ ++ ++  +r++ s+++l+ +   +++ ++++ G+G  + e
   EHT98950.1 122 ANTVEVEHHDGTREQLTAGKFIIACGSRPYHPHDVDFTH--PRIYDSDSILNLH---HEPGHVIIYGAGVIGCE 190
                  45789999***************************9654..8********9987...899*********88877 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2    0.0018       1.8       2      67 ..      11      81 ..      10     133 .. 0.70
   2 ?   -0.6   0.0       1.2   1.2e+03     115     154 ..     108     147 ..      95     149 .. 0.71
   3 ?    5.2   0.0      0.02        20     117     155 ..     233     271 ..     207     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddp..........p 67
                   ++G Gp G  ++  L+++       +i ++++ +++g g  +  + ++   l  ++s++  f ++p           
     EHT98950.1 11 VIGSGPGGEGAAMGLVKQ-----GARIAVIERyHNIGGGCTHWGTIPSK-ALRHAVSRIIEFNQNPlysdhtrllrS 81
                   8*****************.....59*******77888565555554444.444444444445555556555555554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
  NAD_binding_9 115 vtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                     + e+++++++ ++ +  +++ +  + ++l+a + ++A+G
     EHT98950.1 108 NRCELFQGNAHFVDANTVEVEHHDGTREQLTAGKFIIACG 147
                    4667777777777776666666666668899999999999 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.02
  NAD_binding_9 117 vevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    v  h++e +++e  +dg+ ++l++g++++ad +  A G 
     EHT98950.1 233 VIRHNEEFEKIEGVDDGVIMHLKSGKKVKADCLLYANGR 271
                    56799**************************99999885 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   8.1e-06    0.0081       1      40 [.       8      49 ..       8     147 .. 0.89
   2 ?   -0.4   0.6      0.69   6.9e+02       1      12 [.     178     189 ..     178     195 .. 0.91
   3 ?   -2.6   0.0       3.2   3.2e+03     159     201 ..     230     270 ..     221     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.1e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrn 40
                dv++iG+G  G ++A+ L ++g  ++++e+ + +g g+++  
  EHT98950.1  8 DVIVIGSGPGGEGAAMGLVKQGarIAVIERYHNIGGGCTHWG 49
                8**********************************9999865 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.69
                 EEEEECTSHHHH CS
         DAO   1 dvviiGGGiiGl 12 
                 +v+i G+G+iG+
  EHT98950.1 178 HVIIYGAGVIGC 189
                 799********9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.2
                 TT-EEEESECEEEEEEEE.TCEEEEEEECTEEEEEEEEEEE--G CS
         DAO 159 lGveilegtevtgleeed.gkvwgverttpgendaadavVnaaG 201
                  Gv i+ ++e +++e  d g ++++   ++g +++ad++  a+G
  EHT98950.1 230 SGVVIRHNEEFEKIEGVDdGVIMHL---KSGKKVKADCLLYANG 270
                 6899999999998865432555555...3466655688888877 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.3     0.034        34       2      31 ..       9      38 ..       8      49 .. 0.92
   2 ?    8.2   0.0     0.002         2       2      46 ..     179     223 ..     178     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.034
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdis 31
                v viG+G  G+g a+ ++++g ++ ++++ 
  EHT98950.1  9 VIVIGSGPGGEGAAMGLVKQGARIAVIERY 38
                78************************9986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.002
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksl 46 
                 v + GaG++G + a++f   +++V l++++++ l+   +++++sl
  EHT98950.1 179 VIIYGAGVIGCEYASIFRGLNVKVDLINTRDRLLAFLDQEMSDSL 223
                 7799*************************9999988888887766 PP

>> DAPDH_C  Diaminopimelic acid dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.9   1.9e+03     107     125 ..     113     131 ..      50     156 .. 0.72
   2 ?   10.3   0.0   0.00047      0.47      18      53 ..     219     254 ..     210     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
                 SEEEEEE--HHHHHHHSSS CS
     DAPDH_C 107 ydttvhfiseeelkkehsg 125
                 ++ + hf+++++++ eh++
  EHT98950.1 113 FQGNAHFVDANTVEVEHHD 131
                 5567788888888877753 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00047
                 SSSEEEEEEE-SEE-HHHHHHHCTSTTECEEEEEEE CS
     DAPDH_C  18 lpegktytfWGkGvsqghsdairriegvkdavqyti 53 
                 ++++ +y fW  Gv   h +   +iegv d+v   +
  EHT98950.1 219 MSDSLSYHFWNSGVVIRHNEEFEKIEGVDDGVIMHL 254
                 5667789***********************987665 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0075       7.5     210     254 ..     221     263 ..     188     268 .. 0.87
   2 ?    3.1   0.0     0.047        47     408     452 .]     293     334 ..     275     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0075
                    HHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEES CS
  Amino_oxidase 210 sqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaD 254
                    ++l  ++++  +g+ ir n++  +i+  +dgv  +l++g++v+aD
     EHT98950.1 221 DSLSYHFWN--SGVVIRHNEEFEKIEGVDDGVIMHLKSGKKVKAD 263
                    566667777..9********************************9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.047
                    HHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 408 edydplakpegdprlffAGehtsreypgtvegAilSGlraAaril 452
                    +    ++++   p ++  G+ +   yp+    A+  G+ aA++i+
     EHT98950.1 293 LKVNSMYQT-AQPHIYAVGDVIG--YPSLASAAYDQGRIAAQAII 334
                    556677788.9999*******99..******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3776.71
//
Query:       EHT98951.1  [L=305]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-52  176.2   0.8    7.6e-52  175.7   0.8    1.2  1  LysR_substrate  LysR substrate binding domain
    9.5e-21   73.5   0.4    2.7e-20   72.1   0.2    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0031   17.3   0.1     0.0095   15.7   0.1    1.8  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   0.8   1.3e-55   7.6e-52       3     208 ..      88     293 ..      86     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 1.3e-55
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                       +g L+ig +pt+++yllp++++ +++ +P++e+ l+e+++++ll++l++g+lD+ai+a+  e++ ++ +pL++ep+ l++ +dhp+ ++++v+
      EHT98951.1  88 AMSGPLHIGLIPTTGPYLLPQIIPMLHQTFPKLEMYLHEAQTQQLLAQLDSGKLDCAILALVKESEAFIEVPLFDEPMKLAVYEDHPWRERDRVP 182
                     568******************************************************************************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     ++dLa+e+l++le+g++lrd++  ++ eag + +  ++++sle+l+++vaaG Gi+llp++av +   ++++ +lp+  p ++r+++lvyr+g++
      EHT98951.1 183 MSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPQRVRDGVCYLPCYKPVPQRTIALVYRPGSP 277
                     *******************************************************************************5555************ PP

                     CHHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflreal 208
                     l+++ +++++++r+++
      EHT98951.1 278 LRSRYEQLAEAIRTHM 293
                     ************9987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.2   4.5e-24   2.7e-20       1      59 [.       3      61 ..       3      62 .. 0.98
   2 ?   -2.1   0.0      0.66   3.9e+03      32      47 ..     147     162 ..     144     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 4.5e-24
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +r+l+++v +ae+++f+rAA+++++sqp++s qi++LE+elgv L+eRt+r++  T+aG
  EHT98951.1  3 IRDLEYLVSLAEHRHFRRAADACHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAG 61
                699*******************************************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.66
                 HHHHHHHHHHTS-SEE CS
       HTH_1  32 rqikrLEeelgvpLfe 47 
                 + +k+ E+ ++vpLf+
  EHT98951.1 147 ALVKESEAFIEVPLFD 162
                 56888899999***97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.6e-06    0.0095       9      47 ..      12      50 ..       7      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-06
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddp 47
                l++++  +++A+a hv+  Tl+  +r++e+ lg+ l + 
  EHT98951.1 12 LAEHRHFRRAADACHVSQPTLSGQIRKLEDELGVMLLER 50
                77889999*************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2441.55
//
Query:       EHT98952.1  [L=457]
Description: argininosuccinate lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-97  326.4   0.0    2.9e-97  325.9   0.0    1.2  1  Lyase_1   Lyase
    1.7e-22   80.0   0.2    5.7e-22   78.2   0.2    2.0  1  ASL_C2    Argininosuccinate lyase C-terminal
  ------ inclusion threshold ------
      0.043   13.8   0.1       0.14   12.2   0.1    1.8  1  Sigma_1s  Sigma 1s protein
        2.7    8.2   6.3       0.77   10.0   0.7    2.7  4  K-box     K-box region


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.9   0.0  6.4e-101   2.9e-97       1     312 []       6     301 ..       6     301 .. 0.99

  Alignments for each domain:
  == domain 1  score: 325.9 bits;  conditional E-value: 6.4e-101
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekv 99 
                 grft++ad+ +++f++++r+++rl e+di +++a++ka+ ++nv+   e+++ ++al+++lee++++++++l+++ e+++++v+ +l e +g       
  EHT98952.1   6 GRFTQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVNVLSSDEQQQLEAALNALLEEVRANPEQILQSDAEDIHSWVEGQLIEKVG------- 97 
                 89******************************************************************************************....... PP

                 GIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEET CS
     Lyase_1 100 epndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvell 198
                 +  +k+htg+S+nDqv+T+l+l++k+++ + Ll+a ++L++al+++a+ ++d v++G+Thlq+A+Pvt+++++ ay+e+l rd++rl+++lkrl v++l
  EHT98952.1  98 ALGKKLHTGRSRNDQVATDLKLWCKEQV-AALLDATRELQQALVATAEVNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDTLKRLDVSPL 195
                 9***************************.66******************************************************************** PP

                 TTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBT CS
     Lyase_1 199 gggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNP 297
                 g+g+++gt++ +d+e   ++a +l+ +++    ++ns++ vsdrD+v+ell+ +++ +++Ls+faeD++++++geag++els+  ++ GSS+MP+K+NP
  EHT98952.1 196 GCGALAGTAYAIDRE---QLAGWLG-FAS---ATRNSLDTVSDRDHVLELLSDASIGMVHLSRFAEDMIFFNTGEAGFIELSDKVTS-GSSLMPQKKNP 286
                 ***************...*******.999...9*****************************************************9.*********** PP

                 HHHHHHHHHHHHHHH CS
     Lyase_1 298 vqlElltgvagrvvG 312
                 ++lEl++g++grv+G
  EHT98952.1 287 DALELIRGKCGRVQG 301
                 *************98 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.2   1.3e-25   5.7e-22       1      68 [.     364     431 ..     364     432 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 1.3e-25
                 STTHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHT CS
      ASL_C2   1 FstATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasV 68 
                 +++ T+lADyLv+kG+pFReAH+ivg+ v +a+++g++le+l+l++lk++s ++e+dv+ +L + +++
  EHT98952.1 364 YANSTELADYLVAKGVPFREAHHIVGETVVAAIAQGVALEALSLSQLKQFSAVIEDDVYPVLALSSCL 431
                 6899**********************************************************998876 PP

>> Sigma_1s  Sigma 1s protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.1e-05      0.14      43     102 ..      36      93 ..      18      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
    Sigma_1s  43 vgqpllrelVrtnlelidskalseaykqlsadlirvyPswVtEsmllrqeLqsyilsrii 102
                  +  +++ lV+ n+ + d ++  ea + ++ + +r+ P+ ++ s+   +++ s++  ++i
  EHT98952.1  36 GSVAWSKALVTVNVLSSDEQQQLEAALNALLEEVRANPEQILQSDA--EDIHSWVEGQLI 93 
                 4678**************************************9986..699999988776 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.7   0.00017      0.77      39      76 ..      49      86 ..      45     104 .. 0.80
   2 ?    0.8   0.1      0.12   5.5e+02      52      91 ..      99     138 ..      91     139 .. 0.88
   3 ?   -3.4   0.0       2.5   1.1e+04      71      88 ..     173     190 ..     169     191 .. 0.67
   4 ?   -3.6   0.0       2.9   1.3e+04      36      49 ..     401     414 ..     398     419 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
       K-box 39 slslkeLqqLEqqLekslkkiRsrKeqllleeieelkk 76
                 ls +e qqLE  L++ l+++R+  eq+l+   e+++ 
  EHT98952.1 49 VLSSDEQQQLEAALNALLEEVRANPEQILQSDAEDIHS 86
                6899999**********************999998775 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
       K-box  52 LekslkkiRsrKeqllleeieelkkkekqleeenkeLrek 91 
                 L k l++ Rsr +q+ ++    +k++   l ++ +eL++ 
  EHT98952.1  99 LGKKLHTGRSRNDQVATDLKLWCKEQVAALLDATRELQQA 138
                 67788999********999999999999999999999985 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.5
       K-box  71 ieelkkkekqleeenkeL 88 
                 +e+l + e++l++  k+L
  EHT98952.1 173 VEMLARDESRLQDTLKRL 190
                 567777777777766655 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.9
       K-box  36 dleslslkeLqqLE 49 
                  le lsl +L+q  
  EHT98952.1 401 ALEALSLSQLKQFS 414
                 68889999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3383.72
//
Query:       EHT98953.1  [L=405]
Description: argininosuccinate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-142  474.4   0.0   3.6e-142  474.2   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
  ------ inclusion threshold ------
      0.038   13.5   0.0      0.074   12.5   0.0    1.4  1  QueC             Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.2   0.0    4e-146  3.6e-142       1     386 [.      10     397 ..      10     399 .. 0.99

  Alignments for each domain:
  == domain 1  score: 474.2 bits;  conditional E-value: 4e-146
  Arginosuc_synth   1 vLaysGGlDtsviikllkeklg.eeviavavdvGqeeedldevkekalklgavksvvvDakeefvedyifpaikanalYedrYllgtalaRPli 93 
                      vLaysGGlDts ii++lke++g  ev+a+++d+Gqe+ dl+ v++kal+ ga +  vvD +eef+ dy++p +++ alYe+ Yllgt++aRP+i
       EHT98953.1  10 VLAYSGGLDTSAIIPWLKENYGgCEVVAFVADIGQERSDLEGVDKKALQSGASECHVVDLREEFISDYVYPVLQTGALYEGTYLLGTSMARPII 103
                      8********************989********************************************************************** PP

  Arginosuc_synth  94 akklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.ReeeieyakekgipvevtkkkpysiDenllgrsieagiLe 186
                      ak++ve+a k ga+a+ hG+tGkGnDqvRfe++ ++laP+lkv+aP+Re++l  Re  ++y k+++ip  ++ +k ys Den +++s+e+g+Le
       EHT98953.1 104 AKAQVELALKVGADALCHGATGKGNDQVRFETTYTALAPQLKVVAPWREWDLRsREALLDYLKARNIPTTASLEKIYSRDENAWHISTEGGVLE 197
                      ***************************************************977**************************************** PP

  Arginosuc_synth 187 dpknappediyeltkdpakapdepeeveiefekGvPvaldgeelsvlelieklneiagkhGvGRiDivedRlvglksReiYeapaalvLikahk 280
                       p+nap +d + +t dp +apd+pe+v++  ekG  va++ge+ls+++ +ekln ++ khGvGRiDive+Rlvg+ksR++Ye+p+ +++++a +
       EHT98953.1 198 SPSNAPNKDCWVWTVDPLEAPDQPEDVTVTVEKGRVVAVNGERLSPFQCLEKLNVLGAKHGVGRIDIVENRLVGIKSRGCYETPGGTIMVNALR 291
                      ********************************************************************************************** PP

  Arginosuc_synth 281 dlekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiektqervtGtvrvklfkGsvvvlgReseeslYdeelasydeedefdqkeae 374
                      ++e+l+l+r+  k+++++ ++++ +vY+G wf Pl+++++a+ e+  e+v+G+v ++l+kG+++ + ++s++slY+ee a++ e++ +d+++a 
       EHT98953.1 292 AVEQLVLDRDSFKWREQLGHEMSYVVYDGRWFAPLRKSIQAAAESLAEEVNGEVVLQLYKGQATATQKRSANSLYSEEFATFGEDEVYDHRHAG 385
                      ********************************************************************************************** PP

  Arginosuc_synth 375 Gfikihglqakl 386
                      Gfi++++l++++
       EHT98953.1 386 GFIRLFSLSSRI 397
                      ********9986 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.3e-06     0.074       2      62 ..       9      70 ..       8      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.3e-06
                EEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T.TSHHHHHHHHHHHHT--.-EEEEE-G CS
        QueC  2 avvllSGGlDSttvlalakkegkevealtfdYgqr.hkkeleaakkiakelgveehkildld 62
                +v+  SGGlD ++++ + k+++  +e++ f  +   ++++le ++k a + g +e +++dl+
  EHT98953.1  9 IVLAYSGGLDTSAIIPWLKENYGGCEVVAFVADIGqERSDLEGVDKKALQSGASECHVVDLR 70
                68889****************98777777754433367889999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3051.17
//
Query:       EHT98954.1  [L=258]
Description: acetylglutamate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-39  136.5   2.8    1.2e-39  136.3   2.8    1.0  1  AA_kinase  Amino acid kinase family
  ------ inclusion threshold ------
      0.062   13.7   0.0       0.27   11.6   0.0    2.0  2  Smr        Smr domain
      0.076   13.3   0.3       0.23   11.7   0.3    1.7  2  DUF4332    Domain of unknown function (DUF4332)
        0.2   11.2   0.0       0.26   10.8   0.0    1.1  1  GDE_N_bis  N-terminal domain of (some) glycogen debranching e


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   2.8   2.8e-43   1.2e-39       3     240 ..       5     235 ..       3     236 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 2.8e-43
                 EEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHT.TEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGE CS
   AA_kinase   3 vVvKlGGssltdkeeaslrrlaeqiaalkesg.nklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpa 100
                 +++KlGG +l+++e+  l rl++ + a+++++ ++l++VhGgg  +d+l+++   l+ ++++ glr+t + + +++t +++++ ++ l+a   ++g++a
  EHT98954.1   5 LIIKLGGVLLDSEEA--LARLFDALLAYRSAHqRPLIIVHGGGCLVDELMKK-LALPVQKKN-GLRVTPADQIDIITGALAGTANKTLLAWAKKYGIQA 99 
                 79*************..***********6666699*****************.*********.************************************ PP

                 EEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTT CS
   AA_kinase 101 vglsaaaldateagr...degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpda 196
                 vgl+  + ++++  +     g++gn +  + + i++ll ag+ pv++ + g+++ gel ++++D++a++lA  lgA  l++l+dV+G++d  +      
  EHT98954.1 100 VGLCLGDAGLVNVTQldeALGHVGNATPGNPALINTLLGAGYMPVVSSI-GITDSGELMNVNADQAATALASTLGA-DLVLLSDVSGILDGKG------ 190
                 ************999**9******************************6.6*************************.78888*******9976...... PP

                 CECCEEEHHHCHH.CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 197 rllpeisvdeaee.saselatgGmkvkhpaalaaarrggipvvIt 240
                 ++++e+++d+ae+ +a++ +t Gm+vk+ aal+aar  g pv I+
  EHT98954.1 191 QRIEEMTADKAEQlIAQGIITDGMIVKVNAALDAARTLGRPVDIA 235
                 9***********************************988999886 PP

>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-05      0.27       6      45 ..      14      47 ..      12      83 .. 0.82
   2 ?   -1.2   0.0      0.59   2.7e+03      44      64 ..     177     198 ..     161     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
                --HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTTHCHH CS
         Smr  6 lrraealnvletfldaasakglrsvevihGkGahagvgvL 45
                l  +eal++l + l a ++++ r + ++hG G       L
  EHT98954.1 14 LDSEEALARLFDALLAYRSAHQRPLIIVHGGGC------L 47
                6789**************************996......4 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHCS.TTEEEEEE CS
         Smr  44 vLrpavmgwLagk.eaveafre 64 
                 vL + v g L+gk +++e+++ 
  EHT98954.1 177 VLLSDVSGILDGKgQRIEEMTA 198
                 7778888888888766666554 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.1e-05      0.23      13      78 ..     147     213 ..     144     222 .. 0.91
   2 ?    5.0   0.0    0.0062        28       2      28 ..     195     221 ..     194     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
     DUF4332  13 kaGikttedLlelgktekgrkalaeklgisernvlklanlAdLa..rikgigeeyaeLLeaaGvdsva 78 
                 + Gi+++ +L++ ++++++  ala++lg+++  + +   + d    ri+ ++  +ae L+a G+ +  
  EHT98954.1 147 SIGITDSGELMNVNADQAAT-ALASTLGADLVLLSDVSGILDGKgqRIEEMTADKAEQLIAQGIITDG 213
                 68***************999.*********************9889******************9965 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0062
     DUF4332   2 gigkeeaekLkkaGikttedLlelgkt 28 
                 ++++++ae+L ++Gi t   +++ ++ 
  EHT98954.1 195 EMTADKAEQLIAQGIITDGMIVKVNAA 221
                 7899*************9999988765 PP

>> GDE_N_bis  N-terminal domain of (some) glycogen debranching enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.8e-05      0.26      89     146 ..     145     203 ..     140     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.8e-05
   GDE_N_bis  89 vng.glfeeleltNynttpvefelslsfdaDFaDlfevrgfrrekrgkllrleaedeel 146
                 v   g++++ el N n++++++ l+ +++aD++ l  v g    k +++++++a++ e 
  EHT98954.1 145 VSSiGITDSGELMNVNADQAATALASTLGADLVLLSDVSGILDGKGQRIEEMTADKAEQ 203
                 5555788999******************************9755444466666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1884.88
//
Query:       EHT98955.1  [L=334]
Description: N-acetyl-gamma-glutamylphosphate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-34  118.4   0.0    3.8e-34  117.7   0.0    1.3  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    5.6e-16   59.2   0.0    8.7e-16   58.5   0.0    1.3  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
  ------ inclusion threshold ------
       0.02   15.7   0.0      0.068   14.0   0.0    1.9  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.081   13.1   0.0       0.16   12.1   0.0    1.5  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
       0.15   11.5   0.0       0.28   10.6   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   1.1e-37   3.8e-34       3     121 .]       5     146 ..       3     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 1.1e-37
                     EEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT..TTTSBHHHHSGGGTTTECEBEEE.GGGGGC.TT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh   3 aivGatGyvGqellrlLeehpevelvvllsssr..saGkklaeavkaleegkdlkved.vdeeel.kevdivflalpagvskelapklaeagvkv 93 
                      ivGa+Gy G el++ L++hp++++++l+ s++  +aGk+l++++++l+++ dl++++   ++e+ ++vd+vfla+ ++vs++lap++++ag++v
      EHT98955.1   5 LIVGASGYAGVELATFLNRHPHINITALAVSAQspDAGKRLSDLHPQLKGVVDLPLQPlSRADEWaDKVDVVFLATAHEVSHDLAPEFLKAGCVV 99 
                     69*************************999999889**********************86666668***************************** PP

                     EESSSTTTTST...................TSEBE-HHHHGGGGGGH CS
  Semialdhyde_dh  94 iDlssdfRlkd...................davyvlpevnreaikka 121
                     +Dls++fR++d                   +avy+l+e ++e+ik+a
      EHT98955.1 100 FDLSGAFRVNDgefytqfygfthqhgdwldKAVYGLAEFQQEKIKEA 146
                     ********************************************986 PP

>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   2.4e-19   8.7e-16       1     184 []     163     311 ..     163     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2.4e-19
                      HHHHHHC..TT.EEEEEEEEEEEGGGCHHHHHHHHHHHHHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESC CS
  Semialdhyde_dhC   1 LkPLlda..lgelervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte 92 
                      LkPL+da  l e ++ +++++++vSGaG+k                   ++v  + ++ +l py     +++ pe+  +l+     + +l+ ++
       EHT98955.1 163 LKPLVDAglLNEAQWPVINATSGVSGAGRK-------------------ANVGTSFCEVSLQPYGIF-NHRHHPEIVAHLGTPVIFTPHLGSFP 236
                      8******8555669***************7...................999999**********99.99***********************9 PP

                      SEEEEEEEESBSSEEEEEEEEEES..SSHHHHHHHHHHHHCSTTEEEEESSHCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEEETTTT CS
  Semialdhyde_dhC  93 kvsatcvrVPvlrGhseavtiklk..lkdveveeveellaaapevkvvvneeedrPtpaavaggtnsvsVGRirkdemgdeglklvvvgDNllk 184
                                  rG+++++t++l+  +++++v+ev+ + +++ ++ v+v e + +P ++av+g    +++G + ++   ++ l +v+++DNllk
       EHT98955.1 237 ------------RGILATITCRLNagVSRDDVAEVFHNAYHD-KPLVRVYE-QGVPALKAVVG-LPYCDIG-FAVQG--EH-LIVVAAEDNLLK 311
                      ............******************************.*******6.**********9.8******.88877..44.9*********97 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.9e-05     0.068       2      90 ..       3     100 ..       2     101 .. 0.65
   2 ?   -2.4   0.0       2.4   8.5e+03      27      64 ..     131     168 ..     113     170 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                   EEEEETT.SHHHHHHHHHHHHTTTTEEEEEEE..CSSHHHHHHH.HHHTTHEEESS........HHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT CS
  GFO_IDH_MocA   2 rvaiiGa.Gkigskhlrplnesqrleevvall..dpdaeraeav.aesfgveaysd........leelladpeidavivatpngtheelakaaleag 86 
                   + +i+Ga G++g + +  + +++++ +++al    +++ + +++   + +++ + d         +e ++  ++d+v+ at  +  ++la ++l+ag
    EHT98955.1   3 NTLIVGAsGYAGVELA-TFLNRHPHINITALAvsAQSPDAGKRLsDLHPQLKGVVDlplqplsrADEWAD--KVDVVFLATAHEVSHDLAPEFLKAG 96 
                   789****666666666.66666588877765411455555555553333333333355333222555555..9************************ PP

                   -EEE CS
  GFO_IDH_MocA  87 khvl 90 
                   + v+
    EHT98955.1  97 CVVF 100
                   *987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
                   EEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTES CS
  GFO_IDH_MocA  27 evvalldpdaeraeavaesfgve.aysdleelladpeid 64 
                    v +l + ++e+ ++ a+   v+ +y   ++l+ +p +d
    EHT98955.1 131 AVYGLAEFQQEKIKE-AQLIAVPgCYPTASQLALKPLVD 168
                   556666666666665.46666777888887777776666 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05      0.16       4      91 ..       5      96 ..       2     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
                EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHS.SSS.--S-BEB..SSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHTT CS
      DapB_N  4 avvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagell.glg.klgvavt..ddleevlekadvliDFTtpeavlenlklalekg 91
                ++vGasG  G e++  ++++++++++a   + +s+  gk +++l  +l+  ++++++  ++ +e ++k+dv+   T++e++ +++   l++g
  EHT98955.1  5 LIVGASGYAGVELATFLNRHPHINITALAVSAQSPDAGKRLSDLHpQLKgVVDLPLQplSRADEWADKVDVVFLATAHEVSHDLAPEFLKAG 96
                79*************************99999999999998865424555788888777999999999*****9999999999887777665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.7e-05      0.28       2      76 ..       5      86 ..       4      92 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.7e-05
                EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTC.HHCHHC.....EEEE--TT-HHHHHHHHHHHT-SEEEE-.-S.--- CS
   Epimerase  2 lVtGatGfiGsalvkallekgye.vigldrlssasnt.arledl.....elveldltdrsalerlfkeeqpdavihl.Aa.vgg 76
                l++Ga+G+ G  l+  l+++ +  +++l+   ++    +rl dl      +v+l l   s+ ++  +  ++d+v+++ A  v++
  EHT98955.1  5 LIVGASGYAGVELATFLNRHPHInITALAVSAQSPDAgKRLSDLhpqlkGVVDLPLQPLSRADEWAD--KVDVVFLAtAHeVSH 86
                89*******************5547777766544443044444499999999999999999999999..99*999994445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2549.55
//
Query:       EHT98956.1  [L=382]
Description: acetylornithine deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-31  110.0   0.0    2.3e-31  109.1   0.0    1.4  2  Peptidase_M20  Peptidase family M20/M25/M40
    2.4e-26   91.8   0.0    3.9e-26   91.1   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
     0.0079   15.9   0.0      0.013   15.2   0.0    1.3  1  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
       0.16   11.0   0.0       0.27   10.2   0.0    1.4  1  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.2   5.2e+03     131     166 ..      29      65 ..      22      70 .. 0.72
   2 !  109.1   0.0   5.1e-35   2.3e-31       1     206 [.      76     378 ..      76     379 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
                    C..CHHHHHHHHHHHHHHHTSCEEEE.EESSSBHTHHHH CS
                    x..xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20 131 n..dsplvkalaeaaeelfgekveli.vsgpggtdarff 166
                    +  ++ l+++la   ++l g +ve+  v+g   + ++++
     EHT98956.1  29 DqsNETLINLLAGWFRDL-GFTVEVQpVPG-TRHKFNML 65 
                    344788899999999998.98866665777.77777766 PP

  == domain 2  score: 109.1 bits;  conditional E-value: 5.1e-35
                    EEEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdav 94 
                    ll++H+D+Vp ++    wt+ pf+lte+d+klyG G++dmkg  + +l  lr ++ + +   +++ +l+++dEE++++Ga +++++   + ++d+ 
     EHT98956.1  76 LLAGHTDTVPfDDGR--WTRdPFTLTEHDNKLYGLGTADMKGFFAFILDTLRDVDVTAL--SKPLYILATADEETTMAGASYFAAST--QLRPDC- 164
                    699*******77777..************************************999974..77***********988********64..589999. PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                      ++i+ep+ l+       +v                                                                           
     EHT98956.1 165 --AIIGEPTSLK-------PVrahkghisnairiqgqsghssdpargvnaielmhesitelmqlrntlksrynhdgfaipyptmnfghihggdaan 251
                    ..66********.......55556778899****************************************************************** PP

                    ........................................EEEEEEE.EEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT CS
                    ........................................xxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 ........................................kvevell.eggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarffagi 169
                                                            ++++e+l    + ++++ d++lvk++++ +    g  + ++v   ++t+a+f++++
     EHT98956.1 252 ricaccelhmdirplpgltlsdldallnealapvserwpgRITIEELhPPIPGYECPvDHELVKVVEKLL----G--TPTEVVN-YCTEAPFIQQL 340
                    ***************************************88999988889999999999*******9994....7..5566889.********999 PP

                    .EEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    .xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 170 .ptvmifgpgs.glaHspnEyvdledlekgikvlarlle 206
                     pt+ ++gpgs  +aH+p+E++d + ++   +++a++++
     EHT98956.1 341 cPTL-VLGPGSiNQAHQPDEFIDTAFIQPTRALIAQVVQ 378
                    8888.6****88*************99999999998876 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   8.7e-30   3.9e-26       2     107 ..     178     288 ..     177     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 8.7e-30
                 EB-EEEEEEEEEE-B-EEGG-TTTTB-HHH.......HHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHH CS
   M20_dimer   2 ghkGlaggkitvkgkagHsgapgagaNAie.......klarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeev 93 
                 +hkG+++  i+++g++gHs+ p +g+NAie       +l++l + l++ +++  +++ +p++t+n+++i+gG+a+n i++++e+++diR+lpg ++ ++
  EHT98956.1 178 AHKGHISNAIRIQGQSGHSSDPARGVNAIElmhesitELMQLRNTLKSRYNH--DGFAIPYPTMNFGHIHGGDAANRICACCELHMDIRPLPGLTLSDL 274
                 8*****************************6666666666666666666666..66******************************************* PP

                 HHHHHHHHTSCCST CS
   M20_dimer  94 leeieeilekeape 107
                  + ++e+l+ + ++
  EHT98956.1 275 DALLNEALAPVSER 288
                 *******9988766 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.9e-06     0.013      12      86 ..      72     158 ..      63     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-06
                    SEEEEEEEE--B-TTT.............TCC...T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHC CS
  Peptidase_M28  12 devlllgAHyDsvgvg.............rgp...ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakp 86 
                    +  lll++H D+v+++             + +      G  D     a++L ++r +    + + + + +l++  EE  + G+++fa a++
     EHT98956.1  72 AGGLLLAGHTDTVPFDdgrwtrdpftlteH-DnklYGLGTADMKGFFAFILDTLRDVDV--TALSKPLYILATADEETTMAGASYFA-AST 158
                    4679************99**9888888751.3556778999*9999***********97..579***********************.444 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     6e-05      0.27     140     187 ..     118     167 ..      95     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6e-05
                    HHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHH..HH--SEEEE CS
  Peptidase_M42 140 avllellkelkeeeleatvylvatvqEEvGlrGaktsae..kikpdiaia 187
                    a +l++l+ +  ++l+  +y++at  EE  + Ga+++a   +++pd+ai 
     EHT98956.1 118 AFILDTLRDVDVTALSKPLYILATADEETTMAGASYFAAstQLRPDCAII 167
                    678999999999999********************987611566777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2770.19
//
Query:       EHT98957.1  [L=882]
Description: phosphoenolpyruvate carboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-291  968.8   0.0   2.6e-291  968.4   0.0    1.2  1  PEPcase    Phosphoenolpyruvate carboxylase
    4.7e-05   22.1   0.0      8e-05   21.3   0.0    1.4  1  PEPcase_2  Phosphoenolpyruvate carboxylase
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.38   10.7   0.0    1.7  2  DUF4446    Protein of unknown function (DUF4446)


Domain annotation for each model (and alignments):
>> PEPcase  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  968.4   0.0  4.4e-295  2.6e-291       2     795 .]     128     882 .]     127     882 .] 0.98

  Alignments for each domain:
  == domain 1  score: 968.4 bits;  conditional E-value: 4.4e-295
                 --EEEEE---TT--SSS--HHHHHHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHH---B-SS---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
     PEPcase   2 leielVlTAHPteivRrtilkkqrriaelleqldeaelteeereeleeqleeeiallwrtdelrqekptvldEvenglsyfeevlfeavPellreleea 100
                 l++elVlTAHPtei+Rrt+++k  +++++leqld+++ +e+er+++ ++l++ +a++w+tde+r+ +pt++dE+++g++++e++l+e vP++lrel+e+
  EHT98957.1 128 LSLELVLTAHPTEITRRTLIHKLGEVNSCLEQLDHSDISEYERNQIMRRLRQLVAQAWHTDEIRKYRPTPVDEAKWGFAVVENSLWEGVPAFLRELNEQ 226
                 6899*********************************************************************************************** PP

                 HHHHTS.----T.---EEEEE-TTTB-TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....----HHHHHTT-SSS.............. CS
     PEPcase 101 lkesfpelelpa.asflrfgsWiGgDRDGNpnVtaevtrevlllqrelalekylkeveeLieeLslslelvevseellesleedkekleevyeelaery 198
                 ++e+f+  +lp+   +++f+sW+GgDRDGNpnVta++tr+v++l+r++a +++l+++  Li+eLs+    +e+s+e+ e+  + +              
  EHT98957.1 227 VEETFG-IKLPVdFVPVQFTSWMGGDRDGNPNVTAAITRHVMQLSRWKATDLFLRDIGVLISELSM----SECSQEVAELSGDPE-------------- 306
                 ******.55665599***************************************************....899999998877764.............. PP

                 TTSHHHHHHHHHHHHHHHHHHHHHHHHHT-.-----TT---SHHHHHHHHHHHHHHHHHTT-HHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHHH CS
     PEPcase 199 keepYRlklaelrkrLentrerleelaekeeeeleeeeayesaeelledLelikesLketgaklladgeledlirqvevfGlhLaklDiRqeserheea 297
                 + epYR++l+ lr++L +t++ le++ + e +  ++++ + s+++l+++L +i++sL+++g+ ++a+g+l d++r+v++fG+ L+++D+Rqes+rh+ea
  EHT98957.1 307 ALEPYRVILKRLRSQLMSTQAYLERRLKGE-RLPRPADLLVSNAQLWDPLFAIYQSLQQCGMGIIANGQLLDTLRRVKCFGVPLVRIDVRQESTRHTEA 404
                 47***************************9.7799**************************************************************** PP

                 HHHHHHHTTS.--GGGS-HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS.-...TTSEEEEEEET--SHHHHHHHHHHHHHTT-..-. CS
     PEPcase 298 laeileylglekdYaelseeervelLlreLeskrplipkelelseeteevldvlrviaelqeefgkeiietyviSmaeeasdvLevllLakeaglldka 396
                 +aei++ylgl +dY+++se++++++L+reL+skrpl+p+++e s+et+evl++++v+ae+     + +i +yviSma+++sdvL+v+lL keag+  + 
  EHT98957.1 405 IAEITRYLGL-GDYESWSEADKQAFLIRELNSKRPLLPRSWEPSDETREVLETCKVVAEAP----QGSIAAYVISMAKTPSDVLAVHLLLKEAGI--PF 496
                 **********.*************************************************4....699***************************..55 PP

                 ...S---EEEEE-SHHHHHHHHHHHHHHHHSHHHHHHTTT...EEEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-SSTGGGS-H CS
     PEPcase 397 egaaelrvvPLfEtvedLknapevleellslplyrelvkksgelqevMlGYSDSnKdaGfltsnWelykaqealvkvaeeagvklrlFHGrGGsvgRGG 495
                 +    + v+PLfEt++dL+na++v+++ll++++yr  +++   +q+vM+GYSDS+KdaG+++++W++y+aq+al k++e+agv+l+lFHGrGG++gRGG
  EHT98957.1 497 A----MPVAPLFETLDDLNNANDVMSKLLNIDWYRGFIQG---KQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGVSLTLFHGRGGTIGRGG 588
                 5....9**********************************...******************************************************** PP

                 HHHHHHHHTS-TTTTTT-EEEEE-GGGHHHHHSSHHHHHHHHHHHHHHHHHHHHS------.HHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHS- CS
     PEPcase 496 gpayeailaqPpgtvngrikiTeQGEviaskyslpelalrnLelvtaavleaslleeaeekkeeweeimeelsevsreaYrklvyeepdfveyFreaTP 594
                 +pa++a+l+qPpg+++g +++TeQGE+i++ky+lpe+++ +L+l+t a+lea+l++++e+k +ew++im++ls+ s++ Yr  v+e++dfv+yFr+aTP
  EHT98957.1 589 APAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTIASLSLYTGAILEANLMPPPEPK-PEWRNIMNQLSADSCAMYRGYVRENKDFVPYFRSATP 686
                 *************************************************************.************************************* PP

                 HHHHHHSS-SSS---------GGSS-HHHHHHHHHHTT--GGGTTTHHHHHHHH..HTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHH CS
     PEPcase 595 ieeiskLnigSRPakRkkkkglesLRAIPWvFsWtqsRlllpaWyGvgtalkevlekeeeklelLremykkwpffrtliskvemvlaKadleiakeYvq 693
                 ++e++kL++gSRPakR+++ g+esLRAIPW+F+Wtq+Rl+lpaW+G+g+al+++    +++ ++L++m+++wpff+t + ++emv++Kadl++a++Y+q
  EHT98957.1 687 EQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQQA--MLAGHQDQLEAMCRDWPFFSTRLGMLEMVFSKADLWLAEYYDQ 783
                 *****************************************************7..778899************************************* PP

                 HHS-GG.GHHHHHHHHHHHHHHHHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TT----HHHHHHHHHHHHHHHHHH- CS
     PEPcase 694 llvdkelrerlfeeireelertvelvleitgqkelldknpvlqrsvelRnayidPlnllQvelLkrlRqaeeekseeeeeellrdallltinGiaaGlr 792
                 +lvdk+ ++ l++++r++l+ ++++vl+i+++++l++++p++++s++lRn y+dPln+lQ+elL+r R++e+  + ee ++++++al++ti+G+aaG+r
  EHT98957.1 784 RLVDKS-LWPLGKQLRDQLDADIKAVLTIANDSHLMADQPWIAESIALRNVYTDPLNVLQAELLHRSRAQEA--RGEEPDARVEQALMVTIAGVAAGMR 879
                 *****9.888************************************************************99..79*********************** PP

                 --- CS
     PEPcase 793 ntG 795
                 ntG
  EHT98957.1 880 NTG 882
                 **9 PP

>> PEPcase_2  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-08     8e-05     171     257 ..     498     589 ..     470     763 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-08
                 SEEEEEE-SHHHHHTHHHHHHHHH.....HHT--SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT-- CS
   PEPcase_2 171 ievIPLiEdkesllnideiveeyv.....kekklkelRvflarSDpAlnyGlisavllvkvAlselykleeelgvkiyPilGvGslpfRGhl 257
                 + v PL+E+ + l n+++++++++     +   + ++ v+++ SD+A + G+++a+ +   A + l+k  e+ gv++    G G +  RG+ 
  EHT98957.1 498 MPVAPLFETLDDLNNANDVMSKLLnidwyRGFIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGVSLTLFHGRGGTIGRGGA 589
                 6699*******************977554555999999**************************************9999999999888875 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2   7.3e+03      39      70 ..      23      51 ..       4      64 .. 0.50
   2 ?   10.7   0.0   6.3e-05      0.38      17      81 ..      74     138 ..      68     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
     DUF4446 39 dgksleellkekleeveelkeeseelekeiee 70
                 ++ l e +  ++e++++l+++s++     ++
  EHT98957.1 23 IKDALGENILGQVETIRKLSKSSRA---GNDT 51
                4445555566666666666666554...2222 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.3e-05
     DUF4446  17 livllvklkklkkkykklmkgkdgksleellkekleeveelkeeseelekeieeleeklkkslqk 81 
                 ++ ++++l+++ ++y+++ +  dg++  ellk+++e++++ + ++++++k ie+l+ +l  + + 
  EHT98957.1  74 AFSQFLNLTNVAEQYQTISRSGDGANHPELLKKTFETLKQNNLSESAIHKAIESLSLELVLTAHP 138
                 6788999**********************************************999887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6287.00
//
Query:       EHT98958.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT98958.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT98958.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT98958.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT98958.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 785.06
//
Query:       EHT98959.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT98959.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1012.76
//
Query:       EHT98960.1  [L=427]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-75  251.6   6.6    1.2e-74  251.4   0.2    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    1.1e-14   54.6   1.5    2.6e-14   53.3   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    6.1e-11   42.9   9.0    1.4e-10   41.8   9.0    1.7  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0088   15.3   1.0      0.018   14.3   1.0    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
  ------ inclusion threshold ------
      0.014   15.7   4.4      0.064   13.6   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.018   15.0   0.3         16    5.5   0.0    3.1  3  UME              UME (NUC010) domain
      0.031   14.6   2.8      0.056   13.7   2.8    1.4  1  Troponin         Troponin
      0.034   13.3   0.4      0.055   12.7   0.4    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.035   13.7   2.8      0.027   14.0   1.0    1.6  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.037   13.8   8.0      0.059   13.1   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.038   12.5   7.5      0.057   12.0   7.5    1.2  1  FUSC             Fusaric acid resistance protein family
      0.088   12.5   2.8       0.25   11.0   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.11   12.3  10.8       0.18   11.6  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.6   1.7        0.8    9.9   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
       0.27   11.3  10.9       0.48   10.5  10.9    1.4  1  DHR10            Designed helical repeat protein 10 domain
       0.32   11.1   5.3        2.7    8.1   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
       0.61    9.3   3.0        0.9    8.7   3.0    1.1  1  TMPIT            TMPIT-like protein
        1.2    8.7   7.9        2.6    7.6   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.2    9.5   6.0       0.25   11.7   2.4    1.8  1  HalX             HalX domain
        3.7    7.9   8.9        7.2    6.9   8.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        5.6    7.7   8.9         10    6.8   1.9    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.0     0.081        69     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  251.4   0.2   1.4e-77   1.2e-74       2     236 ..     187     427 .]     186     427 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.081
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT98960.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 251.4 bits;  conditional E-value: 1.4e-77
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT98960.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT98960.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllk 236
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk
    EHT98960.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLK 427
                   4479*****************************************985 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   1.5   3.1e-17   2.6e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 3.1e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT98960.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   9.0   1.6e-13   1.4e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.6e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT98960.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.0   2.1e-05     0.018      47     106 ..      34      90 ..      25     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT98960.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   7.5e-05     0.064      22      56 ..      23      57 ..      10      71 .. 0.82
   2 ?    3.2   0.4      0.13   1.1e+02      33      53 ..      71      91 ..      68      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT98960.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.13
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT98960.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.9   1.6e+03      26      54 ..      16      44 ..       8      57 .. 0.77
   2 ?    5.5   0.0     0.018        16      15      54 ..      64     103 ..      58     124 .. 0.81
   3 ?    5.4   0.0     0.019        17       9      40 ..     341     372 ..     339     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT98960.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                78999999999999999999888776655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.018
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT98960.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 566555554.888888889999458***************8 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.019
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT98960.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.8   6.6e-05     0.056      46     120 ..       9      97 ..       3     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT98960.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666666 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   6.5e-05     0.055      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.5e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT98960.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.0   3.2e-05     0.027     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.8   0.0       2.1   1.8e+03     125     145 ..     351     371 ..     347     420 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT98960.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999554331...222222 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael 145
                   d+ a TPt +   +++++ +l
    EHT98960.1 351 DVHARTPTDITTEALKRIGKL 371
                   788999999999888776666 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   8.0   6.9e-05     0.059     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT98960.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   7.5   6.7e-05     0.057     213     295 ..       4      92 ..       1     124 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT98960.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996677888888888888888888887766441 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00029      0.25     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.8   0.2       0.2   1.7e+02      97     130 ..      63      96 ..      60     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT98960.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.2
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +a+e +++l++e+ ++l +  
  EHT98960.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5677888888999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.8   0.00021      0.18      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT98960.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00093       0.8      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.1   0.1       1.3   1.1e+03       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00093
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT98960.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT98960.1 167 ACCSCDHI 174
                  35555555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.9   0.00056      0.48      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00056
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT98960.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0031       2.7      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.7   1.2     0.075        64      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0031
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT98960.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.075
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT98960.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.0     0.001       0.9      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT98960.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.9     0.003       2.6      70     153 ..      13      98 ..       2     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.003
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT98960.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.4    0.0003      0.25       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0003
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT98960.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.9    0.0084       7.2       9      86 ..      14      95 ..      10     109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0084
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT98960.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                56777778888899999999*********************966655.23466666666668888887777444444555444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.9     0.012        10      22      53 ..      12      43 ..       8      63 .. 0.87
   2 ?    2.8   1.7      0.21   1.8e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT98960.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.21
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT98960.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1588  (0.0885716); expected 358.6 (0.02)
Passed bias filter:                     1066  (0.0594567); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 3326.40
//
Query:       EHT98961.1  [L=199]
Description: stationary-phase protein, cell division [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-17   62.1   0.0    1.2e-16   61.4   0.0    1.4  1  Fic       Fic/DOC family


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   6.6e-21   1.2e-16       5      96 ..      57     152 ..      53     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 6.6e-21
                 HHHHHHHCHS-S------TS--SS-ST..EEEE---SCCCHHHHHHHHHHHHC......HHT-S-HHHHHHHHHHHHHHH--SSS-HHHHHHHHHHHH CS
         Fic   5 edllelhrlllqdigeeagefrdeevsegklesalappeevpaeleelleyln......elekeeplekaaalhyefekiHPFaDGNgRtarlllnll 96 
                  +l+++hr+l+qd++++age+r+ ++   + e+ +++ e +++e + l++ l+      +l  +e+++++a+++ e++++HPF++GNgR +r+++++l
  EHT98961.1  57 PYLCHIHRTLFQDVYSWAGELRTLDI--WRDETPFCHFEYIEKEGNALMAALEeenglaDLPLAEFAKRVAWYYCEINMLHPFREGNGRAQRIFFEQL 152
                 589********************888..999********************99877676666677*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1598.55
//
Query:       EHT98962.1  [L=56]
Description: hypothetical protein CKS_5769 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-26   90.9   1.1    4.4e-26   90.7   1.1    1.0  1  DUF2559   Protein of unknown function (DUF2559)


Domain annotation for each model (and alignments):
>> DUF2559  Protein of unknown function (DUF2559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   1.1   2.5e-30   4.4e-26       3      52 ..       5      54 ..       3      55 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 2.5e-30
                HCHHHHHHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHHHHHHHHH CS
     DUF2559  3 LTdkQksrLweqrrnanFqaSrrLeGlevplvtltaeealaRLeeLRrhY 52
                LTdkQk++Lw+qrrna+++aS+rLeG++++++++++eea+aRL++LRr+Y
  EHT98962.1  5 LTDKQKAALWRQRRNASYRASCRLEGFTLTEPEVKGEEAEARLASLRRQY 54
                9************************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 500.39
//
Query:       EHT98963.1  [L=190]
Description: peptidyl-prolyl cis-trans isomerase A (rotamase A) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-48  165.2   0.7    1.6e-48  165.0   0.7    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.7   8.7e-53   1.6e-48       2     158 .]      31     188 ..      30     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 8.7e-53
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkhkrGalamartg 97 
                    v ++ts +G+i++eL+++kaP+ v+nF+++v++gfY++t+FhRvi+gfm+qgG +t++++    +k++++   +i++E ++ l++ rG+++mart 
     EHT98963.1  31 VLLTTS-AGNIELELNNQKAPISVKNFVDYVNSGFYNNTIFHRVIPGFMIQGGGFTNEMQ----QKQTNA---PIKNEADNGLRNLRGTISMART- 117
                    668895.***********************************************888744....333454...8*********************. PP

  Pro_isomerase  98 kepnsagsqFfItlkeaphldg.....kytvFGkVveGmdvvekiekvetde.....erpkknvkivsaev 158
                    ++++sa+sqFf++++++ +ld+     +y+vFGk+v+G+dvv+ki++v+t++     + p+k+v+i sa+v
     EHT98963.1 118 SDKDSATSQFFLNVADNAFLDHgqrdfGYAVFGKIVKGQDVVDKISQVPTKDvgpyqNVPVKPVVILSAKV 188
                    79************************************************998899889999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1778.69
//
Query:       EHT98964.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT98964.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT98964.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT98964.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT98964.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT98964.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT98964.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT98964.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT98964.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT98964.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT98964.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT98964.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT98964.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT98964.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT98964.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT98964.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT98964.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT98964.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 2781.65
//
Query:       EHT98965.1  [L=392]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-25   88.7  53.3    2.1e-24   86.1  44.9    2.0  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.43   10.4   0.1       0.43   10.4   0.1    3.3  4  Phage_holin_2_3  Bacteriophage holin family HP1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1  44.9   2.3e-28   2.1e-24       2     326 ..      14     319 ..      10     324 .. 0.85
   2 !    7.7   1.2   0.00017       1.5     121     173 ..     328     380 ..     322     391 .. 0.51

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.3e-28
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +l+++l+++   ++g+++   +a+d++i  +++g  +t+   g ++a+++ ++l+  +  +r l++g++l++l+ +++l++s    ++ ++ ++ G+ +
  EHT98965.1  14 FLSYALTGALVIVTGMVMG-DIAKDFQIPIDSMGNTFTFLNSGILAAVFLNAWLMVIVPLKRQLIFGFVLMVLA-VIGLMTSRDLsVFSLCMFVLGVVS 110
                 6777777788888888888.9*****************************************************.88888888888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                 g+ +++g  li++++ +++rg+ + +  ++fs++  + p+l+g+l+  +l W +v++ ++++++  f++   l++e p+ rk++++ +           
  EHT98965.1 111 GITMSIGTFLITHMYEGRQRGSRLLFTDSFFSMAGTIFPILAGILLaRHLPWYWVYVCIGVIYVGIFIM--TLFVEFPVLRKPENSPTV---------- 197
                 **********************************************9999****************996..555555555555544333.......... PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                 +  k+ +   vl+ l ia+l+  +g  g+ +++p y+ +v+g++    ag l++ ++ + ++++ ++++l++ +       + ++l+ la+++++++  
  EHT98965.1 198 E--KEKWGLGVLL-LAIAALCYILGQLGFISWVPEYATKVMGMN-IDDAGQLVGSFWTAYMVGMWVFSFLLRFFDL---QRILMVLAGLATVLMYWFVS 289
                 4..6666668886.7888888888********************.788888888888888888********87553...44444444444444555555 PP

       MFS_1 297 tssavllllvlvliGfglgfvfpsllalas 326
                 +++a++l ++++++Gf ++ +++++++l s
  EHT98965.1 290 SQDASMLRWIILTLGFSSSAIYTTIITLGS 319
                 5569999999******99999999988765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00017
       MFS_1 121 raigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                 + + ++ ++  +G++l+ ++ + ++ + g +++ + + ++++++f++ +ll +
  EHT98965.1 328 KLVNFILTCGTVGTMLTFVVTSPIVKNSGVHSALLTANGLYAVVFIMCALLGL 380
                 44445555555666666666665555555555555555555555553333333 PP

>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.32   2.9e+03      27      35 ..      24      32 ..      13      34 .. 0.78
   2 ?   10.4   0.1   4.8e-05      0.43      28      49 ..     108     129 ..      83     133 .. 0.76
   3 ?   -3.9   0.1       1.3   1.2e+04      33      43 ..     276     286 ..     275     289 .. 0.76
   4 ?   -2.8   0.4      0.62   5.6e+03      27      40 ..     333     346 ..     305     348 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.32
  Phage_holin_2_3 27 AiviGIicg 35
                     +iv+G+++g
       EHT98965.1 24 VIVTGMVMG 32
                     688888886 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.8e-05
  Phage_holin_2_3  28 iviGIicgvvTfliNwyykrke 49 
                      +v GI ++++Tfli+  y  ++
       EHT98965.1 108 VVSGITMSIGTFLITHMYEGRQ 129
                      599*************998776 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.3
  Phage_holin_2_3  33 icgvvTfliNw 43 
                      + g++T+l+ w
       EHT98965.1 276 LAGLATVLMYW 286
                      56888999877 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.62
  Phage_holin_2_3  27 AiviGIicgvvTfl 40 
                       +  G + +++Tf+
       EHT98965.1 333 ILTCGTVGTMLTFV 346
                      33445555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2606.11
//
Query:       EHT98966.1  [L=427]
Description: cytosine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-53  182.2   0.2    3.7e-52  178.4   0.2    2.0  1  Amidohydro_3  Amidohydrolase family
    2.9e-13   49.9   0.0    3.9e-13   49.4   0.0    1.0  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.2   4.1e-56   3.7e-52       3     472 ..      47     405 ..      45     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 4.1e-56
  Amidohydro_3   3 iDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagttpkgrwivgeGwdeaqfaeerfpyalaeldevledapvllaaldt 99 
                    Da+G+l +++F+++H+Hl++++        +++ ++++ ++++ ++++a++            ++   +e+  ++a++ l++ ++++  +++   t
    EHT98966.1  47 LDAEGGLAYAPFIEPHIHLDTTQ------TAGEPAWNQSGTLFEGIERWAER------------KALLSHEDVKRRAMQTLKWQIANGIQFVR---T 122
                   7********************99......888889*****************............*****************************...* PP

  Amidohydro_3 100 HaavrnsaaldlagiteatpdpaggeilrdangegatgllregafhlvldlaplareaeaaavaaalaalasyGitsveagggnvsslddleplfel 196
                   H++v + ++ +                        ++++l+              ++++a ++  +++a+++ Gi s+                   
    EHT98966.1 123 HVDVSDPTLTA------------------------LKAMLE-------------LKAEMAPWITIQIVAFPQEGILSY------------------- 163
                   *****999999........................799**9.............88**********************................... PP

  Amidohydro_3 197 taeeklplrviikelldaaerlglplspgseeltigavklfadgvlgsrtalltepyftgwpdfedealaelvaaadergldvaihaigdaavd.dv 292
                                              p+ e+l  +a++l+ad+v++++++++t++y         e l++ +a+a+ ++  v++h+++ ++ + ++
    EHT98966.1 164 ---------------------------PNGEALLEEALRLGADVVGAIPHFEFTREYG-------VESLHKAFALANRYDRLVDVHCDEIDDEQsRF 226
                   ...........................899*************************877.......666***************************** PP

  Amidohydro_3 293 ldafeaaaekngnqdrrrlehaegv...tesqiervaalqvaagvqpvfnf.edelldsrlg.perargstpvkellnagvkvalgsDapvgpfdpw 384
                   +++++a a++ g+  r++++h++++   ++++ +r+ +l    g+ +v n+  +++l++r++ ++++rg+t+vkell+a ++v++g+D   ++fdpw
    EHT98966.1 227 VETVAALAHRDGMGARVTASHTTAMhsyNGAYTSRLFRLLKLSGINFVANPlVNIHLQGRFDsYPKRRGITRVKELLEAEINVCFGHD---DVFDPW 320
                   ****************************************************************************************...****** PP

  Amidohydro_3 385 prigaavmrktrrgg.evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld....adpldvdppelaearvrltvvdGrvv 472
                   +++g+ +m++  ++g +v++ +   ++++ l+l+Tr++A +l+l +  ++++ G +A++++l      d+++++ p      vr+ + +G+v+
    EHT98966.1 321 YPLGTGNMLQVLHMGlHVCQLMGYEQINAGLDLITRNSANTLNLAE--YGIQRGHEASFIILPaengFDAVRRQVP------VRYSLRRGKVI 405
                   **********************************************..9**************9888888888888......99999999997 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   4.4e-17   3.9e-13       6     317 ..      58     380 ..      54     405 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 4.4e-17
                   EEEEEEECETTECSSS...........GHHHHH.........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...HHHHHHHHHHTSSSEEEE CS
  Amidohydro_1   6 lIDaHvHleqsllrga...........tledwl.........vppetaaealesgiktalksGtttvadmgattst...giealleaaeelplglri 79 
                   +I  H+Hl  +   g+                +         +++e+++  + + +k  + +G+ +v+ +  + ++   +++a+le   e+      
    EHT98966.1  58 FIEPHIHLDTTQTAGEpawnqsgtlfeG----IerwaerkalLSHEDVKRRAMQTLKWQIANGIQFVRTHVDVSDPtltALKAMLELKAEM------ 144
                   999*****77766666766655554444....05666***********************************9877777888888877774...... PP

                   EEESSEGGS....GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEE CS
  Amidohydro_1  80 lggkvsldr....gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetieh 172
                    +++  +      +++  s  + e+l+++a    +  + +vv ++   ++  +++ e l++a+ +a ++d  v++H+ e + e+      f+et+  
    EHT98966.1 145 -APWITIQIvafpQEGILSYPNGEALLEEA----LRLGADVVGAIPHFEFTREYGVESLHKAFALANRYDRLVDVHCDEIDDEQ----SRFVETVAA 232
                   .45444544555644444555555555555....4455677889999999999************************9999887....555555556 PP

                   ETTTTSTCCHHTTTHCCEEEHCTCEEE.....HHHHHHHHHHHHHHCEE...........HHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECT.... CS
  Amidohydro_1 173 gthlevaeslglldeiklilahgvhlt.....pteaellkerlkeagva...........hcpfsnsilrsgrealrkaldeGvkvglgtDga.... 249
                     h ++++        ++++ h + ++          +l + lk +g++           + +f++   r g+ +++++l++ ++v +g D++    
    EHT98966.1 233 LAHRDGMGA-------RVTASHTTAMHsyngaY--TSRLFRLLKLSGINfvanplvnihlQGRFDSYPKRRGITRVKELLEAEINVCFGHDDVfdpw 320
                   668899887.......88999999999866433..468899999999997777766666555555555***********************999999 PP

                   ...TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEE CS
  Amidohydro_1 250 ...asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvv 317
                      + gn l++l  + + +   +       +g   ++  l++ T n A  l+l+ + G i+ G +A ++++
    EHT98966.1 321 yplGTGNMLQVLHMGLHVC---Q------LMGYEQINAGLDLITRNSANTLNLA-EYG-IQRGHEASFIIL 380
                   8777777776644444444...2......3555667778899***********7.***.***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2950.53
//
Query:       EHT98967.1  [L=334]
Description: tryptophan-tRNA ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-87  293.3   0.0    2.6e-87  292.9   0.0    1.1  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
       0.19   11.4   0.8       0.45   10.2   0.3    1.9  2  Apo-CIII      Apolipoprotein CIII (Apo-CIII)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.9   0.0   2.8e-91   2.6e-87       5     292 ..       3     285 ..       1     286 [. 0.98

  Alignments for each domain:
  == domain 1  score: 292.9 bits;  conditional E-value: 2.8e-91
                   --EEEEEEETSSS-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHHH CS
  tRNA-synt_1b   5 plrvysGidPTgklHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlela 100
                   + +v+sG++P+g+l +G y+++l+++v++q +  +++ +i+DlhAi+++++   +  lrk++ ++ ++   +la+g+dpek+++++qs+++eh++l 
    EHT98967.1   3 KPIVFSGAQPSGELTIGnYMGALRQWVQMQ-DDFHCIYCIVDLHAITVRQD---PVALRKATLDTLAL---YLACGIDPEKSTIFVQSHVPEHTQLS 92 
                   5689**************************.********************...**************...************************** PP

                   HHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH..STTSS-EEEEET....-B CS
  tRNA-synt_1b 101 ellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk..evfkkpegltvp....ll 191
                   ++l++ + +g+l+rm+qfk+ ++r+ee  +i++g+f+Yp+L+aaDill+++  vp+G+DQkq++el rd+a rfn    ++fk pe+++++    ++
    EHT98967.1  93 WILNCYTYFGELSRMTQFKDKSSRYEE--NINAGLFSYPVLMAADILLYQTAQVPVGEDQKQHLELSRDIASRFNALygDIFKVPEPFIPKsgarVM 187
                   ********************8888888..8******************************************************************* PP

                   BSTTSSSBTTCETTC..GC-BTTCCHHHHHHHHHHCHCSTTC..SHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHH CS
  tRNA-synt_1b 192 tgldGekKmSKSagn..saIfLddekesvkkkiqkavtdsde..evekllklktelsnelierleavsgkkpkreaeellaeevtklvhggdlkkal 284
                   ++l+++kKmSKS++n  ++I L+++++sv+kki++a+tds+e   ++++ k+k ++sn l+++l+ v+g+       +l+++++ k  ++g+lk a+
    EHT98967.1 188 SLLEPTKKMSKSDDNrnNVIGLLEDPKSVVKKIKRAMTDSEEppVIRYDIKEKAGVSN-LLDILSGVTGTPV----TTLEQAFEGK--MYGHLKGAV 277
                   **********************************************************.**********887....**********..9******** PP

                   HHHHHHHH CS
  tRNA-synt_1b 285 aealnell 292
                   aea+  +l
    EHT98967.1 278 AEAVSGML 285
                   ***99887 PP

>> Apo-CIII  Apolipoprotein CIII (Apo-CIII)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.6   5.4e+03      11      31 ..     269     290 ..     263     291 .. 0.59
   2 ?   10.2   0.3     5e-05      0.45       4      31 ..     298     326 ..     296     328 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.6
    Apo-CIII  11 mqgYvqqA.sktaqdaLtsvqe 31 
                 m g ++ A +  +  +Lt +qe
  EHT98967.1 269 MYGHLKGAvAEAVSGMLTDLQE 290
                 5555555512335678888887 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5e-05
    Apo-CIII   4 dasLLg.vmqgYvqqAsktaqdaLtsvqe 31 
                 d++LL+ vm++  q+A  +aq++L +v e
  EHT98967.1 298 DEALLEkVMRDGAQKARAQAQETLKKVYE 326
                 66777659******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2500.29
//
Query:       EHT98968.1  [L=225]
Description: phosphoglycolate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-31  109.5   0.0    2.4e-31  109.2   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.1e-21   78.1   0.0    2.3e-21   77.0   0.0    1.5  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.2e-12   47.3   0.0    4.2e-12   46.9   0.0    1.2  1  HAD             haloacid dehalogenase-like hydrolase
    8.2e-08   32.2   0.0    2.1e-07   30.9   0.0    1.7  2  Hydrolase_like  HAD-hyrolase-like
    4.9e-06   26.5   0.2       0.07   12.9   0.0    3.0  3  Hydrolase_3     haloacid dehalogenase-like hydrolase
    1.2e-05   25.4   0.0    8.4e-05   22.6   0.0    2.0  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.15   11.6   0.1       0.74    9.3   0.0    1.9  2  S6PP            Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   9.3e-35   2.4e-31       3     176 ..      12     192 ..      10     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 9.3e-35
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee.......kieellrkyneekkkkevkpydgvkelLeeLkea 94 
                 FDlDgTl+d+ + +++a+  +l++  l+      +++ ig   + ++ ++       e       +   l++k++++  +   +++++vke+L  L++ 
  EHT98968.1  12 FDLDGTLVDSAPGLADAIDLTLADLALPAAGVARVSTWIGNGADVMMCRALTWALGREphpdeqrDARVLFDKHYASTVEAGSTLFPQVKETLTRLQAT 110
                 ******************************************998876655433333346667888999999999999999****************** PP

       HAD_2  95 gyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 g+ ++ivT+k +  v   l+ lgi++ F+ i++++dv  kKP+p+ i  +l k +l +++ ++vGDs +Di aa+ ag+  +
  EHT98968.1 111 GMPMAIVTNKPTPFVAPLLQSLGIDQAFSLIIGGDDVVVKKPHPAAIFLVLGKWGLLPSQLLFVGDSRNDILAAQSAGVPNV 192
                 ******************************************************************************9765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   9.1e-25   2.3e-21       1     210 []       7     188 ..       7     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 9.1e-25
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrgayaigkpewltaldippdlgaaigsaqsqgr 98 
                 i+ ++fD+dGTL+++ p + d+i+                        a  a++ a  +++ t ig+ga  +  + ++ al      ++   ++q+++r
  EHT98968.1   7 IRGLAFDLDGTLVDSAPGLADAIDLT---------------------LADLALPAAGvARVSTWIGNGADVMMCRALTWAL-----GREPHPDEQRDAR 79 
                 6789**********************.....................6666665555599999888885555555555555.....2344444444444 PP

                 HHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  99 tvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamV 196
                   + +  ++   +++  +  ++p ++e++ +L+a g +++++t+    ++  +++ lG d++f+ +i++d+++v+kp+p +   ++ + +  p++ ++V
  EHT98968.1  80 VLFDK--HYASTVEAGST--LFPQVKETLTRLQATGMPMAIVTNKPTPFVAPLLQSLGiDQAFSLIIGGDDVVVKKPHPAAIFLVLGKWGLLPSQLLFV 174
                 44444..77777777777..******************************************************************************* PP

                 ESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxx RF
   Hydrolase 197 GDgvnDaaalaaAg 210
                 GD+ nD+ a++ Ag
  EHT98968.1 175 GDSRNDILAAQSAG 188
                 ***********998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.6e-15   4.2e-12       2     188 .]      11     185 ..      10     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.6e-15
         HAD   2 lfDfDgTLldgdsle.lllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpk......lldpgale 92 
                  fD+DgTL+d+ ++    ++  l+  a++++  +r+ ++          d  ++++l +a l++ + ++  ++++ +++++++        l+ p+++e
  EHT98968.1  11 AFDLDGTLVDSAPGLaDAIDLTLADLALPAAGVARVSTWIGN-----GADVMMCRALTWA-LGREPhPDEQRDARVLFDKHYASTveagstLF-PQVKE 102
                 6**********6666577777888888888888888877777.....3333455666665.44444466677777777555554455557555.***** PP

         HAD  93 llaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                  l + +a G + ++v++ + p+v pll+ lg    ++        ++  +g+++ +v++   +aa+       ++g+ ++ + ++GDs++D+ +++
  EHT98968.1 103 TLTRLQATGMPMAIVTNKPTPFVAPLLQSLG----IDQ------AFSLIIGGDDVVVKK-PHPAAIFL--VLGKWGLLPSQLLFVGDSRNDILAAQ 185
                 ***999*************************....999......899998888888888.44445555..77788999999***********9986 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.2   5.6e+03       3      28 ..     119     143 ..     117     145 .. 0.64
   2 !   30.9   0.0   8.3e-11   2.1e-07       2      75 .]     149     219 ..     148     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.2
                     STTSSHHHHHHHHHH---GGGEEEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiG 28 
                      KP+p++    l+ lg+d + +l+iG
      EHT98968.1 119 NKPTPFV-APLLQSLGIDQAFSLIIG 143
                     5888654.446666777777777776 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 8.3e-11
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlaea 75 
                     + KP+p ++   l + g+ p++ l++GD+ + Di++A+ aG+  v  + G +  e  +    +p+  +d+++e+
      EHT98968.1 149 VKKPHPAAIFLVLGKWGLLPSQLLFVGDS-RNDILAAQSAGVPNVGMTFGYNYGEPIA--SSQPDLTLDSFDEL 219
                     58***************************.********************98888866..56899999999885 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.5    0.0031       7.8       1      13 [.      10      22 ..      10      37 .. 0.81
   2 !   12.9   0.0   2.7e-05      0.07      16      58 ..      96     138 ..      89     145 .. 0.87
   3 ?    3.6   0.0     0.018        46     197     217 ..     162     182 ..     155     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
                 EEEEIIIIIS-TT CS
  Hydrolase_3  1 ialDlDGTLlnsd 13
                 +a+DlDGTL++s 
   EHT98968.1 10 LAFDLDGTLVDSA 22
                 69********986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.7e-05
                  --HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  16 isektkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                  + ++ ke++ +l++ g+  +i T  ++ +v p+l++lg+d+++
   EHT98968.1  96 LFPQVKETLTRLQATGMPMAIVTNKPTPFVAPLLQSLGIDQAF 138
                  56899**********************************9654 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.018
                  HHCT--GGGEEEEESSGGGHH CS
  Hydrolase_3 197 kelnisleeviafGDgeNDie 217
                   ++++ +++ + +GD+ NDi 
   EHT98968.1 162 GKWGLLPSQLLFVGDSRNDIL 182
                  567888999**********96 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.3e-08   8.4e-05       2      57 ..      11     135 ..      10     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.3e-08
                  EEESTTTSE........................................................................ETTEE-TTHHHHHHHHH CS
  Hydrolase_6   2 lfDidGvLw........................................................................rgdkaipgaaealnalr 27 
                  +fD+dG+L+                                                                         g++++p+++e+l++l+
   EHT98968.1  11 AFDLDGTLVdsapgladaidltladlalpaagvarvstwigngadvmmcraltwalgrephpdeqrdarvlfdkhyastveAGSTLFPQVKETLTRLQ 108
                  6899999999999999999999999999999999999999999999999999999999999999999999999888888888**************** PP

                  HTT-EEEEEE---SS-HHHHHHHHHHTT-- CS
  Hydrolase_6  28 aagkpvvllTNnsskseeeyakkleklgvd 57 
                  a+g+p++++TN+ +     +a  l++lg+d
   EHT98968.1 109 ATGMPMAIVTNKPTPF---VAPLLQSLGID 135
                  ***********87654...55555666665 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.27   6.9e+02       5      16 ..      10      21 ..       8      35 .. 0.77
   2 ?    9.3   0.0   0.00029      0.74     169     195 ..     156     182 ..     145     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.27
                EEE-TBTTTB.S CS
        S6PP  5 lvsdLDntlvdg 16
                l+ dLD+tlvd+
  EHT98968.1 10 LAFDLDGTLVDS 21
                688*******43 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00029
                 HHHHHHHHHT--GGGEEEEE-SGGGHH CS
        S6PP 169 AlryLakkleleleqilvcGdsgnDee 195
                 A+   + k++l ++q+l++Gds nD+ 
  EHT98968.1 156 AIFLVLGKWGLLPSQLLFVGDSRNDIL 182
                 5666688******************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1744.46
//
Query:       EHT98969.1  [L=227]
Description: D-ribulose-5-phosphate 3-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-90  299.9   0.0    7.1e-90  299.7   0.0    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
    7.3e-06   25.9   0.0    0.00029   20.7   0.0    2.2  2  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter
  ------ inclusion threshold ------
      0.028   13.9   0.0      0.047   13.2   0.0    1.3  1  His_biosynth    Histidine biosynthesis protein
      0.033   13.2   1.7       0.36    9.8   0.1    2.2  2  FMN_dh          FMN-dependent dehydrogenase
      0.037   14.6   0.0       0.16   12.6   0.0    2.0  2  PGM_PMM_II      Phosphoglucomutase/phosphomannomutase, alpha/
      0.083   12.2   0.0       0.18   11.1   0.0    1.6  1  TMP-TENI        Thiamine monophosphate synthase
      0.099   13.0   0.0        3.9    7.8   0.0    2.4  2  Radical_SAM     Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.7   0.0   2.8e-93   7.1e-90       2     198 .]       6     203 ..       5     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 299.7 bits;  conditional E-value: 2.8e-93
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGG.E-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-TTHH CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkl.telpldvHLmveevdrivpefaeagasiisvHaEalehlk 95 
                     +apS+lsadfarlge+ +++ +ag d++H+DvmD+h+vpNlt+gp+v++alr++ +++p+dvHLmv++vd+++pefa+aga++i++H+Ea+eh++
      EHT98969.1   6 LAPSILSADFARLGEDTAKALAAGGDVVHFDVMDNHYVPNLTMGPMVLKALRDYgITAPIDVHLMVKPVDALIPEFAKAGATYITFHPEASEHVD 100
                     79****************************************************989************************************** PP

                     HHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--E CS
  Ribul_P_3_epim  96 rtiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadv 190
                     rt+q ike+G+kaglv+npatpl++l+y+++kld++llmsv+PgfgGQ+Fip +l+k++++rk+id++++++++evDGGvk dni+qia+agad+
      EHT98969.1 101 RTLQLIKEHGCKAGLVFNPATPLSYLDYVMDKLDIILLMSVNPGFGGQSFIPGTLDKLREARKRIDQSGYSIRLEVDGGVKIDNIAQIAAAGADM 195
                     *********************************************************************************************** PP

                     EEESHHHH CS
  Ribul_P_3_epim 191 lVagsavf 198
                     +Vagsa+f
      EHT98969.1 196 FVAGSAIF 203
                     *******9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.025        63      91     112 ..      20      41 ..      16     104 .. 0.88
   2 !   20.7   0.0   1.1e-07   0.00029     110     158 ..     154     202 ..     125     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.025
                 HHHHHHHHHT-SEEEEES--HH CS
   QRPTase_C  91 eeleevleaeadiimLDnfsve 112
                 e++ ++l+a+ d++ +D ++ +
  EHT98969.1  20 EDTAKALAAGGDVVHFDVMDNH 41 
                 78999************99765 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.1e-07
                 -HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHC CS
   QRPTase_C 110 sveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalt 158
                 + ++l++a +++++   ++++ev Ggv+ +n++++a  g d++  g+++
  EHT98969.1 154 TLDKLREARKRIDQSGYSIRLEVDGGVKIDNIAQIAAAGADMFVAGSAI 202
                 668999999999999999**************************99987 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.047      72     113 ..     170     210 ..     154     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
                   -SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHH CS
  His_biosynth  72 vfipvqvGGGIrsledveelleagadkviigtaavknpelik 113
                    +i ++v+GG++  + ++++  agad  + g+a + +p++ k
    EHT98969.1 170 YSIRLEVDGGVKIDN-IAQIAAAGADMFVAGSAIFGHPDYKK 210
                   4699*******9766.*******************9998644 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.028        71     281     297 ..      17      33 ..      15      35 .. 0.90
   2 ?    9.8   0.1   0.00014      0.36     253     328 ..     150     221 ..     146     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.028
                 -SHHHHHHHHHTT-SEE CS
      FMN_dh 281 rrGsDvlkAlalGAdav 297
                 r G+D +kAla G d+v
  EHT98969.1  17 RLGEDTAKALAAGGDVV 33 
                 679**********9998 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
                 T---HHHCHHHHHHHH.....SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 253 gapatidvLpeiveavgg...rievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraeler 328
                 + p t+d L e ++++++   +i + vDgG++    +++  a GAd+ + G ++       G+   ++v++ +r+ele+
  EHT98969.1 150 FIPGTLDKLREARKRIDQsgySIRLEVDGGVKI-DNIAQIAAAGADMFVAGSAI------FGHPDYKKVIDDMRNELEK 221
                 5689**********99977778********987.67**********97766554......7788888888888888876 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-05      0.16      37      91 ..      53     119 ..      47     121 .. 0.65
   2 ?   -1.0   0.0       1.1   2.8e+03      54      91 ..     141     178 ..     125     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
                 HHHHHHTT-..............EEEES-----TT-TT.....SS----TT-TTTTHHHHGGGGG-SEEEEE-T CS
  PGM_PMM_II  37 kellkelgv..............dvvelnaepdpdfpt.....kapnpeekealkllielvkkegadlglafDg 91 
                  ++l+++g+               ++++ a       +      + +pe++e++++  +l+k++g+++gl+f +
  EHT98969.1  53 LKALRDYGItapidvhlmvkpvdALIPEFA-------KagatyITFHPEASEHVDRTLQLIKEHGCKAGLVFNP 119
                 566666666666533332222222222333.......144445568999999*******************988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                 --TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-T CS
  PGM_PMM_II  54 pdpdfptkapnpeekealkllielvkkegadlglafDg 91 
                  +p f++++  p   + l+++ + ++++g+++ l +Dg
  EHT98969.1 141 VNPGFGGQSFIPGTLDKLREARKRIDQSGYSIRLEVDG 178
                 56677776666666678888889999999888888777 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.9e-05      0.18     137     181 .]     153     202 ..     127     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.9e-05
    TMP-TENI 137 lgleglkelaeale.....iPvvaiGGitlenvaevleagadgvavvsai 181
                   l++l+e+++++      i + + GG++ +n+a++++agad+    sai
  EHT98969.1 153 GTLDKLREARKRIDqsgysIRLEVDGGVKIDNIAQIAAAGADMFVAGSAI 202
                 5678888888888888888999999*****************99988887 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.011        28      77     143 ..      32     112 ..      10     119 .. 0.69
   2 ?    7.8   0.0    0.0015       3.9      32     108 ..      97     199 ..      94     221 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
                  TEEEEEEECSSCHG....HHHHHHHHHTT...-SEEEEEEBSSSHHHHHHHHTCTSHH........HHHHHHHHHHHHTTSE CS
                  xxxxxxxxxxxxxx....xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx RF
  Radical_SAM  77 giritvetngtlpd....eeklerllelg...vdrvslgleaaddekvlklmnrghtf........eevlealeklreagik 143
                   +++ v  n+++p+    + +l++l+++g   +  v+l ++ +d   + +  + g t+        e+v ++l++++e+g+k
   EHT98969.1  32 VVHFDVMDNHYVPNltmgPMVLKALRDYGitaPIDVHLMVKPVDAL-IPEFAKAGATYitfhpeasEHVDRTLQLIKEHGCK 112
                  4444444444444455559999999999988877888888888887.77777666666777888889999999999998888 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
                  HHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC...........................CCTEEEEEEECSSCHGHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  32 eeileevkelkaekg.vkevilgggepllypdfvellerlakla...........................vpgiritvetngtlpdeeklerllelg 101
                  e + + ++ + +e+g + ++++   +pl y d+v++ + ++ l                             +g++i++e+ g++   + ++ ++ +g
   EHT98969.1  97 EHVDRTLQLI-KEHGcKAGLVFNPATPLSYLDYVMDKLDIILLMsvnpgfggqsfipgtldklrearkridQSGYSIRLEVDGGVK-IDNIAQIAAAG 192
                  5667777778.57777888999999999997777777777777777777777777777777777777777899************8.9*******999 PP

                  -SEEEEE CS
                  xxxxxxx RF
  Radical_SAM 102 vdrvslg 108
                   d +  g
   EHT98969.1 193 ADMFVAG 199
                  7776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1773.74
//
Query:       EHT98970.1  [L=270]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-74  250.1   0.1    3.1e-74  250.0   0.1    1.0  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   0.1   1.7e-78   3.1e-74       1     260 []      10     252 ..      10     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 250.0 bits;  conditional E-value: 1.7e-78
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelre 94 
                      ++GgK  l++eI +++p  +g++++epF+G+g+Vf+++  ++ ++ ++Din+dlinly+ ++k+++ ++i +++  l+ +e +n++  +y+lr+
       EHT98970.1  10 WAGGKFPLVEEIHRHLP--QGDCLIEPFVGAGSVFLNT--DFDRYHLADINNDLINLYN-IVKTRTADFIRDARL-LFTSE-TNSEIRYYQLRT 96 
                      9****************..899****************..*******************.**************6.55645.48********** PP

                      HHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T CS
  MethyltransfD12  95 efnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPPYn 188
                      efn    +++  ++a++flylnr++++gl+r+n +g+fnvp+g+y+kp +++e+el +++e++++a++ c+++d +l++a++++ +vY+DPPY+
       EHT98970.1  97 EFN---LSHDAYQRALLFLYLNRHCYNGLCRYNLRGEFNVPFGRYRKP-YFPEAELLWFAERAQKATFVCESYDVTLNNAQKGS-VVYCDPPYA 185
                      ***...9*****************************************.*******************************8888.********* PP

                      .S...TS--GGGG.CS-HHHHHHHHHHHHHH.HHTT-EEEEEEESEESHHHHHHCTT...SEEEEECCCCHH CS
  MethyltransfD12 189 prqytanytlyetlafsdedevrlaevlkslsskfgvkvllsnsfkdtklfrelyksYnnesileveelrai 260
                      p++ tan+t y+t++fs +++++la+++++l s+++++vl+sn+  dt+l+r +y++   + +++v+ +r+i
       EHT98970.1 186 PLSATANFTAYHTNSFSLHEQQHLAQLAAKLASESQIPVLISNH--DTELTRCWYQD---AVLHVVKVRRSI 252
                      ********************************************..***********...999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2144.61
//
Query:       EHT98971.1  [L=351]
Description: DamX family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-10   41.7   0.3    2.1e-10   40.8   0.3    1.5  1  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.3   1.2e-14   2.1e-10       2      75 ..     267     340 ..     266     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.2e-14
                 TTBB--BS-EES-HHHHHHHHHHCCHHT--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCH.HHHTTS--B- CS
        SPOR   2 sggytvQvgafsseanAerlaakLrakgfaaavavvsgggglyrVrvGpfasreeAqaalkkLk.aaagisafvv 75 
                 +g+yt+Q+   s  ++ +++a+k +   ++++ +++++g+++y ++ G +a+ ++A++a + L+ +++ ++++v 
  EHT98971.1 267 GGNYTLQLSGASKAESLNAWAKKQNLSAYHVY-KTTRNGQPWYVLVSGSYATPADAKRAVATLPaEVRAQNPWVK 340
                 79****************************99.********************************999*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2692.39
//
Query:       EHT98972.1  [L=362]
Description: 3-dehydroquinate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-109  365.0   0.0   2.2e-109  364.7   0.0    1.1  1  DHQ_synthase  3-dehydroquinate synthase
    8.7e-14   51.8   0.7    9.7e-13   48.4   0.7    2.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    3.7e-09   35.9   2.9      2e-08   33.4   0.2    2.1  2  Fe-ADH        Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.7   0.0  3.7e-113  2.2e-109       2     261 ..      67     325 ..      66     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 364.7 bits;  conditional E-value: 3.7e-113
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   +++pdge++K+l+ + +++++ll++ + R+++l+alGGGv+gDl+Gf+Aa y+RGvrf+qvPttll+qvDssvGgKta+n+plgKN+iGaf+qP  v
    EHT98972.1  67 VILPDGEQHKTLAVMDQVFTTLLQKPHGRDTTLVALGGGVIGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASV 163
                   789********************************************************************************************** PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHHHHTT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallkeeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEallgy 195
                   +id+e+L++Lp+rel++GlaEviKy++i d e+f++le+n ++ll+  +e+al+ +i+r++e+kaevv++De+e+g+ralLnlGHt+gHaiEa++gy
    EHT98972.1 164 VIDTECLRSLPPRELASGLAEVIKYGIILDGEFFHWLEQNLDRLLAL-DEAALAWCIRRCCELKAEVVAADERENGQRALLNLGHTFGHAIEAHMGY 259
                   ********************************************996.9************************************************ PP

                   TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT.-HHHHHHHHTTCTTX CS
  DHQ_synthase 196 ekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkelleveellealkkDkkv 261
                   +++lHGea+a+Gmv+aa+++++lg ++++++er+++ll+++glpv+ + ++++e++l ++++Dkkv
    EHT98972.1 260 GNWLHGEAIAAGMVMAARTAQRLGQFSEQDCERVIALLQRAGLPVHGPVEMQAEDYLPHMMRDKKV 325
                   *****************************************************************7 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.7   1.6e-16   9.7e-13       8     175 ..      23     198 ..      16     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.6e-16
    Fe-ADH_2   8 eklgellkelelkkvllvadentkkaagekveeslkeagikve..vveeveeeadleeveklveal...reketdlvvavGgGtiiDiakyv..sakln 99 
                 ++ +++   +++++++lv++e+   ++ +kv+  lk ag+k++  ++ + e++++l  + ++ + l    + + + +va+GgG+i D++ ++  s++++
  EHT98972.1  23 NDPASFWPLKAGDNAMLVTNETLAPLYLDKVTARLKAAGVKTDqvILPDGEQHKTLAVMDQVFTTLlqkPHGRDTTLVALGGGVIGDLTGFAaaSYQRG 121
                 555556666778899*************************9976667777888888777777777754322344589************9862268999 PP

    Fe-ADH_2 100 vpyvsvpTaa......SvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklan 175
                 v+++ vpT++      Sv G ++++ +l ++     +     P+ v++D++ l+  P r lasG+++++ ky  + d +  +
  EHT98972.1 122 VRFIQVPTTLlsqvdsSVGGKTAVNHPLGKNM----IGAFYQPASVVIDTECLRSLPPRELASGLAEVI-KYGIILDGEFFH 198
                 ********974444446677777777776664....334457*************************99.566555555444 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2   3.4e-12     2e-08      21     187 ..      33     184 ..      29     189 .. 0.82
   2 !    2.6   0.3     0.008        48     251     327 ..     242     304 ..     236     323 .. 0.64

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.4e-12
                 T-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEE..E.EEE-S---HHHHHHHHTTS..-TT.--E.EEEEESHHHHHHHHHHHHHTT......... CS
      Fe-ADH  21 lgakralivtdkgslkksglldkvlesleeagievt..vfdgvepnptleeveeaaala..reegadv.viavGGGsviDtAKaialllanpevedylg 114
                 +g ++a++vt + ++    +ldkv++ l++ag++ +  +  + e++ tl+ ++++   +  + +g d+ ++a+GGG   D+   +a+ +++        
  EHT98972.1  33 AG-DNAMLVTNETLA--PLYLDKVTARLKAAGVKTDqvILPDGEQHKTLAVMDQVFTTLlqKPHGRDTtLVALGGGVIGDLTGFAAASYQR-------- 120
                 56.79********87..559**************998789999************99883344455556*********************5........ PP

                 .........--EEEEESS-S-S-TT-SEEEEE.-TTS.EEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHH CS
      Fe-ADH 115 egkakkkkalpliaiPTtaGtGsevtplavitdeeeg.eklsifdpellPdlaivDpeltltlPkrvtaatglD 187
                         ++++i +PTt    s+v +        ++   + +   +  P+ +++D+e + +lP+r +a++ + 
  EHT98972.1 121 --------GVRFIQVPTTL--LSQVDSSVGGKTAVNHpLGKNMIGAFYQPASVVIDTECLRSLPPRELASGLAE 184
                 ........59********8..555555555553333334455555799*********************99876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.008
                 ---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHHHHHT.......T--HHHHHHHHHHHHHTT--- CS
      Fe-ADH 251 glgavHalahalgalfgiphglanaillpavlrfnaeaaperlaqlaralggesdeeaaeeliealrellkelglpt 327
                  l++ H ++ha+ a++g     +++++ +a++ +         a+ a+ lg     +  e+ +e++++ll++ glp+
  EHT98972.1 242 LLNLGHTFGHAIEAHMGY-GNWLHGEAIAAGMVM--------AARTAQRLG-----QFSEQDCERVIALLQRAGLPV 304
                 566777777777774443.445566666666622........344555543.....345667888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2849.47
//
Query:       EHT98973.1  [L=173]
Description: shikimate kinase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-56  191.1   0.6    1.5e-56  190.9   0.6    1.0  1  SKI              Shikimate kinase
    3.6e-09   36.9   0.1    2.7e-06   27.6   0.0    2.1  2  AAA_33           AAA domain
    5.1e-07   30.3   0.0      8e-07   29.7   0.0    1.4  1  AAA_18           AAA domain
    3.5e-06   26.9   0.6    4.7e-05   23.2   0.0    2.5  3  Cytidylate_kin   Cytidylate kinase
    1.8e-05   24.7   0.0      0.015   15.1   0.0    2.2  2  dNK              Deoxynucleoside kinase
    3.6e-05   24.0   0.1    0.00099   19.3   0.1    2.4  2  Cytidylate_kin2  Cytidylate kinase-like family
    0.00048   20.6   0.0     0.0012   19.2   0.0    1.8  2  AAA              ATPase family associated with various cellul
    0.00092   19.6   0.2     0.0024   18.3   0.2    1.9  1  AAA_16           AAA ATPase domain
     0.0015   18.8   0.0     0.0021   18.3   0.0    1.5  1  AAA_22           AAA domain
      0.002   18.1   0.0     0.0045   17.0   0.0    1.6  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0034   17.9   0.2      0.011   16.3   0.2    1.9  1  ABC_tran         ABC transporter
     0.0058   16.5   0.1      0.014   15.3   0.1    1.7  1  APS_kinase       Adenylylsulphate kinase
     0.0059   16.6   0.0      0.015   15.3   0.0    1.6  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0071   15.9   0.0      0.015   14.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.018   15.0   0.0    1.3  1  Ploopntkinase3   P-loop Nucleotide Kinase3
      0.011   15.3   0.2      0.029   13.9   0.2    1.8  1  AAA_25           AAA domain
      0.012   16.1   2.3       0.11   12.9   0.5    2.9  2  AAA_17           AAA domain
      0.013   15.2   0.0      0.018   14.8   0.0    1.3  1  AAA_24           AAA domain
      0.017   15.4   0.0       0.14   12.4   0.0    2.2  2  AAA_28           AAA domain
      0.018   15.4   0.0      0.033   14.6   0.0    1.6  1  RNA_helicase     RNA helicase
      0.024   13.6   0.0      0.047   12.6   0.0    1.5  1  AAA_PrkA         PrkA AAA domain
      0.033   13.6   0.1      0.033   13.6   0.1    1.2  1  His_biosynth     Histidine biosynthesis protein
      0.042   13.6   0.0      0.079   12.7   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.051   13.5   0.0       0.11   12.3   0.0    1.6  2  RsgA_GTPase      RsgA GTPase
       0.09   12.1   0.2       0.14   11.5   0.0    1.6  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.094   12.8   0.0       0.39   10.8   0.0    1.9  2  AAA_14           AAA domain
        0.1   12.7   2.8        0.3   11.2   0.6    2.5  3  AAA_2            AAA domain (Cdc48 subfamily)
        0.1   12.3   0.0        0.2   11.4   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.6   2.3e-59   1.5e-56       1     157 [.      13     170 ..      13     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 2.3e-59
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 mGaGKst+G++lA++l++ef+D+D++ie+rtg+++ ++f+ ege+gFr++E+++++el+e++g+V+atGGG+v s+e+r+ l+++g+v+yL++++e++l
  EHT98973.1  13 MGAGKSTIGRQLAQQLNMEFFDSDQEIERRTGADVGWVFDVEGEAGFRDREEKIINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQL 111
                 9************************************************************************************************** PP

                 HHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI 100 erlkadkeRPllqekskeeelleela.ereplyeeaadvvvdeseeskeevaeeileal 157
                 +r+++dk+RPllq +s+ +e+le la er+plyee+adv+++++++s++ va++i+++l
  EHT98973.1 112 ARTQRDKKRPLLQVESPPREVLEALAaERNPLYEEIADVTIRTDDQSAKVVANQIIQML 170
                 ********************************************************987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   4.2e-09   2.7e-06       2      41 ..       7      46 ..       7      75 .. 0.81
   2 !    7.5   0.1    0.0069       4.4       9      87 ..      83     160 ..      76     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.2e-09
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtd 41
                ++lvG+ G+GKst  ++l+++l +++ +sd++++r +g d
  EHT98973.1  7 IFLVGPMGAGKSTIGRQLAQQLNMEFFDSDQEIERRTGAD 46
                689*******************************999854 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0069
      AAA_33   9 GsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerar 87 
                 Gs Ks   ++ l ++g+v+  + t+ ++l+ t++++k+ + +v++  ++ l++la++ +   +  i+d t ++ ++ a+
  EHT98973.1  83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVESPPREVLEALAAE-RNPLYEEIADVTIRTDDQSAK 160
                 788999999*9*999999999999999****************99999999888865.334455666666666666555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.3e-09     8e-07       1     108 [.       7     134 ..       7     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.3e-09
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss..................aleeg 74 
                 I+l G++G+GK+t+++ L++ l++       ++ r + ++ g++++v+ e          +d+ +k++++l e                      ++ g
  EHT98973.1   7 IFLVGPMGAGKSTIGRQLAQQLNMeffdsdQEIERRTGADVGWVFDVEGEaG-------FRDREEKIINELTEKQGivlatgggsvksretrnrLSARG 98 
                 99*******************9999999886666666666666666666631.......2222222333333322222233345555666888878888 PP

      AAA_18  75 knlvidghlaeleseaakdikk..vvLtaspeelle 108
                  +++++  +++ +   ++d+k+    ++ +p e le
  EHT98973.1  99 VVVYLETTIEKQLARTQRDKKRplLQVESPPREVLE 134
                 888999999999999999988877777777766665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   7.4e-08   4.7e-05       3      30 ..       9      36 ..       7      43 .. 0.91
   2 ?    0.4   0.2      0.69   4.4e+02     150     180 ..      93     123 ..      82     134 .. 0.72
   3 ?   -0.4   0.6       1.3   8.2e+02     181     208 ..     142     169 ..     101     172 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 7.4e-08
                    EE-STTSSHHHHHHHHHHHHT-EEEEHH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyldtg 30
                    + GP g+GKs+++r+la++l+++++d+ 
      EHT98973.1  9 LVGPMGAGKSTIGRQLAQQLNMEFFDSD 36
                    56***********************985 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.69
                     HHHHTT----HHHHHHHHHHHHHHHHCTSSS CS
  Cytidylate_kin 150 qlkakgtsvsleellaeikeRDklDkerevg 180
                      l+a+g  v le+ +++  +R ++Dk+r + 
      EHT98973.1  93 RLSARGVVVYLETTIEKQLARTQRDKKRPLL 123
                     3456778888888888889999999999765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.3
                     -S---TT-EEEETTTS-HHHHHHHHHHH CS
  Cytidylate_kin 181 pLklaedaliidtskltieevvekilel 208
                     pL      + i t++ +++ v ++i+++
      EHT98973.1 142 PLYEEIADVTIRTDDQSAKVVANQIIQM 169
                     4444444566777777777777777765 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05     0.015       2      28 ..       8      34 ..       7      43 .. 0.88
   2 !    7.5   0.1    0.0051       3.3     121     181 ..      95     158 ..      85     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
                EEEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK  2 vveGnIgaGKstlvklLskklgvkvfe 28
                 + G++gaGKst+  +L+++l++++f 
  EHT98973.1  8 FLVGPMGAGKSTIGRQLAQQLNMEFFD 34
                567*******************99985 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0051
                 CH-SEEEEEE--HHHHHHHHHHCTTCCCT...TS-HHHHHHHHHHHHHHHTSGGCS-EEEEETS CS
         dNK 121 akpdlliYLkasletclerikkRgreeek...kieldYlekLhekyeewlkklnevpvlvidve 181
                 +   +++YL++++e+ l r ++ ++         +++ le+L  + ++ ++++  v++ + d +
  EHT98973.1  95 SARGVVVYLETTIEKQLARTQRDKKRPLLqveSPPREVLEALAAERNPLYEEIADVTIRTDDQS 158
                 45779************99876433332224455678888888888888888777777666655 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.5e-06   0.00099       7      34 ..      12      37 ..       6     116 .. 0.81
   2 ?    4.0   0.1     0.076        49      81     108 ..      59      85 ..      39     165 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.5e-06
  Cytidylate_kin2  7 eyGsgGetigeaLAekLglpfydreiie 34
                      +G+g++tig++LA++L+++f+d +  +
       EHT98973.1 12 PMGAGKSTIGRQLAQQLNMEFFDSD--Q 37
                     68*********************84..3 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.076
  Cytidylate_kin2  81 lfeaqervirelaaeesvVivGRgadli 108
                      +++++e++i+el ++ +++++  g+  +
       EHT98973.1  59 FRDREEKIINELTEK-QGIVLATGGGSV 85 
                      667889999999976.566665555433 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.9e-06    0.0012       2      29 ..       8      35 ..       7      79 .. 0.86
   2 ?   -2.4   0.0       9.4     6e+03      77      93 ..     154     170 ..     141     172 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.9e-06
                EEESSTTSSHHHHHHHHHHHHTHEEEEE CS
         AAA  2 llyGppGtGKTllakavakelgveflei 29
                 l+Gp G GK+++ +++a++l++ef+  
  EHT98973.1  8 FLVGPMGAGKSTIGRQLAQQLNMEFFDS 35
                79*********************99865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.4
                 CCCHHHHHHHHHHHHHH CS
         AAA  77 seseeeervvnqLltel 93 
                 +++++++ v+nq++++l
  EHT98973.1 154 TDDQSAKVVANQIIQML 170
                 34556666666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   3.8e-06    0.0024      24      52 ..       4      48 ..       1     171 [. 0.72

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.8e-06
      AAA_16 24 pelvllsGesGvGKsslvrellralekd................g 52
                 ++++l+G+ G GKs++ r+l+++l+ +                g
  EHT98973.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEffdsdqeierrtgadvG 48
                489********************9988744444444444444433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.3e-06    0.0021       5      38 ..       4      40 ..       1     126 [. 0.70

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.3e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee...e 38
                ++ ++++G+ G+GK+t  r+l++ql+ e +  +   e
  EHT98973.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFFDSDqeiE 40
                7889********************9765544446662 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     7e-06    0.0045      20      46 ..       5      31 ..       1      36 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7e-06
                EEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakalgve 46
                + i+L G++GaGK+t+ r+la++l++e
  EHT98973.1  5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31
                5699*******************9876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   1.7e-05     0.011      10      37 ..       3      30 ..       1     169 [. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-05
                TTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkp 37
                e + + +vG+ GaGKSt+ + la++l+ 
  EHT98973.1  3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30
                567899*************999998875 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.2e-05     0.014       5      30 ..       7      32 ..       3     120 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-05
                EEEESSTTSSHHHHHHHHHHHHHHTT CS
  APS_kinase  5 vwltGlsgsGKstianalekkLvekg 30
                ++l G +g+GKsti ++l+++L+ + 
  EHT98973.1  7 IFLVGPMGAGKSTIGRQLAQQLNMEF 32
                99*****************9998653 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-05     0.015       1      28 [.       6      33 ..       6      35 .. 0.92
   2 ?   -2.6   0.0       8.1   5.2e+03      86     112 ..      68      95 ..      65     114 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-05
                EEEEE--SSSSHHHHHHHGGGGBS--EE CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnreve 28
                +++LvGp G gKs++ ++la+ ln e++
  EHT98973.1  6 NIFLVGPMGAGKSTIGRQLAQQLNMEFF 33
                689******************9998875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.1
                 HHHHHSSEEE..-SSSEEE---...... CS
       AAA_5  86 lslleerrllleeggelvkakndd.lle 112
                 + l e++ + l+ gg+ vk +++  +l+
  EHT98973.1  68 NELTEKQGIVLATGGGSVKSRETRnRLS 95 
                 5566666666666666666666554444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-05     0.015      31      61 ..       2      32 ..       1      44 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
       AAA_7 31 knkkpvllvGptGtGKtviikdllkkldkek 61
                ++k++++lvGp G GK++i ++l ++l+ e 
  EHT98973.1  2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32
                6789**********************99664 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.8e-05     0.018       2      36 ..       3      37 ..       2      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-05
  Ploopntkinase3  2 tarliylvGqPGaGkstlmaeltkgfdrskveqee 36
                    ++r i+lvG  GaGkst+  +l++ ++ + +++++
      EHT98973.1  3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFFDSDQ 37
                    5799********************99999888655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   4.6e-05     0.029      35     114 ..       6      88 ..       1     170 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.6e-05
      AAA_25  35 lallaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.esl 114
                  + l+G+ g+GK+t+  +la  +    ++++     ++++     ++ + E+ + ++r R +++  +l+++++  + ++ g+ +s+
  EHT98973.1   6 NIFLVGPMGAGKSTIGRQLAQQLN--MEFFDsdqeiERRTGADVGWVFDVEGEA-GFRDREEKIINELTEKQGIVLATGGGSvKSR 88 
                 5789****************9987..5789999977666677777888888888.*************999998888866653333 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   0.00017      0.11       1     125 [.      10     120 ..      10     127 .. 0.52
   2 ?    0.1   0.1       1.6     1e+03      34      68 ..     137     169 ..     130     173 .] 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00017
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEEEETTEEEESSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeea.kkkgvlvdghprikeqagfldglpkevle 98 
                 +G+ G+GK+t+ ++l+++++ +++  +d   +e++r+  a + + +   + e +  ++++ ++ i+e   k++ vl +g  ++ ++++ + +l      
  EHT98973.1  10 VGPMGAGKSTIGRQLAQQLNMEFFD-SD---QEIERRTGA-DVGWV--FDVEGEAGFRDREEKIINELTeKQGIVLATGGGSV-KSRETRNRLS----- 95 
                 799******************9998.44...344444432.11222..22222222232222222222213344444444444.2233233322..... PP

                 HH...SEEEEEE--HHHHHHHHHHHTTS CS
      AAA_17  99 elkp.daiilleadpeeilerrlkdrtr 125
                       ++++le+  e+ l+r ++d++r
  EHT98973.1  96 ---ArGVVVYLETTIEKQLARTQRDKKR 120
                 ...2235666777777666666666655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.6
                 HHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHH CS
      AAA_17  34 akrgglakardemrklpleekkelqkeaaekiaee 68 
                 a++++  +  +e++++ ++ +++  k +a++i ++
  EHT98973.1 137 AAERN--PLYEEIADVTIRTDDQSAKVVANQIIQM 169
                 44444..3578899999999999999999988876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.8e-05     0.018       2      47 ..       4      48 ..       3      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-05
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie 47
                k++i+++Gp g+GK+t+ ++l  + l + ++++ ++++ + + d+ 
  EHT98973.1  4 KRNIFLVGPMGAGKSTIGRQL-AQQLNMEFFDSDQEIERRTGADVG 48
                789******************.999999999999999998887775 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00021      0.14       2      27 ..       7      33 ..       6      49 .. 0.84
   2 ?    0.6   0.2       0.9   5.7e+02      25      25 ..     121     121 ..      76     170 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
      AAA_28  2 ivitGgestGKTtlleaLaar.gypvv 27
                i ++G+ ++GK+t+ ++La++ +++ +
  EHT98973.1  7 IFLVGPMGAGKSTIGRQLAQQlNMEFF 33
                899****************98777655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.9
      AAA_28  25 p 25 
                 p
  EHT98973.1 121 P 121
                 1 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.1e-05     0.033       1      33 [.       7      38 ..       7      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkds 33
                  i+l+Gp g GKSt+ ++La++l  ++ ++++++
    EHT98973.1  7 IFLVGPMGAGKSTIGRQLAQQLNMEF-FDSDQE 38
                  789*******************9777.333344 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.3e-05     0.047      87     114 ..       3      30 ..       1      35 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
    AAA_PrkA  87 rkqilyllGPvggGksslverlkkllea 114
                 +k+ ++l+GP+g+Gks++  +l + l++
  EHT98973.1   3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 
                 577789***************9998875 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.2e-05     0.033      40      96 ..      42      99 ..      22     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
                  HHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESS.SSSHHHHHHHHHCT- CS
  His_biosynth 40 eegadelhvvDldaakegreanldlveeiaeevfipvqvGGG.Irsledveelleaga 96
                  ++gad   v D+++ +  r+++ ++++e++e+  i +  GGG ++s e+ ++l  +g+
    EHT98973.1 42 RTGADVGWVFDVEGEAGFRDREEKIINELTEKQGIVLATGGGsVKSRETRNRLSARGV 99
                  67999999**********************************9999998888888886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.079      22      38 ..       4      20 ..       1      21 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
      AAA_29 22 kgatlltGpsGsGKSTl 38
                k +++l+Gp G+GKST+
  EHT98973.1  4 KRNIFLVGPMGAGKSTI 20
                34799***********8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00018      0.11      99     127 ..       4      32 ..       1      45 [. 0.82
   2 ?   -3.0   0.0       9.1   5.8e+03      28      52 ..      88     112 ..      83     126 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
                  TSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelkt 127
                  ++ ++lvG+ G+GKSt+  +l+++l+++ 
   EHT98973.1   4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 
                  567899****************9988765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.1
                  TT--HHHHHHHHHHHHHTT-EEEEE CS
  RsgA_GTPase  28 pelslnlldrfLvlaeekgiepviv 52 
                   e++++l  r +v++ e+ ie  ++
   EHT98973.1  88 RETRNRLSARGVVVYLETTIEKQLA 112
                  5555555555555555555555544 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00022      0.14      22      47 ..       4      29 ..       1     108 [. 0.86
   2 ?   -2.7   0.0       4.9   3.1e+03     121     146 ..     131     161 ..     128     168 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllp 47
                  + n++lvGp G+GK+ + ++l++ l 
    EHT98973.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29
                  679**************999987665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.9
  Mg_chelatase 121 kvlevL...RePl..edgevtisrakakvef 146
                   +vle+L   R+Pl  e   vti+  +++++ 
    EHT98973.1 131 EVLEALaaeRNPLyeEIADVTIRTDDQSAKV 161
                   5555555558888444456777666666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0006      0.39       3      35 ..       5      32 ..       3      54 .. 0.79
   2 ?   -0.8   0.0       2.3   1.4e+03      80     118 ..      64      99 ..      32     107 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0006
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesily 35
                + ++++G+  +GK+t+ +ql+++l      + +
  EHT98973.1  5 RNIFLVGPMGAGKSTIGRQLAQQLN-----MEF 32
                67899****************8877.....333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
      AAA_14  80 ekalkslvdegknldvivtGSnskllskeiatslagrva 118
                 ek++++l +++  + v++tG  s   s+e++++l+ r+ 
  EHT98973.1  64 EKIINELTEKQ--GIVLATGGGSVK-SRETRNRLSARGV 99 
                 55666666655..677777766644.4666777666665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   0.00047       0.3       3      75 ..       4     104 ..       2     121 .. 0.66
   2 ?   -0.4   0.0       1.8   1.1e+03      17      39 ..     105     126 ..      98     139 .. 0.83
   3 ?    0.8   0.1      0.72   4.6e+02      85     106 ..     152     173 .]     143     173 .] 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00047
                 ---EEEE--TTSSHHHHHHHHHHHTT-................-EEEEEGGG---.----THHHHHHHHHTTT-HHHHTTS................EE CS
       AAA_2   3 iisilllgptgvGktelakalaellfv............kkekkliradaselle.eeevehlvsrligappgyvgaeegG................iv 72 
                 + +i l+gp+g Gk+ + ++la+ l++            +  +   ++d    +  ++  e+++++l  +++g+v a  gG                +v
  EHT98973.1   4 KRNIFLVGPMGAGKSTIGRQLAQQLNMeffdsdqeierrTGADVGWVFDVEGEAGfRDREEKIINEL-TEKQGIVLATGGGsvksretrnrlsargvVV 101
                 67999*********************99987665555543333344444443333344445555544.4556677776666777777777777777777 PP

                 EEE CS
       AAA_2  73 llD 75 
                 +l+
  EHT98973.1 102 YLE 104
                 765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
                 HHHHHHHHHHTT-....-EEEEE CS
       AAA_2  17 telakalaellfvkkekklirad 39 
                 t ++k+la++++ +k+++l  ++
  EHT98973.1 105 TTIEKQLARTQR-DKKRPLLQVE 126
                 778999999999.9999998776 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.72
                 --------HHHHHHHHHHHH-- CS
       AAA_2  85 ssgadvSregVqrdLLqilegg 106
                   + d S + V + + q+le++
  EHT98973.1 152 IRTDDQSAKVVANQIIQMLEKS 173
                 468899999**********986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00031       0.2      46      70 ..       3      27 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00031
   IstB_IS21 46 kkenivllGpsGvGKshlaialgve 70
                +k ni l+Gp G+GKs +   l+++
  EHT98973.1  3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27
                789*************999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 1385.86
//
Query:       EHT98974.1  [L=131]
Description: hypothetical protein CKS_5849 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.4   0.0    1.8e-09   37.3   0.0    1.0  1  HofP      DNA utilization proteins HofP


Domain annotation for each model (and alignments):
>> HofP  DNA utilization proteins HofP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.9e-14   1.8e-09       4     109 ..       7     117 ..       4     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.9e-14
        HofP   4 wlllmlalllltgmrdPfkP.Pedrc..riaelslwryqGvvkkGerltgilkdsqkkwrrveegqvlen.GwtivrltadkltlktGkgcePsqlvw. 97 
                  lll ++   +  +rdPf+P P + c   ++ ls wr qG++ +  r++g l ++q k   v  +q ++   w+ +r t+ +l l    +c   ++ + 
  EHT98974.1   7 VLLLLSCGAGVAQARDPFRPlPGAAClaEVEPLSEWRLQGIIGRAPRFQGWLLTPQGKSVHVLSDQPFPLfPWQTLRFTSRSLQLFILGSCPAQRFTFh 105
                 678899999999********8889885557889*****************************9999998538*************99999999999987 PP

        HofP  98 lrqgeenealds 109
                 l+   ++++ ds
  EHT98974.1 106 LKGRLHDKDSDS 117
                 777778888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1161.64
//
Query:       EHT98975.1  [L=180]
Description: hypothetical protein CKS_0865 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-09   35.5   0.0    1.7e-08   34.4   0.0    1.5  1  PilN      Fimbrial assembly protein (PilN)
     0.0031   17.9   0.6     0.0047   17.3   0.6    1.3  1  DUF4094   Domain of unknown function (DUF4094)
  ------ inclusion threshold ------
      0.046   13.3   3.8       0.06   12.9   3.1    1.6  2  TMEM100   Transmembrane protein 100
       0.23   11.7   4.0       0.26   11.5   3.4    1.3  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> PilN  Fimbrial assembly protein (PilN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.9e-12   1.7e-08       2      76 ..     101     172 ..     100     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.9e-12
        PilN   2 lldeLsravPkgvwltsisqegnqltitGsAvsndeVaefmrnLegspffknidlksaeqkttkgkslveFtitl 76 
                 l+ +L   +P+g+wlt++   +  l+++G A+  +e+ +f ++L+   +f++i+  +++++     + ++F + +
  EHT98975.1 101 LWLALPALLPDGLWLTRLDKRETSLQLEGKAQHMQEIRAFRQRLSDVALFSQIKQGNVQRQPD---GEYRFVLHI 172
                 6678999***********************************************999999983...567777765 PP

>> DUF4094  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.6     1e-06    0.0047       3      81 ..      20     128 ..      18     135 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
     DUF4094   3 kwvllLcvasflagllftnRlwtvp.s..diirqs.k.......eelklvsedcds..kdaesrskdilgevskthkaiqtL................. 71 
                 ++  +L+v s l+ ll++++ w  + +   ++rq+          e+++v+++      d+ ++ ++ l++ s++ ++ q+L                 
  EHT98975.1  20 QSLRMLAVTSGLVVLLVAGQCWRNHkAlrRVQRQHvGlshalkaAEQQVVQQQRLLkqLDEAQQRRHWLHQQSRQFHVWQQLwlalpallpdglwltrl 118
                 56779*****************88876877777776256556555555544332213333333377999999999889888866777777777777777 PP

     DUF4094  72 dktissLeme 81 
                 dk+  sL+ e
  EHT98975.1 119 DKRETSLQLE 128
                 7776666666 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.49   2.2e+03      99     119 ..       1      20 [.       1      26 [. 0.59
   2 ?   12.9   3.1   1.3e-05      0.06      89     120 ..      23      54 ..      12      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.49
     TMEM100  99 llassavCWkvrrrrkkerrr 119
                 ++a+  + W+  r + ++rr+
  EHT98975.1   1 MVAVNLLPWRHWRWQ-RQRRQ 20 
                 566777778766655.34443 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.3e-05
     TMEM100  89 glvLLsaGlvllassavCWkvrrrrkkerrre 120
                  ++ +++Glv+l+++  CW+ ++  ++ +r++
  EHT98975.1  23 RMLAVTSGLVVLLVAGQCWRNHKALRRVQRQH 54 
                 556678****************9998887775 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.4   5.9e-05      0.26      33      98 ..      11      92 ..       3     113 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.9e-05
                ...............XXXXXXXXXXXXXX........................XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
        RskA 33 aaapaararr.....laaaaAaalllvlg..............qlavasaaldplrqsaaqaeavvavlaapdaagatatvvdsa 98
                  ++++++ r     la++  +++llv+g              q++ +s al +++q+  q+++++  l+++  +++  +++ ++
  EHT98975.1 11 HWRWQRQR-RqslrmLAVTSGLVVLLVAGqcwrnhkalrrvqrQHVGLSHALKAAEQQVVQQQRLLKQLDEA--QQRRHWLHQQS 92
                22222222.235676666666777777789*************99999**********99999999999999..44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1429.52
//
Query:       EHT98976.1  [L=268]
Description: PilM family type IV pilus biogenesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-10   39.8   0.0    8.4e-09   34.9   0.0    2.0  2  PilM_2    Type IV pilus assembly protein PilM;


Domain annotation for each model (and alignments):
>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.7e-13   8.4e-09       1     168 [.       9     170 ..       9     183 .. 0.90
   2 !    3.1   0.0    0.0023        41     318     339 ..     244     265 ..     232     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.7e-13
      PilM_2   1 GiDissssvklvelskkkgslrvealaieplekdavvdreikdieavsealkrvvkklktrvkevaiavpgsavitkkialda.dLteeeleaqvelea 98 
                 G+Di  ++  ++++ +++ ++++ +   + l++d++ ++ ++   a+  +l +  +kl  r ++  + +p+   +++  +l++  L+e  l   v++ a
  EHT98976.1   9 GLDIQNRQCCALAILRRRRGWQLCHWWQQRLPQDTLRNGVLQSSPALLSVLSQW-RKLLPRRYTLRVCLPAHLALQQPLSLPDpPLKEPALGRFVRASA 106
                 99*************************************************985.5566677788999*************9846************** PP

      PilM_2  99 dqliPfpldevslDFevlgpsaekpdkvevllaAarkekvedrvalleaaglkakvvDvesyAleralel 168
                 ++l+P    e  lD+ ++     +p+     ++Aar++ v++  + le+aglk  v     +Al+  +e+
  EHT98976.1 107 QRLFPVDASELALDY-RV-----DPTLERLSVTAARRDVVTQWRTPLEQAGLKCSVFELAMNALNIVIEQ 170
                 ***************.44.....555555669*****************************999987664 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0023
      PilM_2 318 rakklardapsylvAcGLAlrs 339
                 ++  l ++  ++++A+GLAlr+
  EHT98976.1 244 QQPPLPAHPGAFVLAAGLALRK 265
                 6778899999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2110.21
//
Query:       EHT98977.1  [L=850]
Description: penicillin-binding protein 1A (PBP1A) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-63  212.7   0.0    5.8e-63  211.6   0.0    1.6  1  Transgly        Transglycosylase
    9.5e-31  106.9   1.7    2.6e-30  105.4   1.7    1.8  1  PCB_OB          Penicillin-binding protein OB-like domain
    1.5e-25   90.0   0.0    9.2e-24   84.2   0.0    2.6  2  Transpeptidase  Penicillin binding protein transpeptidase dom


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.0   9.7e-67   5.8e-63       2     177 ..      55     229 ..      54     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 9.7e-67
    Transgly   2 gellaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklek 100
                 g+l+a++  e +r  ++l+++pp++++a++a+ED+rFyeh+Gvd+ gi+rA+   l sg+ sqG+STitqQl++n+fls er+l rK+kea+lA+++e+
  EHT98977.1  55 GDLIAQY-GEMRRIPLSLQQVPPDMVHAFIATEDSRFYEHHGVDPIGIFRAASVALVSGHASQGASTITQQLARNFFLSPERSLMRKVKEAFLAIRIEQ 152
                 6789999.59999************************************************************************************** PP

    Transgly 101 klsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                  l+KdeILe+YlN++ylg ++yG++aA+++yFgk++ +L+l+e+a++agl+kaPs++npl ++++a +rr+vvl+rm
  EHT98977.1 153 LLNKDEILELYLNKIYLGYRAYGVGAASQVYFGKPVGELSLSEMATIAGLPKAPSTFNPLYSHSRAVARRNVVLARM 229
                 ****************************************************************************9 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   1.7   4.4e-34   2.6e-30       1     112 []     316     425 ..     316     425 .. 1.00

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 4.4e-34
                 B---SEE-TT-SHCT..HHHHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB   1 yRGpeakldlealaeadeealeealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 yRGp + l++ ++ ++ + ++ +alk+lp +g+l+pAvV+ v+ ++a+v+++dg+++ ++++g++war + sd+ qg++pks+++vl+pG++++vr+++
  EHT98977.1 316 YRGPTSVLWKVGEPAWGQTQIVKALKNLPLYGPLHPAVVTHVQSDEATVMMKDGSNVSLTMAGVRWARAFKSDTVQGPTPKSIAQVLQPGQQIWVRQVG 414
                 9************************************************************************************************** PP

                 T.S-EEEE---SS CS
      PCB_OB 100 degewrLrQvPev 112
                 d  +w+L QvP+v
  EHT98977.1 415 D--TWWLGQVPDV 425
                 *..********98 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   1.5e-27   9.2e-24       3     202 ..     429     608 ..     427     641 .. 0.87
   2 ?    2.7   0.1      0.01        60     241     273 ..     711     732 ..     685     763 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.5e-27
                     EEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-...SSSSE CS
  Transpeptidase   3 avvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdn...kgseg 94 
                      v ld+++g+v a+++  +++        + + nra+q   + GS +K+++  aa+++g ++  + l+d ++   +  +  dw  +n   + +++
      EHT98977.1 429 LVSLDPNNGAVRALVGGFDFN--------QSMFNRATQALRQVGSNIKPFLYTAAMDRG-LTLASILNDVPISRWDAGAGADWRPKNsppTYDGP 514
                     6889*************8774........5677**************************.899999999999988888899999999999999** PP

                     EEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BSEE CS
  Transpeptidase  95 itlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiGltvtplqlaqayaaiangGklvkPhlvk 189
                     i lr+ l +S+n+++v+  +++g d++ +yl++fg+ ++  +          t++   ga        + tplq+++ y+++angG l +P++++
      EHT98977.1 515 IRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVH---------TESLALGA-------ASFTPLQVVRGYSVMANGGFLIDPYFIS 593
                     *************************************922222.........22232334.......79************************** PP

                     EEEECTT..EEEESS CS
  Transpeptidase 190 aivdpdg..vrkvkp 202
                     +i++++g  v ++kp
      EHT98977.1 594 KIENEQGqtVFEEKP 608
                     ****99976555555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.01
                     --EEEEEEEEECSSSTTSEEEEEEEEEEEEEES CS
  Transpeptidase 241 kvagKTGTAevagkkgngkkegakiswfvgyap 273
                     ++ gKTGT++  ++           swf gy p
      EHT98977.1 711 DIGGKTGTTNSSKD-----------SWFSGYGP 732
                     899*****999863...........38888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5677.15
//
Query:       EHT98978.1  [L=188]
Description: ADP-ribose diphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-14   52.4   0.0    1.1e-13   51.4   0.0    1.5  2  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.26   4.7e+03     104     129 ..      16      40 ..       5      42 .. 0.67
   2 !   51.4   0.0   5.9e-18   1.1e-13       3     109 ..      47     150 ..      45     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.26
                 EEEEEEEEHHHHHHHHTHCTHHHHHH CS
       NUDIX 104 vsevrwvpleellkeklaaesrkllp 129
                 v+  r++++e++ + ++ +++r++++
  EHT98978.1  16 VARSRLFTVEAV-DLAFSNGARRIYE 40 
                 444578888888.7777777777776 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 5.9e-18
                 EEEEEEE.EEETTSEEEEEEES....SSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGC CS
       NUDIX   3 rravgvv.llnekgevLlvrrs....kkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegel 96 
                 r av +v +++++  ++l++++    +++  g  +P+G ++pgEt+ +AA REl+EE+G+ a +l+llg+l+   +y  ++++    ++v ++  +++l
  EHT98978.1  47 REAVMIVpIIDDH--LILIEEYavglESYELG--FPKGLIDPGETVNQAADRELKEEAGFGAGQLTLLGKLTMAPSYFSSKMN----IVVAEGLYQEKL 137
                 6789999999999..*****995544444444..**************************99*******88777776666655....556667777777 PP

                 SSTSTTTEEEEEE CS
       NUDIX  97 epndenevsevrw 109
                 e ++++ +   rw
  EHT98978.1 138 EGDEPEPLVVHRW 150
                 7774433333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1413.85
//
Query:       EHT98979.1  [L=711]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1176.7   0.1          0 1176.5   0.1    1.0  1  IgaA      Intracellular growth attenuator protein IgaA
  ------ inclusion threshold ------
      0.095   12.6   1.6        5.9    6.8   0.1    3.0  3  DUF1275   Protein of unknown function (DUF1275)


Domain annotation for each model (and alignments):
>> IgaA  Intracellular growth attenuator protein IgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1176.5   0.1         0         0       1     701 [.       1     702 [.       1     704 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1176.5 bits;  conditional E-value: 0
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX--SS-EEEE--HHHHHHHHHHHHHHHH--------SS----------GGGGEEEEEEE-EEEE CS
        IgaA   1 mstiviilailliclivaglllllklrrrkklakllslakattrkltaeerkaiekyleelekakqttalseassaeekltltaksdnvyavtraitRy 99 
                 msti+iila++l+c+i+ag+ +++++rrr+ lak l+++++ +rklt++er+a+e+yl++lek+ +  ++ e+ +++ekl+lta+s+nvy+vtraitRy
  EHT98979.1   1 MSTIIIILALVLTCSILAGIGFWYAMRRRPPLAKPLPFISPPCRKLTERERRAVEQYLAALEKQPRILSPGESRRRHEKLVLTAQSNNVYPVTRAITRY 99 
                 9************************************************************************************************** PP

                 --S-SSSSS-EEEETTEEEB--TTSTTT--SSEEEEEEE-SSSEEEEEETTEETT-XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 100 glstdepnkWrYyldsvevhlPplleqyiaeenevelikteslPlvislnGhslkeeveeaa.aaalakassknasirkeeseqvellkiRketkeeya 197
                 glstd+p+kWrYyld+vevhlPpl+eqyi++en+veli+t+s+Pl+islnGhsl +++ +++  ++l++ +s+nasirk ese+vel+++Rket eey+
  EHT98979.1 100 GLSTDDPHKWRYYLDEVEVHLPPLWEQYITDENYVELIRTQSIPLIISLNGHSLVDYAIDQQsLPNLIRPASTNASIRKAESENVELVRVRKETLEEYR 198
                 *********************************************************99999789999******************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 198 lsrseglreallivlallllflallsPavllpWlvlaaalllavglwlllrplskkelreihClrGtpkrwGLfgesdqeqisnisLgiiDLiYPahWq 296
                 lsr++g+rea++i++al+++f+ ll P+ l++Wlv++a+++++++lwl++r + +++lreihClrG+pkrwGLfges+qeq sni+LgiiDLiYPahWq
  EHT98979.1 199 LSRPDGTREAVIISFALMMFFIGLLLPTSLMIWLVVIASAMVVASLWLMYRIPGENDLREIHCLRGAPKRWGLFGESNQEQ-SNITLGIIDLIYPAHWQ 296
                 *********************************************************************************.9**************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 297 PyiaqdlgkktdidiYlnrqvvrqGryLsLhdevknfPlqrwgknlvlavgsllvllllllyvplslplklslaWlkgaetvevtsveelekaklrvGD 395
                 Py+a+dlg++td++iYlnrqvvrqGr+LsL+devknfPlqrw+kn+vla+g+++vl++ll+++pls+p+klslaW+kg+++ +v sv++l++ +l+vGD
  EHT98979.1 297 PYVAHDLGQVTDVEIYLNRQVVRQGRFLSLQDEVKNFPLQRWRKNVVLACGAFIVLAFLLTWIPLSMPIKLSLAWVKGTDSLDVSSVNQLSREDLKVGD 395
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 396 tlkvkgtGmCyvppnlsskeksafapfDCsaiyWnnasplPlPeseiiekaaaLletvnkqLhpeee.eekvnpqLasaiqksGmiLlddfsdivlktq 493
                 +lkv+gtGmC+vp+n++s++++ ++pfDCs+iyWnna+plPlP+s+iieka+aLlet++kqLhpe++ + k+npqLasaiqksGmiLlddfsd+vlktq
  EHT98979.1 396 SLKVTGTGMCAVPGNYQSNRTYIYMPFDCSQIYWNNATPLPLPHSDIIEKASALLETTTKQLHPETNtDPKLNPQLASAIQKSGMILLDDFSDLVLKTQ 494
                 *******************************************************************9******************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 494 eLCekeedCvRLknaLvnLgnakdWetlvkraksGkLegvnvlLrpvsaeaLekLvntatssfivreieraaeaLnsPpPGGfliisDegkqlveqpap 592
                 +LC++ +dCvRLknaLvnLgnakdW+tlv+ra+sG+L+g+nvlLrpvsaeaLe+Lv+tats+f++re++ra+e+LnsPpPGGf+i+sDeg+qlv+qp+p
  EHT98979.1 495 ALCSQAQDCVRLKNALVNLGNAKDWDTLVSRADSGQLNGMNVLLRPVSAEALENLVHTATSTFFYRETRRATENLNSPPPGGFVIVSDEGHQLVNQPQP 593
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 593 avsledlealeqWkelqrlselllhtpfeaeGiitelsvDanGtrhiaLhsepdavtlwrylgttlLllvlllllilnavlllrrlrknrqRleeiqrY 691
                 av+l+dl+a++qW+elqrls+lllhtpf+a+Giit++ +DanGtrhiaLh+epda++ wrylg++lLl+vll++ ++n++l+lrr++ nrqR+ +iq+Y
  EHT98979.1 594 AVPLFDLDAASQWQELQRLSSLLLHTPFSATGIITNIYTDANGTRHIALHNEPDAMAKWRYLGAALLLIVLLACGLTNGLLALRRMHLNRQRMLAIQQY 692
                 *************************************************************************************************** PP

                 XXXXXXXXXX CS
        IgaA 692 Ydkcfnkell 701
                 Yd+cfn++l+
  EHT98979.1 693 YDTCFNPSLS 702
                 ******9986 PP

>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00066       5.9      75     116 ..     205     243 ..     188     261 .. 0.70
   2 ?   -0.6   0.0      0.12   1.1e+03      72      94 ..     336     357 ..     320     382 .. 0.62
   3 ?    3.1   0.0    0.0086        77     121     175 ..     618     678 ..     584     690 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00066
     DUF1275  75 rrlvllle.allllaaallvpagsvsplalallafamGlqnal 116
                 +r +++++ al+++ ++ll+p+    +l++ l+++a+++ +a+
  EHT98979.1 205 TREAVIISfALMMFFIGLLLPT----SLMIWLVVIASAMVVAS 243
                 3444555548899999999884....37888888888888876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.12
     DUF1275  72 grrrrlvllleallllaaallvp 94 
                 +r+r+ v+l++ +++++a ll +
  EHT98979.1 336 QRWRKNVVLACGAFIVLAFLL-T 357
                 466666666664443333322.2 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.0086
     DUF1275 121 sgaeitttvlTgnltdlgidlarllkkrk..larnrrla....iilafllGavvGallvks 175
                 + +  +t  +T+++td+      +l++++  +a +r+l+    +i+++++G   G l++++
  EHT98979.1 618 HTPFSATGIITNIYTDANGTRHIALHNEPdaMAKWRYLGaallLIVLLACGLTNGLLALRR 678
                 4555677777888888777655555777556445666665554677777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5051.46
//
Query:       EHT98980.1  [L=133]
Description: ribosome-associated heat shock protein Hsp15 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-14   50.9   0.1    1.8e-13   49.9   0.0    1.6  2  S4        S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0     1e-17   1.8e-13       1      46 [.       9      53 ..       9      55 .. 0.94
   2 ?   -3.3   0.0      0.43   7.7e+03      16      22 ..      78      84 ..      77      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1e-17
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTC CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgD 46
                +RLdk+l+++++ ++r+ Ar++Ie+G+V+ NG++ k ps  V+   
  EHT98980.1  9 VRLDKWLWAARFYKTRSIAREMIEGGKVHYNGQRSK-PSKLVERDA 53
                6***********************************.*****9765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.43
                HHHHHHH CS
          S4 16 rreArql 22
                 +eA+ql
  EHT98980.1 78 ASEAQQL 84
                589**97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1074.01
//
Query:       EHT98981.1  [L=288]
Description: heat shock protein Hsp33 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-86  288.2   0.0    6.4e-86  288.1   0.0    1.0  1  HSP33     Hsp33 protein


Domain annotation for each model (and alignments):
>> HSP33  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.1   0.0   3.6e-90   6.4e-86       1     267 []       5     269 ..       5     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 288.1 bits;  conditional E-value: 3.6e-90
                 .EEEEEEETTTTEEEEEEE-HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHCCS-.T-EEEEEEEESSTT-EEEEEEETTSEEEEEES.....-TT-- CS
       HSP33   1 DkllrflledgsvRgrlvrltelveealkrhdlppavtallgealaaaallastlkfegrltlqikgdgplgllvaeadsdgevRgyar.....npave 94 
                 D+l r+l+e++ vRg+lv+++++++e +k+hd+ppav++llge+l+a++ll++tlkf+g++t+q++gdgpl l+v++ ++++e+Rg+ar      ++++
  EHT98981.1   5 DQLRRYLFENAAVRGELVNVSNTWRETIKNHDYPPAVQTLLGELLVATSLLTATLKFDGEITVQLQGDGPLTLAVINGNNQQELRGVARmkgeiPDDST 103
                 899**************************************************************************************7666433334 PP

                 -..HH-SCEEEEE..EE.TC..EEEEEEE-SSSS.SHHHHHHHHHHCC-S-EEEEEEEEEETSCEEEEEEEEEEESTTTSCCHHHHHH.HHHCCS-.-H CS
       HSP33  95 lp.avgkGvlavt..kdqkegepyqGivelvsge.iaedlehYfaqSEQiptavalavlvdkrsvkaagGlllQlLPgadeeliedle.erlkalaatl 188
                 l  +vg+G+l++t  +  ++ge+yqG+v l +g+ ++e+le+Yf +SEQ+pt++ + ++        a+G+llQ+LP +d+   ++ + ++l++l++t+
  EHT98981.1 104 LKsMVGNGYLVITitP--EKGERYQGVVGL-EGDtLSECLEDYFMRSEQLPTRLFIRTSDA-G----AAGILLQVLPAQDT---DKEDfDHLATLTETI 191
                 44889********644..4567********.7777************************66.6....**********8884...4444689******** PP

                 HH.HC.CC-HHHHHHHHHHSTS--EEEEEEE-EE-----HHHHHHHHHTT-CHHHHHHHHCCTEEEEE-TTT--EEEEE CS
       HSP33 189 teeelleelpaeellerlfheedvevleekpvefkCrCsrervekaLkslgkeeleeileedgkievtCefCgkkYrfd 267
                 ++eel+ +lpa+++l rl+h+e+v+v++++pv +kC+Csrer+ ++Lk+l++ee++ei++edgki+++C++Cg++Y fd
  EHT98981.1 192 KTEELI-DLPATDVLWRLYHQEEVTVYDPQPVIYKCTCSRERCGEVLKTLPQEEVDEIIAEDGKIDMHCDYCGSHYVFD 269
                 *****8.9*********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2568.24
//
Query:       EHT98982.1  [L=539]
Description: phosphoenolpyruvate carboxykinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-210  699.6   0.0     2e-210  699.3   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase
    1.9e-05   24.8   0.1       0.34   11.1   0.0    2.8  2  AAA_33     AAA domain


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  699.3   0.0  2.2e-214    2e-210       2     464 ..      21     490 ..      20     491 .. 0.97

  Alignments for each domain:
  == domain 1  score: 699.3 bits;  conditional E-value: 2.2e-214
                 -EEES--HHHHHHHHHHT.....TS-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTT......BEEE-HHHHHHHHHHHHHHHHTS-EEE CS
   PEPCK_ATP   2 kvirnlsvaeLveealkr.....eegkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkv......nkpiseekfealkekvleylkekelyv 89 
                 +v++n+ +++L++e+++      e+g+lt++ga++v+tg +tgRspkdk+iV+d++t+d++wW+++      n+p+s+e+++alk+ v+++l++k+l++
  EHT98982.1  21 EVVHNPDYDTLFQEEMRPelegfERGTLTQSGAIAVDTGVFTGRSPKDKYIVRDDTTRDTLWWNDQgtgkndNQPLSQETWQALKKCVTQQLSGKRLFI 119
                 799************9998888777**************************************997788888*************************** PP

                 EEEEE-SSTTT-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT---SEEEEEETT----HHHH.--SSS-EEEEETTTTEEEEES---THHHHHHHHHHH CS
   PEPCK_ATP  90 vdafagadpkyrlkvrviterawqalfvknllirpteeeleefepdftilnapefkadpekd.glnsetvvalnlekklvlilgteYaGEikKsifsvm 187
                 vdaf+ga+p++rl+vr+ite+awqa+fvkn++i+p+++el++f+pdf+++n +++++ ++++ gl+se++va+nl+++++li+gt+Y+GE+kK++f++m
  EHT98982.1 120 VDAFCGANPDSRLSVRFITEVAWQAHFVKNMFIQPSAAELDNFTPDFVVMNGAKCTNPDWQAqGLHSENFVAFNLTERMQLIGGTWYGGEMKKGLFAIM 218
                 *********************************************************999988************************************ PP

                 HHHHHHTT-EEEEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-T CS
   PEPCK_ATP 188 nyllpkkgvlsmhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynairfgavlENvvlde 286
                 nyllp kg++smhcsanvg k+gdva+fFGLSGtGKTtLs+dp+r+ligdDehgw+d+gvfn+egGcYaKti+Ls+++epeiy+air++a+lENvv++ 
  EHT98982.1 219 NYLLPLKGIASMHCSANVG-KAGDVAVFFGLSGTGKTTLSTDPDRQLIGDDEHGWDDDGVFNFEGGCYAKTINLSEQAEPEIYRAIRRNALLENVVVR- 315
                 *******************.677**************************************************************************6. PP

                 TT--EETT--SS-S--EEEEEGGGSSSB-TT.SEE--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-S CS
   PEPCK_ATP 287 etrevdfddtslteNtrvaypiehienakee.svaghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlp 384
                 e++++df+d+s+teNtrv+ypi+hi+n++++ s+agh+k++ifLtadafgvlPpvs+Lt+eq++yhFlsG+tak+aGtergvt p++tFsacfga+Fl+
  EHT98982.1 316 EDGSIDFADDSKTENTRVSYPIHHIDNIVQPvSKAGHAKKVIFLTADAFGVLPPVSRLTPEQTQYHFLSGFTAKLAGTERGVTAPTPTFSACFGAAFLT 414
                 67999**********************77661566**************************************************************** PP

                 S-HHHHHHHHHHHHHHH--EEEEEE-SEESSSTTTSEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-G CS
   PEPCK_ATP 385 lhpteyaelLaeklekhnakvyLvNtGwtggaygvgkrislkatraiikaildgeleavefekdpvfglevptevpgvps 464
                 lhpt+yae+L +++e+++a++yLvNtGw+g+    gkrislk+traii+ail gel+++ +e+ pvf+l+vp+++ ++++
  EHT98982.1 415 LHPTQYAEVLVKRMEAAGAQAYLVNTGWNGS----GKRISLKNTRAIINAILAGELDDAPTETLPVFNLQVPKTLGDLDE 490
                 *****************************99....*********************999***************999886 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   3.8e-05      0.34      26      77 ..      70     122 ..      64     153 .. 0.86
   2 !   10.7   0.0   5.1e-05      0.45       1      17 [.     242     258 ..     242     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.8e-05
      AAA_33  26 vllssdtlrrrlfgtdqqsktdytr.vldrlyqilnelarkalsagrnvilda 77 
                 ++++ dt r++l  +dq + ++ ++ ++++++q l++ +++ ls +r +i+da
  EHT98982.1  70 YIVRDDTTRDTLWWNDQGTGKNDNQpLSQETWQALKKCVTQQLSGKRLFIVDA 122
                 57999******99988877666655599***********************98 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.1e-05
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 + ++ Gl+G+GK+tl++
  EHT98982.1 242 VAVFFGLSGTGKTTLST 258
                 6789***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4201.69
//
Query:       EHT98983.1  [L=454]
Description: sensory histidine kinase in two-component regulatory system with OmpR [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-21   76.0   0.0    5.6e-21   75.1   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    5.4e-10   39.2   0.1    1.3e-09   37.9   0.1    1.7  1  HisKA        His Kinase A (phospho-acceptor) domain
    3.4e-08   33.7   0.1    4.3e-07   30.2   0.0    2.8  3  HAMP         HAMP domain
     0.0026   17.6   0.0     0.0045   16.8   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0063   16.5   0.0      0.014   15.3   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.6e-24   5.6e-21       6     111 ..     337     439 ..     333     440 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.6e-24
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEE.EE.TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveika.se.ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 +++++ nlv Na+++    g++++++++ +e  + +++veD+G+Gi +++l +lf++f++ ++++r+++gtGlGl+iv+++++ ++G++++ +++ +G 
  EHT98983.1 337 IKRALANLVVNAARY----GNGWIKVSSgRElHRAWFQVEDDGPGIKPDQLAHLFQPFVR-GDSARSTSGTGLGLAIVQRIIDAHQGSLEIGDSERGGL 430
                 68899*********9....68899999643389***************************.99****************************99999*** PP

                 EEEEEEESS CS
   HATPase_c 103 tftftlple 111
                 +++ +lpl+
  EHT98983.1 431 RIRAWLPLA 439
                 ******986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   3.6e-13   1.3e-09       3      63 ..     235     289 ..     233     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.6e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsr 63 
                 + ++agv+H+LrtPL+ i++++e++       e+   + e+i + ++ +++++e++ d+ r
  EHT98983.1 235 TLLMAGVSHDLRTPLTRIRLATEMMN------EQDGYLAESINKDIEECNAIIEQFIDYLR 289
                 6799********************93......6788999*****************99866 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.2e-10   4.3e-07       1      50 [.     177     226 ..     177     229 .. 0.94
   2 ?   -1.3   0.0      0.81   2.9e+03       8      21 ..     247     260 ..     241     275 .. 0.80
   3 ?   -1.4   0.0      0.88   3.1e+03       5      37 ..     336     364 ..     335     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.2e-10
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldr 50 
                 l++r   rPL  L+ aa ++++G + ++l ++g  E++ + rafN+M+  
  EHT98983.1 177 LFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTRAFNQMAAG 226
                 578999*****************************************975 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHT CS
        HAMP   8 rPLrrLaraarria 21 
                  PL r++ a++ + 
  EHT98983.1 247 TPLTRIRLATEMMN 260
                 79999999998875 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.88
                 TTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHH CS
        HAMP   5 rilrPLrrLaraarriaaGdldtrlpvsgrDEi 37 
                 +i r L +L+  a+r ++G+++++    ++ E+
  EHT98983.1 336 SIKRALANLVVNAARYGNGWIKVS----SGREL 364
                 678889999999999999996655....77666 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0045       3      76 ..     337     405 ..     335     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
  HATPase_c_3   3 lekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiG 76 
                   + Ala lv N+       +k++  ++  + + +++eDdG G+++++l   +++     +    ++s++  G+G
   EHT98983.1 337 IKRALANLVVNAARYGNGWIKVSSGREL-HRAWFQVEDDGPGIKPDQLAHLFQPFVRGDS----ARSTSGTGLG 405
                  578*********8888888999999976.799******************9996554444....3444444444 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.9e-06     0.014      32     112 ..     337     416 ..     294     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.9e-06
  HATPase_c_2  32 irlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvDev 112
                  i+ a++ +++Na ++++     g ++v+  ++  +  ++v+D+Gpg +p +l++  +  p      + s    G+Gla+++++ D  
   EHT98983.1 337 IKRALANLVVNAARYGN-----GWIKVSSGRELHRAWFQVEDDGPGIKPDQLAHLFQ--PfvrgdsARSTSGTGLGLAIVQRIIDAH 416
                  55566666777777777.....688899889999999*********98888776554..2346667999999************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3271.74
//
Query:       EHT98984.1  [L=239]
Description: DNA-binding response regulator in two-component regulatory system with EnvZ [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-30  103.0   0.0    1.4e-29  102.5   0.0    1.3  1  Response_reg  Response regulator receiver domain
    9.1e-23   80.1   0.0    2.2e-22   78.9   0.0    1.7  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
      0.006   17.0   0.0      0.012   16.0   0.0    1.5  2  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   2.4e-33   1.4e-29       1     112 []       7     117 ..       7     117 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.4e-33
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdDd  +r+ll+++l+e+g+ +v+++++++++ +ll +e+++l++lD+++pg dGl +++++r +++ +p+i++ta++ee d++ +l++gadd+
    EHT98984.1   7 ILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY 102
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   + Kpf+p+eLl++++
    EHT98984.1 103 IPKPFNPRELLARIR 117
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   3.8e-26   2.2e-22       2      77 .]     157     232 ..     156     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 3.8e-26
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  e++ lt+ ef++L++L+++p++++sr++L++   g+++   +r++dv+isrLR+ +e+d+++pr+I+tv+g GY++
   EHT98984.1 157 EPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232
                  7899**********************************************************************87 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-06     0.012       1      82 [.       6      90 ..       6     118 .. 0.81
   2 ?   -3.1   0.0       1.7     1e+04      85     101 ..     170     186 ..     133     188 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseel.saaleesssealavilgsvs.sleealealaekdphlPvlllgesdea.e 82
                kiLv+ddd + r  le  L+  g +v+ v+++e  ++ l+++s++++++ l        + +++l ++++ +P+++++ ++e+ +
  EHT98984.1  6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQmDRLLTRESFHLMVLDLMLPGeDGLSICRRLRSQSNPMPIIMVTAKGEEvD 90
                7************************99887766637777777777777765544457799******************9998833 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
        FleQ  85 anvigelelPlnYnqLt 101
                 + ++++  +Pl+ ++L+
  EHT98984.1 170 KALVSHPREPLSRDKLM 186
                 33555556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1727.72
//
Query:       EHT98985.1  [L=82]
Description: hypothetical protein CKS_0877 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-29  100.6  21.3    4.7e-29  100.4  21.3    1.0  1  YjbE      Exopolysaccharide production protein YjbE
  ------ inclusion threshold ------
       0.97    9.1   8.3        1.1    8.9   8.3    1.2  1  TraT      Enterobacterial TraT complement resistance protein
        6.2    6.7  18.3       0.62    9.9   9.4    2.5  2  UL73_N    Cytomegalovirus glycoprotein N terminal


Domain annotation for each model (and alignments):
>> YjbE  Exopolysaccharide production protein YjbE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4  21.3   7.9e-33   4.7e-29       1      78 []       1      78 [.       1      78 [. 0.99

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 7.9e-33
        YjbE  1 mkkivvllailvlaastsvsAApeaGeAAGaqAsamsaGtseAvgigavaallGvalAasGGGdGantgtttttttgt 78
                mkk++ ll++l l + ++ +AAp+aGeAAGaqA+++++G+s+A+giga++allGvalA++GGG+G+ + ++t+ttt+t
  EHT98985.1  1 MKKTILLLSVLALSSISQSYAAPAAGEAAGAQATTTAQGNSNAIGIGAIGALLGVALATAGGGGGDGNSSSTSTTTST 78
                9***************************************************************************98 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.3   0.00018       1.1      84     128 ..      15      58 ..       9      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
        TraT  84 alkaGfggalagaaagaaigaanggsagaalggglvGglvgaiag 128
                  +++ + + +ag aaga+++    +++ +a+g g++G+l+g+++ 
  EHT98985.1  15 SISQSYAAPAAGEAAGAQATTT-AQGNSNAIGIGAIGALLGVALA 58 
                 568899999*********9999.6677888999999*****9875 PP

>> UL73_N  Cytomegalovirus glycoprotein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.5     0.037   2.2e+02       4      13 ..       6      15 ..       4      21 .. 0.71
   2 ?    9.9   9.4    0.0001      0.62      14      25 ..      67      78 ..      63      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.037
      UL73_N  4 LVLSVaagSS 13
                L LSV a SS
  EHT98985.1  6 LLLSVLALSS 15
                7788888776 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0001
      UL73_N 14 GNnSSTSTSatT 25
                GN+SSTST+ +T
  EHT98985.1 67 GNSSSTSTTTST 78
                9**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 620.75
//
Query:       EHT98986.1  [L=158]
Description: transcription elongation factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-25   88.4   0.8    3.4e-25   88.0   0.8    1.2  1  GreA_GreB_N  Transcription elongation factor, N-terminal
    2.6e-21   75.3   0.0    4.2e-21   74.6   0.0    1.3  1  GreA_GreB    Transcription elongation factor, GreA/GreB, C-te
  ------ inclusion threshold ------
      0.079   12.7   0.3       0.11   12.2   0.3    1.2  1  DUF1481      Protein of unknown function (DUF1481)


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.8   5.6e-29   3.4e-25       2      71 .]       5      74 ..       4      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 5.6e-29
                 EE-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEEE CS
  GreA_GreB_N  2 ylTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanaev 71
                 ++T+eg++ l++eL++l+++erpe+++++ +a++ GD+sENa+Y++ k++++ei++r+r+L++ L++ ++
   EHT98986.1  5 LITREGFNTLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLSKSLEQLRI 74
                 59***************************************************************99887 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0     7e-25   4.2e-21       2      77 .]      81     155 ..      80     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 7e-25
                 ..SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB---EEEEEEX. CS
   GreA_GreB   2 pkdvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsgkikveIlkiey 77 
                 ++++V+fG +V++e+ d+ge ++++iVg de+  +k++iS++SP+++aLl+k+vGd + v++p+g   + + +i+y
  EHT98986.1  81 QDGKVFFGVWVEVEN-DDGEVKRFRIVGYDEIFGRKDYISIDSPMARALLKKAVGDMAIVETPAGPAAWYVNEISY 155
                 679************.*********************************************************987 PP

>> DUF1481  Protein of unknown function (DUF1481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   1.8e-05      0.11      12      69 ..      20      74 ..      14      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
     DUF1481 12 rlWrkdraqqedvvlmsvyspykgketevteYrwqegkLreikregegkkpesvqlRf 69
                +lWr++r +  + v+    +   g+ +e  +Y++++ +Lrei+r++  + ++  qlR+
  EHT98986.1 20 YLWREERPEVTKKVTW---AASLGDRSENADYQYNKKRLREIDRRVRYLSKSLEQLRI 74
                6899988874333332...22335678999*****************98888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1274.93
//
Query:       EHT98987.1  [L=774]
Description: putative transcriptional accessory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-72  242.9   0.3    2.9e-72  242.2   0.3    1.4  1  Tex_N      Tex-like protein N-terminal domain
    3.5e-50  169.7   0.3    6.2e-50  168.9   0.3    1.4  1  Tex_YqgF   Tex protein YqgF-like domain
      8e-28   96.5   0.0    2.3e-27   95.0   0.0    1.9  1  HHH_3      Helix-hairpin-helix motif
    3.8e-23   81.6   0.8    7.1e-23   80.7   0.8    1.5  1  S1         S1 RNA binding domain
    6.3e-23   81.5   0.0    2.4e-22   79.6   0.0    2.1  1  HHH_9      HHH domain
    1.1e-10   41.8   0.0    3.1e-10   40.3   0.0    1.8  1  HHH_7      Helix-hairpin-helix motif
    9.4e-07   28.7   0.0    2.2e-06   27.5   0.0    1.7  1  YqgF       Holliday-junction resolvase-like of SPT6
  ------ inclusion threshold ------
       0.08   13.1   0.4        8.9    6.6   0.1    2.7  2  CRS1_YhbY  CRS1 / YhbY (CRM) domain
        0.1   12.9   0.1       0.83    9.9   0.0    2.6  2  HHH_6      Helix-hairpin-helix motif
       0.53   10.5   5.4       0.28   11.4   0.9    2.6  2  TPR_5      Tetratrico peptide repeat


Domain annotation for each model (and alignments):
>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.2   0.3   1.6e-75   2.9e-72       1     182 []       9     193 ..       9     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 242.2 bits;  conditional E-value: 1.6e-75
       Tex_N   1 iaeelslkekqveavveLldegatvPFIARYRkeatggldeeqlreieerleylrelekrkeevlksieeqgklteeLkkkieaaktleeledlylpYk 99 
                 ia+el+ +++qv+a+v+Lldeg+tvPFIARYRke+tggld++qlr++e+rl+ylrel++r++++lksieeqgklt++L+++i+a+ +++eledlylpYk
  EHT98987.1   9 IASELQARPEQVDAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLSYLRELAERRQAILKSIEEQGKLTDDLAQAINATLSKTELEDLYLPYK 107
                 799************************************************************************************************ PP

       Tex_N 100 pkrkTkatiArekGLeplAelileqksl.aeeeaakyvn..kevksaeealegardIiaeeisedaelrkklrellkkegvivskv 182
                 pkr+T+ +iA+e+GLeplAe++++++s+ +e+ aa yvn  ++v+++++al+gar I++e+++eda+l +k+r++l+k++++vskv
  EHT98987.1 108 PKRRTRGQIAIEAGLEPLAETLWQDPSHdPEQLAAGYVNadNGVADVRAALDGARYILMERFAEDAALLAKVRHYLWKNAHLVSKV 193
                 ************************9977789********999****************************************9986 PP

>> Tex_YqgF  Tex protein YqgF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.3   3.5e-53   6.2e-50       2     126 .]     327     450 ..     326     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 3.5e-53
                 -EEEEE--STT-EEEEEE-TTS-EEEEEEE--STTT--HHHHHHHHHHHHHHTT--EEEEESSTTHHHHHHHHHHHHHH.GGG--EEEEE--TTHHHHH CS
    Tex_YqgF   2 vvlglDPgyrtGcKlavvdetgkvletaviyphepkkkveeakkklkklvkkykveliaiGnGtasreteklvaelike.eelkvkyvivsEaGaSvYS 99 
                 +++glDPg+rtG+K+avvd+tgk+++t+++yph+ +   ++a++++++l+ k++vel+aiGnGtasrete++  +l k+  + ++++vivsEaGaSvYS
  EHT98987.1 327 ATMGLDPGLRTGVKVAVVDATGKLVATDTVYPHTGQ--AAKAAAAVAALCVKHQVELVAIGNGTASRETERFFLDLQKQfPQVTAQKVIVSEAGASVYS 423
                 68*******************************655..5799999********************************9977889*************** PP

                 HSHHHHHH-TTS-HHHHHHHHHHHHHH CS
    Tex_YqgF 100 aselaaeEfpdldvslrgavsiarrlq 126
                 aselaa+Efpdldvslrgavsiarrlq
  EHT98987.1 424 ASELAAQEFPDLDVSLRGAVSIARRLQ 450
                 **************************9 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   1.3e-30   2.3e-27       1      65 []     490     554 ..     490     554 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 1.3e-30
       HHH_3   1 vnavgvdiNtAsaeeLqklpGlgpklAknIvayReknGpfksreeLlkvkglgpktfeqlagflr 65 
                 vnavgvd+NtAs+++L++++Gl+ ++A+nIv +R++nG+f++r++Llkv++lgpk+feq+agflr
  EHT98987.1 490 VNAVGVDLNTASVPLLTRVAGLTRMMAQNIVGWRDENGRFQNRQQLLKVSRLGPKAFEQCAGFLR 554
                 79*************************************************************97 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.8     4e-26   7.1e-23       3      75 .]     648     719 ..     646     719 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 4e-26
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 + g v+eG Vt+vt++GafV++g +++g+v++s+ls++  v+dp++v+k Gd vkvkv +vd +r+ri+l+++
  EHT98987.1 648 MPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDK-FVDDPHQVVKAGDIVKVKVMEVDLQRKRIALTMR 719
                 6799**********************************.*******************************986 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.3e-25   2.4e-22       1      70 []     560     629 ..     560     629 .. 1.00

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.3e-25
       HHH_9   1 npLDnTavHPEsYalakkllkklgldlkeligeeallkkldkkklaeeevgeptleDIleeLakPgrDpR 70 
                 npLD++ vHPE Y++++++l+++++ l++l+g+ a+l++l++  ++++ +g+pt++DI++eL+kPgrDpR
  EHT98987.1 560 NPLDASTVHPEAYPVVERILAATEQALTDLMGNPASLRNLNAVDFTDARFGLPTVTDIMKELEKPGRDPR 629
                 9********************************************************************9 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.8e-13   3.1e-10       5     103 ..     463     555 ..     460     556 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.8e-13
                 TS---TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHHHC-S----TTHHHHTTSS-HHHHHHHCCCEE- CS
       HHH_7   5 slsfhPlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklkrlnerlearsqlitkqilskkvflncagflki 103
                 s+ +  +q+ +s+ +l k l++ + d vn vgvd+n a     +  ll  +aGl +  a++++   +  n+r+++r+ql+  + l++k f  cagfl i
  EHT98987.1 463 SIGVGQYQHDVSQSQLAKKLDAVVEDCVNAVGVDLNTA-----SVPLLTRVAGLTRMMAQNIVG-WRDENGRFQNRQQLLKVSRLGPKAFEQCAGFLRI 555
                 5667789*****************************99.....5689********999999886.68899***************************99 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   2.2e-06      99     147 ..     409     457 ..     338     460 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
                 --EEE---TTHHHHHTSHHHHHHSTT--HHHHHHHHHHHHHH-HHHHHH CS
        YqgF  99 vgvilvddevailYqnskkaeaefrdkPpllkyavalaRkiqdPLleya 147
                  + ++v +  a  Y  s+ a++ef+d+   l+ av++aR++qdPL e  
  EHT98987.1 409 AQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELV 457
                 33456888889**********************************9976 PP

>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.038        68       4      44 ..      57      99 ..      55     123 .. 0.83
   2 ?    6.6   0.1     0.005       8.9      27      61 ..     682     715 ..     675     723 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.038
   CRS1_YhbY  4 kelrrLrhlairlkpkv.kiGkaG.vtkevvdeiheklkteel 44
                  l++Lr+la r ++++  i ++G +t+ + ++i+  l + el
  EHT98987.1 57 TRLSYLRELAERRQAILkSIEEQGkLTDDLAQAINATLSKTEL 99
                5789************9548777659*************9998 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.005
   CRS1_YhbY  27 vtkevvdeiheklkteelvkvkcegppalnmkrma 61 
                 +++++vd+ h+  k+  +vkvk+ +++ + +kr+a
  EHT98987.1 682 LSDKFVDDPHQVVKAGDIVKVKVMEVDLQ-RKRIA 715
                 78999******************755555.99987 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.4   2.6e+03      51      74 ..      80     102 ..      58     104 .. 0.71
   2 ?    9.9   0.0   0.00047      0.83      29      72 ..     505     547 ..     465     551 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
       HHH_6  51 gpfksledlarrvds.lnkrqleaL 74 
                 g+    +dla+ +++ l+k++le L
  EHT98987.1  80 GK--LTDDLAQAINAtLSKTELEDL 102
                 33..346899999989999999988 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
       HHH_6  29 LaaikglgeaaaerivaeRekegpfksledlarrvdslnkrqle 72 
                 L+ + gl++  a++iv  R+++g f++ ++l++  + l  +++e
  EHT98987.1 505 LTRVAGLTRMMAQNIVGWRDENGRFQNRQQLLKVSR-LGPKAFE 547
                 899***************************998776.6666655 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   0.00016      0.28      21      81 ..      36      95 ..      28     105 .. 0.87
   2 ?   -0.6   0.2      0.83   1.5e+03      17      85 ..     303     376 ..     300     383 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
       TPR_5 21 vplYrraLaeGLagarrrratiqLassLRnlGeaeealaLLraeleapsdelddalaafla 81
                +  Yr+ +  GL++++ r++   L s LR l e  +a+    +e+ + +d+l +a++a+l+
  EHT98987.1 36 IARYRKEVTGGLDDTQLRQLETRL-SYLRELAERRQAILKSIEEQGKLTDDLAQAINATLS 95
                567********************9.68****999999888888888899*******99875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.83
       TPR_5  17 edkavplYrraLaeGLaga.rrrratiqLassLRn...lGeaeealaLLraeleaps.delddalaaflaLvLs 85 
                 ed+a++++ r L++ L  a    rat+ L   LR    +  ++ + +L+ + +  p+  +  +a aa++aL++ 
  EHT98987.1 303 EDEAINVFARNLHDLLMAApAGMRATMGLDPGLRTgvkVAVVDATGKLVATDTVYPHtGQAAKAAAAVAALCVK 376
                 68899999999988876551566899999999995333566666667776666554404556788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5627.94
//
Query:       EHT98988.1  [L=561]
Description: putative glucosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-18   66.9   0.0    9.7e-17   61.5   0.0    2.1  2  Alpha-amylase   Alpha amylase, catalytic domain
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.063   13.4   0.0    1.8  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   1.1e-20   9.7e-17      21     288 ..      83     337 ..      77     339 .. 0.83
   2 !    2.9   0.0    0.0073        65     294     324 ..     391     421 ..     389     430 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.1e-20
                    EEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGGCCC-E......ESS-STTC- CS
  Alpha-amylase  21 iwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkrdyyiwkegkeekeppnnwks 116
                    + l P++ ++ +d g+ + dy +++p  G+  d+  L +++     ++++D+V NH+s +++wfk++l+ +++   d++i  +++++ +  +  + 
     EHT98988.1  83 VHLLPFYPYS-SDDGFSVIDYHQVNPLCGDWHDIALLHQET-----RLMFDFVCNHMSAHSAWFKHYLA-QDPGWDDFFISLPPTTDLSAVTRPRT 171
                    6789999999.9**********************9987766.....7**********************.66688899998888766666666665 PP

                    TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC.....HCCHCCHHHHHHHHHHHTCCGTT CS
  Alpha-amylase 117 lfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal.....esngeflheftqalnetvasrke 207
                        + ++  +    +    f++++ dLn  +++v   + +v+  +l++g+d  RlD+v ++ k++++     e+    ++ f++  +e++     
     EHT98988.1 172 SPLLTPFTLANGDIRFVWTTFSADQIDLNFASPDVLLRMVEVLLDYLKRGADYVRLDAVGYMWKTPGTtcihlEKTHLLVKLFRAITDEVA---PG 264
                    55666777777777788899********************************************999998886666667777777777776...99 PP

                    -EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TT CS
  Alpha-amylase 208 vmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHD 288
                    ++++ E++  ++ d   y  +++ e++mv +f    +  +a      ++ sa++l ++ ++  +     +++ ++fl +HD
     EHT98988.1 265 TVIITETNVPHK-DNISYFGKGYDEAQMVYQFSLPPLVLHAI-----HTGSARALRQWASTLTTGNG--NTTFFNFLASHD 337
                    999***999777.5889999*******999888776655544.....56667777777766666555..588899999999 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0073
                    HHTTSSTTTTHHHHHHHHHCCCTSSSEEEEE CS
  Alpha-amylase 294 srlgddsaeaekklklaaillltlrGvpviY 324
                    +r gdd ++++k+  la ++ll ++Gvp+iY
     EHT98988.1 391 NREGDDDETRLKRFMLAHAILLAFPGVPAIY 421
                    67788887889******************** PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     7e-06     0.063      17      75 .]     503     559 ..     491     559 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7e-06
                     EEEETT...EEEEEEEESS-EEEEE--GGGTT-EEEETTTTEE-----SSEEEEE-TT-EEE CS
  Malt_amylase_C  17 lReyed...etilvvaNrsaqaveldlselagrvpvelfggeefpaigelytltLppygfyw 75 
                     ++++e    + +l+v+N s ++v+ +l+  + r + +++ ge++  i+    + L +++f+w
      EHT98988.1 503 MKRDEPvpgDALLCVFNLSGRQVKAQLP--EARLFQDVIRGEKVDGIQ---PVVLDAWQFMW 559
                     55555556699*****************..***************999...59999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4349.64
//
Query:       EHT98989.1  [L=89]
Description: uncharacterized DUF1471 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-20   70.6   0.3    2.5e-19   69.0   0.1    1.7  2  DUF1471      Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
      0.048   14.3   0.0      0.062   14.0   0.0    1.4  1  Ground-like  Ground-like domain


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15   1.4e+03       4      12 ..      13      20 ..      12      34 .. 0.57
   2 !   69.0   0.1   2.8e-23   2.5e-19       1      56 []      36      89 .]      36      89 .] 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.15
                EEEEEECSS CS
     DUF1471  4 igtisvsgv 12
                +g +s+s  
  EHT98989.1 13 MGAVSFS-A 20
                5666666.2 PP

  == domain 2  score: 69.0 bits;  conditional E-value: 2.8e-23
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                l++igt++++ + +sp+d++++lsk+AdekG+ky+ +++ re  +g+++atAe+YK
  EHT98989.1 36 LTKIGTVNTTAETTSPMDAKKKLSKAADEKGGKYFLVIAGRE--HGKFSATAEVYK 89
                79****************************************..***********9 PP

>> Ground-like  Ground-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.9e-06     0.062      17      55 ..      44      84 ..      11      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.9e-06
  Ground-like 17 m..kqssasdskkaiqkaleekfgssfevicsegdfsytif 55
                    +++s+ d kk+++ka+ ek g+ f vi  +++  ++++
   EHT98989.1 44 TtaETTSPMDAKKKLSKAADEKGGKYFLVIAGREHGKFSAT 84
                 145799**************************999888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 667.22
//
Query:       EHT98990.1  [L=258]
Description: carboxylesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-25   89.6   0.1    2.9e-25   89.4   0.1    1.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.6e-17   64.8   6.1    1.9e-17   64.6   6.1    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.3e-12   46.2   0.1    1.3e-11   44.3   0.1    1.7  1  Hydrolase_4    Serine aminopeptidase, S33
    3.1e-08   34.0   0.0    5.1e-08   33.3   0.0    1.3  1  Thioesterase   Thioesterase domain
      5e-06   26.5   0.0       0.64    9.8   0.0    3.1  3  Abhydrolase_2  Phospholipase/Carboxylesterase
    7.8e-05   22.5   0.0       0.39   10.5   0.0    2.2  2  Abhydrolase_5  Alpha/beta hydrolase family
     0.0044   16.7   0.0      0.031   14.0   0.0    2.2  2  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.15   11.6   0.0    1.3  1  Esterase       Putative esterase
       0.12   12.3   0.0       0.29   11.1   0.0    1.5  1  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.1   1.4e-28   2.9e-25       3     257 .]      16     242 ..      14     242 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.4e-28
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGE CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperV 98 
                    lv+lhG++ +++vw +  ++p L+  +f+++l+Dl+G+g+S+  pa         + ++ + ++l+++   + t++G+S+GG++a+++a+  per 
     EHT98990.1  16 LVLLHGWGLNAEVWQN--IVPRLST-HFRLHLVDLPGYGRSQGFPA---------MSQEAMAQVLEPHLPSRATVLGWSLGGLVATQLALSVPERL 99 
                    8***************..******9.***************77665.........3789999********************************** PP

                    EEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHH CS
  Abhydrolase_1  99 kalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwpt 194
                    +al+++++ +p++  +++++ +a+     f++    +++ +  ++la +   +e+          +  +++++     +++ ++++  + ++  ++
     EHT98990.1 100 RALITVAS-SPCFTARDDWPGIAPLTLHNFQQQLSQDFQRTVERFLALQTMGSESA---------RADARQLKDIVLSQPMLDVAVLNGGLQILSE 185
                    ********.***********************************************.........9****************************** PP

                    CCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 195 tdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                     d + +l  l        p l i+g+ D+lvp +   +l+q+lp +  vv ++a H  f+ +p
     EHT98990.1 186 CDLRDRLATLSL------PFLRIYGALDGLVPRRIAQQLDQQLPASPSVVTDKAAHAPFISHP 242
                    ***********9......****************************************99876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   6.1   9.6e-21   1.9e-17       1     218 [.      16     246 ..      16     248 .. 0.60

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 9.6e-21
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH..CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......E CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled..ladlaalldelaagggpvvlvGHSlGGalalaaapla.....lvv 89 
                    ++llHG g++a++W+  +++++l+ +++ + +DlpG+Grs     ++++   ++ a++l+     + ++ ++G+SlGG++a++   la     +++
     EHT98990.1  16 LVLLHGWGLNAEVWQ--NIVPRLSTHFRLHLVDLPGYGRS----QGFPAmsQEAMAQVLEPHL--PSRATVLGWSLGGLVATQ---LAlsvpeRLR 100
                    79************9..999999***************88....6665531345588888887..9999**************...6666678555 PP

                    E.EEES-.....----TTT.S----TTHH...HHHHTT-C..CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC.........HTTCCHH CS
  Abhydrolase_6  90 g.vlldppp...talpagl.laaalelll...allallrl..lawlsreplprlfladedadaawrarlarlaallaglg.........llpaaaw 166
                    + + +++ p      ++++ + a+l+l+    +l + + +   ++l+     +++ ++ +  +a ++ l +   ++++l+          l+  ++
     EHT98990.1 101 AlITVASSPcftA--RDDWpGIAPLTLHNfqqQLSQDFQRtvERFLA----LQTMGSESA--RADARQLKDIVLSQPMLDvavlngglqILSECDL 188
                    5788888666431..22222222222222111222222222234442....235555444..3333333333333332222211112211123344 PP

                    TT-TTGC....EEE.CTT-CHHHHCHHCCCH..STTEEET....CE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 167 adlpvpl....lvl.ggeDplvprllerlla..qagarlp....vvlpgaGHlphleepdeva 218
                    +d++++l    l + g+ D lvpr +++ l   +     p    vv   a H+p++++pd++ 
     EHT98990.1 189 RDRLATLslpfLRIyGALDGLVPRRIAQQLDqqL-----PaspsVVTDKAAHAPFISHPDAFC 246
                    4444444433355557****99977777777433.....333359999************997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   6.4e-15   1.3e-11       7     220 ..      16     225 ..      11     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.4e-15
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagl 104
                  +vl+HG +  ++  ++++ +L  + f  + +D  G+Grs+g  +       + +   +++ +v e+h  ++ ++lG S+GGl+a++++l  p+++++l
   EHT98990.1  16 LVLLHGWGLNAEVWQNIVPRLSTH-FRLHLVDLPGYGRSQGFPA-------MSQ---EAMAQVLEPHLPSRATVLGWSLGGLVATQLALSVPERLRAL 102
                  79*******************987.**************77666.......333...34566778999999*************************98 PP

  Hydrolase_4 105 i..lsaPalkikakl.....k.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplv.hgkitvrlllelldamkrleeraakit.. 191
                  i   s+P +  + ++       ++ +++ l++ +++++ ++      + ++ s+  +  a+  +d  + + ++ v +l++ l++++++  r+  +t  
   EHT98990.1 103 ItvASSPCFTARDDWpgiapLtLHNFQQQLSQDFQRTVERFLA----LQTMGSESARADARQLKDIVLsQPMLDVAVLNGGLQILSECDLRDRLATls 196
                  72257899**999994433312333344444445555555544....344444444444444455555588899999999999999876555555444 PP

  Hydrolase_4 192 lPllllhGeaDkvvdpeasrelyerlgsk 220
                  lP+l ++G+ D +v+++ +++l ++l+++
   EHT98990.1 197 LPFLRIYGALDGLVPRRIAQQLDQQLPAS 225
                  *****************999999988863 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.6e-11   5.1e-08       3     229 ..      16     251 ..      14     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2.6e-11
                   EEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHH.HHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEE CS
  Thioesterase   3 LflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaae.yaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslf 98 
                   L+l+++ g +a+v +++  +ls+   +++ v lpg++      +++ ++ +e +a+ l+++ p    ++ G+SlGgl+A ++A    ++   +++l+
    EHT98990.1  16 LVLLHGWGLNAEVWQNIVPRLSTH-FRLHLVDLPGYG----RSQGFPAMSQEaMAQVLEPHLPS-RATVLGWSLGGLVATQLALSVPER---LRALI 103
                   899999999**************7.***********8....33444444433155677788888.78899**********999988766...78899 PP

                   EESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHH....HCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSE.......HHCEEEEEEGSS-CT CS
  Thioesterase  99 lidssapseteaqeasrraedeefveeltdlggt....epeelledeellsellpalradyraleqyslrpeaaq.......klratlfngsddklk 184
                    ++ss+ ++   ++   ++      +++++++       +e++l+ +   ++  + +rad+r l+++   ++ +         l++  +++ +d+l+
    EHT98990.1 104 TVASSPCFTARDDWPGIAPLTL---HNFQQQLSQdfqrTVERFLALQ---TMGSESARADARQLKDIV-LSQPMLdvavlngGLQILSECDLRDRLA 193
                   9999999886666666666555...5555555443222377788877...8888999*********95.4444444557777777888888888888 PP

                   CCCCCCCHCH..............CHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHHH CS
  Thioesterase 185 dldtlelaer..............weqktsgevsvhvlegdhfylledrleavleiiek 229
                   +l+ ++l                 ++q+ +   sv  +++ h+  ++ +++a++++i +
    EHT98990.1 194 TLSLPFLRIYgaldglvprriaqqLDQQLPASPSVVTDKAAHAPFIS-HPDAFCQHIIS 251
                   888666665589999999999999**********************5.******99976 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.026        53      17      46 ..      16      45 ..      10      61 .. 0.81
   2 !    9.7   0.0   0.00035      0.69     102     136 ..      71     105 ..      52     122 .. 0.77
   3 !    9.8   0.0   0.00032      0.64     130     214 ..     170     254 ..     162     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.026
                   EEEE--TT--SHHHHHHHH.TT--TTEEEE CS
  Abhydrolase_2 17 viflHGlGdsghawaeaakteaalpnikfi 46
                   +++lHG G +++ w ++    + +++ +++
     EHT98990.1 16 LVLLHGWGLNAEVWQNIVPRLSTHFRLHLV 45
                   89************9988766666666665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00035
                    --GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEE CS
  Abhydrolase_2 102 ipssriiigGFSqGaalalylaltlpkklggivaf 136
                       sr  + G S G+ +a++lal+ p++l+  + +
     EHT98990.1  71 HLPSRATVLGWSLGGLVATQLALSVPERLRALITV 105
                    456677788******************99986654 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00032
                    -SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS--HHHHHHHHHHHH CS
  Abhydrolase_2 130 lggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsideeemqdikeflk 214
                    +  +  ++g l + ++      + t  lp l+i+g  D +vp ++++++ + l ++   v+ k  +    s +  + q i +f++
     EHT98990.1 170 MLDVAVLNGGLQILSECDLRDRLATLSLPFLRIYGALDGLVPRRIAQQLDQQLPASPSVVTDKAAHAPFISHPDAFCQHIISFIS 254
                    555666777777777777777777889***************************9999888888887777888888888888886 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00026      0.51      41      92 ..      59     110 ..      39     127 .. 0.83
   2 !   10.5   0.0    0.0002      0.39      92     143 ..     188     238 ..     161     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
  Abhydrolase_5  41 lgknkaeeiikeapklekfvvgGhslGGvvasrfaaee.ekiegvvflasYPe 92 
                    +++++ +++++ +    +  v G slGG va+++a +  e++ +++ +as P 
     EHT98990.1  59 MSQEAMAQVLEPHLP-SRATVLGWSLGGLVATQLALSVpERLRALITVASSPC 110
                    566777777776553.457899*************98758**********994 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0002
  Abhydrolase_5  92 ekdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnhagf 143
                     +d l +ls + l i+g  Dg+++ + +++  ++lp    vv+ +   ha f
     EHT98990.1 188 LRDRLATLSLPFLRIYGALDGLVPRRIAQQLDQQLPASPSVVTDK-AAHAPF 238
                    38999*******************************998887644.456665 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   2.5e+03       7      31 ..      16      40 ..      13      47 .. 0.78
   2 !   14.0   0.0   1.5e-05     0.031     105     200 ..      77     235 ..      55     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
        FSH1  7 iLcLhGytqsgeiFraktsalrkll 31
                +  LhG++ ++e++++ + +l  ++
  EHT98990.1 16 LVLLHGWGLNAEVWQNIVPRLSTHF 40
                5679******999998777777665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.5e-05
        FSH1 105 GiiGFSqGaalaallaslleellkea................................................................shpslkfai 139
                  ++G+S G+++a+ la  + e l+                                                                  s+p l +a+
  EHT98990.1  77 TVLGWSLGGLVATQLALSVPERLRALitvasspcftarddwpgiapltlhnfqqqlsqdfqrtverflalqtmgsesaradarqlkdivlSQPMLDVAV 175
                 56777777777766666666555544666677777777777777777777777777777777777777777777777888888888889999999**** PP

        FSH1 140 lvsGfkleepk.yeeyyeedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggH 200
                 l  G ++ ++   ++      +++p+L ++G lD +v++  +++L ++   s+ v++ + +H
  EHT98990.1 176 LNGGLQILSECdLRDR--LATLSLPFLRIYGALDGLVPRRIAQQLDQQLPASPSVVTDKAAH 235
                 ****999777545554..4788****************999999999998888888777777 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.7e-05      0.15     100     142 ..      62     101 ..      46     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.7e-05
                 THHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCE CS
    Esterase 100 qeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgs 142
                 + ++++l+ +++++++   v+G S+GGl+A  lal  p+r   
  EHT98990.1  62 EAMAQVLEPHLPSRAT---VLGWSLGGLVATQLALSVPERLRA 101
                 5667777777777777...*******************99754 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.29      42      79 ..      57      94 ..      50     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
     UPF0227 42 pqqalkeleklvaelgddnillvGssLGGyyatrlger 79
                p+   + + ++++ + + + ++ G sLGG++at l+  
  EHT98990.1 57 PAMSQEAMAQVLEPHLPSRATVLGWSLGGLVATQLALS 94
                5555566778888899999***************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2137.00
//
Query:       EHT98991.1  [L=226]
Description: competence protein F [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-10   40.5   0.0    3.1e-10   39.8   0.0    1.2  1  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.023   14.1   0.0    1.5  2  UPRTase         Uracil phosphoribosyltransferase
      0.017   14.6   0.0      0.027   14.0   0.0    1.3  1  PRTase_2        Phosphoribosyl transferase
      0.039   13.2   0.0      0.051   12.8   0.0    1.1  1  PRTase_3        PRTase ComF-like
       0.15   12.1   0.0        0.2   11.7   0.0    1.1  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
        1.2    9.4   5.9      0.087   13.1   0.7    1.8  2  DUF1612         Protein of unknown function (DUF1612)
          4    7.5   8.3        8.8    6.5   7.3    2.0  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.2e-13   3.1e-10      44     124 ..     138     223 ..     134     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.2e-13
                   HHHHHHHSTT-EE-EEEEEE-TTT--EE.................EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEE CS
  Pribosyltran  44 akiladeLevplayvrkvkyrpdgseeaargssdes.........rlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlv 124
                   a  la+ L++ +   + +++ + ++   +      +         +l++d+ g+++ ++DD+++tG+T++++ +lL+++g+++v+i +l+
    EHT98991.1 138 AAPLAHWLGCAFSPALYRRRAGAVQHHLSAR----QrrrnlrgafHLEADVTGRHIALIDDVVTTGSTVKEISRLLRAQGAASVHIWCLC 223
                   6666666666666555555555544444443....23445899999******************************************98 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2     3e+03       6      24 ..      97     115 ..      92     120 .. 0.78
   2 ?   14.1   0.0   9.1e-06     0.023     111     157 ..     176     222 ..     146     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
     UPRTase   6 llkakltilRdastsrkdf 24 
                 ll ++l   R+++tsr+d+
  EHT98991.1  97 LLLSWLNAYRSKRTSRPDL 115
                 6677888899999999987 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.1e-06
     UPRTase 111 yynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvl 157
                    +L ++++ r++ l+D v+ TG+++ ++ +lL+ +g+ + +I +l
  EHT98991.1 176 GAFHLEADVTGRHIALIDDVVTTGSTVKEISRLLRAQGAASVHIWCL 222
                 445789999****************************9998888776 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.027     120     149 ..     185     214 ..     158     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
    PRTase_2 120 aakelvLvDDEistGktalnliralqeklp 149
                 + +++ L+DD ++tG+t+ ++ r l+++  
  EHT98991.1 185 TGRHIALIDDVVTTGSTVKEISRLLRAQGA 214
                 3489*****************999988754 PP

>> PRTase_3  PRTase ComF-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     2e-05     0.051     114     165 ..     165     214 ..     150     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
    PRTase_3 114 lsaedreklilndkyhidkerlkgktlifldDiritgshedkirkslkeekl 165
                 lsa +r++  l   +h++++ ++g+++   dD+ +tgs+ ++i+++l+++++
  EHT98991.1 165 LSARQRRRN-LRGAFHLEAD-VTGRHIALIDDVVTTGSTVKEISRLLRAQGA 214
                 566666555.7999***987.69************************99887 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.8e-05       0.2      72     116 ..     175     219 ..     146     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
                     -----EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEE CS
  Pribosyl_synth  72 kppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyv 116
                     +  + +  dv+Gr   ++dd++   +++ + +++l+++Ga  +++
      EHT98991.1 175 RGAFHLEADVTGRHIALIDDVVTTGSTVKEISRLLRAQGAASVHI 219
                     55677889*****999************************98765 PP

>> DUF1612  Protein of unknown function (DUF1612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4       2.2   5.7e+03      29      40 ..      60      71 ..      54     112 .. 0.65
   2 ?   13.1   0.7   3.4e-05     0.087      48     120 ..     142     213 ..     128     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.2
     DUF1612 29 vlaaavlldaWe 40
                  ++ v + aW+
  EHT98991.1 60 SWQTLVCVSAWQ 71
                555555555554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.4e-05
     DUF1612  48 qpwlgrlLaaalLrqrg.ktasHLaalnlglkavrrerrrardretRllailealeaaaeaglkeldRlslAre 120
                 ++wlg  +  al r+r+  +++HL a +   ++ r     + d + R +a+++ + ++ + ++ke+ Rl  A+ 
  EHT98991.1 142 AHWLGCAFSPALYRRRAgAVQHHLSA-RQRRRNLRGAFHLEADVTGRHIALIDDVVTTGS-TVKEISRLLRAQG 213
                 79******999988776277777766.5678999999999*************9987765.79******99985 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.3    0.0034       8.8      15      48 ..       8      54 ..       3      55 .. 0.57
   2 ?    6.1   2.3    0.0045        12       1      23 [.      37      59 ..      37      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0034
         DZR 15 CseCgtklkavaa.............edrCpsCgekvdpearfCpeC 48
                C  C+ +l+ + +             +  Cp Cg ++ ++   C+ C
  EHT98991.1  8 CWLCQLPLRLARHgiccvclrqlprlPPLCPVCGLPAASGNLACGRC 54
                55555555432223333333333334778888888888888888877 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0045
         DZR  1 CpqCgeelppdarfCseCgtklk 23
                Cp Cg +  +++  C++C  +++
  EHT98991.1 37 CPVCGLPAASGNLACGRCLRHPP 59
                99999999999999999987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1710.31
//
Query:       EHT98992.1  [L=191]
Description: NfuA family Fe/S biogenesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-19   68.7   0.0    6.6e-19   67.8   0.0    1.5  1  NifU         NifU-like domain
      1e-13   51.4   0.1    2.4e-13   50.3   0.0    1.6  2  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> NifU  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   7.3e-23   6.6e-19       1      66 [.     111     177 ..     111     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 7.3e-23
                 HHHHHHH.HGGG--GG--EEEEEEEETT.EEEEEEESGGGG-....THHHHHHHHHHHHH-TT--EE CS
        NifU   1 ieevleeeirPaLasdGGdielvdvdeg.vVkvrlqGaCsgCpsstvtlkegiekaLkeevpevkeV 66 
                 +e +l+ +i+P+La++GG ++l++++++    +++ G+C+gC++ +vtlk+giek L +++p+ k V
  EHT98992.1 111 VEYLLQAQINPQLAGHGGRVSLMEITDDgFAILQFGGGCNGCSMIDVTLKDGIEKELLAAFPQLKGV 177
                 7899*********************8888999*******************************9988 PP

>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   2.6e-17   2.4e-13       3     105 ..       2      98 ..       1     101 [. 0.92
   2 ?   -2.5   0.0      0.64   5.7e+03      28      41 ..     135     150 ..     116     161 .. 0.52

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.6e-17
                  EEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  i +t++A+e+++kll++++    +r++v + g+p  +  C  g +y+     e+    d++l+ ++++ yv++ s+++l e+ ++dfv+d+++++L+ 
   EHT98992.1   2 IRITDSAQEHFSKLLSKQEDGtqIRVFVINPGTPTAE--C--GVSYCPPDAVEA---TDTELKFEKLSAYVDELSAPYL-EDAEIDFVTDNQGSQLTL 91 
                  99**************9877779*********99999..9..688888776655...9*********************.89**************** PP

                  ETCCEEE CS
  Fe-S_biosyn  99 dngildd 105
                  ++++++ 
   EHT98992.1  92 KAPNAKM 98 
                  ****996 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.64
                  EECCTSCCGG.S..TT CS
  Fe-S_biosyn  28 vddgggpysk.gg.Cs 41 
                  + d+g    + gg C+
   EHT98992.1 135 ITDDGFAILQfGGgCN 150
                  3333335555655576 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1492.83
//
Query:       EHT98993.1  [L=797]
Description: maltodextrin phosphorylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-295  982.2   0.0   1.6e-295  982.0   0.0    1.0  1  Phosphorylase  Carbohydrate phosphorylase


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  982.0   0.0    9e-300  1.6e-295       2     710 ..      93     794 ..      92     795 .. 0.99

  Alignments for each domain:
  == domain 1  score: 982.0 bits;  conditional E-value: 9e-300
                    HCTT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEEC CS
  Phosphorylase   2 kelgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkvee 97 
                    +e +++l+el+e+e d++LGnGGLGRLAac++d++at + pa+G g++Y+yGlF+Q++ +g+qveepd+W ++  pw  ++    v+v +ggkv +
     EHT98993.1  93 AEHQVELSELLEEEVDPALGNGGLGRLAACYMDAMATAGQPATGHGLNYQYGLFRQRFAEGKQVEEPDDWERDTYPWFRHNAALDVRVGLGGKVIK 188
                    68899*****************************************************************************************98 PP

                    CTTE...ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-STTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHHHHH CS
  Phosphorylase  98 eeeeeklkvkwvdeeevlavpydvpvvGyktktvntLrLwsakaseefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqYflv 193
                    ++e    + +wv++  +++ ++d+p++Gy++ ++  LrLw+a++++ fdl+ fn+g+  +a ++  +a +++kvLYPnd++ +gk+LrL+QqYf +
     EHT98993.1 189 RDE---GRLEWVPALYLRGEAWDLPITGYRNGVTLPLRLWKATSEHPFDLTLFNDGKPLQAEQQGIDAASLTKVLYPNDNHPQGKRLRLMQQYFQC 281
                    665...5899************************************************************************************** PP

                    HHHHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHH CS
  Phosphorylase 194 saslqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhleiie 289
                    ++++ dilrr+++  ++++ lp++ +iqlnDtHP++aipe++r+L+d ++l+wdeaw+it+++faytnht++peale+w+ +l++++lprh+ ii+
     EHT98993.1 282 ACAVADILRRHHQAGRSIHALPDHEVIQLNDTHPTIAIPEMLRVLLDAHQLSWDEAWHITSRVFAYTNHTLMPEALERWDEKLMRSVLPRHMVIIK 377
                    *************99********************************************************************************* PP

                    HHHHHHHHHHHHHSTT-HHHHHHHSSEETSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-CHHHCCCTSHHHHHH CS
  Phosphorylase 290 einerfleevekklpedeeklerlsiieeekkvrmanlaivgshsvngvaalhsellkkevlkdfyelypekfnnktnGitprrwlllanpelael 385
                    ein+r++++v++++p+d++ +++l++++ + +vrmanl++v +++vngvaalhs l+ ++++ ++++l+p+kf+n+tnGitprrw++++np+l++l
     EHT98993.1 378 EINRRLKQQVKQRWPGDKAIWKKLAVVA-DGQVRMANLCVVSGFAVNGVAALHSGLVVTDLFLEYHQLWPQKFHNVTNGITPRRWIKQCNPALSSL 472
                    ****************************.9****************************************************************** PP

                    HHHHCSSGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTT.S- CS
  Phosphorylase 386 itekigeewvkdleeLkkLekladdkefleelaeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneikenpe.kk 480
                    i+++++ ewv++l+ L+ Le++add++f+e+++++k++nK+rla++i++++g+ v+pe++fdvq+kRlheYkRq+L +Lhi++ Y+++++np+ ++
     EHT98993.1 473 IDDTLQCEWVSNLTALQGLEPCADDPAFRERFRAVKRHNKARLATYIAQRTGILVNPEAIFDVQIKRLHEYKRQHLGLLHILHCYKRVRDNPDdAS 568
                    *******************************************************************************************87356 PP

                    ---EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEESS CS
  Phosphorylase 481 vvprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigtlD 576
                    ++pr+++fg+ka    +lAk+ii  in+va+vvnndp v+dklkvvf+++y++++ae +ipaadlseqistag+eASGTgnmk++lnGaltigtlD
     EHT98993.1 569 MIPRVFLFGAKA----YLAKNIIYAINKVADVVNNDPLVGDKLKVVFMPDYRITAAEYLIPAADLSEQISTAGHEASGTGNMKLALNGALTIGTLD 660
                    ***********9....69****************************************************************************** PP

                    TCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--HHHHHHH-HHHHHHHHHHHCTTTTTTSTTTTHHHHHHHCTCC-TT-CHHHHHHHHHHHHHHH CS
  Phosphorylase 577 GanvEiaeevgeenifiFGltaeeveelkkkgynpkelyekdpelkevldalesgtfsekekeefkelvdsllekkDeylvlaDfesYveaqekve 672
                    GanvEiae+vgeenifiFG+t++ev++lk++gy+p+++ ++++el+e+l  l++g+fs+++k++f+ +++sl+++ D +lvlaD+++Yv+aq++ve
     EHT98993.1 661 GANVEIAEQVGEENIFIFGHTVDEVKALKAAGYKPQKIRKHNKELDELLTSLKKGKFSNGDKHAFDLMLESLTKNGDPWLVLADYQAYVDAQKRVE 756
                    ************************************************************************************************ PP

                    HHHCSHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTT CS
  Phosphorylase 673 eaYkdkkewakksilniaksgkFssDrtikeYaeeiWk 710
                    + ++d+++w++ +iln+a++g+FssDr+i++Y+++iW+
     EHT98993.1 757 ALWRDQEAWTRAAILNTARAGFFSSDRSIRDYQQRIWQ 794
                    *************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.71
# Mc/sec: 3373.93
//
Query:       EHT98994.1  [L=252]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-54  182.6   0.0    6.9e-54  182.1   0.0    1.2  1  DeoRC            DeoR C terminal sensor domain
    1.3e-23   82.5   0.1    2.5e-23   81.6   0.1    1.5  1  HTH_DeoR         DeoR-like helix-turn-helix domain
    2.9e-06   27.1   0.0    5.3e-06   26.3   0.0    1.4  1  HTH_11           HTH domain
    2.6e-05   23.8   0.0    5.5e-05   22.7   0.0    1.6  1  GntR             Bacterial regulatory proteins, gntR family
     0.0023   17.9   0.0      0.011   15.7   0.0    1.8  2  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 
     0.0024   17.3   0.0     0.0032   16.9   0.0    1.2  1  CoA_trans        Coenzyme A transferase
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.037   14.0   0.0    1.4  1  DUF977           Bacterial protein of unknown function (DUF97
      0.028   14.0   0.0      0.063   12.9   0.0    1.6  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
      0.036   14.1   0.0      0.064   13.3   0.0    1.4  1  Put_DNA-bind_N   Putative DNA-binding protein N-terminus
      0.046   13.6   0.0      0.081   12.8   0.0    1.4  1  TFIIE_alpha      TFIIE alpha subunit
      0.063   13.3   0.1       0.26   11.3   0.0    2.0  2  HTH_Crp_2        Crp-like helix-turn-helix domain
        0.1   12.2   0.1       0.14   11.7   0.1    1.2  1  DDRGK            DDRGK domain
       0.12   12.7   0.0       0.22   11.8   0.0    1.4  1  HTH_Tnp_Tc3_2    Transposase


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.0     5e-57   6.9e-54       4     160 .]      76     232 ..      74     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 5e-57
       DeoRC   4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgang 102
                 +eK+rIA+++a+ i+dg+t+f+d+GtT +++a+aL  +++l+vvTn+lnva+ L+ k+d++vi++GGevr+++++++g++++++++qf++d+ +lg++g
  EHT98994.1  76 AEKARIAQRVASQIPDGATLFIDIGTTPEAVAHALLGHSDLRVVTNNLNVAMLLMGKPDFRVIIAGGEVRTRDGAVMGEATLDFISQFRLDYGILGISG 174
                 79************************************************************************************************* PP

       DeoRC 103 idaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 id +g+l+++d++e+++kra+ie++r v+l++D+sKfg++a+v++++++++d+l tDk
  EHT98994.1 175 IDMDGSLLEFDYHEVRTKRAIIENSRCVMLVVDHSKFGRNAMVNLGNMSQLDYLYTDK 232
                 ********************************************************96 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.1   1.8e-26   2.5e-23       1      56 [.       6      61 ..       6      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.8e-26
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                R+++i++l+++qg++s+eelv++++vS++TiRRDLn L+ q+++ R+hGGa+++ss
  EHT98994.1  6 RHDAIIDLVRRQGYVSTEELVDHFEVSPQTIRRDLNDLADQNKIQRHHGGAALPSS 61
                9***************************************************9987 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.8e-09   5.3e-06       1      42 [.       6      46 ..       6      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.8e-09
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeel 42
                R  +i+ l+ + +g++s eeL ++++vS +t+rrd+ +L ++
  EHT98994.1  6 RHDAIIDLV-RRQGYVSTEELVDHFEVSPQTIRRDLNDLADQ 46
                556788888.77788***********************9765 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     4e-08   5.5e-05      26      61 ..      21      56 ..      11      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4e-08
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                s +eL++ f+Vs +t+R+ L+ L+ ++ ++r++g++
  EHT98994.1 21 STEELVDHFEVSPQTIRRDLNDLADQNKIQRHHGGA 56
                568******************************987 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.65     9e+02      54     109 ..      44      99 ..       2     106 .. 0.59
   2 !   15.7   0.0   7.9e-06     0.011     117     191 ..     154     233 ..     149     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.65
  AcetylCoA_hydro  54 kkkllidlavg.avlsagPeeevleekda.vlyrpapkqvgellrkainqglvsfvdk 109
                        + +i+  +g a l      e ++++d  +++   +  + + ++++i +g+  f+d+
       EHT98994.1  44 ADQNKIQRHHGgAALPSS--SENTAWQDRkMMWSAEKARIAQRVASQIPDGATLFIDI 99 
                      334444444441333333..34444444313455567778888888888888888875 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.9e-06
  AcetylCoA_hydro 117 klekgfvp...iDvalieataldedG.ylnlGvg.vrakKviiEvaelvvivvkknpPrvngydelialdkvdyivvdpe 191
                      + + +f++   +D+ ++  + +d dG  l +    vr+k++iiE    v+ vv++    +n++  l  ++++dy+  d  
       EHT98994.1 154 EATLDFISqfrLDYGILGISGIDMDGsLLEFDYHeVRTKRAIIENSRCVMLVVDHSKFGRNAMVNLGNMSQLDYLYTDKM 233
                      55667777777***************445666445****************************************99984 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.3e-06    0.0032       3     112 ..      80     176 ..      78     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.3e-06
                 HHHHHHCTT--TTEEEEE-SBTTBT.HHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHH CS
   CoA_trans   3 taaeavakeikdGmtvavGGFglig.iPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtl 100
                 ++a++va +i+dG+t+++     ig +Pea ++al+    +dl v++++  v    +ll+ +   +vi+ +gge   +r++  ++ ge ++++++q  +
  EHT98994.1  80 RIAQRVASQIPDGATLFID----IGtTPEAVAHALLGH--SDLRVVTNNLNV---AMLLMGKPDFRVII-AGGE---VRTRDGAVMGEATLDFISQ-FR 164
                 6899***************....999**9999999876..999999999777...44444444444444.4666...7777777888888885554.55 PP

                 HHHHHHHHHTEE CS
   CoA_trans 101 aerlraGgaglp 112
                 ++   +G +g++
  EHT98994.1 165 LDYGILGISGID 176
                 566666666666 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.7e-05     0.037      15      92 ..       8      91 ..       2      95 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
      DUF977 15 eriiGlvkkneritisdleritGvgrtsvrkylvdvlerGdlirpGkyGvfrdervvrvw..rk...aaekat.dqtlirklpd 92
                + ii lv++++ + +++l+  + v  +++r+ l d  ++  + r+     + +      w  rk   +aeka   q +  ++pd
  EHT98994.1  8 DAIIDLVRRQGYVSTEELVDHFEVSPQTIRRDLNDLADQNKIQRHHGGAALPSSSENTAWqdRKmmwSAEKARiAQRVASQIPD 91
                679********************************9999999886433333333333334223322245665324555566666 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.063     161     226 ..      58     119 ..      10     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
  Methyltransf_28 161 lpklskrlkaleegsrieispeaeallediaerlakegGaaLiiDYgesssepngtLrairkhklv 226
                      lp+ s++     +++++ +s e   +++++a+ ++   Ga L+iD g++ +++   L ++++ ++v
       EHT98994.1  58 LPSSSENT--AWQDRKMMWSAEKARIAQRVASQIPD--GATLFIDIGTTPEAVAHALLGHSDLRVV 119
                      44444443..3677888999999*************..**********667777777777666665 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.7e-05     0.064      25      49 .]      17      41 ..       8      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.7e-05
                    --EE-HHHHHHHCTS-HHHHHHHHH CS
  Put_DNA-bind_N 25 veriSSteLaealgvtaaqvRKDLS 49
                    + ++S +eL +  +v++ ++R+DL+
      EHT98994.1 17 QGYVSTEELVDHFEVSPQTIRRDLN 41
                    459*********************7 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-05     0.081      15      69 ..       7      67 ..       2      90 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEE......TTTEE CS
  TFIIE_alpha 15 avlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrd......eeksw 69
                 +  ++d + ++g v+ e+l  + ++ ++ +r+ Ln+L ++  ++ +          e++ w
   EHT98994.1  7 HDAIIDLVRRQGYVSTEELVDHFEVSPQTIRRDLNDLADQNKIQRHHGGAalpsssENTAW 67
                 66799**********************************9877766544455555566666 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.26      21      54 ..      19      52 ..       3      58 .. 0.84
   2 ?   -1.7   0.0       2.1   2.9e+03      31      42 ..      99     110 ..      99     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrg 54
                 ++ eel ++  ++++t+ r l++L +++ i+r+
  EHT98994.1 19 YVSTEELVDHFEVSPQTIRRDLNDLADQNKIQRH 52
                5799*************************99964 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
                 TTSSHHHHHHHH CS
   HTH_Crp_2  31 lGltretvsril 42 
                 +G+t+e v  +l
  EHT98994.1  99 IGTTPEAVAHAL 110
                 578888776665 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0001      0.14     100     144 ..       6      50 ..       1      51 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS- CS
       DDRGK 100 lleefinyikekKvvlleelavkfklktqevierikeLeeqgslt 144
                   + +i+ ++ + +v  eel  +f+++ q ++  +++L +q++++
  EHT98994.1   6 RHDAIIDLVRRQGYVSTEELVDHFEVSPQTIRRDLNDLADQNKIQ 50 
                 56789*************************************996 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.22       2      40 ..       8      41 ..       7      44 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
  HTH_Tnp_Tc3_2  2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLr 40
                   ++I+ lvr++ +++ +eL+ ++     +vs +Tirr L 
     EHT98994.1  8 DAIIDLVRRQGYVSTEELVDHF-----EVSPQTIRRDLN 41
                   79********************.....*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1928.09
//
Query:       EHT98995.1  [L=272]
Description: putative intramembrane serine protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-28   97.5  15.1    7.1e-28   97.5  15.1    1.6  2  Rhomboid    Rhomboid family
    7.5e-27   93.3   0.2      1e-26   92.9   0.2    1.2  1  Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine 


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.35   3.1e+03     108     120 ..      98     110 ..      82     122 .. 0.48
   2 !   97.5  15.1   7.9e-32   7.1e-28       2     148 ..     128     269 ..     127     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.35
                 CCCCCCCCCHHHC CS
    Rhomboid 108 llfillnlvlgll 120
                 ++++++ +v++l+
  EHT98995.1  98 VVMLACIAVFILM 110
                 2222222222222 PP

  == domain 2  score: 97.5 bits;  conditional E-value: 7.9e-32
                 GGCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS--- CS
    Rhomboid   2 lkrgelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaesesplvGaSGaifgllgallvlvprnrkllrkl 100
                 +++ e+wr++++++lH+++lH+lfN+++++++G  +e+rlGs +++++ l+s+l+++ l++ fs      + G+SG++++l+g++++++ r +++   l
  EHT98995.1 128 DQHFEVWRWFSHALLHFSLLHILFNLMWWWYLGGAVEKRLGSGKLFVILLISALLSGWLQAKFSGI---WFGGLSGVVYALMGYCWLRGERDPESGICL 223
                 6899************************************************************99...8************************99999 PP

                 -HC...CCCCCCCCCCHHHCTSS.STTTHHHHHHHHHHHHHHHHHHCCH CS
    Rhomboid 101 iiallllllfillnlvlgllpra.ggvsnlAHlgGllaGlllgllllrr 148
                       l+ f+l+ lv+g+++ +  +++n+AH+gGll+Gl+++++  r+
  EHT98995.1 224 ERG---LIGFALVWLVVGWFGAFgLAIANAAHVGGLLVGLAMAFVDTRK 269
                 999...44444444444444444446*****************998776 PP

>> Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.2   1.1e-30     1e-26       3      84 ..       2      81 ..       1      83 [. 0.94

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 1.1e-30
  Rhomboid_N  3 lLlslenpraaqafidYlrsqgiklelrseeegvqlwledeeqlaqveaeleeFlqnPedekYqqAsWetgetsssslkykk 84
                +++++++pr+aqaf+dY++++g+kl++++e++ v ++l de+ql+ ve+el++F+++P++++Yq+AsW++g+t +s l+y++
  EHT98995.1  2 RITQFNQPRMAQAFVDYMATRGVKLRIEHESHYV-IVLDDESQLSMVENELQAFVRDPNHPRYQAASWQSGKT-DSGLRYER 81
                899***************************7775.7888**********************************.99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2334.14
//
Query:       EHT98996.1  [L=108]
Description: thiosulfate:cyanide sulfurtransferase (rhodanese) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-11   44.7   0.0    2.2e-11   44.2   0.0    1.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   1.2e-15   2.2e-11       3     106 ..      10      97 ..       8      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.2e-15
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGf 101
                 ++++++le+g+v l+D+R+++ ++ gh +gA+++          s+++l++ +        d   +v v c +g++++ aa  l   G+ + + +dGGf
  EHT98996.1  10 HQAQAHLEQGAV-LVDIRDAQSFALGHARGALHL----------SNSNLNDFIST-T----DMSLPVLVMCYHGNSSKGAADYLHGQGFATAYSIDGGF 92 
                 578889999985.*********************..........33333333333.3....458************8888777777***99******** PP

   Rhodanese 102 kawke 106
                 +aw +
  EHT98996.1  93 DAWRA 97 
                 ***87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 957.63
//
Query:       EHT98997.1  [L=501]
Description: aerobic FAD/NAD(P)-binding sn-glycerol-3-phosphate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-47  162.1   0.5    6.6e-47  160.8   0.0    1.8  2  DAO            FAD dependent oxidoreductase
    3.8e-14   52.7   0.0    8.3e-14   51.5   0.0    1.6  1  DAO_C          C-terminal domain of alpha-glycerophosphate ox
      0.002   17.3   3.5       0.53    9.3   3.9    2.2  2  FAD_binding_2  FAD binding domain
     0.0067   16.6   0.8      0.027   14.7   0.8    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.011   15.0   0.2       0.04   13.1   0.2    1.9  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
       0.02   14.8   0.1      0.032   14.1   0.1    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.24   10.4   1.5        0.4    9.7   1.5    1.3  1  Lycopene_cycl  Lycopene cyclase protein
       0.39    9.8   2.2       0.55    9.2   2.2    1.2  1  GIDA           Glucose inhibited division protein A
       0.48    9.7   5.1       0.33   10.3   3.1    1.7  2  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   3.3e-50   6.6e-47       1     315 [.       5     323 ..       5     359 .. 0.80
   2 ?   -0.8   0.2      0.45   8.9e+02     101     156 ..     445     493 ..     358     495 .. 0.58

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 3.3e-50
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 d+++iGGGi G+++A ++a rg  V+ le++ ++++++S+++s+l+h+glryl+++ e+ rl+ eal+e++ l +  +++i ++++  l+    ++ ++
  EHT98997.1   5 DLIVIGGGINGAGIAADAAGRGlsVLMLEAR-DLACATSSASSKLIHGGLRYLEHY-EF-RLVSEALAEREVLLKM-APHIAFPMRFRLPHR--PHLRP 97 
                 789****************************.6677******************87.76.***************9.9*************4..44799 PP

                 HHHHHHHHH......HHTTTTEEEEEHHHHHHHSTT...STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EE CS
         DAO  98 aldkllall......leagldaelldaeevrelepa...lpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve..rt 185
                 a+ ++ +l       +    ++  l +++ +   p     p+++ ++ y d  +vd+a+++   a+++ ++G+e++++t+vt+  + ++++w ve  + 
  EHT98997.1  98 AWMIRTGLFmydhlgK----RT-SLPGSKSLTFGPDsalKPEIKRGFEYSD-CWVDDARMVVLNAQEVVKHGGEVRTRTRVTRAWR-ENGLWMVEaeD- 188
                 9998888877643331....22.3444444444444332228999999999.899****************************844.4578***7742. PP

                 CT.EEE.E.EEEEEEE--GGGHH.HH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSS. CS
         DAO 186 tp.gen.d.aadavVnaaGawsd.ll.gll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgddd. 277
                  + g + + +a+ +VnaaG+w++ ++ ++l  + +  i+ ++g+++v+ ++++     ++++ ++  ++d+r v+v+p+ d   ++G+t++e +gd   
  EHT98997.1 189 IDsGKTlTwQAKGLVNAAGPWVKqFFdDGLaLKSPYGIRLIKGSHIVVPRVHN-----EKQAYIL-QNEDNRIVFVIPWMDEFSIIGTTDVEYKGDPKn 281
                 2335543354466*********977775555334579999********44443.....3455566.7889**********998999****955555545 PP

                 TSCSHHHHHHHHHHHHHHSGG.G..CGEEEEEEEEEEE.TTS CS
         DAO 278 pevdeedidellealrklfPq.l..gdvlrkwaGlrpl.pdg 315
                 +++d+++id++l+  + +f + l  +d++++++G+rpl +d+
  EHT98997.1 282 VAIDDNEIDYILKVYNSHFKKqLtpDDIVWTYSGVRPLcDDE 323
                 9******************77457789**********53544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.45
                 HHHHHHHHTTTTEEEEEH.HHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHH CS
         DAO 101 kllallleagldaellda.eevrelepalpgllgalfypdtgqvdpakltaalaraa 156
                 + +++ l++ +++e++++ +   +++   ++++ +++  ++ q   a+ + +la++a
  EHT98997.1 445 EFYEAELRYLVQHEWVREvD--DAIW---RRTKQGMWLNEAQQ---ARIAEWLAEKA 493
                 33333344555666665522..2333...36777888888544...66777777766 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   4.1e-17   8.3e-14       3     107 ..     381     483 ..     379     496 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 4.1e-17
                 TTS---TT--..........TT-STTHT.--HHHHHHHHHHHGGGHHHHHHHHHHTH...HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HH CS
       DAO_C   3 TkklpLvGaenw...sknlaaelaqeyg.ldeevaehLaerYGsraeevlelakedekpelaerlspelpyieaevvYavrhEmartlvDvlaRRtrla 97 
                 Tk++ L+G++ +   s+++aa+l ++y  ++e++a+h +++YGs++e +l+ a + e    +   ++ +++ eae++Y v+hE +r+++D + RRt+  
  EHT98997.1 381 TKNCVLPGGN-IsgtSDDYAASLRRRYPfITENMARHYSRTYGSNTELLLNDATSLE----DLGENFGHEFYEAELRYLVQHEWVREVDDAIWRRTKQG 474
                 9********9.446699**********76999******************4444444....455677899***************************99 PP

                 HH-HHHHHHH CS
       DAO_C  98 fldadaalea 107
                 +   ++a++a
  EHT98997.1 475 MW-LNEAQQA 483
                 98.5665554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   3.9   0.00027      0.53       1      37 [.       5      41 ..       5      53 .. 0.84
   2 !    5.4   0.0    0.0042       8.3     137     203 ..     145     210 ..     126     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00027
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   D+iViG+G+ G   A+ aa +Gl+v+++e  +    +
     EHT98997.1  5 DLIVIGGGINGAGIAADAAGRGLSVLMLEARDLACAT 41
                   89***************************98873333 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0042
                    ..HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----G CS
  FAD_binding_2 137 lvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfg 203
                    +v+  ++++  ++++ k+g ++++rt++++  + +++   +++e+ +sg++ + +ak++v a+g + 
     EHT98997.1 145 WVDDARMVVLNAQEVVKHGGEVRTRTRVTRAWR-ENGLWMVEAEDIDSGKTLTWQAKGLVNAAGPWV 210
                    8889999************************88.667777888999****************99776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.8   1.4e-05     0.027       1      33 [.       8      40 ..       8      67 .. 0.81
   2 ?   -2.6   0.0       3.4   6.7e+03      31      46 ..     351     367 ..     349     380 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGG 33
                   ++G+G+ G+ +A+ +a +g++vl le+rd  + 
     EHT98997.1  8 VIGGGINGAGIAADAAGRGLSVLMLEARDLACA 40
                   8***************************87654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.4
                    SSGGG-EECE.TTCEEC CS
  NAD_binding_8  31 lGGraasyev.pgvrvd 46 
                    +GG++++y+   +++ +
     EHT98997.1 351 FGGKLTTYRKlAEHAME 367
                    79999999865445444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     2e-05      0.04       1      49 [.       4      52 ..       4     258 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgv 49
                 kd++viGgG+ G   a ++a  g+ v+++e+++         sk ++g 
   EHT98997.1  4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEARDLACATSSASSKLIHGG 52
                 5899************************974443333334444444443 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.6e-05     0.032       3      39 ..       7      43 ..       5      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdiseealekal 39
                 viG G+ Gagiaa +a +gl+V +++ ++ a +++ 
  EHT98997.1  7 IVIGGGINGAGIAADAAGRGLSVLMLEARDLACATSS 43
                59************************99887766554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5    0.0002       0.4       1      35 [.       5      37 ..       5      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0002
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   D++viG+G  g  +Aa    a  gl+v+++ea + 
     EHT98997.1  5 DLIVIGGGINGAGIAADA--AGRGLSVLMLEARDL 37
                   9*****************..***********9775 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.2   0.00028      0.55       1      31 [.       5      35 ..       5      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00028
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                d+iViGgG  G   A+ aa +G++vl++  +
  EHT98997.1  5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAR 35
                689************************9443 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.1   0.00016      0.33       1      32 [.       5      36 ..       5      44 .. 0.96
   2 ?   -2.5   0.0       1.2   2.4e+03      93     142 ..     156     205 ..     137     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  D++V+GGg+ G   A  Aa +G +vl++e r+
    EHT98997.1  5 DLIVIGGGINGAGIAADAAGRGLSVLMLEARD 36
                  99***************************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
  FAD_oxidored  93 leemlaeagvtvllntrlvevekegkriesvtveske.g.rktirAkvfiDA 142
                   ++e+++  g +v + tr++++ +e+  ++ v++e+ + g + t +Ak  + A
    EHT98997.1 156 AQEVVKH-GGEVRTRTRVTRAWREN-GLWMVEAEDIDsGkTLTWQAKGLVNA 205
                   4455544.88999999999999986.89999999888777888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3616.73
//
Query:       EHT98998.1  [L=430]
Description: glucose-1-phosphate adenylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-67  225.8   0.0    7.3e-67  225.5   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    3.8e-08   33.8   0.0    6.5e-08   33.1   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
     0.0094   14.9   0.1       0.87    8.5   0.1    2.2  2  Fucokinase       L-fucokinase
  ------ inclusion threshold ------
       0.39   10.5   0.1       0.39   10.5   0.1    2.6  3  Hexapep          Bacterial transferase hexapeptide (six repea


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.5   0.0   1.6e-70   7.3e-67       2     246 ..      22     291 ..      21     293 .. 0.94

  Alignments for each domain:
  == domain 1  score: 225.5 bits;  conditional E-value: 1.6e-70
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT.......SEEEEEEESS--.... CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg.......vevlialepegk.... 84 
                      a++LaGG+GtRL +Lt ++ak++v+++gk r+i++ ls+++nsgi++ i v+tq++s+++ +++++g+ +        v++l+a+++ +     
       EHT98998.1  22 ALVLAGGRGTRLVDLTAKRAKPAVHFGGKFRIIDFALSNCLNSGIRR-IGVITQYQSHTLTQHIQRGWSVFneemnefVDLLPAQQRFSTehwy 114
                      89*********************************************.9******************765589*****8888888887777788 PP

                      .BGGHHHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSH...... CS
  NTP_transferase  85 .gtAdAvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeaka...... 171
                       gtAdAv+++++++++++  ++v++L+gDh++k++y++++ +++ ++a++t+++++vpv+eat++Gv+ +de+++v++fvEKP +++       
       EHT98998.1 115 rGTADAVTQNLDVIRRYN-AQYVVILAGDHIYKMDYSRMLLDHVLNDARCTIACLPVPVAEATAFGVMAVDENNKVIDFVEKPPKPPTmpgddt 207
                      8***************99.6******************************************************************999***** PP

                      CSEECCSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE.........-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 172 selassGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae.........yWsDvGtldslleanekla 246
                      ++las+GiYvf+ e+l  l++ dl++  +++d+++dilpk++e+g+  +   f  ++         yW+DvGtl+++++an +la
       EHT98998.1 208 KSLASMGIYVFDAEYLYGLLEdDLHQAGSSHDFGKDILPKVVESGEGYAH-SFAISCvqndheappYWRDVGTLEAYWRANLDLA 291
                      99******************************************987654.555545678889******************9986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.4e-11   6.5e-08       1     119 [.      22     166 ..      22     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.4e-11
                   EEEEEESS-TTT.....TTTHHHHCCCCC.CHHHHHHHHHCTT.-CEEEEECSH..CHHHH.................HHTTCTS-EEE-TTSS-SH CS
  NTP_transf_3   1 aviLAGGrSsRm.....ggdKallplggk.pllervldalraagvdevvvvggd..eevla.................alarlgvrvvededpgkgp 72 
                   a++LAGGr++R+     ++ K+ + +ggk ++++ +l +   +g++++ v++++  + +++                 +l +   + ++ e++++g+
    EHT98998.1  22 ALVLAGGRGTRLvdltaKRAKPAVHFGGKfRIIDFALSNCLNSGIRRIGVITQYqsHTLTQhiqrgwsvfneemnefvDLLPA-QQRFSTEHWYRGT 117
                   79**********7777557*******99989*********************9943333334555666555555554433333.344666789**** PP

                   HHHHHHHHHHH...SSSCEEEEETT-TT--HHHHHHHHHCH.HHHTSSEE CS
  NTP_transf_3  73 laslaaalraaa..dadavlvlacDmPlltpelverllaaa.aasgadvv 119
                   + ++   l+ ++  +a++v++la+D+++ + +  + ll++   ++++ ++
    EHT98998.1 118 ADAVTQNLDVIRryNAQYVVILAGDHIY-KMDYSRMLLDHVlNDARCTIA 166
                   ********9866679***********98.555555555554222234444 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0034        15      49     118 ..     133     197 ..     114     228 .. 0.81
   2 !    8.5   0.1   0.00019      0.87     271     332 ..     340     398 ..     309     409 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0034
  Fucokinase  49 kpGvlvtssDvlllfdseeisfdka....gvtalavpstldigtnHGVfvlddqsseeeeleirsvkkflhKps 118
                    v+++++D +  +d + + +d+       t+  +p +++ +t  GV+ +d++         ++v +f+ Kp 
  EHT98998.1 133 AQYVVILAGDHIYKMDYSRMLLDHVlndaRCTIACLPVPVAEATAFGVMAVDEN---------NKVIDFVEKPP 197
                 56689999****988888887777666658888889******************.........78888888875 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00019
  Fucokinase 271 kesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelesseeslelpddtilqt 332
                  +++vv+nSv+ s+v+v+  + i +  l ++v +g  + +  + +++    + lp+ +++ +
  EHT98998.1 340 ISGSVVVNSVMFSRVRVNSFCNIDSTVLLPDVVVGRSCRLRRCVIDRA---CVLPEGMVIGE 398
                 578999***************************************985...57999998865 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.6      0.46   2.1e+03      25      34 ..     337     346 ..     331     349 .. 0.56
   2 ?   10.5   0.1   8.6e-05      0.39       6      32 ..     358     383 ..     353     386 .. 0.83
   3 ?    0.6   0.0      0.12   5.4e+02       8      25 ..     382     399 ..     379     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.46
                 TEEEETTEEE CS
     Hexapep  25 nvkIgagvvi 34 
                 +++I   vv+
  EHT98998.1 337 GCIISGSVVV 346
                 3555444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.6e-05
                 TTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep   6 snvlIgpfaviggnVkIGdnvkIgagv 32 
                 s + I+  +v++++V++G+ +++ ++v
  EHT98998.1 358 SFCNID-STVLLPDVVVGRSCRLRRCV 383
                 557777.78999***********9987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.12
                 EEE-TTEEEETTEEE-TT CS
     Hexapep   8 vlIgpfaviggnVkIGdn 25 
                 ++I+  +v+ ++ +IG+n
  EHT98998.1 382 CVIDRACVLPEGMVIGEN 399
                 899999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3272.98
//
Query:       EHT98999.1  [L=666]
Description: glycogen debranching enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-40  134.5   0.6      2e-39  133.3   0.6    1.7  1  GlgX_C         Glycogen debranching enzyme C-terminal domain
    8.4e-20   70.9   0.0    2.1e-19   69.6   0.0    1.7  1  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t
    2.6e-17   63.4   0.0    3.1e-08   33.6   0.0    2.4  2  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> GlgX_C  Glycogen debranching enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.6   3.3e-43     2e-39       1      85 []     579     663 ..     579     663 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 3.3e-43
      GlgX_C   1 qegDgnvqWLnaegqplsaeeWeqgakrlqilLsdrwLitlnateevaelvLPeGeWravpPfagednpvvlavWhgpahgvCvf 85 
                 q++Dgnv+WL+++g+p+++  W+qg++rlqilLs++wLit+nat+  ++++LP+GeW+++pPf+ge+np+ l+vWhgpah+vCvf
  EHT98999.1 579 QNEDGNVEWLDDQGKPVDEGGWKQGMRRLQILLSGCWLITINATDTQCDIALPDGEWHVLPPFTGECNPIRLTVWHGPAHAVCVF 663
                 789*********************************************************************************8 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   3.5e-23   2.1e-19       1      84 []      17     103 ..      17     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 3.5e-23
                 TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT....S....CEEEE--TT- CS
      CBM_48   1 plGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps....g....ekklllDPya 84 
                 plGa+++++  gvnf++++ +Ae+V+l+l+++n  +++++l   r+g++W+ +lpg  p g +rY+yrv gp+    g    + +ll+DP+a
  EHT98999.1  17 PLGASYDGK--GVNFTLFSHHAERVELCLFDENGLEQRVELP-ARSGDIWHGYLPGVQP-G-QRYGYRVYGPWapqaGhvfnPARLLVDPCA 103
                 79****887..**********************99*******.69**********7777.7.6**********998856777********97 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   5.1e-12   3.1e-08      10      82 ..     191     280 ..     190     310 .. 0.80
   2 !   27.2   0.0   4.3e-10   2.6e-06     143     333 ..     313     530 ..     291     535 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 5.1e-12
                    CCCCCCCT-SCEEE-B-CE..........-S-TTTTSS-SCECCE-CCC--CCC.......CCCHHHHHHCTT-EEEEEE--SC--TTSC CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk..........spqadhgYdiadytkidpefGtned.......lkeLiskahekgikvilDlVvNHtsdehe 82 
                    +dYl +LG+tai l P+ +            +++ gY      ++dp++   +d       +++ ++++h+ gi v+lD+V+NHt++  e
     EHT98999.1 191 IDYLLQLGITAIELLPVAHfaseprllrlGLTNYWGYNPFALWAVDPRYASGQDglsplqeFQQTVKRLHAAGIEVLLDVVFNHTAELDE 280
                    7****************9999******996668****************6544333333339***********************98665 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 4.3e-10
                    BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC................................HCCHCCHHHHHHHHHHHTCCG CS
  Alpha-amylase 143 dLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskveal................................esngeflheftqalnetvasr 205
                     Ln  +++v + + +++++w++   +dGfR D ++ +  +++                                 ++ g+f  +f++  +++ ++ 
     EHT98999.1 313 TLNLSHPQVMNWILEALRYWVRVChVDGFRFDLAPVLGREPDYhrdaalfeamracpilstvkliaepwdigpngYQVGNFPAQFAEWNDQFRDTA 408
                    6999******************999**************88889***************************7666555555555555555554444 PP

                    TT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-C..CCTTCEEES--TTS--HHHHTTSS CS
  Alpha-amylase 206 kevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkalee..aaeeavtflgnHDqeRilsrlgdd 299
                    + + + g v         ++   +   ++ +++    + + + ++  ++  +++++l +  +k  +a  e   +   +++  nH +e ++  +   
     EHT98999.1 409 RRTWLHGDVTM-------GDFVRRFAASSDLFQHNGRKPHASLNMITAHDGFTLRDLVSFSQKHNEANGEqnRDGHGNNYSHNHGTEGLVVSADVA 497
                    44444444444.......333344444444566677777777777777778888888887777666655534678899*********988666655 PP

                    TTTTHHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 300 saeaekklklaaillltlrGvpviYyGeEigmtg 333
                    + ++ ++++++++ ll+ +G+p+   G+E g t 
     EHT98999.1 498 Q-RRRRSTEALLTTLLLAQGTPMLLAGDERGQTQ 530
                    5.56899************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4701.03
//
Query:       EHT99000.1  [L=369]
Description: NAD(P)-binding aspartate-semialdehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-59  201.5   0.0    1.5e-59  201.2   0.0    1.1  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    5.1e-26   91.5   0.0      1e-25   90.5   0.0    1.5  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.0   1.7e-63   1.5e-59       1     184 []     145     354 ..     145     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.2 bits;  conditional E-value: 1.7e-63
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHH.........................HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTT CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkq.........................vaelqrsdeakpgvfgvpiagNlipyidkeedk 69 
                      L++L+++ + +e+v+vatyqa+SG+G++++reLl+q                         v++ +rs  +++++fgvp+ag+lip+idk++d+
       EHT99000.1 145 LGGLFAH-DLVEWVSVATYQAASGGGARHMRELLTQmgmlhdhvatslqnpasaildiersVTDFTRSGTLPTDNFGVPLAGSLIPWIDKQLDN 237
                      7899998.99************************************************************************************ PP

                      TCHCBHHHHHHHHHHHHHCTESC..SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCS.TTEEEEESS...HCHHSSHHHHTTCSSS CS
  Semialdhyde_dhC  70 gepetreelkavaetkkilefte..kvsatcvrVPvlrGhseavtiklklkdveveeveellaaa.pevkvvvne...eedrPtpaavaggtns 157
                      g  ++ree+k++aet+kil+++   +v ++cvrV++lr+hs+a+ +klk kd +++e+e+lla++ ++vkvv+n+   +++++tpaav+g t++
       EHT99000.1 238 G--QSREEWKGQAETNKILATPRviPVDGLCVRVGALRCHSQAFMLKLK-KDLPLAEIEQLLASHnEWVKVVPNDreiTMRELTPAAVTG-TLN 327
                      *..*****************99965555********************7.***************9***********************9.9** PP

                      EEEEEEEEETTCTTEEEEEEEEETTTT CS
  Semialdhyde_dhC 158 vsVGRirkdemgdeglklvvvgDNllk 184
                      ++VGR+rk++mg+e+l +++vgD+ll+
       EHT99000.1 328 TPVGRLRKLNMGPEYLSAFTVGDQLLW 354
                      *************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   1.1e-29     1e-25       1     120 [.       3     122 ..       3     123 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 1.1e-29
                     EEEEETTTSHHHHHHHHHHHC..TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS. CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee..hpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapklaeagv. 91 
                     +v++vG++G+vG++l+ +++e  +++v   v++s+s+ +G++    ++    +++ +++d  d+++lk++di+++++++++++e++pkl+++g+ 
      EHT99000.1   3 NVGLVGWRGMVGSVLMSRMSEerDFDVINPVFFSTSQ-HGEAAPTIAG----KQQGTLQDaFDIDALKALDIIITCQGGDYTSEVYPKLRASGWn 92 
                     79******************97788888888999999.9999999966....99******9********************************** PP

                     .EEEESSSTTTTSTTSEBE-HHHHGGGGGG CS
  Semialdhyde_dh  92 .kviDlssdfRlkddavyvlpevnreaikk 120
                      ++iD++s++R+kdda+++l++vn + i++
      EHT99000.1  93 gYWIDAASTLRMKDDAIIILDPVNHQVIRQ 122
                     *************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2838.40
//
Query:       EHT99001.1  [L=197]
Description: putative antibiotic transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-59  200.8  18.2    1.7e-59  200.6  18.2    1.0  1  MarC       MarC family integral membrane protein
    3.6e-06   26.8   0.6    3.6e-06   26.8   0.6    2.2  2  TerC       Integral membrane protein TerC family
  ------ inclusion threshold ------
       0.11   11.0   0.1       0.16   10.4   0.1    1.2  1  ST7        ST7 protein
        1.7    8.5   3.8        3.3    7.6   3.8    1.7  1  DUF1980    Domain of unknown function (DUF1980)
        1.9    8.2  13.7        1.1    9.0   3.6    2.3  2  Mntp       Putative manganese efflux pump
        5.7    7.5  13.2       0.33   11.4   2.2    2.9  2  DUF202     Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.6  18.2   5.7e-63   1.7e-59       2     201 ..       2     193 ..       1     195 [. 0.96

  Alignments for each domain:
  == domain 1  score: 200.6 bits;  conditional E-value: 5.7e-63
        MarC   2 kaiikafvsLlaiinplgnvpvflslleevskeerkrialkasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkakqkkekkkks 100
                 +++i+a+++Ll+i++plgn+p+f+s+l++ + ++r+ +  +++++al+i+l+fl++Ge il+++++++++++i+Gg++lfliai+m++++ +  + ++ 
  EHT99001.1   2 TEMISATILLLLIMDPLGNLPIFMSVLKHLEPKRRRVVLIREMLIALIIMLLFLFTGERILAFLNLRTETVSISGGVILFLIAIKMIFPSPE--SSSTG 98 
                 67899*************************************************************************************99..35555 PP

        MarC 101 eeeeseekdeiavvPLAlPliaGPgaittvlvlaseassivekvavvlaillaalitllilllsslilrllgktginaleRlmGllLvalavqlivdGi 199
                   +     +e+++vPLA+Pl+aGP+ ++t+++l++++ +  ++ ++v a+l+a+ +t++illls l+lrllg +g+naleRlmGl+L++la+q+++dGi
  EHT99001.1  99 LPA----GEEPFLVPLAIPLVAGPSLLATLMLLSHQYPN--QMSHLVGALLIAWGVTVMILLLSGLFLRLLGDKGVNALERLMGLILIMLATQMFLDGI 191
                 555....79*****************************9..9********************************************************* PP

        MarC 200 ke 201
                 + 
  EHT99001.1 192 RV 193
                 86 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.6   1.2e-09   3.6e-06      14      81 ..      20      91 ..       7     106 .. 0.89
   2 ?    3.9   3.7     0.013        38      33      80 ..     137     189 ..     119     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.2e-09
        TerC 14 NlvviallvkklpeeqqkkalllGilgAlvlRillillavallelf....dlilligglfLlytavkellek 81
                Nl +++ + k+l+++ ++ +l+  +l+Al++ +l+++++  +l+++    + + + gg++L+++a+k+++ +
  EHT99001.1 20 NLPIFMSVLKHLEPKRRRVVLIREMLIALIIMLLFLFTGERILAFLnlrtETVSISGGVILFLIAIKMIFPS 91
                8999999*************************************966667*******************975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.013
        TerC  33 alllGilgAlvlRillillavallel.....fdlilligglfLlytavkelle 80 
                  l+  +l+A+ + ++++ll    l+l     ++ +  + gl+L+++a++++l+
  EHT99001.1 137 HLVGALLIAWGVTVMILLLSGLFLRLlgdkgVNALERLMGLILIMLATQMFLD 189
                 44555666666666666666666666555555999999999999999999986 PP

>> ST7  ST7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   5.3e-05      0.16     467     511 ..     100     148 ..      84     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.3e-05
         ST7 467 Pkkelpffilftaglc...sftallallthqfPelmgalakavl.slll 511
                 P  e pf++ ++  l    s+ a l ll hq+P++m++l+ a+l ++ +
  EHT99001.1 100 PAGEEPFLVPLAIPLVagpSLLATLMLLSHQYPNQMSHLVGALLiAWGV 148
                 67777787777666642236788899*************9886514444 PP

>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.8    0.0011       3.3       7      53 ..      45      91 ..      41     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0011
     DUF1980  7 LlgFavllfkLhasgeiskYInpkyapllyfamvvllilalvqlira 53
                L+++ ++l+ L   ++i+ + n + ++ ++   v+l+++a+ +++ +
  EHT99001.1 45 LIALIIMLLFLFTGERILAFLNLRTETVSISGGVILFLIAIKMIFPS 91
                89999***********************************9988765 PP

>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.6   0.00036       1.1     112     152 .]      45      88 ..      37      88 .. 0.79
   2 ?    4.5   2.5    0.0088        26     107     151 ..     143     186 ..     122     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00036
        Mntp 112 lvtlvlsllGlllGrklgsllgkkae...ilGGliLiliGlkil 152
                 l++l+++ll l++G+++  +l+ ++e   i GG+iL li++k++
  EHT99001.1  45 LIALIIMLLFLFTGERILAFLNLRTEtvsISGGVILFLIAIKMI 88 
                 6889999999999999999666555411178***********96 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0088
        Mntp 107 vlliGlvtlvlsllGlllGrklgsllgkkaeilGGliLiliGlki 151
                 +++ G++ ++l l Gl+l r lg+   +  e l GliLi++++++
  EHT99001.1 143 LIAWGVTVMILLLSGLFL-RLLGDKGVNALERLMGLILIMLATQM 186
                 344577777777778776.89999999999999********9988 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   9.0       1.8   5.4e+03      32      56 ..      85     152 ..      42     155 .. 0.55
   2 ?   11.4   2.2   0.00011      0.33      11      63 ..     144     195 ..     142     197 .] 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
      DUF202  32 l...........................................tgepsalgkilglilivlgiltll 56 
                                                             ++ p+++++++g++li+ g+ +++
  EHT99001.1  85 IkmifpspessstglpageepflvplaiplvagpsllatlmllsHQYPNQMSHLVGALLIAWGVTVMI 152
                 14455555555555555555555555555555555555555555777777788888888888887776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
      DUF202  11 LaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvryl 63 
                 +aW  t + l+  gl+l  +  +++++al +++glili l++ ++l g++ yl
  EHT99001.1 144 IAWGVTVMILLLSGLFLRLL-GDKGVNALERLMGLILIMLATQMFLDGIRVYL 195
                 79*************99976.68888889*************99999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1691.60
//
Query:       EHT99002.1  [L=178]
Description: thermoresistant gluconokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-11   44.9   0.0    1.5e-11   44.7   0.0    1.1  1  SKI             Shikimate kinase
    4.3e-08   33.4   0.0    6.5e-08   32.8   0.0    1.3  1  AAA_33          AAA domain
    2.1e-07   31.6   0.0    2.8e-07   31.1   0.0    1.1  1  AAA_18          AAA domain
    2.4e-06   27.5   0.0      3e-06   27.2   0.0    1.1  1  APS_kinase      Adenylylsulphate kinase
    0.00036   21.0   0.0    0.00048   20.5   0.0    1.5  1  AAA_16          AAA ATPase domain
     0.0032   17.7   0.0     0.0063   16.8   0.0    1.7  2  AAA_22          AAA domain
     0.0067   16.3   0.0       0.27   11.1   0.0    2.1  2  dNK             Deoxynucleoside kinase
     0.0094   15.7   0.2      0.021   14.6   0.0    1.6  2  Cytidylate_kin  Cytidylate kinase
  ------ inclusion threshold ------
       0.01   15.1   0.0       0.01   15.1   0.0    1.2  1  DUF2075         Uncharacterized conserved protein (DUF2075)
      0.023   14.2   0.1       0.23   10.9   0.0    2.1  2  AAA_7           P-loop containing dynein motor region
      0.027   13.8   0.0      0.045   13.1   0.0    1.3  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.032   14.2   0.0      0.097   12.7   0.0    1.8  2  AAA_5           AAA domain (dynein-related subfamily)
      0.039   14.4   0.0       0.08   13.4   0.0    1.7  1  AAA_17          AAA domain
      0.086   12.7   0.0       0.17   11.8   0.0    1.4  1  RsgA_GTPase     RsgA GTPase
      0.096   12.2   0.0        1.9    8.0   0.0    2.0  2  Ploopntkinase1  P-loop Nucleotide Kinase1


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.3e-14   1.5e-11       1     157 [.      17     171 ..      17     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.3e-14
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCS.....SEEEEE-TTGGGSHHHHHHHH...HHSEEEEE CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleee.....glViatGGGavlseenrellk...ekgiviyL 91 
                 +G+GKs v+++++++l+  f+D D l+ +++  ++ae    +  +++r  + ++l++ +         ++i +   ++l++ +r++l+   ++  ++yL
  EHT99002.1  17 SGSGKSVVANRVSHQLNTAFLDGDFLHPRANILKMAEGHPLD--DNDRLPWLQALNDAAFAMqrtqaISIIVC---SALKKHYRDMLRqgnDNLRFVYL 110
                 59**************************99999999999877..999********987543335344456666...9***********8877778**** PP

                 E--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI  92 dvsleellerlkadkeRPllqekskeeelleelaereplyeeaadvvvdeseeskeevaeeileal 157
                 + +++++ +rlka+k     +  +++  ++++   +ep  +e++   vd +++  +ev++  ++++
  EHT99002.1 111 KGDFDTIESRLKARKG----HFFKPQMLVTQFATLEEPGADETDVLAVDITHSL-DEVVAATVATI 171
                 ****************....66677445555555899*************9999.67777666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   5.4e-11   6.5e-08       1     121 [.      10     127 ..      10     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 5.4e-11
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg..tdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgv 97 
                 +++l G++GsGKs +a r+  +l + +l+ d l+ r       + ++ d ++ l+ + q ln+ a  +++  +  i+    l+++ r+ +++       
  EHT99002.1  10 VFILMGVSGSGKSVVANRVSHQLNTAFLDGDFLHPRANIlkMAEGHPLDDNDRLP-WLQALNDAAFAMQRTQAISIIVCSALKKHYRDMLRQGND---- 103
                 7899****************************99988885533334445444443.666777888888888888888999999999998888776.... PP

      AAA_33  98 pvrivvvetdeetlkeRlakRaan 121
                 + r v+++ d +t+++Rl++R+ +
  EHT99002.1 104 NLRFVYLKGDFDTIESRLKARKGH 127
                 799******************987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.4e-10   2.8e-07       2     116 ..      12     127 ..      12     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.4e-10
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss..aleegknlvidghlaeleseaakdikk. 96 
                 +l+G++G+GK+ +a+++s        l+  + +++ l ++ +  +  e + ld++ +  +l+al+ ++    ++++ ++++ + l +++ +++++++  
  EHT99002.1  12 ILMGVSGSGKSVVANRVSHQ------LNTAFLDGDFLHPRANIlKMAEGHPLDDNDRLPWLQALNDAAFamQRTQAISIIVCSALKKHYRDMLRQGNDn 104
                 699**************887......69999999999999999***********************8778888888888***************9999* PP

      AAA_18  97 ...vvLtaspeelleRlekRgye 116
                    v+L+ + ++   Rl++R+ +
  EHT99002.1 105 lrfVYLKGDFDTIESRLKARKGH 127
                 ********************865 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.5e-09     3e-06       4     117 ..      10     120 ..       7     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.5e-09
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCHTEE CS
  APS_kinase   4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleealkf 102
                 v+ l G+sgsGKs +an+++++L++       L       ++ ++ + +++dR   ++ +   a  ++++ +i+++   +  ++ R++ r+  ++   +
  EHT99002.1  10 VFILMGVSGSGKSVVANRVSHQLNTAFLDGDFLHPRANILKMAEGHPLDDNDRLPWLQALNDAAFAMQRTQAISIIVCSALKKHYRDMLRQGNDN---L 105
                 67799***************999866555555544444467788999**************************999999999999*****99885...4 PP

                 EEEEEE--HHHHHHH CS
  APS_kinase 103 ievfvdtplevceer 117
                   v+++ ++++ e+r
  EHT99002.1 106 RFVYLKGDFDTIESR 120
                 457777777777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     4e-07   0.00048      21      66 ..       4      47 ..       1     174 [. 0.71

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4e-07
      AAA_16 21 sgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa 66
                +++p ++ +l G sG+GKs +++++ ++l+++   fl g++ + +++
  EHT99002.1  4 QSTPhHVFILMGVSGSGKSVVANRVSHQLNTA---FLDGDFLHPRAN 47
                455667889*********************99...777777766222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.2e-06    0.0063       7      34 ..      10      36 ..       5     106 .. 0.79
   2 ?   -2.6   0.0       5.1     6e+03      92     102 ..     149     159 ..     114     176 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.2e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeak 34
                + +++G sG+GK+++++r+ +ql+ + +
  EHT99002.1 10 VFILMGVSGSGKSVVANRVSHQLNTA-F 36
                5789******************9643.3 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
      AAA_22  92 ielliiDEaqh 102
                 + +l +D  + 
  EHT99002.1 149 TDVLAVDITHS 159
                 23444444443 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.046        55       4      26 ..      14      36 ..      11      54 .. 0.86
   2 !   11.1   0.0   0.00023      0.27      96     146 ..      77     127 ..      61     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.046
                EESTTSSHHHHHHHHHCCSTCEE CS
         dNK  4 eGnIgaGKstlvklLskklgvkv 26
                 G  g+GKs ++++ s++l++ +
  EHT99002.1 14 MGVSGSGKSVVANRVSHQLNTAF 36
                5788**************98765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00023
                 HHTTSS-HHHHHHHHHHHHHHHHHCCH-SEEEEEE--HHHHHHHHHHCTTC CS
         dNK  96 aekgtlseeelkiykelldnlleelakpdlliYLkasletclerikkRgre 146
                  + + +s      +k+ +  +l++ +    ++YLk + +t++ r+k R+ +
  EHT99002.1  77 QRTQAISIIVCSALKKHYRDMLRQGNDNLRFVYLKGDFDTIESRLKARKGH 127
                 555666666677788888888888887888****************99755 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.8e-05     0.021       5      53 ..      15      63 ..      12      87 .. 0.68
   2 ?   -3.1   0.2       4.5   5.4e+03     187     209 ..     150     171 ..     145     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                    -STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HHHH CS
  Cytidylate_kin  5 GPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldeaal 53
                    G +gsGKs va +++++l+ ++ld   l        + +  +l d + l
      EHT99002.1 15 GVSGSGKSVVANRVSHQLNTAFLDGDFLHPRANILKMAEGHPLDDNDRL 63
                    789*********************9888755555444555444444443 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.5
                     T-EEEETTTS-HHHHHHHHHHHH CS
  Cytidylate_kin 187 daliidtskltieevvekileli 209
                     d+l +d +  +++evv+  +++i
      EHT99002.1 150 DVLAVDIT-HSLDEVVAATVATI 171
                     77777765.47888888777666 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   8.7e-06      0.01       2      26 ..       9      37 ..       8     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.7e-06
     DUF2075  2 avvlVtGvaGtGKtvvllnllael....e 26
                +v++  Gv+G+GK+vv++++ ++l     
  EHT99002.1  9 HVFILMGVSGSGKSVVANRVSHQLntafL 37
                799*****************999944440 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002      0.23      32      59 ..       7      34 ..       1      41 [. 0.84
   2 ?    0.9   0.0      0.24   2.8e+02      80      98 ..     115     133 ..     113     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkldk 59
                 ++ ++l+G +G+GK+v+++++ ++l++
  EHT99002.1  7 PHHVFILMGVSGSGKSVVANRVSHQLNT 34
                5677899***************999984 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.24
       AAA_7  80 diiesklekrrkgvygPpg 98 
                 d+ies+l+ r+++ + P++
  EHT99002.1 115 DTIESRLKARKGHFFKPQM 133
                 68*************9986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.045      22      46 ..       8      32 ..       3      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsll 46
                  +H ++l+G +GsGK+++a+r++  l
    EHT99002.1  8 HHVFILMGVSGSGKSVVANRVSHQL 32
                  58889***************98655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.1e-05     0.097       2      26 ..      11      35 ..      10      38 .. 0.91
   2 ?   -1.5   0.0       1.9   2.3e+03      51      64 ..     126     139 ..      88     173 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.1e-05
                EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnre 26
                ++L G +G+gKs +a r+++ ln+ 
  EHT99002.1 11 FILMGVSGSGKSVVANRVSHQLNTA 35
                69******************99875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                 ......-------- CS
       AAA_5  51 ttslvdsplvraar 64 
                 +  ++++ lv+++ 
  EHT99002.1 126 GHFFKPQMLVTQFA 139
                 34455555555544 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.7e-05      0.08       1      35 [.      14      47 ..      14     127 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.7e-05
                EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaGdllreeak 35
                +G+ GsGK+ +++++ ++++  +l  Gd l   a+
  EHT99002.1 14 MGVSGSGKSVVANRVSHQLNTAFLD-GDFLHPRAN 47
                59*********************99.999965544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.17      99     124 ..       8      33 ..       2      41 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                  TSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpele 124
                  +++ +l+G SG GKS + n++  +l+
   EHT99002.1   8 HHVFILMGVSGSGKSVVANRVSHQLN 33 
                  5899***************9988765 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.092   1.1e+02      18      42 ..       9      33 ..       2      40 .. 0.79
   2 ?    8.0   0.0    0.0016       1.9      82     165 ..      59     141 ..      50     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.092
  Ploopntkinase1 18 elyyvkgsngsgkstvpsylaekdp 42
                    +++ + g  gsgks v   ++ +  
      EHT99002.1  9 HVFILMGVSGSGKSVVANRVSHQLN 33
                    67889999*******9988877655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
  Ploopntkinase1  82 dteelklalslsereeyikydvlfegiipatllstwieklnrparrlvvlfldtpletclsrvdsrnggedfnedlvvekfkrv 165
                     d ++l    +l +    ++ +  +  i+ ++l + + + l + + +l  ++l  + +t  sr+++r g + f+ +++v +f  +
      EHT99002.1  59 DNDRLPWLQALNDAAFAMQRTQAISIIVCSALKKHYRDMLRQGNDNLRFVYLKGDFDTIESRLKARKG-HFFKPQMLVTQFATL 141
                     5555555556666666666666777789999999999*****************************97.568888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1279.71
//
Query:       EHT99003.1  [L=331]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-29  103.8   0.0    1.4e-29  103.4   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    9.7e-26   91.1   0.2    1.1e-24   87.6   0.2    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    2.9e-15   55.8   0.0    9.9e-15   54.1   0.0    1.9  2  LacI          Bacterial regulatory proteins, lacI family
    1.6e-09   37.7   0.0    2.4e-09   37.2   0.0    1.3  1  Peripla_BP_4  Periplasmic binding protein domain
    0.00045   20.2   0.0      0.001   19.0   0.0    1.5  1  HTH_3         Helix-turn-helix
      0.002   17.9   0.0      0.006   16.4   0.0    1.8  1  HTH_10        HTH DNA binding domain
  ------ inclusion threshold ------
      0.045   13.3   0.0       0.11   12.0   0.0    1.6  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.049   13.4   0.1       0.17   11.7   0.0    2.0  2  HTH_23        Homeodomain-like domain
        0.1   13.1   0.0       0.27   11.7   0.0    1.8  2  HTH_26        Cro/C1-type HTH DNA-binding domain
       0.17   11.5   0.0        2.1    8.0   0.0    2.3  2  HTH_CodY      CodY helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   7.9e-33   1.4e-29       2     260 ..      64     310 ..      63     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 7.9e-33
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPc 97 
                    ++g++lp+l++  f+d++ gi+    e g+++l+ + g++++ + +++++l+ + idg+i++ ++     ++  + +gipvi++ d  + p  +++
    EHT99003.1  64 RAIGVLLPSLTNQVFADVLRGIEAVTDEAGYQTLVAHFGYNPEKEeRQLRSLLGWNIDGVILTERTHTAGTLRMLEVAGIPVIEMMDS-VTP-CLDM 158
                   589*****************************************99*****************999999999999999*********9.888.7887 PP

                   EE.E-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHH CS
  Peripla_BP_1  98 vi.pddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaal 193
                   ++ +d+ +a+ + t   +++gh+   + l++   + t ++ + G++ a++eaGl      + +  ++  ++ e+l e  ++ P+ d + + nd  a+
    EHT99003.1 159 AVgFDNVEAARQMTLAILKKGHRH-TVYLGARLDERTLQKQR-GYESAMREAGL-TPRSVMMEEASSFSAGGELLREAQRRYPQTDSLFCTNDDLAV 252
                   6549********************.59999999999999999.***********.5555566667788999999*********************** PP

                   HHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH- CS
  Peripla_BP_1 194 GavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkin 260
                   Ga++  + +G l+ +++      +  ++ g      + +  + la+  +pr+++Gr+++  +l  i 
    EHT99003.1 253 GAMFECQRQG-LQVPSQM-----AIAGFHGH---DISQVVTPALATVLTPRDQIGRESAALLLARIA 310
                   **********.8888888.....66666666...889999**********************99992 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.28     5e+02      24     100 ..      76     145 ..      57     146 .. 0.72
   2 !   87.6   0.2   6.1e-28   1.1e-24       5     165 ..     176     330 ..     172     331 .] 0.92

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.28
                   HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT--T CS
  Peripla_BP_3  24 sasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalreaglrv 100
                   +   +++rg + +  e+g++  +  +  +++ ++  +r+ l     +     ++vi +   + +g l+ l+ ag+ v
    EHT99003.1  76 QVFADVLRGIEAVTDEAGYQTLVAHFGYNPEKEERQLRSLLG----WNI---DGVILTERTHTAGTLRMLEVAGIPV 145
                   555567777777788888888888888887777777776551....322...8999999999999999999999865 PP

  == domain 2  score: 87.6 bits;  conditional E-value: 6.1e-28
                   HHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHCCTT-- CS
  Peripla_BP_3   5 velGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalreaglr 99 
                   +++Ghr+ +++g   +r ++   + +rg+++a++e+gl+++ ++  ++ +++a++   ++     + +++P+   +++++D lA+g++  ++++gl+
    EHT99003.1 176 LKKGHRHTVYLG---ARLDERTLQKQRGYESAMREAGLTPRSVMMEEASSFSAGGELLRE-----AQRRYPQtdSLFCTNDDLAVGAMFECQRQGLQ 264
                   799*********...888888888999******************999999999888877.....333378445*********************** PP

                   TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3 100 vPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   vP + ++ gf + +++++++P+l tv +p +++Gr+ a lll++++ge+++ ++  +   +ve++S
    EHT99003.1 265 VPSQMAIAGFHGHDISQVVTPALATVLTPRDQIGRESAALLLARIAGENRASQPLDMGFAIVEGGS 330
                   *************************************************99999999999999999 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   5.5e-18   9.9e-15       2      46 .]       8      52 ..       7      52 .. 0.98
   2 ?   -2.2   0.0       2.1   3.8e+03      34      44 ..      85      95 ..      77      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 5.5e-18
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ++DVA++ G +k+TVSr+L+n+e+Vs ++ e+++ a++el+YiPn
  EHT99003.1  8 LQDVADRIGITKMTVSRYLRNPEQVSVALGEKIAVALDELGYIPN 52
                89******************************************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
                HHHHHHHTTB- CS
        LacI 34 VeaameelnYi 44
                +ea+ +e +Y+
  EHT99003.1 85 IEAVTDEAGYQ 95
                78999999998 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.3e-12   2.4e-09       1     221 [.      66     279 ..      66     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.3e-12
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEE.ESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVva.fdsddapsger 96 
                   igv++++ +n+ f  +  g+e+  +e+g+++ v +  + + +++  q+ +++  + dg+i++  + t  a +l  ++ aGIpV+  +ds    +   
    EHT99003.1  66 IGVLLPSLTNQVFADVLRGIEAVTDEAGYQTLV-AHFGYNPEKEERQLRSLLGWNIDGVILT--ERTHTAGTLRMLEVAGIPVIEmMDSV---TPCL 156
                   89*********8888**************9999.79************************99..77778889************835555...**** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSC CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaand 192
                   +  vgfdn +a++++  ++++k   +    v+l G+  d  + +   g +++++e  g++  ++  +   + + + + l +  +++p  d  +++nd
    EHT99003.1 157 DMAVGFDNVEAARQMTLAILKKGHRH---TVYL-GARLDERTLQKQRGYESAMRE-AGLTPRSVMMEEASSFSAGGELLREAQRRYPqTDSLFCTND 248
                   **********************9966...4445.777777777788888888888.455544432222444455555555554466469******** PP

                   CHHHCHHHHHHHTTT..TSTEEEEEES-HHH CS
  Peripla_BP_4 193 gmaegalealeaagl..agkvvvtgqDatpe 221
                   + a ga+   + +gl    +++++g+ + + 
    EHT99003.1 249 DLAVGAMFECQRQGLqvPSQMAIAGFHGHDI 279
                   ******9999999995333333666655544 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.8e-07     0.001      13      49 ..       9      45 ..       6      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.8e-07
                HHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHT CS
       HTH_3 13 eeLAeklGvsrstisriEnGernPsletlkklakaLg 49
                +++A+++G+++ t+sr+ ++  + s+   +k+a aL+
  EHT99003.1  9 QDVADRIGITKMTVSRYLRNPEQVSVALGEKIAVALD 45
                69******************888**********9997 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.3e-06     0.006      22      48 ..       4      30 ..       2      32 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.3e-06
      HTH_10 22 RrvtlkeLAkelGIskstlsehLrkae 48
                +r  l+++A+++GI+k+t+s +Lr+ e
  EHT99003.1  4 KRPVLQDVADRIGITKMTVSRYLRNPE 30
                566699******************966 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.3e-05      0.11      21      40 ..       9      28 ..       7      28 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
      HTH_24 21 reLAerlglSpstvnrrlkr 40
                +++A+r+g+++ tv+r+l++
  EHT99003.1  9 QDVADRIGITKMTVSRYLRN 28
                699***************95 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.4e-05      0.17      21      40 ..       9      28 ..       8      33 .. 0.91
   2 ?   -3.7   0.1       6.4   1.2e+04      30      35 ..     180     185 ..     179     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.4e-05
      HTH_23 21 reIAreLgvsrrTvyrwlkr 40
                +++A++ g++++Tv+r+l+ 
  EHT99003.1  9 QDVADRIGITKMTVSRYLRN 28
                689**************986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.4
      HTH_23  30 srrTvy 35 
                 +r+Tvy
  EHT99003.1 180 HRHTVY 185
                 79***9 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.27      10      51 ..       5      45 ..       1      46 [. 0.87
   2 ?   -2.9   0.0       5.5   9.8e+03       7      18 ..     167     178 ..     164     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
      HTH_26 10 gitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLg 51
                +   +++a ++gi++ t+sr++ + pe+vs    +ki+ aL+
  EHT99003.1  5 RPVLQDVADRIGITKMTVSRYLRN-PEQVSVALGEKIAVALD 45
                5557899*****************.7****999999999997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
      HTH_26   7 adrgitkseLar 18 
                 a+r++t + L +
  EHT99003.1 167 AARQMTLAILKK 178
                 567777766655 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0012       2.1       9      29 ..      10      30 ..       4      37 .. 0.83
   2 ?    0.5   0.0      0.25   4.6e+02      23      33 ..     133     143 ..     120     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
    HTH_CodY  9 kiaDriGitrsvivnaLrkLe 29
                 +aDriGit+  +   Lr  e
  EHT99003.1 10 DVADRIGITKMTVSRYLRNPE 30
                69********99999888766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
    HTH_CodY  23 naLrkLesaGi 33 
                   Lr Le aGi
  EHT99003.1 133 GTLRMLEVAGI 143
                 579*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2375.21
//
Query:       EHT99004.1  [L=231]
Description: pirin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-37  125.6   0.5    1.3e-36  124.9   0.5    1.3  1  Pirin         Pirin
    1.4e-24   86.1   0.1    4.8e-24   84.3   0.1    1.8  2  Pirin_C_2     Quercetinase C-terminal cupin domain
    4.1e-09   36.0   0.2    2.6e-08   33.5   0.2    2.1  2  Cupin_2       Cupin domain
     0.0017   18.7   0.0       0.64   10.4   0.0    2.2  2  Pirin_C       Pirin C-terminal cupin domain
  ------ inclusion threshold ------
      0.085   13.4   0.0       0.23   12.0   0.0    1.8  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.5   3.5e-40   1.3e-36       5     108 .]       7     119 ..       3     119 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 3.5e-40
                 CCGTCC...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE CS
       Pirin   5 rralgk..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmn 94 
                 ++++g+  + +l+s+++F+f++++d++ + +++     edvi  g+gf++hph+++e++ty+l+G+veh+Ds+Gnk++i +G++q+m+Ag+G+ hsE+n
  EHT99004.1   7 AEERGHanHGWLDSWHTFSFANYYDANFMGFSAlrvinEDVIdpGQGFGTHPHKDMEILTYVLSGTVEHQDSMGNKEQIPAGEFQIMSAGTGVRHSEYN 105
                 4555556689*********************99****99999********************************************************* PP

                 -SSSS-EEEEEEEE CS
       Pirin  95 eeeeesleglqlWv 108
                  +++e+l+++q+W+
  EHT99004.1 106 ASKTEPLHLYQIWI 119
                 *************8 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.53   1.9e+03      44      55 ..      67      91 ..      47     110 .. 0.62
   2 !   84.3   0.1   1.3e-27   4.8e-24       2      86 .]     144     228 ..     143     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.53
   Pirin_C_2 44 qvieGevevng.............e 55
                 v++G+ve ++             +
  EHT99004.1 67 YVLSGTVEHQDsmgnkeqipagefQ 91
                5778888887744444444444444 PP

  == domain 2  score: 84.3 bits;  conditional E-value: 1.3e-27
   Pirin_C_2   2 vaSpdgrdgslkinQdarlyaakldegesleyelaagrkaYlqvieGevevngeslaagDGlaiedesslsltaeedaevLlfDl 86 
                 ++ pd+rdgslk+ Qd+ l++  + +ges +++++agr++++qv++G v+vng+s ++ D++a++de+ l+l+a+++aevLlfDl
  EHT99004.1 144 ILTPDARDGSLKVWQDMTLSRWVFAAGESDSVTIEAGRRIWIQVVKGDVKVNGQSASNSDAFAVWDETGLTLEADSAAEVLLFDL 228
                 789*********************************************************************************8 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.2   7.2e-12   2.6e-08       4      70 ..      47     117 ..      45     120 .. 0.91
   2 ?   -0.4   0.0      0.26   9.5e+02       4      30 ..     166     192 ..     151     198 .. 0.60

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 7.2e-12
                 EEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT..-EEEEEE-SSS.-EEEEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag..tpHrfrNtgde.parllvv 70 
                 +++pG+ ++ h H++ + + yVl+G++e +   g++ ++ aG++ +  ag  ++H   N++++ p++l+ +
  EHT99004.1  47 VIDPGQGFGTHPHKDMEILTYVLSGTVEHQdSMGNKEQIPAGEFQIMSAGtgVRHSEYNASKTePLHLYQI 117
                 589***************************888****************87899*****999999999543 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.26
                 EEETTEEEEEECSSSEEEEEEEEESEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGeg 30 
                 +++ Ges    +  g   ++ V++G +
  EHT99004.1 166 VFAAGESDSVTIEAGRRIWIQVVKGDV 192
                 444555555555555555555666655 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0038        14       8      55 ..      50     100 ..      47     113 .. 0.78
   2 !   10.4   0.0   0.00018      0.64       8      68 ..     169     226 ..     163     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0038
                 TT-EEEEE--TT-EEEEEEEES-EEESSTT...EEE-TTEEEEE-SSSEEE CS
     Pirin_C   8 agaelelplpegleaavyvleGelevgger...seieeeqlavlgdgdslv 55 
                 +g+ +     +++e + yvl+G++e +++    ++i+++++ ++++g+ + 
  EHT99004.1  50 PGQGFGTHPHKDMEILTYVLSGTVEHQDSMgnkEQIPAGEFQIMSAGTGVR 100
                 6666666668999***********877766666899999999999887765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00018
                 TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-SSSEEEEE--SS-EEEEEE CS
     Pirin_C   8 agaelelplpegleaavyvleGelevggerseieeeqlavlgdgdslvvkaeekgarvlLl 68 
                 ag++ +++++ g +  + v++G+++v+g+  + + + +av  d++ l+++a+ ++a+vlL+
  EHT99004.1 169 AGESDSVTIEAGRRIWIQVVKGDVKVNGQS-ASNSDAFAVW-DETGLTLEAD-SAAEVLLF 226
                 6667777888999999*************6.5555555544.7788999998.89999997 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.5e-05      0.23       8      39 ..      28      73 ..      21     110 .. 0.70
   2 ?   -2.3   0.0       1.8   6.3e+03      38      66 ..     149     181 ..     139     193 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.5e-05
                  EEE-S-..............--------EEEEEESSSEEEEEEE-T CS
  2OG-FeII_Oxy  8 nyypph..............pdpevilglgahtdaslltillqddv 39
                  nyy+                +dp + +g+++h+d ++lt+ l+ +v
    EHT99004.1 28 NYYDANfmgfsalrvinedvIDPGQGFGTHPHKDMEILTYVLSGTV 73
                  555444444445555555559999999*************777663 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                   -.TT---EEEE...TEEEE----TTEEEEEE-H CS
  2OG-FeII_Oxy  38 d.vgglevfkd...gkwlrvppvdnslivniGd 66 
                      g l+v +d   ++w++   + +s+++++G 
    EHT99004.1 149 ArDGSLKVWQDmtlSRWVFAAGESDSVTIEAGR 181
                   455566664444445577777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1739.26
//
Query:       EHT99005.1  [L=164]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-17   61.7   0.0    8.8e-17   61.4   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.2e-12   46.5   0.0    4.2e-12   46.1   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.2e-11   44.0   0.0    3.1e-11   43.6   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    4.1e-10   40.5   0.0    5.4e-10   40.1   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    4.2e-09   36.7   0.0    5.1e-09   36.4   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    5.5e-06   26.1   0.1    1.9e-05   24.4   0.1    1.8  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
    1.8e-05   24.9   0.1    2.3e-05   24.5   0.1    1.2  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
    0.00015   21.7   0.0    0.00024   21.0   0.0    1.4  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.057   13.6   0.0       0.12   12.5   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.4e-20   8.8e-17      14     117 .]      33     137 ..      16     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4.4e-20
                     HHHHHHHHHH.HHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTE CS
  Acetyltransf_1  14 ppnedaseee.feesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedn 105
                      p++++s++e     +s  a+ + lva+ d++++G ++l  ++  ++++++ +++ V+p+++++G+G+aL+ a+++ + ++ ++++i+l+v++dn
      EHT99005.1  33 LPYPSPSLWEqK-L-ASPRAGvHMLVACIDEQVVGQLTLEGVTTARRRHCASIGMGVDPAFHRRGVGKALMAAMVDLCDNWlQVTRIELTVFADN 125
                     466677777732.2.23355579999******************888889999****************************************** PP

                     HHHHHHHHH.TTE CS
  Acetyltransf_1 106 daairlYek.lGF 117
                     ++ai+lY + +GF
      EHT99005.1 126 HKAIALY-QpFGF 137
                     *******.66**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.1e-15   4.2e-12      18     111 ..      37     142 ..      21     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2.1e-15
  Acetyltransf_10  18 spealrerie..egealllvaeeggkivGviel.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavp 99 
                      sp  ++++++     +++lva  ++++vG ++l   +           + Vdp+++++G+gkaL+ a+ + ++++ + +  eltv a++ +a++
       EHT99005.1  37 SPSLWEQKLAspRAGVHMLVACIDEQVVGQLTLeGVTTarrrhcASIGMGVDPAFHRRGVGKALMAAMVDLCDNWLQVTriELTVFADNhKAIA 130
                      55666677743566678888888889996664432222334423555669*************************88889************** PP

  Acetyltransf_10 100 fYeklGFkavge 111
                      +Y+ +GF+  g 
       EHT99005.1 131 LYQPFGFRIEGT 142
                      *******97765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.5e-14   3.1e-11       4      75 ..      53     138 ..      50     139 .. 0.71

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.5e-14
                     EEEEEEETTEEEEEEEEEEES......TCTEE...EEE-GGGTTSSHHHHHHHH........TTSEEE...EEEEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld......aeitr...laVdpeyrgkGiGraLlea........aekgii...leqlel..naekaikfYeklGFe 75 
                     +++Va  d+++vG++ l+ +       +       + Vdp+++++G+G+aL++a             +   +e l++  +++kai++Y+ +GF+
      EHT99005.1  53 HMLVACIDEQVVGQLTLEGVTtarrrhC---AsigMGVDPAFHRRGVGKALMAAmvdlcdnwL----QvtrIE-LTVfaDNHKAIALYQPFGFR 138
                     899**********988888878765433...1566*****************98555443221....122223.23343445***********8 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.7e-13   5.4e-10       2     138 .]       4     138 ..       3     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.7e-13
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry...lpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedee..aelgymlapsf 91 
                     +++r++ ++D++al +l+s+pe++ +   lp  ++++  e++l+      s++ g+  ++   d++v+G   l  +   +++  a +g+ ++p+f
      EHT99005.1   4 VMIRHAVPADAPALTRLYSQPETQAAtlhLPY-PSPSLWEQKLA------SPRAGVHMLVACIDEQVVGQLTLEGVTTARRRhcASIGMGVDPAF 91 
                     5799******************9975333332.23333333333......23467776665566658*******9999988899*********** PP

  Acetyltransf_3  92 wgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +++G+++  ++a+++++ + l+++r++ ++ ++N++ i++++  Gf+
      EHT99005.1  92 HRRGVGKALMAAMVDLCDNWLQVTRIELTVFADNHKAIALYQPFGFR 138
                     ******************************************99996 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.6e-12   5.1e-09       1     152 [.       6     155 ..       6     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.6e-12
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkegl 94 
                     ir a ++Da ++ ++y+++ + +a t     +s    e+ l++  +++ +  lva  ++++vG+++l+++    +++ a + + ++  +   +g+
      EHT99005.1   6 IRHAVPADAPALTRLYSQP-ETQAATLHLPYPSPSLWEQKLASPRAGVHM--LVACiDEQVVGQLTLEGVTTARRRHCASIGMGVD-PAFHRRGV 96 
                     899999**********974.556777777778888888888885233333..344459*************977777788899995.899***** PP

  Acetyltransf_4  95 grelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                     g++l++a+++       +++++  ++++n ++i++++ +GF+++g  ++++   g   D
      EHT99005.1  97 GKALMAAMVDLCdNWLQVTRIELTVFADNHKAIALYQPFGFRIEGTAQGYAIREGNMTD 155
                     ************999********************************999888887766 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.49   9.7e+02      80      92 ..      50      64 ..      39      82 .. 0.67
   2 !   24.4   0.1   9.4e-09   1.9e-05      88     142 ..      88     142 ..      52     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.49
                    EEEEEEES..SHHHC CS
  Acetyltransf_8 80 rGiHllig..eaear 92
                     G+H+l++  +++ +
      EHT99005.1 50 AGVHMLVAciDEQVV 64
                    588888874433333 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 9.4e-09
                     SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  88 eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     +++++++g+++al+ a+v+++ +  +++r+ +   ++N++ai+l++  Gf+ e++
      EHT99005.1  88 DPAFHRRGVGKALMAAMVDLCDNWLQVTRIELTVFADNHKAIALYQPFGFRIEGT 142
                     78999**********************************************9987 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.2e-08   2.3e-05      26     125 ..       9     110 ..       3     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-08
  Acetyltransf_6  26 tdpedleallelfraqwarrpdvfadpltraflrdllaalaargalrlyvlrldgrpvAva....lglrsgdrlyywlggydpelaklspgllll 116
                     + p+d+ al +l+++  ++   +  ++ + +++++ la++  r  ++++v+  d+++v+ +    ++   ++++    +g+dp++++ ++g+ l+
      EHT99005.1   9 AVPADAPALTRLYSQPETQAATLHLPYPSPSLWEQKLASP--RAGVHMLVACIDEQVVGQLtlegVTTARRRHCASIGMGVDPAFHRRGVGKALM 101
                     5689999999999875555535666788889********9..999**************9977666666666777788888************** PP

  Acetyltransf_6 117 weliedaae 125
                     + +++ +  
      EHT99005.1 102 AAMVDLCDN 110
                     **9986654 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.2e-07   0.00024      26      79 ..      84     139 ..      63     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
                 EEEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfek 79 
                 ++ v+p + rrG g+ l +a+     +  +   + l v a+N+++i+ly+  Gf+ 
  EHT99005.1  84 GMGVDPAFHRRGVGKALMAAMVDLCDNwlQVTRIELTVFADNHKAIALYQPFGFRI 139
                 4789********************999966677889999***************96 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     6e-05      0.12      30      51 ..      85     106 ..      55     110 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaald 51 
                        V++++ ++G++k+L+ a++d
       EHT99005.1  85 MGVDPAFHRRGVGKALMAAMVD 106
                      57*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1311.64
//
Query:       EHT99006.1  [L=95]
Description: hypothetical protein CKS_0912 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-18   67.2  30.5    1.6e-18   67.1  30.5    1.0  1  DUF2756      Protein of unknown function (DUF2756)
  ------ inclusion threshold ------
      0.064   12.5   0.8       0.17   11.2   0.0    1.8  2  MSP1a        Major surface protein 1a (MSP1a)
      0.082   12.5   2.3      0.089   12.3   2.3    1.0  1  MCD          Malonyl-CoA decarboxylase C-terminal domain
       0.14   12.8   6.4       0.21   12.2   6.4    1.4  1  U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N
       0.22   11.4   3.7       0.24   11.3   3.7    1.1  1  DUF1980      Domain of unknown function (DUF1980)
        0.3   10.0   2.7       0.35    9.8   2.7    1.0  1  CSG2         Ceramide synthase regulator
        0.6    8.8   7.7       0.62    8.8   7.7    1.1  1  Presenilin   Presenilin
        1.8    7.4   5.0        1.8    7.4   5.0    1.0  1  LMBR1        LMBR1-like membrane protein
        1.9    8.3   4.0          2    8.2   4.0    1.2  1  FliP         FliP family
          2    7.7   9.4        2.1    7.6   9.4    1.1  1  DUF4407      Domain of unknown function (DUF4407)
        2.4    7.7   4.2        4.7    6.8   4.2    1.5  1  PepSY_TM     PepSY-associated TM region


Domain annotation for each model (and alignments):
>> DUF2756  Protein of unknown function (DUF2756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1  30.5     1e-21   1.6e-18       1      94 [.       1      94 [.       1      95 [] 0.93

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1e-21
     DUF2756  1 mkrll.llaallplavlaqpinvlnnpnqpGyvipsqqrlqtqmqtqqlqqkgmlkqqlktqtrlqqqklqnqlnnnsqrvqqgqpGelnarqqv 94
                mk+ l ++aallpl+++a+ +n +n+ n+pGy +psqqr+qtqm  q +qq++ l+q+ + q +  q+klq+q ++ +qrv ++qpG+++++q++
  EHT99006.1  1 MKKWLmVFAALLPLTGMANMLNSTNDLNKPGY-NPSQQRMQTQMLNQSQQQQTKLQQDQQRQNQDVQRKLQEQRDSAQQRVIKSQPGQQQNQQNM 94
                6665516799**********************.6******************************************************9887765 PP

>> MSP1a  Major surface protein 1a (MSP1a)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.17      60     112 ..       7      62 ..       3      70 .. 0.83
   2 ?    0.2   0.2      0.24   3.8e+02     165     184 ..      72      91 ..      65      95 .] 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
       MSP1a  60 alvvLLpLlgaaaviavadesed.kaagdaarvvke..essrelsrelseDrsklk 112
                  + +LLpL g+a ++  +++ ++ +   +++r+  +  ++s++++ +l++D+++ +
  EHT99006.1   7 VFAALLPLTGMANMLNSTNDLNKpGYNPSQQRMQTQmlNQSQQQQTKLQQDQQRQN 62 
                 6889***********99999887256779999998855689999999*****9976 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
       MSP1a 165 trdessaltvsavPasdqqp 184
                  rd +++++++  P+ +q++
  EHT99006.1  72 QRDSAQQRVIKSQPGQQQNQ 91 
                 56777777777777766654 PP

>> MCD  Malonyl-CoA decarboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.3   5.5e-05     0.089     128     198 ..       5      73 ..       2      94 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
                 --EEEEEE--TTSHHHHHHHCCGCC-TT--HHHHCCHGGC............TSSTCTSSCHHHHHHHHHH CS
         MCD 128 lktfatLsPiPgfrkwlkrelkkesealleeeeaealaeleaeaakllkklleeeewaedeelaeklkevl 198
                 l  fa+L P+ g++++l+++++ ++     ++++ +++ l  +++++++++l++++  +++++++kl+e  
  EHT99006.1   5 LMVFAALLPLTGMANMLNSTNDLNKPGYNPSQQRMQTQML--NQSQQQQTKLQQDQQRQNQDVQRKLQEQR 73 
                 678***************8854333333333333333333..44444444444444555555555555543 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.4   0.00013      0.21      35      87 ..      13      71 ..       9      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
  U1snRNP70_N 35 kitGvaaflselke......deeeqeppektetkeekkererkekkekkeekleealee 87
                 ++tG+a++l++ ++      ++ +q  +++  ++ ++++ + ++ ++++++ ++++l+e
   EHT99006.1 13 PLTGMANMLNSTNDlnkpgyNPSQQRMQTQMLNQSQQQQTKLQQDQQRQNQDVQRKLQE 71
                 79*******88877888888667777888899999999999999999999999999987 PP

>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.7   0.00015      0.24      77     155 ..       5      80 ..       1      94 [. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
     DUF1980  77 ilviPlllglllptkvldssiakak.Gfnfslakeskseqkedegtqeqslkpdtssyvtkdgydkemkkeakklskkkk 155
                 ++v++ ll l+  + +l+s+   +k G+n s++   ++++ +++++q+++l++d ++  ++d ++k +++  ++ +++++
  EHT99006.1   5 LMVFAALLPLTGMANMLNSTNDLNKpGYNPSQQR-MQTQMLNQSQQQQTKLQQD-QQRQNQDVQRKLQEQR-DS-AQQRV 80 
                 6789999999999999***999999999888887.3455555555555555544.4455555544444442.22.23333 PP

>> CSG2  Ceramide synthase regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.7   0.00021      0.35      59     131 ..       6      79 ..       3      92 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
        CSG2  59 iyfaswllllPiarllkeatkssvsekesskenklesnsessleleekvesdeeleekteeeklekvae.kekk 131
                 + fa++l l+ +a++l++++  +   ++ s+++++++  ++s+++++k ++d++ ++++ ++kl+++++  +++
  EHT99006.1   6 MVFAALLPLTGMANMLNSTNDLNKPGYNPSQQRMQTQMLNQSQQQQTKLQQDQQRQNQDVQRKLQEQRDsAQQR 79 
                 77899999999999999988877776666655555555555555555555555555555555555554432333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.7   0.00038      0.62     233     292 ..      33      91 ..       4      95 .] 0.30

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00038
  Presenilin 233 aeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeessee 292
                 ++s+++ +++  ++++++++k ++++++ +++  q++ +e++++++++  +s++ +++++
  EHT99006.1  33 NPSQQRMQTQMLNQSQQQQTKLQQDQQR-QNQDVQRKLQEQRDSAQQRVIKSQPGQQQNQ 91 
                 2222222222222222222222221111.1111112122222222222222222222222 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.0    0.0011       1.8     264     327 ..      29      90 ..       4      95 .] 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
       LMBR1 264 s......nenkteeslaklekqlikalqkrertekqwkrllekalelediiknksskekefksses.srrg 327
                 +      ++  +++ l+++++q+ k  q+++r+++  +r l+++         ++s+++++ +s++ ++++
  EHT99006.1  29 KpgynpsQQRMQTQMLNQSQQQQTKLQQDQQRQNQDVQRKLQEQ---------RDSAQQRVIKSQPgQQQN 90 
                 25555544455888999999999999999999999999999999.........888888888887764444 PP

>> FliP  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.0    0.0012         2      56     113 ..      33      90 ..       5      95 .] 0.60

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SS CS
        FliP  56 aPvleeineeavkplleeeiteeealekakeplrefllkqtrekdlalflelaekeee 113
                 +P  ++++++++++ ++++++ ++  +++++++++ l++q ++ + +++ +   ++++
  EHT99006.1  33 NPSQQRMQTQMLNQSQQQQTKLQQDQQRQNQDVQRKLQEQRDSAQQRVIKSQPGQQQN 90 
                 3555556666666666666666666666666666666666665555555554443333 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.4    0.0013       2.1     177     236 ..      28      90 ..      12      95 .] 0.62

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
     DUF4407 177 gvaGkgpaake.kkaqldaaqaelaelkakld..atarlaalraelaeleaerakeraasqaa 236
                 +++G+ p+ ++  +++l++ q++ ++l+++ +  +++ + +l++++++++++ +k++  +q+ 
  EHT99006.1  28 NKPGYNPSQQRmQTQMLNQSQQQQTKLQQDQQrqNQDVQRKLQEQRDSAQQRVIKSQPGQQQN 90 
                 467777776663445566666666666666555566666666666666666666666655554 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.2    0.0029       4.7     177     230 ..       4      73 ..       3      94 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxx.....................x RF
    PepSY_TM 177 wllpfllllalTGlvwslaavlgaavkalvseg..........aaaaaaaaaaaaaaaaaaaa.....................e 230
                 wl++f++ll lTG++  l+++  ++ k  ++++          +++++              +                     +
  EHT99006.1   4 WLMVFAALLPLTGMANMLNSTN-DLNKPGYNPSqqrmqtqmlnQSQQQ--------------QtklqqdqqrqnqdvqrklqeqR 73 
                 7788888888888888555552.3333333222333332222211111..............11111222222222333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4489  (0.250376); expected 358.6 (0.02)
Passed bias filter:                      936  (0.0522059); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 732.08
//
Query:       EHT99007.1  [L=247]
Description: glycerophosphodiester phosphodiesterase, cytosolic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-38  130.9   0.0    8.2e-38  130.6   0.0    1.1  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    4.8e-05   23.7   0.0    0.00012   22.4   0.0    1.7  1  GDPD_2    Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   9.1e-42   8.2e-38       1     258 [.      14     240 ..      14     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 9.1e-42
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HRG ++  pEnTl++++  a+ G+ +iEfD +l+ D ++ +lHD++ldrt d++g     +l +++l +ld ++++ +a+++++++       +l+ev 
  EHT99007.1  14 HRGGGKLAPENTLAAIDVGAKYGHLMIEFDAKLSADAHIFLLHDDTLDRTSDGWG--IAGELPWDKLSQLD-AGSWFSAAFQGEKL------ARLDEVA 103
                 *******************************************************..**************.99***********9......8****** PP

                 HHHHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EECHCCCCCCC CS
        GDPD 100 kkpqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaeadssleraakfaka 198
                 ++++++gl+++i+i+++  + +e+     ++i+++  ++       +++    +ssf++ +l +  +++p+lp  +l++  ++a++      + +++ +
  EHT99007.1 104 ARCRQHGLMANIEIKPTTGTDAETG----RAIAQAAATLW------QGQPLPLLSSFSFVALEAAMQAEPQLPRGLLSHHWDNAWQE-----KTRALDC 187
                 **********************999....77777777776......45556667************************966666666.....9****** PP

                 TCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 199 dallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                  +++ +++ ++e+     +V ++k++ l+++vytvn +  e+ ++ll++gvd+++tD++d
  EHT99007.1 188 TSIHLNHKVLTEA-----RVAELKEADLRILVYTVNSP--ERARTLLKWGVDAICTDSID 240
                 *************.....********************..******************98 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.3e-08   0.00012       5      30 .]     215     240 ..     211     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.3e-08
      GDPD_2   5 WttddeavwrelvgaGVdgInTDdld 30 
                 +t++ +   r+l+++GVd I+TD +d
  EHT99007.1 215 YTVNSPERARTLLKWGVDAICTDSID 240
                 89*********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1778.72
//
Query:       EHT99008.1  [L=357]
Description: ATP-binding component of an ABC superfamily glycerol-3-phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-31  108.6   0.0    5.2e-31  108.0   0.0    1.3  1  ABC_tran         ABC transporter
      4e-11   43.6   0.0    1.5e-10   41.7   0.0    2.1  1  OB_MalK          MalK OB fold domain
    3.9e-10   39.7   0.1    1.2e-09   38.2   0.1    1.9  1  TOBE_2           TOBE domain
    7.9e-07   29.2   0.0      0.013   15.3   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.9e-05   25.1   0.0    3.9e-05   24.1   0.0    1.4  1  AAA_16           AAA ATPase domain
    7.7e-05   22.7   0.0    0.00015   21.8   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00056   19.4   0.1     0.0043   16.5   0.1    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
      0.001   19.6   0.4     0.0055   17.2   0.1    2.4  2  CysA_C_terminal  CysA C-terminal regulatory domain
      0.001   19.2   0.1     0.0022   18.2   0.1    1.8  1  AAA_33           AAA domain
     0.0045   17.3   0.2     0.0098   16.2   0.1    1.8  1  AAA_22           AAA domain
     0.0072   16.0   0.0       0.02   14.7   0.0    1.7  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.018   15.0   0.0    1.2  1  ATPase_2         ATPase domain predominantly from Archaea
      0.022   14.1   0.0      0.041   13.3   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.028   14.9   0.1      0.057   13.9   0.1    1.7  1  AAA              ATPase family associated with various cellul
      0.028   14.3   0.0      0.043   13.7   0.0    1.2  1  Rad17            Rad17 P-loop domain
      0.047   13.2   0.1       0.54    9.7   0.0    2.1  2  PhoH             PhoH-like protein
      0.047   12.9   0.1      0.083   12.1   0.1    1.3  1  NB-ARC           NB-ARC domain
      0.078   12.9   0.7       0.25   11.2   0.0    2.1  2  NACHT            NACHT domain
        0.1   12.3   0.0       0.21   11.3   0.0    1.5  1  AAA_30           AAA domain
       0.11   12.0   0.1       0.37   10.3   0.0    1.8  2  AAA_25           AAA domain
       0.13   12.5   0.0        0.3   11.3   0.0    1.7  2  AAA_28           AAA domain
       0.14   12.7   0.0       0.22   12.0   0.0    1.2  1  AAA_23           AAA domain
       0.14   12.1   0.8       0.39   10.7   0.0    2.1  2  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   6.7e-34   5.2e-31       2     136 ..      21     162 ..      20     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 6.7e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + ++++++ ge +++vG++G+GKStLl+++agl++ t+G+i + +k +++  +e  ++ i++++q+  l p+++v+en             + ++++ +
  EHT99008.1  21 QPLNVTINDGEFMVMVGPSGCGKSTLLRMVAGLERVTSGDIYIADKRVTH--EEPKDRGIAMVFQNYALYPHMSVEENmayglrirgmskeHIRQRVLD 117
                 6789**********************************************..999999****************************9988888888999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 a+++l+l++l +++     ++LSgGq+qrva+ ra++++p ++l+DEp 
  EHT99008.1 118 AARSLELDHLLTRRP----RELSGGQRQRVAMGRAIVREPAVFLFDEPL 162
                 999999999999998....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.9e-13   1.5e-10       1      53 []     236     285 ..     236     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.9e-13
     OB_MalK   1 GSPaMNflpatveedg.vlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 GSPaM ++++  +edg  +v + + ++p+ e++    +++a+++v+lGiRPEh+
  EHT99008.1 236 GSPAMSLIQGNFSEDGaRFVVDASHAIPVGEGK----AKWANRPVVLGIRPEHV 285
                 9****************77777888******99....****************5 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   1.5e-12   1.2e-09       1      76 []     278     348 ..     278     348 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.5e-12
      TOBE_2   1 laiRPEklrlaaagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 l+iRPE+++l+  ++ ++g++ +Ve +e+lG++ + + ++++ +l vvr p+++   ++++G+t+ l+++ ++++++
  EHT99008.1 278 LGIRPEHVQLS--SQqQGGIPFRVETLEMLGADNLAHGRIGEARL-VVRLPHSE---RPEAGSTLLLHLPVEALHFF 348
                 79********4..33256**********************99988.99999999...9****************998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-05     0.013       1      26 [.      32      65 ..      32      81 .. 0.73
   2 !   11.4   0.1   0.00025       0.2     222     287 ..     120     182 ..      93     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl........d 26
                ++v++Gp g+GKS+LL+   +l r+        d
  EHT99008.1 32 FMVMVGPSGCGKSTLLRMVAGLERVtsgdiyiaD 65
                79****************9999776555544444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00025
      AAA_21 222 vflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 + le ++   + +relS G+++  a+  a+ r +   +++l+DEp ++L+ +l       l +l+r
  EHT99008.1 120 RSLELDHLLTRRPRELSGGQRQRVAMGRAIVREP---AVFLFDEPLSNLDARLRVQMRLELQQLHR 182
                 5566677888899**********9********99...*************9887666666655555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     5e-08   3.9e-05      21     146 ..      27     198 ..      16     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5e-08
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd....................ggif.lrgkcdql.....esaipysalaqalareellrqlldeaesae 93 
                  +++e ++ +G+sG+GKs+l+r+++  le+                     g i+ + +++  +     e++++y   ++  ++e++ + +ld+a+s e
  EHT99008.1  27 INDGEFMVMVGPSGCGKSTLLRMVAG-LERVtsgdiyiadkrvtheepkdrG-IAmVFQNYALYphmsvEENMAYGLRIRGMSKEHIRQRVLDAARSLE 123
                 455689999****************4.5544566777777788888888743.33255555555655556669998877777799************** PP

      AAA_16  94 leawrekleeala........................avpelagaeasrllellkrllallsrderplvlvlDdlqw 146
                 l++  ++ +++l+                        + ++l++ ++ +++ +l++l ++l++  + l+++ D+++ 
  EHT99008.1 124 LDHLLTRRPRELSggqrqrvamgraivrepavflfdePLSNLDARLRVQMRLELQQLHRRLQT-TS-LYVTHDQVEA 198
                 **********999****99999999999999999999999999999999999*9999999999.66.9999998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.9e-07   0.00015      86     136 ..      16      67 ..       3      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-------- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevseklgr 136
                  +++ ++ l+  ++d +++v+vG+SG GKStL+ ++++ +++  g++  +++r
   EHT99008.1  16 KNQIIQPLNVTINDgEFMVMVGPSGCGKSTLLRMVAGLERVTSGDIYIADKR 67 
                  4566788888898889******************999888888887666655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.6e-06    0.0043      23     216 ..      29     210 ..       6     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.6e-06
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120
                 + +f ++vGp G+GKs ll  +    G +       ++ +  i   + ++++ k   ++++f+n     +++ ee ++   +   g s+ +i ++    
  EHT99008.1  29 DGEFMVMVGPSGCGKSTLLRMV---AGLER-----VTSGDIYIADkRVTHEEPKDRGIAMVFQNYALYPHMSVEE-NMAYGLRIRGMSKEHIRQRVLDA 118
                 45799*************9766...67433.....3444444544456677777778888888887773333322.33333333444455565555444 PP

                 ...HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEET CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 ...kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkven 216
                     e+ +ll +    + +LSgG+++ va+    Ai  v+  +++l+De  ++LD++ + ++   l++ + + Q     ++++++e +    +v+  ++
  EHT99008.1 119 arsLELDHLLTR---RPRELSGGQRQRVAMGR--AI--VREPAVFLFDEPLSNLDARLRVQMRLELQQLHRRLQTTSLYVTHDQVEAMTLAQRVMVMNK 210
                 001556666655...6899******9877653..34..6777899*************99999999999999999888888888887766666665555 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   7.1e-06    0.0055       9      42 ..     250     286 ..     242     287 .. 0.72
   2 ?   -1.8   0.0       6.2   4.8e+03       1      13 [.     309     321 ..     309     332 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.1e-06
  CysA_C_terminal   9 dG.klri.GglalpvP.elagadgqevvayVRPhDle 42 
                      dG ++++ +++a+pv    a  ++++vv+++RP+++ 
       EHT99008.1 250 DGaRFVVdASHAIPVGeGKAKWANRPVVLGIRPEHVQ 286
                      6645555366888888555555*************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.2
  CysA_C_terminal   1 NlFhGrvedGklr 13 
                      Nl hGr+ + +l+
       EHT99008.1 309 NLAHGRIGEARLV 321
                      6667777655554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.8e-06    0.0022       2      46 ..      33      75 ..      32     205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.8e-06
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllss.dtlrrrlfgtdqqskt 46
                +++vG++G+GKstl++ ++   g ++++s d+++   ++t++++k 
  EHT99008.1 33 MVMVGPSGCGKSTLLRMVA---GLERVTSgDIYIADKRVTHEEPKD 75
                58**************999...888887735555555555444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.3e-05    0.0098       5      28 ..      30      53 ..      27     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleq 28
                  ++v +G+sG+GK+tllr+++  
  EHT99008.1 30 GEFMVMVGPSGCGKSTLLRMVAGL 53
                57899**************99865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05      0.02      17      39 ..      25      47 ..      19      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                ++i+  ++++++GpsG GKSTll
  EHT99008.1 25 VTINDGEFMVMVGPSGCGKSTLL 47
                5566444999************8 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.3e-05     0.018      20      69 ..      30      78 ..      20     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-05
    ATPase_2 20 neiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefi 69
                 e+++  Gp g+GK++Ll+ ++          iy+ + r   ++ +d+ i
  EHT99008.1 30 GEFMVMVGPSGCGKSTLLRMVAGLE-RVTSGDIYIADKRVTHEEPKDRGI 78
                5788999***********9877655.556688999998888887777765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.3e-05     0.041       7      45 ..      15      53 ..      10      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-05
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsl 45
                  G+++  + l++++  g  +++vGp+G+GK+ l + +++l
    EHT99008.1 15 GKNQIIQPLNVTINDGEFMVMVGPSGCGKSTLLRMVAGL 53
                  78888899999999999***************9887765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   7.3e-05     0.057       1      21 [.      33      53 ..      33     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-05
                EEEESSTTSSHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavake 21
                ++++Gp G+GK++l + va  
  EHT99008.1 33 MVMVGPSGCGKSTLLRMVAGL 53
                6899**************986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.6e-05     0.043      47      66 ..      32      51 ..      17      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-05
       Rad17 47 iLLisGPsGCgkstvvkvLs 66
                 +++ GPsGCgkst +++++
  EHT99008.1 32 FMVMVGPSGCGKSTLLRMVA 51
                67899***********9876 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0007      0.54      15      48 ..      26      60 ..      10      64 .. 0.80
   2 ?    1.1   0.0       0.3   2.3e+02      49     109 ..     145     209 ..     138     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0007
                HHHH-SEEEEE--TTSST.THHHHHHHHHHHHTTS CS
        PhoH 15 alkkndivfaiGpaGtGK.tylavalavealkkkk 48
                ++++ ++++++Gp+G+GK t+l +++++e +++++
  EHT99008.1 26 TINDGEFMVMVGPSGCGKsTLLRMVAGLERVTSGD 60
                4567889***********66889999999888765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.3
                 -SEEEEEE-S--T.T----SS---------TTTHHHHHHHTTTS...-TTCHHHHHHTTSEEEEE CS
        PhoH  49 vkriiltrpavea.geelGflpgdleekvdpylrplydaLkdll...gaekvekllekgkievap 109
                 + r i+  pav   +e l  l+  l+ +++  l+ l+  L+++     +++ve ++ ++++ v++
  EHT99008.1 145 MGRAIVREPAVFLfDEPLSNLDARLRVQMRLELQQLHRRLQTTSlyvTHDQVEAMTLAQRVMVMN 209
                 557788889996569*********************99998764344889999999888888875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011     0.083       6      40 ..      17      50 ..      13      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                HHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC  6 ekviekLlekdelqslvvalvGmgGvGKttlakqi 40
                +++i+ L    + +  ++ +vG  G+GK+tl++ +
  EHT99008.1 17 NQIIQPLNVTINDG-EFMVMVGPSGCGKSTLLRMV 50
                67778887533333.59**************9876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00033      0.25       3      21 ..      33      51 ..      31      56 .. 0.89
   2 ?   -1.2   0.2       2.1   1.6e+03      76     126 ..     147     192 ..     106     208 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                +++ G++G+GK+tLl+ +a
  EHT99008.1 33 MVMVGPSGCGKSTLLRMVA 51
                799************9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
                 HCCSCCCEEEEEE-.STT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  76 llelperlLlilDg.lDelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                 ++ ++e +++++D  l  l +      + ++r  L++l r+  l+++sl +t
  EHT99008.1 147 RAIVREPAVFLFDEpLSNLDAR----LRVQMRLELQQLHRR--LQTTSLYVT 192
                 4444445556665323444443....344666677777777..666666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027      0.21      16      41 ..      28      53 ..      18      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_30 16 sgdrvavltGpAGtGKttalkalrea 41
                ++  ++v++Gp G GK+t+l+ ++ +
  EHT99008.1 28 NDGEFMVMVGPSGCGKSTLLRMVAGL 53
                344599***************99765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00048      0.37      30      50 ..      27      47 ..       9      53 .. 0.87
   2 ?   -2.0   0.1       2.9   2.2e+03      85     109 ..     179     202 ..     167     222 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00048
      AAA_25 30 lpagelallaGapgtGKttla 50
                +  ge+ + +G++g+GK+tl+
  EHT99008.1 27 INDGEFMVMVGPSGCGKSTLL 47
                6789***************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
      AAA_25  85 elrrRlravgealrddarllvldla 109
                 +l+rRl+ +   +++d+ + +++la
  EHT99008.1 179 QLHRRLQTTSLYVTHDQVE-AMTLA 202
                 4777777777666554433.33333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038       0.3       2      21 ..      33      54 ..      32     125 .. 0.77
   2 ?   -2.7   0.0       7.7     6e+03      33      48 ..     156     171 ..     133     202 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
      AAA_28  2 ivitGgestGKTtlleaLa..a 21
                 v++G++++GK+tll+  a  +
  EHT99008.1 33 MVMVGPSGCGKSTLLRMVAglE 54
                589************9988442 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.7
      AAA_28  33 eileeklakgedalpw 48 
                  +++e l +    l+ 
  EHT99008.1 156 FLFDEPLSNLDARLRV 171
                 3333333332222222 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00029      0.22      12      37 ..      17      48 ..       6      52 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00029
      AAA_23 12 dqeidF......skgltlItGpNGaGKTTild 37
                +q i+       +  + + +Gp G+GK+T+l+
  EHT99008.1 17 NQIIQPlnvtinDGEFMVMVGPSGCGKSTLLR 48
                4445555556645567799***********97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0005      0.39       2      21 ..      33      52 ..      32      72 .. 0.87
   2 ?   -1.2   0.3       2.3   1.8e+03      73      73 ..     160     160 ..      85     211 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0005
                EEEE--SSSSHHHHHHHGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaa 21
                +++vGp+G+gKs+l + +a 
  EHT99008.1 33 MVMVGPSGCGKSTLLRMVAG 52
                589***********998875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.3
                 S CS
       AAA_5  73 E 73 
                 E
  EHT99008.1 160 E 160
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2583.89
//
Query:       EHT99009.1  [L=281]
Description: membrane component of an ABC superfamily glycerol-3-phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-20   73.7  20.3    1.5e-20   73.7  20.3    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   3.1     0.065   1.2e+03      20      44 ..       8      60 ..       5      92 .. 0.54
   2 !   73.7  20.3   8.4e-25   1.5e-20       2     183 ..      92     276 ..      91     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.065
  BPD_transp_1 20 lrpliivllslPsfvlaillvlvf............................v 44
                  l++++ v+l l ++ ++++l+++f                             
    EHT99009.1  8 LDIFSHVVLVLGILTILFPLYVAFvaatldndavynvpmtlipgthlwenisH 60
                  66677777777777777777777777766666666666666666666654442 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 8.4e-25
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfv.laillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   il++il+a   + ++++l+ l+ ++i+++l+lP+ v +++ ++    ++ +l  l  +  ++l l+a +++++++r+++ slp++l+eaar++Gas 
    EHT99009.1  92 ILVSILSAfalVWFRFPLRSLFFWMIFITLMLPVEVrIFPTVQ----VIADLNMLDSYSGLTLPLMASATATFLFRQFFMSLPDELIEAARIDGASA 184
                   677888888899************************7777777....558889999999************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadilqrlldprv 183
                    + f+ +vlP++++ ++++++++f++ +++++++++++ +  lgt +  + ++  +s      n +++a+++ +++ ++v++++qr++ + +
    EHT99009.1 185 MRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIDNASLGTAVAGIKSMISTSGSPtqwNEVMAAMLLTLIPPVVVVFVMQRAFVRGL 276
                   **************************************888888777666666655544488999**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2121.77
//
Query:       EHT99010.1  [L=295]
Description: membrane component of an ABC superfamily glycerol-3-phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-16   61.2  22.2      1e-16   61.2  22.2    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.6     0.047   8.4e+02     154     178 ..      67      99 ..      12     105 .. 0.51
   2 !   61.2  22.2   5.6e-21     1e-16       7     183 ..      92     292 ..      84     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.047
  BPD_transp_1 154 s........nggvlalviavlllnlvadilqrl 178
                   +        +  + +++++ ++ +l++ +l+++
    EHT99010.1  67 LyldtfwttIKFSSMVAFFGMVSSLLLAALVDY 99 
                   133333333444444444444555554444444 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 5.6e-21
  BPD_transp_1   7 laa..lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   l+a  + +  +l+kl + l  +++++ +++ a+l+ ++f                   + +  g++++ v+++++++++ y++l++ aal+s+pk+l
    EHT99010.1  92 LLAalVDYVVRLRKLYQMLLLLPYAVAPVIAAVLWMFLFspglgllsyllnhmgynwNFAQNSGQAMFLVVLASVWQQMSYNFLFFFAALQSIPKSL 188
                   444477788889999999999999888888666666666888***************999************************************* PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseis...nggvlalviavlllnlvadilq 176
                   veaa ++Ga++ ++f+ + lP++ p+ + +l++++++++ +++ +   ++++G ++ +++ ++ +y   ++      +++  v+++ll+++++ i  
    EHT99010.1 189 VEAAAIDGAGPVRRFFSISLPLITPVSFFLLVVNLIYAFFDTFPVIDAATGGGpVQATTTLIYKIYREGFTGldlSSSAAQSVVLMLLVIALTVIQF 285
                   **************************************88888888888777778888888888888887778887888888888888888888888 PP

  BPD_transp_1 177 rlldprv 183
                   r+++++v
    EHT99010.1 286 RFVERKV 292
                   8888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2186.85
//
Query:       EHT99011.1  [L=436]
Description: periplasmic-binding component of an ABC superfamily glycerol-3-phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-42  146.0  11.4    2.4e-42  145.7  11.4    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    2.4e-36  126.3  10.2    3.8e-36  125.7  10.2    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein
    1.9e-05   24.2   0.2      0.062   12.7   0.0    2.3  2  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7  11.4   3.9e-46   2.4e-42       2     277 ..      44     365 ..      43     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 3.9e-46
                 HHHHHHHH-.TEEEEEEE-.-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGS.TTHHH.......-HHHHHTT.--TS.----EE CS
   SBP_bac_8   2 lakefekkt.gvkvnvvta.asndleqklkaalaagtapdidvvwanedalatlaeeglladlsdl.dnldd.......ltdalaav.gydgklygvPy 89 
                 la++f++++ ++k+  v+  +++++ +   aa+ +g+ap+  +++ +e   at+ ++++++++ ++ +++         +++++a++   +g+l + P+
  EHT99011.1  44 LAQRFNQEHpDYKIVPVYKgNYEQSLAAGIAAVRTGKAPA--LLQVYEVGTATMMASKAIVPVYQVfKDAGIsmdekqfVPAVAAYYsNSKGQLISQPF 140
                 6899**************9999999999999999****97..6777778899************65333333555666478888888666********* PP

                 EEEEE-EEEEEHHHHHHS......---BHHHHHHHHHHHHHH-SEG.G---GGGGGGTHH.............ETTEE---H.....HHH.HHHHHHHH CS
   SBP_bac_8  90 asetpyvliynkdlleka.....edpktwdellaaakklkgkfglp.dpasgwlqaalla.............kdgksldddg...gkdglkealellk 166
                 +s+tp vl+ynkd+++ka     ++pktw+el + a++l  k g++   asgw  ++++              ++g + +d +   +k+++++ ++ll 
  EHT99011.1 141 NSSTP-VLYYNKDAFKKAglnpdQPPKTWQELAKDADAL-RKSGMScGYASGWQGWIQIEnfsawnglpvatkNNGFDGTDAVlefNKPAQVRHIQLLE 237
                 ****9.***********9999******************.677665345566666666666668877777777666666666689999999******** PP

                 HHHHTT-EE..-S..--SSTTTTTSBSEEEE-TTHHHHHH-T.TTSEEEE.--........S--EEEEEEEEEEBTTS-HHHH.HHHHHHHHHTTSHHH CS
   SBP_bac_8 167 klkdngkty..dtgadavsefanGevaftingswdiaaaqka.gkklgai.vp........kqgsfaggkglavpknaknedl.aAldFlkwltspenq 252
                 +++++g+++  +  ++ +++f nG+  +t+++s+++a+++   ++ +g++ +p        +q +++gg++l+v+k++++ ++ +A++F+k+lt+p   
  EHT99011.1 238 DMNKKGDFTyfGRKDESTAKFYNGDCGMTTASSGSLADIRHYaKFHYGVGmMPydadipnaPQNAIIGGASLWVMKGKDANTYkGAAEFMKFLTEPKIA 336
                 *******55577779999**********************774679999965667666676678*********************************** PP

                 HHHHHHH---BS-S-TTT....HHHHHH- CS
   SBP_bac_8 253 aalaektgyipvnksaal....spevkkd 277
                 a++++ktgy+p++++a++      ++ k+
  EHT99011.1 337 AEWHQKTGYLPITTAAYEltkkEGFYEKN 365
                 ****************9754323335555 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7  10.2   6.3e-40   3.8e-36      10     312 ..      41     334 ..      34     337 .. 0.88

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 6.3e-40
                 HHHHHHHHHHHHHTTEEEEEEEECHHHHHH...HHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesvgsgslaq...kltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds 104
                  + l+ ++f++ehp++k++ ++   g++ q   ++++a+ +G++p  + +v + ++ + +a +++  p+  ++k+  +  +++ + ++   v +++ +s
  EHT99011.1  41 VDSLA-QRFNQEHPDYKIVPVYK--GNYEQslaAGIAAVRTGKAP-ALLQVyEVGTATMMA-SKAIVPVYQVFKDAGISMDEKQFVPA---VAAYYSNS 131
                 56677.99***************..99999888999999999988.999995655555555.55889999999999888877665553...33333334 PP

                 EE.ES.EEEEE.EEEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT........HHC CS
   SBP_bac_1 105 kv.ly.vPlya.argliYNkdlfekagldp...pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg........gld 189
                 k+ l   P+++ + +l+YNkd f+kagl+p   p+tW+el++ a  l++     +g++ g++ ++++++  +++++++g +v++k++g         ++
  EHT99011.1 132 KGqLIsQPFNSsTPVLYYNKDAFKKAGLNPdqpPKTWQELAKDADALRK-----SGMSCGYASGWQGWIQIENFSAWNGLPVATKNNGfdgtdavlEFN 225
                 77********66*****************************99999999.....78999*******************************999999999 PP

                 SHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE....E CS
   SBP_bac_1 190 npegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi....l 284
                 +p++v  ++ l++++        +kg+ ++    ++ +a f++G+++m+ +++++            +a++ +++k+++gv ++P+  + +++     +
  EHT99011.1 226 KPAQVRHIQLLEDMN--------KKGDFTYFGRKDESTAKFYNGDCGMTTASSGS------------LADIRHYAKFHYGVGMMPYDADIPNAPqnaiI 304
                 999999999999999........*************************9999888............*******************99999999****9 PP

                 EEEEEEEBTTCST..HHHHHHHHHHHTSHH CS
   SBP_bac_1 285 gayglaipkgskn..peaAkkFldfllspe 312
                 g+  l+++kg +    ++A +F++fl++p+
  EHT99011.1 305 GGASLWVMKGKDAntYKGAAEFMKFLTEPK 334
                 9999*******9976677**********98 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     1e-05     0.062      33      82 ..     122     173 ..      92     175 .. 0.79
   2 !    9.4   0.0   0.00011      0.63     182     228 ..     310     357 ..     299     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1e-05
   SBP_bac_6  33 pnvnkdfaeeglkdpdgkyy..pygvgplvlavnkdrlkgrpv.....PksWaDLld 82 
                 p v+     + ++ ++g+ +  p++ ++ vl++nkd++k+  +     Pk+W++L +
  EHT99011.1 122 PAVA-----AYYSNSKGQLIsqPFNSSTPVLYYNKDAFKKAGLnpdqpPKTWQELAK 173
                 3344.....5666679999999******************999999999******87 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
   SBP_bac_6 182 mlvkkg..kkkelakafidfllspevqailakaggvfPvvtnpavlnel 228
                 +++k +   + + a++f+ fl++p+++a +   +g +P+ t +a +   
  EHT99011.1 310 WVMKGKdaNTYKGAAEFMKFLTEPKIAAEWHQKTGYLPI-TTAAYELTK 357
                 44443347799************************9999.555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3338.26
//
Query:       EHT99012.1  [L=235]
Description: ATP-binding component of an ABC superfamily leucine/isoleucine/valine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-34  117.0   0.0    1.2e-33  116.5   0.0    1.2  1  ABC_tran      ABC transporter
    1.6e-10   41.3   0.1    0.00019   21.3   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00075   19.2   0.1     0.0018   18.0   0.1    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.003   18.0   0.1     0.0062   16.9   0.1    1.6  1  AAA_16        AAA ATPase domain
     0.0041   17.0   0.1     0.0086   16.0   0.0    1.5  2  RsgA_GTPase   RsgA GTPase
     0.0097   16.4   0.1      0.015   15.8   0.1    1.3  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.015   15.4   0.1      0.038   14.1   0.1    1.6  2  MMR_HSR1      50S ribosome-binding GTPase
      0.018   14.5   0.1        2.5    7.5   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
       0.02   14.6   0.1      0.034   13.9   0.1    1.3  1  AAA_15        AAA ATPase domain
      0.028   14.4   0.0      0.056   13.4   0.0    1.5  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
      0.029   14.5   0.4      0.098   12.8   0.4    2.1  1  AAA_33        AAA domain
      0.031   13.9   0.1      0.064   12.8   0.1    1.5  1  AAA_25        AAA domain
      0.041   13.9   0.1       0.56   10.3   0.0    2.3  2  AAA_14        AAA domain
      0.045   12.4   0.0      0.064   11.9   0.0    1.2  1  AAA_13        AAA domain
      0.093   13.0   0.1       0.46   10.8   0.0    2.0  2  AAA_22        AAA domain
       0.12   12.6   0.3        1.3    9.3   0.3    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.12   12.0   0.1       0.21   11.2   0.1    1.4  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.14   11.8   0.5       0.21   11.3   0.5    1.6  1  AAA_30        AAA domain
       0.17   11.8   0.5       0.32   10.9   0.1    1.6  2  NACHT         NACHT domain
       0.17   11.9   0.1       0.32   11.0   0.1    1.4  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.18   12.1   0.5       0.38   11.0   0.5    1.6  1  AAA_28        AAA domain
        0.2   11.9   0.0       0.36   11.1   0.0    1.4  1  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.34    8.4   0.4       0.43    8.0   0.4    1.1  1  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   1.5e-36   1.2e-33       1     136 [.      19     163 ..      19     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 1.5e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren...........esdeeiek 87 
                 l+nvsl++ +ge+v ++G nGaGK+tLl +l+g+ + t+G+i++dgk +++ q+ +++r+ i+++p+  ++f+++tv+en           e+ ++ie+
  EHT99012.1  19 LHNVSLHIDQGEIVTLIGANGAGKTTLLGTLCGEPRATSGTITFDGKTITDwQTARIMREAIAIVPEGRRVFSRMTVEENlamggffasrpEYLARIER 117
                 79*************************************************999*********************************999988899999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + + +      +++v +++ ++SgG++q++a+ ral+++p+llllDEp+
  EHT99012.1 118 VYTLFPRLA--ERKV-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 163
                 999998655..7777.678*****************************5 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-06    0.0015       2      44 ..      32      70 ..      31     100 .. 0.73
   2 !   21.3   0.1   2.5e-07   0.00019     234     293 ..     133     189 ..     109     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44
                  liG+Ng+GK++LL +l   ++  + ++++t++++g+  +++
  EHT99012.1 32 VTLIGANGAGKTTLLGTL---CG-EPRATSGTITFDGKTITDW 70
                679************999...33.5555555555555544444 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.5e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293
                 a  +S G +++la+  al +++   +lll+DEp +gL P ++  +++ +++l+++g  ++
  EHT99012.1 133 AGTMSGGEQQMLAIGRALMSQP---RLLLLDEPSLGLAPIIIQQIFDTIEQLRSEGMTIF 189
                 6789*******99999999988...************************99988766665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.3e-06    0.0018      12      39 ..      19      46 ..      11      50 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.3e-06
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTll 39
                +++ +++id+ +++ l+G++G+GK+Tll
  EHT99012.1 19 LHNVSLHIDQGEIVTLIGANGAGKTTLL 46
                46677888866699*************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1     8e-06    0.0062      18      63 ..      23      69 ..      13     163 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8e-06
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql 63
                +++ +++e+v l+G+ G GK++l+ +l  + +++ g i++ gk+   
  EHT99012.1 23 SLHIDQGEIVTLIGANGAGKTTLLGTLCGEPRATsGTITFDGKTITD 69
                45556679****************87775444432566666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.1e-05    0.0086      88     130 ..      17      60 ..       4      76 .. 0.80
   2 ?   -3.2   0.0       8.5   6.7e+03      68      89 ..     177     198 ..     172     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++l++++ ++++ ++++l+G  G+GK+tL+ +l +e ++  g +
   EHT99012.1  17 QALHNVSLHIDQgEIVTLIGANGAGKTTLLGTLCGEPRATSGTI 60 
                  55666666777779********************9977666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.5
                  HHHHHHHTTSEEEE--TTTHTT CS
  RsgA_GTPase  68 lkeelealgyevllvsaktkeg 89 
                  + e+l++ g++++lv+++ +++
   EHT99012.1 177 TIEQLRSEGMTIFLVEQNANQA 198
                  5677777888888887665544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.9e-05     0.015      10      40 ..      12      50 ..       4      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-05
      AAA_23 10 f.......rdqeidFsk.gltlItGpNGaGKTTildAik 40
                +       ++++++ ++  ++ ++G NGaGKTT+l  ++
  EHT99012.1 12 HygkiqalHNVSLHIDQgEIVTLIGANGAGKTTLLGTLC 50
                544443335555555552588899**********96665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.9e-05     0.038       2      34 ..      32      67 ..      31      89 .. 0.76
   2 ?   -1.8   0.0         4   3.1e+03      47      56 ..     155     164 ..     120     210 .. 0.49

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.9e-05
                EEEEESTTSSHHHHHHHHHTS.TEEESSST..TSSS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.kaivsdkp..gtTr 34
                v ++G   +GK+tL+ +l+ge +a  + +   g+T+
  EHT99012.1 32 VTLIGANGAGKTTLLGTLCGEpRATSGTITfdGKTI 67
                789*****************9877666555114443 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4
                 EEEEEECGGC CS
    MMR_HSR1  47 eielvDtpGl 56 
                 ++ l+D p l
  EHT99012.1 155 RLLLLDEPSL 164
                 4455555542 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0032       2.5      25      43 ..      30      48 ..      15      51 .. 0.78
   2 ?    5.2   0.0     0.016        12     135     189 ..      85     184 ..      53     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0032
                SEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldA 43
                ++  ++G+NG+GK+ ll  
  EHT99012.1 30 EIVTLIGANGAGKTTLLGT 48
                46789*********99865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.016
                 T.................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 x.................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                 e                                                 ++SgGe++++a+   +   + +p  l llDe    L    ++++ + ++
  EHT99012.1  85 EgrrvfsrmtveenlamggffasrpeylariervytlfprlaerkvqragTMSGGEQQMLAIGRAL---MSQP-RLLLLDEPSLGLAPIIIQQIFDTIE 179
                 355555555555555555555556666666666666667777777777779*******99885432...2333.3667788777777777777777777 PP

                 HHCTT CS
                 xxxxx RF
       SMC_N 185 ekskn 189
                 + +++
  EHT99012.1 180 QLRSE 184
                 66655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.3e-05     0.034      14      41 ..      19      47 ..      17      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsile 41
                l +v+++++   + +liG+N++GK+++l 
  EHT99012.1 19 LHNVSLHIDQGeIVTLIGANGAGKTTLLG 47
                556777777766**************995 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.1e-05     0.056      11      23 .]     222     234 ..     214     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.1e-05
  BCA_ABC_TP_C  11 vrndPrVieAYLG 23 
                     ++++V+ AYLG
    EHT99012.1 222 LLSNEAVRSAYLG 234
                   579*********9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   0.00013     0.098       2      24 ..      32      54 ..      31     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_33  2 vllvGlpGsGKstlaerllkklg 24
                v l+G++G+GK+tl+  l+ +  
  EHT99012.1 32 VTLIGANGAGKTTLLGTLCGEPR 54
                789************99998766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.2e-05     0.064      26      53 ..      22      49 ..      15      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.2e-05
      AAA_25 26 vkgllpagelallaGapgtGKttlaldl 53
                v  ++  ge++ l+Ga g+GKttl+  l
  EHT99012.1 22 VSLHIDQGEIVTLIGANGAGKTTLLGTL 49
                566899******************8655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00071      0.56       2      37 ..      29      61 ..      28      90 .. 0.72
   2 ?    1.3   0.0      0.41   3.2e+02      68     109 ..     188     227 ..     140     231 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00071
      AAA_14  2 rkilvitGaRrvGKTtllkqlikellvkkesilyin 37
                ++i+++ Ga  +GKTtll +l  e          i+
  EHT99012.1 29 GEIVTLIGANGAGKTTLLGTLCGEPR---ATSGTIT 61
                689***************99987766...3333444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.41
      AAA_14  68 lflDEiqevpewekalkslvdeg...knldvivtGSnskllskei 109
                 +fl E    +++ +alk l d+g   +n++v++  S + lls+e+
  EHT99012.1 188 IFLVE----QNANQALK-LADRGyvlENGHVVLEDSGAALLSNEA 227
                 33333....22223332.233333445789999999999998876 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.2e-05     0.064      23      76 ..      36     100 ..      27     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.2e-05
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfangsi........eitnge............eldirVfNrdFveenls 76 
                 G+NGaGKTtL   l        ep+ ++g+i         +   +            ++  rVf+r  veenl+
  EHT99012.1  36 GANGAGKTTLLGTLCG------EPRATSGTItfdgktitDW---QtarimreaiaivPEGRRVFSRMTVEENLA 100
                 9********9988877......3667777774444444533...1444677778888999************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00059      0.46       4      25 ..      28      49 ..      25     100 .. 0.84
   2 ?    0.1   0.0       1.1   8.9e+02      81      99 ..     142     161 ..     105     209 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00059
      AAA_22  4 tagilvvtGesGtGKTtllrrl 25
                +  i++++G  G+GKTtll +l
  EHT99012.1 28 QGEIVTLIGANGAGKTTLLGTL 49
                66799*************9776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
      AAA_22  81 aleqalrarav.ielliiDE 99 
                 ++    ra +  ++ll++DE
  EHT99012.1 142 QMLAIGRALMSqPRLLLLDE 161
                 33344444444566888887 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3    0.0017       1.3      28      42 ..     131     145 ..     124     180 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
     SbcCD_C  28 rssgtlSGGekqfla 42 
                 +++gt+SGGe+q+la
  EHT99012.1 131 QRAGTMSGGEQQMLA 145
                 789********7764 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00027      0.21       3      22 ..      32      52 ..      30      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
                EEEEESTTCCHHHHHHHHH.C CS
        cobW  3 tvltGflGsGKTtLlnhll.e 22
                + l G  G+GKTtLl +l+ e
  EHT99012.1 32 VTLIGANGAGKTTLLGTLCgE 52
                6788999**********9942 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00027      0.21      15      42 ..      26      53 ..      13     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaw 42
                 ++  +++l G+ G+GKtt+l++l    
  EHT99012.1 26 IDQGEIVTLIGANGAGKTTLLGTLCGEP 53
                45566999*************9985444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0004      0.32       2      21 ..      31      50 ..      30      57 .. 0.88
   2 ?   -3.2   0.0       8.7   6.8e+03      54      69 ..     166     181 ..     149     197 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v l G++G GKTtLl  l+
  EHT99012.1 31 IVTLIGANGAGKTTLLGTLC 50
                5889************9886 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.7
                 HCHHHCCCCTS--SSS CS
       NACHT  54 ladllfsqlpepaapv 69 
                 la ++ +q  + +++ 
  EHT99012.1 166 LAPIIIQQIFDTIEQL 181
                 4444444443333333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00042      0.32      12      40 ..      24      50 ..      10      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00042
                HHHHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE 12 kklakalgdvilLeGdLGaGKTtlvrgla 40
                 ++ +  g++++L G  GaGKTtl   l+
  EHT99012.1 24 LHIDQ--GEIVTLIGANGAGKTTLLGTLC 50
                33333..889**************98776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00048      0.38       2      19 ..      32      49 ..      31      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00048
      AAA_28  2 ivitGgestGKTtlleaL 19
                + ++G+ ++GKTtll  L
  EHT99012.1 32 VTLIGANGAGKTTLLGTL 49
                679***********9888 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00046      0.36       2      32 ..      32      62 ..      31      81 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00046
                EEEESSTTSSHHHHHHCHCT-CCC-EEETTT CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekeksti 32
                v l+G +g+GKt+ll  ++ +   ++ + t+
  EHT99012.1 32 VTLIGANGAGKTTLLGTLCGEPRATSGTITF 62
                679***************9887765544444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.4   0.00055      0.43      17      36 ..      29      48 ..      22      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00055
     DUF3584 17 dghtnieGtNaaGKTtLlrL 36
                 + + + G+N+aGKTtLl +
  EHT99012.1 29 GEIVTLIGANGAGKTTLLGT 48
                5668899**********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1655.07
//
Query:       EHT99013.1  [L=255]
Description: ATP-binding component of an ABC superfamily leucine/isoleucine/valine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-33  115.9   0.0    2.4e-33  115.6   0.0    1.1  1  ABC_tran      ABC transporter
    3.7e-11   42.7   0.9    5.5e-11   42.1   0.1    1.8  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    2.8e-06   27.4   0.1    0.00098   19.0   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00012   22.7   0.1    0.00017   22.2   0.1    1.3  1  AAA_23        AAA domain
     0.0016   18.2   0.1       0.02   14.6   0.0    2.0  2  AAA_15        AAA ATPase domain
     0.0034   16.9   0.0       0.15   11.5   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0047   16.6   0.0      0.011   15.4   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0049   17.3   0.1       0.01   16.2   0.1    1.6  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.015   15.6   0.1       0.17   12.1   0.0    2.2  2  AAA_22        AAA domain
      0.039   13.8   0.0      0.076   12.9   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
       0.06   12.9   0.1       0.11   12.1   0.1    1.4  1  FeoB_N        Ferrous iron transport protein B
      0.068   12.9   0.1       0.26   11.0   0.0    1.8  2  AAA_30        AAA domain
      0.094   12.3   0.0       0.23   11.1   0.0    1.6  1  SRP54         SRP54-type protein, GTPase domain
       0.18   11.7   0.0        0.3   11.0   0.0    1.3  1  Rad17         Rad17 P-loop domain
       0.19   11.8   0.3       0.45   10.6   0.2    1.8  2  MMR_HSR1      50S ribosome-binding GTPase
       0.23   10.9   0.0       0.36   10.2   0.0    1.4  1  SRPRB         Signal recognition particle receptor beta subun
       0.31    8.5   0.1       0.42    8.1   0.1    1.1  1  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   2.2e-36   2.4e-33       1     136 [.      21     181 ..      21     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................... 79 
                 ++nv+l+l++ e+v ++G+nGaGK+t++++l+g +kpt G+i+l++k+l+     +++r  i   +q+ +lf+e+tv en                   
  EHT99013.1  21 VNNVKLELRPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGSITLRDKNLTGlPGQKIARMGIVRTFQHVRLFREMTVIENllvaqhqhlksgvfagllk 119
                 589************************************************99999******************************************* PP

                 .........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                          e+ ++++++l+++gl +++++ +     +L +Gq++r+++ar+++++p++l+lDEp 
  EHT99013.1 120 tpafrrsegEALDRAATWLERVGLLDMANRQA----GNLAYGQQRRLEIARCMVTRPEILMLDEPA 181
                 ****9998888888************999999....*****************************7 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   5.2e-14   5.5e-11       3      23 .]     233     253 ..     231     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.2e-14
  BCA_ABC_TP_C   3 IAeGtPaEvrndPrVieAYLG 23 
                   +A GtP+E+rn+P+Vi+AYLG
    EHT99013.1 233 LANGTPEEIRNNPDVIRAYLG 253
                   899*****************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.3e-07   0.00098       3      23 ..      35      55 ..      33     138 .. 0.78
   2 !    6.8   0.0    0.0048       5.1     252     278 ..     168     192 ..     145     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.3e-07
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                 liGpNg+GK++++ +l ++ 
  EHT99013.1 35 SLIGPNGAGKTTVFNCLTGFY 55
                69***************8874 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0048
      AAA_21 252 lralkkgsllliDEpEngLHPkllrrl 278
                   +++   +l +DEp +gL+Pk +++l
  EHT99013.1 168 MVTRP--EILMLDEPAAGLNPKETHEL 192
                 44554..8*************988776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.6e-07   0.00017      11      40 ..      22      52 ..      12      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.6e-07
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTildAik 40
                +++++++ +  ++ ++GpNGaGKTT++++++
  EHT99013.1 22 NNVKLELRPqEIVSLIGPNGAGKTTVFNCLT 52
                66777885548999***************97 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.9e-05      0.02      16      48 ..      23      56 ..      20     106 .. 0.86
   2 ?    1.6   0.1      0.17   1.8e+02     323     355 ..     171     203 ..     159     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
      AAA_15 16 dveidlsee.ltvliGkNnsGKSsilealdlFln 48
                +v+++l ++ +  liG+N++GK+++ + l  F +
  EHT99013.1 23 NVKLELRPQeIVSLIGPNGAGKTTVFNCLTGFYK 56
                788999988899*************999988876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandn 355
                 ++ il+++EP a L p+   +l  l++el  ++
  EHT99013.1 171 RPEILMLDEPAAGLNPKETHELDALIAELRGEH 203
                 789*************99988888888776665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00014      0.15      24      44 ..      31      51 ..      19      79 .. 0.79
   2 ?    3.5   0.0     0.038        41     154     213 ..     167     226 ..     133     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                +++ +++GpNG+GK+ +++ +
  EHT99013.1 31 QEIVSLIGPNGAGKTTVFNCL 51
                457899***********9887 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.038
                 HCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 154 qkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213
                  +v +  + +lDe +a L  k+++++  l+ e + +  + v  ++++m   +    +++ 
  EHT99013.1 167 CMVTRPEILMLDEPAAGLNPKETHELDALIAELRGEHKVSVLLIEHDMKLVMGISDRIYV 226
                 5566667899*********************99988887777777777655544444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05     0.011      14      40 ..      23      49 ..      20      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllD 40
                + ++e+++++++ l+Gp+G+GK+T++ 
  EHT99013.1 23 NVKLELRPQEIVSLIGPNGAGKTTVFN 49
                5678999999**************985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.6e-06      0.01      24      85 ..      30      95 ..      22     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.6e-06
      AAA_16 24 p.elvllsGesGvGKsslvrellralekdg.giflrgkcdql..esaipysalaqalareellrql 85
                p e+v l+G+ G GK+++ ++l   ++ +g  i+lr k+     +++i++  +++++   +l+r++
  EHT99013.1 30 PqEIVSLIGPNGAGKTTVFNCLTGFYKPTGgSITLRDKNLTGlpGQKIARMGIVRTFQHVRLFREM 95
                4589*******************9999996567788887777777777777788888655555543 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017      0.17       5      29 ..      31      55 ..      27     114 .. 0.88
   2 ?    1.4   0.0      0.33   3.5e+02      86     128 ..     164     210 ..     124     215 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                + i+ ++G+ G+GKTt+ + l+  +
  EHT99013.1 31 QEIVSLIGPNGAGKTTVFNCLTGFY 55
                78999************99887665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.33
      AAA_22  86 lrarav..ielliiDEaqh.lrseealeeL.rsllnl.srkgvqliLv 128
                 + +++v  +e+l++DE    l+ ++   eL   +++l ++++v+++L+
  EHT99013.1 164 IARCMVtrPEILMLDEPAAgLN-PKETHELdALIAELrGEHKVSVLLI 210
                 4445557889999999888895.3333333222333344888888876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.2e-05     0.076      92     122 ..      23      54 ..      12      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.2e-05
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++k +l+  +++ l+G+ G+GK+t+ n l++ 
   EHT99013.1  23 NVKLELRPqEIVSLIGPNGAGKTTVFNCLTGF 54 
                  5666777768999***************9875 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0001      0.11       3      27 ..      34      58 ..      32      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                EEEEESTTSSHHHHHHHHHTTSEEE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakqkv 27
                v l+G   +Gktt+fn ltg ++  
  EHT99013.1 34 VSLIGPNGAGKTTVFNCLTGFYKPT 58
                789*****************98765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025      0.26      18      49 ..      31      62 ..      24      79 .. 0.87
   2 ?   -0.7   0.0      0.95     1e+03      81     120 ..     142     208 ..     111     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrv 49
                + ++ l Gp G+GKtt+ + l+  ++  gg++
  EHT99013.1 31 QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGSI 62
                5578899**************99999888666 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.95
      AAA_30  81 k......................grarlepgtllivDEagmv....dtkqlaallkaaekag.akvi 120
                 +                      +r  +++ ++l+ DE +       t++l+al+++++ ++ ++v+
  EHT99013.1 142 GlldmanrqagnlaygqqrrleiARCMVTRPEILMLDEPAAGlnpkETHELDALIAELRGEHkVSVL 208
                 3444444444444455555566655566677888888844433466788888888887764325555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.23       3      32 ..      33      62 ..      31      66 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-E CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkv 32
                ++ l+G++GaGKTt    L   +k  g ++
  EHT99013.1 33 IVSLIGPNGAGKTTVFNCLTGFYKPTGGSI 62
                7889************99999888776665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00029       0.3      38      66 ..      24      52 ..      19      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLs 66
                  Le r+++i+ + GP G gk+tv + L+
  EHT99013.1 24 VKLELRPQEIVSLIGPNGAGKTTVFNCLT 52
                579999******************99886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00042      0.45       2      21 ..      34      53 ..      33      91 .. 0.86
   2 ?   -2.8   0.0         6   6.3e+03      64      73 ..     192     202 ..     156     225 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                v ++G   +GK+t++n ltg
  EHT99013.1 34 VSLIGPNGAGKTTVFNCLTG 53
                789***************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6
                 H.HHHHHHHHH CS
    MMR_HSR1  64 k.glgkaflal 73 
                    l  +++  
  EHT99013.1 192 LdALIAELRGE 202
                 12333333333 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.36       3      35 ..      31      62 ..      29     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
                --EEEEE-STTSSHHHHHHHHHHSS---B---S CS
       SRPRB  3 kpavllvGlsdsGKTslftrLttdsvkktvtSq 35
                +++v l+G+  +GKT++f+ Lt + +k+t  S+
  EHT99013.1 31 QEIVSLIGPNGAGKTTVFNCLT-GFYKPTGGSI 62
                567889*************986.6666666665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0004      0.42      13      41 ..      27      55 ..      23      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0004
     DUF3584 13 eldldghtnieGtNaaGKTtLlrLiPlFY 41
                el++++ + + G N+aGKTt+   +  FY
  EHT99013.1 27 ELRPQEIVSLIGPNGAGKTTVFNCLTGFY 55
                999*****************998888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1919.75
//
Query:       EHT99014.1  [L=423]
Description: membrane component of an ABC superfamily leucine/isoleucine/valine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-56  191.5  31.6    1.5e-56  191.5  31.6    2.1  2  BPD_transp_2  Branched-chain amino acid transport system / pe
    6.7e-22   77.6   5.9    6.7e-22   77.6   5.9    4.2  5  DUF3382       Domain of unknown function (DUF3382)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.8     0.055   4.9e+02     233     264 ..      19      54 ..       4     108 .. 0.49
   2 !  191.5  31.6   1.7e-60   1.5e-56       4     268 .]     112     397 ..     109     397 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.055
  BPD_transp_2 233 iGaliigvvksllltllgi....ptelarvllgall 264
                   ++a+ +g+  +l +t+l+i    +  ++ +++g  +
    EHT99014.1  19 LAAFFMGMRLDLNGTQLQIvnagSVRWNWIFIGCAV 54 
                   222222222222222222222222222222222222 PP

  == domain 2  score: 191.5 bits;  conditional E-value: 1.7e-60
  BPD_transp_2   4 nlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltl 100
                    ++tl++i+++++lGl++v+g++G++ lg ggf+a+Gay++all ++++  ++ +l++a lv++a+gl+lg++vlrl+ d+l+i++l++ ++v+++l
    EHT99014.1 112 DIATLTLIYIMLGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGFGFWQSLPLAGLVAGAFGLMLGFPVLRLRGDYLAIVTLGFGEIVRILL 208
                   6899********************************************************************************************* PP

  BPD_transp_2 101 llltgitsgvkgqssvkellgfagallsflsaviv........................llalllvlavllllrrtrfGralravgeneeaaralGi 173
                   l++t it+g++g+++++++++f  ++  ++s+  +                        ll+++l+l+v+ +l+r+++Gra++a++e+e a+r lG+
    EHT99014.1 209 LNNTAITGGPNGIAQIPKPTFFGLEFGRRVSEGGWgtfhdvfgmkygpndrviflylvaLLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGL 305
                   ************************************************************************************************* PP

  BPD_transp_2 174 nvkrvklltfvisgalAglaGallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +++r+kl++f is+++Ag+aG l+a+++g+++p ++ +  +  ++a+vvlGg+gs ++++++a++++v+ +l++ l     e+++++lgal++l++
    EHT99014.1 306 SPTRIKLTAFTISAVFAGFAGTLFAARQGFVSPeSFTFVESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDLN----EYSMLVLGALMVLMM 397
                   ***************************************************************************96....99**********997 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   5.9   7.5e-26   6.7e-22       3      97 .]       6     102 ..       5     102 .. 0.97
   2 ?   -2.8   1.1      0.87   7.8e+03      13      25 ..     115     127 ..     113     133 .. 0.77
   3 ?   -1.1   0.5      0.26   2.3e+03      10      35 ..     170     196 ..     165     209 .. 0.72
   4 ?   -0.4   0.7      0.16   1.5e+03      41      66 ..     268     294 ..     249     326 .. 0.63
   5 ?   -2.8   1.9      0.91   8.2e+03      40      48 ..     364     372 ..     344     400 .. 0.60

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 7.5e-26
     DUF3382   3 LknAliaallalvlfvpilGlqleldgtrlvlep....rwglvaiavavvfvgqLlrplllqalkarkklkkveskadgvlvltqrwiillllvvAlvw 97 
                 L nA+++a+++lvl+++++G++l l+gt+l++ +    rw++++i++avvf++qLlrpl++ +l + ++   v +++dg++  +q+ i+ l++++A++w
  EHT99014.1   6 LVNAIVSAVMLLVLAAFFMGMRLDLNGTQLQIVNagsvRWNWIFIGCAVVFLFQLLRPLFQGKLTR-SGGGLVLPGFDGSTP-KQKAIMGLMIAAAVIW 102
                 79***************************************************************9.77789********99.***************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.87
     DUF3382  13 alvlfvpilGlql 25 
                 +l l++ +lGl l
  EHT99014.1 115 TLTLIYIMLGLGL 127
                 7889999999955 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.26
     DUF3382  10 allalvlfvpilGl.qleldgtrlvle 35 
                 a l+++ f+++lG+  l l g  l + 
  EHT99014.1 170 AGLVAGAFGLMLGFpVLRLRGDYLAIV 196
                 556777799999998888877666655 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.16
     DUF3382  41 vaiavavvfv.gqLlrplllqalkark 66 
                 ++++v++ fv  +Llr  l +a+ a +
  EHT99014.1 268 LLLVVLTLFViNRLLRMPLGRAWEALR 294
                 333333333314666666666666554 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 0.91
     DUF3382  40 lvaiavavv 48 
                  +++a+++v
  EHT99014.1 364 VILAAILLV 372
                 333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3462.15
//
Query:       EHT99015.1  [L=308]
Description: membrane component of an ABC superfamily leucine/isoleucine/valine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-66  224.8  44.1    1.3e-66  224.6  44.1    1.0  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.18   11.7   0.1    1.4  1  Protoglobin   Protoglobin


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.6  44.1   1.4e-70   1.3e-66       2     268 .]      12     292 ..      11     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 224.6 bits;  conditional E-value: 1.4e-70
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl....lllallvallvgaavglllgllvlrlkvdel......... 85 
                   ++n++tl++++a++A+G+++v+gi+G+in++hg+++++G+yv+++++a+l+++     +l++++++++++++  ++g+++ r+ ++++         
    EHT99015.1  12 MFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMVIAALMMMgidtGWLMIAAGFVMAVIISSAYGWSIERVAYRPVraskrlial 108
                   89*********************************************************************************************** PP

  BPD_transp_2  86 iitllllsvlvgltlllltgitsgvkgqs.....svkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkr 177
                   i++++++++l++++   lt+++++ + +s     +  + +  + a ls+++ vi+++++l++la++l++r++r+Gra+ra++e+ ++a +lGin++r
    EHT99015.1 109 ISAIGMSIFLQNYVS--LTQGSRDLALPSlitgqWTLGESNGFAATLSTMQIVIWVVTFLAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDR 203
                   ***************..999999999999884444444455677889999*********************************************** PP

  BPD_transp_2 178 vklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   v+ ltfvi++a+A++aG+ll +++gsi+p+ig+++g++a++a+vlGg+gs+ g++iG+l++g++++l++++l  +te+++v+++alli+vl
    EHT99015.1 204 VISLTFVIGAAMAAVAGVLLGQFYGSINPFIGFMAGMKAFTAAVLGGIGSIPGAMIGGLVLGIAEALTSAYL--STEYKDVVSFALLIVVL 292
                   ***********************************************************************9..68*************97 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.1e-05      0.18      96     149 ..      63     124 ..       8     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
                  HCT--HHHHHHCHHHHHHHHHHHHCCCS.........-SHHHHHHHHHHHHHHHHHHHHHHC CS
  Protoglobin  96 rlgleprwyiaalglvqevllealleke........klsaaektalvkalnKliwldndlal 149
                   +g+++ w++ a g+v++v++      +         +  ++++al++a+   i+l+n   l
   EHT99015.1  63 MMGIDTGWLMIAAGFVMAVIISSAYGWSiervayrpVRASKRLIALISAIGMSIFLQNYVSL 124
                  89********************999999999999999999*****************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2431.04
//
Query:       EHT99016.1  [L=374]
Description: periplasmic-binding component of an ABC superfamily leucine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-60  205.0   8.1    2.8e-60  204.8   8.1    1.0  1  Peripla_BP_6  Periplasmic binding protein
    7.9e-24   84.4   0.0    1.1e-23   83.9   0.0    1.2  1  ANF_receptor  Receptor family ligand binding region
    9.8e-21   74.1   0.0    1.2e-20   73.8   0.0    1.1  1  Peripla_BP_5  Periplasmic binding protein domain
     0.0065   16.1   3.9     0.0065   16.1   3.9    2.2  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
       0.07   12.1   0.7        1.5    7.7   0.0    2.3  2  Bmp           ABC transporter substrate-binding protein PnrA-
      0.076   12.4   0.0        1.2    8.4   0.0    2.2  2  ZnuA          Zinc-uptake complex component A periplasmic
      0.097   12.4   0.6       0.49   10.1   0.0    2.2  2  PGM_PMM_I     Phosphoglucomutase/phosphomannomutase, alpha/be


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.8   8.1   1.1e-63   2.8e-60       2     328 ..      26     354 ..      25     369 .. 0.92

  Alignments for each domain:
  == domain 1  score: 204.8 bits;  conditional E-value: 1.1e-63
                   EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEE CS
  Peripla_BP_6   2 ikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvig 98 
                   iki+ +++ +Gp+a +g + + ga  a+++iNa+GG+nG k+  ve+Dda dp++a+++a++ ++ dg+++++g l+s+ ++ +++++++ gv++i+
    EHT99016.1  26 IKIAIVGAATGPVAQYGDMEFTGAAQAIKDINAKGGVNGDKLVGVEYDDACDPKQAVAVANKVIN-DGIKYVIGHLCSSSTQPASDIYNDEGVLMIT 121
                   9****************************************************************.******************************* PP

                   SS-HHCC...TTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-S CS
  Peripla_BP_6  99 pagltge...kcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagad 192
                   pa++++e    ++  v ++++ +s+q+ ++++y+++  + k++a+v +  ++g+ +++++++ +ka+Gg+vv  e +++g+ dfs++++++k++++d
    EHT99016.1 122 PAATAPEltaRGYADVMRTTGLDSDQGPTAANYILDVIKPKRIAVVHDKQQYGQGLAESVQKTLKAKGGNVVMFEGITAGDKDFSTLIARLKKENVD 218
                   **9998644477888********************************************************************************** PP

                   EEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC.-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTG.GC-.-HHHHHHHHHH CS
  Peripla_BP_6 193 avllagtgadlaallkaaaeaGldakrillvsws.gseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaaygga.ppp.sqfaaggyiaa 286
                   +v+ +g+ + l ++l++a++aGl+a+   ++++  +++++l  ++g+a eg++++ p  +d + p+++a+v+a++a    + ++p   f + +y+a+
    EHT99016.1 219 FVYYGGYYPELGQILRQAKAAGLKAG---FMGPEgVGNASLSNIAGDASEGLYVTLPKRYD-QLPQNKAIVDAIKANSASNrKDPtGPFVWTTYAAI 311
                   ************************96...45555499********************9988.79**********98875532445267999****** PP

                   HHHHHHHHCCTHCCHHHHHHHHHHS-.BECCCTCCBEECTTSB CS
  Peripla_BP_6 287 dlllealkaagsltreavraaleslg.fdgllgplkftaedhq 328
                   + l+ ++++++s +++a+++ l++   + +++g+l+++++   
    EHT99016.1 312 QSLVTGMERSKSDEPDAIAKNLKTGApVPTVMGDLSWDQKGDL 354
                   ************************888*********9977655 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   4.4e-27   1.1e-23       6     353 ..      49     367 ..      45     368 .. 0.85

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 4.4e-27
                   HHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS-- CS
  ANF_receptor   6 mklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkgkvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvps 102
                   +  A+++in+++++ ++ kl     d++cd+++a+++a++ +++ ++ viG  +ss++ +++ + n   + +i++++t+pel+ +  y  ++rt+  
    EHT99016.1  49 AAQAIKDINAKGGVNGD-KLVGVEYDDACDPKQAVAVANKVINDGIKYVIGHLCSSSTQPASDIYNDEGVLMITPAATAPELTAR-GYADVMRTTGL 143
                   568********888876.887777999999*************77************************************9995.56889999999 PP

                   CHHHHHHHHH.HHHHTT--EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEESTCHHHCHHHHHHHHHHTT.T--EEEEEE-HHHHHHHHHHHH CS
  ANF_receptor 103 dtsqaqAivd.ilkhfgWkkvaliysdddygesglqaleeeleergicvalkekipessnddevvrkllkeiks.karvivlfcssedarellkaar 197
                   d+ q+   ++ il   + k++a++++++ yg ++++++++ l+++g +v++ e i+     d++++ l  ++k+ + + ++   + +++ ++l++a+
    EHT99016.1 144 DSDQGPTAANyILDVIKPKRIAVVHDKQQYGQGLAESVQKTLKAKGGNVVMFEGIT---AGDKDFSTLIARLKKeNVDFVYYGGYYPELGQILRQAK 237
                   999997655527779*****************************************...555555555555556599******************** PP

                   HTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-EEEEE.....--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHHH CS
  ANF_receptor 198 rlgltgeeyvwiasdawtsslvldkpeltgleaaegvlgfrl.....kdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVyllaeA 289
                    +gl  +   +++ +++++++ ++       + a   l+++l     + p+++   + +         k+n+ +  k +  ++++++Y a+  l+ +
    EHT99016.1 238 AAGLKAG---FMGPEGVGNASLSNIAG----D-ASEGLYVTLpkrydQLPQNKAIVDAI---------KANSASNRKDPTGPFVWTTYAAIQSLVTG 317
                   *****95...**999999999888553....3.45566777756555666666666666.........7888888899999**************** PP

                   HHHHHCHHSSSHCCB-HHHHCCHHHHHHHHHHHT-EEE.ETTSCEEB-TTSBBE.-EEEEEEEECT CS
  ANF_receptor 290 lnkllrkkkpgralscntlkpweggqkllrylrnvnfe.GltGdvkfdengdrv.ptydilnlqgs 353
                   +++ +                 ++ +++ ++l++      ++Gd++ d++gd++ + + +++++++
    EHT99016.1 318 MERSK----------------SDEPDAIAKNLKTGAPVpTVMGDLSWDQKGDLKgFEFGVFKWHKD 367
                   ****9................566777777777766444899999999999999999999999876 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   4.7e-24   1.2e-20       1     342 [.      26     369 ..      26     374 .] 0.88

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4.7e-24
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfY 97 
                   ik+ ++   +G +a        +a  ai++ina+gGv+g k+  v +d a d+++  + a+k+i+ d+++ v+G   S+s +   ++++++  l++ 
    EHT99016.1  26 IKIAIVGAATGPVAQYGDMEFTGAAQAIKDINAKGGVNGDKLVGVEYDDACDPKQAVAVANKVIN-DGIKYVIGHLCSSSTQPASDIYNDEGVLMIT 121
                   89*************************************************************98.******************************* PP

  Peripla_BP_5  98 pvqYEGeEssk...nviYtGaapnqqaipavdyllselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakpd 191
                   p     e + +   +v+ t     +q   a++y+l+    kr+++v     y +  ++ ++++lkakgg+vv+ e ++ g++d+++++a++kk + d
    EHT99016.1 122 PAATAPELTARgyaDVMRTTGLDSDQGPTAANYILDVIKPKRIAVVHDKQQYGQGLAESVQKTLKAKGGNVVMFEGITAGDKDFSTLIARLKKENVD 218
                   *987665544333389*9999999************************************************************************* PP

  Peripla_BP_5 192 vvlstinGdsnvafykelkeagikaekipvvslsvaeeelaaidaealvGhlaawn.Yfqsvdtpenkafvakfkarvgedr..vtndpmeaayiqv 285
                   +v+      +  ++ ++ k+ag+ka  +      v+++ l++i  +a +G + + +  +   + p+nka+v++ ka   ++r   t   + ++y ++
    EHT99016.1 219 FVYYGGYYPELGQILRQAKAAGLKAGFMG--PEGVGNASLSNIAGDASEGLYVTLPkRYD--QLPQNKAIVDAIKANSASNRkdPTGPFVWTTYAAI 311
                   ***98888888999999999999998764..5689****************998762233..4699*********99876554377778889***** PP

  Peripla_BP_5 286 klwaqAvekagstdvekvreal.lgqelkapeGevkidpenhhlsktvrigkikadGq 342
                   + ++  +e+ +s++++++ ++l +g  +++  G ++ d++         + k+++dG+
    EHT99016.1 312 QSLVTGMERSKSDEPDAIAKNLkTGAPVPTVMGDLSWDQKGDLKGFEFGVFKWHKDGS 369
                   ******************9988346778888888887776655555555556666665 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.9   2.5e-06    0.0065      13     133 ..      46     199 ..      37     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
                   HHHHHHHHHHHHHHTTCEEEEE....ECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEE.................... CS
  Peripla_BP_4  13 fsaaregleeaakelgaevtvv....gdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVva.................... 85 
                   f+ a +++++  ++ g++++      +d+  d ++ va+ +++i+ g + +i + ++s   +pa +  +++G+ +++                    
    EHT99016.1  46 FTGAAQAIKDINAKGGVNGDKLvgveYDDACDPKQAVAVANKVINDGIKYVIGHLCSS-STQPASDIYNDEGVLMITpaatapeltargyadvmrtt 141
                   4458889999999999988887899999999*************************95.999***************99999999999999988888 PP

                   .ESTTGCTTT-CEE............EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCC CS
  Peripla_BP_4  86 .fdsddapsgerla............yvgfdneaaGelqaeylaeklggkkgkvvilaGsp 133
                     dsd+ p++   a             v  d +++G+ +ae + + l++k g+vv+++G  
    EHT99016.1 142 gLDSDQGPTA---AnyildvikpkriAVVHDKQQYGQGLAESVQKTLKAKGGNVVMFEGIT 199
                   8888833333...2335889999999999****************************7753 PP

>> Bmp  ABC transporter substrate-binding protein PnrA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.025        64     120     198 ..      20     107 ..       3     120 .. 0.59
   2 ?    7.7   0.0    0.0006       1.5      12      69 ..     167     225 ..     164     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.025
                 HHHHHCTTTTEECSS-SCCCHHCHHHH...HHHHHHH-TT-EEEEEE.....-SSSS-HHHHHHHHHHHHHCT--EEEE.E-GGGHHH CS
         Bmp 120 AlmsktnkigfvgGveipvvksfingF...eaGikyvnpdievvvkv.....agtfsDakkgkslAsslykegvdvifp.aagkagkg 198
                 A+m+k  ki  vg+  +pv +   + F   +  ik+ n +  v+  +      +   D+k + ++A++ +++g++ + +  +  + ++
  EHT99016.1  20 AAMAKDIKIAIVGAATGPVAQYGDMEFtgaAQAIKDINAKGGVNGDKlvgveYDDACDPKQAVAVANKVINDGIKYVIGhLCSSSTQP 107
                 5566666666666666666666555551112334444544444432210000355678999999999999999995544266655555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0006
                 TTTSC.HHHHHHHHHHHHHHHCTTEEEEEEEEC.GGGHHHHHHHHHHCTT-SEEEEESC CS
         Bmp  12 idDks.fnessyeGirrlkkeqnieliskesslltdedyiadlknlkeegsdlivatgf 69 
                 ++Dk  + + + e++++  k ++ +++  e +++ d+d  +++  lk+e++d+++  g+
  EHT99016.1 167 VHDKQqYGQGLAESVQKTLKAKGGNVVMFEGITAGDKDFSTLIARLKKENVDFVYYGGY 225
                 666642778899*******************************************9887 PP

>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00048       1.2     183     248 ..      65     140 ..      20     144 .. 0.76
   2 ?    1.8   0.0      0.05   1.3e+02     168     204 ..     186     222 ..     146     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00048
                 S............HHHHHHHHHHHHHTT-SEEEEET.TS-THHHHHHHHHHT-EEEEE-STSSSTSTTSTTSHHHHHHH CS
                 x............xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 183 e............aaqiaalieeikeagvkaifvep.laspklaetlaeeagvkvatlysldslgdegsaetYidmmra 248
                 +            ++q  a+++++ ++g+k+++    ++s++ a ++ ++ gv +  + +  +  +e +a  Y d+mr+
  EHT99016.1  65 DklvgveyddacdPKQAVAVANKVINDGIKYVIGHLcSSSTQPASDIYNDEGVLM--ITP-AATAPELTARGYADVMRT 140
                 1444444448899*********************9988899***********865..444.33233334457*****97 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.05
                 HHTT-EEEEEESSSSSHHHHHHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 168 rayglevagiagisteaaqiaalieeikeagvkaifv 204
                 +a g +v+ + gi++  ++ + li ++k+++v  +++
  EHT99016.1 186 KAKGGNVVMFEGITAGDKDFSTLIARLKKENVDFVYY 222
                 3444455545566666777777777777777777765 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.33   8.4e+02      58      88 ..      15      45 ..      10      62 .. 0.77
   2 ?   10.1   0.0   0.00019      0.49      31      75 ..     152     196 ..     137     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.33
                HHHHHHHHCCT-CEEEEEEB-HHHHHHHHHH CS
   PGM_PMM_I 58 ealaaglaanGvevillgllptPavsfairk 88
                 a+ + ++a++++  ++g ++ P++++   +
  EHT99016.1 15 LAMSHAAMAKDIKIAIVGAATGPVAQYGDME 45
                5677888999999999999999999886555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
                 HHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE CS
   PGM_PMM_I  31 aeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg 75 
                 a+y+    k k+++v +D   +++ lae++ + l a+G +v++++
  EHT99016.1 152 ANYILDVIKPKRIAVVHDKQQYGQGLAESVQKTLKAKGGNVVMFE 196
                 45555555669*******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2735.10
//
Query:       EHT99017.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99017.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99017.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99017.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99017.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99017.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT99017.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99017.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99017.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT99017.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99017.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99017.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHT99017.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99017.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99017.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99017.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT99017.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99017.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2735.55
//
Query:       EHT99018.1  [L=128]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-46  154.6   0.3    1.1e-45  154.5   0.3    1.0  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
     0.0038   17.5   0.0     0.0043   17.3   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.013   15.4   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.084   13.3   0.0       0.12   12.9   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.3   2.4e-49   1.1e-45       1     127 [.       2     126 ..       2     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 2.4e-49
        PanZ   1 kltierltelsaqdkiDLakIypaqsaealeaalteegalfaarFNdRlLgAvkveledkeaelsdlcVRevTRrRGVgsyLleearrqaPevkswvla 99 
                 klti rlt+l++qd+iDL kI+p+ + ++le+al+e+++l++arFNdRlL+A ++e+ +  +++++l VR+vTRrRGVg+yLle++ +q+P+++ w++a
  EHT99018.1   2 KLTILRLTSLTQQDRIDLGKIWPERDLATLENALNENHRLYVARFNDRLLAALQLEIAGIHGKVHHLTVRDVTRRRGVGLYLLEDTMKQNPSLEDWWIA 100
                 89************************************************************************************************* PP

        PanZ 100 eedvkeldlavlqaflealgfaaesegy 127
                 + + +  d+ v +af++a+gf a+ +g+
  EHT99018.1 101 DDGSE--DQRVRAAFMQACGFRAQVDGW 126
                 *9976..788***************999 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.5e-07    0.0043      15      99 ..      22      99 ..       5     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.5e-07
                    HHHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1 15 pnedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99
                     +++++++  e+ + +e+ +l+va+++++l++ ++l +       ++ ++ l V+   r++G+G  Lle+ +++     ++  ++
      EHT99018.1 22 IWPERDLATLEN-ALNENHRLYVARFNDRLLAALQLEIAGI----HGKVHHLTVRDVTRRRGVGLYLLEDTMKQNP--SLEDWWI 99
                    566666666333.3557779*******************98....9*********************998776333..3344444 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   2.9e-06     0.013      23      78 ..      32      89 ..      20     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.9e-06
  Acetyltransf_10 23 rerieegealllvaeeggkivGviel.rdgs..hisllfVdpeyrgqGigkaLleavee 78
                     ++ + ++++ l+va  +++++ +++l   g   ++++l V++  r++G+g  Lle+  +
       EHT99018.1 32 ENAL-NENHRLYVARFNDRLLAALQLeIAGIhgKVHHLTVRDVTRRRGVGLYLLEDTMK 89
                     4444.8999***************774333366********************998655 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05      0.12       2      75 ..      38     120 ..      37     121 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                     TEEEEEEEETTEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHH..H........TTSEEEEEEEEE.THH......HHHHHHHHTTEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld..aeitrlaVdpeyrgkGiGraLle..a........aekgiileqlel.nae......kaikfYeklGFe 75 
                     +++++Va+ +++ +  + l++ +  +  ++l V+   r++G+G  Lle  +                  +  + +        ++f + +GF+
      EHT99018.1  38 NHRLYVARFNDRLLAALQLEIAGihGKVHHLTVRDVTRRRGVGLYLLEdtMkqnpsledW---------WIaD-DgsedqrVRAAFMQACGFR 120
                     789999999999998777777766555556*****************9633322222110.........1121.1112223345699999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1108.73
//
Query:       EHT99019.1  [L=285]
Description: RNA polymerase, sigma 32 (sigma H) factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-18   63.8   1.2    5.4e-16   57.8   0.3    2.5  2  Sigma70_r4       Sigma-70, region 4
    1.1e-16   60.3   0.0    2.1e-16   59.5   0.0    1.5  1  Sigma70_r2       Sigma-70 region 2
    0.00057   19.8   0.1     0.0015   18.5   0.1    1.7  1  Sigma70_r1_2     Sigma-70 factor, region 1.2
     0.0011   19.2   0.3       0.51   10.7   0.1    2.5  2  KORA             TrfB plasmid transcriptional repressor
     0.0013   18.5   0.0      0.064   13.1   0.0    2.8  2  HTH_10           HTH DNA binding domain
     0.0044   16.8   0.5       0.17   11.7   0.1    2.6  2  HTH_AsnC-type    AsnC-type helix-turn-helix domain
     0.0091   15.8   0.7        7.4    6.5   0.1    3.1  3  IF2_N            Translation initiation factor IF-2, N-termin
  ------ inclusion threshold ------
      0.023   14.2   0.0        1.1    8.9   0.0    2.5  2  GerE             Bacterial regulatory proteins, luxR family
      0.032   14.2   0.1        0.5   10.4   0.0    2.5  2  UCR_14kD         Ubiquinol-cytochrome C reductase complex 14k
       0.04   14.0   0.1        0.3   11.2   0.0    2.2  2  HTH_3            Helix-turn-helix
       0.04   14.0   1.4        9.2    6.4   0.1    2.6  2  Sigma70_r3       Sigma-70 region 3
      0.045   13.6   2.0       0.78    9.6   0.1    2.9  3  HTH_25           Helix-turn-helix domain
      0.061   13.0   0.5       0.75    9.5   0.0    2.4  2  GntR             Bacterial regulatory proteins, gntR family
      0.089   12.9   2.3         17    5.5   0.2    3.2  2  ENT              ENT domain
       0.12   12.2   0.1       0.24   11.2   0.1    1.5  1  DUF5412          Family of unknown function (DUF5412)
       0.14   11.9   0.4       0.74    9.6   0.1    2.2  2  HTH_DeoR         DeoR-like helix-turn-helix domain
       0.15   12.4   0.4        8.6    6.8   0.1    2.6  2  HTH_31           Helix-turn-helix domain
       0.15   11.9   0.0       0.58   10.0   0.0    1.9  2  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.029        29      24      43 ..     155     174 ..     144     177 .. 0.88
   2 !   57.8   0.3   5.4e-19   5.4e-16       1      49 [.     229     280 ..     229     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.029
                 HHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4  24 eEIgerlgiSrerVrqiekr 43 
                 e ++++lg+S   Vr  e+r
  EHT99019.1 155 EMVARELGVSSKDVREMESR 174
                 669************99987 PP

  == domain 2  score: 57.8 bits;  conditional E-value: 5.4e-19
                 HHHHS-HHHHHHHHHHH...TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf...geglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 a++ L+er +++++ r+   + + Tl+E+++++g+S erVrq+ek+A++kLR
  EHT99019.1 229 AMEGLDERSQHIIRARWldeDNKTTLQELADQYGVSAERVRQLEKNAMKKLR 280
                 799************************************************9 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.1e-19   2.1e-16       1      70 [.      53     122 ..      53     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.1e-19
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 l+ ++l++v+++ar++ g g+   Dl+Qe++++l++av+rf+pe gv++ ++++ +++ ++  ++ +++r
  EHT99019.1  53 LILSHLRFVVHIARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR 122
                 6789***************************************************************998 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.5e-06    0.0015       4      27 ..      17      40 ..      16      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-06
                  HHHHHHHHHSX--THHHHHHHHHH CS
  Sigma70_r1_2  4 rlYLrEIGriPLLtaeEEveLAkr 27
                  + Y r  +  P+L+aeEE++LA+r
    EHT99019.1 17 ESYVRAANTWPMLSAEEEKALAER 40
                  5688888899*************9 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.014        14      36      57 ..     156     177 ..     150     187 .. 0.85
   2 !   10.7   0.1   0.00051      0.51       9      58 ..     226     278 ..     220     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.014
        KORA  36 dvatelgltkqavsqavkrvwa 57 
                  va+elg++ + v +++ r  a
  EHT99019.1 156 MVARELGVSSKDVREMESRMAA 177
                 689**************99755 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00051
        KORA   9 iikgleelaeqtveiargvLVegkkqa...dvatelgltkqavsqavkrvwaa 58 
                 +  ++e l e+   i+r    ++ +++   ++a++ g++ ++v q++k++++ 
  EHT99019.1 226 LTYAMEGLDERSQHIIRARWLDEDNKTtlqELADQYGVSAERVRQLEKNAMKK 278
                 55689999999999999776665555323379*****************9975 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   1.8e+02      26      42 ..     154     170 ..     145     174 .. 0.82
   2 !   13.1   0.0   6.4e-05     0.064      19      51 ..     247     279 ..     245     280 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
      HTH_10  26 lkeLAkelGIskstlse 42 
                 ++ +A elG+s  ++ e
  EHT99019.1 154 VEMVARELGVSSKDVRE 170
                 6779*******998766 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.4e-05
      HTH_10  19 dyPRrvtlkeLAkelGIskstlsehLrkaeskl 51 
                 d++ ++tl+eLA++ G+s+  + +  ++a++kl
  EHT99019.1 247 DEDNKTTLQELADQYGVSAERVRQLEKNAMKKL 279
                 788899******************999999998 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.13   1.3e+02      23      36 ..     157     170 ..     154     170 .. 0.86
   2 !   11.7   0.1   0.00017      0.17      12      35 ..     246     269 ..     233     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.13
  HTH_AsnC-type  23 LAervGlSestvlr 36 
                    +A+++G+S   v++
     EHT99019.1 157 VARELGVSSKDVRE 170
                    7*******999985 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00017
  HTH_AsnC-type  12 LqedaRisyaeLAervGlSestvl 35 
                    L ed +++ +eLA++ G+S+++v+
     EHT99019.1 246 LDEDNKTTLQELADQYGVSAERVR 269
                    889*******************98 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         5     5e+03      14      31 ..      72      87 ..      71      89 .. 0.77
   2 !    6.4   0.0    0.0081         8       8      20 ..     156     168 ..     153     171 .. 0.86
   3 !    6.5   0.1    0.0075       7.4       2      20 ..     250     268 ..     249     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5
       IF2_N 14 gvkskevikkLfkelGie 31
                g++ +++i++  +  G +
  EHT99019.1 72 GLPQADLIQEG-N-IGLM 87
                78899999987.6.7777 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0081
       IF2_N   8 eLAkeLgvkskev 20 
                  +A+eLgv+sk+v
  EHT99019.1 156 MVARELGVSSKDV 168
                 58**********8 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0075
       IF2_N   2 skirVyeLAkeLgvkskev 20 
                 +k++ +eLA++ gv++++v
  EHT99019.1 250 NKTTLQELADQYGVSAERV 268
                 599************9987 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.11   1.1e+02      20      35 ..     154     169 ..     143     177 .. 0.83
   2 ?    8.9   0.0    0.0011       1.1      20      46 ..     254     280 ..     244     282 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
                 HHHHHHHHTS-HHHHH CS
        GerE  20 nkeIAeelniSekTVk 35 
                 ++++A+el++S k V+
  EHT99019.1 154 VEMVARELGVSSKDVR 169
                 6899********9987 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0011
                 HHHHHHHHTS-HHHHHHHHHHHHHHHT CS
        GerE  20 nkeIAeelniSekTVkvhksnimkKLn 46 
                  +e A+++++S++ V+   +n+mkKL+
  EHT99019.1 254 LQELADQYGVSAERVRQLEKNAMKKLR 280
                 5799*********************97 PP

>> UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0005       0.5      15      49 ..      62      97 ..      50     100 .. 0.82
   2 ?    0.7   0.1       0.5     5e+02      48      74 ..     114     140 ..     100     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0005
    UCR_14kD 15 anaag.yrklGLrydDllseenedvqeALrrLpeee 49
                ++ a  y  +GL   Dl++e n  + +A+rr ++e+
  EHT99019.1 62 VHIARnYSGYGLPQADLIQEGNIGLMKAVRRFNPEV 97
                444444999***********************9986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
    UCR_14kD  48 eeaydRvfRlkrAlqlslkhklLPkee 74 
                 +e+  R++R+ + +++++++kl  +  
  EHT99019.1 114 HEYVLRNWRIVKVATTKAQRKLFFNLR 140
                 57788*****99999999988765555 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.3   1.3e+03      13      22 ..     155     164 ..     150     173 .. 0.73
   2 ?   11.2   0.0   0.00031       0.3       8      32 ..     250     274 ..     245     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
                 HHHHHHHTSS CS
       HTH_3  13 eeLAeklGvs 22 
                 e++A++lGvs
  EHT99019.1 155 EMVARELGVS 164
                 5677778777 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00031
                 TTHHHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3   8 lglsqeeLAeklGvsrstisriEnG 32 
                 ++ +++eLA+  Gvs   ++++E++
  EHT99019.1 250 NKTTLQELADQYGVSAERVRQLEKN 274
                 6889*******************98 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.014        14      24      40 ..     155     171 ..     153     194 .. 0.75
   2 ?    6.4   0.1    0.0093       9.2      22      44 ..     253     275 ..     247     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.014
                 HHHHHHHTXXHHHHHHH CS
  Sigma70_r3  24 eEiAeeLglseekVrev 40 
                 e +A eLg+s ++Vre+
  EHT99019.1 155 EMVARELGVSSKDVREM 171
                 679*************8 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0093
                 XHHHHHHHHTXXHHHHHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrevleaa 44 
                 t +E+A++ g+s e+Vr++ + a
  EHT99019.1 253 TLQELADQYGVSAERVRQLEKNA 275
                 789**************986665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.22   2.2e+02      13      34 ..     154     175 ..     150     178 .. 0.87
   2 ?   -1.5   0.0       2.4   2.4e+03      30      41 ..     213     224 ..     211     230 .. 0.76
   3 ?    9.6   0.1   0.00078      0.78       9      38 ..     250     279 ..     248     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.22
                 HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  13 leevaketkIrkdylealEedd 34 
                 +e va+e+ ++ + ++++E+ +
  EHT99019.1 154 VEMVARELGVSSKDVREMESRM 175
                 799**************99865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.4
                 HHCT--TTSS-H CS
      HTH_25  30 lEeddfdalpep 41 
                 +Eed++++  ++
  EHT99019.1 213 IEEDNWESHAAD 224
                 9*****998755 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00078
                 TT--HHHHHHHSS--HHHHHHHHCT--TTS CS
      HTH_25   9 rglsleevaketkIrkdylealEeddfdal 38 
                  + +l+e+a++  ++++ +++lE++ +++l
  EHT99019.1 250 NKTTLQELADQYGVSAERVRQLEKNAMKKL 279
                 6789*********************99988 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.37   3.7e+02      28      49 ..     155     176 ..     153     180 .. 0.77
   2 ?    9.5   0.0   0.00075      0.75      26      43 ..     253     270 ..     237     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.37
                 HHHHHHHTS-HHHHHHHHHHHH CS
        GntR  28 reLaaefgVsrttvReALrrLe 49 
                 + +a e+gVs   vRe  +r +
  EHT99019.1 155 EMVARELGVSSKDVREMESRMA 176
                 66799**********9655555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00075
                 -HHHHHHHHTS-HHHHHH CS
        GntR  26 sereLaaefgVsrttvRe 43 
                 + +eLa+++gVs+  vR+
  EHT99019.1 253 TLQELADQYGVSAERVRQ 270
                 789**********99996 PP

>> ENT  ENT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.017        17      21      56 ..      43     177 ..      37     185 .. 0.50
   2 ?    4.0   0.1     0.054        53      25      54 ..     246     275 ..     240     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.017
         ENT  21 aqgdLseekkkllteLr.................................................................................. 37 
                  qgdL   k+ +l++Lr                                                                                  
  EHT99019.1  43 YQGDLDAAKTLILSHLRfvvhiarnysgyglpqadliqegniglmkavrrfnpevgvrlvsfavhwikaeiheyvlrnwrivkvattkaqrklffnlrk 141
                 578888888888888884444444444444444444444444444444444444444444444444444444444444444444444444444444445 PP

         ENT  38 .................keLsIsterHraelrrvks 56 
                                  +eL +s+++ r++ +r++ 
  EHT99019.1 142 tkqrlgwfnqdevemvaRELGVSSKDVREMESRMAA 177
                 555555555555555556666666666666666555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.054
         ENT  25 LseekkkllteLrkeLsIsterHraelrrv 54 
                 L e+ k+ l+eL     +s er r++ +++
  EHT99019.1 246 LDEDNKTTLQELADQYGVSAERVRQLEKNA 275
                 77899999**************99998877 PP

>> DUF5412  Family of unknown function (DUF5412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00025      0.24      69     109 ..     123     165 ..     110     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
     DUF5412  69 lvnk.ktkkkkniYwnyreedakieWldektvvIngkkLnv.k 109
                 +v++ +tk ++++++n r+++ ++ W +++ v +  ++L v  
  EHT99019.1 123 IVKVaTTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVsS 165
                 4555488999************************999999944 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.5   1.5e+03      17      32 ..     154     169 ..     152     170 .. 0.86
   2 ?    9.6   0.1   0.00075      0.74       7      32 ..     244     269 ..     236     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.5
    HTH_DeoR  17 veelvellgvSeaTiR 32 
                 ve ++ +lgvS + +R
  EHT99019.1 154 VEMVARELGVSSKDVR 169
                 788999*****98887 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00075
    HTH_DeoR   7 ellkqqgklsveelvellgvSeaTiR 32 
                  +l ++ k +++el++++gvS + +R
  EHT99019.1 244 RWLDEDNKTTLQELADQYGVSAERVR 269
                 58999****************99888 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.13   1.3e+02      18      36 ..     155     173 ..     139     179 .. 0.88
   2 ?    6.8   0.1    0.0086       8.6      16      36 ..     253     273 ..     241     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.13
      HTH_31  18 eevAerlgvsestlsrlEq 36 
                 e vA+ lgvs   ++ +E+
  EHT99019.1 155 EMVARELGVSSKDVREMES 173
                 789*******999999886 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0086
      HTH_31  16 sqeevAerlgvsestlsrlEq 36 
                 +++e+A++ gvs+ ++++lE 
  EHT99019.1 253 TLQELADQYGVSAERVRQLEK 273
                 89*****************97 PP

>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00058      0.58      10      51 ..     130     171 ..     122     173 .. 0.86
   2 ?   -1.9   0.0       2.8   2.8e+03      31      49 ..     251     269 ..     222     272 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00058
                      -GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHH CS
  2Fe-2S_thioredx  10 ekrsaliplLklvQeeegwlpeealeevaellgvppaevyev 51 
                      + +++l   L++++++ gw +++ +e+va++lgv+  +v+e+
       EHT99019.1 130 KAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREM 171
                      566677778999999***********************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
                      HHHHHHHHHHHTS-HHHHH CS
  2Fe-2S_thioredx  31 eealeevaellgvppaevy 49 
                      +++l+e+a++ gv++ +v+
       EHT99019.1 251 KTTLQELADQYGVSAERVR 269
                      3467788888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2282.74
//
Query:       EHT99020.1  [L=327]
Description: putative membrane component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   61.0   0.1      2e-16   60.4   0.1    1.3  1  FtsX_ECD  FtsX extracellular domain
    3.8e-05   24.1   6.2    3.8e-05   24.1   6.2    3.0  3  FtsX      FtsX-like permease family
      0.005   16.7   2.4       0.87    9.5   0.2    2.8  2  DUF1418   Protein of unknown function (DUF1418)
  ------ inclusion threshold ------
      0.038   14.2   2.6        1.9    8.8   0.3    3.3  3  DUF1294   Protein of unknown function (DUF1294)
      0.049   14.1   0.1      0.099   13.1   0.1    1.5  1  SCIMP     SCIMP protein


Domain annotation for each model (and alignments):
>> FtsX_ECD  FtsX extracellular domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   5.5e-20     2e-16       2      96 .]      85     179 ..      84     179 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 5.5e-20
    FtsX_ECD   2 evsvflkddateeqiealeeklealpgVksvtfvskeealeefkeqlgednsellegltedeNpLpdsfevklkdp....ekleevaeelkklpgVeeV 96 
                 +++v+l +++++  +e++ ++l++ +gV++v++ ++eeal+ef++  g  +  ++++   ++NpLp+++++++k      + ++++ ++++k++gV+eV
  EHT99020.1  85 QLTVYLSKTLDDTAAENVTAQLKQVEGVDHVNYLTREEALNEFRNWSG--FGGAMDM--LEQNPLPAVVIITPKLNfqnsDTMQTLRDRVAKVQGVDEV 179
                 89**********************************************..8999999..556***********9989999******************9 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.21   7.4e+02      66      90 ..      47      71 ..      41      81 .. 0.77
   2 ?   -0.3   2.0      0.42   1.5e+03      38      52 ..     202     216 ..     184     225 .. 0.50
   3 !   24.1   6.2   1.1e-08   3.8e-05       2      92 ..     228     317 ..     227     321 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
        FtsX 66 litvliiivlllllallagllsisk 90
                l t+l+++v+++ l+l ++ + ++k
  EHT99020.1 47 LATLLTVMVIAISLTLPSVCYMVWK 71
                5577788888888888887777776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.42
        FtsX  38 glgllaaqllsdvll 52 
                  +g+l++ +++ v++
  EHT99020.1 202 MIGILMIVAVFLVIG 216
                 222222222222222 PP

  == domain 3  score: 24.1 bits;  conditional E-value: 1.1e-08
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskil 92 
                   i + + +G++++ +l+ +l+ ++l+++ ++v++l+l+ ++   l++v+ ++ + + +++s+ ++++ ++++lll+ a++ g+++++ ++
  EHT99020.1 228 DTINVQKLIGATDGFILRPFLYGGALLGFSGAVLSLILSEVLVLRLQSVVAQVSSVFGTTFSLEGFSWDEALLLLLIAAII-GWIAAWLAT 317
                 57999********************************************9999888**************99888888777.599999986 PP

>> DUF1418  Protein of unknown function (DUF1418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2   0.00024      0.87      44      75 ..      48      80 ..      38      94 .. 0.77
   2 !    5.9   0.2    0.0032        11      13      41 ..     199     227 ..     193     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
     DUF1418 44 aaiv.miflGvllllPaavalvwrvaqalapll 75
                a+++ ++ + + l lP++ ++vw+ +++ a++ 
  EHT99020.1 48 ATLLtVMVIAISLTLPSVCYMVWKNVSQAASQW 80
                44431334689***************9998875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0032
     DUF1418  13 ilevlGliLLvlayLsvndylsLPgplss 41 
                 i+ ++G++++v+++L + +++ L  +  +
  EHT99020.1 199 IASMIGILMIVAVFLVIGNSVRLSIFARR 227
                 6789*****************99766555 PP

>> DUF1294  Protein of unknown function (DUF1294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.43   1.5e+03      18      33 ..      41      56 ..      30      59 .. 0.83
   2 ?    3.0   0.0     0.033   1.2e+02      20      44 ..     179     203 ..     168     205 .. 0.83
   3 ?    8.8   0.3   0.00054       1.9      27      43 ..     301     317 ..     296     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.43
     DUF1294 18 kkwRipEktLlllall 33
                + wR p +tLl++ ++
  EHT99020.1 41 DMWRQPLATLLTVMVI 56
                569*******998765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.033
     DUF1294  20 wRipEktLlllallgGslGallgmr 44 
                  R   + +  la+l G +G +++m 
  EHT99020.1 179 VRMDDSWFARLAALTGLVGQIASMI 203
                 4888899999***********9995 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00054
     DUF1294  27 LlllallgGslGallgm 43 
                 Lll+a++ G+++a+l+ 
  EHT99020.1 301 LLLIAAIIGWIAAWLAT 317
                 77999*********995 PP

>> SCIMP  SCIMP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.8e-05     0.099       2      64 ..      41     105 ..      40     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
       SCIMP   2 swWrdnfWiilavaiivvsvvlglilycvcrrllrqGkkweiakslkq..kerdeekmyenvlnq 64 
                 ++Wr+ +  +l+v +i +s++l  + y+v +   +   +w  a  l    ++  +++  env+ q
  EHT99020.1  41 DMWRQPLATLLTVMVIAISLTLPSVCYMVWKNVSQAASQWYPAPQLTVylSKTLDDTAAENVTAQ 105
                 68******************************999999998777665433555667777888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2343.70
//
Query:       EHT99021.1  [L=222]
Description: putative ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-37  126.9   0.0    9.3e-37  126.6   0.0    1.1  1  ABC_tran     ABC transporter
      4e-06   26.9   0.3      0.011   15.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    6.2e-05   22.7   0.0    0.00016   21.3   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
    0.00038   20.4   0.0    0.00071   19.5   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
    0.00089   19.7   0.0     0.0013   19.1   0.0    1.4  1  AAA_16       AAA ATPase domain
     0.0045   17.5   0.0     0.0072   16.9   0.0    1.2  1  AAA_23       AAA domain
  ------ inclusion threshold ------
      0.015   14.9   0.1       0.36   10.4   0.0    2.3  2  AAA_25       AAA domain
      0.045   14.0   0.3       0.17   12.2   0.1    1.9  2  AAA_22       AAA domain
      0.052   13.6   0.0       0.13   12.3   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
      0.057   13.6   0.2       0.16   12.1   0.2    1.9  1  AAA_33       AAA domain
      0.091   12.5   0.0       0.18   11.5   0.0    1.4  1  AAA_30       AAA domain
       0.12   12.3   0.0       0.26   11.2   0.0    1.5  1  NTPase_1     NTPase
       0.22   11.0   0.0        2.1    7.8   0.0    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   6.7e-40   9.3e-37       1     136 [.      18     165 ..      18     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 6.7e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 l+ v+++l++ge+  ++G++GaGKStLlkl++g ++p +G+i++ g+d+++    e ++lr++ig+++q+++l  + +v++n             + ++
  EHT99021.1  18 LQGVDFNLRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGQIWFSGHDISRlrnSEVPFLRRQIGMIFQDHHLLMDRSVYDNvaipliisgasgeDIRR 116
                 689*************************************************9999*****************99999*************99988888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++al+k+gl +++++       +LSgG++qrv +ara+++kp +ll+DEpt
  EHT99021.1 117 RVSAALDKVGLLDKAKSFP----IQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
                 9************666666....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00041      0.57       2      22 ..      31      51 ..      30      97 .. 0.80
   2 !   15.6   0.0     8e-06     0.011     256     302 ..     154     200 ..     110     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00041
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                ++l+G  g+GKS+LL+++ ++
  EHT99021.1 31 AFLTGHSGAGKSTLLKLICGI 51
                689**************9443 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8e-06
      AAA_21 256 kkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                  k+++ll DEp  +L+ +l + +l+l++e +r g+ v+++TH+  l+
  EHT99021.1 154 NKPAVLLADEPTGNLDEALSEDILRLFEEFNRVGVTVLMATHDVALI 200
                 4559***************************************8886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.2e-07   0.00016      13      39 ..      19      45 ..      15      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                +g ++++++ ++ +ltG+sG+GKSTll
  EHT99021.1 19 QGVDFNLRPGEMAFLTGHSGAGKSTLL 45
                56788889888***************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.1e-07   0.00071      88     123 ..      16      52 ..       6      64 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.1e-07
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  ++l+ +  +l+  ++++l G+SG+GKStL++ + + +
   EHT99021.1  16 QALQGVDFNLRPgEMAFLTGHSGAGKSTLLKLICGIE 52 
                  566777788887799***************9998754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.5e-07    0.0013      24      69 ..      27      76 ..      15     190 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.5e-07
      AAA_16 24 p.elvllsGesGvGKsslvrellralekd..ggiflrgkcdql..esaipy 69
                p e+ +l+G+sG GKs+l++ +   +e+   g i+++g+  +    s++p+
  EHT99021.1 27 PgEMAFLTGHSGAGKSTLLKLIC-GIERPsaGQIWFSGHDISRlrNSEVPF 76
                34899***************999.566664443334444444445555666 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.2e-06    0.0072      11      40 ..      19      49 ..      11      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.2e-06
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTildAik 40
                +++++++ +  +  +tG+ GaGK+T+l  i+
  EHT99021.1 19 QGVDFNLRPgEMAFLTGHSGAGKSTLLKLIC 49
                66677777735999**************999 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.36      31      50 ..      26      45 ..      16      51 .. 0.88
   2 ?    1.8   0.0      0.11   1.5e+02      83     139 ..     111     182 ..     104     192 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
      AAA_25 31 pagelallaGapgtGKttla 50
                + ge a l+G++g+GK+tl+
  EHT99021.1 26 RPGEMAFLTGHSGAGKSTLL 45
                5699**************97 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.11
      AAA_25  83 edelrrRlravgeal...............rddarllvldlagv.eslpLfakdrggtlltadvdaleaaiee 139
                  +++rrR++a++ ++                +++r+ +   a v ++  L+a++  g+l +a  +++ +  ee
  EHT99021.1 111 GEDIRRRVSAALDKVglldkaksfpiqlsgGEQQRVGIAR-AVVnKPAVLLADEPTGNLDEALSEDILRLFEE 182
                 45999******99998877777777766654444554444.34445555555555555544444445554444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00012      0.17       6      24 ..      29      47 ..      25      56 .. 0.89
   2 ?   -0.6   0.0       1.1   1.5e+03      89     115 ..     155     179 ..      94     199 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
      AAA_22  6 gilvvtGesGtGKTtllrr 24
                 + ++tG+sG+GK+tll+ 
  EHT99021.1 29 EMAFLTGHSGAGKSTLLKL 47
                6789************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
      AAA_22  89 ravielliiDEaqh.lrseealeeLrsl 115
                 +  +++l+ DE    l  e++ e++ +l
  EHT99021.1 155 K--PAVLLADEPTGnL-DEALSEDILRL 179
                 2..3466666644445.44444444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.6e-05      0.13       3      26 ..      32      56 ..      30      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.6e-05
                EEEESTTSSHHHHHHHHHTS.TEEE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.kaiv 26
                 + G++ +GKStL++ ++g  +  +
  EHT99021.1 32 FLTGHSGAGKSTLLKLICGIeRPSA 56
                579**************99434444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00011      0.16       2      20 ..      31      49 ..      30     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_33  2 vllvGlpGsGKstlaerll 20
                 +l G++G+GKstl++ ++
  EHT99021.1 31 AFLTGHSGAGKSTLLKLIC 49
                5789**********98765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.18      18      39 ..      28      49 ..      14      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      AAA_30 18 drvavltGpAGtGKttalkalr 39
                  +a+ltG  G+GK+t+lk + 
  EHT99021.1 28 GEMAFLTGHSGAGKSTLLKLIC 49
                45899*************9875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00019      0.26       3      20 ..      32      49 ..      30      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                EEE--TTSSHHHHHHHHH CS
    NTPase_1  3 fiTGppGvGKtTlvkkvl 20
                f+TG++G GK+Tl+k ++
  EHT99021.1 32 FLTGHSGAGKSTLLKLIC 49
                8*************9887 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0015       2.1      26     187 ..      30     184 ..      17     215 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTT..T..TTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersak..k..lrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120
                 + +++G+ G+GKs ll  i    G +  +  +  +  +++s+l   ++++    + ++ ++f+++      ++   ++   ++ +g s   i ++    
  EHT99021.1  30 MAFLTGHSGAGKSTLLKLI---CGIERPSagQiwFSGHDISRL---RNSEVPFLRRQIGMIFQDHHLL-MDRSVYDNVAIPLIISGASGEDIRRRVSAA 121
                 6678888888888888777...343222100100122222222...2223333333344433332222.222222233333333444444444444444 PP

                 HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                  +   ll +a+  + +LSgGe++ v +a       v++ ++ l De   +LDe+  + + +l++e +
  EHT99021.1 122 LDKVGLLDKAKSFPIQLSGGEQQRVGIARA----VVNKPAVLLADEPTGNLDEALSEDILRLFEEFN 184
                 444444444444444888888887776543....344445556688888888877777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1690.83
//
Query:       EHT99022.1  [L=569]
Description: signal recognition particle (SRP) receptor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-79  264.1   1.7    6.6e-79  264.1   1.7    1.7  2  SRP54            SRP54-type protein, GTPase domain
    4.6e-13   49.2   0.2    1.9e-12   47.2   0.2    2.1  1  SRP54_N          SRP54-type protein, helical bundle domain
      3e-08   33.2   0.1    5.3e-08   32.4   0.1    1.4  1  Zeta_toxin       Zeta toxin
    2.4e-05   24.1   1.4    5.1e-05   23.1   1.4    1.6  1  AAA_30           AAA domain
    3.4e-05   24.3   0.2    8.3e-05   23.0   0.2    1.7  1  AAA_17           AAA domain
    0.00019   21.6   0.1    0.00043   20.5   0.1    1.6  1  AAA_33           AAA domain
    0.00024   21.6   0.9    0.00042   20.9   0.1    1.8  2  ABC_tran         ABC transporter
    0.00026   21.3   0.1    0.00095   19.4   0.1    1.9  1  AAA_22           AAA domain
     0.0034   17.3   0.0     0.0079   16.1   0.0    1.6  1  APS_kinase       Adenylylsulphate kinase
      0.006   16.3   0.6      0.083   12.6   0.1    2.3  2  Thymidylate_kin  Thymidylate kinase
     0.0092   16.4   0.1      0.019   15.4   0.1    1.5  1  AAA              ATPase family associated with various cellul
     0.0094   16.0   0.0      0.017   15.2   0.0    1.4  1  AAA_14           AAA domain
  ------ inclusion threshold ------
       0.01   16.2   0.1       0.01   16.2   0.1    3.1  1  AAA_16           AAA ATPase domain
      0.011   15.8   0.5       0.13   12.3   0.5    2.5  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.025   14.5   0.2      0.043   13.7   0.2    1.3  1  AAA_31           AAA domain
      0.035   13.4   0.2       0.05   12.8   0.2    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.055   13.6   0.5       0.21   11.7   0.5    2.1  1  MMR_HSR1         50S ribosome-binding GTPase
      0.076   12.7   0.0       0.42   10.3   0.0    2.2  2  AAA_24           AAA domain
      0.089   12.5   0.0       0.15   11.8   0.0    1.3  1  VirE             Virulence-associated protein E
        0.2   11.5   1.4        1.6    8.6   0.3    2.2  2  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       8.8   7.9e+03      61      94 ..     198     231 ..     195     234 .. 0.81
   2 !  264.1   1.7   7.3e-82   6.6e-79       1     195 [.     365     565 ..     365     566 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.8
                 ESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--S CS
       SRP54  61 kkkeeadpaavakeavekakeekidvvlvDTaGr 94 
                 +++e+ad a +  e++ +    ++dvv v T G+
  EHT99022.1 198 AETEQADDAPLSDEELAALALGDADVVNVETVGH 231
                 4667778888889999999999999999999997 PP

  == domain 2  score: 264.1 bits;  conditional E-value: 7.3e-82
                 SEEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHH CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndk 99 
                 p vil+vG++G+GKTtt++KLa+++++egk+v+l+a DtfRaaAveQL++++++ ++pv++++++ad+a+v+++a+++ak++++dv++ DTaGrlqn++
  EHT99022.1 365 PFVILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDAIQAAKSRGVDVLIADTAGRLQNKS 463
                 579************************************************************************************************ PP

                 HHHHHHHHHHHHH......SSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHH CS
       SRP54 100 elmeelkkikkvv......kpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvs 192
                 +lmeelkki +v+      +p+ev+l+lda+tgq+a++qak F+eavg++g+ ltklDg+akgG ++s+a+++++Pi++igvGe i+dl++f++e++++
  EHT99022.1 464 HLMEELKKITRVMkkldeqAPHEVMLTLDASTGQNAISQAKLFHEAVGLSGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIDDLRPFKAEDFIE 562
                 *************************************************************************************************** PP

                 HHH CS
       SRP54 193 rll 195
                 +l+
  EHT99022.1 563 ALF 565
                 997 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.2   2.1e-15   1.9e-12       1      75 []     282     347 ..     280     347 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.1e-15
                 HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS-HHHHHHHHHHHHH CS
     SRP54_N   1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekklkpkqqvkkivkdeL 75 
                 Lg+++ s+++    ++kid++++ee    lee+Ll aDVgv++++++i ++ +  + +k+l+++++++ ++k e+
  EHT99022.1 282 LGSGFISLFR----GKKIDDDLFEE----LEEQLLIADVGVETTRRIITSLTQ-HADRKQLRDAEALYGLLKSEM 347
                 4555566665....699********....**********************88.88889************9997 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   5.9e-11   5.3e-08      10     119 ..     359     471 ..     351     477 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.9e-11
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdelerqgnvvrl.dpDdlRelhPeyeeilk..adpkkaseltqkdaselvekllqeaiengyniivegtlr 105
                 ++++++P +il++G  G GK++++ +l+++ +++g+ v l  +D++R+   e  ++    ++   ++++t +d+  +   ++q+a ++g+++++  t  
  EHT99022.1 359 NVEGKTPFVILMVGVNGVGKTTTIGKLARQYQAEGKSVMLaAGDTFRAAAVEQLQVWGqrNNIPVVAQHTGADSASVIFDAIQAAKSRGVDVLIADTAG 457
                 57889***************************66666666268******9776666553246678999*****************************99 PP

  Zeta_toxin 106 spdvvkklaealkk 119
                   ++ ++l+e+lkk
  EHT99022.1 458 RLQNKSHLMEELKK 471
                 99999999999987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.4   5.7e-08   5.1e-05      20     101 ..     367     462 ..     360     520 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5.7e-08
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa......eelgieastiakllkrlk...........grarlepg.tllivDEagmv 100
                 v +++G+ G GKtt++++l++ ++a+g++v+++A     A++++      +      ++i  + + ++           ++a+  +g ++li D ag +
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEqlqvwgQ-----RNNIPVVAQHTGadsasvifdaiQAAKS-RGvDVLIADTAGRL 459
                 67899**************************99977655555551213330.....3333322222223334455555432333.44488888888887 PP

      AAA_30 101 ..d 101
                    
  EHT99022.1 460 qnK 462
                 432 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2   9.3e-08   8.3e-05       1      96 [.     371     473 ..     371     500 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.3e-08
                 EE-TTSSHHHHHHHHHHHH....TEEEEEHHHHHHHHHHTT.TSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETTEEEESS CS
      AAA_17   1 lGgPGsGKgtqceklveky....gfthlsaGdllreeakrg.glakardemrklpleekkelqkeaaekiaeea..kkkgvlvdghprikeqagfldgl 92 
                 +G+ G+GK+t + kl+++y    +  +l aGd +r+ a ++ +   +r+++  + +    +    + ++i+ ++  + + ++ d+  r+++++ ++++l
  EHT99022.1 371 VGVNGVGKTTTIGKLARQYqaegKSVMLAAGDTFRAAAVEQlQVWGQRNNIPVVAQHTGADSASVIFDAIQAAKsrGVDVLIADTAGRLQNKSHLMEEL 469
                 79*****************88877899********9998885555677888777777777777777788877652233447889999999998888888 PP

                 HHHH CS
      AAA_17  93 pkev 96 
                 +k +
  EHT99022.1 470 KKIT 473
                 8644 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   4.8e-07   0.00043       1      78 [.     367     455 ..     367     494 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.8e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg.....tdqqskt.dytrvldrlyqilnelarkalsagrnvildat 78 
                 ++l+vG++G+GK+t + +l+++ +     + l + dt+r + ++      +++++    ++   +    +++ ++ a s+g +v++  t
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLARQYQaegksVMLAAGDTFRAAAVEqlqvwGQRNNIPvVAQHTGADSASVIFDAIQAAKSRGVDVLIADT 455
                 89*****************9888888895556667777775554444443333332222223344666888999999999999888666 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       9.1   8.2e+03      52      80 ..      38      67 ..      22     106 .. 0.66
   2 !   20.9   0.1   4.7e-07   0.00042      13      96 ..     367     483 ..     356     505 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9.1
                B-HHHCCHCEEEE-SS--S-TTSBHHHH.H CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
    ABC_tran 52 qeleslrkeigvlpqepqlfpeltvren.e 80
                +++  +r++ ++ +qe    pe +v+++ e
  EHT99022.1 38 EQEAPARSQAETAEQERGAAPENRVEQQqE 67
                445556666666677766666666666542 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 4.7e-07
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.....B-HHHCCHCEEEE-SS--S-TTSBHHHH.......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.....qeleslrkeigvlpqepqlfpeltvren.......................... 79 
                 ++ +vG nG GK+t +  la++++ +  ++ l  g+ ++       +    r++i v+ q++  ++ + + +                           
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAaGDTFRAaaveqLQVWGQRNNIPVVAQHTGADSASVIFDAiqaaksrgvdvliadtagrlqnkshl 465
                 5789********************98888855533333335553377777899********88888888888888888888888888888888777776 PP

                 .HHHTCHHHHHHHSTTGG CS
                 .xxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglke 96 
                  e+ ++i+++++kl+ + 
  EHT99022.1 466 mEELKKITRVMKKLDEQA 483
                 666666777777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.1e-06   0.00095       7     117 ..     367     474 ..     361     491 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.........erlsseellealeqalraravielli 96 
                 +++ +G  G+GKTt++ +l++q+         ++e  +v l+++ + +  + e l+ +g+   +          +++s  ++    qa+++r+v  +li
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLARQY---------QAEGKSVMLAAGDTFRAAAVEQLQVWGQ---RnnipvvaqhTGADSASVIFDAIQAAKSRGV-DVLI 452
                 57889******************.........6777777777777544444444444444...3334788777677888888777788888888.9*** PP

      AAA_22  97 iDEaqhlr.seealeeLrslln 117
                  D a +l  +  ++eeL+++  
  EHT99022.1 453 ADTAGRLQnKSHLMEELKKITR 474
                 *******665888888877755 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.8e-06    0.0079       2      49 ..     365     412 ..     364     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.8e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdL 49 
                 ++v+++ G+ g GK+t   +l+++ +++g+sv+l  Gd+ R    ++L
  EHT99022.1 365 PFVILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQL 412
                 789**************************************9877776 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   9.3e-05     0.083       3      29 ..     372     398 ..     371     408 .. 0.92
   2 ?    1.5   0.0      0.23   2.1e+02     134     181 ..     458     500 ..     448     503 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.3e-05
                      ESTTSSHHHHHHHHHHHHHHTTE.EEE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvl 29 
                      G++G+GKtt + +l++ +++eg++v+l
       EHT99022.1 372 GVNGVGKTTTIGKLARQYQAEGKSVML 398
                      9*********************99876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.23
                      SCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHHH CS
  Thymidylate_kin 134 Rlakrdeldeeeeeqldflrkvrerylelakederiliidasksieev 181
                      Rl+ +++      e+l++ ++v+++++e a   e +l++das   +++
       EHT99022.1 458 RLQNKSH----LMEELKKITRVMKKLDEQA-PHEVMLTLDASTGQNAI 500
                      4444444....5677777899999999999.59999****99876665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.1e-05     0.019       1      74 [.     368     463 ..     368     505 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
                 EEEESSTTSSHHHHHHHHHHHHTHE..EEEEETTTCSSS.....................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgve..fleisgsellsk.....................yvgesekkirelfkeakekakpsilfiDEidalaksr 74 
                 +l++G  G+GKT+++  +a++ ++e   + + + + +                       +  +s++ i + +++ak+     +l+ D + +l +++
  EHT99022.1 368 ILMVGVNGVGKTTTIGKLARQYQAEgkSVMLAAGDTFRAaaveqlqvwgqrnnipvvaqhTGADSASVIFDAIQAAKSRG-VDVLIADTAGRLQNKS 463
                 699******************86433344444444442346666666677777777755444455555555555555554.6788877777776666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-05     0.017       4      77 ..     367     444 ..     364     491 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.....kllelileklkeekktylflDEiqevp 77 
                 +++++G+  vGKTt + +l++++ ++ +s++  + d+ r ++ ++ +     +++ ++ ++  + +   +++D iq ++
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQvwgqrNNIPVVAQHT-GADSASVIFDAIQAAK 444
                 68899*****************9999999999999998887766655555544555555553.347788******9984 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.2   0.1   1.1e-05      0.01      21      66 ..     362     407 ..     338     494 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa 66 
                   +p ++l +G  GvGK++ + +l+r+++++g  ++ +  d +++a
  EHT99022.1 362 GKTPFVILMVGVNGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAA 407
                 4444678999******************999644444444444111 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00014      0.13       9      59 ..     375     472 ..     367     540 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH.................................................C CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.................................................x RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep.................................................d 55 
                 GvGKTt+  +Lar  + +g+ V l   D+ + ++     + g      +                                                  
  EHT99022.1 375 GVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEqlqVWGQ-----RnnipvvaqhtgadsasvifdaiqaaksrgvdvliadtagrlqnkshlmeE 468
                 9*********************998888775553312111111.....123555777775555555555555555555555555555555555555554 PP

                 CHCC CS
                 xxxx RF
        CbiA  56 lkrl 59 
                 lk++
  EHT99022.1 469 LKKI 472
                 4444 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   4.8e-05     0.043      12     108 ..     375     477 ..     367     492 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.8e-05
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanatt.glgi..ekneiektlyevli.eeknikeaiiktkvenldlipssid..Laeaeielvelekke 104
                 GvGKTTt  +la     +gk v+l   D+  +a++ +l++  ++n+i     ++ + + + i +ai+ +k++ +d++ +++   L++ +  + el+k +
  EHT99022.1 375 GVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVeQLQVwgQRNNIPVVAQHTGAdSASVIFDAIQAAKSRGVDVLIADTAgrLQNKSHLMEELKKIT 473
                 9***************************98888773344432344444444444455667788888888888888888876544666666666665555 PP

      AAA_31 105 eilk 108
                 +++k
  EHT99022.1 474 RVMK 477
                 5554 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   5.6e-05      0.05       3     120 ..     367     476 ..     365     492 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 v+l  Gv G GKt    +l+ ++   + e ++v+l     ++++  e+l+   +++++  +++   +   ++    +a++ ++++ +dv+i D A rl 
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLARQY---QAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVI--FDAIQAAKSRGVDVLIADTAGRLQ 460
                 78889*****************9...88888899999999999999999877766666666666655555555..7799******************** PP

     DUF2075 102 tksdqaekqseenqlkelm 120
                 +ks+  e+ ++   ++++m
  EHT99022.1 461 NKSHLMEELKK---ITRVM 476
                 *9988665543...33333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   0.00024      0.21       2      87 ..     368     497 ..     367     519 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
                 EEEEESTTSSHHHHHHHHHTS.TE...EESSSTTSSSSE.EEEEEE.ETTEE...............................EEEEECGGCSS.HHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.ka...ivsdkpgtTrdi.negrvk.lkgke...............................ielvDtpGlie.gase 62 
                 ++ vG   vGK+t i +l ++ +a    v   +g T      ++++ +++ +                               + ++Dt+G ++ +++ 
  EHT99022.1 368 ILMVGVNGVGKTTTIGKLARQyQAegkSVMLAAGDTFRAaAVEQLQvWGQ-RnnipvvaqhtgadsasvifdaiqaaksrgvdVLIADTAGRLQnKSHL 465
                 6789***************9764411133333344433323333333222.13566777777777777777777777777777********76432222 PP

                 HH...HHHHHHHHHHC.T.SEEEEEEETT..T CS
    MMR_HSR1  63 ek...glgkaflalee.a.dlillvvdas..e 87 
                  +   ++++ +++l+e a + ++l +das  +
  EHT99022.1 466 MEelkKITRVMKKLDEqApHEVMLTLDAStgQ 497
                 11233566666666555557788888877442 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.7   1.6e+03      93     119 ..     328     355 ..     315     356 .. 0.76
   2 ?   10.3   0.0   0.00047      0.42       4      79 ..     367     461 ..     364     484 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
      AAA_24  93 eskedkgdgkG.ygelaeefrrllkklq 119
                  +++   d+ + yg+l+ e+  +l k++
  EHT99022.1 328 ADRKQLRDAEAlYGLLKSEMAAILAKVD 355
                 445567789999********99998876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00047
      AAA_24   4 kiliyGpsgiGKTtlakel......gpkplfi...dtekGlksldadkfpdie...swedfldevvel................aaeladyktlviDti 74 
                  il++G +g+GKTt++ +l      + k +++   dt++   +  + +++      +++ +                       aa+ ++ ++l+ Dt+
  EHT99022.1 367 VILMVGVNGVGKTTTIGKLarqyqaEGKSVMLaagDTFR---AAAVEQLQVWGqrnNIPVV------AqhtgadsasvifdaiqAAKSRGVDVLIADTA 456
                 6999************99978778766666663333333...3333332211122222222......02233346666666677788888888888888 PP

      AAA_24  75 delee 79 
                 + l +
  EHT99022.1 457 GRLQN 461
                 87754 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.15      32      79 ..     342     392 ..     309     408 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
        VirE  32 vsklflvaavarvleP...giKfDfvlvLvGkqgsgKstfleklgeewftd 79 
                 + k  + a  a+v eP     K+ fv+ +vG  g+gK+t++ kl+ ++ ++
  EHT99022.1 342 LLKSEMAAILAKVDEPlnvEGKTPFVILMVGVNGVGKTTTIGKLARQYQAE 392
                 4577899999***99988788***********************9998776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.3    0.0018       1.6       2      30 ..     368     396 ..     367     400 .. 0.89
   2 ?    1.5   0.0      0.28   2.5e+02      82     116 ..     433     468 ..     396     484 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
                 EEEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkv 30 
                 +++ G  GvGKtT + k++++ + +g +v
  EHT99022.1 368 ILMVGVNGVGKTTTIGKLARQYQAEGKSV 396
                 567899**************999998776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHH CS
    NTPase_1  82 eelalealrkal.seadviviDEiGkmElkskkfke 116
                  +++ +a++ a  ++ dv++ D  G++  ks+ ++e
  EHT99022.1 433 ASVIFDAIQAAKsRGVDVLIADTAGRLQNKSHLMEE 468
                 5677888988887899*************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1190  (0.0663729); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                       129  (0.00719505); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 4006.22
//
Query:       EHT99023.1  [L=199]
Description: ribosomal RNA small subunit methyltransferase D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-61  207.5   0.0    1.4e-61  207.3   0.0    1.0  1  Cons_hypoth95    Conserved hypothetical protein 95
    1.7e-05   24.4   0.0    2.3e-05   24.0   0.0    1.1  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
       0.05   14.1   0.0       0.12   12.9   0.0    1.6  1  TetR_C_28        Tetracyclin repressor-like, C-terminal domai
      0.059   12.4   0.0       0.08   12.0   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
       0.11   11.7   0.0       0.14   11.3   0.0    1.1  1  RsmJ             Ribosomal RNA large subunit methyltransferas
       0.12   12.0   0.0        5.1    6.7   0.0    2.1  2  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   0.0   4.6e-65   1.4e-61       1     182 []      14     190 ..      14     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 4.6e-65
                    EEXXSCCCTTXEEEXTTXXXXXSSSHHHHHHHHHHHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEE CS
  Cons_hypoth95   1 lriigGkakgrkLkvlegkstRPttdrvrealFnilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetael 96 
                    +riigG+++grkL v+++ ++RPttdrvre+lFn+la+++++a +LD+faGsGalglEAlSR+a++a+l+e ++ ++++l++nl++l++++   ++
     EHT99023.1  14 IRIIGGQWRGRKLPVPDSAGLRPTTDRVRETLFNWLAPHLQQADCLDCFAGSGALGLEALSRYAASATLLELERPVAQQLSKNLQTLQASN--GNV 107
                    7***************************************************************************************987..889 PP

                    EES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHHTT-EEEEEEEEEEEECCSSS--.-TTEEEEEEEEETTEEEEEEE CS
  Cons_hypoth95  97 kedaleallklakkkeefdivflDPPyakellieevlelleekkllkenalvvvetekekelpespenlelvkekkygettlalyk 182
                    +++++ ++l +   +++f ivf+DPP++++ll e++l+ll+++++l+ +alv+ve+e e+ +p  p ++ l++ek +g++ ++ly+
     EHT99023.1 108 VQTNTLSWLAQ--DGHPFGIVFVDPPFRQGLL-EQTLQLLKKNNWLTADALVYVESEVENGPPPVPVHWDLHREKIAGQVAYRLYQ 190
                    99999999777..7899*************85.**************************************************996 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   7.8e-09   2.3e-05      23     112 ..      49     137 ..      37     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.8e-09
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST..TS-EEEEEE---STTTCH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve..ekkfdlivsNPPfhagka 112
                 L+ +l++    + lD  +G G+lg+++++++   + tl++ +    +   +nl++ +++ ++vv+++ l+ ++   + f ++   PPf++g  
  EHT99023.1  49 LAPHLQQ---ADCLDCFAGSGALGLEALSRYAA-SATLLELERPVAQQLSKNLQTLQASnGNVVQTNTLSWLAqdGHPFGIVFVDPPFRQGLL 137
                 4444444...679****************9988.7999**999999999999999999889999999999877324679***********984 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.9e-05      0.12      24      92 ..      76     145 ..      56     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
                 HHHGGGSHHHHHHHHHHHHHHS--TTGG.-HHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHH CS
   TetR_C_28  24 laalaedpellepwrewyrrwlerlead.gldpvlatlvrlAadGlwlaellglppldpeeraallerLl 92 
                  aa a+  el +p+++++++ l+ l+a  g   ++ tl +lA dG  +  ++  pp+ + ++++ l+ L 
  EHT99023.1  76 YAASATLLELERPVAQQLSKNLQTLQASnGNVVQTNTLSWLAQDGHPFGIVFVDPPFRQGLLEQTLQLLK 145
                 578888899*****************9955559********************************99986 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05      0.08      31      88 ..      55     115 ..      43     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                 TSEEEEES-TTTCCHHH.HHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGH CS
      RrnaAD  31 kltvleigpGkGilTee.LakrakqvvvlElderLakllqkkls..kdeklkvvhqDflkf 88 
                 +   l+  +G G+l  e L  +a + ++lEl +  a+ l+k+l+  ++++ +vv+++ l +
  EHT99023.1  55 QADCLDCFAGSGALGLEaLSRYAASATLLELERPVAQQLSKNLQtlQASNGNVVQTNTLSW 115
                 56679999******965167788******************9999999999******9999 PP

>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.8e-05      0.14      55     137 ..      52     134 ..      38     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.8e-05
                 HTTTTSS--EEE-HHHHHH.HHS-TT-EEEEE---TTHHHHHHHHTT..T-TTEEEESS-HHHHHHHS-S-TTS-EEEEE----SS CS
        RsmJ  55 klnkgeklryYpGspllar.rllReqDrlvlteLhpkdaalLkaela..kdkrvrvkkadGfaalkaklppkekRglvliDPPyea 137
                 +l + + l+ ++Gs  l   +l R + +++l eL    a+ L ++l+  + ++ +v +++  + l ++  p    g+v++DPP+ +
  EHT99023.1  52 HLQQADCLDCFAGSGALGLeALSRYAASATLLELERPVAQQLSKNLQtlQASNGNVVQTNTLSWLAQDGHP---FGIVFVDPPFRQ 134
                 667788899*****99975156799*******************998224567788888877766555444...48********75 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0017       5.1       7      41 ..      44      75 ..      42      83 .. 0.80
   2 ?    3.5   0.0     0.016        48     175     207 ..     121     152 ..      86     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
                     TTHHHHHCCS-..--SEEEETT-TTSCCHHCS... CS
  MethyltransfD12  7 kllpeIkelipkdkgktfvepFaGggaVffeakkq 41
                     +l +++  ++ +       + FaG+ga+++ea+++
       EHT99023.1 44 TLFNWLAPHLQQ---ADCLDCFAGSGALGLEALSR 75
                     577888888883...4589************9764 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.016
                      -TTE.EEEE--S-T.S...TS--GGGG.CS-HH CS
  MethyltransfD12 175 kieddivYlDPPYnprqytanytlyetlafsde 207
                      +  + iv++DPP ++    ++  l++++++ ++
       EHT99023.1 121 HPFG-IVFVDPPFRQGLLEQTLQLLKKNNWLTA 152
                      5556.9******998777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1548.19
//
Query:       EHT99024.1  [L=89]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-26   90.5   9.6    7.7e-26   89.8   9.6    1.3  1  DUF1145   Protein of unknown function (DUF1145)
  ------ inclusion threshold ------
        2.5    8.3   5.4         15    5.8   0.0    2.9  3  S1FA      DNA binding protein S1FA


Domain annotation for each model (and alignments):
>> DUF1145  Protein of unknown function (DUF1145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   9.6   8.6e-30   7.7e-26       1      58 []       1      58 [.       1      58 [. 0.98

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 8.6e-30
     DUF1145  1 mlinlGKllmlgfWlvlllNLihPfpkplnlllnialgflllmHllqlllfkatlkkr 58
                ml+nlG+llml++W++ll+NLihP+pkpl +++n+al+f++lmH+lql+l+++t++k+
  EHT99024.1  1 MLLNLGRLLMLCVWGFLLFNLIHPYPKPLTWFINVALIFMILMHGLQLVLLRTTQGKD 58
                89*****************************************************985 PP

>> S1FA  DNA binding protein S1FA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.5     0.015   1.3e+02       7      29 ..       3      25 ..       2      27 .. 0.87
   2 ?    0.6   0.4     0.073   6.6e+02       7      25 ..      33      51 ..      30      54 .. 0.84
   3 ?    5.8   0.0    0.0017        15      19      42 ..      66      89 .]      63      89 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.015
        S1FA  7 lnPGlivllvvggllllflvgny 29
                ln G +++l v g+ll  l+  y
  EHT99024.1  3 LNLGRLLMLCVWGFLLFNLIHPY 25
                788999999*******9998766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.073
        S1FA  7 lnPGlivllvvggllllfl 25
                +n  li ++++ gl l++l
  EHT99024.1 33 INVALIFMILMHGLQLVLL 51
                5788999999999999876 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0017
        S1FA 19 gllllflvgnyvlyvyaqktlPpr 42
                + + +fl g + l  + +k++P +
  EHT99024.1 66 TQIKVFLFGVFELVAWQKKNFPRK 89
                67889****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 649.01
//
Query:       EHT99025.1  [L=118]
Description: hypothetical protein CKS_0931 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-33  115.8   0.1    1.5e-33  115.6   0.1    1.0  1  DUF2500   Protein of unknown function (DUF2500)
  ------ inclusion threshold ------
       0.57   10.3   2.0       0.98    9.6   2.0    1.5  1  DUF2973   Protein of unknown function (DUF2973)


Domain annotation for each model (and alignments):
>> DUF2500  Protein of unknown function (DUF2500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.1   1.6e-37   1.5e-33       1     109 []       4     114 ..       4     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 1.6e-37
     DUF2500   1 pllfiivialiivlatrqivrqikqeakndaapvltvqaevvdKreevipnr..rqreeieaeestrYyvtfelesGe.rielsvsgkeYgalaegdqG 96 
                 pllfiiv+a+i+vlatrq+++q+++ a nda+pv+tv +ev +Kre ++++r  r+re i   e +rY+++f++ +Ge +i+++v++++Y+++++g++G
  EHT99025.1   4 PLLFIIVVAIIAVLATRQFIKQRREAAVNDASPVRTVAVEVKTKREFSVSSRrsREREVIAGDE-MRYEAWFHPLNGEsDIKMRVNESDYHLMDKGTKG 101
                 79************************************************77767777776666.**********99857******************* PP

     DUF2500  97 kLtyqGtrflgFe 109
                 +Lt+qGtrf++F+
  EHT99025.1 102 ELTLQGTRFIRFT 114
                 ************5 PP

>> DUF2973  Protein of unknown function (DUF2973)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.0   0.00011      0.98       3      31 ..       4      32 ..       4      76 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
     DUF2973  3 hllYilaftvlaflAvanLirslitlsad 31
                +ll+i+++ ++a+lA ++ i+    +  +
  EHT99025.1  4 PLLFIIVVAIIAVLATRQFIKQRREAAVN 32
                69*****************9976665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 952.72
//
Query:       EHT99026.1  [L=209]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-39  134.9  18.1    2.8e-39  134.7  18.1    1.1  1  YhhN       YhhN family
      0.002   17.2   1.2      0.002   17.2   1.2    1.8  2  PalH       PalH/RIM21


Domain annotation for each model (and alignments):
>> YhhN  YhhN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7  18.1   3.1e-43   2.8e-39       1     184 []      26     206 ..      26     206 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 3.1e-43
        YhhN   1 lrllfKplpvllLlllvlleskeasryrrlilagLlfsavGDvlLlkkkkrsfllGlvaFllaHilYivafleqratstlslllllllllaaavllall 99 
                 +r+lfKp+++llL+ l+++ +++ +++++li+agL+++++GD l l  +++++l+ l+aF+l+H+lY++ f+ +++t t+ +++ l++l++++v++ +l
  EHT99026.1  26 QRWLFKPVTLLLLVGLAWQ-APTRNTSDYLIVAGLVATLIGDTLTL-LPRQQMLYALGAFFLSHLLYTLCFA-ANMTMTFYWPIPLTFLIIGVVVIGVL 121
                 58*****************.9999********************99.9************************.************************** PP

        YhhN 100 lprlgklkipvlvYalvistmvatAlesllslsslaallaalGallFviSDlllainkfvrklpaarllvmitYfaaQllIalsv 184
                 +++l++l++pv++ + + ++m ++A+e++    s++++++++G++l+++  +++ i++f+r+++a +++v ++Yfa++++I++s+
  EHT99026.1 122 WSKLETLRWPVCTLIGMTLVMNWMATEQYVFRPSDYSFSILVGSALLLLANIVWFISHFRRRFSADSAIVAACYFAGHFMIVRSL 206
                 **********************************************************************************985 PP

>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5     0.084   7.6e+02     208     230 ..      78      99 ..      44     130 .. 0.59
   2 !   17.2   1.2   2.2e-07     0.002     152     215 ..     132     195 ..     120     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.084
        PalH 208 dalpalsylfelalvtlyaalvi 230
                  al a++ l +l+  +++aa ++
  EHT99026.1  78 YALGAFF-LSHLLYTLCFAANMT 99 
                 3333332.444445555554443 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.2e-07
        PalH 152 vlelisnlllnlaqvqivirlfsrqkekriiilvGlaliildtilsalllfsk..kfldalpalsy 215
                 v+ li ++l  ++++ +  ++f r ++  + ilvG+al++l +i++ +++f+   ++ +a+ a++y
  EHT99026.1 132 VCTLIGMTL-VMNWMATEQYVF-RPSDYSFSILVGSALLLLANIVWFISHFRRrfSADSAIVAACY 195
                 677777766.57**********.99**************************445644444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1701.54
//
Query:       EHT99027.1  [L=762]
Description: zinc, cobalt and lead efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-44  151.4   0.0    1.9e-44  151.4   0.0    2.6  3  E1-E2_ATPase  E1-E2 ATPase
    1.3e-39  136.7   2.2    2.1e-39  136.0   2.2    1.4  1  Hydrolase     haloacid dehalogenase-like hydrolase
    3.8e-09   36.9   0.0    7.6e-09   35.9   0.0    1.5  1  HMA           Heavy-metal-associated domain
    3.5e-06   27.0   0.2    3.2e-05   23.8   0.4    2.0  2  Hydrolase_3   haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.4      0.94   4.2e+03     124     162 ..     156     194 ..     153     194 .. 0.84
   2 !  151.4   0.0   4.2e-48   1.9e-44       2     181 .]     260     440 ..     259     440 .. 0.98
   3 ?   -0.9   0.6      0.23     1e+03      91     151 ..     690     751 ..     680     757 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.94
                   HHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TT CS
  E1-E2_ATPase 124 pvvlliallvflialllgkslaeallralallvaaiPca 162
                   p+ ll+al+v+ +al+    ++   l++l++lv+ +P a
    EHT99027.1 156 PLLLLAALMVASAALSQVSAVWGDRLFILTTLVGLVPVA 194
                   667888888888888888888899999999999999976 PP

  == domain 2  score: 151.4 bits;  conditional E-value: 4.2e-48
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   l+p+ a ++++gt  e++ + l+pGD +++ ag r p+Dg ++ +sa++desaLTGEs+pv +++g+++ +G++ v+  ++ +V+    ++ +++i 
    EHT99027.1 260 LRPEFAVRLQNGTRSEVPLSALQPGDRIVIAAGGRLPVDGCLLAESASFDESALTGESVPVLRQRGEKILAGATSVDRLVELEVVSRPGESAIDRIL 356
                   678889999**************************************************************************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallvaaiPcaLplavplalalgarrlakk 181
                   +l+eea+s ++p+++++d+++++++p+++l+allv+++ +l g +++  +++++l+ll++ +PcaL++ +p a++ g++++a++
    EHT99027.1 357 QLIEEAESHRAPVERFIDNFSRIYTPAIMLLALLVMVLPPLFGAGAWlPWVYKGLTLLLIGCPCALVISTPAAITSGLAAAARR 440
                   *****************************************9999999*********************************986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.23
                   TSTTTTTSTTS--------HHHHHHHHHHHH.HHHHHHHHHHHHHHS-STTTSSTTHHHHHH CS
  E1-E2_ATPase  91 dtelgkiarlveeakskktplqkkldklgkv.lvpvvlliallvflialllgkslaeallra 151
                    ++l+ +a +++ a+++++ + +++    +    ++v+++a l+ l + +l +s a+al+ a
    EHT99027.1 690 RNQLSNLAPMIALARRTRAIIRQNIAIALGLkALFLVTTLAGLTGLWLAVLADSGATALVTA 751
                   67888899999999999999988888777775777888888888888777777777777765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   2.2   4.7e-43   2.1e-39       1     209 [.     456     667 ..     456     668 .. 0.90

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 4.7e-43
                 SSEEEEESBTTTBCHHHHHHHHHHHH......CHHHHHHHHHHHHCHHHHHHHHHHHHH...HHHHHHHHHETTTE........HHHHTHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx........xxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa......alalaaaletgsehpigkalvaaakar...sgaltgfatfigrg........ayaigkpewltaldi 82 
                 + t++fDk+GTLt+g+p+++++++         l+l+aa e gs+hp++ a+vaaa+ r    ++ t+ ++++g g        ++    p ++ +l  
  EHT99027.1 456 VQTIAFDKTGTLTEGRPQLTRILPFGeanedaILQLGAAVEQGSTHPLATAIVAAAQSRalpLPSATQQQALAGSGiqaevdgqRITLLAPSYVSSL-- 552
                 579******************9999955665566666666666****************87666669999999999997777777777777777777.. PP

                 HHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  83 ppdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegk 179
                 +p  +a +++ ++qg+t +++  ++++l+ +++ d+  ++ e+  a+++Lka gi+  +ltgdnp+ a  +a+ lG           i  +a  +p gk
  EHT99027.1 553 SPAHQAMVHEQEAQGETLVMVlrNGEVLGALALRDK--LRSETPAALQALKALGINSLMLTGDNPRAAAVVAQPLG-----------IAWHASLLPAGK 638
                 9999999**********999999*************..**************************************...........999********* PP

                 HHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 180 vaaireLqgkpeevamVGDgvnDaaalaaA 209
                 v+a+r+L  + + vamVGDg+nDa+a++aA
  EHT99027.1 639 VEAVRQL-SEQQVVAMVGDGINDAPAMKAA 667
                 *******.77779****************9 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.7e-12   7.6e-09       3      62 .]      80     137 ..      79     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.7e-12
         HMA   3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 +vsgm+C +Ca+++e ++  lp+V +v v + + +++V+  a+    ++i  a+ kag++
  EHT99027.1  80 QVSGMDCPSCARAIETAVRQLPDVLQVRVVFSSEKLVVNARAPVQ--SAIEDAVVKAGFH 137
                 69**************************************66652..89*********97 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.087   3.9e+02      15      55 ..     588     628 ..     583     634 .. 0.89
   2 !   23.8   0.4     7e-09   3.2e-05     203     247 ..     648     692 ..     636     700 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.087
                  ---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  15 kisektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  k+  +t +a++ lk+ gi+    TG ++ra+  v++ lg+ 
   EHT99027.1 588 KLRSETPAALQALKALGINSLMLTGDNPRAAAVVAQPLGIA 628
                  56788999************************999999975 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 7e-09
                  GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GG CS
  Hydrolase_3 203 leeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnn 247
                  ++ v+ +GDg ND + ++aa lg+Amg++++ + + Ad   + n+
   EHT99027.1 648 QQVVAMVGDGINDAPAMKAATLGIAMGSGTDVALETADAALTRNQ 692
                  3445668*******************************9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5725.29
//
Query:       EHT99028.1  [L=83]
Description: sulfur transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-24   84.3   0.0    4.2e-24   84.1   0.0    1.0  1  TusA      Sulfurtransferase TusA
      9e-05   22.3   0.1    0.00011   22.0   0.1    1.3  1  DUF2249   Uncharacterized conserved protein (DUF2249)


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   4.7e-28   4.2e-24       1      70 []      10      79 ..      10      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 4.7e-28
                EEEEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-GCC-EEEEEEE CS
        TusA  1 ielDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelveveeedgeyrivirk 70
                ++lD++Gl+CPeP+++++k+++ +++ge+l ++addpa+t+dip f++ + h+l++ + +   y+++i+k
  EHT99028.1 10 HQLDAQGLRCPEPVMMVRKTVRGMQDGETLLIIADDPATTRDIPGFCRFMEHQLLAEQTDTLPYQFLIQK 79
                79***************************************************99886666889****98 PP

>> DUF2249  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.3e-08   0.00011       2      34 ..      12      44 ..      11      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-08
     DUF2249  2 lDvRelppperhaaIfeafeaLapGetlelvnd 34
                lD+++l  pe+  ++ ++++ +++Getl++++d
  EHT99028.1 12 LDAQGLRCPEPVMMVRKTVRGMQDGETLLIIAD 44
                9******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 632.12
//
Query:       EHT99029.1  [L=221]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-33  115.7  12.8    3.6e-33  115.0  10.4    1.9  2  Vut_1            Putative vitamin uptake transporter


Domain annotation for each model (and alignments):
>> Vut_1  Putative vitamin uptake transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.026   4.6e+02      23      47 ..       7      31 ..       4      39 .. 0.79
   2 !  115.0  10.4     2e-37   3.6e-33       1     147 [.      43     198 ..      43     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.026
       Vut_1 23 kkaarkvvllgflanllalilllla 47
                +++a+++v+l+++  l+++   +l+
  EHT99029.1  7 RQRAHTLVWLSLFHLLVITSSNYLV 31
                5789999999999999887766665 PP

  == domain 2  score: 115.0 bits;  conditional E-value: 2e-37
       Vut_1   1 taGvllfpltflitdiisevyGkkaarkvvllgflanlla.lillllalllpa...ealesvfgltprivlasliaylvsqlldvyvfhrlkkltkgkk 95 
                 t+G++ fp++fl+td++++++G+  ar+++l++++++l++ ++++ l+ + +    +al++v  +++ri+ as++ay ++q+ldv+vf+rl+   +  +
  EHT99029.1  43 TWGAFGFPFIFLATDLTVRIFGAPLARRIILAVMVPALFIsYAISSLFYQGEWqgwQALQQVNLFVARIACASFMAYALGQILDVHVFNRLR---RLPQ 138
                 79***********************************999777777776555577999*********************************9...4457 PP

       Vut_1  96 lwlrnigStlvsqlvdtlifvtiaflg.......eqlleiilsqyliklliall.dtplv 147
                 +w+++ ++++++++ dtl f++iaf+        ++++ei+l++y +k+li ++ ++p +
  EHT99029.1 139 WWVAPGCAMFLGNISDTLAFFFIAFYKssdpfmaQHWVEIALADYSFKVLICMIfFLPAY 198
                 *************************559**************************777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1761.92
//
Query:       EHT99030.1  [L=184]
Description: DcrB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-32  110.9   0.9    5.9e-32  110.5   0.9    1.2  1  DcrB      DcrB
    0.00092   18.7   0.1     0.0017   17.8   0.1    1.5  2  DUF1454   Protein of unknown function (DUF1454)
     0.0034   17.5   0.3     0.0047   17.1   0.3    1.2  1  PsbP      PsbP


Domain annotation for each model (and alignments):
>> DcrB  DcrB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.9   9.9e-36   5.9e-32       3     128 .]      50     180 ..      49     180 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 9.9e-36
                 EEEEETTSEE--.........BEEEEE--BTT-EEEEEEEE---TTS-HHHHHHHHHHHHHHHSTT-EEEEEEEEEET.TEEEEEEEEEEEETTEEEEE CS
        DcrB   3 tltLPagwqDrS.........vnvlvfpdeatgaslvIsRdeleegetleeylerqlkqlrkrlkgfqlleekpatlgaglpaeelevtyrkkgkpvyq 92 
                 ++tLP g++D+S         ++v++++    ga+++I+++  +++e l+ +++r  +q+r+r++++q++++k++tlg g+pa++l++ +++++++ ++
  EHT99030.1  50 RFTLPPGLSDKSgklgsqstnMHVYADES---GARAIIVIAGEPTNEALDVLAQRMEQQQRNRDPQLQVVSNKAVTLG-GEPAQQLDTVISANNQTSWS 144
                 69**************************9...**********************************************.******************** PP

                 EEEEE--SSSEEEEEEEE-CCCHHHHHHHHHHHHCT CS
        DcrB  93 lqvlvevprrvLiftltspgefteeqrahweailas 128
                 ++vl++v+++++++++t+pg++++++++++e++++s
  EHT99030.1 145 SVVLAKVDGKLMTMQITLPGDNQQQAQSDAETVVKS 180
                 *********************************987 PP

>> DUF1454  Protein of unknown function (DUF1454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.21   1.2e+03     147     168 ..      63      84 ..      27      95 .. 0.70
   2 !   17.8   0.1   2.9e-07    0.0017      39     120 ..      95     176 ..      63     183 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
     DUF1454 147 ellskgkkkryysqneGalRyv 168
                 +l s++++ ++y+ + Ga   +
  EHT99030.1  63 KLGSQSTNMHVYADESGARAII 84 
                 4556777778888888874433 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.9e-07
     DUF1454  39 FdltisqfRekynkanptlpleEyrvidskddka.nltRAAskineklYssavLErgtekikslqltllpseegpeekearak 120
                  d+  +++ ++  ++ p+l++   ++++   + a +l    s  n++ +ss+vL +  +k+ ++q+tl p+ ++++ +++ ++
  EHT99030.1  95 LDVLAQRMEQQQRNRDPQLQVVSNKAVTLGGEPAqQLDTVISANNQTSWSSVVLAKVDGKLMTMQITL-PGDNQQQAQSDAET 176
                 344555666667777899***9****9998775515667788899999*******************5.64444444433333 PP

>> PsbP  PsbP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   7.9e-07    0.0047      40     155 ..      67     182 ..      63     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.9e-07
                 TTSEEEEEEEE-STT--CHHH--HHHHHHHHHHHCCCHCTSSEE..EEEEEEEEEEET.TEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEE CS
        PsbP  40 sdenvsVvispvskdksledlGspeevaerlvkqvlassesgre..aelidaeereaddgktyYeleytvkspdeqerhqlaavavsngkLYtltlqtp 136
                 +++n+ V   + +    +   G+p++ a  ++ q +++++++r+   ++++ ++  +  g++  +l+  ++ ++ q+  + +++a  +gkL t+++  p
  EHT99030.1  67 QSTNMHVYADESGARAIIVIAGEPTNEALDVLAQRMEQQQRNRDpqLQVVSNKAV-TLGGEPAQQLDTVISANN-QTSWSSVVLAKVDGKLMTMQITLP 163
                 5677888887777777788889999999999988887777776622666666664.557************999.55555555555899********** PP

                 HHHHCCCHHHHHHHHHC-E CS
        PsbP 137 ekrwekvekklekvvkSFr 155
                  ++ ++ +++ e+vvkS +
  EHT99030.1 164 GDNQQQAQSDAETVVKSIT 182
                 *****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1478.46
//
Query:       EHT99031.1  [L=640]
Description: 5-keto-2-deoxygluconokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.4e-136  452.4   0.2   8.5e-136  452.0   0.2    1.2  1  DUF2090   Uncharacterized protein conserved in bacteria (DUF2
    1.6e-41  142.6   0.0    3.8e-41  141.4   0.0    1.6  1  PfkB      pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.064   13.4   0.1       0.23   11.7   0.1    1.9  1  DUF4148   Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> DUF2090  Uncharacterized protein conserved in bacteria (DUF2090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.0   0.2  1.4e-139  8.5e-136       1     311 []     327     636 ..     327     636 .. 0.99

  Alignments for each domain:
  == domain 1  score: 452.0 bits;  conditional E-value: 1.4e-139
     DUF2090   1 EldafleeaekekrldkdeelehlHrvttrrkeweellvlAfDHRsqleelareagadlerikelkkLlvkaaeevaeeagleegkvgvLiDdrygqda 99 
                 Eld fl++++++kr+d d++l hlHrvt+r+++w+el ++AfDHR+ql+e+a+eagad +ri++lk Ll++aae++ ++ag+ e+k g+L+D+++gq++
  EHT99031.1 327 ELDDFLSREQDVKRPDLDSRLTHLHRVTSRQHAWPELNIFAFDHRKQLVEMATEAGADVSRIPQLKLLLLQAAEQAVQQAGI-ESKSGILADTTFGQKT 424
                 8*********************************************************************************.7*************** PP

     DUF2090 100 lneatgkgwWigrpvElpgsrPlrlelgrsvgselveWpkehvvkclvfyHPddeaelraeqeaklkelyeaarksghelllEvippkdaesk.detvl 197
                 ln++tgk+ Wigrp+ElpgsrPlrle+g s+gs+l+ Wp+ehvvkclvfyHP d+aelr+eq+a l e+++++++sghelllEvi+p +++++ ++++l
  EHT99031.1 425 LNAITGKNRWIGRPIELPGSRPLRLEHG-SIGSQLIGWPAEHVVKCLVFYHPHDSAELREEQDALLLEVWKSCNQSGHELLLEVILPDSQPDHnEAHFL 522
                 ****************************.***********************************************************9987758899* PP

     DUF2090 198 ralerlYnlGvkPdWwkleplsaeaweeiealieerdpycrGvvlLGldapaeelaagfeaaaasplvkGFavGRtifaeparaWlageidDeelveev 296
                 ++l+++Y+lG+kPdWwkl+pls ++w++i alie++dpycrG++lLGldap+++l+agf+aaa++p vkGFavGRtifa+p+r+Wl+gei D++lv++v
  EHT99031.1 523 KMLNHFYALGIKPDWWKLPPLSPASWRDIGALIEQQDPYCRGILLLGLDAPEATLKAGFAAAAQAPWVKGFAVGRTIFAQPSRQWLQGEIRDDALVAAV 621
                 *************************************************************************************************** PP

     DUF2090 297 aanfeelielWrerr 311
                 ++n+ +li++Wr++r
  EHT99031.1 622 KENYLRLIDYWRQAR 636
                 ************986 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.0   6.3e-45   3.8e-41       3     301 ..       9     324 ..       7     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 6.3e-45
                 EEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTS CS
        PfkB   3 kvvviGealidliavseklegelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedg 101
                 +v +iG + +d+++ + +  + l    ++ k+ GG+  NvA + a +g ++a++ +vGd   G+fl+e+l+  g +t+ ++ d++  t+l ++ ++ ++
  EHT99031.1   9 DVICIGRIAVDFYGQQIG--ARLEDTTSFAKYLGGSSGNVAYGTAIQGLKSAMLARVGDEHNGRFLRESLQRVGCNTEALITDKKRLTALVILGIKDED 105
                 689************999..8888*************************************************************99999999999778 PP

                 EEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHH...............HHHHHHHHH CS
        PfkB 102 ertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggt..fdpnlldplgaq...............fkeallell 181
                    ++f+r + ad+   + + +ed ++++  +++ g  l  ++ + avl++l++a+k+g     d  +++ l+                 +  +l++++
  EHT99031.1 106 TFPLIFYRDNCADMALVPDDINEDFIASSRSVAVTGthLSHPQTRAAVLKALEYARKHGLRtaLDIDYRPVLWGLtslgdgetrfiasseVTAQLQQVM 204
                 8889**************99*****************97777899999999999999998899999****9996588888999999999*999****** PP

                 CTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.....TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHH CS
        PfkB 182 aladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.....kdgelkvpavpkvkvvDttGAGDsfvggflaallegksl 275
                  ++dl+ ++eeE+ +  g++     + l al+++ +  ++t+v ++G+ G++v+e     + + +k ++   v+v ++ GAGD+f++g+l ++l+ + +
  EHT99031.1 205 HYFDLIVGTEEEFHIAGGST-----DTLTALKNVRTVSNATLVCKRGAMGCVVFEgaipdNWAAVKLHSGVRVEVLNVLGAGDAFMSGLLRGWLNDEGW 298
                 **************888888.....566666666667889******************99888888888889*************************** PP

                 HHHHHHHHHHHHHHHTSSSSSTCSCC CS
        PfkB 276 eealrfanavAalvvqkkgaiaslpt 301
                 e+a+r+ana++alvv+++g++ ++pt
  EHT99031.1 299 EQACRYANACGALVVSRHGCAPAMPT 324
                 *********************99998 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.9e-05      0.23      17      50 ..     137     170 ..     130     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
     DUF4148  17 aaala.ahskspkTRAqVraELaqaeaaGylpsgd 50 
                 +a+ +  h ++p TRA V   L+ a++ G++++ d
  EHT99031.1 137 VAV-TgTHLSHPQTRAAVLKALEYARKHGLRTALD 170
                 333.3478889******************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4746.73
//
Query:       EHT99032.1  [L=646]
Description: epi-inositol hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-40  136.0   0.0    4.6e-39  133.7   0.0    2.2  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    1.5e-34  119.1   0.0    7.6e-34  116.8   0.0    2.1  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.4e-32  112.3   0.0    5.8e-32  110.3   0.0    2.0  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
      0.011   15.3   0.1        2.5    7.6   0.0    2.5  3  DUF2974       Protein of unknown function (DUF2974)
       0.11   12.3   0.0       0.24   11.2   0.0    1.5  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha


Domain annotation for each model (and alignments):
>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.75   2.7e+03     128     151 ..     212     235 ..     186     235 .. 0.83
   2 !  133.7   0.0   1.3e-42   4.6e-39       2     153 .]     442     601 ..     441     601 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.75
                   SSH.HHHHHHHHHHHHCSSSEEEE CS
  TPP_enzyme_C 128 ekadveeleealkealekkgpali 151
                   ++++v++le+alk  ++k++p +i
    EHT99032.1 212 RQPTVAQLEDALKLIIRKRKPLII 235
                   467899*******99999999776 PP

  == domain 2  score: 133.7 bits;  conditional E-value: 1.3e-42
                   SSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCC CS
  TPP_enzyme_C   2 iGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggk 98 
                   +G+l+++++r ++ +  + y+ ++g+++mGy++ aA+G+kla+p+rev+a+vGDG+f+m ++el+t+ +++++i+vv+l+N + g++++ q+ +g++
    EHT99032.1 442 AGSLPGDLQRAWRTRGYNGYHLEYGYSCMGYEVNAALGVKLAQPEREVYALVGDGSFMMLHSELVTSLQEGAKINVVLLDNMSNGCINNLQMGHGMD 538
                   8999*******88888999****************************************************************************** PP

                   TTTTSBB...........BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  99 rksgpagk..........dlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +++++ +           +l pvdfa++a+++G+k +rv++   e+l +al++a +++ ++li++
    EHT99032.1 539 SFVTEFRFrnpdggkldgGLVPVDFAAIAAGYGCKTYRVSTL--EQLTAALEDAKTQRVSTLIDI 601
                   ****9998********9889***************9998777..*******************97 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   2.1e-37   7.6e-34       2     169 ..       7     196 ..       6     199 .. 0.89
   2 ?   -1.3   0.0       0.4   1.4e+03     114     143 ..     561     590 ..     546     595 .. 0.84

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 2.1e-37
                   EHHHHHHHHHHHCT--E..........EEE---CCCHH.HHCCHHCT..TSEEEE-SSHHHHHHHHHHHHHHH..TS-EEEEE-CHHHHHHCHHHHH CS
  TPP_enzyme_N   2 tvaealvraLkalgveh..........vfgvpGsrilp.lldalseeq.girvvlarhEqgaafaAdgyarat..gkpgvvlvtsgpGatnaltala 84 
                   t+a+alv+ L ++ +++          +f+++G++++  l  al+    ++ v++ r+Eqg+a+aA g+a+ +  +++ ++  ++gpGa+n+lta+a
    EHT99032.1   7 TTAQALVKFLDNQYIDVdgtetkfvkgIFAIFGHGNVLgLGQALEHDSgDLVVYQGRNEQGMAHAATGFAKQSlrRQIIACTSSVGPGAANMLTAAA 103
                   889*********************************9967777777779**********************77425555555555************ PP

                   HHHHHT--EEEEEEE--CCCHHS..TC--T.......-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHH.HSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  85 eAkvdriPllvlsgdrptslrgqgvlqqel.......dqlalfrpvtkyaervtspeelpealrrAirta.lsgrpgPvylelpkdvlleevd 169
                   +A  +riPll+l+gd+++++++++vlqq         + ++ fr v ky +rv++pe+l +a   A+r++ +++++g+v l+lp+dv+ e+ d
    EHT99032.1 104 TATANRIPLLLLPGDVFATRQPDPVLQQIEqpwdlsiSTNDAFRAVSKYWDRVSRPEQLMSACINAMRVLtDPAETGAVTLSLPQDVQGEAWD 196
                   **********************99999666776555556666****************************999***************99765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.4
                   T-CCHHHCCCSSEEEE-SSGGGHHHHHHHH CS
  TPP_enzyme_N 114 ldqlalfrpvtkyaervtspeelpealrrA 143
                   +d +a+++ +   ++rv++ e+l  al++A
    EHT99032.1 561 VDFAAIAAGYGCKTYRVSTLEQLTAALEDA 590
                   5889999999999***********999988 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   1.6e-35   5.8e-32       2     137 .]     220     353 ..     219     353 .. 0.88
   2 ?   -1.4   0.0       0.5   1.8e+03      16      58 ..     566     610 ..     564     635 .. 0.63

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 1.6e-35
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                   e+a++l+ ++++p+i++Gggv++sga e+lr++ae+++iP+++t++gkg++ +dhpl++g +g +g  aan +++eaDlv+ +G+r++d++t +++ 
    EHT99032.1 220 EDALKLIIRKRKPLIICGGGVKYSGAGEALRAFAERYQIPFAETQAGKGTLLSDHPLNVGGVGETGCLAANLLAKEADLVIGIGTRYTDFTTSSKWI 316
                   799**************************************************************************************76655665 PP

                   TTTTT-.EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  99 efapea.kiihididpaeigknyqvdlaivgdvketleaL 137
                    f   +  +++++++  +  k     +++++d++e+l aL
    EHT99032.1 317 -FRHPDvSFLNVNVSNFDSYKLD--GVQLLADAREALLAL 353
                   .4444446777776666666554..59*******999776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.5
                   EEE-CHHCHT..TGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTT CS
  TPP_enzyme_M  16 ilvGggvars..gaseelrelaeklgiPvvttlmgkgvipedhpl 58 
                   i +G g+++    + e+l++ +e  +   v+tl    v+p++  +
    EHT99032.1 566 IAAGYGCKTYrvSTLEQLTAALEDAKTQRVSTLIDIKVLPKTMIH 610
                   777888887733466788888888888888888777777776433 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0043        15      97     131 ..      68     102 ..      46     124 .. 0.74
   2 ?    7.6   0.0   0.00071       2.5     101     165 ..     373     440 ..     367     457 .. 0.76
   3 ?   -3.6   0.1       1.9   6.7e+03     172     203 ..     608     640 ..     598     643 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0043
     DUF2974  97 lAvyaamnaeddlqeriskiysfDgpGfskevves 131
                 +A+ a  +a+++l+++i ++ s  gpG  + ++  
  EHT99032.1  68 MAHAATGFAKQSLRRQIIACTSSVGPGAANMLTAA 102
                 8999999********************66555443 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00071
     DUF2974 101 aamnaeddlqeriskiysfDg...pGfskevveseeykkikskikklvPessivgmlleseeev.iivk 165
                 a  ++ed+ q r+ +i  +D    p   +++ +++ y++ +   ++l+ +ss+vg+l ++     +iv 
  EHT99032.1 373 ARQQLEDETQ-RVYHITPNDTafePEITDHLDRKAVYAEFNRLTQSLLTQSSVVGTLNQHLPADaVIVG 440
                 4445666666.999999999744477777777899999999999*************999655515554 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.9
     DUF2974 172 lqhdvfsw.eveggefvkeeeltsssklikktl 203
                 + h+ fsw +v+  + ++ ++ ++ ++++++ l
  EHT99032.1 608 MIHNYFSWwHVGVAQTAHSTRAQQVANTLNTHL 640
                 667777752677777777777777777777665 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.6e-05      0.24      22      76 ..     216     276 ..     196     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
                 E--SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEET......HHHTT- CS
       CO_dh  22 eealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvata......lkeagl 76 
                 + +l+ + k+i + ++Pl+i G+ v++    ea     +  +++ + t       l++++l
  EHT99032.1 216 VAQLEDALKLIIRKRKPLIICGGGVKYSGAGEALRAFAERYQIPFAETQagkgtlLSDHPL 276
                 55678899*******************9988888888888899999888777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4734.56
//
Query:       EHT99033.1  [L=336]
Description: myo-inositol 2-dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-26   92.3   0.1    5.6e-26   91.7   0.1    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
      5e-08   33.0   0.0    7.9e-08   32.3   0.0    1.3  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
     0.0059   16.0   0.1       0.01   15.2   0.1    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.073   13.7   0.0       0.19   12.3   0.1    1.7  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.1   1.2e-29   5.6e-26       2     120 .]       4     125 ..       3     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 1.2e-29
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH..HHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav..aesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   + ++iG+G ig++h+r  n+  ++++vva+ d++ae a+a+  + + ++++++d  ++ ++p++dav+v+++  the++++aa+eagk v++EKPla
    EHT99033.1   4 KLGVIGTGAIGQEHIRRCNNVLEGAKVVAVSDINAEGAKAAlqRLNSDADVCEDGFAVIQSPNVDAVLVTSWDPTHEAFTLAAIEAGKPVFCEKPLA 100
                   78***************************************666666666****99***************************************** PP

                   SSHHHHHHHHHHHHHHTS-.EEEE- CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgkl.vsvgy 120
                   ++ e ++++v+++ k+gk+ v+vg+
    EHT99033.1 101 MSAEGCRRIVDAEIKHGKRlVQVGF 125
                   ******************9899986 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.8e-11   7.9e-08       1     115 [.     137     239 ..     137     240 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.8e-11
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETT CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgs 95 
                     K+ I +g +Ge+++ +      +a++++++ ++    ++ ++ ++ +iH++D+l+wL+  +  +v+  +   +   +++ +d +   ++ +e+++
      EHT99033.1 137 KKVITDGDIGEPLMLH------CAHRNPTVPENY---NTEMAITNTLIHELDVLRWLTRDDYKTVQVVFPRISSKARPHLKDPQ---IVLFETQK 219
                     899************8......***********6...799***************************99999999999999999...******** PP

                     EEEEEEEECCTSSSEEEEEE CS
  GFO_IDH_MocA_C  96 gevitlesgvskglsiryvi 115
                     g  i  e  v++++++++++
      EHT99033.1 220 GIRIDVEIFVNCTYGYDIQC 239
                     ****************9987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.3e-06      0.01      38      73 ..       4      41 ..       1      56 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-06
                  EEEEES-SHHHHHHHHHHHHT..T-EEEEESSSHHHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkaf..gmkviaydrskkkee 73
                  ++G+iG+G+IGq+ ++r++ +  g+kv+a++  + + +
    EHT99033.1  4 KLGVIGTGAIGQEHIRRCNNVleGAKVVAVSDINAEGA 41
                  79*****************6545899999998865433 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.2e-05      0.19       1      58 [.       4      69 ..       4      91 .. 0.76
   2 ?   -3.6   0.0         4   1.8e+04       5      22 ..     140     157 ..     139     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
                   EEEEETTSHHHHHHHHHHHH..TTS-GGCEEEEEESSCCCHHHHHHHHC.........-EEECECHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasglla..agaqpheivvansrnpekaeelaeelg.........vkvtavdneea 58
                   k+g+iG+G +g+  ++++ +  +g    ++v +++ n e a+++ ++l+           v++++n +a
     EHT99033.1  4 KLGVIGTGAIGQEHIRRCNNvlEG---AKVVAVSDINAEGAKAALQRLNsdadvcedgFAVIQSPNVDA 69
                   79**************99762255...999989999********9*99966554444444444444444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
                    ETTSHHHHHHHHHHHHTT CS
  F420_oxidored   5 iGaGnmgealasgllaag 22 
                    i  G++ge l++ +++++
     EHT99033.1 140 ITDGDIGEPLMLHCAHRN 157
                    566999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2400.00
//
Query:       EHT99034.1  [L=298]
Description: inosose dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-24   86.4   0.2    4.2e-24   85.2   0.1    1.6  2  AP_endonuc_2    Xylose isomerase-like TIM barrel
    0.00019   21.0   0.0     0.0013   18.4   0.0    2.3  2  AP_endonuc_2_N  AP endonuclease family 2 C terminus


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.1   4.7e-28   4.2e-24       4     209 ..      36     249 ..      33     250 .. 0.85
   2 ?   -1.8   0.0      0.19   1.7e+03       1      40 [.     256     295 ..     256     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 4.7e-28
                   HHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC....... CS
  AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGt....... 93 
                    a aGf+g E+  +++++         + l+ +l+ +g++i+   ++t+f   d    ++     ++ + +++ +  ++Ga+++ +           
    EHT99034.1  36 MALAGFTGSEVGSKYPRDP--------AVLKPMLEIRGIEICNAWFSTFFAQGDK---AKT----IEGFTEHMNFLFEMGARVIGCS--Eqsksiqg 115
                   5678999999999999999........59***********************665...455....******************9998..44566665 PP

                   ....GBCTTTSGHH........HHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHH...TTTHHHH CS
  AP_endonuc_2  94 ....agagpkgsee........eawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHllia...eedvdda 175
                                         + w+r ae+ nela++a+++g++++l+ + g+ +++  +e++r++  ++++ vg+ +DtgH+++    +  + ++
    EHT99034.1 116 ttlaV--------LddkpvfndDEWQRTAEGYNELAAIAARKGMRVCLHHHMGTAIQTP-AEIDRFMAMTNDT-VGLLYDTGHIYYSegsQQAMLAV 202
                   55542........0334445559************************************.***********98.*************99999***** PP

                   HHHHHGGEEEEEE.EESS.............TTTTSSTTEESTTSSS CS
  AP_endonuc_2 176 lraladrikhvHikDakg.............dlgagrdrhvpigeGe 209
                   l+++ +ri+hvH+kD+++              +g +++ +  +g+G+
    EHT99034.1 203 LENHLPRIFHVHLKDVRDdivaevrdqhlsfLDGVKKGTFTVPGDGV 249
                   ******************97666666666666666666666666665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.19
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHT CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldel 40 
                   ++++ ++G++g ++  ++++p+ ++  e++ + rk ++e+
    EHT99034.1 256 FKILDDYGYQGWMVVEAEQDPALANPFEYAVKARKYIREH 295
                   5677889999999999999999888777777777777776 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.14   1.2e+03       2      16 ..      29      43 ..      28      44 .. 0.90
   2 !   18.4   0.0   1.5e-07    0.0013       1      23 [.     251     273 ..     251     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.14
  AP_endonuc_2_N  2 wkdifsaLrqiGYdg 16
                    +++ +s+++ +G++g
      EHT99034.1 29 FQQTVSEMALAGFTG 43
                    8899*********98 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.5e-07
  AP_endonuc_2_N   1 dwkdifsaLrqiGYdgplSiEwE 23 
                     d+k +f  L ++GY+g++++E E
      EHT99034.1 251 DFKPVFKILDDYGYQGWMVVEAE 273
                     79*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2205.99
//
Query:       EHT99035.1  [L=283]
Description: putative myo-inositol catabolic operon transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-24   84.8   0.0    7.2e-24   84.1   0.0    1.3  1  SIS        SIS domain
    1.2e-12   47.6   0.8    2.3e-12   46.7   0.0    1.9  2  HTH_6      Helix-turn-helix domain, rpiR family
    0.00072   19.6   0.0     0.0026   17.8   0.0    2.0  2  SIS_2      SIS domain
     0.0065   16.5   0.3        2.9    8.0   0.0    2.4  2  DASH_Dad3  DASH complex subunit Dad3


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   1.6e-27   7.2e-24       1     130 [.     144     270 ..     144     275 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 1.6e-27
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 lL +a+++yv+G ++s+++a++l ++l ++  +++ ++  + + +++l l++++d+vi+is s+++++ v+++el ++rga++iaITds+ spla+++d
  EHT99035.1 144 LLNDAENVYVIGLRRSFSVASYLVYALRHLERRAFLIDGLGGMFTEQLTLVNPKDVVIAISCSPYAREAVEVVELGARRGARLIAITDSQVSPLAAFSD 242
                 5899*********************************************************************************************** PP

                 EEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepetlvastksltaqlaaldalav 130
                 +++ ++++       ++s +a+l + ++lav
  EHT99035.1 243 VCFVVREAQVD---GFRSQVASLCLAQTLAV 270
                 *****999999...77777777777666665 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   5.1e-16   2.3e-12       4      73 ..      12      81 ..       9      85 .. 0.92
   2 ?   -3.7   0.1       2.9   1.3e+04      36      47 ..     260     271 ..     257     273 .. 0.69

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 5.1e-16
                HHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHH CS
       HTH_6  4 lekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLake 73
                   i+ ++e l+k  k++a yil + + +   +++ +A++a v  +t++rfa  +Gf+GF+e+k    + 
  EHT99035.1 12 QDEIRRRYETLSKRLKQVARYILDNSNSIAFDTVASIAQQADVPPSTLIRFANAFGFSGFNEMKQIFRQH 81
                568************************************************************9766665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
                 -HHHHHHHTT-- CS
       HTH_6  36 sikalAkaaavS 47 
                 ++  lA+ +avS
  EHT99035.1 260 ASLCLAQTLAVS 271
                 555688888888 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   7.1e+03      11      30 ..      16      35 ..      11      39 .. 0.68
   2 !   17.8   0.0   5.8e-07    0.0026      91     137 ..     186     230 ..     160     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                HHHHHHSHHHHHHHHHHHHH CS
       SIS_2 11 erivetqaeaiekaaeliad 30
                +r  et ++ ++++a+ i d
  EHT99035.1 16 RRRYETLSKRLKQVARYILD 35
                34447778888888887765 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5.8e-07
                 HHHHHHHHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  91 yakqilrlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 ++++ l l  ++p+Dv + iS s     +ve++e + +rg+++iA+t
  EHT99035.1 186 MFTEQLTL--VNPKDVVIAISCSPYAREAVEVVELGARRGARLIAIT 230
                 33333444..7***********************************8 PP

>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00064       2.9       1      29 [.       8      34 ..       8      61 .. 0.82
   2 !    6.5   0.0     0.002       8.9      20      51 ..     136     180 ..     109     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00064
   DASH_Dad3  1 LspleqevLdeYerLaenlktLaselkeL 29
                Ls l+ e+  +Ye+L++ lk++a  +  L
  EHT99035.1  8 LSLLQDEIRRRYETLSKRLKQVARYI--L 34
                7899*****************99877..3 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
   DASH_Dad3  20 ktLaselkeLasn.............steeildgLReLErkiglv 51 
                 ++L+++++ L+++              ++ ++  LR+LEr+  l+
  EHT99035.1 136 EQLNKTVQLLNDAenvyviglrrsfsVASYLVYALRHLERRAFLI 180
                 458888888887799********9977999**********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2190.59
//
Query:       EHT99036.1  [L=272]
Description: 5-deoxy-glucuronate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.7e-109  362.8   0.1   9.9e-109  362.7   0.1    1.0  1  KduI         KduI/IolB family
  ------ inclusion threshold ------
       0.16   10.7   0.0       0.21   10.3   0.0    1.1  1  VGCC_alpha2  Neuronal voltage-dependent calcium channel alpha


Domain annotation for each model (and alignments):
>> KduI  KduI/IolB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.7   0.1  1.1e-112  9.9e-109       3     261 .]       5     264 ..       3     264 .. 0.96

  Alignments for each domain:
  == domain 1  score: 362.7 bits;  conditional E-value: 1.1e-112
                 E--..-SCCC.-EEECTCCCCCCCCBECCCEEEECHHCHHCHGCSEEEEEEEECCEEEECCTT.EEEEE-TTSSGGG.S..EEEEE-TT--EEEEESST CS
        KduI   3 vksksaedge.lvvdvtpesagweyvgfsvlkLaagesleletedrEvcvvllaGkvtvevageefeelgeRksvFe.gkpdavYvpkgakvtitaetd 99 
                 +k k+  d++ ++++vtp++agw+yvgfs + L++g++l l+++d+E+c+vl+aG ++v++++++f ++g+R s+Fe ++p++vYvp++++v+++ae+d
  EHT99036.1   5 SKVKQ-PDNNgCIQQVTPARAGWRYVGFSSYLLKKGQTLDLKSGDSELCLVLVAGLASVTTRHASFPNIGKRLSPFErTPPYSVYVPHDDDVRVQAESD 102
                 55544.344446*************************************************************************************** PP

                 EEEEEEEEE-SS--.--EEE-CCCSEEEEESSCCCTEEEEEEESTTT---SS-EEEEEEETTT-EES-SEEE-CCEECCTEECSEEEEEEECCTTT.EE CS
        KduI 100 aevavasapaeeel.ptrliapeeveveerGkgansRqvhnilpeseaeadsLlvvevitpegnwSSYPpHkHdednepeeteleevYyfrlnppqGfg 197
                 +e+av++ap+++   p+rliape+v ve+rGkg+n+R vhnilp++++ a+sLlvvev+t+egn+SSYP+HkHd++n+++et+lee+Yy+r++p+qGf+
  EHT99036.1 103 LELAVCQAPGQGGKlPARLIAPEDVGVERRGKGQNQRLVHNILPDTQP-AESLLVVEVYTDEGNTSSYPSHKHDQENSEHETYLEETYYHRFQPEQGFA 200
                 **********98655******************************999.************************************************** PP

                 EEEEE.TTSSSEEEEEEETTEEEEE-TTB.SEEEECCCCEEEEEEEESSS...--CC-CCCCGH CS
        KduI 198 lqrvytddrsldeamavedgdvvlvpkgyhpvvaapGydlYYlnvmaGperkwkfsddpahewi 261
                 +qrvytddrslde+mav+++dvv+vp+gyhpv++ +Gyd+YYlnvmaGp r wkfs++ +h+w+
  EHT99036.1 201 MQRVYTDDRSLDECMAVYNRDVVMVPRGYHPVATLAGYDNYYLNVMAGPVRLWKFSWEHDHAWV 264
                 ***************************************************************7 PP

>> VGCC_alpha2  Neuronal voltage-dependent calcium channel alpha 2acd
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.4e-05      0.21      69     138 ..     137     207 ..     133     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.4e-05
  VGCC_alpha2  69 tseLvkrvWkkkdlkkgvlarfvatdggitrvyPksageeweedaety.essfykrsldndlyiftptlfs 138
                   + Lv+++  +++  +++l + v td g t  yP+++  + + ++ety e+ +y+r   ++++ ++ ++++
   EHT99036.1 137 NQRLVHNILPDTQPAESLLVVEVYTDEGNTSSYPSHKHDQENSEHETYlEETYYHRFQPEQGFAMQRVYTD 207
                  5789999999***************************9999999999967789999877777766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2361.17
//
Query:       EHT99037.1  [L=501]
Description: methylmalonate-semialdehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-139  464.7   0.0   3.2e-139  464.4   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0021   17.2   0.0     0.0037   16.4   0.0    1.3  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.4   0.0  3.5e-143  3.2e-139       4     461 ..      16     480 ..      13     481 .. 0.97

  Alignments for each domain:
  == domain 1  score: 464.4 bits;  conditional E-value: 3.5e-143
                 -SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
      Aldedh   4 sesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyae 102
                 +++eti+v++Patg+vi + ++++a++v +a+  A++af+aw+k+++ +Ra+i+ ++ +l+e++++ela+l++ e Gk +++a +e+++ i+v++++++
  EHT99037.1  16 ASNETIPVFDPATGKVIRELTQSSADEVAQAIYVAHAAFPAWSKTSPLRRARIMFNFKALMEQHRDELAALIVSEHGKVWSDALGELTRGIEVIEFACG 114
                 34478********************************************************************************************** PP

                 HHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh 103 laeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200
                   + l+ge  p+   g ++++  +P+Gvv+ ItP+NfP+++++w++ +ala+GNt++lKP    p  ++++ael++eaglP+gv+nvv+   ++ +e+l
  EHT99037.1 115 IPHLLKGEYSPNvGGGVDSYSLMQPVGVVAGITPFNFPAMVPLWMFPIALACGNTFILKPPALDPSASVRMAELLKEAGLPDGVFNVVHS-SNDNAEQL 212
                 ***********988**************************************************************************99.6678999* PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEE.EEHHHHHHHHHHHHHHHHT--B CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrll.vqesiydefveklveaakklkv 298
                  ++p++++vsf+Gs+ v+++i+k+a+++ krv++   +kn++iv++daDld++v+ai+ gafg+aG++C+a   ++ v ++++d+++++l+  +++l+v
  EHT99037.1 213 YKDPRIAAVSFVGSSGVAEHIYKTASAHGKRVQAFGAAKNHAIVMPDADLDATVNAIMGGAFGSAGERCMALPVVVaVGNDTADKLISRLTPLINALRV 311
                 ***********************************************************************9987637788****************** PP

                 S-TTS...TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 299 gdpld...edtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 g + +   +++++GP++s+a+++kv +y++ +++egakl+++g+ ++ ag e+gy+v  t+++nvt +m+i++eEiFGPVls++++ d + a++++N+ 
  EHT99037.1 312 GPGIQqgsDENEMGPVVSAAHQKKVLGYIDLGEQEGAKLVVDGRnHKVAGFEEGYYVGGTLFDNVTAEMTIWREEIFGPVLSIMRAPDYDSALKLVNSH 410
                 **8663446999*****************************9999999*************************************************** PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES..-BSHHHHHHHTEEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglG..reggkegleeytevkt 461
                 e+G+++++ft++  +a+++++++eaG+v++N +  + +    fgG+k+S +G  + +g++g+++yt++kt
  EHT99037.1 411 EFGNGSAIFTSNGHTAREFVQDVEAGMVGVNLPVPVPMAFHSFGGWKRSVFGalNVHGPDGVRFYTRMKT 480
                 *********************************99888889***********888899**********98 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.1e-07    0.0037      82     224 ..     132     268 ..     109     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.1e-07
        LuxC  82 ksyekaqprglvlhvlsgNvp.llpvmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeiv.qnaDvvvawG 178
                 +sy+ +qp g+v  +++ N p ++p++    +l ++n  +lk+++ dp ++++++  l++            vv  +s++++ e+        +v+  G
  EHT99037.1 132 DSYSLMQPVGVVAGITPFNFPaMVPLWMFPIALACGNTFILKPPALDPSASVRMAELLKEAGLP---DGVFNVV--HSSNDNAEQLYKdPRIAAVSFVG 225
                 489****************994589999999*************************99999886...5566777..44444444444333678899999 PP

        LuxC 179 geeaikaise.klkpgkqlikfGakvSfavvdkealeeealdkaaer 224
                 ++   + i +   + gk++  fGa +  a+v ++a    +ld+++++
  EHT99037.1 226 SSGVAEHIYKtASAHGKRVQAFGAAKNHAIVMPDA----DLDATVNA 268
                 99999999997777888888999999999999999....77776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3898.99
//
Query:       EHT99038.1  [L=459]
Description: xanthine permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-81  274.3  39.8    1.5e-81  274.1  39.8    1.1  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
      0.055   12.3   2.0       0.11   11.4   2.0    1.5  1  DUF5423          Family of unknown function (DUF5423)
        3.6    7.6   4.5        3.9    7.4   0.6    2.5  2  ApoO             Apolipoprotein O
        4.4    5.4   5.6       0.34    9.1   0.7    1.5  2  YfhO             Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.1  39.8   3.4e-85   1.5e-81       2     387 ..      21     407 ..      20     409 .. 0.95

  Alignments for each domain:
  == domain 1  score: 274.1 bits;  conditional E-value: 3.4e-85
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-..........H.HHHHHHHHHHHHHHHH...HTTT-----EEE-GGGHHHHHGGG-.........HH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalglaeelr.qlisatllasGiatllqll...ifgirlpillgssfafvtalmialGsa.....edie 86 
                      q+++ + Qh+la +++++++Pll+g algl e    +lis++llasGi+t+lq      +g ++  ++g+sfaf++ + i  G          e
       EHT99038.1  21 QAFFSASQHVLAGLVGIITPPLLIGTALGL-EAWLpYLISMSLLASGIGTFLQSNrvwGVGAGMICMQGTSFAFLG-VAISGGLWvkaqgGSPE 112
                      78999**********************998.66666*****************9988789****************.5555554466666589* PP

                      HHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSST CS
  Xan_ur_permease  87 ialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkg 180
                      +++a+l+g   va+++ +++s+++    l r+++Pvvtg v+ liG+sl+++ v +  gg+   +++ ++sl +l+l+  +l vi+lls++ + 
       EHT99038.1 113 DIMAMLFGVNAVAALVPVIVSRFID--TLKRVFTPVVTGSVIALIGISLIKVSVINWCGGQ---NAQDFASLSNLALGALTLGVIVLLSCSGNR 201
                      ***********************99..8************************999888885...56678************************* PP

                      TTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII...IIIHHH CS
  Xan_ur_permease 181 lfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkp...kpdlrr 271
                       +++ +i++gi++g+++a+  g++++ +    +++f lp +++fg   fn +l++ v++v lv ++e+vGd++a   ++g+s+++   + +l+ 
       EHT99038.1 202 WLRLSSIVVGILTGCIAAALSGKFQVHG--LGDSLFRLPALFPFGFH-FNSSLFVPVVLVSLVCIIEAVGDLTANHLISGKSITDkafSARLKG 292
                      **********************999999..5899*************.9************************************99******* PP

                      HHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS- CS
  Xan_ur_permease 272 alladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdld 365
                      ++ladGl+++++++l a+p+tt+a+n+Gv+++t+vasr v+ ++gv+lill+l+p +++ l  IP+pvlgG+++v+fg ++ +g+++l++  l+
       EHT99038.1 293 GILADGLSCMIAAMLSAFPNTTFAQNNGVIQMTGVASRFVGRYIGVMLILLALFPPFSEALRQIPTPVLGGATMVMFGCVVTAGIRILSQTALT 386
                      ********************************************************************************************** PP

                      SHHHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 366 sarnllivavslvlGlgvatvp 387
                       +r++liv+++  +Glg+  vp
       EHT99038.1 387 -RREMLIVGLAFSFGLGIESVP 407
                      .****************98776 PP

>> DUF5423  Family of unknown function (DUF5423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.0   2.4e-05      0.11      21      65 ..     150     195 ..     130     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
     DUF5423  21 ydialiaisilcivsiilwtqgsglalfaiapalaigal..gvtllv 65 
                   iali is++  vs+i w  g     fa    la+gal  gv +l+
  EHT99038.1 150 SVIALIGISLI-KVSVINWCGGQNAQDFASLSNLALGALtlGVIVLL 195
                 469*****965.69***********************9722555554 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6   0.00088       3.9      71     104 ..     120     153 ..     110     155 .. 0.86
   2 ?    0.6   0.2      0.12   5.2e+02      70      86 ..     205     221 ..     203     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00088
        ApoO  71 gyilvagLaGsilarrrsilkRvlyPlalgglaa 104
                 g+ +va+L+ +i++r    lkRv++P+++g ++a
  EHT99038.1 120 GVNAVAALVPVIVSRFIDTLKRVFTPVVTGSVIA 153
                 55589*************************9876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
        ApoO  70 lgyilvagLaGsilarr 86 
                 l  i+v+ L+G i a  
  EHT99038.1 205 LSSIVVGILTGCIAAAL 221
                 5679*********9975 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.7   7.6e-05      0.34     353     449 ..     134     229 ..     124     243 .. 0.70
   2 ?   -3.3   0.4      0.42   1.9e+03     344     406 ..     335     397 ..     301     413 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 7.6e-05
        YfhO 353 laaealkelkqlk.klkllaailllvlllliilllknkksynfltssqlllgllllllalllllllllkkkkkklvllllllvlvlelggnaylslnk 449
                  ++ +lk++++   + + +a+i +++  + +i ++  ++ ++f++ s+l lg+l l +++ll ++  ++ + ++  +++ +l  ++ ++ ++ +++++
  EHT99038.1 134 RFIDTLKRVFTPVvTGSVIALIGISLIKVSVINWCGGQNAQDFASLSNLALGALTLGVIVLLSCSGNRWLRLSS--IVVGILTGCIAAALSGKFQVHG 229
                 445566666666657777777777777778******************99999999888888886554444444..4444444455555555566655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.42
        YfhO 344 filsflllllaa.ealkelkqlkklkllaailllvlllliilllknkksynfltssqlllglll 406
                 +i+ +l+ll+ +  + + l+q+ +  l  a+++++++++ ++ ++  +++ + + + l++gl +
  EHT99038.1 335 YIGVMLILLALFpPFSEALRQIPTPVLGGATMVMFGCVV-TAGIRILSQTALTRREMLIVGLAF 397
                 555555555444134446666644444444444444444.333444344345555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3587.02
//
Query:       EHT99039.1  [L=351]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-64  217.9  41.8    2.2e-64  217.7  41.8    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.7  41.8   1.2e-68   2.2e-64       2     326 ..      14     328 ..      13     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 217.7 bits;  conditional E-value: 1.2e-68
  AI-2E_transport   2 llilvllllllalypfiselllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqn 95 
                      l+ l++l+++la + ++s++l+pll+A+++a++lnp+v++L +rg++r +a++lv+++++v++ ll+++l+    ++++++ + +p++ +  ++
       EHT99039.1  14 LIKLAMLVIILAGIRAASDILVPLLLAAFFAIVLNPLVTILMRRGLRRGMAITLVITVIFVVILLLGAVLA----SSMSEFYDLYPQLRTIMEK 103
                      7889*******************************************************************....9****************** PP

  AI-2E_transport  96 ilnelpslleelenliqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkailrelek 189
                       +  +++l    +     l+ s+++  +++++++l++l s++ s ++++++  ++l+l+++++l +  +++++++    + + r++ ++++l+ 
       EHT99039.1 104 KMLVVQHLAASIH-----LNVSTDALVQRFDPNTLMNLASVALSGFSGAMTNTVLLILTVVFMLFEVHHLPYKMRNSFVNPKIRIAGLHKALKG 192
                      ******9999996.....9*************************9999998888888887777777666666666666666************* PP

  AI-2E_transport 190 tlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegnilePklmg 283
                       +++yl  ++l++li+g+ v+  l++l v++all++++++++n+iP+iG++i+ ip++++all++++  + +v +++++++++ gn+leP++mg
       EHT99039.1 193 -VTHYLALKTLISLITGISVWLTLYLLDVKFALLWGVVAFILNFIPNIGPIIAGIPPFLQALLLNSVFDAAMVAALFTAIHMVFGNMLEPRIMG 285
                      .7******************************************************************************************** PP

  AI-2E_transport 284 krlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      ++lgl++lv++lsl+++g+l+G+vG++l+vplt++ k ++e++
       EHT99039.1 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTSITKILMETT 328
                      ***************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2458.40
//
Query:       EHT99040.1  [L=227]
Description: putative regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-20   72.6   0.1    4.3e-20   71.1   0.1    1.8  2  GntR            Bacterial regulatory proteins, gntR family
    2.7e-20   73.0  12.5    4.7e-20   72.3  12.5    1.4  1  FCD             FCD domain
    4.9e-05   23.0   0.1    0.00012   21.8   0.1    1.6  1  HTH_IclR        IclR helix-turn-helix domain
    0.00018   21.6   0.0     0.0003   20.9   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    0.00019   21.3   0.1    0.00042   20.2   0.1    1.5  1  HTH_11          HTH domain
    0.00028   20.7   0.0     0.0006   19.7   0.0    1.5  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0049   16.6   0.0      0.012   15.3   0.0    1.8  1  LexA_DNA_bind   LexA DNA binding domain
     0.0059   16.7   0.1      0.013   15.5   0.1    1.6  1  DprA_WH         DprA winged helix domain
      0.009   15.6   0.0       0.02   14.4   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0094   15.7   0.1       0.18   11.6   0.0    2.6  3  HTH_10          HTH DNA binding domain
     0.0096   15.9   0.0      0.024   14.6   0.0    1.7  1  HTH_46          Winged helix-turn-helix DNA binding
  ------ inclusion threshold ------
      0.012   14.8   0.1      0.015   14.4   0.1    1.1  1  CRISPR_Cse1     CRISPR-associated protein Cse1 (CRISPR_cse1)
      0.024   14.6   0.0      0.047   13.6   0.0    1.5  1  HTH_36          Helix-turn-helix domain
      0.025   14.6   0.0      0.059   13.3   0.0    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.032   14.2   0.0      0.064   13.2   0.0    1.5  1  MarR            MarR family
      0.062   13.2   0.0       0.16   11.9   0.0    1.7  1  MarR_2          MarR family
       0.07   13.0   0.3       0.16   11.8   0.3    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.078   13.3   0.0       0.17   12.2   0.0    1.5  1  Rrf2            Transcriptional regulator
       0.14   12.0   0.0       0.39   10.6   0.0    1.7  1  HTH_5           Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.1   4.6e-23   4.3e-20       1      64 []      11      74 ..      11      74 .. 0.99
   2 ?   -2.6   0.0       4.6   4.3e+03      31      45 ..     188     202 ..     185     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 4.6e-23
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ly+q++ ++ + I +g + pG +LP+ereLa+++gVsr++vReAL+ Le  g+v+++ g G+fV
  EHT99040.1 11 LYRQIANAIIAGIQRGDFVPGGALPPERELAKQLGVSRSSVREALIALEMTGYVTIQTGTGVFV 74
                79*************************************************************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.6
                 HHHHTS-HHHHHHHH CS
        GntR  31 aaefgVsrttvReAL 45 
                 a+e++ +++ + eA+
  EHT99040.1 188 ADEMNADHQCIAEAI 202
                 889999999999997 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3  12.5     5e-23   4.7e-20       1     124 [.      94     219 ..      94     220 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 5e-23
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr..lrrlals....sperl 93 
                 dl+++R++ E+++a +aar++++a+ ++l ++  +l++  ++++  +f+e d aFH ++ e++gn++l+e++e+l+++     +rrl  +    ++  +
  EHT99040.1  94 DLLQAREAYESLLAGMAARNGSEAQRERLMAMSISLQQFNENDA--AFIEQDKAFHLLISEMSGNDLLREMMENLWNKRDSahFRRL--ErhyaDNTFA 188
                 799***********************************988655..5*******************************998444444..34588***** PP

         FCD  94 eeslaeHraildAirardadaAraamrrHle 124
                 +e++a+H+ i++Ai  +d++ A+aamr+Hl+
  EHT99040.1 189 DEMNADHQCIAEAIVGGDEQVAQAAMRAHLQ 219
                 *****************************98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.3e-07   0.00012      22      49 ..      38      65 ..      32      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-07
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyve 49
                +elA+++g+++S+v+  L  L+  Gyv+
  EHT99040.1 38 RELAKQLGVSRSSVREALIALEMTGYVT 65
                69************************96 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.2e-07    0.0003      25      56 ..      37      68 ..      31      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.2e-07
                    HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 25 tkdlaerLnvspssVsemlkkLekdGyveyek 56
                      +la+ L+vs ssV e l  Le  Gyv  + 
      EHT99040.1 37 ERELAKQLGVSRSSVREALIALEMTGYVTIQT 68
                    579*************************9876 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   4.4e-07   0.00042      20      47 ..      39      67 ..      37      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.4e-07
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelg.vpIe 47
                eLA++L+vSr+ vr  + aLe++g v I+
  EHT99040.1 39 ELAKQLGVSRSSVREALIALEMTGyVTIQ 67
                9***********************66665 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.3e-07    0.0006      26      58 ..      38      70 ..      36      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.3e-07
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgr 58
                +e+a++lgv+rs+v e+L  Le  G+V+++ g+
  EHT99040.1 38 RELAKQLGVSRSSVREALIALEMTGYVTIQTGT 70
                79***************************9987 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.012      26      61 ..      35      69 ..      13      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                   --HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG CS
  LexA_DNA_bind 26 PsireiaralglkSpsaveehLkaLerKGyierdpg 61
                   P  re+a++lg++  s+v e L aLe  Gy+ ++ g
     EHT99040.1 35 PPERELAKQLGVS-RSSVREALIALEMTGYVTIQTG 69
                   6689*******97.9****************99877 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.4e-05     0.013      30      60 ..      39      69 ..      36      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
     DprA_WH 30 qLvrrtglpaaevsaaLleLELaGlverlpG 60
                +L++++g++ ++v  aL+ LE+ G+v+ + G
  EHT99040.1 39 ELAKQLGVSRSSVREALIALEMTGYVTIQTG 69
                79************************97665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-05      0.02      21      48 .]      38      65 ..      36      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlIk 48
                reLA++lg+S+s v++ l  Le  G+++
  EHT99040.1 38 RELAKQLGVSRSSVREALIALEMTGYVT 65
                8*********************999996 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00019      0.18      27      44 ..      38      55 ..      37      60 .. 0.90
   2 ?   -3.2   0.0       8.3   7.9e+03      35      51 ..     150     166 ..     147     167 .. 0.80
   3 ?    0.8   0.0      0.45   4.3e+02      35      52 ..     209     226 ..     206     227 .] 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
      HTH_10 27 keLAkelGIskstlsehL 44
                +eLAk+lG+s+s++ e L
  EHT99040.1 38 RELAKQLGVSRSSVREAL 55
                69************9988 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.3
      HTH_10  35 IskstlsehLrkaeskl 51 
                 Is+++  + Lr+ +++l
  EHT99040.1 150 ISEMSGNDLLREMMENL 166
                 88888889999888776 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.45
      HTH_10  35 IskstlsehLrkaeskli 52 
                 ++++++  hL+ ++++l+
  EHT99040.1 209 VAQAAMRAHLQHVQQRLL 226
                 7889999*******9997 PP

>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.5e-05     0.024      34      67 ..      45      79 ..      40      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
      HTH_46 34 nLSrSsimkvLseLkkggyIeierGkLvki.nkLP 67
                 +SrSs+ + L +L   gy++i+ G  v + ++LP
  EHT99040.1 45 GVSRSSVREALIALEMTGYVTIQTGTGVFVaQTLP 79
                68**********************99888878888 PP

>> CRISPR_Cse1  CRISPR-associated protein Cse1 (CRISPR_cse1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.6e-05     0.015     322     445 ..      39     169 ..       3     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                  HHCCCCCCHHC......EEEEEEEEEEETTEEEEEEEEEEEEECHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSHH.......H CS
  CRISPR_Cse1 322 elkrelgeree......irlrvfGlaydqakvrdwveetlplpaalledkealreaveeaveaaeevaralrsavkaaakellkkgkkka.......g 406
                  el+++lg +++      i l+++G+++ q     +v  tlp p+a+  d e++   ++++++a e+  + l +++    + + +++++++        
   EHT99040.1  39 ELAKQLGVSRSsvrealIALEMTGYVTIQTGTGVFVAQTLPQPSAVK-DTEHFS--LQDLLQAREAYESLLAGMA----ARNGSEAQRERlmamsisL 129
                  44444443333566789********999****************997.899999..9999999999999999999....444444444448999**98 PP

                  HHHHHHHHHHHHHHHHHHHHHHCCCCCS..HCTHHHHHHH CS
  CRISPR_Cse1 407 dasaaraafwaalegpfrellaalgpddd.aaealkawrk 445
                  ++++  +a++ + +++f+ l+++++ +d  ++  ++ w+k
   EHT99040.1 130 QQFNENDAAFIEQDKAFHLLISEMSGNDLlREMMENLWNK 169
                  8888888888899***********9888776666677766 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     5e-05     0.047      25      55 .]      34      64 ..      30      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5e-05
      HTH_36 25 fpsqetlakrlglsknTvsraikeLeqlGyi 55
                 p  + lak+lg+s+++v+ a+  Le +Gy+
  EHT99040.1 34 LPPERELAKQLGVSRSSVREALIALEMTGYV 64
                566678***********************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.3e-05     0.059      25      54 ..      38      69 ..      13      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-05
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE..ET CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis..rg 54
                +elA  lG++r++v  +l +L+  g+++  +g
  EHT99040.1 38 RELAKQLGVSRSSVREALIALEMTGYVTiqTG 69
                79***********************9995334 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.8e-05     0.064      20      48 ..      37      65 ..      32      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-05
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 20 vseLakklgvskstvtrvldrLekkGlie 48
                  eLak+lgvs+s+v ++l +Le  G+++
  EHT99040.1 37 ERELAKQLGVSRSSVREALIALEMTGYVT 65
                469************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.16      25      56 ..      38      69 ..      31      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                +ela+ lg+s+s+v  +l  L+  G+v+ ++g
  EHT99040.1 38 RELAKQLGVSRSSVREALIALEMTGYVTIQTG 69
                59*************************98876 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00017      0.16      21      41 ..      38      58 ..      36      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
  HTH_AsnC-type 21 aeLAervGlSestvlrRvrrL 41
                   +eLA+++G+S+s v++ + +L
     EHT99040.1 38 RELAKQLGVSRSSVREALIAL 58
                   79************9976655 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00019      0.17      29      61 ..      38      70 ..      31      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00019
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGk 61
                +e+a++ ++s+s ++  l  L+  g+v+ + G 
  EHT99040.1 38 RELAKQLGVSRSSVREALIALEMTGYVTIQTGT 70
                69******************************8 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00041      0.39      20      45 ..      39      64 ..      38      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
                HHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5 20 elaeelglsqstvShHLkkLreaGLV 45
                ela++lg+s+s v++ L +L+  G+V
  EHT99040.1 39 ELAKQLGVSRSSVREALIALEMTGYV 64
                9********************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1657.17
//
Query:       EHT99041.1  [L=394]
Description: mannonate hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.9e-146  487.4   0.0   2.2e-146  487.2   0.0    1.0  1  UxuA          D-mannonate dehydratase (UxuA)
      2e-09   37.2   0.0    4.6e-09   36.0   0.0    1.6  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.065   13.5   0.0    2.0  2  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> UxuA  D-mannonate dehydratase (UxuA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.2   0.0  3.7e-150  2.2e-146       1     349 [.       1     388 [.       1     389 [. 0.99

  Alignments for each domain:
  == domain 1  score: 487.2 bits;  conditional E-value: 3.7e-150
                 S-BEEE---T.T-SS-HHHHHHH.T--EEEE--TTS-TTS---HHHHHHHHHHHHHTT-EEEEEE-----HHHHHT-TTHHHHHHHHHHHHHHHHHTT- CS
        UxuA   1 meltlrwygeeddpvsleeirqipGvkgvvsalhdipagevWekeeilklkeeiekagltlevvesvpvhediklgteerdryienykqtirnlakiGv 99 
                 me t+rwyg+ +dpvsl++ rq+ G++g+v+alh+ip+g+vW+++ei+++++ + ++glt++vves+pvhe+ik++ +++ ryi ny+q+irnla +G+
  EHT99041.1   1 MEHTWRWYGP-NDPVSLDDARQA-GATGIVTALHHIPNGDVWPVAEIKARQALLAEKGLTWSVVESIPVHESIKTQRGDYSRYITNYQQSIRNLAACGI 97 
                 99********.************.*************************************************************************** PP

                 -EEEE---SS--S--SEEEEE-TTS-EEEEE-HHHHHHHHHHTT--TTGGGGS-.............................-TT-S---.HHHHHHH CS
        UxuA 100 kvvCYnfmpvldWtrtdleykledgskalrfdkkeiealelkilrrkeaekeyt.............................lPgaeeer.ldelrel 168
                 ++vCYnfmpvldWtrtdl+ +l+dg+kalrfd+++++a+el +l+r+ aekey+                             lPgaee++ l++++ +
  EHT99041.1  98 DTVCYNFMPVLDWTRTDLAWTLPDGAKALRFDADAFAAFELYLLKRPGAEKEYSpaeqqaaaacfaamneeekatlvrniiagLPGAEEGYtLEQFQAQ 196
                 *************************************************************************************************** PP

                 HGCCTT--HHHHHHHHHHHHHHHHHHHHHHT-EEEE---SSSS-BTTB--SSSSHHHHHHHHHH--STTEEEEEEHHHHTTSTT--HHHHHHHHGGGEE CS
        UxuA 169 leaykkideeklrenlayFlkeiiPvaeevgvklaihPDDPPlpifGlpRivstkedlqrlldlvdspangitlCtGslgaradndlvemikefadriy 267
                 l++y+ id++ lre++a Fl++i+Pvaeevg+kla+hPDDPP+pi+GlpRivst+ed+q+l ++vds  ng+ +CtGs+g+r dn lv m ++fadri 
  EHT99041.1 197 LAQYDGIDKARLREHMATFLRAIVPVAEEVGIKLAVHPDDPPRPILGLPRIVSTQEDMQWLKETVDSLHNGFCFCTGSYGVRDDNPLVTMAETFADRIN 295
                 *************************************************************************************************** PP

                 EEE--EEEE-SSTT-EEEE-TTSSSS-HHHHHHHHHHHHHHH.........-EE-----B-GGGG..--STT--HHHHHHHHHHHHHHHHHHH CS
        UxuA 268 FahlRnikreedeksFveaahleGsvdlaevvkalleeeyrr.........ylRpDhgrlllddk..klrPGYslidRllgiaylrGlleale 349
                 F+hlR +kre +++sF+eaahl G+vd++ v+k +l ee rr         ++RpDhg+++ldd   +++PGYs+i+Rl+g+a+lrG++ al+
  EHT99041.1 296 FVHLRATKREANPNSFHEAAHLAGDVDMVGVIKVILAEEQRRrragnlraiPMRPDHGHQMLDDLhkRTNPGYSAIGRLKGLAELRGVEVALK 388
                 ************************************9999999*********************9889*********************9987 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   7.7e-13   4.6e-09       3     192 ..      18     303 ..      16     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 7.7e-13
                   HHHHCT-SEE..EEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSE..EEEEBCC.. CS
  AP_endonuc_2   3 aaaeaGfdgv..ElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapl..lvlhpGt.. 93 
                    a++aG++g+   l+  +  +v++   +e+++ +++l+e gl+ ++++  + +++  ++ ++    + + ++++ i+  aa+G+++   +++p    
    EHT99041.1  18 DARQAGATGIvtALHHIPNGDVWP--VAEIKARQALLAEKGLTWSVVESIPVHESIKTQRGDYS--RYITNYQQSIRNLAACGIDTvcYNFMPVLdw 110
                   566667666622233333344443..68999999999999999777777666666666555554..88*****************9445666666** PP

                   ......................................................................................GBCTTTSGHHH CS
  AP_endonuc_2  94 ......................................................................................agagpkgseee 104
                                                                                                           ++++ +++ 
    EHT99041.1 111 trtdlawtlpdgakalrfdadafaafelyllkrpgaekeyspaeqqaaaacfaamneeekatlvrniiaglpgaeegytleqfqaqLAQYDGIDKAR 207
                   **************************************************************************************66********* PP

                   HHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC.......HHHHHHHHHHTTTTEEEEEEHHHHHHH.TTTHHHHHHHHHGGEEEEEE.EES CS
  AP_endonuc_2 105 awerlaeslneladyaekegvklalEtlagsgvelgd.......eelarlldavdspnvgvclDtgHllia.eedvddalraladrikhvHikDak 192
                    +e++a  l++++++ae++g+kla+++ +++   lg        e+++ l + vds + g+c+ tg +  +  +++ ++ +++adri +vH+  +k
    EHT99041.1 208 LREHMATFLRAIVPVAEEVGIKLAVHPDDPPRPILGLprivstqEDMQWLKETVDSLHNGFCFCTGSYGVRdDNPLVTMAETFADRINFVHLRATK 303
                   ********************************87777**********************************99999***************95544 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.67     4e+03      20      45 ..      17      48 ..      16      50 .. 0.71
   2 ?   13.5   0.0   1.1e-05     0.065      11      52 ..     158     199 ..     155     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.67
                  HHHHHHHHHHHHHHHTTSS-H......HHHHH CS
  Catalase-rel 20 eeekerlvnniafelskvede......eiqer 45
                  +++++  ++ i+++l +++++      ei+ r
    EHT99041.1 17 DDARQAGATGIVTALHHIPNGdvwpvaEIKAR 48
                  57788888889999999886655555566665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.1e-05
                   HHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
  Catalase-rel  11 agllyrsmseeekerlvnniafelskvedeeiqerqlehfak 52 
                   a + +  m+eeek+ lv ni + l ++e++   e+  +++a+
    EHT99041.1 158 AAACFAAMNEEEKATLVRNIIAGLPGAEEGYTLEQFQAQLAQ 199
                   6678999********************977666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2881.01
//
Query:       EHT99042.1  [L=526]
Description: hypothetical protein CKS_0949 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-63  213.8   0.0    3.3e-63  213.4   0.0    1.2  1  EAL        EAL domain
    9.1e-31  107.0   0.1    1.3e-30  106.5   0.1    1.2  1  CSS-motif  CSS motif domain associated with EAL


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.0   3.7e-67   3.3e-63       2     238 .]     270     503 ..     269     503 .. 0.98

  Alignments for each domain:
  == domain 1  score: 213.4 bits;  conditional E-value: 3.7e-67
                 HHHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-C CS
         EAL   2 ealrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspaslade 100
                 +++r+a++ ++++++yQP ++ + ++++g+eallrw  p+g+ ++p++f+++ae +g++  ++r++++ +++d+r+++   +++++l+in+ +++l+++
  EHT99042.1 270 DDIRRAIRSGQFSVHYQPTYSYALKRCTGAEALLRWTLPNGDSVRPDTFISAAEAEGMIIPVTRHLMDLIVEDARQWK--TNPGFHLAINVAADHLQHP 366
                 579**************************************************************************6..389**************** PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +f++e+++++++  + + +L+le+te++l+++ + ++ + l+rLra+G ++a+ddfgtg+ slsyl+ + +d++K+dr +++ +e+ + +  +++a+i+
  EHT99042.1 367 DFVDEMLSFAEKMAVTEFNLTLELTERSLIKEGNVVA-DKLERLRAAGMKVAIDDFGTGHCSLSYLQTFALDYLKIDRGFINAIESLDGETPVLDAIIS 464
                 **********999999999*****************9.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 l+++l+++v+ egVet  q+  l++ g+ +vQGy++++p
  EHT99042.1 465 LSHKLKLQVLGEGVETALQFHYLQQHGVSFVQGYFYARP 503
                 *************************************99 PP

>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.1   1.5e-34   1.3e-30       3     198 ..      40     229 ..      38     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 1.5e-34
   CSS-motif   3 qqldalaeralerledvldqadqaldelqplagrpCseahlaaLrrivafspyvrdiglvkdgrlyCSSlwGeldlplpllppd..ltsrdgvrlwllr 99 
                 +q   +a  +l ++e+++d+a++++  l+++ ++pC ++   aLr + + +py+r +g +++++++CSS++G  + +l  +     +++r++ + + lr
  EHT99042.1  40 EQQINTAATLLSQAEKISDNAWSMIAWLRQYEEQPCEQIE-HALRLNGTLYPYFRGLGTLENDVITCSSAYGNKPSTLKAMIGVtpPVARKDGWSLSLR 137
                 677789999*******************************.********************************9977776666688899999999999* PP

   CSS-motif 100 gtplvpdrpalvlrrgnyavvispgvfidgqylpelllavsssdgeqlalvvgpaallldgrvlslaeliasearssgalyvrakserypltvvvyapp 198
                 g+  vpdrpa++  r+  a+ +++ v+++gqyl ++++a++s++ +q++++++++a + +g+ + +++  +s++       +ra+s+ryp++v++ ap 
  EHT99042.1 138 GSYSVPDRPAVIFVRNLTAGRAVW-VMVEGQYLIDFMSALGSTHDYQITMRFSDGASIVSGEHDFTGDTGPSPQL------YRATSSRYPISVTLLAPG 229
                 ********************7775.47*************************99999988888888888888888......**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3895.57
//
Query:       EHT99043.1  [L=74]
Description: hypothetical protein CKS_0950 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 628.22
//
Query:       EHT99044.1  [L=501]
Description: proline/glycine betaine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-69  234.0  23.2    3.1e-69  234.0  23.2    1.8  2  Sugar_tr       Sugar (and other) transporter
    2.5e-36  125.3  39.5    5.2e-26   91.4  15.5    2.1  2  MFS_1          Major Facilitator Superfamily
    6.9e-22   77.4   9.9    1.2e-21   76.7   9.9    1.4  1  Osmo_CC        Osmosensory transporter coiled coil
     0.0021   16.6   7.2     0.0021   16.6   7.2    2.2  2  TRI12          Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.025   14.7   0.0    1.4  1  TssO           Type VI secretion system, TssO
      0.033   14.7   1.4       0.07   13.7   1.4    1.5  1  MerR-DNA-bind  MerR, DNA binding
      0.034   14.1   0.0      0.034   14.1   0.0    2.0  1  DUF1043        Protein of unknown function (DUF1043)
      0.047   13.7   1.0       0.11   12.6   1.0    1.5  1  DUF1192        Protein of unknown function (DUF1192)
      0.071   13.1   0.8       0.12   12.3   0.8    1.3  1  Prefoldin_2    Prefoldin subunit
       0.17   11.7   3.0       0.24   11.2   3.0    1.1  1  ERM            Ezrin/radixin/moesin family
        0.2   11.7   0.8        0.3   11.1   0.8    1.2  1  FlxA           FlxA-like protein
       0.29   10.8   2.2       0.59    9.8   2.2    1.4  1  Med4           Vitamin-D-receptor interacting Mediator subuni
       0.44   11.1   2.9        0.9   10.1   2.9    1.5  1  DUF1843        Domain of unknown function (DUF1843)
        0.7    9.8   3.7        1.6    8.7   3.7    1.6  1  Prefoldin      Prefoldin subunit


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0  23.2   2.4e-72   3.1e-69       3     447 ..      29     449 ..      26     454 .. 0.95
   2 ?   -0.6   0.2      0.35   4.5e+02     203     236 ..     456     490 ..     453     497 .. 0.79

  Alignments for each domain:
  == domain 1  score: 234.0 bits;  conditional E-value: 2.4e-72
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 + a+lg  ++++d+gv+g++++ l+++++  +s   ++ ++      +++s+ ++++ +G+lf+g+lgd++GR+k+l i++v+++++++++++++++  
  EHT99044.1  29 TAASLGNAMEWFDFGVYGFVAYALGKVFFPDASPGIQMIAA-----LATFSVPFLIRPLGGLFFGMLGDKYGRQKILSITIVIMSVSTFCIGLIPSYas 122
                 5567777******************9999999999998887.....9************************************************99** PP

                 ...SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 100 ...nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilllf 190
                    ++  +l+++++  G++vG++++ ++++++E++p+++Rg+++s+ +++ ++G++++a++ + ++++ +     ++gwr++++l+l + ++ l+l++ 
  EHT99044.1 123 igiWAPILLLLAKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIIGeenflEWGWRLPFFLALPLGIIGLYLRHA 221
                 *****************************************************************8777779*************************** PP

                 S---HHHHHHTT-HH.HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-TH CS
    Sugar_tr 191 lPESPrylvekgkee.eakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsk 288
                 l+E+P +  +++k e  ++e+l++     +++ +++e++++++++                    ll +++l i++++t+++ ++y+++++ +nl++s+
  EHT99044.1 222 LEETPAFQQHVDKLEqGDREGLRD-----GPKVSFKEIATKHWRS--------------------LLACIGLVIATNVTYYMLLTYMPSYLSHNLHYSE 295
                 ***************899999999.....****************....................999******************************* PP

                 H...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 289 s...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 +   l++ +i++ + fv+ +++ +l+drfGRR++++lG++  +++++     +++++++      ++i++ +l +a+    +++v++  ++ +fp+++R
  EHT99044.1 296 DhgvLIIIAIMMGMLFVQPVMG-MLSDRFGRRPFVILGSIALMVFAIPA---FMMINSG----VLGMIFAGLLLLAVILNAFTGVMASSLPAMFPTHIR 386
                 ***99999999***********.***************98777666555...5666666....89********************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCC CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtlee 447
                 ++ala a+++++l+  l+ +   +++ea ++ y+ +++ ++++++ +++ + + et++++l+ 
  EHT99044.1 387 YSALASAFNISVLIAGLTPTAAAWLVEATNNLYMPAYYLMVVAVVGLITGLYMKETANKPLKG 449
                 ***********************************************************9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.35
                 -HHHHHHHHHH.HHHCHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 203 keeeakevlak.lrgeedadrelaeekdsleaeqe 236
                 + eea+e+l++  ++ e++ +++++e++ lea+++
  EHT99044.1 456 DLEEAREILQEhHDNIEQKIEDIDAEIARLEAKRK 490
                 579********455559999999999999999855 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4  15.5     4e-29   5.2e-26      37     254 ..      72     309 ..      31     312 .. 0.75
   2 !   39.7  20.4   2.2e-13   2.8e-10      39     182 ..     303     448 ..     300     478 .. 0.76

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 4e-29
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa....sslw.l..llvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                  +++ +l   ++ l++G l+d++Gr ++l +++++++++ ++++l++    +++w +  ll++ + qG+  g+ ++++ +++a+++p+++rg++ ++l 
  EHT99044.1  72 TFSVPFLIRPLGGLFFGMLGDKYGRQKILSITIVIMSVStFCIGLIPsyasIGIWaPilLLLAKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLD 170
                 45557777799****************************44444431343667775555777777********************************** PP

       MFS_1 128 agfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeee.....kgtgpaplvpawkallkdpvlw... 210
                  g+ +G++lg+++  l+++ +g        Wr++f+++ ++++++  l   l  + + +++ + +++++     +g    p v+ +k++ ++   w   
  EHT99044.1 171 FGSIAGFVLGAGVVVLISTIIGeenflewgWRLPFFLALPLGIIG--L--YLRHALEETPAFQQHVDKLeqgdrEGLRDGPKVS-FKEIATKH--Wrsl 262
                 ********************************************9..4..4444444444444444444444888888888888.9*******..9877 PP

       MFS_1 211 .illialllfffgfsglltllplylqevlgls...glllaglllalla 254
                  +++  ++ + + +++llt++p+yl   l++s   g +l+ +++++++
  EHT99044.1 263 lACIGLVIATNVTYYMLLTYMPSYLSHNLHYSedhG-VLIIIAIMMGM 309
                 7666666666789999****************7775.33333333333 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 2.2e-13
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll..fa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                  + + g+++ ++++G lsdrfGrr+ v+l +++l++++  +++  ++ s++  +++++ +l ++   a++ ++a+ + ++fp   r +a++ +   + l
  EHT99044.1 303 IAIMMGMLFVQPVMGMLSDRFGRRPfVILGSIALMVFA--IPAfmMInSGVLgMIFAGLLLLAVILNAFTGVMASSLPAMFPTHIRYSALASAFNISVL 399
                 566889*******************6666666666666..5552235799999******************************9999999999999999 PP

       MFS_1 133 Gailgpllggllasslg.Wravfyilaivsllafvlfllllpeepperkrk 182
                  a l+p ++++l+++ +    + y l +v++++++    l++ e  +++ k
  EHT99044.1 400 IAGLTPTAAAWLVEATNnLYMPAYYLMVVAVVGLI-T-GLYMKETANKPLK 448
                 99999********7777744555555555555533.2.5555544444444 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   9.9     9e-25   1.2e-21       1      46 []     455     500 ..     455     500 .. 0.99

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 9e-25
                 XXXXXXXXXXXXXXTHHHHHHHHHHHHHHHHHHHHHHHHHH---XX CS
     Osmo_CC   1 SdreEAkelLqehYdnIEqkvedideeIaaLeekRqrLvdqHPkle 46 
                 Sd eEA+e+Lqeh+dnIEqk+edid+eIa+Le+kR++Lv+qHP+++
  EHT99044.1 455 SDLEEAREILQEHHDNIEQKIEDIDAEIARLEAKRKNLVQQHPDIN 500
                 89******************************************97 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.9     0.081     1e+02      96     226 ..      85     232 ..      79     255 .. 0.60
   2 !   16.6   7.2   1.6e-06    0.0021      53     143 ..     272     364 ..     250     451 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.081
       TRI12  96 lvmgrltdrfgrrpfvil........thilglvg..aivgctatkfntllaamtllgvaagpagasplfvgelmsn.ktkflg..llivsipvvvts.g 180
                 l +g l d++gr+ ++ +        t  +gl+   a +g  a  +  lla m+      g    + +fv e   + k  f+g  l   si   v+  g
  EHT99044.1  85 LFFGMLGDKYGRQKILSItivimsvsTFCIGLIPsyASIGIWAP-ILLLLAKMAQGFSVGGEYTGASIFVAEYSPDrKRGFMGswLDFGSIAGFVLGaG 182
                 67899999999987654400001111455566541123333333.345666666544444555566689999876515668873322334443322101 PP

       TRI12 181 ....lspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlh 226
                     +s  +g+   ++  wr  f++ + +  i + l       p+f+q  
  EHT99044.1 183 vvvlISTIIGEENFLEWGWRLPFFLALPLGIIGLYLRHALEETPAFQQHV 232
                 11115778888888888888888888888888888888888888887744 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.6e-06
       TRI12  53 vvatyfvlqasasalpnil.qdvgqsensslfstl.wttgqavsilvmgrltdrfgrrpfvilthilglvgaivgc...tatkfntllaamtllgv 143
                    ty++l    + +p  l  ++  se+++++  +   +g      vmg l+drfgrrpfvil  i  +v ai       +  +  ++a + ll v
  EHT99044.1 272 TNVTYYMLL---TYMPSYLsHNLHYSEDHGVLIIIaIMMGMLFVQPVMGMLSDRFGRRPFVILGSIALMVFAIPAFmmiNSGVLGMIFAGLLLLAV 364
                 444555554...3455544256788999987766615678888889********************999998854300033344445555555555 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     2e-05     0.025      15      88 ..     425     500 ..     417     501 .] 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
        TssO  15 llFlvtvlllflivffffkssplqekeillkelerkkkfeek.qkelkkkvdsiykkIdsL.kpevnavfleneIk 88 
                 l+ +++v+l+  +  +   + pl+  +   ++le+ ++++++ ++++++k++ i+++I +L  + +n v++  +I+
  EHT99044.1 425 LMVVAVVGLITGLYMKETANKPLKGATPAASDLEEAREILQEhHDNIEQKIEDIDAEIARLeAKRKNLVQQHPDIN 500
                 6667778888866666778899999999999**999998766156799*************888899999988887 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.4   5.5e-05      0.07      32      64 ..     455     487 ..     448     492 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
                    TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  32 ppcqdvrallarklaeleeriaeLqalraeLaa 64 
                    ++ +++r++l+++ + +e++i++++a  a+L+a
     EHT99044.1 455 SDLEEAREILQEHHDNIEQKIEDIDAEIARLEA 487
                    5678999******************99999875 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.034       2      71 ..     426     495 ..     425     498 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
     DUF1043   2 liglvvGiiiGalilrltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqh 71 
                 +++ vvG+i G+ +  + n+ lk     + +le+a++ l+e+ +++e+ ++     +++l+ + ++L q+
  EHT99044.1 426 MVVAVVGLITGLYMKETANKPLKGATPAASDLEEAREILQEHHDNIEQKIEDIDAEIARLEAKRKNLVQQ 495
                 6889*********************************************999999999999999988876 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.0   8.4e-05      0.11      23      45 ..     469     491 ..     468     496 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-05
     DUF1192  23 eELeerIalLeaEIaRleaaiak 45 
                 + +e+ I++  aEIaRlea++++
  EHT99044.1 469 DNIEQKIEDIDAEIARLEAKRKN 491
                 6799***************9975 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   9.8e-05      0.12      59      95 ..     456     492 ..     451     497 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.8e-05
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  59 dkeevkeeLeerketlekeiktlekqleklekeleel 95 
                  d+ee++e L+e+++++e++i+ +  ++ +le++ ++l
   EHT99044.1 456 DLEEAREILQEHHDNIEQKIEDIDAEIARLEAKRKNL 492
                  6677777777777777777777777777777666655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.0   0.00019      0.24      22      71 ..     441     490 ..     438     496 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
         ERM  22 ekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesae 71 
                 e a++ L+ ++  a  L+e +++++e  ++ eqk +++ +ei+rl+ +++
  EHT99044.1 441 ETANKPLKGATPAASDLEEAREILQEHHDNIEQKIEDIDAEIARLEAKRK 490
                 678999***************************************98876 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   0.00024       0.3      44      78 ..     461     495 ..     442     500 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
        FlxA  44 keekkkqqqliqaQIqqlqaQIaqlqqqqaekaqe 78 
                  e  ++  + i+++I+++ a+Ia+l+++ ++  q+
  EHT99044.1 461 REILQEHHDNIEQKIEDIDAEIARLEAKRKNLVQQ 495
                 344558999****************9988775555 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2   0.00046      0.59      22      51 ..     466     495 ..     454     499 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00046
        Med4  22 eehqknearilqLraeveslDekikeivks 51 
                 e+h+++e++i+ ++ae++ l+ k k++v++
  EHT99044.1 466 EHHDNIEQKIEDIDAEIARLEAKRKNLVQQ 495
                 6899**********************9975 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.9    0.0007       0.9      26      52 .]     460     487 ..     456     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0007
     DUF1843  26 aeqqL.aeygdiasaleqLkaEIAKlEr 52 
                 a++ L + +++i++ +e   aEIA+lE+
  EHT99044.1 460 AREILqEHHDNIEQKIEDIDAEIARLEA 487
                 44444156799****************6 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.7    0.0012       1.6      73     111 ..     455     493 ..     404     496 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
                 EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  73 ksleeAiellkkkleelekqlekleeeleklkdqittle 111
                  +leeA e+l++  +++e+ +e++ +e++ l ++ ++l 
  EHT99044.1 455 SDLEEAREILQEHHDNIEQKIEDIDAEIARLEAKRKNLV 493
                 588999999999999999999999999999988887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1548  (0.0863406); expected 358.6 (0.02)
Passed bias filter:                      979  (0.0546043); expected 358.6 (0.02)
Passed Vit filter:                       199  (0.0110993); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 3287.29
//
Query:       EHT99045.1  [L=325]
Description: porphobilinogen synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.4e-134  447.0   0.8   3.9e-134  446.8   0.8    1.0  1  ALAD          Delta-aminolevulinic acid dehydratase
  ------ inclusion threshold ------
      0.096   12.1   0.1         14    5.0   0.0    2.3  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> ALAD  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.8   0.8  4.3e-138  3.9e-134       2     316 ..       8     321 ..       7     322 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.8 bits;  conditional E-value: 4.3e-138
                 --GGGGGSSHHHHHHC-S----GGGEEEEEEEESS-SS-EE-TTSTT-EEEEGGGHHHHHHHHHHTT--EEEEEEE-SS-BSS-GGGGSTTSHHHHHHH CS
        ALAD   2 krlrrlrksealrelvretrlsasdlilplfvkegeeekeeiksmpgvyrlsvdelvkeveelvklgikavllFgvpeekdeegsealnedglvqrair 100
                 +r+rrlr+s+ +r++++e++ls +dl lp+fv+eg +  ++i++mpgv r++ ++l++e+e+++++gi++v+ Fg+ ++ d++gs+a+ne+glv r+ r
  EHT99045.1   8 QRPRRLRASASMRAMFQESTLSINDLALPIFVEEGVDDYKDIQAMPGVRRIPEKRLAHEIERIARAGIRSVMTFGISHHTDATGSDAWNENGLVARMSR 106
                 79************************************************************************************************* PP

                 HHHHH-TTSEEEEEE-STTTBSS-SSSEEESS.EEHHHHHHHHHHHHHHHHHCT-SEEEE-S--TTHHHHHHHHHHHTT-TT-EEB---EEB--CGGHH CS
        ALAD 101 aikeevpelvvitDvclceytshGhcgileekevdndetlellakvavsqaeaGadivapSdmmDgrvaaireaLdeagfeevailsYsaKyaSafYgP 199
                   k++vpe++v++D+c+ceytshGhcg+l ++ vdnd+tl  l k+av+ a aGad++apS  mDg+v+air+aLd+agf+++ai+sYs+K+aS+fYgP
  EHT99045.1 107 ICKDTVPEMIVMSDTCFCEYTSHGHCGVLCDHGVDNDATLINLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFTQTAIMSYSTKFASSFYGP 205
                 *****************************9999****************************************************************** PP

                 HHHHHT---S.S--TTTSB-TT-HHHHHHHHHHHHHTT-SBEEEES-TTGHHHHHHHHTT-SS-EEEEE-HHHHHHHHHHHHTTSS-HHHHHHHHHHHH CS
        ALAD 200 FrdaaesapsfgdrktYqmdpansrealreveldleeGADivmvKPalaylDiirevkeefdlpvaayqvSGEYamikaaaengwldekkvvlEsllsi 298
                 Fr+aa++a  +gdrktYqm+p n+rea+re   d +eGAD +mvKPa aylDi+r+++e+++lp+aayqvSGEYamik aa++g++de++vvlEsl +i
  EHT99045.1 206 FREAAGTAL-KGDRKTYQMNPMNRREAIRESLIDAAEGADSLMVKPAGAYLDILRDIRERTELPLAAYQVSGEYAMIKFAAQAGAIDERNVVLESLGAI 303
                 ********9.7**************************************************************************************** PP

                 HHTT-SEEEETTHHHHHH CS
        ALAD 299 kRAGadliltYfakevak 316
                 kRAGadli++Yfa ++a+
  EHT99045.1 304 KRAGADLIFSYFALDLAE 321
                 **************9986 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0016        14      34     119 ..      20     110 ..       8     118 .. 0.68
   2 ?    5.0   0.0    0.0016        15       4      48 ..     156     192 ..     154     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0016
                   HHHHHHTTSEEEEEEECCCHSTCTHC..........HTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHH CS
  AP_endonuc_2  34 rkaldelglriaslslftrfgypded..........erearreesvdalkraielaaaLGapllvlhpGtagagpkgseeeawerlaeslnelady 119
                   r++++e  l i  l l+++ +  ++d           r ++     ++l ++ie+ a+ G++ + ++  +++  + gs++ + + l++++ ++++ 
    EHT99045.1  20 RAMFQESTLSINDLALPIFVEEGVDDykdiqampgvRRIPE-----KRLAHEIERIARAGIRSVMTFGISHHTDATGSDAWNENGLVARMSRICKD 110
                   55666666666666666666665555555544444444444.....78999999999999999999966566666677777777778888777765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0016
                   HHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEE CS
  AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriasls 48 
                   aa+aG+d++  + + + +v        +++r+ald++g++ +++ 
    EHT99045.1 156 AAAAGADFIAPSAAMDGQV--------QAIRQALDAAGFTQTAIM 192
                   6677777777777777777........89***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2493.08
//
Query:       EHT99046.1  [L=158]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-16   59.4   0.0    4.3e-16   58.9   0.0    1.3  1  HTH_18    Helix-turn-helix domain
    1.7e-14   53.5   0.2    6.4e-07   29.3   0.0    2.2  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
     0.0027   18.0   0.0     0.0028   17.9   0.0    1.1  1  DUF362    Domain of unknown function (DUF362)
  ------ inclusion threshold ------
      0.037   14.1   0.1       0.18   11.9   0.0    2.1  3  HTH_3     Helix-turn-helix
       0.11   12.6   0.4       0.16   12.2   0.4    1.2  1  FRG2      Facioscapulohumeral muscular dystrophy candidate 2


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.2e-19   4.3e-16       1      81 []      31     110 ..      22     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.2e-19
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +a+++g+s ++Lq+lf r+   t ++y+r+++l  +  +L +n+ +++  +A ++ F+++++F+r  ++++g+tPs  r+r
  EHT99046.1  31 IAEKAGYSKWYLQKLFSRYNDETLARYIRKKKLISCINDL-KNSRTPIINLAVKYHFESQQSFTRSLKQMMGCTPSVCRKR 110
                 699*************************************.68*********************************99997 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.8e-10   6.4e-07       1      42 []      18      59 ..      18      59 .. 0.94
   2 !   22.3   0.0   2.9e-08   0.00011       7      38 ..      73     105 ..      68     108 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                + enl+++l+i+diA+ +g+S  y+++lF+++ ++t   y++
  EHT99046.1 18 INENLDQRLSIDDIAEKAGYSKWYLQKLFSRYNDETLARYIR 59
                679*****************************9999999985 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2.9e-08
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPs 38 
                 ++  i ++A  ++f S++ F+r +k+ +G+tPs
  EHT99046.1  73 SRTPIINLAVKYHFeSQQSFTRSLKQMMGCTPS 105
                 567899**************************8 PP

>> DUF362  Domain of unknown function (DUF362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.7e-07    0.0028      38     141 ..      10     113 ..       1     149 [. 0.62

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.7e-07
                 xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxx RF
      DUF362  38 iivgdspglyvsrgka...hrevaeeagydelae.ga..diadglegedevvvpvkgkhlkke.lkiakavleaDv.iInlpklKgHal..agvtgalK 126
                 +i++ + ++ + + ++    +++ae+agy++ +  +   + +d+      +      +  kk+ ++  +++++    iInl+ +K H +  + +t +lK
  EHT99046.1  10 VIIFVTEWINE-NLDQrlsIDDIAEKAGYSKWYLqKLfsRYNDE------TLA---RYIRKKKlISCINDLKNSRTpIINLA-VKYHFEsqQSFTRSLK 97 
                 55555555322.22223346888999999996552222222222......222...22222223667777777777588887.6888653377****** PP

                 xxxxxxxxx.xxxxxx RF
      DUF362 127 nlfGcisgs.gkaeiH 141
                 +++Gc++   +k+++ 
  EHT99046.1  98 QMMGCTPSVcRKRQMK 113
                 *****99996666654 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05      0.18       8      31 ..      24      47 ..      20      53 .. 0.89
   2 ?   -1.9   0.0         1   3.6e+03      25      34 ..      53      62 ..      50      65 .. 0.65
   3 ?   -2.2   0.0       1.2   4.4e+03      14      26 ..      95     107 ..      89     109 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
                TTHHHHHHHHHHTSSHHHHHHHHT CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEn 31
                + ls+ ++Aek+G s+++++++++
  EHT99046.1 24 QRLSIDDIAEKAGYSKWYLQKLFS 47
                56899****************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                HHHHHHTTSS CS
       HTH_3 25 tisriEnGer 34
                t++r+++ + 
  EHT99046.1 53 TLARYIRKKK 62
                6777777655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
                 HHHHHHTSSHHHH CS
       HTH_3  14 eLAeklGvsrsti 26 
                  L +++G ++s  
  EHT99046.1  95 SLKQMMGCTPSVC 107
                 5788999999875 PP

>> FRG2  Facioscapulohumeral muscular dystrophy candidate 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   4.4e-05      0.16      30      77 ..     100     147 ..      83     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.4e-05
        FRG2  30 sssskessRkRkisSrdsscqgtGasladersvtlekkkrkasdegrs 77 
                  ++    +RkR+++    s ++tGa +   +  t++k k+++  + ++
  EHT99046.1 100 MGCTPSVCRKRQMKGGTDSATSTGAHPCSLCIRTPKKAKKPVYSGIND 147
                 5677889********999*********999999999999998554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1172.83
//
Query:       EHT99047.1  [L=218]
Description: uncharacterized DUF208 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-64  215.6   0.7    6.1e-64  215.3   0.7    1.1  1  QueH      Epoxyqueuosine reductase QueH


Domain annotation for each model (and alignments):
>> QueH  Epoxyqueuosine reductase QueH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.7   3.4e-68   6.1e-64       1     174 [.      19     193 ..      19     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 3.4e-68
        QueH   1 lLlhaCCapcssyvleklkeegfevtvffynpnihpeeEyekRleelkrlieelkielieedydleefleavkglekekekgeRCekCyelrLektael 99 
                 +Llh+CCapcs  v+e++ ++g+e+t++fynpnihp +Eye R+ee+ r++e++++ ++++dyd +++++++kg+e e+e+geRC++C+++r+e+ta +
  EHT99047.1  19 VLLHSCCAPCSGEVMEAMLASGIEYTIYFYNPNIHPLKEYELRKEENIRFAEKFNVPFVDADYDRDDWFKRAKGMEWEPERGERCTMCFDMRFERTALY 117
                 79************************************************************************************************* PP

        QueH 100 AkengfdaftttltiSplknaelineigeelaeey.gvkflasdfkkkegykrsielskelglYrQkYCGCvfskk 174
                 A+engf ++t+ l iS++kn+++in++g ++a++y ++++++ +++k +g  r+ie+sk+ ++Y+Q+YCGC++s +
  EHT99047.1 118 AHENGFPVITSCLGISRWKNMQQINDCGVRAAAKYpDLTYWEFNWRKGGGSARMIEISKRESFYQQEYCGCIYSLR 193
                 ****************************999987769*************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1719.08
//
Query:       EHT99048.1  [L=226]
Description: short-chain alcohol family dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-27   94.4   0.0    8.1e-27   93.9   0.0    1.1  1  adh_short        short chain dehydrogenase
    9.5e-21   74.4   0.0    1.2e-20   74.0   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    0.00023   20.7   0.0     0.0004   19.9   0.0    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
    0.00042   20.3   0.0    0.00063   19.7   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0026   16.9   0.0     0.0036   16.5   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0067   16.4   0.7      0.054   13.4   0.7    1.9  1  KR               KR domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.033   14.0   0.0    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.07   12.9   0.0       0.14   12.0   0.0    1.4  1  zf-UBP_var       Variant UBP zinc finger
       0.15   11.6   0.0       0.18   11.3   0.0    1.4  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   4.1e-30   8.1e-27       3     189 ..       7     188 ..       5     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 4.1e-30
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGGGCSHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi..tgsgpfselsee 99 
                 +lv+Gas+GIG+a+++++++  ++v+++ rs+ +      e      ++   qvD+td ++v+ +  +     ++ d++  NAG+     ++ +e++++
  EHT99048.1   7 ILVIGASRGIGLAVVNAFVAHHWQVTATYRSAIPP---QGE----PPEVDWHQVDITDTDAVKHVAVQL--SGEPYDAILINAGVygPAHQKLAETDDS 96 
                 89*************************99997777...333....455999*********999998777..55899*********988889999***** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG...TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvag...kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 e  +++ +N  +++ +++ +lp  l+q++G I  +sS+ +   ++++a  + YsAsKaa+++ltrsla+ ++ ++ +  +++PG v+Tdm  +
  EHT99048.1  97 ELMQLFPTNAAAPVRCAEILLPL-LNQQKGVIALTSSQLAslnENRSADAPLYSASKAALNMLTRSLARGVEAQNGTLLTLHPGRVKTDMGGD 188
                 **********************9.66***********9986656789999****************************************765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   6.2e-24   1.2e-20       1     180 [.      11     187 ..      11     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 6.2e-24
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga +gIG a++ a+ ++ ++v +t+++        +  e  + +  ++D+td+++v++++ ++  +    D ++ nag+  + +++++et+++e+ +
    EHT99048.1  11 GASRGIGLAVVNAFVAHHWQVTATYRSAIP-----PQGEPPEVDWHQVDITDTDAVKHVAVQLSGE--PYDAILINAGVYGPAHQKLAETDDSELMQ 100
                   999**********************99887.....5555556778**************9998875..89*************************** PP

                   HHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTT....HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeggsivnlssvgaervvpnyn....aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                    + +n+ + +++a+ +lpl++++  +++l+s +     +n +     y+a+Kaal+ ltr+lA+ + +++ +  + +pg +kT++  
    EHT99048.1 101 LFPTNAAAPVRCAEILLPLLNQQKGVIALTSSQLASLNENRSadapLYSASKAALNMLTRSLARGVEAQNGTLLTLHPGRVKTDMGG 187
                   ******************99999666666555443333333325679*************************************954 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     2e-07    0.0004       1     103 [.       7     117 ..       7     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH...T-SEEEE--S---HHHH...HHSHHHHHH...H CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee...qpdavihlAavggvaas...sedpadfie...k 90 
                 ilV+Ga+  iG a+v+a+ +++++v++  r     ++++ ++++++++d+td +a++ +  +      da++  A+v g+a++    +d +++++   +
  EHT99048.1   7 ILVIGASRGIGLAVVNAFVAHHWQVTATYRS-AIPPQGEPPEVDWHQVDITDTDAVKHVAVQLsgePYDAILINAGVYGPAHQklaETDDSELMQlfpT 104
                 8****************************99.44555667778***********999886543222788888888765554430113344444333335 PP

                 HTHHHHHHHHHHH CS
   Epimerase  91 nlqgtlnlleaar 103
                 n++  ++ +e + 
  EHT99048.1 105 NAAAPVRCAEILL 117
                 5555555555555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.2e-07   0.00063       1      68 [.      11      80 ..      11     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.2e-07
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT.....T-SEEEES- CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk.....gadaVvsal 68
                    GA+ ++G ++v+  +a+ +++vta  R++   +   + ++++  ++d+td+++++++        +da+++++
      EHT99048.1 11 GASRGIGLAVVNAFVAH-HWQVTATYRSAIPPQ--GEPPEVDWHQVDITDTDAVKHVAVqlsgePYDAILINA 80
                    9****************.6********987766..468***************99976423333556666655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.8e-06    0.0036       2      71 ..       6      95 ..       5     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.8e-06
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..............T--TTSHHHHHHHHHHH--S....EEEE------HHH..HHHSH CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre..............eldltdaeavaellkeakpd....vvvnaAAytavDk..aEsee 71
                   kilv+Ga+  +G ++++++ +++++v+a+ r+              ++d+td +av+++  + + +    +++na+ y    +  aE++ 
     EHT99048.1  6 KILVIGASRGIGLAVVNAFVAHHWQVTATYRSaippqgeppevdwhQVDITDTDAVKHVAVQLSGEpydaILINAGVYGPAHQklAETDD 95
                   79***************************9999************************998665543334488999988644432355554 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.7   2.7e-05     0.054       4     162 ..       8     161 ..       5     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------..---TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr..dklleem 100
                 l++G+  g+Gl++++  ++++  ++  + Rsa +           +    ev++ ++D++d dav+++  +++  ++p   ++  Agv     ++l+e+
  EHT99048.1   8 LVIGASRGIGLAVVNAFVAHHW-QVTATYRSAIPP----------QGEPPEVDWHQVDITDTDAVKHVAVQLS--GEPYDAILINAGVYGpaHQKLAET 93 
                 6666666666666666666654.344444552211..........1223589*****************9998..77899********97447899999 PP

                 -HHHHHHHH....TTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HH...HHHHHHHHHHHHHH CS
          KR 101 taedleqvl....apKvkGawnLhelledesldffvlfSSiagllgsagqan...YaaaNaflDalaey 162
                 ++++l q++    a+ v+ a+ L  ll+ ++  ++ l+SS  + l ++  a+   Y+a  a l+ l ++
  EHT99048.1  94 DDSELMQLFptnaAAPVRCAEILLPLLN-QQKGVIALTSSQLASLNENRSADaplYSASKAALNMLTRS 161
                 9999988864443677888888888887.5677888888877777665555444488887777777665 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.6e-05     0.033      41      56 ..       5      20 ..       1      34 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
                     SEEEEESTSSHHHHHH CS
  Eno-Rase_NADH_b 41 kkvLviGaStGYGLAs 56
                      k+LviGaS G GLA 
       EHT99048.1  5 GKILVIGASRGIGLAV 20
                     489***********94 PP

>> zf-UBP_var  Variant UBP zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.8e-05      0.14      22      50 ..     195     223 ..     193     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
  zf-UBP_var  22 pesedGlyvcLkcFlgfckkhaekhaekt 50 
                 ++s +G++  L+ F+g + +h  ++a kt
  EHT99048.1 195 EKSAEGIFTQLTMFQGRGGHHYVDYAGKT 223
                 5799******************9999887 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     9e-05      0.18       1      32 [.       7      38 ..       7     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt 32
                IlviGa+  +G +vv+a++++ ++v a  R  
  EHT99048.1  7 ILVIGASRGIGLAVVNAFVAHHWQVTATYRSA 38
                9**************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1791.03
//
Query:       EHT99049.1  [L=273]
Description: hypothetical protein CKS_0957 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2142.96
//
Query:       EHT99050.1  [L=288]
Description: putative RpiR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-08   32.7   0.1    1.5e-07   31.3   0.0    1.8  2  HTH_6     Helix-turn-helix domain, rpiR family
     0.0063   16.4   0.0      0.014   15.4   0.0    1.5  1  HTH_36    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.047   13.5   0.0    1.3  1  SIS       SIS domain


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.6e-11   1.5e-07       2      68 ..       6      72 ..       5      77 .. 0.93
   2 ?   -3.1   0.0       1.4   8.2e+03      30      43 ..     125     137 ..     113     142 .. 0.50

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.6e-11
                -HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH-- CS
       HTH_6  2 nllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselkl 68
                +ll+ki+ + ++ t+sek+i  ++l++ +++   + + +A+a + S  t+ r  +kLGfk   + k 
  EHT99050.1  6 ELLKKIEAAISQQTPSEKRISSWLLSHSEQIPFETADSIAQATGTSGITVGRYLRKLGFKNLDDVKN 72
                689********************************************************98777775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
                 ---TT--HHHHHHH CS
       HTH_6  30 dkaielsikalAka 43 
                 ++ +++s +++A+a
  EHT99050.1 125 ETFRHIS-QQIAEA 137
                 3333333.344443 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.3e-06     0.014       4      49 ..      19      62 ..      17      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-06
      HTH_36  4 spsaklllgslasfanknggcfpsqetlakrlglsknTvsraikeL 49
                +ps+k++  +l+s++  + + f + + +a+++g s  Tv r++++L
  EHT99050.1 19 TPSEKRISSWLLSHS--EQIPFETADSIAQATGTSGITVGRYLRKL 62
                799************..555************************99 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.9e-06     0.047       2      88 ..     134     220 ..     133     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.9e-06
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEES CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITd 88 
                 +a+a++++vlG+ +   ia+ +  +le ++ +v  ++ +s  + + l+  +++  vil +++ ++    +  ++a++rg+ + ++Td
  EHT99050.1 134 IAEAETVIVLGIQSTRGIANTFFSHLEYLRPRVTYADGSSGSWLESLNSESSKPYVILTDTRAYSTVARQFCRVATARGVSMALVTD 220
                 899******************************************8998889999999999999999999999**********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 2598.44
//
Query:       EHT99051.1  [L=194]
Description: D-ala-D-ala dipeptidase, Zn-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-59  200.9   0.0    4.6e-59  199.6   0.0    1.5  1  Peptidase_M15    D-ala-D-ala dipeptidase
    2.8e-07   30.4   0.2    9.7e-07   28.6   0.2    1.9  1  VanY             D-alanyl-D-alanine carboxypeptidase
  ------ inclusion threshold ------
       0.12   12.9   0.3       0.25   11.9   0.3    1.7  1  Peptidase_M15_4  D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M15  D-ala-D-ala dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.0   7.7e-63   4.6e-59       2     198 ..       4     184 ..       3     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.6 bits;  conditional E-value: 7.7e-63
  Peptidase_M15   2 saglvdlaevladveidlkYatadnvtgkalyqaariladkevalalaeaaavaaiagqqlvlwdayrpksaqdglllwavvPedklviekqvyqi 97 
                    +++lvd+a+ ++ + idlkYatadn+tg  +y +ar+l++ ++a al +++a+a +ag  l++ dayrp++aq   llw+++P++++v+    +  
     EHT99051.1   4 ETELVDIAVAFPALTIDLKYATADNITGLPIYSVARCLLHPDAAVALEKSIAIASVAGFTLLVLDAYRPQKAQ--ELLWHACPDQNYVVPLSQG-- 95 
                    799**********************************************************************..99***********988777.. PP

  Peptidase_M15  98 eaveninvatdsshsrgaaldltlrddegelvdmGsefDelseRslatakqtvepaaqrnRklLraimesgGflsysgEWWHfelpdaasawlydd 193
                               s+hsrg+a+d+tl d  g+++dmG++fDe+++ s++++++ v+ aaqrnR lL+a+m +gGf+++  EWWHfelp+aa ++l++d
     EHT99051.1  96 -----------SNHSRGTAIDVTLIDADGHILDMGTGFDEMQALSHPYHPD-VPLAAQRNRLLLNAVMFGGGFTGIATEWWHFELPEAARYPLIND 179
                    ...........99**************************************.******************************************** PP

  Peptidase_M15 194 rylef 198
                     +++ 
     EHT99051.1 180 VFTCI 184
                    99885 PP

>> VanY  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   1.6e-10   9.7e-07       3      87 ..      41     117 ..      39     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.6e-10
                 EEEHHHHHHHHHHHHHHHHTT--EEEEE----HHHHHHHH.HHHHHHHHHHHHHHHS--TTT-GGGGTSEEEEEEGGGTT.--SC CS
        VanY   3 klrkeaaealeellaaakkegielalvsgfRsverQeelfekksvkeeklkeilrvsalpGaSeHhtGlaiDisdkeaeetklee 87 
                  l+++aa ale+ +a a+ +g++l ++ ++R  + Qe l+       +++ + + v+ l   S+H+ G+aiD++  +a  + l +
  EHT99051.1  41 LLHPDAAVALEKSIAIASVAGFTLLVLDAYRPQKAQELLW-------HACPDQNYVVPLSQGSNHSRGTAIDVTLIDADGHIL-D 117
                 699*************************************.......78888899999999************9998776333.2 PP

>> Peptidase_M15_4  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   4.3e-05      0.25       7      21 ..      95     109 ..      92     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
  Peptidase_M15_4   7 lSnHsyGlAiDinpl 21 
                       SnHs G+AiD+   
       EHT99051.1  95 GSNHSRGTAIDVTLI 109
                      5**********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1647.45
//
Query:       EHT99052.1  [L=521]
Description: periplasmic-binding component of an ABC superfamily D-ala-D-a la transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-94  317.5   4.3    1.6e-94  316.9   4.3    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.9   4.3   9.2e-99   1.6e-94       1     374 [.      81     436 ..      81     438 .. 0.97

  Alignments for each domain:
  == domain 1  score: 316.9 bits;  conditional E-value: 9.2e-99
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHH CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpas 99 
                 e++++LA+s w+ sdDgk++tf+LR+++ F+DG+p++Ae+v+ sferl++ +++++ a+ +     + kve+vd++tvrftl++p+a+fl++la+  as
  EHT99052.1  81 EIEGDLAQS-WQSSDDGKVWTFTLRPDAAFADGSPVNAEAVKLSFERLMRIKQGPSEAFPA-----DMKVEVVDPHTVRFTLNTPFAPFLYTLANDGAS 173
                 6899*****.799**********************************************99.....7*******************************9 PP

                 HGC...CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTE CS
   SBP_bac_5 100 iak...kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakgl 195
                 i +    +a+ +dd+ ++ +e++ g+G+Y+l+++++gq++vl+ np++  g kp+++r+ +k+i++s+ar+++l +G++d++  +p ++ ++lk++ ++
  EHT99052.1 174 IINpavLKANAADDARGYLAEHTAGSGAYMLQRWQKGQQLVLVPNPHFT-GPKPAFKRVSVKIISESSARRLQLAKGDVDIADALPVDQFAALKKQGDV 271
                 999999788889999*********************************7.************************************************* PP

                 EEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEET CS
   SBP_bac_5 196 kvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglre 294
                 +v  + p ++vtyl++N++k+p++ +++R+A+s A D++ +v+ +l+g ++++ +++p++++g+d+   ++   ++++kA++ L++   k +       
  EHT99052.1 272 TV-MDYPALRVTYLYLNNSKAPLNQPDLRRAISWATDYQGMVQGILGGNGKQMRGPIPEGMWGYDPQAMQY--SFNMDKARAELAKLPSKPQT------ 361
                 **.*************************************************************9999987..79****************97...... PP

                 CEEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTC CS
   SBP_bac_5 295 kklkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssg 374
                     l +l++ ++p +++ia  +q++lk +Gi+v+++ + + at  er  + d+d+++++w++d++dp+ f+n+++ s +
  EHT99052.1 362 ----LSFLYSDNDPNWEPIALSMQANLKTLGINVKLEKLAN-ATMRERIGKADYDIAIGNWSPDFADPYMFMNYWFESDK 436
                 ....***********************************99.*********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 4319.81
//
Query:       EHT99053.1  [L=338]
Description: membrane component of an ABC superfamily D-ala-D-ala transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-45  153.8  12.5    4.2e-45  153.8  12.5    1.5  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       0.3   5.5e+03     157     170 ..      15      28 ..       6      32 .. 0.53
   2 !  153.8  12.5   2.3e-49   4.2e-45       1     184 [.     115     335 ..     115     336 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.3
  BPD_transp_1 157 gvlalviavlllnl 170
                   ++++++++v+ +++
    EHT99053.1  15 LLVVAGVCVITFII 28 
                   44455555555444 PP

  == domain 2  score: 153.8 bits;  conditional E-value: 2.3e-49
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf......................................vilsilghlilpviil 59 
                   g++lG+l+a++rn++ld+l+r l  ++ s+P f+l++  +++f                                      v++++l+hlilp+ +l
    EHT99053.1 115 GVPLGVLSAVYRNRWLDHLVRLLALTGISIPAFWLGLGAIVLFygklnllpgggrlddwldpstritgfylvdallegnteVFMNALQHLILPATTL 211
                   89********************************99999988999**************************************************** PP

  BPD_transp_1  60 lllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisng 156
                   +++++++++r ir+a+l++l++d++++a+a G+++++i+++++lPnal+p +t l+la+g ll gavl+e++++wpG+g  ++++i++ d+++ + g
    EHT99053.1 212 AFVHLGIVARQIRSAMLEQLSEDYIRTALASGLPKFTIVVRYALPNALIPSVTVLGLALGDLLYGAVLTETVFAWPGMGAYVVSSIQALDFPAVM-G 307
                   ***********************************************************************************************.* PP

  BPD_transp_1 157 gvlalviavlllnlvadilqrlldprvr 184
                    ++++ +a++l+nl++d+l+ ++dpr+ 
    EHT99053.1 308 FAIVVSFAYVLVNLFVDLLYLWIDPRMG 335
                   **************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2432.81
//
Query:       EHT99054.1  [L=297]
Description: membrane component of an ABC superfamily D-ala-D-ala transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-32  111.0   8.4    5.5e-32  111.0   8.4    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne
    1.2e-06   28.4   1.0    1.2e-06   28.4   1.0    3.4  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.095   8.5e+02     157     174 ..      35      52 ..      15      59 .. 0.61
   2 !  111.0   8.4   6.1e-36   5.5e-32       1     182 [.     111     292 ..     111     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.095
  BPD_transp_1 157 gvlalviavlllnlvadi 174
                   + +a+++++l l++++ +
    EHT99054.1  35 LGAAIIVLMLGLMVFSPW 52 
                   344444444444444444 PP

  == domain 2  score: 111.0 bits;  conditional E-value: 6.1e-36
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g llG l++   +++ d l+++l++++ls+Ps+vl + l        +lg +l+ ++++++++ +++yvrl r + l ++++ +veaa++ Gasrw+
    EHT99054.1 111 GSLLGCLSG-VLGGRSDALIMRLMDIMLSIPSLVLTMALA------AALGpSLFNAMLAIAIVRIPFYVRLARGQTLIVRQHTFVEAAKTFGASRWH 200
                   6799*****.******************************......9999666666***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldpr 182
                   ++  ++l+nalpp++ ++ l +g+++  a+ l f+g    lg +  +a++g +++++            ++ +a++i  + +nl+ d +q+lldp+
    EHT99054.1 201 LISWHILRNALPPLVVQASLDIGSAILMAATLGFIG----LGAQQPTAEWGAMVANGRnyvldqwwycTFPGAAILITAVGFNLFGDGIQDLLDPK 292
                   ************************************....***************999*************************************8 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   1.0   1.4e-10   1.2e-06       3      51 .]      20      70 ..      19      70 .. 0.86
   2 ?   -4.1   0.2       1.8   1.6e+04      16      20 ..     102     106 ..      99     113 .. 0.53
   3 ?    0.9   1.1     0.051   4.5e+02      23      36 ..     143     156 ..     141     172 .. 0.83
   4 ?   -1.0   0.0       0.2   1.8e+03      19      36 ..     268     285 ..     268     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.4e-10
      OppC_N  3 wqdawrrFkrNklAvvglvilllllliaifaPliaPydp..qdli.qn.llpP 51
                w++ ++  ++ +l ++g +i++l+l + +f P+++P+dp     + ++ l+pP
  EHT99054.1 20 WKRRLWMVRKSPLTLLGAAIIVLMLGLMVFSPWLVPHDPnaI--SlTDrLQPP 70
                77788889*******************************753..33333***9 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.8
      OppC_N  16 Avvgl 20 
                 Avv l
  EHT99054.1 102 AVVLL 106
                 33333 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.051
      OppC_N  23 lllllliaifaPli 36 
                 +l+++l+a+++P +
  EHT99054.1 143 VLTMALAAALGPSL 156
                 78999999999988 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.2
      OppC_N  19 glvilllllliaifaPli 36 
                 g +il++ + + +f++ i
  EHT99054.1 268 GAAILITAVGFNLFGDGI 285
                 678999999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2350.26
//
Query:       EHT99055.1  [L=328]
Description: ATP-binding component of an ABC superfamily D-ala-D-ala transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-25   90.2   0.0    2.2e-25   89.8   0.0    1.2  1  ABC_tran   ABC transporter
    2.1e-14   53.8   0.4      4e-14   52.9   0.4    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    9.2e-07   28.9   0.0    4.5e-06   26.7   0.0    1.9  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
      5e-06   26.1   0.1    8.4e-06   25.4   0.1    1.3  1  SMC_N      RecF/RecN/SMC N terminal domain
     0.0083   16.5   0.1      0.015   15.6   0.1    1.7  1  AAA_16     AAA ATPase domain
  ------ inclusion threshold ------
      0.027   14.7   0.0      0.073   13.3   0.0    1.7  2  AAA_22     AAA domain
      0.043   13.3   0.0      0.079   12.5   0.0    1.4  1  AAA_7      P-loop containing dynein motor region
      0.045   13.5   0.1      0.098   12.4   0.1    1.5  1  DEAD       DEAD/DEAH box helicase
      0.067   12.9   0.0       0.13   12.0   0.0    1.5  1  AAA_29     P-loop containing region of AAA domain
       0.11   11.4   0.0        0.3   10.1   0.0    1.5  2  HDC        Histidine carboxylase PI chain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   1.2e-28   2.2e-25       1     136 [.      25     184 ..      25     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.2e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx......... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren......... 79 
                 l+nvs+++++ge+v++vGe+G+GKS  ++l ++l        ++G+++l g+++ +      ++   +++++++qe  + l+p+ +++++         
  EHT99055.1  25 LNNVSMHINRGEIVGVVGESGSGKSVTAMLAMRLIPEhsyqiKSGKLELAGQNVLTaseaAMRKMRGNRVAMIFQEpmTALNPTRRIGKQmvdvirqhr 123
                 79***********************9888877776656777799999***99999989988999999*********98899999999999********* PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      e+++++ ++l  +++ + +++v+ + p +LSgG++qrv++a a+ ++p+ll++DEpt
  EHT99055.1 124 pvsarEANARALALLGDMQIAD-AKNVMARYPFELSGGMRQRVMIALAFSCEPDLLIADEPT 184
                 *988888888888888888888.777888999*****************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.4   2.2e-17     4e-14       1      65 []     236     300 ..     236     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.2e-17
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 +E g +++++++p HPY+++Ll++ p+  +++ +l++i g++p+l+ l++GC F++RC  a e C
  EHT99055.1 236 IESGMTETVMHSPSHPYSIGLLACSPDASEPRAPLASISGTVPNLTCLPSGCAFRERCFAAGERC 300
                 699********************************************************999999 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.31   5.5e+02       2      13 ..      38      49 ..      37      59 .. 0.89
   2 !   26.7   0.0   2.5e-09   4.5e-06     219     302 ..     128     220 ..      62     221 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.31
      AAA_21  2 nvliGpNgsGKS 13
                 +++G  gsGKS
  EHT99055.1 38 VGVVGESGSGKS 49
                689********9 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 2.5e-09
      AAA_21 219 r...........gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 r           ++ + + ++   + ++elS G+++   ++++ ++   + +ll+ DEp + L+  ++r +l+llk++++ +g+ v++ +H+  ++
  EHT99055.1 128 ReanaralallgDMQIADAKNVMARYPFELSGGMRQR-VMIALAFSCE-P-DLLIADEPTTALDVTVQRQVLRLLKQKAEaTGTAVLFISHDMAVV 220
                 334444444444666666666667789*********9.4444444444.4.9***********************8888889**********8776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   4.7e-09   8.4e-06      26     212 ..      37     231 ..      24     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.7e-09
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC....CCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrsekl....sdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevt 119
                 +  +vG+ GSGKs  +  +   L  +++ +++s kl    ++++++ +++ +++   +v+++f+++  +    ++   i ++++   +++  +  +e++
  EHT99055.1  37 IVGVVGESGSGKSV-TAMLAMRLIPEHSYQIKSGKLelagQNVLTAsEAAMRKMRGNRVAMIFQEPMTA---LNPTRRIGKQMVDVIRQHRPVSAREAN 131
                 6789********94.444444555567779**99983333467777556667777789*****999998...444555555555555555556666665 PP

                 HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-.S CS
                 xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.x RF
       SMC_N 120 kkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka.d 206
                  + ++ ll +++i            +LSgG ++ v++aL f+    +p  l + De   aLD +  ++v +llk+k +   + ++ is++  ++++  d
  EHT99055.1 132 ARALA-LLGDMQIADAknvmarypfELSGGMRQRVMIALAFSC---EPD-LLIADEPTTALDVTVQRQVLRLLKQKAEAtgTAVLFISHDMAVVSQLcD 225
                 55543.55555555445667777779**************975...555.7899********************9988744667778888777766546 PP

                 CEEEEE CS
                 xxxxxx RF
       SMC_N 207 klvgvt 212
                 +++ ++
  EHT99055.1 226 RIYVMY 231
                 666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   8.6e-06     0.015      21      63 ..      32      74 ..      21     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 8.6e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                 +r+e+v ++GesG+GKs  +  ++r + ++     +gk +  
  EHT99055.1 32 INRGEIVGVVGESGSGKSVTAMLAMRLIPEHSYQIKSGKLELA 74
                45669****************9999888777333344444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.1e-05     0.073       7      89 ..      37     122 ..      32     150 .. 0.65
   2 ?   -2.1   0.0       2.3   4.2e+03      93     127 ..     176     212 ..     160     216 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrar 89 
                 i+ v+GesG+GK++++   ++  +e++++ +      ++  v+  t+++   +k   ++++ +++++  a  + ++++ +++ + +r++
  EHT99055.1  37 IVGVVGESGSGKSVTAMLAMRLIPEHSYQIKsgklelAGQNVL--TASEAAMRKMRGNRVAMIFQEPMTA-LNPTRRIGKQMVDVIRQH 122
                 6679**************9999999999988766644333333..2222222222234555555555555.555555556666555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
      AAA_22  93 elliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                  lli DE    l+   + ++l+ L++ ++   +g+++++
  EHT99055.1 176 DLLIADEPTTaLDvtvQRQVLRLLKQKAE--ATGTAVLF 212
                 56677766555555444555665555555..55555554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05     0.079      26      66 ..      28      68 ..      21      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
       AAA_7 26 lelllknkkpvllvGptGtGKtviikdllkkldkekylslt 66
                ++++++++  v +vG++G+GK+v+++  ++ +++ +y++++
  EHT99055.1 28 VSMHINRGEIVGVVGESGSGKSVTAMLAMRLIPEHSYQIKS 68
                5788999999********************99999998765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   5.4e-05     0.098      10     153 ..      31     206 ..      23     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
                 HHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS..............................-EEEEEESSHHHHHHHHHHHHHHTT.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxx.... RF
        DEAD  10 lilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktg..............................pkalivePtreLaeqtlnnlkkfkk.... 72 
                 +i +g+ v v +e GsGK+  +++++  i  e+  + k+g                                +  + Ptr + +q+++ +++       
  EHT99055.1  31 HINRGEIVGVVGESGSGKSVTAMLAMRLIP-EHsyQIKSGklelagqnvltaseaamrkmrgnrvamifqEPMTALNPTRRIGKQMVDVIRQHRPvsar 128
                 5667888889**************999444.3345233335677788888899999999999999999996677889*************998773332 PP

                 TSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  73 yidlrvlliiggvaardqlskldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqit 153
                 +++ r+l+++g+ +  d ++++ +   ++  g  +r++  l    +   +  +l+ DE  + ld   ++++ r+l+q +++t
  EHT99055.1 129 EANARALALLGDMQIADAKNVMARYpFELSGGMRQRVMIALA---F-SCEPDLLIADEPTTALDVTVQRQVLRLLKQKAEAT 206
                 344999999999999999999943367777778888877553...1.23568889999888888888888888888876555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.4e-05      0.13      13      37 ..      26      50 ..      23      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.4e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKST 37
                ++ +++i++ +++ ++G+sGsGKS 
  EHT99055.1 26 NNVSMHINRGEIVGVVGESGSGKSV 50
                56788999777999**********4 PP

>> HDC  Histidine carboxylase PI chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   1.7e+03      66      88 ..      17      39 ..       3      41 .. 0.85
   2 ?   10.1   0.0   0.00017       0.3     134     252 ..     128     241 ..     121     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
         HDC 66 aylGqinlltassfcGlaGavwG 88
                 y G +n+l+  s+   +G+++G
  EHT99055.1 17 VYQGEVNVLNNVSMHINRGEIVG 39
                699******99999999999998 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
         HDC 134 keknrrftplPGafvvcankkvvaerPledrdlkegegygvWsvialslskdrdkaaslfiedagvygedsnee.elieflegrrkavtksiaecGkdq 231
                 +e n r  +l G   ++ +k+v+a+ P    +l  g    v  +ial++s ++d    l+i d  + + d + + ++ + l+++  a   ++  + +d 
  EHT99055.1 128 REANARALALLGDMQIADAKNVMARYPF---ELSGGMRQRV--MIALAFSCEPD----LLIADEPTTALDVTVQrQVLRLLKQKAEATGTAVLFISHDM 217
                 678889999999999999*********9...7777776666..79999988775....899999999888887779**********************9 PP

         HDC 232 evv...feriyiGfayvlvepgqi 252
                  vv    +riy+ +a +++e+g  
  EHT99055.1 218 AVVsqlCDRIYVMYAGAVIESGMT 241
                 99633369************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2401.55
//
Query:       EHT99056.1  [L=316]
Description: ATP-binding component of an ABC superfamily D-ala-D-ala transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-28  100.0   0.0    2.2e-28   99.5   0.0    1.2  1  ABC_tran         ABC transporter
    3.6e-18   65.8   0.0    7.2e-18   64.9   0.0    1.5  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    8.8e-10   38.9   0.1    5.9e-07   29.6   0.0    2.3  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    6.4e-07   29.7   0.8    5.8e-06   26.6   0.8    2.0  1  AAA_22           AAA domain
    1.9e-05   24.2   0.2     0.0018   17.7   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    2.7e-05   24.6   0.1       0.04   14.4   0.0    2.2  2  AAA              ATPase family associated with various cellul
     0.0001   22.7   0.1    0.00019   21.9   0.1    1.4  1  AAA_16           AAA ATPase domain
     0.0014   18.6   0.2     0.0026   17.7   0.2    1.4  1  RsgA_GTPase      RsgA GTPase
     0.0016   18.1   0.0     0.0042   16.7   0.0    1.7  1  AAA_25           AAA domain
     0.0051   16.2   0.1     0.0088   15.4   0.1    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0062   16.2   0.3      0.011   15.4   0.3    1.4  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.013   15.2   0.7       0.58    9.9   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
      0.021   14.0   0.0      0.035   13.3   0.0    1.6  1  NB-ARC           NB-ARC domain
      0.026   14.2   0.0      0.044   13.4   0.0    1.4  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.029   14.8   0.1       0.06   13.7   0.1    1.5  1  RNA_helicase     RNA helicase
      0.029   14.1   0.1        1.1    9.0   0.1    2.2  2  Sigma54_activat  Sigma-54 interaction domain
       0.03   14.3   0.3       0.32   11.0   0.2    2.2  2  AAA_5            AAA domain (dynein-related subfamily)
      0.064   13.2   0.1       0.14   12.0   0.1    1.7  1  NACHT            NACHT domain
      0.071   12.5   0.7        8.1    5.8   0.2    2.4  2  TniB             Bacterial TniB protein
      0.086   12.9   0.1       0.22   11.6   0.1    1.6  2  DUF87            Helicase HerA, central domain
      0.092   12.9   0.1       0.19   11.9   0.1    1.6  1  AAA_33           AAA domain
       0.11   13.0   0.2       0.22   12.0   0.2    1.4  1  Propep_M14       Carboxypeptidase activation peptide
       0.12   12.4   0.1       0.25   11.4   0.1    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
       0.12   12.6   0.0       0.61   10.4   0.0    2.1  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.13   12.2   0.0       0.24   11.3   0.0    1.3  1  Rad17            Rad17 P-loop domain
       0.19   11.5   0.1       0.37   10.5   0.1    1.5  1  PRK              Phosphoribulokinase / Uridine kinase family
       0.19   12.2   0.1       0.54   10.8   0.0    1.7  2  AAA_18           AAA domain
        0.2   12.1   0.0       0.36   11.3   0.0    1.4  1  AAA_23           AAA domain
       0.24   10.1   1.1        2.6    6.8   0.1    2.3  2  ABC_ATPase       Predicted ATPase of the ABC class
       0.32   10.7   0.2        1.7    8.2   0.0    1.8  2  AAA_15           AAA ATPase domain
        2.8    6.5   4.6        1.2    7.7   0.3    2.2  3  AAA_13           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   3.8e-31   2.2e-28       1     137 []      32     176 ..      32     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 3.8e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH............HHHTC. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx............xxxxx. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren............esdee. 84 
                 l+ +++++++ge+++ivGe+G+GKStL+kll+g+l+pt G++     dl +      ++++++++q+  ++l+p+l v +             e + + 
  EHT99056.1  32 LNGLDIQVRQGETLGIVGESGCGKSTLAKLLMGMLSPTTGQL-----DLATAAGGGQERRMQMVFQDplSSLDPRLPVWRImtepvwiqsrasE-KTRr 124
                 678999************************************.....555556677999********9999*****99999999**99987532.2222 PP

                 ..HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ..iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   +e +++   +++++ + +++ p+ +SgGq+qr+a+aral ++p++++lDEpt+
  EHT99056.1 125 alAESLAR---QVGIRPEYLDRPPHAFSGGQRQRIAIARALSSQPDIIVLDEPTS 176
                 33444444...4556668888889*****************************96 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   1.3e-20   7.2e-18       1      65 []     227     290 ..     227     290 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.3e-20
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE g ++ ++d+p+HPYT++L++svpr+ ++ +  + ++ e p  ++l++GC F+ RCp+a++ C
  EHT99056.1 227 VELGAAQHVLDSPQHPYTQLLMDSVPRIGAPLE-GAPVNTELPGNRHLPTGCFFRARCPQATSGC 290
                 8********************************.******************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0069         4       3      35 ..      46      78 ..      45     103 .. 0.69
   2 !   29.6   0.0     1e-09   5.9e-07     226     302 ..     137     211 ..     112     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0069
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltde 35
                +++G  g+GKS+L ++l ++ +  + + +l + 
  EHT99056.1 46 GIVGESGCGKSTLAKLLMGMLSPTTGQLDLATA 78
                69**************97776654444444444 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 1e-09
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++ + ++p++ +S G+++ +a++ al +++   +++++DEp + L+ ++++ +l ll el++  +   il +H+ +++
  EHT99056.1 137 RPEYLDRPPHAFSGGQRQRIAIARALSSQP---DIIVLDEPTSALDISVQAQILNLLVELQQqYNLTYILISHNVSVV 211
                 556678999**********99999999999...9********************999666665**********98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.8     1e-08   5.8e-06       9     128 ..      46     204 ..      39     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1e-08
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.....................................erpevvfvtlpsstsskdllrellralglelka 70 
                  ++GesG+GK+tl++ l+  l       +                                     +  +v     +s+++++ l++ l+r++g + ++
  EHT99056.1  46 GIVGESGCGKSTLAKLLMGMLSPT----TgqldlataagggqerrmqmvfqdplssldprlpvwriMTEPVWIQSRASEKTRRALAESLARQVGIRPEY 140
                 599*****************9643....234669**********************9988888887666666666666679***************999 PP

      AAA_22  71 ......erlsseellealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                       +    ++ + a+++al+++ +  ++++DE    l+   ++++l+ L++l+   +++++ iL+
  EHT99056.1 141 ldrpphAFSGGQRQRIAIARALSSQPD--IIVLDEPTSaLDisvQAQILNLLVELQQ--QYNLTYILI 204
                 666555222333333355556666655..********99989655************..****99998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.035        20      27      44 ..      45      62 ..      32      74 .. 0.79
   2 !   17.7   0.0   3.1e-06    0.0018     129     212 ..     133     221 ..     107     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.035
                EEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlldAi 44
                  ivG+ G+GKs l   +
  EHT99056.1 45 LGIVGESGCGKSTLAKLL 62
                469*********997655 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 3.1e-06
                 CTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 129 sagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvt 212
                 ++gi +e       ++SgG+++ +a+a  ++ q      + +lDe  +aLD +  +++ +ll e +++    +i is++  ++++++  v v+
  EHT99056.1 133 QVGIRPEyldrpphAFSGGQRQRIAIARALSSQ----PDIIVLDEPTSALDISVQAQILNLLVELQQQynLTYILISHNVSVVRHMSDRVAVM 221
                 5556555555555589******99998776543....3589*******************9997666533889***********997777665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.8e-05      0.04       3      52 ..      47      93 ..      45     102 .. 0.88
   2 !    8.2   0.0    0.0054       3.1      43     113 ..     151     209 ..     121     222 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.8e-05
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfke 52
                ++G  G+GK++lak ++  l+ +  ++++++      g +e++++++f++
  EHT99056.1 47 IVGESGCGKSTLAKLLMGMLSPTTGQLDLATAA---GGGQERRMQMVFQD 93
                68******************9999999999888...78888899998886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGG CS
         AAA  43 ekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpd 113
                  ++ r  +  a++ + +p i+++DE  +    +          v++q+l+ l +++++  +++ i+++++++
  EHT99056.1 151 GQRQRIAI--ARALSsQPDIIVLDEPTSALDIS----------VQAQILNLLVELQQQ-YNLTYILISHNVS 209
                 34444444..44455559********9999999..........899999999999885.5588888888764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   3.2e-07   0.00019      18     167 ..      38     199 ..      21     204 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.2e-07
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesa..........ipysalaqalareellrqlldeaesaeleawrekle 102
                 +vr+g  e + ++GesG+GKs+l++ l+  l+ +    +  +++g  ++ +++           p+++++++ ++   ++  ++e         r++l 
  EHT99056.1  38 QVRQG--ETLGIVGESGCGKSTLAKLLMGMLSPTtgqlDLATAAGGGQERRMQmvfqdplsslDPRLPVWRIMTEPVWIQSRASE-------KTRRALA 127
                 67777..66889****************988888555544446666666655533443333333334455555444444444444.......3333333 PP

      AAA_16 103 eala..........avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql..laaLlrlleskpl 167
                 e+la          + p+ a ++ +r + +++r+l    + ++p ++vlD+   a + s q+  l +L++l+++ +l
  EHT99056.1 128 ESLArqvgirpeylDRPPHAFSGGQRQRIAIARAL----S-SQPDIIVLDEPTSALDISVQAqiLNLLVELQQQYNL 199
                 33333333333333444444444466666666666....3.557899999998777755444425566666555365 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   4.4e-06    0.0026      95     137 ..      37      80 ..      22      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.4e-06
                  HHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--------- CS
  RsgA_GTPase  95 ellkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrG 137
                   ++++ +t  +vG+SG GKStL + l++ l+  tg++  ++  G
   EHT99056.1  37 IQVRQgETLGIVGESGCGKSTLAKLLMGMLSPTTGQLDLATAAG 80 
                  5555559999******************9999999877666555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.3e-06    0.0042      32     188 ..      41     206 ..      24     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.3e-06
      AAA_25  32 agelallaGapgtGKttlaldlalava..tGkpwlg...pvapeqgkVlyvsaEdsedelrrRlravgeal..........rddarllvldlagv.esl 114
                  ge+  ++G +g+GK+tla  l+  ++  tG+   +        q + +  ++ d+ + l +Rl  ++             +  +r l+ +la++ + +
  EHT99056.1  41 QGETLGIVGESGCGKSTLAKLLMGMLSptTGQL--DlatAAGGGQERRMQMVFQDPLSSLDPRLPVWRIMTepvwiqsrasEKTRRALAESLARQvG-I 136
                 67788899***********98887777767773..44443344889999999****************88888999999875555556666777644.5 PP

      AAA_25 115 pLfakdrggtlltadvdaleaaieeveg.vrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 +  ++dr  ++  +  ++ +a +++    ++ +v+D  ++al+ + +     +++++ l +++++++ + +l+ H
  EHT99056.1 137 RPEYLDRPPHAFSGGQRQRIAIARALSSqPDIIVLDEPTSALDISVQ-----AQILNLLVELQQQYNLTYILISH 206
                 55566777777555555666666665445***************999.....89*******************99 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.5e-05    0.0088       7      57 ..      27      77 ..      23      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealev 57
                   + +a + l+i +  g  l +vG +G+GK+ lak l+++l+p + +  l +
    EHT99056.1 27 ERVHALNGLDIQVRQGETLGIVGESGCGKSTLAKLLMGMLSPTTGQLDLAT 77
                  56677778888888899999**********************998766555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3     2e-05     0.011      13      54 ..      33      75 ..      29      82 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpak.kvrf 54
                +g +i++++ ++  ++G+sG GKSTl   ++ +L p++ +++ 
  EHT99056.1 33 NGLDIQVRQGETLGIVGESGCGKSTLAKLLMGMLSPTTgQLDL 75
                56677777555777************88788888877755555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     0.001      0.58      31      65 ..      25      60 ..       6      69 .. 0.81
   2 ?    3.6   0.1     0.086        49     105     153 ..     162     212 ..     150     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
   IstB_IS21 31 dkrkvkeLatlsf.iekkenivllGpsGvGKshlai 65
                  ++v++L +l+  +++ e + ++G sG GKs la 
  EHT99056.1 25 VTERVHALNGLDIqVRQGETLGIVGESGCGKSTLAK 60
                456778888888548999****************96 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.086
   IstB_IS21 105 rllkvdllilDd.lgllpldqaea.ellfeviekryerrsiiitsnlpfae 153
                    ++d+++lD+  + l+++ +++  +l+  ++++y+ + i+i+ n+++ +
  EHT99056.1 162 LSSQPDIIVLDEpTSALDISVQAQiLNLLVELQQQYNLTYILISHNVSVVR 212
                 345789*****94345666654441556666899************99865 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     6e-05     0.035      21      57 ..      43      79 ..      26     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6e-05
                EEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnksdevegrFdsvawv 57
                  +++vG  G+GK+tlak  +  ++ ++g+ d     
  EHT99056.1 43 ETLGIVGESGCGKSTLAKLLMGMLSPTTGQLDLATAA 79
                5799**************9988888888888876666 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.7e-05     0.044      11      37 ..      39      65 ..      29     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.7e-05
                 EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 11 ivqGqrtlipgafgvGktvisqslskq 37
                 + qG++++i+g++g+Gk+++++ l+  
   EHT99056.1 39 VRQGETLGIVGESGCGKSTLAKLLMGM 65
                 679****************99665543 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1    0.0001      0.06       3      23 ..      47      67 ..      45      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.0001
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  ++G+sg+GKStlak L+  l+
    EHT99056.1 47 IVGESGCGKSTLAKLLMGMLS 67
                  78*************998876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0019       1.1      23      43 ..      43      63 ..      23      79 .. 0.79
   2 ?    2.8   0.0      0.15        84      77     119 ..     147     192 ..     144     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0019
                     S-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat 23 lsvlitGesGtGKellaraih 43
                      ++ i+GesG+GK++la+++ 
       EHT99056.1 43 ETLGIVGESGCGKSTLAKLLM 63
                     56669************9986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
                      SSTTTSS-BE..HHHHHTTTSEEEEET.GGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  77 aFtGAekekk..GlfekadgGtlfLDe.igelplelQekLlrvlqe 119
                      aF+G ++++    +  +++  ++ LDe  + l++++Q+++l++l e
       EHT99056.1 147 AFSGGQRQRIaiARALSSQPDIIVLDEpTSALDISVQAQILNLLVE 192
                      8899998888334445677889*****55689*********99855 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00056      0.32       4      23 ..      47      66 ..      45      79 .. 0.86
   2 ?    1.1   0.0      0.63   3.6e+02      61      91 ..     160     192 ..     122     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00056
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                +vG++G+gKs+la+ l  +l
  EHT99056.1 47 IVGESGCGKSTLAKLLMGML 66
                69*************99887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.63
                 ----.G-SEEEEESGGG--.HHHHHHHHHHHHS CS
       AAA_5  61 raar.egeilvlDEverae.sevlnsLlsllee 91 
                 ra   +++i+vlDE + a   +v++  l+ll e
  EHT99056.1 160 RALSsQPDIIVLDEPTSALdISVQAQILNLLVE 192
                 344468899999999988877888888888755 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00025      0.14       2      22 ..      44      64 ..      43      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                ++ + Ge+G+GK+tL++ l+ 
  EHT99056.1 44 TLGIVGESGCGKSTLAKLLMG 64
                56699***********98875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.032        18      36      53 ..      43      60 ..      18      77 .. 0.77
   2 ?    5.8   0.2     0.014       8.1     116     160 ..     162     204 ..     109     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.032
        TniB 36 pnlllvGdsnnGKtmive 53
                + l +vG+s +GK+++++
  EHT99056.1 43 ETLGIVGESGCGKSTLAK 60
                5788***********987 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.014
        TniB 116 relkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                  + ++ ++++DE  ++l    + q ++ln+l  L+++++++ +l+
  EHT99056.1 162 LSSQPDIIVLDEPTSAL--DISVQAQILNLLVELQQQYNLTYILI 204
                 346889***********..6667888***********99998876 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00039      0.22      26      45 ..      45      64 ..      33      72 .. 0.86
   2 ?   -2.2   0.0       6.1   3.5e+03     154     220 ..     120     187 ..      78     193 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00039
       DUF87 26 lAilgsTGsGKSntvavLle 45
                l+i+g++G GKS+++++L+ 
  EHT99056.1 45 LGIVGESGCGKSTLAKLLMG 64
                79***************985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.1
       DUF87 154 keelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkitii..dlsgvdelaqqlvv 220
                 ++++r l++++++++  + e+l+r +  fs  + + ia   + l+++  i ++  + s +d ++q ++ 
  EHT99056.1 120 EKTRRALAESLARQVGIRPEYLDRPPHAFSGGQRQRIAIA-RALSSQPDIIVLdePTSALDISVQAQIL 187
                 3355555556666666666666666666644444444433.5556666665553334455555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00032      0.19       4      27 ..      47      70 ..      45     185 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00032
      AAA_33  4 lvGlpGsGKstlaerllkklgavl 27
                +vG +G+GKstla+ l+  l  ++
  EHT99056.1 47 IVGESGCGKSTLAKLLMGMLSPTT 70
                59**************98877444 PP

>> Propep_M14  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00037      0.22      15      67 ..     160     209 ..     152     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00037
  Propep_M14  15 rdLeesseldfWkppsklgepvdilVppekledfeelLeslgisyevlieDvq 67 
                 r L++++++ ++++p+   +  di V+++ l+ + el ++++++y ++ ++v 
  EHT99056.1 160 RALSSQPDIIVLDEPT---SALDISVQAQILNLLVELQQQYNLTYILISHNVS 209
                 6799999999999666...99******************************95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00043      0.25       2      24 ..      45      67 ..      44      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00043
                EEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgeka 24
                 +ivG +  GKStL + l+g  +
  EHT99056.1 45 LGIVGESGCGKSTLAKLLMGMLS 67
                68**************9998644 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0011      0.61      51      89 ..     159     191 ..     120     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
     SbcCD_C  51 aalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 a ++ss      ++++++LDE  s lD   +a++l+ll 
  EHT99056.1 159 ARALSS------QPDIIVLDEPTSALDISVQAQILNLLV 191
                 333333......5899*******************9986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00041      0.24      38      70 ..      35      67 ..      20      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00041
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLskelg 70
                  ++ r+ + L i G sGCgkst  k L   l+
  EHT99056.1 35 LDIQVRQGETLGIVGESGCGKSTLAKLLMGMLS 67
                444455556899*************99977665 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00064      0.37       2      24 ..      45      67 ..      44      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00064
         PRK  2 IgvagsSGaGkttvarklekifg 24
                +g+ g+SG+Gk+t+a+ l  ++ 
  EHT99056.1 45 LGIVGESGCGKSTLAKLLMGMLS 67
                59*************99887765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00094      0.54       3      22 ..      47      66 ..      45     107 .. 0.84
   2 ?   -1.8   0.0       7.4   4.3e+03      49      84 ..     175     208 ..     146     234 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00094
      AAA_18  3 ltGtpGvGKttlakeLskrl 22
                + G +G+GK+tlak L  +l
  EHT99056.1 47 IVGESGCGKSTLAKLLMGML 66
                8899************6654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 7.4
      AAA_18  49 skrldedkldklldaleenssaleegknlvidghla 84 
                 +  ld+ +++++l++l e  +  + + ++++ +h +
  EHT99056.1 175 TSALDISVQAQILNLLVELQQ--QYNLTYILISHNV 208
                 455666677777777777644..3333334444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00062      0.36      23      43 ..      46      66 ..      27      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00062
      AAA_23 23 lItGpNGaGKTTildAiklaL 43
                 I+G+ G+GK+T+   +  +L
  EHT99056.1 46 GIVGESGCGKSTLAKLLMGML 66
                5************98777666 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.15        87     235     262 ..      30      60 ..       7      65 .. 0.66
   2 ?    6.8   0.1    0.0044       2.6     324     369 ..     149     194 ..     146     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.15
                 EEEEEEEE..-SS.EEEEEE-TTSSHHHHHH CS
  ABC_ATPase 235 kkvsGmgi..pkG.vtlIvGggfhGKsTLLe 262
                 ++++G+ i  ++G    IvG    GKsTL +
  EHT99056.1  30 HALNGLDIqvRQGeTLGIVGESGCGKSTLAK 60 
                 56667654227894555************87 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0044
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GG CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvske 369
                 SG   q  +i++al  + +++++DE tsA  + ++ + ++ lv+ +
  EHT99056.1 149 SGGQRQRIAIARALSSQPDIIVLDEPTSALDISVQAQILNLLVELQ 194
                 89999999*********************99999888888777544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.003       1.7      27      49 ..      46      68 ..      34      93 .. 0.86
   2 ?    0.2   0.2      0.84   4.9e+02     321     361 ..     163     203 ..     152     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.003
      AAA_15 27 vliGkNnsGKSsilealdlFlnn 49
                 ++G+ ++GKS+++++l  +l+ 
  EHT99056.1 46 GIVGESGCGKSTLAKLLMGMLSP 68
                59***************888875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.84
      AAA_15 321 eeknvilliEEPEahLHpqaqkvlikllkelandnktQvii 361
                 +++++i++++EP   L ++ q ++ +ll el ++ +   i+
  EHT99056.1 163 SSQPDIIVLDEPTSALDISVQAQILNLLVELQQQYNLTYIL 203
                 56789*********999999999999999998876655555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.49   2.8e+02      23      39 ..      49      65 ..      47      94 .. 0.79
   2 ?   -2.4   0.1       2.3   1.3e+03     531     540 ..      90      99 ..      83     101 .. 0.88
   3 ?    7.7   0.3    0.0021       1.2     526     580 ..     165     217 ..     156     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.49
      AAA_13 23 GwNGaGKTtLSrllrsl 39
                G  G GK+tL++ll  +
  EHT99056.1 49 GESGCGKSTLAKLLMGM 65
                888**********9876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
      AAA_13 531 viDDPvSSLD 540
                 v+ DP SSLD
  EHT99056.1  90 VFQDPLSSLD 99 
                 889******9 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0021
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 +  i+v+D P S LD  ++  + +l+ +   ++ +   ++i+ Hn++  + ++++
  EHT99056.1 165 QPDIIVLDEPTSALDISVQAQILNLLVELQ-QQYNLTYILIS-HNVSVVRHMSDR 217
                 678***********************9997.67777777775.****99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2207.76
//
Query:       EHT99057.1  [L=416]
Description: D-amino acid dehydrogenase small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-72  244.2   1.5    3.3e-72  244.0   1.5    1.0  1  DAO             FAD dependent oxidoreductase
      2e-09   37.0   2.7    3.2e-05   23.2   0.0    2.3  2  FAD_binding_2   FAD binding domain
      1e-07   32.4   0.0    0.00011   22.7   0.2    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.5e-07   31.0   0.1    0.00062   19.1   0.5    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.4e-07   30.9   0.2      5e-06   26.6   0.2    2.4  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.8e-05   23.8   0.4     0.0002   21.0   0.3    2.1  2  ApbA            Ketopantoate reductase PanE/ApbA
    0.00012   21.6   0.0       0.17   11.2   0.0    2.3  2  Amino_oxidase   Flavin containing amine oxidoreductase
    0.00013   20.8   0.7       0.16   10.6   0.5    2.4  3  HI0933_like     HI0933-like protein
    0.00046   19.6   1.0      0.021   14.1   0.5    2.3  2  FAD_binding_3   FAD binding domain
     0.0017   18.0   0.2     0.0037   16.9   0.2    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0044   16.4   1.3          2    7.6   1.8    2.2  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0053   15.7   3.2       0.06   12.2   1.4    2.2  2  Trp_halogenase  Tryptophan halogenase
     0.0089   15.3   0.4      0.051   12.8   0.5    2.0  2  Thi4            Thi4 family
  ------ inclusion threshold ------
      0.027   13.8   0.5      0.045   13.0   0.5    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.031   14.5   0.1      0.072   13.4   0.1    1.6  1  TrkA_N          TrkA-N domain
      0.053   13.4   0.9       0.12   12.2   0.5    1.7  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.062   12.4   0.6       0.31   10.1   0.7    1.8  2  GIDA            Glucose inhibited division protein A
      0.072   13.1   0.3       0.28   11.2   0.0    2.1  2  Glyco_transf_4  Glycosyltransferase Family 4
       0.12   12.9   0.0       0.22   12.0   0.0    1.5  1  Transglut_core  Transglutaminase-like superfamily
       0.12   11.6   0.0       0.67    9.2   0.2    1.9  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
       0.19   11.7   0.3       0.35   10.9   0.3    1.4  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.0   1.5   3.8e-75   3.3e-72       1     351 [.       2     396 ..       2     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 244.0 bits;  conditional E-value: 3.8e-75
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.......................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.......................................... 55 
                 ++++ G+G++G++tA++L+++g  Vt++e++  ++ g+S +n+g++++g++ +p+a                                           
  EHT99057.1   2 KIIVLGSGVVGVTTAWYLQQAGhqVTVIEREAGPALGTSAANAGQISPGYA-APWAApgvplkavkwmvqrhaplsvrpdgsrfqlawmmqmlkncnsh 99 
                 59****************99999***************************8.9998899**************************************** PP

                 .......HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT.ST...TTSEEEEETTEEEE CS
         DAO  56 .......elarlslealeelreleeelgididyrrtGllslaadeeelealdkllallleagldaelldaeevrelepa.lp...gllgalfypdtgqv 143
                        +++rl++++++++ +l +++gi+ + r+ G+l+l+++e+++e+ ++ +a l+eag++++ll+a++++ +epa  +   +l+g+l  p++ + 
  EHT99057.1 100 syavnkaRMVRLAEYSRDCISALRASTGIEYEGRQGGTLQLFRTEQQFENAARDIAVLQEAGVPYQLLEADQLATVEPAlADvkhKLTGGLRLPNDETG 198
                 *******************************************999********************************96337789************* PP

                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEE.EEEEEEEE--GGGHH.HHHTTCTT.TSEEEEEEEEEEEEEECCTHSTGSG CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgen.daadavVnaaGawsd.llgllkel.dlpispvrgqvlvlkplseklvspa 238
                 d++ +t+ la+ a+++Gv+++++t+v +l  e++++ g+        +  +ad  V+a Ga+s+ ll   ++l  +p++p++g++l++ pl +     +
  EHT99057.1 199 DCQLFTQRLAALARDAGVTFRFNTQVDALLSEGDRIRGIVcG----DQtLTADGYVMAFGAYSTqLL---RPLmYIPVYPLKGYSLTI-PLAD-----E 284
                 ****************************86667888999442....33224699********99777...666457************.8766.....5 PP

                 CSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEE..EEEEEEE.ETTSSEEEEEEETEEEEEEEEEC CS
         DAO 239 ailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvlr..kwaGlrp.lpdglpligetpgvkglylatGh 334
                 a++pv  t+ d+++ +++ r d+r++vGg a e  g+   +  +++++ l   +++l+P+ g+v++   w+Glrp +pdg p++g+t+ + +l+l+tGh
  EHT99057.1 285 AGAPVS-TVLDETYKIAITRFDNRIRVGGMA-EIVGYSK-TLLPARRQTLEMVVNDLYPRGGRVEQatFWTGLRPmTPDGTPIVGHTH-FTNLWLNTGH 379
                 899999.99**********************.9999999.********************99999666*******55*********98.99******** PP

                 TTTHHHHHHHHHHHHHH CS
         DAO 335 sghGltlapatGkllae 351
                 +  G+t+a+++G+ll++
  EHT99057.1 380 GTLGWTMACGSGQLLSD 396
                 **************987 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.7   6.3e-05     0.054       2      41 ..       3      42 ..       2      52 .. 0.82
   2 !   23.2   0.0   3.8e-08   3.2e-05      87     211 ..     148     265 ..     130     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.3e-05
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41
                   +iV GsG+ G + A  +++aG++v+v+e e    + t ++
     EHT99057.1  3 IIVLGSGVVGVTTAWYLQQAGHQVTVIEREAGPALGTSAA 42
                   79**************************998665544444 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3.8e-08
                    HTHHHHHHHHHHTT----B.CCTS.SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEE CS
  FAD_binding_2  87 eaapeavdeLeelgvpfsr.tedg.pvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavve 180
                    e+a++ ++ L+e gvp++  ++d+ +     l +++++ +t+   ++ ++++ ++ +    rl++ ar+agv+f+++t++d+L+ e++r++G+v+ 
     EHT99057.1 148 ENAARDIAVLQEAGVPYQLlEADQlATVEPALADVKHK-LTGG--LRLPNDETGDCQLFTQRLAALARDAGVTFRFNTQVDALLSEGDRIRGIVCG 240
                    67888888888889999884333355555556777777.4444..4444478889999999**********************************9 PP

                    ETTTTCEEEEEESEEEE-----GG....... CS
  FAD_binding_2 181 npesgrevrirakavvlatgGfgrallkell 211
                          +++++a++ v+a g+++ +ll++l+
     EHT99057.1 241 ------DQTLTADGYVMAFGAYSTQLLRPLM 265
                    ......7778899999999999987776665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2   1.3e-07   0.00011       1      34 [.       2      35 ..       2      46 .. 0.89
   2 !    7.1   0.0    0.0094         8      44      77 ..     205     238 ..     200     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34
                k++v+G+G++g+  A +l++ g++Vtv+er+  +
  EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIEREAGP 35
                799***************************8765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0094
                 HHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  44 kilqeklekngievllntkveeiegsedgvesvk 77 
                 ++l+   ++ g+++++nt+v ++  ++d +++++
  EHT99057.1 205 QRLAALARDAGVTFRFNTQVDALLSEGDRIRGIV 238
                 5677778999*************99998777765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   7.3e-07   0.00062     144     175 ..       2      33 ..       1      47 [. 0.79
   2 !    9.4   0.0   0.00066      0.56     185     240 ..     203     258 ..     199     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.3e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveard 175
                  +i+v G+G++Gv +A +l ++g++vt++e+  
   EHT99057.1   2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIEREA 33 
                  67888999999999999999999999988864 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00066
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrps 240
                  ++++l++  ++ Gv+++++t+v ++ ++g++++  v +d +++ ad  v+a G    
   EHT99057.1 203 FTQRLAALARDAGVTFRFNTQVDALLSEGDRIRgIVCGD-QTLTADGYVMAFGAYST 258
                  567788888999******************999555555.559********997655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.2   5.9e-09     5e-06       1      32 [.       5      36 ..       5      65 .. 0.79
   2 ?    1.5   0.0      0.42   3.6e+02      18      36 ..     297     315 ..     285     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.9e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   ++G+G+ G ++A++L++ag++v+++e+  ++ 
     EHT99057.1  5 VLGSGVVGVTTAWYLQQAGHQVTVIEREAGPA 36
                   89************************987764 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.42
                    CTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  18 agfdvlllekrdrlGGraa 36 
                    +++ ++ +++r r+GG a 
     EHT99057.1 297 YKIAITRFDNRIRVGGMAE 315
                    4788999*********885 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3   2.3e-07    0.0002       1      31 [.       3      33 ..       3      40 .. 0.94
   2 ?    0.0   0.0      0.69   5.9e+02      14      55 ..     204     247 ..     201     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr 31
                i +lG+G +G + a++L++ag++vt+i r++
  EHT99057.1  3 IIVLGSGVVGVTTAWYLQQAGHQVTVIEREA 33
                78*************************9986 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.69
                 HHHHHHHTHC..EEEE-SCHHHHHHHHHCEEEEETT.CEEEEEEC CS
        ApbA  14 aakLakagad..vtlilrsrrlealkknGlrltseg.geeilrpp 55 
                   +La+ ++d  vt+ ++++ ++al ++G r+++   g+++l  +
  EHT99057.1 204 TQRLAALARDagVTFRFNTQ-VDALLSEGDRIRGIVcGDQTLTAD 247
                 56777756663477777766.********9999999888877665 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0002      0.17       3      23 ..      12      32 ..      11      35 .. 0.92
   2 !    8.2   0.0    0.0016       1.4     212     272 ..     203     263 ..     139     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                   HHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEar 23
                   G ++A++L++aG++Vtv+E +
     EHT99057.1 12 GVTTAWYLQQAGHQVTVIERE 32
                   889****************86 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
                    HHHHHHH..TTTTEEEETSEEEEEEEEETTC.EEEEETTSTEEEESEEEE-S-HHHHHSSEEES CS
  Amino_oxidase 212 lpealae..elrgldirlntrVkeikregdg.vtvtledgevveaDaVvvTvplgvlkailfsP 272
                      ++la+  +  g+++r+nt V  +  egd   ++ +   ++++aD +v++   +  +  l++P
     EHT99057.1 203 FTQRLAAlaRDAGVTFRFNTQVDALLSEGDRiRGIVC-GDQTLTADGYVMAFGAYSTQ--LLRP 263
                    5567777777*****************9999445555.55556********9998888..6666 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.5   0.00019      0.16       2      33 ..       2      33 ..       1      45 [. 0.91
   2 ?   -3.3   0.0       3.2   2.8e+03      73     102 ..     110     141 ..      95     150 .. 0.75
   3 !    7.8   0.0    0.0014       1.2     115     167 ..     207     258 ..     194     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 ++iv+G G  G+ +A  ++++g++V+++e++ 
   EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIEREA 33
                 79**************************9875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.2
                  HHHHS-HHHHHHHHHHTT--EEE-STT..EEE CS
  HI0933_like  73 alsrftnedlialveelgvelkeedsg..rlF 102
                   l++++ + + al ++ g+e++ ++ g  +lF
   EHT99057.1 110 RLAEYSRDCISALRASTGIEYEGRQGGtlQLF 141
                  48999999999999999999999888744455 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0014
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  l + +++agv++r +t+v ++ +e d++  + + ++++l+ad  v+A G  S 
   EHT99057.1 207 LAALARDAGVTFRFNTQVDALLSEGDRIRGIVC-GDQTLTADGYVMAFGAYST 258
                  6777899********************999999.***************9885 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.5   2.4e-05     0.021       3      36 ..       2      35 ..       1      45 [. 0.90
   2 ?    3.6   0.0     0.038        32     108     145 ..     204     241 ..     149     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36
                   ++++ G+G +G+++a  L++aG +v+++e+ +  
     EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIEREAGP 35
                   67899*************************9865 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.038
                    HHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEEC CS
  FAD_binding_3 108 eriLvehaeerglqvrfktevesleqdeegvtaevrdk 145
                    ++ L++ a+ +g+++rf+t+v +l+ +++ ++  v + 
     EHT99057.1 204 TQRLAALARDAGVTFRFNTQVDALLSEGDRIRGIVCGD 241
                    56688889999******************999888754 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   4.3e-06    0.0037       1      30 [.       1      30 [.       1      35 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-06
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE- CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvD 30
                    mki v+G+G vG++ta  l ++gh+v+++ 
      EHT99057.1  1 MKIIVLGSGVVGVTTAWYLQQAGHQVTVIE 30
                    89*************************997 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   1.8    0.0024         2       2      41 ..       3      44 ..       2     185 .. 0.60
   2 !    6.1   0.0    0.0068       5.8      85     136 ..     199     246 ..     180     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveer..gvlGGlltsg 41
                  ++V G+g+ Gv+ A    +aG +v ++e++  + lG  ++++
    EHT99057.1  3 IIVLGSGVVGVTTAWYLQQAGHQVTVIEREagPALGTSAANA 44
                  89*************************965215666444444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0068
  FAD_oxidored  85 epevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirA 136
                   + + +++ l ++ ++agvt  +nt++++   eg+ri+++++     ++t++A
    EHT99057.1 199 DCQLFTQRLAALARDAGVTFRFNTQVDALLSEGDRIRGIVCG----DQTLTA 246
                   6667777788888***************************94....566665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   1.4     7e-05      0.06       1      41 [.       2      39 ..       2      50 .. 0.89
   2 ?    2.9   0.0     0.046        39     152     207 ..     199     253 ..     197     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7e-05
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgv 41
                    ki+++G G  G ++A +l++a+   ++vt++e e+ + +g 
      EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAG---HQVTVIEREAGPALGT 39
                    79********************...99******99888775 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.046
                     -HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-S CS
  Trp_halogenase 152 daalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcs 207
                     d +l+ + L + a ++Gvt +  + v++ l e +r+ ++    ++++ ad ++ + 
      EHT99057.1 199 DCQLFTQRLAALARDAGVTFRFNTQVDALLSEGDRIRGIVC-GDQTLTADGYVMAF 253
                     678999********************************999.55668888776555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.5     6e-05     0.051      19      56 ..       2      38 ..       1      48 [. 0.84
   2 ?   -0.7   0.0      0.82     7e+02      96     138 ..     200     240 ..     196     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                 +++ G+G  G+t+a yl ++ + +v+++er+  p  G
  EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQA-GHQVTVIEREAGPALG 38
                69******************9.*********9866544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEE CS
        Thi4  96 aalftstllskvlqlanvkllnavaveDlivregegvaGvvin 138
                   lft +l++ + + a+v     + v+ l+  eg++++G+v  
  EHT99057.1 200 CQLFTQRLAALARD-AGVTFRFNTQVDALL-SEGDRIRGIVCG 240
                 56788888888888.999887777776655.566*****9975 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   5.3e-05     0.045      30      60 ..       2      32 ..       1      41 [. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.3e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvr 60
                 k++v+G Gv+G+  ++  ++ g +Vtv++ +
   EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIERE 32
                 899************************9976 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.5e-05     0.072       1      30 [.       3      32 ..       3      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.5e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESS CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkd 30
                ii++G G vG + a +L++ g+ +v+vi+++
  EHT99057.1  3 IIVLGSGVVGVTTAWYLQQaGH-QVTVIERE 32
                89*****************555.8*****86 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00014      0.12       1      32 [.       2      33 ..       2      48 .. 0.88
   2 ?   -2.5   0.0       4.6   3.9e+03      57      85 ..     131     160 ..      93     164 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdise 32
                k+ v+G+G++G   a  + +ag++V+++++++
  EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIEREA 33
                578*************************9865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.6
                 HHHHCCCHHCEEEES-HHHHH.C-SEEEE- CS
     3HCDH_N  57 eeeveaalarisfttdleeav.dadlviEa 85 
                 e     +l+  ++++++e+a+ d  + +Ea
  EHT99057.1 131 EGRQGGTLQLFRTEQQFENAArDIAVLQEA 160
                 445556778888888888888888888887 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00036      0.31       1      31 [.       2      32 ..       2      49 .. 0.82
   2 ?   -0.6   0.0      0.64   5.5e+02     115     154 ..     221     259 ..     209     263 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                ++iV+G G  G+  A+ + ++G++v+ i  +
  EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIERE 32
                69************************99433 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
                 ES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT- CS
        GIDA 115 eeeveeliveekkvkgvvtedgetikakavviatGtflkg 154
                 + +v+ l+ e ++++g+v  d +t++a+  v+a G+++++
  EHT99057.1 221 NTQVDALLSEGDRIRGIVCGD-QTLTADGYVMAFGAYSTQ 259
                 56899999999*****99876.567889999****99876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00033      0.28       3      43 ..       7      54 ..       6      97 .. 0.70
   2 ?   -1.3   0.2       2.3   1.9e+03      86     108 ..     351     373 ..     346     387 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
  Glyco_transf_4  3 GverhvleLaraLarrGheVtvvtpgddgpleeev.......elvvrv 43
                    G +++ ++ a +L+++Gh+Vtv+ ++ +++l+          + + ++
      EHT99057.1  7 GSGVVGVTTAWYLQQAGHQVTVIEREAGPALGTSAanagqisPGYAAP 54
                    55667778899************9999999998855543333222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
  Glyco_transf_4  86 aallalrrrlgiplVltvHglye 108
                     + +l+ +   g p+V + H++  
      EHT99057.1 351 WTGLRPMTPDGTPIVGHTHFTNL 373
                     44555555689999999999983 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00026      0.22      37      82 ..     176     228 ..     137     258 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00026
  Transglut_core  37 tpgsrdaeavletgk.......GncedfaslfvallRalGipaRvvtgylsge 82 
                     +p+ +d+ + l+ g        G+c+ f++ ++al+R +G+  R+ t++    
      EHT99057.1 176 EPALADVKHKLTGGLrlpndetGDCQLFTQRLAALARDAGVTFRFNTQVDALL 228
                     4444455555553333344445***********************99987754 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00078      0.67       1      30 [.       4      32 ..       3      43 .. 0.90
   2 ?   -0.6   0.0      0.71   6.1e+02      87     136 ..     207     257 ..     197     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00078
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i+ G G  G+++a  l++ag  +++++E++
   EHT99057.1  4 IVLGSGVVGVTTAWYLQQAGH-QVTVIERE 32
                 788*****************9.79****97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.71
  Pyr_redox_3  87 lrevaksfelpiklfeeVesvkke.degfevetsketyeAkkviiAtGefd 136
                  l+++a+   +  + +++V ++ +e d+   + +  +t++A+  ++A G ++
   EHT99057.1 207 LAALARDAGVTFRFNTQVDALLSEgDRIRGIVCGDQTLTADGYVMAFGAYS 257
                  556677777788888888888776145567888888999999999999887 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3    0.0004      0.35       1      32 [.       2      33 ..       2      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-H CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvree 32
                    ki vlG+G  G + A  l+++gh+v+++ re+
      EHT99057.1  2 KIIVLGSGVVGVTTAWYLQQAGHQVTVIEREA 33
                    799************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2923.67
//
Query:       EHT99058.1  [L=394]
Description: FAD/NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.1e-155  515.9   0.0   6.8e-155  515.8   0.0    1.0  1  HI0933_like    HI0933-like protein
    3.1e-12   46.3   0.8    4.9e-09   35.8   0.1    3.0  3  FAD_binding_2  FAD binding domain
      1e-10   41.8   0.8    8.6e-07   28.9   0.1    2.8  3  DAO            FAD dependent oxidoreductase
    1.7e-09   37.3   0.0    7.1e-09   35.3   0.0    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    6.9e-09   35.4   0.5     0.0077   15.5   0.4    3.2  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.1e-08   33.4   0.0    4.9e-08   32.8   0.0    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    6.3e-08   32.1   3.2    0.00021   20.5   1.1    2.9  2  GIDA           Glucose inhibited division protein A
      1e-06   28.9   1.0    2.5e-06   27.6   1.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.9e-05   23.9   0.1     0.0013   17.8   0.2    2.1  2  Lycopene_cycl  Lycopene cyclase protein
    0.00093   18.6   0.1       0.32   10.2   0.0    2.7  3  Amino_oxidase  Flavin containing amine oxidoreductase
     0.0011   18.9   0.0     0.0043   17.0   0.0    2.0  1  NAD_binding_9  FAD-NAD(P)-binding
     0.0079   15.5   0.0      0.016   14.5   0.0    1.5  1  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.017   15.7   0.1       0.88   10.2   0.1    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.027   13.7   0.1       0.13   11.4   0.1    2.0  2  FAD_binding_3  FAD binding domain
      0.045   13.0   0.0      0.075   12.3   0.0    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.8   0.0  5.7e-158  6.8e-155       1     408 [.       4     392 ..       4     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 515.8 bits;  conditional E-value: 5.7e-158
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE-ST CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelkeeds 98 
                  +dviviG+GaAGl++A++a++rg+rVlll+++kk+grKil+sGgGrcN+Tnl++ep+++ls+   np+f+ksal+r+t++d+i+lv+++g++++e++ 
   EHT99058.1   4 FDVIVIGAGAAGLFCAAQAGQRGRRVLLLDNGKKPGRKILMSGGGRCNFTNLYTEPAAYLSN---NPHFCKSALARYTQWDFIDLVNRHGIAWHEKTL 98 
                  59************************************************************...********************************* PP

                  TEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEEES-- CS
  HI0933_like  99 grlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfghtivplrpalvp 196
                  g+lF+++ +a+++vd+ll+e+++ +v+lrl++e+ sv+++e g + +++ ++++++a+klv+A+GGlS+P lG++++gyk+aeqfg+t++p+r+alvp
   EHT99058.1  99 GQLFCDE-SAQQMVDLLLAECEKGRVTLRLRSEILSVTRDEAG-YVLQL-NGSSVQAEKLVIASGGLSMPGLGASPFGYKVAEQFGLTVLPTRAALVP 193
                  *******.*****************************999888.*****.************************************************ PP

                  EE--HHHH.HCGGGTT-EEEEEEE...ECTTEEEEEEEEE-SSEEESHHHHHHTTT-......-TT--EEEECSTTS-...HHHHHHHHHHHTTTSBH CS
  HI0933_like 197 ltlkeskl.klkelsGvslkavvlslkkkkkatekgellfThrGlsGpailqlSsyvakalekkeeetleidllPdldaeelkaalekekekeskksl 293
                  +tl++++l +l++lsGv+l++ +   ++k+++++k+++lfThrGlsGpa+lq+Ssy+      +++e ++++l P++    l+a+l+ ++ ++++ sl
   EHT99058.1 194 FTLHKPLLeQLQTLSGVALDTSI---EAKDGTVFKEAMLFTHRGLSGPAVLQISSYW------QPSEFISVNLSPATP---LDAFLTIQRDAHPNLSL 279
                  ****66553889********999...599****************************......***************...***************** PP

                  HHHHTTTS-HHHHHHHHHC..TTT-TTBGGG--HHHHHHHHHHHHSEEE--SEE--TTT-SEEEEEE-GGGB-TTT-BBTTSTTEEE-GGGBSEEE-T CS
  HI0933_like 294 knalaellpkrlvevlleealieeedkklaqlskkelkklaealkaltvkvngteglrkaevTaGGVdlkevssktmeskkvpgLffaGEvlDvegvt 391
                  kn+la++lpkrlve+l+e +    +d +l+ql++k++++l+++l++++v++ngteg+r+aevT+GGVd++++ssktme++ vpgL+f+GEv+Dv+g++
   EHT99058.1 280 KNSLAKILPKRLVEILQEMQV--VPDVTLKQLNSKQQSALVQTLHNWQVQPNGTEGYRTAEVTLGGVDTTQLSSKTMEARDVPGLYFIGEVVDVTGWL 375
                  ***************999855..5999*********************************************************************** PP

                  TTHHHHHHHHHHHHHHH CS
  HI0933_like 392 GGynlqaAwasgyaAGk 408
                  GGyn+q+Aw+s++a+++
   EHT99058.1 376 GGYNFQWAWSSAWACAQ 392
                  ***************98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   4.1e-12   4.9e-09       1      45 [.       5      49 ..       5      58 .. 0.94
   2 ?   -1.0   0.0      0.59   7.1e+02     142     204 ..     109     164 ..      93     190 .. 0.66
   3 !    6.8   0.0    0.0026       3.1     370     404 ..     338     373 ..     334     380 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.1e-12
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-E CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgi 45
                   DviViG+G+AGL +A++a ++G++v++++++++ g  + +s+Gg 
     EHT99058.1  5 DVIVIGAGAAGLFCAAQAGQRGRRVLLLDNGKKPGRKILMSGGGR 49
                   9********************************999*****9995 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.59
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    +++  l+++++k  v+++ r e++++++   +  G v++   +g+ v  +a ++v+a+gG + 
     EHT99058.1 109 QMVDLLLAECEKGRVTLRLRSEILSVTR---DEAGYVLQ--LNGSSV--QAEKLVIASGGLSM 164
                    5666666666555566666666666644...33455565..444444..47777777777765 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0026
                    EEES-EEEBETTSBESTTEEESSBTEEE-STCE..ES CS
  FAD_binding_2 370 hytmgGvetdengrvldadgqpipGLYAaGeva..ag 404
                      t+gGv t++ +     + + +pGLY +Gev    g
     EHT99058.1 338 EVTLGGVDTTQLSSK-TMEARDVPGLYFIGEVVdvTG 373
                    5799***99876665.79999***********94433 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   7.2e-10   8.6e-07       1      92 [.       5     104 ..       5     112 .. 0.72
   2 !   12.7   0.0   5.9e-05      0.07     130     205 ..      96     164 ..      88     211 .. 0.69
   3 ?   -0.5   0.0       0.6   7.2e+02     311     348 ..     358     393 ..     313     394 .] 0.84

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.2e-10
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH........HHHHHHHHH.HHHHHHHHHHHSSTTSEEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas........elarlslea.leelreleeelgididyrrtGlls 88 
                 dv++iG+G +Gl++A ++ +rg  V+ll+ g+ +g+      +g +     y+++a         ++  l++++ +++++ ++++ gi +  +  G l+
  EHT99058.1   5 DVIVIGAGAAGLFCAAQAGQRGrrVLLLDNGKKPGRKILMSGGGRCNFTNLYTEPAAylsnnphfCKSALARYTqWDFIDLVNRH-GIAWHEKTLGQLF 102
                 9********************99************66666666666554433444334555556788899999966888888876.9765555555555 PP

                 EESS CS
         DAO  89 laad 92 
                 +  d
  EHT99058.1 103 C--D 104
                 4..3 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.9e-05
                 TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHH CS
         DAO 130 gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsd 205
                 ++lg lf+++++q    +++  l++++e++ v++++++e+ ++ +++  ++ ++ +   g+ ++a+++V+a G  s 
  EHT99058.1  96 KTLGQLFCDESAQ----QMVDLLLAECEKGRVTLRLRSEILSVTRDE-AGYVLQlN---GSSVQAEKLVIASGGLSM 164
                 5677888888666....9999**********************6643.33444233...665455888888875543 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.6
                 EETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHH CS
         DAO 311 plpdglpligetpgvkglylatGhsghGltlapatGkl 348
                 + ++gl +ige+  v g +  +++  +++++a+a++++
  EHT99058.1 358 D-VPGLYFIGEVVDVTGWLGGYNF-QWAWSSAWACAQA 393
                 4.6788899997667788888888.9999999999986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     6e-12   7.1e-09       1     110 [.       4     162 ..       4     192 .. 0.80
   2 ?   -1.5   0.0      0.95   1.1e+03     263     278 ..     353     369 ..     331     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 6e-12
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias......................................... 57 
                  +dv+viG+G+AGl +a +++q g +v+l+ ++g  +++++l+s   +    +  ++                                          
   EHT99058.1   4 FDVIVIGAGAAGLFCAAQAGQRGRRVLLL-DNGKKPGRKILMSGGGRCNFTNLYTEPaaylsnnphfcksalarytqwdfidlvnrhgiawhektlgq 100
                  69***************************.7777888888885533332222222223344577777779**************************** PP

                  ............HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EE CS
                  ............xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ............evvkklnqg.ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGss 110
                                + + ++g ++l+l++e++++ ++++ ++l +    ++ +++++klv+A+G+ 
   EHT99058.1 101 lfcdesaqqmvdLLLAECEKGrVTLRLRSEILSVTRDEAGYVL-Q---LNGSSVQAEKLVIASGGL 162
                  ***********9555567777799999999********88888.3...45779***********64 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.95
                  TSBES.STTEEE-GGGC CS
                  xxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 263 flrtn.vpgiyaiGDva 278
                  +++   vpg+y iG v+
   EHT99058.1 353 TMEARdVPGLYFIGEVV 369
                  4555559*******998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   6.5e-06    0.0077       1      31 [.       7      36 ..       7      43 .. 0.90
   2 !   15.0   0.0   9.5e-06     0.011      81     139 ..     108     166 ..      91     179 .. 0.86
   3 ?    0.8   0.0      0.19   2.3e+02     209     305 .]     282     366 ..     267     366 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.5e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 i+iGaG+aGl +a ++ + g  ++l l+ g+
   EHT99058.1  7 IVIGAGAAGLFCAAQAGQRGR-RVLLLDNGK 36
                 89******************9.89***9984 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 9.5e-06
  Pyr_redox_3  81 kealeYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPn 139
                  +++++ l + +++ ++  +l +e+ sv++++ g++++ + ++++A+k++iA G  + P 
   EHT99058.1 108 QQMVDLLLAECEKGRVTLRLRSEILSVTRDEAGYVLQLNGSSVQAEKLVIASGGLSMPG 166
                  56666666667788889999*********************************999886 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.19
  Pyr_redox_3 209 slkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteet.nvpglflaG 305
                  sl  +  +rl e++  ++++v+ + ++k+++ k+++  v+t ++++v+ +       Gy+     l   +++     + +l ++t+e   vpgl+++G
   EHT99058.1 282 SLAKILPKRLVEIL--QEMQVVPDVTLKQLNSKQQSALVQTLHNWQVQPNGT----EGYRTAEVTLG--GVD-----TTQLSSKTMEArDVPGLYFIG 366
                  33334444444444..457888888888888888888888777666655433....45554444443..222.....234445555542467777766 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   4.1e-11   4.9e-08       1     117 [.       5     138 ..       5     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.1e-11
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGG..lltsglvatdignkaee.............qvvtgiareflerlrqrggarlk.krskw 81 
                   Dv+V+G+g+aG+ +A +A ++G++vlL+++ +  G   l+++g+++++++ ++e              ++++ + ++f++ ++++g a  + k+ + 
    EHT99058.1   5 DVIVIGAGAAGLFCAAQAGQRGRRVLLLDNGKKPGRkiLMSGGGRCNFTNLYTEPaaylsnnphfcksALARYTQWDFIDLVNRHGIA-WHeKTLG- 99 
                   9**********************************8447999999*****88777888988999999888888999999999775555.3414444. PP

  FAD_oxidored  82 ntfepevakavleeml...aeagvtvllntrlvevekeg 117
                   + f  e a+++++ +l   ++ +vt+ l +++ +v++++
    EHT99058.1 100 QLFCDESAQQMVDLLLaecEKGRVTLRLRSEILSVTRDE 138
                   68999999999999999887789******9999999985 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.1   1.7e-07   0.00021       1      29 [.       5      39 ..       5     175 .. 0.79
   2 !   10.3   0.0   0.00022      0.26     341     370 ..     344     374 ..     304     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.7e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEE......E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi......t 29
                dviViG+G AG+ +A++a ++G +vlL+       
  EHT99058.1  5 DVIVIGAGAAGLFCAAQAGQRGRRVLLLdngkkpG 39
                8**************************96654441 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
                 E-GGGB-T.TSBBSSSBTEEE-CGGGTB-SH CS
        GIDA 341 vdprqlln.tLetkkvkgLflAGqinGteGY 370
                 vd++ql + t+e ++v+gL++ G++  ++G+
  EHT99058.1 344 VDTTQLSSkTMEARDVPGLYFIGEVVDVTGW 374
                 899****99***************9888886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   1.0   2.1e-09   2.5e-06       1      32 [.       8      39 ..       8      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.1e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   ++GaG++Gl +A+ + ++g++vlll+++ ++G
     EHT99058.1  8 VIGAGAAGLFCAAQAGQRGRRVLLLDNGKKPG 39
                   8****************************999 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.1e-06    0.0013       1      36 [.       5      38 ..       5      44 .. 0.94
   2 ?    3.9   0.0      0.02        23      85     146 ..     106     168 ..      89     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dv+viGaG+Agl  Aa+    + g +v+l++ ++++
     EHT99058.1  5 DVIVIGAGAAGLFCAAQA--GQRGRRVLLLDNGKKP 38
                   9*****************..9**********99886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.02
  Lycopene_cycl  85 sskrlkeellerlvengvk.lleakvesveeeeageslvvleggrkirarlvvdarglaslk..k 146
                    s +++   ll ++ +++v+ +l++ + sv+ +ea   +v   +g  ++a   v a+g  s +  +
     EHT99058.1 106 SAQQMVDLLLAECEKGRVTlRLRSEILSVTRDEA--GYVLQLNGSSVQAEKLVIASGGLSMPglG 168
                    56788889999999888863689***********..78888899999999888888844444443 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.65   7.7e+02       2      27 ..      14      39 ..      13      42 .. 0.87
   2 !   10.2   0.0   0.00026      0.32     203     260 ..     101     159 ..      58     180 .. 0.84
   3 !    5.4   0.0    0.0079       9.5     375     451 ..     311     394 .]     243     394 .] 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.65
                   HHHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEardrvG 27
                   aGL +A q  ++G++V++l     +G
     EHT99058.1 14 AGLFCAAQAGQRGRRVLLLDNGKKPG 39
                   9*****************98776665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00026
                    CEETTHTHHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S CS
  Amino_oxidase 203 llprgGlsqlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTv 260
                    l++++  +q+++ l +  e++++++rl+++  +++r++ g+ ++l +g++v+a + v+++
     EHT99058.1 101 LFCDESAQQMVDLLLAecEKGRVTLRLRSEILSVTRDEAGYVLQL-NGSSVQAEKLVIAS 159
                    4445556677777666799************************98.78888999999997 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0079
                    GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCH....HCSTTEEE.SGGGCTT..TTTS.HHHHHHHHHHHHHHH CS
  Amino_oxidase 375 eevpepkatlvtrWhtdplargsysyvsvgpghedydplakp....egdprlffAGehtsre..ypgt.vegAilSGlraAari 451
                    ++ ++    + ++W+ +p+    y +  v+ g+ d  +l +     + +p+l+f Ge +  +  + g+ ++ A++S++  A+++
     EHT99058.1 311 SKQQSALVQTLHNWQVQPNGTEGYRTAEVTLGGVDTTQLSSKtmeaRDVPGLYFIGEVVDVTgwLGGYnFQWAWSSAWACAQAV 394
                    445555557889**99999999999999999999999998888999***********876331134668888999999999886 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.6e-06    0.0043       2     154 ..       8     160 ..       7     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.6e-06
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddp....ptfaeWlrerga...leeaeeldpdd 89 
                    ++GaG++Gl ++++  +r       ++ l d+ ++pg +++  +   ++  +N+ ++   ++ ++p      +a++ +       + +   +  ++
     EHT99058.1   8 VIGAGAAGLFCAAQAGQR-----GRRVLLLDNgKKPG-RKILMSGGGRCNFTNLYTEPAAYLSNNPhfckSALARYTQWDFIdlvN-RHGIAWHEK 96 
                    8**********9998888.....5899*****8999*.777777778999*****9999999998888884445544444322211.111222446 PP

  NAD_binding_9  90 fvpRalyGrYlrdlfeellarlpegvtvev.hraevvdleeradgqavlladgaslaadaVvLAlG 154
                     +   +  +  +++++ lla++++g +v++ +r+e+++++++++g+ vl+ +g+s++a+++v+A G
     EHT99058.1  97 TLGQLFCDESAQQMVDLLLAECEKG-RVTLrLRSEILSVTRDEAGY-VLQLNGSSVQAEKLVIASG 160
                    6777777777888888888899766.555526*************7.7899*************99 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.016      18      56 ..       4      41 ..       1      64 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                 Dv+++GaG++GL +a   +++ + +v++l++   pG  
  EHT99058.1  4 FDVIVIGAGAAGLFCAAQAGQR-GRRVLLLDNGKKPGRK 41
                6*******************99.99**999987777765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00074      0.88       2      35 ..       6      39 ..       5      44 .. 0.92
   2 ?    2.8   0.0      0.15   1.8e+02      41      73 ..     109     142 ..      95     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00074
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v+v+G+G  gl +A+ + + g +V ++++++k+ 
  EHT99058.1  6 VIVIGAGAAGLFCAAQAGQRGRRVLLLDNGKKPG 39
                89***************************99987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.E CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedg.v 73 
                 ++ ++l  + ek  ++++l +++ +++ +e g v
  EHT99058.1 109 QMVDLLLAECEKGRVTLRLRSEILSVTRDEAGyV 142
                 4455557777888**************9999855 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00011      0.13       2      33 ..       4      35 ..       3      42 .. 0.90
   2 ?   -0.9   0.0      0.65   7.7e+02     103     143 ..     107     146 ..      70     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                    dV+++GaG aGl  a    ++G rv+l++  
     EHT99058.1  4 FDVIVIGAGAAGLFCAAQAGQRGRRVLLLDNG 35
                   69**************************9975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.65
                    -HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEE CS
  FAD_binding_3 103 pqteleriLvehaeerg.lqvrfktevesleqdeegvtaevr 143
                     q++++ +L+e   e+g +++r   e++s+++de g   ++ 
     EHT99058.1 107 AQQMVDLLLAEC--EKGrVTLRLRSEILSVTRDEAGYVLQLN 146
                    466666666665..5555999999******999988554444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.3e-05     0.075      30      63 ..       5      38 ..       1      72 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.3e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpar 63
                  v+viG+G aGl  +a a + g +V +lD  ++ 
   EHT99058.1  5 DVIVIGAGAAGLFCAAQAGQRGRRVLLLDNGKKP 38
                 69**************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2782.11
//
Query:       EHT99059.1  [L=500]
Description: low-affinity inorganic phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-90  301.8  13.3    6.6e-90  301.5  13.3    1.1  1  PHO4          Phosphate transporter family
    0.00047   20.1   2.3     0.0082   16.1   0.0    2.7  2  Myc_target_1  Myc target protein 1


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.5  13.3   7.4e-94   6.6e-90       1     337 []      30     489 ..      30     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: 301.5 bits;  conditional E-value: 7.4e-94
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf...dpselmlgmlaallgaavwlllatvlglPvStthslvGa 96 
                 +G++D+ana+at+++++a++ + Av++a++f+f+G++l G +Va +i + +  ++l     ++  +++++++ll+a++w+l +++lglP+S++h+l+Ga
  EHT99059.1  30 NGFHDTANAVATVIYTRAMRAQLAVLMAGVFNFFGVLLGGLSVAYAIVHMLP-TDLLlnvGSAHGLAMVFSMLLAAIIWNLGTWYLGLPASSSHTLIGA 127
                 8************************************************885.45444454444559******************************** PP

        PHO4  97 liGaalaa.....egg.eavkwkklvkivlswvlsPllggiiaallfllvkrlilvk.eklknalralpvlvlvtiailalsilfkgesk..kddeete 186
                 +iG++l++     +++ +a++ +k+++i+ls++lsP++g++ia  l++l++r+  ++ +k ++ ++++p                    +   d+++++
  EHT99059.1 128 IIGIGLTNalmsgTSVvDALNIPKVLNIFLSLILSPIVGLVIAGSLIFLLRRY--WSnTKKRARIHMTPAD------------------RekIDGKKKP 206
                 *******9887543333666669******************************..4427777888888833..................2334555555 PP

        PHO4 187 klf.kflqvvsaalvsfahGanDvanaiGpllaali............................................................... 221
                  ++ +++++vsa+ vs++hGanD+++ iG+++++li                                                               
  EHT99059.1 207 PFWtRTALIVSAIGVSYSHGANDGQKGIGLIMLVLIgvapagfvvnmnascyditrtrdavnhleqyyqqhseslthiiqmappklptpeeveptspke 305
                 5546***************************99999*************************************************************** PP

        PHO4 222 .....................................................................siykaskevplwvlllgglaialGlllgGk 251
                                                                                      +++++ +  p+w++++++la+++G+++g++
  EHT99059.1 306 fhcdsaralqavqraqvllnnlqnyndlsveqrsqmrrlllcisdtadkaaklpetspedkrflgklkgDLLNTIEYAPVWIIMAVALALGIGTMIGWR 404
                 **************************************************************9998888444433345********************* PP

        PHO4 252 rviktvGekit.kkltpsrGfaaelaaaltvllasklglPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsalls 337
                 rv  t+Geki  k +t+++G++a+++aa+++ +as++g+PvStTh+l+++v+G++l++++  +++ k+++ni++aWv+Tlpv++lls
  EHT99059.1 405 RVATTIGEKIGkKGMTYAQGMSAQVTAAVSIGIASYTGMPVSTTHILSSSVAGTMLVDGG--GLQSKTIKNIAMAWVFTLPVCILLS 489
                 ***********778********************************************75..**********************997 PP

>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5     0.014   1.2e+02      24      48 ..      91     115 ..      76     125 .. 0.82
   2 !   16.1   0.0   9.2e-07    0.0082      18      65 ..     152     200 ..     139     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.014
  Myc_target_1  24 aFcvSmvvGLllgaliyvlltwlsr 48 
                   a  + mv  +ll a+i+ l tw   
    EHT99059.1  91 AHGLAMVFSMLLAAIIWNLGTWYLG 115
                   66799*****************765 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 9.2e-07
  Myc_target_1  18 ledlilaFcvSmvvGLll.galiyvlltwlsrrrasaritrrssrrsrs 65 
                   + ++ l+  +S +vGL++ g+li++l  + s ++  ari  +++ r++ 
    EHT99059.1 152 VLNIFLSLILSPIVGLVIaGSLIFLLRRYWSNTKKRARIHMTPADREKI 200
                   55889***********99688*******************999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 3874.42
//
Query:       EHT99060.1  [L=111]
Description: putative universal stress (ethanol tolerance) protein B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-53  179.4   0.5    1.5e-53  179.3   0.5    1.0  1  UspB      Universal stress protein B (UspB)


Domain annotation for each model (and alignments):
>> UspB  Universal stress protein B (UspB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.5   8.3e-58   1.5e-53       1     107 []       1     107 [.       1     107 [. 0.99

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 8.3e-58
        UspB   1 misgvalllalllvtvinlirylsslrallsvlreadPllyqqvdGrgfftthgqlskqvrllryiksreyldhhdpevilkcervrklfilssallvv 99 
                 mis++al++al++v+++n++ry+sslrall+vlr +dPllyq+vdG gfft+hgq  kqvrl+ryi++r+yldhhd+e+i +cervr lf+l+s+l+++
  EHT99060.1   1 MISTIALFWALCVVCLVNMARYFSSLRALLVVLRGCDPLLYQYVDGAGFFTSHGQPGKQVRLVRYIWARRYLDHHDDEFIRRCERVRGLFLLTSSLCGL 99 
                 9************************************************************************************************** PP

        UspB 100 vvvsllll 107
                 v++sl++l
  EHT99060.1 100 VIISLIAL 107
                 *****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 913.30
//
Query:       EHT99061.1  [L=145]
Description: universal stress global response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.8   0.0    1.2e-21   77.7   0.0    1.0  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   6.8e-26   1.2e-21       2     141 .]       3     138 ..       2     138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 6.8e-26
                 -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHH CS
         Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevae 100
                 yk+Il+avD s+es+ ++++A+ la+ ++a++ l+hv    ++ +++  d   ++ ++  +e++  a++ +   +ag +++e+   +gd +++++++ +
  EHT99061.1   3 YKHILIAVDLSPESQLLVDKAVSLARPYDAKISLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHLALK-NLSDAAGYPITETLSGSGDLGQVLVDAIK 100
                 9**************************************************************999997.***************************** PP

                 HTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 101 eedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 ++d+d++V+G+++ +  s+  l S ++++++ +++++l+V+
  EHT99061.1 101 KYDVDMVVCGHHQ-DFWSK--LMSSARQLINTVHIDMLIVP 138
                 *************.****9..88*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1208.26
//
Query:       EHT99062.1  [L=250]
Description: putative SAM-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.4e-107  356.2   0.0   7.3e-107  356.0   0.0    1.0  1  SAM_MT    Putative SAM-dependent methyltransferase


Domain annotation for each model (and alignments):
>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.0   0.0  4.1e-111  7.3e-107       2     230 ..      19     246 ..      18     247 .. 0.99

  Alignments for each domain:
  == domain 1  score: 356.0 bits;  conditional E-value: 4.1e-111
      SAM_MT   2 laerlklesdeeaelaLvlteerlelrkldekklgavlvdfvsgaaahRrkfgggrgeaiakavglkkgvlptvlDaTaGlGrDafvlaslGckvtliE 100
                 laer++l++ ++a laLv t+++lelrk+de+klg ++vdfvsga+ahRr+fgggrgea+akavg+k+++lp+v+DaTaGlGrDafvla+lGc+v+++E
  EHT99062.1  19 LAERWQLTHCDDAVLALVKTATHLELRKRDEPKLGGIFVDFVSGAMAHRRRFGGGRGEAVAKAVGIKGSYLPDVVDATAGLGRDAFVLAALGCRVRMLE 117
                 789************************************************************************************************ PP

      SAM_MT 101 rhpvvaaLLedglkRakqdaeigellaerlkLlaasslealakleeekpdvvYlDPmyPhkkksalvKKemrvfqqlvGadedadeLleaalalakkRv 199
                 rhpvvaaLLedgl R +qdaeig +l+erl+L++ass++al++++   pdvvYlDPmyPh++ksa+vKKemrvfq+lvGadedad+Lle+a++lakkR+
  EHT99062.1 118 RHPVVAALLEDGLARGYQDAEIGGWLRERLSLIHASSIQALTDIAP-PPDVVYLDPMYPHRQKSAMVKKEMRVFQSLVGADEDADALLEPARRLAKKRI 215
                 **********************************************.**************************************************** PP

      SAM_MT 200 vVKrPkkaevlaekkpsasietkkhRfDiYl 230
                 vVKrP++a++la+  ++ ++ tk+hRfDiY 
  EHT99062.1 216 VVKRPDYAPPLAGVGTQSAVVTKSHRFDIYP 246
                 ******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2210.62
//
Query:       EHT99063.1  [L=680]
Description: oligopeptidase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-171  572.1   0.0   1.5e-171  571.7   0.0    1.1  1  Peptidase_M3  Peptidase family M3


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.7   0.0  8.3e-176  1.5e-171       1     457 [.     222     677 ..     222     678 .. 0.98

  Alignments for each domain:
  == domain 1  score: 571.7 bits;  conditional E-value: 8.3e-176
                   HHHC-S-HHHHHHHHHHHCTTTCCSS.....THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   1 llkespdrelRkeayeashskaaeqrnt...lensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllke 94 
                   +++++++++lR+e+y+a++++a++q ++   ++n +++ e l lr+elA+llg++s+a+++l++kma++p +v dfl++l +++rp++ekel++l++
    EHT99063.1 222 VMTYCDNAALREEMYRAYSTRASDQGPNagkWDNGPIMAEELALRHELAQLLGFDSFADKSLATKMAQSPAQVIDFLNDLADRARPQGEKELAQLRA 318
                   69**********************9998888****************************************************************** PP

                   HHHHCCT-SSS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEE CS
  Peptidase_M3  95 lkkkelglegelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylD 191
                   ++kke g+e +++pwD+ YY ekq+++ y++++e+l++yfp  ++++Gl+e++++++Gi+ +e++d+  +v+h+dVr+++++de  s++l g++ylD
    EHT99063.1 319 FAKKEYGVE-TMNPWDLTYYGEKQKQHLYTISDEQLRPYFPESRAVSGLFEVVKRIYGITAKERTDV--DVYHPDVRFFDLFDE--SGELRGSFYLD 410
                   *********.*********************************************************..***************..*********** PP

                   EC--TTS-SS-EEEEEE--B..TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT.-S-CCCCCHHHHHHHH CS
  Peptidase_M3 192 lyerkgKrggAasfglvksr..edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgt.nvpidfvElpSqlmEn 285
                   ly+r++KrggA++ ++v ++   dg++q+pv+yl++Nf++p+++kP+L+t+dev tLfHEfGH++H++l+r e + vsg+  vp+d+vElpSq+mEn
    EHT99063.1 411 LYAREHKRGGAWMDDCVGQMrkADGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLTRVEAAGVSGInGVPWDAVELPSQFMEN 507
                   ******************99644*********************************************************99*************** PP

                   GGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHHCTTSCTTBTTSSGGGC-CCC CS
  Peptidase_M3 286 lltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqasFghl 382
                   +++epe+l+++s+hyetge++pe+ll+k+++akn++aal++lrql f+ fd++lH+e ++e+    ++let++e+++k++ +p++++ ++++ F+h+
    EHT99063.1 508 WCWEPEALAFISGHYETGEPLPEDLLNKMLAAKNYQAALFILRQLEFGLFDFRLHTEFNPEKG--AQILETLREVKSKVAVVPSPEWGRFPHAFSHI 602
                   ************************************************************986..45****************************** PP

                   HTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 383 fahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                   fa+gYaa+YYsyl+a vla+d++++f+ee+++nretG+++ ++iL rGgs++p+el+k+f+grep+ da+l+++g
    EHT99063.1 603 FAGGYAAGYYSYLWADVLAADAYSRFEEEGIFNRETGQSFLDNILTRGGSEEPMELFKRFRGREPQLDAMLEHYG 677
                   *************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5011.53
//
Query:       EHT99064.1  [L=375]
Description: putative phage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-16   59.3   0.0      1e-15   58.0   0.0    1.6  2  Phage_integrase  Phage integrase family
    4.5e-13   49.4   0.1    9.7e-13   48.3   0.1    1.6  1  Arm-DNA-bind_3   Arm DNA-binding domain
     0.0005   20.3   0.0     0.0016   18.7   0.0    1.9  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.65   3.9e+03      73      96 ..      74      99 ..      44     134 .. 0.63
   2 !   58.0   0.0   1.7e-19     1e-15       2     169 ..     180     340 ..     179     342 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.65
                     T..HHHHHHHHHHHHHHCHCCTTTSB CS
  Phage_integrase 73 s..eealellkellskaleeaeksel 96
                     +  +++  +l+e+++ +l+++ +   
       EHT99064.1 74 TvrDAINYWLTEYVDGNLVNDTRYRE 99
                     13366666666666666444444444 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 1.7e-19
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeks 94 
                      vl   e++ ll+al++   + + ++++ ll++ G+R+ El+  ++ + dl+++ ++v+e+++K++ +++ p+++ + +++++ll+++     ++
       EHT99064.1 180 VLSNRELRDLLTALHSdFFAPYYQNIIFLLLAFGARTVELRLSEIREWDLRENLWTVPEKHSKSGEKIIRPIPDRLIPMITRLLEEN-----RH 268
                      7889999********99778888999999**********************************************************.....77 PP

                      SBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase  95 ellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                      +  ++ +    +++ +v+++   ++++ g +++++ H+lR++f+t ++  g++++ v+ llGHs      +Y+++
       EHT99064.1 269 TGYLLGEM---KKNTAVSQVGAYVAKRLGHDEHWRLHDLRRTFSTYMNDLGIPPHIVELLLGHSLGGVMAVYNRS 340
                      77777762...334444444455566788899********************************99999999886 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   1.6e-16   9.7e-13      23      69 ..       2      60 ..       1      64 [. 0.95

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.6e-16
  Arm-DNA-bind_3 23 lrvtpsGaktfvlryr............lGrypavslaeARkkarelraliaqGiDPae 69
                    +r+t++G+ t++++yr            lGryp++sl++AR+ ++++r+++a+G DP+ 
      EHT99064.1  2 VRITKTGSVTWLYKYRlggreaeaklatLGRYPDLSLSKARELRDQCRQWLAEGLDPQR 60
                    8************************9877****************************85 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.6e-07    0.0016       1      47 [.      74     119 ..      74     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-07
                      ..HHHHHHHHHHHH.HHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--H CS
  Phage_int_SAM_3   1 tFsefleeWleeyk.prvkesTyatyksiiknhIlPyFgniklkkItp 47 
                      t+++  ++Wl ey   ++   T+  y+  ++nhI+P++g++ l++ ++
       EHT99064.1  74 TVRDAINYWLTEYVdGNLVNDTR--YRERFDNHIMPHIGDMALSDCET 119
                      7889999*****99999999996..6788**************99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2644.61
//
Query:       EHT99065.1  [L=102]
Description: phage transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-10   38.6   0.1    8.9e-10   38.2   0.1    1.1  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1     5e-14   8.9e-10       3      51 .]      28      76 ..      26      76 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 5e-14
  Phage_AlpA  3 ilrlreVeqktglsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                 +r +e  ++t+lsrs+ ++++++g+FP + + G +s +Wl s++  W+
  EHT99065.1 28 RIREDECGEITSLSRSSRWKMEQEGRFPARCHFGRNSCAWLLSDVLWWV 76
                58999****************************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 798.17
//
Query:       EHT99066.1  [L=249]
Description: putative CI repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-29  102.9   0.1    1.9e-29  102.1   0.1    1.4  1  Phage_ASH  Ash protein family


Domain annotation for each model (and alignments):
>> Phage_ASH  Ash protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.1     1e-33   1.9e-29       2     107 .]      93     200 ..      92     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 1e-33
   Phage_ASH   2 sekalAKSvagignpeikkatndat.plvffvrsalthkefrnkalss.MVAlagqpsgwPvsavagpanpvratthkeiavSggsltnklkeaaimat 98 
                    ++AKSv g++np++  at+da+ + vff++ a++h++ ++      MVAl gqpsgwPvs  ag+a+p+++t+ +e+++Sgg+ +++l e ++m+t
  EHT99066.1  93 LLPVAAKSVTGRSNPCMLLATPDAIyNRVFFCVDASAHPFTAALIRTVsMVALVGQPSGWPVSSNAGIATPASVTAPYERSNSGGDSFRLLLEFIAMMT 191
                 55689*******************745677*********9666553336************************************************** PP

   Phage_ASH  99 iplsthskf 107
                 ip+++h++f
  EHT99066.1 192 IPVQNHPNF 200
                 ******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2238.44
//
Query:       EHT99067.1  [L=292]
Description: hypothetical protein CKS_0978 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-09   37.5   0.2    6.8e-08   32.5   0.2    2.1  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   3.8e-12   6.8e-08       6     168 ..      37     273 ..      33     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.8e-12
                      HHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS.... CS
  Phage_integrase   6 deverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse.... 95 
                      +e ++l + ++++++ +  l   + + tG R+s++++Lr++++++e g +++   + K+ k+ +   +++  e ++++ ++a + a ++     
       EHT99067.1  37 EEQRKLRERIQQTQPEWLLLWWDISVCTGWRTSDVCALRYSCINWETGQATI--VVAKQTKAAEARATRKGIEIVRQQRKDAARLAADHIaymk 128
                      56666777777788889999999**************************999..8888888888888888888888888888222333325777 PP

                      .........................................................BSSBET.........TSSB--HHHHHHHHHHHHHH.. CS
  Phage_integrase  96 .........................................................llfask.........rgkplsrqtvrkafkravee.. 121
                                                                               l+f +           +  ++rqt++k ++++ +   
       EHT99067.1 129 wdsvscdelaadmtaeeqaivfelvsradvkhdtkqlppgiikrlrnrlesnfvdddLVFSRSqiesnrchsLEGSVTRQTIWKKLHSVMQWfs 222
                      88888899999999999999999999999999999****9999999999999999998887778888888887777888888888877776654 PP

                      ..CT-SSC--TTHHHHHHHHHHHHHCTSHHHH..HHHHT-SSCCHHHHHHC CS
  Phage_integrase 122 ..agiekpltpHtlRhsfataLleagvdlrvv..qkllGHssisttqiYth 168
                         +++ +l+  + R+ +a +L+ ag  +  +   ++lGHs+ ++t++Y +
       EHT99067.1 223 rfVNTKLRLSAYSSRKIAAFNLMSAGGEQGLLiaSEMLGHSNPAITRTYLQ 273
                      4556669*******************9866542289*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 2726.18
//
Query:       EHT99068.1  [L=74]
Description: hypothetical protein CKS_0979 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 561.34
//
Query:       EHT99069.1  [L=772]
Description: putative phage primase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-14   51.8   1.9    1.7e-13   50.7   0.7    2.3  2  Toprim_3         Toprim domain
    9.8e-13   48.2   6.7      2e-12   47.2   6.7    1.5  1  Prim_Zn_Ribbon   Zinc-binding domain of primase-helicase
    8.4e-10   39.0   0.0    4.3e-09   36.7   0.0    2.2  3  Pox_D5           Poxvirus D5 protein-like
    2.9e-08   34.1   0.0    1.2e-07   32.2   0.0    2.0  2  D5_N             D5 N terminal like
     0.0002   21.7   0.1    0.00064   20.1   0.1    1.9  1  Toprim_2         Toprim-like
    0.00035   20.5   2.0    0.00076   19.4   2.0    1.5  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
    0.00043   20.7   0.1     0.0016   18.9   0.1    2.0  1  Toprim_4         Toprim domain
    0.00059   19.3   0.1      0.001   18.6   0.1    1.4  1  PALP             Pyridoxal-phosphate dependent enzyme
     0.0052   16.3   2.3       0.01   15.3   2.3    1.4  1  TF_Zn_Ribbon     TFIIB zinc-binding
  ------ inclusion threshold ------
      0.014   16.0   0.1      0.032   14.8   0.1    1.6  1  RFX_DNA_binding  RFX DNA-binding domain
      0.022   14.6   0.0      0.068   13.0   0.0    1.8  1  zf-CHC2          CHC2 zinc finger
      0.037   14.4   0.6       0.11   12.8   0.6    1.8  1  Lar_restr_allev  Restriction alleviation protein Lar
      0.054   13.4   3.2       0.14   12.1   3.2    1.7  1  Nudix_N_2        Nudix N-terminal
      0.058   13.2   0.2       0.47   10.2   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain
      0.091   13.4   0.0        7.4    7.3   0.0    2.6  2  RhoGAP-FF1       p190-A and -B Rho GAPs FF domain
       0.15   12.1   0.2       0.34   10.9   0.2    1.6  1  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
       0.66    9.7   8.2        2.2    8.0   8.2    1.9  1  zf-RRN7          Zinc-finger of RNA-polymerase I-specific TFI


Domain annotation for each model (and alignments):
>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.7   1.6e-16   1.7e-13       1      93 [.     188     292 ..     188     294 .. 0.91
   2 ?   -2.8   0.0         8   8.5e+03       7      36 ..     429     461 ..     427     500 .. 0.64

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.6e-16
    Toprim_3   1 tliivEGietaLsileartgaaviAllsaanlkaiawp...e.rgkrvviaaDnDaand...........Greaaeklaerleaagieavllep.aege 83 
                 t+i++EG++t Ls+++ +++a ++++l+a+nl a+a     + +  r++iaaDnD ++            G+ aae++a+++++     v+l+p +e++
  EHT99069.1 188 TVIVAEGLATTLSAQQMQPDALAVVALDAGNLPAVAAVlreKyPDARIIIAADNDIHALsdgqttqkpntGKLAAEQAAKAVNG----WVALPPtEEKA 282
                 589***********999***************99998877667999***********99*******999999999999999997....88888877778 PP

    Toprim_3  84 DwndvlqkeG 93 
                 Dwnd++q +G
  EHT99069.1 283 DWNDYHQLHG 292
                 *******998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8
    Toprim_3   7 GietaLsi...leartgaaviAllsaanlkaia 36 
                 G++ta s+   l++  g+  +A++  +nl   a
  EHT99069.1 429 GAFTAHSAdnwLMNHNGIEYTAATPGENLHDNA 461
                 666666666665666666777777666666333 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   6.7   1.9e-15     2e-12       3      38 .]      32      66 ..      30      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.9e-15
                    EE--TTTT-TTTEEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon  3 hspCPvCGGrDrFrfddkdgrGtwfCrqCggggdgl 38
                    ++pCPvCGG +r+rfdd + rGt+ C++C g+g+gl
      EHT99069.1 32 EGPCPVCGGDTRYRFDDIEQRGTYHCSHC-GAGTGL 66
                    79***************************.****96 PP

>> Pox_D5  Poxvirus D5 protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.8   6.1e+03      37      68 ..     363     397 ..     359     408 .. 0.75
   2 ?   -2.2   0.0       5.9   6.2e+03       6      29 ..     614     637 ..     613     638 .. 0.83
   3 !   36.7   0.0   4.1e-12   4.3e-09      18      79 ..     703     767 ..     674     772 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.8
      Pox_D5  37 kngykpvlskrtFqkrlkkileeg...fekkkkkk 68 
                 +ng+++++s  ++ ++++ i +e+   f k+  ++
  EHT99069.1 363 QNGVWEIISTLQLSREMAVIYNEHqtnFGKRTINN 397
                 68888888888999999999999445588888774 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.9
      Pox_D5   6 vldFveelfeeekstrvpsdvlYe 29 
                 +++F ++++ee+k +++  +  +e
  EHT99069.1 614 IFQFNNRVKEEDKDPHLSEKIAHE 637
                 899*******99999988777665 PP

  == domain 3  score: 36.7 bits;  conditional E-value: 4.1e-12
      Pox_D5  18 kstrvpsdvlYeaYkafcekngykpvlskrtFqkrlkkilee...gfekkkkkkgqqpneyleyi 79 
                 ++ r p+++lY+ Y+ f+e  g+ ++ls ++F+k +k++ +e   ++  +  k   q+n+++++ 
  EHT99069.1 703 DGIRQPRRYLYHLYLDFMEYQGLSKPLSVTEFGKAIKEAAKEyksEYLTRTIKGRRQTNVQITDK 767
                 78899*************************************9766*******999999998876 PP

>> D5_N  D5 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.4   3.6e+03       2      66 ..     224     291 ..     223     320 .. 0.69
   2 !   32.2   0.0   1.1e-10   1.2e-07       4     147 ..     343     469 ..     338     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.4
        D5_N   2 kiladrygkd.vryvkglgewyv.wdGthWeede..keaireladkvaeaiaeeaeeaksalkalkkfa 66 
                 ++l++ y ++ ++   +++  ++  dG++ ++ +  k a+ ++a++v ++ a   +e+k  + ++++  
  EHT99069.1 224 AVLREKYPDArIIIAADND-IHAlSDGQTTQKPNtgKLAAEQAAKAVNGWVALPPTEEKADWNDYHQLH 291
                 6777788666666666666.4454788865555567888888888888888887788888888888754 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.1e-10
        D5_N   4 ladrygkd.vryvkglgewyvwdGthWeedekeaireladkvaeaiaeeaeeaksalkalkkfakssrskkkvdnvlreaaelprldleideldadpll 101
                 l +ry  d ++ +++ + +y +++ +We      + +l +++a  + e++                +  k+ ++n+++++      ++ + + + +++l
  EHT99069.1 343 LSQRY--DgICIHPESEAFYIYQNGVWE---IISTLQLSREMAVIYNEHQ---------------TNFGKRTINNAVEAL-----KVVAPIMGEPRRNL 416
                 55566..338888888888887666688...6678888888887778877...............9999**********9.....88999999999*** PP

        D5_N 102 lafaNGvldlktgelrdhepedyltkitpvdy.........dpdadcptfkewld 147
                 ++faNGv+d   g ++ h+ +++l ++ +++y         ++  ++p f++wl 
  EHT99069.1 417 IPFANGVYDMASGAFTAHSADNWLMNHNGIEYtaatpgenlHD--NAPNFHKWLS 469
                 ********************************55554444433..8899*99996 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1     6e-07   0.00064       1      90 []     190     288 ..     190     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6e-07
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalteaalkllerypekkvvlalDnD....kaGrkaakrlaellreag....vrekirelp..egkDwnel 89 
                 +v+Eg    lS  q++++   +vval   +l+  a+ l e+yp++++++a DnD      G++  k    +l  ++    v+ +++ +p  e+ Dwn++
  EHT99069.1 190 IVAEGLATTLSAQQMQPD-ALAVVALDAGNLPAVAAVLREKYPDARIIIAADNDihalSDGQTTQKPNTGKLAAEQaakaVNGWVALPPteEKADWNDY 287
                 689999999*****9996.899****888788888888889999**********4444356666555555554333455688899988875667****9 PP

    Toprim_2  90 l 90 
                 +
  EHT99069.1 288 H 288
                 6 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.0   7.2e-07   0.00076      19      44 ..      34      61 ..      29      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.2e-07
  Zn_Tnp_IS1595 19 fvCPhCgsrkayrikt...rglfqCkeCr 44
                   + CP Cg+++ yr+ +   rg ++C++C+
     EHT99069.1 34 P-CPVCGGDTRYRFDDieqRGTYHCSHCG 61
                   5.*******9998888888*********8 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.5e-06    0.0016       2      75 ..     188     266 ..     187     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-06
    Toprim_4   2 eiiiVEgyaDvlaleka..giknvvavlggalspldgirpeklktenlveaekkvkevilaldgDa.............eGeataerla 75 
                 ++i+ Eg a+ l++ ++      vva   g+l++++ + +ek++            ++i+a d+D               G+ +ae++a
  EHT99069.1 188 TVIVAEGLATTLSAQQMqpDALAVVALDAGNLPAVAAVLREKYPD----------ARIIIAADNDIhalsdgqttqkpnTGKLAAEQAA 266
                 79***************878889999999****************..........9**********99995555555555555555555 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   9.5e-07     0.001     106     214 ..     160     282 ..     152     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.5e-07
                 EECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS. CS
        PALP 106 evggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslra 204
                 +     d  ++++a   ++ + + +++++++p  +   + ++  + +q+  +pda+ v +  +g++ ++aa l+e+ pd r+i++  +  +al ++  +
  EHT99069.1 160 KP----DGGKRLVAGTVKK-GAFCVLNSGGSPETVIVAEGLATTLSAQQ-MQPDALAVVALDAGNLPAVAAVLREKYPDARIIIAADNDIHALSDGQTT 252
                 54....4455566666777.88999999999998888888888887555.58*********************************************88 PP

                 .S.SS..B.....................S CS
        PALP 205 grrvtvpvs....................d 214
                  ++ t + +                     
  EHT99069.1 253 QKPNTGKLAaeqaakavngwvalppteekA 282
                 888887777644443333333333333330 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.3   9.9e-06      0.01       3      27 ..      35      62 ..      33      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.9e-06
                  ETTTTCEE.CHEE..TSTTCEEESSSSB CS
  TF_Zn_Ribbon  3 CPnCgstn.lveD..pergelvCtdCGl 27
                  CP+Cg+++ + +D  + rg++ C+ CG+
    EHT99069.1 35 CPVCGGDTrYRFDdiEQRGTYHCSHCGA 62
                  ******88788888************95 PP

>> RFX_DNA_binding  RFX DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1     3e-05     0.032      20      53 ..     707     741 ..     700     753 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
  RFX_DNA_binding  20 vprqevYaeYlsicsklkl.kplnaasFgKlirsv 53 
                       pr+ +Y+ Yl++++ ++l kpl+ ++FgK i++ 
       EHT99069.1 707 QPRRYLYHLYLDFMEYQGLsKPLSVTEFGKAIKEA 741
                      5899****************************985 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.5e-05     0.068      45      93 ..      45      92 ..      24      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
     zf-CHC2 45 sftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklglel 93
                 f   ++++ y+C  Cga G  ++ +m++ ++s  +a+  +a+++ l +
  EHT99069.1 45 RFDDIEQRGTYHCSHCGA-GTGLDLVMKVRQCSVRDAAVLVAEAMALPM 92
                56677899********97.789*****************9999988766 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   0.00011      0.11       5      37 ..      34      63 ..      33      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
  Lar_restr_allev  5 pCPfCggravlersqrvvaeigqcvyCadCgas 37
                     pCP Cgg+  + ++   + +   + +C  Cga+
       EHT99069.1 34 PCPVCGGDTRYRFDDIEQRG---TYHCSHCGAG 63
                     9************9999887...9********3 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.2   0.00013      0.14       3      29 ..      35      61 ..      35      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                -TTT--B-EEE--TT-SS-EEEETTTT CS
   Nudix_N_2  3 CsqCGtpvelripdgDnreRlvCpaCg 29
                C+ CG+ +++r  d ++r  + C++Cg
  EHT99069.1 35 CPVCGGDTRYRFDDIEQRGTYHCSHCG 61
                **************************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   1.2e+03      23      37 ..     108     123 ..     100     126 .. 0.77
   2 ?   10.2   0.1   0.00044      0.47      27      58 ..     502     533 ..     493     536 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
      AAA_29  23 g.atlltGpsGsGKST 37 
                 + +  ++G+s sG S+
  EHT99069.1 108 DkVSAMAGQSKSGQSA 123
                 4478899******997 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00044
      AAA_29  27 ltGpsGsGKSTllDAiqalLvpak.kvrfNkaa 58 
                 +tG  GsGKS +   i++lL +++ +++ N aa
  EHT99069.1 502 ITGSGGSGKSVFT-QIATLLAGQHnTASGNMAA 533
                 9*********998.8999999999556666666 PP

>> RhoGAP-FF1  p190-A and -B Rho GAPs FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.007       7.4      40      61 ..     279     300 ..     275     305 .. 0.92
   2 ?    3.0   0.0      0.15   1.6e+02      37      67 ..     488     519 ..     473     527 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.007
  RhoGAP-FF1  40 skekefeeyvelfGtekakklF 61 
                 ++++++++y +l G e+a k F
  EHT99069.1 279 EEKADWNDYHQLHGLEAATKAF 300
                 5789****************99 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
  RhoGAP-FF1  37 kklskekefeeyvelfGte.kakklFrrhikk 67 
                   l+++ +++ ++e+ G+  ++k++F++    
  EHT99069.1 488 MVLANRYDWQLFLEITGSGgSGKSVFTQIATL 519
                 57999************962678899986555 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00032      0.34       3      26 ..      33      61 ..      31      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
  PhnA_Zn_Ribbon  3 pkCplCaSeytY.....edgallvCpeCa 26
                    ++Cp C+ ++ Y     e +  + C++C+
      EHT99069.1 33 GPCPVCGGDTRYrfddiEQRGTYHCSHCG 61
                    79**************************7 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.2    0.0021       2.2       4      28 ..      32      61 ..      30      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
     zf-RRN7  4 gppCgvCgc.rsftldd....GfyyCrrCh 28
                + pC+vCg+ +++++dd    G+y C +C+
  EHT99069.1 32 EGPCPVCGGdTRYRFDDieqrGTYHCSHCG 61
                679******989999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 5860.71
//
Query:       EHT99070.1  [L=187]
Description: hypothetical protein CKS_0981 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1473.02
//
Query:       EHT99071.1  [L=55]
Description: hypothetical protein CKS_0982 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.0   5.2        0.2   11.8   5.2    1.0  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus
       0.63   10.3  10.3       0.93    9.8  10.3    1.3  1  TPX2      Targeting protein for Xklp2 (TPX2)


Domain annotation for each model (and alignments):
>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.2   2.2e-05       0.2     102     148 ..       7      53 ..       2      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
     UPF0242 102 keeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekq 148
                  +e  +k +e  r  ++n++Lq   ++  e  +e ++e+e++L++++
  EHT99071.1   7 DREAMQKRNEFDRTVQRNENLQRNVNDFWERQAEKQQEAEDRLKKQR 53 
                 56788999************************************985 PP

>> TPX2  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  10.3    0.0001      0.93       8      47 ..      12      53 ..       5      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
        TPX2  8 ekRkeFdkkleekekakeaek..eereakkkeeeeeeikqLR 47
                +kR eFd+++   e+ +       er+a+k++e e  +k+ R
  EHT99071.1 12 QKRNEFDRTVQRNENLQRNVNdfWERQAEKQQEAEDRLKKQR 53
                8**********9999999888667888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1800  (0.100396); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 497.95
//
Query:       EHT99072.1  [L=64]
Description: hypothetical protein CKS_0983 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 468.55
//
Query:       EHT99073.1  [L=200]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.23   11.7   0.0    1.6  1  DNA_Packaging_2  DNA packaging protein


Domain annotation for each model (and alignments):
>> DNA_Packaging_2  DNA packaging protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.23      40      62 ..       7      29 ..       3      42 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
  DNA_Packaging_2 40 LkDkhkeqiGklqPDvtilGGla 62
                     L+++h   iG + PDvti   + 
       EHT99073.1  7 LLNRHSRSIGTVIPDVTISEKHY 29
                     89***************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1574.27
//
Query:       EHT99074.1  [L=355]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2639.07
//
Query:       EHT99075.1  [L=208]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-30  103.3   0.2    1.7e-29  101.8   0.0    1.9  2  Gp138_N   Phage protein Gp138 N-terminal domain


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   9.5e-34   1.7e-29      21      98 .]      12      89 ..       5      89 .. 0.93
   2 ?   -3.4   0.0      0.58     1e+04      46      59 ..     173     186 ..     167     189 .. 0.65

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 9.5e-34
     Gp138_N 21 ikkklsdgetvelpllvdvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlhdlsdafaivG 98
                 ++ +++ +++e+p+l dvpvvfprggg+tltfpv++Gdeclvvfs+r+id+w+q+Ggvq  +  r h  sdaf+i+G
  EHT99075.1 12 TSMDRTEYSNNEYPILIDVPVVFPRGGGCTLTFPVQPGDECLVVFSDRCIDFWWQNGGVQPRVVGRNHTFSDAFVIPG 89
                5556666799*******************************************************************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.58
     Gp138_N  46 gggvtltfpvkaGd 59 
                  g vt+  +v+aG 
  EHT99075.1 173 NGPVTVNNDVTAGG 186
                 46667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1546.15
//
Query:       EHT99076.1  [L=147]
Description: hypothetical protein CKS_0987 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1169.63
//
Query:       EHT99077.1  [L=280]
Description: putative exogenous DNA processing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.1e-111  368.9   0.0   1.1e-110  368.7   0.0    1.0  1  RsmJ           Ribosomal RNA large subunit methyltransferase 
       0.01   15.5   0.0       0.21   11.2   0.0    2.4  3  Cons_hypoth95  Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.7   0.0  1.2e-114  1.1e-110       1     243 [.      33     276 ..      33     278 .. 0.99

  Alignments for each domain:
  == domain 1  score: 368.7 bits;  conditional E-value: 1.2e-114
                 SS--EEEESS--SSEEETTSHHHHHHSGGGGTGGGTTT-TT--GGGHHHHHHHHHTTTTSS--EEE-HHHHHHHHS-TT-EEEEE---TTHHHHHHHHT CS
        RsmJ   1 ekpfavlDthaGvGrYdLsseeaektgeaeeGiaRliaqadlpaeleryldvvrklnkgeklryYpGspllarrllReqDrlvlteLhpkdaalLkael 99 
                 ekpf++lDthaG+GrY+Ls+e+ae+tge+ eGi+R+++q+d+pa l++y d++++ln++++lryYpGspl+ar+llR +D+++lteLh +d++lL++e+
  EHT99077.1  33 EKPFLYLDTHAGAGRYQLSGEHAERTGEYLEGIGRIWQQPDAPALLQPYFDAIHALNRNGTLRYYPGSPLIARHLLRPEDKIQLTELHSSDYPLLRTEF 131
                 79************************************************************************************************* PP

                 TT-TTEEEESS-HHHHHHHS-S-TTS-EEEEE----SSCCHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHCTT---EEEEEEESS--- CS
        RsmJ 100 akdkrvrvkkadGfaalkaklppkekRglvliDPPyeakdeydrvvaalrealkRlaqavlaiWyPikdrkqlkaflkaleatvirkiLkielevrPds 198
                 +kd+r+rv++adG+++lkaklpp ++Rgl+liDPPye+k +y++vv++++e++kR+ ++++a+WyP++ r+q+k++l++leat+ir+iL+iel+vrPds
  EHT99077.1 132 SKDSRARVERADGYQQLKAKLPPLSRRGLILIDPPYEMKSDYQAVVKGIQEGHKRFGTGIYALWYPVVLRQQIKHMLRELEATGIRNILQIELAVRPDS 230
                 *************************************************************************************************** PP

                 SSSS--EEEEEEES--TTHHHHHHHHHHHHHHHH-TT.-SEEEEEE CS
        RsmJ 199 derklngsgmvvinpPwtledelkevlpvlkkklaee.tgrirleW 243
                 d+r++++sgm+vinpPw+l d+++++lp+l++kl+++ tg+ +++ 
  EHT99077.1 231 DQRGMTASGMIVINPPWKLADQMNTLLPWLHQKLVPTgTGHFSVNQ 276
                 *************************************999999875 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.44   3.9e+03      40      54 ..      33      47 ..      18      50 .. 0.71
   2 !   11.2   0.0   2.4e-05      0.21      80     138 ..     127     182 ..      80     189 .. 0.77
   3 ?    1.5   0.0     0.023     2e+02      80     138 ..     204     262 ..     199     270 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.44
                   HCC-EEEETT-TTSH CS
  Cons_hypoth95 40 iegarvLDlfaGsGa 54
                    +   +LD +aG G 
     EHT99077.1 33 EKPFLYLDTHAGAGR 47
                   555668999999985 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.4e-05
                    HHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHH CS
  Cons_hypoth95  80 lkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlellee 138
                    l+++ ++     ++++ + d +++l+ +    ++  ++ +DPPy+ +  +++v++ ++e
     EHT99077.1 127 LRTEFSKDS---RARVERADGYQQLKAKLPPLSRRGLILIDPPYEMKSDYQAVVKGIQE 182
                    555444433...567778888888888888888899*********99999*99998875 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.023
                    HHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHH CS
  Cons_hypoth95  80 lkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlellee 138
                    +k+ l+el++++  ++l+ + + + ++  +      ++ ++PP++  ++++++l  l++
     EHT99077.1 204 IKHMLRELEATGIRNILQIELAVRPDSDQRGMTASGMIVINPPWKLADQMNTLLPWLHQ 262
                    5555555555542222222223333333333445689*******999988887776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.32
# Mc/sec: 2636.46
//
Query:       EHT99078.1  [L=271]
Description: putative metal-dependent membrane protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-20   70.8  10.5    9.5e-20   70.8  10.5    2.8  2  CPBP             CPBP intramembrane metalloprotease
  ------ inclusion threshold ------
       0.76    9.9   6.0        3.4    7.8   0.7    2.9  3  DUF2953          Protein of unknown function (DUF2953)
        1.9    8.8   8.5      0.071   13.4   1.1    2.3  3  DUF5413          Family of unknown function (DUF5413)
        8.8    5.8  15.5        1.3    8.5   7.7    2.4  2  5TM-5TMR_LYT     5TMR of 5TMR-LYT


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   6.0       1.3   5.6e+03      39      84 ..      18      79 ..       3     166 .. 0.68
   2 !   70.8  10.5   2.1e-23   9.5e-20       6      91 ..     172     258 ..     167     259 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHCSGGG....HHHHHHHHHHHHHHHHHHHHTT-............HHHHHH CS
        CPBP 39 lailissilFglaHlpn....gpsvllaalaGlvlgylylktgs............llaail 84
                l++l+ +++ +l  + n     +++++aa+a lv   +y +  +            ++ a++
  EHT99078.1 18 LSLLLLALATALGVYQNvldwPVTFVFAAVAALVAFRIYDRRSRrwqivseallvlIALALM 79
                55555556666665555444322344444444444444443332344444444444444444 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 2.1e-23
                 HHHHHHHHHHHHHHHHHHTTCHHHHHHHH.S-.HHHHHHHHHHHHHCSGGGHHH.HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        CPBP   6 lvfllalllapllEEllfRglllqllqergss.tlailissilFglaHlpngps.vllaalaGlvlgylylktgsllaaillHallnl 91 
                  ++l++l+++ l+EE++fRg+l+q+l+++ +  ++a+l++++lFglaH+  g+  +++aalaGl++g+++  +g+l+ a ++H++ln+
  EHT99078.1 172 SFALANLFFVSLAEEAFFRGYLQQRLRQK-WGgVIALLVTALLFGLAHASGGVLlMIFAALAGLIYGLVWHWSGRLWLATAFHFALNM 258
                 578999***********************.666*******************999*******************************97 PP

>> DUF2953  Protein of unknown function (DUF2953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   6.3e+03      41      49 ..      81      89 ..      79      90 .. 0.80
   2 ?    3.7   0.4     0.015        68      10      28 ..     209     227 ..     208     228 .. 0.87
   3 ?    7.8   0.7   0.00077       3.4       8      27 ..     229     248 ..     229     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
     DUF2953 41 evtPvFnee 49
                + +P Fn++
  EHT99078.1 81 HLIPGFNNP 89
                678999997 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
     DUF2953  10 dTgilyGliwaikgllygl 28 
                 +T++l+Gl++a  g l+++
  EHT99078.1 209 VTALLFGLAHASGGVLLMI 227
                 7**********99988765 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00077
     DUF2953   8 aadTgilyGliwaikgllyg 27 
                 aa+ g++yGl+w + g l+ 
  EHT99078.1 229 AALAGLIYGLVWHWSGRLWL 248
                 89**********99997764 PP

>> DUF5413  Family of unknown function (DUF5413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.63   2.8e+03     100     127 ..      25      52 ..       3      58 .. 0.61
   2 ?   -1.9   0.1      0.86   3.8e+03      43      61 ..      96     114 ..      69     127 .. 0.66
   3 ?   13.4   1.1   1.6e-05     0.071      78     126 ..     195     243 ..     173     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.63
     DUF5413 100 rgadsgvvqfvlyglvglvpavlsswla 127
                   +  gv q vl   v +v a +++ +a
  EHT99078.1  25 LATALGVYQNVLDWPVTFVFAAVAALVA 52 
                 4455667777777777777666666555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.86
     DUF5413  43 kvlfktlqysylfgllpal 61 
                 kv + ++++s+ f +  al
  EHT99078.1  96 KVGARSVPFSFSFNFDKAL 114
                 5556677777666553332 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.6e-05
     DUF5413  78 pvlrlllvglvafvatallygsrgadsgvvqfvlyglvglvpavlsswl 126
                   lr   +g++a+++tall+g   a  gv+ +++  l gl+  ++  w 
  EHT99078.1 195 QRLRQKWGGVIALLVTALLFGLAHASGGVLLMIFAALAGLIYGLVWHWS 243
                 56888899*********************************99998885 PP

>> 5TM-5TMR_LYT  5TMR of 5TMR-LYT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.9     0.031   1.4e+02      73     123 ..      25      76 ..       1     104 [. 0.50
   2 ?    8.5   7.7    0.0003       1.3      67     133 ..     203     264 ..     200     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.031
  5TM-5TMR_LYT  73 hRyllgGftalacgistilagllaGlihrklkrrr.kkltvlvalligllve 123
                   +  +lg  + +  + +t + +++a+l+  ++  rr ++++++  +l+ l++ 
    EHT99078.1  25 LATALGVYQNVLDWPVTFVFAAVAALVAFRIYDRRsRRWQIVSEALLVLIAL 76 
                   4444444555555555555555555554444333333333333333333322 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0003
  5TM-5TMR_LYT  67 gliaglhRyllgGftalacgistilagllaGlihrklkrrrkkltvlvalligllveilqmllilll 133
                   g+ia+l+  ll+G +  + g+  ++ ++laGli+  + +  ++ +++ a ++ ++++++++l+   +
    EHT99078.1 203 GVIALLVTALLFGLAHASGGVLLMIFAALAGLIYGLVWH--WSGRLWLATAFHFALNMVHLLF---F 264
                   7899999999***99999***************999998..9999**9999999988666554...4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.34
# Mc/sec: 2382.97
//
Query:       EHT99079.1  [L=303]
Description: RNase BN [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-21   75.4   0.0    1.3e-11   44.4   0.0    2.1  2  Lactamase_B_2  Beta-lactamase superfamily domain
    3.5e-11   43.5   0.1    7.5e-11   42.4   0.1    1.8  1  Lactamase_B    Metallo-beta-lactamase superfamily
    3.1e-05   23.6   0.0    6.3e-05   22.6   0.0    1.5  1  Lactamase_B_4  tRNase Z endonuclease


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   2.2e-15   1.3e-11       4     134 ..      34     152 ..      32     157 .. 0.81
   2 !   29.1   0.0   1.1e-10   6.5e-07     131     201 .]     201     269 ..     176     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.2e-15
                    EES--TTHHHH.HTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC.....C--EE...EEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE CS
  Lactamase_B_2   4 LiDagpdlrqq.alralqPvelrdelppidaVllthaHyDHlaglltlre.....lrpkk...lplyapkgvlavleanfvylaleeepavnvhel 90 
                    L+D+g ++  q +++ l+       + ++d +++th H DH+ gl+ l +     +       +++y+p+g+ a +e+ ++   +  + +++++e+
     EHT99079.1  34 LFDCGEGTQLQfMRSDLK-------PGKLDKIFITHLHGDHIFGLPGLLTsrsmaG---LttpMTVYGPAGLKAFVETALSLSSSYTDYPLEIVEI 119
                    89*****87774444443.......459**************99999988554442...045599****************999999999****** PP

                    -TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTT CS
  Lactamase_B_2  91 dwgesfelgdggleitatparhksgrrldrnagdtlGlrieggg 134
                    ++ge ++ g  ++++ta p +h+ +          +G+rie+++
     EHT99079.1 120 AAGEVLDDG--EFRVTAWPMNHTIAC---------FGYRIEQHD 152
                    ****99998..578999988888775.........999999554 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 1.1e-10
                    ECTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHH.HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 131 egggkrvyyigDtgyipeeigerlggadllllditayeddemir.hmgHltpeeaveaaadlgakrlvliHi 201
                    +  gk+++  gDt+ ++ +  ++ +g+d+++++ t+ e    ++ + gH+t  +a+ +a+++gakrl+ +H+
     EHT99079.1 201 K--GKTLAIFGDTAPTDVA-LQLAAGVDVMVHETTLEEALAEKAnGRGHSTTLQAATVAKQAGAKRLIATHF 269
                    4..899********98855.56***********998887765559**************************7 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.1   1.3e-14   7.5e-11       6     129 ..      17     136 ..      13     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.3e-14
                  SEEEEEE....ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTT CS
  Lactamase_B   6 vnsylie....gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgllla 99 
                   n++ i       g + L+D+G +t+ + ++      +lkp ++d +++THlH DHi+gl+gl   +  +    + + + + +  a  ++    +   
   EHT99079.1  17 RNVTAIAftrdKSGATWLFDCGEGTQLQFMR-----SDLKPGKLDKIFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPAGLKAFVETALSLS--- 106
                  56666666663346666*************9.....6***************************9999999888888777777777666666553... PP

                  CHCGCCEEEEETTTEECCCTEEEEEHECTT CS
  Lactamase_B 100 gvsadkpdvdeeeldgnaggrralyvtggp 129
                    + d p +  e+ +g++++++++ vt  p
   EHT99079.1 107 SSYTDYPLEIVEIAAGEVLDDGEFRVTAWP 136
                  444444444444444444444444444444 PP

>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08   6.3e-05      22      60 ..      31      67 ..      12      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.1e-08
  Lactamase_B_4 22 krYlfGkvgEgtQRavneqkvrlsklesiFLtgkvswss 60
                     +lf ++gEgtQ  ++ + ++ +kl++iF+t+ +  ++
     EHT99079.1 31 ATWLF-DCGEGTQLQFMRSDLKPGKLDKIFITHLH-GDH 67
                   6789*.***************************98.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2621.09
//
Query:       EHT99080.1  [L=450]
Description: glutathione oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-70  237.9   1.6    2.2e-70  237.2   1.6    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-37  128.0   1.3      5e-36  123.3   0.4    3.0  3  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    7.7e-17   61.6   0.0    2.3e-16   60.1   0.0    1.8  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.3e-15   57.5   0.0    1.3e-15   57.5   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00044   19.1   0.8        1.3    7.6   0.0    3.1  3  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.013   14.6   0.2       0.05   12.7   0.0    2.0  2  GIDA           Glucose inhibited division protein A
      0.046   13.1   0.1       0.19   11.0   0.1    1.9  2  FAD_oxidored   FAD dependent oxidoreductase
       0.17   11.0   0.0       0.25   10.4   0.0    1.3  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
        1.5    7.8   6.4        7.8    5.5   0.1    2.7  3  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.2   1.6   1.1e-73   2.2e-70       2     294 .]       6     318 ..       5     318 .. 0.98

  Alignments for each domain:
  == domain 1  score: 237.2 bits;  conditional E-value: 1.1e-73
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........................evvkklnqgielll 71 
                  d++ iGgG +G+a   ++a +g   +l+e   l+gtc+n+gc+++k+++++a+ ae ++                           ++++ q+++++l
   EHT99080.1   6 DYLAIGGGSGGIASINRAASYGQTCALIEakaLGGTCVNVGCVPKKVMWHAAQIAEAIHlygpdygfdttvnrfdwatlvknrsAYIDRIHQSYDNVL 103
                  6778******************************************************9*************************99************ PP

                  CCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevt 169
                  g+++v++++g +++ + +++e ++e+i++d++++AtG++p  ++ipG+ e++      +ds+  ++l+ lpkr++vvG+Gyi+vElA++ + lg+e++
   EHT99080.1 104 GKNKVDVIHGFARFIDAHTVEVNGETITADHILIATGGRPSHPDIPGA-EYG------IDSDGFFELDALPKRTAVVGAGYIAVELAGVVNALGSETH 194
                  ************************************************.666......89************************************** PP

                  EEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 170 lveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdeflr 265
                  l  +   +lr++d+ ++++l e++++eG ++++++++k++ +n + +l+++ledg+e+ +d++v+a+G+ p+t++l+ +++g++lde+g+i+vd+f++
   EHT99080.1 195 LFVRKHAPLRNFDPLITDTLVEVMNAEGPTLHTQATPKAVVKNADgSLTLQLEDGSEYTVDCLVWAIGRVPETDGLNiQAAGVALDEKGYIKVDKFQN 292
                  *********************************************9999************************************************* PP

                  ESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 266 tnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  tnvpg+ya+GD +   g +el+++Av++G
   EHT99080.1 293 TNVPGVYAVGDNT---GAVELTPVAVAAG 318
                  ***********99...*********9987 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.66   1.3e+03      41      77 ..     151     187 ..     103     192 .. 0.81
   2 ?    1.3   0.0       0.2     4e+02      41      84 ..     275     318 ..     261     331 .. 0.72
   3 !  123.3   0.4   2.5e-39     5e-36       1     109 [.     339     449 ..     339     450 .] 0.99

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.66
                    HCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHH CS
  Pyr_redox_dim  41 alayaetkgfvKlvadaktgkvlGahivGpgageliq 77 
                    a +  +++gf+ l a  k   v+Ga  ++ + + +++
     EHT99080.1 151 AEYGIDSDGFFELDALPKRTAVVGAGYIAVELAGVVN 187
                    5566678899999899999999999998877766665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.2
                    HCHTTHTEEEEEEEEET.TTTBEEEEEEECTTHHH.HHHHHHHHHH CS
  Pyr_redox_dim  41 alayaetkgfvKlvada.ktgkvlGahivGpgage.liqelavaik 84 
                    a +  ++kg++K+  d+ ++  v G+  vG++ g   +  +ava  
     EHT99080.1 275 AGVALDEKGYIKV--DKfQNTNVPGVYAVGDNTGAvELTPVAVAAG 318
                    5555668999998..7779999999999999877644555555555 PP

  == domain 3  score: 123.3 bits;  conditional E-value: 2.5e-39
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHT CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedlad 94 
                    iptvvf++p++++vGlte +A++++++  +kv+k+ f+a++ a++++++ + +Klv+   ++k++G+h +G g++e++q++ava+k+g+t++d+++
     EHT99080.1 339 IPTVVFSHPPIGTVGLTEPQAREQYGDdqVKVYKSAFTAMYTAVTQHRQPCRMKLVCVGPEEKIVGIHGIGSGMDEMLQGFAVALKMGATKKDFDN 434
                    7*********************************************************************************************** PP

                    SBSSSSSTGGGGHCH CS
  Pyr_redox_dim  95 tihihPtlsealkea 109
                    t++ihPt +e+++++
     EHT99080.1 435 TVAIHPTAAEEFVTM 449
                    ************997 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.2e-19   2.3e-16       1      80 [.     169     248 ..     169     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.2e-19
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesvklkd 80 
                 + +vvG+Gyi++ElAg+ ++lg+++++++r+  +lr++D+ + + l e + ++g +++++++++++++++dg ++ ++l+d
  EHT99080.1 169 RTAVVGAGYIAVELAGVVNALGSETHLFVRKHAPLRNFDPLITDTLVEVMNAEGPTLHTQATPKAVVKNADGsLT-LQLED 248
                 579********************************************************************9555.66655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.2       0.4     8e+02       3      34 ..      10      40 ..       8      45 .. 0.86
   2 !   57.5   0.0   6.5e-19   1.3e-15     112     305 .]     119     302 ..      84     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
  Pyr_redox_3  3 iGaGPaGlaaaielkkagledylilEkgnign 34
                 iG+G  G+a+   +   g  +   +E +++g 
   EHT99080.1 10 IGGGSGGIASINRAASYGQ-TCALIEAKALGG 40
                 9*********999999998.689999998875 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 6.5e-19
  Pyr_redox_3 112 egfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsys 209
                  +  +ve + et++A++++iAtG   +P  ++ipG+e + + +  + e+ +   ++ +V+G++  av+ A  + + g+e ++++r++        p   
   EHT99080.1 119 DAHTVEVNGETITADHILIATGG--RPSHPDIPGAE-YGIDSDGFFEL-DALPKRTAVVGAGYIAVELAGVVNALGSETHLFVRKH-------APLRN 205
                  6789******************8..**********9.***********.6778999****************************97.......47788 PP

  Pyr_redox_3 210 lkpdienrleelvkeekikvlfnaevkei.kekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglfla 304
                    p i + l e+++ e  +++++a+ k++ k+ + + +++ edg++ +v d  v a+G  p+++ l+   ++++lde+g++++++  + tnvpg++ +
   EHT99080.1 206 FDPLITDTLVEVMNAEGPTLHTQATPKAVvKNADGSLTLQLEDGSEYTV-DCLVWAIGRVPETDGLNIqaAGVALDEKGYIKVDK-FQNTNVPGVYAV 301
                  99***********997789999988887516778999*********999.667*********998654459************97.578*******99 PP

  Pyr_redox_3 305 G 305
                  G
   EHT99080.1 302 G 302
                  8 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5     0.024        48       2      33 ..       6      37 ..       5      45 .. 0.88
   2 !    5.5   0.0    0.0028       5.6     143     170 ..     121     148 ..     104     175 .. 0.80
   3 !    7.6   0.0   0.00066       1.3     111     163 ..     210     262 ..     191     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.024
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d + iGgG  G+    +aa+ g+  +l+e++ 
   EHT99080.1  6 DYLAIGGGSGGIASINRAASYGQTCALIEAKA 37
                 5677**********9**************874 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0028
                  EEEEE.TTEEEEESEEEE----S.S-GGG CS
  HI0933_like 143 frvktkseeeleadklvlAtGGl.SiPkl 170
                  ++v++ ++e+++ad++++AtGG  S P +
   EHT99080.1 121 HTVEV-NGETITADHILIATGGRpSHPDI 148
                  67888.9***************6477766 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00066
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  i d+l++ ++++g +l+++ + k+v k++dg++++++++++e++ d lv A+G
   EHT99080.1 210 ITDTLVEVMNAEGPTLHTQATPKAVVKNADGSLTLQLEDGSEYTVDCLVWAIG 262
                  7799***********************************************99 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.5e-05      0.05       5     150 ..      10     141 ..       6     153 .. 0.83
   2 ?   -1.4   0.0      0.48   9.5e+02       3      31 ..     171     199 ..     169     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
                 E-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHHHH CS
        GIDA   5 iGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelyskev 101
                 iGgG  G++    aa  G   +Li      +t+++++C p      ++++ + i   g   +  +  ++    +l       v++  a +dr   ++++
  EHT99080.1  10 IGGGSGGIASINRAASYGQTCALIeaKALGGTCVNVGCVPKKVMWHAAQIAEAIHLYGPDYGFDTTVNRFDWATL-------VKNRSAYIDRI--HQSY 99 
                 9***********************7666789***********************999999998888888755555.......55555566664..4556 PP

                 HHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 102 teklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                  ++l + +++++i++ +  ++         v  +geti+a+++ iatG 
  EHT99080.1 100 DNVLGK-NKVDVIHGFARFIDA------HTVEVNGETITADHILIATGG 141
                 666655.99******9999977......667789999*********996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.48
                 EEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithk 31 
                  V+G+G   +e A  +  lG ++ L++ k
  EHT99080.1 171 AVVGAGYIAVELAGVVNALGSETHLFVRK 199
                 69**********************99655 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.6e-05      0.19       4      54 ..       9      58 ..       6     114 .. 0.88
   2 ?   -0.8   0.0      0.36   7.2e+02      80     127 ..     201     248 ..     174     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.6e-05
  FAD_oxidored  4 VvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeq 54
                   +GGg++G+a    Aa  G++ +L+e  + lGG+  + +  +   +++++q
    EHT99080.1  9 AIGGGSGGIASINRAASYGQTCALIEA-KALGGTCVNVGCVPKKVMWHAAQ 58
                  69***********************97.579**999988777666665554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
  FAD_oxidored  80 kw.ntfepevakavleemlaeagvtvllntrlvevekegkriesvtves 127
                   ++ + f+p +  +++e m ae g t+ +++++++v+k+ +    +++e+
    EHT99080.1 201 APlRNFDPLITDTLVEVMNAE-GPTLHTQATPKAVVKNADGSLTLQLED 248
                   223369999999999999988.**************9855555555543 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00013      0.25     140     210 ..     123     186 ..      91     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
  K_oxygenase 140 aegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedl 210
                   e + e+++a ++++++G++p+ P++  +    e  + s+ + e     + +kr aVvG+G  a e++  +
   EHT99080.1 123 VEVNGETITADHILIATGGRPSHPDIPGA----EYGIDSDGFFELD---ALPKRTAVVGAGYIAVELAGVV 186
                  3446789*****************98775....4568888888775...789999*******999986544 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   2.2     0.022        45       1      32 [.       6      37 ..       6      45 .. 0.89
   2 ?   -1.1   0.0      0.37   7.5e+02     188     204 ..     128     144 ..      78     185 .. 0.84
   3 ?    5.5   0.1    0.0039       7.8     372     402 ..     273     305 ..     263     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.022
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   D + iG+G +G a+  +aa  G+++a++e + 
     EHT99080.1  6 DYLAIGGGSGGIASINRAASYGQTCALIEAKA 37
                   6789************************9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.37
                    EEEEESEEEE-----GG CS
  FAD_binding_2 188 vrirakavvlatgGfgr 204
                    ++i+a+++++atgG + 
     EHT99080.1 128 ETITADHILIATGGRPS 144
                    37889999999999885 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0039
                    ES-EEEBETTSBE..STTEEESSBTEEE-STCE CS
  FAD_binding_2 372 tmgGvetdengrv..ldadgqpipGLYAaGeva 402
                    +++Gv+ de+g    ++ +++++pG YA+G  +
     EHT99080.1 273 QAAGVALDEKGYIkvDKFQNTNVPGVYAVGDNT 305
                    678999999997665999************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3618.34
//
Query:       EHT99081.1  [L=376]
Description: ROK family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-22   78.2   0.0    1.7e-17   63.8   0.0    2.1  2  ROK       ROK family
    8.8e-05   22.2   0.1    0.00023   20.9   0.1    1.7  1  HTH_IclR  IclR helix-turn-helix domain
    0.00027   20.4   0.4    0.00048   19.6   0.4    1.4  1  HTH_24    Winged helix-turn-helix DNA-binding
     0.0008   19.3   0.1     0.0013   18.6   0.1    1.4  1  MarR      MarR family
      0.004   17.0   0.1     0.0074   16.1   0.1    1.5  1  MarR_2    MarR family
     0.0049   17.3   0.0     0.0085   16.6   0.0    1.3  1  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   5.8e-21   1.7e-17       7     155 ..      91     243 ..      85     254 .. 0.79
   2 !   12.5   0.0   2.4e-05     0.073     197     289 ..     275     367 ..     262     371 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 5.8e-21
                 -SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHC...CHTEEEEEEEEESSEEETTCCEBSSGGC..GCCCCTTHHHHHHHHHTS-E CS
         ROK   7 Ggtkialalvdeegeilarekvetptetteetlvdaiaelvdeaer...kadeliavgigspGlisdksgkivstpn..itwenfdlvekleerlnvpv 100
                   + +a+ l++  g i +   ++t   +++ tl d   + +d +++   + +++++vg  ++G++  +s+k  ++p+   +w  +dl  ++ + +++pv
  EHT99081.1  91 NSDSVAASLINFRGDIIEYCVLDTLPGNPARTLLDLKRHYLDTLKHigiSSEKVCGVGYSMAGFL-YDSRKYFNPPEplKNWMGIDLRREIMTLFDRPV 188
                 5555556666666666655555555555555555555555554443222567899**********.8888888998866799***************** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-G CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagel 155
                  +en++  aa aEa++ga   +e++ y++   G+G+G++ingk+++G++G+age+
  EHT99081.1 189 WIENNATTAAHAEAFLGAGLHYETFGYLSFNYGFGGGIVINGKPFQGAFGNAGEI 243
                 ******************************************************8 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTS.TTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHH CS
         ROK 197 akeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvsea.dkll.eairklvkkylnkklevpvveivaaklgdkagllGaaa 289
                 ++++ +++    + a + v++++ +l +a+  l +++dp ai+lgG++     +++ ++ r +  k+ n  +e p+  i+ +  + ++++lGaa+
  EHT99081.1 275 IRDLNNKFDPDWPIARQWVNEVTPNLHRAMDALNAVIDPGAIILGGELPRKlGEMFlAMPRVSSGKRWNISAEYPD--ILLSTIEGDSSALGAAL 367
                 56777778888899**********************************7542667634444444455555555555..88888888888999885 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.8e-08   0.00023       8      49 ..      20      60 ..      19      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.8e-08
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                iL+++++  +  + s l  +t l+ S+vhR++ tL+e G++ 
  EHT99081.1 20 ILELVRRNHG-ISRSSLVSQTILNQSSVHRIVDTLTENGFLS 60
                6666666666.7889999**********************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.4   1.6e-07   0.00048       1      46 [.      13      58 ..      13      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.6e-07
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGl 46
                l++ ++ ILel+++n +is + L  ++ l +s v+r ++ L+e+G+
  EHT99081.1 13 LNRSEKLILELVRRNHGISRSSLVSQTILNQSSVHRIVDTLTENGF 58
                68999****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   4.5e-07    0.0013       1      54 [.      13      66 ..      13      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.5e-07
                --HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETT CS
        MarR  1 ltltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspe 54
                l++++ +iL++++++ ++s s L ++  +++s+v r++d+L ++G+++   sp+
  EHT99081.1 13 LNRSEKLILELVRRNHGISRSSLVSQTILNQSSVHRIVDTLTENGFLSLGESPS 66
                7889999***************************************98666666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.5e-06    0.0074       3      62 .]      13      70 ..      11      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                l++++  +L  ++r+ g  ++ + l+  + l +s+v+ri++ L + G++   ++p  +R+
  EHT99081.1 13 LNRSEKLILELVRRNHG--ISRSSLVSQTILNQSSVHRIVDTLTENGFLSLGESPSQGRG 70
                56788899999*****9..******************************99999999996 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-06    0.0085       1      58 [.      13      69 ..      13      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-06
      HTH_27  1 ltrqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrr 58
                l+r++ l+L+l+r r+++ + + l+  + +++s+++ +++ Lte+G++   +++  +r
  EHT99081.1 13 LNRSEKLILELVR-RNHGISRSSLVSQTILNQSSVHRIVDTLTENGFLSLGESPSQGR 69
                689999*******.7777777999999*********************5555554455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2707.39
//
Query:       EHT99082.1  [L=360]
Description: putative ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-33  116.2   0.0    2.2e-33  115.7   0.0    1.2  1  ABC_tran     ABC transporter
    5.1e-08   33.1   0.0     0.0032   17.3   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.8e-05   23.2   0.1    0.00026   20.5   0.1    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00024   21.1   0.0    0.00034   20.6   0.0    1.2  1  Rad17        Rad17 P-loop domain
    0.00092   19.6   0.3     0.0093   16.4   0.3    2.2  1  AAA          ATPase family associated with various cellular a
     0.0034   17.8   0.5     0.0056   17.1   0.5    1.4  1  AAA_16       AAA ATPase domain
     0.0041   17.1   0.0     0.0075   16.2   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.012   15.7   0.1       0.16   12.2   0.0    2.6  2  TOBE_2       TOBE domain
      0.017   15.1   0.0      0.025   14.5   0.0    1.3  1  ATPase_2     ATPase domain predominantly from Archaea
      0.029   14.4   0.0      0.089   12.8   0.0    1.7  1  AAA_5        AAA domain (dynein-related subfamily)
      0.034   14.4   0.3       0.06   13.6   0.3    1.6  1  AAA_22       AAA domain
      0.036   13.3   0.0      0.049   12.8   0.0    1.3  1  NB-ARC       NB-ARC domain
      0.038   14.1   0.0      0.081   13.0   0.0    1.5  1  PapA_C       Phthiocerol/phthiodiolone dimycocerosyl transfer
      0.043   14.0   1.0       0.31   11.2   1.0    2.2  1  AAA_33       AAA domain
      0.047   13.4   0.0      0.098   12.4   0.0    1.5  1  AAA_30       AAA domain
       0.06   13.3   0.1       0.14   12.0   0.1    1.6  1  NACHT        NACHT domain
      0.077   12.6   0.0       0.26   10.8   0.0    1.8  2  AAA_25       AAA domain
        0.1   12.4   0.1       0.22   11.3   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
       0.12   12.1   0.0       0.26   11.0   0.0    1.6  1  RuvB_N       Holliday junction DNA helicase RuvB P-loop domai
       0.14   11.8   0.0       0.22   11.2   0.0    1.2  1  AAA_15       AAA ATPase domain
       0.19   11.5   0.1       0.51   10.1   0.0    1.7  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.21   11.8   0.8       0.56   10.4   0.4    2.0  2  AAA_28       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   2.7e-36   2.2e-33       1     136 [.      19     161 ..      19     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 2.7e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ +slk ++g+ v ++G++G+GK+tLlk++ag ++ ++Ge+l+ ++d+++   +  ++  ++++q   lfp+l+v+en             e++++++
  EHT99082.1  19 LDGISLKAEKGQFVSLLGPSGCGKTTLLKVIAGFYSLDSGEVLIHQQDMHQ--VKPEHRDTAMCFQSYALFPHLSVAENigfglkqrkmakaERQDRVT 115
                 789***********************************************9..99999*****************************996555555566 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + +s+++l+        + p++LSgGq+qrvalaral+ +p+++l+DEp 
  EHT99082.1 116 QTASQVSLNAHLP----KLPAQLSGGQQQRVALARALAVRPEIVLFDEPL 161
                 6666666655443....556*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.5e-05     0.045       3      25 ..      33      55 ..      31      77 .. 0.79
   2 !   17.3   0.0   3.9e-06    0.0032     235     298 ..     132     193 ..     102     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.5e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                 l Gp g+GK++LL+ + ++ +l
  EHT99082.1 33 SLLGPSGCGKTTLLKVIAGFYSL 55
                699**************998765 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3.9e-06
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++lS G+++  al+ al+ ++    ++l+DEp ++L+  l  r+   +++l+r +g   i +TH+
  EHT99082.1 132 AQLSGGQQQRVALARALAVRP---EIVLFDEPLSNLDATLRDRVRLEIRQLQRsHGFTAIYVTHD 193
                 68999999999*******999...9**************************999**********8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.1e-07   0.00026      24     211 ..      29     206 ..      10     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.1e-07
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEE...SSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkk...lkiekeevsisrrvkrkgeseykingkev 118
                  +f +++Gp G+GK+ ll  i    G+ s      ++ + lih+   ++ + ++ + ++ f+        ++ e+  + +++r++ k e + ++  +++
  EHT99082.1  29 GQFVSLLGPSGCGKTTLLKVIA---GFYSL-----DSGEVLIHQqDMHQVKPEHRDTAMCFQSYALFphlSVAENIGFGLKQRKMAKAERQDRV-TQTA 118
                 47999**************994...54333.....55577888843344455566666666555544221333344455555555555533333.2333 PP

                 -HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgv 211
                 ++  ++  l++    + +LSgG+++ vala  +A++   p  ++l+De  ++LD++ + +v   +++ + +  +  i +++++     ++ +v v
  EHT99082.1 119 SQVSLNAHLPK---LPAQLSGGQQQRVALARALAVR---P-EIVLFDEPLSNLDATLRDRVRLEIRQLQRShgFTAIYVTHDRAEALSMSDVVVV 206
                 34444444444...4679************999975...4.489**********************77666225667777766655555555544 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.1e-07   0.00034      34      76 ..      18      60 ..      15     150 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.1e-07
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrew 76
                +l+  +L+ +k + + + GPsGCgk+t +kv++  ++ +  e 
  EHT99082.1 18 ALDGISLKAEKGQFVSLLGPSGCGKTTLLKVIAGFYSLDSGEV 60
                578889999999*******************998777665554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   1.1e-05    0.0093       2      25 ..      33      56 ..      32     216 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
                EEESSTTSSHHHHHHHHHHHHTHE CS
         AAA  2 llyGppGtGKTllakavakelgve 25
                 l Gp G+GKT+l k +a   + +
  EHT99082.1 33 SLLGPSGCGKTTLLKVIAGFYSLD 56
                589***************976433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.5   6.9e-06    0.0056      23      67 ..      28      77 ..      18     198 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.9e-06
      AAA_16 23 rpelvllsGesGvGKsslvrellralekd..ggiflrgkcdql...esai 67
                 ++ v l G+sG+GK++l++ ++  ++ d  +++  +++ +q    ++++
  EHT99082.1 28 KGQFVSLLGPSGCGKTTLLKVIAGFYSLDsgEVLIHQQDMHQVkpeHRDT 77
                447899*************9999766666222444444444444333332 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.2e-06    0.0075      98     130 ..      28      60 ..       4      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.2e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgev 130
                  k++++ l+G+SG GK+tL++++++  +l  gev
   EHT99082.1  28 KGQFVSLLGPSGCGKTTLLKVIAGFYSLDSGEV 60 
                  459999****************99888877776 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.1   8.7e+02       1      26 [.     148     171 ..     148     175 .. 0.71
   2 ?   12.2   0.0   0.00019      0.16       4      76 .]     281     355 ..     280     355 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
      TOBE_2   1 laiRPEklrlaaagganglsGtVedv 26 
                 la+RPE +    +++   l +t +d+
  EHT99082.1 148 LAVRPEIVLF--DEPLSNLDATLRDR 171
                 79****9988..45445777777666 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00019
      TOBE_2   4 RPEklrla.aagganglsGtVedveylGsstryvvelaggqlvvvrqpnadr.dsalapGdtVelswdpddavvl 76 
                 RPE+  l+ +++g n+ + ++  v++lG+ ++++v   + ++ + + + +   ++++++Gd V  s+ pd++++l
  EHT99082.1 281 RPEDALLSeQETGMNTRAFEIGAVSFLGNLSELQVHPKDHEEPEYQWHIQLVgKNHIREGDSVNFSIAPDRIRFL 355
                 9******955555789999********************9999987777766668***************99876 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.1e-05     0.025      16      63 ..      25      73 ..      17     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-05
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkeiienl.edkdkyviyyialreesis 63
                + e+ +++ + Gp g+GKt+Llk i+    +d+++  i   ++++++ +
  EHT99082.1 25 KAEKGQFVSLLGPSGCGKTTLLKVIAGFYsLDSGEVLIHQQDMHQVKPE 73
                45667888899************99876545666666666666666555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.089       4      34 ..      34      64 ..      32      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                EE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5  4 LvGppGtgKselaerlaaalnreveyvqltr 34
                L+Gp+G+gK++l + +a ++     +v++++
  EHT99082.1 34 LLGPSGCGKTTLLKVIAGFYSLDSGEVLIHQ 64
                9***************999966555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   7.4e-05      0.06       4      28 ..      28      52 ..      25     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleq 28
                + +++ + G+sG+GKTtll+ ++  
  EHT99082.1 28 KGQFVSLLGPSGCGKTTLLKVIAGF 52
                678999*************977655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     6e-05     0.049      18      40 ..      29      49 ..      19     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6e-05
                SCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC 18 lqslvvalvGmgGvGKttlakqi 40
                    +v+l G  G+GKttl+k i
  EHT99082.1 29 G--QFVSLLGPSGCGKTTLLKVI 49
                3..49**************9977 PP

>> PapA_C  Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001     0.081      37     103 ..     198     269 ..     162     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
                 SSS--.EEEE-S---TT----TTEEEEEEE.............EEEEEBSS---EEEEEEEETTEEEEEEEC CS
      PapA_C  37 pglPp.vvitNlGvipalrlPegLevedfrsviaselga....aapapaasrevviylvstfngrLsIellh 103
                  ++ + vv++N G+i++  +Pe++    +  ++a  +g+    +a +  + +  ++y vs + g ++I  ++
  EHT99082.1 198 LSMSDvVVVMNAGRIEQTGTPEDIYYSPVNRFVAGFVGQanvmKAHVIDGDSHTGMYRVSCVLGEMNIHSPV 269
                 233347*******************999998888877778999899999999999********999998665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   0.00038      0.31       4     118 ..      34     171 ..      31     199 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00038
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdt.....................................lrrrlfgtdqqsktdytrvldrlyqilne 61 
                 l G++G+GK+tl++ ++         vl+ + +                                                                  
  EHT99082.1  34 LLGPSGCGKTTLLKVIAGFYSldsgEVLIHQQDmhqvkpehrdtamcfqsyalfphlsvaenigfglkqrK---------------------------- 104
                 78************986322233424444444444444444444444444444444444444444422110............................ PP

      AAA_33  62 larkalsagrnvildatnls..........rrer......arflklarrlgvpvrivvvetdeetlkeRlakR 118
                     +++a+r+  + +t  +          +         ++ ++lar l v+ +iv ++ + + l + l+ R
  EHT99082.1 105 ----MAKAERQDRVTQTASQvslnahlpklP--AqlsggqQQRVALARALAVRPEIVLFDEPLSNLDATLRDR 171
                 ....122222222223322211111122221..0112222333444444444444444444433333333333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012     0.098      17      49 ..      28      60 ..      22      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrv 49
                + +++ l Gp G GKtt+lk+++  +  + g+v
  EHT99082.1 28 KGQFVSLLGPSGCGKTTLLKVIAGFYSLDSGEV 60
                45688999**************99988775555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00017      0.14       3      21 ..      32      50 ..      30      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                v l G++G+GKTtLl+ +a
  EHT99082.1 32 VSLLGPSGCGKTTLLKVIA 50
                6799***********9886 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00032      0.26      32      58 ..      28      54 ..      24      80 .. 0.81
   2 ?   -1.8   0.0       2.3   1.9e+03     166     188 ..     170     192 ..     156     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
      AAA_25 32 agelallaGapgtGKttlaldlalava 58
                +g ++ l G++g+GKttl+  +a  ++
  EHT99082.1 28 KGQFVSLLGPSGCGKTTLLKVIAGFYS 54
                79999*************988887766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 +++   +++++r +g + + v H
  EHT99082.1 170 DRVRLEIRQLQRSHGFTAIYVTH 192
                 56666789999999999999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00027      0.22      19      39 ..      26      46 ..      16      50 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_29 19 idlkg.atlltGpsGsGKSTll 39
                 + kg ++ l GpsG GK+Tll
  EHT99082.1 26 AE-KGqFVSLLGPSGCGKTTLL 46
                44.455899************8 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00032      0.26      27      55 ..      23      51 ..      11      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
      RuvB_N 27 kkreealdhvllyGpPGlGkttlakiiak 55
                  + e+   v l Gp G Gkttl k+ia 
  EHT99082.1 23 SLKAEKGQFVSLLGPSGCGKTTLLKVIAG 51
                55677778999****************95 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.22      24      70 ..      27      72 ..      15     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_15 24 e...ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifen 70
                e   +  l G+ ++GK+++l+++  F + +    + ++ i ++d+++ + 
  EHT99082.1 27 EkgqFVSLLGPSGCGKTTLLKVIAGFYSLD----SGEVLIHQQDMHQVKP 72
                334688899*******************88....7889999999988754 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00063      0.51       4      23 ..      32      51 ..      30      65 .. 0.88
   2 ?   -2.6   0.0         5   4.1e+03      65     102 ..     202     240 ..     195     245 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00063
   PduV-EutP  4 illiGkvgsGKttLtqalkg 23
                + l+G++g+GKttL + + g
  EHT99082.1 32 VSLLGPSGCGKTTLLKVIAG 51
                5699**********999876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5
   PduV-EutP  65 dvialvqdateeesvfp.pgfasvfnkeviGiitkidla 102
                 dv++++ +   e++  p + + s +n+ v G + +++++
  EHT99082.1 202 DVVVVMNAGRIEQTGTPeDIYYSPVNRFVAGFVGQANVM 240
                 555444444333333331446788899999988888876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00068      0.56       2      20 ..      32      50 ..      31     124 .. 0.71
   2 ?   -1.3   0.0       2.8   2.3e+03      97     143 ..      72     117 ..      59     141 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00068
      AAA_28  2 ivitGgestGKTtlleaLa 20
                + ++G++++GKTtll+ +a
  EHT99082.1 32 VSLLGPSGCGKTTLLKVIA 50
                6689***********9887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.8
      AAA_28  97 eaeleaaarekrydlvfllppapeidddgeRredleereaiderlre 143
                 +++ + a++++ y+l+ +l +a+ i   g  + +++++e+ d++++ 
  EHT99082.1  72 PEHRDTAMCFQSYALFPHLSVAENI-GFGLKQRKMAKAERQDRVTQT 117
                 4455667888888888888888877.666666667777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2663.14
//
Query:       EHT99083.1  [L=288]
Description: putative permease component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-11   42.7  30.2      1e-07   31.9  30.2    2.5  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9  30.2   5.6e-12     1e-07      43     175 ..     102     273 ..       6     283 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.6e-12
  BPD_transp_1  43 f........................................vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                                                             i      + ++viil ++ ++py++li+ + lr++ ++ v aar lGa++  ++ 
    EHT99083.1 102 SgllkaplmvhglvaallfinliswqgfinlgllklgiisqPIRMQNDRWGIGVIILQVWKQLPYALLIITGSLRAIGDEIVDAARDLGAGKTARLL 198
                   03333333333333333444445777888888888888888555555666699******************************************** PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadil 175
                   +++lP+++  +  +lil f+g+lg++++    g     ++++  ++ +  ++eis   + ++++++++++l  +v  ++
    EHT99083.1 199 QIILPLSIKAVQVSLILIFIGALGDFSFQVVAG----PTSVFSLSQYMLRFPEISaqgWNLAAVVAVILMLAAFVGAVV 273
                   *********************************....79****************999444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2237.72
//
Query:       EHT99084.1  [L=278]
Description: putative permease component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-11   43.0  20.6    4.1e-11   43.0  20.6    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   9.4      0.71   1.3e+04      20      61 ..      14      55 ..       2      92 .. 0.46
   2 !   43.0  20.6   2.3e-15   4.1e-11       2     177 ..      92     263 ..      87     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 0.71
  BPD_transp_1 20 lrpliivllslPsfvlaillvlvf..vilsilghlilp.viilll 61
                  +   +i++ +l +++l+i+++l +  ++ ++ + +++p ++  +l
    EHT99084.1 14 M---MILITALFMLWLVIPFILTVlwSLVDKTHPWAWPdALPPVL 55
                  3...33334555555444444333343334444444443333333 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 2.3e-15
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   +++++  + +++++++ ll++ i ++l +P fv+a+++ ++  +  ++++ + ++++  ++ ++py+++i    ++++ +d   aar +Gas   +f
    EHT99084.1  92 LPAAWAFG-RMSFTGKSLLQNAILLPLIVPGFVIALFFSML-LNVVGIHSRFVGILLGHTIILMPYAVRILTLSFSQIRQDTLDAARDMGASVVNRF 186
                   56666677.889999**********************9965.555688888888******************************************* PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                       lP + p i++ li++f++++ ++++ +f+ ++p + t+ +  +++  y++i    ++++ +++++ n++++++++
    EHT99084.1 187 LVACLPTIRPGIFAALIIVFTLSIEEFAI-SFIVGSPDFITVPTILYSYLGYNFIR-PNAAVISLMLVVPNVILMLIAE 263
                   ************************99875.666668999999999999********.9999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2279.44
//
Query:       EHT99085.1  [L=248]
Description: glycerophosphoryl diester phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-33  115.8   0.0    4.1e-33  115.2   0.0    1.3  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   2.3e-37   4.1e-33       1     258 [.      18     245 ..      18     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 2.3e-37
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HRGa+   pEnTl+sf++A+e+Ga  iE+Dv+lTkD +pV++HD+ +drtt++ g  +v +ltl+++++ld +  +     +++ ++   ++ptl+e +
  EHT99085.1  18 HRGAPLLAPENTLPSFQAAVEHGATWIEVDVKLTKDRHPVIIHDDAVDRTTNGTG--YVANLTLDQIRSLD-A--GV---CYGHLFK-GVKVPTLAETV 107
                 *******************************************************..**************.3..33...5666664.3789******* PP

                 HHHHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EECHCCCCCCC CS
        GDPD 100 kkpqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaeadssleraakfaka 198
                  ++ + g+ ++ +i+++s ++ e+  +i+  +lks++  +        ++k+++ssf+  +lk   +  p++p  + +  + + + +      + + + 
  EHT99085.1 108 GFVLDKGIGLQLEIKPTSGQEIETA-EIAITQLKSLWPAD--------EKKLFISSFSELSLKVAERIMPDVPRGLAVCVPPSDPVA------LLARTG 191
                 **99999999999999999999999.89999999999997........89*************999999999988777644433333......333333 PP

                 TCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 199 dallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                 +++l   + +a      d +kr++++g++ +  t n++  +  + +l  g + ++ D pd
  EHT99085.1 192 CQILHFLADFATD----DDLKRLADSGIEFAIATINDP--AVARKYLHSGAQTILSDIPD 245
                 3333333333333....566777777777777777777..77777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1911.72
//
Query:       EHT99086.1  [L=359]
Description: putative outer membrane porin C protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-104  350.5  21.7   1.2e-104  350.4  21.7    1.0  1  Porin_1         Gram-negative porin
  ------ inclusion threshold ------
      0.087   13.4   3.1       0.16   12.6   3.1    1.5  1  Fib_succ_major  Fibrobacter succinogenes major domain (Fib_su


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.4  21.7  1.4e-108  1.2e-104       1     340 []      29     359 .]      29     359 .] 0.95

  Alignments for each domain:
  == domain 1  score: 350.4 bits;  conditional E-value: 1.4e-108
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTC...TTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHH CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtege...saqsktrlaFaGLkfgevGsldyGrnygvvydv 96 
                 K+gnkldlygkv+++h+fsd+++edgd++yar+GfKGetqindqLtgygqwEy+++ n++eg    ++ + trl+FaGLk++++Gs+dyGr  gv+y +
  EHT99086.1  29 KNGNKLDLYGKVDARHVFSDNTAEDGDNSYARLGFKGETQINDQLTGYGQWEYNFQLNHSEGGtdaQTGNATRLGFAGLKLADFGSFDYGRSFGVLYTA 127
                 8**********************************************************998643466679**************************** PP

                 HCTTTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS....SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CH CS
     Porin_1  97 eawtdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnnrnlkksngdgygvslsYeveGfalsvagayarsdrtak 195
                 +a+td++p+ g  t++  dnf+ kr++g+at+ ++d+ G    l+  lqyqgkn+++     ++k  ngdgyg++l+Y +  ++ls+a+a  +++rt +
  EHT99086.1 128 SAYTDMAPIYGSGTMTTNDNFLSKRSTGLATWHSPDWNG----LKVILQYQGKNDRS-----TAKLANGDGYGAGLTYSIT-DGLSIAAAGMKANRTLT 216
                 ************************************987....57899*****9995.....67889*************9.79*************99 PP

                 HC......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEE.EEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETT....STCCEEE CS
     Porin_1 196 qklelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvg.asgianktqnlevvaqyqfdfGlrPsiaYvqskgkdleg....kkgdndl 289
                 q+        ++g+g+ a++w +++kYdan+iylaa+Y+e ++ t++g  s+ia kt n+e++aqyqf  GlrPsi++v   g++l+g    + g++++
  EHT99086.1 217 QQ--------ADGQGDDATAWVTSAKYDANQIYLAAMYGEANDVTPYGqLSQIADKTHNFEAIAQYQFLNGLRPSIGFVTQRGENLQGagnfAGGSQTM 307
                 88........5789**********************************55789***********************************999999***** PP

                 EEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSC.CTSSTSC-EEEEEEEEEE CS
     Porin_1 290 vkyvdvGatYyFnKnmsayVdykinlldkdddk.elgistddivavglvyqF 340
                  ky+ vG++YyFnKnm +yVdy+inll+++d + ++gi+t+d v++gl+yqF
  EHT99086.1 308 QKYIAVGTYYYFNKNMLTYVDYRINLLKDNDFTrATGITTKDSVGMGLTYQF 359
                 ***************************999955899***************9 PP

>> Fib_succ_major  Fibrobacter succinogenes major domain (Fib_succ_major)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.1   1.8e-05      0.16      37     154 ..     112     245 ..      74     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
  Fib_succ_major  37 anasengaaygrlYnweavad..................arglcPeGWhiPtdedwqaLeaylgkseaeadagskLksgagekeeeeksatnetg 113
                       ++++g+ +g+lY+ +a +d                  +r+     Wh P+ +  + + +y gk++    + +kL +g  ++     + + + g
      EHT99086.1 112 FGSFDYGRSFGVLYTASAYTDmapiygsgtmttndnflsKRSTGLATWHSPDWNGLKVILQYQGKNDR---STAKLANG--DGYGAGLTYSITDG 201
                     4577889999********999************99999966666679****99999999999999888...99999999..44555555666668 PP

  Fib_succ_major 114 FsalpaGyregdgk..nfkasgkyayfWssteatskaaesrv...l 154
                     +s+ +aG+  + +   +++ +g+ a  W+++++ +  a++++    
      EHT99086.1 202 LSIAAAGMKANRTLtqQADGQGDDATAWVTSAKYD--ANQIYlaaM 245
                     999999998888778899999*******9999877..555554441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2833.76
//
Query:       EHT99087.1  [L=312]
Description: hypothetical protein CKS_1004 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-06   25.7   0.0      0.005   16.3   0.0    2.3  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0031   17.4   0.1      0.018   14.9   0.1    2.0  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.025   15.2   9.4      0.011   16.4   6.8    1.8  2  Abhydrolase_6  Alpha/beta hydrolase family
       0.04   13.5   0.0        6.2    6.3   0.0    2.6  3  DLH            Dienelactone hydrolase family
       0.23   11.4   2.1       0.68    9.9   2.1    1.8  1  TAT_signal     TAT (twin-arginine translocation) pathway sign


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.001       3.7      64      87 ..     142     164 ..     123     168 .. 0.90
   2 !   16.3   0.0   1.4e-06     0.005     106     205 ..     198     294 ..     185     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
                   GGEEEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  64 erlaitGgSyGGyltgaalnqrpd 87 
                   +++ + G S+GG l g+a++ rpd
    EHT99087.1 142 RKVHVLGFSAGGHLLGMAAA-RPD 164
                   78999**************9.887 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.4e-06
                   CSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHH..HH.HHHH CS
  Peptidase_S9 106 sdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpra..kv.eela 199
                   ++    +++ m  gn  + +e    +s  +++++  aypp++l ++  D    p ++  + ++++++ ++v+l      gHg+g ++a   +  + +
    EHT99087.1 198 QH---TNTHLMMVGNDASPQE-EASWSVQNYVTH--AYPPTFLAQAGDDHTSKPFNTQLMRDTCRRNRVPVQLIQLSSGGHGFGLGKAgtPAaLWDQ 288
                   44...3446777788744444.446666667777..9********************************************6665444004444555 PP

                   HHHHHH CS
  Peptidase_S9 200 rllaFl 205
                     +++l
    EHT99087.1 289 AYVKWL 294
                   555555 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     5e-06     0.018      25     209 ..     100     274 ..      76     276 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5e-06
                    HHHHTSEEEEEE---TTTS...-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---..........EEEEEEES CS
  Abhydrolase_3  25 akelgavvvsvdYrlAPeh...pfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk..........vagqvliy 107
                     ++ g++++   Yrl  e+      a+++da +alr l++        ++++ ++G SaGG+l   +a r   ++ p+             + liy
     EHT99087.1 100 LNANGYTAYVLSYRLPREKwqaGNLAPLQDAQRALRLLRSF-------ERKVHVLGFSAGGHLLGMAAARPDFQSYPPidrvdqeipkADSVGLIY 188
                    44455566666666654431112346677777777777776.......789*************99997777765555777777776677888999 PP

                    E-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS.-SST---EEEEEETT-TTHH..HHHHHHHHHHHTT--EEEE CS
  Abhydrolase_3 108 Pvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllae.dlsglpptlvvvaefDplrd..egeayaerlraagveveli 200
                    Pv +le+   + +   +++++  l           ++++++   +  as  +++     +ppt+++ a+ D  ++  +++ + +  r + v+v+li
     EHT99087.1 189 PVITLEA---PYQ---HTNTH--L-----------MMVGNDASPQEEASWSVQNyVTHAYPPTFLAQAGDDHTSKpfNTQLMRDTCRRNRVPVQLI 265
                    9774522...222...11111..1...........1222222222233333332124557777777777777665434566667777777777777 PP

                    EETTEETTG CS
  Abhydrolase_3 201 eyegmvHgf 209
                    + +   Hgf
     EHT99087.1 266 QLSSGGHGF 274
                    777777776 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   1.2e+04     132     140 ..      31      43 ..       7      69 .. 0.46
   2 ?   16.4   6.8     3e-06     0.011       1      95 [.      76     195 ..      75     308 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
                    SCCCCHHH....C CS
  Abhydrolase_6 132 rlfladed....a 140
                    +l+ ++++    +
     EHT99087.1  31 PLWPDEPPggggP 43 
                    3444444433320 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3e-06
                    EEEE--GC..........GCHHHHHHHHCCTCEEEEE--T......TSTS-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHC CS
  Abhydrolase_6   1 vlllHGag.....ssassWlvapLaallaagvhvlapDlp......GhGrsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapl 85 
                    vl + G+g     +++++W va+++++ +    vl++ lp      G          l+d+++ ++ll+++    ++v+++G S GG+l  +aa+ 
     EHT99087.1  76 VLIAAGGGyrwigMGREAWPVAHWLNANGYTAYVLSYRLPrekwqaG------NLAPLQDAQRALRLLRSF---ERKVHVLGFSAGGHLLGMAAAR 162
                    45556766333335599997777755555554447777774432222......337777777779999999...6************988886666 PP

                    C....................EE.....EEES- CS
  Abhydrolase_6  86 a..................lvvg.....vlldp 95 
                    +                  + vg     + l++
     EHT99087.1 163 PdfqsyppidrvdqeipkaDSVGliypvITLEA 195
                    667777766666666665533333333344444 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.39   1.4e+03       7      44 ..      67     108 ..      64     112 .. 0.76
   2 ?    3.8   0.0    0.0098        35      77     119 ..     125     163 ..     111     168 .. 0.74
   3 ?    6.3   0.0    0.0017       6.2     145     189 ..     230     274 ..     218     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.39
         DLH   7 tpknakkpvvvviq....eifGvndnikdiserlaeeGYval 44 
                 +p+n++  +v+++      ++G+  +   ++++l  +GY a 
  EHT99087.1  67 RPENPNGEAVLIAAgggyRWIGMGREAWPVAHWLNANGYTAY 108
                 678888888888753333588888888899999999999985 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0098
         DLH  77 kvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev 119
                 + l+d++ a++ l+s++     kv v Gf  GG l    aa+ 
  EHT99087.1 125 APLQDAQRALRLLRSFE----RKVHVLGFSAGGHLLGMAAARP 163
                 44566667777777777....9************987777765 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0017
         DLH 145 apilalfgeeDefipadevekleealkaanvdlelkvYpgagHaF 189
                  p +   ++ D+  +  +++ ++ +++ + v+++l   +  gH+F
  EHT99087.1 230 PPTFLAQAGDDHTSKPFNTQLMRDTCRRNRVPVQLIQLSSGGHGF 274
                 5777888999999888889************************** PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00019      0.68       1      20 [.       1      20 [.       1      25 [. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
  TAT_signal  1 klSRRdFLKgsAAaaAAaal 20
                +++RR F+ g++A+a  +a+
  EHT99087.1  1 MITRRRFIFGTGALALSLAT 20
                69*************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2284.94
//
Query:       EHT99088.1  [L=112]
Description: hypothetical protein CKS_1005 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   16.7   1.0     0.0074   16.4   1.0    1.1  1  NST1       Salt tolerance down-regulator
  ------ inclusion threshold ------
      0.035   14.2   1.3      0.036   14.2   1.3    1.1  1  7TMR-HDED  7TM-HD extracellular


Domain annotation for each model (and alignments):
>> NST1  Salt tolerance down-regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.0   8.3e-07    0.0074      55     128 ..      23      96 ..      13     110 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.3e-07
        NST1  55 stslstsksvaittssarsvknnppsvssaalrsakkvskdrsiwntss.qE.ereklkeFWlsLgEeERReLvkv 128
                   +  + ++    +ss++sv++  + v+   ++s++  s+++s +n+   +E   +++   Wl+Lg+eER +L k 
  EHT99088.1  23 TEQSAYASQLCHIVSSEKSVSTADQYVE--KMKSSVAGSQSSSAFNKPEfDEeLANEVASAWLQLGDEERAKLRKN 96 
                 2333344446667778888886666666..66777777777777887651332468899***********999775 PP

>> 7TMR-HDED  7TM-HD extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.3     4e-06     0.036      66     125 ..      40     107 ..       5     112 .] 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4e-06
   7TMR-HDED  66 tseenlselieqlkqarekyaqa........gaelsdeelrallelsdeeleelqqgieqilerilsq 125
                 +s ++ ++ +e++k     +++         ++el +e+++a+l+l dee ++l+++++q  +++++q
  EHT99088.1  40 KSVSTADQYVEKMKSSVAGSQSSsafnkpefDEELANEVASAWLQLGDEERAKLRKNTQQCEQTVMTQ 107
                 34445556666666665555444778889998999*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 841.58
//
Query:       EHT99089.1  [L=447]
Description: sodium/hydrogen exchanger family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-36  124.1  39.4    9.1e-28   97.1  21.4    2.0  2  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1  21.4   5.1e-32   9.1e-28       3     251 ..      13     266 ..      11     273 .. 0.93
   2 !   33.1  10.0   1.4e-12   2.6e-08     264     381 .]     319     435 ..     303     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 5.1e-32
                     HHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgllarrlklpeivgliiaGlllGpsglglieps....eedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvl 93 
                     ll+l +l +g+  +r  + +  +++++G+  Gp+g+ +ie +    +e + ++ e+     lF  Gl+l l    + +++  lla++ +l+tv++
      EHT99089.1  13 LLLLMSLASGW-IHRGPVTSFGLFLLTGIACGPWGFDVIEIDilrhAELVAHITEITMAASLFITGLKLRLPLKARQWRAGSLLAFPAMLLTVAA 106
                     66666777777.9************************8888899999************************************************ PP

                     HHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX.XXXXTSSSTSXHHHHHHHHH CS
  Na_H_Exchanger  94 iGlllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalak.eeaggetslllllliflvva 187
                     ++ll ++  ++g+++  al+fgai+++tdpv+++ i     + +  l+  + +e+++nD++a++ll ++l l + e+ g++  + ++++ +++++
      EHT99089.1 107 MTLLSHW--LVGLSWPIALAFGAIVAPTDPVLASLISVSDAQDDDALRVAISSEAGMNDGSALPLLILALLLFNgESLGTGMLARWAAIDVVWAI 199
                     ******9..689*************************988888****************************99877777777777********** PP

                     HHHHHHHHHHHHHHHHHHHHS...CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHH CS
  Na_H_Exchanger 188 vgglllglvigwllrlitrft...dddrelevllvlllallaallaellgvsgilgaflaGlvlsey 251
                     +gg+llg+ +g l+ l+ +++   ++d + + +l+l+l+ l+++lae+lg sg l+ f+aGl l + 
      EHT99089.1 200 GGGILLGFGLGRLVGLLAARLrhaHGDVAPNDFLALALIALSYALAESLGASGFLATFAAGLGLRRA 266
                     ************999999999988999999999****************************988755 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.4e-12
                     HHH...HHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHH..HHHHHHHHHXHHH CS
  Na_H_Exchanger 264 fre...glfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgaval..alaalgpalglla 353
                     f++    l++  + v++G++l       h+++   v l l++++++r+lav+l++ ++g+sl ++l+ig++g+ rg  +l  +++a +   g  +
      EHT99089.1 319 FGDtieRLLAATMMVVLGVTLA------HHWNMQGVMLGLLLFVVVRPLAVWLVTLRCGVSLPHRLLIGWLGI-RGIGSLnyIAFAWVHGMGGSQ 406
                     5555556777777889999999......67777777777777779****************************.776554214555455545555 PP

                     HTT.SSTTTCSTSXHHHHHHHHHHHHHHC CS
  Na_H_Exchanger 354 rel.yallivvvlftvlvqGlslkpllkk 381
                     +++ + ++++ v+++++v+G+s++pll++
      EHT99089.1 407 ATMmVDMALTLVVCSIVVHGVSVTPLLNW 435
                     5555***********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3521.57
//
Query:       EHT99090.1  [L=402]
Description: major facilitator superfamily (MFS) permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-34  118.4  55.6    5.5e-31  107.8  41.3    2.0  2  MFS_1     Major Facilitator Superfamily
      6e-09   35.3  13.0      6e-09   35.3  13.0    2.6  3  Sugar_tr  Sugar (and other) transporter
    0.00076   18.9  39.4      0.005   16.2  39.2    1.9  1  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.027   12.8   0.4      0.027   12.8   0.4    2.9  4  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8  41.3   1.2e-34   5.5e-31       3     318 ..      25     326 ..      23     337 .. 0.87
   2 !   16.9   7.6   5.3e-07    0.0024      98     167 ..     325     393 ..     322     401 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 1.2e-34
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                  +a ls ++++   p+l  +++++++is+ ++g++  l  +g+a+++l+l++l+dr+ rr ++l+  ll++ +lll+ f+ ++ +ll++ +++Gl+ ++
  EHT99090.1  25 TGAGLSVASIYYSQPMLD-IISKQFQISVGSVGMVPMLTQAGYALGILLLAPLGDRHDRRTIILIKGLLLVMALLLCGFSGGISALLIASFITGLT-AT 121
                 677788899999999999.9*************************************999977777777777757777988899***********9.8* PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 ++  ++ + a+++p   r + +g +++g  +G++l  +++g++a+++gWr +++i+a++ ll  +   l+ + ++ +++++ + ++       +lv +w
  EHT99090.1 122 VAQDIVPASAALAPVASRDKTVGTVMTGLLVGILLSRVVSGVVAEYFGWRTMYMIAAVAVLLISLT--LWRVLPRFTPGTSVSYPR----LLLSLVHLW 214
                 ***************************************************************886..9*************9999....777777777 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtss 299
                 +a  + +      +a  l ++ fs++ ++l ++l ++++++    ++++++l++++ga +a+lag ++dr+g+ r + ++ +l++l++++++ll++   
  EHT99090.1 215 RAHQTLRRA---ALAQGLLSVSFSAFWSTLAIMLSDRFHFD--SAIAGAFGLAGAAGALAAPLAGNVADRIGPARVTQFGAGLVTLSFALMFLLPFL-P 307
                 777777744...4444444459999999999999*******..555667************************************************.6 PP

       MFS_1 300 avllllvlvliGfglgfvf 318
                  ++ l+v+++ ++g+ + +
  EHT99090.1 308 LSAQLAVIIISTIGFDLGV 326
                 6666666666555655443 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.3e-07
       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvl 167
                 g  a + a ++li  ++p+  r+r ++ll   + +G++ g++lg+l ++++gW +v ++ +++++l++++
  EHT99090.1 325 GVQATLVAHQTLIYGLVPE-ARSRLNALLFNVVFIGMASGAALGSLALAHWGWNGVVVLSTVAAALSLLI 393
                 5567778889999999999.**********************************************9664 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3  13.0   1.3e-12     6e-09      48     189 ..      55     189 ..      21     197 .. 0.89
   2 ?   -1.3   1.1      0.17   7.6e+02     308     364 ..     243     302 ..     222     320 .. 0.51
   3 ?   -0.4   1.7     0.086   3.9e+02      11      95 ..     319     396 ..     309     400 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.3e-12
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 +g++  ++++G ++G l++ +lgdr +R+ ++li ++l+v + +l++++     + +l+++ +++G+ + +a+ +vP  ++ +Ap + R + v+   ++
  EHT99090.1  55 VGMVPMLTQAGYALGILLLAPLGDRHDRRTIILIKGLLLVMALLLCGFSG---GISALLIASFITGLTATVAQDIVPASAA-LAPVASRDKTVGTVMTG 149
                 677888899*****************************************...9************************987.9**************** PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 + +Gil++ ++  +++++ +   wr +  +++v  ll+++ l+
  EHT99090.1 150 LLVGILLSRVVSGVVAEYFG---WRTMYMIAAVAVLLISLTLW 189
                 ********************...**999998887755555443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.17
                 HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS........CHHHHHHHHHHHHHHH CS
    Sugar_tr 308 iflvdrfGRRtllllGaagmaicfvilgivalllvaks.....kaasivaivfialfialfa 364
                 i+l+drf   +  + Ga+g a ++  l+ + l+++ ++      + +++a   ++ f+ +f 
  EHT99090.1 243 IMLSDRF-HFDSAIAGAFGLAGAAGALA-APLAGNVADrigpaRVTQFGAGLVTLSFALMFL 302
                 5555555.44455555555555555554.111111111234444444444444444444444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.086
                 HHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  11 lfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95 
                  +g+d+gv ++ ++ +  ++   + +++s  +       l+++++++G + G+ +++l+   +G   + + ++v +  + ++  a
  EHT99090.1 319 TIGFDLGVQATLVAHQTLIYGL-VPEARSRLN------ALLFNVVFIGMASGAALGSLALAHWGWNGVVVLSTVAAALSLLIRLA 396
                 5677777777766666633333.333333454......48888888999888888888888888877777777666666666555 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  39.2   1.1e-06     0.005      14     359 ..      39     391 ..      27     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
       MFS_4  14 piLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvl.vfgsslvlahaa 111
                 p+L  + ++ q+s++ +g++     +GY +G ll a    ++  R+ +l+  l+ v++ll +++  +++a+l++ f++G+++ v+  ++ +s +la   
  EHT99090.1  39 PMLDIISKQFQISVGSVGMVPMLTQAGYALGILLLAPLGDRHDRRTIILIKGLLLVMALLLCGFSGGISALLIASFITGLTATVAQdIVPASAALAP-- 135
                 8888899999**********************98866666666777788888889999999*******************99876435555555555.. PP

       MFS_4 112 aarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasa.aae...aakaeqkslpllalllaYglaGfG 206
                  a r++  + +  G  +Gi++s + v+ ++++  ++ ++++++av  +++ l ++ +lpr  +  + + ++      +  +++  l++ +la gl  + 
  EHT99090.1 136 VASRDKTVGTVMTGLLVGILLSRV-VSGVVAEYFGWRTMYMIAAVAVLLISLTLWRVLPRFTPGTSVSyPRLllsLVHLWRAHQTLRRAALAQGLLSVS 233
                 366666667788*********975.6677777888999*********************4433333221222110222334566788999********* PP

       MFS_4 207 YiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgv....llsl..lspsplglivssvllGltflaital 299
                 + +    l  +  d+++   + a +  l+G a ++++ +  +va+r g +r++     +  ++     ll+   ls  ++++i+s +++ l   a+   
  EHT99090.1 234 FSAFWSTLAIMLSDRFHFDSAIAGAFGLAGAAGALAAPLAGNVADRIGPARVTQFGAGLVTLSFalmfLLPFlpLSAQLAVIIISTIGFDLGVQATLVA 332
                 *****99********999999999999******999999*********99998866555544440011444422356678899*******999999999 PP

       MFS_4 300 vlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaa 359
                   +l+  l+p+a+ rl +l+  +  ig + G++l sl  +  g  + +++++ +a++l++
  EHT99090.1 333 HQTLIYGLVPEARSRLNALLFNVVFIGMASGAALGSLALAHWGW-NGVVVLSTVAAALSL 391
                 999****************999999*******999987776553.233333333333333 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   5.9e-06     0.027      14      83 ..      31     100 ..      19     113 .. 0.86
   2 ?   -0.9   0.4     0.081   3.6e+02     340     374 ..     150     184 ..     136     201 .. 0.66
   3 ?   -1.6   0.1      0.13   5.9e+02     300     383 ..     224     305 ..     202     319 .. 0.58
   4 ?   -1.0   0.2     0.088     4e+02     170     194 ..     349     373 ..     308     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  14 amvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslll 83 
                 +++  y + ++  i k+F+++  ++g++ ++ + g++l il+++ +g+r  r  +i i  ll+ ++ ll+
  EHT99090.1  31 VASIYYSQPMLDIISKQFQISVGSVGMVPMLTQAGYALGILLLAPLGDRHDRRTIILIKGLLLVMALLLC 100
                 455567788999******************************************9999999999988887 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.081
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 340 vipgaalGillgGllvkklklsakklaklvlvvsl 374
                 +++g+ l  +++G++ + + +++  +++ v+v+ +
  EHT99090.1 150 LLVGILLSRVVSGVVAEYFGWRTMYMIAAVAVLLI 184
                 35566777778888888888888777666555443 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 300 ilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllslllllll 383
                  l++ + ++ +++f+  l   l  +F+  ++ A  + G++   g al   l+G +  ++ +   +     lv+  ++l++ll++
  EHT99090.1 224 ALAQGLLSVSFSAFWSTLAIMLSDRFHFDSAIAGAF-GLAGAAG-ALAAPLAGNVADRIGPARVTQFGAGLVTLSFALMFLLPF 305
                 455555666666666666666666666666555443.4333322.333445566666665555544444444444444444444 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.088
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 170 lgilyalrilGpalGfllGslllkl 194
                  ++l+ + ++G+a G +lGsl+l  
  EHT99090.1 349 NALLFNVVFIGMASGAALGSLALAH 373
                 578999999***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3002.49
//
Query:       EHT99091.1  [L=310]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-37  127.0   6.7    9.5e-37  126.4   6.7    1.3  1  LysR_substrate  LysR substrate binding domain
    5.8e-19   67.8   0.5    9.7e-19   67.1   0.5    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.042   13.6   0.2      0.083   12.7   0.2    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
      0.089   12.9   0.1        0.4   10.8   0.0    2.1  2  HTH_20          Helix-turn-helix domain
       0.14   12.3   0.0       0.46   10.6   0.0    1.9  1  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   6.7   2.6e-40   9.5e-37       3     208 ..      95     299 ..      93     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 2.6e-40
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE. CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv. 96 
                      + g+Lr+ ap+++++  l+  l +f++ryP++++e   +d  +  d +ae+ +D+ai  g p+d++++a+ Lae p+++va+p+  L +++p+ 
      EHT99091.1  95 DPVGTLRVRAPHAFGQDQLVAPLVDFMRRYPRLRIEWMLND--RTPDFVAEN-VDCAIQVGAPTDPSVVAVLLAEVPRIVVAAPEL-LRQHAPIt 185
                     578*************99999999*****************..*********.********************************8.888***** PP

                     CGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                     + e+L  +p++ l+  ++  +  + +d  +  +l++ ++l+++sl a++ +++aGlG a++++++++++la+grlv   +pe+++p  +++l y+
      EHT99091.1 186 RVEQLGALPWLALTSFYRneIALQHQDKGEPVNLPIAPVLSSDSLYAVRKAALAGLGAAIVSSWVIQEDLAEGRLV-QLMPEWQAPaLPVWLTYP 279
                     ************996666566666666666668888****************************************.****************** PP

                     TTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflreal 208
                       ++ ++++ af ++++++l
      EHT99091.1 280 WASYYPARLTAFFAMIKAVL 299
                     ***************99875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.5   2.7e-22   9.7e-19       3      60 .]      12      69 ..      10      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.7e-22
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++++f+ ++e+gs+++AA +Lg++qp++sr++++LE+ lgv+L+ Rt++ l+LT+ Ge
  EHT99091.1 12 LMHTFIRIVESGSLSAAAVQLGTTQPTISRRLQALEHGLGVKLILRTTHALKLTDDGE 69
                799*****************************************************97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.3e-05     0.083      11      44 ..      21      54 ..      12      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldl 44
                ++g++sa+A +L+    T++ RL+ +e  lg+ l
  EHT99091.1 21 ESGSLSAAAVQLGTTQPTISRRLQALEHGLGVKL 54
                579************************9999876 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011       0.4      26      53 ..      24      50 ..      15      56 .. 0.86
   2 ?   -2.2   0.0       1.3   4.5e+03      12      23 ..     126     137 ..     126     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                -HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20 26 taselaerldlskntlsyHLrvLeeagL 53
                ++s+ a +l++++ t+s++L++L e+gL
  EHT99091.1 24 SLSAAAVQLGTTQPTISRRLQAL-EHGL 50
                78899999***************.7777 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
                 HHHHHHHHSTCT CS
      HTH_20  12 RrrilraLarae 23 
                 R+ri+ +L+++ 
  EHT99091.1 126 RLRIEWMLNDRT 137
                 89*****95554 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.46      13      40 ..      23      49 ..      17      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
      HTH_28 13 hsvreaArelgisrrtvyrWikryeegG 40
                +s ++aA +lg+++ t++r ++++e+ G
  EHT99091.1 23 GSLSAAAVQLGTTQPTISRRLQALEH-G 49
                5899*******************998.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2210.29
//
Query:       EHT99092.1  [L=167]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-35  121.3   4.2    2.3e-35  121.3   4.2    1.6  2  UPF0114   Uncharacterized protein family, UPF0114


Domain annotation for each model (and alignments):
>> UPF0114  Uncharacterized protein family, UPF0114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   4.2   1.3e-39   2.3e-35       1     118 []       9     125 ..       9     125 .. 0.96
   2 ?   -1.7   0.1      0.18   3.3e+03      12      29 ..     140     157 ..     136     163 .. 0.64

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 1.3e-39
     UPF0114   1 lfasRflvllavlglllaslllfikgvlellelvveafkaklteelilavleliDlvLigtvllivglGlYelFvskldleeeeerpewLeirsldeLK 99 
                 ++asR+l++++++gl l++l+l+ik+++e+++l+ ++f+  ++++lil +l+l+D++L+g +l++v+l++Ye+Fvskld++e +e+ +wL++ +  +LK
  EHT99092.1   9 MYASRWLLAPVYIGLSLGLLALTIKFFQEIVHLLPNIFS-IAENDLILLLLSLVDMTLVGGLLVMVMLSGYENFVSKLDIDEGKEKLSWLGKMDSGSLK 106
                 689***********************************6.3555******************************************************* PP

     UPF0114 100 tklakvivailsvhllkkf 118
                 +k+a++ivai+s+hll+ f
  EHT99092.1 107 NKVAASIVAISSIHLLRVF 125
                 ****************976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.18
     UPF0114  12 vlglllaslllfikgvle 29 
                 v+  l  +l  f++g+l+
  EHT99092.1 140 VIIHLTFVLSAFVMGWLD 157
                 556666667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1255.79
//
Query:       EHT99093.1  [L=891]
Description: sensory histidine kinase in two-component regulatory system with KdpE [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-96  319.3   0.1    1.4e-95  318.7   0.1    1.3  1  KdpD       Osmosensitive K+ channel His kinase sensor domain
    3.9e-27   94.1  11.2    8.4e-27   93.1  11.2    1.5  1  DUF4118    Domain of unknown function (DUF4118)
    1.9e-24   86.3   0.0    4.2e-24   85.2   0.0    1.6  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
    1.3e-09   37.9   2.7    1.5e-09   37.8   0.7    2.3  2  HisKA      His Kinase A (phospho-acceptor) domain
    8.5e-08   32.6   0.0    2.3e-07   31.2   0.0    1.8  1  GAF_3      GAF domain
    1.5e-05   25.6   0.3    0.00011   22.8   0.3    2.4  1  Usp        Universal stress protein family
  ------ inclusion threshold ------
      0.013   15.1   1.0        1.6    8.4   0.0    3.0  3  DUF2478    Protein of unknown function (DUF2478)
      0.025   13.7   5.0      0.041   13.0   5.0    1.2  1  MASE1      MASE1


Domain annotation for each model (and alignments):
>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7   0.1   6.2e-99   1.4e-95       1     210 []      21     228 ..      21     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 318.7 bits;  conditional E-value: 6.2e-99
        KdpD   1 krGrlkiflGaapGvGktyamLeeaqelkeegvdvviglvethgrketeallegleviprkeveykgkeleeldldailarkpevvlvDelahtnapgs 99 
                 +rG+lki++Ga++GvGktyamL+eaq+l+++g dv++g+veth+r+et++ll+gl v+pr++  +  ++  e+dlda+lar+p+v+l+Delahtn++gs
  EHT99093.1  21 HRGKLKIYFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHERPETAQLLNGLVVLPRRA--TGRSRHAEFDLDAALARHPAVILMDELAHTNVKGS 117
                 59**********************************************************87..4577889**************************** PP

        KdpD 100 rhekryqdveelLeagidVittvnvqhleslndvvekitgvrvretvPdevleeAdevelvDltpeeLlerLkegkvykkekaeralknffrkgnLtaL 198
                 rh+kr+qd+eelL+agidV+ttvnvqhleslndvv  +tg++vretvPd ++++Adev+lvDl+p++L++rLkegkvy  ++aera++nffrkgnL aL
  EHT99093.1 118 RHPKRWQDIEELLDAGIDVLTTVNVQHLESLNDVVGGVTGIQVRETVPDPFFDSADEVVLVDLPPDDLRQRLKEGKVYIGDRAERAIENFFRKGNLFAL 216
                 *************************************************************************************************** PP

        KdpD 199 RelaLrrvAdrv 210
                 RelaLrr+Adrv
  EHT99093.1 217 RELALRRTADRV 228
                 **********98 PP

>> DUF4118  Domain of unknown function (DUF4118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1  11.2   3.8e-30   8.4e-27       3     106 ..     401     504 ..     399     505 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 3.8e-30
     DUF4118   3 lavlllalatllallldkllslanivllfllavllvallgglgpgllaallsvllfnyfftpPyftltiadpeylltlvvflvvallvstlvararrqa 101
                 +a++l++l+t+++  +   ++ an v+++llav++val++g++p+++a+++ +++f+ ff++P  t++++d +yl+t++v+l+v+++v++l+a +r qa
  EHT99093.1 401 MALVLCILVTAAGQSVLISFDPANCVMIYLLAVVIVALRYGRWPSVIATVINIIAFDLFFVAPKGTIAVSDLQYLVTFGVMLAVGVIVGNLTAGVRYQA 499
                 5677777777777766333778***************************************************************************** PP

     DUF4118 102 rqare 106
                 r ar 
  EHT99093.1 500 RVARY 504
                 **986 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   1.9e-27   4.2e-24       1     111 [.     771     880 ..     771     881 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 1.9e-27
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 gd++ L++++ nl++N++k+a+++    ++   +  +l+i+v+D G+Gi ++d+ ++f+kfs+ +++++   g+GlGl+i+k ++e +gG+iw e++p+
  EHT99093.1 771 GDSTLLERVFTNLIENSLKYAGNCAPRGIRAWCDHARLEITVWDGGPGIAEQDMTRIFDKFSR-GDKESAVPGVGLGLAICKTIIESHGGQIWAENRPE 868
                 79999***************9999999999998778***************************.9999999**************************** PP

                 TEEEEEEEEESS CS
   HATPase_c 100 rGttftftlple 111
                 +G +f+++lpl+
  EHT99093.1 869 GGACFRLSLPLP 880
                 *********986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.3   9.6e+03      20      41 ..     487     512 ..     486     519 .. 0.60
   2 !   37.8   0.7   6.6e-13   1.5e-09       2      67 .]     661     727 ..     660     727 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.3
                 HHHHHHHHHC......T-HSSCHHHH CS
       HisKA  20 ilgnaeaLkre....gklteelkeyl 41 
                 i gn+ a  r+    ++++e+  ++l
  EHT99093.1 487 IVGNLTAGVRYqarvARYREQRTRQL 512
                 67888887775555555555555554 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 6.6e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 ++ +l+ ++H+LrtPL+++ g ae+L+ + ++ + +   +  +i++++    +lv+++Ld++ri++g
  EHT99093.1 661 RNALLSALSHDLRTPLTVLFGQAEMLMLDlASDNSKYVPQASQIREQTLSTIRLVSNMLDMARIQSG 727
                 5679*********************955334444555559999*********************987 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     1e-10   2.3e-07       5     129 .]     528     641 ..     524     641 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1e-10
       GAF_3   5 llekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedglpdraalavPLvagrqviGvlalast 103
                 +++++++ l  +l+a ++ lll d ++ +lq+  +  +++ ++++       a++ +s g+    p++a++d+lp  ++ ++PL++g+  +G+l+++  
  EHT99093.1 528 IAATSQRVLDATLQA-RSLLLLPD-EQGELQTLGNALPGNEPHWA------IAKWSYSKGQ----PAGAGTDTLPAVPYQILPLKVGESCRGLLVVEPE 614
                 555555555555555.33343444.33444444333223334334......3456666665....56899**************************988 PP

       GAF_3 104 kpra.fdaedlelleslArqiataier 129
                 + r+ + +e+++lle+++ +ia+a+er
  EHT99093.1 615 NVRQlMIPEQQRLLETFTVLIANALER 641
                 877758********************8 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.3   4.8e-08   0.00011       3     127 ..     249     355 ..     247     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.8e-08
                 SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHH CS
         Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaee 101
                 + Il+++ + + s+k+++ A++la++ g+e ++++v  pr +    + +++  +  +  +e+                +++ ++ + d a++ l++a+e
  EHT99093.1 249 DAILLCIGDDTGSEKLVRTAARLAARLGSEWHAVYVETPRLKRLPEARRRAILRTLKLAQEM---------------GAETATLSDPDDAQAVLRYARE 332
                 679*********************************99999988888888888888888887...............5578999999999999999999 PP

                 TTSSEEEEESCCSSTTTTCSSBHHHH CS
         Usp 102 edadliVvGsrgrsglsrlllGSvse 127
                 +d   iV+G+r    ++r    S++e
  EHT99093.1 333 HDLGKIVTGRRP---VRRWRRDSFAE 355
                 999999999998...34444445555 PP

>> DUF2478  Protein of unknown function (DUF2478)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.018        39      18      42 ..      43      68 ..      34      83 .. 0.80
   2 ?    8.4   0.0    0.0007       1.6      87     145 ..      94     155 ..      85     163 .. 0.75
   3 ?   -1.9   0.0      0.98   2.2e+03      48      97 ..     502     546 ..     482     549 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.018
     DUF2478 18 afaerlraeGlrv.aGvvqenaeeae 42
                + a+rlra+Gl+v +Gvv++++++++
  EHT99093.1 43 QEAQRLRAQGLDVlVGVVETHERPET 68
                4589*******9857***99998765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0007
     DUF2478  87 eralaegadlvivnkFGkqEaeGrGl...reeiaaalaagiPvltaVseklleaWraFaggl 145
                  +ala++++++++   ++   +G+      + i++ l agi vlt+V+ ++le+ ++ +gg+
  EHT99093.1  94 DAALARHPAVILMDELAHTNVKGSRHpkrWQDIEELLDAGIDVLTTVNVQHLESLNDVVGGV 155
                 5666666666666666666666654311146899***********************99986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.98
     DUF2478  48 meledlatgeririsqdlgsgsqgCrLdpeaLaeaaaaveralaegadlv 97 
                  + ++ +t + +++ ++lgsg     L pe +a+ +++v  a  ++  l+
  EHT99093.1 502 ARYREQRTRQLYEMAKSLGSG-----LTPEDIAATSQRVLDATLQARSLL 546
                 455666677777777777776.....677777777777776665555555 PP

>> MASE1  MASE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.0   1.8e-05     0.041     196     296 ..     399     488 ..     381     498 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
       MASE1 196 lfalllllllvlll.lllllpfednsplayLllppvlwaAfrfgvrgaslallllavllilftaqgqgpfvqdsgaessaaillqlflavlalvaLlvs 293
                 ++++l+l++lv+++ + +l++f+ +  + +++l+ v+++A+r+g + +++a+++  +   lf+++  g++++             l+++v++ v+L+v+
  EHT99093.1 399 VMMALVLCILVTAAgQSVLISFDPANCV-MIYLLAVVIVALRYGRWPSVIATVINIIAFDLFFVAPKGTIAV-----------SDLQYLVTFGVMLAVG 485
                 5677777777666515555565555444.6********************5555555444444444444444...........4455555555555555 PP

       MASE1 294 aai 296
                 +++
  EHT99093.1 486 VIV 488
                 544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5659.56
//
Query:       EHT99094.1  [L=189]
Description: potassium translocating ATPase, subunit C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-70  235.8   0.0    3.3e-70  235.6   0.0    1.0  1  KdpC      K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.6   0.0   1.9e-74   3.3e-70       2     181 ..       5     186 ..       4     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 235.6 bits;  conditional E-value: 1.9e-74
                 HHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHTT-EEE.ETEEEEETTT------SSS--------S...T-TTT-------SS-HHHHHHHHHHHH CS
        KdpC   2 rkalrlllvltvllgliYplavtgiaqllfpeqAnGslieadgkvvGseligqeftsdkYfhgRpsavn...ynaaasggsnlgpsnpellerveerva 97 
                 r+a+ lll+ltv++g++Ypl++tg+aq+lfp+qAnGsl++++g+  Gs+ligq+f+++  f+gRpsa++   yn+ as+gsnl++snp+l ++v+erva
  EHT99094.1   5 RPAIFLLLLLTVVCGVVYPLLTTGLAQWLFPWQANGSLLKVEGEERGSALIGQAFSQPGEFWGRPSATGdkpYNPLASSGSNLAASNPALDKAVAERVA 103
                 789************************************************************************************************ PP

                 HHHHH-TTS..-SB-HHHHS-BSSS---EE-HHHHHHTHHHHHHHHT--HHHHHHHHHHTEE--SSTTT---EEEHHHHHHHHH CS
        KdpC  98 alraenpekkkeevPadlvtaSgSGLDPhIspeaAelQvarvakarglseeeveklvaentegrllgilGeprVnVlklNlaLd 181
                 alra+np+++  +vP+dlvt+S+SGLDP+Isp+aA +Q++rva+ar+l+ ++v +lv++ t+++ll ++Gep+VnVl+lNlaL+
  EHT99094.1 104 ALRAANPQAN-GPVPVDLVTSSASGLDPEISPQAALWQAPRVAAARQLPLAKVDALVDSLTQRPLLPFIGEPTVNVLQLNLALN 186
                 ******9985.59*********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1403.15
//
Query:       EHT99095.1  [L=674]
Description: potassium translocating ATPase, subunit B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-34  120.6   3.6    1.9e-34  119.8   3.6    1.4  1  Hydrolase     haloacid dehalogenase-like hydrolase
      1e-29  103.3   0.6      1e-29  103.3   0.6    2.7  3  E1-E2_ATPase  E1-E2 ATPase
    2.1e-05   24.4   0.7    0.00017   21.4   0.3    2.2  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
    0.00022   21.7   0.7     0.0012   19.3   0.2    2.3  2  HAD           haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   3.6   4.1e-38   1.9e-34       1     210 []     293     522 ..     293     522 .. 0.87

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 4.1e-38
                 SSEEEEESBTTTBCHHHHHHHHHHHH.....CHHHHHHHHHH.HHCHHHHHHHHHHHHH....HHHHHHHHH.ETTTE.............HHHHTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.xxxxxxxxxxxxxxxx....xxxxxxxxx.xxxxx.............xxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.....alalaaaletg.sehpigkalvaaakar....sgaltgfat.figrg.............ayaigkpe 75 
                 ++++++Dk+GT+t g+++ +++++       +la aa+l+    e+p g+ +v  ak+     + +l+++++ fi +               + +g ++
  EHT99095.1 293 VDVLMLDKTGTITLGNRQATQFLPAPgvteeQLADAAQLASLaDETPEGRSIVVLAKQKfnlrERDLSSMGAsFIPFSaetrmsgvnvqnrLIRKGAVD 391
                 5899************999997776677766688888888889*********99999999999444444444322222444666677899999999999 PP

                 HHHHH......HCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEH CS
                 xxxxx......xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  76 wltal......dippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdavias 166
                  ++++       +p +++a++++  ++g t  ++    ++l+v++++d   vk +++e +a+L+++gi++v++tgdnp ta ++a ++G          
  EHT99095.1 392 AVRRHieashgAFPAEVNARVEEVARAGGTPLVVaeGPKVLGVVALKDI--VKGGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAG---------- 478
                 9999999999************************54449**********..**************************************.......... PP

                 HCES.STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 167 diet.vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ++   +++ pe+k+a+ir++q++++ vam GDg nDa+ala+A+
  EHT99095.1 479 -VDDfLSEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQAD 522
                 .6667***************************************8 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.8       1.5   6.5e+03     123     155 ..      35      70 ..      29      78 .. 0.58
   2 !  103.3   0.6   2.3e-33     1e-29      13     178 ..     115     274 ..     104     277 .. 0.89
   3 ?   -1.2   1.0      0.28   1.2e+03     117     163 ..     575     628 ..     553     641 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
                   HHHHHHHHHHHHHS-STTTSSTT...HHHHHHHHHH CS
  E1-E2_ATPase 123 vpvvlliallvflialllgksla...eallralall 155
                   ++vv l +ll+ ++a+l+  + +    +++ a+++ 
    EHT99095.1  35 MFVVYLGSLLTTVLAVLMSTGYQtgsASFTGAVSVW 70 
                   455555555555555555544444446666666665 PP

  == domain 2  score: 103.3 bits;  conditional E-value: 2.3e-33
                   TS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-T...TEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS----- CS
  E1-E2_ATPase  13 gteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekg...dmvfsGtvvvsgeakavVtatgedtelgkiarlveeaks 106
                    ++++i+a+el+ GD vl++agd++p+Dg++veg a+vdesa+TGEs pv +e g    +v++Gt ++s+ +++   a   +t+l++++++ve a++
    EHT99095.1 115 AKWQQIAADELRKGDAVLVEAGDVIPCDGEVVEGGASVDESAITGESAPVIRESGgdfASVTGGTRILSDWLVITCSANPGETFLDRMIAMVEGAQR 211
                   58**************************************************744222689************************************ PP

                   ---HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 107 kktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrl 178
                   +ktp +  l       ++v ll++++++ +  + g +   +++  +allv+ iP  ++ +++ + ++g++r+
    EHT99095.1 212 RKTPNEIAL-------TIVFLLATVTLWPFSAWGGTP--VTITVLVALLVCLIPTTIGGLLSAIGVAGMSRM 274
                   ****99865.......566677777777777665555..59999**************************99 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.28
                   HHHHHHHHHHHHHHHHHHHS-ST...TTSSTT....HHHHHHHHHHHHHS-TTH CS
  E1-E2_ATPase 117 klgkvlvpvvlliallvfliall...lgksla....eallralallvaaiPcaL 163
                    ++k+++++  ++a++   +++l     +s+      a+++   l+v  iP aL
    EHT99095.1 575 DVAKYFAIIPAAFAATYPQLNMLnvmELHSPSsailSAVIFNALLIVFLIPLAL 628
                   444444444333333332222220003333333333333333334555555555 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.087   3.9e+02      20      57 ..     445     482 ..     438     486 .. 0.87
   2 !   21.4   0.3   3.7e-08   0.00017     194     242 ..     493     541 ..     489     548 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.087
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSE CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgldlp 57 
                  +ke +++l++ gik v  TG ++ ++  ++ e g+d +
   EHT99095.1 445 IKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDF 482
                  5778899*********************9999999876 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3.7e-08
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEE CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyv 242
                  +l+ +++ +   v+  GDg ND + L +a+++vAm+++++ +k+a ++v
   EHT99095.1 493 ALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMV 541
                  6788999999999*******************************98876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   5.7e+03      43     101 ..      77     128 ..      58     136 .. 0.56
   2 !   19.3   0.2   2.7e-07    0.0012      50     186 ..     389     517 ..     365     519 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
         HAD  43 frellrldraglaelleallagls.eelaaelerfvaevirpklldpgalellaahraaG 101
                 f+ +++   +g+ +++++ l+g +   +a+ l ++         +  ++ ++ a  +++G
  EHT99095.1  77 FANMAEALAEGRSKAQANSLKGVKkTSFAKKLSAAH--------YGAKWQQIAADELRKG 128
                 444455555555566666666666555555555555........3234444444444444 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.7e-07
         HAD  50 draglaelleallaglseelaaelerfvaevirpk................lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatel 132
                   +++++++ea ++++++e++a++e+  ++  +p                 + + g++e++a+ r+ G+++v+++g +   + +++ae g+d++l++  
  EHT99095.1 389 AVDAVRRHIEASHGAFPAEVNARVEEVARAGGTPLvvaegpkvlgvvalkdIVKGGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLSE-- 485
                 45589999********************777777777777778888876666877***********************************8888777.. PP

         HAD 133 evddrltgelglegkpvrgegkvaalrewlaaegegidleevvay.GDspsDlpl 186
                       t            e+k+a +r+ ++aeg       +va  GD+ +D p+
  EHT99095.1 486 -----AT-----------PEAKLALIRQ-YQAEG-----R-LVAMtGDGTNDAPA 517
                 .....22...........3344555555.22222.....1.33333666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5020.47
//
Query:       EHT99096.1  [L=560]
Description: P-type ATPase, high-affinity potassium transport system, A chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-239  796.0  36.7   1.5e-239  795.8  36.7    1.0  1  KdpA      Potassium-transporting ATPase A subunit


Domain annotation for each model (and alignments):
>> KdpA  Potassium-transporting ATPase A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  795.8  36.7  8.2e-244  1.5e-239       2     547 .]      11     554 ..      10     554 .. 0.99

  Alignments for each domain:
  == domain 1  score: 795.8 bits;  conditional E-value: 8.2e-244
                 HHHHHHHHHHHHHHHHHHHHHTT-...--SS-SHHHHHHHHHHT---.----HHHHHHHHHHHHHHHHHHHHHHHHTTTTSS--SS------HHHHHHH CS
        KdpA   2 lllllllllalplgkylakvfegektlldkllkpverllyrllgvdeeeemtwkeYalalllfnlvlllllylllrlqgvlplnpeglealspdlafnt 100
                 ++ll+l++la plg+ la++++++     +l+++ e l++r++gv+ + +m+w +Y+la++lfnl++l+ll+++l+lq+ lplnp++++als+dla+nt
  EHT99096.1  11 VYLLVLMVLAQPLGRGLAALVADK-----PLFTRAEALFWRVAGVQ-QGDMRWPQYLLAIVLFNLFGLILLLAILLLQDKLPLNPQHFPALSWDLALNT 103
                 7899*****************999.....5899************9.89************************************************** PP

                 HHHHHTT-----S-HHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHS-S-S----HHHHHHHHHHHTHHHHHHHHHHHHHHHT--------EEE CS
        KdpA 101 avSFvtntnlQhYsgestlsylsqmlgltvlnFvsaatGlavavalirglarketkelGnfyvdlvrailrvLLPlslvvalllvaqGvpqtlsgkaev 199
                 a+SFvtntn+Q+Ysgestlsy+sqm+gltv+nF+saatG+ava+alirg+a+++  +lGn + dl+r++l+vLLP+sl++al++v+qG +q++ +++++
  EHT99096.1 104 AISFVTNTNWQAYSGESTLSYFSQMVGLTVQNFFSAATGIAVAFALIRGFANRSIATLGNAWRDLTRVTLYVLLPVSLLMALFFVSQGSIQNVLPYQTI 202
                 *************************************************************************************************** PP

                 E-SSS-EEEE--SSHHHHHHHHHHTT----SSSSTTTSTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHTS-THHHHHHHHHHHHHHHHHHHHHHHHHH CS
        KdpA 200 ttlegakqtialGpvAsleaIkqlGtnGGGffgaNsahpfenptaltnlleilaillipaalvftfGrmvkdkrqglailavmlvlflvllvvvvvaea 298
                 t l+ga+qt+a+GpvAs+eaIk+lGtnGGGff+aNsahpfenptaltn++++l+i+lipaal+f+fG++vkd+rqg ++l+ m+++f+v++++v++ae+
  EHT99096.1 203 TGLDGAQQTLAMGPVASQEAIKMLGTNGGGFFNANSAHPFENPTALTNFVQMLSIFLIPAALCFAFGECVKDRRQGNMLLWSMTLMFVVAAAFVMWAEV 301
                 *************************************************************************************************** PP

                 H--HHHHH....-----TTB-SSS-HHHHHHHHHHHHHTT----SS-GGGS-HHHHHHHHHHHHT.S-TT-TTTHHHHHHHHHHHHHHHHHHHHHTS-- CS
        KdpA 299 agnpalae..eqaggnmeGkEvrfGiaasalfavvttatstGavnamhdsltplgglvpllnmml.evvfGGvGvGllnllvfvilavFiagLmvGrtP 394
                 +gnp++ +  + ++ nmeGkE+rfGi +s+lfav+tta+s+Gavnamhds+t+lgg+vp+l m+l ev+fGGvG+Gl+++l+fv+lavFiagLm+GrtP
  EHT99096.1 302 NGNPHFLTlgADSAINMEGKETRFGILNSSLFAVITTAASCGAVNAMHDSFTALGGMVPMLLMQLgEVIFGGVGAGLYGMLLFVLLAVFIAGLMIGRTP 400
                 *****9999988999************************************************************************************ PP

                 EETTEE--HHHHHHHHHHHHHHHHHHHHHHHHHTTSH.HHTT--S-THHHHHHHHHHHHHHHTT-----S-S---SHHHHHHHHHHHHHHHHHHHHHHH CS
        KdpA 395 eylgkkiearevklaalaiLvhpllilvgtalalalp.alaslsnpgahglsevLYeftSaaanNGSafeGlgdntvfwnltlglamllgRflpiiavl 492
                 e+lgkkie  e+k++alaiLv+p+l+l+gta+a++++ ++a ++npg+hg+sevLY+++Saa+nNGSaf+Gl++nt+fwn++l+++m+lgRf +i++v+
  EHT99096.1 401 EFLGKKIEVWEMKMTALAILVTPALVLIGTAIAMMTDaGRAGMANPGTHGFSEVLYAVSSAANNNGSAFAGLSANTPFWNVLLAICMFLGRFGIILPVM 499
                 ************************************978888********************************************************* PP

                 HHHHHHHTS------TT---SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH CS
        KdpA 493 aiAgslaakkkvpesagtlktdtplFvvllvgvilivgaLtFlPalaLGPiaehl 547
                 aiAgs+a kk +p  +gtl+t++plF++llvg++l+vgaL F+PalaLGP+aehl
  EHT99096.1 500 AIAGSMAGKKIQPVGNGTLPTHGPLFIALLVGTVLLVGALIFIPALALGPVAEHL 554
                 *****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4007.35
//
Query:       EHT99097.1  [L=388]
Description: metal-dependent phosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-18   65.3   0.1    1.3e-17   64.6   0.1    1.3  1  DUF3391   Domain of unknown function (DUF3391)
    7.2e-15   55.0   0.0    1.2e-14   54.2   0.0    1.4  1  HD_5      HD domain
    9.4e-14   51.7   0.4    1.5e-13   51.0   0.4    1.3  1  HD        HD domain
     0.0095   15.4   0.4      0.021   14.3   0.4    1.6  1  HDOD      HDOD domain


Domain annotation for each model (and alignments):
>> DUF3391  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1     3e-21   1.3e-17       2     132 ..       3     110 ..       2     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 3e-21
     DUF3391   2 kkIpvsqLrpGMfvvkldgsWldhpflrssflikseadierLrasgiqeVwidtdksdeeelagldvpaaeaaeeakaaeesaeleeekqerperleae 100
                 k I +++L+ GMfv kl+  W+++   r+++li+++++++  r+ giq +wid +ks + +++++ v+ a+ +                      +   
  EHT99097.1   3 KLITIDELKTGMFVLKLEVWWFKDKRIRNQMLITDPQQVAMFRREGIQRLWIDEEKSISSPPPEP-VHTAPCQ----------------------QAPF 78 
                 88******************************************************333333333.2222111......................1112 PP

     DUF3391 101 reeleraeklyeeakqlvrslfsdvrlgkaid 132
                  +e e+a++l+e+ k  v +lf+++r+g  +d
  EHT99097.1  79 TQEREQAQQLFEQGKIKVLALFNEARMGCGLD 110
                 239************************97665 PP

>> HD_5  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   2.8e-18   1.2e-14       2      63 ..     197     257 ..     196     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 2.8e-18
        HD_5   2 tLtpeerellqehpeaaarlLsklprlpkdvaeiigqhhErldGsGyPrglkgeeIpleaRi 63 
                 +L+++e  ++ ehp a+a++L  ++   +d  +i+++hhE++dGsGyP + kg eI++ +R+
  EHT99097.1 197 KLSDDEFAIMCEHPIAGAQMLMEAN-AGDDLVDIALHHHEKYDGSGYPYRHKGHEISVYSRM 257
                 799**********************.667********************************8 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.4   3.4e-17   1.5e-13       2     121 ..     146     266 ..     145     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 3.4e-17
                 HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHTTTTHHHHTS..HHH.....HHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH CS
          HD   2 leHsleVaklarrlaedlge.eedrellllaaLlHDiGkgpfgdafekk.....eeefekflaHekvgaeilrevekrlgldledvaklirehhesweg 94 
                 + Hs++V  l+  l+++lg+     +++ +++LlHDiGk  ++ ++++k      +ef ++ +H + ga++l e+   +     d+++++++hhe+ +g
  EHT99097.1 146 YLHSMAVCGLMIALGKKLGLdAHQLQRVGMGGLLHDIGKAAVPLSILNKpdklsDDEFAIMCEHPIAGAQMLMEANAGD-----DLVDIALHHHEKYDG 239
                 67*****************99889999**********************76665444******************8888.....99************* PP

                 HHHHHHHHCCTSCHHHHHHHHHHHHHH CS
          HD  95 kkrprglaerqlslearivklaDrlaa 121
                 +++p + ++ ++s ++r + ++D ++a
  EHT99097.1 240 SGYPYRHKGHEISVYSRMATICDVYDA 266
                 ************************998 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   4.6e-06     0.021      96     136 ..     146     188 ..     130     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHHHHHHHHHTT-S-H..HHHHHHHHTTTHHHHHHH CS
        HDOD  96 wehslavAlvarelaeelgledp..eeaflaGLLhdiGklvll 136
                   hs+av  ++ +l ++lgl++   +++ ++GLLhdiGk ++ 
  EHT99097.1 146 YLHSMAVCGLMIALGKKLGLDAHqlQRVGMGGLLHDIGKAAVP 188
                 56999*************9999547**************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2974.91
//
Query:       EHT99098.1  [L=166]
Description: histone acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-19   69.7   0.0    2.8e-19   69.5   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.3e-13   49.8   0.0    6.3e-13   49.6   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.3e-11   44.8   0.0    1.9e-11   44.2   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.9e-11   44.0   0.0    2.6e-11   43.6   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    7.2e-09   36.0   0.0    8.5e-09   35.7   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    1.8e-06   27.7   0.0    4.6e-06   26.4   0.0    1.7  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    2.4e-05   24.4   0.0    4.7e-05   23.4   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    0.00012   21.9   0.0     0.0002   21.3   0.0    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.029   14.5   0.0    1.5  1  Acetyltransf_6   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   1.4e-22   2.8e-19      19     117 .]      39     137 ..      17     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 1.4e-22
                     HHHHHHHHHHHSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHH CS
  Acetyltransf_1  19 aseeefeesfsleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaair 110
                     ++e  f++    +ae    +vae dge +G ++l+ + ++++++++  ++ V+p++ g+G+G +L+++++++ar++ gi++++l+v+ dn++a +
      EHT99098.1  39 TWEKKFAKM---DAEgfINFVAEVDGEMVGELTLFTNHNPRTRHCISFGIGVNPAFSGRGIGELLIRTAMDYARNWlGITRMELEVFHDNHRALA 130
                     223334444...444344455************************************************************************** PP

                     HHHHTTE CS
  Acetyltransf_1 111 lYeklGF 117
                     lYe+lGF
      EHT99098.1 131 LYERLGF 137
                     ******9 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   3.2e-16   6.3e-13       2     138 .]       3     138 ..       2     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.2e-16
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry...lpepltleeaeewlerawaeeseeeg.ygwaivlkdtgviGsvglrdleeedee..aelgymlaps 90 
                     ++Lr  +++D++a+ +l+ +p+v  +   lp  ++++  e+++++ +    + eg  +++ ++ ++ ++G   l+  ++ +++  + +g+ ++p+
      EHT99098.1   3 ITLRGREPHDAAAYQRLYGHPAVFPWtlqLPF-PSVATWEKKFAK-M----DAEGfINFVAEVDGE-MVGELTLFTNHNPRTRhcISFGIGVNPA 90 
                     789999********99******9999654333.334444555553.2....236636688855666.9****9999999888899********** PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     f g+G++    r +++ya + lg++r++ ++  +N++  +++e+lGfe
      EHT99098.1  91 FSGRGIGELLIRTAMDYARNWLGITRMELEVFHDNHRALALYERLGFE 138
                     ***********************************************7 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   9.4e-15   1.9e-11       5      76 .]      54     139 ..      50     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 9.4e-15
                     EEEEEETTEEEEEEEEEEES.....TCTEE...EEE-GGGTTSSHHHHHHHH....TT..SEEEEE.EEEE..THHHHHHHHHHTTEEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld.....aeitr...laVdpeyrgkGiGraLlea....ae..kgiile.qlel..naekaikfYeklGFee 76 
                      fVae dg+ vG++ l  +      ++      + V+p++ g+GiG  L++     a+   gi+   +le+  ++++a+++Ye+lGFe+
      EHT99098.1  54 NFVAEVDGEMVGELTLFTNHnprtrHC--IsfgIGVNPAFSGRGIGELLIRTamdyARnwLGIT-RmELEVfhDNHRALALYERLGFER 139
                     59**********999999888876433..2458*****************95355411466644.333444534459**********95 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.3e-14   2.6e-11      25     113 ..      46     144 ..      31     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.3e-14
  Acetyltransf_10  25 rieegealllvaeeggkivGviel.rdgs....hisll..fVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYeklGFka 108
                      +++++  + +vae++g++vG ++l ++++    h   +   V+p++ g+Gig+ L+ ++ ++a+++ + +  el+v  ++  a ++Ye+lGF++
       EHT99098.1  46 KMDAEGFINFVAEVDGEMVGELTLfTNHNprtrHCISFgiGVNPAFSGRGIGELLIRTAMDYARNWLGITrmELEVFHDNhRALALYERLGFER 139
                      45699999****************99999988733332348************************987778********99************9 PP

  Acetyltransf_10 109 vgeeq 113
                       g  +
       EHT99098.1 140 EGVRR 144
                      97765 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.3e-12   8.5e-09       4     154 ..       8     157 ..       5     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.3e-12
  Acetyltransf_4   4 ateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvaesdrivGyaylg.qfkkrakdwkaelsvylaerdnnkeglgre 97 
                      ++ Da++++++y  + v   +t +   +sv   ek  +++d+e+ + f ++ ++++vG ++l  + ++  ++ +++ +   ++ + + +g+g  
      EHT99098.1   8 REPHDAAAYQRLYGHPAV-FPWTLQLPFPSVATWEKKFAKMDAEGFINFVAEVDGEMVGELTLFtNHNP--RTRHCISFGIGVNPAFSGRGIGEL 99 
                     5789*********66555.4788888889999999888888677777776666*********9956666..7777765544345778999***99 PP

  Acetyltransf_4  98 lidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                     li   ++++    +i++++ e++ +n  + +++++lGFe +g  ++++   g+  D +
      EHT99098.1 100 LIRTAMDYArNWLGITRMELEVFHDNHRALALYERLGFEREGVRRQASLREGKLHDVV 157
                     *********8889******************************999998888877765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.3e-09   4.6e-06      83     141 ..      82     141 ..      10     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.3e-09
                     EEEES.SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  83 Hllig.eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                      + ig ++++ g+g++  l+r+ ++y+ +  +++r+ +E  ++N+ra++l+e++Gfe+e+
      EHT99098.1  82 SFGIGvNPAFSGRGIGELLIRTAMDYARNWLGITRMELEVFHDNHRALALYERLGFEREG 141
                     344555799************************************************987 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.3e-08   4.7e-05       2      55 ..      55     110 ..      54     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.3e-08
  Acetyltransf_CG   2 feltldegeevafleY.e..vrkeg...vldfthTeVpeelrGkGiAkkLvkaalddare 55 
                      f +++d ge v++l+  +  +       + +   + V++++ G+Gi++ L+++a+d+ar+
       EHT99098.1  55 FVAEVD-GEMVGELTLfTnhN---PrtrHCISFGIGVNPAFSGRGIGELLIRTAMDYARN 110
                      778887.88899998723222...134477788899**********************95 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-07    0.0002      26      80 ..      84     140 ..      73     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1e-07
                 EEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EE.EEEETT-HHHHHHHHHHT-EEE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiae.rgktvl.lvvvasNtpsirlyeklGfeki 80 
                 ++ v+p + +rG g +l++      ++  g+t + l v  +N+++ +lye+lGfe  
  EHT99098.1  84 GIGVNPAFSGRGIGELLIRTAMDYARNwLGITRMeLEVFHDNHRALALYERLGFERE 140
                 67899*************9888888888***987467889**************975 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.4e-05     0.029      74     133 ..      55     119 ..      13     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
  Acetyltransf_6  74 yvlrldgrpvAvalglrsgd....rlyywlggydpelaklspgllllweliedaae.eGlrrfdl 133
                     +v+++dg+ v+ + ++  ++    +++ + +g++p++++ ++g+ll++ +++ a+   G++r++l
      EHT99098.1  55 FVAEVDGEMVGELTLFTNHNprtrHCISFGIGVNPAFSGRGIGELLIRTAMDYARNwLGITRMEL 119
                     788999999998866666655533455566677*********************99788888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1382.58
//
Query:       EHT99099.1  [L=610]
Description: ATP-binding and permease components of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-34  117.9   0.1    1.1e-33  116.6   0.1    1.7  1  ABC_tran      ABC transporter
    2.5e-13   50.3  11.2    3.7e-13   49.8  11.2    1.3  1  ABC_membrane  ABC transporter transmembrane region
    8.1e-08   32.0   0.0    1.7e-06   27.6   0.0    1.8  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00016   22.1   0.9    0.00043   20.7   0.5    2.0  1  AAA_16        AAA ATPase domain
    0.00071   19.5   0.4       0.21   11.5   0.4    2.3  1  NTPase_1      NTPase
    0.00086   19.6   0.3      0.026   14.8   0.2    3.0  2  AAA_22        AAA domain
    0.00089   19.2   0.0     0.0018   18.2   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
     0.0035   17.9   0.0     0.0073   16.8   0.0    1.5  1  AAA_18        AAA domain
     0.0044   16.7   0.8     0.0093   15.7   0.1    1.9  2  AAA_29        P-loop containing region of AAA domain
      0.006   16.7   0.1      0.019   15.1   0.1    2.0  2  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.033   13.9   0.0    1.6  1  AAA_30        AAA domain
      0.019   14.9   0.1      0.054   13.5   0.0    1.8  2  AAA_5         AAA domain (dynein-related subfamily)
       0.02   15.3   1.3       0.63   10.5   0.3    3.0  2  AAA           ATPase family associated with various cellular 
      0.042   13.9   0.2       0.12   12.4   0.2    1.8  1  DUF87         Helicase HerA, central domain
      0.065   13.5   0.0        0.4   10.9   0.0    2.2  2  AAA_28        AAA domain
      0.078   12.8   1.1       0.25   11.1   0.2    2.0  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
       0.12   12.1   0.1       0.53   10.0   0.0    2.0  2  AAA_24        AAA domain
       0.19   11.9   0.7       0.57   10.3   0.1    2.1  1  AAA_33        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.1   1.1e-36   1.1e-33       2     137 .]     379     532 ..     378     532 .. 0.87

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.1e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esdee 84 
                 + ++l++k+gek++++G++GaGKStL++ll++l++ + G+il+dg+ + e + eslr++ig+++q+++l  ++ +ren                     
  EHT99099.1 379 NGLNLTIKPGEKIGLIGPSGAGKSTLVNLLLRLYDLNGGRILIDGQCIAEVTQESLRSQIGMITQDTSLLHRS-IRENllygrphaseeelqlaI---- 472
                 789********************************************************************99.**********95555555551.... PP

                 HHHHHHHSTTGG............TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglke............lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                      ++ + +e              d +v++++ +LSgGq+qr+a+ar+llk++++l++DE+t+
  EHT99099.1 473 -----RRARADEfipllsdsqgrtGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPVLIMDEATS 532
                 .....44444444444444445558899999999*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8  11.2   3.7e-16   3.7e-13       4     254 ..      43     301 ..      40     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.7e-16
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.HHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHCSTHHHHHHSC CS
  ABC_membrane   4 iillailagvlsplfplvlgrildtlldkgdpet.ealnvysllll..llglaqfilallqsyllnv.tgerlskrlrrklfkkilrqpmsffdtns 96 
                   ++++ +++ +++++  ++l+ri+d ++  ++p t ++ n   ll++  ++++++ ++  l+ +l +  +   +++ +r++  + +lrq+m ff++  
    EHT99099.1  43 LLVVGLVGALIEVALFSYLSRIIDLVNH-STPATlFHDNWPTLLWMgcVALILRPVFIALHDMLVHQsINPGMTSMIRWQHHNYVLRQSMNFFQNDF 138
                   678889999*****************97.88888944444444444004556778999999***9776999************************** PP

                   HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  97 vGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                   +G++ +r+    ++lrd+  + +  + + l+   ++l++     w+l++ l++ ++l+     ++ +++k  +   ++a++k+   + +  ++i t+
    EHT99099.1 139 AGRIAQRILQTGNSLRDSAVQLVDAIWHVLIYAATALVLFAEADWRLMIPLIIWIVLYSAALRYFVPRVKARSVVSSEARSKLMGTIVDGYTNIATI 235
                   ********************9988888888888888888888******************************************************* PP

                   HHTTTHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TS CS
  ABC_membrane 194 kafgree....yflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis.ge 254
                   k+f++ +    y +e +++++++ ++a+++++ ++  l++ + +l+ +   lalw+ ++  is g+
    EHT99099.1 236 KLFAHSDlerqYAREAIQEQTDKTQQANRMVTSMDLTLSTLNGVLIVATSGLALWLWSASLISvGA 301
                   ****986222266789999999********************************864444433354 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.7e-09   1.7e-06     135     212 ..     463     575 ..     383     580 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.7e-09
                 T.......................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE CS
                 x.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.......................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv 194
                                                          LSgG+++ +a+a +      k ap+ ++De  +aLD +  +++ e l++  +   +i 
  EHT99099.1 463 AseeelqlairraradefipllsdsqgrtgldahvgergvKLSGGQRQRIAIARV----LLKDAPVLIMDEATSALDSEVEAAIQESLESLMQGKTVIA 557
                 04444444444444444444444444444566666666668*******9999988....589************************************* PP

                 E-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N 195 islreemlekadklvgvt 212
                 i++r  +++k+d+lv + 
  EHT99099.1 558 IAHRLSTIAKMDRLVVLE 575
                 *************98765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.5   4.3e-07   0.00043      28     149 ..     392     535 ..     375     574 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.3e-07
      AAA_16  28 llsGesGvGKsslvrellralekdg.giflrgkcdql..esaipy.........salaqalareellrqlldeaesaeleawrekleeala........ 106
                  l+G+sG GKs+lv+ llr +  +g  i++ g+c     +++++          s l + + re ll     ++e+ ++ a r++     a        
  EHT99099.1 392 GLIGPSGAGKSTLVNLLLRLYDLNGgRILIDGQCIAEvtQESLRSqigmitqdtSLLHRSI-RENLLYGRPHASEEELQLAIRRAR----Adefiplls 485
                 589****************999997355599999888642222221111222212233333.333333333333333333333333....144446766 PP

      AAA_16 107 ..............avpelagaea......srllellkrllallsrderplvlvlDdlqwade 149
                                               +r + +++r l  l+  +   vl++D++  a +
  EHT99099.1 486 dsqgrtgldahvgeR--------GvklsggQRQRIAIARVL--LKD-A--PVLIMDEATSALD 535
                 666666555544332........022223344444444444..222.3..3666666664433 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.4   0.00021      0.21       2     155 ..     391     582 ..     390     592 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
                 EEEE--TTSSHHHHHHHHHHHH...G..GGEEEEEEEEE-------EEEEEET.T--EEEEEETT.................................. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg..vkvgGfyteevreggrrigFkivdlasgeegiLarve.................................. 64 
                 + + Gp+G GK+Tlv+ +l+l + +g  + ++G    ev+++  r+   +++ ++   +   r++                                  
  EHT99099.1 391 IGLIGPSGAGKSTLVNLLLRLYDLNGgrILIDGQCIAEVTQESLRSQIGMITQDTSLLHRSIRENllygrphaseeelqlairraradefipllsdsqg 489
                 678899999999999999998666652256799999999999988877777665544444444444555555555566666666666666666655544 PP

                 .---SSEETTEEE-HHHHHHHHHHHHHHHHHHH-EEEE---S.TTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE- CS
    NTPase_1  65 .akreprvgkyvvdvesfeelalealrkalseadviviDEiG.kmElkskkfkeaveevLksekpvlavihrrkdlalveeirerkdvkvfev 155
                  +   ++vg+  v++   ++  +++ r  l++a v+++DE    +  +++  +++  e L ++k v+a+ hr ++ a ++++   + ++++e+
  EHT99099.1 490 rTGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPVLIMDEATsALDSEVEAAIQESLESLMQGKTVIAIAHRLSTIAKMDRLVVLEHGQIVEI 582
                 334445666666666666555555555555666666666653146666666655555556666666666666666666666666666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.9   1.9e+03      54     103 ..     136     185 ..     125     214 .. 0.82
   2 !   14.8   0.2   2.6e-05     0.026      10      65 ..     393     443 ..     388     560 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
      AAA_22  54 kdllrellralglelkaerlsseellealeqalraravielliiDEaqh.l 103
                  d++ ++++ + + +++ r+s  +l++a+++ l  +a+ +l++  Ea+  l
  EHT99099.1 136 NDFAGRIAQRILQTGNSLRDSAVQLVDAIWHVLIYAAT-ALVLFAEADWrL 185
                 57777777777777777888999999999999999999.999999988755 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.6e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralg 65 
                 ++G+sG+GK+tl++ ll+ +d        ++ ++  ++ ++ ++++l++++  +++
  EHT99099.1 393 LIGPSGAGKSTLVNLLLRLYDLNG-----GRILIDGQCIAEVTQESLRSQIGMITQ 443
                 79*****************97543.....333334444444444444444444443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-06    0.0018      93     124 ..     381     413 ..     346     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpele 124
                  l+  +k  + + l+G+SG+GKStL+n ll   +
   EHT99099.1 381 LNLTIKPgEKIGLIGPSGAGKSTLVNLLLRLYD 413
                  5555555566779**************987655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.4e-06    0.0073       1      87 [.     391     480 ..     391     498 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.4e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss.....aleegknlvidghlaele 87 
                 I+l G++G+GK+tl + L ++     n + ++ ++++  ev++e l+++  + ++ +  l++ ++en       a+ee+  l i   +a+ +
  EHT99099.1 391 IGLIGPSGAGKSTLVNLLLRLY--DLNGGRILIDGQCIAEVTQESLRSQIGMITQDTSLLHRSIRENLLygrphASEEELQLAIRRARADEF 480
                 89****************9996..99*****************9333333333333344444444444466666666666666666665555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1        10   9.9e+03      38      47 ..     160     169 ..     160     173 .. 0.81
   2 !   15.7   0.1   9.3e-06    0.0093      14      39 ..     380     405 ..     375     411 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 10
      AAA_29  38 llDAiqalLv 47 
                 l+DAi  +L+
  EHT99099.1 160 LVDAIWHVLI 169
                 79***99886 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.3e-06
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTll 39 
                 g  ++i++ + + l+GpsG+GKSTl+
  EHT99099.1 380 GLNLTIKPGEKIGLIGPSGAGKSTLV 405
                 55677888888999***********8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.8   8.8e+03      46      82 ..     131     167 ..     107     176 .. 0.48
   2 !   15.1   0.1   1.9e-05     0.019       1      21 [.     390     410 ..     390     560 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.8
                 EEEEEEECGGCSSHHHHHH.HHHHHHHH..HHCTSEEEEE CS
    MMR_HSR1  46 keielvDtpGliegaseek.glgkafla..leeadlillv 82 
                  ++   D +G i +      + g+++++  ++ +d+i +v
  EHT99099.1 131 MNFFQNDFAGRIAQR---IlQTGNSLRDsaVQLVDAIWHV 167
                 455556777754311...1223333332112224555554 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.9e-05
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +++++G + +GKStL+n l++
  EHT99099.1 390 KIGLIGPSGAGKSTLVNLLLR 410
                 699****************96 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.3e-05     0.033      23     109 ..     393     543 ..     381     561 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
      AAA_30  23 ltGpAGtGKttalkalreaweaaggrvi..glAptgkaAkvLaeelgi...eastiakllkrlk................................... 81 
                 l Gp G+GK+t+++ l ++++ +ggr++  g    +   + L+ ++g+   ++s +++ +   +                                   
  EHT99099.1 393 LIGPSGAGKSTLVNLLLRLYDLNGGRILidGQCIAEVTQESLRSQIGMitqDTSLLHRSI---Renllygrphaseeelqlairraradefipllsdsq 488
                 78*********************9888845666677777779999998444444455555...345589888888888888888888888888888888 PP

      AAA_30  82 ..........................grarlepgtllivDEagmv.dtkqlaall 109
                                           +r+ l+++ +li DEa  + d++  aa+ 
  EHT99099.1 489 grtgldahvgergvklsggqrqriaiARVLLKDAPVLIMDEATSAlDSEVEAAIQ 543
                 8888888888888888888888888866777788888888886653555444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.4e-05     0.054       4      54 ..     393     447 ..     390     485 .. 0.84
   2 ?   -2.8   0.0       5.9   5.9e+03      64      89 ..     528     550 ..     509     567 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.4e-05
                 EE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B--....... CS
       AAA_5   4 LvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrreikngttsl 54 
                 L+Gp+G gKs+l+  l++++    +r +   q+ +  t+e l+ ++ +  ++tsl
  EHT99099.1 393 LIGPSGAGKSTLVNLLLRLYdlngGRILIDGQCIAEVTQESLRSQIGMITQDTSL 447
                 9*******************99755555556888888888888888877666554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.9
                 -G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5  64 regeilvlDEveraesevlnsLlsll 89 
                  e+  +++ Eve    ++++sL sl+
  EHT99099.1 528 DEATSALDSEVE---AAIQESLESLM 550
                 344444444444...44444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0         1     1e+03      77     109 ..     253     285 ..     241     297 .. 0.81
   2 ?   10.5   0.3   0.00063      0.63       3     114 ..     393     564 ..     391     575 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1
                 CCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEE CS
         AAA  77 seseeeervvnqLlteldgvkkkeskvivigat 109
                 +e++++++ +n ++t +d   +  + v++++++
  EHT99099.1 253 QEQTDKTQQANRMVTSMDLTLSTLNGVLIVATS 285
                 567888999999******999998878888776 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00063
                 EESSTTSSHHHHHHHHHHHHTHE..........EEEEETTTCSSS...................................................... CS
         AAA   3 lyGppGtGKTllakavakelgve..........fleisgsellsk...................................................... 37 
                 l+Gp G GK++l++ + +  + +          + e+   +l+s+                                                      
  EHT99099.1 393 LIGPSGAGKSTLVNLLLRLYDLNggrilidgqcIAEVTQESLRSQigmitqdtsllhrsirenllygrphaseeelqlairraradefipllsdsqgrt 491
                 89***************9974333333333444677777777766788888888888888888888888888888888888888888999999999999 PP

                 ....STTHHHHHH....HHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGG CS
         AAA  38 ....yvgesekki....relfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdk 114
                     +vge+  k+    r+ ++ a+    +  +l++DE+ +   s+      +e  +++ L + ++g +        i++++r ++
  EHT99099.1 492 gldaHVGERGVKLsggqRQRIAIARVLLkDAPVLIMDEATSALDSE------VEAAIQESLESLMQGKTV-------IAIAHRLST 564
                 9999555554444111133333344444445999999999998888......777777777777776644.......566665555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   0.00012      0.12      26      57 ..     391     421 ..     388     590 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatili 57 
                 ++ +g +G+GKS++v +Ll+ l+  +g++ili
  EHT99099.1 391 IGLIGPSGAGKSTLVNLLLR-LYDLNGGRILI 421
                 7899*************996.67355556655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.3   1.3e+03      30      53 ..     247     269 ..     234     298 .. 0.64
   2 ?   10.9   0.0    0.0004       0.4       1      36 [.     390     435 ..     390     481 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
      AAA_28  30 aareileeklakgedalpwvedll 53 
                 +are ++e+++k+++a ++v + +
  EHT99099.1 247 YAREAIQEQTDKTQQANRMV-TSM 269
                 66666666666666655544.333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0004
      AAA_28   1 kivitGgestGKTtlleaLaar..........gypvvpEaareile 36 
                 ki ++G++++GK+tl++ L +           + ++++E+  e l+
  EHT99099.1 390 KIGLIGPSGAGKSTLVNLLLRLydlnggriliDGQCIAEVTQESLR 435
                 5779*************99865455653333333455555444444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00025      0.25       3      26 ..     392     417 ..     391     456 .. 0.78
   2 ?   -0.2   0.0      0.68   6.8e+02     236     297 ..     503     560 ..     450     566 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
      AAA_21   3 vliGpNgsGKSnLLdaldllarl..d 26 
                 +liGp g+GKS+L  +l  l +l   
  EHT99099.1 392 GLIGPSGAGKSTLVNLLLRLYDLngG 417
                 69***************999876552 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.68
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +lS G+++ +a++  ll ++   ++l+ DE  + L+ ++ + + e l++l + g  vi+  H
  EHT99099.1 503 KLSGGQRQRIAIARVLLKDA---PVLIMDEATSALDSEVEAAIQESLESLMQ-GKTVIAIAH 560
                 46888888877777788777...9******9999999888888888888877.666666555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00053      0.53       4      22 ..     390     408 ..     388     447 .. 0.84
   2 ?   -1.3   0.0       1.5   1.5e+03     126     170 ..     524     568 ..     517     586 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00053
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 ki ++Gpsg+GK+tl++ l
  EHT99099.1 390 KIGLIGPSGAGKSTLVNLL 408
                 899************9877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
      AAA_24 126 ifiahektrkdedpegeakytrlepklgkktanelkeevDlvlra 170
                 ++i+ e t   +++ + a   +le+ ++ kt  ++ + + +++ +
  EHT99099.1 524 VLIMDEATSALDSEVEAAIQESLESLMQGKTVIAIAHRLSTIAKM 568
                 566666666666666665566666666666666666666666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00057      0.57       4      21 ..     393     410 ..     391     460 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 l+G++G+GKstl+  ll+
  EHT99099.1 393 LIGPSGAGKSTLVNLLLR 410
                 79**********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 4644.72
//
Query:       EHT99100.1  [L=374]
Description: hypothetical protein CKS_1017 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-146  487.5   1.3   2.9e-146  487.4   1.3    1.0  1  FemAB_like      Peptidogalycan biosysnthesis/recognition
    4.7e-13   49.5   6.7    6.6e-13   49.0   2.7    2.4  2  Acetyltransf_6  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.085   11.2   0.2       0.13   10.7   0.2    1.1  1  Rav1p_C         RAVE protein 1 C terminal


Domain annotation for each model (and alignments):
>> FemAB_like  Peptidogalycan biosysnthesis/recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.4   1.3  4.9e-150  2.9e-146       2     369 ..       9     371 ..       8     372 .. 0.97

  Alignments for each domain:
  == domain 1  score: 487.4 bits;  conditional E-value: 4.9e-150
  FemAB_like   2 iaeiaaeeWdalagpeknpflrhaflsaleesgsvsektGWqprhlvleeegklvaaaplYlkshsyGeyvfDwawadayeragleYYPKllvavPftP 100
                 +++i+a+eWdal   +++pflrhafl +le+sgsv ++ GWqp hlv +e+g+l+aa+p Y+kshs+GeyvfD+awada++rag++YYPK+l a+Pf+P
  EHT99100.1   9 LSDIPAAEWDALLP-DDQPFLRHAFLLSLEDSGSVRPERGWQPAHLVWREQGELCAALPGYQKSHSQGEYVFDHAWADACQRAGIAYYPKWLGAIPFSP 106
                 689*********97.99********************************************************************************** PP

  FemAB_like 101 vtgrrllvaeeedkeelaeallealkelaeeeklsslhvlfveeeeaell.eeagllerldvqfhwknegyasfddfLaalssrkRknirkerrkvaeq 198
                 vtg+r+l ++     ++a  ll+ l +++e++ ls++h++f++++  +ll e+ ++l rl++q+hw+n+gy++f+dfL++l srkRk++rker++va +
  EHT99100.1 107 VTGARVLGKS-----DAAIRLLSRLPDWLERQALSGAHINFTDSHANALLaEQPDWLARLGCQYHWHNRGYRDFQDFLDTLMSRKRKQLRKEREQVALN 200
                 *******993.....33568999********************997776626789******************************************** PP

  FemAB_like 199 gitievltgeeiteeewdafyefYqetyskkwgspyLtreffellaerlaekvllvlaeregeliagalnligedtlyGRyWGaleelpfLHFevcyyq 297
                 g ++++++g++++e++wd++y++Y++ty+ + ++pyLtr+ff+lla+rl+e++ +v+a+ ++++ a+a++l++++ lyGRyWG+l+e++ LHFe+c+yq
  EHT99100.1 201 GFEFDWYRGDQLREDQWDFVYTCYANTYAVRGQRPYLTRAFFSLLAARLPENIRVVIARLQQQPAAMAFYLKDGESLYGRYWGCLAEFNQLHFETCFYQ 299
                 *******************************99****************************************************************** PP

  FemAB_like 298 aiefaiaeglkrfeaGaqGehKlaRGflpvatySahliadpelreavaefleeeraaveeeieeleeelPfk 369
                 +++faiaegl+rf+aGaqGehKl RGf+p+ t+S+h++ +p+lr+av++fl++er+ v+  +ee++++lP++
  EHT99100.1 300 GMDFAIAEGLQRFDAGAQGEHKLVRGFEPQITHSWHYLCHPGLRAAVDDFLQQERQGVHLWAEEARDALPYR 371
                 ***********************************************************************9 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.054   3.2e+02      86     131 ..      52      95 ..      51      99 .. 0.74
   2 !   49.0   2.7   1.1e-16   6.6e-13       1     138 [.     184     319 ..     184     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.054
  Acetyltransf_6  86 alglrsgdrlyywlggydpelaklspgllllweliedaaee.Glrrf 131
                     +l+ r  + l++ l+gy  ++   s g++++ ++ +da+++ G++++
      EHT99100.1  52 HLVWREQGELCAALPGYQKSH---SQGEYVFDHAWADACQRaGIAYY 95 
                     556666666777777777555...559************97468776 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 1.1e-16
  Acetyltransf_6   1 skrRknlrrkrrkleelgevrfrvatdp....edleallelfraqwarrpdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrs 91 
                     s++Rk+lr++r + +   +++f + +++    ++ + ++  +++++a r  + +++ltraf+  l+a+l  ++++r++ +rl+ +p+A+a+ l++
      EHT99100.1 184 SRKRKQLRKEREQVALN-GFEFDWYRGDqlreDQWDFVYTCYANTYAVR--GQRPYLTRAFFSLLAARL--PENIRVVIARLQQQPAAMAFYLKD 273
                     57899999887776665.6899887666222255666777777777777..66799*************..************************ PP

  Acetyltransf_6  92 gdrlyywlggydpelaklspgllllweliedaaeeGlrrfdlgggde 138
                     g+ ly  + g  +e+++l+  + ++++ ++ a++eGl+rfd g+  e
      EHT99100.1 274 GESLYGRYWGCLAEFNQLHF-ETCFYQGMDFAIAEGLQRFDAGAQGE 319
                     ******************98.9*******************998655 PP

>> Rav1p_C  RAVE protein 1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   2.1e-05      0.13     463     507 ..     224     268 ..     211     272 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.1e-05
     Rav1p_C 463 lKNAfaLlskrRyeyAAaFFLLadslkdavnvllkqlkdlqLAia 507
                   N +a  ++r y   A F LLa +l + ++v++ +l+    A+a
  EHT99100.1 224 YANTYAVRGQRPYLTRAFFSLLAARLPENIRVVIARLQQQPAAMA 268
                 569**********************************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2781.79
//
Query:       EHT99101.1  [L=125]
Description: CrcB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-23   82.7   8.1    2.1e-23   82.4   8.1    1.1  1  CRCB      CrcB-like protein, Camphor Resistance (CrcB)


Domain annotation for each model (and alignments):
>> CRCB  CrcB-like protein, Camphor Resistance (CrcB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   8.1   1.2e-27   2.1e-23       2      94 ..       7     117 ..       6     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 1.2e-27
                 HHHHHHHHHHHHHHHH.HHHHBE.....BHHHHHHHHHHHHHHHHHHH..............HHTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHHHHHH CS
        CRCB   2 lvalggalGallRyllssllnkr.....plgtlavNvlGsfllgllla..............llttGflGglTTfStfvlelvslleegellaallyvl 81 
                 +v++gg +G++lR+++  ++n+      p gtl+vN++G f++g ++a              l++tG++GglTTfStf++el++ll++g++l+a+  +l
  EHT99101.1   7 AVIVGGSVGCVLRWWFGMRFNAFfpnlpP-GTLLVNLIGGFVIGGAMAwfiknpqldpawrlLIITGLCGGLTTFSTFTAELMTLLQSGKYLWAMSSAL 104
                 799*************8888888*99955.**************9999888888888888877************************************ PP

                 HHHHHHHHHHHHH CS
        CRCB  82 lsvvlgllavvlg 94 
                 ++v+++ll+ ++g
  EHT99101.1 105 VHVIGSLLMSFAG 117
                 ********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 936.08
//
Query:       EHT99102.1  [L=307]
Description: inosine-uridine preferring nucleoside hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-78  263.2   0.0    4.4e-78  262.9   0.0    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.9   0.0   2.4e-82   4.4e-78       2     304 ..       3     296 ..       2     297 .. 0.89

  Alignments for each domain:
  == domain 1  score: 262.9 bits;  conditional E-value: 2.4e-82
                   EEEEEE--SHHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSSS-SHH.HHTTTSSTSS-.--SSHC CS
  IU_nuc_hydro   2 kvilDtDpGiDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllrekaaae.ihGedGlgdvllpeperk 97 
                    vi+DtD+G+DDa+Al++a++  +  +llgittv+Gnv + qa++na+ ++++++  d +pvy+G+++pl+re+ a+   hGedGlgd+  + p   
    EHT99102.1   3 TVIFDTDIGVDDAFALAYAART-Q--HLLGITTVFGNVAVGQAVKNARLFCQKMA-ID-VPVYRGCARPLAREPSAPArLHGEDGLGDAFDN-PF-S 92 
                   69*****************995.7..9************************9998.55.**************555555********98533.32.3 PP

                   SCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SS...S--SSSSSS-HHHHHSHHHHHHHHHT.S-E.EEE CS
  IU_nuc_hydro  98 aesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaft...arGNvtpvaEfNifvDPeAAkiVles.apvkitl 190
                   +++  av+++id v   r++pg +tlva+GplTNiA a++++p++ ++vk+lviMGGaf+   + GNvtp++EfNi+ DP+AA+ Vl+s  p  i+l
    EHT99102.1  93 DDAPGAVQFIIDSV---RANPGVITLVAIGPLTNIASAINQAPDIIPLVKELVIMGGAFGtdgHSGNVTPFSEFNIWKDPHAADQVLSSaLP--IIL 184
                   345589********...999966****************************************************************87555..5** PP

                   E-HHHHTTSCHEECHHHHHHHHCSTCBHHHHHHHHHHHHHHHHHHHHHSSEEE-HHHHHHHHHH-GGGEEEEEEEEEEESSSSTTTTEEEEETSTT. CS
  IU_nuc_hydro 191 vpldvthkvqalltseeveelaalekglgafladllefyikaykeaegsdgaplhDplavavaldpelvttkrlavdveleggltrGrtvvdlrrl. 286
                   +pldvth  ++l++s+ev++l++       +l+++++ y ++  e+eg++g+ lhD l++ ++  pe +t  + +++v +++g ++G+tv +   l 
    EHT99102.1 185 IPLDVTH--KVLINSDEVDQLQQP------ILRAICRPYLAYSLEKEGFAGMALHDTLTISWLCLPEAFTLVESPLRV-ITEGIACGQTVRQISTLa 272
                   *******..88999******8664......8999*******999999***************99**999889999999.66789*****95444445 PP

                   ......TTS--EEEEEEE-HHHHH CS
  IU_nuc_hydro 287 ......kkaknvkvatevdverfl 304
                         ++ ++ ++a +vd++++ 
    EHT99102.1 273 srhnpfRDLPRQRIALGVDADAVR 296
                   56678999************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2659.89
//
Query:       EHT99103.1  [L=342]
Description: Zn-dependent NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-31  106.3   2.1    8.6e-31  106.0   1.1    1.7  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    3.6e-19   69.0   0.1    6.2e-19   68.3   0.1    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    6.4e-11   42.1   0.1    9.3e-11   41.6   0.1    1.2  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    1.5e-05   24.4   1.2    2.4e-05   23.8   1.2    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    6.5e-05   22.3   0.5     0.0027   17.0   0.2    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    7.7e-05   23.8   0.1    0.00018   22.5   0.1    1.7  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    0.00024   21.0   0.4    0.00054   19.9   0.4    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0011   18.4   0.0     0.0019   17.6   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0028   17.0   0.4      0.016   14.5   0.2    2.0  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
     0.0043   16.3   0.4     0.0071   15.6   0.4    1.2  1  FAD_binding_3    FAD binding domain
     0.0047   15.7   0.9     0.0067   15.2   0.9    1.2  1  HI0933_like      HI0933-like protein
     0.0099   15.5   0.1      0.041   13.5   0.1    1.9  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
  ------ inclusion threshold ------
       0.01   16.4   0.2      0.021   15.4   0.2    1.5  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.012   15.8   0.1      0.028   14.7   0.1    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.016   14.3   1.2      0.025   13.7   1.2    1.3  1  GIDA             Glucose inhibited division protein A
      0.019   14.3   7.2      0.025   13.9   4.5    2.0  2  FAD_oxidored     FAD dependent oxidoreductase
      0.022   15.2   0.1      0.041   14.3   0.1    1.6  1  NAD_binding_7    Putative NAD(P)-binding
      0.024   14.9   1.0      0.054   13.7   1.0    1.6  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.033   13.6   1.0      0.077   12.4   0.2    2.0  2  adh_short        short chain dehydrogenase
      0.035   13.7   0.6      0.068   12.7   0.6    1.5  1  DAO              FAD dependent oxidoreductase
      0.045   12.8   4.3      0.048   12.7   3.3    1.4  1  FAD_binding_2    FAD binding domain
      0.046   14.2   0.1      0.093   13.2   0.1    1.7  1  XdhC_C           XdhC Rossmann domain
      0.072   13.2   0.1       0.13   12.3   0.1    1.5  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.09   12.4   0.0       0.17   11.5   0.0    1.5  1  Glyco_trans_4_5  Glycosyl-transferase family 4
       0.11   11.8   1.0        0.2   10.9   1.0    1.4  1  Thi4             Thi4 family
       0.15   12.1   0.6       0.27   11.3   0.6    1.3  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   1.1   1.3e-33   8.6e-31       2     107 ..      28     132 ..      27     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 1.3e-33
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 +e+l+k+ +agiCg+D+h + g +++  ++p +lGHE++ ev+e+g +v++l+ G+rV++ p  sc eC+aC++g++n+Ce+ +++gv++dGgf++y++
  EHT99103.1  28 TEALLKIVSAGICGTDIHAWAG-NQPFFSYPRVLGHELCAEVVETGAAVHDLAAGQRVALIPYLSCFECDACRSGKTNCCENISVMGVHQDGGFSDYLC 125
                 689*******************.8*************************************************************************** PP

                 ECGGGEE CS
       ADH_N 101 vpekklv 107
                 vp+++l+
  EHT99103.1 126 VPAANLL 132
                 **99986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1   8.9e-22   6.2e-19       1     128 [.     173     299 ..     173     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 8.9e-22
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefd 98 
                 ++Gl a ++A+a Ga+v+++d s+ +++ + + lG   ++n+ +a +   ++  ++g+ +  v++++G++a+++aa++l+++gG++v+vG+ kg+ +++
  EHT99103.1 173 PIGLGAAAIAAANGAQVVVADTSDYRRQHVSQqLG-LCALNPADAAFITSLRNEFDGRLPLKVLDATGNPAAMNAAVSLIRHGGTVVYVGLHKGDLVIP 270
                 79****************************999**.6677774559*********************************************999999** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdll 128
                  + +++ke +i+Gs  ++ re+f ++ +l+
  EHT99103.1 271 DSEFHKKESTIMGSRNAT-REDFDRVRELM 299
                 ******************.99999887776 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   1.3e-13   9.3e-11       4     212 .]     142     340 ..     139     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.3e-13
  Glu_dehyd_C   4 gvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipeaseem 101
                  + L+EP +i++       a+r a+  + e++lv+GaG++GL a+a ++a  +g + v v ++ d+  ++ ++ ++lG    + +  +   i++  +e+
   EHT99103.1 142 AALIEPFAISAH------AVRRAAVAQGEQVLVVGAGPIGLGAAA-IAA-ANGAQ-VVVADTSDY--RRQHVSQQLGLCALNPA--DAAFITSLRNEF 226
                  567888887755......5677788899*************9955.554.46666.878888776..45556788888777653..334444445555 PP

  Glu_dehyd_C 102 d.....lvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdlde 194
                  d      v++aTG+++++ +a++ ++  G ++ +G+ ++  + +  +e+h++       ++Gs Na r+ f+  v++L a+ +   d ++ ++  ++ 
   EHT99103.1 227 DgrlplKVLDATGNPAAMNAAVSLIRHGGTVVYVGLHKGD-LVIPDSEFHKK----ESTIMGSRNATREDFDR-VRELMAAGTLRADMMLNRRFAFST 318
                  533332499***************************9987.66677777776....799************97.677778888889999999999999 PP

  Glu_dehyd_C 195 leeAfe....dddetiKtvvel 212
                  l+e fe    ++   iK v+++
   EHT99103.1 319 LAEHFEaqviNNRALIKGVIDF 340
                  9999986666677888888886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.2   3.4e-08   2.4e-05      27      71 ..     162     207 ..     141     258 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.4e-08
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TT CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lg 71 
                  +  +vlv+G+G  Gl A+a+a++ ga+V+v D++  r++++++ lg
   EHT99103.1 162 QGEQVLVVGAGPIGLGAAAIAAANGAQVVVADTSDYRRQHVSQqLG 207
                  4458********************************9999987544 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   3.9e-06    0.0027     135     175 ..     154     196 ..     129     213 .. 0.74
   2 ?    3.3   0.0     0.056        39       8      33 ..     239     265 ..     239     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.9e-06
                  HHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllp..krivvvGgGyiGvElAaalaklgkevtlveard 175
                  a++++ +   ++++vvG+G+iG+  Aa +a  g++v++ +  d
   EHT99103.1 154 AVRRAAVAqgEQVLVVGAGPIGLGAAAIAAANGAQVVVADTSD 196
                  4444444456899999999999999999999999998665554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.056
                  -SHHHHHHHHHHHHHTS-EEEEE.TTH CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Pyr_redox_2   8 gGpAGlaaaltlaqagakvtlve.leg 33 
                  g+pA+++aa  l ++g+ v+ v+  +g
   EHT99103.1 239 GNPAAMNAAVSLIRHGGTVVYVGlHKG 265
                  78*******************975333 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   2.7e-07   0.00018      25     117 ..     233     321 ..     176     326 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.7e-07
                   EEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH--..--EEEEEEGGGHHH CS
  ADH_zinc_N_2  25 vvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklr..pvvdrvfpleeaae 117
                    vld++g++a++ a+++++++gG++v +g +   +++l  +   + ++   + + s++a+ ++d ++++ +l+++G+lr  + ++r+f ++ +ae
    EHT99103.1 233 KVLDATGNPAAMNAAVSLIRHGGTVVYVGLH---KGDLVIPD-SEFHKKESTIMGSRNAT-RED-FDRVRELMAAGTLRadMMLNRRFAFSTLAE 321
                   59*****99999****999999***999953...34444434.33445555555556666.888.*************97778889999998887 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.4   7.8e-07   0.00054       1      41 [.     165     205 ..     165     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.8e-07
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalek 41 
                 +v v+GaG +G g aa++a++g +Vv+ d+s+ + +++ ++
  EHT99103.1 165 QVLVVGAGPIGLGAAAIAAANGAQVVVADTSDYRRQHVSQQ 205
                 588***************************99887777665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.8e-06    0.0019      33      73 ..     160     200 ..     146     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                     +g++v ++G+G IG  +a +++a g++v++ d+s  +++
    EHT99103.1 160 VAQGEQVLVVGAGPIGLGAAAIAAANGAQVVVADTSDYRRQ 200
                   56899*****************************9977655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   2.3e-05     0.016       1      27 [.     167     192 ..     146     219 .. 0.83
   2 ?   -0.1   0.0      0.62   4.3e+02     172     193 ..     239     260 ..     238     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylil 27 
                  +++GaGP+Gl+aa  +  +g  ++++ 
   EHT99103.1 167 LVVGAGPIGLGAAAIAAANGA-QVVVA 192
                  588999999988888888888.56664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.62
  Pyr_redox_3 172 gknSavDaAlelvrkgaeVtvv 193
                  g+  a+ aA+ l+r+g +V  v
   EHT99103.1 239 GNPAAMNAAVSLIRHGGTVVYV 260
                  56689**********9999765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4     1e-05    0.0071       3      33 ..     165     195 ..     164     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    +Vl+VGaGp Gl +a + +  G +vv+ +  
     EHT99103.1 165 QVLVVGAGPIGLGAAAIAAANGAQVVVADTS 195
                    7*************************98765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9   9.7e-06    0.0067       2      32 ..     165     195 ..     164     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.7e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  +v+v+G+G+ Gl aA+ aa++g++V++ +  
   EHT99103.1 165 QVLVVGAGPIGLGAAAIAAANGAQVVVADTS 195
                  79*************************9975 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2   1.4e+03     152     171 ..      65      84 ..      63      86 .. 0.88
   2 !   13.5   0.1   5.9e-05     0.041       2      35 ..     165     198 ..     164     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2
                     ------TTSHHHHHHS-S-E CS
  UDPG_MGDP_dh_N 152 nPEflregsavkdllnpdrv 171
                     + E ++ g av+dl+  +rv
      EHT99103.1  65 CAEVVETGAAVHDLAAGQRV 84 
                     679999********999998 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.9e-05
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideek 35 
                     ++ v+G+G +Gl  aa+ a+ g +v++ D ++ +
      EHT99103.1 165 QVLVVGAGPIGLGAAAIAAANGAQVVVADTSDYR 198
                     688**************************98765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.2     3e-05     0.021       2      33 ..     166     197 ..     165     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-05
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 v+vvG+G igl +A+++a+ g++V v + sd 
  EHT99103.1 166 VLVVGAGPIGLGAAAIAAANGAQVVVADTSDY 197
                 89************************998886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1     4e-05     0.028       1      44 [.     166     206 ..     166     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44 
                      vl++GaG +G ++a   a+++    +++vad s+ + +++ +++
       EHT99103.1 166 VLVVGAGPIGLGAAAIAAANGA---QVVVADTSDYRRQHVSQQL 206
                      89*****************996...8**********99998775 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.2   3.7e-05     0.025       1      43 [.     165     214 ..     165     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE.......ES-GGGTT--SSSSE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi.......thkldtiaelsCnps 43 
                 +v V+G+G  G+ AA+ aa  Ga+v+         +h  ++++ ++ np+
  EHT99103.1 165 QVLVVGAGPIGLGAAAIAAANGAQVVVAdtsdyrrQHVSQQLGLCALNPA 214
                 599***********************998888887777777777777775 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.5   3.6e-05     0.025       2      31 ..     166     195 ..     165     199 .. 0.92
   2 ?    0.6   0.0      0.41   2.8e+02       7      53 ..     239     278 ..     238     332 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.6e-05
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   v+VvG+gp G+ AA  Aa +Ga+v++ +++
    EHT99103.1 166 VLVVGAGPIGLGAAAIAAANGAQVVVADTS 195
                   9************************98876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.41
  FAD_oxidored   7 GgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee 53 
                   G+pa + AA++  r+G +v+ v       Gl  + lv +d +++++e
    EHT99103.1 239 GNPAAMNAAVSLIRHGGTVVYV-------GLHKGDLVIPDSEFHKKE 278
                   8899999999999999999977.......555566666666666555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   5.9e-05     0.041       6      50 ..     162     211 ..     158     305 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-05
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapev..keele......elvkl 50 
                    +g++vlvvG+G++++  +   +++ga+v+v +         +      +l+ l
     EHT99103.1 162 QGEQVLVVGAGPIGLGAAAIAAANGAQVVVADTSDyrR---QhvsqqlGLCAL 211
                    789*************************9977663221...123334433334 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   7.8e-05     0.054       1      29 [.     168     196 ..     168     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.8e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    +vGaG  Gl aA+ +a +g++v++ +++d
     EHT99103.1 168 VVGAGPIGLGAAAIAAANGAQVVVADTSD 196
                    8***********************99876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.6   1.8e+03      12      27 ..      60      75 ..      58      83 .. 0.86
   2 ?   12.4   0.2   0.00011     0.077       3      46 ..     166     208 ..     164     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.6
                HHHHHHHHHHHTT-EE CS
   adh_short 12 IGraiakelakeGakv 27
                +G++++ e+++ Ga v
  EHT99103.1 60 LGHELCAEVVETGAAV 75
                799**********998 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00011
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelke 46 
                 vlv+Ga+  IG+  a   a++Ga+vvv+d s+ + ++v ++l+ 
  EHT99103.1 166 VLVVGAG-PIGLGAAAIAAANGAQVVVADTSDYRRQHVSQQLGL 208
                 8999998.8*******************************9975 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   9.8e-05     0.068       2      30 ..     166     196 ..     165     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.8e-05
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 v+++G+G iGl++A  +a+ g  V++ + +d
  EHT99103.1 166 VLVVGAGPIGLGAAAIAAANGaqVVVADTSD 196
                 99*****************999999998774 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.3   6.9e-05     0.048       2      37 ..     166     201 ..     165     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.9e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37 
                    v+V+G+G  GL AA+ aa +G++v+v +  ++++ +
     EHT99103.1 166 VLVVGAGPIGLGAAAIAAANGAQVVVADTSDYRRQH 201
                    9**************************999997765 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   0.00013     0.093       1      64 [.     166     234 ..     166     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE.........-EEEE--S-HHHHHHHHHHH CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade.........tavvvlthdhklDaealeaa 64 
                 ++++Gag+++   a++aaa g +v+v+d+ +   +++++ +  +         +a+ + +   ++D ++  ++
  EHT99103.1 166 VLVVGAGPIGLGAAAIAAANGAQVVVADTSDY--RRQHVSQ--QlglcalnpaDAAFITSLRNEFDGRLPLKV 234
                 689**************************995..3444442..133555666655555555555554444444 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00019      0.13       9      57 ..     160     207 ..     152     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelk 57 
                     ++++vl++GaG ++  +a   +a+g++ vvva  +  r +++ ++l+
    EHT99103.1 160 VAQGEQVLVVGAGPIGLGAAAIAAANGAQ-VVVADTSDYRRQHVSQQLG 207
                   56789***********9999888888888.*****99999999999885 PP

>> Glyco_trans_4_5  Glycosyl-transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.17      11      80 ..     234     304 ..     230     328 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
  Glyco_trans_4_5  11 elsltGaPlvlmelatlLrsvgaevvvltlskkggll..keladrgikvleakaeelfklalkaDlvvlntv 80 
                       l+ tG P ++ ++a+ L   g +vv ++l+k++ ++  +e+++++ +++  + +   ++    +l+ ++t+
       EHT99103.1 234 VLDATGNPAAM-NAAVSLIRHGGTVVYVGLHKGDLVIpdSEFHKKESTIMGSRNATREDFDRVRELMAAGTL 304
                      6899****985.78888899999*********9954433466666666666655555555555555555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   0.00029       0.2      19      48 ..     165     193 ..     149     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvaile 48 
                  v++vGaG+ GL aa + a + + +v++ +
  EHT99103.1 165 QVLVVGAGPIGLGAAAIAAAN-GAQVVVAD 193
                 699************999999.99999865 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00039      0.27      20      53 ..     160     193 ..     151     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00039
                    --TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE- CS
  AdoHcyase_NAD  20 llaGkvavvaGyGdvGkGcaaslkglGarvivte 53 
                    +  G +++v+G G +G G+aa   + Ga+v+v++
     EHT99103.1 160 VAQGEQVLVVGAGPIGLGAAAIAAANGAQVVVAD 193
                    56799**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.34
# Mc/sec: 2979.16
//
Query:       EHT99104.1  [L=300]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-13   50.7   0.0    1.5e-07   30.9   0.0    2.5  2  GntR             Bacterial regulatory proteins, gntR family
    2.1e-11   44.3   7.7    2.1e-11   44.3   7.7    1.6  2  FCD              FCD domain
    1.5e-05   24.9   0.0    0.00047   20.1   0.0    2.7  3  HTH_Crp_2        Crp-like helix-turn-helix domain
    0.00022   21.1   0.0      0.025   14.5   0.0    2.7  2  HTH_11           HTH domain
    0.00048   19.8   0.0     0.0025   17.5   0.0    2.3  2  HTH_DeoR         DeoR-like helix-turn-helix domain
     0.0022   18.3   0.1       0.25   11.7   0.1    2.6  2  Rrf2             Transcriptional regulator
     0.0068   16.1   0.0       0.56    9.9   0.0    2.5  2  DUF4423          Domain of unknown function (DUF4423)
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.047   13.6   0.0    1.8  2  TrmB             Sugar-specific transcriptional regulator Trm
      0.035   13.9   0.1       0.34   10.7   0.1    2.3  2  HTH_IclR         IclR helix-turn-helix domain
      0.062   13.9   0.0        5.8    7.6   0.0    2.6  2  Phage_rep_O      Bacteriophage replication protein O
      0.081   13.3   0.0       0.31   11.4   0.0    2.0  1  Penicillinase_R  Penicillinase repressor
      0.086   12.8   0.0        0.2   11.6   0.0    1.7  1  HTH_36           Helix-turn-helix domain
       0.14   12.3   0.0        2.6    8.3   0.0    2.3  2  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
       0.15   12.3   0.0         12    6.1   0.0    2.8  2  AbiEi_4          Transcriptional regulator, AbiEi antitoxin


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.2e-10   1.5e-07       4      56 ..      10      60 ..       7      66 .. 0.88
   2 !   17.3   0.0   2.1e-06    0.0027       7      46 ..      93     131 ..      87     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.2e-10
                HHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR  4 qvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglver 56
                +v  +  e I +g+++  ++LP++  La++f VsrttvR +L+ L ++g++e 
  EHT99104.1 10 NVINHMLESIAQGHVQ--SPLPPQATLAEMFTVSRTTVRHVLSYLHERGVLEK 60
                6777788889999876..79******************************985 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHH CS
        GntR   7 erLredIlsgelrpGdkLPsereLaaefgVsrttvReALr 46 
                  r  ++I++ +l+pGd+  se +La++ +Vs   vRe L 
  EHT99104.1  93 KRFFDLINQRQLQPGDTF-SELQLAKQANVSPVAVREFLL 131
                 555679************.*****************9765 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.9   8.8e+03      67     111 ..      33      75 ..      31      80 .. 0.54
   2 !   44.3   7.7   1.7e-14   2.1e-11       2     124 ..     160     286 ..     159     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.9
         FCD  67 vlaelleelrarlrrlrrlalssperleeslaeHraildAirard 111
                 +lae+++  r+ +r++++    +++   e +++   i++A +a+d
  EHT99104.1  33 TLAEMFTVSRTTVRHVLSYL--HERGVLEKVKDSWVIVRAPEAQD 75 
                 56667777677666644443..44444444444455555555555 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 1.7e-14
         FCD   2 lyelRalLEpeaarlaa.rratdadlaeleellealeeaaa..egdleefaeadraFHralaeaagnpvlaelleelrarlrr.lrrlalssperlees 96 
                 l+elR++LE +a+ +     ++d+   ++++ll++ + + +  + ++ +fa++d ++H ++++aa+np++ + le ++  ++  + +      +r+  +
  EHT99104.1 160 LFELREMLETHALTRFLnLPMDDERWIQARDLLDRHRSMREtiASNYRHFAALDKQLHSLILSAANNPFFNQSLEIISVIFHShYQWDESDLKQRNIVA 258
                 89**************944566666666677776666655544466778*********************************75888888899****** PP

         FCD  97 laeHraildAirardadaAraamrrHle 124
                 l+eH ail A+  r    A  a+++Hl+
  EHT99104.1 259 LEEHMAILSALIGRRDVDALCALHSHLA 286
                 *********9987666666667899986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.6e-07   0.00047      23      63 ..      30      72 ..      11      73 .. 0.81
   2 ?    1.4   0.0      0.24   3.1e+02      22      54 ..     110     143 ..      95     152 .. 0.82
   3 ?   -2.7   0.0       4.7     6e+03      43      60 ..     249     266 ..     249     268 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.6e-07
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEE.EEES-HH CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglis.rgrr.irildle 63
                 q+ lA+m  ++r tv  +ls L ++g+++  +   ++++ +e
  EHT99104.1 30 PQATLAEMFTVSRTTVRHVLSYLHERGVLEkVKDSwVIVRAPE 72
                6899**************************5343348887776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.24
                 HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2  22 ltqeelAsmlGltretvsrilseLkreglis.rg 54 
                 ++  +lA   +++++ v   l ++ r +l++  +
  EHT99104.1 110 FSELQLAKQANVSPVAVREFLLHFMRYNLLEpVK 143
                 67789************99999999999988633 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.7
                 HHHHHTTSEE.ETEEEEES CS
   HTH_Crp_2  43 seLkreglis.rgrriril 60 
                 s+Lk+++++   ++ + il
  EHT99104.1 249 SDLKQRNIVAlEEH-MAIL 266
                 58999999993344.6665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05     0.025      19      43 ..      32      56 ..      25      63 .. 0.88
   2 ?    3.5   0.0     0.054        69      16      33 ..     110     127 ..      95     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelg 43
                ++LAe + vSr+tvr  +  L e g
  EHT99104.1 32 ATLAEMFTVSRTTVRHVLSYLHERG 56
                79*****************999988 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.054
      HTH_11  16 isgeeLAeeLnvSrrtvr 33 
                 +s  +LA++ nvS  +vr
  EHT99104.1 110 FSELQLAKQANVSPVAVR 127
                 55568***********98 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.9e-06    0.0025      19      47 ..      33      61 ..       8      68 .. 0.89
   2 ?   -2.2   0.0       2.7   3.5e+03      19      32 ..     114     127 ..     108     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
    HTH_DeoR 19 elvellgvSeaTiRRDLneLeeqglltRt 47
                 l+e + vS +T+R  L++L+e g+l+++
  EHT99104.1 33 TLAEMFTVSRTTVRHVLSYLHERGVLEKV 61
                599***********************997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
    HTH_DeoR  19 elvellgvSeaTiR 32 
                 +l+ + +vS+  +R
  EHT99104.1 114 QLAKQANVSPVAVR 127
                 6889999**99998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1    0.0002      0.25      12      58 ..      14      61 ..       2      64 .. 0.83
   2 ?    3.9   0.0     0.052        67      22      56 ..     107     140 ..      97     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                HHHHHHHHSSTCC-.B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 12 hallyLakeeeeep.vsseeiaerqnispsylekilakLrkaglvksv 58
                h+l  +a+ + ++p    +++ae++ +s++ ++++l+ L + g+++ v
  EHT99104.1 14 HMLESIAQGHVQSPlPPQATLAEMFTVSRTTVRHVLSYLHERGVLEKV 61
                66777777776666456789***********************99865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.052
                 TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2  22 eeepvsseeiaerqnispsylekilakLrkaglvk 56 
                 +++ +s  ++a++ n+sp+ ++  l +  + +l++
  EHT99104.1 107 GDT-FSELQLAKQANVSPVAVREFLLHFMRYNLLE 140
                 444.77789*************9998888877776 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00044      0.56      40      77 ..      32      66 ..       9      79 .. 0.89
   2 ?    3.5   0.0      0.04        51      38      82 ..     111     153 ..      96     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00044
     DUF4423 40 eelakrlrpkisaeevekalefLlklgllkkdedgkyr 77
                ++la++++  +s   v++ l++L + g+l+k +d  ++
  EHT99104.1 32 ATLAEMFT--VSRTTVRHVLSYLHERGVLEKVKD-SWV 66
                6899****..***********************9.776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.04
     DUF4423  38 dpeelakrlrpkisaeevekalefLlklgllkkdedgkyrqteks 82 
                 +  +lak+ +  +s   v++ l   ++ +ll+  + g ++  + s
  EHT99104.1 111 SELQLAKQAN--VSPVAVREFLLHFMRYNLLEPVKRGHWQMKKFS 153
                 4567888888..*************************99877655 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.7e-05     0.047      27      62 ..      33      68 ..      31      74 .. 0.87
   2 ?   -2.7   0.0       4.5   5.7e+03      27      56 ..     114     143 ..     110     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.7e-05
                HHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTEE CS
        TrmB 27 eiaeelgvprskvYevLrsLedkGlVerekgrpklY 62
                ++ae+  v+r++v  vL+ L ++G+ e++k +  + 
  EHT99104.1 33 TLAEMFTVSRTTVRHVLSYLHERGVLEKVKDSWVIV 68
                799*************************99875555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.5
                 HHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB  27 eiaeelgvprskvYevLrsLedkGlVerek 56 
                 ++a++++v+   v e L   ++  l e +k
  EHT99104.1 114 QLAKQANVSPVAVREFLLHFMRYNLLEPVK 143
                 578888888888888887777777777665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00027      0.34      22      50 ..      32      60 ..      18      62 .. 0.90
   2 ?    0.1   0.0      0.55   7.1e+02      23      49 ..     114     140 ..     105     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyveq 50
                + lA+ + ++++tv++ L+ L+e+G +e+
  EHT99104.1 32 ATLAEMFTVSRTTVRHVLSYLHERGVLEK 60
                6799***********************97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.55
                 HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  23 elArrtglpkStvhRlLqtLvelGyve 49 
                 +lA+++ +++ +v+ +L  +++  ++e
  EHT99104.1 114 QLAKQANVSPVAVREFLLHFMRYNLLE 140
                 6999*****999**9999999988887 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0045       5.8      53      83 ..      32      62 ..      23      70 .. 0.88
   2 ?    3.4   0.0     0.092   1.2e+02      48      80 ..     108     140 ..     105     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0045
  Phage_rep_O 53 sqlveltgisrtkvskalkeLirekviikeg 83
                   l+e+ ++srt v+++l +L +++v+ k +
   EHT99104.1 32 ATLAEMFTVSRTTVRHVLSYLHERGVLEKVK 62
                 5799**********************98765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.092
  Phage_rep_O  48 dwisnsqlveltgisrtkvskalkeLirekvii 80 
                  d +s+ ql++ +++s+ +v++ l  ++r + + 
   EHT99104.1 108 DTFSELQLAKQANVSPVAVREFLLHFMRYNLLE 140
                  789999**********************99986 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.31      26      56 ..      33      63 ..      30      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
                     T--GGG---HHHHHHHHHHHHHTTS-EEEEE CS
  Penicillinase_R 26 eleeekelaysTVktllrrLvkKgllsreke 56
                      l+e  +++++TV+ +l+ L+++g+l++ k+
       EHT99104.1 33 TLAEMFTVSRTTVRHVLSYLHERGVLEKVKD 63
                     67888899*******************9987 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016       0.2      12      53 ..      14      56 ..      11      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
      HTH_36 12 gslasfankngg.cfpsqetlakrlglsknTvsraikeLeqlG 53
                ++l s a++  +   p q+tla+ + +s+ Tv+  +  L + G
  EHT99104.1 14 HMLESIAQGHVQsPLPPQATLAEMFTVSRTTVRHVLSYLHERG 56
                68889999999999***********************999998 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.002       2.6      25      57 ..      31      63 ..      15      66 .. 0.90
   2 ?    1.4   0.0       0.3   3.8e+02      25      55 ..     112     142 ..     105     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
                    HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
  Fe_dep_repress 25 tkdlaerLnvspssVsemlkkLekdGyveyeky 57
                    ++ lae   vs  +V   l+ L++ G +e +k+
      EHT99104.1 31 QATLAEMFTVSRTTVRHVLSYLHERGVLEKVKD 63
                    578***********************9998876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.3
                     HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress  25 tkdlaerLnvspssVsemlkkLekdGyveye 55 
                       +la+  nvsp  V e l    +  ++e +
      EHT99104.1 112 ELQLAKQANVSPVAVREFLLHFMRYNLLEPV 142
                     6699**********99988766666666555 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0096        12      24      41 ..      40      61 ..      31      63 .. 0.85
   2 ?    3.0   0.0     0.092   1.2e+02      18      46 ..     114     147 ..     102     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0096
     AbiEi_4 24 ispsa....lrrLvrkGwLvrl 41
                +s+++    l++L+++G L+++
  EHT99104.1 40 VSRTTvrhvLSYLHERGVLEKV 61
                577777889***********98 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.092
     AbiEi_4  18 elea.aGispsa....lrrLvrkGwLvrlrrGvY 46 
                 +l++ a++sp a    l  + r  +L+ ++rG +
  EHT99104.1 114 QLAKqANVSPVAvrefLLHFMRYNLLEPVKRGHW 147
                 5688899999997777777777777888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2570.59
//
Query:       EHT99105.1  [L=450]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-55  185.9  41.3      1e-53  182.6  34.4    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0004   18.8  14.4      0.026   12.8   0.6    3.7  4  OATP      Organic Anion Transporter Polypeptide (OATP) family
  ------ inclusion threshold ------
       0.02   14.2  22.8      0.046   13.0   4.0    3.2  3  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6  34.4   1.7e-57     1e-53       1     353 []      46     407 ..      46     407 .. 0.83
   2 !   10.4   3.1   3.8e-05      0.23     124     176 ..     393     445 ..     389     449 .. 0.81

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 1.7e-57
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlg 98 
                 lllaa++++l+rs l++a   ++ e+ g+s++eig ll++++l++++a+lp+G+l dr G+r +l +g+++++l+ ++ +l +++++ ++++r+  G+g
  EHT99105.1  46 LLLAAIINYLDRSSLSVANM-TIREEMGLSATEIGVLLSAFSLAYGLAQLPAGALLDRKGPRIMLGVGMFIWSLFqAASGL-VHNFTQFVLVRIGLGMG 142
                 689****************9.******************************************************555555.59999************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++ ++p g+ +i dwf+ ++rg+ +g+++a++ +G  ++p++ ++++ +lgWr++f+ ++i+++++++    ++++ + +  +  ++ee          
  EHT99105.1 143 EAPMNPCGVKVINDWFNIKDRGMPMGMFNAASMIGLSVAPPILAAMMLLLGWRGMFVTIGILGIFLAI---GWYMTYRDRDNNTLSAEEIhylqagsva 238
                 ***************************************999999999******************99...6665555555555566666678****** PP

       MFS_1 189 kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.....lgr.rrrlllal 281
                 ++++p ++++ w+ l+k++ +w ++i++ ++    +++ ++lp ylq++++l+ l ++gll a+++l+ga+++ll g+++d      + + ++r + ++
  EHT99105.1 239 SRKAPISFRE-WRGLFKQRTMWGMMIGFSGINYTAWLYIAWLPGYLQSTYHLD-LKSTGLLAAIPFLFGAAGMLLNGYVVDAlvkrgWDAvKTRKVCIV 335
                 **********.***********9********999999****************.**************************9966655444545555555 PP

       MFS_1 282 lllllaalglallavt..ssavllll..vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 ++++l+a + a++  +  ++++++l+  +l++i f    + +s + l+  ++ +++++++ ++ n+a+ + ++++p
  EHT99105.1 336 SGMVLSAGFTAFVTRAteTTSAVTLIgmALFCIHF----AGTSCWGLIHANVTARMTASVGSIQNFASFIFASFAP 407
                 55555555555555444333333333334444444....4555555555555555588888888888888888876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 3.8e-05
       MFS_1 124 gllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeep 176
                 ++ + ++ + a ++p++ g+++ +  +++++ +i+a v+l++++ ++l+l+++p
  EHT99105.1 393 SIQNFASFIFASFAPVITGWILdTTKSFSLALMICACVTLMGAL-AYLVLVRKP 445
                 566777888889**********88888**************988.556665555 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.2     0.009        54       3      85 ..      43     125 ..      41     132 .. 0.83
   2 !   12.4   0.1   5.7e-06     0.034     133     183 ..     130     180 ..     120     192 .. 0.89
   3 !   12.8   0.6   4.4e-06     0.026     313     385 ..     275     349 ..     246     363 .. 0.70
   4 ?   -1.0   0.3     0.068   4.1e+02     500     524 ..     394     417 ..     356     419 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.009
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllal 85 
                 ++ll l+++++ +  + ++++  ti  + +l+ +++g+++s++ +++ l+ l  + + +r     ++g+g+++ +l+     l
  EHT99105.1  43 MLLLLLAAIINYLDRSSLSVANMTIREEMGLSATEIGVLLSAFSLAYGLAQLPAGALLDRKGPRIMLGVGMFIWSLFQAASGL 125
                 556666777777777888888899******************************9999998777889*****99998766555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.7e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 133 llfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpal 183
                 + f+l  + lG+G++p+ + G+  i D  + k+  + +g++ a++++G  +
  EHT99105.1 130 TQFVLVRIGLGMGEAPMNPCGVKVINDWFNIKDRGMPMGMFNAASMIGLSV 180
                 47899999****************************************876 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 4.4e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 313 fitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvk...klklsakklaklvlvvsllsllllllllf 385
                 +i++lp yl++ ++l  ++  ll+++   +++a+G+ll G++v    k  ++a k+ k+++v++++  +++ ++++
  EHT99105.1 275 YIAWLPGYLQSTYHLDLKSTGLLAAIP-FLFGAAGMLLNGYVVDalvKRGWDAVKTRKVCIVSGMVLSAGFTAFVT 349
                 899*************99888886555.556678*********933334455566666666666666666555544 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.068
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 500 lqlllirllgliPgPiifGaiiDst 524
                 +q +   +++   +P+i G+i+D+t
  EHT99105.1 394 IQNFASFIFAS-FAPVITGWILDTT 417
                 33333334444.6899999999987 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.0   7.7e-06     0.046      19     161 ..      67     208 ..      64     241 .. 0.78
   2 ?    3.1   5.4    0.0082        49      12      89 ..     275     363 ..     265     403 .. 0.75
   3 ?    6.2   2.2   0.00092       5.5     325     360 ..     401     436 ..     362     440 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.7e-06
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrer 117
                 +++e +ls++++g l +a  l Y +  l a   l ++  R++l +g++   l  +a++l+++f+ f+l+R+++G++ A +   g +++    + + r+ 
  EHT99105.1  67 IREEMGLSATEIGVLLSAFSLAYGLAQLPAGALLDRKGPRIMLGVGMFIWSLFQAASGLVHNFTQFVLVRIGLGMGEAPMNPCGVKVINDWFNIKDRGM 165
                 568999*****************999999999999999**************************************99987777777777777777777 PP

       MFS_4 118 vgallfaGvGlGiavs.gllvllllqlglsasslWlalavlsavl 161
                  ++++ a   +G  v+  +l++++l lg+ +    + +++l + l
  EHT99105.1 166 PMGMFNAASMIGLSVApPILAAMMLLLGWRGM--FVTIGILGIFL 208
                 77777777777765541455666666666655..55555555544 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0082
       MFS_4  12 ytpiLPalla.egqlslsqagllaaaNyl.........GYLvGallaafalsagaeRlr..llagllatvllllamaltesfaaflliRf 89 
                 y   LP  l+ + +l+l   gllaa+ +l         GY v al+   ++ a ++R +  + +++l++   ++   +te  +a++li +
  EHT99105.1 275 YIAWLPGYLQsTYHLDLKSTGLLAAIPFLfgaagmllnGYVVDALVK-RGWDAVKTRKVciVSGMVLSAGFTAFVTRATETTSAVTLIGM 363
                 555666644415577777777777776654445555559******76.99*******999666667777778888889999999998855 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.00092
       MFS_4 325 igQilGpllasllaeatgslalallvaaaalvlaal 360
                 i+   +p++++++ ++t s++lal++ a + +++al
  EHT99105.1 401 IFASFAPVITGWILDTTKSFSLALMICACVTLMGAL 436
                 455679*******************77766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 3760.19
//
Query:       EHT99106.1  [L=461]
Description: hypothetical protein CKS_1024 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3896.08
//
Query:       EHT99107.1  [L=278]
Description: fumarylacetoacetate hydrolase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-57  192.4   0.0      1e-56  192.1   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   0.0   5.6e-61     1e-56       1     218 []      76     278 .]      76     278 .] 0.95

  Alignments for each domain:
  == domain 1  score: 192.1 bits;  conditional E-value: 5.6e-61
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE- CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsa 96 
                    ki+c+g+nya+  +e  ++  +        +p++f++ a+sl+g+++p++ P  ++++dyE+ELav+igkp+++v ++++A d+iaGy  + D + 
     EHT99107.1  76 KIFCVGMNYADKRQEFAAT-LD--------APTLFIRFADSLTGHEQPLQKPLTTQEFDYEGELAVIIGKPAHRV-KAADALDVIAGYSCFMDATV 161
                    69*************8644.33........455******************************************.9******************* PP

                    SBGGG---.HHHHHH.TGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES....... CS
  FAA_hydrolase  97 Rdlqaeekaplgwfl.gksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaee 191
                    Rd+q      + wf+ gk+ ++   +Gpw++t+de++dp++l++++r+ng evq+ +t+ m++++a +i+++sa+ +L+pGd+i+tG+p gvg+++
     EHT99107.1 162 RDMQ------FTWFTaGKNWPQTGGFGPWMTTADEIPDPQQLSIKTRLNGREVQNDTTASMVHPVASIIEYISAFSPLSPGDVIITGSPGGVGKKR 251
                    **98......467777******************************************************************************** PP

                    S--EE--TT-EEEEEETTTEEEEEEE. CS
  FAA_hydrolase 192 eslkflkdgDeveveieglGelrnrVa 218
                    +++ f+  gD+veveie++G+lrn+Va
     EHT99107.1 252 TPPLFMFRGDVVEVEIEKIGCLRNPVA 278
                    *************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2372.29
//
Query:       EHT99108.1  [L=190]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-52  176.3  18.1    9.8e-52  174.8  11.2    2.0  2  Mntp       Putative manganese efflux pump
  ------ inclusion threshold ------
      0.017   15.1   0.2       0.11   12.5   0.0    2.1  2  HemN_C     HemN C-terminal domain
        0.4   10.8   2.7       0.52   10.4   0.0    2.4  2  DUF2953    Protein of unknown function (DUF2953)


Domain annotation for each model (and alignments):
>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.5    0.0013       7.8      74      94 ..       2      22 ..       1      29 [. 0.84
   2 !  174.8  11.2   1.6e-55   9.8e-52       4     152 .]      33     182 ..      30     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0013
        Mntp 74 slksllllaiatSiDAlavGl 94
                +++++l+la++ S+DA+a+ l
  EHT99108.1  2 TFIATLILAFGMSMDAFAAAL 22
                578899***********9755 PP

  == domain 2  score: 174.8 bits;  conditional E-value: 1.6e-55
        Mntp   4 lkealkialifGlfqalmpliGwllGkllselieavdhwiafllLlllGlkmivealkeeeeekkek.eelslksllllaiatSiDAlavGlsLallkv 101
                 lkea++++lifG+++al+pliGw+lG ++s++++a+dhwiaf+lL++lG++m++e+++++++e  e+ +++ +++l+++a+atS+DAlavG++La+l+v
  EHT99108.1  33 LKEAVRTGLIFGCIEALTPLIGWALGLAASQYVAAWDHWIAFFLLAFLGARMMMEGFRKTASEPCEApQSHGFMVLAATAVATSLDALAVGVGLAFLQV 131
                 799********************************************************9999888757888*************************** PP

        Mntp 102 nillavlliGlvtlvlsllGlllGrklgsllgkkaeilGGliLiliGlkil 152
                 ni++++l+iG +t+v++++G+l+Gr +g +lgk+ae+lGGl+Li+iG +il
  EHT99108.1 132 NIVITALTIGAATTVMATTGVLVGRFIGPVLGKWAEVLGGLVLIAIGSTIL 182
                 ************************************************997 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.9e-05      0.11      11      51 ..       3      42 ..       2      43 .. 0.91
   2 ?    0.0   0.0      0.15     9e+02       9      18 ..      83      92 ..      80      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
      HemN_C 11 iilgLRlreGldlaafeqrfgldleellaaaleklqeqGLL 51
                +i  L+l +G++++af+++ g+  + l ++ l+++ + GL+
  EHT99108.1  3 FIATLILAFGMSMDAFAAALGKG-ATLHRPGLKEAVRTGLI 42
                6889******************6.7777***********97 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.15
      HemN_C  9 EeiilgLRlr 18
                +++++g+R++
  EHT99108.1 83 RMMMEGFRKT 92
                89******87 PP

>> DUF2953  Protein of unknown function (DUF2953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.7e-05      0.52       4      25 ..      32      53 ..      30      58 .. 0.93
   2 ?   -1.0   0.8      0.32   1.9e+03      10      25 ..     135     150 ..     132     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.7e-05
     DUF2953  4 GleDaadTgilyGliwaikgll 25
                Gl++a  Tg+++G i a+++l+
  EHT99108.1 32 GLKEAVRTGLIFGCIEALTPLI 53
                999*****************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.32
     DUF2953  10 dTgilyGliwaikgll 25 
                 +T++  G++ ++++++
  EHT99108.1 135 ITALTIGAATTVMATT 150
                 5666667666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1388.67
//
Query:       EHT99109.1  [L=80]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-41  139.2   6.7    5.2e-41  139.0   6.7    1.0  1  DUF1158   Protein of unknown function (DUF1158)


Domain annotation for each model (and alignments):
>> DUF1158  Protein of unknown function (DUF1158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   6.7   2.9e-45   5.2e-41       1      78 [.       1      78 [.       1      79 [. 0.99

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 2.9e-45
     DUF1158  1 mkhpletllsaagilllallsalllpapalslalakklvttfhlldlnqlytlvfclwflllgaveylvirfvwrrwf 78
                m +p+e+l++++gilll++lsalllpapa+sla+a++l+++fhl+d  qlyt+vfclwflllga+e++virf+wrrwf
  EHT99109.1  1 MTNPFESLIIPGGILLLGFLSALLLPAPAFSLAVAQHLQQMFHLQDPIQLYTVVFCLWFLLLGALEFFVIRFIWRRWF 78
                789**************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 612.86
//
Query:       EHT99110.1  [L=537]
Description: malate:quinone oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.3e-233  773.1   0.0   1.1e-232  772.9   0.0    1.0  1  Mqo       Malate:quinone oxidoreductase (Mqo)


Domain annotation for each model (and alignments):
>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  772.9   0.0    6e-237  1.1e-232       2     489 .]      27     514 ..      26     514 .. 1.00

  Alignments for each domain:
  == domain 1  score: 772.9 bits;  conditional E-value: 6e-237
         Mqo   2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsalcElnYtpekedgsidiskAvkineqfevsrqfwaylvekgllk 100
                 +vdv+liGaG+msatlg++l++lep++sie++erl +vaeessn wnnaGtGH+al+ElnYtp+++d sidi+kA++ine+f++srqfway v+kg l+
  EHT99110.1  27 DVDVLLIGAGVMSATLGTWLQDLEPDWSIEMVERLPHVAEESSNGWNNAGTGHAALAELNYTPQRADSSIDIAKAIAINEAFQISRQFWAYHVQKGNLH 125
                 68************************************************************************************************* PP

         Mqo 101 dpkefinkvpHlsfvageenveflkkRyealkksplfegmeysedkeelkewlPlvmegRdakekvaatrieeGtdvnfgaltrqllkalekkkgvelk 199
                 +pk+fi+++pH+sfv+g++nv+fl+kR++al+ks+lf+gm ysed++++++w+Plvm+gR a++kvaat++++Gtdv+fg++trql+++lekk++++l+
  EHT99110.1 126 TPKSFIHSTPHMSFVWGDDNVNFLRKRFNALQKSTLFRGMAYSEDPQQIAKWIPLVMKGRPASQKVAATWTDMGTDVDFGEVTRQLIASLEKKASFRLR 224
                 *************************************************************************************************** PP

         Mqo 200 lkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqflvcknpevveqheakvYgkaavgaPPmsvpH 298
                 +++ev+d++r +dg+W+v++ +l++g++++++a  +fiGaGG+al+lLqk+g+pea+gy+gfPv+G+flv++np+vv+qh akvYgka+vgaPPmsvpH
  EHT99110.1 225 MSQEVRDITRLNDGRWQVTLVSLTDGSRRTLTAGKIFIGAGGAALPLLQKAGVPEANGYAGFPVGGSFLVTENPDVVKQHMAKVYGKASVGAPPMSVPH 323
                 *************************************************************************************************** PP

         Mqo 299 lDtRvidgkksllfGPfagfstkflkegslldllksvklsnllpllavglknldLvkYlieqvlkskedrlealreflpeakkedWelvvaGqRvqvik 397
                 +DtRv++gk++llfGPfa+fstkflk+gslld+++s++++nl+p+++vglk +dLvkYl++qvl+s++dr++alr ++p+ak+edW+lv+aGqRvq+ik
  EHT99110.1 324 VDTRVLNGKQVLLFGPFATFSTKFLKQGSLLDMFASLNSTNLMPMIKVGLKSFDLVKYLMDQVLQSDRDRMDALRAYVPQAKQEDWRLVTAGQRVQIIK 422
                 *************************************************************************************************** PP

         Mqo 398 kdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlekcfkeklkseewkeklkelipsygkkleedaelleevrketakvLkl 489
                 kde++g+vl++Gtevv+s+dgs++alLGasPGAsta++imle+l+k+++e+++s+ew++k+++++ps+g+kl+ d +l+e+v +et++vL+l
  EHT99110.1 423 KDEKEGAVLRLGTEVVSSEDGSISALLGASPGASTAAPIMLELLHKVCPEQMASPEWQNKIRAVVPSWGRKLNGDVALTEKVLAETSRVLQL 514
                 ******************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4133.25
//
Query:       EHT99111.1  [L=568]
Description: xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-180  599.1   0.0     3e-180  598.8   0.0    1.1  1  XFP_N      XFP N-terminal domain
    1.2e-27   97.2   0.0    1.6e-27   96.7   0.0    1.1  1  PhzC-PhzF  Phenazine biosynthesis-like protein


Domain annotation for each model (and alignments):
>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  598.8   0.0  3.4e-184    3e-180       3     356 ..       6     360 ..       4     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 598.8 bits;  conditional E-value: 3.4e-184
       XFP_N   3 seeelkkldkywraanylavgliylkdnpllreplkeedvkarllGhwGtvpGlsflyahlnriikkydqnmlyvvGPGhGgpalvaasylegsysely 101
                 + +el+ ld+ywraanyl+vg+iyl dnpllreplk+e++k rllGhwGt+pGl+f+yahlnrii+++d+n++yv+GPGhGgp++va+++legsyse+y
  EHT99111.1   6 TAHELTLLDRYWRAANYLSVGQIYLMDNPLLREPLKPEHIKPRLLGHWGTTPGLNFIYAHLNRIIRQRDLNLIYVCGPGHGGPGMVANTWLEGSYSEIY 104
                 5678999******************************************************************************************** PP

       XFP_N 102 peiskdeeGlkklfkqfsfPGGipshvaaetPGsiheGGelGyalshayGavldnPdlivacvvGdGeaetGPlatswhsnkflnPaedGavlPileln 200
                 p+i +d +G++klfkqfsfPGGipsh+a+etPGsi+eGGelGy+lsha+Gav+dnPdli+ c++GdGeaetGPla+swh +kflnP++dGavlPil+ln
  EHT99111.1 105 PHIRQDADGMQKLFKQFSFPGGIPSHAAPETPGSINEGGELGYSLSHAFGAVFDNPDLIAPCIIGDGEAETGPLASSWHGIKFLNPQRDGAVLPILHLN 203
                 *************************************************************************************************** PP

       XFP_N 201 GykisnptilarisdeelkklfeGlGyepafvededteslhkllaevldkaveeihdiqkears.neeasrPkwPmiilrtPkGwtgPkyvdGkkvegs 298
                 Gyki+nptil+r sd++l++lf+G+Gyep fv ++++e++h l+a++ld a++ei   q++ar+ + ++ +P+wPmiilr+PkGwtgPk vdGkkveg+
  EHT99111.1 204 GYKIANPTILGRASDDDLRQLFRGYGYEPLFVCGHEPEEMHPLMADTLDRAFSEIAGFQQAARQgSPMKAIPRWPMIILRSPKGWTGPKTVDGKKVEGF 302
                 ***************************************************************61557889**************************** PP

       XFP_N 299 frahqvPlalarentaklellkewlksykpeelfdedgslkeelkelaPkgekrlaan 356
                 +rahqvP+a+ ren+++ + l++wl+sy+p++lfde+g+lk+el++laP+ge+ +a +
  EHT99111.1 303 WRAHQVPVAACRENEDHCNILENWLRSYQPDDLFDEQGRLKPELQALAPQGELPFAGH 360
                 ***************************************************9887765 PP

>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   1.8e-31   1.6e-27      55     283 .]     346     562 ..     335     562 .. 0.87

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 1.8e-31
                 EEEE-SSSEES--HHHHHHHHHHHHHHCT-.S-SCEEEEEETTEEEEE.EEEEETCEECCEEEEE-SEEEEEE-HHHHHHHHHHCCTSGG-TTS-BEEE CS
   PhzC-PhzF  55 lRyFTPvaEvdlcGHatlasahalaekglv.asaetveletkaGilpvkslkekddgeellielkfPvikteevssedlallakllklaaqkalpiavk 152
                 l    P+ E++++GH+tl++ahal+e+g   ++  ++++++ +G + v+           ++ +++P ++   +  + ++ +++  +l+  +  p+ v+
  EHT99111.1 346 LQALAPQGELPFAGHPTLGTAHALLEAGWKtNTPGRMVQQCGVGNVVVT------IASDGTLAFAAPSATLTPYHDALISTALNSDALD--HSQPVTVA 436
                 5566899********************966578899***********95......45566789999*9999888766665555555555..799***** PP

                 ESSSEEEEEEBSTCCHHHH----H...HHHHHHCT-EEEEEEEETTTSSCCEEEEEEEE.GGGTEEEESS-HHHHHHHHHHHHHCC-SSSEEEEEEEE- CS
   PhzC-PhzF 153 stglekvivplsseeavaelspdl...aeeikkcpkkgvivtaaaeagskkdfhsRmFa.PklGivEDpvtGsAsgaLaaylseklnleesakikieqg 247
                   g +++++p+ s+eav  + pd+   ++ i +   +gv+++   + g++++++ R        + EDp+tGsA++ La+y++ +++    ++  ++qg
  EHT99111.1 437 DMGIRWLLIPMVSAEAVRTVIPDVndlERLITHASVDGVMPFGPLPSGEAEQYEVRGLLvEHGSLTEDPITGSANACLARYFAAQGKP---HNYRVRQG 532
                 ************************99999999************************988356669*******************9998...******** PP

                 GGGT--EEEEEEEE.E-TTCEEEEEEEE-EEEEEEE CS
   PhzC-PhzF 248 qalgrsgtlevevevkvdkekervkvtGkAvtvmeg 283
                  ++ r+g+++v  e+      e + + Gk vt++eg
  EHT99111.1 533 TQVRRQGRVNVAYEG------ETIWIGGKTVTIVEG 562
                 **********66654......6799****9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 4004.11
//
Query:       EHT99112.1  [L=252]
Description: short-chain alcohol dehydrogenase-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-51  175.4   0.1    1.6e-51  175.1   0.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.7e-44  150.2   0.0    5.9e-44  149.9   0.0    1.1  1  adh_short     short chain dehydrogenase
      1e-12   48.3   0.0    1.5e-12   47.8   0.0    1.2  1  KR            KR domain
     0.0073   15.8   0.1      0.026   14.0   0.1    1.9  2  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
        0.2   11.0   0.0       0.23   10.8   0.0    1.3  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.1   4.5e-55   1.6e-51       1     232 [.      10     249 ..      10     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 4.5e-55
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHH....HHH..SSEEEEEE-----EGCSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevv....ekf..gklDilvnnagiapklkgpfl 88 
                   Ga +g+G+ +A +la++G +++lt++n ++  ++ v+++++++g+++ l++DV d +q ++++++v+    +++  +++D+lvnnag+ +   +pf+
    EHT99112.1  10 GANRGLGKNAALKLAAKGRDIILTYRNHQNeaQDVVNAVERAGGRAIaLQLDVGDVSQFDRFISDVKntlqQHWqrETFDYLVNNAGHGHY--KPFA 104
                   899************************999845555666666666656**********99988776511115668889*************..**** PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg 184
                   et+++efd  ++v +++ + l++ +lp++ +gg+i+n+ss   + + p+   y+a K+a+e ltry A+elg+++iRvN  +pg+i+T+    ++++
    EHT99112.1 105 ETTEAEFDALMNVHFKGPYFLTQKLLPVISDGGRILNISSGLTRLTYPGSGTYAAMKGAMEVLTRYQAKELGERRIRVNILAPGAIETDFgGGRVRD 201
                   ******************************************************************************************6666888 PP

                   HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 185 fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                    +++ e ++a + lgr+g p+++++a++ ++s+e+ +it q + + gG
    EHT99112.1 202 DKAVNESIAALTALGRVGLPDDIGDAICAILSEETGWITAQRIEASGG 249
                   999****************************************99999 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   1.6e-47   5.9e-44       1     188 [.       4     196 ..       4     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 1.6e-47
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH......SSESEEEE---SS--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl......gkldvLvnNAGitgsgp 92 
                 k+vl+tGa +G+G++ a +la++G ++++ + +++++++ v++ ++++g +a+a+q+Dv d ++ +++++++++ l      ++ d LvnNAG  + +p
  EHT99112.1   4 KIVLITGANRGLGKNAALKLAAKGRDIILtYRNHQNEAQDVVNAVERAGGRAIALQLDVGDVSQFDRFISDVKNTLqqhwqrETFDYLVNNAGHGHYKP 102
                 79***************************8899999********************************9999887766678889*************** PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 f+e++e+e++++++v ++g++ lt+ +lp +  + +GrI n+sS  ++  ++g   Y+A K+a++ ltr  akel +++irvn++aPG+++Td+  
  EHT99112.1 103 FAETTEAEFDALMNVHFKGPYFLTQKLLPVI--SDGGRILNISSGLTRLTYPGSGTYAAMKGAMEVLTRYQAKELGERRIRVNILAPGAIETDFGG 196
                 ******************************5..59*********************************************************9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.3e-16   1.5e-12       3     165 ..       6     173 ..       5     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 4.3e-16
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS......S---EEEE-------- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee......ppikGvihaAgvlrdk 95 
                 +litG+  gLG+  a  la+kg r ++l+ R+   ++++++ ++++e+ g +  ++++Dv d ++  + ++++k++       ++    ++ Ag+ + k
  EHT99112.1   6 VLITGANRGLGKNAALKLAAKG-RDIILTYRN--HQNEAQDVVNAVERAGGRAIALQLDVGDVSQFDRFISDVKNTLqqhwqrETFDYLVNNAGHGHYK 101
                 79*******************9.6899*****..6788889*****************************999987644444567899*********** PP

                 -TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR  96 lleemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 +++e+t+++++++++  +kG   L + l +  ++   ++ +SS  + l  +g ++Yaa    ++ l +y+++
  EHT99112.1 102 PFAETTEAEFDALMNVHFKGPYFLTQKLLPviSDGGRILNISSGLTRLTYPGSGTYAAMKGAMEVLTRYQAK 173
                 ************************9999987888889***************************99999875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   7.3e-06     0.026       1      64 [.       6      76 ..       6     115 .. 0.81
   2 ?   -1.1   0.0      0.29     1e+03     139     161 ..     154     176 ..     140     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.3e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeq 64
                +l+tGa+  +G++ + +l++kg ++i   r+ +++++   + +          +ld+ d s+++r++++++
  EHT99112.1  6 VLITGANRGLGKNAALKLAAKGRDIILTYRNHQNEAQDVVNAVeraggraIALQLDVGDVSQFDRFISDVK 76
                79**********************998888855555555555589****9778888888888888887654 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.29
                 SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase 139 nspYaaaKlageklveayaaqyg 161
                 +  Yaa K a+e l+++ a++ g
  EHT99112.1 154 SGTYAAMKGAMEVLTRYQAKELG 176
                 56899999999999998877755 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.4e-05      0.23     105     201 ..     100     191 ..       2     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnld 201
                 + p+++ +++++  ++n ++  p+ ++q+llp +     +  +i+ ++ +++  l  p +++ a + +a++ l++  ++el++  i v  +  G ++
  EHT99112.1 100 YKPFAETTEAEFDALMNVHFKGPYFLTQKLLPVIS----DGGRILNISSGLT-RLTYPGSGTYAAMKGAMEVLTRYQAKELGERRIRVNILAPGAIE 191
                 568999999*************************9....5789998887765.79*******************************99888777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1750.53
//
Query:       EHT99113.1  [L=338]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-47  163.0  15.2    1.3e-47  162.6  15.2    1.1  1  Virul_fac_BrkB   Virulence factor BrkB
  ------ inclusion threshold ------
        3.2    7.7   9.3        2.7    7.9   3.2    2.6  3  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6  15.2   1.5e-51   1.3e-47       5     256 ..      61     320 ..      57     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 1.5e-51
  Virul_fac_BrkB   5 lsllAaalayytllSlfPlllvllavlgl.lglddelqeqlldllaevlpe.gaaevvedil.qrllnqaslgllglavllwsasggvsalrral 96 
                     +s++ aa++y+++lSl+P+l+v++a +g+ l+++++l  ++++ + + + + + a+++++++ ++++++a++g+ gl++ l+s+++++ +lr+a+
      EHT99113.1  61 GSQFGAAITYFSFLSLIPILMVSFAAVGFvLASNPDLLTDIINKIVSSISDpSLATTLKNTVnTAIQQRATVGITGLLLALYSGLNWMGNLREAI 155
                     7999*************************877899999999999999988778*********66888888************************* PP

  Virul_fac_BrkB  97 nk....iygv..eesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsell..llqllrwlvallllvlafallYrvlp 183
                     ++    ++++  ++++++++++++++l l++l+++l+++l l+++++s++  +++ l  gl+  e+l  +l ++   +++l ++l+f++++++lp
      EHT99113.1 156 RAqsrdVWERqpDDKEKIWKRYIRDFLSLTGLMLALVITLSLTSVAGSAQATIVNAL--GLDGIEWLrpALTIIATSISVLANYLLFLWIFWILP 248
                     99777788887666788*******************************999986444..455667777988888888****************** PP

  Virul_fac_BrkB 184 nvkvrlraalpGallaallwllvkilfslylsnfasynaiYG.slgaliilllWlylsalilLlGaelnaelqe 256
                     ++k+r +a+l G+llaa+++++ k++++l l + a  ++  G ++g++++l+ ++y++a ++L++a+++a+ ++
      EHT99113.1 249 RHKPRKKALLRGTLLAAIGFEVIKFVMTLTLPKLA--SSPSGaAFGSVLGLMAFFYFFARLTLFCAAWIATAKY 320
                     *********************************98..777787***************************9876 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.32   2.9e+03     113     151 ..      46      84 ..      32     112 .. 0.50
   2 ?    3.3   0.2    0.0077        69      44      91 ..     118     164 ..      75     167 .. 0.67
   3 ?    7.9   3.2   0.00031       2.7      44     141 ..     174     271 ..     160     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.32
  Abhydrolase_9_N 113 lralvrllarllgrvlprrvaavlgvlvvvvlvvllvdg 151
                      + +++r+l r  +r+  +  aa+  +  + ++ +l+v+ 
       EHT99113.1  46 VAHFIRALDRFNDRLGSQFGAAITYFSFLSLIPILMVSF 84 
                      444444444333333333333333333333333333333 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0077
  Abhydrolase_9_N  44 psrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaae 91 
                      ++++v+++  +  a+v++++ll+al+ +++w  +lr+++ a++++ +e
       EHT99113.1 118 LKNTVNTA-IQQRATVGITGLLLALYSGLNWMGNLREAIRAQSRDVWE 164
                      33333333.333467788899999***************999998876 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00031
  Abhydrolase_9_N  44 psrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfalllllgrllralvrllarllgrvlprrvaavlg 137
                      ++r +r  l l+ +++alv++l ++++a   Q ++ +++g+++++++ ++l+++++ + +++ +ll+  + +++ + + + + +l   + a++g
       EHT99113.1 174 WKRYIRDFLSLTGLMLALVITLSLTSVAGSAQATIVNALGLDGIEWLRPALTIIATSISVLANYLLFLWIFWILPRHKPRKKALLRGTLLAAIG 267
                      55566667777888899999999*****************************999999998888888888887777765555556555555555 PP

  Abhydrolase_9_N 138 vlvv 141
                      + v+
       EHT99113.1 268 FEVI 271
                      5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2484.26
//
Query:       EHT99114.1  [L=443]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-36  124.5  32.3    5.6e-25   88.1   6.8    2.2  2  Sugar_tr  Sugar (and other) transporter
      2e-30  105.9  58.5    7.1e-17   61.4  26.2    2.1  2  MFS_1     Major Facilitator Superfamily
     0.0013   17.4  17.9     0.0013   17.4  17.9    3.1  3  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   6.8   9.4e-29   5.6e-25       3     204 ..      25     234 ..      23     249 .. 0.87
   2 !   44.3  16.2   1.9e-15   1.1e-11     272     448 ..     271     443 .]     230     443 .] 0.74

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 9.4e-29
                 HHHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT. CS
    Sugar_tr   3 lvaalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk. 99 
                 ++a+l g  ++ +d++++++++ +   + +f +  ++     ++++s ++++i++v + iGs ++g +gdr+GRk +l+++ + + i++v++++ +++ 
  EHT99114.1  25 VIASLVGtAIEFFDFYIYATAAVIVFPHIFFPQGDAT--V--ATLQSLATFAIAFVARPIGSALFGHFGDRVGRKATLVASLLTMGISTVVIGLLPSYq 119
                 6777777688889999888887776655555555444..3..36899*************************************************996 PP

                 ....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 100 ....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilll 189
                      +  +l+++R+  G+g+G++ + + +++ E+Ap+k+R   +s+ ql+  +G+++a ++ l l+   +     ++gwr+++ l++v+ l+ l++++
  EHT99114.1 120 sigvLAPLLLALARFGQGLGLGGEWGGAALLATENAPAKKRALYGSFPQLGAPIGFFFANGTFLLLSWLLAdeqfmQWGWRVPFVLSAVLVLIGLYVRV 218
                 6655566667788*****************************************************7777779************************** PP

                 GS---HHHH.HHTT-H CS
    Sugar_tr 190 flPESPryl.vekgke 204
                  l ESP +  v+k+k+
  EHT99114.1 219 SLHESPVFAkVQKEKK 234
                 ********95555544 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 1.9e-15
                 HHHHHTTTHH.HHSS-THH.HHHHHHHHHHHH.HHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTT CS
    Sugar_tr 272 aimyysptif.enlglsks.llvtiivgvvnf.vatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgw 367
                 + m y++      lg+s   +l+ +++ v+ f v++ +a +l drfGRR+++++ ++ m+i f +l  +++l++ +    + ++++f++l + + +l++
  EHT99114.1 271 YSMSYGTAAApAGLGISRNsMLWMLMMAVIGFgVMVPIAGLLADRFGRRKTMIT-ITLMIIGFSFLF-PVMLGSGS----QALVMAFLLLGLSIMGLTF 363
                 3455555443144677776799999999999944566778*********88766.677889999997.89999988....89***************** PP

                 THHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHH.HHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCC CS
    Sugar_tr 368 gpvpwvlvsElfpqsvRskalaiavavnwlanf.lisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleei 448
                 gp+   l++Elfp++vR+++++++++++ +    +  ++ +++  ++g  y   ++ + +++ +++ ++   et ++tl+e+
  EHT99114.1 364 GPMG-ALLPELFPTEVRYTGASFSYNLSSILGAsVAPYIATWLNVHYG-LYAVGLYLASMAFLTLIALIACKETRHQTLYEV 443
                 ***9.566****************987665544155566666666666.888889999999******************985 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4  26.2   1.2e-20   7.1e-17       4     247 ..      31     283 ..      28     286 .. 0.69
   2 !   49.8  26.1     4e-17   2.4e-13      27     179 ..     284     437 ..     278     442 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.2e-20
       MFS_1   4 aaflsalarsilgpalplal......aedlgispseigl..lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa..ss....lw. 86 
                 ++++ +++++i+++a+ +        + d  +++++++    +++ +++  ++s ++G+++dr+Gr+ +l+++ll+++++ ++++l++  +s     + 
  EHT99114.1  31 GTAIEFFDFYIYATAAVIVFphiffpQGD--ATVATLQSlaTFAIAFVARPIGSALFGHFGDRVGRKATLVASLLTMGIStVVIGLLPsyQSigvlAPl 127
                 66677777777666665422233444444..4444444423455588899******************************6666666234224444444 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeep 176
                 ll+++r+ qGlg g+ + ++a l+++ +p ++r+++ ++ ++g+ +G+ ++ +   ll+ +l          Wr++f++ a++ l++     l+++++ 
  EHT99114.1 128 LLALARFGQGLGLGGEWGGAALLATENAPAKKRALYGSFPQLGAPIGFFFANGTFLLLS-WLLadeqfmqwgWRVPFVLSAVLVLIG-----LYVRVSL 220
                 6*************************************************977777666.222567888888**************9.....5666666 PP

       MFS_1 177 perkrkspkeeekgtgpaplvpawkallkdpvlwillialllfff..gfsglltllplylqevlglsglllag 247
                 +e++ ++++++ek++++ p+++    ll++     l +++l++f+  ++++l++ +++y  + +g + +  ag
  EHT99114.1 221 HESPVFAKVQKEKKQVRVPIAS----LLSKH----LTATILGTFImlATYTLFYIMTVY-SMSYGTA-AAPAG 283
                 6666666666633336666666....55555....444444443200444466666666.6666655.44444 PP

  == domain 2  score: 49.8 bits;  conditional E-value: 4e-17
       MFS_1  27 lgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa.sslwlllvlrvlqGlga.galfpagaaliadwfpk.eergr 121
                 lgis  ++ ++l +  +g++v+++++G l+drfGrr+ ++ ++l + ++++l++++  s++ +l+ + +l Gl   g+ f  ++al+ ++fp   + + 
  EHT99114.1 284 LGISRNSMLWMLMMAVIGFGVMVPIAGLLADRFGRRKtMITITLMIIGFSFLFPVMLgSGSQALVMAFLLLGLSImGLTFGPMGALLPELFPTeVRYTG 382
                 899**********************************555555555555577777645999999999999999999*****************778888 PP

       MFS_1 122 aigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 a   +++++ lGa ++p ++ +l  ++g  av + la +++l ++   +l+ ++++++
  EHT99114.1 383 ASFSYNLSSILGASVAPYIATWLNVHYGLYAVGLYLASMAFLTLI---ALIACKETRH 437
                 8888999*************************9999999999988...6666666555 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   3.5   0.00038       2.3     258     323 ..      60     129 ..      20     141 .. 0.71
   2 !   17.4  17.9   2.2e-07    0.0013     164     340 ..     192     375 ..     161     382 .. 0.67
   3 !    2.1   1.0    0.0098        58     265     308 ..     384     428 ..     375     441 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00038
       MFS_2 258 gsaasvfllvvtisal....lgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllvi 323
                 ++ a++++l++++ a+    +g++l+  +  r g+k+t ++++l + + +v++ ll+ ++ + +l+ l++
  EHT99114.1  60 ATVATLQSLATFAIAFvarpIGSALFGHFGDRVGRKATLVASLLTMGISTVVIGLLPSYQSIGVLAPLLL 129
                 44555555555555555566******************************99999966666655554444 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.2e-07
       MFS_2 164 lkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyv.......l 255
                  +  + g+++  ++ a+L+l+g ++ v+   +   +    ++ qkek +++  + +++++    ++l +f++ a+ +++ +  ++Y + y        l
  EHT99114.1 192 EQFMQWGWRVPFVLSAVLVLIGLYVRVSLHESP-VF----AKVQKEKKQVRVPIASLLSKHLTATILGTFIMLAT-YTLFYIMTVYSMSYGtaaapagL 284
                 445566899999999999999999886655544.44....68888888888888888888666666655554444.66666667777776422333348 PP

       MFS_2 256 g.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgallti.vllvlvlll....qpsnlllflvllviagfgvgvaallpwsmla 340
                 g +++ + ++l++++i+  +++p++  la r+g+++t++  +l+ i + ++++++l    q+  ++++l+ l i g+++g ++ l++ +++
  EHT99114.1 285 GiSRNSMLWMLMMAVIGFGVMVPIAGLLADRFGRRKTMITITLMIIgFSFLFPVMLgsgsQALVMAFLLLGLSIMGLTFGPMGALLPELFP 375
                 8899999999999999999**************9977776666665155555666677544444445555555666666666666655555 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.0098
       MFS_2 265 llvvtisallgiplwqplakrlgkk.ntyllgalltivllvlvll 308
                 ++   +s++lg+ +++++a++l+ +  +y++g+ l+ + ++ +++
  EHT99114.1 384 SFSYNLSSILGASVAPYIATWLNVHyGLYAVGLYLASMAFLTLIA 428
                 444456666666666666666664435555554433332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3128.27
//
Query:       EHT99115.1  [L=60]
Description: hypothetical protein CKS_1038 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-05   22.6   0.0    5.6e-05   22.6   0.0    1.0  1  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.1e-09   5.6e-05     157     208 ..       3      57 ..       1      58 [. 0.90

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.1e-09
                     GGGHHCCCHTTTEEEEEESST....TCEEEEEEEEETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 157 rsavrdeladgrlvalplpep....plprelylvyrkgrelspavrafidflreal 208
                     r++++ +l dg l+ ++lp++    + p++l++++ ++r l+ ++r fid + ++l
      EHT99115.1   3 RFIANGYLLDGPLR-RVLPDWhsenTTPMTLWAITLPNRLLPLKTRVFIDDFMAWL 57 
                     77888999******.*********7777**********************888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 486.15
//
Query:       EHT99116.1  [L=491]
Description: NAD(P)-binding ketol-acid reductoisomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-58  195.3   0.9    6.6e-58  194.9   0.3    1.5  2  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
    7.1e-52  175.5   0.3    2.9e-25   89.2   0.0    2.3  2  IlvC             Acetohydroxy acid isomeroreductase, catalyti
    0.00044   19.7   0.0    0.00081   18.8   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0095   16.0   0.1      0.019   15.0   0.1    1.5  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.022   14.4   0.1    1.5  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.015   15.7   0.1      0.054   13.9   0.0    1.9  2  NAD_binding_7    Putative NAD(P)-binding
      0.086   13.0   0.0       0.49   10.6   0.0    2.1  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.39   11.0   0.0       0.39   11.0   0.0    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.9   0.3     3e-61   6.6e-58       2     165 .]      35     204 ..      34     204 .. 0.97
   2 ?   -3.7   0.0       3.3   7.5e+03     116     137 ..     342     362 ..     337     370 .. 0.62

  Alignments for each domain:
  == domain 1  score: 194.9 bits;  conditional E-value: 3e-61
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-.....HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESS CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregs.....ksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafah 95 
                 lkgkki+++G+G+qG +q+ln+rdsgldv ++lr+++     +s++kA+++gf+v t++e++ +ad+v++l+PD+++++v+ ++++p +k+g+al ++h
  EHT99116.1  35 LKGKKIVIVGCGAQGLNQGLNMRDSGLDVSYALRAEAiaekrASYRKATDNGFKVGTYEELIPQADLVVNLTPDKQHSAVV-QAVQPLMKDGAALGYSH 132
                 89*******************************9987777657**************************************.99*************** PP

                 SHHHHTTSS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEE..E-SSS-HHHHHHHHHHHTTHHHH- CS
        IlvN  96 GfnihfglikppkdvdvvlvAPkgpGhlvreeyeegkGvpaliave..qdasgkakelalayakgiGatraG 165
                 Gfni+    +++kd++vv+vAPk+pG++vreey++g+Gvp+liav+  +d +g+++++a+a+a+++G++raG
  EHT99116.1 133 GFNIVEVGETIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHpeNDPKGEGMAIAKAWASATGGDRAG 204
                 *********************************************988999********************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
                 EESS-SHHHHHHHHTT----EE CS
        IlvN 116 APkgpGhlvreeyeegkGvpal 137
                 AP+  G++  +ey + kGv ++
  EHT99116.1 342 APQFDGKIEEQEYYD-KGVVMV 362
                 777788877777654.344333 PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.3e-28   2.9e-25       1     134 [.     210     342 ..     210     345 .. 0.93
   2 !   84.4   0.1   4.1e-27   9.2e-24      13     143 ..     358     482 ..     350     483 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.3e-28
                 HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHH..HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHH CS
        IlvC   1 FkeEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfeclhel..klivdliyegGiakmresiSdtaeygdltagprviteevkeemkeile 97 
                 F +E+++Dl+gEq++LcG++++    +F++lv++G++  +Ay e l     + i++ ++ gGi+ m++++S+ a+ +++   +++ ++ + + ++++++
  EHT99116.1 210 FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGHD--AAYTEKLIQFgwETITESLKFGGITLMMDRLSNPAKLRAYALSEQL-KTIMAPLFQKHMD 305
                 789********************************97..56777664433489********************************.************* PP

                 HHHTTHHHHHHHHHHHTTSHHHHHHHHHHHTSHHHHH CS
        IlvC  98 eiqsGefakevieenkagrpelkklrkeeaeheiekv 134
                 +i sG+f+  +++++++++++l ++r+e+ ++ +e++
  EHT99116.1 306 DIISGDFSAGMMADWANDDKKLLTWREETGKTAFETA 342
                 *******************************999976 PP

  == domain 2  score: 84.4 bits;  conditional E-value: 4.1e-27
                 HHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHTTHHHHHHHHH CS
        IlvC  13 qavLcGgvselveagFetlveaGyspelAyfeclhelklivdliyegGiakmresiSdtaeygdltagprviteevkeemkeileeiqsGefakeviee 111
                  +v++++v++ ve +Fet+v+aG+ +e Ay+e+lhel li+++i+++ +++m+  iSdtaeyg++    +++     + +ke++++ q G+  k  i+ 
  EHT99116.1 358 GVVMVAMVKAGVELAFETMVDAGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSFAAV-----PLLKEFMDSLQPGDLGK-AIDG 450
                 5799**************************************************************998885.....**************985.6888 PP

                 HHTTSHHHHHHHHHHHTSHHHHHHHHHHHCHT CS
        IlvC 112 nkagrpelkklrkeeaeheiekvgkklralmp 143
                 ++ ++++l++++++ ++h+ie+vg+klr +m+
  EHT99116.1 451 TQVDNAQLRDVNEAIRQHPIEQVGRKLRGYMT 482
                 889*************************9985 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.6e-07   0.00081      33     122 ..      34     127 ..       8     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.6e-07
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH......CHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEE CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee......eeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgai 122
                    l+gk++ i+G+G+ G +    ++  g++v +  r +   e      ++ ++g+++ + eel+ ++D v++ +p  ++ +  + ++   +mk+ga 
    EHT99116.1  34 FLKGKKIVIVGCGAQGLNQGLNMRDSGLDVSYALRAEAIAEkrasyrKATDNGFKVGTYEELIPQADLVVNLTP--DKQHSAVVQAVQPLMKDGAA 127
                   589***************************9998887644445667789999*******************999..55555666666677777765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   8.5e-06     0.019      20     133 ..      34     154 ..      25     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.5e-06
                    --TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE.-S-HHHHH.....HHHCTT-EE--HHHCTTT-SEEEE-SSSSS..SB-HHHHCCS-TTEEEE CS
  AdoHcyase_NAD  20 llaGkvavvaGyGdvGkGcaaslkglGarvivt.evdPical.....qaameGfevvtleevvkkadivvtttGnkd..iitlehlkkmkddaivc 107
                    +l Gk++v++G G  G      ++  G  v  +   + i+       +a+ +Gf+v t ee++ +ad+vv  t  k+   + +     mkd a ++
     EHT99116.1  34 FLKGKKIVIVGCGAQGLNQGLNMRDSGLDVSYAlRAEAIAEKrasyrKATDNGFKVGTYEELIPQADLVVNLTPDKQhsAVVQAVQPLMKDGAALG 129
                    689************************9996432566665441111256789******************99987652245555566788888887 PP

                    E-SSTTTTBTHHHHHTTT-EEEEEET CS
  AdoHcyase_NAD 108 niGhfdseidvaaleanalkkeevkp 133
                       h  + ++v +  +++++++ v p
     EHT99116.1 130 Y-SHGFNIVEVGETIRKDITVVMVAP 154
                    5.444455666666666666666665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   9.6e-06     0.022       1      96 [.      40     126 ..      40     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.6e-06
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpnt 96 
                 i+i+G+Ga+G   + ++   g dv   lr +   a+ ++  + ++ +    + +++ + +e    + ++dlv+  ++  q  +++++++pl+++ +
  EHT99116.1  40 IVIVGCGAQGLNQGLNMRDSGLDVSYALRAE---AIAEKRASYRKAT---DNGFKVGTYEE---LIPQADLVVNLTPDKQHSAVVQAVQPLMKDGA 126
                 89***************99**********88...5555555555555...22244444444...67899********************9998765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-05     0.054       5      77 ..      35     114 ..      32     121 .. 0.74
   2 ?   -3.7   0.0       7.7   1.7e+04      30      40 ..     146     156 ..     142     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtv..vapevkeeleelvklaeee.....lekdlegadlviaatddrelner 77 
                    lkgkk+++vG G  +++   ++ ++g +v     a++++e+  +  k++++      +e+ + +adlv+  t+d++ ++ 
     EHT99116.1  35 LKGKKIVIVGCGAQGLNQGLNMRDSGLDVSYalRAEAIAEKRASYRKATDNGfkvgtYEELIPQADLVVNLTPDKQHSAV 114
                    799************************9976224455333333444444544333335899*************988765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.7
  NAD_binding_7  30 gakvtvvapev 40 
                    + +v++vap+ 
     EHT99116.1 146 DITVVMVAPKC 156
                    55677788884 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022      0.49       1      85 [.      39     127 ..      39     135 .. 0.86
   2 ?   -0.8   0.0      0.69   1.5e+03      74     112 ..     433     473 ..     427     476 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-E CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasldvvitmvkagkavdeviegllealkkgdi 85 
                    ki ++G G  G n  ln+ ++g +v+   r ++ +e+ ++ +        + + eel+ ++d+v+ + ++++   +v++ + + +k g+ 
     EHT99116.1  39 KIVIVGCGAQGLNQGLNMRDSGLDVSYALRAEAIAEKRASYRkatdnGFKVGTYEELIPQADLVVNLTPDKQ-HSAVVQAVQPLMKDGAA 127
                    5789**********************9999998888888776777777788999**********98888755.57899999999998875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.69
                    HSHCCC--TT-E..EEE-S---HHHHHHHHHHHHHTT-EEE CS
  NAD_binding_2  74 egllealkkgdi..lidgstsspedtrelakelkekglkfl 112
                    ++ +++l++gd+   idg+ ++ ++ r+++++++++ ++ +
     EHT99116.1 433 KEFMDSLQPGDLgkAIDGTQVDNAQLRDVNEAIRQHPIEQV 473
                    556777888887557*****************999988776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   1.1         8   1.8e+04       1      10 [.      40      49 ..      40      50 .. 0.88
   2 ?   11.0   0.0   0.00018      0.39      58      88 ..      91     117 ..      60     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 8
                     EEEE--SHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvG 10
                     ++i+G+G+ G
       EHT99116.1 40 IVIVGCGAQG 49
                     89*****877 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00018
                      THHHHHHHHHTTSSEEEE-SSGGGHHHHHHH CS
  Sacchrp_dh_NADP  58 nyeavLaallkegdlvvnlsppissldvlka 88 
                            ++l+ ++dlvvnl+p+ ++ +v++a
       EHT99116.1  91 T----YEELIPQADLVVNLTPDKQHSAVVQA 117
                      3....456999*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3935.45
//
Query:       EHT99117.1  [L=293]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-36  124.1   3.6    6.9e-36  123.6   3.6    1.2  1  LysR_substrate  LysR substrate binding domain
    1.4e-20   73.0   0.4    2.8e-20   72.0   0.4    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    2.9e-05   23.8   0.3    6.5e-05   22.7   0.3    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.046   13.3   0.0    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.017   15.0   0.0      0.031   14.2   0.0    1.4  1  MarR            MarR family
      0.024   14.4   0.0      0.043   13.5   0.0    1.3  1  SBP_bac_11      Bacterial extracellular solute-binding protei
      0.025   14.4   0.2      0.083   12.8   0.0    1.9  2  MarR_2          MarR family
       0.08   12.8   0.0       0.21   11.5   0.0    1.7  1  HTH_23          Homeodomain-like domain
      0.087   12.6   0.0       0.16   11.7   0.0    1.4  1  HTH_38          Helix-turn-helix domain
       0.11   12.7   0.0       0.25   11.6   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.12   12.5   0.0       0.45   10.7   0.0    2.0  2  HTH_28          Helix-turn-helix domain
       0.47   10.6   3.5        1.4    9.0   0.1    2.9  3  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   3.6   4.6e-39   6.9e-36       4     204 ..      89     293 .]      86     293 .] 0.92

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 4.6e-39
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGG..SSS CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLar..gep 95 
                     l+g+Lr+ ++ t+a ++lpp+l rfra++P+ve+ l++gd ++ ++++++g +Dlai+++p+  +++++++ L+  pl l+a++  p     ++ 
      EHT99117.1  89 LSGELRLFCSVTAAYSHLPPILDRFRAEHPQVEIKLTTGDAADAIEMVQSGNADLAIAGRPEsLPASIDFTTLGLLPLGLIAPAL-PCPVrsQAT 182
                     79*******************************************************************************9965.444443666 PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCT.TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST..TCEEEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalrea.glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep..plprelylvy 187
                      ++ d  + p+il +e+ + r+++e ++r++  ++p +  +v   ea++++va G+Giallp+ +++++++  r ++lpl+     +p el++++
      EHT99117.1 183 EEAPDWSQIPFIL-PEQGPVRRAIELWFRRHrIVNPLIYATVAGHEAIVSMVALGCGIALLPDVVLENSPEPVRNRVLPLESVasVAPLELGVCV 276
                     688888888****.76999************455669**********************************99999999999986777******* PP

                     ETTCCCHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidfl 204
                     +k+    p++ af+ +l
      EHT99117.1 277 QKKLLGEPLISAFWHQL 293
                     *************9876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.4   1.9e-23   2.8e-20       1      60 []       3      62 ..       3      62 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.9e-23
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+l+lf+++ae+ +f r A+++++s++++srqi+rLEe +g+ Lf R++r ++LTeaGe
  EHT99117.1  3 LRDLKLFLHLAESCHFGRTARAMHVSPSTLSRQIQRLEEDVGHALFLRDNRTVTLTEAGE 62
                79*********************************************************7 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.3   4.3e-08   6.5e-05       8      48 ..      11      51 ..       8      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.3e-08
                HHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHH CS
      HTH_30  8 ylenggnisatAkaLhvHrnTlryRLrrieellgldlddpd 48
                 l++++   +tA+a+hv++ Tl+  ++r+ee  g+ l   d
  EHT99117.1 11 HLAESCHFGRTARAMHVSPSTLSRQIQRLEEDVGHALFLRD 51
                58899999***********************9998765444 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05     0.046      24      44 ..      22      42 ..      14      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
      HTH_24 24 AerlglSpstvnrrlkrLeee 44
                A++ ++Spst++r+++rLee+
  EHT99117.1 22 ARAMHVSPSTLSRQIQRLEED 42
                88999**************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.1e-05     0.031      24      43 ..      22      41 ..      10      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
                HHHHTS-HHHHHHHHHHHHH CS
        MarR 24 akklgvskstvtrvldrLek 43
                a++++vs+st++r++ rLe+
  EHT99117.1 22 ARAMHVSPSTLSRQIQRLEE 41
                899****************8 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05     0.043      13      54 ..     106     147 ..      94     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
                 HHHHHHHH.HHHH---EEEEESSHHHHHHHHHHH..-SEEEES CS
  SBP_bac_11  13 lrelaaaF.eahtgvkvevsaggsgklarqiadgarpDvwipa 54 
                 l  + ++F ++h++v++++++g+++++++++++g  +D+ i++
  EHT99117.1 106 LPPILDRFrAEHPQVEIKLTTGDAADAIEMVQSG-NADLAIAG 147
                 56799***5569**********************.77877766 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.6e-05     0.083      28      47 ..      22      41 ..       8      42 .. 0.89
   2 ?   -2.3   0.0       2.9   4.4e+03      14      33 ..      49      66 ..      45      69 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
                HHHHTSSHHHHHHHHHHHHH CS
      MarR_2 28 arrlglsksavsrilkrLva 47
                ar++++s+s++sr ++rL++
  EHT99117.1 22 ARAMHVSPSTLSRQIQRLEE 41
                99****************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
                HHCTTTSEEEHHHHHHHHTS CS
      MarR_2 14 Lgrrpgrdltvgelarrlgl 33
                L  r+ r +t +e  +rl+l
  EHT99117.1 49 L--RDNRTVTLTEAGERLKL 66
                4..44445999999999976 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.21      22      43 ..      20      41 ..      19      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
      HTH_23 22 eIAreLgvsrrTvyrwlkryre 43
                + Ar+++vs++T++r ++r +e
  EHT99117.1 20 RTARAMHVSPSTLSRQIQRLEE 41
                579****************854 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.16      25      43 ..      20      38 ..      10      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      HTH_38 25 eIArrLgrspsTIsRElkR 43
                + Ar +++spsT sR ++R
  EHT99117.1 20 RTARAMHVSPSTLSRQIQR 38
                56*************9998 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.25      28      49 ..      21      42 ..      16      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                    HHHHHTS-HHHHHHHHHHHHHT CS
  Fe_dep_repress 28 laerLnvspssVsemlkkLekd 49
                     a+++ vsps+ s  +++Le+d
      EHT99117.1 21 TARAMHVSPSTLSRQIQRLEED 42
                    599****************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0003      0.45      17      38 ..      20      41 ..      11      53 .. 0.91
   2 ?   -1.8   0.0       2.4   3.6e+03      12      29 ..      54      72 ..      45      79 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0003
      HTH_28 17 eaArelgisrrtvyrWikryee 38
                 +Ar++++s++t++r i+r+ee
  EHT99117.1 20 RTARAMHVSPSTLSRQIQRLEE 41
                58*****************998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.4
      HTH_28 12 GhsvreaArelgi.srrtv 29
                 ++ +ea ++l +  ++t+
  EHT99117.1 54 TVTLTEAGERLKLfAQQTL 72
                3588899999988777776 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00094       1.4      15      52 ..       8      44 ..       4      44 .. 0.83
   2 ?   -1.0   0.0       1.3   1.9e+03      19      40 ..      49      71 ..      46      82 .. 0.73
   3 ?    0.4   0.1      0.46   6.8e+02      10      20 ..     200     210 ..     198     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00094
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH.CT CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLee.ag 52
                ++ +L  ae   ++  a+++ +s++tls++++ Lee +g
  EHT99117.1  8 LFLHL--AESCHFGRTARAMHVSPSTLSRQIQRLEEdVG 44
                55566..888888889999****************9665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                HSTCTTB-HHHHHHHHT.S-HHH CS
      HTH_20 19 Laraegltaselaerld.lsknt 40
                L++++ +t++e  erl   +++t
  EHT99117.1 49 LRDNRTVTLTEAGERLKlFAQQT 71
                57788999999999997334444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.46
                 HHHHHHHHHHS CS
      HTH_20  10 PvRrrilraLa 20 
                 PvRr+i+ +++
  EHT99117.1 200 PVRRAIELWFR 210
                 9******9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2084.23
//
Query:       EHT99118.1  [L=515]
Description: threonine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-79  266.9   4.6    2.9e-79  266.5   4.6    1.1  1  PALP            Pyridoxal-phosphate dependent enzyme
    4.3e-59  196.3   0.0      5e-30  103.1   0.0    2.4  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh
     0.0088   15.8   0.0      0.021   14.5   0.0    1.6  1  TraT            Enterobacterial TraT complement resistance pr


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.5   4.6   4.9e-83   2.9e-79       5     294 .]      29     316 ..      25     316 .. 0.98

  Alignments for each domain:
  == domain 1  score: 266.5 bits;  conditional E-value: 4.9e-83
                 SSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-E CS
        PALP   5 igpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGae 103
                 +  TPl + +++s++lg  +++K+E+ +p  SfK+Rga+ ++a l+e+++a++vv+as+GNh++++A+ a +lG+k+ iv+p  +   kv++ r++G e
  EHT99118.1  29 AQVTPLQKMEKISARLGNTILVKREDRQPVHSFKLRGAYAMIAGLDEEQKARGVVTASAGNHAQGVALSATKLGIKSLIVMPLATADIKVDAVRAFGGE 127
                 568************************************************************************************************ PP

                 EEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCC CS
        PALP 104 vvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarsl 202
                   ++g ++dea+a+a ela + +g+++v++fd+p+vi+g+gt+++E+  q++  +d v+vpvGgGgl+aG+a  +k+  p+++vi+ve+e s++l ++l
  EHT99118.1 128 AFLYGANFDEAKAKAIELATQ-QGYTFVPPFDHPAVIAGQGTLAMEL-LQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVESEDSACLKAAL 224
                 *********************.*************************.58889********************************************** PP

                 S..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEEEE-B CS
        PALP 203 ragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrvvviltg 294
                 +ag++v++p    +a+g+av++ ++++f+l+++++d+ivtv+++++++am+ l ++ + v+eps+a ala++ k +++ +++++ r  ++l+g
  EHT99118.1 225 EAGEPVDLPRVGLFAEGVAVKRIGNETFRLCQEYLDDIVTVDSDAICAAMKDLFEDVRAVAEPSGALALAGMkKYVQQHDIQGE-RLAHVLSG 316
                 ************************************************************************************.****9998 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   8.4e-34     5e-30       1      91 []     329     419 ..     329     419 .. 0.98
   2 !   90.9   0.0   5.6e-30   3.3e-26       2      91 .]     425     512 ..     424     512 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 8.4e-34
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaee.ldelierleklgykvedlsknellkehl 91 
                     er+e+ge++eallav++peq+G+++kF+++lggr  iT+f+Yr+a++++++++vgv++++  + ++e+i +l+++gy+v+dls++e++k h+
      EHT99118.1 329 ERCELGEQREALLAVTIPEQQGSFLKFCQTLGGRS-ITEFNYRYADTDKACIFVGVRLTRGMDeRAEIISQLTENGYQVVDLSDDEMAKLHV 419
                     8**********************************.***********************998879************************997 PP

  == domain 2  score: 90.9 bits;  conditional E-value: 5.6e-30
                     HHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   2 raevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91 
                     ++ ++  +e+l+++efpe pGaL+kFl++lg++++i+lf+Yr++g+++g+vL ++e+ ++e    ++e+l++lgy+++d+++n +++ +l
      EHT99118.1 425 GRPSKPLRERLFSFEFPEAPGALLKFLQTLGTHWNISLFHYRSHGTDYGRVLTAFELGNDEP--RFEEHLADLGYDFHDETHNPAFRFFL 512
                     6778899***************************************************7766..**********************9987 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.5e-06     0.021      20      62 ..     375     416 ..     371     424 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.5e-06
        TraT  20 ekrtiyvqirntSdkqeldleqkiiskLeakGYkvvn..dpkeAa 62 
                 +k  i+v +r t +++e   +++iis+L+++GY+vv+  d ++A+
  EHT99118.1 375 DKACIFVGVRLTRGMDE---RAEIISQLTENGYQVVDlsDDEMAK 416
                 6678******9999944...67**************733555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3571.26
//
Query:       EHT99119.1  [L=616]
Description: dihydroxyacid dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-216  720.1   3.4   1.6e-216  719.9   3.4    1.0  1  ILVD_EDD       Dehydratase family
  ------ inclusion threshold ------
       0.77   10.0   3.6         34    4.7   0.5    3.1  3  Ribosomal_S27  Ribosomal protein S27a


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  719.9   3.4  1.8e-220  1.6e-216       1     517 []      34     607 ..      34     607 .. 0.95

  Alignments for each domain:
  == domain 1  score: 719.9 bits;  conditional E-value: 1.8e-220
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kpii+++ns++++vp+hvhl++l++ v+e++e+aggv+ efnti+v+Dgiamg+ gm ysLpsReliadsve+m++a+++Da+v+is+CDKi+Pg+lma
  EHT99119.1  34 KPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMA 132
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk......kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaer 192
                 a+rlniP+ifvsgGpmeagk+k      kl   + ++a+ + a+ ++s+++ e++e++acp++GsCsgm+TAn+m+cl+ealGls pg++s+ at+a+r
  EHT99119.1 133 ALRLNIPVIFVSGGPMEAGKTKlsdqiiKL---DLVDAMIQGANPNVSDADSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADR 228
                 ******************997776643333...566*************************************************************** PP

    ILVD_EDD 193 kelaeeagkrivelv.....ekd..lkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkP.sgkydmedlh 283
                 k+l+ +agkriv+l+     ++d  + pr+i+tk+afeNA+++++a+GGStN+vlHllA+A+e +v+++++d+d+lsrkvp l+k++P + ky+med+h
  EHT99119.1 229 KALFINAGKRIVSLTkryyeQDDvnMLPRNIATKAAFENAMTLDIAMGGSTNTVLHLLAAAQEGEVDFNISDIDRLSRKVPQLCKVAPsTPKYHMEDVH 327
                 **************9888863335577*************************************************************999******** PP

    ILVD_EDD 284 raGGvpavlkeLlkagllhgdvltvtgktlaenleeaev.....................................keqdvirplekplskegglavLk 345
                 raGGv  +l eL++agl+++++  + +++l+e+l++ ++                                     +++ +ir+ e+++s++gglavL+
  EHT99119.1 328 RAGGVIGILGELDRAGLIDTSARNILQQSLRETLDQYDImltqdqavkdmfragpagirttqafsqscrwdtldddRAEGCIRTREHAYSQDGGLAVLY 426
                 **********************************9966679999*******************************99********************** PP

    ILVD_EDD 346 GnLapeGavvKtsaveeellkfegpArvfdseeeaveailkgkikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvi 444
                 Gn+a++G++vKt++v++e+l+f+gpA+v++s+++aveail gk+ agdvvviryeGPkGgpGm+Eml+pt++l+++glgk++alitDGRfSG+++gl+i
  EHT99119.1 427 GNIAEDGCIVKTAGVDKEILTFSGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTTYLKSMGLGKSCALITDGRFSGGTSGLSI 525
                 *************************************************************************************************** PP

    ILVD_EDD 445 ghvsPEAaegGpialvedGDiieidiekrtlelevseeelaaRra........awkpekkv.......ktrgllakyaklvssaseGA 517
                 gh sPEAa+gG+ialv+dGDii idi++r ++l+v ++el+aRr+        a              + + +l++ya+l++sa++GA
  EHT99119.1 526 GHASPEAANGGTIALVKDGDIIDIDIPNRGIRLAVPDNELHARREeqeargdaA------YtpmnrqrDVSFALRAYASLATSADKGA 607
                 ********************************************7345444444......144444435599***************8 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.73   6.5e+03      20      32 ..     118     133 ..     117     134 .. 0.73
   2 ?    4.7   0.5    0.0038        34       7      32 ..     176     202 ..     175     206 .. 0.72
   3 ?    4.4   0.0    0.0048        43      25      37 ..     217     229 ..     214     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.73
                    -SS-S...-TTSBEEE CS
  Ribosomal_S27  20 CpreC...GaGvfMAe 32 
                    C ++C    +G+ MA 
     EHT99119.1 118 CISNCdkiTPGMLMAA 133
                    6666656689999995 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0038
                    ESSSSSEEESS-B-SS-S..-TTSBEEE CS
  Ribosomal_S27   7 vddsgkverlrkeCpreC..GaGvfMAe 32 
                    v d ++ +  r  Cp+ C  + G+f A+
     EHT99119.1 176 VSDADSEQIERSACPT-CgsCSGMFTAN 202
                    666667788899****.94446888776 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0048
                    -TTSBEEECTTEE CS
  Ribosomal_S27  25 GaGvfMAehkdRk 37 
                    G+G  +A h+dRk
     EHT99119.1 217 GNGSLLATHADRK 229
                    89**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4197.13
//
Query:       EHT99120.1  [L=309]
Description: branched-chain amino-acid aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-48  164.3   0.0    4.3e-48  164.1   0.0    1.0  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.0   2.4e-52   4.3e-48       2     223 .]      36     268 ..      35     268 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 2.4e-52
  Aminotran_4   2 lfEtmrvy....ngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglg.aatsepsvavyvsalppgpesek 94 
                  +fE++r y       +f+  eH++RL+ sa++   +++++ +el+++++e+++ nn + +++r+l + g+ glg ++    + +v+v+a+p+g++  +
   EHT99120.1  36 VFEGVRCYdshkGPVVFRHREHMQRLHDSAKIYRFPIRHSVDELMEACREVIRVNNLKSAYIRPLAFVGDVGLGvNPPDGFTTDVIVAAFPWGAYLGA 133
                  9*****996654444499***************9**************************************************************** PP

  Aminotran_4  95 e.....lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallelak 186
                  e     + +++ss+ r+ ++   + aK    yl ++l+  ea+++g++e + +d++g ++Eg+  N+f vk+g l+tPp+ s+ LpGitr+a++ la+
   EHT99120.1 134 EalengIDAMVSSWNRVAPNTLPTAAKAGGnYLSSLLVGSEARRHGYQEGIALDTNGLISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIITLAR 231
                  *************999999999999998777******************************************************************* PP

  Aminotran_4 187 algleveereitlkdleeadeafltntlrgvlpvrsi 223
                  + g+ev+e++++ + l  ade+f+++t+++++pvrs+
   EHT99120.1 232 NMGIEVREQALSRESLYLADEVFMSGTAAEITPVRSV 268
                  ***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2434.50
//
Query:       EHT99121.1  [L=85]
Description: acetolactate synthase small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-27   95.4   0.5    1.6e-27   95.1   0.5    1.1  1  ACT_5     ACT domain
    1.3e-05   25.7   0.4    1.7e-05   25.3   0.4    1.1  1  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.5   1.8e-31   1.6e-27       2      62 .]      13      73 ..      12      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 1.8e-31
       ACT_5  2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVesersvelLsnQleKLidVlkV 62
                +p++LeR+lrvvr+rgF+v+s+nm t+ ++++++ie+tV+s+rsv+lLs+Ql+KL+dV++V
  EHT99121.1 13 RPEILERILRVVRHRGFQVCSMNMATVANAENINIEMTVASQRSVDLLSSQLSKLMDVACV 73
                8*********************************************************987 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.4   1.9e-09   1.7e-05       8      78 ..       5      73 ..       3      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.9e-09
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisV 78
                +l++ea+ r+ +L +i++v+ + + ++ s+n+ t    +  +i+i++ V + + ++ +  +L ++ +V  V
  EHT99121.1  5 QLSIEARFRPEILERILRVVRHRGFQVCSMNMATV--ANAENINIEMTVASQRSVDLLSSQLSKLMDVACV 73
                799*******************************5..5699************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 641.84
//
Query:       EHT99122.1  [L=548]
Description: acetolactate synthase large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-57  193.1   4.6    3.9e-57  192.6   0.3    2.9  3  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.8e-48  163.6   0.2    1.2e-46  158.3   0.0    2.8  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
      1e-42  145.1   0.2    2.2e-42  144.0   0.2    1.6  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0047   16.7   2.0     0.0078   16.0   2.0    1.3  1  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.24   11.2   0.0    1.3  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha
       0.15   10.8   0.1       0.27   10.0   0.1    1.3  1  XFP_N         XFP N-terminal domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.3   1.3e-60   3.9e-57       1     169 [.       1     167 [.       1     170 [. 0.98
   2 ?    0.2   0.5      0.17   5.1e+02      61      93 ..     194     227 ..     182     231 .. 0.73
   3 ?   -1.4   0.0      0.52   1.6e+03     139     162 ..     503     525 ..     492     529 .. 0.82

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 1.3e-60
                   EEHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   1 mtvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   mt+a+ +v+aL+a+gv++vfg+pG+ i+p++dal +  g++++l+rhEqga++aA gyar+tgk gv+++tsgpGatn++t+la+A+ d++P+++l+
    EHT99122.1   1 MTGAQWVVQALRAQGVDTVFGYPGGAIMPVYDALYDG-GVEHLLCRHEQGAVMAAIGYARSTGKTGVCIATSGPGATNLITGLADAMMDSVPVVALT 96 
                   89***********************************.7********************************************************** PP

                   EE--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  98 gdrptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   g+++++ +g++++q e+d l+l   +tk+++ v+s ++lp+++++A+++a+sgrpgPv++++pkd++l++ +
    EHT99122.1  97 GQVASAFIGTDAFQ-EIDVLGLSLACTKHSFMVESLDDLPSVMAEAFAIAQSGRPGPVLVDIPKDIQLAKGE 167
                   **************.*******99*******************************************99765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
                   HHTS-EEEEE-CHHHHHHCHHHHHHHHHH.T--E CS
  TPP_enzyme_N  61 atgkpgvvlvtsgpGatnaltalaeAkvd.riPl 93 
                   a+ k  +++v  g+G++ a++al   +++ +iP 
    EHT99122.1 194 AQAKKPMLYVGGGVGMAQAVPALRALMQEtGIPA 227
                   346667889999*********9976665546665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.52
                   HHHHHHHHHHSSS--EEEEEEEHH CS
  TPP_enzyme_N 139 alrrAirtalsgrpgPvylelpkd 162
                   +++ Ai+++  +  gP +l ++ d
    EHT99122.1 503 QVDAAIDAL-LNSEGPYFLHVSID 525
                   577788888.9999*****99887 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.048   1.4e+02     104     153 .]     107     157 ..      49     157 .. 0.74
   2 !  158.3   0.0     4e-50   1.2e-46       1     153 []     374     522 ..     374     522 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.048
                   BB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.....CSSSEEEEEE CS
  TPP_enzyme_C 104 agkdlkpvdfaklaealGakgarvekadveeleealkeal.....ekkgpaliev 153
                   +   ++++d+  l  a+  + + ve+   ++l  +++ea+      + gp+l+++
    EHT99122.1 107 D--AFQEIDVLGLSLACTKHSFMVESL--DDLPSVMAEAFaiaqsGRPGPVLVDI 157
                   3..367778888888885557776777..88888888888777777888888875 PP

  == domain 2  score: 158.3 bits;  conditional E-value: 4e-50
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++++waa+++ +  p  ++ts+glgtmG+glpaAiGa++a+p+ +v++++GDG+++m++qel t+ r +lp+++++l+N+ +gm++++q+ f++
    EHT99122.1 374 DVGQHQMWAAQHIACDAPEDFITSSGLGTMGFGLPAAIGAQVARPHDTVICVSGDGSIMMNIQELGTIKRGKLPVKILLLDNQRLGMVRQWQQLFFD 470
                   89*******************************************99************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +r+s++    ++++df  la a+ ++g r++++  +++++a+++ l+++gp +++v
    EHT99122.1 471 GRYSETI--LTDNPDFLTLASAFDIPGQRITRK--DQVDAAIDALLNSEGPYFLHV 522
                   ***9976..69999*******************..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.2   7.5e-46   2.2e-42       3     137 .]     188     321 ..     186     321 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 7.5e-46
                   HHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTT CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgsepe 99 
                   +a +++++ak+p+++vGggv  ++a  +lr+l +++giP v tl+g g+++ d+++ylgmlg+hg+kaan a++++Dl++a+Garfdd r+tg+ ++
    EHT99122.1 188 DARAMMAQAKKPMLYVGGGVGMAQAVPALRALMQETGIPAVATLKGLGSVDADSECYLGMLGMHGTKAANLAVQSCDLLIAVGARFDD-RVTGKLDT 283
                   57899***********************************************************************************.******** PP

                   TTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M 100 fapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   fap a +ih+d+dpae++k ++++++++gd++ +l aL
    EHT99122.1 284 FAPLASVIHLDVDPAELNKLRRAHVSLQGDLNHVLPAL 321
                   **********************************9987 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.0   2.6e-06    0.0078      39     144 ..      40     147 ..      10     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.6e-06
                 EEEE-SSHHHHHHHHHH.HHCTT-EE.EEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEEEE--TTCHHHHS---EEEE-SSHHHHHHHH CS
       POR_N  39 evvqmesEigaisaviG.AaaaGara.aTaTSgqGllLmienlglaageelPvvivvvaRalpstglsirtdqsDlmaardtglivlasenvqeafdla 135
                 e +    E ga++a+iG A  +G  +   aTSg+G    i  l  a+++ +Pvv    + a +  g+  +++   l   +      +++e+  +     
  EHT99122.1  40 EHLLCRHEQGAVMAAIGyARSTGKTGvCIATSGPGATNLITGLADAMMDSVPVVALTGQVASAFIGTDAFQEIDVLGLSLACTKHSFMVESLDDLPSVM 138
                 5677789**********6667887652579*************************99999988888888887766666678888888888888888888 PP

                 HHHHHHHHH CS
       POR_N 136 lvAfnlAek 144
                 ++Af++A +
  EHT99122.1 139 AEAFAIAQS 147
                 888888876 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05      0.24      22      70 ..     183     231 ..     165     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
                 E--SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEET CS
       CO_dh  22 eealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvata 70 
                  +a+  +  m+ +ak+P+l vG+ v  a    a    + e  ++ vat 
  EHT99122.1 183 HQAIIDARAMMAQAKKPMLYVGGGVGMAQAVPALRALMQETGIPAVATL 231
                 455667889****************999999999999999999999985 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   8.9e-05      0.27     127     169 ..     385     430 ..     382     435 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.9e-05
       XFP_N 127 hvaaetPGsi.he.G.GelGyalshayGavldnPdlivacvvGdGe 169
                 h+a ++P       G G +G+ l  a+Ga + +P+  v+cv GdG 
  EHT99122.1 385 HIACDAPEDFiTSsGlGTMGFGLPAAIGAQVARPHDTVICVSGDGS 430
                 6666666543122123899*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 4485.27
//
Query:       EHT99123.1  [L=506]
Description: magnesium chelatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-91  302.9   0.0    1.4e-90  302.2   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
    4.7e-42  142.7   0.0    9.2e-42  141.7   0.0    1.5  1  ChlI             Subunit ChlI of Mg-chelatase
    3.2e-28   98.2   2.3    6.7e-28   97.2   2.3    1.6  1  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal
      3e-12   46.1   0.0      3e-10   39.6   0.0    2.2  2  MCM              MCM P-loop domain
    1.6e-10   41.1   0.0    4.3e-10   39.7   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    7.5e-06   25.8   0.0       0.02   14.6   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
    0.00029   19.8   0.0      0.027   13.3   0.0    2.3  2  AAA_32           AAA domain
     0.0012   19.3   0.2      0.011   16.1   0.0    2.6  3  AAA_16           AAA ATPase domain
     0.0014   19.0   0.4     0.0074   16.7   0.4    2.2  1  AAA              ATPase family associated with various cellul
     0.0033   17.2   0.0       0.38   10.5   0.0    2.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.035   14.4   0.0    1.7  1  AAA_22           AAA domain
      0.018   14.8   0.1      0.041   13.6   0.1    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.025   14.7   0.1       0.11   12.7   0.0    2.1  2  AAA_33           AAA domain
      0.034   13.9   0.0      0.064   13.0   0.0    1.4  1  AAA_24           AAA domain
      0.034   13.7   0.0      0.088   12.3   0.0    1.6  2  AAA_7            P-loop containing dynein motor region
      0.055   13.3   0.1       0.32   10.9   0.0    2.2  2  AAA_lid_2        AAA lid domain
      0.063   13.4   0.0         11    6.1   0.0    2.5  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.066   12.4   0.0       0.12   11.6   0.0    1.3  1  TIP49            TIP49 P-loop domain
      0.073   13.4   0.1       0.16   12.3   0.1    1.5  1  AAA_19           AAA domain
      0.086   12.7   0.2        2.3    8.1   0.1    2.4  2  AAA_lid_8        AAA lid domain
      0.093   12.3   0.1       0.27   10.8   0.1    1.7  1  AAA_25           AAA domain
       0.19   10.8   0.0       0.35   10.0   0.0    1.4  1  PIF1             PIF1-like helicase


Domain annotation for each model (and alignments):
>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.2   0.0   1.7e-93   1.4e-90       1     202 [.     189     388 ..     189     392 .. 0.98

  Alignments for each domain:
  == domain 1  score: 302.2 bits;  conditional E-value: 1.7e-93
  Mg_chelatase   1 dlkdvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsaskaalvGggskp 97 
                   dl+d++Gqe+ +ralei+aaGgHnl+l+GppG+GKtmla+rlp+++ppls++eale+a+ias++++   ++ +++rpfraphhsas  al+Ggg+ p
    EHT99123.1 189 DLRDIVGQEQGRRALEITAAGGHNLMLIGPPGTGKTMLATRLPGIMPPLSDQEALECAAIASLSNAGPVHHSWRKRPFRAPHHSASLYALIGGGALP 285
                   89*********************************************************************************************** PP

  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldRid 194
                   +pGeislahnGvLfLDElpef+r+vl++LReP+e+gev+isra+akv +parfqlvaamNp+p+g+++ +++++  s+++i rYlsklsgp+ldR+d
    EHT99123.1 286 RPGEISLAHNGVLFLDELPEFQRSVLDALREPIESGEVAISRARAKVVYPARFQLVAAMNPSPTGHYQGQHNRT--SPQQILRYLSKLSGPFLDRFD 380
                   ********************************************************************887766..7******************** PP

  Mg_chelatase 195 lqvevkkl 202
                   l++ev+ l
    EHT99123.1 381 LSLEVPLL 388
                   ****9865 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   1.1e-44   9.2e-42       1     121 []      21     142 ..      21     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 1.1e-44
        ChlI   1 vevdvskglpkftivGlpdtavkeskervrsalknsgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieae..eetlflGeLsldGslrpv 97 
                 +ev++s+glp++t+vGlp+t+vke++ervrsa+ nsgf+fpa++it+nL Padl+keG ++DLp+A++il a+eq +ae    + flGeL+l+G l  v
  EHT99123.1  21 IEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFDFPARRITINLGPADLPKEGGRYDLPMAVAILVASEQLPAEklGGYEFLGELALNGALCGV 119
                 8**************************************************************************99884569**************** PP

        ChlI  98 kgvlpialaakkegikkvivpken 121
                 + ++p+alaa k+g +++i+++en
  EHT99123.1 120 QAAIPAALAAIKAG-RQLILSAEN 142
                 **************.999999887 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   2.3   8.2e-31   6.7e-28       1      93 []     400     492 ..     400     492 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 8.2e-31
  Mg_chelatase_C   1 gesSaevrerVaaAreiqkeRfakenaelsgeelrevceldeeaeelleeaierlglsaRaydrilkvArTiADLegseeieeehlaeAlqyR 93 
                     gesS +vrerV+ Ar++q +R +k na+l ++e+ ++c+l ++++++le+++++lgls+Ra++rilkvArT+ADL+g+e+i++ hl+eA++yR
      EHT99123.1 400 GESSVAVRERVLVARQRQIARSGKINAHLANAEVLRWCALCSADAKWLESVLNQLGLSVRAWQRILKVARTVADLAGEETISRYHLQEAVSYR 492
                     69********************999*******************************************************************9 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.024        20      51      77 ..     204     230 ..     190     239 .. 0.76
   2 !   39.6   0.0   3.7e-13     3e-10     114     201 ..     287     382 ..     279     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.024
                 SSBBCSS-EEEEEESSTSTHHHHHHHH CS
         MCM  51 ktklrgdinvllvgdpgtaKsqlLkyv 77 
                 +++  g  n++l+g pgt+K+ l  ++
  EHT99123.1 204 EITAAGGHNLMLIGPPGTGKTMLATRL 230
                 56678899*************986655 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 3.7e-13
                 ETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--S.SSSCC..TTS-HHHHS.....SSSHHHHHHSSEE CS
         MCM 114 aGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpk.agryd..kkksvaeni.....nlsaalLsrFDli 201
                  G + la++Gv+ +De+ + +++  +al E +E+ ++ i++a  +++ +ar  ++aA+np+ +g+y+  ++++  ++i     +ls + L+rFDl 
  EHT99123.1 287 PGEISLAHNGVLFLDELPEFQRSVLDALREPIESGEVAISRARAKVVYPARFQLVAAMNPSpTGHYQgqHNRTSPQQIlrylsKLSGPFLDRFDLS 382
                 68889*******************************************************999999722345666777666667999*******96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   5.2e-13   4.3e-10       1     127 [.     212     356 ..     212     366 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 5.2e-13
                 EEEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--.........--------..............G-SEEEEESGGG--HH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreikngttslvdsplvraar..............egeilvlDEveraese 80 
                 +++L+GppGtgK++la rl   +     +  +e  ++ +  ++  +  +++ ++ ++ ++  +l+ a                +  +l+lDE+ + +++
  EHT99123.1 212 NLMLIGPPGTGKTMLATRLPGIMpplsdQEALECAAIASLSNAGPVHHSWRKRPFRAPHHSASLY-ALIgggalprpgeislaHNGVLFLDELPEFQRS 309
                 689************************77777777788888888999****88999999999999.55569**************************** PP

                 HHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--......-T CS
       AAA_5  81 vlnsLlslleerrllleeggelvkaknddllerfrviatanpld.....rsl 127
                 vl++L  ++e  ++ +   +  v  ++      f+++a++np +     +++
  EHT99123.1 310 VLDALREPIESGEVAISRARAKVVYPAR-----FQLVAAMNPSPtghyqGQH 356
                 ***************9999988888775.....**********966654444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0017       1.4      15      46 ..     203     234 ..     195     252 .. 0.70
   2 !   14.6   0.0   2.5e-05      0.02      84     145 ..     285     348 ..     279     360 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
                      HHHHCTSSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  15 ikkvaktdlsvlitGesGtGKellaraiheas 46 
                      ++ +a+   ++++ G  GtGK++la+ +    
       EHT99123.1 203 LEITAAGGHNLMLIGPPGTGKTMLATRLPGIM 234
                      55556667899**************9886544 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.5e-05
                      -BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEESS-H CS
  Sigma54_activat  84 ekkGlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatnedl 145
                       + G ++ a++G+lfLDe+ e++ ++   L + +++gev  +r  ++   ++ ++++aa n ++
       EHT99123.1 285 PRPGEISLAHNGVLFLDELPEFQRSVLDALREPIESGEVaiSRARAKVVYPARFQLVAAMNPSP 348
                      578********************99999999999999862246666667788888888888665 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.3e-05     0.027       5      49 ..     188     229 ..     183     232 .. 0.87
   2 ?    3.9   0.0     0.022        18     471     511 ..     452     492 ..     437     494 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.3e-05
      AAA_32   5 epleeiigqeRAvealefglkikkkgYNifvlGesgtGrttlvkr 49 
                 ++l++i+gqe++ +ale+     + g+N+ ++G++gtG+t+l++r
  EHT99123.1 188 DDLRDIVGQEQGRRALEITA---AGGHNLMLIGPPGTGKTMLATR 229
                 5789*************975...67***************99987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.022
      AAA_32 471 eklstrfseiadllrEAdywakkegaevveaehVekAleek 511
                 ++l ++++  + +l+ A ++a+ +g+e++++ h+++A++ +
  EHT99123.1 452 NQLGLSVRAWQRILKVARTVADLAGEETISRYHLQEAVSYR 492
                 567788999999*************************9865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05     0.011      13      45 ..     200     231 ..     194     247 .. 0.86
   2 ?   -0.9   0.0       2.3   1.9e+03     138     157 ..     297     316 ..     290     384 .. 0.77
   3 ?   -1.7   0.0       4.1   3.3e+03      80     117 ..     449     481 ..     408     500 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrell 45 
                 ++ale +++g+ ++++l+G++G+GK+ l+++l+
  EHT99123.1 200 RRALEITAAGG-HNLMLIGPPGTGKTMLATRLP 231
                 67888777776.8999*************9886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.3
      AAA_16 138 vlvlDdlqwadeaslqllaa 157
                 vl+lD+l  ++ + l++l++
  EHT99123.1 297 VLFLDELPEFQRSVLDALRE 316
                 77888777777777777664 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.1
      AAA_16  80 ellrqlldeaesaeleawrekleealaavpelagaea.s 117
                 ++l+ql+       ++aw++ ++++++ v++lag+e  s
  EHT99123.1 449 SVLNQLGLS-----VRAWQR-ILKVARTVADLAGEETiS 481
                 444444433.....666766.555556677888777642 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4     9e-06    0.0074       1      18 [.     213     230 ..     213     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9e-06
                 EEEESSTTSSHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakav 18 
                 ++l+GppGtGKT+la  +
  EHT99123.1 213 LMLIGPPGTGKTMLATRL 230
                 589************876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00046      0.38       6      51 ..     190     228 ..     187     234 .. 0.77
   2 ?    3.6   0.0     0.061        50      81     115 ..     291     325 ..     280     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00046
      RuvB_N   6 leeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlak 51 
                 l++ +gqe+ +  l+i+ +           ++l+GpPG Gkt la+
  EHT99123.1 190 LRDIVGQEQGRRALEITAAGG-------HNLMLIGPPGTGKTMLAT 228
                 678888888888887754443.......24799***********97 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.061
      RuvB_N  81 nleekdvlfideihrlsraveevlysamedfrldi 115
                 +l ++ vlf+de+  ++r+v + l   +e  ++ i
  EHT99123.1 291 SLAHNGVLFLDELPEFQRSVLDALREPIESGEVAI 325
                 688999**************999999999877766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.4e-05     0.035       7      25 ..     212     230 ..     207     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrl 25 
                  l+++G++GtGKT+l+ rl
  EHT99123.1 212 NLMLIGPPGTGKTMLATRL 230
                 589*************987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.1e-05     0.041      48      67 ..     211     230 ..     201     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.1e-05
   IstB_IS21  48 enivllGpsGvGKshlaial 67 
                 +n++l+Gp+G+GK+ la+ l
  EHT99123.1 211 HNLMLIGPPGTGKTMLATRL 230
                 79***************865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013      0.11       2      19 ..     213     230 ..     213     241 .. 0.92
   2 ?   -2.5   0.0       6.5   5.3e+03      75      92 ..     451     468 ..     399     473 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_33   2 vllvGlpGsGKstlaerl 19 
                 ++l+G+pG+GK+ la+rl
  EHT99123.1 213 LMLIGPPGTGKTMLATRL 230
                 589************998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.5
      AAA_33  75 ldatnlsrrerarflkla 92 
                 l +  ls r+++r+lk+a
  EHT99123.1 451 LNQLGLSVRAWQRILKVA 468
                 333334455555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-05     0.064       4      24 ..     212     231 ..     210     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.9e-05
      AAA_24   4 kiliyGpsgiGKTtlakelgp 24 
                 +++++Gp+g+GKT+la++l p
  EHT99123.1 212 NLMLIGPPGTGKTMLATRL-P 231
                 689**************99.4 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011     0.088      26      52 ..     203     229 ..     196     242 .. 0.85
   2 ?   -3.0   0.0       5.3   4.3e+03     149     161 ..     338     350 ..     330     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
       AAA_7  26 lelllknkkpvllvGptGtGKtviikd 52 
                 le   + +++++l+Gp GtGKt+++++
  EHT99123.1 203 LEITAAGGHNLMLIGPPGTGKTMLATR 229
                 566777899**************9876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
       AAA_7 149 vqlvaamgppggg 161
                  qlvaam+p   g
  EHT99123.1 338 FQLVAAMNPSPTG 350
                 699*****98666 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.3   1.9e+03      20      36 ..     155     176 ..     152     195 .. 0.63
   2 ?   10.9   0.0   0.00039      0.32      10      47 ..     453     489 ..     445     492 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
   AAA_lid_2  20 lallraArAlAalegr.....d 36 
                 l++++   ++A+l++r     +
  EHT99123.1 155 LVAAHLIDVCAFLHNRgeltiA 176
                 6667777788888888444440 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00039
   AAA_lid_2  10 elgvsgrRadlallraArAlAalegrdyVtpeDvkeaa 47 
                 +lg+s r a + +l++Ar+ A l+g+++++  +++ea+
  EHT99123.1 453 QLGLSVR-AWQRILKVARTVADLAGEETISRYHLQEAV 489
                 8999999.***************************997 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.013        11      12      41 ..     201     230 ..     197     250 .. 0.88
   2 ?    4.6   0.0     0.041        33      68      97 ..     293     322 ..     280     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
                      HHHHHHHT-SS-EEEEEETT--HHHHHHCC CS
  Sigma54_activ_2  12 erLeqaaqsklpvfltGekGsgkelvArlL 41 
                      + Le  a+   ++ l+G++G+gk++ A  L
       EHT99123.1 201 RALEITAAGGHNLMLIGPPGTGKTMLATRL 230
                      668888889999*************99766 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.041
                      TTTSEEEEEE-TT--HHHHHHHHHHHHHHT CS
  Sigma54_activ_2  68 akggtLylkdiadlskaeqkeLlellakae 97 
                      a++g+L+l ++++++++ +  L e ++++e
       EHT99123.1 293 AHNGVLFLDELPEFQRSVLDALREPIESGE 322
                      789***********************9966 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.12      15      68 ..     182     228 ..     165     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  15 edgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalai 68 
                 ++ e +++   +vGq++ r+a  +          +G+ ++l Gp+gtGkt la 
  EHT99123.1 182 NTDEITDDLRDIVGQEQGRRALEITA-------AGGHNLMLIGPPGTGKTMLAT 228
                 444455555689*********98864.......589***************996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00019      0.16       7      47 ..     207     247 ..     199     255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeill 47 
                 a+  ++l+++++pGtGKT + +    ++  l ++++ e+++
  EHT99123.1 207 AAGGHNLMLIGPPGTGKTMLATRLPGIMPPLSDQEALECAA 247
                 6778899***********98776666665555555555555 PP

>> AAA_lid_8  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.22   1.8e+02      30      47 ..     157     174 ..     154     178 .. 0.86
   2 ?    8.1   0.1    0.0029       2.3      16      49 ..     450     483 ..     433     487 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.22
   AAA_lid_8  30 ivkllkasAylngrdevn 47 
                 +++l+ ++A+l++r e +
  EHT99123.1 157 AAHLIDVCAFLHNRGELT 174
                 578999********9876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0029
   AAA_lid_8  16 eeeaiyvSDRRwkkivkllkasAylngrdevnls 49 
                   +++ +S R w++i+k+ ++ A l g++ ++ +
  EHT99123.1 450 VLNQLGLSVRAWQRILKVARTVADLAGEETISRY 483
                 556778899*******************999876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00033      0.27      33      53 ..     210     230 ..     183     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
      AAA_25  33 gelallaGapgtGKttlaldl 53 
                 g+  +l+G+pgtGKt+la+ l
  EHT99123.1 210 GHNLMLIGPPGTGKTMLATRL 230
                 66679************9865 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00043      0.35      18     122 ..     206     314 ..     194     320 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00043
                 ..HCTS-EEEEESTTSSCHHHHHHHHHHCHC.TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH..HHHTSCCC....HHHHHC-SEEEEE CS
        PIF1  18 lnekgklfFvtGsgGtgKtflwkallkklrs.egkivlavAssGvAalllegGrtahsrfkiplekdeestc..kikrgskl....aellkktsliiwD 109
                 ++  g+++ + G  GtgKt+l ++l  ++ + +++ +l  A   +A+l    G + hs  k p ++ ++s    ++  g  l       l+++ ++ +D
  EHT99123.1 206 TAAGGHNLMLIGPPGTGKTMLATRLPGIMPPlSDQEALECAA--IASLSN-AGPVHHSWRKRPFRAPHHSASlyALIGGGALprpgEISLAHNGVLFLD 301
                 5567999**********************9867777887774..899886.99*****98888877655543233333322211113356777888888 PP

                 CGGGSBHHHHHHH CS
        PIF1 110 Eapmverecfeal 122
                 E p  +r++++al
  EHT99123.1 302 ELPEFQRSVLDAL 314
                 8888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3849.24
//
Query:       EHT99124.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-20   72.2   0.0    1.1e-19   70.9   0.0    1.5  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   6.2e-24   1.1e-19      31     209 ..     104     320 ..      89     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 6.2e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT99124.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegglrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999888877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT99124.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT99124.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2907.40
//
Query:       EHT99125.1  [L=112]
Description: uncharacterized DUF413 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-37  127.9   0.1    1.3e-37  127.7   0.1    1.1  1  DUF413    Protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> DUF413  Protein of unknown function, DUF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.1   7.1e-42   1.3e-37       1      89 [.      10      98 ..      10      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 7.1e-42
      DUF413  1 rFfDdknfprGfsrsGdFtikeaelLeqyGkalkaLeegelePeteeekqfvevvkgekaaetelekvWlkYlklirrkkrfhtlvgtk 89
                rFfD+k++prGfsr+GdFtikea+lLe++G a+++L+  ++eP+teee+ f+ev++g ++++te+e+vW+kY+++i+r+krfhtl+g k
  EHT99125.1 10 RFFDNKHYPRGFSRHGDFTIKEAQLLERHGVAFNELDLAKREPATEEERLFIEVCRGVREPQTEAERVWSKYMTRIKRPKRFHTLSGGK 98
                8************************************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 880.19
//
Query:       EHT99126.1  [L=274]
Description: DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-20   72.9   1.4      3e-20   71.9   1.4    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    1.3e-16   60.6   0.6    2.4e-16   59.7   0.6    1.4  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.039   13.8   1.0        0.1   12.4   1.0    1.8  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   1.4     5e-24     3e-20       2      60 .]       4      62 ..       3      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 5e-24
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l++f++v ++++f rAAe+L+l+q+avs +i++LE++lgv Lf+R+ +++rLT aGe
  EHT99126.1  4 ELLKTFLEVSRTRHFGRAAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTSAGE 62
                689********************************************8889*******7 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.6   4.1e-20   2.4e-16       3     203 ..      86     269 ..      84     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 4.1e-20
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     +++++L+iga+ +l +  l+p+l+ + +    ++le ++++ + l+++l+e++lDl i+++ p  ++l+++++++  l l+ s++   +++    
      EHT99126.1  86 QQHHELSIGASASLWEAYLTPWLQTLYENRESLHLEARVAQRHLLVKQLHERQLDLLITTEAPKMDELTSQQIGHISLALFRSRQT--EKR---- 174
                     7899*********************************************************************************4..445.... PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgr 191
                         ++++ i le g+ ++++   + +   +   ++l+++s++  ++l       a+lp+++  ++l ++ +v   +p+  +  r+ly+v+ +++
      EHT99126.1 175 ----EKYDYIKLEWGADFHQHQSYLSGGDDV---PVLTTTSAQVTRELLHTTGACAFLPEFW--QSLYSDLIV---MPDTSVAvRPLYAVWLQNS 257
                     ....446*************99999555555...99**************************..888887777...55555666*********** PP

                     CCHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidf 203
                      ++  +r+++ f
      EHT99126.1 258 DQQTYIRQLLKF 269
                     *******99876 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.0   1.8e-05       0.1       4      44 ..       5      47 ..       3      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                HHHHHHHTT..T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  4 TLrayleng..gnisatAkaLhvHrnTlryRLrrieellgldl 44
                 L+++le +  +   ++A+aL++    ++ R+r++e  lg++l
  EHT99126.1  5 LLKTFLEVSrtRHFGRAAEALYLTQSAVSFRIRQLENQLGVNL 47
                6777777664466789*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2229.10
//
Query:       EHT99127.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99127.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 873.72
//
Query:       EHT99128.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99128.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99128.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99128.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99128.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 884.53
//
Query:       EHT99129.1  [L=49]
Description: hypothetical protein CKS_0740 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 456.90
//
Query:       EHT99130.1  [L=149]
Description: 50S ribosomal subunit protein L9 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-25   87.1   0.7    1.3e-24   86.5   0.7    1.3  1  Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
    3.5e-22   77.7   0.4    6.5e-22   76.8   0.4    1.5  1  Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.7   1.4e-28   1.3e-24       2      86 .]      64     148 ..      63     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.4e-28
                     HHHHHHHHHSS..-EEEE--B-TT-BBSS---HHHHHHHHHHHT-----GGGEE-TTT.-SBSSEEEEEEESSSS-EEEEEEEEE- CS
  Ribosomal_L9_C   2 eaealaekLeakvkvtikakagedgklFGsVtakdIaealkkklgieidkkkieleep.iktlGeyevtvkLhkevtakikveVva 86 
                     + +a+aek++a  +vti++kag++gklFGs++++dIa+a++++ g+++ k++++l++  ++t+Ge+ev+ ++h+ev ak+ v+Vva
      EHT99130.1  64 ASNARAEKINALGTVTITSKAGDEGKLFGSIGTRDIADAVTAA-GVDVAKSEVRLPNGvLRTTGEHEVDFQVHSEVFAKLIVNVVA 148
                     57899*****84479****************************.*************77*************************96 PP

>> Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.4   7.3e-26   6.5e-22       1      45 [.       1      45 [.       1      47 [. 0.97

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 7.3e-26
                    -EEEESSCBTTTBSSS-EEE--HHHHHHTTTTTTSEEE-SHHHHH CS
  Ribosomal_L9_N  1 MkVILlkdVkglGkkGdvveVkdGyaRNyLipqglAvyAtpenlk 45
                    M+VILl++V +lG  Gd v+Vk+GyaRN+L+pqg+Av+At++n++
      EHT99130.1  1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNVE 45
                    9******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1230.28
//
Query:       EHT99131.1  [L=75]
Description: 30S ribosomal subunit protein S18 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-25   86.9   0.5    9.8e-25   86.5   0.5    1.2  1  Ribosomal_S18  Ribosomal protein S18


Domain annotation for each model (and alignments):
>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.5   5.5e-29   9.8e-25       3      52 .]      19      68 ..      17      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 5.5e-29
  Ribosomal_S18  3 ekidYkdvelLsqFiterGkIlprriTGlcakhQrklakaIkrARhlaLL 52
                   ++idYkd+ +L+++ite+GkI+p+riTG+ ak+Qr+la+aIkrAR+l LL
     EHT99131.1 19 QEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLL 68
                   69*********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 574.28
//
Query:       EHT99132.1  [L=105]
Description: primosomal replication protein N [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.6   0.0    1.7e-13   50.5   0.0    1.0  1  SSB       Single-strand binding protein family


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   9.3e-18   1.7e-13       1      96 [.       3      93 ..       3     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 9.3e-18
                ECEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEE CS
         SSB  1 vnkvilvGrlgkdpelrqtesGnavarftlatnrrfkdqegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrystei 96
                vn++ l G+++k+p+ + ++sG ++++f+l++n+ +++++g  +++++ ++v + g + +v+++ +++G+++++eG ++ ++  +  gq+++   +
  EHT99132.1  3 VNRLRLSGTVCKTPVRKISPSGIPHCQFVLEHNS-VQMEAGFHRQAWCRMPVILSGSAHQVITQHITVGTQLILEGFISCHQARN--GQSKM--VL 93
                69999*****************************.8889*****************************************99555..54443..34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 813.72
//
Query:       EHT99133.1  [L=131]
Description: 30S ribosomal subunit protein S6 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-28   97.1   0.0    7.5e-28   96.6   0.0    1.2  1  Ribosomal_S6  Ribosomal protein S6
  ------ inclusion threshold ------
      0.054   13.4   0.0       0.48   10.3   0.0    2.0  2  DUF2313       Uncharacterised protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   8.4e-32   7.5e-28       1      90 []       3      91 ..       3      91 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 8.4e-32
                  EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  1 kYElvfilrpelseeevkelvekvgklilenggvvrkveswGkrkLaypikkkteGyyvlmnfdaspevikelertlrldervlRylivk 90
                  +YE+vf+++p+ s e+v  ++e+++ +i+ ++g+++++e+wG+r+Laypi+k ++++yvlmn++a++evi+ele+++r ++ v+R+++++
    EHT99133.1  3 HYEIVFMVHPDQS-EQVPGMIERYTGAITGAEGTIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETNFRFNDAVIRSMVMR 91
                  7**********98.5************************************************************************986 PP

>> DUF2313  Uncharacterised protein conserved in bacteria (DUF2313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.4e-05      0.48     113     161 ..      15      63 ..       2      65 .. 0.76
   2 ?    2.1   0.0     0.018   1.6e+02     123     156 ..      63      97 ..      61     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.4e-05
     DUF2313 113 vganr...erYifqVqvpgasgagenLeawgaavlecllerikPahtevila 161
                  ++ +   erY+  ++ +  +g   +Le+wg ++l   ++++  ah +v ++
  EHT99133.1  15 SEQVPgmiERYTGAITGA--EGTIHRLEDWGRRQLAYPINKLHKAH-YVLMN 63 
                 333337778888888877..**************************.77766 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.018
     DUF2313 123 qVqvpgasgagenLea...wgaavlecllerikPaht 156
                 +V++p  +++ ++Le+   +++av++++++r+k a t
  EHT99133.1  63 NVEAP--QEVIDELETnfrFNDAVIRSMVMRVKNAVT 97 
                 56666..555555555544799**********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1034.24
//
Query:       EHT99134.1  [L=249]
Description: alpha/beta superfamily hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-14   51.9   0.1    9.3e-14   51.4   0.1    1.2  1  Peptidase_S9     Prolyl oligopeptidase family
    3.6e-13   49.3   1.7    5.7e-09   35.6   1.1    2.1  2  Hydrolase_4      Serine aminopeptidase, S33
    2.1e-07   30.9   0.6    1.1e-05   25.2   0.4    2.3  2  Abhydrolase_1    alpha/beta hydrolase fold
      8e-07   28.8   0.0    3.9e-06   26.6   0.0    1.8  1  DLH              Dienelactone hydrolase family
    5.8e-06   26.1   0.0    7.5e-06   25.8   0.0    1.2  1  Esterase         Putative esterase
    1.2e-05   26.0   1.8    2.5e-05   25.0   1.7    1.4  1  Abhydrolase_6    Alpha/beta hydrolase family
    1.6e-05   24.8   0.0      0.012   15.4   0.0    2.8  2  Abhydrolase_2    Phospholipase/Carboxylesterase
      2e-05   24.4   0.5       0.14   12.0   0.0    3.0  3  Abhydrolase_5    Alpha/beta hydrolase family
    0.00064   18.3   0.5     0.0074   14.8   0.0    2.0  2  PAF-AH_p_II      Platelet-activating factor acetylhydrolase, 
    0.00083   19.3   0.2     0.0045   16.9   0.2    1.9  1  BAAT_C           BAAT / Acyl-CoA thioester hydrolase C termin
     0.0021   17.0   0.0     0.0029   16.5   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
     0.0032   17.0   1.3      0.014   14.9   1.3    1.9  1  Esterase_phd     Esterase PHB depolymerase
  ------ inclusion threshold ------
      0.026   13.6   0.3       0.07   12.1   0.3    1.5  1  Chlorophyllase   Chlorophyllase
      0.045   12.4   0.6        3.8    6.1   0.2    2.1  2  AXE1             Acetyl xylan esterase (AXE1)
      0.051   12.8   0.0       0.25   10.5   0.0    1.8  2  DUF2920          Protein of unknown function (DUF2920)
      0.066   12.9   0.0       0.36   10.4   0.0    2.0  1  FSH1             Serine hydrolase (FSH1)
       0.13   11.6   0.0       0.61    9.4   0.0    1.9  2  LIP              Secretory lipase


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   8.8e-17   9.3e-14      21     204 ..      63     244 ..      43     249 .] 0.70

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 8.8e-17
                   --TTSSTTHCHHH..HTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHH.H CS
  Peptidase_S9  21 nirGsggyGeafh..dagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllte.e 114
                   +++G  + G+a +  ++++  l+q  +d f a+  al + +++   r a+ G+S GG++++ ++++ +++ ++a    + + +  +++    + +  
    EHT99134.1  63 DMHGARYNGDAETrlRHFWDILKQ-NIDEFPAIEAALRADDLIADARFAVAGASMGGMTALGIMARYSHIHSVACMMGSGYFMQLSHTL---FPPvV 155
                   455666555543311344445555.4788999999999999************************888888888766666666666666...66655 PP

                   CCCC--TTTCHHHHHHHHHH-CGGG--..---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHH CS
  Peptidase_S9 115 ymewgnpeeneegykelspyspldnvk..aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaF 204
                   +++  ++ +  + +  l+ y+p ++++  a+ plLl hG+aD+ vp+ae+ +l +aL++kg ++ l +   e H +   +     l  l++F
    EHT99134.1 156 VTNEEQKAQFTARMASLADYDPSARLQnlANRPLLLWHGDADEVVPFAETQRLDRALREKGLDAHLTTL-SETHIGH--KITPSGLTALVSF 244
                   5555555556666777777777777778899*****************************999665543.4455332..3333555555555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.1   5.4e-12   5.7e-09       6     123 ..      29     155 ..      24     178 .. 0.78
   2 !   12.7   0.0   5.4e-05     0.057     188     220 ..     183     215 ..     161     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 5.4e-12
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse......gkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyll 95 
                  ++v+ HG++++ + ya +a aLa++Gf  ++ D+  hG           r  ++ +++ +d + a+  +++++   +  ++ + G SmGG++al +++
   EHT99134.1  29 TLVFYHGFTSSKEVYAYFAVALAQAGFRAVMPDADMHGARYngdaetRLRHFWDILKQNIDEFPAIEAALRADDLIAdaRFAVAGASMGGMTALGIMA 126
                  79************************************99888877777777888888888888887788877766677999**************** PP

  Hydrolase_4  96 rypd..kvaglilsaPalkikaklkappll 123
                  ry++  +va ++ s+ ++++ + l +pp++
   EHT99134.1 127 RYSHihSVACMMGSGYFMQLSHTL-FPPVV 155
                  **9944444455555444444443.55555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.4e-05
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgsk 220
                  + ++ Plll hG+aD+vv+ +++++l ++l+ k
   EHT99134.1 183 NLANRPLLLWHGDADEVVPFAETQRLDRALREK 215
                  33448******************9999988876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.4     1e-08   1.1e-05       1     113 [.      28     146 ..      28     166 .. 0.77
   2 ?    3.9   0.0     0.034        36     193     239 ..     174     214 ..     151     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1e-08
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEE..ETTSTTSSSTTTGB...........CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillD..lrGvgySspapacin..........ddygtasvaddldrildalgddkltlvGhSmGG 84 
                    p+lv+ hG++ s +v+a   +a aLa++gf+ +++D  + G  y   a +             d+++     +   r+ d   d ++++ G SmGG
     EHT99134.1  28 PTLVFYHGFTSSKEVYAY--FAVALAQAGFRAVMPDadMHGARYNGDAETRLRhfwdilkqniDEFPA---IEAALRADDLIADARFAVAGASMGG 118
                    78****************..**************9733566666666666555677888877777775...455567799999************* PP

                    HHHHHHHHHHGGGEEEEEEESECSSCCHH CS
  Abhydrolase_1  85 mialayaaeyperVkalvllgaidpaasl 113
                    m+al   a+y + +++++++ ++ +++ l
     EHT99134.1 119 MTALGIMARYSH-IHSVACMMGSGYFMQL 146
                    *********955.6666666664444443 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.034
                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpk 239
                    ++++sa l++  ++      p l+++g+ D +vp  +  +l+++l++
     EHT99134.1 174 DYDPSARLQNLANR------PLLLWHGDADEVVPFAETQRLDRALRE 214
                    33334444444444......**************9888888877665 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.7e-09   3.9e-06       5     183 ..      16     225 ..      12     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.7e-09
         DLH   5 latpkna...kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkv 100
                 +a p+ +   + p+ v  + +   ++  +  +  la++G+ a++Pd    +a   +d++ + r +    ++   ++  d++ a  a+l+++    + ++
  EHT99134.1  16 HAAPAGQrrqRLPTLVFYHGFTSSKEVYAYFAVALAQAGFRAVMPDADMHGARYNGDAETRLRHF----WDI-LKQNIDEFPAIEAALRADDLIADARF 109
                 5555555545889999999998889999999999************9988883333333333333....333.24446777677777888888889*** PP

         DLH 101 gvvGfCmGGalalllaaevpevdaavafYG.................................lspekeleeaakikapilalfgeeDefipadevekl 166
                 +v G  mGG  al + a+   +  ++   G                                    ++    ++ ++ p+l  +g++De++p++e+++l
  EHT99134.1 110 AVAGASMGGMTALGIMARYSHIHSVACMMGsgyfmqlshtlfppvvvtneeqkaqftarmaslADYDPSARLQNLANRPLLLWHGDADEVVPFAETQRL 208
                 ***************999999**************************************999767777777788889********************** PP

         DLH 167 eealkaanvdlelkvYp 183
                 + al++++ d++l   +
  EHT99134.1 209 DRALREKGLDAHLTTLS 225
                 ********999987655 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   7.1e-09   7.5e-06      20     172 ..      23     172 ..      15     234 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 7.1e-09
                 GTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHHTHH..HHHHHHHCSEECCC CS
    Esterase  20 pgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetfltqeL..lplldanfrtapdg 116
                 + +++p++++ +G+t+  +    +++   la+ g     +  v+p+ +            ++  n+ ++   +++++ l+q +  +p ++a +r ++  
  EHT99134.1  23 RRQRLPTLVFYHGFTSSKEVYAYFAVA--LAQAG-----FRAVMPDADMH----------GARYNGDAETRLRHFWDILKQNIdeFPAIEAALRADDLI 104
                 556666666666655555555554444..33332.....33444444444..........55567899999***********97779999999999887 PP

                 ....EEEEEETHHHHHHHHHHHCSTTTCCEEEEE.S--.S-CCHCHHHC......TTCCHHHCC-CCC CS
    Esterase 117 ....ravaGqSmGGlgALilalkhpdrFgsvssf.Spi.vnpsnamWgq......eekeawqendpvl 172
                      avaG+SmGG++AL + +++    + + ++ S++ +++s  +  +      e+k+++ ++ + l
  EHT99134.1 105 adarFAVAGASMGGMTALGIMARYSHIHSVACMMgSGYfMQLSHTLFPPvvvtneEQKAQFTARMASL 172
                 88889*************99999988886554443776234444444335555555555555544444 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   1.7   2.4e-08   2.5e-05       1     139 [.      30     197 ..      30     228 .. 0.52

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.4e-08
                    EEEE--GC.....GCHHHH.HHHHCCTCEEEEE--TTST.....S-GGCS.--HHHC....HHHHHHHCCTT......TTSEEEEEETCHHHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaagvhvlapDlpGhG.....rsdppp.ldledl....adlaalldelaa....gggpvvlvGHSlGGalala 81 
                    +++ HG+ ss+++++   + +al+ ag++ ++pD+  hG     +++++  + ++ l    +++ a+ ++l+a     + ++ + G S+GG+ al 
     EHT99134.1  30 LVFYHGFTSSKEVYA--YFaVALAQAGFRAVMPDADMHGaryngDAETRLrHFWDILkqniDEFPAIEAALRAddliADARFAVAGASMGGMTALG 123
                    5777**********5..44377788889999****76674444333333323332212222333333333333333445568**********8888 PP

                    .HHHCC..EE..EEES-........................----TTTS----TTHH.HHHHTT-CCCCHCCHS-HSCCCCHHH CS
  Abhydrolase_6  82 .aaplalvvg..vlldp...........pp...........talpagllaaalelll.allallrllawlsreplprlfladed 139
                      a++  +++  +++ +           pp            +++++ la++ + ++ + la+++ll w+           d d
     EHT99134.1 124 iMARYSHIHSvaCMMGSgyfmqlshtlfPPvvvtneeqkaqFTARMASLADYDPSARlQNLANRPLLLWHG----------DAD 197
                    65556644444688888788887777765543333333322111111122222222223333444456663..........222 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1     0.008       8.4     101     142 ..     101     146 ..      19     162 .. 0.74
   2 !   15.4   0.0   1.1e-05     0.012     156     214 ..     186     246 ..     165     249 .] 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.008
                    T..--GGGEEEEEETHHHHHHHHHHHT-SS..--SEEEEES---TT CS
  Abhydrolase_2 101 g..ipssriiigGFSqGaalalylaltlpk..klggivafsgalpl 142
                       i   r ++ G S+G++ al  +  +++   ++++++ + ++ l
     EHT99134.1 101 DdlIADARFAVAGASMGGMTALGIMARYSHihSVACMMGSGYFMQL 146
                    1448999999*********999999888876577777775555544 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.1e-05
                    G-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT..--SS--HHHHHHHHHHHH CS
  Abhydrolase_2 156 klpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeg..laHsideeemqdikeflk 214
                    + p l+ Hg+ D+vvp+a  +++  +l++   + +l+++ +   +H+i +  + ++ +f k
     EHT99134.1 186 NRPLLLWHGDADEVVPFAETQRLDRALREKGLDAHLTTLSEthIGHKITPSGLTALVSFFK 246
                    5799*************************9997777766531279****999999998876 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00013      0.14       2      34 ..      30      62 ..      29      77 .. 0.89
   2 !    6.8   0.2    0.0049       5.1      57      85 ..     107     135 ..      86     161 .. 0.76
   3 ?    2.7   0.0     0.091        96      84     128 ..     169     214 ..     148     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
  Abhydrolase_5  2 lifYpGakveaesYaelaeklaksGyevvlvkl 34
                   l+fY G +  +e Ya++a +la++G+  v+   
     EHT99134.1 30 LVFYHGFTSSKEVYAYFAVALAQAGFRAVMPDA 62
                   89**************************99865 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0049
  Abhydrolase_5  57 ekfvvgGhslGGvvasrfaaeeekiegvv 85 
                     +f v+G s+GG+ a  + a+ ++i++v 
     EHT99134.1 107 ARFAVAGASMGGMTALGIMARYSHIHSVA 135
                    469**********9999998888887765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.091
  Abhydrolase_5  84 vvflasYPekdelsels.kkvlsivgteDgvlnvkslekakkflpk 128
                    +  la Y     l++l+  ++l   g+ D+v+++ + ++  + l +
     EHT99134.1 169 MASLADYDPSARLQNLAnRPLLLWHGDADEVVPFAETQRLDRALRE 214
                    56688887677788765156777789**********9998887765 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     7e-06    0.0074      98     128 ..      25      55 ..      11      67 .. 0.87
   2 ?    1.6   0.1     0.074        78     224     244 ..     103     123 ..      93     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7e-06
                  S-EEEEEEE--TT--TTTTHHHHHHHHHTT- CS
  PAF-AH_p_II  98 ekyPlivFsHGLgafRtlYsalcielAskGf 128
                  +++P +vF HG  +++ +Y+ +++ lA  Gf
   EHT99134.1  25 QRLPTLVFYHGFTSSKEVYAYFAVALAQAGF 55 
                  789***************************9 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.074
                  -EEEEEEEEEEETHHHHHHHH CS
  PAF-AH_p_II 224 nldtskvaviGHsFGgAtvik 244
                   +  ++ av+G s Gg t++ 
   EHT99134.1 103 LIADARFAVAGASMGGMTALG 123
                  577899************984 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   4.3e-06    0.0045      20     166 ..     105     236 ..      91     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-06
                 --SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEETTE..EE----B-GGG-EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEE CS
      BAAT_C  20 kkdkigllGiSkGgelalllasflkkisavvlingsavvvegklvykdeskvlpelklsmeklkvnknglldivdvlallkeklaekalipvekakgpi 118
                 +  + ++ G S Gg +al + +++++i+ v ++ gs ++++  +        +p++ + +e+ k +       +++  l   + ++ a++    a+ p+
  EHT99134.1 105 ADARFAVAGASMGGMTALGIMARYSHIHSVACMMGSGYFMQLSHT------LFPPVVVTNEEQKAQFT-----ARMASLA--DYDPSARL-QNLANRPL 189
                 566789********************************9954433......57777777766432222.....2222222..22233223.25689999 PP

                 EEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---ST CS
      BAAT_C 119 llvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepP 166
                 ll  g  D+++p +e    + + L+++g + +++ l+    GH i+p 
  EHT99134.1 190 LLWHGDADEVVPFAETQ-RLDRALREKGLDAHLTTLSETHIGHKITPS 236
                 99999999999998865.899999999999999999999999999985 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.8e-06    0.0029      14     113 ..      24     130 ..      14     172 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-06
  Chlorophyllase2  14 ageYpvllflhGylllnslYsqlLkhiashgfivvapqlykvaeada.keiksaakvlnWlakgLes..vlp.....eevepdlsklalsgHSr 99 
                        + p l+f hG++  +++Y     ++a  gf +v p   +   +   +     ++  + l++++++  +++     +++ +d  ++a++g S 
       EHT99134.1  24 RQRLPTLVFYHGFTSSKEVYAYFAVALAQAGFRAVMPDADMHGARYNgDAETRLRHFWDILKQNIDEfpAIEaalraDDLIAD-ARFAVAGASM 116
                      56789********************************8766433333233344555667777776652233333334444444.589******* PP

  Chlorophyllase2 100 Ggktafalalgkak 113
                      Gg ta+ ++  +++
       EHT99134.1 117 GGMTALGIMARYSH 130
                      ****9998877766 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.3   1.3e-05     0.014       8     197 ..      19     214 ..      14     225 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
  Esterase_phd   8 ppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqsl...r..anaqkcwnwykdtdraGrGeaavvvalvdalvdehrvdaarv 99 
                   p G+rr  +p +v+ hG t s e +a  +   +la + G+  + p+  +   r   +a+   + + d  ++   e  ++ a   al  +  +  ar 
    EHT99134.1  19 PAGQRRQRLPTLVFYHGFTSSKEVYAYFA--VALA-QAGFRAVMPDADMhgaRynGDAETRLRHFWDILKQNIDEFPAIEA---ALRADDLIADARF 109
                   77*********************999754..4565.568888888865411131135777777777777777777666655...4444566667788 PP

  Esterase_phd 100 yvaGlsaGaaladllalhypdvf.aavalhsGlalGeaadvisaldvmrrGlrqapa......aavdalveagaypglpalvvqGdadtvvavknae 189
                    vaG s G+  a  +   y      a  + sG  +  +      + v  +  + + +      a  d  +        p l+ +Gdad+vv   +++
    EHT99134.1 110 AVAGASMGGMTALGIMARYSHIHsVACMMGSGYFMQLSHTLFPPVVVTNEEQKAQFTarmaslADYDPSARLQNLANRPLLLWHGDADEVVPFAETQ 206
                   8888888887775555555544314555666666655555544444444443333330000003333333444566779************999999 PP

  Esterase_phd 190 slvvalrr 197
                   +l  alr+
    EHT99134.1 207 RLDRALRE 214
                   99888875 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   6.7e-05      0.07      45     148 ..      26     135 ..      14     144 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.7e-05
  Chlorophyllase  45 typvvlflhGtllsnkfyskllnhiashGfivvaPqlykllp...PsaqdeidsaaevieWlsegl......kavlptsveanlsklalvGhsrG 130
                       p ++f hG++ s + y+ +   +a  Gf  v P      +    +a   + +  ++   l +++      +a l+ +      ++a++G s G
      EHT99134.1  26 RLPTLVFYHGFTSSKEVYAYFAVALAQAGFRAVMPDADMHGArynGDAETRLRHFWDI---LKQNIdefpaiEAALRADDLIADARFAVAGASMG 117
                     56899******************************96544333334444445444444...44444000000444544433344689******** PP

  Chlorophyllase 131 Gktafalalgysseltfs 148
                     G ta+ +  +ys    ++
      EHT99134.1 118 GMTALGIMARYSHIHSVA 135
                     ***********9544444 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0095        10      73     114 ..      16      59 ..       4      80 .. 0.70
   2 ?    6.1   0.2    0.0036       3.8     161     204 ..      93     137 ..      83     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0095
                 EEEES..SSSSEEEEEEEE-TT--GGG.HHHHHHHHHTT-EEEE CS
        AXE1  73 lvlPk.ekeeklPavvefhGYegsrge.ihdllnyaaaGyavvv 114
                  + P+ +++++lP++v +hG+++s+   +   +  a aG+  v+
  EHT99134.1  16 HAAPAgQRRQRLPTLVFYHGFTSSKEVyAYFAVALAQAGFRAVM 59 
                 55665235678***********9965404556777778876654 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0036
                 HHHHH.HTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SEEEEE CS
        AXE1 161 lveiv.aslpevDeeRvavlGasqGGalalavaalekrikavvad 204
                 ++e++ ++ + + + R av+Gas GG  al + a  ++i++v++ 
  EHT99134.1  93 AIEAAlRADDLIADARFAVAGASMGGMTALGIMARYSHIHSVACM 137
                 566541445678999****************99999999998875 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   1.2e+03     159     195 ..      86     122 ..      82     142 .. 0.83
   2 ?   10.5   0.0   0.00024      0.25     282     328 ..     183     229 ..     158     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
     DUF2920 159 aAlDiinalkdlvkrfpkeadlpviliGgsyGGYlal 195
                 + +D   a++ +++     ad    + G+s GG  al
  EHT99134.1  86 QNIDEFPAIEAALRADDLIADARFAVAGASMGGMTAL 122
                 5678888888888888888999999999999998775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
     DUF2920 282 knkntiyvsyHsekDklapaeeKiqlakilkklgfdvelelidesdi 328
                 +  n   +  H + D+++p  e + l ++l+++g+d++l+ + e++i
  EHT99134.1 183 NLANRPLLLWHGDADEVVPFAETQRLDRALREKGLDAHLTTLSETHI 229
                 4455677899********************************99988 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035      0.36     150     197 ..     148     228 ..      25     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
        FSH1 150 k..........................yeeyy.eedkiqtptLhvlGelDtvvdeerseaLaeafkns......skvlkHp 197
                 +                          y++    ++  + p L  +G++D+vv+ +++++L +a +++      +++ + +
  EHT99134.1 148 HtlfppvvvtneeqkaqftarmasladYDPSArLQNLANRPLLLWHGDADEVVPFAETQRLDRALREKgldahlTTLSETH 228
                 3333344444444444444444444445555544666699*********************99999877774443333444 PP

>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.55   5.8e+02      53      82 ..      92     118 ..      37     127 .. 0.56
   2 ?    9.4   0.0   0.00058      0.61     212     261 ..     183     230 ..     170     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.55
         LIP  53 dsiraalksekvtgiksdakvalwGYSgGs 82 
                  +i aal++ ++     da+ a+ G S G+
  EHT99134.1  92 PAIEAALRADDL---IADARFAVAGASMGG 118
                 344555544443...345666666666665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00058
         LIP 212 avPqiPvlvyhgvidelipikdakklaknwcdkgiaslefaedlssgHla 261
                  + + P+l+ hg  de++p+ ++++l +   +kg         ls+ H+ 
  EHT99134.1 183 NLANRPLLLWHGDADEVVPFAETQRLDRALREKGLD--AHLTTLSETHIG 230
                 56788**********************999999963..222334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 1872.77
//
Query:       EHT99135.1  [L=643]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-70  237.0   0.4    2.5e-70  237.0   0.4    2.8  3  Cache_3-Cache_2  Cache 3/Cache 2 fusion domain
    1.2e-46  158.7  40.5    3.9e-45  153.7  22.6    3.2  3  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si
    7.3e-28   97.1   1.0    3.4e-27   95.0   0.4    2.5  2  sCache_3_3       Single cache domain 3
    2.6e-11   43.8   0.1    2.6e-11   43.8   0.1    2.8  3  sCache_3_2       Single cache domain 3
    1.2e-09   38.4   1.6    7.6e-08   32.6   0.1    4.0  2  HAMP             HAMP domain
    7.3e-09   35.8   0.3    7.3e-09   35.8   0.3    3.6  3  dCache_1         Cache domain
     0.0004   19.7   1.7    0.00066   18.9   1.7    1.3  1  PLU-1            PLU-1-like protein
  ------ inclusion threshold ------
       0.05   13.7   1.5        0.3   11.2   0.2    2.5  2  DUF848           Gammaherpesvirus protein of unknown function
       0.17   12.1   5.9         22    5.3   0.0    3.7  4  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
       0.19   11.8  13.7       0.28   11.2   0.3    3.3  3  DUF1664          Protein of unknown function (DUF1664)
       0.52   10.8   8.2        6.1    7.4   0.2    3.7  3  Spectrin         Spectrin repeat
       0.64   10.1   7.4       0.61   10.2   0.2    3.8  3  COG2             COG (conserved oligomeric Golgi) complex com
       0.81    9.7  16.6       0.43   10.6   4.0    3.7  3  Laminin_II       Laminin Domain II
        1.1    9.2   5.3       0.39   10.7   1.1    2.3  2  DUF2887          Protein of unknown function (DUF2887)
        1.2    8.9   7.9       0.14   12.0   2.5    2.2  3  DUF1465          Protein of unknown function (DUF1465)
        1.8    7.7   8.0        2.9    7.0   0.5    2.2  2  ISG65-75         Invariant surface glycoprotein
        1.8    8.7   6.8         26    5.0   0.9    3.6  3  ASL_C            Adenylosuccinate lyase C-terminal
        4.3    7.5   8.9       0.29   11.3   0.7    2.8  3  Fib_alpha        Fibrinogen alpha/beta chain family
        5.5    7.3  25.0        0.4   11.0   0.2    5.3  4  DUF948           Bacterial protein of unknown function (DUF94
          6    5.9  14.2       0.76    8.8   0.7    3.1  3  APG17            Autophagy protein Apg17
        9.2    5.9   6.8        9.9    5.8   0.3    2.9  2  YkyA             Putative cell-wall binding lipoprotein


Domain annotation for each model (and alignments):
>> Cache_3-Cache_2  Cache 3/Cache 2 fusion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.4     3e-73   2.5e-70       2     286 ..      36     312 ..      35     317 .. 0.96
   2 ?   -0.7   1.7      0.79   6.8e+02      15      88 ..     421     495 ..     405     503 .. 0.73
   3 ?   -2.0   2.1         2   1.7e+03      35      92 ..     566     622 ..     534     634 .. 0.50

  Alignments for each domain:
  == domain 1  score: 237.0 bits;  conditional E-value: 3e-73
  Cache_3-Cache_2   2 esakeevnklieeelekevedlaetletqdellrekverdlnvfakllsnewrvdnqetvkvgevslPklklggewlnknfelvdefteltgat 95 
                      ++a++++++l+ +++ ++v++++e++++++ +l+++v +++++f + l+++++ d++ +++vge+s+P+l +g ++ln +   vd+ft+ t a+
       EHT99135.1  36 QNASRQLESLAMDDMVNQVQGITEMASMFNATLTQEVGNYTQLFVSFLPKRFSRDETSRIQVGEFSTPTLRAGLKTLNLDQIAVDDFTDRTSAV 129
                      67899***************************************************************************************** PP

  Cache_3-Cache_2  96 atvFqrmnddllRVsTsvkkedGkraigtylpasspvykavlagetYvGrakvfgkwYvTaYePikdadgkViGilyVgvdqsealkslrkelk 189
                      at+F+r++d ++RVsTs+kkedG+raigt l+++s + k+v +ge Y+G a++fg  Y+T+Y+P+kd++g+Vi+i++Vgv++++ +  +r++  
       EHT99135.1 130 ATIFVRDGDNFIRVSTSLKKEDGSRAIGTQLDRTSGAWKKVTQGEIYRGLATLFGHRYITQYQPVKDDSGTVIAIIFVGVQIDKQYGLMREKVL 223
                      ********************************************************************************************** PP

  Cache_3-Cache_2 190 klkvGktGylyvldgkgdkk.gkliihptlkgknvldlkdadgesvvkkllkkksgsleyelkkdekgreklavftyfepwdWvivasvyedef 282
                      + ++G++G++yvl+g+ ++  g+++++++ +gk    +   +g  v+  +l +++g+ + +     +g++k+ + ++ ++w+W++v++v++d +
       EHT99135.1 224 ARRLGDSGHFYVLNGTPGAMqGQYLFDKQAEGKRPDWQ---EG--VLNAMLTQPEGVQQAD----IDGETKMLAWQQLPGWNWIVVGEVNRDSL 308
                      ****************99989**************877...55..6***********9995....55*************************99 PP

  Cache_3-Cache_2 283 qeev 286
                      ++ v
       EHT99135.1 309 LAPV 312
                      8765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.79
  Cache_3-Cache_2  15 elekevedlaetletqdellrekverdlnvfakllsnewrvdn.qetvkvgevslPklklggewlnknfelvdef 88 
                      +++++ve   + +e +  +++  ++++ ++++   + +  vdn ++tv+ +  ++  ++++++ ++  +  ++++
       EHT99135.1 421 RQASSVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVDNgNQTVTRSVNTMSAINVSSQSIADITHVIESI 495
                      456677777788888888999999999999999988877777634566666666777888888888777776665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
  Cache_3-Cache_2  35 rekverdlnvfakllsnewrvdnqetvkvgevslPklklggewlnknfelvdeftelt 92 
                        ++ +  + +++l+ + ++v  q++++  ++    ++  +++ ++n+elv+++ +++
       EHT99135.1 566 MSEIVTHIEQVQALMGE-INVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTA 622
                      33444444444444444.4444444333333333344444555577777777766665 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.9   2.5e+03      15      31 ..      44      60 ..      32      76 .. 0.56
   2 !   14.6   4.6   2.6e-05     0.022      80     168 ..     365     450 ..     360     454 .. 0.73
   3 !  153.7  22.6   4.6e-48   3.9e-45       4     171 ..     454     607 ..     451     608 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.9
                HHHHHHHHHHHHHHHHH CS
   MCPsignal 15 gkevanvvkqmeeieks 31
                   ++++v+q++ i++ 
  EHT99135.1 44 SLAMDDMVNQVQGITEM 60
                34455555555555544 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  80 LAersaqaakeiealiieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveev 168
                 LA+   +   ++ ++i  i ++ ++ v+ +  + q+++ g+++++ +    ++i+e++++ a++v+e +a+ e+  a++e++++++ + 
  EHT99135.1 365 LATTRHDEVGQLINAINGIGEGLEKIVAQVRRAAQEISDGTDTIAASS---HNISEQIGRQASSVEETSASMEQFGATVEHTADSLRQA 450
                 555555555555566666677777777777777777777777776655...57889999999999999999999999999999988775 PP

  == domain 3  score: 153.7 bits;  conditional E-value: 4.6e-48
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH....... CS
   MCPsignal   4 aeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkei 102
                 + eas+  ++g+++v   v++m +i+ ss+ i+di++Vi++ia+QTN+LALNAa+EAARAGe+GrGFaVVA EVr+LA+rsaqaakei++li       
  EHT99135.1 454 VAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIESIAFQTNILALNAAVEAARAGEHGRGFAVVAAEVRALAQRSAQAAKEIDTLI------- 545
                 56899999************************************************************************************....... PP

                 .......HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 103 ndsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                          + ++v+eg  l e+t++a++eiv+++++v++l+ ei++a+++q+a+i  vn a++++++ 
  EHT99135.1 546 -------ATSIRHVAEGHALSEQTRDAMSEIVTHIEQVQALMGEINVAAQQQTAGIGLVNLAMNQISQA 607
                 .......78999*****************************************************9986 PP

>> sCache_3_3  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.5   5.5e+03      30      55 ..      29      54 ..      21      69 .. 0.80
   2 !   95.0   0.4     4e-30   3.4e-27       3     101 ..     112     215 ..     110     221 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.5
  sCache_3_3 30 iaTtvkkedgeravGtklseevaeav 55
                + T ++ ++ +r +++ + ++ +++v
  EHT99135.1 29 VLTLIQSQNASRQLESLAMDDMVNQV 54
                67888899999999999988888877 PP

  == domain 2  score: 95.0 bits;  conditional E-value: 4e-30
  sCache_3_3   3 ingntelvDqikeltggevTiFl....ddvriaTtvkkedgeravGtklsee..vaeavlkkGetysgraeilgkkyltaYePlkdadgkviGmlfvGl 95 
                 +n ++  vD++++ t + +TiF+    +++r++T++kkedg+ra+Gt+l+++  ++ + +++Ge y+g a+++g++y+t Y+P+kd++g+vi ++fvG+
  EHT99135.1 112 LNLDQIAVDDFTDRTSAVATIFVrdgdNFIRVSTSLKKEDGSRAIGTQLDRTsgAW-KKVTQGEIYRGLATLFGHRYITQYQPVKDDSGTVIAIIFVGV 209
                 5668889***************8899999********************9999555.5558************************************** PP

  sCache_3_3  96 peeevq 101
                 ++++  
  EHT99135.1 210 QIDKQY 215
                 998765 PP

>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1     3e-14   2.6e-11      38     136 ..     112     219 ..      94     222 .. 0.84
   2 ?   -2.5   0.0       5.9     5e+03      58      78 ..     401     423 ..     378     451 .. 0.62
   3 ?   -1.4   0.5       2.7   2.3e+03      11      24 ..     539     552 ..     456     597 .. 0.65

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 3e-14
  sCache_3_2  38 sglqalv..ddvrritgvdyvvitDeeg..rvlah...pdpa.evgrkl.sgpataaalkagrayvgtvtgtlgpslrvklPvfdadgrviGivsvGvk 127
                  +l++++  d + r++ v+++++ D +   rv+++    d++ ++g++l + +++ + +++g++y+g +t+ + ++++ + Pv+d++g vi+i+ vGv+
  EHT99135.1 112 LNLDQIAvdDFTDRTSAVATIFVRDGDNfiRVSTSlkkEDGSrAIGTQLdRTSGAWKKVTQGEIYRGLATLFGHRYITQYQPVKDDSGTVIAIIFVGVQ 210
                 4455555555566777888*********999999965555559*******************************************************9 PP

  sCache_3_2 128 qdeisaelr 136
                  d+ ++ +r
  EHT99135.1 211 IDKQYGLMR 219
                 998766655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
  sCache_3_2  58 itDeegrvlahpdpa..evgrkl 78 
                 i D  +++ a+++    ++gr+ 
  EHT99135.1 401 ISDGTDTIAASSHNIseQIGRQA 423
                 45555566666554444666555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.7
  sCache_3_2  11 eeralalatsvags 24 
                 +e  + +ats+   
  EHT99135.1 539 KEIDTLIATSIRHV 552
                 22223333333333 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   8.9e-11   7.6e-08       3      51 ..     339     387 ..     337     389 .. 0.92
   2 ?    2.0   0.1      0.33   2.8e+02      11      24 ..     392     406 ..     391     430 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.9e-11
                 HHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                  r+i+rPL+++   a++ aaG+l ++l +++ DE+G+L+ a+N   + L
  EHT99135.1 339 RRAITRPLQQVIHLAEQYAAGNLLVHLATTRHDEVGQLINAINGIGEGL 387
                 699****************************************766655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.33
                 HHHHHHHHHHTTT.B CS
        HAMP  11 rrLaraarriaaG.d 24 
                  +++raa++i++G d
  EHT99135.1 392 AQVRRAAQEISDGtD 406
                 5899*******9962 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.3   8.6e-12   7.3e-09      71     248 ..      90     301 ..      29     302 .. 0.65
   2 ?    2.5   1.6      0.12     1e+02       8      56 ..     426     484 ..     387     513 .. 0.68
   3 ?    3.9   0.8     0.046        39       9      88 ..     528     605 ..     521     631 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 8.6e-12
    dCache_1  71 n.................................pdisgv.ylvdadGqviassdpssppnleg.....tddpadrdwykealaggggkpvisdpyvdq 130
                 +                                 +  s+v +++ +dG+++ + ++s + +  g     t+ ++ ++ +k++ +g+  ++    + +  
  EHT99135.1  90 DetsriqvgefstptlraglktlnldqiavddftDRTSAVaTIFVRDGDNFIRVSTSLK-KEDGsraigTQLDRTSGAWKKVTQGE--IYRGLATLF-- 183
                 35555555555555555555555555555532221122333555577777665444443.33335799****************99..776666666.. PP

    dCache_1 131 tggkpvitiavpiyddsgkfiGvlaadldldn...lqd.llsniklgetgyvfivds.....dGniiahpd.....kdllgknlrdelkaqealekala 215
                   g+ +it   p+ ddsg++i ++ + +++d    l++  +   +lg++g+++++++     +G+++++++     +d+      +         +a+ 
  EHT99135.1 184 --GHRYITQYQPVKDDSGTVIAIIFVGVQIDKqygLMReKVLARRLGDSGHFYVLNGtpgamQGQYLFDKQaegkrPDWQ-----EG------VLNAML 269
                 ..99******************9988888887558665588888**********8874455579*****99766544443.....22......456777 PP

    dCache_1 216 kiesgvssvklngeeylvayapiptglgWylvv 248
                    +gv++ +++ge++++a++++p+ ++W++v 
  EHT99135.1 270 TQPEGVQQADIDGETKMLAWQQLPG-WNWIVVG 301
                 78899999****************6.*****96 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
    dCache_1   8 eeqllglaeqlanniedvldslenlaetlasnpslqdlleepnra...............neas 56 
                  e++++++eq ++ +e + dsl++ + ++a+ +s++d     n +               + +s
  EHT99135.1 426 VEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVD-----NGNqtvtrsvntmsainvSSQS 484
                 4566677888888888888888888888888777765.....3212234444444444444444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.046
    dCache_1   9 eqllglaeqlanniedvl.dslenlaetlasnpslqdlleepnraneasreslqallksil.ksnpdisgvylvdadGqvia 88 
                 + l + + q+a++i++ + +s++  ae  a +++ +d+++e+ +     +e++qal+ +i+ ++ +   g+ lv+   ++i+
  EHT99135.1 528 RALAQRSAQAAKEIDTLIaTSIRHVAEGHALSEQTRDAMSEIVT----HIEQVQALMGEINvAAQQQTAGIGLVNLAMNQIS 605
                 567788899*********777*******************9976....8999999999988677778888888886665555 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.7   7.8e-07   0.00066     100     283 ..     425     630 ..     343     640 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.8e-07
       PLU-1 100 dlpei.eqLkelleeieefqkkarellse.....esedssieeleklieeGksfnvelpeleeLkkvleqlkWleevrevreek..kq.........lt 181
                 +++e+ ++++++   +e+    +r+++s      +  d+ ++++   ++  + +nv  ++++++++v+e + +  ++ ++++    ++         + 
  EHT99135.1 425 SVEETsASMEQFGATVEHTADSLRQAMSLvaeasSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIESIAFQTNILALNAAVeaARagehgrgfaVV 523
                 555554555555555555555555555554433324456789999*******************************7777432222224455677889* PP

       PLU-1 182 leevkeLieeGeelaippekeellaelqelleaaekweekakelLeareklsleeLeallneaq........eipvslpslaaleeilkkarewqrkve 272
                   ev+ L ++  + a   e ++l+a     +++++++ e+ ++ ++     ++e+++al+ e++         i ++   + +++++ ++  e+ +++e
  EHT99135.1 524 AAEVRALAQRSAQAAK--EIDTLIATSIRHVAEGHALSEQTRDAMS-EIVTHIEQVQALMGEINvaaqqqtaGIGLVNLAMNQISQATHQNSELVTQAE 619
                 *********9988883..449************************9.*************************9999999******************** PP

       PLU-1 273 elikssqdaae 283
                 +  +s++d+++
  EHT99135.1 620 QTAQSLSDKGH 630
                 **999876544 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.57   4.9e+02      71     131 ..     368     429 ..     343     450 .. 0.70
   2 ?   11.2   0.2   0.00035       0.3      43     124 ..     508     589 ..     464     597 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.57
      DUF848  71 akkkelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeeyqeg.essetsipDt 131
                 +++ e+ +L++      + +e+++ +v  + +e+s   d++ +  ++ +e+ + + +s+++t
  EHT99135.1 368 TRHDEVGQLINAINGIGEGLEKIVAQVRRAAQEISDGTDTIAASSHNISEQiGRQASSVEET 429
                 44555555555444555667788888888888888888888888877777777777777665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00035
      DUF848  43 rkalrsleqlkrtkeikalveavdteieakkkelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeeyqegess 124
                  +a r+ e+ +  + + a v+a+ ++  +  ke+++L++   ++va+  +L ++  ++  e+  +++++++   e +   ++
  EHT99135.1 508 VEAARAGEHGRGFAVVAAEVRALAQRSAQAAKEIDTLIATSIRHVAEGHALSEQTRDAMSEIVTHIEQVQALMGEINVAAQQ 589
                 4455555666667778999**************************************************9977776655444 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.026        22      23      95 ..     341     413 ..     337     419 .. 0.82
   2 ?    3.0   0.0      0.14   1.2e+02      48      94 ..     408     451 ..     404     463 .. 0.67
   3 ?    2.9   0.1      0.15   1.3e+02      44      98 ..     526     584 ..     521     595 .. 0.62
   4 ?    5.2   0.5     0.029        25      15      93 ..     557     635 ..     545     639 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.026
                   CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  23 edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkelea 95 
                   + +  ++++++l e+  + +  +  + +++ e+++ I  +   +e  e+++a+v+   +e+++ +++ ++ + 
    EHT99135.1 341 AITRPLQQVIHLAEQYAAGNLLVHLATTRHDEVGQLINAINGIGEGLEKIVAQVRRAAQEISDGTDTIAASSH 413
                   5666778888888888888888888999999999999999999999999999999999999998887776655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.14
                   HHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  48 lqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkele 94 
                   + a + ++s++Ig+   +    ee  a++++ ++ ++++ + l+++ 
    EHT99135.1 408 IAASSHNISEQIGRQASSV---EETSASMEQFGATVEHTADSLRQAM 451
                   5566778889999888765...5566666666666666666666654 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.15
                   HHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  44 eleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaele 98 
                   e+ +l +++ +++keI  +++      ++  +l +++++   e+ +  +++++l  e++
    EHT99135.1 526 EVRALAQRSAQAAKEIDTLIATSirhvAEGHALSEQTRDAMSEIVTHIEQVQALMGEIN 584
                   66677777888888888888877666655555555555555555555555555555444 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.029
                   HHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  15 keklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkel 93 
                   + + ++R + ++ v ++ ++++ + e++v++++  a    ++ ++ +++++  + +el+ ++++  + l+++   l++l
    EHT99135.1 557 ALSEQTRDAMSEIVTHIEQVQALMGEINVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTAQSLSDKGHHLTQL 635
                   5567889999999999999999999999999999999999999999999888889999999999999999988877765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00033      0.28      39     107 ..     376     444 ..     365     456 .. 0.86
   2 ?    4.1   0.1     0.054        46      42     110 ..     425     492 ..     423     503 .. 0.64
   3 ?    6.7   3.2    0.0081       6.9      40     112 ..     563     638 ..     522     642 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                 l +a++ +++ le++ ++++++ +++s+  d++ ++  + +e +   ++ v+e +  ++++g  ve+  
  EHT99135.1 376 LINAINGIGEGLEKIVAQVRRAAQEISDGTDTIAASSHNISEQIGRQASSVEETSASMEQFGATVEHTA 444
                 77999************************9999999999999999999999999999999998887654 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.054
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeav 110
                  ve+ s ++eq+ +++++t + L + +  v +    + +  + +++ v++++  ++  ++ +  + +++
  EHT99135.1 425 SVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVDNGNQTVTRSVNTMSA-INVSSQSIADITHVI 492
                 57888999999999999999999999888877666555555555555555432.223333333333333 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0081
     DUF1664  40 sdavesvskqleqvs...eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 +da++++ +++eqv+    +++ + ++ ++ i  v+  +++ ++++++ +e vt++++  ++++++ +++ ++v+ 
  EHT99135.1 563 RDAMSEIVTHIEQVQalmGEINVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTAQSLSDKGHHLTQLVSV 638
                 4555555555555552226888888899999999999999999999999999999999999999998888888875 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.078        67      17      88 ..     408     481 ..     392     490 .. 0.81
   2 ?    7.4   0.2    0.0072       6.1      44      96 ..     528     580 ..     520     584 .. 0.90
   3 ?    2.1   0.4       0.3   2.6e+02      45      77 ..     603     635 ..     585     638 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.078
                 HHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHTTHTTHHHHHHHHHHHHHH CS
    Spectrin  17 ieekeellssedlgkdleevqallkkhkaleaelaaqqervkaln...elaeklldeghsaseeieerleelner 88 
                 i      + se++g++ ++v++    ++++ a+++   + +++ +   + a++++d+g ++  +  ++++++n  
  EHT99135.1 408 IAASSHNI-SEQIGRQASSVEETSASMEQFGATVEHTADSLRQAMslvAEASSIVDNGNQTVTRSVNTMSAINVS 481
                 55554455.8889999999999999*********99999999999999999999999999999999999999865 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  44 kaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkela 96 
                 +al +  a++ +++++l +++ + ++egh  se++++ ++e+ ++ e++++l+
  EHT99135.1 528 RALAQRSAQAAKEIDTLIATSIRHVAEGHALSEQTRDAMSEIVTHIEQVQALM 580
                 677777888999999999*******************************9886 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHH CS
    Spectrin  45 aleaelaaqqervkalnelaeklldeghsasee 77 
                 ++ +   ++ e v++ +++a++l d+gh+ ++ 
  EHT99135.1 603 QISQATHQNSELVTQAEQTAQSLSDKGHHLTQL 635
                 556667788888999999999999999997765 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00071      0.61      59     126 ..     375     444 ..     341     451 .. 0.75
   2 ?    2.1   0.1      0.23     2e+02      69     123 ..     438     492 ..     428     497 .. 0.77
   3 ?    0.4   0.6      0.77   6.5e+02      74     108 ..     558     592 ..     552     622 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00071
        COG2  59 slSghLvglqeeleevesplaaarkkvesvreklsereeeveskl.eeakeleekrellkll.lkldevv 126
                 +l ++  g+ e le++  ++ +a +++++ ++ +++ ++++++++ ++a+++ee++++++     +++++
  EHT99135.1 375 QLINAINGIGEGLEKIVAQVRRAAQEISDGTDTIAASSHNISEQIgRQASSVEETSASMEQFgATVEHTA 444
                 56677889999*********************************95578889999877765413445555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.23
        COG2  69 eeleevesplaaarkkvesvreklsereeeveskleeakeleekrellklllkld 123
                 + +e    +l +a++ v ++ + +++  ++v+  ++  ++++  ++++ ++  ++
  EHT99135.1 438 ATVEHTADSLRQAMSLVAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVI 492
                 5667777889999999999999************999999988777666555554 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.77
        COG2  74 vesplaaarkkvesvreklsereeeveskleeake 108
                 ++ +   a++++   +e++++ + e++   +++++
  EHT99135.1 558 LSEQTRDAMSEIVTHIEQVQALMGEINVAAQQQTA 592
                 55667778888888888888888888887777764 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.9   1.6e+03      59      94 ..      37      74 ..      31      99 .. 0.64
   2 ?   10.6   4.0    0.0005      0.43      13      93 ..     413     493 ..     375     512 .. 0.75
   3 ?    4.0   2.6     0.056        48       5      73 ..     566     627 ..     525     640 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.9
                XXXXXX--TT.TTTGGGHHHHHHHHHH....HHHHHHH CS
  Laminin_II 59 rsvkkLekla.pqLldklkelkqleeasss.lsdnise 94
                +++++Le la ++++++++ + +  +  ++ l +++ +
  EHT99135.1 37 NASRQLESLAmDDMVNQVQGITEMASMFNAtLTQEVGN 74
                56666666543566666666666665555556666654 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0005
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHH CS
  Laminin_II  13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnis 93 
                  ++ eq+   +  +e+t+++++++ ++ve+t + +++a+  +++A++ v + ++++ + ++ ++ ++  ++  + + + i+
  EHT99135.1 413 HNISEQIGRQASSVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIE 493
                 444455555566788888888888888888888888888888888888888888888888887777766666554554444 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.056
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGG CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLld 73 
                 ++e+   +++v++ + ++++  ++  + +  +n  ++++ +  ++ ++ + +A++  +        L d
  EHT99135.1 566 MSEIVTHIEQVQALMGEINVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTAQS-------LSD 627
                 33333334444444444444444444444444444444444444444444444433333.......333 PP

>> DUF2887  Protein of unknown function (DUF2887)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       3.1   2.7e+03     132     160 ..      18      46 ..      14      71 .. 0.78
   2 ?   10.7   1.1   0.00046      0.39     116     180 ..     571     636 ..     551     642 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
     DUF2887 132 eeelslglalvkLvveeeeeaiekarqLl 160
                  ++ s+g+ l+ L++ ++++a ++ ++L 
  EHT99135.1  18 LTSVSVGVLLLVLTLIQSQNASRQLESLA 46 
                 56778999999999999999999888875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00046
     DUF2887 116 leservkriYLdeLeeeeelslglalvkLvveeeeeaiekarqLlerakqeledeeeq.rklleli 180
                  + e+v+ +  +    +++++ g++lv+L +++ ++a+++  +L+++a+q++++ + + ++l +l+
  EHT99135.1 571 THIEQVQALMGEINVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTAQSLSDKgHHLTQLV 636
                 445566666666666788999***************************998877554314556665 PP

>> DUF1465  Protein of unknown function (DUF1465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.6   3.1e+03     101     149 ..     373     421 ..     355     425 .. 0.73
   2 ?   12.0   2.5   0.00017      0.14      15     151 ..     448     584 ..     438     587 .. 0.88
   3 ?   -3.0   0.1       6.6   5.6e+03      95     121 ..     609     635 ..     600     638 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.6
                 -----HHHHHHHHHHHHHHHHHHHHHHHHHT-SSXXXX.XXXXXXXXXX CS
     DUF1465 101 vaeLpeelqeLierserLyervrrLdrelreeaeaaeaaenpvaeqler 149
                 v +L ++++ + e  e++ ++vrr  +e+++ +++ +a++++++eq+ r
  EHT99135.1 373 VGQLINAINGIGEGLEKIVAQVRRAAQEISDGTDTIAASSHNISEQIGR 421
                 5555555555555567788888888899998888888888888888865 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHHTTHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-TTTTSSSS-------...-----------HHHHHHH CS
     DUF1465  15 regmdLveetaayldgegreeskalsreaalayaseSlrlTTRLmqlasWLLlqRAveegelseeqaasekkrvklaaae.asdaeavaeLpeelqeLi 112
                 r++m+Lv e+++  d+  ++  ++++  +a+ ++s+S+   T +++ ++   +  A+++  ++++ a ++++  +  aae +  a+  a+  +e+ +Li
  EHT99135.1 448 RQAMSLVAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIESIAFQTNILALNA-AVEAARAGEHGRGFAVVAAEvRALAQRSAQAAKEIDTLI 545
                 89***********************************************9999999876.588889999999999888888999999999999999999 PP

                 HHHHHHHHHHHHHHHHHHT-SSXXXX.XXXXXXXXXXXX CS
     DUF1465 113 erserLyervrrLdrelreeaeaaeaaenpvaeqlerLe 151
                 ++s r  +    L ++ r+  ++  ++ ++v++++  ++
  EHT99135.1 546 ATSIRHVAEGHALSEQTRDAMSEIVTHIEQVQALMGEIN 584
                 999999999899999988888888888888888887776 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.6
                 -----------HHHHHHHHHHHHHHHH CS
     DUF1465  95 asdaeavaeLpeelqeLierserLyer 121
                 ++++e v++ ++++q+L ++ ++L + 
  EHT99135.1 609 HQNSELVTQAEQTAQSLSDKGHHLTQL 635
                 566666666666667666666666654 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.5    0.0034       2.9      52     136 ..     387     471 ..     376     486 .. 0.68
   2 ?    4.1   1.8     0.027        23      44     124 ..     546     627 ..     518     636 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0034
    ISG65-75  52 adyllketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkakea 136
                  ++++++++++++ i + ++ + + + ++ + + ++    + t++ +e+   ++e + +  ++a + +++a ++  +  ++++++
  EHT99135.1 387 LEKIVAQVRRAAQEISDGTDTIAASSHNISEQIGRQASSVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVDNGNQTVTRS 471
                 5667777777777777777777777777777777766666666666666666666666666666666666666666666666555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.027
    ISG65-75  44 adkvreetady.llketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkale 124
                 a+++r  ++ + l ++t+d+++ i +++e+v++   +++   +++ +   l + +++++ +a  +  + +++a+++a+   +
  EHT99135.1 546 ATSIRHVAEGHaLSEQTRDAMSEIVTHIEQVQALMGEINVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTAQSLSD 627
                 5666665555415678999999999999999999999998888888888888888888888888888888888888876655 PP

>> ASL_C  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.3   1.1e+03      21      55 ..     374     408 ..     371     411 .. 0.83
   2 ?    4.5   0.3     0.042        36      12      62 ..     411     461 ..     403     503 .. 0.84
   3 ?    5.0   0.9      0.03        26      16      62 ..     576     622 ..     559     633 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHCCEEE-HHHHHHHHHT-GGGG CS
       ASL_C  21 ahslialksllkglsklevneealaedLdenwevl 55 
                 ++ + a++ + +gl+k+ ++ +++a+++ +    +
  EHT99135.1 374 GQLINAINGIGEGLEKIVAQVRRAAQEISDGTDTI 408
                 6777899999***********99999998766655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.042
                 HHTTCHHHHHHHHHHHHHHHHHHCCEEE-HHHHHHHHHT-GGGGHHHHHHH CS
       ASL_C  12 vlRnlgvalahslialksllkglsklevneealaedLdenwevlaEaiqtv 62 
                    n++  ++  + +++++  ++++  +  e+ a+ L ++++++aEa  +v
  EHT99135.1 411 SSHNISEQIGRQASSVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIV 461
                 56799999**************************************97655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.03
                 CHHHHHHHHHHHHHHHHHHCCEEE-HHHHHHHHHT-GGGGHHHHHHH CS
       ASL_C  16 lgvalahslialksllkglsklevneealaedLdenwevlaEaiqtv 62 
                 + + ++ + +a ++ + g++ +++ ++++++  ++n e+++ a qt+
  EHT99135.1 576 VQALMGEINVAAQQQTAGIGLVNLAMNQISQATHQNSELVTQAEQTA 622
                 566789999*******************************9999985 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   0.00033      0.29      24     115 ..     406     496 ..     403     513 .. 0.87
   2 ?   -0.9   0.3         2   1.7e+03      71     106 ..     558     578 ..     525     607 .. 0.51
   3 ?   -1.1   0.3       2.3   1.9e+03      43      66 ..     600     623 ..     579     637 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesne 115
                 d++    +++++++ +  +++ee s s ++   +v+++ dslr++ +  ++ ++++ + ++++  + ++    i+   ++i  ++ v+es  
  EHT99135.1 406 DTIAASSHNISEQIGRQASSVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVDNGNQTVT-RSVNTMSAINVSSQSIADITHVIESIA 496
                 678888999*******************************************************.7777778999999*******9999864 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH CS
   Fib_alpha  71 skkdndnvikksskeleeeilrlketidaqesnirv 106
                  ++++  +++++ +++e               ++++
  EHT99135.1 558 LSEQTRDAMSEIVTHIE---------------QVQA 578
                 22222333333333333...............3322 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.3
                 CCCCCCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha  43 eleeisnstkeaeelvkeikdslr 66 
                  +++is+ t++ +elv++ +++ +
  EHT99135.1 600 AMNQISQATHQNSELVTQAEQTAQ 623
                 455666666666666665555443 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3      0.41   3.5e+02      10      48 ..      21      60 ..      19      76 .. 0.70
   2 ?   11.0   0.2   0.00047       0.4      29      86 ..     385     442 ..     373     445 .. 0.89
   3 ?    6.3   1.2     0.013        11      25      80 ..     441     495 ..     435     505 .. 0.64
   4 ?    0.5   5.7      0.85   7.3e+02      33      82 ..     560     609 ..     517     639 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
      DUF948 10 FvvLviflivvllklkktldeaaa.tieelekqvdpilke 48
                ++v v++l+ +l++ ++  +++++ +++++ +qv++i++ 
  EHT99135.1 21 VSVGVLLLVLTLIQSQNASRQLESlAMDDMVNQVQGITEM 60
                5688888888888887777777652467777777777653 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00047
      DUF948  29 deaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 + +++ ++++++ +++i++ ++++ a + ++ e++ ++  +v++  +++++ g++v++
  EHT99135.1 385 EGLEKIVAQVRRAAQEISDGTDTIAASSHNISEQIGRQASSVEETSASMEQFGATVEH 442
                 66889999**********************************************9986 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.013
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadl 80 
                 ++t+d++++++  l  ++ +i+++ +++++ + ++++ +n  ++++  +t+ ++ +
  EHT99135.1 441 EHTADSLRQAMS-LVAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIESI 495
                 334444443332.3367777888888877777777778887777777777766655 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.85
      DUF948  33 atieelekqvdpilkevedllakvnelledvneklekvdplteavadlge 82 
                 ++ ++ ++++   +++v++l+ ++n+ +++ +  +  v+  ++++ +++ 
  EHT99135.1 560 EQTRDAMSEIVTHIEQVQALMGEINVAAQQQTAGIGLVNLAMNQISQATH 609
                 44444555555555555555555555333333333333333333333333 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.18   1.6e+02     238     280 ..     392     434 ..     351     445 .. 0.46
   2 ?    8.8   0.7   0.00089      0.76       7      59 ..     444     496 ..     438     506 .. 0.91
   3 ?    1.9   3.5      0.12        99      12      82 ..     547     620 ..     534     640 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 238 aeledVvkelqerleemekakkllsekkeeiekllsalkkale 280
                 a++    +e+ +  + + +++  +se+  +  ++++++++ +e
  EHT99135.1 392 AQVRRAAQEISDGTDTIAASSHNISEQIGRQASSVEETSASME 434
                 1222222222222222233333333333333333333333333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00089
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHII CS
       APG17   7 kksLseaqtlcqrAnelltsarqeleeavkllakteflrdglkqQlkllekir 59 
                  +sL +a++l+ +A++++ + +q ++++v+ ++ ++   +++++  +++e+i+
  EHT99135.1 444 ADSLRQAMSLVAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIESIA 496
                 679****************************************9999999876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....IIIIIIIIIIIIIIIIIHHHHHHHH CS
       APG17  12 eaqtlcqrAnelltsarqeleeavkllakteflrdglkqQlkllek....irkslerklekgkeefkdlikelda 82 
                 +++ ++ + + l++++r++++e+v+++++++ l   ++   +  ++    ++  +++   ++  +  +l+++ ++
  EHT99135.1 547 TSIRHVAEGHALSEQTRDAMSEIVTHIEQVQALMGEINVAAQQQTAgiglVNLAMNQI-SQATHQNSELVTQAEQ 620
                 5788888888889999999999888888888887766432222222112122222222.2222222333333333 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.012       9.9       5     110 ..     400     508 ..     376     513 .. 0.79
   2 ?    1.6   1.6      0.22   1.9e+02      67     101 ..     556     590 ..     528     639 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
        YkyA   5 kiyealeeavelEkefeeq...qekLtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeieeiedeelk 100
                 +i++  ++++++  ++ eq   q + +e  +  +e +  ++e + d + +  +l++ea ++v++ ++ +    + +++ +   ++i +++  ie  + +
  EHT99135.1 400 EISDGTDTIAASSHNISEQigrQASSVEETSASMEQFGATVEHTADSLRQAMSLVAEASSIVDNGNQTVTRSVNTMSAINVSSQSIADITHVIESIAFQ 498
                 555666666666555555533345555666678899999999999999999999999999999999999999999999999999999998888877777 PP

        YkyA 101 keaeelieam 110
                 +++ +l+ a+
  EHT99135.1 499 TNILALNAAV 508
                 7777776665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.22
        YkyA  67 eellekekesieeakeefekikeeieeiedeelkk 101
                   l e+ +++++e    +e++++ + ei+  ++++
  EHT99135.1 556 HALSEQTRDAMSEIVTHIEQVQALMGEINVAAQQQ 590
                 44444444444444444444444444443222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 4228.21
//
Query:       EHT99136.1  [L=108]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-17   61.0   0.1    1.2e-16   60.4   0.1    1.3  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   6.6e-21   1.2e-16       3      55 ..      46      98 ..      44      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 6.6e-21
                EEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEE CS
     DUF1471  3 pigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelY 55
                ++gtis+s v+gsp+d+e+a++++A+++GA yY+I +++e   +g ++ tA+lY
  EHT99136.1 46 KLGTISAS-VRGSPDDAERAIAARANQAGAVYYQILMVDEtITPGIWYTTAILY 98
                89******.********************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 824.04
//
Query:       EHT99137.1  [L=543]
Description: isovaleryl CoA dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-55  186.8   0.5    8.4e-55  185.0   0.0    2.2  3  AidB_N         Adaptive response protein AidB N-terminal doma
    7.9e-29  100.8   1.0    1.3e-28  100.1   1.0    1.4  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    6.1e-13   48.8   0.0      1e-12   48.0   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.7e-08   34.2   1.7    3.3e-08   33.9   0.1    1.9  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> AidB_N  Adaptive response protein AidB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   0.0   1.9e-58   8.4e-55       1     156 []      10     168 ..      10     168 .. 0.99
   2 ?   -3.0   0.1       1.4   6.1e+03      31      54 ..     357     380 ..     335     387 .. 0.49
   3 ?   -2.0   0.0      0.68   3.1e+03     131     150 ..     500     520 ..     497     526 .. 0.79

  Alignments for each domain:
  == domain 1  score: 185.0 bits;  conditional E-value: 1.9e-58
      AidB_N   1 NqpppledvnlfasdpaLqeavaregaaeaaeelaalGellgsaevlelarlanrnpPrlrthDrfGrRiDevefhpayhalmaaaveaglhasawe.. 97 
                 Nqp pl++ nlf sd++L +a+ reg   +++ la++G+ lgsae lel+rlan+ pP+l+++D++G R+D v+fhpa+h lm+  ++ +lh+++w+  
  EHT99137.1  10 NQPFPLSNSNLFLSDVPLCDALLREGGGGDSDWLASVGSQLGSAESLELGRLANTCPPELHRYDARGVRVDDVRFHPAWHLLMQGVCSSRLHNLSWQpd 108
                 9*************************************************************************************************9 PP

      AidB_N  98 earegahvaraallyllaqveaGhlCPltmThAavpaL.kaepalaeewlpkllsrdYdp 156
                 + +++a varaa+++l+aqveaG+lCP+tmThAa+p+L +  p +++ wl+ lls +Yd+
  EHT99137.1 109 DVQPNASVARAARFILHAQVEAGTLCPVTMTHAAIPLLqRYLPTAFRGWLEPLLSDRYDT 168
                 99************************************6689****************95 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
      AidB_N  31 aeelaalGellgsaevlelarlan 54 
                 ++ l +l++++ +a+ +++a  a+
  EHT99137.1 357 TALLMRLARAWSQADDANQAAFAR 380
                 444455555555554444444444 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.68
      AidB_N 131 avpaL.kaepalaeewlpkll 150
                 av +L +aep+la+ w+ + l
  EHT99137.1 500 AVQLLrHAEPRLADAWCGQWL 520
                 899997799999999987765 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   1.0   2.9e-32   1.3e-28       1     149 [.     290     444 ..     290     445 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 2.9e-32
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------......HHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd......raeasm 90 
                    g+G+r++++   ++R+ +a+++ g +rra+  al +a++r+  gk l+d++l+r+ la+ a +le+  +l++r+a+a ++++++      r  +  
     EHT99137.1 290 GEGVRLILKMAGMTRFDCALGSHGQMRRAFSVALYHAHQRQVMGKNLVDQPLMRQVLARQALQLEGQTALLMRLARAWSQADDAnqaafaRLLTPE 385
                    68***********************************************************************99976666666667999999999 PP

                    HHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH CS
  Acyl-CoA_dh_1  91 aKlfaselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrl 149
                    aK++ +++ + ++++ m++lGg+Gy ee ++ rlyrd+ v++i+eG+ +++++++ r++
     EHT99137.1 386 AKFVICKAGMPFVAESMEMLGGNGYCEESELPRLYRDMPVNSIWEGSGNVMCLDVLRVI 444
                    ******************************************************99976 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.3e-16     1e-12       1      96 [.     182     280 ..     182     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 2.3e-16
                    EEE---SS-SS-GGG---EEEEETT.E....EEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GG.....GEEE-----BSS-TTS CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdgge....yvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdap.....gvsvrrieeklGlrgl 87 
                    ++++TE+q+Gsdv +++t+a + +g +    y+l G+K++ + +++++ +++la+     +++gls+f++pr  p      + ++r+++klG r  
     EHT99137.1 182 GMGMTEKQGGSDVLTNTTRAEPLQGRGsgkaYRLIGHKWFFS-VPQSDAHVILAQ-----TQQGLSCFFLPRLLPdgshnAIFIERLKDKLGNRAN 271
                    699*****************77777556899*******8886.78**********.....489*****9997777666768888************ PP

                    -EEEEEEE. CS
  Acyl-CoA_dh_M  88 ptgelvfed 96 
                    +++e++f+d
     EHT99137.1 272 ASSEVEFKD 280
                    *******98 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   7.4e-12   3.3e-08       9     126 ..     313     426 ..     308     432 .. 0.91
   2 ?   -2.1   0.1      0.98   4.4e+03      34      34 ..     485     485 ..     464     536 .. 0.52

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 7.4e-12
                    HHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   9 GaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavdalfea 104
                    G  r+a+  ++ +a++r+    g++l d+p + + la+ a +l+   all r a++ +  a+++++  +  r+    a+ +  +     v + +e+
     EHT99137.1 313 GQMRRAFSVALYHAHQRQV--MGKNLVDQPLMRQVLARQALQLEGQTALLMRLARA-WSQADDANQA-AFARLLTPEAKFVICKAGMPFVAESMEM 404
                    6779999999999999999..9****************************999988.8888888885.66788888999999************** PP

                    CGGGGGBTT-HHHHHHHHHHHH CS
  Acyl-CoA_dh_2 105 aGgsalrkesplqRlwRDahaa 126
                     Gg+++ +es+l Rl+RD+ + 
     EHT99137.1 405 LGGNGYCEESELPRLYRDMPVN 426
                    ******************8765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.98
                    - CS
  Acyl-CoA_dh_2  34 l 34 
                    +
     EHT99137.1 485 A 485
                    2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4306.54
//
Query:       EHT99138.1  [L=244]
Description: 23S rRNA (Gm2251)-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-40  138.6   0.0    2.1e-40  138.2   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family
    2.3e-21   75.9   0.0    1.4e-20   73.3   0.0    2.0  2  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   2.3e-44   2.1e-40       2     142 .]      96     236 ..      95     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 2.3e-44
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCSHHHT CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslseidlke 95 
                     + +vl++++dp+NlGa++R+a+a+g++++++ k+rsa +ln +ak++a+ga+e ++l +v++l+++l+ l+e  +++v+t +  ++++++ ++++
      EHT99138.1  96 FLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSA-PLNATAKKVASGAAENIPLIRVTNLARTLRLLQEYHIWVVGTAGeADHTVYQSKMTG 189
                     679******************************9998.********************************************8888999****** PP

                     TEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  96 kvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     ++alv+G E++G+++ ++e++d+l++Ipm+g+v+SLNv+vA++++l+
      EHT99138.1 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236
                     ********************************************985 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   1.5e-24   1.4e-20       1      73 [.       4      77 ..       4      80 .. 0.96
   2 ?    0.0   0.0      0.12   1.1e+03      11      31 ..     112     134 ..      98     156 .. 0.57

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 1.5e-24
  SpoU_sub_bind  1 liyGlhaVleaLksgrr.iekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkpl 73
                   +i+G+haV+++L+ +++ ++++++ +gr d+rl++l+++++++gi ++l+d+ +Ld  +++++HQG+va+vkp 
     EHT99138.1  4 IIFGIHAVQALLERDPQrFQEVFILKGRDDRRLQPLVTALEAQGIVIQLADRTWLDSQAEGGVHQGIVARVKPG 77
                   69*************888******************************************************96 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.12
  SpoU_sub_bind  11 aLksgrr..iekllvtegradkr 31 
                    +L+s     +++++v ++r+++ 
     EHT99138.1 112 CLRSADAagVHAVIVPKDRSAPL 134
                    55554333566777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1854.22
//
Query:       EHT99139.1  [L=811]
Description: exoribonuclease R, RNase R [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.8e-109  364.1   0.0   1.1e-108  363.4   0.0    1.3  1  RNB            RNB domain
    3.4e-26   90.7   9.8    1.3e-21   76.0   0.2    4.1  4  OB_RNB         Ribonuclease B OB domain
    2.9e-22   78.6   0.0    4.9e-21   74.7   0.0    2.5  2  CSD2           Cold shock domain
    2.2e-16   59.9   0.2      5e-16   58.8   0.2    1.7  1  S1             S1 RNA binding domain
    4.9e-16   58.4   2.4    1.1e-15   57.3   2.4    1.7  1  HTH_12         Ribonuclease R winged-helix domain
     0.0031   17.4   0.4      0.037   14.0   0.1    2.9  3  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
  ------ inclusion threshold ------
      0.026   14.3   0.2      0.085   12.6   0.2    1.9  1  LexA_DNA_bind  LexA DNA binding domain
      0.046   13.6   0.0       0.17   11.8   0.0    1.9  1  Rho_RNA_bind   Rho termination factor, RNA-binding domain
       0.23   11.8   0.5        1.3    9.4   0.2    2.4  2  TFIIE_beta     TFIIE beta subunit core domain
       0.24   11.6   0.0       0.24   11.6   0.0    2.5  2  YqfQ           YqfQ-like protein


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.4   0.0  6.3e-112  1.1e-108       1     325 [.     260     587 ..     260     588 .. 0.96

  Alignments for each domain:
  == domain 1  score: 363.4 bits;  conditional E-value: 6.3e-112
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlid 99 
                 R+dlr+l+ +tId+eda+d+DdA+++ek   g+++l+V+IADvs+yv++g+pld+ea++r+tsvy+p +vvpMLP+ ls++lcSLnp+ drl+++++++
  EHT99139.1 260 RVDLRQLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPGTPLDNEAQQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358
                 89*************************99999******************************************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 100 vdekgevlsveiylsvIkskarltydevqdlleqkdekeekk...taedLellyelakalrkkRlkkgalefdspeikllldedkgnrielkveeetka 195
                 v++kg+++ ++ y++v++s+arlty +v ++l++++e  e +    ++dL++l+++ ++l++ R+++g ++f+++e+k+++++ +++  +++ + +++a
  EHT99139.1 359 VSAKGKLTGFKHYEAVMNSHARLTYTKVWNILQGNPELCE-QyapLVKDLQELHNMYQVLETAREERGGISFETEEAKFIFNA-ERRIERVERTSRNDA 455
                 ********************************99887652.1357**************************************.777888********* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 196 hslveelmllANelvArflseleipailriheepsnekledliklakklglk..lednsskknlqeslekleeeeaeqllselllrllkeakyssepvg 292
                 h+l+ee+m+lAN + Arf++++++pa++r h+ ps ++++++++++++lgl+    +++++ ++  +le++++++  ++l+ +llr++k+a+y +e+ g
  EHT99139.1 456 HKLIEECMILANIASARFVEKNQEPALFRDHDRPSDDSIKSFRTVLNELGLSlpGGNKPQPVDYAALLEQVADRPDAEMLQTMLLRSMKQAVYDPENRG 554
                 ****************************************************76566777889************************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 293 HfgLaleeYthfTSPirRYpDlvvhrllkalla 325
                 HfgLal  Y+hfTSPirRYpDl+ hr +k lla
  EHT99139.1 555 HFGLALASYAHFTSPIRRYPDLLLHRAIKYLLA 587
                 *****************************9997 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.2   7.2e-25   1.3e-21       1      58 []      87     144 ..      87     144 .. 0.99
   2 !   17.8   0.0   1.1e-06     0.002       6      58 .]     158     213 ..     156     213 .. 0.94
   3 ?    0.2   0.4      0.34   6.1e+02       4      24 ..     652     669 ..     650     671 .. 0.76
   4 ?   -1.0   0.1      0.82   1.5e+03      35      45 ..     704     715 ..     703     722 .. 0.75

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 7.2e-25
                 EEEEE-SSS-EEEEECT.TEEEEE-HHHHTTS-TT-EEEEEEEESSSEEEEEEEEEE- CS
      OB_RNB   1 GtvrahkkGFGFlipdegkeDifippeqmkkamhGDrVlvritkgdrrgrregrvvri 58 
                 G+v++h++G+GFl+++++k+D+++++eqmk +mhGD +l+++ + dr+grre+rvvr+
  EHT99139.1  87 GKVIGHRDGYGFLRVEGQKDDLYLSAEQMKFCMHGDVILAQPLGADRKGRREARVVRV 144
                 99******************************************************97 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.1e-06
                 -SSS-EEEEECT...TEEEEE-HHHHTTS-TT-EEEEEEEE.SSSEEEEEEEEEE- CS
      OB_RNB   6 hkkGFGFlipde..gkeDifippeqmkkamhGDrVlvritk.gdrrgrregrvvri 58 
                 +++G GF++pd+   + Di i pe++ +a  G  V+v++ +  +rr++  g++++i
  EHT99139.1 158 TDAGVGFVVPDDsrLSFDILIGPEETMNARMGSVVVVELLQrPTRRSKAIGKIAEI 213
                 67899********999*************************9******99999886 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.34
                 EE-SSS-EEEEECT.TEEEEE CS
      OB_RNB   4 rahkkGFGFlipdegkeDifi 24 
                 + +  GFGF++  +   D+fi
  EHT99139.1 652 ISSVTGFGFFVRLS---DLFI 669
                 66778****99874...7777 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.82
                 T-EEEEEEEE.S CS
      OB_RNB  35 GDrVlvritk.g 45 
                 GD V+vr++  +
  EHT99139.1 704 GDAVEVRVEAvH 715
                 9*******9843 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.29   5.3e+02      11      49 ..     106     144 ..     103     150 .. 0.82
   2 !   74.7   0.0   2.7e-24   4.9e-21       1      74 []     164     238 ..     164     238 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.29
        CSD2  11 qdifipkeklkgakdGdkVvveiteypdkknpeGeviev 49 
                 +d ++++e+ k + +Gd+++++ +  + k + e++v++v
  EHT99139.1 106 DDLYLSAEQMKFCMHGDVILAQPLGADRKGRREARVVRV 144
                 689999999999**********99876432378888876 PP

  == domain 2  score: 74.7 bits;  conditional E-value: 2.7e-24
        CSD2   1 FVvpddkrlkqdifipkeklkgakdGdkVvveiteypdkkn.peGevievLGkkgdpgveilsilakhglpeeFP 74 
                 FVvpdd+rl++di+i +e++++a++G +Vvve++++p++++ ++G+++e+LG+ +  +  ++++l++h++p+++P
  EHT99139.1 164 FVVPDDSRLSFDILIGPEETMNARMGSVVVVELLQRPTRRSkAIGKIAEILGDDMGTSLAVDMALRTHEIPHSWP 238
                 9************************************98766********************************9 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.2   2.8e-19     5e-16       2      73 ..     642     724 ..     641     726 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 2.8e-19
                 STTTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS..........CEESCHHHCEETTEEEEEEEEEEETTTTEEEEE CS
          S1   2 pekgevveGeVtsvtkgGafVelg.ngvegfvpaselsrd..........arvedpdevlkvGdevkvkvlkvdkdrrriils 73 
                 +++g+v+ G+++svt +G+fV+l    ++g+v++s+l++d            +e+++++++ Gd v+v+v+ v +d+r+i+++
  EHT99139.1 642 DQVGNVFNGVISSVTGFGFFVRLSdLFIDGLVHVSTLDNDyyrfdpvgqrLIGESGGRTYRLGDAVEVRVEAVHMDERKIDFA 724
                 689***********************************************99****************************997 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   2.4   6.3e-19   1.1e-15       2      66 .]      23      85 ..      22      85 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 6.3e-19
      HTH_12  2 eILkilaesdkpigakeiaeeLkkr.gydigeravRyrLrkleerg...ltrrvgyagreltEkGleeL 66
                 IL++l++++kp +++e+a+e++++ ++ +  +a+R+rLr++e++g   +trr++ya   l+E+ l++L
  EHT99139.1 23 FILALLEKREKPASREELAQEMNLQeEEHL--EALRRRLRAMERDGqlvFTRRQCYA---LPER-LDLL 85
                69***********************77888..*************************...***9.8876 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.9   3.3e+03      34      54 ..     611     631 ..     608     632 .. 0.86
   2 ?   -1.0   0.0         1   1.8e+03       2      28 ..     647     673 ..     646     678 .. 0.87
   3 !   14.0   0.1   2.1e-05     0.037      30      58 ..     697     725 ..     687     726 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.9
  RNase_II_C_S1  34 lplGervrVrLveADvatrrv 54 
                    l lG+++  +  +AD atr v
     EHT99139.1 611 LQLGQHCSMTERRADEATRDV 631
                    7899999999999*****998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
  RNase_II_C_S1   2 tFdAvVvdvddrggtVqladPaVeArv 28 
                    +F +v+ +v + g  V+l+d+ +++ v
     EHT99139.1 647 VFNGVISSVTGFGFFVRLSDLFIDGLV 673
                    799*****************9998866 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 2.1e-05
  RNase_II_C_S1  30 ggaglplGervrVrLveADvatrrvrFep 58 
                    gg++ +lG++v+Vr++++  ++r+++F++
     EHT99139.1 697 GGRTYRLGDAVEVRVEAVHMDERKIDFAL 725
                    667889*********************86 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   4.8e-05     0.085      13      53 ..      22      58 ..      21      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
                   HHHHHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHT CS
  LexA_DNA_bind 13 dlikasieetgypPsireiaralglkSpsaveehLkaLerK 53
                   ++i a +e++  p s+ e+a++++l+     eehL+aL+r+
     EHT99139.1 22 EFILALLEKREKPASREELAQEMNLQ----EEEHLEALRRR 58
                   689999*******************9....68888888874 PP

>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.4e-05      0.17       9      64 ..      93     144 ..      87     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.4e-05
                   TTS-EEEE-GTT---TT-EEE-CCCCCCTT--TT-EEEEEEE--.-SSS-SEEECEE CS
  Rho_RNA_bind   9 pdgygFlRtsnylpgpedvYVsasqirkfgLrtGDaveGkvrpp.kerekynaLlrv 64 
                   +dgygFlR +    +++d Y+sa+q++ +   +GD++ ++   + +++++ + ++rv
    EHT99139.1  93 RDGYGFLRVE---GQKDDLYLSAEQMKFC--MHGDVILAQPLGAdRKGRREARVVRV 144
                   69******98...589**********966..37998876643322445555555555 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00073       1.3       8      50 ..      24      64 ..      23      65 .. 0.84
   2 ?   -1.9   0.0       2.3   4.2e+03      18      57 ..     516     552 ..     512     555 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
  TFIIE_beta  8 iveylKkkdgplsleeIlsylslqldlsdknwllleaLknnpk 50
                i   l k+++p s ee++++++l  + +++ ++l++ L+ +++
  EHT99139.1 24 ILALLEKREKPASREELAQEMNL--QEEEHLEALRRRLRAMER 64
                56679999**************9..666778888888888776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
  TFIIE_beta  18 plsleeIlsylslqldlsdknwllleaLknnpkieyDpkk 57 
                 p+ +  +l+++    d +d + l + +L+++++  yDp++
  EHT99139.1 516 PVDYAALLEQVA---DRPDAEMLQTMLLRSMKQAVYDPEN 552
                 566666666666...4556678899999999999999964 PP

>> YqfQ  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.24      71     121 ..     385     435 ..     361     471 .. 0.84
   2 ?   -7.7  13.7        10   1.8e+04     123     168 ..     750     807 ..     723     811 .] 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
        YqfQ  71 kvlkvaqqvgPlvqQYGPlvrnlPaivkilrslkssedeeteevteseeve 121
                 kv ++ q    l +QY Plv++l  +  +++ l+ + +e      e+ee +
  EHT99139.1 385 KVWNILQGNPELCEQYAPLVKDLQELHNMYQVLETAREERGGISFETEEAK 435
                 888888988899*************************99988888888765 PP

  == domain 2  score: -7.7 bits;  conditional E-value: 10
        YqfQ 123 s.............eteeseknkkkkpkakkkkkkkkkkdvkeeeiekeapkekkvqsk 168
                 +             e +    +  +kp a k++kk+kk   k  +i+ +++ + ++++k
  EHT99139.1 750 PtkrrrqasrktnfEPDSAFRKSGSKPAAAKTEKKSKKVSEKTRKIAAATKAK-RAAKK 807
                 44444444553333333344445567778888888888888888887665555.45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1210  (0.0674884); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5363.93
//
Query:       EHT99140.1  [L=147]
Description: DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-24   83.6   0.0    1.6e-23   82.8   0.0    1.4  1  Rrf2      Transcriptional regulator
     0.0016   18.3   0.0     0.0057   16.5   0.0    1.9  2  TrmB      Sugar-specific transcriptional regulator TrmB
     0.0054   17.2   0.0      0.013   16.0   0.0    1.7  2  HTH_27    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.068   13.1   0.0    1.6  1  MarR_2    MarR family
      0.046   13.4   0.0      0.082   12.6   0.0    1.4  1  GntR      Bacterial regulatory proteins, gntR family


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   4.5e-27   1.6e-23       1      82 [.       1      82 [.       1      83 [. 0.99

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 4.5e-27
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvra 82
                M+l+s t+y+l+al+y+a+ +e++  s++e+ + +++s++++ ki+++L++ag+v ++rGk+GG+rL  pp +I ++dvvr 
  EHT99140.1  1 MQLTSFTDYGLRALIYMATLPEGRLTSITEVTDTYGVSRNHMVKIINQLSRAGFVAAIRGKNGGIRLGMPPGNIIIGDVVRK 82
                9*******************************************************************************95 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06    0.0057      13      58 ..      15      61 ..       4      89 .. 0.82
   2 ?   -0.9   0.0      0.43   1.5e+03      39      65 ..     110     136 ..     108     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
                HCHHHHHHCCCH.HCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 13 vYlaLlklgpat.adeiaeelgvprskvYevLrsLedkGlVerekgr 58
                +Y a l +g++t ++e+    gv+r+   +++++L+++G+V  ++g+
  EHT99140.1 15 IYMATLPEGRLTsITEVTDTYGVSRNHMVKIINQLSRAGFVAAIRGK 61
                456666666655379999************************99987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.43
                 HHHHHHHHHHCTSEEEESSTTTEEEE- CS
        TrmB  39 vYevLrsLedkGlVerekgrpklYrav 65 
                 v+  L++L    l + ++g++ lY+ v
  EHT99140.1 110 VQLFLKELDGYTLADLVEGNTPLYEIV 136
                 667788888888888888888888876 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.6e-06     0.013      17      49 ..      24      56 ..      12      67 .. 0.81
   2 ?   -3.4   0.0       4.1   1.5e+04      37      48 ..      78      89 ..      75      97 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
      HTH_27 17 rrkkladlcgrlnvedshisyslkkLtekGLve 49
                r  +++++ +++ v+  h+++++++L ++G+v 
  EHT99140.1 24 RLTSITEVTDTYGVSRNHMVKIINQLSRAGFVA 56
                44567**************************94 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.1
      HTH_27 37 yslkkLtekGLv 48
                 +++k++   Lv
  EHT99140.1 78 DVVRKMEPLQLV 89
                678888766666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.068       9      56 ..      12      60 ..      11      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
                HHHHHHHCTTTSEE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  9 rvLaaLgrrpgrdl.tvgelarrlglsksavsrilkrLvaaGLverrpg 56
                r+L + +  p+++l +++e++++ g+s+  + +i++ L++aG+v   +g
  EHT99140.1 12 RALIYMATLPEGRLtSITEVTDTYGVSRNHMVKIINQLSRAGFVAAIRG 60
                789999999999999*****************************76655 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.082      13      60 ..      15      61 ..      10      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                HHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR 13 IlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgr 60
                I   +l p+ +L s  e+ + +gVsr+   + +++L+++g v + +g+
  EHT99140.1 15 IYMATL-PEGRLTSITEVTDTYGVSRNHMVKIINQLSRAGFVAAIRGK 61
                444444.55556699***************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1104.23
//
Query:       EHT99141.1  [L=432]
Description: adenylosuccinate synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-177  590.8   0.1   1.7e-177  590.6   0.1    1.0  1  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.6   0.1  9.4e-182  1.7e-177       1     418 [.       5     423 ..       5     424 .. 0.99

  Alignments for each domain:
  == domain 1  score: 590.6 bits;  conditional E-value: 9.4e-182
                      .EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEEETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT......T CS
  Adenylsucc_synt   1 vvvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvvvdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelsker 94 
                      vvv+G+qwGDEGKGkivDll+e+a++vvR+qGG+nAGHt+v++g+k++lhl+pSGil+++v+++iGngvv++peal++E++ le++g+ + +er
       EHT99141.1   5 VVVLGTQWGDEGKGKIVDLLTERANYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRDNVTSIIGNGVVLSPEALMKEMKGLEERGIPV-RER 97 
                      69**************************************************************************************77.8** PP

                      EEEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT---BGGGGGSHHHHHHHHHHHHHHTHHHHHHT....T-----HHHHH CS
  Adenylsucc_synt  95 llisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrgirvgdlldeeeleeklekllelknkllekldk.eeleveelleel 187
                      llis+ + l+l+yh+a+D ++e+a+g+k+iGtT++GiGpay+dkvarr++rv dl+++e++++kl+++++l+n  l +++k e+++++++l+++
       EHT99141.1  98 LLISEACPLILQYHVAMDMAREKARGAKAIGTTGRGIGPAYEDKVARRALRVSDLFNKETFAAKLKEVMDLYNFQLVNYYKeEAVDYDKVLNDV 191
                      ************************************************************************99999998889*********** PP

                      HHHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT--GGGEEEEEEEEESSEEESSSS--TTB--S CS
  Adenylsucc_synt 188 lkyaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglglapkkidevlgvvKAyttrvGeGpfptelkd 281
                      +++a+ l  +vvd+++ll++a k+g+ ++fEGaqgtllDidhGtYP+vTsSnttagg++tg+g++p+ +d+vlg+vKAy+trvG+Gpfptel+d
       EHT99141.1 192 MAVADILTGMVVDVSELLDTARKRGDLIMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGIGPRFVDYVLGIVKAYSTRVGAGPFPTELFD 285
                      ********************************************************************************************** PP

                      HHHHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-SEEEEEEEEE.ETTEEESS--S.....-GEEEEEEEEE-- CS
  Adenylsucc_synt 282 evgeklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgldeikvcvaYk.ldgkeldefpasleelekvepvyeelpgW 374
                      e+ge l ++G+Efg+ttgr+Rr+GwlD+v++r+av++n+++++++tklDvldgl+e+k+cvaY+  dg+e++++p ++e++e +ep+ye+ pgW
       EHT99141.1 286 ETGEFLCKQGNEFGATTGRRRRTGWLDAVAVRRAVQINSLSGFCMTKLDVLDGLKEVKICVAYRmPDGSEVTTTPLAAENWEGIEPIYETQPGW 379
                      ***************************************************************978999************************* PP

                      .S--TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-E CS
  Adenylsucc_synt 375 kedisgvrsfedlpenakkyvefieellgvpvkiisvGpereqt 418
                      +e++ gv+++e lp++a++y++++ee++gvp++iis+Gp+r++t
       EHT99141.1 380 SETTFGVKTLEGLPQAARNYIKRVEEVTGVPIDIISTGPDRSET 423
                      *****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3271.46
//
Query:       EHT99142.1  [L=66]
Description: hypothetical protein CKS_0753 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-18   65.7   8.7    3.2e-18   65.5   8.7    1.0  1  DUF2065   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2065  Uncharacterized protein conserved in bacteria (DUF2065)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   8.7   1.8e-22   3.2e-18       1      55 [.       5      59 ..       5      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.8e-22
     DUF2065  1 lllAlGLvlviEGllpflaPerwrralrqlaelpdrqlRliGlvlmllGlvllwl 55
                +++Al+Lvlv+EGl+p+ +P+ wrr+++++++lpdr l ++G++l+++G+v++++
  EHT99142.1  5 IWMALALVLVLEGLGPMFMPRLWRRVVLSMTQLPDRLLHRFGGGLVVAGVVIYCM 59
                69**************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 551.56
//
Query:       EHT99143.1  [L=334]
Description: modulator for HflB protease specific for phage lambda cII repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-33  113.6   0.8    1.3e-32  113.3   0.5    1.3  1  Band_7         SPFH domain / Band 7 family
     0.0092   16.6   2.2      0.033   14.8   2.5    1.8  2  CCP_MauG       Di-haem cytochrome c peroxidase
  ------ inclusion threshold ------
        0.1   11.6   0.0       0.14   11.2   0.0    1.2  1  Calsequestrin  Calsequestrin


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.5   2.2e-36   1.3e-32       2     177 ..      22     243 ..      21     253 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 2.2e-36
      Band_7   2 iieegevgvvvrfGklsr.......vlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaav.eresanldnl 92 
                 +++ege+g+v rfGk+ r       v  pGlhf++Pf+++v+  ++r+qt+d++    ++tk++  + +d+++ +r+ +d +++++a    +  + + l
  EHT99143.1  22 VVQEGERGIVLRFGKVLRdsenkpqVFAPGLHFKIPFIETVKMLDARIQTMDNQA-DRFVTKEKKDLIVDSYIKWRI-SDFSRYYLATgGGDVSQAEVL 118
                 89*****************************************************.*********************.**********87888889*** PP

      Band_7  93 irrvlesalrevisemtleellsn.reelaeelkneln.......................................eqlrkyGvevldvritdidppp 151
                 ++r++++ lr+  +++++++++ + r+ l+ +++++ln                                       + ++ +G++v+dvri++i++p 
  EHT99143.1 119 LKRKFSDRLRSEMGRLDVKDIVTDsRGRLTTDVRDALNtgtaggdddvstpaaddaiasaaarveretnssepapnpNSMAALGIQVVDVRIKQINLPT 217
                 **********************9989*******************************9999999999999998888888******************** PP

      Band_7 152 evaqalaakqaaeaeaqaeiaraeae 177
                 ev +a+  +++ae+ea+a+ +r++++
  EHT99143.1 218 EVSDAIFNRMRAEREAVARSQRSQGQ 243
                 ****************8888888876 PP

>> CCP_MauG  Di-haem cytochrome c peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.63   3.8e+03      52      80 ..      43      78 ..      24     107 .. 0.74
   2 !   14.8   2.5   5.5e-06     0.033      68     146 ..     243     327 ..     159     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.63
                ----STTGGGSS.......SBSTTEEBSSHHHHHHH CS
    CCP_MauG 52 naptllnaafnk.......glfwdgraesleeqalg 80
                n p+++ +++++         + d r++++ +qa +
  EHT99143.1 43 NKPQVFAPGLHFkipfietVKMLDARIQTMDNQADR 78
                666666666644556666677788888888888754 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.5e-06
                 TEEBSSHHHHHHHHHHHTTTTH.SSHHHHHHHHHTSHHHHHHHHHHCTSCCSHHHHHHHHHHHHTT--STT........SHHHHHHT CS
    CCP_MauG  68 dgraesleeqalgPllnpvemgnaskeevverlaaspeYaelfeaafgekitfaniakAiaayertlvsae........skfDrylk 146
                 +++ae+l +qa   ++ +   +  ++e++++r   ++e a+lf++af+++  f ++++++ aye+++ +++        s f ry+k
  EHT99143.1 243 QEEAEKLRAQADYQVTRTLAEA--QREALITRGDGDAEAAKLFANAFSQDPDFYAFIRSLRAYENSFNENQdvmvlspdSDFFRYMK 327
                 3445588888887777766664..8899999999**************8899*************9999889999999999999987 PP

>> Calsequestrin  Calsequestrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.3e-05      0.14     251     318 ..     258     325 ..     224     333 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.3e-05
                    S-SEEE--CCCHHHHHHS-STSEEEEEE--TTSHHHHHHHHHHHHHHHHCCC-TT--EEEE-GGG-HH CS
  Calsequestrin 251 rstlrklkpedmyetweddldgihivafaeeadpdgyefleilkavardntenpdlsivwidpddfpl 318
                      tl + + e +    + d +  ++ a a   dpd y f+  l+a  +   en d+ ++  d d f  
     EHT99143.1 258 TRTLAEAQREALITRGDGDAEAAKLFANAFSQDPDFYAFIRSLRAYENSFNENQDVMVLSPDSDFFRY 325
                    467888889999999999**************************************999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      813  (0.0453455); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.35
# Mc/sec: 2863.48
//
Query:       EHT99144.1  [L=410]
Description: modulator for HflB protease specific for phage lambda cII repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-30  106.3   2.3    2.9e-30  105.6   2.3    1.3  1  Band_7    SPFH domain / Band 7 family
    1.2e-14   54.0  13.2    3.3e-14   52.6  13.2    1.8  1  HflK_N    Bacterial membrane protein N terminal
  ------ inclusion threshold ------
       0.15   12.2   2.1       0.27   11.3   2.1    1.4  1  DivIVA    DivIVA protein
       0.18   12.1   2.7       0.23   11.7   0.7    2.0  2  CD99L2    CD99 antigen like protein 2


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   2.3   6.5e-34   2.9e-30       2     176 ..      92     263 ..      91     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 6.5e-34
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvtvvsvr.vqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvles 99 
                 +i+e e+gvv+rfGk s+++epGl ++  f+++v  v+v  v++l  s    ++t+D  +v++++ v+yrv +d+ ++ ++v     ++d+ +r++++s
  EHT99144.1  92 TIKEAERGVVTRFGKFSHIVEPGLNWKPTFIDQVRAVNVEaVRELAASG--VMLTSDENVVRVEMNVQYRV-TDPERYLFSV----TSPDDSLRQATDS 183
                 799**********************************************..999*****************.**********....************* PP

      Band_7 100 alrevisemtleellsn.reelaeelknelneqlrkyG..vevldvritdidpppevaqalaakqaaeaeaqaeiaraea 176
                 alr vi++ t++ +l + r  +++e ++e+ e  r y   ++vldv+ ++ +pp+ev++a+ +++aa++ +++ +++aea
  EHT99144.1 184 ALRGVIGRSTMDRILTEgRTVVRSETQREIDETIRPYHmgITVLDVNFQAARPPEEVKSAFDDAIAARENREQYVREAEA 263
                 ***************88789999999999999999886669999*******************************99998 PP

>> HflK_N  Bacterial membrane protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6  13.2   7.3e-18   3.3e-14       1      46 []       1      57 [.       1      58 [. 0.86

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 7.3e-18
      HflK_N  1 MawNdpggn....dPWG....qg...rn.kggggqgPPDLDEllrdlqdkLgglfggg 46
                MawN+pg+n    dPWG    qg   ++ kgg++ gPPDLD+++r+l++kLgg fggg
  EHT99144.1  1 MAWNQPGNNgqdrDPWGssnnQGgnsGGnKGGKESGPPDLDDIFRKLSKKLGG-FGGG 57
                9****************99983333322599**********************.6665 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.1   6.1e-05      0.27      69     125 ..     258     314 ..     237     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  69 lvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqarl 125
                 +  a+  a+ev+  a+  a+ +++eA++ +e+ v ea+ e+++ a+ + e k   ++
  EHT99144.1 258 VREAEAYANEVQPRANGRAQRVLEEARAYKERTVLEAQGEVARFAKLLPEYKAAPEI 314
                 445889999999999999999999999999999999999999998877777766555 PP

>> CD99L2  CD99 antigen like protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   5.2e-05      0.23      62     135 ..      22      91 ..       8      95 .. 0.77
   2 ?   -0.8   0.0      0.36   1.6e+03      69     101 ..     368     399 ..     342     409 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
      CD99L2  62 kgkkkggseggt.fsdddledvaegggykPDkgkgggrsgsnddkgsdetaetgtiAgivsavamAlvGAvssYi 135
                 +g ++gg++gg+     dl+d+ ++ +    k+ gg ++g++ d+g+ ++  +g++ giv ava  ++ A+s++ 
  EHT99144.1  22 QGGNSGGNKGGKeSGPPDLDDIFRKLS----KKLGGFGGGNKGDNGQRSSGGSGKLFGIV-AVAAVVIWAASGFY 91 
                 344444555554045679999999885....778888899999999999999*******9.79999999*99986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
      CD99L2  69 seggtfsdddledvaegggykPDkgkgggrsgs 101
                 +   + sd++     +  +y+PD   +++r  +
  EHT99144.1 368 TALPSLSDQSASRT-DTSSYSPDSIMDQRRANA 399
                 33344555555444.445699997777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3217.93
//
Query:       EHT99145.1  [L=426]
Description: putative GTPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-30  104.1   0.0    1.1e-29  102.9   0.0    1.7  1  GTP-bdg_N     GTP-binding GTPase N-terminal
    1.6e-28   99.1  12.7    1.6e-28   99.1  11.3    1.8  1  GTP-bdg_M     GTP-binding GTPase Middle Region
    1.4e-21   76.6   0.1    4.8e-21   75.0   0.1    1.8  2  MMR_HSR1      50S ribosome-binding GTPase
      8e-07   28.7   0.1    1.2e-06   28.1   0.1    1.3  1  FeoB_N        Ferrous iron transport protein B
    1.1e-05   25.5   0.0        0.1   12.5   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    0.00016   21.2   0.9    0.00099   18.6   0.9    2.0  1  Arf           ADP-ribosylation factor family
     0.0023   17.5   0.0       0.73    9.3   0.0    2.3  2  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0071   16.4   0.1      0.034   14.2   0.1    2.0  1  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.022   14.8   0.0    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
      0.018   14.5   0.0      0.031   13.7   0.0    1.3  1  SRPRB         Signal recognition particle receptor beta subun
      0.019   15.5   0.0       0.09   13.3   0.0    2.1  2  ABC_tran      ABC transporter
      0.024   14.2   3.1        0.4   10.2   0.5    2.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.026   13.9   0.0      0.046   13.1   0.0    1.4  1  TniB          Bacterial TniB protein
      0.026   14.2   0.0      0.075   12.8   0.0    1.8  1  AAA_29        P-loop containing region of AAA domain
      0.028   14.7   0.1       0.43   10.8   0.1    2.3  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.034   14.7   0.3      0.086   13.3   0.0    1.8  1  AAA_23        AAA domain
      0.042   13.0   0.0        2.5    7.2   0.0    2.2  2  G-alpha       G-protein alpha subunit
      0.047   13.0   0.0      0.072   12.4   0.0    1.2  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
      0.099   12.4   0.8       0.26   11.0   0.2    1.7  2  ATP_bind_1    Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> GTP-bdg_N  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   1.2e-32   1.1e-29       2      89 .]      25     112 ..      24     112 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 1.2e-32
   GTP-bdg_N   2 esleEleeLaktaglevvgevvqkrekpdpatyiGkGkveeikelveeeeadlvifddeLspsqqrnLekelevkViDRtqLILdIFA 89 
                 e+l+E+e L+++ag+e ++ v+ +r++p+p++++G+Gk+ ei+++v++  a++v+fd+ L+p+q+rnLe+ +e++ViDRt LILdIFA
  EHT99145.1  25 EDLQEFETLVSSAGVEALQVVTGSRKAPHPKYFVGEGKAVEIADAVKTSGASVVLFDHALTPAQERNLERLCECRVIDRTGLILDIFA 112
                 689************************************************************************************8 PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1  11.3   1.7e-31   1.6e-28       1      79 []     114     192 ..     114     192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 1.7e-31
                 H--SHHHHHHHHHHHHHHHHHHHCXXXXXXXXX..X..XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.....T CS
   GTP-bdg_M   1 rArtkeaklQVelAqlkyllprLeglgkelsrqgGgigtrGpGetkleldrrlireriaklkkeLekvkkkrelqrkkR 79 
                 rArt+e+klQVelAql++l +rL++ +++l+rq+Ggig+rGpGet+le+drrl+r ri+++ ++Le+v+k+re+ r++R
  EHT99145.1 114 RARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRGRISQILSRLERVEKQREQGRQAR 192
                 9***************************************************************************998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.9   2.7e+03      46      69 ..      96     127 ..      67     142 .. 0.61
   2 !   75.0   0.1   5.1e-24   4.8e-21       2     114 .]     200     318 ..     199     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
                 EEEEEEECGGCS.....SHHHHHH...HHHHH CS
    MMR_HSR1  46 keielvDtpGli.....egaseek...glgka 69 
                  e++++D  Gli     ++a++++   +++ a
  EHT99145.1  96 CECRVIDRTGLIldifaQRARTHEgklQVELA 127
                 35788888897654444233333321333333 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 5.1e-24
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHH....HHCTSEEEEEEETT....TTCSH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkafla....leeadlillvvdas....eeklk 91 
                 v +vG++N+GKStL+na+t +++ ++d+ ++T+d++ +r+++ +  e++l+Dt+G+i   +  ++l  af+a     ++a l+++v+da+    +e+++
  EHT99145.1 200 VSLVGYTNAGKSTLFNAITSANVYAADQLFATLDPTLRRLNVADvGEVVLADTVGFIR--HLPHDLVAAFKAtlqeTRQATLLMHVIDAAdvrvNENID 296
                 89***************************************88889*********887..55666666666533226679********98777655676 PP

                 HHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  92 pldeeleelleeakkplilvlnk 114
                 +++e lee+ e +++p +l++nk
  EHT99145.1 297 AVNEVLEEI-EADEIPALLIMNK 318
                 665555555.459999****998 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   1.3e-09   1.2e-06       2     149 ..     199     350 ..     198     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.3e-09
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGH..HHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnl..ernLyL 97 
                 tv lvG  n+Gk+tlfna+t a+ + +     t + +  +l++++  ev + D  G     ++        ++  ++++ ++++v+da+ +  + n+  
  EHT99145.1 199 TVSLVGYTNAGKSTLFNAITSANVYAADQLFATLDPTLRRLNVADvGEVVLADTVGFIRHLPHDLVAAFKATLQETRQATLLMHVIDAADVrvNENIDA 297
                 689***************************************99989*********966655555555555555566788999*****97611567777 PP

                 HHHHHH.T...TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTH CS
      FeoB_N  98 tlqlle.l...gvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegi 149
                 + ++le +   ++p +l++n+id ++  + +id ++  ++L v v  +sa+++ gi
  EHT99145.1 298 VNEVLEeIeadEIPALLIMNKIDMLDGFEPRIDRDE--NNLPVRV-WLSAQTGAGI 350
                 7776652222358999*********99999999874..5555554.3556666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00011       0.1      89     134 ..     187     232 ..     161     258 .. 0.69
   2 !   10.5   0.0   0.00043      0.41      29     100 ..     292     360 ..     268     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                  THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S------ CS
  RsgA_GTPase  89 gleelkellkdktsvlvGqSGvGKStLinallpelelktgevsekl 134
                  + ++ +++ +  t+ lvG + +GKStL na+++ +  +  ++ ++l
   EHT99145.1 187 QGRQARAKADVPTVSLVGYTNAGKSTLFNAITSANVYAADQLFATL 232
                  444555666668999*****************98766666555544 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00043
                  T--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdk 100
                  + + + ++ +L ++e+ +i+ ++++nKiD+l+  e   ++  + ++l ++v  +sa+t++g+  l ++l+++
   EHT99145.1 292 NENIDAVNEVLEEIEADEIPALLIMNKIDMLDGFE--PRIDRDENNLPVRVW-LSAQTGAGIPLLWQALSER 360
                  456778999**********************9988..566666666655554.5677788888777777765 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9     1e-06   0.00099      19     130 ..     202     324 ..     189     336 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1e-06
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTE.EEEEEEE-S.....SGGGGGGGGGGCTTE...SEEEEEEETT-CTTHHHHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknl.kftvwDvGG.....qeklRplWknYfekt...davifvvDsadreRleeakeeLk 105
                 l+G  naGK+T+ + +++ ++        T+ ++ ++l++ ++ ++ + D  G      + l   +k  +++t   + +++v+D+ad  R++e  + ++
  EHT99145.1 202 LVGYTNAGKSTLFNAITSANVYAadqLFATLDPTLRRLNVADVgEVVLADTVGfirhlPHDLVAAFKATLQETrqaTLLMHVIDAADV-RVNENIDAVN 299
                 78999*******99999887754333899**********999945667786662222213345566666666522146899***9996.9********* PP

                 HHCTSGCCTTSEEEEEEE-TTSTTS CS
         Arf 106 alleeeelkevallvlaNKqDlpea 130
                 ++lee e  e++ l++ NK+D+ + 
  EHT99145.1 300 EVLEEIEADEIPALLIMNKIDMLDG 324
                 *********************9875 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0091       8.6       4      26 ..     198     220 ..     195     230 .. 0.85
   2 !    9.3   0.0   0.00077      0.73      91     138 ..     274     328 ..     265     370 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0091
                 EEEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyk 26 
                  +++++g +++GK+TL  +++ +
  EHT99145.1 198 PTVSLVGYTNAGKSTLFNAITSA 220
                 678999************99865 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00077
                 HHT-SEEEEEEETTTB....STHHHHHHHHHHHHTTTEEEEEEESCGST...HHH CS
    GTP_EFTU  91 lrvlDgavlvvdaveG....vepqteevlrlalkegvpiivfiNKmDrl...kae 138
                 +r++ + + v+da++          +evl+ + + ++p  +++NK+D+l   + +
  EHT99145.1 274 TRQATLLMHVIDAADVrvneNIDAVNEVLEEIEADEIPALLIMNKIDMLdgfEPR 328
                 6777777778888754322234457899999*****************9655333 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.6e-05     0.034       1      36 [.     200     235 ..     200     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.6e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36 
                 + +vG +++GKS++ na++ +++   ++   T  p+
  EHT99145.1 200 VSLVGYTNAGKSTLFNAITSANVYAADQLFATLDPT 235
                 679*******************99999988887776 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.3e-05     0.022      27     100 ..     282     357 ..     265     362 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
  MMR_HSR1_Xtn  27 ykihnaevliredvtvDdlidvieg.nrvYipclyvlNKiDlisleeldelare....pnsvviSaekelnldeLkeki 100
                   + i  a+v ++e++  D + +v+e+ +   ip+l+++NKiD+++  e  +++r+    p  v +Sa+++ ++  L +++
    EHT99145.1 282 HVIDAADVRVNENI--DAVNEVLEEiEADEIPALLIMNKIDMLDGFEP-RIDRDennlPVRVWLSAQTGAGIPLLWQAL 357
                   55778999998876..566666655456679***********876554.334431234667778999998887666655 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.3e-05     0.031       3     121 ..     197     318 ..     195     326 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-05
                 --EEEEE-STTSSHHHHHHHHHHSS---B...---SS-EEETTG...GGTT-SEEEETT-GC.....CSHHHHHHHHHHGGEEEEEEEEETTS-..HHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkkt...vtSqessaalkvksekgskltliDfPGhek.....lrqklleklkaksslkglvfvvDStid..pke 91 
                  p+v lvG +++GK +lf+ +t+ +v  +    + ++++   +++  +  ++ l+D  G  +     l   ++ +l++ +++  l++v+D++    + +
  EHT99145.1 197 VPTVSLVGYTNAGKSTLFNAITSANVYAAdqlFATLDPT-LRRLNVADVGEVVLADTVGFIRhlphdLVAAFKATLQETRQATLLMHVIDAADVrvNEN 294
                 58999*****************99554431003333443.34556677789999999996433222266667778888899999******873211445 PP

                 HHHHHHHHHHHHHHHHHHTT---EEEEEE- CS
       SRPRB  92 vkevAEllyeilliteklkdavdiliACnK 121
                 +  v E l ei  +      +++ l+  nK
  EHT99145.1 295 IDAVNEVLEEIEAD------EIPALLIMNK 318
                 66666666665544......3444444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.9   2.7e+03      28      52 ..     108     138 ..     106     192 .. 0.58
   2 ?   13.3   0.0   9.6e-05      0.09      13      42 ..     199     228 ..     195     322 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.9
                 HHHHTTSS--SEEEEEETTCEGGG......B CS
                 xxxxxxxxxxxxxxxxxxxxxxxx......x RF
    ABC_tran  28 lkllagllkpteGeilldgkdlke......q 52 
                 l ++a+  +  eG+++++ ++l++      +
  EHT99145.1 108 LDIFAQRARTHEGKLQVELAQLRHlatrlvR 138
                 6677777777888887777777773333331 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 9.6e-05
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGei 42 
                 +v +vG + aGKStL+++++     +++++
  EHT99145.1 199 TVSLVGYTNAGKSTLFNAITSANVYAADQL 228
                 689****************99877777766 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.029        28       2      22 ..     199     219 ..     198     232 .. 0.84
   2 ?   10.2   0.5   0.00042       0.4      81     154 ..     243     323 ..     223     337 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.029
                 EEEEEESTTCCHHHHHHHHHC CS
        cobW   2 vtvltGflGsGKTtLlnhlle 22 
                 ++ l+G+  +GK+tL n++++
  EHT99145.1 199 TVSLVGYTNAGKSTLFNAITS 219
                 6789*************9984 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00042
                 TT-SEEEEEECT..TTTHHHH.HTTSHHHHHCCCECEEEEEEETTTH..CCHCCHHHHHHHHHHT...SSEEEEE-HHHHC CS
        cobW  81 erldviliEttG..laePapv.afteeelksdltldavvavvDaknl.eaeeekieekaedqlaa...adllvlnKtDlld 154
                 +  +v+l  t+G     P  + a  + +l++  +++ ++ v+Da+ +  +e+ +  +++ ++++a     ll++nK+D+ld
  EHT99145.1 243 DVGEVVLADTVGfiRHLPHDLvAAFKATLQETRQATLLMHVIDAADVrVNENIDAVNEVLEEIEAdeiPALLIMNKIDMLD 323
                 36789999999952234666655559999999999999******999744555556666666654111569*******997 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.9e-05     0.046      15     122 ..     170     291 ..     158     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
        TniB  15 rakeilerLeeLleypk.......rkrmpnlllvGdsnnGKtmivekFarlhppek.......dedaekvpvlvvqappkpdekrlyaaiLealgaplk 99 
                 r+ +il+rLe++ +  +       + ++p + lvG +n GK+++++  ++ +  +        d++ ++++v  v     +d+ ++ +++ + l a +k
  EHT99145.1 170 RISQILSRLERVEKQREqgrqaraKADVPTVSLVGYTNAGKSTLFNAITSANVYAAdqlfatlDPTLRRLNVADVGEVVLADTVGFIRHLPHDLVAAFK 268
                 666777777777665441111111556799**************9998877754430111112344457788888888899999999999999999999 PP

        TniB 100 ararvskleqqvlrllrelkvrv 122
                 a+ + +++    ++++++ +vrv
  EHT99145.1 269 ATLQETRQATLLMHVIDAADVRV 291
                 99999999999999999999997 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.9e-05     0.075      15      44 ..     189     219 ..     175     228 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-05
      AAA_29  15 htieidlkg.atlltGpsGsGKSTllDAiqa 44 
                 ++++ + +  ++ l+G + +GKSTl+ Ai+ 
  EHT99145.1 189 RQARAKADVpTVSLVGYTNAGKSTLFNAITS 219
                 5555554446789***************986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00046      0.43       2     120 .]     200     321 ..     199     321 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00046
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCT..TTT-HHHH......CTSCEEEEEEE...G CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerf..rslhplyl......reaalailvyd...s 89 
                 v lvG +++GK++l++ +++ ++    +    +d + +++ ++        v +  + + Dt G  r   + l   +       r+a l++ v+d    
  EHT99145.1 200 VSLVGYTNAGKSTLFNAITSANVYAADQLFATLDPTLRRL-NVAD------VGE--VVLADTVGFIRHlpHDLVAAFKatlqetRQATLLMHVIDaadV 289
                 6799****************99988888777777665554.3332......222..3345666643321133444443222221455555556664333 PP

                 HHHHCHHHHHHHHHHH.CSSS-EEEEEE-TTT CS
         Roc  90 rssenlkeWlkelkkv.agkspvilvgnkiDl 120
                 r +en++   + l++  a+++p++l++nkiD+
  EHT99145.1 290 RVNENIDAVNEVLEEIeADEIPALLIMNKIDM 321
                 34456555555555542457799999999995 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.1e-05     0.086      23      42 ..     201     220 ..     196     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.1e-05
      AAA_23  23 lItGpNGaGKTTildAikla 42 
                  ++G + aGK+T+++Ai+ a
  EHT99145.1 201 SLVGYTNAGKSTLFNAITSA 220
                 689**************976 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0027       2.5       6      44 ..     180     218 ..     176     238 .. 0.86
   2 ?    3.5   0.0     0.034        32     248     282 ..     288     322 ..     264     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0027
                 XXXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha   6 aidkslkaerkarkkkrevkllllGqseSGKsTilkqlk 44 
                 +++k+ ++ r+ar k+   ++ l+G    GKsT+++ + 
  EHT99145.1 180 RVEKQREQGRQARAKADVPTVSLVGYTNAGKSTLFNAIT 218
                 6788888889999998888****************9886 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.034
                 SBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHHH CS
     G-alpha 248 vnrleeslklFkeicnnkllkntpiiLflnKlDil 282
                   r++e ++  +e++++ +  ++p +L++nK+D+l
  EHT99145.1 288 DVRVNENIDAVNEVLEEIEADEIPALLIMNKIDML 322
                 557788888889999999999************98 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.6e-05     0.072       3     124 ..     201     322 ..     199     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.6e-05
   Gtr1_RagA   3 LLmGksgsGKtsmrsiiF.dnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvg...vliyVfDvesreleedlet 97 
                  L+G  ++GK+++ + i  +n+ a d  +l at d +  ++++ +  ++ l D  G  + + + l    +  +++      l++V+D+ +  ++e+++ 
  EHT99145.1 201 SLVGYTNAGKSTLFNAITsANVYAAD--QLFATLDPTLRRLNVADVGEVVLADTVGFIRHLPHDLVAAFKATLQETRqatLLMHVIDAADVRVNENIDA 297
                 599*********98766516777777..688999**999999999999********9999988776666555544333339********99******** PP

   Gtr1_RagA  98 lkeilealrqyspeakvfvlihKmDli 124
                  +e+le++     e+    +++K+D++
  EHT99145.1 298 VNEVLEEIEA--DEIPALLIMNKIDML 322
                 *******986..456667788888877 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.54   5.1e+02       2      19 ..     203     220 ..     202     238 .. 0.75
   2 ?   11.0   0.2   0.00027      0.26      67     170 ..     220     323 ..     216     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.54
  ATP_bind_1   2 vGpaGsGKttfvgalsei 19 
                 vG   +GK+t+ +a+++ 
  EHT99145.1 203 VGYTNAGKSTLFNAITSA 220
                 78999*******999875 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00027
  ATP_bind_1  67 alvvaleflresldwldeelekeed.dyllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltd..ptkfisgllsalsamlrlelPhvv 161
                 a v+a++ l  +ld   ++l+  +  + +l Dt G i+   h  + a +  +L++ + a+  ++++D+  ++    ++ ++++l     +   e+P + 
  EHT99145.1 220 ANVYAADQLFATLDPTLRRLNVADVgEVVLADTVGFIRHLPHDLVAA-FKATLQEtRQATLLMHVIDAADVRVneNIDAVNEVL---EEIEADEIPALL 314
                 7799*********99999995555589************99988777.999***99***********98655422777777755...555567****** PP

  ATP_bind_1 162 vlnkfDllk 170
                 ++nk+D+l+
  EHT99145.1 315 IMNKIDMLD 323
                 *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2848.52
//
Query:       EHT99146.1  [L=104]
Description: RNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-31  106.4   0.1    5.4e-31  106.1   0.1    1.1  1  Hfq       Hfq protein
     0.0028   17.3   0.0     0.0038   16.9   0.0    1.3  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.1     6e-35   5.4e-31       1      64 []       7      69 ..       7      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 6e-35
                HHHHHHHHHHHCT-EEEEEETTS-EEEEEEEEE-SSEEEEEETTEEEEEEGGGEEEEEESS--- CS
         Hfq  1 lQdafLnqlrkekipvtifLvnGiklkGviksfDnftvlLesdgkqqlvYKhaistivparpvs 64
                lQd fLn+lr+e++pv+i+LvnGikl+G+i+sfD+f++lL+++   q+vYKhaist+vp+rpvs
  EHT99146.1  7 LQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT-VSQMVYKHAISTVVPSRPVS 69
                8***************************************666.688**************985 PP

>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.2e-07    0.0038       9      32 ..      20      43 ..      10      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.2e-07
                SEEEEEETTSEEEEEEEEEEETTS CS
         LSM  9 kkvtvelkngrelrGtLkgfDqfm 32
                  v + l ng +l G++++fDqf+
  EHT99146.1 20 VPVSIYLVNGIKLQGQIESFDQFV 43
                357999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 850.85
//
Query:       EHT99147.1  [L=316]
Description: delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-83  279.5   0.0    2.8e-83  279.2   0.0    1.0  1  IPPT            IPP transferase
    2.5e-06   27.1   0.0    5.5e-06   25.9   0.0    1.5  2  IPT             Isopentenyl transferase
    4.4e-05   23.7   0.0    0.00017   21.8   0.0    2.0  1  AAA_33          AAA domain
    0.00065   20.1   0.9     0.0016   18.8   0.1    2.3  2  AAA_16          AAA ATPase domain
     0.0033   16.7   0.0     0.0082   15.4   0.0    1.6  2  Zeta_toxin      Zeta toxin
  ------ inclusion threshold ------
      0.016   14.5   0.0      0.022   14.0   0.0    1.1  1  TIP49           TIP49 P-loop domain
      0.039   13.7   0.0       0.11   12.2   0.0    1.7  2  Cytidylate_kin  Cytidylate kinase
      0.049   14.2   0.0      0.092   13.3   0.0    1.5  1  AAA_18          AAA domain
      0.056   13.7   0.0       0.16   12.2   0.0    1.8  2  AAA_22          AAA domain
       0.15   11.8   0.0       0.31   10.8   0.0    1.5  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.2   0.0   1.6e-86   2.8e-83       2     227 ..      46     292 ..      45     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: 279.2 bits;  conditional E-value: 1.6e-86
                 TBTT-HTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTG-S--B--HHHHHHHHHHHHHSHHHH CS
        IPPT   2 vYrgmdIgTakptaeeragvphhlidildpdeeysvadFqkdalkaieeilargkipilvGGTglYikallegldelpeadeelraeleeeaeeeglea 100
                 +Yr+m+IgTakp+aee+a +ph+l+di+dp e+ys+a+F++dal+ +++i+++g+ip+lvGGT+lY+kallegl+ lp+ad+++r+++e+ a+e+g+ea
  EHT99147.1  46 IYREMNIGTAKPSAEELALAPHRLLDIRDPAEAYSAAEFRRDALAEMADIVQHGRIPLLVGGTMLYFKALLEGLSPLPSADPDVRQKIEQMASEKGWEA 144
                 9*************************************************************************88**************99999**** PP

                 HHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH............ECEEEEEE.CSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH........ CS
        IPPT 101 lheelkevdpeaaakihpndrqRiiRalevyeetgkpls............ellvigle.sdreelyeridkRvdemleaGlleEveklla........ 178
                 lh++l e+dp+a ++ihpnd+qR+ Ralev+  +gk+l+            ++++++++ ++re l++ri+ R+d+ml++G+ +E ++l+a        
  EHT99147.1 145 LHRQLCEIDPVAGSRIHPNDPQRLSRALEVFFISGKTLTeltkisgealpyDVHQFAIApASRELLHQRIALRFDQMLASGFEAESRALFArgdlhtdm 243
                 ************************************9998888889988876799999956*****************************888888875 PP

                 CCCCSTTSHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCE CS
        IPPT 179 kalqaigykelleylegelsleeaieklkaatrqyaKrQltWfrkkkei 227
                 ++++++gy+++++yl+ge++++e++ ++  atrq+aKrQ+tW+r +++i
  EHT99147.1 244 PSIRCVGYRQMWSYLAGEIDYDEMVYRGVCATRQLAKRQMTWLRGWENI 292
                 58******************************************99876 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.1e-09   5.5e-06       5      99 ..      14     108 ..      10     122 .. 0.78
   2 ?   -2.7   0.0       1.7   3.1e+03     137     181 ..     216     257 ..     193     278 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.1e-09
         IPT   5 lifGatttGKtaeaiklaketgapvivlDRvqcyselavgsGrpleeelegtrRiylddrslseGvidaeeanerLikevesykdeeglilEGGS 99 
                  ++G+t++GKta ai+l k+  + +i++D    y e+ +g+ +p++eel       ld r  +e    ae   + L +  +  ++++  +l GG 
  EHT99147.1  14 FLMGPTASGKTALAIELRKQLPVELISVDSALIYREMNIGTAKPSAEELALAPHRLLDIRDPAEAYSAAEFRRDALAEMADIVQHGRIPLLVGGT 108
                 689**********************************************9887777887777776666666666665555555545555555555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
         IPT 137 kRvrqmlrpeeegaslldElaelwkepkarailedid..Gyryildy 181
                  R  qml+      ++  E  +l+++ + ++ + +i   Gyr++ +y
  EHT99147.1 216 LRFDQMLAS-----GFEAESRALFARGDLHTDMPSIRcvGYRQMWSY 257
                 455666655.....344455666777777776666633377777666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   9.5e-08   0.00017       2      79 ..      13     109 ..      13     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.5e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt...lrrrlfg.tdqqskt.................dytrvldrlyqilnelarkalsagrnvildatn 79 
                 ++l G+ +sGK+ la +l k+l+++l+s d+   + r +   t ++s +                  y+ +++  ++ l+e+a++++  ++++++  t+
  EHT99147.1  13 IFLMGPTASGKTALAIELRKQLPVELISVDSaliY-REMNIgTAKPSAEelalaphrlldirdpaeAYSAAEF-RRDALAEMADIVQHGRIPLLVGGTM 109
                 6899**************************97642.3333346666666566666666665544433333333.3446667777777777777777774 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   9.1e-07    0.0016      21     107 ..       7     121 ..       3     240 .. 0.69
   2 ?   -3.4   0.1       5.9   1.1e+04     142     154 ..     290     302 ..     276     311 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.1e-07
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdqlesa....ipysa.laqalareellrqlldeaesaeleawrekleeala.... 106
                 +grp +++l G+ ++GK++l+ el+++l  +    +           e++     p +  la a    + l ++ d+ae+ +++++r+  ++++a    
  EHT99147.1   7 AGRPKAIFLMGPTASGKTALAIELRKQLPVElisvD-----SALIYREMNigtaKPSAEeLALAP---HRLLDIRDPAEAYSAAEFRRDALAEMAdivq 97 
                 79************************9988733331.....222222222111122222222222...4455555555555555555555555555666 PP

      AAA_16 107 .......................a 107
                                        +
  EHT99147.1  98 hgripllvggtmlyfkalleglsP 121
                 666666665555555555555551 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.9
      AAA_16 142 Ddlqwadeaslql 154
                 ++++w+d++  +l
  EHT99147.1 290 ENIHWLDSDEPHL 302
                 5788999876655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.6e-06    0.0082      12      40 ..       6      34 ..       2      51 .. 0.85
   2 ?   -3.5   0.0       2.9   5.3e+03     106     123 ..     126     143 ..     125     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
  Zeta_toxin 12 sqerPklillgGqpGAGKselaellkdel 40
                +  rPk+i+l G +++GK++la +l+++l
  EHT99147.1  6 QAGRPKAIFLMGPTASGKTALAIELRKQL 34
                458*******************9999987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.9
  Zeta_toxin 106 spdvvkklaealkkaGYe 123
                 +pdv +k+ + + ++G+e
  EHT99147.1 126 DPDVRQKIEQMASEKGWE 143
                 789999999999999986 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-05     0.022      51      84 ..      11      42 ..       2      54 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 51 ravLlaGpsgtGktalaiaiskelgedvpfvals 84
                +a+ l Gp+++Gktalai + k+l   v  +++ 
  EHT99147.1 11 KAIFLMGPTASGKTALAIELRKQLP--VELISVD 42
                79*******************9997..4445555 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.4e-05      0.11       3      38 ..      15      52 ..      13     104 .. 0.85
   2 ?   -1.2   0.0      0.79   1.4e+03      67     106 ..     173     214 ..     124     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.4e-05
                    EE-STTSSHHHHHHHHHHHHT-EEE..EHHHHHHHHHH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyl..dtgalYRalal 38
                    + GP++sGK ++a +l ++l ++++  d++ +YR +  
      EHT99147.1 15 LMGPTASGKTALAIELRKQLPVELIsvDSALIYREMNI 52
                    66******************98875338999***9865 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.79
                     EEEEETTEE-TTG..GGSHHHHHHHHHHTTSHHHHHHHHHHH CS
  Cytidylate_kin  67 ekvllngedveee..lrsdevekavSavaaipavRailvkkl 106
                     e++++ g+ ++e   ++ +++   v ++a  pa R+ l +++
      EHT99147.1 173 EVFFISGKTLTELtkISGEALPYDVHQFAIAPASRELLHQRI 214
                     456677777766444777888888888888888888877765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.1e-05     0.092       1      24 [.      13      36 ..      13      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf 24
                I+l+G+ ++GKt la eL+k l +
  EHT99147.1 13 IFLMGPTASGKTALAIELRKQLPV 36
                99******************9844 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     9e-05      0.16       5      42 ..      10      38 ..       6     105 .. 0.75
   2 ?   -2.4   0.0       2.9   5.1e+03      47      79 ..     136     169 ..     108     182 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpev 42
                 + ++++G++ +GKT l+ +l++ql+ e         +
  EHT99147.1 10 PKAIFLMGPTASGKTALAIELRKQLPVE---------L 38
                57899********************643.........3 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.9
      AAA_22  47 lpsstsskdllrellralglelka.erlsseell 79 
                 ++s+++++ l r+l+++  + +++  +++ ++l 
  EHT99147.1 136 MASEKGWEALHRQLCEIDPVAGSRiHPNDPQRLS 169
                 3445577777777777655544445455555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.31       2      24 ..      11      33 ..      10      48 .. 0.90
   2 ?   -4.0   0.0       6.3   1.1e+04      13      31 ..     179     198 ..     178     200 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
   PduV-EutP  2 kkilliGkvgsGKttLtqalkge 24
                k i+l+G++ sGKt+L+ +l+++
  EHT99147.1 11 KAIFLMGPTASGKTALAIELRKQ 33
                789*************9999874 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.3
   PduV-EutP  13 GKt.tLtqalkgeelkYkkt 31 
                 GKt t   +++ge+l Y+  
  EHT99147.1 179 GKTlTELTKISGEALPYDVH 198
                 67633445789999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2565.79
//
Query:       EHT99148.1  [L=614]
Description: methyl-directed mismatch repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-38  130.8   0.0      3e-38  130.2   0.0    1.3  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    2.1e-27   95.7   2.5    4.1e-27   94.7   2.5    1.5  1  MutL_C          MutL C terminal dimerisation domain
    4.6e-13   49.2   0.1    8.2e-13   48.4   0.1    1.4  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    8.2e-08   32.7   0.0    2.1e-07   31.5   0.0    1.7  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l


Domain annotation for each model (and alignments):
>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   6.6e-42     3e-38       3     118 ..     214     329 ..     212     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 6.6e-42
                     HHHHHHHHCCEEEEEEEETTEEEEEEEE-CCG-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSSTT--- CS
  DNA_mis_repair   3 avlgkevaenlleiekeeeqlkieGfiskpelsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNvhPtKre 97 
                     a++g+++++++l+i+ ++++l ++G++++p  sr+ +d q+++vNgR++++k +++air+a++++l+ +++p++vL+l+idp++vDvNvhP+K+e
      EHT99148.1 214 AICGTTFMQHALRIDWQHDDLALRGWVADPAGSRQISDIQYCYVNGRMMRDKFINHAIRQAFQSQLQDDQQPAYVLYLTIDPHQVDVNVHPAKHE 308
                     89********************************************************************************************* PP

                     -EETTHHCHHHHHHHHHHHHH CS
  DNA_mis_repair  98 Vrfqdeeevieaieealkeal 118
                     Vrf++++ v+++i++ + ++l
      EHT99148.1 309 VRFHQSRLVHDFIYQGVMSVL 329
                     ****************99887 PP

>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   2.5   9.3e-31   4.1e-27       2     139 ..     434     564 ..     433     569 .. 0.94

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 9.3e-31
                 T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHSSB-EEEEEEEEEEE--HHHHHHHHHCHHHHHHCT-EEEE-STTEEEEEEEECCC CS
      MutL_C   2 lGkalgqvhgtyilaenedglvlvDqhaAherilyeklkeqlkeeelksQpLliPlvlelspeeaalleehkeeLaklGfeleefgpnslivravPall 100
                 +G++l +++++y+++e++++l l+ ++ A +++++ +l  q     lk+QpLliP+ l++ + e ++++++ ++L+++G++l++ +++++i+ravP++l
  EHT99148.1 434 FGRVLTVLADQYAVLEQDQTLLLLALPVAARWLKQAQLEPQEGG--LKAQPLLIPVRLKIASAERKAAQDNLSLLNQMGIDLHP-KGDHIILRAVPLPL 529
                 89*************************************88887..7************************************5.788*********** PP

                 TTTSHHHHHHHHHHHHCCCSS-H-HCCHHHHHHHHCTTS CS
      MutL_C 101 rqqnleelirelleelaekgkesleekleellatmachs 139
                 r qnl+ li+ell +la ++    e++  +l++++a + 
  EHT99148.1 530 RTQNLQILIPELLGYLARQQ----ENSATQLAQWLARRE 564
                 ******************99....378999999999886 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   1.8e-16   8.2e-13       4     101 ..      24     121 ..      20     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.8e-16
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakr...kstslGkkGiGlklAslslgkkltvitkkege 97 
                   +++ elv+NsldA a+++++ ++k    ++ i+i+D+G G+ ++el  al r ats+  +        slG +G    lAs+s+ ++lt+++++ ++
   EHT99148.1  24 ASVVKELVENSLDAGATRIDVDIEKG--GAKLIRIRDNGCGIAKDELAMALaRHATSKIASLDdleAIMSLGFRG--EALASISSVSRLTLTSRTAEQ 117
                  689**********************5..689******************99445555555444221345566666..66***************9998 PP

  HATPase_c_3  98 sstl 101
                  s++ 
   EHT99148.1 118 SEAW 121
                  8765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.6e-11   2.1e-07       5      68 ..      22      88 ..      18     138 .. 0.66

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.6e-11
                HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH......HCSTC CS
   HATPase_c  5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq......ddstk 68
                r   ++++lv+N++++   a++i+v i+ + + + i+++DnG+Gi k++l +  +++ +      dd ++
  EHT99148.1 22 RPASVVKELVENSLDA--GATRIDVDIE-KGGAKLIRIRDNGCGIAKDELAMALARHATskiaslDDLEA 88
                66789**********6..799*******.448*******************7777555545555633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4995.17
//
Query:       EHT99149.1  [L=558]
Description: N-acetylmuramoyl-l-alanine amidase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-45  153.8   0.0      8e-45  153.1   0.0    1.4  1  Amidase_3   N-acetylmuramoyl-L-alanine amidase
    5.1e-28   96.9   0.0    6.9e-13   48.4   0.0    2.6  2  LysM        LysM domain
      3e-08   33.7   0.4    6.6e-08   32.6   0.4    1.6  1  AMIN        AMIN domain
     0.0067   16.2   0.3        4.4    7.2   0.1    2.6  2  HTH_23      Homeodomain-like domain
  ------ inclusion threshold ------
      0.043   13.9   0.4        2.4    8.3   0.0    2.5  2  HTH_28      Helix-turn-helix domain
      0.049   13.2   0.1        7.5    6.2   0.1    3.3  4  Sigma70_r4  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0   2.7e-48     8e-45       1     174 [.     187     406 ..     187     407 .. 0.99

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 2.7e-48
   Amidase_3   1 ividpGHGgkdpGavgknglkEkdlnlkvalklaklLeakg.aeVvltrdddksvslkeranianksradlfvsiHadsaanssasGvevfy....... 91 
                 ++id+GHGg+dpGa+g++glkEk++++++a+kl+ lL+++  ++ vltrd d+++s+  r+++a+k++a+++vsiHad+a++ +a+G++v++       
  EHT99149.1 187 VAIDAGHGGQDPGAIGQHGLKEKNVTIAIARKLKVLLNNDPmFKGVLTRDGDYFISVMGRSDVARKANANVLVSIHADAAPSHAATGASVWVlsnrran 285
                 78************************************************************************************************* PP

   Amidase_3  92 .......................................leknekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpe 151
                                                        l+  ++++  +++a ++ ++l+  + l++r  ++a+ l vlr+++ip+ lvE+gfisn  
  EHT99149.1 286 semanwleqkekqsellggagdllansqadpylsqavldLQFGHSQRVGYDIAVKVIQQLRGVTSLHKRLPEHAS-LGVLRSPDIPSLLVETGFISNAS 383
                 ***************************************************************************.*********************** PP

   Amidase_3 152 dakllkseeyqeklakaiaegik 174
                 +++ll s+++q+k+a++i++g+ 
  EHT99149.1 384 EERLLGSSAHQDKIAQSIYKGLR 406
                 *********************96 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.3e-16   6.9e-13       1      44 []     451     493 ..     451     493 .. 0.99
   2 !   45.9   0.0   1.5e-15   4.3e-12       1      44 []     514     556 ..     514     556 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.3e-16
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 +tV +G+TL++IA++yg+++ +l+++N l+ +  +++Gq+Lk+P
  EHT99149.1 451 HTVTRGETLSGIAAKYGVSMATLRQMNTLKRDV-VWVGQRLKVP 493
                 8********************************.*********9 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 1.5e-15
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 ++V +GD+L+sIA+ yg++ + +l+aNnl+s++ +  Gq LkiP
  EHT99149.1 514 HKVVRGDSLSSIAAHYGVSPKSILQANNLKSTN-VMLGQNLKIP 556
                 89*******************************.*********9 PP

>> AMIN  AMIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.4   2.2e-11   6.6e-08       7      90 ..      33     117 ..      27     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.2e-11
        AMIN   7 ddnt.elvletskaekykvftlsnpnrlviDlpnaelglelkriennkpgiksvrvvgqkdpntvRvvldldksvkpqepvrksg 90 
                  +n+  ++l+ s+++ y  f l np+r+v+D+ +  + + l      +  +k++r++  kd++ +R+v++l +s k ++ ++++g
  EHT99149.1  33 GGNQaTVTLSFSGQPVYAYFPLHNPDRVVLDIRQSGVIKGLPLTFSGDNIVKRIRTSTPKDKQSIRLVFELTQSGKTRAVTQRNG 117
                 345559**************************987777777678899999*****99999***********99766643334444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0015       4.4      17      36 ..     456     475 ..     447     481 .. 0.82
   2 !    6.4   0.0    0.0026       7.8      15      34 ..     517     536 ..     512     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0015
      HTH_23  17 GlsvreIAreLgvsrrTvyr 36 
                 G + + IA+++gvs  T+++
  EHT99149.1 456 GETLSGIAAKYGVSMATLRQ 475
                 9999*************996 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0026
      HTH_23  15 aeGlsvreIAreLgvsrrTv 34 
                  +G+s + IA+++gvs+  +
  EHT99149.1 517 VRGDSLSSIAAHYGVSPKSI 536
                 349*************9766 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.035     1e+02      11      30 ..     455     474 ..     447     475 .. 0.81
   2 ?    8.3   0.0   0.00081       2.4      10      29 ..     517     536 ..     512     539 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.035
      HTH_28  11 aGhsvreaArelgisrrtvy 30 
                 +G++ + +A+++g+s  t++
  EHT99149.1 455 RGETLSGIAAKYGVSMATLR 474
                 7888999********88887 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00081
      HTH_28  10 aaGhsvreaArelgisrrtv 29 
                  +G+s + +A+++g+s+ ++
  EHT99149.1 517 VRGDSLSSIAAHYGVSPKSI 536
                 5899*************987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.8   8.3e+03       6      17 ..      90     101 ..      90     106 .. 0.80
   2 ?    6.2   0.1    0.0025       7.5      19      39 ..     455     475 ..     448     478 .. 0.85
   3 ?   -1.3   0.0      0.53   1.6e+03      26      40 ..     486     500 ..     485     504 .. 0.86
   4 ?    2.7   0.0     0.031        92      19      34 ..     518     533 ..     509     539 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.8
                 -HHHHHHHHHHH CS
  Sigma70_r4   6 pererevlelrf 17 
                 ++++++ ++l+f
  EHT99149.1  90 TPKDKQSIRLVF 101
                 689999999998 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0025
                 TT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  19 eglTleEIgerlgiSrerVrq 39 
                 +g Tl+ I++++g+S  + rq
  EHT99149.1 455 RGETLSGIAAKYGVSMATLRQ 475
                 789************999888 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.53
                 HHHHHTS-HHHHHHH CS
  Sigma70_r4  26 IgerlgiSrerVrqi 40 
                 +g+rl ++ ++V ++
  EHT99149.1 486 VGQRLKVPASAVASR 500
                 79*******999776 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.031
                 TT--HHHHHHHHTS-H CS
  Sigma70_r4  19 eglTleEIgerlgiSr 34 
                 +g +l+ I++++g+S 
  EHT99149.1 518 RGDSLSSIAAHYGVSP 533
                 6779**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4407.31
//
Query:       EHT99150.1  [L=158]
Description: ATPase with strong ADP affinity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-39  135.0   0.0    1.6e-39  134.7   0.0    1.1  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.018   15.2   0.0    1.2  1  AAA_33           AAA domain
      0.088   12.9   0.0        0.1   12.7   0.0    1.2  1  Sigma54_activ_2  Sigma-54 interaction domain
       0.16   11.7   0.0       0.23   11.1   0.0    1.3  1  AAA_24           AAA domain
       0.26   10.6   0.1       0.38   10.1   0.1    1.2  1  ATPase           KaiC


Domain annotation for each model (and alignments):
>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.0   4.5e-43   1.6e-39       2     121 ..       9     131 ..       8     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 4.5e-43
                 SSHHHHHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE..SSEEEEE-TT-SSTHHHHHCTTCCCCSTSCEEEE CS
        TsaE   2 kseeetealgkklakal..gdvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYelekeglyHfDlYRledeeeleelgleeyleeeavvlv 97 
                 ++e++t +lg++la+a+  ++vi+L+GdLGaGKTt++rg+++a g+  +vkSPT+tlve+Y l+ +++yHfDlYRl+d+eele +g+++y++++a++lv
  EHT99150.1   9 PTEAATLDLGAQLAHACgrAAVIYLYGDLGAGKTTFSRGFLQASGHVgNVKSPTYTLVEPYVLDGRAVYHFDLYRLADPEELEFMGIRDYFTNDAICLV 107
                 57899**********9977778************************99*************998888************************9889**** PP

                 ETGGGGCCCS-S-CEEEEEEEETC CS
        TsaE  98 EWpekleellpeedleieleeeee 121
                 EWp++ + +lp  d+ ++l+  +e
  EHT99150.1 108 EWPQQGAGILPPPDIALTLRYVNE 131
                 **********98888887765444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0     5e-06     0.018       1      32 [.      30      62 ..      30     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5e-06
      AAA_33  1 lvllvGlpGsGKstlaerllkklg.avllssdt 32
                +++l G  G+GK+t++++ l++ g +  + s+t
  EHT99150.1 30 VIYLYGDLGAGKTTFSRGFLQASGhVGNVKSPT 62
                789999****************99733344444 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05       0.1       9      52 ..      16      59 ..      11     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                     HHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--S CS
  Sigma54_activ_2  9 elkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleif 52
                     +l  +L+ a  + ++++l G+ G+gk++++r + + sg + +++
       EHT99150.1 16 DLGAQLAHACGRAAVIYLYGDLGAGKTTFSRGFLQASGHVGNVK 59
                     567899*************************9988888766655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.5e-05      0.23       2      22 ..      28      48 ..      27      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.5e-05
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                ++ i +yG+ g+GKTt+ + +
  EHT99150.1 28 AAVIYLYGDLGAGKTTFSRGF 48
                67899************9876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00011      0.38      18      42 ..      27      51 ..      17      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
      ATPase 18 egrvvlitGepGtGKtifalqFlik 42
                +++v+ ++G+ G+GKt+f+  Fl  
  EHT99150.1 27 RAAVIYLYGDLGAGKTTFSRGFLQA 51
                568999****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1282.00
//
Query:       EHT99151.1  [L=506]
Description: putative carbohydrate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-71  240.3   2.9    2.1e-71  240.3   2.9    1.5  2  Carb_kinase   Carbohydrate kinase
      4e-42  144.0   0.1    8.5e-42  142.9   0.1    1.6  1  YjeF_N        YjeF-related protein N-terminus
    3.1e-05   23.5   1.7    7.3e-05   22.3   1.7    1.7  1  HK            Hydroxyethylthiazole kinase family
     0.0076   15.6   0.0      0.013   14.9   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3       2.3     1e+04       2      34 ..      64      96 ..      64      99 .. 0.80
   2 !  240.3   2.9   4.7e-75   2.1e-71       1     241 [.     257     493 ..     257     496 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.3
                 EEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEES CS
  Carb_kinase  2 lvigGsedytGAallaalaalrlgaglvsvate 34
                 lv++G  +  G ++  a  a ++g  ++  a++
   EHT99151.1 64 LVLCGHGNNGGDGYVVARLAQAAGKQVTLLACD 96
                 588999899999999999998888888777775 PP

  == domain 2  score: 240.3 bits;  conditional E-value: 4.7e-75
                  EEEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTTHTTTS...--SSS-SEEEE-TT-SSSHCHHHHCHHHCCCCS-EE CS
  Carb_kinase   1 vlvigGsedytGAallaalaalrlgaglvsvateseaiavlksylpevivhplledeqakileklerldavviGpGLgrdekikklleevlekdeplv 98 
                  +l+igG++ +tGA+ ++a+aalr g+glv+v+t++++ia++ ++ pev+v++l+ d +    +   ++d+++iGpGLg+ e+++++le+v ++++p++
   EHT99151.1 257 LLIIGGDSGTTGAIRMSAEAALRTGSGLVRVLTHKDNIAPILTARPEVMVDELT-DTRL--DDGIAWADVIAIGPGLGQREWGQNALEKVKSAEKPML 351
                  58****************************************************.4444..57788******************************** PP

                  EEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCH.HCCSHHHHHHHHHHHHTTEEEEESTTSEEEECTTEEEEE----GGG-STTHHHHHHH CS
  Carb_kinase  99 iDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivk.keddrlelarelaqklnavvllkgekdvivspegevlinstgssalakGGsGDvLaG 195
                  +DAd+Lnlla k   +e++++ i+TPh++E +rLl++    +e+drl++a+el++++++vv+lkg+ ++i+s+ g++   + g++++a+GG+GDvL+G
   EHT99151.1 352 WDADALNLLAIK---AEKRQNRIITPHPGEAARLLGVKTSeIESDRLHAAQELVKRYGGVVVLKGAGTIIASESGQMAFADVGNAGMASGGMGDVLTG 446
                  ***********8...9********************999889******************************************************** PP

                  HHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT-T.S-HCHHHHHH CS
  Carb_kinase 196 ligalLaqneasyeaaiaaawlhgaasdeaaekkgv.gmlatelski 241
                  +i++l+ q+ a ++aa+a++++hgaa+d+ a+  g+ gmla +l++ 
   EHT99151.1 447 IIASLMGQKLALFDAACAGCVAHGAAADKRAALWGTrGMLASDLFDL 493
                  *****************************99999999****999875 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.1   1.9e-45   8.5e-42       3     171 .]      40     199 ..      38     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 1.9e-45
      YjeF_N   3 eLmenagravaevlrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleeklsap 101
                 eLm +ag+av e + a++   p+++++lvl+G gnnGgdg+++Ar  + +g +Vt+l +  +++l+++a++a + + + gg++++  p+++++    ++
  EHT99151.1  40 ELMLRAGQAVYEHIMAHW---PEAQHWLVLCGHGNNGGDGYVVARLAQAAGKQVTLLACDGSKPLPDEARTARDGWLESGGEIHA--PDAAWP----EN 129
                 79****************...***************************************************************6..555555....36 PP

      YjeF_N 102 vdlviDAllGiglrgelreelaeliewlnsseapvlavDiPSGldadtGavsgtavkadvtvtfgapkrg 171
                 vd+++DAllG+g++++  e+l +li ++n+++apv+a+D+PSGl a++G+ +g+a +a++tv++ a+k+g
  EHT99151.1 130 VDVIVDALLGTGVSRAPVEPLSTLIAQINQHSAPVVAIDMPSGLSAENGMTPGEATEATHTVSVIALKPG 199
                 ********************************************************************97 PP

>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.7   1.6e-08   7.3e-05     124     244 ..     378     498 ..     293     500 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.6e-08
                 SSCCSCSSSSSS-SHHHHHHHHHHHHHHTSEEEEESSSEEEEESSE.EEEEE-S-GGGGGSTTHHHHHHHHHHHHHTTBSSHHHHHHHHHHHHHHHH.H CS
          HK 124 lelkvkGvDskeaataavaavqkvAqklrvvvvvtGevDvvsdgkk.vyklknGtellgkitasGCllgsvvaaflavkkdkllaaveavllykvAgke 221
                 ++ +  Gv ++e + + ++a+q++ ++++ vvv+ G+  +++  +  ++    G+  +++  + G +l+ ++a+ ++ k +  +aa +++++   A+++
  EHT99151.1 378 EAARLLGVKTSEIESDRLHAAQELVKRYGGVVVLKGAGTIIASESGqMAFADVGNAGMAS-GGMGDVLTGIIASLMGQKLALFDAACAGCVAHGAAADK 475
                 566778*********************************998766516666779999987.899************9988888888***********99 PP

                 HHHHHHTTHHHHHHHHHHHHH-- CS
          HK 222 aaarsegsgsFqvelldalsqlt 244
                  aa   + g   + l d l+q  
  EHT99151.1 476 RAALWGTRGMLASDLFDLLWQFV 498
                 99999999***********9975 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     3e-06     0.013     118     220 ..     367     461 ..     344     467 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-06
                   GG-SEEE-BHHHHHHHHT---SSHH.HHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHC CS
  Phos_pyr_kin 118 platvitPNlpEaeaLlgekiktee.dmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaelak 213
                   ++  +itP   Ea++Llg k ++ e d  +aa++l+k     V++kG  +         ++ ++++ + +     +     G G++l   ia+ + +
    EHT99151.1 367 RQNRIITPHPGEAARLLGVKTSEIEsDRLHAAQELVKRYGGVVVLKGAGT---------IIASESGQMAFADVGNAGMASGGMGDVLTGIIASLMGQ 454
                   4578**************66665444999********99999999**863.........34444444444444444466777777777777777777 PP

                   TSSHHHH CS
  Phos_pyr_kin 214 gesleeA 220
                   +  l +A
    EHT99151.1 455 KLALFDA 461
                   7777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3945.52
//
Query:       EHT99152.1  [L=379]
Description: putative Fe-S electron transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-25   88.1   0.0    7.1e-25   86.7   0.0    1.7  2  DUF1730   Domain of unknown function (DUF1730)
    1.6e-19   70.6   3.9      3e-19   69.7   3.9    1.5  1  Fer4_16   4Fe-4S double cluster binding domain
    2.1e-05   24.6   4.7     0.0074   16.4   1.7    2.3  2  Fer4_10   4Fe-4S dicluster domain
    9.1e-05   22.5   2.2     0.0077   16.4   0.3    2.3  2  Fer4_9    4Fe-4S dicluster domain
    0.00025   21.6   7.1     0.0017   18.9   7.2    2.2  2  Fer4_7    4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.015   15.7   2.3       0.37   11.3   1.4    2.3  2  Fer4_8    4Fe-4S dicluster domain
      0.016   15.0   3.9      0.016   15.0   3.9    2.9  3  Fer4      4Fe-4S binding domain
      0.016   15.3  14.3       0.29   11.3   5.4    2.9  2  Fer4_6    4Fe-4S binding domain
      0.018   15.1   6.6          1    9.5   2.7    2.3  2  Fer4_21   4Fe-4S dicluster domain
       0.07   12.7   0.7       0.16   11.5   0.1    1.9  2  DUF3145   Protein of unknown function (DUF3145)
        2.6    8.8   8.5         37    5.2   0.1    2.7  2  Fer4_4    4Fe-4S binding domain
        4.8    8.3  15.4        2.2    9.4   4.7    2.7  2  Fer4_3    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> DUF1730  Domain of unknown function (DUF1730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5   5.2e+03      54      69 ..       7      24 ..       6      31 .. 0.65
   2 !   86.7   0.0   4.7e-28   7.1e-25       1      76 []      62     140 ..      62     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.5
                HHHHHHHHHTTSST-..- CS
     DUF1730 54 Lkklaerleeevpee..e 69
                L++la+ +++  ++   +
  EHT99152.1  7 LDQLAQHIKQWGRDLgfQ 24
                889999999886554444 PP

  == domain 2  score: 86.7 bits;  conditional E-value: 4.7e-28
                 HH-HHHHSTT--EEEEEEEE-S-----SSS-...B..-EE-GGGSSS-HHHHHHHHHHHHHHHHHTTSST--EEEESSS CS
     DUF1730   1 RadprellpgarsvivvalnYkppeaeeeke...peegkisryAlgrDYHkvlkkrLkklaerleeevpeeearvfvDt 76 
                 Ra+p+ellpg+ +vi+v++nY p++a+ +++   p+ g++sryAlgrDYHkvl++rLkkl e ++++ +e+++r fvD+
  EHT99152.1  62 RARPHELLPGTLRVISVRMNYLPAKAAFASTlknPQLGYVSRYALGRDYHKVLRNRLKKLGEMIQTHCGESQFRPFVDS 140
                 99*******************9888887777778899******************************9999*******8 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   3.9     2e-22     3e-19       1      67 []     192     256 ..     192     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 2e-22
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCPan 67 
                 +Cg+C +C+ +CPt+ai e+  ++++ar+cisy t+e ++++++e++  ++++i+gCd Cq +CP+n
  EHT99152.1 192 QCGRCVACMTICPTGAIVEP--YTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWN 256
                 6*******************..********************************************9 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.7     5e-06    0.0074       5      23 ..     189     207 ..     186     232 .. 0.80
   2 !    8.7   0.1    0.0013       1.9      11      23 ..     245     257 ..     244     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5e-06
     Fer4_10   5 dddtCirCgkCvkaCPadl 23 
                 ++++C rC +C++ CP+ +
  EHT99152.1 189 QEEQCGRCVACMTICPTGA 207
                 5789************944 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
     Fer4_10  11 rCgkCvkaCPadl 23 
                 +C +C+  CP++ 
  EHT99152.1 245 GCDDCQLICPWNR 257
                 7**********33 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   5.2e-06    0.0077      32      51 .]     189     208 ..     160     219 .. 0.84
   2 ?    5.5   0.1     0.013        19       4      17 ..     245     258 ..     243     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.2e-06
      Fer4_9  32 seeaCigCgaCveaCpkgai 51 
                 +ee+C  C aC+ +Cp+gai
  EHT99152.1 189 QEEQCGRCVACMTICPTGAI 208
                 34789999999999999987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
      Fer4_9   4 gCgaCveaCpagvv 17 
                 gC+ C+  Cp + +
  EHT99152.1 245 GCDDCQLICPWNRY 258
                 79999999987665 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   4.2   0.00028      0.41      34      52 .]     189     207 ..     182     207 .. 0.90
   2 !   18.9   7.2   1.1e-06    0.0017       1      51 [.     192     256 ..     192     257 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
      Fer4_7  34 dpekClgCgaCvavCPtga 52 
                 ++e+C  C aC++ CPtga
  EHT99152.1 189 QEEQCGRCVACMTICPTGA 207
                 6789*************98 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.1e-06
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt.ekveidpekCl.............gCgaCvavCPtg 51 
                 +C  C aC+  Cp++ai  ++  +++++  +++i+ e  +             gC+ C+  CP++
  EHT99152.1 192 QCGRCVACMTICPTGAIVEPYTVDARRCiSYLTIELEGAIpeefrplmgnriyGCDDCQLICPWN 256
                 5*****************999888887643334444444444444444444449*********97 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.4   0.00025      0.37       3      19 ..     191     207 ..     189     228 .. 0.80
   2 ?    2.8   0.0      0.11   1.6e+02       7      17 ..     245     255 ..     243     300 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
      Fer4_8   3 ekCieCgaCqsaCpvlr 19 
                 e+C++C aC++ Cp+  
  EHT99152.1 191 EQCGRCVACMTICPTGA 207
                 58***********9654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.11
      Fer4_8   7 eCgaCqsaCpv 17 
                 +C  Cq  Cp 
  EHT99152.1 245 GCDDCQLICPW 255
                 57777777772 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   3.9   1.1e-05     0.016       5      23 ..     190     208 ..     187     209 .. 0.93
   2 ?   -1.4   0.0       1.6   2.4e+03       1       9 [.     212     220 ..     212     221 .. 0.84
   3 ?    4.0   0.5     0.033        49      10      21 ..     245     256 ..     244     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
                 TTTSSS-THHHHHSTTTEE CS
        Fer4   5 eekCigCGaCvevCPvgAI 23 
                 ee C +C aC+ +CP+gAI
  EHT99152.1 190 EEQCGRCVACMTICPTGAI 208
                 799***************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
                 EEEETTTSS CS
        Fer4   1 vvideekCi 9  
                 +++d  +Ci
  EHT99152.1 212 YTVDARRCI 220
                 579999**9 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.033
                 S-THHHHHSTTT CS
        Fer4  10 gCGaCvevCPvg 21 
                 gC  C  +CP +
  EHT99152.1 245 GCDDCQLICPWN 256
                 8*********86 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.4   0.00019      0.29       7      24 .]     191     208 ..     189     208 .. 0.81
   2 ?    8.2   1.6    0.0018       2.8      11      22 ..     245     256 ..     213     259 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
      Fer4_6   7 dkCigCgdCvrvCPegai 24 
                 + C  C +C+++CP+gai
  EHT99152.1 191 EQCGRCVACMTICPTGAI 208
                 667777779********8 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
      Fer4_6  11 gCgdCvrvCPeg 22 
                 gC+dC  +CP +
  EHT99152.1 245 GCDDCQLICPWN 256
                 9*********76 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.7   0.00069         1      37      57 ..     189     208 ..     183     210 .. 0.84
   2 ?    7.0   0.1    0.0044       6.5      35      53 ..     237     255 ..     214     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00069
     Fer4_21  37 vedeCvGCnlCssvCPvedci 57 
                 +e++C  C  C+++CP+ ++i
  EHT99152.1 189 QEEQCGRCVACMTICPT-GAI 208
                 5899************7.666 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0044
     Fer4_21  35 kvvedeCvGCnlCssvCPv 53 
                 +++ ++  GC+ C  +CP 
  EHT99152.1 237 PLMGNRIYGCDDCQLICPW 255
                 56667778**********5 PP

>> DUF3145  Protein of unknown function (DUF3145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.9   5.8e+03      35      53 ..      42      60 ..      39      63 .. 0.74
   2 ?   11.5   0.1   0.00011      0.16      11      40 ..     337     366 ..     333     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.9
     DUF3145 35 paapgslraelsWegevgt 53
                +  + +++ e++W +++g 
  EHT99152.1 42 DWLDKQYHGEMEWMARHGM 60
                5566788899999998875 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
     DUF3145  11 lcpHvewavssvlgarvslkWtaqpaapgs 40 
                 l  H+ewa+++ l++r +l    qpa++  
  EHT99152.1 337 LDEHIEWAITQQLHKRKALAIDVQPAQQKR 366
                 668***********************9865 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.1     0.036        53       4      17 .]     193     206 ..     190     206 .. 0.65
   2 ?    5.2   0.1     0.024        37       6      15 ..     245     254 ..     243     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.036
      Fer4_4   4 CigCgsCvaaCPqg 17 
                 C +C +C+ +CP+g
  EHT99152.1 193 CGRCVACMTICPTG 206
                 3345567777**86 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.024
      Fer4_4   6 gCgsCvaaCP 15 
                 gC+ C  +CP
  EHT99152.1 245 GCDDCQLICP 254
                 8********9 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.7    0.0015       2.2       4      15 .]     193     207 ..     191     207 .. 0.80
   2 ?    6.3   0.3     0.015        22       3      14 ..     245     256 ..     244     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0015
      Fer4_3   4 Cg...aCvevCPvgA 15 
                 Cg   aC+  CP+gA
  EHT99152.1 193 CGrcvACMTICPTGA 207
                 55444*********9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
      Fer4_3   3 gCgaCvevCPvg 14 
                 gC  C   CP++
  EHT99152.1 245 GCDDCQLICPWN 256
                 8*99******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3074.29
//
Query:       EHT99153.1  [L=182]
Description: oligoribonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-37  130.1   0.0    1.3e-37  129.9   0.0    1.0  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0     7e-42   1.3e-37       1     164 [.      10     171 ..      10     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 7e-42
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCC..EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEE CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggen..eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvg 97 
                 ++iDlE+tgld+ e+d+iieia  ++d+++n  ++g+ + +++ +++l+ ++d+ ++++ ++++ +++++s  +   ++k  +++l+ +v+ n+++++g
  EHT99153.1  10 IWIDLEMTGLDP-ERDRIIEIATLVTDADLNilAEGPVMAVHQSDEQLSLMDDWNVRTHTNSGLVARVKASQTDDRAAEKATIEFLKQWVPANTSPICG 107
                 7***********.9************************************************************************************* PP

                 SSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSSTSSHHHHHHHHHHH CS
     RNase_T  98 flraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgraHrAldDaeatakl 164
                 ++  +d+r+l k++p+ +++++++ ld++tlkelar++ ++++   g++++g+ H+AldD+++++++
  EHT99153.1 108 NSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPDILP--GFKKTGS-HQALDDIRESVAE 171
                 ********************************************..5666665.*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1451.59
//
Query:       EHT99154.1  [L=349]
Description: ribosome small subunit-dependent GTPase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-53  181.4   0.0    1.6e-53  181.0   0.0    1.1  1  RsgA_GTPase   RsgA GTPase
    1.7e-06   27.7   0.1    0.00067   19.3   0.0    2.2  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
    1.5e-05   25.1   0.0    3.9e-05   23.7   0.0    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
    5.5e-05   22.7   0.7       0.19   11.3   0.2    2.4  2  FeoB_N        Ferrous iron transport protein B
    0.00017   22.1   0.4     0.0031   18.0   0.0    2.3  2  ABC_tran      ABC transporter
     0.0054   16.8   0.1      0.015   15.4   0.1    1.6  1  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.035   13.9   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
       0.02   14.5   0.1        5.8    6.5   0.0    2.2  2  Ras           Ras family
      0.025   14.6   0.1      0.048   13.7   0.1    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
       0.03   13.9   0.3       0.36   10.3   0.1    2.3  2  GTP_EFTU      Elongation factor Tu GTP binding domain
      0.038   14.4   0.1      0.098   13.0   0.0    1.7  2  AAA_16        AAA ATPase domain
       0.11   11.6   0.0       0.17   10.9   0.0    1.2  1  IIGP          Interferon-inducible GTPase (IIGP)
       0.11   12.8   0.0       0.23   11.8   0.0    1.5  1  AAA_22        AAA domain
        0.2   11.3   0.0        0.3   10.8   0.0    1.2  1  AAA_15        AAA ATPase domain


Domain annotation for each model (and alignments):
>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.0   1.3e-56   1.6e-53       1     167 []      95     275 ..      95     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.0 bits;  conditional E-value: 1.3e-56
                  E---S-EETTTT........EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH..HHHHHHHHHHHTTSEEEE--TTTHT CS
  RsgA_GTPase   1 vleRknelvrpk........vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee..eleelkeelealgyevllvsaktke 88 
                  v+eR+++l+rp+        +aN+dq++iv+++  pelsln++dr+Lv+ e+ +iep++vlnKiDll+++    ++e+++ ++++gy+vl+vs+++k+
   EHT99154.1  95 VHERTSVLTRPDfydgvkpiAANIDQIIIVSAIL-PELSLNIIDRYLVASETLDIEPLLVLNKIDLLDDKArtFVDEQMAIYRKIGYRVLMVSSHEKA 191
                  689*******************************.**********************************998889*********************** PP

                  THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT.T....-----S--------------SEEEEEETTTEEEESS-SSSS--GC CS
  RsgA_GTPase  89 gleelkellkdktsvlvGqSGvGKStLinallp.e....lelktgevseklgrGkhTTtavellelaegglliDtPGfreldle 167
                  gl+el+++l d++s+++GqSGvGKS+L+nall+ +    + + t++vs+ +g G+hTTta++l+++++gg +iD+PG+re++l+
   EHT99154.1 192 GLSELQAALIDRISIFAGQSGVGKSSLLNALLGfDqqedTAILTNDVSDVSGLGQHTTTASRLYHFPDGGDVIDSPGVREFGLW 275
                  *******************************9942222235669*************************************986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0047       6.1     139     158 ..     146     165 ..     120     181 .. 0.79
   2 !   19.3   0.0   5.2e-07   0.00067       3      40 ..     205     242 ..     203     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0047
                 HHTSSEEEEE-HHHHCHC.. CS
        cobW 139 laaadllvlnKtDlldeeal 158
                 l    llvlnK+Dlld++a 
  EHT99154.1 146 LDIEPLLVLNKIDLLDDKAR 165
                 5555699*********9954 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 5.2e-07
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCH CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefgevs 40 
                 ++++G  G GK++Lln+ll   +++++a+++N++++vs
  EHT99154.1 205 SIFAGQSGVGKSSLLNALLGFDQQEDTAILTNDVSDVS 242
                 68899**************9999***********9876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         9   1.1e+04      24      40 ..      52      68 ..      47      77 .. 0.67
   2 !   23.7   0.0     3e-08   3.9e-05       3      57 ..     206     270 ..     204     316 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
                EEESSSTTSSSSEEEEE CS
    MMR_HSR1 24 aivsdkpgtTrdinegr 40
                a v+d +g T   n +r
  EHT99154.1 52 ADVEDSAGITHRCNIRR 68
                56677777776666554 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3e-08
                 EEEESTTSSHHHHHHHHHT.......S..TEEESSSTTSSSSEEEEE.EE..ETTEEEEEEECGGCS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg.......e..kaivsdkpgtTrdinegr.vk..lkgkeielvDtpGli 57 
                 +++G++ vGKS+L+nal+g       +  +  vsd  g  ++++++  +      +   ++D pG+ 
  EHT99154.1 206 IFAGQSGVGKSSLLNALLGfdqqedtAilTNDVSDVSGLGQHTTTASrLYhfP--DGGDVIDSPGVR 270
                 589***************87777654233446666666555554332122212..34689*****52 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   0.00014      0.19     104     155 ..     146     199 ..     117     200 .. 0.81
   2 !    9.6   0.0   0.00048      0.61       5      26 ..     207     228 ..     204     291 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                 TTSSEEEEEETHHHHHHTTEE.E-HH.HHHHHHTS-EEEEBTTTTBTHHHHHHH CS
      FeoB_N 104 lgvpvvlalnmideaekkgie.idlk.kLsekLgvpvvktsakkkegieellka 155
                 l+++ +l+ln+id +++k  + +d++ ++ +k+g  v+ +s+++k g++el++a
  EHT99154.1 146 LDIEPLLVLNKIDLLDDKARTfVDEQmAIYRKIGYRVLMVSSHEKAGLSELQAA 199
                 5678899*******98776551565425789*******************9875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00048
                 EEESTTSSHHHHHHHHHTTSEE CS
      FeoB_N   5 lvGnpnvGkttlfnaltgakqk 26 
                 ++G+  vGk++l+nal g +q+
  EHT99154.1 207 FAGQSGVGKSSLLNALLGFDQQ 228
                 79***************98875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.23   2.9e+02     106     118 ..       3      15 ..       1      17 [. 0.86
   2 !   18.0   0.0   2.5e-06    0.0031      15      45 ..     206     236 ..     201     271 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.23
                 SGGS-HHHHHHHH CS
                 xxxxxxxxxxxxx RF
    ABC_tran 106 pssLSgGqkqrva 118
                 +++LS+Gq++rv+
  EHT99154.1   3 KNKLSKGQQRRVS 15 
                 579********96 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.5e-06
                 EEEESTTSSHHHHHHHHTTSS--SEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGeilld 45 
                  + G++G GKS+Ll++l+g  +++   il +
  EHT99154.1 206 IFAGQSGVGKSSLLNALLGFDQQEDTAILTN 236
                 578*****************99766666433 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.2e-05     0.015       4      38 ..     208     241 ..     205     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                 EEBTTTTHHHHHHHHHTS--S---SSS---S-EEE CS
   Dynamin_N   4 vGsqSsGKSSvlnaLlgedilprgpnptTrrplel 38 
                  G+   GKSS+lnaLlg d    ++ + T  +  +
  EHT99154.1 208 AGQSGVGKSSLLNALLGFD-QQEDTAILTNDVSDV 241
                 588889************9.778888888776655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.7e-05     0.035      24      42 ..     204     222 ..     191     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                 + +++G+sG+GKS+ll A+
  EHT99154.1 204 ISIFAGQSGVGKSSLLNAL 222
                 6799************997 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0045       5.8      71     160 ..     117     204 ..     107     206 .. 0.74
   2 ?    6.1   0.0    0.0059       7.6       3      28 ..     206     229 ..     204     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0045
                 TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-.HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  71 daegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravs.teegeelakelglkfletSAktnenveeafeellrei 160
                 + + i++v +i  + s++ +++++    + +  +++ +Lv nK+Dl +++a +  +e  ++ +++g++ l +S +++ +++e+  +l+++i
  EHT99154.1 117 NIDQIIIVSAILPELSLNIIDRYLVA--SETL-DIEPLLVLNKIDLLDDKARTfVDEQMAIYRKIGYRVLMVSSHEKAGLSELQAALIDRI 204
                 56677888888888888888877643..2223.48899*******998555441455566779999999999*999999999887777665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0059
                 EEEESTTSSHHHHHHHHHHSSCSSSC CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeey 28 
                 ++ G+s+vGK+sll+      F+++ 
  EHT99154.1 206 IFAGQSGVGKSSLLNALLG--FDQQE 229
                 567***********97653..55554 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.8e-05     0.048      56     103 ..     148     203 ..     134     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
  MMR_HSR1_Xtn  56 ipclyvlNKiDlisleeldelare........pnsvviSaekelnldeLkekiwee 103
                   i+ l+vlNKiDl++++    ++++         +++++S++++ +l eL+ ++ ++
    EHT99154.1 148 IEPLLVLNKIDLLDDKARTFVDEQmaiyrkigYRVLMVSSHEKAGLSELQAALIDR 203
                   56799*******998888777776677777777999*************9887665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00028      0.36      92     185 ..     116     197 ..     105     205 .. 0.59
   2 ?    1.1   0.0       0.2   2.5e+02       8      30 ..     207     229 ..     202     274 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
                 HT-SEEEEEEETTTBSTHHHH.HHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU  92 rvlDgavlvvdaveGvepqte.evlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktll 185
                 + +D  ++v ++      +   + l    ++++++ +++NK+D l+++ +  v+e    +       +k+g      + v+++S+ ++ g+++l 
  EHT99154.1 116 ANIDQIIIVSAILPELSLNIIdRYLVASETLDIEPLLVLNKIDLLDDKARTFVDEQMAIY-------RKIG------YRVLMVSSHEKAGLSELQ 197
                 55555555555555544444304555667899*************888888777765333.......2222......235555555555555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
                 EEESTTSSHHHHHHHHHHHTTSS CS
    GTP_EFTU   8 iighvDhGKtTLtdrLlyktgai 30 
                 ++g    GK++L+ +Ll   ++ 
  EHT99154.1 207 FAGQSGVGKSSLLNALLGFDQQE 229
                 56677778888888888433332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.7     6e+03     125     154 ..     138     167 ..     108     177 .. 0.70
   2 ?   13.0   0.0   7.6e-05     0.098      26      46 ..     204     224 ..     193     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.7
      AAA_16 125 rllallsrderplvlvlDdlqwadeaslql 154
                 r l+ +++ +   +lvl  ++ +d+  +++
  EHT99154.1 138 RYLVASETLDIEPLLVLNKIDLLDDKARTF 167
                 444444444445678888888888877765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.6e-05
      AAA_16  26 lvllsGesGvGKsslvrellr 46 
                 + ++ G+sGvGKssl+++ll 
  EHT99154.1 204 ISIFAGQSGVGKSSLLNALLG 224
                 56789*************984 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.17      36      68 ..     204     235 ..     182     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                 EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S CS
        IIGP  36 lkiavtGdsGnGkssFinaLRliGheeedsApt 68 
                 ++i+  G+sG Gkss +naL +  ++e+ +  t
  EHT99154.1 204 ISIF-AGQSGVGKSSLLNALLGFDQQEDTAILT 235
                 4444.6**************9999999887655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.23       7      36 ..     204     233 ..     202     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakae 36 
                 i +  G+sG+GK+ ll+ ll  +++e  a 
  EHT99154.1 204 ISIFAGQSGVGKSSLLNALLGFDQQEDTAI 233
                 66788***************9987765554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00023       0.3      16      50 ..     195     229 ..     192     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
      AAA_15  16 dveidlseeltvliGkNnsGKSsilealdlFlnnk 50 
                 + +  l + ++++ G  ++GKSs+l+al  F +++
  EHT99154.1 195 ELQAALIDRISIFAGQSGVGKSSLLNALLGFDQQE 229
                 555667777*******************8887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3020.80
//
Query:       EHT99155.1  [L=298]
Description: phosphatidylserine decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-59  199.2   0.0      6e-59  199.0   0.0    1.1  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
  ------ inclusion threshold ------
       0.23   11.9   0.5        6.6    7.2   0.1    2.4  2  DNA_binding_2   DNA-binding domain


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.0   6.7e-63     6e-59       1     198 [.      63     283 ..      63     285 .. 0.97

  Alignments for each domain:
  == domain 1  score: 199.0 bits;  conditional E-value: 6.7e-63
  PS_Dcarbxylase   1 lneffvrklkdgaRpidddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkvee 95 
                     +n+ffvr lkd+aRp+d+d + i  PaDg i+q g+ie ++++q+Kg+ y++++Ll ++++  a  f++g f+++yL+p+dyHr+h+P++g ++e
      EHT99155.1  63 FNDFFVRPLKDEARPVDPDASLIALPADGAISQLGHIEGDQIFQAKGHYYTIDALLAGNEQL-AALFREGEFITTYLAPRDYHRVHMPCNGILRE 156
                     8*********************************************************9885.79****************************** PP

  PS_Dcarbxylase  96 rrhipGellsvnpsalkelrglftlneRvvlview.kGkvavvpvGatnvgsivln......................vlkgdelkkGeelGyFq 167
                     + ++pG+l+svnp  ++++++lf++neRv++++e+  G ++ + vGat+vgsi++                         +   l kG+e+G F+
      EHT99155.1 157 MIYVPGDLYSVNPLTARNIPNLFSRNERVICYFETdMGPMVQILVGATIVGSIETVwagtvtppregiikrwhypaadHDGAVVLLKGQEMGRFK 251
                     **********************************548****************************************9889999*********** PP

  PS_Dcarbxylase 168 fGStvvlvfeag.kfieslvekgqkvkmGekl 198
                     +GStv+ +f +g     +++e++ kv+mG+ +
      EHT99155.1 252 LGSTVINLFAPGrVRLAESLEAESKVRMGQPM 283
                     ************9888999**********976 PP

>> DNA_binding_2  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.024   2.2e+02       5      27 ..       4      28 ..       2      32 .. 0.73
   2 ?    7.2   0.1   0.00074       6.6      16      33 ..      43      59 ..      42      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.024
  DNA_binding_2  5 rFrL..SdmiPnaWFYKLkdmgksR 27
                   rF+L   +++P  W+  L   g sR
     EHT99155.1  4 RFKLglNHILPKKWLTELAGWGASR 28
                   7775227*******97777666666 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00074
  DNA_binding_2 16 WFYKLkdmgksRkhskas 33
                   WFYK  dm+ +Rk+ +as
     EHT99155.1 43 WFYKV-DMTEARKPDTAS 59
                   ****8.9*****999664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2439.89
//
Query:       EHT99156.1  [L=1112]
Description: putative mechanosensitive channel [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.1e-113  377.7  19.0   2.4e-112  375.2  19.0    2.4  1  MscS_TM     Mechanosensitive ion channel inner membrane domai
    1.6e-57  194.8  55.3    1.6e-57  194.8  55.3    3.3  4  MscS_porin  Mechanosensitive ion channel porin domain
    1.9e-49  168.0   0.1    5.3e-49  166.6   0.1    1.9  1  MS_channel  Mechanosensitive ion channel


Domain annotation for each model (and alignments):
>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.2  19.0    4e-116  2.4e-112       3     339 .]     484     819 ..     482     819 .. 0.98

  Alignments for each domain:
  == domain 1  score: 375.2 bits;  conditional E-value: 4e-116
     MscS_TM   3 lillllllallllllrrrlkrrleklaervgkvkqDsflhTlrallltlllalPlplllaaiglllqeaaqaepfaaalgaallaaalvllvfellral 101
                 +++++ll++++l+  rr+++++le+ a++vgkv+qD+f++T+r++++++l+alPlp+l+a +g+ lq+a +++p+a+a+g++++a+ ++l++f++ +++
  EHT99156.1 484 ILGAVLLVGFSLS-TRRHFNAFLERSASKVGKVTQDRFRLTIRTVFWSILVALPLPVLWATLGYGLQNA-WPYPVAVAIGDGITATLPLLWIFMVSAQF 580
                 5677888889988.9******************************************************.***************************** PP

     MscS_TM 102 lrpdGlaerHFgwpkesvrrlrralkrlilvllplllvlilaealsdalardvlGrlaflllllllavflarllrpalglyankkeeeknslrlrrlly 200
                 +rp+Gl+++HF+wp+ +v+r++r++  +i +++pl+++li++++l+d+l++ +lGrl+f+l++ +l++++ +l+r++++ly +k+++++n  +++rll+
  EHT99156.1 581 ARPNGLFIVHFRWPQVRVARAMRYYSLSIGLIVPLIMLLITFDNLDDRLFSATLGRLCFILICGALSIVTVSLKRAGIPLYLDKEGSGEN--MINRLLW 677
                 *************************************************************************************99999..******* PP

     MscS_TM 201 lllvlaPlalavlaalGYyyTalqLlerlilslllllllllvyalalRwllvarRRlayerakekRaaalaqrakeeeeeeekkesae...veepeldl 296
                 +l++++Pl++a++++ GY+ Ta+ Ll+rl++s++++++ll++y++++Rw+l++rRRl ++ra+++Ra +la+ra++eee++++ ++++   +eep++dl
  EHT99156.1 678 NLMIAIPLVAALASMTGYLETAQALLARLETSVAIWFFLLVIYHIIRRWMLIQRRRLGFDRARQRRADMLANRARNEEEKDQAAQNTDvieIEEPVIDL 776
                 ********************************************************************************9998888899********* PP

     MscS_TM 297 eaisaQslrLlrlllllallvglylvWsdllpalsfLdnitLW 339
                 +aisaQslrL+r++l+l++lv+++++Ws++++a++fL+ni LW
  EHT99156.1 777 DAISAQSLRLVRSILTLIALVSVIVLWSEIHSAFGFLENIRLW 819
                 ******************************************* PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8  55.3   2.7e-61   1.6e-57       1     235 [.      33     261 ..      33     264 .. 0.99
   2 ?   -1.6   8.8      0.27   1.6e+03     165     206 ..     270     311 ..     268     315 .. 0.89
   3 ?   -4.9   5.2       2.8   1.7e+04     137     166 ..     367     400 ..     336     431 .. 0.42
   4 ?   -5.3   1.3         3   1.8e+04     217     232 ..     748     763 ..     740     768 .. 0.42

  Alignments for each domain:
  == domain 1  score: 194.8 bits;  conditional E-value: 2.7e-61
  MscS_porin   1 qLdelekakldeaeqkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqe 99 
                 qL+e+++ak +  +q++++q+Le+al+ L ++d+  ++a+++q++idd+P++ rel+q++++l    ++++k+  +++s++eLeq++lq ssql e+ +
  EHT99156.1  33 QLEEVKSAK-NATSQTDQIQSLEAALAALSERDDAVERAQQYQQVIDDFPRLARELRQQIASL----NDSVKTVRSTMSSAELEQEILQISSQLIEEGR 126
                 89*******.*****************************************************....******************************** PP

  MscS_porin 100 qlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsnnnrqeLlklqrdllklriqqleq 198
                 q +q++++++e+++++++++qq+tear++l+e ++rL+s   + ++  qaq +a qae aa +a+++e e+++ls+nnrqeL+++++++++ +++ql++
  EHT99156.1 127 QAQQEQDRAREISDSLSQLPQQQTEARRALTESERRLQSAGSPATPAGQAQLMARQAENAANKARVDEFELAQLSANNRQELARMRAEVHQRKVTQLDN 225
                 *************************************99989999****************************************************** PP

  MscS_porin 199 elqaLqellnekRlaeaekavaqteqlaeeaagknPl 235
                 +lqaL+++lne+R++eae+a+a+teqlae++ g++P 
  EHT99156.1 226 YLQALRNQLNEQRQREAETALARTEQLAENS-GDLPP 261
                 ******************************9.99996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.27
  MscS_porin 165 ieeleqellsnnnrqeLlklqrdllklriqqleqelqaLqel 206
                 ++el  +l  + +r +L  +q+ l++ +i q  q l++L+e+
  EHT99156.1 270 NRELSGALNQQAQRMDLVASQQRLATNQIIQVRQALSTLREQ 311
                 567777899999***************************997 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 2.8
  MscS_porin 137 nstaaage....alsqaqrtalqaelaaleaqie 166
                 ++ +++g+    +    + ++l++++++l++ i+
  EHT99156.1 367 KAHQPDGQpftsEQKRILDAQLKTQRELLNSLIS 400
                 3334444422112222222344444444444444 PP

  == domain 4  score: -5.3 bits;  conditional E-value: 3
  MscS_porin 217 kavaqteqlaeeaagk 232
                 +  a++e+++ +aa++
  EHT99156.1 748 ANRARNEEEKDQAAQN 763
                 3333444444444333 PP

>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.1   8.9e-53   5.3e-49       2     206 .]     880    1079 ..     879    1079 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 8.9e-53
                  .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEH CS
  MS_channel    2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPn 98  
                  +++k++++++g l+ +sl+g+++s+l +++  lg++lg++l+++++n+++G+i+lfekp++iGD+v+i d++G+++ i++r+t+i+++d++++++Pn
  EHT99156.1  880 TLTKYVLLLIGGLLGFSLIGIEWSKLQWLVTGLGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSITRINTRATTITDWDRKEIIVPN 976 
                  689********************************************************************************************** PP

                  HHHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHH CS
  MS_channel   99 sslvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlri 195 
                  ++++t++++N+s ++  +r++++i  + + +    e+v+  lk+a+++ ++vl+ ++++v+l ++++    fe+rv + +  +++++ +++e+++ i
  EHT99156.1  977 KAFITEQFVNWSLSDSVTRVVLTIPAPATVS---SEEVTTLLKQAAERCSYVLDTPPPEVFLVDLQQGIQLFELRVHAAE--MGHRMPLRHELHQLI 1068
                  *******************************...**********************************************..*************** PP

                  HHHHHHHT--- CS
  MS_channel  196 kkileeegiei 206 
                     + e+gie+
  EHT99156.1 1069 LHGFAEHGIEM 1079
                  *********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1881  (0.104914); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.46
# Mc/sec: 7331.47
//
Query:       EHT99157.1  [L=312]
Description: NAD(P)-binding malate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-51  174.9   0.0    1.8e-51  174.4   0.0    1.2  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    4.6e-46  156.4   0.9    6.5e-46  155.9   0.9    1.2  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
  ------ inclusion threshold ------
      0.099   13.1   1.0       0.24   11.9   0.1    2.1  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
       0.26   11.1   2.8       0.91    9.4   2.8    1.9  1  NAD_binding_10  NAD(P)H-binding


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   4.1e-55   1.8e-51       1     167 []     147     310 ..     147     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 4.1e-55
                 THHHHHHHHHHHHHHHTS-GGGEE--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHTTHTE CS
     Ldh_1_C   1 TtLDivRaktflaekagvtprsvkvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallrdtke 99 
                 TtLDi+Ra+tf+ae +g++p +v+v+V+GgHsgvti pllsqv   +++se+++++l++r+qn+g+evv+ak+G+gsatlsm++A+a+f  +l+r++++
  EHT99157.1 147 TTLDIIRANTFVAELKGKQPGEVEVPVVGGHSGVTILPLLSQVPG-VSFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALNG 244
                 9********************************************.9**************************************************** PP

                 EEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCCH CS
     Ldh_1_C 100 ilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekglefv 167
                 +  a v+++++v+ + +++++fs+P++lgknGv +   i+ l++fe+++le + ++Lkk+i +g++fv
  EHT99157.1 245 E--ANVVECAYVEGEGKYARFFSQPLLLGKNGVAERKPIGALSPFEQQALEGMLETLKKDIAQGEAFV 310
                 *..*************************************************************9986 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.9   1.5e-49   6.5e-46       1     141 []       1     145 [.       1     145 [. 0.99

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 1.5e-49
                 EEEEEETTTSHHHHHHHHHHHHT.TSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllank.kladelaLlDiakekleGvaldlshistflsvkvkvsekeeealkdadvvvitagvprkpGetRddLlkvNakIv 98 
                 +kvav+GaaGgiGq+lalll+++ + ++el L+Dia+ +++Gva+dlshi t ++v++ ++e+ + alk+advv+i agv rkpG++R+dL++vNa+Iv
  EHT99157.1   1 MKVAVLGAAGGIGQALALLLKTQlPAGSELSLYDIAP-VTPGVAVDLSHIPTAVKVQGFSGEDAKPALKGADVVLISAGVARKPGMDRADLFNVNAGIV 98 
                 69**********************************5.9************************************************************ PP

                 HHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  99 keiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 ++++e++a  ap+a++ v++NPv+    i++evlkk++ ++k+r++g
  EHT99157.1  99 SNLIEQVATTAPKALIGVITNPVNttvaIAAEVLKKHGVYDKNRLFG 145
                 *********************************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.3e-05      0.24       1      74 [.       2      77 ..       2      82 .. 0.61
   2 ?   -1.1   0.1      0.57   2.5e+03       2      26 ..     171     193 ..     170     229 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.3e-05
                    EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTT.TTTSBHHHHSG.GGTTTECEBEEEGGGGGCTT-SEEEE-S CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee.hpevelvvllsssr.saGkklaeavk.aleegkdlkvedvdeeelkevdivflal 74
                    kva++Ga G +Gq+l+ lL++  p  +++ l+  +    G +++  +  +  +++ ++ ed  + +lk++d+v+ ++
      EHT99157.1  2 KVAVLGAAGGIGQALALLLKTqLPAGSELSLYDIAPvTPGVAVDLSHIpTAVKVQGFSGED-AKPALKGADVVLISA 77
                    7*******************95555566666666664445444444331222222222222.444556666666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.57
                     EEEETTTSHHHHHHHHHHHCTSSEE CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLeehpeve 26 
                     v +vG  G  G  +l lL++ p v+
      EHT99157.1 171 VPVVG--GHSGVTILPLLSQVPGVS 193
                     55777..888888888888855442 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.8    0.0002      0.91      39      98 ..      48     118 ..       7     143 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
                     TTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC....HHHH.........HHHHHHHHHHCT--EEEEEEE CS
  NAD_binding_10  39 eglevvegdvtdvedlaealkgadaVvsalggggk....deeg.........aknivdaakeagvkRfvlvsa 98 
                        ++v+++  + ed + alkgad+V++++g  +k    +  +         + n+++ + ++  k ++ v +
      EHT99157.1  48 HIPTAVKVQGFSGEDAKPALKGADVVLISAGVARKpgmdR--AdlfnvnagiVSNLIEQVATTAPKALIGVIT 118
                     4567888888999*************77776555556541..2345556667888888888877777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2281.47
//
Query:       EHT99158.1  [L=156]
Description: DNA-binding transcriptional regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-25   87.4   0.0    5.7e-25   86.9   0.0    1.3  1  Arg_repressor    Arginine repressor, DNA binding domain
    6.9e-23   80.3   0.2    1.1e-22   79.7   0.2    1.3  1  Arg_repressor_C  Arginine repressor, C-terminal domain
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.077   13.0   0.0    1.9  1  DUF4911          Domain of unknown function (DUF4911)


Domain annotation for each model (and alignments):
>> Arg_repressor  Arginine repressor, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   9.6e-29   5.7e-25       2      69 ..       6      74 ..       5      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 9.6e-29
                   SHHHHHHHHHHHHHHS---SHHHHHHHHHTTT--.--HHHHHHHHHHHT-EEEETTSTSEEEE-B-SS- CS
  Arg_repressor  2 kkeerqklikkiikeekissQkelvelLkeeGid.vtQatvSRdLkelglvkvraengeyvYvlpaets 69
                   k++++ k++k+++keek+ssQ+e+v++L+e+G++ ++Q++vSR+L+++g+v++r++++e+vY+lpae +
     EHT99158.1  6 KQDDLIKAFKALLKEEKFSSQGEIVQALQEDGFEnINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELG 74
                   5788999**************************99*******************************975 PP

>> Arg_repressor_C  Arginine repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.2   1.8e-26   1.1e-22       1      66 [.      82     148 ..      82     149 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 1.8e-26
                      HHHH-SEEEEETTEEEEE-STTHHHHHHHHHHH-...TTEEEEEE-SSEEEEEE-TTS-HHHHHHHH CS
  Arg_repressor_C   1 lrelvvsidsaenlvvikTlpGaAqavAaaiDslel.peilGtiAGdDTilvilrseedaeelaekl 66 
                      l++lv++id+++ lvvi+T+pGaAq++A+++Dsl+  ++ilGtiAGdDTi++++  + ++ +l + +
       EHT99158.1  82 LKNLVLDIDYNDALVVIHTSPGAAQLIARLLDSLGKsEGILGTIAGDDTIFITPARAFTVRQLHDAI 148
                      6899*****************************9888******************999999988765 PP

>> DUF4911  Domain of unknown function (DUF4911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.077      27      55 ..      89     117 ..      73     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
     DUF4911  27 vdkkkGlvrirttpdtkeellelLesLkk 55 
                 +d+ ++lv+i+t+p+ ++ + +lL+sL+k
  EHT99158.1  89 IDYNDALVVIHTSPGAAQLIARLLDSLGK 117
                 79*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1230.98
//
Query:       EHT99159.1  [L=87]
Description: uncharacterized DUF1471 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-22   79.5   0.4      2e-22   78.9   0.4    1.3  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
       0.27   11.6   5.1       0.42   10.9   5.1    1.3  1  Htr2      Htr2 transmembrane domain


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.4   2.2e-26     2e-22       1      56 []      34      87 .]      34      87 .] 0.99

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 2.2e-26
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                lq++gt+svsgv+g+psd++++ls+kAd+ GAk++r+++a +  +gn+hatAelYK
  EHT99159.1 34 LQSVGTVSVSGVAGAPSDIRQQLSEKADQHGAKAFRVIEAYN--DGNYHATAELYK 87
                89****************************************..***********9 PP

>> Htr2  Htr2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.1   4.6e-05      0.42       3      44 ..       7      47 ..       5      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.6e-05
        Htr2  3 iFalviavtvaFGgaaYlevtaalasGDaaavgeaavsaiLG 44
                i al i  t+ FG+ a   v+aa a+ +   vg + vs++ G
  EHT99159.1  7 IAALSILSTLSFGASAAEYVSAAGAQ-NLQSVGTVSVSGVAG 47
                67999999*****************9.999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 708.61
//
Query:       EHT99160.1  [L=90]
Description: hypothetical protein CKS_0774 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-15   55.6   0.0    5.8e-15   55.0   0.0    1.3  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
      0.049   13.8   1.3      0.049   13.8   1.3    1.8  2  DUF4148   Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   6.5e-19   5.8e-15       6      56 .]      42      90 .]      36      90 .] 0.96

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 6.5e-19
                EEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  6 tisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                ti+vsg  g ++++++ ls+kAd++GA +Yr+++++   ++++h+tAelYK
  EHT99160.1 42 TITVSGIDGDQTNVRQVLSQKADAQGAGHYRVIENNR--DDTFHVTAELYK 90
                9**********************************99..***********9 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.3   5.4e-06     0.049       1      32 [.       1      30 [.       1      33 [. 0.81
   2 ?   -1.3   0.1      0.29   2.6e+03      32      45 ..      57      71 ..      56      80 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-06
     DUF4148  1 Mkstliaaalaaavaaaaala..ahskspkTRAq 32
                Mk+tl++aal +    a+ l+  ah++sp+T +q
  EHT99160.1  1 MKTTLTFAALSL----ASLLSfgAHAASPVTNQQ 30
                9*9999999999....555555579******777 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.29
     DUF4148 32 qVraELaqaeaaG.y 45
                qV  + a+a+ aG y
  EHT99160.1 57 QVLSQKADAQGAGhY 71
                677777788888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 837.95
//
Query:       EHT99161.1  [L=87]
Description: hypothetical protein CKS_0775 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-21   74.0   0.5    1.1e-20   73.4   0.5    1.3  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.5   5.9e-25   1.1e-20       1      56 []      34      87 .]      34      87 .] 0.99

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 5.9e-25
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                lqp gt+s+sgv+gsp d +++ls+kAde+GA++Y I++a++  g+ +h tA+lYK
  EHT99161.1 34 LQPAGTVSISGVAGSPIDYRAQLSQKADEQGASAYKIIEANT--GDSYHLTAQLYK 87
                8*****************************************..***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 700.61
//
Query:       EHT99162.1  [L=69]
Description: hypothetical protein CKS_0776 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.7   0.8        9.1    6.8   0.3    2.0  2  RecX      RecX family


Domain annotation for each model (and alignments):
>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3   0.00051       9.1      47      61 ..       2      16 ..       1      21 [. 0.89
   2 ?    4.2   0.0    0.0032        57      41      67 ..      32      58 ..      25      68 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00051
                HHHHHHHTTT--HHH CS
        RecX 47 rikqeLkqkGiseel 61
                 i+q+L qkGi++ +
  EHT99162.1  2 TIAQQLEQKGIEKGI 16
                699********9976 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0032
                ----HHHHHHHHHTTT--HHHHHHHHT CS
        RecX 41 rgyGprrikqeLkqkGiseelieqale 67
                ++  + +i++ + q G+ + +++++++
  EHT99162.1 32 ERAAALKIARTMLQNGLHPRVVAEMTA 58
                455666777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 579.14
//
Query:       EHT99163.1  [L=31]
Description: hypothetical protein CKS_0777 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0053   16.4   0.1     0.0053   16.4   0.1    1.0  1  Transposase_31  Putative transposase, YhgA-like


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     3e-07    0.0053     151     175 ..       1      25 [.       1      31 [] 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3e-07
  Transposase_31 151 vDltkvpddeilekrrlallllvqk 175
                     +D+t++pd++i+ +r++a+l+l+q 
      EHT99163.1   1 MDVTVIPDEDIIGHRSMAALTLLQS 25 
                     6******************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        85  (0.00474092); expected 358.6 (0.02)
Passed bias filter:                       77  (0.00429472); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 260.01
//
Query:       EHT99164.1  [L=185]
Description: p-hydroxybenzoic acid efflux system component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-48  165.9  19.2    1.9e-48  165.5  19.2    1.0  1  FUSC      Fusaric acid resistance protein family
    3.1e-11   43.5  16.7    4.4e-11   43.0  16.7    1.2  1  FUSC_2    Fusaric acid resistance protein-like
     0.0068   15.3   9.6     0.0086   14.9   9.6    1.1  1  ALMT      Aluminium activated malate transporter
  ------ inclusion threshold ------
        3.6    7.2  23.5       0.44   10.2   0.7    2.3  2  DUF4203   Domain of unknown function (DUF4203)


Domain annotation for each model (and alignments):
>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5  19.2   4.3e-52   1.9e-48       2     165 ..       5     179 ..       5     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 4.3e-52
        FUSC   2 wlFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPls.........GavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclal 91 
                 ++F +K+++A + AL+i+++l+L+ P+wA++T+ iV+ +++         Ga++ ++l R++GTl+G++aa++++ ++v ap+++ll++++W g+c++l
  EHT99164.1   5 LRFPIKLTFALVAALMIGFHLNLETPRWAVMTAGIVAGGTAfaaggdpysGALRYRGLLRIIGTLIGCVAALVIMIATVRAPVVMLLLCCIWAGFCVWL 103
                 5799*********************************9999999999999************************************************* PP

        FUSC  92 slldrnfrsYafvLAGYTaalialpavadPet..vFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlral 165
                 s+l +  +sYa  LAGYTa +i+++a a      v ++Av R+seI+lGI+Ca+l +++++Prs+++ ++a   a+
  EHT99164.1 104 SSLIKVENSYALGLAGYTALIIVVTANASGGLtlVPQYAVERCSEIILGILCAILADMIFSPRSIKKVIDANCMAT 179
                 **************************995554469******************************99988876665 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0  16.7   9.9e-15   4.4e-11       2     126 ..      18     158 ..      16     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 9.9e-15
      FUSC_2   2 avliaellglwrgeWalitaaivl.........sptlgasltravqRilGtvlGavlallll.yllpgn.lalallvfllvfli...affl.krnyala 85 
                 a++i++ l+l+ + Wa++ta iv           p++ga   r++ Ri+Gt++G+v+al++  + + ++ + l+l++++++f+    ++++  ++yal+
  EHT99164.1  18 ALMIGFHLNLETPRWAVMTAGIVAggtafaaggDPYSGALRYRGLLRIIGTLIGCVAALVIMiATVRAPvVMLLLCCIWAGFCVwlsSLIKvENSYALG 116
                 6699********************9999999999**************************994666667445555666667776665555535889*** PP

      FUSC_2  86 fifltllalllyslaa.gsgnpieialhRlldvliGiliall 126
                  + +t+l++++++ a  g +  ++ a +R+ ++++Gil+a+l
  EHT99164.1 117 LAGYTALIIVVTANASgGLTLVPQYAVERCSEIILGILCAIL 158
                 *****99999999877778888889***************98 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   9.6   1.9e-06    0.0086      57     171 ..      55     165 ..      11     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-06
        ALMT  57 GATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatflrliPaikarYdYgvlvflLTFclvvvsgyrtdev...ielAvkRf 152
                 GA   +Gl R ++Tli G++a +v  +a+        +++ ++   +++++ ++ li   k +  Y++     T  ++vv  + ++ +    ++Av+R 
  EHT99164.1  55 GALRYRGLLRIIGTLI-GCVAALVIMIATVRAP---VVMLLLCCIWAGFCVWLSSLI---KVENSYALGLAGYTALIIVVTANASGGLtlvPQYAVERC 146
                 566679*********9.6777777788887776...344444444567777666664...45568*******************998743359****** PP

        ALMT 153 ltiaiGaliclivsifvfP 171
                 + i++G+l++++  +++ P
  EHT99164.1 147 SEIILGILCAILADMIFSP 165
                 ************9999987 PP

>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   9.7e-05      0.44     111     157 ..      12      57 ..       3      66 .. 0.85
   2 ?    0.8  16.9     0.074   3.3e+02      58     149 ..      65     159 ..      59     181 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.7e-05
     DUF4203 111 iflvivvlgllgavlslklqklllivatsvvGaaavvlgiDyfvgag 157
                  f ++v+  ++g+ l l  +++++++a  v G++a+ +g D ++ga+
  EHT99164.1  12 TF-ALVAALMIGFHLNLETPRWAVMTAGIVAGGTAFAAGGDPYSGAL 57 
                 34.5788888899999999**********************999985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.074
     DUF4203  58 vaalvvGllgGll...allfwelglfllga.lgGlllallilsllegglitslpskaiflvivvlgllgavlslklqklllivatsvvGaaavvlg 149
                 ++  ++G++ +l+   a + +++ ++ll+  ++G+++ l  l+ +e+ +   l++++++ +ivv + + + l+l++q ++   +  ++G  +++l+
  EHT99164.1  65 IIGTLIGCVAALVimiATVRAPVVMLLLCCiWAGFCVWLSSLIKVENSYALGLAGYTAL-IIVVTANASGGLTLVPQYAVERCSEIILGILCAILA 159
                 44455555555555555666777777777668888765555554555555555554444.788888888888888888887777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1465.63
//
Query:       EHT99165.1  [L=310]
Description: p-hydroxybenzoic acid efflux pump subunit AaeA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-20   70.4   0.7    9.1e-16   57.4   0.6    2.5  2  Biotin_lipoyl_2  Biotin-lipoyl like
    1.5e-15   57.0   1.6    3.3e-15   55.9   0.6    2.0  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    4.9e-12   46.5   0.3    3.1e-08   34.3   0.0    3.1  2  HlyD_3           HlyD family secretion protein
    2.2e-06   27.4   0.0    3.9e-06   26.7   0.0    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
       0.02   14.7   0.1        6.4    6.7   0.1    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
       0.31   11.6   2.5       0.47   11.0   2.5    1.2  1  APG6_N           Apg6 coiled-coil region
        2.4    7.6   5.5        6.7    6.2   5.5    1.7  1  Flp1_like        Putative Flagellin, Flp1-like, domain


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.6   3.6e-19   9.1e-16       2      49 ..      47      94 ..      46      95 .. 0.97
   2 !   10.5   0.0   0.00016      0.41       3      27 ..     155     179 ..     153     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 3.6e-19
  Biotin_lipoyl_2  2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49
                     vv I+++v G+++ + V+d+q Vk+Gd+L++ D +++q+al+ a+a++
       EHT99165.1 47 VVAISPDVTGLITDVPVHDNQLVKKGDTLFVVDRPRYQKALDEAQADV 94
                     89********************************************86 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00016
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaG 27 
                      ++I+ap +G V+ lnV +G  +  G
       EHT99165.1 155 TTIKAPSDGWVTNLNVYQGEFITRG 179
                      79*****************999888 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.6   1.3e-18   3.3e-15      18     192 ..      46     237 ..      44     241 .. 0.80
   2 ?   -1.8   0.0      0.58   1.5e+03     153     178 ..     249     276 ..     245     284 .. 0.69

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.3e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX..XXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaa....qe..eyllalkakkklkkke.........lleaarerLrllgvseeqiaelek 101
                 +++ +s+ v+G ++++ v+   + VkkG++L+ ++ p   +a    q+  ey +al ++k+ ++ +           ea ++  + l+ +e+q+a+  +
  EHT99165.1  46 DVVAISPDVTGLITDVPVH-DNQLVKKGDTLFVVDRPRYQKAldeaQAdvEYYQALVNEKRREAGRrnqlgtsamSREAIEQSNNDLQTTEHQLAKSVA 143
                 57899**************.9*************88866543111132227888877666665444778998988555555555667777888888888 PP

                 XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 102 tgkvq....ktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpet 192
                 t++      +++t+kap +G Vt++nv +G++++ g++ + + +  + +v a + e++l+ v++g ++e+t     + t++G+vd i+  v +++
  EHT99165.1 144 TRDLAkidlERTTIKAPSDGWVTNLNVYQGEFITRGSVAVALVQQHSFYVLAYLEETKLHGVRPGFRAEITP-LGSNITLRGTVDSIAAGVTNSS 237
                 87775222369***********************************************************85.5678899*****9998877665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.58
                 XXXXXXXXXXXXX..XXXXXXXXXXXXX CS
    HlyD_D23 153 eqqlalvkvgqkv..evtvealpgktfe 178
                 +++l++v+  q+v  ++++++ pg++f 
  EHT99165.1 249 QSNLEWVRLAQRVpvRIRLDQQPGNQFP 276
                 5678888888865115667777887775 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       3.5       6      33 ..      54      81 ..      49     107 .. 0.77
   2 !   34.3   0.0   1.2e-11   3.1e-08       1      86 [.     156     239 ..     156     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
      HlyD_3  6 vdGvvvelnveegevvqagdelleiipp 33
                v+G +++++v  ++ v +gd+l+ +  p
  EHT99165.1 54 VTGLITDVPVHDNQLVKKGDTLFVVDRP 81
                89*********************99875 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktga 86 
                 t++Ap dG v+ lnv +ge++++g + + ++ + ++ v a++ ++ l  ++ +g +++++   gs+ tl+g++++i++ v+++++ 
  EHT99165.1 156 TIKAPSDGWVTNLNVYQGEFITRGSVAVALVQQHSFYVLAYLEETKLHGVR-PGFRAEITPL-GSNITLRGTVDSIAAGVTNSSSS 239
                 79************************999999******************7.*******998.999************99864442 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.5e-09   3.9e-06       2      77 ..      23     284 ..      22     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.5e-09
                 SEEEEEEEEEE........................................................................................ CS
                 xxxxxxxxxxx........................................................................................ RF
        HlyD   2 lavfvawaala........................................................................................ 12 
                 +++f aw++ +                                                                                        
  EHT99165.1  23 IIIFRAWVFYTespwtrdarfaadvvaispdvtglitdvpvhdnqlvkkgdtlfvvdrpryqkaldeaqadveyyqalvnekrreagrrnqlgtsamsr 121
                 678889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 .............................................................................EEEEEEEECEEEEEEEGCGEEE CS
                 .............................................................................xxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .............................................................................etdldqvrvgqpvevrfdAfpq 34 
                                                                                              et+l +vr+g  +e++  + + 
  EHT99165.1 122 eaieqsnndlqttehqlaksvatrdlakidlerttikapsdgwvtnlnvyqgefitrgsvavalvqqhsfyvlayleETKLHGVRPGFRAEITPLGSNI 220
                 999999999999999999999999999999999999999999999999999999999999999999********************************* PP

                 CTTTSEEEEEEECTSB.......................EEEEEEEEEEEETTEEEESSSS-TTEE CS
                 xxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  35 tktgkftgvVvgispd.......................rvpvrvvvekaqgpyyplriglkagal 77 
                 t++g++ +  +g+++                        rvpvr+ ++++ g+++p  +g +a++ 
  EHT99165.1 221 TLRGTVDSIAAGVTNSsssvdskgmatvqsnlewvrlaqRVPVRIRLDQQPGNQFP--AGTTATVV 284
                 9766666666666666*************************************999..67777765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0025       6.4      10      36 ..      52      78 ..      47      80 .. 0.50
   2 ?    5.5   0.0    0.0059        15      43      69 ..     155     181 ..     153     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0025
                   EEEEE..ECSESSSTTCEE-TTSEEEEE CS
  Biotin_lipoyl 10 esveeg.vvevlvkvGdkVkagqvlaev 36
                   ++v+ g ++ v v++ + Vk+g++l +v
     EHT99165.1 52 PDVT-GlITDVPVHDNQLVKKGDTLFVV 78
                   3333.33445555555555555555554 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0059
                    EEEEBSSSEEEEEESSTTTEEE-TTCE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdl 69 
                    ++i+ap++G v+ + v +G+ ++ g++
     EHT99165.1 155 TTIKAPSDGWVTNLNVYQGEFITRGSV 181
                    589*****************9999986 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.5   0.00018      0.47      14      81 ..      83     153 ..      81     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeek...qdeeleeleeeleklekeeeelleeLkelekereele 81 
                 ++k l++a+++ + Y++  ++ ++e+   ++   +  ++e++e++  +l+ +e++l +  +  + ++ +le
  EHT99165.1  83 YQKALDEAQADVEYYQALVNEKRREAGRRNQlgtSAMSREAIEQSNNDLQTTEHQLAKSVATRDLAKIDLE 153
                 899**********************9998889997777777777777777777777766665555555554 PP

>> Flp1_like  Putative Flagellin, Flp1-like, domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.5    0.0026       6.7      15      32 ..      13      30 ..      12      32 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0026
   Flp1_like 15 iLIivVligLvliFKkqi 32
                i I++V+i++++iF+ ++
  EHT99165.1 13 ITILLVIIAVIIIFRAWV 30
                669************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      846  (0.0471861); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2187.02
//
Query:       EHT99166.1  [L=67]
Description: membrane protein of efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-19   69.2   7.9    2.6e-19   69.0   7.9    1.1  1  DUF1656   Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   7.9   1.4e-23   2.6e-19       2      56 .]       7      61 ..       6      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 1.4e-23
     DUF1656  2 ldlgGvyvPpllvlallAllltlllrrllarlglyrlvWhpaLfdlAlfvcllgl 56
                ++ +G+ +Pp+++ +++ l+l++l+ r+l+  g+y+lvWhpaLf++Al++c+++l
  EHT99166.1  7 FVMFGLSFPPIFIELIVSLMLFWLVKRVLTPSGIYDLVWHPALFNTALYCCVFYL 61
                6789*************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 522.58
//
Query:       EHT99167.1  [L=305]
Description: transcriptional regulator, LysR family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-37  129.3   0.0    2.4e-37  128.3   0.0    1.4  2  LysR_substrate  LysR substrate binding domain
    5.6e-20   71.1   0.5    1.1e-19   70.1   0.5    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0015   17.9   0.1     0.0034   16.7   0.1    1.7  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
     0.0046   16.7   0.2      0.013   15.2   0.1    1.8  2  HTH_30          PucR C-terminal helix-turn-helix domain
     0.0094   15.8   0.2      0.022   14.6   0.2    1.5  1  MarR_2          MarR family
  ------ inclusion threshold ------
      0.021   15.6   0.0      0.061   14.1   0.0    1.8  2  GST_N_4         Glutathione S-transferase N-terminal domain
        0.1   12.4   0.1       0.48   10.3   0.0    2.0  2  HTH_23          Homeodomain-like domain
       0.14   11.7   0.0       0.28   10.8   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   3.1e+03      25      53 ..      16      42 ..      16      45 .. 0.79
   2 !  128.3   0.0   1.1e-40   2.4e-37       3     206 ..      89     290 ..      87     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
                    HHHHHHHSTTEEEEEEEESHHHHHHHHHT CS
  LysR_substrate 25 larfraryPevelelvegdseelldllae 53
                    l +f+a+  +++l++++ +  +++++l++
      EHT99167.1 16 LGSFTAAARQLHLSVSSIS--QIIARLED 42
                    5678888888888888888..88888876 PP

  == domain 2  score: 128.3 bits;  conditional E-value: 1.1e-40
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                      + g Lrig ++t+a+ +l+ + ++ ++ yP+++++lv+g      dl+a+g lD++ir g + ds+l +r+L+  p+v++a++++ La+ g+p 
      EHT99167.1  89 TPVGVLRIGSSSTMAQNVLAGMTSDMLRDYPGLSVNLVTGI--PAPDLIADG-LDVVIRVGALKDSSLFSRRLGAMPMVVCAAKSY-LAQhGTPE 179
                     5789*************************************..*********.*********************************.***99999 PP

                     CGGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEET CS
  LysR_substrate  97 sledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrk 189
                      ++d+ ++ ++ ++     + +l+      ++l+p++++ +n+ ++l+++ +aG Gia++p ++v+de+++g++  + +p+++   r++y++y +
      EHT99167.1 180 KPADITKFAWLEYSVRPDnNFELIAPEGLVTRLSPQGRFVTNDSQTLIRWLKAGNGIAYVPMMWVADEIKSGEID-ILFPHYQSDpRPVYALYTE 273
                     *************866665999999999999********************************************.******************* PP

                     TCCCHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflre 206
                     ++ l+ +v+  id+l+ 
      EHT99167.1 274 KDKLPLKVQVCIDYLTH 290
                     **************975 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.5     5e-23   1.1e-19       3      60 .]       6      63 ..       4      63 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 5e-23
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 + +f +v+e gsft+AA++L+ls +++s+ i+rLE++l+v+L++R++r++ LTeaG+
  EHT99167.1  6 GMSIFAKVVELGSFTAAARQLHLSVSSISQIIARLEDALQVKLLNRSTRSIGLTEAGK 63
                5889****************************************************95 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.5e-06    0.0034      20      51 ..       9      40 ..       7      41 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
  HTH_Tnp_ISL3 20 ilelllesrsvkavArqlgvSwtTVwrildry 51
                  i++ + e  s++a+Arql++S +++  i+ r+
    EHT99167.1  9 IFAKVVELGSFTAAARQLHLSVSSISQIIARL 40
                  566677778******************99875 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     6e-06     0.013      13      50 ..      17      54 ..      13      56 .. 0.93
   2 ?   -3.5   0.0       4.1   9.2e+03      17      28 ..     294     305 .]     293     305 .] 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6e-06
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                g+ +a+A++Lh+++ ++++ + r+e+ l++ l + ++r
  EHT99167.1 17 GSFTAAARQLHLSVSSISQIIARLEDALQVKLLNRSTR 54
                7899****************************999887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.1
                 HHHHHHTS-HHH CS
      HTH_30  17 atAkaLhvHrnT 28 
                 ++A++   Hr T
  EHT99167.1 294 QVAEQYKQHRKT 305
                 68999999*998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   9.9e-06     0.022      24      48 ..      19      43 ..      13      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.9e-06
                HHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 24 vgelarrlglsksavsrilkrLvaa 48
                 ++ ar l+ls s++s+i++rL++a
  EHT99167.1 19 FTAAARQLHLSVSSISQIIARLEDA 43
                6788******************986 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         8   1.8e+04      45      59 ..      30      44 ..      25      55 .. 0.69
   2 ?   14.1   0.0   2.7e-05     0.061      11      57 ..     186     232 ..     184     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8
     GST_N_4 45 iadsefiieflkekg 59
                +++ + ii++l++  
  EHT99167.1 30 VSSISQIIARLEDAL 44
                667778888887655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.7e-05
     GST_N_4  11 rmagipyelepssn.e.mhaspkgklPfielngelliadsefiieflke 57 
                 ++a ++y ++p++n e +  +p+g +  + ++g+++ +ds+ +i++lk+
  EHT99167.1 186 KFAWLEYSVRPDNNfElI--APEGLVTRLSPQGRFVTNDSQTLIRWLKA 232
                 8999**********7766..9*************9************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00022      0.48      19      43 ..      18      41 ..       2      45 .. 0.82
   2 ?   -1.4   0.0         1   2.3e+03      32      45 ..     224     235 ..     223     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
      HTH_23 19 svreIAreLgvsrrTvyrwlkryre 43
                s +++Ar+L+ s + +++++ r  e
  EHT99167.1 18 SFTAAARQLHLSVSSISQIIARL-E 41
                66899****************96.4 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
      HTH_23  32 rTvyrwlkryreeG 45 
                 +T+ rwlk+   +G
  EHT99167.1 224 QTLIRWLKA--GNG 235
                 5889***98..555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.28      23      43 ..      22      42 ..      18      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
      HTH_24 23 LAerlglSpstvnrrlkrLee 43
                 A++l+lS+s +++ + rLe+
  EHT99167.1 22 AARQLHLSVSSISQIIARLED 42
                59******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2407.80
//
Query:       EHT99168.1  [L=481]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-68  229.5   0.3      1e-67  228.9   0.3    1.3  1  PmbA_TldD  Putative modulator of DNA gyrase
  ------ inclusion threshold ------
       0.25   11.5   2.4         20    5.4   0.0    2.9  3  TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domai


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.9   0.3   1.2e-71     1e-67       1     279 []      35     332 ..      35     332 .. 0.94

  Alignments for each domain:
  == domain 1  score: 228.9 bits;  conditional E-value: 1.2e-71
                 EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEE...ESSHHHHHHHHHHHHHHCCS---TT-.................GGS-HHH CS
   PmbA_TldD   1 eaevrleesestsvrfengevetnsssedsglgvrvikggrlgfastldtsdealeeaveraveiaklapedpea.................eevsaee 82 
                 +a++++++s  +s+ +e++ ++  s+ +d+g+gvr+++g+++gfa++++++ +al+   e+a +i +++++ +                   +++s e+
  EHT99168.1  35 YADLYFQSSFHESWVLEDKIIKDGSYHIDQGVGVRAVSGEKTGFAYADQITMNALRLSSEAARSIVREQGNGKAHtlsavvnralyapvdplGSLSRED 133
                 89********************************************9988878999888999999988888888899999******************* PP

                 HHHHHHHHHHH.CHCSTTEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE..STCS..ET.EEEEEEEE.....SSHHHS..S CS
   PmbA_TldD  83 kielleelekalrsadpkienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsvia.ddggs..gd.gmgggsgy.....edleeedle 172
                 ki+ll+++++ +r+adp        r++ v+asl++++e++l+a ++G+ + + r+ v+ls+sv + d+g++  g+ g g ++gy     ++  + +++
  EHT99168.1 134 KIALLHRVDQVARAADP--------RVQEVNASLTGVYEQVLVAATDGTLAADVRPLVRLSISVQVeDQGKRerGTsGGGARTGYafflaDENGDVRAD 224
                 *****************........*****************************************665444577778888888887877444557889 PP

                 SHHHHHHHHHHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHHTT--TTTT-TTSB-S-TT--EEEETT-......-SB-TTSBB---EEE CS
   PmbA_TldD 173 eiaeeaaekalasleakplppgkypVvlspeavgsllheavghaleadavlegrSflkdklGekvaselltivddpts.gglgsypfDdEGvptqrtvl 270
                 + a+ea+++al +l a+++p+g  pVvl++++ g+llheavgh+le+d++++g+S++++k+G+ vas+l+t+vdd+t+ g +gs ++DdEGvp q +vl
  EHT99168.1 225 AWAREAVRMALVNLSAVAAPAGALPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGKMGQLVASDLCTVVDDGTIeGLRGSLAIDDEGVPGQYNVL 323
                 9********************************************************88**************************************** PP

                 EETTEE--- CS
   PmbA_TldD 271 IenGvLkny 279
                 IenGvLk+y
  EHT99168.1 324 IENGVLKGY 332
                 ********9 PP

>> TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0022        20      25      63 ..       9      49 ..       3      55 .. 0.87
   2 ?    4.6   0.2    0.0039        35      42      83 ..     147     188 ..     136     201 .. 0.88
   3 ?   -2.4   0.1      0.61   5.4e+03      69      82 ..     222     235 ..     219     247 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0022
   TetR_C_35 25 avltge..akedLlpllTtdseplleaAsarlaevlaeswp 63
                ++lt++  +++dL +ll + se+ l+ A    ++ ++esw+
  EHT99168.1  9 QLLTANniNQQDLFSLLGQLSERRLDYADLYFQSSFHESWV 49
                5666667899******************************8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0039
   TetR_C_35  42 dseplleaAsarlaevlaeswpqldeadaevladavvRlalS 83 
                  ++p +++ +a l+ v+++  +++++ ++++ ++ +vRl++S
  EHT99168.1 147 AADPRVQEVNASLTGVYEQVLVAATDGTLAADVRPLVRLSIS 188
                 5778899999******************************99 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.61
   TetR_C_35  69 daevladavvRlal 82 
                 +a++ a+  vR+al
  EHT99168.1 222 RADAWAREAVRMAL 235
                 56778888899886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3487.91
//
Query:       EHT99169.1  [L=1275]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-95  318.9   2.9    4.2e-94  315.4   0.8    3.2  3  DUF3971   Protein of unknown function
    1.1e-67  228.0   9.3    1.1e-64  218.1   1.2    4.9  5  AsmA_2    AsmA-like C-terminal region


Domain annotation for each model (and alignments):
>> DUF3971  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.11   9.5e+02     176     214 ..     428     466 ..     413     500 .. 0.67
   2 !  315.4   0.8   4.7e-98   4.2e-94       2     284 ..     505     783 ..     504     789 .. 0.97
   3 ?    0.9   0.0      0.03   2.7e+02      36      73 ..    1059    1096 ..    1053    1113 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.11
     DUF3971 176 vkvsGevtlknnnlslknpdleltnvsGeleFdn..eglta 214
                 + + G++t+   +++    +le+++++G+l+ +   +glt 
  EHT99169.1 428 AIAMGQATVPYGDMFQA--PLEIKQITGNLNWTQdkQGLTL 466
                 57788888888888877..9999999999999865644443 PP

  == domain 2  score: 315.4 bits;  conditional E-value: 4.7e-98
     DUF3971   2 kdlqkikrYlPkllmgeelkdWLktaikagkvenatlvfkgdlkdfpfkdnegeFqvdaklkdaelkFqpdwpaledlsadllfennsleinlesgtlg 100
                  ++++++rY+P++ mg++l+++L++aik+gkv natl+f+g++  fpf++n+g Fqv+++l++a+++Fqp+wp l +l++dl+f n++l++n++ ++lg
  EHT99169.1 505 TNAGDAWRYFPTPIMGHSLTHYLSGAIKGGKVSNATLLFNGNPALFPFQHNDGMFQVWVPLRQATYAFQPGWPDLSNLDIDLNFLNDGLWMNAPLAKLG 603
                 5899*********************************************************************************************** PP

     DUF3971 101 gvsldgvkvvIpdllakkkvleidgkakgslkailkylkaspLadslgealdelqvsGevslnLnLdiplkngeevkvsGevtlknnnlslknpdlelt 199
                 +v++ +v++vIpd+l++k  l i g+++g++++i +y++++pL++slg+al++lqv+G ++++L+Ldipl+ g++v++ G+v+++nn+l++k++++++t
  EHT99169.1 604 EVDARNVSAVIPDYLKEK--LIINGDISGDGQQIGEYFQHTPLKSSLGAALEQLQVKGLTKGHLKLDIPLN-GKDVHACGDVQMNNNSLHIKPLNTTMT 699
                 **************7777..**************************************************9.998************************ PP

     DUF3971 200 nvsGeleFdnegltaknlsanllgqplnltiktkekkkdgdvsiklkgkwaaasllkklpaplddrlsGeadwqlklslklkdkg 284
                 +++G+++++n++l++++l+an++gqp+ ++++t+e+++d+ v++kl+++w+ a++   +p +++++l G+++wq++++++l++kg
  EHT99169.1 700 HLTGQFRYNNGNLESDTLQANWFGQPIDVSFTTQENPDDFGVNVKLQADWQLAKI-NDIPRQISSQLAGHLPWQGEVNVTLPHKG 783
                 *******************************************************.55***********************9554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.03
     DUF3971   36 atlvfkgdlkdfpfkdnegeFqvdaklkdaelkFqpdw 73  
                  ++ ++kg l+ + +++ +++F v+ +l+da +k + d+
  EHT99169.1 1059 QRTSLKGTLQGSNINNTTNWFGVNTPLRDAPFKINYDL 1096
                  56678999***9999888************88766653 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.28   2.5e+03       2      25 ..      55      78 ..      54      86 .. 0.85
   2 !    5.0   0.1    0.0017        15      77     141 ..     399     456 ..     398     504 .. 0.86
   3 ?    0.2   0.0     0.052   4.6e+02      52      81 ..     645     674 ..     614     687 .. 0.80
   4 !    5.4   0.0    0.0013        12       2      52 ..     699     747 ..     698     792 .. 0.77
   5 !  218.1   1.2   1.2e-68   1.1e-64       2     229 .]    1019    1261 ..    1018    1261 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.28
      AsmA_2  2 gnvsgklrlkdeglrldnlrlrsp 25
                ++++gk+++ + +l++++l+ ++ 
  EHT99169.1 55 SQLKGKWENFGPTLQIRDLNVDMK 78
                689999************999875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0017
      AsmA_2  77 nlswqgaplspdlssLsGdlsleledgqilgvsllrdlgllkltldfrdlfgeglafddikgtft 141
                 ++swq ++l p  s L+G+++  l+dgq +     +  +  ++t    d f+  l+++ i+g+++
  EHT99169.1 399 DFSWQYWKLVPGISHLNGEATGSLNDGQAAI----A--MG-QATVPYGDMFQAPLEIKQITGNLN 456
                 689************************9886....4..22.135566888888888888888775 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.052
      AsmA_2  52 gvdlgallkrlglaevlgGkgslelnlswq 81 
                  ++lga+l++l+ ++  +G+++l++ l+++
  EHT99169.1 645 KSSLGAALEQLQVKGLTKGHLKLDIPLNGK 674
                 567999999999999999999999999875 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0013
      AsmA_2   2 gnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldg 52 
                 ++++g++r ++++l+ d l+++++g+ +++s++ +++ +  ++ +++kl+ 
  EHT99169.1 699 THLTGQFRYNNGNLESDTLQANWFGQPIDVSFTTQENPD--DFGVNVKLQA 747
                 7899***************************99999844..4444444433 PP

  == domain 5  score: 218.1 bits;  conditional E-value: 1.2e-68
      AsmA_2    2 gnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevl.gGkgslelnlswqgaplspdlssLsGdls 97  
                  g+vs+ l++k+ +l l+n   ++++ +l+++g+w ++ + +rt+l++ l+g++++ +++ +g ++ l ++ ++++++l+w+ ap++p+ ++LsG+l+
  EHT99169.1 1019 GRVSAGLQPKGSTLALTNGLVDTGSSRLNIQGEWVNRPNDQRTSLKGTLQGSNINNTTNWFGVNTPLrDAPFKINYDLHWRAAPWQPSAETLSGTLK 1115
                  799**********************************888***************************999*************************** PP

      AsmA_2   98 leledgqilgvs.........ll.rdlgllkltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvvvvppi 184 
                     ++gqi++v+         ll +d+ l+kl++df+d f++g++fd+i+gt++ie+Gv++t+++ ++g +a+++++G++dl ++++d+++ v+p+i
  EHT99169.1 1116 THFGKGQITDVDtgaagqilrLLsFDALLRKLRFDFSDTFKQGFYFDSINGTAWIEDGVIRTDNLSVDGLEADIAMQGNMDLVKRRIDMEAIVTPEI 1212
                  ***************9999864479999999****************************************************************** PP

      AsmA_2  185 saslavvaalain....laalaaqkllsddlekiaaleyrvtGswdsPk 229 
                  sas+ v++a+ain    +a++aa+k+l++ ++ki+ l+y+++G++d+Pk
  EHT99169.1 1213 SASVGVATAFAINpvvgAAVFAASKVLGPLWSKISVLRYHISGPLDKPK 1261
                  ************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 9207.73
//
Query:       EHT99170.1  [L=489]
Description: RNase G [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-99  332.0   0.1    4.7e-99  331.2   0.1    1.4  1  RNase_E_G  Ribonuclease E/G family
    8.5e-06   26.0   0.9    2.7e-05   24.4   0.1    2.1  2  S1         S1 RNA binding domain


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.2   0.1  5.2e-103   4.7e-99       1     270 []     124     393 ..     124     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 331.2 bits;  conditional E-value: 5.2e-103
   RNase_E_G   1 slaGrylVllpegkkvgvSkkiedeeererlkelleelkpeevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvlrd 99 
                 +l++rylV++p +++vgvS++i +e+ere lk+++++++++  G+I+Rtaaeg  eeel++d+++lk+ w+++ e+ k++++  lly e  l++r+lrd
  EHT99170.1 124 TLPSRYLVFMPGASHVGVSQRIASEKERECLKAVVADYCDDLGGFIIRTAAEGIGEEELAQDAAFLKRLWTKVSERKKRNQTRCLLYGELALAQRILRD 222
                 69*********99999***********************9999***********************************9999***************** PP

   RNase_E_G 100 llnedieeivvddkelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkknleetvl 198
                 ++ + +++i vd++ +++ +ke+++e+ pe+++k+ely++++p+f+l+++e++i++ l+rkv+lksGgyl+I+qTEA+t+ID+N+G f+g++nl+et++
  EHT99170.1 223 FAGAALDRIRVDSRLTCDLLKEFTSEYIPEMSSKLELYNGKQPIFDLFDVENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLDETIF 321
                 *************************************************************************************************** PP

   RNase_E_G 199 ktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkrv 270
                 +tN+eA++ iarqlrLRnlgGiI+iDFIdm++e++r++vl+ l+ al+kDr+kt ++++++lgLve+tRkr+
  EHT99170.1 322 NTNVEATQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLHSLETALSKDRVKTGISGFSALGLVEMTRKRT 393
                 **********************************************************************96 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1     3e-09   2.7e-05       4      62 ..      38     109 ..      37     121 .. 0.90
   2 ?   -1.6   0.1       0.4   3.6e+03      50      62 ..     465     477 ..     459     482 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3e-09
                 TTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS...........CEESCHHHCEETTEEEEEEEEE CS
          S1   4 kgevveGeVtsvtk..gGafVelgngvegfvpaselsrd...........arvedpdevlkvGdevkvkvlk 62 
                 +g++++G V++v +   +afV++g +  +f++as+++ +             v+d+ e +++G+ + v+v k
  EHT99170.1  38 VGNIYKGRVSRVLPgmQAAFVDIGLDKAAFLHASDIMPHtecvagdekknFVVRDIAELVRQGQDLVVQVVK 109
                 79************999********************9999**99999997789999999999999999987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.4
                 EETTEEEEEEEEE CS
          S1  50 lkvGdevkvkvlk 62 
                 l vG++vkv v+ 
  EHT99170.1 465 LFVGKQVKVHVEA 477
                 4578888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3695.45
//
Query:       EHT99171.1  [L=193]
Description: Maf family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-58  197.7   0.0    1.3e-58  197.6   0.0    1.0  1  Maf       Maf-like protein


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.0     7e-63   1.3e-58       2     165 ..       4     184 ..       3     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 197.6 bits;  conditional E-value: 7e-63
                 EEEE---HHHHHHHHCT-..EEEE------.......HHHHHHHHHHHHHHHHH.......TCEEEEEEEEEE...CE---SSHHHHHHHHHHHTTSEE CS
         Maf   2 liLASaSprRkelLeqlg..fevvpsdvde.......aeelvlrlAeaKaeava.......alvigaDtvvvl...ilgKPkdeeealemLkklsgrth 81 
                 l+LASaSprR+elL+qlg  fe +++dv+e       ae +v+rlA++Ka+a +         v+gaDt+vvl   +l+KP+d+++a +mL+klsg+th
  EHT99171.1   4 LYLASASPRRRELLSQLGitFERLVTDVEEqrqpgetAEGYVRRLAHDKAKAGVtvarqdlP-VLGADTIVVLngeVLEKPHDADHASAMLSKLSGKTH 101
                 89****************999********999***9*999***********99977787633.*********96655********************** PP

                 EEEEEEEEEEEEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS-HHHHHT--HHHHHHHHCC CS
         Maf  82 evvTgvavlkekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieGsysnVvGLPlaellelLke 165
                 +v+T++a++++++v  +++ tevtf++l+ ++i++Y+atgep+dkAGaygiqg+ g+ +v++i+Gsy++VvGLPl e++el+++
  EHT99171.1 102 QVMTAIALADRQQVLDCLVVTEVTFRNLTAHDINEYIATGEPMDKAGAYGIQGK-GGNFVRKINGSYHAVVGLPLVETAELIDQ 184
                 **********99999**************************************8.777**********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1379.48
//
Query:       EHT99172.1  [L=162]
Description: cell wall structural complex MreBCD transmembrane component MreD [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-43  146.3  21.8    8.8e-43  146.1  21.8    1.0  1  MreD      rod shape-determining protein MreD


Domain annotation for each model (and alignments):
>> MreD  rod shape-determining protein MreD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1  21.8   4.9e-47   8.8e-43       2     159 ..       5     154 ..       4     155 .. 0.99

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 4.9e-47
        MreD   2 rfllqwlllislfllalvlglipmpvstlvlrPhflllvllywvialpervgiitafvlGllyDvlygsllGvyalvlslilylvaklqkvlrlnrrfl 100
                 r++++w++++s fl+a++l+++p+p +++++rP++lll+l+ywv+alp+rv+++++f+lG+++D++ gs+lGv+al+ls+i+ylva  ++++r+    l
  EHT99172.1   5 RSQGRWVIWLS-FLMAFILQIMPWPEQIYMFRPSWLLLILVYWVLALPHRVNVGSGFLLGAIMDLIAGSTLGVRALALSIIAYLVAFKFQLFRN----L 98 
                 8899*******.**********************************************************************************....* PP

        MreD 101 pavlqvlllellvlvialliglaeldligfvvyrllPtlllnfllailLvppvfkLlrk 159
                 ++++q+l++++l+l +++++++ae+ l+++v++r  P+++++ ++ ++L+p++f+L+rk
  EHT99172.1  99 ALWQQALMVMVLSLAMDVIVFWAEF-LVINVSFR--PEIFWSSVVDGILWPWLFLLMRK 154
                 *************************.********..*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1390.57
//
Query:       EHT99173.1  [L=340]
Description: cell wall structural complex MreBCD transmembrane component MreC [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-37  129.1   0.1    1.8e-37  128.6   0.1    1.3  1  MreC      rod shape-determining protein MreC


Domain annotation for each model (and alignments):
>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.1   9.8e-42   1.8e-37       1     149 [.     123     269 ..     123     270 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 9.8e-42
                 EEEE-GCCTTTEEEES--GGGT--TT-EEEETTEEEEEEEEE-SS-EEEEETTSCCE.EEEEEE.CTTEEEEEEEETTTTEEEEEEE.CT-..--TT-E CS
        MreC   1 VisrspdnwnssltIdkGskdgvkkgmpVvsgkglVGkVtevgknssrVllitdssssvsvkvkrtgergilegkddekkeleleylpkeaadvkkgdl 99 
                 Vis  +d+++++++IdkGs++gv +g+pV+s+kg+VG+V+ vg+ +srVlli+d s++++++v r++ r i+ g +  ++ l+le+lp + +d+++gd 
  EHT99173.1 123 VISTGTDPYTDQVVIDKGSANGVYEGQPVISDKGVVGQVIAVGQFTSRVLLICDASHALPIQVLRNDIRVIAAG-NGCTEDLQLEHLPGN-TDIRVGDV 219
                 89999*********************************************************999999999988.456899******999.9******* PP

                 EEEE-TTSSS-CCEEEEEEEEEEE-TTSSEEEEEEEESS--SS--EEEEE CS
        MreC 100 vvTsglggvfpkglpvGtVekveedkeglfkkievkpavdfdkleeVlVi 149
                 +vTsglgg fp+g+pvG V++v+ d++ ++  i+++p + +++l++ l++
  EHT99173.1 220 LVTSGLGGRFPEGYPVGVVSSVKVDTQRAYTVIQAHPTAGLQRLRYLLLL 269
                 *********************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2617.67
//
Query:       EHT99174.1  [L=347]
Description: cell wall structural complex MreBCD, actin-like component MreB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-150  500.8   3.4   1.6e-150  500.5   3.4    1.0  1  MreB_Mbl  MreB/Mbl protein
    2.3e-13   49.2   0.2    4.6e-13   48.2   0.1    1.6  2  HSP70     Hsp70 protein
    2.4e-11   43.9   0.2    8.2e-11   42.2   0.0    1.9  2  FtsA      Cell division protein FtsA
    3.6e-10   39.0   0.0    2.1e-06   26.6   0.0    2.2  2  Actin     Actin
    1.2e-07   31.2   0.0     0.0025   16.9   0.0    2.4  2  PilM_2    Type IV pilus assembly protein PilM;
    0.00063   19.3   0.1     0.0011   18.5   0.1    1.4  1  Ppx-GppA  Ppx/GppA phosphatase family
     0.0026   16.7   0.2     0.0041   16.0   0.2    1.3  1  EutA      Ethanolamine utilisation protein EutA
     0.0042   16.1   0.4      0.012   14.7   0.1    1.8  2  DDR       Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.5   3.4    7e-154  1.6e-150       2     324 ..      11     338 ..      10     340 .. 0.99

  Alignments for each domain:
  == domain 1  score: 500.5 bits;  conditional E-value: 7e-154
                 SEEEEEE-SSEEEEEETTTEEEEEEES-EEEETT....T--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-S.S--E CS
    MreB_Mbl   2 kdlgiDLGtantlvyvkgkgivlnepsvvAikkk....tkkvlavGeeAkkmlgktpgnikavrPlkdGviadlevaeellkyfikkvkkkksl.skpr 95 
                 +dl+iDLGtantl+yvkg+givlnepsvvAi+++     k+v+avG++Ak+mlg+tpgni a+rP+kdGviad+ v+e++l++fik+v++++++ ++pr
  EHT99174.1  11 NDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDragsPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMrPSPR 109
                 89*******************************9888899**************************************************9988789** PP

                 EEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSE CS
    MreB_Mbl  96 vvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynl 194
                 v++cvP g+t+verrA++e+a+ aGarev+lieep+aAAiGaglpv+e++g+mvvdiGggttevavisl+g+v+s+svr++Gd++deaii+y+r++y  
  EHT99174.1 110 VLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGS 208
                 *************************************************************************************************** PP

                 E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHH CS
    MreB_Mbl 195 liGertaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkll 293
                 liGe+tae+ik+eigsa++ +e +++e++Gr+l++g+p+ ++++s+e+ eal+ep++ iv+av  +Le++ppeLa+di +rg+vltGGgall++ld+ll
  EHT99174.1 209 LIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL 307
                 *************************************************************************************************** PP

                 HHHHSS-EEE-SSTTTHHHHHHHHTTC-HHH CS
    MreB_Mbl 294 seetglpvkvaedpltcvakGtgkvleklkk 324
                 +eetg+pv vaedpltcva+G gk+le++++
  EHT99174.1 308 MEETGIPVVVAEDPLTCVARGGGKALEMIDM 338
                 ***************************9886 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.39   8.7e+02       4      19 ..      15      30 ..      13      75 .. 0.63
   2 !   48.2   0.1     2e-16   4.6e-13     130     239 ..     104     207 ..      74     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.39
                EEEXSSEEEEEEEETT CS
       HSP70  4 iDLGttnsvvavmegg 19
                iDLGt n+++ v  +g
  EHT99174.1 15 IDLGTANTLIYVKGQG 30
                9999999999886554 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 2e-16
                 TSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHH CS
       HSP70 130 gkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfdvSilelekGvfevkaTagDthlGGedfDe 228
                  ++   + + vP   +  +R+a+++ ++ AG   + ++ ep Aaa+  Gl  ++     +v+D+Gggt++v +++l+  v+     +   ++GG+ fDe
  EHT99174.1 104 MRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSE-ATGSMVVDIGGGTTEVAVISLNGVVY-----SSSVRIGGDRFDE 196
                 4555678999*******************************************9.7777899**************86544.....45679******** PP

                 HHHHHHHHHHH CS
       HSP70 229 alvehlveefk 239
                 a+++++++++ 
  EHT99174.1 197 AIINYVRRNYG 207
                 ******99886 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   4.2e+03       3      20 ..      15      32 ..      13      61 .. 0.70
   2 !   42.2   0.0   3.7e-14   8.2e-11       1      86 [.     162     311 ..     162     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
                EEE-SSSEEEEEEETTEE CS
                xxxxxxxxxxxxxxxxxx RF
        FtsA  3 vDiGagktdvavaedgal 20
                +D+G+  t + v  +g +
  EHT99174.1 15 IDLGTANTLIYVKGQGIV 32
                788888887777666554 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 3.7e-14
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHH......T--HHHHHHHHHHH--S--EEEEEHHHHH....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkdiakal......rtaveeAerikikyGsalaekeigrkels....................... 70 
                 ++vDiG+g+t+vav++ +++v+++++ +gg+ +++ i + +       +  ++Aerik+++Gsa++  e+ + e+                        
  EHT99174.1 162 MVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVrrnygsLIGEATAERIKHEIGSAYPGDEVREIEVRgrnlaegvprgftlnsneileal 260
                 59**********************************766663333335668999************555554444466666888888889999999999 PP

                 ...................................GGGGSTTHHHHHHHHH CS
                 ...................................xxxxxxxxxxxxxxxx RF
        FtsA  71 ...................................ggsalpnleelaeral 86 
                                                    gg+ l+nl++l+ + +
  EHT99174.1 261 qepltgivsavmvaleqcppelasdisergmvltgGGALLRNLDRLLMEET 311
                 999999999999999999999999999*****************9988774 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   9.6e-10   2.1e-06      45     196 ..      52     211 ..      13     240 .. 0.78
   2 !   10.3   0.0   8.3e-05      0.19     299     344 ..     261     306 ..     245     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 9.6e-10
       Actin  45 klyvgde..alt..krpelevrspvedGvvedwdaveelwehvlkeelkvd..peehpllltepplnppkqrekalEivfEkfkvpalylaksavlsaf 137
                    vg++  ++     +++   +p++dGv+ d  ++e++++h +k+  ++   + + ++l+  p+ +++ +r  + E +    +   ++l ++++ +a 
  EHT99174.1  52 VAAVGHDakQMLgrTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSfmRPSPRVLVCVPVGATQVERRAIRESA-QGAGAREVFLIEEPMAAAI 149
                 45566664333342356788899*********************997555455678889999***********999987.68899************** PP

       Actin 138 asgks.....tglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevtp 196
                  +g+       ++vvD+G ++t v+ +  + v+  + +   +gG+  +e + ++++++  +++ 
  EHT99174.1 150 GAGLPvseatGSMVVDIGGGTTEVAVISLNGVVYSSSV--RIGGDRFDEAIINYVRRNYGSLIG 211
                 ***998888789**************977767666544..59****999999999986555554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.3e-05
       Actin 299 kskllgiselivaainacdvdlrpeLlan.ivvtGGnsllpglteRl 344
                 ++ l+gi + ++ a+++c+++l +++ ++  v+tGG +ll++l   l
  EHT99174.1 261 QEPLTGIVSAVMVALEQCPPELASDISERgMVLTGGGALLRNLDR-L 306
                 66789*********************98769**********9854.4 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0025     178     243 ..     157     226 ..     137     233 .. 0.85
   2 !   11.6   0.0   4.4e-05     0.099     278     306 ..     291     319 ..     281     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
      PilM_2 178 kekvvaivdigasrttlsvlrdgkivYtreqafGgeqltqeiv....rrYglsleeaekkkrsgslPedy 243
                 +++  ++vdig  +t+++v++ + +vY+     Gg+++ + i+    r+Yg    ea ++++++++++ y
  EHT99174.1 157 EATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIInyvrRNYGSLIGEATAERIKHEIGSAY 226
                 556779*******************************9999873333689*9999999999999999888 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.4e-05
      PilM_2 278 ilLaGGtaslpgleelleeelgisttvan 306
                 ++L+GG a l +l++ll ee+gi+++va+
  EHT99174.1 291 MVLTGGGALLRNLDRLLMEETGIPVVVAE 319
                 79*************************96 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     5e-07    0.0011     111     152 ..     158     199 ..     142     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5e-07
                 -SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHS CS
    Ppx-GppA 111 kgrglviDiGGGStElvlgeekevsklvSlplGavrlterfl 152
                 +   +v+DiGGG tE++++  + v+ ++S ++G  r+ e ++
  EHT99174.1 158 ATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAII 199
                 444589***************************999988665 PP

>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.8e-06    0.0041     138     203 ..     156     215 ..     142     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
        EutA 138 skekstrvlniDiGGGtsnlalfkeGevidtacldvGGrlikidkdtkkityispklkkiieelgl 203
                 s+ +    + +DiGGGt+ +a+++   v+ ++++ +GG    +d+  + i+y++ +  ++i e + 
  EHT99174.1 156 SEAT--GSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDR--FDE--AIINYVRRNYGSLIGEATA 215
                 4433..34558**************99***********84..564..7788888888777766554 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   5.2e-06     0.012     116     165 ..     142     191 ..      81     222 .. 0.79
   2 ?   -1.0   0.0      0.31   6.9e+02     256     297 ..     268     310 ..     265     319 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.2e-06
         DDR 116 vEaemAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAG 165
                  E+ +A++Ga       + ++++D+G+G+t+ a+i+ +g v +  +   G
  EHT99174.1 142 EEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGG 191
                 5778889999888888999******************9999765544444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
         DDR 256 vtnalRalkkvsptgnirdid..fvvlvGgsalDfEipelvtda 297
                 v+ ++ al++  p+    di+   +vl Gg+al  ++ +l++++
  EHT99174.1 268 VSAVMVALEQCPPEL-ASDISerGMVLTGGGALLRNLDRLLMEE 310
                 556667888887765.33333115899*****999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2543.72
//
Query:       EHT99175.1  [L=649]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-37  127.6   0.0    1.1e-36  126.6   0.0    1.5  1  EAL       EAL domain
    2.9e-25   88.5   0.8    8.8e-25   87.0   0.8    1.9  1  GAPES4    Gammaproteobacterial periplasmic sensor domain
      2e-21   76.4   0.0    3.1e-21   75.8   0.0    1.3  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
       0.22   11.8   0.9          3    8.1   0.0    2.5  3  MLANA     Protein melan-A


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   2.5e-40   1.1e-36       4     237 ..     406     632 ..     403     633 .. 0.94

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 2.5e-40
                 HHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CCH CS
         EAL   4 lrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladeef 102
                 l++ l+++  +ly  P v  ++gkv +  +l+r+ + d+++   +e++pl+++lg+ ++ dr+++ ++ +    +     ++  l i +s +sl  + f
  EHT99175.1 406 LENTLSRGGPRLYQKPAV-DREGKVRHRVILSRIFDGDKEV-LSAEYMPLVQQLGMVESWDRQMVLRIAALSELW-----PEETLVIPVSIDSLLKRPF 497
                 5667888999999*****.6*******************96.6999******************99998866666.....57789******9999999* PP

                 HHHHHHHH.HCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHH CS
         EAL 103 leelrell.kqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalial 200
                 + +l+++l +  + +++r+ +e++e ++ ++ + l   vl++L+a G+ria++++g    s +y++ lp+  iKld+ l++++e+  e+q +v++l+++
  EHT99175.1 498 VVWLQRMLlACPKSQRKRFLFELAEGDVCQHISRLI-PVLHSLQAFGCRIAISQAGLTVVSSAYIRQLPVALIKLDAGLVRNIERRTENQLFVRSLLDV 595
                 ********99999***************88888887.************************************************************** PP

                 HCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT-- CS
         EAL 201 akelgikvvaegVeteeqlealrelgcdlvQGyllsk 237
                 +k  g ++ a gV t++++++l elg++ +QG+l+s+
  EHT99175.1 596 CKPTGTRLYAAGVRTKAEWQTLVELGVEGGQGDLFSP 632
                 ***********************************98 PP

>> GAPES4  Gammaproteobacterial periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.8     2e-28   8.8e-25       1      98 []      33     130 ..      33     130 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 2e-28
      GAPES4   1 lsqeklehrlqavatvvDkeLltespqslqrwLpklmkaadivelelssgdktvYslklpesyrpedsanrlrevelpLlkhpgmslrlkyvdPlasy 98 
                 l+++++e+r+q +at+vD+ Ll+++p++l+ wL  ++ ++++ +l+l +g ++v++l+++e+++ e+++nr++++++ L+++pgm+l+l+++dP++++
  EHT99175.1  33 LTHQRVESRVQVLATEVDNVLLSQPPDALKAWLAPMLPVINAEQLSLYNGRQPVFTLSRHENQMLEHEKNRYIHFDIALMHQPGMRLQLTILDPAQTW 130
                 579*******************************************************************************************9987 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   6.8e-25   3.1e-21       1     160 [.     227     383 ..     227     384 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 6.8e-25
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T..TSEEEEESSSEEEEEEECSSHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk..sdlvaRlggdeFaillpetsseeaa 97 
                 aahD  TgL+NR +++++l+++l+++++ +++ +v+++ + ++ +   ++G    +e L +v + Ls+++++  + l+aR+   +Fa+llp+ s++   
  EHT99175.1 227 AAHDGRTGLNNRLFFDNQLATLLEDQEDVGTHGVVMMIRFPELDTHDHSLGPVLVEEYLFNVVNMLSTFVMRypGALLARYFRSDFAVLLPHRSLK--- 322
                 78************************999******************************************999********************86... PP

                 HHHHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF  98 elaerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 e+++++++l+++++    +++ +++  i+iGi++++  +g+++ ++++++++a ++a  +g n
  EHT99175.1 323 EANSIADQLINAVDALPPMRMVNRDDFIHIGISAWH--SGQTVPQVMENVEMATRRATLSGGN 383
                 888888888888888888888888899********6..*******************999988 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.097   4.4e+02      27      45 ..      10      28 ..       2      47 .. 0.79
   2 ?    8.1   0.0   0.00067         3      27      76 ..     142     193 ..     133     211 .. 0.75
   3 ?   -3.4   0.0       2.6   1.1e+04      28      51 ..     529     552 ..     521     563 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.097
       MLANA 27 GigllvvvLaillllgCwy 45
                 i+l+ v+  +l+l+gC +
  EHT99175.1 10 FITLISVLAMVLMLVGCAF 28
                577777777778899**87 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00067
       MLANA  27 GigllvvvLaill.llgCwyykrrsGYkslrskslkvstlk.tlvgegelee 76 
                  ++l+v+++a++l ++  w +++ +G  +l+s+s+++ + + t++++++ +e
  EHT99175.1 142 ALVLVVLIMAVMLsIIHRWLVRQWRGMEHLESRSASILAGErTFFRQKQRDE 193
                 567888999987758999**************99987665404445544444 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.6
       MLANA  28 igllvvvLaillllgCwyykrrsG 51 
                 i+ l+ vL  l  +gC     + G
  EHT99175.1 529 ISRLIPVLHSLQAFGCRIAISQAG 552
                 666888999999999976666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 4968.40
//
Query:       EHT99176.1  [L=334]
Description: putative reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-29  102.6   0.0    4.6e-29  101.2   0.0    1.6  2  Oxidored_molyb  Oxidoreductase molybdopterin binding domain
     0.0021   17.8   1.2     0.0033   17.2   1.2    1.3  1  TAT_signal      TAT (twin-arginine translocation) pathway sig


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.28   2.5e+03      94     117 ..      47      80 ..      21      83 .. 0.66
   2 !  101.2   0.0   5.2e-33   4.6e-29       8     172 .]     108     267 ..     101     267 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.28
                     EEEEEEEEE-T..........CCTEEEEEEEHHH CS
  Oxidored_molyb  94 hvvfegadeel..........eeskygasiplek 117
                       +f+g d++           ++ +y+a++pl+ 
      EHT99176.1  47 LSWFKGNDRPAapagrpldftKPAQYQANLPLTP 80 
                     4567777755567777777778899999999875 PP

  == domain 2  score: 101.2 bits;  conditional E-value: 5.2e-33
                     GCCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEEEEEE CS
  Oxidored_molyb   8 dpekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvvfegad 101
                     +++ w+l+++g+v+kp++l +dd+ + +  ++++++++C++               w    ++ + W G+ l+++L+ a+++ ++ar+v f+ + 
      EHT99176.1 108 KTDPWKLTIEGEVAKPVTLDMDDIFKrFAMEQRIYRMRCVE--------------AW----SMVVPWIGFELNKLLKLAEPT-SKARFVAFQTLY 183
                     5789********************766**************..............8*....9*******************7.9*********85 PP

                     E-T.............CCTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb 102 eel.............eeskygasiplekaleddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                     ++               + +y + ++l++a++  ++L + + g++Lpp++G+P+Rl vp+ +g++ +K + +i++++++ ++ w
      EHT99176.1 184 APDqmpgqkdrfigggLNYPYVEGLRLDEAMHPLTILTTGVYGKALPPQNGAPIRLTVPWKYGFKGIKSIVKITLTHDQPPTTW 267
                     433567888899999999*************5579******************************************9998887 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.2   3.7e-07    0.0033       1      24 [.      19      42 ..      19      44 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-07
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggca 24
                +++RR  L++ + +aAA++l+g+a
  EHT99176.1 19 NMNRRRVLQTLGLGAAAMGLPGMA 42
                69********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2775.50
//
Query:       EHT99177.1  [L=200]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-14   51.8  11.9    8.3e-14   51.8  11.9    2.2  2  Ferric_reduct  Ferric reductase like transmembrane component
     0.0019   17.9   0.3     0.0034   17.1   0.1    1.5  2  DUF5058        Domain of unknown function (DUF5058)
  ------ inclusion threshold ------
       0.02   14.6   1.1       0.02   14.6   1.1    2.4  2  FtsK_4TM       4TM region of DNA translocase FtsK/SpoIIIE
       0.49   10.6  11.8       0.33   11.2   4.0    2.2  2  DUF1516        Protein of unknown function (DUF1516)


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8  11.9   1.9e-17   8.3e-14       2     124 ..      48     161 ..       8     161 .. 0.94
   2 ?   -1.7   0.2      0.68   3.1e+03      87     107 ..     178     195 ..     176     199 .. 0.55

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.9e-17
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklll.fHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilait 96 
                    G++al ll ++ll++       plt+l ++ ll+  +++lg+++f++a+lH + y+l +l  +  +   l ++l+++py +lG+l++++l++la+t
     EHT99177.1  48 GRMALKLLLATLLVS-------PLTRLIKQPLLIrTRRLLGIWTFFWASLHLTSYYLLELGIN--NIGLLGSELISRPYLTLGILSWFILLALAVT 134
                    788888888888888.......999*999998888*************************988..599999************************* PP

  Ferric_reduct  97 SlkfirrrlsyelFyylHhllyvaylll 124
                    S++ + r+l+ + +  lH l+y++++l+
     EHT99177.1 135 SFQRMQRKLG-KRWQTLHNLIYLVAILA 161
                    ******8888.*************9985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.68
  Ferric_reduct  87 lllliilaitSlkfirrrlsy 107
                    +++l++l++++   +r + + 
     EHT99177.1 178 IYALLALVLLA---WRYKKFI 195
                    55666666666...5544443 PP

>> DUF5058  Domain of unknown function (DUF5058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.98   4.4e+03      24      27 ..      26      29 ..       7      65 .. 0.60
   2 !   17.1   0.1   7.6e-07    0.0034     120     191 ..     118     184 ..     114     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.98
     DUF5058 24 lrka 27
                l++a
  EHT99177.1 26 LIMA 29
                2222 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 7.6e-07
     DUF5058 120 mtlgiigwllvvllftkklekvreklsskdkkllaiistaafiGlfsaliaseilksgtkgvvsliavvvsa 191
                 +tlgi++w+++ +l++ +++++++kl ++ ++l ++i  +a+++ + +l + +il+ +     ++i +++++
  EHT99177.1 118 LTLGILSWFILLALAVTSFQRMQRKLGKRWQTLHNLIYLVAILAPVHYLWSVKILSPQ-----PIIYALLAL 184
                 69**************************************************994433.....444444443 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.065   2.9e+02      64     108 ..      17      61 ..       9      76 .. 0.70
   2 ?   14.6   1.1   4.5e-06      0.02      45     109 ..     103     169 ..      98     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.065
    FtsK_4TM  64 lsawllvvlllawglrllrrkslerrllrllgalllllasaalfa 108
                 l+a+l+ v+l++++++   ++++++ + +++g + l l +a+l  
  EHT99177.1  17 LAAFLPLVYLIMAAMHGGLSADPAKDIQHFTGRMALKLLLATLLV 61 
                 678888888888888888777777776666666666666666554 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.5e-06
    FtsK_4TM  45 NwgGrvGAwladlllslfGlsawllvvlllawglrllrrkslerr..llrllgalllllasaalfal 109
                 N +G++G+ l    + ++G+ +w++ ++l+++ ++ + rk  +r+  l+ l++++ +l+ +  l ++
  EHT99177.1 103 NNIGLLGSELISRPYLTLGILSWFILLALAVTSFQRMQRKLGKRWqtLHNLIYLVAILAPVHYLWSV 169
                 889**********************************997433333377777777777666655555 PP

>> DUF1516  Protein of unknown function (DUF1516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.9      0.01        46       9      75 ..      20      86 ..      13      95 .. 0.75
   2 ?   11.2   4.0   7.3e-05      0.33       4      55 ..     121     169 ..     118     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.01
     DUF1516  9 vlliilfivalllyskgkskaakilhmilRlfyllilvtglvllirtfknspllyilKvllgllvIg 75
                +l ++ +i+a +    +++ a  i h + R+ + l+l+t lv  ++ + ++pll+  + llg+++ +
  EHT99177.1 20 FLPLVYLIMAAMHGGLSADPAKDIQHFTGRMALKLLLATLLVSPLTRLIKQPLLIRTRRLLGIWTFF 86
                445566666666555556677778889999999999999988877777799*************976 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.3e-05
     DUF1516   4 hilsWvlliilfivalllyskgkskaakilhmilRlfyllilvtglvllirt 55 
                  ilsW++l+ l ++++ ++++   k  k ++ +  l+yl+ ++  +  l+++
  EHT99177.1 121 GILSWFILLALAVTSFQRMQR---KLGKRWQTLHNLIYLVAILAPVHYLWSV 169
                 689******999999999888...******************9988777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1553.06
//
Query:       EHT99178.1  [L=150]
Description: 3-dehydroquinate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-60  201.9   0.0    3.3e-60  201.7   0.0    1.0  1  DHquinase_II  Dehydroquinase class II


Domain annotation for each model (and alignments):
>> DHquinase_II  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   0.0   1.9e-64   3.3e-60       2     137 ..       7     142 ..       6     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 1.9e-64
                   EEEEE-TTGGGTTTSTCCCC-SS-HHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHHCTTT.TEEEEE-GGGGGT-HHHHHHHHTSSS-EEEEE CS
  DHquinase_II   2 ilvlnGpNlnllgkrepeiygsetledieeelkekaeelgvelevfqsnhEgelidriqeakekvdgiviNpgaythtSvalrdalaaveipvvEvh 98 
                   il+lnGpNlnllg+repe yg+ tl++i ++l ++a++l+v+l+++qsn+E +lidri+e+k +vd i+iNp+a+thtSvalrdal av+ip++Evh
    EHT99178.1   7 ILLLNGPNLNLLGTREPEKYGDVTLDQIVSRLVQQADQLNVALSHLQSNAEYQLIDRIHETKGNVDYIIINPAAFTHTSVALRDALLAVDIPFIEVH 103
                   9************************************************************************************************ PP

                   SS-GGGS-GGGG--SSGGGSSEEEESSTTHHHHHHHHHH CS
  DHquinase_II  99 lsnvhaReefrhksvlsdvakgviaGlglegYelaleal 137
                   lsnvh+Re+fr++s++sdv++gvi+Glg++gY+ al+++
    EHT99178.1 104 LSNVHSREPFRQHSYFSDVSAGVICGLGADGYSWALQTA 142
                   ************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1224.89
//
Query:       EHT99179.1  [L=154]
Description: acetyl CoA carboxylase, BCCP subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-25   88.9   1.8    1.5e-25   88.8   0.4    1.7  2  Biotin_lipoyl    Biotin-requiring enzyme
    6.8e-06   25.8   0.3        0.1   12.5   0.0    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0023   17.9   1.0     0.0045   16.9   0.3    1.7  2  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
      0.012   15.5   1.4      0.024   14.6   0.2    2.0  2  GCV_H            Glycine cleavage H-protein
      0.073   11.9   0.6       0.35    9.7   0.6    1.9  1  YqfD             Putative stage IV sporulation protein YqfD


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.83     3e+03      10      25 ..      11      27 ..       8      30 .. 0.71
   2 !   88.8   0.4   4.2e-29   1.5e-25       3      73 .]      81     153 ..      79     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.83
                   EEEEE..ECSESSSTTC CS
  Biotin_lipoyl 10 esveeg.vvevlvkvGd 25
                   e+vee+ + e  +++G+
     EHT99179.1 11 ELVEESgISELEISEGE 27
                   66777778888777776 PP

  == domain 2  score: 88.8 bits;  conditional E-value: 4.2e-29
                    EEESSSEEEEEE...ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   3 iksPmiGesveeg..vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++sPm+G++++++   ++ +v+vG+kV+ag++l++veamKm+++iea+k+Gvvk ilv++G  ve +++l++i
     EHT99179.1  81 VRSPMVGTFYRTPspDAKAFVEVGQKVNAGDTLCIVEAMKMMNQIEADKSGVVKAILVESGHPVEFDEPLVVI 153
                    89********************************************************************997 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.8e-05       0.1      17      41 ..     100     124 ..      97     125 .. 0.83
   2 !   11.8   0.1   4.5e-05      0.16       4      33 ..     124     153 ..     123     154 .] 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
  Biotin_lipoyl_2  17 nVkdGqrVkaGdvLaelDsralqla 41 
                      +V+ Gq V+aGd+L + +  +  ++
       EHT99179.1 100 FVEVGQKVNAGDTLCIVEAMKMMNQ 124
                      6999**********99987776665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.5e-05
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      +I a+ sG+V++++V+ G  V+    L+++
       EHT99179.1 124 QIEADKSGVVKAILVESGHPVEFDEPLVVI 153
                      799******************987777766 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.51   1.8e+03      23      23 ..      54      54 ..      23      91 .. 0.61
   2 !   16.9   0.3   1.3e-06    0.0045      41      81 ..      96     137 ..      85     154 .] 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
      RnfC_N 23 k 23
                +
  EHT99179.1 54 Q 54
                2 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.3e-06
      RnfC_N  41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaie 81 
                  ak+ v+vg+kV+ G+ +   e+  ++ ++ a  sG Vkai 
  EHT99179.1  96 DAKAFVEVGQKVNAGDTLCIVEAmKMMNQIEADKSGVVKAIL 137
                 5899************9888777556999***********95 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.54   1.9e+03      56      72 ..      64      81 ..      48      83 .. 0.64
   2 ?   14.6   0.2   6.6e-06     0.024      40      72 ..     102     134 ..      98     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.54
                ESS-EEE.EE-SSSEEEE CS
       GCV_H 56 svKaase.vyapvsGevv 72
                 v a++e  +a++sG++v
  EHT99179.1 64 PVAAVAEaAPAEISGHIV 81
                344444314789999998 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.6e-06
                 -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEE CS
       GCV_H  40 evgtkvkkgeslaavEsvKaasevyapvsGevv 72 
                 evg+kv++g++l +vE+ K+  ++ a+ sG v 
  EHT99179.1 102 EVGQKVNAGDTLCIVEAMKMMNQIEADKSGVVK 134
                 89****************************986 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.6   9.6e-05      0.35     181     206 ..     119     144 ..      97     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.6e-05
        YqfD 181 kdepcnivAkkdGvItkvivesGepl 206
                  + +++i A+k+Gv++ ++vesG+p+
  EHT99179.1 119 MKMMNQIEADKSGVVKAILVESGHPV 144
                 45588999***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1255.56
//
Query:       EHT99180.1  [L=449]
Description: acetyl-CoA carboxylase, biotin carboxylase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-85  284.9   0.0    5.1e-85  284.3   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    8.1e-44  148.7   0.2      2e-43  147.4   0.0    1.8  2  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    5.5e-38  129.4   0.0    1.1e-37  128.4   0.0    1.6  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    8.3e-09   35.3   0.0      2e-08   34.0   0.0    1.6  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    8.6e-08   32.4   0.0    1.5e-07   31.6   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
    9.1e-08   31.9   0.0    1.7e-07   31.0   0.0    1.4  1  ATP-grasp        ATP-grasp domain
     0.0013   18.6   0.0     0.0022   17.8   0.0    1.4  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
     0.0053   16.4   0.0      0.042   13.4   0.0    2.2  1  RimK             RimK-like ATP-grasp domain
  ------ inclusion threshold ------
      0.016   14.8   0.1      0.069   12.7   0.0    2.2  3  ATP-grasp_4      ATP-grasp domain
        0.1   11.8   0.1       0.23   10.7   0.0    1.5  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.3   0.0   2.8e-88   5.1e-85       1     210 [.     115     323 ..     115     324 .. 0.99

  Alignments for each domain:
  == domain 1  score: 284.3 bits;  conditional E-value: 2.8e-88
                  SHHHHHHHHHHTT-BBSSEECSS.BSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEE CS
  CPSase_L_D2   1 Dkesakealkkinvpvvpssaap.vetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEv 97 
                  Dk+sa +a++k++vp+vp+s++  ++++e++ a+ak+igyPviika+ g+GG+Gmrv+r++++l+++++++ aeakaaf n++v++ek+l++p++iE+
   EHT99180.1 115 DKVSAITAMNKAGVPTVPGSDGSlTDDMEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNNDMVYMEKYLENPRHIEI 212
                  99*******************99799************************************************************************ PP

                  EEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--H CS
  CPSase_L_D2  98 evlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldl 195
                  +vl+D +gn+i+++er++s+q+r+qkv+e+AP++ +t+e r+ ++e++ k++ ++g++gagt+efl++  ++e+y+iE+NtR++ve++++e++TG+dl
   EHT99180.1 213 QVLADGQGNAIYLGERDCSMQRRHQKVVEEAPAPGITPELRSFIGERCTKACIDIGYRGAGTFEFLYE--NGEFYFIEMNTRIQVEHPVTEMITGVDL 308
                  ********************************************************************..6*************************** PP

                  HHHHHHHHTT--GCG CS
  CPSase_L_D2 196 vkeaakialgekLee 210
                  +ke+++ia+g++L+ 
   EHT99180.1 309 IKEQLRIAAGQPLSI 323
                  ************985 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.0   1.1e-46     2e-43       1     110 []       1     110 [.       1     110 [. 0.98
   2 ?   -2.7   0.0       4.9   8.8e+03      43      64 ..     185     207 ..     168     242 .. 0.50

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 1.1e-46
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +++k++ianrGeiA+ri+ra++elgi+tvav+s++d++ +hv +ade+v++gpa++ +sYlni ++++aa+ +ga a+hpGyGflsEna+fae+ve
     EHT99180.1   1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEITGAVAIHPGYGFLSENADFAEQVE 96 
                    578********************************************************************************************* PP

                    HTT-EESSS-HHHH CS
  Biotin_carb_N  97 eagivfiGPsaeal 110
                    ++g++f+GP+a+++
     EHT99180.1  97 RSGFIFVGPKADTI 110
                    **********9876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.9
                    HHSSEEEEEE.SSTTCCGGG-HH CS
  Biotin_carb_N  43 readeavelg.pasasesYlnie 64 
                    ++a+++   + +    e+Yl+  
     EHT99180.1 185 TKAEAKAAFNnDMVYMEKYLENP 207
                    33333333331222344555444 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   6.4e-41   1.1e-37       1     107 [.     336     441 ..     336     442 .. 0.99

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 6.4e-41
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeef 96 
                    e+RinaEdp + flps+Gk+t+++ p+g gvR++s++++g++v+pyyDs+++Kli++getr+ a+ar+++aLael i+G+ktnie+  +i++de+f
     EHT99180.1 336 ECRINAEDPVT-FLPSPGKITRFHAPGGFGVRWESHIYAGYSVPPYYDSMIGKLITYGETRDIAIARMKNALAELIIDGIKTNIELQMKIMSDENF 430
                    8*********9.************************************************************************************ PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    ++g +++++le
     EHT99180.1 431 QHGGTNIHYLE 441
                    *********98 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.1e-11     2e-08      25     174 ..     142     291 ..     123     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.1e-11
                      -HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHH......HHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS CS
  Dala_Dala_lig_C  25 kellekveeelgypvfVKpareGSSvGvskveseeelkeaie......eafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfy 111
                       e  ++  +++gypv++K++  G   G+  v+s ++l++ i+      +a+  +  v +E+++ + r ie+ vl +++ ++  +ge+  + +  
       EHT99180.1 142 MEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINmtkaeaKAAFNNDMVYMEKYLeNPRHIEIQVLADGQGNAIYLGERDCSMQ-- 233
                      355678999****************************998863322223444456799*****899********************987653.. PP

                      -HHHHHC.TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 112 dyeakysddkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                      + ++k +      e pa  +++e ++ i e   ka   ++ rG +   f+++ +ge+++ E+Nt
       EHT99180.1 234 RRHQKVV-----EEAPApGITPELRSFIGERCTKACIDIGYRGAGTFEFLYE-NGEFYFIEMNT 291
                      4555554.....3344427999**************************9987.9*********9 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   8.2e-11   1.5e-07       2     159 ..     114     294 ..     113     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 8.2e-11
                  TSHHHHHHHHTTT.S--.-...........-EESS--.....SSSEEEEESS-------B--SS--TTE...................EEEE---S.E CS
  ATP-grasp_3   2 sdKlktykkLkeagvkv.P.......tkleaeeleee.....ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieG.k 73 
                   dK+    ++++agv++ P       +   ++e +++      +++++K + G+gg ++rvv+ ++++e++i++++             + +++e  +
   EHT99180.1 114 GDKVSAITAMNKAGVPTvPgsdgsltD---DMEKNRAfakriGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKaeakaafnndmvYMEKYLENpR 208
                  69999999*****99853799985552...333333344455*******************************99999********987889999648 PP

                  EEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----H.HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3  74 plSvsllsdgekvlvlavnrqliekaekefvyaGnvtpietel.keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRlt 159
                  ++ +++l+dg+ + +    r    +++++ v     +p  t + ++ + e + +++ ++ g +G    +++++++e y+iE N R++
   EHT99180.1 209 HIEIQVLADGQGNAIYLGERDCSMQRRHQKVVEEAPAPGITPElRSFIGERCTKACIDI-GYRGAGTFEFLYENGEFYFIEMNTRIQ 294
                  9*********99988888888777777778888888888777648888899********.*************************98 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   9.4e-11   1.7e-07      14     159 ..     139     292 ..     124     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 9.4e-11
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE-.-EEEEEEE.. CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafy.pvvetvqe.. 101
                  ++ e+ +++a+++g+pv++K + +g  G+G  vvrs++dleq ++++        ++  v++E++ +  + + + v  + +G+   + +    +q+  
  EHT99180.1 139 TDDMEKNRAFAKRIGYPVIIK-ASGGGGGRGMRVVRSDKDLEQSINMTkaeakaafNNDMVYMEKYLENPRHIEIQVLADGQGNAIYLgERDCSMQRrh 236
                 5677788999***********.89999****************99999899999999999***********99999999****7444323333344400 PP

                 TTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 102 dgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                 ++++++  ap  ++ +    + e + k++  +g+ G  ++E+ +  +ge ++ E+  R
  EHT99180.1 237 QKVVEEAPAPG-ITPELRSFIGERCTKACIDIGYRGAGTFEFLYE-NGEFYFIEMNTR 292
                 44444444444.67788899999999**************97665.999999888777 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0022       9     103 ..     122     219 ..     114     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
                 HHHHTT--B...--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEECTT CS
      GARS_A   9 llkkagipt...aeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvdgk 103
                  ++kag+pt   ++ + ++d+e+ +++ ++ + ++ ++Ka+g  +g+g+ v++s ++  + ++    + k    ++ v +E++le    + +++l dg+
  EHT99180.1 122 AMNKAGVPTvpgSDGSLTDDMEKNRAFAKRIGYPV-IIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNNDMVYMEKYLENpRHIEIQVLADGQ 219
                 56677766522167888999***************.****************9999999998877777777777889999*999862456777777776 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.4e-05     0.042       3      93 ..     115     215 ..     113     315 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
                 -HHHHHHHHHHTT...-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHHGGG--.........EEEEE--SS-SEE CS
        RimK   3 dKlkslklLakak...ikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlealkeai.........lvqeyieeaened 89 
                 dK+ ++  + ka+   ++     l+ d e+ +++ ++i  + Pv++K + g  G ++ + +  ++l+q ++ +k++           + +y+e+    +
  EHT99180.1 115 DKVSAITAMNKAGvptVPGSDGSLTDDMEKNRAFAKRI--GYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAkaafnndmvYMEKYLENPRHIE 211
                 67777777778773334445678999************..69*************************99998554433332322234555666555555 PP

                 EEEE CS
        RimK  90 iRvl 93 
                 i vl
  EHT99180.1 212 IQVL 215
                 5544 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.7   8.4e+03     111     132 ..      11      32 ..       4      35 .. 0.71
   2 ?   12.7   0.0   3.9e-05     0.069       1      56 [.     152     204 ..     152     225 .. 0.82
   3 ?   -4.1   0.0       5.7     1e+04     139     150 ..     280     291 ..     276     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.7
  ATP-grasp_4 111 ealeellkevnallglknfpvH 132
                   +++  + ++ ++lg+k ++vH
   EHT99180.1  11 GEIALRILRACKELGIKTVAVH 32 
                  5566666677789999999999 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.9e-05
  ATP-grasp_4   1 islPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesfl 56 
                  i +Pv+iK s g + +G++++++++++++ ++ +++e   ak+ +++++v  e++l
   EHT99180.1 152 IGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAE---AKAAFNNDMVYMEKYL 204
                  579**************************99999877...5666666666555544 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 5.7
  ATP-grasp_4 139 edgkiipiEvnp 150
                  e+g+ + iE+n 
   EHT99180.1 280 ENGEFYFIEMNT 291
                  678999999997 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.23      17      85 ..     111     178 ..      97     201 .. 0.71
   2 ?   -3.8   0.0       3.2   5.8e+03     253     268 ..     280     295 ..     277     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
  ATPgrasp_ST  17 plvddKlkfkelalraglk.vpkllgvikeq...aeiseleafvkeleegvviKpakgsgGkGilviteredq 85 
                   l+ dK+   + +++ag++ vp        +   +++++ +af k++   v+iK+  g gG+G++v+ +++d 
   EHT99180.1 111 RLMGDKVSAITAMNKAGVPtVPGSD-----GsltDDMEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDL 178
                  5777888666666777765255522.....23448899999999999555*****************764442 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.2
  ATPgrasp_ST 253 eekgplllElNarpgl 268
                  e+++ + +E+N+r  +
   EHT99180.1 280 ENGEFYFIEMNTRIQV 295
                  6777888999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3700.77
//
Query:       EHT99181.1  [L=80]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-25   88.4   1.2    2.6e-25   88.2   1.2    1.0  1  DUF997    Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   1.2   1.5e-29   2.6e-25       1      76 []       7      78 ..       7      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 1.5e-29
      DUF997  1 qankEalltllltllyflwwllfaYglgskeveeyyilglPlWfflscillpilfivlvillvkfvFkdipLddee 76
                qa+kEa+++l+ltl+ +++w + a+  g++     +i+glP Wf+lsci+ p+lfi+l++l+v+  F++++L++e+
  EHT99181.1  7 QAHKEARWSLYLTLAWLAVWGISAWSGGDAV----GITGLPRWFELSCIFAPLLFIFLCWLMVRTRFREMSLEEED 78
                9*************************99666....**************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 666.31
//
Query:       EHT99182.1  [L=481]
Description: pantothenate:sodium symporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-124  414.2  26.4   6.7e-124  413.8  26.4    1.1  1  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.8  26.4  3.7e-128  6.7e-124       1     406 []      36     432 ..      36     432 .. 1.00

  Alignments for each domain:
  == domain 1  score: 413.8 bits;  conditional E-value: 3.7e-128
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlr....nagalTlpdylskRfkgkrilvylsalslll 95 
                 yfl++rs++gfvl+++++ ++isa+sf+G++Ga++++Gl++vll++ ++++v+l+l++l+++++    + +a+Tl+d+l +R+++   lv+l++lsll+
  EHT99182.1  36 YFLGSRSMGGFVLAMTITTTYISASSFIGGPGAAYKYGLGWVLLAMVQVPAVWLSLGVLGKKFAilarKHNAVTLNDMLYARYGSTL-LVVLASLSLLV 133
                 9**************************************************************99999****************998.*********** PP

         SSF  96 vitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltpds 194
                 +++ +++v+++gga+l+e+a G+ y t++l++++++alYt++GG++A+v++d +q+++ml+g+++ll+  ++++Gg++++vekl +++p   +ll p++
  EHT99182.1 134 AFVGAMAVQFIGGARLLETAAGIPYDTGLLIFGGTIALYTAFGGFRASVLNDAMQGIVMLIGTFLLLFAIIHHAGGIHTAVEKLHAIDP---KLLSPEG 229
                 *****************************************************************************************...99***** PP

         SSF 195 lkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnll 293
                   ++  p++  s+ +++++Gv+glph++vR++++kd+ka++++++ +tiv++++++g        ++laga+++a+ ++++v+++++p+L++ +lp+l 
  EHT99182.1 230 PGDIITPTFLSSFIVLVCFGVIGLPHTAVRCISYKDSKAVHRAIVLGTIVVVVLMLG--------MHLAGALGRAILPDLTVPDRVIPTLMITVLPPLA 320
                 *********************************************************........9********************************* PP

         SSF 294 aGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalfwk 392
                 aGl+la+++Aaimst++++ll+as++++kDlY ++ +++ ++e +l  +s  ++  ++++++++a++++++ +++l+ laf+gl++++l+ ++l+l+w+
  EHT99182.1 321 AGLFLAAPMAAIMSTINAQLLQASATLVKDLYLRLAPQQLDNEPRLRMLSGTVTFALGVVLLFVAWHPPDM-IIWLNLLAFGGLEAVFLWPLVLGLYWE 418
                 ***********************************************************************.*************************** PP

         SSF 393 rvneqGAlagliiG 406
                 r+n+ GAl+g+++G
  EHT99182.1 419 RANAAGALSGMVVG 432
                 ************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 3863.87
//
Query:       EHT99183.1  [L=294]
Description: methylase for 50S ribosomal subunit protein L11 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-103  346.0   0.0     2e-103  345.9   0.0    1.0  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    1.8e-09   37.6   0.0    2.7e-09   37.0   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    2.2e-09   37.1   0.0    3.3e-09   36.5   0.0    1.2  1  MTS              Methyltransferase small domain
    4.2e-08   33.8   0.0    8.8e-08   32.8   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    1.3e-06   28.4   0.0    2.2e-06   27.6   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    3.9e-06   27.4   0.0    1.1e-05   25.9   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    4.2e-06   27.4   0.0    9.1e-06   26.3   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    9.8e-05   22.2   0.0    0.00016   21.5   0.0    1.2  1  Met_10           Met-10+ like-protein
    0.00012   21.7   0.0    0.00028   20.6   0.0    1.5  2  Cons_hypoth95    Conserved hypothetical protein 95
    0.00024   20.9   0.0     0.0003   20.6   0.0    1.2  1  N6_N4_Mtase      DNA methylase
    0.00025   21.0   0.0     0.0004   20.4   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
    0.00046   20.2   0.0    0.00072   19.6   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.002   17.1   0.0     0.0031   16.5   0.0    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
     0.0062   16.3   0.0     0.0099   15.6   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0079   15.9   1.0      0.035   13.8   1.0    1.9  1  UPF0020          Putative RNA methylase family UPF0020
  ------ inclusion threshold ------
      0.038   13.3   0.0      0.057   12.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.092   12.3   0.0       0.14   11.7   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.9   0.0  1.9e-106    2e-103       2     295 ..       3     292 ..       2     293 .. 0.99

  Alignments for each domain:
  == domain 1  score: 345.9 bits;  conditional E-value: 1.9e-106
        PrmA   2 wlelsvttkkeaeeavsniLeelgakgvaiedsklleeedifepaleeeelkeevkvkalfkeeteakeliaqlkeselglekgkvkveeveeedWaee 100
                 w++++++ + +++ea+s++L+e+ga +v+++d++   +++++ep ++e++l+ +++v +lf++e++++ +ia+l+++ l  e+++ k+e++e++dW++e
  EHT99183.1   3 WIQIKINSSGANAEALSDALMETGAVSVTFQDTH---DTPVYEPLPGETRLWGDTDVIGLFDAESDMEGVIAELSQHPLLGENFRQKIEQIEDKDWERE 98 
                 **********************************...************************************************************** PP

        PrmA 101 wkkyykPvrigerltivpsweeypeeeeelvieldpGlAFGTGtHpTTklclealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkv 199
                 w+++++P+r+gerl+i+psw+++p+ +++++++ldpGlAFGTGtHpTT+lcl +l+ l  +g++v+D+G+GSGiLaiaa+kLga++++++DiD++A+++
  EHT99183.1  99 WMENFHPMRFGERLWICPSWRDVPD-PNAVNVMLDPGLAFGTGTHPTTSLCLTWLDGLDLNGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQA 196
                 ************************9.************************************************************************* PP

        PrmA 200 akeNaelNkveaklevalseellkeekadvivaNILaevlielaedikklvkeggllilSGilkekaeevaealeqgfeleevlereeWvaivakk 295
                 +++Nae+N+v+++l+++l+++++++ +adv+vaNILa +l ela+ i  l k+gg+l lSG+l+++ae+v+ea++ +f l+ v+ +eeW++i++ k
  EHT99183.1 197 SRDNAERNRVADRLSLYLPHQQPENLQADVVVANILAGPLRELAPLIRVLPKPGGHLGLSGVLESQAESVCEAYAMHFALDPVAVKEEWCRITGVK 292
                 ********************************************************************************************9876 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   2.6e-12   2.7e-09       4      58 ..     159     212 ..     156     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.6e-12
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveF 58 
                      g++v+D GCG+G l++++  +lg  a+ +GiDi+++ai+ +r na+++ +  ++++
       EHT99183.1 159 GKTVIDFGCGSGILAIAAL-KLG-AAQAIGIDIDPQAIQASRDNAERNRVAdRLSL 212
                      789*************999.877.5*********************9988644444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   3.1e-12   3.3e-09      19     104 ..     144     230 ..     127     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3.1e-12
                 HHHHHHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE- CS
         MTS  19 GsklLletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsN 104
                  ++l l+ l+      ++v+D+GcG G+l++a++k     +   +d+d +A+++++ n+e+n+++ ++      ++ e+ + d++v N
  EHT99183.1 144 TTSLCLTWLDGLdlNGKTVIDFGCGSGILAIAALKLGAA-QAIGIDIDPQAIQASRDNAERNRVADRLSLYLPHQQPENLQADVVVAN 230
                 566667777766656778***************998777.56789*******************977777777788888889999988 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   8.3e-11   8.8e-08       1      70 [.     162     229 ..     162     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 8.3e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvs 70 
                      v+d+GcG+G l++a++k  g+a+ +g+Di++++++a r +ae++++  ++     ++ p e+ + D+vv+
       EHT99183.1 162 VIDFGCGSGILAIAALKL-GAAQAIGIDIDPQAIQASRDNAERNRVADRLSLYLPHQQP-ENLQADVVVA 229
                      89**************99.69********************987763333222223333.3446777776 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.1e-09   2.2e-06      22     123 ..     158     261 ..     135     286 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.1e-09
  Methyltransf_23  22 aggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllk 110
                       g+ v+d+GcG+Gil+  + + g+ + +g+D++p+a++  +      + a   + +    ++++ + d++v++ + + ++ ++ l+r + +   
       EHT99183.1 158 NGKTVIDFGCGSGILAIAALKLGAaQAIGIDIDPQAIQASRdnaeRNRVADRLSLYLPHQQPENLQADVVVANILAGPLRELAPLIRVLPK--- 248
                      5789*************99999988**********99987777773333333333344555778899999999887777776666655555... PP

  Methyltransf_23 111 pgGylllseplas 123
                      pgG+l ls +l+s
       EHT99183.1 249 PGGHLGLSGVLES 261
                      7777766666555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.1e-08   1.1e-05       2      68 ..     164     230 ..     163     254 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-08
                      EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT.....-EEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfedn.....sfDlvvss 68 
                      d+GcG+G+la a  k g a+ +g+D++++++++++++a+++++      ad  +l ++ +     + D+vv++
       EHT99183.1 164 DFGCGSGILAIAALKLGaAQAIGIDIDPQAIQASRDNAERNRV------ADRLSLYLPHQqpenlQADVVVAN 230
                      99********************************999999964......443333222221112466666665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   8.6e-09   9.1e-06       2      75 ..     164     232 ..     163     253 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 8.6e-09
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnv 75 
                      ++GcG+G l+ a l+    ++ +g+Di+p+ai++ +    +++  +   + l +++    +++ + D+vva+ +
       EHT99183.1 164 DFGCGSGILAIAALKL-GAAQAIGIDIDPQAIQASRDNAERNRVADRLSLYLPHQQ----PENLQADVVVANIL 232
                      9**********99999.899999*********444444444444343444444444....44449****99755 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.5e-07   0.00016     100     157 ..     158     214 ..     155     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-07
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEE CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpil 157
                 +g++V+d   G G +ai++ k++ a+  ++id++P++++  ++n ++N+v+++++ +l
  EHT99183.1 158 NGKTVIDFGCGSGILAIAALKLGAAQ-AIGIDIDPQAIQASRDNAERNRVADRLSLYL 214
                 5899*****************99888.78**********************9986554 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.3   4.5e+03     128     155 ..      65      92 ..      60     107 .. 0.66
   2 !   20.6   0.0   2.7e-07   0.00028      39      93 ..     155     210 ..     140     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
                    H.HHHHHHHHHTT-EEEEEEEEEEEECC CS
  Cons_hypoth95 128 lieevlelleekkllkenalvvveteke 155
                     +e v+++l ++ ll en    +e+ ++
     EHT99183.1  65 DMEGVIAELSQHPLLGENFRQKIEQIED 92 
                    4578888888888888887666665444 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.7e-07
                    C.HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTT CS
  Cons_hypoth95  39 e.iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeet 93 
                      ++g++v+D  +GsG l++ Al  ga++a+ ++ d++a+++ ++n e+ ++ ++ 
     EHT99183.1 155 LdLNGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRDNAERNRVADRL 210
                    34899******************************************998877655 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.9e-07    0.0003     191     229 ..     158     197 ..      84     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.9e-07
                  TT-EEEETT-TTTHHHHHHHHTT-E.EEEEESSHHHHHHH CS
  N6_N4_Mtase 191 kgdivlDpFaGSGtTavaakelgrk.fiGieieeeyvela 229
                  +g++v+D+ +GSG  a+aa++lg   +iGi+i++++++++
   EHT99183.1 158 NGKTVIDFGCGSGILAIAALKLGAAqAIGIDIDPQAIQAS 197
                  699*******************9744*********99976 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.8e-07    0.0004      14      71 ..     158     214 ..     153     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.8e-07
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrl 71 
                      +g++v+D G+  g+l+i+++k g a ++i +Di +++++++++n+e++++ d+++++l
       EHT99183.1 158 NGKTVIDFGCGSGILAIAALKLGAA-QAIGIDIDPQAIQASRDNAERNRVADRLSLYL 214
                      4789****************98876.89***********************9998877 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.9e-07   0.00072      26      81 ..     159     209 ..     148     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.9e-07
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkr 81 
                       +tv+D+G+G g L+ +          + +gid+  + ++++++ ae+ +  +++r
       EHT99183.1 159 GKTVIDFGCGSGILAIAALK---LGAAQAIGIDIDPQAIQASRDNAERNR--VADR 209
                      589************98887...6799****************9999877..5555 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.9e-06    0.0031     113     149 ..     156     192 ..     152     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.9e-06
                     --TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HH CS
  Methyltransf_9 113 dlkgrtildvGcgnGyhlwrmvgegaklvvGidPsel 149
                     dl+g+t++d Gcg+G      +  ga++++Gid   +
      EHT99183.1 156 DLNGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQ 192
                     89****************************9874433 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.4e-06    0.0099      62     123 ..     145     206 ..     135     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.4e-06
                 HHHHHHHTT.--.TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTT CS
        PCMT  62 valalelle.lk.kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldl 123
                  +l+l +l+ l+ +g+ v++ G+GsG+l+    +l g+   +++i+  ++ +++++ n +++ +
  EHT99183.1 145 TSLCLTWLDgLDlNGKTVIDFGCGSGILAIAALKL-GAAQ-AIGIDIDPQAIQASRDNAERNRV 206
                 56789999997646899**********98665555.4443.6***************9998765 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.0   3.3e-05     0.035      76     128 ..     181     230 ..     146     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
                 H--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE- CS
     UPF0020  76 elklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtn 128
                  ++ +g+D+d++++q++r+Nae+ +v+d+ +++    +  + ++ + dv+v+n
  EHT99183.1 181 AAQAIGIDIDPQAIQASRDNAERNRVADRLSLYLPHQQ--P-ENLQADVVVAN 230
                 45679***********************9998875444..3.45567778777 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.4e-05     0.057      58     122 ..     155     218 ..     148     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
                 TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GG CS
        CMAS  58 lelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldye 122
                 l+l +G+t++d GcG G l++ a +   ++ +g+ +  +  + ++++ ++  ++++ +++l + +
  EHT99183.1 155 LDL-NGKTVIDFGCGSGILAIAALKLGAAQAIGIDIDPQAIQASRDNAERNRVADRLSLYLPHQQ 218
                 555.59********************999*******99999999999999988888887776554 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.14       2      53 ..     160     212 ..     159     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
  Methyltransf_15   2 rvilDlfsGaGGnviq.falvfekviaieinleklacaqhNaevYgvsdkitl 53 
                      ++++D  +G+G  +i+ ++l   + i+i+i+++ ++ +  Nae   v+d++ l
       EHT99183.1 160 KTVIDFGCGSGILAIAaLKLGAAQAIGIDIDPQAIQASRDNAERNRVADRLSL 212
                      5799*******9988625666899********************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2304.61
//
Query:       EHT99184.1  [L=321]
Description: tRNA-dihydrouridine synthase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-114  382.1   0.0   1.9e-114  381.9   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
    7.3e-06   25.6   0.1     0.0023   17.5   0.1    1.9  2  His_biosynth  Histidine biosynthesis protein
     0.0013   18.0   0.0       0.27   10.4   0.0    2.1  2  DHO_dh        Dihydroorotate dehydrogenase
     0.0088   15.4   0.4        1.2    8.3   0.0    2.6  3  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
     0.0095   15.4   1.0      0.017   14.5   0.1    1.8  2  NMO           Nitronate monooxygenase
  ------ inclusion threshold ------
      0.012   14.8   0.2      0.043   13.0   0.0    2.0  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer
      0.033   13.5   1.1       0.72    9.1   0.0    2.3  2  ThiG          Thiazole biosynthesis protein ThiG
      0.063   12.7   0.0       0.16   11.4   0.0    1.6  1  PEP_mutase    Phosphoenolpyruvate phosphomutase
      0.063   12.3   0.7        2.1    7.3   0.0    2.2  2  IMPDH         IMP dehydrogenase / GMP reductase domain
       0.09   12.3   0.0       0.33   10.5   0.0    1.9  2  MR_MLE_C      Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.9   0.0  1.1e-117  1.9e-114       2     307 ..      14     318 ..      12     321 .] 0.98

  Alignments for each domain:
  == domain 1  score: 381.9 bits;  conditional E-value: 1.1e-117
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEG CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaG 100
                  aPmag+td+pfR+l+ e+ga+ ++v+em++++  v++++++++++ +++e+  +avQ++g+dp ++a+aA++++d ga+ Id+N+GCP+kkv+r++aG
  EHT99184.1  14 AAPMAGITDRPFRTLCHEMGAG-MAVSEMLSSNPEVWASDKSRLRMVHSDEPGIRAVQIAGCDPSEMAQAARINVDAGAQVIDINMGCPAKKVNRKMAG 111
                 57********************.**************************************************************************** PP

                 GGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHH CS
         Dus 101 aaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaq 199
                 +aLl+ p +v++i++avv+av++Pvt+kir+g+d e++n++ +a+ +e++G+qalt+HgRtra+ ++g a++++I+ vkq+vsip+iaNGdI+d+++a+
  EHT99184.1 112 SALLQYPTVVESILSAVVNAVDVPVTLKIRTGWDPENRNCVAIAQLAERCGIQALTIHGRTRACLFNGDAEYDSIRTVKQSVSIPIIANGDITDPHKAR 210
                 *************************************************************************************************** PP

                 HHHHHH--SEEEESCHHCCSTTHHHH.HHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHCC CS
         Dus 200 aileetGadgvmigrgalgnPwlfae.stavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkkaaelrreleevsdkeea 297
                 a+l++tGad++migr+a+g+Pw+f+e +++++tge     plae+++++ +h+++l++++g +kg+r +rkh++wyl++++ ++++rr++++++d +e+
  EHT99184.1 211 AVLDYTGADALMIGRAAQGRPWIFREiQHYLDTGELLAPLPLAEVKRLLVSHIRELHDFYGPGKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ 309
                 *************************************************************************************************** PP

                 HHCHH.HHCC CS
         Dus 298 lenleeaalk 307
                 le le a+++
  EHT99184.1 310 LEALE-AYFE 318
                 *9997.5554 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.3e-06    0.0023      74     222 ..      83     226 ..      77     232 .. 0.83
   2 !   13.6   0.0   1.9e-05     0.033      59     118 ..     180     240 ..     173     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
                   SEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETT CS
  His_biosynth  74 ipvqvGGGIrsledveelleagadkviigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelgageilltdid 170
                   + + v+ G + ++         +++ + g+a ++ p +++++++     ++v a+D+     + i+++   ++ + v +a+ +e+ g++++ ++   
    EHT99184.1  83 ARINVDAGAQVIDINMGCPAKKVNRKMAGSALLQYPTVVESILS-----AVVNAVDVPVT--LKIRTGWDPENRNCVAIAQLAERCGIQALTIHGRT 172
                   56667777766664455556679999*****************9.....47779998766..56666666669************************ PP

                   TTTTSS---H.HHHHHHHHHHSSEEEEESS--SHHHHHHHH.HTTCSEEEESHH CS
  His_biosynth 171 rdGtlsGpdl.eltkelaeavkipviasGGvgsledlkelk.segvdavivgsa 222
                   r    +G    + +++++++v+ip+ia G ++++   +++   +g+da+++g+a
    EHT99184.1 173 RACLFNGDAEyDSIRTVKQSVSIPIIANGDITDPHKARAVLdYTGADALMIGRA 226
                   ******9765489************************999966777*****998 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.9e-05
                   HHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHH.CT-SEEEESHHHHH-THHHHHHHHH CS
  His_biosynth  59 eanldlveeiaeevfipvqvGGGIrsledveelle.agadkviigtaavknpelikelaek 118
                   +a++d ++++ ++v+ip+   G I +  +++++l+  gad ++ig aa  +p +++e+ + 
    EHT99184.1 180 DAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDyTGADALMIGRAAQGRPWIFREIQHY 240
                   678899****************************9668*************9999998765 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00015      0.27     123     195 ..      89     168 ..      64     177 .. 0.68
   2 !    5.6   0.0    0.0043       7.8     233     291 ..     185     241 ..     180     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
                 GGESEEEEES-SCTCCTSCC......CGCHHHHHHHHHHHHHHHHSSEEEEEE-S..SSSHHHHHHHHHHHHHHTECEEEE CS
      DHO_dh 123 pfadilelNvSsPntpglrd......lqekeelkaillkvvkevskvpvlvKlaP..dltdeekkdiadvllelkldgiiv 195
                   a+++ +N+ +P  +  r+      lq+ + +++il++vv++v +vpv  K+    d  + +  +ia+++ +++++++ +
  EHT99184.1  89 AGAQVIDINMGCPAKKVNRKmagsalLQYPTVVESILSAVVNAV-DVPVTLKIRTgwDPENRNCVAIAQLAERCGIQALTI 168
                 6789*********7665555111111455555555555555555.5*******7522556666778888888999988775 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0043
                 HHHHHHHHTTT.S-EEEESS--SHHHHHHHHH.HTECEEEESHHHHHHGTCHHHHHHHHH CS
      DHO_dh 233 virelykrlkkeipiIgvGGiesgeDalekie.aGAslvqvytalvfegpkiakkikkel 291
                  ir++++ ++  ipiI+ G i+  + a   +   GA ++ ++ a     p+i+++i++ l
  EHT99184.1 185 SIRTVKQSVS--IPIIANGDITDPHKARAVLDyTGADALMIGRAA-QGRPWIFREIQHYL 241
                 6999999999..*********988877776643799999999998.77889999988765 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0076        14       7      26 ..       2      21 ..       1      62 [. 0.90
   2 ?   -2.6   0.1       1.4   2.5e+03     155     171 ..      80      96 ..      77      98 .. 0.87
   3 !    8.3   0.0   0.00068       1.2     281     336 ..     182     238 ..     139     243 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0076
                  EETTEEESSSEEE----S-T CS
  Oxidored_FMN  7 kignmtLknRivmapmtrlr 26
                   ign +L+nR++ apm  + 
    EHT99184.1  2 RIGNLQLRNRLIAAPMAGIT 21
                  79**************8765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                   HHHHHHHHHTT-SEEEE CS
  Oxidored_FMN 155 veAAkraieAgfDgVei 171
                   ++AA+  ++Ag+ +++i
    EHT99184.1  80 AQAARINVDAGAQVIDI 96 
                   799**********9998 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00068
                   T.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHH CS
  Oxidored_FMN 281 e.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklk 336
                   e      vk+ ++ p+i+ g i+d++ka  ++    ad   +gR+    p + + ++
    EHT99184.1 182 EyDSIRTVKQSVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238
                   33567899*************************999999999998766666655555 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.74   1.3e+03     183     196 ..     123     136 ..      68     138 .. 0.70
   2 !   14.5   0.1   9.3e-06     0.017     184     223 ..     185     225 ..     151     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.74
         NMO 183 aLvpqvldavdiPv 196
                 +++  v++avd+Pv
  EHT99184.1 123 SILSAVVNAVDVPV 136
                 45556666666766 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.3e-06
         NMO 184 LvpqvldavdiPviAaGGiidrrgvaaaLal.GAsgvqigt 223
                  + +v++ v+iP+iA G i d +   a+L + GA +  ig 
  EHT99184.1 185 SIRTVKQSVSIPIIANGDITDPHKARAVLDYtGADALMIGR 225
                 577999***********************8659*9999985 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   2.9e+03       3      19 ..      78      97 ..      76     110 .. 0.67
   2 ?   -1.9   0.0      0.89   1.6e+03      24      44 ..     125     145 ..     101     177 .. 0.63
   3 ?   13.0   0.0   2.4e-05     0.043     119     176 ..     167     227 ..     152     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                HHHHHHHH...HT-SEEEEE CS
        NanE  3 amakaaeq...aGavgirie 19
                 ma+aa++   aGa  i i+
  EHT99184.1 78 EMAQAARInvdAGAQVIDIN 97
                57777754222677766665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.89
                 HHHHHTT--S-EEEE-B---T CS
        NanE  24 ikaikavvdlPiiGivkrdlp 44 
                 ++a+ ++vd+P+   ++  ++
  EHT99184.1 125 LSAVVNAVDVPVTLKIRTGWD 145
                 466777777776555554444 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.4e-05
                 TTTTSSTTS-..SS--HHHHHHHHHT.T--EEEES---SHHHHHHHHT.T--SEEEE-HHH CS
        NanE 119 tlsGytkeeek.aepDfalvkalsea.glkviaeGrintPekakkaie.iGvdavvvGsai 176
                 t+ G t       + +++ +++++++  + +ia+G i  P+ka+ +++ +G+da+++G a 
  EHT99184.1 167 TIHGRTRACLFnGDAEYDSIRTVKQSvSIPIIANGDITDPHKARAVLDyTGADALMIGRAA 227
                 666666665543678889999998763688****************9946********874 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.032        58     211     230 ..      74      93 ..      66     112 .. 0.81
   2 ?    9.1   0.0    0.0004      0.72     161     206 ..     180     226 ..     151     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.032
                 SSHHHHHHHHHHHHHHHHHH CS
        ThiG 211 kdpvamArafklaveaGrla 230
                  dp +mA+a +  v+aG + 
  EHT99184.1  74 CDPSEMAQAARINVDAGAQV 93 
                 49***************865 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0004
                 -S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHT.T-SEEEESHH CS
        ThiG 161 llnkealkiiieeakvPvivDAGigspsdaaqamel.Gadavllnta 206
                  ++   ++++ +++++P+i +  i  p +a +++++ Gada+++  a
  EHT99184.1 180 DAEYDSIRTVKQSVSIPIIANGDITDPHKARAVLDYtGADALMIGRA 226
                 556678999*************************9659****99766 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.9e-05      0.16      59     128 ..     123     188 ..     114     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.9e-05
  PEP_mutase  59 aavraiaevvslPlivDledGygespeevaetvrrliaaGvvgvniEDkkkndaerqll.dieefaekiaa 128
                 ++++a++++v++P+++ +++G+  + +++ +  + +++ G+ +++i  +     +r +l + +   + i++
  EHT99184.1 123 SILSAVVNAVDVPVTLKIRTGWDPENRNCVAIAQLAERCGIQALTIHGR-----TRACLfNGDAEYDSIRT 188
                 578899****************999999999999999******999877.....22222244444444444 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.021        37     156     210 ..      80     136 ..      51     139 .. 0.79
   2 ?    7.3   0.0    0.0012       2.1     136     237 ..     186     225 ..     175     230 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
                 HHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHH..HHCTCT-EE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
       IMPDH 156 aegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevae..aakkagvpv 210
                 a++a+  ++aga+++ + +G  +  + r +ag    q   v+e     +++  +vpv
  EHT99184.1  80 AQAARINVDAGAQVIDINMGCPAKKVNRKMAGSALLQYPTVVESILsaVVNAVDVPV 136
                 45667779*****************************99988865422556667776 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
                 HHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHH.TT-SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
       IMPDH 136 vkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAla.aGadav 233
                 ++++k+                                                               +  +p+ia G i+  ++    l   Gada+
  EHT99184.1 186 IRTVKQ---------------------------------------------------------------SVSIPIIANGDITDPHKARAVLDyTGADAL 221
                 444444...............................................................445666666666655554444432466666 PP

                 EESC CS
                 xxxx RF
       IMPDH 234 mlGs 237
                 m+G+
  EHT99184.1 222 MIGR 225
                 6665 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   2.2e+03     137     151 ..     150     164 ..     124     172 .. 0.80
   2 ?   10.5   0.0   0.00018      0.33      85     127 ..     181     223 ..     176     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTT-E CS
    MR_MLE_C 137 earkvaalaeafgvp 151
                 +++++a+lae  g++
  EHT99184.1 150 NCVAIAQLAERCGIQ 164
                 678888888888887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
                 THHHHHHHHHHHH.SSEEEESTTSSSHHHHHHHHHHTSESEEEE CS
    MR_MLE_C  85 ddleglaelrara.sipiaagEslysradfrelleagavdivqp 127
                 ++++++++++ ++ sipi+a+ ++++++ +r++l+  ++d++++
  EHT99184.1 181 AEYDSIRTVK-QSvSIPIIANGDITDPHKARAVLDYTGADALMI 223
                 4578889999.7789*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2358.02
//
Query:       EHT99185.1  [L=98]
Description: global DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-14   52.7   0.4    3.8e-14   52.2   0.4    1.3  1  HTH_8       Bacterial regulatory protein, Fis family
    0.00055   19.8   0.1     0.0011   18.8   0.1    1.5  1  Phage_NinH  Phage NinH protein
  ------ inclusion threshold ------
      0.026   14.7   0.2       0.03   14.5   0.2    1.1  1  DUF3333     Domain of unknown function (DUF3333)
       0.11   12.3   0.1       0.26   11.1   0.0    1.7  2  HTH_30      PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.4   8.5e-18   3.8e-14       2      42 .]      55      95 ..      54      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 8.5e-18
                HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8  2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42
                l+evE+ l+  +++ t+Gn+++AA + Gi+R tL++KLkkY
  EHT99185.1 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95
                79**************************************9 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.5e-07    0.0011      13      38 ..      68      93 ..      60      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-07
  Phage_NinH 13 vetyGnqtEvARrlkcsRatvRkYvr 38
                  t+Gnqt +A  +  +R+t+Rk ++
  EHT99185.1 68 QYTRGNQTRAALMMGINRGTLRKKLK 93
                359*******************9765 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   6.6e-06      0.03      67     119 ..      17      68 ..       3      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.6e-06
     DUF3333  67 eeskklatanyeklirdalkaklpeveerrekrelaelissgaayqlrdrvla 119
                 ++++++++  ++  +++alk+ + +++  ++ ++l+el+  +++  l d+v++
  EHT99185.1  17 NSQDQVTQKPLRDSVKQALKNYFAQLN-GQDVSDLYELVLAEVEQPLLDMVMQ 68 
                 45679999****************655.99*********************97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.83   3.7e+03      44      56 ..      44      56 ..      39      56 .. 0.68
   2 ?   11.1   0.0   5.8e-05      0.26      11      35 ..      70      94 ..      62      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.83
                TTSHHHHHHHHHH CS
      HTH_30 44 lddpddrlaLylA 56
                 +d +d+++L lA
  EHT99185.1 44 GQDVSDLYELVLA 56
                4577788888776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.8e-05
                TTT-HHHHHHHHTS-HHHHHHHHHH CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrr 35
                + gn +++A  +++ r Tlr+ L++
  EHT99185.1 70 TRGNQTRAALMMGINRGTLRKKLKK 94
                469********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1007  (0.056166); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 717.17
//
Query:       EHT99186.1  [L=262]
Description: ATP-binding component of an ABC superfamily predicted amino-acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-36  126.2   0.0    1.6e-36  125.8   0.0    1.1  1  ABC_tran      ABC transporter
    8.8e-09   35.6   0.0    0.00074   19.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.9e-06   25.9   0.0    6.5e-05   22.5   0.0    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00032   20.5   0.0      0.047   13.4   0.0    2.0  2  AAA_15        AAA ATPase domain
     0.0007   19.9   0.0     0.0015   18.8   0.0    1.6  1  AAA_22        AAA domain
     0.0012   19.3   0.0     0.0017   18.8   0.0    1.4  1  AAA_16        AAA ATPase domain
     0.0012   18.5   0.0     0.0022   17.7   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0015   18.5   0.3     0.0058   16.6   0.0    1.9  2  Rad17         Rad17 P-loop domain
      0.002   18.3   0.0     0.0031   17.7   0.0    1.4  1  AAA_33        AAA domain
     0.0021   17.2   0.0      0.004   16.2   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
     0.0021   17.3   0.0       0.32   10.1   0.0    2.1  2  DAP3          Mitochondrial ribosomal death-associated protei
     0.0049   17.4   0.0     0.0083   16.7   0.0    1.5  1  AAA_18        AAA domain
     0.0074   16.2   0.0      0.013   15.4   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
     0.0075   16.0   0.0      0.016   15.0   0.0    1.5  1  AAA_30        AAA domain
  ------ inclusion threshold ------
      0.015   15.7   0.0        4.3    7.8   0.0    2.3  2  AAA           ATPase family associated with various cellular 
      0.017   15.6   0.0      0.024   15.1   0.0    1.3  1  AAA_23        AAA domain
      0.017   14.3   0.0      0.033   13.4   0.0    1.3  1  G-alpha       G-protein alpha subunit
      0.032   14.5   0.1       0.14   12.4   0.0    2.0  2  AAA_28        AAA domain
      0.064   12.8   0.0       0.11   12.0   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
      0.067   13.4   0.3       0.91    9.8   0.3    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.077   13.3   0.1       0.11   12.8   0.1    1.4  1  AAA_19        AAA domain
      0.085   12.1   0.0       0.15   11.3   0.0    1.4  1  Zeta_toxin    Zeta toxin
       0.09   11.9   0.0       0.15   11.2   0.0    1.3  1  DUF815        Protein of unknown function (DUF815)
        0.1   12.2   0.0       0.13   11.9   0.0    1.3  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.11   12.9   0.0       0.28   11.6   0.0    1.7  1  RNA_helicase  RNA helicase
       0.11   12.2   0.0       0.25   11.1   0.0    1.5  1  AAA_24        AAA domain
       0.12   12.6   0.0       0.25   11.6   0.0    1.5  1  PCP_red       Proto-chlorophyllide reductase 57 kD subunit
       0.12   12.2   0.0       0.19   11.6   0.0    1.4  1  ATPase_2      ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   2.5e-39   1.6e-36       1     137 []      38     186 ..      38     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2.5e-39
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 lk+++l++k+ e++++ G++G+GKSt ++++ +l++ ++G+i +dg +l++  +++e++r e+g+++q+ +lfp+ltv +n              e++e
  EHT99186.1  38 LKDINLQVKPRERIVLCGPSGSGKSTTIRCINHLEEHQKGRIVVDGIHLNDdvRNIERVRTEVGMVFQHFNLFPHLTVLQNctlapmwvrkiakkEAEE 136
                 79*************************************************999*********************************999975433333 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  + ++l+++++ e +++     p +LSgGq+qrva+ar+l+ kpk++l+DEpt+
  EHT99186.1 137 LAMHYLQRVRIAEHAHKF----PGQLSGGQQQRVAIARSLCMKPKIMLFDEPTS 186
                 366666666666644444....5*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.4e-05     0.028       3      22 ..      52      71 ..      51     104 .. 0.80
   2 !   19.4   0.0   1.2e-06   0.00074     238     297 ..     159     215 ..     131     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.4e-05
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                vl Gp gsGKS+ ++++ +l
  EHT99186.1 52 VLCGPSGSGKSTTIRCINHL 71
                9****************999 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.2e-06
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTH 297
                 S G+++    +++  +++ k+++ l+DEp + L+P++++++l +++ ++++ g   +++TH
  EHT99186.1 159 SGGQQQR---VAIARSLCMKPKIMLFDEPTSALDPEMVKEVLdTMIGLAED-GMTMLCVTH 215
                 5555555...66777888888*********************555566666.788888888 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     1e-07   6.5e-05      26     205 ..      50     223 ..      33     235 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1e-07
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTT..EEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvk..kaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                   ++ Gp GSGKs  +  i ++  +      + + + d ih +++ ++++  + ev ++f++ +       +++++ ++         ki +ke+++  
  EHT99186.1  50 RIVLCGPSGSGKSTTIRCINHLEEH-----QKGRIVVDGIHLNDDVRNIErvRTEVGMVFQHFNLF-----PHLTVLQNCTLAPMWVRKIAKKEAEELA 138
                 45789**************665333.....355666666666444444331156677777666665.....4455555555555545555555544433 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHH.HHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvae.llkeksknaQfivislreemleka 205
                  ++ l++++i ++      +LSgG+++ va+a  + +   kp  ++l+De  +aLD + vk+v + ++  +++ + +++++++ ++ + +
  EHT99186.1 139 -MHYLQRVRIAEHahkfpgQLSGGQQQRVAIARSLCM---KP-KIMLFDEPTSALDPEMVKEVLDtMIGLAEDGMTMLCVTHEMGFARTV 223
                 .2344445554444444449*********99987654...34.4899*************99875267777778********99887654 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   7.3e-05     0.047      14      83 ..      38     104 ..      35     153 .. 0.75
   2 ?    5.4   0.0     0.019        12     323     364 ..     175     215 ..     159     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.3e-05
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef 83 
                 lkd+ +++++    vl+G+ +sGKS+ ++ ++ + + +    k  i+++   l++   + e  + ++ + f
  EHT99186.1  38 LKDINLQVKPReRIVLCGPSGSGKSTTIRCINHLEEHQ----KGRIVVDGIHLNDDVRNIERVRTEVGMVF 104
                 77766666666789*****************8887755....78888888888777776666666666666 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.019
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 k++i l++EP   L p++ k++ ++++ la+d+    ++ TH
  EHT99186.1 175 KPKIMLFDEPTSALDPEMVKEVLDTMIGLAEDGM-TMLCVTH 215
                 679*****************************96.6667777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.4e-06    0.0015       8      32 ..      51      74 ..      45     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.4e-06
      AAA_22  8 lvvtGesGtGKTtllrrlleqldee 32
                +v++G+sG+GK+t++r + +  + +
  EHT99186.1 51 IVLCGPSGSGKSTTIRCINHLEE-H 74
                89**************9999864.3 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-06    0.0017      25      52 ..      49      89 ..      30     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.6e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekd..............g 52
                e ++l G+sG+GKs+ +r++  +le++              +
  EHT99186.1 49 ERIVLCGPSGSGKSTTIRCIN-HLEEHqkgrivvdgihlndD 89
                567899***************.78877665444443333330 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.5e-06    0.0022      15      39 ..      41      65 ..      30      71 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.5e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                  +++++++ ++l GpsGsGKST +
  EHT99186.1 41 INLQVKPRERIVLCGPSGSGKSTTI 65
                34556677799************87 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     9e-06    0.0058      36      67 ..      39      70 ..      34     121 .. 0.80
   2 ?   -0.5   0.0       1.6     1e+03       8      25 ..     124     141 ..     118     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9e-06
       Rad17 36 kadvLesrkkriLLisGPsGCgkstvvkvLsk 67
                k   L+ ++++ ++++GPsG gkst+++ +  
  EHT99186.1 39 KDINLQVKPRERIVLCGPSGSGKSTTIRCINH 70
                555677788888899************98865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
       Rad17   8 lWfekykPekaeelavhk 25 
                  W+ k   + aeela+h 
  EHT99186.1 124 MWVRKIAKKEAEELAMHY 141
                 69**************95 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.8e-06    0.0031       2      33 ..      51     102 ..      51     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.8e-06
      AAA_33   2 vllvGlpGsGKstlae..rllkklg.......avllssdt...........l 33 
                 ++l+G++GsGKst ++  ++l++++       +++l+ d+           +
  EHT99186.1  51 IVLCGPSGSGKSTTIRciNHLEEHQkgrivvdGIHLNDDVrniervrtevgM 102
                 689***********99445788888888888888888887666665554441 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.3e-06     0.004     122     166 ..      41      83 ..      31     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.3e-06
       T2SSE 122 lrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDp 166
                 ++  v+ r  i++ G+ gsGK+t++  + +  ++++ riv+  D 
  EHT99186.1  41 INLQVKPRERIVLCGPSGSGKSTTIRCINHLEEHQKGRIVV--DG 83 
                 7778999*****************98776665666778775..55 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0005      0.32      18      40 ..      43      65 ..      35      84 .. 0.80
   2 ?    5.2   0.0     0.016        10     254     287 ..     115     149 ..      95     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0005
                -SSS---EEEEE-SSSSSTTTTH CS
        DAP3 18 dkkkkvkrlvltGekgsGKSvlL 40
                 + k+ +r+vl G  gsGKS+++
  EHT99186.1 43 LQVKPRERIVLCGPSGSGKSTTI 65
                678999**************987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.016
                 ........EEE-----GGGTHHHHHHHHHTT---S CS
        DAP3 254 alk.gkvepieveglskeEarslleyyadsgvlqe 287
                 +l+   + p++v ++ k+Ea++l   y+++  + e
  EHT99186.1 115 VLQnCTLAPMWVRKIAKKEAEELAMHYLQRVRIAE 149
                 34445699***************888888876665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-05    0.0083       1      33 [.      51      91 ..      51     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf........gvnlrdvak 33
                I+l+G++G+GK+t  + ++ +++         g++l+d ++
  EHT99186.1 51 IVLCGPSGSGKSTTIRCINHLEEHqkgrivvdGIHLNDDVR 91
                99************998844433335457788444444443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.013      92     126 ..      40      75 ..      33      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  +++ ++k  + +vl+G+SG GKSt i  ++  +e +
   EHT99186.1  40 DINLQVKPrERIVLCGPSGSGKSTTIRCINHLEEHQ 75 
                  566666665789************998877644444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.4e-05     0.016      20      51 ..      50      81 ..      41     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrvig 51
                  vl Gp G+GK+t+++ ++++ e+++gr+++
  EHT99186.1 50 RIVLCGPSGSGKSTTIRCINHLEEHQKGRIVV 81
                56899*********************777764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0067       4.3       1      18 [.      51      68 ..      51      96 .. 0.90
   2 ?    5.6   0.0     0.031        20      15      74 ..     130     191 ..     124     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0067
                EEEESSTTSSHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakav 18
                ++l+Gp G GK+++++ +
  EHT99186.1 51 IVLCGPSGSGKSTTIRCI 68
                579***********9977 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
                 HHHHHHHHTHEE.EEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHH CS
         AAA  15 akavakelgvef.leisgsellskyvgesekkirelfkeakeka.kpsilfiDEidalaksr 74 
                 ak  a+el +++  ++  +e   k+ g+ +   ++ ++ a++   kp+i+++DE  +    +
  EHT99186.1 130 AKKEAEELAMHYlQRVRIAEHAHKFPGQLSGGQQQRVAIARSLCmKPKIMLFDEPTSALDPE 191
                 445555565444278899999999*************999998899********77665555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.8e-05     0.024      22      40 ..      51      69 ..      32     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.8e-05
      AAA_23 22 tlItGpNGaGKTTildAik 40
                 +++Gp G+GK+T +++i 
  EHT99186.1 51 IVLCGPSGSGKSTTIRCIN 69
                589**************95 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.1e-05     0.033      25      49 ..      50      74 ..      36     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
                EEEEEESTTSSHHHHHHHHHHHCS- CS
     G-alpha 25 kllllGqseSGKsTilkqlkllykk 49
                +++l+G s+SGKsT+++ +  l+++
  EHT99186.1 50 RIVLCGPSGSGKSTTIRCINHLEEH 74
                89***************99977744 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00022      0.14       1      26 [.      50      80 ..      50      85 .. 0.78
   2 ?   -1.3   0.0       3.6   2.3e+03      68      85 ..     220     237 ..     203     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
      AAA_28  1 kivitGgestGKTtll...eaLaar..gypv 26
                +iv+ G++++GK+t++   ++L+++  g  v
  EHT99186.1 50 RIVLCGPSGSGKSTTIrciNHLEEHqkGRIV 80
                79*************9666677777655544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.6
      AAA_28  68 aaaaankvlfcDrglldt 85 
                 a++ a++v+f+Drg + +
  EHT99186.1 220 ARTVADRVIFMDRGEIVE 237
                 556688999999986655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.11      27      57 ..      42      74 ..      37      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
       AAA_7 27 elllknkkpvllvGptGtGKtviikd..llkkl 57
                +l +k +  ++l+Gp+G+GK+++i+    l++ 
  EHT99186.1 42 NLQVKPRERIVLCGPSGSGKSTTIRCinHLEEH 74
                566888999**************9862244444 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3    0.0014      0.91      63      88 ..     175     200 ..     137     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0014
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllell 88 
                 +++++++DE  s lD+e+++++l+++
  EHT99186.1 175 KPKIMLFDEPTSALDPEMVKEVLDTM 200
                 4899******************9976 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00018      0.11      10      62 ..      48     100 ..      41     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00018
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62 
                 ++ +++ ++ G+GK++++++i +l ++++g+ + + + +    r  +++r+++
  EHT99186.1  48 RERIVLCGPSGSGKSTTIRCINHLEEHQKGRIVVDGIHLNDDVRNIERVRTEV 100
                 5668899999*********9887776666655555555555555555555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.15      17      51 ..      49      83 ..      35     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
  Zeta_toxin 17 klillgGqpGAGKselaellkdelerqgnvvrldp 51
                  i+l G +G+GKs++++ ++   e+q++ +++d+
  EHT99186.1 49 ERIVLCGPSGSGKSTTIRCINHLEEHQKGRIVVDG 83
                5699**************99877666777777775 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023      0.15      50      85 ..      45      80 ..      40     111 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
      DUF815 50 glpannvLLwGarGtGKSslvkallneyaeegLrli 85
                 +p + ++L G  G+GKS++++ + +  ++++ r++
  EHT99186.1 45 VKPRERIVLCGPSGSGKSTTIRCINHLEEHQKGRIV 80
                5677889***************99887777775555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.13       3      49 ..      51      96 ..      49     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
                EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCC CS
        cobW  3 tvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellret 49
                +vl+G+ GsGK+t ++ + + ++++k  ++v  +  ++ D + +++ 
  EHT99186.1 51 IVLCGPSGSGKSTTIRCINHLEEHQKGRIVVDGIH-LNDDVRNIERV 96
                799*************9999999999999998888.88887777655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00043      0.28       1      31 [.      51      76 ..      51      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00043
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkk 31
                  i+l+Gpsg GKSt+++  +++l+    +++k
    EHT99186.1 51 IVLCGPSGSGKSTTIRC-INHLE----EHQK 76
                  799***********998.44444....4444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00038      0.25       4      22 ..      50      68 ..      48      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                +i++ Gpsg+GK+t+++ +
  EHT99186.1 50 RIVLCGPSGSGKSTTIRCI 68
                89*************9876 PP

>> PCP_red  Proto-chlorophyllide reductase 57 kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00039      0.25       9      28 ..     116     138 ..     113     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00039
                 HTTS...-HHHHHHHHHHHHHHH CS
     PCP_red   9 Lkki...PffvRkkaRraaEklA 28 
                 L++    P +vRk a+++aE+lA
  EHT99186.1 116 LQNCtlaPMWVRKIAKKEAEELA 138
                 6665666***************9 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00029      0.19      16      57 ..      44      84 ..      38     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkeiienledkdkyviyyial 57
                + +p+e +++ Gp gsGK++ ++  i+ le+++k +i ++ +
  EHT99186.1 44 QVKPRERIVLCGPSGSGKSTTIR-CINHLEEHQKGRIVVDGI 84
                56788999**************8.678888888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 1896.20
//
Query:       EHT99187.1  [L=49]
Description: DnaJ-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-09   35.6   0.1    7.8e-09   35.5   0.1    1.1  1  DnaJ      DnaJ domain
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.17   11.7   0.0    1.1  1  NIL       NIL domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   8.7e-13   7.8e-09      16      55 ..       2      38 ..       1      46 [. 0.91

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 8.7e-13
                HHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTS CS
        DnaJ 16 eIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsd 55
                +Ik+aY+k alkyHPD+n   p  +e  k +n+A+++L+ 
  EHT99187.1  2 DIKAAYKKSALKYHPDRN---PLGAELMKAVNTAFDFLMA 38
                7*****************...999999**********975 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.9e-05      0.17      14      39 ..      19      44 ..      11      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                S-HHHHHHHHHT-EEEEEEEEEEEET CS
         NIL 14 ePllshlvrqlglevnIlqGsveriq 39
                 Pl ++l+++ + ++ +l +++++i+
  EHT99187.1 19 NPLGAELMKAVNTAFDFLMANIDKIN 44
                79999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 391.90
//
Query:       EHT99188.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99188.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99188.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99188.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99188.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 878.44
//
Query:       EHT99189.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99189.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1042.78
//
Query:       EHT99190.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT99190.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99190.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99190.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99190.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99190.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99190.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT99190.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99190.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99190.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99190.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99190.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT99190.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99190.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT99190.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99190.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT99190.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT99190.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT99190.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99190.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT99190.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99190.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT99190.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99190.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99190.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99190.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99190.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99190.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99190.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99190.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT99190.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT99190.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT99190.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT99190.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT99190.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99190.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99190.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 3827.93
//
Query:       EHT99191.1  [L=308]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2279.11
//
Query:       EHT99192.1  [L=340]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.8e-22   79.7   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.5e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
      4e-09   37.0   1.1    2.7e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
    3.9e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    2.1e-06   27.3   4.7    4.4e-06   26.3   0.3    3.0  3  HTH_33        Winged helix-turn helix
    1.4e-05   25.2   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.8   0.2      0.061   13.9   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.051   13.3   0.6       0.15   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   8.1e-26   1.8e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 8.1e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99192.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99192.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.5e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99192.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99192.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99192.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.7e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT99192.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99192.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.7e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.7e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99192.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT99192.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.3   1.9e-09   4.4e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.7   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.9e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99192.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99192.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.7
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99192.1 314 SSMWQLLKK 322
                 789999986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2     9e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22   4.9e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99192.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99192.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99192.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.15      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT99192.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99192.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2814.02
//
Query:       EHT99193.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT99193.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99193.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99193.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99193.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99193.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99193.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT99193.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99193.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99193.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99193.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99193.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT99193.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99193.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT99193.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99193.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT99193.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT99193.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT99193.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99193.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT99193.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99193.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT99193.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99193.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99193.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99193.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99193.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99193.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99193.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99193.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT99193.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT99193.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT99193.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT99193.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT99193.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99193.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99193.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 3425.41
//
Query:       EHT99194.1  [L=53]
Description: hypothetical protein CKS_5300 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       116  (0.00646996); expected 358.6 (0.02)
Passed bias filter:                       91  (0.00507558); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 421.00
//
Query:       EHT99195.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99195.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99195.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99195.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99195.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 900.14
//
Query:       EHT99196.1  [L=455]
Description: retron-type reverse transcriptase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-43  146.4   0.0    1.7e-42  145.5   0.0    1.5  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.2e-17   63.7   4.0      3e-17   62.4   4.0    1.7  1  GIIM      Group II intron, maturase-specific domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.0   1.9e-46   1.7e-42       1     221 [.     111     316 ..     111     317 .. 0.95
   2 ?   -3.6   0.0      0.74   6.7e+03     103     118 ..     381     396 ..     370     412 .. 0.50

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 1.9e-46
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ipK+g g+ R +++++v ++++++++ + L+++l++++se+++gfrpgr   dav  ++++  ++ + ++++++Dl+k+Fd+v+++ l+ +l +   + 
  EHT99196.1 111 IPKPG-GGQRELGIPTVTDRLIQQALLQVLQPLLDPTFSEHSYGFRPGRRAQDAVLAAQAF--AQSGRRVVVDVDLEKFFDRVDHDILIGRLRKRIDDA 206
                 8****.***********************************************88666666..88*****************************88888 PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                  +i l++++l     ++ ++g   + +  k g+pqG++lSPll+n++++e+++el++r  g  ++rYaDD+ ++++s+ + q+++  +++ +++ +lk+
  EHT99196.1 207 GVIWLVRAYL----NAGIMDGG--TIIQRKLGTPQGGPLSPLLANVLLDEVDKELERR--GHSFVRYADDCNVYVNSRRAGQRVMALLVRLFNRLKLKV 297
                 8999999999....67789997..79999****************************8..*************************************** PP

                 EGGG-EEE.....ESSEEETTEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvt 221
                 n++K+ ++    ++ + k+LG+ 
  EHT99196.1 298 NEAKSAVA----SAFTRKFLGYA 316
                 ********....599******96 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.74
                 ................ CS
       RVT_1 103 nliksflstrsfsvrv 118
                 ++++++l++r  ++++
  EHT99196.1 381 KTLEEWLRHRLRALQL 396
                 3344444444433333 PP

>> GIIM  Group II intron, maturase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   4.0   3.3e-21     3e-17       2      72 ..     335     405 ..     334     414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.3e-21
        GIIM   2 krlkrkireltkrsskgvsleelirklnpilrGWanYyrlgvakrvfskldhyirrrLrrwllrkhkkkk.r 72 
                 +++++++r+lt+r+  g s+ e+i++l p+l GW +Y++l+++ rv ++l++++r+rLr+  l+++++ +  
  EHT99196.1 335 AAFRHRVRKLTQRN-GGRSMTEVIQRLRPYLLGWRAYFSLAQTPRVWKTLEEWLRHRLRALQLKQWRRGTtM 405
                 78*********777.99**************************************************96642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 3956.05
//
Query:       EHT99197.1  [L=155]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1181.56
//
Query:       EHT99198.1  [L=67]
Description: hypothetical protein CKS_5305 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 539.89
//
Query:       EHT99199.1  [L=51]
Description: hypothetical protein CKS_5306 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.2   0.2        0.1   12.2   0.2    1.1  1  AIRC      AIR carboxylase


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   5.8e-06       0.1      61      90 ..       3      33 ..       1      48 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.8e-06
                EEESS--HHHHHHHHSSS-E.EEEEE--STT CS
        AIRC 61 gAGgaahLpgvvaslttlPV.igvPvkskal 90
                 AG aa +pgv+a + +lPV i++ v   +l
  EHT99199.1  3 LAGVAAVIPGVLADNISLPVtIAMQVGYASL 33
                69*****************955555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 460.10
//
Query:       EHT99200.1  [L=221]
Description: mediator of plasmid stability [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-47  156.8   1.1    4.7e-25   87.2   0.1    2.1  2  Plasmid_stab_B  Plasmid stability protein
  ------ inclusion threshold ------
      0.085   12.3   0.0       0.18   11.3   0.0    1.7  1  T6SS_VasJ       Type VI secretion, EvfE, EvfF, ImpA, BimE, VC


Domain annotation for each model (and alignments):
>> Plasmid_stab_B  Plasmid stability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.1   5.3e-29   4.7e-25       2      72 .]       5      74 ..       4      74 .. 0.98
   2 !   68.7   0.2   3.2e-23   2.9e-19       1      72 []     109     178 ..     109     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 5.3e-29
  Plasmid_stab_B  2 kisfyLkpdavkadkralatldslpqkeRgrllRaaliaGlaLhkldprlpvllaellteelsaeelvkli 72
                    ++sfyL++d+ ++d +a+at+++++q++Rg+++R+a++aG++++++d+rlpvll+ +++++lsa +l++++
      EHT99200.1  5 QYSFYLHSDD-RTDIAAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPVLLPLFFDGQLSAIRLCAVM 74
                    89*******9.********************************************************9986 PP

  == domain 2  score: 68.7 bits;  conditional E-value: 3.2e-23
  Plasmid_stab_B   1 rkisfyLkpdavkadkralatldslpqkeRgrllRaaliaGlaLhkldprlpvllaellteelsaeelvkli 72 
                     r+++++L+ d  ++ +r++++l+ +++++Rg+llR+++i+GlaLh+++p+lp+lla+++ ++ +++el++l+
      EHT99200.1 109 RRYTLTLQDD--RSSERVESVLTGVSSRLRGELLRNLIITGLALHTMAPELPRLLASMPVPPDTVSELQALV 178
                     9*********..6999****************************************************9986 PP

>> T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05      0.18      36      94 ..      80     137 ..      51     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2e-05
   T6SS_VasJ  36 rWdsitslPpadaegrTrlaapsadrvaeykrllkqgewaelleeaEaslteapfwLDl 94 
                 +W+s+++lP+ +++g T la +s +   + +r     ++    e++E+ lt     L +
  EHT99200.1  80 TWSSLSGLPDEQDGGVTALA-MSPEAKYQRRRYTLTLQDDRSSERVESVLTGVSSRLRG 137
                 8*****************96.55555555555555677777788888888766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1777.14
//
Query:       EHT99201.1  [L=324]
Description: mediator of plasmid stability [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     8e-112  373.6   0.0   9.5e-112  373.3   0.0    1.0  1  StbA      StbA protein
     0.0034   16.3   0.0          2    7.2   0.0    2.1  2  MreB_Mbl  MreB/Mbl protein
     0.0043   17.2   0.0     0.0073   16.5   0.0    1.4  1  ALP_N     Actin like proteins N terminal domain


Domain annotation for each model (and alignments):
>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.3   0.0  1.6e-115  9.5e-112       1     314 [.       2     317 ..       2     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 373.3 bits;  conditional E-value: 1.6e-115
        StbA   1 lkivvDDGstnikLawledgevktlispnsfkeewsvslgdkkpanYlidgekysfdslssdavettevsyqYsdvnvvaihhaLlksGlkpqdvdvvv 99 
                 ++i +DDGstn+kLaw e +e++t +s nsf+++w+v+  +++++nY++   ky++ds+s da+ tt+v+yqY d+n++a+hhaLl+ Gl+pq+v ++v
  EHT99201.1   2 MNIYCDDGSTNVKLAWFEGDELQTRVSANSFRHGWKVAEFSAATFNYQVGALKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNCGLEPQPVTLTV 100
                 89***********************************99889********************************************************* PP

        StbA 100 tLPlseyydannqpneenierkkanvmrevelqggesftikkvkvlPeslPagfealkeld..eleslLiiDlGGttLDvakvrgklegiskvkgdski 196
                 tLPlseyyd + q+neeni rk++n+mre+ l++g +ft+ +vkv+PeslPa+f+ l+el+    e  LiiDlGGttLD + + g++++is v+g++++
  EHT99201.1 101 TLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKpgPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSV 199
                 ***********************************************************973358********************************** PP

        StbA 197 GvslitdavkealetaktrtssfladeliknrkdeeyLkrrindedkresvlevinekvkkLkerviravsefsgythvmvvGGGaeliaeaikkatev 295
                 Gvs +t a   al  a+ +ts  +ad++i+nr+d++yL+r ind+ k++ vl+ i e+  +L  rv+++++ f ++++v++vGGGa+li+eai++a  +
  EHT99201.1 200 GVSQVTRAAAGALRAADSETSALIADTVIRNRNDRQYLQRVINDAGKIDDVLSKITEAITSLGARVTSELTAFRNVNRVFLVGGGASLIEEAIRQAWPL 298
                 *************************************************************************************************** PP

        StbA 296 sdekvikvdnpqfaLvlgl 314
                 + +++ + ++pq aL++ +
  EHT99201.1 299 APDRIEVIGDPQLALAREI 317
                 ***************9766 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00033         2     109     162 ..     128     183 ..     121     194 .. 0.82
   2 !    7.0   0.0   0.00038       2.3     246     286 ..     247     287 ..     233     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHTT-SEEEEEEHHHHHHHH..TT--TTSSS-EEEEEE-SS-EEEEEE CS
    MreB_Mbl 109 rrAvkeaakkaGarevllieeplaAAiG..aglpveepsgnmvvdiGggttevavi 162
                 r+ v +  +    ++v+++ e+l AA    a+l+   ++ ++++d+Gg t +  vi
  EHT99201.1 128 RELVLNKGRAFTVTDVKVMPESLPAAFSrlAELKPGPAETTLIIDLGGTTLDAGVI 183
                 55566666777778999********9975578888899**************9998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGS CS
    MreB_Mbl 246 lkepvsaiveavkevLektppeLaadivdrgivltGGgall 286
                 + +++s+i+ea+++   ++  eL+a    + ++l+GGga l
  EHT99201.1 247 IDDVLSKITEAITSLGARVTSELTAFRNVNRVFLVGGGASL 287
                 78999********************9998999999999877 PP

>> ALP_N  Actin like proteins N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06    0.0073      69     145 ..      68     149 ..      17     150 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
                 SSTT-TTSTTTHHHHHHHHHHH-.--EEEEEEEEE-GGGH.HHHHHHHHHHHTTEEEEEE...GGGEEEEEEEEEEEEEETT CS
       ALP_N  69 ldddkaasedykalllaalallg.keeevvLvtGLPveqy.kkqkealkkrlkgehevvs...vngkersvevekvrvipQp 145
                 ++ ++ + +  ++ ++ al  +g + ++v+L + LP+++y + + ++ ++ ++ + e  +   v +k+r ++v++v+v+p+ 
  EHT99201.1  68 TNVEYQYGDLNLLAVHHALLNCGlEPQPVTLTVTLPLSEYyDGDCQRNEENIRRKRENLMrelVLNKGRAFTVTDVKVMPES 149
                 45555566666666666677776366***********887766666666666666665555779999*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2524.78
//
Query:       EHT99202.1  [L=143]
Description: DNA polymerase V, subunit D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-12   47.5   0.0    1.6e-12   47.2   0.0    1.2  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0     9e-17   1.6e-12       3      68 ..      59     122 ..      57     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 9e-17
                    XSSTT.CCTXXTTXEEEEECTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SSTTSTEEEEC CS
  Peptidase_S24   3 pGdSM.eptlldGdlilVdkfsepkrGdivvfrlpgeeeayiKrviglpgdrvllasnneypplyin 68 
                     GdSM + +l +Gdl++Vd  ++p++Gdivv+ ++ge   ++Kr+  +p  +++ + n  + p+y +
     EHT99202.1  59 SGDSMsDGSLYNGDLLVVDSAEKPRHGDIVVASVQGE--FTVKRLLLTPRLTLQ-PMNASWSPIYPD 122
                    7****99******************************..******977766666.777668888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1222.70
//
Query:       EHT99203.1  [L=423]
Description: DNA polymerase V, subunit C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-33  115.2   0.1    7.2e-33  113.7   0.0    1.7  2  IMS              impB/mucB/samB family
    8.1e-19   68.5   0.0    1.7e-18   67.4   0.0    1.6  1  IMS_C            impB/mucB/samB family C-terminal domain
    2.4e-18   65.9   0.8    8.6e-18   64.2   0.0    2.3  2  DUF4113          Domain of unknown function (DUF4113)
    5.5e-05   23.3   0.0    0.00014   22.0   0.0    1.8  1  IMS_HHH          IMS family HHH motif
     0.0012   18.6   1.3       0.01   15.6   0.0    3.0  4  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
  ------ inclusion threshold ------
      0.031   14.5   0.0      0.084   13.1   0.0    1.8  1  Cdd1             Pathogenicity locus


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   2.4e-36   7.2e-33       2     148 ..       6     148 ..       5     149 .. 0.95
   2 ?   -2.0   0.0       1.1   3.2e+03      51      91 ..     235     277 ..     226     287 .. 0.65

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 2.4e-36
                 EETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTH.TT.-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETT CS
         IMS   2 DmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklc.pd.livvkvdlekyrraskkileilkrfispkvekasiD 98 
                 D+++Fyas+er+ +p+LkgkPvvv ++++  g via s eA+   +k g +++++k    p+ ++++++++e+y ++s++++++l++  +p+ve++siD
  EHT99203.1   6 DVNSFYASCERVFRPDLKGKPVVVLSNND--GNVIARSAEAKP-WIKMGTPWFQIKNELhPEqIYFFSINYELYASMSARVMSCLEEL-APRVEQYSID 100
                 99*************************77..**********87.5**********97663766*************************.78******** PP

                 EEEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHH CS
         IMS  99 EayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKla 148
                 E++ldltg+e+ +    +++ ++lr+++++ ++lt+ +G a++k+lAK a
  EHT99203.1 101 EMFLDLTGVEHCMTL--EDFDRQLRQHVYDCTRLTIGVGAAQTKTLAKSA 148
                 *************98..7******************************76 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 SBHHHHHTTHTT-EEE...EEE-HHHHHHHHHHHHHHHHH-S.. CS
         IMS  51 mrikeakklcpdlivv...kvdlekyrraskkileilkrfispk 91 
                 m+++ea    +++++      ++++y ++ ++++++++r+ s+k
  EHT99203.1 235 MSLEEAPPTKQQIVCSrsfGEKITEYDSLRQAVCQYAERA-SEK 277
                 5555555554444443444567788888888888888887.434 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   5.8e-22   1.7e-18       3     111 ..     239     354 ..     237     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 5.8e-22
       IMS_C   3 earpepksissektfpepyd.esklkkelreLaeelarrLrdkglvartitlklrysdfh.......asrsatLprptsdtreileaalkLlrrlidep 93 
                 ea+p +++i ++++f+e ++ +++l++ ++++ae+++++Lr++++++r+i++++++s+f        +  + +L +pt+dtr+i++aa   l+r+++ +
  EHT99203.1 239 EAPPTKQQIVCSRSFGEKITeYDSLRQAVCQYAERASEKLRQEHQYCRHISVFIKTSPFAvkepyygNVATEKLLTPTQDTRDIIAAAATALERIWK-D 336
                 5778889**********6664766*********************************7777777777888889999*********************.* PP

       IMS_C  94 glpirligvsasnlveka 111
                 g ++ + gv++++++ + 
  EHT99203.1 337 GHRYAKAGVMLNDFTGSG 354
                 **************9443 PP

>> DUF4113  Domain of unknown function (DUF4113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.92   2.7e+03      18      33 ..     133     153 ..     131     159 .. 0.66
   2 !   64.2   0.0   2.9e-21   8.6e-18       2      50 ..     372     419 ..     371     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.92
     DUF4113  18 tvklaaqg.....lkasWkmk 33 
                 t++++a++       a+W+ k
  EHT99203.1 133 TIGVGAAQtktlaKSAQWASK 153
                 899999985654434557665 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 2.9e-21
     DUF4113   2 rLmkalDaiNrrfGrgtvklaaqglkasWkmkrehlSprYTTrwdelpv 50 
                 +Lmk+l  iN+  G g+v++a  g+ +sW+mkr++lSp+YTTrw+++p 
  EHT99203.1 372 ELMKVLAGINH-SGLGHVWFAGRGIAPSWQMKRDMLSPAYTTRWKDIPI 419
                 6*********6.8***********************************7 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.8e-08   0.00014       5      32 .]     173     200 ..     169     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.8e-08
     IMS_HHH   5 kefLwplpitkipGiGgklgekLeklGi 32 
                 +++L+  p+ +i+G+G + + kL++lGi
  EHT99203.1 173 RKLLSLQPVEEIWGVGNRIARKLNVLGI 200
                 6677667********************9 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.6   7.9e+03      12      21 ..      42      51 ..      41      52 .. 0.84
   2 ?   -3.5   0.0       3.2   9.7e+03      21      29 ..     111     119 ..     107     125 .. 0.75
   3 ?   -0.3   0.1      0.34     1e+03      12      30 ..     145     163 ..     134     175 .. 0.68
   4 !   15.6   0.0   3.5e-06      0.01       5      28 ..     183     206 ..     181     217 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.6
  DNA_pol_lambd_f 12 ktAkkwyakG 21
                     + Ak w+++G
       EHT99203.1 42 AEAKPWIKMG 51
                     67999**998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
  DNA_pol_lambd_f  21 Girtledlr 29 
                      +++tled  
       EHT99203.1 111 HCMTLEDFD 119
                      689999965 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.34
  DNA_pol_lambd_f  12 ktAkkwyakGirtledlra 30 
                      ++  +w +k ++ +  ++a
       EHT99203.1 145 AKSAQWASKEWKQFRGVLA 163
                      5677899999988877766 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 3.5e-06
  DNA_pol_lambd_f   5 kvyGVGpktAkkwyakGirtledl 28 
                      +++GVG ++A+k+   Girt  dl
       EHT99203.1 183 EIWGVGNRIARKLNVLGIRTALDL 206
                      69******************8877 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.8e-05     0.084       5      44 ..     178     217 ..     174     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
        Cdd1   5 lkelqdiPniGkalaedlvelGirsveelkgedpeelyek 44 
                 l+  ++i ++G+++a++l  lGir+  +l+  +p+ + ++
  EHT99203.1 178 LQPVEEIWGVGNRIARKLNVLGIRTALDLALTNPAFIRKN 217
                 56678999***********************999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3294.87
//
Query:       EHT99204.1  [L=214]
Description: RepE family replication initiation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-38  131.5   0.0    4.4e-38  131.3   0.0    1.0  1  Rep_3            Initiator Replication protein
  ------ inclusion threshold ------
      0.038   13.2   0.0      0.052   12.7   0.0    1.2  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Rep_3  Initiator Replication protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   4.9e-42   4.4e-38      25     222 .]       1     205 [.       1     205 [. 0.89

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 4.9e-42
                 HHHHHHHTS-TT.S---SS....EEEEHHHHH....HHHT--HHHHHHHHHHHHH-B---S...----------BSEEEEEEETTT.....TEEEEEE- CS
       Rep_3  25 lfvlalskikkk.dedeke....ykisasdlaeellgvkaegaykrlkealerLdkkdfki...geekdeeevenlvlwvgiikavky.kegkvelefs 114
                 +++l + +i+k+ +   +e    ++i++ ++ae + g+++ +a k++++al+ ++ k + +   +e+  ee+ ++ ++w+    +++  + g +++ ++
  EHT99204.1   1 MLYLFVDQIRKSdG-TLQEhdgiCEIHVAKYAETF-GLTSAEASKDIRQALKGFAGKEVVFyrpEEDAGEEKGYESFPWFIK--RAHSpSRGLYSVHIN 95 
                 68899999999953.33334788*********777.9999999************888777788778888889999999884..44556********** PP

                 TTTGGGSS--GGGEEEEEHHHHHH---HHHHHHHHHHHHTSS...-EEEEEEHHHHHHHH.T-EESS-SHHHHHHHTHHHHHHHHHHHSSEEEEEEEE- CS
       Rep_3 115 dtlkpyllelkknftkyelaefskLrskyskrLyellkqfks...tgkdeisleelkellglpkskykrfkdlkkrvlkpaikeineltdinleyekek 210
                 ++l p+++ l+++ft++ l+e+ ++ ++y++rLye l+q+++    g ++ ++++++e+ +lp  +y+r+ d+++r+l+ +++ein +t++ l y ++k
  EHT99204.1  96 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKadgSGVVSLKIDWIMERYQLP-QSYQRLPDFRRRFLQASVDEINSRTPMRLWYIEKK 193
                 ****************************************6644477799*************.999******************************** PP

                 -TTS--EEEEEE CS
       Rep_3 211 kGrkitsieFti 222
                 kGr++t+i+Ft+
  EHT99204.1 194 KGRQTTHIVFTF 205
                 **********98 PP

>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.8e-06     0.052     168     249 ..      32     113 ..      15     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.8e-06
  Lip_A_acyltrans 168 erfggkllprknaikelikalrkgevvvllpDqdlgrkdsvf.vpfFgepaatttspaklalktkaavipvaiirkkdgskyt 249
                      e fg+   + +++i++++k     evv + p++d g++++++  p F  + a+ +s +++++ ++  +ip++i  +++  +++
       EHT99204.1  32 ETFGLTSAEASKDIRQALKGFAGKEVVFYRPEEDAGEEKGYEsFPWFI-KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 113
                      6677777777888**************************997368886.567889999**************98887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1754.49
//
Query:       EHT99205.1  [L=89]
Description: hypothetical protein CKS_5312 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.019   13.7   0.0      0.021   13.6   0.0    1.0  1  DUF790    Protein of unknown function (DUF790)


Domain annotation for each model (and alignments):
>> DUF790  Protein of unknown function (DUF790)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.2e-06     0.021     304     345 ..       9      55 ..       2      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-06
      DUF790 304 gsvmiPDFale.....ekdgrrvyleIvGfwtpeylkkKleklrkae 345
                 ++v+ PDF l+     e+  +++++e +G+ +++y+ +K +  + +e
  EHT99205.1   9 EEVIHPDFILNvapasESAVTTFIIETMGYDSEDYITSKQNTHSWME 55 
                 68999*****999998889999****************987766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 861.75
//
Query:       EHT99206.1  [L=261]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-41  142.5   0.0    1.4e-41  142.2   0.0    1.1  1  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
       0.03   12.6   0.0      0.038   12.3   0.0    1.1  1  Malate_synthase  Malate synthase


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   1.5e-45   1.4e-41       1     170 [.      44     235 ..      44     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 1.5e-45
                      .HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSE................EEEECT.HHHH CS
  Phage_integrase   1 kvltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgske................ravpls.eeal 77 
                      k+l + ev++ll+++++   +++k+l+ +l+++G+Ri+E+l+L   d+ l+  + +v+ + +K+++e                r vpls  +++
       EHT99206.1  44 KYLLAPEVSALLHYIPD---LYRKTLVDTLWNSGARINEALALGRTDFLLQPPYPFVQLATLKQRTEksartagrapagsqahRLVPLSdVNYV 134
                      6899*************...**************************************7778877777788899999999999******889** PP

                      HHHHHHHHHH...CHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S.....SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH CS
  Phage_integrase  78 ellkellska...leeaeksellfaskrgkplsrqtvrkafkraveeagie.....kpltpHtlRhsfataLleagvdlrvvqkllGHssistt 163
                      ++l++++++    le+++k++    ++r ++++++tvr+++ +av +a+++      p+tpHt+Rhs+a+++l++g++l+v+q+llGH+sis+t
       EHT99206.1 135 SQLEMMVATLkipLERRNKRTGRTEKARIWEVTDRTVRTWLAEAVDAAAADgvtfsVPVTPHTFRHSYAMHMLYNGIPLKVLQSLLGHRSISST 228
                      ************************************************9999****************************************** PP

                      HHHHCCC CS
  Phage_integrase 164 qiYthva 170
                      +iYt+v+
       EHT99206.1 229 EIYTKVF 235
                      *****97 PP

>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-06     0.038      55     115 ..     126     184 ..      97     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-06
                      HHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCCCCCCSSSEEEEESSTTS-- CS
  Malate_synthase  55 dflketkylreepewktatlhielqdrrveiiGkadrkmiinalnesaittiaDfEDsvap 115
                        l++++y+  + e ++atl+i l+ rr++++G+++++ i ++    ++t++a   D++a+
       EHT99206.1 126 VPLSDVNYVS-QLEMMVATLKIPLE-RRNKRTGRTEKARIWEVTDRTVRTWLAEAVDAAAA 184
                      5568999998.999999******97.7789****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 2442.65
//
Query:       EHT99207.1  [L=160]
Description: family M50 peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-11   41.7   0.6    9.1e-11   41.5   0.6    1.1  1  Peptidase_M50   Peptidase family M50
    1.9e-06   27.6   8.6    9.4e-06   25.4   8.6    2.0  1  Peptidase_M50B  Peptidase M50B-like
      0.005   17.1   6.7      0.032   14.5   6.7    2.0  1  DUF3267         Putative zincin peptidase
  ------ inclusion threshold ------
       0.24   11.3   1.8        6.9    6.6   0.1    2.5  2  Tail_VII        Inovirus G7P protein


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.6     2e-14   9.1e-11       3     108 ..      21     110 ..      19     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2e-14
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   3 illlgilvvvHElGHflvAklcgvkveefsigfGpkllsfkkgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGplan 98 
                     lll++l ++HElGH+l+A l g  v ++ ig  p   ++  g + +++ ++p GG V+ +  +               ++ w+ ++  lAGpl+ 
     EHT99207.1  21 YLLLFLLTILHELGHALMAMLLGTTVTRIQIGI-PVTGQIAVGTILFQLGMIP-GGSVSYEYAD--------------DAPRWKVVAATLAGPLFP 100
                    5789999*********************99999.8888888************.*****99988..............5688************** PP

                    XXXXXXXXXX CS
                    xxxxxxxxxx RF
  Peptidase_M50  99 filailvfvv 108
                    +++++++f+ 
     EHT99207.1 101 VLISVAMFLT 110
                    ****999986 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   8.6   2.1e-09   9.4e-06      11      88 ..      13     111 ..       1     147 [. 0.71

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.1e-09
  Peptidase_M50B  11 lwnk.pllrpfkllvvffHElGHalaalLtGgrvkgielhsd.................esGvtvtrg...pgglgqiltllaGYlgpallGlll 84 
                     +w   + l+++  l +++HElGHal+a+L+G  v++i++                     +G   ++      +++ ++ +laG+l p l+ +++
      EHT99207.1  13 TWMDlVWLYLLLFLLTILHELGHALMAMLLGTTVTRIQIGIPvtgqiavgtilfqlgmiPGGSVSYEYaddAPRWKVVAATLAGPLFPVLISVAM 107
                     444434455678899************************98878888888888888887555544433335444566777788888888887777 PP

  Peptidase_M50B  85 ills 88 
                     +l +
      EHT99207.1 108 FLTT 111
                     7654 PP

>> DUF3267  Putative zincin peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   6.7     7e-06     0.032       2      95 ..      25     133 ..      24     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7e-06
     DUF3267   2 lvlvilHEllHglffklfgkkpkkkvkfgi...k...............lliayatsseallskkqfiiilla.Pfvllgilllllalllpsstlllll 81 
                 ++l ilHEl H+l+ +l+g  + +++++gi   +                + + + + +   ++++++ ++la P++ + i +++ +  +ps   +++ 
  EHT99207.1  25 FLLTILHELGHALMAMLLGT-TVTRIQIGIpvtGqiavgtilfqlgmipGGSVSYEYADDA-PRWKVVAATLAgPLFPVLISVAMFLTTVPSV--FIYG 119
                 899**************976.5688888888752577889999999988666666666666.7999888888736555444444444444444..9999 PP

     DUF3267  82 llalnaagsagDll 95 
                 +++  +ag+  Dl+
  EHT99207.1 120 FVLTAMAGALADLW 133
                 ************98 PP

>> Tail_VII  Inovirus G7P protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0015       6.9      12      30 ..      56      74 ..      54      78 .. 0.90
   2 ?    3.5   0.1     0.015        67      16      33 ..     114     131 ..     107     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
    Tail_VII 12 ticiglVlvWFvLGrlAGs 30
                t++i +  + F LG + G+
  EHT99207.1 56 TGQIAVGTILFQLGMIPGG 74
                89****9999******998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.015
    Tail_VII  16 glVlvWFvLGrlAGsvAG 33 
                 ++ +  FvL  +AG  A 
  EHT99207.1 114 SVFIYGFVLTAMAGALAD 131
                 677888********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1356.43
//
Query:       EHT99208.1  [L=44]
Description: hypothetical protein CKS_5316 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.7   0.1       0.27   11.2   0.1    1.3  1  LBP_C     Lacto-N-biose phosphorylase C-terminal domain


Domain annotation for each model (and alignments):
>> LBP_C  Lacto-N-biose phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.5e-05      0.27       1      14 [.      22      35 ..      22      39 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.5e-05
       LBP_C  1 wysdNvnvEvayYp 14
                + ++++++E+a+Y+
  EHT99208.1 22 YQTKDLDCECAFYE 35
                67899********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 340.33
//
Query:       EHT99209.1  [L=102]
Description: hypothetical protein CKS_5317 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 903.66
//
Query:       EHT99210.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-98  327.6   2.6    6.2e-97  324.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.5e-16   59.1   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.5   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.1  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.4    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  324.4   0.0  7.6e-100   6.2e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT99210.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 324.4 bits;  conditional E-value: 7.6e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99210.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99210.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99210.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99210.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99210.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99210.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99210.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99210.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99210.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99210.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99210.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99210.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99210.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99210.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT99210.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99210.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99210.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99210.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT99210.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99210.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99210.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT99210.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99210.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99210.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99210.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99210.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99210.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99210.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99210.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT99210.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99210.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99210.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1051  (0.0586201); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 3651.16
//
Query:       EHT99211.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHT99211.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 866.49
//
Query:       EHT99212.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99212.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99212.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99212.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99212.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 899.14
//
Query:       EHT99213.1  [L=98]
Description: hypothetical protein CKS_5321 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-13   51.4   0.0    1.4e-13   51.2   0.0    1.0  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0     8e-18   1.4e-13       1      89 [.       4      90 ..       4      91 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 8e-18
                EEEEHHHHHHHHHHHHHHH.CC-H.HHHHHHHHHHHHHHHHHHHTTTSEECTSTCCTTEEEEEECTEEEEEEEETSTTEEEEEEEEEHHHH CS
  ParE_toxin  1 vrltprAlkdlkkiadyia.rdgp.aakrfldaleealellaenpalgrprrelglkglrririgdyriiYriddeelvvvilrvlhrsed 89
                v+ltp+A++dl++i++y   ++g  +a++++d l++ ++ll  + ++g  ++elg+ g++ ++ ++++i++  ++e  v+ ++rvl++ +d
  EHT99213.1  4 VKLTPKAEDDLEAIWHYGWqHFGEgQADSYIDHLSAVFQLLG-DHHIGTRCPELGE-GIYALPSERHVIYFL-QTEAVVI-VIRVLSQHQD 90
                799*******************************99998887.66789999****8.***************.5565555.*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 788.40
//
Query:       EHT99214.1  [L=88]
Description: hypothetical protein CKS_5322 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-20   71.5   0.1    6.8e-20   71.3   0.1    1.1  1  ParD_antitoxin  Bacterial antitoxin of ParD toxin-antitoxin t
      0.002   18.0   4.0     0.0022   17.8   1.2    2.1  2  RHH_1           Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> ParD_antitoxin  Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.1   7.6e-24   6.8e-20       1      76 [.       1      78 [.       1      83 [. 0.92

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 7.6e-24
                    XXX-EEE---HHHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHCT-EESS--HHHHHHHCC CS
  ParD_antitoxin  1 mskntsvvLgehfsafidsqvaaGrYgsaseviraaLrLLeer..etklkaLreaLeegeqsGeaepfDldafleeks 76
                    m++   v Lg+    fi+s +a+G Y++ sevir +LrLL e+  e++l+aLr++L eg  sGe++ ++ dafl++ +
      EHT99214.1  1 MARTMTVDLGDELREFIESLIASGDYRTQSEVIRESLRLLREKqaESRLQALRDLLAEGLSSGEPQTWEKDAFLQKVK 78
                    789999**********************************88644889**************************8765 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.2   2.5e-07    0.0022       3      39 .]       6      43 ..       5      43 .. 0.94
   2 ?    1.7   0.2      0.03   2.7e+02      18      36 ..      41      59 ..      40      61 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-07
                EEEEEHHHHHHHHHHHHHHT.SSHHHHHHHHHHHHHHH CS
       RHH_1  3 sirldeellerLdelarrrg.rSrSelIReAlreyler 39
                ++ l +el e ++ l++ ++ r++Se+IRe lr ++e+
  EHT99214.1  6 TVDLGDELREFIESLIASGDyRTQSEVIRESLRLLREK 43
                688999999************************99986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.03
                HHHHTSSHHHHHHHHHHHH CS
       RHH_1 18 arrrgrSrSelIReAlrey 36
                ++++  Sr +++R++l+e 
  EHT99214.1 41 REKQAESRLQALRDLLAEG 59
                5556668888899988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 718.11
//
Query:       EHT99215.1  [L=144]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-28   97.7   0.0    8.1e-28   97.3   0.0    1.1  1  IstB_IS21  IstB-like ATP binding protein
     0.0012   18.8   0.0     0.0014   18.5   0.0    1.1  1  Bac_DnaA   Bacterial dnaA  protein


Domain annotation for each model (and alignments):
>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0     9e-32   8.1e-28      70     165 ..       2      97 ..       1     102 [. 0.97

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 9e-32
   IstB_IS21  70 eavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsiiitsnlpfaewdevlgdatlat 165
                 +a+ ag++vlf+ +++L+++l +a+ +++l+r+l++l  +++lilD++g+lp++++ea+l+f+++++rye++sii+tsn+ fa+w+e++gd++la 
  EHT99215.1   2 KAADAGHRVLFMPLDRLIATLMKAKLENRLERQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYENASIILTSNKGFADWGEMFGDNVLAF 97 
                 7999*****************************************************************************************995 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07    0.0014      63     139 ..       6      81 ..       1      89 [. 0.90

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-07
                 SSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-SEEEEE-GGGGTT-HHHHHHHHHHHHHHHTTT-EEEEEESS CS
    Bac_DnaA  63 pelrvvYltaeeFlnelvkalrdkkaeefkeklrkvDvLliDDiqflagkektqeelfhtfnalleegkqvvlssDr 139
                   +rv+++  ++ +++l+ka  ++++e+  ++l  + vL++D+i +l    +    +f ++n  +e++  ++l+s++
  EHT99215.1   6 AGHRVLFMPLDRLIATLMKAKLENRLERQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYENA-SIILTSNK 81 
                 5789***********************999*********************9***********99876.57788776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1077.90
//
Query:       EHT99216.1  [L=53]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-11   44.1   0.0      2e-11   44.0   0.0    1.0  1  IstB_IS21  IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.054   13.1   0.0      0.054   13.1   0.0    1.0  1  DUF2240    Uncharacterized protein conserved in archaea (DUF2


Domain annotation for each model (and alignments):
>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   2.2e-15     2e-11      11      58 ..       5      52 ..       3      53 .] 0.97

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 2.2e-15
   IstB_IS21 11 aklpaqktledidfraarsldkrkvkeLatlsfiekkenivllGpsGv 58
                a+lp  ktle++df+++ s+d++ v+eLa+l+f+e+ en++llGp+G 
  EHT99216.1  5 ARLPWLKTLEQFDFTFQLSIDRKVVRELAGLAFVERCENVILLGPPGL 52
                89********************************************95 PP

>> DUF2240  Uncharacterized protein conserved in archaea (DUF2240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     6e-06     0.054      16      52 ..      11      47 ..       1      50 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6e-06
     DUF2240 16 dklsesdfvfalsldrkwlspdqakklldraeeegLl 52
                + l++ df f ls+drk ++     ++++r+e+  Ll
  EHT99216.1 11 KTLEQFDFTFQLSIDRKVVRELAGLAFVERCENVILL 47
                679999**************99999999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 446.58
//
Query:       EHT99217.1  [L=423]
Description: putative outer membrane adhesion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00023   21.0   0.0    0.00048   20.0   0.0    1.5  1  F-box-like    F-box-like
      0.003   17.4   0.0     0.0063   16.4   0.0    1.5  1  F-box_4       F-box
     0.0052   16.6   0.0      0.013   15.4   0.0    1.6  1  F-box         F-box domain
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.02   14.8   0.0    1.3  1  F-box-like_2  F-box-like domain
       0.15   12.4   0.0       0.41   11.0   0.0    1.7  1  PRANC         PRANC domain
       0.35    9.8   4.7       0.49    9.3   4.7    1.1  1  DUF5585       Family of unknown function (DUF5585)


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.6e-07   0.00048       2      27 ..     274     299 ..     273     299 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.6e-07
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalV 27 
                  +LP+E L qIF yL+ ++L ++++V
  EHT99217.1 274 TDLPNEMLEQIFNYLDYTSLKSISAV 299
                 58********************9998 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.1e-06    0.0063       2      39 ..     270     308 ..     269     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.1e-06
     F-box_4   2 edsLssLPlevlqhiaslLDsfsLsqLslvsk.llrevc 39 
                 +++L++LP e+l++i ++LD +sL ++s v + ++ +++
  EHT99217.1 270 QRELTDLPNEMLEQIFNYLDYTSLKSISAVENpRISAIA 308
                 5789***********************988531555555 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.2e-06     0.013       4      28 ..     274     298 ..     272     299 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-06
                 HHS-HHHHHHHHHTS-HHHHHHHCT CS
       F-box   4 srLPsevlrhILerLplsdllalrr 28 
                  +LP+e l++I+ +L+ ++l +++ 
  EHT99217.1 274 TDLPNEMLEQIFNYLDYTSLKSISA 298
                 69*****************977775 PP

>> F-box-like_2  F-box-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   6.7e-06      0.02       5      40 ..     258     291 ..     255     387 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
  F-box-like_2   5 acklwatnaapkfrsltllDlPdellelifkgCkdp 40 
                   a+k wa+ a  +f++ +l DlP+e+le if++    
    EHT99217.1 258 AAKQWAERA--AFQQRELTDLPNEMLEQIFNYLDYT 291
                   667787766..5899999*************97633 PP

>> PRANC  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.41      70      96 ..     271     297 ..     262     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
       PRANC  70 slWnlLPiEIkykIleyLndkdLknll 96 
                   ++ LP+E   +I++yL+ ++Lk+++
  EHT99217.1 271 RELTDLPNEMLEQIFNYLDYTSLKSIS 297
                 67899*******************996 PP

>> DUF5585  Family of unknown function (DUF5585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.7   0.00016      0.49     142     210 ..     150     220 ..     120     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
     DUF5585 142 tnasvsartaiassvaaassi..PttaassavstlvpvsgtvtsavatghPslstalaqvpssssaartaa 210
                 t  ++    aia svaaa s+   tt+ + ++  l  ++g+++ a+  ++P +s +l  v+ ++  a+ aa
  EHT99217.1 150 TGGAALGAIAIAGSVAAAWSAasTTTLVVGGMGLLADATGIASGATEDSNPQASSVLGWVSMATGIAGMAA 220
                 5556666788999998875441145677888899999************************9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3545.18
//
Query:       EHT99218.1  [L=433]
Description: putative outer membrane adhesion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.44    9.4   5.2       0.63    8.9   5.2    1.1  1  DUF5585   Family of unknown function (DUF5585)


Domain annotation for each model (and alignments):
>> DUF5585  Family of unknown function (DUF5585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.2   3.5e-05      0.63     132     207 ..     140     217 ..     116     229 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 3.5e-05
     DUF5585 132 lsapraevsrtnasvsartaiassvaaassi..PttaassavstlvpvsgtvtsavatghPslstalaqvpssssaar 207
                 + a  + v  t  ++ a  aia svaaa s+   tt+ + ++  l  ++g+++ a+  ++P +s +l  v+ ++  a+
  EHT99218.1 140 IVAGVTGVIVTGGAALAAIAIAGSVAAAWSAasTTTLVVGGMGLLADATGIASGATEDSNPQASSVLGWVSMATGIAG 217
                 46677788889999999999**9999885541146677888999999********************99998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3577.06
//
Query:       EHT99219.1  [L=50]
Description: hypothetical protein CKS_5328 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 444.88
//
Query:       EHT99220.1  [L=401]
Description: putative outer membrane adhesion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3207.46
//
Query:       EHT99221.1  [L=1228]
Description: hypothetical protein CKS_5332 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-27   93.0  64.4    4.1e-08   33.6   1.7   16.3 16  RHS_repeat  RHS Repeat


Domain annotation for each model (and alignments):
>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.39     7e+03       4      13 ..     159     169 ..     157     172 .. 0.74
   2 ?   -3.8   0.0         1   1.8e+04      22      30 ..     322     330 ..     317     337 .. 0.64
   3 !   13.6   0.0     4e-06     0.071       5      32 ..     567     594 ..     566     600 .. 0.83
   4 !    5.3   0.3    0.0016        29       3      27 ..     613     637 ..     613     641 .. 0.87
   5 ?   -2.2   2.8      0.37   6.6e+03       4      34 ..     728     753 ..     727     761 .. 0.69
   6 !   33.6   1.7   2.3e-12   4.1e-08       1      38 []     769     806 ..     769     806 .. 0.97
   7 !    8.4   0.7   0.00017       3.1       1      22 [.     844     864 ..     829     868 .. 0.84
   8 !    7.7   0.0   0.00028         5      10      32 ..     874     897 ..     872     903 .. 0.87
   9 !    4.2   0.0    0.0035        63       4      30 ..     890     917 ..     889     919 .. 0.84
  10 !    4.3   0.0    0.0033        59      12      34 ..     964     986 ..     959     990 .. 0.82
  11 !    9.7   0.0   6.9e-05       1.2       3      36 ..     976    1010 ..     975    1012 .. 0.74
  12 !    7.6   0.0    0.0003       5.4      18      37 ..    1016    1037 ..    1010    1038 .. 0.87
  13 !    8.8   0.0   0.00013       2.4       4      31 ..    1048    1082 ..    1045    1087 .. 0.81
  14 !   14.4   0.2   2.3e-06     0.042      18      33 ..    1101    1116 ..    1095    1123 .. 0.83
  15 !   10.1   1.0   5.1e-05      0.91       1      32 [.    1105    1140 ..    1105    1144 .. 0.78
  16 !    6.9   5.3    0.0005         9       1      29 [.    1174    1202 ..    1157    1212 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.39
  RHS_repeat   4 aG.rLtevtdp 13 
                 +G rLt+v+d+
  EHT99221.1 159 NGkRLTSVSDE 169
                 56589999886 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1
  RHS_repeat  22 YDaqGrltt 30 
                  D qG++++
  EHT99221.1 322 HDKQGNPLS 330
                 577777754 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 4e-06
  RHS_repeat   5 GrLtevtdpsGrvttYtYDaqGrlttlT 32 
                 G L + tdp G+++  +YD +Gr+++ T
  EHT99221.1 567 GLLFSETDPLGVTVKHEYDLLGRIVSQT 594
                 666688******************9855 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0016
  RHS_repeat   3 aaGrLtevtdpsGrvttYtYDaqGr 27 
                 ++G +t++td +G++ +   D++Gr
  EHT99221.1 613 DNGPVTTQTDTTGNQLRILFDSAGR 637
                 6899***********8877788888 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 0.37
  RHS_repeat   4 aGrLtevtdpsGrvttYtYDaqGrlttlTdp 34 
                 aG+ t++   +G+v + + D +  l  lTd+
  EHT99221.1 728 AGNTTTI---TGSV-ATSFDTASYLA-LTDT 753
                 6777777...9977.67999999993.5554 PP

  == domain 6  score: 33.6 bits;  conditional E-value: 2.3e-12
  RHS_repeat   1 YDaaGrLtevtdpsGrvttYtYDaqGrlttlTdpdGrt 38 
                 +D  G+L++ td+ G+vt  tYDa+Gr++t T pdG++
  EHT99221.1 769 WDGWGQLRRETDERGNVTERTYDAFGRVLTQTLPDGSV 806
                 89**********************************85 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.00017
  RHS_repeat   1 YDaaGrLtevtdpsGrvttYtY 22 
                 +D++GrLt ++   Gr+ttY Y
  EHT99221.1 844 FDSLGRLTKQVSG-GRTTTYVY 864
                 6999999999555.99999998 PP

  == domain 8  score: 7.7 bits;  conditional E-value: 0.00028
  RHS_repeat  10 vtdpsGrvttYtY.DaqGrlttlT 32 
                 vt+psG + +YtY  ++G++++  
  EHT99221.1 874 VTLPSGKQLQYTYiPELGNVVSSV 897
                 69******************9755 PP

  == domain 9  score: 4.2 bits;  conditional E-value: 0.0035
  RHS_repeat   4 aGrLtevtdpsGrvttYtYDaq.Grltt 30 
                 +G++++ + ++ ++ t++YD + Grl++
  EHT99221.1 890 LGNVVSSVVADDVTQTFSYDKRtGRLLQ 917
                 688888888999999*****99999964 PP

  == domain 10  score: 4.3 bits;  conditional E-value: 0.0033
  RHS_repeat  12 dpsGrvttYtYDaqGrlttlTdp 34 
                 d++G+   Y+ D+ Gr+t+l+d+
  EHT99221.1 964 DITGSKMVYSRDEYGRITALIDG 986
                 66776644************996 PP

  == domain 11  score: 9.7 bits;  conditional E-value: 6.9e-05
  RHS_repeat    3 aaGrLtevtdpsGrv.ttYtYDaqGrl..ttlTdpdG 36  
                  + Gr+t+   ++G    +++YD++Gr+  +t+ +++G
  EHT99221.1  976 EYGRITAL--IDGELqASFEYDELGRMhkQTVKNTGG 1010
                  56777777..44444236**********999999999 PP

  == domain 12  score: 7.6 bits;  conditional E-value: 0.0003
  RHS_repeat   18 ttYtYDaqGrl..ttlTdpdGr 37  
                  t ++YD++Gr   +t+Td +G+
  EHT99221.1 1016 TELEYDDFGREikQTVTDSAGT 1037
                  789********99999999996 PP

  == domain 13  score: 8.8 bits;  conditional E-value: 0.00013
  RHS_repeat    4 aGrLtevtdp.sGrvtt......YtYDaqGrlttl 31  
                  +G L +++++ +G  ++      ++YDa++rl+++
  EHT99221.1 1048 NGLLESKSLAaTGAADSinrnemFEYDARNRLVHY 1082
                  78888886666888876777889*********997 PP

  == domain 14  score: 14.4 bits;  conditional E-value: 2.3e-06
  RHS_repeat   18 ttYtYDaqGrlttlTd 33  
                  +tY+YDa+++lt+++ 
  EHT99221.1 1101 VTYQYDALNNLTAVIS 1116
                  69**********9875 PP

  == domain 15  score: 10.1 bits;  conditional E-value: 5.1e-05
  RHS_repeat    1 YDaaGrLtev..tdpsGrvt..tYtYDaqGrlttlT 32  
                  YDa+++Lt+v  t ++ +++  tY Y  ++ +t+lT
  EHT99221.1 1105 YDALNNLTAVisTFADDSTDtmTYVYGNRNDPTQLT 1140
                  9*********99666666642469998888888888 PP

  == domain 16  score: 6.9 bits;  conditional E-value: 0.0005
  RHS_repeat    1 YDaaGrLtevtdpsGrvtt...YtYDaqGrlt 29  
                  YD +GrL +v   +G   t   Y+YDa +rl+
  EHT99221.1 1174 YDGLGRLNSV---AGENLTgghYHYDAGNRLV 1202
                  5556665444...3322222338888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 8388.51
//
Query:       EHT99222.1  [L=1130]
Description: hypothetical protein CKS_5334 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0022   17.9   5.5      0.056   13.3   0.7    4.1  3  Big_2     Bacterial Ig-like domain (group 2)
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.19   11.7   0.0    1.4  1  AAA_5     AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Big_2  Bacterial Ig-like domain (group 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.025   2.2e+02      51      68 ..     129     146 ..     123     153 .. 0.83
   2 !   13.3   0.7   6.3e-06     0.056       3      63 ..     480     537 ..     478     550 .. 0.91
   3 ?    1.8   0.1     0.026   2.3e+02      21      54 ..     583     610 ..     562     617 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.025
                 CCEECCCSSEEEEEEEEE CS
       Big_2  51 tGlVtavaaGkatitats 68 
                  G+++++++Gk+ti +t 
  EHT99222.1 129 YGSGKVSEDGKVTIDFTE 146
                 589999********9996 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.3e-06
                 SEEEEEEC-CEEETT-EEEEEEEEESTT-S---EEEEECC-SSEEEETCCEECCCSSEEEE CS
       Big_2   3 tsvtvsptevtvkkgatqqltvevtpssasdkkvtwtssngsvAtVsatGlVtavaaGkat 63 
                 t+ t++p e ++  g+t+q+++     sa  +  +w++  + v++++++Gl ta a+G+ t
  EHT99222.1 480 TTLTITPDESVIGCGQTLQFSASLSDGSAP-QGLVWSV--DGVGSIDSNGLYTAPATGDIT 537
                 7889*******************9999988.6999*99..67****************876 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.026
                 EEEEEEESTT-S---EEEEECC-SSEEEETCCEE CS
       Big_2  21 qltvevtpssasdkkvtwtssngsvAtVsatGlV 54 
                 q+t   + +++  kkvtwt     vA Vs  G++
  EHT99222.1 583 QFT--AYLAGSAEKKVTWTL----VADVSDAGSI 610
                 344..4445555689****9....7777766654 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05      0.19      29     112 ..     107     192 ..      99     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
                 EEE--TT--HHHHH--B--............--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---...... CS
       AAA_5  29 yvqltrdtteedlkgrreik...ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkakndd.lle 112
                 +vq  r+t++++    + i+   +++++ +d++++  ++e++i+ +++++ ++ +v+ ++++ l+ + ++     ++ k++ ++  l+
  EHT99222.1 107 VVQWDRYTPASKYGLNITIElkyGSGKVSEDGKVTIDFTEAQIFKIEGLNDLPADVILAFQNFLNSNPMS--YTLGELKHDDNQeTLY 192
                 56666666666533333333558999999****************************************9..5555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 8112.96
//
Query:       EHT99223.1  [L=147]
Description: lysozyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-28   98.2   0.0    4.3e-28   97.9   0.0    1.1  1  Phage_lysozyme  Phage lysozyme
  ------ inclusion threshold ------
       0.15   10.8   0.0       0.19   10.4   0.0    1.1  1  DDE_Tnp_Tn3     Tn3 transposase DDE domain


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   4.8e-32   4.3e-28       1     108 [.      28     133 ..      28     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 4.8e-32
                     CEEEETTBCSSSCCTTHH-EHHHHHHHHHHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCHHHHHHHGGGSSE CS
  Phage_lysozyme   1 ywtigiGekgkdvsphkritkeeaagryekdlktaerkikqyikvkdfepnqqdalvslafnvGkgGkrkastllralnagdwkkacsairkslk 95 
                     +wtig+G ++++v+p+  it+eea+ +++kd++ +e  +++++kv ++++nq+dalvs++fn G+ G+  +stllr ln gd+ +a+++++++++
      EHT99223.1  28 VWTIGYG-HTHKVQPGDCITQEEAEHLLAKDIQLFEGVVNRLVKV-SLTQNQFDALVSFVFNLGE-GNLSSSTLLRHLNSGDYLSAANELPRWVN 119
                     7******.************************************9.******************9.8**************************** PP

                     E.TCCCHHHHHHHH CS
  Phage_lysozyme  96 a.GkelnglknRre 108
                     a Gk+  gl++Rre
      EHT99223.1 120 AgGKQIPGLVRRRE 133
                     *************7 PP

>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.2e-05      0.19     216     263 ..      58     105 ..      49     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.2e-05
  DDE_Tnp_Tn3 216 ykeldalltkkinldlIeehwddllrlaaSiklgkvsastilrkLssy 263
                  ++ ++ ++++ ++++l ++++d l+  +  + +g+ s+st+lr L+s 
   EHT99223.1  58 IQLFEGVVNRLVKVSLTQNQFDALVSFVFNLGEGNLSSSTLLRHLNSG 105
                  56677889999**********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1273.26
//
Query:       EHT99224.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99224.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99224.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99224.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99224.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 877.37
//
Query:       EHT99225.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99225.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 998.78
//
Query:       EHT99226.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-97  325.7   3.5    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.5   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.1  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.5    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT99226.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99226.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99226.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99226.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99226.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99226.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99226.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99226.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99226.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99226.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99226.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99226.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99226.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99226.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99226.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT99226.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99226.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99226.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99226.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT99226.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99226.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99226.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT99226.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99226.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99226.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99226.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99226.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99226.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99226.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99226.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT99226.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99226.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99226.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1048  (0.0584528); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.36
# Mc/sec: 4347.43
//
Query:       EHT99227.1  [L=42]
Description: hypothetical protein CKS_5340 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.024   14.5   0.0    1.0  1  DUF1967   Domain of unknown function (DUF1967)


Domain annotation for each model (and alignments):
>> DUF1967  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.4e-06     0.024      14      47 ..       8      41 ..       4      42 .] 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-06
                EE-HHHHHHHTTEEE-TGGGHHHHHHHHHHTTHH CS
     DUF1967 14 VeGekierlvkqtnfeneeavrrfarrLkklGve 47
                V ++ +++ ++ +n+ + + +++far +++ G++
  EHT99227.1  8 VLSSGVDKQFRHINVAEADHFKQFARLIARAGID 41
                667789**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 334.16
//
Query:       EHT99228.1  [L=143]
Description: hypothetical protein CKS_5341 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.8   0.0     0.0023   18.0   0.0    1.4  1  DUF1419   Protein of unknown function (DUF1419)


Domain annotation for each model (and alignments):
>> DUF1419  Protein of unknown function (DUF1419)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-07    0.0023      32      87 ..      47     106 ..      32     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-07
     DUF1419  32 ereeaddsalyaGeWfeiseaehdymleilPPl.flrg...dmfalrefltgsvtsvffa 87 
                 ++ ++++++ y+  W ei+ea++   +e lPP+ + rg   + f    f  g vt++f+ 
  EHT99228.1  47 TQVQEKQNNGYRRPWAEITEARYIDQMETLPPVdWCRGyggESFKSMVFTGGDVTAIFVR 106
                 4567788999**********************7799954448999999*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1169.37
//
Query:       EHT99229.1  [L=425]
Description: TraD family conjugative transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-72  243.6   0.0    3.8e-72  243.3   0.0    1.1  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    5.5e-20   71.6   0.0    9.5e-20   70.9   0.0    1.4  1  TraG-D_C         TraM recognition site of TraD and TraG
    2.4e-14   53.0   0.0    3.2e-14   52.6   0.0    1.1  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra


Domain annotation for each model (and alignments):
>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3   0.0   6.4e-76   3.8e-72     145     386 .]       2     248 ..       1     248 [. 0.97

  Alignments for each domain:
  == domain 1  score: 243.3 bits;  conditional E-value: 6.4e-76
  TrwB_AAD_bind 145 eeLkellagteaaalvaeeaertaasiratlatnlevlelLa....ekgerFSireWleeede.sgwlfltskaeqrallrpllsawldlaikall 235
                    ++L ++la+t +a+lv+e+ e+ta sir+++ +++++l++L+     ++ +F ireW+++e+  s+wlf++ +a++r+ +rpl+s+w++la   l 
     EHT99229.1   2 KNLRDYLANTPSANLVEEKIEKTAISIRSVVTNYAKALRYLQglddGTKPPFTIREWMTQERYdSSWLFISTQARHRKSVRPLISLWVSLATLMLQ 97 
                    7899**************************************995444459**********99899****************************** PP

  TrwB_AAD_bind 236 slpesrerrlWfflDElpaLgrleelksllaegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvsdaetAeelsellGeqeverst 331
                    s+ e+ +rr+Wf++DE+p+L+r++el++ lae+RkfGg++vlg+q++aql +vYG++ a+si++l+nt+++ r ++ae+A+ ++e lG+q  ++ +
     EHT99229.1  98 SMGENSDRRVWFIIDEVPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPSAEMAKVVEEELGNQRKRKIR 193
                    ************************************************************************************************ PP

  TrwB_AAD_bind 332 eslsygannsrdgvslgrqrevrpvVlaselqnlpdlegylklpeglpvarvklp 386
                    e+ syg  ++rdgvslg+ +  +p+V  +++++lp+l+ y++lp+++pv+r+kl+
     EHT99229.1 194 EQNSYGLDQVRDGVSLGKDEVNNPIVDYEQIMRLPNLNFYVRLPGEYPVVRLKLK 248
                    ****************************************************985 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.6e-23   9.5e-20       1     125 [.     106     228 ..     106     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.6e-23
    TraG-D_C   1 pvlfllDEfanlgkipdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklflgvndeetaeelSkllGektvesestsssssgsggs 99 
                 +v f++DE+++l +ip+l e l+++r+ g ++vl +Q++aql+ +Yg+e a++i++ +++++++++ ++e a+ + + lG+++  + ++++s +   ++
  EHT99229.1 106 RVWFIIDEVPSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPSAEMAKVVEEELGNQRKRKIREQNSYGL--DQ 202
                 789*****************************************************************************999765444444333..33 PP

    TraG-D_C 100 sessssssqseekrpLltpdeirrlp 125
                  +   s  + e++ p++  ++i+rlp
  EHT99229.1 203 VRDGVSLGKDEVNNPIVDYEQIMRLP 228
                 3444456677779************9 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   5.3e-18   3.2e-14     223     458 ..      24     261 ..       3     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 5.3e-18
  T4SS-DNA_transf 223 trsSvlgtakselalyadplvrnatSksdFdlrdlr....rkkvsvyvivnpkdlevvapllrlffnmvvellkrklpnkderpkevlflLDEf 312
                      t  S+ ++++ + + +++ +     +k  F +r+ +     +   +++ +++   + v+pl+ l + + + +l+   +n d+r   v f++DE+
       EHT99229.1  24 TAISIRSVVTNYAKALRYLQGLDDGTKPPFTIREWMtqerYDSSWLFISTQARHRKSVRPLISLWVSLATLMLQSMGENSDRR---VWFIIDEV 114
                      5555555555555555555555555556666666654333456679*********************8888888888888888...******** PP

  T4SS-DNA_transf 313 pslGkleileealatiagYgirltlIiQsisqlketYgkegaksilsnsavvivfaasndeetaeyiSkllGktTvek..estskstdakgksr 404
                      psl  ++ l e+la  +++g  ++l +Q+++ql   Yg+e aksi +    +++   +   e a+ + ++lG+   +k  e+ s+  d+     
       EHT99229.1 115 PSLQRIPELAETLAEARKFGGCFVLGMQNMAQLVHVYGRELAKSIFDLMNTRMYGRSPS-AEMAKVVEEELGNQRKRKirEQNSYGLDQVRDGV 207
                      **********************************************9988888887777.*************976653367777677777778 PP

  T4SS-DNA_transf 405 srsisekqRaLltPdevlrmdddeeivlikgqkPikakkalYykdedfkaelak 458
                      s  + e++ + +  ++++r+++ +  v + g+ P+   k++Y + ++ +a l++
       EHT99229.1 208 SLGKDEVNNPIVDYEQIMRLPNLNFYVRLPGEYPVVRLKLKYRSLKKRQAGLIE 261
                      889*********************999999999999999999888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3682.38
//
Query:       EHT99230.1  [L=200]
Description: TraI family DNA-nicking and unwinding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   18.6   0.5     0.0018   18.1   0.5    1.2  1  AAA_30    AAA domain


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   9.8e-08    0.0018      17     122 ..      56     161 ..      42     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.8e-08
      AAA_30  17 gdrvavltGpAG.tGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaek 114
                 +d ++++++p G +G   + ++l+ ++ a+g++v +lA++++ A  La++ +++ + i +    l g  +l+p++ li+  a  ++ k++  ll +a++
  EHT99230.1  56 KDALVLMNAPSGvAGIRELTAQLAGIAGANGRDVQVLASSAERAISLAKSDDLRERIISRQH-VLSGDFHLKPQSTLIIEGAERLGLKETLVLLGEARA 153
                 3447777777774455666777888888999*****************99999888887766.5555589***************************** PP

      AAA_30 115 agakvilv 122
                 ++a+++++
  EHT99230.1 154 QDAQLVFL 161
                 ****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1467.64
//
Query:       EHT99231.1  [L=176]
Description: ATP-dependent exonuclease/helicase superfamily I protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1420.55
//
Query:       EHT99232.1  [L=262]
Description: putative DSBA oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-17   63.9   0.0    4.7e-17   62.6   0.0    1.6  2  Thioredoxin_4  Thioredoxin
    3.4e-12   46.0   1.9    8.5e-12   44.7   1.9    1.7  1  ScsC_N         Copper resistance protein ScsC N-terminal doma
    1.5e-10   41.2   1.2      3e-09   36.9   1.2    2.3  1  DSBA           DSBA-like thioredoxin domain
    5.8e-05   23.5   0.0    0.00015   22.2   0.0    1.7  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.016   15.2   0.2       0.29   11.1   0.1    2.4  2  Thioredoxin    Thioredoxin
       0.04   13.8   0.0       0.11   12.4   0.0    1.7  1  DUF3197        Protein of unknown function (DUF3197)


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.93   2.8e+03      69      98 ..      41      70 ..      27      88 .. 0.60
   2 !   62.6   0.0   1.6e-20   4.7e-17       4     146 ..      88     228 ..      85     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.93
                   HHHTT--TTHHHHHHHHHHHHTHHHHTTS- CS
  Thioredoxin_4 69 aarcageespeaflaikallysqqeewaes 98
                   +a  ++  +pe   ++++ l+ qq++ +++
     EHT99232.1 41 IAADYLVAHPEILVTVSQKLQVQQQQRQQT 70
                   455555556777777777777777777776 PP

  == domain 2  score: 62.6 bits;  conditional E-value: 1.6e-20
                    SSEEES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---S..TTTHHHHHHHTT--TT.HHHHHHHHHHHHTH.HHHT CS
  Thioredoxin_4   4 tdiviGnpdApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkek..eslkaamaarcagees.peaflaikallysq.qeew 95 
                    +++++G  +A+v vie+ d++C  C  f+ e+ek+++    + +v++i+++ p+ ++    sl+aa++   + +e+ p+a+ +++ + y +   e 
     EHT99232.1  88 DTPAFGPDNAKVAVIEFFDYQCVFCSGFAPELEKVMKA---QPDVRYIFKEWPIFGNRweVSLQAAQLGLSVWKEKgPQAYVTYHNAVYATgHNEG 180
                    57899********************************9...6**********887666457********999888669999999998887735566 PP

                    TS-HHHHH.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEE CS
  Thioredoxin_4  96 aeslkelaaealdkdekfeacleeekldalveaeskeakkagiestPtfii 146
                    + +++++  +a++   +  +  e+ ++ +l+e++s+ a+++g+++tP +i+
     EHT99232.1 181 KLTADDIRGAAVK---AGLNTPERADNTPLLEKNSNLAEALGLTGTPGIIV 228
                    6667777744444...3333458999************************9 PP

>> ScsC_N  Copper resistance protein ScsC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   1.9   2.9e-15   8.5e-12       1      33 [.      34      66 ..      34      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 2.9e-15
      ScsC_N  1 QkaaiekivrdYLleNPEiLvEAlqaLqkkqaa 33
                Q+++i++i  dYL+++PEiLv ++q+Lq +q++
  EHT99232.1 34 QETRIGEIAADYLVAHPEILVTVSQKLQVQQQQ 66
                9*******************************8 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   1.2     1e-12     3e-09       2     174 ..     101     232 ..     100     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1e-12
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHHH CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeg 100
                 v+effD++C +C  ++++lek+ +++pdv+  +++ +++g+                        r                + s++aa+l l +++e+
  EHT99232.1 101 VIEFFDYQCVFCSGFAPELEKVMKAQPDVRYIFKEWPIFGN------------------------R---------------WEVSLQAAQLGLSVWKEK 160
                 89***************************************........................3...............354555555555555554 PP

                 GHHHHHHHHHHHHHTSSS-...TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEE...T CS
        DSBA 101 laekvvrelfealwsegqa...itddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvv...d 174
                    +++ ++++a++  g +   +t d +++ +a kaGl++       e  + +  +++n ++a++lg+tG+P ++v    
  EHT99232.1 161 -GPQAYVTYHNAVYATGHNegkLTAD-DIRGAAVKAGLNT------PERADNTPLLEKNSNLAEALGLTGTPGIIVmpvS 232
                 .3366666677766655441114444.4**********66......667788899******************9994443 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   4.9e-08   0.00015       4     107 ..      96     253 ..      94     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.9e-08
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkel....ddvtvrvllfp.......lkpsfepkavaiwcakekkkafkd....................... 65 
                    n k  ++ f d +C +C  +  el+++    +dv+ +    p       ++ ++ +   ++w++k ++  + +                       
     EHT99232.1  96 NAKVAVIEFFDYQCVFCSGFAPELEKVmkaqPDVRYIFKEWPifgnrweVSLQAAQLGLSVWKEKGPQAYV-Tyhnavyatghnegkltaddirga 190
                    6788899999**********999999999889999998888898888886666778888899999987333.2588888899999999999***** PP

  Thioredoxin_2  66 .................ieenvelarkygvrgtPtivfldgk....eivarlpGyvpaeelea 107
                                     +e+n+ la+++g++gtP i++ + +      +++ p +v+ae+l+a
     EHT99232.1 191 avkaglntperadntplLEKNSNLAEALGLTGTPGIIVMPVSgatpATITVFPEAVTAEKLQA 253
                    ***********************************8876655566666667777777777766 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.8e-05      0.29      18      49 ..      97     128 ..      92     136 .. 0.87
   2 ?    1.1   0.0      0.13   3.8e+02      60     102 ..     210     256 ..     208     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
                  SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT CS
  Thioredoxin  18 kklvlveFyApwCghCkalaPeleklaeelkd 49 
                  +k  ++eF+   C  C  +aPelek++++  d
   EHT99232.1  97 AKVAVIEFFDYQCVFCSGFAPELEKVMKAQPD 128
                  6889**********************998774 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
                  TSHHHHHHTT-SSSSEEEEEETTE....EEEEEESS-HHHHHHHHHH CS
  Thioredoxin  60 enedlakkyevegiPtlklfkngk....evkkyegarekeklaaflk 102
                  +n++la+ ++ +g P +++++ +     ++  + +a ++ekl+a ++
   EHT99232.1 210 KNSNLAEALGLTGTPGIIVMPVSGatpaTITVFPEAVTAEKLQAAIR 256
                  7899999*********9999866545555556667788888887776 PP

>> DUF3197  Protein of unknown function (DUF3197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.7e-05      0.11      23      56 ..      63      95 ..      49     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
                -SSSCTS--EEEEEE-SS-EEEEEEEESTTS.TT CS
     DUF3197 23 rqdqRekAryaalleaakealltedaFGpafGpe 56
                +q+qR++ rya+ + + ++all      pafGp+
  EHT99232.1 63 QQQQRQQTRYALSVMENQDALLHD-RDTPAFGPD 95
                689************999998863.344555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2016.90
//
Query:       EHT99233.1  [L=337]
Description: replication initiation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-09   35.9   0.0    5.7e-09   35.6   0.0    1.2  1  IncFII_repA  IncFII RepA protein family


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   3.2e-13   5.7e-09     111     226 ..     166     288 ..      60     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3.2e-13
  IncFII_repA 111 nksitrasrlitefle..plGlvkCekvWDkilesyiPkiitlteLffvLidvskeklksakkqql..gWinkkLrekGekp....itlvearrrake 200
                  + +++r srli e +    lGl   e++WD+   s++P  +++t++ f +++v+ +kl + ++++l  + + ++L+++G  +    +    ar+    
   EHT99233.1 166 EVTVSRLSRLIEEQVRfgVLGL-ADERTWDRESRSWLPTYVYITPVGFQMLGVDMDKLFKEQEKKLrqSAEREQLIQEGVMSehddVQPHTARKCWSG 262
                  35799*******9764114444.569*************************************99933457789*****7543333888899999999 PP

  IncFII_repA 201 khikkaleyrkkkhalkkkkrkarkl 226
                  ++ ++al yr+kk a +k+ ++  kl
   EHT99233.1 263 RKRREALIYRRKKGAERKRANNLIKL 288
                  99***********9987776655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2461.01
//
Query:       EHT99234.1  [L=261]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-87  294.1   0.0    1.5e-87  293.9   0.0    1.0  1  DDE_Tnp_Tn3  Tn3 transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   0.0   8.3e-92   1.5e-87     157     389 .]       1     235 [.       1     235 [. 0.99

  Alignments for each domain:
  == domain 1  score: 293.9 bits;  conditional E-value: 8.3e-92
  DDE_Tnp_Tn3 157 vldgllrnesdlepeelatDthGysdvvFallhllgfklaPRlrdlkdq..klyrpdakadykeldalltkkinldlIeehwddllrlaaSiklgkvs 252
                  +l+gll++e++l+p+e++tDt+G+sd+vF+l++llg++++PRl+d +     ++r+d++ady+ l+++++++ + ++I  +wd+++r a S+klgkv+
   EHT99234.1   1 MLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQFSPRLADADAGasVFWRMDNDADYGVLNDIARGQSDPRKIVLQWDEMIRAAGSLKLGKVQ 98 
                  89*****************************************98876555*********************************************** PP

  DDE_Tnp_Tn3 253 astilrkLssysrqnplykAlrelGriikTlfllrYlddeelRreiqaqlnkgEsrhalaraiffgkegeirerrreeqekrlsalrLvanaivlwNt 350
                  as ++r L +++r+  l +A+ e+Gri kTl+ll+Y+dde++ r+i +qln+gEsrha+arai++g++geir+r+ ++qe++l+al+Lv+naivlwNt
   EHT99234.1  99 ASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYHRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGALGLVTNAIVLWNT 196
                  ************************************************************************************************** PP

  DDE_Tnp_Tn3 351 lylsealeelraegeevkdellarlsplawehinllGeY 389
                  +y+++al++lr++ge v+de++arlspl + hin+lG+Y
   EHT99234.1 197 IYMQAALDHLREQGESVNDEDIARLSPLCHGHINMLGHY 235
                  **************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1932.00
//
Query:       EHT99235.1  [L=829]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     8e-102  340.9   0.0   1.1e-101  340.5   0.0    1.1  1  DDE_Tnp_Tn3  Tn3 transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.5   0.0  5.9e-106  1.1e-101       1     389 []     416     808 ..     416     808 .. 0.98

  Alignments for each domain:
  == domain 1  score: 340.5 bits;  conditional E-value: 5.9e-106
  DDE_Tnp_Tn3   1 DlLlevdawtgfleafthlsgreakskdekerllaallaeGtnlGlkkmaraipglsrdqLatvnrryireetlraAnaaivnaqaklplaklWgdgt 98 
                  D+++ v+++++fl a+++l+ r+ak+++++++l+a+++a+++n G + mar ++++  + L+t+ ++y+r  +l +An++i++a++ lp++ l+  + 
   EHT99235.1 416 DVFRFVNNQCRFLPAMKPLQPRYAKKEADADSLMAVIVAQAMNHGNHVMAR-TSDIPFHVLETTYEQYLRLASLLTANDCITDAIEVLPVFPLYSFDP 512
                  8999***********************************************.******************************************9877 PP

  DDE_Tnp_Tn3  99 ...taSsDgqkfevseqnllaevnpryfgkekGvtiythvsdqyialysqvisaterealyvldgllrnesdlepeelatDthGysdvvFallhllgf 193
                       ++Dgqkf+v++ +++a+++ +yfg++kG+++yt++ + +i+++  +i ++++e ++v+d+++rn+s ++p ++++D+h++++++Fa+lh++g+
   EHT99235.1 513 etlYGAVDGQKFGVERPTVKARYSRKYFGRGKGMVAYTLLCN-HIPINGYLIGTNDYEGHHVFDIWYRNTSAVKPVAITGDMHSINKANFAILHWFGL 609
                  7799**************************************.******************************************************* PP

  DDE_Tnp_Tn3 194 klaPRlrdlkdq..klyrpdakadykeldalltkkinldlIeehwddllrlaaSiklgkvsastilrkLssysrqnplykAlrelGriikTlfllrYl 289
                  ++ P + dl++q  +ly +++ ++yk+      ++i+ldlI+ + ++l r++a++ l+++++ t++rkL +y   np+ +A+ e++r+i+++++l+Yl
   EHT99235.1 610 RFEPHFTDLNRQlpELYCTRELSTYKKCLIQPAGQIDLDLIACEKNNLERIVATLGLKEMTQGTLIRKLCTYTTANPTRQAVFEYDRLIRSIYTLKYL 707
                  *************************8776666699*************************************************************** PP

  DDE_Tnp_Tn3 290 ddeelRreiqaqlnkgEsrhalaraiff.gkegeirerrreeqekrlsalrLvanaivlwNtlylsealeelraegeevkdellarlsplawehinll 386
                  +d++l r+i+++ n++Es+h+l+ a++  g+++e++++++ e ++++++ rL+ naiv++N+++ls++le+l+aeg++   e l+r+sp+aw+hi l+
   EHT99235.1 708 RDPQLERNIHRSQNRIESYHQLRAAVAKvGGKKELTGKNDIETDISNQCGRLICNAIVYYNSAILSRLLERLEAEGNDKGIEALTRISPVAWQHILLN 805
                  **************************8615667***************************************************************** PP

  DDE_Tnp_Tn3 387 GeY 389
                  G+Y
   EHT99235.1 806 GHY 808
                  **9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6095.81
//
Query:       EHT99236.1  [L=857]
Description: protein disaggregation chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-58  195.6   0.0    1.5e-55  187.9   0.0    2.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.3e-35  120.1   5.0    3.3e-35  120.1   5.0    2.7  2  AAA_lid_9        AAA lid domain
    1.7e-28   98.5   2.3    3.6e-28   97.4   0.2    2.8  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    4.4e-27   95.1   0.0    1.7e-13   51.1   0.0    2.8  2  AAA              ATPase family associated with various cellul
      4e-26   90.9   5.4    7.9e-13   48.3   0.1    3.1  2  Clp_N            Clp amino terminal domain, pathogenicity isl
      6e-19   68.4   0.0    2.7e-13   50.1   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
    9.7e-13   48.8   6.2      5e-05   23.8   0.0    5.1  4  AAA_16           AAA ATPase domain
    3.9e-09   36.4   0.0      4e-06   26.6   0.0    3.0  2  Sigma54_activat  Sigma-54 interaction domain
    7.6e-08   32.7   6.1     0.0058   16.9   0.1    5.0  3  AAA_22           AAA domain
    2.3e-06   27.1   0.0      0.015   14.7   0.0    3.8  2  TniB             Bacterial TniB protein
    4.2e-06   27.3   0.1       0.32   11.6   0.0    4.1  3  AAA_18           AAA domain
    6.7e-06   25.9   0.0      0.043   13.6   0.0    2.9  2  IstB_IS21        IstB-like ATP binding protein
    1.7e-05   24.6   1.0        1.6    8.5   0.0    4.6  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.3e-05   23.9   0.8        2.2    8.1   0.2    4.1  4  ATPase_2         ATPase domain predominantly from Archaea
    4.9e-05   23.4   0.0       0.27   11.3   0.0    3.3  3  AAA_14           AAA domain
    5.9e-05   22.6   0.0       0.14   11.7   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    6.5e-05   22.7   0.0      0.048   13.4   0.0    2.9  2  AAA_24           AAA domain
    0.00026   21.3   0.0       0.92    9.9   0.0    3.0  2  RNA_helicase     RNA helicase
    0.00036   20.7   0.0        1.1    9.5   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    0.00075   19.8   1.2       0.49   10.6   0.2    3.7  2  AAA_28           AAA domain
     0.0008   19.4   0.0        1.8    8.4   0.0    2.8  2  RsgA_GTPase      RsgA GTPase
    0.00083   18.8   0.1        1.4    8.2   0.0    3.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00088   19.2   0.0       0.19   11.6   0.0    2.7  2  NACHT            NACHT domain
     0.0012   18.7   0.0       0.79    9.6   0.0    3.2  2  AAA_3            ATPase family associated with various cellul
     0.0012   18.8   0.0        1.7    8.6   0.0    2.7  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0021   17.3   0.0       0.56    9.3   0.0    2.9  2  DUF815           Protein of unknown function (DUF815)
     0.0057   16.7   0.0        5.7    6.9   0.0    3.5  3  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.016   15.4   0.0        8.5    6.5   0.0    2.9  2  AAA_33           AAA domain
      0.019   14.5   0.0        1.3    8.5   0.0    3.0  2  AAA_25           AAA domain
      0.022   15.2   2.5        4.8    7.7   0.0    3.5  3  ABC_tran         ABC transporter
      0.025   14.5   0.0        8.9    6.2   0.0    2.8  2  NTPase_1         NTPase
      0.025   14.3   0.0        7.2    6.4   0.0    2.7  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.027   13.8   0.0        4.7    6.4   0.0    2.8  2  Zeta_toxin       Zeta toxin
      0.028   14.8   0.1        1.2    9.5   0.1    3.0  3  AAA_19           AAA domain
      0.035   13.9   0.0        1.2    8.8   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.046   13.5   0.0         13    5.7   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
      0.047   13.3   0.0        1.4    8.5   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
      0.062   13.4   0.0        0.2   11.8   0.0    1.8  1  Root_cap         Root cap
      0.086   12.6   0.0        1.6    8.5   0.0    2.4  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.41   10.5   3.7       0.87    9.4   0.6    2.9  3  MEDS             MEDS: MEthanogen/methylotroph, DcmR Sensory 
        7.2    7.1  25.8        8.3    6.9   0.0    4.3  2  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.056        25       6      77 ..     202     280 ..     197     292 .. 0.78
   2 !  187.9   0.0   3.4e-58   1.5e-55       1     171 []     596     760 ..     596     760 .. 0.98

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.056
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHH.HHHHHHTTT-HHHHTTSEEEEETG CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselleeeevehlv.srligappgyvgaeegGivllDEi 77 
                   l+g+ gvGkt + + la+ +         k +++  +d+ +l  + + +    +rl+g      ++e + i+++DE+
  EHT99236.1 202 PVLIGEPGVGKTAIVEGLAQRIINgevpegLKGRRVLALDMGALVAGAKYRGEFeERLKGVLSDLAKQEGNVILFIDEL 280
                 5689999******9999999885578899888899999*****999666554441567777777777777779999997 PP

  == domain 2  score: 187.9 bits;  conditional E-value: 3.4e-58
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rp++s+l+lgptgvGktel k+la++lf +++++++r+d+se++e    +h+vsrl+gappgyvg+eegG            ++llDEi+K+hp     
  EHT99236.1 596 RPVGSFLFLGPTGVGKTELCKSLANFLF-DSDDAMVRIDMSEFME----KHSVSRLVGAPPGYVGYEEGGylteavrrrpysVILLDEIEKAHP----- 684
                 689*************************.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq+l++g+ltd qgr+vd++n+++Imt+++gs+ i++  r ++ ++ ++k  v+  + ++++pE+++R++e+
  EHT99236.1 685 ------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE--RFGNLNYAEMKGVVMGVVGQHFRPEFVNRIDEV 760
                 ......*******************************************..6668**************************985 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   5.0   7.6e-38   3.3e-35       1     102 [.     342     443 ..     342     447 .. 0.97
   2 ?   -0.2   0.8       2.2   9.5e+02      73      98 ..     443     468 ..     438     503 .. 0.60

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 7.6e-38
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 s+e+ti+iLrglke+ye hH+v+i+d a++aa++lS+rYi dr+lPdkAIDl+Deaa+++r++ +skpe l++le+++ +l+ e++al+ke+++++ +r
  EHT99236.1 342 SVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEALDRLERRIIQLKLEQQALKKESDDASVKR 440
                 689******************************************************************************************999999 PP

   AAA_lid_9 100 lke 102
                 l+ 
  EHT99236.1 441 LEM 443
                 875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.2
   AAA_lid_9  73 klekelaklekekealekeeekekae 98 
                  le+el++ e+e ++le+e + eka+
  EHT99236.1 443 MLEAELNQKEREYAELEEEWKAEKAS 468
                 55555555555555555555544443 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       6.8     3e+03      20      36 ..     414     430 ..     404     437 .. 0.74
   2 !   97.4   0.2   8.3e-31   3.6e-28       1      80 [.     766     845 ..     766     846 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.8
                    HSCTTTEEEEEHHHHHH CS
  ClpB_D2-small  20 rlkergvelevtdeald 36 
                    rl++r ++l+++++al+
     EHT99236.1 414 RLERRIIQLKLEQQALK 430
                    66666677777777765 PP

  == domain 2  score: 97.4 bits;  conditional E-value: 8.3e-31
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvr 80 
                    L+++++ +I++++l++l+krl++rg++l+++d+a++ l e+gydp+yGARpL+r+iq++ie+pla++ilsg+l++g+ ++
     EHT99236.1 766 LGEKHIASIAQIQLQRLYKRLEDRGYQLHISDAAIKLLGENGYDPVYGARPLKRAIQQQIENPLAQQILSGQLVPGKVIE 845
                    899************************************************************************99886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   3.9e-16   1.7e-13       2     128 ..     203     337 ..     202     341 .. 0.82
   2 !   41.1   0.0     5e-13   2.2e-10       2     118 ..     602     728 ..     601     738 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 3.9e-16
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +          g+++l +++  l+   ky ge e++++++++++ ++++ +ilfiDE++ ++++    + + ++++ n 
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRIingevpeglkGRRVLALDMGALVagAKYRGEFEERLKGVLSDLAKQEGNVILFIDELHTMVGAG---KADGAMDAGNM 298
                 599*****************77776676666699*********98778***************6555548***************...88999999999 PP

                 HHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHS.TTSSEEE CS
         AAA  89 Llteldgvkkkeskvivigatnr...pdkldpallr.gRfdrki 128
                 L ++l + +       ++gat+     + +++   + +Rf++++
  EHT99236.1 299 LKPALARGEL-----HCVGATTLdeyRQYIEKDAALeRRFQKVF 337
                 9999998877.....57888887665444544444447887766 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 5e-13
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeer 84 
                 l+ Gp G+GKT l+k++a+ l   +  +++i++se+++k            yvg  e    ++++ea + + p s++++DEi++ +++           
  EHT99236.1 602 LFLGPTGVGKTELCKSLANFLfdsDDAMVRIDMSEFMEKhsvsrlvgappgYVGYEEG---GYLTEAVRRR-PySVILLDEIEKAHPDV---------- 686
                 899*****************8665688**********999****99999998887776...4566655555.77***********9999.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESS.GGGSTHH CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnr.pdkldpa 118
                   n Ll++ld+ +           ++++vi+++n   d +++ 
  EHT99236.1 687 -FNILLQVLDDGRLTdgqgrtvdFRNTVVIMTSNLgSDLIQER 728
                 .***********9999*******6669*******977777665 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1     3e-14   1.3e-11       1      52 [.      17      68 ..      17      69 .. 0.98
   2 !   48.3   0.1   1.8e-15   7.9e-13       1      53 []      94     145 ..      94     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3e-14
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                Aq+lA+ +++q+i++ HL+ ALl++++G  a+lL   G+d++ lr +i++++
  EHT99236.1 17 AQSLALGHDNQFIEPLHLMSALLKQEGGSVAPLLSCTGIDVASLRTQIDQAI 68
                9************************************************987 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 1.8e-15
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53 
                 +++lA+++++++is+E + lA l+ ++G +a++Lk aG++ d+l kaie+l+g
  EHT99236.1  94 CDKLAQKRNDNFISSELFVLAALD-SRGSLADILKSAGATNDKLTKAIEQLRG 145
                 689******************999.78************************97 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.3e-05     0.019       3      27 ..     203     228 ..     201     284 .. 0.74
   2 !   50.1   0.0   6.1e-16   2.7e-13       2     123 ..     601     721 ..     600     730 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-05
                 EEE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nrev 27 
                 +L+G+pG+gK+ ++e la+++ n ev
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRIiNGEV 228
                 79******************986655 PP

  == domain 2  score: 50.1 bits;  conditional E-value: 6.1e-16
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........-.-------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvds.plvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l +Gp+G+gK+el ++la +l    + ++ + +++++++  +   +   +g   ++++  l++a+r    ++++lDE+e+a+++v+n+Ll++l++ rl
  EHT99236.1 601 FLFLGPTGVGKTELCKSLANFLfdsDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGgYLTEAVRrrPYSVILLDEIEKAHPDVFNILLQVLDDGRL 699
                 789*********************999999************999999777777777651567777788889*************************** PP

                 E..-SSSEEE---......-EEEEEESS- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpl 123
                   +  g+ v+++n      + vi+t+n  
  EHT99236.1 700 T-DGQGRTVDFRN------TVVIMTSNLG 721
                 *.44444455555......8999999965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.1e-07     5e-05       2      48 ..     180     223 ..     179     231 .. 0.84
   2 ?    5.7   0.0      0.04        17     118     146 ..     254     288 ..     236     306 .. 0.71
   3 !   17.4   0.0   1.1e-05    0.0046       2      51 ..     570     625 ..     569     654 .. 0.87
   4 ?   -0.5   0.0       3.2   1.4e+03     134     159 ..     668     694 ..     659     706 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.1e-07
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellral 48 
                 ++GR+ee+++  ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++
  EHT99236.1 180 VIGRDEEIRRTIQVLQRRTKNNP---VLIGEPGVGKTAIVEGLAQRI 223
                 78******888888887766655...899***********9999876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.04
      AAA_16 118 rllellkrll.allsrderplvlvlDdlq......w 146
                  + e lk  l +l+++ e  ++l++D+l+      +
  EHT99236.1 254 EFEERLKGVLsDLAKQ-EGNVILFIDELHtmvgagK 288
                 4667777778556676.666********95555442 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.1e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekd 51 
                 ++G +e +e++ +a++r r+g        ++ l+ G+ GvGK+ l ++l++ l ++
  EHT99236.1 570 VIGQDEAVEAVSNAIRRSRAGLAdpnrpvGSFLFLGPTGVGKTELCKSLANFLFDS 625
                 7899************999997788999********************99876655 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 3.2
      AAA_16 134 erp.lvlvlDdlqwadeaslqllaaLl 159
                 +rp  v++lD++++a ++  ++l + l
  EHT99236.1 668 RRPySVILLDEIEKAHPDVFNILLQVL 694
                 445589*********999988854444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.015       6.5       2      44 ..     181     221 ..     180     290 .. 0.81
   2 !   26.6   0.0   9.2e-09     4e-06      23     154 ..     599     729 ..     557     740 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraihe 44 
                      ig++e+++++++ +++ +k+  +vl  Ge G+GK+ + + + +
       EHT99236.1 181 IGRDEEIRRTIQVLQRRTKN-NPVL-IGEPGVGKTAIVEGLAQ 221
                      78888888888888876543.4555.5********99877655 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 9.2e-09
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLl 114
                       s l +G +G+GK+ l +++ +    ++  +v+++++++ e+   s+L G   G + G e+      ++++   ++++LDei++  +++ + Ll
       EHT99236.1 599 GSFLFLGPTGVGKTELCKSLANFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPG-YVGYEEGGYltEAVRRRPYSVILLDEIEKAHPDVFNILL 691
                      56899*********************************************9998.88877654333445555679******************* PP

                      HHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS CS
  Sigma54_activat 115 rvlqegevervGsskeikvdvriiaatnedleeaveegkf 154
                      +vl++g+++  G+ +++++   ++  t+ +l + + +++f
       EHT99236.1 692 QVLDDGRLTD-GQGRTVDFRNTVVIMTS-NLGSDLIQERF 729
                      ******9886.77777777666776665.55555555565 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00027      0.12       4      46 ..     198     241 ..     195     300 .. 0.65
   2 ?    0.2   0.5       1.9   8.4e+02      37     114 ..     327     418 ..     313     440 .. 0.64
   3 !   16.9   0.1   1.3e-05    0.0058       7     118 ..     600     696 ..     596     720 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00027
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvt 46 
                 t++  v++Ge+G+GKT  ++ l+++  + + +e  ++++v+  +
  EHT99236.1 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGlKGRRVLALD 241
                 788889*************9999986444333334444444433 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.9
      AAA_22  37 e...erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav......ielliiDEaqh.lr....s.eealeeL.rs 114
                     +r + vfv  ps ++   +lr l + ++l ++   + ++  + a +  ++++ +      +++ +iDEa   +r    s +eal  L r+
  EHT99236.1 327 AaleRRFQKVFVAEPSVEDTIAILRGLKERYELHHHV--QITDPAIVAAATLSHRYIAdrqlpdKAIDLIDEAASsIRmqidSkPEALDRLeRR 418
                 1445677778888888888888888888888877777..3333333444444444444455687888899999997767655258888888543 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.3e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 + +  G++G+GKT l++ l++ l         ++  v++++++ ++  ++     r +g +  +      e   +l++a+r+r   +++++DE+++  +
  EHT99236.1 600 SFLFLGPTGVGKTELCKSLANFLFD------SDDAMVRIDMSEFMEKHSV----SRLVGAPPGY---VGYEEGGYLTEAVRRRPY-SVILLDEIEKA-H 683
                 56778*****************953......488888*******966555....6666666666...556667889999999999.9*********9.9 PP

      AAA_22 106 eealeeLrsllnl 118
                 +++++ L + l++
  EHT99236.1 684 PDVFNILLQVLDD 696
                 ***9999888886 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.4e-05     0.015      30     183 ..     194     337 ..     184     341 .. 0.72
   2 ?    3.2   0.0      0.11        50      36      56 ..     599     619 ..     561     629 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-05
        TniB  30 pkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrll.relkvrvLiiDE 127
                  +r   +n +l+G++ +GKt+ive  a++             ++  ++p+  + +r  a  + al a +k r + ++  + vl+ l ++ +  +L iDE
  EHT99236.1 194 LQRRTKNNPVLIGEPGVGKTAIVEGLAQR-------------IINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLSDLaKQEGNVILFIDE 279
                 55555567777788888888888776654.............444455555555555555566777777777777766666666551455566789*** PP

        TniB 128 ihnll.agsarkqreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepia 183
                 +h ++ ag+a+    + n+lk    + ++  v++ t +e  + +++D+ l++RF+++ 
  EHT99236.1 280 LHTMVgAGKADGAMDAGNMLKPALARGELHCVGATTlDEYRQYIEKDAALERRFQKVF 337
                 **997589999999*******9999999999999983456679***********9876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
        TniB  36 pnlllvGdsnnGKtmivekFa 56 
                  + l++G++ +GKt ++++ a
  EHT99236.1 599 GSFLFLGPTGVGKTELCKSLA 619
                 68999***********99765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0058       2.5       3      31 ..     204     237 ..     203     298 .. 0.70
   2 !   11.6   0.0   0.00073      0.32       3      22 ..     603     622 ..     602     655 .. 0.76
   3 ?    1.8   0.0      0.76   3.3e+02     104     118 ..     780     794 ..     705     804 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0058
      AAA_18   3 ltGtpGvGKttlakeLskrlgf......gvnlrdv 31 
                 l G pGvGKt + + L++r  +      g + r v
  EHT99236.1 204 LIGEPGVGKTAIVEGLAQRI-IngevpeGLKGRRV 237
                 8899************9996.22466664444444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00073
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                   G+ GvGKt+l+k L++ l
  EHT99236.1 603 FLGPTGVGKTELCKSLANFL 622
                 57**************8754 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.76
      AAA_18 104 eelleRlekRgyeea 118
                 + l++Rle+Rgy+ +
  EHT99236.1 780 QRLYKRLEDRGYQLH 794
                 679********9865 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.8e-05     0.043      45     105 ..     197     261 ..     173     282 .. 0.82
   2 !    8.9   0.0    0.0027       1.2      50      78 ..     601     629 ..     596     649 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-05
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkr 105
                 ++k+n vl+G +GvGK+ +   l+++ ++    +gl+ + v + d+ + ++ a+  g+++++lk 
  EHT99236.1 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINgevpEGLKGRRVLALDMGALVAGAKYRGEFEERLKG 261
                 57899********************9887545578888888888888888888888888887764 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0027
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsv 78 
                 +++lGp+GvGK+ l  +l+     ++ ++
  EHT99236.1 601 FLFLGPTGVGKTELCKSLANFLFDSDDAM 629
                 789**************998776655555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3     0.012         5      36      96 ..     202     283 ..     177     289 .. 0.50
   2 ?   -2.6   0.0       9.1     4e+03       9      51 ..     337     378 ..     332     384 .. 0.76
   3 !    8.5   0.0    0.0036       1.6       8      55 ..     569     620 ..     562     640 .. 0.80
   4 ?    0.7   0.0      0.92     4e+02      84     113 ..     670     699 ..     661     714 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
      RuvB_N  36 vllyGpPGlGkttlak.....iiakelgvklk......itsgPvl.......ekagdlaalltnleekd...vlfideihrl 96 
                  +l+G PG+Gkt++ +     ii  e+   lk         g  +       e +  l ++l++l +++   +lfide+h +
  EHT99236.1 202 PVLIGEPGVGKTAIVEglaqrIINGEVPEGLKgrrvlaLDMGALVagakyrgEFEERLKGVLSDLAKQEgnvILFIDELHTM 283
                 4567888888888765111124444443333311111111222221111111123346666666665444446777777765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.1
      RuvB_N   9 yigqekvkeklkifieaakkreealdhvllyGpPGlGkttlak 51 
                 +++  +v+++++i ++  k+r e   hv ++ p  +  +tl++
  EHT99236.1 337 FVAEPSVEDTIAI-LRGLKERYELHHHVQITDPAIVAAATLSH 378
                 6666777777765.57889999999999999988888888775 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0036
      RuvB_N   8 eyigqekvkeklkifieaakk....reealdhvllyGpPGlGkttlakiiak 55 
                   igq++  e ++ +i+ +++     ++++   l+ Gp G+Gkt l+k +a+
  EHT99236.1 569 RVIGQDEAVEAVSNAIRRSRAgladPNRPVGSFLFLGPTGVGKTELCKSLAN 620
                 568899988888888887765222246788899*************999987 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.92
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrl 113
                 +  v+++dei + ++ v ++l + ++d rl
  EHT99236.1 670 PYSVILLDEIEKAHPDVFNILLQVLDDGRL 699
                 56799********************99876 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.2    0.0051       2.2       4      42 ..     183     221 ..     180     227 .. 0.89
   2 ?    4.7   0.0     0.055        24     102     135 ..     255     286 ..     241     358 .. 0.80
   3 ?   -1.5   0.1       4.4   1.9e+03     120     149 ..     390     419 ..     313     456 .. 0.65
   4 ?    6.2   0.0      0.02       8.6      26      55 ..     604     633 ..     594     694 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0051
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 R++e+++  ++l+r +++  ++ G  g+GKta++  +++
  EHT99236.1 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221
                 99************999999999*********9987665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.055
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidlgl 135
                  ++ ++ +l ++ k+   +i++iDel  ++  g 
  EHT99236.1 255 FEERLKGVLSDLAKQEGNVILFIDELHTMV--GA 286
                 5678899999*****9**********9998..43 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.4
    ATPase_2 120 iiiiiDelqklidlglngaellvkeLlnli 149
                  i +iDe++  i ++++++ + ++ L + i
  EHT99236.1 390 AIDLIDEAASSIRMQIDSKPEALDRLERRI 419
                 455667776666666666666666555544 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.02
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviyyi 55 
                  Gp g+GKt L k +++ l d+d+  + ++
  EHT99236.1 604 LGPTGVGKTELCKSLANFLFDSDDAMVRID 633
                 4***************99988877666554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0073       3.2       6      79 ..     203     286 ..     199     327 .. 0.75
   2 ?   -1.5   0.2       5.6   2.4e+03      30      67 ..     416     455 ..     410     470 .. 0.66
   3 !   11.3   0.0   0.00061      0.27       8      90 ..     604     697 ..     600     710 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0073
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelilek.lkeekktylflDEiqevpew 79 
                 v+ G   vGKT +++ l+++ +        k +++l +++      +k++ ++e+ l+ +l+  +k+e++ +lf+DE + + ++
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRIIngevpegLKGRRVLALDMGALVAgAKYRgEFEERLKGVLSDlAKQEGNVILFIDELHTMVGA 286
                 56677789******9999988899988777777888877766544433333555555566655366689999******998554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.6
      AAA_14  30 kesilyinldderdkkladpe..kllelileklkeekkty 67 
                 +++i+ ++l+++ +kk++d +  k le++ ++l++++++y
  EHT99236.1 416 ERRIIQLKLEQQALKKESDDAsvKRLEMLEAELNQKEREY 455
                 5789999999999988886653333344444444445554 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00061
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...........kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  vGKT l+k l++ l+ +++ ++ i++ +  +k +  ++           +   ++ e ++++  ++++lDEi ++ p+++++l +++d+g
  EHT99236.1 604 LGPTGVGKTELCKSLANFLFDSDDAMVRIDMSEFMEKHSV-SRlvgappgyvgyEEGGYLTEAVRRRPYSVILLDEIEKAhPDVFNILLQVLDDG 697
                 6999************888877788888888886664322.212344444444322233344343345567******987689999999999987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0047       2.1      32      56 ..     198     222 ..     184     229 .. 0.78
   2 !   11.7   0.0   0.00032      0.14      36      81 ..     601     646 ..     595     650 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
       AAA_7  32 nkkpvllvGptGtGKtviikdllkk 56 
                  k++ +l+G+ G+GKt+i++ l ++
  EHT99236.1 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222
                 45566789***********987765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00032
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdi 81 
                 +l+ GptG+GKt ++k+l + l +++  ++ i +s  ++ +++ ++
  EHT99236.1 601 FLFLGPTGVGKTELCKSLANFLFDSDDAMVRIDMSEFMEKHSVSRL 646
                 79****************9999999999999999998888777665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.018       7.8       3      24 ..     200     221 ..     198     283 .. 0.81
   2 !   13.4   0.0   0.00011     0.048       6      85 ..     602     690 ..     600     706 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.018
      AAA_24   3 lkiliyGpsgiGKTtlakelgp 24 
                 ++ +++G++g+GKT ++  l +
  EHT99236.1 200 NNPVLIGEPGVGKTAIVEGLAQ 221
                 56699*********99987744 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00011
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelclaev 85 
                 l  Gp g+GKT l+k+l  ++l +d ++ + ++d  +f + +s+  ++ +               a   ++y+++ +D i+++   +++ +
  EHT99236.1 602 LFLGPTGVGKTELCKSL-ANFL-FDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYvgyeeggylteAVRRRPYSVILLDEIEKAHPDVFNIL 690
                 678**************.7776.59999899999999987766666655544448889999999989999999999999999987776655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0098       4.3       3      23 ..     204     224 ..     203     236 .. 0.88
   2 !    9.9   0.0    0.0021      0.92       2      23 ..     602     623 ..     601     643 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0098
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l G++g+GK+ +++ La+++ 
    EHT99236.1 204 LIGEPGVGKTAIVEGLAQRII 224
                   78***************9987 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0021
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gp+g+GK+ l+k+La+ l 
    EHT99236.1 602 LFLGPTGVGKTELCKSLANFLF 623
                   589*************998765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0049       2.1       3      22 ..     203     222 ..     202     231 .. 0.85
   2 !    9.5   0.0    0.0025       1.1       3      36 ..     602     634 ..     600     645 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0049
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                 vl+G+ gvGKt +++ + ++
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQR 222
                 79***********9988765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0025
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdf 36 
                 +++G +gvGKt l+k++ +  f+++ ++++ +d+
  EHT99236.1 602 LFLGPTGVGKTELCKSLANFLFDSD-DAMVRIDM 634
                 789***************9988765.45666665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2    0.0011      0.49       3     118 ..     203     342 ..     201     384 .. 0.71
   2 ?    5.5   0.0     0.043        19       3      21 ..     602     620 ..     600     636 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
      AAA_28   3 vitGgestGKTtlleaLaar..gypvvpE..aareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDrglldtlaYaraygg... 94 
                 v++G ++ GKT ++e La+r  +   vpE   +r++l   +      +++   + +f+er l+  l+++a++++n +lf+D +l + +   +a+g    
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRiiNG-EVPEglKGRRVLALDMGALVAGAKY---RGEFEER-LKGVLSDLAKQEGNVILFID-ELHTMVGAGKADGAmda 295
                 89******************6533.3444225788887777665543433...4677775.78888888888888888888.46666667777766777 PP

      AAA_28  95 ......................eaeaelea.aarekrydlvfllppa 118
                                       e+ +++e+ aa e+r ++vf+ +p+
  EHT99236.1 296 gnmlkpalargelhcvgattldEYRQYIEKdAALERRFQKVFVAEPS 342
                 77777777777777777777654666666545566677777777775 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.043
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  ++G+ + GKT l++ La+
  EHT99236.1 602 LFLGPTGVGKTELCKSLAN 620
                 689**************96 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0041       1.8      88     122 ..     189     222 ..     156     235 .. 0.73
   2 !    7.6   0.0    0.0073       3.2     100     121 ..     599     620 ..     555     639 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0041
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpe 122
                  ++++ l+++ +++  vl+G+ GvGK+++++ l+++
   EHT99236.1 189 RTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQR 222
                  334444444.445679*************999875 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0073
                  SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallp 121
                     +++G++GvGK+ L ++l++
   EHT99236.1 599 GSFLFLGPTGVGKTELCKSLAN 620
                  56789*********99988865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.029        13      21      44 ..     198     221 ..     177     247 .. 0.72
   2 !    8.2   0.0    0.0033       1.4      24      63 ..     600     643 ..     569     722 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.029
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlps 44 
                    + n +l+G pG GKt + + l++
    EHT99236.1 198 TKNNPVLIGEPGVGKTAIVEGLAQ 221
                   456789***********9988765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0033
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplsee....ealevakiasv 63 
                   ++l++Gp G GKt l k l++ l + +++    ++ e  + +sv
    EHT99236.1 600 SFLFLGPTGVGKTELCKSLANFLFDSDDAmvriDMSEFMEKHSV 643
                   5799****************999876543111144455555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00044      0.19       4      33 ..     203     232 ..     202     290 .. 0.83
   2 ?    4.6   0.0     0.063        27       5      28 ..     603     626 ..     600     648 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00044
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqga 33 
                 +l Ge+G+GKT+ +++la+ +  g+ p+g 
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRIINGEVPEGL 232
                 689*****************9999988765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.063
                 EEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegk 28 
                   G+ G+GKT L ++la  + +++
  EHT99236.1 603 FLGPTGVGKTELCKSLANFLFDSD 626
                 68**************98776665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.065        29       4      23 ..     204     223 ..     202     228 .. 0.87
   2 !    9.6   0.0    0.0018      0.79      63     110 ..     671     718 ..     601     723 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.065
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt +v+ la+ +
  EHT99236.1 204 LIGEPGVGKTAIVEGLAQRI 223
                 6789*************976 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0018
       AAA_3  63 anllladeinrappktqsalleameerqvtve.gethklpepflvlatq 110
                  +++l dei++a p +   ll+++++ ++t + g+t ++ ++ +v+ t 
  EHT99236.1 671 YSVILLDEIEKAHPDVFNILLQVLDDGRLTDGqGRTVDFRNT-VVIMTS 718
                 4699************************99751455555555.444555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0039       1.7       6      43 ..     186     223 ..     182     229 .. 0.79
   2 ?    7.0   0.0     0.012       5.4      21      43 ..     598     622 ..     571     630 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   6 etealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 e+++  + l++ +++  +L G+ G+GKT++v gla+ +
  EHT99236.1 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223
                 556666667666677899*****************986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
                 E..EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  21 v..ilLeGdLGaGKTtlvrglakal 43 
                 v  +l+ G+ G+GKT l+++la+ l
  EHT99236.1 598 VgsFLFLGPTGVGKTELCKSLANFL 622
                 1558899*************99865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0013      0.56      41      80 ..     187     226 ..     155     283 .. 0.74
   2 ?    4.5   0.0     0.038        17      32      96 ..     572     641 ..     551     651 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
      DUF815  41 venteqfleglpannvLLwGarGtGKSslvkallneyaee 80 
                 ++ t q l+ ++ nn +L+G+ G+GK ++v  l +++ + 
  EHT99236.1 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING 226
                 56788999999*********************99987654 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.038
      DUF815  32 gidkqkealventeqflegl.....pannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelp 96 
                 g d+  ea+ + +++  +gl     p    L+ G  G+GK  l+k+l n + ++  +++ ++ ++  e  
  EHT99236.1 572 GQDEAVEAVSNAIRRSRAGLadpnrPVGSFLFLGPTGVGKTELCKSLANFLFDSDDAMVRIDMSEFMEKH 641
                 55555555555555555554111114556899*****************999999999999888776655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.072        31      10      50 ..     185     225 ..     154     240 .. 0.83
   2 ?   -0.3   0.0       2.1   9.1e+02     127     146 ..     266     285 ..     253     303 .. 0.77
   3 ?    6.9   0.0     0.013       5.7       8      50 ..     573     624 ..     569     631 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.072
                 HHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  10 eaienlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 
                 e i+++++ l+ + +++ ++  + G+GKT +   l++r+ +
  EHT99236.1 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225
                 557788888886777788999**********9888888765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.1
                 HHHTTT-SEEEEETGGGTTS CS
      ResIII 127 ellrdrfdviiiDEaHrlga 146
                  ++++ + +++iDE H + +
  EHT99236.1 266 LAKQEGNVILFIDELHTMVG 285
                 5566677799******8876 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.013
                 HHHHHHHHT..............TTS...EEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII   8 Qeeaienlleklks........krdk...rglikmaTGtGKTlvaaklierllk 50 
                 Q ea+e++ +++          +  +    +l+  +TG+GKT ++ +l+  l+ 
  EHT99236.1 573 QDEAVEAVSNAIRRsragladpN--RpvgSFLFLGPTGVGKTELCKSLANFLFD 624
                 88899999988887777776543..1456899**********998888776665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.042        18       4      22 ..     204     222 ..     203     228 .. 0.91
   2 ?    6.5   0.0     0.019       8.5       3      32 ..     602     636 ..     601     669 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.042
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+  +e+l+++
  EHT99236.1 204 LIGEPGVGKTAIVEGLAQR 222
                 89*************9975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.019
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdt 32 
                 l+ G+ G+GK+ l ++l++ l      +v+++  +
  EHT99236.1 602 LFLGPTGVGKTELCKSLANFLFdsddaMVRIDMSE 636
                 799*************9865555555666665555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.003       1.3      37     108 ..     203     277 ..     178     307 .. 0.74
   2 ?    2.2   0.0      0.26   1.1e+02      36      54 ..     601     619 ..     574     627 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.003
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg....pvap..eqgkVlyvsaEdsedelrrRlravgealrddarllvldl 108
                 +l+G pg+GKt+++  la  +  G+ +++    + ++    +  l+  a   + e+++Rl+ v+ +l+ +++  +l +
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRIINGE-VPEglkgR-RVlaLDMGALVAGAK-YRGEFEERLKGVLSDLAKQEGNVILFI 277
                 699*******************998.44446642.232244444444444.455999999999988877777666665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.26
      AAA_25  36 allaGapgtGKttlaldla 54 
                  l+ G++g+GKt l+ +la
  EHT99236.1 601 FLFLGPTGVGKTELCKSLA 619
                 4678**********99887 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.088        39      15      36 ..     203     224 ..     194     259 .. 0.86
   2 ?   -1.4   1.2       6.9     3e+03      44      96 ..     424     490 ..     414     544 .. 0.54
   3 ?    7.7   0.0     0.011       4.8      16      37 ..     603     624 ..     599     648 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.088
                 EEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllk 36 
                 +++Ge G GK+ +++ la+   
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRII 224
                 79************99988764 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 6.9
                 ETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxx RF
    ABC_tran  44 ldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdeeiekalsklglke 96 
                 l+++ lk+++   + k++++l+ e + +++   +e                + ++e+e+a+ +l++  
  EHT99236.1 424 LEQQALKKESDDASVKRLEMLEAELNQKERE-YAELeeewkaekasltgtqNIKAELEQARLQLEQAR 490
                 5556666666666666666666663333333.122222344444444333333333333333333333 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.011
                 EEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp 37 
                 ++G++G GK+ L+k la+ l +
  EHT99236.1 603 FLGPTGVGKTELCKSLANFLFD 624
                 79**************987644 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.02       8.9       4      24 ..     204     224 ..     201     237 .. 0.83
   2 ?    5.2   0.0     0.042        18       6      24 ..     605     623 ..     600     632 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.02
                 EE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellk 24 
                 + G+pGvGKt +v+ +++ + 
  EHT99236.1 204 LIGEPGVGKTAIVEGLAQRII 224
                 67************9998875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.042
                 --TTSSHHHHHHHHHHHH. CS
    NTPase_1   6 GppGvGKtTlvkkvlellk 24 
                 Gp GvGKt l+k +++ l 
  EHT99236.1 605 GPTGVGKTELCKSLANFLF 623
                 9************999875 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.016       7.2      16      48 ..     595     627 ..     574     639 .. 0.88
   2 ?    4.8   0.0      0.05        22     102     128 ..     669     695 ..     660     698 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
  DNA_pol3_delta2  16 grlahayLfeGdegigkkelalnlakallceek 48 
                      +r   ++Lf G++g+gk el + la+ l+ +++
       EHT99236.1 595 NRPVGSFLFLGPTGVGKTELCKSLANFLFDSDD 627
                      5666789********************998775 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.05
  DNA_pol3_delta2 102 skkkiiiiedaekmtksAaNalLktlE 128
                        + +i+++++ek ++   N+lL++l 
       EHT99236.1 669 RPYSVILLDEIEKAHPDVFNILLQVLD 695
                      5689********************996 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.055        24      10      40 ..     193     223 ..     184     229 .. 0.74
   2 ?    6.4   0.0     0.011       4.7      14      58 ..     595     641 ..     582     651 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.055
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdel 40 
                 + +++++   +l G pG GK+++ e l++++
  EHT99236.1 193 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223
                 4555666666788************999887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.011
  Zeta_toxin  14 erPklill.gGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 +rP+  +l  G +G GK+el + l++ l  +++ +vr+d  ++ e h
  EHT99236.1 595 NRPVGSFLfLGPTGVGKTELCKSLANFLFdSDDAMVRIDMSEFMEKH 641
                 5666443315999*************999899*******99998877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0027       1.2       9      38 ..     198     227 ..     190     342 .. 0.76
   2 ?    1.1   0.0       1.1   4.6e+02      13      36 ..     601     624 ..     592     640 .. 0.81
   3 ?   -2.0   0.0       9.4   4.1e+03     102     126 ..     669     694 ..     657     700 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0027
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++ ++++ pG GKT ++++  + +++ +
  EHT99236.1 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227
                 56677899***********99988877655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.1
      AAA_19  13 llvtaGpGtGKTrvlkhivallve 36 
                 +l +++ G GKT++ k   + l +
  EHT99236.1 601 FLFLGPTGVGKTELCKSLANFLFD 624
                 678999*******99988777665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 9.4
      AAA_19 102 eee.llivDEfqdvdelqyrLlkall 126
                 + + +++ DE+    +  +++l ++l
  EHT99236.1 669 RPYsVILLDEIEKAHPDVFNILLQVL 694
                 4455999*******966666665555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.36   1.6e+02       2      18 ..     205     221 ..     204     227 .. 0.88
   2 ?    8.8   0.0    0.0028       1.2       2      25 ..     604     627 ..     603     643 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.36
  ATP_bind_1   2 vGpaGsGKttfvgalse 18 
                 +G +G+GKt +v+ l++
  EHT99236.1 205 IGEPGVGKTAIVEGLAQ 221
                 8***********99987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0028
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgr 25 
                 +Gp G+GKt ++++l+++l ++  
  EHT99236.1 604 LGPTGVGKTELCKSLANFLFDSDD 627
                 7****************9988744 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.029        13      19      41 ..     196     218 ..     188     225 .. 0.79
   2 ?    5.0   0.0     0.047        20      22      39 ..     598     615 ..     592     626 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.029
      AAA_29  19 idlkgatlltGpsGsGKSTllDA 41 
                  ++k++ +l+G+ G+GK++++  
  EHT99236.1 196 RRTKNNPVLIGEPGVGKTAIVEG 218
                 45556889***********9976 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.047
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                  g++l+ Gp+G+GK+ l 
  EHT99236.1 598 VGSFLFLGPTGVGKTELC 615
                 4689**********9775 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.35   1.5e+02       5      25 ..     203     223 ..     199     231 .. 0.87
   2 ?    8.5   0.0    0.0032       1.4       4      28 ..     601     625 ..     599     634 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.35
                 EEEESTTSSHHHHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaall 25 
                 +l+G  G+GKT  +  La+++
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQRI 223
                 799************999876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0032
                 EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkke 28 
                 +l++G++G+GKT  +  La+ l ++
  EHT99236.1 601 FLFLGPTGVGKTELCKSLANFLFDS 625
                 699****************988655 PP

>> Root_cap  Root cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00046       0.2       8      29 ..     738     759 ..     732     768 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00046
    Root_cap   8 sddVeGVLGqTYrpdYvskvkv 29 
                    V GV+Gq +rp++v++++ 
  EHT99236.1 738 KGVVMGVVGQHFRPEFVNRIDE 759
                 56799**************985 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.72   3.2e+02       5      24 ..     203     222 ..     200     227 .. 0.84
   2 ?    8.5   0.0    0.0037       1.6       4      23 ..     601     620 ..     598     630 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.72
   PduV-EutP   5 lliGkvgsGKttLtqalkge 24 
                 +liG+ g+GKt++ + l ++
  EHT99236.1 203 VLIGEPGVGKTAIVEGLAQR 222
                 69**********99888765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0037
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                  l++G++g+GKt L+++l +
  EHT99236.1 601 FLFLGPTGVGKTELCKSLAN 620
                 589**************986 PP

>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.4   1.5e+03      27      63 ..     132     177 ..     120     200 .. 0.71
   2 ?   -1.2   0.0       3.7   1.6e+03      20      51 ..     298     327 ..     257     342 .. 0.80
   3 ?    9.4   0.6     0.002      0.87      40     133 ..     472     572 ..     463     578 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.4
        MEDS  27 rgekvlyvas.........astldelrealrkagldvdaalesgql 63 
                  ++k+  +++         ++  ++ r+al+k+ +d+++  e+g+l
  EHT99236.1 132 TNDKLTKAIEqlrggdnvnDQGAEDQRQALKKYTIDLTERAEKGKL 177
                 5555555555555555555788889999999999999998888877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.7
        MEDS  20 fikaglargekvlyvasastldelrealrkag 51 
                  +k +large  ++  +a+tlde r++++k++
  EHT99236.1 298 MLKPALARGELHCV--GATTLDEYRQYIEKDA 327
                 67888999996666..3447888888887754 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.002
        MEDS  40 ldelrealrkagldvdaalesgqleildaeety........lrgggfdpermlealrralakal.adgyaglrvigemtwalrspaereelleyEalln 129
                 ++ ++++l++a l++++a++sg+l  +++ ++         l++++ + +++++ lr+++ +   ad     r++g ++  + ++ er++ll++E++l+
  EHT99236.1 472 TQNIKAELEQARLQLEQARRSGDLAQMSELQYGkipalekqLASATQSEGKTMKLLRNRVTDVEiAD--VLARWTGIPVARMMEG-ERDKLLRMEQELH 567
                 68899*****************996666555447889999999999999*************88777..89********999999.***********98 PP

        MEDS 130 e.lia 133
                   +i+
  EHT99236.1 568 SrVIG 572
                 75655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.8       2.6   1.1e+03     112     175 ..      88     164 ..      52     199 .. 0.42
   2 ?    6.9   0.0     0.019       8.3      20      53 ..     599     632 ..     593     718 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.6
      AAA_23 112 leideleqfisellgskkiilnlilflgqer.......feefel..kdkkerleelekel........eeledekkllekl 175
                 +++ +l++++ ++ + ++i+++l+++ + ++            +   +++++l +++++l        + +ed+++ l+k 
  EHT99236.1  88 IRVLNLCDKLAQKRNDNFISSELFVLAALDSrgsladiL----KsaGATNDKLTKAIEQLrggdnvndQGAEDQRQALKKY 164
                 333344444444444444444444444444333322110....02222333444444444222222222222233333333 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.019
      AAA_23  20 gltlItGpNGaGKTTildAiklaLygetprlsrk 53 
                 g +l+ Gp+G GKT +   +   L+     + r 
  EHT99236.1 599 GSFLFLGPTGVGKTELCKSLANFLFDSDDAMVRI 632
                 789***********99888888888766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1439  (0.080261); expected 358.6 (0.02)
Passed bias filter:                      755  (0.0421105); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.42
# Mc/sec: 6182.27
//
Query:       EHT99237.1  [L=243]
Description: multi-copper oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-80  269.7   0.1    2.3e-80  269.5   0.1    1.0  1  Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase


Domain annotation for each model (and alignments):
>> Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.5   0.1   1.3e-84   2.3e-80       1     231 []      19     241 ..      19     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 269.5 bits;  conditional E-value: 1.3e-84
                   E-S-SS-B-GGG-B----SSSSS-HHHHHHHHHHHHHHTTS..GEEE-B--SS--EEE-EE--GGCSSSS..B..-SEEEESSTTSEEEEEESSSEE CS
  Cu-oxidase_4   1 ttregGvsegpyaslNlglhvgDdpeaVaenrrrlaaalgv..rlvlleqvHgtevvvvaeeaaakgsaeeeeleaDalvtdepgvalavltADCvP 95 
                   t r+gGvseg++ slNlg hvgD++e+V++nr+rl + + +     +l+qvH+t+v ++ ++++      ++  +aDa++t+epgv++av+tADC+P
    EHT99237.1  19 TLRHGGVSEGNWCSLNLGGHVGDKAEHVRANRERLVSLAALpaMPQWLNQVHSTDVEHLSARMD------PQPRQADACITREPGVVCAVMTADCLP 109
                   67**********************************9877765577**********66554222......233459********************* PP

                   EEEEETTSSEEEEEEE-HHHHHHTHHHHHHHHHCSTT--GGGEEEEE-SB--TTT-EEEHHHHHHHHHHSGGGG.EEEEETTEEEE-HHHHHHHHHH CS
  Cu-oxidase_4  96 vlladpkgkvvaaaHaGwrGlvagvlektveamkelgakpedilaaiGPsIgpecyeVgeevaeafeaadpeaa.aaaeeegkaylDLaalarlqLe 191
                   vl+++++g+ vaaaHaGwrGl++gvle+t++++++    p++i+a++GP+Igp+++eVg+ev++af++ dp+aa a +   +k ++D+++lar++L+
    EHT99237.1 110 VLFCSDDGREVAAAHAGWRGLCGGVLENTLAQFQA---PPDRIHAWLGPAIGPDAFEVGAEVRRAFMDIDPRAAdAFRPVGDKFFADIWHLARQRLQ 203
                   *********************************88...*********************************99966666666778************ PP

                   HTT-..SEEEE---BTTT-TTT---HHHHSH---EEEEEE CS
  Cu-oxidase_4 192 eaGvkeenieasglCTvceedrfFSyRrdggtGrmaaliw 231
                   +aGv  ++++a + CTv+e+d+fFSyRrdg tGrma+liw
    EHT99237.1 204 AAGV--QSVSADSRCTVSEPDNFFSYRRDGITGRMATLIW 241
                   ****..***********************55********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1925.12
//
Query:       EHT99238.1  [L=326]
Description: 23S rRNA pseudouridine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-32  111.4   0.2    6.1e-32  110.9   0.2    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase
      1e-11   44.4   0.1    1.7e-11   43.7   0.1    1.4  1  S4               S4 domain
  ------ inclusion threshold ------
      0.012   15.4   0.4      0.046   13.5   0.2    1.9  2  S4_2             S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.2     1e-35   6.1e-32       1     160 []      92     242 ..      92     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 1e-35
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      d++v+nKP +++v+p+a +   ++        +a  ++ + ++vhRLDk+t+Gl+++Ak+  a  +l +a+++r+++++Y a+  ++ + + g+
       EHT99238.1  92 DIIVINKPRDLVVHPGAGNPDGTVLNALLHHYPAIVDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVDALQRREITREYEAVA-IGTMTAGGT 184
                      589**************888888888888889999************************************************9.6******** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                      ++++is+   ++ ++++ + +  gk avt++++++++      +++ ++l+letGr+hQiRvh+++
       EHT99238.1 185 VDEPISR---HSTKRTHMSVHPMGKPAVTHYRIMEHF-----RAHTRLRLRLETGRTHQIRVHMSH 242
                      *******...9**************************.....**********************86 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   2.8e-15   1.7e-11       1      48 []      18      65 ..      18      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.8e-15
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +RLd+ la+l +  sr+ ++++I  +rV VNG v+++p+ +V +g+++
  EHT99238.1 18 QRLDQTLAELFPDYSRSRIKEWILNQRVSVNGTVIDKPKEKVLGGERV 65
                6*******************************************9986 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   7.6e-06     0.046      26      60 ..      36      70 ..      34      73 .. 0.92
   2 ?   -1.9   0.0       0.5     3e+03       3      16 ..     301     314 ..     300     316 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.6e-06
        S4_2 26 aKafiaegeVkvNGevetrRgkKlraGdvVeidge 60
                 K+ i ++ V+vNG v ++ + K+  G+ V+id e
  EHT99238.1 36 IKEWILNQRVSVNGTVIDKPKEKVLGGERVTIDAE 70
                6999****************************865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.5
        S4_2   3 irdeyItLgqlLKl 16 
                 i +++I L + LK+
  EHT99238.1 301 IPQDMIDLIDALKA 314
                 56799*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2566.95
//
Query:       EHT99239.1  [L=243]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-81  273.1   7.8    1.6e-81  272.9   7.8    1.0  1  YfiO             Outer membrane lipoprotein
    9.5e-67  223.6  11.0    1.9e-66  222.6   6.0    2.0  2  TPR_18           Tetratricopeptide repeat
     0.0013   19.2   3.8        3.2    8.6   0.0    4.0  3  TPR_6            Tetratricopeptide repeat
     0.0016   18.6   2.9        1.9    8.8   0.0    3.3  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
  ------ inclusion threshold ------
      0.019   14.7   0.3      0.019   14.7   0.3    2.1  3  TPR_21           Tetratricopeptide repeat-like domain
      0.056   13.0   0.0      0.077   12.6   0.0    1.3  1  Beta-lactamase2  Beta-lactamase enzyme family
      0.077   13.2   1.3        1.2    9.3   0.0    2.9  3  TPR_9            Tetratricopeptide repeat
       0.12   12.9   0.4       0.12   12.9   0.4    3.8  3  TPR_19           Tetratricopeptide repeat
        0.3   12.0   5.2        2.4    9.2   0.1    3.9  4  TPR_14           Tetratricopeptide repeat
        3.5    8.4  10.1         35    5.2   0.0    3.8  4  TPR_16           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.9   7.8   9.2e-85   1.6e-81       1     202 [.      28     236 ..      28     237 .. 0.98

  Alignments for each domain:
  == domain 1  score: 272.9 bits;  conditional E-value: 9.2e-85
                 ----HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSC.. CS
        YfiO   1 pdktaselYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarell.. 97 
                 pd+++se+Y ++q++lq+g++++Aik+leald+ryPf+py++q+qldliyAyyk+ad+++a+a++ rF+rl+Pth+n+dyv+Y++gl+++a +++ l  
  EHT99239.1  28 PDNPPSEIYATAQQKLQDGNFKAAIKQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPMAQAAISRFMRLNPTHPNIDYVIYMKGLTDMALDDSALqg 126
                 6899***********************************************************************************999999999999 PP

                 .....TTTS-THHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT CS
        YfiO  98 .....rskrdpesarqafedfkklvekyPdseYaadakkrltelrerLArhElevaefylkreayvaainRvkevlknypdtesveeaLaimveayral 191
                      rs+rdp++ar+af+df++l++ yP+s+Yaada kr ++l++rLA++El+va+fy+kr+ayva++nRv+ ++++ypdt+++++aL +m++ayr+l
  EHT99239.1 127 ffgidRSDRDPTHARDAFRDFAQLLRSYPNSQYAADAYKRQVFLKDRLAKYELSVAQFYTKRGAYVAVVNRVEGMMRDYPDTQATHDALPLMENAYRQL 225
                 99999********************************************************************************************** PP

                 T-HHHHHHHHH CS
        YfiO 192 gleaaaeeaak 202
                 +l+a+a++ ak
  EHT99239.1 226 QLNAEADKVAK 236
                 ******99876 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   6.0   1.1e-69   1.9e-66       2     144 ..      24     166 ..      23     167 .. 0.99
   2 ?    3.9   0.2     0.029        52      17      74 ..     182     238 ..     173     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 222.6 bits;  conditional E-value: 1.1e-69
      TPR_18   2 keavpdvpeaelyqeaqkaldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldks 100
                 ++avpd+p++e+y++aq++l++gn++ ai+qLeald+ryPfG+Y++q+qLDLiYa+yk++d+++a+a+i rf+rlnP+hp+iDyv+Y++gl++mald+s
  EHT99239.1  24 NDAVPDNPPSEIYATAQQKLQDGNFKAAIKQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPMAQAAISRFMRLNPTHPNIDYVIYMKGLTDMALDDS 122
                 689************************************************************************************************ PP

      TPR_18 101 slqslvsldrsdrdteaakaafrdfkrLlsryPnseYaaDaakr 144
                 +lq ++ +drsdrd+++a++afrdf +Ll+ yPns+YaaDa kr
  EHT99239.1 123 ALQGFFGIDRSDRDPTHARDAFRDFAQLLRSYPNSQYAADAYKR 166
                 *****************************************998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.029
      TPR_18  17 aqkaldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfi 74 
                 aq   ++g y+  ++++e +   yP  + a   +L L+   y++ ++++ + ++++ i
  EHT99239.1 182 AQFYTKRGAYVAVVNRVEGMMRDYPDTQ-ATHDALPLMENAYRQLQLNAEADKVAKII 238
                 5556678999999999999999999876.55667999999999998888777766655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.3    0.0032       5.7       7      31 ..      37      63 ..      35      64 .. 0.87
   2 ?    1.2   0.1      0.42   7.5e+02       5      32 ..      74     101 ..      70     102 .. 0.74
   3 !    8.6   0.0    0.0018       3.2      15      33 .]     139     157 ..     109     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0032
                HHHHHH.H.HHHHHHHHHHHHHHHH-T CS
       TPR_6  7 alsyrk.l.gdtdkAlealerlikeYP 31
                a +++k + g+  +A++ le l ++YP
  EHT99239.1 37 ATAQQKlQdGNFKAAIKQLEALDNRYP 63
                7788884578****************9 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.42
                 HHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrk.lgdtdkAlealerlikeYPd 32 
                  l ++y+k + d   A +a  r+ +  P+
  EHT99239.1  74 DLIYAYYKnA-DLPMAQAAISRFMRLNPT 101
                 5667999955.999999988888887775 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHH-TT- CS
       TPR_6  15 dtdkAlealerlikeYPdS 33 
                  +++A + + +l+++YP+S
  EHT99239.1 139 HARDAFRDFAQLLRSYPNS 157
                 57889999**********9 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0015       2.6      21      49 ..      30      58 ..       6      65 .. 0.85
   2 !    8.8   0.0    0.0011       1.9      29      62 ..      75     109 ..      62     115 .. 0.90
   3 ?   -0.9   0.0       1.1     2e+03       5      35 ..     164     187 ..     160     203 .. 0.59
   4 ?   -2.2   0.1       2.7   4.9e+03       2      18 ..     208     224 ..     207     233 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
                --HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3 21 espedayllAlclylngqykrAyellrka 49
                + p+ +y+ A+  +++g++k A++ l+ +
  EHT99239.1 30 NPPSEIYATAQQKLQDGNFKAAIKQLEAL 58
                56788********************9987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0011
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHH CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylf 62 
                 l +++y+n +   A+  ++++ +ln++++++ y++
  EHT99239.1  75 LIYAYYKNADLPMAQAAISRFmRLNPTHPNIDYVI 109
                 5799****************************986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHH CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclyl 35 
                 yk  +fl +rl ++        +  A+ + +
  EHT99239.1 164 YKRQVFLKDRLAKY-------ELSVAQFYTK 187
                 56666666666621.......1122444444 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.7
                 TT-HHHHHHHHHHHH.H CS
      ANAPC3   2 qnnyknAiflaerllaa 18 
                 ++++++A+ l e ++ +
  EHT99239.1 208 TQATHDALPLMENAYRQ 224
                 56788899999988833 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3   1.1e-05     0.019      39     103 ..      32      96 ..       5     125 .. 0.86
   2 ?   -0.9   0.0      0.65   1.2e+03      55      76 ..     140     161 ..     120     164 .. 0.76
   3 ?   -2.9   0.0       2.7   4.8e+03      41      50 ..     220     229 ..     186     240 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
      TPR_21  39 AsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvl 103
                  s++Y + q+++++++ ++a ++ e+l ++y+  +Y ++ +L l  a +++ dl  A+a++++ +
  EHT99239.1  32 PSEIYATAQQKLQDGNFKAAIKQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPMAQAAISRFM 96 
                 589********************************************************998765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.65
      TPR_21  55 aakakeaaeeladeyggtaYaa 76 
                 a +a + +++l  +y++++Yaa
  EHT99239.1 140 ARDAFRDFAQLLRSYPNSQYAA 161
                 3456677888999999999997 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.7
      TPR_21  41 alYqqlqeav 50 
                 ++Y qlq ++
  EHT99239.1 220 NAYRQLQLNA 229
                 2344443333 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.3e-05     0.077      95     185 ..     104     195 ..      90     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.3e-05
                      HHHHHHHHCTHTTSB--SH.TTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHHHHHHHHHT-STT.TTTTTTTTTTSEEEEEEEEETTEE CS
  Beta-lactamase2  95 avnawlkelglretrlrrk.lpdleaadkdkrntttardlarllealargellspeelleilsnqqfr.drlaaglpegvrvahKtGeldgvr 185
                      +++ ++  +gl++++l+ + l+++ + d++ r+ t ard+ r +++l r  + s+ ++ ++ ++q f  drla++    ++++ K G + +v 
       EHT99239.1 104 NIDYVIYMKGLTDMALDDSaLQGFFGIDRSDRDPTHARDAFRDFAQLLRSYPNSQ-YAADAYKRQVFLkDRLAKYELSVAQFYTKRGAYVAVV 195
                      66666667789999998886778889999**************************.6******999954999999667889999999865554 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00069       1.2      24      54 ..      27      57 ..       5      71 .. 0.88
   2 ?    1.1   0.0      0.25   4.4e+02       5      29 ..      79     103 ..      75     107 .. 0.78
   3 ?   -1.8   0.2         2   3.5e+03      47      62 ..     142     157 ..     136     167 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00069
       TPR_9 24 laPddpeerrdRGlllaqlGclsaAladLea 54
                ++ ++p+e++  ++   q G+++aA++ Lea
  EHT99239.1 27 VPDNPPSEIYATAQQKLQDGNFKAAIKQLEA 57
                47799************************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.25
       TPR_9   5 aireedweralavverllllaPddp 29 
                 +  + d + a a++ r + l+P +p
  EHT99239.1  79 YYKNADLPMAQAAISRFMRLNPTHP 103
                 5566777888889999999999888 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2
       TPR_9  47 aAladLeaylalapda 62 
                  A +d+ + l+  p+ 
  EHT99239.1 142 DAFRDFAQLLRSYPNS 157
                 3445555555555543 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   6.8e-05      0.12       2      60 ..      43     104 ..      42     109 .. 0.86
   2 ?    0.0   0.1      0.71   1.3e+03      49      62 ..     148     160 ..     134     167 .. 0.61
   3 ?    2.0   0.1      0.17     3e+02       8      19 ..     212     223 ..     185     239 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.8e-05
      TPR_19   2 laegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddar 60 
                 l++g++ +A++ le++   +p    ++ ++l+L+ a++++ +l  A+a++++ ++ +p +++
  EHT99239.1  43 LQDGNFKAAIKQLEALDNRYPFgpySQQVQLDLIYAYYKNADLPMAQAAISRFMRLNPTHPN 104
                 799************8555433555*************************999999988765 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.71
      TPR_19  49 dalpeedpddarya 62 
                 ++l++++p+ ++ya
  EHT99239.1 148 AQLLRSYPN-SQYA 160
                 445555555.3333 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
      TPR_19   8 aeAlalleqalq 19 
                  +Al+l+e+a+ 
  EHT99239.1 212 HDALPLMENAYR 223
                 344444444443 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0014       2.4       5      31 ..      36      62 ..      32      77 .. 0.81
   2 ?    1.6   0.0      0.37   6.6e+02       3      35 ..      71     103 ..      69     108 .. 0.86
   3 ?    0.9   0.1      0.61   1.1e+03      15      34 ..     135     157 ..     130     168 .. 0.63
   4 ?   -2.0   0.0       5.5   9.8e+03       8      22 ..     182     196 ..     170     215 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
      TPR_14  5 lalaeallalGdpdeAiallrralala 31
                +a a+  l+ G++++Ai+ l+++  ++
  EHT99239.1 36 YATAQQKLQDGNFKAAIKQLEALDNRY 62
                7889999**************986555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.37
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 ++l+l  a++ + d+  A a+  r  +l+P+++
  EHT99239.1  71 VQLDLIYAYYKNADLPMAQAAISRFMRLNPTHP 103
                 579999999999999999999999888898876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.61
      TPR_14  15 GdpdeAiallrr...alalaPdd 34 
                 +dp  A++++r+   +l+ +P++
  EHT99239.1 135 RDPTHARDAFRDfaqLLRSYPNS 157
                 57777888887722234445555 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5.5
      TPR_14   8 aeallalGdpdeAia 22 
                 a+++  +G + + ++
  EHT99239.1 182 AQFYTKRGAYVAVVN 196
                 555555555544444 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.046        83       4      23 ..      39      58 ..      36      66 .. 0.64
   2 ?    5.2   0.0     0.019        35       1      32 [.      73     104 ..      73     130 .. 0.82
   3 ?    3.1   1.4     0.084   1.5e+02      13      39 ..     140     166 ..     132     191 .. 0.79
   4 ?   -2.4   0.1       4.4   7.9e+03      15      32 ..     213     227 ..     211     232 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.046
      TPR_16  4 araalragdyddAaaaleaa 23
                a+  l+ g++ +A+++lea+
  EHT99239.1 39 AQQKLQDGNFKAAIKQLEAL 58
                55567777777777777543 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd 32 
                 l+l +a++++ d + A+aa  ++ +++p +P 
  EHT99239.1  73 LDLIYAYYKNADLPMAQAAISRFMRLNPTHPN 104
                 68899**********************99985 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.084
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAlll 39 
                  +dA + + ++l+++p s  aa+A+  
  EHT99239.1 140 ARDAFRDFAQLLRSYPNSQYAADAYKR 166
                 5788899********999889999866 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.4
      TPR_16  15 dAaaaleaalkrdpssPd 32 
                 dA+++ e a ++     +
  EHT99239.1 213 DALPLMENAYRQL---QL 227
                 7888888877765...44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1761.58
//
Query:       EHT99240.1  [L=110]
Description: cold shock protein associated with 30S ribosomal subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-23   82.2   0.2      4e-23   82.0   0.2    1.1  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma
  ------ inclusion threshold ------
      0.012   15.0   0.1      0.013   14.9   0.1    1.0  1  YjcZ             YjcZ-like protein
      0.048   14.1   0.2      0.066   13.6   0.2    1.1  1  DUF1690          Protein of Unknown function (DUF1690)


Domain annotation for each model (and alignments):
>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.2   6.8e-27     4e-23       1      84 [.       3      91 ..       3      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 6.8e-27
                     EEEEECTS---HHHHHHHHHHHCCGGGG....-EEEEEEEEE....EEEEEEEEECTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHT CS
  Ribosomal_S30AE  1 ieitgrnievtdalkeyvekkleklekyf...ieadVtlskk....kkvevtirlakgkviraeeesedlyaaidlavdklerqlrkykek 84
                     ++it++++e+t+a++e+ve++l+klek     i+ +++ls k    + +++ti+++ + ++ a+++++d+y+ai++++ klerql k+++k
       EHT99240.1  3 VNITSKQMEITPAIREHVEDRLAKLEKWQtdlINPHIVLS-KeskeFVADATINTP-NGTLVASAKHDDMYTAINDLIGKLERQLNKVQHK 91
                     69************************994456********.33558*******776.6666667889********************9987 PP

>> YjcZ  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.2e-06     0.013      37     135 ..       5     101 ..       1     105 [. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-06
        YjcZ  37 tqlraseinaevnaalelrLkllekLsreldpghLALttiaqrlallsqtlaekasaapklaqalaalaeefaarverkekaltqrellvqarrhseqi 135
                 +  +++ei++ + +++e rL  lek    l   h+ L++ ++++      ++++++ +   + + + +++ ++  + ++e++l +++ + +arr ++ +
  EHT99240.1   5 ITSKQMEITPAIREHVEDRLAKLEKWQTDLINPHIVLSKESKEFVADATINTPNGTLVA--SAKHDDMYTAINDLIGKLERQLNKVQHKPEARRAASSV 101
                 567899************************************************99998..5566889999***********************99876 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.1e-05     0.066      26     102 ..       7      95 ..       4     106 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
     DUF1690  26 sraqalekliqerVaeeLkkLraeeeetlkkfeeklekellkde...............adakdelsskalnekieeLrkkleefkkkeeek 102
                 s++ ++   i+e V+++L+kL   e+ + + ++ ++  ++ ++e               a+ak+    +a+n+ i +L+++l+++++k e++
  EHT99240.1   7 SKQMEITPAIREHVEDRLAKL---EKWQTDLINPHIVLSKESKEfvadatintpngtlvASAKHDDMYTAINDLIGKLERQLNKVQHKPEAR 95 
                 556667789************...76666777776666666666678889999996666555666666666666666666666655554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 867.79
//
Query:       EHT99241.1  [L=387]
Description: chorismate mutase I/prephenate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-61  205.8   0.0    7.7e-61  205.1   0.0    1.3  1  PDT       Prephenate dehydratase
    6.2e-15   55.3   2.7    1.5e-14   54.1   2.7    1.7  1  CM_2      Chorismate mutase type II


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.0   8.5e-65   7.7e-61       1     182 [.     106     287 ..     106     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 8.5e-65
                 EEEES-TTSHHHHHHCCCS.......EEEEES-HHHHHHHHCTTS-SEEEEEEEESSS-B-HHHHHHHHH.SSEEEEEEEEEE---EEEE-TT--TTT- CS
         PDT   1 vaylGpegtyshqAalkvf..kaedvelipvasieevfeavekgeadyavvPiENsteGsVnetlDlLlkesdlkivgEvvlpiehcLlakpktkleei 97 
                 +a+lGp+g+ysh Aa++++  + +++  + + ++++++++ve++ adyav+PiEN+ +Gs+n+++DlL++ ++l+ivgE++lpiehc+l++  ++le+i
  EHT99241.1 106 IAFLGPKGSYSHLAARQYAarHFDSMVECGCLKFHDIIKQVENNAADYAVLPIENTSSGSINDVYDLLQQ-TNLSIVGEMTLPIEHCMLVSGPSDLEQI 203
                 89****************96656667778899**************************************.89************************** PP

                 -EEEE-HHHHHHTHHHHHH-.TTSEEEE-S-HHHHHHHHHHCT-TTEEEEE-HHHHHHTT-EEEECS-SS-S--EEEEEEEEETT CS
         PDT  98 kkvyShpqalgQcrkfLeehlpqvervavestaeAakkveassdkdaaaiasevaaelyglkvleeniedkknntTRFlvlakee 182
                 ++vyShpq ++Q+++f+++  p++++v++esta+A++kv+a ++ ++aai+se   ely+l+vle+++ ++++n+TRF+vla+++
  EHT99241.1 204 ETVYSHPQPFQQSSHFINRF-PHWNIVYTESTAAAMEKVAALNSPKVAAIGSEAGGELYQLRVLERHLANQQQNHTRFIVLARKP 287
                 ******************99.*************************************************************986 PP

>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   2.7   1.6e-18   1.5e-14       1      75 []      11      89 ..      11      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 1.6e-18
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH.HH...S-HHHHHHHHHHHHHHHHHHHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerlee.ga...ldeeaierifreiisasralqk 75
                R++I ++D+++l LLaeR  la ev+e+K +++ pv+d eRe++++e+l   g+   ld+++i+r+f+ +i+ s+  q+
  EHT99241.1 11 REKISAVDEKLLTLLAERRLLAVEVAEAKLATHRPVRDIERERALIEHLIVlGKkhqLDAHYITRLFQLVIEDSVLTQQ 89
                99***************************99999*****************933467*****************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 3532.34
//
Query:       EHT99242.1  [L=373]
Description: chorismate mutase I/cyclohexadienyl dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-30  104.7   0.0    6.3e-30  104.0   0.0    1.3  1  PDH       Prephenate dehydrogenase
    5.8e-21   74.6   0.2    1.3e-20   73.5   0.2    1.6  1  CM_2      Chorismate mutase type II
  ------ inclusion threshold ------
       0.21   11.1   0.0       0.32   10.5   0.0    1.2  1  NmrA      NmrA-like family


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   1.1e-33   6.3e-30      41     256 ..     138     343 ..     122     345 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 1.1e-33
                 GGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES---S-SSGGG--TTTTTT-EEEEEE-TTS-HHHH CS
         PDH  41 eavkeadivvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgghPmaGteksGvdaareelfenavviLtPtektdkeal 139
                   + +a +v+++vP++ ++ v++ l p l  d++++D++svK+++ +++ +  +    + g hPm+G+           ++ ++vv+ ++    ++ea 
  EHT99242.1 138 TLLADAGMVMISVPIHLTEAVINRLPP-LPDDCILVDLASVKHRPLQAMLAAHR--GPVLGLHPMFGP--------DSGSLAKQVVVWCDGR--QPEAY 223
                 4678899********************.********************998888..89**********........889***********99..55788 PP

                 HHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCGTCCHHHHH....CGGGS-HHHHHHHHHHTHHHHHHHHHHHH CS
         PDH 140 ekvkelleevgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirklasggfrdvt....RiaksnPelwadilleNkeavlealdkfi 234
                 +   e ++  gar+  + +eeHD+ +a+++ l h++ +a    l+e++++  ++  l+s+++r+      R+ +++P+l+adi++  ++  l+ ++ + 
  EHT99242.1 224 QWFLEQIQVWGARLHRIGAEEHDQNMAFIQALRHFATFAYGLHLAEENVNLDQLLALSSPIYRLELamvgRLFAQDPQLYADIIMSSEN-NLNLIKRYY 321
                 8888999999*****************************************************9766789***************9888.7899***** PP

                 HHHHHHHHHHHTT-HHHHHHHH CS
         PDH 235 kelkklkelienedaeeLvell 256
                 +   ++ +l+e++d+  +++ +
  EHT99242.1 322 QRFGEAIALLEQGDKHAFIASF 343
                 **************99998766 PP

>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.2   2.2e-24   1.3e-20       1      74 [.       9      86 ..       9      87 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 2.2e-24
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHHHH....S-HHHHHHHHHHHHHHHHHHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerleega....ldeeaierifreiisasralq 74
                R++Id +D+ +l+LLa+R+el+ evge+K+++glpvy peRea +l+ ++++a    ++++ ie+++r ++++s a +
  EHT99242.1  9 REQIDTVDKALLDLLAKRLELVAEVGEVKSRHGLPVYVPEREASMLASRRKEAealgVPADLIEDVLRRVMRESYASE 86
                9**************************************************556689*****************9987 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.4e-05      0.32       1      49 [.     101     149 ..     101     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.4e-05
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEE CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvk 49 
                 I++iG+ G++G+ + ++l+ +g+ v+ l +d   ++ + l++aG ++++
  EHT99242.1 101 IVIIGGEGQMGRLFNKMLTLSGYAVKTLDKDDWDKADTLLADAGMVMIS 149
                 89******************************99999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2752.09
//
Query:       EHT99243.1  [L=359]
Description: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     8e-105  349.6   0.0   9.9e-105  349.3   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.3   0.0  5.5e-109  9.9e-105       8     274 ..      39     340 ..      26     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 349.3 bits;  conditional E-value: 5.5e-109
                   H.....HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.......... CS
  DAHP_synth_1   8 a.....adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.......... 89 
                   a     adi++G+d rllv++GPCsi+d eaal+yA+rlk l+e ++d+l+++mr+yfeKp r+tvg+kGlindp ++++++ +++l          
    EHT99243.1  39 AsrqtiADIIAGRDPRLLVVCGPCSIHDTEAALDYARRLKTLSETVSDQLYLVMRVYFEKP-RTTVGWKGLINDPYMDNSFDMEAGLhiarellvnl 134
                   0344579******************************************************.9********************************** PP

                   ...T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEE CS
  DAHP_synth_1  90 ...glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilce 170
                      glp+ate+ldp+s+qyl d++++ +iGArttesq+++e+asgls+pvg+Kngtd    +ai++m+aaa ++ f+g+         +t+g+++++
    EHT99243.1 135 vdmGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDgslgTAINAMRAAAMPHRFVGInqsgqvcllQTQGNPDGH 231
                   ************************************************************************************************* PP

                   EEEEESTSSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST.GGGGBBCTCBHHH CS
  DAHP_synth_1 171 rglrggkktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd.gkqalkygksetd 262
                   ++lrggk++n+  edva++++++ ++g    +m+D+sH+ns kdy+rq+ v+++a a+i++G   i+G+m+Esh+++g+++s+  ++++kyg+s+td
    EHT99243.1 232 VILRGGKAPNYIPEDVAQCEAAMLKAGLRpALMIDCSHGNSDKDYRRQPGVAESAVAQIKQGnrsIIGLMLESHIHEGNQSSEqPRSEMKYGVSVTD 328
                   *******************999888875579****************************************************7889********** PP

                   HHHHHHHHHHHH CS
  DAHP_synth_1 263 acilkeltelll 274
                   aci++++te+ll
    EHT99243.1 329 ACINWQVTEDLL 340
                   ********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2835.83
//
Query:       EHT99244.1  [L=175]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-20   74.5   0.1    1.5e-20   74.3   0.1    1.0  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    3.2e-09   37.0   0.0    4.1e-09   36.7   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.068   13.1   0.0    1.9  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.054   13.2   0.0      0.071   12.8   0.0    1.2  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
      0.087   12.8   0.0       0.17   11.9   0.0    1.4  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   4.2e-24   1.5e-20       2     136 ..       8     147 ..       7     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 4.2e-24
  Acetyltransf_3   2 LlLrplteeDleal.felrsdpe.vmrylpe...pltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsf 91 
                     + Lrp++  D+ea+ +++++  + +  ++++   ++ ++eae+w++ +  +++ +e+  +aiv+ +++ +G +g+r ++e  + + lgy++++ +
      EHT99244.1   8 IRLRPFQLNDVEAFtAAVNASLDtLLPWMSWaheNYQPHEAESWIRFTHLQRAVRESEEFAIVDAQDRLLGGAGFRFASEPGTLCSLGYWVRSNA 102
                     68************5555554443445655577799**********4433456667788***9988867*******98888888*********** PP

  Acetyltransf_3  92 wgkGyateavralleyafeelglerlvavidkeNeaSirvleklG 136
                     +++G+at av+ lle+ f+++++++++  + ++N aS+rv+ek G
      EHT99244.1 103 QRQGVATQAVKLLLEFGFARPDVQTIELLAVENNYASRRVAEKSG 147
                     *******************************************99 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.2e-12   4.1e-09       7     116 ..      38     147 ..      31     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.2e-12
                     HHHHHTHHHHHHHHHHH..HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEE CS
  Acetyltransf_1   7 llvesffppnedaseee..feesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkiv 98 
                     ++ e +  p+e +s  +  + +++ +e e++ ++   ++l+G ++++   +  +g+    +++V+++++++G++++ ++ l+e+ + +  ++ i+
      EHT99244.1  38 WAHENYQ-PHEAESWIRftHLQRAVRESEEFAIVDAQDRLLGGAGFRFASE--PGTLCSLGYWVRSNAQRQGVATQAVKLLLEFGFARpDVQTIE 129
                     4444443.34444444444444466677788889999**************..6777777****************************999***8 PP

                     E.EEETTEHHHHHHHHHTT CS
  Acetyltransf_1  99 l.aveedndaairlYeklG 116
                     l av e+n a++r+ ek G
      EHT99244.1 130 LlAV-ENNYASRRVAEKSG 147
                     8466.99*******99966 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.068       5      79 ..      43     118 ..      39     139 .. 0.72
   2 ?    1.3   0.0     0.088   3.2e+02      52      70 ..     126     144 ..     117     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
  Acetyltransf_10   5 yseegietfkefispealrerieegealllvaeeggkivGvi..el.rdgshisll..fVdpeyrgqGigkaLleaveee 79 
                      y++ ++e + +f    +l++ +  ++  + +++ +++++G +  +  ++ + ++ l   V++++++qG++++ ++ ++e 
       EHT99244.1  43 YQPHEAESWIRF---THLQRAV-RESEEFAIVDAQDRLLGGAgfRFaSEPGTLCSLgyWVRSNAQRQGVATQAVKLLLEF 118
                      556666666444...7788888.556667888889999998845555566699999989************977777666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.088
  Acetyltransf_10  52 shisllfVdpeyrgqGigk 70 
                      + i+ll+V+++y ++ +++
       EHT99244.1 126 QTIELLAVENNYASRRVAE 144
                      589*********9998886 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     2e-05     0.071      29     106 ..      56     138 ..      35     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
        PanZ  29 aleaalteegalfaarFNdRlLgAvkveledkeaelsdl..cVRevTRrRGVgsy...LleearrqaPevkswvlaeedvkel 106
                  l++a+ e++++ +    dRlLg++  ++  + ++l +l   VR    r GV+     Ll e     P+v++  l   + + +
  EHT99244.1  56 HLQRAVRESEEFAIVDAQDRLLGGAGFRFASEPGTLCSLgyWVRSNAQRQGVATQavkLLLEFGFARPDVQTIELLAVENNYA 138
                 68999999999999999*******************987547**********9761125566666779998888776665554 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.17      28      81 ..      97     152 ..      79     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
                 EE-GGG-SSSHHHHHHHHHHH.HHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  28 qvlpehrrrGlgsrlvkalak.eiae.rgktvllvvvasNtpsirlyeklGfekie 81 
                  v+ +++r+G +++ vk l + + a+   +t+ l++v++N +s+r+ ek G++ i+
  EHT99244.1  97 WVRSNAQRQGVATQAVKLLLEfGFARpDVQTIELLAVENNYASRRVAEKSGGRFID 152
                 48999************98874778878899******************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1433.67
//
Query:       EHT99245.1  [L=184]
Description: hypothetical protein CKS_1243 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   12.7   0.0      0.059   12.7   0.0    1.2  1  7tm_1     7 transmembrane receptor (rhodopsin family)
      0.057   13.5   1.1       0.17   12.0   1.1    1.7  1  CcmD      Heme exporter protein D (CcmD)
      0.078   13.0   0.5       0.19   11.8   0.0    1.9  2  DUF4752   Domain of unknown function (DUF4752)
       0.53    9.5   4.0       0.77    9.0   4.0    1.1  1  DUF3273   Protein of unknown function (DUF3273)


Domain annotation for each model (and alignments):
>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.059     113     188 ..      10      89 ..       4     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHCEECC.CTTTTCCEEECSSST..HHHHHHH..HHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHSHCCH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 113 slllsvpllvletvet.naedttkdCqittle..esvyiif..savlsfilPllvivilyarifrtvlktsrtktskskng 188
                  +lls+  +        + +++   C i t     +v+++f  +  ++ + P+l+ v l++ i+++ +++++++++k+++ 
  EHT99245.1  10 GFLLSIASFRSARY-AlEGNSNLWLCRILTVLwsLMVFVLFplFLAIGLYGPALILVALNLIIVWAGREHRKEMARKKQKA 89 
                 45555555533332.235555566788888775533444441134456778*************************88876 PP

>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   3.8e-05      0.17      15      41 ..      61      87 ..      61      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
        CcmD 15 llvlagLilwslrdrrrllrelrrlea 41
                +l+l++L l +++ +r  ++e++r+ +
  EHT99245.1 61 ALILVALNLIIVWAGREHRKEMARKKQ 87
                799*********************987 PP

>> DUF4752  Domain of unknown function (DUF4752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.85   3.8e+03      38      47 ..      80      89 ..      66      94 .. 0.58
   2 ?   11.8   0.0   4.2e-05      0.19      33      76 ..     125     171 ..     105     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.85
     DUF4752 38 rkkkekrqkA 47
                ++   k+qkA
  EHT99245.1 80 KEMARKKQKA 89
                2333455555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.2e-05
     DUF4752  33 KqwekrkkkekrqkAlnefy...daFdldslepGstirvatkgdlvi 76 
                 ++ +   ++ +  k    fy    aF+ld++e G +i+  t++ +++
  EHT99245.1 125 QRVDVESCDGRFIKGYSHFYrelRAFELDRIEYGMVIVWRTNESMTV 171
                 5555566666667777777743359******************9987 PP

>> DUF3273  Protein of unknown function (DUF3273)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.0   0.00017      0.77     164     229 ..      11      74 ..       5      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00017
     DUF3273 164 llyglavfllEvYhdeGagellgylnlvlfvlagllellvlilfkvlgalytllllvalvaatlWa 229
                 +l+++a f    Y  eG ++l  +l+ +l vl +l+ ++   lf  +g +   l+lval ++ +Wa
  EHT99245.1  11 FLLSIASFRSARYALEGNSNL--WLCRILTVLWSLMVFVLFPLFLAIGLYGPALILVALNLIIVWA 74 
                 667777777778888998887..8***********99999989**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1490.63
//
Query:       EHT99246.1  [L=115]
Description: 50S ribosomal subunit protein L19 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-50  168.4   4.2    4.4e-50  168.3   4.2    1.0  1  Ribosomal_L19  Ribosomal protein L19
  ------ inclusion threshold ------
        0.1   13.1   0.0       0.14   12.6   0.0    1.3  1  MG2            MG2 domain


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   4.2   4.9e-54   4.4e-50       1     111 []       3     113 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 4.9e-54
  Ribosomal_L19   1 nlikeiekeqlkkdlpefkvGdtvkVkvkikegkkeRiqafeGvviarkgkgisetftvRkisegvgvervfplhspkiekievvrrgkvrrakLy 96 
                    n+ik+ie+eq+k+d+p+f++Gdtv+Vkv ++eg+k+R+qafeGvvia +++g+++ ftvRkis+g+gvervf++hsp i++i v rrg vr+akLy
     EHT99246.1   3 NIIKQIEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSIAVKRRGAVRKAKLY 98 
                    68********************************************************************************************** PP

  Ribosomal_L19  97 YLrelkgkaarikek 111
                    YLre++gk+arike+
     EHT99246.1  99 YLRERTGKSARIKER 113
                    *************96 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05      0.14      11      52 ..      20      62 ..      14      80 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
                E-TT-EEEEEEEEES.TTCSB---EEEEEEEE-TTSSEEEEEE CS
         MG2 11 YrPgetVslkallrd.etlqglaklplkltirdpdgkevkelp 52
                +rPg+tV++k+ + + ++ +  a+  + + ir+ +    ++ +
  EHT99246.1 20 FRPGDTVEVKVWVVEgSKKRLQAFEGVVIAIRNRGLHSAFTVR 62
                8************986444555556688888877766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:01.30
# Mc/sec: 267.08
//
Query:       EHT99247.1  [L=253]
Description: tRNA (guanine-1-)-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-72  242.3   0.0    3.9e-72  242.1   0.0    1.1  1  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.1   0.0   2.2e-76   3.9e-72       2     195 .]      23     221 ..      22     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 242.1 bits;  conditional E-value: 2.2e-76
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGH..HC.GG-TTEEEESSCGGHHHHCCCHHHCGGGEEEEETTTSSBEC CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesv..nt.ekwkvilltptGkkftqelaeeLsekeklvylcgdyegvde 96 
                  ++a +++l+s++++ +rd+t++r++tvdd++yggg+gm ++++p  +a+ ++  ++ e+ +vi+l+p+G+k++q+++ eL++++kl+++cg+yeg+de
   EHT99247.1  23 GRAVKNGLLSVQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAISAAkaAAgEGARVIYLSPQGRKLDQQGVCELASRDKLILVCGRYEGIDE 120
                  799***********************************************99752269**************************************** PP

                  CGGTTSSE.EEEEESSSSTTCSTTHHHHHHHHHHHHTTTC..EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHHHHHHHHHSC CS
  tRNA_m1G_MT  97 rvdddkvd.eysIGdfVlkggekgalvlidavkrllaGvl.ntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrlkealertvp 192
                  rv+++ +d e+sIGd+Vl+gge++a+++idav+r ++Gvl ++as  edsfs+++l++p+ytrp+ l+g++Vp++Llsgnha i++Wrlk++l rt+ 
   EHT99247.1 121 RVIQTEIDeEWSIGDYVLSGGELPAMTMIDAVARFIPGVLgKQASADEDSFSEGWLDCPHYTRPEVLEGMEVPPVLLSGNHADIRQWRLKQSLGRTWL 218
                  *******99***************************************************************************************** PP

                  SXS CS
  tRNA_m1G_MT 193 rRk 195
                  rR+
   EHT99247.1 219 RRP 221
                  **7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1923.87
//
Query:       EHT99248.1  [L=182]
Description: 16S rRNA processing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-27   95.1   0.0    3.1e-27   94.6   0.0    1.3  1  RimM      RimM N-terminal domain
    3.3e-08   33.5   0.5    6.6e-08   32.5   0.5    1.5  1  PRC       PRC-barrel domain
  ------ inclusion threshold ------
      0.033   14.2   0.0      0.055   13.5   0.0    1.4  1  DUF2846   Protein of unknown function (DUF2846)


Domain annotation for each model (and alignments):
>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   5.2e-31   3.1e-27       2      83 ..      16      96 ..      15      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 5.2e-31
                EEEEEEEETTTTEEEEEE-SSSGGGGGGSSSEEEE.ETTEEEEE-EEEEEEETTEEEEEETT--SHHHHHTTTT-EEEEETT CS
        RimM  2 vGkIvgahGlkGevkVkpftdfpealfkygrvlleakkgetreltvesvrvhkkgvivklegvddrdaAealkgaelfvprs 83
                +Gk ++a+G++G++kV++ t+++e++f+y++++++ + g+++++++ s+++h++++i+k++g+ddrdaA +l+++e++v+  
  EHT99248.1 16 LGKMGAAYGIRGWLKVFSSTEDAESIFDYQPWFIQ-RAGKWQQVELDSWKHHNQDLIIKVKGIDDRDAAAQLTNCEIQVDST 96
                8**********************************.9******************************************975 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.5   1.1e-11   6.6e-08       2      63 ..     104     167 ..     103     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.1e-11
                 EECCS---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT.....-EEEEEGG......CE CS
         PRC   2 defrasdliGkeVytedGeklGkVkDvvidekegrvralvvsvggflgigekevliPfd.....lav 63 
                 +e++  dl G++V++ +G +lGkV D+ +++++++v+ ++ + +  +  g  e liPf      + v
  EHT99248.1 104 GEYYWKDLMGCKVVNVEGYELGKVIDM-METGSNDVLVVKANLKDAF--GVQERLIPFLdeqviKKV 167
                 689***********************9.***************9876..588899**9965444333 PP

>> DUF2846  Protein of unknown function (DUF2846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.2e-06     0.055      17      50 ..      82     115 ..      77     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.2e-06
     DUF2846  17 lkeeaeapdvfvngkkigelankeYfvaevepGe 50 
                 ++ ++  ++++v+  ++  l+n+eY+++++++ +
  EHT99248.1  82 AAAQLTNCEIQVDSTQLPALENGEYYWKDLMGCK 115
                 5678899**********************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1474.25
//
Query:       EHT99249.1  [L=82]
Description: 30S ribosomal subunit protein S16 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-25   86.6   0.0      1e-24   86.4   0.0    1.1  1  Ribosomal_S16  Ribosomal protein S16


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   5.6e-29     1e-24       1      62 []       8      68 ..       8      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 5.6e-29
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.SEEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekkevelneerikyWlgvGAqpt 62
                   R+G+k+rPfY++vv+dsr++r+gr+iE++G++dP+a+ ++++ ++l+ +ri++W+g+GA ++
     EHT99249.1  8 RHGAKKRPFYQVVVTDSRNARNGRFIERVGFFDPIASGQAEA-LRLDLDRIEHWVGQGATLS 68
                   9*********************************99998875.****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 659.89
//
Query:       EHT99250.1  [L=453]
Description: Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-75  253.4   0.5      2e-75  252.7   0.5    1.3  1  SRP54          SRP54-type protein, GTPase domain
      5e-34  116.9   5.9      5e-34  116.9   5.9    3.1  3  SRP_SPB        Signal peptide binding domain
    2.4e-22   78.9   2.5    3.5e-22   78.4   0.2    2.6  2  SRP54_N        SRP54-type protein, helical bundle domain
    3.4e-07   30.4   0.0    2.3e-06   27.7   0.0    2.4  3  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
    6.4e-05   22.3   0.0    0.00013   21.3   0.0    1.5  1  Zeta_toxin     Zeta toxin
    0.00012   21.7   0.2    0.00034   20.2   0.2    1.7  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
    0.00022   21.0   0.9    0.00055   19.7   0.3    2.0  2  AAA_30         AAA domain
      0.001   19.0   0.5      0.012   15.5   0.2    2.4  2  AAA_31         AAA domain
     0.0013   19.0   0.0     0.0039   17.5   0.0    1.8  1  AAA_22         AAA domain
     0.0057   16.5   0.0      0.011   15.6   0.0    1.4  1  Helicase_RecD  Helicase
     0.0059   16.8   0.0      0.014   15.6   0.0    1.7  1  AAA_33         AAA domain
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.022   14.5   0.0    1.5  1  AAA_24         AAA domain
      0.015   14.6   0.0      0.033   13.5   0.0    1.6  1  VirC1          VirC1 protein
      0.016   15.3   0.2       0.13   12.4   0.1    2.6  3  Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
      0.033   14.3   0.0         14    5.9   0.0    2.6  2  Peptidase_C23  Carlavirus endopeptidase
      0.036   14.4   0.0       0.14   12.6   0.0    2.0  2  AAA_16         AAA ATPase domain
       0.05   13.5   0.0       0.16   11.9   0.0    1.9  1  APS_kinase     Adenylylsulphate kinase
       0.15   11.5   2.4       0.77    9.1   0.1    2.2  2  KTI12          Chromatin associated protein KTI12
       0.22   11.6   1.3        1.2    9.2   0.4    2.7  2  MMR_HSR1       50S ribosome-binding GTPase
        1.4    9.4   4.9        4.6    7.7   1.6    2.7  2  Wbp11          WW domain binding protein 11


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.7   0.5   2.3e-78     2e-75       1     196 []     100     296 ..     100     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.7 bits;  conditional E-value: 2.3e-78
                 SEEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTH CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqnd 98 
                 p v+l++GlqGaGKTt+++KL + l+++ +kkvl+v+aD++R+aA++QL+tla+++gv+++ ++  ++p++++++a+++ak + +dv+lvDTaGrl+ d
  EHT99250.1 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREAKLKFYDVLLVDTAGRLHVD 198
                 579***********************99899******************************************************************** PP

                 HHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54  99 kelmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 +++m+e+k+++ +++p e+l+v+da+tgq+a+++akaF+ea+ +tgviltk+Dgda+gGaalsi++ +++Pikf+g+Gek++ le+f p+r++sr+lg
  EHT99250.1 199 EAMMDEIKQVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMGEKTDALEAFYPDRIASRILG 296
                 ************************************************************************************************95 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.4   1.2e+03      46      67 ..     216     237 ..     196     245 .. 0.76
   2 ?   -2.1   0.0       6.8   6.1e+03      13      37 ..     293     317 ..     289     325 .. 0.61
   3 !  116.9   5.9   5.6e-37     5e-34       2      99 .]     329     427 ..     328     427 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.4
                 HHHHHHTTSBHHHHHSGCG-.. CS
     SRP_SPB  46 rieaiidSMTkeErdspekllk 67 
                 ++ +++d+MT +  +++ k ++
  EHT99250.1 216 ETLFVVDAMTGQDAANTAKAFN 237
                 4668899***999999888776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.8
                 HHHCCCCCCHHHHCCC.....H... CS
     SRP_SPB  13 qikkmGplskllsmiPgmsaeakae 37 
                 +i  mG++ +l++ i    + a+ae
  EHT99250.1 293 RILGMGDVLSLIEDIESKVDRAQAE 317
                 5778888888888888644444333 PP

  == domain 3  score: 116.9 bits;  conditional E-value: 5.6e-37
                 SCTHHHHHHHHHHHCCCCCCHHHHCCC.......H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH CS
     SRP_SPB   2 ftlrdlleqlqqikkmGplskllsmiPgmsae..akaeeeaekklkrieaiidSMTkeErdspekllkesRkrRiArGsGtsvqevnellkqfeqmkkm 98 
                 f+l+d+leql+q+++mG++ +l++++Pgm++   + ++++++k l r+eaii+SMT++Er++pe ++k sRkrRiA GsG++vq+vn+llkqf++m++m
  EHT99250.1 329 FDLNDFLEQLKQMRNMGGMASLMGKLPGMGQLpdNVKSQMDDKVLVRMEAIINSMTRKEREKPE-IIKGSRKRRIATGSGMQVQDVNRLLKQFDDMQRM 426
                 9***************************9988974455778999********************.9999****************************** PP

                 T CS
     SRP_SPB  99 m 99 
                 m
  EHT99250.1 427 M 427
                 9 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.2   3.9e-25   3.5e-22       1      75 []       5      82 ..       5      82 .. 0.96
   2 ?   -2.2   0.1       5.7   5.2e+03       7       7 ..     318     318 ..     300     342 .. 0.52

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 3.9e-25
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS....S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk....lkpkqqvkkivkdeL 75
                L+++l+++l+++sg+++++e++++++l+e+++aLleaDV+++vv+++i++vk++avg  +    l+p+q+++kiv++eL
  EHT99250.1  5 LTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKESAVG-HDvnksLTPGQEFIKIVRNEL 82
                799******************************************************.55488999***********98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.7
                 H CS
     SRP54_N   7 s 7  
                 +
  EHT99250.1 318 K 318
                 1 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.4   5.7e+03      74      87 ..      45      58 ..      20      88 .. 0.56
   2 !   27.7   0.0   2.6e-09   2.3e-06       9      89 ..     110     255 ..     102     275 .. 0.85
   3 ?   -1.7   0.0       3.1   2.7e+03      66      66 ..     364     364 ..     297     429 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.4
                ..EEEEEEEEESS. CS
                xxxxxxxxxxxxxx RF
        CbiA 74 lkiagvvlnrvdge 87
                l +++  +nrv+++
  EHT99250.1 45 LPVVRDFINRVKES 58
                33444444444444 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 2.6e-09
                 TSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH.................................................... CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
        CbiA   9 GvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep.................................................... 54 
                 G+GKTt + +L++ l + ++++Vl+v aD+ ++++   ++le   ++                                                    
  EHT99250.1 110 GAGKTTSVGKLGKFLREkHKKKVLVVSADVYRPAAI--KQLETLAQQvgvdfcpsdlsqkpvdivnnalreaklkfydvllvdtagrlhvdeammdeik 206
                 9***************978***************75..444444444999************************************************* PP

                 ...............CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS... CS
                 ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...............dlkrllellealgkkkalllkiagvvlnrvdgene 89 
                                d+   ++ +++  k ++ +l + gv+l++vdg+++
  EHT99250.1 207 qvhaainpvetlfvvDAMT-GQDAANTAKAFNEALPLTGVILTKVDGDAR 255
                 ******9999999995544.3333344444555599***********965 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.1
                 H CS
                 x RF
        CbiA  66 l 66 
                 +
  EHT99250.1 364 V 364
                 1 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.4e-07   0.00013      14      57 ..      98     143 ..      88     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.4e-07
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdele..rqgnvvrldpDdlRel 57 
                 + P+++l++G +GAGK++   +l + l+  ++++v+++++D +R+ 
  EHT99250.1  98 QPPAVVLMAGLQGAGKTTSVGKLGKFLRekHKKKVLVVSADVYRPA 143
                 679***************999888887776799***********75 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   3.8e-07   0.00034       2     151 ..     102     251 ..     101     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.8e-07
                 EEEEEESTTCCHHHHHHHHH...CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH..TT-SEEEEEECTTTT CS
        cobW   2 vtvltGflGsGKTtLlnhll...enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere..erldviliEttGlae 95 
                 v++++G  G+GKTt + +l    ++++++k+ v+  +++      + +++ ++ + ++    ++  l+++ +  +++ +++   + +dv+l+ t G ++
  EHT99250.1 102 VVLMAGLQGAGKTTSVGKLGkflREKHKKKVLVVSADVY----RPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREAklKFYDVLLVDTAGRLH 196
                 67899*********988876666****************....45566666677888888888888777776666666665557789*********888 PP

                 HHHHHTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW  96 Papvaft.eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                   + ++   ++++++++   +++vvDa    ++  ++++ +++ l  +  ++l+K+D
  EHT99250.1 197 VDEAMMDeIKQVHAAINPVETLFVVDAMTG-QDAANTAKAFNEALPLTG-VILTKVD 251
                 88875555889999999999*******665.788888888888888876.5678888 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   6.2e-07   0.00055      13     113 ..      95     216 ..      89     239 .. 0.73
   2 ?   -2.1   0.0         3   2.7e+03      62      83 ..     402     423 ..     394     440 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.2e-07
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptg...kaAkvLa...eelgi..........eastiakllkrlk....grarlepgt 90 
                 l++++  v+++ G  G+GKtt++++l + ++++ +++v++++      +a k+L+   +++g+          + + +++ l++ k    +   ++++ 
  EHT99250.1  95 LAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVyrpAAIKQLEtlaQQVGVdfcpsdlsqkPVDIVNNALREAKlkfyDVLLVDTAG 193
                 44455569******************9999988789999887653111333444433356665666555556688888888877779998667777888 PP

      AAA_30  91 llivDEagmvdtkqlaallkaae 113
                  l vDEa m  +kq++a ++ +e
  EHT99250.1 194 RLHVDEAMMDEIKQVHAAINPVE 216
                 88899998888888888776655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
      AAA_30  62 Laeelgieastiakllkrlkgr 83 
                 +a+++g++ + +++llk+ +++
  EHT99250.1 402 IATGSGMQVQDVNRLLKQFDDM 423
                 5555666666666666655522 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   1.3e-05     0.012      12      41 ..     110     140 ..     102     159 .. 0.87
   2 ?   -0.3   0.0      0.98   8.7e+02     105     129 ..     170     195 ..     163     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
      AAA_31  12 GvGKTTtsvnlaaala.klgkkvLlvDlDpQ 41 
                 G GKTT++ +l+++l  k +kkvL+v +D  
  EHT99250.1 110 GAGKTTSVGKLGKFLReKHKKKVLVVSADVY 140
                 89**************788899******975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.98
      AAA_31 105 eilkellekvkde.YDyiiiDcpPsL 129
                 +i++++l++ k + YD+ ++D+   L
  EHT99250.1 170 DIVNNALREAKLKfYDVLLVDTAGRL 195
                 567889999887669******98776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.4e-06    0.0039       9     115 ..     104     208 ..      98     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.4e-06
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav..ielliiDEaqhlr. 104
                 +  G  G+GKTt++ +l + l e   ++ +++ vv+ ++  +   k+l + l++++g++     + s+  ++ +++alr+++     +l++D a +l  
  EHT99250.1 104 LMAGLQGAGKTTSVGKLGKFLREK--HK-KKVLVVSADVYRPAAIKQL-ETLAQQVGVDFCP-SDLSQKPVDIVNNALREAKLkfYDVLLVDTAGRLHv 197
                 567999**************9432..22.2555555555555555555.9999999998777.88899999999999999999999***********54 PP

      AAA_22 105 seealeeLrsl 115
                  e+++ e+++ 
  EHT99250.1 198 DEAMMDEIKQV 208
                 49999888765 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.011       5     133 ..     108     236 ..     103     241 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
  Helicase_RecD   5 dRGRGKSaalGlalaaliaegksnilvtaps...kenvktlfeflakglealglkeeekkkkaekaelrvr...kqrieyiapdellklkeqadll 94 
                      G GK++ +G++ + l +++k+++lv++ +   ++++k+l +      +++g++  +++ +++ + +  +   + +++++    + ++      l
     EHT99250.1 108 LQGAGKTTSVGKLGKFLREKHKKKVLVVSADvyrPAAIKQLETL----AQQVGVDFCPSDLSQKPVDIVNNalrEAKLKFYDVLLVDTA----GRL 195
                    479***********************999861114444444444....45556666444333333333333333999999987766665....57* PP

  Helicase_RecD  95 vvDEAAaiplpllkkllekfkrvvlatTvhG..YEGtGrgf 133
                     vDEA + +++ +++ ++  +++++  ++ G   ++t ++f
     EHT99250.1 196 HVDEAMMDEIKQVHAAINPVETLFVVDAMTGqdAANTAKAF 236
                    *****************999998887777763355666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05     0.014       1      38 [.     102     145 ..     102     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg...avllssdtlrrrlf 38 
                 +vl+ Gl+G+GK+t + +l   l++ +   + ++s d++r +  
  EHT99250.1 102 VVLMAGLQGAGKTTSVGKLgkfLREKHkkkVLVVSADVYRPAAI 145
                 89***************997773333357799999999776433 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.4e-05     0.022       4      91 ..     102     211 ..     100     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-05
      AAA_24   4 kiliyGpsgiGKTtlakel........gpkplfidtekGlksldadkfpdieswedfldevvel...................aaeladyktlviDtid 75 
                  +l+ G +g+GKTt++ +l        ++k+l++  +       ++ ++   ++e++ ++v  +                   +a+l+ y++l +Dt++
  EHT99250.1 102 VVLMAGLQGAGKTTSVGKLgkflrekhKKKVLVVSADV----YRPAAIK---QLETLAQQVGVDfcpsdlsqkpvdivnnalrEAKLKFYDVLLVDTAG 193
                 68999**************7777777777777776665....3333333...33333333333355556888899999999*****************9 PP

      AAA_24  76 ele..elclaevirqnek 91 
                  l   e +++e+++ + +
  EHT99250.1 194 RLHvdEAMMDEIKQVHAA 211
                 773225666677666665 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.6e-05     0.033      12      93 ..     110     193 ..     101     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.6e-05
       VirC1  12 GaGkttalmglcsalasd.gkrvalfeadenrPltkwkenalrkgawddacev.fvadelplleaayeeaegeGfdyaladtrg 93 
                 GaGktt++  l   l  + +k+v +  ad  rP +  + ++l ++   d c    + + + ++++a +ea+++ +d+ l+dt g
  EHT99250.1 110 GAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSdLSQKPVDIVNNALREAKLKFYDVLLVDTAG 193
                 8*************987626789999*******9877777777777777786515677899*********************87 PP

>> Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.8   2.5e+03      28      37 ..      48      57 ..      48      67 .. 0.82
   2 ?   -3.0   0.0       9.2   8.3e+03      33      41 ..     267     275 ..     256     282 .. 0.68
   3 ?   12.4   0.1   0.00014      0.13      12      37 ..     316     340 ..     314     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.8
  Nse4-Nse3_bdg 28 vdeFvsklkt 37
                   v +F++++k 
     EHT99250.1 48 VRDFINRVKE 57
                   689****996 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.2
  Nse4-Nse3_bdg  33 sklktfMgg 41 
                     k ++fMg 
     EHT99250.1 267 GKPIKFMGM 275
                    566899997 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00014
  Nse4-Nse3_bdg  12 aaekarnlklggggfDvdeFvsklkt 37 
                    a + a++lk+g +gfD+++F++ lk+
     EHT99250.1 316 AEKLAKKLKTG-DGFDLNDFLEQLKQ 340
                    67889*****9.************97 PP

>> Peptidase_C23  Carlavirus endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.016        14      19      50 ..     306     337 ..     302     359 .. 0.80
   2 ?    5.6   0.0     0.019        17      34      55 ..     400     421 ..     375     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.016
  Peptidase_C23  19 dilAvlekvaseelveevseGrGlsiedvesv 50 
                    di  ++++  +e+l ++++ G G++++d    
     EHT99250.1 306 DIESKVDRAQAEKLAKKLKTGDGFDLNDFLEQ 337
                    7888999*******************996433 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
  Peptidase_C23  34 eevseGrGlsiedvesvleild 55 
                    + ++ G G++++dv+++l+ +d
     EHT99250.1 400 RRIATGSGMQVQDVNRLLKQFD 421
                    7899***************998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015      0.14      21      75 ..      97     147 ..      62     243 .. 0.65
   2 ?   -1.3   0.0       2.9   2.6e+03      91     124 ..     309     339 ..     270     420 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysalaqa 75 
                 ++ p +vl  G +G GK++ v +l + l+++   ++++++++  +          +++
  EHT99250.1  97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKhkkKVLVVSADVYRPA-------AIKQ 147
                 333589999************99999888885434555444444432.......2222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
      AAA_16  91 saeleawrekleealaavpelagaeasrllellk 124
                 s+  +a +ekl + l+     +g + +++le+lk
  EHT99250.1 309 SKVDRAQAEKLAKKLK---TGDGFDLNDFLEQLK 339
                 3333333333333333...111111233333333 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.16       2      49 ..     100     148 ..      99     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT.--EEEEEHHHHTTTTTTT- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekg.isvylLdGdnvRhgLnkdL 49 
                 ++vv+++Gl g+GK+t   +l k L+ek  ++v ++  d+ R    k+L
  EHT99250.1 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHkKKVLVVSADVYRPAAIKQL 148
                 689**********************988757888888888887666655 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00086      0.77       3      41 ..     102     141 ..     100     154 .. 0.86
   2 ?    1.7   0.5      0.16   1.4e+02     191     260 ..     364     432 ..     357     439 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00086
                 EEEEE--TTSSHHHHHHHHHHHHHH.TT--EEEE-THHHH CS
       KTI12   3 LvvltGlPssGKstrakeLakalee.ekrsvvviddeslg 41 
                  v++ Gl  +GK+t + +L k l+e +k++v v++ + ++
  EHT99250.1 102 VVLMAGLQGAGKTTSVGKLGKFLREkHKKKVLVVSADVYR 141
                 6999*******************99678889999988765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHH....HTT--HHH................HHHHHHHHHHHHHHHT.TSSS--H CS
       KTI12 191 flqeLdketseivkeileaqksavaidkltlpgsseslelpakkltlaeLsrlrrqFvklnkaklenvde 260
                 +  ++d ++   +++i++ ++++++ +   + gs+++   + + ++++ ++rl +qF  +++  ++++++
  EHT99250.1 364 VKSQMDDKVLVRMEAIINSMTRKEREKPEIIKGSRKRRIATGSGMQVQDVNRLLKQFDDMQR-MMKKMKK 432
                 55666666666677788866666666655566666554444457*************99999.4555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.7   3.3e+03      65      86 ..      30      51 ..      19      86 .. 0.63
   2 ?    9.2   0.4    0.0013       1.2      47      97 ..     177     233 ..     102     249 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.7
                HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1 65 glgkaflaleeadlillvvdas 86
                 l++   al ead++l vv+  
  EHT99250.1 30 TLREVRMALLEADVALPVVRDF 51
                5666666778899999888733 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
                 E........EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHH CS
    MMR_HSR1  47 e........ielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeel 97 
                 +        + lvDt+G ++ ++   ++ k+++a ++    l+vvda ++  ++  ++ 
  EHT99250.1 177 ReaklkfydVLLVDTAGRLHVDEAMMDEIKQVHAAINPVETLFVVDAMTG--QDAANTA 233
                 0333444449*******7763333335666666666667799***97733..2222333 PP

>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.45     4e+02      27      57 ..     316     346 ..     306     353 .. 0.75
   2 ?    7.7   1.6    0.0052       4.6      11      55 ..     385     429 ..     382     438 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.45
       Wbp11  27 qkareaklakkdpdeleeeiekLeelessgk 57 
                 +++  +kl++ d  +l + +e+L+++ ++g 
  EHT99250.1 316 AEKLAKKLKTGDGFDLNDFLEQLKQMRNMGG 346
                 3344569999999999999999999988775 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0052
       Wbp11  11 RKaqrkkelkKnKkerqkareaklakkdpdeleeeiekLeeless 55 
                 RK++ k e+ K+ ++r+ a  + ++ +d+++l +++++++++ ++
  EHT99250.1 385 RKEREKPEIIKGSRKRRIATGSGMQVQDVNRLLKQFDDMQRMMKK 429
                 9**************************************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 3571.97
//
Query:       EHT99251.1  [L=265]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-40  139.7  20.5    1.1e-40  139.7  20.5    1.4  1  Cytochrom_C_asm  Cytochrome C assembly protein


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7  20.5   6.1e-45   1.1e-40       4     212 ..      36     260 ..      33     262 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 6.1e-45
  Cytochrom_C_asm   4 leesllllawilsllgllleylarklnlsllaavaliaalillgfalf....................lllaelqesadlnpalqspilmiHvp 77 
                      l + ++l+ ++++l + +++    ++nlsll+ ++l+++li+ +++++                    l +a++ ++a++++++++p++miH++
       EHT99251.1  36 LSACVALVTHAVALQQRIFA-VDGGQNLSLLNIGSLVSLLICAIMTIVasrnrgwlllpivysfalinLAFATFVPNAFITHLETTPGIMIHIG 128
                      566789999999999*9**5.59999******************99999******************9************************** PP

  Cytochrom_C_asm  78 lallsYatliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvf 171
                      l+l++Yatlii+al++++l +i++ql k+kkl + + +++l +++r +++i+++G+vllt+ +++G +++++++    +  +k+++s+i+W+v+
       EHT99251.1 129 LSLFAYATLIIAALYALQLAWIDYQL-KNKKLAFTQDMPPLLTIERKMFHITQVGVVLLTLVLCTGLFYMHDLFSAENV--DKAVLSIIAWFVY 219
                      *************************9.99**************************************************..************* PP

  Cytochrom_C_asm 172 aallhsriekgwrgkkaailailgflllllayfgvrllgeg 212
                       +ll+++ ++gwrg++++++++ g++ll++ayfg+r+l++ 
       EHT99251.1 220 IVLLWGHYHEGWRGRRVVWFNCSGAVLLTMAYFGSRVLQHL 260
                      *******777***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1043  (0.0581739); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1994.30
//
Query:       EHT99252.1  [L=431]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-49  167.4   1.6    3.5e-49  166.9   1.6    1.2  1  DUF21      Cyclin M transmembrane N-terminal domain
    5.4e-20   71.2   0.1    1.5e-19   69.8   0.1    1.7  1  CorC_HlyC  Transporter associated domain
    9.6e-07   29.2   0.6    0.00034   21.0   0.0    2.8  2  CBS        CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   1.6   5.9e-53   3.5e-49       3     169 ..      13     184 ..      10     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 5.9e-53
       DUF21   3 ivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellaegalavviatvivtllilvfg 101
                 +++++l+sa+fsg+Et++++l+r +l+++a++g+++a+r++kllk+p+rl+s +lign+lvnil+sa++t + ++l+  g+++v+iat ++t+++lvf+
  EHT99252.1  13 LIIMVLVSAYFSGSETGMMTLNRYKLRHQAKNGHRAARRVEKLLKRPDRLISLVLIGNNLVNILASAIGTIVGMRLY--GDAGVAIATGVLTFVVLVFA 109
                 3556699**********************************************************************..69****************** PP

       DUF21 102 EilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.......esesepavseeelkklveeseee 169
                 E+lPk++a+ y+ek+a  ++ +l  l++++ Plvwll+ +++l++       e++ ++a+s+eel+++v es+ +
  EHT99252.1 110 EVLPKTVAALYPEKVAYPSSFLLGPLQYVMLPLVWLLNTITRLLMrlvgiraEGAISSALSKEELRTIVYESRTH 184
                 *********************************************************************999875 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.1   2.5e-23   1.5e-19       3      80 ..     344     419 ..     343     420 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2.5e-23
                 ECTTEEEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   3 ldegsylvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvekl 80 
                 +++gs l++Gs++++e++++++++lpe+++ T++G+lle+l++iP+++++v+v+  ++ + +l++++++Ik+vr++++
  EHT99252.1 344 QNDGSVLIEGSANIREINKAFNWQLPEQEARTINGMLLEALEEIPTVNTRVRVN--HYDVDILDVQDNMIKQVRITPQ 419
                 689**********************************************88888..*******************986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0037        22       2      49 ..     205     255 ..     204     257 .. 0.78
   2 !   21.0   0.0   5.7e-08   0.00034       8      56 ..     278     326 ..     268     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0037
                 HHHSBS..SCEEEETTSBHHHHHHHHHHHT.SSEEEEE..ETTTBEEEEEEHH CS
         CBS   2 gdimtr..dvvtvppdttleealelmrekg.vsrlPVV..dedgklvGivtlr 49 
                  dim +  ++v ++ +++ + +++++ ++  ++r+ V+  d+ + +vG++  r
  EHT99252.1 205 DDIMVPrnEIVGININDDWKSVIRQL-SHSpHGRI-VLfrDSLDDCVGMLRVR 255
                 5764444499999*************.5557****.97797777799998765 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 5.7e-08
                 SCEEEETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   8 dvvtvppdttleealelmrekg.vsrlPVVdedgklvGivtlrDllrall 56 
                 ++ ++p+ t+l   l ++ +++  ++l VVde+g + G+++ +D+l+ ++
  EHT99252.1 278 EIYYIPEGTPLNTQLVKFQRNKkKTGL-VVDEYGDIKGLISIEDILEEIV 326
                 668999****999999996444545**.******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3171.59
//
Query:       EHT99253.1  [L=171]
Description: S-ribosylhomocysteine lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-61  205.7   0.0    3.2e-61  205.5   0.0    1.0  1  LuxS             S-Ribosylhomocysteinase (LuxS)
  ------ inclusion threshold ------
       0.16   11.8   0.0        8.3    6.3   0.0    2.6  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda


Domain annotation for each model (and alignments):
>> LuxS  S-Ribosylhomocysteinase (LuxS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.5   0.0   3.5e-65   3.2e-61       2     151 ..       4     153 ..       3     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.5 bits;  conditional E-value: 3.5e-65
                 GGGGGB-TTT--SSEEEEEEEEEETTSEEEEEEEEE-S-TTTB---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEE-TTSSEEEEEEESS--HHHHHH CS
        LuxS   2 ieSFtvdHtklkapgvrvsrkdkvekgdvittfDlRlkkPneevletaalHtlEHllAtflRnhleklkdkiidigPmGCrTGfYlllageleseevve 100
                 ++SFtvdHt ++ap+vrv++++k+++gd+it+fDlR+++Pn ++l+++++HtlEHl+A+f+Rnhl++  ++i+di+PmGCrTGfY++l+g +++++v++
  EHT99253.1   4 LDSFTVDHTIMAAPAVRVAKTMKTPHGDTITVFDLRFCRPNIDILTERGIHTLEHLFAGFMRNHLNGDGVEIVDISPMGCRTGFYMSLIGAPDEQRVAQ 102
                 69************************************************************************************************* PP

                 HHHHHHHHHHC.TTGSCSTT-STTTSTTTTS--HHHHHHHHHHHHHH-HCC CS
        LuxS 101 llketledileveeeeevpganekeCGnykdhsLeeAkelakkvleevlen 151
                 ++k ++ed+l+v++++++p++ne++CG+yk hsL+eA+++a++vl++++ +
  EHT99253.1 103 AWKGAMEDVLKVKDQNQIPELNEYQCGSYKLHSLDEAQQIARNVLAQEIGV 153
                 *********************************************999865 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.013   1.2e+02      19      34 ..      50      67 ..      47      71 .. 0.76
   2 ?    6.3   0.0   0.00093       8.3      23      49 ..     134     159 ..     130     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.013
  DNA_pol_lambd_f 19 akGirtledlra..krak 34
                     ++Gi tle l a   r++
       EHT99253.1 50 ERGIHTLEHLFAgfMRNH 67
                     79*******998654455 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00093
  DNA_pol_lambd_f  23 rtledlra.krakLtreqqiGlkyyeDl 49 
                       +l+++++  r+ L  +q iG+ + +Dl
       EHT99253.1 134 HSLDEAQQiARNVL--AQEIGVNHNDDL 159
                      57777777433444..599********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1238.64
//
Query:       EHT99254.1  [L=520]
Description: gamma-glutamate-cysteine ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-170  567.0   0.0   1.6e-170  566.7   0.0    1.1  1  Glu_cys_ligase  Glutamate-cysteine ligase
  ------ inclusion threshold ------
      0.075   12.5   0.1       0.12   11.8   0.1    1.2  1  NA37            37-kD nucleoid-associated bacterial protein


Domain annotation for each model (and alignments):
>> Glu_cys_ligase  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.7   0.0  1.8e-174  1.6e-170       2     372 .]      10     381 ..       9     381 .. 0.98

  Alignments for each domain:
  == domain 1  score: 566.7 bits;  conditional E-value: 1.8e-174
                     HHHHHSGG..GGTT-EEEEEEEEEEE-TTSSB--S-S-GGG--TTT-SSEEE-SBTTEEEEE---BS-HHHHHHHHHHHHHHHHTSSTT-EE--S CS
  Glu_cys_ligase   2 kllkkekkkkllkkikrGiErEslRvteegklaqtphpkalGsalthksittDfsEallEfiTpveksveelleeLedlhrfvakkledellwpl 96 
                     ++l+++++  +lk+i rGiErE+lRv+++g+la+t hp++lGsal+h++ittDf+E+llEfiTpv++s++++l++L+d+hr+va++l+de++wp+
      EHT99254.1  10 SWLEAHPD--ALKGIGRGIERETLRVQPDGHLATTAHPASLGSALKHDWITTDFAETLLEFITPVDHSIDHMLAFLRDVHRHVADELGDERMWPF 102
                     56666666..9************************************************************************************ PP

                     SS-SS-STTGGS-B----SSHHHHHHHHHHHHHHHHH-SGGGG--EEEEEEE--HHHHHHCH-S--TTHHHHHHHHHHHHHHHHHHHHTTHHHHH CS
  Glu_cys_ligase  97 SmPcvlekeeeipiaqygssnagklktvYRegLklrYGkkmqviaGvHyNfSlseelwealkeeeekekskefiseaylalirnfrrlgwlllYL 191
                     SmPc++e+ ++i++aqyg+sn+g++kt+YR+gLk+rYG+ mq+i+G+HyNfSl+ ++w+a+++ ++ e+ ke+is++yl+lirn++r+gw+++YL
      EHT99254.1 103 SMPCLIEDADKITLAQYGTSNIGRMKTLYRQGLKNRYGALMQTISGIHYNFSLPLSFWQAWADVKDYESGKETISAGYLRLIRNYYRFGWVIPYL 197
                     ******************************************************************9999************************* PP

                     H--BSEEEGGG-----..S--EE-TTSEEE-TT-SBGGGSTTSS-SGBCTTTT--SS-HHHHHHHHHHHHTSB-HHHHCT-SE.ETTEE-SS-SB CS
  Glu_cys_ligase 192 fGaspavdksflkgrk..lelekldketlylpyatsLRlsdlGYtnkaqkklkisynsleeYveslkkaiktpseeyekigvk.kdgeykqlntn 283
                     fGaspa+++sfl+g++  l++++ dk+tl lpyatsLRlsdlGYtnk+q++l i++nsle Yv++lkkaiktpse++ k+g++  +g++ qlntn
      EHT99254.1 198 FGASPAICSSFLQGKEsaLPFKHDDKGTLWLPYATSLRLSDLGYTNKSQSALGITFNSLEGYVSALKKAIKTPSEDFVKMGTRdAEGNWLQLNTN 292
                     ***************6689***************************************************************9899********* PP

                     SSSSGGGSB-SEEEE----TT--HHHHHHHH---EEEEEEEE--TTSTTS--HHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHH CS
  Glu_cys_ligase 284 vLqienEfYssirpkrvtksgekpleaLerrGveYiEvRalDvnpfsplGieeeqlrfldlfllyclleespelseeeleeikknlekv 372
                     vLqienE+Y++irpkrvt+sge p++aL r G+eYiEvR++D+npfsp+G++e+q+rfldlfl++c+l+++pe+s++el++ ++n+++v
      EHT99254.1 293 VLQIENELYAPIRPKRVTRSGEAPSDALLRGGIEYIEVRSMDINPFSPVGVDENQVRFLDLFLIWCTLADAPEMSADELQCSRQNWNRV 381
                     **************************************************************************************987 PP

>> NA37  37-kD nucleoid-associated bacterial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.3e-05      0.12     168     262 ..     410     506 ..     391     514 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
        NA37 168 ffedfLgceegvdskkqtkkllkavedfakkeeldkaekqelrkrvveylkeqleegesvdleelaeelfkdnpee....kefvkee.eeyeleeefpv 261
                 +f d+  ++e++ds++ t ++ +++++ +++++ ++ ++ +   r+ ++ ke+   g  + l e  ++l  ++p e    ++f++++ ++   +++ +v
  EHT99254.1 410 LFADLRRVAEALDSNQGTTEYQQVCDELVASFDDPELTYSA---RILNAMKEHGVTGTGIMLAEQYRQLLVNEPLEvlkpEDFAQQAqASVAAQQQLEV 505
                 5666667899*******************************...*********************9999999999999999999998777777777766 PP

        NA37 262 d 262
                 +
  EHT99254.1 506 S 506
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3970.05
//
Query:       EHT99255.1  [L=142]
Description: hypothetical protein CKS_1253 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-08   33.2   5.9    8.3e-08   32.7   5.9    1.2  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   5.9   4.7e-12   8.3e-08       6     117 ..      28     133 ..      21     135 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 4.7e-12
  SNARE_assoc   6 llvaaGvlf..glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka.lerlverygflallllrllpivPrdlvnyvaGltrvsfkrFf 100
                  llva+ ++   +++  + v+slg +lG++++ +lgr l    l+r  + ++++ a l+rl       a+lll +lp+v  dl++++aG +r+ + + +
   EHT99255.1  28 LLVALLIAKsaSVYGLIGVASLGNTLGGLTNIILGRLLP---LKRQGRWHETAMAwLQRLG-----PAALLLSWLPVV-GDLLCVLAGWLRFAWLPTV 116
                  44333332244778899*******************999...6676666666665355544.....689999******.******************* PP

  SNARE_assoc 101 latfiGsipwalvyayl 117
                  l+ +iG+ ++ +v+a++
   EHT99255.1 117 LFLAIGKTLRYIVIATA 133
                  **********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1046.68
//
Query:       EHT99256.1  [L=190]
Description: fructose-1-P and 6-phosphogluconate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-27   96.5   0.0    2.2e-27   96.3   0.0    1.1  1  HAD_2            Haloacid dehalogenase-like hydrolase
    1.6e-18   67.8   0.8    2.3e-17   64.0   0.8    2.0  1  Hydrolase        haloacid dehalogenase-like hydrolase
    5.7e-06   26.3   0.1    5.8e-05   23.1   0.0    2.4  3  Hydrolase_like   HAD-hyrolase-like
    0.00034   21.1   0.4    0.00059   20.3   0.4    1.4  1  HAD              haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.23   11.0   0.1       0.47   10.0   0.1    1.4  1  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   6.2e-31   2.2e-27       1     176 [.      10     185 ..      10     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 6.2e-31
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee....kieellrkyneekkkkevkpydgvkelLeeLkeag 95 
                 +iFD+DgT+ldte+++ +a++++l +ygl +++e  +  + g ++  l + + e+++ ++    + +e    +++ + + +v+p++ + ++++   + +
  EHT99256.1  10 LIFDMDGTILDTEPTHRKAWRQVLTRYGL-TFDEARMMDFNGAPSWRLAQLIVETNNADHdpylLAAEKTAAVKAMLLE-NVQPLPLM-DVVKAY-HGR 104
                 69*************************99.***************8887777776665557776555555666666666.99999965.566665.9** PP

       HAD_2  96 yklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                   l++ T +++++++  l++lg+ ++F+ +v+++dve++KP+pe+++++   l+++++++++++D  ++++aak+ag+ v+
  EHT99256.1 105 RPLAVGTGSQHAMADALLNHLGVRDLFSAVVGADDVEHHKPEPETFLRCAALLGVEPARCVVFEDADFGVQAAKAAGMAVV 185
                 ******************************************************************************997 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.8   6.3e-21   2.3e-17       1     210 []       7     181 ..       7     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6.3e-21
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                 +++++fD+dGT++++ep ++++++++                         +++++ +++           g p w  a+         i + + ++++
  EHT99256.1   7 YDALIFDMDGTILDTEPTHRKAWRQV---------------------LTRYGLTFDEARMMD-------FNGAPSWRLAQ--------LIVETNNADHD 69 
                 589***********************.....................677777777777777.......89999999999........66666666666 PP

                 HHHHTTHHHHHHHHH..HTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEE CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftia..dplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeeva 194
                  +ll a+  a +++   ++ ++ p + ++v++ +  g  ++++ tg+++++a++++n+lG +d f+av+++d++++ kp+pe +++ +  L+++p++++
  EHT99256.1  70 PYLLAAEKTAAVKAMllENVQPLP-LMDVVKAYH--GRrPLAVGTGSQHAMADALLNHLGvRDLFSAVVGADDVEHHKPEPETFLRCAALLGVEPARCV 165
                 666644444444444223322333.448999988..6657*********************************************************** PP

                 EEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxx RF
   Hydrolase 195 mVGDgvnDaaalaaAg 210
                 +++D   +++a++aAg
  EHT99256.1 166 VFEDADFGVQAAKAAG 181
                 ***************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.32   1.2e+03      43      57 ..      29      43 ..      20      59 .. 0.74
   2 ?   -2.9   0.0       2.1   7.4e+03      44      55 ..     105     116 ..     102     128 .. 0.60
   3 !   23.1   0.0   1.6e-08   5.8e-05       4      48 ..     144     187 ..     142     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
                    -EEEEESSSSS-TTT CS
  Hydrolase_like 43 wksvLVltGvtrped 57
                    w+ vL++ G t +e+
      EHT99256.1 29 WRQVLTRYGLTFDEA 43
                    899999999865544 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
                     EEEEESSSSS-T CS
  Hydrolase_like  44 ksvLVltGvtrp 55 
                     + ++V tG  ++
      EHT99256.1 105 RPLAVGTGSQHA 116
                     556677776544 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 1.6e-08
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                     KPepe++ + ++ lg++p+++++  D  +  +++A++aG+  v V
      EHT99256.1 144 KPEPETFLRCAALLGVEPARCVVFEDA-DFGVQAAKAAGMAVVDV 187
                     ***************************.************99866 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   1.7e-07   0.00059       2     130 ..      11     137 ..      10     171 .. 0.58

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.7e-07
         HAD   2 lfDfDgTLldgdsle..lllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldp.galellaa 96 
                 +fD+DgT+ld+++ +  +++++l+r      + +  e+ ++++ + + +++ a+l    ++  a+++   laae  ++v ++ ++   +p  ++++++a
  EHT99256.1  11 IFDMDGTILDTEPTHrkAWRQVLTRY-----GLTFDEARMMDF-NGAPSWRLAQLIVETNN--ADHDpYLLAAEKTAAVKAMLLEN-VQPlPLMDVVKA 100
                 8**********888888777755555.....333333333333.33333322222222221..22221222222222223333333.456789999997 PP

         HAD  97 hraaGdrvvvvSgglrplvepllaelg....adevlat 130
                  + +  +++v +g+   ++ +ll++lg    + +v++ 
  EHT99256.1 101 YHGR-RPLAVGTGSQHAMADALLNHLGvrdlFSAVVGA 137
                 7633.499*******************55555555554 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00013      0.47      71      97 ..       5      31 ..       2      45 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
                     TSEEEEEE--BTTTEEHHHHHHHCHHH CS
  Acid_phosphat_B 71 dkkdavvfDiDeTvLsnspYqkyqglg 97
                     d+ da +fD D T+L++ p +++ +++
       EHT99256.1  5 DQYDALIFDMDGTILDTEPTHRKAWRQ 31
                     6789*************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1580.71
//
Query:       EHT99257.1  [L=61]
Description: post transcriptional regulatory RNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-27   94.7   1.5    2.6e-27   94.5   1.5    1.0  1  CsrA      Global regulator protein family
  ------ inclusion threshold ------
      0.023   15.0   0.6       0.12   12.7   0.4    1.8  2  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CsrA  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   1.5   2.9e-31   2.6e-27       1      52 [.       1      52 [.       1      53 [. 0.99

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 2.9e-31
                -EEEEEETT-EEEETTTEEEEEEEEETTEEEEEEE--TTS-EEEHHHHHHHT CS
        CsrA  1 MLvLtRkkgEsIvIgddIeitvlevegnqvrlgIeAPkevkIlReEiyeeiq 52
                ML+LtR++gE+++Igd++++tvl+v+gnqvr+g++APkev+++ReEiy++iq
  EHT99257.1  1 MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQ 52
                ***************************************************8 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00018       1.6      46      64 ..       8      26 ..       4      32 .. 0.83
   2 ?   12.7   0.4   1.4e-05      0.12       3      45 ..      13      52 ..      11      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
                HHHCEETTEEEEEEEEEEE CS
          S1 46 pdevlkvGdevkvkvlkvd 64
                 +e+l +Gdev v vl+v+
  EHT99257.1  8 VGETLMIGDEVTVTVLGVK 26
                679999***********97 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.4e-05
                TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESC CS
          S1  3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarved 45
                ++g++v+ +V  v    +++ + ++ e+ v+++e+ ++    +
  EHT99257.1 13 MIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQR---IQ 52
                789***********777777777************987...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 506.19
//
Query:       EHT99258.1  [L=875]
Description: alanyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-236  786.3   0.0   3.2e-236  785.1   0.0    1.5  2  tRNA-synt_2c  tRNA synthetases class II (A)
    2.5e-29  102.5   2.6    7.4e-29  100.9   2.6    1.9  1  DHHA1         DHHA1 domain
    1.4e-17   63.5   0.1    5.6e-17   61.6   0.1    2.1  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi
     0.0043   15.9   0.8     0.0076   15.1   0.8    1.3  1  DUF3573       Protein of unknown function (DUF3573)
  ------ inclusion threshold ------
      0.029   13.6   0.2      0.065   12.4   0.2    1.6  1  Phage_cap_E   Phage major capsid protein E
       0.95    8.5   3.1       0.43    9.7   0.4    1.7  2  FH2           Formin Homology 2 Domain
        1.1    9.7   9.7         12    6.4   0.0    3.2  3  LPP           Lipoprotein leucine-zipper
        4.8    6.0   5.7          2    7.2   1.4    2.0  2  Spc7          Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  785.1   0.0  1.4e-239  3.2e-236       1     552 []       7     556 ..       7     556 .. 0.99
   2 ?   -2.2   0.0      0.49   1.1e+03     255     282 ..     718     742 ..     702     747 .. 0.72

  Alignments for each domain:
  == domain 1  score: 785.1 bits;  conditional E-value: 1.4e-239
                   HHHHHHHHHHHCTT-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSSCGGSSSEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEESSSS CS
  tRNA-synt_2c   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgkeakpklkravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfsfgdY 97 
                   eir++FldfF++kgH+vv+sss+vp+ndptllf+nAgm+qfk++flg++ k++++ra++sQ+c+RagGkhnDlenVG+tarHhTfFeMlGnfsfgdY
    EHT99258.1   7 EIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQD-KRDYTRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY 102
                   8************************************************.*********************************************** PP

                   -HHHHHHHHHHHHH..TTTT--GGGEEEEEETTEHHHHHHHHHTTTTEGGGEEEE-HH.......HHEEESSSSEEEEEEEEEEEECETTSHHCHCC CS
  tRNA-synt_2c  98 fkeeaiefawellt..kelgldkerlyvtvfeeddeaveiweklvgvpeerilrfgek.......dnfwemgdtgpcgpcseiyydrgeeigkrkaa 185
                   fk+eai++awellt  +++ l+kerl+vtv+e+ddea++iw + +gvp+eri+r+g++       dnfw+mgdtgpcgpc+ei+yd+g++i++ +++
    EHT99258.1 103 FKKEAIAYAWELLTgdQWFRLPKERLWVTVYETDDEAFDIWANDIGVPRERIIRIGDNkgsayasDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPG 199
                   **************999***************************************999**********************************9999 PP

                   CCTTCTCCHEEEEEEEEEEEEEESTTSHEEEEEEEEEEEEEEHHHHHHHHTTHSSGGGSCCTHHHHHHHHHHHT--TCSTCCHHHHHHHHHHHHHHH CS
  tRNA-synt_2c 186 seveadddrvleiwnlvfmqfnreedgtlkpLpkksidtGmglerlvavLqevrsnydtdlfvpvieaieeisgatyedkdetdealrviaDHvral 282
                   s++e d+dr++eiwn+vfmqfnr++dgt+ pLpk+s+dtGmgler++avLq+v+sny+ dlf+++i+a++e++g    ++d  +++lrviaDH+r++
    EHT99258.1 200 SPEE-DGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLERITAVLQHVNSNYEIDLFQKLINAVAEVTG----ATDLSNKSLRVIADHIRSC 291
                   9999.*********************************************************************....78899************** PP

                   HHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC CS
  tRNA-synt_2c 283 afaladGvvpsnegrgYvlRrllRravrhakkLglkekflaklvavvvevlgdvypelkekeekveeiieeEeerFakTlerGlklleelikklkkk 379
                   af++adGv+psne+rgYvlRr++Rravrh+++Lg+ke+f++klva ++ev+g + +el++++++ve++++ Eee+FakTlerGl+ll+++++klk +
    EHT99258.1 292 AFLIADGVIPSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEELQRQQAQVENVLKSEEEQFAKTLERGLALLDDELAKLK-G 387
                   *********************************************************************************************88.8 PP

                   SEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSSXXXXXXXXTTSHCHHCCTSTTTXXXXXXTSXXXXXXSEEE CS
  tRNA-synt_2c 380 kelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekklikkdvealkelkkteeflgyeeleaeakvlallkdkefv 476
                   ++l+ge++f+Lydt+GfP dlt+++++e++lk+d+ gfekame+qr+r+++++  ++    d++++ + ++++ f gy++l+  a+v +l+  +e v
    EHT99258.1 388 DTLDGETVFRLYDTFGFPADLTADVCRERNLKIDEAGFEKAMEQQRQRAREASGFGA----DYSNVIRTDAASSFKGYDQLDLAATVKGLFVAGEAV 480
                   *************************************************99988877....************************************ PP

                   EEEEEEETTEEEESEEXXXXSSSSCSXXXEEEEESSEEEEESEEEEETTEEEEEXSS.XSXXXTTSEEEEEEXHHH CS
  tRNA-synt_2c 477 eeveegeevgvvLdrTpfYaesGGqigDeGliekegaefrvkdvqkakgvvlhkgkleegklkvgdkvkaevdeer 552
                   + v++g++++vvLd+TpfY+esGGq gD+G++++++ ef+v+d+qk+++ + h+gk+++g+l++gd+v+a+vde+r
    EHT99258.1 481 DTVSAGQDAVVVLDETPFYGESGGQVGDTGVLKGNNVEFQVQDTQKYGQAIGHIGKVSSGQLRIGDRVEAVVDEAR 556
                   *************************************************************************975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.49
                   HHHHT--TCSTCCHHHHHHHHHHHHHHH CS
  tRNA-synt_2c 255 eeisgatyedkdetdealrviaDHvral 282
                   +++++    ++++ + ++r + DHvr+l
    EHT99258.1 718 AQLVK---ANSSNLNDKVRGLVDHVRSL 742
                   33333...466778999*********98 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   2.6   3.3e-32   7.4e-29       4     138 .]     735     871 ..     732     871 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 3.3e-32
                 HCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEECTEEEEEEEESSH...SS-HHHH CS
       DHHA1   4 lneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegdkvkvsarskkd...gvdagel 99 
                 l +  + lekel++l+++ a+++ ++l ++a +vkg k+lv+e+  ++d+++l++++d+lk++l++++iv++++ eg kv+++a+++kd   +v+agel
  EHT99258.1 735 LVDHVRSLEKELQQLRDQQAAQESAQLGNNAIDVKGAKLLVTEL-SNTDPKMLRTMVDDLKNQLGSAIIVLATVAEG-KVSLIAGVTKDltdRVKAGEL 831
                 55667899************************************.********************************.********************* PP

                 HHHHHHHTTCCEEEE.TCEEEEEEEHCHHHHHHHHHHHHH CS
       DHHA1 100 akeaaaklgggGGGH.dlAaGagipaekleealealeeai 138
                 + e+a+k+gg+GGG+ d+A+++g +a  l+ al+++e ++
  EHT99258.1 832 IAELAPKVGGKGGGRpDMAQAGGSDATALKGALADVEGWV 871
                 ************************************9986 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.1   2.5e-20   5.6e-17       1      44 []     653     696 ..     653     696 .. 0.99

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 2.5e-20
                 EEEEEETT.EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGdisvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vrv ++Gd+svelCgGtH  +Tg+Ig+f+i+ e+++a+g+rRI+
  EHT99258.1 653 VRVLTMGDFSVELCGGTHAARTGDIGLFRIQAESGSAAGIRRIE 696
                 9******************************************7 PP

>> DUF3573  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.8   3.4e-06    0.0076      32     112 ..     722     795 ..     698     819 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-06
     DUF3573  32 eqtsksnlidkelilklqkqikelqaeinhlketknsnesaqfttysskvedsklprslldnkeskdlsqvqktsvdiltn 112
                 + +++snl+d   +  l + ++ l+ e+++l++++ + esaq+   + +v+++kl  + l+n + k l ++    vd l+n
  EHT99258.1 722 K-ANSSNLND--KVRGLVDHVRSLEKELQQLRDQQAAQESAQLGNNAIDVKGAKLLVTELSNTDPKMLRTM----VDDLKN 795
                 2.23355555..588999************************************************99875....333333 PP

>> Phage_cap_E  Phage major capsid protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   2.9e-05     0.065      89     154 ..     343     411 ..     303     442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
  Phage_cap_E  89 rafgespaervqeevarkladlrdkidrteEwmraqaLkggklda......dGetlydlfvdFgvtakhkie 154
                   a+ge +++r q++v + l+  +++++ t+E+    aL++  l+       dGet++ l++ Fg++a+++ +
   EHT99258.1 343 GAAGE-ELQRQQAQVENVLKSEEEQFAKTLERGL--ALLDDELAKlkgdtlDGETVFRLYDTFGFPADLTAD 411
                  47888.9************************654..566555555677889*****************9764 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       2.1   4.6e+03     287     318 ..     348     373 ..     339     389 .. 0.51
   2 ?    9.7   0.4   0.00019      0.43     256     306 ..     703     753 ..     682     765 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHCCTTSSTT-THHHHHHH CS
         FH2 287 klekglkklekelessekkeepsdkflevlke 318
                 +l+++ +++e  l+s+e+      +f + l++
  EHT99258.1 348 ELQRQQAQVENVLKSEEE------QFAKTLER 373
                 444444444444444444......44444444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00019
                 TSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTS CS
         FH2 256 klpevldfsseLknvkkaakvnleslekevkklekglkklekelessekke 306
                 +l++v   ss+L+++ ++ k n  +l ++v+ l + ++ lekel++ + ++
  EHT99258.1 703 ALAQVYAQSSQLQDIAQLVKANSSNLNDKVRGLVDHVRSLEKELQQLRDQQ 753
                 678889999************************************998833 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       4.2   9.5e+03      11      27 ..     348     364 ..     347     370 .. 0.72
   2 ?    6.4   0.0    0.0052        12      17      47 ..     535     565 ..     532     568 .. 0.84
   3 ?    5.7   3.4    0.0087        20       3      45 ..     726     767 ..     724     768 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.2
         LPP  11 qLkskvdqlssdvnsak 27 
                 +L+++++q+++ ++s +
  EHT99258.1 348 ELQRQQAQVENVLKSEE 364
                 78999999988766655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0052
         LPP  17 dqlssdvnsakaaaqaakeEAaRANqRlDNi 47 
                  ++ss +  + + ++a+ +EA RA  Rl+  
  EHT99258.1 535 GKVSSGQLRIGDRVEAVVDEARRARIRLNHS 565
                 6778888889999***********9999865 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0087
         LPP   3 deLssqVsqLkskvdqlssdvnsakaaaqaakeEAaRANqRlD 45 
                 ++L++ V  L + v +l+++++++++  qaa+e A+  N+ +D
  EHT99258.1 726 SNLNDKVRGLVDHVRSLEKELQQLRD-QQAAQESAQLGNNAID 767
                 579999*****************986.5999**9998888777 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.12   2.6e+02     151     189 ..     342     381 ..     329     394 .. 0.55
   2 ?    7.2   1.4   0.00091         2     146     196 ..     709     763 ..     702     817 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
        Spc7 151 leedkelLekqeeeldellpeleeeka.eleeeleklqea 189
                 + +  e+L++q+++++++l++ ee++a +le+ l+ l ++
  EHT99258.1 342 MGAAGEELQRQQAQVENVLKSEEEQFAkTLERGLALLDDE 381
                 4444455556666665555555555543444444444443 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00091
        Spc7 146 enlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles....i 196
                  + ++l++ ++l++++ ++l++ +  l+ +  +le+el++l+++++  es     
  EHT99258.1 709 AQSSQLQDIAQLVKANSSNLNDKVRGLVDHVRSLEKELQQLRDQQAAQESaqlgN 763
                 5567777778888888899999999999999999999999988665544423331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.22s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 6588.50
//
Query:       EHT99259.1  [L=170]
Description: RecX family regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-32  110.0   0.8      4e-31  108.0   0.1    1.9  2  RecX      RecX family


Domain annotation for each model (and alignments):
>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.04   7.2e+02      95     117 ..      16      38 ..       3      44 .. 0.62
   2 !  108.0   0.1   2.2e-35     4e-31       7     117 ..      56     166 ..      47     170 .] 0.94

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.04
                 HHHHHHHHHHTT--HHHHHHHHH CS
        RecX  95 kqklvrfLarrGFssevirevlk 117
                   +++r L +r +s e+ ++ l+
  EHT99259.1  16 LDRAMRLLGQRDHSREELKQKLQ 38 
                 45556666666666665555444 PP

  == domain 2  score: 108.0 bits;  conditional E-value: 2.2e-35
                 -HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH----HHHHHHHHHTTT--HHHHHHHHT..TS-HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHH CS
        RecX   7 peevieavierlkeeglldDerfAesfvrsrlrsrgyGprrikqeLkqkGiseelieqale..eldeeeqarelaekklkklkkeedekekqklvrfLa 103
                 ++e +e+vi+++ e+g+l+Derf e+f++sr+r +g Gp+ri+ eL qkGis++ i+ a+e  e+d+ + a+elaekk++++  +++ kek+k++r+L 
  EHT99259.1  56 TPELLERVINWCSENGWLNDERFTERFIQSRSR-KGFGPQRIRLELWQKGISRDAIDLAMEetEIDWSACAAELAEKKFGHPL-PTEWKEKAKVQRYLH 152
                 67889***************************8.***************************999******************5.889************ PP

                 HTT--HHHHHHHHH CS
        RecX 104 rrGFssevirevlk 117
                  +GF se i++v++
  EHT99259.1 153 AKGFLSEYIQQVFR 166
                 ************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1269.64
//
Query:       EHT99260.1  [L=356]
Description: DNA strand exchange and recombination protein with protease and nuclease activity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.4e-142  471.1   3.4   1.1e-141  470.8   3.4    1.1  1  RecA      recA bacterial DNA recombination protein
    9.6e-13   48.0   0.7    2.4e-12   46.7   0.7    1.6  1  Rad51     Rad51
    1.4e-09   37.6   0.3    2.6e-08   33.5   0.3    2.5  1  ATPase    KaiC
    1.9e-05   24.7   0.0    5.6e-05   23.2   0.0    1.9  1  ATPase_2  ATPase domain predominantly from Archaea
    4.5e-05   23.3   0.0    6.8e-05   22.7   0.0    1.4  1  AAA_24    AAA domain
    0.00043   20.7   0.0    0.00076   19.9   0.0    1.3  1  AAA_16    AAA ATPase domain
    0.00055   19.6   1.0       0.03   13.9   1.0    2.4  1  AAA_25    AAA domain
     0.0069   16.5   0.0      0.011   15.8   0.0    1.5  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.012   14.4   0.0       0.02   13.7   0.0    1.2  1  AAA_35    AAA-like domain
      0.015   14.5   0.5      0.023   13.9   0.5    1.2  1  PAXNEB    PAXNEB protein
      0.017   14.7   0.0       0.03   13.9   0.0    1.4  1  CobU      Cobinamide kinase / cobinamide phosphate guanyltran
      0.022   15.2   0.1      0.048   14.1   0.1    1.6  1  AAA       ATPase family associated with various cellular acti
      0.024   14.6   0.0       0.11   12.4   0.0    2.0  2  MobB      Molybdopterin guanine dinucleotide synthesis protei
      0.038   14.0   0.0       0.11   12.5   0.0    1.9  2  AAA_14    AAA domain
      0.046   13.6   0.0      0.079   12.8   0.0    1.4  1  TK        Thymidine kinase
      0.052   13.8   0.0       0.11   12.7   0.0    1.6  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  470.8   3.4    1e-144  1.1e-141       1     263 []       9     270 ..       9     270 .. 0.99

  Alignments for each domain:
  == domain 1  score: 470.8 bits;  conditional E-value: 1e-144
                 HHHHHHHHHHHHHH-TTSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HHHHH CS
        RecA   1 kaleaalkqiekkfGkgsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyak 99 
                 kal+aal qiek+fGkgsim+lg+++ +++vetis+Gsl+ldialG GGlp+Gri+eiyGpe+sGkttl+l++ia aq+kg+++afidaehaldp+yak
  EHT99260.1   9 KALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAK 106
                 799********************999.7*********************************************************************** PP

                 HTT--GGG-EEE--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---------- CS
        RecA 100 klGvdidellvsqpdtGeqaleiadalvrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGvmfg 198
                 klGvdid+ll sqpdtGeqalei+dal rsga+d+i+vdsvaal+pkaeieGe+gds++gl ar+msqa+rkl+g++++snt++ifinqir+kiGvmfg
  EHT99260.1 107 KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205
                 *************************************************************************************************** PP

                 -------HHHHHHH-SEEEEEEEES---------EEEEEEEEEEESSS----EEEEEEETTTEE- CS
        RecA 199 npetttGGralkfyasvrldvrrieeikekeevignktkvkvvknkvappfkeaeldilygeGis 263
                 npetttGG+alkfyasvrld+rri++ike+++v+g++t+vkvvknk+a+pfk+ae++i+ygeGi+
  EHT99260.1 206 NPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMYGEGIN 270
                 ***************************************************************96 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.7   2.2e-15   2.4e-12      14     248 ..      36     264 ..      22     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2.2e-15
                 HSS-EE--S-HHHHHHH.TSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE- CS
       Rad51  14 sellqlttGskklDelL.gGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRa 111
                  ++ +++tGs +lD  L  GG++ g i ei+G   sGkt l+ ++  ++q         + +++id+e ++ p      a++ ++d +    n  +   
  EHT99260.1  36 MDVETISTGSLSLDIALgAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRK------GKTCAFIDAEHALDPV----YAKKLGVDID----NLLCSQP 120
                 45778*********99956********************9988888777754......689************7....5888899965....5556666 PP

                 -STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGG.CH-------THHHHHHHHHHHH..HHHHHH...HHH--EEEEEEE-------.----------- CS
       Rad51 112 ytiehqeellqqaaallaedkfallivDsvtaly.RtdfsgrgelakRqqklgkllr..tLrkla...defevavvitnqvvaqvdgqaalfsadpkkP 204
                  t e+  e+ +++a    +  + ++ivDsv+al  +++    ge+ +  + l+  ++  ++rkla   ++ +  ++  nq+  +++     + ++p+  
  EHT99260.1 121 DTGEQALEICDALA---RSGAVDVIIVDSVAALTpKAEI--EGEIGDSHMGLAARMMsqAMRKLAgnlKQSNTLLIFINQIRMKIGV----MFGNPETT 210
                 67777777766665...567899********98625554..5677777777765444124677773336778889999***999988....558999** PP

                 -HHHHHHHH-SEEEEEEE-ST..........TEEEEEEES-SSS-S-EEEEEEE CS
       Rad51 205 igGlvlahasttRlalrkgkg..........eeRivkvvdsPnlpeleavfaig 248
                  gG+ l   +++Rl +r+             e+R+  v +    p ++a f+i 
  EHT99260.1 211 TGGNALKFYASVRLDIRRIGAikegdnvvgsETRVKVVKNKIAAPFKQAEFQIM 264
                 ***************997543444568888777777777777778888888775 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.3   2.3e-11   2.6e-08       2     178 ..      42     218 ..      41     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.3e-11
      ATPase   2 ktgIeglDeil.kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdlekleeegklaiidasesaeesaeek 99 
                 +tg   lD  l  gG+p+gr+v i+G   +GKt++ lq +    +++g+ + f+  e     ++  ak+lG+d+++l  ++  +  +a e  +      
  EHT99260.1  42 STGSLSLDIALgAGGLPMGRIVEIYGPEASGKTTLTLQVIAAA-QRKGKTCAFIDAEHALDPVY--AKKLGVDIDNLLCSQPDTGEQALEICD------ 131
                 6777789999989*************************77766.666*********99999886..79*******998873333333333332...... PP

      ATPase 100 dkedleelieelaeaikeikakrvviDsitglayeekeavaReilrqlvrvlkklgvTailvsekss........seeaaggygvee 178
                   +   ++   + + ++++  k+ +   i+  +    + ++ + +r+l+  lk+ ++  i+++++++         e+++gg++++ 
  EHT99260.1 132 ALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMkigvmfgnPETTTGGNALKF 218
                 333444444445555555555555555555444444788888999999999999999999999998877777765455555555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     5e-08   5.6e-05      21      62 ..      61     102 ..      58     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5e-08
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesi 62 
                 +i+ iYGpe sGKt+L  ++i   + k+k   +++a +  + 
  EHT99260.1  61 RIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 102
                 5788*****************************998665544 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   6.1e-08   6.8e-05       5      78 ..      63     151 ..      59     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 6.1e-08
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfp.die........swedfldevvelaaeladyktlviDtidele 78 
                 + iyGp+ +GKTtl ++        g++ +fid e+ l+ ++a+k+  di         + e+ l+ +++la+  a  +++++D++  l 
  EHT99260.1  63 VEIYGPEASGKTTLTLQViaaaqrkGKTCAFIDAEHALDPVYAKKLGvDIDnllcsqpdTGEQALEICDALARSGA-VDVIIVDSVAALT 151
                 669***********************************9999999651455999*888888889999999999998.9*******98886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.8e-07   0.00076      22     141 ..      58     193 ..      47     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.8e-07
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdg..giflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala........... 106
                 + +++v ++G+ ++GK++l  ++  a++++g  + f+ ++          ++ +a+ l   ++ + l++++++   ++ + ++++ala           
  EHT99260.1  58 PMGRIVEIYGPEASGKTTLTLQVIAAAQRKGktCAFIDAEHAL-------DPvYAKKL-GVDIDNLLCSQPDT---GEQALEICDALArsgavdviivd 145
                 3448999*************99999999995224444444444.......46699999.76999999999555...45555566667778899999999 PP

      AAA_16 107 avpelagaea..............srllellkrllallsrderplvlvl 141
                 +v++l+++++              + + +++++l+  l++ + +l++++
  EHT99260.1 146 SVAALTPKAEiegeigdshmglaaRMMSQAMRKLAGNLKQ-SNTLLIFI 193
                 5555555555555566888888888889999999999999.66699988 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.0   2.6e-05      0.03      28      59 ..      55      87 ..      51     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlalava.t 59
                g lp+g ++ ++G++++GKttl+l++ +a   +
  EHT99260.1 55 GGLPMGRIVEIYGPEASGKTTLTLQVIAAAQrK 87
                55799********************99887644 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     1e-05     0.011      10      55 ..      71     202 ..      69     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
                 SSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..................................................... RF
        CbiA  10 vGKTtlaanLaralarrglrVllvDaDpqannlai.leglendiep..................................................... 54 
                 +GKTtl++  ++a +r+g+  + +Da     ++ + +++l  di++                                                     
  EHT99260.1  71 SGKTTLTLQVIAAAQRKGKTCAFIDAEHA--LDPVyAKKLGVDIDNllcsqpdtgeqaleicdalarsgavdviivdsvaaltpkaeiegeigdshmgl 167
                 7************************8777..44445999999999999999999999999999999999998888888888888888888888888888 PP

                 ..................................C CS
                 ..................................x RF
        CbiA  55 ..................................d 55 
                                                    
  EHT99260.1 168 aarmmsqamrklagnlkqsntllifinqirmkigV 202
                 66655555555555444444444444444444440 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05      0.02      31      70 ..      60      99 ..      57     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
      AAA_35 31 GalirikapkkmGKtSLlarilakakqqgyktvsldlqla 70
                G ++ i +p+  GKt L  +++a a+++g+  + +d ++a
  EHT99260.1 60 GRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHA 99
                899*****************************99998876 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5     2e-05     0.023      18      42 ..      40      65 ..      37      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
      PAXNEB 18 ltStGtpsLDklLgG.GLplGsilli 42
                ++StG+ sLD  Lg  GLp+G i+ i
  EHT99260.1 40 TISTGSLSLDIALGAgGLPMGRIVEI 65
                89***********978******9866 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.7e-05      0.03       3     124 ..      65     194 ..      63     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
        CobU   3 vtGgarSGKSefAekla...eeskekvvYiATaealDeemaeRiarHrerR.paeWetveepldlaealkeeekkevvLvDcltlwltnllleeeaek. 96 
                 + G+  SGK ++  +++   +++++++ +i + +alD  +a+++    ++   ++ +t e+ l++ +al+++ + +v++vD+++ ++ ++  e e  + 
  EHT99260.1  65 IYGPEASGKTTLTLQVIaaaQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLlCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDs 163
                 789************997666677999******************99999878999*************999999***********9988887665547 PP

        CobU  97 ....veekleeeveellealkelkatvvlVsn 124
                     + + +++++++l+  lk++++ ++++ n
  EHT99260.1 164 hmglAARMMSQAMRKLAGNLKQSNTLLIFI-N 194
                 899888899999999999999999888876.3 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.3e-05     0.048       3     106 ..      65     191 ..      63     200 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-05
                 EESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH......TT CS
         AAA   3 lyGppGtGKTllakavakel...gvefleisgsellsk................yvgesekkirelfkeakekakpsilfiDEidalaksr......sg 76 
                 +yGp   GKT+l  +v+  +   g ++  i++   l+                     +e+ ++ + + a++ a   ++++D + al+++        +
  EHT99260.1  65 IYGPEASGKTTLTLQVIAAAqrkGKTCAFIDAEHALDPvyakklgvdidnllcsQPDTGEQALEICDALARSGA-VDVIIVDSVAALTPKAeiegeiGD 162
                 79**************9998333244555555555544566666666666666444444444444444477777.8**************998655533 PP

                 CCCHHHHHHHHHHHHHHHHTTTSSSTEEEE CS
         AAA  77 seseeeervvnqLlteldgvkkkeskvivi 106
                 s+ + + r+++q +++l g  k +s++++i
  EHT99260.1 163 SHMGLAARMMSQAMRKLAGNLK-QSNTLLI 191
                 3333344444444444444333.2334444 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.8e-05      0.11       1      37 [.      62      98 ..      62     111 .. 0.86
   2 ?   -0.9   0.0       1.2   1.4e+03      74      97 ..     122     145 ..     104     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
        MobB  1 vlgivgksgsGKTtLleklipelkarglrvgtiKhah 37
                ++ i g + sGKTtL  ++i++ +++g + + i  +h
  EHT99260.1 62 IVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEH 98
                68899**********************9999996544 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
        MobB  74 leeaelsleellarlsevDlvlvE 97 
                 + e+ l++ + lar  +vD+++v 
  EHT99260.1 122 TGEQALEICDALARSGAVDVIIVD 145
                 456677888888888889999986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         5   5.6e+03      91     105 ..      36      50 ..      27      55 .. 0.78
   2 ?   12.5   0.0    0.0001      0.11       3      47 ..      61     105 ..      59     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5
      AAA_14  91 knldvivtGSnskll 105
                  +++ i tGS+s+++
  EHT99260.1  36 MDVETISTGSLSLDI 50 
                 5678899***99875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0001
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla 47 
                 +i+ i G+  +GKTtl  q+i     k + + +i+ ++  d  +a
  EHT99260.1  61 RIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYA 105
                 7899****************9988878888999998887774444 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     7e-05     0.079       3      87 ..      62     148 ..      60     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
          TK   3 ielilgpmfaGKsteLlrrvkryqlaekkvvvik..aakdnRyseg.kvvthdgisleakksktssleeikee.leeedvdvvlvDEaq 87 
                 i  i+gp  +GK+t  l+ +  +q++ k + +i   +a d  y ++  v   + ++ ++     +++ ei ++ +++ +vdv++vD + 
  EHT99260.1  62 IVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDaeHALDPVYAKKlGVDIDNLLCSQPD--TGEQALEICDAlARSGAVDVIIVDSVA 148
                 6679****************************9722567899987644444444444444..444444444440445569999999765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001      0.11       6     105 ..      61     153 ..      59     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 +i+ ++G+  +GKTtl  ++   +++       +++++f+++ +  ++   +++l  ++++ l +++++ e+ le +   +r+ av  ++i+D +  l+
  EHT99260.1  61 RIVEIYGPEASGKTTLTLQVIAAAQRK------GKTCAFIDAEHALDPVY-AKKLGVDIDNLLCSQPDTGEQALEICDALARSGAV-DVIIVDSVAALT 151
                 57789******************9865......89999999999885543.57777777777777788888888888888888888.******999995 PP

      AAA_22 105 .s 105
                  +
  EHT99260.1 152 pK 153
                 42 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 2790.39
//
Query:       EHT99261.1  [L=164]
Description: competence-damaged protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-60  203.6   1.1    1.4e-60  203.4   1.1    1.0  1  CinA      Competence-damaged protein


Domain annotation for each model (and alignments):
>> CinA  Competence-damaged protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.4   1.1   7.6e-65   1.4e-60       2     153 ..       7     159 ..       6     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 203.4 bits;  conditional E-value: 7.6e-65
        CinA   2 eslaeevvkllkkkgltlatAEScTGGllaaaltsvpGaSavfeggvvtYsneaKeelLgvseetleehgavSeevaeemaegarerlgadiavavtGi 100
                 ++l+++++++lk++++t+++AEScTGG +a+ +t+++G+Sa+fe+g+vtYsneaK+el+gvs++ l++ gavSe+v++ema gar++++ad+a++v+Gi
  EHT99261.1   7 QTLSAQIGEALKQRNATVTCAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQELVGVSAASLAQSGAVSEAVVREMAVGARQQARADYAISVSGI 105
                 68999********************************************************************************************** PP

        CinA 101 AGpsggteekpvGtvyialagkgg.veveklefegdreeireaavkaALellre 153
                 AGp+gg+e+kpvGtv++++ag+++ v + +++f+gdr+++r+++v+ AL+ l +
  EHT99261.1 106 AGPEGGSEDKPVGTVWFGFAGPDDiVMAFRQQFDGDRDAVRRQSVAWALQTLAS 159
                 ************************99999*********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1374.39
//
Query:       EHT99262.1  [L=111]
Description: hypothetical protein CKS_1266 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-34  116.3   3.5    5.1e-34  116.0   3.5    1.1  1  PhnA            PhnA domain
    8.8e-09   35.2   3.4    1.4e-08   34.5   3.4    1.4  1  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
     0.0026   17.2   0.7     0.0043   16.5   0.1    1.8  2  TF_Zn_Ribbon    TFIIB zinc-binding
     0.0062   16.4   2.6      0.088   12.8   2.6    2.3  1  zinc_ribbon_4   zinc-ribbon domain
  ------ inclusion threshold ------
      0.026   14.5   0.9      0.039   13.9   0.9    1.3  1  zinc-ribbons_6  zinc-ribbons
      0.036   14.0   0.5      0.059   13.3   0.5    1.3  1  zf-TFIIIC       Putative zinc-finger of transcription factor 
      0.038   14.1   1.0      0.064   13.4   1.0    1.4  1  zf-Mss51        Zinc-finger of mitochondrial splicing suppres
      0.047   13.4   1.4        0.3   10.8   0.1    2.3  2  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
      0.054   13.5   0.6      0.087   12.9   0.6    1.4  1  zf-RING_UBOX    RING-type zinc-finger
       0.06   13.4   0.5       0.06   13.4   0.5    1.6  2  HypA            Hydrogenase/urease nickel incorporation, meta
      0.065   13.8   0.3      0.075   13.6   0.3    1.4  1  RPA_interact_C  Replication protein A interacting C-terminal
      0.093   12.9   0.6       0.12   12.5   0.5    1.5  1  DUF2318         Predicted membrane protein (DUF2318)
        0.1   13.0   1.2        6.2    7.3   0.1    2.2  2  DUF983          Protein of unknown function (DUF983)
       0.12   12.1   0.4       0.29   10.9   0.4    1.6  1  DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
       0.14   12.3   2.9       0.39   10.8   0.2    2.2  2  UPF0547         Uncharacterised protein family UPF0547
       0.16   11.9   0.3         18    5.3   0.0    2.4  2  zf-C2H2_3       zinc-finger of acetyl-transferase ESCO
        0.3   10.5   0.1        0.3   10.5   0.1    2.6  3  zf-ribbon_3     zinc-ribbon domain
       0.31   10.8   4.0        4.8    7.0   4.3    2.2  2  YacG            DNA gyrase inhibitor YacG
       0.73   10.0   5.0         18    5.6   4.7    2.3  2  Zn-ribbon_8     Zinc ribbon domain


Domain annotation for each model (and alignments):
>> PhnA  PhnA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   3.5   5.4e-37   5.1e-34       1      69 []      44     111 .]      44     111 .] 0.98

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 5.4e-37
                 -B-SS--B--TTEEEEESS-EEETTTTEEE-TT-EEEEEEE--SS.E.EEEE-SS-EEEEEETTSEEE- CS
        PhnA   1 vkDsnGnvLadGDsVtvikdLkVkGssstiKrGtkvknirLvddgdhdidckvdgfgamvLksefvkKa 69 
                 v+D+nGn+LadGDsVtv+kdLkVkGsss++K Gt vk+irLv +gdh+idck+dgfg m+LksefvkK+
  EHT99262.1  44 VRDANGNILADGDSVTVVKDLKVKGSSSVLKIGTRVKSIRLV-EGDHNIDCKIDGFGPMKLKSEFVKKN 111
                 79****************************************.888*********************95 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   3.4   1.5e-11   1.4e-08       1      29 [.       2      30 ..       2      31 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.5e-11
  PhnA_Zn_Ribbon  1 tlpkCplCaSeytYedgallvCpeCahEw 29
                    +lp+Cp C+++yt +d ++l Cp C+h w
      EHT99262.1  2 SLPACPVCQADYTWQDAENLNCPSCGHIW 30
                    69*************************77 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.5e-06    0.0043       3      30 ..       6      31 ..       4      42 .. 0.88
   2 ?   -3.1   0.0       6.2   5.9e+03      27      35 ..      84      92 ..      84      95 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.5e-06
                  ETTTTCEECHEETSTTCEEESSSSBEEE CS
  TF_Zn_Ribbon  3 CPnCgstnlveDpergelvCtdCGlVle 30
                  CP+C  +++  D+e  +l C++CG ++ 
    EHT99262.1  6 CPVCQADYTWQDAE--NLNCPSCGHIWT 31
                  ********999988..999*****9875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
                  BEEEECCCC CS
  TF_Zn_Ribbon 27 lVlednsid 35
                  lV  d+ id
    EHT99262.1 84 LVEGDHNID 92
                  577788887 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   2.6   9.3e-05     0.088       5      36 .]       6      31 ..       5      31 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.3e-05
  zinc_ribbon_4  5 CpsCkakyeiddeklpakgvkvrCskCghvFr 36
                   Cp C+a y+ +d      + ++ C+ Cgh+++
     EHT99262.1  6 CPVCQADYTWQD------AENLNCPSCGHIWT 31
                   999999999999......478**********7 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.9   4.2e-05     0.039       2      29 ..       5      33 ..       4      46 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.2e-05
                    --SSS-S--EE-S.SEEE-TTT--EEEEE CS
  zinc-ribbons_6  2 kCpeCqqelekrg.eqyhCeaCqedlkke 29
                     Cp Cq+  ++++ e+++C +C +  ++ 
      EHT99262.1  5 ACPVCQADYTWQDaENLNCPSCGHIWTQA 33
                    5*********665499******9866554 PP

>> zf-TFIIIC  Putative zinc-finger of transcription factor IIIC complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   6.2e-05     0.059      13      38 ..       5      31 ..       3      34 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-05
   zf-TFIIIC 13 sCdicdagipleslteaqcke.GHvfs 38
                 C++c+a+  ++++++ +c + GH++ 
  EHT99262.1  5 ACPVCQADYTWQDAENLNCPScGHIWT 31
                6******************866****6 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0   6.8e-05     0.064       2      24 ..       6      28 ..       5      42 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-05
    zf-Mss51  2 CPvpkhkqtapkhvdfeCpdCGi 24
                CPv++++ t +   +++Cp CG 
  EHT99262.1  6 CPVCQADYTWQDAENLNCPSCGH 28
                **********************5 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00032       0.3       5      17 ..       4      17 ..       1      20 [. 0.82
   2 ?    1.4   0.2      0.27   2.6e+02      24      31 ..      23      30 ..      21      35 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
     zf-RRN7  5 ppCgvCgc.rsftl 17
                p+C+vC + ++++ 
  EHT99262.1  4 PACPVCQAdYTWQD 17
                89******878876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.27
     zf-RRN7 24 CrrChtqe 31
                C +C++++
  EHT99262.1 23 CPSCGHIW 30
                88888875 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   9.2e-05     0.087       1      19 [.       6      29 ..       6      33 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.2e-05
  zf-RING_UBOX  1 CpIClelft........dPlvlpCGHt 19
                  Cp+C+ ++t         P   +CGH+
    EHT99262.1  6 CPVCQADYTwqdaenlnCP---SCGHI 29
                  *********9998877777...6***7 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   6.4e-05      0.06      72      99 ..       5      33 ..       3      45 .. 0.80
   2 ?   -2.5   0.0       5.3     5e+03      23      30 ..      76      83 ..      57      89 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.4e-05
                EETTTS-EEECHHH.HHS-TTTSSS-EEE CS
        HypA 72 rCreCgkefeleek.alrCpkCgsadvei 99
                 C +C+++++ +++ +l+Cp+Cg+  ++ 
  EHT99262.1  5 ACPVCQADYTWQDAeNLNCPSCGHIWTQA 33
                5*********7764599******976555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.3
                ..EEEEEE CS
        HypA 23 arkvtkvk 30
                +++v++++
  EHT99262.1 76 GTRVKSIR 83
                23444444 PP

>> RPA_interact_C  Replication protein A interacting C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   7.9e-05     0.075       2      27 ..       6      32 ..       5      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.9e-05
  RPA_interact_C  2 CPvCkkrklketsevifCe.Cglrlet 27
                    CPvC+ ++  ++ e + C  Cg   ++
      EHT99262.1  6 CPVCQADYTWQDAENLNCPsCGHIWTQ 32
                    ******************98*943333 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   0.00013      0.12      34      64 ..       3      33 ..       1      63 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
     DUF2318 34 ldaCevCekkgYvqegeelvCknCgvrfald 64
                l aC vC+ +   q+ e+l C +Cg  ++ +
  EHT99262.1  3 LPACPVCQADYTWQDAENLNCPSCGHIWTQA 33
                679****887666************999765 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0066       6.2       9      24 ..       4      19 ..       2      22 .. 0.89
   2 ?    5.1   0.1     0.031        30      10      26 ..      22      38 ..      19      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0066
      DUF983  9 daCeaCgldlsharad 24
                +aC++C++d++ ++a+
  EHT99262.1  4 PACPVCQADYTWQDAE 19
                79*********99986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.031
      DUF983 10 aCeaCgldlsharaddg 26
                +C++Cg+ +++a+  d 
  EHT99262.1 22 NCPSCGHIWTQAEGSDS 38
                7**********999886 PP

>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4    0.0003      0.29       3      25 ..       6      28 ..       5      29 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
                    -SSS--B----SSS----SSS-- CS
  DNA_RNApol_7kD  3 CgeCgaevslkkgdpiRCkeCGh 25
                    C  C+a+ + +  + + C  CGh
      EHT99262.1  6 CPVCQADYTWQDAENLNCPSCGH 28
                    889*******************9 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.32     3e+02       3       7 ..       6      10 ..       4      16 .. 0.71
   2 ?   10.8   0.2   0.00042      0.39      17      24 ..      23      30 ..      21      32 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.32
     UPF0547  3 CPeCe 7 
                CP C+
  EHT99262.1  6 CPVCQ 10
                66665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00042
     UPF0547 17 CphCGyvF 24
                Cp CG+++
  EHT99262.1 23 CPSCGHIW 30
                *******9 PP

>> zf-C2H2_3  zinc-finger of acetyl-transferase ESCO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.021        19      14      29 ..       4      19 ..       1      21 [. 0.81
   2 ?    5.3   0.0     0.019        18      15      31 ..      22      38 ..      15      40 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.021
   zf-C2H2_3 14 sqCkeCgMvYnpgspe 29
                ++C++C+  Y+  ++e
  EHT99262.1  4 PACPVCQADYTWQDAE 19
                56********977765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
   zf-C2H2_3 15 qCkeCgMvYnpgspeDe 31
                 C+ Cg ++++ + +D 
  EHT99262.1 22 NCPSCGHIWTQAEGSDS 38
                4*****99999998886 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4      0.32     3e+02      19      23 ..       6      10 ..       4      12 .. 0.57
   2 ?   10.5   0.1   0.00032       0.3       4      10 ..      22      28 ..      15      33 .. 0.67
   3 ?   -2.1   0.0         3   2.8e+03       9      17 ..      49      57 ..      49      58 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.32
  zf-ribbon_3 19 CpyCG 23
                 Cp C+
   EHT99262.1  6 CPVCQ 10
                 55554 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00032
  zf-ribbon_3  4 rCPnCGa 10
                 +CP+CG+
   EHT99262.1 22 NCPSCGH 28
                 4666665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3
  zf-ribbon_3  9 Gaplssddn 17
                 G++l+++d+
   EHT99262.1 49 GNILADGDS 57
                 888899997 PP

>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.3    0.0051       4.8       2      22 ..       5      26 ..       4      28 .. 0.83
   2 ?    3.6   0.4     0.057        54       2      10 ..      22      30 ..      21      39 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0051
        YacG  2 kCPtCkkevewse.enpfrPFC 22
                +CP+C+++ +w++ en   P C
  EHT99262.1  5 ACPVCQADYTWQDaENLNCPSC 26
                6**********99677777887 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.057
        YacG  2 kCPtCkkev 10
                +CP+C++  
  EHT99262.1 22 NCPSCGHIW 30
                8****9755 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.5     0.025        24      26      35 ..       3      12 ..       1      16 [. 0.80
   2 ?    5.6   4.7     0.019        18       8      34 ..       6      28 ..       5      34 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.025
  Zn-ribbon_8 26 ltaCPeCgse 35
                 l+aCP C+++
   EHT99262.1  3 LPACPVCQAD 12
                 688****986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
  Zn-ribbon_8  8 CeeCghefevlqsisdapltaCPeCgs 34
                 C  C+ +++ +q   da++  CP+Cg+
   EHT99262.1  6 CPVCQADYT-WQ---DAENLNCPSCGH 28
                 888888888.77...666777****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 801.53
//
Query:       EHT99263.1  [L=362]
Description: membrane-bound lytic murein transglycosylase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-90  303.1   0.0    2.2e-90  302.9   0.0    1.0  1  SLT_2            Transglycosylase SLT domain
  ------ inclusion threshold ------
       0.01   16.3   0.0      0.023   15.2   0.0    1.6  1  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc
      0.032   13.9   0.0       0.18   11.5   0.0    2.1  1  SLT              Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.9   0.0   3.6e-94   2.2e-90       4     290 ..      58     350 ..      55     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 302.9 bits;  conditional E-value: 3.6e-94
       SLT_2   4 awlael.keeaaaegiseetleaalagvepkprvieldkkqa.......efkktleeYlkrfvtekriakGraflkehaallariekeyGVpaeiivAi 94 
                 + ++++ ++++a++g+++++l+a++ +++  + v++l+ +qa         +  + +Y ++f+t++++++G+af+++++++l+r+++ yGVp+eiiv+i
  EHT99263.1  58 PVAEQFiDKMVAKHGFDRQQLHAIIGQAKRLDYVLRLMDRQApsytppsGPNGAWIRYSDKFITPDNVQNGVAFWNQYQDALQRAQQVYGVPPEIIVGI 156
                 5678899************************99999997776333222244456********************************************* PP

       SLT_2  95 wgvEtryGkntgkfrvldalatlafdg.rRseffrkeliaalklldegdvdpeelkGSwaGamGltQFmPssylkyAvDfdgdgrrDlwnspaDalaSv 192
                 +gvEtr+G+++gk+r+ldalatl+fd+ rRs++f++el+ +l ++++++ dp +lkGS+aGamG+ QFmPssy +yAvDf+gdg+++lw+ p Da++Sv
  EHT99263.1 157 IGVETRWGRVMGKTRILDALATLSFDYpRRSAYFSSELETFLLMARDEKDDPLDLKGSFAGAMGYGQFMPSSYKAYAVDFNGDGHINLWD-PVDAIGSV 254
                 *************************9889************************************************************9.******** PP

       SLT_2 193 AnyLkkhgWqagepwgvevklpaefdellagkkkplaewaalgvkraegkapaaekaeaslllpa.gekgpaflvlknfkvitrYNrStlYalaVaela 290
                 A+y++++gW++ge+++v+++ +a + e+  +++ +++++aa g++++    p + + ++sll  + g++ + + +l+nf++itrYN+St Ya+aV++l+
  EHT99263.1 255 AHYFQQNGWRPGENVAVPASGQAPMLENGFKTRYSVSTLAASGLSPQG---PLDGNDQVSLLRLDlGTRYQYWYGLPNFYAITRYNNSTHYAMAVWQLG 350
                 ************999998888755544433467777**********98...444355566655551555566*************************98 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.9e-06     0.023       2      30 ..     137     165 ..     136     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.9e-06
                      HHHHHHHHHCT.-HHHHHHHHHHHHTTTT CS
  Glucosaminidase   2 eaaleaakkygippsvalaqaalEsgwgt 30 
                      +a+++a++ yg+pp+++++   +E+ wg+
       EHT99263.1 137 DALQRAQQVYGVPPEIIVGIIGVETRWGR 165
                      57899***********************4 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05      0.18       4      79 ..     140     261 ..     137     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
                 HHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTS..............................................EBTTTTBETTTHHHHHHHHT CS
         SLT   4 ikaekkygvepsllaaiaqvESgfnpkAvsksg..............................................avGLmQimpstakrlglrvk 56 
                 + a++ ygv+p++++ i+ vE ++  +++ k+                                               a+G  Q+mps  k+++  ++
  EHT99263.1 140 QRAQQVYGVPPEIIVGIIGVETRWG-RVMGKTRildalatlsfdyprrsayfsseletfllmardekddpldlkgsfagAMGYGQFMPSSYKAYAVDFN 237
                 6788999999999999999999996.56666666777788888888888999999999999999999999999999999******************99 PP

                 .-SHHHHCSHHHHHHHHHHHHHHH CS
         SLT  57 .lsedelldPeknisagakyLksl 79 
                  ++  +l dP+++i   a y++++
  EHT99263.1 238 gDGHINLWDPVDAIGSVAHYFQQN 261
                 99************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2896.40
//
Query:       EHT99264.1  [L=853]
Description: methyl-directed mismatch repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-89  296.9   0.1    1.3e-88  295.9   0.1    1.5  1  MutS_V    MutS domain V
    6.9e-43  145.5   0.0    1.9e-42  144.1   0.0    1.8  2  MutS_I    MutS domain I
      2e-40  139.1   0.6    4.2e-40  138.0   0.6    1.6  1  MutS_III  MutS domain III
    1.5e-33  115.9   0.0    3.7e-33  114.7   0.0    1.7  1  MutS_II   MutS domain II
      2e-29  101.8   0.0    4.5e-29  100.7   0.0    1.6  1  MutS_IV   MutS family domain IV
  ------ inclusion threshold ------
      0.036   14.1   0.0      0.095   12.7   0.0    1.8  1  AAA_14    AAA domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.9   0.1   4.4e-92   1.3e-88       1     188 []     612     799 ..     612     799 .. 0.99

  Alignments for each domain:
  == domain 1  score: 295.9 bits;  conditional E-value: 4.4e-92
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 l+itGpnm+Gksty+rq ali+l+a iGsfvpae++ i+++d+iftRvga+Ddla+g+stFmvEm+Eta+il+nate+slv++DE+GRGtstydGl++a
  EHT99264.1 612 LIITGPNMGGKSTYMRQAALIALMAWIGSFVPAEEVVIGPLDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLA 710
                 59************************************************************************************************* PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHHHTT CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavkeeeedivflykvkegaaeksyGikvaklaglPesvverArevlkele 188
                 +a+ae l+++ika+tlfatHy+elt+l ekle v n+hl+++e+ ++i+f+++v++gaa+ksyG++va+lag+P++v++rAr++lkele
  EHT99264.1 711 WACAENLANRIKAMTLFATHYFELTTLPEKLEGVVNVHLDAVEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARNKLKELE 799
                 **************************************************************************************996 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.0   6.4e-46   1.9e-42       1     112 [.      13     124 ..      13     125 .. 0.99
   2 ?   -2.9   0.0       2.7     8e+03      73      93 ..     751     771 ..     731     792 .. 0.70

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 6.4e-46
                 HHHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEEEEEE-S-HHHHS.S--EE CS
      MutS_I   1 tplmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVavveqtetpaekkgvvkre 99 
                 tp+m+qyl lk++++d++lf+r+GdfYelf++DA+ a+++l+i+ltkr+ s+++ ipmagvP+ha+e+yl++Lv+ g +Va++eq  +pa +kg v+r+
  EHT99264.1  13 TPMMQQYLRLKAEHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVPHHAVENYLARLVQLGESVAICEQIGDPALSKGPVERK 111
                 8************************************************999999******************************************** PP

                 EEEEEBTTC-TTS CS
      MutS_I 100 vvrviTpGtltde 112
                 vvr++TpGt++de
  EHT99264.1 112 VVRIVTPGTISDE 124
                 **********987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.7
                 HHHTT-EEEEEEE-S-HHHHS CS
      MutS_I  73 LvekgykVavveqtetpaekk 93 
                  ve+g ++a++  +++ a++k
  EHT99264.1 751 AVEHGDTIAFMHSVQDGAASK 771
                 578888888888887766663 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.6   1.4e-43   4.2e-40       1     191 []     274     561 ..     274     561 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 1.4e-43
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHHT..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVeeleneelreelrellrrlpDleRllsrislgkakardlka 99 
                 aT+rnLei++nl+g ++e +L  vld+TvT+mG+R+L++wl+ Pl+d ++I +R++ ++el  ++l++ l+  lr+++DleR+l+r++l++a++rdl++
  EHT99264.1 274 ATRRNLEITQNLAG-GTENTLAAVLDKTVTPMGSRMLKRWLHMPLRDSSVIAKRQESIAEL--QALSDVLQPVLRQVGDLERILARLALRTARPRDLAR 369
                 69*********998.5688*****************************************9..8999999999************************** PP

                 HHHHHHHHHTTTTT---SSTHHHHH........HHHHHHHHHHB-SS--SSGGGS--B-T....................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
    MutS_III 100 llealkaleelvallekeklaesee........eslaelleeaideeplalekegedlra....................................... 151
                 +++a+++l+el +ll +  +a+ +         ++l  lle+a++e+p+ l ++g++++                                        
  EHT99264.1 370 MRHAFQQLPELNDLLANAGSAHLKTlrtqigdfSDLCTLLEQAVVESPPVLIRDGGVIAPgyhaeldewraladgatdyldrleirereklgldslkvg 468
                 ***************88888777668888877766779************************************************************* PP

                 .....................................................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .....................................................iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                                                                      + ale++l++ l++ +  +le+l++ a+alaeLDvl  lA
  EHT99264.1 469 fngvhgyyiqvsrgqshqvpihyvrrqtlknaeryiipelkeyedkvltskgkALALEKSLYEGLFDLLLPHLEVLQSSAAALAELDVLSNLA 561
                 *****************************************************9***********************************9988 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   1.2e-36   3.7e-33       1     137 []     133     258 ..     133     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 1.2e-36
                 -EEEEEEEETTTSEEEEEEEETTTTEEEEEEEEE-HHHHHHHHHH-ESEEEEESS-SCCCHHHHHHCHCTTT-EEEEESCCCCSHCCHHHHCHHHB--S CS
     MutS_II   1 nylaAisekregrrvGlafiDlstgefvvsefedfeeleaeLsrlsPkElllpedlsestaeeessklrelrsrvgvretvefesekaserleedfsve 99 
                 n+laA++    +r +G+a +D+s+g+f++se +d e ++aeL+r +P+Ell+ped+s +       +l ++r+++++r+ +efe+++a+++l+++f+++
  EHT99264.1 133 NLLAAVVH--GARGYGYATLDISSGRFRLSEPMDLETMAAELQRTNPAELLYPEDFSPM-------SLIDQRRGLRRRPLWEFEIDTARQQLTLQFGTR 222
                 7899***9..9999******************************************988.......79******************************* PP

                 TTTTTTTGGG-HHHHHHHHHHHHHCCCCCSCCCCT-CC CS
     MutS_II 100 dldgfglekekklalaAlgalisYleetqkekelshle 137
                 dl gfg+ ++  l l+A+g+l++Y+++tq++ +l+h++
  EHT99264.1 223 DLNGFGV-EQAHLGLRAAGCLLQYVKDTQRT-SLPHIR 258
                 *******.9**********************.****96 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   1.5e-32   4.5e-29       1      90 [.     430     519 ..     430     521 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 1.5e-32
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE-TCCCTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgikslkveynkvlGyylevtrseakkvpkefirlqtlknseryttaelkkleaelleae 90 
                 g+++eLde+r++ ++++++l++le +ereklg++slkv++n+v+Gyy++v+r ++++vp +++r+qtlkn+ery+ +elk++e+++l+ +
  EHT99264.1 430 GYHAELDEWRALADGATDYLDRLEIREREKLGLDSLKVGFNGVHGYYIQVSRGQSHQVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSK 519
                 89***********************************************************************************99876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.2e-05     0.095       2      76 ..     609     700 ..     608     725 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.......vkkesilyinldderdkkladpe......kllelileklke......ekktylflDEiqev 76 
                 r++l+itG+   GK+t+++q +   l       v++e+++   ld+  ++  a  +      +++ ++ e   +       +++++++DEi + 
  EHT99264.1 609 RRMLIITGPNMGGKSTYMRQAALIALmawigsfVPAEEVVIGPLDRIFTRVGAADDlasgrsTFMVEMTET--AnilhnaTENSLVLMDEIGRG 700
                 789*****************9866668999***99999999999998874433222223333334333333..123445678999*****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6079.76
//
Query:       EHT99265.1  [L=194]
Description: hypothetical protein CKS_1270 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-16   57.6   0.5    1.6e-15   56.9   0.0    1.6  2  HTH_3       Helix-turn-helix
    1.2e-13   51.2   0.7      2e-13   50.5   0.7    1.4  1  2TM         2TM domain
    1.1e-09   38.5   0.5    2.5e-09   37.4   0.1    1.8  2  HTH_31      Helix-turn-helix domain
    1.6e-08   34.4   0.0    9.1e-08   32.0   0.0    1.9  2  HTH_19      Helix-turn-helix domain
    1.2e-07   32.0   0.0    5.1e-07   30.0   0.0    1.9  2  HTH_26      Cro/C1-type HTH DNA-binding domain
    5.7e-06   26.1   0.1    9.1e-06   25.4   0.1    1.3  1  HTH_25      Helix-turn-helix domain
     0.0089   15.8   0.4      0.031   14.1   0.0    2.0  2  HTH_23      Homeodomain-like domain
  ------ inclusion threshold ------
      0.026   14.7   0.1        2.7    8.2   0.0    3.0  3  HTH_17      Helix-turn-helix domain
      0.027   14.0   1.0      0.038   13.5   1.0    1.1  1  Frag1       Frag1/DRAM/Sfk1 family
      0.032   14.2   0.4       0.13   12.3   0.1    2.0  2  HTH_29      Winged helix-turn helix
      0.039   13.5   0.2        0.1   12.1   0.2    1.7  1  Sigma70_r4  Sigma-70, region 4
      0.053   13.5   0.1       0.12   12.3   0.1    1.6  1  HTH_Crp_2   Crp-like helix-turn-helix domain
       0.14   10.9   0.0       0.16   10.7   0.0    1.0  1  DUF2207     Predicted membrane protein (DUF2207)
       0.26    9.5   0.4       0.31    9.2   0.4    1.0  1  YfhO        Bacterial membrane protein YfhO
        2.8    8.0   4.7        6.5    6.9   0.2    3.0  3  Tom5        Mitochondrial import receptor subunit or transloc


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.3e-18   1.6e-15       1      55 []       7      60 ..       7      60 .. 0.94
   2 ?   -3.2   0.1       7.8   9.3e+03       4       9 ..     147     152 ..     144     158 .. 0.50

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.3e-18
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                ++e+R+++ +sqe+LAe++G+s +ti+riEnG   Psletl +la ++ +  ++l
  EHT99265.1  7 VREYRLARAWSQEQLAEMAGLSTRTIQRIENG-DPPSLETLSALAAVFEINVTDL 60
                69******************************.66*************9988765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.8
                 HHHHTT CS
       HTH_3   4 lRkqlg 9  
                 +R+q+ 
  EHT99265.1 147 KRLQKI 152
                 333333 PP

>> 2TM  2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.7   1.6e-16     2e-13       3      75 ..      78     153 ..      76     154 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.6e-16
         2TM   3 akkrvkeikgFyrhlvvYlivniflilinl....gsswflwpilfWgiglllhalkvFgtekffgk..eWeerkiekll 75 
                 a++++  +++Fyr l++ ++v ++l ++n     ++ w+lw++ +Wg  ll+ al+ F    f ++  +W++++++k++
  EHT99265.1  78 ARQQLATESRFYRSLFSAVVVCALLYVLNHftapNDRWSLWVAAIWGALLLVRALRLFI---FKDAirRWQQKRLQKII 153
                 8999999**********************88***99**********************7...3333668*******986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   2.1e-12   2.5e-09       6      57 ..       7      56 ..       6      63 .. 0.91
   2 ?   -2.8   0.0       7.2   8.6e+03      29      38 ..     139     148 ..     129     160 .. 0.63

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 2.1e-12
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +r++R ++ +sqe++Ae +g+s  t+ r+E+G    ps+++l ala ++   
  EHT99265.1  7 VREYRLARAWSQEQLAEMAGLSTRTIQRIENGDP--PSLETLSALAAVFEIN 56
                699******************************9..9*********998765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.2
      HTH_31  29 stlsrlEqGr 38 
                 + ++r+ q r
  EHT99265.1 139 DAIRRWQQKR 148
                 5555555544 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   7.6e-11   9.1e-08       3      61 ..       6      62 ..       5      66 .. 0.92
   2 ?   -0.2   0.0      0.86     1e+03       2      15 ..     147     160 ..     147     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 7.6e-11
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                +++e+R  + ++qe+lae++g s + i  iEng  d ps e+l ++a  ++i+++ l +
  EHT99265.1  6 NVREYRLARAWSQEQLAEMAGLSTRTIQRIENG--DPPSLETLSALAAVFEINVTDLTD 62
                79*******************************..5788**************998865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.86
      HTH_19   2 erLkeaReelgltq 15 
                 +rL++++ ++glt 
  EHT99265.1 147 KRLQKIIAQAGLTS 160
                 69**********96 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   4.3e-10   5.1e-07       8      58 ..      13      61 ..       6      65 .. 0.90
   2 ?   -0.9   0.0       1.9   2.2e+03       1      13 [.     148     160 ..     142     180 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 4.3e-10
      HTH_26  8 drgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLl 58
                +r  ++ +La+++g+s  t++r+ +g    +sl+tL+++++++++++ DL 
  EHT99265.1 13 ARAWSQEQLAEMAGLSTRTIQRIENGD--PPSLETLSALAAVFEINVTDLT 61
                677899********************9..5*******************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
      HTH_26   1 kLrelmadrgitk 13 
                 +L++++a+ g+t+
  EHT99265.1 148 RLQKIIAQAGLTS 160
                 5677777776654 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   7.6e-09   9.1e-06       3      39 ..       8      44 ..       6      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7.6e-09
                HHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS CS
      HTH_25  3 raaRearglsleevaketkIrkdylealEeddfdalp 39
                r+ R+ar +s e++a+   +++++++++E++d+ +l+
  EHT99265.1  8 REYRLARAWSQEQLAEMAGLSTRTIQRIENGDPPSLE 44
                789*****************************98887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-05     0.031      15      38 ..      13      36 ..       8      42 .. 0.87
   2 ?   -1.6   0.1       2.1   2.5e+03      34      39 ..     141     146 ..     138     157 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
      HTH_23 15 aeGlsvreIAreLgvsrrTvyrwl 38
                a+ +s+++ A++ g s rT++r+ 
  EHT99265.1 13 ARAWSQEQLAEMAGLSTRTIQRIE 36
                346*******************95 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
      HTH_23  34 vyrwlk 39 
                 ++rw +
  EHT99265.1 141 IRRWQQ 146
                 455533 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0023       2.7       5      25 ..      19      38 ..      16      43 .. 0.88
   2 ?    1.3   0.3      0.33   3.9e+02      35      50 ..     133     148 ..     129     149 .. 0.86
   3 ?    0.6   0.0      0.56   6.7e+02      14      27 ..     170     183 ..     165     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
      HTH_17  5 eEaAelLgvsrstvyrlirrg 25
                e++Ae+ g+s +t++r i +g
  EHT99265.1 19 EQLAEMAGLSTRTIQR-IENG 38
                89*************9.7776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.33
      HTH_17  35 rwriprsdleewlekr 50 
                 r+ i ++++ +w +kr
  EHT99265.1 133 RLFIFKDAIRRWQQKR 148
                 478999*******997 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.56
      HTH_17  14 srstvyrlirrgel 27 
                    ++y+l+++g+ 
  EHT99265.1 170 TAGKAYELVSSGRV 183
                 56789******986 PP

>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   3.2e-05     0.038     131     209 ..      91     168 ..      86     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
       Frag1 131 gflyvllqtalyykmgrhyvwnkstisfrlkvvllilavvlailfgvffvrhkkkcgygayslsAifEWllafwfiiff 209
                 +++++++ +al+y +++  + +++++s+++ +++ +l +v a+ +++f++  ++  ++ ++ + A +   +a +  +++
  EHT99265.1  91 SLFSAVVVCALLYVLNHF-TAPNDRWSLWVAAIWGALLLVRALRLFIFKDAIRRWQQKRLQKIIAQAGLTSAGCTSLLH 168
                 78999*******999977.7******************************98888888888888877777666666665 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.13       8      32 ..      12      35 ..      11      37 .. 0.92
   2 ?   -1.0   0.0       1.5   1.8e+03      32      40 ..     140     148 ..     137     156 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
      HTH_29  8 laeGvstvsqiAkllglsrrtvyrw 32
                la+++s   q+A++ gls rt++r+
  EHT99265.1 12 LARAWS-QEQLAEMAGLSTRTIQRI 35
                689998.****************96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
      HTH_29  32 wlkrfeegG 40 
                 +++r+++++
  EHT99265.1 140 AIRRWQQKR 148
                 455555555 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   8.5e-05       0.1      17      42 ..      12      37 ..       7      38 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.5e-05
                HTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 17 fgeglTleEIgerlgiSrerVrqiek 42
                  + +++e+++e+ g+S  ++ +ie+
  EHT99265.1 12 LARAWSQEQLAEMAGLSTRTIQRIEN 37
                46789*******************95 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1    0.0001      0.12      22      41 ..      16      35 ..       3      37 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                HHHHHHHHHTTSSHHHHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsri 41
                 +qe+lA+m Gl+  t+ ri
  EHT99265.1 16 WSQEQLAEMAGLSTRTIQRI 35
                69***************997 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.16     356     441 ..      56     148 ..      27     156 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
     DUF2207 356 alkkwksavkk...kergyfdkkgkkklkklsalglgliilglilillallllvll....lvfllilllillliaiivlllfsrllgrrteeG 441
                 +++++++a  +   +   y++++ ++ +++++++  ++  ++++++l++l  +++     + + + +  +lll+ ++ l++f+  ++r+ ++ 
  EHT99265.1  56 NVTDLTDAPANngeALDSYISDARQQLATESRFYRSLFSAVVVCALLYVLNHFTAPndrwSLWVAAIWGALLLVRALRLFIFKDAIRRWQQKR 148
                 555555555556665666777777777777777777777777777666655555446666999999999999999999999999999998875 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00026      0.31     316     396 ..      92     179 ..      79     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00026
        YfhO 316 lilsfllpplnlvwhgfqaPvgfpyRfs.filsflllllaaealk.........elkqlkklkllaailllvlllliilllknkksynflt 396
                 l+  +++ +l  v++ f+aP+    R+s ++ +++ +ll ++al+         +++q +  k++a   l +++++  l    +k y++++
  EHT99265.1  92 LFSAVVVCALLYVLNHFTAPN---DRWSlWVAAIWGALLLVRALRlfifkdairRWQQKRLQKIIAQAGLTSAGCTSLLHHTAGKAYELVS 179
                 667788889999*********...***87999*************9888888755555546677777777777666666555566666655 PP

>> Tom5  Mitochondrial import receptor subunit or translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.46   5.5e+02      10      27 ..      17      34 ..      13      35 .. 0.89
   2 ?    6.9   0.2    0.0054       6.5      22      37 ..      89     104 ..      78     104 .. 0.80
   3 ?    0.1   0.1       0.7   8.4e+02      13      34 ..     146     167 ..     145     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.46
        Tom5 10 SeeEikaaeaeArqtvkn 27
                S+e+++++   +++t+++
  EHT99265.1 17 SQEQLAEMAGLSTRTIQR 34
                99********9****996 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0054
        Tom5  22 rqtvknfaaaaalLyl 37 
                 +++++ +++++alLy+
  EHT99265.1  89 YRSLFSAVVVCALLYV 104
                 67999**********7 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.7
        Tom5  13 EikaaeaeArqtvknfaaaaal 34 
                 ++++++  A++ ++ ++++++l
  EHT99265.1 146 QKRLQKIIAQAGLTSAGCTSLL 167
                 89999999********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1427.95
//
Query:       EHT99266.1  [L=243]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-21   74.8   0.0    9.1e-21   74.1   0.0    1.3  1  2-ph_phosp  2-phosphosulpholactate phosphatase


Domain annotation for each model (and alignments):
>> 2-ph_phosp  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   5.1e-25   9.1e-21      14     217 ..      28     228 ..      19     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 5.1e-25
                 TEEEEE-TTTHHHHHHHHHHTT-SEEEEESSHHHHH.HTCCH.HGCCEEEEE-BTTB--TTSSB-S-GGGHHHHHHTTSEEEEE-CCHHHHHHHCCT.S CS
  2-ph_phosp  14 dvvvviDvLRAtstivtaLanGakavipvssveeal.elakklpeekvllaGErgglkiegfdlgnSPleytkekvkgktvvltTtNGTralekaas.a 110
                 d++v+iDv+  ++++++a +nGa+ v+p+   ++   ++a++     v  ++    ++ +g  ++ SP  + +    ++++vl + NG+ +  +a++  
  EHT99266.1  28 DIIVIIDVMSFSTCVSVAVENGAR-VYPYPWKDHSVtQYAQS-----VGAIAANSDRRFSGEGYSLSPRTLLSV-RPDEKLVLPSPNGSATCFRARErG 119
                 589******************985.99998777665045554.....4445555667777777899**998655.67999*****************89 PP

                 SEEEEE-STTHHHHHHHHHHHTSSEEEEE--BT.....TB--HHHHHHHHHHHHHHHHHS.SEE-HHHHHHHHHHHC.-STHHHHHHHSHHHHHHHHTT CS
  2-ph_phosp 111 krvligsllNakavaeklkelakevvivcaGte.....gefsleDtlcAgalveelekeeelelsDaalaalalyes.kedllealkksshgkrLkelg 203
                   vl+g+l+N++a+ae++++ ++ ++iv  G++      + ++eD+++Ag ++++l +    +ls +a++a a++++ +++  +al +++++ +L++ g
  EHT99266.1 120 VPVLTGCLRNLTATAEACRAFSR-ILIVPCGERwpdgsLRPCIEDYVVAGGIIAALAQR---TLSPEAQTAVAAWHAhQSQNFAALFHCASAVELIQRG 214
                 **********************9.*******9888877799****************95...8*************9889999**************** PP

                 -HHHHHHHTSTSS- CS
  2-ph_phosp 204 leeDleycaqldll 217
                 + +D+++c+++d  
  EHT99266.1 215 FPDDVTLCLTKDAA 228
                 **********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1733.47
//
Query:       EHT99267.1  [L=330]
Description: RNA polymerase, sigma S (sigma 38) factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-22   79.2   2.8    9.8e-21   73.6   1.5    2.5  2  Sigma70_r3    Sigma-70 region 3
    1.6e-21   75.8   0.6    3.3e-21   74.8   0.2    1.8  2  Sigma70_r2    Sigma-70 region 2
    3.8e-17   61.5   3.7    2.5e-15   55.7   2.8    2.6  2  Sigma70_r4    Sigma-70, region 4
    9.6e-11   41.5   0.1      3e-10   39.9   0.1    1.9  1  Sigma70_r1_2  Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   1.5   2.2e-24   9.8e-21       2      76 ..     174     248 ..     173     250 .. 0.97
   2 ?    4.2   0.0      0.01        46      20      40 ..     285     305 ..     281     310 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 2.2e-24
                 HHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3   2 klnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespee 76 
                 +ln + r++reL+++l++eP++eEiAe+L+ ++++V ++l+++++ +S+d+p g +++++l d+l+d++ ++pe+
  EHT99267.1 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPED 248
                 799**********************************************************************98 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.01
                 XXXHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  20 ePtpeEiAeeLglseekVrev 40 
                 ++t e++  e gl+ e+Vr++
  EHT99267.1 285 AATLEDVGREIGLTRERVRQI 305
                 5899***************98 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.2   7.5e-25   3.3e-21       1      70 [.      94     163 ..      94     164 .. 0.96
   2 ?   -2.8   0.0       1.2   5.5e+03       2      26 ..     264     291 ..     263     294 .. 0.69

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7.5e-25
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 ++e++l+lv+++arr+ ++g+   Dl+ e++l+l+rave+fdperg++fs+++++++r+++ +++  + r
  EHT99267.1  94 MIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR 163
                 689***********************************************************99988877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHC..T-THH.HHHHH CS
  Sigma70_r2   2 verylplvkrlarrl..lgsga.daeDl 26 
                 +e + ++   larr+  lg  a + eD+
  EHT99267.1 264 FELNAKQREVLARRFglLGYEAaTLEDV 291
                 5666677777899998777664477775 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0075        34      19      39 ..     191     211 ..     177     214 .. 0.80
   2 !   55.7   2.8   5.6e-19   2.5e-15       1      50 []     262     315 ..     262     315 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0075
                 TT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  19 eglTleEIgerlgiSrerVrq 39 
                 ++ + eEI+e+l+ +   V++
  EHT99267.1 191 HEPSAEEIAEQLDKPVDDVSR 211
                 56688********99988887 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 5.6e-19
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L +L++++revl  rf    +e  Tle++g++ g++rerVrqi+ ++lr+LR+
  EHT99267.1 262 WLFELNAKQREVLARRFgllgYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315
                 6889*************************************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   6.7e-14     3e-10       1      32 [.      56      87 ..      56      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 6.7e-14
                  HHHHHHHHHHHHSX--THHHHHHHHHHHHCCH CS
  Sigma70_r1_2  1 DpvrlYLrEIGriPLLtaeEEveLAkrieaGd 32
                  D+++lYL EIG  PLLtaeEEv  A+r+ +Gd
    EHT99267.1 56 DATQLYLGEIGYSPLLTAEEEVLFARRALRGD 87
                  899***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2532.01
//
Query:       EHT99268.1  [L=374]
Description: putative outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-31  108.7   0.8    1.3e-31  108.7   0.8    2.6  3  Peptidase_M23    Peptidase family M23
    3.5e-11   43.0   0.2    9.4e-11   41.6   0.1    1.8  2  LysM             LysM domain
     0.0023   17.7   0.1       0.23   11.3   0.0    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.053   13.5   1.2        3.6    7.6   0.0    3.1  3  RnfC_N           RnfC Barrel sandwich hybrid domain


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.36   1.6e+03      20      44 ..     100     130 ..      85     153 .. 0.66
   2 ?   -1.8   0.1       0.8   3.6e+03      61      79 ..     198     216 ..     155     221 .. 0.57
   3 !  108.7   0.8   2.9e-35   1.3e-31       3      96 .]     274     367 ..     272     367 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.36
                    SSEEEEEEEEET.....TT.EEEEEEEECTC CS
  Peptidase_M23  20 adGtVvfagkke.....gy.Gnvviidhgdg 44 
                    ++G++v+ + ++     +y G++  ++ gd 
     EHT99268.1 100 QNGRIVYNRSYQnipkgSYsGQTYTVKRGDT 130
                    5566666666333445566677777777666 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.8
                    EEE-TTCEEEEEBSTSSCS CS
  Peptidase_M23  61 qkVkaGqvIGtvgstgrst 79 
                      V++  vI ++ ++g+s+
     EHT99268.1 198 APVAQQPVITYSDDSGNSN 216
                    3355555555555555555 PP

  == domain 3  score: 108.7 bits;  conditional E-value: 2.9e-35
                    ESSEEEEETTT-EEEESSSEEEEEEEE.ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagk.kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +kGidia ++g+pV+A+a+G+Vv+ag+  +gyGn++ii+h+d y + yah++++ v+e+q+VkaGq+I+t+gstg ++   Lhfeir +gk+v+p
     EHT99268.1 274 NKGIDIAGSRGQPVVATASGRVVYAGNaLRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTG-TSSVRLHFEIRFKGKSVNP 367
                    79*************************988*********************************************.6679**************9 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   2.1e-14   9.4e-11       1      43 [.     123     165 ..     123     166 .. 0.98
   2 ?   -2.4   0.0       1.2   5.3e+03      35      41 ..     335     341 ..     330     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.1e-14
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 YtVk+GDTL+ IA   g ++++l++ Nn+++p  + +Gq+L++
  EHT99268.1 123 YTVKRGDTLFYIAWITGNDFRDLAQRNNVQPPYSLNVGQTLQV 165
                 9****************************************87 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 --TTEEE CS
        LysM  35 ifpGqkL 41 
                 +++Gqk+
  EHT99268.1 335 VKAGQKI 341
                 799**98 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.024   1.1e+02      23      33 ..     124     134 ..     123     135 .. 0.90
   2 ?   -2.4   0.0      0.99   4.5e+03       7      20 ..     184     197 ..     183     197 .. 0.79
   3 !   11.3   0.0   5.1e-05      0.23      16      33 ..     327     344 ..     325     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.024
  Biotin_lipoyl_2  23 rVkaGdvLael 33 
                       Vk Gd+L+ +
       EHT99268.1 124 TVKRGDTLFYI 134
                      5********87 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.99
  Biotin_lipoyl_2   7 apvsGrVaqlnVkd 20 
                      a++sG V++  +k+
       EHT99268.1 184 ASQSGIVTAPQIKQ 197
                      789****9876665 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 5.1e-05
  Biotin_lipoyl_2  16 lnVkdGqrVkaGdvLael 33 
                       +V++ q+VkaG+ +a+ 
       EHT99268.1 327 MLVREQQEVKAGQKIATM 344
                      589*************97 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.029   1.3e+02      54      84 ..     169     199 ..     146     211 .. 0.73
   2 ?   -0.4   0.0      0.25   1.1e+03      58      79 ..     279     297 ..     273     309 .. 0.75
   3 ?    7.6   0.0   0.00081       3.6      43      64 ..     326     347 ..     319     358 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.029
      RnfC_N  54 kGqkiaeaegfvsapvhasvsGtVka..iekrl 84 
                  Gq i+  +++  ++  as sG V+a  i++++
  EHT99268.1 169 SGQPITGGNAI--TAADASQSGIVTApqIKQAP 199
                 48888888887..55578999999862244444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.25
      RnfC_N  58 iaeaegfvsapvhasvsGtVka 79 
                 ia ++g    pv a  sG+V+ 
  EHT99268.1 279 IAGSRGQ---PVVATASGRVVY 297
                 5555554...999999999975 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00081
      RnfC_N  43 kplvkvgdkVlkGqkiaeaegf 64 
                 ++lv + ++V+ Gqkia+ +++
  EHT99268.1 326 TMLVREQQEVKAGQKIATMGST 347
                 789**************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2839.34
//
Query:       EHT99269.1  [L=208]
Description: L-isoaspartate protein carboxylmethyltransferase type II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-74  248.1   0.0    8.1e-74  247.9   0.0    1.0  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    7.7e-06   25.8   0.0    1.1e-05   25.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.7e-05   25.5   0.0    3.1e-05   24.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    7.6e-05   21.9   0.0     0.0001   21.5   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0012   19.4   0.0      0.003   18.2   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   14.9   0.0      0.015   14.5   0.0    1.2  1  DREV             DREV methyltransferase
      0.013   15.3   0.0      0.026   14.3   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
       0.12   12.0   0.1       0.19   11.4   0.1    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.9   0.0   3.6e-77   8.1e-74       4     208 ..       7     205 ..       4     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.9 bits;  conditional E-value: 3.6e-77
                 HHHHHHHHHTTS---HHHHHHHHHS-GGGGSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEE CS
        PCMT   4 ealieelkkkgviksdkvaealeevdReefvpesfkekaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvv 102
                 e l+ +l+++g i++++ ++a+++v+Re+f++e+f++ka+++++l+ig ++tiS+p+mva+++ llel+  +rvLe+G+GsGy+ta+la+lv+++    
  EHT99269.1   7 ETLLAQLRQQG-IHDEHLLKAIADVPRERFIDEAFEHKAWDNMALPIGSGQTISQPYMVARMTALLELDVHSRVLEIGTGSGYQTAILAHLVEHVY--- 101
                 789********.9********************************************************************************999... PP

                 EEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESBSSSEEEEEEEEETTTEEEEEEEEEE- CS
        PCMT 103 sierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaapeiPealidQLkeGGrlvvPvgeeeeQvlklvdkkadgkvvikkleevr 201
                 s+erik l+++akr+lk+ldl+nv++++gDG++G++ + P+dai+v+aa+peiP+ali QL+eGG++v+Pvg ee+Qvlk++++++ g+++ ++ e vr
  EHT99269.1 102 SVERIKGLQWHAKRRLKQLDLHNVSTRHGDGWQGWPSRGPFDAIIVTAAPPEIPTALIAQLAEGGIMVLPVG-EEQQVLKRLRRRG-GEITEETIEPVR 198
                 ************************************************************************.9************.************ PP

                 --B-BCC CS
        PCMT 202 fvpltdk 208
                 fvpl+++
  EHT99269.1 199 FVPLVQG 205
                 ****975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.7e-09   1.1e-05       4     108 ..      76     169 ..      73     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.7e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkilee 96 
                      + rvl++G+G+G+ t  la+++    +v+++++ +    +A+ ++++l l nv+ ++gd  +  ++   + +fD i+       +a+p++i   
       EHT99269.1  76 HSRVLEIGTGSGYQTAILAHLV---EHVYSVERIKGLQWHAKRRLKQLDLHNVSTRHGDGWQgWPS---RGPFDAIIV------TAAPPEIPTA 157
                      679****************765...48********************************8887995...499***998......4556666666 PP

  Methyltransf_31  97 iervlkpggill 108
                      ++  l +ggi++
       EHT99269.1 158 LIAQLAEGGIMV 169
                      666666666555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.4e-08   3.1e-05       1      73 [.      79     150 ..      79     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.4e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEEST CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssga 73 
                      vL++G+G+G  t+ la+ +  ++v+ v+  +++  +a++r+++ +l nv+ ++gd  +     g fD+++++ a
       EHT99269.1  79 VLEIGTGSGYQTAILAHLV--EHVYSVERIKGLQWHAKRRLKQLDLhNVSTRHGDGWQGWPSRGPFDAIIVTAA 150
                      9*****************8..9*******************998889*********66555778*****99644 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.5e-08    0.0001      24      87 ..      69     134 ..      56     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.5e-08
                 HHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCG CS
      RrnaAD  24 dklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklkvvhqDflk 87 
                   l+l     vleig+G G +T++La  +++v ++E  + L  + + +l+  + +++   h D+ +
  EHT99269.1  69 ALLELDVHSRVLEIGTGSGYQTAILAHLVEHVYSVERIKGLQWHAKRRLKqlDLHNVSTRHGDGWQ 134
                 5567777889*******************************9999999998777888888888765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06     0.003       1      69 [.      80     149 ..      80     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-T.T-EEEEEEES CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfed.nsfDlvvsse 69 
                      L++G+G+G+ ++ la+ +++v+ v+  k +   ak++ ++ +l +v+ +++d  +   ++ + fD+++++ 
       EHT99269.1  80 LEIGTGSGYQTAILAHLVEHVYSVERIKGLQWHAKRRLKQLDLhNVSTRHGDGWQ-GWPSrGPFDAIIVTA 149
                      89*************999**********************9999999*****998.444437999998765 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.5e-06     0.015      96     136 ..      77     121 ..      63     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.5e-06
        DREV  96 kklldlGaGdGeitkrvaptfeevyate....lsetmrdrlkkkk 136
                  ++l++G+G G  t ++a  +e+vy+ e    l ++ + rlk+++
  EHT99269.1  77 SRVLEIGTGSGYQTAILAHLVEHVYSVErikgLQWHAKRRLKQLD 121
                 69************************9933333444444555554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.026      16      89 ..      70     148 ..      58     172 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
  Methyltransf_23  16 llpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.........kakkaqkdqfdeq.......eaaepqgkfdlIvlr 89 
                      ll +l+  +rvL+iG+G+G+ + +l+  + +v+ v+    ++  a+         +           +       + +++ g fd I+ +
       EHT99269.1  70 LL-ELDVHSRVLEIGTGSGYQTAILAHLVEHVYSVERIKGLQWHAKrrlkqldlhNV----------StrhgdgwQGWPSRGPFDAIIVT 148
                      44.388999**********99999988877777777743222222233333222222..........12233333555566777777665 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.5e-05      0.19      30      78 ..      65     116 ..      55     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.5e-05
       GCD14  30 sliimkLelkpGsvvvesGtGsgslshaiar...tvaPtGhlftfefheqra 78 
                 + ++  Lel   s+v+e GtGsg  +  +a     v    ++  +++h++r 
  EHT99269.1  65 ARMTALLELDVHSRVLEIGTGSGYQTAILAHlveHVYSVERIKGLQWHAKRR 116
                 6678899***************987666555000455566667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1659.07
//
Query:       EHT99270.1  [L=253]
Description: broad specificity 5'(3')-nucleotidase and polyphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-59  199.1   0.1    7.5e-59  198.8   0.1    1.1  1  SurE      Survival protein SurE


Domain annotation for each model (and alignments):
>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.8   0.1   4.2e-63   7.5e-59       1     192 [.       3     180 ..       3     183 .. 0.91

  Alignments for each domain:
  == domain 1  score: 198.8 bits;  conditional E-value: 4.2e-63
                 EEEE-SS-TT-HHHHHHHHHHTTTTSEEEEEEESSS-TTCTTS--SSSEEEEEEEECSTTTCEEEE.SS-HHHHHHHHHHTTTTTS.SSEEEEEEEES- CS
        SurE   1 iLltNDDGieapgiralvealaaaghevvvvaPdserSgigkaltleeplrveseeeeeeeeeyav.sGtPadcvklaleellkekkpdlVvSGiNhGa 98 
                 iLl+NDDGi+apgi++l++al++  +ev vvaPd++rSg++++ltle+plr+ ++    e+  +av  GtP+dcv l++++l++  +pd+VvSGiN G+
  EHT99270.1   3 ILLSNDDGIHAPGIQTLAKALRQ-FAEVQVVAPDRNRSGASNSLTLETPLRTFTH----ENGDIAVqMGTPTDCVYLGVNALMQP-RPDIVVSGINAGP 95 
                 8*********************6.56************************94433....456666669***************75.7************ PP

                 --GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSSSS-SSS---HHHHHHHHHHHHTTETTS-...SS-EEEEEEESS.GCG-SEEEE-B--CCS CS
        SurE  99 NlgtdvlySGTvgAaleaalegipaiAvSlaskkeeekkeedtfeaaakvaaklveklieklllekvellnvNvPeleeeeikgvkvtrlgrrr 192
                 Nlg+dv+ySGTv+Aa+e+ + g+paiAvSl+ +   e     ++++aa+v+++l++ l +   l+++ +ln+NvP+l+ +e+kg++vtr g r+
  EHT99270.1  96 NLGDDVIYSGTVAAAMEGRHLGLPAIAVSLNGH---E-----HYATAAAVTCALLKALSR-EPLRTGRILNINVPDLPLAEVKGIRVTRCGSRH 180
                 ******************************953...4.....59999********88855.5569**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2060.10
//
Query:       EHT99271.1  [L=346]
Description: tRNA(Glu) U13 pseudouridine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-66  224.2   0.0    4.6e-45  154.2   0.0    2.0  2  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.0   2.6e-49   4.6e-45       6     176 ..       4     167 ..       2     181 .. 0.86
   2 !   68.6   0.0   2.4e-23   4.3e-19     256     416 .]     183     334 ..     166     334 .. 0.93

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 2.6e-49
        TruD   6 lyvtdtegigGrlrespeDFiVeEieefsgeeeadegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlis..irkvepeelea 102
                  y+   +g  G ++++peDF V+E   +     + ege++++r++k++++t  ++++la+ ++i  +++++aG+KD++AvT Q+++  + +    +l  
  EHT99271.1   4 QYLHGVPGATGVIKARPEDFEVKEDLGYRP---DGEGEHVLVRIRKTGANTRFVAEALAKFMKIPARDLSYAGMKDRHAVTEQTLCfrVPGNAMPNLTG 99 
                 599999******************966633...478**************************************************3334455556777 PP

        TruD 103 leikdvelevvgrarrklrlGdLaGNkFeirvrdvaeeeeaakraeeileeleekggvPNyfGvQRFGsrrpvt 176
                 ++ ++ve+++v+r++rklr+G LaGN+F++++r+v+++    +++e+ l++++e+g vPNyfG QRFG++  ++
  EHT99271.1 100 FASEGVEILEVVRHKRKLRVGALAGNAFRLTIRQVSQR----DDIEARLKQIRERG-VPNYFGEQRFGRN-GNN 167
                 799*******************************8444....47**********98.***********96.444 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 2.4e-23
        TruD 256 pknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeerlpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeierevl 354
                 ++n + l ++A++S lFN+v s Rl+++ +l+++++GD +  + +      +  +++ ++ e+++  +++    +tapl+G   + ++g++ ++e++ l
  EHT99271.1 183 DRNKRGLMLSAARSALFNQVTSLRLQQQGSLTQVMNGDALQLTGRG-----SWFVAQPEEREALQARVDQHALRITAPLPGKGEAGPQGDALAFEEHCL 276
                 566778999********************************99776.....8999999***************************************** PP

        TruD 355 eeegleledFklpklpelsskGtrRaillrvedlelsaeede.ltleFsLpkGsYATvvlrEi 416
                 ++  +el    + +    +++ +rRa+l+ ++dl+ +  +d  ltl+F Lp Gs+AT+v+rE+
  EHT99271.1 277 AD-AVELRALLVRE----RVEASRRAMLVVPRDLHWQWLDDAtLTLQFWLPAGSFATSVVREL 334
                 *9.89999999988....88889*************9999887******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2529.29
//
Query:       EHT99272.1  [L=160]
Description: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-66  221.1   0.0    9.1e-66  220.9   0.0    1.0  1  YgbB      YgbB family


Domain annotation for each model (and alignments):
>> YgbB  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   5.1e-70   9.1e-66       1     154 [.       1     154 [.       1     155 [. 0.99

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 5.1e-70
                 EEEEEEEEEEEEEEECEEEETTEEEEESEEEESSSTCHHHHHHHHHHHHHHTT--SHHHHSTTTCGGCTTTCHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
        YgbB   1 iriGlGyDvHrlaegrklvlgGveieaekgllahSDgDvllhAlvDAllGalalgdigelfpdtdpkykgadSaelLeevlellkekgykivnvdvtii 99 
                 +riG+G+DvH++  + +lv+gGv+i+ e g+ ahSDgDv+lhAl+DAllGa+a+gdig+lfpdtdp++kgadS+ lL+e+++++++kgy+i+nvdvtii
  EHT99272.1   1 MRIGHGFDVHAFGGEGPLVIGGVRIPFEYGFIAHSDGDVALHALTDALLGAVAMGDIGKLFPDTDPAFKGADSRGLLREAWRRIAAKGYRIGNVDVTII 99 
                 79**********9889*********************************************************************************** PP

                 CSSSTCGGGHHHHHHHHHHHHTS-GGGEEEEEEETTTSHHHHTTSEEEEEEEEEE CS
        YgbB 100 aekpklapykeamrenlakllgleeeqvsvkattteklgfvGrgegiaalavvll 154
                 a++pk+ p+ ++mr n+a+ lg++ +qv+vkattteklgf+Grgegia+ av+ll
  EHT99272.1 100 AQAPKMLPHVPQMRINIAEDLGCHMDQVNVKATTTEKLGFTGRGEGIACEAVALL 154
                 ****************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1198.73
//
Query:       EHT99273.1  [L=238]
Description: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-80  269.5   0.0    2.6e-80  269.3   0.0    1.0  1  IspD          2-C-methyl-D-erythritol 4-phosphate cytidylyltr
    1.7e-15   57.8   2.0    2.3e-15   57.3   2.0    1.3  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.3   0.0   2.9e-84   2.6e-80       1     220 [.      10     230 ..      10     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 269.3 bits;  conditional E-value: 2.9e-84
                 EEEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG..CCEEEEE--SSHHHHHHHHHHTTSSTTSEEEE CS
        IspD   1 vvvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld..ksiqlvaGGdeRaesVlnglkalegeakfVLv 97 
                 v++v+pAAG G+Rm+a +pKq+l++  +tlleh+++ l +++av++++v++s+dd ++f+ l+l+  ++++ v GG++RaesVl+gl+a ++ a++VLv
  EHT99273.1  10 VIAVVPAAGIGSRMQATCPKQYLTIGQHTLLEHSIARLFSHPAVSQVIVALSPDD-NHFARLPLAsdPRVVRVTGGETRAESVLAGLQA-AQGAHWVLV 106
                 789****************************************************.9999998776799********************.7888***** PP

                 --TT-TT--HHHHHHHHHHHHTTCSEEEEEEE-SSEEEEEETTT.BEEEEETGTTEEEEEEEEEEEHHHHHHHHHHHHHCT---SSHHHHHHHTT--EE CS
        IspD  98 HDaARpllkaadiaellaaaeqstqgailalpvkDtikrveadg.lvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiGlsvk 195
                 HDaARp+l+++d+++ll+   +s++g ila+pv Dt+kr+e  + ++a+t++R+ Lw+a+tPq F+ +ll+a+++++ +ega itD+as++e++G +++
  EHT99273.1 107 HDAARPCLHPDDLDRLLQLPGKSKTGGILAAPVCDTMKRGEPGQsAIAHTVERDHLWHALTPQLFPHALLTACLTRALNEGAIITDEASALEYCGYHPE 205
                 *****************************************54369***************************************************** PP

                 EEE--TTG----SHHHHHHHHHHHH CS
        IspD 196 vVeGeednlKittpeDlalAeailr 220
                 +V G++dn+K+t+peDlalA ++l 
  EHT99273.1 206 LVTGRSDNIKVTRPEDLALAAFYLS 230
                 ***********************97 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   2.0   2.5e-19   2.3e-15       1     133 [.      12     154 ..      12     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.5e-19
                   EEEEEESS-TTTTT..THHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSHC.HHHHHH.TTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEE CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallplggkpllervldalraag.vdevvvvggde.evlaal.arlgvrvvededpgkgplaslaaalraaadadavlvl 92 
                   av+ A+G +sRm+   +K+ l +g+ +lle+++++l +++ v++v+v+  ++ +  a+l   ++ rvv+ +  g+  ++s++a+l+aa++a +vlv 
    EHT99273.1  12 AVVPAAGIGSRMQAtcPKQYLTIGQHTLLEHSIARLFSHPaVSQVIVALSPDdNHFARLpLASDPRVVRVT-GGETRAESVLAGLQAAQGAHWVLVH 107
                   6888********9889********************9996489****987751333333133456777776.58999******************** PP

                   ETT-TT--HHHHHHHHHCHHHHT......SSEEEEESSSEEEECCEE CS
  NTP_transf_3  93 acDmPlltpelverllaaaaasg......advvvptyegerghpllf 133
                    +  P+l p+ ++rll+   +s+      a v+    +ge+g+ +++
    EHT99273.1 108 DAARPCLHPDDLDRLLQLPGKSKtggilaAPVCDTMKRGEPGQSAIA 154
                   *****************874433323332223333333444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2054.88
//
Query:       EHT99274.1  [L=105]
Description: cell division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-29   99.3   0.7    2.3e-28   97.8   0.0    1.8  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   1.3e-32   2.3e-28       1      79 [.      11      89 ..      11      90 .. 0.98
   2 ?   -0.1   0.8     0.045     8e+02      29      41 ..      91     103 ..      88     105 .] 0.57

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.3e-32
                XXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DivIC  1 llllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgEtvyrvve 79
                ll++++++l++gk+g++++ ++  ++a ++a++aklk +n++L ae++dL+ + ++ieerARselg++kpgEt+yr+v+
  EHT99274.1 11 LLGWLQYSLWLGKNGIHDFTRVSDDVAVQKATNAKLKMRNDQLFAEIDDLNGGSEAIEERARSELGMIKPGETFYRLVP 89
                799***********************************************99************************996 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHH CS
       DivIC  29 lqaelaklkaene 41 
                 +++ +a++ a+n+
  EHT99274.1  91 QNKRNAQQAAQNQ 103
                 5555566655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 953.99
//
Query:       EHT99275.1  [L=106]
Description: hypothetical protein CKS_1280 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-43  145.4   7.5    5.6e-43  145.3   7.5    1.0  1  DUF3561   Protein of unknown function (DUF3561)


Domain annotation for each model (and alignments):
>> DUF3561  Protein of unknown function (DUF3561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   7.5   3.1e-47   5.6e-43       1     106 [.       1     104 [.       1     105 [. 0.95

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 3.1e-47
     DUF3561   1 mrnatnltlskadka.eeedeptyslsGavvGfvsyllalaiPfllyGsntlffllytWPfflallPvsvlvGvalsvllrgkllysilatllavvllf 98 
                 m+n+t++   +a+k+ ++ dep+++l+G+++Gfv+y++alaiPfllyGs+tlff+lytWPfflal+Pvsvl+G++ls++lrg+ +++ l++++av+l+f
  EHT99275.1   1 MQNITPM---LARKDsRTPDEPRSVLPGGIIGFVCYWCALAIPFLLYGSSTLFFFLYTWPFFLALFPVSVLTGMVLSTWLRGQWIWTSLICVIAVALQF 96 
                 8999999...555554999******************************************************************************** PP

     DUF3561  99 wllflfls 106
                 w+lflfls
  EHT99275.1  97 WILFLFLS 104
                 ******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 867.89
//
Query:       EHT99276.1  [L=201]
Description: adenosine 5'-phosphosulfate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-74  246.8   0.0      1e-73  246.4   0.0    1.1  1  APS_kinase    Adenylylsulphate kinase
    9.2e-08   32.4   0.0    1.6e-07   31.6   0.0    1.4  1  AAA_33        AAA domain
    0.00027   21.5   0.0    0.00042   20.9   0.0    1.4  1  AAA_18        AAA domain
    0.00073   19.6   0.0     0.0012   18.8   0.0    1.4  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0031   17.0   0.0     0.0043   16.5   0.0    1.2  1  KTI12         Chromatin associated protein KTI12
     0.0052   17.2   0.3     0.0073   16.7   0.3    1.6  1  AAA_16        AAA ATPase domain
      0.006   16.3   0.0      0.011   15.4   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.015   14.7   0.0    1.2  1  ParA          NUBPL iron-transfer P-loop NTPase
      0.012   15.3   0.2      0.042   13.6   0.0    1.9  2  PRK           Phosphoribulokinase / Uridine kinase family
      0.024   14.3   0.0      0.032   13.8   0.0    1.2  1  SRP54         SRP54-type protein, GTPase domain
      0.031   14.0   0.0      0.043   13.5   0.0    1.3  1  AAA_30        AAA domain
      0.033   14.3   0.0      0.058   13.5   0.0    1.3  1  Torsin        Torsin
      0.033   13.5   0.0      0.096   12.0   0.0    1.8  1  Zeta_toxin    Zeta toxin
      0.056   13.3   1.0       0.64    9.8   1.0    2.1  1  CPT           Chloramphenicol phosphotransferase-like protein
      0.064   13.5   0.0      0.099   12.9   0.0    1.4  1  AAA_22        AAA domain
      0.083   13.4   0.0       0.12   12.9   0.0    1.3  1  ABC_tran      ABC transporter
      0.089   13.2   0.0       0.14   12.6   0.0    1.5  1  AAA_17        AAA domain
       0.11   11.5   0.0       0.17   10.9   0.0    1.2  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.15   11.8   0.1        0.3   10.8   0.1    1.4  1  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.25   11.8   0.0       0.44   10.9   0.0    1.4  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.0   1.1e-76     1e-73       1     154 [.      27     179 ..      27     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 1.1e-76
                 S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCH CS
  APS_kinase   1 rgvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleea 99 
                 +gvv+w+tGlsgsGKst+a ale++L++ g+s+ylLdGdnvRhgL++dLgfs++dRkenirrv+evakl++d+gl+vl+afisP+r+eR+++r+ll+e+
  EHT99276.1  27 QGVVLWFTGLSGSGKSTVAGALEQALHRIGVSTYLLDGDNVRHGLCRDLGFSDADRKENIRRVGEVAKLMVDTGLVVLTAFISPHRAERQMVRDLLDEG 125
                 699**********************************************************************************************97 PP

                 TEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETT CS
  APS_kinase 100 lkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenpelvvdtd 154
                  +fiev+vdtpl+vce+rDpkglYkkar+Ge+++ftGids YeaPe+pe++++ +
  EHT99276.1 126 -RFIEVYVDTPLAVCEARDPKGLYKKARAGELRNFTGIDSVYEAPEQPEIRLNGE 179
                 .**************************************************9865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.7e-10   1.6e-07       1     115 [.      30     143 ..      30     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.7e-10
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnls.r.rerarflkla 92 
                 ++++ Gl+GsGKst+a  l ++l+     ++ll+ d++r  l+ +   s+ d+++   +++ ++ e+a+  +    ++++   ++s + +er+ ++ l+
  EHT99276.1  30 VLWFTGLSGSGKSTVAGALEQALHrigvsTYLLDGDNVRHGLCRDLGFSDADRKE---NIR-RVGEVAK-LMVD-TGLVVLTAFISpHrAERQMVRDLL 122
                 7899***************************************988888766444...444.5557773.3333.444444556662336777777777 PP

      AAA_33  93 rrlgvpvrivvvetdeetlkeRl 115
                    g ++  v+v+t+ +++++R 
  EHT99276.1 123 D-EG-RFIEVYVDTPLAVCEARD 143
                 6.56.8999***********996 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.6e-07   0.00042       3      91 ..      33     116 ..      31     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.6e-07
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf....gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaa 91 
                  tG +G+GK+t+a +L++ l  +        +d+++++ +++  + +     +++++ ++ ++ +++          + +v+  +++ ++ e++
  EHT99276.1  33 FTGLSGSGKSTVAGALEQALhRIgvstYLLDGDNVRHGLCRDLGFSD---ADRKENIRRVGEVAKLMVDT-------GLVVLTAFISPHRAERQ 116
                 79**************9998555999977777777777777777777...56666666666666666665.......55677777777776655 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-06    0.0012       6     101 ..      35     122 ..      30     140 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-06
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.dlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeelk 101
                 + +G+GK+t+a +L +al r g  + l+D D+ +  l        d+   d++r +e ++++g++ +l ++   vvl+ + ++  ++++++++++l+
  EHT99276.1  35 GLSGSGKSTVAGALEQALHRIGVSTYLLDGDNVRHGLC------RDLGFsDADR-KENIRRVGEVAKLMVDTGLVVLTAFISP--HRAERQMVRDLL 122
                 569**************************999944433......3333334444.4444444444333355588888999888..788888887776 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.8e-06    0.0043       6      58 ..      33      88 ..      29     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.8e-06
                EE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH....TTSSS--GGGHHHHHH CS
       KTI12  6 ltGlPssGKstrakeLakaleeekrsvvviddeslg...iekdsykdsakekalRs 58
                +tGl  sGKst+a  L++al+  + s +++d + ++   ++   + d+ + +++R 
  EHT99276.1 33 FTGLSGSGKSTVAGALEQALHRIGVSTYLLDGDNVRhglCRDLGFSDADRKENIRR 88
                8******************************9998866444444777777777774 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   8.1e-06    0.0073      19      63 ..      23      69 ..      16     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.1e-06
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekdggif..lrgkcdql 63
                 + +++ ++ ++G sG+GKs+++ +l +al + g+ +  l g+++++
  EHT99276.1 23 QHGHQGVVLWFTGLSGSGKSTVAGALEQALHRIGVSTylLDGDNVRH 69
                4556668899**************99998887753333366666555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05     0.011      21      44 ..      26      50 ..      15      54 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
      AAA_29 21 lkg.atlltGpsGsGKSTllDAiqa 44
                 +g +  +tG sGsGKST+  A+  
  EHT99276.1 26 HQGvVLWFTGLSGSGKSTVAGALEQ 50
                45767889**********9888765 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.7e-05     0.015       8      59 ..      32      83 ..      26     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
        ParA  8 vlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpe 59
                   g  G GKStva  l  aL++ g+++ llD D + + + r lg ++++ +
  EHT99276.1 32 WFTGLSGSGKSTVAGALEQALHRIGVSTYLLDGDNVRHGLCRDLGFSDADRK 83
                5667789***************************988888888888776444 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.6e-05     0.042       5      36 ..      34      65 ..      30      88 .. 0.85
   2 ?   -0.8   0.0       1.2   1.1e+03     125     141 ..     115     137 ..      77     143 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.6e-05
         PRK  5 agsSGaGkttvarklekifgrekvkaaeiegd 36
                +g SG+Gk+tva +le+++ r +v +   +gd
  EHT99276.1 34 TGLSGSGKSTVAGALEQALHRIGVSTYLLDGD 65
                899*****************999986655555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
         PRK 125 r..vaelld....lkiyvdisid 141
                 r  v++lld    +++yvd+   
  EHT99276.1 115 RqmVRDLLDegrfIEVYVDTPLA 137
                 24455555544444555555444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.6e-05     0.032       3      43 ..      30      70 ..      28      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTT CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaa 43
                v+ + Gl G+GK t ++ L + l++ g ++ l   D  R +
  EHT99276.1 30 VLWFTGLSGSGKSTVAGALEQALHRIGVSTYLLDGDNVRHG 70
                67899**********************************88 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.8e-05     0.043       9      48 ..      19      58 ..      17     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
      AAA_30  9 avealltsgdrvavltGpAGtGKttalkalreaweaaggr 48
                a e+ ++++  v   tG  G+GK+t+ +al++a+++ g +
  EHT99276.1 19 AREQQHGHQGVVLWFTGLSGSGKSTVAGALEQALHRIGVS 58
                556667777889999******************9988855 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.4e-05     0.058      47      83 ..      22      58 ..      15      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-05
                -SS-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTTGGG CS
      Torsin 47 nekpkkpLvlsfhGwtGtGknfvaeiiaenlyrdGlr 83
                +++ ++ +vl f G +G+Gk+ va  + ++l+r G+ 
  EHT99276.1 22 QQHGHQGVVLWFTGLSGSGKSTVAGALEQALHRIGVS 58
                56788899*************************9985 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011     0.096      13      72 ..      25      85 ..      14     134 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Zeta_toxin 13 qerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilkadpkka 72
                + + +++   G +G+GKs++a +l+++l+  + +   ld+D++R    +  +  +ad k++
  EHT99276.1 25 GHQGVVLWFTGLSGSGKSTVAGALEQALHrIGVSTYLLDGDNVRHGLCRDLGFSDADRKEN 85
                466677788999****************855667778999999976555555555555555 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00071      0.64       5     127 ..      32     143 ..      28     153 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00071
                 EEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHH CS
         CPT   5 lLnGgsssGKsslaralqevldepwlhlgvDafvealppkrqdeadglefeteleeigpeldlllaalyeavaamaraGnnvivDdvilekewlvdllr 103
                    G s sGKs++a al + l      +gv +++    + r     +l f+      ++ ++  ++ + e  + m ++G+ v+    i  +++  +++r
  EHT99276.1  32 WFTGLSGSGKSTVAGALEQAL----HRIGVSTYLLDGDNVRHGLCRDLGFS------DADRKENIRRVGEVAKLMVDTGLVVLTA-FISPHRAERQMVR 119
                 467899999999999987665....46888888875555555555555555......4555555666677778899999866555.55555668999** PP

                 HHHTTS-EEEEEEE--HHHHHHHH CS
         CPT 104 rllsgldvllVGvrcplevlerRe 127
                 +ll + +++ V v  pl+v e+R+
  EHT99276.1 120 DLLDEGRFIEVYVDTPLAVCEARD 143
                 ********************9997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.099       8      60 ..      31      75 ..      23     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrel 60
                l  tG sG+GK+t++  l + l+        r +v ++ l +++ +  l+r+l
  EHT99276.1 31 LWFTGLSGSGKSTVAGALEQALH--------RIGVSTYLLDGDNVRHGLCRDL 75
                5679*****************96........7777777777777666666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013      0.12      10      37 ..      27      54 ..      24     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
                TTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkp 37
                +g ++ ++G +G+GKSt++ +l + l+ 
  EHT99276.1 27 QGVVLWFTGLSGSGKSTVAGALEQALHR 54
                6778899************999887765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00016      0.14       1      52 [.      34      92 ..      34     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
                EE-TTSSHHHHHHHHHHHH...T.EEEEEHHHHHH.HHHHTTTS..HSSHHHHCTSHHH CS
      AAA_17  1 lGgPGsGKgtqceklveky...g.fthlsaGdllr.eeakrggl..akardemrklple 52
                +G+ GsGK+t++  l + +   g  t+l  Gd +r   +++ g   a+ ++++r++ ++
  EHT99276.1 34 TGLSGSGKSTVAGALEQALhriGvSTYLLDGDNVRhGLCRDLGFsdADRKENIRRVGEV 92
                69*************99884443134445599999445555565334445556665554 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.17      29      58 ..      28      57 ..      14      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
                SEEEEEEE-TTSSHHHHHHHHHHHHHCTT- CS
        MeaB 29 aqvvGltGvPGaGkstlvealglelrrrGk 58
                  v+ +tG+ G+Gkst+  al + l r G 
  EHT99276.1 28 GVVLWFTGLSGSGKSTVAGALEQALHRIGV 57
                467889******************999885 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00033       0.3       2      29 ..      34      61 ..      33      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
  ATP_bind_1  2 vGpaGsGKttfvgalseilelrgrsvav 29
                +G  GsGK+t  gal + l+ +g s ++
  EHT99276.1 34 TGLSGSGKSTVAGALEQALHRIGVSTYL 61
                799*****************99988776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00049      0.44       1      23 [.      31      53 ..      31      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  +w++G sg GKSt+a  L +al 
    EHT99276.1 31 LWFTGLSGSGKSTVAGALEQALH 53
                  6***************9888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 1710.27
//
Query:       EHT99277.1  [L=475]
Description: sulfate adenylyltransferase, subunit 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-43  146.1   0.0    1.2e-42  145.7   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    9.7e-07   28.9   0.0    1.6e-05   24.9   0.0    2.3  1  MMR_HSR1     50S ribosome-binding GTPase
    1.1e-06   28.9   0.2    2.8e-06   27.6   0.2    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.88    9.0   0.0    2.3  2  SRPRB        Signal recognition particle receptor beta subuni
      0.014   14.9   0.0      0.073   12.6   0.0    2.2  2  FeoB_N       Ferrous iron transport protein B
      0.018   15.2   0.0        7.3    6.8   0.0    2.5  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.045   13.6   1.3        8.9    6.2   0.1    2.7  2  RsgA_GTPase  RsgA GTPase
       0.19   11.3   0.5       0.98    9.0   0.5    2.1  1  cobW         CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.0   5.3e-46   1.2e-42       3     187 ..      27     231 ..      25     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 5.3e-46
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH...HHHST..............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka...eeerv..............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFs 84 
                 ++ + ++g vD GK+TL++rLl++t +i +++      +  +               +D l++Ere+giTi++a  +++  t+k+++ + DtPGH++++
  EHT99277.1  27 LLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSlqsD--SKrhgtqgekldlallVDGLQAEREQGITIDVAYRYFS--TEKRKFIIADTPGHEQYT 121
                 67899*************************999887532..22468999******************************..****************** PP

                 HHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST..HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBT CS
    GTP_EFTU  85 kevirglrvlDgavlvvdaveGvepqteevlrlalkegvp.iivfiNKmDrl..kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgeg 180
                 +++ +g++++D+a+l++da++ v  qt+++  +   +g++ ++v+iNKmD +  ++++ e++++ + ++        + + +   ++ +v++Sal+ge+
  EHT99277.1 122 RNMATGASTCDLAILLIDARKCVLDQTRRHSFISTLLGIKhLVVAINKMDLVdyQQSVFEQIKQDYLDF------AGQLPDD--LDIRFVPMSALEGEN 212
                 ****************************************************66333333333333355......4444544..48************9 PP

                 HH............HHHHH CS
    GTP_EFTU 181 vk............tllea 187
                 v             tll++
  EHT99277.1 213 VAsqsqsmpwytgpTLLDV 231
                 9877777777777744444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.2e-09   1.6e-05       5      93 ..      33     148 ..      29     169 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.2e-09
                 EESTTSSHHHHHHHHHT.................................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   5 vGrpNvGKStLinaltg.................................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaf 70 
                  G    GKStLi +l+                                  +  ++++++g T+d+ ++ +++++++++++DtpG  e      + ++++
  EHT99277.1  33 CGSVDDGKSTLIGRLLHdtrqiyedqlsslqsdskrhgtqgekldlallvDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPG-HE------QYTRNM 124
                 5778889*******99444445555555555555666666676766555446799999************9999**********.44......566666 PP

                 HHHHC.TSEEEEEEETTTTCSHHH CS
    MMR_HSR1  71 lalee.adlillvvdaseeklkpl 93 
                 +   + +dl++l++da++  l++ 
  EHT99277.1 125 ATGAStCDLAILLIDARKCVLDQT 148
                 6544449********983323222 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.2   1.2e-09   2.8e-06       6      72 ..     265     323 ..     263     325 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.2e-09
                  EEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCE CS
  GTP_EFTU_D2   6 grvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdt 72 
                  g++ sGt+k+G++v++  ++++ +   +++ ++ tf +d++ea ag+++ + ++     d i +Gd 
   EHT99277.1 265 GTLASGTVKVGQRVKV--LPSGVE---STVARIVTFDGDLQEAGAGEAITLVLND--EID-ISRGDL 323
                  6788************..556566...9*******************99988873..444.667765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.016        36       5      41 ..      29      67 ..      25      84 .. 0.66
   2 ?    9.0   0.0   0.00039      0.88      35      69 ..      93     127 ..      77     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.016
                EEEEE-STTSSHHHHHHHHHHS..S---B---SS-EEET CS
       SRPRB  5 avllvGlsdsGKTslftrLttd..svkktvtSqessaal 41
                ++l  G  d GK +l+ rL+ d  ++ + + S  +s ++
  EHT99277.1 29 RFLTCGSVDDGKSTLIGRLLHDtrQIYEDQLSSLQSDSK 67
                68899***************9955344445544333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00039
                 SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHH CS
       SRPRB  35 qessaalkvksekgskltliDfPGheklrqkllek 69 
                 +   +a+++ s+++ k+ ++D PGhe+   ++ + 
  EHT99277.1  93 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATG 127
                 5567899********************99888765 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   3.2e+03       5      22 ..      32      49 ..      29      54 .. 0.76
   2 ?   12.6   0.0   3.2e-05     0.073      32     150 ..      92     214 ..      90     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
                EEESTTSSHHHHHHHHHT CS
      FeoB_N  5 lvGnpnvGkttlfnaltg 22
                ++G  + Gk+tl+ +l  
  EHT99277.1 32 TCGSVDDGKSTLIGRLLH 49
                5788889*****998865 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.2e-05
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGH....HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTE.. CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnl....ernLyLtlqllelgvpvvlalnmideaekkgi.. 123
                 G+t++ +  +++++++++ i D PG          e+ +r++ +  ++ d+ + ++da +      r   ++  ll ++ ++v+a+n++d ++ ++   
  EHT99277.1  92 GITIDVAYRYFSTEKRKFIIADTPGH---------EQYTRNMATgASTCDLAILLIDARKCvldqTRRHSFISTLLGIK-HLVVAINKMDLVDYQQSvf 180
                 99***********************6.........55555555435567777777777653222257777888888875.6899******998876411 PP

                 .EE-HH......HHHHHHTS-EEEEBTTTTBTHH CS
      FeoB_N 124 .eidlk......kLsekLgvpvvktsakkkegie 150
                  +i ++      +L + L++  v++sa ++e++ 
  EHT99277.1 181 eQIKQDyldfagQLPDDLDIRFVPMSALEGENVA 214
                 1333221122226788899999999999999886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0033       7.3       3      40 ..      31      68 ..      29      82 .. 0.79
   2 ?    6.1   0.0    0.0056        13      53     119 ..     104     171 ..      78     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0033
                EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE CS
         Roc  3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltke 40
                + +G    GK++l+ r+++d+ +  e++  +++  +k+
  EHT99277.1 31 LTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLQSDSKR 68
                67899999*************99888777777666654 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0056
                 TTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH.HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  53 vkkvklniWDtaGqerfrslhplylreaalailvydsrss.enlkeWlkelkkvagkspvilvgnkiD 119
                 ++k k+ i Dt G+e++   +    +  +lail++d+r+   +  +  + +++  g + +++ +nk+D
  EHT99277.1 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKCvLDQTRRHSFISTLLGIKHLVVAINKMD 171
                 234579999***************************88642455667777888888888899999998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0071        16     105     162 ..      33     118 ..      10     123 .. 0.70
   2 ?    6.2   0.1     0.004       8.9      45      72 ..     158     187 ..     124     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0071
                  ECSTTSSHHHHHHHHCTT...........................-----S--------------SEEEEEETT.TEEEESS-SSS CS
  RsgA_GTPase 105 vGqSGvGKStLinallpe...........................lelktgevseklgrGkhTTtavellelae.gglliDtPGfr 162
                  +G+   GKStLi +ll +                           l l +  ++++ ++G     a + ++ ++ + +++DtPG +
   EHT99277.1  33 CGSVDDGKSTLIGRLLHDtrqiyedqlsslqsdskrhgtqgekldLALLVDGLQAEREQGITIDVAYRYFSTEKrKFIIADTPGHE 118
                  6777779******9999866676666666666666666666666666666666666666666666666666665344556777765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.004
                  TT-.EEEEEEE-GGG--HHH.HHHHHHHHH CS
  RsgA_GTPase  45 kgi.epvivlnKiDlleeee.eleelkeel 72 
                   gi ++v+++nK+Dl++ ++  +e++k+++
   EHT99277.1 158 LGIkHLVVAINKMDLVDYQQsVFEQIKQDY 187
                  556478999********9996677777777 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.5   0.00044      0.98     106     165 ..     125     186 ..      30     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00044
                 HHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC...HHHHHHH CS
        cobW 106 lksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldee.allekleer 165
                  + + t d  + ++Da+++  ++++ ++ +   l    l+v +nK+Dl+d++    e+++++
  EHT99277.1 125 ATGASTCDLAILLIDARKCVLDQTRRHSFISTLLGIKHLVVaINKMDLVDYQqSVFEQIKQD 186
                 455778999*********9888999999999999998887769********95555666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3712.71
//
Query:       EHT99278.1  [L=302]
Description: sulfate adenylyltransferase, subunit 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-65  218.5   0.0    7.1e-65  218.3   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.0     4e-69   7.1e-65       1     174 []      29     257 ..      29     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 4e-69
                  CEEEE--SSCTCHHHHHHHHHHCTTH....EEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHHHH CS
  PAPS_reduct   1 elvvsvsgGkdslVllhLalkafkpv....pvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyeeaaeriaKveplkka 94 
                  ++v+ +s+Gkds+V+lhLa+kaf+p+    p+++vdtg++f+e++ef+d++++ +g +l v++++e+va +in++ hgs+++++    i+K+e lk+a
   EHT99278.1  29 NPVMMYSIGKDSSVMLHLARKAFYPGtlpfPLLHVDTGWKFREMYEFRDRTVKAMGAELLVHRNPEGVAMGINPFVHGSAKHTD----IMKTEGLKQA 122
                  689**********************77777******************************************************....********** PP

                  HHCTTECEEE----CCCTTTTTTSSSEEECTTT-S......................CEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT........ CS
  PAPS_reduct  95 LekldedalltGaRrdesksraklpiveidedfek......................slrvfPllnWteedvwqyilrenipynpLydqg........ 162
                  L+k+++da+++GaRrde+ksrak++i++++++f++                      s+rvfPl+nWte d+wqyi  eni+++pLy ++        
   EHT99278.1 123 LNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRwdpknqrpelwhnyngqinkgeSIRVFPLSNWTELDIWQYIFLENIEIVPLYLAAprpvlerd 220
                  ************************************************************************************************** PP

                  .........................-SS--BCTTB-S CS
  PAPS_reduct 163 .........................frsiGcvpctga 174
                                           fr++Gc+p+tga
   EHT99278.1 221 gmlmmidddrinlqpgevikqrmvrFRTLGCWPLTGA 257
                  **********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2175.36
//
Query:       EHT99279.1  [L=471]
Description: siroheme synthase / precorrin-2 oxidase / sirohydrochlorin ferrochelatase / uroporphyrinogen-III methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-49  168.5   0.7    3.1e-49  167.8   0.7    1.4  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
    8.8e-30  103.2   0.0    2.8e-29  101.6   0.0    1.9  2  NAD_binding_7   Putative NAD(P)-binding
    3.7e-21   74.6   2.9    1.1e-20   73.1   2.9    1.9  1  CysG_dimeriser  Sirohaem synthase dimerisation region
    1.1e-07   31.2   0.1    2.6e-07   30.0   0.1    1.7  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
     0.0062   16.9   0.0       0.17   12.2   0.0    2.6  2  Radical_SAM     Radical SAM superfamily
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.33   11.0   0.0    1.9  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.17   12.0   0.0       0.51   10.4   0.0    1.8  2  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   0.7   1.2e-52   3.1e-49       2     212 ..     217     426 ..     216     427 .. 0.90

  Alignments for each domain:
  == domain 1  score: 167.8 bits;  conditional E-value: 1.2e-52
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgs 97 
                   ++lVG+GpGd  llT+r+l++++ advvl+d  +++e +ldl+++++  +    gk+++ +   ++ei++ +++++++gk+Vv+l++GDP+++g+g+
    EHT99279.1 217 IILVGAGPGDSGLLTLRGLQVMQLADVVLYDH-LVSEEVLDLVRRDAdRICV--GKRASAHLLPQDEINQLMVQLAQKGKRVVRLKGGDPFIFGRGG 310
                   89***************************999.**********997433333..3334566667********************************* PP

  TP_methylase  98 elvealrareagieveviPGvsslqaaaarlgiplteggevlsvl......lpglakeeereleallangdtlvllkaprklaelaelLkea.lydd 187
                   e+++a+++  agi+++v+PGv+++  a a++giplt+++ ++svl      +p+++   + ++  l+ +++tl+++++  k+ae+ ++L+ + + + 
    EHT99279.1 311 EELQAAQQ--AGIPFQVVPGVTAAAGATAYAGIPLTHRDYAQSVLfitghcRPDSD---DIDWPSLARARQTLAIYMGAMKAAEISRQLILHgRAA- 401
                   ********..*************************************876655544...566777777799*********************6666. PP

  TP_methylase 188 ttpvavveragtedervvrgtleel 212
                    tpvav+ r+++ d++v +gtle+l
    EHT99279.1 402 STPVAVIGRGTRSDQQVLTGTLEHL 426
                   66*********************98 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.1e-32   2.8e-29       1     104 []       6     115 ..       6     115 .. 0.93
   2 ?   -2.9   0.0       3.6   9.1e+03      31      82 ..     241     289 ..     219     296 .. 0.58

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.1e-32
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.....elvklaeeele.kdlegadlviaatddrelneriaeaakarrilvn 90 
                    lf dl g+ vlvvGgG++Aark++ l +aga++++ + e+++el+     +++++  + +e ++l++++lviaatdd++ln++++++a ar++lvn
     EHT99279.1   6 LFADLAGRPVLVVGGGDIAARKIELLRRAGARIQIASRELCPELQtlldeQQLEWLATAFEpAQLDKVFLVIAATDDNALNAQVYDEANARHKLVN 101
                    799************************************98888866666667788888955********************************** PP

  NAD_binding_7  91 vadkpelcdfifpa 104
                    v+d++++c+fifp+
     EHT99279.1 102 VVDDQPKCSFIFPS 115
                    *************7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.6
  NAD_binding_7  31 akvtvvapevkeeleelvklaeeelekdlegadlviaatddrelneriaeaa 82 
                    a+v++++      +ee ++l ++++++ + g        +++e+n+ ++++a
     EHT99279.1 241 ADVVLYDHL---VSEEVLDLVRRDADRICVGKRASAHLLPQDEINQLMVQLA 289
                    555555555...4455556666665555555444444445555555555555 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   2.9   4.1e-24   1.1e-20       1      58 []     150     207 ..     150     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 4.1e-24
                     THHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH CS
  CysG_dimeriser   1 slGrLAelagrlRdrVkarlpdvaaRRrFWerffdgpvaelvlaGdeeeAealleqaL 58 
                     +lG++A+lag++Rd+Vkar++ +++RRr Wer+f+g++a++++ Gd e+A+a l+ +L
      EHT99279.1 150 HLGQMAQLAGQWRDKVKARFSRMSDRRRYWERIFNGRFASQMATGDVEAAKATLDSEL 207
                     79****************************************************9876 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1     1e-10   2.6e-07       1      26 [.     119     144 ..     119     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1e-10
  Sirohm_synth_M   1 rGpLQIaiSTnGksPrLAaliRreie 26 
                     r pL +aiS+ G +P+LA+++R+++e
      EHT99279.1 119 RSPLVVAISSSGTAPVLARMLREKLE 144
                     67999********************9 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.1   2.6e+02      74     133 ..     100     181 ..      11     186 .. 0.67
   2 !   12.2   0.0   6.7e-05      0.17      25      83 ..     272     326 ..     249     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.1
                  C..................CCTEEEEEEECSSCHG.....HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHH CS
                  x..................xxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  74 a..................vpgiritvetngtlpd.....eeklerllelgvdrvslgleaaddekvlklmnrghtfeevlea 133
                                      + + ++++++gt p      +ekle+ll+ ++ +++  +  + d+ v+ ++ r+ ++ +++e 
   EHT99279.1 100 VnvvddqpkcsfifpsivdRSPLVVAISSSGTAPVlarmlREKLETLLPSHLGQMAQLAGQWRDK-VKARFSRMSDRRRYWER 181
                  24444444444444444444667788889999988888888888888888877777766677776.66666666666666665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.7e-05
                  HHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  25 rgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritve 83 
                   ++ l+++ei +++ +l a kg+++v l gg+p+   +  e+l ++ +    gi + v+
   EHT99279.1 272 SAHLLPQDEINQLMVQL-AQKGKRVVRLKGGDPFIFGRGGEELQAAQQA---GIPFQVV 326
                  56889************.7999*********************999997...7776665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.33       7      55 ..       7      55 ..       4     104 .. 0.69
   2 ?   -3.7   0.1       4.5   1.2e+04      14      21 ..     216     223 ..     213     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                  HS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH.HHHHHHHHH CS
  Shikimate_DH  7 leslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl.erakelaee 55
                  + +l+++ vl++G G +a + ++ L ++g++ + +a R+l    ++l +e
    EHT99279.1  7 FADLAGRPVLVVGGGDIAARKIELLRRAGAR-IQIASRELcPELQTLLDE 55
                  6789999***********************9.*****9861233444433 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.5
                   EEEEES-S CS
  Shikimate_DH  14 kvlliGaG 21 
                   +++l+GaG
    EHT99279.1 216 EIILVGAG 223
                   68899998 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0002      0.51      21      80 ..      10      69 ..       7     101 .. 0.85
   2 ?   -2.7   0.0       2.2   5.5e+03       7      26 ..     252     271 ..     248     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
                   -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-S CS
  AdoHcyase_NAD 21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkad 80
                   laG+ ++v+G Gd+     + l+ +Gar+ ++  +    lq++++  ++  l ++ + a+
     EHT99279.1 10 LAGRPVLVVGGGDIAARKIELLRRAGARIQIASRELCPELQTLLDEQQLEWLATAFEPAQ 69
                   79******************************9999999*****9999988887776554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
                    CCCCHHHHHHH-S--TTSEE CS
  AdoHcyase_NAD   7 eslvdgikratdvllaGkva 26 
                    e ++d ++r +d +  Gk a
     EHT99279.1 252 EEVLDLVRRDADRICVGKRA 271
                    778999*******9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3683.61
//
Query:       EHT99280.1  [L=336]
Description: alkaline phosphatase isozyme conversion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-20   73.5   0.0    2.5e-20   73.0   0.0    1.2  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.4e-24   2.5e-20       2     186 ..      97     309 ..      96     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.4e-24
                    EEEEESTTCESEEEEEEEE--B-TTT.....TCC.....T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHH..HH CS
  Peptidase_M28   2 viatlegkatdevlllgAHyDsvgvg.....rgp.....ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafak..ak 85 
                    via  eg+a ++ +l+ A +D++                 ++G+dDnAsg +++Lela++l +  + +++gvrf++++a E  l G + +++  ++
     EHT99280.1  97 VIAAREGSA-PQEILVIASLDTWIPLsdneqA-RglgglRLQGVDDNASGLGVMLELAKQLSH--KPLHYGVRFVALSASESHLHGMDDYVArmSE 188
                    899******.888999999*****87876650.155778999********************9..346***********************98777 PP

                    CCCTTEEEEEEECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STT...HHHHTTT--EEEE............... CS
  Peptidase_M28  86 pelkkiaavlnlDmvgsggkellfesgdkssselekelkalakpvgraaaedpfdersgrgrsDh...spflkagvpvldl............... 163
                    +e+k++ +v++l  + +g+  ++ +sg ++ ++++k+++++a  ++r     +  +  +  ++D+    pf +ag+p ld+               
     EHT99280.1 189 KEKKNTLLVIDLNSLITGDHLYF-NSGMNTPRAVRKQTSERALLLARRFGISAASR--QLTKNDFhgvNPFDAAGFPLLDVtarnwnagskdgdqq 281
                    8**************99998888.9**************99998888653344444..44555542226999************************ PP

                    ....CTSSS-TTTTS.TTSSGGGB-HHH CS
  Peptidase_M28 164 ....aetgfpevyHt.prDtldnidkdt 186
                         + + ++++H+  rD+ld +d   
     EHT99280.1 282 rrrsRHFPDGTTWHQtDRDNLDFLDHWL 309
                    ***999999****961589999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2483.21
//
Query:       EHT99281.1  [L=94]
Description: hypothetical protein CKS_1287 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-10   40.3   0.0    3.7e-10   40.1   0.0    1.1  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.1e-14   3.7e-10       1      91 [.       1      79 [.       1      83 [. 0.95

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.1e-14
                EEEEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEEEEE CS
        YCII  1 MlyvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveerev 91
                M +v l y +p   e  +alla h+++l+++ ++G ++a+G+k +++          gG+++v+a  ++++  i+a+dPfv+  ++e+  v
  EHT99281.1  1 MYIVYLNYFRPI--EDVEALLAPHITWLDQHFNSGDFIAVGRKDPRT----------GGMIMVKAMPRARLDHILADDPFVAVAHYEVTNV 79
                788899999999..99******************************9..........*************************999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 838.48
//
Query:       EHT99282.1  [L=250]
Description: IclR family regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.7   0.0    1.9e-12   47.1   0.0    1.2  1  IclR      Bacterial transcriptional regulator
    1.7e-11   43.7   0.3    4.9e-11   42.3   0.1    1.9  2  HTH_IclR  IclR helix-turn-helix domain
    2.9e-06   27.0   0.0    1.1e-05   25.2   0.0    1.9  2  TrmB      Sugar-specific transcriptional regulator TrmB
    0.00031   20.6   0.2    0.00074   19.3   0.1    1.7  2  MarR_2    MarR family
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.026   14.6   0.1    1.5  1  HTH_20    Helix-turn-helix domain
      0.087   12.7   0.0       0.23   11.4   0.0    1.7  1  HTH_5     Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   6.3e-16   1.9e-12       5     127 ..     128     247 ..     125     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 6.3e-16
                 ETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEET CS
        IclR   5 avsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgpt 103
                 ++s iG ++p+  ta+G++lL++ ++e++ al+ + e  rl +  + d++++l ++ +   qGy+++++ +e  ++c+Aapi+ ++   vaA+  +  +
  EHT99282.1 128 ITSDIGVKIPIPWTATGRLLLSNWSDEAILALIPE-EDYRLANGNVLDKQAFLTDIHRAGHQGYSMTEGLSESFTCCMAAPIRARNDLAVAAICFM--V 223
                 6789********************99999999999.556788888999************************************999999998665..5 PP

                 TTSHHHHHHHHHHHHHHHHHHHHH CS
        IclR 104 arlteeelkeellalvreaArkis 127
                 +r t ee ++ ll+ +++a +k+s
  EHT99282.1 224 SRDTPEERRQMLLKTLINAGQKLS 247
                 677788888889********9998 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.1   1.6e-14   4.9e-11       2      51 ..      12      61 ..      11      62 .. 0.97
   2 ?   -3.3   0.0       2.7     8e+03      38      46 ..     235     243 ..     234     243 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.6e-14
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                +dR ++i ++l  a+q++  +el ++tg p+S+v+ l++ L   G+ve d
  EHT99282.1 12 VDRVIDIFRQLHIARQPMAMRELIEATGAPRSSVYELVNLLSDAGLVELD 61
                9***********************************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
                 HHHHHHHTT CS
    HTH_IclR  38 lLqtLvelG 46 
                 lL+tL++ G
  EHT99282.1 235 LLKTLINAG 243
                 899*99876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.8e-09   1.1e-05      19      57 ..      25      63 ..      16      77 .. 0.86
   2 ?   -1.6   0.0      0.89   2.7e+03      13      34 ..     113     134 ..     108     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.8e-09
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                +++p+ ++e+ e++g prs+vYe ++ L+d+GlVe   +
  EHT99282.1 25 ARQPMAMRELIEATGAPRSSVYELVNLLSDAGLVELDAE 63
                6889******************************97665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.89
                 HCHHHHHHCCCHHCHHCCCTTS CS
        TrmB  13 vYlaLlklgpatadeiaeelgv 34 
                  Y+++l++ +a   +i +++gv
  EHT99282.1 113 KYTVVLSESNAHPFKITSDIGV 134
                 5999999999999999999988 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.5e-07   0.00074      13      53 ..      23      60 ..      10      64 .. 0.93
   2 ?   -4.1   0.0       5.1   1.5e+04      17      28 ..     211     220 ..     208     221 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.5e-07
                HHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 13 aLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                +++r p   ++++el +++g ++s+v  +++ L++aGLve 
  EHT99282.1 23 HIARQP---MAMRELIEATGAPRSSVYELVNLLSDAGLVEL 60
                577887...9*****************************95 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.1
                 TTTSEEEHHHHH CS
      MarR_2  17 rpgrdltvgela 28 
                 r   dl+v++++
  EHT99282.1 211 RN--DLAVAAIC 220
                 33..48888887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   8.8e-06     0.026      14      60 ..      17      64 ..      15      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.8e-06
                HHHHHH.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20 14 rilraL.araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +i+r L   ++++   el e+ + ++++++  ++ L++agLve+  eg
  EHT99282.1 17 DIFRQLhIARQPMAMRELIEATGAPRSSVYELVNLLSDAGLVELDAEG 64
                79999988999********************************99887 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.7e-05      0.23      12      46 ..      25      59 ..      16      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.7e-05
                TTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 12 aegelcvcelaeelglsqstvShHLkkLreaGLVe 46
                a++++   el e++g ++s v +  + L +aGLVe
  EHT99282.1 25 ARQPMAMRELIEATGAPRSSVYELVNLLSDAGLVE 59
                679*******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2178.72
//
Query:       EHT99283.1  [L=130]
Description: endoribonuclease L-PSP [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-21   74.6   0.0    7.8e-21   74.3   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   4.3e-25   7.8e-21      10     118 ..      20     123 ..      16     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 4.3e-25
                    S-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE-S CS
  Ribonuc_L-PSP  10 pYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsaveVa 105
                    p+ +av+a++++y+sGq+ ++   ge+veg + eqtr a+en   ++++ag +++dvV+vt  l+d+  f  +n+v  e+f+++   Par +  V+
     EHT99283.1  20 PFARAVEADGWLYISGQTLMT--GGEVVEGGIIEQTRLAFENCLTIMREAGYQIKDVVHVTAVLTDARYFSSFNKVFSELFHDHP--PARIC-SVQ 110
                    7999**************998..7************************************************************5..99988.7** PP

                    BSGGG-SEEEEEE CS
  Ribonuc_L-PSP 106 aLpkgakvEIeai 118
                     L  + kvE++++
     EHT99283.1 111 DLVVDCKVEVDMT 123
                    **********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 991.96
//
Query:       EHT99284.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99284.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99284.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99284.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99284.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 845.79
//
Query:       EHT99285.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99285.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1013.09
//
Query:       EHT99286.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-97  325.7   3.5    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.5   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.1  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.5    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT99286.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99286.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99286.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99286.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99286.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99286.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99286.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99286.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99286.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99286.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99286.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99286.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99286.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99286.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99286.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT99286.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99286.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99286.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99286.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT99286.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99286.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99286.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT99286.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99286.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99286.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99286.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99286.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99286.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99286.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99286.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT99286.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99286.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99286.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1048  (0.0584528); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.38
# Mc/sec: 4130.03
//
Query:       EHT99287.1  [L=245]
Description: membrane component of an ABC superfamily polar amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-20   71.8  20.6    5.9e-20   71.8  20.6    1.5  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8  20.6   3.3e-24   5.9e-20       2     183 ..      34     214 ..      33     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.3e-24
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   + lG+laa    +r  ++++l+ +++++++ +P+++ ++++++ +  l+i  +++++++++l +  ++y   i+ra+++s+pk++ eaa +lG sr+
    EHT99287.1  34 LALGLLAAvakAARFAPVRWLSHGYVEFIRNTPVLLQIFIVFFGLPSLGITMSAFTAGVLALGINVGAYLAEIFRAGIQSVPKGQLEAAWILGISRR 130
                   679999999999************************9999998889999999********************************************* PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   q+f +vv+P+a++ + + ++++++ ll g++ll+ ++    l  l+ +a+ ++  ++ ++ ++ ++++++l l+ ++ +l ++  +r+
    EHT99287.1 131 QMFINVVMPQAARAVWPAIVNNLIQLLLGTSLLSAIA----LPELTGTATVINARTLLYIQTFSVVALVYLFLSNLFSWLGTVAGRRL 214
                   *************************************....99999999999999999999*********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1820.57
//
Query:       EHT99288.1  [L=213]
Description: membrane component of an ABC superfamily polar amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-20   71.2   9.8    9.2e-20   71.2   9.8    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   2.7    0.0021        38      26      60 ..       5      39 ..       4      40 .. 0.85
   2 !   71.2   9.8   5.1e-24   9.2e-20       2     174 ..      31     203 ..      30     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0021
  BPD_transp_1 26 vllslPsfvlaillvlvfvilsilghlilpviill 60
                  +l+slP ++ +++++l++++  i+g++ l++++++
    EHT99288.1  5 ILSSLPLLWRGLIITLLLSVAAIVGSTLLGLLAAV 39
                  789******99998888899999999999988775 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 5.1e-24
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   +llG+laa   ++r  + +++  +++++++++P+++ ++++++ ++ +++  +l+ ++i+ l +++++y+  i+r++++++pk+++e++ +lG+sr+
    EHT99288.1  31 TLLGLLAAvlrTSRLPVARQIAVIYTELFRGTPVLITLMFIYFGVAYFGYDINLFAAGILGLSIYQGAYIAEIFRGGIEAVPKGQWEVSWILGLSRR 127
                   689******999999*************************997667777777788889*************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.nggvlalviavlllnlvadi 174
                   q+f  v+lP++   +++ l+ +  +l++++++++++g    ++ l+ + + + d       ++ l+++++++l+  ++++
    EHT99288.1 128 QTFTSVILPQTRGIVLPPLVGQYLSLIKDTSIVSMIG----MSELMHQGQAIVDRIGQPvLIYGLVALLYFALCYPLSRW 203
                   *************************************....999999999999998444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1694.78
//
Query:       EHT99289.1  [L=210]
Description: glutamine transport ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-35  121.2   0.0    5.3e-35  120.9   0.0    1.1  1  ABC_tran      ABC transporter
      6e-10   39.4   0.0    0.00025   21.0   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.3e-08   33.8   0.0    8.1e-08   32.0   0.0    1.7  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00023   21.1   0.0    0.00032   20.7   0.0    1.2  1  Rad17         Rad17 P-loop domain
    0.00062   19.5   0.1     0.0012   18.6   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
    0.00075   19.7   0.6       0.01   16.1   0.6    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0025   18.2   0.1     0.0032   17.9   0.1    1.4  1  AAA_16        AAA ATPase domain
     0.0036   17.2   0.2     0.0066   16.4   0.2    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0092   15.7   0.9      0.015   15.0   0.9    1.7  1  AAA_30        AAA domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.019   14.7   0.0    1.3  1  AAA_15        AAA ATPase domain
      0.014   15.7   0.1       0.05   13.9   0.0    1.8  2  AAA_22        AAA domain
      0.022   14.1   0.1      0.038   13.3   0.1    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.028   14.4   0.0       0.33   10.9   0.0    2.1  2  AAA_5         AAA domain (dynein-related subfamily)
      0.033   14.6   0.0        1.6    9.2   0.0    2.1  2  AAA           ATPase family associated with various cellular 
      0.033   14.4   0.6      0.064   13.4   0.6    1.7  1  AAA_33        AAA domain
      0.037   14.6   0.0      0.059   13.9   0.0    1.4  1  AAA_18        AAA domain
      0.048   13.9   0.5       0.14   12.4   0.2    1.9  2  AAA_28        AAA domain
      0.066   12.8   0.4       0.26   10.8   0.1    1.9  2  AAA_25        AAA domain
      0.089   11.9   0.0       0.12   11.5   0.0    1.2  1  G-alpha       G-protein alpha subunit
       0.23   11.2   0.0       0.39   10.4   0.0    1.3  1  VirE          Virulence-associated protein E


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   5.9e-38   5.3e-35       1     137 []      22     169 ..      22     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 5.9e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..............esdee 84 
                 lk++sl++++ge+++++G +G+GKSt+l++++gl+k + Gei+++g +l++ ++ +    ++g+++q+ +lfp++t+  n              e++++
  EHT99289.1  22 LKEISLDVSPGEVLVLIGASGSGKSTVLRIMSGLEKADGGEIWVNGIPLHDqKRSRDICGHVGMVFQQFNLFPHKTALGNvtlalikaqklsvaEANAR 120
                 799************************************************67778899*****************99999*****9999988888888 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   +al+++gl +    ++++ ps+LSgGq+qrva+aral+ +pk++++DE+t+
  EHT99289.1 121 GMAALERVGLAD----RAGHYPSQLSGGQQQRVAIARALAVQPKIMFFDEATS 169
                 888888888888....445667*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.8e-07   0.00025       2      25 ..      35      58 ..      34      79 .. 0.74
   2 !   16.8   0.0   5.3e-06    0.0047     234     297 ..     138     198 ..     104     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.8e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 vliG+ gsGKS++L+++++l  +
  EHT99289.1 35 LVLIGASGSGKSTVLRIMSGLEKA 58
                69*****************99554 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.3e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +++lS G+++  a++ al+ ++   ++ ++DE  + L+P+l+ +++e+++ l+r+g   +++TH
  EHT99289.1 138 PSQLSGGQQQRVAIARALAVQP---KIMFFDEATSALDPELVGEVMEVMRGLAREGMTMVVVTH 198
                 5789999999989999999988...9***********************999999999999999 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     9e-11   8.1e-08      19     199 ..      26     200 ..      11     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 9e-11
                 EEETTS.SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETT CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N  19 ilpfsk.sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seyking 115
                 +l++s+ ++ +++G+ GSGKs +l  +   L +++     +  ++ +  + +++++   ++v ++f++ +   + ++   +++  +++ ++ s  + n 
  EHT99289.1  26 SLDVSPgEVLVLIGASGSGKSTVLRIM-SGLEKADG---GEIWVNGIPLHDQKRSRDICGHVGMVFQQFNLF-PHKTALGNVTLALIKAQKlSVAEANA 119
                 445555146789***********9977.34444444...3334444433346777777889*****999886.66666667776666665548899999 PP

                 EEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislre 199
                 + +   e   l  +ag ++++LSgG+++ va+a  +A+q      ++++De  +aLD + v +v e+++    + + ++v++++ 
  EHT99289.1 120 RGMAALERVGLADRAGHYPSQLSGGQQQRVAIARALAVQPK----IMFFDEATSALDPELVGEVMEVMRGLAREgMTMVVVTHEM 200
                 999999*****************************998743....7789********************6555449999999976 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.6e-07   0.00032      32      94 ..      19      81 ..       3     127 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.6e-07
       Rad17 32 kewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgik.lrewlnpvslkepdnqksdfkg 94
                 + lk  +L+  + ++L++ G sG gkstv++++s     +  + w+n++ l++ +  + d+ g
  EHT99289.1 19 TQVLKEISLDVSPGEVLVLIGASGSGKSTVLRIMSGLEKADgGEIWVNGIPLHDQKRSR-DICG 81
                578899999999**********************976555415669***9988766544.3333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.3e-06    0.0012      16      39 ..      26      49 ..      20      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                ++++++ ++ +l+G+sGsGKST+l
  EHT99289.1 26 SLDVSPGEVLVLIGASGSGKSTVL 49
                5677877899************97 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   1.1e-05      0.01      62      89 ..     157     184 ..     136     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                  +++++f+DEA s lD+e + +++e+++
  EHT99289.1 157 VQPKIMFFDEATSALDPELVGEVMEVMR 184
                 24789********************987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.6e-06    0.0032      24      52 ..      31      80 ..      19     192 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.6e-06
      AAA_16 24 p.elvllsGesGvGKsslvrellralekd.....................g 52
                p e+++l+G+sG+GKs+++r     lek+                      
  EHT99289.1 31 PgEVLVLIGASGSGKSTVLRIMS-GLEKAdggeiwvngiplhdqkrsrdiC 80
                34899**************7666.566665554444444444444444441 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   7.3e-06    0.0066      83     128 ..      15      61 ..       2      67 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.3e-06
                  -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  83 saktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  s   ++ l+e++  ++  ++ vl+G SG GKSt++  + + +++  g
   EHT99289.1  15 SFGATQVLKEISLDVSPgEVLVLIGASGSGKSTVLRIMSGLEKADGG 61 
                  5555667778877777669****************998886666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.9   1.7e-05     0.015      16      51 ..      30      65 ..      20     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrvig 51
                s+  v vl G+ G+GK+t+l+ +  + +a+gg++ +
  EHT99289.1 30 SPGEVLVLIGASGSGKSTVLRIMSGLEKADGGEIWV 65
                566799*****************9999999988865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.1e-05     0.019      14      44 ..      22      53 ..      20      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileald 44
                lk++++d+s+  + vliG+ +sGKS++l+++ 
  EHT99289.1 22 LKEISLDVSPGeVLVLIGASGSGKSTVLRIMS 53
                688899999888****************9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.6e-05      0.05       6      24 ..      33      51 ..      28      88 .. 0.88
   2 ?   -0.5   0.0       1.5   1.4e+03      81     104 ..     150     172 ..      97     199 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.6e-05
      AAA_22  6 gilvvtGesGtGKTtllrr 24
                 +lv++G sG+GK+t+lr 
  EHT99289.1 33 EVLVLIGASGSGKSTVLRI 51
                689*************985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
      AAA_22  81 aleqalraravielliiDEaqh.lr 104
                 a+++al  +  ++++  DEa   l+
  EHT99289.1 150 AIARALAVQ--PKIMFFDEATSaLD 172
                 333333333..55888888887774 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.2e-05     0.038      32      59 ..      26      52 ..       8      54 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
                  EEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 32 vldlkkmashllvaGatgsGKStalntL 59
                   ld ++ +  l+++Ga+gsGKSt+l+ +
    EHT99289.1 26 SLDVSPGE-VLVLIGASGSGKSTVLRIM 52
                  44444444.56678***********976 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00037      0.33       2      22 ..      35      55 ..      34      91 .. 0.78
   2 ?    1.4   0.0      0.33     3e+02      64      89 ..     153     183 ..     129     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                ++L+G++G+gKs++ + ++ +
  EHT99289.1 35 LVLIGASGSGKSTVLRIMSGL 55
                68*************999876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.33
                 -....G-SEEEEESGGG--.HHHHHHHHHHH CS
       AAA_5  64 r....egeilvlDEverae.sevlnsLlsll 89 
                 r    +++i+++DE + a  +e +++++ ++
  EHT99289.1 153 RalavQPKIMFFDEATSALdPELVGEVMEVM 183
                 23346899******99998888888887665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.096        86       2      18 ..      36      52 ..      35      77 .. 0.90
   2 ?    9.2   0.0    0.0017       1.6      37      98 ..     127     188 ..      96     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.096
                EEESSTTSSHHHHHHHH CS
         AAA  2 llyGppGtGKTllakav 18
                +l+G  G GK+++ + +
  EHT99289.1 36 VLIGASGSGKSTVLRIM 52
                799*********99875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0017
                 S.........STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  37 k.........yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                           y ++ +   ++ ++ a++ a +p+i+f+DE+ +    +          +v + ++++ g+ +
  EHT99289.1 127 RvgladraghYPSQLSGGQQQRVAIARALAvQPKIMFFDEATSALDPE----------LVGEVMEVMRGLAR 188
                 14444444447777788888888888999999********99887666..........56666666666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   7.1e-05     0.064       1      19 [.      34      52 ..      34     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.1e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +++l+G++GsGKst+++ +
  EHT99289.1 34 VLVLIGASGSGKSTVLRIM 52
                789***********99854 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.5e-05     0.059       2      60 ..      36     106 ..      35     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.5e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf..............gvnlrdvakenglllevdpealdeskrldedkldkl 60 
                 +l G++G+GK+t+ +  s +++                 ++rd++ + g+++ +++    ++k +  +++ +l
  EHT99289.1  36 VLIGASGSGKSTVLRIMSGLEKAdggeiwvngiplhdQKRSRDICGHVGMVFQQFNL--FPHKTALGNVTLAL 106
                 689*************98776556777788888888888888999888888888888..66666555555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   0.00016      0.14       3      21 ..      36      56 ..      34     133 .. 0.81
   2 ?    0.0   0.0      0.99   8.9e+02      67      80 ..     153     166 ..      96     205 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_28  3 vitGgestGKTtlleaLa..a 21
                v++G++++GK+t+l+ ++  +
  EHT99289.1 36 VLIGASGSGKSTVLRIMSglE 56
                9*************9887551 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.99
      AAA_28  67 eaaaaankvlfcDr 80 
                  a a ++k++f+D 
  EHT99289.1 153 RALAVQPKIMFFDE 166
                 23346777777774 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00029      0.26      31      50 ..      30      49 ..      12      65 .. 0.88
   2 ?   -0.2   0.0      0.71   6.4e+02     102     148 ..     148     196 ..     111     199 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00029
      AAA_25 31 pagelallaGapgtGKttla 50
                  ge+ +l+Ga+g+GK+t++
  EHT99289.1 30 SPGEVLVLIGASGSGKSTVL 49
                459***************86 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.71
      AAA_25 102 rllvldlagveslpLfakdrggtl...ltadvdaleaaieevegvrlvvi 148
                 r+++  +  v++  +f++++ ++l   l ++v ++++ + + eg  +vv+
  EHT99289.1 148 RVAIARALAVQPKIMFFDEATSALdpeLVGEVMEVMRGLAR-EGMTMVVV 196
                 44444444444444555555555522222333333333333.55666664 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.12      26      47 ..      35      56 ..      12      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                EEEEESTTSSHHHHHHHHHHHC CS
     G-alpha 26 llllGqseSGKsTilkqlklly 47
                l+l+G+s+SGKsT+l+ +  l+
  EHT99289.1 35 LVLIGASGSGKSTVLRIMSGLE 56
                899************9988666 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00043      0.39      49      73 ..      29      53 ..       4      61 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
        VirE 49 iKfDfvlvLvGkqgsgKstfleklg 73
                +   +vlvL G+ gsgKst+l++++
  EHT99289.1 29 VSPGEVLVLIGASGSGKSTVLRIMS 53
                555689*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1473.72
//
Query:       EHT99290.1  [L=72]
Description: IS1330 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 577.53
//
Query:       EHT99291.1  [L=320]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-20   72.6   0.0    6.1e-20   71.8   0.0    1.3  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   3.4e-24   6.1e-20      31     209 ..      29     245 ..      15     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 3.4e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT99291.1  29 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 125
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT99291.1 126 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 221
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT99291.1 222 ErFGFGLRASYSRSAGRIQVLSLL 245
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2778.15
//
Query:       EHT99292.1  [L=51]
Description: ATP-binding component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 417.68
//
Query:       EHT99293.1  [L=423]
Description: D-serine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-14   54.4   0.0    4.3e-14   52.9   0.0    1.8  2  D-ser_dehydrat  Putative serine dehydratase domain
    2.6e-12   46.9   0.2    3.5e-12   46.4   0.2    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1     1e+04      40      60 ..     127     147 ..      89     153 .. 0.63
   2 !   52.9   0.0   4.8e-18   4.3e-14       1      95 [.     312     408 ..     312     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
                     -TTSEEEEB-..EE-SS-EEE CS
  D-ser_dehydrat  40 agleegwvvsvrrlsdEhgil 60 
                     + +  +w+ +++r    hg+l
      EHT99293.1 127 DPAGIRWIGEWQRQHPDHGFL 147
                     333367777777888888876 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 4.8e-18
                     -EEEEEEEEEEETTTTEEES--HHHH-S-S..S--BT-EEE-TTS..EEEEB-..EE-SS-EEEE--TT-GGGS-TT-EEEEE-S-HHHHHTT-S CS
  D-ser_dehydrat   1 AlavlatVvSrptarralvdaGskalslds..sgpgfgkvvagle..egwvvsvrrlsdEhgiltleeesaddlrvGdvvrlipnHaCptvnlhd 91 
                     Al+++ +V Srp+++ al+d G +++ +d+  + p + ++++g++  +g+++s+++++d+h++l+l+ +  ++l+ Gd v   ++H+C+++++++
      EHT99293.1 312 ALEIWGRVLSRPEPGLALLDFGRRDVPFDQdlPVPLWMRAADGSAprSGTHLSISEVNDQHAYLRLPAD--ESLQPGDLVGCGISHPCTAFDKWR 404
                     899**************************76444448888877768878888899***********844..8*********************** PP

                     EEEE CS
  D-ser_dehydrat  92 ayvv 95 
                     ++ +
      EHT99293.1 405 YLPL 408
                     9876 PP

>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.2   3.9e-16   3.5e-12       3     160 ..      54     219 ..      52     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 3.9e-16
                     HHHHHHHHHHHHHHS.CTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESCSTGGGHHHHHH.......TT CS
  Ala_racemase_N   3 ldalrhNlrrlrala.gpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvlegfspeelaalae.......yd 89 
                     ++al++Nl++l+a + ++g+ l a+ K+   +  + +++    +gga g+  at +  ++lr  gi++  l  e ++p  ++ + e       ++
      EHT99293.1  54 QAALENNLQQLAAFCrEKGVMLAAHGKTSMAPTILRRAVS---QGGAWGISAATPAQVRALRHFGIRNVFLANELVDPAGIRWIGEwqrqhpdHG 145
                     689************777999*******555544444444...478*******************9996666666*******999999999999* PP

                     EEEEESSHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSC.HHHHHHHHHHHHTTTEEEEEEE-S-SST....T CS
  Ala_racemase_N  90 ltvtvdsleqlealaaaareagkplrvhlkidtgmgRlGftp.eeleellealaalpglrleglmtHfasa....d 160
                     + + vdsl+ +  l++ +   ++ + v++++ + +gR G+++ ee+ +++e++a++++l+l+g+  + +      d
      EHT99293.1 146 FLCYVDSLAGITLLEENLG--DTAIAVLIEVSIPGGRTGCRTeEEVLRIAERIAQSRHLQLVGVAGYEGALgaarD 219
                     ******************7..9***********99******************************99988643332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3612.54
//
Query:       EHT99294.1  [L=243]
Description: 3'-phosphoadenosine 5'-phosphosulfate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-50  171.8   0.0    1.8e-50  171.4   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   9.9e-55   1.8e-50       2     173 ..      47     218 ..      46     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 9.9e-55
                  EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHC......HHHHHHTHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyee......aaeriaKveplkk 93 
                  +v+s s+G++++V lhL++++++++pv+  dtg+ fpet++f+del+++++l+lkv++ e + a+++++++   +l+e+      ++++i Kvep+++
   EHT99294.1  47 YVLSSSFGIQAAVSLHLVTRVQPDIPVILTDTGYLFPETYRFIDELADQLNLNLKVFRAETSPAWQEARYG---KLWEQgvegieQYNQINKVEPMNR 141
                  589********************************************************************...9*********************** PP

                  HHHCTTECEEE----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB- CS
  PAPS_reduct  94 aLekldedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctg 173
                  aLe l+++++++G+Rrd+s sra+lp++ +++    +++v+P+++W++++v+qy++++n++y+pL+d+g+ s+G++++t+
   EHT99294.1 142 ALETLGAQTWFAGLRRDQSGSRASLPVLGVQRG---VFKVLPIIDWDNRQVHQYLQTHNLKYHPLWDEGYLSVGDTHTTR 218
                  ********************************9...99***************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2061.80
//
Query:       EHT99295.1  [L=573]
Description: NAD(P)-binding heme-binding sulfite reductase beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-51  172.5   0.1    2.1e-45  154.1   0.1    2.2  2  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    1.8e-30  104.6   0.1    4.8e-15   55.2   0.0    2.5  2  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.1   2.3e-49   2.1e-45       2     157 ..     173     329 ..     172     331 .. 0.97
   2 !   16.5   0.0   5.2e-07    0.0046       7     144 ..     430     557 ..     425     559 .. 0.83

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 2.3e-49
                 SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsa 100
                 +a+ ++ +l+p++++++e++ D++++a++ e   ep++getylPrKfK+ v ++p+n+v+++anD++++++ +++k +gfn+lvGGgl+++hg+k+t+a
  EHT99295.1 173 WAKKLSEHLLPQTRAYTEIWWDQEKVATTDE---EPILGETYLPRKFKTTVVIPPHNDVDLHANDLNFIAIAENGKLVGFNLLVGGGLSIEHGNKATYA 268
                 678899**********************999...***************************************************************** PP

                 EE....EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHHHHCCTC CS
                 xx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 101 rl....gfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekveeelgk 157
                 r+    g+ p e++l+v+ a+v+++rd+g+r++rk+++ ky++er+Gv+ F+++ve++ g 
  EHT99295.1 269 RTasefGYFPVEKILDVAAAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKAEVEKRAGV 329
                 *********************************************************9886 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.2e-07
                 CCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSS.SS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   7 nvtlcpgaglceeallDttelakaiedelepeygetyl.PrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsarlgf 104
                 n ++c+++ +c+ a+ +++ +   +  ++e +++++ +   +    v+gcpn c+++    +glvg     ++  +n+ +GG+   t+  ++ +++   
  EHT99295.1 430 NSMACVAFPTCPLAMAEAERFLPSFVTRVEAIMHNHGVgEEHIVLRVTGCPNGCGRAMLAEVGLVGKAP--GR--YNLHIGGNRIGTR-IPRMYRE-N- 521
                 778999999999999999999999999999999999983568999**************9999998544..44..99*****865554.4555554.3. PP

                 EEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 105 vpeeevlevveaivevyrdhgdrknrkkeRlkylverlGv 144
                 ++e e+l++++++v  ++    ++ ++ e ++++v r G+
  EHT99295.1 522 ITEPEILATIDELVGRWA----KEREAAEGFGDFVIRAGI 557
                 55555*************....999999999999999986 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   1.7e-16   1.5e-12      10      68 ..      80     139 ..      72     140 .. 0.89
   2 !   55.2   0.0   5.3e-19   4.8e-15       4      68 ..     352     417 ..     349     418 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 1.7e-16
  NIR_SIR_ferr  10 ymvrlrvpnGritaeqlraladia.ekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                    m+r+r+p+G+it+ q+ a+ ++a ek   g irlT rQ++q+hg+ ++++++  + L+e
    EHT99295.1  80 MMLRCRLPGGIITPTQWLAIDKFAtEKTLYGSIRLTNRQTFQFHGILKKNVKPTHQMLHE 139
                   4***********************6666689*********************99998887 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 5.3e-19
  NIR_SIR_ferr   4 kdgkgyymvrlrvpnGri.tae...qlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                    d+k  ++++l+++nGr+ +     +++++a+ia+ ++ g++rlT++Qnl+++gvpe++ ++i+++++e
    EHT99295.1 352 IDNK--WHLTLFIENGRLlDYPgrpLKSGIAEIAKIHQ-GDFRLTANQNLIVAGVPESQKAQIEAIARE 417
                   5788..*************999****************.*************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.34
# Mc/sec: 5041.04
//
Query:       EHT99296.1  [L=600]
Description: sulfite reductase, alpha subunit, flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-31  107.4   0.6    1.9e-30  106.0   0.2    2.0  2  Flavodoxin_1   Flavodoxin
    5.3e-27   94.8   0.0    5.9e-26   91.4   0.0    2.1  1  FAD_binding_1  FAD binding domain
    1.5e-19   70.6   0.0    4.2e-19   69.2   0.0    1.8  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.2   3.1e-34   1.9e-30       2     137 ..      66     193 ..      65     198 .. 0.89
   2 ?   -3.0   0.0       1.3   7.8e+03       8      25 ..     307     324 ..     306     346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 3.1e-34
                   EEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEECT CS
  Flavodoxin_1   2 lYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGds 98 
                   l +S+tGn++ +A+ql+++l+++++++++v++ dy+  +++i +e+ll+vvtsT g+G+ppe++    +++l  k    +++++ g  fav+glGd+
    EHT99296.1  66 LSASQTGNARRVAEQLRDDLQAAKLTVNLVNAGDYK--FKQIGQEKLLIVVTSTQGEGEPPEEAV-ALHKFLMSK----KAPKMDGAAFAVLGLGDT 155
                   779*********************************..99*********************9988.555555555....7999************** PP

                   TSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHH CS
  Flavodoxin_1  99 ayenFcaagkkldekleelGaerllkllegdednqegqe 137
                   +ye F +agk +d++l elGaerll  + +d d  ++q+
    EHT99296.1 156 SYEFFSKAGKDFDTRLAELGAERLLDRVDADVDY-AEQA 193
                   *************************977777765.3443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                   SHHHHHHHHHHHHHHHTT CS
  Flavodoxin_1   8 GnteklAkqlaeelgehg 25 
                   G+t  lA++l++ ++   
    EHT99296.1 307 GQTLPLAEALQKHFELTV 324
                   788889999999998333 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   9.9e-30   5.9e-26       2     222 .]     231     425 ..     230     425 .. 0.90

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 9.9e-30
                    --BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   2 pfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    p +++++  a+++ n+++t  +s++ v h+e+d+ dsgl+Y++Gd+lgv+ +N+ +lV ellel+ l+   de+v+++                 l
     EHT99296.1 231 PYSKTQPLSASLSVNQKITGRDSDKDVRHIEIDLGDSGLRYQPGDALGVWYENDAALVSELLELVWLKG--DEPVDVQGQT------------LPL 312
                    77899****************************************************************..****998665............568 PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvh 193
                     +al+++ ++t        + +a++a+      +L  L+ d  + ++++ +  +++ +++++  +p ++l++e+L   l  L+pR YSi+ss+  +
     EHT99296.1 313 AEALQKHFELTVN----TAQIVAQYATLS-RNDELLSLVDD--KAKLQQYA--QRYPIVDMVRLAP-AQLTAEQLTGLLRPLTPRLYSIASSQAET 398
                    99*******9864....445678888764.56789999999..66666655..7889999999999.79*************************** PP

                    TTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 194 pdevhltvvVveyetdgegrirkGvcsny 222
                     +evh+tv  v +    egr+r G +s++
     EHT99296.1 399 DTEVHITVGAVRFDI--EGRQRGGGASTW 425
                    ********9999985..**********99 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0     7e-23   4.2e-19       1     108 [.     458     564 ..     458     565 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 7e-23
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HSST CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....lkke 91 
                    mi++GtGiaP+r++++++ ++    +k +l++Gn++   d+ly+ e++++ k    ++  +a+ sr++a+    k +vqd+++ + ++    + ++
     EHT99296.1 458 MIGPGTGIAPFRAFMQQRDND-GASGKNWLFFGNPHFTdDFLYQVEWQKYVKDGLLTHIDLAW-SRDQAE----KIYVQDKIRAKGAEvwrwI-QD 546
                    9*******************9.999**********9877***********4443334344444.565555....6*********999999955.9* PP

                    TEEEEEEC.SHHHHHHHH CS
  NAD_binding_1  92 ethvyvCG.ppgMikavr 108
                    ++h+yvCG + +M+++v+
     EHT99296.1 547 GAHLYVCGdANRMARDVE 564
                    ***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4287.89
//
Query:       EHT99297.1  [L=275]
Description: hypothetical protein CKS_1305 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-07   30.7   0.0    3.2e-06   27.1   0.0    2.0  2  Acetyltransf_2  N-acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_2  N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-10   3.2e-06       4     106 ..      32     140 ..      29     171 .. 0.83
   2 ?    1.4   0.0     0.012   2.2e+02     174     233 ..     201     259 ..     186     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.8e-10
                     HHHHHHHHHHHHS-EE-HH..HHTT....---.--SHHHHHHHHTTST--B-HHHHHHHHHHHHHHTT-EEEEEEEEEETTGGSSSSSSCEEEEE CS
  Acetyltransf_2   4 tLrellqahlraiPFENld..vllg....eei.eldlealfdklVkkkRGGyCyelNgLlarvLkelGFevtllagrvvvkaeeaastertHlll 91 
                      L++l +a  +++PF+ +   +l +    ++    ++++ f + ++   GG C    g l ++L +lGF+ +l ++r++ ++++   +   H ll
      EHT99297.1  32 GLQALYRAWCQKVPFDTIRrrILANdppsQPLpGTTADDFFTHWLQFGTGGTCWAGHGALFALLMQLGFRAQLGVSRMLSSRPSP-VDSPGHGLL 125
                     58899999999999999862244454443333468999*********************************************98.88899**** PP

                     EEEETTEEEEE-SSS CS
  Acetyltransf_2  92 lVtidgetylvDvGF 106
                     lVt+d++  +vD+  
      EHT99297.1 126 LVTLDDRPLVVDATM 140
                     ************975 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.012
                     HHSTT-HHHCS-EEEEEETTEEEEEETTEEEEEETTSEEEEEEE-SHHHHHHHHHHTT-- CS
  Acetyltransf_2 174 stspdsvftkkllcslatpdgrltLvgrtlterekdgaleeiklltdeeleevlkekFgi 233
                     ++  +s+f   ll+ +a ++    +v+ +  +r++dg +e ++ l++++ +++l e Fgi
      EHT99297.1 201 KSRNTSRFDGALLIRRAGHETLTGIVKGEQVVRAQDG-SESFTPLSQSQQHQLLIEHFGI 259
                     3345678888999999999988888888888887777.9999999999999*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2068.27
//
Query:       EHT99298.1  [L=119]
Description: queuosine biosynthesis, PTPS-I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-34  117.9   0.0    2.7e-34  117.8   0.0    1.0  1  PTPS      6-pyruvoyl tetrahydropterin synthase


Domain annotation for each model (and alignments):
>> PTPS  6-pyruvoyl tetrahydropterin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   1.5e-38   2.7e-34       2     121 ..       5     118 ..       4     119 .] 0.97

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.5e-38
                 EEEEEEEEEEE--TTTT..GGGGSTEEEEEEEEEEEEEC-STCTTBSS-HHHHHHHHHHHHHCTTTEECCCC-CCHHCCS.--HHHHHHHHHHHHHHHH CS
        PTPS   2 iskefeFdaaHrlrkhe..gkcrnlHGHnykvevtvegeeldetgmvvdfgelkealkeileelDhkflnaddpeleellspTaEnlaklifeelkerl 98 
                 + kef+F+aaH+l++ +  +kc++lHGH++ v+++++ge++ +tg+v+df+elk+a+k + ++lDh +ln d+p le+   pT+E lak+i++++k+rl
  EHT99298.1   5 LFKEFQFEAAHHLPNVPagHKCGRLHGHSFLVRLEITGEVDAHTGWVMDFAELKAAFKPLYDRLDHYYLN-DIPGLEN---PTSEVLAKWIWDHMKPRL 99 
                 5699**********88888***************************************************.*****97...****************** PP

                 GCCCGCEEEEEEEEETTEEEEEE CS
        PTPS  99 qekevklskvrvwEtpnswaeyr 121
                     + ls+v + Et+++ ++yr
  EHT99298.1 100 ----PLLSAVMIKETCTAGCTYR 118
                 ....9*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 943.90
//
Query:       EHT99299.1  [L=170]
Description: inorganic pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-36  124.5   0.0    3.9e-36  124.3   0.0    1.0  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   2.2e-40   3.9e-36       1     127 [.      40     163 ..      40     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 2.2e-40
                      EEEEE-TTCSEEEEEETTTTEEEEEEE-SSSB-BSSEEEEETT--BTCCBEETSSSEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkeegklrldrvlftskgypanYGfipqTledtelkGDgDPlDvlvlgeeplspgevvevkvlGvlamiDegetDdKii 94 
                      +v Eip+g  +Kye+d ++g ++ dr++   + ypanYG + q l       D+DPlDv+ ++++pl+pg++++ +++Gvl+miD ge DdKi+
       EHT99299.1  40 AVTEIPAGGIIKYETDAKTGFIVADRFQSMPVAYPANYGSLTQSLGG-----DNDPLDVIFYTRAPLAPGTLIKLRPIGVLKMIDGGEVDDKIV 128
                      589******************************************99.....****************************************** PP

                      EEETT..SGGGTT-SSGGGSTHHHHHHHHHHHHHT CS
  Pyrophosphatase  95 avpvk..dprlkkindiedlpgllleeiehfFety 127
                      avp++  dp+++ i+++ dlp++  +++e fF+  
       EHT99299.1 129 AVPAShvDPTYDAIQTVADLPKMEQQRLEAFFSRL 163
                      ****99**************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1536.91
//
Query:       EHT99300.1  [L=223]
Description: radical SAM superfamily protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-12   46.7   0.1    1.3e-11   44.7   0.1    1.9  1  Fer4_14      4Fe-4S single cluster domain
    2.3e-07   31.4   0.1    3.7e-07   30.7   0.1    1.5  1  Radical_SAM  Radical SAM superfamily
    7.3e-06   26.3   0.0    1.2e-05   25.6   0.0    1.4  1  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.1   2.1e-15   1.3e-11       1     100 [.      24     131 ..      24     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 2.1e-15
     Fer4_14   1 lfvrlsgCnlsCkgCdnketwks...................elgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeype 80 
                 +f+rl gC++ C +Cd+k+tw++                    +g+ ++  ll++i     ++   ++ +v+tGGeP +y    +l +l + l   +  
  EHT99300.1  24 IFIRLQGCPVGCSWCDTKHTWEKqadretalgdilvktvesdAWGNADVPMLLSSIA----QQGWTARHIVITGGEPAIY----DLRPLTDALEAAG-- 112
                 7**********************9********9999998888888888888886666....77777778***********....************9.. PP

     Fer4_14  81 kkiwletngtleielektpd 100
                 ++ ++et+gt ei+   ++ 
  EHT99300.1 113 FQCQIETSGTHEIHCS-AQT 131
                 9***********8876.344 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   6.2e-11   3.7e-07       3      88 ..      27     123 ..      25     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 6.2e-11
                  EESEESS--TTTSCCTT.................HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEE CS
                  xxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpet.................vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritve 83 
                   ++gC+ +Cs+C++++t                     + + + +v ++l  + +    + +++++++ggep  y+ +  l+++l +    g+ + +e
   EHT99300.1  27 RLQGCPVGCSWCDTKHTwekqadretalgdilvkTVESDAWGNADVPMLLSSIAQQ--GWTARHIVITGGEPAIYD-LRPLTDALEAA---GFQCQIE 118
                  679****************************8663333333333333333333222..23389***********65.88999999997...******* PP

                  ECSSC CS
                  xxxxx RF
  Radical_SAM  84 tngtl 88 
                  t+gt+
   EHT99300.1 119 TSGTH 123
                  ***98 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     2e-09   1.2e-05       2      84 ..      13     113 ..      12     141 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2e-09
     Fer4_12   2 nGeGvrl.....slfvsgCnlsCkgCfnketwsfk...............sgkeftkelleeiiedlkkesi..egltllGGEPllpenaeallelvke 78 
                 +GeG  +     +++++gC++ C+ C  k tw+ +               +++ + ++    ++ +++++    + ++++GGEP       +l +l + 
  EHT99300.1  13 QGEGYYTgvpaiFIRLQGCPVGCSWCDTKHTWEKQadretalgdilvktvESDAWGNADVPMLLSSIAQQGWtaRHIVITGGEPAI----YDLRPLTDA 107
                 788844333333899*****************8776777777777776668888878888888888877544559*********99....556666666 PP

     Fer4_12  79 vkeekp 84 
                 ++++++
  EHT99300.1 108 LEAAGF 113
                 666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1869.56
//
Query:       EHT99301.1  [L=371]
Description: endonuclease/exonuclease/phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-06   27.6   0.0    3.6e-06   26.7   0.0    1.6  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     2e-10   3.6e-06      24     219 ..     121     335 ..      60     362 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2e-10
                    HHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH...........................ECSSSTTSSEEEEEECSTEEEEEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  24 dlltaydaDvlgLQEvdddelsriplllalggflgasstsp...........................tgggggggnggavlsrfpltslfrrtfi 92 
                    +++t  +aD+l + E+  +++ +   +      l+a  ++p                                               +       
     EHT99301.1 121 QVMTDLRADILTVVEAESRPALLEFNNT----MLPARGGTPfnhvmvidgndergidvglmsaadfaiD-------------------T------- 186
                    4555556666666664444432222222....2222222222333333322222222222222222220...................1....... PP

                    ETSSSSGCEEEEEEEEEEEEEEE............................................CCCHHGHHHHHHHHHHHHHHHHHHHHHTT CS
                    xxxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  93 efndlvaalrreplaakleqlni............................................ashrdhdlvrdlqllalllqvealnadrg 144
                                          i                                               ++ d +r++q+ +++   ++  +d +
     EHT99301.1 187 ----------------------IrshvddkdkqgelifsrdcpeftiplpdgqtllvlvnhfkskgyGAKASSDARRKRQAERVKAIYQQRIKDGQ 260
                    ......................02222222222222222222222222334555555555888888999999************************ PP

                    SEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHH.........SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEEEC CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Exo_endo_phos 145 apvivaGDfNarpsdddsrvlrtrglalapapv.........glyllgggptptyvtraggsrlDrilasp.alalfrsgvlppp 219
                      + ++GDfN +p++           al+p +          +   ++gg+  t+   +    +D+il sp  ++++  g ++ +
     EHT99301.1 261 TLIAITGDFNDTPDSE----------ALSPLLKdtdlkdiftHEKFDNGGYPGTWGGCSASNKIDYILLSPaLWKKVEKGGVWRK 335
                    ***********66665..........4444442344456689****************************966666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2910.92
//
Query:       EHT99302.1  [L=431]
Description: enolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-140  466.0   2.9   6.2e-140  465.6   2.9    1.2  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    1.2e-56  190.5   0.9    2.6e-56  189.4   0.9    1.6  1  Enolase_N  Enolase, N-terminal domain
    1.7e-05   24.5   0.0    3.7e-05   23.4   0.0    1.6  1  MR_MLE_C   Enolase C-terminal domain-like
    0.00037   19.7   0.8     0.0016   17.7   0.1    2.1  2  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.6   2.9  1.4e-143  6.2e-140       2     294 ..     144     429 ..     143     431 .] 0.98

  Alignments for each domain:
  == domain 1  score: 465.6 bits;  conditional E-value: 1.4e-143
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TC..T CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykg..k 98 
                 +++P+P++n+inGG+ha+n++++qefmi+Pvgass+kea+r+G+ev+h+l++vlk k+  ++t+vGdeGG+aPnl sn+eal++i+ea+++aGy+   +
  EHT99302.1 144 YSMPLPMMNIINGGEHADNNVDIQEFMIQPVGASSVKEAIRMGSEVFHNLAKVLKSKG--MSTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELgkD 240
                 78********************************************************..***********************************888* PP

                 BEEEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHH CS
   Enolase_C  99 vkialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaie 197
                 +++a+d+a+sefy  kd+ky l++++      k++tse++++++++l+k+yPivsied+lde+dw++++++t+ lgdk+q+vGddl+vtn+k+lke+ie
  EHT99302.1 241 ITLAMDCAASEFY--KDGKYVLAGEG-----GKAFTSEEFTHFLEDLTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIE 332
                 *************..889*******9.....89****************************************************************** PP

                 CT--SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGGCTT CS
   Enolase_C 198 kkaanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkkvrk 294
                 k++an++l+k+nqiGslte+l+a+k+ak+agy++v+shrsGeted+tiadlavg++aGqiktG+++rs+r+akynql+riee+lg+ka ++G k+ k
  EHT99302.1 333 KGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGSKAPFNGLKEVK 429
                 ********************************************************************************************98765 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.9   5.7e-60   2.6e-56       1     131 []       4     134 ..       4     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.4 bits;  conditional E-value: 5.7e-60
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHH-STT CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdqeeiDkllielDgten 99 
                 I kv +rei+dSrGnpTve+ev++e g +g aa+psGaStg++ealelrDgdk+r+lgkgv+kav++vn  ia+a+ g+d++dq++iDk++i+lDgten
  EHT99302.1   4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAEAVKGKDAKDQANIDKIMIDLDGTEN 102
                 789************************************************************************************************ PP

                 -TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N 100 ksklGaNailavSlAvakaaAkakelplyryl 131
                 ks++GaNailavSlA+akaaA++k++ ly+++
  EHT99302.1 103 KSNFGANAILAVSLAAAKAAAASKGQALYEHI 134
                 ******************************97 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.3e-09   3.7e-05      28     182 ..     220     398 ..     178     416 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 8.3e-09
                 HHHHHHHHHHHHHHTT..TSTSEEEEE-TTT.S................BHHHHHHHHHHHGG.GTESEEESSSSTTTHHHHHHHHHH.HH.SSEEEES CS
    MR_MLE_C  28 aedvervravreavgp..gddvdlmvDanqa.w................dlatAirvarelee.ldllwlEEPvppeddleglaelra.ra.sipiaag 104
                 ae +++++++ +a+g   g+d++l++D+ ++ +                + ++   +++ l + + +  +E+ +    d++g a  ++    +i+++++
  EHT99302.1 220 AEALAVIAEAVKAAGYelGKDITLAMDCAASeFykdgkyvlageggkafTSEEFTHFLEDLTKqYPIVSIEDGLDE-SDWDGFAYQTKvLGdKIQLVGD 317
                 5555555555555555556677888887777524666667777777776999*********776***********9.57********8722589***** PP

                 TTSSS.HHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS.CS.SHHHHHHHHHHHHTTTTBEEEEEE CS
    MR_MLE_C 105 Eslys.radfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHs.gs.gglglaaslhlaaaipnllileyf 182
                     +  + ++e +e+g +  + ++ +++g +te+++ +++a+ +g++ ++ +  + +  +++a l + +a+ +++  +++
  EHT99302.1 318 DLFVTnTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHrSGeTEDATIADLAVGTAAGQIKTGSMS 398
                 987765999**************************************9555552433688999999998888776666555 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.097   4.3e+02     189     221 ..      91     123 ..      72     128 .. 0.78
   2 !   17.7   0.1   3.5e-07    0.0016     136     217 ..     308     390 ..     264     396 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.097
      MAAL_C 189 kgvgaylGGscnetdvsarvsvhvalatrpaql 221
                   + + l G+ n  + +a+++  v+la+  a  
  EHT99302.1  91 DKIMIDLDGTENKSNFGANAILAVSLAAAKAAA 123
                 5566778899****************9876655 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 3.5e-07
      MAAL_C 136 kgikvelvaDeWcntledi.refvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatr 217
                  g k++lv D+   t   i +e ++++ a+ + ik   +G++++t+ a+ ++k+ g  a +   + et+ ++ +   v+ a++
  EHT99302.1 308 LGDKIQLVGDDLFVTNTKIlKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAG 390
                 57899***999877766653899*********************************************988766666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3116.25
//
Query:       EHT99303.1  [L=545]
Description: CTP synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-125  418.0   0.1   1.8e-125  417.6   0.1    1.2  1  CTP_synth_N    CTP synthase N-terminus
    3.2e-64  216.2   0.0    5.9e-64  215.3   0.0    1.5  1  GATase         Glutamine amidotransferase class-I
    1.3e-10   41.5   0.3    1.6e-06   28.0   0.0    2.7  3  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.024   14.7   0.0    1.5  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> CTP_synth_N  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.6   0.1  4.1e-129  1.8e-125       2     265 .]       5     266 ..       4     266 .. 0.99

  Alignments for each domain:
  == domain 1  score: 417.6 bits;  conditional E-value: 4.1e-129
                  EEEEEE--STTTTHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSSTT--CCCC--EEE-TT--EEETHHHHHHHHHT----GGGEEEHHHHHHHHHHH CS
  CTP_synth_N   2 yilvtGGvvSglGkGiiaaslgallksrglkvtlikiDPYlnvdagtlsplehGEvfvlddGaetDlDlGnYeRfldikltkennittGkiyksviek 99 
                  yi+vtGGvvS+lGkGi+aasl+a+l++rgl+vt++k+DPY+nvd+gt+sp++hGEvfv+ddGaetDlDlG+YeRf+ +k++++nn+ttG+iy++v++k
   EHT99303.1   5 YIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPTQHGEVFVTDDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSEVLRK 102
                  9************************************************************************************************* PP

                  HHTTTTTT----CCCHHHHHHHHHHHHHH.HCT-SEEEEEE-S-TTSGGGHHHHHHHHHHHHHH-TTTEEEEEEEE--B-TTTSSB-HHHHHHHHHHH CS
  CTP_synth_N 100 errGdylGktvqviphvtdeikeriekvakkveadvviveigGtvgdieslpfleairqlklelgkenvllihvtlvpvlkaagelktkptqhsvkel 197
                  errGdylG+t+qviph+t++ikeri +  +   +dvv+veigGtvgdieslpfleairq+++++g+e+++++h+tlvp+++aage+ktkptqhsvkel
   EHT99303.1 103 ERRGDYLGATIQVIPHITNAIKERIIEGGE--GHDVVLVEIGGTVGDIESLPFLEAIRQMAVDVGREHTMYMHLTLVPYMAAAGEVKTKPTQHSVKEL 198
                  ***************************998..8***************************************************************** PP

                  HHHT---SEEEEEESS---HHHHHHHHHHCT--GGGEEEEE--S-GGGHHHHHHHCTHHHHHHHHTT- CS
  CTP_synth_N 198 rslGiqpdiivcrsekeleeevkekialfcnvekeavisvkdvesiyevpllleeqglaelileklkl 265
                   s+Giqpd+++crs+++++++ + kialfcnv+++avis kdv+siy++p +l++qgl+++i+++++l
   EHT99303.1 199 LSIGIQPDVLICRSDRAVPANERGKIALFCNVPEKAVISLKDVDSIYKIPGMLKSQGLDDYICKRFNL 266
                  *****************************************************************986 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.0   1.3e-67   5.9e-64       2     190 .]     301     535 ..     300     535 .. 0.93

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 1.3e-67
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH..THHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT........ CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeile..llknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgr........ 90 
                 l D+y+sv+e+l+h +++++v+v+++ id+++ e++   llk+ d+il++gG+g++gvegk++++k+aren++P+LGICLGmQ+++ ef+r        
  EHT99303.1 301 LPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGveLLKDLDAILIPGGFGYRGVEGKLMTAKYARENNVPYLGICLGMQVALMEFARnvagmega 399
                 79*********************************88856***************************************************77777777 PP

                 .........................EEEEEECEEEEEEEEEEEETTT........CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTEE CS
      GATase  91 .........................kvvkekekehhggtmrlgddet........allyglknevierhrHryevnpk...elepaglevtakseddee 153
                                          +v+ ++e++++ggtmrlg++++        ++lyg+ +++ erhrHryevn++   ++e agl+v+++s dd +
  EHT99303.1 400 nstefvpdckypvvalitewrdeegNVEVRSEQSDLGGTMRLGSQQCqltpeskvRQLYGS-DTIVERHRHRYEVNNMllkQIEAAGLRVAGRSGDD-Q 496
                 77777777777777776666666666669999****************************9.***************9****************998.9 PP

                 EEEEEEETT.T.EEEESSBTTSTTSTTHHHHHHHHHHHH CS
      GATase 154 lmeiiekkn.p.fvgvQFHPEststpegpellfnflika 190
                 l+eiie +n p f+++QFHPE+tstp++ ++lf +++ka
  EHT99303.1 497 LVEIIEIPNhPwFIACQFHPEFTSTPRDGHPLFAGFVKA 535
                 ************************************986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.54   2.4e+03      51      67 ..     336     352 ..     303     354 .. 0.75
   2 !   10.5   0.0   8.3e-05      0.37      96     117 ..     363     384 ..     358     395 .. 0.83
   3 !   28.0   0.0   3.6e-10   1.6e-06     133     216 .]     422     517 ..     413     517 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.54
  Peptidase_C26  51 dvkaildkldgllltGg 67 
                       ++l+ ld++l++Gg
     EHT99303.1 336 RGVELLKDLDAILIPGG 352
                    445789999*****998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.3e-05
  Peptidase_C26  96 aLiraalergvPilgiCrGlql 117
                    +  + a e++vP lgiC+G+q+
     EHT99303.1 363 MTAKYARENNVPYLGICLGMQV 384
                    455678899************7 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 3.6e-10
  Peptidase_C26 133 qsgltdhreheq......saashavkvekgsllaellgseeievnslHhqaike......laeelrveAvae.DgviEaieseeakafvlgvQwHP 215
                    ++g+++ r++++         s++ +++++s + +l+gs++i     H+  +++       a +lrv  ++  D+++E ie+++++ ++++ Q+HP
     EHT99303.1 422 EEGNVEVRSEQSdlggtmRLGSQQCQLTPESKVRQLYGSDTIVERHRHRYEVNNmllkqiEAAGLRVAGRSGdDQLVEIIEIPNHP-WFIACQFHP 516
                    55666666666334444477799***************99999999******9999888889*********989**********88.99******* PP

  Peptidase_C26 216 E 216
                    E
     EHT99303.1 517 E 517
                    9 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.4e-06     0.024       8      43 ..      14      49 ..       7     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
                TTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  8 GGvGKTtlaanLaralarrglrVllvDaDpqannla 43
                +  GK   aa+La++l  rgl+V   ++Dp  n + 
  EHT99303.1 14 SSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDP 49
                5569**************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4251.36
//
Query:       EHT99304.1  [L=262]
Description: nucleoside triphosphate pyrophosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-38  129.6   2.0    1.3e-27   95.8   0.0    2.7  3  MazG             MazG nucleotide pyrophosphohydrolase domain
    1.1e-08   35.3   0.1     0.0035   17.7   0.0    2.4  2  PRA-PH           Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.018   14.9   0.2       0.63   10.0   0.1    2.6  2  Erythro-docking  Erythronolide synthase, docking
       0.09   12.1   0.0       0.13   11.6   0.0    1.4  1  Ofd1_CTDD        Oxoglutarate and iron-dependent oxygenase de
       0.16   12.4   0.9        2.3    8.6   0.1    2.4  3  DUF5063          Domain of unknown function (DUF5063)


Domain annotation for each model (and alignments):
>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   3.5e-31   1.3e-27       1      74 []      27     100 ..      27     100 .. 0.99
   2 ?   -1.5   0.0      0.84     3e+03      63      73 ..     145     155 ..     116     156 .. 0.77
   3 !   32.5   0.3     2e-11   7.1e-08       9      69 ..     168     226 ..     161     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 3.5e-31
                 --HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-GGGG CS
        MazG   1 qtpetllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerRhphvf 74 
                 qt+ t+++y+leE++Ev++aI++ed+d+l+ ELGD+L+qv+f+a++a+e+g+++++d++++i +KlerRhph+f
  EHT99304.1  27 QTFATIAPYTLEETYEVLDAIQREDFDDLRGELGDLLFQVVFYAQMAQEQGRFNFDDICHAISDKLERRHPHIF 100
                 7999********************************************************************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.84
                 HHHHHHH-GGG CS
        MazG  63 leKlerRhphv 73 
                  +K+++R+ +v
  EHT99304.1 145 AHKIQKRCHNV 155
                 46889998776 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 2e-11
                 HHHHHHHHHHHHHHT..T-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
        MazG   9 ylleEvgEvaeaIkk..edrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerR 69 
                  + eE++Ev+++ ++   d ++leeE+GD+L+  ++l++     +g + e +++++ +KlerR
  EHT99304.1 168 KVHEEIDEVMHEAQQsvVDPQKLEEEIGDLLFATVNLSRH----LGSKAEIALQKANDKLERR 226
                 5789*********99777888******************7....8888888899999999999 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.8e-07    0.0035      20      62 ..      25      67 ..      10      91 .. 0.79
   2 !   15.4   0.0   5.5e-06      0.02      24      69 ..     160     209 ..     139     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.8e-07
                -HHHHHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHH CS
      PRA-PH 20 taelaslraaligEEavElleaasegdlaeladelaDllYvty 62
                 +++++ +a ++ EE  E+l+a +++d  +l  el Dll+++ 
  EHT99304.1 25 REQTFATIAPYTLEETYEVLDAIQREDFDDLRGELGDLLFQVV 67
                67788889*******************************9864 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.5e-06
                 HHH..HHHHHHHHHHHHHHHT-SC..HHHHHHHHHHHHHHHHHHHHHHCT CS
      PRA-PH  24 asl..raaligEEavElleaaseg..dlaeladelaDllYvtygllvllG 69 
                  +l  + +++ EE++E+ + a+++  d ++l +e+ Dll+ t  l  +lG
  EHT99304.1 160 TTLgpVVDKVHEEIDEVMHEAQQSvvDPQKLEEEIGDLLFATVNLSRHLG 209
                 44444889***********9998888**************9998877776 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.056     2e+02      12      24 ..     132     144 ..     128     149 .. 0.85
   2 ?   10.0   0.1   0.00018      0.63      10      49 ..     221     260 ..     214     262 .] 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.056
                      HHHHHHHHHHHTT CS
  Erythro-docking  12 LDeLekaLeaLsd 24 
                      LD++ kaL aL  
       EHT99304.1 132 LDDIPKALPALMR 144
                      9********9975 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
                      HHHHHHHHHHHHHTTSS-THHHHHHHHHHHHHHHHHHH-S CS
  Erythro-docking  10 dRLDeLekaLeaLsdedGhdDvGaRLeaLLRRWnsRRade 49 
                      d+L+   +a+ea+  ++G    Ga Le +   W+  +ade
       EHT99304.1 221 DKLERRFRAVEAIITAQGLSMPGATLEQMEAAWQQVKADE 260
                      34444457***************************99998 PP

>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.5e-05      0.13      61     143 ..     147     229 ..      78     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.5e-05
                 ----SGGG--TT-EE-B-TTTEE-EEE-SSS----SSHHHHHHHHHHHH.HHHHSHHHHHHHHHHHSE.EE-EEEEEEEEE-T CS
   Ofd1_CTDD  61 elpqkseeiekpWkvagPphkqrylyldseeatekkeeedaeeklkeLlekllkskafrkwlalitgldlltsesilarRfrp 143
                 ++ ++ +++  +W++ gP   +  + +d+  ++ +++  d +++ +e+ + l+ ++++ + l   +++ l ++++ l rRfr 
  EHT99304.1 147 KIQKRCHNVGFDWTTLGPVVDKVHEEIDEVMHEAQQSVVDPQKLEEEIGDLLFATVNLSRHLGSKAEIALQKANDKLERRFRA 229
                 344556666667*******************99999999999999****9******************9999999******97 PP

>> DUF5063  Domain of unknown function (DUF5063)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00064       2.3      61     111 ..      42      92 ..      28      94 .. 0.84
   2 ?    1.3   0.1      0.11   4.1e+02      26      50 ..     125     166 ..     115     213 .. 0.54
   3 ?    0.2   0.0      0.24   8.7e+02      86     136 ..     167     219 ..     160     229 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00064
     DUF5063  61 eleerveEedyealrealarlLgekddYlevfdpdmkysdtpiaasisedL 111
                 e+ + ++ ed++ lr +l +lL +   Y+++ ++  +++  +i ++is++L
  EHT99304.1  42 EVLDAIQREDFDDLRGELGDLLFQVVFYAQMAQEQGRFNFDDICHAISDKL 92 
                 333344468****************************************98 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
     DUF5063  26 eserkefvdeiaklLplLylkasl.................l 50 
                 e++++  +d+i k+Lp L  +                    +
  EHT99304.1 125 EKAQHSALDDIPKALPALMRAHKIqkrchnvgfdwttlgpvV 166
                 355677788888888888776665333333333333333330 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.24
     DUF5063  86 ddYlevfdpdmkysdtpia..asisedLadIyqdlknglavyregneeemeeA 136
                 d+  e++d++m+  ++ ++  +++ e++ d+   + n  +++  + e ++++A
  EHT99304.1 167 DKVHEEIDEVMHEAQQSVVdpQKLEEEIGDLLFATVNLSRHLGSKAEIALQKA 219
                 55567788888876666655888888888888888887777777777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2085.63
//
Query:       EHT99305.1  [L=743]
Description: (p)ppGpp synthetase I/GTP pyrophosphokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-40  137.1   0.3      1e-39  135.8   0.3    1.7  1  HD_4       HD domain
    7.1e-36  123.0   0.0    1.7e-35  121.8   0.0    1.7  1  RelA_SpoT  Region found in RelA / SpoT proteins
    1.4e-21   76.2   0.2      7e-21   74.1   0.0    2.3  3  TGS        TGS domain
    4.6e-18   65.6   1.6    1.3e-17   64.1   1.6    1.8  1  ACT_4      ACT domain
    2.9e-11   42.9   1.3    1.1e-10   41.1   0.3    2.5  2  ACT        ACT domain
  ------ inclusion threshold ------
      0.054   13.5   0.1       0.18   11.8   0.1    1.8  1  ACT_6      ACT domain
       0.17   11.4   0.0        4.2    6.9   0.0    2.4  2  DUF2688    Protein of unknown function (DUF2688)
        1.2    9.6   4.4        3.8    8.0   0.8    3.0  3  Latarcin   Latarcin precursor


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.3   4.5e-43     1e-39      11     155 ..      46     191 ..      33     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 4.5e-43
        HD_4  11 gqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqvenlRkmLlAmve 108
                  q +++++ ll  ++e+++il+ l++d e+++Aal++ + +d   s+ee++++ G+ +++Lv+gv++++++++++a  +++ ++eqv+n+R+mLlAmve
  EHT99305.1  46 TQGHPDQSLLLWRGIEMVEILSMLSMDIESLCAALIFPLANDEvVSEEELEKTVGKGIVSLVHGVRDMDAIRQLKAIHNDSMASEQVDNVRRMLLAMVE 144
                 5677888889999****************************987889***************************9999********************* PP

        HD_4 109 DirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                 D+r+v++klA+r+ +lr +++a+e++r+  a+e+ +iyaplAnrlGi
  EHT99305.1 145 DFRCVVLKLAERIMNLREVKDAPEDERVLAAKESTNIYAPLANRLGI 191
                 **********************************************9 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   7.7e-39   1.7e-35       1     115 [.     251     360 ..     251     362 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 7.7e-39
                 EEE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHH CS
   RelA_SpoT   1 gRvKslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtia 99 
                 gR+K++ysi++K+++k+     +f+e+ D+ ++R++ e  +d+y +l+ +++l+++ p++f+dy+a+pk+ngY+s+Htvv    g+++++vEiQiRt++
  EHT99305.1 251 GRPKHIYSIWRKMQKKS-L---AFDELFDVRAVRIVAERLQDCYGALGTVHTLYRHLPSEFDDYVANPKPNGYQSIHTVV---LGPQGKTVEIQIRTRQ 342
                 6****************.6...8*********************************************************...**************** PP

                 HHHHHH..HHHHHHHHCT CS
   RelA_SpoT 100 mdawae..iehhlrYkek 115
                 m++ ae  +++h++Yke+
  EHT99305.1 343 MHEDAElgVAAHWKYKEG 360
                 ****************86 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.4   1.2e+04      22      42 ..     232     252 ..     223     262 .. 0.77
   2 ?   -2.2   0.0         2   4.5e+03       3      13 ..     325     336 ..     324     346 .. 0.79
   3 !   74.1   0.0   3.1e-24     7e-21       1      60 []     408     467 ..     408     467 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.4
                 HHHHHSTTHHHHEEEEEECSE CS
         TGS  22 fAykIhrslakkfiyAlVnGq 42 
                 f   + +++ak+ + A V G+
  EHT99305.1 232 FVVNLRKEMAKEGVRAEVYGR 252
                 566778899999999999884 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                 EEE.TTSSEEEE CS
         TGS   3 vyt.PdGkvpdl 13 
                 v++ P+Gk++++
  EHT99305.1 325 VVLgPQGKTVEI 336
                 789999999984 PP

  == domain 3  score: 74.1 bits;  conditional E-value: 3.1e-24
                 EEEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   1 irvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 ++v+tP+G+v+dlp g+t+ DfAy+Ih+++++++i+A++ G++v+ +++L+ gd ve++t
  EHT99305.1 408 VYVFTPKGDVVDLPAGSTPLDFAYHIHSDIGHRCIGAKIGGRIVPFTYQLQMGDQVEVIT 467
                 79********************************************************97 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   1.6     6e-21   1.3e-17       4      80 .]     665     741 ..     663     741 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 6e-21
       ACT_4   4 sytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80 
                  y   ++v+a+dr+glL+dit+++++ek+n+  v+++++ k++la+i++++e+ +++ L rv+ +L+++p++i+++R
  EHT99305.1 665 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVSSRSDTKKQLATIDMDIEIYNHQVLGRVLSRLNQVPDIIDARR 741
                 689999********************************************************************999 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.92   2.1e+03      42      61 ..     156     175 ..     150     178 .. 0.87
   2 !   41.1   0.3     5e-14   1.1e-10       2      66 ..     669     734 ..     668     735 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.92
                 EEEEEEEEEEHHHHHHHHHH CS
         ACT  42 givfvvivvdeedleevlea 61 
                 +i+++ +v d+ ++e vl+a
  EHT99305.1 156 RIMNLREVKDAPEDERVLAA 175
                 699999*********99987 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 5e-14
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT.ECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedk.vagivfvvivvdeedleevlealkkle 66 
                 v+rv + Dr GlL +++++la+  +N+  +++rs+  k +a+i + +++ ++++l  vl +l++++
  EHT99305.1 669 VVRVTANDRSGLLRDITTILANEKVNVLGVSSRSDTKKqLATIDMDIEIYNHQVLGRVLSRLNQVP 734
                 799************************************************************998 PP

>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.1e-05      0.18       3      31 ..     668     696 ..     667     701 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.1e-05
       ACT_6   3 llitvtGpdrpGltasLtsvlaefgvnil 31 
                 l+++vt  dr Gl+ ++t +la  +vn+l
  EHT99305.1 668 LVVRVTANDRSGLLRDITTILANEKVNVL 696
                 89*************************98 PP

>> DUF2688  Protein of unknown function (DUF2688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.09     2e+02      13      50 ..      99     135 ..      89     140 .. 0.86
   2 ?    6.9   0.0    0.0019       4.2      25      51 ..     189     215 ..     186     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.09
     DUF2688  13 CGkslstlsrSLlGldeLkqklGdICsdClipEElaeI 50 
                  Gk ++ l +    +d+++q l  I  d +  E   ++
  EHT99305.1  99 VGKGIVSLVHGVRDMDAIRQ-LKAIHNDSMASEQVDNV 135
                 69****************98.88899999998887766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0019
     DUF2688  25 lGldeLkqklGdICsdClipEElaeIe 51 
                 lG+ +Lk +l d C   l pEE ++I 
  EHT99305.1 189 LGIGQLKWELEDYCFRYLHPEEYKRIA 215
                 7999*********************96 PP

>> Latarcin  Latarcin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.8    0.0017       3.8      11      57 ..     124     170 ..      87     178 .. 0.85
   2 ?   -2.2   0.0       2.5   5.6e+03      29      47 ..     275     293 ..     257     303 .. 0.81
   3 ?    1.0   0.1      0.25   5.6e+02      36      65 ..     551     581 ..     490     599 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
    Latarcin  11 aeeLdelergainrklmemvnnlRkvqgRLeemvenlrkvedledtE 57 
                 ++ +  ++  ++ r l+ mv ++R v  +L+e + nlr+v+d ++ E
  EHT99305.1 124 NDSMASEQVDNVRRMLLAMVEDFRCVVLKLAERIMNLREVKDAPEDE 170
                 445555556778899***************************97766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
    Latarcin  29 mvnnlRkvqgRLeemvenl 47 
                 +v  +R v++RL++   +l
  EHT99305.1 275 DVRAVRIVAERLQDCYGAL 293
                 5677899999999987666 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.25
    Latarcin  36 vqgRLeemvenlrkvedledtEEA.Rgafkk 65 
                    RL +mv+ l++  + +  EE  R a ++
  EHT99305.1 551 GDIRLHQMVNFLQAKLNKPTAEEQdREALRQ 581
                 3446999999999888887777742444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4996.26
//
Query:       EHT99306.1  [L=439]
Description: 23S rRNA (uracil-5)-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-29  102.4   0.0    1.7e-27   96.3   0.0    2.7  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    1.6e-10   40.8   0.1    3.3e-10   39.8   0.1    1.5  1  TRAM             TRAM domain
    3.1e-08   33.6   0.0    7.5e-08   32.3   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
    1.1e-06   28.6   0.0      2e-06   27.7   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.9e-05   23.8   0.0    4.1e-05   22.8   0.0    1.4  1  RrnaAD           Ribosomal RNA adenine dimethylase
    2.1e-05   25.1   0.0    7.2e-05   23.4   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    0.00037   20.1   0.0    0.00096   18.7   0.0    1.7  1  MTS              Methyltransferase small domain
     0.0025   17.5   0.0     0.0048   16.6   0.0    1.5  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0027   17.5   0.0     0.0044   16.8   0.0    1.3  1  Met_10           Met-10+ like-protein
     0.0049   16.7   0.9      0.043   13.6   0.0    2.2  2  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   15.1   0.0       0.02   14.4   0.0    1.2  1  DOT1             Histone methylation protein DOT1
      0.013   15.0   0.1      0.033   13.6   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
      0.084   13.2   0.1        0.2   12.0   0.1    1.6  1  PDGF             PDGF/VEGF domain
       0.17   11.5   0.0       0.28   10.9   0.0    1.3  1  N6_N4_Mtase      DNA methylase


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   1.4e-30   1.7e-27       6     357 .]     101     438 ..      96     438 .. 0.79

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.4e-30
  tRNA_U5-meth_tr   6 leekksrlkkllaefeapel...evfespeehyrlraefrl.wheeddlyyimfdqktk.kkirvdefdaaselinelmkallaalkqdeklre 94 
                       ++k + l+++l++ + + +   e+ + p+  yr ra + l wh + +   + f q+   + + +++ ++   ++ +l+  l + l + +++ +
       EHT99306.1 101 QQSKARALARMLTQAAKQPItvdEIIAGPAWGYRRRARLGLqWHSKTQQLQMGFRQEATnDLVDIQQCPVLVPQLEALIIPLRNCLTTLNAV-N 193
                      56777788888877665544223778999999999999987799999999998988654388999999999999999999999999766665.6 PP

  tRNA_U5-meth_tr  95 klfqvdflstlsgellvsllyhkklddewkeaaealkdkleaqeldvnligrarkkkivldkdyveeklevadrelvyrqvensftqPnaavne 188
                      +l +v+ +  l+++  v ll h  ld    +++ +l+   ++++l + l    +  + + ++         + ++l+  +  + f+q n +vn+
       EHT99306.1 194 RLGHVELV--LADNGPVMLLRH--LDALTADDMAKLERFSHQHQLMLFLDDGGEALRAISEQR-----PFYHSHQLTLTFSPQDFIQVNDTVNQ 278
                      79999986..557777777765..777777788888875556666666655555444443333.....334567888899999*********** PP

  tRNA_U5-meth_tr 189 kmleWalevtqeskgd.llelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlkgidlks 281
                      +m+  a+  ++ + +d +l+l+cG Gnf+l++ +++++ +  e   + v+ a yn + n ++nv++ +   e+    ++  r+           
       EHT99306.1 279 QMVARAIARLDLQPDDrVLDLFCGMGNFTLPVGKTVQNAVGVEGVAALVQQAEYNAEVNDLKNVRFFQHNLED---DVS--RQ-------PWAT 360
                      *******99998877549*********************************************9987665554...332..22.......2344 PP

  tRNA_U5-meth_tr 282 yafetifvdPPraGldketvklvkky.erilyiscnPetlkenleel.sethrverlalfdqfpythhlesGvllekk 357
                        f+++++dP raG    + ++vk   +r++y+scnP tl+ + e+l s  +++er+a++d fp+t hles vl++kk
       EHT99306.1 361 QGFNKVLLDPARAGAAGVMSHVVKLSpQRVVYVSCNPVTLARDSETLlSAGYQLERVAMLDMFPHTRHLESMVLFRKK 438
                      5689*********9988888888754279***********999988527789*********************99875 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   2.6e-13   3.3e-10       2      60 ..      11      65 ..      10      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.6e-13
                XXXXXEEEEEEEEE-.TTSEEEEEET.TEEEEETT--T..TEEEEEEEEEE-SSEEEEE CS
        TRAM  2 syvGstqeVlveglsksegegiGrtdngkvvfvpgdlpgIGdfVeVkItkvkrqyLrGe 60
                ++ ++ ++V++e+l+ + g+g++r++ gk++fv g+lp  G+ +eV   + krqy+r++
  EHT99306.1 11 VTTRKRLTVTIEDLD-PFGQGVARHK-GKTLFVAGALP--GEQAEVTLLEEKRQYARAK 65
                577899*********.**********.***********..*****************96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       7.1   9.1e+03      94     112 ..     195     213 ..     180     235 .. 0.64
   2 !   32.3   0.0   5.8e-11   7.5e-08       3      81 ..     292     369 ..     290     408 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.1
  Methyltransf_31  94 leeiervlkpggilliedp 112
                      l+ +e vl ++g +++  +
       EHT99306.1 195 LGHVELVLADNGPVMLLRH 213
                      4567777777776665444 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 5.8e-11
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsn 81 
                       + rvlDl CG G++t+   +++    + vG++  +  +++A+ na+ + l+nv+F q + e+  + + ++ + f+ +l +
       EHT99306.1 292 PDDRVLDLFCGMGNFTLPVGKTVQ---NAVGVEGVAALVQQAEYNAEVNDLKNVRFFQHNLEDdVSRQpWATQGFNKVLLD 369
                      5789**************996543...489***********************************************9987 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.5e-09     2e-06      47     128 ..     266     344 ..     229     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.5e-09
                 -EE.EETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEE CS
        PCMT  47 pls.igynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenviv 128
                 p++ i+ n t+ + +mva+a+  l+l++ +rvL++ +G G  t  + + v++    v++e ++ lv++a+ n + +dl+nv +
  EHT99306.1 266 PQDfIQVNDTVNQ-QMVARAIARLDLQPDDRVLDLFCGMGNFTLPVGKTVQNA---VGVEGVAALVQQAEYNAEVNDLKNVRF 344
                 4432788888876.7****************************9999999876...5***********************987 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.2e-08   4.1e-05      13      78 ..     275     342 ..     266     350 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.2e-08
                 E--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHH..HHCHTTTCCCE CS
      RrnaAD  13 lknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakl..lqkklskdekl 78 
                 ++n++++++++  l+l++++ vl++  G G++T ++ k +++ v +E   +L++   +++++++ +++
  EHT99306.1 275 TVNQQMVARAIARLDLQPDDRVLDLFCGMGNFTLPVGKTVQNAVGVEGVAALVQQaeYNAEVNDLKNV 342
                 68*********************************************999999751144555555555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.7e-08   7.2e-05       1      57 [.     296     351 ..     296     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 5.7e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaed 57 
                      vLdl cG G++tl + k +  ++ +gv+  ++++++a+ +ae ++l nv+f q+++ed
       EHT99306.1 296 VLDLFCGMGNFTLPVGKTV--QNAVGVEGVAALVQQAEYNAEVNDLkNVRFFQHNLED 351
                      9*****************9..9*******************99999*******99976 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.5e-07   0.00096      26      94 ..     287     354 ..     274     372 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.5e-07
                 HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST CS
         MTS  26 tlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve 94 
                  l+ + +++vlDl cG+G  ++ + k  ++   + v+  a+ ++ a+ n+e n+l+ v+++++++ ++v+
  EHT99306.1 287 RLDLQPDDRVLDLFCGMGNFTLPVGKTVQN--AVGVEGVAALVQQAEYNAEVNDLKnVRFFQHNLEDDVS 354
                 566667899*****************9999..789999999***********************999987 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.8e-06    0.0048      42     123 ..     293     372 ..     274     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.8e-06
                    C-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SS CS
  Cons_hypoth95  42 garvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPy 123
                    + rvLDlf+G G   l  +   +++av ve  ++ v++ + n e  +l++ ++ ++++ ++++++++ +++ f+ v lDP  
     EHT99306.1 293 DDRVLDLFCGMGNFTL-PVGKTVQNAVGVEGVAALVQQAEYNAEVNDLKN-VRFFQHNLEDDVSRQPWATQGFNKVLLDPAR 372
                    679***********99.69*************************999997.9****************************54 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-06    0.0044      93     147 ..     284     337 ..     268     374 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.5e-06
                 HHHTT.--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHT CS
      Met_10  93 rlakl.veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklN 147
                  +a+l  +++++V+d+f G+G f++p++k    +  ++++   + v+  + n + N
  EHT99306.1 284 AIARLdLQPDDRVLDLFCGMGNFTLPVGKTV--QNAVGVEGVAALVQQAEYNAEVN 337
                 46666789********************943..33455554444444455555555 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4       0.2   2.6e+02     102     151 ..     195     260 ..      79     269 .. 0.68
   2 !   13.6   0.0   3.4e-05     0.043       9      74 ..     281     350 ..     271     399 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
  Methyltransf_23 102 lrqiatllkpgGylllseplasl..............kedrllldwlylvpag..rhisffsarsl 151
                      l ++   l+++G ++l+ +l  l              ++++l+ld + ++ +   + + f+ +++l
       EHT99306.1 195 LGHVELVLADNGPVMLLRHLDALtaddmaklerfshqHQLMLFLDDGGEALRAisEQRPFYHSHQL 260
                      555555556666655555554445555555555554478888888877766655577777777666 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.4e-05
  Methyltransf_23   9 lsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeq 74 
                      ++++++rl   l+++ rvLd+ cG G+++    + + + +gv+   ++v+ ae        k+ ++ q++ +
       EHT99306.1 281 VARAIARLD--LQPDDRVLDLFCGMGNFTLPVGKTVQNAVGVEGVAALVQQAEynaevnDLKNVRFFQHNLE 350
                      445555553..899*********************99*************9999998874455555555333 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05      0.02      26      89 ..     276     337 ..     265     356 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                 B-HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHHHH CS
        DOT1  26 llpeflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeel 89 
                 ++ +++++ + +++l+++d  +DL  G+Gn +l +   v+  ++vGvE + +  + ae ++e++
  EHT99306.1 276 VNQQMVARAIARLDLQPDDRVLDLFCGMGNFTLPVGKTVQ--NAVGVEGVAALVQQAEYNAEVN 337
                 567889999************************9988765..56****9999999998887765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         6   7.7e+03      91     111 ..       8      28 ..       7      29 .. 0.82
   2 ?   13.6   0.0   2.6e-05     0.033       5      60 ..     296     349 ..     293     367 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6
                     GGSTTSHHHHHHHHHHEEEEE CS
  Methyltransf_4  91 KrRllqpellkelarvLkkgG 111
                     K+R++++++l+   + L + G
      EHT99306.1   8 KQRVTTRKRLTVTIEDLDPFG 28 
                     899999999998888887765 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.6e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-C CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgda 60 
                     vl++ cG+G+f++   k    +n +G+E    +v+++  ++e ++lkN+r ++++ 
      EHT99306.1 296 VLDLFCGMGNFTLPVGKT--VQNAVGVEGVAALVQQAEYNAEVNDLKNVRFFQHNL 349
                     78999********99986..689*******************************95 PP

>> PDGF  PDGF/VEGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00016       0.2      21      40 ..      76      95 ..      59     125 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
        PDGF 21 ifkPsCvevqRCsGCCndes 40
                  +P+C + +RC+GC +++ 
  EHT99306.1 76 RVEPRCPHFSRCGGCQQQHV 95
                567************77543 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.28     178     221 ..     278     322 ..     226     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
                  HHHHHHHH.HHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEES CS
  N6_N4_Mtase 178 vallerlI.klstkkgdivlDpFaGSGtTavaakelgrkfiGiei 221
                   +++ r+I +l ++++d vlD F+G G     + +   +++G+e 
   EHT99306.1 278 QQMVARAIaRLDLQPDDRVLDLFCGMGNFTLPVGKTVQNAVGVEG 322
                  5777888878999**************988888888889999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3099.05
//
Query:       EHT99307.1  [L=909]
Description: hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-49  166.0   0.2    1.4e-48  164.6   0.2    1.8  1  DUF2222        Uncharacterised signal transduction histidine 
    2.8e-30  105.1   0.7    5.5e-30  104.2   0.7    1.5  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    2.3e-26   92.2   1.1    1.1e-24   86.7   0.8    2.8  2  Response_reg   Response regulator receiver domain
      7e-19   67.6   0.1      7e-19   67.6   0.1    3.5  4  HisKA          His Kinase A (phospho-acceptor) domain
    1.9e-12   47.2   1.7    1.9e-12   47.2   1.7    2.3  2  Hpt            Hpt domain
    1.3e-07   31.8   0.9    3.6e-07   30.5   0.9    1.8  1  HAMP           HAMP domain
  ------ inclusion threshold ------
       0.08   12.9   0.0       0.19   11.7   0.0    1.6  1  HATPase_c_2    Histidine kinase-like ATPase domain
       0.11   12.3   0.0       0.26   11.1   0.0    1.6  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
       0.14   11.5   0.0       0.29   10.5   0.0    1.4  1  Pkinase        Protein kinase domain
       0.67    9.6   8.4        1.8    8.2   1.1    2.4  2  Laminin_I      Laminin Domain I


Domain annotation for each model (and alignments):
>> DUF2222  Uncharacterised signal transduction histidine kinase domain (DUF2222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.2   7.5e-52   1.4e-48       1     148 []      31     177 ..      31     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 7.5e-52
     DUF2222   1 inRyneLeeqLierGssiiepLAiaseyglttknreslkrLisalhrknselvrsIaiFdaenqlfvtsnyhkdfeslrlkegaelpeetevesledsl 99 
                 ++RyneL++q+ie+G++iiepLA++ ey++t +nr++l++L+s lh+++s +vr+I++Fd++nql+vtsn +++ +  + k+ ++lpe++++e +++ l
  EHT99307.1  31 VHRYNELQRQVIEAGANIIEPLAVSTEYSMTWHNRDALRELVSLLHHRHSGIVRAISVFDDNNQLYVTSNTNQNLSLKTKKAIQALPEDVSLEGSGNLL 129
                 69************************************************************************************************* PP

     DUF2222 100 ilrtPiisenesleeeaeeaeaksqqklLGYvaieldkesarleqyrei 148
                 ilr Pi+se++  +e    ++ak + ++LGYvaield++s+rl+qyre+
  EHT99307.1 130 ILRKPITSERYAVDEL-PGQDAKPAGNPLGYVAIELDLQSVRLQQYREV 177
                 ************9999.9999**************************96 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.7   3.1e-33   5.5e-30       1     111 [.     404     519 ..     404     520 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 3.1e-33
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.....EETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEE CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveika.....seddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiw 93 
                 gd  rL+qi++nl++Na+kf t++g+i +++++     ++++l+i+v+D+GiGi++e++ +lf++f q d+s +r++gg+GlGl i +klv+ m+Gei+
  EHT99307.1 404 GDALRLQQILINLMGNAIKF-TEKGTINLRVEQhtftaTQVELEIQVRDTGIGISEEQQAQLFQAFRQaDASISRRHGGSGLGLVITQKLVREMNGEIT 501
                 6899****************.******99999755544349************************************************9999****** PP

                 EEEETTTEEEEEEEEESS CS
   HATPase_c  94 vesepgrGttftftlple 111
                 + s++++G+tf+++++l+
  EHT99307.1 502 FVSRQNHGSTFWVRVKLD 519
                 **************9986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.077   1.4e+02      87     109 ..     622     644 ..     604     647 .. 0.83
   2 !   86.7   0.8   6.4e-28   1.1e-24       1     111 [.     667     778 ..     667     779 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.077
                   HHHHHCTESEEEESSG-HHHHHH CS
  Response_reg  87 vealkagaddflsKpfdpeeLlk 109
                    e    g+d++++Kp+++++Ll 
    EHT99307.1 622 DELKVRGIDGCIAKPVSQTRLLP 644
                   5566789***********99975 PP

  == domain 2  score: 86.7 bits;  conditional E-value: 6.4e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   v+ vdD+p++++l+  lle e++e+   ++++++a++ +++++ d+il+Di+mp++dG+++ + ir+ +   ++p++++tah+ + ++++ ++ag++
    EHT99307.1 667 VMAVDDNPANLKLIGALLE-EQVEHSILCNNAEQAIHVAHRQALDVILMDIQMPDIDGIRASEIIRTLPnhANTPIVAVTAHAIDGEREHLIRAGMN 762
                   789****************.66768889***************************************997788************************ PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   d+l+Kp+d+++L + l
    EHT99307.1 763 DYLAKPIDENKLSQVL 778
                   ************8865 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.7   3.1e+03      19      49 ..     242     266 ..     229     286 .. 0.44
   2 !   67.6   0.1   3.9e-22     7e-19       2      67 .]     293     357 ..     292     357 .. 0.95
   3 ?   -2.5   0.0       3.1   5.6e+03      34      58 ..     842     871 ..     828     878 .. 0.77
   4 ?   -3.4   0.2       5.8     1e+04      36      53 ..     890     907 ..     881     908 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.7
                 HHHHHHHHHHC..T-HSSCHHHHHHHHHHHH CS
       HisKA  19 ailgnaeaLkregklteelkeyletiesear 49 
                 a+ + +       ++ ee + +++++    r
  EHT99307.1 242 AMAMSLT------AYHEEMQHNIDQATWDLR 266
                 2222222......244444444444443333 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 3.9e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++fla+++HELrtPL+++lg++  + ++ +l+  +++y  tie++a+ l+++++d+Ld+s++eag
  EHT99307.1 293 KSEFLANMSHELRTPLNGVLGFTRQMLKT-PLRTTQRDYMLTIERSANNLLSIINDVLDFSKLEAG 357
                 79*********************997554.9*********************************97 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.1
                 HSSCHHHHHHHHHHHH.....HHHHHHHHH CS
       HisKA  34 teelkeyletiesear.....rldhlvedl 58 
                    l+e +++++ +a      r+ +l   l
  EHT99307.1 842 AVALREIIHKLHGSASysgvpRMKQLCRKL 871
                 466888888888888888888888887665 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5.8
                 SCHHHHHHHHHHHHHHHH CS
       HisKA  36 elkeyletiesearrldh 53 
                 el++  e + ++arr+++
  EHT99307.1 890 ELQDEMENVARQARRVLA 907
                 566667888888888865 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       5.7     1e+04      11      17 ..     266     272 ..     250     294 .. 0.53
   2 !   47.2   1.7   1.1e-15   1.9e-12       1      83 [.     817     899 ..     817     901 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.7
                 HHHHHHH CS
         Hpt  11 eelleql 17 
                 +e leql
  EHT99307.1 266 RETLEQL 272
                 3333333 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 1.1e-15
                 HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHHHH CS
         Hpt   1 ellelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepellealkallealr 83 
                 +ll+++le ++e ++++ q ++++d  +l+++ H+L+Gsa++ G++++++l+++lE+ l +a++ e+ +++l +l++++e+++
  EHT99307.1 817 DLLRMLLEFLPEVHAKIVQYMAENDAVALREIIHKLHGSASYSGVPRMKQLCRKLEKELHQASDIEALEPELLELQDEMENVA 899
                 5899*****************************************************88788888888888888*****9987 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.9     2e-10   3.6e-07       2      52 ..     198     248 ..     197     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2e-10
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 l+r ++ P+r+++++++ri++G+ld+r++ +   E+  L   +NaM+ +L 
  EHT99307.1 198 LMRDVTGPIRNMVSTVDRIRRGQLDSRVEGHMLGELSILKNGINAMAMSLT 248
                 8999*******************************************9985 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.19      42     114 ..     419     500 ..     407     516 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
  HATPase_c_2  42 Navehayleapegpvevr.....lesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvDev..ey 114
                  Na++   +    g++++r     ++ ++ +l+++v+D G g   e++++  +  +        +     +G+Gl ++++lv e+  e+
   EHT99307.1 419 NAIKFTEK----GTINLRveqhtFTATQVELEIQVRDTGIGISEEQQAQLFQ--AfrqadasiSRRHGGSGLGLVITQKLVREMngEI 500
                  44444444....4555554455788888889999*****9977766555443..1246788888899999***********9985544 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.26       9      77 ..     415     486 ..     408     537 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
  HATPase_c_3   9 elvdNsld.Adaenvkievnknr....gktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGl 77 
                   l  N++   +  ++++ v++      + + ei+++D G G+see+  + ++  +++    + s+ +G  G+Gl
   EHT99307.1 415 NLMGNAIKfTEKGTINLRVEQHTftatQVELEIQVRDTGIGISEEQQAQLFQAFRQADA--SISRRHGGSGLGL 486
                  5556666645555666666644432113449**************99998887766666..3677788888885 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016      0.29      41      87 ..      63     109 ..      52     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHH CS
     Pkinase  41 kekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggelad 87 
                 +++++lrE+  l + +h+ ivr ++vf ++++ly+  +  ++ +l++
  EHT99307.1  63 HNRDALRELVSLLHHRHSGIVRAISVFDDNNQLYVTSNTNQNLSLKT 109
                 44789*****************************9998888777665 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.1      0.01        18       3      51 ..     239     288 ..     238     361 .. 0.66
   2 ?    8.2   1.1   0.00099       1.8      26      68 ..     865     907 ..     863     908 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
   Laminin_I   3 slnsltgaleapy.kinanledltkeLqeklskesakkskieilekeles 51 
                 ++n++++ l a + +++ n+++ t  L+e l++ + +++++++++k  ++
  EHT99307.1 239 GINAMAMSLTAYHeEMQHNIDQATWDLRETLEQLEIQNVELDLAKKRAQE 288
                 799999999887636999**********************9999986554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00099
   Laminin_I  26 keLqeklskesakkskieilekelesLaqeteeLqkkatqvla 68 
                 k+L +kl+ke  ++s+ie le el +L+ e+e+ + +a +vla
  EHT99307.1 865 KQLCRKLEKELHQASDIEALEPELLELQDEMENVARQARRVLA 907
                 7999************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6531.30
//
Query:       EHT99308.1  [L=378]
Description: glycerate kinase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.6e-150  499.4  10.3   6.3e-150  499.2  10.3    1.0  1  Gly_kinase  Glycerate kinase family


Domain annotation for each model (and alignments):
>> Gly_kinase  Glycerate kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.2  10.3  3.5e-154  6.3e-150       1     365 [.       3     373 ..       3     374 .. 0.99

  Alignments for each domain:
  == domain 1  score: 499.2 bits;  conditional E-value: 3.5e-154
  Gly_kinase   1 iviapdsFkgslsaaevaeaiaegikkaapeaevvklplaDGGeGtvealvaalggelvevevtgplgrpveakyglledektAviEmAeasGlklvpe 99 
                 iviapds+k+slsa +va+ai++g++++ p+a++vk+p+aDGGeGtvea+vaa++g++++++vtgplg+pvea yg++++++tA+iEmA+asGl+lvp+
  EHT99308.1   3 IVIAPDSYKESLSALDVASAIEAGFREIFPDAHYVKIPVADGGEGTVEAMVAATQGKKIRLQVTGPLGEPVEAFYGVSGNDETAYIEMAAASGLELVPA 101
                 8********************************************************99********************99****************** PP

  Gly_kinase 100 eernplktttyGvGelikaaldkgarkiiigiGGSatnDgGaGmlqaLGvrfldadgkelepggaaLaklasidlskldprlkdveitvacDvtnpLlG 198
                 ++r+pl+tt++G+Gelik+aldkg+++iiigiGGSatnDgGaGm+qaLG+r+ld++g+e+ pgg+aL +la+id+s+ld+r+++++++vacDvtn L+G
  EHT99308.1 102 ARRDPLITTSFGTGELIKNALDKGVKHIIIGIGGSATNDGGAGMMQALGARLLDKQGEEIGPGGGALPHLARIDISRLDSRIRACRFEVACDVTNTLTG 200
                 *************************************************************************************************** PP

  Gly_kinase 199 eeGaaavFgpQKGatpeqveeldaalehlaevlkkdlg......pGaGAAGGlgaallaflgaelksGielvlelvgleeklkeadlviTGEGrlDsqt 291
                  +Ga+avFgpQKGatpe+v+ ld+al+h+a+++++dlg      +G GAAGG+gaal+af++a l++Gie+v+e++gl+++l++a+lviTGEGr+Dsq+
  EHT99308.1 201 DDGASAVFGPQKGATPERVALLDKALTHYAAMIQRDLGmdvlqvSGGGAAGGMGAALYAFCQAALRPGIEIVTEALGLAAQLQDAQLVITGEGRIDSQS 299
                 ***********************************997789999******************************************************* PP

  Gly_kinase 292 lsGKvpvgvaklakkagvpvialaGsveedaeeleeagidavfsildgpesleealeeaaelleeaaeqvarll 365
                 ++GKvp+gvak+ak+ g+pvi +aGs+++d   ++++gidavfs+l + +sl+eal+ a+++++ +a++va++l
  EHT99308.1 300 INGKVPIGVAKVAKRFGLPVIGIAGSLTDDVGVVHQHGIDAVFSVLYRICSLDEALDGARNNVRLTARNVAATL 373
                 ***********************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2868.55
//
Query:       EHT99309.1  [L=294]
Description: tartronate semialdehyde reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-48  163.2   2.5    8.1e-48  162.6   2.5    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    2.1e-39  134.5   1.0    3.3e-39  133.9   1.0    1.3  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    5.1e-08   33.4   1.7    3.1e-07   30.9   0.2    2.4  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    1.3e-07   31.2   0.2    2.7e-07   30.1   0.2    1.5  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0016   17.5   0.4     0.0024   16.9   0.4    1.3  1  PDH             Prephenate dehydrogenase
     0.0029   17.5   0.8        0.2   11.5   0.1    2.6  3  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.003   17.1   0.3     0.0089   15.6   0.1    1.9  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
  ------ inclusion threshold ------
      0.017   15.2   1.1       0.04   14.0   0.1    2.1  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.042   14.1   0.0      0.095   13.0   0.0    1.6  1  AlaDh_PNT_N     Alanine dehydrogenase/PNT, N-terminal domain
      0.045   13.2   0.1       0.21   11.0   0.0    1.9  2  Epimerase       NAD dependent epimerase/dehydratase family
        0.1   12.8   0.2       0.26   11.5   0.2    1.8  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
        0.1   13.0   0.0       0.26   11.7   0.0    1.7  1  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   2.5   5.4e-51   8.1e-48       1     158 []       2     161 ..       2     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 5.4e-51
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS...HCCC--TT-EEEE-S--- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg...llealkkgdilidgstss 93 
                    kigfiGlG+MG+ m +nllkagy+++v ++++e+  elva ga++a++++e++ ++dvvitmv+++++v+ev+ g   +++ +k+g i+id+s+++
     EHT99309.1   2 KIGFIGLGIMGKLMSKNLLKAGYSLVVRDHHAENEAELVALGATTASNAKEIAGQCDVVITMVPNSPQVKEVCLGengIINGAKPGLIVIDMSSIA 97 
                    79************************************************************************99******************** PP

                    HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE-E CS
  NAD_binding_2  94 pedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthviG 158
                    p ++re++++l++k++++ldaPVSGGe +A +GtLs+mvGG++++f+++ ++++a++ +v+h+ G
     EHT99309.1  98 PLASREIHDALAAKQIRMLDAPVSGGEPKAIEGTLSVMVGGDKAVFDQCYDIMKAMAGSVVHT-G 161
                    **********************************************************99965.5 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   1.0   2.2e-42   3.3e-39       1     119 [.     164     281 ..     164     284 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 2.2e-42
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     GaG+++Kl+n++++a+n+aa+sEal la+kaG++pe v+++i++++++s++l+ k p +v++r+f+pgF++dl++KDl+ al++ ++ gaplpl+
      EHT99309.1 164 GAGNVTKLANQVIVALNIAAMSEALSLATKAGVNPELVYQAIRGGLAGSTVLDAKAP-MVMDRNFKPGFRIDLHIKDLANALDTSHDIGAPLPLT 257
                     9********************************************************.9************************************ PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaiv 119
                     a+++++++a++++g+g aDhsa++
      EHT99309.1 258 AAVMEMMQALRNDGQGTADHSALA 281
                     *********************987 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   2.1e-10   3.1e-07       1      78 [.       2      74 ..       2      95 .. 0.72
   2 ?    1.1   0.1      0.41   6.1e+02      57      94 ..     180     217 ..     165     220 .. 0.63

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.1e-10
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-H.HHHHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkp.edveevl 78
                   kig+iG G mg+ + ++ll+ag   +++vv  + + e  +el +  g  +ta++++e a ++dvv+  v+   +v+ev+
     EHT99309.1  2 KIGFIGLGIMGKLMSKNLLKAG---YSLVVR-DHHAENEAELVAL-G-ATTASNAKEIAGQCDVVITMVPNsPQVKEVC 74
                   7*********************...****55.6666666666544.4.355558999999********99524566666 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.41
                    HHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEE CS
  F420_oxidored  57 eaaeeadvvvlavkpedveevlselakdalkgklvisv 94 
                      a+ ++ + la k  + +e++ ++ +  l+g++v+++
     EHT99309.1 180 NIAAMSEALSLATKAGVNPELVYQAIRGGLAGSTVLDA 217
                    34445666667777777777777777777777777776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.2   1.8e-10   2.7e-07      38     158 ..       2     125 ..       1     135 [. 0.89

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.8e-10
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SEEEE-S--STTTTTSB..SHHHHHCSTTTEEEEESS-GGG CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv.elvsleellaesDivslhlpltpetrhli..naeelakmkkgailiNtaRGgl 131
                   ++G iGlG +G+ + k l + g  +++ d++ ++e+e  +lg+ +  + +e+  ++D+v+ ++p +p+ +++   ++  ++  k+g i+i ++  + 
    EHT99309.1   2 KIGFIGLGIMGKLMSKNLLKAGYSLVVRDHHAENEAELVALGAtTASNAKEIAGQCDVVITMVPNSPQVKEVClgENGIINGAKPGLIVIDMSSIAP 98 
                   79*******************************999999***955559*********************99762245569***************** PP

                   B-HHHHHHHHHTTSCCEEEES--SSSS CS
  2-Hacid_dh_C 132 vdeeaLleaLksgkiagaalDvfeeep 158
                   +  + + +aL +++i++    v   ep
    EHT99309.1  99 LASREIHDALAAKQIRMLDAPVSGGEP 125
                   ***************987666666665 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   1.6e-06    0.0024       9     114 ..      23     129 ..      15     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                 T--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-..GGGHHHHHHH..HHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEE CS
         PDH   9 gfkvtvigydideekaeaalelglvdeatddieavkeadivvlavP..vevilevlke..laphlkedalitDvgsvKekvvreleellkegksfvggh 103
                 g   +++ +d+ +e+ ++ ++lg+  + +   e + ++d+v+  vP  ++v + +l e  +++  k++++++D++s+    +re+++ l+ ++     +
  EHT99309.1  23 G--YSLVVRDHHAENEAELVALGATTASNA-KEIAGQCDVVITMVPnsPQVKEVCLGEngIINGAKPGLIVIDMSSIAPLASREIHDALAAKQIRMLDA 118
                 5..577889****************99999.599************65567777887733677999************************999999999 PP

                 ES---S-SSGG CS
         PDH 104 PmaGteksGvd 114
                 P+ G+e + ++
  EHT99309.1 119 PVSGGEPKAIE 129
                 ****9877666 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00013       0.2       1      34 [.       2      35 ..       2      46 .. 0.88
   2 ?    4.5   0.0      0.02        29      67      99 ..      44      77 ..      32     110 .. 0.75
   3 ?   -1.9   0.0       1.8   2.7e+03     159     179 ..     142     162 ..     133     193 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseea 34
                k++ iG G+mG+ + + +++ag++ v+ d ++e 
  EHT99309.1  2 KIGFIGLGIMGKLMSKNLLKAGYSLVVRDHHAEN 35
                6899************************997665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
                EEEES-HHHHH.C-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N 67 isfttdleeav.dadlviEavvEnlelKrkvfae 99
                 +++++ +e++ ++d+vi  v+ + ++K+  + e
  EHT99309.1 44 ATTASNAKEIAgQCDVVITMVPNSPQVKEVCLGE 77
                356677888999****************977655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 159 tvatvvelakkigktpvvvkd 179
                 ++++ ++++k++   +v++ d
  EHT99309.1 142 VFDQCYDIMKAMAGSVVHTGD 162
                 444444444444444444333 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     6e-06    0.0089       6      73 ..       2      69 ..       1      78 [. 0.92
   2 ?   -2.5   0.0       2.2   3.4e+03      29      57 ..     174     204 ..     159     210 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6e-06
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHH CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelq 73
                ki  iG G  G+  ++nl  +g  +vv  ++ ++ ++     + +  +++e++ + dvv++++P++ q
  EHT99309.1  2 KIGFIGLGIMGKLMSKNLLKAGYSLVVRDHHAENEAELVALGATTASNAKEIAGQCDVVITMVPNSPQ 69
                7999************************99999999999999999999****************9866 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                 -EEEEE-..TT-HHHHHHHHTT-EEEEHHHH CS
        IlvN  29 dvvvglr..egsksvkkAkeegfevltvaea 57 
                 +v+v+l+  + s+ ++ A+++g++   v +a
  EHT99309.1 174 QVIVALNiaAMSEALSLATKAGVNPELVYQA 204
                 4555554113345566677777666655555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.7e-05      0.04      14      85 ..       2      66 ..       1     110 [. 0.79
   2 ?   -0.9   0.1         1   1.5e+03      18      37 ..     163     182 ..     156     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatas 85
                  k+  iG G m++l+ k+Ll++g+  +vv     e+ +el+         a++ ++ ke+  ++dvvi+ +  
    EHT99309.1  2 KIGFIGLGIMGKLMSKNLLKAGYS-LVVRDHHAENEAELVAL------GATTASNAKEIAGQCDVVITMVPN 66
                  6889*******************9.88888777777777544......367899999999*******97654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
                   ES-SHHHHHHHHHHHCCT-C CS
  Shikimate_DH  18 iGaGemaelvakhLlakgvk 37 
                   iGaG++ +l+ + ++a ++ 
    EHT99309.1 163 IGAGNVTKLANQVIVALNIA 182
                   89999999998888776655 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.4e-05     0.095      21     113 ..      17     117 ..      15     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.4e-05
                  HHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--...........CHCGGGS-TTCEEEEE--GG..CHHHHHHHHHH CS
  AlaDh_PNT_N  21 kkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkeps..........eeelellkegqtlisflhla..anpellealae 106
                  k+L+kaG++++V  +     + +++e  + Ga+ +++a+e++ ++d+++   + s          +  ++  k+g ++i ++++a  a++e  +ala+
   EHT99309.1  17 KNLLKAGYSLVVRDHH----AENEAELVALGATTASNAKEIAGQCDVVITMVPNSpqvkevclgeNGIINGAKPGLIVIDMSSIAplASREIHDALAA 110
                  6789999999998887....66789999********************9875554446666666677788899******999999777********** PP

                  CTEEEEE CS
  AlaDh_PNT_N 107 kgvtaia 113
                  k++++++
   EHT99309.1 111 KQIRMLD 117
                  **99987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.21       8      71 ..       9      63 ..       6      73 .. 0.85
   2 ?   -0.6   0.0       0.5   7.5e+02      55     108 ..     145     197 ..     104     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                SHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  8 GfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                G +G+ + k+ll++gy ++++d+   a+n     ++elv l  t +s+ +++    q+d+vi +
  EHT99309.1  9 GIMGKLMSKNLLKAGYSLVVRDHH--AEN-----EAELVALGATTASNAKEIAG--QCDVVITM 63
                899*********************..333.....33789999999999999988..99999976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.5
                 HHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCT CS
   Epimerase  55 alerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlleaarkagvk 108
                 ++ +++k  ++  v+h + +g  +++   ++ ++  n++ + + l+ a kagv+
  EHT99309.1 145 QCYDIMK-AMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALSLATKAGVN 197
                 5555556.3777888998888888888888888888999999999998888886 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00017      0.26       5      43 ..     168     206 ..     165     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
  UDPG_MGDP_dh   5 liKlaaNaflatkIsfiNelanlcealgidveeVieavg 43 
                   ++Kla+ ++ a++I+ + e   l+ + g++ e V +a+ 
    EHT99309.1 168 VTKLANQVIVALNIAAMSEALSLATKAGVNPELVYQAIR 206
                   79********************************99986 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.26      24      76 ..      17      66 ..      14      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                    HHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S-- CS
  UDPG_MGDP_dh_C 24 eeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaivilteh 76
                    ++Ll++g+ +++ D ++++ea+     + g++++++++e + ++d+++ +++ 
      EHT99309.1 17 KNLLKAGYSLVVRDHHAENEAELV---ALGATTASNAKEIAGQCDVVITMVPN 66
                    789****************99988...569*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2316.68
//
Query:       EHT99310.1  [L=256]
Description: alpha-dehydro-beta-deoxy-D-glucarate aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-57  192.6   0.0    5.5e-57  192.4   0.0    1.0  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
    0.00059   18.8   0.0    0.00084   18.3   0.0    1.2  1  PK               Pyruvate kinase, barrel domain
  ------ inclusion threshold ------
      0.024   13.7   0.2       0.74    8.9   0.2    2.5  2  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.0   9.1e-61   5.5e-57       2     220 ..      21     245 ..      20     246 .. 0.95

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 9.1e-61
                 EEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGGHHHTTSSEEEESS--SHHHHH CS
   HpcH_HpaI   2 iglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdlevldlgaqvvlvPkvetaeeal 100
                 ig + ++an+ ++e + +ag+D++++D+E+a+         +++ +++ ql+al+   s++vVR++ +++++ik+   +ld+g++++lvP+ve+++ea+
  EHT99310.1  21 IGSWCALANPLSTEVLGLAGFDWLVLDGEHAP---------NDITTFVPQLMALKGSDSAPVVRPPCNEPVIIKR---LLDIGFNNILVPFVENEDEAR 107
                 678*****************************.........**********************************...********************* PP

                 HHHHHTSHTTTS---...................HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHHHHHTT CS
   HpcH_HpaI 101 evvsalrepekgirg...................anketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevldareriltaa 180
                  +v+ +r+p++girg                    n+++++l+qiE++++v+n+++Iaaveg+dg+f+G+ Dlsa+lg+ ++p ++ vl ++++i   a
  EHT99310.1 108 RAVASTRYPPAGIRGvsvshrsnmygtmpaynstINDNITVLVQIETQQAVDNIDAIAAVEGVDGIFVGPGDLSAALGYLGQPAHPAVLPVIKHIFERA 206
                 *****************************************************************************************6666666555 PP

                 HCEEEEEEE.E-SSHHHHHHHHHTTHCEEEEEEHHHHHHH CS
   HpcH_HpaI 181 raagiaaldtvasdiddaegflaegalfvalGfdgkllin 220
                 +aa+    +++a  + da+++l++ga+fva+G+d+ ++++
  EHT99310.1 207 KAANK-PSGILAPVEADARRYLEWGATFVAVGSDLGVFRS 245
                 55555.5555************************999875 PP

>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-07   0.00084     215     276 ..     143     212 ..     128     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-07
                 CTTSEEEEEE-SCHHHHTHHHH..HHHSSEEEEEHHHHHHHS.....T.CCCHHHHHHHHHHHHHHHT-- CS
          PK 215 gkeikiiakienqegvenldei..leasDgimvarGDlGiei.....p.aekvllvqkklikkcnlagkp 276
                 + +i ++ +ie q++v+n+d i  +e  Dgi v  GDl   +     p  + vl v k++ +++++a+kp
  EHT99310.1 143 NDNITVLVQIETQQAVDNIDAIaaVEGVDGIFVGPGDLSAALgylgqPaHPAVLPVIKHIFERAKAANKP 212
                 5799*****************9556779*********987762222222357777888888888888886 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.013        75      80     115 ..      83     126 ..      68     135 .. 0.61
   2 ?    8.9   0.2   0.00012      0.74     173     253 ..     143     215 ..      83     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.013
                      EEEEXXXSSCCGGSGGC........HHHH.XSXGGGSSXTHHHH CS
  PEP-utilizers_C  80 vvvRtlDiggdkelpel........keepeevNPmlGfRgirlg 115
                      ++ R+lDig +  l  +          + + + P  G+Rg++++
       EHT99310.1  83 IIKRLLDIGFNNILVPFvenedearRAVASTRYPPAGIRGVSVS 126
                      34477777777666655455555554455555666666666654 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00012
                      XTTXEEEEEEXSHHHHHTHHHHCTT..SSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEE CS
  PEP-utilizers_C 173 kkkvkvGiMiEvpsaalladklake..vdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgi 253
                      ++++ v + iE+ +a+  +d +a    vd++ +G  DL           +++ +l +p +pavl++ik++ + a+++++  gi
       EHT99310.1 143 NDNITVLVQIETQQAVDNIDAIAAVegVDGIFVGPGDLS----------AALGYLGQPAHPAVLPVIKHIFERAKAANKPSGI 215
                      556666666777777777776654333777777777763..........4577899*******************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2028.24
//
Query:       EHT99311.1  [L=445]
Description: glucarate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-40  136.6   0.3    1.3e-39  136.1   0.3    1.2  1  MR_MLE_C  Enolase C-terminal domain-like
    1.7e-05   25.0   0.1      3e-05   24.2   0.1    1.4  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.3   1.4e-43   1.3e-39       2     219 ..     187     404 ..     186     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 1.4e-43
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTH...HHHHHHHHHHH CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppedd...leglaelrara 97 
                 +++ a++++++ gf  +Klk g    +++++  +a+++++ p+  +++ vD n+aw l++Air+++ ++++ l++ E+P+ +e+    +e + e r ra
  EHT99311.1 187 IVRLAEAAQDKYGFHDFKLKGGVLPGEQEIATAQALKKRF-PD--ARITVDPNGAWRLDEAIRLCKGMQDV-LTYAEDPCGAEQGysgREVMVEFR-RA 280
                 677888889999********9999****************.75..5**********************885.9*********65411155677777.66 PP

                 .SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGH.TSGCSB CS
    MR_MLE_C  98 .sipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldael.leeell 193
                  ++p+a+++ ++++ ++ + l+ + vdi  +d++ +  ++++++va+++++fg+++  Hs++ ++++la+ +h+aaa+p+   + ++++ ++  +++l+
  EHT99311.1 281 tGLPVATNMIATDWRQMGHTLSLQSVDIPLADPHFWT-MQGSVRVAQMCHEFGLTWGSHSNNhFDISLAMFTHVAAAAPGNITAIDTHWIWQeGNQRLT 378
                 7***********************************6.**********************8669*************************9999****** PP

                 SSSSEEETTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 194 eeplevedGrvtvpdgpGlGveldee 219
                 + p+++e Grv+vp++pGlG+eld+e
  EHT99311.1 379 KAPFQIEGGRVAVPQKPGLGIELDRE 404
                 ************************54 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   3.3e-09     3e-05      40     117 .]      49     136 ..      12     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.3e-09
                 EEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS...............CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  40 vGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg...............nmsAkaaidmAlwDlkakalnlpladLlG 117
                 +G+gea       eti++ l d  + ++ g++ a ++ l+q ++r                      A aa++ Al+Dl+++ l++p+a+LlG
  EHT99311.1  49 TGLGEAP-G---GETIYQTLLD-AVQQVTGQQVACLNRLVQQVHRGNQSadfetfgkgawtfelRVNAVAALEAALLDLLGQCLGVPVAELLG 136
                 5666642.2...4788888887.56788999999999999999998888889999999999999999*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3422.23
//
Query:       EHT99312.1  [L=447]
Description: putative D-glucarate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-59  199.5  44.9    7.2e-51  173.2  25.2    2.0  2  MFS_1      Major Facilitator Superfamily
     0.0081   15.1  45.6      0.012   14.6  18.0    3.7  3  Sugar_tr   Sugar (and other) transporter
  ------ inclusion threshold ------
      0.039   14.1   2.5       0.33   11.1   2.5    2.3  1  DUF2407_C  DUF2407 C-terminal domain
        9.7    4.7   6.9         15    4.1   6.9    1.3  1  Ndc1_Nup   Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2  25.2   1.6e-54   7.2e-51       1     273 [.      25     317 ..      25     325 .. 0.89
   2 !   32.3  12.1   1.1e-11   4.9e-08      60     174 ..     325     437 ..     319     446 .. 0.84

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 1.6e-54
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.....sslw.lllvlr 92 
                 l++++ +++ +r++l++a + a+a+d g++p  +g ++++++++++++++p+G+l drfG++rv++++++l++l+ +ll  f+      ++  +l+ lr
  EHT99312.1  25 LFIVTSFNYGDRTTLSIAGS-AMAKDIGLDPVGMGYIFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFLWSLF-TLLQgFVdlfsgYTIVmALFMLR 121
                 6999****************.******************************************************.666667455546778878***** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 ++ Gl+++ +fp+   ++a+wfp +erg a+++++++  +++++ +++ g+l+s++gW  vf++++++++++ ++ +l +  +p++++ ++++e+e   
  EHT99312.1 122 FMVGLAEAPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYFATVIFAPIMGWLTSAVGWAHVFWFMGGLGIILSLI-WLKVIHDPSDHPGVNQAEREyme 219
                 ************************************************************************996.444468889999999999999** PP

       MFS_1 189 ...........kgtgpaplvp...awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr 273
                            + +++ ++++    +k+ll ++ +  + i+ +++ + ++++ t++p+yl++ +g+s  l ag++ +++al g+i+++l+g +sd l r
  EHT99312.1 220 qggalinmdqkSEKQNVSFRDkrfQIKQLLQSRMMIGIYIGQYCINALTYFFITWFPVYLVQARGMS-ILKAGFVASVPALCGFIGGVLGGVISDWLMR 317
                 ******998885555555555777799999999666677777777778888****************.9************************998654 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 1.1e-11
       MFS_1  60 GrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyil 157
                  r+  ++lg+ll+ ++ +++ ++ + w ++vl + +++++ ++ ++g a++ad +pke  g+  gl++++ +++ i++p++ g+++ s +++ ++ + +
  EHT99312.1 325 ARKTPIVLGMLLSTSM-VICNYVETDW-VVVLFMATAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNASGIITPVAIGYIIaSTGSYNGALVYV 421
                 4666************.6666678999.9999******************************************************5666688888888 PP

       MFS_1 158 aivsllafvlfllllpe 174
                 +i +++a vl +l+l++
  EHT99312.1 422 GIHAFVA-VLSYLVLVD 437
                 8888887.555566655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6  18.0   2.6e-06     0.012     247     433 ..      12     197 ..       2     202 .. 0.71
   2 ?   -0.1   0.1     0.074   3.3e+02      99     121 ..     242     264 ..     231     272 .. 0.80
   3 !    5.3  16.6    0.0016       7.4      46     188 ..     288     435 ..     261     438 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.6e-06
                 HHSH...HHHHHHHHHHHHHHTT..HHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHH...HHHHHS-SHHHHHHHHHHHHHHHHHHH..HHH CS
    Sugar_tr 247 ssktvrqrlligvvlqifqqltG..inaimyysptifenlglsksllvtiivgvvnfvatfvai...flvdrfGRRtllllGaagmaicfvilgivall 340
                 +++t   r  i+v+l i++ +++     + + ++ + +++gl++   +  i+++  ++ ++  i   +l drfG +++++++++  ++++++ g  +  
  EHT99312.1  12 QKRT-NARYWIVVMLFIVTSFNYgdRTTLSIAGSAMAKDIGLDPV-GMGYIFSAFSWAYVIGQIpggWLLDRFGSKRVYFWSIFLWSLFTLLQG--FVD 106
                 4444.5677888888888888752234566778889999999999.445555555544444444444999999999999999999999999998..444 PP

                 HTTSS...CHHHHHHHHHHHHHHH.TTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHH CS
    Sugar_tr 341 lvakskaasivaivfialfialfa.lgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifv 433
                 l ++   ++iv+  f++ f++  a +   p    +v+  fp + R++a ai   ++ +a+++ + ++ ++t+a+g + vf++ +gl ++  ++ 
  EHT99312.1 107 LFSG---YTIVMALFMLRFMVGLAeAPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYFATVIFAPIMGWLTSAVGWAHVFWFMGGLGIILSLIW 197
                 4444...367766666655444440444466778999999999999999999999999999999999999999999999999999998887764 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.074
                 TSS-TGGGGGHHHHHHHHHHHHH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasv 121
                 ++++ +l+ +R+ +Gi++G  ++
  EHT99312.1 242 RFQIKQLLQSRMMIGIYIGQYCI 264
                 478899999999***99997766 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0016
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHH.....HHHHHHHHHHHH-TTTT...SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkksllia.....avlfvigavlqaaakgk...nsvevlivgRvlvGigvGlasvlvPmyisEiApkklR 136
                 +  g+++s+  + ++iG++++g ++d++ Rk + l +     +vl +  +  +++++ +     v vl+++  + G g+G+    v   ++  Apk++ 
  EHT99312.1 288 LKAGFVASVPALCGFIGGVLGGVISDWLMRKTGSLNIarktpIVLGMLLSTSMVICN-YvetDWVVVLFMATAFFGKGIGALGWAV---MADTAPKEIS 382
                 5789999999******************99987664312111233333333334444.2333456677777888888888766654...799******* PP

                 HHHHHHHHHH.HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 137 galvslyqla.itfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 g  ++l++++  + Gi+    +g++++ t++ +g  + +g+ ++ a+l  ++l
  EHT99312.1 383 GLSGGLFNMFgNASGIITPVAIGYIIASTGSYNGALVYVGIHAFVAVLSYLVL 435
                 *******9872567999999******776666999999999999997766554 PP

>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.5   7.3e-05      0.33      93     138 ..     298     342 ..     203     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.3e-05
   DUF2407_C  93 lliGlliGfflglfalllllkeegllnkrqkmaviaGvlvnlvlgl 138
                  l+G++ G++ g+++  +l+++ g ln  +k  +++G+l++ ++ +
  EHT99312.1 298 ALCGFIGGVLGGVIS-DWLMRKTGSLNIARKTPIVLGMLLSTSMVI 342
                 5899999**99**99.***********************9988765 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.9    0.0034        15       2     105 ..      10     166 ..       9     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0034
    Ndc1_Nup   2 vlhrRfvhaallllllsyllslllslsssl.................................................lwswfplgpaglr.alllfl 50 
                 + ++R+++  ++++ l++++s+  +++++l                                                 +ws+f+++ ++l  +++  +
  EHT99312.1  10 AVQKRTNARYWIVVMLFIVTSFNYGDRTTLsiagsamakdigldpvgmgyifsafswayvigqipggwlldrfgskrvyFWSIFLWSLFTLLqGFVDLF 108
                 678999888*****************888899***********************************************99999999966664777777 PP

    Ndc1_Nup  51 sl.lpilvlrkaqlhvgprttssr..lstllaslfslqtletllvyllSallfaevyi 105
                 s+  +++ l +  ++vg   ++s    s ++a+ f+ q   t++++  Sa  fa+v+ 
  EHT99312.1 109 SGyTIVMALFMLRFMVGLAEAPSFpgNSRIVAAWFPAQERGTAVAIFNSAQYFATVIF 166
                 7799999999999999999999995445599999999999999988888885555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3270.35
//
Query:       EHT99313.1  [L=519]
Description: D-galactarate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-143  478.9   0.0   1.2e-143  478.7   0.0    1.0  1  GD_AH_C   D-galactarate dehydratase / Altronate hydrolase, C 
    2.7e-12   47.1   0.7    1.6e-11   44.6   0.1    2.6  3  SAF       SAF domain


Domain annotation for each model (and alignments):
>> GD_AH_C  D-galactarate dehydratase / Altronate hydrolase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.7   0.0  1.3e-147  1.2e-143       2     390 ..     115     516 ..     114     518 .. 0.97

  Alignments for each domain:
  == domain 1  score: 478.7 bits;  conditional E-value: 1.3e-147
     GD_AH_C   2 tfkGYrradgrvGtrNyvlilptvecvnkvaeaiaeavkeel..klpnvdgvvalthqygcgqlg..edaelllrtLaglakhPNvag.vlvlglgcen 95 
                 tf+GYr+adg+vGtrN + i+++v+cv++v++ +++ ++++l  ++pnvdgvval+h ygcg++     a + +rt+++la ++N++g ++v++lgce+
  EHT99313.1 115 TFEGYRNADGSVGTRNLLGITTSVHCVAGVVDYVVQIIERDLlpRYPNVDGVVALNHLYGCGVAInaPAAVIPIRTVHNLALNANFGGeIMVVSLGCEK 213
                 9****************************************9********************99877889999************************** PP

     GD_AH_C  96 lqieelaeeikeade...kpvevltiqes...gtekeieagleaveelleeankakReevplseLvvglkCGgSDgfSGitANPavGaasdllvaaGgt 188
                 lq+e+l++   + ++   + + ++++q++   g+ ++++++l+ +e++l+++n+++Re++p+seLvvg++CGgSD+fSG+tANPavG a+dllv++G+t
  EHT99313.1 214 LQPERLLTGTPDVQPislDDADIVRLQDEsrvGFGAMVDDILQVAERHLSRLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGFAADLLVRCGAT 312
                 ********988777666677779999988888999**************************************************************** PP

     GD_AH_C 189 ailsEtpEliGaehllaeRavneevaekllklikkyeeyakaegadveenpspGNkagGLttieeKSlGaiaKggtspiedVleyaervkkkGlvlldt 287
                 +++sE++E+ +a hll+ R+v+++v ++l++ +++y++y+ + ++d ++npspGNk+gGL +++eK+lG+iaK+g+spi++Vl++++r++++Gl++++t
  EHT99313.1 313 VMFSEVTEVRDAIHLLTPRVVDQAVGQRLIEEMAWYDRYLDQGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGRSPIVEVLSPGQRPTRRGLIFAAT 411
                 *************************************************************************************************** PP

     GD_AH_C 288 pgndlesvtglvAaGanvvlFtTGrGtptgnpvvPviKvatntelaermsddiDvdagrilegeetieelgeellelilrvasGe.ktkaeklg.qeef 384
                 p++d+++ t+++A+G+++ +FtTGrGtp+g p++PviK+at+t+laer++d +D++ag+i++geetie++g++l+ lil++asG+ +t+++++g  +++
  EHT99313.1 412 PASDFVCGTQQLASGITLQVFTTGRGTPYGLPAIPVIKMATRTALAERWHDLMDINAGTIATGEETIEQVGWRLFTLILDIASGRkQTWSDRWGiRNQL 510
                 *************************************************************************************9********99999 PP

     GD_AH_C 385 viwkkg 390
                 ++++ +
  EHT99313.1 511 AVFNPA 516
                 999876 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.1   1.8e-15   1.6e-11       1      62 [.      18      87 ..      18      88 .. 0.93
   2 ?   -3.5   0.0         2   1.8e+04      39      51 ..     333     345 ..     322     346 .. 0.74
   3 ?   -1.1   0.0      0.33     3e+03       8      19 ..     464     475 ..     463     479 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.8e-15
                EEEEEESST..B-TT-BEBTTTEEEECECGG.CCTSCCCGG.......HHHHTTEEESS-B-TT-B-BGGGE CS
         SAF  1 dnVvvAard..ikaGeviteddltlkrpias.hkigllpia.......ygeviGkratrdikaGepvhahnl 62
                dnV+++++   ++aG+++  d+ltl ++i++ hk++l +i+       ygeviG  a rdi+ G+++ ++ +
  EHT99313.1 18 DNVAIVVNSqgLPAGTTF-RDGLTLTEHIPQgHKVALQAIPggqpilrYGEVIG-LAMRDIAQGSWIDESLI 87
                68888887777*******.***********************************.************98765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2
                 HHHHTTEEESS-B CS
         SAF  39 ygeviGkratrdi 51 
                  ++++G+r++ ++
  EHT99313.1 333 VDQAVGQRLIEEM 345
                 6899999998775 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.33
                 STB-TT-BEBTT CS
         SAF   8 rdikaGevited 19 
                  di+aG++ t++
  EHT99313.1 464 MDINAGTIATGE 475
                 59****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3693.18
//
Query:       EHT99314.1  [L=148]
Description: putative flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-21   75.4   0.0    5.8e-21   75.2   0.0    1.0  1  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
       0.18   11.5   0.0        1.3    8.7   0.0    2.3  3  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   6.5e-25   5.8e-21       1     135 [.       6     132 ..       6     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 6.5e-25
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i+ g+ +Gn+  +A++   +l+++g+++++++   + +   +  + +++l++tsT+g+Gd+p++    f++  +        g   ++r+ v++lGd
    EHT99314.1   6 IFVGTVYGNALLVAEEAEPLLQQQGHEVTIFEDPTLADW--QHYASDVALIITSTTGQGDFPDTISGLFHAMQDK------LGHQPTLRYGVIALGD 94 
                   899****************************99999986..55556****************9988444444433......566789********** PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHG CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegdednqeg 135
                   s+yenFc agk++d +l++  a+r++ +l +d + + +
    EHT99314.1  95 SSYENFCGAGKRFDALLQAHQAKRIGDVLLIDATEDPE 132
                   ********************************987544 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00015       1.3       2      41 ..       3      43 ..       2      77 .. 0.82
   2 ?   -0.5   0.0       0.1     9e+02      86      99 ..      67      80 ..      61     100 .. 0.76
   3 ?   -0.8   0.0      0.13   1.2e+03      51      69 ..     129     147 ..     101     148 .] 0.66

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00015
                EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEE...TTT CS
     FMN_red  2 kilvisGSlrkgsntrklaewaaealkeagaevelid...lad 41
                ki +++G++   +n   +ae+a+  l+++g ev++++   lad
  EHT99314.1  3 KIGIFVGTVY--GNALLVAEEAEPLLQQQGHEVTIFEdptLAD 43
                89999***96..************************8677666 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.1
                CE-HHHHHHHHCHT CS
     FMN_red 86 sysgllKnalDrls 99
                ++sgl++++ D l+
  EHT99314.1 67 TISGLFHAMQDKLG 80
                799******99997 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.13
                 HCHGHTCGGSHHHHHHHHH CS
     FMN_red  51 kdlesegqtsddvaellek 69 
                 +d e e++ts++v+++ ++
  EHT99314.1 129 EDPEPESVTSPWVEQWGKQ 147
                 3333448899999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1191.95
//
Query:       EHT99315.1  [L=259]
Description: tRNA U65 pseudouridine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-28   98.9   0.0    3.7e-28   98.6   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.0   2.1e-32   3.7e-28       2     160 .]      11     170 ..      10     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 2.1e-32
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      lv+vnKPag  v++      ++++ ++  + ++ +  +++ + hRLD++tsG+ll++ ssea + l+++fe+++++K+Y a+v+ +  e ++++
       EHT99315.1  11 LVAVNKPAGWLVHRSW---LDRHETRFVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLSQQFEHHHMEKTYHAIVR-GWLEGSDRL 100
                      699*************...****************************************************************8.********* PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgs......seksakvslveleletGrkhQiRvhlaa 160
                      + +++++  ++   ++ +e +  + avt +  l+         ++  a++slvel+++tGrkhQ+R+h+++
       EHT99315.1 101 DYPLVEE-LDKIADKFVSEPRAPQPAVTDYAALATVEmpvaisRYPTARYSLVELKPQTGRKHQLRRHMSH 170
                      ******5.555555556666677889999999999889*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2112.87
//
Query:       EHT99316.1  [L=109]
Description: hypothetical protein CKS_1325 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  111.7   4.0    1.5e-32  111.6   4.0    1.0  1  DUF446    tRNA pseudouridine synthase C


Domain annotation for each model (and alignments):
>> DUF446  tRNA pseudouridine synthase C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   4.0   8.3e-37   1.5e-32       2      98 .]       7     103 ..       6     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 8.3e-37
      DUF446   2 vaelLeeleaeLrelelWqeeapseealastePFavdtlefeqWLqfvfiprmkalieaeapLPakvaiapmaeealkeeeeeaeellellkeldkl 98 
                 ++++Le+lea +re++lWq +ap+e+a+as++PF++dt+++ +WLq+v+ipr+++li+a+++LP+++a+ap++e+al+  +  ++ ll +l++ld+l
  EHT99316.1   7 IMQRLEQLEAVMREHDLWQVDAPDEQAFASQQPFFLDTMQPLEWLQWVLIPRVQMLIRAGQALPKNFAVAPYFEMALTPVQPGRTLLLLTLQQLDAL 103
                 5789******************************************************************************9************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1008.42
//
Query:       EHT99317.1  [L=182]
Description: Syd family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-71  237.5   0.0    8.1e-71  237.3   0.0    1.0  1  Syd       Syd protein (SUKH-2)


Domain annotation for each model (and alignments):
>> Syd  Syd protein (SUKH-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3   0.0   4.5e-75   8.1e-71       2     175 .]       7     179 ..       6     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 237.3 bits;  conditional E-value: 4.5e-75
                 HHHHHHHHHHHHHHHHHHSSS-EESTTTTS--TTEEEE-SS.-EEE--EE--S-SS-HHHHHHCT----HHHHHHCCSEE---EEEEETTEEEEE---- CS
         Syd   2 eaLekfteryveayqeelgelprseeleglpSpcileeeeeeevqWkpvkreeaasldnvekaLeielhpdikafygtqfagdleakleggeleLlqvw 100
                 eaL++ft+ry++++q+++g+ p+s++l+g+pSpc+le+++e  + W+p++++ + sl++ve+aLei l+p+i+afy++qfagd++a +++++l+Llqvw
  EHT99317.1   7 EALTDFTTRYCQHWQQSRGHAPASRDLYGIPSPCLLENRDE-CALWQPQPFTLPPSLEAVERALEIALQPQITAFYTHQFAGDMQAMWQDHRLTLLQVW 104
                 79***************************************.********************************************************* PP

                 SHHHHHHHHHHHHHHHHHHHHTT---EEEEEEESSTTEEEEEETTT--EEEEETTSS-EEEEESSHHHHHHH-EE CS
         Syd 101 needferLqeNligHllmkkrlkqsptlFiavtdeedelvsvdnlsGeVvleqvgkkkrevLadslaefLeeleP 175
                 +e df rLqeNligHl+m++rlkq+ptlFia+t++e++++s++nlsG+++le++g+kkr +La+++ +fL++l+P
  EHT99317.1 105 SETDFVRLQENLIGHLVMQRRLKQNPTLFIATTASEENIISLCNLSGDIILETPGQKKRITLASDICTFLNNLQP 179
                 *************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1653.85
//
Query:       EHT99318.1  [L=281]
Description: NADPH-dependent 7-cyano-7-deazaguanine reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-47  159.9   0.0    9.3e-47  157.9   0.0    1.9  2  QueF_N    Nitrile reductase, 7-cyano-7-deazaguanine-reductase
    2.5e-33  114.1   0.0    1.5e-27   95.5   0.0    2.4  2  QueF      QueF-like protein


Domain annotation for each model (and alignments):
>> QueF_N  Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9   0.0     1e-50   9.3e-47       1     110 []      21     131 ..      21     131 .. 0.98
   2 ?   -1.0   0.0      0.24   2.1e+03      70     102 ..     212     243 ..     196     252 .. 0.67

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 1e-50
                 ------GGG--EEETHHHHHHTT--S.S-S-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEETTSSEEE-HHHHHHHHHTTTT-B-S-HHHHHHHHHHHH CS
      QueF_N   1 YkeeYdpslLfpipRalkrdelglee.elpfvGaDiWtayElswLnakgkpqvaiaelevpaesenliEsksfklYlnsfnqtrfesaeeveetlekDl 98 
                 Y+++Yd+slL+++pR+++r+ lgl   +lpf G DiWt+yElswLn+kg+pqva++e+e++a+s+nliEsksfklYlnsfnqtrf++++ev++tle+Dl
  EHT99318.1  21 YHDRYDNSLLQAVPRSMNREPLGLYPdNLPFSGSDIWTLYELSWLNSKGVPQVAVGEVELDARSRNLIESKSFKLYLNSFNQTRFTDWAEVRQTLEQDL 119
                 99**********************999************************************************************************ PP

                 HHHHTS--EEEE CS
      QueF_N  99 saaagaevkvel 110
                  a+a+++v v+l
  EHT99318.1 120 RACAEGDVLVAL 131
                 ********9975 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.24
                 HHHHHHHHTTTT-B-S-HHHHHHHHHHHHHHHH CS
      QueF_N  70 ksfklYlnsfnqtrfesaeeveetlekDlsaaa 102
                  ++  Y+ sf q++  +  +  e++ +Dl + +
  EHT99318.1 212 EALLRYIVSFRQHNEFHE-QCVERIFNDLMRFC 243
                 556679999998875554.45556667776655 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-06    0.0093      14      34 ..      85     105 ..      76     129 .. 0.74
   2 !   95.5   0.0   1.7e-31   1.5e-27       1      75 [.     195     267 ..     195     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-06
        QueF  14 kkvvelkslklYlisfrnrgi 34 
                 ++++e+ks+klYl+sf +   
  EHT99318.1  85 RNLIESKSFKLYLNSFNQTRF 105
                 469*************88754 PP

  == domain 2  score: 95.5 bits;  conditional E-value: 1.7e-31
        QueF   1 PDfatlvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwlevvgdfnpRGgididvvve 75 
                 PD+++++irY++ +  +++++l++Y++sfr++++fhE++v+ri++dl++ ++P  l+v++++++RGg+di+++++
  EHT99318.1 195 PDWGSVMIRYQGPR--IDREALLRYIVSFRQHNEFHEQCVERIFNDLMRFCQPSQLTVYARYTRRGGLDINPWRS 267
                 9*************..********************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2314.01
//
Query:       EHT99319.1  [L=454]
Description: putative lysine decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-57  192.6   0.0    3.3e-57  191.8   0.0    1.4  1  DUF3412          Domain of unknown function (DUF3412)
    4.8e-47  158.3   0.1    1.3e-46  157.0   0.1    1.8  1  DUF4478          Pyrimidine/purine nucleotide 5'-monophosphat
    5.7e-33  113.8   0.0    9.2e-33  113.1   0.0    1.3  1  Lysine_decarbox  Possible lysine decarboxylase
    1.5e-06   27.9   0.0    2.8e-06   27.0   0.0    1.4  1  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> DUF3412  Domain of unknown function (DUF3412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.0   7.3e-61   3.3e-57       1     121 []     333     453 ..     333     453 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 7.3e-61
     DUF3412   1 lkevkearketedaysfnwslkieeelqepfepthenmanLnLsrdqekeeLaanLRraFsgivagnvKeegikaieekgpfklkgdkellkkldkllk 99 
                 + +vke+r+et+daysfnws++i+++lq pf pthenmanLnL+++q++e+Laa+LRraFsgivagnvKe gi++i+ekgp+kl+gd+++++++d+ll+
  EHT99319.1 333 MPQVKEHRRETGDAYSFNWSMRIAQDLQVPFMPTHENMANLNLYTNQAPEKLAADLRRAFSGIVAGNVKEMGIREIREKGPYKLHGDADIMHRMDELLQ 431
                 789************************************************************************************************ PP

     DUF3412 100 sfveqkRmklpgsayepcYeiv 121
                  fv+q+Rmklpg+ay pcYei+
  EHT99319.1 432 GFVAQQRMKLPGTAYIPCYEII 453
                 ********************95 PP

>> DUF4478  Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.1   2.8e-50   1.3e-46       2     108 ..       4     110 ..       3     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 2.8e-50
                 EE--SSS-----HHHHHTTSTSSSCHHHHHHHHHHHHHHTTT----SSSTTCGTTTT-EEEEEEETTEEEEEEES--GGGEETTEE-HHHHHHHHHHHH CS
     DUF4478   2 kispkgslellsqleverlkdsseselyelfRncalavLnsgsetDdskellekykdFdikvlqkerGiklelknaPasafvdgklirgikehlfavlR 100
                 ++sp gs++llsqlev++lk++++s+ly+lfRnc+lavLnsgs+tD+s+ell+++++Fdi+vl++erG+klel+n+P++afvdg++ir+++ +lfavlR
  EHT99319.1   4 HVSPLGSMDLLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSQTDSSHELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRSLQANLFAVLR 102
                 79************************************************************************************************* PP

                 HHHHHHCT CS
     DUF4478 101 Dilyveee 108
                 Dil+v+ +
  EHT99319.1 103 DILFVNGQ 110
                 ****9865 PP

>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   2.1e-36   9.2e-33       1     132 []     190     329 ..     190     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 2.1e-36
                      HHHHHHHHH..HTTS-.....EEEEEECCHHHHHCCTTT-SEEEEESSHHHHHHHHHHHESEEEE-S-SHHHHHHHHHHHHHHHTTSS...-S. CS
  Lysine_decarbox   1 meavakgal..eaggr.....viGiipkillaeeapneevnelvivedmeeRkealveladafvilPGGiGTleElleiltliqlgkh...qkv 84 
                      mea++kga+  +a++r     +iG+++++++a+e pn+ vnel+i++d+e+R+ea+v+ a++++i+PGG+GT+eE+l++l+ i ++++   q +
       EHT99319.1 190 MEAPMKGAAvgHAQQRyrdsrFIGLTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEEFLYLLG-ILMNPQnahQVL 282
                      999***999888888899999************************************************************.66666557799* PP

                      EEEEEEGGG...CCHHHHHHHHHHHHTTSS-GGGGG.CEEEESSHHHHHHHH CS
  Lysine_decarbox  85 Piillnpkg...yydkllefletlveegtisekare.liivvddpeevlekl 132
                      P+il++pk+   y++ l++f+       t++e+ar+ + i++dd++ev++ +
       EHT99319.1 283 PLILTGPKEsadYFRVLDDFI-----VSTLGEQARKhYQIIIDDAAEVARLM 329
                      ********99***********.....89********9***********9875 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.3e-10   2.8e-06      11     114 ..     158     266 ..     149     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.3e-10
  LDcluster4  11 eteakeealelaeelGrliAkegavlltGgrtGvmeaaskG.......akeagGltvGilpas.sekehsnk.yvdiiiyTGlglagRnlilvlssdvv 100
                 +  ++  +++ ++++G  +  +++++ tG  +Gvmea  kG        + ++   +G++  s  + e  n+ + ++ii+ +++ + R    v+ ++ +
  EHT99319.1 158 S--INAVEYQYCRNVGTQLGLRELNICTGCGPGVMEAPMKGaavghaqQRYRDSRFIGLTEPSiIAAEPPNPlVNELIIMPDIE-K-RLEAFVRIAHGI 252
                 4..44445899******************************77777555668899****96640445555555559******99.4.999********* PP

  LDcluster4 101 iaiggrsGTlsEia 114
                 i+ +g++GT++E+ 
  EHT99319.1 253 IIFPGGVGTAEEFL 266
                 ************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3918.49
//
Query:       EHT99320.1  [L=252]
Description: Ssb-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-29  100.4   0.0    1.3e-28   99.9   0.0    1.3  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
    4.8e-23   81.6   0.0    7.9e-23   80.9   0.0    1.3  1  5_3_exonuc    5'-3' exonuclease, C-terminal SAM fold
     0.0032   17.5   0.0     0.0085   16.2   0.0    1.7  2  HHH_2         Helix-hairpin-helix motif
     0.0076   16.8   0.0      0.021   15.4   0.0    1.7  1  HHH_5         Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   2.9e-32   1.3e-28       2     147 ..       5     147 ..       4     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 2.9e-32
  5_3_exonuc_N   2 llLiDgsslifRayyallttsdgeptnavygflnmllklleeekpthlavvfD.a.kkktfRhelypeYKanReetpeelkeqlplikevlealgik 96 
                   ll++D+ +li R +       +g p   v +++ +l +ll +++pth+++vfD + +++ +Rh+l+p+YK+ R+++p++l++++p +k++++++g++
    EHT99320.1   5 LLIVDALNLIRRLHAV-----QGSP--CVDSCVGALRQLLGHTRPTHVVAVFDgEaRHQGWRHQLLPDYKSGRPPMPDDLQAEMPALKDAFRNAGVS 94 
                   7899999999988775.....5665..4688999999****************5456889************************************* PP

  5_3_exonuc_N  97 vlevegyEADDvigtlakr.aee.egvvivsgDkDllQlvednvrvldvkkee 147
                   ++ +++ EADD+ +tla + a++ ++ +ivs+Dk ++Ql+ +++r+ d  +++
    EHT99320.1  95 CWIADQDEADDLAATLAVKmAQAgHQATIVSTDKGYCQLLAPTIRIRDYFQKR 147
                   *******************5554355**************9999999833333 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   1.8e-26   7.9e-23       1      91 [.     160     249 ..     160     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.8e-26
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeearlskkLatiktdvpleleledlkl 91 
                 v+P+ ++d+++L+G ss +ipG++giG+k A +Ll+++gsle+++++ld++ + k+++kL++++e+a +s+++a++k+d+ le +l+ l++
  EHT99320.1 160 VAPALLPDYWGLCGISSSKIPGIAGIGPKSARELLQQFGSLESLYQQLDQVPT-KWRNKLQAGQEMALISRDVARLKQDLVLEGNLNLLRY 249
                 7899**********************************************997.**************************99988887665 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   1.1e+04      51      59 ..     140     148 ..     139     149 .. 0.82
   2 !   16.2   0.0   1.9e-06    0.0085       7      31 ..     181     205 ..     179     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
       HHH_2  51 ivefFenek 59 
                 i+++F++ +
  EHT99320.1 140 IRDYFQKRW 148
                 89***9876 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.9e-06
       HHH_2   7 GIrhVGektAklLakrFksldaLkk 31 
                 GI  +G k A++L ++F+sl+ L +
  EHT99320.1 181 GIAGIGPKSARELLQQFGSLESLYQ 205
                 999******************9976 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.6e-06     0.021       6      31 ..     181     205 ..     177     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
                 TSTT--HHHHHHHHTTT--SHHHHHH CS
       HHH_5   6 svsGiGpktAlallsaGiesvedlaa 31 
                 ++ GiGpk A+ ll + ++s+e l +
  EHT99320.1 181 GIAGIGPKSARELLQQ-FGSLESLYQ 205
                 689*************.*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2064.23
//
Query:       EHT99321.1  [L=366]
Description: putative methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-31  108.1   0.4      5e-31  107.0   0.4    1.6  1  RlmM_FDX  RlmM ferredoxin-like domain
    2.1e-09   37.7   0.0    8.4e-09   35.8   0.0    1.9  2  FtsJ      FtsJ-like methyltransferase
     0.0025   17.7   0.0     0.0051   16.7   0.0    1.5  1  Spt5-NGN  Early transcription elongation factor of RNA pol II
  ------ inclusion threshold ------
      0.046   13.3   0.0        1.3    8.7   0.1    2.5  2  DUF4222   Domain of unknown function (DUF4222)
       0.19   11.7   0.0       0.46   10.5   0.0    1.5  2  MIT_C     Phospholipase D-like domain at C-terminus of MIT


Domain annotation for each model (and alignments):
>> RlmM_FDX  RlmM ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.4   1.4e-34     5e-31       1      71 []       1      71 [.       1      71 [. 0.99

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 1.4e-34
    RlmM_FDX  1 MsslllycRaGFEkdcAaElqekaaelevaGyvkakknsgyvlfeleeaeaaeellkkldlkeliFaRqll 71
                M+++llycRaGFEk+cAaE+++kaae +v+G++++k+++gyvlfe++++++ae+l+++l++ +liFaRq+l
  EHT99321.1  1 MNKVLLYCRAGFEKECAAEISAKAAERNVYGFPRVKEDAGYVLFECYQQSDAERLIRELPFDQLIFARQML 71
                99*******************************************************************97 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.54     2e+03     122     151 ..      94     123 ..      79     125 .. 0.88
   2 !   35.8   0.0   2.3e-12   8.4e-09       3      61 ..     186     251 ..     184     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.54
                 CCCCECCCEEEECCCHCCCHHHHHHHHHCC CS
        FtsJ 122 lkllkpggtfvlkifrgeeteallkqlkkf 151
                 + ++++gg + +++ +  e+++l ++++kf
  EHT99321.1  94 SGVVEKGGELRVEVPDTNEAKELTRFCRKF 123
                 67899***********99999999999986 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 2.3e-12
                 CCHHHHHHHHHHHHT.......-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH...T CS
        FtsJ   3 sRsayKLleidekfk.......lfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl...p 61 
                 sRs +KL+e+ + f         +  g+ +vDlga+PGgw+  l+qr     +v+avD +pmap     
  EHT99321.1 186 SRSTLKLEEAFHVFVpadewdeRLASGMYAVDLGACPGGWTYQLVQRS---MMVYAVDNGPMAPSlmeT 251
                 8999**99998877522222223345577******************3...89*********7754333 PP

>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0051       7      66 ..       8      61 ..       4      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
    Spt5-NGN  7 ctagqErevalslmkkilelakkenleIkSvfapdelkGyiyvEAdrkaaveralegipn 66
                c+ag E+e a+++++k    a+++  +++    ++e  Gy++ E  +++++er+++++p 
  EHT99321.1  8 CRAGFEKECAAEISAK----AAER--NVYGFPRVKEDAGYVLFECYQQSDAERLIRELPF 61
                9************999....4554..59****************************9985 PP

>> DUF4222  Domain of unknown function (DUF4222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.058   2.1e+02      28      42 ..       6      20 ..       2      22 .. 0.86
   2 ?    8.7   0.1   0.00035       1.3       3      22 ..     336     355 ..     334     357 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.058
     DUF4222 28 tFrRdGYehpcvapl 42
                 + R G+e +c+a +
  EHT99321.1  6 LYCRAGFEKECAAEI 20
                599********9977 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00035
     DUF4222   3 iqpgdiYrDkrGvvVkvisv 22 
                 i+ +++Y+D+  v+V+++++
  EHT99321.1 336 IRARQLYHDREEVTVHIRRI 355
                 7889*************986 PP

>> MIT_C  Phospholipase D-like domain at C-terminus of MIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   6.7e+03      57      85 ..     111     140 ..      88     144 .. 0.59
   2 ?   10.5   0.0   0.00013      0.46      60      96 ..     311     347 ..     281     357 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
       MIT_C  57 edeeeedeqkenle.elkesleklgielev 85 
                 ++++e ++  ++++  l++sl++ +i l++
  EHT99321.1 111 NEAKELTRFCRKFTvPLRASLRESKILLNY 140
                 444444444444431366666666666665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
       MIT_C  60 eeedeqkenleelkesleklgielevefsstihdrei 96 
                 ++ +e+++nl+++++ l++ g++ +++ ++  hdre 
  EHT99321.1 311 KRYEEVTQNLAMIEQRLNENGVNAQIRARQLYHDREE 347
                 4457899****************************84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2768.53
//
Query:       EHT99322.1  [L=114]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-18   66.0   7.1    3.3e-18   65.7   7.1    1.1  1  DUF423    Protein of unknown function (DUF423)


Domain annotation for each model (and alignments):
>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   7.1   1.8e-22   3.3e-18       1      80 [.      20      98 ..      20     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.8e-22
      DUF423  1 lGAfgaHglkkkleekalesfetavqYqlyhalallavallaskaaasrllklagllflaGivlFSgslyllaltgkkvl 80
                +GAfgaH l+k+l ++++++++t+ +Yq yh+la+l+++++ +    + ++ ++ + +++G+vlFSgsly lal++ +++
  EHT99322.1 20 FGAFGAHVLNKTLGATEMAWIHTGLEYQAYHTLAVLGLGAA-MLYRCNIWFYWSSASMALGTVLFSGSLYSLALSHLTFF 98
                6*********999999************************9.5577899*************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 919.75
//
Query:       EHT99323.1  [L=305]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-38  132.4   0.2    2.1e-38  131.8   0.2    1.3  1  LysR_substrate  LysR substrate binding domain
      1e-21   76.6   1.8    1.8e-21   75.8   1.8    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.054   13.3   0.3       0.11   12.4   0.3    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.2   3.5e-42   2.1e-38       3     208 ..      91     292 ..      89     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 3.5e-42
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE. CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv. 96 
                     + +g L+++  p++a ++l+p+l++f  +yP++++++++ d  + +++la+  +D+ai +g+ +++gl++++L+ e l++v+sp+    ++ p+ 
      EHT99323.1  91 SAKGALTVSLLPSFAIQWLVPRLSSFNLAYPGIDVRIQAVD--RDEEKLADD-VDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPSL-MTGENPLk 181
                     57899************************************..*********.********************************8.888***** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                     ++ dLa+++l++     + r+ +++  r++g++    +++  +++ +++l+++ +G G+al+ + +++ e+++grl+  p+ +  ++  ++ylv+
      EHT99323.1 182 TPMDLARFTLLH----DASRRDWQAYIRQSGVQHinvQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLI-CPFNDVLVSkNAFYLVC 271
                     ************....889999999999997777777****************************************.***************** PP

                     ETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflreal 208
                     + ++    +++af++++++++
      EHT99323.1 272 HDSQAELGKIAAFRQWILAKA 292
                     *****************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   1.8   3.1e-25   1.8e-21       1      60 []       8      67 ..       8      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 3.1e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr+f+a a++ sft+AAeeL ++q+avs+qik+LE+ lg +Lf R +r+l LTe+G+
  EHT99323.1  8 LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67
                789*********************************************99*********8 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   1.8e-05      0.11      12      53 ..      20      61 ..       9      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHH CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaL 53
                + + +++A++L+v    +++ ++ +e+ lgl l + ++r  L
  EHT99323.1 20 HLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLL 61
                57899***************************9988888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2717.86
//
Query:       EHT99324.1  [L=73]
Description: uncharacterized DUF903 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-26   91.7   2.1    2.2e-26   91.5   2.1    1.1  1  DUF903     Bacterial protein of unknown function (DUF903)
  ------ inclusion threshold ------
      0.061   13.0   0.1      0.086   12.5   0.1    1.3  1  Lysis_col  Lysis protein
       0.12   12.4   0.1       0.13   12.3   0.1    1.3  1  Pirin      Pirin


Domain annotation for each model (and alignments):
>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   2.1   3.7e-30   2.2e-26       1      49 []      23      71 ..      23      71 .. 0.99

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 3.7e-30
                EEEEEETTS-EEEEES--EE-TTTSCEEEEBTTS-EEEEEGGGEEEEEE CS
      DUF903  1 pyvittkDGqtivtdgkPelDkdtGmyeYeDeeGkevqInkddVkqike 49
                +yv++t+DG+tiv++gkP++D+dtGm++Y+D++G+e+qIn++dVk+++e
  EHT99324.1 23 NYVMHTNDGRTIVAEGKPRVDTDTGMISYKDANGNEQQINRSDVKEMVE 71
                7**********************************************98 PP

>> Lysis_col  Lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.4e-05     0.086       7      33 ..       5      31 ..       1      36 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
   Lysis_col  7 vflFilifsifLLvACQvNyvRDvqGG 33
                  + ++    f L+AC  Nyv  ++ G
  EHT99324.1  5 AAMLAVCTMAFTLAACSSNYVMHTNDG 31
                4567888889***********988766 PP

>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.1e-05      0.13      60      82 ..      47      69 ..      14      72 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
                SEEEEEETTS-EEEEETT-EEEE CS
       Pirin 60 GevehrDslGnkgvirpGdvqwm 82
                G ++++D +Gn+++i+  dv+ m
  EHT99324.1 47 GMISYKDANGNEQQINRSDVKEM 69
                99******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 564.21
//
Query:       EHT99325.1  [L=402]
Description: cysteine sulfinate desulfinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.1e-137  455.9   0.0     1e-136  455.8   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.018   14.3   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
      0.021   13.4   0.0      0.034   12.7   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.034   14.7   0.1       0.14   12.7   0.1    2.1  1  MccV             Microcin V bacteriocin
      0.041   12.9   0.0      0.066   12.2   0.0    1.2  1  SelA             L-seryl-tRNA selenium transferase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.8   0.0  2.9e-140    1e-136       1     371 []      21     388 ..      21     388 .. 0.99

  Alignments for each domain:
  == domain 1  score: 455.8 bits;  conditional E-value: 2.9e-140
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteae 97 
                  +yldsaAtt kpq+V++a+q++y+ +++ vhrs+  ++ ++t+++e+ar +va+++na+s+ +i++t+Gtteainlva+s+++  l+pgdei+v+eae
   EHT99325.1  21 VYLDSAATTLKPQAVIEATQQFYSLSAGTVHRSQFAAARRLTEQYEQARGQVAQWLNAASDRQIVWTRGTTEAINLVAQSWLAPrLQPGDEILVSEAE 118
                  7********************************************************************************999************** PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                  hhanlvpw ++a++tga+v+++p+ e+ + d+  l +l++++t+l+a+ ++snvtG + ++ + ++la+++ga v+vD+aq+v+h p dv++l++Df+
   EHT99325.1 119 HHANLVPWLMVAQATGARVVKWPIGEDRLPDIAVLPSLITHRTRLLALGQMSNVTGGCPDLSRAIALAHAAGAKVMVDGAQGVVHCPPDVQALDIDFY 216
                  ************************************************************************************************** PP

                  EEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 196 afsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                  afsghKl+gP GiGvly++ elle++ p+++gg+m+++v++ + t +  p++feaGTpnvag+ gl+aal +l++ +++++e  +++la+ ++e+l++
   EHT99325.1 217 AFSGHKLYGPMGIGVLYGKAELLEEMAPWQGGGKMLTKVDFTGFTPQPVPWRFEAGTPNVAGVTGLSAALSWLQQHNMSKAEIWSQQLASLAEEQLAE 314
                  ************************************************************************************************** PP

                  STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 294 lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  lpg+r +     + +as+++f ++g+h++d++tlL+e+gIa+r+G+hcaqplm+ l++egt+R+S++ yn  ++vd+l
   EHT99325.1 315 LPGFRSFR----CGQASLLAFDIQGIHHSDIVTLLAEHGIALRAGQHCAQPLMAALGVEGTLRVSFAPYNNLQDVDAL 388
                  ******88....79**************************************************************97 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.1e-06     0.018      68     215 ..     106     239 ..      54     349 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.1e-06
                      --TTEEEEEETT.-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHC CS
  Beta_elim_lyase  68 lqrgeevivtep.ahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakky 160
                      lq+g+e++v+e   h        +a+  g+++++ ++ e+   d++ l ++i++      +++l+ l +  n++gG +     l ++ a+a++ 
       EHT99325.1 106 LQPGDEILVSEAeHHANLVPWLMVAQATGARVVKWPIGEDRLPDIAVLPSLITH------RTRLLALGQMSNVTGGCP----DLSRAIALAHAA 189
                      489999999998455555666999999************9999***********......589**********99976....799999****** PP

                      T-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-.EEEEE-HH.. CS
  Beta_elim_lyase 161 giplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvG.gvlafrddel 215
                      g ++++DgA  +     + +++   +  +D   +s+ K l  ++G gvl ++ + l
       EHT99325.1 190 GAKVMVDGAQGV-----VHCPPDVQALDIDFYAFSGHK-LYGPMGiGVLYGKAELL 239
                      ********9654.....666777778888999999988.46789988888888833 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.5e-06     0.034     127     175 ..     150     198 ..      96     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.5e-06
                      HHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 127 leelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDnt 175
                      ++ l + i+++t+l+ l  ++n +  ++D+ + ++la++ag+ v+vD +
       EHT99325.1 150 IAVLPSLITHRTRLLALGQMSNVTGGCPDLSRAIALAHAAGAKVMVDGA 198
                      556778899**************************************75 PP

>> MccV  Microcin V bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.9e-05      0.14       3      47 ..     163     207 ..     161     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
        MccV   3 eltlkeldsvsGagddsgrdiakgigaaagtfvaGaiGaivggiv 47 
                  l+l ++++v+G   d  r ia + +a+a  +v Ga G + +++ 
  EHT99325.1 163 LLALGQMSNVTGGCPDLSRAIALAHAAGAKVMVDGAQGVVHCPPD 207
                 678899******99***************************9874 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05     0.066     176     234 ..     188     243 ..     179     248 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
                 EEES-B-S-GGGGT-----BHHHHHHTT-SEEEEETTSTT-SSS-EEEEE-HHHHHHHH CS
        SelA 176 DlGsGllvdlseyglskePtvqealaeGvdlvsfsGDkllGgpqaGiivGkkelieklk 234
                  +G+ ++vd ++  ++  P vq+     +d  +fsG kl+G    G++ Gk el+e++ 
  EHT99325.1 188 AAGAKVMVDGAQGVVHCPPDVQA---LDIDFYAFSGHKLYGPMGIGVLYGKAELLEEMA 243
                 56666677766666666676664...4689**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3276.75
//
Query:       EHT99326.1  [L=149]
Description: SufE family iron-sulfur cluster assembly sulfur acceptor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-40  137.3   0.0    2.6e-40  137.1   0.0    1.0  1  SufE      Fe-S metabolism associated domain


Domain annotation for each model (and alignments):
>> SufE  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   1.4e-44   2.6e-40       2     121 ..      22     142 ..      21     143 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 1.4e-44
                 HHHHHSSSHHHHHHHHHHHHHTS----CCCCCCCEEECTSSSEEEEEEEEETTS.EEEEEEESSHHHHHHHHHHHHHCTTEECCCCTCC-TCHHHHHTT CS
        SufE   2 eefsllddweeryrylielgkklpplpeelkteenkvkGCqsqvwlaaeledgk.lkfeadsdarivkGllalllevlsgktpeeilavdledfleelg 99 
                 e+fs++++we+ryr+li lg++lp+lp++lkt++ + +GC+++vwl  ++++++ l+f++ds+ riv+Glla+ll++++g+tp+++la+d+ d++e+lg
  EHT99326.1  22 ETFSHCRQWEDRYRQLILLGRQLPALPDALKTPDSELSGCENRVWLGSQIREEGsLHFYGDSEGRIVRGLLAVLLTAVEGQTPAQLLAADPLDLFESLG 120
                 78************************************************99878******************************************** PP

                 SHHHHCHHHHHHHHHHHHHHHH CS
        SufE 100 lsehlspsRsnGlaamlkrika 121
                 l+++ls sRs+Gl+a+   +++
  EHT99326.1 121 LRAQLSASRSSGLKALADAVQQ 142
                 ****************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1156.39
//
Query:       EHT99327.1  [L=266]
Description: ThiF family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-38  132.4   0.7    2.2e-38  132.0   0.7    1.2  1  ThiF             ThiF family
    0.00011   22.5   1.3     0.0006   20.1   1.3    2.0  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0025   18.2   0.0     0.0064   16.9   0.0    1.6  1  NAD_binding_7    Putative NAD(P)-binding
     0.0061   16.2   0.1      0.024   14.2   0.1    1.8  2  DAO              FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.011   15.3   2.0      0.033   13.8   2.0    1.7  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.013   15.8   0.7      0.085   13.1   0.4    2.1  1  TrkA_N           TrkA-N domain
      0.046   13.6   0.0      0.084   12.8   0.0    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.076   12.7   0.0       0.12   12.1   0.0    1.4  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.7     1e-41   2.2e-38       9     206 ..      20     256 ..      10     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 1e-41
                 HHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   9 gedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleell 107
                 g+  ++  +d++++++G+Gg+Gs+++++L+++G+g++tl+D+D + ++N+nRq+ +++ ++Gk+K++v+ae+l++inpd+ev  + + it+e+ +  l 
  EHT99327.1  20 GQSALQHFADAHFCVIGIGGVGSWAAEALVRTGIGRITLIDMDDVCITNTNRQIHAMSGNVGKAKTDVMAERLRAINPDCEVICIDDFITPENTATLLT 118
                 5577888999*********************************************************************************88778999 PP

                 TT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEE.................................ECCS-ECTSS-.......T. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxx.......x. RF
        ThiF 108 esvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvii.................................pgktgcyeCld.......p. 165
                  ++D+V+da+D++  + ++   c++++ipli++g +g + + + i                                        ++C +       p 
  EHT99327.1 119 ADIDYVIDAIDSVRPKAALIAWCRRNKIPLITTGGAGGQIDPTQIQvtdlaktiqdplaaklrerlkqlgvvknskgklG-----IDCVFstealvyPq 212
                 ********************************999998888888743455666666666666666655555554322220.....22222333443313 PP

                 ......GGS.EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHHHHHHH CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 166 ......sstedptekkvplctsiagnipaiatttavvaglaalellk 206
                       +s  ++++ k + c+s  g   a   +ta ++ +a+ ++lk
  EHT99327.1 213 adgsvcASRSTAEGPKRMDCESGFG---AATMVTATFGFVAVSHALK 256
                 4444455556666666666644555...5566677777777777776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   1.3   2.7e-07    0.0006       2     100 ..      33     152 ..      32     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.7e-07
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....................TTTCEEEEE--TTTHHHHHHHHHTTS.SEE CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.....................lgvrfeaialdaenyeavLaallkeg.dlv 73 
                       +iG G+vG+ +ae l+r++    +it++d ++    ++  ++                      ++++e i +d    ++ +a ll+   d v
       EHT99327.1  33 CVIGIGGVGSWAAEALVRTGIG--RITLIDMDDVCITNTNRQIhamsgnvgkaktdvmaerlraINPDCEVICIDDFITPENTATLLTADiDYV 124
                      59*****************955..***********9999999999**************99988777788888888888888999998889*** PP

                      EE-SSGG.GHHHHHHHHHHHT-EEEESS CS
  Sacchrp_dh_NADP  74 vnlsppi.ssldvlkaCietgvhyvdts 100
                      ++++ ++   ++++++C+++++  ++t 
       EHT99327.1 125 IDAIDSVrPKAALIAWCRRNKIPLITTG 152
                      *******7788**************964 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.9e-06    0.0064       5      89 ..      27     148 ..      24     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.9e-06
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleag.akvtvvapev..keele.....................elvklaeeelekd.................. 58 
                    + + + +v+G G v+   ++ l+++g  ++t+++ +      ++                     e                              
     EHT99327.1  27 FADAHFCVIGIGGVGSWAAEALVRTGiGRITLIDMDDvcI--TNtnrqihamsgnvgkaktdvmaE-----------Rlrainpdceviciddfit 109
                    7899**********************889****9997441..223333444554444433333332...........0333333344445445566 PP

  NAD_binding_7  59 ........legadlviaatddrelneriaeaakarrilv 89 
                             +++d vi a+d    ++++ +++++++i++
     EHT99327.1 110 pentatllTADIDYVIDAIDSVRPKAALIAWCRRNKIPL 148
                    5666776677799********************999986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.1e-05     0.024       1      33 [.      31      65 ..      31     100 .. 0.84
   2 ?   -0.1   0.0      0.25   5.6e+02      35      84 ..     149     206 ..     113     263 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekgdiag 33
                + ++iG G +G+++A +L r g   +tl++++ +++
  EHT99327.1 31 HFCVIGIGGVGSWAAEALVRTGigrITLIDMD-DVC 65
                689***************999888*******9.544 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.25
                 SGGGSSEEEEESSS...STHHSTHHHHHHHHHHHHHHHHHH......HHHSSTTSEEEE CS
         DAO  35 gaSgrnsgllhsgl...rylpeaselarlslealeelrele......eelgididyrrt 84 
                  ++g+++g++ +      +l++   + +l++ ++e+l++l       ++lgid+ +   
  EHT99327.1 149 ITTGGAGGQIDPTQiqvTDLAKT-IQDPLAAKLRERLKQLGvvknskGKLGIDCVFSTE 206
                 57777888887755666444443.22377777776666666555555556666666544 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.0   1.5e-05     0.033       3     109 ..      32     133 ..      30     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                     EEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-.----B-T.TTTC CS
  UDPG_MGDP_dh_N   3 isviGlGYvGlvtaavlaeig.hevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifia.VgTPskk.kgka 94 
                      +viG G vG   a +l + g   ++++D+d+  + + n++ i+ +  +  +  ++++ ++rl++ +       +++vi i    TP ++ +  +
      EHT99327.1  32 FCVIGIGGVGSWAAEALVRTGiGRITLIDMDDVCITNTNRQ-IHAMSGNVGKAKTDVM-AERLRAIN------PDCEVICIDdFITPENTaTLLT 118
                     69*******************669*************9975.5666666666555555.45555433......3566665532458888855567 PP

                     B-THHHHHHHHHHHH CS
  UDPG_MGDP_dh_N  95 aDlkyvesaarsiae 109
                     aD++yv +a++s+ +
      EHT99327.1 119 ADIDYVIDAIDSVRP 133
                     899999999999876 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   3.8e-05     0.085       1      49 [.      32      80 ..      32     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                EEEES-SHHHHHHHHHHHHTT.EEEEEEESSHHHHHHHHHTTSEEEES-T CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg.kdvvvidkdeerveelreeglevvvgda 49
                + +iG G vG+  ae L + g  ++++id d +++ + +++ ++++ g++
  EHT99327.1 32 FCVIGIGGVGSWAAEALVRTGiGRITLIDMD-DVCITNTNRQIHAMSGNV 80
                579****************55556******9.567776777777776664 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.084       3      69 ..      33      97 ..      31     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
                EEE--SCCHHHHHHHHHHTT-.EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEE CS
     3HCDH_N  3 aviGaGtmGagiaavfasagl.eVvlvdiseealekalekieksleklvekgklkeeeveaalarisf 69
                 viG G +G+  a++++++g+ +++l+d+++  +++ +++i++   +    gk+k++ ++++l  i++
  EHT99327.1 33 CVIGIGGVGSWAAEALVRTGIgRITLIDMDDVCITNTNRQIHAMSGN---VGKAKTDVMAERLRAINP 97
                59******************978*******************83333...345555566666666554 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.4e-05      0.12      22      80 ..      19      77 ..      14     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
                   HHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHH CS
  ELFV_dehydrog 22 lkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieell 80
                   + + +l++++++++ + G G vgs+aa+ l + g   ++++D + v + ++  +i+++ 
     EHT99327.1 19 YGQSALQHFADAHFCVIGIGGVGSWAAEALVRTGIGRITLIDMDDVCITNTNRQIHAMS 77
                   5566778899********************************99998888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2318.04
//
Query:       EHT99328.1  [L=382]
Description: membrane-bound lytic murein transglycosylase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-43  149.6   1.4    2.5e-42  145.2   1.3    2.2  1  MltA      MltA specific insert domain
    7.6e-24   83.7   0.1    1.4e-23   82.8   0.1    1.5  1  3D        3D domain


Domain annotation for each model (and alignments):
>> MltA  MltA specific insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   1.3   2.8e-46   2.5e-42      35     225 .]      87     259 ..      55     259 .. 0.84

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 2.8e-46
                 .....SHHHHHHHHHHCCEEEEECCCG.EEEEEEEEE-EEEEESS--SSS-EEEEB--TTEEEEETTTGGTTTEEEEEEETTEEEE---HHHHCTSTTT CS
        MltA  35 l..asksaeaaraffeeeftpyrvegk.eglvTGYYepllegsrtrtaeyrvPlyrrPadlvtvdlfpelkgkrlrgrlegrklvpyptRaeieaegal 130
                 +  a  +++++r+f  + f++    +  +  +TGYY p+++++ tr++e+++P+yr+P+                      ++ ++ p+Ra+i + gal
  EHT99328.1  87 WlmAGGDTRQLRQFGLNAFQMEGTDNYgNVQFTGYYTPVVQARYTRQGEFQYPIYRMPPR---------------------KRGQKLPSRASIYS-GAL 163
                 2345666778999999999988886656669***************************95.....................3556679******9.899 PP

                 TTSS.ECEEES.HHHHHHHHHHTEEEEE-TTS-EEE.EEEEEE-S-----CHHHHHCTT-S-TTT--HHHHHHHHHCT.CHHHHHHHTT----EEEE CS
        MltA 131 kgkklelawlkdpvdafflqvQGSgrlrlpdgsvlr.vgYagknghpYtsiGrlLiergelkkeeasmqairawlran.peeldellnenpsyvFFr 225
                 +++   +aw ++ +d f++ vQGSg + + dg+ ++  gY gkng+ Y+siG++Li+rge+k+e++smqair+w++++ pee+++ll++nps+vFF+
  EHT99328.1 164 DDRY-VIAWSNSLIDNFIMDVQGSGYVDFGDGRPMSfFGYGGKNGWGYHSIGKELIDRGEVKREDMSMQAIRQWAEEHsPEEVRALLETNPSFVFFK 259
                 8877.8**************************9987369************************************66549****************7 PP

>> 3D  3D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.1   1.6e-27   1.4e-23       2      75 .]     279     356 ..     278     356 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.6e-27
                 EEEE-TTTS-TT-EEEEEECCEET..TT...CCEEEEEEEEE--TT--SSEEEEEEEESHHHHHHHHTSEEEEEEEEEE CS
          3D   2 siAvDpsviplGtpvlvegeplla..gk...kpvyrlviaqDtGgaIkGnriDlffgtgdeagelaGlvkkegkvyiLl 75 
                 s+A D+s+ip Gt++l e+ p+l+  gk   k+++r+++a+D+GgaIkG+++D++ g g +a +laG ++++g+v++L+
  EHT99328.1 279 SVASDRSLIPAGTVLLAEV-PQLNekGKfngKYEMRVMVALDVGGAIKGQHFDIYQGVGPDAAHLAGFYNHYGRVWVLK 356
                 9******************.55554544778**********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2994.69
//
Query:       EHT99329.1  [L=442]
Description: D-serine ammonia-lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-65  220.4   0.3    4.4e-65  220.0   0.3    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.19   11.3   0.1       0.27   10.7   0.1    1.2  1  NmrA      NmrA-like family


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.3   4.9e-69   4.4e-65       3     280 ..      74     399 ..      72     405 .. 0.95

  Alignments for each domain:
  == domain 1  score: 220.0 bits;  conditional E-value: 4.9e-69
                 GCSSS--EEEECCTC....CCCCCE....EEEEEGGGST.TSBTTHHHHHHHHHHHHTT.........................TTTSEEEEEBSSHHH CS
        PALP   3 lgigpTPlvrlprls....kelgvp....lflKlEslnp.tgSfKdRgaeyllarlkeg.........................tgaktvveassGNhg 67 
                 +gi ++ +v++p+++    +++g++    l+lK++s+ p +gS+K+Rg  y +++++e+                          ++++++++s+GN g
  EHT99329.1  74 GGIIESDVVAIPAMQarleQAYGQKiagtLLLKKDSHLPiSGSIKARGGIYEVLNHAEKlalaagllspeadyrtllsptlrqfFSQYRIAVGSTGNLG 172
                 66777777778877766667778778889**************************9999999999********************************** PP

                 HHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHH...HHTTTTEEE... CS
        PALP  68 ralAaaaallGlkvtivvpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEil...eqlggkpda... 160
                 +++ +++a+lG+ vt++++ada ++k+a+lr++G +vve+++dy  av   +++aa++++++++++ ++ t ++gy+ +g+ ++   eq+g+++da   
  EHT99329.1 173 LSIGIMSARLGFNVTVHMSADAREWKKAKLRSHGVTVVEYEQDYGVAVGQGRKAAASDPNCFFIDDENSRTLFLGYAVAGQRLKaqfEQQGRVVDAqhp 271
                 ***********************************************************************************98999999****8889 PP

                 ..EEEE-SSSHHHHHHHHHHHHHSTT.-EEEEEEECTTCGGTTCCS..S.SS..B.......SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHH CS
        PALP 161 ..vvvpvGgGgliaGiaaglkerrpd.vrvigvepegsdalarslragrrvtvpvs......dtiadglavgspselafelldrlvdeivtvsdeeale 250
                   v++p+G+Gg  +G+a+glk +++d v+++++ep++s+++  ++ +g ++ ++v+       t+adglavg++s+++ ++++rl+d i+t++d+ +++
  EHT99329.1 272 lfVYLPCGVGGGPGGVAFGLKLAWGDhVHCLFAEPTHSPCMLLGITTGLHDGISVQdigidnVTAADGLAVGRASSFVGRAMQRLLDGIYTLDDARMYD 370
                 99************************************************************************************************* PP

                 HHHHHHHHHSB-B-HHHHHHHHHHHHHHHH CS
        PALP 251 amrllarregivvepssaaalaalklreag 280
                 ++ +la++eg+ +eps+ a++ +  ++ +g
  EHT99329.1 371 MLGWLAQEEGLRLEPSALAGMIGP-QHVCG 399
                 *********************998.66655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1     3e-05      0.27       4      53 ..     165     215 ..     163     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3e-05
                 SSTTSHHHHHHHHHHHHHT-EEEEEES.-S-SHHHHHHHHSTTEEEES-TT CS
        NmrA   4 iGaTGrqGksvvrallkaghkvralvR.dtkselakslkeaGvelvkgdld 53 
                 +G+TG++G s+  ++++ g++v + +  d ++ + ++l + Gv++v+ + d
  EHT99329.1 165 VGSTGNLGLSIGIMSARLGFNVTVHMSaDAREWKKAKLRSHGVTVVEYEQD 215
                 7**********************98862668888999*********77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3641.80
//
Query:       EHT99330.1  [L=414]
Description: N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-50  171.6   0.6    2.3e-50  171.2   0.6    1.2  1  Amidase_3  N-acetylmuramoyl-L-alanine amidase
    2.9e-26   91.4   0.6      5e-26   90.7   0.6    1.4  1  AMIN       AMIN domain


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.6   2.5e-54   2.3e-50       1     174 [.     188     402 ..     188     403 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 2.5e-54
   Amidase_3   1 ividpGHGgkdpGavgknglkEkdlnlkvalklaklLeakg.aeVvltrdddksvslkeranianksradlfvsiHadsaanssasGvevfy....... 91 
                 i+idpGHGg+dpGa gk +++Ekd++lk+ ++l++l+e+++ ++ ++tr++d++++l+ r+++a+k+radlfvsiHad++++++a+G +vf        
  EHT99330.1 188 IMIDPGHGGEDPGAHGKYKTREKDIVLKIGRRLKALIEKEHnMKAYMTRNEDVFIPLRVRVAKARKQRADLFVSIHADAFTSRAARGSSVFAlstrgat 286
                 9************************************************************************************************** PP

   Amidase_3  92 ..................................leknekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpedakll 156
                                                   + ++++ ++s ++ k++  ++ + ++l++r v +a  ++vl++++ip++lvE++fisn e++++l
  EHT99330.1 287 saaarflaqtqnesdliggvsmsgdryldhtmydMVQRQTIHDSLKFGKEVLHRMGRINHLHKRTVDQAG-FAVLKAADIPSILVETAFISNVEEERKL 384
                 **********************************************************************.**************************** PP

   Amidase_3 157 kseeyqeklakaiaegik 174
                 ++++yq ++a+ai egik
  EHT99330.1 385 RTTRYQHQVAEAILEGIK 402
                 *****************7 PP

>> AMIN  AMIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.6   5.6e-30     5e-26       1      97 []      39     142 ..      39     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 5.6e-30
        AMIN   1 vrinksddntelvletskaekykvftlsnpnrlviDlpnaelglelk....riennkpgiksvrvvgqkdpntvRvvldldksvkpq....epvrksgk 91 
                 vri++s+++ + +le++ a kyk+f l+np+rlviD++n  l+++lk    ++ +++p ik++r vgq+d+ntvRvvl+l+ +v+p+    +pv+  ++
  EHT99330.1  39 VRIWPSSTYSRMTLESNVALKYKQFALTNPDRLVIDIENLHLNSVLKgvnqHVRVDDPFIKNAR-VGQFDANTVRVVLELKRNVSPKifslAPVSSIQH 136
                 89**************************************************************.88************************9******* PP

        AMIN  92 glvvdl 97 
                 +lvvdl
  EHT99330.1 137 RLVVDL 142
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3323.78
//
Query:       EHT99331.1  [L=442]
Description: N-acetylglutamate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-31  107.6   0.3      1e-30  107.1   0.3    1.2  1  AA_kinase        Amino acid kinase family
    2.9e-06   27.5   0.0    1.3e-05   25.4   0.0    2.0  2  Acetyltransf_1   Acetyltransferase (GNAT) family
      7e-06   26.4   0.0    7.4e-05   23.1   0.0    2.3  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0019   18.2   0.0      0.015   15.2   0.0    2.3  2  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.3   2.3e-34     1e-30       1     240 [.      25     267 ..      25     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 2.3e-34
                 TEEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHG CS
   AA_kinase   1 krvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglp 99 
                 k++V+ lGG +++ + +  + +++++i  l++ g++lvvV G+++++d+ la+ ++l++ +++   r+t+++ +e+++ +a++ l  +++a+l    l+
  EHT99331.1  25 KTFVIMLGGEAIEHE-N--FSSIVNDIGLLHSLGIRLVVVYGARPQIDASLAA-NQLEPVYHK-YTRVTDAQSLELVK-QAAGRLQLDITARLSM-SLN 116
                 689**********55.4..8*********************************.*********.9************9.9*******99999865.569 PP

                 EEEE-GGGTCEECCCE..............HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCE CS
   AA_kinase 100 avglsaaaldateagr............degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVy 186
                 + +l++a ++++++++            d+ ++g+++++d+eai+++l+++ ++ l++  +++++ge+ +++s+ +a+ lA +l+A+k+i + +  GV 
  EHT99331.1 117 NTPLQGAHINVVSGNFiiaqplgvddgvDYCHSGRIRRIDEEAIHRQLDNDAIVLLGPV-AVSVTGESFNLTSEEVATQLAIKLKAEKMIGFCSEQGVI 214
                 **************************************************988888886.5******99****************************** PP

                 SSTTTTCCTTCECCEEEHHHCHH.CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 187 dadpkkvpdarllpeisvdeaee.saselatgGmkvkhpaalaaarrggipvvIt 240
                 d+++++v   +l+p+ +   ++e + +++   G+  +++ a++a+r+g+ + +++
  EHT99331.1 215 DREGNIV--SELFPNDAQARIDEmERDGDFLSGTVRFLRGAVKACRSGVRRSHLI 267
                 *******..68888885555555656999999****************9988876 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.42   1.9e+03      69      88 ..     277     296 ..     183     307 .. 0.65
   2 !   25.4   0.0     3e-09   1.3e-05      35     117 .]     336     412 ..     313     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.42
                     SGGGTTSSHHHHHHHHHHHH CS
  Acetyltransf_1  69 speyrgkGlGsaLlealeer 88 
                      + + + G+G++ + + +e+
      EHT99331.1 277 QELFSRDGIGTQIVMESAEQ 296
                     44555667777765555544 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 3e-09
                     EEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  35 llvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklGF 117
                     + ++++d+  i+++ l++  d  ++ +++  +aV+p+yr +  G +Ll+ ++ +a++ g++k+ vl      +++i+ +++ GF
      EHT99331.1 336 FTIIQRDNLTIACAALYPFMD--EKIGEMACVAVHPDYRSSSRGELLLQRVALQAKQMGLEKLfVL-----TTRSIHWFQERGF 412
                     445677777889998888888..8****************************99******999677.....6789999988998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.2   9.1e+02      36      48 ..     280     292 ..     263     323 .. 0.75
   2 !   23.1   0.0   1.6e-08   7.4e-05       4      75 ..     335     413 ..     332     414 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
                     GTTSSHHHHHHHH CS
  Acetyltransf_7  36 yrgkGiGraLlea 48 
                     + + GiG++++  
      EHT99331.1 280 FSRDGIGTQIVME 292
                     6789*****9853 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.6e-08
                     EEEEEEETTEEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHH..H.TT..SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld....aeitrlaVdpeyrgkGiGraLle..a.ae..kgiile.qlelnaekaikfYeklGFe 75 
                     ++ ++++d+  + ++al++      +e  ++aV+p+yr    G  Ll+  a ++   g++   +l++   ++i++++  GF+
      EHT99331.1 335 KFTIIQRDNLTIACAALYPFMdekiGEMACVAVHPDYRSSSRGELLLQrvAlQAkqMGLEKLfVLTT---RSIHWFQERGFT 413
                     5667788888899999999987555555559****************95424113455432222233...78*********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.22     1e+03      63      85 ..     280     302 ..     275     306 .. 0.82
   2 !   15.2   0.0   3.4e-06     0.015      28     110 ..     332     416 ..     315     425 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
  Acetyltransf_10  63 yrgqGigkaLleaveeeaekdgi 85 
                      + + Gig++++++  e+++++ i
       EHT99331.1 280 FSRDGIGTQIVMESAEQIRRATI 302
                      6799*******999999987655 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.4e-06
  Acetyltransf_10  28 egealllvaeeggkivGviel..rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavg 110
                      e ++++++  ++ +i+ ++ +  +d++  +++ ++V+p+yr+   g+ Ll++v  +a+++g++ +l v  +   +  ++  GF++v+
       EHT99331.1 332 EIDKFTIIQRDNLTIACAALYpfMDEKigEMACVAVHPDYRSSSRGELLLQRVALQAKQMGLE-KLFVLTT-RSIHWFQERGFTPVD 416
                      4466666776666666555333244445688899**************************999.8888755.456777888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3238.23
//
Query:       EHT99332.1  [L=617]
Description: exonuclease V (RecBCD complex), alpha chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-32  113.2   2.9    2.2e-31  109.1   0.5    2.7  3  AAA_30           AAA domain
    3.6e-30  105.2   0.1    7.8e-30  104.1   0.1    1.6  1  AAA_19           AAA domain
    1.3e-16   60.9   0.0    2.2e-16   60.2   0.0    1.3  1  Helicase_RecD    Helicase
    6.9e-16   57.8   0.3    1.5e-15   56.7   0.3    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    5.8e-12   45.8   2.0    1.5e-06   28.2   0.1    3.3  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    2.2e-09   37.5   0.5    4.6e-05   23.3   0.0    2.3  2  AAA_11           AAA domain
    4.7e-09   35.9   0.0    8.4e-09   35.1   0.0    1.4  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
    5.6e-07   29.4   0.1    1.3e-06   28.2   0.1    1.5  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.1e-05   25.7   0.1    3.3e-05   24.2   0.0    1.8  1  AAA_22           AAA domain
    4.4e-05   22.9   0.0    0.00071   18.9   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00028   21.2   0.1    0.00086   19.6   0.1    1.9  1  AAA_28           AAA domain
    0.00043   19.8   0.0    0.00083   18.8   0.0    1.4  1  UvrD_C           UvrD-like helicase C-terminal domain
     0.0096   15.4   0.0        1.1    8.7   0.0    2.4  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.011   14.9   0.0       0.02   14.0   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
      0.017   15.5   1.9      0.026   14.9   0.5    2.2  1  AAA_16           AAA ATPase domain
      0.017   15.2   0.4      0.033   14.2   0.4    1.7  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.037   13.8   0.0      0.068   12.9   0.0    1.4  1  AAA_24           AAA domain
      0.078   13.4   0.1       0.17   12.3   0.1    1.6  1  AAA              ATPase family associated with various cellul
      0.097   12.3   0.1       0.17   11.5   0.1    1.4  1  SRP54            SRP54-type protein, GTPase domain
       0.11   12.7   0.0       0.35   11.0   0.0    1.9  1  DUF4384          Domain of unknown function (DUF4384)
       0.11   11.9   0.0       0.18   11.1   0.0    1.3  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.12   11.3   0.0       0.22   10.4   0.0    1.3  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.15   12.0   0.2        0.3   11.0   0.2    1.5  1  NTPase_1         NTPase
       0.16   11.5   0.0       0.26   10.8   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.19   11.5   0.1       0.32   10.7   0.1    1.3  1  MukB             MukB N-terminal
       0.26    9.2   0.1         10    3.9   0.0    2.0  2  Herpes_Helicase  Helicase
        4.5    8.4  15.1         16    6.6   0.6    5.9  5  TPR_14           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.5   3.3e-34   2.2e-31       6     146 ..     160     324 ..     155     340 .. 0.82
   2 ?    3.2   0.0     0.094        62     149     178 ..     358     388 ..     344     401 .. 0.81
   3 ?    0.2   0.1      0.81   5.4e+02     129     163 ..     401     436 ..     369     444 .. 0.47

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 3.3e-34
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaag...grviglAptgkaAkvLaeelg.......i..........eastiakllkrlk... 81 
                 Q+ a++ +lt +  +av+ G++GtGKtt++++l +a+ + +    r+ ++AptgkaA++L+e+lg       +          ea t+++ll ++    
  EHT99332.1 160 QKIAAAVALTRK--TAVISGGPGTGKTTTVAKLLAALIRLNpepLRIQLAAPTGKAAARLTESLGkalqglaVdddecarfpaEATTLHRLLGAQPdsq 256
                 666666666666..7*****************9777666644679****************9888665555415555555666*********9998999 PP

      AAA_30  82 ....grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagi 146
                     + a    + ++l+vDEa+mvd +++a+l++a+   +a+v+++GD++QlasVeaG+vl d+++ +++
  EHT99332.1 257 rmryH-AGNPLHlDVLVVDEASMVDLTMMAKLISALPP-HARVVFLGDRDQLASVEAGAVLGDICRCSET 324
                 99863.33344569************************.*************************986554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.094
      AAA_30 149 aeLtevvRqke.seeraaalalregdaeeal 178
                   L++ +R++e s + ++a+ +++gda++  
  EHT99332.1 358 CLLRQSYRFDEkSGIGQLARTVNQGDARQMS 388
                 56999****9989*************98443 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.81
      AAA_30 129 asVeaGgvlrdlvea.agigtaeLtevvRqkeseer 163
                 ++ + G+++++++++ a+  +  L+ v+Rq+ +e++
  EHT99332.1 401 QPLNDGEAYQTMLNEvAQGYQDYLDAVQRQAAPEQA 436
                 444455555555443223334456666666554444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.1   1.2e-32   7.8e-30       1     144 [.     160     309 ..     160     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.2e-32
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.................atTiHrlalldfd 81 
                 q+ a++ al++k+ ++ +GpGtGKT+++ + +a l++l+ + p +i l+a+tg+Aa +l+e+l +   +                 atT+Hrl  l+++
  EHT99332.1 160 QKIAAAvALTRKTAVISGGPGTGKTTTVAKLLAALIRLNPE-PLRIQLAAPTGKAAARLTESLGK---AlqglavdddecarfpaeATTLHRL--LGAQ 252
                 5666666********************************76.79*****************9944...33459999*****************..9999 PP

      AAA_19  82 dlltealelleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyv 144
                 ++ +     +++ +  ++l + ++l+vDE+++vd  ++ +L++al+ ++++++++GD+dQl +v
  EHT99332.1 253 PDSQ----RMRY-HAGNPL-HLDVLVVDEASMVDlTMMAKLISALP-PHARVVFLGDRDQLASV 309
                 9992....3333.678999.889***********************.6666**********986 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   3.3e-19   2.2e-16       1     119 [.     174     299 ..     174     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 3.3e-19
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegk..snilvtapskenvktlfeflakglealglkeeekkkkaekaelrvr.......kqrieyiapdellkl 87 
                    v+++++G+GK+++++++laali+ +    +i ++ap+ +++++l+e+l k+l+ l +++ e ++ + +a++ +r       +qr++y+a + l+  
     EHT99332.1 174 VISGGPGTGKTTTVAKLLAALIRLNPepLRIQLAAPTGKAAARLTESLGKALQGLAVDDDECARFPAEATTLHRllgaqpdSQRMRYHAGNPLHL- 268
                    799********************998899******************************8888888888888888999999*************9. PP

  Helicase_RecD  88 keqadllvvDEAAaiplpllkkl...lekfkrvvl 119
                        d+lvvDEA++++l+++ kl   l  ++rvv+
     EHT99332.1 269 ----DVLVVDEASMVDLTMMAKLisaLPPHARVVF 299
                    ....89*****************444444556655 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.3   2.3e-18   1.5e-15       2      51 ..     540     586 ..     539     587 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 2.3e-18
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51 
                 a+++t+hk+QGsef+++ ++ p+   +    l+r+l+Yta+TRAr++l+l
  EHT99332.1 540 AWVMTVHKSQGSEFDHTALVMPTQFLPV---LTRELVYTAITRARKQLTL 586
                 8******************888877776...68***************98 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0017       1.2       2      28 ..     174     198 ..     173     235 .. 0.79
   2 !    6.6   0.0    0.0083       5.5      62     102 ..     267     308 ..     235     316 .. 0.85
   3 !   28.2   0.1   2.2e-09   1.5e-06     184     233 ..     541     587 ..     527     588 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0017
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvn 28 
                      v++G pG GK+t + kll     ++ n
       EHT99332.1 174 VISGGPGTGKTTTVAKLLAA--LIRLN 198
                      89***************988..44444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0083
  Viral_helicase1  62 kgkililDEylllhaGyill.laalskaklvilfGDplQipf 102
                      + ++l++DE+ +++  ++   + al+    v+ +GD+ Q  +
       EHT99332.1 267 HLDVLVVDEASMVDLTMMAKlISALPPHARVVFLGDRDQLAS 308
                      4689**********9999887899999999*********765 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 2.2e-09
  Viral_helicase1 184 evttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslvil 233
                       v+tvh  qG++fd++ lv  ++     +  +re +++A+TR+rk+l+++
       EHT99332.1 541 WVMTVHKSQGSEFDHTALVMPTQFL--PV-LTRELVYTAITRARKQLTLY 587
                      589******************7763..34.469**************987 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.9e-08   4.6e-05       3      76 ..     157     223 ..     155     249 .. 0.79
   2 !   12.3   0.1   0.00017      0.11     217     256 ..     267     308 ..     243     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 6.9e-08
      AAA_11   3 ndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllr 76 
                 +d q+ a + al+++  ++i+G PGtgKT+t+++ll++l+      + + ++ ri ++ap+ +A   l+e l +
  EHT99332.1 157 DDWQKIAAAVALTRKT-AVISGGPGTGKTTTVAKLLAALI------RLNPEPLRIQLAAPTGKAAARLTESLGK 223
                 5667778888888887.9*********************4......3456777888888888887777776655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
      AAA_11 217 kfdvviIDEAaqa..vEpstliPlrlgakkvvLvGDpkQLpa 256
                   dv+++DEA++   + ++ li  +   ++vv +GD  QL +
  EHT99332.1 267 HLDVLVVDEASMVdlTMMAKLISALPPHARVVFLGDRDQLAS 308
                 689********97546667777777777************86 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.3e-11   8.4e-09       1      64 [.     459     518 ..     459     519 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.3e-11
      SH3_13   1 LNkelqealnpkskkkkevkvggrvfrvgDkVmqlkNnydkgvfNGDiGiikeidkeekkltVd 64 
                 LN++++++l + ++ ++     g+ ++ g++Vm ++N+  +g+fNGDiGi  +    e +l+V 
  EHT99332.1 459 LNQRIEQRLMQLQRIRR--PALGSRWYPGRPVMITRNDSALGLFNGDIGITLRDA--EGQLRVF 518
                 8*******999874433..346777************************987763..4446665 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1     2e-09   1.3e-06       6      79 ..     163     235 ..     159     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2e-09
                    HHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT- CS
  UvrD-helicase   6 reaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdd 79 
                     +a+a ++++ +++ ++G+GKT+++a++ + li+ +  ep ri +   T kAa+ l e + +al+   +   ++
     EHT99332.1 163 AAAVALTRKTAVISGGPGTGKTTTVAKLLAALIRLN-PEPLRIQLAAPTGKAAARLTESLGKALQGLAVDDDEC 235
                    578999****************************99.**********************999988776554444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.9e-08   3.3e-05       5     114 ..     170     289 ..     167     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.9e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka.........erlsseell.ealeqalrarav 91 
                 ++  v+ G +GtGKTt++++ll  l +       +pe ++++l+++t    + l + l +al+  + +         e  ++++ll ++   +  ++++
  EHT99332.1 170 RKTAVISGGPGTGKTTTVAKLLAALIR------LNPEPLRIQLAAPTgkAAARLTESLGKALQGLAVDddecarfpaEATTLHRLLgAQPDSQRMRYHA 262
                 67789*******************943......48888889988888766667777777777766666888***9985555555553333333333333 PP

      AAA_22  92 .....ielliiDEaqhlrseealeeLrs 114
                        +l++DEa  +   +++ +L s
  EHT99332.1 263 gnplhLDVLVVDEASMV-DLTMMAKLIS 289
                 6666689********99.8999988855 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-06   0.00071       2      98 ..     171     277 ..     170     421 .. 0.80
   2 ?    1.7   0.0      0.19   1.3e+02     280     304 ..     541     565 ..     527     602 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealakke........ekkkkkeafeklssfinnlsef.kkaeekkeepked 90 
                 +  +++G++GtGKt    +lla+l + + e  + +++   ++  + l e l k          e  ++ ++++ l  +  +     + +++  +  ++d
  EHT99332.1 171 KTAVISGGPGTGKTTTVAKLLAALiRLNPEPLRIQLAAPTGKAAARLTESLGKALqglavdddECARFPAEATTLHRLLGAQPDSqRMRYHAGNPLHLD 269
                 6789*******************9733334444444455555555555555444443333333666677777776666665554468888899999*** PP

     DUF2075  91 vvivDEAh 98 
                 v++vDEA 
  EHT99332.1 270 VLVVDEAS 277
                 ******95 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
     DUF2075 280 evgseytiQGleldyvgviiGpdlv 304
                  v+++++ QG e+d + +++  ++ 
  EHT99332.1 541 WVMTVHKSQGSEFDHTALVMPTQFL 565
                 689***************9998875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.3e-06   0.00086       3      35 ..     174     206 ..     172     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-06
      AAA_28   3 vitGgestGKTtlleaLaargypvvpEaareil 35 
                 vi+Gg++tGKTt++++L a  ++  pE+ r  l
  EHT99332.1 174 VISGGPGTGKTTTVAKLLAALIRLNPEPLRIQL 206
                 9*****************999999999988665 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-06   0.00083     285     344 ..     538     586 ..     521     590 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfi 344
                 e   ++T+H++ G+EFd   l+    + +P ++          + l Y aiTRA+k+L++
  EHT99332.1 538 ETAWVMTVHKSQGSEFDHTALVM-PTQFLPVLT----------RELVYTAITRARKQLTL 586
                 66679**************9998.555666333..........67*************97 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.047        31      14      61 ..     165     213 ..     155     237 .. 0.66
   2 !    8.7   0.0    0.0016       1.1     112     158 ..     260     306 ..     239     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.047
                 HHHHH-SEEEEE--TTSSTTH.HHHHHHHHHHHTTS-SEEEEEE-S--T CS
        PhoH  14 ealkkndivfaiGpaGtGKty.lavalavealkkkkvkriiltrpavea 61 
                  +  + +  ++ G  GtGKt  +a  la+ +  + +  ri l+ p+ +a
  EHT99332.1 165 AVALTRKTAVISGGPGTGKTTtVAKLLAALIRLNPEPLRIQLAAPTGKA 213
                 333366777888889****862455555555555666666666666655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0016
                 GGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 112 ymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                 y  G  l+  ++++DEA  +  + m  +++ l  +++vv++Gd  q 
  EHT99332.1 260 YHAGNPLHLDVLVVDEASMVDLTMMAKLISALPPHARVVFLGDRDQL 306
                 55588899999********************************9996 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     3e-05      0.02     110     153 ..     154     194 ..     132     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
       T2SSE 110 aeealkekiaevlrkavrerglilvsGgTgsGKttllyallkei 153
                  ++++ +kia++++     r++ ++sGg g+GKtt++  ll+ +
  EHT99332.1 154 RQPDDWQKIAAAVALT---RKTAVISGGPGTGKTTTVAKLLAAL 194
                 4445556777777777...9****************98888765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   3.9e-05     0.026       9     106 ..     159     250 ..     150     328 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-05
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy...sa.laqalareellrqlldeaesaeleawreklee 103
                 ++++++a+  +r       ++sG +G+GK++ v +ll al +      + +  + + a+p    +a l++ l +  l     d++e a ++a +++l++
  EHT99332.1 159 WQKIAAAVALTR----KTAVISGGPGTGKTTTVAKLLAALIRL-----NPEPLRIQLAAPTgkaAArLTESLGK-ALQGLAVDDDECARFPAEATTLHR 247
                 566666665443....5678*****************655543.....33333334444442221114555522.444444444444444444444444 PP

      AAA_16 104 ala 106
                  l+
  EHT99332.1 248 LLG 250
                 444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4     5e-05     0.033       2      25 ..     173     196 ..     172     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5e-05
                 EEEESSTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   2 aiastkGGvGKTtlaanLaralar 25 
                 a++s+  G+GKTt++a+L++al r
  EHT99332.1 173 AVISGGPGTGKTTTVAKLLAALIR 196
                 799999***************987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001     0.068       3      76 ..     171     278 ..     169     291 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
      AAA_24   3 lkiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfldevvel..............................aaela 64 
                 +  +i G +g+GKTt++++l        p+pl i++ + + +  a+  +   s+ + l+ ++ +                              a ++ 
  EHT99332.1 171 KTAVISGGPGTGKTTTVAKLlaalirlNPEPLRIQLAAPTGKAAARLTE---SLGKALQGLAVDddecarfpaeattlhrllgaqpdsqrmryhAGNPL 266
                 567999**************99999998999988555433222222222...22222222222222333334444444666666677777777777777 PP

      AAA_24  65 dyktlviDtide 76 
                 ++++lv+D ++ 
  EHT99332.1 267 HLDVLVVDEASM 278
                 777777777665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00025      0.17       3      37 ..     175     212 ..     173     286 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
                 EESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS CS
         AAA   3 lyGppGtGKTllakavakel...gvefleisgsellsk 37 
                 ++G pGtGKT+++  +   l   + e l+i+++  + k
  EHT99332.1 175 ISGGPGTGKTTTVAKLLAALirlNPEPLRIQLAAPTGK 212
                 79*******99887777764343566666666655533 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00026      0.17       4      27 ..     173     196 ..     170     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                  ++ G  G+GKTtt+aKL a l +
  EHT99332.1 173 AVISGGPGTGKTTTVAKLLAALIR 196
                 5778999**********9877655 PP

>> DUF4384  Domain of unknown function (DUF4384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00053      0.35      25      71 ..     509     552 ..     504     555 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
     DUF4384  25 idasgevtllfPnrfdgdnfvkagetytiPseeaefeftvepppGee 71 
                  da+g++ ++fP    +d  vka ++ ++Ps e ++ +tv++  G+e
  EHT99332.1 509 RDAEGQLRVFFP---LPDGSVKAIQPSRLPSHETAWVMTVHKSQGSE 552
                 69**********...5899***********************99987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.18      42      70 ..     173     200 ..     139     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                   EEEE--TTSSHHHHHHHHHHHHHTT--TT CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntLilSlatthtPe 70 
                    ++ G++g+GK+t++  L+++l+   +Pe
    EHT99332.1 173 AVISGGPGTGKTTTVAKLLAALIR-LNPE 200
                   599***************999886.4444 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00033      0.22      13      39 ..     168     194 ..     159     204 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00033
  TrwB_AAD_bind  13 retqhilivGttGsGKtqalekllrai 39 
                      ++ ++i G+ G+GKt+++ kll+a+
     EHT99332.1 168 LTRKTAVISGGPGTGKTTTVAKLLAAL 194
                    5567789*****************975 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00046       0.3       3      23 ..     174     194 ..     172     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                 +i+G pG+GKtT v k+l +l
  EHT99332.1 174 VISGGPGTGKTTTVAKLLAAL 194
                 79***************9988 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0004      0.26      31      73 ..     168     210 ..     159     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqt 73 
                   +k  ++ G  GtGKt+++ +ll +l + +  +l i++ a t
  EHT99332.1 168 LTRKTAVISGGPGTGKTTTVAKLLAALIRLNPEPLRIQLAAPT 210
                 567888999***************9999888888888888776 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00049      0.32      23      51 ..     167     195 ..     158     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
                 -HHHHHHHHHS--SHHHHHHHHHHHHHHS CS
        MukB  23 dldelvttlsGgnGaGksttmaafvtali 51 
                  l +  + +sGg G+Gk+tt+a +++ali
  EHT99332.1 167 ALTRKTAVISGGPGTGKTTTVAKLLAALI 195
                 567778899******************99 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028        18      49      83 ..     160     194 ..     127     197 .. 0.74
   2 ?    3.9   0.0     0.016        10     733     776 ..     542     587 ..     537     606 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
  Herpes_Helicase  49 eeeeselslPFsaylitGtAGaGkstsiqalaenl 83 
                      ++    ++l  ++ +i+G  G+Gk+t+++ l ++l
       EHT99332.1 160 QKIAAAVALTRKTAVISGGPGTGKTTTVAKLLAAL 194
                      34444455888999**************9998766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.016
  Herpes_Helicase 733 amtiaksqGlslekvAicFgnh..knlklssvYvalsRatdseflv 776
                       mt+ ksqG  +++ A+    +    l ++ vY a+ Ra++  +l 
       EHT99332.1 542 VMTVHKSQGSEFDHTALVMPTQflPVLTRELVYTAITRARKQLTLY 587
                      5***************9998887778999**********9877665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6     0.025        16       6      25 ..      71      91 ..      68      93 .. 0.86
   2 ?    0.8   0.0       1.8   1.2e+03      17      36 ..     141     160 ..     129     170 .. 0.82
   3 ?    3.0   0.0      0.35   2.3e+02      15      40 ..     182     207 ..     181     208 .. 0.85
   4 ?   -0.2   0.1       3.8   2.5e+03      22      40 ..     243     261 ..     214     263 .. 0.76
   5 ?    2.0   0.7      0.75     5e+02       4      27 ..     420     443 ..     417     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.025
      TPR_14  6 alaealla.lGdpdeAiallr 25
                ala+al++ +G pdeA+++++
  EHT99332.1 71 ALAQALWQaAGAPDEAERHAQ 91
                79****9637*******9875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.8
      TPR_14  17 pdeAiallrralalaPddae 36 
                  ++A+++l+ +  ++Pdd++
  EHT99332.1 141 SQQARDVLQTLFGRQPDDWQ 160
                 467999****999****984 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.35
      TPR_14  15 GdpdeAiallrralalaPddaeawll 40 
                 G++ + ++ll ++++l+P++++++l+
  EHT99332.1 182 GKTTTVAKLLAALIRLNPEPLRIQLA 207
                 66777899************999875 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 3.8
      TPR_14  22 allrralalaPddaeawll 40 
                 + l+r+l ++Pd+++ +++
  EHT99332.1 243 TTLHRLLGAQPDSQRMRYH 261
                 3477888888888887766 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.75
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 ++++++a  ++  p++Aia++ r+
  EHT99332.1 420 YQDYLDAVQRQAAPEQAIAAFSRY 443
                 7889999999***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4139.36
//
Query:       EHT99333.1  [L=1179]
Description: exonuclease V (RecBCD complex), beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-61  208.6   0.0      3e-61  207.7   0.0    1.5  1  UvrD-helicase  UvrD/REP helicase N-terminal domain
      2e-20   73.5   0.0    2.6e-10   40.2   0.0    3.2  2  UvrD_C         UvrD-like helicase C-terminal domain
    4.5e-18   66.0   0.0    3.8e-17   63.0   0.0    2.5  2  AAA_19         AAA domain
    4.2e-07   29.7   0.1     0.0055   16.5   0.0    2.7  2  UvrD_C_2       UvrD-like helicase C-terminal domain
    0.00017   21.6   0.1     0.0009   19.2   0.1    2.3  2  PDDEXK_1       PD-(D/E)XK nuclease superfamily
     0.0026   17.5   0.3        1.1    8.9   0.0    2.9  3  AAA_30         AAA domain
  ------ inclusion threshold ------
       0.07   12.9   0.0       0.21   11.3   0.0    1.8  2  AAA_11         AAA domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.0   1.2e-64     3e-61       3     313 ..       6     436 ..       4     438 .. 0.84

  Alignments for each domain:
  == domain 1  score: 207.7 bits;  conditional E-value: 1.2e-64
                    HHHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS........STGGGEEEEESSHHHHHHHHHHHHH................HHHHCC CS
  UvrD-helicase   3 peqreaias.lggpilveAsAGsGKTfvlaerilrlikeee........iepdrilvvTFTnkAaeElkeRiee................alkkae 73 
                    pe  ++++  l+g+ l+eAsAG+GKTf++  ++lrl+   +         ++++ilvvTFT++A++El+ Ri+                 ++ +++
     EHT99333.1   6 PEPLNPLTLpLNGERLIEASAGTGKTFTIGLLYLRLLLGLGgenawrrpLSVEEILVVTFTEAATAELRGRIRDnihqlrlacvrgkshnTMHQQL 101
                    67778888889**************************98774344444445555********************9**9999998887777555555 PP

                    HHCTT-H.....HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT...................SHTTTEEECHHHHH.................. CS
  UvrD-helicase  74 qessdde.....rlrlalqnlseanisTlHsfcqkilkkeanrig...................ldpnfrildeedee.................. 127
                     e++ d       l  a+++++ea+i+T+H+fcq++l+ +a+++g                                                   
     EHT99333.1 102 IEQIADLpqaasLLLAAERQMDEAAIFTIHGFCQRMLNLNAFESGmlfeqelieneqtllrqaaA------------Dfwrrqcyplsldvarvia 185
                    5555555888889999*****************************88888874444444444440............3666666666666666777 PP

                    ............HCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH...................................HHHCCCHH CS
  UvrD-helicase 128 ............dlkqqellkelleksaddslnldkkkleklikelsksrnik...................................keelslsk 176
                                   +++     l++ ++++++l+++++ +l +   ++++++                                    +  +l+ 
     EHT99333.1 186 aewsgpdsllttLRPWLQGESPRLKRPPRADETLASRHTANLQRIQALKQQWQtvcadiegmiaasgvdkrsysskhlpnwvakvtqwAQSDTLDY 281
                    7777777777765567777788888888888999999999999999999999999999999999999999999999999999*9999988888888 PP

                    HHHCHHHHHHHHHHHTTCCTTHHCHSS..............TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHH..CHHHHHHHHHH CS
  UvrD-helicase 177 skaeelrelvskakekqlspkelkkaf..............ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallellee..neelaealrer 256
                    + ++el+ + +++ ++++++ e  ++                ++   ++++ e+ ++ q++k+++ +l f+dll++l e+l++  +  lae +r r
     EHT99333.1 282 QFPKELERFGQQVLHEKTKKGEAPQHAlfdavdgflaepltLRDIIIWQALSEVKETVQREKRQRALLGFDDLLSRLDEALQQpgGALLAETIRGR 377
                    8899999999988888888888777668899999999777666777788899999999999999999****************99999******** PP

                    SSEEEESSGGG-BHHHHHHHHHHHTTTTT..EEEEE-GGG--GGGGTB-THHHHHHHHH CS
  UvrD-helicase 257 ykeiliDEyQDTnkiQyrilkllasghee..lfmvGDpkQsIYgFRgAdielflkkkkd 313
                    ++++liDE+QDT+++Qyri+++l+ +++   l+++GDpkQ+IY+FRgAdi+++l+++++
     EHT99333.1 378 FPVALIDEFQDTDPQQYRIFRTLYIQQPDvaLLLIGDPKQAIYAFRGADIFTYLRARSE 436
                    **************************9999************************99876 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.5e-10   1.1e-06       3     167 ..     443     647 ..     441     655 .. 0.68
   2 !   40.2   0.0     1e-13   2.6e-10     224     337 ..     667     808 ..     654     810 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.5e-10
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
      UvrD_C   3 LekNyRStksLlkaankflenilnr.ralekek................................ktvekgekivvleaeteeeEaekiaatikall.. 66 
                 Le+N+RS++ +++ +n++++++      ++ +                                 + v  ++  +++  +   +++++        l  
  EHT99333.1 443 LETNWRSSPAMVNSVNRLFSQVDAPfLFSS-IPflpvspaapnqaltlvyhdqpqpalrfwlqpgEGVGVSDYQQFMAQQCAADISRW--------Lva 532
                 666666666666666666655554433333.113334455566666666666666666533333333333333333333333333333........333 PP

                 .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  67 .............ekneklediavLvRsnkdadkiskaLkkegipfnvvd.eekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveri 151
                               +  k +di+vLvRs ++a +i +aL+k+ ip + ++   + + ++e +++l +l+ + +++++  l+  l + +  i+ a+++++
  EHT99333.1 533 gqqgkarlgkgdaLQPVKASDITVLVRSRNEASLIRDALNKLAIPSVYLSsRDSVYTTPEARELLWLLQAVQSPEQERLLRSALATSIFAIDAAQLDAL 631
                 33333366666655667899*************************999987899********************************************* PP

                 xxxxxxxxxxxxxxxx RF
      UvrD_C 152 seelkklglsltDfik 167
                  ++ ++    + +f++
  EHT99333.1 632 AQNEREWDALVEQFVS 647
                 8888888877777776 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 1e-13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx RF
      UvrD_C 224 lkekseskrkkeeklenlreLysllkelekkeeeeeveeklneileia......tLseseleeskkkekipiiTiHqAKGlEFdvVfl...agleegtf 313
                  ++ +e++ ++e+ +++l +L+ l + l++++ + +++++l ++l +       + ++++l+ +++   ++i+TiH++KGl ++ V l   ag +e   
  EHT99333.1 667 KRQLAENMLASENGERRLTDLMHLGELLQEAATQLDSTHALVRFLAQQiarpdsQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLpfaAGFREAAS 765
                 455555555555555677777777777777777999999999999999677775444444444444499*****************9922234444444 PP

                 x....xxxxxx...................xxxxxxxxxxxxxxxxx RF
      UvrD_C 314 P....syrskk...................ekrleEEkRlfYVaiTR 337
                           +                   e+rl+E+ Rl+YVa+TR
  EHT99333.1 766 AlyhdR----EsfaamldvqgdaqsltlaeEERLAEDLRLLYVALTR 808
                 455550....2555555555666666666699*************** PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   1.5e-20   3.8e-17      14     146 .]      21     423 ..      16     423 .. 0.92
   2 ?   -2.4   0.0       2.1   5.4e+03      54      78 ..     723     766 ..     712     814 .. 0.66

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.5e-20
      AAA_19  14 lvtaGpGtGKTrvlkhi.vallvelggvkp.......eeillvaftgrAakelrerlaalgae.................................... 68 
                 l+ a +GtGKT ++    ++ll+ lgg+++       eeil+v+ft+ A+ elr r++   ++                                    
  EHT99333.1  21 LIEASAGTGKTFTIGLLyLRLLLGLGGENAwrrplsvEEILVVTFTEAATAELRGRIRDNIHQlrlacvrgkshntmhqqlieqiadlpqaaslllaae 119
                 789***********86526778888888889999999******************99766666889999999977777777777777777777777777 PP

      AAA_19  69 .......atTiHrlal................................................................................... 77 
                        + TiH++                                                                                     
  EHT99333.1 120 rqmdeaaIFTIHGFCQrmlnlnafesgmlfeqelieneqtllrqaaadfwrrqcyplsldvarviaaewsgpdsllttlrpwlqgesprlkrppradet 218
                 7777776677776655*********************************************************************************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  EHT99333.1 219 lasrhtanlqriqalkqqwqtvcadiegmiaasgvdkrsysskhlpnwvakvtqwaqsdtldyqfpkelerfgqqvlhektkkgeapqhalfdavdgfl 317
                 *************************************************************************************************** PP

      AAA_19  78 ...............................ldfddlltealelle...eaeeekklqeee.llivDEfqdvdelqyrLlkallgek..kklllvGDpd 139
                                                l+fddll+   e+l+    a   ++++ ++ + ++DEfqd+d++qyr++++l+ ++    lll+GDp+
  EHT99333.1 318 aepltlrdiiiwqalsevketvqrekrqralLGFDDLLSRLDEALQqpgGALLAETIRGRFpVALIDEFQDTDPQQYRIFRTLYIQQpdVALLLIGDPK 416
                 **************************************999999998884445678888999*********************98775345******** PP

      AAA_19 140 Qliyvfr 146
                 Q+iy+fr
  EHT99333.1 417 QAIYAFR 423
                 *****97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
      AAA_19  54 AakelrerlaalgaeatTiHrlal...................l 78 
                 A ++lr + +  ++++ TiH+                       
  EHT99333.1 723 ASQQLRLESDRHLVQIVTIHKSKGlqyplvwlpfaagfreaasA 766
                 55677777777788899999874445555555555444444441 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.2e-06    0.0055       4      29 ..     738     761 ..     735     769 .. 0.79
   2 !   10.4   0.0   0.00018      0.46      26      45 ..     790     809 ..     780     815 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.2e-06
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaar 29 
                 ++tihk++G+++p V +  p +a +r
  EHT99333.1 738 IVTIHKSKGLQYPLVWL--PFAAGFR 761
                 89*************99..7766665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00018
    UvrD_C_2  26 aaarmgelrrrlLYtavTRA 45 
                 a++++ ++  rlLY+a+TR+
  EHT99333.1 790 AEEERLAEDLRLLYVALTRS 809
                 4445555699*********8 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         2   5.1e+03     115     180 ..      53     121 ..      47     167 .. 0.62
   2 !   19.2   0.1   3.5e-07    0.0009     124     199 ..    1035    1145 ..     941    1177 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2
    PDDEXK_1 115 rpvale....lefgg.ekvrLkGri.DrvddkegelriiDyKtgsappkskelaelkeglQlllYllalaeg 180
                 rp+++e    + f+   + +L+Gri D +   + +l  +  K+ ++  +++  +++++ +Q +  lla++++
  EHT99333.1  53 RPLSVEeilvVTFTEaATAELRGRIrDNIH--QLRLACVRGKSHNTMHQQL-IEQIADLPQAASLLLAAERQ 121
                 566666643335554467778887755553..1234445555544322222.23444444666555555555 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 3.5e-07
    PDDEXK_1  124 g..................g.ekvr..LkGriDrvddkegelriiDyK........tgsappkske....la.elkeglQlllYllalaeg.eelke 185 
                  +                  + ++vr  LkG+iD+v + +g+++++DyK        t  ++    e       + +++lQ  lY lal++  + +++
  EHT99333.1 1035 DldalmrrhdplsqraaalDfRQVRgmLKGFIDLVFRWQGKYYLLDYKsnwlgdshTAYTQ----EamaqAMiDHRYDLQYQLYTLALHRYlQHRLA 1127
                  033333333344444444422334444*********88889*******5554443322222....23432223556666**********99444443 PP

    PDDEXK_1  186 ege......pagalylrlee 199 
                    +       +g++y++l+ 
  EHT99333.1 1128 --GydyqqhFGGVFYVFLRG 1145
                  ..145777788888888854 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00044       1.1      22      65 ..      21      76 ..      16     125 .. 0.79
   2 !    5.3   0.0    0.0055        14      86     160 ..     374     452 ..     337     469 .. 0.71
   3 ?   -2.9   0.1       1.8   4.6e+03     147     171 ..    1032    1057 ..    1028    1062 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00044
      AAA_30 22 vltGpAGtGKttalkal.reaweaag...........grviglAptgkaAkvLaee 65
                ++++ AGtGKt++++ l  +++   g           +++++++ t++a ++L+  
  EHT99333.1 21 LIEASAGTGKTFTIGLLyLRLLLGLGgenawrrplsvEEILVVTFTEAATAELRGR 76
                799***********998766666665588888888888899999999998888854 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0055
      AAA_30  86 lepg.tllivDEagmvdtkqlaallkaaek.agakvilvGDerQla.sVeaGgvlrdlveaagi.gtaeLtevvRqkes 160
                 ++ +  + ++DE   +d +q + + +   +  ++ ++l+GD++Q   +    ++++ l + ++   + +L++++R + +
  EHT99333.1 374 IRGRfPVALIDEFQDTDPQQYRIFRTLYIQqPDVALLLIGDPKQAIyAFRGADIFTYLRARSEVsAHYTLETNWRSSPA 452
                 4555578899******99999999886555168***********75144445677777544333377888888887544 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
      AAA_30  147 gtaeLtevvRqke.seeraaalalre 171 
                  ++a L+ ++R ++  ++raaal++r+
  EHT99333.1 1032 TAADLDALMRRHDpLSQRAAALDFRQ 1057
                  57899999999997899999999987 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.2e-05      0.21      16      98 ..      18     103 ..       7     252 .. 0.75
   2 ?   -2.7   0.0       1.5     4e+03     246     253 ..     410     417 ..     408     417 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.2e-05
      AAA_11  16 eseitliqGPPGtgKTktivellsqllsr...rkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee..e 98 
                  +  +li+   GtgKT+ti  l+ +ll     ++  ++    ++iLv + ++aA  el  r+ +++++ + +  + k    ++++  e
  EHT99333.1  18 GE--RLIEASAGTGKTFTIGLLYLRLLLGlggENAWRRPLSVEEILVVTFTEAATAELRGRIRDNIHQLRLACVRGKSHNTMHQQliE 103
                 44..699999***************98444443356779999*******************999444444444444443344444443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
      AAA_11 246 vLvGDpkQ 253
                 +L+GDpkQ
  EHT99333.1 410 LLIGDPKQ 417
                 7******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7904.02
//
Query:       EHT99334.1  [L=962]
Description: protease III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-52  178.5   2.2    2.9e-52  177.7   2.2    1.4  1  Peptidase_M16_M  Middle or third domain of peptidase_M16
    1.6e-35  122.3   0.0    1.8e-34  118.9   0.0    2.7  2  Peptidase_M16    Insulinase (Peptidase family M16)
    1.8e-29  103.0   0.2    9.3e-20   71.4   0.0    2.9  3  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
      0.095   13.0   0.1       0.23   11.7   0.1    1.7  1  Defensin_propep  Defensin propeptide


Domain annotation for each model (and alignments):
>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   2.2   6.6e-56   2.9e-52       1     272 [.     401     672 ..     401     678 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 6.6e-56
  Peptidase_M16_M   1 FrFkekeepsdyvsslaenmqkyppedvlsgpylleeydpelikellssLtpenarivlvske..tdekekwygteYsvekiseelleewksae 92 
                      Fr+ + ++ +dy+++la +m ++p+e+ l +pyl ++ydp +i++ l+s+tp +ari+++s++  +++ + +++++Y+v+ki++++l++w++ +
       EHT99334.1 401 FRYPSITRDMDYIEWLADTMLRVPVEHTLDAPYLADRYDPAAINARLESMTPAQARIWYISPQepHNKLAYFVNAPYQVDKITAQTLTQWQQRG 494
                      9*************************************************************6343789999*******************999 PP

  Peptidase_M16_M  93 eneeLhLPepNpFiptdfslkkesesepakaPelirdtelvrlWykkDdtF.kvPkasvrlklrsplasksprnavltelfvellkdslneyly 185
                      +  +L++P+ Np+ip+ f+l ++  ++  ++P+++ ++ ++r+++++ + +   Pkas+++ lr+++a +++r++vl  l   l + +l e++ 
       EHT99334.1 495 QAIQLAMPRLNPYIPDAFTLVST--DKTYRHPVKLDNDFGMRIYWMPSQFYaSEPKASITVALRNQQAISDARQQVLFGLNDYLASLALDELSS 586
                      999*****************744..5789*******************999999**************************************** PP

  Peptidase_M16_M 186 dAelAglsyslssskeglelsvsGYndklpvLlekvleklknfeikedrFevikekllrelknfklekpyqqarellsslleekawt 272
                      +A++ g+s+s s ++ gl +++sG++++lp Ll++++++ ++f+++e +++++k  +l++l+ +++ k ++qa + ++ l + ++ +
       EHT99334.1 587 QASIGGISFSTSEND-GLVFNASGFTQRLPDLLKQLVNRYSTFQPSEAQLQQAKSWYLERLDAAEKGKAFEQAIQPMQLLSQLPYTQ 672
                      **********99776.***********************************************************999988877655 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0     4e-38   1.8e-34       2     148 ..      56     192 ..      55     193 .. 0.97
   2 ?   -0.6   0.0      0.26   1.2e+03      58     110 ..     588     638 ..     583     668 .. 0.70

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 4e-38
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    v+l+sd++a++s ++l+   GS+++p +++GlAH+lehm+++g+ +yp+ ++la +l+k+Ggs+nA+t   +t+Yy+ev++++le a+d+lad ++
     EHT99334.1  56 VLLVSDTQAPKSLAALTLPIGSLDDPAQQPGLAHYLEHMVLMGSTRYPQpDSLADFLKKHGGSHNASTASYRTAYYLEVENDALEPAVDRLADAIA 151
                    8999******************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    +pll++ + +r       e+ av+ae     +++++++  r+ ++g ++++p
     EHT99334.1 152 EPLLDPVNADR-------ERHAVNAEL----TMARSRDGLRMGQVGAETINP 192
                    ***********.......999999999....999999999999999999988 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.26
                    HHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHH CS
  Peptidase_M16  58 eklGgslnAttsrentvYyvevlskdlekaldvladvfkaplleesevererk 110
                    +++Gg + +t++ +  v+ ++ +++ l+++l  l +  + +++++se + ++ 
     EHT99334.1 588 ASIGGISFSTSENDGLVFNASGFTQRLPDLLKQLVN--RYSTFQPSEAQLQQA 638
                    578999999999999999999999999977766644..345777777665433 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.62   2.8e+03      77     160 ..      65     147 ..      28     160 .. 0.55
   2 !   71.4   0.0   2.1e-23   9.3e-20       5     179 ..     217     393 ..     215     397 .. 0.90
   3 !   28.3   0.0   3.5e-10   1.5e-06       2     151 ..     683     823 ..     682     859 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.62
                      SSEEEEEEEEEECTCTHTTH.HHHHHHHHHHHSS.....TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHH CS
  Peptidase_M16_C  77 eqahlslafegpskendedd.lalavlntlLggg.....mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevil 160
                      +++ ++l+++  s++++ ++    ++l+++ + g        +L + l+ k+g  +++s    syr    +  ++ ++++ +e++v+ + 
       EHT99334.1  65 PKSLAALTLPIGSLDDPAQQpGLAHYLEHMVLMGstrypQPDSLADFLK-KHGGSHNASTA--SYR----TAYYLEVENDALEPAVDRLA 147
                      5555555555555533322212233333333333367766677777777.77765555544..445....55666666666666666555 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 2.1e-23
                      HHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHHH CS
  Peptidase_M16_C   5 edlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskendeddla 98 
                      + l +fy+++Y+++ m+ +i+++ +  e+  ++ ++fg++ +++a+ +  t++ +t  + ++++++     +++ +l + f+ p+ ++ +++  
       EHT99334.1 217 QALLDFYHTHYSANLMKAVIYSNKPLAEMATIAVNTFGRVANHNASVPAITEPVVT--EAQQGIIIHYVPAQPRKQLKIEFRIPNNSDRFRSKT 308
                      5799***************************************9888888888888..555555555555557999999999999999****** PP

                      HHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES..SCEEEEEEEEEECT...THHHHHHHHHHHHHHHHHHTS-HHHHHHH CS
  Peptidase_M16_C  99 lavlntlLgggmesrLytnlrekeglaysvsafndsyr..dsglfgisatadpe...nveevvevilkelrklkkeglteeelera 179
                        ++++++g+     L + l+ k+gla++vs + d  +   sg+f+is++++++   + +evv++++++l++l+k+g++++ +++ 
       EHT99334.1 309 DTLISYVIGNRSPNTLADWLQ-KQGLADGVSTEADPVTerTSGVFSISVSLTDKglaQRDEVVAAVFSYLAMLRKNGIDQRYFDEV 393
                      *********************.****99999998877788**************9**************************99975 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 3.5e-10
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskended 95 
                      +t++d+ +++++  + +  +  ++G+++ + + +l +++  +++ +   ++++++  + ++++  +  + ++   + + l+  ++++++ ++++
       EHT99334.1 683 ITLKDVVAYRDALIKNATPEMMVIGNLSADSVTQLGRELKQQMQCD---GTHYWHSNYLSVEKPLKANLEQHGSSTDSALAALYIPLGY-DEYQ 772
                      899*****************************************99...7888887777666666666666666688999999999999.9*** PP

                      HHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTT CS
  Peptidase_M16_C  96 dlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpen 151
                      ++a++ +   + +    ++y++lr++e+l+y v+af +     + +gi++ ++++ 
       EHT99334.1 773 SMANSAMLSQIVQP---WFYNQLRTEEQLGYAVFAFRMPVG--RQWGIGFLLQSNS 823
                      ******99999999...9******************88666..9999999888873 PP

>> Defensin_propep  Defensin propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.2e-05      0.23       1      46 [.       1      58 [.       1      63 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
  Defensin_propep  1 MRTLa.LLaAlL..LvALqaqAeplqa.........radeapaqeqpgaeDqdvaisf 46
                     MRT a L+aA+L  L+AL +qAe   +         ++++ p q q  + ++ +++ +
       EHT99334.1  1 MRTHArLIAAILlgLLALAVQAETGAGwqpvntpigKSEQDPRQYQAITLNNGMTVLL 58
                     788764778899455********99888889999999999999999888887777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 6864.23
//
Query:       EHT99335.1  [L=1125]
Description: exonuclease V (RecBCD complex), gamma chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-295  981.7   7.2   3.3e-295  981.3   7.2    1.1  1  Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
    5.4e-65  218.9   3.5    5.4e-65  218.9   3.5    2.4  3  RecC_C          RecC C-terminal domain


Domain annotation for each model (and alignments):
>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  981.3   7.2  3.6e-299  3.3e-295       1     768 []       1     807 [.       1     807 [. 0.97

  Alignments for each domain:
  == domain 1  score: 981.3 bits;  conditional E-value: 3.6e-299
                     -EEEEEESSHHHHHHHHHHHHHHS--SSSS--EEEE-SSHHHHHHHHHHHHHTTS-BESEB---HHHHHHHHHHHHSSS--SS-TT-HHHHHHHH CS
  Exonuc_V_gamma   1 mltlyqSnrlevLaellakllreeplanpfepeiilvqskgmarwLklelAekkGiaanlefplpasflwqllkavlpevpeespfskealtWrl 95 
                     m+++y+Sn+l++L++l+a++++ +pl++pf++e++lvqs+gma+wL++elA+++Giaan+efplpasf+w+++ +vlp++p es+fsk+++ W+l
      EHT99335.1   1 MFHVYHSNQLDLLKSLAARVIKLDPLDDPFASEMVLVQSPGMAQWLQMELARTFGIAANIEFPLPASFIWEMFVRVLPDIPPESAFSKASMSWKL 95 
                     9********************************************************************************************** PP

                     HHHHHHHTSSSSTHHHHHHTTSS-SSHHHHHHHHHHHHHHHHHTTSSHHHHHHHCTT..---TT--TTHHHHHHHHHHHHHHHHHTT-----SHC CS
  Exonuc_V_gamma  96 mrlLpelleeeefaplrkylskdsdqlklyqLaekiAdlFdqYlvyRpdwlaaWeageekklakleederWQaiLWralvaelkeekqeiqaran 190
                     m+ Lp ll ++efa lr+yls+d d +kl+qL+++iAdlFdqYlvyR+dwl++We+g  ++++ l e + WQa+LWr lv+++++  q + +ran
      EHT99335.1  96 MHRLPTLLLQDEFASLRHYLSDDGDRRKLFQLSARIADLFDQYLVYRADWLNSWERG--QQIEGLGEAQVWQAALWRDLVDYTDALGQPKWHRAN 188
                     *********************************************************..************************************ PP

                     CHHHHHHHHHSSTT--TS--SEEEEES-----HHHHHHHHHHTTTSEEEEEEE-S-SS--S--S-TTTSTT......................HS CS
  Exonuc_V_gamma 191 lheeflealakkekklkklPkrifvFgisslppsylevLkalskhidVhlfllnPcreyWgdivdrkqllr......................eq 263
                     l+ +f+ +l+++++++++lP+r+f+ gis+lpp yl++L+al++h+d++l+++nPcr+yWgdi+d   l++                      + 
      EHT99335.1 189 LYARFITTLEQAQTRPDNLPQRVFICGISALPPVYLQALQALGRHVDIYLLFTNPCRDYWGDIQDYAFLAKlqsrqrrrhdreeyrglfsdvaRA 283
                     *****************************************************************877777777788899999999999888756 PP

                     STT-SSSSBSS-SSHHHHHHTHHHHHHHHHHTT-.SSEEEEEE-----S-SHHHHHHHHHHH............HHH--TTSEE--TT--SSEEE CS
  Exonuc_V_gamma 264 leeeeedelleegnpLLaslGkqgrdfldlleeleeeskeidlfeeeeeeslLqqlqadile............kaedeekklaleekDrSiqih 346
                      +  +e+  ++  npLLas+Gk+grd l ll+++ e + eid+f++ ee++lL+ +q+d+l+            +   + +k++l+++DrS+ i+
      EHT99335.1 284 PALFSEQGEQHLTNPLLASWGKLGRDNLFLLSQM-ELNSEIDAFVDVEEDNLLHCMQHDLLNlqdraiigltadELAYSGQKRRLDPQDRSVAIQ 377
                     6666666677778*********************.89**********************************9987778889999*********** PP

                     EESSHHHHHHHHHHHHHHHHHHSTT--GGGEEEEESTHHHHHHHHHHHTSCSTTTT---EEE-SEETGGGHHHHHHHHHHGGGGG----HHHHHH CS
  Exonuc_V_gamma 347 sChsplREvevLhdqLlalleadptlqprDilVmvpdieayaPyIeaVFgaaederklpysiaDrsakeespllaaflelLeLpesrftasevld 441
                     +Chs++REvevL+d+Llal+eadp+l+ rDi+Vmv+di+ayaP+I+aVF++a++er+lp++i+Dr+a++++p++ afl+lL+Lp+srf  ++vl+
      EHT99335.1 378 VCHSAQREVEVLQDHLLALMEADPELKARDIIVMVADIDAYAPFIQAVFANAPAERYLPFAISDRRASQAHPAIVAFLQLLSLPDSRFVSEDVLA 472
                     *************************************************999******************************************* PP

                     HTTSHHHHHHTT--HHHHHHHHHHHHHHT--S-SSHHHHHHTT----SSSSHHHHHHHHHHHHSS-STT--SSS----TTS-SCTHHHHHHHHHH CS
  Exonuc_V_gamma 442 lLevpavarrfgldeedleqlrewlaeagirwGldaehreelglpadeqnswrfgLdRlllGyalgeengllegilpydevegseaellgklael 536
                     lL+vpa+a++f++de+ l  lr+w++e+g+rwGld ++ e+l+lp + q++wrfgL+R+llGya+++++g ++gilpyde++g+ ael+g+lael
      EHT99335.1 473 LLDVPALANHFSIDESGLRLLRRWVSESGVRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYAMESQHGDWQGILPYDESSGLVAELAGHLAEL 567
                     *********************************************************************************************** PP

                     HHHHHHHHHHSSS-B-HHHHTTHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTT--S-B-HHHHHHHHHHHHHH-EE-TTTTSSSEEEE CS
  Exonuc_V_gamma 537 lerLekwrqrlskprtleeWlerlselledffaedeeeeeelqelrealaelaeeaaaakfeqelslevvrelleerlsqesasqrfltGkvtfc 631
                     l+rL++wrq ls+pr+le+Wl  ++ell++ff++d+e+e++l +++e++++l+e + +a f++++++ ++r+ l+ rl+q++ sqrfl+G+++fc
      EHT99335.1 568 LSRLNHWRQVLSEPRPLEAWLPLCRELLNAFFTPDTETEAALLLVEEQWKTLIEYGMDARFNEAIPVVLLRDDLRGRLDQQRISQRFLAGQINFC 662
                     *********************************************************************************************** PP

                     E--TT----EEEEEEE--BTTTSS------SS-HHHHS--TT---HHHHHHHHHHHHHHHEEEEEEEEEESBETTTTEB--B-HHHHHHHHHHHT CS
  Exonuc_V_gamma 632 tllpmrsiPfrvvclLGlndgdfPrqdepagfDlmakeprkgDrsrrdddrylfLeallsAreaLyiSYvgrsirdnserpPSvlvselldylaq 726
                     tl+pmrsiPf vvclLG+ndg +Pr+ +p gfDlm+++ rkgDrsrrdddrylfLeal+sA+++LyiSY+gr i+dn+er+PSvlv+ell+y+ q
      EHT99335.1 663 TLMPMRSIPFSVVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYLFLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELLEYIGQ 757
                     *********************************************************************************************** PP

                     TEE-S......HHHHHHHHH.HEEE.--SSTTSGGGG.SSSTT--S-GGG CS
  Exonuc_V_gamma 727 nfalk......geealkalk.lvve.hplqpfspknFeeksrlfsydkew 768
                     +++l+       +++ ++++  + + h+ +pf p+nF+  s  +s+++ew
      EHT99335.1 758 SLYLPgdedreLDDSAQRVRaHLEHlHSRMPFAPENFQPASAAHSFAREW 807
                     *****999888455555555655667***********************9 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.83   7.5e+03      87     179 ..     559     577 ..     509     591 .. 0.54
   2 ?   -2.5   0.0      0.41   3.7e+03     145     175 ..     773     810 ..     729     823 .. 0.71
   3 !  218.9   3.5     6e-69   5.4e-65       2     198 ..     831    1050 ..     830    1051 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.83
      RecC_C  87 elleqvealaealrallgeepleslevdldlggtgLtgtldglrergllrwrpsklkakdllraWlehLalcalpaeeArelLaellalyrqG 179
                 el+  +++l+++l ++                                                                          rq 
  EHT99335.1 559 ELAGHLAELLSRLNHW--------------------------------------------------------------------------RQV 577
                 3333333333333333..........................................................................333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.41
      RecC_C 145 kdllraWlehLalca.......lpaeeArelLaellal 175
                  +++ra lehL   +        pa++A++  +e+l +
  EHT99335.1 773 AQRVRAHLEHLHSRMpfapenfQPASAAHSFAREWLPA 810
                 46677777777744477777765566666666666655 PP

  == domain 3  score: 218.9 bits;  conditional E-value: 6e-69
      RecC_C    2 eelelddLirFlrnParaFlrqrLgvrleeeeeeleddepfeldgLeryqlkdrllealla..e..ellarlrargeLPpgafGelaleelleqvea 94  
                  e+l++++++rF+r+P+ra+++qrLgv++  ee+el+d+epf+ld Leryq++++ll+al +  +  +l+a+ ra+g+LP+gafGel ++ ++e++++
  EHT99335.1  831 ETLAFEQFLRFWRHPVRAWFQQRLGVNFWLEENELPDSEPFALDSLERYQINAQLLNALVTgeDtdRLYAHHRAAGNLPYGAFGELFWQAQREEMQE 927 
                  68999********************************************************751678****************************** PP

      RecC_C   95 laealrallgeepleslevdldlggtgLtgtldglrergllrwrpsklkakdllraWlehLalca.....................lpaeeArelLa 170 
                   a+++  +++e   es+e++l l+g++Ltg+l++++++gllrwrp+ l+ +d l +WlehL++ca                     +p++eA++ La
  EHT99335.1  928 VAAEVITQRSE--GESREINLALAGVKLTGWLTQVQSDGLLRWRPGVLNINDGLLLWLEHLVYCAlggdgksrmfgrqhsywcfpaVPPDEATDALA 1022
                  *****888777..59********************************************************************************** PP

      RecC_C  171 ellalyrqGlrqpLpffpktalayleal 198 
                   ++++y qG+r+pL +++k++ a+l+a+
  EHT99335.1 1023 RYMQGYLQGMREPLMLLTKSGGAWLNAC 1050
                  **************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 7923.18
//
Query:       EHT99336.1  [L=108]
Description: putative prepilin peptidase-dependent protein C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-19   68.9   2.4    6.3e-19   68.5   2.4    1.2  1  T2SSppdC  Type II secretion prepilin peptidase dependent prot
  ------ inclusion threshold ------
      0.025   14.1   1.8      0.046   13.3   1.8    1.4  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> T2SSppdC  Type II secretion prepilin peptidase dependent protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   2.4   7.1e-23   6.3e-19       1      79 [.      40     108 .]      40     108 .] 1.00

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 7.1e-23
    T2SSppdC   1 YqqaLlqgfqqqwqqrqawrlahqqlelyeaqlakaelslppgWqvelqeqtssagCvsvtvtvtspqgrqvklsrlfC 79 
                 Y+++L+ gf qqwqqr+awr+a+q+l  +e           +gWq +  ++t  +gC   tvtv+ p +rq++l+rl+C
  EHT99336.1  40 YHRVLTLGFSQQWQQREAWRVAEQRLLGREM----------AGWQTRSDKKTGPGGCTLETVTVSGPHQRQASLTRLHC 108
                 *******************************..........************************************** PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.8   5.1e-06     0.046       5      26 ..      16      37 ..      15      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-06
    N_methyl  5 rGFTLiElLvalaIlaillaaa 26
                +GF+L E L al+++a+  +a+
  EHT99336.1 16 AGFSLPEALFALLLMAVSTSAL 37
                7****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 820.16
//
Query:       EHT99337.1  [L=134]
Description: hypothetical protein CKS_1349 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-26   90.8   2.9    9.1e-26   90.5   2.9    1.0  1  DUF2509   Protein of unknown function (DUF2509)


Domain annotation for each model (and alignments):
>> DUF2509  Protein of unknown function (DUF2509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   2.9   5.1e-30   9.1e-26       2     130 .]      15     133 ..      14     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 5.1e-30
     DUF2509   2 llvlglllLkalqqqlesalalvadeqrylkafaqaesaLawgksqsWslksseewqCrqlaeeklkaClrrlsedellllkgeaalaeeeklvlYqlv 100
                 +l+ g + L+a  + l++ + +vadeq++++ f qa+saL+wg++++W+++  +   C+++++  ++aCl r+ +de  llkge +   +    l+ +v
  EHT99337.1  15 ILLTGGITLQASREMLAQGMFIVADEQHAIQGFWQAQSALQWGLTLTWPTQ--PPATCQRESQYGWQACLHRV-DDEKGLLKGETQ---KGDKALWYWV 107
                 67889999*******************************************..9*******************.9**********8...55567999** PP

     DUF2509 101 klkekededklvalesGWlDFcPekeeklC 130
                 +l+++    k+++l++GW D+cP+++ ++C
  EHT99337.1 108 RLEGS----KISPLPQGWIDYCPQSAPEQC 133
                 ****9....9***************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1048.85
//
Query:       EHT99338.1  [L=264]
Description: thymidylate synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     9e-127  421.7   0.0     1e-126  421.6   0.0    1.0  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.6   0.0  5.6e-131    1e-126       1     268 []       2     264 .]       2     264 .] 0.99

  Alignments for each domain:
  == domain 1  score: 421.6 bits;  conditional E-value: 5.6e-131
                      HHHHHHHHHHHHH-EEEE-TTSSEEEEEEEEEEEEEGGGCB----SSST--HHHHHHHHHHHHTT--BTHHHHTTT--TTHHHHHHTTB-SSSH CS
  Thymidylat_synt   1 kqYldlvrkileeGeekedRtgtgtisvfgaqlrfdlsegefPllTtkkvflksvieEllWflsgetnvkeLqekgvkiWdewadeegdlgpvY 94 
                      kqYldl+r +l+eG+ k+dRtgtgt+s+fg+q+rf+l++g fPl+Ttkk++++s+i+EllWfl+g+tn+ +L+e++v+iWdewade+g+lgpvY
       EHT99338.1   2 KQYLDLMRYVLNEGTPKSDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKKCHVRSIIHELLWFLQGDTNIGYLKENNVSIWDEWADEQGNLGPVY 94 
                      79*************************************9.***************************************************** PP

                      HHHHHHBTSTTTSSB-HHHHHHHHHHHSTT-ST-EEE---GGGGGGSSS--SEEEEEEEE..SEETEEEEEEEEEEEETTTHHHHHHHHHHHHH CS
  Thymidylat_synt  95 GkqwrkfkaeegkkidqlakvidqlkenpdsRriivsawnpaeldkmaLppChvlfqfyvkdkkegkLslqlyqRSaDvflGvpFNiasyalLt 188
                      Gkqwr++++++g++idq++kvi+q+k++pdsRriivsawn+ eld+maL pCh++fqfyv   ++g+Ls+qlyqRS+D+flG+pFNiasyalL+
       EHT99338.1  95 GKQWRSWGTARGEEIDQITKVIEQIKRDPDSRRIIVSAWNVGELDEMALAPCHAFFQFYV---ADGRLSCQLYQRSCDIFLGLPFNIASYALLV 185
                      ************************************************************...5668*************************** PP

                      HHHHHHHT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEE--SSTHSGGG--GGGEEEES----SXXXXXXX. CS
  Thymidylat_synt 189 hmlaqvtglkpgelihtigdaHiYsnhveqvkeqlereprelpklelnkekkvsiedfeledfelenYkphpkikakvav 268
                      hm+aq+++l++g++++t gd+H+Ysnh+eq++ ql+repr+lpkl +++++  s++d++++dfe+e+Y+php+ika+vav
       EHT99338.1 186 HMVAQQCDLEVGDFVWTGGDTHLYSNHLEQARLQLTREPRPLPKLVIKRKPA-SLFDYRFDDFEIEGYDPHPAIKAPVAV 264
                      ***********************************************97776.*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2093.53
//
Query:       EHT99339.1  [L=293]
Description: phosphatidylglycerol-prolipoprotein diacylglyceryl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-78  261.8  10.7    5.1e-78  261.6  10.7    1.0  1  LGT           Prolipoprotein diacylglyceryl transferase
  ------ inclusion threshold ------
      0.033   13.8   0.1        5.1    6.6   0.0    2.3  2  DUF4328       Domain of unknown function (DUF4328)
      0.038   13.7   0.1        4.1    7.2   0.0    2.7  2  Adeno_E3_CR2  Adenovirus E3 region protein CR2
          1    9.8   9.5        1.3    9.5   1.4    3.8  3  DUF202        Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> LGT  Prolipoprotein diacylglyceryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.6  10.7   1.1e-81   5.1e-78       1     242 []      13     279 ..      13     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 261.6 bits;  conditional E-value: 1.1e-81
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT   1 pvafsigpleirwYgllialgfllavllakrrakke..glkeekdkvddlliyavilgii.GaRlgyvlfY....ylsnpleilkiwegGlaihGglig 92 
                 pv+fsigpl+++wYgl++++gf++a++la rra+k   g+k+  ++v++ll+ ++ lg+  G+R+gyvlfY    +l npl ++k+w+gG+++hGglig
  EHT99339.1  13 PVIFSIGPLSLHWYGLMYLVGFVFAMWLAVRRANKPgsGWKK--EEVENLLYAGF-LGVFlGGRIGYVLFYnlplFLVNPLYLFKVWDGGMSFHGGLIG 108
                 89*********************************9555555..66*********.99999**********9988779********************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxx.............xxxxxx RF
         LGT  93 vllalllyakkkklsflkvlDivapvvalgqaigRlGNfingelyGkptdlpwg................lvfkkaeelp.............lprhPt 162
                 v+l++l++a++ k +f++v+D++a ++++g++ gRlGNfingel+G++ d ++                          +             lprhP+
  EHT99339.1 109 VILVMLIFARRTKRHFFQVADFIASLIPFGLGAGRLGNFINGELWGRV-DPNFRfamlfpgsrsedialaA--------NnpqyqallntygvLPRHPS 198
                 *********988**********************************54.4333346666666665554431........0333333445555566**** PP

                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT 163 qlYes.lenlllflilllllskkkkkkkkdgevfglylilyglgRffiEflR.tds...lllgslrmgqllsiplvlagialliv 242
                 qlYe  le+++lf+il l+++  k+  +  g v+gl+li+yg++Rf++Ef+R +d    ll+g+l+mgq+ls+p+++ag++++i+
  EHT99339.1 199 QLYELfLEGIVLFIILNLFIR--KP--RPMGSVSGLFLIGYGCFRFIVEFFRqPDAqlgLLTGGLSMGQILSLPMIIAGVIMMIW 279
                 ******************774..33..457**********************9995555656*********************98 PP

>> DUF4328  Domain of unknown function (DUF4328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1    0.0048        21      22      45 ..      23      46 ..      18      51 .. 0.87
   2 ?    6.6   0.0    0.0011       5.1      24      45 ..     263     286 ..     253     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0048
     DUF4328 22 llalllllaaavvflvWlrraran 45
                l + +l+ + + vf++Wl+ +ran
  EHT99339.1 23 LHWYGLMYLVGFVFAMWLAVRRAN 46
                6677899999************98 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
     DUF4328  24 all..lllaaavvflvWlrraran 45 
                 ++l   +++a+v +++W +r+r +
  EHT99339.1 263 QILslPMIIAGVIMMIWAYRRRPQ 286
                 44433789*************976 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00092       4.1      15      33 ..     105     123 ..     104     126 .. 0.88
   2 ?    3.5   0.0     0.013        59      17      31 ..     270     284 ..     266     291 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00092
  Adeno_E3_CR2  15 GlaiIiicmlyYaCcYrkh 33 
                   Gl+ +i++ml++a + ++h
    EHT99339.1 105 GLIGVILVMLIFARRTKRH 123
                   78889********999998 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.013
  Adeno_E3_CR2  17 aiIiicmlyYaCcYr 31 
                   +i    m+++a ++r
    EHT99339.1 270 IIAGVIMMIWAYRRR 284
                   444467888887665 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.19   8.5e+02      41      61 ..      24      44 ..       9      80 .. 0.77
   2 ?   -0.4   0.2      0.37   1.7e+03      25      32 ..     111     118 ..      84     147 .. 0.57
   3 ?    9.5   1.4   0.00029       1.3      29      63 ..     243     285 ..     203     290 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.19
      DUF202 41 kilglilivlgiltllvglvr 61
                ++ gl+++v  +++++++++r
  EHT99339.1 24 HWYGLMYLVGFVFAMWLAVRR 44
                566666666666666666665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.37
      DUF202  25 lallrffl 32 
                 l++l f +
  EHT99339.1 111 LVMLIFAR 118
                 22222211 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00029
      DUF202  29 rffl.........tgepsalgkilglilivlgiltllvglvryl 63 
                  ff+         tg+ s +g+il+l +i++g+++++++++r  
  EHT99339.1 243 EFFRqpdaqlgllTGGLS-MGQILSLPMIIAGVIMMIWAYRRRP 285
                 244455555555344433.499*****************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2262.84
//
Query:       EHT99340.1  [L=748]
Description: PTS system nitrogen assimilation enzyme I component/putative sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-104  347.5   0.0     7e-104  347.1   0.0    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    6.6e-23   81.1   0.7    1.7e-22   79.7   0.7    1.8  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    2.4e-17   63.8   0.1    8.2e-17   62.1   0.1    2.0  1  GAF              GAF domain
      7e-16   57.7   0.1    1.4e-15   56.8   0.1    1.5  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
    4.2e-15   56.2   0.0    8.5e-15   55.3   0.0    1.6  1  GAF_2            GAF domain
    7.4e-10   39.3   0.2    6.1e-09   36.3   0.2    2.3  1  GAF_3            GAF domain
  ------ inclusion threshold ------
      0.037   14.0   0.0        1.6    8.6   0.0    2.2  2  Lipase_GDSL      GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.1   0.0  2.7e-107    7e-104       9     293 ..     424     707 ..     417     708 .. 0.98

  Alignments for each domain:
  == domain 1  score: 347.1 bits;  conditional E-value: 2.7e-107
                      CCCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHHHHHHHHHHHHHTTTSEEEEEXXXSSCCGGSGGCHHHH.X CS
  PEP-utilizers_C   9 tllavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteeeqaeaykkvleamngrpvvvRtlDiggdkelpelkeepee 102
                      + +a + +g++i+v++N++++ ++e+ + + ++GiGL+RtE+ fm ++ +p+eeeq+++y+++l+ ++++pv++RtlDig+dk+lp++    +e
       EHT99340.1 424 DRPAELRSGQRIQVMLNAGLSPEHEQTQGSWVDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQLFHDKPVTLRTLDIGADKQLPYM--PISE 515
                      678999**********************************************************************************..5569 PP

                      SXGGGSSXTHHHHCCSHHHHHHHHHHHHHHCC.CCEEEEEESSXXSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHHHTHHHHC CS
  PEP-utilizers_C 103 vNPmlGfRgirlglsepelfetqlrAllrasa.agkleimlPmvasveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaalladkla 195
                      +NP+lG+Rgirl+l++pe+f  q+rA+lra+a  g+l+i+lPm+++++e++eak++i+++ +e+e++  +  +k ++GiMiEvps+ +++++la
       EHT99340.1 516 ENPCLGWRGIRLTLDQPEIFLVQVRAMLRANAaSGNLSILLPMISHIDEIDEAKRLIQRAGAEVEEMLGYAIPKPRIGIMIEVPSMLFMIPHLA 609
                      9******************************9789********************************999999********************* PP

                      TTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGHHHHHHHH CS
  PEP-utilizers_C 196 kevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagdpsavellvglGldelSmsaasvpaaraal 289
                       +vdF+S+GtNDLtQy+lavdR+n++va+lyd+l+pa+lr+++ +  +a+ ++l++ +CGe+agdp++v+llvg+G+ +lSm+ ++v +++++l
       EHT99340.1 610 SRVDFISVGTNDLTQYLLAVDRNNTRVANLYDSLHPAMLRALQAISVEAHLANLELCLCGEMAGDPTCVALLVGMGYHHLSMNGKNVSRVKYLL 703
                      ********************************************************************************************** PP

                      HCTT CS
  PEP-utilizers_C 290 aqve 293
                      ++++
       EHT99340.1 704 RHLD 707
                      9976 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.7   6.7e-26   1.7e-22       2     116 .]     173     294 ..     172     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 6.7e-26
                      -EEEE-SEEEEEEE........---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHHHHH CS
  PEP-utilisers_N   2 GiaaspGiaiGkav........eveveeeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleeveerIr 84 
                       iaa+pG+a+++ +        +   +++++++ d+ +e+erl  A+ ++++e+++ +++    +++e+aaif+ + +ll D  l++++ ++I+
       EHT99340.1 173 AIAAAPGVAVAPGWvdetqpllD---QVSAASTLDPLRERERLSLAMSEAASEFRRFSKRFsasAQKESAAIFDLYSHLLTDARLKKDLFDEIE 263
                      699************99875432...56677788899*******************9988898877788************************* PP

                      HHT--HHHHHHHHHHHHHHHHHHTT-HHHHHH CS
  PEP-utilisers_N  85 egglnaeaAveevveefaaqfealddeylreR 116
                       g   ae+Av++v+e+faaqf++l d+yl+eR
       EHT99340.1 264 RGS-VAEWAVKTVIEKFAAQFASLTDSYLKER 294
                      666.8*******************999****9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.1   3.2e-20   8.2e-17       2     131 ..      18     152 ..      17     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 3.2e-20
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEE........CEEEEECC.....EEEET..TSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHT CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhy........dipqasrw.....lfmkn..grgicgqvlatgqplvipdstpdprfaqynrrdllenm 85 
                 l e+ld++v+e++ +++ + +++yl+d+d  +y        +            +      ++gi+g v +  +p++++d++ +p f        +++ 
  EHT99340.1  18 LNEALDILVNEICLAMETEVCSVYLADHDHRCYylmatrglK------KprgltVK--LafDEGIVGLVGRLAEPINLADAQSHPSFKY---IPSVKEE 105
                 6899*********************66666555353333222......23332222..2468889999999*********999999988...78999** PP

                 TESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHH CS
         GAF  86 girsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvav 131
                  +rs+l+vP++++++l+G+lv+ ++ + +f+++e+ +l +la+q+a 
  EHT99340.1 106 RYRSFLGVPIISRRQLLGVLVVQQREHrQFDESEESFLVTLATQLAA 152
                 ************************44457***************996 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1   5.4e-19   1.4e-15       3      73 .]     320     391 ..     318     391 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 5.4e-19
                    -S-EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   3 eegvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +e  +Lva+e+++  +a+++  ++aGiv+  G+++SHaAi+ r++giP+V+g++     + +++l++vDg++G
     EHT99340.1 320 PERFVLVADELTATTLAEIPhdRLAGIVVRDGAANSHAAILTRAMGIPTVMGADIQP-GQLNKRLLIVDGYRG 391
                    6778***************************************************99.88888********99 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   3.3e-18   8.5e-15       3     137 ..      17     154 ..      15     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.3e-18
                 HHHHHHHHHHHHH.HHSS..EEEEEEE-TTS-.EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHH.HHHHTT--EEEEEE CS
       GAF_2   3 dleelldlvldel.velgaalgyillvdddgg.lrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglp.aghaglrsflavPl 98 
                  l+e ld++++e+ + +  +++ ++l d+d++ ++l a ++  +  g  +  +++eg+vg + r  +p+ l+d +++p+ k  p   ++++rsfl+vP+
  EHT99340.1  17 RLNEALDILVNEIcLAMETEVCSVYLADHDHRcYYLMATRGLKKPRGLTVKLAFDEGIVGLVGRLAEPINLADAQSHPSFKYIPsVKEERYRSFLGVPI 115
                 57899999999995558889**99999988885667788888888888887788********************************************* PP

                 -TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  99 isegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 is+ +++Gvl+++  + ++fde++ ++L +la+q+a  +
  EHT99340.1 116 ISRRQLLGVLVVQQREHRQFDESEESFLVTLATQLAALL 154
                 **889*******8777777*****************876 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.2   2.4e-12   6.1e-09       3     124 ..      19     151 ..      17     156 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.4e-12
       GAF_3   3 dellekllkllvkllgaevgalllldedgn..klqvaagwdgkpalse...sld.edsalar.........ralssgevvsepsfaeedglpdraalav 86 
                  e l++l+ +++ ++ +ev++++l d d +  +l +++g   kp+  +   ++d     l            a+s+  + + ps+ e    + r+ l v
  EHT99340.1  19 NEALDILVNEICLAMETEVCSVYLADHDHRcyYLMATRGL-KKPRGLTvklAFDeGIVGLVGrlaepinlaDAQSHPSFKYIPSVKE---ERYRSFLGV 113
                 6889********************9988776788888888.4444433446554322222221111121122223333333355444...56699999* PP

       GAF_3  87 PLvagrqviGvlalastkprafdaedlelleslArqia 124
                 P++++rq++Gvl++++++ r+fd++++++l +lA+q+a
  EHT99340.1 114 PIISRRQLLGVLVVQQREHRQFDESEESFLVTLATQLA 151
                 ****99******************************99 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.035        89     144     175 ..     220     251 ..     196     292 .. 0.86
   2 ?    8.6   0.0   0.00063       1.6      74     106 ..     614     646 ..     521     671 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHHHHHHCTEEEECHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 144 nefvgeynqrlndlaekdgfavvDlydelqgl 175
                  +   + +++r ++ a+k+  a +Dly++l   
   EHT99340.1 220 ASEFRRFSKRFSASAQKESAAIFDLYSHLLTD 251
                  555678999******************98776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00063
                  EEE--CTCC-EECSSCTTTCEEHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  74 iislGtNDsnlgkkstdaakkeaeeyiknlrea 106
                  +is+GtND++++ +  d++++ +++++++l+ a
   EHT99340.1 614 FISVGTNDLTQYLLAVDRNNTRVANLYDSLHPA 646
                  46**************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5217.68
//
Query:       EHT99341.1  [L=175]
Description: adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-28   96.8   0.1    1.3e-27   96.4   0.1    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.1   7.3e-32   1.3e-27       2     130 ..       7     146 ..       6     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 7.3e-32
                 EEEEEEEEEEETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.............EEEEEEE CS
       NUDIX   2 lrravgvvllnekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.............eheilyv 87 
                 +r++vg+v++n++g+vL++rr+    ++W++P+G++ pgEt+e+A+ REl+EE+Gl  +++++l+++++++ y+ p++              ++++l+ 
  EHT99341.1   7 YRPNVGIVICNRQGQVLWARRF--GQHSWQFPQGGINPGETAEQAMYRELFEEVGLHRKDVRILASTRNWLRYKLPKRLvrwdtkpvcigqkQKWFLLQ 103
                 89********************..7777****************************99********************9******************99 PP

                 EEEEECSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  88 fleevegelepn.denevsevrwvpleellkeklaaesrkllpw 130
                 + +++ + + +   ++e++++rwv++      + ++++r+++++
  EHT99341.1 104 LMCSDADINVQHsSTPEFDGWRWVSFWYP-VRQVVSFKRDVYRR 146
                 9965555555556*********8888766.66667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1352.23
//
Query:       EHT99342.1  [L=225]
Description: methyl-directed mismatch repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-34  116.1   0.0    8.4e-34  115.7   0.0    1.1  1  MutH       DNA mismatch repair enzyme MutH
  ------ inclusion threshold ------
       0.26   11.1   0.0       0.33   10.7   0.0    1.2  1  MvaI_BcnI  MvaI/BcnI restriction endonuclease family


Domain annotation for each model (and alignments):
>> MutH  DNA mismatch repair enzyme MutH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.0   9.3e-38   8.4e-34       1     103 []      56     154 ..      56     154 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 9.3e-38
        MutH   1 lgaeansksepDfkelgvELKttPlkknkknklkakErlvvsiidleeiakeefetshvlkKlkkvllvpyegereipvkerkigkaklwspseedeki 99 
                 lga+a+sk+e+Df++lg+ELKt+P++++    +k++E+++v++++l+ +++ ++e+shv++Kl++vl++p+eger+ip  er++g + lwsp++++e +
  EHT99342.1  56 LGASAGSKAEQDFAHLGIELKTIPVDRE----GKPLETTFVCVAPLTGNSGVTWENSHVRHKLARVLWMPVEGERDIPPGERRVGAPLLWSPTAQEEDM 150
                 799*************************....******************************************************************* PP

        MutH 100 lkqD 103
                 l+qD
  EHT99342.1 151 LRQD 154
                 ***9 PP

>> MvaI_BcnI  MvaI/BcnI restriction endonuclease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.7e-05      0.33      17      51 ..      42      78 ..      36     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.7e-05
   MvaI_BcnI 17 rkgdggvGktLEdlLGieenssklPDyk..giElKtk 51
                ++++g vG++LE  LG +  s+ + D++  giElKt 
  EHT99342.1 42 KRDKGWVGMLLEWHLGASAGSKAEQDFAhlGIELKTI 78
                567799********************96559****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1808.44
//
Query:       EHT99343.1  [L=236]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-53  180.3  14.2    3.4e-53  180.0  14.2    1.1  1  TerC      Integral membrane protein TerC family
  ------ inclusion threshold ------
        0.6   10.3   5.6       0.68   10.1   0.1    2.8  2  DUF3099   Protein of unknown function (DUF3099)


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0  14.2   3.8e-57   3.4e-53       2     180 ..      16     202 ..      15     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 180.0 bits;  conditional E-value: 3.8e-57
        TerC   2 tlvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlvlRillillavallel..............fdlilligglfLlytavkellekrlenk 86 
                 tl++le+vL+iDN+++++l+v+klp++qq++a+++G++gA+++R+ l+++++++++l               dlill+gglfLl+++  e++e +    
  EHT99343.1  16 TLTILEVVLGIDNIIFLSLVVAKLPKHQQARARRIGLMGAMLMRLGLLASIAWVAKLtnplftlmdhpfsaRDLILLFGGLFLLWKSSMEIHETI---- 110
                 799**********************************************************99999996544*******************9854.... PP

        TerC  87 lvkeekkkkkktkstllavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvklvle 180
                   + e+ ++k++ +++l +++qi+l+D++fslDSv++av+++++lfi+++av++++l+++f+a+ + ++++r+p +k+lal++l+l+g++l+le
  EHT99343.1 111 --EGEETEHKSNVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVLMMMFAARSIGEFVDRHPSVKMLALSFLILVGFTLILE 202
                 ..7788888888999****************************************************************************997 PP

>> DUF3099  Protein of unknown function (DUF3099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   7.6e-05      0.68       5      56 ..      37      98 ..      34     103 .. 0.75
   2 ?    0.8   1.8     0.061   5.4e+02      37      59 ..     146     169 ..     123     174 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.6e-05
     DUF3099  5 AarslsedlrrRqrrYlilmgiRvvclilavvlvsvengw..........lalvllvlavvL 56
                A+ + +++ r+R++  +  m++R+ +l   +++ ++ n++            l+ll+++++L
  EHT99343.1 37 AKLPKHQQARARRIGLMGAMLMRLGLLASIAWVAKLTNPLftlmdhpfsaRDLILLFGGLFL 98
                78899**************************9988855542444444444455555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.061
     DUF3099  37 lvsv.engwlalvllvlavvLPwv 59 
                 +v +  ++ ++++++v+av++  +
  EHT99343.1 146 AVGLsDHLFIMMAAVVIAVLMMMF 169
                 344445666777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1968.19
//
Query:       EHT99344.1  [L=72]
Description: uncharacterized DUF903 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-23   80.7   3.3    6.1e-23   80.5   3.3    1.1  1  DUF903    Bacterial protein of unknown function (DUF903)
  ------ inclusion threshold ------
      0.012   16.0   1.8       0.02   15.4   1.8    1.3  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s
      0.036   13.7   1.2       0.36   10.5   0.2    2.0  2  CopK      Copper resistance protein K
      0.092   11.9   0.0        0.1   11.7   0.0    1.0  1  dCache_2  Cache domain


Domain annotation for each model (and alignments):
>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   3.3   1.4e-26   6.1e-23       1      49 []      23      71 ..      23      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 1.4e-26
                EEEEEETTS-EEEEES--EE-TTTSCEEEEBTTS-EEEEEGGGEEEEEE CS
      DUF903  1 pyvittkDGqtivtdgkPelDkdtGmyeYeDeeGkevqInkddVkqike 49
                +yv++tkDG++i+t+gkP +Dk+tG+++Y+D++G++vqIn d+V++i+e
  EHT99344.1 23 DYVMATKDGRMIMTEGKPSIDKETGLVQYTDQSGHTVQINSDEVSTIIE 71
                6**********************************************98 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.8   4.4e-06      0.02       3      18 .]       6      21 ..       5      21 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.4e-06
      LPAM_1  3 KillalgalllLsGCs 18
                Ki+la++a+++L GCs
  EHT99344.1  6 KIILAAVAAVTLGGCS 21
                9**************9 PP

>> CopK  Copper resistance protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   7.9e-05      0.36      39      55 ..      22      38 ..      18      41 .. 0.88
   2 ?    2.5   0.0     0.025   1.1e+02      46      58 ..      54      66 ..      38      71 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.9e-05
                TT-EEEBTTS-EEEEET CS
        CopK 39 egavmeTkDgqkiimkg 55
                ++ vm TkDg+ i+++g
  EHT99344.1 22 SDYVMATKDGRMIMTEG 38
                6889**********987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.025
                TTS-EEEEETTEE CS
        CopK 46 kDgqkiimkgdEv 58
                + g+++ +++dEv
  EHT99344.1 54 QSGHTVQINSDEV 66
                2377888888887 PP

>> dCache_2  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05       0.1      78     130 ..       5      58 ..       2      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
    dCache_2  78 kklikealrsirydggegyyfiidskgtlilhpdspsleG.knlldlkdkdGry 130
                  k i++a++++++ g +  y  ++++g++i+   +ps++  + l ++ d++G+ 
  EHT99344.1   5 SKIILAAVAAVTLGGCSSDYVMATKDGRMIMTEGKPSIDKeTGLVQYTDQSGHT 58 
                 678999******9999**********************9879999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 539.37
//
Query:       EHT99345.1  [L=346]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-73  247.3   0.0      2e-73  247.2   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.016   15.4   0.2      0.044   13.9   0.1    1.8  2  YdiH          Domain of unknown function


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   0.0   2.3e-77     2e-73       2     292 ..      16     337 ..      15     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 247.2 bits;  conditional E-value: 2.3e-77
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.......TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....--SSSTTSSSS-HH... CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY.......gkgqseellGealkksrkkreeviiatKv....dlrdaeiksglske... 84 
                   lglGt+++g   ++s+++a + l+ a++ Gin++DtAe+Y        +g  e+++G +lkk  ++r+++i+a+Kv    +     ++++++++   
    EHT99345.1  16 LGLGTMTFGE--QNSEADAHAQLDLAISSGINLIDTAEMYpvpprpeTQGLTEKYIGSWLKK-TGSRDKIILASKVagptR----GNDASIRPNmal 105
                   9********7..8*************************************************.*************66663....444444444444 PP

                   ...HHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.................HHHHHHHHHHHHHTTSEEEEEEES--.HHHHHHH...HHTTT--EE CS
  Aldo_ket_red  85 ...niresleeslkrLgtdyvDllllHrpdpslp................sieevldaleelvkeGkiraiGvSnfs.veqleka...kkkkkvkiv 158
                      nire+l++slkrL+tdy+Dl++lH+p++++                  ++e+l+al+e v++Gkir+iGvSn++ ++ ++ +   +k++  +iv
    EHT99345.1 106 drkNIREALDASLKRLNTDYIDLYQLHWPQRQTNffgklgyqysassvpvTLLETLEALAEQVRAGKIRYIGVSNETpWGVMRYLqlaEKHELPRIV 202
                   455**************************************************************************99999999**9********* PP

                   EEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTT CS
  Aldo_ket_red 159 avqveynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryals 253
                   ++q+ y+ll++ +e gl+e  +++gv l ays+l+ G l+gky + +++  + ++  + r+     ++ ++a+ e+ +la++h ++++q+al+++ +
    EHT99345.1 203 SIQNPYSLLNRSFEVGLAEISQHEGVELLAYSCLAFGTLSGKYLNGAQPA-GARNTLFSRFtrYSGEQSQLAVAEYVALANKHQIDPSQMALAFVRQ 298
                   ********************************************999976.55666666666777788899************************** PP

                   STT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 254 qpavgivipgasnieqlednldalelklseeevaeldel 292
                   qp+v+++++ga++++ql+ n+d+ +l+ls+e ++el+++
    EHT99345.1 299 QPFVSSTLLGATTLDQLKINIDSANLTLSSEILEELEAI 337
                   ***********************************9987 PP

>> YdiH  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.99   8.9e+03      31      44 ..     118     131 ..     116     132 .. 0.80
   2 ?   13.9   0.1     5e-06     0.044       4      53 ..     285     334 ..     282     340 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.99
        YdiH  31 lkllelefadllal 44 
                 lk+l+ ++ dl  l
  EHT99345.1 118 LKRLNTDYIDLYQL 131
                 89999999999765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5e-06
        YdiH   4 eldPtqlaieflrrdq...svlsPaqylkklkllelefadllalsslelkeei 53 
                 ++dP q+a+ f+r+ +   s l  a  l +lk ++++ a+ l+lss  l ee+
  EHT99345.1 285 QIDPSQMALAFVRQQPfvsSTLLGATTLDQLK-INIDSAN-LTLSSEIL-EEL 334
                 89************983334455667777776.4666676.58988544.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2919.82
//
Query:       EHT99346.1  [L=418]
Description: PLP-binding diaminopimelate decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-56  191.7   0.0    1.7e-56  191.4   0.0    1.1  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    2.1e-25   88.8   0.0    2.4e-25   88.6   0.0    1.3  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
  ------ inclusion threshold ------
       0.15   11.1   0.1       0.23   10.4   0.1    1.2  1  LuxC             Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   0.0   2.8e-60   1.7e-56       5     247 .]      36     273 ..      32     273 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.4 bits;  conditional E-value: 2.8e-60
                    HHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTG..GGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHHH CS
  Orn_Arg_deC_N   5 erklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsp..eriifanpckqreelryalekgvkvvtvdnveelekl 98 
                    +++  +  +a++   v +a+Ka+s++++l+l+++ G+++d++S +E+e++l ag+ p  ++i+f++++ ++ +l +++e +v  v++++v++l++l
     EHT99346.1  36 IQQRIAQLHAFD--VVSFAQKACSNTHILRLMKSAGVKVDSVSLGEIERALVAGFTPggDDIVFTADVLDEPTLARVAELKVP-VNAGSVDMLHQL 128
                    555555566666..899***************************************6559***********************.************ PP

                    HHHHCCEEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHH.HHT---S CS
  Orn_Arg_deC_N  99 aklapeakvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdela.elGvklk 193
                      ++p++ v+lRi++++ +++++ ++tgge+sK+G++  ++++a+++a+++ +l l+G+++H+GSgv+     ++++++++ +++ l+  +G++l+
     EHT99346.1 129 GAVSPGHAVWLRINPGFGHGHSQKTNTGGENSKHGIWP-SDLPAAQAAIEQYGLRLIGIHMHIGSGVD-----YAHLQQVCDAMVDLVvAFGQDLE 218
                    **************************************.*****************************.....99**********9999******* PP

                    EEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHH.TSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 194 iLdvGGGfgveyeeeeeplkleeiaekirealeeafp.gdkevtiiaEpGRalva 247
                    ++++GGG+++ y+ +ee+++++++   + +a +++++  +++v++ +EpGR+lva
     EHT99346.1 219 AISAGGGLSIPYHYGEEAIDTDHYFGLWDAARQRIAShLGHAVKLEIEPGRFLVA 273
                    *************************************86778***********98 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0     4e-29   2.4e-25       5      98 .]     189     374 ..      28     374 .. 0.70

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 4e-29
                      E....................................................................................GGEEEEEEE CS
                      x....................................................................................xxxxxxxxx RF
  Orn_DAP_Arg_deC   5 d....................................................................................eagvLvtrV 14 
                      +                                                                                    e+gvLv++V
       EHT99346.1 189 HigsgvdyahlqqvcdamvdlvvafgqdleaisaggglsipyhygeeaidtdhyfglwdaarqriashlghavkleiepgrflvaESGVLVSQV 282
                      05555555555555556666666666666666666666666666666666666666666777777777777777777777777779******** PP

                      EEEEEETCEEEEEES--TTTS-HHHHCTT-S-E.ESBTT-SCEEC.EEEEEEEE-SSSSTT-EEEEE.......EEEEE--TT-EEEESS-S CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  15 iavkesekkkfvivdaGmndllrpalygsfhei.pvkeeeaekeeeeeeevdvvGptCesgDvlakd.......relpelevGdllafedaG 98 
                       avke+++++fv vdaG++dl+rp++ygs+h+i  +  ++++ +e++++e+ v+Gp+CesgDv+++        r++p+++vGd+l+f+d+G
       EHT99346.1 283 RAVKEMGSRHFVLVDAGFSDLMRPSMYGSYHHIsLMAGDNRQIDEQDTRESVVAGPLCESGDVFTQLeggkvetRAIPDAKVGDYLVFHDTG 374
                      *******99************************6555577778888999****************9888888888***************98 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   3.9e-05      0.23     221     257 ..      40      76 ..      30      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.9e-05
        LuxC 221 aaeraAkDiivfdQqAClspqvvfvekddkieidefa 257
                  a+  A D+++f Q+AC+  +++ ++k+  +++d ++
  EHT99346.1  40 IAQLHAFDVVSFAQKACSNTHILRLMKSAGVKVDSVS 76 
                 4567799*******************99999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3014.10
//
Query:       EHT99347.1  [L=306]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-47  159.9   4.4    7.6e-47  159.4   4.4    1.3  1  LysR_substrate  LysR substrate binding domain
    8.4e-18   64.1   1.5    2.2e-17   62.7   1.5    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.044   13.7   0.4       0.11   12.5   0.4    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.052   13.4   0.2       0.14   11.9   0.2    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   4.4   1.7e-50   7.6e-47       4     207 ..      92     293 ..      89     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 1.7e-50
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g+L+i++ p+++++llpp+++ f++ryP+v+l++   ds+ l+++l + ++Dl+++    +++g + + L++   v+v++++hpLa++  +++
      EHT99347.1  92 RQGELSIACLPAFSQSLLPPICQTFLQRYPDVSLNIIPQDSPLLEEWLSAQRYDLGLTETLHAPAGTDRQALLTCDEVCVLPKQHPLAQRNLLTP 186
                     69********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     +d+a+e+ + l++  ++r+ll+++++e+g+++r ++e+ s+++++a+v+aG+Gi+++  +++  + ad ++v++p++  ++p++++lv++++r++
      EHT99347.1 187 QDFAGENYVSLSRTDSYRQLLDALFHEQGVTRRMVMETHSAASVCAMVQAGVGISVVNPLTA-LDYADSGIVMRPFSV-AVPFTVSLVRPRHRPA 279
                     *************************************************************9.6688889999*****.**************** PP

                     HHHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflrea 207
                     s++v af+++l+ +
      EHT99347.1 280 SALVDAFAAHLQHQ 293
                     **********9876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   1.5   4.9e-21   2.2e-17       1      59 [.       6      64 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 4.9e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +r++++f+av+ +g++t+AA  L +sqp+vsr ++rLE++l  +LfeR  ++l++T +G
  EHT99347.1  6 WRHIEIFHAVMTSGNLTQAATLLQTSQPTVSRELARLERQLSLQLFERVRGRLQPTVQG 64
                69**********************************************9999****998 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   2.4e-05      0.11      26      49 ..      23      46 ..      20      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                HHHHHTTSSHHHHHHHHHHHHHTT CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreg 49
                + A +l +++ tvsr+l++L+r+ 
  EHT99347.1 23 QAATLLQTSQPTVSRELARLERQL 46
                5699*****************985 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   3.2e-05      0.14      11      44 ..      17      50 ..      11      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldl 44
                ++gn++++A  L  +  T++  L r+e+ l l l
  EHT99347.1 17 TSGNLTQAATLLQTSQPTVSRELARLERQLSLQL 50
                689*************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2216.93
//
Query:       EHT99348.1  [L=387]
Description: putative sugar transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-41  139.9  50.4    9.2e-41  139.9  50.4    2.0  2  MFS_1     Major Facilitator Superfamily
      1e-06   27.9  19.3      1e-06   27.9  19.3    2.8  2  Sugar_tr  Sugar (and other) transporter
    3.7e-05   23.2  45.0    4.8e-05   22.8  45.0    1.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.052   12.8   1.7        0.1   11.8   0.1    2.1  2  Pho88     Phosphate transport (Pho88)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9  50.4   2.1e-44   9.2e-41       1     328 [.       8     316 ..       8     324 .. 0.84
   2 !    5.1   8.0     0.002       9.2     121     171 ..     323     375 ..     317     384 .. 0.69

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 2.1e-44
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l+af ++++ ++++ +lp  +a+dl+++  ++g+l+++yalg a+++++++ l+ ++ r+++l+l +++f++g ll+++a s+ ll+++rv+++l+ 
  EHT99348.1   8 LALSAFAIGTTEFVIMGLLP-EVANDLQVTIPSAGWLISGYALGVAIGAPVMALLTAKLPRKKTLILLMAIFIIGNLLCALAYSYNLLMLARVITALCH 105
                 6899****************.9*************************************9999************55555567777************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 ga+f +ga+++a +++ +++++a++l+ +g  l+ +lg +lg ++ +++gWra+f+ +a++++laf+     l ++ p +k+++p+ +        +++
  EHT99348.1 106 GAFFGIGAVVAASLVAADRQASAVALMFTGLTLANVLGVPLGTWFGQLFGWRATFWGVAVIGVLAFI----ALITSLPGNKNEKPVNL--------ASE 192
                 *****************************************************************77....45677777788777777........455 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglalla 295
                  ++al + + lw+ l++ ++f++++++l++++  +l +v g+s  g+  +++l++++  +g    +l+g+l+dr     +l l++++ll+a+++l++  
  EHT99348.1 193 -ISALANGK-LWLSLLMTVCFAAAMFTLFSYIAPLLLQVTGISdhGVSWTLFLIGAGLTAG---NILGGKLADR---NVALSLTGSFLLIALFSLLFSW 283
                 .66677666.88444444444446666666666668*********9888887777777777...9*********...6677777777777777776666 PP

       MFS_1 296 vtssavllllvlvliGfglgfvfpsllalasdl 328
                 +++  +l+ + l+l+ ++ + ++p l+  ++++
  EHT99348.1 284 TSHALWLAEITLFLWAMATFATVPGLQINVVRH 316
                 66556666669999***7777777777666655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.002
       MFS_1 121 raigllsagfslGailgpllgglla.sslgWravfyilaivsllafv.lflll 171
                 ++  l  ++f++G +lg+ +gg+++   +g ++v +++a++++++++ +++ +
  EHT99348.1 323 LVSTLNISAFNVGNALGAWVGGAVIaRGYGLTSVPVAAAALAAVGLIvCVITF 375
                 56678889**************9995666655555555555555544233343 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9  19.3   2.3e-10     1e-06      48     189 ..      40     175 ..       9     181 .. 0.84
   2 !    7.4   1.3   0.00038       1.7      41      97 ..     318     375 ..     297     382 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.3e-10
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                  g++ s + +G +iG+ ++ ll+ ++ Rkk+l+   ++f+ig++l+a+a    s+ +l+++Rv++ ++ G++ ++  + ++ +  ++     v l  ++
  EHT99348.1  40 AGWLISGYALGVAIGAPVMALLTAKLPRKKTLILLMAIFIIGNLLCALAY---SYNLLMLARVITALCHGAFFGIGAVVAASLVAADRQASAVALMFTG 135
                 6999**********************************************...**************99999888766666655555555555566666 PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 +t+  +++  +g+ + +  +   wr +++  +v+ +l +i+l+
  EHT99348.1 136 LTLANVLGVPLGTWFGQLFG---WRATFWGVAVIGVLAFIALI 175
                 66666666666666666667...************99999875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00038
                 HHH...HHHHHHHTHHHHHHHHHHHHHHHHHH.TTHHHHHHHHHHHHHHHHHHHH-TT CS
    Sugar_tr  41 keessvlsglivsiflvGaiiGslfagllgdr.fGRkkslliaavlfvigavlqaaak 97 
                 ke+ ++ s+l  s+f+vG ++G+ ++g ++ r +G  ++ ++aa+l+ +g ++++++ 
  EHT99348.1 318 KEAPNLVSTLNISAFNVGNALGAWVGGAVIARgYGLTSVPVAAAALAAVGLIVCVITF 375
                 44578999******************98776659****************99998765 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8  45.0   1.1e-08   4.8e-05       2     362 ..      12     371 ..      11     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.1e-08
       MFS_4   2 avalGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlv 100
                 a a+G   F+   +LP++ +++q+++  ag+l ++ +lG  +Ga + a   ++ + + +l   +    +  l +al+ s  +++l+R+++ +  ++ + 
  EHT99348.1  12 AFAIGTTEFVIMGLLPEVANDLQVTIPSAGWLISGYALGVAIGAPVMALLTAKLPRKKTLILLMAIFIIGNLLCALAYSYNLLMLARVITALCHGAFFG 110
                 5799****************************************7765555555555544444444556678899999********************* PP

       MFS_4 101 fgsslvlahaaaarrervgallfaGvGlGiavsgllv.llllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalll 198
                 +g+ ++ + +aa r+++  al+f G  l  +++  l  ++++ +g+ a    +++av+ +++++++++ lp ++++e   ++ ++  + ++  l+  ll
  EHT99348.1 111 IGAVVAASLVAADRQASAVALMFTGLTLANVLGVPLGtWFGQLFGWRAT--FWGVAVIGVLAFIALITSLP-GNKNEKPVNLASEISALANGKLWLSLL 206
                 *************************999877776554044444444444..66888999999999999999.444444444444445556666666667 PP

       MFS_4 199 aYglaGfGYiitatFlvaiardgaggalleallWll..vGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltfla 295
                 +  +++++      ++  +  +   g   +   W+l  +G +  +g  +  ++a+r+ +  ++   lli   ++l s  s+++ +  +   l  ++++a
  EHT99348.1 207 MTVCFAAAMFTLFSYIAPLLLQ-VTGISDHGVSWTLflIGAGLTAGNILGGKLADRNVALSLTGSFLLIALFSLLFSWTSHALWLAEITLFLWAMATFA 304
                 7788888888999999999888.7788888888875116888889999999999998888777788888888999999999986666666666655555 PP

       MFS_4 296 italvlqlarelappatrrllglmTa.sfgigQilGpllasllaeatgslalallvaaaalvlaaliv 362
                 ++  +lq+     +++ ++l++ + + +f +g +lG+ + +++ ++  +l+++ ++aaa+++++++++
  EHT99348.1 305 TV-PGLQINVVRHGKEAPNLVSTLNIsAFNVGNALGAWVGGAVIARGYGLTSVPVAAAALAAVGLIVC 371
                 55.4677766667888899999888736****************999999999999999999988876 PP

>> Pho88  Phosphate transport (Pho88)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.19   8.6e+02      14      49 ..      58      91 ..      45      98 .. 0.72
   2 ?   11.8   0.1   2.3e-05       0.1      94     123 ..     200     229 ..     196     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.19
       Pho88 14 lmqvskkidfedpevllyvRilYvvsqliillvyly 49
                +  ++ k++   +++l+ + +++++ +l+++l+y y
  EHT99348.1 58 MALLTAKLPR--KKTLILLMAIFIIGNLLCALAYSY 91
                4445555554..455666678999999999999887 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.3e-05
       Pho88  94 kllksilmgvammafmhlymkytnPLllQs 123
                 kl  s lm+v++ a m+  + y+ PLllQ 
  EHT99348.1 200 KLWLSLLMTVCFAAAMFTLFSYIAPLLLQV 229
                 667899***********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 2626.49
//
Query:       EHT99349.1  [L=208]
Description: hypothetical protein CKS_1364 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-05   23.4   0.3    0.00021   22.2   0.3    1.6  1  Trypsin_2  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   1.2e-08   0.00021      48     150 .]      71     168 ..      48     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.2e-08
   Trypsin_2  48 vvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeksg.svssGivsgvvesesaasgegesfl..qtdaatspGsSGGplfd. 142
                 v a++pe DlA++   ++++a+lpp+   +    + g++v + Gy   + ++  s+ ++ v+ +      +++++ + +   ++a +  G+SGG++ + 
  EHT99349.1  71 VKAWHPECDLAVVYH-KNSEANLPPAFRNS----HIGDKVNLYGYSFISAMPVsSTGQNLVNTTLA----NDWNKANCVvvAANAGVVKGMSGGAVYNa 160
                 44555566*******.88888888887444....6788*******544444435777777777777....666666666679****************9 PP

   Trypsin_2 143 sdGrvvGl 150
                 sd ++ G+
  EHT99349.1 161 SDDTLAGV 168
                 99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1607.54
//
Query:       EHT99350.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT99350.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99350.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99350.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99350.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99350.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99350.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT99350.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99350.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99350.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99350.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99350.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT99350.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99350.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT99350.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99350.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT99350.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT99350.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT99350.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99350.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT99350.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99350.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT99350.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99350.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99350.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99350.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99350.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99350.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99350.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99350.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT99350.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT99350.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT99350.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT99350.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT99350.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99350.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99350.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.71u 0.23s 00:00:00.94 Elapsed: 00:00:00.38
# Mc/sec: 4115.58
//
Query:       EHT99351.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99351.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 918.04
//
Query:       EHT99352.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99352.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99352.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99352.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99352.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 896.06
//
Query:       EHT99353.1  [L=506]
Description: class II lysyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-82  276.1   0.2    4.1e-82  275.8   0.2    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    2.3e-15   56.3   0.0    4.1e-15   55.5   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00018   21.1   1.2       0.24   10.8   0.1    2.7  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.8   0.2   6.8e-86   4.1e-82       1     313 [.     162     501 ..     162     502 .. 0.92

  Alignments for each domain:
  == domain 1  score: 275.8 bits;  conditional E-value: 6.8e-86
                  .CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqi 97 
                  ++e+r+++ryldl  +++ ++++++rs++++ +r+++  ++f+e+etP+++   +++ ar+F +++++ + +++ L+++p+lyl++l+v+g+drvf+i
   EHT99353.1 162 DQETRYRQRYLDLiANDESRNTFKIRSQIMAGIRQFMVARDFMEVETPMMQVIPGGASARPFITHHNALDIDMY-LRIAPELYLKRLVVGGFDRVFEI 258
                  589**********9*******************************************************88999.*********************** PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS..-SS--HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei..gkdldkader 193
                  +r+FR+E ++ ++++ EFt++e++m++++++d+++++e l+++l+++v  +s+  +    ++++ d+ kpf++lt++eai+k++ +    dld  d+ 
   EHT99353.1 259 NRNFRNEGISPRHNP-EFTMMELYMAYADYKDLIELTESLFRTLAQDV-LGST--VVPYGEQKF-DFGKPFEKLTMREAIKKYRPEtdLADLDDFDKA 351
                  ***************.********************************.5552..333333333.9****************9988554466666666 PP

                  HHHH..........................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHH.. CS
                  xxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  tRNA-synt_2 194 alvk..........................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgld.. 263
                  + v                            +  +p+f+t++Pae++p+++r++e+ +++t++++++i   E+++G ++++d + + +++ ++     
   EHT99353.1 352 VAVAqaigikvekswglgrvvteifeetaeAHLIQPTFITEYPAEVSPLARRNDEN-PEITDRFEFFIGRREIGNGFSELNDAQDQADRFLQQVNAkd 448
                  6666777888888888889999999998888889*******************999.9**********999*******************99987779 PP

                  ...SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 264 ...eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                     +ea+  +++y++ale G+pp++Glg+G+dR+vml+++s+ Irdvi+FP l
   EHT99353.1 449 agdDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAL 501
                  9999***********************************************76 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   6.9e-19   4.1e-15       1      76 []      68     146 ..      68     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 6.9e-19
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET.....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr.....eeatklaenlkeGdvvrvtGrvkrrpggelelkveeiell 76 
                      V+vaGr +++  r +gk++fi+l+D  griq+++ r     + + +++++++ Gd+++++G+++++++gel+++++e++ll
       EHT99353.1  68 VSVAGRMMTR--RIMGKASFITLQDVGGRIQLYVARddlpeGIYNEQFKKWDLGDILGARGKLFKTKTGELSVHCSELRLL 146
                      89********..*****************************9***********************************9876 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         1   6.1e+03      17      42 ..     185     210 ..     177     212 .. 0.79
   2 !   10.8   0.1     4e-05      0.24     103     168 ..     254     320 ..     252     380 .. 0.79
   3 !    8.5   0.0   0.00022       1.3     212     234 ..     473     495 ..     464     498 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1
                   SHHHHHHHHHHHHHHCTTCEESSTTS CS
  tRNA-synt_2d  17 hpltkvleeikeiflelgfeevegpe 42 
                   ++ ++++  i++++++  f eve p 
    EHT99353.1 185 KIRSQIMAGIRQFMVARDFMEVETPM 210
                   55678889999999999999998875 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4e-05
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHH....CTSTEEEEEEECEETT CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkkl....fgaevkvrfrpsyfpf 168
                   +++ i+r fR++ +  +h +eF+ +e  ++  ++  +dl+ + e+l++ l     g +  v + +++f f
    EHT99353.1 254 RVFEINRNFRNEGISPRHNPEFTMMELYMAYADY--KDLIELTESLFRTLaqdvLGST-VVPYGEQKFDF 320
                   799***********************99876554..5666555555555500004444.45555555555 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00022
                   EEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRel 234
                   +++G+G++R+ ml ++ + iR++
    EHT99353.1 473 AGLGIGIDRMVMLFTNSHTIRDV 495
                   679******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3499.28
//
Query:       EHT99354.1  [L=364]
Description: peptide chain release factor RF-2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-59  199.6   4.1    4.5e-59  199.6   0.5    2.0  2  PCRF          PCRF domain
    3.4e-40  136.6   1.3    6.6e-40  135.7   1.3    1.5  1  RF-1          RF-1 domain
  ------ inclusion threshold ------
      0.081   13.0   0.5        6.3    6.8   0.1    2.4  2  TcpS          Toxin-coregulated pilus protein S
       0.41   11.4   5.0       0.85   10.4   0.5    2.5  2  DUF2203       Uncharacterized conserved protein (DUF2203)
          6    7.4   8.6        1.6    9.2   0.9    3.2  2  DUF4140       N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.5   1.2e-62   4.5e-59       2     192 ..      30     218 ..      29     219 .. 0.97
   2 ?    1.5   0.2     0.064   2.3e+02      59      81 ..     281     308 ..     250     337 .. 0.58

  Alignments for each domain:
  == domain 1  score: 199.6 bits;  conditional E-value: 1.2e-62
                 HHHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTT CS
        PCRF   2 eeeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakell.e.edeelaelaeeeleelekeleeleeelkklLlpkdende 98 
                 +e+lee++++l++++vw+++e+a++l ke ++le+iv++l+++++ led++ + +l+ e +dee  ++a eel++l+ +l el  e++++++  +e+d+
  EHT99354.1  30 KERLEEVNAELEQSDVWNEPERAQALGKERSSLEAIVNTLDQMTQGLEDVQGLLDLAvEaDDEETFNEAVEELDALDVKLGEL--EFRRMFS--GEYDS 124
                 799*************************************************9998864788999999***************..*******..***** PP

                 SEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEE CS
        PCRF  99 knaileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStat 192
                  +++++++aG+GG+ea+++a++L+rmY r+ae kg+k+e++++se e+ Gik+vt++++g++a+g+L++E+GvHR++R ++++s gr+hTS+ +
  EHT99354.1 125 ADCYIDLQAGSGGTEAQDWASMLMRMYLRWAEAKGFKTEIIEESEGEVAGIKSVTIRVSGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSS 218
                 *********************************************9999******************************************976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.064
                 .....-S-..-GG....GTHHHHHHHHH CS
        PCRF  59 e.edeelaelaee....eleelekelee 81 
                 + +d+ +++++ +    e+++ ++e ++
  EHT99354.1 281 KnKDQAMKQMKAKlyelEMQKKNAEKQA 308
                 1134444444322221233333333333 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   1.3   1.8e-43   6.6e-40       1     116 []     227     336 ..     227     336 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 1.8e-43
                 SCCCCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S-- CS
        RF-1   1 deieieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgsse 99 
                 d+i+i+i+++dl+id++r+sGaGGQ+VN+tesaVr+th+ptg  v +cq++Rsq+kN+++A++++kakl  +ele +k++++k+ ++++k++ig+gs  
  EHT99354.1 227 DDIDIDINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTG-TVTQCQNDRSQHKNKDQAMKQMKAKL--YELEMQKKNAEKQALEDNKSDIGWGS-- 320
                 5899**************************************.5*************************..666777777788888888999*****.. PP

                 ECEEEECGCTTEEEETT CS
        RF-1 100 kiRtynkkpqsrvkdhr 116
                 +iR+y++ ++sr+kd+r
  EHT99354.1 321 QIRSYVL-DDSRIKDLR 336
                 *******.99*****98 PP

>> TcpS  Toxin-coregulated pilus protein S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.016        58      16      48 ..      84     116 ..      81     120 .. 0.89
   2 ?    6.8   0.1    0.0018       6.3      21      53 ..     274     306 ..     262     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.016
        TcpS  16 sfnvladelevyennyksiesLknkleqLeLkk 48 
                 ++ v ad+ e++++ +++++ L  kl  Le+++
  EHT99354.1  84 DLAVEADDEETFNEAVEELDALDVKLGELEFRR 116
                 56789*************************876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0018
        TcpS  21 adelevyennyksiesLknkleqLeLkkkilev 53 
                  ++ + ++n+ ++++++k kl  Le++kk  e 
  EHT99354.1 274 QNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEK 306
                 567788999999*****************8774 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00024      0.85      32      95 ..      29      94 ..      23      96 .. 0.80
   2 ?    2.4   0.3     0.067   2.4e+02      21      55 ..     272     306 ..     253     325 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
     DUF2203 32 leeeleeakaeaekse...aaeleaeleeleaeieelveeieelGvevkdleaglvDFpakldgeev 95
                ++e+lee +ae e+s+   + e++++l + ++++e++v++++++   + d+ +gl+D   + d+ee 
  EHT99354.1 29 KKERLEEVNAELEQSDvwnEPERAQALGKERSSLEAIVNTLDQMTQGLEDV-QGLLDLAVEADDEET 94
                345555555555555555588999999************************.6*******9999986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.067
     DUF2203  21 elralrkeleeleeeleeakaeaekseaaeleael 55 
                 ++++ r++ +++ +++++ ka+  + e ++++ae 
  EHT99354.1 272 QCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEK 306
                 44444444444444444444444433333333333 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.4      0.25   9.1e+02      70      70 ..      55      55 ..       4     117 .. 0.60
   2 ?    9.2   0.9   0.00045       1.6      45      94 ..     258     307 ..     252     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.25
     DUF4140 70 l 70
                l
  EHT99354.1 55 L 55
                2 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00045
     DUF4140  45 gaatildvqvervpnreaeeeelkalraeleeledelaaledelaaaear 94 
                  a++i+++ + +v++ ++++++ k  ++++++ +++l +le ++++ae++
  EHT99354.1 258 SAVRITHIPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQ 307
                 34777777777777777777766666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1585  (0.0884043); expected 358.6 (0.02)
Passed bias filter:                      753  (0.041999); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2594.67
//
Query:       EHT99355.1  [L=579]
Description: ssDNA exonuclease, 5' --_ 3'-specific [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-28   97.5   0.0    1.4e-27   96.8   0.0    1.4  1  DHHA1     DHHA1 domain
    2.9e-19   69.3   0.0    4.6e-19   68.6   0.0    1.3  1  RecJ_OB   RecJ OB domain
    9.3e-09   35.4   0.0    1.5e-08   34.8   0.0    1.3  1  DHH       DHH family


Domain annotation for each model (and alignments):
>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   2.4e-31   1.4e-27       1     138 []     323     454 ..     323     454 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 2.4e-31
                 HHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEECTEEEEEEEESSHSS-HHHH CS
       DHHA1   1 leslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegdkvkvsarskkdgvdagel 99 
                 l++ln+ rke+e+ +   +eala ++  e +++     + ++ +a++++ew++g++gi+a++lk+++++pvi+f+ + +g   k+s+rs++ g++++++
  EHT99355.1 323 LDALNQMRKEIEQGM--QSEALALCQTLEREQT-----DLPLGLAFYHPEWHQGVVGILASRLKERFHRPVIAFAPAGDG-MLKGSGRSIA-GLHLRDA 412
                 789************..*********9888877.....******************************************.**********.******* PP

                 HHH...HHHHTTCCEEEETCEEEEEEEHCHHHHHHHHHHHHH CS
       DHHA1 100 ake...aaaklgggGGGHdlAaGagipaekleealealeeai 138
                 +++   +++ l+ ++GGH++AaG+++++ ++ee+++++ e++
  EHT99355.1 413 LERldtLHPGLMQKFGGHAMAAGLSLEEARYEEFRQRFAELV 454
                 *************************************99875 PP

>> RecJ_OB  RecJ OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   7.7e-23   4.6e-19       2     107 ..     470     573 ..     469     574 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 7.7e-23
     RecJ_OB   2 DaeldlseiteelleelerlePfGkgnpePvfllknvkvesarivgkeknhlklkledes.gksleaiaFnlaekleelekgdkvdiaytleinefngr 99 
                 D+ l++ e ++e++e+l+  +P+G+ +peP f  k+ ++ ++r+vg+  +hlk+ +e  + g  +++iaFn   +l   ++  +v++ay+l+ine++g+
  EHT99355.1 470 DGALQPAEFSLETAEMLRDAGPWGQAFPEPAFDGKF-RLLQQRLVGE--RHLKVMVEPLGgGPLIDGIAFNVDTTLWPDSSVREVELAYRLDINEYRGN 565
                 899*********************************.**********..*******76655999********9999989999***************** PP

     RecJ_OB 100 etlqlrik 107
                 +++ql+i+
  EHT99355.1 566 RSVQLIIE 573
                 ******98 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.5e-12   1.5e-08       4      85 ..      76     206 ..      75     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.5e-12
                 EE-ECSSSHHHHHH.HHHHHH.......................................CECS--TCGGCGCCHHCCCSEEEEEEE-S---S...... CS
                 xxxxxxxxxxxxxx.xxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
         DHH   4 ivghknpDtDsigS.aialan.......................................llvDhneksqavegeakeeaedviiiDHHrlge...... 56 
                 i+ ++++D+D+++S a+ + +                                       l+vD++++s+a ++ a +++  v+++DHH +ge      
  EHT99355.1  76 IMVVGDFDADGATStALTVLAlrsmgcsnvqylvpnrfedgyglspevveqakargaemlLTVDNGISSHAGVAVAHAHGIAVLMTDHHLPGEtlpdad 174
                 6779**********99999997777777777777777777777777777777777777766********************************999999 PP

                 ..S---SS--EEEE-SSS-HHHHHHHHHHH..T CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
         DHH  57 ..efetlapilflnepvgstaeivaellee..k 85 
                    + +l +++f  + + ++++++++l+ +   
  EHT99355.1 175 aiVNPNLPDCTF-PSRALAGVGVAFYLMMAlrA 206
                 984444444444.47788999999999887441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4387.69
//
Query:       EHT99356.1  [L=237]
Description: protein disulfide isomerase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-26   91.1   0.0    8.1e-26   90.6   0.0    1.2  1  Thioredoxin_2  Thioredoxin-like domain
    3.6e-14   52.0   0.0    6.9e-14   51.0   0.0    1.5  1  DsbC_N         Disulfide bond isomerase protein N-terminus
    4.4e-07   29.9   0.0      0.026   14.3   0.0    2.4  2  DSBA           DSBA-like thioredoxin domain
    0.00013   22.1   0.4      0.047   13.9   0.3    2.2  2  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.8e-29   8.1e-26       3     109 .]     105     230 ..     103     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.8e-29
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkel..ddvtvrvllfp...lkpsfepkavaiwcakekkkafkd..................ieenvelark 75 
                    +++++v++vftd +C+yC+kl++++ ++   ++tvr+l+fp   ++ ++  ++ a+wc+++++kaf+d                  i ++++l+  
     EHT99356.1 105 AKEQHVVTVFTDITCGYCHKLHEQMADYnaLGITVRYLAFPregMNGNVASAMKAVWCSADRNKAFDDamkgdapkmeapascktdIGQQYKLGIL 200
                    6899************************9999**************************************************************** PP

  Thioredoxin_2  76 ygvrgtPtivfldgkeivarlpGyvpaeeleall 109
                    +g++gtP+i++  g     ++pGy +++el+++l
     EHT99356.1 201 FGIQGTPAILTDSGM----MIPGYQSPQELKQVL 230
                    ***************....************997 PP

>> DsbC_N  Disulfide bond isomerase protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.5e-17   6.9e-14       4      52 ..      30      76 ..      27      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.5e-17
                HHTTT..--S----B-SSTTEE--EETTEE-EEESSSS-EE-S-----T CS
      DsbC_N  4 LekllpnlkvesvspspipGLyEVviggqvlYtdadgkyliqGnlydlk 52
                L+kl+  l  ++++psp+pG+++V ++++vlY+++dgk++iqG+lyd+ 
  EHT99356.1 30 LKKLG--LHQTEIQPSPLPGFKTVLSESGVLYVTDDGKHMIQGPLYDVS 76
                77777..8999************************************96 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.1e-05     0.048       2      53 ..     111     157 ..     110     182 .. 0.80
   2 !   14.3   0.0   5.9e-06     0.026     149     192 ..     187     230 ..     174     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSSCHHHHCT.S.GGG CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfelagakkasgnvgpse 53 
                 v +f D+ C+yC+   e++  + a    ++v++ +f+ +g     gnv+ ++
  EHT99356.1 111 VTVFTDITCGYCHKLHEQMADYNALG--ITVRYLAFPREGM---NGNVASAM 157
                 89******************999776..9999999987777...67776666 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.9e-06
                 HHHHHHHHHHHHHHTT-SSSSEEEETTCEEEESSSSHHHHHHHH CS
        DSBA 149 vkeavrentaaaqslgvtGvPtvvvdgkrmvfGadrldtladal 192
                  k ++ ++ ++++  g++G+P+++ d   m++G ++++ l++ l
  EHT99356.1 187 CKTDIGQQYKLGILFGIQGTPAILTDSGMMIPGYQSPQELKQVL 230
                 57788999*****************9999***********9877 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3     1e-05     0.047      12      41 ..     106     135 ..      97     176 .. 0.67
   2 !    6.5   0.0    0.0019       8.7     136     165 ..     201     231 ..     163     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                    T-SEEEEEEE-TT-HHHHHHHHHHHHHHHH CS
  Thioredoxin_4  12 dApvtvieyedlrCphCakfeeevekllee 41 
                    + +++v++++d +C +C k++e++    + 
     EHT99356.1 106 KEQHVVTVFTDITCGYCHKLHEQMADYNAL 135
                    55799*****************99765554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0019
                    HT--SS-EEEETTEE.E-TT--HHHHHHHHT CS
  Thioredoxin_4 136 agiestPtfiingek.veepqtyeelkalid 165
                     gi++tP ++ +  + + ++q+++elk+++d
     EHT99356.1 201 FGIQGTPAILTDSGMmIPGYQSPQELKQVLD 231
                    69*********865549***********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1841.06
//
Query:       EHT99357.1  [L=297]
Description: site-specific tyrosine recombinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-55  188.2   0.1    1.4e-55  187.7   0.1    1.2  1  Phage_integrase  Phage integrase family
    2.1e-24   85.6   2.2    2.1e-24   85.6   2.2    2.3  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
      4e-06   27.2   2.7    5.3e-06   26.8   0.3    2.2  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.7   0.1   2.4e-59   1.4e-55       3     171 ..     112     283 ..     110     284 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.7 bits;  conditional E-value: 2.4e-59
                      HHHHHHHHHHHCCGC..HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH...CHCC CS
  Phage_integrase   3 ltedeverllaalee..slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska...leea 91 
                      l e +verll+a +   +l++rdk++lelly+tGlR+sEl++L+++d++l++gv++v    gKg+ker vpl+eea+ +l+ ++++    l + 
       EHT99357.1 112 LSEAQVERLLQAPDVnvPLELRDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRV---IGKGNKERLVPLGEEAVYWLEYYMEHGrpwLLNG 202
                      8899**********9******************************************...******************************9*** PP

                      TTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S.SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase  92 eksellfaskrgkplsrqtvrkafkraveeagie.kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                      +  ++ f+s r+++++rqt+++++k+++  agi+ ++l+pH lRh+fat+Ll++g+dlrvvq+llGHs++sttqiYthva 
       EHT99357.1 203 QTLDVFFPSSRAQQMTRQTFWHRIKHYATLAGIDsEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 283
                      ******************************************************************************985 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   2.2   3.5e-28   2.1e-24       2      84 .]       8      89 ..       7      89 .. 0.99
   2 ?    0.2   0.1      0.16   9.6e+02      27      60 ..     227     257 ..     212     285 .. 0.66

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 3.5e-28
                     HHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1  2 eqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvreg 84
                     eqfl+ L++er+l++nTl++Yr+dL+ +  +la+ ++ +l +l+++d+++flae++e g++ats ar lsa+r++fq+l+re+
       EHT99357.1  8 EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAH-HGLTLVSLSPQDLQQFLAERLEGGYKATSSARLLSAMRRLFQYLYREK 89
                     79********************************.**********************************************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
                      HHHHHHHHH.TS--TTT--HHHHH.HHHHS----- CS
  Phage_int_SAM_1  27 rrflkflaergkesleqlttedvr.aflaeleeeg 60 
                      +++ + +      + e+l+++ +r af  +l++ g
       EHT99357.1 227 KHYATLAGI----DSEKLSPHVLRhAFATHLLNHG 257
                      444444443....7777777777657777776654 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3   8.8e-10   5.3e-06       1      83 [.       6      90 ..       6      92 .. 0.90
   2 ?   -0.2   0.1      0.23   1.4e+03      16      32 ..     216     232 ..     210     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 8.8e-10
  Phage_int_SAM_4  1 Llerfrealrl.aglserTiksYlsaikrflrflkkk..apeeltkedieaYlnyLanerklsastqknalnalsffykkvlerel 83
                     L e+f++al   ++l+++T  sY + ++ +  +l +   +  +l+++d++++l+  + e  ++a++  + l+a++ +++ + ++++
       EHT99357.1  6 LTEQFLDALWIeRNLAQNTLSSYRQDLQTLTGWLAHHglTLVSLSPQDLQQFLAERL-EGGYKATSSARLLSAMRRLFQYLYREKI 90
                     689999999665*********************9634559*****************.********************99877765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.23
  Phage_int_SAM_4  16 erTiksYlsaikrflrf 32 
                      + T+++ ++ ik+++  
       EHT99357.1 216 QMTRQTFWHRIKHYATL 232
                      56999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2291.52
//
Query:       EHT99358.1  [L=172]
Description: flavodoxin 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-24   84.6   0.0    8.6e-24   84.4   0.0    1.0  1  Flavodoxin_1  Flavodoxin
     0.0033   17.1   0.0     0.0048   16.6   0.0    1.4  1  Flavodoxin_3  Flavodoxin domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.0   9.6e-28   8.6e-24       1     143 []       5     160 ..       5     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 9.6e-28
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   ++YgS t+ te +A+++++ +g+ ++ +++++++d d  +  +ee++ll+++++T+  G+++       +d+++++ ++l   +l ++ +a++g Gd
    EHT99358.1   5 LFYGSSTCYTEIVAEKIRDFIGD-EL-VTLHNVKDDD--PRLMEEYDLLILGIPTWDFGELQ-------EDWEAIW-PQLPTLNLHNKIVALYGMGD 89 
                   69********************5.44.5777777777..78*********************.......89*****.9999**************** PP

                   TTSSS..TTHHHHHHHHHHHHTTCEEES......................SSEEEETTST.HGHHHHHHHH CS
  Flavodoxin_1  98 sayen..FcaagkkldekleelGaerll......................kllegdednq.egqeeafrkW 143
                   + +++  F +a ++l+++l+ +G+++++                      ++l++d+ nq + ++e++++W
    EHT99358.1  90 QIGYGewFLDALGMLHDLLQPMGVQFVGywpldgyeftspkplsadgkqfVGLALDDVNQfDVTDERVEQW 160
                   **************************************************99******************* PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-07    0.0048       2      63 ..       5      69 ..       4     119 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.3e-07
  Flavodoxin_3  2 ilysSltGNTkkvAeaikealee.ekeivsikeakek.veeadvvfvGfwv.dkgtadeealkfl 63
                  ++y S+t  T+ vAe+i++ + +   +++++k+ +   +ee+d++++G+ + d g+ +e+ + + 
    EHT99358.1  5 LFYGSSTCYTEIVAEKIRDFIGDeLVTLHNVKDDDPRlMEEYDLLILGIPTwDFGELQEDWEAIW 69
                  589******************99556777777777669**********86536677777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1337.87
//
Query:       EHT99359.1  [L=125]
Description: hypothetical protein CKS_1376 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-16   60.3   6.4      2e-16   60.1   6.4    1.0  1  Cpta_toxin  Membrane-bound toxin component of toxin-antitoxin
  ------ inclusion threshold ------
       0.32   10.9   2.4        0.6   10.0   0.1    2.2  2  DUF2631     Protein of unknown function (DUF2631)


Domain annotation for each model (and alignments):
>> Cpta_toxin  Membrane-bound toxin component of toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   6.4   2.2e-20     2e-16      19     127 ..       8     115 ..       1     118 [. 0.88

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.2e-20
  Cpta_toxin  19 llvygllalliLlapwPedyallwllllllvvfecvrsqrkikkrqGelvlladnrlrWkkeeWqivkkpwllrlGvllvlrsakgkkrkrlWlaaDsm 117
                  l+ +++ + + l+p  +  +++  +l  l+v e +r  r++  r+G+l+ ++  +++W+ e+Wq ++  ++l   vllv+++++g + +r+Wl +D+m
  EHT99359.1   8 ALTLVVMLAGVGLMPLSAAEWVIKPVLFALIVWEGWRQDRRLCLRCGALRRDSARDWHWQDEHWQTQQPLYWLPGAVLLVMKNRQG-RITRFWLMQDNM 105
                 34444555556778888888899999*********************************************************999.899********* PP

  Cpta_toxin 118 seeewrqlrq 127
                 + +ewr+lr+
  EHT99359.1 106 QPAEWRALRA 115
                 ********97 PP

>> DUF2631  Protein of unknown function (DUF2631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.08   7.1e+02      39      50 ..       6      17 ..       3      19 .. 0.85
   2 ?   10.0   0.1   6.7e-05       0.6      22      62 ..      63     101 ..      59     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.08
     DUF2631 39 isvlallamliG 50
                i +l l++ml G
  EHT99359.1  6 ILALTLVVMLAG 17
                78999****988 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 6.7e-05
     DUF2631  22 aWGWsgespkttriaGlisvlallamliGnhqGhvedifLi 62 
                 +W W +e+ +t +   ++   +ll+m   n qG++   +L+
  EHT99359.1  63 DWHWQDEHWQTQQPLYWLPGAVLLVM--KNRQGRITRFWLM 101
                 79**********************99..5**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 920.14
//
Query:       EHT99360.1  [L=88]
Description: uncharacterized DUF339 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-24   84.0   0.1    5.9e-24   83.8   0.1    1.1  1  Sdh5      Flavinator of succinate dehydrogenase
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.037   13.7   0.0    1.1  1  RE_XamI   XamI restriction endonuclease


Domain annotation for each model (and alignments):
>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.1   6.6e-28   5.9e-24       2      73 .]       7      76 ..       6      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 6.6e-28
                HHHHHHH.--SSHHHHHTTTTHHHHHTTT--HHHHHHHHHHHTS--HHHHHHHHT-.---S-HHHHHHHHHH CS
        Sdh5  2 aRllyrsrrRGmlElDllLgrFaekhlatlseeeldaferLLdleDpdLldwltgrkeepedaelaallekl 73
                +R+ +++ rRGmlElD+ +++F++ +++tl++++++ f +LL+ +DpdL++w++++  ep+d+el+++++++
  EHT99360.1  7 SRVQWAC-RRGMLELDVAIMPFFKYEYDTLNDTDKQVFIALLKSDDPDLFNWMMNH-GEPADPELKRMVKLI 76
                79*****.************************************************.************987 PP

>> RE_XamI  XamI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.1e-06     0.037      59     102 ..      31      74 ..      18      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-06
     RE_XamI  59 eaakldeelrkvaeiilrlaDrdiFtWleeerepteaeieraav 102
                 e ++l++  ++v+  +l+  D+d F W+ ++ ep + e +r   
  EHT99360.1  31 EYDTLNDTDKQVFIALLKSDDPDLFNWMMNHGEPADPELKRMVK 74 
                 667888899999*9************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 707.45
//
Query:       EHT99361.1  [L=328]
Description: putative folate-dependent regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   28.2   0.0    4.3e-06   26.3   0.0    1.7  2  GCV_T     Aminomethyltransferase folate-binding domain
  ------ inclusion threshold ------
      0.078   13.0   0.3       0.52   10.4   0.0    2.1  2  DUF4128   Bacteriophage related domain of unknown function


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.8e-10   4.3e-06      52     159 ..      31     134 ..      25     150 .. 0.89
   2 ?   -0.7   0.0     0.082   7.4e+02      98     135 ..     155     185 ..     143     257 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.8e-10
       GCV_T  52 evsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarldedefllvvnaankekdlawlekaaekkdldvevedvteelallalqGPka 150
                  v Gpd++++Lq  lt d+++l++ +   ++ ++ +G + + l +++ +e  +  +v+ a +++ l  l+k+a    ++v++   ++++ ll ++G +a
  EHT99361.1  31 SVVGPDSTSYLQGQLTLDVAALDAAHHLPAAHCDAKGKMWSNLRLFHRGE-GYAYLVRRALRDTQLPELKKYAV--FSKVTLAA-DDDVVLLGVAGFQA 125
                 689**********************************************6.666666777888888999**999..99999999.889*********** PP

       GCV_T 151 revlskllg 159
                 r  l++ ++
  EHT99361.1 126 RAALADRFE 134
                 ****99884 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.082
       GCV_T  98 rldedefllvvnaankekdlawlekaaekkdldveved 135
                  + +++fllv++ a++e + + l + a+       ++d
  EHT99361.1 155 AQPAERFLLVTSLAEAEALKQKLAEDAQ-------LTD 185
                 4555778888887777766655555333.......333 PP

>> DUF4128  Bacteriophage related domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.088   7.9e+02       3      55 ..     126     181 ..     124     215 .. 0.69
   2 ?   10.4   0.0   5.8e-05      0.52      38      75 ..     254     291 ..     243     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.088
     DUF4128   3 raalkarlealakapalpvawpnvk....ftpptgepYLrvsvvpadtepltlggdd 55 
                 raal+ r+e l  ++  pv++++++    f +p ++  L  s+ +a++ + +l++d+
  EHT99361.1 126 RAALADRFEVLP-DSITPVVQQGETtllwFAQPAERFLLVTSLAEAEALKQKLAEDA 181
                 688888888887.57888888888756667888888666667777777777777433 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 5.8e-05
     DUF4128  38 rvsvvpadtepltlggdddrrrtGlfqvtvvtplgqgv 75 
                 +vs++pa++++l+l+ +++ rrtG++ + v ++ g  +
  EHT99361.1 254 QVSHLPAANDSLELQMGERWRRTGTVLAAVQLDDGVTW 291
                 69***************************998888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2547.86
//
Query:       EHT99362.1  [L=217]
Description: putative inner membrane oxidoreductase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-38  130.3  19.7      1e-37  130.1  19.7    1.0  1  HlyIII    Haemolysin-III related


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1  19.7   5.6e-42     1e-37       4     224 .]      14     209 ..      11     209 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 5.6e-42
      HlyIII   4 hnEtlniwtHllgailfivlailllslaevkensklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilyalak 102
                  +E+ n+++H+lg+ + iv ++lll++a++   + +  v+  +++ ++++++l+S+lyH +s     +++++++k+D+++I+lliag+y+p++++ l++
  EHT99362.1  14 AEEIANSISHGLGCFFGIVGLVLLLVKATAIHADVTTIVSSSLYGGSMIVLFLASTLYHAVSH---PRAKRVLKKVDHCAIYLLIAGTYTPFLMTGLQS 109
                 689**************99999999999888778899***********************444...599****************************66 PP

      HlyIII 103 apkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaaelalvllvlggvlylvGavfYalrvPErlkpgk 201
                    +  +++++i+ l++lgi++kl+ +   +++++l+ v ++++g+l+++ + +l++ l+  g      ++ll+lgg++y +G++fY++r        +
  EHT99362.1 110 --PLAHALMAVIWGLALLGILFKLTIA---ERYKVLSLVTYLCMGWLSLVVVYQLAMKLSPGG------IWLLALGGIIYSLGVIFYVAR------RVP 191
                 ..7999*********************...*************************99999999......*********************......999 PP

      HlyIII 202 fdivghsHqiFHvfvvlgalfhy 224
                 f     +H+i+H fv+ g ++h+
  EHT99362.1 192 F-----NHAIWHGFVLGGCICHF 209
                 9.....****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1653.03
//
Query:       EHT99363.1  [L=239]
Description: phosphosugar-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-15   55.7   0.0    6.8e-15   55.1   0.0    1.4  1  SIS       SIS domain
    5.8e-15   55.0   0.0    1.4e-14   53.8   0.0    1.6  1  HTH_6     Helix-turn-helix domain, rpiR family
    0.00056   19.7   0.0     0.0034   17.1   0.0    2.1  2  HTH_IclR  IclR helix-turn-helix domain
     0.0034   16.9   0.0     0.0074   15.8   0.0    1.7  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.009   15.8   0.0      0.056   13.2   0.0    2.4  2  LacI      Bacterial regulatory proteins, lacI family
  ------ inclusion threshold ------
      0.011   15.8   0.2        2.7    8.0   0.0    2.3  2  SIS_2     SIS domain
      0.013   15.4   0.1      0.041   13.8   0.1    1.9  1  HTH_11    HTH domain
      0.019   14.4   0.0      0.034   13.6   0.0    1.3  1  RepL      Firmicute plasmid replication protein (RepL)
      0.038   13.9   0.0      0.076   12.9   0.0    1.4  1  TrmB      Sugar-specific transcriptional regulator TrmB
       0.12   12.4   0.0       0.25   11.3   0.0    1.5  1  MarR      MarR family
       0.14   12.3   0.0       0.27   11.5   0.0    1.5  1  HTH_17    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   4.2e-18   6.8e-15       1     107 [.     107     210 ..     107     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 4.2e-18
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 ++++a+r++++G Gts++++k++a+ +  +g++ ++++d +     v + + e+ l i++s sget ++++ a + + ++ kiia+T+s++ +la+++d
  EHT99363.1 107 MIRQAERVFFIGVGTSGSLGKYGARFFSNVGKFSHAIDDPYY---PVNPSLYENALAIILSVSGETEEVLRIASQFSLNKCKIIAVTNSENCSLAKMSD 202
                 699*******************************99999998...66799************************************************9 PP

                 EEEEEEEE CS
         SIS 100 lalyinae 107
                  ++  +++
  EHT99363.1 203 FTVSYHVP 210
                 88876665 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   8.5e-18   1.4e-14      12      71 ..       8      67 ..       4      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 8.5e-18
                ----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHH CS
       HTH_6 12 ekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLa 71
                  l++ e ++  yi ++ +++++++i++lA++aavS  t++rf++k+  +G+se++++L 
  EHT99363.1  8 ATLNDLELQVYQYIIRHRENVSYMTIRELAEQAAVSTTTVLRFCRKMHCEGWSEFRIRLR 67
                56899999************************************************9985 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.1e-06    0.0034      10      47 ..      19      59 ..      15      61 .. 0.85
   2 ?   -0.6   0.0      0.73   1.2e+03       3      32 ..     156     183 ..     156     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.1e-06
                CT-CTTBSS...-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR 10 dalaeapqe...ltlselArrtglpkStvhRlLqtLvelGy 47
                +++ ++++    +t++elA++++++ +tv R+++ ++ +G+
  EHT99363.1 19 QYIIRHRENvsyMTIRELAEQAAVSTTTVLRFCRKMHCEGW 59
                5666777777779*********************9988886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.73
                 HHHHHHHCT-CTTBSS-BHHHHHHHHTS-H CS
    HTH_IclR   3 dRalaiLdalaeapqeltlselArrtglpk 32 
                 ++alai+  ++ +++e  +  +A ++ l+k
  EHT99363.1 156 ENALAIILSVSGETEE--VLRIASQFSLNK 183
                 5799999999999999..888888888876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.6e-06    0.0074       2      41 ..      11      54 ..      10      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.6e-06
      HTH_24  2 detdrkILelLqk...npr.isqreLAerlglSpstvnrrlkrL 41
                +++++++++++ +   n + +++reLAe+  +S +tv+r  +++
  EHT99363.1 11 NDLELQVYQYIIRhreNVSyMTIRELAEQAAVSTTTVLRFCRKM 54
                556666666666666655559********************998 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.5e-05     0.056       1      19 [.      32      50 ..      32      55 .. 0.90
   2 ?   -1.7   0.0       1.7   2.7e+03       8      18 ..     197     207 ..     196     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.5e-05
                -HHHHHHHCTS-HHHHHHH CS
        LacI  1 tikDVArlAGVSkaTVSrv 19
                ti+++A++A VS++TV r+
  EHT99363.1 32 TIRELAEQAAVSTTTVLRF 50
                8***************776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
                 HCTS-HHHHHH CS
        LacI   8 lAGVSkaTVSr 18 
                 lA+ S  TVS+
  EHT99363.1 197 LAKMSDFTVSY 207
                 7888999**97 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0089        15       9      47 ..      85     123 ..      82     145 .. 0.84
   2 ?    8.0   0.0    0.0016       2.7     106     137 ..     159     190 ..     149     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0089
                 HHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGH CS
       SIS_2   9 ilerivetqaeaiekaaeliadslenggkvlvfGsGhSa 47 
                 +l+ +++ ++++ e++++  a+ +++ ++v+  G G S 
  EHT99363.1  85 MLSFFKSINNAEFEQVITQAAAMIRQAERVFFIGVGTSG 123
                 5666666789999***********************996 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
                 EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2 106 vLlviSnsGnnavvveaaeaakergmkviAlt 137
                 + +++S sG+ + v+ +a ++    +k+iA+t
  EHT99363.1 159 LAIILSVSGETEEVLRIASQFSLNKCKIIAVT 190
                 679****************************9 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.5e-05     0.041       7      34 ..      19      49 ..      13      65 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
      HTH_11  7 elLleargp...isgeeLAeeLnvSrrtvrr 34
                + ++++r++   +++ eLAe+  vS++tv r
  EHT99363.1 19 QYIIRHRENvsyMTIRELAEQAAVSTTTVLR 49
                555555544111689**************87 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.034      58      94 ..      15      49 ..       4      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
        RepL 58 trlvyylidnlnsnntliatnRelaeetgislktvse 94
                +++ +y+i   +++n+  +t Relae+  +s+ tv +
  EHT99363.1 15 LQVYQYIIR--HRENVSYMTIRELAEQAAVSTTTVLR 49
                678899997..79**********************76 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.076       6      53 ..      10      61 ..       9      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
                HHHHCCCHCHHHHHHCC....CHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB  6 LseyEakvYlaLlklgp....atadeiaeelgvprskvYevLrsLedkGlVe 53
                L++ E +vY++++++ +    +t++e+ae++ v+ ++v +  r++   G+ e
  EHT99363.1 10 LNDLELQVYQYIIRHREnvsyMTIRELAEQAAVSTTTVLRFCRKMHCEGWSE 61
                7899*********555434448******************999999888765 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.25      18      46 ..      31      59 ..      20      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                EEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        MarR 18 lsvseLakklgvskstvtrvldrLekkGl 46
                +++ eLa++  vs++tv r+ +++ ++G+
  EHT99363.1 31 MTIRELAEQAAVSTTTVLRFCRKMHCEGW 59
                7899************************9 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.27       1      24 [.      30      53 ..      30      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
      HTH_17  1 lltveEaAelLgvsrstvyrlirr 24
                ++t+ E+Ae   vs +tv r++r+
  EHT99363.1 30 YMTIRELAEQAAVSTTTVLRFCRK 53
                8*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2058.07
//
Query:       EHT99364.1  [L=475]
Description: 6-phospho-beta-glucosidase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-127  425.9   4.9   1.6e-127  425.7   4.9    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
    0.00043   19.8   0.0     0.0007   19.1   0.0    1.2  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.7   4.9  1.8e-131  1.6e-127       4     452 ..       2     472 ..       1     473 [. 0.89

  Alignments for each domain:
  == domain 1  score: 425.7 bits;  conditional E-value: 1.8e-131
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHH...HHGGGSTTS.....--..-SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS. CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtft...etpgkvleg.....sn..gdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG. 88 
                    ++p++Flwg+a aa+q+EG+w+++Gkg si D+ t   +   +v+ +     +   +  a+++Y +yk+D+al++e+g+k++r Si+W+Ri+P+G 
     EHT99364.1   2 SLPDTFLWGGAVAAHQVEGGWDQGGKGISIADVLTggaHGVDRVITDgvqpgKFypNHQAVEFYSHYKQDIALFAEMGFKCFRTSIAWTRIFPSGd 97 
                    58******************************654222334444433111112223678************************************* PP

                    TT---HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-. CS
  Glyco_hydro_1  89 egeinekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPg. 182
                    e ++ne+Gl++Y+ L+dell++giep++Tl H+++P+ L + +Ggw+nr+++d f +++evv++r+++kvk+w+TfnE+n   + +y +  +    
     EHT99364.1  98 EQQPNEAGLQFYDDLFDELLKYGIEPVITLSHFEMPYHLVKeYGGWHNRKVVDFFVRFSEVVLERYKNKVKYWMTFNEINNQRNWQYPLFGYCCSg 193
                    **************************************9988****************************************99999765555444 PP

                    ......S-TTTHHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG.. CS
  Glyco_hydro_1 183 ......kkdleaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrerga 271
                          +k+ +a+y+++H++++a+ar+vk+ +e++++ kig ++++  ++p+s +++d+  a e + +     f d++++G Yp+++ +  +++g 
     EHT99364.1 194 viftdhEKPEQAMYQVMHHQFVASARVVKRGHEINPDFKIGCMIAMVPVYPFSCHPDDVmLAKEAMHQR--YVFSDVQMRGYYPAYALKEWERKGY 287
                    888888999*************************************************96666666554..49*********************** PP

                    S----HHHHHHH.TT--SEEEEEEEEEEEEEE--...-STT---SSGGG.GG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----E CS
  Glyco_hydro_1 272 lpeiteedkell.kgkadflglnyYtsrlvknkeseeaslskteekkle.eevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlga 365
                      e++ ed ++l +g ad++g++yY+s+ v++++   + +  +  ++++   ++p++  +d+gw+i+p glr++l+ l+++Yq +p++i+eNG ga
     EHT99364.1 288 HIEMQPEDADTLrQGCADYIGFSYYMSNAVQHSA---SGV-DDPITGFDgVVKNPHVSASDWGWQIDPVGLRYVLNDLYERYQ-KPLFIVENGFGA 378
                    ************77899**************999...233.333333330344789***************************.9*********** PP

                    E-BSSS.HHH--HHHHHHHHHHHHHHHHHH.HTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 366 kdeiee.gkveDdkRidYlkehlnevkkai.edgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                     d+ +    +eDd+Ri Yl+ h++e+kka+ +dgvdl gY+ w+ +D ++ ++g y+kr+G+++v++      + +R +kkS+ wy++vi++ng
     EHT99364.1 379 IDKPNAqCVIEDDYRIAYLAAHIAEMKKAViHDGVDLMGYTPWGCIDCVSFTTGqYDKRYGFIHVNKnddgSGDFSRAKKKSFAWYQQVIASNG 472
                    **98766889******************988***********************************9777667899***************997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.9e-08    0.0007      22     140 ..      67     182 ..      50     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.9e-08
                 SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS....TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHH CS
   Cellulase  22 ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse....egwltkadgnssedtaeeffkklwtqiAery 116
                   k+ i++++++gf+++R  ++w ++++++++ + +e+ l+ ++++ +   + g+  ++ + +        l+k+ g  ++ +  +ff  + + + ery
  EHT99364.1  67 HYKQDIALFAEMGFKCFRTSIAWTRIFPSGDEQQPNEAGLQFYDDLFDELLKYGIEPVITLSHFempyH--LVKEYGGWHNRKVVDFFVRFSEVVLERY 163
                 568999**************************************************9888877545331..3444444466668999***99******* PP

                 TTTTTTEEEESSSS--STTCTCCT CS
   Cellulase 117 kkndevvifelmNEPhgnntgaew 140
                 k++  v  + ++NE + +    +w
  EHT99364.1 164 KNK--VKYWMTFNEINNQR---NW 182
                 544..44555899999843...36 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3335.02
//
Query:       EHT99365.1  [L=247]
Description: putative NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-55  186.7   1.6    5.5e-55  186.5   1.6    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.2e-48  165.2   0.2    1.5e-48  164.8   0.2    1.1  1  adh_short      short chain dehydrogenase
    6.3e-15   55.5   0.9    1.2e-14   54.6   0.9    1.4  1  KR             KR domain
     0.0013   18.3   0.2     0.0054   16.2   0.1    2.0  3  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.019   14.4   0.0    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   1.6   1.5e-58   5.5e-55       3     232 ..      10     246 ..       6     247 .] 0.95

  Alignments for each domain:
  == domain 1  score: 186.5 bits;  conditional E-value: 1.5e-58
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    +gIGra+A +la +G++v++ ++ +e+  ++ v+e+++++g+++ +++D+++e+qv al++++ ++   l  lvnnagi  + + ++++++ + ++
    EHT99365.1  10 SRGIGRATAVLLATRGYRVAVNYRARESeaQRVVDEIVRNGGEAFsVQADISEEAQVMALFQRLDQENLPLSLLVNNAGILFQ-QCRLEQLDAARIQ 105
                   49**********************99998778899*****999978*************************************.************* PP

                   HHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                   +++++n++++fl++++a++ m  +     gsivn+ss +a+ + p+    y+a+K+a+  l + l  e++++giRvN v pg+i T + ++   ++ 
    EHT99365.1 106 QVFATNVTGTFLCCREAVRRMGTHlgglgGSIVNVSSAAARTGSPGEYvDYAASKGAMDTLKKGLSLEVAQQGIRVNGVRPGLIYTGMHADGG-EPG 201
                   *******************9988778899**************9987779**************************************87765.688 PP

                   HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 188 lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                     ++l++  p+gr g +ee+ae++++Lasd+asyitG+++ + gG
    EHT99365.1 202 RVDRLASGVPMGRGGHAEEIAEVVVWLASDAASYITGSIIDAAGG 246
                   8999************************************99998 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.2   4.3e-52   1.5e-48       1     188 [.       2     195 ..       2     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 4.3e-52
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsels 97 
                 k +lv G+s+GIGra+a  la++G++v+v +  +e+++++v++e+ ++g +a+ +q+D++++++v al+++  ++  +l +LvnNAGi  +++  ++l+
  EHT99365.1   2 KLALVAGGSRGIGRATAVLLATRGYRVAVnYRARESEAQRVVDEIVRNGGEAFSVQADISEEAQVMALFQRLDQENLPLSLLVNNAGIlFQQCRLEQLD 100
                 679**************************9999*******************************************************87788899999 PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TT.BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  98 eeewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvag.vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 ++++++v+++N+tg+fl++r++++ m     + +G+IvnvsS a++ +++g ++ Y+AsK+a++ l + l+ e+a++girvn+v PGl+ T+m +
  EHT99365.1 101 AARIQQVFATNVTGTFLCCREAVRRMGthlGGLGGSIVNVSSAAARTGSPGeYVDYAASKGAMDTLKKGLSLEVAQQGIRVNGVRPGLIYTGMHA 195
                 999***********************9888999***************9973567**************************************87 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.9   3.3e-18   1.2e-14       4     160 ..       5     167 ..       3     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 3.3e-18
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-----.----TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl.rdklleemt 101
                 l++GG  g+G+++a  la +g r   +  R    ++++++ ++e+ ++g e   v+aD+s++++v al++++++e+ p++  ++ Ag+l ++  le+++
  EHT99365.1   5 LVAGGSRGIGRATAVLLATRGYRVA-VNYRA--RESEAQRVVDEIVRNGGEAFSVQADISEEAQVMALFQRLDQENLPLSLLVNNAGILfQQCRLEQLD 100
                 9********************7643.33344..3467788***********************************************9835678***** PP

                 HHHHHHHHTTTTHHHHH.HHHHTTT......S--SEEEEEEEHHHHH--TT-.HHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawn.Lhelled......esldffvlfSSiagllgsagq.anYaaaNaflDala 160
                 a++++qv+a  v+G+     e++++           +v +SS+a+ +gs+g+ ++Yaa    +D+l 
  EHT99365.1 101 AARIQQVFATNVTGTFLcCREAVRRmgthlgGLGGSIVNVSSAAARTGSPGEyVDYAASKGAMDTLK 167
                 **************97625677777664443334579*************98469*********986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.5e-06    0.0054       1      62 [.       4      72 ..       4      78 .. 0.91
   2 ?   -0.7   0.0      0.23   8.1e+02     137     173 ..     151     190 ..      98     208 .. 0.72
   3 ?   -3.5   0.0       1.5   5.5e+03     214     228 ..     217     231 ..     216     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke 62
                +lV+G++  iG+a++  l+++gy+v +  r ++++++   +++         v++d+ +++++ +lf++
  EHT99365.1  4 ALVAGGSRGIGRATAVLLATRGYRVAVNYRARESEAQRVVDEIvrnggeaFSVQADISEEAQVMALFQR 72
                59**********************99999998888888888779*****999*************9995 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.23
                 --SSHHHHHHHHHHHHHHHHH...HHHT-EEEEEEESEEE CS
   Epimerase 137 kpnspYaaaKlageklveaya...aqyglnaiilrlfnly 173
                      Yaa+K a++ l + +    aq+g+++  +r+  +y
  EHT99365.1 151 GEYVDYAASKGAMDTLKKGLSlevAQQGIRVNGVRPGLIY 190
                 4455688888888877655441114456666666666555 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.5
                 EHHHHHHHHHHHHHH CS
   Epimerase 214 yveDvaeaillvleh 228
                 ++e++ae++++++  
  EHT99365.1 217 HAEEIAEVVVWLASD 231
                 899999999998766 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.2e-06     0.019       1      75 [.       5      74 ..       5      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.2e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75
                   L+ G++  iG  +a lL ++gy+v +  r  +s + + ++++ ++      ++ + +++D+++++++  l+++ +
     EHT99365.1  5 LVAGGSRGIGRATAVLLATRGYRVAVNYRARESEAQRVVDEIVRN-----GGEAFSVQADISEEAQVMALFQRLD 74
                   79999999****************999999888888888888764.....456789***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1825.14
//
Query:       EHT99366.1  [L=957]
Description: glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-191  636.1   1.2   2.7e-179  596.5   0.1    3.0  3  GDC-P            Glycine cleavage system P-protein
    3.7e-06   26.5   0.0    9.9e-06   25.0   0.0    1.7  1  Beta_elim_lyase  Beta-eliminating lyase
    4.4e-05   22.6   0.2    0.00032   19.8   0.0    2.0  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.04   14.6   0.3       0.16   12.6   0.2    2.1  2  nsp7             nsp7 replicase
      0.072   13.0   0.0       0.25   11.3   0.0    1.9  1  GFRP             GTP cyclohydrolase I feedback regulatory pro


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  596.5   0.1  7.5e-183  2.7e-179       1     430 []      16     440 ..      16     440 .. 0.98
   2 !   35.4   0.0   1.5e-12   5.3e-09      46     289 ..     477     739 ..     448     748 .. 0.80
   3 ?    1.5   0.0     0.029     1e+02     331     365 ..     765     799 ..     759     807 .. 0.89

  Alignments for each domain:
  == domain 1  score: 596.5 bits;  conditional E-value: 7.5e-183
                 HHH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S---------HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS--S- CS
       GDC-P   1 erhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleapksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewytaYtP 99 
                 erhigps ++q  mLe++G++sl +li++ v ++i+l+ +  + ++++E+++lael++ia++n  +ks+iG+Gy ++i+P+vi+rn+lenp+wytaYtP
  EHT99366.1  16 ERHIGPSPEQQAVMLEAIGASSLASLIGSIVSADIQLPGPPAVGDAATEQQALAELKAIAAQNLRYKSWIGMGYSAVITPPVILRNMLENPGWYTAYTP 114
                 69************************************************************************************************* PP

                 SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS.--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-...S CS
       GDC-P 100 YqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkk.akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtdkek 197
                 Yq+E+sqGrLeallnfq++++dltG+dia+asllDe+tAaaEA+++a+r+sk k a++++++ ++hpqtl+v++tra+++g+e++++   +ek+ + ++
  EHT99366.1 115 YQPEVSQGRLEALLNFQQVTIDLTGMDIASASLLDEATAAAEAMAMAKRISKLKnANRIFIADDIHPQTLDVVRTRAETFGFELIIDS--AEKALE-HD 210
                 ****************************************************88689****************************999..444443.69 PP

                 -EEEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG--S-EEEEEEBTT CS
       GDC-P 198 evagvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvGvskDae 296
                 +++gvl+q+++t+G+++d+++l++++k +k++v+va+d +aL+ll++Pg++gaDiv+GsaqrfGvP+gyGGPha+ffA ++++kR++PGR++Gvs+Da+
  EHT99366.1 211 NLFGVLLQQVGTTGEVHDYTSLIAELKTRKVVVSVASDFMALVLLESPGKQGADIVFGSAQRFGVPMGYGGPHAAFFASRDEHKRSMPGRIIGVSRDAA 309
                 *************************************************************************************************** PP

                 S-EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SSBSSEEEEE--TTTHHHHHHHH CS
       GDC-P 297 gkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkkffdtllieveekaaekvlkka 395
                 g++alr+a+qtREqHirR+kA+sniCt+q+LlAn+a lyav+hG+ glk+ia rih+ t+ila++l++  + +l+++++fdtl++ v +kaa  vl++a
  EHT99366.1 310 GNTALRMAMQTREQHIRREKANSNICTSQVLLANIAGLYAVFHGPVGLKRIASRIHRFTDILAAGLQR-GGLKLRHHHWFDTLTVDVTDKAA--VLNRA 405
                 ******************************************************************99.6******************9999..***** PP

                 HHTTEE-EEESTTEEEEE--TT--HHHHHHHHHHH CS
       GDC-P 396 ekeglnlrkvelktvgialdEtvtkedieallkvl 430
                 ++ g+nlr+  +++vgi+ldEt+++ed+++l+++l
  EHT99366.1 406 LNFGVNLRSDIHNAVGITLDETTCREDVATLFAIL 440
                 *******************************9986 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 1.5e-12
                 -.....--HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHH CS
       GDC-P  46 p.....ksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqaEisqGrLeallnfqtlvadltGldianasllDegtA 138
                 p     +sE+e+++ ++++ +k+    + +i  G   ++l a+ +   +  pe+        aE + G L+ + +  + +++ltG d     +  ++ A
  EHT99366.1 477 PvfnrhHSETEMMRYMHSLEKKDLAlNQAMIPLGSCTMKLNAAAEMIPITWPEFAEMHPFCPAEQAGGYLQMIGQLSQWLVQLTGYDA--LCMQPNSGA 573
                 3444449****************997899**************99988999**9876655568**********************996..578999999 PP

                 HHH.HHHHHHHH...-SSS--E..EEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-.............S-EEEEEEEES-TTSB---.-HHHH CS
       GDC-P 139 aaE.Avllaara...skkkakk..vvvdkkvhpqtlevlktrakglgieivevdlteekvtd..........kekevagvlvqypnteGried.lkelv 220
                  +E A lla r    s+++ ++   ++ ++ h          a+  g+++v+v + +++  d            ++++ ++v yp+t+G  e+ ++e+ 
  EHT99366.1 574 QGEyAGLLAIRRyheSRGEGERhlCLIPSSAHGT----NPASAQMAGMDVVVVACDKQGNIDlgdlrekaaqAGDKLSCIMVTYPSTHGVYEEtIREVC 668
                 9994445555541114444444113444444443....346788899999999999999988999999988778999************9987689*** PP

                 HHHHHTT-EEEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG--S-EE CS
       GDC-P 221 ekakkkkslvvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlv 289
                 + ++++   v +  a++ a + +++Pg +gaD+  +   + f +P g GGP  g + vk++l+  +PG  v
  EHT99366.1 669 QIVHQYGGQVYLdGANMNAQVGITTPGYIGADVShLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSV 739
                 ******9998873577778888***********84677889**************************9755 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
       GDC-P 331 laalyavyhGkeglkeiarrihkkteilakelkkk 365
                 ++ +y+ + G+eglk+ +     +++++a+ lk++
  EHT99366.1 765 ISWMYIRMMGAEGLKQASSVAILNANYIASRLKSA 799
                 6789***************************9875 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.8e-09   9.9e-06      37     170 ..     552     684 ..     540     716 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.8e-09
                      HHHHHHHHTT-SEEEE....ES-HHHHHHHHH.HHH--TT..EEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-T CS
  Beta_elim_lyase  37 Ledavaelfgkeaalf....vpqGtaAnsill.killqrg..eevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevga 123
                      L + + +l+g++a        +qG  A  +++ +++  rg  e  ++ +p+  h  ++ a a++ag+ ++ +  +++G++dl +l+++ ++ g+
       EHT99366.1 552 LSQWLVQLTGYDALCMqpnsGAQGEYAGLLAIrRYHESRGegERHLCLIPSSAHG-TNPASAQMAGMDVVVVACDKQGNIDLGDLREKAAQAGD 644
                      5555666777777665223334666666666654455554114568888887775.667888*************************9999666 PP

                      TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETT CS
  Beta_elim_lyase 124 heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgAR 170
                         k ++i++t          v  e +rev +i+++yg ++ lDgA 
       EHT99366.1 645 ---KLSCIMVTYPSTH----GVYEETIREVCQIVHQYGGQVYLDGAN 684
                      ...9999999987664....47899********************94 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.08   2.9e+02     127     209 ..     198     280 ..     168     281 .. 0.71
   2 !   19.8   0.0   8.9e-08   0.00032     109     207 ..     612     715 ..     581     735 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.08
                  BEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT-E CS
  Aminotran_5 127 ldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgPtGiG 209
                  l +d +ek+l+++     + +   +tG +++  ++++ +k ++++v v +  +++       k+g+D+++ s++ +  P G G
   EHT99366.1 198 LIIDSAEKALEHDNLFGVLLQQVGTTGEVHDYTSLIAELKTRKVVVSVASDFMALVLLESPGKQGADIVFGSAQRFGVPMGYG 280
                  446777778875544444444555699*********99999999888855555555555778999999999999988888865 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 8.9e-08
                  HHHHTEEEEEEEBETTSCBEGGGHHHH--...TTEEEEEEESBETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTTS---HH.HHTESEEEEETTT CS
  Aminotran_5 109 akrtgakvkvipldeegeldldeleklln...ektklvaithvsnvtGt.iqpveeigklakkkgalvlvDaaqavghipidvk.klgvDflafsghK 201
                  a+  g++v+v+  d++g++dl +l+++ +   +k + +++t   +++G+  + + e++++++++g  v +D+a +  +  i +   +g+D+  +  hK
   EHT99366.1 612 AQMAGMDVVVVACDKQGNIDLGDLREKAAqagDKLSCIMVTYP-STHGVyEETIREVCQIVHQYGGQVYLDGANMNAQVGITTPgYIGADVSHLNLHK 708
                  45679****************9997777422255666666555.568998899*********************9999888876268*********** PP

                  .TTSSTT CS
  Aminotran_5 202 .llgPtG 207
                   ++ P G
   EHT99366.1 709 tFCIPHG 715
                  9999998 PP

>> nsp7  nsp7 replicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   4.5e-05      0.16      33      75 ..     414     456 ..     410     463 .. 0.88
   2 ?   -2.7   0.0       2.7   9.7e+03      55      74 ..     619     638 ..     607     646 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHCSSSCHHHHHHHCCCHHHHHCCTTCCCHHHHHHHH CS
        nsp7  33 velHneilladDleealekllallvvllskdsavdleelvddy 75 
                 +++Hn + ++ D +++ e +++l+++ll  d  +d+++l  ++
  EHT99366.1 414 SDIHNAVGITLDETTCREDVATLFAILLGDDHGLDIDQLDSQV 456
                 689*********************************9986554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
                 CHHHHHCCTTCCCHHHHHHH CS
        nsp7  55 llvvllskdsavdleelvdd 74 
                 ++vv   k++++dl++l ++
  EHT99366.1 619 VVVVACDKQGNIDLGDLREK 638
                 34444457899999999876 PP

>> GFRP  GTP cyclohydrolase I feedback regulatory protein (GFRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     7e-05      0.25       4      64 ..      45     108 ..      44     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
        GFRP   4 listqirlelGpTivGdessdpeLmkeLgaklrkvlgnkf...keylvedpprvvL.nkLekkGy 64 
                 ++s+ i+l  Gp  vGd   +++ ++eL+a   ++l  k      y+   +p v+L n+Le+ G+
  EHT99366.1  45 IVSADIQL-PGPPAVGDAATEQQALAELKAIAAQNLRYKSwigMGYSAVITPPVILrNMLENPGW 108
                 58889999.89*******************999998544312234555666666665999**999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6578.83
//
Query:       EHT99367.1  [L=128]
Description: glycine cleavage complex lipoylprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-46  156.1   0.0    3.8e-46  155.9   0.0    1.0  1  GCV_H          Glycine cleavage H-protein
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.027   14.4   0.0    1.2  1  RnfC_N         RnfC Barrel sandwich hybrid domain
      0.028   14.2   0.0       0.05   13.4   0.0    1.4  1  Biotin_lipoyl  Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.0   6.4e-50   3.8e-46       1     119 [.       8     126 ..       8     128 .] 0.98

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 6.4e-50
                 -EE-TTSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-TTTTT--EEEE CS
       GCV_H   1 lyytkehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdpyeegWliklk 99 
                 l+y ++hew++++ dg +tvGit++aqe lgd+vf++lpevg++ ++ge++a+ EsvKaas++y+pvsGe++ vN++l+++pel+N++py++gWl+++k
  EHT99367.1   8 LKYRDSHEWLRKNADGSYTVGITEHAQELLGDMVFMDLPEVGATFAAGEECAVAESVKAASDIYSPVSGEIIAVNDALNDSPELVNSEPYQDGWLFQIK 106
                 69************************************************************************************************* PP

                 ES-GGGGGGSEEHHHHHHHH CS
       GCV_H 100 lsnleeleeLlsaeeyekll 119
                 +s+++el++Ll+a++y++ +
  EHT99367.1 107 ASDESELDSLLDADAYKASI 126
                 ****************9876 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.5e-06     0.027      48      90 ..      48      91 ..      43      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.5e-06
      RnfC_N 48 vgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsg 90
                vg +   G+  a ae+   ++ ++++vsG+++a++++l+ +++ 
  EHT99367.1 48 VGATFAAGEECAVAESvKAASDIYSPVSGEIIAVNDALNDSPEL 91
                6667778888887777445789*************998877765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.3e-06      0.05      22      56 ..      47      81 ..      39      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.3e-06
                   STTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEE CS
  Biotin_lipoyl 22 kvGdkVkagqvlaeveamKmemeieapkaGvvkei 56
                   +vG + +ag+  a+ e+ K+  +i +p++G +  +
     EHT99367.1 47 EVGATFAAGEECAVAESVKAASDIYSPVSGEIIAV 81
                   79******************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 935.49
//
Query:       EHT99368.1  [L=365]
Description: aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-84  282.0   0.7    4.9e-84  281.7   0.7    1.1  1  GCV_T     Aminomethyltransferase folate-binding domain
      2e-13   50.1   0.0    4.5e-13   48.9   0.0    1.6  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain
     0.0081   16.5   0.0      0.015   15.6   0.0    1.4  1  POPLD     POPLD (NUC188) domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.7   8.1e-88   4.9e-84       1     257 []       7     254 ..       7     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 8.1e-88
       GCV_T   1 lydrhkalgakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkp.gkatytlllnedGgvidDlivar 98 
                 l+d+h+++ga++v+f+gw mP++Y  +s  +eh+avr++ag+fDvShm+ +++ G    ++L  ll+nd+++l + gka yt +ln +GgvidDliv+ 
  EHT99368.1   7 LFDQHQENGARMVDFHGWMMPLHY--GSQLDEHHAVRNDAGMFDVSHMTIVDLHGARTREFLRFLLANDVARLTQpGKALYTGMLNASGGVIDDLIVYF 103
                 789*********************..*********************************************98766*********************** PP

       GCV_T  99 ldedefllvvnaankekdlawlekaaekkdldvevedvteelallalqGPkarevlskll.gadlselkffsfaevelaggkkvlvsRtgytGedGfei 196
                 +de+ f+lvvn+a++ekdlaw++++a+  ++ vev++  ++la++a+qGP+a++ ++ l+ +a+ + ++ ++ +   ++ + ++++++tgytGe G+ei
  EHT99368.1 104 MDETFFRLVVNSATREKDLAWINEHAQ--GYGVEVRE-RDDLAMIAVQGPQAQQKAQTLFsDAQRQAVQGMKPFF-GIQ-AGELFIATTGYTGETGYEI 197
                 ************************999..********.778*******************766677777776663.333.679**************** PP

       GCV_T 197 yipaeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglgwa 257
                  +pa++a  +w++Ll+a    gvkpaGlgArdtlRlEag++lyg+++de+++Pl a++gw+
  EHT99368.1 198 ALPAAQAVTFWQRLLAA----GVKPAGLGARDTLRLEAGMNLYGQEMDESVSPLAANMGWT 254
                 **************755....57************************************95 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   7.6e-17   4.5e-13       2      79 ..     280     357 ..     279     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 7.6e-17
     GCV_T_C   2 rlvgleld.dgapllrggepil.r..dgev.vGhvTSgaysptlgksialAyvkaelaklgtevevevrgkrvpaevvkkpfy 79 
                 +lvgl l  +   +lr g p+     +g++  G +TSg +sptlg sialA v+a+    g++  ve+r++++p++v+k++f+
  EHT99368.1 280 KLVGLILTeK--GVLRNGLPVRfTdsQGQMqQGIITSGSFSPTLGYSIALARVPAGI---GEDAIVEIRNREMPVKVTKPVFV 357
                 79*****634..589******64234555526**********************887...558888899999*********96 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-06     0.015       1      44 [.     194     237 ..     194     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-06
       POPLD   1 gwdlilPwgwglpfwlsLvrvgvrvgGlrerrqlalesgkpyfP 44 
                 g+ + lP+  + +fw++L   gv+++Gl  r +l le+g+  + 
  EHT99368.1 194 GYEIALPAAQAVTFWQRLLAAGVKPAGLGARDTLRLEAGMNLYG 237
                 578899********************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2664.51
//
Query:       EHT99369.1  [L=400]
Description: putative FAD/NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-25   90.5   0.1    3.3e-25   89.1   0.1    1.6  1  FAD_binding_3   FAD binding domain
    4.6e-05   23.2   0.1    6.4e-05   22.7   0.1    1.4  1  DAO             FAD dependent oxidoreductase
    7.6e-05   21.9   0.0    0.00016   20.9   0.0    1.4  1  SE              Squalene epoxidase
    0.00019   20.6   0.5       0.04   13.0   0.1    2.9  3  Lycopene_cycl   Lycopene cyclase protein
    0.00028   20.1   0.5    0.00057   19.1   0.5    1.5  1  FAD_binding_2   FAD binding domain
      0.001   19.6   0.1      0.002   18.7   0.1    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0021   18.2   0.1      0.006   16.8   0.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0046   16.2   0.1      0.088   12.0   0.1    2.2  2  Thi4            Thi4 family
  ------ inclusion threshold ------
       0.03   13.2   0.2        6.4    5.5   0.1    2.3  2  Trp_halogenase  Tryptophan halogenase
       0.07   13.4   0.0       0.65   10.3   0.0    2.1  2  TrkA_N          TrkA-N domain
       0.11   11.7   0.1       0.23   10.7   0.1    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.17   10.6   1.1       0.87    8.2   1.1    1.9  1  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.1   2.2e-28   3.3e-25       2     344 ..       4     345 ..       3     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.2e-28
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS......SSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr......sttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle 91 
                    +dV+I G+G +Gl  a  L+  G r  ++e+       +t+++  r + +n  + +ll++l ++ +il+  a+     e++  +    +   +  +
     EHT99369.1   4 YDVVIAGGGMVGLAVACGLQGSGLRIAVLEQApepqfdATASPSVRVSAINAASERLLQKLDVWSTILSLRASPYQAMEVWDRD----SFGAISFD 95 
                    79****************************972222224556666***********************9875444444444444....23334444 PP

                    .CHHCST-C.EE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEE CS
  FAD_binding_3  92 .lessperv.tvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvye 184
                     ++++ ++  +++  + +  +L ++a+++  +++  +  ++ +       +a ++ ++ g    ++a+ +v+aDG++S+ r++++i+++  +  ye
     EHT99369.1  96 gEQQGLTHLgHIIENPVIHCALWQRARQCSdVTLLPSSHLQQVAF--GDNEAFITLQDGGM---MSARLMVAADGANSWLRNKADIPLTFWD--YE 184
                    335555555145555566778999999999999999999995544..44458888886555...5********************9987777..66 PP

                    EEEEEEEEEC-SCCCTTCCEEEEE.CCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEE.EEEEEEEEEEEE CS
  FAD_binding_3 185 agvldvlfdadlsdiveplvlils.aesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveie.evsawtvaqrva 278
                     + l +++++ ++   ++ v+ +    +++++++P+++  +   +++++++++++r e + e+   ++l  +++      e+e e +a+++ +r+a
     EHT99369.1 185 HHALVANIRTSMP--HDG-VARQVfHGDGILAFLPMQD-PHLCSIVWSLSPQEATRLETMPEALFNQQLSVAFDMRLGLCELEgERKAFPLTARYA 276
                    7777666666555..444.555550555566*******.5556788888888899999999999999**********99999736789******** PP

                    SSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHH...HHHHHHHTTSS-GGGGHHHHHHHHHHHHH CS
  FAD_binding_3 279 ekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLa...wkLaavlkGeAkeelLdtYeeerravaqa 344
                    +++   r+ l+GDAaH+  P +GqG+N++ +Da +L    + L +  k  ++   L  Ye+ r+  a+ 
     EHT99369.1 277 RSFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIgevRRLHQQGKDIGQHLYLRRYERSRKHSAAM 345
                    ************************************622255666666667777888888888877765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   4.3e-08   6.4e-05       1      39 [.       5      45 ..       5     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.3e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgr 39
                dvvi GGG++Gl++A  L+  g  +++le+++++   a+  
  EHT99369.1  5 DVVIAGGGMVGLAVACGLQGSGlrIAVLEQAPEPQFDATAS 45
                9*****************8888**********999877765 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     1e-07   0.00016     124     217 ..     276     369 ..     260     384 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1e-07
          SE 124 asknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvle..elksfyvkRkeldavvnvLsialyslfaadsdelkalrk 217
                 a++   + l l+GDa    HPl g G+  +++D++ l+  ++ l++  + + + +  +l+ + ++Rk+++a++    + + +lfa ++ + k lr 
  EHT99369.1 276 ARSFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIGEVRRLHQ--QGKDIGQhlYLRRYERSRKHSAAMMLAGMQGFRELFAGNNPAKKLLRD 369
                 5566667899************************988888887744..3444544116789**********99999999*****999988888876 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.7e-05      0.04       1      41 [.       5      43 ..       5      77 .. 0.87
   2 ?    2.0   0.0     0.056        84     100     143 ..     126     168 ..      92     211 .. 0.83
   3 ?    2.6   0.0     0.039        58     213     319 ..     241     346 ..     230     361 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnn 41
                   Dvv+ G+G  gl++A  l  +  gl++ ++e +p++ f + 
     EHT99369.1  5 DVVIAGGGMVGLAVACGL--QGSGLRIAVLEQAPEPQFDAT 43
                   9*****************..*************99988665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.056
  Lycopene_cycl 100 ngvklleakvesveeeeageslvvleggrkirarlvvdarglas 143
                    +   l ++  ++v+  ++ e  ++l++g  + arl v a g+ s
     EHT99369.1 126 DVTLLPSSHLQQVAFGDN-EAFITLQDGGMMSARLMVAADGANS 168
                    444555677788887777.99********************765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.039
  Lycopene_cycl 213 padalkkrlaaylra.lglkvkevveeEqgviPvtlggslprleqk.vlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres..slsaraw 304
                    p+ +++++l+   +  lgl ++   e E+   P+  ++ ++ ++++  + +G aa  +hP  G  v      a  l   + ++ + +  ++ ++  
     EHT99369.1 241 PEALFNQQLSVAFDMrLGLCEL---EGERKAFPL-TARYARSFAAHrLALVGDAAHTIHPLAGQGVNLGFMDAAELIGEVRRLHQ-QgkDIGQHLY 331
                    5555555555544444444443...567888999.7888888888835669************9998877776644444433333.2244445555 PP

  Lycopene_cycl 305 atlwprerkrqreff 319
                     + + r+rk  +++ 
     EHT99369.1 332 LRRYERSRKHSAAMM 346
                    555555555555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   3.8e-07   0.00057       1      39 [.       5      43 ..       5      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.8e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39
                   Dv++ G+G+ GLa A  ++  Gl++av+e+++e +  ++
     EHT99369.1  5 DVVIAGGGMVGLAVACGLQGSGLRIAVLEQAPEPQFDAT 43
                   9*****************************998666444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.3e-06     0.002       2      44 ..       6      46 ..       5      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeask 44
                vv+ GgG +gl +A+ l+  g ++ v+e ++++   +D++as 
  EHT99369.1  6 VVIAGGGMVGLAVACGLQGSGLRIAVLEQAPEPQ--FDATASP 46
                8*******************************99..9999875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     4e-06     0.006       1      31 [.       8      38 ..       8      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   I G+G+ Gl+ A+ L+  g+++ +le+++ +
     EHT99369.1  8 IAGGGMVGLAVACGLQGSGLRIAVLEQAPEP 38
                   67*************************9876 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   5.9e-05     0.088      18      49 ..       4      34 ..       1      38 [. 0.92
   2 ?    1.7   0.0     0.082   1.2e+02      60      87 ..     349     377 ..     335     385 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 Dvvi G+G  GL+ a  l  + +l++a+le+
  EHT99369.1  4 YDVVIAGGGMVGLAVACGLQGS-GLRIAVLEQ 34
                6******************999.********8 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.082
                 TSTTBSEEEE.ETTTHHHHHHTT---EEE CS
        Thi4  60 GGqlfsaivv.rkpakelLdelgikyede 87 
                 G q f ++   ++pak+lL+++g+k+ d+
  EHT99369.1 349 GMQGFRELFAgNNPAKKLLRDVGLKLADN 377
                 55667776653689**********99986 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0043       6.4       1      34 [.       5      35 ..       5      64 .. 0.89
   2 ?    5.4   0.0    0.0046       6.9     189     347 ..     146     313 ..     132     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0043
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvese 34
                    ++vi+GGG  G  +A+ l+  +   l++ ++e++
      EHT99369.1  5 DVVIAGGGMVGLAVACGLQGSG---LRIAVLEQA 35
                    69***********999998887...889988875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0046
                     EEEETTS-EEE-SEEEE-SGGG-IIIIIIT---EEE-TTT----EEEEEEEE--H---SSEEEEE-SSEEEEEEEETTEEEEEEEE-TTTS.... CS
  Trp_halogenase 189 slrledgreveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavqveseelvepytrataekaGWtWkiPLqhrlgnGyvyssaha.... 279
                      ++l+dg  ++a+l++ + G ++ l ++a + + + w        Al+++++++ + + ++r + +  G     P+q+     +v+s +      
      EHT99369.1 146 FITLQDGGMMSARLMVAADGANSWLRNKA-DIPLTFWDYEH---HALVANIRTSMPHDGVARQVFHGDGILAFLPMQDPHLCSIVWSLSPQeatr 236
                     56889999999999999999999999999.66666666554...899999999999999999999999999999999988888888876664444 PP

                     .........-HHHHHHHHHHHCT-.-TTTS-EEEE---EEES-SEETTEEE-CCCTEE--CCCS-HHHHHHHHHHHHH CS
  Trp_halogenase 280 .........dddeAlaellaeldg.kleaeprkirfttGrrkqawvknvvalGlasgfvePlestsihliqaalrrLl 347
                              + ++   ++  +l++ +le e ++ ++t+ + +++  + + ++G+a+  + Pl ++++ l   ++ +L+
      EHT99369.1 237 letmpealfN-QQLSVAFDMRLGLcELEGERKAFPLTARYARSFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELI 313
                     4433222211.1111112222222112233355556666688888899999999999999999999999887776664 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00043      0.65       1      60 [.       6      66 ..       6      72 .. 0.87
   2 ?    0.3   0.0      0.56   8.3e+02      43      69 ..     137     163 ..     126     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00043
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHH.HHHHHHTTSEEEES-TTSHHHHHHTTG CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeer.veelreeglevvvgdatdeevLeeagi 60
                ++i+G G vG ++a  L+ +g ++ v ++ +e  ++  +   ++v   +a++e +L+++++
  EHT99369.1  6 VVIAGGGMVGLAVACGLQGSGLRIAVLEQAPEPqFDATASPSVRVSAINAASERLLQKLDV 66
                79*****************6646********874777777779*************99876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.56
                 EEEES-TTSHHHHHHTTGGGESEEEE- CS
      TrkA_N  43 evvvgdatdeevLeeagiekadaviaa 69 
                 +v  gd     +L++ g+++a++++aa
  EHT99369.1 137 QVAFGDNEAFITLQDGGMMSARLMVAA 163
                 57889999999*************998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00015      0.23       2     178 ..       5      39 ..       3      70 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  dv                                                                                                
   EHT99369.1   5 DV------------------------------------------------------------------------------------------------ 6  
                  45................................................................................................ PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                                                                v+ GgG++G+ +A+ l   g ++ ++e+++++ 
   EHT99369.1   7 ----------------------------------------------VIAGGGMVGLAVACGLQGSGLRIAVLEQAPEPQ 39 
                  ..............................................555555555555555555555555555555543 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.1   0.00058      0.87       1     167 [.       4     169 ..       4     175 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00058
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE-ST CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelkeeds 98 
                  +dv++ GgG  Gl  A  ++  g r+++le+a+++      +    + v+ ++++ e+ll+++   ++ l+   s +++ ++ +  +   + +  e++
   EHT99369.1   4 YDVVIAGGGMVGLAVACGLQGSGLRIAVLEQAPEPQF--DATASPSVRVSAINAASERLLQKLDVWSTILSLRASPYQAMEVWDRDSFGAISFDGEQQ 99 
                  58*****************************987753..33333344444444666666666666666666666666666666665556666666666 PP

                  TEEEETT.-CHHHHHH.HHHHHHH.HT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like  99 grlFpvsdkaedivda.llkelke.agvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  g     +   ++++++ l +++++ ++v+l  ++++++v+  +++   +++++++ ++a+ +v A G +S+
   EHT99369.1 100 GLTHLGHIIENPVIHCaLWQRARQcSDVTLLPSSHLQQVAFGDNE-AFITLQDGGMMSARLMVAADGANSW 169
                  666666655566665433333333256666666666666555555.4444456666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2875.94
//
Query:       EHT99370.1  [L=392]
Description: FAD/NAD(P)-binding 2-octaprenyl-6-methoxyphenol hydroxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-27   96.3   0.6    2.6e-27   96.0   0.6    1.1  1  FAD_binding_3   FAD binding domain
    5.8e-09   35.5   4.4    6.5e-08   32.0   0.6    2.7  2  Lycopene_cycl   Lycopene cyclase protein
    1.4e-05   24.9   1.6     0.0022   17.6   0.5    2.2  2  DAO             FAD dependent oxidoreductase
      2e-05   24.0   0.3     0.0032   16.8   0.0    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.3e-05   23.4   2.6     0.0043   16.0   0.2    2.8  2  Trp_halogenase  Tryptophan halogenase
    0.00024   21.1   1.7       0.21   11.6   0.2    2.6  2  NAD_binding_9   FAD-NAD(P)-binding
    0.00045   19.4   0.0    0.00065   18.8   0.0    1.2  1  SE              Squalene epoxidase
  ------ inclusion threshold ------
      0.023   15.2   0.1        2.2    8.9   0.0    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      0.039   12.6   0.4      0.091   11.4   0.0    1.7  2  HI0933_like     HI0933-like protein
       0.11   12.8   0.0       0.27   11.6   0.0    1.7  1  PilZ            PilZ domain
       0.14   12.4   0.1        3.1    8.1   0.1    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.6   1.6e-30   2.6e-27       3     339 ..       2     337 ..       1     344 [. 0.79

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.6e-30
                    EEEEE--SHHHHHHHHHHHHTTHH....EEEEESSSSSCCSS.....S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC...CEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvr....vvlvekrsttvvlp.....radglnqrtmellrqlGledrilaegapnelmgealynelsdt...pka 86 
                    +VlI G+G +G++lal  s    +    v+l+e  + +++       ra  l+  t + l ++ l++ri+  ++p  +++   ++        +  
     EHT99370.1   2 TVLIAGGGMTGATLALAISHL-TQgalpVTLIESSEPASRAHpgydgRAIALSAGTCQQLANINLWQRIAPCATPITTIHVSDRGH---AgfvSLT 93 
                    7**************998865.334457*****99888765446666**************************7766544444444...2223444 PP

                    EEEHHCHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEE CS
  FAD_binding_3  87 radlelesspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeet 181
                      d+ + + +   +v+   ++ + L +++++++ +++r  ++v+++++++ +v+ ++ +      e+++a+ lv+aDG rS+v+++ gi+ ++e  
     EHT99370.1  94 ASDYAIPALG---QVVELFDVGQRLFAQLKQAPgVTLRCPARVTNVNRTQAHVKVTLDND-----EQLDADVLVAADGTRSAVAAACGIQWQTET- 180
                    4455533333...344444566667777777766******************99988766.....48***********************88887. PP

                    EEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEEEEEE CS
  FAD_binding_3 182 vyeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv.eieevsawtvaqr 276
                     y+   l ++++++++   ++  + + +e++ ++++P+++  +r  +++  + +k+ + e+ ++e    +l+ ++g+   +     +  ++++a +
     EHT99370.1 181 -YQQLALIANVTSEIP--HQGRAFERFTEFGPLALLPMSD--NRLSLVWCHSLDKRPQLERWDDETFLSELQHAFGWRLGKFtHTGKRDIYPLALQ 271
                    .455555556566666..4458999***************..66667777778889999**********************955566779****** PP

                    EESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-G...GGGHHHHHHHH CS
  FAD_binding_3 277 vaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAke...elLdtYeeerr 339
                     ae+  + rv  +G Aa +  P +GqG N++++D++ La  La + + + ++   ++++ Y ++r+
     EHT99370.1 272 QAEPVVSHRVATVGNAAQTLHPIAGQGFNLGLRDVMSLAETLATAHRQQQDPgsyAVMQHYRQRRQ 337
                    ********************************************9998766511145555555554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.02        33       2      36 ..       3      38 ..       2      44 .. 0.80
   2 !   32.0   0.6     4e-11   6.5e-08     104     317 ..     128     341 ..     113     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.02
  Lycopene_cycl  2 vvviGaGpAglslAarlte.akpglkvvlieaspsl 36
                   v++ G+G  g  lA  + +  + +l v+lie+s+  
     EHT99370.1  3 VLIAGGGMTGATLALAISHlTQGALPVTLIESSEPA 38
                   7899****99999988744166789******99865 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 4e-11
  Lycopene_cycl 104 lleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyGvevevdnppfdldkmvlMDfrveqklkgltFlYalPldsdrl 199
                    +  a+v++v+  +a ++ v+l+++++++a + v a g  ++  a ++g+Q       +++    +++  +    r  + + ++  l  lP++++rl
     EHT99370.1 128 RCPARVTNVNRTQA-HVKVTLDNDEQLDADVLVAADG-TRSAVAAACGIQWQTETYQQLALI-ANVTSEIPHQGRAFERFTEFGPLALLPMSDNRL 220
                    5679******9999.**********************.777777777777555554444444.3466666667777777788888999******98 PP

  Lycopene_cycl 200 .lvEeTelaskpeLpadalkkrlaaylralglkvkevveeEq.gviPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaa 293
                     lv   +l ++p+L + + ++ l++  +a g++  +  ++ +  + P++l    p +  +v+ +G aa   hP  G  +   l+    la+ +a a
     EHT99370.1 221 sLVWCHSLDKRPQLERWDDETFLSELQHAFGWRLGKFTHTGKrDIYPLALQQAEPVVSHRVATVGNAAQTLHPIAGQGFNLGLRDVMSLAETLATA 316
                    789999*******************9999*****999888651688*****************************************9******99 PP

  Lycopene_cycl 294 lres.slsarawatlwprerkrqre 317
                     r++ ++   a  +++++ r+++r+
     EHT99370.1 317 HRQQqDPGSYAVMQHYRQRRQQDRA 341
                    9987567778888999999988886 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.5   1.3e-06    0.0022       2      36 ..       3      42 ..       2      70 .. 0.76
   2 !    6.5   0.0    0.0033       5.3     152     267 ..     115     224 ..      93     303 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                EEEECTSHHHHHHHHHHHHT..T...EEEEESSSSTTSSG CS
         DAO  2 vviiGGGiiGlstAyeLarr..g...Vtllekgdiagsga 36
                v+i GGG++G++ A++ +    g   Vtl+e+++ a+++ 
  EHT99370.1  3 VLIAGGGMTGATLALAISHLtqGalpVTLIESSEPASRAH 42
                89***************643337999*******5444344 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0033
                 HHHHH.HHTT-EEEESECEEEEEEEETCEEEEE.EECTEEE.EEEEEEEE--GGGHHHHHTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEE CS
         DAO 152 laraa.ealGveilegtevtgleeedgkvwgve.rttpgen.daadavVnaaGawsdllgll.keldlpispvrgqvlvlkplseklvspaailpvpet 246
                 l +++ +a Gv+++  ++vt+++++    ++v+ +  + e+ da d +V a G  s  +  + ++   + + +  q   +++++   + p+++ +   +
  EHT99370.1 115 LFAQLkQAPGVTLRCPARVTNVNRT---QAHVKvTLDNDEQlDA-DVLVAADGTRSAVA-AAcGIQ-WQ-TETYQQLALIANVTS--EIPHQGRAFE-R 203
                 5555426679************775...3444332222333244.77888888776433.222222.22.334444444444444..3455555554.7 PP

                 EETTTTEEEEEETTSEEEEEE CS
         DAO 247 dddgrgvyvtprkdgrvlvGg 267
                  ++++ + ++p+ d+r+ +  
  EHT99370.1 204 FTEFGPLALLPMSDNRLSLVW 224
                 788888888888888866543 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0058       9.4     145     175 ..       3      36 ..       1      52 [. 0.67
   2 !   16.8   0.0   1.9e-06    0.0032     185     241 ..     111     168 ..      91     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0058
                  EEEES-SHHHHHHHHHHHHH..T-.EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxx..xx.xxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalakl..gk.evtlveard 175
                  +++ GgG++G  lA a++ l  g+  vtl+e  +
   EHT99370.1   3 VLIAGGGMTGATLALAISHLtqGAlPVTLIESSE 36 
                  6777888888888888666633332477777654 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.9e-06
                  HHHHHHHHHHHT.TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES- CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealeke.GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpst 241
                  ++++l ++l++  Gv++++ ++v+++++ + +++v+l++ e++dad +v a G r   
   EHT99370.1 111 VGQRLFAQLKQApGVTLRCPARVTNVNRTQAHVKVTLDNDEQLDADVLVAADGTRSAV 168
                  5667777888989***************999999*******************99765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   2.7e-06    0.0043       2      35 ..       3      36 ..       2      42 .. 0.95
   2 !    5.8   0.2    0.0032       5.2     165     358 ..     121     321 ..     110     339 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvesee 35
                    ++i+GGG  G + A a+++ ++g l vtl+es+e
      EHT99370.1  3 VLIAGGGMTGATLALAISHLTQGALPVTLIESSE 36
                    89*****************************986 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0032
                     HHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT---EEE-TTT----EEEEEEEE--H---SSEEEEE-SSEEE CS
  Trp_halogenase 165 earGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavqveseelvepytrataekaGWt 259
                     +a Gvt +    v+ + + + +v +++l+++++++ad  + + G r+ + +     +   w+       Al+++v+se + + ++     + G  
      EHT99370.1 121 QAPGVTLRCPARVTNVNRTQAHV-KVTLDNDEQLDADVLVAADGTRSAVAAAC-GIQ---WQTETYQQLALIANVTSEIPHQGRAFERFTEFGPL 210
                     55566655544444444445555.46777777788888888888888877665.222...22222233455555555555554544555556666 PP

                     EEEEETTEEEEEEEE-TTTS........-HHHHHHHHHHHCT--T....TTS-.EEEE---EEES-SEETTEEE-CCCTEE--CCCS-HHHHHHH CS
  Trp_halogenase 260 WkiPLqhrlgnGyvyssaha........dddeAlaellaeldgkl....eaep.rkirfttGrrkqawvknvvalGlasgfvePlestsihliqa 341
                        P++++  + +v++ +          dd++ l el+++++ +l    ++ + +  ++   + + + ++ v  +G+a+  + P+ +++  l  +
      EHT99370.1 211 ALLPMSDNRLS-LVWCHSLDkrpqlerwDDETFLSELQHAFGWRLgkftHTGKrDIYPLALQQAEPVVSHRVATVGNAAQTLHPIAGQGFNLGLR 304
                     66666666665.55555544445555556666666666655543211112222122334444456666667777888888888888888888888 PP

                     HHHHHHHT--BTT--HH CS
  Trp_halogenase 342 alrrLlallpdksdepa 358
                     ++++L+++l++ + ++ 
      EHT99370.1 305 DVMSLAETLATAHRQQQ 321
                     88888888888777665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0012         2       2      40 ..       5      40 ..       4      52 .. 0.87
   2 !   11.6   0.2   0.00013      0.21     107     154 ..     115     163 ..     108     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagr 40
                   i G+G++G++++ ++ +    +  l +tl++ sep   r
     EHT99370.1  5 IAGGGMTGATLALAISHLT--QGALPVTLIESSEPA-SR 40
                   89****************6..***********9886.33 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
  NAD_binding_9 107 llarlpegvtvev.hraevvdleeradgqavlladgaslaadaVvLAlG 154
                    l a+l++   v++ + a+v+++++++++++v+l+++++l+ad +v A G
     EHT99370.1 115 LFAQLKQAPGVTLrCPARVTNVNRTQAHVKVTLDNDEQLDADVLVAADG 163
                    44455443344441599****************************9988 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     4e-07   0.00065     124     209 ..     273     358 ..     246     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4e-07
          SE 124 asknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyslfaads 209
                 a+   ++ +  +G+a    HP+ g G   +l+D++ l+++l   +  +++     +++++  +R++  a+   L++ l +lfa  +
  EHT99370.1 273 AEPVVSHRVATVGNAAQTLHPIAGQGFNLGLRDVMSLAETLATAHRQQQDPGSYAVMQHYRQRRQQDRATTIGLTDDLVRLFANRH 358
                 555566778899******************************99666666666778888888888888888889*******99766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0014       2.2       2      32 ..       3      36 ..       2      65 .. 0.84
   2 ?    3.9   0.0     0.048        79      41      78 ..     110     147 ..     102     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0014
                EEEECSSHHHHHHHHHHHHTT...SEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg...kkVtvversd 32
                v++ GgG +g  lA a+++l      Vt++e s+
  EHT99370.1  3 VLIAGGGMTGATLALAISHLTqgaLPVTLIESSE 36
                89***************99885556999999876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  41 easkilqeklekn.gievllntkveeiegsedgvesvkl 78 
                 +++++l  +l++  g++++  ++v++++ ++  v+ v+l
  EHT99370.1 110 DVGQRLFAQLKQApGVTLRCPARVTNVNRTQAHVK-VTL 147
                 57788999999999**************9998754.776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.48   7.8e+02       2      33 ..       2      36 ..       1      40 [. 0.72
   2 ?   11.4   0.0   5.6e-05     0.091     115     167 ..     115     167 ..     109     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.48
                 SEEEE--SHHHHHHHHHH...HHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa...akrgkrVlllekak 33
                 +v++ GgG  G   A+++    +    V+l+e+ +
   EHT99370.1  2 TVLIAGGGMTGATLALAIshlTQGALPVTLIESSE 36
                 68999999999877766633456667889998765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.6e-05
                  HHHHHHH.HT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 115 llkelke.agvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  l ++lk+  gv+lr   +v++v++++ + ++v+++++e+l ad lv A G  S+
   EHT99370.1 115 LFAQLKQaPGVTLRCPARVTNVNRTQAH-VKVTLDNDEQLDADVLVAADGTRSA 167
                  5555554279************997777.9********************9996 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.27      43      92 ..     106     152 ..      74     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                 T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTEEEEEEE.EEECHH CS
        PilZ  43 deelalgdrvelklpldkdqelslpgrVvrvkpeedgerlGveF.ldldee 92 
                  e +++g+r++ +l++ ++ +l++p+rV +v++     + +v+  ld de+
  EHT99370.1 106 VELFDVGQRLFAQLKQAPGVTLRCPARVTNVNRT----QAHVKVtLDNDEQ 152
                 5789******************************....6778855555555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0019       3.1       1      28 [.       5      35 ..       5      48 .. 0.83
   2 ?    1.4   0.0      0.24   3.9e+02       4      55 ..      87     137 ..      87     148 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0019
                   EE--SHHHHHHHHHHHCC..TE.EEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gf.dvlllekr 28
                   I G+G++G+++A +++    g+  v+l+e++
     EHT99370.1  5 IAGGGMTGATLALAISHLtqGAlPVTLIESS 35
                   67************99744455489999976 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.24
                    -SHHHHHHHHHHHCC.TEEEEEE-SSSSSSGGG-EECETTCEECTS---EEET CS
  NAD_binding_8   4 aGlsGlvaAylLaka.gfdvlllekrdrlGGraasyevpgvrvdygahifhgs 55 
                    aG+ +l+a  ++  a g  v+l++ ++rl  +++ +  pgv++ ++a++ +  
     EHT99370.1  87 AGFVSLTASDYAIPAlGQVVELFDVGQRLFAQLKQA--PGVTLRCPARVTNVN 137
                    677777777554444488999999999997766544..777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2663.99
//
Query:       EHT99371.1  [L=440]
Description: proline aminopeptidase P II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-65  219.4   0.1      5e-65  219.1   0.1    1.1  1  Peptidase_M24  Metallopeptidase family M24
    4.9e-36  123.2   0.0    9.2e-36  122.3   0.0    1.4  1  AMP_N          Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.1   5.6e-69     5e-65       3     209 .]     183     413 ..     181     413 .. 0.93

  Alignments for each domain:
  == domain 1  score: 219.1 bits;  conditional E-value: 5.6e-69
                    HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE.E CS
  Peptidase_M24   3 irkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv.l 97 
                    +r+a++i++ a++++++a++pg  e+ l+ ei+++ + rhgar ++++ iv+sgen+++lhyt n+ +l++gdlvlidag+e++gya+DitrT+ +
     EHT99371.1 183 LRRAGEISALAHTRAMQACRPGLYEYHLEGEIHHE-FNRHGARFPSYNIIVGSGENGCILHYTENECELRDGDLVLIDAGCEWQGYAGDITRTFpV 277
                    8********************************88.9*********************************************************99 PP

                    CSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB...................CCGBSSCSEEEESSSSSEEEEEESSSTTC CS
  Peptidase_M24  98 vGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl...................akffphglGHgvGlevhdegpsvsresnd 174
                    +Gkf+p+qr +y++vl+ +e+a++  +pGv+++e+++ +  ++ + gl                   +kff hgl H++Gl+vhd+  ++ + +++
     EHT99371.1 278 NGKFSPAQRAVYNIVLKSLETALSRFRPGVSIREVNDEVVHIMVT-GLvelgvlqgevdaliaedahRKFFMHGLSHWLGLDVHDV-GHYGT-PSR 370
                    99******************************************9.445556699999***************************9.55553.678 PP

                    SSB--TTBEEEEEEEEEEETTT.......E.EEEEBEEEEEES CS
  Peptidase_M24 175 grkleeGmvftiEpgiyfapge.......g.gvriedtvlvte 209
                    +r le+Gmv+tiEpg+y ap+        g g+ried++++te
     EHT99371.1 371 DRILEPGMVITIEPGLYIAPDAdvpveyrGiGIRIEDDIVITE 413
                    *****************77855556666777***********7 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0     1e-39   9.2e-36       1     123 []       7     127 ..       7     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 1e-39
                 HHHHHHHHHHHS-SSEEEEEE-----EEETTEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHHHT-S CS
       AMP_N   1 yaerRkrllealpensvvilaagkekyrsgdveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakelfgvd 99 
                 +++rR++ll+++ ++s+++++a++e +rs+d eypFrqnsdF+Y+tGfnep+a lvl k +d+++++s+Lf + +d  +e+W G+rlg e+a +++gvd
  EHT99371.1   7 FQQRRQALLAKMVPGSAALIFAAPEVTRSNDSEYPFRQNSDFWYFTGFNEPEALLVLIK-SDENHNHSVLFNRVRDLTAEIWFGRRLGQEAAPAKLGVD 104
                 79**********99*******************************************75.3345569******************************** PP

                 EEEEGGGHHHHHHHHHTT-SE.EE CS
       AMP_N 100 eaepidelesalakllkgsdktvy 123
                 +a p +++ ++l+ ll+g d+ vy
  EHT99371.1 105 RALPWNDIGEQLHLLLNGLDE-VY 127
                 **************9999886.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3173.84
//
Query:       EHT99372.1  [L=192]
Description: uncharacterized UPF0149 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-37  129.8   2.5    1.4e-37  129.6   2.5    1.0  1  UPF0149   Uncharacterised protein family (UPF0149)
  ------ inclusion threshold ------
       0.23   11.1   0.0       0.61    9.8   0.0    1.7  2  DUF4042   Domain of unknown function (DUF4042)


Domain annotation for each model (and alignments):
>> UPF0149  Uncharacterised protein family (UPF0149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   2.5   1.6e-41   1.4e-37       2     173 ..      12     177 ..      11     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 1.6e-41
                 HHHHHHHHCT-SS-H...HHHHHHHHHHHHCT.HHHCCCHHHHCCCC.......STCHHH....HHHHHHHHHHHHHHHCTTTTS------.....S-H CS
     UPF0149   2 eLdelLasaelpesaldlaelhGfltgllcgpellppeeWlpallgeapafsdeeegeal....lallkrlyneiaaqLadedefefelll.....edl 91 
                 +L+++L ++++  ++   ae+hG+l g+lcg+   ++ +W  ++++ a      +eg+a+    ++ l+ l++ i ++L++ d f f+l+l       +
  EHT99372.1  12 ALAAALSQHGVGMTP---AEMHGLLSGILCGG--NQDTSWKTLVHDLA------NEGMAFshtlAQPLQDLHANITTALEE-DGFLFQLMLpddddITV 98 
                 6999***********...**************..68***********9......******999999999************.9***********99899 PP

                 HHHHHHHHHHHHHHHHHHHHCTTT.GGG-SSHHHHHHHHHHHHHCT---TTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHH- CS
     UPF0149  92 adraeplaeWceGFlqGlglagddWlkdasseelaelLedlaalarleiaeeeeedeedeealeelieavpvavlllyeela 173
                 +dra++la W+++Fl Glg+++++ l++++ +e++e+++dl  +a+l++ +e+e++ee e++lee+ie+v+va+ll+++ + 
  EHT99372.1  99 FDRADALAGWVNHFLLGLGVTQPK-LDKVT-GETGEAIDDLRTIAQLGY-DEDEDQEELEQSLEEVIEYVRVAALLCHDTFT 177
                 ************************.76667.*****************7.****************************9885 PP

>> DUF4042  Domain of unknown function (DUF4042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.8e-05      0.61      89     113 ..      58      82 ..      45      90 .. 0.88
   2 ?   -2.0   0.0      0.27   2.5e+03       2      15 ..     165     178 ..     159     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.8e-05
     DUF4042  89 tpfsvsLasiimelhrglllaleae 113
                 ++fs +La+ ++ lh ++++ale++
  EHT99372.1  58 MAFSHTLAQPLQDLHANITTALEED 82 
                 79********************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.27
     DUF4042   2 vRiaalqllqalvk 15 
                 vR+aal +  + ++
  EHT99372.1 165 VRVAALLCHDTFTR 178
                 89999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1444.44
//
Query:       EHT99373.1  [L=109]
Description: protein that localizes to the cytokinetic ring [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-20   72.0   1.6    5.2e-20   71.7   1.6    1.1  1  ZapA             Cell division protein ZapA
     0.0055   16.0   0.2     0.0068   15.7   0.2    1.2  1  Closter_coat     Closterovirus coat protein
  ------ inclusion threshold ------
       0.04   14.2   0.7      0.066   13.5   0.5    1.4  2  EccE             Putative type VII ESX secretion system trans
      0.051   12.8   0.4       0.06   12.6   0.4    1.0  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
      0.066   13.0   3.0       0.13   12.0   3.0    1.5  1  SPACA9           Sperm acrosome-associated protein 9
        0.3   10.4   5.3       0.37   10.2   5.3    1.0  1  DUF3482          Domain of unknown function (DUF3482)
       0.54   10.7   4.9        1.1    9.7   0.7    2.0  2  DUF3280          Protein of unknown function (DUF2380)


Domain annotation for each model (and alignments):
>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   1.6     2e-23   5.2e-20       1      88 []       6      90 ..       6      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 2e-23
        ZapA  1 vtvtIlgreytlaceegeeeylreaaklvdekikeireaggnlseerllvmaaLnladellklkkraeeleaeleelaerleelaerl 88
                v+++I gr+ +++c+++++++l +aa+ +++++++++ ++++ ++e+l  +aaLn+++el ++k++ ++  a +e   +r++ l++ +
  EHT99373.1  6 VDLQIFGRSLRVNCPPEQQDALNAAAEDLNQRLQDLKVRTRVTNTEQLVFIAALNICHELAQEKNKTRDYAANME---QRIRMLQQTI 90
                899*******************************************************************99888...******9976 PP

>> Closter_coat  Closterovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   2.7e-06    0.0068      81     130 ..      53     102 ..      26     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
  Closter_coat  81 adlfnvvkslkklrnkpNalRkfartfeeeylslaragkkllpegkraak 130
                    +++  ++ + +l + +N+ R +a+ +e+ +  l ++  ++l+e  r+++
    EHT99373.1  53 LVFIAALNICHELAQEKNKTRDYAANMEQRIRMLQQTIEQALVEQGRITD 102
                   4678999*****************************99999998888765 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   2.6e-05     0.066      28      78 ..      19      69 ..      12      89 .. 0.78
   2 ?   -1.5   0.0       1.3   3.3e+03      37      47 ..      77      85 ..      66     102 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
        EccE 28 gtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaapa 78
                + + ++ a+ aaa+ l ++L++  +r+rv++ e+l   +a   +++ a++ 
  EHT99373.1 19 CPPEQQDALNAAAEDLNQRLQDLKVRTRVTNTEQLVFIAALNICHELAQEK 69
                5678999***************************98777776666554444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
        EccE 37 aaaarRlakaL 47
                a +++R+   +
  EHT99373.1 77 ANMEQRIR--M 85
                44444442..2 PP

>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   2.3e-05      0.06     158     223 ..      38     102 ..      21     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                      ..-SS----HHHHHHHHHHHHHHHHHHHHHHTTS..-.-HHHHHHHHHHHHHHHHHHB.-TTS-BTT CS
  Bac_rhamnosid6H 158 ardgaaktekalvataylvrslklvakiaellgkeed.akkyaalaeelkaafnkkyldsetgsvan 223
                       +d + +t ++ +++ +++ +l++ +++a+  +k+ d a++ +++ + l++ ++++++  e+g++++
       EHT99373.1  38 LQDLKVRTRVTNTEQLVFIAALNICHELAQEKNKTRDyAANMEQRIRMLQQTIEQALV--EQGRITD 102
                      368999*******************************999999999************..6676654 PP

>> SPACA9  Sperm acrosome-associated protein 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.0     5e-05      0.13       2      50 ..      33      88 ..      32     104 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
      SPACA9  2 evkqqlkklelryklfkqqqktfisALeraresaldktepvst.......ikqvqk 50
                +++q l+ l+ r ++ +  q +fi+AL+ + e a++k +           i+ +q+
  EHT99373.1 33 DLNQRLQDLKVRTRVTNTEQLVFIAALNICHELAQEKNKTRDYaanmeqrIRMLQQ 88
                78999*************************99997765443322344444444444 PP

>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.3   0.00014      0.37      38     112 ..      22      96 ..      18     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
     DUF3482  38 ekreaLqrliealeeqrqarreeaaeliaelLidvaayreeadeeaeeaakekllerlqekvRqrEqkcveaLlk 112
                 e+++aL+++ e+l+++ q+++ ++    +e+L+ +aa+   ++ ++e++++++ ++++++ +R   q++ +aL +
  EHT99373.1  22 EQQDALNAAAEDLNQRLQDLKVRTRVTNTEQLVFIAALNICHELAQEKNKTRDYAANMEQRIRMLQQTIEQALVE 96 
                 7899***********************************998999999999*****************9999965 PP

>> DUF3280  Protein of unknown function (DUF2380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5      0.03        78      21      53 ..      20      52 ..       5      68 .. 0.71
   2 ?    9.7   0.7   0.00042       1.1       9      45 ..      64     100 ..      56     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.03
     DUF3280 21 taeearRlaavteqlreaLaesgryevvdlapa 53
                 +e++  l+a++e+l+++L++ +  + v+++++
  EHT99373.1 20 PPEQQDALNAAAEDLNQRLQDLKVRTRVTNTEQ 52
                68999999***********99886666655554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00042
     DUF3280   9 eliDtsaepadqtaeearRlaavteqlreaLaesgry 45 
                 el  ++++++d  a+ ++R++++++ +++aL e+gr+
  EHT99373.1  64 ELAQEKNKTRDYAANMEQRIRMLQQTIEQALVEQGRI 100
                 6778888888889**********************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 894.18
//
Query:       EHT99374.1  [L=198]
Description: putative ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-47  162.0   0.0    1.5e-47  161.9   0.0    1.0  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   8.4e-52   1.5e-47       1     187 []       9     190 ..       9     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 8.4e-52
                     HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----TTS---HHHHHHHHHTTEEEEEEEECSSCTEECEEEEEECCCCCCC CS
  5-FTHF_cyc-lig   1 KqelRkqllaalralseeevaaesealsqrieslkesqeakrvalyvsvkgeidtkelikklleegkevllPrvrlesgslkvvrlttlkeedsl 95 
                     +q++R+ +++ +ral+ e+++  +e+l ++++++  +++a++val++sv+gei+t++li kl++++k+v+lP++++ s     + + ++++e+ l
      EHT99374.1   9 RQDIRQHVRHLRRALTPEQQHTAAEQLAEHAINFAPVSDAQNVALFLSVDGEINTRPLIAKLWQQNKRVYLPVLHPFS--AGHLLFLRYTPETPL 101
                     589***************************************************************************..77788889******* PP

                     CCHCTSSCE--TTECCBCGGGG-SEEEE--SEEETTS-EE-SSTTHHHHHHHHHTST-SS--EEEEE--GGGEES-----ST----SEEE-S CS
  5-FTHF_cyc-lig  96 esgkyglkePeeeeerelalekldlvlvPgvAfdkeGaRlGkGkGyyDrflarlkggagdkpltvglaldeqlverlPleehDvpvdevvte 187
                       +k  ++eP+  ++    l+++d+++vP vAfd+ G RlG+G+G+yDr+l+++k+   +  l+vg+a d+qlv++lP+ ++D+p+ +v+t+
      EHT99374.1 102 SPNKLRIPEPPLDIRHMVTLDEMDVMMVPLVAFDRSGQRLGMGGGFYDRTLQNWKQ---HAFLPVGIAHDCQLVDSLPVAAWDIPLPAVLTP 190
                     ********************************************************...99*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1602.13
//
Query:       EHT99375.1  [L=412]
Description: D-3-phosphoglycerate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-52  176.6   0.0    4.6e-52  176.0   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    1.2e-36  125.3   0.0    1.6e-36  124.9   0.0    1.1  1  2-Hacid_dh      D-isomer specific 2-hydroxyacid dehydrogenase
    2.3e-06   27.8   0.3    3.2e-05   24.2   0.1    2.3  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      1e-05   25.2   0.0    2.6e-05   23.9   0.0    1.7  1  ACT             ACT domain
     0.0054   16.0   0.3      0.071   12.4   0.3    2.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0066   16.5   0.0      0.012   15.7   0.0    1.4  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
  ------ inclusion threshold ------
      0.019   15.6   0.0      0.047   14.3   0.0    1.6  1  ACT_4           ACT domain
      0.071   11.8   0.0       0.11   11.2   0.0    1.3  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
       0.12   12.9   0.1       0.82   10.2   0.0    2.3  2  XdhC_C          XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.0   2.3e-55   4.6e-52       2     178 .]     118     294 ..     117     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 2.3e-55
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   + +l +lr ++ea+++ ++g w ++ a  + e +gk++GiiG+G+IG ++  +++++gm+v++yd  +k      +   ++ sl +ll+ sD+vslh
    EHT99375.1 118 GEMLLMLRGVPEANAKAHRGVW-NKIAKGSFEARGKKLGIIGYGHIGMQLGVLAEGLGMHVYFYDIENKLPL--GN-ASQVRSLTQLLNMSDVVSLH 210
                   67999*****************.99999999************************************88544..22.33678*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC....HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped....spllelpnviltPHia 178
                   +p t++t+++i+a+ela+mk+ga+liN++RG++vd  aL++aL s++++gaa+Dvf  ep++++    spl e++nviltPHi+
    EHT99375.1 211 VPETASTQNMISADELAQMKPGALLINASRGTVVDIPALCDALASKQVGGAAIDVFPVEPATNSdpfvSPLSEFDNVILTPHIG 294
                   **************************************************************99444446699*********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   8.1e-40   1.6e-36       2     134 .]      14     326 ..      13     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 8.1e-40
                 EEEST.CHHHHHHHHHTTE.EEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellkeegv.evevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 l++e +++++l+ l+++g+ ++e+++ +l++e l++ ++da+++ +rs++++t+e+++a++kL  ++++++G+++vDl+aa++rGi V+n+p ++t+sv
  EHT99375.1  14 LLVEGVHQSALDNLRAAGYtNIEFHKgALDSESLKASIRDAHFIGIRSRSQLTEEIFAAAEKLVAVGCFCIGTNQVDLNAAAKRGIPVFNAPFSNTRSV 112
                 788999**********9********************************************************************************** PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                 AEl+                                                                                               
  EHT99375.1 113 AELVigemllmlrgvpeanakahrgvwnkiakgsfeargkklgiigyghigmqlgvlaeglgmhvyfydienklplgnasqvrsltqllnmsdvvslhv 211
                 *************************************************************************************************** PP

                 ...................................................................................T-BHHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...................................................................................aaTeeaqeniaeeaae 118
                                                                                                    ++Teeaqeni+ e+a 
  EHT99375.1 212 petastqnmisadelaqmkpgallinasrgtvvdipalcdalaskqvggaaidvfpvepatnsdpfvsplsefdnviltphigGSTEEAQENIGIEVAG 310
                 *************************************************************************************************** PP

                 HHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 119 nlvaflkgespanavn 134
                 +l ++ +++s+ +avn
  EHT99375.1 311 KLAKYSDNGSTLSAVN 326
                 **************98 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15     3e+02     102     151 ..      92     144 ..      42     151 .. 0.77
   2 !   24.2   0.1   1.6e-08   3.2e-05       1     108 [.     153     257 ..     153     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
                    HHHHHTT-EEEEEEEESHHHHHH..HT-EEEEEEE-HHHH.HHHHHHHHHHEE CS
  NAD_binding_2 102 kelkekglkfldaPVSGGeegAe..kGtLsimvGGseeaf.ervkpvleaiga 151
                    ++++++g+ +++aP S +   Ae   G++ +m+ G  ea  ++ + v ++i++
     EHT99375.1  92 NAAAKRGIPVFNAPFSNTRSVAElvIGEMLLMLRGVPEANaKAHRGVWNKIAK 144
                    6789999*********9988887335888888877666540455567777776 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.6e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    k+g+iG G +G+++    +  g++v++y+ +    ++l   +a+ + s+ +l++  dvv + v++++ ++++i+   l+++k+g++li+ s   + 
     EHT99375.1 153 KLGIIGYGHIGMQLGVLAEGLGMHVYFYDIE----NKLPLGNASQVRSLTQLLNMSDVVSLHVPETASTQNMISAdELAQMKPGALLINASRGTVV 244
                    68***************************99....67777889999***************************9997888**********998888 PP

                    HHHHHHHHHHHTT CS
  NAD_binding_2  96 dtrelakelkekg 108
                    d   l ++l++k+
     EHT99375.1 245 DIPALCDALASKQ 257
                    8887777777765 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-08   2.6e-05       8      66 ..     347     403 ..     342     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
                 ESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   8 pDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66 
                 ++rPG+L ++ +++a+ giNi+     +s     g+v++ i +++e +e++l+  k+++
  EHT99375.1 347 ENRPGVLTAINQIFAEQGINIAAQYLQTSPM--MGYVVIDIDAEHELAEKALQLMKAIP 403
                 7********************9877777766..68999999999999999998888876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   3.5e-05     0.071      21     125 ..     145     236 ..     130     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.5e-05
                  CEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS.---SC-HHHHHT CS
  AlaDh_PNT_C  21 GgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkk.aPkLvteemvks 117
                  G  + ++  k  +iG G  G+q    a glg +V+ +D++ +       lg+       sq ++l++ ++ +dvv  + ++p  + + ++++++ +++
   EHT99375.1 145 GSFE-ARGKKLGIIGYGHIGMQLGVLAEGLGMHVYFYDIENKLP-----LGNA------SQVRSLTQLLNMSDVV--SLHVPETAsTQNMISADELAQ 228
                  5555.55667889*************************986542.....4444......78899999******98..788887651556********* PP

                  S-TTEEEE CS
  AlaDh_PNT_C 118 MkpgsViv 125
                  Mkpg+ ++
   EHT99375.1 229 MKPGALLI 236
                  ****9988 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.2e-06     0.012      23     110 ..     151     239 ..     142     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.2e-06
                    TSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-S.SSSSSB-HHHHCCS-TTEEEEE-S CS
  AdoHcyase_NAD  23 GkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvttt.GnkdiitlehlkkmkddaivcniG 110
                    Gk+  ++GyG +G       +glG +v+  +++    l  a +  ++++l ++ + +++ v  t  ++++i++++l++mk  a++ n  
     EHT99375.1 151 GKKLGIIGYGHIGMQLGVLAEGLGMHVYFYDIENKLPLGNASQVRSLTQLLNMSDVVSLHVPETaSTQNMISADELAQMKPGALLINAS 239
                    99999****************************999999999888888888888888888865516799**************999965 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.4e-05     0.047      12      55 ..     345     388 ..     340     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
       ACT_4  12 eaedrkglLaditqviseekanivsvnaktrkkdglaeikitve 55 
                 + e+r+g+L+ i q+++e+++ni +  ++t    g++ i+i+ e
  EHT99375.1 345 IHENRPGVLTAINQIFAEQGINIAAQYLQTSPMMGYVVIDIDAE 388
                 569***************************87699999998765 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.6e-05      0.11     213     299 ..      94     178 ..      55     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.6e-05
                     HHHH---EEEEE-SSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEE CS
  Oxidored_nitro 213 eekfgvpyiklvspiGleatdaflrelakllgkevaperiaeerarlldaladyheylagkrvaiygdpdrvvalarllkelGmevv 299
                     ++k g+p+++   +   +++++++   + l+ + v pe  a++++ ++ ++a+  +  +gk+  i+g++++ ++l  l + lGm+v 
      EHT99375.1  94 AAKRGIPVFN-APFSNTRSVAELVIGEMLLMLRGV-PEANAKAHRGVWNKIAKGSFEARGKKLGIIGYGHIGMQLGVLAEGLGMHVY 178
                     5677888888.777777777777755555555777.9999999999**************************************996 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.96   1.9e+03      49      74 ..      35      59 ..      15      79 .. 0.75
   2 ?   10.2   0.0   0.00041      0.82       2      65 ..     155     253 ..     154     263 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.96
                E--S-HHHHHHHHHHHSSS--SEEEE CS
      XdhC_C 49 vlthdhklDaealeaalrkkaayigl 74
                +  h+ +lD e l+a + ++a++ig+
  EHT99375.1 35 IEFHKGALDSESLKASI-RDAHFIGI 59
                55788999999999999.56778875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00041
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG............................-GGG-TT-SE...............-EEEE--S-HHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa............................tkerfpeade...............tavvvlthdhklD 57 
                  i+G gh++ +l  la+ lg++v+ +d ++++                             +        +               + ++ ++++   D
  EHT99375.1 155 GIIGYGHIGMQLGVLAEGLGMHVYFYDIENKLPlgnasqvrsltqllnmsdvvslhvpetaS--------TqnmisadelaqmkpgALLINASRGTVVD 245
                 69*************************99876566666666555555555555554444442........03333333366666666666667777777 PP

                 HHHHHHHS CS
      XdhC_C  58 aealeaal 65 
                  +al  al
  EHT99375.1 246 IPALCDAL 253
                 77777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3219.71
//
Query:       EHT99376.1  [L=219]
Description: ribose 5-phosphate isomerase, constitutive [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-59  200.0   0.1    2.6e-59  199.7   0.1    1.1  1  Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoribois
     0.0011   18.9   0.2     0.0059   16.6   0.0    2.1  2  DeoRC           DeoR C terminal sensor domain


Domain annotation for each model (and alignments):
>> Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7   0.1   2.9e-63   2.6e-59       2     173 .]      49     213 ..      48     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 199.7 bits;  conditional E-value: 2.9e-63
                     EEESSHHHHHHHHHTT--BE-GGCCSSEEEEEE--SEEETTS-EE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSTTSS-EEEEE-GGGHHHH CS
  Rib_5-P_isom_A   2 gvptSeqteelaeelgipllsldeveeidlaiDGaDevdedlnliKGgGgallrEKivaaaakkfiviadesKlveklgkfpvPveVlpfaleav 96 
                     +v++Se++++++++lgi++ +l+e++++ +++DGaDe+++++++iKGgG+al+rEKivaa+akkfi+iad sK v+ lg+fp+PveV+p+a+++v
      EHT99376.1  49 AVSSSEASTQKLKSLGIQVFDLNEIDDLAIYVDGADEINPQMQMIKGGGAALTREKIVAAVAKKFICIADASKEVDVLGRFPLPVEVIPMARSYV 143
                     69********************************************************************************************* PP

                     HHHHHHTTT-EEEE-TETTTTEE-B-TTS-EEEEEESSSBSSSHHHHHHHHHTSTTEEEESEE-S.--SEEEEEETTC CS
  Rib_5-P_isom_A  97 arelekllggkpelReakgkdgpvvTdngnlilDvkfeekiedpeelekelksipGVvetGlFlg.ladkvlvgkedg 173
                     arel + lgg pe+R+  +    vvTdngn+ilDv+  +++ dp elek+++++pGVv++GlF+   ad +l+g++dg
      EHT99376.1 144 ARELVR-LGGLPEYRQ--N----VVTDNGNIILDVHNLRIL-DPIELEKTINALPGVVTVGLFATrGADVALIGGPDG 213
                     *****7.5*******7..5....**************8777.**********************769*******9987 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.5e-07    0.0059       3      41 ..       4      42 ..       2      62 .. 0.91
   2 ?   -0.4   0.0      0.11   9.5e+02     120     138 ..     103     121 ..      77     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.5e-07
       DeoRC  3 aeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaek 41
                 e K+ ++ aA++++++g ++ +++G+T++++++aL + 
  EHT99376.1  4 DELKKVVGWAALDYVQPGTIVGVGTGSTAAHFIDALGSI 42
                577999*****************************9765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
       DeoRC 120 kralieaarrvillaDssK 138
                 ++ +++ a++ i +aD sK
  EHT99376.1 103 EKIVAAVAKKFICIADASK 121
                 5667788899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1678.94
//
Query:       EHT99377.1  [L=300]
Description: DNA-binding transcriptional activator, replication initiation inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-19   69.6   0.2    7.1e-19   67.5   0.1    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    1.4e-15   57.2   3.4    2.5e-15   56.4   3.4    1.3  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.035   13.9   0.0    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.1   1.2e-22   7.1e-19       2      60 .]       7      64 ..       6      64 .. 0.97
   2 ?   -1.6   0.0      0.46   2.7e+03       5      15 ..     225     235 ..     222     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.2e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                r l++++av +e+ f rAA++L ++q+avs++ik+LE+++g+pL++R +   r+Te+G+
  EHT99377.1  7 RTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVR-TVPPRPTEQGQ 64
                679********************************************.889*******7 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.46
                 HHHHHHHHHSS CS
       HTH_1   5 rlfvavaeegs 15 
                 ++fv+ a++gs
  EHT99377.1 225 EAFVQMARQGS 235
                 79********9 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   3.4   4.2e-19   2.5e-15       8     206 ..      93     288 ..      87     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4.2e-19
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG...SSSECGG CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar...gepvsle 99 
                     L++++  +  +++l p+l++ +a  P v+l+l+++d ++  ++l++ge+  a+  +p++ ++  +++L+   ++ vas+d   a+      v+ +
      EHT99377.1  93 LSLAVNADSLATWLLPALKDVLADSP-VRLNLQVEDETRTQERLRRGEVVGAVSIQPQPLPSCLVDQLGALDYLFVASRDF--AErffPNGVTRS 184
                     7889999999**************99.9****************************************************5..5559*99***** PP

                     GGCTSEEEEESTTSTHHHHHHHHHHCTTEEC....EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETT CS
  LysR_substrate 100 dLadeplilleegsglrdlledalreaglkp....rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkg 190
                     +L + p + +++   ++++++    ++++++     + + vns ea ++++++G   +++p++ +++ela+g+l+  +l +  l ++  l++++ 
      EHT99377.1 185 ALLKAPAVAFDHLDDMHQAFL----QQNFDLspgsVPCHIVNSSEAFVQMARQGSTCCMIPHLQIERELASGELI--DLTP-GLYQRRMLYWHRF 272
                     *********876666555555....44333333668899************************************..8888.89*999******* PP

                     CCCHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflre 206
                      + s+++r++ d+l +
      EHT99377.1 273 APESRLMRRVTDALIA 288
                     ***********99976 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.9e-06     0.035       3      44 ..      10      50 ..       8      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
                .HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  3 eTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                + L+a +++ +  +++A++L +    +++R++++e l+g +l
  EHT99377.1 10 QALDAVIRE-RGFERAAQKLCITQSAVSQRIKQLENLFGQPL 50
                566677765.77899************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2679.10
//
Query:       EHT99378.1  [L=243]
Description: uncharacterized DUF541 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-45  153.5   9.7    1.1e-44  153.3   9.7    1.0  1  SIMPL     Protein of unknown function (DUF541)
  ------ inclusion threshold ------
       0.12   12.4   2.4       0.94    9.6   2.4    2.1  1  Mod_r     Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> SIMPL  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   9.7   1.2e-48   1.1e-44       3     200 .]      34     235 ..      32     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.3 bits;  conditional E-value: 1.2e-48
       SIMPL   3 VtGsaevevapDqatltlsvesegkdaaeakaevaekmnavlealkklgikekdiqtsslslkpeysy.engknkitgyeasqsltvkfrdldklgevl 100
                  +G+a+v + pD+atl++ v +++kdaaeak++v+ ++++  ++l+k+gi++kdi+ ++l+++pey+y ++gk +++gy+a ++++v++r+ldkl+e+l
  EHT99378.1  34 TSGKATVDARPDIATLSIVVNVSSKDAAEAKKQVDSRVAQYFDFLQKNGIEKKDIEAANLTTQPEYDYtKDGKSQLKGYRAVRQVQVTVRQLDKLNELL 132
                 69********************************************99*************************************************** PP

       SIMPL 101 daavka.aneingvsfslsdedelrdeareeAvkdArakAealAkalgvklgkvvsisesgsnpyappapamaaaaaa..aasaatpfepgeievtasV 196
                 d a+k+  ne+++v++++++++ ++++a+++A+k+A ++A +lA+ +++klg+++si+++ +n++++p+++m  a+aa  ++sa++ +  + i++  +V
  EHT99378.1 133 DGALKSgLNEVRSVELGVANPERYKQQALKAAIKNATQQATELAEGFNAKLGPIYSIRYQVANYQPMPMNRMFKASAAaaDTSAQETYDQQSINFDDQV 231
                 ***********************************************************555555555555555555555999999999999******* PP

       SIMPL 197 tvvf 200
                  vvf
  EHT99378.1 232 DVVF 235
                 **98 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.4    0.0001      0.94      26     114 ..      69     179 ..      55     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0001
       Mod_r  26 pevkqlkeekeellaeneslaeknlslepele...elrselqekle..elkelekefeekeqeldell.................qkfspdallarLqt 102
                 ++v q+++ +++   e +++  +nl  +pe++   + +s+l+  +   +++   ++++++++ ld +l                 +++ ++al+a  ++
  EHT99378.1  69 SRVAQYFDFLQKNGIEKKDIEAANLTTQPEYDytkDGKSQLKGYRAvrQVQVTVRQLDKLNELLDGALksglnevrsvelgvanpERYKQQALKAAIKN 167
                 457777778888888888888888888885541113344444322222455555566666666666658888888888888888888888888888888 PP

       Mod_r 103 avaeaeeeSeal 114
                 a+++a e++e  
  EHT99378.1 168 ATQQATELAEGF 179
                 888887777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1954.21
//
Query:       EHT99379.1  [L=207]
Description: arginine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-50  169.4  14.6    6.6e-50  169.3  14.6    1.0  1  LysE      LysE type translocator
  ------ inclusion threshold ------
        5.1    7.1  11.7       0.16   11.9   3.9    2.4  2  DUF485    Protein of unknown function, DUF485


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3  14.6   7.4e-54   6.6e-50       2     191 ..      14     201 ..      13     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 7.4e-54
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve..aslvk 98 
                 +l+l++Gpqn++vl+qg+kr   +++++a ++ ++d+vli++g++G ++Ll+++p +l++++++G+a+Llw+g+ alr+a++ +   ++     +s+ +
  EHT99379.1  14 ALILPLGPQNAFVLNQGVKRH--YHLMTATLCSLSDVVLICAGIFGGSALLQQSPLLLTVITWAGVAFLLWYGWGALRTAFRRELALASGLDirQSRGR 110
                 689******************..*************************************************************876666658899*** PP

        LysE  99 pflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavklll 191
                 ++++ l+++++NP+++l++++v+++l++  + +++ +r ++a+g+v+as++wf+ la+laa+l++ l++ +++r in +vg++++++a++l+ 
  EHT99379.1 111 IIATLLAVTWLNPHVYLDTFVVLGSLGS--QFPDTHARQWFALGTVSASVLWFFGLALLAAWLAPLLQTTRAQRLINLLVGAVMWFIAFQLAQ 201
                 ****************************..5999999*****************************************************986 PP

>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.0      0.19   1.7e+03      19      39 ..      74      94 ..      68     129 .. 0.63
   2 ?   11.9   3.9   1.8e-05      0.16      11      64 ..     144     197 ..     143     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.19
      DUF485 19 pltaiflvvYfgfvllvafap 39
                ++ ++fl++Y    l +af +
  EHT99379.1 74 WAGVAFLLWYGWGALRTAFRR 94
                455667777755444445444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.8e-05
      DUF485  11 rkrrrfafpltaiflvvYfgfvllvafapdllatkvgegnitvglllgllqivl 64 
                 ++r++fa+  + + ++++fg+ ll+a+   ll+t  ++  i++ + + +  i++
  EHT99379.1 144 HARQWFALGTVSASVLWFFGLALLAAWLAPLLQTTRAQRLINLLVGAVMWFIAF 197
                 5799******************************99977777655544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1463.08
//
Query:       EHT99380.1  [L=291]
Description: component of the MscS mechanosensitive channel [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-54  185.2   1.3    1.1e-54  185.2   1.3    1.6  2  MS_channel      Mechanosensitive ion channel
    3.7e-12   46.0   4.9    3.7e-12   46.0   4.9    2.3  2  TM_helix        Conserved TM helix
  ------ inclusion threshold ------
        0.2   11.1   0.0       0.28   10.6   0.0    1.1  1  vATP-synt_AC39  ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   2.0      0.93   5.6e+03       2      27 ..      30      55 ..      26      58 .. 0.68
   2 !  185.2   1.3   1.8e-58   1.1e-54       3     206 .]      72     268 ..      70     268 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.93
                .HHHHHHHHHHHHHHHHTTT--SCCH CS
  MS_channel  2 kilkiliivvgilivlsllgvnvsal 27
                +i++ ++i+++ +++  ++   v+ l
  EHT99380.1 30 NIVAAVAIIIVGMVIARVISNAVNRL 55
                46666777777777777777666665 PP

  == domain 2  score: 185.2 bits;  conditional E-value: 1.8e-58
                 HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnssl 101
                 ++++++i+++++++l  +gv++++++avlGa+gla+glal+ ++snl+aG++l++ +pf+ G++v++g++ GtV ++++++t++r+ dg+iv++Pn ++
  EHT99380.1  72 LVRYGVIAFTVIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVTFRPFRTGEFVDLGGVMGTVLNVQIFSTTLRSADGKIVVVPNGKI 170
                 799************************************************************************************************ PP

                 HTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHH CS
  MS_channel 102 vtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkile 200
                 ++ ni+N+sr ++ rr ++ +gv+y++d   +++v+  l+e+++ +++vlkd   +  l+e+g+sslnf vr++ ++   ++ ++v+ ++ ++ k++l+
  EHT99380.1 171 ISGNIINFSR-EPVRRNEFIVGVAYEAD---VDEVIALLREVVEADQRVLKDRGIQIGLNELGASSLNFVVRCWSNS---SDLQDVYWDLLKNFKRALD 262
                 **********.*****************...**********************************************...******************* PP

                 HHT--- CS
  MS_channel 201 eegiei 206
                  +gi i
  EHT99380.1 263 NKGIGI 268
                 ***976 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   4.9   6.3e-16   3.7e-12       2      50 .]      16      64 ..      15      64 .. 0.95
   2 ?   -1.9   0.2      0.57   3.4e+03      17      27 ..      77      87 ..      65      92 .. 0.60

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 6.3e-16
                XXXSXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH CS
    TM_helix  2 plnnllnellsflPnLvgAilILlvGwiiAkfvsrlvtkllaktgiddt 50
                +l  ++  +ls+ +n+v+A++I +vG++iA+++s++v++ll +++id t
  EHT99380.1 16 WLVHNQALILSYAVNIVAAVAIIIVGMVIARVISNAVNRLLIARHIDAT 64
                77788999***************************************86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.57
                HHHHHHHHHHH CS
    TM_helix 17 LvgAilILlvG 27
                ++++ +I+++G
  EHT99380.1 77 VIAFTVIAALG 87
                45566666665 PP

>> vATP-synt_AC39  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.7e-05      0.28      73     161 ..     177     266 ..     173     279 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.7e-05
                     GGS-H...HHHHHHHHHHHHHHHHHHHHHHHHHH..T-..-GGGS-..--.SSSS-HHHH.HHHHHSSSHHHHHHHHHT-HHHHHHHHHHCC... CS
  vATP-synt_AC39  73 eqapgp..srefldyllyrydidNvklllrgklsg.dl..dleeleeklhplgelsaldl.dklieaksveelyeallgtpyakyleealdelee 161
                     +++ +p   +ef+  + y+ d+d v++llr ++   ++  + + ++  l++lg  s + + +  +++++++++y  ll     k +++ald+  +
      EHT99380.1 177 NFSREPvrRNEFIVGVAYEADVDEVIALLREVVEAdQRvlKDRGIQIGLNELGASSLNFVvRCWSNSSDLQDVYWDLL-----KNFKRALDNKGI 266
                     566666545699999******************9633344444455555555644444444667789999**999999.....889888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2229.63
//
Query:       EHT99381.1  [L=359]
Description: fructose-bisphosphate aldolase, class II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-89  297.9   0.0    9.2e-89  297.6   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.6   0.0   5.1e-93   9.2e-89       2     277 ..      17     355 ..      16     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: 297.6 bits;  conditional E-value: 5.1e-93
                    HHHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-..............HHHHHHHHHHHHHHHHT...-EEEEEE CS
  F_bP_aldolase   2 nlkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag..............gaealaelvraaaeaykkasvpvalhl 83 
                    ++++++k Ake+++a++a+n++ +++++avleaa++ ksPvI+q+s+g+aa++ag              ga++ a++v+ +ae+y+   vpv+lh+
     EHT99381.1  17 DVQKIFKVAKENKFALPAVNCVGTDSINAVLEAAAKVKSPVIVQFSNGGAAFIAGkgfktdkpqgaaifGAISGAQHVHLMAEQYG---VPVILHT 109
                    6899***********************************************9988****************************888...******* PP

                    ----G.....HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------....TT-TTTS--HHHHHH CS
  F_bP_aldolase  84 DHgak.....leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv....vaeeklyTdpeeaee 162
                    DH+ak     ++gl++a e+        +fsS+MiD+Se++leeNi+++ ++++r++++++++E+ElG++ggeedgv     ++++lyT+pe++  
     EHT99381.1 110 DHCAKkllpwIDGLLDAGEEhfkktgkpLFSSHMIDLSEESLEENIEISSKYLARMAKIDMTLEIELGCTGGEEDGVdnshMDASALYTQPEDVNY 205
                    **********777777777777777777************************************************9665444455********** PP

                    HHHHHH....-EEEE--SS---SS--SS...--THHHHHHHHHH..........--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHH. CS
  F_bP_aldolase 163 fveetg....vdalAvaiGnvHGvykpk.pkLdferlkeiqkav..........vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkav. 242
                     +e+++     +++A+++GnvHGvykp+  kL + +l++ qk v            +V+HGgsg++  ei++ i++Gv+K+Nidtd+++a+++++ 
     EHT99381.1 206 AYEKLNaispRFTIAASFGNVHGVYKPGnVKLTPTILRDSQKFVcekhglphnaLDFVFHGGSGSSAAEIEESISYGVIKMNIDTDTQWATWDGIl 301
                    ****************************555***************99866644448**************************************6 PP

                    ....HHG...............GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT- CS
  F_bP_aldolase 243 ....kke...............kenkk.ydprkllkeaeeamkevvkekiellgs 277
                        k +               k+nkk ydpr++l++a+++m  +++++++ l++
     EHT99381.1 302 qyykK-NegylqaqlgnpegadKPNKKyYDPRVWLRAAQASMVVRLEQAFKELNA 355
                    66532.2567766666666555599*************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2664.77
//
Query:       EHT99382.1  [L=387]
Description: phosphoglycerate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-131  437.8   0.4   3.7e-131  437.6   0.4    1.0  1  PGK       Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.6   0.4    2e-135  3.7e-131       1     378 []       6     373 ..       6     373 .. 0.95

  Alignments for each domain:
  == domain 1  score: 437.6 bits;  conditional E-value: 2e-135
                 GGGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-EEEEEE--S--TT..S-GGG-SHHHHHHHHHHH.TT-EEEESSTTSHHHHH CS
         PGK   1 vkdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgakvvllsHlgrpkg..ekeklslkpvaerLsell.gkeVkfvedvvgeevee 96 
                 ++dldl+gkrvl+R+D+Nvp+k+ gk+t+d rira+lpTi+++l++gakv+++sHlgrp +   ++++sl pv+++L+e l g++V++++d+++     
  EHT99382.1   6 MTDLDLAGKRVLIRADLNVPVKE-GKVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEgeYNDEFSLLPVVNYLKEKLnGTPVTLAKDYLDG---- 99 
                 689******************86.***********************************775667************9999455*******9999.... PP

                 HHHT-TTT-EEEES-GGGSTTTTTT-HHHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCS.EEEE-HHHHHHHHHHHHHHHS--SSEEEEEEES-HH CS
         PGK  97 aiaelkegevllLeNvrfykeEekndeelakklasladvyVnDAFgtahrahaStvgiakvl.saaaGllmekElealskvlenperplvailGGakvs 194
                    ++ +ge+++LeNvrf+k+E+k+de+lakk+a+l+dv+V+DAFgtahra+aSt+g+ k++  a+aG l+++El+al kv++nperplva++GG+kvs
  EHT99382.1 100 --VDIGAGELVVLENVRFNKGEKKDDEALAKKYAALCDVFVMDAFGTAHRAQASTHGVGKFApVACAGPLLSAELDALGKVMKNPERPLVAVVGGSKVS 196
                 ..35889*******************************************************555********************************** PP

                 HCHHHHHHHTTT-SEEEEETCHHHHHHHHTT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESSSSTTS..EEEECCG--TT-EEEEE-HH CS
         PGK 195 dkikvienLlekvdkliigGgmantFlkaqgleigkslveedklelakellekakkkgvkillpvDvvvakeeaeke.akvveveaipedemalDigpk 292
                 +k +v+++L++ +d++i+gGg+antF++  + ++gksl+e+d +e ak l +++      i +p+D  v +e +e++ a+v++v+++ ++e+++D g++
  EHT99382.1 197 TKFDVLQSLVKIADTVIVGGGIANTFVAI-DNKVGKSLYEPDFVEAAKGLRDQYG-----IPVPTDSRVGTEFSETApATVKKVSEVADNEEIMDFGDE 289
                 **************************976.5699****************99997.....***********97667668999***************** PP

                 HHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCHTSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHHHHCTS CS
         PGK 293 tielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatkgalsivGGgdsaaaveklgladkvshvStGGgAsLelLegk 378
                 t++++a+++k+akt++wnGp+Gvfe+++f+kGT+ + +a+a++  +a+s++GGgd++aa++ +g++dk+s++StGGgA+Le++egk
  EHT99382.1 290 TAQAMATILKNAKTILWNGPVGVFEFPNFRKGTEIVSNAIADS--DAFSVAGGGDTLAAIDLFGIEDKISYISTGGGAFLEFVEGK 373
                 ******************************************8..56**************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2809.20
//
Query:       EHT99383.1  [L=339]
Description: D-erythrose 4-phosphate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-54  181.8   0.1      9e-54  181.3   0.1    1.2  1  Gp_dh_C        Glyceraldehyde 3-phosphate dehydrogenase, C-te
      1e-32  112.5   0.0    3.8e-32  110.6   0.0    1.9  2  Gp_dh_N        Glyceraldehyde 3-phosphate dehydrogenase, NAD 
     0.0058   17.3   0.0      0.029   15.0   0.0    2.0  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.026   14.8   0.0      0.061   13.6   0.0    1.6  1  TrkA_N         TrkA-N domain
      0.026   15.4   0.1      0.056   14.3   0.0    1.7  2  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
      0.085   13.0   0.0       0.27   11.4   0.0    1.9  1  DapB_N         Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.1     3e-57     9e-54       1     158 []     160     316 ..     160     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 3e-57
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 ++p++k l+d+fgi++g++tt+h++++dQ+++D+++ +dlrr+raa+++iip++t  a  +++++p+++ +++++AvrVPt+nv+++dl+v ++++v++
  EHT99383.1 160 IIPVIKLLDDAFGIESGTVTTIHSAMHDQQVIDAYH-SDLRRTRAASQSIIPVDTRLAAGITRIFPKFNDRFEAIAVRVPTINVTAIDLSVSVRQPVKA 257
                 589******************************997.9************************************************************* PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                  evna+l  aaega++gi++yte +lvs D+++dphs+i+d ++t+v+ ++l+k++ w+
  EHT99383.1 258 CEVNALLLSAAEGAFRGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGQHLIKTLVWC 316
                 **********************************************************7 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   1.3e-35   3.8e-32       1      99 [.       3     104 ..       3     106 .. 0.96
   2 ?   -1.4   0.0         1     3e+03      55      85 ..     287     317 ..     248     324 .. 0.72

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 1.3e-35
                 CEEEEESTSHHHHHHHHHHH...HHTTCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SS CS
     Gp_dh_N   1 vkvainGfGRIGrlvlrall...eekelevvaindltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestG 96 
                 ++vainGfGRIGr+vlral+   ++ e++vvain+l++++ +a+llkyD+ hgrf  +v++e + l v++++i++l+++  ++lpw+el+vd+V+++tG
  EHT99383.1   3 IRVAINGFGRIGRNVLRALYetgRRAEITVVAINELAEAAGMAHLLKYDTSHGRFALDVRQERDLLWVGEDTIRILHHAGLDALPWRELNVDVVLDCTG 101
                 69******************987777************************************************************************* PP

                 S-- CS
     Gp_dh_N  97 vft 99 
                 v+ 
  EHT99383.1 102 VYG 104
                 986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
                 -EEEETTEEEETTEEEEEE--SSGGGS-CHH CS
     Gp_dh_N  55 eveaeeealvvngkkikvlaekdpeelpwke 85 
                 + +++ ++ +v+g++ +v+ ++ ++ l w +
  EHT99383.1 287 DFNHDPHSAIVDGTQTRVSGQHLIKTLVWCD 317
                 5566667778888888888888888888865 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.6e-06     0.029       1      88 [.       9     121 ..       9     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.6e-06
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TT...........................HHHHHT--CB---HHHHHHHH........... CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskd...........................rkallasealtldlddliahl........... 58 
                    G+G iG+ vl++l +  +++e+++va+ +     +++                             +++ +             l           
     EHT99383.1   9 GFGRIGRNVLRALYETGRRAEITVVAINELA---EAAgmahllkydtshgrfaldvrqerdllwVGEDTIRI------------Lhhagldalpwr 89 
                    99***************98888888876666...22234568888899666655544444444333344444............155566666666 PP

                    ..S-EEEEE-S--HHHHTTHHHHHHTTEEEE- CS
  NAD_binding_3  59 ..dpdvvVEcasseavaelvlkaLkagkdvvt 88 
                      ++dvv++c+++   ++  ++ L+ag   v 
     EHT99383.1  90 elNVDVVLDCTGVYGSRQDGEAHLRAGTKKVL 121
                    678**********9999999999999977665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.061       1      31 [.       5      37 ..       5      57 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                EEEES-SHHHHHHHHHHHH.TT.EEEEEEESSH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.gg.kdvvvidkde 31
                ++i G+Gr+Gr++++ L e g   +++v+  +e
  EHT99383.1  5 VAINGFGRIGRNVLRALYEtGRrAEITVVAINE 37
                6799***************55495599999987 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.9e-05     0.056       1      41 [.       3      43 ..       3     126 .. 0.86
   2 ?   -3.2   0.0         5   1.5e+04      19      42 ..     181     204 ..     170     208 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHH CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraea 41
                  +rvai G+G+ig++ lr+l e+ r++e++ +  ++ ++a  
    EHT99383.1  3 IRVAINGFGRIGRNVLRALYETGRRAEITVVAINELAEAAG 43
                  69************************999777666665554 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5
                   HHHTTTTEEEEEEECSSHHHHHHH CS
  GFO_IDH_MocA  19 lnesqrleevvalldpdaeraeav 42 
                   ++ + ++++v+ ++++d  r +a+
    EHT99383.1 181 IHSAMHDQQVIDAYHSDLRRTRAA 204
                   444555667777777777776665 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     9e-05      0.27       1      25 [.       3      26 ..       3      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9e-05
                EEEEEETTTSHHHHHHHHHHHHSTT CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaed 25
                i+va++G+ Gr+G++v++a+ e+ +
  EHT99383.1  3 IRVAINGF-GRIGRNVLRALYETGR 26
                79******.**********999733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2592.10
//
Query:       EHT99384.1  [L=664]
Description: transketolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-169  560.9   0.0   1.1e-168  560.4   0.0    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    1.7e-45  154.9   0.4    3.4e-45  153.9   0.0    1.7  2  Transket_pyr     Transketolase, pyrimidine binding domain
    6.6e-19   68.0   0.1    1.7e-18   66.7   0.0    1.8  2  Transketolase_C  Transketolase, C-terminal domain
      5e-06   25.9   0.0      0.067   12.4   0.0    2.8  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    0.00035   20.4   1.0      0.026   14.3   1.0    2.7  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.4   0.0  3.2e-172  1.1e-168       2     334 .]       4     334 ..       3     334 .. 0.99

  Alignments for each domain:
  == domain 1  score: 560.4 bits;  conditional E-value: 3.2e-172
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      +k+++naiR+L++Dav+kaksGhPGap+g+adiaevl++  l+hnP++p w+dRDRfvLsnGh+s+l+YsllhLtGydl++++l++frql+skt
       EHT99384.1   4 RKDLANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRGYLNHNPTNPLWADRDRFVLSNGHGSMLIYSLLHLTGYDLPISELENFRQLHSKT 97 
                      6889****************************************************************************************** PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                      pGhPe+g+t gve+ttGPLGqGianavg+a+ae+tlaa++n+pg+divdh t+v++gDgc+meG+s+e++slagtlkLgkL+++yDdn isidG
       EHT99384.1  98 PGHPEYGYTVGVETTTGPLGQGIANAVGFAIAERTLAAQFNRPGHDIVDHNTWVFMGDGCMMEGISHEVCSLAGTLKLGKLVAFYDDNGISIDG 191
                      ********************************************************************************************** PP

                      EGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-TS CS
  Transketolase_N 190 eteisftedvakrfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeksf 283
                      +++ +ft+d+akrfeaygWhv++  dg+++ ai++aieeaka++dkPsl++++tviG+gsp+kagt+d+hGapLg+deva ++k+lG++ + +f
       EHT99384.1 192 HIDGWFTDDTAKRFEAYGWHVVRGVDGHNADAIAKAIEEAKAVTDKPSLLMCKTVIGFGSPNKAGTHDSHGAPLGDDEVALTRKQLGWE-YPPF 284
                      *****************************************************************************************.**** PP

                      ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 284 evpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      ++p+e+y+++++k+a g+++e++W+ekfaay+k++pe+aae++rr+s+elP
       EHT99384.1 285 VIPSEIYAEWDAKEA-GQAKEAAWNEKFAAYAKAFPELAAEFKRRMSNELP 334
                      ***************.*********************************99 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.0   9.5e-49   3.4e-45       2     176 ..     354     524 ..     353     526 .. 0.97
   2 ?   -4.2   0.1       3.2   1.1e+04      62      85 ..     627     649 ..     623     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 9.5e-49
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT..TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg..egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqai 96 
                   kia rka+++a+++ +k  pe ++++aD+a ++++ ++g++  ++  +g++i++g++E++++++a+G+al+g+ + ++ a+F++F++    ya++a 
    EHT99384.1 354 KIASRKASQNAIEAFGKILPEYLGGSADLAPSNLTIWSGSKPINEdaAGNYIHYGVREFGMTAIANGLALHGG-FLPYTATFLMFVE----YARNAA 445
                   7999************************************9998888*************************6.*************....****** PP

                   HCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  97 rsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   r ++a++k++ + v+t+++ig+gedGp+hq++e++a+lr++p+++ +rP+d++e + +++ ai+r+ ++P++l++++++l 
    EHT99384.1 446 R-MAALMKIRQImVYTHDSIGLGEDGPTHQPVEQMASLRTTPNMSLWRPCDQVESAVAWKYAIERK-DGPSALIFSRQNLA 524
                   *.********999***************************************************87.6***********97 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3.2
                   HHHHHHHHHCTTEEEEEEEEHHHH CS
  Transket_pyr  62 gfavGaalagpllviveaqFgdFa 85 
                   g+ vG+ + g    ++e  F +F 
    EHT99384.1 627 GAIVGMTTFG-ESAPAEKLFEVFG 649
                   7789999999.5999999998885 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.9   6.7e+03      61      84 ..     147     170 ..     144     175 .. 0.79
   2 !   66.7   0.0   4.7e-22   1.7e-18       1     124 []     540     655 ..     540     655 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.9
                      HSEEEEEEEEESTTSHHHHHHHHH CS
  Transketolase_C  61 tgrlvvveeavkrgGigsevaaal 84 
                      ++  v++ +++ + Gi+ ev+++ 
       EHT99384.1 147 HNTWVFMGDGCMMEGISHEVCSLA 170
                      677788899999999999998875 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 4.7e-22
                      TEEEEEET.TSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C   1 gkaeilre.gkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgld 93 
                      g++  ++   ++++l+a+Gs+ve a++A ++L +eg +++Vv++++++ +Dk+  +     +++ v+ +  + r++i++ +a+++ +  ++gl+
       EHT99384.1 540 GYVLKDSAgTPELILIATGSEVELAVAAYQKLTEEGRKVRVVSMPSTDAFDKQSEE-----YRESVLPKAVAARVAIEAGIADYWFK--YTGLN 626
                      566677665789******************************************99.....**************************..***** PP

                      SEEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  94 apvkrvggpdviepgsaeelekafgldaeki 124
                      ++++ ++ +  +e+++ae+l + fg++ +++
       EHT99384.1 627 GAIVGMTTF--GESAPAEKLFEVFGFTLDNV 655
                      ******999..99*************98876 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.9e-05     0.067      20     179 ..       6     193 ..       2     199 .. 0.69
   2 !   10.6   0.0   6.5e-05      0.23     232     272 ..     203     244 ..     193     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
  DXP_synthase_N  20 elaeelrefliesvsk.tggHlasnLgvveLtlalhyvf..d.......tpkDklvwDvgHqa...YvhKiltgRkdkfktlrqkgGlsg.fpkr 100
                     +la+ +r+  +++v+k ++gH ++ +g+ +++  l++ +  +       +++D++v   gH +   Y    ltg    +++l +   l++  p +
      EHT99384.1   6 DLANAIRALSMDAVQKaKSGHPGAPMGMADIAEVLWRGYlnHnptnplwADRDRFVLSNGHGSmliYSLLHLTGYDLPISELENFRQLHSkTPGH 100
                     67888888888888652678888888888888888766532111111113468888888887643355666788887666666655554312333 PP

  DXP_synthase_N 101 sEseyD...afeagHsstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkllvilNdNemsisknv 179
                      E  y      ++g  +  i+ a+G+a+a+++             ++++   +GDg +  G+++e    +g+lk  kl+  + dN  si+ ++
      EHT99384.1 101 PEYGYTvgvETTTGPLGQGIANAVGFAIAERTLAAqfnrpghdivDHNTWVFMGDGCMMEGISHEVCSLAGTLKlGKLVAFYDDNGISIDGHI 193
                     444443111467788889999*******977655436666666666888899*******************9983589999*******98766 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.5e-05
  DXP_synthase_N 232 tlfeelgfkYlGpidGhdleelikvleevkkl.kgpvllhvv 272
                     + fe+ g + +  +dGh+ +++ k++ee+k++ ++p ll + 
      EHT99384.1 203 KRFEAYGWHVVRGVDGHNADAIAKAIEEAKAVtDKPSLLMCK 244
                     569***************************974779998765 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.0   7.4e-06     0.026      24     150 ..     110     240 ..      92     243 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.4e-06
                   ETTTS-TTTHHHHHHHHHHH............ST..TSEEEEEEEHHHHHHT.GGGHHH.HHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSB CS
  TPP_enzyme_C  24 sgglgtmGyglpaAiGakla............kp..drevvaivGDGgflmi.lqelat.avrrnlpitvvvlnNegygmtggqqepfggkrksgpa 104
                   ++++g +G g++ A+G ++a            +   d++ ++++GDG+++    +e+   a   +l  +v  ++++g    g+    f++       
    EHT99384.1 110 ETTTGPLGQGIANAVGFAIAertlaaqfnrpgHDivDHNTWVFMGDGCMMEGiSHEVCSlAGTLKLGKLVAFYDDNGISIDGHIDGWFTD------- 199
                   7899***************4445556777444223459**********998855555441556677778888888888655554444443....... PP

                   B.BS----HHHHHHHTTSEEE.EESSH.HHHHHHHHHHHH.CSSSEEE CS
  TPP_enzyme_C 105 gkdlkpvdfaklaealGakga.rvekadveeleealkeal.ekkgpal 150
                          d ak  ea+G +++  v+ ++ + +++a++ea   +++p+l
    EHT99384.1 200 -------DTAKRFEAYGWHVVrGVDGHNADAIAKAIEEAKaVTDKPSL 240
                   .......56677788888844477777888888888888755666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 4921.35
//
Query:       EHT99385.1  [L=251]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-28   97.7   0.2    1.4e-27   96.8   0.2    1.4  1  Peptidase_M48  Peptidase family M48
  ------ inclusion threshold ------
      0.019   15.5   0.4       0.04   14.4   0.4    1.5  1  LPAM_1         Prokaryotic membrane lipoprotein lipid attachm


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.2   1.5e-31   1.4e-27       4     195 ..      70     245 ..      65     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.5e-31
                    SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   4 eaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllgla 99 
                    +++l+++   l ++++    + ++ v++ +++NA+a+ +g    i +++gL+ ++++++e++aVlGHE+GH++ +h+++ + v+   + + + +++
     EHT99385.1  70 QQRLNKIAAALGDNING--TPANYKVYQTKDVNAWAMANG---CIRVYSGLM-DMMNDNEVEAVLGHEMGHVALGHTRKAMQVAFTTTAARTAAAS 159
                    44455555555555555..7788888888889********...*********.************************9988888888888777776 PP

                    HHTT-SHHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHHS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 100 llisraeedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsellstHPplleRiqalkel 195
                    + +   ++ +++  +d           l+ + +S ++E+qAD +++ llk+++ ++  l++ +++l++ +++ +    ++ +HP+++ R q+++++
     EHT99385.1 160 VGGIIGSLSQSQ-LGDMG-------EKLVNAQFSQTQETQADDYSYDLLKKRGIDPVGLATSFEKLAKLEQGRQS--SMFDSHPDSEARAQHIRDR 245
                    554444433333.32222.......3344559***********************************99999995..7***************986 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   4.4e-06      0.04       3      17 ..       5      19 ..       4      19 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.4e-06
      LPAM_1  3 KillalgalllLsGC 17
                K++lalg+++lLsGC
  EHT99385.1  5 KTVLALGMIALLSGC 19
                99************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1987.93
//
Query:       EHT99386.1  [L=306]
Description: agmatinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-83  279.5   0.2    3.9e-83  279.2   0.2    1.0  1  Arginase   Arginase family
  ------ inclusion threshold ------
       0.19   12.0   0.1       0.27   11.4   0.1    1.4  1  UPF0489    UPF0489 domain
       0.19   11.7   0.0       0.38   10.7   0.0    1.4  1  ApoB100_C  Apolipoprotein B100 C terminal


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.2   0.2   6.5e-87   3.9e-83       2     277 ..      35     297 ..      34     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 279.2 bits;  conditional E-value: 6.5e-87
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBT.HCHEETTTTESCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHH CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarlee.aleynlelgvleelkivdlgdvavtpvdneevleqieeavaeilkagklpivlGGDHsialgi 99 
                 + ++ GvPfdaa+sgrpG+r GP air+ s++l++   ++  + +  ++l++vd+gd+  +++d +++ ++++++++++l++gk++++lGGDH ++l+ 
  EHT99386.1  35 EWVITGVPFDAATSGRPGSRLGPGAIRQISTNLAWeGCRWPWDFDLRQRLNVVDCGDLVYAFGDSQDLSDKLQAHAEKLLANGKRMMTLGGDHYVTLPL 133
                 579*******************************545555444455799************************************************** PP

                 HHHHHHHHSTTEEEEEESSS----SSCTTTBSSSTTSHHHHHHHHTSECGCEEEEEEE-STCSHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHT CS
    Arginase 100 lralaekygkplgvihfDAHaDlrtpetegsgnshGtpfrraaeegllkpkklvqiGirsvdneeyelakelgirvitmreidelglkavveeilervg 198
                 lra+a+++gk ++++hfDAH+D+     +g +++hGt+f+ a +egl++p+++vqiGir+       ++k+lg++v+++ ++++++++++++ei++ vg
  EHT99386.1 134 LRAHAKHFGK-MALVHFDAHTDTYS---NGPTFDHGTMFFTAPKEGLIDPQHSVQIGIRTE------FDKSLGFNVLDAAQVNDRSVDDILAEIKRTVG 222
                 ********95.************97...5689***************************84......46689**************************9 PP

                 CTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHH CS
    Arginase 199 aeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrel 277
                 +   pvyl+fDiD+lDpa aPGtGtp+ gGlt++++ +l+r+l++  n+vg+D+vEv+P +d+++  ta++aa+l+ ++
  EHT99386.1 223 D--LPVYLTFDIDCLDPAHAPGTGTPVIGGLTTDKATKLIRGLQG-MNIVGMDLVEVAPGYDHAD-LTALAAATLALDM 297
                 5..5*****************************************.*****************65.**********994 PP

>> UPF0489  UPF0489 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.6e-05      0.27      24      39 ..     141     156 ..     131     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
     UPF0489  24 psdlslvHlDaHpDll 39 
                 + ++ lvH+DaH+D+ 
  EHT99386.1 141 FGKMALVHFDAHTDTY 156
                 57899*********85 PP

>> ApoB100_C  Apolipoprotein B100 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.4e-05      0.38       7      36 ..     100     129 ..      99     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.4e-05
   ApoB100_C   7 qefsdqlsdyyEkliaeskrLiDLsIekYh 36 
                 q++sd+l    Ekl+a+ kr+  L  ++Y 
  EHT99386.1 100 QDLSDKLQAHAEKLLANGKRMMTLGGDHYV 129
                 9*******************9988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2178.35
//
Query:       EHT99387.1  [L=659]
Description: PLP-binding biosynthetic arginine decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-67  227.9   0.1    1.7e-67  227.4   0.1    1.2  1  Orn_Arg_deC_N   Pyridoxal-dependent decarboxylase, pyridoxal 
    2.7e-22   78.8   0.1    6.1e-22   77.7   0.1    1.6  1  Arg_decarb_HB   Arginine decarboxylase helical bundle domain
    1.6e-17   63.7   2.1    5.1e-17   62.2   2.1    1.9  1  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.1   2.8e-71   1.7e-67       1     247 []     100     367 ..     100     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 227.4 bits;  conditional E-value: 2.8e-71
                    HHHHHHHHHHHHHHCT...CCEEEEEGGG---HHHHHHHHHTT..EEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHT....EE CS
  Orn_Arg_deC_N   1 lasierklkrwkkalp...rikvfYavKansdlavlellaelG..lgldcaSkaElelvlaagvsperiifanpckqreelryalekgvk....vv 87 
                    l+si++++kr++++++   +++++Y++K+n++++v+e+l ++G  lgl+++SkaEl++vla++++++++i++n++k+re++r al  +++    ++
     EHT99387.1 100 LRSINAAFKRARESYGytgDYFLVYPIKVNQHKRVIESLVNSGepLGLEAGSKAELMAVLAHAGHTRSVIVCNGYKDREYIRLALIGEKMghkvYL 195
                    579**************9**********************************************************************999999** PP

                    EESSHHHHHHHHHHHCC....EEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHC...HHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHH CS
  Orn_Arg_deC_N  88 tvdnveeleklaklape....akvllRiktdvsaatcelistggessKFGaale...eavealleaakeenlqlvGvsfHvGSgvsdleafvkave 176
                    +++++ e++ + ++a++    +++ +R+++ +s+++ +++s+gge+sKFG +++   + ve ++ea + ++lql  ++fH+GS+++++++++++v+
     EHT99387.1 196 VLEKMTEVRLVLEEAERlnvvPRLGIRARL-ASQGSGKWQSSGGEKSKFGLSATqvlKLVEIMREAGRIDSLQL--LHFHLGSQMANIRDIATGVR 288
                    *****************99999********.*******************777668899***************..******************** PP

                    HHHHHHHHHHHHT---SEEE--S-BS-HCSTTSSSST......HHHHHHHHHHHHHHHHH..TSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 177 kalklfdelaelGvklkiLdvGGGfgveyeeeeeplk......leeiaekirealeeafp..gdkevtiiaEpGRalva 247
                    +++++++ela+lGv++k++dvGGG+gv+ye+++++++      l+e+a+++++a++ a+   g +++t+i+E+GRa++a
     EHT99387.1 289 ESARFYVELAKLGVNIKCFDVGGGLGVDYEGTRSQSDcsvnygLNEYANNVIWAIGAACDehGLEHPTVITESGRAVTA 367
                    ***********************************************************99999************997 PP

>> Arg_decarb_HB  Arginine decarboxylase helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1     1e-25   6.1e-22       2      84 .]     393     479 ..     392     479 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1e-25
  Arg_decarb_HB   2 edapellqnLwelleels....qrnlqEiyhDavhyldearelFrlGllsLeerAkaEqlylaicrkirkllkeeerapreildeLn 84 
                    +dap+ + ++we+++e++    +r+l+E++hD + +l ++++ ++ G  sL++rA+aEqlyl+ic+ i++ l++++ra+  i+deL+
     EHT99387.1 393 DDAPRPILSMWETWQEMHepntRRSLREWLHDSQMDLFDIHTGYSSGIYSLKQRAWAEQLYLSICHYIQQHLDPRNRAHLPIIDELQ 479
                    699**********************************************************************************96 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   2.1   8.5e-21   5.1e-17       1      51 []     607     656 ..     607     656 .. 0.99

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 8.5e-21
  Arg_decarbox_C   1 VadVLryVqYdpeeLlerlrrqveaagrLtpeerqalleeleagLkgyTYL 51 
                     Vad+L+yVq dp+eL++ +r+q++++ +L+++ r+++l+e+e+gL gyTYL
      EHT99387.1 607 VADMLQYVQLDPNELMTLFRKQIQTS-ELDEDLREQFLQEFESGLYGYTYL 656
                     89************************.***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4594.50
//
Query:       EHT99388.1  [L=383]
Description: methionine adenosyltransferase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-70  234.8   0.1    5.4e-70  233.8   0.0    1.6  2  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    1.5e-47  160.8   0.0    5.4e-47  159.0   0.0    1.9  2  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    5.7e-43  145.6   0.2    1.2e-42  144.6   0.2    1.5  1  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 
  ------ inclusion threshold ------
      0.039   12.7   0.6        1.2    7.8   0.1    2.6  3  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt
       0.19   11.9   0.0       0.33   11.1   0.0    1.3  1  PAS_11           PAS domain


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.9   6.9e+03      79     100 ..     184     205 ..     166     209 .. 0.62
   2 !  233.8   0.0   1.5e-73   5.4e-70       1     138 []     233     370 ..     233     370 .. 1.00

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.9
                      EEEEE-S-BSS-HHHHHHHHHH CS
  S-AdoMet_synt_C  79 isvetfgtekvseeeiaeivke 100
                      + ++t+++e +s+++++e+v e
       EHT99388.1 184 VVLSTQHSEAISQNDLQEAVME 205
                      4455666667788888877765 PP

  == domain 2  score: 233.8 bits;  conditional E-value: 1.5e-73
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp+gd+GltgrkiivdtYgg+a+hgggafsgKdp+kvDrsaayaaryvakn+vaagla+++e+q+sYaigvaep+si+vetfgtekvs+e++
       EHT99388.1 233 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVSTEQL 326
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--T-TTS. CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgreelpwek 138
                      + +v+e fdlrp ++i++ldL +piyk+taayghfgre++pwek
       EHT99388.1 327 TLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEK 370
                      *******************************************7 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.95   3.4e+03      86     103 ..      18      35 ..       8      53 .. 0.50
   2 !  159.0   0.0   1.5e-50   5.4e-47       1     120 []     114     231 ..     114     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.95
  S-AdoMet_synt_M  86 klredlkekvikkvlkee 103
                      k+++++ + v++++l+++
       EHT99388.1  18 KIADQISDAVLDAILEQD 35 
                      344444444444444222 PP

  == domain 2  score: 159.0 bits;  conditional E-value: 1.5e-50
  S-AdoMet_synt_M   1 eigAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYeeelkpvrvdtvvistqhdeevsqeklredlkek 94 
                      e+gAgDqG+mfGYAt+et+ lmP+p+++ah+l++r ae+rk+g+l++lrpDaKsqvt++Y +++k v +d+vv+stqh+e +sq++l+e+++e+
       EHT99388.1 114 EQGAGDQGLMFGYATNETDVLMPAPVTYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY-DNGKIVGIDAVVLSTQHSEAISQNDLQEAVMEE 206
                      69**********************************************************.599****************************** PP

  S-AdoMet_synt_M  95 vikkvlkeelldekktkllinptGkF 120
                      +ik+vl++e+l++ +tk++inptG+F
       EHT99388.1 207 IIKPVLPSEWLNA-STKYHINPTGRF 231
                      *******999987.5**********9 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.2   3.3e-46   1.2e-42       2      98 ..       4     100 ..       3     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 3.3e-46
  S-AdoMet_synt_N   2 ylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvale 95 
                      +lftsesVseGHPDk+adqisda+ldail++dpkarvacet+v+tg+v+v geitt+a vdie+i+r++++eigY ++++gfda++c+vl+a+ 
       EHT99388.1   4 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIG 97 
                      79******************************************************************************************** PP

  S-AdoMet_synt_N  96 eqs 98 
                      +qs
       EHT99388.1  98 KQS 100
                      **9 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1   0.00034       1.2      25      44 ..      12      31 ..       6      56 .. 0.83
   2 ?    1.9   0.0     0.022        79      85     165 ..      51     128 ..      44     150 .. 0.82
   3 ?   -1.3   0.0      0.19     7e+02     277     371 ..     238     327 ..     233     336 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00034
                     -TTSHHHHHHHHHHHHHHHH CS
  AdoMet_Synthase 25 GiGHPDsiaDgiaeavsral 44
                       GHPD+iaD+i++av  a+
       EHT99388.1 12 SEGHPDKIADQISDAVLDAI 31
                     67************997665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.022
                      EEEEEEEEEEE.EEE--HHHHHHHHHHH..HHHHH-SS--TTTSEEEEEEEEEEEEHHHHHHCH-SS..-BESSSEEEEEEES CS
  AdoMet_Synthase  85 illsgratkevegekipveeialeaake..ylkenlraldlekdvivdvklgkgsadLkdvferkkkevplaNDtSfgvgyap 165
                      +l++g  t+   +  +++eei+ ++++e  y+++ +  +d + +  v   +gk s+d+++ ++r++   + a D  +  gya 
       EHT99388.1  51 VLVGGEITT---SAWVDIEEITRNTVREigYVHSDMG-FDAN-SCAVLSAIGKQSQDINQGVDRSDPLEQGAGDQGLMFGYAT 128
                      666666666...56799**********8768888887.5776.5677789*********999998886689999999999985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.19
                      T--EETTSS--TTSSB-TTS----S--TTS-TTT-HHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEE-TTSBTTS-SEEEEEEEESSS---HHS CS
  AdoMet_Synthase 277 gDdGsvGRGNRvnGlitpnrpmslEAaaGKNPvsHvGKiYnvlaneiakeiveevegvkevyvrllsqiGkpidePlvasvqvilekgvsleev 370
                      gD+G +GR   v     + r  +  A +GK P s v +     a+ +ak+iv+     + +++++   iG  + eP+ + v+   +++vs+e++
       EHT99388.1 238 GDCGLTGRKIIVDTYGGMARH-GGGAFSGKDP-SKVDRSAAYAARYVAKNIVAAG-LADRCEIQVSYAIG--VAEPTSIMVETFGTEKVSTEQL 326
                      666666666665555555554.4467788888.5677777778888888888743.34667777777777..6688888888887777777776 PP

                      H CS
  AdoMet_Synthase 371 e 371
                      +
       EHT99388.1 327 T 327
                      5 PP

>> PAS_11  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.1e-05      0.33       3      46 ..     168     210 ..     166     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.1e-05
      PAS_11   3 qfttrldidgkIisvDtsaLrasfslglekeelvgrsiydLchp 46 
                 q t++ d +gkI+ +D+  L+ ++s+ +++++l++ ++ ++++p
  EHT99388.1 168 QVTFQYD-NGKIVGIDAVVLSTQHSEAISQNDLQEAVMEEIIKP 210
                 5566555.8***************************99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2796.68
//
Query:       EHT99389.1  [L=463]
Description: D-galactose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-138  462.6  28.6   1.5e-138  462.4  28.6    1.0  1  Sugar_tr        Sugar (and other) transporter
    2.7e-42  145.0  44.5    8.1e-33  113.8  16.2    2.0  2  MFS_1           Major Facilitator Superfamily
    6.7e-11   41.3   5.2    6.7e-11   41.3   5.2    2.1  2  TRI12           Fungal trichothecene efflux pump (TRI12)
    1.4e-10   40.4  17.9    1.8e-07   30.1   5.1    3.9  4  MFS_2           MFS/sugar transport protein
      0.002   17.1   1.0      0.002   17.1   1.0    3.3  2  MFS_1_like      MFS_1 like family
     0.0081   15.2   1.5      0.043   12.8   0.4    2.7  3  SHR3_chaperone  ER membrane protein SH3
  ------ inclusion threshold ------
      0.026   13.0   0.5      0.026   13.0   0.5    2.5  3  Acatn           Acetyl-coenzyme A transporter 1
       0.04   12.2  16.8       0.28    9.4   1.2    3.2  3  OATP            Organic Anion Transporter Polypeptide (OATP) 
        1.2    9.4   3.7        1.2    9.4   0.1    2.7  3  DUF4381         Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.4  28.6  7.7e-142  1.5e-138       1     451 [.      19     451 ..      19     452 .. 0.98

  Alignments for each domain:
  == domain 1  score: 462.4 bits;  conditional E-value: 7.7e-142
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 v+++aal+gllfg d+gvi+++l +++  k+f+++ +++   e      +ivs++++Ga+iG++ +g+++ r+GRkksl+++a+lfvig++ +a+a+  
  EHT99389.1  19 VCFLAALAGLLFGLDIGVIAGALPFIA--KDFNVTAHQQ---E------WIVSSMMFGAAIGAIGSGWMSSRLGRKKSLMAGAILFVIGSLWSAMAP-- 104
                 79*************************..8888888875...3......9***********************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  + e+li +Rvl+G++vG+as+++P+y+sEiAp+k+Rg ++slyql+it+Gil a+ ++++++ t+n   wr++lg+  +pa+llli+++flP+SPr+l
  EHT99389.1 105 -NPEMLICARVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISLYQLMITIGILGAYLSDTAFSFTGN---WRWMLGVITIPAILLLIGVFFLPNSPRWL 199
                 .9*****************************************************************...***************************** PP

                 HHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrge.edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvt 293
                   kg+  +a++vl +lr++ e+a+rel+e+ +sl+ +q+     w+ +  + + r+++++g++lq++qq+tG+n+imyy+p+ife +g+ ++   +++t
  EHT99389.1 200 AAKGNFRDAQRVLDRLRDTsEQAKRELDEIRESLKVKQSG----WGLFTNNANFRRAVFLGILLQVMQQFTGMNVIMYYAPKIFEIAGFANTtqqMWGT 294
                 ***************777769****************665....**********************************************9999***** PP

                 HHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHH CS
    Sugar_tr 294 iivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiav 392
                 +ivg vn++atf+ai lvdr+GR+++l+lG+++ma+ + ilg++ +++ ++  +a++ ai ++++fi+ fa++ gp++wvl+sE++p++ R++++++++
  EHT99389.1 295 VIVGLVNVLATFIAIGLVDRWGRKPTLILGFLVMAAGMGILGTMLHMGIHTP-GAQYFAIGMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITVST 392
                 ******************************************9999999995.********************************************** PP

                 HHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 393 avnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                 ++nw+an++++ +f ++++++g++++f+v+a l+v+fi+ +++ +petk+++le+ie+ 
  EHT99389.1 393 TTNWIANMIVGATFLTMLNTLGNAPTFWVYALLNVFFIVLTVMLIPETKNVSLEHIERN 451
                 ********************************************************985 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8  16.2   4.1e-36   8.1e-33       2     240 ..      24     284 ..      23     288 .. 0.82
   2 !   39.5  23.4   1.6e-13   3.2e-10       3     177 ..     259     442 ..     257     460 .. 0.82

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 4.1e-36
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +la++l +l++++++ alp ++a+d++++++++ ++++  ++gaa++++  G++s r+Gr++ l++g++lf++g+l+ ++ ++ + +l+ +rvl Gl+ 
  EHT99389.1  24 ALAGLLFGLDIGVIAGALP-FIAKDFNVTAHQQEWIVSSMMFGAAIGAIGSGWMSSRLGRKKSLMAGAILFVIGSLWSAM-APNPeMLICARVLLGLAV 120
                 7899***************.******************************************************777777.67788************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 g++  ++  ++++++p++ rg++i+l+++++ +G++ ++l   +++  ++Wr++  +++i ++l+++ ++++lp +p+  + k   ++           
  EHT99389.1 121 GVASYTAPLYLSEIAPEKIRGSMISLYQLMITIGILGAYLSDTAFSFTGNWRWMLGVITIPAILLLI-GVFFLPNSPRWLAAKGNFRDAqrvldrlrdt 218
                 ***********************************999999999999999**************977.4466666666555555555559999999999 PP

       MFS_1 189 kgtgpaplvp..........awkallkdpvlw.....illialllfffgfsglltllplylqevlgl 240
                 + +++++l +          +w+++ ++  +       +l+ +   f+g++ ++++ p +  e  g+
  EHT99389.1 219 SEQAKRELDEireslkvkqsGWGLFTNNANFRravflGILLQVMQQFTGMNVIMYYAPKI-FEIAGF 284
                 444444444444455566788888888887744211244444444466666699999985.666666 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 1.6e-13
       MFS_1   3 laaflsalarsilgpalplalaedlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf...a.....sslw.lllv 90 
                 l ++  ++++++++  +p  + e  g++ ++ + + +++++l+ ++a++++  l+dr+Gr+++l+lg+l++a+g ++l+++   +     ++++ + ++
  EHT99389.1 259 LQVMQQFTGMNVIMYYAP-KIFEIAGFANTTqQMWGTVIVGLVNVLATFIAIGLVDRWGRKPTLILGFLVMAAGmGILGTMlhmGihtpgAQYFaIGML 356
                 666778899999999999.88888886665526667777***********************************666666545514567788999**** PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                 l ++ G+++ ++ p++ +l +++ p + r ++i + ++++ ++  i+g+ +  +l   lg   +f++ a++ ++++vl ++l+pe++ 
  EHT99389.1 357 LMFIVGFAM-SAGPLIWVLCSEIQPLKGRDFGITVSTTTNWIANmIVGATFLTMLN-TLGNAPTFWVYALLNVFFIVLTVMLIPETKN 442
                 ********8.8899999***************************666677777777.778889************9996666665543 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   5.2   3.4e-14   6.7e-11      39     228 ..      11     202 ..       5     215 .. 0.79
   2 ?   -2.5   7.3      0.64   1.3e+03      81     211 ..     290     431 ..     248     447 .. 0.53

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 3.4e-14
       TRI12  39 sprvvasfaafslnvvatyfvlq..asasalpnilqdvgqse.nsslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntl 134
                 s + ++ f +f   ++   f l+    a alp i +d   +  ++  + +    g a+  +  g ++ r+gr+  +++  il ++g++  + a + + l
  EHT99389.1  11 SNKAMTLFVCFLAALAGLLFGLDigVIAGALPFIAKDFNVTAhQQEWIVSSMMFGAAIGAIGSGWMSSRLGRKKSLMAGAILFVIGSLWSAMAPNPEML 109
                 55666667777777777777776224689********98665145556666788********************************************* PP

       TRI12 135 laamtllgvaagpag.asplfvgelmsnktkflgllivsipvvvtsglspylgq.rlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgk 228
                 ++a  llg+a g a  ++pl++ e+  +k +   ++ +   ++++  l+ yl +  ++  g+wrw++ +  i     +lli v++ p s + l  k
  EHT99389.1 110 ICARVLLGLAVGVASyTAPLYLSEIAPEKIRGS-MISLYQLMITIGILGAYLSDtAFSFTGNWRWMLGVITI--PAILLLIGVFFLPNSPRWLAAK 202
                 ************997478*******99987632.333444456666689***86268********9876444..4456889999999999888766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.64
       TRI12  81 slfstlwt.tgqavsilvmgrltdrfgrrpfvilthil.....glvgaivgct.....atkfntllaamtllgvaagpagasplfvgelmsnktkflgl 168
                  ++ t+   + + ++ ++   l dr+gr+p +il  ++     g++g+++        a+ f   +  m ++g a        ++  e+   k + +g+
  EHT99389.1 290 QMWGTVIVgLVNVLATFIAIGLVDRWGRKPTLILGFLVmaagmGILGTMLHMGihtpgAQYFAIGMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGI 388
                 44444432134455566667799*******888877642222266666543321111144444444445555544433333344556666667777776 PP

       TRI12 169 livsipv.vvtsglspylgqrlaiqgswrwifyiyiitsaiavl 211
                  + +    ++   ++  +   l   g+    f++y ++    ++
  EHT99389.1 389 TVSTTTNwIANMIVGATFLTMLNTLGNAP-TFWVYALLNVFFIV 431
                 44333321444455666666666666643.45555555544444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   4.9   5.7e-09   1.1e-05     228     337 ..      22     129 ..       5     139 .. 0.79
   2 ?    1.0   2.2      0.06   1.2e+02     372     420 ..     144     192 ..     135     196 .. 0.76
   3 !   30.1   5.1   8.8e-11   1.8e-07     217     341 ..     240     377 ..     216     379 .. 0.78
   4 ?    0.9   1.0     0.067   1.3e+02     265     309 ..     392     436 ..     381     447 .. 0.51

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 5.7e-09
       MFS_2 228 illllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagf 326
                 + +l++ll+ l +gv +g+l + ++++  ++ + +++   ++ +a++g++   ++ +rlg+k++ ++ga+l +++++   ++ p n  +++ + v+ g+
  EHT99389.1  22 LAALAGLLFGLDIGVIAGALPFIAKDFNVTAHQQEWIVSSMMFGAAIGAIGSGWMSSRLGRKKSLMAGAILFVIGSLWSAMA-P-NPEMLICARVLLGL 118
                 3345566777778999***********99***********************************************999999.5.45555556666677 PP

       MFS_2 327 gvgvaallpws 337
                 +vgva ++++ 
  EHT99389.1 119 AVGVASYTAPL 129
                 77776665554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.06
       MFS_2 372 iglgvsgllLsafgyrakasvqspqvvlalrllyavlpavlllvallll 420
                 i+l  +++ +++ g    + + s +++++ +l ++++pa+lll+++++l
  EHT99389.1 144 ISLYQLMITIGILGAYLSDTAFSFTGNWRWMLGVITIPAILLLIGVFFL 192
                 6666667777777667888888888888888888888888888888876 PP

  == domain 3  score: 30.1 bits;  conditional E-value: 8.8e-11
       MFS_2 217 lkevfrnrafl.illllfllaalalgvlnglllYyltyvlg.ngsaasvfllvv.tisal...lgiplwqplakrlgkkntyllgalltivllvlvlll 309
                 ++ + +n  f+ +++l++ll+++ ++ + +  +Yy+ ++ + +g+a +++ +   +i +l   l+++++  l+ r+g+k t +lg+l++++++ ++  +
  EHT99389.1 240 WGLFTNNANFRrAVFLGILLQVMQQFTGMNVIMYYAPKIFEiAGFANTTQQMWGtVIVGLvnvLATFIAIGLVDRWGRKPTLILGFLVMAAGMGILGTM 338
                 55556666665268999999******************9988888766665555333333455*****************************9998888 PP

       MFS_2 310 ......qpsnlllflvllviagfgvgv.aallpwsmlad 341
                       +p+  ++++ +l+++ +g+++ a+ l+w + ++
  EHT99389.1 339 lhmgihTPGAQYFAIGMLLMFIVGFAMsAGPLIWVLCSE 377
                 89****777777777777777777777578888887765 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.067
       MFS_2 265 llvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll 309
                 +++  i+++++ + +  +   lg+  t+ + all +++ vl+++l
  EHT99389.1 392 TTTNWIANMIVGATFLTMLNTLGNAPTFWVYALLNVFFIVLTVML 436
                 444444444444444444444555555555555555555555554 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.0     1e-06     0.002     280     358 ..      73     151 ..      55     173 .. 0.90
   2 ?    2.4   4.2     0.029        57     215     310 ..     209     338 ..     150     366 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
  MFS_1_like 280 aeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsgly 358
                 + ++  +lG  k l+++ +++++  l+ a+  n+ +++ + vL g+++g+   +a  y s+iap+++++ +++l++ + 
  EHT99389.1  73 SGWMSSRLGRKKSLMAGAILFVIGSLWSAMAPNPEMLICARVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISLYQLMI 151
                 5678889999999***********999************************************************9763 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.029
  MFS_1_like 215 l...........................qvllnilknpeviifllvalilgmswgiienF.........lflYLkel...gasntllGslvalgvvaei 274
                 +                           q+ + ++ n      +  a++lg++  ++++F         +   ++     + ++ ++G +v++g v  +
  EHT99389.1 209 QrvldrlrdtseqakreldeireslkvkQSGWGLFTNNAN---FRRAVFLGILLQVMQQFtgmnvimyyAPKIFEIAgfaNTTQQMWG-TVIVGLVNVL 303
                 3566666666666666666666666666555555555432...233444555555555555555333333222333300044555666.6789999999 PP

  MFS_1_like 275 plfffaeklleklGhvklliiallayilrfllyaii 310
                  +f+    l+++ G    li+++l++++   +++++
  EHT99389.1 304 ATFIA-IGLVDRWGRKPTLILGFLVMAAGMGILGTM 338
                 98865.579****************99988887776 PP

>> SHR3_chaperone  ER membrane protein SH3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.43   8.6e+02     139     178 ..     183     224 ..     177     232 .. 0.69
   2 !   12.8   0.4   2.2e-05     0.043      52     102 ..     315     365 ..     308     380 .. 0.94
   3 ?   -2.3   0.1      0.89   1.8e+03      46      76 ..     407     437 ..     387     442 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.43
  SHR3_chaperone 139 alvLvGVlvLQaG.qwYaerkeqeelee.feeeeaeeaaaka 178
                     +l+L+GV +L    +w a + + +++++ +++ ++++++ak+
      EHT99389.1 183 ILLLIGVFFLPNSpRWLAAKGNFRDAQRvLDRLRDTSEQAKR 224
                     68999**99976526888887777777756666655555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.2e-05
  SHR3_chaperone  52 lhaspplikrilhiviglgliglliklykpsednllFdgaSLvLyvvgvvv 102
                     + + p li   l + +g+g++g +  +   ++ +++F  + L++++vg  +
      EHT99389.1 315 WGRKPTLILGFLVMAAGMGILGTMLHMGIHTPGAQYFAIGMLLMFIVGFAM 365
                     77899******************************************9865 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.89
  SHR3_chaperone  46 lehykflhaspplikrilhiviglgliglli 76 
                     l+ +++l ++p +  + l  v ++ l  +li
      EHT99389.1 407 LTMLNTLGNAPTFWVYALLNVFFIVLTVMLI 437
                     5566777777877777777777777766665 PP

>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.13   2.5e+02      10      43 ..      28      60 ..      19     101 .. 0.68
   2 ?   -3.1   1.9         1     2e+03       5      86 ..     109     186 ..     107     194 .. 0.65
   3 ?   13.0   0.5   1.3e-05     0.026     428     472 ..     388     432 ..     372     458 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.13
       Acatn 10 llqGiPvGLafgtiPflLkslaketsftelgvfs 43
                ll G+ +G+  g++Pf+ k   + t++++  + s
  EHT99389.1 28 LLFGLDIGVIAGALPFIAKD-FNVTAHQQEWIVS 60
                788999**999******998.4445555544444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
       Acatn   5 LvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilll 86 
                 L++  +l G+ vG+a  t P+ L  +a e    + ++ sl  +  ++ il + + D+ +s   G  r W++ v  + +illl
  EHT99389.1 109 LICARVLLGLAVGVASYTAPLYLSEIAPEKI--RGSMISLYQLMITIGILGAYLSDTAFSFT-GNWR-WMLGVITIPAILLL 186
                 7777788899999999999998888776643..34555666666666666666666666543.3333.66666666666555 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.3e-05
       Acatn 428 vgisafhtriaDpvlgGtymtllntlsnlGgtWprllvlslidyf 472
                 +++s+  + ia+ ++g t++t+lntl n    W   l+  +   +
  EHT99389.1 388 ITVSTTTNWIANMIVGATFLTMLNTLGNAPTFWVYALLNVFFIVL 432
                 678899999*******************98888765544333333 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.2   0.00014      0.28       3      84 ..      19     101 ..      15     105 .. 0.78
   2 ?    9.1   5.1   0.00018      0.36     211     386 ..     167     343 ..      99     354 .. 0.61
   3 ?    0.6   0.6     0.067   1.3e+02     481     517 ..     336     372 ..     320     376 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00014
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvlls.llglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgsllla 84 
                 +++l  l+gl+ ++  g++  ++  i k F+ +  +  +i+ss   g+++ ++  +++ +r  r + + +ga+l+ +gsl  a
  EHT99389.1  19 VCFLAaLAGLLFGLDIGVIAGALPFIAKDFNVTAHQQEWIVSSMMFGAAIGAIGSGWMSSRLGRKKSLMAGAILFVIGSLWSA 101
                 44443044455577778888889999999999999999999999999999999999999999999999999999999988766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00018
                 xxxxx..xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 211 WvgaW..WlgflilgvllllaaiplffFPke...lpkkkeerakkkseeesaekkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssv 304
                 + g W   lg + + ++lll+   +ff+P +   l  k + r++++   + ++++e+ k + ++ +++  ++k+    + +    ++  +fl ++l+ +
  EHT99389.1 167 FTGNWrwMLGVITIPAILLLIG--VFFLPNSprwLAAKGNFRDAQRVLDRLRDTSEQAKRELDEIRES-LKVKQSGWGLFTNNANFRRAVFLGILLQVM 262
                 4455520566666666666555..77788886666666666666665554433333333333333333.122222222223344556678888999999 PP

                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 305 feillvaGfitFlpkylEtq.FslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsllllllllfl 386
                  ++++++ ++ + pk  E   F  +++  +++  v+v ++ +l ++++  lv ++  ++  ++ + ++++ + +l+++l + +
  EHT99389.1 263 QQFTGMNVIMYYAPKIFEIAgFANTTQ--QMWGTVIVGLVNVLATFIAIGLVDRWGRKPTLILGFLVMAAGMGILGTMLHMGI 343
                 9999**************762655544..344334444455666777777899999999999999999999999988877665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.067
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 481 allvilRcVkkedksfalGlqlllirllgliPgPiif 517
                 ++++++ +  +    fa+G+ l++i  +++  gP+i+
  EHT99389.1 336 GTMLHMGIHTPGAQYFAIGMLLMFIVGFAMSAGPLIW 372
                 456677788899999***********99*99999987 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00059       1.2      22      77 ..     173     234 ..     165     236 .. 0.61
   2 ?   -2.8   0.2       3.4   6.7e+03      18      41 ..     291     314 ..     288     320 .. 0.50
   3 ?   -1.3   0.1       1.2   2.3e+03      18      40 ..     416     436 ..     412     455 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00059
     DUF4381  22 wlllaalll.llllvlalwllr...rrkrn...rreAlreLaalradeadakellaalselLk 77 
                 w+l ++  + ++ll+++++ l    r+ ++    r+A+r L++lr+++++ak+ l ++ e Lk
  EHT99389.1 173 WMLGVIT-IpAILLLIGVFFLPnspRWLAAkgnFRDAQRVLDRLRDTSEQAKRELDEIRESLK 234
                 3333222.233333333333321332222256699**********999999999999999998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.4
     DUF4381  18 apGwwlllaalllllllvlalwll 41 
                  +G+ ++ ++ +l+ +++++l+ +
  EHT99389.1 291 MWGTVIVGLVNVLATFIAIGLVDR 314
                 567666665555544444443333 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.2
     DUF4381  18 apGwwlllaalllllllvlalwl 40 
                 ap  w+ +++ ++  ++vl ++l
  EHT99389.1 416 APTFWVYALLNVF--FIVLTVML 436
                 7778888844444..34333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 3200.85
//
Query:       EHT99390.1  [L=644]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-48  163.7  19.7    3.5e-48  163.7  19.7    3.3  3  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    3.3e-18   66.4   0.1    3.3e-18   66.4   0.1    3.0  3  dCache_1       Cache domain
  ------ inclusion threshold ------
      0.052   13.8   0.3        3.2    8.1   0.0    2.9  2  Mur_ligase_C   Mur ligase family, glutamate ligase domain
      0.098   12.9  23.8       0.35   11.1   6.4    5.2  5  DUF948         Bacterial protein of unknown function (DUF948)
        1.5    9.3   5.5       0.77   10.2   0.6    2.6  2  DUF2681        Protein of unknown function (DUF2681)
          2    8.2  11.6       0.13   12.1   2.5    2.4  2  NACHT_N        N-terminal domain of NWD NACHT-NTPase
        6.1    6.9  13.3        3.2    7.8   2.6    3.5  4  DUF1664        Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   3.8    0.0033       8.4      98     166 ..     387     452 ..     375     458 .. 0.64
   2 !  163.7  19.7   1.4e-51   3.5e-48       3     171 ..     457     611 ..     455     612 .. 0.98
   3 ?    0.3   0.5      0.21   5.3e+02     138     167 ..     613     642 ..     610     644 .] 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0033
                 ............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  98 iqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqave 166
                 +q +  + v  ++++   v++g+ ++++++ +l   +++++e a+ ++e aa+ e++sa+i   +++ +
  EHT99390.1 387 MQSQLRTMVGQIKDASLSVQQGAGEIASANLNL---SSRTEEQAAALEETAASMEQISAAIRMNADNAQ 452
                 566666777777777777777777777766555...356666666666666666666666666555555 PP

  == domain 2  score: 163.7 bits;  conditional E-value: 1.4e-51
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
   MCPsignal   3 laeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqke 101
                 l+e+a++ A++g++ v++vv++m +i++ss++i di++ i++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+r+  a k+i+ali      
  EHT99390.1 457 LTENATRIANRGETLVDQVVTTMAKIDESSQKIGDITTLINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRTTSAVKDIAALI------ 549
                 67899****************************************************************************************...... PP

                 ........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 102 indsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                         ee+  rve+g+ lv+++g++++e+++av++v+ ++ ei aas+eq+++i +v+ av+e++  
  EHT99390.1 550 --------EESALRVENGVVLVNDAGKTMHEMTNAVSSVQRIIGEIVAASDEQARGIAQVTIAVNEMDGT 611
                 ........9**********************************************************975 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 138 aevadlvqeiaaaseeqsasieevnqavee 167
                 ++ a+lvq+++aas+ +   + + +q+v++
  EHT99390.1 613 QQNAALVQQMSAASSSLEDQARQLAQTVAQ 642
                 566889999999999999999999998887 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.1   1.3e-21   3.3e-18       8     249 .]      48     303 ..      41     303 .. 0.70
   2 ?   -3.2   6.6       2.2   5.7e+03       5      70 ..     427     485 ..     412     610 .. 0.71
   3 ?   -2.1   0.1         1   2.7e+03       9      38 ..     613     642 ..     609     643 .. 0.69

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.3e-21
    dCache_1   8 eeqllglaeqlanniedvldslenlaetlasnpslqdlleepnraneasreslqallksil.ksnpdisgvylvd........................ 81 
                  ++l+++a + a +i+  l+ +   a+ l+++ ++  ++         +++++++ l++++ ++npd+ ++++v+                        
  EHT99390.1  48 ADYLQQIAASHAGQIQQELTHALDAAQNLGQSLAALPAA-------GVTDRNVAHKLMEYAlQKNPDFVSMTVVFepnafdgrdsafagqqgmppegry 139
                 566666666666666666666666666666552222222.......4456666666666555*************999999999998888888844444 PP

    dCache_1  82 .......adGqviassdpssppnleg.......tddpadrdwykealaggggkpvisdpy.vdqt..ggkpvitiavpiyddsgkfiGvlaadldldnl 163
                        +dG                       + +p   ++y  ++++ + ++   +py + ++  ++++ +++a+p+++ + k + v+  d+ l+++
  EHT99390.1 140 awyidrdKDGH--------------FkmnpaldFLQPGAGNYYLLPKETLK-DT-LIEPYsFAYDgaKPEWLTSVATPVMV-NDKLKLVVSSDILLSSI 221
                 44444434444..............2556666788999999**99999996.66.77888655557889************.59*************** PP

    dCache_1 164 qdllsni.klgetgyvfivdsdGniiahpdkdl....lgknlrdelkaqealekalakiesgvssvklngeeylvayapip...tglgWylvvv 249
                 q+ +++i +  +tgy+++++++Gn+i++pd++     + +n+ ++++          + +++   v    e  +++++p++   ++++Wy+ +v
  EHT99390.1 222 QKKINQIkPWQGTGYALLISNSGNVISSPDTSEagkkWPGNVNSTST----------NVTEQYDPVLK--EQAMYTWYPVRvgkSDKPWYVGIV 303
                 *******645779*****************76612224444444432..........22233333333..345678********88*****885 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
    dCache_1   5 eqaeeqllglaeqlanniedvldslenlaetlasnpslqdlleepnra......neasreslqallksilks 70 
                 ++a e++ +++eq++++i    d+++ +a+ l++n            a       e   +++  ++ +i +s
  EHT99390.1 427 AAALEETAASMEQISAAIRMNADNAQ-QATGLTEN------------AtrianrGETLVDQVVTTMAKIDES 485
                 34444555555555555555555544.44444444............2223222223333333444444444 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1
    dCache_1   9 eqllglaeqlanniedvldslenlaetlas 38 
                 +q  +l++q++++ ++  d++++la+t+a+
  EHT99390.1 613 QQNAALVQQMSAASSSLEDQARQLAQTVAQ 642
                 666777777777777777777777777765 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.044   1.1e+02      22      72 ..     503     553 ..     491     557 .. 0.87
   2 ?    8.1   0.0    0.0012       3.2      10      38 ..     556     584 ..     552     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.044
                   -SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHS CS
  Mur_ligase_C  22 hnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasala 72 
                   +n+ +l+aa++a+r   + +   +v+ + + l +rt +  +++++l ++ a
    EHT99390.1 503 TNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRTTSAVKDIAALIEESA 553
                   7999************98888899999999999999999999999888755 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
                   ETTTEEEEEET--SHHHHHHHHHHHHHHS CS
  Mur_ligase_C  10 eadgvtvidDyahnpdslsaalkalreia 38 
                    ++gv++++D + +++++ +a+++++ i 
    EHT99390.1 556 VENGVVLVNDAGKTMHEMTNAVSSVQRII 584
                   5789********************98775 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.83   2.1e+03      69      86 ..      65      82 ..      41      84 .. 0.69
   2 ?   -0.8   0.0      0.75   1.9e+03      30      48 ..     262     280 ..     257     284 .. 0.85
   3 ?   11.1   6.4   0.00014      0.35      27      87 ..     429     499 ..     379     501 .. 0.92
   4 ?    4.8   0.4     0.013        34      27      80 ..     530     583 ..     516     587 .. 0.63
   5 ?    6.8   3.8    0.0032       8.2      18      87 ..     560     629 ..     553     644 .] 0.74

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.83
      DUF948 69 kvdplteavadlgesvse 86
                ++ +  +a+++lg+s+++
  EHT99390.1 65 ELTHALDAAQNLGQSLAA 82
                455566777777777665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.75
      DUF948  30 eaaatieelekqvdpilke 48 
                 ++++t +++++q dp+lke
  EHT99390.1 262 NVNSTSTNVTEQYDPVLKE 280
                 6889999999999999998 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00014
      DUF948  27 tldeaaatieele..........kqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                  l+e+aa++e++           +q+++++++++++ +  ++l+++v   ++k+d+  ++++d+++ ++++
  EHT99390.1 429 ALEETAASMEQISaairmnadnaQQATGLTENATRIANRGETLVDQVVTTMAKIDESSQKIGDITTLINSI 499
                 56778888888888888999999******************************************999876 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.013
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadl 80 
                  ++++a++ ++  k++ ++++e++  +++  +l++d  + + ++ + +++v+ +
  EHT99390.1 530 EVRNLAQRTTSAVKDIAALIEESALRVENGVVLVNDAGKTMHEMTNAVSSVQRI 583
                 445555555555566666666666666666666666666666666666666654 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0032
      DUF948  18 ivvllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                 +v+++ ++kt+ e+++++ ++++ +++i+  +++  + + +++  vne   + ++  + v++++++ s+l
  EHT99390.1 560 VVLVNDAGKTMHEMTNAVSSVQRIIGEIVAASDEQARGIAQVTIAVNEMDGTTQQNAALVQQMSAASSSL 629
                 567788999*************777777777777777777777777776666666666666666666655 PP

>> DUF2681  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6    0.0003      0.77       4      46 ..      22      62 ..      14      74 .. 0.65
   2 ?   -0.0   0.4      0.47   1.2e+03      27      70 ..     422     465 ..     410     475 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0003
     DUF2681  4 lallvgliaavlllvaylswqlkkarkknak..lqaekqqlkvek 46
                + ++vg++a++ l    lswq+ ka+k +a   lq+ +   + ++
  EHT99390.1 22 MTIVVGFAATIGL----LSWQSSKAQKSLAAdyLQQIAASHAGQI 62
                5566666666666....7********7655322555444444444 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.47
     DUF2681  27 karkknaklqaekqqlkvekavaeaevknakvkqkneentrrls 70 
                 + ++++a l++ +  +++  a++  +  na+  +   en++r+ 
  EHT99390.1 422 RTEEQAAALEETAASMEQISAAIRMNADNAQQATGLTENATRIA 465
                 56677888888888888888888888889998888888888875 PP

>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.4      0.21   5.3e+02      39      99 ..     419     479 ..     402     486 .. 0.79
   2 ?   12.1   2.5     5e-05      0.13      42     124 ..     530     616 ..     525     629 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.21
     NACHT_N  39 eeseekeeeseeekrqeqlkrlvekglkrvekkkkakegiaeaaevvlavkdlideavkas 99 
                  +s+++e++   e++ + ++++  +    ++++++a+   ++a+++ +   +l+d++v ++
  EHT99390.1 419 LSSRTEEQAAALEETAASMEQISAAIRMNADNAQQATGLTENATRIANRGETLVDQVVTTM 479
                 4566677777788888889998888888888888888889999999999999999998876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5e-05
     NACHT_N  42 eekeeeseeekrqeqlkrlvekglkrvekkk....kakegiaeaaevvlavkdlideavkaspeaalaWagvclvleiltnpvtaak 124
                 e ++ ++++++  + + +l+e+   rve+      +a ++++e++++v +v+++i+e+v as+e a   a v ++++ +   +++++
  EHT99390.1 530 EVRNLAQRTTSAVKDIAALIEESALRVENGVvlvnDAGKTMHEMTNAVSSVQRIIGEIVAASDEQARGIAQVTIAVNEMDGTTQQNA 616
                 5566778888999999**************9999899999******************************99999987766666555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   7.1e+03      82     103 ..      59      80 ..      46      85 .. 0.59
   2 ?    3.6   1.8     0.025        65      39      98 ..     394     453 ..     377     483 .. 0.67
   3 ?    1.2   0.4      0.14   3.6e+02      46     100 ..     433     493 ..     427     513 .. 0.39
   4 ?    7.8   2.6    0.0012       3.2      35     112 ..     569     642 ..     527     644 .] 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.8
     DUF1664  82 skeikeevtevredlseigedv 103
                 + +i++e+t++ +  +++g+ +
  EHT99390.1  59 AGQIQQELTHALDAAQNLGQSL 80 
                 4456666666655555555544 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.025
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                 +   +++ s +++q   ++a++  +Lssr ++  + l+e+++  ++i++ +    ++ ++
  EHT99390.1 394 MVGQIKDASLSVQQGAGEIASANLNLSSRTEEQAAALEETAASMEQISAAIRMNADNAQQ 453
                 333444445555566677777778888888888888888777777777777666555555 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.14
     DUF1664  46 vskqleqvseslaatkrh......Lssridrvdkkldeqkeiskeikeevtevredlseig 100
                  + ++eq+s++++   ++      L+++  r+ ++ +   +    + ++++e ++++ +i 
  EHT99390.1 433 TAASMEQISAAIRMNADNaqqatgLTENATRIANRGETLVDQVVTTMAKIDESSQKIGDIT 493
                 4555555555554333320000012333333333333333333333333333333333333 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0012
     DUF1664  35 TkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 T + +++av+sv + +     ++ a+ ++ ++ i++v   ++e+  ++++ ++ v++++   s+++++ +++ ++v +
  EHT99390.1 569 TMHEMTNAVSSVQRIIG----EIVAASDEQARGIAQVTIAVNEMDGTTQQNAALVQQMSAASSSLEDQARQLAQTVAQ 642
                 55667777777665554....455555666666777777777777777777777777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 4526.30
//
Query:       EHT99391.1  [L=170]
Description: hypothetical protein CKS_1410 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-17   61.3   0.0    1.7e-16   60.1   0.0    1.5  2  SprT-like        SprT-like family
    2.7e-09   36.8   7.7    4.9e-09   35.9   7.7    1.4  1  Zn_ribbon_SprT   SprT-like zinc ribbon domain
     0.0039   17.2   0.1     0.0065   16.5   0.1    1.5  1  DUF45            Protein of unknown function DUF45
  ------ inclusion threshold ------
      0.044   13.4   0.4      0.044   13.4   0.4    1.7  2  Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain
      0.078   13.3   0.1       0.12   12.7   0.1    1.3  1  DUF3267          Putative zincin peptidase


Domain annotation for each model (and alignments):
>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   4.7e-20   1.7e-16       4     103 ..      21     110 ..      18     124 .. 0.87
   2 ?   -1.2   0.0      0.51   1.8e+03      28      57 ..     123     148 ..     109     156 .. 0.62

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 4.7e-20
   SprT-like   4 lfkklddavfggqaaggvkiiwskrlnttaGranlkratvrhhasIeLseklldsrsedrllntLaHElcHlalfvisgvrnnpHGaeFkawaakveka 102
                  ++++++++ ++  ++++ ++++   +t aG+a+l++      ++I+L++ ll ++++ ++ ++++HEl+Hl+++ ++g r  pHG+e+k+++++v  +
  EHT99391.1  21 ALERANRMLERTYPEPTLVYQQR---GTAAGTAWLEK------WEIRLNPVLLLENQQAFIDEVVPHELAHLLVWKTFG-RVAPHGKEWKWMMETVLGV 109
                 56778888888888888888888...9**********......************************************.**************99544 PP

   SprT-like 103 l 103
                  
  EHT99391.1 110 P 110
                 4 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.51
   SprT-like  28 rlnttaGranlkratvrhhasIeLseklld 57 
                 r +t a r++ ++    hh +++  +++++
  EHT99391.1 123 RSRTFAYRCQCQQ----HHLTVRRHNRVIR 148
                 4466666777777....6666665555555 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   7.7   1.4e-12   4.9e-09       2      35 ..     126     163 ..     125     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.4e-12
  Zn_ribbon_SprT   2 kyvYrCtgCgreythhlsirrhn........YrCrrCkgtLr 35 
                     +++YrC +C+    hhl++rrhn        YrC +C+++L+
      EHT99391.1 126 TFAYRC-QCQ---QHHLTVRRHNrvirgeseYRCVHCGNVLK 163
                     8*****.***...*************************9986 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.8e-06    0.0065     108     178 ..      10      84 ..       3     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.8e-06
       DUF45 108 lrkeakeeleerlaklaaklgvkp..rsvsikdmktrWGsc.sskgkirlnwrLv.kappevidYVvvHElaHll 178
                 l++ + + l ++l++  + l++++  + +  ++  t  G+   +k +irln  L+ + ++ +id Vv HElaHll
  EHT99391.1  10 LQQAVMRALRDALERANRMLERTYpePTLVYQQRGTAAGTAwLEKWEIRLNPVLLlENQQAFIDEVVPHELAHLL 84 
                 4555666777777777777777551144556666778899989999*****87651667889***********97 PP

>> Desulfoferrod_N  Desulfoferrodoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.5       1.5   5.5e+03       7      10 ..     129     132 ..     126     133 .. 0.82
   2 ?   13.4   0.4   1.2e-05     0.044       7      16 ..     153     162 ..     149     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
                      EE-T CS
  Desulfoferrod_N   7 YkCe 10 
                      Y+C+
       EHT99391.1 129 YRCQ 132
                      9**7 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.2e-05
                      EE-TTT--EE CS
  Desulfoferrod_N   7 YkCevCGniV 16 
                      Y+C +CGn+ 
       EHT99391.1 153 YRCVHCGNVL 162
                      ********96 PP

>> DUF3267  Putative zincin peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.3e-05      0.12       5      31 ..      75     101 ..      74     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
     DUF3267   5 vilHEllHglffklfgkkpkkkvkfgi 31 
                 v+ HEl+H+l++k fg+   ++ ++++
  EHT99391.1  75 VVPHELAHLLVWKTFGRVAPHGKEWKW 101
                 689************998877777733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1225.52
//
Query:       EHT99392.1  [L=235]
Description: DNAase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-44  153.0   8.5    1.7e-44  152.3   8.5    1.3  1  Endonuclease_1  Endonuclease I


Domain annotation for each model (and alignments):
>> Endonuclease_1  Endonuclease I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   8.5   9.2e-49   1.7e-44      62     232 ..      59     232 ..      14     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 9.2e-49
  Endonuclease_1  62 t.......nqcg..stkqegec..ynrEHivPasvfgeqrq.................pmesDahhvvptdgevNadRsnfpygevatatytskn 128
                             + cg   +k+ +++  +++EH++Pa+ fg+qrq                  me+D+h++ p++gevN+dR+nf y+++        n
      EHT99392.1  59 GkkgepdlSSCGyqPRKNANRAarIEWEHVMPAWEFGHQRQcwqnggrkncskdadyrHMETDLHNLQPAIGEVNGDRGNFAYSQW--------N 145
                     144556556699765666666679**************************************************************........8 PP

  Endonuclease_1 129 gskkpenlgssnva.dykstvfEPidefkGdiARallYmatrYenkiakaqskvldgssdqvfektllnlllkWhkqdPvsakEiernnaiaavq 222
                     g +  +++g+++++ d+k++  EP +  +G+iAR+++Ym ++Y ++++++q                 +l+ +W+k +Pvs++E+er+++ia+vq
      EHT99392.1 146 GTE--KQYGQCSMHiDFKNKQAEPPERARGAIARTYFYMRDQYHLRLSRQQ----------------TQLFTAWNKLYPVSQWECERDQRIARVQ 222
                     988..9*********************************************................99************************** PP

  Endonuclease_1 223 gnrNPfidhp 232
                     gn+NP++ ++
      EHT99392.1 223 GNHNPYVLEA 232
                     ******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1752.23
//
Query:       EHT99393.1  [L=243]
Description: ribosomal RNA small subunit methyltransferase E [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-73  244.3   0.1    1.1e-72  244.1   0.1    1.0  1  Methyltrans_RNA  RNA methyltransferase
  ------ inclusion threshold ------
       0.12   12.5   0.2       0.25   11.6   0.2    1.6  1  zf-RING_7        C4-type zinc ribbon domain


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1   0.1   1.2e-76   1.1e-72       2     225 ..      19     236 ..      18     237 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.1 bits;  conditional E-value: 1.2e-76
                      EEEHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE- CS
  Methyltrans_RNA   2 sltdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskkkvtvkilekeeenkespekitlaqalpkgdklelilqkatElGvseivplis 95 
                      +l+d+ ++H+ +VlR++ g++++lfdg++  + aei++++kk+v+v+i  +++ ++esp  ++l q++++g+k+e+++qk++ElGv+ i+pl+s
       EHT99393.1  19 TLDDDASNHVGRVLRMTSGQHLELFDGSNLTFAAEITQVDKKRVKVSITTSQTDDRESPLYLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFS 112
                      799******************************************************************************************* PP

                      TTSSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEEEEEEETTSSEBGGGSSHCCHTHHCSEEEEEE--TT--- CS
  Methyltrans_RNA  96 ersvvkldekkkdkklerwqkilieAaeQsgrtrlpevkepislkelleelkeadlklildeeekksleelsekkkelkevkvlliiGPEGGfs 189
                      er+ vkld ++ +kk+++wqki+i+A+eQ+gr+r+pe++++++l+ +++e ++  + l l++++++s+++l +  +     +v l+iGPEGG+s
       EHT99393.1 113 ERCGVKLDAERLAKKIQQWQKIAIAACEQCGRNRVPEIRPAMTLEAWCSEAESGLK-LNLHPRASHSINTLPQPVE-----RVRLLIGPEGGLS 200
                      ****************************************************9866.**********999999887.....8************ PP

                      HHHHHHHHHTTCEEEB-SSS---HHHHHHHHHHHHH CS
  Methyltrans_RNA 190 ekEiellkeagfkpvsLgpriLRteTAalaalsalq 225
                      ++Ei+++ ++gf+ + Lgpr+LRteT al+a++alq
       EHT99393.1 201 AEEIAMTAQHGFTDILLGPRVLRTETTALTAITALQ 236
                      **********************************98 PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.8e-05      0.25       5      31 ..     115     144 ..     112     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
                 T--B--CCHHHHHCCS.TB..-EE-TTT-- CS
   zf-RING_7   5 Chmelppqvlselrag.de..vvtCpeCGR 31 
                 C+++l+ ++l++  ++  +  ++ C++CGR
  EHT99393.1 115 CGVKLDAERLAKKIQQwQKiaIAACEQCGR 144
                 99******99999888766557*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1871.92
//
Query:       EHT99394.1  [L=316]
Description: glutathione synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-79  265.9   0.0    1.4e-79  265.5   0.0    1.2  1  GSH-S_ATP       Prokaryotic glutathione synthetase, ATP-grasp
      8e-48  161.5   0.0    1.4e-47  160.7   0.0    1.4  1  GSH-S_N         Prokaryotic glutathione synthetase, N-termina
    2.8e-10   40.1   0.0    3.9e-10   39.6   0.0    1.2  1  RimK            RimK-like ATP-grasp domain
    6.9e-08   32.0   0.0      1e-07   31.5   0.0    1.2  1  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.087   12.1   0.0       0.26   10.5   0.0    1.7  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp
      0.093   12.8   0.0       0.12   12.4   0.0    1.4  1  ATP-grasp_3     ATP-grasp domain


Domain annotation for each model (and alignments):
>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.5   0.0   4.8e-83   1.4e-79       1     173 [.     124     296 ..     124     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 265.5 bits;  conditional E-value: 4.8e-83
                 TTGGGGGGCCCS--EEEES-HHHHHHHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEE CS
   GSH-S_ATP   1 eKlaalsfpelipktlvskdkeeirafleeqgdvilKPldgkgGegvfrvkksdpnlksilellteegkepviaqrylpeikeGDkRillvdGepigya 99 
                 eKl++++f+e++p+tlv+++k+++raf++e+gdvi+KPldg+gG+++frvk++dpn+++i e+lte+++++++aq+ylp+ikeGDkR+l+vdGep++y+
  EHT99394.1 124 EKLYTAWFAEFTPDTLVTRSKQQLRAFWQEHGDVIMKPLDGMGGASIFRVKHDDPNFGVIAETLTEHESRYCMAQNYLPAIKEGDKRVLVVDGEPVPYC 222
                 8************************************************************************************************** PP

                 EEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEETTEEEEEE-SS---HHHHHHH CS
   GSH-S_ATP 100 laRvpaegevRsnlaaggraeatelterdreiaeelapkLkekGllfvGlDvigdkltEinvtsPtgireieel 173
                 laR+p+ ge+R+nlaaggr+ea++l+e+d+ ia++++p+Lk+kGl+fvGlD+igd+ltE+nvtsPt+ireie++
  EHT99394.1 223 LARIPQGGETRGNLAAGGRGEARPLSESDWAIARKVGPTLKAKGLIFVGLDIIGDRLTEVNVTSPTCIREIEAA 296
                 ***********************************************************************975 PP

>> GSH-S_N  Prokaryotic glutathione synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.0   4.7e-51   1.4e-47       1     119 []       2     120 ..       2     120 .. 0.99

  Alignments for each domain:
  == domain 1  score: 160.7 bits;  conditional E-value: 4.7e-51
     GSH-S_N   1 lklafvmdplesikikkDttfalmleaqarghevfvleaadLslregkatararkvevkedkedwyelgeeeelaleeldvvlmRkDPPfdmeylyaty 99 
                 +kl+fvmdp++si+ikkD++fa++leaq+rg+e++++e++dLslr+g a ar+r ++v++++++wy++g+e++++l++ldvvlmRkDPPfd+e++y ty
  EHT99394.1   2 IKLGFVMDPIASINIKKDSSFAMLLEAQRRGYEIHYMEMNDLSLRGGVAFARTRLLSVEQNAASWYQFGSEQQIKLADLDVVLMRKDPPFDTEFIYCTY 100
                 589*******************************************************99999************************************ PP

     GSH-S_N 100 lLelaeregvlvvNdpralR 119
                 +Le+ae++g+l+vN+p++lR
  EHT99394.1 101 ILERAEEQGTLIVNKPQSLR 120
                 *******************9 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.3e-13   3.9e-10      18     186 ..     135     307 ..     132     309 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.3e-13
                 ---EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.GGG--....EEEEE--SS-SEEEEEEEETTEEEE.EEEEE--SS CS
        RimK  18 vpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.lkeai....lvqeyieeaenediRvlvvddevva.alrrvskeG 110
                 +p t ++r++++++++ ++ +    v++K + g  G  ++  k+ +    v+   l+e+     + q+y+   ++ d Rvlvvd+e v   l r+ + G
  EHT99394.1 135 TPDTLVTRSKQQLRAFWQEHG---DVIMKPLDGMGGASIFRVKHDDPNFGVIAEtLTEHEsrycMAQNYLPAIKEGDKRVLVVDGEPVPyCLARIPQGG 230
                 578889999999999998885...8******************999877776554666545677*********************9775389******* PP

                 S----TTTT-EEEE----HHHHHHHHHHH...HHCT-SEEEEEEEEETTEEEEEEEESS--SHHHHHHHT--HHHHHHH CS
        RimK 111 dFRsnlhrGgvaeklqlseeekelAikaa...kamelvvaGvDllrakrgllvlEvnsspglekiektlgidiakklie 186
                 + R nl  Gg +e   lse +  +A k+    ka +l+++G+D++     l  ++v s   +++ie    + i   l++
  EHT99394.1 231 ETRGNLAAGGRGEARPLSESDWAIARKVGptlKAKGLIFVGLDIIGDR--LTEVNVTSPTCIREIEAAFPVSITGMLMD 307
                 ***************************97333667899******9643..44445555556666666666666666555 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.5e-11     1e-07      25      88 ..     131     194 ..     121     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.5e-11
  ATPgrasp_YheCD  25 lrpyLPetellesledleemlekyksvylKpanGskGkgilriekeekellllsrekkkkkkkr 88 
                     ++++ P+t   +s+++l+++ +++++v++Kp +G++G  i+r+++++ ++ +  ++ ++++++ 
      EHT99394.1 131 FAEFTPDTLVTRSKQQLRAFWQEHGDVIMKPLDGMGGASIFRVKHDDPNFGVIAETLTEHESRY 194
                     67899****************************************9888888887777744443 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.7e-05      0.26      48      84 ..     143     177 ..     112     214 .. 0.79
   2 ?   -1.2   0.0      0.31   9.3e+02     144     181 ..     209     240 ..     205     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.7e-05
  ATPgrasp_ST  48 eiseleafvkeleegvviKpakgsgGkGilvitered 84 
                  + ++l+af +e+  +v++Kp +g+gG  i  +++ +d
   EHT99394.1 143 SKQQLRAFWQEH-GDVIMKPLDGMGGASIFRVKH-DD 177
                  56899*******.66************9988755.44 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.31
  ATPgrasp_ST 144 iRvitflkdkkvevmlamlRlgtkaskvDgkaNlhqGg 181
                   Rv ++   ++ +v + + R++ +++++    Nl++Gg
   EHT99394.1 209 KRVLVV---DGEPVPYCLARIPQGGETRG---NLAAGG 240
                  599999...5555555699***9999666...999998 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.1e-05      0.12      23      62 ..     146     185 ..     122     286 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.1e-05
                  .-EESS--SSSEEEEESS-------B--SS--TTE..... CS
  ATP-grasp_3  23 eaeeleeeekklvvKprdGaggesvrvveekeeaeaaiee 62 
                  +   + +e   +++Kp dG+gg s++ v++++ ++  i+e
   EHT99394.1 146 QLRAFWQEHGDVIMKPLDGMGGASIFRVKHDDPNFGVIAE 185
                  445555668899**************99998766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2729.78
//
Query:       EHT99395.1  [L=187]
Description: uncharacterized DUF179 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-50  171.1   0.0    1.9e-50  171.0   0.0    1.0  1  DUF179    Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   1.1e-54   1.9e-50       1     160 []      12     174 ..      12     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 1.1e-54
                 TTSTTTTSTTEEEEEEEEETTEEEEEESSSEE.EEEHHHHHHHGCTSSSST-CHHH...SEEEES-SEEEEEEEEEEES...SSSEEECSTTEEEE-SS CS
      DUF179   1 psledpnFersVvlllehdeegalGlvlNrpl.eltlkelleelleleaepatekl...ssvylGGPveqdrlfvlhsle.elessleisdglylttsl 94 
                 p+l dp F+rsVv+++eh+eega+Gl++N+p+ +lt++ +l++ l++++e++ +++   ++v+ GGP+++dr+f+lhs + + +ss+++sd++++tts+
  EHT99395.1  12 PALLDPFFKRSVVYICEHNEEGAMGLIINKPMeNLTVEGILKK-LKIAEENRDPAInldKPVFSGGPLAEDRGFILHSAQrTFTSSIRVSDNTVITTSR 109
                 7899****************************889*******9.556656566566788*******************66799**************** PP

                 HHHHHHCSTTSCSSEEEEEEEEEECTTHHHHHHHTTSEEEEE-.HHHHHCTSTSSHHHHHHHHCCT CS
      DUF179  95 dilealagkagpeklrvflGyagWeagQLeeEieegaWlvvpassedllfetppeelWeealrrlG 160
                 d+lea+ +  +p++++v+lGy++We++QLe+E+ e+aWl++pa+s+ +lf+tp +e+W+ea r++G
  EHT99395.1 110 DVLEAIGTADQPDHVLVALGYCAWEKDQLENELMENAWLTTPANSN-ILFQTPIAERWREAARSIG 174
                 ******99***********************************666.****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1510.58
//
Query:       EHT99396.1  [L=138]
Description: putative Holliday junction resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-43  148.2   0.0    1.9e-43  148.1   0.0    1.0  1  RuvX             Holliday junction resolvase
  ------ inclusion threshold ------
      0.063   13.2   0.0       0.12   12.2   0.0    1.4  1  Erythro-docking  Erythronolide synthase, docking


Domain annotation for each model (and alignments):
>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   2.1e-47   1.9e-43       2     134 ..       5     136 ..       4     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 2.1e-47
                 -EEEEEESSSEEEEEEE-S--SS---EEEEE---HHHHHHHHHHHHHHTT--EEEEE------SSS---SSTTHHHHHHHHHT..T-EEEEE--S---- CS
        RuvX   2 rilglDvGtkriGvAvsdplgilaspletierkskekdleelkelvkeeeveeiVvGlPlnldgsegesakkvrkfaeeLakrlkklpvelvDErlttv 100
                 ++lg+D+Gtk iGvAv+++l+  a+pl+ ++++++++d+ ++++l+ke++++ +VvGlPln+dgse++ ++++rkfa++L+ r+ +++vel DErl+tv
  EHT99396.1   5 TLLGFDFGTKSIGVAVGQQLTGSARPLSALKAQDGTPDWLQIEKLLKEWQPDFVVVGLPLNMDGSEQPLTARARKFANRLHGRF-GIRVELQDERLSTV 102
                 68*******************************99************************************************8.************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RuvX 101 eaerilresglsrkkrkkvvDklaAviiLqsyLd 134
                 ea+  l e+g  r+ +k+ vD+++A+iiLq+++d
  EHT99396.1 103 EARAGLFERGGYRALNKGSVDSQSAAIILQDWFD 136
                 *********************************9 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.12       6      43 ..      18      54 ..      14      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                     STTHHHHHHHHHHHHHHTTSS-THHHHHHHHHHHHHHH CS
  Erythro-docking  6 vdvGdRLDeLekaLeaLsdedGhdDvGaRLeaLLRRWn 43
                     v vG+ L    + L aL ++dG  D    +e LL+ W+
       EHT99396.1 18 VAVGQQLTGSARPLSALKAQDGTPDWL-QIEKLLKEWQ 54
                     89***********************86.59*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1106.37
//
Query:       EHT99397.1  [L=331]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-39  135.9   0.2    1.6e-39  135.6   0.2    1.1  1  T2SSE           Type II/IV secretion system protein
    1.5e-05   24.1   0.1    2.8e-05   23.2   0.1    1.4  1  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
    7.4e-05   22.6   0.7    0.00022   21.0   0.7    2.0  1  AAA_30          AAA domain
    0.00011   21.8   0.1    0.00023   20.9   0.1    1.4  1  AAA_29          P-loop containing region of AAA domain
    0.00015   22.3   0.0    0.00028   21.5   0.0    1.5  1  AAA_23          AAA domain
    0.00016   21.9   0.0     0.0003   21.1   0.0    1.5  1  AAA_22          AAA domain
    0.00021   21.7   0.6    0.00049   20.5   0.5    1.7  1  AAA_16          AAA ATPase domain
    0.00032   20.7   0.0    0.00046   20.2   0.0    1.3  1  ResIII          Type III restriction enzyme, res subunit
    0.00037   19.9   0.0    0.00076   18.9   0.0    1.5  1  FtsK_SpoIIIE    FtsK/SpoIIIE family
     0.0013   18.0   0.1     0.0025   17.1   0.1    1.4  1  Zeta_toxin      Zeta toxin
     0.0017   17.5   0.0     0.0039   16.3   0.0    1.7  1  Dak1_2          Dihydroxyacetone kinase family
     0.0022   18.5   0.0     0.0049   17.4   0.0    1.6  1  ABC_tran        ABC transporter
     0.0031   17.7   0.0     0.0051   16.9   0.0    1.3  1  DUF87           Helicase HerA, central domain
     0.0045   16.9   0.6       0.33   10.8   0.1    2.5  2  NTPase_1        NTPase
     0.0065   16.1   0.1      0.031   13.9   0.0    2.0  2  SRP54           SRP54-type protein, GTPase domain
     0.0069   16.3   0.1      0.065   13.1   0.0    2.5  2  NACHT           NACHT domain
     0.0082   16.1   0.2      0.027   14.5   0.2    1.8  1  AAA_5           AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.016   15.2   0.4      0.039   13.9   0.0    1.8  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.016   15.5   0.4      0.043   14.2   0.4    1.9  1  AAA_19          AAA domain
      0.029   14.0   0.6      0.071   12.7   0.6    1.7  1  AAA_25          AAA domain
      0.038   13.7   0.0      0.069   12.9   0.0    1.4  1  PRK             Phosphoribulokinase / Uridine kinase family
      0.043   13.0   0.0      0.084   12.0   0.0    1.4  1  DUF815          Protein of unknown function (DUF815)
      0.047   13.1   0.0      0.091   12.2   0.0    1.5  1  SMC_N           RecF/RecN/SMC N terminal domain
      0.058   13.8   0.1       0.14   12.5   0.0    1.7  1  AAA             ATPase family associated with various cellula
      0.061   12.6   0.0       0.09   12.0   0.0    1.3  1  DUF2075         Uncharacterized conserved protein (DUF2075)
      0.065   12.4   0.0       0.11   11.6   0.0    1.3  1  DAP3            Mitochondrial ribosomal death-associated prot
      0.077   12.5   0.0       0.14   11.6   0.0    1.4  1  AAA_7           P-loop containing dynein motor region
      0.086   12.8   0.0       0.15   12.0   0.0    1.3  1  Microtub_bd     Microtubule binding
        0.1   12.8   0.8       0.19   12.0   0.8    1.6  1  AAA_28          AAA domain
        0.1   13.1   0.0       0.18   12.3   0.0    1.6  1  AAA_18          AAA domain
       0.13   11.4   0.0       0.16   11.1   0.0    1.2  1  G-alpha         G-protein alpha subunit
       0.14   12.2   0.0       0.27   11.3   0.0    1.5  1  AAA_14          AAA domain
        0.2   11.6   0.0       0.32   10.9   0.0    1.3  1  Rad17           Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.2     3e-42   1.6e-39      70     271 ..      71     271 ..      12     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 3e-42
       T2SSE  70 darlp.ekgvrlrvvllPvvagealviRkksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks.derivtvEDp 166
                 d +l+   g rlr++l    +g +l++R+ +++  tl dl++     e ++++l+k     glil++G+TgsGK+t+l a++  in +  ++i+t+EDp
  EHT99397.1  71 DFALTlAAGQRLRANLFMQRNGLSLALRNIASECPTLTDLRVP----EGVQALLKKR---DGLILITGATGSGKSTTLAAMVDAINRQqARHILTLEDP 162
                 3333367888899988888888999999888888889888765....6778899999...**************************997899******* PP

       T2SSE 167 vEiqleganqvqlnakkakv...tfadllraaLRlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgae....veaaelks 257
                 +E   +  +q+ +++++++v    f+++l+aaLR +PD+im+GE+Rd +t++  l A++T Hl+ l+TlH++ a++a++rL +        + +++l+s
  EHT99397.1 163 IEFI-HRSQQSLIQQREVGVhcrSFSQGLKAALREDPDVIMLGELRDSDTIRQaLTAAETDHLV-LATLHTRGAVQAVDRLVDVFPAeeknLVRTQLAS 259
                 **85.555667777775555223699*************************999**********.******************98666889999999** PP

       T2SSE 258 silavvdivvrlvr 271
                 s++av  i+++lv 
  EHT99397.1 260 SLNAV--IAQQLVP 271
                 *****..9***986 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   5.2e-08   2.8e-05      17      48 ..     126     157 ..     114     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.2e-08
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargdraiv 48 
                     ili+G+tGsGK+++l ++++ai++++ r+i 
     EHT99397.1 126 LILITGATGSGKSTTLAAMVDAINRQQARHIL 157
                    589**************************996 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.7   4.1e-07   0.00022      10      49 ..     116     156 ..     114     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.1e-07
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalreaweaa.ggrv 49 
                 v+all+++d + ++tG+ G+GK+t+l+a+++a++++  +++
  EHT99397.1 116 VQALLKKRDGLILITGATGSGKSTTLAAMVDAINRQqARHI 156
                 7899***************************9999844444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   4.2e-07   0.00023      20      43 ..     122     145 ..     114     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.2e-07
      AAA_29  20 dlkgatlltGpsGsGKSTllDAiq 43 
                 +++g +l+tG++GsGKST l A+ 
  EHT99397.1 122 KRDGLILITGATGSGKSTTLAAMV 145
                 345699************887764 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.1e-07   0.00028      19      42 ..     124     147 ..     107     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.1e-07
      AAA_23  19 kgltlItGpNGaGKTTildAikla 42 
                 +gl lItG +G+GK+T l A+  a
  EHT99397.1 124 DGLILITGATGSGKSTTLAAMVDA 147
                 79*****************98665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.5e-07    0.0003       3      69 ..     122     199 ..     120     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.5e-07
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsst.sskdllrellralglelk 69 
                 k++g++++tG +G+GK+t+l+ +++  +++ +a++           +r+++ +++  + +   +++ + l  al ++ +
  EHT99397.1 122 KRDGLILITGATGSGKSTTLAAMVDAINRQ-QARHiltledpiefiHRSQQSLIQQREVGvHCRSFSQGLKAALREDPD 199
                 4789*********************98544.444458877777776555555555555555555555555555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.5     9e-07   0.00049      21     107 ..     121     231 ..     114     285 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 9e-07
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipy.sa.laqalareellrqlldeaesaeleawrekleeala......... 106
                 + r +l+l++G+ G+GKs+ + +  +a++++  + i++ ++  ++   i++ ++ l+q+ +    +r   + +++a++e+ +   +++l+         
  EHT99397.1 121 KKRDGLILITGATGSGKSTTLAAMVDAINRQqaRHILTLEDPIEF---IHRsQQsLIQQREVGVHCRSFSQGLKAALREDPDVIMLGELRdsdtirqal 216
                 445589*************************55233344444444...333322344444444444444444444444444444444444333322211 PP

      AAA_16 107 ..............a 107
                                
  EHT99397.1 217 taaetdhlvlatlhT 231
                 122223333333330 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.5e-07   0.00046      17      75 ..     118     174 ..      88     257 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 8.5e-07
                 ......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGG CS
      ResIII  17 eklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefk 75 
                 + lk krd  +li  aTG+GK+ ++a++++++ +++  +++l l + ++ + + ++ + 
  EHT99397.1 118 ALLK-KRDGLILITGATGSGKSTTLAAMVDAINRQQA-RHILTLEDPIEFIHRSQQSLI 174
                 3344.8888999********************99755.699999999988888886662 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.4e-06   0.00076      39      60 ..     114     145 ..      83     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
                   -...........SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  39 a..........shllvaGatgsGKStalntLi 60 
                   +          + +l+ GatgsGKSt+l +++
    EHT99397.1 114 EgvqallkkrdGLILITGATGSGKSTTLAAMV 145
                   44444444445779****************98 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   4.7e-06    0.0025      15     116 ..     123     218 ..     117     232 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.7e-06
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniivegtlrspdvvkk 112
                 r  lil+ G++G+GKs++++++ d+++ +q + +   +D +   h+  +++++       + +   ++ +++ l ++a+ +  ++i+ g lr+ d++++
  EHT99397.1 123 RDGLILITGATGSGKSTTLAAMVDAINrQQARHILTLEDPIEFIHRSQQSLIQ------QREVGVHCRSFSQGL-KAALREDPDVIMLGELRDSDTIRQ 214
                 55689*********************966666666677888888877666666......334444444444443.334444566666666666666666 PP

  Zeta_toxin 113 laea 116
                 + +a
  EHT99397.1 215 ALTA 218
                 5555 PP

>> Dak1_2  Dihydroxyacetone kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.1e-06    0.0039     106     217 ..     114     227 ..      56     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.1e-06
      Dak1_2 106 eglaelfkslgvdevieggqt.mnPste..dllkaiekvnakevivLpnnkniilaaeqaaelaedknvvviptktivqGlaallvfdper.slee..n 198
                 eg++ l+k+      i+g  t +  st   ++++ai++ +a++++ L +  ++i+  +  ++l+++++ v +++++ +qGl a+l +dp+   l+e  +
  EHT99397.1 114 EGVQALLKKRDGLILITG-ATgSGKSTTlaAMVDAINRQQARHILTLEDPIEFIHRSQ--QSLIQQRE-VGVHCRSFSQGLKAALREDPDViMLGElrD 208
                 677777755442344444.44455555556******************9999999999..56775554.468*****************9865554226 PP

      Dak1_2 199 veamaeaakavktgevtyA 217
                  +++++a+ a +t+ +  A
  EHT99397.1 209 SDTIRQALTAAETDHLVLA 227
                 7778888887777776666 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     9e-06    0.0049      13      61 ..     126     179 ..     119     252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9e-06
                 EEEEEESTTSSHHHHHHHHTTSS--SEE.EEEETTCEGGG....B-HHHCCHCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx....xxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteG.eilldgkdlke....qeleslrkei 61 
                 ++ i+G +G+GKSt l+++    + ++  +il  +++++     q+  + ++e+
  EHT99397.1 126 LILITGATGSGKSTTLAAMVDAINRQQArHILTLEDPIEFihrsQQSLIQQREV 179
                 688**************9999888755405544466666644443333333333 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.4e-06    0.0051      27      56 ..     128     157 ..     117     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.4e-06
       DUF87  27 AilgsTGsGKSntvavLleellekkgatil 56 
                 +i g TGsGKS+t a +++ + +++  +il
  EHT99397.1 128 LITGATGSGKSTTLAAMVDAINRQQARHIL 157
                 799*****************9965555665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00061      0.33       2      27 ..     127     152 ..     126     156 .. 0.90
   2 ?    4.1   0.0      0.07        38      63     145 ..     168     242 ..     152     264 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00061
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 ++iTG  G+GK+T +  +++++++++
  EHT99397.1 127 ILITGATGSGKSTTLAAMVDAINRQQ 152
                 79*****************9998876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.07
                 TT---SSEETTEEE-HHHHHHHHHHHHHHHHHHH-EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHH CS
    NTPase_1  63 veakreprvgkyvvdvesfeelalealrkalseadviviDEiGkmElkskkfkeaveevLksekpvlavihrrkdlalveeir 145
                 +++++ ++  +  v+  sf++   +alr   +++dvi++ E       s ++++a++ + +++  vla++h r   + v+++ 
  EHT99397.1 168 RSQQSLIQQREVGVHCRSFSQGLKAALR---EDPDVIMLGEL----RDSDTIRQALT-AAETDHLVLATLHTRGAVQAVDRLV 242
                 4457777777888888888888777777...48899988765....56667777765.55788899*****996544444443 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.7e-05     0.031       3      36 ..     126     159 ..     124     183 .. 0.90
   2 ?   -0.6   0.1       1.5   8.4e+02      19      61 ..     255     295 ..     249     320 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.7e-05
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllva 36 
                 +il+ G +G+GK ttla + + +++++ + +l  
  EHT99397.1 126 LILITGATGSGKSTTLAAMVDAINRQQARHILTL 159
                 589*********************9988887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
                 HHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE CS
       SRP54  19 aKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik 61 
                 ++La  l++   + l+ a+D  R + +e L +    ++  +i+
  EHT99397.1 255 TQLASSLNAVIAQQLVPACDEKRTGLFEVLMATSAVVN--LIR 295
                 56788888888888999999999999998876655555..454 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00012     0.065       2      31 ..     126     155 ..     125     207 .. 0.86
   2 ?    0.2   0.0       1.1   6.1e+02     103     116 ..     251     264 ..     234     328 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpq 31 
                 l++++G+ GsGK+t l+ +++a+ +++  +
  EHT99397.1 126 LILITGATGSGKSTTLAAMVDAINRQQARH 155
                 689*******************99988665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                 ......HHHHHCTT CS
       NACHT 103 qpvrtlLselirkk 116
                 + vrt L++ +++ 
  EHT99397.1 251 NLVRTQLASSLNAV 264
                 44444444443332 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   4.9e-05     0.027       2     108 ..     127     238 ..     126     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.9e-05
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT-.....-HHHHH--B--.........--------.G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdt.....teedlkgrreikngttslvdsplvraar.egeilvlDEveraesevlnsLlslleer 92 
                 +l+ G++G+gKs+    +  a+  ++  ++  l + +     +++ l+++re+ + + +   + l+ a r  +++++l+E+   +s+++   l+  e++
  EHT99397.1 127 ILITGATGSGKSTTLAAMVDAInrQQARHILTLEDPIefihrSQQSLIQQREV-GVHCRSFSQGLKAALReDPDVIMLGELR--DSDTIRQALTAAETD 222
                 5899******************976777777777655222326899******9.555555556677788889**********..9************** PP

                 EEE..-SSSEEE---. CS
       AAA_5  93 rllleeggelvkaknd 108
                 +l l+ ++++  +++ 
  EHT99397.1 223 HLVLATLHTRGAVQAV 238
                 9999998888777664 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       8.9   4.8e+03      87     104 ..      72      89 ..      70      91 .. 0.86
   2 ?   13.9   0.0   7.2e-05     0.039       5      65 ..     126     187 ..     122     195 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.9
  Ploopntkinase3  87 ydlllaeGarlankrfld 104
                     + l la G rl  + f++
      EHT99397.1  72 FALTLAAGQRLRANLFMQ 89 
                     7899*******9998886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.2e-05
  Ploopntkinase3   5 liylvGqPGaGkstlmaeltkgfdrskveqeeetvphdvlvdrttGevv.gaelGkrreafs 65 
                     li + G+ G+Gkst +a++ ++++r++ ++  ++    ++++r +   +   e+G++  +fs
      EHT99397.1 126 LILITGATGSGKSTTLAAMVDAINRQQARHILTLEDPIEFIHRSQQSLIqQREVGVHCRSFS 187
                     899**********************9988444444444555555555441457777777776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   7.8e-05     0.043       8      40 ..     122     154 ..     116     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.8e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggv 40 
                  +++++l+t+  G+GK+++l ++v  +++++ +
  EHT99397.1 122 KRDGLILITGATGSGKSTTLAAMVDAINRQQAR 154
                 567899******************999988854 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   0.00013     0.071      32     107 ..     123     194 ..     111     252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal.......rddarllvld 107
                 +++l+l++Ga+g+GK+t +  ++ a+ + +           +  ++ +Ed+ + ++r  + + +++       ++ ++l +  
  EHT99397.1 123 RDGLILITGATGSGKSTTLAAMVDAINRQQ-----------ARHILTLEDPIEFIHRSQQSLIQQRevgvhcrSFSQGLKAAL 194
                 689***************999998887533...........455677777775555555555555566666654455554444 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.069       2      29 ..     127     154 ..     126     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
         PRK   2 IgvagsSGaGkttvarklekifgrekvk 29 
                 I ++g+ G+Gk+t+ ++++++++r++ +
  EHT99397.1 127 ILITGATGSGKSTTLAAMVDAINRQQAR 154
                 88*********************88766 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015     0.084      56      88 ..     127     159 ..     114     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlieve 88 
                 +L++Ga G+GKS+++ a++ ++++++ r i   
  EHT99397.1 127 ILITGATGSGKSTTLAAMVDAINRQQARHILTL 159
                 89*********************9997766544 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017     0.091      20      83 ..     120     183 ..     107     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
                 EETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTT.TCHCCCCCC--BTTCSSTTEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  20 lpfsksftaivGpNGSGKsnlldAilFvLGersakkl.rseklsdlihkskekasvkkaeveitf 83 
                 l+  +++  i+G+ GSGKs  l A+   +  ++a+++   e+  + ih+ ++++ +++ ev ++ 
  EHT99397.1 120 LKKRDGLILITGATGSGKSTTLAAMVDAINRQQARHIlTLEDPIEFIHR-SQQSLIQQREVGVHC 183
                 566678899****************999999998885145667788887.777777877777765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00027      0.14       1      73 [.     127     212 ..     127     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00027
                 EEEESSTTSSHHHHHHHHHHHHTHE.............EEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgve.............fleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaks 73 
                 +l++G  G GK+++  a++  ++++             f+  s  +l+ +  vg   +++++ +k+a ++  p ++++ E+    + 
  EHT99397.1 127 ILITGATGSGKSTTLAAMVDAINRQqarhiltledpieFIHRSQQSLIqQREVGVHCRSFSQGLKAALRED-PDVIMLGELRDSDTI 212
                 6899*****************86333334444444444**********7779************9998887.9*****998655555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.09       3      35 ..     126     156 ..     124     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertav 35 
                 ++l+tG++G+GK+  l +++ ++  ++++ +++
  EHT99397.1 126 LILITGATGSGKSTTLAAMVDAI--NRQQARHI 156
                 79********************9..33333333 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00021      0.11      24      70 ..     125     172 ..     115     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
                 -EEEEE-SSSSSTTTTHHHHH.HHGGGS--EEEEES-GGGGTSS-S-- CS
        DAP3  24 krlvltGekgsGKSvlLlqal.ayAlekgwvvlhvpeaedlvngttey 70 
                   +++tG +gsGKS++L+ ++ a+  ++   +l++ ++ ++++++++ 
  EHT99397.1 125 GLILITGATGSGKSTTLAAMVdAINRQQARHILTLEDPIEFIHRSQQS 172
                 55789************9665233334467899999999999988765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00026      0.14      25      62 ..     115     153 ..     103     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
       AAA_7  25 llelllknkk.pvllvGptGtGKtviikdllkkldkeky 62 
                  ++ llk++   +l++G tG+GK++++  +++++++++ 
  EHT99397.1 115 GVQALLKKRDgLILITGATGSGKSTTLAAMVDAINRQQA 153
                 5556665554157999************99999986654 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00028      0.15      75     109 ..     116     154 ..     112     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
                  HHHHHTT--EEEEEEES....................ST CS
  Microtub_bd  75 vqsaldgynvcifaygqTGsGKtyTmeg....eeeeagm 109
                  vq  l++ +  i+ +g TGsGK+ T+ +     ++++  
   EHT99397.1 116 VQALLKKRDGLILITGATGSGKSTTLAAmvdaINRQQAR 154
                  57778999999**************99855442223333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00034      0.19       2      20 ..     127     145 ..     126     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00034
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 i itG+ ++GK+t+l+a+ 
  EHT99397.1 127 ILITGATGSGKSTTLAAMV 145
                 89*************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00034      0.18       1      22 [.     127     148 ..     127     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00034
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 Il+tG+ G+GK+t   +  +  
  EHT99397.1 127 ILITGATGSGKSTTLAAMVDAI 148
                 99***********988775553 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.16      19      49 ..     120     151 ..     109     302 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
                 XE..EEEEEEEESTTSSHHHHHHHHH.HHCS- CS
     G-alpha  19 kkkrevkllllGqseSGKsTilkqlk.llykk 49 
                  kkr+  +l+ G+ +SGKsT+l  +   + ++
  EHT99397.1 120 LKKRDGLILITGATGSGKSTTLAAMVdAINRQ 151
                 5567888**************99887433333 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00049      0.27       4      49 ..     126     170 ..     123     228 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00049
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladp 49 
                 +++itGa  +GK+t l  +++    +++    ++l+d+ +  ++ +
  EHT99397.1 126 LILITGATGSGKSTTLAAMVDAIN-RQQARHILTLEDPIEFIHRSQ 170
                 689***************997666.444445556666655443333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00059      0.32      40      67 ..     119     146 ..     108     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00059
       Rad17  40 LesrkkriLLisGPsGCgkstvvkvLsk 67 
                 L +++  ++Li+G +G gkst++  +  
  EHT99397.1 119 LLKKRDGLILITGATGSGKSTTLAAMVD 146
                 4455566***************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 2676.28
//
Query:       EHT99398.1  [L=235]
Description: putative enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-31  109.5   2.2    2.2e-31  109.2   2.2    1.1  1  Ala_racemase_N   Alanine racemase, N-terminal domain
  ------ inclusion threshold ------
        0.1   13.1   0.0       0.27   11.8   0.0    1.7  1  Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal doma


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   2.2   2.5e-35   2.2e-31       2     218 ..       7     227 ..       2     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2.5e-35
                     EHHHHHHHHHHHHHHS.CT..TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC...STGGGHHHHHHT.T CS
  Ala_racemase_N   2 dldalrhNlrrlrala.gp..gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg...fspeelaalaey.d 89 
                     +l+++r++++++++++ ++  +  l+av+K+  +++ av+ a  +a  g  +fg+++++E++e  +a  ++p l+++     ++++ +++ae+  
      EHT99398.1   7 NLQQVRQRIAAAARRCgRApeEITLLAVSKT--KPASAVKEAA-AA--GQLAFGENYVQEGVEKVQALTSHPNLIWHFigpLQSNKSRLVAEHfA 96 
                     566777777777777743377556*******..9999988888.44..489*************99*99*******998766999999999999* PP

                     EEEEESSHHHHHHHHHHHHHTTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHHHHHHH CS
  Ala_racemase_N  90 ltvtvdsleqlealaaaareagkplrvhlkidtgmg..RlGftpeeleellealaalpglrleglmtHfasadepdeeteaqlarfeealeelek 182
                     + +t+d+l+ ++++++++ e+  pl+v+++++++ +  ++G+  e+++el++a+aa+p+lrl+glm ++a   + + +  a  +++++a ++l++
      EHT99398.1  97 WCHTLDRLKIAQRFNDQRPEHLAPLNVLIQVNISDEnsKSGIMLEAVDELAQAIAAMPRLRLRGLMAIPAPEQDYQ-KQLAVCQQMADAFHQLKQ 190
                     *********************************9999**********************************88655.444455555555566676 PP

                     TTGGGSEEEEESHHHHHHSG.GGTTEEEESGGGGT-S CS
  Ala_racemase_N 183 aglrppvvslanSaaillaa.ahfdmvRpGialyGls 218
                     ++ + +++s+++S ++ +a+ a +++vR+G+a++G++
      EHT99398.1 191 HYSDVDTLSMGMSDDMEAAIaAGSTLVRIGTAIFGAR 227
                     668999*************7355************98 PP

>> Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.27      11      70 ..     135     229 ..     126     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
                      SSEEEEEEEESS--SS---EEE---S-....-TTSEEEE....................................EEEHHHHHHT-EEE--.SS CS
  Glyco_hydro_36C  11 kseavvfyfqvlarpnaalrrlklkGL....dpdkkYrv...............................eeegktysGdeLmnaGLnlplagd 69 
                      ks  ++ ++  la++ aa++rl+l+GL     p+++Y+                                + e  ++ G++L ++G  +  a d
       EHT99398.1 135 KSGIMLEAVDELAQAIAAMPRLRLRGLmaipAPEQDYQKqlavcqqmadafhqlkqhysdvdtlsmgmsdDMEAAIAAGSTLVRIGTAIFGARD 228
                      5557888999*****************4444489999999999999999999999999999999999999778889999999999988877777 PP

                      S CS
  Glyco_hydro_36C  70 f 70 
                      +
       EHT99398.1 229 Y 229
                      7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1703.55
//
Query:       EHT99399.1  [L=184]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-39  134.3  16.6    1.7e-21   76.4   4.5    2.3  2  YGGT      YGGT family


Domain annotation for each model (and alignments):
>> YGGT  YGGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   4.5   9.7e-26   1.7e-21       2      66 ..      10      76 ..       9      80 .. 0.94
   2 !   63.8   4.2   8.2e-22   1.5e-17       5      66 ..     108     170 ..     104     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 9.7e-26
        YGGT  2 lllslyilllilrillsw.pnpfynpiaqflyklTePllapfRrlipggg.iDlSplvallvlqllr 66
                +l++ly+++l+lri+++w + +fynp+aqf++k+T+P+++p+Rr++p +g iD ++l++++vl  l+
  EHT99399.1 10 TLIDLYVMVLLLRIWMQWsRCDFYNPLAQFVVKITQPIVKPLRRILPALGpIDTASLLLAFVLTTLK 76
                79*********************************************7777************9998 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 8.2e-22
        YGGT   5 slyilllilrillsw....pnpfynpiaqflyklTePllapfRrlip.gggiDlSplvallvlqllr 66 
                  l+++++i+r l+sw    + p++++    l +lTePl+ap+Rr++p +ggiD+S+++++lvl+ l+
  EHT99399.1 108 YLVFWVIIIRSLMSWisqgRGPMDYV----LIQLTEPLMAPIRRILPaMGGIDFSAMIVILVLYALN 170
                 689************87766666666....*****************6667************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1394.66
//
Query:       EHT99400.1  [L=197]
Description: dITP/XTP pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-61  206.3   0.0    4.2e-61  206.1   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.1   0.0   2.3e-65   4.2e-61       1     186 [.       4     192 ..       4     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 206.1 bits;  conditional E-value: 2.3e-65
                 EEEC-S-HHHHHHHHHHTTTECCCE.EECCCCEE----BSSSHHHHHHHHHHHHHH.HTS-EEEEEEEEEEGGGTTTBGGGTTTTTHTTCHHHHHHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilaeellevkslkelelpeveEtqgtfeenalkKaraaae.aglpvladDsgLevdaLnglPGvysarfagegaedeenlakl 98 
                 +v+aTgN+gK+re++++l+  +l+++  ++l  + +eEt+ tf ena++Kar+aa+ +glp++adDsgL+v+aL+g+PG+ysar+ag +a+d++nl+kl
  EHT99400.1   4 VVLATGNPGKVRELADLLSAFGLDIVAQTDLGVESAEETGLTFIENAILKARHAAQvTGLPAIADDSGLAVNALGGAPGIYSARYAGDDASDQQNLEKL 102
                 699***************9988888877778888888******************978***************************************** PP

                 HHHCTHTT.S--EEEEEEEEEEEET.TTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SSBTTTS.CHHHHHHSHHHHHHHHHHH CS
  Ham1p_like  99 leeleeee.edrsArfvcvlaladp.eeeeellfeGeveGeiveeprgeggfGyDpiFvpeegektfaelskeeknaiShRgkAleklle 186
                 l++le+ +  +r+A+f+cvl+++++  + + l+f+G ++Gei+++p geggfGyDp+F+ +  +kt ael+k+ek ++ShRgkAl  lle
  EHT99400.1 103 LQALESTPdGQRQAQFHCVLVYLRHaADPTPLVFHGAWDGEITRTPAGEGGFGYDPVFYIPALGKTAAELTKAEKGKVSHRGKALTLLLE 192
                 ****99666899***********99855566******************************7799********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1554.77
//
Query:       EHT99401.1  [L=379]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-18   67.8   0.0    2.1e-18   67.3   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    4.4e-08   33.1   0.0    9.8e-08   32.0   0.0    1.6  1  HemN_C       HemN C-terminal domain
  ------ inclusion threshold ------
      0.027   14.5   0.0       0.18   11.8   0.0    2.1  2  HTH_45       Winged helix-turn-helix
       0.19   11.9   0.0       0.29   11.3   0.0    1.3  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   4.6e-22   2.1e-18       2     166 ..      11     179 ..      10     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 4.6e-22
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH..HHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHGHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelk..aekg.vkevilgggepllypdfvellerlakla....vpgiritvetngtlpdee 92 
                  ++ ++C ++C++C+++++  + +++++  v+ +l+ ++      + + v+++++ggg+p+l +  ++ +++   +a     +g +it+e+n+++++ +
   EHT99401.1  11 IHIPWCVQKCPYCDFNSHALKDEVPHIEYVQHLLRDLENDLplIHGRdVRTIFIGGGTPSLLSSSAMQMLMDGVRArltlAEGAEITMEANPGTVEAD 108
                  6889**************777777777777777777777766545556**************88888888888888889999**************** PP

                  HHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  93 klerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                     +  ++g++r+s+g++++++   l++++r h++ee ++a  ++  ++++  ++++ +++G  d+ l e l++
   EHT99401.1 109 RFSAYQRAGINRISIGVQSFSPQ-KLERLGRIHGPEEAKRAAALAQGLNLR--SFNLDLMHGLPDQSLTEALDD 179
                  ***********************.888888******************999..677777777777777766665 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.2e-11   9.8e-08       5      64 ..     306     364 ..     302     366 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.2e-11
      HemN_C   5 drleEeiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLeldggrlrltprG 64 
                 d  +E++++++Rl e  + a f  ++gl  e+l +++l++++++G+++ ++++++ t++G
  EHT99401.1 306 DKPFEFFMNRFRLLEPAPRASFSRYTGLN-EALIRPQLDQAIAAGYITETADIWQITEKG 364
                 889*************************7.8888*************************9 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.3   1.3e+03      29      40 ..     250     261 ..     248     263 .. 0.88
   2 ?   11.8   0.0   4.1e-05      0.18      30      72 ..     332     374 ..     322     377 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.3
      HTH_45  29 anLsykllnkYL 40 
                  nL+y ++  YL
  EHT99401.1 250 HNLNYWRFGDYL 261
                 6**********9 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.1e-05
      HTH_45  30 nLsykllnkYLdmLvekglikkskekYvlTekGlelleklkel 72 
                  L+  l++  Ld+ +  g+i+++ + +++TekG+ +l++l el
  EHT99401.1 332 GLNEALIRPQLDQAIAAGYITETADIWQITEKGKLFLNSLLEL 374
                 57788888889999***********************998765 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.4e-05      0.29       2      91 ..      10     104 ..       9     125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.4e-05
     Fer4_14   2 fvrlsgCnlsCkgCd.nketwkselgkpqteelleqilk....dlkkseikiqglvltGGePLhyenkkellklvkrlkeey...pekkiwletngtl 91 
                 ++ +  C  +C+ Cd n+++ k+e+ +++  + l + l+      + ++   + + + GG P    + ++++ l++ ++ +    +  +i++e n   
  EHT99401.1  10 YIHIPWCVQKCPYCDfNSHALKDEVPHIEYVQHLLRDLEndlpLIHGRD--VRTIFIGGGTPS-LLSSSAMQMLMDGVRARLtlaEGAEITMEANPGT 104
                 677778*********8788888877776665555555552211223333..46699999***7.469999999*****99996645599999998433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3123.71
//
Query:       EHT99402.1  [L=244]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-23   82.2   0.0    4.4e-23   81.7   0.0    1.2  1  UTRA      UTRA domain
      4e-11   42.4   0.1    7.3e-11   41.6   0.1    1.5  1  GntR      Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.023   14.1   0.4       0.04   13.3   0.1    1.5  2  RepL      Firmicute plasmid replication protein (RepL)


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   7.4e-27   4.4e-23       2     136 ..      96     231 ..      95     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 7.4e-27
                 CCCSEEEEEEEEEEEE-.-HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE-.- CS
        UTRA   2 qglepktevlsleevpa.saeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearla.d 98 
                  g+++  +vl+++ ++   +e+a+aL++  ++++++i Rl + d+ pvale ++lp sl+++++   l e s y+y+e+ +g +i+r e+++ a+++ d
  EHT99402.1  96 KGHKAVRKVLTASIIKVpGPEMAQALRIRNSDQIYKILRLMCFDDIPVALEYIHLPVSLFSSMEFGRL-EISKYSYIEQITGKKIQRREQQLNAINVtD 193
                 58899999999999998679************************************************.****************************77 PP

                 HHHHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEE CS
        UTRA  99 aeeaelLgisagspvLviervtydadgrpveysrsyyr 136
                  e+ +lL+ sa++++L i  ++y++dg p e+++ + +
  EHT99402.1 194 SEQLRLLNFSANEAALEINETVYLDDGMPCEVNIAIIN 231
                 8999****************************998765 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   1.2e-14   7.3e-11       2      64 .]       9      71 ..       8      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.2e-14
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++v++++  +I++  l pGdkL +e ++a+ +g++r tvReA r L +++ + r +g+G fV
  EHT99402.1  9 QKEVVDYILTKIMQDGLLPGDKLDTEIAIAKNIGITRATVREATRILIEQQRIYRVKGSGLFV 71
                689**********************************************************98 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.7e-06      0.04      50     109 ..       2      65 ..       1      73 [. 0.83
   2 ?   -2.9   0.0      0.65   3.9e+03      18      38 ..     173     188 ..     165     213 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.7e-06
        RepL  50 ldliGnkktrlvyylidnlnsnntl....iatnRelaeetgislktvsetlkileeanilkkka 109
                 +d i +k+ ++v y++  + ++  l    + t+  +a++ gi  +tv+e  +il e + + +  
  EHT99402.1   2 FDGITEKQKEVVDYILTKIMQDGLLpgdkLDTEIAIAKNIGITRATVREATRILIEQQRIYRVK 65 
                 6778899*************999876666799*********************99887776643 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.65
        RepL  18 ketGeveeldvlkieerdfnF 38 
                 + tG      +++++e++ n 
  EHT99402.1 173 QITGK-----KIQRREQQLNA 188
                 44443.....33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1897.93
//
Query:       EHT99403.1  [L=157]
Description: putative PTS system IIA component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-29  102.0   0.0    3.1e-29  101.7   0.0    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   1.7e-33   3.1e-29       3     131 ..       8     136 ..       6     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 1.7e-33
                 HHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTE..TCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEEE CS
  PTS_EIIA_2   3 ltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgig..ngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklifl 98 
                 l+ e i+  + +++++eai+  +++l+++ga++++  y++ ++   ++ +++++  + +A+PHar+e+  kk +++v+kl +pv+f+a++++pv+++f+
  EHT99403.1   8 LNAEKIQYIERVSDWKEAIQVTGNPLCREGAISQD--YIDTIVRLKEETGPYFViaPRIAMPHARPEQgAKKLGLSVVKLATPVNFDADENDPVDILFM 104
                 78899999999**********************99..****************778*********9988******************888********* PP

                 EE-SSCHH.HHHHHHHHHHHHCSCCHHHHHHC- CS
  PTS_EIIA_2  99 lalpekdaehlkilaqLaellkdeefvekLrka 131
                 + +p++++ h+++++qLae+l+    ++++++ 
  EHT99403.1 105 FSAPDSNS-HIEMISQLAEVLTTRTSCNAFITH 136
                 ********.*************99999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1423.36
//
Query:       EHT99404.1  [L=89]
Description: putative PTS system sugar-specific IIB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.9   1.3    1.2e-14   54.7   1.3    1.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit
  ------ inclusion threshold ------
       0.12   11.1   0.0       0.13   11.0   0.0    1.0  1  Neur      Neuraminidase


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   1.3   1.3e-18   1.2e-14       1      88 [.       2      83 ..       2      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.3e-18
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTT.SEEEEECTTHHHCCHCHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfag.kpvavinikdalgimdgekvl 88
                ki+++Cg+G+++S+m++++++k++k+ ++ ae+e+ +    +  +d aD+++ a+++++      a+  p +vi i+++++ +++e+ +
  EHT99404.1  2 KIMAVCGSGLGSSFMMEMNIKKVLKAIDMTAEVEHAD--LGSVTPDVADVFVMAKDIAY-----SANlPPEKVIIINNIIDLKEVEQKI 83
                8************************************..99999999***********8.....2222356789999999888888766 PP

>> Neur  Neuraminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.4e-05      0.13     135     201 ..       9      77 ..       2      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.4e-05
                 SS-EEEEEEEEETTEEEEEE--EES-SB-EEEEEEESSSSEEEEEEE-SSS-SS-E...EEEEETTTTEE CS
        Neur 135 dglakyrilkiekGkiikeielsasvehieecscgfasdkkvecvcrdnwtganrp...vvkldveldsa 201
                 +gl +  ++ ++  k++k i+++a+veh +  s +++  + v  + +d  ++an p   v+ +++ +d  
  EHT99404.1   9 SGLGSSFMMEMNIKKVLKAIDMTAEVEHADLGSVTPDVAD-VFVMAKDIAYSANLPpekVIIINNIIDLK 77 
                 56666677888999********************888877.999**********9844455566655655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 774.40
//
Query:       EHT99405.1  [L=457]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-142  474.1  34.0   3.6e-142  474.1  34.0    1.6  2  EIIC-GAT  PTS system sugar-specific permease component


Domain annotation for each model (and alignments):
>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.1  34.0    2e-146  3.6e-142       2     396 .]      13     408 ..      12     408 .. 0.99
   2 ?   -1.8   0.2     0.071   1.3e+03     222     240 ..     426     444 ..     414     453 .. 0.63

  Alignments for each domain:
  == domain 1  score: 474.1 bits;  conditional E-value: 2e-146
    EIIC-GAT   2 ilggpaillglivligllllkkklskaikgtlkaiiGflilslgagllvsslkpvaeafseafglkidvvwpneaivalassqelgsevalilllgliv 100
                 +l+ p+il+gl+++ gl++++k+l ++ikgt+k+i+Gfl+l  ga++lv+sl+p+++ f++af++ ++++++nea+v++a++ ++g+ ++li+++g+++
  EHT99405.1  13 VLKVPSILVGLVAMFGLIAQRKPLPDVIKGTVKTILGFLVLAGGATVLVGSLTPLGDIFKHAFNV-QGIIPNNEAMVSIALA-KYGAPTTLIMAFGMVA 109
                 7999*************************************************************.8**************6.99************** PP

    EIIC-GAT 101 niilarfkktttlkyifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqtlgyalaalvgklfgkk 199
                 ni  arf++   lkyi+l+ghv++++a+++a++l v+gf++v+l+ +gsl lg++++++pal+q+++rki+g d+val+h++t+gy+l++++g+++gk 
  EHT99405.1 110 NITVARFTR---LKYIYLSGHVTFYMACMIAIILSVAGFEGVQLIYTGSLTLGMLMAFFPALAQPYMRKIIGHDQVALAHTGTVGYVLSGWIGSIVGKG 205
                 *********...*************************************************************************************** PP

    EIIC-GAT 200 ekstekiklpkklgflrdnivagailmlilfllaaliagkel.....sggknfvvqiltqaltfaaglviilkgvrmfveelvpafkgiseklvpgavp 293
                 +kste++++pk+l+flrd++++++++m+i+++++ + ag+e+     s+g+n++v+++ qa+tfaag++iil+gvr++++e+vpaf g+seklvp a p
  EHT99405.1 206 SKSTEEMNMPKNLSFLRDSTISISLTMMIIYFILSVSAGREYvesqfSHGQNYLVYSFVQAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPSARP 304
                 *************************************9888887777888************************************************* PP

    EIIC-GAT 294 AlDvavvfgfapnavtiGfllsfigqllallilillgaaiilPgvlplfflgatagvfanavggikgaiigsfisGllilflpalllpllgelgmagvt 392
                 AlD+++vf++apnav++Gf++sfig+l++l+il+ l+  +ilPgv+p+ff+gat+gvf+na+gg +ga+ig+f++G+li+flp++llp+lg++g +++t
  EHT99405.1 305 ALDCPIVFPYAPNAVLVGFISSFIGGLVGLFILGQLHWVLILPGVVPHFFCGATVGVFGNATGGKRGAMIGAFAHGILITFLPVALLPVLGAIGLTNTT 403
                 *************************************************************************************************** PP

    EIIC-GAT 393 f.dad 396
                 f d+d
  EHT99405.1 404 FsDTD 408
                 *9998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.071
    EIIC-GAT 222 gailmlilfllaaliagke 240
                 g+i+m+i +++a+l++ + 
  EHT99405.1 426 GTITMIITGIFALLVIYNY 444
                 4566666666665555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3661.10
//
Query:       EHT99406.1  [L=238]
Description: uncharacterized DUF2884 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-41  141.5   1.2    3.4e-41  141.2   1.2    1.0  1  DUF2884   Protein of unknown function (DUF2884)


Domain annotation for each model (and alignments):
>> DUF2884  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   1.2   1.9e-45   3.4e-41       1     218 [.      23     236 ..      23     238 .] 0.96

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 1.9e-45
     DUF2884   1 CdVelnydvtleekkleisdagkekvqidedgqLfvdgkkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsdaldevltellgedsevaeklk 99 
                 C+V+ ++dv +++++++++ a + +++i+ +g +  +g+k++++a  +q++ +y++ +r+++P++++ a+ +++ ++ ald+++te++ge+s   ++l+
  EHT99406.1  23 CSVKPQDDVVISPQNVQVVGA-NGNLVISPQGDVQFNGQKITMNAASRQQAINYQNALRRDLPWIDNGATSRLEKGRLALDKIITEQVGESSRLHSRLA 120
                 *********************.8999************************************************************************* PP

     DUF2884 100 tkldelkarvkekfykdgdklvlgaqslesldeafdkefeqeieelveesiGsilsalgsemlesegdn.....leafeqrmeklgekieeeveeqaka 193
                 t+ ++lk ++++ +++++d+l++++q++++        + ++ ++lv++ +G+il++ ++em ++  +n     l+ ++ ++ +l++ i++e+++q+++
  EHT99406.1 121 TLNAQLKTQMNRIIEHRSDGLTFHHQAIDQ--------VRADGQQLVNQAMGGILQDSINEMGTKAMTNgggsgLQGLMGNLGGLQNAIQSEWNNQETD 211
                 *****************************7........899999999999999999999998888777777779************************* PP

     DUF2884 194 lekkaealCeslkeldaleqqLqkk 218
                 ++++++++C+++ +l++ ++ L k+
  EHT99406.1 212 FQQFGKDVCNRVISLEKDRKTLVKS 236
                 ********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1751.35
//
Query:       EHT99407.1  [L=108]
Description: uncharacterized DUF469 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-41  141.3   0.1    1.8e-41  141.1   0.1    1.0  1  DUF469    Protein with unknown function (DUF469)


Domain annotation for each model (and alignments):
>> DUF469  Protein with unknown function (DUF469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.1   9.8e-46   1.8e-41       1     101 []       7     107 ..       7     107 .. 1.00

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 9.8e-46
      DUF469   1 rRlrKKlrvdeFqelgFevslklkedlseeeidalvdafi.evieanglafggsgkeeleglvclaklgsvteedreaveawlkarsevkevevseLvD 98 
                 rRlrKKl++deFqelgF+v +++++++see id+++++fi e+i++ngla++gsg+ ++egl+cl+++g++tee+re+v++wl++r+ + +v+v+eL+D
  EHT99407.1   7 RRLRKKLHIDEFQELGFSVAWRFPDGTSEEVIDETLNQFInEAIDPNGLAYDGSGYLAWEGLICLQQTGKCTEEHRELVRKWLEDRQ-LLDVKVTELFD 104
                 9**************************************************************************************.9********** PP

      DUF469  99 awy 101
                 +w+
  EHT99407.1 105 VWW 107
                 **9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 854.88
//
Query:       EHT99408.1  [L=239]
Description: tRNA (m7G46) methyltransferase, SAM-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-61  206.6   0.0    2.2e-61  206.3   0.0    1.1  1  Methyltransf_4   Putative methyltransferase
     0.0047   17.6   0.0     0.0074   17.0   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.013   14.6   0.0    1.2  1  Methyltransf_3   O-methyltransferase
      0.057   13.2   0.0       0.08   12.7   0.0    1.2  1  TrbL             TrbL/VirB6 plasmid conjugal transfer protein


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0   4.9e-65   2.2e-61       2     173 .]      64     233 ..      63     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 4.9e-65
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTS CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllq 96 
                     apv+leiG+G+G +lv++A++nP++nflGiE++ ++v ++l+++++ +++Nlr++++da++vl+++++d+sl++++++FPDPw+K+rh+KrR++q
      EHT99408.1  64 APVTLEIGFGMGASLVTMAQNNPHQNFLGIEVHAPGVGACLASAKDANVSNLRVMCHDAVEVLEKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQ 158
                     79********************************************************************************************* PP

                     HHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-EEE CS
  Methyltransf_4  97 pellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeqkvqskgkeiyel 173
                       + + ++r+Lk gGv+++aTD+e ya +ml+v+++   + +ls+++ + ++p   +r++tk+eq+ q++g+ +++l
      EHT99408.1 159 VPFAELVMRKLKLGGVFHMATDWEAYAGHMLEVMSSIAGYRNLSEDNTYVPRPE--TRPLTKFEQRGQRLGHGVWDL 233
                     ***************************************************998..******************985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.7e-06    0.0074       2      73 ..      68     143 ..      67     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-06
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCG.BS..SSTTTEEEEEEEST CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaed.lp..fedgsfDlvvssga 73 
                      L++G G G  +  +a++ ++++++g+++ +  + a+ + a+++++ n++++++da + l+   +d+s  +v +++ 
       EHT99408.1  68 LEIGFGMGASLVTMAQNNPHQNFLGIEVHAPGVGACLASAKDANVsNLRVMCHDAVEvLEkmIPDNSLRMVQLFFP 143
                      89***************879**********************999**********552553359999988877654 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     3e-06     0.013      48     152 ..      64     174 ..      31     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-06
                     --EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE-S......-GGGH CS
  Methyltransf_3  48 akrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvDa......Dkssy 136
                     a  +leiG   G sl+++a++ P   + l i++    +   l   + a v + + ++  da++vLe+++ d++l    + f D       +k+  
      EHT99408.1  64 APVTLEIGFGMGASLVTMAQNNPHQ-NFLGIEVHAPGVGACLASAKDANVSN-LRVMCHDAVEVLEKMIPDNSLRMVQLFFPDPwhkarhNKRRI 156
                     6679*****************9986.6899****999999999999999975.89999**************99999999988521111122222 PP

                     HH..HHHHHHHTEEEEEE CS
  Methyltransf_3 137 vn..yyeklleLvkvGgl 152
                     v+  + e +++ +k Gg+
      EHT99408.1 157 VQvpFAELVMRKLKLGGV 174
                     212256666666666666 PP

>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05      0.08      17      53 ..     157     193 ..     153     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
        TrbL  17 ieepiaelvkrllklgliaalatnwggyativvdsfa 53 
                 ++ p+aelv+r lklg ++ +at w++ya  + ++++
  EHT99408.1 157 VQVPFAELVMRKLKLGGVFHMATDWEAYAGHMLEVMS 193
                 789**************************96444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2001.11
//
Query:       EHT99409.1  [L=311]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-22   77.1   0.2    4.5e-11   42.6   0.1    2.8  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
    4.3e-19   68.5   0.3    9.2e-19   67.5   0.3    1.6  1  HTH_18    Helix-turn-helix domain
     0.0024   17.5   0.0     0.0041   16.8   0.0    1.3  1  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.026   14.9   0.1    1.6  1  Rrf2      Transcriptional regulator
      0.031   13.7   0.9       0.48    9.8   0.1    2.1  2  DUF908    Domain of Unknown Function (DUF908)


Domain annotation for each model (and alignments):
>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     3e-11   1.1e-07       1      42 []     209     250 ..     209     250 .. 0.98
   2 !   42.6   0.1   1.2e-14   4.5e-11       6      42 .]     263     300 ..     261     300 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 3e-11
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +++n+++ lti+d+A+++ ++ +y + +F+++++ t +qy+t
  EHT99409.1 209 IADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTLKQYIT 250
                 789*************************************96 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 1.2e-14
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +t++t+ d+A ++gf S+s F+ +F +++Gm+P+qyr+
  EHT99409.1 263 DTDITVLDVALTAGFrSSSRFYSTFARYVGMSPQQYRK 300
                 6899********************************96 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.3   2.6e-22   9.2e-19       2      80 ..     223     300 ..     222     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.6e-22
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 a+++ +++ +   +f+rv++lt k+y++++R++++r+lL  +t+ +v ++Al +GF + srF+  f ++ g++P++yr+
  EHT99409.1 223 AEHVKLNANYAMGIFQRVMQLTLKQYITAMRINHVRALLS-DTDITVLDVALTAGFRSSSRFYSTFARYVGMSPQQYRK 300
                 8889999999999************************996.6************************************8 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-06    0.0041      10      62 ..      47      98 ..      42     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
                EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SS CS
     Cupin_2 10 sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgd 62
                ++  h+H +  e+ +  +G +e+ +++e+v++++G + +f a tpH++  +g+
  EHT99409.1 47 MSSCHWHGQV-EVNVPFDGDVEYLINNEVVQIKQGYITLFWACTPHQLTRPGN 98
                5678*****9.************************************998886 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   7.2e-06     0.026       9      48 ..     201     239 ..     196     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHH CS
        Rrf2   9 yalhallyLakeeeeepvsseeiaerqnispsylekilak 48 
                 y+ ++l y+a ++++  ++++++ae+++++++y+  i+++
  EHT99409.1 201 YVSQMLSYIADNYDQA-LTINDVAEHVKLNANYAMGIFQR 239
                 77799*********98.****************9999875 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.024        84     307     355 ..     190     243 ..     180     246 .. 0.83
   2 ?    9.8   0.1   0.00014      0.48      30      72 ..     255     297 ..     254     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.024
      DUF908 307 eesevprelqtaaleaLealark...kaklsdvlsaLnanvnh..GiLlyvlRk 355
                 ++++v+r+ q+ + + L+ +a        ++dv+ ++ +n n+  Gi+  v++ 
  EHT99409.1 190 HKNSVSRHAQFYVSQMLSYIADNydqALTINDVAEHVKLNANYamGIFQRVMQL 243
                 368999999999999999999887879999******999999988**9999875 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00014
      DUF908  30 ehLndLLnttdldvllatLrlllrlaqrysasnkrtksasrtv 72 
                 +h+  LL +td+ vl+ +L+ + r ++r+ ++ +r    s + 
  EHT99409.1 255 NHVRALLSDTDITVLDVALTAGFRSSSRFYSTFARYVGMSPQQ 297
                 68999**************************999988777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2628.10
//
Query:       EHT99410.1  [L=450]
Description: NAD(P)-binding alpha-galactosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-76  255.8   0.1    2.4e-76  255.4   0.1    1.2  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
    2.9e-61  207.2   0.0    3.9e-61  206.8   0.0    1.2  1  Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
  ------ inclusion threshold ------
        0.1   12.8   0.1       0.31   11.2   0.1    1.8  2  DUF1320         Protein of unknown function (DUF1320)


Domain annotation for each model (and alignments):
>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.1     4e-80   2.4e-76       1     182 [.       5     187 ..       5     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 4e-80
                    EEEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSHHHHHHHHHHHHHHHHHCTTTCEEEEESSHHHHHTT-SEEEE---TT.HHHHHHHHHHC CS
  Glyco_hydro_4   1 kiviiGgGStifaklllgdlkkteelsvselaLvDideerldaiqtlakklveeagadlkieattdrkealkdadfVitairvG.lekareideki 95 
                    ki++iG+GStif+k++lgd++++++l+ +++aL+Did +rl+++ t+++kl+ +aga  +i++++++k al+dadfV++a+++G +++++++d+++
     EHT99410.1   5 KITFIGAGSTIFVKNILGDVFHRDALKSAHIALMDIDATRLEESYTVVSKLMYSAGAAGQITCHSEQKAALTDADFVVVAFQIGgYQPCTVTDFEV 100
                    8***********************************************************************************9*********** PP

                    CHTTTTT-CTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHHHHHHC CS
  Glyco_hydro_4  96 plryGieqtiqdtvgpggifrglrtipvlleIakdieelcPdawvlnytNPaavvteallrlvpnikavglChsvigvkeelakllt 182
                    ++ryG+eqti+dt+gpggi+r+lrtip+l++I++d++e+cP a++lny+NP+a++t+a+++++p+ik+vglChsv+g++eela+ l+
     EHT99410.1 101 CKRYGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPHATLLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAEELANDLN 187
                    ***********************************************************************************9987 PP

>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.0   6.5e-65   3.9e-61       1     208 []     197     420 ..     197     420 .. 0.85

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 6.5e-65
                     EEEETTEEEEEEEEC.....TTEEHHHHHHHHHHH.....HHHHHHCTGGG.......TSHHHHHHHHHHSSEEECGGHHCTTSS..HCHHHHSH CS
  Glyco_hydro_4C   1 vaGlNHlaWllkled.....kGeDlypelrelvee.....dewleeiaekk.......aervridllrrlgllpteysrhyaEYvp.ylkreape 77 
                     +aG+NH+a++l le+        Dlyp+l+++ +      +         +        + vr++++++lg+++te+s+h+aEY+p ++k  +++
      EHT99410.1 197 CAGVNHMAFYLTLERktadgSYVDLYPDLLAAWNAgqvpkP---------NlhgntrcPNIVRYEMFKKLGYFVTESSEHFAEYTPwFIKPGRED 282
                     8*************53454455799****998888655442.........12223456889********************************** PP

                     HHHHHH......HHHHHHHHHHHTTTTTHHH........HHHHSSCHTS-SHHHHHHHHHHTS-EEEEEEEE-TTSSTTS-TTSEEEEEEEEETT CS
  Glyco_hydro_4C  78 liekek......traevvkevekelfeelek........eklelekrsgeyavdiieaivtdkprrlvvnvpNnglIpnLpddavVEvpclvdkn 158
                     lie+++      +++++++      ++e+++        e++  +k s eya+ i++ai+t++p+++++nv+N+ lI+nLp++++VEv clvd+n
      EHT99410.1 283 LIERYQipldeyPKRCEEQ------LAEWRAelaryrraERI-ESKPSREYASTIMNAIWTGEPAVIYGNVRNDSLIDNLPQGCCVEVACLVDAN 370
                     ****998666665555555......55555534444433444.5779************************************************ PP

                     EEEEB--CS-HHHHHHCHHHHHHHHHHHHHHHHHTBHHHHHHHHHCSTT- CS
  Glyco_hydro_4C 159 girpvavgelpeqlaallrtniaveeltveAalegdrelalqallldplv 208
                     gi+p++vg+ p +laa+++tni+v+ l  eA+l+++r+ +++a++ldp++
      EHT99410.1 371 GIQPTKVGTTPSHLAAMMQTNINVQTLLTEAILTENRDRVYHAAMLDPHT 420
                     ************************************************97 PP

>> DUF1320  Protein of unknown function (DUF1320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.9   1.1e+04      69      79 ..     246     256 ..     243     268 .. 0.73
   2 ?   11.2   0.1   5.1e-05      0.31      49      90 ..     283     326 ..     281     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.9
     DUF1320  69 vdiarYrLysr 79 
                  +i+rY+++++
  EHT99410.1 246 PNIVRYEMFKK 256
                 5899**99988 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.1e-05
     DUF1320  49 LakRytlPLktvp....tvlkrlavdiarYrLysrdeateevkkrY 90 
                 L +Ry++PL+++p    + l ++ +++arYr  +r  ++++ +++Y
  EHT99410.1 283 LIERYQIPLDEYPkrceEQLAEWRAELARYRRAER--IESKPSREY 326
                 567*******999888899************9888..444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3531.65
//
Query:       EHT99411.1  [L=470]
Description: melibiose:sodium symporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-81  274.4  42.2    1.4e-81  274.2  42.2    1.0  1  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.2  42.2     8e-86   1.4e-81       1     426 [.      10     436 ..      10     437 .. 0.96

  Alignments for each domain:
  == domain 1  score: 274.2 bits;  conditional E-value: 8e-86
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 syg+ga++ +++  ++ +yl+++ytdv+gls  +vg+++lvar++Dai+Dpi+G+++  t+ rwG+++Pw+l ++++ ++ +++lf+++ +  +a++++
  EHT99411.1  10 SYGCGAFGKDFAIGIVYLYLMYYYTDVVGLSVGMVGTLFLVARIWDAINDPIMGWIVTITRSRWGKFKPWILTGTLTNSLVLFALFSAHLFEGTAQLVF 108
                 7******************************************************************************************99****** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 + vtyil+ ++yt ++ip++slvp++t d+ eR+ l  + +f++ l+++++a +a ++v   gg  +   g+ +f+l+  + ++++++i+   ++e  +
  EHT99411.1 109 VWVTYILWGMTYTIMDIPFWSLVPTITLDKREREELVPWPRFFASLASFVTAGIALPFVSYIGG-DDRGFGFQMFTLLLIVFFIAATLITLRNVHEVYS 206
                 ***************************************************************9.8888889999888888888888888777777655 PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgal 297
                   ++ +t++ +++ l+  ++ + rn+++  ll ++l+   a ++  g ++Yy+tyv+g+ s + ++l  + +++l++++l+++l+  l+++ +++++++
  EHT99411.1 207 -SDGAQTQDGGRMGLSAIVGLIYRNDQLACLLGMALAYNIAANIITGFAIYYFTYVIGDPSLFPYYLSYAGAANLATLVLFPKLVNLLSRRILWAAASA 304
                 .69****************************************************************************************99988877 PP

       MFS_2 298 ltivllvlvlll...qpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvq 393
                 l i+ + +++++   +   + l +++ +++++g++++++l   m+ad+vDyge+k   r e+++++v++++ k +++++++ ++ +L+++gy  +++ q
  EHT99411.1 305 LPILSGGVLFAMalaGSHATSLIVIAGILFNTGTALFWVLQVIMVADTVDYGEYKLHVRCESIAYSVQTMVVKGGSALAAFFIAVVLGMIGY-LPNVNQ 402
                 7777777777777988888888999999****************************************************************.****** PP

       MFS_2 394 spqvvlalrllyavlpavlllvallllvr.ypln 426
                 s++++++++++++vlpav+++++lll++r y ln
  EHT99411.1 403 SQETLAGMQFIMIVLPAVFFALTLLLYFRfYTLN 436
                 ****************************988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3444.66
//
Query:       EHT99412.1  [L=360]
Description: adenine DNA glycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-22   78.0   0.0    1.8e-21   76.6   0.0    1.7  2  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    2.1e-21   76.0   0.1    3.8e-21   75.1   0.1    1.5  1  NUDIX_4        NUDIX domain
    7.8e-08   31.8   0.0    1.8e-07   30.6   0.0    1.6  1  HHH            Helix-hairpin-helix motif
    1.1e-05   25.6   5.0      2e-05   24.7   5.0    1.5  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0     4e-25   1.8e-21       2     105 ..      36     167 ..      35     170 .. 0.96
   2 ?   -2.4   0.0       1.4   6.4e+03      66      78 ..     333     355 ..     272     357 .. 0.67

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 4e-25
                 HHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH.................................S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................x RF
     HhH-GPD   2 sailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv.................................g 67 
                 s+++ qqt+++++ +++er+++r  fpt+ dla+a+ +++ +l+++lG+y  +a++++++A+++v                                 g
  EHT99412.1  36 SEVMLQQTQVATVIPYFERFMAR--FPTVSDLAAAPLDEVLHLWTGLGYY-ARARNLHKAAKQVVevhggefprnyddvaalpgvgrstagailslslG 131
                 899********************..8************************.********************************************9874 PP

                 -SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  68 kpdvlivvDvhvrrilkrlrsikekktkkkvekkleel 105
                     +++ D +v+r+l r++++  ++ +k vek+l+++
  EHT99412.1 132 --LHFPILDGNVKRVLARCYAVAGWPGRKDVEKRLWQI 167
                 ..37******************************9876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                 H..........S-SSS--TTSHH CS
                 x..........xxxxxxxxxxxx RF
     HhH-GPD  66 v..........gkpdvlivvDvh 78 
                 +          ++p++l+v D  
  EHT99412.1 333 AapverllhelRHPQPLPVGDGE 355
                 04444555555788888888865 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.1   8.4e-25   3.8e-21       2     109 ..     234     341 ..     233     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 8.4e-25
                 EEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE-TTS-.HHHHHHHHHHS-..EEEEEEEEEEEEEETTEEEEEE.EEEEEEE..S..---.EEEEEEGG CS
     NUDIX_4   2 vllirdd.grvllekRpekgllggLwefPggeeegee.leealareelgi..eveelepgtvkHvftHfrltlt.vylvrve.egeeapa.elrwvtpe 93 
                 ++l++++ ++v+le+Rp+ gl+ggL++fP+  +++e+ l+++l     gi  ++++l++++  H+f+Hf+l++  ++ ++++ +g+ +++ ++ w+++ 
  EHT99412.1 234 WFLMMQNgDNVWLEQRPPVGLWGGLFCFPQ--FTSEDdLNAWLS--TRGIhaKPQQLTAFR--HTFSHFHLDIVpMW-LSWPsAGALMDEaGGLWYNLT 325
                 6777777699*******************9..888887889995..456632444787788..***********888.88885666665599******* PP

                 GGGGS---CCCHCCHH CS
     NUDIX_4  94 eleeyalptavrklle 109
                  +  ++l+++v++ll+
  EHT99412.1 326 LPPSVGLAAPVERLLH 341
                 *************996 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.1e-11   1.8e-07       2      29 ..     100     127 ..     100     128 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4.1e-11
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIls 29 
                 ++g++p+++++ +alPGVG++tA+aIls
  EHT99412.1 100 HGGEFPRNYDDVAALPGVGRSTAGAILS 127
                 689***********************98 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   5.0   4.5e-09     2e-05       1      17 []     192     208 ..     192     208 .. 0.99

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.5e-09
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    CT  +PkCe+CPL+D C
     EHT99412.1 192 CTRSRPKCEICPLSDGC 208
                    ****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2780.59
//
Query:       EHT99413.1  [L=90]
Description: iron-sulfur cluster protector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-40  136.3   0.2    2.4e-40  136.1   0.2    1.0  1  Iron_traffic  Bacterial Fe(2+) trafficking
  ------ inclusion threshold ------
      0.028   14.2   0.1      0.039   13.8   0.1    1.2  1  DUF5412       Family of unknown function (DUF5412)


Domain annotation for each model (and alignments):
>> Iron_traffic  Bacterial Fe(2+) trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.2   2.6e-44   2.4e-40       1      88 []       1      88 [.       1      88 [. 0.99

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 2.6e-44
  Iron_traffic  1 martvfcvklkkeaegLdfpplpgelGkrifenvskeawqeWlkkqtmLiNekrLnladpkarkfLeeqmekflfgegaekpegyvpp 88
                  m+rt+fc+ l+++aeg df+++pg+lGkri++++skeawq+W++kqtmLiNek+Ln+++p++rk+Le++m +flf++++ ++egy+pp
    EHT99413.1  1 MSRTIFCTFLQRDAEGQDFQLYPGDLGKRIYNEISKEAWQQWMAKQTMLINEKKLNMMNPDDRKVLEKEMINFLFEGKDVHIEGYTPP 88
                  9*************************************************************************************97 PP

>> DUF5412  Family of unknown function (DUF5412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.4e-06     0.039      78     109 ..      28      58 ..      23      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.4e-06
     DUF5412  78 kniYwnyreedakieWldektvvIngkkLnvk 109
                 k iY +  +++a  +W+ ++t+ In+kkLn+ 
  EHT99413.1  28 KRIYNE-ISKEAWQQWMAKQTMLINEKKLNMM 58 
                 677755.5567889***************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 719.01
//
Query:       EHT99414.1  [L=359]
Description: membrane-bound lytic murein transglycosylase C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-67  225.0   0.0    5.7e-67  224.5   0.0    1.2  1  Mltc_N           Membrane-bound lytic murein transglycosylase
    2.3e-32  111.1   0.0    3.5e-32  110.5   0.0    1.3  1  SLT              Transglycosylase SLT domain
    4.1e-05   23.3   1.1    0.00024   20.9   0.1    2.5  2  Lysozyme_like    Lysozyme-like
     0.0021   17.4   0.0     0.0043   16.3   0.0    1.5  1  SLT_2            Transglycosylase SLT domain
  ------ inclusion threshold ------
      0.038   14.5   0.6        0.1   13.1   0.1    2.2  2  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc
      0.065   13.2   0.0       0.15   12.1   0.0    1.6  1  Phage_lysozyme2  Phage tail lysozyme
      0.097   13.0   0.3       0.45   10.9   0.0    2.1  2  E3_binding       e3 binding domain


Domain annotation for each model (and alignments):
>> Mltc_N  Membrane-bound lytic murein transglycosylase C, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   0.0   2.2e-70   5.7e-67       2     163 .]      31     191 ..      30     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.5 bits;  conditional E-value: 2.2e-70
                 XSHHHHH..HHHHHHHHHHHHHHH-GGG----BTTEEEEEETTTTEEEEEETTTTEEEEEE--SSSHHHHHHHHHHHHHHBBS-GGG--TTSSS.---B CS
      Mltc_N   2 akdtkalakdilvaqlskniekiWgkeevlvaskkkyvkytdnyksraeidFdkgiitvetlakkepkesLknAivttLLlpddpskvDlysdk.evkl 99 
                 +kdt+ +  dil++q+++nie+iWg +evl+a++k+yvkytdny++r++i+F++g it+et++ ++p +sL++Ai+ttLL++ddp +vDlysd+ ++++
  EHT99414.1  31 VKDTNGF--DILMGQFAHNIENIWGINEVLIAGPKDYVKYTDNYYTRSHINFESGNITIETISGTDPAASLRQAIMTTLLIGDDPGNVDLYSDAnDIQI 127
                 689****..************************************************************************************99**** PP

                 -SSBTTBTTBB-TTS-B--SHHHHHHHHHHHHHHSEEEEESSSSEEEEEEEE--TTHHHHHHHT CS
      Mltc_N 100 sgkPfLygqvlDqegkpiryewrAnryAdYLiknklktrkknekkvyyveiklvanhlekrakk 163
                 s++P+LygqvlD++g+ ir++ rA+ +AdYLi+nkl++r+++ + +y+v+i++v+nhl+kra+k
  EHT99414.1 128 SKEPLLYGQVLDNTGQAIRWQGRAQAFADYLIANKLQRRTSGLHVIYSVTIPMVPNHLDKRAHK 191
                 **************************************************************98 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   1.4e-35   3.5e-32       2     113 ..     195     318 ..     194     322 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 1.4e-35
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT.....-SHHHHCSHHHHHHHHHHHHHHHHHTTTT.......HHH CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk.....lsedelldPeknisagakyLkslykqyng.......sll 88 
                 +++ka+++ygv+ sl++ai+q+ES+fnp+Avs s a+GLmQ++++ta+++++r+k     +s++ lldPe+ni+ag++yL+ l ++y         +++
  EHT99414.1 195 MVRKAAEEYGVDASLILAIMQTESSFNPYAVSHSDALGLMQVVQHTAGVDVFRMKgkwgkPSRSYLLDPENNIDAGTAYLSLLQSNYLAgiqdpvsRRY 293
                 5789**************************************************9*********************************99********* PP

                 HHHHHHHH-HHHHHHTTHSSHHHHH CS
         SLT  89 lalaAYNaGegtvkkakkevkkkek 113
                 ++++AYN G+g v + ++++k+++ 
  EHT99414.1 294 AVITAYNGGAGSVLRVFSSDKDRAF 318
                 ******************9999875 PP

>> Lysozyme_like  Lysozyme-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.1   2.8e+03     136     152 ..      59      75 ..      25      78 .. 0.79
   2 !   20.9   0.1   9.3e-08   0.00024       3     122 ..     188     335 ..     186     359 .] 0.72

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
  Lysozyme_like 136 enggklyknyGdifYae 152
                     +g+k y +y d +Y++
     EHT99414.1  59 IAGPKDYVKYTDNYYTR 75 
                    57888899999999976 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 9.3e-08
  Lysozyme_like   3 evleykplvekeakeqdieeyvelilaiimqEskG.....kgeD...vMQssEslglk.............eneikdpeeSikqGvkylaealek. 76 
                    +  +y p+v+k a+e+++++  +lilai+++Es+       ++D   +MQ    + +              +  + dpe+ i +G  yl+ + ++ 
     EHT99414.1 188 RAHKYLPMVRKAAEEYGVDA--SLILAIMQTESSFnpyavSHSDalgLMQVVQHTAGVdvfrmkgkwgkpsRSYLLDPENNIDAGTAYLSLLQSNy 281
                    5679**************85..8**********9855555333322257777666666899999****99999999*********99987543322 PP

  Lysozyme_like  77 .akekgv..dletavQaYNfGkgYidyvaknggkyteelakafskevv.....k 122
                     a+ +++  +  +++ aYN G+g +  v ++++  +++  ++ s  +v     k
     EHT99414.1 282 lAGIQDPvsRRYAVITAYNGGAGSVLRVFSSDKDRAFTIINSMSPGQVyqtlsK 335
                    255555567888999*******99988888888888888888888777333331 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06    0.0043      71     105 ..     190     224 ..     186     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
       SLT_2  71 kehaallariekeyGVpaeiivAiwgvEtryGknt 105
                 +++  + +++ +eyGV+a++i+Ai+  E+++  + 
  EHT99414.1 190 HKYLPMVRKAAEEYGVDASLILAIMQTESSFNPYA 224
                 567778899*********************97655 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.1   2.9e+03      24      24 ..      80      80 ..      34     164 .. 0.63
   2 ?   13.1   0.1     4e-05       0.1       3      29 ..     195     221 ..     193     356 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.1
                     H CS
  Glucosaminidase 24 l 24
                      
       EHT99414.1 80 F 80
                     0 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4e-05
                      HHHHHHHHCT.-HHHHHHHHHHHHTTT CS
  Glucosaminidase   3 aaleaakkygippsvalaqaalEsgwg 29 
                      ++++aa++yg+++s++la +  Es + 
       EHT99414.1 195 MVRKAAEEYGVDASLILAIMQTESSFN 221
                      6789********************986 PP

>> Phage_lysozyme2  Phage tail lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.8e-05      0.15      23      68 ..     210     251 ..     204     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-05
  Phage_lysozyme2  23 ilGniqqEsgfnpgavesalskggggyGlvQWtgsrrt.allkyaka 68 
                      il+ +q Es+fnp av      ++ ++Gl+Q  + +   ++ ++  +
       EHT99414.1 210 ILAIMQTESSFNPYAVS-----HSDALGLMQVVQHTAGvDVFRMKGK 251
                      89**************8.....8********8765443344444444 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.84   2.2e+03      15      26 ..      84      95 ..      81      96 .. 0.86
   2 ?   10.9   0.0   0.00017      0.45       5      20 ..     194     209 ..     191     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.84
                T--TTTS---CT CS
  E3_binding 15 GidLsdvkGtGp 26
                +i +++++Gt p
  EHT99414.1 84 NITIETISGTDP 95
                78899*****88 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
                 HHHHHHHHHCT--TTT CS
  E3_binding   5 PaaRklAkelGidLsd 20 
                 P +Rk A+e+G+d s 
  EHT99414.1 194 PMVRKAAEEYGVDASL 209
                 9************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 3262.91
//
Query:       EHT99415.1  [L=76]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-08   33.2   0.0      6e-08   32.3   0.0    1.5  2  HTH_23        Homeodomain-like domain
    8.2e-07   29.0   0.2    1.1e-06   28.6   0.2    1.1  1  HTH_29        Winged helix-turn helix
    0.00094   19.3   0.1     0.0012   18.9   0.1    1.1  1  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   16.4   0.1      0.012   16.1   0.1    1.2  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.027   14.2   0.0      0.034   13.9   0.0    1.2  1  HTH_38        Helix-turn-helix domain
      0.044   14.4   0.0       0.07   13.8   0.0    1.4  1  HTH_32        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0     2e-11     6e-08      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?   -2.8   0.0         2   6.1e+03      17      27 ..      49      59 ..      48      61 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2e-11
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99415.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
      HTH_23 17 GlsvreIAreL 27
                +++ + I+++L
  EHT99415.1 49 RWPFEHICALL 59
                57777788766 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   3.5e-10   1.1e-06       6      55 ..       2      49 ..       1      50 [. 0.89

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.5e-10
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99415.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                5556676.9********************************99.699985 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.1e-07    0.0012       8      52 .]       3      48 ..       1      50 [. 0.88

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.1e-07
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99415.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456999********************************96437765 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   0.1   4.1e-06     0.012      26      68 ..       8      51 ..       2      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.1e-06
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99415.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  699*********************99999999764266777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.2e-05     0.034      16      39 ..       3      26 ..       1      29 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT99415.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05      0.07       2      37 ..      24      58 ..      23      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
      HTH_32  2 vsrwlkRyneeGlegLkdrprrgrprklsdevrari 37
                + rw++ +  +G egLk  p+ gr r+++ e+  ++
  EHT99415.1 24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICAL 58
                89***************9954.57777998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 594.96
//
Query:       EHT99416.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99416.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99416.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99416.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99416.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 843.51
//
Query:       EHT99417.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99417.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1042.65
//
Query:       EHT99418.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99418.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 902.56
//
Query:       EHT99419.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99419.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99419.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99419.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99419.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 824.88
//
Query:       EHT99420.1  [L=154]
Description: hypothetical protein CKS_1480 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   19.2   0.3     0.0057   17.1   0.3    2.0  1  FidL_like  FidL-like putative membrane protein


Domain annotation for each model (and alignments):
>> FidL_like  FidL-like putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   3.2e-07    0.0057       1      90 []      73     151 ..      73     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-07
   FidL_like   1 GyadskakrlylqrkvkfsYsskresadedtYrlsisqssissiDetpdvifdkflremsdskdslllevkklndntlLlsslySPlfiC 90 
                 G++++++++++l+r v+f+Ys +     ++ Y+l   ++s    D++p++i +  +         l ++ +k  ++++L++s+  Pl++C
  EHT99420.1  73 GTVYQAGNTYILRRNVEFQYSPYI----QSLYKLDHYSVSRGLRDNVPENILNSHF-------AYLYISKIKGMEDAILVGSRVLPLIVC 151
                 889999*************76655....56899999999999*******9988777.......456666666667899999999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1139.38
//
Query:       EHT99421.1  [L=260]
Description: hypothetical protein CKS_1479 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-11   44.5   0.0    1.9e-11   43.9   0.0    1.3  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.18   11.4   0.0       0.27   10.8   0.0    1.2  1  DUF2270      Predicted integral membrane protein (DUF2270)


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.1e-15   1.9e-11       3      77 .]      30     105 ..      28     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.1e-15
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +v l+p    lLe++l++pg v+ re++l++ w+e+   ++ +++++++s +R+ ++  + +++ I tv++vG+++
   EHT99421.1  30 SVPLSPACNHLLEMFLKSPGVVLAREHILDNFWQETGaTPSFNSLNAYVSSIRRGFASLGISQDIITTVYKVGFVF 105
                  68999999***************************9999********************999***********986 PP

>> DUF2270  Predicted integral membrane protein (DUF2270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     3e-05      0.27     100     169 ..     114     181 ..     105     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3e-05
     DUF2270 100 eeLaedlrkPtlk.islleAlgrRLrrnYlwlllvlllawllkitlfkkeeesleellerAavgplpGelv 169
                 ++L  +l+ Pt + +s + Al rR rr Y + ++vllla ++ + l + +    e+ ++  +v+ ++G  v
  EHT99421.1 114 THLEPELAAPTAEpVSPTAALPRRDRRYYAAGIAVLLLAGMAVLVLSSLRP---EKSIAPVSVADVNGCEV 181
                 5788899999975499**********************9999888888777...55666667777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2087.47
//
Query:       EHT99422.1  [L=900]
Description: Mg2+ transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-42  142.5   0.2    9.9e-42  142.5   0.2    3.1  4  E1-E2_ATPase     E1-E2 ATPase
    2.5e-20   73.7   0.1    9.3e-20   71.8   0.1    2.0  2  Hydrolase        haloacid dehalogenase-like hydrolase
    4.4e-16   59.1   7.6    4.4e-16   59.1   7.6    1.7  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.5e-15   56.6   0.0    3.6e-15   55.4   0.0    1.6  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    1.9e-06   27.8   0.0    4.3e-06   26.7   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
    3.9e-05   23.5   0.0     0.0084   15.9   0.0    2.2  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.053   13.9   0.0    1.9  1  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.73   1.9e+03     106     139 ..      71     104 ..      66     128 .. 0.71
   2 !  142.5   0.2   3.9e-45   9.9e-42       3     181 .]     150     352 ..     148     352 .. 0.94
   3 ?    0.7   0.1      0.13   3.3e+02      29      58 ..     566     595 ..     562     601 .. 0.91
   4 ?   -3.6   0.0       2.6   6.5e+03     115     145 ..     766     796 ..     765     805 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.73
                   ----HHHHHHHHHHHHHHHHHHHHHHHHHHS-ST CS
  E1-E2_ATPase 106 skktplqkkldklgkvlvpvvlliallvfliall 139
                   ++ + +++ +  + + ++ v +++al+ +++ ++
    EHT99422.1  71 KAPSAFVQLILAFNNPFIYVLMVLALVSWVTDYW 104
                   5667788888888889999999999988887655 PP

  == domain 2  score: 142.5 bits;  conditional E-value: 3.9e-45
                   S--EEEEE.-TTS-EE.....EEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-..................G-TTEE-TT- CS
  E1-E2_ATPase   3 lpptakvi.rdgteee.....idakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek..................ekgdmvfsGt 74 
                     ++++v+ r++  ++     id++elvpGD++ll agd vpaD+r++ + +  + +++LTGEslpvek                  e ++++ +Gt
    EHT99422.1 150 VRTQVTVLrREEGSTTgrrhdIDMRELVPGDVILLSAGDLVPADVRLLASRDlFISQAILTGESLPVEKndlsageeiaeqpgrsvlELRNSCLMGT 246
                   567788885333333356777******************************************************************9********* PP

                   EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHH CS
  E1-E2_ATPase  75 vvvsgeakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplal 171
                   +v sg+a+a V+atg++t +g +a++++   + +t + + ++++++ l+ ++l+++ +v+li+ ++++++ +a l+ala++v+ +P+ Lp++v+  l
    EHT99422.1 247 NVASGTARALVVATGSETWFGSLAASLSGR-RPQTAFDRGVNSVSRLLIRFMLVMVPVVLLINGFTKGDWMDATLFALAVAVGLTPEMLPMIVSANL 342
                   *****************************9.99**************************************************************** PP

                   HHHHHHHHHT CS
  E1-E2_ATPase 172 algarrlakk 181
                   a ga +++++
    EHT99422.1 343 AKGAIAMSRR 352
                   ******9985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.13
                   EEEETT-B--SEEEEEEE-SEEE-TTTS-- CS
  E1-E2_ATPase  29 vllkagdrvpaDgrivegsaevdesaLTGE 58 
                   v++ +gd+  +  r++++     e++LTG 
    EHT99422.1 566 VKVLTGDNPLVTLRVCQEVGLASEAMLTGN 595
                   778899999999*****************7 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.6
                   HHHHHHHHHHHHHHHHHHHHHS-STTTSSTT CS
  E1-E2_ATPase 115 ldklgkvlvpvvlliallvflialllgksla 145
                   +++++ ++ p++ ++ +++f++++++++   
    EHT99422.1 766 IKRFMLWMGPTSSIFDVTTFALMWYVFGANH 796
                   6789999999999999999999988876654 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.7     7e+03      84     116 ..     219     264 ..     195     274 .. 0.61
   2 !   71.8   0.1   3.6e-23   9.3e-20       1     210 []     368     654 ..     368     654 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHCHHHHHH.............TTHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxx RF
   Hydrolase  84 pdlgaaigsaqsqgrtvall.............qaralavftiadp 116
                 +dl a  + a++ gr+v  l              aral v t +++
  EHT99422.1 219 NDLSAGEEIAEQPGRSVLELrnsclmgtnvasgTARALVVATGSET 264
                 3666666666666666666655555555555555555555555544 PP

  == domain 2  score: 71.8 bits;  conditional E-value: 3.6e-23
                 SSEEEEESBTTTBCHH.........HHHHHHHHHHCHHHHHHHHHH.........HHCHHHHHHHHHHHHH..HHHHHHHHHETTTE............ CS
                 xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx............ RF
   Hydrolase   1 iktvvfDkdGTLttge.........psvedvivsaalalaaaletg.........sehpigkalvaaakar..sgaltgfatfigrg............ 67 
                 +++++ Dk+GTLt+ +           ved+ v +         ++         ++    +a+ ++ ++     ++++f+++ +              
  EHT99422.1 368 MDVLCTDKTGTLTQDNiflsahlngEGVEDARVLL---------LAwlnsssqsgAKNLMDRAVLKFGEQTlsAAQCSQFQKVDELPfdfvrrrvsvvv 457
                 6899*********9995444444444444433333.........3333553454444444445555555555444446777644444666666677777 PP

                 .........HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH..........................................TTHHHHHHHHHH CS
                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................................xxxxxxxxxxxx RF
   Hydrolase  68 .........ayaigkpewltaldippdlgaaigsaqsqgrtvall..........................................qaralavftiad 115
                           +++g +e + a            +  +qg++v+ l                                          +  + +++t+ d
  EHT99422.1 458 edlqthrplLICKGAVEEMLAA----------ATTLRQGESVIPLceqkrvellnltqhynqqgfrvllvatrehgialplssndecELTIEGMLTFLD 546
                 7777777775666655544444..........22222222222223344444445677777777777777*************999988********** PP

                 THHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT............GGGESEEEEHHCES...STTTSHHHHHHHHHHHTSTGGGEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 116 plkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG............ddyfdaviasdiet...vakpspegkvaaireLqgkpeevamVGDg 199
                 p  +k+ a +a+++Lk+ g++v +ltgdnp    r+ +++G            dd  da + +++e    +    p++k ++++ Lq +++ v + GDg
  EHT99422.1 547 P--PKESAGKAIQALKDSGVKVKVLTGDNPLVTLRVCQEVGlaseamltgneiDDMSDALLRTEVERcmiFTRLTPQQKSRVLKLLQQNGHTVGFLGDG 643
                 *..****************************************9999998885555588888888889999999************************* PP

                 HHHHHHHHHTT CS
                 xxxxxxxxxxx RF
   Hydrolase 200 vnDaaalaaAg 210
                 +nDa+al++A+
  EHT99422.1 644 INDAPALREAD 654
                 *********98 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.4       4.1     1e+04     139     162 ..     295     318 ..     290     331 .. 0.49
   2 !   59.1   7.6   1.7e-19   4.4e-16       1     181 [.     723     890 ..     723     891 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.1
  Cation_ATPase_C 139 qvlivyvpglnavfgtaplsleew 162
                       +++v+vp++  + g+++ ++++ 
       EHT99422.1 295 RFMLVMVPVVLLINGFTKGDWMDA 318
                      456666665555555554444444 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 1.7e-19
  Cation_ATPase_C   1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrri.liqgllqalvtllvffltlllfgisekenklssnyaqtm 93 
                      +lp+ +iq+L+ nL++D+  +laL  ++ +++++++p +      ++ + ++r+ l++g +++++ +++f+l ++ fg++++ +   ++ +q+ 
       EHT99422.1 723 FLPMLSIQLLIQNLMYDIS-QLALPWDKMDREFLRKPRK------WDAGNIKRFmLWMGPTSSIFDVTTFALMWYVFGANHESA---QSLFQSG 806
                      58*****************.************9999777......9999999998**********************9999886...689**** PP

  Cation_ATPase_C  94 aFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvKl 181
                      +F+   lsq++ + +lr+   + ++f +      +ll ++++++  +l+ +   l+++ g++pl+++ + +++l  + ++lv++ +K+
       EHT99422.1 807 WFVEGLLSQTLVVHMLRT---QKIPFIQSCARLPVLLTTMGICAAGILLPFSS-LGTLVGLVPLPWHYFPWLVLTLFSYCLVAQGMKM 890
                      ******************...66666666666566666666666666777775.9***************************999986 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.4e-18   3.6e-15       9      69 .]      39      98 ..      32      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.4e-18
  Cation_ATPase_N  9 vlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69
                     +l  L+ ++ +GLt  ea++rl  yG+Ne+ ++k +s++v+l+ +f+np++++L+v+alvs
       EHT99422.1 39 TLSNLH-SSYEGLTHTEARARLGDYGRNEVVHEKAPSAFVQLILAFNNPFIYVLMVLALVS 98
                     677898.9***************************************************98 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.7e-09   4.3e-06      25      90 ..     419     482 ..     405     483 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.7e-09
  Cation_ATPase  25 EsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90 
                    + A l++ e+  l+  +  ++++kv e+pF+ +r+r svv++  ++ + +l++KGA e +l+  t+
     EHT99422.1 419 DRAVLKFGEQT-LSAAQ-CSQFQKVDELPFDFVRRRVSVVVEDLQTHRPLLICKGAVEEMLAAATT 482
                    66777777776.44444.4689*********************9*****************98875 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0062        16      18      72 ..     550     603 ..     544     610 .. 0.81
   2 !   15.9   0.0   3.3e-06    0.0084     194     244 ..     625     675 ..     622     681 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0062
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTE CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgk 72 
                  e++ +ai+ lk+ g+kv + TG ++  +l+v +e+gl + ++ l G  idd ++ 
   EHT99422.1 550 ESAGKAIQALKDSGVKVKVLTGDNPLVTLRVCQEVGLASEAM-LTGNEIDDMSDA 603
                  66779*******************************984333.457777666655 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.3e-06
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE- CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtk 244
                  +++k l+ +   v   GDg ND + L  a++g+ ++ a++ +k+ +d +  
   EHT99422.1 625 RVLKLLQQNGHTVGFLGDGINDAPALREADVGISVDTATDIAKESSDIILL 675
                  5778888889999999*****************************999875 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.1e-05     0.053      89     188 .]     551     651 ..     527     651 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-05
         HAD  89 galellaahraaGdrvvvvSgglrplvepllaelg.adevlatelevdd......rltgelglegkpvrg....egkvaalrewlaaegegidleevva 176
                  a ++++a ++ G++v v++g +  ++ ++++e+g a e + t  e dd      r     ++e  +++     ++k ++l+  l+++g+      +v 
  EHT99422.1 551 SAGKAIQALKDSGVKVKVLTGDNPLVTLRVCQEVGlASEAMLTGNEIDDmsdallRT----EVERCMIFTrltpQQKSRVLKL-LQQNGH------TVG 638
                 7788899999*************************6333322223444466653322....3555555552222666666666.555554......566 PP

         HAD 177 y.GDspsDlpllr 188
                 + GD+++D p+lr
  EHT99422.1 639 FlGDGINDAPALR 651
                 66*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6302.27
//
Query:       EHT99423.1  [L=524]
Description: extracellular solute-binding protein, family 5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-65  220.6   3.1    4.3e-65  220.1   3.1    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.1   3.1   2.4e-69   4.3e-65       2     374 ..      72     439 ..      71     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.1 bits;  conditional E-value: 2.4e-69
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC...TCTEEEEEEEETTEEEEEESSETT..TTTTHCHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee...dqdikkveavddytvrftlkkpna..lfltllaa 95 
                 ++p LA+s w+   D++++tf LRk++kF+ G+pl  eDv+fs+ r+++ +  ++   ++     d+ +   ++vdd++v++  ++  +  + l+ll+a
  EHT99423.1  72 LKPTLATS-WQPGSDNRSLTFALRKDAKFASGNPLRPEDVIFSLGRVVKLNLDPSFILTQLGwnkDNVDGFLKKVDDNHVQISWTANVSpaYVLSLLSA 169
                 68******.7***************************************999988755555588666666789**************775668889999 PP

                 HHHHHGC.....CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHH CS
   SBP_bac_5  96 vpasiak.....kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieql 189
                 + +si+      ++aek d  +++  ++  g+GPY++ +++  q ++l++np    +g+pk++ i +k +p+++ar++ l++G++d++ ++ +++i++l
  EHT99423.1 170 TVSSIVDektvsAHAEKGDFGNGWLTTNSAGSGPYQIRKVVMHQAVILTANPTS-PAGAPKIKNILIKNVPEPAARRLLLEQGDADIARNLGADQIASL 267
                 99999989****99***************************************4.36*************9999999999******************* PP

                 HHHTTEEEEEEEEEEEEEEEEETTT...STGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-B CS
   SBP_bac_5 190 keakglkvlyespgggvtylafNtk...kppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGyk 285
                 + ++g+k     p ++ +y++fN     +p ++++++ +A  y +D++ i+ ++l+g+  +++++lp ++ ga +++++    ydpekAk++Lk+aG++
  EHT99423.1 268 QGKSGVKT-DAIPMASLYYIQFNIGnknNPALKNPAFWEAARYLFDYKGIAGQLLKGQFDVHQTFLPKGFLGALNDNPY---SYDPEKAKAILKKAGLT 362
                 ********.****************9999*******************************************9776665...79*************** PP

                 CSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTC CS
   SBP_bac_5 286 dgdggglrekklkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssg 374
                 ++            ++l +s++p+  +ia+++q +++k G+kvev +    ++  +rvk++++   + +wgady+dp++  ++f ++ +
  EHT99423.1 363 NV-----------SFTLSTSNQPPYLDIAQALQGSFAKGGVKVEVLPGLR-SEVSTRVKAHNYEGTINAWGADYFDPNTNASSFAYNPE 439
                 *9...........7889999999999**********************77.78889************************999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3682.90
//
Query:       EHT99424.1  [L=350]
Description: dipeptide transport system permease protein/putative hemin permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-39  135.3  14.0    1.9e-39  135.3  14.0    1.5  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.39   6.9e+03     164     169 ..      30      35 ..      13      48 .. 0.49
   2 !  135.3  14.0   1.1e-43   1.9e-39       1     184 [.     129     350 .]     105     350 .] 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.39
  BPD_transp_1 164 avllln 169
                   ++l  +
    EHT99424.1  30 ITLSGL 35 
                   111112 PP

  == domain 2  score: 135.3 bits;  conditional E-value: 1.1e-43
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.......................................vilsilghlilpvii 58 
                   g+ l++laa ++++++d++ r+++ +++s+P+f+l++l +l+f                                       ++++++ hl+lpv+i
    EHT99424.1 129 GVSLALLAAWKPGSVIDNVARFISLLGYSVPVFWLGLLGLLLFyavlhwsagpgrlddiwaytlepktgfvlidswrsgdreIFWNAVAHLWLPVVI 225
                   677889999*************************999999999999************************************9999*********** PP

  BPD_transp_1  59 llllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisn 155
                   l+ll +a+++rl+r+a l++ +k++v +ara+Ga+r +i+ ++++Pn+l ++it ++l+ + ll g+vl+e++++wpG+g+ +++a+ + d+++i+ 
    EHT99424.1 226 LGLLAMAGITRLLRAALLEESSKEYVVLARAKGAGRVRILLRHIFPNVLGTLITVIALSYATLLEGSVLTETVFAWPGVGRYMTNALFSGDVPAIL- 321
                   ************************************************************************************************. PP

  BPD_transp_1 156 ggvlalviavlllnlvadilqrlldprvr 184
                   g++l ++ +++l+n++ad+l+ l dpr+r
    EHT99424.1 322 GATLLIGSCFILINALADALTWLTDPRTR 350
                   **************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2606.98
//
Query:       EHT99425.1  [L=285]
Description: binding-protein-dependent transport systems inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-31  108.0   9.0    4.7e-31  108.0   9.0    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
    4.8e-06   26.4   1.9    4.8e-06   26.4   1.9    3.2  3  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
      0.089   12.4   1.1        0.2   11.3   1.1    1.6  1  Kinocilin     Kinocilin protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.6      0.15   8.8e+02     151     170 ..      22      38 ..       6      47 .. 0.46
   2 !  108.0   9.0   7.9e-35   4.7e-31       1     182 [.     101     282 ..     101     285 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.15
  BPD_transp_1 151 seisnggvlalviavlllnl 170
                   s+++ g++l+++++++   +
    EHT99425.1  22 SLTI-GLTLVTIVILM--AV 38 
                   3222.22222222222..22 PP

  == domain 2  score: 108.0 bits;  conditional E-value: 7.9e-35
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l+Gi a+ + ++++ ++l+++++++lslP +v+a+ lv      si g + +  +++l+l+s++p++r  r++ l  + +d+  aar+ G + ++
    EHT99425.1 101 GLLVGITAG-YTGGWTERVLMRITDIFLSLPNLVIALALV------SIMGPGLMNgALALALTSWPPFARQARAETLALRRSDYLAAARMQGITGFR 190
                   799******.******************************......****888888***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldpr 182
                   +++ ++lP+ l +++  ++l++gg++ +a+ l flg    +g +  +a++g++++e+s          +++ +a+++a l++nl  d l + ld r
    EHT99425.1 191 LMFGHILPLCLLTAVVRAALSLGGIILAAAGLGFLG----MGVQPPTAEWGSMVAEGSkvifdqwwvaAAPGAAILFASLAFNLTGDGLRDRLDTR 282
                   ************************************....****************************************************9987 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   1.9     8e-10   4.8e-06      18      51 .]      25      60 ..      21      60 .. 0.88
   2 ?   -2.2   1.4      0.69   4.1e+03      17      26 ..      89      98 ..      86     109 .. 0.78
   3 ?    1.7   0.1     0.042   2.5e+02      23      37 ..     133     147 ..     132     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8e-10
      OppC_N 18 vglvilllllliaifaPliaPydp..qdliqnllpP 51
                +gl ++ +++l+a++aPliaPydp  q  + +llpP
  EHT99425.1 25 IGLTLVTIVILMAVLAPLIAPYDPnlQTISSRLLPP 60
                89**********************964444679999 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.69
      OppC_N 17 vvglvillll 26
                +v+l+++l++
  EHT99425.1 89 LVSLILILTI 98
                5788888776 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.042
      OppC_N  23 lllllliaifaPlia 37 
                 +++l+l++i +P + 
  EHT99425.1 133 VIALALVSIMGPGLM 147
                 6889********984 PP

>> Kinocilin  Kinocilin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.1   3.4e-05       0.2      29      53 ..     201     225 ..     183     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.4e-05
   Kinocilin  29 igvsvskaaaavggifigaaglgll 53 
                 +  +v +aa ++ggi++ aaglg+l
  EHT99425.1 201 LLTAVVRAALSLGGIILAAAGLGFL 225
                 456899*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2220.72
//
Query:       EHT99426.1  [L=275]
Description: ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-22   79.2   0.0    5.8e-22   78.7   0.0    1.2  1  ABC_tran      ABC transporter
    7.6e-07   28.8   0.1      4e-06   26.4   0.1    1.9  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00022   21.5   0.4     0.0028   17.9   0.4    2.1  1  AAA_22        AAA domain
    0.00098   18.6   0.0     0.0035   16.8   0.0    1.8  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.002   18.0   0.7      0.076   12.8   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
  ------ inclusion threshold ------
      0.014   15.3   0.8       0.48   10.3   0.0    2.7  3  NACHT         NACHT domain
      0.019   15.3   0.8      0.064   13.6   0.8    1.9  1  AAA_16        AAA ATPase domain
      0.054   13.2   0.1       0.11   12.3   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.059   13.3   0.1        0.1   12.5   0.1    1.3  1  RsgA_GTPase   RsgA GTPase
       0.13   11.8   0.0       0.22   11.0   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.14   12.7   0.2       0.26   11.8   0.2    1.5  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
       0.19   11.8   0.0       0.37   10.9   0.0    1.5  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
        0.3   11.2   0.1        0.3   11.2   0.1    1.5  2  DUF87         Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   4.2e-25   5.8e-22       2     137 .]      21     178 ..      20     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 4.2e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 +n+s+++ + e+va+vGe+G+GKS  +++l+gll+p    ++ ++++ g++          +   ++++++ q+    l+p  t++ +           
  EHT99426.1  21 DNISFSIGR-ERVALVGESGSGKSLTAQTLMGLLSPalhlQASQLQVAGENALAlnerGWSKLRGERVAMVMQDpkYALNPSRTIGWQveeplilhrrl 118
                 789999976.89************************9999999999998888877776667777889*******88889999998888999******** PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    +++e++ ++l+ +gl++ + + ++  p++LSgG+ qrv+la al+++p +l++DEpt+
  EHT99426.1 119 sraARKEKVCDMLDAVGLPN-PRQLMQVYPHQLSGGMGQRVMLAIALITDPAFLIADEPTS 178
                 99999999************.88899999******************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   2.9e-09     4e-06      19     213 ..      24     225 ..      17     229 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.9e-09
                 EEETTSSEEEEEESTTSSHHHHHHHHHHHCTT....TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  19 ilpfsksftaivGpNGSGKsnlldAilFvLGer...sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykin 114
                 +  + ++  a+vG+ GSGKs   + ++ +L+ +   +a++l+ +  ++l  +++  +++   +v++++++++ +    +++ +i  +v++    + ++ 
  EHT99426.1  24 SFSIGRERVALVGESGSGKSLTAQTLMGLLSPAlhlQASQLQVAGENALALNERGWSKLRGERVAMVMQDPKYA---LNPSRTIGWQVEEPLILHRRL- 118
                 5666777889**********999999888884333345566666667777777777888888999999877777...223333333333333222222. PP

                 TEEE-HHHHHHHHHCTT-STT.........CS-HH..HHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH..CTTSEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxx.........xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       SMC_N 115 gkevtkkevsellesagiske.........lLSgG..ektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek..sknaQfivislree 200
                  + ++k++v ++l  +g+            +LSgG  ++ ++a+aL+         ++ + De  +aLD++ + +v +l++e   s n+ ++ is++ +
  EHT99426.1 119 SRAARKEKVCDMLDAVGLPNPrqlmqvyphQLSGGmgQRVMLAIALI------TDPAFLIADEPTSALDHAMRDQVLSLIRELveSRNMGLLLISHDLQ 211
                 234445555555555554433444444444****7336777777777......55679999********************852266799******987 PP

                 HCCC-.SCEEEEEE CS
                 xxxxx.xxxxxxxx RF
       SMC_N 201 mleka.dklvgvtk 213
                 ++++  ++++ ++k
  EHT99426.1 212 QVSEHcERVMVMYK 225
                 77665266665554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.4     2e-06    0.0028       8     128 ..      32     206 ..      28     213 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglelka.................................. 70 
                 ++++GesG+GK++++++l+  l  + + +  + +v+     + ++ ++++l+ e +  + ++ k+                                  
  EHT99426.1  32 VALVGESGSGKSLTAQTLMGLLSPALHLQASQLQVAgeNALALNERGWSKLRGERVAMVMQDPKYalnpsrtigwqveeplilhrrlsraarkekvcdm 130
                 579****************99965544444333333433333333356666544444444444444666666666666666666666667777777777 PP

      AAA_22  71 ...............erlsseellealeqalrarav........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                                ++       ++l   + +r +        +++li DE    l+   ++++l+ +r+l++  + ++ l+L+
  EHT99426.1 131 ldavglpnprqlmqvYP-------HQLSGGMGQRVMlaialitdPAFLIADEPTSaLDhamRDQVLSLIRELVE--SRNMGLLLI 206
                 77776664334444433.......33333333333355555556899999997777766556999999999999..888888886 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.5e-06    0.0035      20      54 ..      27      61 ..      14      83 .. 0.81
   2 ?   -1.7   0.0       1.2   1.6e+03     177     198 ..     142     163 ..     137     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
  Mg_chelatase 20 aGgHnlllvGppGsGKtmlakrlpsllpplseeea 54
                  +G+  + lvG +GsGK++ a+ l++ll+p  + +a
    EHT99426.1 27 IGRERVALVGESGSGKSLTAQTLMGLLSPALHLQA 61
                  689999*********************98765443 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
  Mg_chelatase 177 eierYlsklsgplldRidlqve 198
                    ++ Y ++lsg +  R+ l ++
    EHT99426.1 142 LMQVYPHQLSGGMGQRVMLAIA 163
                   5678999*********999886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.031        43       3      25 ..      33      55 ..      32      95 .. 0.78
   2 !   12.8   0.1   5.5e-05     0.076     231     298 ..     144     209 ..      90     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.031
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                +l+G  gsGKS   ++l +l + 
  EHT99426.1 33 ALVGESGSGKSLTAQTLMGLLSP 55
                79*********999998777654 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.5e-05
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++ +++lS G+ +   l+ al+ ++   ++l+ DEp + L++++   +l l++el + ++  ++l +H+
  EHT99426.1 144 QVYPHQLSGGMGQRVMLAIALITDP---AFLIADEPTSALDHAMRDQVLSLIRELVEsRNMGLLLISHD 209
                 4679999999988866777777766...9***********************77777699999999998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00035      0.48       2      24 ..      31      53 ..      30      63 .. 0.89
   2 ?    2.4   0.0     0.096   1.3e+02      38     126 ..     114     206 ..     105     226 .. 0.69
   3 ?   -1.4   0.0       1.4   1.9e+03     114     132 ..     238     256 ..     229     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
                CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklalaw 24
                 v+l Ge+GsGK+  +q l+ ++
  EHT99426.1 31 RVALVGESGSGKSLTAQTLMGLL 53
                689***************99765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.096
                 EEEETTTTTTS-...-HCHHHCCCCTS--SSS-C.............CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EE CS
       NACHT  38 Fflslrelsrsgnarsladllfsqlpepaapvse.............vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasl 123
                 ++ +l++  r++    ++d+l +++++  ++  +             v+  ++ + + + li   +De  + l+++ + +v  l++el++    ++  l
  EHT99426.1 114 LHRRLSRAARKE---KVCDMLDAVGLPNPRQLMQvyphqlsggmgqrVMLAIALITDPAFLI---ADEPTSALDHAMRDQVLSLIRELVES---RNMGL 203
                 555555555554...55777777766666666666667777777777888888888888888...56777777777778888888888877...55555 PP

                 EEE CS
       NACHT 124 llt 126
                 ll+
  EHT99426.1 204 LLI 206
                 554 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.4
                 CTTTTT--EEEEEEECCCH CS
       NACHT 114 rkkllpeasllltvrpral 132
                 +++  p ++ l+++rp++ 
  EHT99426.1 238 PRATHPYTRTLWSCRPSKA 256
                 5667788999******986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   4.7e-05     0.064      22      51 ..      28      56 ..      13     224 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.7e-05
      AAA_16 22 grpelvllsGesGvGKsslvrellralekd 51
                gr e v l+GesG+GKs  +++l+  l+ +
  EHT99426.1 28 GR-ERVALVGESGSGKSLTAQTLMGLLSPA 56
                44.7899****************9877776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.6e-05      0.11      17      49 ..      25      56 ..      18      62 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.6e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                ++i ++  + l+G+sGsGKS     ++ lL pa
  EHT99426.1 25 FSIGRE-RVALVGESGSGKSLTAQTLMGLLSPA 56
                455544.599**********7776777777665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.6e-05       0.1      77     127 ..       7      61 ..       2      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.6e-05
                  SEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHH....HHHHHHCTT----- CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkdktsvlvGqSGvGKS....tLinallpelelkt 127
                  +e l ++++  + +++++  +  + ++lvG+SG GKS    tL+  l p l+l+ 
   EHT99426.1   7 VESLSIRSEAATLVDNISFSIGRERVALVGESGSGKSltaqTLMGLLSPALHLQA 61 
                  566777788888999*********************9666667777777666655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016      0.22      33      58 ..      29      54 ..       9      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
       AAA_7 33 kkpvllvGptGtGKtviikdllkkld 58
                +  v lvG++G+GK++++++l+  l+
  EHT99426.1 29 RERVALVGESGSGKSLTAQTLMGLLS 54
                56799***************997776 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00019      0.26      12      39 ..     239     266 ..     232     275 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
   oligo_HPY  12 eplHPYTkaLlrsvprldrekdklekik 39 
                 ++ HPYT++L ++ p+   + ++l+ ++
  EHT99426.1 239 RATHPYTRTLWSCRPSKATHGQPLPVLD 266
                 678************9998888666555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00027      0.37       6     113 ..      36     233 ..      32     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.....HTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx............................................. RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlai.....leglendiep............................................. 54 
                 + +G+GK+ +a +L+ +l+   l+ ++  +++ ++n+                +                                             
  EHT99426.1  36 GESGSGKSLTAQTLMGLLSP-ALHLQASQLQVAGENALAlnergWS-------Klrgervamvmqdpkyalnpsrtigwqveeplilhrrlsraarkek 126
                 78*****************9.9999999999999998755543322.......1233355678899999999999999999999999999999999999 PP

                 .........................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHH CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkea 96 
                                                                           ++++l l+++l+++     + +g++l  +d +    + +e+
  EHT99426.1 127 vcdmldavglpnprqlmqvyphqlsggmgqrvmlaialitdpafliadeptsaldhaMRDQVLSLIRELVES-----RNMGLLLISHDLQ----QVSEH 216
                 999999999999999999999999999999999999999999999999999999888777777777777776.....4577777777655....66666 PP

                 HHHHHHHCTS-EEEEEE CS
                 xxxxxxxxxxxxxxxxx RF
        CbiA  97 leelkqrygvpvlgvip 113
                 +e+++ +y+ +vl+ +p
  EHT99426.1 217 CERVMVMYKGRVLDTLP 233
                 66666666777777666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022       0.3      24      45 ..      30      51 ..      26      59 .. 0.87
   2 ?   -4.0   0.2       9.5   1.3e+04      42      58 ..     190     206 ..     188     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
       DUF87 24 rHlAilgsTGsGKSntvavLle 45
                +++A +g++GsGKS t+  L+ 
  EHT99426.1 30 ERVALVGESGSGKSLTAQTLMG 51
                689**************99975 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9.5
       DUF87  42 vLleellekkgatilil 58 
                 +L++el+e+++  +l++
  EHT99426.1 190 SLIRELVESRNMGLLLI 206
                 79999999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1981.87
//
Query:       EHT99427.1  [L=227]
Description: ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-32  111.6   0.0    5.1e-32  111.2   0.0    1.1  1  ABC_tran     ABC transporter
    1.2e-12   48.3   4.0    4.9e-09   36.4   0.2    2.8  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.7e-05   24.3   0.0    0.00012   21.6   0.0    1.9  1  SMC_N        RecF/RecN/SMC N terminal domain
    2.7e-05   24.6   0.0    4.4e-05   23.9   0.0    1.3  1  AAA_16       AAA ATPase domain
    3.2e-05   24.4   0.0       0.11   12.9   0.0    2.2  2  AAA          ATPase family associated with various cellular a
     0.0034   17.4   0.1        2.3    8.2   0.0    2.3  2  AAA_5        AAA domain (dynein-related subfamily)
     0.0056   17.0   1.5      0.065   13.5   1.5    2.2  1  AAA_22       AAA domain
     0.0093   15.4   0.1       0.24   10.8   0.0    2.2  2  TniB         Bacterial TniB protein
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.025   14.5   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
      0.052   13.3   0.0        0.1   12.4   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
       0.21   11.9   0.1          2    8.7   0.1    2.1  1  SbcCD_C      Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   3.2e-35   5.1e-32       2     137 .]      22     169 ..      21     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 3.2e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqe..pqlfpeltvren...........esdeei 85 
                 ++v+l++++ge+ ++vG++G+GKS+Ll ++agl    +G+++l g+++      +  lr+e+++++q+  ++l p++++r++           + d++i
  EHT99427.1  22 HDVNLQVNAGECFGLVGPSGCGKSSLLWVMAGLNPHWQGDMQLAGHKVLPgkSFTGALRQEVQMVFQDpyASLHPRHRLRRTlseplnllkrdNIDDRI 120
                 79*********************************************9998788899***********999******999999******9666666666 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++  +++gl+    + +++ p++LSgGq+qrva++rall +pk+lllDEpt+
  EHT99427.1 121 HEGFRHVGLDP---SLADRYPHQLSGGQRQRVAIVRALLLQPKILLLDEPTS 169
                 66666666555...6777779*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00024      0.39       3      28 ..      35      57 ..      33      84 .. 0.81
   2 ?    1.6   0.1      0.12   1.9e+02     262     283 ..      86     109 ..      76     118 .. 0.77
   3 !   36.4   0.2     3e-12   4.9e-09     228     303 .]     132     205 ..     112     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrd 28
                +l+Gp g+GKS+LL  + +l   +++
  EHT99427.1 35 GLVGPSGCGKSSLLWVMAGL---NPH 57
                79************888877...555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
      AAA_21 262 liDEpEngLHP..kllrrllellk 283
                 ++ +p ++LHP  +l r+l e l+
  EHT99427.1  86 VFQDPYASLHPrhRLRRTLSEPLN 109
                 7889*******8666677765544 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 3e-12
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpllld 303
                 +  ++ +++lS G+++  a++ all ++   ++ll+DEp + L+ ++++++l ll++l+r  g   +l++H+p ++d
  EHT99427.1 132 SLADRYPHQLSGGQRQRVAIVRALLLQP---KILLLDEPTSALDMSIQAEILNLLNDLKRqDGLTMVLVSHDPDVID 205
                 55678899*****************999...9***********************888888************9987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.4e-08   0.00012      28     213 ..      35     216 ..       3     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.4e-08
                 EEEESTTSSHHHHHHHHHHHCTT.TT...TTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersa...kklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                  +vGp G+GKs+ll    +v+   +      ++    ++++   k+   + + ev+++f+++ ++       +  + r+ r+ +    + +++     +
  EHT99427.1  35 GLVGPSGCGKSSLL----WVMAGLNPhwqGDMQ-LAGHKVLPG-KSFTGALRQEVQMVFQDPYAS-------LHPRHRLRRTLSEPLNLLKRDNIDDRI 120
                 499********875....666543330002232.233455555.89999999********99999.......444444445555556677777778899 PP

                 HHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-.SCEEEEE CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 124 sellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemleka.dklvgvt 212
                 +e ++++g++++       +LSgG+++ va+  + A+   +p+ + llDe  +aLD +  +++ +ll+  ++++   ++ +s++ +++ ++ d+ v++ 
  EHT99427.1 121 HEGFRHVGLDPSladryphQLSGGQRQRVAI--VRALL-LQPK-ILLLDEPTSALDMSIQAEILNLLNdlKRQDGLTMVLVSHDPDVIDHMcDRAVRMA 215
                 9999999999999999999*******97665..44443.4554.779*********************444455589999*****99999878888876 PP

                 E CS
                 x RF
       SMC_N 213 k 213
                 +
  EHT99427.1 216 Q 216
                 5 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.7e-08   4.4e-05      18     164 ..      27     188 ..      14     198 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.7e-08
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd........ggiflrgkcdql..esaipy...salaqalareellrqlldeaesaeleawreklee 103
                 +v++g  e+  l+G+sG+GKssl++  +  l+ +        g  +l gk      ++++ +   +++a++  r++l r l ++++  +++  +++++e
  EHT99427.1  27 QVNAG--ECFGLVGPSGCGKSSLLWVMA-GLNPHwqgdmqlaGHKVLPGKSFTGalRQEVQMvfqDPYASLHPRHRLRRTLSEPLNLLKRDNIDDRIHE 122
                 45555..7899*************9999.56666666688875666777766665544455566566*******999999*999999999********* PP

      AAA_16 104 ala.......avpelagaea..........srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                  ++                a          +r + ++ r+l  l    +p +l+lD+   a ++s q+ + +Ll +l++
  EHT99427.1 123 GFRhvgldpsL--------AdryphqlsggQRQRVAIVRAL--L---LQPKILLLDEPTSALDMSIQAeILNLLNDLKR 188
                 99955555440........3234433333333333333333..1...22457777777777777777766666655554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00077       1.3       3      52 ..      36      89 ..      34      99 .. 0.73
   2 !   12.9   0.0   6.8e-05      0.11      41     125 ..     140     215 ..     126     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00077
                EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCS..SSSTTHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelg..vefleisgsell..skyvgesekkirelfke 52
                l+Gp G+GK++l   +a      +  +++ g+++l  +++ g+  ++++++f++
  EHT99427.1 36 LVGPSGCGKSSLLWVMAGLNPhwQGDMQLAGHKVLpgKSFTGALRQEVQMVFQD 89
                89*********9987776631323347777777776334778888888888875 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSS CS
         AAA  41 esekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr.gRfd 125
                 + +   r+ ++ +++   +p+il++DE  +    +          +++++l+ l+++k++++ +++++++++pd +d    r  R+ 
  EHT99427.1 140 QLSGGQRQRVAIVRALLlQPKILLLDEPTSALDMS----------IQAEILNLLNDLKRQDG-LTMVLVSHDPDVIDHMCDRaVRMA 215
                 55556666666666666889*******99998888..........**************766.**************9888777765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0014       2.3       4      20 ..      36      52 ..      34      63 .. 0.86
   2 !    7.1   0.0    0.0032       5.2      57     103 ..     149     195 ..     134     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0014
                EE--SSSSHHHHHHHGG CS
       AAA_5  4 LvGppGtgKselaerla 20
                LvGp+G+gKs+l   +a
  EHT99427.1 36 LVGPSGCGKSSLLWVMA 52
                9*********9976665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0032
                 --------.G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE..-SSSEE CS
       AAA_5  57 splvraar.egeilvlDEverae.sevlnsLlslleerrllleeggelv 103
                  ++vra   +++il+lDE + a   +++++ l+ll++ +++  +g + v
  EHT99427.1 149 VAIVRALLlQPKILLLDEPTSALdMSIQAEILNLLNDLKRQ--DGLTMV 195
                 56677776899*********99989************9998..666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.5     4e-05     0.065      10     128 ..      36     197 ..      29     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsst.sskdllrellralglelka.................... 70 
                 ++G+sG+GK+ ll  ++  ++ ++   +                 ++++ vf ++ +s   +  l+r l + l+l + +                    
  EHT99427.1  36 LVGPSGCGKSSLLWVMAGLNPHWQGDMQlaghkvlpgksftgalrQEVQMVFQDPYASLhPRHRLRRTLSEPLNLLKRDniddrihegfrhvgldpsla 134
                 89***********99999999887666688888888888888876444444444444443333334444444444444477788888888888778888 PP

      AAA_22  71 ..erlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                   ++++++   ++    +ra    +++l++DE    l+   ++e+l+ L +l    ++g++++Lv
  EHT99427.1 135 drYPHQLSGGQRQRVAIVRALLLqPKILLLDEPTSaLDmsiQAEILNLLNDLKR--QDGLTMVLV 197
                 77444444444443344444444667******9999988555999999999999..*******98 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.052        85      37      52 ..      33      48 ..      22      69 .. 0.84
   2 !   10.8   0.0   0.00015      0.24     117     160 ..     156     197 ..     125     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.052
        TniB 37 nlllvGdsnnGKtmiv 52
                +  lvG+s +GK++++
  EHT99427.1 33 CFGLVGPSGCGKSSLL 48
                7789*********987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00015
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                  l++++L++DE  ++l   ++ q e+ln+l  L+++  +++vlv
  EHT99427.1 156 LLQPKILLLDEPTSAL--DMSIQAEILNLLNDLKRQDGLTMVLV 197
                 3799************..778899************99999998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.6e-05     0.025      79     121 ..       6      53 ..       1      76 [. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
                  EEE--TTTHTTHHHHHHHCT....T.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  79 vllvsaktkegleelkellk....d.ktsvlvGqSGvGKStLinallp 121
                   l vs k++ +l+++ + ++      ++  lvG+SG GKS+L+ ++++
   EHT99427.1   6 HLSVSHKQGYDLRTVVHDVNlqvnAgECFGLVGPSGCGKSSLLWVMAG 53 
                  555556655555555443331111236778************987765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05       0.1      15      39 ..      24      48 ..       6      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                  ++++  + + l+GpsG GKS+ll
  EHT99427.1 24 VNLQVNAGECFGLVGPSGCGKSSLL 48
                556666555888***********98 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0012         2      63      89 ..     158     184 ..     130     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 ++++++LDE  s lD   +a++l+ll+
  EHT99427.1 158 QPKILLLDEPTSALDMSIQAEILNLLN 184
                 3789*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1604.87
//
Query:       EHT99428.1  [L=181]
Description: spermidine N1-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-21   77.6   0.1    1.7e-21   77.3   0.1    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      3e-15   56.5   0.2    4.3e-15   56.0   0.2    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    9.6e-10   38.8   0.3    1.9e-09   37.8   0.3    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    7.8e-08   32.1   0.1      2e-07   30.8   0.1    1.6  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    3.3e-07   30.6   0.5      4e-07   30.3   0.5    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    4.1e-07   30.0   0.4    5.5e-07   29.6   0.4    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      4e-06   26.7   0.0    7.3e-06   25.9   0.0    1.5  1  FR47             FR47-like protein
     0.0042   16.7   0.0     0.0087   15.7   0.0    1.6  1  GNAT_acetyltran  GNAT acetyltransferase
  ------ inclusion threshold ------
      0.013   15.6   0.5      0.076   13.2   0.1    2.2  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   8.6e-25   1.7e-21       2     138 .]       3     137 ..       2     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 8.6e-25
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry.lpepltleea.eewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgk 94 
                     + Lrpl+ eDl  +++l ++  vmry + ep++   +  ++++++ ++   +++  ++++  +++  G v l ++++ +++ae+ ++++p+++gk
      EHT99428.1   3 IRLRPLEREDLHFVHQLDNNASVMRYwFEEPYEAFVElSDLYDKHIHD---QTERRFVVE-HEGQKAGLVELVEINHVHRRAEFQIIIDPAHQGK 93 
                     68***********************86666665544414444443433...355669994.44436***************************** PP

  Acetyltransf_3  95 GyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     G+at a++ +++y f+ l+l +l+  +d+eNe+ i ++ klGfe
      EHT99428.1  94 GLATQAAKLAMDYGFSVLNLYKLYLIVDQENEKAIHIYSKLGFE 137
                     *******************************************7 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2   2.1e-18   4.3e-15       8     117 .]      30     136 ..      16     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 2.1e-18
                     HHHHTHHHHHHHHHHH...HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEE CS
  Acetyltransf_1   8 lvesffppnedaseee...feesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkiv 98 
                     ++e+++     a++e    + +  ++++e+ +v+e++g+ +G + l  i++   ++ +  ++ ++p+++gkGl+++  + ++++ ++  +++k++
      EHT99428.1  30 FEEPYE-----AFVELsdlYDKHIHDQTERRFVVEHEGQKAGLVELVEINH--VHRRAEFQIIIDPAHQGKGLATQAAKLAMDYGFSVlNLYKLY 117
                     222222.....222223335555788999**********************..7889999*********************************** PP

                     EEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  99 laveedndaairlYeklGF 117
                     l v++ n++ai+ Y klGF
      EHT99428.1 118 LIVDQENEKAIHIYSKLGF 136
                     **************99**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.3   9.5e-13   1.9e-09       5      75 ..      55     137 ..      51     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 9.5e-13
                     EEEEEETTEEEEEEEEEEES..TCTEE.....EEE-GGGTTSSHHHHHHHHTT.SEEE..EE.EEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld..aeitr.....laVdpeyrgkGiGraLleaae.kgii..le.qlel....naekaikfYeklGFe 75 
                      fV+e++g+  G + l++++  +   r     + +dp+++gkG++++  ++a   g+      +l+l    ++ekai+ Y klGFe
      EHT99428.1  55 RFVVEHEGQKAGLVELVEINhvH---RraefqIIIDPAHQGKGLATQAAKLAMdYGFSvlNLyKLYLivdqENEKAIHIYSKLGFE 137
                     589**********9999998541...235677****************99633444222212344555443334***********8 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1     1e-10     2e-07       4     141 ..      11     140 ..       9     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1e-10
                     GGHHHHHHHCTSCCCHHHH----.-H.HHHHHHHH.HHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTT CS
  Acetyltransf_8   4 aDlellhrWmnrprvaewweeag.tl.eevrella.kldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkg 95 
                     +Dl+ +h+  n+  v+++w e+  ++  e+ +l++ ++ +d++ + ++++++g+ +g++e+ ++++               + ++i ++++ gkg
      EHT99428.1  11 EDLHFVHQLDNNASVMRYWFEEPyEAfVELSDLYDkHI-HDQTERRFVVEHEGQKAGLVELVEINHV---------HRRAEFQIII-DPAHQGKG 94 
                     89999999999999999995554244577788888355.6***************************.........2233345555.67888*** PP

                     CHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  96 lttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     l+t+  +  ++y f+     +  +  d +Ne+ai+++ k+Gfe e+
      EHT99428.1  95 LATQAAKLAMDYGFSVLNLYKLYLIVDQENEKAIHIYSKLGFEIEG 140
                     ******************************************9887 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.5     2e-10     4e-07       2     152 ..       6     154 ..       5     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2e-10
  Acetyltransf_4   2 raateeDakeilaiyaey.vvntaitfeyev..ssveefekflealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeg 93 
                     r +++eD+    ++ ++  v+++ +++ ye   +  + ++k +++   + e+ f v+ +++ +G   l++++       ae ++ ++  + + +g
      EHT99428.1   6 RPLEREDLHFVHQLDNNAsVMRYWFEEPYEAfvELSDLYDKHIHD---QTERRFVVEHEGQKAGLVELVEINH--VHRRAEFQIIID-PAHQGKG 94 
                     556777777777777555255555554442221444445566666...6889999******************..8999*******6.89***** PP

  Acetyltransf_4  94 lgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                     l+ +  ++ +++  +  n+ +l+  +  +ne++i ++++lGFe++g +k  + +ng++ +
      EHT99428.1  95 LATQAAKLAMDYGfSVLNLYKLYLIVDQENEKAIHIYSKLGFEIEGVLKHEFFINGEYRN 154
                     ************88******************************************9965 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.4   2.7e-10   5.5e-07      16     111 ..      37     141 ..      18     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.7e-10
  Acetyltransf_10  16 fisp.ealrerieegealllvaeeggkivGvielrdgshisll.....fVdpeyrgqGigkaLleaveee.aekdgikl.eltvnasp.yavpf 100
                      f++  + ++++i+++    +v+e +g+ +G +el + +h+++      ++dp+++g+G++++  + + ++ ++  ++ +  l v++ + +a+ +
       EHT99428.1  37 FVELsDLYDKHIHDQTERRFVVEHEGQKAGLVELVEINHVHRRaefqiIIDPAHQGKGLATQAAKLAMDYgFSVLNLYKlYLIVDQENeKAIHI 130
                      333336677788999*******************999999985555559****************999999766666667************** PP

  Acetyltransf_10 101 YeklGFkavge 111
                      Y klGF+  g 
       EHT99428.1 131 YSKLGFEIEGV 141
                      ******97765 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.6e-09   7.3e-06      26      79 ..      83     138 ..      63     147 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.6e-09
                 EEEE-GGG-SSSHHHHHHH.HHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  26 alqvlpehrrrGlgsrlvk.alakeiae.rgktvllvvvasNtpsirlyeklGfek 79 
                  + ++p h+++Gl+++ +k a+ ++ +  + +++ l+v ++N+++i++y+klGfe 
  EHT99428.1  83 QIIIDPAHQGKGLATQAAKlAMDYGFSVlNLYKLYLIVDQENEKAIHIYSKLGFEI 138
                 57899***********9987999*****8899**********************85 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-06    0.0087     178     237 ..      76     139 ..      56     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
  GNAT_acetyltran 178 yekgieieidTkedyrrkgLAtivaaalileclk....rglyPsWDaaneaSvaLaekLGYefe 237
                      +++ +e +i  ++++++kgLAt +a+   +  +      +ly   D +ne+++++++kLG+e e
       EHT99428.1  76 VHRRAEFQIIIDPAHQGKGLATQAAKLAMDYGFSvlnlYKLYLIVDQENEKAIHIYSKLGFEIE 139
                      678899*****************9998887765522224788888999*************976 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.8e-05     0.076       1      52 [.      55     106 ..      55     107 .. 0.78
   2 ?   -0.2   0.0      0.56   1.1e+03      63      75 ..     158     170 ..     150     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
  Acetyltransf_CG   1 rfeltldegeevafleY.evrkegvldfthTeVpeelrGkGiAkkLvkaaldd 52 
                      rf ++ + g++++ +e  e ++ ++++   ++++++++GkG+A + +k a+d+
       EHT99428.1  55 RFVVEHE-GQKAGLVELvEINHVHRRAEFQIIIDPAHQGKGLATQAAKLAMDY 106
                      5666666.67778888744455557777889*******************998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
  Acetyltransf_CG  63 tCsyvaaylekhp 75 
                       C + ++yle+h+
       EHT99428.1 158 MCIFQHQYLERHK 170
                      79999*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1263.54
//
Query:       EHT99429.1  [L=139]
Description: hypothetical protein CKS_1470 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0029   17.5   0.0      0.031   14.2   0.0    2.2  1  PEGA      PEGA domain
  ------ inclusion threshold ------
       0.13   12.8   1.0       0.22   12.1   1.0    1.4  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> PEGA  PEGA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.4e-06     0.031       3      56 ..      27      93 ..      25      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-06
        PEGA  3 tltirSnpeGatVyidGkylG......kTPvtlsleaGnys........lrvekeGYedlektvtvta 56
                ++ i+S+p+Ga+ ++   ++G       TP t+ le+ +++        l +e +GY +++  ++ +a
  EHT99429.1 27 SVLIDSQPPGARFTVQ-DETGrpvaegYTPKTVILEKSTHRyfgkkhylLMLESPGYVPVTVPIEARA 93
                689************5.57776666669******9998775445555558999999998887776655 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   2.5e-05      0.22       1      18 []       1      18 [.       1      18 [. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.5e-05
      LPAM_1  1 MKKillalgalllLsGCs 18
                MK  +lal a+ lLsGC+
  EHT99429.1  1 MKQHILALAAAMLLSGCA 18
                99***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1112.62
//
Query:       EHT99430.1  [L=311]
Description: homocysteine S-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-80  271.4   0.1    1.2e-80  271.2   0.1    1.0  1  S-methyl_trans  Homocysteine S-methyltransferase
  ------ inclusion threshold ------
      0.013   15.1   0.4        0.1   12.2   0.1    2.5  3  Kelch_1         Kelch motif


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.2   0.1   1.3e-84   1.2e-80       1     267 [.      16     307 ..      16     308 .. 0.90

  Alignments for each domain:
  == domain 1  score: 271.2 bits;  conditional E-value: 1.3e-84
                     EEB---SHHHHHHT.----STTHHCCHH.H-HHHHHHHHHHHHHHT-SEEE-TTTT--GG.....T--HHHHH.HHHHHHHHHHHHHHHHH.... CS
  S-methyl_trans   1 lilDGgmgteLerr.adlseelwsaell.trpelikeihrdyleaGadiieTnTyqaskik....gleeeeeveelnraavelareaadeaaa.. 87 
                     lilDG+++teLe+r +dl+++lwsa++l  +peli+++h+dy++aGa+++ T++yqa+++     gl+ e++  +l+ ++vela++a++++ a  
      EHT99430.1  16 LILDGALATELEARgCDLTDALWSAKVLmENPELIYQVHYDYFAAGARCAITASYQATPQGfaarGLN-EQQSLALIAQSVELAQRARADYLAtq 109
                     79**************************77****************************5444444886.455559****************7777 PP

                     ......HEEEEE--HHHHCTS.-.--....--HHHHHHHHHHHHHHHHHCT-SEEEEEEE--HHHHHHHHHHHT.T--...EEEEE-ECCT.TET CS
  S-methyl_trans  88 ....plfvagsvGpygatlsd.g.yd..l.lsfeelveahreqiralleagvDlllietipdlleakaavellaaelp...vwisftikdestlr 170
                          l vagsvGpyga+l+d + y   + l ++e++++hr++i+all+agvD+l++et+p+++ea+ +v+ll++ +p   +w+sft++d+++l+
      EHT99430.1 110 tddrILLVAGSVGPYGAFLADgSeYRgdYtLPEAEMMAFHRPRIAALLAAGVDVLACETLPSFAEAQTLVNLLRE-FPdscAWFSFTLRDAEHLS 203
                     7765444**************634534435********************************************9.57777********9966** PP

                     TS-BHHH.HHHHHCT-TEEEEEEES--GGGHHHHHHHHHTT--S-.EEEE---.S-----------....-.........HHHTTEEEE---TT- CS
  S-methyl_trans 171 sGetleeavaalaaatqplavgvNCakpeelepllkelksetalpavivypnsagevydltpeewaesaee.........wleaganiiGGCCgt 256
                     +G++l++++a l a+ q +avg+NC   + ++p+l++l++ t++p ++vypns ge+yd+++++w++   +         w +aga++iGGCC+t
      EHT99430.1 204 DGTPLRDVAAYLNAQPQVIAVGINCIALDSVTPALQQLQRLTEKP-LVVYPNS-GEQYDTNSKSWHSAPSGctlhdkfaeWQQAGARLIGGCCRT 296
                     *******66666666577********************8888888.99****8.************88777************************ PP

                     -HHHHHHHHH. CS
  S-methyl_trans 257 tpehIraiaea 267
                     +p++I+aia+ 
      EHT99430.1 297 SPRDIAAIARH 307
                     ********975 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.11     1e+03       1      22 [.     101     122 ..     101     133 .. 0.82
   2 ?   12.2   0.1   1.1e-05       0.1      25      44 ..     252     271 ..     250     272 .. 0.92
   3 ?   -2.5   0.0      0.43   3.9e+03      17      22 ..     290     295 ..     289     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.11
                 BBBSEEEEEETTEEEEEEEBCS CS
     Kelch_1   1 aragagavvvggkiYviGGsdg 22 
                 ara + a+  +++i  + Gs g
  EHT99430.1 101 ARADYLATQTDDRILLVAGSVG 122
                 5888889999********9987 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.1e-05
                 BEEEEEEEETTTTEEEEECC CS
     Kelch_1  25 alssvevyDpetntWrelps 44 
                 + +s e yD+ +++W+ +ps
  EHT99430.1 252 YPNSGEQYDTNSKSWHSAPS 271
                 679***************98 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.43
                 EEEBCS CS
     Kelch_1  17 iGGsdg 22 
                 iGG+++
  EHT99430.1 290 IGGCCR 295
                 9**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.46
# Mc/sec: 2027.72
//
Query:       EHT99431.1  [L=468]
Description: amino acid permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.5e-118  394.0  42.0   9.5e-118  393.8  42.0    1.0  1  AA_permease    Amino acid permease
    6.4e-45  153.7  48.6    8.2e-45  153.4  48.6    1.0  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.043   13.5   0.5      0.043   13.5   0.5    4.6  6  DUF4131        Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.8  42.0  1.6e-121  9.5e-118       1     476 [.      20     462 ..      20     465 .. 0.97

  Alignments for each domain:
  == domain 1  score: 393.8 bits;  conditional E-value: 1.6e-121
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ +lggviGtglf+ +g+++s+ G +g+llayl++ +v++lvm +lge+++++p++g+f++ya+r+l+p+ G++++++y+++w ++l+  ltaa+
   EHT99431.1  20 HLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVWLVMACLGELSVAMPETGAFHVYAARYLSPATGYTVAWLYWLTWTVALGSSLTAAG 117
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg......iillaggkpnkgagfrflgdngsifknnlppgf 190
                   ++q+w  ++++p  w++ +vf +++ ++n+++ ++++e ef++++ik+i+i+afi++g      +i++ +g p++g  +++l+++g      lp+g 
   EHT99431.1 118 FCMQYW--FPHVP-VWIWCLVFCIAIYLLNVISTRFFAEGEFWFSIIKVITIVAFIVLGgaamfgFIPMKDGTPAPG--LSNLTAHGW-----LPNG- 204
                  ******..*****.*********************************************988877777777777777..999999999.....****. PP

  AA_permease 191 akeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvl 288
                         ++ +i+ +v+v+faf+G+el++i+agE+++P+k +P ai+ +v r+++f+v+ ++++ +l+p +  g+++      spfv+++++ g++ +
   EHT99431.1 205 -------VLPIIMTMVAVNFAFSGTELIGIAAGETENPQKVVPLAIRTTVARLILFFVGTVFVLAALIPMDQAGIVK------SPFVLVFEKIGIPWA 289
                  .......**********************************************************************......9************** PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliils 386
                  a++in+vilta+ls+ans+ly++ R+l+sla+++++P+ +++v+krgvPl ai++smi +llal+ + ++++  +vf  l+ais+++ ++vwl+i++s
   EHT99431.1 290 ADIINFVILTAILSAANSGLYASGRMLWSLANENTLPRAFARVNKRGVPLLAITVSMIGGLLALFSSVVAPD--TVFVALSAISGFAVVAVWLSICAS 385
                  ************************************************************************..************************ PP

  AA_permease 387 ylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpq 476
                  +++fR+    qg++ ++l ++a+l+p+++il+++++++ +  la+ ++++             +a+ ++++ +l ++ ++++  k++ ++
   EHT99431.1 386 HYVFRRRHVQQGKAPADLIYRAPLYPFTPILGFLLCLLACAGLAFDPSQR-------------IALWCGIPFVLFCYGAYHVTHKKSQAK 462
                  **************************************************.............999999999999999999988877665 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4  48.6   1.4e-48   8.2e-45       5     421 ..      20     448 ..      17     452 .. 0.82

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 1.4e-48
  AA_permease_2   5 safalvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasils 97 
                     +++l++g vig+g f+ +   + ++g+a ++l ++i++l++ + v++++ Els a+p  g   vy+++  ++  ++++aw++w+ + ++l s+l+
     EHT99431.1  20 HLVMLSLGGVIGTGLFFNTgyIISTTGAAgTLLAYLIGALVV-WLVMACLGELSVAMPETGAFHVYAARYLSPATGYTVAWLYWLTWTVALGSSLT 114
                    6789*************9999787888887778888888888.99*********99*********************************9988777 PP

  AA_permease_2  98 vaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitv.dg....ggfssl.......stetdt 181
                    +a+  +++ ++p++    w++ l   ++ i + l+n+++++  a   ++  i+k++ +++ +i+lg ++  ++    +                + 
     EHT99431.1 115 AAGFCMQY-WFPHVPV--WIWCL---VFCIAIYLLNVISTRFFAEGEFWFSIIKVI-TIVAFIVLGGAAMfGFipmkD----GtpapglsNLTAHG 199
                    77777777.6798743..33333...445666788888888888888899999995.555455444444413343333....13433444333444 PP

  AA_permease_2 182 ffpngwpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaii 275
                    ++png   +++++ +v ++f+G e +   + e  +++k vp+ai   ++  +++++++ +++++ +p+d+   +++   ++ l+fe+ g +++a i
     EHT99431.1 200 WLPNGVLPIIMTMVAVNFAFSGTELIGIAAGEteNPQKVVPLAIRTTVARLILFFVGTVFVLAALIPMDQAGIVKS---PFVLVFEKIGIPWAADI 292
                    777777778***********************666669*********************************99886...799************** PP

  AA_permease_2 276 vvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigali 371
                    ++++i  ++l a+n+ +++s r+l++la++++lPr fa+vnk+g p+ ai +++i  l+ l+ + +a+++ + +l+++s ++++ ++l + ++  +
     EHT99431.1 293 INFVILTAILSAANSGLYASGRMLWSLANENTLPRAFARVNKRGVPLLAITVSMIGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHYV 388
                    *********************************************************88777777888******************9999999999 PP

  AA_permease_2 372 lrkkrphlkr.....pgk....ilvaiigalfllfll.valffppkgpatqssliytiil 421
                     r++  ++++     +++    + + i+g+l++l+++  ++f p++++a + ++ + +++
     EHT99431.1 389 FRRRHVQQGKapadlIYRaplyPFTPILGFLLCLLACaGLAFDPSQRIALWCGIPFVLFC 448
                    999999998888888444444355667778888888724555567788888887776655 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   4.7      0.59   3.5e+03       9      41 ..      55     114 ..      20     126 .. 0.53
   2 ?   -1.3   7.4      0.24   1.5e+03       2      43 ..     102     140 ..      98     151 .. 0.68
   3 ?    1.4   4.9     0.036   2.1e+02       2      48 ..     126     176 ..     125     189 .. 0.73
   4 ?   -3.4   0.2       1.1   6.4e+03      32      43 ..     251     262 ..     239     274 .. 0.54
   5 ?    0.4   1.4     0.074   4.5e+02       6      50 ..     338     381 ..     334     397 .. 0.58
   6 ?   13.5   0.5   7.1e-06     0.043       7      55 ..     413     459 ..     407     467 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.59
     DUF4131   9 llalllllllllllllrr...........................rprrrvlllllllll 41 
                 l+++l++ l+ ++l  ++                            ++ ++ ++l+  l 
  EHT99431.1  55 LIGALVVWLVMACLGELSvampetgafhvyaarylspatgytvawLYWLTWTVALGSSLT 114
                 333333333333333333666666666644444444444444433444444444444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.24
     DUF4131   2 glplalvllalllllllllllllrrrprrrvlllllllllla 43 
                 +l++ + l  +l ++ ++  ++    p+  v++ +l++++++
  EHT99431.1 102 WLTWTVALGSSLTAAGFCMQYW---FPHVPVWIWCLVFCIAI 140
                 6777777777777777777777...47777777777766655 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.036
     DUF4131   2 glplalvllalllllllllllllrr....rprrrvllllllllllallgfa 48 
                 + p+++++l+++++++ll ++  r+      +  ++ +++++++++l+g+a
  EHT99431.1 126 HVPVWIWCLVFCIAIYLLNVISTRFfaegEFWFSIIKVITIVAFIVLGGAA 176
                 6899************99999887776654444445566666666666665 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.1
     DUF4131  32 vlllllllllla 43 
                 +l++++ +++la
  EHT99431.1 251 ILFFVGTVFVLA 262
                 222222222222 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.074
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfalr 50 
                 +l+++ + ++  ll+l+ +      +v+++l+++  +a++ ++l+
  EHT99431.1 338 PLLAITVSMIGGLLALFSSV-VAPDTVFVALSAISGFAVVAVWLS 381
                 45555555555555555554.445555555555555555555544 PP

  == domain 6  score: 13.5 bits;  conditional E-value: 7.1e-06
     DUF4131   7 lvllalllllllllllllrrrprrrvllllllllllallgfalrapqpn 55 
                   +l++ll+ll++++l +   p++r++l +++ ++l+++g+++ ++ ++
  EHT99431.1 413 TPILGFLLCLLACAGLAF--DPSQRIALWCGIPFVLFCYGAYHVTHKKS 459
                 345666666666666665..9******************9998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3485.36
//
Query:       EHT99432.1  [L=111]
Description: uncharacterized DUF2002 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-61  205.7   0.2    1.2e-61  205.6   0.2    1.0  1  DUF2002   Protein of unknown function (DUF2002)


Domain annotation for each model (and alignments):
>> DUF2002  Protein of unknown function (DUF2002)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   0.2   6.4e-66   1.2e-61       1     110 []       1     110 [.       1     110 [. 1.00

  Alignments for each domain:
  == domain 1  score: 205.6 bits;  conditional E-value: 6.4e-66
     DUF2002   1 mylrpdevarvlekaGferdvvtekayGyrkGenyvyvnrearlGrtalvihpalkeksskfaepaaelktsekyvqfplylageseeyyGiahGfssr 99 
                 mylrpdevarvlek+Gfe+d +t +ayGyr+G+nyvyvnrear+Grtalvihp+lkeks+ faepa+e+kt+++y+qfplylag+++e+yGi+hGfssr
  EHT99432.1   1 MYLRPDEVARVLEKVGFEVDEITPRAYGYRRGDNYVYVNREARMGRTALVIHPTLKEKSQPFAEPASEMKTCDHYTQFPLYLAGDTQEHYGIPHGFSSR 99 
                 9************************************************************************************************** PP

     DUF2002 100 ealerylqklf 110
                 +alerylq++f
  EHT99432.1 100 MALERYLQSVF 110
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 859.40
//
Query:       EHT99433.1  [L=105]
Description: hypothetical protein CKS_1465 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-23   83.1   0.4    1.8e-23   82.9   0.4    1.0  1  DUF883           Bacterial protein of unknown function (DUF88
     0.0018   17.9   0.0     0.0023   17.5   0.0    1.2  1  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
     0.0095   15.8   0.9       0.01   15.7   0.9    1.1  1  Apolipoprotein   Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.025   14.7   0.2      0.026   14.6   0.2    1.1  1  ApoLp-III        Apolipophorin-III precursor (apoLp-III)
      0.036   14.6   0.1      0.045   14.3   0.1    1.2  1  V-ATPase_G       Vacuolar (H+)-ATPase G subunit
       0.06   13.7   0.8      0.079   13.3   0.8    1.2  1  V-SNARE          Vesicle transport v-SNARE protein N-terminus
      0.069   13.8   0.1      0.084   13.5   0.1    1.2  1  CdiI_2           CdiI immunity protein
       0.18   12.1   0.8       0.35   11.1   0.4    1.6  2  THDPS_N_2        Tetrahydrodipicolinate N-succinyltransferase
       0.62   10.6  11.8        3.1    8.4   1.7    2.7  2  YtxH             YtxH-like protein
       0.75    9.6   5.2       0.95    9.3   4.6    1.5  1  DivIC            Septum formation initiator


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.4     1e-26   1.8e-23       2      94 .]      12     104 ..      11     105 .] 0.95

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1e-26
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                 ++++++++l ++le+llk+  +ea++e++++R+++e+ l+++r++l+   ++v + a++a  ++d yV+++Pw  vGi+a+vG++lG+Ll  R
  EHT99433.1  12 DINQDVNELADSLEALLKSYDSEAKDEVNSARSQAEALLKQTRAKLNGGGNRVTQVARDAGYQVDAYVHDKPWYGVGIGAAVGIVLGALLVSR 104
                 5789***********************************************************************************876533 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06    0.0023       2      36 ..      24      58 ..      23      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
  Nbl1_Borealin_N  2 kealLenfdlEveeRirrlraelelllktlrnrfe 36
                     +ealL+ +d E+++ ++  r+++e llk+ r++++
       EHT99433.1 24 LEALLKSYDSEAKDEVNSARSQAEALLKQTRAKLN 58
                     79***************************999987 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.9   5.8e-06      0.01      86     133 ..      13      60 ..       3      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.8e-06
                     HHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH CS
  Apolipoprotein  86 laadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaer 133
                     +++d++el ++l++  + + ++++++v + +++ ++++ ++r+kl   
      EHT99433.1  13 INQDVNELADSLEALLKSYDSEAKDEVNSARSQAEALLKQTRAKLNGG 60 
                     788999999999999999999999999999999999999999877544 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.5e-05     0.026      23      69 ..      13      59 ..       1      80 [. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
   ApoLp-III 23 vvetiKensenlvdqlkqvikslqeelkkksdeleealkevkkkiee 69
                +++ + e +++l   lk++ +++++e+  + +++e +lk++++k++ 
  EHT99433.1 13 INQDVNELADSLEALLKSYDSEAKDEVNSARSQAEALLKQTRAKLNG 59
                44444444444444455555555566666666777777777777654 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.5e-05     0.045      25      72 ..      22      68 ..      12      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH CS
  V-ATPase_G 25 krkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkie 72
                +  ++ lk   +eA++E+++ r++ e+ +k+ +a+  g+ + ++ ++ 
  EHT99433.1 22 DSLEALLKSYDSEAKDEVNSARSQAEALLKQTRAKLNGGGNRVT-QVA 68
                55567799999********************9999987765554.444 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   4.4e-05     0.079      28      71 ..      15      58 ..       3      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.4e-05
     V-SNARE 28 reiekkldeaeelldqMelEvrnlpsserasykaklreykselk 71
                +++ +  d++e ll++++ E+++   s+r++  a l++ +++l+
  EHT99433.1 15 QDVNELADSLEALLKSYDSEAKDEVNSARSQAEALLKQTRAKLN 58
                56788889**************8877**************9997 PP

>> CdiI_2  CdiI immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.7e-05     0.084      14      56 ..      14      55 ..      12      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-05
      CdiI_2 14 hQDydlegdsieeiledYvssespeevaelideieellassld 56
                +QD+   +ds+e+ l++Y s++ ++ev++++++ e+ll++   
  EHT99433.1 14 NQDVNELADSLEALLKSYDSEA-KDEVNSARSQAEALLKQTRA 55
                8*****************8876.9**************98764 PP

>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.76   1.4e+03      22      38 ..      10      26 ..       2      35 .. 0.57
   2 ?   11.1   0.4   0.00019      0.35      13      57 ..      34      79 ..      19      81 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.76
                -HHHHHHHHHHHHHHHT CS
   THDPS_N_2 22 gaearaaveevleaLda 38
                + ++ + v+e+ ++L+a
  EHT99433.1 10 DIDINQDVNELADSLEA 26
                33445555555555553 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00019
                GGG--SSS--HHHHHHHHHHHHHHHTTSS-SEEE.ETTEEEE-HHH CS
   THDPS_N_2 13 rdelepetagaearaaveevleaLdaGelRvAek.kdgeWevneWv 57
                 ++ e ++a ++a+a ++++ ++L+ G  Rv +  +d  ++v++ v
  EHT99433.1 34 EAKDEVNSARSQAEALLKQTRAKLNGGGNRVTQVaRDAGYQVDAYV 79
                23333356778999******************97444448888766 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.7    0.0017       3.1      29      72 ..      12      55 ..      10      82 .. 0.82
   2 ?    6.5   2.9    0.0069        12       2      18 ..      85     101 ..      84     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
        YtxH 29 dlkekaddlkekakelleeakekakekaedlkekvkekadelke 72
                d+++ +++l+++++ ll++  + ak++++ ++++++   ++ ++
  EHT99433.1 12 DINQDVNELADSLEALLKSYDSEAKDEVNSARSQAEALLKQTRA 55
                68888999999999999999777788777777777766666555 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0069
        YtxH   2 lglliGaavGaaaglLl 18 
                  g+ iGaavG ++g Ll
  EHT99433.1  85 YGVGIGAAVGIVLGALL 101
                 5999**********997 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.6   0.00053      0.95      19      66 ..      10      58 ..       2      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00053
                HHHHHHHHHHHHHHHHHHHHH.HHHHHHHHCC-XXXXXXXXXXXXXXXX CS
       DivIC 19 ykqlkqeiaalqaelaklkae.neeLeaevkdLksdedyieerARselg 66
                  +++q++++l + l++l +    e ++ev+  +s+ +++ ++ R +l+
  EHT99433.1 10 DIDINQDVNELADSLEALLKSyDSEAKDEVNSARSQAEALLKQTRAKLN 58
                5789************98766156789*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1279  (0.0713369); expected 358.6 (0.02)
Passed bias filter:                      882  (0.049194); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 788.94
//
Query:       EHT99434.1  [L=80]
Description: glutaredoxin-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-15   56.7   0.0    2.3e-15   56.5   0.0    1.1  1  Glutaredoxin   Glutaredoxin
    0.00047   20.5   0.0    0.00051   20.4   0.0    1.1  1  DUF836         Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
      0.028   14.8   0.0      0.032   14.7   0.0    1.1  1  GST_N_3        Glutathione S-transferase, N-terminal domain
       0.11   12.6   0.0       0.12   12.4   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   5.2e-19   2.3e-15       1      60 []       3      61 ..       3      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 5.2e-19
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60
                  ++++tk+ C++C+++k++L+++g++++ i++d  +++ + lk+l g+r+vP+v+  ++h+
    EHT99434.1  3 IIIYTKNHCVQCNATKNALDRHGIDYQLINLDTQPDAIDSLKAL-GYRQVPVVMTHDDHW 61
                  79******************************************.*********999986 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   0.00051       1      57 [.       2      58 ..       2      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CC....CHCCCCTTTTEEEECT CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIakdee....leakYgleipvlaleg 57
                ++++y+k++C  C   k++L     ++g++ + i+ +++++    l+a    ++pv+++ +
  EHT99434.1  2 RIIIYTKNHCVQCNATKNALD----RHGIDYQLINLDTQPDaidsLKALGYRQVPVVMTHD 58
                59*******************....688999999999877766767777777899999877 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     7e-06     0.032       2      53 ..       6      58 ..       5      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7e-06
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TT CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLe.dd 53
                y  ++++ ++  + aL+  g+++++ +++ +      l+  ++++vPv + +d
  EHT99434.1  6 YTKNHCVQCNATKNALDRHGIDYQLINLDTQPDAIDSLKALGYRQVPVVMtHD 58
                7889************************9999999999999*******97344 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-05      0.12       1      57 [.       1      58 [.       1      72 [. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
                   EEEEEESSS.STTCHHHHHHHHHHCHCCTCECEEECC.TTHHHH...HHCT-SSSSEEECTT CS
  Thioredoxin_3  1 meikvlgpg.CakCpklekavkeaaaekgikaevekv.tdfeei...ekygVmsvPalvidg 57
                   m+i + +++ C +C+    a+k a+++ gi++++++  t+++ i   +  g ++vP ++  +
     EHT99434.1  1 MRIIIYTKNhCVQCN----ATKNALDRHGIDYQLINLdTQPDAIdslKALGYRQVPVVMTHD 58
                   678886666699998....899999*******999997887777555667778888886554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 627.35
//
Query:       EHT99435.1  [L=134]
Description: NrdI family ribonucleotide reduction protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-47  159.8   0.0    3.2e-47  159.6   0.0    1.0  1  Flavodoxin_NdrI  NrdI Flavodoxin like
     0.0011   19.1   0.0     0.0013   18.9   0.0    1.1  1  DUF563           Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> Flavodoxin_NdrI  NrdI Flavodoxin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6   0.0   3.5e-51   3.2e-47       1     119 [.       5     122 ..       5     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.6 bits;  conditional E-value: 3.5e-51
                      EEE--TT-HHHHHHHHH-S-EEEE-SSTT--.---SS-EEEEEE--TTSSSSTSS-HHHHHHHTSHHHHHCEEEEEEEE-GGGGGGTTHHHHHH CS
  Flavodoxin_NdrI   1 vvysSlsgntkrFvekleleaqripleekeeelevdepyvlivptygegeekkavpkqvieflnkeknrkllrGviasGnrnfgeqyalaakki 94 
                      v++sS s+nt+rF+++l+l+a rip+e+k + l++++py+l+vp+yg+g++++avp+qvi+fln+e nr+ lrGvia+Gnrnfge y+la+++i
       EHT99435.1   5 VYFSSQSENTHRFITRLGLPAHRIPIESK-QPLHIHQPYILVVPSYGGGSHRGAVPRQVIQFLNDEANRRGLRGVIAAGNRNFGEGYCLAGDII 97 
                      89***********************9985.56************************************************************** PP

                      HHHHT--EEEEEETT--HHHHHHHH CS
  Flavodoxin_NdrI  95 akkfkvPllykfelrGtkeDvervr 119
                      akk++vP+ly+fel+Gt++D+++v+
       EHT99435.1  98 AKKCQVPYLYRFELMGTPDDIANVK 122
                      ***********************97 PP

>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.4e-07    0.0013      35     100 ..       9      74 ..       2     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-07
      DUF563  35 spqpfqrellkllgirpekrikveldepvhve.klivpvpprssggfqgallpklrdrlrerlnlek 100
                 s ++  ++++ +lg+ p+ ri +e+++p+h++   i++vp++++g+++ga+++++ ++l++ +n + 
  EHT99435.1   9 SQSENTHRFITRLGL-PAHRIPIESKQPLHIHqPYILVVPSYGGGSHRGAVPRQVIQFLNDEANRRG 74 
                 45567788999****.****************445667888899999****99**999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1174.12
//
Query:       EHT99436.1  [L=319]
Description: ferritin-like ribonucleoside-diphosphate reductase 2, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-86  288.2   0.1    7.7e-86  288.0   0.1    1.0  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.1   4.3e-90   7.7e-86       2     279 .]       9     280 ..       8     280 .. 0.96

  Alignments for each domain:
  == domain 1  score: 288.0 bits;  conditional E-value: 4.3e-90
                     T-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   2 fvlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHa 96 
                     +++++i++++++e++++l++nfW+pe+++ls+Dl  w+ +L + +++++ +v+++l+lldti+n  +++ l++++ +p+++a+++++ +mE++Ha
      EHT99436.1   9 INWNRIQDEKDLEVWNRLTSNFWLPEKIPLSNDLPAWQ-TLDKSQQQLTIRVFTGLTLLDTIQNVLGAPGLMPDALTPHEEAVLSNISFMEAVHA 102
                     8************************************9.5******************************************************* PP

                     HHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH CS
  Ribonuc_red_sm  97 esYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrDe 191
                     +sYs++++tl+ ++ + d ++++ een+alq+ka +i ++y+ ++ +   +++++a+++le++lfysgF +++++++rg+l+++a+ i+li+rDe
      EHT99436.1 103 RSYSSIFSTLC-NTSDVDAAYQWSEENQALQNKAGIILTHYRADD-P---LKKKIASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIRDE 192
                     ***********.99999************************9655.3...55******************************************* PP

                     HHHHHHHHHHHHHHHHCS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT..---C CS
  Ribonuc_red_sm 192 glHtdfagllfkelkeen.elenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYnve..eenP 279
                     ++H++++g+++++ +e+  e +++ l+++  +l+  ++e+E ++++ +++    g   ++vk++++y+a+++lmnlgye+l+++e  ++nP
      EHT99436.1 193 AVHGYYIGYKYQKALEQVdEGRREALQQFAIDLLLALYENEVAYTEALYGE--TGWA-DEVKTFLHYNANKALMNLGYEALFPAEltQVNP 280
                     **************9999*******************************77..5754.7*************************9988888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2321.14
//
Query:       EHT99437.1  [L=388]
Description: major facilitator superfamily (MFS) permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-34  118.6  53.2    2.4e-22   79.3  27.4    2.0  2  MFS_1     Major Facilitator Superfamily
    3.3e-11   42.7  16.9    3.3e-11   42.7  16.9    2.3  2  Sugar_tr  Sugar (and other) transporter
    2.6e-05   23.7  38.9    0.00012   21.5  38.9    1.9  1  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3  27.4     4e-26   2.4e-22       3     176 ..      18     187 ..      16     213 .. 0.89
   2 !   45.5  17.8   8.1e-16   4.9e-12       2     172 ..     217     385 ..     216     387 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 4e-26
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 +a+ l  ++ + + p+l  ++a ++++s++++g+++t   lg+a + l+l +l+d + rr +++++++l alg+++++++ss+++ll++ vl+Gl+ ++
  EHT99437.1  18 VATGLCVASNYYIQPLLH-TIALHFHLSVAFAGFIVTSAQLGYACGLLLLVPLGDMLERRGLIVAMMVLAALGMVIIALSSSFPVLLLGTVLTGLF-SV 114
                 566777888999999**9.9*************************************7777************88888756666************.8* PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 ++ + + l+a ++ +e rg+++g +++g  lG++l+  ++g la+++gW+ v++++ +++ll+++   l+   ++
  EHT99437.1 115 AAQILVPLAATLARPETRGKVTGTVMSGLLLGILLARTVAGGLAQLGGWQTVYWVASVLMLLMALA--LWRALPR 187
                 ***************************************************************995..4433333 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 8.1e-16
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslw.lllvlrvlqG 96 
                 +++++l+++++sil++++   + +  +g+s+ eigl l+l++++ a+a+  +G+l+d+ G  + +  +gll+++l+ +  + +++++  +l+++ +l  
  EHT99437.1 217 AFTGCLTFANFSILWTSMAFlLSSAPYGYSEGEIGL-LGLVGAAGALAARKAGALADK-GKAKlTTSMGLLIMLLS-WSVTaWGTQHLaALIIGILLLD 312
                 5899***************8666777*********8.66667788889999*******.77777************.555546777777********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 l+  ++  + +++i +  p+  r+r ++ +++++ +G +lg ll++  ++++gW++v  + a ++ll +++  ++ 
  EHT99437.1 313 LAVQGVHITNQSVIYARQPD-ARNRLNAGYMTSYFIGGALGSLLSANAYHLGGWHGVCAAGATLTLLNLLV--WWR 385
                 *******************9.***********************************************776..665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7  16.9   5.4e-15   3.3e-11      46     189 ..      46     182 ..       7     187 .. 0.92
   2 ?   -1.5   6.4      0.15   8.8e+02      65     188 ..     266     383 ..     249     385 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.4e-15
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                    g+iv ++++G ++G l++ +lgd++ R+  ++++ vl+  g v++a++    s+ vl++g vl+G++  +a++lvP+ ++ +A ++ Rg++++   
  EHT99437.1  46 AFAGFIVTSAQLGYACGLLLLVPLGDMLERRGLIVAMMVLAALGMVIIALSS---SFPVLLLGTVLTGLFSVAAQILVPL-AATLARPETRGKVTGTVM 140
                 55799***********************************************...************************8.678*************** PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 +++ +Gil+a ++  gl++ ++   w+   ++++v+ ll++++l+
  EHT99437.1 141 SGLLLGILLARTVAGGLAQLGG---WQTVYWVASVLMLLMALALW 182
                 **********************...************99998875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
                 HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH..HHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  65 fagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl..vPmyisEiApkklRgalvslyqlaitfGilvaaifglgl 161
                  ag l+d+   k +  ++ ++++ +  ++a+ +  +++ +li+g +l+ ++v ++ ++  + +y+     ++ R +l   y +++ +G  +++ + ++ 
  EHT99437.1 266 KAGALADKGKAKLTTSMGLLIMLLSWSVTAWGT--QHLAALIIGILLLDLAVQGVHITnqSVIYAR---QPDARNRLNAGYMTSYFIGGALGSLLSANA 359
                 456666777777777788888888888888888..7999999999999999977666611444443...6899********************999999 PP

                 HTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 162 nktsnadgwrillglqlvpallllill 188
                  + ++   w+  ++  + ++ll l+++
  EHT99437.1 360 YHLGG---WHGVCAAGATLTLLNLLVW 383
                 88888...************9988876 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  38.9     2e-08   0.00012      13     359 ..      31     380 ..      16     384 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2e-08
       MFS_4  13 tpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaa 111
                  p+L  +    +ls++ ag++ +   lGY  G ll +      + R  + a++++++l ++  al +sf ++ll  +l+G+ s ++ +++   +   a 
  EHT99437.1  31 QPLLHTIALHFHLSVAFAGFIVTSAQLGYACGLLLLVPLGDMLERRGLIVAMMVLAALGMVIIALSSSFPVLLLGTVLTGLFSVAAQILVPLAA-TLAR 128
                 577777788899********************998855555555555699*******************************9977777765433.3445 PP

       MFS_4 112 aarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaak...aeqkslpllalllaYglaGfG. 206
                 +  r++v + + +G  lGi+++ +++  l qlg  +++++++++vl +++ l+++  lpr  +  + +  +       + +  ++l++ +  g+  f+ 
  EHT99437.1 129 PETRGKVTGTVMSGLLLGILLARTVAGGLAQLGG-WQTVYWVASVLMLLMALALWRALPRITPSVSLNYPQLLVsifRLYAADAVLRTRAFTGCLTFAn 226
                 799******************9988776666665.555666789***************7766666554433221113444455566666667766663 PP

       MFS_4 207 YiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrv...akrsglrralaaallieavgvllslls.psplglivssvllGltflaitalvl 301
                 + i  t +  +  ++  g    +    l+Gl  ++g+l+ +++   a++ +++  + + lli  ++  ++  + + +++li++ +ll l+  ++     
  EHT99437.1 227 FSILWTSMAFLLSSAPYGYSEGEI--GLLGLVGAAGALAARKAgalADKGKAKLTTSMGLLIMLLSWSVTAWGtQHLAALIIGILLLDLAVQGVHITNQ 323
                 334444444444444444433333..4566666666666665511055555566667778887777666655415678999999999999888766666 PP

       MFS_4 302 qlarelappatrrl.lglmTasfgigQilGpllasllaeatgslalallvaaaalvlaa 359
                  ++    p+a++rl +g mT s+ ig +lG ll +  ++ +g+ + + +++a + +l +
  EHT99437.1 324 SVIYARQPDARNRLnAGYMT-SYFIGGALGSLLSANAYH-LGGWHGVCAAGATLTLLNL 380
                 66666678888555056666.677*******99877665.6777777777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2941.46
//
Query:       EHT99438.1  [L=176]
Description: DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-15   56.2   1.1    3.6e-15   55.6   0.3    1.7  2  MarR        MarR family
    4.4e-10   39.3   0.2    8.6e-10   38.4   0.2    1.5  1  MarR_2      MarR family
    3.7e-07   30.5   0.4    9.7e-07   29.2   0.1    1.8  2  HTH_27      Winged helix DNA-binding domain
    2.9e-05   23.5   0.6    9.7e-05   21.9   0.0    2.1  2  HTH_24      Winged helix-turn-helix DNA-binding
    0.00013   21.9   0.3    0.00028   20.8   0.3    1.6  1  HTH_Crp_2   Crp-like helix-turn-helix domain
     0.0002   21.5   0.0    0.00042   20.4   0.0    1.5  1  HTH_34      Winged helix DNA-binding domain
    0.00073   19.3   0.1     0.0013   18.5   0.1    1.4  1  HTH_IclR    IclR helix-turn-helix domain
     0.0031   17.4   0.0     0.0052   16.6   0.0    1.4  1  TrmB        Sugar-specific transcriptional regulator TrmB
     0.0089   16.4   0.2       0.02   15.3   0.0    1.7  2  Rrf2        Transcriptional regulator
  ------ inclusion threshold ------
      0.027   14.7   0.1      0.056   13.7   0.1    1.7  1  SgrR_N      Sugar transport-related sRNA regulator N-term
       0.08   12.7   0.0       0.18   11.6   0.0    1.6  1  FtsK_gamma  Ftsk gamma domain
       0.11   12.6   0.1       0.19   11.9   0.1    1.4  1  AbiEi_4     Transcriptional regulator, AbiEi antitoxin
       0.17   11.6   1.1       0.28   10.9   0.1    1.8  2  GntR        Bacterial regulatory proteins, gntR family
        0.2   11.7   0.6        0.3   11.1   0.0    1.6  2  PadR        Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.3   2.8e-18   3.6e-15       1      58 [.      53     112 ..      53     113 .. 0.97
   2 ?   -2.1   0.0         3   3.9e+03      34      34 ..     159     159 ..     134     168 .. 0.61

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 2.8e-18
                 --HHHHHHHHHHHHSTTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR   1 ltltqfviLrilyeqgplsvs..eLakklgvskstvtrvldrLekkGlieRskspeDrRe 58 
                 +++t f++L +l+ q+++s++  eL  +lg s++++tr++d+Lek+G+ieR+ s +DrR+
  EHT99438.1  53 INETLFMALLTLDAQEDQSIQpsELSTALGSSRTNATRIADELEKRGWIERRESAQDRRC 112
                 6899****************999************************************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
                 H CS
        MarR  34 v 34 
                 +
  EHT99438.1 159 L 159
                 1 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2   6.7e-13   8.6e-10       8      61 ..      58     111 ..      51     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 6.7e-13
                 HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2   8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61 
                 +++L+ L + +++ + ++el  +lg s+ +++ri ++L+++G++err++  D+R
  EHT99438.1  58 FMALLTLDAQEDQSIQPSELSTALGSSRTNATRIADELEKRGWIERRESAQDRR 111
                 789999*****9999**************************************9 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   7.6e-10   9.7e-07       7      68 .]      59     121 ..      55     121 .. 0.95
   2 ?   -1.8   0.0       3.5   4.5e+03      18      28 ..     147     158 ..     134     168 .. 0.54

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.6e-10
      HTH_27   7 lvLhlirhrrrrkkl.adlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 + L ++  +++++++ ++l+ +l  + +++  + ++L+++G++er ++++drr  ++ lTdkG
  EHT99438.1  59 MALLTLDAQEDQSIQpSELSTALGSSRTNATRIADELEKRGWIERRESAQDRRCLHLHLTDKG 121
                 568888899999**************************************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.5
      HTH_27  18 rkkl.adlcgrl 28 
                 +k++ + + ++l
  EHT99438.1 147 EKSQlESITRKL 158
                 444334444433 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.5e-08   9.7e-05      13      48 .]      67     102 ..      53     102 .. 0.89
   2 ?   -0.6   0.1      0.77   9.8e+02      34      44 ..     158     168 ..     155     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.5e-08
      HTH_24  13 qknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48 
                 q++ +i  +eL+ +lg S+++ +r  ++Le+ G+I+
  EHT99438.1  67 QEDQSIQPSELSTALGSSRTNATRIADELEKRGWIE 102
                 66*********************************7 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.77
      HTH_24  34 vnrrlkrLeee 44 
                 +++rl+++ee+
  EHT99438.1 158 LLTRLDKMEED 168
                 5789*****98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   2.2e-07   0.00028      21      54 ..      71     104 ..      56     119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.2e-07
                 EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2  21 pltqeelAsmlGltretvsrilseLkreglisrg 54 
                 ++   el+  lG++r   +ri  eL+++g+i+r+
  EHT99438.1  71 SIQPSELSTALGSSRTNATRIADELEKRGWIERR 104
                 566789**************************65 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.3e-07   0.00042      11      70 ..      67     126 ..      57     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.3e-07
      HTH_34  11 s.vdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafk 70 
                 + +++++++el++al+ +  n    ++ Lek g+ie++ + +++ ++ +l +T++G +  +
  EHT99438.1  67 QeDQSIQPSELSTALGSSRTNATRIADELEKRGWIERRESAQDR-RCLHLHLTDKGNAFLQ 126
                 2478899************************************9.9**********76555 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     1e-06    0.0013      13      51 ..      66     104 ..      59     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
                 CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  13 aeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51 
                 a+++q    sel+ ++g +++++ R+   L+++G++e+ 
  EHT99438.1  66 AQEDQSIQPSELSTALGSSRTNATRIADELEKRGWIERR 104
                 678888999***************************986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-06    0.0052       5      57 ..      52     106 ..      48     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-06
                 HHHHHCCCHCHHHH..HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB   5 GLseyEakvYlaLl..klgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57 
                 G++e+ + + l+L   + ++ + +e++ +lg +r+++ ++  +Le++G++er+++
  EHT99438.1  52 GINETLFMALLTLDaqEDQSIQPSELSTALGSSRTNATRIADELEKRGWIERRES 106
                 555555555555555555667889****************************987 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05      0.02      11      58 ..      58     104 ..      47     108 .. 0.91
   2 ?   -3.2   0.0       8.8   1.1e+04      40      51 ..     153     164 ..     147     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2  11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksv 58 
                 + all L ++e+++ ++ +e+++  + s++ + +i  +L+k g+++ +
  EHT99438.1  58 FMALLTLDAQEDQS-IQPSELSTALGSSRTNATRIADELEKRGWIERR 104
                 57899999999987.******************************865 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.8
                 HHHHHHHHHHHH CS
        Rrf2  40 sylekilakLrk 51 
                 s+ +k+l++L k
  EHT99438.1 153 SITRKLLTRLDK 164
                 456777777765 PP

>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.3e-05     0.056       5      50 ..      57     102 ..      54     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-05
      SgrR_N   5 qyerLlqhfegkevevtLqelAdvlfCsrRhartlLkkmqeegwle 50 
                  ++ Ll    +++++++ +el+ +l  sr +a+ +  +++++gw+e
  EHT99438.1  57 LFMALLTLDAQEDQSIQPSELSTALGSSRTNATRIADELEKRGWIE 102
                 58889999999**********************************8 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.18      35      61 ..      87     113 ..      70     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
  FtsK_gamma  35 RAarlidqLeeeGiVgpaegskpReVl 61 
                  A+r+ d+Le++G ++  e+++ R  l
  EHT99438.1  87 NATRIADELEKRGWIERRESAQDRRCL 113
                 59*******************999876 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00015      0.19      14      40 ..      72     103 ..      59     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
     AbiEi_4  14 fttrel.eaaGispsa....lrrLvrkGwLvr 40 
                 +  +el +a+G s+++     ++L ++Gw++r
  EHT99438.1  72 IQPSELsTALGSSRTNatriADELEKRGWIER 103
                 556677566*****777**************9 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00022      0.28       5      58 ..      53     105 ..      49     107 .. 0.87
   2 ?   -1.5   0.1       1.6     2e+03      12      33 ..     153     173 ..     151     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        GntR   5 vyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrq 58 
                 + e L + +l+   +  + +   +eL++++g srt   +  ++Le +g++err 
  EHT99438.1  53 INETLFMALLTLDAQEDQSI-QPSELSTALGSSRTNATRIADELEKRGWIERRE 105
                 66777778888888888888.999****************************85 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
                 HHHTTSS-TTSB---HHHHHHH CS
        GntR  12 dIlsgelrpGdkLPsereLaae 33 
                  I ++ l+  dk+ +e +L+a 
  EHT99438.1 153 SITRKLLTRLDKM-EEDKLSAS 173
                 5777778888888.88888876 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023       0.3      37      74 ..      91     126 ..      76     127 .. 0.85
   2 ?   -3.6   0.1       8.7   1.1e+04      36      45 ..     160     169 ..     157     170 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                 HHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  37 aLkrLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 + ++Lek g++e++++   ++++  + +lTd+G++ l+
  EHT99438.1  91 IADELEKRGWIERRESA--QDRRCLHLHLTDKGNAFLQ 126
                 5589**********886..578888899*****99987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.7
                 HHHHHHHHTT CS
        PadR  36 paLkrLekeg 45 
                 + L+++e+++
  EHT99438.1 160 TRLDKMEEDK 169
                 5688888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1316.79
//
Query:       EHT99439.1  [L=390]
Description: multidrug efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-16   57.7   9.9    3.7e-14   52.5   9.9    2.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.1e-14   54.1   0.0    1.9e-14   53.3   0.0    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS
    1.2e-11   45.2   4.8    7.2e-11   42.7   0.4    3.1  3  HlyD_3           HlyD family secretion protein
    9.2e-09   35.0   0.9    9.2e-09   35.0   0.9    3.8  4  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00029   20.6   0.0       0.87    9.5   0.0    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.013   14.2   3.4      0.056   12.2   3.4    2.0  1  HlyD_2           HlyD family secretion protein
      0.058   13.3   0.3       0.17   11.8   0.2    1.9  2  ydhR             Putative mono-oxygenase ydhR
       0.12   12.5   0.1        0.2   11.7   0.1    1.2  1  ECF_trnsprt      ECF transporter, substrate-specific componen
       0.17   12.0   3.7       0.34   11.0   3.7    1.5  1  DUF848           Gammaherpesvirus protein of unknown function
       0.17   12.0   1.3         23    5.1   0.0    2.4  2  TssO             Type VI secretion system, TssO
        0.4   10.7   4.9       0.15   12.0   1.1    2.2  2  Prefoldin_2      Prefoldin subunit
        2.8    7.7   7.4          5    6.9   7.4    1.3  1  DUF4750          Domain of unknown function (DUF4750)
        3.6    7.3  22.0       0.89    9.3  15.8    2.1  2  OEP              Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   9.9   2.7e-17   3.7e-14      19     181 ..      61     289 ..      55     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 2.7e-17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................................................. CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk................................................. 68 
                 ++++ a+v+G v+k+  +   d VkkG+ L++l+ ++    q+++ +a++                                                 
  EHT99439.1  61 QVQIMAQVSGSVNKVWFD-DTDYVKKGDVLVSLDKTDA---QQAFEKAQTelatsvrqvhqqminakqyqatialrqtaldqaqadlkrreplgasnli 155
                 67999*************.99***********998764...4444444444445555898888888888888888777777766666666666666655 PP

                 .......XXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 .......akkklkkke....................lleaarerLrllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftia 140
                        a       +                    ++   +  L++    +++ a+l+    + +++++++p++G+V +++v+ G+ ++++++l+ + 
  EHT99439.1 156 greelqhA-------RdavasakaeldvaiqqynanQAMILNTSLENQPAVKQSAAQLRDAWLALQRTDIRSPMDGYVSRRSVQVGSQISTSTPLMAVV 247
                 55554441.......0555566677888888555444444556677776777788999999999*********************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS
    HlyD_D23 141 dlstVWveaevyeqqlalvkvgqkvevtvealpgk.tfeGkv 181
                    +VWv+a+  e+qla v++gq+++v  + + ++  ++Gkv
  EHT99439.1 248 PATDVWVDANFKETQLAGVRIGQPATVVADIYGDDvVYHGKV 289
                 *****************************9998873456776 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.4e-17   1.9e-14       2      79 ..      36     346 ..      35     347 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.4e-17
                 SEEEEEEEEEE........................................................................................ CS
                 xxxxxxxxxxx........................................................................................ RF
        HlyD   2 lavfvawaala........................................................................................ 12 
                 +a +v+w+++                                                                                         
  EHT99439.1  36 IAWGVYWFLVLrhfqetddayvagnqvqimaqvsgsvnkvwfddtdyvkkgdvlvsldktdaqqafekaqtelatsvrqvhqqminakqyqatialrqt 134
                 667888888888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  EHT99439.1 135 aldqaqadlkrreplgasnligreelqhardavasakaeldvaiqqynanqamilntslenqpavkqsaaqlrdawlalqrtdirspmdgyvsrrsvqv 233
                 99999999999999999999999999999999999999999999999999999999999999999999999999999999******************* PP

                 ..........................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEEEEEEEEET CS
                 ..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxx RF
        HlyD  13 ..........................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvrvvvekaqg 63 
                                           et+l +vr+gqp++v+ d +++++   ++g+Vvg +++                      r+pvr+++ ++  
  EHT99439.1 234 gsqiststplmavvpatdvwvdanfkETQLAGVRIGQPATVVADIYGDDV--VYHGKVVGLDMGtgsafsllpaqnatgnwikvvqRLPVRIELNQDEV 330
                 **************************************************..*********************************************** PP

                 TEEEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxxxx RF
        HlyD  64 pyyplriglkagalvr 79 
                  ++plrigl+  ++++
  EHT99439.1 331 AKHPLRIGLSTLVKID 346
                 **********988886 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.16   2.1e+02       2      37 ..      64      99 ..      63     140 .. 0.75
   2 !   42.7   0.4   5.2e-14   7.2e-11       2      80 ..     218     296 ..     217     338 .. 0.79
   3 ?    0.4   0.0      0.76     1e+03      35      67 ..     318     352 ..     313     369 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
      HlyD_3  2 lrApvdGvvvelnveegevvqagdelleiippdtll 37
                + A v+G v+++     ++v +gd+l+++  +d  +
  EHT99439.1 64 IMAQVSGSVNKVWFDDTDYVKKGDVLVSLDKTDAQQ 99
                77999******99999**********9998766544 PP

  == domain 2  score: 42.7 bits;  conditional E-value: 5.2e-14
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkld.qgsdytlkgkierisptv 80 
                 +r+p dG v+  +v++g+ ++  ++l+ ++p  +++v+a   +++l+ ++ +gq++t+ +d  g d ++ gk++ ++  +
  EHT99439.1 218 IRSPMDGYVSRRSVQVGSQISTSTPLMAVVPATDVWVDANFKETQLAGVR-IGQPATVVADiYGDDVVYHGKVVGLDMGT 296
                 9************************************************7.**********888888******9887643 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.76
      HlyD_3  35 tllveakvpaadlgsik..kkgqkvtlkld.qgsdy 67 
                 +l v+++++++++++ +   +g ++ +k+d +++d 
  EHT99439.1 318 RLPVRIELNQDEVAK-HplRIGLSTLVKIDtDNKDG 352
                 677899999999998.67889999999999767665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.9   6.7e-12   9.2e-09       2      49 ..      61     108 ..      60     109 .. 0.93
   2 ?    1.5   0.4       0.2   2.7e+02      39      50 .]     133     144 ..     128     144 .. 0.84
   3 ?   -3.0   0.2       4.8   6.7e+03      37      44 ..     173     180 ..     163     184 .. 0.55
   4 ?    0.7   0.0      0.35   4.8e+02       4      24 ..     217     237 ..     214     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 6.7e-12
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                      +v+I a+vsG V ++   d ++Vk+GdvL+ lD+++ q a  +a+  l
       EHT99439.1  61 QVQIMAQVSGSVNKVWFDDTDYVKKGDVLVSLDKTDAQQAFEKAQTEL 108
                      79************************************9998888765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
  Biotin_lipoyl_2  39 qlalaqaeaqla 50 
                      q+al+qa+a+l+
       EHT99439.1 133 QTALDQAQADLK 144
                      49*******996 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.8
  Biotin_lipoyl_2  37 alqlalaq 44 
                      +l++a++q
       EHT99439.1 173 ELDVAIQQ 180
                      44555555 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.35
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrV 24 
                       I +p +G V++  V+ G ++
       EHT99439.1 217 DIRSPMDGYVSRRSVQVGSQI 237
                      699*********999999876 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00063      0.87      42      73 .]      61      92 ..      60      92 .. 0.92
   2 !    8.7   0.0    0.0011       1.5      44      72 ..     217     245 ..     215     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00063
                   EEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 42 emeieapkaGvvkeilvkeGdtvevgdllaki 73
                   +++i a+++G v ++  ++ d v+ gd+l+ +
     EHT99439.1 61 QVQIMAQVSGSVNKVWFDDTDYVKKGDVLVSL 92
                   67999************************975 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllak 72 
                    +i +p++G+v+   v++G++++++++l+ 
     EHT99439.1 217 DIRSPMDGYVSRRSVQVGSQISTSTPLMA 245
                    799***********************985 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.4   4.1e-05     0.056      54     156 ..      51     155 ..      13     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
      HlyD_2  54 ikkkgliirdekviksnaegivkyf.vkeGdkvkkgkkvaeiqkseadeklkekletlnerikeienneaieni.ekdiekldreInvlekdikesikn 150
                  + ++++  +  +i ++  g+v++  +++ d vkkg+ ++   k+ a++  ++  ++l+  + ++++++++++  + +i   +  +++ ++d+k +   
  EHT99439.1  51 ETDDAYVAGNQVQIMAQVSGSVNKVwFDDTDYVKKGDVLVSLDKTDAQQAFEKAQTELATSVRQVHQQMINAKQyQATIALRQTALDQAQADLKRREPL 149
                 567999999*************98637999***************************************999997888888889999999999988766 PP

      HlyD_2 151 edikki 156
                 ++++ i
  EHT99439.1 150 GASNLI 155
                 666665 PP

>> ydhR  Putative mono-oxygenase ydhR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00013      0.17      25      88 ..      63     130 ..      47     140 .. 0.75
   2 ?   -2.6   0.0       3.8   5.2e+03      12      39 ..     359     386 ..     355     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                 HHHTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHHHHG....GGTSS--EEEEEEE-HH CS
        ydhR  25 esiaeepGliwKiWteneetkeaGGiYlFedeasaeaYlemhtarlk....sfgveevrvkvFevnek 88 
                 + +a++ G + K+W  +++  + G + +  d+++a++ +e+ +  l+    ++  + +++k++++  +
  EHT99439.1  63 QIMAQVSGSVNKVWFDDTDYVKKGDVLVSLDKTDAQQAFEKAQTELAtsvrQVHQQMINAKQYQATIA 130
                 66899**********************************97766554111144556677777766544 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.8
                 -HHHHHHHHHHHHHHHTTSTTEEEEEEE CS
        ydhR  12 fgeelaealkelaesiaeepGliwKiWt 39 
                 + +++a +++ la ++a ++ li  i  
  EHT99439.1 359 VRQQAAYSTNALAIDLAPVNTLITDIVH 386
                 5567777888999999999999887755 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00015       0.2      95     158 ..      14      75 ..      10      76 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                  CHTTHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHS.............--HHHHHHHHHCCTT CS
  ECF_trnsprt  95 kkknlkeivvsfilagvlgtivatllvlliilplylklktakaiaiagkallaailgpiivkgl 158
                  ++k++k+ + ++il+++++ +++    ++++l+l  +++  ++ ++ag+++ +++++  +v+ +
   EHT99439.1  14 NNKKKKR-KGALILLALVVVLLGIAWGVYWFLVLR-HFQETDDAYVAGNQVQIMAQVSGSVNKV 75 
                  4555555.344444444444444444444555555.57999*************9999998876 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.7   0.00025      0.34      28     118 ..      95     188 ..      81     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
      DUF848  28 FGgssalFekQfddarkalrsleqlkrtkeikalveavdteieakk...kelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeey 118
                    ++a  + Q + a  + + ++q+ + k+ +a++ + +t +++ +   k ++ L + n    +++++ +d+v+ +k+e+++++++ +++q   
  EHT99439.1  95 TDAQQAFEKAQTELATSVRQVHQQMINAKQYQATIALRQTALDQAQadlKRREPLGASNLIGREELQHARDAVASAKAELDVAIQQYNANQAMI 188
                 5556666666777777777788889999999999999888887666111556667777777778888889*******************99765 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.017        23       2      43 ..      15      55 ..      14      75 .. 0.86
   2 ?    5.0   0.8     0.018        24      44      79 ..      92     127 ..      75     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
        TssO  2 nkkErrsgflyflllFlvtvlllflivffffkssplqekeil 43
                nkk +r g l +l+l +v++++   +v++f    ++qe+++ 
  EHT99439.1 15 NKKKKRKGALILLALVVVLLGIAW-GVYWFLVLRHFQETDDA 55
                899999999999999999999888.9****999999999876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.018
        TssO  44 lkelerkkkfeekqkelkkkvdsiykkIdsLkpevn 79 
                 l++ +++++fe+ q el++ v ++++++ + k+ + 
  EHT99439.1  92 LDKTDAQQAFEKAQTELATSVRQVHQQMINAKQYQA 127
                 789999**********************88766555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   0.00011      0.15      39      85 ..      73     119 ..      54     142 .. 0.81
   2 ?   -1.1   0.1       1.3   1.8e+03      59      87 ..     159     187 ..     153     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                  HHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  39 elldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekql 85 
                  +++  d++ y + Gdvlv+ dk+++++  e+ + +l + ++++ +q+
   EHT99439.1  73 NKVWFDDTDYVKKGDVLVSLDKTDAQQAFEKAQTELATSVRQVHQQM 119
                  5555566668888*****************************99997 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  59 dkeevkeeLeerketlekeiktlekqlek 87 
                  +++ +++ +   k++l+  i++++ ++  
   EHT99439.1 159 ELQHARDAVASAKAELDVAIQQYNANQAM 187
                  55667777778888888888888766654 PP

>> DUF4750  Domain of unknown function (DUF4750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.4    0.0036         5      16      38 ..      27      49 ..      23      50 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0036
     DUF4750 16 lliVlllillgWylaWklvLshv 38
                l++V++l+ + W + W lvL h+
  EHT99439.1 27 LALVVVLLGIAWGVYWFLVLRHF 49
                45666677888***********9 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  15.8   0.00064      0.89      91     183 ..      96     188 ..      51     192 .. 0.71
   2 ?    2.5   0.3     0.082   1.1e+02       5      30 ..     189     214 ..     187     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00064
         OEP  91 qleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlisll..d.vlqaqvrllqaraelaeaeqqlqlaraqL 183
                 +   a++ +e+a+ +l++ v+q  +q+ +ak+  ++    ++++++a +  ++r  +G+++l+  + ++ a+  +++a+ael  a+qq+++++a +
  EHT99439.1  96 D---AQQAFEKAQTELATSVRQVHQQMINAKQYQATIALRQTALDQAQADLKRREPLGASNLIgrEeLQHARDAVASAKAELDVAIQQYNANQAMI 188
                 4...455555555555555555555555555555555555555555555555555555555555555**************************987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.082
         OEP   5 lalalennpdlkaaeaeieaaeanlk 30 
                 l++ len p++k++ a+++ a+ +l+
  EHT99439.1 189 LNTSLENQPAVKQSAAQLRDAWLALQ 214
                 67899**************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1614  (0.0900218); expected 358.6 (0.02)
Passed bias filter:                      786  (0.0438396); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 2546.47
//
Query:       EHT99440.1  [L=511]
Description: multidrug resistance protein B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-52  179.2  37.1    1.1e-52  179.2  37.1    2.1  2  MFS_1     Major Facilitator Superfamily
    6.5e-08   31.9  14.2    6.5e-08   31.9  14.2    2.9  2  Sugar_tr  Sugar (and other) transporter
    2.4e-07   29.4  20.5      0.012   13.9   1.2    4.1  4  OATP      Organic Anion Transporter Polypeptide (OATP) family
     0.0062   15.1   5.2     0.0062   15.1   5.2    3.5  4  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2  37.1   2.4e-56   1.1e-52       1     352 [.      18     412 ..      18     413 .. 0.90
   2 !    3.7   0.6    0.0055        25     150     177 ..     476     501 ..     459     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 2.4e-56
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+la+++  l+++i+++a+p ++a +lg+s s+  +++t ++++ a++++++G+l+ r+G  +++ ++ +lfal+++++ + s +  +l+++rv+qG+ 
  EHT99440.1  18 LSLATIMQVLDSTIANVAIP-TIAGNLGASNSQGTWVITSFGVANAISIPITGWLAKRIGEVKLFTWSTILFALASWACGM-SESLeMLIFFRVIQGIV 114
                 5799****************.******************************************************999999.67777************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                  g l+p++++l+   +p+ +r+ a++l+++++ +++i+gp+lgg++++++ W ++f+i+ ++++++++l     +++ + r+++++++           
  EHT99440.1 115 VGPLIPLSQSLLLNNYPPAKRSIALSLWAMTVIVAPICGPILGGWISDNYHWGWIFFINVPIGVVVIML----TLQTLRGRETQTQIRPIdtvglvlli 209
                 ******************************************************************774....22222222222222222334678*** PP

       MFS_1 189 .........................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsgllla 246
                                                          + t ++p+v+ +++++++++     +++ l+ + ++g  +llp +lqev+g++ +  a
  EHT99440.1 210 vgvgslqvmldrgkeldwfssteiivltivavvalvmlliwELTDEHPIVD-LSLFKSRNFTI-GCLSISLAYMLYFGSIVLLPQLLQEVYGYT-ATWA 305
                 ***************************************************.99999888553.44444444568888****************.89** PP

       MFS_1 247 glllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt....ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglf 341
                 gl++a ++++ +il++++gr+s++     ++ l  +++++ a+++++ a t     + +++ ++ ++ Gf+++++f +l++++ + +ppe++++as+l 
  EHT99440.1 306 GLASAPVGIIPVILSPIIGRFSHK---IDMRQLVTFSFIMYAICFYWRAYTfepeMDFAASTWPQFIQGFAVACFFMPLTTITLSGLPPERMAAASSLS 401
                 ************************...668888889999999999999999877777777777************************************ PP

       MFS_1 342 ntagslggalg 352
                 n++++l+g++g
  EHT99440.1 402 NFVRTLAGSIG 412
                 *********99 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0055
       MFS_1 150 Wravfyilaivsllafvlfllllpeepp 177
                    +f++ a+v+l+++vl  +++ ++p 
  EHT99440.1 476 ANEIFWASAGVFLVLLVL--IWFARPPF 501
                 5568***********777..99988886 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9  14.2   1.4e-11   6.5e-08      39     188 ..      41     184 ..      20     188 .. 0.87
   2 !    4.6   6.8    0.0026        12     255     404 ..     269     414 ..     237     428 .. 0.66

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.4e-11
                 HHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHH CS
    Sugar_tr  39 sskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRg 137
                 ++  +s+++ +++  +f v  +i+  ++g+l++r+G  k +  +++lf  ++  +++++   s+e+li+ Rv+ Gi vG    l+  ++  + p+++R+
  EHT99440.1  41 GNLGASNSQGTWVITSFGVANAISIPITGWLAKRIGEVKLFTWSTILFALASWACGMSE---SLEMLIFFRVIQGIVVGPLIPLSQSLLLNNYPPAKRS 136
                 4455689999*************************************************...***********************99999999****** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 138 alvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 +  sl+ + +++  + + i+g  ++++     w + +++++ + +++++l 
  EHT99440.1 137 IALSLWAMTVIVAPICGPILGGWISDNYH---WGWIFFINVPIGVVVIMLT 184
                 ****9999988888888888888877777...8888888888888887765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...... CS
    Sugar_tr 255 lligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks...kaa 348
                 ++ig++  ++  + +  +i  ++  + e  g++ +   l+++ vg++ ++ + +   ++ ++ +R+l+ ++++++aicf   +  ++  +      ++ 
  EHT99440.1 269 FTIGCLSISLAYMLYFGSIVLLPQLLQEVYGYTATwaGLASAPVGIIPVILSPIIGRFSHKIDMRQLVTFSFIMYAICFYWRA-YTFEPEMDFaasTWP 366
                 66666666666666666777777777777788888888999***********9999***********************9998.222222221222233 PP

                 CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 349 sivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisl 404
                 +++  ++    +a+f     p+  +++s l p+++ ++a++++ +v  la  + + 
  EHT99440.1 367 QFIQGFA----VACFF---MPLTTITLSGLPPERM-AAASSLSNFVRTLAGSIGTS 414
                 3333332....23332...2444444555555554.33445555555555444444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2   2.7e-06     0.012       3      83 ..      15      95 ..      13     102 .. 0.95
   2 !   13.0   0.1   5.1e-06     0.023     134     195 ..     103     164 ..      91     168 .. 0.80
   3 !   12.2   3.1   8.9e-06      0.04     288     377 ..     261     347 ..     233     355 .. 0.87
   4 ?    1.3   0.1     0.018        83     468     523 ..     368     423 ..     358     431 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-06
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslll 83
                 ++lsl++++q++ s++ +++i ti  + + ++s+  ++ +s+ ++n++ i + +++++r    ++  ++++l+al+s  +
  EHT99440.1 15 TIALSLATIMQVLDSTIANVAIPTIAGNLGASNSQGTWVITSFGVANAISIPITGWLAKRIGEVKLFTWSTILFALASWAC 95
                57899***********************************************************************99876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllkly 195
                 ++++  +++Gi   p+++l +s + +n  + + ++ l+++ ++ i+ p++G +lG+ +   y
  EHT99440.1 103 MLIFFRVIQGIVVGPLIPLSQSLLLNNYPPAKRSIALSLWAMTVIVAPICGPILGGWISDNY 164
                 56666788899999999999999999999999999999999999999999999998877665 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 8.9e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsl 377
                 ++l+k++ f++ +ls  + ++l+ G i+ lp+ l++ ++ +a+ A l  ++v i+ ++l  ++g +     k+++++l+++++++  +++
  EHT99440.1 261 LSLFKSRNFTIGCLSISLAYMLYFGSIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRF---SHKIDMRQLVTFSFIMYAICF 347
                 68999****************************************999999999999999998866...456788888888888877765 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.018
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 468 flvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifGaiiDs 523
                 f+  f +a+  +p ++++l   ++e  + a +l+ ++  l g i   i   +  D+
  EHT99440.1 368 FIQGFAVACFFMPLTTITLSGLPPERMAAASSLSNFVRTLAGSIGTSITTTMWTDR 423
                 67778999999********************************9999988887776 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   5.2   1.4e-06    0.0062     255     338 ..      43     125 ..      10     128 .. 0.85
   2 ?   -2.0   0.5      0.22   9.7e+02      51      85 ..     154     183 ..     137     196 .. 0.55
   3 !   11.3   6.2     2e-05      0.09     220     333 ..     263     379 ..     261     431 .. 0.63
   4 ?   -3.8   0.1      0.78   3.5e+03     168     184 ..     477     493 ..     448     498 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-06
       MFS_2 255 lg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsm 338
                 lg ++s+ +++ + + ++++++ip+  +lakr+g  +++ ++++l ++ +  + +   ++l +++++ vi g+ vg +  l  s+
  EHT99440.1  43 LGaSNSQGTWVITSFGVANAISIPITGWLAKRIGEVKLFTWSTILFALASWACGMS--ESLEMLIFFRVIQGIVVGPLIPLSQSL 125
                 67789999**********************************98877766666665..788888888888888888877777666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.22
       MFS_2  51 piv.GtlidktstrwGrrrPwlllsaiilavsiill 85 
                 pi+ G+++d+ ++       w+++  ++++v +i+l
  EHT99440.1 154 PILgGWISDNYHW------GWIFFINVPIGVVVIML 183
                 3331344444444......46666666666655555 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 2e-05
       MFS_2 220 vfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgallt.ivllvlvlll.qpsnll 315
                 +f++r f i  l+++la++ ++    ll   l+ v g ++++a + ++ v i  ++ +p++ ++  +++ ++++ ++++++ i ++  ++ + ++ + +
  EHT99440.1 263 LFKSRNFTIGCLSISLAYMLYFGSIVLLPQLLQEVYGyTATWAGLASAPVGIIPVILSPIIGRFSHKIDMRQLVTFSFIMYaICFYWRAYTFePEMDFA 361
                 566677777777777777777777777777777777777777777777666666666777777777777776666666654134444455555444445 PP

       MFS_2 316 lflvllviagfgvgvaal 333
                 + +  ++i gf+v+ +++
  EHT99440.1 362 ASTWPQFIQGFAVACFFM 379
                 555555555555433332 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 0.78
       MFS_2 168 rkgylifaliialLmll 184
                 ++++++ a ++ +L +l
  EHT99440.1 477 NEIFWASAGVFLVLLVL 493
                 33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3754.42
//
Query:       EHT99441.1  [L=349]
Description: alcohol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-27   95.2   2.3      2e-27   95.2   2.3    1.9  3  ADH_N            Alcohol dehydrogenase GroES-like domain
    8.4e-21   74.3   0.0    1.6e-20   73.4   0.0    1.5  1  ADH_zinc_N       Zinc-binding dehydrogenase
    3.1e-07   29.9   0.1    5.1e-07   29.2   0.1    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    3.4e-05   24.0   0.0      6e-05   23.3   0.0    1.4  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    7.4e-05   22.2   0.0    0.00013   21.4   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00056   21.0   0.0     0.0011   20.1   0.0    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    0.00096   19.1   0.0      0.005   16.7   0.0    1.9  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0016   18.0   0.0     0.0024   17.4   0.0    1.2  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
     0.0054   17.4   1.6       0.01   16.4   0.7    1.9  1  IGFBP            Insulin-like growth factor binding protein
  ------ inclusion threshold ------
      0.041   13.9   0.0      0.089   12.9   0.0    1.5  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.052   13.8   0.0       0.11   12.7   0.0    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.068   13.4   0.0       0.12   12.6   0.0    1.4  1  TrkA_N           TrkA-N domain
      0.083   12.5   0.0       0.13   11.9   0.0    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.083   13.5   0.0       0.19   12.3   0.0    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   2.3   1.6e-30     2e-27       2     108 ..      28     143 ..      27     144 .. 0.90
   2 ?   -2.5   0.1       3.6   4.6e+03      53      61 ..     172     180 ..     166     193 .. 0.81
   3 ?   -3.5   0.0       7.3   9.4e+03      54      57 ..     216     219 ..     183     237 .. 0.50

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 1.6e-30
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.........TTBEETTTS CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlC.........eeakllgvs 90 
                  +v+i++ ++g+C+sDlh++++ ++   ++pl++GHEivG v e+g + ++++ Gd V v +++  c +C+ C+++ee++C          + k++g +
  EHT99441.1  28 SDVRIEILYCGVCHSDLHMARN-EWAVSHYPLVPGHEIVGRVIETGGKASRFAPGDLVGVGVMVDaCRTCRFCQQQEEQYCeagftatynGTDKYTGER 125
                 68*******************9.899**********************************999999***************777666655555555555 PP

                 S-SSSBSEEEECGGGEEE CS
       ADH_N  91 ldGgfaeyvvvpekklvk 108
                 ++Gg+ae+vvv+++++v+
  EHT99441.1 126 TRGGYAEHVVVDQDFVVS 143
                 *************99987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.6
                 --TT-EEEE CS
       ADH_N  53 lkvGdrVvv 61 
                 +kvGd+V v
  EHT99441.1 172 VKVGDKVGV 180
                 899999987 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.3
                 -TT- CS
       ADH_N  54 kvGd 57 
                 + G+
  EHT99441.1 216 RLGS 219
                 3333 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   1.3e-23   1.6e-20       1     127 [.     185     306 ..     185     309 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.3e-23
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 g+G++av+lA alGa v+    s++k+e a++lG  +v+ +   +  +++++    + +d++++cv++++ l+ +l+ lk +Grlv+vG++  +    d
  EHT99441.1 185 GLGHMAVKLASALGADVTLFTTSPDKAEDARRLGSRHVVVS---RHAAEMQACQ--QSLDLIVDCVAAPHDLDPYLATLKTNGRLVLVGIPDSPHAsPD 278
                 89********************************9999999...4566666655..79********************************555555599 PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdl 127
                 + +++++++si Gs  gs  +e +++ld+
  EHT99441.1 279 ITPMVFRRLSISGSSIGS-IKETQDMLDF 306
                 ******************.8999999987 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   3.9e-10   5.1e-07      30     111 ..     177     257 ..     171     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.9e-10
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC- CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvt 111
                  kv viG G  G  A++ a++lga+Vt++ ++p+++e  + lg++   v+++++++++   ++ d+++ +v+ p    P L t
   EHT99441.1 177 KVGVIGLGGLGHMAVKLASALGADVTLFTTSPDKAEDARRLGSR-HVVVSRHAAEMQACQQSLDLIVDCVAAPHDLDPYLAT 257
                  899*****************************************.556677788888888999****999999888887765 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.7e-08     6e-05       1      76 [.     177     258 ..     177     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.7e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg......akaaesieelvasldvvitmvkagkavdeviegl 76 
                    k+g+iGlG +G+  ++   + g +v+++  +++k+e++   g       + a++++++ +sld+++ +v a ++ d  +  l
     EHT99441.1 177 KVGVIGLGGLGHMAVKLASALGADVTLFTTSPDKAEDARRLGsrhvvvSRHAAEMQACQQSLDLIVDCVAAPHDLDPYLATL 258
                    69*********8777777788*****************999989887666777777777788*********99998877665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   9.8e-08   0.00013      36      83 ..     175     222 ..     163     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.8e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv 83 
                   g +vG+iGlG +G+ + k+++a+g++v+ + +s++k e++++lg ++v
    EHT99441.1 175 GDKVGVIGLGGLGHMAVKLASALGADVTLFTTSPDKAEDARRLGSRHV 222
                   789********************************9998888887665 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.3e-07    0.0011       1     126 [.     217     335 ..     217     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.3e-07
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----....S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpp...lsaallkpakkrkgrsvkyeflfsmkasaqadileel 93 
                   lG  +v+ +r + ++  ++++++ D+++d+v+ ++ l+  l+ l+ +Grlv +g p    +s ++ +  ++r   s++ + + s      ++  +++
    EHT99441.1 217 LGSRHVVVSRhAAEM--QACQQSLDLIVDCVAAPHDLDPYLATLKTNGRLVLVGIPDsphASPDITPMVFRR--LSISGSSIGS-----IKE-TQDM 303
                   788999988868888..567899*********888889999999999***9999544345444444444422..4444444442.....566.7889 PP

                   HHHHHHHH----EEEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  94 aalieeGklrpvvdrvfpleeaaeAhrylesgr 126
                   ++++ e++++  ++     e++ eA++++ +g 
    EHT99441.1 304 LDFCGENNITADIE-LIRGEQTEEAFARMLKGE 335
                   99999999988887.788899999999887776 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06     0.005       1      45 [.     177     221 ..     177     255 .. 0.76
   2 ?   -0.4   0.0       0.7   8.9e+02     147     160 ..     316     329 ..     304     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekieks 45 
                 kv+viG G +G+   +++ + g +V+l+ +s++++e+a++  ++ 
  EHT99441.1 177 KVGVIGLGGLGHMAVKLASALGADVTLFTTSPDKAEDARRLGSRH 221
                 79**********999999999****************99877663 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.7
                 EEEEE-TT--HHHH CS
     3HCDH_N 147 vEvvrgekTseetv 160
                 +E++rge+T+e+  
  EHT99441.1 316 IELIRGEQTEEAFA 329
                 8********99865 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-06    0.0024      34     141 ..     178     278 ..     169     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
  Glu_dehyd_C  34 alvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsretpvdeipeaseemdlvvEaTGsakhafeaiealapnGvaaLlG 131
                  + v+G G lG +a+  l++   g + v+ + +   pd++    ++lG+  v     +  e+ + ++++dl+v++  +++ +   +  l++nG  +L+G
   EHT99441.1 178 VGVIGLGGLGHMAV-KLAS-ALGAD-VTLFTT--SPDKAE-DARRLGSRHVVV-SRHAAEMQACQQSLDLIVDCVAAPHDLDPYLATLKTNGRLVLVG 268
                  56999999999995.5543.46776.666664..444444.479*****9976.5556777799***********999999999************** PP

  Glu_dehyd_C 132 vpedsevevd 141
                  +p + +++ d
   EHT99441.1 269 IPDSPHASPD 278
                  **98766555 PP

>> IGFBP  Insulin-like growth factor binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   8.1e-06      0.01      20      44 ..      85     109 ..      77     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.1e-06
       IGFBP  20 gvelvedgCgcCkvCarqegesCgv 44 
                 gv ++ d+C+ C+ C +qe++ C+ 
  EHT99441.1  85 GVGVMVDACRTCRFCQQQEEQYCEA 109
                 566689*****************84 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     7e-05     0.089      12      87 ..     175     249 ..     167     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7e-05
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatasee 87 
                   + kv +iG G +++ ++k  +a g++ v+ +  + ++a++ ++  + + +  ++  e++++ ++ d+++ ++a+++
    EHT99441.1 175 GDKVGVIGLGGLGHMAVKLASALGAD-VTLFTTSPDKAEDARRLGSRHVVVSRHAAEMQACQQSLDLIVDCVAAPH 249
                   679************99988888887.************9777667777788999******************997 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.9e-05      0.11       1      83 [.     178     251 ..     178     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.9e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGGGHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnlsppissl 83 
                      v +iG G+ G+ +++l ++ +    ++t+ + s +k+e +       r+ ++ + ++ ++a ++a +++  dl+v+++    +l
       EHT99441.1 178 VGVIGLGGLGHMAVKLASALGA---DVTLFTTSPDKAEDAR------RLGSRHVVVSRHAAEMQA-CQQSlDLIVDCVAAPHDL 251
                      689***************9987...5**********66553......566666666666664454.66666******9877665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.3e-05      0.12       3      46 ..     180     224 ..     178     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.3e-05
                 EES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT.SEEEE CS
      TrkA_N   3 iiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg.levvv 46 
                 +iGlG +G   ++  s+ g  dv++  ++++++e +r+ g  +vvv
  EHT99441.1 180 VIGLGGLGHMAVKLASAlGA-DVTLFTTSPDKAEDARRLGsRHVVV 224
                 9****************777.7******************544443 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.9e-05      0.13       1      47 [.     178     225 ..     178     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.9e-05
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHHHHHHCEEEEETT CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsr.rlealkknGlrltseg 47 
                 + ++G+G++G + a+kLa   gadvtl + s+ ++e+ ++ G+r   ++
  EHT99441.1 178 VGVIGLGGLGHM-AVKLASaLGADVTLFTTSPdKAEDARRLGSRHVVVS 225
                 579*******86.89999989***********99999999998866655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.19       1      70 [.     177     246 ..     177     267 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...-EEECECHHHHHH.H-SEEEE-S- CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg...vkvtavdneeaae.eadvvvlavk 70 
                    k+g+iG G +g+  ++ ++a g    ++++  + +p+kae +++  +   v   + +  +a++ + d +v +v 
     EHT99441.1 177 KVGVIGLGGLGHMAVKLASALG---ADVTLF-TTSPDKAEDARRLGSrhvVVSRHAAEMQACQqSLDLIVDCVA 246
                    79********************...****66.99*****99887777554222233444555545677776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2483.37
//
Query:       EHT99442.1  [L=130]
Description: hypothetical protein CKS_1452 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-26   90.0   0.1    8.1e-26   89.7   0.1    1.1  1  HxlR            HxlR-like helix-turn-helix
    8.8e-05   22.4   0.0    0.00014   21.8   0.0    1.4  1  PadR            Transcriptional regulator PadR-like family
     0.0017   18.3   0.1      0.003   17.5   0.1    1.4  1  MarR            MarR family
     0.0067   16.3   0.0      0.012   15.5   0.0    1.4  1  MarR_2          MarR family
      0.007   16.5   0.0      0.011   15.9   0.0    1.3  1  B-block_TFIIIC  B-block binding subunit of TFIIIC
  ------ inclusion threshold ------
      0.034   13.9   0.0      0.035   13.8   0.0    1.1  1  DUF4423         Domain of unknown function (DUF4423)
        0.1   12.7   0.0       0.19   11.8   0.0    1.4  1  HTH_20          Helix-turn-helix domain
       0.16   12.0   0.0       0.24   11.4   0.0    1.2  1  HTH_45          Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.1   3.6e-29   8.1e-26       3      87 ..      25     112 ..      23     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 3.6e-29
                 HSTTHHHHHHHHTT...S-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHH CS
        HxlR   3 ggkWkllilvellk...gkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyl 87 
                 + kW++++l++l++   g+ R++el+r l +is+kmL q+L+eLeq gli+r+vy+ vPpkveY+lt+ Gr+ ++ +++l++wg e+ 
  EHT99442.1  25 SVKWSTMVLHALFHwpgGRARTGELQRSLQGISKKMLFQTLKELEQRGLISRHVYDVVPPKVEYQLTALGRTFAEPVEQLYQWGLENQ 112
                 569**********999899*****************************************************************8875 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.1e-08   0.00014      18      72 ..      48      97 ..      32      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.1e-08
                HHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHH CS
        PadR 18 eleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrre 72
                el+++++g   +s+  l+++Lk+Le+ gl++++  +  + pp+  Y+lT+ Gr+ 
  EHT99442.1 48 ELQRSLQG---ISKKMLFQTLKELEQRGLISRHVYD--VVPPKVEYQLTALGRTF 97
                56666666...78889*****************998..68************975 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.3e-06     0.003       8      49 ..      32      76 ..      29      77 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
                HHHHHHHSTT..EEHHHHHHHH.TS-HHHHHHHHHHHHHTTSEEE CS
        MarR  8 iLrilyeqgp..lsvseLakkl.gvskstvtrvldrLekkGlieR 49
                +L+ l ++++  ++  eL++ l g+sk ++  +l++Le++Gli+R
  EHT99442.1 32 VLHALFHWPGgrARTGELQRSLqGISKKMLFQTLKELEQRGLISR 76
                677777777634556699998846********************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.4e-06     0.012       9      53 ..      31      76 ..      29      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.4e-06
                HHHHHHHCTTTSEEEHHHHHHHH.TSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrl.glsksavsrilkrLvaaGLver 53
                +vL+aL + pg++ + gel r l g+sk  + ++lk+L+++GL+ r
  EHT99442.1 31 MVLHALFHWPGGRARTGELQRSLqGISKKMLFQTLKELEQRGLISR 76
                79*******************6637*******************87 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.8e-06     0.011      21      53 ..      50      79 ..      42      89 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.8e-06
  B-block_TFIIIC 21 qsdLakeskqdprslfyrlksLekkgLIvkqsi 53
                    q++   + ++++++lf  lk Le+ gLI +  +
      EHT99442.1 50 QRS---LQGISKKMLFQTLKELEQRGLISRHVY 79
                    444...347999****************99755 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.035      19      71 ..      26      77 ..      19     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
     DUF4423 19 ssWyypvirellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkd 71
                 +W  +v+++l   + ++a + el++ l+  is++   ++l+ L++ gl+ ++
  EHT99442.1 26 VKWSTMVLHALFHWPGGRARTGELQRSLQ-GISKKMLFQTLKELEQRGLISRH 77
                58***************************.9*******************986 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.7e-05      0.19      15      56 ..      32      76 ..      29      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.7e-05
                HHHHH..STCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 15 ilraL..araegltaselaerl.dlskntlsyHLrvLeeagLvev 56
                +l aL  ++++ +  +el + l ++sk+ l + L++Le+ gL+ +
  EHT99442.1 32 VLHALfhWPGGRARTGELQRSLqGISKKMLFQTLKELEQRGLISR 76
                899999999999999*******88******************976 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.24      32      71 ..      57     103 ..      53     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      HTH_45  32 sykllnkYLdmLvekgli.......kkskekYvlTekGlelleklke 71 
                 s k+l + L+ L ++gli          k +Y+lT+ G+ + e +++
  EHT99442.1  57 SKKMLFQTLKELEQRGLIsrhvydvVPPKVEYQLTALGRTFAEPVEQ 103
                 66788899*********99998887889***********99987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1012.20
//
Query:       EHT99443.1  [L=371]
Description: putative methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-31  109.2   0.0    2.6e-31  108.7   0.0    1.2  1  SpoU_methylase  SpoU rRNA Methylase family
    4.3e-12   46.1   0.0    1.3e-11   44.6   0.0    1.8  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   2.9e-35   2.6e-31       3     141 ..     226     363 ..     224     364 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 2.9e-35
                     EEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCSHHHTT CS
  SpoU_methylase   3 ivvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslseidlkek 96 
                     +++l+++++p+NlGai+R+++ fg+++l++ ++ s  l +  a+r+a g +e++++   +++ + l++++++g+++v+ts+ +g++lse++l+ k
      EHT99443.1 226 VLALEDVSNPHNLGAIMRSCAHFGVKGLLV-NDASL-LESGAAVRTAEGGAEHVQAISGTTFTQGLDAFRKAGYTIVTTSShQGTPLSEAELPAK 318
                     789**********************99999.54665.89999*************************************999************* PP

                     EEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
  SpoU_methylase  97 valvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
                     ++lv+G+E++Gls+++ ++ d  ++I   g+veSLNv+vA+++ll
      EHT99443.1 319 MVLVLGQEREGLSDSTFQQGDMSLSIGGTGNVESLNVSVATGVLL 363
                     *******************************************97 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.5e-15   1.3e-11       2      72 ..     137     207 ..     136     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.5e-15
  SpoU_sub_bind   2 iyGlhaVleaLksgrr.iekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkp 72 
                    +yG +a++++ +s+++ i++ ++ ++   +r+++ l+++++++  ++ vd++++ k sgt++H Gv+  +k+
     EHT99443.1 137 VYGENACQALFQSRPEsIVRAWFVQS-VTPRFRDALRWLAANRKAYHVVDDAEITKASGTEHHGGVCFLIKK 207
                    8*************999*********.*****************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 3323.14
//
Query:       EHT99444.1  [L=226]
Description: DTW domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-43  148.6   0.0    2.2e-43  148.3   0.0    1.0  1  DTW       DTW domain


Domain annotation for each model (and alignments):
>> DTW  DTW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   1.2e-47   2.2e-43       3     196 ..      30     213 ..      29     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 1.2e-47
         DTW   3 lCerCllpaevclcsslppleklpikvlilqhpkEkkkstntarllalslanlrvvvgsdveeeaklsallkdpkrksvllFPsknaksledllaseaa 101
                 +C+ Cllp+++clc+s+ + ++ + ++++++ + E  k++nt+rl+a++l+n++++ +s++e+++ l a ++d  ++++++FP ++a + +++l+    
  EHT99444.1  30 RCQDCLLPEKQCLCDSIVT-QSARSRFCLVMFDTEPMKPSNTGRLIADVLPNTQAFGWSRTEPDPLLLAAVADGAYQPMVVFPASYADDGREVLHAPP- 126
                 7******************.8889*******************************************************************9998752. PP

         DTW 102 kasekkeefeekrlillDGTWsqAkkilrrnprledlpqvkLkkgesseyerlRkqpkkgclSTiEaiayaLkeleeekealdnLldvfkamvek 196
                        +++++ +i+lDGTW++A+k++r++p+l+++p ++L+ ++ s+y  lR+++ +g+ +T+E +a +L++++ +++a+++L + f+++ + 
  EHT99444.1 127 ------LSGKPPLFIMLDGTWNEARKMFRKSPWLDRFPVLSLNVTSPSRY-TLREAHGEGQHCTAEIAAALLQQAG-DSDAAQALSRHFEQFRQA 213
                 ......46899********************************99*****.*************************.799**********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1694.20
//
Query:       EHT99445.1  [L=891]
Description: protein acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-74  247.7   0.6    1.8e-73  246.7   0.6    1.5  1  ATP-grasp_5      ATP-grasp domain
    1.1e-43  148.4   0.1    2.9e-43  147.0   0.1    1.8  2  Succ_CoA_lig     Succinyl-CoA ligase like flavodoxin domain
    4.9e-21   75.4   0.1      4e-20   72.4   0.0    2.7  3  CoA_binding_2    CoA binding domain
    8.7e-06   26.5   0.0    2.4e-05   25.0   0.0    1.8  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00012   22.3   0.0    0.00027   21.2   0.0    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0044   16.6   0.1        2.3    7.8   0.0    2.9  3  ATP-grasp        ATP-grasp domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.023   14.6   0.0    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.055   13.6   0.0         19    5.3   0.0    2.6  3  Acetyltransf_4   Acetyltransferase (GNAT) domain
       0.11   12.0   0.0       0.24   10.8   0.0    1.6  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi


Domain annotation for each model (and alignments):
>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.7   0.6     9e-77   1.8e-73       1     221 [.     472     693 ..     472     694 .. 0.97

  Alignments for each domain:
  == domain 1  score: 246.7 bits;  conditional E-value: 9e-77
  ATP-grasp_5   1 kalaegrtlLteaeakelleaygipvvetrlassaeeaveaaeeigypvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeilervkekspearie 98 
                  +al++g   L+++e++ +l+ayg+ +++t++a+++++av +ae+igypv+lK++spd+ hK+dv+Gv+l l++a+evr+aa++i++rvk++ p+arie
   EHT99445.1 472 QALNQGVLSLDTHEVQPVLKAYGLATLPTWIAKDSDDAVTIAEQIGYPVALKLRSPDVAHKSDVQGVMLYLRNAAEVRRAADAIIDRVKQTLPSARIE 569
                  578899999***************************************************************************************** PP

  ATP-grasp_5  99 gvlVqemakr.ggrElivgvteDpvFGpvilfGlGGtavevlkdvavalpplnstlareli.ertkaskllkgvrgekkadlaaleellvrlsqLvvd 194
                  g++Vq ma+r g++El++ v++Dp+FGp+i++G+GG+++++ k++avalppln+tlar+l+ +++k  k+ ++     ++d+aal++llv++s+Lvvd
   EHT99445.1 570 GLVVQTMANRaGAQELRIVVEQDPLFGPIIMLGEGGVEWQAEKQAAVALPPLNMTLARYLViQAIKGGKIRSRSALI-PLDVAALSQLLVQVSNLVVD 666
                  *******9999************************************************85599*********9999.******************** PP

  ATP-grasp_5 195 lpeIreldinPllveeegvvalDarir 221
                  +peI++ldi+Pll+ ++ ++ lD+ + 
   EHT99445.1 667 CPEIARLDIHPLLAAGSDFTLLDVTLS 693
                  ***********************9876 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.1   1.5e-46   2.9e-43       1     137 [.     147     279 ..     147     280 .. 0.97
   2 ?   -3.9   0.0       5.4   1.1e+04     110     128 ..     411     429 ..     409     435 .. 0.75

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 1.5e-46
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGneadvdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseagar 97 
                   +G+ia+isqS a+  ++ldwa++r+lgfs ++ lG+++d+dv dll++l +d +t++illylE+++d+r+f+sa r+a+r+kp++++ksGrs+++++
    EHT99445.1 147 KGRIAFISQSSAVSNTILDWAQQRNLGFSWFIALGDSLDTDVDDLLDFLVRDGKTSAILLYLEHLSDARRFVSASRSASRNKPILIIKSGRSRQAQA 243
                   69******************************************************************************************99999 PP

  Succ_CoA_lig  98 aaashtgalagsdavvdaafrqaGvlrvdsleelfdaael 137
                      +h    +g da++daa+++aG+lrv++++elf+a+e 
    EHT99445.1 244 LLGTH----SGLDAAWDAAIQRAGLLRVQDTHELFTAVES 279
                   99888....699************************9985 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5.4
  Succ_CoA_lig 110 davvdaafrqaGvlrvdsl 128
                   +++ + af qaG+   ++ 
    EHT99445.1 411 SQAARRAFTQAGIPTWRTP 429
                   5788899999999776665 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0     2e-23     4e-20       1     113 [.      13     129 ..      13     132 .. 0.95
   2 ?   -2.7   0.0         4   8.1e+03      82     101 ..     151     170 ..     145     174 .. 0.56
   3 ?   -2.4   0.1       3.2   6.3e+03      55      55 ..     534     534 ..     460     585 .. 0.54

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2e-23
                    --EEEET--S-TTSHHHHHHHHHHH...HT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT..--- CS
  CoA_binding_2   1 rtiaVvGasdnpgkfgykvlrylle...hglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpg..sed 91 
                    ++iaV+Gas +pg++gy ++r+ll+   +g pv+pV+pk++++ g+ +++++ + p ++dl++++t+ ++ +e++++++++g+ka ++ ++  s+ 
     EHT99445.1  13 KSIAVIGASIKPGRAGYFMMRNLLAggfSG-PVLPVTPKYKAVSGVLAWPDIHSLPFAPDLAVICTHHKRNLELLQQLGEKGCKACIILSAptSQL 107
                    79***********************99888.**********************647*******************************999988999 PP

                    HHHHHHHHHTT-EEE.ES-HHH CS
  CoA_binding_2  92 eeaaelaeeagirvvgdrCilv 113
                    +e+ + a + +ir++g++++++
     EHT99445.1 108 PELKQCASRWQIRLLGPNSLGL 129
                    *******************987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
                    EEEE-TT---HHHHHHHHHT CS
  CoA_binding_2  82 avwlqpgsedeeaaelaeea 101
                    a++ q+++++++++++a+++
     EHT99445.1 151 AFISQSSAVSNTILDWAQQR 170
                    55555555555555555554 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.2
                    T CS
  CoA_binding_2  55 p 55 
                    +
     EHT99445.1 534 D 534
                    1 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.2e-08   2.4e-05       3     138 .]     727     864 ..     725     864 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.2e-08
  Acetyltransf_3   3 lLrplteeDleal.felrsdpevmr.ylpe.pltleeaeewlerawaeeseeegygwaivlkdtg..v.iGsv.glrdleeedeeaelgymlaps 90 
                     l+rp+ +eD e+l   + s+ + +  y++  ++  e +++ l+++ + ++++e    a+  +++g  + iG+   + d+++ d  ae++ +++++
      EHT99445.1 727 LFRPILPED-EPLlRDFISQVTKEDlYYRYfSEINEFTHDDLANMTQIDYDREMAIVAV-RQHQGqpEiIGVTrAISDADNID--AEFSVLVRSD 817
                     678888888.4441456554333323233324455666777777666655555555666.444444644****5555666655..9********* PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                       g G ++  ++ +++y  + +gl++l   + + N++++++++kl f+
      EHT99445.1 818 LKGLGMGRRLLEKMIRYT-RAHGLQQLNGITMPGNRGMVTLAKKLNFN 864
                     ******************.8888**********************985 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.4e-07   0.00027      17     117 .]     763     863 ..     746     863 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.4e-07
                     HHHHHHH..HHHHHHSTTCEEEEEEET....TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETT CS
  Acetyltransf_1  17 edaseee..feesfsleaegllvaeed....geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveed 104
                      +++++   + ++   + e  +va +     +e+iG  ++  + d   +  +  s+ V+++  g G G++Lle+++++ r +g++ +  + + + 
      EHT99445.1 763 THDDLANmtQIDY---DREMAIVAVRQhqgqPEIIGVTRAISDAD---NIDAEFSVLVRSDLKGLGMGRRLLEKMIRYTRAHGLQQLnGI-TMPG 850
                     3333333445555...56655554444456677*****9999999...888889******************************886333.6566 PP

                     EHHHHHHHHHTTE CS
  Acetyltransf_1 105 ndaairlYeklGF 117
                     n++++ l +kl F
      EHT99445.1 851 NRGMVTLAKKLNF 863
                     9999999877877 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.8   1.6e+03      84     131 ..     427     475 ..     424     481 .. 0.76
   2 !    5.2   0.0    0.0071        14       2      61 ..     491     555 ..     490     567 .. 0.76
   3 !    7.8   0.0    0.0012       2.3      71     100 ..     772     801 ..     756     813 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.8
                 EETTC-.EEE--EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHH CS
   ATP-grasp  84 rsaeGe.tafypvvetvqedgilrlsvapaevsekaqkkaeeiakkive 131
                 r+ eG+ taf+ +ve  ++++ lr+  a  +  +++ ++a++i++++++
  EHT99445.1 427 RTPEGTvTAFMHQVEYRRNQKLLRETPALPASLTQDSAQAHQILSQALN 475
                 6677874678889999999999998877555566788899999887765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0071
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEES....SS-CTTTTEEE.ECTCCGHHCHHHHC CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKar....rlgydGkGqsv.vrseedleqaleal 61 
                 ++ gl++ + +++++++++  +ae++g+pv +K r     + +d +G ++ +r+++++++a++a+
  EHT99445.1 491 KAYGLATLPTWIAKDSDDAVTIAEQIGYPVALKLRspdvAHKSDVQGVMLyLRNAAEVRRAADAI 555
                 567899999999999999999************65222256788888764367777777777665 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0012
                 ----SEEEEEEEEEETTC-EEE--EEEEEE CS
   ATP-grasp  71 fvpfekElsvlvvrsaeGetafypvvetvq 100
                  +++++E+++++vr+ +G+ +++ v+  + 
  EHT99445.1 772 QIDYDREMAIVAVRQHQGQPEIIGVTRAIS 801
                 699***************999988887765 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.2e-05     0.023      39      91 ..     790     848 ..     748     875 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
  Acetyltransf_10  39 ggkivGviel.rdgshis...llfVdpeyrgqGigkaLleaveeeaekdgikl..eltv 91 
                      + +i+Gv +  +d + i     + V+++ +g G+g++Lle+++++ + +g+++   +t+
       EHT99445.1 790 QPEIIGVTRAiSDADNIDaefSVLVRSDLKGLGMGRRLLEKMIRYTRAHGLQQlnGITM 848
                      357899997778888665222568*********************99998885555555 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011        21     105     138 ..     489     522 ..     477     527 .. 0.89
   2 ?   -3.5   0.0       5.1     1e+04      83     127 ..     541     584 ..     537     585 .. 0.77
   3 ?    5.3   0.0    0.0097        19      66     136 ..     797     865 ..     768     872 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
  Acetyltransf_4 105 vlkeqnienllaeiaspnensiqfhkalGFelvg 138
                     vlk++++ +l + ia++ + ++ +++++G+ ++ 
      EHT99445.1 489 VLKAYGLATLPTWIAKDSDDAVTIAEQIGYPVAL 522
                     78****************************8775 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.1
  Acetyltransf_4  83 ylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiq 127
                     yl +++++ +  + ++id ++q l    ie l+ +++++++ +++
      EHT99445.1 541 YL-RNAAEVRRAADAIIDRVKQTLPSARIEGLVVQTMANRAGAQE 584
                     66.466666666777999999999999999999999988887765 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0097
  Acetyltransf_4  66 lgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFel 136
                      +++ + a +  ae sv++ + d +  g+gr l++ ++ + ++ ++++l+  ++  n   + ++k+l F++
      EHT99445.1 797 TRAISD-ADNIDAEFSVLV-RSDLKGLGMGRRLLEKMIRYTRAHGLQQLNGITMPGNRGMVTLAKKLNFNV 865
                     455566.78889*******.589**************************9998888888888888887775 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.24       5      44 ..     486     523 ..     482     526 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                  HHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEE CS
  CPSase_L_D2   5 akealkkinvpvvpssaapvetleealaiakeigyPviik 44 
                   +  lk+ +  + p  +a  ++ ++a++ia++igyPv +k
   EHT99445.1 486 VQPVLKAYGLATLPTWIA--KDSDDAVTIAEQIGYPVALK 523
                  566777888888888888..9****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 6368.97
//
Query:       EHT99446.1  [L=451]
Description: phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-30  103.3   0.0    1.6e-21   76.6   0.0    2.5  2  PLDc_2    PLD-like domain
    1.6e-11   43.8   0.2    3.5e-06   26.9   0.0    2.5  2  PLDc      Phospholipase D Active site motif
  ------ inclusion threshold ------
        0.1   13.1   0.2       0.25   11.8   0.2    1.6  1  Sld5      GINS complex protein


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.8e-09   2.3e-05       1      98 [.      40     153 ..      40     190 .. 0.80
   2 !   76.6   0.0   2.7e-25   1.6e-21       2     128 ..     257     404 ..     256     420 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.8e-09
      PLDc_2   1 liqliksAkksidiatyyf...vsdreildallk..aakrgvkvrilldskkd............dagavdeaslkelkellleagvevrvfetllgsl 82 
                 l++ i+sA+++i+i+  y+      r++++al++   a+   ++ il+d +++            +a+   e  +++ ++++  +g++v   e +lg l
  EHT99446.1  40 LLEKIASAQSRICIVALYLendDAGRAVMNALYAakIARPQLDISILVDWHRAqrgrigaargvtNADWYCEMAQQHPDSVIPVYGIPVNTRE-ALGVL 137
                 5789***************444444557****6643556669********999*******999996666677888888999999999987633.4699* PP

      PLDc_2  83 HaKlylidgktvivGS 98 
                 H K+++id+  ++ G 
  EHT99446.1 138 HLKGFIIDDMLLYSGA 153
                 ********99888763 PP

  == domain 2  score: 76.6 bits;  conditional E-value: 2.7e-25
      PLDc_2   2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkd.dagavdeaslkelkellleagvevrvfe...t......ll.........gs 81 
                  +l+  A+k++ i+t+yf+    ++++++ + ++g++v+i++++k++ d+++ +++ +k + +l++ +++++r f    +      +l         +s
  EHT99446.1 257 FHLMPCAEKKLTICTPYFNLPALLVRNIISLLRQGKDVEIIVGDKTAnDFYIAPDEPFKIIGALPYLYEINLRRFLsrlQyyvsngQLivrlwkegeNS 355
                 678899************999999********************888899999**********************9644155544511566678899** PP

      PLDc_2  82 lHaKlylidgktvivGSsNltkrgldlnlElnvviedk..elakeleee 128
                 +H K++++d+++ ++++ Nl++r+++l+lE++v i+d+  +la++ ++e
  EHT99446.1 356 YHLKGMWVDDEWQLITGNNLNPRAWRLDLENAVLIHDPhqQLADQRQHE 404
                 **************************************87777777665 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   5.6e-06     0.034       3      28 .]     135     159 ..     133     159 .. 0.93
   2 !   26.9   0.0   5.9e-10   3.5e-06       3      28 .]     354     379 ..     353     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.6e-06
                 BEE---EEEETTTEEEEE---SSHHH CS
        PLDc   3 gthHqKivivDdrvafvGgaNLcdgr 28 
                 g++H K++i+Dd   +++ga+++d +
  EHT99446.1 135 GVLHLKGFIIDDM-LLYSGASINDVY 159
                 89***********.*********986 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 5.9e-10
                 BEE---EEEETTTEEEEE---SSHHH CS
        PLDc   3 gthHqKivivDdrvafvGgaNLcdgr 28 
                 +++H K+++vDd++ +++g+NL+ ++
  EHT99446.1 354 NSYHLKGMWVDDEWQLITGNNLNPRA 379
                 68*********************986 PP

>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   4.3e-05      0.25      41      83 ..     395     447 ..     347     450 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.3e-05
                 SSSTTTTTTHHHHH...HHHHHHHT........HCHHHHHHHHHHHHHHHHHH CS
        Sld5  41 sdlpslpphflela...vkllelard.......ldelkrllrdllevRlakir 83 
                 ++l ++ +h l l    +++ +++r+       + ++++l+r l+++R++++ 
  EHT99446.1 395 QQLADQRQHELMLIrqhTTVVKHFRElesiadyPAKVRKLIRRLRRIRIDRLI 447
                 57888888888888444444444555778888*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3484.72
//
Query:       EHT99447.1  [L=431]
Description: alpha-ketoglutarate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-38  131.0  26.9      2e-24   86.3   9.4    2.0  2  Sugar_tr    Sugar (and other) transporter
    4.3e-27   95.0  36.0    1.1e-17   64.0  16.7    2.2  2  MFS_1       Major Facilitator Superfamily
    3.1e-09   35.9  22.8    9.2e-05   21.2   8.4    3.4  3  MFS_2       MFS/sugar transport protein
    2.5e-06   26.6   5.9    9.5e-05   21.4   0.4    3.3  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.015   15.5   0.6      0.015   15.5   0.6    3.7  4  AzlD        Branched-chain amino acid transport protein (AzlD


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   9.4   5.6e-28     2e-24       3     194 ..      22     219 ..      20     221 .. 0.89
   2 !   53.6   8.1   4.5e-18   1.6e-14     233     436 ..     223     422 ..     211     431 .] 0.82

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 5.6e-28
                 HHHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT. CS
    Sugar_tr   3 lvaalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk. 99 
                 +v a +g l++++d++v+++f+   + +++ + +++++       ++  ++++ ++ + iG+ ++g++gdr GRkks+li++ +++ g++++a+ +g+ 
  EHT99447.1  22 IVGASSGnLVEWFDFYVYSFFSLYFAHIFFPQGDTTTQLL-----QTAGVFAAGFLMRPIGGWLFGYIGDRHGRKKSMLISVCMMCFGSLVIACLPGYe 115
                 55555555**************999977777777776644.....569999999999***************************************999 PP

                 ....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 100 ....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilll 189
                      +  +l+++R++ G++vG++++++ +y+sE+A +   g+  s++ + ++ G+l a  + ++l+         ++gwri+++l +++a++ l l+ 
  EHT99447.1 116 sigiAAPALLLLARMFQGLSVGGEYGTSATYMSEVALEGRKGFYASFQYVTLIGGQLAAVLTVVVLQFLLTdhelrTWGWRIPFFLGAALAVVALWLRR 214
                 99999999*************************************************99999888855555579*****************99998888 PP

                 GS--- CS
    Sugar_tr 190 flPES 194
                  l+E+
  EHT99447.1 215 SLDET 219
                 88887 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 4.5e-18
                 HHHH........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHH CS
    Sugar_tr 233 aeqeee...kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaa 325
                 ++  +e     s+  ll+++t  +++l++++  ++  l+ + + +y+  ++ ++ g++ +    l+t+ + v   ++ +++  l+d++GRRt +++ +a
  EHT99447.1 223 QT--REhrdAGSVIGLLRNHT--KPFLMVLGFTAGGSLSFYTFTTYMQKYLVNTSGMDAKtasGLMTGALLVYMLLQPIIG-GLSDKIGRRTSMMVFGA 316
                 22..22335789999999966..9***********************************9766667777777777777777.9**************** PP

                 HHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHH.HHHHHHHHHHHHHHHHHCHHHT-HHHHHHH CS
    Sugar_tr 326 gmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiava.vnwlanflisllfpiiteaigggyvflvfa 423
                 g+aic+v +   +ll++ +s ++++v+i++ +l + +++   g    +l +E+fp++vR+++  +++a +n ++     ++   +  +  ++++f++  
  EHT99447.1 317 GAAICTVPIL--TLLQNVQSPGMAFVLIMLALLITSFYTSNSG----ILKAEMFPPQVRTLGVGLSYAvANAIFGGSAEYVALLMKHHDMETMFFWYVS 409
                 *********6..888888889********99999999993333....457***************98625889999999999988877667******** PP

                 HHHHHHHHHHHHH CS
    Sugar_tr 424 glavlfiifvfff 436
                 g+ +l++++ ++ 
  EHT99447.1 410 GMGALAFVVSLLL 422
                 ***9999887665 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0  16.7   3.1e-21   1.1e-17      24     245 ..      53     285 ..      25     290 .. 0.73
   2 !   42.1  16.2   1.4e-14   5.2e-11      11     170 ..     257     421 ..     256     428 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 3.1e-21
       MFS_1  24 aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa......sslw.lllvlrvlqGlgagalfpagaaliadwf 114
                 + d + +  +   ++++ +l   ++  ++G+++dr+Gr++ +l+++ ++++g+l+++ ++      +  + lll++r++qGl  g+ + ++a+++++++
  EHT99447.1  53 QGDTTTQLLQTAGVFAAGFLMRPIGGWLFGYIGDRHGRKKSMLISVCMMCFGSLVIAcLPgyesigIAAPaLLLLARMFQGLSVGGEYGTSATYMSEVA 151
                 55555555566668888888888999999999********************66666462344456557779*************************** PP

       MFS_1 115 pkeergraigllsa...gfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallk 205
                  + ++g++ ++ ++   g +l+a+l+ ++  +l++        Wr +f++ a+++++a     l+l+++  e + k ++e       a+ v ++   ++
  EHT99447.1 152 LEGRKGFYASFQYVtliGGQLAAVLTVVVLQFLLTDHElrtwgWRIPFFLGAALAVVA-----LWLRRSLDETSDKQTREH----RDAGSVIGLLRNHT 241
                 *************989999999999999999999665567777***************.....555555555555555555....22222222555566 PP

       MFS_1 206 dpvlwillialllfffgfsglltllplylqevlgls.....glll 245
                 +p+l ++l   +++++ f++++t++  yl+ + g++     gl++
  EHT99447.1 242 KPFL-MVLGFTAGGSLSFYTFTTYMQKYLVNTSGMDaktasGLMT 285
                 6655.355556666778888****************544433222 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 1.4e-14
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa..sslw.lllvlrvlqGlgagalfpa 105
                 +++++++ +  +l ++ g+++ +++ l+t+  l+++++++++G lsd++Grr  +++  ++ a++ + +l++    +++ + +vl +l+ l +++++++
  EHT99447.1 257 SFYTFTTYMQKYLVNTSGMDAKTASGLMTGALLVYMLLQPIIGGLSDKIGRRTSMMVFGAGAAICtVPILTLLqnVQSPgMAFVLIMLALLITSFYTSN 355
                 56677777766999999************************************6666666666662444444347778889999999999********* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav.fyilaivsllafvlfll 170
                 +++l a++fp++ r++++gl +a +++ +   +   +ll+ +   + + f+ + ++++lafv+ ll
  EHT99447.1 356 SGILKAEMFPPQVRTLGVGLSYAVANAIFGGSAEYVALLMKHHDMETMfFWYVSGMGALAFVVSLL 421
                 ***********************9998777777777788888888887799999999999885333 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   3.0   6.8e-05      0.25     233     327 ..      29     135 ..       8     154 .. 0.75
   2 !   12.5   0.1   1.1e-05     0.038     140     219 ..     163     239 ..     152     256 .. 0.77
   3 !   21.2   8.4   2.6e-08   9.2e-05      12     112 ..     257     353 ..     248     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.8e-05
       MFS_2 233 fllaalalgvlnglllYyltyvlg.ngsaasvfllvv.tisal....lgiplwqplakrlgkkntyllgalltivllvlvlll......qpsnlllflv 319
                  l++++ ++v+   +lY++  +    ++  +++ ++  +++++    +g  l+ ++  r g+k+++l++ +++ ++++++  l      + +  +l+l+
  EHT99447.1  29 NLVEWFDFYVYSFFSLYFAHIFFPqGDTTTQLLQTAGvFAAGFlmrpIGGWLFGYIGDRHGRKKSMLISVCMMCFGSLVIACLpgyesiGIAAPALLLL 127
                 5788999999999999999999985555555555555577777666677788999999999******************99997666555555555555 PP

       MFS_2 320 llviagfg 327
                 + +  g++
  EHT99447.1 128 ARMFQGLS 135
                 55555555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.1e-05
       MFS_2 140 sflsvlggvlaailafllvlilgg.lkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlke 219
                 ++++++gg+laa+l+++++++l +  ++   g++i  +++a+L++++ ++  +         +k++ e + ++s+++ l++
  EHT99447.1 163 QYVTLIGGQLAAVLTVVVLQFLLTdHELRTWGWRIPFFLGAALAVVALWLRRSLDET----SDKQTREHRDAGSVIGLLRN 239
                 68899*****************9977778889*****************98444333....44556666666666666665 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 2.6e-08
       MFS_2  12 lsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwllvtyil.lri 109
                 + ++++ty++ ++++++g++a  ++ ++  a lv  +  pi+G l+dk    +Grr++ ++++a + a+ ++ + t ++  qs+ ++++l+++ l    
  EHT99447.1 257 SFYTFTTYMQKYLVNTSGMDAKTASGLMTGALLVYMLLQPIIGGLSDK----IGRRTSMMVFGAGA-AICTVPILTLLQNVQSPGMAFVLIMLALlITS 350
                 56799*****************************************96....6****999988754.44555566666656675555555444440344 PP

       MFS_2 110 lyt 112
                 +yt
  EHT99447.1 351 FYT 353
                 444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.4   0.00096       3.4     291     352 ..      99     161 ..      38     171 .. 0.82
   2 !   21.4   0.4   2.7e-08   9.5e-05      17      86 ..     260     330 ..     250     422 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00096
  MFS_1_like 291 klliiallayilrfllyaii..enawlvlpievLhgisfgllwaaaveyvskiapksleatgqg 352
                 ++++++ l +i+ + +y +i    + l+l++ +++g+s+g  +++ ++y+s++a ++ ++++ +
  EHT99447.1  99 CMMCFGSL-VIACLPGYESIgiAAPALLLLARMFQGLSVGGEYGTSATYMSEVALEGRKGFYAS 161
                 34444433.3455666666668899999999********************9999888888765 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 2.7e-08
  MFS_1_like  17 sllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfip 86 
                 ++  Y+++yl    g++a+    +++ + l+ +l +pi+g l+D++g+r+ ++++++ ++++++ +l+++ 
  EHT99447.1 260 TFTTYMQKYLVnTSGMDAKTASGLMTGALLVYMLLQPIIGGLSDKIGRRTSMMVFGAGAAICTVPILTLLQ 330
                 6778*****97478*******************************************99999988888766 PP

>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.29     1e+03       4      52 ..      62     111 ..      59     133 .. 0.76
   2 ?   15.5   0.6   4.2e-06     0.015      41      84 ..     173     216 ..     160     217 .. 0.92
   3 ?   -0.0   0.2      0.28     1e+03      53      84 ..     329     356 ..     301     362 .. 0.64
   4 ?   -0.5   0.8      0.38   1.4e+03      42      68 ..     342     368 ..     323     418 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
        AzlD   4 aillmalvtyltRylplllfrr.lklppwlqrllryvPiavLaaliapel 52 
                  +++++++ +l+R ++ +lf+   + + + +++l +v +  ++ l++ +l
  EHT99447.1  62 QTAGVFAAGFLMRPIGGWLFGYiGDRHGRKKSMLISVCMMCFGSLVIACL 111
                 56788888899999999999887777777778888877777777777766 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.2e-06
        AzlD  41 iavLaaliapellaetgklsaslglarllaalvavlvalltrnl 84 
                 +avL++++++ ll++++  +  + ++ +l+a++av++ +l+r+l
  EHT99447.1 173 AAVLTVVVLQFLLTDHELRTWGWRIPFFLGAALAVVALWLRRSL 216
                 49*************99999999*******************86 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.28
        AzlD  53 laetgklsaslglarllaalvavlvalltrnl 84 
                 l  ++   +s g+a +l +l+ ++ +++t n 
  EHT99447.1 329 L--QNV--QSPGMAFVLIMLALLITSFYTSNS 356
                 2..222..345778888888888877777765 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.38
        AzlD  42 avLaaliapellaetgklsaslglarl 68 
                  +La+li+    ++ g l+a++ ++++
  EHT99447.1 342 IMLALLITSFYTSNSGILKAEMFPPQV 368
                 333333333333444445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 3403.55
//
Query:       EHT99448.1  [L=346]
Description: GroES family alcohol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-32  109.5   2.1    5.4e-31  106.7   0.6    2.2  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    7.1e-31  106.9   1.5    1.1e-30  106.3   1.5    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    2.5e-05   23.7   1.4      4e-05   23.0   1.4    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    0.00052   19.4   0.2    0.00087   18.7   0.2    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.002   19.2   0.0     0.0037   18.3   0.0    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0028   18.3   0.1     0.0059   17.3   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
     0.0029   17.3   1.0     0.0045   16.6   1.0    1.2  1  Urocanase        Urocanase Rossmann-like domain
     0.0035   17.1   0.4     0.0051   16.6   0.4    1.2  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
     0.0051   16.4   0.3     0.0081   15.8   0.3    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
  ------ inclusion threshold ------
      0.028   15.1   0.1      0.064   13.9   0.1    1.7  1  Methyltransf_11  Methyltransferase domain
      0.065   13.5   0.3       0.13   12.5   0.3    1.6  1  TrkA_N           TrkA-N domain
       0.12   12.4   1.7       0.23   11.5   1.7    1.4  1  SIS_2            SIS domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.6   3.6e-34   5.4e-31       2     105 ..      26     128 ..      25     132 .. 0.97
   2 ?    1.9   0.0      0.13     2e+02      42      76 ..     218     253 ..     214     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 3.6e-34
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 + v+i+vka+g+C+sD h + g +++  +lp ++GHE++G++e+vg++v+k++ Gd+V+v++++ cg C++C++g++++C+++   g++ +G+faeyv 
  EHT99448.1  26 HGVVIRVKATGVCRSDWHGWVG-HDPDIPLPHVPGHEFAGTIEAVGSAVTKWRPGDNVTVPFVSGCGLCHECHSGNQQVCDHQFQPGFTHWGSFAEYVA 123
                 789*******************.8*************************************************************************** PP

                 ECGGG CS
       ADH_N 101 vpekk 105
                 +++++
  EHT99448.1 124 IQQAD 128
                 99876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
                 EEEEESTT-CS.--TT-EEEE-SEEE-SSSHHHHTT CS
       ADH_N  42 eveevgpevkk.lkvGdrVvvepliscgeCaaCkeg 76 
                 +v++v ++v++  + G +V +++l + ++C +  + 
  EHT99448.1 218 QVSDVAEAVREfTHGGAHVSIDALGHTATCVNAINS 253
                 688999999994556799*9*999999999876655 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   1.5   7.3e-34   1.1e-30       1     127 [.     176     304 ..     176     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 7.3e-34
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.. CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.. 96 
                 gvGl a+++A+alGa+viavd+s+ekl+la++lGa +++n+++  d+ e+++e+t+g g++v+++++G+ at  +a+++l+++Gr v vG++ ge +  
  EHT99448.1 176 GVGLSAIMIANALGANVIAVDISDEKLQLARELGAVAIVNATQVsDVAEAVREFTHG-GAHVSIDALGHTATCVNAINSLRKRGRHVQVGLMAGEHSap 273
                 9******************************************************66.*********************************55555556 PP

                 .EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  97 .fdlrnlllkeksilGsllgslreefkealdl 127
                  +++++++++e+ i+Gs++ +  +++  ++++
  EHT99448.1 274 pIPMARVIANELEIIGSHGMQ-AHRYDVMMNM 304
                 9*******************9.7887766665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.4   2.7e-08     4e-05      32      90 ..     170     227 ..     154     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.7e-08
                  EEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHH CS
  AlaDh_PNT_C  32 lviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavk 90 
                   v G G +Gl+Ai +a++lga+V ++D++ ++l+  ++lga    v + q + +aeav+
   EHT99448.1 170 AVHGCGGVGLSAIMIANALGANVIAVDISDEKLQLARELGAV-AIVNATQVSDVAEAVR 227
                  688**********************************99998.5566777777777766 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   5.8e-07   0.00087      30      87 ..     160     215 ..     152     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.8e-07
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHH CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvslee 87 
                   +gk+ +g+ +++ G+G +G +++ +++a+g++via+d s +k + ++elg+  v + +
    EHT99448.1 160 QGKTSAGQWLAVHGCGGVGLSAIMIANALGANVIAVDISDEKLQLARELGA--VAIVN 215
                   577889999******************************887765555444..44444 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.4e-06    0.0037       1     124 [.     208     334 ..     208     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.4e-06
                   TT-SEEEETT.STTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   lGA  +++ +   d++   ++  ++g  v +d++g +a++ ++++ l+++Gr v++g +  + +  ++p  +++  +  +e + s +   qa++ + 
    EHT99448.1 208 LGAVAIVNATqVSDVAeavREFTHGGAHVSIDALGHTATCVNAINSLRKRGRHVQVGlM--AGEHSAPPIPMARVIANELEIIGS-HG-MQAHRYDV 300
                   7999999999888888888777789**********88888888999*888******944..444555555555555555555553.33.478889** PP

                   HHHHHHHHH---..-EEEEEEGGGHHHHHHHHHS CS
  ADH_zinc_N_2  93 laalieeGklrp..vvdrvfpleeaaeAhryles 124
                   ++++i +Gkl p   ++r+  le+  eA+  + +
    EHT99448.1 301 MMNMIHAGKLCPekLIGRTINLEQSIEALMNMDK 334
                   **********984469************998876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     4e-06    0.0059       5      58 ..     173     226 ..     171     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4e-06
                      T-.TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB CS
  Methyltransf_25   5 Gc.GtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedl 58 
                      Gc G G  ++++a++lg a+v++vDis+e l+ are  + + +n++ v   ae++
       EHT99448.1 173 GCgGVGLSAIMIANALG-ANVIAVDISDEKLQLARELGAVAIVNATQVSDVAEAV 226
                      551569999******98.*****************99865544555555444544 PP

>> Urocanase  Urocanase Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.0     3e-06    0.0045      23     113 ..     161     252 ..     149     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3e-06
                 .T--TT-EEEEE--STTGGGHHHHHHHTT-EEEEEES-HHHHHHHHHTTS-SEE.ES-HHHHHHHHHHHHHCT--EEEEEES-HHHHHHHHH CS
   Urocanase  23 kgdlkgklvvtaGlGgMsgaQplAatiagavalvvevdesriekrleqgyvdev.addldealalikeakkekealsigllgnvvdvleelv 113
                  ++ +g+++   G+Gg + +  + a+  ga +++v++++++++   e g v  v a+++ ++ + ++e ++ +  +si  lg  ++ ++++ 
  EHT99448.1 161 GKTSAGQWLAVHGCGGVGLSAIMIANALGANVIAVDISDEKLQLARELGAVAIVnATQVSDVAEAVREFTHGGAHVSIDALGHTATCVNAIN 252
                 35678**************9999999************************9987367899******************99999888776554 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   3.4e-06    0.0051       8      83 ..     142     220 ..     138     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
                    THHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEE..EESSEEEEETTEE....-HHHHHHHH CS
  ELFV_dehydrog   8 eaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvav..sDssGviydpeGl....dieellelk 83 
                    +a +lG++++++  +   ++++ +g+ +a+ G G vg  a+ ++  lga+v+av  sD +  ++ + G     +    +++ 
     EHT99448.1 142 TAASLGCRFITSFRAVVDQGKTSAGQWLAVHGCGGVGLSAIMIANALGANVIAVdiSDEKLQLARELGAvaivN---ATQVS 220
                    68899999988755555578899****************************99533788877777777663333...33333 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   5.4e-06    0.0081       4      51 ..     170     218 ..     167     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.4e-06
                     EEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT.TS-SS--TTH CS
  UDPG_MGDP_dh_N   4 sviGlGYvGlvtaavlaeighevigvDideekvdklns.gkipiyepgL 51 
                     +v G G vGl   ++ +++g +vi vDi++ek +  ++ g + i++  +
      EHT99448.1 170 AVHGCGGVGLSAIMIANALGANVIAVDISDEKLQLARElGAVAIVNATQ 218
                     789**********999****************99876535666666554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.3e-05     0.064       4      43 ..     173     214 ..     170     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
                      T-T.TSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT- CS
  Methyltransf_11   4 GcG.tGrlaeala.krgarvvgvDlskemlklakekaseegl 43 
                      GcG  G+ a  +a   ga+v++vD+s+e l+la+e +  + +
       EHT99448.1 173 GCGgVGLSAIMIAnALGANVIAVDISDEKLQLARELGAVAIV 214
                      89846777777774455*****************99877765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   8.8e-05      0.13       2      51 ..     170     218 ..     169     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.8e-05
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTS CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatd 51 
                 ++ G+G vG s +   ++ g  +v+++d ++e+++ +re g+ ++v +at+
  EHT99448.1 170 AVHGCGGVGLSAIMIANAlGA-NVIAVDISDEKLQLARELGAVAIV-NATQ 218
                 688**********99999777.6***************99965443.4444 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7   0.00015      0.23      33     133 ..     164     261 ..     160     266 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                 HTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT- CS
       SIS_2  33 enggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrlkpgDvLlviSnsGnnavvveaaeaakergm 131
                 ++g+++ v G+G+  + a+ +a+ +g  +    i +++l l  + +a +  ++ +++ +a+++++      g + + i + G+ a  v+a++  ++rg 
  EHT99448.1 164 SAGQWLAVHGCGGVGLSAIMIANALGANVIAVDISDEKLQLARELGAVAIVNATQVSDVAEAVREF---THGGAHVSIDALGHTATCVNAINSLRKRGR 259
                 6899*************************************7775677777777777777777766...889999**********************97 PP

                 EE CS
       SIS_2 132 kv 133
                  v
  EHT99448.1 260 HV 261
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2927.54
//
Query:       EHT99449.1  [L=131]
Description: AsnC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-15   56.9   0.1    2.4e-15   56.3   0.1    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    1.3e-11   43.9   0.1    1.9e-11   43.3   0.1    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    2.4e-11   43.3   0.7    3.8e-11   42.6   0.7    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0005   19.9   0.1     0.0008   19.3   0.1    1.3  1  MarR            MarR family
     0.0014   18.5   0.0     0.0028   17.6   0.0    1.4  1  HTH_11          HTH domain
  ------ inclusion threshold ------
      0.022   14.8   0.0      0.039   14.0   0.0    1.4  1  HTH_20          Helix-turn-helix domain
      0.064   13.0   0.0       0.13   12.0   0.0    1.5  1  PheRS_DBD1      PheRS DNA binding domain 1
       0.11   12.7   0.0       0.17   12.1   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.11   12.4   0.0       0.23   11.4   0.0    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
       0.12   12.4   0.0       0.35   10.8   0.0    1.7  2  PadR            Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   1.3e-18   2.4e-15       5      56 ..      74     125 ..      70     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.3e-18
                     E-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH CS
  AsnC_trans_reg   5 lepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflre 56 
                     +++++++++++fee++ + p+V++c+ +tG++d+ll+vv+rdl++++ f+++
      EHT99449.1  74 CSQHSEAATRDFEERINANPYVLSCHNITGEADFLLQVVARDLDHYSLFIEK 125
                     56444999***************************************99876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   1.1e-14   1.9e-11       1      44 [.       4      47 ..       4      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.1e-14
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeee 44
                ld++d ++L++Lqk++r s   L++ l++Sp+ ++rrlkrLe+e
  EHT99449.1  4 LDKKDVALLRYLQKDGRVSSLKLSQDLDMSPASTWRRLKRLEDE 47
                79****************************************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.7   2.1e-14   3.8e-11       1      42 []       4      45 ..       4      45 .. 0.99

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 2.1e-14
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+ D ++L+ Lq+d+R s  +L++ + +S++  +rR++rLe
     EHT99449.1  4 LDKKDVALLRYLQKDGRVSSLKLSQDLDMSPASTWRRLKRLE 45
                   8****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   4.5e-07    0.0008       7      58 ..      10      61 ..       5      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.5e-07
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                 +Lr l   g  s  +L   l +s++++ r l+rLe++ +ie ++   +rR+
  EHT99449.1 10 ALLRYLQKDGRVSSLKLSQDLDMSPASTWRRLKRLEDEAFIEGYQAVVNRRK 61
                678888888999999***********************************96 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06    0.0028       5      42 ..      11      47 ..       9      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-06
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeel 42
                +l+ L +++g +s+ +L++ L++S +  +r++k+Le+ 
  EHT99449.1 11 LLRYL-QKDGRVSSLKLSQDLDMSPASTWRRLKRLEDE 47
                67778.*****************************986 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.2e-05     0.039      14      56 ..      10      52 ..       3      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                ++lr+L  ++ ++   l + ld+s+++  ++L+ Le+  ++e+
  EHT99449.1 10 ALLRYLQKDGRVSSLKLSQDLDMSPASTWRRLKRLEDEAFIEG 52
                789**********************************888885 PP

>> PheRS_DBD1  PheRS DNA binding domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.3e-05      0.13       8      30 ..      10      32 ..       5      35 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.3e-05
  PheRS_DBD1  8 qlLqrLekkgevdslelAaelgv 30
                 lL++L+k+g v sl+l++ l +
  EHT99449.1 10 ALLRYLQKDGRVSSLKLSQDLDM 32
                69****************99875 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.6e-05      0.17      19      51 ..      17      49 ..      10      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.6e-05
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTS CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGy 51
                    + + v+  +l++ L+ sp+s    lk+Le++ +
      EHT99449.1 17 KDGRVSSLKLSQDLDMSPASTWRRLKRLEDEAF 49
                    55678999*********************9865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.23      21      40 ..      28      47 ..      27      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                HHHTS-HHHHHHHHHHHHHH CS
       HTH_1 21 eeLglsqpavsrqikrLEee 40
                + L +s+++ +r++krLE+e
  EHT99449.1 28 QDLDMSPASTWRRLKRLEDE 47
                789***************97 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4   2.5e+03      37      51 ..      11      25 ..      10      29 .. 0.79
   2 ?   10.8   0.0    0.0002      0.35      27      60 ..      30      60 ..      23      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
                HHHHHHHTTSEEEEE CS
        PadR 37 aLkrLekeglvesew 51
                +L+ L+k+g v+s +
  EHT99449.1 11 LLRYLQKDGRVSSLK 25
                588999999998865 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0002
                CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-E CS
        PadR 27 lelseGslYpaLkrLekeglveseweesgegppr 60
                l++s++s  + LkrLe+e ++e++++      +r
  EHT99449.1 30 LDMSPASTWRRLKRLEDEAFIEGYQAVV---NRR 60
                678999999***************9875...344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1133.29
//
Query:       EHT99450.1  [L=229]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-15   56.5   0.0    1.6e-14   53.9   0.0    2.2  2  HTH_Tnp_1     Transposase
    1.4e-06   27.9   0.0      0.017   14.9   0.0    2.3  2  HTH_23        Homeodomain-like domain
     0.0034   17.5   0.0       0.66   10.2   0.0    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.054   13.4   0.1       0.68    9.9   0.0    2.3  2  MarR_2        MarR family
      0.084   13.4   0.2        3.4    8.3   0.0    2.6  3  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.9e+03      14      38 ..       9      33 ..       8      37 .. 0.83
   2 !   53.9   0.0   4.6e-18   1.6e-14       3      57 ..      91     145 ..      89     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspn 38
                +++++ +++    +e  rr+g+ + 
  EHT99450.1  9 EALHLHFDENLARVEAGRRLGIPKT 33
                67788889999999999****9875 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 4.6e-18
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspae 57 
                 rr  ++++fK+++V+ sl+pg++v+++Ar+ g+++n L++Wr++yr+g++ +  +
  EHT99450.1  91 RRPNFPRAFKIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRKGLLLPHNS 145
                 6789******************************************999876665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.8e-06     0.017       9      46 ..       9      47 ..       7      48 .. 0.88
   2 !   10.7   0.0   9.7e-05      0.35      11      46 ..     104     139 ..      97     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ +  l + e+ r+Lg+++ Tv+    r+r+ Gl
  EHT99450.1  9 EALHLHFDeNLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                67777776699999*********************9998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                 +   ++ G +v++ Are g++ + + +w++ y ++Gl
  EHT99450.1 104 VEKSLQpGTNVAQLARENGINDNLLFNWRSLY-RKGL 139
                 4445568999**********************.5775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0076        27      11      41 ..      16      47 ..       5      53 .. 0.81
   2 !   10.2   0.0   0.00018      0.66       2      40 ..     100     138 ..      99     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0076
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGi 41
                + + ++ ea r+lgi  +tv ++  r+++ G+
  EHT99450.1 16 DENlARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                45557889************999999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00018
      HTH_28   2 Rleiikllaa.GhsvreaArelgisrrtvyrWikryeegG 40 
                 ++  ++  ++ G +v+++Are gi+   +  W++ y++ G
  EHT99450.1 100 KIALVEKSLQpGTNVAQLARENGINDNLLFNWRSLYRK-G 138
                 5555655565588************************9.5 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019      0.68      10      50 ..       7      47 ..       4      47 .. 0.91
   2 ?    0.7   0.0      0.14     5e+02      18      33 ..     110     123 ..     102     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l+  e  rrlg++k +v  +  r+ +aGL
  EHT99450.1  7 LLEALHLHFDENLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                6888888888889999***********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 TTSEEEHHHHHHHHTS CS
      MarR_2  18 pgrdltvgelarrlgl 33 
                 pg   +v++lar+ g+
  EHT99450.1 110 PG--TNVAQLARENGI 123
                 66..799******998 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058   2.1e+02      25      55 ..      18      48 ..      10      51 .. 0.86
   2 ?    8.3   0.0   0.00094       3.4      14      71 ..     100     154 ..      85     166 .. 0.78
   3 ?   -2.9   0.0       2.9     1e+04      59      71 ..     207     219 ..     196     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.058
  LZ_Tnp_IS481 25 rrtvaqvarelGvslrtaykwlarfraeGld 55
                  + +  ++ r lG+ + t      rfr  Gl 
    EHT99450.1 18 NLARVEAGRRLGIPKTTVCDLFVRFRKAGLS 48
                  5555678999*****************9995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00094
  LZ_Tnp_IS481  14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldrssrPrrvPkat 71 
                   ++ lv++ ++    vaq are G+  +  + w + +r  Gl  ll   s P   P   
    EHT99450.1 100 KIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRK-GL--LLPHNSEPALLPVML 154
                   56799***************************999984.44..455666666666555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
  LZ_Tnp_IS481  59 drssrPrrvPkat 71 
                    r sr   +P+a 
    EHT99450.1 207 KRGSRCSPSPQAH 219
                   5777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1750.02
//
Query:       EHT99451.1  [L=39]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   24.0   0.0    2.9e-05   23.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.9e-05      71     100 ..       2      30 ..       1      31 [. 0.92

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-09
   TnpB_IS66  71 wpkeeeeeaveltaeqlelLleGldlervk 100
                 wp  +++++v+lt++ql++LleG+++++++
  EHT99451.1   2 WPL-TRDGKVHLTPAQLSMLLEGINWKHPQ 30 
                 996.9999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 334.14
//
Query:       EHT99452.1  [L=85]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-06   29.0   0.4    1.3e-06   29.0   0.4    1.6  2  LZ_Tnp_IS66     Transposase C of IS166 homeodomain
     0.0004   20.7   0.9    0.00047   20.5   0.9    1.0  1  Troponin        Troponin
     0.0017   18.2   1.7     0.0041   17.0   0.2    2.3  2  Shugoshin_N     Shugoshin N-terminal coiled-coil region
     0.0038   17.5   3.3     0.0056   17.0   0.9    2.1  2  Csm1_N          Csm1 N-terminal domain
     0.0047   15.5   3.8     0.0048   15.5   3.8    1.0  1  FUSC            Fusaric acid resistance protein family
  ------ inclusion threshold ------
      0.013   15.2   0.5      0.017   14.9   0.5    1.1  1  LXG             LXG domain of WXG superfamily
      0.052   13.3   0.1      0.076   12.8   0.1    1.4  1  Tricho_coat     Trichovirus coat protein
      0.056   13.3   5.7      0.063   13.1   5.7    1.0  1  ERM             Ezrin/radixin/moesin family
      0.061   12.9   1.0      0.071   12.7   1.0    1.2  1  NRBF2           Nuclear receptor-binding factor 2, autophagy 
      0.077   12.8   2.4      0.085   12.7   2.4    1.1  1  USP8_interact   USP8 interacting
       0.11   12.4   0.5       0.12   12.3   0.5    1.0  1  CLP_protease    Clp protease
       0.12   12.5   0.2       0.12   12.5   0.2    2.6  3  DUF1192         Protein of unknown function (DUF1192)
       0.27   11.4   4.1        1.3    9.2   1.0    2.3  2  NYD-SP28_assoc  Sperm tail C-terminal domain
       0.34   11.5   7.7        2.8    8.5   3.8    2.3  2  MerR-DNA-bind   MerR, DNA binding
        0.6   10.8   6.3        5.8    7.6   6.3    2.3  1  SlyX            SlyX


Domain annotation for each model (and alignments):
>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       6.2   7.4e+03      40      40 ..      20      20 ..       8      36 .. 0.61
   2 !   29.0   0.4   1.1e-09   1.3e-06       1      29 [.      46      75 ..      46      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.2
  LZ_Tnp_IS66 40 a 40
                 +
   EHT99452.1 20 Q 20
                 1 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 1.1e-09
  LZ_Tnp_IS66  1 rLeeqlallkrklFGrsSE.ltardpeQle 29
                 rL++ +a+l+r++FG+sSE l+++++ Q +
   EHT99452.1 46 RLKALVAKLQRMQFGKSSEkLREKTARQVC 75
                 79*****************87777777765 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.9     4e-07   0.00047      46     111 ..       9      75 ..       3      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THHHH CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktadekl 111
                 ++ l++l ++ +  i++l+e    + + va  + ei+ lk  v +l+ + f+k + K   kta++  
  EHT99452.1   9 NARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMqFGKSSEKLREKTARQVC 75 
                 479*******************************************9999*************9954 PP

>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1         1   1.2e+03      36      44 ..       8      16 ..       7      17 .. 0.82
   2 !   17.0   0.2   3.4e-06    0.0041       9      35 ..      23      49 ..      19      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1
  Shugoshin_N 36 ENlnLReli 44
                 EN  LR+l+
   EHT99452.1  8 ENARLRALL 16
                 899999976 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.4e-06
  Shugoshin_N  9 NreLAKsNsalslkirelekevseLls 35
                 +r+LA  N +ls+++  +++e+++L++
   EHT99452.1 23 IRQLAEYNRLLSQRVAAYTSEINRLKA 49
                 69***********************85 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.16   1.9e+02      28      47 ..       8      27 ..       7      29 .. 0.81
   2 !   17.0   0.9   4.7e-06    0.0056      22      57 ..      23      58 ..      20      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.16
      Csm1_N 28 ENsvLsqkletkdqeiesLk 47
                EN  L+  l+ +++ i +L 
  EHT99452.1  8 ENARLRALLQEQQTTIRQLA 27
                89999999999999998885 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.7e-06
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekv 57
                + +l + N++Lsq++  ++ ei++Lk+ +a+l+   
  EHT99452.1 23 IRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQ 58
                6677788************************98643 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   3.8     4e-06    0.0048     212     289 ..       4      84 ..       1      85 [] 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4e-06
        FUSC 212 prirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlral 289
                 +  ++++++lr+ll+++++ +++l ++ rll +  a+ + +   l+al+a+l+++    +++++ e+++ ++ + ++r+ al
  EHT99452.1   4 S-PPDENARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMqfgkSSEKLREKTARQVCEAEERIGAL 84 
                 4.4899***********************************999**********9888866677777777777777777665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   1.4e-05     0.017     152     193 ..      17      58 ..       7      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti++l ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99452.1  17 QEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQ 58 
                 6779**********************************9984 PP

>> Tricho_coat  Trichovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.3e-05     0.076      80     111 ..      46      77 ..      25      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-05
  Tricho_coat  80 dlsevvnelktlaatssenslneatlRklCep 111
                   l+ +v +l+ ++   s ++l+e t R++Ce+
   EHT99452.1  46 RLKALVAKLQRMQFGKSSEKLREKTARQVCEA 77 
                  4899***************************7 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   5.7   5.3e-05     0.063      20      94 ..       8      84 ..       5      85 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-05
         ERM 20 eaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarl 94
                e ++ ++ L+e++ t+++Lae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++ eae+++  l
  EHT99452.1  8 ENARLRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQfgKSSEKLREKTARQVCEAEERIGAL 84
                67788889**********************************9999998873355777789**********998765 PP

>> NRBF2  Nuclear receptor-binding factor 2, autophagy regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   5.9e-05     0.071      80     126 ..      15      61 ..       4      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
       NRBF2  80 kleeqatkiadLkrlvelLlaenerLrkenkqLkaekaRLqkeplek 126
                  l eq+t+i++L  +  lL +   +  +e ++Lka  a+Lq+    k
  EHT99452.1  15 LLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQFGK 61 
                 589*************************************9977655 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.4   7.1e-05     0.085       2      48 ..      12      58 ..      11      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.1e-05
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn 48
                   Lr+l+q+qq++i +l +  +  +q+++    e++ lk++++ l+ ++
     EHT99452.1 12 LRALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQ 58
                   9***************************************9988665 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5    0.0001      0.12     101     162 ..      13      74 ..       8      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                   EEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTE CS
  CLP_protease 101 RfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdt 162
                   R+ l++ ++ i q +   +  ++ ++ ++ e++++k+ ++++   + g+s ek+++++ r  
    EHT99452.1  13 RALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQRMQFGKSSEKLREKTARQV 74 
                   8889999999999999999999************************************9975 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.3   1.6e+03      36      47 ..       9      20 ..       7      28 .. 0.69
   2 ?   12.5   0.2   9.9e-05      0.12      25      45 ..      33      53 ..      31      58 .. 0.90
   3 ?   -0.2   0.1      0.91   1.1e+03      24      33 ..      76      85 .]      64      85 .] 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.3
     DUF1192 36 IaRleaaiakkk 47
                 aRl+a +++ +
  EHT99452.1  9 NARLRALLQEQQ 20
                578888777665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.9e-05
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+ ++EI Rl+a +ak
  EHT99452.1 33 LSQRVAAYTSEINRLKALVAK 53
                889**************9987 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.91
     DUF1192 24 ELeerIalLe 33
                E eerI +L+
  EHT99452.1 76 EAEERIGALQ 85
                6689998886 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.083        99      48      58 ..       8      18 ..       6      19 .. 0.90
   2 ?    9.2   1.0    0.0011       1.3      21      54 ..      22      56 ..      20      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.083
  NYD-SP28_assoc 48 qNeeLrnlLkq 58
                    +N+ Lr lL++
      EHT99452.1  8 ENARLRALLQE 18
                    8********97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
  NYD-SP28_assoc 21 lekaLekYhevLteR.aklieetesLekqNeeLrn 54
                      ++L +Y+++L +R a++ +e+  L++  ++L++
      EHT99452.1 22 TIRQLAEYNRLLSQRvAAYTSEINRLKALVAKLQR 56
                    67899**********66677899999999999986 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8    0.0024       2.8      21      64 ..      13      56 ..       8      57 .. 0.87
   2 ?    4.7   0.1     0.037        44      32      56 ..      61      85 .]      58      85 .] 0.90

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0024
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   ++ ++ ++ll +++a     i++L+al a L++
     EHT99452.1 13 RALLQEQQTTIRQLAEYNRLLSQRVAAYTSEINRLKALVAKLQR 56
                   889977666788888888************************97 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.037
                   TBHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLq 56
                   ++++++r+ +ar++ e eeri +Lq
     EHT99452.1 61 KSSEKLREKTARQVCEAEERIGALQ 85
                   6789999**************9997 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.3    0.0048       5.8      22      53 ..      12      43 ..       7      85 .] 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0048
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i +l +  rll +r+++  ++
  EHT99452.1 12 LRALLQEQQTTIRQLAEYNRLLSQRVAAYTSE 43
                7778899*****************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1346  (0.0750739); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 677.32
//
Query:       EHT99453.1  [L=426]
Description: hypothetical protein CKS_1640 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3180.98
//
Query:       EHT99454.1  [L=198]
Description: hypothetical protein CKS_1639 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-44  150.6   0.0    6.2e-44  150.5   0.0    1.0  1  DUF1173   Protein of unknown function (DUF1173)
     0.0064   15.3   0.1      0.008   14.9   0.1    1.1  1  DUF790    Protein of unknown function (DUF790)


Domain annotation for each model (and alignments):
>> DUF1173  Protein of unknown function (DUF1173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   6.9e-48   6.2e-44     218     385 ..       3     186 ..       1     187 [. 0.95

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 6.9e-48
     DUF1173 218 lvvgevkeiaaarsgkklvikhlpdfp.llldeallkrlq..rrFerelelwranekvhLiviatfeaskagia............eveevaLmlvtee 301
                  v++ +   a+ar   +l++  + +fp l+l+e+++ rl   r+F rel  wr+++kv  +via++e ++++              +v +vaLm+v+++
  EHT99454.1   3 SVLAGWNAAAEARLQTTLPLGLFSGFPdLVLPEDVRLRLRleRSFGRELGDWRRGMKV--VVIAETEPPETTFRhtdgrnrpsscsTVIDVALMTVSPR 99 
                 5799*****************************987654433****************..******9999999899999******************** PP

     DUF1173 302 wiPfesvdekllleaLvaekrrfvKgLrynlpeeaplasvvLtdv.geepvalevvpadadeelarklekliaadaelga...WiWrv 385
                 +iP++s +e +++++L++ekr+f+K+Lry+  ee++++++vL+dv g +++++ev++++++e+l+rk++k++++d+e+g+   W W++
  EHT99454.1 100 FIPLDSGYEGMVEDRLWQEKRAFIKPLRYDG-EEDVFPDFVLKDVpGVDALPMEVFGMNTPEYLQRKQAKTAHYDREYGPghwWCWNA 186
                 *******************************.99**********************************************99999985 PP

>> DUF790  Protein of unknown function (DUF790)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     9e-07     0.008     305     344 ..     132     172 ..     112     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9e-07
      DUF790 305 svmiPDFale.ekdgrrvyleIvGfwtpeylkkKleklrka 344
                 + ++PDF l+  ++   + +e++G  tpeyl++K +k ++ 
  EHT99454.1 132 EDVFPDFVLKdVPGVDALPMEVFGMNTPEYLQRKQAKTAHY 172
                 5578*****9556666677***************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1458.55
//
Query:       EHT99455.1  [L=191]
Description: hypothetical protein CKS_1636 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.057   13.0   2.4      0.082   12.5   2.4    1.2  1  BB_PF            Beta barrel Pore-forming domain
      0.094   12.7   0.1       0.21   11.6   0.0    1.6  2  Phage_sheath_1C  Phage tail sheath C-terminal domain


Domain annotation for each model (and alignments):
>> BB_PF  Beta barrel Pore-forming domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.4   9.1e-06     0.082      56     135 ..      71     151 ..      68     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.1e-06
       BB_PF  56 iktvtssskqthtvtkkkGfskkftaskevkasvgkgikacesslevttkfnyteeigsetetektieL.gagtyyiYQtv 135
                 i++ +ss+++t++ + ++Gf+ +++ + +++as++ + + + +  +++ + + tee++++t+ +++ ++  + + ++YQ +
  EHT99455.1  71 IDNTHSSATTTYEKSLTTGFTFTSSQTFSAEASFEASAEVVKAGVKIGFSISFTEEWSKSTTDTFSFSVgPNKKAFTYQGY 151
                 788899*********************999****9999999999999999999****************777778888865 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.21      46     104 .]      56     124 ..      37     124 .. 0.91
   2 ?   -2.5   0.0      0.58   5.2e+03      87      98 ..     165     176 ..     153     181 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                      HHHHHHHHHHHHTTSB-S--STTSEEEEC..........SSSSTTEEEEEEEE-BSSSSS-EEEEEEEE CS
  Phage_sheath_1C  46 salnaylkelqregaienfdnksdlevea..........kntdkdrlvvkinvkpvnsmeklyftievt 104
                      +a+  +  +lq++g+i+n  + ++++ e           ++t++ +   ++++++v++  k+ f i +t
       EHT99455.1  56 EAIVLFAPNLQNIGVIDNTHSSATTTYEKslttgftftsSQTFSAEASFEASAEVVKAGVKIGFSISFT 124
                      67888899*************9999999999*******************************9999875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.58
                      EE-BSSSSS-EE CS
  Phage_sheath_1C  87 nvkpvnsmekly 98 
                      ++++vns+ ++ 
       EHT99455.1 165 SFAYVNSVARFV 176
                      455666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1397.39
//
Query:       EHT99456.1  [L=214]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-23   82.9   1.9    5.6e-23   81.7   1.9    1.6  1  Resolvase  Resolvase, N terminal domain
    2.6e-07   30.6   0.3    7.1e-07   29.2   0.1    1.9  2  HTH_7      Helix-turn-helix domain of resolvase
     0.0035   17.1   0.2     0.0084   15.9   0.2    1.7  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.078   13.0   0.3       0.32   11.0   0.2    2.1  2  HTH_35     Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   1.9   1.3e-26   5.6e-23       2     146 .]       5     157 ..       4     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.3e-26
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvs 99 
                  +Y+RvSt+eq+  l rQ   ++ +   +g+ ++ ++++k +SGa+++Rp+l+r++a+l++  g+v+v ek+dR++R  + ++ +l+  +++kg++l +
  EHT99456.1   5 RIYLRVSTDEQE--LTRQNSIIEDAR-GRGFYVAGVYKEK-ASGARADRPELQRMIADLQP--GEVVVAEKIDRISRLpLNEAEQLIGSIKAKGAKLAI 97 
                 68**********..****99999998.77799999*****.********************..********************************9987 PP

                 SS..........SS-......---HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 100 ldeg........idt......stpmgrlllqilaalaeferelirertkeglaaakakGkk 146
                             +         ++ + +ll++    a+ + e +rer+++g++ aka+Gk+
  EHT99456.1  98 PGIVdlselavsQ-DgvarivLESVQDMLLKVALQTARDDYETRRERQRQGVELAKASGKY 157
                 6531133443331.0344444455566688888888***********************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         2   9.2e+03      25      31 ..       1       7 [.       1       7 [. 0.80
   2 !   29.2   0.1   1.6e-10   7.1e-07       1      43 [.     159     199 ..     159     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
                TTTSSSS CS
       HTH_7 25 skIAkev 31
                ++IA+++
  EHT99456.1  1 MQIARIY 7 
                5999986 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 1.6e-10
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--SS- CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYRyla 43 
                 GR+s  + +  +r+++L+e+G++i+ +A   ++s+s+v+R++a
  EHT99456.1 159 GRRSETKTH--ERIIALRESGMTIARTATLAGCSVSQVKRIWA 199
                 899999999..******************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.9e-06    0.0084       7      37 ..     167     197 ..     161     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-06
      HTH_23   7 RlrillllaeGlsvreIAreLgvsrrTvyrw 37 
                 + ri+ l   G+++++ A++ g+s ++v r+
  EHT99456.1 167 HERIIALRESGMTIARTATLAGCSVSQVKRI 197
                 5689999999*******************97 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.81   3.6e+03      42      52 ..      61      71 ..      52      74 .. 0.81
   2 ?   11.0   0.2   7.2e-05      0.32       8      40 ..     170     202 ..     164     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.81
      HTH_35 42 kgEalIAeaLg 52
                 gE ++Ae ++
  EHT99456.1 61 PGEVVVAEKID 71
                69999999886 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.2e-05
      HTH_35   8 iAaLrkrgttLaalsreaglssstlsnaltrpw 40 
                 i aLr+ g+t+a  +  ag s s+++++++ ++
  EHT99456.1 170 IIALRESGMTIARTATLAGCSVSQVKRIWAMHN 202
                 557*************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1485.89
//
Query:       EHT99457.1  [L=80]
Description: hypothetical protein CKS_1634 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 590.28
//
Query:       EHT99458.1  [L=45]
Description: hypothetical protein CKS_1633 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 378.94
//
Query:       EHT99459.1  [L=39]
Description: hypothetical protein CKS_1632 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 352.32
//
Query:       EHT99460.1  [L=646]
Description: secreted effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-36  125.0   0.0    6.9e-36  123.5   0.0    1.7  1  SopA_C          SopA-like catalytic domain
    3.3e-06   26.6   2.8    0.00092   18.8   0.1    3.2  3  Pentapeptide    Pentapeptide repeats (8 copies)
    0.00042   20.4   0.6     0.0022   18.1   0.6    2.3  1  Pentapeptide_4  Pentapeptide repeats (9 copies)
     0.0014   19.1   0.7     0.0014   19.1   0.7    2.0  2  SopA            SopA-like central domain
  ------ inclusion threshold ------
      0.013   15.7   6.4       0.28   11.4   7.0    2.8  2  Pentapeptide_3  Pentapeptide repeats (9 copies)
      0.015   15.2   0.4       0.04   13.9   0.1    1.9  2  PI_PP_C         Phosphoinositide phosphatase C-terminal domai


Domain annotation for each model (and alignments):
>> SopA_C  SopA-like catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   2.3e-39   6.9e-36      15     168 .]     494     646 .]     488     646 .] 0.95

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 2.3e-39
                 S--TTSCHH...........HHH.HHHHHGGGSCCSHHHHHHHHTT-TTS-HHHHHHHHHHHHHHHHHHCSTTTTTBSSB--HHHHHHHHHHHHHHHHH CS
      SopA_C  15 tvklvddekqllmhglwanrvsr.ldsifdplldeGfyarllslallvdaspakraevlfclaalfakyassalfGteedspyalrslaealldkacel 112
                 ++kl+  e ql ++ ++ + + r  ds  +++l+  +y+++ls++ l  +  +  +++l+ la++f+ky+ss++fGte++sp+ lr +a al+ ka el
  EHT99460.1 494 ELKLIGTEDQLKLNNIFEKVLTRpNDSAKETMLKSDHYEEILSVFNLDSTDEKITSQTLLSLATVFSKYSSSSVFGTENESPQVLRDYAYALMSKANEL 592
                 58*****************999945789999***************9888888899******************************************* PP

                 -GGGSS-HHHHHHHHHHHSSSSSSHSTTHHHHHHHHHHHHHHSHHHHTTTS-GGG- CS
      SopA_C 113 ssaiahaaedftvwkdallGlqGeatcaavvademlryarkyfpevlksvlplewa 168
                 ++ +     +f  wkd+llGl+ ++tc+av+++ m  +a+  f ev+++++p  wa
  EHT99460.1 593 NPDVT--GGNFNDWKDRLLGLNNAFTCTAVLSSIMIEHAKDNFNEVISQIIPPVWA 646
                 ***96..569******************************************9996 PP

>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0021       6.2      13      31 ..     117     135 ..     116     139 .. 0.50
   2 !   18.8   0.1   3.1e-07   0.00092       8      33 ..     146     171 ..     145     175 .. 0.71
   3 ?   -2.6   0.0       1.5   4.5e+03      29      35 ..     184     190 ..     179     192 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
                   CEECCCESEEECT-B-TT- CS
  Pentapeptide  13 LsganlsgAnLtgAnlsgA 31 
                   Ls+ +l+g++++++n s++
    EHT99460.1 117 LSDKDLRGCTFSNSNTSDC 135
                   5555555555555554444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.1e-07
                   -CCSCCEECCCESEEECT-B-TT-EE CS
  Pentapeptide   8 LsganLsganlsgAnLtgAnlsgAdL 33 
                   +sg+nL+g++ls  ++++A++s++ +
    EHT99460.1 146 FSGSNLNGVDLSSVSFDHADFSKSSM 171
                   77888888888888888888877666 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.5
                   TT-EECC CS
  Pentapeptide  29 sgAdLsg 35 
                   sgA+L g
    EHT99460.1 184 SGAKLDG 190
                   3333333 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   7.4e-07    0.0022      22      67 ..     121     175 ..     107     193 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.4e-07
  Pentapeptide_4  22 rlrdcnFtecrl........snvn.FdecnlsdvdfaevdlkrasFsgcnlknvn 67 
                     +lr+c+F++++           vn F+ +nl+ vd++ v++ +a Fs +   +++
      EHT99460.1 121 DLRGCTFSNSNTsdcwlesqRKVNsFSGSNLNGVDLSSVSFDHADFSKSSMVETK 175
                     5666666666665555455522325777777777777777777777777666554 PP

>> SopA  SopA-like central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.7   4.7e-07    0.0014       2     124 ..     234     370 ..     233     373 .. 0.68
   2 ?   -3.4   0.1       4.3   1.3e+04      78      95 ..     623     641 ..     621     642 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.7e-07
                 HHHHHHHHHHHH....---HHHHGGGHHHHHHHHTSTTTTC-HHHHHHHHH.HHHHHHH---HHHHHH....THHHHHHH......HHHTTTHHHHTHH CS
        SopA   2 KvvllrklvksL....klteislksvaesllkilshaPYidepliaewlqe.veerffaafDimrqqr....vlevllDt......Fdrnkelmvkhsa 85 
                 K  l+ ++v+s+      ++ ++ + ++ l +i  +  Y+++  i+++ ++ v+++ ++a D +   +     l + + t          ke ++++++
  EHT99460.1 234 KTNLMAQIVESIerngIDINSAVFPRKSFLNNIGLKDFYMNNEKIKSFAEKlVKSELVDANDKVILDKlspeALSLCIKTisqtknHADLKEYLIDNNG 332
                 667788888888432211222333334445555556678888888888876467888888884444441244555566666666655666899****** PP

                 HHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHSTTTGGGT CS
        SopA  86 lFiqviaqaltavdtdatkqkakaLYeeylaedrvspyi 124
                  Fiq++  +    +   ++++a+ LY+ yl+ d+v  y 
  EHT99460.1 333 SFIQLMVVCNNNYN-LKVQNQARSLYKTYLNIDEVKTYT 370
                 *****999988777.88999**************98886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
                 THHHHTH.HHHHHHHHHHH CS
        SopA  78 elmvkhs.alFiqviaqal 95 
                  +m++h    F+ vi q++
  EHT99460.1 623 SIMIEHAkDNFNEVISQII 641
                 4677765258999999986 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   7.0   9.4e-05      0.28       7      47 ..     118     169 ..     116     170 .. 0.89
   2 ?   10.3   1.0    0.0002      0.61       3      39 ..     153     189 ..     146     196 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.4e-05
  Pentapeptide_3   7 sgaadFrgatFsgaas.............FsnadFgsadFsgarFtgdvdFsga 47 
                     s+  d+rg+tFs++ +             Fs+++++++d+s + F+  +dFs +
      EHT99460.1 118 SDK-DLRGCTFSNSNTsdcwlesqrkvnsFSGSNLNGVDLSSVSFD-HADFSKS 169
                     677.99********725799999999999****************9.****987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
  Pentapeptide_3   3 ganFsgaadFrgatFsgaasFsnadF..gsadFsgarFt 39 
                     g+ +s   +F++a Fs++ s+ ++    +sa+ sga  +
      EHT99460.1 153 GVDLSSV-SFDHADFSKS-SMVETKViaNSANYSGAKLD 189
                     2333333.5555555555.55555555555555555555 PP

>> PI_PP_C  Phosphoinositide phosphatase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.4     1e+04      50      78 ..      76     104 ..      68     106 .. 0.69
   2 ?   13.9   0.1   1.3e-05      0.04      60     109 ..     501     550 ..     496     566 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.4
                 HHCSS---TTHHHHHHHHHHHHHHTS-S- CS
     PI_PP_C  50 ellqdkksgkdnvlrlakIfeevlerPes 78 
                  + ++k+s ++++l++  + +e l+rP+ 
  EHT99460.1  76 RISSNKESCNSSSLNINRLTNEGLSRPKV 104
                 34446777777788888888888888875 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHTS-S--TTS-HHHHHHHHHHHCTTS--SS---HHHH CS
     PI_PP_C  60 dnvlrlakIfeevlerPesdssRtkatqsvYdrireLlkseepeetleel 109
                 +  l+l +Ife+vl rP+++ + t+   + Y++i++ ++  + +e++  +
  EHT99460.1 501 EDQLKLNNIFEKVLTRPNDSAKETMLKSDHYEEILSVFNLDSTDEKITSQ 550
                 566789********************************988666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4510.55
//
Query:       EHT99461.1  [L=120]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-12   47.3   1.8    2.1e-12   47.0   1.8    1.2  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   1.8   1.1e-16   2.1e-12      71     142 ..      23      93 ..      10      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.1e-16
       DDE_3  71 lletalqakkivlilDnasiHkseslrelveeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 l+ t+++ak+i li+Dn  iHks++  +++++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99461.1  23 LKATYRRAKTITLIVDNYIIHKSRETLRWLKA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 93 
                 6678888889*********************9.9*****************************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 944.29
//
Query:       EHT99462.1  [L=343]
Description: translocated effector protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-25   89.7   5.2    2.2e-25   89.4   5.2    1.1  1  Sif           Sif protein
    2.1e-21   76.2   8.2      5e-21   75.0   8.2    1.6  1  IpaB_EvcA     IpaB/EvcA family
  ------ inclusion threshold ------
      0.063   13.2   5.0       0.14   12.1   0.7    2.4  2  Glyoxalase_2  Glyoxalase-like domain
      0.076   13.0   2.4       0.13   12.3   0.1    2.5  3  MA3           MA3 domain


Domain annotation for each model (and alignments):
>> Sif  Sif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   5.2   4.9e-29   2.2e-25       1     303 [.       1     319 [.       1     327 [. 0.81

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 4.9e-29
         Sif   1 mpitigngylkseil...itppkktreawwkvlwerlkdfffstgkakadsylhemlfadspptrerladiffelkalacashkdrfqvynpheddati 96 
                 m i+ g  yl + i    i+    ++ +    +we++kdfff+tg   a  +l e+    +  t   + diff lkal  ++ k+rf  +n  +     
  EHT99462.1   1 MSISFGSSYLTASISkdrINEMLISHTPPHMTIWEKIKDFFFTTGEREALDCLFELCNPTPDLTSSEIEDIFFRLKALCSPAYKERF-CHNHFDSSYKG 98 
                 667777778777764222555556667777899***********************9999999************************.58988888899 PP

         Sif  97 ifrildeneedellritqstdtfsckimgkvyflvkd.kpgilksy....pqmtltinkrys....eivdsslpstlclklagapl...lsvpldniek 183
                  ++i den++ ++l +  + ++ +++i+gk+++  k+  pgi+k +    p++++t +k  s    e +  +      l   ++ l   ++v  d+i +
  EHT99462.1  99 RLHIQDENGN-DILYVEINREVCNYNILGKSFIFEKNiTPGIVKDHetsiPDLSITHKKINSkksfESIAWMKDNIYQLSYKNNNLeldFTVFYDDIFN 196
                 9*****9985.7899999*************97776648****966444489988866544411125555555555555544443322368999***** PP

         Sif 184 ylyselrkgnldewkaqekvtylaakirsgiektirilkhanisestqqra.fletmsmcglksvetspppthipivkiveevlladkkfkaflvtda. 280
                 ++ s  +   +  w+ +ek ty+++ i+  i++ + + k+ n+s+   +   f +     g  +v+ +   +   i++ v   l+ ++ f+ f+ ++a 
  EHT99462.1 197 HITSFNKGDHFYLWREEEKETYISSIINKEIDNQLST-KKINLSKNYYKDYiFNRLKNELGTYNVKLNSKSAQSSIKHAVLTSLMRNRSFNEFIRENAn 294
                 ****9999999***********************988.6789998876665055566789*********************************976551 PP

         Sif 281 ..stsqsllaeiieaisdkvfralf 303
                   ++++ + +++++a+s+++f+++f
  EHT99462.1 295 dmNIKNIITTDLVNALSNQIFEDMF 319
                 116788999***************9 PP

>> IpaB_EvcA  IpaB/EvcA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   8.2   1.1e-24     5e-21       3     141 ..     180     321 ..     178     329 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.1e-24
   IpaB_EvcA   3 kfivkvsitkirdsvldkvkdsniGdqlfdWksdekksyvssvvnrsidklaiensvvltddlkkn.ifkavekd...fpdikldekaaqssishlaln 97 
                 +   +++ t   d +++++   n Gd+++ W+++ek++y+ss++n+ id+    +  +l+++  k+ if+ +  +   + ++kl+ k+aqssi+h  l 
  EHT99462.1 180 NNNLELDFTVFYDDIFNHITSFNKGDHFYLWREEEKETYISSIINKEIDNQLSTKKINLSKNYYKDyIFNRLKNElgtY-NVKLNSKSAQSSIKHAVLT 277
                 55666777888899**********************************************99866549**998863325.9****************** PP

   IpaB_EvcA  98 evassslrkkkldrlsedmdlkndqtkdlvnlvsdsvydkifne 141
                  +     ++  + + ++dm++kn  t dlvn +s+++++ +f +
  EHT99462.1 278 SLMRNRSFNEFIRENANDMNIKNIITTDLVNALSNQIFEDMFID 321
                 ***************************************99965 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.025   1.1e+02      46      85 ..     163     207 ..     126     224 .. 0.70
   2 ?   12.1   0.7   3.1e-05      0.14       7      48 ..     232     273 ..     227     323 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.025
                   HHHHH----...---S--SS-EEEEEE..S-HHHHHHHH..GGGS CS
  Glyoxalase_2  46 lkelinlde...siaeqsnnfeLyFev..edvdaflqklkeaeni 85 
                   ++++  +++   +  ++ nn+eL F v  +d+ + +  +++ ++ 
    EHT99462.1 163 FESIAWMKDniyQLSYKNNNLELDFTVfyDDIFNHITSFNKGDHF 207
                   555544433112566699999*99986557888888888776665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.1e-05
                   EES-HHHHHHHHHHTT---EEEE-SSE.EEETTS-EEEEHHHH CS
  Glyoxalase_2   7 vvkdieeskkFYedvlelkikldfGen.vsfetgfalkedlke 48 
                     k+i+ sk++Y+d +  ++k ++G++ v+ ++    ++ +k+
    EHT99462.1 232 STKKINLSKNYYKDYIFNRLKNELGTYnVKLNSKS-AQSSIKH 273
                   5799*********************9735555543.3433333 PP

>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.61   2.7e+03      17      40 ..      67      90 ..      63     134 .. 0.73
   2 ?   -2.3   0.1      0.94   4.2e+03      50      72 ..     213     235 ..     206     247 .. 0.68
   3 ?   12.3   0.1   2.9e-05      0.13      27      99 ..     261     332 ..     260     335 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.61
                SHHHHHHHHHHTT--TTHHHHHHH CS
         MA3 17 dyeeavsklekLklpkqeheivki 40
                ++e+ + +l+ L +p +++ +++ 
  EHT99462.1 67 EIEDIFFRLKALCSPAYKERFCHN 90
                577788888888888888888764 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.94
                 SS--HHHHHHHHHHHCC-HHHHH CS
         MA3  50 ktyneyygllleklceknlilkk 72 
                 ++++ y++ +++k ++ +l +kk
  EHT99462.1 213 EEKETYISSIINKEIDNQLSTKK 235
                 67778888888888866665554 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 2.9e-05
                 HTT--TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH...HHHHH CS
         MA3  27 kLklpkqeheivkillecaleesktyneyygllleklceknlilkkqfekgfwdvlesledleldipeairnl 99 
                 kL++++ +++i + +l++++   +++ne++ + ++++  kn i+++  + + ++++e++   e+++p+ + ++
  EHT99462.1 261 KLNSKSAQSSIKHAVLTSLMRN-RSFNEFIRENANDMNIKNIITTDLVNALSNQIFEDMFIDEMSLPREWIYI 332
                 8999******************.***********************************999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2732.46
//
Query:       EHT99463.1  [L=100]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-11   43.5   0.2    3.9e-11   43.1   0.2    1.2  1  HTH_Tnp_1     Transposase
      0.002   18.6   0.1     0.0032   18.0   0.1    1.4  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
     0.0045   17.1   0.0     0.0075   16.4   0.0    1.3  1  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   15.0   0.0      0.034   14.2   0.0    1.5  1  HTH_29        Winged helix-turn helix
       0.02   14.8   0.0      0.054   13.4   0.0    1.7  2  MarR          MarR family
      0.037   14.3   1.1      0.065   13.6   1.1    1.5  1  TSC22         TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.2   1.3e-14   3.9e-11       3      74 ..       2      74 ..       1      75 [. 0.95

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.3e-14
   HTH_Tnp_1  3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyr.egeeaspaefeltaleeenrelkrel 74
                ++r +s+efK +  ++++++  +v++ A  ++v  ++  +W++q r e ++  p  + +t+++ e+relk+ l
  EHT99463.1  2 KKRNFSAEFKRESAQLVVDQNCTVADAASAMDVGLSTMTRWVKQLRdERRGNIPKASPITPEQIEIRELKKKL 74
                45*********************************************9999999999*************976 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.1e-06    0.0032      20      53 ..      17      50 ..      13      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.1e-06
  LZ_Tnp_IS481 20 rvvedrrtvaqvarelGvslrtaykwlarfraeG 53
                   vv+++ tva++a ++ v l t  +w+ ++r e 
    EHT99463.1 17 LVVDQNCTVADAASAMDVGLSTMTRWVKQLRDER 50
                  59*****************************984 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06    0.0075       1      39 [.      10      49 ..      10      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
      HTH_28  1 qRleiikllaaGh.svreaArelgisrrtvyrWikryeeg 39
                +++e  +l+ +++ +v++aA ++ ++ +t  rW+k+++ +
  EHT99463.1 10 FKRESAQLVVDQNcTVADAASAMDVGLSTMTRWVKQLRDE 49
                6889999*****************************9965 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.034       9      40 ..      20      50 ..      14      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
      HTH_29  9 aeGvstvsqiAkllglsrrtvyrwlkrfeegG 40
                ++ + tv+++A ++++  +t  rw+k  + ++
  EHT99463.1 20 DQNC-TVADAASAMDVGLSTMTRWVKQLRDER 50
                5556.9********************987765 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-05     0.054      16      42 ..      21      47 ..      16      52 .. 0.91
   2 ?   -2.3   0.0       1.4   4.3e+03      17      28 ..      64      75 ..      61      76 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                TTEEHHHHHHHHTS-HHHHHHHHHHHH CS
        MarR 16 gplsvseLakklgvskstvtrvldrLe 42
                ++++v++ a+++ v  st+tr++++L 
  EHT99463.1 21 QNCTVADAASAMDVGLSTMTRWVKQLR 47
                68999999*****************95 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
                TEEHHHHHHHHT CS
        MarR 17 plsvseLakklg 28
                ++ + eL kkl+
  EHT99463.1 64 QIEIRELKKKLQ 75
                567788888876 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.1   2.2e-05     0.065      22      44 ..      66      88 ..      63      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
       TSC22 22 kIkeLeernseleeENslLkala 44
                +I+eL ++ +++e EN++Lk+  
  EHT99463.1 66 EIRELKKKLQRIEIENEILKKAT 88
                79******************764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 794.95
//
Query:       EHT99464.1  [L=796]
Description: type III restriction enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-18   67.1   0.0      3e-18   66.4   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
    1.5e-06   28.1   0.0    2.9e-06   27.2   0.0    1.4  1  DEAD           DEAD/DEAH box helicase
    1.8e-06   28.3   0.0    4.2e-06   27.1   0.0    1.6  1  Helicase_C     Helicase conserved C-terminal domain
      5e-05   23.4   0.0    0.00015   21.8   0.0    1.7  1  DNA_primase_S  DNA primase small subunit
    0.00011   21.0   0.0    0.00024   20.0   0.0    1.4  1  SNF2_N         SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.045   13.4   0.0    1.8  2  SWI2_SNF2      SWI2/SNF2 ATPase


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0     1e-21     3e-18       3     170 ..     423     564 ..     421     565 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1e-21
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 +lr+ Q +a+ +ll      r+  g++ ++T  GKT++aa++i+r +      ++l+lv+r++ll+q++e+++ fl++ +    +++ g k+k+     
  EHT99464.1 423 KLRPDQDTAVSELL------RHDCGVLCAPTAFGKTVTAAAAIARRKV-----NTLVLVHRTELLKQWQERLRLFLQTSN--DIGVIGGGKNKS----- 503
                 68899999999997......788999*****************99887.....8***********************986..455666666666..... PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS-S CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATpe 170
                    +i ++  qs++++       + + l +++  ii+DE+H++ga +s+ +il+  ++ ++lglTATp 
  EHT99464.1 504 -GGDIDIAVMQSISRHG------EVDPLVKNYGQIIVDECHHIGA-ASFDAILKEANARYVLGLTATPV 564
                 .5888888889999999......7788999999************.**********************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   9.8e-10   2.9e-06       2     169 ..     426     563 ..     425     567 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 9.8e-10
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 + Q+ a+ ++l+ +  +++a+T+ GKT  ++ ++         +++  +l+++  +eL +q  ++l+ f+++ +  +  +igg +  +   ++d  v  
  EHT99464.1 426 PDQDTAVSELLRHDCGVLCAPTAFGKTVTAAAAIA--------RRKVNTLVLVHRTELLKQWQERLRLFLQTSN-DI-GVIGGGKN-KSGGDIDIAVMQ 513
                 789999*****888889************999999........677889**********************733.33.34666554.444555445555 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                  ++ +g +d l       +++   +++DE++ +   +f   +++  ++             v+ l+AT+
  EHT99464.1 514 SISRHGEVDPL-------VKNYGQIIVDECHHIGAASFDAILKEANARY------------VLGLTATP 563
                 55555555554.......5688899************999999965555............77777776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.4e-09   4.2e-06      15     109 ..     640     738 ..     627     740 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.4e-09
                 TTSEEEEEESSHHHHHH..HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEES.GGGTSSSTSTTESEEEESSSSSSHHHHHHHHT CS
  Helicase_C  15 eggkilifvntidrlek..vklllekk..gikvavlhgelpqnereeileqfn...kgesdvLiat.dvaerGidipkvnlVinfdlprnvtsyiqriG 105
                 +g+k+l+ ++++d+l++     l      +++  vlhg+l++++r   +++ n    +  ++L+at + +++G d p ++++i   +     +++q +G
  EHT99464.1 640 QGRKVLVLTERTDHLDDiaS-EL---AllKLSPFVLHGRLSKKKRTTLISELNalpPDAPRILLATgKLVGEGFDHPPLDTLILAMPVSWKGTLQQYAG 734
                 789************96632.22...23389999*******************77434455998886899**************9999999******** PP

                 TSSS CS
  Helicase_C 106 RtgR 109
                 R +R
  EHT99464.1 735 RLHR 738
                 **99 PP

>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.2e-08   0.00015      23     169 ..     148     245 ..     141     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.2e-08
                    HHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH..................................HCHHHHC CS
  DNA_primase_S  23 fvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnlyrplhpflsrsmlkivkpvveeiileeqdpfeikkllr 118
                    +  +a ++++++  +++g +++l+v ++r G+H+wv     +   d++r  ++                                     i + ++
     EHT99464.1 148 WQADASAFMQSC--DELGVPAALEVSRSRQGAHIWVFFASRVLARDARRLGTA------------------------------------IISHTCN 205
                    566788999999..9************************************99....................................9****** PP

                    T--------..................-----------------....--- CS
  DNA_primase_S 119 llpdkslrekkkweakedivlvllyprldeqvtkgikhllkapfcihgktg 169
                    + ++ +l++           +++l+p  d+ ++ g+++l+++p ++ ++++
     EHT99464.1 206 RTRQLQLGS-----------YDRLFPNQDIMPKGGFGNLIALPLQKGPRES 245
                    *********...........************************9988865 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.9e-08   0.00024      57     222 ..     440     570 ..     430     582 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.9e-08
                 -EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  57 GGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvi 154
                  G+L+  ++ GKTv++ a i+       +         +++ tL++v   +ll+qW++ ++ +++ s+ ++ v gg+k  +k             d+ i
  EHT99464.1 440 CGVLCAPTAFGKTVTAAAAIA-------R---------RKVNTLVLVHRtELLKQWQERLRLFLQTSN-DIGVIGGGK--NK----------SGGDIDI 509
                 699******************.......1.........235588888776***************998.566666654..22..........3678888 PP

                 E-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 155 ttYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsled 222
                    + +sr+     + ++l++     +++DE+h ++   ++   ++++ ++++ + lt+TP+ ++  +
  EHT99464.1 510 AVMQSISRHG----EVDPLVKNY-GQIIVDECHHIGA--ASFDAILKEANARYVLGLTATPVRRDGLH 570
                 8889999888....689999865.67999******86..566677788899***********996544 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.045      31     160 ..     451     566 ..     429     576 .. 0.72
   2 ?   -2.4   0.0         1     3e+03      49      70 ..     641     662 ..     630     689 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
   SWI2_SNF2  31 KsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfakageekpkqaesrkeLkellekesekiifttiqKfeeeekeklevlsereniivlvDEa 129
                 K++t   +a+++++   ++ + +v++ R++L kQ ++ ++ + +++    ++   +    +k+ ++i ++++q ++++ +   + +++     ++vDE+
  EHT99464.1 451 KTVT---AAAAIAR---RKVNTLVLVHRTELLKQWQERLRLFLQTS----NDIGVIGGGKNKSGGDIDIAVMQSISRHGE-VDPLVKNYG--QIIVDEC 536
                 4444...3344444...5667788899********99999876665....233334444456689999999999986544.335555555..5789*** PP

   SWI2_SNF2 130 HRsqygelakklrkalpnaafigFTGTPilk 160
                 H     ++ + l++a     ++g+T TP+ +
  EHT99464.1 537 HHIGAASFDAILKEAN-ARYVLGLTATPVRR 566
                 *********9999985.45679******976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
   SWI2_SNF2  49 npkvvvvtDRkdLdkQlsktfa 70 
                   kv+v+t R+d  + +++++a
  EHT99464.1 641 GRKVLVLTERTDHLDDIASELA 662
                 5799******997777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 6227.81
//
Query:       EHT99465.1  [L=191]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-47  158.8   1.0    1.3e-46  158.4   1.0    1.2  1  Resolvase     Resolvase, N terminal domain
     0.0002   21.9   5.1    0.00068   20.2   0.7    2.3  2  HTH_32        Homeodomain-like domain
    0.00024   21.1   1.4     0.0029   17.6   0.0    2.3  2  HTH_29        Winged helix-turn helix
    0.00057   19.6   0.1      0.002   17.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
    0.00083   18.7   0.1      0.002   17.5   0.1    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0024   17.9   0.1     0.0056   16.8   0.1    1.6  1  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.023   14.8   0.0    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
       0.04   13.7   0.0        0.1   12.4   0.0    1.7  1  HTH_23        Homeodomain-like domain
      0.062   13.5   0.0       0.18   12.0   0.0    1.8  1  HTH_17        Helix-turn-helix domain
      0.093   12.4   0.6       0.37   10.5   0.0    2.1  2  Sigma70_r4_2  Sigma-70, region 4
       0.23   12.3   4.5       0.11   13.3   1.3    2.0  2  FliT          Flagellar protein FliT
       0.31   10.7   1.8         12    5.6   0.0    2.7  3  HTH_33        Winged helix-turn helix


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   1.0   8.5e-50   1.3e-46       2     145 ..       3     135 ..       2     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 8.5e-50
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEES CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvsl 100
                 igYaRvSt+eqd  +++Q+ al+ +++e    i   f++k +SG + +Rp+l+rll+++r+   d ++v+kldRL+Rs++dll +le++++ g++++s+
  EHT99465.1   3 IGYARVSTQEQD--TQAQISALKSAGCEL---I---FQEK-ASGGRWDRPELQRLLQQIRK--DDQVIVWKLDRLSRSLKDLLLTLEKIENTGADFRSI 90 
                 8***********..************777...9...****.********************..************************************ PP

                 S..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 101 degidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 +e+idtstp+gr+++qi++++aefer+++rertk+glaaa++ G+
  EHT99465.1  91 TENIDTSTPAGRMMMQIVGSFAEFERAMLRERTKNGLAAARQDGR 135
                 *******************************************98 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.064        95      28      56 ..      39      70 ..       6      80 .. 0.61
   2 !   20.2   0.7   4.6e-07   0.00068       7      73 .]     121     180 ..     116     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.064
      HTH_32 28 klsdevrariiallreep...rWsprqlaarl 56
                +++  + +r+++ +r++     W +++l++ l
  EHT99465.1 39 RWDRPELQRLLQQIRKDDqviVWKLDRLSRSL 70
                45566666666666443356666666665555 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4.6e-07
      HTH_32   7 kRyneeGlegLk.drprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 
                 +R  + Gl++ + d + +gr++kl+++++++i+ l+++  + +    a+        +v++stv r+L
  EHT99465.1 121 ER-TKNGLAAARqDGRVGGRRPKLTPQQQKEIVSLVTSG-QKTGADAARLF------RVHPSTVVRLL 180
                 45.56788855526666689999*************555.77777777755......78888887776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.4     0.084   1.3e+02      40      62 ..     126     148 ..     119     150 .. 0.62
   2 !   17.6   0.0   1.9e-06    0.0029       2      41 ..     149     188 ..     148     191 .] 0.91

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.084
      HTH_29  40 Glaalld..rrrsgrprnrlseeqe 62 
                 Glaa++   r +++rp  +l+++q+
  EHT99465.1 126 GLAAARQdgRVGGRRP--KLTPQQQ 148
                 6666555445555555..4999986 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.9e-06
      HTH_29   2 aqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGl 41 
                 ++++ l+  G++t +++A+l +++++tv r l r +++++
  EHT99465.1 149 KEIVSLVTSGQKTGADAARLFRVHPSTVVRLLARHRMTEI 188
                 78999***************************99887766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         3   4.4e+03       9      19 ..      41      51 ..      41      51 .. 0.83
   2 !   17.8   0.0   1.3e-06     0.002       2      44 .]     140     183 ..     139     183 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3
      HTH_38  9 eReeIerllae 19
                +R e++rll++
  EHT99465.1 41 DRPELQRLLQQ 51
                68899999986 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.3e-06
      HTH_38   2 ykhLsleeReeIerllaeG.lslreIArrLgrspsTIsRElkRn 44 
                 + +L++++  eI  l   G ++ ++ Ar+  ++psT+ R l R+
  EHT99465.1 140 RPKLTPQQQKEIVSLVTSGqKTGADAARLFRVHPSTVVRLLARH 183
                 789*************9999*********************996 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.3e-06     0.002      19      51 ..     150     183 ..     147     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
  HTH_Tnp_ISL3  19 yilellles.rsvkavArqlgvSwtTVwrildry 51 
                    i+ l++++ ++ +++Ar+++v+++TV r l r+
    EHT99465.1 150 EIVSLVTSGqKTGADAARLFRVHPSTVVRLLARH 183
                   6899999999999*****************9997 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   3.7e-06    0.0056       3      35 ..     149     182 ..     147     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.7e-06
      HTH_28   3 leiikllaaGh.svreaArelgisrrtvyrWikr 35 
                 +ei+ l+ +G  + ++aAr++ ++++tv r++ r
  EHT99465.1 149 KEIVSLVTSGQkTGADAARLFRVHPSTVVRLLAR 182
                 79*******998******************9987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.5e-05     0.023       1      43 [.     138     181 ..     138     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
                 S---SS-HHHHGGGGSSTTTT.--STTTSSSS---SSSS--SS- CS
       HTH_7   1 GRpsklskndinrvvkLleeG.isiskIAkevnisRsTvYRyla 43 
                 GR++kl++ ++ ++v L+ +G  + ++ A+ + + +sTv R la
  EHT99465.1 138 GRRPKLTPQQQKEIVSLVTSGqKTGADAARLFRVHPSTVVRLLA 181
                 9********************8888999**********988775 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05       0.1      10      40 ..     151     182 ..     145     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
      HTH_23  10 illllae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 i+ l+    ++ +++Ar++ v+++Tv r l r
  EHT99465.1 151 IVSLVTSgQKTGADAARLFRVHPSTVVRLLAR 182
                 5666666678899****************998 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.18       5      26 ..     163     184 ..     161     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
      HTH_17   5 eEaAelLgvsrstvyrlirrge 26 
                 ++aA+l++v++stv rl+ r++
  EHT99465.1 163 ADAARLFRVHPSTVVRLLARHR 184
                 69**************998876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.69     1e+03       3      20 ..      44      61 ..      42      73 .. 0.73
   2 ?   10.5   0.0   0.00024      0.37      12      49 ..     145     182 ..     145     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.69
                  HHHHHHTTS-HHHHHHHH CS
  Sigma70_r4_2  3 alrealaeLperqreifl 20
                  +l+++l++  ++++ i+ 
    EHT99465.1 44 ELQRLLQQIRKDDQVIVW 61
                  578888888888887775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
                   -HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2  12 perqreifllryleglsykEIAellgisegtVksrlsR 49 
                   p++q+ei+ l    +++ +++A+l+ ++++tV + l+R
    EHT99465.1 145 PQQQKEIVSLVTSGQKTGADAARLFRVHPSTVVRLLAR 182
                   899*****************************999888 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   7.3e-05      0.11      12      74 ..       7      76 ..       4      81 .. 0.92
   2 ?   -1.4   0.1       2.9   4.3e+03      31      44 ..     133     152 ..     113     159 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
                HHHHHHHHHHHHHHHHHCS-.......-ST--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
        FliT 12 elaaleaerqqlverlreld.......aaplspaereekrellrrilandaeirallqprldelqkllga 74
                +++++e++ q+++ +l+++         a     +r+e+++ll++i+++d+ i   l++   +l++ll +
  EHT99465.1  7 RVSTQEQDTQAQISALKSAGcelifqeKASGGRWDRPELQRLLQQIRKDDQVIVWKLDRLSRSLKDLLLT 76
                78999********************99999***********************99999999999998866 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
                 -......-ST--HHHHHHHH CS
        FliT  31 d......aaplspaereekr 44 
                 d       + l+p++++e+ 
  EHT99465.1 133 DgrvggrRPKLTPQQQKEIV 152
                 23445555566666666665 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       4.8   7.2e+03      46      53 ..      11      18 ..       6      18 .. 0.72
   2 ?    3.8   0.0     0.029        44       2      16 ..      37      51 ..      36      52 .. 0.91
   3 ?    5.6   0.0    0.0084        12      21      37 ..     170     186 ..     169     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.8
      HTH_33 46 pkqdpeaq 53
                 +qd +aq
  EHT99465.1 11 QEQDTQAQ 18
                79999998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
      HTH_33  2 fgrWtlarlaqliee 16
                +grW +++l++l+++
  EHT99465.1 37 GGRWDRPELQRLLQQ 51
                79**********997 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0084
      HTH_33  21 sysvsgvyrlLkrlGfs 37 
                 ++++s+v rlL r+ ++
  EHT99465.1 170 RVHPSTVVRLLARHRMT 186
                 589***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1598.47
//
Query:       EHT99466.1  [L=173]
Description: hypothetical protein CKS_1620 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-41  140.9   0.7    4.6e-41  140.8   0.7    1.0  1  FUSC-like  FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.7   2.6e-45   4.6e-41       2     154 ..      22     171 ..      21     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 2.6e-45
   FUSC-like   2 LavtllcfalaslivqlllpypwlfvlglllstflftmlgalGqryatiafatLlvaiytmlgasqepeiwqqplllllGalwYgllsllwsllfpnrp 100
                 L+v   +fal sl++q ll  +++++l+l+ + +l++++g +++ +a++ +atL++ai+t++  ++ + i+  pll++ G+lwYgl++++w++l++++p
  EHT99466.1  22 LIVGGSLFALGSLLMQWLLFKDVPLPLILFALPLLLGVTGEISPLHARLLPATLIAAIFTTSLIGR-MPIYVPPLLYIGGTLWYGLFNWFWFWLWKEQP 119
                 889999***********************************************************5.55****************************** PP

   FUSC-like 101 vqqsLaelfealAdYleaKaslfepdreddleakrlaLaqqnakvvealnaare 154
                 +++sL+ ++++lA+Y++aK+ l+  ++  d+e++ ++L+ +++k+++ +n++++
  EHT99466.1 120 MRESLSLIYRELANYCDAKYTLL--TQLTDPEKALPPLLARQQKAIDLINTCYQ 171
                 ***********************..***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1380.40
//
Query:       EHT99467.1  [L=63]
Description: hypothetical protein CKS_1619 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 513.46
//
Query:       EHT99468.1  [L=210]
Description: cyclic AMP receptor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-24   84.7   0.0    5.4e-24   84.1   0.0    1.3  1  cNMP_binding  Cyclic nucleotide-binding domain
    4.3e-14   52.2   0.1    2.2e-13   50.0   0.0    2.0  2  HTH_Crp_2     Crp-like helix-turn-helix domain
      5e-09   35.7   0.1    9.2e-09   34.8   0.1    1.5  1  Crp           Bacterial regulatory proteins, crp family
    0.00016   21.5   0.0     0.0012   18.7   0.0    2.1  2  MarR_2        MarR family
    0.00053   19.7   0.0     0.0014   18.4   0.0    1.8  1  HTH_23        Homeodomain-like domain
     0.0011   18.5   0.1       0.16   11.4   0.1    2.3  2  RepL          Firmicute plasmid replication protein (RepL)
     0.0014   18.6   0.0     0.0068   16.3   0.0    2.1  3  HTH_36        Helix-turn-helix domain
     0.0074   16.2   0.1      0.029   14.3   0.1    1.9  2  MarR          MarR family
     0.0088   15.6   0.2      0.023   14.2   0.2    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.021   14.4   0.8      0.057   12.9   0.2    2.0  3  Sigma70_r4    Sigma-70, region 4
      0.057   13.5   0.1       0.23   11.5   0.1    2.1  1  HTH_7         Helix-turn-helix domain of resolvase
      0.091   13.1   0.2       0.85   10.0   0.0    2.3  2  Rrf2          Transcriptional regulator
        0.1   13.1   0.0       0.16   12.4   0.0    1.4  1  HhH-GPD       HhH-GPD superfamily base excision DNA repair pr
       0.11   12.5   0.4       0.24   11.4   0.1    1.8  2  HTH_11        HTH domain
       0.12   12.1   0.1       0.47   10.2   0.0    2.0  2  HTH_38        Helix-turn-helix domain
       0.13   12.2   0.0       0.31   10.9   0.0    1.6  2  DUF4868       Domain of unknown function (DUF4868)
       0.14   12.8   0.1       0.29   11.8   0.1    1.5  1  RPA_C         Replication protein A C terminal


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   5.2e-27   5.4e-24       3      88 ..      23     109 ..      21     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 5.2e-27
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall.tgeprtatvvAltdsellalprddflellqq 88 
                   +++  +++++qG++a++ly++++G+v+v  ++e+gke++l +l++Gd++Gel+l+ +g+ r+a v+A+t +e+++++ ++f++l+q 
    EHT99468.1  23 KYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFeEGQERSAWVRAKTACEVAEISYKKFRQLIQV 109
                   7999***************************************************98899************************985 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   1.3e+03      25      38 ..     119     132 ..     106     135 .. 0.84
   2 !   50.0   0.0   2.1e-16   2.2e-13       1      59 [.     142     206 ..     142     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                 HHHHHHTTSSHHHH CS
   HTH_Crp_2  25 eelAsmlGltretv 38 
                  ++A++l +t e v
  EHT99468.1 119 SQMARRLQVTSEKV 132
                 58999999998877 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 2.1e-16
                 HHHHHHHHHHHCTTTC.....EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEE CS
   HTH_Crp_2   1 qRlArfLlrlaeragg.....eielpltqeelAsmlGltretvsrilseLkreglis.rgrriri 59 
                 +R+A++Ll+la+++++       ++++t++e+++++G +retv ril+ L++++lis  g++i++
  EHT99468.1 142 GRIAQTLLNLAKQPDAmthpdGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISaHGKTIVV 206
                 6*********88855233345689*********************************77755775 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   8.7e-12   9.2e-09       1      32 []     166     197 ..     166     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 8.7e-12
                 EE--HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp   1 LpmSRqdIAdylGlTrETVSRlLtrLrekGLI 32 
                 ++ +Rq+I+  +G++rETV+R L+ L+ + LI
  EHT99468.1 166 IKITRQEIGQIVGCSRETVGRILKMLEDQNLI 197
                 578***********************999888 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.8   8.4e+02      25      35 ..     119     129 ..     111     135 .. 0.84
   2 !   18.7   0.0   1.1e-06    0.0012       1      51 [.     138     197 ..     138     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.8
                 HHHHHHHTSSH CS
      MarR_2  25 gelarrlglsk 35 
                 ++ arrl+++ 
  EHT99468.1 119 SQMARRLQVTS 129
                 7889***9986 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
                 TT--HHHHHHHHHHHCTTTS.........EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2   1 lgltpaqarvLaaLgrrpgr.........dltvgelarrlglsksavsrilkrLvaaGLv 51 
                 l++t+ +a+ L++L+  p+          ++t +e+ +  g s+ +v rilk L+++ L+
  EHT99468.1 138 LDVTGRIAQTLLNLAKQPDAmthpdgmqiKITRQEIGQIVGCSRETVGRILKMLEDQNLI 197
                 5899***********************9999****************************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.3e-06    0.0014      17      40 ..     167     190 ..     145     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
      HTH_23  17 GlsvreIAreLgvsrrTvyrwlkr 40 
                 +++++eI ++ g+sr Tv r+lk 
  EHT99468.1 167 KITRQEIGQIVGCSRETVGRILKM 190
                 789*******************96 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014        14     102     131 ..      96     125 ..      87     136 .. 0.74
   2 !   11.4   0.1   0.00015      0.16      74     109 ..     166     201 ..     141     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.014
        RepL 102 anilkkkanGvlvinPdllfkGddkkrlnl 131
                 a+i  kk    + +nPd+l++   +  + l
  EHT99468.1  96 AEISYKKFRQLIQVNPDILMRLSSQMARRL 125
                 5566677778899********877665554 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
        RepL  74 liatnRelaeetgislktvsetlkileeanilkkka 109
                 + +t+ e+ +  g s +tv + lk+le+ n++  + 
  EHT99468.1 166 IKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 201
                 4568889************************97654 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.1   4.4e+03      25      31 ..      24      30 ..      16      33 .. 0.81
   2 ?   -2.9   0.0       6.4   6.7e+03      11      32 ..      71      93 ..      70     102 .. 0.67
   3 !   16.3   0.0   6.4e-06    0.0068      33      55 .]     175     197 ..     168     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.1
      HTH_36 25 fpsqetl 31
                +ps++tl
  EHT99468.1 24 YPSKSTL 30
                8999998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.4
      HTH_36 11 lgslasfankngg.cfpsqetla 32
                +g+l  f  + +  ++   +t +
  EHT99468.1 71 IGELGLFEEGQERsAWVRAKTAC 93
                57777787777777887766655 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 6.4e-06
      HTH_36  33 krlglsknTvsraikeLeqlGyi 55 
                 +  g+s++Tv r++k+Le+  +i
  EHT99468.1 175 QIVGCSRETVGRILKMLEDQNLI 197
                 678***************99887 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.3   3.5e+03      21      30 ..     119     128 ..     104     134 .. 0.73
   2 !   14.3   0.1   2.8e-05     0.029      17      48 ..     167     198 ..     163     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.3
                 HHHHHHHTS- CS
        MarR  21 seLakklgvs 30 
                 s++a++l+v+
  EHT99468.1 119 SQMARRLQVT 128
                 3777777776 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.8e-05
                 TEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  17 plsvseLakklgvskstvtrvldrLekkGlie 48 
                  ++ +e++  +g+s+ tv r+l+ Le+++li+
  EHT99468.1 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198
                 56677*************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   2.2e-05     0.023      18      47 ..     168     197 ..     167     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
      HTH_24  18 isqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 i+ +e+ + +g S+ tv r lk Le++ lI
  EHT99468.1 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLI 197
                 99*************************998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.2   5.4e+03      18      29 ..      87      98 ..      84      98 .. 0.78
   2 ?   -2.8   0.0       4.4   4.6e+03      26      37 ..     121     132 ..     119     132 .. 0.78
   3 ?   12.9   0.2   5.4e-05     0.057      22      42 ..     169     189 ..     167     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.2
                TTT--HHHHHHH CS
  Sigma70_r4 18 geglTleEIger 29
                ++  T +E++e+
  EHT99468.1 87 VRAKTACEVAEI 98
                567899999985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.4
                 HHHHHTS-HHHH CS
  Sigma70_r4  26 IgerlgiSrerV 37 
                  ++rl+++ e V
  EHT99468.1 121 MARRLQVTSEKV 132
                 589999998876 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 5.4e-05
                 -HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4  22 TleEIgerlgiSrerVrqiek 42 
                 T +EIg++ g Sre+V +i+k
  EHT99468.1 169 TRQEIGQIVGCSRETVGRILK 189
                 679*************99876 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00022      0.23      22      42 ..     168     188 ..     164     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                 --STTTSSSS---SSSS--SS CS
       HTH_7  22 isiskIAkevnisRsTvYRyl 42 
                 i++++I  +v++sR+Tv R+l
  EHT99468.1 168 ITRQEIGQIVGCSRETVGRIL 188
                 899**************9998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.84   8.9e+02      27      57 ..      99     129 ..      88     132 .. 0.73
   2 ?   10.0   0.0   0.00081      0.85      25      57 ..     165     199 ..     142     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.84
                 -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2  27 sseeiaerqnispsylekilakLrkaglvks 57 
                 s ++  +  +++p +l ++ +++++   v+s
  EHT99468.1  99 SYKKFRQLIQVNPDILMRLSSQMARRLQVTS 129
                 5555566778999999999999888777766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00081
                 -..B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2  25 p..vsseeiaerqnispsylekilakLrkaglvks 57 
                 +  ++ +ei + ++ s++ + +il++L+ ++l+ +
  EHT99468.1 165 QikITRQEIGQIVGCSRETVGRILKMLEDQNLISA 199
                 2448889*************************976 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.16      29      70 ..      91     156 ..      76     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                 SHHHHHHSHHHHHHHHHTT.....STTHHHHHHHHHHHHHHHH...................S-SS CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx...................xxxx RF
     HhH-GPD  29 tpedladadeekLrelire.....lGfyrrKakyikelArilv...................gkpd 70 
                 t+ ++a+++ +k+r+li+      +++++++a++++ +++++                    ++pd
  EHT99468.1  91 TACEVAEISYKKFRQLIQVnpdilMRLSSQMARRLQVTSEKVGnlafldvtgriaqtllnlaKQPD 156
                 777899**********9999********************99766666666666666666664444 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.6   8.1e+03      19      28 ..     119     128 ..     118     130 .. 0.77
   2 ?   11.4   0.1   0.00023      0.24      16      43 ..     168     195 ..     165     210 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.6
      HTH_11  19 eeLAeeLnvS 28 
                 +++A++L v+
  EHT99468.1 119 SQMARRLQVT 128
                 5789999996 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00023
      HTH_11  16 isgeeLAeeLnvSrrtvrrdIkaLeelg 43 
                 i+ +e+ +  ++Sr tv r +k Le++ 
  EHT99468.1 168 ITRQEIGQIVGCSRETVGRILKMLEDQN 195
                 899*******************999876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.4   6.8e+03      25      31 ..     120     126 ..     119     128 .. 0.78
   2 ?   10.2   0.0   0.00045      0.47      24      42 ..     171     189 ..     162     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.4
      HTH_38  25 eIArrLg 31 
                 ++ArrL 
  EHT99468.1 120 QMARRLQ 126
                 7899996 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00045
      HTH_38  24 reIArrLgrspsTIsRElk 42 
                  eI++++g+s+ T+ R lk
  EHT99468.1 171 QEIGQIVGCSRETVGRILK 189
                 59**************997 PP

>> DUF4868  Domain of unknown function (DUF4868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6   3.8e+03     127     140 ..      97     112 ..      58     133 .. 0.51
   2 ?   10.9   0.0    0.0003      0.31     147     185 ..     159     198 ..     145     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
     DUF4868 127 kikkkgvll..ykqed 140
                 +i+ k++++  + ++d
  EHT99468.1  97 EISYKKFRQliQVNPD 112
                 2333333334334444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0003
     DUF4868 147 kvpk.lklnikfeangkIvltekkqvedliklLnDdylkS 185
                 ++p  ++++i+ ++ g+Iv ++ + v  ++k+L+D+ l S
  EHT99468.1 159 THPDgMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198
                 67888999*****9**********************9988 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00028      0.29      34      94 ..     131     194 ..     108     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00028
                 XXXXXXXXXXX.XSXHHHHHHHHHHHH...SXSTTTEEH....HHHHHHSTSXHHHHHHHHHHHHHT CS
       RPA_C  34 alsgnqaklankgltalaqqvlnlikq..speseeGvhv....deiaqklrlsvndvkqavdeLsne 94 
                 ++++    +      + aq++lnl kq  ++ +++G+++    +ei q ++ s ++v ++++ L+++
  EHT99468.1 131 KVGNLAFLD---VTGRIAQTLLNLAKQpdAMTHPDGMQIkitrQEIGQIVGCSRETVGRILKMLEDQ 194
                 344444444...44899********************993333456666699*******99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1717.29
//
Query:       EHT99469.1  [L=134]
Description: OsmC family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-18   66.7   0.0    2.6e-18   66.4   0.0    1.1  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.4e-22   2.6e-18       2      99 ..      30     127 ..      28     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.4e-22
                 TXSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHH.HHHSHHHHHHCT-SSSEE CS
        OsmC   2 dgsgpsPeelllaalasCfaitlravakkkgikledleveveaerdpegakgiteirlkvevkipgadseeklkklleka.ekrCpvsntlkngvkvel 99 
                 ++++psP+e++l+a ++C ai++ ++++k + ++ d+ev+++ er +e+++ +t+i+l++ v+ ++a s++ ++++++++ ek+C+v+ +l +gv++++
  EHT99469.1  30 GDKAPSPMEMVLMAAGGCSAIDVVSILQKGRNDVVDCEVKLSSERREEAPRIFTHINLHFIVS-GNALSDKAVARAVDLSaEKYCSVAIMLGKGVNITH 127
                 578**************************************99999999999**********5.666667*********99***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 979.64
//
Query:       EHT99470.1  [L=289]
Description: putative phosphoribulokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-74  249.0   0.0    3.6e-74  248.8   0.0    1.1  1  PRK         Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.021   14.7   0.0    1.3  1  APS_kinase  Adenylylsulphate kinase


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8   0.0     4e-78   3.6e-74       1     197 []       7     214 ..       7     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 248.8 bits;  conditional E-value: 4e-78
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteea 99 
                 +I+v+gsSGaG+tt++ +++kif++ +++aae egdsf+r++r e+d++++++++ + +++s+++peandf+ll++++ e++e +k+++++Y h+++ea
  EHT99470.1   7 IIAVTGSSGAGTTTTSLAFRKIFQQLGLHAAELEGDSFHRFTRPEMDMAIRKARDLG-RHISYFGPEANDFGLLEQTFIEYGEHGKGQSRKYLHTYDEA 104
                 8****************************************************9999.9**************************************** PP

         PRK 100 ap.........dkeeliegadvlviEGlhalyder...vaelldlkiyvdisidlelarklqRDiaeRGrsleavldsilrrkpdyvnyikpqfseadl 186
                 +p         ++++l+ ++dvl++EGlh+++++    vae +dl ++v+++++le+++kl+RD++eRG+s+eav+ds++r+++dy+n+i+pqfs++++
  EHT99470.1 105 VPwnqvpgtftPWQPLPPDTDVLFYEGLHGGVVTAqhnVAEKVDLLVGVVPIVNLEWIQKLVRDTSERGHSREAVMDSVVRSMEDYINFITPQFSRTHI 203
                 *********************************99999************************************************************* PP

         PRK 187 iiqrvptvdvs 197
                 ++qrvptvd+s
  EHT99470.1 204 NFQRVPTVDTS 214
                 *********96 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-06     0.021       4      41 ..       7      44 ..       4      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-06
                EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41
                ++ +tG sg+G +t + a+ k  ++ g ++  L+Gd+ 
  EHT99470.1  7 IIAVTGSSGAGTTTTSLAFRKIFQQLGLHAAELEGDSF 44
                6789********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2496.07
//
Query:       EHT99471.1  [L=72]
Description: uncharacterized UPF0270 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-35  120.4   0.3    2.6e-35  120.3   0.3    1.0  1  UPF0270   Uncharacterised protein family (UPF0270)


Domain annotation for each model (and alignments):
>> UPF0270  Uncharacterised protein family (UPF0270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.3   1.5e-39   2.6e-35       1      68 [.       1      68 [.       1      69 [. 0.98

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.5e-39
                EE--GGGS-HHHHHHHHHHHHH--------.---HHHHHHHHHHHHHTTSEEEEE-TTT--EEEEEGG CS
     UPF0270  1 miIPyqqLepetLenlieefvlregtDyGeqelsleekveqvkqqLksgeavivfselhesvnivpke 68
                miIP++q++petLenlie+fvlregtDyGeqelsl+ekv++v++qL++ge+v+v+selhesvni++k+
  EHT99471.1  1 MIIPWEQVSPETLENLIEAFVLREGTDYGEQELSLTEKVADVRRQLEHGEVVLVWSELHESVNIMRKS 68
                9****************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 609.64
//
Query:       EHT99472.1  [L=338]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-13   49.6   0.1    7.4e-13   48.7   0.1    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
    3.2e-08   33.1   0.0    4.9e-08   32.5   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.23   10.9   0.7        9.7    5.6   0.0    2.4  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   1.2e-16   7.4e-13       1     255 [.      74     314 ..      74     316 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.2e-16
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.. 94 
                    p +v++hGl gs+++++ +gl+  + ++g+  +++  rG+   + +++ i +  +t + + +l+++  + g  + t vG+S+GG +   ++ +   
     EHT99472.1  74 PRVVLFHGLEGSFHSPYIHGLMLQCKQRGWLAVVMHFRGCSGEPNRLNRIYHSGETEDARFFLHWLTTRWGRVPTTAVGFSLGGNMLGCLLGQQgd 169
                    679************9999999899888*****************************9999999********************888888888879 PP

                    GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHH CS
  Abhydrolase_1  95 perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksie 190
                       ++a v ++a   + +l+ +  +   +f    ++y     +++a ++l     +l++++        ++ + r+ +++ d  +  a+g + + +
     EHT99472.1 170 EALIDAGVIVSA---PLMLEPCSARLERGFSQVYQRYLLSQLKKNAQRKLRAWPDTLPVNLI-------QLNALRRLRDFDDAITARAHGFADATD 255
                    99**********...*********************************99999999999976.......999************************ PP

                    HHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 191 qwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    ++     +++l +  +      p l+i++ +Dp ++++++ + aql    ++   +++gH  f  
     EHT99472.1 256 YYRRASAMPRLKFVTK------PLLIIHAKDDPFMSDEVIPQPAQLSATITYQLTQQGGHVGFVS 314
                    ****999999999888......************************999999********98865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   8.2e-12   4.9e-08       2     208 ..      71     287 ..      70     309 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 8.2e-12
  Hydrolase_4   2 epkavvvlvHGlae..hsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl..l 95 
                  ++k  vvl+HGl    hs   + l+ +  ++G+  + +  rG   ++++  ++ + +  ++D++ f++ + +++++ p + +G S+GG +   +l  +
   EHT99472.1  71 RHKPRVVLFHGLEGsfHSPYIHGLMLQCKQRGWLAVVMHFRGCSGEPNRLNRIYH-SGETEDARFFLHWLTTRWGRVPTTAVGFSLGGNMLGCLLgqQ 167
                  57889******976337777777********************999655554444.55589***************************9987777444 PP

  Hydrolase_4  96 rypdkva.glilsaPalkikaklk.appllkl.llkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraaki 190
                    ++ ++ g+i+saP++  + + +  + + ++  + ll++l ++ q + +  +d l  +  ++ a+++     ++it+r ++++ da+++ ++  a  
   EHT99472.1 168 GDEALIDaGVIVSAPLMLEPCSARlERGFSQVyQRYLLSQLKKNAQRKLRAWPDTLPVNLIQLNALRRLRDFDDAITAR-AHGFADATDYYRRASAMP 264
                  44457889*******9977766543444444432345555555555555556666666666666666666665555555.345555555444433322 PP

  Hydrolase_4 191 t.....lPllllhGeaDkvvdpe 208
                  +      Pll++h+++D+ ++ e
   EHT99472.1 265 RlkfvtKPLLIIHAKDDPFMSDE 287
                  2224449**********998765 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.4    0.0097        58      67      87 ..     149     169 ..      94     178 .. 0.81
   2 ?    5.6   0.0    0.0016       9.7     112     155 ..     244     282 ..     232     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0097
                   EEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  67 aitGgSyGGyltgaalnqrpd 87 
                    + G S GG + g++l+q++d
    EHT99472.1 149 TAVGFSLGGNMLGCLLGQQGD 169
                   5789*************9986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0016
                   HHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-S CS
  Peptidase_S9 112 teeymewgnpeeneegykelspyspldnvkaypplLlihGlaDd 155
                   t++  ++ +     ++y+++s++  l+   +++plL+ih+  D 
    EHT99472.1 244 TARAHGFAD---ATDYYRRASAMPRLKF--VTKPLLIIHAKDDP 282
                   554444444...4788877777777777..9*********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2790.24
//
Query:       EHT99473.1  [L=199]
Description: putative LysE/RhtB family efflux protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-16   59.2  17.7    4.5e-16   58.9  17.7    1.1  1  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9  17.7   2.5e-20   4.5e-16       3     181 ..      16     189 ..      14     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 2.5e-20
        LysE   3 lllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpfl 101
                  +++pGp+n+l  + g++ gf  ++ +++g++ig + l+ll+++G+  L+  +p ++ il+++G +yLlwl+++ + +a ek +  ++ v      pf 
  EHT99473.1  16 AAITPGPNNMLLTASGANFGFLRTLPLMIGIMIG-MQLMLLVAFGVGGLILLYPSLHLILKIAGSLYLLWLAWKIATAAYEKLETDAAPV---APMPFW 110
                 5789*****************************9.789******************************************9996555544...589*** PP

        LysE 102 kglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvl 181
                 +g ll l NPka l +l+ ++++  + ++  + ++l++ +g+v++ l+  ++   ++a++ r l+s+++++  n  +g+l
  EHT99473.1 111 QGGLLQLINPKAWLMALGAVASFSLA-GAGYRHSVLLISLGMVMVNLVAGVIWMGFGAMIGRILRSPRAWKRFNLSMGLL 189
                 *********************99985.45555666666677776665444444444455556666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1564.57
//
Query:       EHT99474.1  [L=326]
Description: putative LacI family bacterial regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-34  118.2   0.0    6.5e-34  117.7   0.0    1.2  1  Peripla_BP_3   Periplasmic binding protein-like domain
    1.2e-22   80.7   0.0    1.7e-22   80.2   0.0    1.1  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    3.3e-17   62.0   0.1    7.7e-17   60.8   0.1    1.7  1  LacI           Bacterial regulatory proteins, lacI family
    1.6e-12   47.6   0.0    3.4e-12   46.5   0.0    1.6  1  Peripla_BP_4   Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.017   15.2   0.0       0.04   14.0   0.0    1.7  1  HTH_3          Helix-turn-helix
      0.024   15.0   0.6      0.078   13.3   0.0    2.3  2  HTH_31         Helix-turn-helix domain
      0.066   13.3   0.0       0.14   12.2   0.0    1.6  1  HTH_7          Helix-turn-helix domain of resolvase
      0.069   13.2   0.0       0.26   11.4   0.0    1.9  2  ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   2.9e-37   6.5e-34       1     165 [.     166     325 ..     166     326 .] 0.90

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 2.9e-37
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   v++L+ +G +ria+++  gd +  +s+ re+g+r+ +++ g +   +v+++ +  ++++ + ++    l  la++P+Av+a sD+lA+gv+ a+ ea
    EHT99474.1 166 VHYLAGRGRKRIALVN--GDMRYLYSQYREQGYREGVAQSGSDWTNVVYTEGITCEEGSRALQE----LlRLAEPPDAVFAVSDVLAVGVVHAALEA 256
                   689*************..99999********************777777777666655555555....3355669********************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   glrvPedl+v+gfd++++++ ++PplTt++qp+ +lG + ++lll+ +++++ap  +++lp +  eR+S
    EHT99474.1 257 GLRVPEDLAVVGFDGIPFTSSLNPPLTTIEQPMYQLGARSVQLLLKKIRQPHAPVVREVLPWTRLERAS 325
                   ******************************************************999999887778877 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   7.6e-26   1.7e-22       2     260 ..      59     307 ..      58     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 7.6e-26
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPc 97 
                   + l++++ + ++Pf   +v+gi+ +a+ hg+ +ll +  ++ + + +++ ll  k +dg+i   ++    ++        p i + +  d   +  +
    EHT99474.1  59 HMLLVLISDITNPFCSRVVQGIEAEAEMHGYHILLCNSASQFKREsAYLTLLTGKVVDGVITMDAAAGLQSLIDIIGD-APWIQCCEF-DPEIAASS 153
                   6688888999**********************************99**************988666665566555544.899999665.66678899 PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHHH CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindeaa 192
                   v  d   a+     +L  +g kr ial++g+   l++++r qG+++ +a++G +     v +   + e++  al+ell+    P+  a+ a +d  a
    EHT99474.1 154 VSIDHLDAARDTVHYLAGRGRKR-IALVNGDMRYLYSQYREQGYREGVAQSGSD-WTNVVYTEGITCEEGSRALQELLRLAepPD--AVFAVSDVLA 246
                   99*********************.*****************************4.455677778899************999566..********** PP

                   HHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH..- CS
  Peripla_BP_1 193 lGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki..n 260
                   +G v a++ +G l+ +e+      +vv++dg+  +  +   ++pl++i+ p  +lG  + + +l+ki  +
    EHT99474.1 247 VGVVHAALEAG-LRVPEDL-----AVVGFDGI--PFTSS-LNPPLTTIEQPMYQLGARSVQLLLKKIrqP 307
                   ***********.*******.....********..55555.578999999999*************99432 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   3.4e-20   7.7e-17       2      46 .]       3      47 ..       2      47 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 3.4e-20
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                i+ VA lAGVSkaTVSrvLn ++ V+++tr++V+ a+++ +Y+Pn
  EHT99474.1  3 IDKVALLAGVSKATVSRVLNAHPGVKADTRQKVLDAIATSGYQPN 47
                788*****************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.5e-15   3.4e-12       3     220 ..      63     273 ..      61     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.5e-15
                   EEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-H.HHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   3 vvvkdksnpffsaaregleeaakelgaevtvvgdaenda.aeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   v+++d +npf+s + +g+e+ a+  g+   +   +++++ +++ a +  +  k vdg+i     +++l++ ++ + +a  p +    +  + +  ++
    EHT99474.1  63 VLISDITNPFCSRVVQGIEAEAEMHGYHILLC--NSASQfKRESAYLTLLTGKVVDGVITM-DAAAGLQSLIDIIGDA--PWIQCCEF--DPEIAAS 152
                   6788999********************99998..77777366666666666666**99865.3446899*******99..88876666..5778999 PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH....-TTCEECCEEESTTTCHHHHHHHHHHHHH.TTTECEEEES CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke....ypgikivaevaganwdaekaqqaleallt.anpldgilaa 190
                    v++d  +a++    yla       + +++++G+    ++++r++g r+  ++    ++++      ++ + + e++ +al++ll+ a+p d+++a+
    EHT99474.1 153 SVSIDHLDAARDTVHYLAGRGR---KRIALVNGDMRYLYSQYREQGYREGVAQsgsdWTNVV-----YTEGITCEEGSRALQELLRlAEPPDAVFAV 241
                   ******************9998...56**************************543333333.....34489**************99989****** PP

                   SCCHHHCHHHHHHHTTT..TSTEEEEEES-HH CS
  Peripla_BP_4 191 ndgmaegalealeaagl..agkvvvtgqDatp 220
                   +d+ a g++ a  +agl    + +v+g+D+ p
    EHT99474.1 242 SDVLAVGVVHAALEAGLrvPEDLAVVGFDGIP 273
                   *****************8444455*****987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05      0.04      10      45 ..       1      40 [.       1      42 [. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHTSSHHHHHHHHTT....SSCSBHHHHHHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnG....ernPsletlkkla 45
                +s+ ++A ++Gvs++t+sr  n     ++  ++++l ++a
  EHT99474.1  1 MSIDKVALLAGVSKATVSRVLNAhpgvKADTRQKVLDAIA 40
                78999*****************977777777777777766 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-05     0.078      15      57 ..       1      42 [.       1      52 [. 0.81
   2 ?   -2.6   0.1       3.4   7.6e+03      47      58 ..     250     262 ..     234     265 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +s + vA ++gvs++t+sr+ ++  g ++ ++  ++++a  ++
  EHT99474.1  1 MSIDKVALLAGVSKATVSRVLNAHPG-VKADTRQKVLDAIATS 42
                57899*****************9998.8777777777776655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.4
      HTH_31  47 lealara.lgldp 58 
                 + a+++a l++++
  EHT99474.1 250 VHAALEAgLRVPE 262
                 4444433355555 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.4e-05      0.14      22      44 ..       1      23 [.       1      24 [. 0.95

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.4e-05
                --STTTSSSS---SSSS--SS-- CS
       HTH_7 22 isiskIAkevnisRsTvYRylad 44
                +si k+A   ++s++Tv R+l++
  EHT99474.1  1 MSIDKVALLAGVSKATVSRVLNA 23
                79*******************97 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.26      24      54 ..      25      55 ..      13      69 .. 0.81
   2 ?   -3.3   0.0       4.4   9.8e+03      47      57 ..     292     302 ..     290     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                   TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHH CS
  ClpB_D2-small 24 rgvelevtdealdalaekgydpeyGARpLrr 54
                    gv+ +  +++lda+a  gy+p+  AR+Lr+
     EHT99474.1 25 PGVKADTRQKVLDAIATSGYQPNLLARQLRT 55
                   57999999*********************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.4
                    TBTCCHHHHHH CS
  ClpB_D2-small  47 yGARpLrriiq 57 
                     GAR+++ +++
     EHT99474.1 292 LGARSVQLLLK 302
                    79999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.33
# Mc/sec: 2950.83
//
Query:       EHT99475.1  [L=325]
Description: periplasmic-binding component of an ABC superfamily taurine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-23   81.6   0.9      1e-22   80.9   0.9    1.3  1  OpuAC           Substrate binding domain of ABC-type glycine 
    7.5e-22   78.2   2.8    2.4e-21   76.6   2.8    1.7  1  NMT1_2          NMT1-like family
    1.3e-19   71.1   0.0    1.8e-19   70.6   0.0    1.2  1  NMT1            NMT1/THI5 like
    4.2e-08   33.1   0.2    6.9e-08   32.4   0.2    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    0.00046   19.7   0.1     0.0061   16.0   0.0    2.5  3  SBP_bac_3       Bacterial extracellular solute-binding protei
     0.0065   16.0   0.0        2.2    7.7   0.0    2.2  2  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.9   3.5e-26     1e-22       2     229 ..      24     230 ..      23     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 3.5e-26
                 EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaeky 100
                 ++++++++ +e   +a+ + ++ ++ G++ve+ +++s+  +  alasGd+++   + ++ a +a ++ ++ +  l+   ++  gn e+l+v+      +
  EHT99475.1  24 NVTVAYQTSAEPAKVAQADNTFAKESGATVEWRKFDSGSGVLRALASGDVQIGNIGSSPLAVAATQQ-LPIEAFLL---ASQLGNSEALVVK------K 112
                 69***********************************999**************9999998755555.55333333...79**********8......5 PP

                 TTTBHHHHCTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-.T.TCEEEGSCEEEEHHHHHHHHHTTCSSEEEEETTSTHHHHTTEEE-B-T..T CS
       OpuAC 101 giksisDLkkpaedlelgakgeflgrpdgwgcekvtegllkaYgl.d.kvelvegseaamdaelyaaykrgepvvvyawtPdwaikkydlvvLedp..k 195
                 +i+  +DL            g+ ++ p  ++++++  ++lk++g+   +++lv    + + +++ aa++rg+++ +y+w+P     + d +vL+d    
  EHT99475.1 113 TITRPQDL-----------IGKRIAVPFISTTHYSLLAALKHWGIkPsQIQLV----NLQPPAIVAAWQRGDIDGAYVWAPAVNELEKDGTVLTDSsqV 196
                 68******...........79************************44566664....66666********************************99444 PP

                 STS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC-- CS
       OpuAC 196 glfppaynvvpvvrkefaekaPevaafLeklsld 229
                 g +++++  v+vvrk+fa+++P++ +++++ ++ 
  EHT99475.1 197 GRWGAPTLDVWVVRKDFAQQHPDIVTAFARSAIE 230
                 557888*****************99999885554 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   2.8     8e-25   2.4e-21       7     239 ..      22     236 ..      18     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 8e-25
      NMT1_2   7 qlklGfialtdaaplvvakekglfake.GltvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlaslnlnGqaitlsnklkdk 103
                 ++++ + + t a+p  va+ +++fake G tve++k+ s+++++++l++g++ ++ + + p+++++++ +   + +   las   n  a++++      
  EHT99475.1  22 AVNVTVAYQTSAEPAKVAQADNTFAKEsGATVEWRKFDSGSGVLRALASGDVQIGNIgSSPLAVAATQQL---PIEAFLLASQLGNSEALVVK------ 111
                 678888899******8888888888777****************************************99...88888888888889999997...... PP

      NMT1_2 104 kvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqel. 201
                   ++  + +dl+       + +iav+f  st+ + l  +L+  G++p ++++lv ++pp++va+ ++g+idg+ v +P  + +  e+ G  +++s ++ 
  EHT99475.1 112 --KTITRPQDLI-------GKRIAVPFI-STTHYSLLAALKHWGIKP-SQIQLVNLQPPAIVAAWQRGDIDGAYVWAPAVNEL--EKDGTVLTDSSQVg 197
                 ..4677777774.......457888775.6666788889********.******************************75555..56667999999**9 PP

      NMT1_2 202 .wkdhPekvlgvredfveknpntaralvkalleAtkwld 239
                  w      v +vr+df++++p+ + a+ +  +eA+k   
  EHT99475.1 198 rWGAPTLDVWVVRKDFAQQHPDIVTAFARSAIEAQKAYL 236
                 999977889**************************9765 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   5.9e-23   1.8e-19      15     215 ..      45     241 ..      31     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 5.9e-23
                 HHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHH CS
        NMT1  15 YFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgspfekallkalla 113
                 + ke G  Ve  +    s +++++asg++++g   +  l++a  ++lp+ ++    q  +s  +v k+  i++p+DL Gkri+++  + + + l a l+
  EHT99475.1  45 FAKESGATVEWRKFDSGSGVLRALASGDVQIGNIGSSPLAVAATQQLPIEAFLLASQLGNSEALVVKK-TITRPQDLIGKRIAVPFISTTHYSLLAALK 142
                 44788999999999999**********************************99888876666666655.6***************************** PP

                 HTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT-.-EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHHHHHHHHH CS
        NMT1 114 kdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegk.elrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlkkGyeyala 211
                 + g++ps+++lvn +    ++a  +g +D a+  +++  ++ele++g   ++  ++  +g p++  +v ++ +++++++p++v +F r   ++ ++ l+
  EHT99475.1 143 HWGIKPSQIQLVNLQPPAIVAAWQRGDIDGAY--VWAPAVNELEKDGTvLTDSSQVGRWGAPTL--DVWVVRKDFAQQHPDIVTAFARSAIEAQKAYLD 237
                 *******************99********998..555558888899985778889999998776..6999***************************** PP

                 SHHH CS
        NMT1 212 hPee 215
                 hPe+
  EHT99475.1 238 HPEQ 241
                 **96 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.2   2.3e-11   6.9e-08      22     205 ..      44     216 ..      27     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 2.3e-11
                     HHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT- CS
  Phosphonate-bd  22 yLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsS 115
                      + +e G +ve + +++ ++v +al++g v+i+ +g+++ ++a+ q+  +e+++  ++     + + +++v++  +i++ +dL gk+ia++  s 
      EHT99475.1  44 TFAKESGATVEWRKFDSGSGVLRALASGDVQIGNIGSSPLAVAATQQlPIEAFLLASQ----LGNSEALVVKK--TITRPQDLIGKRIAVPFIST 132
                     578999*********************************9998877669********8....66666899998..6**************98776 PP

                     TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEE.EEEEEEE--EEEEETTS-HH CS
  Phosphonate-bd 116 tsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrvi.assppipndpvvvrkelsee 205
                     t   +  +a L k  g++p+ +++ v  +  +a v+a  +gd+d a v+a a+++l+++g +  d+ +v  +  p    d++vvrk+  ++
      EHT99475.1 133 TH--YSLLAAL-KHWGIKPS-QIQLVNLQ-PPAIVAAWQRGDIDGAYVWAPAVNELEKDGTVLTDSSQVGrWGAPT--LDVWVVRKDFAQQ 216
                     65..6667779.9*****98.46777666.67777777********************999888777775133333..3777777776554 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0043        13     131     185 ..      44     105 ..      16     113 .. 0.65
   2 !   16.0   0.0     2e-06    0.0061      32     168 ..      45     185 ..      37     202 .. 0.71
   3 ?   -1.4   0.0      0.44   1.3e+03     114     206 ..     265     290 ..     221     303 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0043
                 C.......TSEEEEESSHHHHHHHHHTTSSSEE.EEEHHHHHHHHHHCCGCCEEEEECGGCEC CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 131 k.......gaeivefdtleealqaLkngrvdav.vadspvlaylvkknpdkkvvlveeplsse 185
                         ++e + fd+ + +l+aL++g v+   +++sp +  ++++ p + + l + +l  +
  EHT99475.1  44 TfakesgaTVEWRKFDSGSGVLRALASGDVQIGnIGSSPLAVAATQQLPIEAFLL-ASQLGNS 105
                 0222343477778999999999999999999754778888888888888777777.4444444 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2e-06
                 HHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTT........EEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  32 iakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReek........vdFsqpyfsagqvllvrkkdaskissiksladLkgkkvgvqagsta 121
                 +ak+ g +ve++++ s ++++ al+sg v   i++i  +p   +         +++    + ++++l+v+ k      +i+ ++dL gk+++v   st+
  EHT99475.1  45 FAKESGATVEWRKFdSGSGVLRALASGDVQ--IGNIGSSPLAVAAtqqlpieaFLLAS-QLGNSEALVVK-K------TITRPQDLIGKRIAVPFISTT 133
                 688889999999988999999999999554..44444433332222233333355553.68888899999.4......599999**********99776 PP

                 HHHHHHHHHC....TSEEEEESSHHHH.HHHHHTTSSSEEEEEHHHHHHHHH CS
                 xxxxxxxxxx....xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 122 eellkeelkk....gaeivefdtleea.lqaLkngrvdavvadspvlaylvk 168
                 +  l  +lk+      +i+ ++ ++ a ++a + g +d + +  p++++l k
  EHT99475.1 134 HYSLLAALKHwgikPSQIQLVNLQPPAiVAAWQRGDIDGAYVWAPAVNELEK 185
                 65555556667777445555665666648889******99998888887755 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.44
                 EEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 114 gvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseLrkainkal 206
                 g ++g t+ +                                                                   + ++  +L++ +nka+
  EHT99475.1 265 GLVKGNTYLT-------------------------------------------------------------------AAQQVAQLQQPVNKAI 290
                 4444444443...................................................................3333344444444444 PP

>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0022       6.6      81     129 ..     104     150 ..      64     174 .. 0.64
   2 !    7.7   0.0   0.00074       2.2     185     221 ..     206     245 ..     202     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0022
                     SSEEEEESS-CCC-SSS..T.EEEESTTTSHHHHHHHHHHCSTS----EE CS
  VitK2_biosynth  81 ygvllvskvpleelegel.gkrvalpgestTsvlLlrlllaeryglkprl 129
                      +  lv k+++++  ++l gkr+a+p  stT + Ll     +++g+kp+ 
      EHT99475.1 104 NSEALVVKKTITR-PQDLiGKRIAVPFISTTHYSLLAA--LKHWGIKPSQ 150
                     4444555566766.45788***************9865..4555777743 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00074
                     EEEEECCCHH...HHHHHHHHHHHHHHHHHHHSHHHHHHH CS
  VitK2_biosynth 185 lwvvrrdlaa...eaakeleealreSveyalahldevaey 221
                     +wvvr+d+a+   + ++++ +  +e+ +  l+h+++++++
      EHT99475.1 206 VWVVRKDFAQqhpDIVTAFARSAIEAQKAYLDHPEQWLKQ 245
                     8******999888999999999999999999***999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2679.52
//
Query:       EHT99476.1  [L=255]
Description: ATP-binding component of an ABC superfamily taurine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-29  102.1   0.0    4.7e-29  101.7   0.0    1.2  1  ABC_tran      ABC transporter
    1.1e-07   32.0   0.2     0.0096   15.8   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.3e-06   26.7   0.0    2.7e-05   24.5   0.0    1.9  1  AAA_22        AAA domain
      9e-05   22.4   0.0    0.00015   21.7   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
    0.00018   22.0   0.2    0.00029   21.3   0.2    1.4  1  AAA_16        AAA ATPase domain
    0.00041   20.3   0.0      0.011   15.7   0.0    2.5  3  ATPase_2      ATPase domain predominantly from Archaea
     0.0015   18.8   0.7      0.032   14.5   0.2    2.5  2  AAA_28        AAA domain
     0.0016   18.9   0.0      0.007   16.8   0.0    1.9  1  AAA           ATPase family associated with various cellular 
      0.002   17.6   0.1       0.75    9.2   0.0    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0027   17.6   0.8      0.031   14.2   0.1    2.2  2  NACHT         NACHT domain
     0.0032   18.0   0.0     0.0051   17.3   0.0    1.2  1  AAA_23        AAA domain
     0.0052   17.0   0.5      0.098   12.9   0.5    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0055   16.4   0.0      0.011   15.5   0.0    1.6  2  AAA_24        AAA domain
     0.0069   15.5   0.0      0.011   14.8   0.0    1.3  1  T2SSE         Type II/IV secretion system protein
     0.0081   16.1   0.0      0.016   15.1   0.0    1.4  1  Rad17         Rad17 P-loop domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.027   14.6   0.0    1.7  1  AAA_33        AAA domain
      0.013   15.2   0.2       0.04   13.6   0.2    1.8  1  AAA_30        AAA domain
      0.015   14.8   0.0       0.26   10.7   0.0    2.1  2  PhoH          PhoH-like protein
      0.019   14.7   0.0        0.1   12.3   0.0    1.8  2  AAA_15        AAA ATPase domain
      0.071   12.5   0.0       0.27   10.6   0.0    1.8  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.072   12.9   0.0       0.14   11.9   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      0.075   13.1   0.0       0.15   12.1   0.0    1.5  1  AAA_14        AAA domain
      0.077   13.0   0.1       0.15   12.1   0.1    1.4  1  AAA_5         AAA domain (dynein-related subfamily)
       0.12   12.1   0.0       0.23   11.2   0.0    1.5  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
       0.17   12.3   0.0       0.31   11.4   0.0    1.4  1  RNA_helicase  RNA helicase
       0.21   11.9   0.1       0.75   10.1   0.0    1.9  2  AAA_19        AAA domain
       0.22   10.7   0.0       0.61    9.2   0.0    1.6  2  NB-ARC        NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0     7e-32   4.7e-29       1     136 [.      17     156 ..      17     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 7e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+++sl ++ + +v+++G++G+GK+tLl+l+ag l  ++G+i ldgk ++        +  gv++q++ l p  +v +n              +++ + 
  EHT99476.1  17 LQDISLRVEDNALVVVLGPSGCGKTTLLNLIAGFLPVESGSISLDGKAIQG-----PGADRGVVFQHEGLLPWRNVLDNvafglqiagmarqPREALAR 110
                 789*********************************************999.....999***************************987754444449* PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++gl++ +++++     +LSgGq+qrv +aral+ +p llllDEp+
  EHT99476.1 111 QMIKNVGLEGAEKRHI----WQLSGGQRQRVGIARALAADPGLLLLDEPF 156
                 ****************....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   3.3e-05     0.022       2      36 ..      30      65 ..      29      96 .. 0.73
   2 !   15.8   0.0   1.4e-05    0.0096     231     298 ..     123     188 ..     102     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl.drdvegltdel 36
                 v+ Gp g+GK++LL ++ ++  +  +++  ++   
  EHT99476.1 30 VVVLGPSGCGKTTLLNLIAGFLPVeSGSISLDGKAI 65
                799***************998765533333333333 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.4e-05
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++ +++lS G+++  +++ al++++   +lll+DEp   L+    +   +ll +l +  g Q++l TH+
  EHT99476.1 123 KRHIWQLSGGQRQRVGIARALAADP---GLLLLDEPFGALDAFTREQMQTLLLRLWQdSGKQILLITHD 188
                 566899********99999999999...**************6666666777777777999*******8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     4e-08   2.7e-05       5     136 ..      27     192 ..      23     193 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 4e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..........erpevvfvtlpsst..sskdllrellralglelkaerlsseellealeqalrarav 91 
                   ++vv G+sG+GKTtll+ ++  l+ e+              ++++vvf      +   ++++l +++  l+  + a r+ +e+l +++ +++   ++
  EHT99476.1  27 NALVVVLGPSGCGKTTLLNLIAGFLPVESGSISldgkaiqgpgADRGVVFQHE---GllPWRNVLDNVAFGLQIAGMA-RQPREALARQMIKNVGLEGA 121
                 56789********************9988888899999988764444443333...3335888888888888877777.44444444333333332222 PP

      AAA_22  92 .........................ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLvGtpelrkl 136
                                          ++ll++DE    l+  + e++++L  +l   +++ + iL +t+++++ 
  EHT99476.1 122 ekrhiwqlsggqrqrvgiaralaadPGLLLLDEPFGaLDafTREQMQTLLLRLW--QDSGKQILLITHDIEEA 192
                 234444444444445555667789999******444365558999999977777..78999999999999875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.2e-07   0.00015      90     131 ..      17      59 ..       3      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-07
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  l++++ +++d  ++v++G+SG GK+tL+n +++ l ++ g++s
   EHT99476.1  17 LQDISLRVEDnALVVVLGPSGCGKTTLLNLIAGFLPVESGSIS 59 
                  667777777768999*****************99988888887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   4.3e-07   0.00029      25     117 ..      28     133 ..      16     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.3e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekd.ggiflrgkcdql...esaipy.....salaqalareellrqlldeaesaeleawrekleealaavpelaga 114
                  lv++ G+sG+GK++l++ ++  l  + g i l gk+ q    ++++ +     +++ ++l++  +  q++ +a++  +ea +++  ++++    l+ga
  EHT99476.1  28 ALVVVLGPSGCGKTTLLNLIAGFLPVEsGSISLDGKAIQGpgaDRGVVFqheglLPWRNVLDNVAFGLQIAGMARQ-PREALARQMIKNVG----LEGA 121
                 589*****************98777774455577777777544444444455546677777775555555555444.55555555555555....3444 PP

      AAA_16 115 ea.........s 117
                 e+         +
  EHT99476.1 122 EKrhiwqlsggQ 133
                 433333332222 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05     0.011      16      40 ..      23      47 ..      17      53 .. 0.85
   2 ?    1.2   0.0      0.44   2.9e+02     204     226 ..     108     133 ..      93     138 .. 0.74
   3 ?   -1.5   0.0       2.9   1.9e+03     106     131 ..     168     193 ..     156     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkei 40
                + e n  +++ Gp g+GKt+Ll+ i
  EHT99476.1 23 RVEDNALVVVLGPSGCGKTTLLNLI 47
                5567999***************976 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.44
    ATPase_2 204 gfkel.eel..skedfeeiyryvGGk 226
                 +++++ ++   +  ++  i+++ GG+
  EHT99476.1 108 LARQMiKNVglEGAEKRHIWQLSGGQ 133
                 45555333355999**********97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.9
    ATPase_2 106 ielllekikkkgkkiiiiiDelqkli 131
                  +lll+  +++gk+i +i  ++ ++i
  EHT99476.1 168 QTLLLRLWQDSGKQILLITHDIEEAI 193
                 45667777888999999999988887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   4.9e-05     0.032       2      20 ..      30      48 ..      29     156 .. 0.92
   2 ?    2.8   0.0      0.18   1.2e+02     133     162 ..     163     191 ..     158     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.9e-05
      AAA_28  2 ivitGgestGKTtlleaLa 20
                +v++G++++GKTtll+ +a
  EHT99476.1 30 VVVLGPSGCGKTTLLNLIA 48
                8**************9887 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      AAA_28 133 ereaiderlrealrelgipviivpsgdvee 162
                  re+++++l+ ++++ g +++ + + d+ee
  EHT99476.1 163 TREQMQTLLLRLWQDSGKQILLI-THDIEE 191
                 599*******************9.999987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-05     0.007       1      35 [.      30      66 ..      30     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-05
                EEEESSTTSSHHHHHHHHHHHHTHE..EEEEETTTCS CS
         AAA  1 vllyGppGtGKTllakavakelgve..fleisgsell 35
                v++ Gp G+GKT+l + +a  l ve   ++++g+ + 
  EHT99476.1 30 VVVLGPSGCGKTTLLNLIAGFLPVEsgSISLDGKAIQ 66
                5789***************998655223555555444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0069       4.6      24      45 ..      27      48 ..       9      66 .. 0.79
   2 !    9.2   0.0    0.0011      0.75     136     198 ..     128     188 ..      74     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0069
                SSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAil 45
                + + +++Gp G+GK+ ll+ i 
  EHT99476.1 27 NALVVVLGPSGCGKTTLLNLIA 48
                4467899********9998775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislr 198
                 +LSgG+++ v +a  +A        l llDe   aLD+  ++++ +ll +  ++   Q++ i+++
  EHT99476.1 128 QLSGGQRQRVGIARALAA----DPGLLLLDEPFGALDAFTREQMQTLLLRLWQDsgKQILLITHD 188
                 8**********9998875....35799**************9999998865554348*****997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   4.7e-05     0.031       2      21 ..      29      48 ..      28      52 .. 0.90
   2 ?    1.7   0.1      0.32   2.1e+02      38     115 ..      93     177 ..      84     190 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                lv++ G++G+GKTtLl  +a
  EHT99476.1 29 LVVVLGPSGCGKTTLLNLIA 48
                699*************9876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.32
                 EEEETTTTTTS-...-HCHHHCCCCTS--SSS-C...........CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCT CS
       NACHT  38 Fflslrelsrsgnarsladllfsqlpepaapvse...........vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirk 115
                 F l+ + + r+ ++  la+++ ++   ++a+ ++           v + ++  ++  Ll+lD   e    l++ ++++++tlL +l + 
  EHT99476.1  93 FGLQIAGMARQPRE-ALARQMIKNVGLEGAEKRHiwqlsggqrqrVGIARALAADPGLLLLD---EPFGALDAFTREQMQTLLLRLWQD 177
                 55555555555555.56666666666666666663333333333344444555555556665...455555555666777777777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.6e-06    0.0051      14      40 ..      19      48 ..       9      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.6e-06
      AAA_23 14 eidF...skgltlItGpNGaGKTTildAik 40
                +i +   ++ l+++ Gp G+GKTT+l+ i 
  EHT99476.1 19 DISLrveDNALVVVLGPSGCGKTTLLNLIA 48
                56666678889****************996 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.5   0.00015     0.098      62      88 ..     145     171 ..     101     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllell 88 
                  +++l++LDE F+ lD+ +++++  ll
  EHT99476.1 145 ADPGLLLLDEPFGALDAFTREQMQTLL 171
                 3589*************9999987765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-05     0.011       5      48 ..      30      83 ..      26     122 .. 0.81
   2 ?   -2.5   0.0       5.5   3.6e+03     110     134 ..     166     191 ..     162     193 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
      AAA_24  5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie.............s 48
                +++ Gpsg GKTtl++ +   + f+ +e G+ sld++ ++ +               
  EHT99476.1 30 VVVLGPSGCGKTTLLNLI---AGFLPVESGSISLDGKAIQGPGadrgvvfqhegllP 83
                89****************...999*********999988755455555555555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.5
      AAA_24 110 efrrllkk.lqelrknvifiahektr 134
                 +++ ll +  q+ +k++ +i h  ++
  EHT99476.1 166 QMQTLLLRlWQDSGKQILLITHDIEE 191
                 55555555256777799999997665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.011     122     158 ..      20      56 ..       5      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
       T2SSE 122 lrkavrerglilvsGgTgsGKttllyallkeinksde 158
                 ++  v+ + l++v G+ g GKttll+ +  +++ ++ 
  EHT99476.1  20 ISLRVEDNALVVVLGPSGCGKTTLLNLIAGFLPVESG 56 
                 5566889999*****************9999987655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05     0.016      38      66 ..      20      48 ..      14      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLs 66
                 +L  + + ++++ GPsGCgk+t ++ ++
  EHT99476.1 20 ISLRVEDNALVVVLGPSGCGKTTLLNLIA 48
                566677778999***********999876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.1e-05     0.027       1     103 [.      29     186 ..      29     194 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.1e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklg..avllssdt..............................................lrrrlfg..tdqqsktdyt 49 
                 lv++ G++G+GK+tl+  ++  l+     +s d                                               +r+++++   +   k+   
  EHT99476.1  29 LVVVLGPSGCGKTTLLNLIAGFLPveSGSISLDGkaiqgpgadrgvvfqhegllpwrnvldnvafglqiagmarqprealARQMIKNvgLEGAEKRHIW 127
                 799************998887776442224444455777777777777777777777777777777777777777777743333333332222222223 PP

      AAA_33  50 rvldrlyqilnelarkalsagrnvildat......nlsrrerarflklarrlgvpvrivv 103
                 +++   +q++ ++ar  ++  + ++ld +      +++++ +  +l+l+++ g ++++++
  EHT99476.1 128 QLSGGQRQRV-GIARALAADPGLLLLDEPfgaldaFTREQMQTLLLRLWQDSGKQILLIT 186
                 3444455565.7777666777777777777766655556666677777777775555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   6.1e-05      0.04      16      47 ..      25      63 ..      20     188 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.1e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa.g......g 47
                +++ ++v+ Gp G GKtt+l+ ++  +  + g      +
  EHT99476.1 25 EDNALVVVLGPSGCGKTTLLNLIAGFLPVEsGsisldgK 63
                456799****************99887776445555550 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.26      16      36 ..      24      44 ..      14      59 .. 0.76
   2 ?    1.8   0.0       0.2   1.4e+02     131     155 ..     162     189 ..     146     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
                HHH-SEEEEE--TTSSTTHHH CS
        PhoH 16 lkkndivfaiGpaGtGKtyla 36
                +++n +v+++Gp+G+GKt l 
  EHT99476.1 24 VEDNALVVVLGPSGCGKTTLL 44
                56899************8653 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.2
                 --HHHHHHHHTTB-TT-.E..EEEEE-- CS
        PhoH 131 ttkeqmkmfltRlGens.k..vvvtGdv 155
                 +t+eqm+++l Rl ++s k  + +t+d+
  EHT99476.1 162 FTREQMQTLLLRLWQDSgKqiLLITHDI 189
                 799**********888732224456665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015       0.1      14      48 ..      17      52 ..      16      78 .. 0.89
   2 ?   -0.0   0.0      0.84   5.6e+02     341     364 ..     164     187 ..     141     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlFln 48
                l+d+++ ++++ l v+ G+ ++GK+++l+++  Fl 
  EHT99476.1 17 LQDISLRVEDNaLVVVLGPSGCGKTTLLNLIAGFLP 52
                68899999999999*****************98885 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.84
      AAA_15 341 qkvlikllkelandnktQviitTH 364
                  +++  ll++l +d+ +Q+++ TH
  EHT99476.1 164 REQMQTLLLRLWQDSGKQILLITH 187
                 56788899999999999******* PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00041      0.27      25      60 ..      30      65 ..      18      85 .. 0.86
   2 ?   -1.0   0.0       1.5   9.8e+02     103     114 ..     143     154 ..     127     183 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
  Mg_chelatase 25 lllvGppGsGKtmlakrlpsllpplseeealevaki 60
                  ++++Gp+G+GKt l + +++ lp  s + +l+ ++i
    EHT99476.1 30 VVVLGPSGCGKTTLLNLIAGFLPVESGSISLDGKAI 65
                  6789*******************8887777766665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
  Mg_chelatase 103 slahnGvLfLDE 114
                     a  G+L+LDE
    EHT99476.1 143 LAADPGLLLLDE 154
                   346789999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.14      19      39 ..      22      44 ..      15      54 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      AAA_29 19 idlkg..atlltGpsGsGKSTll 39
                +++++   +++ GpsG GK+Tll
  EHT99476.1 22 LRVEDnaLVVVLGPSGCGKTTLL 44
                444443467889**********9 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022      0.15       3      23 ..      28      48 ..      26      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
      AAA_14  3 kilvitGaRrvGKTtllkqli 23
                 ++v+ G+  +GKTtll+ ++
  EHT99476.1 28 ALVVVLGPSGCGKTTLLNLIA 48
                6799************98766 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00022      0.15       2      24 ..      30      52 ..      29      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
                EEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5  2 vlLvGppGtgKselaerlaaaln 24
                v+++Gp+G+gK++l   +a +l 
  EHT99476.1 30 VVVLGPSGCGKTTLLNLIAGFLP 52
                7899*************998874 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00035      0.23      29      59 ..      23      53 ..      14      72 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
      RuvB_N 29 reealdhvllyGpPGlGkttlakiiakelgv 59
                r e    v++ Gp G Gkttl ++ia  l v
  EHT99476.1 23 RVEDNALVVVLGPSGCGKTTLLNLIAGFLPV 53
                6666777999***************987665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00047      0.31       1      19 [.      30      48 ..      30      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00047
  RNA_helicase  1 iwlyGpsgeGKStlakeLa 19
                  +++ Gpsg+GK+tl + +a
    EHT99476.1 30 VVVLGPSGCGKTTLLNLIA 48
                  6899**********99865 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0011      0.75      10      32 ..      27      49 ..      18      60 .. 0.82
   2 ?   -1.8   0.0       5.4   3.6e+03     116     135 ..     165     185 ..     145     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
      AAA_19 10 ekvllvtaGpGtGKTrvlkhiva 32
                + +++v+++ G+GKT++l+ i  
  EHT99476.1 27 NALVVVLGPSGCGKTTLLNLIAG 49
                67899************998765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.4
      AAA_19 116 elqyrLlkallgek.kklllv 135
                 e++++Ll +l +++ k++ll+
  EHT99476.1 165 EQMQTLLLRLWQDSgKQILLI 185
                 445555555444444777665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00092      0.61      21      40 ..      28      47 ..      16      50 .. 0.82
   2 ?   -1.8   0.0       2.2   1.4e+03      67     110 ..     107     153 ..     101     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00092
                EEEEEEESTTSSHHHHHHHH CS
      NB-ARC 21 lvvalvGmgGvGKttlakqi 40
                 +v + G  G+GKttl++ i
  EHT99476.1 28 ALVVVLGPSGCGKTTLLNLI 47
                47999***********8755 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
                 HHHHXXHHHHHCCCTTSSSS-STTS...HHHHHHHHCCCTTEEEEEE CS
      NB-ARC  67 eiletilkeLslseddleekeeves...lkrklvrlLltkrfllvlD 110
                  + ++++k+++l+ ++  +  +          + r+L     ll+lD
  EHT99476.1 107 ALARQMIKNVGLEGAEKRHIWQLSGgqrQRVGIARALAADPGLLLLD 153
                 56677777777777777666655545545666888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 2098.46
//
Query:       EHT99477.1  [L=276]
Description: membrane component of an ABC superfamily taurine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-22   79.8  13.9      2e-22   79.8  13.9    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.5     0.011     2e+02      18      63 ..      15      54 ..       3      97 .. 0.70
   2 !   79.8  13.9   1.1e-26     2e-22       1     181 [.      99     270 ..      99     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.011
  BPD_transp_1 18 kllrpliivllslPsfvlaillvlvfvilsilghlilpviilllls 63
                  + lr+ + ++ +l ++ l++ll+       ++  + l++i+ l+l 
    EHT99477.1 15 RRLRWPFSLTATLSTVSLLVLLF------IWWSVTTLGLIAPLFLP 54
                  45555556666666666666666......55555555555555554 PP

  == domain 2  score: 79.8 bits;  conditional E-value: 1.1e-26
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   gi++Gi ++   + +l+ l++pli++ + +P+++ ++l+v       ++g + ++ i+l++l ++++++l + a++r+ ++   +aa  lGa+rwq+
    EHT99477.1  99 GIPVGIAMG--VSPVLRALIDPLIELYRPVPPLAYLPLMV------IWFGIGETSKILLITLAIFAPIVLSTVAGVRNAQQVRLRAAASLGANRWQR 187
                   89*******..889**************************......9************************************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   +r v+lP alp i+tgl++ +g  +   v++e++++  Glg ++ +a +   ++  + +g+++++i+   l l +++lqr l p
    EHT99477.1 188 LRWVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVL-AGIAVIAIVACSLELGLRALQRRLTP 270
                   ******************************************************999.99999999988888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1983.00
//
Query:       EHT99478.1  [L=279]
Description: taurine dioxygenase, 2-oxoglutarate-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-64  217.4   3.0    3.5e-64  217.2   3.0    1.0  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.096   12.6   0.0       0.17   11.8   0.0    1.4  1  DUF3746   Protein of unknown function (DUF3746)


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2   3.0   3.9e-68   3.5e-64       2     268 .]       7     272 ..       6     272 .. 0.94

  Alignments for each domain:
  == domain 1  score: 217.2 bits;  conditional E-value: 3.9e-68
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttll 98 
                 ++pl p +ga+  ++d+s++  l+d+++e+l  +l++++v+++r++ ++peq++++a rfG l+++p +++ +  +e+ + ++   + d+++    + +
  EHT99478.1   7 ITPLGPFIGAQvgNLDVSRP--LSDAQFEQLYHALLRHQVLFLRDQAITPEQHRALAIRFGDLHIHPVYPHAPGVEEIIVLDT---HQDNPP---DNDN 97 
                 789********666666665..**********************************************************776...333333...2345 PP

        TauD  99 wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrg......gglrteqelpavdkhprtghpvvrthpvlt 191
                 wHtD ++ ++pp + lL +++ p+ GG+t++ +g aay+aL++  + ll  l a++++++++        ++++ + ++a +k p+++hpv+rthpv +
  EHT99478.1  98 WHTDVTFIQTPPAVALLASKVLPEAGGDTLWTSGIAAYEALSAPFKTLLSELYAEHDFTKSFPeykhrkTEEEHQRWRQAAAKNPPVQHPVIRTHPV-S 195
                 ********************************************************************999999999*******************8.* PP

        TauD 192 grkallvnppfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrt.afdegeeRhllrcy 268
                 g+kal+vn+ f+tri  l+++es++ll +l+++ ++pef++r++wq++dl+i+dNr ++H +  ++ +  +R ++r++
  EHT99478.1 196 GKKALFVNEGFTTRILTLSQKESDALLGFLFAHSTKPEFQVRWRWQPNDLAIWDNRVTQHYANaDYYPA-RRVMQRAT 272
                 ***************************************************************999666.*****986 PP

>> DUF3746  Protein of unknown function (DUF3746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.17      20      34 ..     197     211 ..     188     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
     DUF3746  20 kKhifdNstyTTrtg 34 
                 kK+ f+N  +TTr++
  EHT99478.1 197 KKALFVNEGFTTRIL 211
                 9************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2235.19
//
Query:       EHT99479.1  [L=634]
Description: ATP-binding components of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-50  169.2   6.6    1.9e-24   86.7   0.0    3.8  4  ABC_tran       ABC transporter
    3.6e-28   97.4   5.5    3.6e-28   97.4   5.5    3.2  2  ABC_tran_Xtn   ABC transporter
    6.7e-16   59.0  14.2    0.00067   19.6   0.1    4.4  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      1e-08   34.9   1.9      0.077   12.4   0.0    4.3  3  SMC_N          RecF/RecN/SMC N terminal domain
    4.1e-07   30.1   1.0     0.0077   16.2   0.1    2.9  2  RsgA_GTPase    RsgA GTPase
    5.5e-07   29.7   2.6     0.0049   16.9   0.0    3.3  2  MMR_HSR1       50S ribosome-binding GTPase
    7.5e-06   25.6   2.1      0.055   13.2   0.2    2.6  2  AAA_29         P-loop containing region of AAA domain
    1.8e-05   24.9  12.2    1.8e-05   24.9  12.2    4.2  4  ABC_tran_CTD   ABC transporter C-terminal domain
    4.5e-05   22.8   1.6      0.071   12.3   0.1    2.8  3  KAP_NTPase     KAP family P-loop domain
    8.8e-05   23.1   2.8       0.58   10.7   0.0    3.7  3  AAA_18         AAA domain
    0.00015   22.2  11.3      0.019   15.3   0.2    3.4  3  AAA_16         AAA ATPase domain
    0.00055   20.3   0.4        1.3    9.5   0.1    2.5  2  RNA_helicase   RNA helicase
    0.00078   19.4   3.4        1.7    8.6   0.1    3.4  3  NACHT          NACHT domain
     0.0017   18.7   0.1          1    9.8   0.0    2.9  2  AAA            ATPase family associated with various cellular
     0.0025   17.5   0.2       0.32   10.6   0.0    2.6  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
     0.0036   16.3   9.6      0.097   11.6   0.2    3.1  3  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
     0.0067   15.6   2.6        2.1    7.4   0.5    3.2  3  DUF815         Protein of unknown function (DUF815)
     0.0079   15.4   0.1          1    8.5   0.0    2.6  2  NB-ARC         NB-ARC domain
  ------ inclusion threshold ------
      0.021   15.1   3.1        5.1    7.3   0.0    3.5  3  AAA_28         AAA domain
      0.026   14.1   8.1       0.32   10.5   0.0    3.9  4  AAA_25         AAA domain
      0.032   14.1   2.0        1.9    8.4   0.1    2.6  2  MobB           Molybdopterin guanine dinucleotide synthesis p
      0.041   13.2   5.1        1.8    7.8   0.1    2.9  3  Zeta_toxin     Zeta toxin
      0.057   13.6   1.7          2    8.7   0.1    3.9  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.065   13.5   1.4         13    6.0   0.1    3.2  2  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.066   13.1   0.2         15    5.4   0.0    2.6  2  Rad17          Rad17 P-loop domain
      0.067   13.1   1.0        5.9    6.8   0.1    2.7  2  NTPase_1       NTPase
      0.074   12.7   0.3      0.074   12.7   0.3    4.4  5  AAA_15         AAA ATPase domain
       0.13   11.8   0.3        4.7    6.7   0.0    2.4  2  FeoB_N         Ferrous iron transport protein B
       0.14   11.8   6.1        4.4    7.0   0.1    3.3  3  AAA_24         AAA domain
       0.16   11.7   4.2        4.1    7.2   0.3    2.8  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
       0.17   12.2   7.9        1.5    9.1   0.0    3.8  4  AAA_22         AAA domain
       0.17   12.3   0.2       0.17   12.3   0.2    4.0  3  AAA_23         AAA domain
       0.26   11.4   8.9       0.91    9.6   2.6    2.9  2  DUF1192        Protein of unknown function (DUF1192)
       0.33   11.0   6.2      0.072   13.1   1.2    2.1  2  NAD_binding_9  FAD-NAD(P)-binding
       0.37   10.8   1.6        5.7    7.0   0.2    2.6  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.94    9.5   5.1        7.7    6.5   0.1    2.9  3  AAA_5          AAA domain (dynein-related subfamily)
        2.7    8.1  10.4          7    6.8   0.0    3.9  4  AAA_33         AAA domain
        4.4    7.3  16.0       0.21   11.7   0.4    3.9  4  DUF87          Helicase HerA, central domain
        4.9    6.6  11.8        6.1    6.3   0.3    2.2  2  Exonuc_VII_L   Exonuclease VII, large subunit
          6    7.4  29.0       0.25   11.9  17.8    2.5  2  APG6_N         Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   6.1e-26   2.7e-23       1     137 []      17     178 ..      17     178 .. 0.80
   2 ?   -1.0   0.2       5.3   2.4e+03      43      99 ..     218     273 ..     201     296 .. 0.49
   3 !   86.7   0.0   4.2e-27   1.9e-24       1     137 []     328     459 ..     328     459 .. 0.88
   4 ?   -0.0   0.5       2.6   1.1e+03      58      80 ..     549     605 ..     503     627 .. 0.51

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 6.1e-26
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren................ 79 
                 l+n + ++++g+kv++vG+nG+GKStLl+ll g+ + ++G+ ++ g+ +      ++   +++ + ++   ++  ++l+                    
  EHT99479.1  17 LDNATATINPGQKVGLVGKNGCGKSTLLSLLKGEITSDAGSFTFPGNWSLAwvnqETPALSQAALDYVIDGDREYRHLE---Aelaeanirndgnaial 112
                 7999**************************************9998777665664555556666677766655554443...12345679988999999 PP

                 ...........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                            + +++++ +l+ lg ++   + +++  s +SgG++ r+ la+all++++llllDEpt+
  EHT99479.1 113 ihgkldtiqawTIQSRASSLLHGLGFSQ---EQLQRPVSDFSGGWRMRLNLAQALLCRSDLLLLDEPTN 178
                 9999888877777777888888888666...5555556******************************8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 5.3
                 EETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTCHHHHHHHSTTGGTTC CS
                 xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  43 lldgkdlke...qeleslrkeigvlpqepqlfpeltvren............esdeeiekalsklglkelkd 99 
                 +++++ ++e   +  ++ r++ + l q++ l +    +e+            +              + +k+
  EHT99479.1 218 HIEQQTMTEytgNYSSFERQRGAKLAQQQALYQSQ--QEKvahlqkyidrfrA--------------QATKA 273
                 45544444444444444444444555553333333..1112222333333331..............22222 PP

  == domain 3  score: 86.7 bits;  conditional E-value: 4.2e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHHHHHTCHHHHHHHSTTGGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpelt.vrenesdeeiekalsklglkel 97 
                 l+ ++l+l +g++++++G+nGaGKStL+kllag+l  ++Gei l  g +l +    ++++++++l  +++  ++l+ ++ +  ++++ ++l  +g +++
  EHT99479.1 328 LNAIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAAKAGEIGLAkGIKLGY----FAQHQLEYLRADESPLQHLSrLAPKVLEQQLRDYLGGFGFQGD 422
                 68899*************************************8886888888....9999999999997666666536666899999999999998885 PP

                 TCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  98 kdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 k t v   ++ +SgG+k r++la +++++p+llllDEpt+
  EHT99479.1 423 KVTEV---TERFSGGEKARLVLALIVWQRPNLLLLDEPTN 459
                 55555...9******************************8 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 2.6
                 CHCEEEE-SS--S-TTSBHHHH..................................H CS
                 xxxxxxxxxxxxxxxxxxxxxx..................................x RF
    ABC_tran  58 rkeigvlpqepqlfpeltvren..................................e 80 
                 r+e +  +q++ l +e++  e+                                  +
  EHT99479.1 549 RREAELRTQTQPLRKEIEKLEKqmakwqaqladaehlladsalyehsrkadltaalQ 605
                 333333333333333333222222222222222223444444444444444444443 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   5.5   8.1e-31   3.6e-28       1      80 [.     217     296 ..     217     302 .. 0.93
   2 ?    6.4   5.3     0.021       9.3       3      76 ..     500     574 ..     498     584 .. 0.81

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 8.1e-31
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpeekk 80 
                   +++e++++teY+GnYs++ +++ ++l+qqq+ y+ qq+++++l+++I+rfra+a+kakqaqsr+k+Le++e i++ + ++
    EHT99479.1 217 IHIEQQTMTEYTGNYSSFERQRGAKLAQQQALYQSQQEKVAHLQKYIDRFRAQATKAKQAQSRIKMLERMELIAPAHVDN 296
                   69***********************************************************************8885554 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.021
  ABC_tran_Xtn   3 lengklteYkGnYseyleekeerleqq.qkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekp 76 
                   +++g++  ++G+ ++y +     ++qq q +++ +q+  +  ++  ++ r +a   +q q  +k +eklek  ++
    EHT99479.1 500 VHDGSVDVFPGDLEDYQQWLSDLQKQQtQNEAAPKQDNGNSAQARKDQKRREAELRTQTQPLRKEIEKLEKQMAK 574
                   578999**********9987776666614555668888899999999999999****************996554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     2e-05     0.009       3      27 ..      31      49 ..      30      75 .. 0.76
   2 !   19.6   0.1   1.5e-06   0.00067     232     302 ..     145     209 ..     135     210 .. 0.85
   3 !   12.5   0.9   0.00021     0.096       3      20 ..     342     359 ..     341     373 .. 0.90
   4 !   18.0   0.5   4.5e-06     0.002     184     302 ..     380     490 ..     369     491 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarldr 27
                +l+G+Ng+GKS+LL +l+      +
  EHT99479.1 31 GLVGKNGCGKSTLLSLLK------G 49
                69**************94......3 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.5e-06
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                 +p++++S G +  l l+ all +    +lll+DEp n+L+  ++  l ++lk+ +     +il +H+  +l
  EHT99479.1 145 RPVSDFSGGWRMRLNLAQALLCRS---DLLLLDEPTNHLDLDAVIWLERWLKSYEG---TLILISHDRDFL 209
                 566777777666679999999988...9***********************99999...*******96555 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00021
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +l G+Ng+GKS+L+++l 
  EHT99479.1 342 GLLGRNGAGKSTLIKLLA 359
                 699************995 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 4.5e-06
      AAA_21 184 llqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparel.SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllel 281
                 ++q+ +  l+ +e++l+ l    ++  + ++r+   ++  +   +++ + ++e  S G k  l l++++++++    lll+DEp n+L+  +   l e 
  EHT99479.1 380 FAQHQLEYLRADESPLQHLSRLAPKVLEQQLRD---YLGGFGFQGDKVTEVTERfSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMRQALTEA 472
                 555555555555555555554444444444443...4444444444444444444999998888888888888...89********************* PP

      AAA_21 282 lkelsrngaQviltTHSplll 302
                 l + +     +++++H+ +ll
  EHT99479.1 473 LIDFEG---ALVVVSHDRHLL 490
                 *88877...8*******9997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00027      0.12      27     214 ..      30     222 ..      11     227 .. 0.67
   2 ?    4.5   0.1     0.045        20      28      42 ..     342     356 ..     328     369 .. 0.84
   3 !   12.4   0.0   0.00017     0.077     136     206 ..     430     495 ..     382     504 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE....EE-H. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxx. RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk....evtk. 120
                   +vG+NG+GKs ll  ++  +  ++  ++      +l   ++e +++++a ++ ++d + +  + e+e    + ++ ++g+    i gk    ++   
  EHT99479.1  30 VGLVGKNGCGKSTLLSLLKGEITSDAG-SFTFPGNWSLAWVNQETPALSQAALDYVIDGDREYRHLEAE--LAEANIRNDGNAIALIHGKldtiQAWTi 125
                 4689**********9999988886665.66666666666656789999999999988666655222222..2233334444444444444111133222 PP

                 .HHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEE CS
                 .xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
       SMC_N 121 .kevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvg 210
                  +  s+ll+  g+s+e        +SgG      + L +A     ++ l llDe   +LD   v  + + lk+ +    +i is+++++l  + dk++ 
  EHT99479.1 126 qSRASSLLHGLGFSQEqlqrpvsDFSGGW----RMRLNLAQALLCRSDLLLLDEPTNHLDLDAVIWLERWLKSYE--GTLILISHDRDFLDPVvDKIIH 218
                 36677888888888884444444445554....478888888888999999999999999999999999999888..7899999999999876688888 PP

                 EEEE CS
                 xxxx RF
       SMC_N 211 vtkv 214
                 + ++
  EHT99479.1 219 IEQQ 222
                 7774 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.045
                 EEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlld 42 
                  ++G+NG+GKs l+ 
  EHT99479.1 342 GLLGRNGAGKSTLIK 356
                 579********9986 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00017
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.d 206
                  +SgGek+ + laL+      ++  l llDe   +LD   ++++ e l   +    ++v+s+++++l+   d
  EHT99479.1 430 RFSGGEKARLVLALI----VWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE--GALVVVSHDRHLLRATtD 495
                 68*****97777777....6788889********************999888..778999999988876544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1    0.0005      0.23     100     125 ..      28      53 ..      12      78 .. 0.85
   2 !   16.2   0.1   1.7e-05    0.0077     100     130 ..     339     369 ..     314     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0005
                  SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelel 125
                  + + lvG+ G GKStL+  l++e + 
   EHT99479.1  28 QKVGLVGKNGCGKSTLLSLLKGEITS 53 
                  66779***************999665 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.7e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgev 130
                  + + l+G  G+GKStLi+ l++el +k ge+
   EHT99479.1 339 SRIGLLGRNGAGKSTLIKLLAGELAAKAGEI 369
                  666799********************99998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   0.00054      0.24       1      23 [.      29      52 ..      29      62 .. 0.82
   2 !   16.9   0.0   1.1e-05    0.0049       1      36 [.     340     375 ..     340     496 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00054
                EEEEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge.k 23
                +v++vG+   GKStL++ l ge +
  EHT99479.1 29 KVGLVGKNGCGKSTLLSLLKGEiT 52
                699**************9998744 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.1e-05
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdi 36 
                 +++++Gr  +GKStLi+ l ge a  + + g  + i
  EHT99479.1 340 RIGLLGRNGAGKSTLIKLLAGELAAKAGEIGLAKGI 375
                 699******************966555555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   0.00012     0.055      13      39 ..      18      44 ..      15      49 .. 0.87
   2 !   11.3   0.1    0.0005      0.22      26      39 ..     342     355 ..     330     362 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ t++i++ + + l+G++G GKSTll
  EHT99479.1 18 DNATATINPGQKVGLVGKNGCGKSTLL 44
                66788899888999************8 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0005
      AAA_29  26 lltGpsGsGKSTll 39 
                  l G++G+GKSTl+
  EHT99479.1 342 GLLGRNGAGKSTLI 355
                 489**********8 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.72   3.2e+02      25      54 ..      92     121 ..      88     123 .. 0.79
   2 ?    0.1   0.8       2.1   9.5e+02      33      55 ..     245     268 ..     236     284 .. 0.69
   3 ?   -0.3   1.1       2.9   1.3e+03      14      56 ..     509     551 ..     505     560 .. 0.60
   4 !   24.9  12.2     4e-08   1.8e-05       7      66 ..     562     623 ..     557     626 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.72
  ABC_tran_CTD  25 aeleaeladpelysdpeklaelsaeleele 54 
                     leaela++++ +d +++a ++ +l++++
    EHT99479.1  92 RHLEAELAEANIRNDGNAIALIHGKLDTIQ 121
                   568999999998888888888888888877 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 2.1
  ABC_tran_CTD  33 dpely.sdpeklaelsaeleelea 55 
                   + +ly s++ek+a l++ +++ +a
    EHT99479.1 245 QQALYqSQQEKVAHLQKYIDRFRA 268
                   455663555888888877666555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.9
  ABC_tran_CTD  14 eaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleae 56 
                   + ++e  ++ +++l+++  ++e   +++  + ++a++++ + e
    EHT99479.1 509 PGDLEDYQQWLSDLQKQQTQNEAAPKQDNGNSAQARKDQKRRE 551
                   5667777777778888777777664444444444444444433 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 4e-08
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleaeladpelysdp..eklaelsaeleeleaeLeelyerWee 66 
                   ++e+e+le+++++ ++++a+ e  lad +ly+++  + l+++ ++++e +++Lee ++ W+ 
    EHT99479.1 562 RKEIEKLEKQMAKWQAQLADAEHLLADSALYEHSrkADLTAALQKQAESKSALEEVEMAWLD 623
                   89*****************************8886677**********************85 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00016     0.071      17      49 ..      24      89 ..      14     282 .. 0.65
   2 !    7.7   0.1    0.0041       1.8      17      47 ..     335     365 ..     327     411 .. 0.84
   3 ?   -1.6   0.1       2.7   1.2e+03     259     295 ..     527     576 ..     468     596 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
  KAP_NTPase 17 latpivvgLygkWGsGKssllnkledelkefa.................................k 49
                  ++  vgL gk G+GKs+ll +l+ e+ + a                                  
  EHT99479.1 24 INPGQKVGLVGKNGCGKSTLLSLLKGEITSDAgsftfpgnwslawvnqetpalsqaaldyvidgdR 89
                467888**********************99976666665555555555555555555555555441 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0041
  KAP_NTPase  17 latpivvgLygkWGsGKssllnkledelkef 47 
                 l +++ +gL g  G+GKs+l+++l  el  +
  EHT99479.1 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAAK 365
                 5678899*****************9998766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.7
  KAP_NTPase 259 vlmeaveaseettesesrdetlgnsas.............ksnlqlaldl 295
                  ++ea ++++++ +++ r+++  ++a              k ++q+a+++
  EHT99479.1 527 TQNEAAPKQDNGNSAQARKDQKRREAElrtqtqplrkeieKLEKQMAKWQ 576
                 33333333333333333333333333333333344433334444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0017      0.75       1      62 [.      30      86 ..      30     122 .. 0.71
   2 !   10.7   0.0    0.0013      0.58       1      48 [.     341     386 ..     341     415 .. 0.69
   3 ?   -1.6   0.1         8   3.6e+03      44      66 ..     598     627 ..     558     630 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0017
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklld 62
                ++l G+ G+GK+tl   L+ +       ++  + ++++l + ++   e+  l +  ld+++d
  EHT99479.1 30 VGLVGKNGCGKSTLLSLLKGEI--TSDAGSFTFPGNWSLAWVNQ---ETPALSQAALDYVID 86
                6899**************6664..55556666666666666666...555555555555555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0013
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealde 48 
                 I+l G  G+GK+tl k L+ +l    + +++   +g+ l+++++   e
  EHT99479.1 341 IGLLGRNGAGKSTLIKLLAGEL--AAKAGEIGLAKGIKLGYFAQHQLE 386
                 8999**************8887..555555555555555555543333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 8
      AAA_18  44 e.......aldeskrldedkldklldalee 66 
                 +       +  esk + e++ +++lda e+
  EHT99479.1 598 AdltaalqKQAESKSALEEVEMAWLDAQEK 627
                 223333444577888888888888877766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   4.3e-05     0.019      18      91 ..      23      86 ..       9     313 .. 0.77
   2 !   13.5   0.2   0.00016     0.071      27     126 ..     341     476 ..     325     510 .. 0.64
   3 ?   -2.1   1.8       9.9   4.4e+03     105     107 ..     554     575 ..     487     626 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.3e-05
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaes 91
                +++ g+   v l+G  G+GKs+l+  l+ +++ d g f + g++           ++++ +   l ++ ld   +
  EHT99479.1 23 TINPGQ--KVGLVGKNGCGKSTLLSLLKGEITSDAGSFtFPGNWSLA--------WVNQETP-ALSQAALDYVID 86
                455554..47799*********************6555588888888........4444433.333333333222 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00016
      AAA_16  27 vllsGesGvGKsslvrellralekd..........g.giflrgkcdql.esaipysalaqalareellrqllde..aesaeleawrekleeala..... 106
                 + l G  G GKs+l++ l+ +l ++          + g+f++ + + l   + p+++l +++   ++l+q l++       ++   +k +e+++     
  EHT99479.1 341 IGLLGRNGAGKSTLIKLLAGELAAKageiglakgiKlGYFAQHQLEYLrADESPLQHLSRLA-P-KVLEQQLRDylG---GFGFQGDKVTEVTErfsgg 434
                 5589***************9999999999999999668998888888844447887788888.5.677777777331...2333333333333345555 PP

      AAA_16 107 ......................avpelagaeasrllellkrl 126
                                       ++++l+ + +++l e+l ++
  EHT99479.1 435 ekarlvlalivwqrpnlllldePTNHLDLDMRQALTEALIDF 476
                 555566666677666666555555555555554444444444 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 9.9
      AAA_16 105 la...................a 107
                 l+                    
  EHT99479.1 554 LRtqtqplrkeieklekqmakW 575
                 2232222222222222222221 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0056       2.5       3      24 ..      32      53 ..      30      77 .. 0.79
   2 !    9.5   0.1    0.0029       1.3       3      26 ..     343     366 ..     341     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0056
  RNA_helicase  3 lyGpsgeGKStlakeLakallk 24
                  l+G++g+GKStl   L  ++++
    EHT99479.1 32 LVGKNGCGKSTLLSLLKGEITS 53
                  78***********998877774 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0029
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l G++g GKStl+k La +l+ k 
    EHT99479.1 343 LLGRNGAGKSTLIKLLAGELAAKA 366
                   78*****************99776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0037       1.7       4      21 ..      31      48 ..      28      75 .. 0.85
   2 ?    1.4   0.1      0.61   2.7e+02      63     126 ..     141     203 ..     119     245 .. 0.71
   3 !    8.3   0.1    0.0044         2       4      27 ..     342     365 ..     339     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0037
                EEEC-TTTCHHHHHHHHH CS
       NACHT  4 ilqGeaGsGKTtLlqkla 21
                 l G++G+GK+tLl  l 
  EHT99479.1 31 GLVGKNGCGKSTLLSLLK 48
                589**********98765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.61
                 TS--SSS-C...CHHHHCCSCCCEE.....EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  63 pepaapvse...vwavllelperlL.....lilDglDelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                  ++++pvs    +w ++l l++ lL     l+l   De  ++l+      +  +L+++++     ++ +l++
  EHT99479.1 141 EQLQRPVSDfsgGWRMRLNLAQALLcrsdlLLL---DEPTNHLDL----DAVIWLERWLKS--YEGTLILIS 203
                 4445555557779************99996555...566665555....557888888887..666666665 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0044
                 EEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaeg 27 
                  l G++G GK+tL++ la ++a++
  EHT99479.1 342 GLLGRNGAGKSTLIKLLAGELAAK 365
                 589***************999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.036        16       3      23 ..      32      52 ..      30      97 .. 0.83
   2 !    9.8   0.0    0.0023         1       3      33 ..     343     373 ..     341     459 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.036
                EESSTTSSHHHHHHHHHHHHT CS
         AAA  3 lyGppGtGKTllakavakelg 23
                l+G  G+GK++l + +  e+ 
  EHT99479.1 32 LVGKNGCGKSTLLSLLKGEIT 52
                89**********999887764 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0023
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTT CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgse 33 
                 l G  G GK++l+k +a el ++  ei +++
  EHT99479.1 343 LLGRNGAGKSTLIKLLAGELAAKAGEIGLAK 373
                 789****************977755554443 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00071      0.32       6      37 ..      19      50 ..      12      80 .. 0.84
   2 ?    4.1   0.0     0.069        31      11      41 ..     335     365 ..     327     448 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00071
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslskq 37
                 +a  +i  Gq+++++g++g+Gk+++++ l  +
   EHT99479.1 19 NATATINPGQKVGLVGKNGCGKSTLLSLLKGE 50
                 57789999****************99776655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.069
                  EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  11 ivqGqrtlipgafgvGktvisqslskqsnsd 41 
                  +v G r++++g +g Gk+++++ l+ +  ++
   EHT99479.1 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAAK 365
                  688*****************99888775544 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00071      0.32      17      53 ..      15      51 ..       8      57 .. 0.85
   2 !   11.6   0.2   0.00022     0.097      20      57 ..     329     366 ..     320     372 .. 0.80
   3 ?   -2.4   0.8       4.3   1.9e+03     184     208 ..     556     580 ..     534     627 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00071
                HHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 17 ellerllakaGraqvvGltGvPGaGkstlvealglel 53
                 ll++++a+    q+vGl G  G Gkstl++ l  e+
  EHT99479.1 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLSLLKGEI 51
                6788888888899*****************9987665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00022
                 HHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT CS
        MeaB  20 erllakaGraqvvGltGvPGaGkstlvealglelrrrG 57 
                 +++  +     ++Gl G  GaGkstl++ l+ el+++ 
  EHT99479.1 329 NAIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAAKA 366
                 555555556789******************99998765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHCSTTBTTB--EEE CS
        MeaB 184 kaarelraaleleeekekeWrpkvl 208
                   ++ lr+ +e++e++ ++W++++ 
  EHT99479.1 556 TQTQPLRKEIEKLEKQMAKWQAQLA 580
                 3334455555555555566655544 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.015       6.6      51      76 ..      25      50 ..       8      56 .. 0.78
   2 !    7.4   0.5    0.0047       2.1      54      80 ..     339     365 ..     332     400 .. 0.84
   3 ?   -1.2   0.0       2.1   9.4e+02      28      57 ..     412     441 ..     388     443 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.015
      DUF815 51 lpannvLLwGarGtGKSslvkallne 76
                +p ++v L+G+ G+GKS+l+  l  e
  EHT99479.1 25 NPGQKVGLVGKNGCGKSTLLSLLKGE 50
                6788999***********98776665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0047
      DUF815  54 nnvLLwGarGtGKSslvkallneyaee 80 
                 + + L G  G+GKS+l+k l  e+a++
  EHT99479.1 339 SRIGLLGRNGAGKSTLIKLLAGELAAK 365
                 556699*************99998776 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.1
      DUF815  28 ddLvgidkqkealventeqfleglpannvL 57 
                 d L g+  q ++++e te+f  g++a+ vL
  EHT99479.1 412 DYLGGFGFQGDKVTEVTERFSGGEKARLVL 441
                 55788889999**************99887 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0022         1      22      44 ..      29      51 ..      17     188 .. 0.75
   2 ?    4.2   0.1     0.047        21      23      38 ..     341     356 ..     327     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0022
                EEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnks 44
                 v+lvG+ G+GK+tl++    + 
  EHT99479.1 29 KVGLVGKNGCGKSTLLSLLKGEI 51
                589************98655554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.047
                 EEEEESTTSSHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlak 38 
                 ++l G+ G GK+tl+k
  EHT99479.1 341 IGLLGRNGAGKSTLIK 356
                 899***********87 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.025        11       2      20 ..      30      48 ..      29     112 .. 0.79
   2 ?    7.3   0.0     0.011       5.1       2      64 ..     341     410 ..     340     415 .. 0.58
   3 ?   -1.4   1.1       5.5   2.5e+03      46      80 ..     554     589 ..     519     617 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.025
      AAA_28  2 ivitGgestGKTtlleaLa 20
                + ++G  ++GK+tll+ L+
  EHT99479.1 30 VGLVGKNGCGKSTLLSLLK 48
                668999**********998 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.011
      AAA_28   2 ivitGgestGKTtlleaLa....ar..gypvvpEaareileekl..akgedalpwvedllafaervleeql 64 
                 i ++G  ++GK+tl++ La    a+  ++   + +   ++ +++    + d++p  + l ++a +vle+ql
  EHT99479.1 341 IGLLGRNGAGKSTLIKLLAgelaAKagEIGLAKGIKLGYFAQHQleYLRADESPL-QHLSRLAPKVLEQQL 410
                 6789999***********9555322434445555555555555533223333333.455566666666655 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 5.5
      AAA_28  46 lpwvedllafaervleeqleeeaaa.aankvlfcDr 80 
                 l+ + ++l+ +++ le+q+++ +a+ a+ + l+ D 
  EHT99479.1 554 LRTQTQPLRKEIEKLEKQMAKWQAQlADAEHLLADS 589
                 333334444444445555555444444445444443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00071      0.32      32      83 ..      26      75 ..      14     129 .. 0.75
   2 ?   -1.3   0.0         3   1.3e+03     168     188 ..     184     204 ..     157     206 .. 0.68
   3 ?    5.4   0.5     0.026        12      31      59 ..     336     364 ..     329     484 .. 0.87
   4 ?   -0.5   0.4       1.8   7.9e+02      85     149 ..     567     623 ..     543     628 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00071
      AAA_25 32 agelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdse 83
                 g  + l+G  g+GK+tl++ l  +++++   +  + p ++   +v+ E ++
  EHT99479.1 26 PGQKVGLVGKNGCGKSTLLSLLKGEITSDAGSFT-F-PGNWSLAWVNQETPA 75
                5777789********************6554444.3.589999999999887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3
      AAA_25 168 lvealeriarrtgaavllvhH 188
                 +v +ler+ + +  +++l+ H
  EHT99479.1 184 AVIWLERWLKSYEGTLILISH 204
                 344566666677777777766 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.026
      AAA_25  31 pagelallaGapgtGKttlaldlalavat 59 
                 + g+ + l G+ g+GK+tl   la ++a 
  EHT99479.1 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAA 364
                 458899999**********9999988884 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.8
      AAA_25  85 elrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviD 149
                  l++ ++++ ++l+d ++ll+ ++          + ++ + lta++++ ++   + e+v++  +D
  EHT99479.1 567 KLEKQMAKWQAQLADAEHLLADSALY--------EHSRKADLTAALQKQAESKSALEEVEMAWLD 623
                 57888999999998888888887533........3344444666666555555555666665555 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.061        27       2      23 ..      30      51 ..      29      56 .. 0.84
   2 ?    8.4   0.1    0.0043       1.9       2      34 ..     341     373 ..     340     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.061
        MobB  2 lgivgksgsGKTtLleklipel 23
                +g+vgk+g+GK tLl+ l  e+
  EHT99479.1 30 VGLVGKNGCGKSTLLSLLKGEI 51
                689************9876655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0043
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgtiK 34 
                 +g+ g++g+GK tL++ l  el+a+  ++g+ K
  EHT99479.1 341 IGLLGRNGAGKSTLIKLLAGELAAKAGEIGLAK 373
                 7899*********************99999877 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0039       1.8      21      42 ..      32      53 ..      17      59 .. 0.86
   2 ?   -2.3   0.0         5   2.2e+03      45      73 ..     215     243 ..     212     274 .. 0.70
   3 ?    6.4   0.3     0.011       4.7      23      42 ..     345     364 ..     340     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
  Zeta_toxin 21 lgGqpGAGKselaellkdeler 42
                l+G  G+GKs+l++llk e+++
  EHT99479.1 32 LVGKNGCGKSTLLSLLKGEITS 53
                89***************99964 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
  Zeta_toxin  45 nvvrldpDdlRelhPeyeeilkadpkkas 73 
                 +++++++ ++ e+  +y++ ++++ +k +
  EHT99479.1 215 KIIHIEQQTMTEYTGNYSSFERQRGAKLA 243
                 56777777777777777777776555444 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.011
  Zeta_toxin  23 GqpGAGKselaellkdeler 42 
                 G  GAGKs+l++ll+ el++
  EHT99479.1 345 GRNGAGKSTLIKLLAGELAA 364
                 899************99973 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.9   8.7e+02      65      77 ..     169     181 ..     137     185 .. 0.63
   2 ?    8.7   0.1    0.0044         2      26      88 ..     424     473 ..     409     475 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.9
     SbcCD_C  65 rlvfLDEAFsklD 77 
                 +l++LDE  + lD
  EHT99479.1 169 DLLLLDEPTNHLD 181
                 5778888877777 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0044
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 + + +++ SGGek+ l+   la      +++      ++ l++LDE  + lD +++++l e+l
  EHT99479.1 424 VTEVTERFSGGEKARLV---LA----LIVWQ------RPNLLLLDEPTNHLDLDMRQALTEAL 473
                 67788899999993333...22....23455......588**************999998876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.029        13       1      20 [.      29      48 ..      29      67 .. 0.83
   2 ?    4.9   0.1     0.066        30       2      20 ..     341     359 ..     340     371 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.029
                EEEEESSTTSSHHHHHHCHC CS
         Roc  1 KvvlvGdsgvGKtsllkrfv 20
                Kv lvG++g GK++ll+ + 
  EHT99479.1 29 KVGLVGKNGCGKSTLLSLLK 48
                899************98665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.066
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 + l+G +g+GK++l+k + 
  EHT99479.1 341 IGLLGRNGAGKSTLIKLLA 359
                 779***********98765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.055        25      50      69 ..      32      51 ..      12      75 .. 0.82
   2 ?    5.4   0.0     0.034        15      50      73 ..     343     366 ..     327     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.055
       Rad17 50 isGPsGCgkstvvkvLskel 69
                + G  GCgkst +  L  e 
  EHT99479.1 32 LVGKNGCGKSTLLSLLKGEI 51
                7899********99997665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.034
       Rad17  50 isGPsGCgkstvvkvLskelgikl 73 
                 + G  G gkst +k L+ el+ k 
  EHT99479.1 343 LLGRNGAGKSTLIKLLAGELAAKA 366
                 45999*************999876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.088        40       2      24 ..      30      52 ..      29      58 .. 0.83
   2 ?    6.8   0.1     0.013       5.9       2      26 ..     341     365 ..     340     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.088
                EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellk 24
                v + G+ G GK+Tl++ +  ++ 
  EHT99479.1 30 VGLVGKNGCGKSTLLSLLKGEIT 52
                7789**********998877765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
                 EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkss 26 
                 + + G+ G GK+Tl+k ++ +l+ +
  EHT99479.1 341 IGLLGRNGAGKSTLIKLLAGELAAK 365
                 6788*************99998765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   0.00017     0.074      27      44 ..      31      48 ..      16      54 .. 0.84
   2 ?   -0.0   0.3       1.2   5.5e+02     197     260 ..     199     274 ..     188     335 .. 0.61
   3 ?    4.9   0.2     0.041        18      28      43 ..     343     358 ..     339     360 .. 0.91
   4 ?   -1.0   0.0       2.4   1.1e+03     323     350 ..     448     475 ..     445     478 .. 0.88
   5 ?   -0.7   1.4       2.1   9.3e+02     150     184 ..     542     576 ..     510     631 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00017
      AAA_15 27 vliGkNnsGKSsileald 44
                 l+GkN++GKS++l +l+
  EHT99479.1 31 GLVGKNGCGKSTLLSLLK 48
                59************9985 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.2
      AAA_15 197 lllisakRnvsdedsekkssllgklkekileealqekl............eeelteklkeiqeklkeidkklaeel 260
                 l lis +R++ d   +k+  +  +++ ++  ++++ +              ++++ek  ++q+ ++ +  + ++ +
  EHT99479.1 199 LILISHDRDFLDPVVDKIIHIEQQTMTEYTGNYSSFERqrgaklaqqqalYQSQQEKVAHLQKYIDRFRAQATKAK 274
                 5678888888887777777777777777777654433366676444444444455555555555555544443222 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.041
      AAA_15  28 liGkNnsGKSsileal 43 
                 l G+N++GKS+++++l
  EHT99479.1 343 LLGRNGAGKSTLIKLL 358
                 67***********998 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.4
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllke 350
                 ++++ll++EP +hL  ++ + l ++l++
  EHT99479.1 448 RPNLLLLDEPTNHLDLDMRQALTEALID 475
                 689***********99999999998875 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.1
      AAA_15 150 ekeeklekekeelkidkedlkklikkleeslkkee 184
                   +++++ +++el ++ + l+k i+kle+++ k +
  EHT99479.1 542 QARKDQKRREAELRTQTQPLRKEIEKLEKQMAKWQ 576
                 22233344444444444444444444444444433 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0      0.01       4.7       2      23 ..      29      50 ..      28      85 .. 0.81
   2 ?    2.7   0.1      0.18        80       2      23 ..     340     361 ..     339     378 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.01
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                +v lvG+  +Gk+tl+  l g 
  EHT99479.1 29 KVGLVGKNGCGKSTLLSLLKGE 50
                689*************999875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.18
                 EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltga 23 
                 ++ l+G   +Gk+tl+  l+g 
  EHT99479.1 340 RIGLLGRNGAGKSTLIKLLAGE 361
                 57899************99985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0097       4.4       3      22 ..      28      47 ..      26      55 .. 0.87
   2 ?   -0.1   0.1       1.4   6.5e+02      70     121 ..     212     266 ..     172     275 .. 0.76
   3 ?    5.7   0.3     0.024        11       4      22 ..     340     358 ..     338     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0097
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                +k+ ++G++g GK+tl++ l
  EHT99479.1 28 QKVGLVGKNGCGKSTLLSLL 47
                7999************9987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.4
      AAA_24  70 viDtideleelclaevirqnekaesked..kgdgkG.ygelaeefrrllkklqel 121
                 v+D i ++e++++ e   + + +e + +    ++++ y+  +e++  l k+++ +
  EHT99479.1 212 VVDKIIHIEQQTMTEYTGNYSSFERQRGakLAQQQAlYQSQQEKVAHLQKYIDRF 266
                 8999999999999999999999888855224456778888888877777766665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.024
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +i + G +g+GK+tl+k l
  EHT99479.1 340 RIGLLGRNGAGKSTLIKLL 358
                 799*************987 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0091       4.1       2      24 ..      28      50 ..      27      54 .. 0.89
   2 ?    5.2   0.1     0.036        16       3      24 ..     340     361 ..     338     366 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0091
   PduV-EutP  2 kkilliGkvgsGKttLtqalkge 24
                +k+ l+Gk g+GK tL   lkge
  EHT99479.1 28 QKVGLVGKNGCGKSTLLSLLKGE 50
                5888*************999986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.036
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 +i l+G+ g+GK tL + l ge
  EHT99479.1 340 RIGLLGRNGAGKSTLIKLLAGE 361
                 7889*************99886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.065        29      10      26 ..      32      48 ..      28      58 .. 0.86
   2 ?   -0.6   0.0       3.2   1.4e+03      82     128 ..     160     202 ..     142     208 .. 0.82
   3 ?    9.1   0.0    0.0033       1.5      10      63 ..     343     408 ..     339     484 .. 0.67
   4 ?   -1.7   0.3       7.1   3.2e+03      53      90 ..     575     612 ..     527     628 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.065
      AAA_22 10 vtGesGtGKTtllrrll 26
                ++G  G+GK+tll  l+
  EHT99479.1 32 LVGKNGCGKSTLLSLLK 48
                79**********99887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.2
      AAA_22  82 leqalraravielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                 l+qal  r++  ll++DE  + l   +a+ +L ++l+  ++  +liL+
  EHT99479.1 160 LAQALLCRSD--LLLLDEPTNhL-DLDAVIWLERWLK--SYEGTLILI 202
                 5556665655..9*****88889.8999999999999..999999987 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0033
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsstsskdllrellra 63 
                 + G  G+GK+tl++ l+ +l +  ka e              ++ e+++ + + +  ++ l+ ++l++
  EHT99479.1 343 LLGRNGAGKSTLIKLLAGELAA--KAGEiglakgiklgyfaqHQLEYLRADESPLQHLSRLAPKVLEQ 408
                 5699*************99943..33335577777777776666666666666666666666666655 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 7.1
      AAA_22  53 skdllrellralglelkaerlsseellealeqalrara 90 
                 ++  l +  + l +++ +e  ++ +l +al++++++++
  EHT99479.1 575 WQAQLADAEHLLADSALYEHSRKADLTAALQKQAESKS 612
                 44444444444444444455666666677777777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00039      0.17      21      40 ..      30      48 ..      11      63 .. 0.80
   2 ?    1.8   0.9      0.66   2.9e+02     133     173 ..     244     284 ..     204     293 .. 0.54
   3 ?    3.6  20.9      0.18        81      24     200 .]     343     629 ..     341     629 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00039
      AAA_23 21 ltlItGpNGaGKTTildAik 40
                +  ++G+NG+GK+T+l  +k
  EHT99479.1 30 V-GLVGKNGCGKSTLLSLLK 48
                4.789**********98776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.66
      AAA_23 133 nlilflgqerfeefelkdkkerleelekeleeledekklle 173
                 ++ +++++++++   l++  +r ++  ++ ++++ ++k le
  EHT99479.1 244 QQQALYQSQQEKVAHLQKYIDRFRAQATKAKQAQSRIKMLE 284
                 33344444444444445555555555555555555555444 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.18
      AAA_23  24 ItGpNGaGKTTildAiklaLygetprlsrks.................grgfeksdveiese..........................gkvkayveltf 79 
                 + G NGaGK+T++  +   L  ++++ +  +                 +            e                           +++++ e+t 
  EHT99479.1 343 LLGRNGAGKSTLIKLLAGELAAKAGEIGLAKgiklgyfaqhqleylraD------------EsplqhlsrlapkvleqqlrdylggfgFQGDKVTEVTE 429
                 57***************88877777666655444544444444444331............25555555666667777777777777756666666665 PP

      AAA_23  80 enkdgry...........................................trsiererelskkkgkttkkaklellei.....deleqfisellgskki 130
                 +  +g++                                            + ++ +r+l +  ++  +     ++++     ++ +q +s+    +k+
  EHT99479.1 430 RFSGGEKarlvlalivwqrpnlllldeptnhldldmrqaltealidfegaLVVVSHDRHLLRATTDDLYLVHDGSVDVfpgdlEDYQQWLSD---LQKQ 525
                 555665577***************************************999999999**999999999999999999998665555555554...3445 PP

      AAA_23 131 ilnlilflgqer.feefelkdkkerleelekeleeledekkllekl.................................eqekekekeleeleeeleei 195
                 + ++ +  +q++ +  +++kd+k r +el+++++ l +e+++lek+                                 +++ e + +lee+e ++ ++
  EHT99479.1 526 QTQNEAAPKQDNgNSAQARKDQKRREAELRTQTQPLRKEIEKLEKQmakwqaqladaehlladsalyehsrkadltaalQKQAESKSALEEVEMAWLDA 624
                 55555555555577788999*********************************************9999999999999777778888999999999999 PP

      AAA_23 196 lkele 200
                 +++le
  EHT99479.1 625 QEKLE 629
                 88886 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5      0.11        51      27      49 ..     254     276 ..     253     279 .. 0.83
   2 ?    9.6   2.6     0.002      0.91      23      55 ..     552     584 ..     547     585 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.11
     DUF1192  27 erIalLeaEIaRleaaiakkkas 49 
                 e +a+L++ I+R +a+ +k+k+ 
  EHT99479.1 254 EKVAHLQKYIDRFRAQATKAKQA 276
                 789***********998887665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.002
     DUF1192  23 eELeerIalLeaEIaRleaaiakkkasraAAea 55 
                 +EL++  + L++EI++le+++ak +a+ a Ae 
  EHT99479.1 552 AELRTQTQPLRKEIEKLEKQMAKWQAQLADAEH 584
                 69999999*********************9996 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3       2.7   1.2e+03      54     119 ..     219     282 ..     214     290 .. 0.65
   2 ?   13.1   1.2   0.00016     0.072      56     148 ..     502     589 ..     483     591 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.7
  NAD_binding_9  54 vpasemslftddpptfaeWlrergaleeaeeldpddfvpRalyGrYlrdlfeellarlpegvtvev 119
                    +  ++m+ +t +  +f++   ++ a  + ++l +++  + a++++Y++ + ++++++ +++ ++++
     EHT99479.1 219 IEQQTMTEYTGNYSSFERQRGAKLA--QQQALYQSQQEKVAHLQKYIDRFRAQATKAKQAQSRIKM 282
                    5555566665544444444444332..246777777777788889999999888888888777776 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00016
  NAD_binding_9  56 asemslftddpptfaeWlrergaleeaeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaada 148
                     + + +f+ d +++++Wl++ +     ++ ++++ +p++  G   +++ ++  ++++ +++ + +r+e+++le++ ++++  lad ++l ad+
     EHT99479.1 502 DGSVDVFPGDLEDYQQWLSDLQ-----KQQTQNEAAPKQDNGNSAQARKDQKRREAELRTQTQPLRKEIEKLEKQMAKWQAQLADAEHLLADS 589
                    45677788888*********99.....36799********************************************************99997 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.42   1.9e+02      19      40 ..      27      48 ..      11      61 .. 0.72
   2 ?    7.0   0.2     0.013       5.7      19      45 ..     338     364 ..     316     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.42
                TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgla 40
                g+ + L G+ G+GK+tl   l 
  EHT99479.1 27 GQKVGLVGKNGCGKSTLLSLLK 48
                66799***********987654 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.013
                 TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgv 45 
                 g+ i L G  GaGK+tl++ la +l  
  EHT99479.1 338 GSRIGLLGRNGAGKSTLIKLLAGELAA 364
                 5669999*************9988865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.017       7.7       4      22 ..      32      50 ..      29      65 .. 0.82
   2 ?    4.1   0.5     0.093        42       4      25 ..     343     364 ..     341     376 .. 0.83
   3 ?   -2.2   0.0       8.5   3.8e+03      69      85 ..     612     628 ..     564     632 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.017
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                LvG+ G+gKs+l   l+  
  EHT99479.1 32 LVGKNGCGKSTLLSLLKGE 50
                9***********9998765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.093
                 EE--SSSSHHHHHHHGGGGBS- CS
       AAA_5   4 LvGppGtgKselaerlaaalnr 25 
                 L+G  G gKs+l++ la  l +
  EHT99479.1 343 LLGRNGAGKSTLIKLLAGELAA 364
                 89*************9977654 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 8.5
                 EEEESGGG--HHHHHHH CS
       AAA_5  69 lvlDEveraesevlnsL 85 
                   l+Eve+a  +++++L
  EHT99479.1 612 SALEEVEMAWLDAQEKL 628
                 34677777777766666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.054        24       4      17 ..      32      45 ..      30      59 .. 0.88
   2 ?   -1.6   0.1       5.9   2.7e+03      83      96 ..     234     247 ..     186     289 .. 0.50
   3 ?    6.8   0.0     0.016         7       5      24 ..     344     363 ..     341     413 .. 0.76
   4 ?    0.3   0.6       1.6   7.1e+02      54     134 ..     534     623 ..     478     629 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.054
      AAA_33  4 lvGlpGsGKstlae 17
                lvG +G+GKstl+ 
  EHT99479.1 32 LVGKNGCGKSTLLS 45
                79*********986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.9
      AAA_33  83 rerarflklarrlg 96 
                  er+r  kla+++ 
  EHT99479.1 234 FERQRGAKLAQQQA 247
                 33333333333332 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.016
      AAA_33   5 vGlpGsGKstlaerllkklg 24 
                  G +G+GKstl++ l+ +l+
  EHT99479.1 344 LGRNGAGKSTLIKLLAGELA 363
                 6899**********998887 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.6
      AAA_33  54 rlyqilnelarkalsagrnvildat..nls.....rrerarflklar..rlgvpvrivvvetdeetlkeRlakRaangddrsevpeeald 134
                 +  +  ++ ark ++++ + +  +t  +++     ++++a++ + +   ++  ++++++ ++  + l + l+k+a+++ +  ev+++ ld
  EHT99479.1 534 KQDNGNSAQARKDQKRREAELRTQTqpLRKeieklEKQMAKWQAQLAdaEHLLADSALYEHSRKADLTAALQKQAESKSALEEVEMAWLD 623
                 444444555555554444444433322333222222222222222221122223555555666666666666666555555555555555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.084        38      25      48 ..      29      52 ..       7      60 .. 0.85
   2 ?    0.0   0.1       1.7   7.6e+02      75     131 ..     215     274 ..     188     300 .. 0.59
   3 ?   11.7   0.4   0.00047      0.21      24      52 ..     339     366 ..     327     371 .. 0.83
   4 ?   -1.5   1.7       5.1   2.3e+03     132     203 ..     547     614 ..     506     629 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.084
       DUF87 25 HlAilgsTGsGKSntvavLleell 48
                 ++ +g+ G GKS++ ++L  e+ 
  EHT99479.1 29 KVGLVGKNGCGKSTLLSLLKGEIT 52
                68999*************988876 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.7
       DUF87  75 kvkvitpspsakdkelkinpwsldpeelldllee.....ddkpaaavqrsvleealdqaka.k 131
                 k+ +i+++    ++e++ n++s++ +  ++l+       +++++ a ++++++++ +qa++ k
  EHT99479.1 215 KIIHIEQQ---TMTEYTGNYSSFERQRGAKLAQQqalyqSQQEKVAHLQKYIDRFRAQATKaK 274
                 44444443...5777777788888888888887754433333333444444444444444332 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00047
       DUF87  24 rHlAilgsTGsGKSntvavLleellekkg 52 
                  +++ lg+ G+GKS+++++L  el+  k 
  EHT99479.1 339 SRIGLLGRNGAGKSTLIKLLAGELA-AKA 366
                 6899*******************99.444 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 5.1
       DUF87 132 eekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsf.snsstdliallleklekegki 203
                 +++ ++  ++  + l++e++    +l+k+  + +a+l d+ e+ll + ++  ++ ++dl+a l +++e+++++
  EHT99479.1 547 QKRREAELRTQTQPLRKEIE----KLEKQMAKWQAQLADA-EHLLADSALYeHSRKADLTAALQKQAESKSAL 614
                 22222222222222233333....3333333333333322.22332223323555555555555555555555 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3     0.014       6.1     173     218 ..     237     281 ..     178     307 .. 0.59
   2 ?    3.5   6.1     0.095        43     144     235 ..     517     607 ..     464     633 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.014
  Exonuc_VII_L 173 klasrlkspeellerkrqrldeleerleralkkqlkkkrerleelk 218
                   +   +l+++++l++++++++ +l++ ++r  + q++k++++ +++k
    EHT99479.1 237 QRGAKLAQQQALYQSQQEKVAHLQKYIDR-FRAQATKAKQAQSRIK 281
                   11233445556666666666666666665.3333333333333333 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.095
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k.ekleekkerlkkl 235
                   +++++l++++ + e a k+   +++q  +  ++r ++ +++++  r+++++le+++ +  + ql+ +++ l   +  l + ++ ++ ++ l+k+
    EHT99479.1 517 QWLSDLQKQQTQNEAAPKQDNGNSAQARKDQKRREAELRTQTQPLRKEIEKLEKQMAK-WQAQLADAEHLLADSA--LyEhSRKADLTAALQKQ 607
                   2222233222222222222222222222222222222222222223333333333333.2222222222222222..11111111111111111 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   3.3       1.7   7.7e+02      27      68 ..     230     275 ..     218     288 .. 0.54
   2 ?   11.9  17.8   0.00056      0.25      25     132 ..     512     627 ..     505     628 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.7
      APG6_N  27 aYeeflkklkkekkeeek....qdeeleeleeeleklekeeeelle 68 
                 +Y++f+++  ++  ++++    q+e++++l++ +++ +++  ++ +
  EHT99479.1 230 NYSSFERQRGAKLAQQQAlyqsQQEKVAHLQKYIDRFRAQATKAKQ 275
                 5666666666554443335555555666666665554444433332 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00056
      APG6_N  25 rdaYeeflkklkkekkeeek........qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlellel 115
                  ++Y++ l+ l+k+++++e+        + + +++ +++ ++l+ + + l +e+++lek+ ++ +a+la++e  l++    e+    +  +   +++e 
  EHT99479.1 512 LEDYQQWLSDLQKQQTQNEAapkqdngnSAQARKDQKRREAELRTQTQPLRKEIEKLEKQMAKWQAQLADAEHLLADSALYEHSRKADLTAALQKQAES 610
                 579***********9998889988777766666666677788999999999999999999999999999999999999999999999999988889999 PP

      APG6_N 116 eeeldsleaqyehaqnq 132
                 +  l+ +e++  +aq++
  EHT99479.1 611 KSALEEVEMAWLDAQEK 627
                 99999998888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2246  (0.125272); expected 358.6 (0.02)
Passed bias filter:                      906  (0.0505327); expected 358.6 (0.02)
Passed Vit filter:                       162  (0.00903564); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              40  [number of targets reported over threshold]
# CPU time: 0.94u 0.25s 00:00:01.19 Elapsed: 00:00:00.42
# Mc/sec: 4584.04
//
Query:       EHT99480.1  [L=183]
Description: component of potassium effux complex with KefB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-41  140.6   0.0    5.8e-41  140.4   0.0    1.0  1  Flavodoxin_2    Flavodoxin-like fold
    4.6e-05   23.2   0.0    6.6e-05   22.7   0.0    1.4  1  FMN_red         NADPH-dependent FMN reductase
    0.00084   18.7   0.2     0.0012   18.3   0.2    1.2  1  Hepar_II_III_N  Heparinase II/III N-terminus


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.0   9.7e-45   5.8e-41       2     196 ..       6     172 ..       5     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 9.7e-45
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHH CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKg 98 
                   kiL+++ahp+    + s +++ +++a++  + h vtv+dLya               ay+++ +d+  eq + l+++d+i++q+Pl+ +++Pa+lK+
    EHT99480.1   6 KILLLFAHPEA---QDSIANRILLDAARPLE-H-VTVHDLYA---------------AYPDFFIDIHHEQ-QLLREHDVIIFQHPLYTYSCPALLKE 81 
                   9********98...45779***********9.8.********...............9***66*******.************************** PP

                   HHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCCCHHHHHHHHHHHHH CS
  Flavodoxin_2  99 wiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegvagaedeealaealerle 195
                   w+Drvl++gfa     g  ++g++L+gk ++ ivttG pe ++q++gl++++m+++l+p++ +++++ +++  p++++ +   ++ + l+++++++ 
    EHT99480.1  82 WLDRVLSRGFAN----G--IDGNALEGKYWRSIVTTGEPETAFQQHGLNRYSMNDILRPFELTAQMCRMHWMSPMIIYWA-RRQQPDLLKKYARAYS 171
                   **********88....5..778********************************************************95.4455888999999887 PP

                   H CS
  Flavodoxin_2 196 e 196
                   +
    EHT99480.1 172 D 172
                   6 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.1e-08   6.6e-05      67     119 ..      55     112 ..       5     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.1e-08
                 HHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-......SSCHCCTT-EEEEEEE-S CS
     FMN_red  67 lekiaaadaliivtPeYngsysgllKnalDrlsr.....trgkkelrgKpvalvavgg 119
                  + ++++d++i+  P Y +s ++llK  lDr+         ++++l+gK+   +++ g
  EHT99480.1  55 QQLLREHDVIIFQHPLYTYSCPALLKEWLDRVLSrgfanGIDGNALEGKYWRSIVTTG 112
                 577899*************************855788887778899999887776664 PP

>> Hepar_II_III_N  Heparinase II/III N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   1.9e-07    0.0012      97     136 ..     136     175 ..     105     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.9e-07
                     HHHHHHTTTTCHHHHHHHHHHH--CHHHHHHHHHHHHHHH CS
  Hepar_II_III_N  97 ElrwQlhRhkwweplakaYratgdekyakewveqykdwik 136
                     El+ Q++R++w++p+   +   ++ +  k+++  y+dw++
      EHT99480.1 136 ELTAQMCRMHWMSPMIIYWARRQQPDLLKKYARAYSDWLA 175
                     999***********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1327.03
//
Query:       EHT99481.1  [L=601]
Description: potassium:proton antiporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-68  230.5  45.4    3.9e-68  230.0  45.4    1.1  1  Na_H_Exchanger   Sodium/hydrogen exchanger family
    3.9e-26   91.6   0.1    6.7e-26   90.8   0.1    1.3  1  TrkA_N           TrkA-N domain
    0.00043   20.5   0.0    0.00076   19.7   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0071   16.4   0.1      0.036   14.1   0.1    2.1  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.074   12.3   0.2      0.099   11.9   0.2    1.2  1  FAD_binding_3    FAD binding domain
        4.4    6.0   5.5        1.8    7.3   0.1    2.2  2  DUF4781          Domain of unknown function (DUF4781)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0  45.4   1.3e-71   3.9e-68       2     380 ..      12     373 ..      10     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 230.0 bits;  conditional E-value: 1.3e-71
                     HHHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   2 vllillallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGl 96 
                     ++l++++l+v++ a rl+++ ++g+++aG+ +Gp+glg+i++  + + ++selg+++l+F +Glel++++l++ ++si+ ++ ++v+++++++G 
      EHT99481.1  12 IYLFAAVLIVPV-AARLGIGAVLGYLLAGIAIGPWGLGFISDV-DEILHFSELGVVFLMFIIGLELNPAKLWALRRSIFGIGAAQVIFSAAILGA 104
                     445555666666.******************************.*************************************************** PP

                     HHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger  97 llylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavggl 191
                     ll+l    ++++ +a++ g+ l++++++++l++++++g  +++ g+l +++++++D++++++la+++ la ++++g ++++++++ +l +a++++
      EHT99481.1 105 LLWL---TNFDWRAAVIGGIGLAMSSTAMALQLMRDKGMNRSEAGQLGFSVLLFQDLAVIPALALIPLLA-GNDSGSVDWMKVGMKVLAFAGMLV 195
                     ***7...588***********************************************************9.99********************** PP

                     HHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHSXHHHH CS
  Na_H_Exchanger 192 llglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvGlsldlkvl 286
                      ++ ++  ++r+i ++  + re++++++lll+l++al++++lg+s++lg f+aG++l+e+e++++l+  +e+f  gl+++lfF++vG+ l+l vl
      EHT99481.1 196 GGRYLLRPIFRYIAAS--GVREVFTAASLLLVLGSALFMDALGLSMALGTFIAGILLAESEYRHELEVAIEPFK-GLLLGLFFISVGMALNLGVL 287
                     ****************..********************************************************.******************** PP

                     HXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 287 nnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpllk 380
                          ++i++ll +++++ +++l+ ++l+r++gl ++e+  ++  ++q g++a++l++++ ++ l + + ++ll+v+v +++      ++pll+
      EHT99481.1 288 ---YTHIIAILLGVLTLVSVKLLVLYVLARIYGLRSSERQQFAGVLSQGGEFAFVLFSAASSARLFSGDQLPLLLVTVTLSMM-----TTPLLM 373
                     ...8999999999999999*************99998888888888889**********************************.....999886 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.1   2.2e-29   6.7e-26       1     112 [.     403     514 ..     403     517 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 2.2e-29
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSG CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdp 99 
                 +i++G+Gr+G+ + + L++++k+++v ++d ++v+ +r+ g++v++gdat+ e+L++ag+++a+++++++++ e+ + +v+l+++++p+++i+ara+ +
  EHT99481.1 403 VIVVGFGRFGQVVGRLLMANNKRITVLERDISAVNLMRKYGYKVYYGDATELELLRAAGAADAQSIVITCSNPEDAMTIVHLCQQHFPHLQIMARARGR 501
                 79*****************8889**************************************************************************** PP

                 GGHHHHHHHTTSE CS
      TrkA_N 100 ehaellkklgadv 112
                  +a+ l ++g+++
  EHT99481.1 502 VEAHELLQAGVTQ 514
                 **********976 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.5e-07   0.00076       1      92 [.     403     488 ..     403     492 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.5e-07
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHH.HTTS.SEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaal.lkeg.dlvvnlsppissldvlkaCiet 92 
                      v+++G+G+ Gq+v +ll ++++   +itv +r+ + ++ +    ++   + +  da + e  L a+  +++  +v+ +s p  +++++ +C ++
       EHT99481.1 403 VIVVGFGRFGQVVGRLLMANNK---RITVLERDISAVNLM----RKYGYKVYYGDATELEL-LRAAgAADAqSIVITCSNPEDAMTIVHLCQQH 488
                      79*****************986...8*********95444....78888999999999998.5555366667*******************986 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.2e-05     0.036      11      83 ..     399     473 ..     390     487 .. 0.66
   2 ?   -1.0   0.0      0.55   1.7e+03      27      50 ..     480     503 ..     476     513 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHH.....HHHHT-SEEEE-S CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelk.....ellaeadvvisat 83 
                   ++ +v+++G G+ ++ v + L+a++ + ++v+ R+++ ++ l +++ g+++ + + +el+      + ++  +vi++ 
    EHT99481.1 399 DQPQVIVVGFGRFGQVVGRLLMANNKR-ITVLERDISAVN-LMRKY-GYKVYYGDATELEllraaGAADAQSIVITCS 473
                   5679***********999999987766.********8665.55666.3334444444433100002344444666655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.55
                   HHHHHHCCT-CEEEEEESSHHHHH CS
  Shikimate_DH  27 vakhLlakgvkkvvvaNRtlerak 50 
                   ++ hL+++++ ++ ++ R + r++
    EHT99481.1 480 TIVHLCQQHFPHLQIMARARGRVE 503
                   678***************999987 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   3.3e-05     0.099       3      87 ..     402     499 ..     400     580 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.....S--EEEHHHHHHHHHTT-HHH...HHHHSEECCCCEEEEEEE........CCC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.....radglnqrtmellrqlGledr...ilaegapnelmgealyne........lsd 82 
                    +V++VG G  G + ++lL     r +++e+  ++v+l      +  + + + +ellr +G +d    ++   +p++ m++++ ++        +  
     EHT99481.1 402 QVIVVGFGRFGQVVGRLLMANNKRITVLERDISAVNLMrkygyKVYYGDATELELLRAAGAADAqsiVITCSNPEDAMTIVHLCQqhfphlqiM-- 495
                    8***********************************9933333444456789*********987444577889999999999999555553331.. PP

                    CCEEE CS
  FAD_binding_3  83 tpkar 87 
                      +ar
     EHT99481.1 496 -ARAR 499
                    .2222 PP

>> DUF4781  Domain of unknown function (DUF4781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.2      0.16   4.9e+02     100     133 ..       8      46 ..       2      48 .. 0.64
   2 ?    7.3   0.1   0.00062       1.8     202     252 ..     111     161 ..      95     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
     DUF4781 100 va.avpvgaaalatPvaapvllaa....lvvgvgsavYs 133
                 +a ++ ++aa l++Pvaa + ++a    l++g++ + ++
  EHT99481.1   8 TAgVIYLFAAVLIVPVAARLGIGAvlgyLLAGIAIGPWG 46 
                 44478899*********9875554111155666666665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00062
     DUF4781 202 invssivisgtgvansvydlvlkvaddeqlsaldvlqlsasllffthsvvn 252
                 + +   vi+g+g+a+s++ + l+ ++d+ ++  ++ ql  s+l+f   +v 
  EHT99481.1 111 FDWRAAVIGGIGLAMSSTAMALQLMRDKGMNRSEAGQLGFSVLLFQDLAVI 161
                 5677889****************9999******************876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4424.92
//
Query:       EHT99482.1  [L=64]
Description: putative metal-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-20   72.1   1.9    3.5e-20   71.9   1.9    1.1  1  DUF2387          Probable metal-binding protein (DUF2387)
      3e-05   23.9   0.7    4.5e-05   23.3   0.7    1.3  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
    0.00013   22.2   1.2    0.00017   21.9   1.2    1.1  1  Lar_restr_allev  Restriction alleviation protein Lar
    0.00047   19.7   0.5    0.00071   19.1   0.5    1.3  1  GATA             GATA zinc finger
      0.003   17.4   0.6     0.0039   17.0   0.6    1.2  1  eIF-5_eIF-2B     Domain found in IF2B/IF5
     0.0039   16.6   1.7        1.3    8.6   0.1    2.2  2  zf-ribbon_3      zinc-ribbon domain
     0.0098   15.9   0.5      0.011   15.8   0.5    1.2  1  Elf1             Transcription elongation factor Elf1 like
  ------ inclusion threshold ------
      0.031   14.2   0.9       0.04   13.8   0.9    1.3  1  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
      0.031   14.4   0.5      0.037   14.1   0.5    1.2  1  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
      0.059   13.5   2.9        6.3    7.0   0.1    2.2  2  UPF0547          Uncharacterised protein family UPF0547
      0.064   13.1   4.4        1.6    8.7   0.6    2.7  3  TFIIS_C          Transcription factor S-II (TFIIS)
      0.066   12.9   2.9          2    8.3   0.1    2.2  2  zinc_ribbon_2    zinc-ribbon domain
      0.067   13.2   2.8        0.2   11.7   2.7    1.7  1  DZR              Double zinc ribbon
       0.11   12.2   2.4        5.4    6.8   0.1    2.2  2  Rubredoxin_2     Rubredoxin metal binding domain
       0.12   12.3   4.5        0.5   10.3   4.5    1.9  1  zinc_ribbon_4    zinc-ribbon domain
       0.62   10.2   5.2        9.4    6.4   0.6    2.1  2  Zn-ribbon_8      Zinc ribbon domain


Domain annotation for each model (and alignments):
>> DUF2387  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   1.9   3.1e-23   3.5e-20       1      54 [.       1      54 [.       1      60 [. 0.86

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 3.1e-23
     DUF2387  1 tkkrFiAGavCPrCsemDkirmweedeveyrECvsCgftdelsekgqsvakelk 54
                ++krFiAGavCP+C+e+D++ mw+e++v+++ECv+Cg+  + ++k+   ++  +
  EHT99482.1  1 MRKRFIAGAVCPHCQEKDTLAMWRENNVDVVECVKCGHQMREADKQARDQVRSN 54
                58************************************9998888655555544 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.7     4e-08   4.5e-05      13      46 .]       3      39 ..       1      39 [. 0.86

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4e-08
  Zn_Tnp_IS1595 13 lrWpngfvCPhCgsrkayrikt...rglfqCkeCrkq 46
                    r+ +g vCPhC+ +    +++     + +C +C++q
     EHT99482.1  3 KRFIAGAVCPHCQEKDTLAMWRennVDVVECVKCGHQ 39
                   588899*********7777777777***********8 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   1.2   1.5e-07   0.00017       6      49 ..      11      48 ..       9      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
  Lar_restr_allev  6 CPfCggravlersqrvvaeigqcvyCadCgastpwfkiaedeae 49
                     CP+C ++++l     +  +   +v+C +Cg    ++++a+++a+
       EHT99482.1 11 CPHCQEKDTLAMWRENNVD---VVECVKCGH---QMREADKQAR 48
                     ***********98888888...********9...5555555554 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   6.3e-07   0.00071       1      31 [.      11      41 ..      11      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.3e-07
        GATA  1 CsnCgttkT.plWRrgpdgnksLCnaCGlyyk 31
                C +C++++T ++WR++       C  CG  ++
  EHT99482.1 11 CPHCQEKDTlAMWRENNVDVV-ECVKCGHQMR 41
                ****************77777.*****97666 PP

>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   3.5e-06    0.0039      89     117 .]      10      39 ..       3      39 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-06
                   STSSSTSTCEEECC.SSSCEEEEESSSTCE CS
  eIF-5_eIF-2B  89 lCkeCkspetelek.eerllvlkCkaCgak 117
                   +C++C++++t  +  e+++ v++C +Cg++
    EHT99482.1  10 VCPHCQEKDTLAMWrENNVDVVECVKCGHQ 39 
                   6********9644449************85 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.3    0.0028       3.1      18      24 ..      10      16 ..       9      17 .. 0.81
   2 !    8.6   0.1    0.0011       1.3       3      11 ..      31      39 ..      30      45 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
  zf-ribbon_3 18 vCpyCGt 24
                 vCp+C++
   EHT99482.1 10 VCPHCQE 16
                 7****86 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0011
  zf-ribbon_3  3 vrCPnCGap 11
                 v+C +CG++
   EHT99482.1 31 VECVKCGHQ 39
                 79*****96 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.5   9.5e-06     0.011      24      56 ..      11      41 ..       2      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.5e-06
        Elf1 24 CpfCnheksvevkldkkekiaevsCkvCgesfe 56
                Cp+C++++++   + +++++ +v+C +Cg +++
  EHT99482.1 11 CPHCQEKDTL--AMWRENNVDVVECVKCGHQMR 41
                *******887..5789999**********9765 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.9   3.6e-05      0.04      29      61 ..       9      46 ..       2      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
  OrfB_Zn_ribbon 29 ktCseCgsknke....alsgrtfkCpnCgfe.adrDvn 61
                      C++C +k++     +++ ++++C +Cg++   +D  
      EHT99482.1  9 AVCPHCQEKDTLamwrENNVDVVECVKCGHQmREADKQ 46
                    57********99999999************96677765 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   3.3e-05     0.037       2      36 ..      11      50 ..      10      61 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.3e-05
    zf-Mss51  2 CPvpkhkqt....apkhvd.feCpdCGiptycseehwedD 36
                CP++++k t     +++vd +eC +CG  +    ++ +d 
  EHT99482.1 11 CPHCQEKDTlamwRENNVDvVECVKCGHQMREADKQARDQ 50
                ****99999****666665379*****8776666655555 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4    0.0062         7      16      21 ..      10      15 ..       6      17 .. 0.63
   2 ?    7.0   0.1    0.0057       6.3      12      22 ..      28      38 ..      27      39 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0062
     UPF0547 16 fCphCG 21
                +CphC+
  EHT99482.1 10 VCPHCQ 15
                466664 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0057
     UPF0547 12 vaaqfCphCGy 22
                v++++C  CG+
  EHT99482.1 28 VDVVECVKCGH 38
                7899**99**9 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.014        16       2      12 ..      10      20 ..       9      24 .. 0.80
   2 ?    8.7   0.6    0.0014       1.6      28      38 ..      30      40 ..      25      41 .. 0.81
   3 ?    1.1   0.0      0.32   3.6e+02      17      22 ..      39      44 ..      38      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.014
     TFIIS_C  2 kCpkCgsreay 12
                 Cp C+++++ 
  EHT99482.1 10 VCPHCQEKDTL 20
                6*****99875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
     TFIIS_C 28 fykCtkCghrW 38
                 ++C+kCgh+ 
  EHT99482.1 30 VVECVKCGHQM 40
                579******86 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.32
     TFIIS_C 17 QtRsaD 22
                Q+R aD
  EHT99482.1 39 QMREAD 44
                9****9 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.7     0.016        18       2       7 ..      11      16 ..      10      17 .. 0.76
   2 ?    8.3   0.1    0.0018         2       2       8 ..      33      39 ..      24      46 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.016
  zinc_ribbon_2  2 CpnCGa 7 
                   Cp+C +
     EHT99482.1 11 CPHCQE 16
                   999976 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0018
  zinc_ribbon_2  2 CpnCGae 8 
                   C +CG++
     EHT99482.1 33 CVKCGHQ 39
                   5555555 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.7   0.00018       0.2      15      40 ..      11      42 ..       6      49 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
         DZR 15 CseCgtk..lkavaa.......edrCpsCgekvdp 40
                C++C++k  l               C++Cg+++ +
  EHT99482.1 11 CPHCQEKdtLA---MwrennvdVVECVKCGHQMRE 42
                66666664422...112344556666666666544 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0048       5.4      17      26 ..      11      20 ..      10      21 .. 0.84
   2 ?    5.3   0.3     0.014        16       2       9 ..      32      39 ..      32      42 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0048
  Rubredoxin_2 17 CpsCgsWntl 26
                  Cp+C++ +tl
    EHT99482.1 11 CPHCQEKDTL 20
                  *****98886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.014
  Rubredoxin_2  2 vCsqCGfe 9 
                  +C +CG++
    EHT99482.1 32 ECVKCGHQ 39
                  5*****98 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.5   0.00045       0.5       4      35 ..      10      40 ..       9      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
  zinc_ribbon_4  4 tCpsCkakyeiddeklpakgv.kvrCskCghvF 35
                   +Cp+C+ k +++ +  +++ v  v C kCgh  
     EHT99482.1 10 VCPHCQEKDTLAMW--RENNVdVVECVKCGHQM 40
                   7***********98..7777769********86 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6    0.0084       9.4      27      34 ..       9      16 ..       2      22 .. 0.78
   2 ?    5.9   0.4     0.013        14       7      17 ..      32      42 ..      30      52 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0084
  Zn-ribbon_8 27 taCPeCgs 34
                  +CP+C++
   EHT99482.1  9 AVCPHCQE 16
                 46****98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.013
  Zn-ribbon_8  7 rCeeCghefev 17
                 +C +Cgh+  +
   EHT99482.1 32 ECVKCGHQMRE 42
                 69999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 524.40
//
Query:       EHT99483.1  [L=182]
Description: FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-10   39.6   0.0    6.5e-10   39.2   0.0    1.2  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.071   13.6   9.9       0.15   12.6   9.9    1.5  1  UreE_C    UreE urease accessory protein, C-terminal domain


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   7.3e-14   6.5e-10       7      93 ..       5     136 ..       1     137 [. 0.85

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 7.3e-14
                 TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT................................ CS
      FKBP_C   7 egdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge................................ 73 
                 ++ +V++ y+ + edg ++d+s   + pl    G g +i G+e+ale+  +G+k  ++ip + aYg+                                
  EHT99483.1   5 KDLVVSLAYQVRTEDGVLVDES-PVSAPLDYLHGHGSLISGLENALENHVAGDKFDVHIPANDAYGQyddnlvqrvpkdvfmgvdelqvgmrflaetdq 102
                 55589*****************.8999****************************************99999999999999999999999999988888 PP

                 ................TTBCTTTB.TTSEEEEEEEE CS
      FKBP_C  74 ................kglaggvippnatLvFeveL 93 
                                  + ++  + ++++L F+ve+
  EHT99483.1 103 gpvpveiteveddhvvVDGNH--MLAGQNLNFNVEV 136
                 888888877666654422223..7888999999997 PP

>> UreE_C  UreE urease accessory protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   9.9   1.7e-05      0.15      29      87 .]     111     168 ..     105     169 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
      UreE_C  29 eikedelrieddhvledmlrtlgaeveevlapfepeggAyeaakghghhehehghehsH 87 
                 e+++d++ +  +h+l+    +  +ev ++ ++ +pe+ A ++ +g + h+h+h+h+h+H
  EHT99483.1 111 EVEDDHVVVDGNHMLAGQNLNFNVEVVAIREA-TPEELAHGHVHGADGHHHDHDHDHDH 168
                 56788888888888888777788888887754.45555553333322244566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1446.27
//
Query:       EHT99484.1  [L=72]
Description: SlyX family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-23   83.4   1.1    1.4e-23   83.2   1.1    1.0  1  SlyX       SlyX
     0.0065   16.4   1.3     0.0067   16.4   1.3    1.1  1  CEP63      Centrosomal protein of 63 kDa
  ------ inclusion threshold ------
       0.02   15.2   2.2      0.023   15.1   2.2    1.1  1  DUF641     Plant protein of unknown function (DUF641)
      0.061   13.8   0.8      0.071   13.6   0.8    1.1  1  DUF16      Protein of unknown function DUF16
      0.099   12.8   1.0       0.11   12.7   1.0    1.1  1  Fib_alpha  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   1.1     4e-27   1.4e-23       2      67 .]       7      72 .]       6      72 .] 0.99

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 4e-27
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXX CS
        SlyX  2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgaseaeeepPPHY 67
                e+r+e+LE+klafqe ti++Ln++v++++ +++++++++rll e++k+ ++s+ a+ +ee+pPPHY
  EHT99484.1  7 EQRIEALESKLAFQEITIDQLNNTVVQHELEMSKMREHMRLLLEKFKASAPSMIADASEETPPPHY 72
                89**************************************************************** PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.3   1.9e-06    0.0067      22      66 ..       2      46 ..       1      63 [. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-06
       CEP63 22 kkseWeaqtraletrlkireeeLasarnaldekhkEvgllrqqle 66
                ++seWe++++ale++l  +e  + ++ n++ + + E+ ++r+++ 
  EHT99484.1  2 QQSEWEQRIEALESKLAFQEITIDQLNNTVVQHELEMSKMREHMR 46
                789**********************************99998654 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.2   6.3e-06     0.023      72     118 ..       2      48 ..       1      56 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.3e-06
      DUF641  72 eeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeea 118
                 ++se e++i+ + s+l+ +eit+++l++ + + + e+++++e+++ +
  EHT99484.1   2 QQSEWEQRIEALESKLAFQEITIDQLNNTVVQHELEMSKMREHMRLL 48 
                 789999************************************99765 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8     2e-05     0.071      47      92 ..       7      52 ..       2      60 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                .HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHH CS
       DUF16 47 geqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletL 92
                +++i++le k   q+  i++l++++ + + e+ k+ e ++l+le  
  EHT99484.1  7 EQRIEALESKLAFQEITIDQLNNTVVQHELEMSKMREHMRLLLEKF 52
                5677888888888888888888888888888888888888887765 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   3.1e-05      0.11      83     130 ..       3      50 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                 HHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  83 skeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqker 130
                 ++e e++i+ l+ ++  qe +i +L n++ + e +++k+++++  + +
  EHT99484.1   3 QSEWEQRIEALESKLAFQEITIDQLNNTVVQHELEMSKMREHMRLLLE 50 
                 578899*********************************999877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 629.69
//
Query:       EHT99485.1  [L=278]
Description: FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-31  106.5   0.3    4.2e-28   97.5   0.0    2.5  2  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    1.1e-23   83.9   8.4    2.4e-23   82.9   8.4    1.5  1  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 
     0.0023   18.2   2.2     0.0023   18.2   2.2    1.9  2  YbgS      YbgS-like protein
  ------ inclusion threshold ------
      0.019   14.9   2.6      0.041   13.8   2.6    1.5  1  Stathmin  Stathmin family
      0.077   13.0   0.1       0.73    9.8   0.0    2.0  2  DUF4827   Domain of unknown function (DUF4827)


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2    0.0024       8.5      22      54 ..      66      98 ..      50     162 .. 0.86
   2 !   97.5   0.0   1.2e-31   4.2e-28       4      94 .]     169     255 ..     166     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0024
                SSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTT CS
      FKBP_C 22 gkvfdssrsrakplefkvGsgqvikGfeealeg 54
                g+ +d+s++++++l +k++++q+i G ++a  g
  EHT99485.1 66 GRYMDNSLKEQEKLGIKLDKQQLIAGVQDAFGG 98
                78899********************99887655 PP

  == domain 2  score: 97.5 bits;  conditional E-value: 1.2e-31
                 BB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   4 eakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                  +k++dtV v+ykg+l dg++fd+s++r++pl+f+++   vi+G+ e+l+++k+G+k +l ipp+laYg++g+ g  ip+n+tLvF+veLl
  EHT99485.1 169 APKDSDTVVVNYKGTLIDGTEFDNSYTRGEPLSFRLD--GVIPGWTEGLKHVKKGGKIKLVIPPNLAYGKNGVPG--IPANSTLVFDVELL 255
                 5999*********************************..7*********************************66..************97 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   8.4   6.6e-27   2.4e-23       2      97 .]      55     161 ..      54     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 6.6e-27
      FKBP_N   2 dkvsYalGlsigqq......lkaq...gkeldkdavlaGlkdalkgkskltdeeiqevlqalqekl....qekqeeeaeknkaegeaFlaenkkkeGVk 87 
                 ++ +YalG+s+g++         q   g +ldk++++aG++da+ gkskl+deei+++lqa+++++     +k+e++a++n+++gea+ a+++k++GVk
  EHT99485.1  55 QQSAYALGASLGRYmdnslkE--QeklGIKLDKQQLIAGVQDAFGGKSKLSDEEIEQTLQAFEARVkgaaSAKMEKDAKENAEKGEAYSAKFAKESGVK 151
                 789*********995666430..2555899********************************88652222566699*********************** PP

      FKBP_N  88 ttesGLqYkV 97 
                 +tesGL+YkV
  EHT99485.1 152 KTESGLLYKV 161
                 *********9 PP

>> YbgS  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.2   6.5e-07    0.0023       5      77 ..       6      78 ..       1      87 [. 0.80
   2 ?   -1.8   0.3         1   3.6e+03      30      30 ..     149     149 ..     111     195 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.5e-07
        YbgS  5 ailfltaaltlgsGaalaadsnnGqansaadaGavagdakqnvaPnkvdnskinngstntnstatksttdsdk 77
                 + +l+++++++  a la ++++  a +aada ++a++a +n a  + d ++  + ++     + +s ++++k
  EHT99485.1  6 KVTLLATTMAVALNAPLAMAAETAAAPAAADAPQSAPQAPKNAAFKNEDQQSAYALGASLGRYMDNSLKEQEK 78
                566788888888888888888899********************99999988877777777777777666665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
        YbgS  30 a 30 
                  
  EHT99485.1 149 G 149
                 0 PP

>> Stathmin  Stathmin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.6   1.2e-05     0.041      37     103 ..      98     163 ..      81     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
    Stathmin  37 kkkdlsleeiqkKLeaAEeRRksleaqklkqlaekrekeeevlqKaaeennnfskaaeeklkqkmea 103
                  k++ls eei++ L+a E R k   + k+++ a++++ + e+ + +  ++ + +k++e  l +k e+
  EHT99485.1  98 GKSKLSDEEIEQTLQAFEARVKGAASAKMEKDAKENAEKGEAYSAKFAKE-SGVKKTESGLLYKVEK 163
                 6899******************9999999998888888777775554444.3566677777777665 PP

>> DUF4827  Domain of unknown function (DUF4827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.077   2.8e+02      36      89 ..     135     186 ..     113     201 .. 0.73
   2 ?    9.8   0.0    0.0002      0.73     133     162 ..     202     231 ..     171     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.077
     DUF4827  36 feaqdstTdvekneyvlfesnGvYmqivdkGkgeklkkgetaevlvRfteinll 89 
                 ++ + +  +  k+  v+ +++G+  ++ ++G+ge  + +++ +v+v ++ + + 
  EHT99485.1 135 EKGEAYSAKFAKESGVKKTESGLLYKVEKEGTGE--APKDSDTVVVNYKGTLID 186
                 3334444567778888889999999999****99..566677788888777665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
     DUF4827 133 yestsvpsGwlvpLkyvkeiAkVrLiVpsk 162
                 ++   v  Gw   Lk+vk+  k++L++p +
  EHT99485.1 202 FRLDGVIPGWTEGLKHVKKGGKIKLVIPPN 231
                 34456889*******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2261.37
//
Query:       EHT99486.1  [L=240]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-37  125.5   0.1    1.6e-36  124.6   0.1    1.4  1  PAS_6     YheO-like PAS domain
    5.2e-19   68.1   0.5    8.8e-19   67.4   0.5    1.4  1  HTH_22    HTH domain
    1.8e-05   24.4   0.0    4.9e-05   23.0   0.0    1.8  2  HTH_23    Homeodomain-like domain
    0.00012   22.1   0.1    0.00053   20.0   0.1    2.2  2  HTH_7     Helix-turn-helix domain of resolvase
     0.0012   18.6   0.1     0.0021   17.8   0.1    1.3  1  DUF658    Protein of unknown function (DUF658)
     0.0018   18.4   0.0     0.0046   17.1   0.0    1.6  1  HTH_17    Helix-turn-helix domain
     0.0019   18.0   0.0     0.0043   16.9   0.0    1.4  1  dCache_1  Cache domain
  ------ inclusion threshold ------
      0.013   15.3   0.1      0.029   14.1   0.1    1.6  1  HTH_10    HTH DNA binding domain
      0.022   14.8   0.0      0.059   13.4   0.0    1.7  1  HTH_29    Winged helix-turn helix
      0.032   14.4   0.0      0.067   13.3   0.0    1.5  1  HTH_28    Helix-turn-helix domain
      0.064   13.0   0.0       0.14   12.0   0.0    1.6  1  MerR      MerR family regulatory protein
      0.094   12.3   0.0       0.21   11.2   0.0    1.6  1  GerE      Bacterial regulatory proteins, luxR family
       0.24   11.7   0.8        1.5    9.2   0.1    2.4  2  NUMOD1    NUMOD1 domain


Domain annotation for each model (and alignments):
>> PAS_6  YheO-like PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.1   1.2e-39   1.6e-36       1     109 [.      29     137 ..      29     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 1.2e-39
       PAS_6   1 LeslkqlveglaellgencEvvlhdledpehsivaiaNghvtgRkvGdpltdlvlellkeeeeeeedvlvnyktktkdgkilksstifirdekgkligl 99 
                 L+s++++v+gla l+g++cE+vlh+le ++ s v iaNg++tgRkvG+p+tdl+l++l++++  +++v   y+t++k+g  +ks+ti ir+ ++++igl
  EHT99486.1  29 LKSYEAVVDGLAMLIGSHCEIVLHSLEYLNCSAVRIANGEHTGRKVGSPITDLALRMLHDMQGADSNVSRAYFTRAKSGVLMKSVTIAIRNRQQRVIGL 127
                 799************************************************************************************************ PP

       PAS_6 100 LCiNldlskl 109
                 LCiN++l+ +
  EHT99486.1 128 LCINMNLDVP 137
                 ******9876 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.5   6.4e-22   8.8e-19       2      63 .]     171     228 ..     170     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 6.4e-22
      HTH_22   2 lesiieevladlgkpverltkeekieivraLdekGiFllkgavekvAekLgiSraTvYryLr 63 
                 le +ieev ad++++    +++++++iv +L+ekGiF++k+a+++vAe+L+iS++TvY y+r
  EHT99486.1 171 LEFTIEEVSADRKVS----NNAKNRQIVLNLYEKGIFDIKDAINQVAERLNISKHTVYLYIR 228
                 67789**********....*****************************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.8   1.1e+04      35      46 ..      26      39 ..      26      42 .. 0.58
   2 !   23.0   0.0   3.6e-08   4.9e-05       4      45 ..     188     233 ..     185     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.8
      HTH_23 35 yrwlkryr..eeGl 46
                y +lk y+   +Gl
  EHT99486.1 26 YDILKSYEavVDGL 39
                67888884323555 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 3.6e-08
      HTH_23   4 ereRlrillllae.....GlsvreIAreLgvsrrTvyrwlkryreeG 45 
                 +++R+ +l l+ +     ++ + ++A++L++s++Tvy +++ ++ +G
  EHT99486.1 188 AKNRQIVLNLYEKgifdiKDAINQVAERLNISKHTVYLYIRQFK-NG 233
                 67788888888877888999999********************5.44 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.7   7.9e+03      21      30 ..      75      84 ..      73      85 .. 0.82
   2 !   20.0   0.1   3.8e-07   0.00053      14      41 ..     194     226 ..     182     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.7
                T--STTTSSS CS
       HTH_7 21 GisiskIAke 30
                G++i+++A +
  EHT99486.1 75 GSPITDLALR 84
                8999999965 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3.8e-07
                 GGSSTTTT-.....-STTTSSSS---SSSS--S CS
       HTH_7  14 vvkLleeGi.....siskIAkevnisRsTvYRy 41 
                 v+ L+e+Gi     +i+++A+++nis+ TvY y
  EHT99486.1 194 VLNLYEKGIfdikdAINQVAERLNISKHTVYLY 226
                 778888887777778****************66 PP

>> DUF658  Protein of unknown function (DUF658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.5e-06    0.0021      64     113 ..     182     231 ..     168     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
      DUF658  64 qkkkeerklpasvydyydkgefiitgtareisqflkigkhnvysyiqvgk 113
                 +k  ++ k    v + y+kg f i  +  ++++ l+i kh vy yi+  k
  EHT99486.1 182 RKVSNNAKNRQIVLNLYEKGIFDIKDAINQVAERLNISKHTVYLYIRQFK 231
                 45566778888999********************************8655 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.3e-06    0.0046       4      24 ..     209     229 ..     209     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.3e-06
      HTH_17   4 veEaAelLgvsrstvyrlirr 24 
                 ++++Ae L++s++tvy +ir+
  EHT99486.1 209 INQVAERLNISKHTVYLYIRQ 229
                 689****************84 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.1e-06    0.0043     115     171 ..      90     146 ..      64     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.1e-06
    dCache_1 115 aggggkpvisdpyvdqt.ggkpvitiavpiyddsgkfiGvlaadldldn.lqdllsnik 171
                 +g  +++++s +y+  + +g+++ +++++i+++++++iG l+++++ld+ +++++s++ 
  EHT99486.1  90 QG--ADSNVSRAYFTRAkSGVLMKSVTIAIRNRQQRVIGLLCINMNLDVpFSQIMSTFL 146
                 33..5999*****7656679***************************987777777665 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.1e-05     0.029       4      46 ..     189     229 ..     188     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
      HTH_10   4 kqlevlklAyemGYFdyPRrvtlkeLAkelGIskstlsehLrk 46 
                 k+++++ + ye+G Fd      ++++A++l+Isk t++ ++r+
  EHT99486.1 189 KNRQIVLNLYEKGIFDIKDA--INQVAERLNISKHTVYLYIRQ 229
                 78889999999999999765..579*************99997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-05     0.059       3      40 ..     192     234 ..     190     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
      HTH_29   3 qallllaeGvs.....tvsqiAkllglsrrtvyrwlkrfeegG 40 
                 q++l+l+e +       + q+A++l++s+ tvy +++ f +g 
  EHT99486.1 192 QIVLNLYEKGIfdikdAINQVAERLNISKHTVYLYIRQFKNGD 234
                 778888887558888889*********************9886 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.8e-05     0.067      13      38 ..     207     232 ..     191     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
      HTH_28  13 hsvreaArelgisrrtvyrWikryee 38 
                 ++++++A++l+is  tvy  i+++  
  EHT99486.1 207 DAINQVAERLNISKHTVYLYIRQFKN 232
                 37899******************987 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.14       2      22 ..     209     229 ..     208     229 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
                 HHHHHHHHTTTHHHHHHHHHT CS
        MerR   2 IgevAeltGvsprtLRyYEre 22 
                 I++vAe++++s +t+  Y r+
  EHT99486.1 209 INQVAERLNISKHTVYLYIRQ 229
                 99**************99885 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.21      21      40 ..     210     229 ..     207     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 HHHHHHHTS-HHHHHHHHHH CS
        GerE  21 keIAeelniSekTVkvhksn 40 
                 +++Ae+lniS+ TV  ++++
  EHT99486.1 210 NQVAERLNISKHTVYLYIRQ 229
                 79************999875 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.93   1.3e+03      24      34 ..      55      65 ..      55      66 .. 0.84
   2 ?    9.2   0.1    0.0011       1.5      19      37 .]     209     227 ..     207     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.93
      NUMOD1 24 kyLgishntIn 34
                +yL++s   I 
  EHT99486.1 55 EYLNCSAVRIA 65
                59****99986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0011
      NUMOD1  19 ireAakyLgishntInkyl 37 
                 i++ a+ L+is++t++ y+
  EHT99486.1 209 INQVAERLNISKHTVYLYI 227
                 7788999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1793.38
//
Query:       EHT99487.1  [L=128]
Description: tRNA 2-thiouridine synthesizing protein, subunit of sulfur transfer complex, TusD [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-28   98.1   0.1    4.5e-28   98.0   0.1    1.0  1  DrsE      DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.1   2.5e-32   4.5e-28       1     117 []       1     128 []       1     128 [] 0.97

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 2.5e-32
                 -EEEEEE-S-TTTBSHHHHHHHHHHHHHTTT-EEE.EEE-GGGGGGGBS---TGGGTS---GGGGGGCGG.GT-EEEEEHHHHHHTT--GGG....... CS
        DrsE   1 kkvfilvtggpygseaarealelalaaaalghevs.vffygdGvllllkgqtanpadeknlaellkalke.ygvklyvCgqaakargldede....... 90 
                 +++++lvtg+ yg++ a++al +a+a++a+gh+++ vffy +Gvl++++   a+++de +l+ +++ l++ +gv l +C++aa +rg+++++       
  EHT99487.1   1 MRYALLVTGPAYGTQQATSALLFANALLAAGHQLEsVFFYREGVLNANQ-LSAPASDEFDLVRAWQSLHQaHGVALNICVAAALRRGVTDAQeasrlal 98 
                 789**********************************************.********************99*****************999***9998 PP

                 ...E-T--EEEE-HHHHHHHHHH-SEEEE- CS
        DrsE  91 ...dlgvgvevsglgelaelqnegdrvitf 117
                    +l+ g++++glg+lae+++ ++r ++f
  EHT99487.1  99 pgaNLQPGFTLAGLGALAEAALRCERMVQF 128
                 8877766*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1019.71
//
Query:       EHT99488.1  [L=119]
Description: subunit of the heterohexameric YheLMN (TusBCD) mediator of sulfur relay [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-25   88.5   0.0    4.4e-25   88.3   0.0    1.0  1  DrsE      DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   2.5e-29   4.4e-25       1     117 []       2     119 .]       2     119 .] 0.97

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 2.5e-29
                 -EEEEEE-S-TTTBSHHHHHHHHHHHHHTTT-EEEEEE-GGGGGGGBS---TGGGTS---GGGGGGCGGGT.-EEEEEHHHHHHTT--GGG.E-T--EE CS
        DrsE   1 kkvfilvtggpygseaarealelalaaaalghevsvffygdGvllllkgqtanpadeknlaellkalkeyg.vklyvCgqaakargldede.dlgvgve 97 
                 k+v++++t +p+gs+a+re+l++ l+  al+ ++ +ff+gdGvl+l+++q+++ + ++++a+++  l+ y+  + y+C+++++ rgl+e+   + ++ e
  EHT99488.1   2 KRVAFVFTRAPHGSSAGREGLDAVLSTGALSDDIGLFFIGDGVLQLNSEQQPENIHSRHYAATFGVLALYDiDQCYLCRASLQSRGLAENApRI-LDAE 99 
                 789*************************************************************************************887766.69** PP

                 EE-HHHHHHHHHH-SEEEE- CS
        DrsE  98 vsglgelaelqnegdrvitf 117
                 + ++++l ++++ +dr++tf
  EHT99488.1 100 ILDASALRKKLAGYDRILTF 119
                 *******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 977.17
//
Query:       EHT99489.1  [L=95]
Description: subunit of the heterohexameric YheLMN (TusBCD) mediator of sulfur relay [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-27   94.9   0.1    2.7e-27   94.7   0.1    1.0  1  DsrH      DsrH like protein


Domain annotation for each model (and alignments):
>> DsrH  DsrH like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.1   1.5e-31   2.7e-27       1      87 []       7      92 ..       7      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.5e-31
                S-GGGS.-HHHHHHT--TT-EEEE-GGGGGGGBTTBTTHHHHHTSSSEEEEEHHHHHHTT-TTSB-TTSEEE-HHHHHHHHHHSS-E CS
        DsrH  1 kSpfesnalksclrllqegDavlLieDgVyaalkgsrllkalkeasvklyaLkeDleARGlteqlsegvkvidydgfVeltvkhkkv 87
                +Sp  s +++s+ rll ++D++lL++DgV+aa++gs +l++l+++++kl+aL++Dl+ARGl+ q+s+ v+ +dy+ fV+ltvkh+++
  EHT99489.1  7 HSPTYS-DIESLTRLLMPEDDLLLLQDGVLAAIEGSMALEQLRASGAKLWALEDDLNARGLSTQISPVVQSVDYTFFVALTVKHQQQ 92
                799999.*****************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 873.98
//
Query:       EHT99490.1  [L=124]
Description: 30S ribosomal subunit protein S12 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-42  144.2   1.3    1.3e-42  144.0   1.3    1.0  1  Ribosom_S12_S23  Ribosomal protein S12/S23
  ------ inclusion threshold ------
        0.1   13.4   0.0       0.19   12.5   0.0    1.4  1  Ribosomal_S12    Ribosomal protein S12


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   1.3   1.4e-46   1.3e-42       3     114 .]      14     123 ..      12     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 1.4e-46
                      ------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEBET CS
  Ribosom_S12_S23   3 elrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykvvk 96 
                      ++++k++++ale++pqkrGv+++++t+++kkPnsAlRkv+rvrL+ ng+evt++i+geg  ++l+Eh+++l+rG+r     vkDlpGvry++v+
       EHT99490.1  14 RKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLT-NGFEVTSYIGGEG--HNLQEHSVILIRGGR-----VKDLPGVRYHTVR 99 
                      678999***************************************.*************..***************.....************* PP

                      ....S---T..SSSTTTTT----T CS
  Ribosom_S12_S23  97 ....vagvs..lkalskykkekpk 114
                          ++gv+  ++++sky+ +kpk
       EHT99490.1 100 galdCSGVKdrKQSRSKYGVKKPK 123
                      *********999**********97 PP

>> Ribosomal_S12  Ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05      0.19      21      84 ..      36      97 ..      27      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
  Ribosomal_S12 21 lvlyvsprlpssGnrrilvaifllfnivllllvffccvlfvvlsflfiveGGGfidlpglkyfs 84
                    v+  +p+ p s  r+++ +   l n + + +  +     +   ++ ++ GG   dlpg++y++
     EHT99490.1 36 RVYTTTPKKPNSALRKVCRV--RLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHT 97
                   35667899999999998864..3444444445455555788888999***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1020.51
//
Query:       EHT99491.1  [L=156]
Description: 30S ribosomal subunit protein S7 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-65  219.6   2.4    1.4e-65  219.5   2.4    1.0  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   2.4     8e-70   1.4e-65       1     149 []       1     149 [.       1     149 [. 0.99

  Alignments for each domain:
  == domain 1  score: 219.5 bits;  conditional E-value: 8e-70
                   ..XSSSSCT------SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHH CS
  Ribosomal_S7   1 msrrkkakkrevlpdpkynselveklinklmkdGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrq 97 
                   m+rr+ + +r++lpdpk++sel++k++n lm dGkks+Ae+ivy+al+ ++++ +kd+le +e Alenv+P vevksrrvGG+tyqvpvevrp Rr+
    EHT99491.1   1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYTALETLAQRAGKDGLEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRN 97 
                   89*********************************************************************************************** PP

                   HHHHHHHHHHHSTSSSS-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7  98 alAlrwiieaarkrkeksmaekLaeElidAaegegaavkkreethrmAeanr 149
                   alA+rwi+eaarkr +ksma +La+El dAae++g+avkkre++hrmAean+
    EHT99491.1  98 ALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANK 149
                   ***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1113.52
//
Query:       EHT99492.1  [L=704]
Description: GTP-binding protein chain elongation factor EF-G [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-66  223.4   0.1    2.7e-66  222.8   0.1    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.8e-45  153.0   0.0    6.2e-45  151.9   0.0    1.7  1  EFG_IV       Elongation factor G, domain IV
    4.2e-34  116.5   0.0    9.6e-34  115.3   0.0    1.7  1  EFG_II       Elongation Factor G, domain II
    3.2e-29  100.8   0.0    8.2e-29   99.5   0.0    1.8  1  EFG_C        Elongation factor G C-terminus
    7.5e-17   61.5   0.1    2.1e-16   60.1   0.1    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.4e-06   28.1   0.1    4.6e-06   26.5   0.0    1.8  2  RF3_C        Class II release factor RF3, C-terminal domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.8   0.1     9e-70   2.7e-66       2     193 ..       9     287 ..       8     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.8 bits;  conditional E-value: 9e-70
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-S CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.....ketkkylinliDtPGHvdFskevirglrvlD 95 
                 r+rnigi +h+D+GKtT+t+r+l++tg  +k ge++++++++D++++E+ergiTi+saa++ +     k+ + ++in+iDtPGHvdF+ ev+r++rvlD
  EHT99492.1   9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMAQEQERGITITSAATTAFwsgmaKQFEPHRINIIDTPGHVDFTIEVERSMRVLD 107
                 689**********************************9***************************9988****************************** PP

                 EEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH......................................... CS
    GTP_EFTU  96 gavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk......................................... 153
                 gav+v +av Gv+pq+e+v+r+a+k++vp+i f+NKmDr++a++ ++v +++++l ++                                         
  EHT99492.1 108 GAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVGQIESRLGATpvplqiaigaeenftgvvdlikmkainwndqdagvtfdyee 206
                 *******************************************************999***************************************** PP

                 ..........................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 ..........................................eeklekygekgekevpvvfgSalkgegvktllealvellp 193
                                                           +++l++ + k+ +++ v +gSa+k++gv+++l+a+ve+lp
  EHT99492.1 207 ipanlqelaeewrgklieaaaeaseelmekffsgeelteeeiKKALRQRVLKN-EIILVTCGSAFKNKGVQAMLDAVVEYLP 287
                 ***********************999999999999999877777777777777.5*************************98 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   2.1e-48   6.2e-45       1     121 []     486     609 ..     486     609 .. 0.98

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 2.1e-48
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT...TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE-- CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle...egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslh 96 
                 pqVayrE+ir +v+++e+k++kqsgg+gqy++v+++++Ple   + +g+efv+++kgg++p e+i+av+kG+qe+lk+Gplag+pv+d+ v+L+ gs+h
  EHT99492.1 486 PQVAYREAIRSKVTGIEGKHAKQSGGRGQYGHVVIDMYPLEpgsNPKGYEFVNDIKGGVIPGEFIPAVDKGIQEQLKSGPLAGYPVVDLGVRLHFGSYH 584
                 8****************************************887789**************************************************** PP

                 TTTC-HHHHHHHHCHHHHHHHHCC- CS
      EFG_IV  97 evdsseaafkpaarralkeallkAs 121
                 +vdsse+afk aa+ a+k++++kA+
  EHT99492.1 585 DVDSSELAFKLAASIAFKDGFKKAQ 609
                 ***********************96 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   3.2e-37   9.6e-34       1      75 []     411     485 ..     411     485 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 3.2e-37
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75 
                 fPePvis+a+epk+kad++k++ aL rl++EDp++rv +dee+++ti++GmGelHl+i+v+r+kre++ve+++gk
  EHT99492.1 411 FPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485
                 8**********************************************************************9985 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   2.7e-32   8.2e-29       1      87 [.     611     696 ..     611     698 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 2.7e-32
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkld 87 
                 vllEPi+kve+e+pee++g+vi+dls+rrG +++ e++  + v i+ae+Pl+e++g+at+LrslTkG++s+smef +Y+ +p+++++
  EHT99492.1 611 VLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESN-ATGVQIHAEVPLSEMFGYATQLRSLTKGRASYSMEFLKYDDAPNNVAQ 696
                 59************************************.999*****************************************9987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1   6.9e-20   2.1e-16       1      74 []     331     398 ..     331     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 6.9e-20
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G +++ rvysG+++ Gd+v +  + +s +   +r +++  +h++++e++ +++aG+i+a++gl+d +i+Gdtl+
   EHT99492.1 331 GNLTFFRVYSGVVNSGDTVLN--SVKSAR---ERFGRIVQMHANKREEISEVRAGDIAAAIGLKD-VITGDTLC 398
                  6689*****************..998888...*********************************.*******8 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   4.5e+03      31      57 ..     241     267 ..     234     268 .. 0.85
   2 !   26.5   0.0   1.5e-09   4.6e-06      15      91 ..     420     496 ..     411     515 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
                 HHHHHCTSSEEEEET.TSS-EEEEESS CS
       RF3_C  31 eqLaeEGavqvfkeeeageelilgaVG 57 
                 e+L+eE + + ++++  ++e+il + G
  EHT99492.1 241 EELTEEEIKKALRQRVLKNEIILVTCG 267
                 689999999999999899999998777 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.5e-09
                 EEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE- CS
       RF3_C  15 vrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwves 91 
                 v+ k    + ++  +l  La+E       ++e+++++i++ +G+L ++++ +R+k+E++ve+++ + ++ +   ++s
  EHT99492.1 420 VEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRS 496
                 55555666666777788999988654444455899****************************99888877766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5327.46
//
Query:       EHT99493.1  [L=394]
Description: translation elongation factor Tu [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-59  198.8   0.0    8.8e-59  198.3   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
      1e-33  116.0   0.0      2e-33  115.0   0.0    1.5  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    2.1e-19   69.7   4.7    4.6e-19   68.6   4.7    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    9.9e-05   22.4   0.0     0.0002   21.4   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.034   13.8   0.2      0.094   12.3   0.0    1.7  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
       0.37   10.6   2.5       0.83    9.5   2.5    1.5  1  Lsm_C        Lsm C-terminal


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   0.0   2.9e-62   8.8e-59       2     193 ..      11     201 ..      10     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 2.9e-62
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                  ++n+g+ighvDhGKtTLt ++++ + +++  +++a +  ++D+++eE++rgiTi++a++++e  t +++++++D+PGH+d++k++i+g++++Dga+lv
  EHT99493.1  11 LHVNVGTIGHVDHGKTTLTAAITTVLAKTNGGQARAFD--QIDSTPEEKARGITINTAHVEYE--TPSRHYAHVDCPGHADYVKNMITGAAQMDGAILV 105
                 599*************************9998888864..5**********************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB........THHHHHHHHH CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge........gvktllealv 189
                 v+a++G++pqt+e++ l +++gvp iivf+NK+D++ ++el e+ve+  ++l      l++y + g+ ++p+v+gSalk+         ++ +l + l+
  EHT99493.1 106 VAATDGPMPQTREHILLGRQVGVPyIIVFLNKCDMVdDEELLELVEMEVRDL------LSQYDFPGD-DTPIVRGSALKALegnpeweeKIVELANHLD 197
                 ************************************99**************......********6.************9777777777778888888 PP

                 HHSH CS
    GTP_EFTU 190 ellp 193
                 +++p
  EHT99493.1 198 NYIP 201
                 8887 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   6.7e-37     2e-33       1     111 [.     298     392 ..     298     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 6.7e-37
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  +ikphtkfe++vy+l+k+   rhtp+++gYrp++y+rt+dvtg  veL       +e+v     e+v+pGdn+++ v+li+pia+++g       rFa
   EHT99493.1 298 TIKPHTKFESEVYVLSKDeggRHTPFFKGYRPQFYFRTTDVTG-SVEL-------PEGV-----EMVMPGDNIKMVVTLIHPIAMDEGL------RFA 376
                  59*****************************************.9***.......9999.....*************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iReggrTv+aGvv ++
   EHT99493.1 377 IREGGRTVGAGVVAKV 392
                  **************98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   4.7   1.5e-22   4.6e-19       1      73 [.     225     293 ..     225     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.5e-22
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtv++grv++G++k+Gdev+i+g +dt k    ++ +++e+f++ +d+  ag+n+Gv++++++ ed i++G++l
   EHT99493.1 225 GTVVTGRVERGVVKVGDEVEIVGiKDTAK----STCTGVEMFRKLLDQGQAGENCGVLLRGIKRED-IQRGQVL 293
                  9**********************999955....5********************************.******9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.8e-08    0.0002       2     112 ..      15     134 ..      14     137 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.8e-08
                 EEEEESTTSSHHHHHHHHHT..............S..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg..............e..kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 v+ +G+   GK+tL  a+t               +      ++  g T+++ + ++++  +++  vD+pG  +       +++ +    ++d ++lvv 
  EHT99493.1  15 VGTIGHVDHGKTTLTAAITTvlaktnggqarafdQidSTPEEKARGITINTAHVEYETPSRHYAHVDCPGHAD------YVKNMITGAAQMDGAILVVA 107
                 899****************5555555555544432213344555588888888888877799********333......566667777789**999999 PP

                 TTTTCSHHHHHHHHHHHHHTTSEEEEEE CS
    MMR_HSR1  85 aseeklkpldeeleelleeakkplilvl 112
                 a+ ++  p+ +e   l ++ + p+i+v+
  EHT99493.1 108 AT-DGPMPQTREHILLGRQVGVPYIIVF 134
                 77.5566666666666677888877653 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.83   2.5e+03       8      21 ..      20      33 ..      14      45 .. 0.67
   2 ?   12.3   0.0   3.2e-05     0.094     103     171 ..      90     159 ..      80     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.83
                STTCCHHHHHHHHH CS
        cobW  8 flGsGKTtLlnhll 21
                 +  GKTtL  +++
  EHT99493.1 20 HVDHGKTTLTAAIT 33
                55569999977665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.2e-05
                 SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC..HHHHHHHHHHHHT CS
        cobW 103 eeelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldeeallekleerlrqlnp 171
                 ++ ++ ++++d+ + vv a+     +++++ ++++q+ +  ++v lnK+D++d+e+lle +e ++r+l +
  EHT99493.1  90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVfLNKCDMVDDEELLELVEMEVRDLLS 159
                 556778999**********999899999999********9987758***********9*99999998765 PP

>> Lsm_C  Lsm C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5   0.00028      0.83      13      42 ..     231     260 ..     227     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00028
                 ...TTTEEEETTTTEEEETTTEEEETTEEE CS
       Lsm_C  13 nlrpglVkvieeanvvvvldrikVsekGVe 42 
                 ++++g+Vkv +e+++v + d+ k +  GVe
  EHT99493.1 231 RVERGVVKVGDEVEIVGIKDTAKSTCTGVE 260
                 7899*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2957.77
//
Query:       EHT99494.1  [L=64]
Description: bacterioferritin-associated ferredoxin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-13   48.3   0.9    1.2e-12   48.0   0.9    1.1  1  Fer2_BFD  BFD-like [2Fe-2S] binding domain
    0.00097   19.1   0.0     0.0012   18.8   0.0    1.2  1  HRDC      HRDC domain


Domain annotation for each model (and alignments):
>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.9   1.3e-16   1.2e-12       1      51 []       2      52 ..       2      52 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.3e-16
    Fer2_BFD  1 iVCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLae 51
                +VC C++++++++r+++rr + ++++++++ +  g +Cg+C++++++i++e
  EHT99494.1  2 YVCLCNAISDKTLREVVRRYQPKSIQQLRQIVPMGKQCGKCIRDARAIMDE 52
                7****************9999***************************986 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-07    0.0012      28      55 ..      10      38 ..       8      52 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-07
                -HHHHHHHHHH.---SHHHHHTSTTT-HH CS
        HRDC 28 pdktLleiAek.lPttleeLlqiegvgkr 55
                +dktL+e++++ +P++ ++L+qi  +gk+
  EHT99494.1 10 SDKTLREVVRRyQPKSIQQLRQIVPMGKQ 38
                8**********************888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 484.75
//
Query:       EHT99495.1  [L=157]
Description: bacterioferritin, iron storage and detoxification protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-38  129.5   4.4    1.1e-37  129.1   4.4    1.2  1  Ferritin  Ferritin-like domain
     0.0041   16.8   0.1     0.0071   16.0   0.1    1.4  1  DUF1241   Protein of unknown function (DUF1241)


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   4.4   1.2e-41   1.1e-37       1     142 []       8     144 ..       8     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 1.2e-41
                 HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSSCS.SHHHHHHHHHHHHHHHHHH CS
    Ferritin   1 ikaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapkefg.sveevleaalehekkvtes 98 
                 i +Ln++l +el+a++qy+ +a+++k++gl +l+   ++++++e++hadk +eril+l+g p+l++    +i      g +v e+l+ +l++e +  + 
  EHT99495.1   8 ISHLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGRLRI------GeDVGEMLQSDLNLELEGAKD 100
                 579*********************************************************************......88******************* PP

                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  99 lrelielaeeegDpatadfledfleeqeeheweleallekleri 142
                 lre+i++a++++D++++d++  +le++e+h++++e+ l+ + ++
  EHT99495.1 101 LREAIAYADKVHDYVSRDMMIAILEDEEHHIDWIETELDLISKM 144
                 ***************************************99876 PP

>> DUF1241  Protein of unknown function (DUF1241)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     8e-07    0.0071      24      80 ..      94     150 ..      83     157 .] 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8e-07
     DUF1241  24 dvaaaqtLraalskaekesPgltqdlvkgllkkkelsvnlneslLrlqgtadteeyk 80 
                 +++ a++Lr+a++ a+k +  ++ d++ ++l+++e +++  e+ L l  ++ +++y 
  EHT99495.1  94 ELEGAKDLREAIAYADKVHDYVSRDMMIAILEDEEHHIDWIETELDLISKMGIQNYL 150
                 477899***************************************999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1288.32
//
Query:       EHT99496.1  [L=257]
Description: type 4 prepilin-like proteins leader peptide processing enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-21   74.0   2.0    1.4e-20   73.2   2.0    1.4  1  DiS_P_DiS      Bacterial Peptidase A24 N-terminal domain
      6e-19   68.4   9.7      6e-19   68.4   9.7    2.1  2  Peptidase_A24  Type IV leader peptidase family


Domain annotation for each model (and alignments):
>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   2.0   1.5e-24   1.4e-20       3      84 .]      12     100 ..      10     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.5e-24
   DiS_P_DiS   3 GlligSFlnvviyrlpk.......kkslvkprSrCpkCghklkwleliPvlSylllrgrCraCkakislryplvElltallflllalkf 84 
                 G ++gSFl ++++r+          +sl++p+S+C  C++++ w++ +P++S+l+lrg Cr C++++ l  +l+El+ all+llla+ f
  EHT99496.1  12 GGALGSFLALACQRFHTsasprrwLQSLWTPPSHCSYCRRTILWHDSVPLISWLWLRGHCRFCSHPVGLLPVLFELTGALLCLLLAYLF 100
                 7899**********744555555444*********************************************************999865 PP

>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.24   2.2e+03      41      62 ..      78      99 ..      58     108 .. 0.64
   2 !   68.4   9.7   6.7e-23     6e-19       2     104 ..     112     217 ..     111     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
  Peptidase_A24 41 lglpnlaqavlgalvgalvlll 62
                   +gl+ ++  + gal+ +l+ +l
     EHT99496.1 78 VGLLPVLFELTGALLCLLLAYL 99
                   5555555556666666655555 PP

  == domain 2  score: 68.4 bits;  conditional E-value: 6.7e-23
  Peptidase_A24   2 vlltillvlsviDldtrtlpdeltlpllllgvlfaqllllglpnlaqavlgalvgalvllli.....slvdeqamGgGDvklaavlgaflgwerll 92 
                    ++ ++llvl++iD ++ +lpd lt +ll+lg+     + ++++++ +a+ g++ g++ l+l+      +++++++G GD+kl+a+lga++gw++l+
     EHT99496.1 112 LASCLLLVLAAIDQRHFLLPDVLTHALLWLGLSRF--MFFQPLTVSSAIGGVMFGYGSLWLLagifqQVTRRKGLGCGDIKLFAALGAWCGWQALP 205
                    567899*************************9998..99**********************744444444777*********************** PP

  Peptidase_A24  93 lavlvaillgav 104
                    ++ l a+ ++++
     EHT99496.1 206 FIALTACTTALI 217
                    *******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1969.67
//
Query:       EHT99497.1  [L=103]
Description: 30S ribosomal subunit protein S10 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-35  120.9   0.1    2.3e-35  120.7   0.1    1.0  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.1   1.3e-39   2.3e-35       1      97 [.       7     100 ..       7     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.3e-39
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsve 96 
                    rirlk++d++l+++++ +iv++ak++g++v+gp+plPt+++r+tvl sphv+k+ r+q+eirthkRl+di ++t++t+d+l++   l+l +gV+v+
     EHT99497.1   7 RIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMR---LDLAAGVDVQ 99 
                    8**********************************************************************************...*********9 PP

                    E CS
  Ribosomal_S10  97 v 97 
                    +
     EHT99497.1 100 I 100
                    7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 783.61
//
Query:       EHT99498.1  [L=209]
Description: 50S ribosomal subunit protein L3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-14   53.1   2.9    2.4e-14   53.1   2.9    2.7  3  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.013   2.4e+02      72      94 ..      20      42 ..       2      65 .. 0.76
   2 !   53.1   2.9   1.3e-18   2.4e-14     209     290 ..      98     182 ..      41     186 .. 0.86
   3 !    1.4   0.0    0.0071   1.3e+02     321     344 ..     183     206 ..     180     209 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.013
                  EEEEEEEEEC--EEEEEEEEEEE CS
  Ribosomal_L3 72 vveavtvvetppmvivgvvgyve 94
                  v  +vtv+e ++ ++ +v+g+++
    EHT99498.1 20 VSIPVTVIEVEANRVTQVKGLEN 42
                  55679999999999999988865 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 1.3e-18
                   CCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS..SSS-S-SS-S.SSSS--TTS--SEEESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 209 aavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg..lRkvaaigaw.dparVsstvaraGqkGyhhRtelnkkiyrigk 290
                    ++F++ + +Dv+g  kGkGf G+vkRW ++ + ++++ +  +R +++ig    p++V  + ++aGq G+ + t   + + r+++
    EHT99498.1  98 VEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSlsHRVPGSIGQNqTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDA 182
                   568999999******************************999********86269***************999999999999876 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.0071
                   TSCEEEEES--SSSTTEEEEEEE- CS
  Ribosomal_L3 321 kndfilvkGsvpGpkkrlvklrks 344
                   + +++lvkG+vpG     + ++++
    EHT99498.1 183 ERNLLLVKGAVPGATGSDLIVKPA 206
                   57899********98777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1527.59
//
Query:       EHT99499.1  [L=201]
Description: 50S ribosomal subunit protein L4 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-63  213.5   1.0    2.3e-63  213.4   1.0    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   1.0   1.3e-67   2.3e-63       2     191 ..      13     198 ..      12     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 213.4 bits;  conditional E-value: 1.3e-67
                   EE-HHHHSS---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHHH CS
  Ribosomal_L4   2 eLspkvFaapirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrsa 98 
                   ++s+ +F+ ++++ l+h++vvay + +rqgt ++k+r+ev+gsg+k+w+QKGtGrAR gs++spi+r+Ggv+++ kp +d+s+k+nkK++r Al+s+
    EHT99499.1  13 TVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKP-QDHSQKVNKKMYRGALKSI 108
                   58899***********************************************************************9.******************* PP

                   HHHHHHTT-EEEES---.-SS--HHHHHHHHHHTT-TTSSEEEEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHHHH CS
  Ribosomal_L4  99 LsakakqglllvvdnlepleesktkelvellkklglksksvLivvsekdenlvlaarnlpgvevieveslnvydllkadkvvitksaveklee 191
                   Ls+ ++q++l+vv++++ +e +ktk l++ lk + l  + vLi+++e denl+laarnl +v+v ++ +++  +l+  dkvv+t +av+++ee
    EHT99499.1 109 LSELVRQDRLIVVEQFS-VEAPKTKLLAQKLKDMAL--EDVLIITGELDENLFLAARNLYKVDVRDAAGIDPVSLIAFDKVVMTADAVKQVEE 198
                   ****************9.******************..****************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1518.65
//
Query:       EHT99500.1  [L=100]
Description: 50S ribosomal subunit protein L23 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-31  106.6   3.8    7.1e-31  106.4   3.8    1.0  1  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   3.8   3.9e-35   7.1e-31       1      86 []       9      95 ..       9      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 3.9e-35
                   SSEEEE--SHHHHHHHTT.E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSSEEBE--EEEEEEEESSS-SSS. CS
  Ribosomal_L23  1 dvilkPvitEkstklaek.nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrkvgrrksyKkaiVtLkegekidl 86
                   +v+++P+++Ek+ +++ek n++v++Vakda+K ei +aveklF+V+V++Vntl+vkgk+kr+g+++grr+++Kka+VtLkeg+++d+
     EHT99500.1  9 KVLRAPHVSEKASSAMEKtNTIVLKVAKDATKAEIVAAVEKLFEVEVKDVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDF 95
                   5899*************9889**************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 874.01
//
Query:       EHT99501.1  [L=273]
Description: 50S ribosomal subunit protein L2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-55  185.3   3.8    6.9e-55  184.6   3.8    1.3  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    1.9e-34  117.5   1.1    8.6e-34  115.3   0.6    2.1  2  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   3.8   7.7e-59   6.9e-55       2     126 .]     126     249 ..     125     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 184.6 bits;  conditional E-value: 7.7e-59
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B.SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS--- CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvakegkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrpkv 96 
                      Gn+lp++nip+G++vhn+e+kpgkgg++arsaG+y+q+va+eg++vt++l+Sge+rkv+++crAt+G+v+n+eh+ + lgkAg++rw+g+rp+v
      EHT99501.1 126 AGNTLPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAREGSYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGATRWRGVRPTV 220
                     7********************************************************************************************** PP

                     -SSSS-TTTSSS--SSSS--SSSSTEETTC CS
  Ribosomal_L2_C  97 rGvamnpvdHphGGGeGktksrkapvspwg 126
                     rG+amnpvdHphGGGeG++ ++ +pv+pwg
      EHT99501.1 221 RGTAMNPVDHPHGGGEGRNFGK-HPVTPWG 249
                     *******************999.9*****8 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.6   9.6e-38   8.6e-34       1      76 [.      42     117 ..      42     118 .. 0.98
   2 ?   -0.2   0.0      0.11   9.7e+02      35      52 ..     139     156 ..     131     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 9.6e-38
                   TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEEEEE--SS--SS-EE- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekryiiapeglkvGdtvv 76 
                   Grnn+grit+rh+ggGhk+ yrl+dfkrnk++++++V+++eyDp+RsA+iAlv y+dge+ryi+ap+glk+Gd + 
    EHT99501.1  42 GRNNNGRITTRHIGGGHKQAYRLVDFKRNKDGIPATVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQ 117
                   9************************************************************************985 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
                   EEEEEEE--TT-SS-EEE CS
  Ribosomal_L2  35 gkVveieyDpgRsApiAl 52 
                    +V ++e  pg+ ++iA+
    EHT99501.1 139 STVHNVEMKPGKGGQIAR 156
                   579999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2219.90
//
Query:       EHT99502.1  [L=92]
Description: SSU ribosomal protein S19p (S15e) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-35  121.1   0.0    1.5e-35  120.9   0.0    1.0  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   8.5e-40   1.5e-35       1      81 []       3      83 ..       3      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 8.5e-40
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81
                   rslkkgpf++ +llkkv+ka ++++k++++t+sR+stI+P+m+glt++V+nG+++vpv +++emvGhkLgEF+pTr++++h
     EHT99502.1  3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGH 83
                   89********************9*******************************************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 671.00
//
Query:       EHT99503.1  [L=110]
Description: 50S ribosomal subunit protein L22 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-34  117.5   2.0      3e-34  117.4   2.0    1.0  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   2.0   1.7e-38     3e-34       1     103 []       5     108 ..       5     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.7e-38
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT.-GGGEEEEEEEEEEEEEEEEEEEESTTEEEEEEEEE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgl.dvdslvIeeiqvnkgpklkrrtyrArGrinpirksp 95 
                    a+++++r s +k+r va+lIrg+kv++Al++L +++kkaa  v+k+L++a+anae++ + d d+l +++i+v++gp +kr+++rA+Gr+++i k++
     EHT99503.1   5 AQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGaDIDDLKVAKIFVDEGPSMKRIMPRAKGRADRILKRT 100
                    67899**************************************************87779************************************ PP

                    EEEEEEEE CS
  Ribosomal_L22  96 chievvlk 103
                    +hi+vv++
     EHT99503.1 101 SHITVVVS 108
                    ******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 903.84
//
Query:       EHT99504.1  [L=232]
Description: 30S ribosomal subunit protein S3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-41  141.2   0.9    2.1e-41  140.3   0.9    1.5  1  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    1.5e-19   69.6   3.9    3.4e-19   68.4   3.9    1.6  1  KH_2            KH domain
    2.9e-05   23.8   0.3      6e-05   22.8   0.3    1.5  1  KH_4            KH domain


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.9   3.6e-45   2.1e-41       1      83 []     120     202 ..     120     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 3.6e-45
                     HHHHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   1 iaeqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvplhtlradidyavaeaktkyGiiGvkVwI 83 
                     i +qle+rv fRramk+a+++am+ gakGik++vsGrLggaeiar+e+y+eGrvplhtlradidy ++ea+t+yG+iGvkVwI
      EHT99504.1 120 ITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
                     789*******************************************************************************9 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   3.9   5.8e-23   3.4e-19       1      78 []      38     111 ..      38     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 5.8e-23
                 HHHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTGG CS
        KH_2   1 eipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkkpel 78 
                 +++++l++e++ka vs+++Ier+a+ ++++i++++pgivIGk+G++++k+++ + k+     g ++++ni +V+kpel
  EHT99504.1  38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRTVVAKIA----GVPAQINIAEVRKPEL 111
                 69********************************************************....9*************96 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.3     1e-08     6e-05       7      62 ..      42      95 ..      38     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1e-08
        KH_4  7 ilkalvddpeevevtee.eeeeeveielnvegedlGrvIGkrGrtldAlqylvsaaa 62
                +l++ +   ++ +v+   +e+  ++i++++++   G+vIGk+G+ +  l+++v  +a
  EHT99504.1 42 YLTKEL---AKASVSRIvIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRTVVAKIA 95
                444433...34555555567899*****************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1957.16
//
Query:       EHT99505.1  [L=136]
Description: 50S ribosomal subunit protein L16 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-47  159.2   0.6    5.6e-47  159.0   0.6    1.0  1  Ribosomal_L16  Ribosomal protein L16p/L10e
  ------ inclusion threshold ------
       0.29   11.2   1.8          9    6.4   0.2    2.5  3  DUF982         Protein of unknown function (DUF982)


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.6   6.3e-51   5.6e-47       1     132 []       4     131 ..       4     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 6.3e-51
                    HXSSXXBSSSXXSSTSXXXSXXXXXESXEEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEE CS
  Ribosomal_L16   1 pkrkkyrKsrkryirgvstkgtklefgdygLvalekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarv 96 
                    pkr+k+rK +k  +rg + +gt ++fg++gL+a  +g+lta+++eaar+a++r +k  r++k+wirvfp++p+t+k+ e+RmgkGkG++e+wva +
     EHT99505.1   4 PKRTKFRKVHKGRNRGLA-QGTDVSFGTFGLKAVGRGRLTARQIEAARRAMTRAVK--RQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALI 96 
                    89********95558886.99***********************************..************************************** PP

                    XSSCEEEEETTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  97 kigqiifeikagvneeiakealrraasKlpiktkiv 132
                    ++g++++e+ +gv ee a+ea+++aa+Klpikt +v
     EHT99505.1  97 QPGKVLYEM-DGVPEELAREAFKLAAAKLPIKTTFV 131
                    *********.88*********************997 PP

>> DUF982  Protein of unknown function (DUF982)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.001         9      53      70 ..      44      61 ..      33      63 .. 0.84
   2 ?   -2.7   0.0      0.72   6.5e+03       1      11 [.      76      86 ..      76      89 .. 0.81
   3 ?    3.8   0.0    0.0068        61      53      68 ..     108     123 ..     104     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.001
                S-HHHHHHHHHHHHHHHT CS
      DUF982 53 vpveeARraFiaAareag 70
                +++e+ARra ++A+++ g
  EHT99505.1 44 RQIEAARRAMTRAVKRQG 61
                689***********9876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.72
                EEEEEE-TT.S CS
      DUF982  1 kPVtvklgkgg 11
                kP++v++gkg+
  EHT99505.1 76 KPLEVRMGKGK 86
                7999*999854 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0068
                 S-HHHHHHHHHHHHHH CS
      DUF982  53 vpveeARraFiaAare 68 
                 vp e AR+aF  Aa +
  EHT99505.1 108 VPEELAREAFKLAAAK 123
                 67899*****999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1187.49
//
Query:       EHT99506.1  [L=63]
Description: 50S ribosomal subunit protein L29 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-22   79.1   6.8    1.9e-22   79.0   6.8    1.0  1  Ribosomal_L29  Ribosomal L29 protein
    0.00023   21.2   2.5    0.00028   20.9   2.5    1.1  1  MRP-L47        Mitochondrial 39-S ribosomal protein L47 (MRP-
  ------ inclusion threshold ------
      0.048   13.0   0.6      0.045   13.1   0.6    1.0  1  YjcZ           YjcZ-like protein
       0.12   10.4   1.4       0.12   10.3   1.4    1.0  1  PRTP           Herpesvirus processing and transport protein


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   6.8   4.2e-26   1.9e-22       2      57 .]       5      60 ..       4      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 4.2e-26
                   HHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  2 elrelsdeeLkeklkelkkeLfnLrfqkatgqlenpsrirkvRkdIARikTvlrer 57
                   elre+s+eeL+ +l +l +e+fnLr+q+a+gql++ + +++vR+d+AR+kT+l+e+
     EHT99506.1  5 ELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEK 60
                   9******************************************************8 PP

>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   2.5   6.3e-08   0.00028      24      86 ..       2      59 ..       1      60 [. 0.93

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.3e-08
     MRP-L47 24 aaeeLrkksfedLhklwyvllkekNmLlteeeellrkqekmpsperlkkvkesMeniktVlke 86
                +a+eLr+ks+e+L+   ++ll+e+  L      +++ + + +++ +lk+v++  +++kt l+e
  EHT99506.1  2 KATELREKSVEELNTELLNLLREQFNL-----RMQAASGQLQQSHLLKQVRRDVARVKTLLTE 59
                589*********************999.....778888889999****************998 PP

>> YjcZ  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6     1e-05     0.045      90     135 ..       8      53 ..       1      62 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1e-05
        YjcZ  90 kasaapklaqalaalaeefaarverkekaltqrellvqarrhseqi 135
                 ++s+ +  ++ l+ l e+f+ r++ +  +l+q  ll+q+rr++ ++
  EHT99506.1   8 EKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARV 53 
                 334444446678999**************************98776 PP

>> PRTP  Herpesvirus processing and transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   2.8e-05      0.12      41      89 ..       9      59 ..       1      62 [. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.8e-05
        PRTP 41 lkvlkLekkllpelkaQnalelsalsleLe..llLenlkeelelldealee 89
                  v +L  +ll+ l++Q +l++ a s +L+  +lL+++++++++++++l+e
  EHT99506.1  9 KSVEELNTELLNLLREQFNLRMQAASGQLQqsHLLKQVRRDVARVKTLLTE 59
                57999************9877666665554339***********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 523.22
//
Query:       EHT99507.1  [L=84]
Description: 30S ribosomal subunit protein S17 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-34  117.4   0.8    2.5e-34  117.2   0.8    1.1  1  Ribosomal_S17  Ribosomal protein S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.8   1.4e-38   2.5e-34       1      67 [.      10      76 ..      10      77 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.4e-38
                   EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEE CS
  Ribosomal_S17  1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvv 67
                   G+Vvsdkm+k++vV++er+vkhp y+k++kr++k+++hdenn++ +GD+V+i+ecrPlSktk++++v
     EHT99507.1 10 GRVVSDKMQKSAVVAIERFVKHPIYGKFIKRTTKLHIHDENNECGIGDVVEIRECRPLSKTKSWTLV 76
                   9****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 753.23
//
Query:       EHT99508.1  [L=123]
Description: 50S ribosomal subunit protein L14 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-55  185.2   1.0    4.1e-55  185.1   1.0    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e
  ------ inclusion threshold ------
      0.062   11.6   0.0      0.071   11.4   0.0    1.0  1  Gp58           gp58-like protein


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.1   1.0   4.6e-59   4.1e-55       1     122 []       1     123 []       1     123 [] 0.98

  Alignments for each domain:
  == domain 1  score: 185.1 bits;  conditional E-value: 4.6e-59
                    ..CSS-EEE--SSSSBSEEEEEEETT-.---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TT.S-BSS CS
  Ribosomal_L14   1 miqlktrlkvaDNsgakevecikvlggkkrkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkk.geplG 95 
                    miq +t+l+vaDNsga++v+cikvlgg++r++a vGdii v++k+a+p+gkvkkgdv+kavvvrt+k vrr+dGsvirfd na+V+ln++ ++p+G
     EHT99508.1   1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKVTIKEAIPRGKVKKGDVLKAVVVRTRKGVRRPDGSVIRFDGNACVILNNNsEQPIG 96 
                    9**************************************************************************************977489*** PP

                    -.B-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  96 trifgpvarelrekkflkivslApevl 122
                    trifgpv+relr++kf+ki+slApevl
     EHT99508.1  97 TRIFGPVTRELRTEKFMKIISLAPEVL 123
                    *************************96 PP

>> Gp58  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.9e-06     0.071     343     393 ..      33      85 ..      23     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.9e-06
        Gp58 343 rqsgdsiklaikaklpqskmsakeiisainL.ngyGvri.sGeriaLdGnttv 393
                 ++ gd ik+ ik+  p  k+   +++ a+ +  ++Gvr   G  i +dGn+ v
  EHT99508.1  33 AGVGDIIKVTIKEAIPRGKVKKGDVLKAVVVrTRKGVRRpDGSVIRFDGNACV 85 
                 5789************************9873578**86379********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 998.12
//
Query:       EHT99509.1  [L=104]
Description: 50S ribosomal subunit protein L24 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-24   84.5   0.1    5.1e-24   84.5   0.1    1.6  2  ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L
    4.2e-05   23.3   2.7    9.8e-05   22.2   2.7    1.7  1  KOW            KOW motif


Domain annotation for each model (and alignments):
>> ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.38   3.4e+03      51      64 ..      19      34 ..       6      35 .. 0.55
   2 !   84.5   0.1   5.7e-28   5.1e-24       1      65 []      39     103 ..      39     103 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.38
  ribosomal_L24 51 dgk..kvRvskksgee 64
                   +gk  kv+   +sg++
     EHT99509.1 19 KGKrgKVKNVLSSGKV 34
                   3443345555555555 PP

  == domain 2  score: 84.5 bits;  conditional E-value: 5.7e-28
  ribosomal_L24   1 vnvvkkhvkpsqqneq.GgiiekEapIhvSnVmlvdpkcgkptrvgfrlkedgkkvRvskksgeei 65 
                    +n+vkkh+kp ++ +q Ggi+ekEa+I vSnV+l++  +gk++rvgfr+ edgkkvR++k++ e+i
     EHT99509.1  39 INLVKKHQKPVPALNQpGGIVEKEAAIQVSNVALFNAATGKADRVGFRF-EDGKKVRFFKSNSETI 103
                    69********9987777******************************99.6********9987765 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   2.7   1.1e-08   9.8e-05       2      32 .]       8      37 ..       7      37 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-08
                TSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  2 GdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                 d+V+V+ G++kGk GkV+ v     +V+v+
  EHT99509.1  8 NDEVIVLTGKDKGKRGKVKNVLSSG-KVIVE 37
                69*******************9988.77765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 733.40
//
Query:       EHT99510.1  [L=179]
Description: 50S ribosomal subunit protein L5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-41  138.4   0.0    9.8e-41  137.9   0.0    1.3  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    6.1e-29  100.1   0.3    1.1e-28   99.3   0.3    1.4  1  Ribosomal_L5    Ribosomal protein L5
  ------ inclusion threshold ------
      0.042   13.7   0.1       0.24   11.2   0.0    2.2  2  DUF2862         Protein of unknown function (DUF2862)


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0   1.6e-44   9.8e-41       1      94 []      84     177 ..      84     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 1.6e-44
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttaktdeearallkelgipf 94 
                     piG+kvtLrge+m+ef+++l+++++pr+rdF+G+s++sfdgrGn+s+G++eqiifpei+ydk+++++G+diti+ttak+d+e rall ++ +pf
      EHT99510.1  84 PIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDDEGRALLAAFDFPF 177
                     8********************************************************************************************9 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.3   1.8e-32   1.1e-28       1      57 []      24      80 ..      24      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.8e-32
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  +vMqvPr+eKi++nmgvGea +dkkll++aa++La+I+GQkP +tka+ks+a+FkiR
    EHT99510.1 24 SVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR 80
                  59******************************************************9 PP

>> DUF2862  Protein of unknown function (DUF2862)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.11   6.8e+02      11      31 ..       9      29 ..       2      54 .. 0.68
   2 ?   11.2   0.0   4.1e-05      0.24      25      57 ..      69     101 ..      40     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.11
                -S---TTHHHHBT-..EEEEE CS
     DUF2862 11 rdrvskelveklkkepvgtik 31
                +d v ++l+++ + ++v ++ 
  EHT99510.1  9 KDEVVQKLMSEFGYNSVMQVP 29
                677778888877777766664 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.1e-05
                 ..EEEEEEEEE-SSSSEEEEEEETTS-EEEEET CS
     DUF2862  25 epvgtikdfKmtDGsgiGvvvkledgtktWFFe 57 
                 +++  + +fK+  G  iG+ v+l  +    FFe
  EHT99510.1  69 KARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE 101
                 355689*****************8776655887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1529.21
//
Query:       EHT99511.1  [L=101]
Description: 30S ribosomal subunit protein S14 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-27   93.4   1.8      7e-27   93.0   1.8    1.2  1  Ribosomal_S14  Ribosomal protein S14p/S29e


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   1.8   3.9e-31     7e-27       1      54 []      47     100 ..      47     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 3.9e-31
                    S------SS..CTTT---SSS--SSSEE-GGG-EHHHHHHHTTT...TT-EE-- CS
  Ribosomal_S14   1 klaklprnssptrirnrCrvtGrprGvirkfgLsRicfRelAlkgelpGvkKaS 54 
                    kl++lpr+ssp+r+rnrCr tGrp+G++rkfgLsRi+ Re+A++ge+pG+kKaS
     EHT99511.1  47 KLQSLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKAS 100
                    79***************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 899.96
//
Query:       EHT99512.1  [L=130]
Description: 30S ribosomal subunit protein S8 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-48  163.3   0.2    2.7e-48  163.1   0.2    1.0  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.2   1.5e-52   2.7e-48       1     126 [.       5     129 ..       5     130 .] 0.98

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 1.5e-52
                   -HHHHHHHHHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEECCCCCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGGTS CS
  Ribosomal_S8   1 DpiadmltrirNaekakkeevevpasklkeeilkvLkeeGyikdfeveeekkkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvlnglG 97 
                   DpiadmltrirN+++a+k  v++p+sklk +i++vLkeeG+i+df++e ++k +++++lky + +k v+++++rvs+pg+r+Y+k++elpkv+ g+G
    EHT99512.1   5 DPIADMLTRIRNGQAANKVAVTMPSSKLKLAIANVLKEEGFIEDFKIEGDTKLELELTLKYFQ-GKAVVESIQRVSRPGLRIYKKKDELPKVMAGMG 100
                   9**********************************************8888888********9.89******************************* PP

                   EEEEEETTEEEEHHHHHHCT--EEEEEEE CS
  Ribosomal_S8  98 iaivsTskGvmtdkeArkkkvGGevlayv 126
                   ia++sTskGvmtd+ Ar++++GGe+++yv
    EHT99512.1 101 IAVISTSKGVMTDRAARQAGLGGEIICYV 129
                   ****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1157.29
//
Query:       EHT99513.1  [L=177]
Description: 50S ribosomal subunit protein L6 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-41  138.8   0.6    1.7e-19   70.3   0.0    2.1  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.1   7.9e-23   1.4e-18       1      76 []      11      82 ..      11      82 .. 0.98
   2 !   70.3   0.0   9.3e-24   1.7e-19       1      75 [.      90     164 ..      90     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 7.9e-23
                  CSTTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  1 iPvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  +P+gv+v+++g q+++++G++geltr+i+++v+v+  + +n++t+++++g    ++ + gt+r+l n m+ GVteg
    EHT99513.1 11 VPAGVEVKLNG-QVISIKGKNGELTRTINDAVEVK--HADNTLTFAPREGYVDGWA-QAGTSRALLNAMVIGVTEG 82
                  7*********8.*******************9999..99*****************.*****************98 PP

  == domain 2  score: 70.3 bits;  conditional E-value: 9.3e-24
                   CSTTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L6   1 iPvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVte 75 
                   ++vg+r+ +kg+ ++l+lG+++++  ++p g+t e++    ++t+iv++g dk+      A+++t+r+++++++kGV++
    EHT99513.1  90 VGVGYRAAVKGNVVNLSLGFSHPVDHQLPAGITAECP----TQTEIVLKGADKQVIgqvaADLRTYRRPEPYKGKGVRY 164
                   79***********************************....************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1513.40
//
Query:       EHT99514.1  [L=117]
Description: 50S ribosomal subunit protein L18 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-43  148.1   4.2    1.4e-43  147.9   4.2    1.0  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.012   15.6   0.1    1.1  1  Ribosomal_L5e   Ribosomal large subunit proteins 60S L5, and 


Domain annotation for each model (and alignments):
>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   4.2   1.6e-47   1.4e-43       1     116 []       1     117 []       1     117 [] 0.97

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 1.6e-47
                     S-CCHHHCHHHHHHTTT--..TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCT..S-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE CS
  Ribosomal_L18p   1 kkkkearkrRhkRirkkls..gtaerprlvvfrsnrhiyaQviddvkgktlasastlekelk..lkstknkeaakkvgeliAerakekgiekvvf 91 
                     ++kk+ar+rR++R+r+kl+  g++   rlvv+r++rhiyaQvi+ + +++l++ast+ek+++  lk+t+nkeaa++vg++iAera ekgi+ v f
      EHT99514.1   1 MDKKSARIRRATRARRKLKelGAT---RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAITeqLKYTGNKEAAAAVGKAIAERAIEKGITGVSF 92 
                     689****************65555...**********************************99899***************************** PP

                     --TTSSS-CHHHHHHHHHHCTSSB- CS
  Ribosomal_L18p  92 DrggykYhGrvaalAdaaReaGlkf 116
                     Dr+g++YhGrv+alAdaaReaGl+f
      EHT99514.1  93 DRSGFQYHGRVQALADAAREAGLQF 117
                     ***********************98 PP

>> Ribosomal_L5e  Ribosomal large subunit proteins 60S L5, and 50S L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   1.4e-06     0.012      35      99 ..      23      85 ..       4     104 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
  Ribosomal_L5e 35 kyRlvVrvtnkdiicqiayakiegdkvlaaayskelpkygvkvgltnyaaaYatglllarrllkk 99
                     RlvV+ t ++i++q+++   +g +vl+aa++ e    +      n  aa a+g  +a+r+++k
     EHT99514.1 23 ATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAITEQLKYTGNKEAAAAVGKAIAERAIEK 85
                   57****************99..7999999988887664443334457889999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 901.30
//
Query:       EHT99515.1  [L=166]
Description: 30S ribosomal subunit protein S5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-30  104.7   0.7    2.3e-30  103.8   0.7    1.4  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    9.3e-30  102.4   3.1    9.3e-30  102.4   3.1    1.9  2  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.7   2.6e-34   2.3e-30       2      72 .]      87     157 ..      86     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 2.6e-34
                     EEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     g + +++v+++pa++GtGiiagga+ravle+aG+++vlak++gs+npinvv+At+++L +++spe vaa+R
      EHT99515.1  87 GAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLGNMKSPEMVAAKR 157
                     77899****************************************************************98 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   3.1     1e-33   9.3e-30       1      64 [.      11      74 ..      11      75 .. 0.98
   2 ?   -1.0   0.0      0.19   1.7e+03      37      51 ..     143     157 ..     141     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 1e-33
                  XEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE- CS
  Ribosomal_S5  1 lkekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpv 64
                  l+ek+++++rv+k++kgGr++sf+al+vvGdgnG+vG+G+gka+ev+ Ai+kA+ekA++n+v v
    EHT99515.1 11 LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMVNV 74
                  79************************************************************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.19
                   EEEEEEESSHHHHHH CS
  Ribosomal_S5  37 GlGvgkakevatAir 51 
                   GlG  k+ e+  A r
    EHT99515.1 143 GLGNMKSPEMVAAKR 157
                   89999****999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1327.98
//
Query:       EHT99516.1  [L=59]
Description: 50S ribosomal subunit protein L30 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-20   70.3   0.1      1e-19   70.1   0.1    1.0  1  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1   5.8e-24     1e-19       1      51 []       5      55 ..       5      55 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 5.8e-24
                   EEEEE-S-STTS-HHHHHHHHHTT-SSTTEEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30  1 lfVtrirsiigvppkvrktLqlLgLrkingtvvklntpsirGmLkkVkhlV 51
                   +++t++rs ig+ pk+++tL +LgLr+i++tv++++tp++rGm++ V+++V
     EHT99516.1  5 IKITQTRSSIGRLPKHKATLVGLGLRRIGHTVEREDTPAVRGMVNAVSYMV 55
                   69***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 479.99
//
Query:       EHT99517.1  [L=144]
Description: 50S ribosomal subunit protein L15 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-31  110.1   1.6    1.5e-31  109.8   1.6    1.1  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27
  ------ inclusion threshold ------
      0.033   13.6   0.8      0.055   12.9   0.4    1.4  1  Ribosomal_L18   Ribosomal protein 60S L18 and 50S L18e


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   1.6   1.6e-35   1.5e-31       2     127 ..      28     143 ..      27     144 .] 0.93

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 1.6e-35
                     GGGTSSTTTTTTTTT-S--......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS....SE.EEE CS
  Ribosomal_L27A   2 GktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikkkdgv.Kvl 95 
                     GktgGrGhkGq++rsg+ +++gfeGGqmplyrrlpk+Gf+++k +  ++++ l+dL      +++        +dl++l++a+++  + ++ Kv+
      EHT99517.1  28 GKTGGRGHKGQNSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRK-AMITTEIRLSDLA-----KVE-----GCIVDLNALKAANIVGVQIEFvKVI 111
                     9**************************************9644.67789********.....444.....257**************99999*** PP

                     --S---.--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  96 gkgeltkklkvkaskfSkkAkekIeaaGGkve 127
                      +ge++++++v+  +++k A+++IeaaGGk+e
      EHT99517.1 112 LSGEVSAPVTVRGLRVTKGARAAIEAAGGKIE 143
                     ******************************97 PP

>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   6.1e-06     0.055      97     119 ..     120     142 ..     114     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-06
  Ribosomal_L18  97 lsvaALrftetararilkaGGei 119
                    ++v  Lr+t+ ara i++aGG+i
     EHT99517.1 120 VTVRGLRVTKGARAAIEAAGGKI 142
                    68999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1123.75
//
Query:       EHT99518.1  [L=443]
Description: preprotein translocase membrane subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.5e-119  396.3  19.5   1.1e-118  396.0  19.5    1.1  1  SecY      SecY translocase
  ------ inclusion threshold ------
      0.091   13.1   0.3       0.36   11.2   0.3    2.0  1  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.0  19.5  1.2e-122  1.1e-118       1     306 []      76     417 ..      76     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: 396.0 bits;  conditional E-value: 1.2e-122
                 BTTSSTCHHHHHHHHHHHHHHHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..............HH.HHHHHHHHHHHHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLltvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg..............lalllivlqltagtvllmwL 85 
                 sifaLGImPyi+asIi+qLltvv p+l e+kkege+gr+ki+q+try t+vla++q++gia++l               ++++++v++l++gt++lmwL
  EHT99518.1  76 SIFALGIMPYISASIIIQLLTVVHPALAEIKKEGEAGRRKISQYTRYGTLVLAIFQSIGIATGLPnmpgmqglvmnpgfAFYFTAVVSLVTGTMFLMWL 174
                 8**********************************************************99776699************779***************** PP

                 HHHHHHHSSTTHHHHHHHHHHHHHHCCHSS-HHHHSS.....THHHHHHHHHHHHHHHHHCHHHHBEEEECBBBSTT........S.S-EEEEETTCCC CS
        SecY  86 gEqitekGiGnGisllifagivarlpkalsglielale...gilallllllvtllvillvvyveeaerripvqyakr..grk..ggqssylPlklnyag 177
                 gEqite+GiGnGis++ifagiva+lp a+ ++ie+a++   ++l lll+ +++++v+++v++ve+++rri v+yakr  gr+  ++qs++lPlk+n+ag
  EHT99518.1 175 GEQITERGIGNGISIIIFAGIVAGLPPAIGHTIEQARQgdlHFLLLLLVAVLVFAVTFFVIFVERGQRRIVVNYAKRqqGRRvyAAQSTHLPLKVNMAG 273
                 *******************************999988888888899999999999999*****************99898999999************* PP

                 SCHHHHHHHHHHHHHCCCCS............TCCCS.....THHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHH CS
        SecY 178 viPiIfassllalpstiaqfl...........lalls.....psvlyvvlyvlliifFayfyteitfnpkevaenlkksggfipgirpgketakyLekv 260
                 viP Ifass++++p+tia+++           +   s     +++lyv+ly++ iifF++fyt+++fnp+e+a+nlkksg+f+pgirpg++ta+y++kv
  EHT99518.1 274 VIPAIFASSIILFPATIASWFgggtgwnwlttI---SmylqpGQPLYVLLYATAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTARYIDKV 369
                 ***********************9997665551...1455578899***************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTTS..T.T.TTHHHHHHHHHHHHHHH CS
        SecY 261 lsritliGalflaliavlpdllgasl.i.gafggtslLivVgvaletv 306
                 ++r+tliGal++++i+++p++++  + + ++fggtslLivV v+++++
  EHT99518.1 370 MTRLTLIGALYITFICLIPEFMRDAMkVpFYFGGTSLLIVVVVIMDFM 417
                 ************************4454479**************986 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3     4e-05      0.36      70      96 ..     217     243 ..     208     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
       Orf78  70 llavvcvlvllyviyYfvilrerqkss 96 
                 +l ++ v vl++++ +fvi  er ++ 
  EHT99518.1 217 FLLLLLVAVLVFAVTFFVIFVERGQRR 243
                 67889999*************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 3419.26
//
Query:       EHT99519.1  [L=38]
Description: 50S ribosomal subunit protein L36 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-21   74.2   8.7    7.1e-21   74.1   8.7    1.0  1  Ribosomal_L36  Ribosomal protein L36


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   8.7     4e-25   7.1e-21       1      38 []       1      38 []       1      38 [] 1.00

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 4e-25
  Ribosomal_L36  1 MKVrssvkkmcegCkvvrRkgrvyviCkknPrhKqRQG 38
                   MKVr+svkk+c++Ck++rR+g+v+viC++ P+hKqRQG
     EHT99519.1  1 MKVRASVKKLCRNCKIIRRDGVVRVICSAEPKHKQRQG 38
                   *************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 308.27
//
Query:       EHT99520.1  [L=118]
Description: 30S ribosomal subunit protein S13 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-35  121.4   6.6    1.5e-33  115.9   6.6    2.0  1  Ribosomal_S13  Ribosomal protein S13/S18
    0.00021   20.2   0.0    0.00022   20.1   0.0    1.1  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.27   10.9   0.0    1.4  1  DUF5053        Domain of unknown function (DUF5053)


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   6.6   2.6e-37   1.5e-33       1     128 []       3     108 ..       3     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 2.6e-37
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    Ri+g++i+++k+ +ialt+i GiG++++k+i++ +++ e+++i+el+ee+i+++++ v++                      +vve+dlrr++  +
     EHT99520.1   3 RIAGINIPDQKHTVIALTSIFGIGKTRSKAICASTGIAENVKISELSEEQIDQLRDAVAK----------------------FVVEGDLRREITLS 76 
                    9***********************************************************......................9************* PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i+Rl+++++yrGlRH+rGl+vRGQrTkt++Rt
     EHT99520.1  77 IKRLMDLGCYRGLRHRRGLPVRGQRTKTNART 108
                    *******************************8 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.6e-08   0.00022     187     240 ..      13      65 ..       4      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.6e-08
                 XXXHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHHHHT CS
        FbpA 187 kdlvkaLvkafqGlspllaeelleragldketsakelseedlerlyealqelle 240
                 k+ v aL + f G++++ ++ +++++g++++ +++elsee++++l++a+ +++ 
  EHT99520.1  13 KHTVIALTSIF-GIGKTRSKAICASTGIAENVKISELSEEQIDQLRDAVAKFVV 65 
                 45556677777.************************************999875 PP

>> DUF5053  Domain of unknown function (DUF5053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.6e-05      0.27      30      52 ..      38      60 ..      36      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.6e-05
     DUF5053 30 GidvngkvatFteeeletLkeAL 52
                Gi  n k  +++ee++++L++A+
  EHT99520.1 38 GIAENVKISELSEEQIDQLRDAV 60
                8999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 941.69
//
Query:       EHT99521.1  [L=129]
Description: 30S ribosomal subunit protein S11 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-54  182.9   0.8      2e-54  182.7   0.8    1.1  1  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.8   1.1e-58     2e-54       1     110 []      19     128 ..      19     128 .. 1.00

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 1.1e-58
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvldkGikavevkvkgpGpGreaalralaraGlkigriedvt 96 
                    Gvah++asfnnti+titd++G+++ +++aGg+g+++srks+P+aaq+aae++ae+v+d+Gik++ev+vkgpGpGre+++ral++aG++i++i+dvt
     EHT99521.1  19 GVAHVHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCAEAVKDYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVT 114
                    9*********************************************************************************************** PP

  Ribosomal_S11  97 PiPhdgirrpkkrr 110
                    PiPh+g+r+pkkrr
     EHT99521.1 115 PIPHNGCRPPKKRR 128
                    *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 865.42
//
Query:       EHT99522.1  [L=206]
Description: 30S ribosomal subunit protein S4 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-32  109.9   2.7    1.4e-31  109.2   1.9    1.7  2  Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
      2e-19   69.0   0.4      4e-19   68.1   0.4    1.5  1  S4            S4 domain
     0.0027   17.5   0.1     0.0048   16.7   0.1    1.4  1  S4_2          S4 domain
  ------ inclusion threshold ------
      0.029   14.2   0.0        1.1    9.0   0.0    2.1  2  DUF4158       Domain of unknown function (DUF4158)


Domain annotation for each model (and alignments):
>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   1.9   3.1e-35   1.4e-31       1      83 []       3      95 ..       3      95 .. 0.99
   2 ?   -1.9   0.0       1.5   6.7e+03      52      71 ..     134     153 ..     132     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 3.1e-35
                  TT-S-CHHHHCHCTS-STSSS..........S-S-SSTTTTS-----CHCHHHHHHHHHHHHHT-SHHHHHHHHHHHHHCCSHHHHHHHHHHH CS
  Ribosomal_S4  1 rykgpkckllRrvgfklflkg..........reyppGqhgkrrkklseYgkqlrekqklkrrYgllekqfrryfkearrirGktgenLlqlLE 83
                  ry gpk kl+Rr+g++lflk+           e++pGqhg+r+ +ls+Yg qlrekqk++r+Yg+le+qfr+y+kea+r++G+tg nLl+lLE
    EHT99522.1  3 RYLGPKLKLSRREGTDLFLKSgvraidskckIEQAPGQHGARKPRLSDYGGQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGANLLALLE 95
                  89****************************99************************************************************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                   HHT-SHHHHHHHHHHHHHCC CS
  Ribosomal_S4  52 rYgllekqfrryfkearrir 71 
                    Y ++ +++  + ++a++ +
    EHT99522.1 134 SYQVSPNDVVSIREKAKKQS 153
                   57888888888888887765 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.4     9e-23     4e-19       2      48 .]      97     143 ..      96     143 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 9e-23
                 EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4   2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48 
                 RLd+v++r+g++ +r eArql++h+ VlVNG+vv+++sy+V+p+Dv+
  EHT99522.1  97 RLDNVVYRMGFGATRAEARQLVSHKSVLVNGRVVNIASYQVSPNDVV 143
                 9********************************************98 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.1e-06    0.0048      24      60 ..     112     148 ..     105     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-06
        S4_2  24 geaKafiaegeVkvNGevetrRgkKlraGdvVeidge 60 
                 +ea+++++ ++V+vNG v +    ++ ++dvV+i ++
  EHT99522.1 112 AEARQLVSHKSVLVNGRVVNIASYQVSPNDVVSIREK 148
                 69*******************************9654 PP

>> DUF4158  Domain of unknown function (DUF4158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.015        68      74     145 ..      27      97 ..      17     101 .. 0.80
   2 ?    9.0   0.0   0.00025       1.1      23      82 ..     133     192 ..     112     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.015
     DUF4158  74 fiaeqlgledpsalakyasreqtrrehlaeIrellgyrpfteadlreleewlaqlA.tetdrpkaLfdaaiee 145
                  i +++++e  +a  + ++r++  +++  ++re+ ++r+      r+++++ +++A  + + ++ L+  +   
  EHT99522.1  27 AIDSKCKIE--QAPGQHGARKPRLSDYGGQLREKQKVRRIYGVLERQFRNYYKEAArLKGNTGANLLALLEGR 97 
                 556666664..4445557899***********************************87778887777766655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00025
     DUF4158  23 ryftLsdadlalinsrrgpanrlgfavqLgyfrylgrflsdleevpaevvefiaeqlgle 82 
                 + +  s+ d+  i+++ ++++r+  a+ L+  r + + l+ +++ ++ v + i e+ +l+
  EHT99522.1 133 ASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKMEGVFKRIPERTDLS 192
                 67999***********************************99999999999999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1591.11
//
Query:       EHT99523.1  [L=329]
Description: RNA polymerase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-24   84.1   0.0    5.3e-24   83.4   0.0    1.4  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain
    4.5e-24   84.0   0.1      8e-24   83.2   0.1    1.4  1  RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C termin
    4.8e-24   84.9   0.1    1.1e-23   83.7   0.1    1.7  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
    0.00015   21.5   0.0        0.8    9.5   0.0    2.7  2  RNA_pol_L_2    RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   1.2e-27   5.3e-24       1      69 []      29     228 ..      29     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.2e-27
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea..................................................................... 30 
                 e+l+rg++htlgNaLRrills++pg+a+++                                                                     
  EHT99523.1  29 EPLERGFGHTLGNALRRILLSSMPGCAVTEveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq 127
                 79***************************************************************9999999999999998888888888888888888 PP

                 ...................................................xx......xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  31 ...................................................pv......vkvn.......tdkdklilevetdgslkPeealkeAlkiL 65 
                                                                    pv      v  +       td dkl++e et+g+++Pe+a+++A++iL
  EHT99523.1 128 hvichltddnasismrikvqrgrgyvpasarihseederpigrllvdacysPVdriaynV--EaarveqrTDLDKLVIEMETNGTIDPEDAIRRAATIL 224
                 888888888888888777777777777777777777777666666666666445555440..04455566***************************** PP

                 xxxx RF
   RNA_pol_L  66 kekl 69 
                  e+l
  EHT99523.1 225 AEQL 228
                 9986 PP

>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.1   1.8e-27     8e-24       3      66 ..     245     308 ..     243     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 1.8e-27
                    ..XXXXXXX--BHHHHT--HHHHHHHHHTT--BHHHHHHS-HHHHTTSSS-SSHHHHHHHHHHH CS
  RNA_pol_A_CTD   3 eeeeelkklsisIeeLeLSvRslNcLkragiktvgeLvklseeeLlkikNlGkKSleEIkekLe 66 
                    e++e  + l +++++LeL+vRs NcLk++ i+++g+Lv+++e eLlk++NlGkKSl+EIk+ L+
     EHT99523.1 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308
                    55666788999**************************************************996 PP

>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.1   2.5e-27   1.1e-23       2     110 ..      60     156 ..      58     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 2.5e-27
                    EEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSECEEGGGCBESSSSCEESSTTSEEEEEETT-E.EEE CS
  RNA_pol_A_bac   2 eieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpgevtagdlkledadveivnpdilIakLrkgqe.lel 96 
                    ei  ++       v+H++++ ++v+ed+leillnlk+l+    + + +++v+l+Ln++g g vta+d+++ d dveiv+p+++I++L++++  +++
     EHT99523.1  60 EI--DG-------VLHEYSTKEGVQEDILEILLNLKGLAV---RVQGKDEVILTLNKSGIGPVTAADITH-DGDVEIVKPQHVICHLTDDNAsISM 142
                    55..66.......9************************85...45555556*******************.*****************99877*** PP

                    EEEEEEESSEECTT CS
  RNA_pol_A_bac  97 eakvkkGiGkehak 110
                    ++kv++G+G+++a+
     EHT99523.1 143 RIKVQRGRGYVPAS 156
                    ***********996 PP

>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00025       1.1      10      24 ..      36      50 ..      33      62 .. 0.83
   2 !    9.5   0.0   0.00018       0.8      40      72 ..     199     231 ..     183     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
                 -HHHHHHHHHHHTTS CS
  RNA_pol_L_2 10 DhTLgnlLrhlllkn 24
                  hTLgn+Lr +ll+ 
   EHT99523.1 36 GHTLGNALRRILLSS 50
                 6**********9964 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00018
                  SEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2  40 pkmnlriqtkssnnpleaLkkalkdlldicdel 72 
                  +k+ + ++t+++++p +a+++a++ l ++++ +
   EHT99523.1 199 DKLVIEMETNGTIDPEDAIRRAATILAEQLEAF 231
                  68899*********************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2332.07
//
Query:       EHT99524.1  [L=128]
Description: 50S ribosomal subunit protein L17 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-34  118.0   0.0    3.1e-34  117.8   0.0    1.1  1  Ribosomal_L17  Ribosomal protein L17


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   1.7e-38   3.1e-34       2      94 .]      21     116 ..      20     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.7e-38
                    HHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHS-...HHHHHHHTHHHHTSS--S--EEEEEEEE-TTTH-EEEEEEE- CS
  Ribosomal_L17   2 lrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrkalayla...lvkkLfeelapryadrngGYtRilklgprrgDaaemailelV 94 
                    +rn++ sL++he I+tTl+kAkelr+++e litlak++++a+rr a+a  +   +v+kLf+el pr+a+r gGYtRilk+g r gD+a+ma++elV
     EHT99524.1  21 FRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRdneIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELV 116
                    8*********************************************999955669****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 955.39
//
Query:       EHT99525.1  [L=122]
Description: uncharacterized DUF1992 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-23   81.2   0.3    8.6e-23   80.3   0.3    1.5  1  DUF1992   Domain of unknown function (DUF1992)


Domain annotation for each model (and alignments):
>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.3   4.8e-27   8.6e-23       1      69 [.       7      73 ..       7      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 4.8e-27
     DUF1992  1 laEerIreAierGeFdnlpgrGKPLplddendplvpeeerlanrilknagvlPpeielrkeieelkell 69
                laE++I++A+e+Ge+++lpg+G PL+l+d  d++vp+e+r+++r+lknag+lPpe+elr+e+ +  +ll
  EHT99525.1  7 LAEQHIKAAQEKGELSDLPGEGAPLNLED--DSQVPPELRAGYRLLKNAGFLPPELELRREALQVSDLL 73
                79*************************99..******************************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 982.78
//
Query:       EHT99526.1  [L=84]
Description: hypothetical protein CKS_1559 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   87.4   1.8    4.7e-25   86.8   1.8    1.3  1  ArfA      Alternative ribosome-rescue factor A
     0.0095   15.8   1.2        1.2    9.2   0.3    2.4  2  MORN      MORN repeat


Domain annotation for each model (and alignments):
>> ArfA  Alternative ribosome-rescue factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   1.8   5.3e-29   4.7e-25       2      43 ..       4      45 ..       3      46 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 5.3e-29
        ArfA  2 yehgrGkIkDNalkAlvtskLFrqrvekakKGKGSYqRkakh 43
                y+h++G+I+DNal+Al++++LFrqrve+++KGKGSY+Rk+kh
  EHT99526.1  4 YRHTKGQIQDNALQALLHDPLFRQRVEEKQKGKGSYRRKEKH 45
                99***************************************9 PP

>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.3   0.00013       1.2       3      16 ..      37      50 ..      36      53 .. 0.90
   2 !    5.1   0.0    0.0027        24      13      20 ..      55      62 ..      55      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00013
        MORN  3 GeWknGkrhGkGvy 16
                G +++  +hGkG++
  EHT99526.1 37 GSYRRKEKHGKGWE 50
                99**********96 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0027
        MORN 13 kGvytwpd 20
                +Gvy+wp+
  EHT99526.1 55 QGVYHWPS 62
                7*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 678.57
//
Query:       EHT99527.1  [L=136]
Description: mechanosensitive channel [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-46  156.3   1.3    4.3e-46  156.1   1.3    1.0  1  MscL      Large-conductance mechanosensitive channel, MscL
  ------ inclusion threshold ------
       0.02   15.1   0.3      0.035   14.3   0.0    1.6  2  UPF0239   Uncharacterised protein family (UPF0239)
        4.4    7.2   6.6          2    8.3   0.7    2.1  2  DUF3487   Protein of unknown function (DUF3487)


Domain annotation for each model (and alignments):
>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   1.3   7.3e-50   4.3e-46       1     121 []       3     130 ..       3     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 7.3e-50
        MscL   1 llkeFkefilrGnvidLAvgviiGaaftkiVtslvkdiimpliglllggvdfselkikl.....kaeaavlkygafiqavinFliiafviFlivkaink 94 
                 l+keF++f++rGnv+dLAvgviiGaaf+kiV+slv++iimp++gll+ggvdf++++++l     +++a+v++yg f+q+v++F+i+af+iF+ +k++nk
  EHT99527.1   3 LFKEFRDFAMRGNVVDLAVGVIIGAAFGKIVSSLVANIIMPPLGLLIGGVDFKSFSWVLkpavgNTPAVVMEYGIFLQTVFDFIIVAFAIFMAIKLMNK 101
                 689******************************************************999***9899******************************** PP

        MscL  95 ..kkkeeeeeeeaeekeeellteirdllk 121
                   kkke e+ ++++++ee llteirdllk
  EHT99527.1 102 lyKKKEVEKPAPKPTNEELLLTEIRDLLK 130
                 96655555555555577888*******97 PP

>> UPF0239  Uncharacterised protein family (UPF0239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.2   7.3e+03      24      43 ..      22      43 ..      19      44 .. 0.56
   2 ?   14.3   0.0   5.8e-06     0.035      19      52 ..      71     104 ..      66     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
     UPF0239 24 GLflGAifqlv..CilAiillp 43
                G  +GA f  +   + A i++p
  EHT99527.1 22 GVIIGAAFGKIvsSLVANIIMP 43
                6777888843312245556565 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.8e-06
     UPF0239  19 lllrYGLflGAifqlvCilAiillpsskseesve 52 
                 +++ YG+fl  +f ++ ++ +i+++ +  ++  +
  EHT99527.1  71 VVMEYGIFLQTVFDFIIVAFAIFMAIKLMNKLYK 104
                 6899******************999877766433 PP

>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.7   0.00034         2      24      71 ..       6      53 ..       3      59 .. 0.86
   2 ?    2.4   0.7     0.024   1.4e+02      34      62 ..      70      98 ..      56     110 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00034
     DUF3487 24 Ellvlaglglvvglvlglllallvgslaliptialllvllvvlvggkl 71
                E+  +a+ g vv l++g+++ +++g+++  + + ++++ l++l+gg  
  EHT99527.1  6 EFRDFAMRGNVVDLAVGVIIGAAFGKIVSSLVANIIMPPLGLLIGGVD 53
                66667888999999***********99999999999999999999875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.024
     DUF3487 34 vvglvlglllallvgslaliptialllvl 62
                +v +  g++l ++++ +++ ++i +++ l
  EHT99527.1 70 AVVMEYGIFLQTVFDFIIVAFAIFMAIKL 98
                55666788888888866666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1162.23
//
Query:       EHT99528.1  [L=458]
Description: NAD-binding component of Trk system potassium transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-59  198.4   2.7    8.8e-30  103.3   0.1    2.4  2  TrkA_N           TrkA-N domain
    4.2e-24   84.1   4.0    4.7e-11   42.3   0.0    3.8  4  TrkA_C           TrkA-C domain
    5.3e-12   46.1   1.6    0.00053   20.4   0.0    3.3  3  NAD_binding_7    Putative NAD(P)-binding
    9.7e-12   45.3   1.8    7.5e-05   23.2   0.1    3.7  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    5.7e-11   42.6   1.6    1.6e-05   25.0   0.2    2.6  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      7e-10   39.3   0.8    0.00097   19.4   0.1    2.5  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    2.8e-07   30.8   1.2      0.013   15.7   0.0    2.5  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    4.8e-07   29.5   0.2     0.0066   16.1   0.0    3.1  3  ApbA             Ketopantoate reductase PanE/ApbA
    1.2e-06   28.5   2.8     0.0037   17.2   0.1    2.5  2  NAD_binding_10   NAD(P)H-binding
    1.2e-06   27.9   4.2    0.00091   18.6   0.2    2.9  3  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      3e-06   27.3   1.8      0.026   14.4   0.1    2.5  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    1.2e-05   25.7   1.7        0.2   12.3   0.1    3.2  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.7e-05   24.2   0.1     0.0058   15.9   0.0    2.3  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    2.4e-05   24.4   0.4      0.049   13.6   0.0    3.2  3  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
    0.00013   22.7   0.3       0.19   12.6   0.1    2.5  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    0.00051   19.7   0.0     0.0017   18.0   0.0    1.9  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0017   18.0   0.1        1.9    8.0   0.0    2.3  2  DUF1188          Protein of unknown function (DUF1188)
     0.0045   16.4   0.5       0.22   10.8   0.1    2.5  2  ThiF             ThiF family
     0.0054   16.2   0.5       0.85    9.0   0.1    2.4  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0054   16.2   0.2       0.64    9.4   0.0    2.7  2  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.054   13.7   0.1         21    5.4   0.0    2.7  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.056   14.0   0.7        1.2    9.7   0.1    2.4  2  XdhC_C           XdhC Rossmann domain
       0.11   13.0   0.1       0.27   11.7   0.1    1.6  1  OAM_dimer        Dimerisation domain of d-ornithine 4,5-amino
       0.18   10.8   0.7        5.5    5.9   0.1    2.1  2  Lycopene_cycl    Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.1   1.2e-32   8.8e-30       1     112 [.       3     115 ..       3     125 .. 0.91
   2 !   95.1   0.5   4.3e-30   3.2e-27       1     116 []     235     350 ..     235     350 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 1.2e-32
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg.levvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqd 98 
                 iii+G+G+vG ++ae+L  +++d++v+d+d +r+++l++++ l+vv+g+++++ vL+eag+e+ad+++a+t++de+n++a+++a +l+++++ iar++ 
  EHT99528.1   3 IIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQDKFdLRVVQGHGSHPRVLREAGAEDADMLVAVTSSDETNMIACQIAYSLFNTPNRIARIRA 101
                 89*****************7779******************999******************************************************* PP

                 GGGHHHHHHHTTSE CS
      TrkA_N  99 pehaellkklgadv 112
                 +++ + + kl + +
  EHT99528.1 102 ADYLRDADKLFIPE 115
                 ***88777766433 PP

  == domain 2  score: 95.1 bits;  conditional E-value: 4.3e-30
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT..SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEES CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg..levvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraq 97 
                 i+++G G++G  la++L+++++ v +i+++++r++el+e+   + v++gda+d+e+L+e +ie++d++ia+t+ddeani+ ++lak++   kk+++ +q
  EHT99528.1 235 IMLVGGGNIGFGLAQKLEKNYS-VKLIERNPQRAAELAEQLhdTVVFYGDASDQELLAEEHIEQVDLFIAVTNDDEANIMSAMLAKKMGA-KKVMVLIQ 331
                 789****************995.***************9996555999**************************************8665.89****** PP

                 SGGGHHHHHHHTTSEEEEH CS
      TrkA_N  98 dpehaellkklgadvvisp 116
                 ++++++l++   +d +isp
  EHT99528.1 332 RRAYVDLVQGSVIDIAISP 350
                 *****************98 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.7     5e+03      50      69 ..      24      43 ..      22      44 .. 0.84
   2 !   42.3   0.0   6.3e-14   4.7e-11       3      69 ..     157     225 ..     155     226 .. 0.92
   3 ?   -0.5   0.0       1.5   1.1e+03      50      67 ..     275     292 ..     273     294 .. 0.85
   4 !   40.4   0.3   2.6e-13   1.9e-10       9      69 ..     391     451 ..     388     452 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.7
                T-EEEEEEEHHHHHHHHHHH CS
      TrkA_C 50 GDvllvvgspsdlaelrell 69
                +D+ +v ++++ l++l++++
  EHT99528.1 24 NDITVVDTDSARLRQLQDKF 43
                78889999999999999877 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 6.3e-14
                 EEEEE--GGGTTSBHHHHTHHHH....S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   3 evtvpagsplvGktlkelnlrar....gvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                  v+  +g plvG +l+   lr++    + +v+ai R++++i p g+t++e+GD++++++ +++++++ +++
  EHT99528.1 157 VVKAYYGGPLVGNPLSI--LRDHmphiDTRVAAIFRQDRPIRPQGSTIIEAGDEVFFIAASQHIRAVMSEM 225
                 57778899*********..88888888***************************************99876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.5
                 T-EEEEEEEHHHHHHHHH CS
      TrkA_C  50 GDvllvvgspsdlaelre 67 
                  D+++++g+ sd + l+e
  EHT99528.1 275 HDTVVFYGDASDQELLAE 292
                 69*********9888776 PP

  == domain 4  score: 40.4 bits;  conditional E-value: 2.6e-13
                 -GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHH.HHHHHHHH CS
      TrkA_C   9 gsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsd.laelrell 69 
                  s++vG+++++++l+  g l+ a++Rg++++i+++++++e GD+++ + +++  + ++++l+
  EHT99528.1 391 TSRVVGRSVDDIKLPP-GTLIGAVVRGDDVMIANDNLRIEQGDHVVMFLTDKKfVPDVERLF 451
                 699*************.******************************999987777777766 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.1e-07   0.00053       9      81 ..       2      85 ..       1      98 [. 0.73
   2 !   19.6   0.0   1.2e-06   0.00091       8      81 ..     233     317 ..     228     321 .. 0.73
   3 ?    3.9   0.1     0.098        73      17      83 ..     320     386 ..     318     401 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.1e-07
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev..keeleelvk........laeeel.ekdlegadlviaatddrelneriaea 81
                   k+++ G+G+v+ + +++l+ ++ ++tvv+ ++   ++l+++++         +++ l e+  e+ad+++a+t+ +e n   ++ 
     EHT99528.1  2 KIIILGAGQVGGTMAENLVGENNDITVVDTDSarLRQLQDKFDlrvvqghgSHPRVLrEAGAEDADMLVAVTSSDETNMIACQI 85
                   689****************************74433333444411111211233444467799***********9999766665 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.2e-06
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele...elvk.......laeeel..ekdlegadlviaatddrelneriaea 81 
                    k++++vGgG+++   ++kl ++   v+++  + ++++e   +l +       ++++el  e+++e++dl ia+t+d+e n   a +
     EHT99528.1 233 KRIMLVGGGNIGFGLAQKLEKN-YSVKLIERNPQRAAElaeQLHDtvvfygdASDQELlaEEHIEQVDLFIAVTNDDEANIMSAML 317
                    899***************9998.9*****9997444443332222333333334455556899***************99665555 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.098
  NAD_binding_7  17 evAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadlviaatddrelneriaeaak 83 
                    +++a+kv  l++  a+v +v   v +++ +  +++ + l +++ +ad+v +   +r + e+i + a+
     EHT99528.1 320 KMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLGHVRKADIVGVSSLRRGIAEAIEAIAH 386
                    689*****************99974444344455555666777788888777777777777777665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.5e-06    0.0018       1      52 [.       2      49 ..       2      68 .. 0.91
   2 ?   -1.4   0.0       4.9   3.6e+03      20      67 ..      60     113 ..      52     124 .. 0.58
   3 !   23.2   0.1     1e-07   7.5e-05       1      48 [.     234     284 ..     234     330 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-06
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvta 52
                   ki i+GaG++g ++a++l+ ++   ++i+v+ + +  ++++l++++  +v +
     EHT99528.1  2 KIIILGAGQVGGTMAENLVGEN---NDITVV-DTDSARLRQLQDKFDLRVVQ 49
                   68899*****************...****88.*************9977765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.9
                    HTTS.-GGCEEEEEESSCCCHHHHHHHHC.....-EEECECHHHHHHH-SEEEE CS
  F420_oxidored  20 aaga.qpheivvansrnpekaeelaeelg.....vkvtavdneeaaeeadvvvl 67 
                    +aga ++  +v ++s+++  + + + +++      ++    +++ +++ad +++
     EHT99528.1  60 EAGAeDADMLVAVTSSDETNMIACQIAYSlfntpNRIARIRAADYLRDADKLFI 113
                    566633334444445555555555555557777655555567777777777776 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1e-07
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC........- CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg........v 48 
                    +i ++G+Gn+g++la++l ++    +++ ++ +rnp++a+elae+l         +
     EHT99528.1 234 RIMLVGGGNIGFGLAQKLEKN----YSVKLI-ERNPQRAAELAEQLHdtvvfygdA 284
                    57889***********99888....8***88.*************98655544332 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.1e-05    0.0084      14      59 ..       2      46 ..       1      91 [. 0.73
   2 !   25.0   0.2   2.1e-08   1.6e-05      12     103 ..     232     325 ..     220     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge 59
                  k++++GaG+++  +a++L+ ++ + ++v+  + +r ++l ++++  
    EHT99528.1  2 KIIILGAGQVGGTMAENLVGENND-ITVVDTDSARLRQLQDKFDLR 46
                  899****************98877.*****************9543 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 2.1e-08
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCG....HHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealklee....lkellaeadvvisataseepilekeeveealkkrk 103
                    k+++l+G G+++  +a++L  k++  v  + R+ +ra+elae+l+++ + + + ++     +e+++++d+ i+ t+  e+ + ++++ + + ++k
    EHT99528.1 232 YKRIMLVGGGNIGFGLAQKLE-KNYS-VKLIERNPQRAAELAEQLHDTVVFYGDASDqellAEEHIEQVDLFIAVTNDDEANIMSAMLAKKMGAKK 325
                   489*****************7.5565.889***************99988887777634434799**************99999999988776543 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.3e-06   0.00097       1      44 [.       3      43 ..       3      84 .. 0.79
   2 !   18.1   0.1   3.2e-06    0.0024       1      87 [.     235     314 ..     235     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.3e-06
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44
                     ++i+GaG vG  +ae l+ +++    itv+d + ++l++l +k 
       EHT99528.1  3 IIILGAGQVGGTMAENLVGENND---ITVVDTDSARLRQLQDKF 43
                     89*****************9985...***********9998654 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.2e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlk 87 
                      ++++G+G++G ++a++l+++ +    + +++r+ +++++la+++   +      da+++e + ++++++ dl++ ++ +   ++++ 
       EHT99528.1 235 IMLVGGGNIGFGLAQKLEKNYS----VKLIERNPQRAAELAEQL--HDTVVFYGDASDQELLAEEHIEQVDLFIAVT-NDDEANIMS 314
                      789****************975....58********99999865..55677888999999988999******99654.334455555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-05     0.013       2      75 ..       3      84 ..       2      96 .. 0.77
   2 !   13.6   0.2   7.7e-05     0.057       2      87 ..     235     328 ..     234     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-05
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHC....SEEEE-SSSHHHHHHHHHS CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....akaaesieelvasl....dvvitmvkagkavdevieg 75
                   i ++G G+ G  ma+nl+ ++ +++v++ +++++++l ++     ++++ s   +++++      +++ v+++++++ +  +
     EHT99528.1  3 IIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQDKFdlrvVQGHGSHPRVLREAgaedADMLVAVTSSDETNMIACQ 84
                   6789********************************9998666667777777777777666654455566666666665555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.7e-05
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHC....SEEEE-SSSHHHHHHHHHSHCCC--TT-EEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasl....dvvitmvkagkavdeviegllealkkgdili 87 
                    i ++G G++G  +a++l+ ++y+v +++r+++++ el+++      + + +s +el+a+        ++ v+++++ + +   l++++ + ++++
     EHT99528.1 235 IMLVGGGNIGFGLAQKLE-KNYSVKLIERNPQRAAELAEQLhdtvvFYGDASDQELLAEEhieqVDLFIAVTNDDEANIMSAMLAKKMGAKKVMV 328
                    7799***********986.67*****************997688774444444444444445433357788888888888888999998888877 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.8e-06    0.0066       1      47 [.       3      51 ..       3      82 .. 0.81
   2 ?   -0.8   0.0       1.4   1.1e+03      19      44 ..     204     229 ..     199     233 .. 0.83
   3 !    9.7   0.1   0.00084      0.63       1      39 [.     235     273 ..     235     332 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.8e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH.HHHHCEEEEETT CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlea.lkknGlrltseg 47
                i ilGaG +G+++a +L   ++d+t+++ +  rl +   k +lr+ + +
  EHT99528.1  3 IIILGAGQVGGTMAENLVGENNDITVVDTDSaRLRQlQDKFDLRVVQGH 51
                89***************99************9***96667788888777 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
                 HHTHCEEEE-SCHHHHHHHHHCEEEE CS
        ApbA  19 kagadvtlilrsrrlealkknGlrlt 44 
                 +ag +v +i+ s+++ a+ ++  rl+
  EHT99528.1 204 EAGDEVFFIAASQHIRAVMSEMQRLE 229
                 7999***********99988877776 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00084
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkkn 39 
                 i  +G G iG  la kL ++++ v li r++ r+++l ++
  EHT99528.1 235 IMLVGGGNIGFGLAQKL-EKNYSVKLIERNPqRAAELAEQ 273
                 6789*************.669**********887775443 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   0.00039      0.29       3      73 ..       8      78 ..       7     106 .. 0.84
   2 !   17.2   0.1     5e-06    0.0037       4      92 ..     241     325 ..     239     336 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
                    TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHH.TT-SEEEES---TCC CS
  NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaeal.kgadaVvsalggggk 73
                     G+vG   ++ l+ + + ++t++  ++++l +l+++  l+vv+g  + +  l+ea  ++ad  v+ ++++++
      EHT99528.1  8 AGQVGGTMAENLVGE-NNDITVVDTDSARLRQLQDKFDLRVVQGHGSHPRVLREAGaEDADMLVAVTSSDET 78
                    7**************.58***********************************9972588888877776665 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5e-06
                     SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-CCHHHH.HHTT-SEEEES---TCCHHHHHHHHHHHH..HHCT--E CS
  NAD_binding_10   4 GkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtdvedlae.alkgadaVvsalggggkdeegaknivdaa..keagvkR 92 
                     G++G  l+++l ++  ++v+++ Rnp+++ael+++   + v+ gd++d+e lae +++++d  ++ ++ ++      +ni+ a+  k+ g k+
      EHT99528.1 241 GNIGFGLAQKLEKN--YSVKLIERNPQRAAELAEQlHDTVVFYGDASDQELLAEeHIEQVDLFIAVTNDDE------ANIMSAMlaKKMGAKK 325
                     88888888888665..9***************98845666778*******987615666676555555333......2333333113334444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   1.2e-06   0.00091      30      96 ..       2      70 ..       1      79 [. 0.89
   2 !    9.3   0.4   0.00085      0.64      30     119 ..     234     322 ..     213     357 .. 0.75
   3 ?    0.7   0.3      0.36   2.7e+02      44      94 ..     315     367 ..     309     372 .. 0.48

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHH.HHH-SEEE CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaea.vkeadvvi 96
                 k++++G+G +G   +++ +g + ++tv+D+++arl+ql++ +  ++v+ + s+ + l+ea +++ad+++
   EHT99528.1  2 KIIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQDkFDLRVVQGHGSHPRVLREAgAEDADMLV 70
                 899*************************************9**99999988888888776366777776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00085
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE..HCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS- CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvev..lksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMk 119
                  +++ +GgG  G   ++   + + +V++++ +p+r+ +l + l+ ++v     + qe l +e+++++d+ i    ++    ++++++   k+M 
   EHT99528.1 234 RIMLVGGGNIGFGLAQKL-EKNYSVKLIERNPQRAAELAEqLHDTVVFYgdASDQELLAEEHIEQVDLFIA---VTNDDEANIMSAMLAKKMG 322
                  789999999998765554.45789*************999788885555766777777899*******995...3444444444444444444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.36
                  HHHHHHTT-E.EEEEESSHHHHHHHHHTTTCECEE....HCHHHHHHHHHHHH-SE CS
  AlaDh_PNT_C  44 iatakglgak.VtvlDvrparleqleslgakfvev....lksqeellaeavkeadv 94 
                  +  ak++gak V+vl   ++r+ +++ ++++++++    ++++ ++l  +v++ad+
   EHT99528.1 315 AMLAKKMGAKkVMVL---IQRRAYVDLVQGSVIDIaispQQATISALLGHVRKADI 367
                  555666665413333...33333333333333333322255555555556666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.5e-05     0.026       1      44 [.       2      45 ..       2      85 .. 0.86
   2 !   12.1   0.2   0.00018      0.14       2      63 ..     235     298 ..     234     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekiek 44
                k+ ++GaG++G  +a+ ++ ++ ++++vd+++++l++ ++k   
  EHT99528.1  2 KIIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQDKFDL 45
                5789*******************************999988765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00018
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH...HHHCCTTTTSS-HHHHCCC CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiek...sleklvekgklkeeeveaa 63 
                 +  +G G +G g+a+ + +++++V+l++++++++++ +e++++    +  +  ++ l ee++e++
  EHT99528.1 235 IMLVGGGNIGFGLAQKL-EKNYSVKLIERNPQRAAELAEQLHDtvvFYGDASDQELLAEEHIEQV 298
                 5679**********985.789******************99994422333344444444444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00026       0.2       1      40 [.       2      41 ..       2      50 .. 0.87
   2 !   11.5   0.0   0.00046      0.35       1      35 [.     234     267 ..     234     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00026
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDe 40
                k++++G+G +g  +A++l   ++++tvv+  +  lr+l +
  EHT99528.1  2 KIIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQD 41
                799*************************998887755544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00046
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 +++ vGgG+ig  lA+ l + + +V+++er+++  
  EHT99528.1 234 RIMLVGGGNIGFGLAQKLEK-NYSVKLIERNPQRA 267
                 6889**************76.458******99865 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0078       5.8       2      32 ..       2      32 ..       1      82 [. 0.81
   2 !   15.9   0.0   7.7e-06    0.0058     138     187 ..     223     276 ..     194     281 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0078
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvele 32
                 +++++G+G  G ++a++l   + ++t+v+ +
   EHT99528.1  2 KIIILGAGQVGGTMAENLVGENNDITVVDTD 32
                 7899999999999999999999999999533 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 7.7e-06
                  CSS-T.....SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHH CS
                  xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 138 lkllp.....krivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsa 187
                  +++++     kri+ vGgG+iG  lA+ l k  + v l+e++++   +l ++l +
   EHT99528.1 223 SEMQRlekpyKRIMLVGGGNIGFGLAQKLEKN-YSVKLIERNPQRAAELAEQLHD 276
                  333335555899****************9887.99*******9988666666655 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1     0.006       4.5       1      82 [.       2      78 ..       2      99 .. 0.72
   2 ?   -0.9   0.0       1.9   1.4e+03      68      96 ..     204     232 ..     199     236 .. 0.79
   3 !   13.6   0.0   6.6e-05     0.049       2      66 ..     235     298 ..     234     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.006
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqal 82
                    ki +lGaG+ G ++A  l  +++++++   +++ +++++++  + + ++g+  +  +  +    + +++ad++v v +s  +
      EHT99528.1  2 KIIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQDKF-DLRVVQGHGSHPRVLRE----AGAEDADMLVAVTSSDET 78
                    799************99999999****999999999998754.44555555555554433....344555666666655555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.9
                     TT--EEEE---HHHHHHHHHHHCCC--TT CS
  NAD_Gly3P_dh_N  68 kgadiivlvvPsqalrevlkklkgllkkk 96 
                     +  d +++   sq++r v+ +++ l k+ 
      EHT99528.1 204 EAGDEVFFIAASQHIRAVMSEMQRLEKPY 232
                     55677889999**********99877665 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 6.6e-05
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHH CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaea 66 
                     i ++G+G+ G  lA+ l++n  +v+l+ r+++ + e+ e+ +++  + g + +++l a+++++++
      EHT99528.1 235 IMLVGGGNIGFGLAQKLEKNY-SVKLIERNPQRAAELAEQLHDTVVFYGDASDQELLAEEHIEQV 298
                     7889*************9998.9****************99999999999999999998887764 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0074       5.5       1      76 [.       1      79 [.       1      88 [. 0.75
   2 !   12.6   0.1   0.00025      0.19       2      87 ..     234     321 ..     233     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0074
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESS...HHHHHTCT...TESEEEE-S-GGGHH CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysd...leelladp...eidavivatpngthe 76
                  +++ i GaG++g   +++l  ++++     ++d+d++r +++ ++f++ +++    + ++l++    ++d+++ +t +++ +
    EHT99528.1  1 MKIIILGAGQVGGTMAENLVGENNDIT---VVDTDSARLRQLQDKFDLRVVQGhgsHPRVLREAgaeDADMLVAVTSSDETN 79
                  5899*******9999888888855544...67*****************888877744555544444788888888776555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00025
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE..EESS..HHHHHTCTTESEE..EE-S-GGGHHHHHHHHHHTT- CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve..aysd..leelladpeidav..ivatpngtheelakaaleagk 87 
                   r+ ++G+G+ig   +++l ++      v l++++++ra ++ae+++    +y d   +ella+++i+ v  ++a+ n+  ++++ a+l++++
    EHT99528.1 234 RIMLVGGGNIGFGLAQKLEKN----YSVKLIERNPQRAAELAEQLHDTvvFYGDasDQELLAEEHIEQVdlFIAVTNDDEANIMSAMLAKKM 321
                   78999*****98888666666....8899************999987776787766789999997777644899999999999999999877 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.3e-06    0.0017       1      41 [.       1      41 [.       1     103 [. 0.92
   2 ?   -2.0   0.0         3   2.3e+03       2      39 ..     234     270 ..     233     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.3e-06
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklns 41
                    mki ++G+G vG+++a  l    +++++vD d+++ ++l+ 
      EHT99528.1  1 MKIIILGAGQVGGTMAENLVGENNDITVVDTDSARLRQLQD 41
                    89***********************************9986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdkl 39 
                     +i  +G G +G   a  l +    v ++  + ++ ++l
      EHT99528.1 234 RIMLVGGGNIGFGLAQKLEK-NYSVKLIERNPQRAAEL 270
                     79999999999988887744.45666666666665555 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0026       1.9      45      78 ..       2      36 ..       1      73 [. 0.82
   2 !    8.0   0.0    0.0025       1.9      28      81 ..     217     270 ..     205     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
                EEEEES-CCCHHHHHHHHCCC.EEEEEEESSGGGG CS
     DUF1188 45 nvlviGaYltGaaiakkLskk.eevtlvDiephlk 78
                +++++Ga  +G ++a++L  + +++t+vD +++  
  EHT99528.1  2 KIIILGAGQVGGTMAENLVGEnNDITVVDTDSARL 36
                79*****************9999******987533 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0025
                 HHHHHHHHHTT--E..EEEEEES-CCCHHHHHHHHCCCEEEEEEESSGGGGGGS CS
     DUF1188  28 KaeavleyleeeeleeknvlviGaYltGaaiakkLskkeevtlvDiephlkell 81 
                   +av++ ++  e   k+++++G    G ++a+kL+k+  v l++ +p+ +  l
  EHT99528.1 217 HIRAVMSEMQRLEKPYKRIMLVGGGNIGFGLAQKLEKNYSVKLIERNPQRAAEL 270
                 445555556666666799****************************99855444 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1    0.0003      0.22      20      59 ..       2      40 ..       1      46 [. 0.86
   2 ?    3.1   0.0     0.066        50      11      37 ..     223     251 ..     213     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
                EEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvgkltlvDnDkielsNln 59
                k+ ++GaG +G  +++nL++     +t+vD D   l  l+
  EHT99528.1  2 KIIILGAGQVGGTMAENLVG-ENNDITVVDTDSARLRQLQ 40
                89****************86.4579*******98777665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.066
                 HHHHHHHT..SEEEEE--SHHHHHHHHHH CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrd..skvllvGaGglGsellknL 37 
                   +++L++  ++++lvG G +G  l++ L
  EHT99528.1 223 SEMQRLEKpyKRIMLVGGGNIGFGLAQKL 251
                 56889999999***********9999887 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0011      0.85       1      69 [.       3      70 ..       3      91 .. 0.76
   2 ?    5.2   0.0     0.017        12       4      72 ..     238     302 ..     235     342 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEEE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkeeqpdavi 69
                i+++Ga G++G  ++++l  ++ +++++d +s +    +l+d+   ++v++   ++  l+++ +e ++d+ +
  EHT99528.1  3 IIILGA-GQVGGTMAENLVGENNDITVVDTDSARL--RQLQDKfdlRVVQGHGSHPRVLREAGAE-DADMLV 70
                567776.**********************993332..2233334679999999999999998886.666555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.017
                 ETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE-- CS
   Epimerase   4 tGatGfiGsalvkallekg.yevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlA 72 
                 +G+ G iG  l+++l+++  +++i ++ ++ a+  ++l+d+ + ++d  d++ l++     +++ v ++ 
  EHT99528.1 238 VGG-GNIGFGLAQKLEKNYsVKLIERNPQRAAELAEQLHDTVVFYGDASDQELLAEE----HIEQVDLFI 302
                 565.99**********9886778888888888888888888999*****98866654....444444443 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.039        29       3      43 ..       3      42 ..       1      53 [. 0.88
   2 !    9.4   0.0   0.00085      0.64       3      62 ..     236     288 ..     233     305 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.039
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevake 43
                +++ Ga++ +G  +a++l+ e+ +++vvd  +++l+++ ++
  EHT99528.1  3 IIILGAGQ-VGGTMAENLVGENNDITVVDTDSARLRQLQDK 42
                78888886.899***********************998776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00085
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdre 62 
                 +lv G+   IG  +a++l +++++v +++r++++++e+a++l++     +++ +D +d+e
  EHT99528.1 236 MLVGGGN--IGFGLAQKL-EKNYSVKLIERNPQRAAELAEQLHD----TVVFYGDASDQE 288
                 4444444..888889988.556********************98....566677777655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.03        22       1      28 [.       5      32 ..       5      35 .. 0.94
   2 ?    5.4   0.0     0.028        21       2      30 ..     238     265 ..     237     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.03
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   I+GaG  G ++A  L  ++ d++++++ 
     EHT99528.1  5 ILGAGQVGGTMAENLVGENNDITVVDTD 32
                   89***********************986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.028
                    E--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   2 vGaGlsGlvaAylLakagfdvlllekrdr 30 
                    vG+G  G  +A+ L k+ ++v l+e++++
     EHT99528.1 238 VGGGNIGFGLAQKLEKN-YSVKLIERNPQ 265
                    9**************95.*******9875 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0016       1.2       2     101 ..       4      99 ..       3     102 .. 0.68
   2 ?    2.7   0.1      0.23   1.7e+02       2      57 ..     236     311 ..     235     412 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S-HHHHHHHHHHHSSS--SEEEESS-HHHHHHHCTTS.--........T CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeadetavvvlthdhklDaealeaalrkkaayigllGSrkkaarrlerlraagl.seeela 99 
                 +i+Gag+v+  +a+ +   + ++tvvd++++  + ++++   +++ + + ++h    ++l++a +++a ++ ++ S   ++ +  +++ + + +++++a
  EHT99528.1   4 IILGAGQVGGTMAENLVGENNDITVVDTDSA--RLRQLQ---DKFDLRVVQGHGSHPRVLREAGAEDADMLVAVTSSDETNMIACQIAYSLFnTPNRIA 97 
                 89**************************996..334444...556666666666666777777666666666666666666665555444332455555 PP

                 TE CS
      XdhC_C 100 rl 101
                 r+
  EHT99528.1  98 RI 99 
                 55 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.23
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.......-GGG-TT-SE......................-EEEE--S-HHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa.......tkerfpeade......................tavvvlthdhklD 57 
                 +++G+g+++  la+ +++ +++v +++ +++ a       +        +                      + ++++t+d +  
  EHT99528.1 236 MLVGGGNIGFGLAQKLEK-NYSVKLIERNPQRAaelaeqlH--------DtvvfygdasdqellaeehieqvDLFIAVTNDDEAN 311
                 578888888888887765.6888888888864323222220........123333333333444444445455555555554433 PP

>> OAM_dimer  Dimerisation domain of d-ornithine 4,5-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00036      0.27      15      49 ..     297     331 ..     292     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
                 EEEEEESS-SCHHHHHHHHHHHHCTTSEEEEEEEE CS
   OAM_dimer  15 qlsftLPvpaeeeAeeAAlelakkmGledpeVvhk 49 
                 q+++++ v++++eA+   + lakkmG + ++V  +
  EHT99528.1 297 QVDLFIAVTNDDEANIMSAMLAKKMGAKKVMVLIQ 331
                 899****************************9876 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.043        32       2      29 ..       3      30 ..       2      37 .. 0.89
   2 ?    5.9   0.1    0.0074       5.5       2     117 ..     235     351 ..     234     386 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.043
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvl 29
                   +++ GaG  g  +A++l+ ++ ++ vv 
     EHT99528.1  3 IIILGAGQVGGTMAENLVGENNDITVVD 30
                   79***************99999999985 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0074
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl...lfpnny.vWsdefedlga...leecvehsWsgtivylddgkkillgraYgrvsskrlk 90 
                    ++++G+G  g  lA++l   +++ +v lie  p+    l  + + + ++++ + ++    ee +e++     v  dd+++i++ +  +++  k+  
     EHT99528.1 235 IMLVGGGNIGFGLAQKL---EKNYSVKLIERNPQRaaeLAEQLHdTVVFYGDASDQellAEEHIEQVDLFIAVTNDDEANIMSAMLAKKMGAKKVM 327
                    679**************...8889999999887651113334456777777777766655667777777777777788888777777777777777 PP

  Lycopene_cycl  91 eellerlvengvklleakvesveeeea 117
                      +++r +   v l+++ v  ++ +++
     EHT99528.1 328 VLIQRRAY---VDLVQGSVIDIAISPQ 351
                    77777777...7777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3133.49
//
Query:       EHT99529.1  [L=432]
Description: 16S rRNA m5C967 methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-74  249.4   0.0    3.7e-74  248.7   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    1.2e-22   80.6   0.0    3.3e-22   79.2   0.0    1.8  1  NusB             NusB family
    1.3e-08   34.7   0.0    3.5e-08   33.4   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
    8.7e-06   25.9   0.0    1.5e-05   25.2   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
    1.5e-05   25.6   0.0    3.6e-05   24.4   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    0.00011   21.8   0.0    0.00025   20.6   0.0    1.5  1  MTS              Methyltransferase small domain
    0.00032   20.3   0.0    0.00058   19.5   0.0    1.3  1  Methyltransf_5   MraW methylase family
      0.007   16.7   0.0      0.024   14.9   0.0    1.6  2  DUF2431          Domain of unknown function (DUF2431)
     0.0093   15.6   0.0      0.016   14.8   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
  ------ inclusion threshold ------
      0.091   13.3   0.0       0.23   12.0   0.0    1.7  1  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
        0.1   12.3   0.0       0.17   11.6   0.0    1.3  1  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.7   0.0   2.3e-77   3.7e-74       2     199 ..     240     426 ..     239     427 .. 0.95

  Alignments for each domain:
  == domain 1  score: 248.7 bits;  conditional E-value: 2.3e-77
                      HHH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGGT CS
  Methyltr_RsmB-F   2 llLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgvi 95 
                      llL+p+++e+ilDlcaaPGgKTthi+e+ ++ ++v+Avd++++Rlkrv+enl+rLg+t + v ++D+r +++++ +++fDriLlDaPCs+tgvi
       EHT99529.1 240 LLLEPKNGEHILDLCAAPGGKTTHILEI-APDAQVLAVDVDAQRLKRVTENLTRLGMT-AEVKQGDGRTPQQWCDQRQFDRILLDAPCSATGVI 331
                      79**************************.999**************************.*********************************** PP

                      TT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEECTSEEE-TTTT CS
  Methyltr_RsmB-F  96 rrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeeagtlrllPhte 189
                      rr+pd+k++r+++di++la lq+++l+a+++llk+gG+++Y+TCsvl+eEn e+i  +L++++d++ v++  s+    ++g      +++P++e
       EHT99529.1 332 RRHPDIKWLRRDRDISELAALQRDILEATWPLLKAGGTMIYATCSVLPEENHEQISGFLQRHADAQAVSL--SG--APETG-----WQVFPDAE 416
                      ******************************************************************9999..22..22333.....577***** PP

                      SS-SEEEEEE CS
  Methyltr_RsmB-F 190 nkdgffiakl 199
                        dgff+akl
       EHT99529.1 417 GGDGFFYAKL 426
                      *********9 PP

>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0     2e-25   3.3e-22       2     134 .]       6     127 ..       5     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 2e-25
                 HHHHHHHHHHHHHHHH-S-HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS-SS CS
        NusB   2 kaRelalqalyqveinkedeeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellylddv 100
                 + R+l +q++ +v        +k+++l+ +l   ++++++ ++d a+++e+++gvlr l +l++li kl+ ++pl   +++++ ++++++y+lly+ +v
  EHT99529.1   6 NLRSLSAQLIERV-------VDKGESLNTVLP--AAQKKVADKDAALVQEICFGVLRTLPHLEALIGKLM-ERPLTGKQRTLHFLIMVGLYQLLYT-RV 93 
                 6899*********.......************..9*********************************99.*************************.** PP

                 HHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHHH CS
        NusB 101 PakvaineavelakkygdeksakFvNgVLrkvar 134
                 Pa++a+ e+v  a  +++ + ++++NgVLr+++r
  EHT99529.1  94 PAHAALAETVAGAEVLKRANLKGLINGVLRQFQR 127
                 ******************************9986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.9   4.7e+03      82     127 ..      97     141 ..      93     168 .. 0.59
   2 !   33.4   0.0   2.1e-11   3.5e-08       2     116 ..     245     379 ..     244     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
  Methyltransf_31  82 evlnaladpdkileeiervlkpggilliedprllaelpakveeesk 127
                      ++l+ + + +++l+++      +g+l   + r ++el+a+++e  +
       EHT99529.1  97 AALAETVAGAEVLKRANLKGLINGVLRQFQRR-QEELLASIQEGPQ 141
                      56666667777777777777777777766666.7777777777777 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 2.1e-11
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklled.ekfDlilsnevl.......... 84 
                      ++g ++lDl ++ G +t  +  e+ p+a+v  +D +++ +++ +en+ +lg + +e++qgd  + +++++d ++fD il ++++          
       EHT99529.1 245 KNGEHILDLCAAPGGKTTHIL-EIAPDAQVLAVDVDAQRLKRVTENLTRLGMT-AEVKQGDGRT-PQQWCDqRQFDRILLDAPCsatgvirrhp 335
                      57889****************.9*****************************8.*******999.5457776*********6666666667777 PP

  Methyltransf_31  85 ............naladpdkileeiervlkpggilliedprlla 116
                                   + a + +ile    +lk gg ++ +++++l 
       EHT99529.1 336 dikwlrrdrdisELAALQRDILEATWPLLKAGGTMIYATCSVLP 379
                      777777777777999999**********************9433 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     9e-09   1.5e-05      20     138 ..     245     380 ..     233     399 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 9e-09
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..HHH.TTEEEE..CS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CH.HHHHHHHH.. CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl.pgvtti..qgditdpetiekikealserkvdlvvsDgapdvsgv.hdldeylq.. 110
                 k+g++++Dl+aaPGg +  +l+    +++v+avD+     + + +++t +  ++ +++    ++ ++++++r++d ++ D   + +gv +  + + +  
  EHT99529.1 245 KNGEHILDLCAAPGGKTTHILEIAP-DAQVLAVDVDAQrlKRVtENLTRLgmTAEVKQG-DGRTPQQWCDQRQFDRILLDAPCSATGViRRHPDI-Kwl 340
                 48899******************75.5********776334445666666553333222.22345566677899******877666642222222.224 PP

                 .........CCCCHHHHCCHCCCCECCCEEEECCCH...C CS
        FtsJ 111 .........sqLllaalelalkllkpggtfvlkifr...g 138
                          + L +  le +  llk ggt++  ++    +
  EHT99529.1 341 rrdrdiselAALQRDILEATWPLLKAGGTMIYATCSvlpE 380
                 4566665556899999999999*******99777765553 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.2e-08   3.6e-05       1      70 [.     250     321 ..     250     334 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.2e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS..SSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp..fedgsfDlvvs 70 
                      +Ldl++ +G  t ++++  ++a+v++vD++++ l+++ e++ + g+ +e+ qgd ++ +   ++++fD +++
       EHT99529.1 250 ILDLCAAPGGKTTHILEIAPDAQVLAVDVDAQRLKRVTENLTRLGMTAEVKQGDGRTPQqwCDQRQFDRILL 321
                      8***************99889**********************************9866335888***9986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07   0.00025      27     107 ..     242     325 ..     229     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST...TS-EEEEEE---S CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve...ekkfdlivsNPPf 107
                 l+ +  +++lDl++  G  ++++++  p+a+v +vdvda+ l+  +enl++ ++ +ev + d+    +   +++fd i+   P 
  EHT99529.1 242 LEPKNGEHILDLCAAPGGKTTHILEIAPDAQVLAVDVDAQRLKRVTENLTRLGMTAEVKQGDGRTPQQwcdQRQFDRILLDAPC 325
                 55557789******************************************************9876654458899999987775 PP

>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.5e-07   0.00058      10     100 ..     236     323 ..     230     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.5e-07
                     HHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTTTT-EEEEEEE- CS
  Methyltransf_5  10 qevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaeanvtkvdgillDL 100
                     q++  llepk++   +D     gg ++++Le  ++ +++++d D + l+r +e+L++     ++ +g  ++ ++ ++++   ++d illD 
      EHT99529.1 236 QRCALLLEPKNGEHILDLCAAPGGKTTHILEIAPDAQVLAVDVDAQRLKRVTENLTRLGMTAEVKQGDGRTPQQWCDQR---QFDRILLDA 323
                     678889****************************************************999888888888888888877...888888885 PP

>> DUF2431  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3     2e+03     111     145 ..     236     270 ..     234     273 .. 0.84
   2 !   14.9   0.0   1.5e-05     0.024      48     146 ..     267     394 ..     259     413 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
     DUF2431 111 ksakellsekpgeilvtlfegepytlwnikdlare 145
                 ++++ ll++k+ge ++ l+   + ++ +i ++a +
  EHT99529.1 236 QRCALLLEPKNGEHILDLCAAPGGKTTHILEIAPD 270
                 568889*************9999988888887765 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-05
     DUF2431  48 LeeegvkvlfgVDatkleks...................klqeklkkekfdriifnFPhvggkstdvnrqvranq.........eLlvsffksakells 118
                 +    + ++++VDa++l+++                   + q+   +++fdri+   P+  ++    + +++  +          L ++++++ ++ll+
  EHT99529.1 267 IAPDAQVLAVDVDAQRLKRVtenltrlgmtaevkqgdgrTPQQWCDQRQFDRILLDAPCSATGVIRRHPDIKWLRrdrdiselaALQRDILEATWPLLK 365
                 4444666778********99*************9998754477889999***********777766666444444444555555*************** PP

     DUF2431 119 ekpgeilvtlfegep.ytlwnik.dlarea 146
                  + g+++   ++  p  ++ +i   l r+a
  EHT99529.1 366 AG-GTMIYATCSVLPeENHEQISgFLQRHA 394
                 **.887777776655245556654455555 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     1e-05     0.016      42     128 ..     247     330 ..     239     349 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                    C-EEEETT-TTSH...HHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH CS
  Cons_hypoth95  42 garvLDlfaGsGa...lglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakell 128
                    g+++LDl+a  G+     lE    + +++++v+ d++ +k + enl +l+++   ae+k+ + +  ++ +  +++fd + lD P  +  +
     EHT99529.1 247 GEHILDLCAAPGGkttHILEI-APD-AQVLAVDVDAQRLKRVTENLTRLGMT---AEVKQGDGRTPQQWC-DQRQFDRILLDAPCSATGV 330
                    667777777444411033443.333.5899********************66...677777777776665.5589*******99877665 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.23       6      90 .]     150     236 ..     146     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                      HHHHHHHHGGGHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-TT-TTEEES---...TTSHHHHTTS-EE--TTTH CS
  Methyltr_RsmF_N   6 iekmkellgeeaeaflaaleeprkkglRvNtlKisveeleklse..efelepvpwceeGfyleeeerpgkhplheaGlyYiQEpSam 90 
                      +++++   +++++++++a ++ ++  lRvN    +++++ +l +  e e    + ++e+  l   +   + p + +G++ +Q+ Sa+
       EHT99529.1 150 LNRLQLAWPDRWQQIVDANNQRPPMWLRVNRQHHTRDSWLALLTasEREAMAAEDVPEALRLATPAPVHQLPGFDQGWVTVQDLSAQ 236
                      6788888999*********9999***************999888555555666677899*****9999*****************96 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.17      88     183 ..     234     330 ..     228     345 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
                 HHHHHHHHTT--TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---...TT-EEEEEE--TTTGGGG CS
      Met_10  88 eaErerlaklveegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir...eqladrvvmnlpksaieF 183
                 +a r  l    ++ge ++d+ A  G  +  i   + + +vla+d++ +  k ++en+++  +   v   ++Dgr+  +   + ++dr+++++p sa+  
  EHT99529.1 234 SAQRCALLLEPKNGEHILDLCAAPGGKTTHILEIAPDAQVLAVDVDAQRLKRVTENLTRLGMTAEV--KQGDGRTPQQwcdQRQFDRILLDAPCSATGV 330
                 5666667777899******************999**********************9887777776..6899998877777999********9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3240.51
//
Query:       EHT99530.1  [L=314]
Description: 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-53  181.4   0.0    2.2e-53  180.7   0.0    1.3  1  Formyl_trans_N  Formyl transferase
    3.3e-31  107.5   0.0    5.6e-31  106.7   0.0    1.4  1  Formyl_trans_C  Formyl transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   2.5e-57   2.2e-53       3     180 ..       7     183 ..       5     184 .. 0.96

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 2.5e-57
                     EEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S---H CS
  Formyl_trans_N   3 ivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekk...leprsqfeeelaeelkelkadlivlagymkllpk 94 
                     i++   gt+++++++ldal  ++++  vv v++++d++ag++ +  as+++ ++ +++   ++p+s+++ e+++ ++ l+ad++v+++y+++lpk
      EHT99530.1   7 IIFA--GTPDFAARHLDALLASEHK--VVGVFTQPDRPAGRGNKLTASPVKALALAHDipvFQPKSLRPAENQQLVADLQADVMVVVAYGLILPK 97 
                     5555..9*****************7..**************************9999999*********************************** PP

                     HHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  95 elvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalvea 180
                     ++++++rl+++n+H+SLLPr++Gaa+iqral+aGd+etGvti+++d +lDtG++l++ +++i+aedt+ +l++++a +++++l+++
      EHT99530.1  98 AVLEMPRLGCINVHGSLLPRWRGAAPIQRALWAGDQETGVTIMQMDVGLDTGDMLVKLACPITAEDTSASLYDKLASLGPEGLLTT 183
                     *******************************************************************************9999875 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   6.3e-35   5.6e-31       1      99 [.     207     303 ..     207     304 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 6.3e-35
                     ..-GGGGB--TTSBHHHHHHHHHHT-TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEEEEEEEEETTS--EEHHHH CS
  Formyl_trans_C   1 kikkedgridwnqsaeeihnlvrglspwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgallilelqlegkkamsaedf 95 
                     k++ke++r+dw+ +ae++++ +r+++pwP  ++++n+++vk+++a v+ + +++  pG+iv+ dk+g+ +a++dg+l++l+lq++gkk+msa+d+
      EHT99530.1 207 KLSKEEARLDWQLPAEQLERCIRAFNPWPVSFFMVNDQPVKVWQAGVLPHVNKR--PGEIVKADKQGIHIATADGVLNLLQLQPAGKKPMSAQDL 299
                     89**********************************************987765..9************************************** PP

                     HHH. CS
  Formyl_trans_C  96 lngl 99 
                     ln+ 
      EHT99530.1 300 LNSR 303
                     *986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2341.21
//
Query:       EHT99531.1  [L=170]
Description: peptide deformylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-49  167.3   0.0    2.3e-49  167.1   0.0    1.0  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.0   1.3e-53   2.3e-49       2     158 ..       4     152 ..       3     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 1.3e-53
                      GG---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHCT-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECCEE CS
  Pep_deformylase   2 kkivkvgdpvLrekakpvekfeskelekllekmletmkeakgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitdeE 95 
                       +++ ++d++Lr+ a pv++++ + +++++++m+etm++ +g+gLAA+Q+++++r++vi+++++++e+       vliNP++ +ks e    eE
       EHT99531.1   4 LQVLHFPDERLRKIAAPVKEVNAE-VQRIVDDMFETMYSEEGIGLAATQVDIHQRIIVIDVSENRDER------LVLINPELLEKSGE-TGIEE 89 
                      57999**************98866.****************************************985......6*******666655.5679* PP

                      --TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TTXX CS
  Pep_deformylase  96 gClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridksek 158
                      gClS+p+++a V+R++r+kv++ld++gk++ele  +llA+++qHEiDhl+Gklfid ++++++
       EHT99531.1  90 GCLSIPEQRAFVPRAERVKVRALDREGKPFELETGDLLAICIQHEIDHLDGKLFIDYLSPLKR 152
                      ***********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1368.45
//
Query:       EHT99532.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-97  326.8   2.7    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.9e-12   45.6   8.5    1.9e-11   44.6   8.5    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.046   12.3   7.1      0.072   11.6   7.1    1.3  1  FUSC             Fusaric acid resistance protein family
      0.046   12.9   1.3       0.09   12.0   1.3    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.05   13.2   1.7      0.072   12.6   0.5    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
        0.1   12.3   1.6       0.81    9.4   0.3    2.2  2  LXG              LXG domain of WXG superfamily
       0.13   12.6   3.2       0.93    9.9   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   11.8   4.7       0.24   11.2   4.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.22   11.8   2.3        0.6   10.5   2.3    1.7  1  HalX             HalX domain
       0.23   10.7   4.0       0.39    9.9   4.0    1.3  1  ALIX_LYPXL_bnd   ALIX V-shaped domain binding to HIV
       0.26   11.7   2.9       0.56   10.6   2.9    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.29   10.9  10.4       0.48   10.2  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.36   11.2   4.1       0.92    9.9   2.6    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.48   10.6   7.6       0.22   11.7   4.5    1.8  2  CREPT            Cell-cycle alteration and expression-elevate
        1.2    8.6   6.9        2.9    7.4   6.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          2    8.7   6.7        0.3   11.4   1.2    2.3  2  ABC_tran_CTD     ABC transporter C-terminal domain
        7.6    7.2   8.3         15    6.3   1.9    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.069        59     168     229 ..      35     111 ..      21     122 .. 0.49
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.069
  DDE_Tnp_IS66 168 qaaaealarigklyaierearea..................eaeerlalrqeesrpllaeleawleeqlkkvlpksklgk 229
                   q++a   + i++l+a+ ++++++                  eaeer ++ qee +++l el++     l++ l++s ++k
    EHT99532.1  35 QRVAAYASAINRLKALVAKLQRMqfgksseklrektarqvrEAEERISALQEEMAEVLGELHD---PALPQPLRQSSARK 111
                   444444455555555555554222332222221111222223455555555555555555555...33455555555555 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99532.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99532.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99532.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99532.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99532.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   8.5   2.2e-14   1.9e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99532.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGElhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************9666555555556667778888888888889999*********************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.1   8.5e-05     0.072     213     294 ..       4      89 ..       1     124 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99532.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********877775556666666666666666666666554 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   0.00011      0.09      47     106 ..      34      90 ..      25      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99532.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   8.4e-05     0.072     144     223 ..      10      99 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k........e 223
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +        +
    EHT99532.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgelhdpA 99 
                   33444445555555556666667778999999999988886655439999999***********************88844444333330 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99532.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00095      0.81     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.3   0.1      0.14   1.2e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00095
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT99532.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99532.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                 56788888899999999999999999999988777 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0011      0.93      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    2.8   0.4      0.18   1.5e+02      33      53 ..      71      91 ..      68      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT99532.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99532.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.7   0.00028      0.24     114     195 ..      10      95 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveey 195
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e 
  EHT99532.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5788887777776655577777899999**********9862678999**********************************9986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99532.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3    0.0007       0.6       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y + + +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l el d
  EHT99532.1 37 VAAYASAINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGELHD 97
                789*****************************8752277888***************9876 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   0.00046      0.39      74     164 ..       9      96 ..       4     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00046
  ALIX_LYPXL_bnd  74 taelraelqkyreileeAsesDkivrqklqenkedlelLsgpeeeleaa.lpssssaaasesveeqirklrsllekldelkaereqllkdlk 164
                     +a lra lq+ ++++ + +e ++ ++q+++++ +++  L++  ++l++  + +ss++      e+ +r++r++ e++++l++e +++l +l+
      EHT99532.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqFGKSSEK----LREKTARQVREAEERISALQEEMAEVLGELH 96 
                     7899***********************************998888888855565543....3455555777777999999999888888886 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.9   0.00066      0.56      32     107 ..      21      95 ..       4      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskalleei 107
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l e+
  EHT99532.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5688999***********************9999877..66677888888999999************999887665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.4   0.00056      0.48      17      99 ..       5      89 ..       3      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
         ERM 17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeese 99
                + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ 
  EHT99532.1  5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMA 89
                66888999999****************************999999999999887335577789*******************986 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6    0.0011      0.92       9      65 ..      24      76 ..      21      94 .. 0.79
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT99532.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT99532.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99532.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99532.1 167 ACCSCDHI 174
                  35555554 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.5   0.00025      0.22      44     141 ..      10     115 ..       6     117 .. 0.78
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshiqsLPdLtelpd...vt 133
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  L d + lp+    +
  EHT99532.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLGELHDPA-LPQplrQS 107
                 56778999999********************99999999987615666776666655432111278888999999999999999998855.88877778 PP

       CREPT 134 gglapLPs 141
                 ++ +pLP 
  EHT99532.1 108 SARKPLPA 115
                 88899996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT99532.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.9    0.0034       2.9      71     152 ..      14      97 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL +l +
    EHT99532.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                   55666666666666666666667777888889999999999877644778888999***********************99987 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4       2.5   2.1e+03      36      55 ..      32      52 ..       7      59 .. 0.42
   2 ?   11.4   1.2   0.00035       0.3       1      37 [.      65     101 ..      65     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
  ABC_tran_CTD 36 lysdp.eklaelsaeleelea 55
                  l s+  ++ a + ++l++l a
    EHT99532.1 32 LLSQRvAAYASAINRLKALVA 52
                  222222333333333443333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpely 37 
                   kl  k  r+  e e++I aL+ee+ae+  el dp+l 
    EHT99532.1  65 KLREKTARQVREAEERISALQEEMAEVLGELHDPALP 101
                   788899999*************************974 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.9     0.017        15      22      53 ..      12      43 ..      10      67 .. 0.88
   2 ?    2.7   1.4      0.24     2e+02      34      55 ..      68      89 ..      42     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99532.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                667889********************887665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessg 55
                ++  rq+r+ +er+++l+e+++
  EHT99532.1 68 EKTARQVREAEERISALQEEMA 89
                4555666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1081  (0.0602934); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 3723.81
//
Query:       EHT99533.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99533.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 899.68
//
Query:       EHT99534.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99534.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99534.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99534.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99534.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 818.03
//
Query:       EHT99535.1  [L=210]
Description: DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-28   99.7   0.2    1.8e-28   98.9   0.2    1.4  1  Response_reg  Response regulator receiver domain
    6.5e-22   76.8   0.6      1e-21   76.2   0.6    1.3  1  GerE          Bacterial regulatory proteins, luxR family
    1.4e-06   27.7   1.2      4e-06   26.2   1.2    1.8  1  Sigma70_r4    Sigma-70, region 4
      2e-05   24.2   0.2    3.7e-05   23.3   0.2    1.5  1  Sigma70_r4_2  Sigma-70, region 4
    0.00022   21.0   0.7      0.002   17.9   0.7    2.2  1  HTH_10        HTH DNA binding domain
     0.0074   16.1   0.1      0.017   14.9   0.1    1.6  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.034   13.7   0.2      0.065   12.8   0.2    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
      0.059   12.8   0.1       0.17   11.3   0.1    1.8  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.064   13.3   0.1      0.064   13.3   0.1    2.6  3  HTH_20        Helix-turn-helix domain
      0.095   12.7   0.5        1.7    8.6   0.1    2.6  3  HTH_12        Ribonuclease R winged-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.2     1e-31   1.8e-28       1     110 [.       8     118 ..       8     120 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 1e-31
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   ++ivdD+pl+r+++rqll  +  +++vaea++g+eal+ +++ ++d+illD+nm gm+Gl++lk +r e  + ++++lt  ++ +d+ ++++agad+
    EHT99535.1   8 IMIVDDHPLMRRGIRQLLAlDPTLQVVAEASNGTEALAEARRLAPDVILLDLNMKGMSGLDTLKALRHEGIHSRILVLTVSDARSDIFAMVDAGADG 104
                   89*****************999*************************************************************************** PP

                   EEESSG-HHHHHHH CS
  Response_reg  97 flsKpfdpeeLlka 110
                   +l K+ +pe Ll+ 
    EHT99535.1 105 YLLKDSEPEILLNQ 118
                   ******99988876 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.6   5.6e-25     1e-21       3      55 ..     150     202 ..     148     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 5.6e-25
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 L++REr+vL+ +a G+snk +A+ l+iSe+TVkvh++ni++KL+v+srv+++ 
  EHT99535.1 150 LTERERDVLQEVARGLSNKAVADTLQISEETVKVHLRNILRKLEVRSRVAATI 202
                 9*************************************************987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.2   2.2e-09     4e-06       5      48 ..     150     192 ..     147     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.2e-09
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L+erer+vl+ +  +gl+ + ++++l+iS+e+V+ ++++ lrkL
  EHT99535.1 150 LTERERDVLQEV-ARGLSNKAVADTLQISEETVKVHLRNILRKL 192
                 9*********98.5999**************************9 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   2.1e-08   3.7e-05      11      54 .]     150     192 ..     147     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.1e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   L+er+r ++      gls k +A  l ise tVk +l+  ++kL
    EHT99535.1 150 LTERERDVLQE-VARGLSNKAVADTLQISEETVKVHLRNILRKL 192
                   899999*9999.78***************************998 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   1.1e-06     0.002      19      51 ..     160     192 ..     150     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
      HTH_10  19 dyPRrvtlkeLAkelGIskstlsehLrkaeskl 51 
                 ++ R  + k++A++l Is+ t++ hLr++ +kl
  EHT99535.1 160 EVARGLSNKAVADTLQISEETVKVHLRNILRKL 192
                 67899999***********************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.6e-06     0.017      10      35 ..     157     182 ..     150     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.6e-06
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvy 35 
                 +l+ +a+Gls +++A+ L +s+ Tv 
  EHT99535.1 157 VLQEVARGLSNKAVADTLQISEETVK 182
                 8999999******************7 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.6e-05     0.065       7      40 ..     156     187 ..     150     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
      HTH_24   7 kILelLqknprisqreLAerlglSpstvnrrlkr 40 
                 ++L+++ +  ++s++ +A+ l +S  tv+ +l++
  EHT99535.1 156 DVLQEVAR--GLSNKAVADTLQISEETVKVHLRN 187
                 55555555..8*********************96 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.7e-05      0.17      17      45 ..     154     182 ..     151     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.7e-05
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVw 45 
                   e+ +l+++ ++ s kavA+ l +S+ TV+
    EHT99535.1 154 ERDVLQEVARGLSNKAVADTLQISEETVK 182
                   67899**********************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.4       2.1   3.7e+03      31      31 ..      48      48 ..      17      78 .. 0.56
   2 ?   -0.6   0.0      0.79   1.4e+03       3      23 ..      82     100 ..      80     109 .. 0.76
   3 ?   13.3   0.1   3.6e-05     0.064      13      47 ..     155     187 ..     144     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
                H CS
      HTH_20 31 a 31
                 
  EHT99535.1 48 R 48
                1 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.79
                 HHHHHS-HHHHHHHHHHSTCT CS
      HTH_20   3 iaeALahPvRrrilraLarae 23 
                 i+ ++ +  R +i+++   ++
  EHT99535.1  82 ILVLTVSDARSDIFAMV--DA 100
                 56677889999***999..33 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 3.6e-05
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLrv 47 
                 r++l++   a+gl+ +++a++l++s  t+  HLr 
  EHT99535.1 155 RDVLQEV--ARGLSNKAVADTLQISEETVKVHLRN 187
                 89*****..************************64 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.3   9.5e+03       9      23 ..      11      25 ..       6      27 .. 0.59
   2 ?    1.4   0.0      0.18   3.1e+02      24      40 ..     121     138 ..     113     156 .. 0.75
   3 ?    8.6   0.1   0.00096       1.7       5      45 ..     156     195 ..     155     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.3
      HTH_12  9 esdkpigakeiaeeL 23
                  d+p+ ++ i + L
  EHT99535.1 11 VDDHPLMRRGIRQLL 25
                456666666666655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.18
      HTH_12  24 kkr.gydigeravRyrLr 40 
                 + + g+++  +avR  L 
  EHT99535.1 121 QATqGENVFSEAVRHSLA 138
                 556699********9885 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00096
      HTH_12   5 kilaesdkpigakeiaeeLkkrgydigeravRyrLrkleer 45 
                 ++l+e  + ++ k++a+ L+  ++ + +  +R  Lrkle r
  EHT99535.1 156 DVLQEVARGLSNKAVADTLQISEETV-KVHLRNILRKLEVR 195
                 5899999************9888888.67788888888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1613.84
//
Query:       EHT99536.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99536.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99536.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99536.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99536.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99536.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT99536.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99536.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99536.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT99536.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99536.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99536.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHT99536.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99536.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99536.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99536.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT99536.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99536.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2723.89
//
Query:       EHT99537.1  [L=169]
Description: putative DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.078   13.2   0.0       0.12   12.5   0.0    1.4  1  HTH_17    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.9e-06      0.12       5      50 ..      86     134 ..      82     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-06
      HTH_17   5 eEaAelLgvsrstvyrli..rrgelpaak..iGrrwriprsdleewlekr 50 
                  ++A+l gvsr+  ++l   +++++ ++    G+    + +d+ ewl +r
  EHT99537.1  86 TDVADLIGVSRQNMRKLMltHSKQF-PLPvhDGKTAIWHLADVLEWLGQR 134
                 69**************887788888.774436677999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1342.02
//
Query:       EHT99538.1  [L=59]
Description: hypothetical protein CKS_1546 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0083   15.9   0.0     0.0097   15.6   0.0    1.3  1  DUF2158   Uncharacterized small protein (DUF2158)


Domain annotation for each model (and alignments):
>> DUF2158  Uncharacterized small protein (DUF2158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.4e-07    0.0097       4      37 ..       6      33 ..       3      47 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.4e-07
     DUF2158  4 dVVkLKsGGpeMTVt.aaGgviaapgeslkCqWFd 37
                d V+ K+GGp+M V  a G       + l C+  d
  EHT99538.1  6 DLVQSKTGGPKMVVLrAEG-------DTLWCARVD 33
                89***********985555.......555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 552.11
//
Query:       EHT99539.1  [L=257]
Description: hypothetical protein CKS_1545 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-52  175.4   1.2    9.5e-52  175.0   1.2    1.1  1  DUF3750   Protein of unknown function (DUF3750)


Domain annotation for each model (and alignments):
>> DUF3750  Protein of unknown function (DUF3750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   1.2   5.3e-56   9.5e-52       2     128 .]      59     187 ..      58     187 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.0 bits;  conditional E-value: 5.3e-56
     DUF3750   2 avvevyaAkivswrgllavHtWivvkekgaesytryevvgw..keavrqkkelpdrsWfgnepelllelrgekaeeliekiekavesYpyakeYrafPG 98 
                 a+++vyaA ++ w+g++avH Wi++k++g+++ytryev++w  +++vr++++lpd++W+g++p+ll+e+rg +a++li++ie+a+++Yp+ ++Y+a+PG
  EHT99539.1  59 AIIQVYAAPTYGWKGAVAVHPWIIFKRAGETRYTRYEVISWgsGDKVRRNASLPDGYWYGAKPRLLVEHRGPEAQNLIPQIEAAIKTYPWPTTYHAWPG 157
                 89***************************************9999****************************************************** PP

     DUF3750  99 PNSNTfvawvlrqvpelklelpakaiGkdy 128
                 PNSNTf+a++ r+vp lkl+lpa+a+Gkdy
  EHT99539.1 158 PNSNTFMAHIGRNVPTLKLNLPANALGKDY 187
                 *****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2162.39
//
Query:       EHT99540.1  [L=104]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 921.10
//
Query:       EHT99541.1  [L=339]
Description: lipase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-69  232.6   0.1    5.9e-69  232.1   0.1    1.2  1  Abhydrolase_3    alpha/beta hydrolase fold
    9.7e-06   24.7   0.1    1.6e-05   23.9   0.1    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
    3.6e-05   23.3   0.1    8.8e-05   22.1   0.1    1.5  1  Peptidase_S9     Prolyl oligopeptidase family
      7e-05   21.9   1.1    0.00049   19.1   1.1    2.0  1  COesterase       Carboxylesterase family
    0.00026   20.0   0.0    0.00036   19.5   0.0    1.2  1  Say1_Mug180      Steryl acetyl hydrolase
     0.0036   16.3   0.6      0.012   14.6   0.6    1.7  1  Chlorophyllase   Chlorophyllase
  ------ inclusion threshold ------
      0.019   15.6   0.3      0.029   15.0   0.3    1.4  1  Abhydrolase_6    Alpha/beta hydrolase family
      0.091   11.4   0.1        1.4    7.5   0.1    2.0  2  AXE1             Acetyl xylan esterase (AXE1)
       0.11   11.8   0.0       0.97    8.6   0.0    2.1  2  Hydrolase_4      Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   0.1   2.9e-72   5.9e-69       2     209 ..     105     311 ..     104     313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 232.1 bits;  conditional E-value: 2.9e-72
                    EEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_3   2 vyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardege 97 
                    ++fHGGG+vlg++ th++l+r+l++e+ga++v v+Y  +Pe+++P a+ +a++a++w+ae+ +e+g+d +r++l+G+S GGn++aaval+a+++++
     EHT99541.1 105 MFFHGGGWVLGDFPTHERLVRDLVNESGAAAVFVNYTPSPEAHYPVAITQAYEATKWVAEHGAEIGVDGKRLALVGNSVGGNMVAAVALQAKQNKT 200
                    89***********************************************************99********************************* PP

                    --EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS.GGGGGSTTTSGGGC..S-SST---EEEEEETT-TTHHHHHHHHHHH CS
  Abhydrolase_3  98 pkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp.eadrddplasplla..edlsglpptlvvvaefDplrdegeayaerl 190
                    p+++  v+++Pvtd+ +++ +s+   +++a+g++ltr+++++fw+ y+  e+dr++ laspl+a  e+l+glpptl+++ae D+lrdegea+ ++l
     EHT99541.1 201 PAIRYDVMLWPVTDA-NFDDASY---KQFANGYFLTRNMMKWFWDNYTTsEKDRNSILASPLRAtkEELAGLPPTLIQTAELDVLRDEGEAFGRKL 292
                    ***************.*******...899*******************66**************6336**************************** PP

                    HHTT--EEEEEETTEETTG CS
  Abhydrolase_3 191 raagvevelieyegmvHgf 209
                     aagv+v++ +y+gm+H+f
     EHT99541.1 293 DAAGVPVTVTRYNGMIHDF 311
                    *****************99 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   8.1e-09   1.6e-05       2     128 ..      85     213 ..      84     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 8.1e-09
  Chlorophyllase2   2 pPkpllvvaPte.ageYpvllflhGyl.llnsl..YsqlLkh.iashgfivvapqlykvaeada.keiksaakvlnWlakgLesvlpeevepdl 89 
                       P++l +v P + ag  pv++f+hG   +l ++   ++l++  +   g  +v ++ +   ea+    i +a + ++W+a++ +     e+  d 
       EHT99541.1  85 KPLTLTIVKPAHaAGVLPVFMFFHGGGwVLGDFptHERLVRDlVNESGAAAVFVNYTPSPEAHYpVAITQAYEATKWVAEHGA-----EIGVDG 173
                      5899999**9752799********987666655225667765267788889999877766666679**************966.....789999 PP

  Chlorophyllase2  90 sklalsgHSrGgktafalalgkaktsl.kfsaligvdPva 128
                      ++lal+g S Gg++++a+al+ ++ ++  +   +++ Pv+
       EHT99541.1 174 KRLALVGNSVGGNMVAAVALQAKQNKTpAIRYDVMLWPVT 213
                      *********************9996665666666666766 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.4e-08   8.8e-05      49     187 ..     156     310 ..     149     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.4e-08
                   HHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHHH-GG....G-SEEEEESE---CCCHHCSTTS......THHHCCCC--TTT..CHHHHHH CS
  Peptidase_S9  49 iaaaealakeg...yvdserlaitGgSyGGyltgaalnqrpd....lFkaavaevpvvdvlrydsdtdl......lteeymewgnpee..neegyke 130
                    +a++++a++g    vd +rla+ G S GG +++a++ q+++      ++ v   pv+d   +d + +       lt+++m+w   ++  +e+  + 
    EHT99541.1 156 YEATKWVAEHGaeiGVDGKRLALVGNSVGGNMVAAVALQAKQnktpAIRYDVMLWPVTDANFDDASYKQfangyfLTRNMMKWFWDNYttSEK-DRN 251
                   5677777777654469*******************9986544222255666777789988887777665677787777888876544432333.335 PP

                   HHHH-CGGG--....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SS CS
  Peptidase_S9 131 lspyspldnvk....aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHg 187
                      +spl++ k      pp+L++++++D  v   e++ + ++L+ +g++v +  + +  H 
    EHT99541.1 252 SILASPLRATKeelaGLPPTLIQTAELD--VLRDEGEAFGRKLDAAGVPVTVTRYNGMIHD 310
                   56667777766778899**********9..7779***************999998888884 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.1   2.5e-07   0.00049      88     206 ..      87     195 ..      62     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.5e-07
                 -EEEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEE CS
  COesterase  88 LyLnvytPkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdp 184
                 L+L + +P++   a   lPV++++hGgg + g+  +     + L++e +   V +nY         t + ea+  v++     A +WV e+ a+ G d 
  EHT99541.1  87 LTLTIVKPAH---AAGVLPVFMFFHGGGWVLGDFPTheRLVRDLVNESGAAAVFVNY---------TPSPEAHYPVAITQAYEATKWVAEHGAEIGVDG 173
                 99******65...56778***************977335568899999********9.........788999999************************ PP

                 EEEEEEEETHHHHHHHHHHHSG CS
  COesterase 185 ervtlfGesAGaasvsllllsp 206
                 +r  l+G+s G+ +v++  l  
  EHT99541.1 174 KRLALVGNSVGGNMVAAVALQA 195
                 ***************9988875 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.8e-07   0.00036     120     238 ..      99     216 ..      88     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
  Say1_Mug180 120 kvDpvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvks...kgf..knvvvlGdSaGGnlvLsl 212
                  +v pv +++HGGg++l+  p+    + +l +     a + + Yt         +Yp  + ++    +++ +    +g+  k + ++G+S GGn+v  +
   EHT99541.1  99 GVLPVFMFFHGGGWVLGDFPTHERLVRDLVNESGAAA-VFVNYTPSP----EAHYPVAITQAYEATKWVAEHgaeIGVdgKRLALVGNSVGGNMVAAV 191
                  5669******************999999999866655.567898766....789*******999999998642223434499**************** PP

  Say1_Mug180 213 llklsklnkvvlPkkaiaiSPWlnlt 238
                   l+ ++ nk+   +  +++ P  ++ 
   EHT99541.1 192 ALQAKQ-NKTPAIRYDVMLWPVTDAN 216
                  **9887.7755555555555555555 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.6   6.2e-06     0.012      26     141 ..      80     195 ..      55     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-06
  Chlorophyllase  26 rsspapPkpliivtPae.aGtypvvlflhG..tllsnk.fysk.llnhiashGfivvaPqlykllp.Psaq..deidsaaevieWlseglkavlp 112
                      +    P +l iv Pa  aG+ pv +f+hG  ++l +  ++ + + + +   G   v   +++  p P+a   + i +a e  +W++e+      
      EHT99541.1  80 ITALGKPLTLTIVKPAHaAGVLPVFMFFHGggWVLGDFpTHERlVRDLVNESGAAAV---FVNYTPsPEAHypVAITQAYEATKWVAEH-----G 166
                     3344567778899998637**********7334554431233314567777886555...44555555554226789999999999876.....4 PP

  Chlorophyllase 113 tsveanlsklalvGhsrGGktafalalgy 141
                      ++  + ++lalvG s GG+   a+al+ 
      EHT99541.1 167 AEIGVDGKRLALVGNSVGGNMVAAVALQA 195
                     5778899*******************965 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.3   1.5e-05     0.029       4     152 ..     107     269 ..      96     332 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                    E--GC.....G.......C...HHHH.HHHHCCT.CEEEEE--TTSTS-GGCS--HHHC..HHH..HHHHCCTT......TTSEEEEEETCHHHHH CS
  Abhydrolase_6   4 lHGagssassW.......l...vapL.aallaag.vhvlapDlpGhGrsdpppldledl..adl..aalldelaa....gggpvvlvGHSlGGala 79 
                     HG+g     W       +   v+ L  + +aa  + +++p+   h         ++ +  +++     ++e +a    +g++  lvG+S GG ++
     EHT99541.1 107 FHGGG-----WvlgdfptHerlVRDLvNESGAAAvFVNYTPSPEAH---------YPVAitQAYeaTKWVAEHGAeigvDGKRLALVGNSVGGNMV 188
                    46666.....654443321112222222222222222222333222.........21111233332223333333577799999********9877 PP

                    HHHHHCC.......EE..EEES-..----TTTS----TTHHHHHHTT-C.CCCHCCH......S-HSCCCCHHHCCCCHCHCCCGHH CS
  Abhydrolase_6  80 laaapla.....lvvg..vlldppptalpagllaaalelllallallrl.lawlsre......plprlfladedadaawrarlarla 152
                    +a+a +a     + ++  v+l p   +++a + +a  ++++  + l r    w+  +      +++ ++la +   +a  + la+l+
     EHT99541.1 189 AAVALQAkqnktPAIRydVMLWP---VTDANFDDASYKQFANGYFLTRNmMKWFWDNyttsekDRN-SILASPL--RATKEELAGLP 269
                    77444447787733345588888...7888887777777776666555544666333334432222.6666444..44444444444 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.044        87      67      92 ..      85     110 ..      73     125 .. 0.83
   2 ?    7.5   0.1   0.00069       1.4     171     200 ..     171     199 ..     147     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.044
                 EEEEEEEEEES.SSSSEEEEEEEE-T CS
        AXE1  67 arikaklvlPkekeeklPavvefhGY 92 
                 ++++  +v+P+++++ lP+ + fhG 
  EHT99541.1  85 KPLTLTIVKPAHAAGVLPVFMFFHGG 110
                 5667789*****************94 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00069
                 EEEEEEEEEEETHHHHHHHHHHHH-SS-SE CS
        AXE1 171 vDeeRvavlGasqGGalalavaalekrika 200
                 vD +R+a +G+s GG +  av al+ + ++
  EHT99541.1 171 VDGKRLALVGNSVGGNMVAAV-ALQAKQNK 199
                 9**************996555.56655544 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00049      0.97      75     115 ..     173     213 ..     160     266 .. 0.69
   2 ?    0.9   0.0      0.11   2.3e+02     193     233 ..     270     310 ..     241     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00049
  Hydrolase_4  75 elplfllGhSmGGliallyllrypdkvaglilsaPalkika 115
                  +++l l+G S+GG ++++++l+ +++ + +i    +l++ +
   EHT99541.1 173 GKRLALVGNSVGGNMVAAVALQAKQNKTPAIRYDVMLWPVT 213
                  56899***************888876666665555555544 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
  Hydrolase_4 193 PllllhGeaDkvvdpeas.relyerlgskdktlklypglyHe 233
                  P+l+  +e D + d++++  + ++++g   +t++ y+g+ H+
   EHT99541.1 270 PTLIQTAELDVLRDEGEAfGRKLDAAGV-PVTVTRYNGMIHD 310
                  8999999999999977776455555555.899999****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.34
# Mc/sec: 2993.66
//
Query:       EHT99542.1  [L=526]
Description: GMP synthetase (glutamine aminotransferase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-44  148.2   0.0      1e-43  147.3   0.0    1.5  1  GMP_synt_C     GMP synthase C terminal domain
    7.2e-40  136.8   0.0      1e-39  136.3   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
      6e-09   35.4   0.1      1e-06   28.1   0.1    2.3  2  NAD_synthase   NAD synthase
    1.4e-08   34.7   0.0    3.3e-08   33.5   0.0    1.6  1  Peptidase_C26  Peptidase C26
    2.1e-05   23.5   0.1    0.00011   21.1   0.1    2.0  2  tRNA_Me_trans  tRNA methyl transferase
     0.0015   18.3   0.0      0.009   15.7   0.0    1.9  2  Asn_synthase   Asparagine synthase
     0.0093   15.5   0.0        2.7    7.4   0.0    2.5  3  QueC           Queuosine biosynthesis protein QueC
  ------ inclusion threshold ------
      0.015   14.9   0.1      0.027   14.0   0.1    1.4  1  ThiI           Thiamine biosynthesis protein (ThiI)
      0.076   13.0   0.0       0.15   12.1   0.0    1.4  1  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami
       0.16   11.7   0.0       0.31   10.8   0.0    1.6  1  ATP_bind_3     PP-loop family


Domain annotation for each model (and alignments):
>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   5.8e-47     1e-43       1      92 []     434     525 ..     434     525 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 5.8e-47
                 CCCCTTT-GGGSSEEEEEEEEEEE----------EEEEEEEEE---------B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C   1 eelkkaglykkiwQafavllpvksvGvmgdkRtyeyvvalRaveseDamtadvaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                 eel+ka+ly+k++Qaf+v+lpv+svGvmgd R+y++vv lRave+ D+mta++a+lpy++L ++s+ri+nev+g++rvvydi+ kPpatiEw
  EHT99542.1 434 EELHKADLYNKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW 525
                 799***************************************************************************************** PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   0.0   5.8e-43     1e-39       2     189 ..      13     201 ..      12     202 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 5.8e-43
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 ++D+++++t+ ++++++elgv++e++ +d +  +i+  + np gi++sgGp s + + +++a  +++++++P+LG+C+GmQ +a ++g+kv+  +e+e 
  EHT99542.1  13 ILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIR--EFNPSGIILSGGPESTTEHDSPRAPDYVFTAGVPVLGVCYGMQTMAMQLGGKVEGSNEREF 109
                 79***************************9999995..69****************************************************9999999 PP

                 EEEEEEEEETTT.......CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTT.EEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 101 hggtmrlgddet.......allyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknp.fvgvQFHPEststpegpellfnflik 189
                   ++ +++  ++       a+    k+ ++++++H+++v+     pa+++ +a + ++    +i+ ++++ f+gvQFHPE+t+t +g ++l++f+i+
  EHT99542.1 110 GYAQVEVNTASAlirdiedAISASGKPLLDVWMSHGDKVTA---IPADFVTVAST-ET-CPFAIMANEEKrFYGVQFHPEVTHTRQGLRMLERFVID 201
                 9999999997789999999777777799************9...*****988888.55.588999988866***********************986 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   5.7e-10     1e-06       7      47 ..     217     256 ..     212     296 .. 0.75
   2 !    4.9   0.0    0.0067        12     148     177 ..     374     403 ..     369     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 5.7e-10
                   HHHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEE CS
  NAD_synthase   7 dflkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenv 47 
                   d ++   ++ g ++v+lGlSGGvDSs++a+l  +a+gk+  
    EHT99542.1 217 DAVERLRAQVGDDKVILGLSGGVDSSVTAMLLHRAIGKN-L 256
                   4444444566789***********************875.3 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0067
                   BETTTTS-HHHHHHHHHHTT--HHHHCS-- CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPervlkkpP 177
                   ++p+ el+K ev+++  el+ P  +l ++P
    EHT99542.1 374 VEPLRELFKDEVRKIGLELGLPYDMLYRHP 403
                   68**********************999988 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.9e-11   3.3e-08     103     216 .]      78     184 ..      74     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.9e-11
  Peptidase_C26 103 ergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgviEa 198
                    ++gvP+lg+C G+q ++++lGG++  + e++ g+ +     +++++ a+  + + +++   g+   +v   H   ++ +  ++  +A +e  +  +
     EHT99542.1  78 TAGVPVLGVCYGMQTMAMQLGGKVEGSNEREFGYAQV----EVNTASALIRDIEDAISA-SGKPLLDVWMSHGDKVTAIPADFVTVASTE--TCPF 166
                    679********************99888764444433....333333333333333333.3447799999*************8887665..4555 PP

  Peptidase_C26 199 ieseeakafvlgvQwHPE 216
                      + ++++ ++gvQ+HPE
     EHT99542.1 167 AIMANEEKRFYGVQFHPE 184
                    555555669********9 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   6.1e-08   0.00011       2      33 ..     230     262 ..     229     274 .. 0.84
   2 ?   -0.6   0.0      0.25   4.6e+02     165     186 ..     374     395 ..     365     398 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.1e-08
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeq.gyevigvflk 33 
                    kv+ +lSgGVDSsv+a+ll+++ g++++ vf+ 
     EHT99542.1 230 KVILGLSGGVDSSVTAMLLHRAiGKNLTCVFVD 262
                    8******************99735777777766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.25
  tRNA_Me_trans 165 lfPlgeltKeevrkiAkeagla 186
                    + Pl el K+evrki  e gl+
     EHT99542.1 374 VEPLRELFKDEVRKIGLELGLP 395
                    569************9999886 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.31   5.5e+02      11      31 ..      44      64 ..      41      65 .. 0.85
   2 !   15.7   0.0     5e-06     0.009       6      43 ..     215     254 ..     212     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.31
  Asn_synthase 11 krrlradvpvGalLSGGlDSS 31
                  + + r   p G+ LSGG  S+
    EHT99542.1 44 EAQIREFNPSGIILSGGPEST 64
                  67899999*********7776 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5e-06
  Asn_synthase   6 LedaVkrrl...radvpvGalLSGGlDSSliaalaarqsks 43 
                   +edaV+r l   ++d +v + LSGG+DSS+ a+l+ r   +
    EHT99542.1 215 IEDAVER-LraqVGDDKVILGLSGGVDSSVTAMLLHRAIGK 254
                   7899984.413467889*****************9987654 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   5.1e+03       4      14 ..      55      65 ..      55      66 .. 0.90
   2 !    7.4   0.0    0.0015       2.7       1      34 [.     230     264 ..     230     306 .. 0.76
   3 !    5.2   0.0    0.0071        13     146     178 ..     356     397 ..     333     400 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.8
                EE--SSHHHHH CS
        QueC  4 vllSGGlDStt 14
                ++lSGG  Stt
  EHT99542.1 55 IILSGGPESTT 65
                589******98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0015
                 EEEEE--SSHHHHHHHHHHHHH-.SEEEEEEEESS CS
        QueC   1 kavvllSGGlDSttvlalakkeg.kevealtfdYg 34 
                 k+++ lSGG+DS++ ++l ++++ k+++++ +d g
  EHT99542.1 230 KVILGLSGGVDSSVTAMLLHRAIgKNLTCVFVDNG 264
                 57888********9998887764266776666655 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0071
                 HH.........HTS--EEE-TTTT--HHHHHHHHHHTTHHHH CS
        QueC 146 lg.........edkkieieaPlidlsKaeivklgkelgvple 178
                 +          ++ k+ ++ Pl +l K e+ k+g elg+p++
  EHT99542.1 356 IKshhnvgglpKEMKMGLVEPLRELFKDEVRKIGLELGLPYD 397
                 2233444466688999**********************9986 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.5e-05     0.027       4      51 ..     229     277 ..     226     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
        ThiI   4 gkvlaLlSgGiDSpVaaylllkR..Gcrvvlvhlknepgtseeaiekvek 51 
                 +kv++ lSgG+DS V+a ll +R  G +  +v+++n +   +ea++++ +
  EHT99542.1 229 DKVILGLSGGVDSSVTAMLL-HRaiGKNLTCVFVDNGLLRLNEAQQVLDM 277
                 689999*********99665.5536899********99999999887765 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-05      0.15       2      63 ..     231     294 ..     230     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.2e-05
                  EEEE--SSCTCHHHHHHHHHHCTT.HEEEEEE-ST.B-HHHHHHHHHHHHHTT-EEEEEE-SCH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkp.vpvvfvdtgh.efpetiefvdeleeryglrlkvyepeee 63 
                  +++  sgG ds+V+  L+ +a  +  + vfvd g    +e  + +d + +++gl++  ++ e +
   EHT99542.1 231 VILGLSGGVDSSVTAMLLHRAIGKnLTCVFVDNGLlRLNEAQQVLDMFGDHFGLNIVHVDGEAR 294
                  56778********98888777766379******9725789999999999999999655555555 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.31       1      41 [.     230     267 ..     230     392 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                 EEEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSST CS
  ATP_bind_3   1 kvlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglre 41 
                 kv++++SgG+DS +  +ll++       +l+++ vd gl  
  EHT99542.1 230 KVILGLSGGVDSSVTAMLLHRAIG---KNLTCVFVDNGLLR 267
                 5899**********9999999854...58888888888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4275.30
//
Query:       EHT99543.1  [L=488]
Description: IMP dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.2e-159  530.1   9.5   2.5e-159  529.9   9.5    1.0  1  IMPDH         IMP dehydrogenase / GMP reductase domain
      3e-15   56.4   1.9    7.2e-07   29.6   0.0    3.4  3  CBS           CBS domain
    4.8e-10   39.3  14.6    6.1e-05   22.6   8.0    2.7  3  NMO           Nitronate monooxygenase
    3.6e-09   36.1   7.6    7.8e-08   31.7   6.2    2.4  2  FMN_dh        FMN-dependent dehydrogenase
    0.00018   21.1   2.3     0.0082   15.6   0.3    2.3  2  His_biosynth  Histidine biosynthesis protein
     0.0055   16.0   9.1     0.0075   15.5   2.5    2.3  2  DHO_dh        Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
      0.018   14.2   4.8       0.11   11.7   4.8    2.4  1  NanE          Putative N-acetylmannosamine-6-phosphate epimer
       0.03   13.7   6.8      0.086   12.2   2.6    2.4  2  TMP-TENI      Thiamine monophosphate synthase
      0.062   12.4   9.3      0.022   13.9   6.0    1.8  2  Glu_synthase  Conserved region in glutamate synthase
      0.065   12.5   7.5      0.026   13.8   3.2    2.5  3  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.9   9.5  1.4e-162  2.5e-159       1     345 []       8     473 ..       8     473 .. 0.99

  Alignments for each domain:
  == domain 1  score: 529.9 bits;  conditional E-value: 1.4e-162
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 +ltfddvllvpa+s+vlp+++dl+t+ltk+i+l+iP++saamdtvte+ +Aiala+eGg+g+ihkn+sie+qa+ev+kvk++                 
  EHT99543.1   8 ALTFDDVLLVPAHSTVLPNTADLSTQLTKNIRLSIPMLSAAMDTVTEAGLAIALAQEGGLGFIHKNMSIERQADEVRKVKKHesgvvtepqtvlptttl 106
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  EHT99543.1 107 aevkalterngfagypvvnaknelvgiitgrdvrfvtdlnqpvtavmtpkerlvtvkegeardvvlqrmhekrvekalvvddsfhllgmitvkdfqkae 205
                 *************************************************************************************************** PP

                 ..TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ..pnaakdekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsi 179
                   pna+kd++grl+vgaavg+ + ++erv+alv+agvdvl++ds+hghse+vl+ ++e ++k++++e+++Gnvat +ga aL+eag+ avkvGiGpGsi
  EHT99543.1 206 rkPNACKDAQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLEIVGGNVATGAGALALVEAGVSAVKVGIGPGSI 304
                 *************************************************************************************************** PP

                 BHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH-SS-TTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 180 CttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkkgskdryf 278
                 Cttr+v+gvGvpq+tAv+++++a + +g+pviaDGGi++sgdi+kA+aaGa++vm+Gs+lagteEspge+ l++gr +K+yrGmgslgam+kgs+dryf
  EHT99543.1 305 CTTRIVTGVGVPQITAVSDAVAALEGTGIPVIADGGIRFSGDIAKAIAAGASCVMVGSMLAGTEESPGEIELYQGRAFKSYRGMGSLGAMSKGSSDRYF 403
                 *************************************************************************************************** PP

                 -...-...-SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HHHHHHHS-- CS
                 x.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 279 q.kke...klvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvritaaglkeshvH 345
                 q + +   klvpeG+egrv+ykg++ke+v+q +gglrs+mg +G+ ti++l++ka+fvri+ ag++eshvH
  EHT99543.1 404 QtD-NaadKLVPEGIEGRVAYKGRLKEIVHQQMGGLRSCMGLTGCPTIDDLRTKAEFVRISGAGINESHVH 473
                 *52.2245**************************************************************9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     4e-10   7.2e-07       7      52 ..      95     140 ..      84     144 .. 0.91
   2 !   23.0   0.3   4.5e-08     8e-05       1      52 [.     149     202 ..     149     206 .. 0.87
   3 ?    0.9   0.0      0.36   6.4e+02      15      40 ..     317     340 ..     302     345 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4e-10
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 +++ tv p+ttl+e+  l +++g+ ++PVV+  ++lvGi+t rD+ 
  EHT99543.1  95 TEPQTVLPTTTLAEVKALTERNGFAGYPVVNAKNELVGIITGRDVR 140
                 5677***************9999*******99999*********86 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.5e-08
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 V+++mt+  ++vtv++ +    +l++m ek+v   +VVd++ +l+G++t +D  
  EHT99543.1 149 VTAVMTPkeRLVTVKEGEARDVVLQRMHEKRVEKALVVDDSFHLLGMITVKDFQ 202
                 67898887788****************999986555**9999**********75 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.36
                 TSB.HHHHHHHHHHHTSSEEEEEETTT CS
         CBS  15 dtt.leealelmrekgvsrlPVVdedg 40 
                 + t +++a+  +  +g  ++PV+ + g
  EHT99543.1 317 QITaVSDAVAAL--EGT-GIPVIADGG 340
                 444499999999..775.****95444 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.4   1.6e-07   0.00028       2      64 ..      32      97 ..      31     186 .. 0.76
   2 ?   -1.9   0.0      0.96   1.7e+03     224     252 ..     158     186 ..     120     231 .. 0.78
   3 !   22.6   8.0   3.4e-08   6.1e-05     186     232 ..     319     371 ..     224     379 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-07
         NMO  2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvka....ltdkP 64
                ++lt+ +    p+  + m  +++a La a +++GgLG++    ++  r a+e+rkvk+    ++++P
  EHT99543.1 32 TQLTKNIRLSIPMLSAAMDTVTEAGLAIALAQEGGLGFIH-KNMSIERQADEVRKVKKhesgVVTEP 97
                56788888999*****************************.88899999999999986222255555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.96
         NMO 224 rfLltkesdakdahkkklleaklddtelt 252
                 r++  ke +a+d++ +++ e+ +++ +++
  EHT99543.1 158 RLVTVKEGEARDVVLQRMHEKRVEKALVV 186
                 67777888899998888888887776654 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 3.4e-08
         NMO 186 pqvldavd......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesd 232
                   v dav+      iPviA GGi    ++a a+a+GAs v +g+ + +t+es+
  EHT99543.1 319 TAVSDAVAalegtgIPVIADGGIRFSGDIAKAIAAGASCVMVGSMLAGTEESP 371
                 45777777888****************************************97 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   6.2   4.3e-11   7.8e-08     222     301 ..     276     362 ..     187     370 .. 0.83
   2 ?    3.2   0.0      0.02        37     316     344 ..     428     456 ..     421     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.3e-11
                 EEE-SHHHHHHHHHTTESEEEE--GGG.....TSSTT-.--HHHCHHHHHHHH..S.S-EEEESS--SHHHHHHHHHTT-SEEEESH CS
      FMN_dh 222 KGvltaedakraveaGvdgivvSNHGG.....Rqldga.patidvLpeiveavggr.ievlvDgGirrGsDvlkAlalGAdavllGR 301
                   v t + a  +veaGv+++ v    G     R + g+ ++ i +  + v+a++g  i+v++DgGir   D++kA+a GA++v++G 
  EHT99543.1 276 GNVATGAGALALVEAGVSAVKVGIGPGsicttRIVTGVgVPQITAVSDAVAALEGTgIPVIADGGIRFSGDIAKAIAAGASCVMVGS 362
                 557888899999999999999988888566666666542566778888899999866****************************96 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHT-SBHHHHHCG CS
      FMN_dh 316 ervleilraelertmallGvksvaeldrs 344
                 +++++  +  l+++m l+G+ ++++l+ +
  EHT99543.1 428 KEIVHQQMGGLRSCMGLTGCPTIDDLRTK 456
                 666777777899*************9865 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0082        15      64     117 ..     210     263 ..     186     299 .. 0.82
   2 !   15.6   0.3   4.6e-06    0.0082      69     105 ..     328     364 ..     308     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0082
                   HHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHH CS
  His_biosynth  64 lveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpelikelae 117
                   + +    ++++   vG G  + e+v++l+ ag+d + i ++  ++  +++++ e
    EHT99543.1 210 ACKDAQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRE 263
                   55556667778889************************9999888877776654 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.6e-06
                   HHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHH CS
  His_biosynth  69 aeevfipvqvGGGIrsledveelleagadkviigtaa 105
                   +e + ipv  +GGIr   d+++++ aga+ v++g++ 
    EHT99543.1 328 LEGTGIPVIADGGIRFSGDIAKAIAAGASCVMVGSML 364
                   3445788888888888888888888888888888875 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.7     0.013        24     235     274 ..     262     299 ..     256     313 .. 0.79
   2 !   15.5   2.5   4.2e-06    0.0075     242     276 ..     330     364 ..     310     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.013
                 HHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESH CS
      DHO_dh 235 relykrlkkeipiIgvGGiesgeDalekieaGAslvqvyt 274
                 re +++   ++ i+g G + +g  al  +eaG s+v+v+ 
  EHT99543.1 262 RETRAKYP-DLEIVG-GNVATGAGALALVEAGVSAVKVGI 299
                 55555444.677777.89*******************985 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.2e-06
                 TT.S-EEEESS--SHHHHHHHHHHTECEEEESHHH CS
      DHO_dh 242 kkeipiIgvGGiesgeDalekieaGAslvqvytal 276
                    ip+I+ GGi  + D    i aGAs v v++ l
  EHT99543.1 330 GTGIPVIADGGIRFSGDIAKAIAAGASCVMVGSML 364
                 456*****************************987 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.8   5.9e-05      0.11      56     178 ..     233     366 ..     229     370 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.9e-05
                 HHHHHHTTT-SEEEEE--SS--T--HHHHHHHHHHH-...-EEEEE-SSHHHHHHHHHTT-SEEE-TT...TTSSTTS-...SS--HH....HHHHHHH CS
        NanE  56 dideLaaagadiialDatdrerpvtieelikkikeky...qllmaDistleeglvakklGvdivGttl...sGytkeeek..aepDfa....lvkalse 142
                  +d+L+aag+d++ +D+ + + +  ++  i++ + ky    ++  +++t   +l+  ++Gv  v   +   s  t++       p ++     v al  
  EHT99543.1 233 RVDALVAAGVDVLLIDSSHGHSEGVLQ-RIRETRAKYpdlEIVGGNVATGAGALALVEAGVSAVKVGIgpgSICTTRIVTgvGVPQITavsdAVAALEG 330
                 59999**********998876654444.45666667776666667777776666666666666533331111122222222333333300015788999 PP

                 TT--EEEES---SHHHHHHHHTT--SEEEE-HHHH- CS
        NanE 143 aglkviaeGrintPekakkaieiGvdavvvGsaitr 178
                 +g+ via+G i      +kai  G+ +v+vGs ++ 
  EHT99543.1 331 TGIPVIADGGIRFSGDIAKAIAAGASCVMVGSMLAG 366
                 9*******************************9865 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.031        55      59     121 ..     183     246 ..     156     251 .. 0.79
   2 ?   12.2   2.6   4.8e-05     0.086      86     179 ..     261     362 ..     258     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.031
    TMP-TENI  59 pliindrvdlalavgadgvHlgq.ddlpvaearellgpdliiGlSvhsleeaeeaealgadYig 121
                 +l+++d ++l   + ++     + +  ++++a+  l  ++ +G+ + ++e + ++ a+g+d + 
  EHT99543.1 183 ALVVDDSFHLLGMITVKDFQKAErKPNACKDAQGRLRVGAAVGAGAGNEERVDALVAAGVDVLL 246
                 567777777777766655444432666889999999999********************99876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.8e-05
    TMP-TENI  86 vaearellgpdliiGlSvhsleeaeeaealgadYigvGpifpTdtKkda.eplgleglkelaeale......iPvvaiGGitle.nvaevleagadgva 176
                 ++e r+  ++  i+G  v + + a+++ ++g++ + vG    + + +   + +g+ +++++++a+       iPv+a GGi+ + ++a++++aga+ v 
  EHT99543.1 261 IRETRAKYPDLEIVGGNVATGAGALALVEAGVSAVKVGIGPGSICTTRIvTGVGVPQITAVSDAVAalegtgIPVIADGGIRFSgDIAKAIAAGASCVM 359
                 6788899999999***************9**99987776555555555566777777777777777666999**********7549***********99 PP

    TMP-TENI 177 vvs 179
                 v s
  EHT99543.1 360 VGS 362
                 977 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.66   1.2e+03     198     238 ..     212     252 ..     205     264 .. 0.77
   2 ?   13.9   6.0   1.2e-05     0.022     244     304 ..     306     362 ..     273     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.66
                   HHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT- CS
  Glu_synthase 198 kevnkeakvsvKlvaeagvetiaagvakanadiilidGleG 238
                   k+++ + +v+  ++a+ag e     ++ a++d++lid ++G
    EHT99543.1 212 KDAQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHG 252
                   56666777888888888776655559999999999998887 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.2e-05
                   EHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 244 pkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigt 304
                    + ++  +G+P ++a++ ++ +l  +g    + +iadGg++ + d++ka+a GA  v +g+
    EHT99543.1 306 TTRIVTGVGVPQITAVSDAVAALEGTG----IPVIADGGIRFSGDIAKAIAAGASCVMVGS 362
                   45678889***************9877....689***********************9997 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7     3e+03      61      71 ..      19      29 ..      11      38 .. 0.78
   2 ?   -1.0   0.0      0.51   9.1e+02     174     206 ..     218     250 ..     184     264 .. 0.77
   3 ?   13.8   3.2   1.5e-05     0.026     154     212 ..     308     369 ..     274     397 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
                CTSEEEEE-TT CS
        ThiG 61 kevtllPntaG 71
                 + t+lPnta 
  EHT99543.1 19 AHSTVLPNTAD 29
                567999**996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.51
                 -SS-BEEES---SHHHHHHHHHTT-SEEEESHH CS
        ThiG 174 akvPvivDAGigspsdaaqamelGadavllnta 206
                 ++v   v AG g+ + + + +  G+d +l++++
  EHT99543.1 218 LRVGAAVGAGAGNEERVDALVAAGVDVLLIDSS 250
                 556667788888888888888888888887765 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.5e-05
                 STTS----S-HHHHHHHH...HH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSS CS
        ThiG 154 piGsglGllnkealkiii...eeakvPvivDAGigspsdaaqamelGadavllntavaeakd 212
                  i +g G+ + +a++  +   e + +Pvi D Gi+ + d+a+a+  Ga+ v++ + +a +++
  EHT99543.1 308 RIVTGVGVPQITAVSDAVaalEGTGIPVIADGGIRFSGDIAKAIAAGASCVMVGSMLAGTEE 369
                 5667777777666664440115568******************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3563.34
//
Query:       EHT99544.1  [L=457]
Description: exonuclease VII, large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-104  347.5   4.4   9.8e-104  347.2   4.4    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
    1.2e-31  108.7   0.0    7.3e-31  106.2   0.0    2.1  2  tRNA_anti_2      OB-fold nucleic acid binding domain
      9e-06   25.6   0.0    1.8e-05   24.6   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.045   14.0   0.0       0.61   10.3   0.0    2.5  2  bMG10            Bacterial Alpha-2-macroglobulin MG10 domain
      0.096   12.6   0.0         28    4.7   0.0    3.0  3  DUF5348          Domain of unknown function (DUF5348)


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.2   4.4  2.7e-107  9.8e-104       1     303 [.     126     440 ..     126     441 .. 0.97

  Alignments for each domain:
  == domain 1  score: 347.2 bits;  conditional E-value: 2.7e-107
  Exonuc_VII_L   1 lfdeerkkplpklpkrigvvtsptgaairDilrtlkrrgplveillfpalvQGeeaaaeiikalekanalkeaDvliiaRGGGSleDLwaFndeela 97 
                   lf++e+kkplp+  k++gv+ts+tgaa++D+lr+l+rr p++ ++++p++vQG +a+a i++a+e an+++e+Dvli++RGGGSleDLw+Fnde++a
    EHT99544.1 126 LFAPEHKKPLPQPAKQVGVITSATGAALHDVLRVLHRRDPSLPVVIYPTAVQGVDAPAAIVRAIEIANQRAECDVLIVGRGGGSLEDLWSFNDERVA 222
                   79*********************************************************************************************** PP

  Exonuc_VII_L  98 raiaaskiPvisavGHEtDttiaDfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrl..kspeellerkrqrl 192
                   rai+as+iPv+savGHEtD+tiaDfvAdlrapTP+aaAe+v++++ el++ql+++++rle a++ +l ++++ +++l++rl  ++p+ +l+r++  l
    EHT99544.1 223 RAIFASHIPVVSAVGHETDVTIADFVADLRAPTPSAAAEIVSRNQLELLRQLQSQQQRLEMAMDYYLARQQRLFSRLDHRLqqQHPQLRLARQQTLL 319
                   *********************************************************************************7449999********* PP

  Exonuc_VII_L 193 deleerleralkkqlkkkrerleelkerl.k....ekleekkerlkklkerle.....lleekkerleeleeklealsplkvLkrGyaivrkedgkv 279
                    +l++rl  a++++l++++++ ++l++rl +    e+l +++++l++++ rl+     +l++ k+r+ +l+++le +spl++L+rG++++++++g+v
    EHT99544.1 320 FRLQQRLGDAMETRLRHASRQQDRLAQRLaQqqpqERLYQAQKSLQNWHYRLQqamekMLNRDKQRFGQLAAQLEGVSPLATLARGFSVTTDTHGQV 416
                   *****************************768998889999999988888888888788*********************************99*** PP

  Exonuc_VII_L 280 vtsakdlkkgdeleirladgevka 303
                   v+++ +l+kgd+l++rl+dg v++
    EHT99544.1 417 VKKTGQLNKGDRLRTRLDDGWVES 440
                   ********************9986 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0     2e-34   7.3e-31       1      94 [.      10     102 ..      10     103 .. 0.97
   2 ?   -0.6   0.0      0.43   1.5e+03      13      31 ..     428     445 ..     415     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 2e-34
  tRNA_anti_2   1 lsVseltraikelleaelkkavwvrGeisnlkrkasghvYftLkDekakisavifrsraaklkftledGmkVlvkgrlsvYeprGsyqlivedi 94 
                  ++Vs l++ +++lle+e+ + vw+ +eisn++++asgh+YftLkD+ a++++++fr+++++++f++++G+++lv++++++YeprG+yqli+e++
   EHT99544.1  10 FTVSRLNTTVRQLLENEM-GLVWLSAEISNFTQPASGHWYFTLKDDGAQVRCAMFRNSNRRVTFRPQHGQQILVRANITLYEPRGDYQLIIESM 102
                  79****************.88**********8888*********************************************************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.43
  tRNA_anti_2  13 lleaelkkavwvrGeisnl 31 
                  +l ++l ++ wv+ ++++l
   EHT99544.1 428 RLRTRL-DDGWVESQVTQL 445
                  566677.448*******98 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.1e-09   1.8e-05       1      74 [.      30     103 ..      30     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.1e-09
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC.TTSSEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr.pggelelkveeie 74 
                      V++ +++++   +  +++ +++l+D+ +++++ +fr++ +++  + + G+ + v+  ++ + p+g+++l++e++ 
       EHT99544.1  30 VWLSAEISNFT-QPASGHWYFTLKDDGAQVRCAMFRNSNRRVTFRPQHGQQILVRANITLYePRGDYQLIIESMH 103
                      78889999995.999**********************************************98889*****9985 PP

>> bMG10  Bacterial Alpha-2-macroglobulin MG10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017      0.61      22      65 ..      73     118 ..      55     135 .. 0.76
   2 ?    0.3   0.1      0.21   7.7e+02      11      33 ..     409     433 ..     401     435 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
       bMG10  22 klkvGdkvrvrltvttprdl..eyvaledplPAGlepvnpslgtes 65 
                 + + G++++vr ++t  +++  ++ ++e++ PAG  ++++++++ +
  EHT99544.1  73 RPQHGQQILVRANITLYEPRgdYQLIIESMHPAGEGLLQQQFEQLK 118
                 6899**********9666665599**********999999998655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
       bMG10  11 legkevsksda..klkvGdkvrvrl 33 
                   +++ +  ++  +l++Gd++r+rl
  EHT99544.1 409 TTDTHGQVVKKtgQLNKGDRLRTRL 433
                 33333333333349********998 PP

>> DUF5348  Domain of unknown function (DUF5348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.49   1.7e+03      48      68 ..      45      59 ..      28      60 .. 0.71
   2 ?    3.9   0.0     0.014        50      29      54 ..     267     291 ..     258     303 .. 0.79
   3 ?    4.7   0.0    0.0079        28      23      43 ..     422     442 ..     405     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.49
     DUF5348 48 gewYlvgdglklllleglrvr 68
                g wY++   +     +g++vr
  EHT99544.1 45 GHWYFTL--K----DDGAQVR 59
                5699998..2....3566665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
     DUF5348  29 slevlvedeWvptriEmdngewYlvg 54 
                  le+l + + +  r+Em + ++Yl  
  EHT99544.1 267 QLELLRQLQSQQQRLEMAM-DYYLAR 291
                 6788888888999****96.***987 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0079
     DUF5348  23 gLhcGeslevlvedeWvptri 43 
                 +L+ G++l  +++d Wv+ ++
  EHT99544.1 422 QLNKGDRLRTRLDDGWVESQV 442
                 589**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3178.24
//
Query:       EHT99545.1  [L=110]
Description: hypothetical protein CKS_1538 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 905.69
//
Query:       EHT99546.1  [L=813]
Description: quinate/shikimate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-41  138.4   2.4    5.8e-08   32.3   0.2    8.4  8  PQQ            PQQ enzyme repeat
    1.2e-18   67.6   0.4    1.1e-05   25.2   0.0    4.6  4  PQQ_2          PQQ-like domain
  ------ inclusion threshold ------
      0.023   15.2   0.3       0.12   12.9   0.1    8.5 12  PQQ_3          PQQ-like domain
        0.1   12.8   0.0       0.29   11.3   0.0    1.7  1  ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas
        5.1    6.3   6.8        9.5    5.4   6.8    1.4  1  DUF3273        Protein of unknown function (DUF3273)
        5.6    6.8  18.0        5.3    6.9  17.0    1.5  1  7TMR-DISM_7TM  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.27   8.2e+02      22      35 ..     201     214 ..     200     216 .. 0.83
   2 !   20.6   0.0   9.9e-08    0.0003       1      30 [.     230     259 ..     230     265 .. 0.91
   3 !    7.7   0.0    0.0012       3.7       5      28 ..     307     330 ..     303     336 .. 0.80
   4 !   19.8   0.0   1.7e-07   0.00052       8      34 ..     376     402 ..     373     405 .. 0.90
   5 !   32.3   0.2     2e-11   5.8e-08       8      37 ..     454     483 ..     452     484 .. 0.89
   6 !   11.0   0.0   0.00011      0.33       3      27 ..     504     528 ..     502     537 .. 0.90
   7 !    8.0   0.0   0.00099         3       8      30 ..     685     707 ..     678     713 .. 0.84
   8 !   28.6   0.0   2.9e-10   8.6e-07       1      37 [.     738     775 ..     738     776 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.27
                 EEEEEESSSCGSSE CS
         PQQ  22 vlWrfktggpvlsl 35 
                 v W+++tg+ + s 
  EHT99546.1 201 VAWTYRTGDIPESP 214
                 78******998775 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 9.9e-08
                 TEEEEEETTSEEEEEETTTCCEEEEEESSS CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktgg 30 
                 +++yl+++++++ A+ ad+Gk +W+ ++++
  EHT99546.1 230 NTLYLCTPHNNVIAVEADSGKQIWKREINA 259
                 789**********************99876 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0012
                 EEETTSEEEEEETTTCCEEEEEES CS
         PQQ   5 lgsadGylyAlDadTGkvlWrfkt 28 
                 + + d +l A++ad+G+ +  f +
  EHT99546.1 307 MNTIDARLIAINADNGEFCEDFGN 330
                 557899***********9988876 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 1.7e-07
                 TTSEEEEEETTTCCEEEEEESSSCGSS CS
         PQQ   8 adGylyAlDadTGkvlWrfktggpvls 34 
                 ++G+l+ +D+ TGk++W f++g+++ +
  EHT99546.1 376 PGGVLRGFDVITGKMRWAFDPGNVDPN 402
                 689*******************99875 PP

  == domain 5  score: 32.3 bits;  conditional E-value: 2e-11
                 TTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   8 adGylyAlDadTGkvlWrfktggpvlslpi 37 
                 ++  ++AlDa+TGk++W++++++++l++++
  EHT99546.1 454 YGASVLALDATTGKEKWVYQNVHNDLWDFD 483
                 55679**********************986 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00011
                 EEEEETTSEEEEEETTTCCEEEEEE CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfk 27 
                 v++g + G ++ lD+ TGk l +++
  EHT99546.1 504 VVIGGKTGMIFVLDRLTGKPLTKVE 528
                 899*****************99987 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.00099
                 TTSEEEEEETTTCCEEEEEESSS CS
         PQQ   8 adGylyAlDadTGkvlWrfktgg 30 
                 + G+l A+D++T k++W++++g 
  EHT99546.1 685 PFGTLSAIDMKTQKIVWQVPVGT 707
                 5599***************9986 PP

  == domain 8  score: 28.6 bits;  conditional E-value: 2.9e-10
                 TEEEEE.ETTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   1 gvvylg.sadGylyAlDadTGkvlWrfktggpvlslpi 37 
                 g v+++ + d+yl+A+D +TGk++W+ +++   ++ p+
  EHT99546.1 738 GLVFIAgTQDYYLRAFDSATGKEVWKARLPVGSQGGPM 775
                 5789999*********************9988888776 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   9.8e-08   0.00029      90     153 ..     193     261 ..     177     268 .. 0.73
   2 !    5.2   0.0    0.0047        14     114     146 ..     350     392 ..     302     396 .. 0.60
   3 !   10.3   0.0   0.00013      0.38      85     146 ..     455     525 ..     437     538 .. 0.70
   4 !   25.2   0.0   3.6e-09   1.1e-05       3      71 ..     687     773 ..     685     796 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 9.8e-08
       PQQ_2  90 aldaedGkrlWstqqrse.epaelrssaspava....gdtvvvgessgklvaldpkdGkvlWerel.aap 153
                 + + +d +++W+ +++++ +  + +  a++  +    g+t+++ ++ +++ a+ +++Gk++W+re+ a++
  EHT99546.1 193 RDNVKDLQVAWT-YRTGDiPESPTGNGAEDQETplqvGNTLYLCTPHNNVIAVEADSGKQIWKREInAQA 261
                 446788889***.999954554433333333223446*****************************5554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0047
       PQQ_2 114 ssaspavagdtvvvges..........sgklvaldpkdGkvlW 146
                  +++p++ag tvvvg+           +g l ++d+ +Gk +W
  EHT99546.1 350 LTSAPTLAGTTVVVGGRvadnvktdmpGGVLRGFDVITGKMRW 392
                 3456666677777777777777788889999999999999999 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00013
       PQQ_2  85 dgqlialdaedGkrlWstqqrseepae..lrssaspava........gdtvvvgessgklvaldpkdGkvlW 146
                 + +++alda++Gk++W  +q+ + ++    ++   + ++        +  vv+g+  g + +ld  +Gk+l 
  EHT99546.1 455 GASVLALDATTGKEKWV-YQNVHNDLWdfDLPMQPSLIDfpmkdgstKPAVVIGGKTGMIFVLDRLTGKPLT 525
                 33899************.998854443333333333333445556667778888888888888988888865 PP

  == domain 4  score: 25.2 bits;  conditional E-value: 3.6e-09
       PQQ_2   3 gvvsaldaatGaelWrvdlar...................plgggvsravlsggtlfva.tgggrlvaldaatGkvlWettlegpvvga 71 
                 g++sa+d +t +++W+v +++                   p  gg+  a+ +gg +f+a t    l a+d atGk++W+++l++  +g 
  EHT99546.1 687 GTLSAIDMKTQKIVWQVPVGTvedtgpfgikmrakmpigmPTLGGT-LAT-QGGLVFIAgTQDYYLRAFDSATGKEVWKARLPVGSQGG 773
                 899**************55444445656666665555555355555.377.9999999966777899***************8875554 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.82   2.5e+03      13      33 ..      14      37 ..       8      41 .. 0.72
   2 ?   -3.3   0.1       4.9   1.5e+04       1      20 [.      77      85 ..      73      90 .. 0.48
   3 ?    9.3   0.0   0.00054       1.6       2      40 .]     200     248 ..     200     248 .. 0.79
   4 ?    0.1   0.0      0.43   1.3e+03       1      12 [.     249     260 ..     249     275 .. 0.82
   5 ?   -3.1   0.0       4.2   1.3e+04      29      39 ..     310     320 ..     287     321 .. 0.67
   6 ?    3.7   0.4     0.032        96      12      37 ..     349     384 ..     342     387 .. 0.77
   7 ?   -3.6   0.0         6   1.8e+04       1       8 [.     388     395 ..     388     403 .. 0.78
   8 ?   -1.1   0.0         1   3.1e+03      30      40 .]     455     465 ..     408     465 .. 0.83
   9 ?   -2.0   0.2       1.9   5.8e+03      14      14 ..     480     480 ..     466     519 .. 0.47
  10 ?   -2.5   0.0       2.7   8.1e+03      31      40 .]     687     696 ..     684     696 .. 0.88
  11 ?   12.9   0.1   4.1e-05      0.12       2      40 .]     698     757 ..     698     757 .. 0.80
  12 ?    1.2   0.1      0.19   5.5e+02       1      18 [.     758     777 ..     758     795 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.82
       PQQ_3 13 vnssp....avdgglvyvgtgdGtl 33
                ++s +    +++ gl ++++g G l
  EHT99546.1 14 IWSVLlglvLLATGLFFAVGG-GQL 37
                555555555789999999998.665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.9
       PQQ_3  1 GevlWsvqlpgpvnsspavd 20
                G+++W+           +vd
  EHT99546.1 77 GTLVWA-----------VVD 85
                334443...........333 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00054
       PQQ_3   2 evlWsvqlpgpvnssp...........avdgglvyvgtgdGtlyAlDaet 40 
                 +v W+++++ ++  sp           + +g+++y  t+ +++ A++a++
  EHT99546.1 200 QVAWTYRTG-DIPESPtgngaedqetpLQVGNTLYLCTPHNNVIAVEADS 248
                 588***999.45567767665666665667*****************986 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.43
       PQQ_3   1 GevlWsvqlpgp 12 
                 G+++W++++ ++
  EHT99546.1 249 GKQIWKREINAQ 260
                 9******99873 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 4.2
       PQQ_3  29 gdGtlyAlDae 39 
                  d +l A++a+
  EHT99546.1 310 IDARLIAINAD 320
                 38899999997 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.032
       PQQ_3  12 pvnsspavdgglvyvgtg..........dGtlyAlD 37 
                 +++s+p+++g +v+vg+            G l+ +D
  EHT99546.1 349 QLTSAPTLAGTTVVVGGRvadnvktdmpGGVLRGFD 384
                 578999**********98776666666666666665 PP

  == domain 7  score: -3.6 bits;  conditional E-value: 6
       PQQ_3   1 GevlWsvq 8  
                 G+ +W+++
  EHT99546.1 388 GKMRWAFD 395
                 88999886 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 1
       PQQ_3  30 dGtlyAlDaet 40 
                   ++ AlDa+t
  EHT99546.1 455 GASVLALDATT 465
                 56789999987 PP

  == domain 9  score: -2.0 bits;  conditional E-value: 1.9
       PQQ_3  14 n 14 
                 +
  EHT99546.1 480 W 480
                 1 PP

  == domain 10  score: -2.5 bits;  conditional E-value: 2.7
       PQQ_3  31 GtlyAlDaet 40 
                 Gtl A+D +t
  EHT99546.1 687 GTLSAIDMKT 696
                 9******987 PP

  == domain 11  score: 12.9 bits;  conditional E-value: 4.1e-05
       PQQ_3   2 evlWsvqlpgpvnssp....................avdgglvyvgtg.dGtlyAlDaet 40 
                 +++W+v+++    ++p                    a+ gglv+++++ d  l+A+D +t
  EHT99546.1 698 KIVWQVPVGTVEDTGPfgikmrakmpigmptlggtlATQGGLVFIAGTqDYYLRAFDSAT 757
                 578888777644466667777778888888888888*********************887 PP

  == domain 12  score: 1.2 bits;  conditional E-value: 0.19
       PQQ_3   1 GevlWsvqlpgpvnssp..a 18 
                 G+++W+ +lp   +++p   
  EHT99546.1 758 GKEVWKARLPVGSQGGPmsY 777
                 9******9998777777542 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.7e-05      0.29      34      64 ..     165     195 ..     161     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.7e-05
                    -GGGB--THHHH-B-GGGHHHHHHHHHHHTT CS
  ACP_syn_III_C  34 peekvvvnldeyGntsaasiplaLdeaveeg 64 
                    ++ k  +n+d+yGnt+  s ++aLd+  +++
     EHT99546.1 165 EKSKQQQNWDNYGNTAGGSRFVALDQITRDN 195
                    5668889******************998854 PP

>> DUF3273  Protein of unknown function (DUF3273)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.8    0.0032       9.5     182     231 ..      35      84 ..      16      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0032
     DUF3273 182 gellgylnlvlfvlagllellvlilfkvlgalytllllvalvaatlWall 231
                 g+l        f++ag++++l  i f   ++ + +l+l+a+v + +Wa++
  EHT99546.1  35 GQLATLGGSWYFLVAGIVIVLSAIQFLRAKSSAVVLFLLAFVGTLVWAVV 84 
                 55555556678************9************************85 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  17.0    0.0018       5.3      98     197 ..      10     109 ..       2     117 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0018
  7TMR-DISM_7TM  98 klllllavllsllllllpllpyteslslaq....llallvillllligikawrkgnkparyfliawlllligvlidilsllgllpsnffteyllqi 189
                    k l + +vll+l+ll++ l++     +la+    ++ l++ ++++l++i  +r + ++  +fl+a++ +l+ +++d+    gl+ + ++++ +++ 
     EHT99546.1  10 KGLRIWSVLLGLVLLATGLFFAVGGGQLATlggsWYFLVAGIVIVLSAIQFLRAKSSAVVLFLLAFVGTLVWAVVDA----GLVFWPLVSRLMVPA 101
                    4455555555555555555533333333333343666666666666667777***********************88....9**9**9999***** PP

  7TMR-DISM_7TM 190 gvllevll 197
                    g+++ ++l
     EHT99546.1 102 GLMILAFL 109
                    ****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.37
# Mc/sec: 6569.08
//
Query:       EHT99547.1  [L=494]
Description: 50S ribosome biogenesis/stability factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-55  185.7   0.4    2.1e-28   98.7   0.0    2.3  2  MMR_HSR1         50S ribosome-binding GTPase
    3.4e-31  107.9   0.0    1.8e-16   60.0   0.0    2.2  2  FeoB_N           Ferrous iron transport protein B
    3.2e-26   91.5   0.1    7.3e-26   90.3   0.1    1.7  1  KH_dom-like      KH-domain-like of EngA bacterial GTPase enzy
      1e-19   70.8   1.4    1.3e-09   37.9   0.1    4.9  2  GTP_EFTU         Elongation factor Tu GTP binding domain
    2.2e-12   47.4   0.0       0.03   14.4   0.0    4.4  4  Dynamin_N        Dynamin family
    8.1e-11   41.7   0.0    8.6e-05   22.0   0.0    2.2  2  AIG1             AIG1 family
      2e-08   34.3   0.0      0.039   13.8   0.0    4.4  4  RsgA_GTPase      RsgA GTPase
    2.2e-06   27.4   0.0      0.015   14.9   0.0    3.0  2  Ras              Ras family
    2.8e-06   27.5   0.1       0.27   11.5   0.0    3.9  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    5.2e-06   26.2   4.5       0.17   11.5   0.1    4.0  4  cobW             CobW/HypB/UreG, nucleotide-binding domain
    8.6e-05   23.1   0.0       0.79   10.2   0.0    2.9  3  ABC_tran         ABC transporter
    9.6e-05   22.2   0.0       0.31   10.7   0.0    3.1  3  AAA_24           AAA domain
    0.00017   21.1   0.0       0.14   11.6   0.0    2.4  2  TniB             Bacterial TniB protein
    0.00017   21.9   0.1        1.3    9.3   0.0    3.4  2  AAA_22           AAA domain
    0.00048   19.6   0.0      0.078   12.4   0.0    2.4  2  SRPRB            Signal recognition particle receptor beta su
     0.0016   18.1   0.2       0.67    9.6   0.0    2.8  3  SRP54            SRP54-type protein, GTPase domain
     0.0023   17.1   0.0        1.2    8.2   0.0    2.3  2  NB-ARC           NB-ARC domain
     0.0024   18.2   0.0        3.9    7.9   0.0    2.7  2  RNA_helicase     RNA helicase
      0.003   17.3   0.2        7.1    6.4   0.0    3.7  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0034   17.2   0.0       0.35   10.6   0.0    3.2  3  ATP_bind_1       Conserved hypothetical ATP binding protein
     0.0038   17.2   0.1        5.2    7.0   0.0    2.9  2  NTPase_1         NTPase
     0.0046   16.0   0.1        6.6    5.6   0.0    3.5  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0056   17.0   0.5        1.8    8.9   0.0    3.0  3  Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
  ------ inclusion threshold ------
      0.017   15.7   0.0        5.4    7.6   0.0    2.6  2  AAA_18           AAA domain
      0.019   15.1   0.0        3.4    7.8   0.0    2.5  2  AAA_33           AAA domain
      0.039   13.5   2.5         16    5.0   0.2    3.8  3  AAA_25           AAA domain
      0.046   13.6   0.0        1.9    8.4   0.0    2.8  3  Ploopntkinase3   P-loop Nucleotide Kinase3
      0.048   13.4   0.0         14    5.5   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
      0.061   12.8   0.0        1.1    8.7   0.0    2.2  2  KTI12            Chromatin associated protein KTI12
      0.076   13.4   0.0         17    5.7   0.0    2.9  2  AAA_16           AAA ATPase domain
      0.089   12.1   0.0        9.6    5.4   0.0    2.4  2  Septin           Septin
      0.097   12.5   1.6       0.38   10.6   0.1    2.5  2  NOG1             Nucleolar GTP-binding protein 1 (NOG1)
       0.11   12.7   0.0         17    5.6   0.0    2.9  3  AAA_28           AAA domain
       0.13   12.3   0.0         18    5.4   0.0    2.6  2  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   3.9e-31   2.1e-28       2     114 .]       5     119 ..       4     119 .. 0.91
   2 !   85.2   0.2   6.3e-27   3.3e-24       2     114 .]     208     325 ..     207     325 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 3.9e-31
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH...HHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek...glgkaflaleeadlillvvdaseeklkpldee 96 
                 va+vGrpNvGKStL+n+lt++  a v+d+pg Trd ++gr +++g+e++++Dt G i+g +++    + ++++la+eead++l++vda+ +++ p d++
  EHT99547.1   5 VALVGRPNVGKSTLFNRLTRTrDALVADFPGLTRDRKYGRAEVEGREFIVIDTGG-IDGTEDGVetrMAEQSLLAIEEADVVLFMVDAR-AGMMPADQQ 101
                 89******************967********************************.8633333333599999999************99.779****** PP

                 HHHHHHHTTSEEEEEEES CS
    MMR_HSR1  97 leelleeakkplilvlnk 114
                 +++ l+ ++k ++lv+nk
  EHT99547.1 102 IAKHLRARQKATFLVANK 119
                 ******9**********8 PP

  == domain 2  score: 85.2 bits;  conditional E-value: 6.3e-27
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS....HHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie....gaseek.glgkaflaleeadlillvvdaseeklkpld 94 
                  aivGrpNvGKStL n+++ge ++ v d+pgtTrd +++ ++ +++e++l+Dt+G+ +    ++  ek ++ k+++a+e+a++++lv+da+ ++++++d
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGEdRVVVYDMPGTTRDSIYIPMERDDREYVLIDTAGVRKrgkiTDTVEKfSVIKTLQAIEDANVVMLVIDAR-AGISDQD 305
                 79******************989*******************999**********522333433444459*******************99.77***** PP

                 HHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  95 eeleelleeakkplilvlnk 114
                  +l  ++ ++++ l++v+nk
  EHT99547.1 306 LSLLGFILNSGRSLVIVVNK 325
                 ******9999********98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   3.5e-19   1.8e-16       3     154 ..       5     156 ..       3     158 .. 0.82
   2 !   45.9   0.0   7.8e-15   4.1e-12       2     154 ..     207     369 ..     206     371 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 3.5e-19
                 EEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn..lernLyLt 98 
                 valvG pnvGk+tlfn+lt ++   v+ +pG t ++k g+ +++g+e+ ++D  Gi   ++  e     +++l+ ee+dvv+ +vda    +  + ++ 
  EHT99547.1   5 VALVGRPNVGKSTLFNRLTRTRdALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAgmMPADQQIA 103
                 89******************983569******************************88776655555555566689**********9753267788888 PP

                 HHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  99 lqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellk 154
                   l   ++ + l+ n++d ++ ++  +d  +L   Lg ++ +++a++++g+ +ll+
  EHT99547.1 104 KHLRARQKATFLVANKTDGLDPDQAIVDFYSLG--LG-EIYAIAASHGRGVTSLLE 156
                 889999999999999999999999988887764..33.666777777777777765 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 7.8e-15
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS...SSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYsl...sayseeekvardflleeepdvvvnvvdatn..lern 94 
                 ++a+vG pnvGk+tl n++ g +   v   pG+t +     ++ +++e+ ++D  G+ +    +++ e  +v +++ + e+++vv+ v+da     +++
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGEDrVVVYDMPGTTRDSIYIPMERDDREYVLIDTAGVRKRgkiTDTVEKFSVIKTLQAIEDANVVMLVIDARAgiSDQD 305
                 789****************9987256679****************************765221555566677777777899*********986436899 PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT....S-EEEEBTTTTBTHHHHHH CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLg....vpvvktsakkkegieellk 154
                 L L+  +l+ g ++v+++n++d ++++  +  +++L+ +Lg      v  +sa +++g+ +l +
  EHT99547.1 306 LSLLGFILNSGRSLVIVVNKWDGLSQEVRDEVKETLDFRLGfidfARVHFISALHGSGVGNLFE 369
                 ************************9998888888899998843333566777777777777765 PP

>> KH_dom-like  KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.1   1.4e-28   7.3e-26       1      80 []     381     461 ..     381     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.4e-28
                  ---HHHHHHHHHHHHCCS--S.ETTCC-EEEEEEEEETTTTEEEEEECSCCCS-HHHHHHHHHHHHHHCT-TTS--EEEEE CS
  KH_dom-like   1 RistseLnrvleeavekhppp.vkgkrlkiyyatqvgtrpptfvlfvndpelvkesykryLenqlreafgfegtPirlkfR 80 
                  R++ts L+r+++ a e h+pp v+g+r+k++ya+ +g +pp +v+++n+ + +++sykryL n +r++++  gtPir++f+
   EHT99547.1 381 RVNTSLLTRIMNMAAEDHQPPlVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFK 461
                  89*******************888*******************************************************98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   7.8e-07   0.00041      90     137 ..      78     125 ..       2     160 .. 0.79
   2 !   37.9   0.1   2.4e-12   1.3e-09       6     190 ..     208     373 ..     205     376 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.8e-07
                 HHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHH CS
    GTP_EFTU  90 glrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlka 137
                 +++ +D+++++vda+ G++p  +++++++++++  ++++ NK D l+ 
  EHT99547.1  78 AIEEADVVLFMVDARAGMMPADQQIAKHLRARQKATFLVANKTDGLDP 125
                 47889***************************************8854 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 2.4e-12
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSS..........GGGH.HHHHHHHHT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGH..........vdFs.kevirglrv 93 
                 ++i+g  + GK+TLt r+l +                          g T +s  i +e   +++++ liDt G           ++Fs  ++ ++++ 
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGEDR-----------------VVVYDMPGTTRDSIYIPME--RDDREYVLIDTAGVrkrgkitdtvEKFSvIKTLQAIED 287
                 67888888888888888883222.................2333345788888888888..88888888888886222222222135642467778999 PP

                 -SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU  94 lDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +++++lv+da+ G+  q   +l  +l+ g  +++++NK D l +e++  v+e   ++     +l   g+ +  +  v f+Sal+g gv +l+e ++e
  EHT99547.1 288 ANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVRDEVKETL-DF-----RL---GFID--FARVHFISALHGSGVGNLFESVTE 373
                 9*****************************************998887777776.55.....23...3332..5679***************99986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.015       7.7       1      20 [.       5      24 ..       5      39 .. 0.89
   2 !   14.4   0.0   5.7e-05      0.03     104     167 ..      53     119 ..      41     120 .. 0.83
   3 !   14.1   0.0   7.1e-05     0.037       1      41 [.     208     249 ..     208     255 .. 0.76
   4 !    7.7   0.1    0.0064       3.4      99     166 ..     251     324 ..     243     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.015
                EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlg 20
                +a+vG  + GKS++ n L++
  EHT99547.1  5 VALVGRPNVGKSTLFNRLTR 24
                799**************986 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.7e-05
                 EEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 104 tlvDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                  ++D+ G+d ++++ +    e    +i++ad++l++++a   ++ ++ +++a++++ ++k t+ v +k
  EHT99547.1  53 IVIDTGGIDGTEDGVEtrmaEQSLLAIEEADVVLFMVDARAGMMPAD-QQIAKHLRARQKATFLVANK 119
                 579*******99987775444555567*****************665.68999************998 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 7.1e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS.---S-EEEEEC CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnp.tTrrplelqlg 41 
                 +a+vG  + GKS++ n +lged  ++   p tTr  + + ++
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPgTTRDSIYIPME 249
                 589******************987776665156666666555 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0064
                 TS-SEEEEE---B-S.SSGTTS......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  99 lvkgltlvDlPGlds.vnkrdq......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                 ++ +++l+D+ G+ +  +  d+        + ++i++a+++++v +a   +s+++ +     + + g++ ++v++
  EHT99547.1 251 DDREYVLIDTAGVRKrGKITDTvekfsvIKTLQAIEDANVVMLVIDARAGISDQDLSL-LGFILNSGRSLVIVVN 324
                 567889********944455559999554456788*****************777554.4455555555444444 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.1e-06    0.0022       4     108 ..       6     107 ..       4     115 .. 0.82
   2 !   22.0   0.0   1.6e-07   8.6e-05       3     105 ..     208     310 ..     206     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.1e-06
                 EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHHHH CS
        AIG1   4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rfteede 101
                  lvG+  +GkS+  N + +++         ++t+  +  +++++g++  ViDT g+  +++  ++      +  ll+ e  +++l+ ++++  +   d+
  EHT99547.1   6 ALVGRPNVGKSTLFNRLTRTRDALVA-DFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTEDGVETRMA---EQSLLAIEEADVVLFMVDARaGMMPADQ 100
                 69**************9887654443.4699************************9777766554444...4457777889****99999988999999 PP

                 HHHHHHH CS
        AIG1 102 kalktlk 108
                 +++k+l+
  EHT99547.1 101 QIAKHLR 107
                 9999886 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.6e-07
                 EEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHH.HHHHHHHHCTT-ESEEEEEEETT.B-SHH CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkisk.eivrclllseegihalllvlslg.rftee 99 
                 + +vG+  +GkS+  N ilg++         + t+ +     ++d+++ + iDT g+    + +d+++k ++++ l+  e+  ++++lv++++  ++++
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGEDRVVVY-DMPGTTRDSIYIPMERDDREYVLIDTAGVRKRGKITDTVEKfSVIKTLQAIED-ANVVMLVIDARaGISDQ 304
                 679******************998776.67899999999999**********************99998467776555555.9**********999999 PP

                 HHHHHH CS
        AIG1 100 dekalk 105
                 d ++l 
  EHT99547.1 305 DLSLLG 310
                 977765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00048      0.25     101     129 ..       4      32 ..       3      63 .. 0.73
   2 ?    0.3   0.0       1.1   5.9e+02      29     116 ..      66     155 ..      60     177 .. 0.59
   3 !   13.8   0.0   7.5e-05     0.039     101     163 ..     207     265 ..     161     268 .. 0.76
   4 ?    2.6   0.0      0.22   1.2e+02      39      71 ..     309     340 ..     282     375 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00048
                  EEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktge 129
                  +++lvG   vGKStL n+l+ + ++ +++
   EHT99547.1   4 VVALVGRPNVGKSTLFNRLTRTRDALVAD 32 
                  5789***************9987776665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.1
                  T--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTH.....TTHHHHHHHCTTSEEEEECSTTSSHHHHH CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktk.....egleelkellkdktsvlvGqSGvGKStLi 116
                   +++++ ++ L+++ee+++ + +v  ++ ++  ++++ +   + +++   ++lv +kt      +++ +  +l  +++ +++ + G G ++L+
   EHT99547.1  66 GVETRMAEQSLLAIEEADVVLFMVDARAGMMPADQQIAKHLRARQKA---TFLVANKTDgldpdQAIVDFYSLGLGEIYAIAASHGRGVTSLL 155
                  56778888888889988888888888888888888444444333333...3333222211211123333333333455555555555555555 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 7.5e-05
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT...TEEEESS-SSSS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae...gglliDtPGfre 163
                    ++vG   vGKStL n++l+e+++ + ++         TT+ +  +++++   + +liDt G+r+
   EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG-------TTRDSIYIPMERddrEYVLIDTAGVRK 265
                  56899*****************8888877766.......888888888877555678888888876 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.22
                  HHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlleeeeeleelkee 71 
                  L ++ ++g ++viv+nK D l++e   +e+ke+
   EHT99547.1 309 LGFILNSGRSLVIVVNKWDGLSQEV-RDEVKET 340
                  55666778899*********99998.4444443 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0021       1.1       2     115 ..       5     121 ..       4     134 .. 0.64
   2 !   14.9   0.0   2.8e-05     0.015       1     158 [.     207     373 ..     207     376 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0021
                 EEEEESTTSSHHHHHHHHHHSSCSSSC.TTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH.....HHHHHHH.TTESEEEEEEETTBHHHHHTHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeey.esTigvdfytkeievdgkevkleiwDTAGqeefk.....slrelyy.rdaegillvyditsresfenvkkw 93 
                 + lvG  +vGK++l +r ++ +       + +  d +  + ev+g+e  + + DT G +  +     +++e+++    e+ ++++ ++ r+    +++ 
  EHT99547.1   5 VALVGRPNVGKSTLFNRLTRTRDALVAdFPGLTRDRKYGRAEVEGRE--FIVIDTGGIDGTEdgvetRMAEQSLlAIEEADVVLFMVDARAGMMPADQQ 101
                 579**************987654333203445467777777777665..66889987654431111134444430444566888999999988888855 PP

                 HHHHHHHSTTTSEEEEEEETTT CS
         Ras  94 veeikrvaeenvpivLvGnKvD 115
                 + +  r  ++  +  Lv+nK+D
  EHT99547.1 102 IAKHLRARQK--ATFLVANKTD 121
                 5554444443..6889999988 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.8e-05
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTS..........GGGHHHHH.HHHTTESEEEEEEETTBHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGq..........eefkslre.lyyrdaegillvyditsresfe 88 
                 Kl +vG  +vGK++l++r   ++    y++       +  i ++  + +  + DTAG           e+f+ +++ + ++da++++lv d     s +
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG-TTRDSIYIPMERDDREYVLIDTAGVrkrgkitdtvEKFSVIKTlQAIEDANVVMLVIDARAGISDQ 304
                 899***************99888888777543.444455555555666667799999533333333337777777624577888888887766666655 PP

                 THHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEE...EBTTTTCTHHHHHHHHHH CS
         Ras  89 nvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelg.lkfle...tSAktnenveeafeellr 158
                 ++ +++  i +  +   ++v+v nK D  + ++v+ e  e+l  +lg + f     +SA +  +v ++fe++++
  EHT99547.1 305 DL-SLLGFILNSGR---SLVIVVNKWDGLS-QEVRDEVKETLDFRLGfIDFARvhfISALHGSGVGNLFESVTE 373
                 55.45555555544...5899999999885.7899988888888888888876333699999999999998876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00056       0.3       2      24 ..       5      26 ..       4     122 .. 0.65
   2 !   11.5   0.0   0.00051      0.27       1      23 [.     207     229 ..     207     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00056
                EEEESSTTSSHHHHHHCHCT-CC CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkf 24
                v lvG  +vGK++l++r+++   
  EHT99547.1  5 VALVGRPNVGKSTLFNRLTRT-R 26
                679**************9954.3 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00051
                 EEEEESSTTSSHHHHHHCHCT-C CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedk 23 
                 K+ +vG  +vGK++l +r++ ++
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGED 229
                 899***************98765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11        60       1      25 [.       3      27 ..       3      34 .. 0.88
   2 !   11.5   0.1   0.00032      0.17      83     157 ..      50     127 ..      36     134 .. 0.78
   3 ?   -0.6   0.0       1.7   8.7e+02       4      22 ..     209     228 ..     207     241 .. 0.83
   4 !    9.8   0.2    0.0011      0.55      82     164 ..     252     339 ..     241     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
                EEEEEEESTTCCHHHHHHHHHCT-- CS
        cobW  1 pvtvltGflGsGKTtLlnhllenra 25
                pv+ l+G +  GK+tL n+l++ r+
  EHT99547.1  3 PVVALVGRPNVGKSTLFNRLTRTRD 27
                689999**************98765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00032
                 -SEEEEEECTTTTHHHHHTT...SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC. CS
        cobW  83 ldviliEttGlaePapvaft...eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeea 157
                  + i+i t+G+      + t   e++l +  ++d+v+++vDa++     +++  k  +  ++a +lv nKtD ld ++
  EHT99547.1  50 REFIVIDTGGIDGTEDGVETrmaEQSLLAIEEADVVLFMVDARAGMMPADQQIAKHLRARQKATFLVANKTDGLDPDQ 127
                 46899999997666655222346999999*************88866666666666667789**********998774 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.7
                 EEEESTTCCHHHHHHHHH.C CS
        cobW   4 vltGflGsGKTtLlnhll.e 22 
                  ++G +  GK+tL n++l e
  EHT99547.1 209 AIVGRPNVGKSTLTNRILgE 228
                 57888899********9943 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.0011
                 T-SEEEEEECTTTTHHHH..HTT....SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHH CS
        cobW  82 rldviliEttGlaePapv..aft....eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeealleklee 164
                 + +++li t G+ +   +  +++     ++l++   +++v+ v+Da++  ++++ +   +      + ++v+nK+D l++e   ++++e
  EHT99547.1 252 DREYVLIDTAGVRKRGKItdTVEkfsvIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVR-DEVKE 339
                 678999999998888877564445656777788888999999****9988777777788888889999***********9944.56655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.003       1.6      13      35 ..       4      26 ..       3      42 .. 0.92
   2 ?   -1.9   0.0       8.4   4.4e+03       8      30 ..     135     157 ..     132     173 .. 0.89
   3 !   10.2   0.0    0.0015      0.79      13      36 ..     207     230 ..     205     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.003
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                +va+vG+   GKStL++ l++  
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTRTR 26
                69***************999865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 8.4
                 EETTSEEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkl 30 
                 l  ge++ai  + G G ++Ll++
  EHT99547.1 135 LGLGEIYAIAASHGRGVTSLLET 157
                 6789**************99975 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0015
                 EEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllk 36 
                 k+aivG+   GKStL + ++g+ +
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGEDR 230
                 689*****************9976 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.004       2.1       4      31 ..       4      33 ..       1      96 [. 0.84
   2 ?   -1.5   0.0       3.3   1.8e+03     143     171 ..      62      89 ..      48     114 .. 0.71
   3 !   10.7   0.0   0.00059      0.31       3      33 ..     206     238 ..     204     297 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.004
      AAA_24  4 kiliyGpsgiGKTtlakel..gpkplfidt 31
                 ++++G + +GK+tl ++l  + ++l+ d+
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLtrTRDALVADF 33
                689****************88888888876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.3
      AAA_24 143 akytrlepklgkktanelkeevDlvlran 171
                 ++ +++e+ + +++  ++ ee+D+vl++ 
  EHT99547.1  62 GTEDGVETRMAEQSLLAI-EEADVVLFMV 89 
                 345678888888866655.5689999975 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00059
      AAA_24   3 lkiliyGpsgiGKTtlakel..gpkplfidtek 33 
                 +k++i+G + +GK+tl +++  ++++++ d+ +
  EHT99547.1 206 IKLAIVGRPNVGKSTLTNRIlgEDRVVVYDMPG 238
                 799*****************9888888887655 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0068       3.6      36      59 ..       3      26 ..       1      32 [. 0.86
   2 !   11.6   0.0   0.00026      0.14      37     126 ..     207     296 ..     198     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0068
        TniB 36 pnlllvGdsnnGKtmivekFarlh 59
                p + lvG++n+GK++++++ +r++
  EHT99547.1  3 PVVALVGRPNVGKSTLFNRLTRTR 26
                7789**************988765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00026
        TniB  37 nlllvGdsnnGKtmivekFarlhp.pekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleq.qvlrllrelkvrvLiiD 126
                 +l +vG++n+GK+++ ++   +++    d   ++++ +++ +     e  l +   + ++++ k +++v+k+   ++l+ +++ +v +L+iD
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGEDRvVVYDMPGTTRDSIYIPMERDDREYVLIDT--AGVRKRGKITDTVEKFSViKTLQAIEDANVVMLVID 296
                 689****************9666515679999999*9**999988888887776..7899999999999998753789999999*******9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0024       1.3       8      30 ..       5      27 ..       3     116 .. 0.88
   2 !    8.8   0.0    0.0035       1.9       8      54 ..     208     242 ..     207     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0024
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                ++++G + +GK+tl +rl+++ d
  EHT99547.1  5 VALVGRPNVGKSTLFNRLTRTRD 27
                689****************9975 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0035
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstssk 54 
                 l+++G + +GK+tl +r+l ++           +vv +++p+ t ++
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGED-----------RVVVYDMPGTT-RD 242
                 689***************9974...........67777776666.33 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00015     0.078       4      86 ..       3      92 ..       1     107 [. 0.68
   2 ?    5.1   0.0     0.027        14       7      84 ..     209     287 ..     205     378 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                -EEEEE-STTSSHHHHHHHHHHS..S---B---SS-EEETTG...GGTT-SEEEETT....-GCCSHHHHHH.HHHHGGEEEEEEEEETT CS
       SRPRB  4 pavllvGlsdsGKTslftrLttd..svkktvtSqessaalkvksekgskltliDfPG....heklrqkllek.lkaksslkglvfvvDSt 86
                p v lvG  + GK +lf+rLt    +       +     +   + +g ++ +iD  G    ++ + +++ e+ l+a +++  ++f+vD+ 
  EHT99547.1  3 PVVALVGRPNVGKSTLFNRLTRTrdALVADFPGLTRDRKYGRAEVEGREFIVIDTGGidgtEDGVETRMAEQsLLAIEEADVVLFMVDAR 92
                6799****************9752233333333333333333788999999999998333334566677665134455588889999975 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.027
                 EEE-STTSSHHHHHHHHHHS.S---B---S..S-EEETTG......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB   7 llvGlsdsGKTslftrLttd.svkktvtSq..essaalkv...ksekgskltliDfPGheklrqklleklkaksslkglvfvvD 84 
                  +vG  + GK +l +r++ +  v    +      s    +    ++++ +  liD  G  k r k+++++ + s +k+l  + D
  EHT99547.1 209 AIVGRPNVGKSTLTNRILGEdRVVVYDMPGttRDS----IyipMERDDREYVLIDTAGVRK-RGKITDTVEKFSVIKTLQAIED 287
                 699************98866333322232211222....22346889999******99655.9999999888888888765555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.1   2.2e+03       3      23 ..       4      24 ..       3      28 .. 0.87
   2 ?    5.2   0.0     0.027        14      78     152 ..      44     122 ..      34     127 .. 0.77
   3 !    9.6   0.0    0.0013      0.67      81     127 ..     250     301 ..     237     321 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.1
                EEEEEESTTSSHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaa 23
                v++lvG   +GK t   +L +
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTR 24
                7899**********9999976 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
                 HHHHTTSSEEEEEE--SSTTHHHHHHHHHHHHHHH..SSSEEEEEEETTBHTHHHH..HHHHHHHHSSCSEEEEESTTS CS
       SRP54  78 kakeekidvvlvDTaGrlqndkelmeelkkikkvv..kpdevllvldattgqeavk..qakaFkeavgitgviltklDg 152
                 +a+ e+ +++++DT G   +++ + + +++ +  +  ++d vl+ +da +g   +    ak+ + + + t ++  k Dg
  EHT99547.1  44 RAEVEGREFIVIDTGGIDGTEDGVETRMAEQSLLAieEADVVLFMVDARAGMMPADqqIAKHLRARQKATFLVANKTDG 122
                 56778899************99999988776544444999999*****9998655422577777777777777777776 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0013
                 HTTSSEEEEEE--.....SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHT CS
       SRP54  81 eekidvvlvDTaG.....rlqndkelmeelkkikkvvkpdevllvldattgq 127
                 +++ ++vl+DTaG     +     e ++ +k+++ + +++ v+lv+da +g 
  EHT99547.1 250 RDDREYVLIDTAGvrkrgKITDTVEKFSVIKTLQAIEDANVVMLVIDARAGI 301
                 456789******94221133345566777777777789999*******9885 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0023       1.2      22      53 ..       4      35 ..       2      38 .. 0.88
   2 !    6.4   0.0    0.0083       4.4      23      43 ..     208     228 ..     197     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
                EEEEEESTTSSHHHHHHHHCCSHCCCCCCBTE CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksdevegrFds 53
                vvalvG++ vGK+tl++   +  d +   F++
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPG 35
                79****************99998888888875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0083
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 +a+vG++ vGK+tl + il +
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGE 228
                 79**************99876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.011       5.6       2      20 ..       6      24 ..       5      39 .. 0.90
   2 !    7.9   0.0    0.0075       3.9       2      19 ..     209     226 ..     208     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.011
  RNA_helicase  2 wlyGpsgeGKStlakeLak 20
                   l+G++++GKStl ++L++
    EHT99547.1  6 ALVGRPNVGKSTLFNRLTR 24
                  689************9986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0075
  RNA_helicase   2 wlyGpsgeGKStlakeLa 19 
                    ++G++++GKStl++++ 
    EHT99547.1 209 AIVGRPNVGKSTLTNRIL 226
                   589************954 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.013       7.1       5     138 ..       6     155 ..       3     159 .. 0.69
   2 ?    3.5   0.0       0.1        55       3      24 ..     207     228 ..     206     240 .. 0.85
   3 ?    2.3   0.0      0.25   1.3e+02      62     141 ..     286     371 ..     255     373 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
   PduV-EutP   5 lliGkvgsGKttLtqalkg.............eelkYkktqaiefsdeviDtPG.....eylenrklysalivtsaeadvialvqdateeesvfppgfa 85 
                  l+G+ ++GK tL ++l+              ++ kY +      +  viDt G     + +e r   ++l ++  eadv+ +++da + +    +++a
  EHT99547.1   6 ALVGRPNVGKSTLFNRLTRtrdalvadfpgltRDRKYGRAEVEGREFIVIDTGGidgteDGVETRMAEQSLLAI-EEADVVLFMVDARAGMMPADQQIA 103
                 57888888888888888777777777777776666666655433333345555533333778888888887765.699999999999999999999988 PP

   PduV-EutP  86 svf...nkeviGiitkidlaedeenieaveelLksaGaekifevsavekegieell 138
                 + +   +k +  +  k+d  + +++i      + s G  +i+ + a +  g+ +ll
  EHT99547.1 104 KHLrarQKATFLVANKTDGLDPDQAI----VDFYSLGLGEIYAIAASHGRGVTSLL 155
                 87733347777788888888333333....35788899999999999999988876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 k+ ++G+ ++GK tLt+++ ge
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRILGE 228
                 56789************99876 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.25
   PduV-EutP  62 aeadvialvqdate...eesvfppgfasvfnkeviGiitkidlaedeenieavee....lLksaGaekifevsavekegieellkyl 141
                  +a+v++lv da +    + +   gf     + ++ ++ k d  ++e   + v+e    +L     +++  +sa++ +g+ +l++ +
  EHT99547.1 286 EDANVVMLVIDARAgisDQDLSLLGFILNSGRSLVIVVNKWDGLSQE-VRDEVKEtldfRLGFIDFARVHFISALHGSGVGNLFESV 371
                 58999999999876221334444577777789999999999987333.333444401114555667889999999999999998765 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.61   3.2e+02       2      20 ..       8      26 ..       7      32 .. 0.85
   2 ?    0.3   0.0      0.94   4.9e+02       1      16 [.     210     225 ..     210     227 .. 0.89
   3 !   10.6   0.0   0.00066      0.35      86     183 ..     248     343 ..     230     389 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.61
  ATP_bind_1  2 vGpaGsGKttfvgalseil 20
                vG + +GK+t+ ++l+ ++
  EHT99547.1  8 VGRPNVGKSTLFNRLTRTR 26
                79999********998776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.94
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 +vG + +GK+t+++++
  EHT99547.1 210 IVGRPNVGKSTLTNRI 225
                 799*********9875 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00066
  ATP_bind_1  86 lekeeddyllfDtPGQielfthseslak..iveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffe 181
                 +e+ +++y+l+Dt G  +  ++ +   k  ++++L+  e a vv+ ++D++   +     ++ ls l  +l+ +   v+v+nk D+l+++ + e++   
  EHT99547.1 248 MERDDREYVLIDTAGVRKRGKITDTVEKfsVIKTLQAiEDANVVMLVIDARAGIS-----DQDLSLLGFILNSGRSLVIVVNKWDGLSQEVRDEVKETL 341
                 4444679********88766555554431179*****999999999999988666.....344666788999****************98666666555 PP

  ATP_bind_1 182 dv 183
                 d+
  EHT99547.1 342 DF 343
                 54 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0      0.01       5.5       2      21 ..       5      24 ..       4      37 .. 0.88
   2 !    7.0   0.0    0.0098       5.2       2      21 ..     208     227 ..     207     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.01
                EEEE--TTSSHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvle 21
                v++ G+p vGK+Tl++++++
  EHT99547.1  5 VALVGRPNVGKSTLFNRLTR 24
                7899***********99876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0098
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 ++i G+p vGK+Tl +++l 
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILG 227
                 7899************9975 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.013       6.6      31      51 ..       4      24 ..       2      29 .. 0.90
   2 ?    3.7   0.0     0.049        26      31      49 ..     207     225 ..     201     230 .. 0.87
   3 ?    2.0   0.0      0.16        84     171     233 ..     320     379 ..     283     395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
                EEEEEE-TTSSHHHHHHHHHH CS
        MeaB 31 vvGltGvPGaGkstlvealgl 51
                vv l G P +Gkstl ++l+ 
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTR 24
                7899*************9985 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.049
                 EEEEEE-TTSSHHHHHHHH CS
        MeaB  31 vvGltGvPGaGkstlveal 49 
                 ++ + G P +Gkstl++++
  EHT99547.1 207 KLAIVGRPNVGKSTLTNRI 225
                 57799**********9987 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.16
                 EEEEE---..HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHH CS
        MeaB 171 iivvnkaD..kkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlk 233
                 +ivvnk D      ++++ e++  l+    + +   ++v  +sa++g G+ +l++ ++e  +  +
  EHT99547.1 320 VIVVNKWDglS---QEVRDEVKETLDFRLGFID--FARVHFISALHGSGVGNLFESVTEAYDCST 379
                 67888888432...2333444444444333322..5788999*************9999777655 PP

>> Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.086        45      60      81 ..      71      92 ..      61     120 .. 0.73
   2 ?    0.3   0.0       1.7   8.8e+02      57      80 ..      98     121 ..      93     154 .. 0.73
   3 !    8.9   0.0    0.0035       1.8      61     106 ..     278     324 ..     264     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.086
                     HHHHHHHHHHH-SEEEEEE-TT CS
  Nuc_deoxyri_tr2 60 qvewelealekAdvvvfvfdge 81
                       e+ l a+e+Advv+f++d +
       EHT99547.1 71 MAEQSLLAIEEADVVLFMVDAR 92
                     557778899*********9983 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.7
                      ..HHHHHHHHHHHH-SEEEEEE-T CS
  Nuc_deoxyri_tr2  57 freqvewelealekAdvvvfvfdg 80 
                       ++q+  +l+a +kA+ +v+  ++
       EHT99547.1  98 ADQQIAKHLRARQKATFLVANKTD 121
                      6899************99987554 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0035
                      HHHHHHHHHH-SEEEEEE-TT--.-HHHHHHHHHHTTSS-EEEEE-T CS
  Nuc_deoxyri_tr2  61 vewelealekAdvvvfvfdgeds.atrslvElglaaakgkkvvlvpk 106
                      v   l+a+e+A+vv+ v+d +   +   l  lg++ ++g+ +v+v++
       EHT99547.1 278 VIKTLQAIEDANVVMLVIDARAGiSDQDLSLLGFILNSGRSLVIVVN 324
                      566799**************44455567899*********9888865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0      0.01       5.4       1      21 [.       5      25 ..       5     110 .. 0.85
   2 ?    5.8   0.0     0.036        19       3      18 ..     210     225 ..     208     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.01
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                ++l G p vGK+tl ++L + 
  EHT99547.1  5 VALVGRPNVGKSTLFNRLTRT 25
                6899************99765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.036
      AAA_18   3 ltGtpGvGKttlakeL 18 
                 + G p vGK+tl++++
  EHT99547.1 210 IVGRPNVGKSTLTNRI 225
                 89**********9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0064       3.4       1      27 [.       4      30 ..       4     117 .. 0.86
   2 ?    5.0   0.0     0.049        26       4      29 ..     210     235 ..     208     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0064
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavl 27
                +v lvG p +GKstl  rl + ++a +
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTRTRDALV 30
                799****************98877544 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.049
      AAA_33   4 lvGlpGsGKstlaerllkklgavlls 29 
                 +vG p +GKstl  r+l +  +v+ +
  EHT99547.1 210 IVGRPNVGKSTLTNRILGEDRVVVYD 235
                 7999************9988877765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.031        16      35      55 ..       4      24 ..       3     116 .. 0.66
   2 ?    2.3   0.0      0.21   1.1e+02      37      50 ..     209     222 ..     205     226 .. 0.89
   3 ?    3.3   0.2       0.1        54     102     154 ..     254     301 ..     231     307 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.031
      AAA_25 35 lallaGapgtGKttlaldlal 55
                +++l+G+p +GK+tl   l  
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTR 24
                6899**********9766655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.21
      AAA_25  37 llaGapgtGKttla 50 
                 +++G+p +GK+tl+
  EHT99547.1 209 AIVGRPNVGKSTLT 222
                 689*********98 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.1
      AAA_25 102 rllvldlagv.eslpLfakdrggtlltadvdaleaaieeveg..vrlvviDplsra 154
                 +  ++d agv ++  +++      +++ +   ++++++++e+  v+++viD  + +
  EHT99547.1 254 EYVLIDTAGVrKRGKITD------TVEKF--SVIKTLQAIEDanVVMLVIDARAGI 301
                 444455556533333322......23333..4677777777777*******98765 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0036       1.9       6      29 ..       5      28 ..       2      48 .. 0.88
   2 ?    1.3   0.0      0.53   2.8e+02       8      22 ..     210     224 ..     206     256 .. 0.87
   3 ?   -1.4   0.0       3.6   1.9e+03       4      33 ..     352     381 ..     351     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0036
  Ploopntkinase3  6 iylvGqPGaGkstlmaeltkgfdr 29
                    + lvG P  Gkstl   lt++ d 
      EHT99547.1  5 VALVGRPNVGKSTLFNRLTRTRDA 28
                    679****************98765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.53
  Ploopntkinase3   8 lvGqPGaGkstlmae 22 
                     +vG P  Gkstl   
      EHT99547.1 210 IVGRPNVGKSTLTNR 224
                     8**********9765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.6
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfdrskve 33 
                     r+ ++    G+G  +l  ++t+++d s+ +
      EHT99547.1 352 RVHFISALHGSGVGNLFESVTEAYDCSTKR 381
                     666777788***************988765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.037        19      25      39 ..       5      19 ..       2      24 .. 0.88
   2 ?    5.5   0.0     0.026        14      14      38 ..     201     221 ..     195     225 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.037
      AAA_29 25 tlltGpsGsGKSTll 39
                + l+G+  +GKSTl+
  EHT99547.1  5 VALVGRPNVGKSTLF 19
                5799*********97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.026
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTl 38 
                  +t++i+      ++G+  +GKSTl
  EHT99547.1 201 PTTLPIK----LAIVGRPNVGKSTL 221
                 4555555....789**********9 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0     0.002       1.1       2      55 ..       3      75 ..       2      84 .. 0.86
   2 ?    1.5   0.0      0.32   1.7e+02       6      21 ..     210     225 ..     207     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.002
                .EEEEE--TTSSHHHHHHHHHHHHHH...................TT--EEEE-THHHH.TTSSS--GGGHHH CS
       KTI12  2 pLvvltGlPssGKstrakeLakalee...................ekrsvvviddeslgiekdsykdsakeka 55
                p v l G P +GKst+ ++L ++  +                   e+r+ +vid+  + +++d +++  +e++
  EHT99547.1  3 PVVALVGRPNVGKSTLFNRLTRTRDAlvadfpgltrdrkygraevEGREFIVIDTGGIDGTEDGVETRMAEQS 75
                8999****************98877777799999999999999999999999999999988888887777765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.32
                 EE--TTSSHHHHHHHH CS
       KTI12   6 ltGlPssGKstrakeL 21 
                 + G P +GKst+++++
  EHT99547.1 210 IVGRPNVGKSTLTNRI 225
                 78*********99876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.033        17      25      49 ..       3      25 ..       1     125 [. 0.87
   2 ?    5.0   0.0     0.054        28      28      63 ..     209     243 ..     205     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.033
      AAA_16 25 elvllsGesGvGKsslvrellrale 49
                ++v l+G + vGKs+l ++l r  +
  EHT99547.1  3 PVVALVGRPNVGKSTLFNRLTR--T 25
                5799*************99996..2 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.054
      AAA_16  28 llsGesGvGKsslvrellralekdggif..lrgkcdql 63 
                  ++G + vGKs+l +++l    +d++++  + g+++++
  EHT99547.1 209 AIVGRPNVGKSTLTNRIL---GEDRVVVydMPGTTRDS 243
                 68999*********9998...45555555666666666 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.045        24       8      30 ..       6      28 ..       4      68 .. 0.80
   2 ?    5.4   0.0     0.018       9.6       5      68 ..     206     271 ..     202     282 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.045
                EEEEBTTSSCCCCCCTTSSSS-- CS
      Septin  8 mvvGesglGkttlintlfetdli 30
                 +vG+  +Gk+tl+n l +t++ 
  EHT99547.1  6 ALVGRPNVGKSTLFNRLTRTRDA 28
                589**************998765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.018
                 EEEEEEEBTTSSCCCCCCTTSSSS------------.------S-E.EEEEEEEETTCEEEEEEEE CS
      Septin   5 ftlmvvGesglGkttlintlfetdlieeekleease.kkkktveik.kkkvvieedgvklnltviD 68 
                 + l +vG+  +Gk+tl n ++ +d +    ++ ++  ++   +e + ++ v+i+  gv+ +  + D
  EHT99547.1 206 IKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRdSIYIPMERDdREYVLIDTAGVRKRGKITD 271
                 7899***************99988766654544433255555555433444555556665555555 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00072      0.38       5      58 .]      74     121 ..      71     121 .. 0.78
   2 ?    0.2   0.2       1.2   6.4e+02      48      58 .]     317     327 ..     280     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00072
        NOG1   5 qAiaALkhladavlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 q+++A+++ ad+vlF++D+     ++ ++Q  + ++++++  +k  + v+nK+D
  EHT99547.1  74 QSLLAIEE-ADVVLFMVDARAG-MMPADQQ--IAKHLRAR--QKATFLVANKTD 121
                 77888887.79*******9843.4566666..57999999..478999999998 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
        NOG1  48 kpvivvlnKiD 58 
                 + +++v+nK D
  EHT99547.1 317 RSLVIVVNKWD 327
                 67899999988 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.033        17       2      22 ..       5      25 ..       4      39 .. 0.84
   2 ?   -2.1   0.0       7.6     4e+03      71      86 ..      48      63 ..      35     116 .. 0.72
   3 ?    3.6   0.0      0.14        72       2      22 ..     208     228 ..     207     243 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.033
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                ++++G +  GK+tl ++L+++
  EHT99547.1  5 VALVGRPNVGKSTLFNRLTRT 25
                7999**************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.6
      AAA_28 71 aankvlfcDrglldtl 86
                ++++++++D+g +d +
  EHT99547.1 48 EGREFIVIDTGGIDGT 63
                6778888888888764 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.14
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                  +i+G +  GK+tl++++  +
  EHT99547.1 208 LAIVGRPNVGKSTLTNRILGE 228
                 6899***********987644 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.08        42       4      26 ..       4      26 ..       2      46 .. 0.86
   2 ?    5.4   0.0     0.034        18       6      43 ..     209     253 ..     206     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.08
      AAA_14  4 ilvitGaRrvGKTtllkqlikel 26
                +++++G   vGK+tl ++l +++
  EHT99547.1  4 VVALVGRPNVGKSTLFNRLTRTR 26
                78999999********9998765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.034
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd 43 
                 +i+G   vGK+tl ++++ e          + ++ +yi +++++ 
  EHT99547.1 209 AIVGRPNVGKSTLTNRILGEDRvvvydmpGTTRDSIYIPMERDDR 253
                 7889999*********99888878888776677788888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 3553.77
//
Query:       EHT99548.1  [L=393]
Description: protein assembly complex, lipoprotein component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-67  225.4  15.7    3.4e-53  180.7   5.9    2.8  3  PQQ_2            PQQ-like domain
    1.9e-37  125.4  10.6    1.2e-07   31.3   0.0    8.6  9  PQQ              PQQ enzyme repeat
    2.2e-37  126.6  18.1    9.1e-06   26.0   0.0    8.6  8  PQQ_3            PQQ-like domain
     0.0037   16.6   0.0      0.056   12.8   0.0    2.2  1  WD40_like        WD40-like domain
  ------ inclusion threshold ------
      0.013   15.9   0.1       0.28   11.6   0.1    2.5  2  RAMA             Restriction Enzyme Adenine Methylase Associa
       0.19   11.2   0.0        0.7    9.3   0.0    1.8  2  Glyco_hydro_98C  Glycosyl hydrolase family 98 C-terminal doma


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   3.1e-08   9.4e-05      14      67 ..      45     100 ..      37     105 .. 0.82
   2 !  180.7   5.9   1.1e-56   3.4e-53       3     237 .]      79     320 ..      77     320 .. 0.95
   3 !   43.6   0.1   8.5e-15   2.5e-11      71     188 ..     289     391 ..     287     393 .] 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.1e-08
       PQQ_2  14 aelWrvdlarp....lgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegp 67 
                 +++W+++++++     ++ +  ++ ++gt+++a+++g + aldaa+Gk++W+++l+++
  EHT99548.1  45 KTVWSTGVGDGigdfYSNLH--PTWQDGTVYAADRFGIVKALDAADGKEKWKVDLSEK 100
                 68899877554455456666..888*****************************9886 PP

  == domain 2  score: 180.7 bits;  conditional E-value: 1.1e-56
       PQQ_2   3 gvvsaldaatGaelWrvdlarp...........lgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqlia 90 
                 g v+aldaa+G+e W+vdl ++           l+gg+  +v sg++l++++++g+++al++++G+++W++++ g+++++p v++g v+ ++s+g l++
  EHT99548.1  79 GIVKALDAADGKEKWKVDLSEKtgffsknlsamLSGGI--TV-SGDRLYIGSERGQVYALNTSDGSIVWQAKAAGEALSRPVVSDGLVLIHTSNGMLQG 174
                 789****************6644566667777799999..99.******************************************************** PP

       PQQ_2  91 ldaedGkrlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaegtVyassgqgrllald 189
                 ld+++G ++W++ ++  + ++lr+ ++p+va + ++vg+ +g++ a+    G+++W++ +++p+g++e++r+ d++ +p++++g Vya +++g+l ald
  EHT99548.1 175 LDQATGAVKWTVNLDM-PALSLRGESAPSVAFGGAIVGGDNGRVSAVIMNQGQLIWQQRISQPSGATEIDRLSDVDTTPIIVNGVVYALAYNGNLSALD 272
                 ***********99988.**************999999999*********************************************************** PP

       PQQ_2 190 latgrrlwskeissinglpildgdllyvvsa.gelialdratGavlWkt 237
                 l++g+ lw++ei++++   i+d++ +y+v++ +++ial+   G  +W++
  EHT99548.1 273 LRSGQILWKREIGGVKD-LIVDAGRIYLVDQdDRVIALNADGGVAIWRQ 320
                 *****99**********.************77**************985 PP

  == domain 3  score: 43.6 bits;  conditional E-value: 8.5e-15
       PQQ_2  71 aplvaegrvvvvasdgqlialdaedGkrlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerel.aaprgtselsrvgdisgr 168
                 +  v+ gr+++v++d+++ial+a+ G   W+ q++      +r  +sp+++ +++vvg+  g l+ l+ +dG+ + +++l +++            + +
  EHT99548.1 289 DLIVDAGRIYLVDQDDRVIALNADGGVAIWR-QSEL----LHRNLTSPVLYNGYIVVGDGEGYLHWLNTTDGRFVAQQKLdSSGF-----------QTE 371
                 6789***************************.7777....458888**********************************88888...........567 PP

       PQQ_2 169 pvvaegtVyassgqgrllal 188
                 pvva++++++ s++g++ a+
  EHT99548.1 372 PVVASDKLLIQSKDGEVYAI 391
                 99999999999998888776 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.5   7.5e+03      21      32 ..      45      56 ..      45      58 .. 0.79
   2 !   20.4   0.1   1.2e-07   0.00035       1      29 [.      70      98 ..      69     104 .. 0.88
   3 !   31.3   0.0   4.1e-11   1.2e-07       1      37 [.     121     157 ..     121     158 .. 0.95
   4 !   19.0   0.0   3.2e-07   0.00095       1      35 [.     161     195 ..     161     197 .. 0.92
   5 !   14.1   0.0   1.1e-05     0.033       2      36 ..     207     241 ..     206     243 .. 0.90
   6 !   29.6   0.1   1.4e-10   4.1e-07       1      33 [.     257     289 ..     257     294 .. 0.92
   7 !    4.8   0.0    0.0098        29       1      20 [.     295     314 ..     295     327 .. 0.81
   8 ?    2.4   0.1     0.057   1.7e+02       3      23 ..     338     358 ..     335     365 .. 0.82
   9 ?    1.9   0.0     0.083   2.5e+02       3      15 ..     379     391 ..     377     393 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
                CEEEEEESSSCG CS
         PQQ 21 kvlWrfktggpv 32
                k +W++ +g+ +
  EHT99548.1 45 KTVWSTGVGDGI 56
                679999998865 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.2e-07
                TEEEEEETTSEEEEEETTTCCEEEEEESS CS
         PQQ  1 gvvylgsadGylyAlDadTGkvlWrfktg 29
                g+vy++++ G + AlDa++Gk++W+++++
  EHT99548.1 70 GTVYAADRFGIVKALDAADGKEKWKVDLS 98
                68888888889**************9987 PP

  == domain 3  score: 31.3 bits;  conditional E-value: 4.1e-11
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvlslpi 37 
                 +++y+gs  G++yAl+ ++G ++W+ k+ g+ ls+p+
  EHT99548.1 121 DRLYIGSERGQVYALNTSDGSIVWQAKAAGEALSRPV 157
                 578********************************98 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 3.2e-07
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGSSE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvlsl 35 
                 g v +++ +G l  lD +TG v+W+++++ p lsl
  EHT99548.1 161 GLVLIHTSNGMLQGLDQATGAVKWTVNLDMPALSL 195
                 57899***********************9998875 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 1.1e-05
                 EEEEEETTSEEEEEETTTCCEEEEEESSSCGSSES CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfktggpvlslp 36 
                 + ++g ++G++ A+ ++ G+++W+ ++++p  ++ 
  EHT99548.1 207 GAIVGGDNGRVSAVIMNQGQLIWQQRISQPSGATE 241
                 67899************************998876 PP

  == domain 6  score: 29.6 bits;  conditional E-value: 1.4e-10
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGS CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvl 33 
                 gvvy+  ++G+l AlD+++G++lW+ ++gg+ +
  EHT99548.1 257 GVVYALAYNGNLSALDLRSGQILWKREIGGVKD 289
                 799**************************9987 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.0098
                 TEEEEEETTSEEEEEETTTC CS
         PQQ   1 gvvylgsadGylyAlDadTG 20 
                 g++yl + d ++ Al+ad G
  EHT99548.1 295 GRIYLVDQDDRVIALNADGG 314
                 789***7777******8755 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.057
                 EEEEETTSEEEEEETTTCCEE CS
         PQQ   3 vylgsadGylyAlDadTGkvl 23 
                 +++g+  Gyl  l+ ++G+ +
  EHT99548.1 338 IVVGDGEGYLHWLNTTDGRFV 358
                 6778999***********876 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.083
                 EEEEETTSEEEEE CS
         PQQ   3 vylgsadGylyAl 15 
                 + + s+dG +yA+
  EHT99548.1 379 LLIQSKDGEVYAI 391
                 66889*******8 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.4     3e-05     0.089       2      40 .]      45      88 ..      45      88 .. 0.82
   2 !   26.0   0.0     3e-09   9.1e-06       1      39 [.      89     138 ..      89     139 .. 0.82
   3 !   23.5   0.0   1.8e-08   5.5e-05       1      40 []     140     179 ..     140     179 .. 0.96
   4 !    8.8   0.3    0.0008       2.4       1      36 [.     180     220 ..     180     220 .. 0.78
   5 !   22.7   0.0   3.4e-08    0.0001       1      40 []     225     275 ..     225     275 .. 0.86
   6 !   19.8   0.1   2.6e-07   0.00079       1      39 [.     276     312 ..     276     313 .. 0.94
   7 !   11.3   0.2   0.00013      0.38       5      39 ..     318     353 ..     314     359 .. 0.78
   8 !    5.9   0.0    0.0063        19      12      36 ..     367     391 ..     360     393 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
       PQQ_3  2 evlWsvqlpgpvnssp......avdgglvyvgtgdGtlyAlDaet 40
                +++Ws+++++ + +        +  +g+vy+++  G + AlDa++
  EHT99548.1 45 KTVWSTGVGDGI-GDFysnlhpTWQDGTVYAADRFGIVKALDAAD 88
                579***999744.334455588*********************86 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 3e-09
       PQQ_3   1 GevlWsvqlpgpvnssp.............avdgglvyvgtgdGtlyAlDae 39 
                 G+++W+v+l ++++                +v+g+++y+g++ G +yAl++ 
  EHT99548.1  89 GKEKWKVDLSEKTG--FfsknlsamlsggiTVSGDRLYIGSERGQVYALNTS 138
                 99*****8888543..22358888888888*******************975 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 1.8e-08
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvyvgtgdGtlyAlDaet 40 
                 G ++W+ +  g++ s p+v++glv + t++G l  lD +t
  EHT99548.1 140 GSIVWQAKAAGEALSRPVVSDGLVLIHTSNGMLQGLDQAT 179
                 889*********************************9876 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0008
       PQQ_3   1 GevlWsvql..pg...pvnsspavdgglvyvgtgdGtlyAl 36 
                 G v+W+v+l  p+   ++ s+p v+ g   vg+++G++ A+
  EHT99548.1 180 GAVKWTVNLdmPAlslRGESAPSVAFGGAIVGGDNGRVSAV 220
                 899****5533667789999998887777788889**9986 PP

  == domain 5  score: 22.7 bits;  conditional E-value: 3.4e-08
       PQQ_3   1 GevlWsv...........qlpgpvnsspavdgglvyvgtgdGtlyAlDaet 40 
                 G+++W++           +  ++v ++p +++g+vy+ +++G+l AlD ++
  EHT99548.1 225 GQLIWQQrisqpsgateiDRLSDVDTTPIIVNGVVYALAYNGNLSALDLRS 275
                 8999***888888888664445888999********************986 PP

  == domain 6  score: 19.8 bits;  conditional E-value: 2.6e-07
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvyvgtgdGtlyAlDae 39 
                 G++lW+++++g v   + vd g++y ++ d ++ Al+a+
  EHT99548.1 276 GQILWKREIGG-V-KDLIVDAGRIYLVDQDDRVIALNAD 312
                 99********6.5.789********************96 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 0.00013
       PQQ_3   5 Wsv.qlpgpvnsspavdgglvyvgtgdGtlyAlDae 39 
                 W++ +l  +  +sp++++g+++vg+g G l+ l+++
  EHT99548.1 318 WRQsELLHRNLTSPVLYNGYIVVGDGEGYLHWLNTT 353
                 6665554466699*************8888877765 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.0063
       PQQ_3  12 pvnsspavdgglvyvgtgdGtlyAl 36 
                   ++ p+v+ +++ + + dG +yA+
  EHT99548.1 367 GFQTEPVVASDKLLIQSKDGEVYAI 391
                 566889******************8 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.9e-05     0.056      88     224 ..     116     353 ..     107     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
   WD40_like  88 vkviddklliGtnkGsiyvfskdlqleevllgqsseIkeikie........................................................ 130
                 ++v +d+l+iG+++G++y ++      +v   + +  + ++                                                          
  EHT99548.1 116 ITVSGDRLYIGSERGQVYALNTS-DGSIVWQAK-AAGEALSRPvvsdglvlihtsngmlqgldqatgavkwtvnldmpalslrgesapsvafggaivgg 212
                 67888999999999999998876.333333332.22233333244568899999999999999999999999999999999999999999999999999 PP

   WD40_like 131 ...........................................nnkiysLses.afivfdlfsqnieykisvkdik.......tfeii.enkdilligt 177
                                                            n+++y+L+ + ++ + dl s +i+ k+++ ++k        +  + ++  ++++  
  EHT99548.1 213 dngrvsavimnqgqliwqqrisqpsgateidrlsdvdttpiivNGVVYALAYNgNLSALDLRSGQILWKREIGGVKdlivdagRIYLVdQDDRVIALNA 311
                 999999999999999999999999999999999*****************976378899*******999997665511111114455645666999*** PP

   WD40_like 178 egeililkknvilqkidvegkPecillvddylivGgsfkyllliNik 224
                 +g + i ++ ++l++  +       +l ++y++vG    yl  +N+ 
  EHT99548.1 312 DGGVAIWRQSELLHRNLTSP-----VLYNGYIVVGDGEGYLHWLNTT 353
                 ***************98887.....6889******999999999987 PP

>> RAMA  Restriction Enzyme Adenine Methylase Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.4e-05      0.28      26      72 ..     107     149 ..      83     178 .. 0.75
   2 ?    1.5   0.0      0.13     4e+02      47      74 ..     214     243 ..     204     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.4e-05
        RAMA  26 tlkdLleagllepGekll.ieykgrthkAdlladGkIkgqefgspsaa 72 
                  l+ +l+ g+   G++l+  +++g+ + A  ++dG+I++q+     aa
  EHT99548.1 107 NLSAMLSGGITVSGDRLYiGSERGQVY-ALNTSDGSIVWQA----KAA 149
                 689999************99999*966.999*******997....333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
        RAMA  47 kgrthkAdlladGkIkgqe.fgspsaaa..k 74 
                 +gr  +A+++ +G++ +q+  ++ps a    
  EHT99548.1 214 NGR-VSAVIMNQGQLIWQQrISQPSGATeiD 243
                 566.789*********776699999876553 PP

>> Glyco_hydro_98C  Glycosyl hydrolase family 98 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00024       0.7      12     102 ..      47     135 ..      38     152 .. 0.76
   2 ?   -1.4   0.0      0.43   1.3e+03       5      33 ..     326     355 ..     323     376 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00024
  Glyco_hydro_98C  12 lygnftqnGeGnyyvGlysedetsplyttGrygilpvvhekiekekiesilsnaqiklldkn.seelsskvnrkeylnklykkeyeGdiyaq 102
                      +++  + +G G++y  l+   +   +y++ r+gi+ +++    kek +  ls+    +++kn s  ls  +      ++ly     G++ya 
       EHT99548.1  47 VWSTGVGDGIGDFYSNLHPTWQDGTVYAADRFGIVKALDAADGKEKWKVDLSEK-TGFFSKNlSAMLSGGIT--VSGDRLYIGSERGQVYAL 135
                      57677778889************************************9999998.56666663445555444..344667766666666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.43
  Glyco_hydro_98C   5 vaktkallygnftqnGeG.nyyvGlysede 33 
                      ++ t  +ly  +   G+G +y   l++ d 
       EHT99548.1 326 RNLTSPVLYNGYIVVGDGeGYLHWLNTTDG 355
                      5778999**999999999888899998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3083.31
//
Query:       EHT99549.1  [L=205]
Description: uncharacterized DUF2133 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-54  184.9  10.6    1.4e-54  184.7  10.6    1.0  1  TPR_21           Tetratricopeptide repeat-like domain
      1e-06   29.1  12.6     0.0063   17.0   2.7    3.4  3  TPR_19           Tetratricopeptide repeat
    0.00015   21.3   3.3    0.00026   20.5   3.1    1.6  1  TPR_MalT         MalT-like TPR region
    0.00017   22.2   2.9     0.0076   16.9   1.1    2.6  2  TPR_16           Tetratricopeptide repeat
    0.00018   22.1   4.4      0.014   16.2   0.3    3.6  3  TPR_14           Tetratricopeptide repeat
     0.0007   19.5   1.3        2.2    8.6   0.0    3.4  3  TPR_2            Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.4   1.7      0.031   13.7   1.7    1.3  1  T6SS_VasJ        Type VI secretion, EvfE, EvfF, ImpA, BimE, V
      0.089   13.0   0.6       0.19   11.9   0.6    1.7  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
       0.14   12.8   4.5        2.5    8.9   0.3    3.7  3  TPR_6            Tetratricopeptide repeat
       0.18   12.5   5.1         14    6.6   0.6    3.1  3  TPR_4            Tetratricopeptide repeat
        0.7    9.8   7.5         11    5.9   0.4    3.2  3  YfdX             YfdX protein
          2    9.0   5.3         88    3.8   0.4    3.6  3  TPR_17           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7  10.6   9.5e-58   1.4e-54       1     192 [.      15     205 .]      15     205 .] 0.98

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 9.5e-58
      TPR_21   1 KawWkengklilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqL 99 
                 ++++++ngk++++gvv+++++l Gw++w+++++++a++ sa Yq+l++a++ ++ + + ea++++a e+++t Y+alaaL lAk+ v++++l++A++ L
  EHT99549.1  15 RRFFANNGKALAIGVVIGIAALGGWRYWSSHEQDSAKTVSAEYQKLTSAMQVSKPE-TLEAVNTFARENSNT-YGALAALDLAKQYVDSNQLDKAESLL 111
                 69*********************************************999988888.899***********9.************************** PP

      TPR_21 100 ewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleeka.rellqlKlddLa 192
                 ++ l+++kd++l+a+++lRLar++l+++++d+AlktL+++k ++++a va++rG++l+++g+++ Ar+a+++++++ ++ a ++++q+K+++L+
  EHT99549.1 112 QNGLKDTKDANLQAVINLRLARIQLQQNQADAALKTLDGVKGDGWTAIVADIRGEALLSKGDKQGARDAWSKGVESDASPAlKQMMQMKMNNLS 205
                 ********************************************************************************************95 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.7   4.2e-06    0.0063      25      64 ..      88     126 ..      55     129 .. 0.86
   2 !   16.3   2.2   6.8e-06      0.01      24      50 ..     124     150 ..     118     153 .. 0.87
   3 ?    1.4   0.0      0.31   4.6e+02      33      65 ..     166     197 ..     161     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.2e-06
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 a a+l+LA+ ++ ++qld+Ae lL+  +++++d a+++++
  EHT99549.1  88 ALAALDLAKQYVDSNQLDKAESLLQNGLKDTKD-ANLQAV 126
                 56788****************************.887765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6.8e-06
      TPR_19  24 naearllLAeallalgqldeAealLda 50 
                 +a + l+LA+++l+++q d+A ++Ld 
  EHT99549.1 124 QAVINLRLARIQLQQNQADAALKTLDG 150
                 667899*******************96 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.31
      TPR_19  33 eallalgqldeAealLdalpeedpddaryasLl 65 
                 eall+ g+ + A+++ ++  e+d+  +++++ +
  EHT99549.1 166 EALLSKGDKQGARDAWSKGVESDAS-PALKQMM 197
                 7899999999999988888888887.7766655 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   3.1   1.8e-07   0.00026     127     185 ..      93     149 ..      58     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.8e-07
    TPR_MalT 127 lladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetlle 185
                  la+ + + n+L++Ae  lq+G++ +++   + ++ +++ lari+l+q+++++A+++l+
  EHT99549.1  93 DLAKQYVDSNQLDKAESLLQNGLKDTKDA--NLQAVINLRLARIQLQQNQADAALKTLD 149
                 467778999*************8888877..5566677889**************9998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.1   5.1e-06    0.0076       1      57 [.      92     148 ..      92     158 .. 0.93
   2 ?    4.6   0.0     0.036        53      40      56 ..     164     181 ..     163     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.1e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 l+la+ ++++++ d+A+ +l+  lk+ ++  + a   l l+++ l+q+  ++A+  +
  EHT99549.1  92 LDLAKQYVDSNQLDKAESLLQNGLKDTKDANLQAVINLRLARIQLQQNQADAALKTL 148
                 68999***********************************************99655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.036
      TPR_16  40 lgdaalrqgrlaeAa.al 56 
                 +g+a+l +g+ ++A+ a+
  EHT99549.1 164 RGEALLSKGDKQGARdAW 181
                 899***********9777 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   9.2e-06     0.014       3      44 .]      90     134 ..      88     134 .. 0.85
   2 ?    5.9   0.3     0.019        28       5      25 ..     129     149 ..     125     151 .. 0.90
   3 ?    2.8   0.0      0.18   2.7e+02       7      30 ..     164     187 ..     158     199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.2e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd...aeawlllaql 44 
                 a l+la+ +  + ++d+A+ ll+  l++  d    a+++l+la++
  EHT99549.1  90 AALDLAKQYVDSNQLDKAESLLQNGLKDTKDAnlqAVINLRLARI 134
                 679************************776544447788999985 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.019
      TPR_14   5 lalaeallalGdpdeAiallr 25 
                 l+la++ l++ + d+A++ l+
  EHT99549.1 129 LRLARIQLQQNQADAALKTLD 149
                 79***************9886 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.18
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 ++eall  Gd ++A+++  + ++ 
  EHT99549.1 164 RGEALLSKGDKQGARDAWSKGVES 187
                 799*************99988773 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.023        35       3      29 ..      90     116 ..      88     120 .. 0.85
   2 ?    3.3   0.0     0.075   1.1e+02       4      22 ..     128     146 ..     125     149 .. 0.86
   3 !    8.6   0.0    0.0014       2.2       7      29 ..     164     186 ..     158     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.023
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 a   l++ y  ++++++A+ +++  l+
  EHT99549.1  90 AALDLAKQYVDSNQLDKAESLLQNGLK 116
                 56679999************9998876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.075
       TPR_2   4 lynlGlayyklgdyeeAle 22 
                 + +l+++ +++++ + Al+
  EHT99549.1 128 NLRLARIQLQQNQADAALK 146
                 679**************98 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0014
       TPR_2   7 lGlayyklgdyeeAleafekAle 29 
                 +G+a++ +gd + A++a+ k +e
  EHT99549.1 164 RGEALLSKGDKQGARDAWSKGVE 186
                 8*****************99876 PP

>> T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.7   2.1e-05     0.031     167     232 ..      87     152 ..      42     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
   T6SS_VasJ 167 sadedlaealelaaeegleaalsllqqalaratspRerflwrlllarlleqagkhelAlalleeld 232
                  a  +l+ a + +++++l++a sllq++l+  + +  + +  l+lar+  q+++++ Al+ l  ++
  EHT99549.1  87 GALAALDLAKQYVDSNQLDKAESLLQNGLKDTKDANLQAVINLRLARIQLQQNQADAALKTLDGVK 152
                 3444558899999**********************************************9998775 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   0.00013      0.19       2      85 ..      22     113 ..      21     148 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                      -EEEE-SEEEEEEE....---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHH.....HHHHHHHHHHHT-HHHHHHHHHHHHH CS
  PEP-utilisers_N   2 GiaaspGiaiGkav....eveveeeeveaedveaelerleeAlekvreelealaekalgeee.....aaifeahlmlleDpelleeveerIre 85 
                      G+a + G++iG a     +   ++e+ +a++v ae ++l++A++ ++ e  ++ +  + e++      a ++  ++ ++ ++ l+++e+++++
       EHT99549.1  22 GKALAIGVVIGIAAlggwRYWSSHEQDSAKTVSAEYQKLTSAMQVSKPETLEAVNTFARENSntygaLAALDLAKQYVDSNQ-LDKAESLLQN 113
                      88999999999999**994444667778899***************999877543332222112222335555555443333.3445555555 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.75   1.1e+03       7      24 ..      95     112 ..      88     129 .. 0.65
   2 ?    8.9   0.3    0.0016       2.5       4      24 ..     129     149 ..     125     152 .. 0.92
   3 ?    2.4   0.0       0.2     3e+02       6      23 ..     164     181 ..     162     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleale 24 
                 a+ y   ++ dkA  +l+
  EHT99549.1  95 AKQYVDSNQLDKAESLLQ 112
                 444444356666666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAleale 24 
                 ++la+ +++++++d+Al++l+
  EHT99549.1 129 LRLARIQLQQNQADAALKTLD 149
                 79****************996 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleal 23 
                 +++++++ gd++ A++a+
  EHT99549.1 164 RGEALLSKGDKQGARDAW 181
                 689999988******997 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.013        19       2      25 ..      89     112 ..      88     113 .. 0.92
   2 ?    6.6   0.6    0.0096        14       7      24 ..     131     148 ..     129     149 .. 0.87
   3 ?   -0.5   0.1       1.9   2.9e+03       7      24 ..     164     181 ..     161     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
       TPR_4   2 rallaLArallalGdldeAralle 25 
                  a+l+LA  + +  +ld A+ ll+
  EHT99549.1  89 LAALDLAKQYVDSNQLDKAESLLQ 112
                 699*****************9996 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0096
       TPR_4   7 LArallalGdldeArall 24 
                 LAr +l++ ++d+A+ +l
  EHT99549.1 131 LARIQLQQNQADAALKTL 148
                 9*************8655 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.9
       TPR_4   7 LArallalGdldeArall 24 
                 +++all  Gd   Ar+++
  EHT99549.1 164 RGEALLSKGDKQGARDAW 181
                 689999999999999875 PP

>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3     0.012        18     115     138 ..      90     113 ..      87     119 .. 0.83
   2 ?    5.9   0.4    0.0076        11       4      29 ..     128     153 ..     125     163 .. 0.86
   3 ?    0.9   0.0      0.27     4e+02      80      93 ..     167     180 ..     162     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
        YfdX 115 aavkkAaelleegkyyeAkeaLke 138
                 aa++ A +++++++ ++A  +L++
  EHT99549.1  90 AALDLAKQYVDSNQLDKAESLLQN 113
                 688999999999999999999875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0076
                 HHHHHHHHHCTT-HHHHHHHHHHHHH CS
        YfdX   4 diqkArlaldqgdtkeAkkllekAqg 29 
                 +++ Ar +l+q++ ++A+k l+ ++g
  EHT99549.1 128 NLRLARIQLQQNQADAALKTLDGVKG 153
                 6789****************998876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.27
                 HHHHTT-HHHHHHH CS
        YfdX  80 ellkkgdtqaArel 93 
                 +ll kgd+q+Ar++
  EHT99549.1 167 ALLSKGDKQGARDA 180
                 68999999999975 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.11   1.7e+02      13      33 ..      88     108 ..      80     109 .. 0.80
   2 ?    3.8   0.4     0.059        88      13      33 ..     125     145 ..     111     146 .. 0.86
   3 ?    2.5   0.0      0.16   2.4e+02      19      33 ..     164     178 ..     159     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.11
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a a   LA+ +   ++l++A+
  EHT99549.1  88 ALAALDLAKQYVDSNQLDKAE 108
                 567778999999*****9997 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.059
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 a+    LA+++l++++ + A+
  EHT99549.1 125 AVINLRLARIQLQQNQADAAL 145
                 666778************997 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.16
      TPR_17  19 LAelllknGdlmtAr 33 
                 ++e+ll++Gd++ Ar
  EHT99549.1 164 RGEALLSKGDKQGAR 178
                 699*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1130  (0.0630264); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1706.53
//
Query:       EHT99550.1  [L=424]
Description: histidyl tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-45  155.0   0.0    3.5e-45  154.6   0.0    1.1  1  tRNA-synt_His   Histidyl-tRNA synthetase
    1.4e-35  122.9   0.0    2.3e-35  122.2   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    2.6e-12   46.7   0.0    5.4e-12   45.7   0.0    1.6  1  HGTP_anticodon  Anticodon binding domain
     0.0041   16.6   0.0       0.11   11.9   0.0    2.3  2  tRNA-synt_2d    tRNA synthetases class II core domain (F)
     0.0043   16.2   0.4        6.4    5.8   0.0    3.0  3  tRNA-synt_2     tRNA synthetases class II (D, K and N)


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   9.8e-49   3.5e-45       1     310 []      10     312 ..      10     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 9.8e-49
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHH....HS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHH.TSS-EEE CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedld....qtfklvDqsgrllglRaDiTpqvaRiaahrln.rerplRl 91 
                    g++d+lp++ + +++++  l ++++s+GY+++++P++E +  + +++ge +d    +++ + D +g++l lR++ T+  +R+  ++    ++ +Rl
     EHT99550.1  10 GMNDFLPADTAIWQRVEDVLKSVLASYGYSEIRLPIVEQTPLFKRAIGEVTDvvekEMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLlYNQEQRL 105
                    899******************************************9999988887789999999*****************97766555******* PP

                    EEEEEEEESS-SSTT--CCEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHCT.SSSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHH CS
  tRNA-synt_His  92 cYaGsvlrtrpdglgrsreplQvGaEliGaegleadlEvlslllealeaaag.vkelrldlghvglvralleaaglsesleeallaalarkdlael 186
                    +Y+G+++r ++ + gr r++ Q+G+E++G +g++ d+E++ l +  ++ a+g  +++rl+l+++g ++        ++s +eal+a+l++++  +l
     EHT99550.1 106 WYMGPMFRYERPQKGRYRQFHQIGVEVFGLQGPDIDAELIMLNARWWK-ALGiADHVRLELNSIGSLD-------ARASYREALVAFLEQHKE-AL 192
                    ***********************************************7.999569********99888.......57899********99985.56 PP

                    HHHHHCCTTHHHCCHCC...HCCHCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEETT-SS..- CS
  tRNA-synt_His 187 kelaaeaglkealrellkalelygdaevleealealaaapalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaayaegvgq..a 280
                    +e +++ ++ ++ +++l++   + d ++l + + +l +  + ++ +++++ l all++++   +++t++  ++rg++Yy+ +v + ++++ g+  +
     EHT99550.1 193 DEDCKR-RMYSNPMRVLDS--KNPDIQTLLNDAPQLGDFLD-EESRAHFDGLRALLDDAG---IAYTVNQRLVRGLDYYNRTVIEWVTDSLGSqgT 281
                    777766.466777888766..47777888888788877655.88999**********986...*************************9877555* PP

                    SEEEEEECTTTGGG.T---EEEEEEEEHHHH CS
  tRNA-synt_His 281 iarGGrYdelgaaf.grarpAtGfsldleal 310
                    + +GGrYd+l++++ gra p++Gf++ +e+l
     EHT99550.1 282 VCGGGRYDGLVEQLgGRATPGVGFAMGMERL 312
                    ***************************9987 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0   6.3e-39   2.3e-35       1     179 []      68     320 ..      68     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 6.3e-39
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEE..EBGGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevl..rskrLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlg 95 
                   Y+++drn+++++L+P++++++v+++++++l  +++   ++l+++++++R+E++ ++G  R+r+Fhq + +vf++++  +d++++li++ +r++++lg
    EHT99550.1  68 YTFDDRNGESLTLRPEGTAGCVRAGIEHGLlyNQE---QRLWYMGPMFRYERP-QKG--RYRQFHQIGVEVFGLQG--PDIDAELIMLNARWWKALG 156
                   9****************************999***...***************.***..*****************..******************* PP

                   .SCEEEEEEGTTSC................................................................................... CS
                   xxxxxxxxxxxxxx................................................................................... RF
  tRNA-synt_2b  96 lefraiielmsaks................................................................................... 109
                   +  ++ +el+s++s                                                                                   
    EHT99550.1 157 IADHVRLELNSIGSldarasyrealvafleqhkealdedckrrmysnpmrvldsknpdiqtllndapqlgdfldeesrahfdglrallddagiaytv 253
                   **9999999**999*********************************************************************************** PP

                   .......BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 110 .......adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileqn 179
                          +dy++++++e+v+ sl++++ +++ ++++++l+e+lg+++        ++  +++a+g+eRl+++++++n
    EHT99550.1 254 nqrlvrgLDYYNRTVIEWVTDSLGSQG-TVCGGGRYDGLVEQLGGRA--------TP-GVGFAMGMERLVLLVQAVN 320
                   ***************************.*******************........99.99*************9976 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.5e-15   5.4e-12       1      92 [.     330     420 ..     330     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.5e-15
                     SEEEEESSSS.HHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHH CS
  HGTP_anticodon   1 qvvviplnek.aeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklk 92 
                     +v+vi+ +++ + +++++a+kl+++L +  + + +   +++++k++++ad+ g ++a+v+Ge+e + g+v ++d+ ++eq++++ ++++++l+
      EHT99550.1 330 DVYVIASGQGvQSAAMQLAEKLRDQLPDMKLMTNF--GGGNFKKQFARADKWGARVALVLGEDEQKAGQVVIKDLRNGEQQTLAQADAAAALR 420
                     6999*999966555667777777777766665555..9***************************99*****************999998886 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.2e-05      0.11      16     129 ..      19     130 ..       7     154 .. 0.84
   2 ?    2.0   0.1     0.034   1.2e+02     205     227 ..     297     318 ..     282     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
                   -SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHH....TTS-SSEEEEEEE CS
  tRNA-synt_2d  16 lhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtl....ekkkppikiisig 108
                   + + ++v + +k+++ ++g++e++ p ve+      a+    d   ++m   + + ++++   e+l+LR   ta  +r+        ++ +++  +g
    EHT99550.1  19 TAIWQRVEDVLKSVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEM---YTF-DDRN--GESLTLRPEGTAGCVRAGiehgLLYNQEQRLWYMG 109
                   5567899999******************999988888877777655554...445.4455..678*************9867666677899****** PP

                   EEEBSST-SSSB-SEEEEEEE CS
  tRNA-synt_2d 109 rvfRrdavDathlaeFhqveg 129
                    +fR +   + +  +Fhq+  
    EHT99550.1 110 PMFRYERPQKGRYRQFHQIGV 130
                   ******************965 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.034
                   -.TTSEEEEEEEEHHHHHHHHHT CS
  tRNA-synt_2d 205 ideevsgfafGlGveRlamlkyg 227
                     + ++g++f +G+eRl +l   
    EHT99550.1 297 G-RATPGVGFAMGMERLVLLVQA 318
                   4.57899**********999765 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.043   1.6e+02      27      52 ..      24      49 ..      11      70 .. 0.86
   2 !    5.8   0.0    0.0018       6.4      92     177 ..     103     181 ..      96     274 .. 0.72
   3 !    5.8   0.2    0.0018       6.4     270     298 ..     288     316 ..     284     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHTT-EE----SEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 27 tvtkavrkyleengfieietPiLsks 52
                 +v + ++++l + g+ ei  Pi+ ++
   EHT99550.1 24 RVEDVLKSVLASYGYSEIRLPIVEQT 49
                 6777889999************9887 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0018
                  SEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  92 drvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeai 177
                  +r + ++++FR E+ ++ r   +F qi +e+  ++  di   l  l  + +k +  ++a++++   ++   +l     r +y+ea+
   EHT99550.1 103 QRLWYMGPMFRYERPQKGRYR-QFHQIGVEVFGLQGPDIDAELIMLNARWWKAL--GIADHVRLELNSIG-SLD---ARASYREAL 181
                  68899***************9.*******9977777776666666666666666..55555555444422.222...455555555 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0018
                  GHHHHHHHHCT--SEEEEEEEHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 270 fswylealeyGapphgGlglGldRlvmll 298
                  ++ ++e+l   a p  G+++G++Rlv l+
   EHT99550.1 288 YDGLVEQLGGRATPGVGFAMGMERLVLLV 316
                  6778899999999************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3158.37
//
Query:       EHT99551.1  [L=373]
Description: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-130  434.7   0.2   2.8e-130  434.5   0.2    1.0  1  GcpE      GcpE protein


Domain annotation for each model (and alignments):
>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.5   0.2  1.6e-134  2.8e-130       2     350 ..      13     354 ..      12     355 .. 0.99

  Alignments for each domain:
  == domain 1  score: 434.5 bits;  conditional E-value: 1.6e-134
                 --EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHHTT-SS-EEEEE-SSCHHHHHHHHCC-SEEE CS
        GcpE   2 revkvgkvkiGgeapiavqsMtntdtadveatvkqikrlaeaGaelvRvtvqdeeeaealkeikeklkkkglkvplvaDihfnpklaleaaeagvdkvR 100
                 +++ vg+v+iG++apiavqsMtnt+t+dv+atv+qik+l+++G+++vRv+v+++++aea+k ik+++     +vplvaDihf++++al++ae+gvd++R
  EHT99551.1  13 KRIYVGQVPIGDGAPIAVQSMTNTRTTDVAATVSQIKALERVGVDIVRVSVPTMDAAEAFKLIKQQV-----NVPLVADIHFDYRIALKVAEYGVDCLR 106
                 6799***************************************************************.....*************************** PP

                 E-TTTSSSTTHHHHHHHHHHHHHHHHT-EEEEEEEGGG--HHHHHHHCC.THHHHHHHHHHHHHHHHHTT--GEEEEEE-SSHHHHHHHHHHHHHH--S CS
        GcpE 101 iNPGnigdgkkkeekvkelveaakekgtaiRiGvNhGSLskrllskygd.tpealvesalefleilekldfkdiviSlKasnvvvmveayrllaeeldy 198
                 iNPGnig+    +e+++++v++a++k+++iRiGvN+GSL+k+l++kyg+ tp+al+esa+++++ l++l+f++++iS+Kas+v+ +ve+yrlla++++ 
  EHT99551.1 107 INPGNIGN----NERIRSVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEpTPQALLESAMRHVDHLDRLNFDQFKISVKASDVFLAVESYRLLAKQIEQ 201
                 ********....9************************************9************************************************* PP

                 -EEE--TT-ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHHHHHHHTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCHHCG-EE CS
        GcpE 199 plHlGvTEAGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvakeiLqalrlrksktelisCPsCgRtlfdlqelveeveealehlkkglki 297
                 plHlG+TEAG  ++g++ksa+g+g LL+egiGdT+R+SL++dp+eEvkv+ +iL++lr+r++++++i+CP+C+R++fd++ +v+ +e++le++ +++++
  EHT99551.1 202 PLHLGITEAGGARAGAVKSAIGLGLLLSEGIGDTLRISLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDV 300
                 *************************************************************************************************** PP

                 EEESSTCCHHHHCCCSSEEEEEBTTCEEEEETTEEE.ECEESSCHHHHHHHHHH CS
        GcpE 298 avmGCiVNGpgEaadAdlGivggkgkvslykkkevv.kkvpeeeavdellelik 350
                 +++GC+VNGpgEa  + lG++g+++k  +y+++     ++++++++d+l + i+
  EHT99551.1 301 SIIGCVVNGPGEATVSTLGVTGSNKKSGFYEDGVRQrDRLDNDNMIDQLEARIR 354
                 *********************************999899**********98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2759.12
//
Query:       EHT99552.1  [L=338]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-23   82.2   0.0    4.9e-23   81.1   0.0    1.6  1  DUF4115          Domain of unknown function (DUF4115)
    2.9e-14   52.7   0.4    5.2e-14   51.9   0.4    1.4  1  HTH_25           Helix-turn-helix domain
    6.4e-08   32.8   0.2    1.7e-07   31.4   0.2    1.7  1  HTH_31           Helix-turn-helix domain
    4.2e-06   26.7   0.0    9.5e-06   25.6   0.0    1.6  1  HTH_3            Helix-turn-helix
    1.6e-05   24.9   0.0    2.9e-05   24.0   0.0    1.4  1  HTH_19           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.042   13.0   7.2      0.051   12.8   7.2    1.1  1  SOG2             RAM signalling pathway protein
       0.17   11.4   0.1        0.3   10.6   0.1    1.4  1  Sigma70_r4       Sigma-70, region 4


Domain annotation for each model (and alignments):
>> DUF4115  Domain of unknown function (DUF4115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   1.9e-26   4.9e-23       1      74 []     261     335 ..     261     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.9e-26
     DUF4115   1 lvltatadsWveVrdadGkvlfegtlkaGetkevsgkppltltiGnagavevsvnGkpvdllgy.argnvarltl 74 
                 +v+t+tad+W+eV+da+Gk+lf+g+ ++G ++++sg++p++l+iG+++av v++++kpvdl+ + + ++varltl
  EHT99552.1 261 VVMTFTADCWLEVSDATGKKLFSGIQRSGGKLSLSGTAPYRLKIGAPAAVHVEYQNKPVDLSRFiRNNQVARLTL 335
                 79**************************************************************88888****97 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.4     2e-17   5.2e-14       1      61 [.      18      78 ..      18      79 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 2e-17
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT--HHH CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLgldpee 61
                rLr aRe++gl+ + va+++ ++ ++++ +Eed++ a  + ++lrgy+r+YArl+ + +ee
  EHT99552.1 18 RLRIAREQMGLTQQNVAERLCLKLSTVRDIEEDKSPADLASTFLRGYIRSYARLVHIPEEE 78
                79*******************************988877899***************9987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   6.8e-11   1.7e-07       3      61 ..      16      79 ..      15      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.8e-11
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspa......vlealaralgldpaer 61
                Ga+Lr +Re+ GL+q+ vAerl++  st++++E  + +   +a       ++++ar++  +++e+
  EHT99552.1 16 GARLRIAREQMGLTQQNVAERLCLKLSTVRDIEEDKSP-ADLAstflrgYIRSYARLVHIPEEEL 79
                89********************************9996.64444444448888888888888775 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.7e-09   9.5e-06       1      35 [.      19      53 ..      19      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.7e-09
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSC CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGern 35
                l+ +R+q gl+q+ +Ae+l+++ st+++iE +++ 
  EHT99552.1 19 LRIAREQMGLTQQNVAERLCLKLSTVRDIEEDKSP 53
                789****************************9885 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.1e-08   2.9e-05       1      62 [.      16      82 ..      16      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.1e-08
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aell.....lkiaealgidleyllqg 62
                G rL+ aRe+ gltq+ +aerl    s  + iE +k+  ++ a+++     +++a+++ i++e+ll +
  EHT99552.1 16 GARLRIAREQMGLTQQNVAERLCLKLSTVRDIEEDKS-PADlASTFlrgyiRSYARLVHIPEEELLPM 82
                89*********************************87.5557777799999**************975 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   7.2     2e-05     0.051     242     347 ..     145     244 ..      75     286 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
        SOG2 242 srsrrssssgnsaspaangaqsetsersasssgvqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsnt.nasastprslattpa 338
                 s s +++ssg ++++      ++  ++s sss++  +++s+Pl++g++++  + +++ ++++t ++++       +sss+ n+  +s s+ + ++tt++
  EHT99552.1 145 SMSDQNGSSGDNSQS------IPLGQNSGSSSAAADNSTSVPLTSGNSAANpAPANSGTAASTPAENDNANA--ATSSSAENNaVVSPSQAPVENTTAP 235
                 333333343333333......444444555555566677778888888874333333333333333222222..2223333322555555555554444 PP

        SOG2 339 ppasaesf.a 347
                  ++s +++ +
  EHT99552.1 236 -TSSNATQpM 244
                 .555554322 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00012       0.3      19      42 ..      26      49 ..      18      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                TT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 19 eglTleEIgerlgiSrerVrqiek 42
                 glT++ ++erl + +++Vr ie 
  EHT99552.1 26 MGLTQQNVAERLCLKLSTVRDIEE 49
                68*******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1204  (0.0671538); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2599.55
//
Query:       EHT99553.1  [L=243]
Description: putative fimbrial biogenesis protein precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-08   31.6  17.2      0.076   13.2   0.9    5.1  5  TPR_2     Tetratricopeptide repeat
    2.8e-07   30.7  21.6    2.5e-05   24.5   3.6    3.7  3  TPR_12    Tetratricopeptide repeat
    1.4e-06   28.7  19.6     0.0014   19.1   1.3    4.0  4  TPR_19    Tetratricopeptide repeat
    0.00028   21.0  13.8    0.00049   20.3   0.4    4.7  5  TPR_17    Tetratricopeptide repeat
    0.00049   19.9  11.3    0.00062   19.5   5.4    2.4  3  TPR_21    Tetratricopeptide repeat-like domain
     0.0011   19.6  28.0      0.039   14.6   5.4    3.4  3  TPR_16    Tetratricopeptide repeat
     0.0028   18.3  26.4      0.075   13.9   2.9    5.6  6  TPR_14    Tetratricopeptide repeat
     0.0041   17.0   1.9      0.031   14.1   0.3    2.6  3  DUF410    Protein of unknown function (DUF410)
     0.0054   16.8   6.9        6.5    7.2   0.1    4.4  4  TPR_8     Tetratricopeptide repeat
     0.0063   16.7   9.2      0.048   13.9   1.2    2.6  3  HemY_N    HemY protein N-terminus
     0.0069   15.6   0.0       0.01   15.0   0.0    1.2  1  DUF2491   Protein of unknown function (DUF2491)
  ------ inclusion threshold ------
      0.057   13.3   0.2      0.057   13.3   0.2    3.7  4  TPR_10    Tetratricopeptide repeat
       0.37   10.7  15.0        1.6    8.7   0.4    4.9  5  TPR_1     Tetratricopeptide repeat
        1.8    8.7  15.1        1.5    9.0   4.5    3.6  3  TPR_9     Tetratricopeptide repeat
        2.1    8.7   8.6          7    7.1   1.2    3.3  4  TPR_20    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.9   6.3e-05     0.076       2      34 .]      29      61 ..      28      61 .. 0.91
   2 !    9.0   0.2    0.0014       1.6       8      34 .]      69      95 ..      64      95 .. 0.92
   3 !    8.4   0.4    0.0021       2.5       5      27 ..     100     122 ..      97     129 .. 0.85
   4 !    9.8   0.3   0.00075      0.89       3      28 ..     134     159 ..     132     164 .. 0.85
   5 ?   -2.0   0.0       4.7   5.6e+03      12      33 ..     210     231 ..     209     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.3e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAleldPnn 34
                e+  +lG+ y++ +dy  A++ f +A + +P++
  EHT99553.1 29 ELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKD 61
                66678***********************99986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0014
       TPR_2  8 GlayyklgdyeeAleafekAleldPnn 34
                ++++ ++g+   A+ +f +A +++P n
  EHT99553.1 69 ARLAQRQGQTSAAHLHFLQAQQIAPYN 95
                67899*******************975 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0021
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                 +n G  +  lg+y+eA++ f +A
  EHT99553.1 100 NNYGAFLCTLGQYDEAHQQFIRA 122
                 788999999*********99777 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00075
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                 a+   G++y+++gd + A++a+  A 
  EHT99553.1 134 AYELSGYCYLRAGDRQSARAALSYAR 159
                 78888***************998775 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.7
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 +++g++++  ++ ++ ++  P+
  EHT99553.1 210 AQQGNHADVSRYGDQLVRRFPQ 231
                 6899999888888888877775 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   7.8   0.00091       1.1       5      75 ..      30      92 ..      27      93 .. 0.85
   2 !   24.5   3.6   2.1e-08   2.5e-05       5      69 ..      98     156 ..      96     164 .. 0.88
   3 ?   -1.9   0.1       3.6   4.3e+03      13      13 ..     209     209 ..     184     230 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00091
      TPR_12  5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75
                +  +l++ +++  +y  A++++ +a ++a     p+     +++ + +rl +++g++ +A+ ++ +a +ia
  EHT99553.1 30 LRLQLGMHYLAVNDYSAARRNFLRAQAAA-----PKD---YRVQLAFARLAQRQGQTSAAHLHFLQAQQIA 92
                55579999999999999999999998888.....443...3699***********************9886 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 2.1e-08
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 ++nn++a+l+ lg+ydeA + + +a ++++    +d    + ++   g +y+++g+ + A+++l 
  EHT99553.1  98 IANNYGAFLCTLGQYDEAHQQFIRAKDAQE----GDA--RIDAYELSGYCYLRAGDRQSARAALS 156
                 5679*********************99992....565..9*********************9886 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.6
      TPR_12  13 l 13 
                  
  EHT99553.1 209 A 209
                 2 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.6   6.1e-05     0.073      22      67 ..      25      70 ..      23      71 .. 0.92
   2 !   19.1   1.3   1.2e-06    0.0014       4      61 ..      75     132 ..      72     134 .. 0.93
   3 !    6.6   1.3    0.0093        11      32      57 ..     139     164 ..     122     173 .. 0.71
   4 ?    0.0   0.3       1.1   1.3e+03      15      62 ..     189     236 ..     168     241 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.1e-05
      TPR_19 22 pknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67
                p+ ae+rl+L   +la +++ +A++   ++++++p+d r++ + A+
  EHT99553.1 25 PGAAELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKDYRVQLAFAR 70
                8899*********************************999987666 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.2e-06
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddary 61 
                 +g+  +A+ ++ qa q +p n++++ ++   l  lgq+deA +   ++ +++  dar+
  EHT99553.1  75 QGQTSAAHLHFLQAQQIAPYNGYIANNYGAFLCTLGQYDEAHQQFIRAKDAQEGDARI 132
                 9******************************************999999998888875 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0093
      TPR_19  32 AeallalgqldeAealLdalpeedpd 57 
                   ++l +g+ + A+a+L+ + + d+ 
  EHT99553.1 139 GYCYLRAGDRQSARAALSYARDVDRS 164
                 78999999999999999888777765 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 1.1
      TPR_19  15 eqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                  +++q  p+ a+ ++l ++   ++g+ ++  +  d+l + +p++  y+
  EHT99553.1 189 LELYQPLPETARSLALHIRFAAQQGNHADVSRYGDQLVRRFPQSIKYQ 236
                 445555666777777777788888887777776677777777665555 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       3.3   3.9e+03      13      33 ..      28      48 ..      24      49 .. 0.74
   2 ?    5.1   0.1     0.029        34       2      32 ..      51      81 ..      50      82 .. 0.92
   3 !   20.3   0.4   4.1e-07   0.00049       2      34 .]      85     117 ..      84     117 .. 0.96
   4 ?    1.9   0.1       0.3   3.6e+02      14      33 ..     133     152 ..     132     153 .. 0.79
   5 ?   -1.0   0.1       2.6   3.1e+03      16      24 ..     182     190 ..     182     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.3
      TPR_17 13 adaynnLAelllknGdlmtAr 33
                a++  +L+  +l  +d+  Ar
  EHT99553.1 28 AELRLQLGMHYLAVNDYSAAR 48
                777788888888888888876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.029
      TPR_17  2 ylkaleldPnnadaynnLAelllknGdlmtA 32
                +l+a +  P++  +    A+l  ++G++  A
  EHT99553.1 51 FLRAQAAAPKDYRVQLAFARLAQRQGQTSAA 81
                7899999********************9887 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 4.1e-07
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +l+a ++ P n +  nn++ +l+ +G++++A+q
  EHT99553.1  85 FLQAQQIAPYNGYIANNYGAFLCTLGQYDEAHQ 117
                 899999*************************98 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.3
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 day + ++++l++Gd + Ar
  EHT99553.1 133 DAYELSGYCYLRAGDRQSAR 152
                 5677779*******977776 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.6
      TPR_17  16 ynnLAelll 24 
                 + nLA ll+
  EHT99553.1 182 WANLALLLE 190
                 789999885 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   5.4   5.2e-07   0.00062      76     179 ..      28     129 ..      20     135 .. 0.87
   2 ?    3.7   0.2     0.037        44     150     180 ..     136     166 ..     131     179 .. 0.82
   3 ?   -3.4   0.0       5.4   6.5e+03      48      71 ..     208     231 ..     191     237 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.2e-07
      TPR_21  76 alaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeA.lktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAl 173
                 a   L+l  +  + +d+ aA+ ++ ++ + a+++   +la  RLa+    ++++ +A l+ L+a++ + +++ +a+  G  l   g+ deA++ + +A 
  EHT99553.1  28 AELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKDYRVQLAFARLAQR---QGQTSAAhLHFLQAQQIAPYNGYIANNYGAFLCTLGQYDEAHQQFIRAK 123
                 5567899999999**********999999999999999999999975...55555553999************************************** PP

      TPR_21 174 aaleek 179
                 +a+e +
  EHT99553.1 124 DAQEGD 129
                 999876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.037
      TPR_21 150 elrGDilvaqgkldeAraaYqaAlaaleeka 180
                 el G  +++ g+++ Araa + A +   +k 
  EHT99553.1 136 ELSGYCYLRAGDRQSARAALSYARDVDRSKG 166
                 899999*************998887766665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.4
      TPR_21  48 eaveakdaakakeaaeeladeygg 71 
                  a++++++a++++  ++l+ ++++
  EHT99553.1 208 FAAQQGNHADVSRYGDQLVRRFPQ 231
                 466677777788877887777765 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   9.3   4.7e-05     0.056       1      67 [.      32      95 ..      22      96 .. 0.95
   2 !   14.6   5.4   3.3e-05     0.039      10      61 ..     109     159 ..     108     168 .. 0.89
   3 ?   -0.8   0.1       2.1   2.5e+03      31      52 ..     196     217 ..     185     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
      TPR_16  1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67
                l+l++ +l+ +dy +A++ + +a +++   P +++ +l+ +++a rqg   +A   ++ a++ ap++
  EHT99553.1 32 LQLGMHYLAVNDYSAARRNFLRAQAAA---PKDYRVQLAFARLAQRQGQTSAAHLHFLQAQQIAPYN 95
                6799***********************...**999******************99999999999985 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.3e-05
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +g+yd+A  ++ +a +++ ++  + +A+ l+g ++lr+g+ + A+a++  a 
  EHT99553.1 109 LGQYDEAHQQFIRAKDAQEGDA-RIDAYELSGYCYLRAGDRQSARAALSYAR 159
                 69*********99999997776.9*********************9998776 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.1
      TPR_16  31 PdaaeAllllgdaalrqgrlae 52 
                 P++a++l l  + a++qg++a+
  EHT99553.1 196 PETARSLALHIRFAAQQGNHAD 217
                 5566666666667777777764 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.9   6.3e-05     0.075       2      44 .]      29      71 ..      28      71 .. 0.95
   2 ?    4.3   0.4     0.078        93       4      34 ..      65      95 ..      63     105 .. 0.85
   3 !    8.0   0.1    0.0047       5.7       7      36 ..     102     131 ..      99     141 .. 0.84
   4 ?    2.2   0.3      0.35   4.2e+02       8      24 ..     139     155 ..     132     162 .. 0.82
   5 ?    0.5   0.5       1.3   1.6e+03      21      38 ..     170     188 ..     157     193 .. 0.57
   6 !    7.8   0.1    0.0058       6.9       8      42 ..     206     240 ..     197     241 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.3e-05
      TPR_14  2 eallalaeallalGdpdeAiallrralalaPddaeawlllaql 44
                e++l+l+  +la  d+ +A++ + ra a+aP+d +++l+ a+l
  EHT99553.1 29 ELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKDYRVQLAFARL 71
                899***********************************99986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.078
      TPR_14  4 llalaeallalGdpdeAiallrralalaPdd 34
                +la a++  ++G++ +A  ++ +a + aP +
  EHT99553.1 65 QLAFARLAQRQGQTSAAHLHFLQAQQIAPYN 95
                788899999**********999999999976 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0047
      TPR_14   7 laeallalGdpdeAiallrralalaPddae 36 
                 ++++l +lG++deA + + ra +++ +da+
  EHT99553.1 102 YGAFLCTLGQYDEAHQQFIRAKDAQEGDAR 131
                 6788999**************777777765 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.35
      TPR_14   8 aeallalGdpdeAiall 24 
                 +  +l++Gd + A+a+l
  EHT99553.1 139 GYCYLRAGDRQSARAAL 155
                 55699******999998 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.3
      TPR_14  21 iallrralala.Pddaeaw 38 
                 +a ++ra++++ +++++++
  EHT99553.1 170 LAEAERAVEHDqWANLALL 188
                 3445555554224555554 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0058
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                  ++ +++G++++  ++ +++++++P++  ++++la
  EHT99553.1 206 IRFAAQQGNHADVSRYGDQLVRRFPQSIKYQRYLA 240
                 68899***************************998 PP

>> DUF410  Protein of unknown function (DUF410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   2.6e-05     0.031      83     123 ..      22      62 ..      14      89 .. 0.76
   2 ?    0.3   0.2      0.41   4.9e+02      92     117 ..      65      90 ..      60     119 .. 0.75
   3 ?    0.7   0.1      0.32   3.9e+02      96     150 ..     103     157 ..      94     179 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
      DUF410  83 ekkaGdpeLhhllaklllkegeleeAerhlllgtddsaeel 123
                 +++ G +eL+  l+  +l+ +++++A+r++l+++  +++ +
  EHT99553.1  22 PSQPGAAELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKDY 62 
                 56789****************************77776665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.41
      DUF410  92 hhllaklllkegeleeAerhlllgtd 117
                 + ++a+l  ++g+ ++A+ h+l +++
  EHT99553.1  65 QLAFARLAQRQGQTSAAHLHFLQAQQ 90 
                 6678888889999999*****99933 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.32
      DUF410  96 aklllkegeleeAerhlllgtddsaeelakllvewaee...geeseadlfiaRavLqy 150
                 +  l + g+++eA++ +++++d +    +++ ++ +e    ++ +  d   aRa L y
  EHT99553.1 103 GAFLCTLGQYDEAHQQFIRAKDAQ---EGDARIDAYELsgyCYLRAGDRQSARAALSY 157
                 555566789999*******95444...3333333333322255556666666666665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0054       6.5       1      34 []      28      61 ..      28      61 .. 0.92
   2 ?    2.3   0.0      0.21   2.6e+02       2      33 ..      63      94 ..      62      95 .. 0.87
   3 ?    1.8   0.0       0.3   3.6e+02      13      27 ..     108     122 ..      99     129 .. 0.78
   4 ?    6.3   0.2     0.011        13       2      24 ..     133     155 ..     132     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0054
                CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34
                ae+ ++lg+ yl  +dy +A   + +a  ++p++
  EHT99553.1 28 AELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKD 61
                677899*********************9999986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.21
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldpd 33
                ++ +  +++ + +g+  +A   + +a +++p 
  EHT99553.1 63 RVQLAFARLAQRQGQTSAAHLHFLQAQQIAPY 94
                56677899999****************99995 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.3
                 HTT-HHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyeka 27 
                 +lg+y+eA + + +a
  EHT99553.1 108 TLGQYDEAHQQFIRA 122
                 69******8777766 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.011
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 +ay + g++yl  gd ++A +++
  EHT99553.1 133 DAYELSGYCYLRAGDRQSARAAL 155
                 799999*************9986 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2     4e-05     0.048      58     107 .]      27      76 ..      20      76 .. 0.93
   2 ?   -1.7   0.0       2.8   3.3e+03      72      90 ..     109     127 ..      96     136 .. 0.77
   3 !    6.8   1.1    0.0063       7.6      64     103 ..     137     176 ..     119     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4e-05
      HemY_N  58 karealseGlialaeGdfarAekaaakaaklseapllayllaAqAaqaqg 107
                 +a+ +l+ G+  la  d+++A++++ +a++ +++    +l+ A+ aq+qg
  EHT99553.1  27 AAELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKDYRVQLAFARLAQRQG 76 
                 56778999************************998899*********997 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
      HemY_N  72 eGdfarAekaaakaaklse 90 
                  G++ +A +++ +a++ +e
  EHT99553.1 109 LGQYDEAHQQFIRAKDAQE 127
                 5889999999988887664 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0063
      HemY_N  64 seGlialaeGdfarAekaaakaaklseapllayllaAqAa 103
                 + G   l +Gd + A+ a++ a++ +++++  +l++A+ a
  EHT99553.1 137 LSGYCYLRAGDRQSARAALSYARDVDRSKGESLLAEAERA 176
                 6788999*******************9999*******977 PP

>> DUF2491  Protein of unknown function (DUF2491)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.5e-06      0.01     120     189 ..     111     179 ..      96     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.5e-06
     DUF2491 120 eyelegkryervwdsdeeaeriepvaltEkvyeeegatsevdqfvMlYeRevaedrrElLLvsaeekeee 189
                 +y+ + +++ r+ d++e  +ri++ +l    y   g+ ++    ++ Y+R+v+ ++ E+LL+ ae+  e+
  EHT99553.1 111 QYDEAHQQFIRAKDAQEGDARIDAYELSGYCYLRAGD-RQSARAALSYARDVDRSKGESLLAEAERAVEH 179
                 6889999*****************************9.8889999********************98544 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.086     1e+02       7      27 ..      33      53 ..      28      54 .. 0.84
   2 ?   -1.9   0.2       2.9   3.5e+03       9      27 ..      69      87 ..      65      88 .. 0.73
   3 ?   13.3   0.2   4.8e-05     0.057       4      28 ..      98     122 ..      97     127 .. 0.89
   4 ?   -2.5   0.2       4.4   5.3e+03      12      23 ..     142     153 ..     142     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.086
      TPR_10  7 NLanalrqrgrydeAeallee 27
                 L++ + ++++y +A++ + +
  EHT99553.1 33 QLGMHYLAVNDYSAARRNFLR 53
                79*************997665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
      TPR_10  9 analrqrgrydeAeallee 27
                a++ +++g+  +A  ++ +
  EHT99553.1 69 ARLAQRQGQTSAAHLHFLQ 87
                6677889998888766655 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 4.8e-05
      TPR_10   4 slnNLanalrqrgrydeAealleea 28 
                 + nN ++ l+ +g+ydeA + +++a
  EHT99553.1  98 IANNYGAFLCTLGQYDEAHQQFIRA 122
                 57******************99998 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.4
      TPR_10  12 lrqrgrydeAea 23 
                 + + g+++ A+a
  EHT99553.1 142 YLRAGDRQSARA 153
                 667899999997 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4    0.0013       1.6       2      33 ..      29      60 ..      28      61 .. 0.87
   2 ?    3.4   0.1     0.062        75      11      34 .]      72      95 ..      69      95 .. 0.89
   3 ?    3.8   0.2     0.048        57      12      27 ..     107     122 ..     100     126 .. 0.80
   4 ?    2.6   0.1      0.12   1.4e+02       7      27 ..     138     158 ..     132     164 .. 0.76
   5 ?   -1.5   0.1       2.2   2.6e+03       3      11 ..     181     189 ..     179     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  2 kalynlGnayfklgkydeAleyyekALelnPn 33
                +   +lG+ y+  ++y  A   + +A    P+
  EHT99553.1 29 ELRLQLGMHYLAVNDYSAARRNFLRAQAAAPK 60
                56678*********************988887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.062
                HHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1 11 yfklgkydeAleyyekALelnPnn 34
                 +++g+   A  ++ +A ++ P n
  EHT99553.1 72 AQRQGQTSAAHLHFLQAQQIAPYN 95
                5789*****************976 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.048
                 HHTT-HHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekA 27 
                   lg+ydeA + + +A
  EHT99553.1 107 CTLGQYDEAHQQFIRA 122
                 569******8877776 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.12
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                  G++y++ g+ + A ++ + A
  EHT99553.1 138 SGYCYLRAGDRQSARAALSYA 158
                 59********99998887665 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.2
                 HHHHHHHHH CS
       TPR_1   3 alynlGnay 11 
                  + nl++++
  EHT99553.1 181 QWANLALLL 189
                 699**9987 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.5    0.0012       1.5      25      72 ..      24      71 ..       8      96 .. 0.92
   2 ?   -1.3   0.1       2.1   2.5e+03      39      63 ..     106     130 ..     101     139 .. 0.68
   3 ?    5.1   0.8     0.021        25      36      67 ..     139     170 ..     131     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
       TPR_9 25 aPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72
                +P ++e+r+  G+ +  ++++saA++ + ++ a ap++  + ++ a+L
  EHT99553.1 24 QPGAAELRLQLGMHYLAVNDYSAARRNFLRAQAAAPKDYRVQLAFARL 71
                6999********************************988887776666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
       TPR_9  39 laqlGclsaAladLeaylalapdap 63 
                 l  lG++ +A + + ++ + ++ ++
  EHT99553.1 106 LCTLGQYDEAHQQFIRAKDAQEGDA 130
                 5678999999888888776665333 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.021
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapdaea 67 
                 G ++ + G+ + A+a+L ++ +++ +  +  +
  EHT99553.1 139 GYCYLRAGDRQSARAALSYARDVDRSKGESLL 170
                 7799***************9999887666555 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.015        18      18      46 ..      24      52 ..      21      55 .. 0.90
   2 ?    7.1   1.2    0.0059         7      13      47 ..      53      87 ..      48     122 .. 0.82
   3 ?   -1.1   0.1         2   2.4e+03      37      57 ..     111     127 ..      90     155 .. 0.69
   4 ?   -1.3   0.1       2.3   2.8e+03      56      60 ..     126     130 ..     109     172 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.015
      TPR_20 18 npddldarldlAlallaagryeeAleqLl 46
                +p   ++rl+l  ++la ++y +A  ++l
  EHT99553.1 24 QPGAAELRLQLGMHYLAVNDYSAARRNFL 52
                79999******************988777 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0059
      TPR_20 13 aalaanpddldarldlAlallaagryeeAleqLle 47
                +a aa+p+d+  +l+ A++   +g+  +A  ++l+
  EHT99553.1 53 RAQAAAPKDYRVQLAFARLAQRQGQTSAAHLHFLQ 87
                566899***99999999999999999999877776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2
      TPR_20  37 ryeeAleqLleilkrdrkwed 57 
                 +y+eA +q+++     +++++
  EHT99553.1 111 QYDEAHQQFIR----AKDAQE 127
                 55555555443....333333 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.3
      TPR_20  56 eddaa 60 
                 ++++a
  EHT99553.1 126 QEGDA 130
                 23332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1746.77
//
Query:       EHT99554.1  [L=389]
Description: ribosomal RNA large subunit methyltransferase N [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-17   63.6   0.1    1.6e-16   61.1   0.0    2.3  2  Radical_SAM  Radical SAM superfamily
     0.0011   19.1   0.0     0.0029   17.7   0.0    1.6  1  Fer4_14      4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.054   13.8   0.0       0.12   12.6   0.0    1.7  1  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.96   5.7e+03      48      69 ..      34      55 ..      23      97 .. 0.45
   2 !   61.1   0.0   2.8e-20   1.6e-16       2     162 ..     125     296 ..     124     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.96
                 EEEEEESSTGGGSTTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 48 kevilgggepllypdfveller 69
                 +e++++ ge  +++d v+++  
   EHT99554.1 34 REFFVSLGEKPFRADQVMKWIY 55
                 4444444444444444444432 PP

  == domain 2  score: 61.1 bits;  conditional E-value: 2.8e-20
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHH.........HTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEEC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelka.........ekg.vkevilgggepllypdfvellerlakla....vpgiritvetn 85 
                  + + gC+l C+fC++ +     g  r+l v ei+ +v ++++          +  ++ v++g+gepll+ + v+ + +++  +     +++r+t++t+
   EHT99554.1 125 SSQVGCALECKFCSTAQ----QGFNRNLRVSEIIGQVWRAAKivgaakltgQRPiTNIVMMGMGEPLLNLNNVVPAMEIMLDDfgfgLSKRRVTLSTS 218
                  6789************6....89999999999999998885345666666633447888888*******************99*************** PP

                  SSCHGHHHHHHHHHTT-SEEEEEEBSSSHH...HHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
  Radical_SAM  86 gtlpdeeklerllelgvdrvslgleaadde...kvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeelee 162
                  g++p    l++l ++    ++++l+a++d+   ++  ++ +++++e +l+a++++  +   +   v++ +v+l  +nd++ ++
   EHT99554.1 219 GVVP---ALDKLGDMIDVALAISLHAPNDKlrdDIVPIN-KKYNIETFLAAVKRYIGKSNANqgrVTIEYVLLDHVNDST-DD 296
                  ****...999999999**************776555555.9999999999999988776444677*************76.44 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.8e-07    0.0029       7      92 ..     129     222 ..     125     241 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.8e-07
     Fer4_14   7 gCnlsCkgCd.nketwks......elgkpqteelleqilkdlkkseikiqglvltG.GePLhyenkkellklvkrlkeey....pekkiwletngtle 92 
                 gC l+Ck+C   ++ ++         g++     ++    +l+ ++  i ++v++G GePL   n +++++ ++ + + +     + +++l t+g++ 
  EHT99554.1 129 GCALECKFCStAQQGFNRnlrvseIIGQVWRAAKIVGAA-KLTGQRP-ITNIVMMGmGEPL--LNLNNVVPAMEIMLDDFgfglSKRRVTLSTSGVVP 222
                 9********964555666222111333333333333333.3333333.577**********..89999999999888888666566889999998865 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     2e-05      0.12      12      72 ..     127     193 ..     115     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
     Fer4_12  12 vsgCnlsCkgCfnketwsfk........sgkeftkelleeiiedlkkesiegltllG.GEPllpenaeal 72 
                   gC l+Ck+C     + f+         g+ +  + +  + + + ++ i+ ++++G GEPll  n+  +
  EHT99554.1 127 QVGCALECKFCSTA-QQGFNrnlrvseiIGQVWRAAKIVGAAKLTGQRPITNIVMMGmGEPLLNLNN--V 193
                 359*******9844.44444456666667777788888888999999999*************5544..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2897.62
//
Query:       EHT99555.1  [L=143]
Description: nucleoside diphosphate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-56  190.0   0.0    1.8e-56  189.9   0.0    1.0  1  NDK       Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.0   9.9e-61   1.8e-56       1     135 []       4     138 ..       4     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 9.9e-61
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSSTTS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaapgt 99 
                 ert+++iKP+av++++ig+i++r+e++g+kiv++kml+l++eqae +Yaeh+gkpff+ lvefmtsgpvv+ vlege+a+++ r+l+Gatnpa+a +gt
  EHT99555.1   4 ERTFSIIKPNAVAKNVIGAIYNRFESAGFKIVGAKMLQLSKEQAEGFYAEHQGKPFFDGLVEFMTSGPVVVSVLEGENAVQRHRDLMGATNPANALAGT 102
                 89************************************************************************************************* PP

                 HHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTGGGS CS
         NDK 100 iRadfgvslgeNlvHgSdseesaereiklfFkeeei 135
                 +Rad++ s +eN+ HgSds esa+rei++fF e+ei
  EHT99555.1 103 LRADYADSFTENATHGSDSAESAAREIAYFFGENEI 138
                 ********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1231.50
//
Query:       EHT99556.1  [L=774]
Description: penicillin binding protein 1C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-47  161.7   0.0    1.7e-47  161.2   0.0    1.2  1  Transgly        Transglycosylase
      4e-14   52.5   0.0    2.9e-13   49.7   0.0    1.9  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    7.9e-13   48.3   0.2    7.9e-13   48.3   0.2    2.6  4  BiPBP_C         Penicillin-Binding Protein C-terminus Family


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   2.9e-51   1.7e-47      10     177 ..      59     225 ..      48     226 .. 0.94

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 2.9e-51
    Transgly  10 eeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeIL 108
                 +   r  v+ ee++pa ++a+++ EDr F+ h+G+++ +++rA+++nl+ +++ +GgST+t+Q+++++   + rtl+ Kl + + Al+le++lsK++IL
  EHT99556.1  59 QGIWRYPVTPEEVSPAYIQALLTYEDRWFWYHPGINPLSVLRAAWQNLRYRSVISGGSTLTMQVARLI-DPQPRTLRGKLIQTWRALQLEWHLSKRDIL 156
                 566788999*****************************************9***************95.5566************************** PP

    Transgly 109 eaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 ++YlN++++g+ + Gi+aA++ + gk++++Lt+ eaalLa+l+++Psr++p + pe+a++ r+ vl+r+
  EHT99556.1 157 TLYLNRAPFGGTLEGIGAASWSWLGKAPSQLTRGEAALLAVLPQSPSRLRPDRWPERAEAARNKVLDRL 225
                 ******************************************************************997 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   4.8e-17   2.9e-13       2     302 ..     301     557 ..     300     561 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 4.8e-17
                     EEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSEEE CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgsegit 96 
                     a++v+d  t +v  ++++ ++  +++ g       +++ s+ +PGS+ K+++  +al+ g+i  ++ l+d + ++++  + +++++    +++++
      EHT99556.1 301 AILVVDHTTMAVRGYVGSVDFADDNRFG-----HVDMIASVRSPGSILKPFVYGMALDDGLIHAESLLQDVPRRFGD-YRPGNFDTGF--HGPVS 387
                     68899**************999988888.....8999***********************************99875.4477788876..899** PP

                     HHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTT.SBB-HHHHHHHHHHHHTTTEEE--BSEEE CS
  Transpeptidase  97 lrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiG.ltvtplqlaqayaaiangGklvkPhlvka 190
                      +eal  S n   v++ ++lg++ +   l+++gl             G  +++ + +       G + +   +++ ay+a+++ G+  +++ +  
      EHT99556.1 388 ASEALVRSLNLPAVQVLEALGPKNVAARLRNVGLNL-------RFPPG-AEPNLSLIL------GgTGARMDEIVAAYSAFVRQGNAAQLRWM-- 466
                     **********************************99.......55667.444443333......33899999********************9.. PP

                     EEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEEEEE CS
  Transpeptidase 191 ivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkyavavli 285
                               +++ +++   s+ +a+ +++ l+g+++   g++    + +++a KTGT   + +           +w+vg+ p     y++ v +
      EHT99556.1 467 ---------PDQPLQQRPLLSPGAAWIIRRVLAGEAQPA-GKGNL-PAVVPLAWKTGTSYGYRD-----------AWAVGMNPR----YLIGVWV 535
                     .........35777888889*****************98.44444.4478********998862...........49***9985....8888888 PP

                     CTCS.....SSSSCCHHHHHHH CS
  Transpeptidase 286 eqpk.....eaaggkaaapiak 302
                       p+      + g ++a p+++
      EHT99556.1 536 GRPDatpvaGQFGFASAVPVMN 557
                     7777656666666666666665 PP

>> BiPBP_C  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.3   7.5e+03      35      58 ..     144     168 ..     135     182 .. 0.65
   2 ?   -3.1   0.0       1.5   8.7e+03      42      68 ..     458     467 ..     454     472 .. 0.55
   3 ?   -3.7   0.0       2.2   1.3e+04      40      55 ..     599     615 ..     589     620 .. 0.67
   4 !   48.3   0.2   1.3e-16   7.9e-13       8      89 .]     689     771 ..     683     771 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
     BiPBP_C  35 lqlkargg.eaplrWlldgeplaet 58 
                 lql+   + ++ l+++l+ +p + t
  EHT99556.1 144 LQLEWHLSkRDILTLYLNRAPFGGT 168
                 5666666655578888888888433 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
     BiPBP_C  42 g.eaplrWlldgeplaetkrgrelawqp 68 
                 g +a+lrW+                  p
  EHT99556.1 458 GnAAQLRWM------------------P 467
                 324466665..................4 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.2
     BiPBP_C  40 rgg.eaplrWlldgepl 55 
                 ++  +++ +W l+++++
  EHT99556.1 599 ENCrQRRQSWVLNDTLP 615
                 45534488999999876 PP

  == domain 4  score: 48.3 bits;  conditional E-value: 1.3e-16
     BiPBP_C   8 aasplrIafPadGailaldpdipkrqrlqlkarggea.plrWlldgeplaetkrgrelawqp.epGrhrLtvvDaaGrvddvri 89 
                 +++pl ++++ dG ++++ p+  +   +++ a+gg++ + +W+l+gep++  +++ +l++++ ++G ++L v+D+aG+ ++v++
  EHT99556.1 689 SSAPLIVTGVIDGQRVQPLPGN-STLVMPVAAQGGQGnQRWWFLNGEPVTAENQSGTLSLRLdRSGDYQLVVMDEAGQLATVNF 771
                 578888999***********97.9999********555***********9999999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5902.28
//
Query:       EHT99557.1  [L=882]
Description: alpha-2-macroglobulin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-28   97.7   0.0    1.4e-27   96.4   0.0    1.7  1  bMG10           Bacterial Alpha-2-macroglobulin MG10 domain
    3.7e-10   40.3   0.0    1.7e-09   38.2   0.0    2.1  2  A2M_BRD         Alpha-2-macroglobulin bait region domain
    4.8e-09   35.7   0.0    8.1e-09   34.9   0.0    1.3  1  TED_complement  A-macroglobulin TED domain
    3.9e-06   26.6   0.0    1.7e-05   24.5   0.0    2.0  2  A2M             Alpha-2-macroglobulin family
     0.0044   17.0   0.0      0.011   15.7   0.0    1.6  1  DUF2744         Protein of unknown function (DUF2744)
  ------ inclusion threshold ------
      0.074   13.3   0.0        0.5   10.6   0.0    2.3  2  FixG_C          IG-like fold at C-terminal of FixG, putative 
       0.17   12.2   0.0        0.5   10.7   0.0    1.7  1  Myco_19_kDa     Mycobacterium 19 kDa lipoprotein antigen


Domain annotation for each model (and alignments):
>> bMG10  Bacterial Alpha-2-macroglobulin MG10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   5.6e-31   1.4e-27       3     130 .]     736     868 ..     735     868 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 5.6e-31
       bMG10   3 sveReyeklegkevsksdaklkvGdkvrvrltvttprdleyvaledplPAGlepvnpslgtesesaeeye.......wleeltefsyreirddrvvffa 94 
                 +++Rey++l+g+  + +  +l++G+++ vrltv+++r +++ +++d lPAGle++n++l+ +s+s  +++         +++ ++++ e+rddr+v+++
  EHT99557.1 736 AIKREYFTLDGQAADLN--NLRSGELLVVRLTVSAKRSISDALVVDLLPAGLELENQNLADSSASLGDSAdalkesmMDMQQASIRHIEFRDDRFVAAL 832
                 79*************99..*****************************************999998888899***9977788999************** PP

       bMG10  95 dylpkgtytfeylvravtpGtfsvppakaeemYaPE 130
                        + + yl+ravtpG++++pp ++e+mY PE
  EHT99557.1 833 AVDTYRPTMLIYLARAVTPGRYQLPPPQVESMYVPE 868
                 *99999*****************************9 PP

>> A2M_BRD  Alpha-2-macroglobulin bait region domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.4e-13   1.7e-09      49     139 ..      31     133 ..       1     134 [. 0.78
   2 ?   -1.7   0.0       1.3   3.3e+03      36      64 ..     287     319 ..     258     351 .. 0.65

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.4e-13
                 .S....-EEEEEE--TT---.--EEEEEE..E-.......-CEEEEEEE----.-GGGB-EEEEEEE...-SSSEEEEEEE..E.......T-EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxx RF
     A2M_BRD  49 veeidsstsfsfpvtadmaP.narvvvyyirrd.......gevvadsvqlpvekdfenklsvslesynetrPgeevtlkvkasp.......gslvalaa 132
                 v+  ++ t++ +p+  +++    ++ + ++r++       +++++++++lp+  + +++l+++l++ +++rP++++t++v+as        + +v l+a
  EHT99557.1  31 VP--QGGTTVDVPIANSWQRhDLYFSAIVVREGdktsgatPKRAVGLLHLPMA-TDARRLTLTLDAPEKVRPEQNLTVNVQASReggplpdKVHVLLSA 126
                 22..44559***********99***888888889*******************.99********55999************9888999999******** PP

                 EEHHHHH CS
                 xxxxxxx RF
     A2M_BRD 133 VDksvll 139
                 VD +vl+
  EHT99557.1 127 VDSGVLS 133
                 *****96 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                 BSS-----.-S...S........-EEEEEE--T CS
                 xxxxxxxxxxxxxxx....xxxxxxxxxxxxxx RF
     A2M_BRD  36 vlsrgnivssgekve....eidsstsfsfpvta 64 
                 + +rg i  sg  ++     +++++++++pvta
  EHT99557.1 287 LAARGLIALSGAATQnvtlAKGERKTLQVPVTA 319
                 455666633553322455555666677777776 PP

>> TED_complement  A-macroglobulin TED domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.2e-12   8.1e-09      18     118 ..     406     506 ..     394     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.2e-12
                     HHHHHSSS--SSHHHHGGGTHHHHHHHHHHHHTTGTTTSHHHHHHHHHHHHHHHHHTCBETTSEBBSSS..SS-BEHHHHHHHHHHHHHCHHHST CS
  TED_complement  18 nlesLlrlPygcgEqnmvllapnvyvlkYLekteqltkeikkkaleklekgyqrqlsykkadgsysafgkdssegstWLtAfvlkvlaqakefif 112
                      ++ L   Pygc Eq+   l p +y+++   ++  +++ + +     +e+g  r    ++adgs++++gk +se   WLt +v+  l +a+e  +
      EHT99557.1 406 YISALYAYPYGCLEQTANGLWPSLYTSQAQLTAMGIKTSSDEVRRAAVETGIARLAGMQRADGSFGLWGK-QSEEEFWLTPYVTDFLLRASEAGY 499
                     5788999********************988888888888888888899*********************5.59*************999988766 PP

                     .--HHHH CS
  TED_complement 113 .ideeei 118
                      +++e +
      EHT99557.1 500 aLPDEVV 506
                     3444444 PP

>> A2M  Alpha-2-macroglobulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.4   3.7e+03      38      76 ..      69     107 ..      65     110 .. 0.77
   2 !   24.5   0.0   6.8e-09   1.7e-05       9      92 .]     207     287 ..     200     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
                 TTTEEEEEEEEEEEE--SEEEEEE--SEEETTSEEEEEE CS
         A2M  38 edkglgvaeplevrvfkpffvdlnlPysvrrgeqveika 76 
                 +++++g+ + + ++  + + ++l  P+ vr   ++++++
  EHT99557.1  69 PKRAVGLLHLPMATDARRLTLTLDAPEKVRPEQNLTVNV 107
                 5566777777777777889999999*9999988888776 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 6.8e-09
                 EC...CEEEEEEEEESSSCEEEEEEEEEETTTEEEEEEEEEEEE--SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEEEE CS
         A2M   9 vtdasgkaslsftlPDsiTtWrvtavalsedkglgvaeplevrvfkpffvdlnlPysvrrgeqveikavvfNyldkeikvrvel 92 
                 + d++gk s+++ +P    ++r++    s+d  +g ae+ +++v  p++ +l  P++++ g++ ++   + N +d +++ +v+l
  EHT99557.1 207 L-DKNGKGSITLPVPAFNGELRLMTQVWSDD-SFGAAER-KLVVAAPLVSELATPRFLASGDSASLALDITNLTDLPQTLKVDL 287
                 3.578**************************.*******.***********************************999999875 PP

>> DUF2744  Protein of unknown function (DUF2744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-06     0.011      33      85 ..     335     386 ..     322     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.4e-06
     DUF2744  33 lvlPeeylravskrlwecGvrpvdPereikyqkPergersalnaagsWvsiDe 85 
                 l lP e +   s+++w++Gvrp  P++ + + +  +ge+ + ++a+ + ++D+
  EHT99557.1 335 LNLPGEQV-RPSQQQWKIGVRPPYPTQTLSFDAVINGEQPWQVTAAAFAGLDA 386
                 56774444.469*************************************9997 PP

>> FixG_C  IG-like fold at C-terminal of FixG, putative oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.87   2.2e+03      77     102 ..      85     108 ..      79     120 .. 0.58
   2 ?   10.6   0.0   0.00019       0.5      37      88 ..     271     322 ..     268     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.87
                 EEEEEEEEE-GGG-SSSEEEEEEEEE CS
      FixG_C  77 rkvpvfvrvpaealkkkstpitfkvt 102
                 r++++++ +p++   ++++++t+ v+
  EHT99557.1  85 RRLTLTLDAPEKV--RPEQNLTVNVQ 108
                 4555555555555..55666666664 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00019
                 EEEEE-SSS-EEEEEEEES-SS-EE.E.S--EEEE-TT-EEEEEEEEEE-GG CS
      FixG_C  37 lkilNktekprrytlsveglpglelagraekeitvapgekrkvpvfvrvpae 88 
                 l i+N t+ p+++++++     + l+g a++++t+a+ge +++ v v+++ +
  EHT99557.1 271 LDITNLTDLPQTLKVDLAARGLIALSGAATQNVTLAKGERKTLQVPVTAQNG 322
                 78***************987789999999******************99876 PP

>> Myco_19_kDa  Mycobacterium 19 kDa lipoprotein antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002       0.5       5      69 ..     325     390 ..     322     399 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
  Myco_19_kDa   5 agtatvtvdGqdlqttgsvtCtqaggaltiaig..dgasgvsavltdgdeptvesvgigdvdGftlt 69 
                   g+ +vt+ G +l+  ++v+ +q+++++ ++    +++ ++ av++ +++ +v++ +++++d  tl+
   EHT99557.1 325 DGDVQVTISGLNLP-GEQVRPSQQQWKIGVRPPypTQTLSFDAVINGEQPWQVTAAAFAGLDAATLS 390
                  5789********98.778**************7545799*******************999877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 6652.79
//
Query:       EHT99558.1  [L=276]
Description: hypothetical protein CKS_1524 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-42  143.4   0.1    9.2e-42  142.4   0.0    1.5  2  bMG5      Bacterial Alpha-2-macroglobulin MG5 domain
    7.2e-30  103.4   0.4    2.6e-29  101.7   0.1    1.9  2  bMG6      Bacterial macroglobulin domain 6
     0.0043   17.3   0.0      0.011   15.9   0.0    1.7  2  MG3       Macroglobulin domain MG3


Domain annotation for each model (and alignments):
>> bMG5  Bacterial Alpha-2-macroglobulin MG5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   1.5e-45   9.2e-42       3     127 .]       1     124 [.       1     124 [. 0.99
   2 ?   -3.1   0.0       1.6   9.7e+03      72      89 ..     211     228 ..     193     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 1.5e-45
        bMG5   3 idlelslkekplapgeeveldvegrYLyGAPAaglrlegelllraarealeklpgyefGradeeeekrteeledltldaeGkaelevelpelekakspl 101
                 ++l+l+ +e+p  ++++++++vegrYLyGAPAag++l+g+l+lr+ar+a+++lpgy+fG+ +ee  kr+    d +lda+Gka+l+v ++++++ +spl
  EHT99558.1   1 MALTLKNDEQPQPADADITFNVEGRYLYGAPAAGNALQGQLYLRPARDAVAALPGYQFGDITEEGVKRSLGDVDIKLDANGKAQLTV-ENQWDQLHSPL 98 
                 89*************************************************************************************.9********** PP

        bMG5 102 eaevtvsllEsgGRpVeRsleravwP 127
                 ++++++sllE+gGRpV+R++++a+wP
  EHT99558.1  99 NLILQASLLETGGRPVTRRATQAIWP 124
                 *************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
        bMG5  72 eeledltldaeGkaelev 89 
                 e++ + t+ aeG++++++
  EHT99558.1 211 EDERSITVPAEGSTKVSF 228
                 344456667777776665 PP

>> bMG6  Bacterial macroglobulin domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.27   1.6e+03      69      89 ..      71      91 ..      61      93 .. 0.75
   2 !  101.7   0.1   4.3e-33   2.6e-29       1     101 [.     130     244 ..     130     253 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.27
        bMG6 69 asgtvdlsaegkaklslpvdw 89
                 + +++l+a+gka+l+++ +w
  EHT99558.1 71 GDVDIKLDANGKAQLTVENQW 91
                556778888899998888787 PP

  == domain 2  score: 101.7 bits;  conditional E-value: 4.3e-33
        bMG6   1 Girplfd..............dgeveegseaefeivavdadgkkvatkelkvklyreerdyqWeyssdggwryestekdkpvasgtvdlsaegkaklsl 85 
                 Girplf+              + +v+e+s a f+iv+++++g+k+a+++l+v+l+re+rdy+W++s+++gw+++++ kd + +++++++ aeg++k+s+
  EHT99558.1 130 GIRPLFGnksiydyrsdsyrdEPTVPENSLADFDIVYANSQGEKLAAEKLNVRLIRERRDYYWSFSDSEGWQSRYDAKDLQEDERSITVPAEGSTKVSF 228
                 89999999999999999999999**************************************************************************** PP

        bMG6  86 pvdwGrYrleVedees 101
                 pv+wG+YrleV++ e+
  EHT99558.1 229 PVEWGSYRLEVQAGEK 244
                 ************9887 PP

>> MG3  Macroglobulin domain MG3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.9e-06     0.011      21      77 ..      15      88 ..       7      96 .. 0.72
   2 ?   -2.6   0.0       1.2   6.9e+03      61      76 ..     211     226 ..     178     231 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-06
                T--EEEEEEEEETTS-B---E.EEEEEEE..................E-SSS-EEE-.......--EEEE-BTTEEEEEE- CS
         MG3 21 deelqvsvcAkYtyGkpVkGk.vkvtlclk................qkdkkkkkeee.......qiekelekdGcgsasvs 77
                d +++++v+++Y+yG p  G+ ++ +l+l+                        +ee           +l+++G+++ +v+
  EHT99558.1 15 DADITFNVEGRYLYGAPAAGNaLQGQLYLRpardavaalpgyqfgdI-------TEEgvkrslgDVDIKLDANGKAQLTVE 88
                6789****************966888888777777777755443331.......322344455566677778888777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 --EEEE-BTTEEEEEE CS
         MG3  61 qiekelekdGcgsasv 76 
                 + e++++   +gs++v
  EHT99558.1 211 EDERSITVPAEGSTKV 226
                 3344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2115.92
//
Query:       EHT99559.1  [L=440]
Description: alpha-2-macroglobulin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-41  138.9   0.0      1e-40  138.0   0.0    1.4  1  bMG1             Bacterial Alpha-2-macroglobulin MG1 domain
    1.5e-19   70.2   0.0      1e-18   67.6   0.0    2.4  2  MG2              MG2 domain
    7.1e-19   67.7   0.0    1.9e-18   66.4   0.0    1.8  1  bMG3             Bacterial alpha-2-macroglobulin MG3 domain
    1.2e-05   25.2   0.5      0.074   13.1   0.0    2.5  2  Big_1            Bacterial Ig-like domain (group 1)
    0.00023   21.3   0.0     0.0031   17.7   0.0    2.5  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
     0.0035   17.4   0.1       0.64   10.2   0.0    2.7  2  MG4              Macroglobulin domain MG4
     0.0085   16.1   0.0      0.054   13.5   0.0    2.1  2  Big_10           Bacterial Ig domain
  ------ inclusion threshold ------
      0.017   15.4   0.0        1.3    9.4   0.0    2.9  2  Invasin_D3       Invasin, domain 3
      0.058   14.1   0.0       0.12   13.1   0.0    1.5  1  Big_5            Bacterial Ig-like domain
       0.12   12.7   0.0       0.27   11.4   0.0    1.5  1  SdrD_B           SdrD B-like domain
       0.26   11.3   0.0       0.43   10.6   0.0    1.2  1  Ephrin_lbd       Ephrin receptor ligand binding domain


Domain annotation for each model (and alignments):
>> bMG1  Bacterial Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.0   6.3e-44     1e-40       1     105 []      36     140 ..      36     140 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 6.3e-44
        bMG1   1 akrsagkeltvlDvsevqldGastlvvtfsvpldpeqkfaeklhlvDkksGkvdGaWeLsdnlkelrlrhlePkrklvltvdaglkavngatlekelek 99 
                 a+++ +k+l+++D+se+qldGa++lv+tf++pld++q+ a+k++l+D+++GkvdG+WeLs n+k lr+rh eP+r++++t+d+gl+a++g+tl++++++
  EHT99559.1  36 ASAQVSKPLSIIDLSELQLDGAAALVLTFNQPLDDKQDVAKKVRLTDDQRGKVDGGWELSGNRKALRFRHPEPSRHFTVTIDPGLRAASGETLTAAYSQ 134
                 567789********************************************************************************************* PP

        bMG1 100 kletrd 105
                 k++trd
  EHT99559.1 135 KITTRD 140
                 *****8 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.5     4e+03      42      70 ..      69      97 ..      56     100 .. 0.76
   2 !   67.6   0.0   6.3e-22     1e-18       2      77 ..     365     439 ..     364     440 .] 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.5
                -TTSSEEEEEEEEE-CTTEEEEEEE--TT CS
         MG2 42 dpdgkevkelplatdetggaesefalpea 70
                d+++ + k+ +l++d++g +++ ++l+ +
  EHT99559.1 69 DDKQDVAKKVRLTDDQRGKVDGGWELSGN 97
                45566677778899999999998888766 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 6.3e-22
                 EEEEES-SEE-TT-EEEEEEEEESTTCSB---EEEEEEEE-TTSSEEEEEEEEE-CTTEEEEEEE--TT--SEEEE CS
         MG2   2 afvytDRglYrPgetVslkallrdetlqglaklplkltirdpdgkevkelplatdetggaesefalpeaaklGeys 77 
                 +fv+  R++YrPgetV ++allrd+++++l+ +p+k+++++pdg++v+++ ++ + +g+++++f lp++a++G + 
  EHT99559.1 365 LFVFGPRDIYRPGETVIVNALLRDADGKPLPAQPVKAEVVQPDGEVVRTFVWQPQ-DGLYQQRFSLPTTAMTGGWM 439
                 79*************************************************8765.67*****************7 PP

>> bMG3  Bacterial alpha-2-macroglobulin MG3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.2e-21   1.9e-18       1     101 [.     266     358 ..     266     360 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.2e-21
        bMG3   1 vtdlGlhaklgrdkllvwvtsLdsgkPvagaeVrlldkkgevlaegtTDaqGvarfaallargkegaapylvsArkdedlaflkldwergldlsrfdvp 99 
                 ++d+Gl+ ++   + + +++sL++g+P++g++Vr+l++kg+vl++gt+D++G++r++a+       +++++++A +++++++++l  +++ldl++f v+
  EHT99559.1 266 LSDIGLSLHRFPGQFELFAQSLENGDPLSGVNVRVLNDKGQVLQNGTSDSSGHVRLKAE-------DKGKFLLAIQGDQTSLIDL-ARPALDLAEFPVA 356
                 69*******************************************************99.......99*****************.5***********9 PP

        bMG3 100 gr 101
                 g 
  EHT99559.1 357 GP 358
                 86 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0005      0.82      17      50 ..     289     321 ..     288     326 .. 0.89
   2 !   13.1   0.0   4.5e-05     0.074       5      32 ..     378     405 ..     377     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
       Big_1  17 ngnpvagatVtfsvsggalsassgtTdanGkatv 50 
                 ng p++g++V +  ++g+++ ++gt+d++G+++ 
  EHT99559.1 289 NGDPLSGVNVRVLNDKGQVL-QNGTSDSSGHVRL 321
                 99**************9995.6********9986 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.5e-05
       Big_1   5 dtntltatvkDangnpvagatVtfsvsg 32 
                 +t+ ++a ++Da+g+p++ ++V+ +v +
  EHT99559.1 378 ETVIVNALLRDADGKPLPAQPVKAEVVQ 405
                 6899******************988765 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.9e-06    0.0031       9      56 ..     288     335 ..     286     342 .. 0.88
   2 ?    0.1   0.0      0.62     1e+03       6      32 ..     386     413 ..     382     432 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.9e-06
  CarboxypepD_reg   9 asgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsa 56 
                      ++g p++g++V+v n+ +++ ++ t+d++G+ rl++   g++ + ++ 
       EHT99559.1 288 ENGDPLSGVNVRVLNDKGQVLQNGTSDSSGHVRLKAEDKGKFLLAIQG 335
                      589***********9999999*************98888998888765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.62
  CarboxypepD_reg   6 VtdasgapiagatVtvtn.adtgtvast 32 
                       +da+g+p++   V ++  +++g+v +t
       EHT99559.1 386 LRDADGKPLPAQPVKAEVvQPDGEVVRT 413
                      5899999999988887652344444444 PP

>> MG4  Macroglobulin domain MG4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.029        48      25      61 ..     288     322 ..     285     329 .. 0.88
   2 !   10.2   0.0   0.00039      0.64       9      45 ..     373     409 ..     370     435 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.029
         MG4  25 pdgspaknvpVkiealkseteekeslttdedGtakfs 61 
                 ++g p+++v V++   + + +  ++ t+d++G +++ 
  EHT99559.1 288 ENGDPLSGVNVRVLN-D-KGQVLQNGTSDSSGHVRLK 322
                 5899*******9999.6.799999********99875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00039
         MG4   9 ffKpGlPfsikVlvkdpdgspaknvpVkiealksete 45 
                  ++pG    +  l+ d+dg+p++  pVk e+++ + e
  EHT99559.1 373 IYRPGETVIVNALLRDADGKPLPAQPVKAEVVQPDGE 409
                 699999999**********************873333 PP

>> Big_10  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.3e-05     0.054      99     143 ..      57     104 ..      25     125 .. 0.80
   2 ?   -0.5   0.0      0.65   1.1e+03     141     164 ..     367     390 ..     361     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
      Big_10  99 gqpisikFdkpvedkaavekalkvttspavegafaWlsd...sevdwR 143
                 ++++ ++F++p +dk+ v k++++t +++ +++  W  +   + +++R
  EHT99559.1  57 AAALVLTFNQPLDDKQDVAKKVRLTDDQRGKVDGGWELSgnrKALRFR 104
                 67889***********************99999999543345778888 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.65
      Big_10 141 dwRpkeYwkpgtkVtvkaklygve 164
                  + p++ ++pg +V v+a l++ +
  EHT99559.1 367 VFGPRDIYRPGETVIVNALLRDAD 390
                 57899*************998876 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.11   1.9e+02      32      61 ..     289     318 ..     287     339 .. 0.71
   2 ?    9.4   0.0   0.00081       1.3      21      67 ..     379     428 ..     368     436 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
  Invasin_D3  32 ngnpvsgltvtfsttsag.tlsavtdngdGt 61 
                 ng+p+sg +v +  + +g +l++ t++++G 
  EHT99559.1 289 NGDPLSGVNVRVLND-KGqVLQNGTSDSSGH 318
                 889999999999988.776555555555554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00081
  Invasin_D3  21 tstltvtlkDangnpvsgltvtfstt.sag.tlsa.vtdngdGtytatLt 67 
                 t  + + l+Da+g+p+  + v+      +g ++ + v + +dG y+  ++
  EHT99559.1 379 TVIVNALLRDADGKPLPAQPVKAEVVqPDGeVVRTfVWQPQDGLYQQRFS 428
                 6678889***************9976677874444255999999998776 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.2e-05      0.12      22     100 ..      57     133 ..      25     138 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.2e-05
       Big_5  22 naeitvtFseav.dastvtaatvialsdsettavtgsydasgktvtitpsaeLaanttYtvtitagikDlagnalaapyt 100
                  a++++tF++++ d+++v++++ +  +d +  +v g  + sg++ +++ +   ++++++tvti+ g++ ++g +l+a+y+
  EHT99559.1  57 AAALVLTFNQPLdDKQDVAKKVRL--TDDQRGKVDGGWELSGNRKALRFRH-PEPSRHFTVTIDPGLRAASGETLTAAYS 133
                 3499********666666666555..7888888887657777777777776.46******************88887776 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.27      22      65 ..     291     334 ..     285     345 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      SdrD_B  22 kgisgvtVtLkdakgevvatttTdasGkYkFtnltpGeYkVeft 65 
                 +  sgv+V++ ++kg+v+++ t+d+sG+ + +  ++G++ ++++
  EHT99559.1 291 DPLSGVNVRVLNDKGQVLQNGTSDSSGHVRLKAEDKGKFLLAIQ 334
                 5689*****************************99999988765 PP

>> Ephrin_lbd  Ephrin receptor ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.43     106     162 ..     195     251 ..     183     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
  Ephrin_lbd 106 aespalkeesykkvdtiaadesfeldlgkkskvklntetrsigplskkGfylafqdq 162
                 ++  ++++++  k + +    +fel+  +++++kl+   ++i+pl++ G+yla+  q
  EHT99559.1 195 SNLSTWQSQELLKTSELVYSGRFELNPARNTREKLQLPLKDIKPLQQPGVYLAVMKQ 251
                 56788999999999999999***999999999*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3739.19
//
Query:       EHT99560.1  [L=280]
Description: 3-mercaptopyruvate sulfurtransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-29  102.7   0.0    8.4e-16   58.4   0.0    2.1  2  Rhodanese     Rhodanese-like domain
  ------ inclusion threshold ------
      0.086   13.2   0.0       0.16   12.3   0.0    1.4  1  Peripla_BP_3  Periplasmic binding protein-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   9.4e-20   8.4e-16       1     106 [.       8     129 ..       8     130 .. 0.89
   2 !   42.5   0.0   8.6e-15   7.7e-11      10     105 ..     166     271 ..     158     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 9.4e-20
   Rhodanese   1 sakelkellekgkvallDvR...........ppeeYekghIpgAvnv...skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaa 83 
                 sa++l+e++++g  ++lD+R            + eY + h+pgA  +        + +++++ p +e ++ ++++ gi+ +k+++vy++g+   a +a+
  EHT99560.1   8 SADWLQEHFNDGTLQVLDARmlppgmeatrdIQKEYLAEHLPGAPFFnieTLSDHTSPYPHMLPRAESFAVAMRElGINSDKHLIVYDEGNLFsAPRAW 106
                 699*******************9888777777777*********9997776667777888888888888888888******************99999* PP

   Rhodanese  84 allkklGyknvsvldGGfkawke 106
                 ++l++ G+ +vs+l GG+++wk 
  EHT99560.1 107 WMLRAFGVAQVSILAGGLQGWKT 129
                 *******999***********96 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 8.6e-15
   Rhodanese  10 ekgkvallDvRppeeY...........ekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvl 97 
                 ++g+++++D+R+++++           ++ghIp+++n++++tl  ++   +p +el  +++e g+d  k++v  c +g  a  +  +l++lG  +v ++
  EHT99560.1 166 HEGGAQIVDARAANRFnaevdeprpglHRGHIPNSLNLPWNTLV-EQGALKPEAELRSRFAEAGVDISKPIVASCGSGVTAVVLILALTALGAREVTLY 263
                 666778*********988888888888889********555543.445566777777777777************999994444557778**555**** PP

   Rhodanese  98 dGGfkawk 105
                 dG++++w 
  EHT99560.1 264 DGSWSEWG 271
                 *******6 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.16      18      98 ..      61     132 ..      45     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
                   -TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3  18 egdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalreagl 98 
                   ++ +  +++  r + f+ a++elg++++++++  d+ ++ +a+ra+++l         +A+ +a  ++ +g lq  + ag+
    EHT99560.1  61 DHTSPYPHMLPRAESFAVAMRELGINSDKHLIVYDEGNLFSAPRAWWML---------RAFGVAQVSILAGGLQGWKTAGY 132
                   45556788899***********************************976.........88888888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2337.91
//
Query:       EHT99561.1  [L=255]
Description: rhodanase-like enzyme, sulfur transfer from thiosulfate [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-29  101.5   0.0    4.1e-29  100.8   0.0    1.3  1  SseB_C    SseB protein C-terminal domain
    1.3e-22   80.3   0.2      2e-22   79.8   0.2    1.3  1  SseB      SseB protein N-terminal domain


Domain annotation for each model (and alignments):
>> SseB_C  SseB protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   4.5e-33   4.1e-29       2     106 .]     133     239 ..     132     239 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 4.5e-33
      SseB_C   2 esgervrlgepaeepvdllaalseyfakrkeVkaAylalmrken.ekpslligvdlegdteklfkdagevaaeylpegepvdlvlldeeq.pvakylle 98 
                 e+g+ ++l+e ae p++++++l+++f+k+k+Vk+A++a +r+++ + p+llig+++++d+e+++++ag+va+++l ++ p+d++++ +e+ ++++++++
  EHT99561.1 133 EGGQSLLLSEIAEPPAQMIDSLTQLFSKYKQVKRAFIASIREQAdDVPNLLIGIEADSDIEAIIQAAGSVATDTLLDDAPIDVCEITAEDrGISHFFTA 231
                 6899****************************************9*******************************************888******** PP

      SseB_C  99 evkPFYqr 106
                 +++PFY+r
  EHT99561.1 232 HITPFYER 239
                 ******98 PP

>> SseB  SseB protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.2   2.2e-26     2e-22       1     123 [.       5     115 ..       5     117 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 2.2e-26
        SseB   1 LeealaalrakeadpealaafleallnarvlvpvvaeeeeeeglkvdkeaelalvtleaedgrralpvFTsaeelkkwaadarpvavvlpfaalaalle 99 
                 Lee+l+ +++   +p+++++f++ ll+a+ +vp +  +     ++ d  + ++l+++e+edg++++p+FTs++++  +a ++++ +v lp+++l+++++
  EHT99561.1   5 LEEVLKLAAT---EPAHRPEFFQLLLEADAWVPGESTQ-----QQLDASTPVDLPHWEKEDGSSVIPFFTSEQAM-SEAINDEQPYVRLPVRTLFEMTR 94 
                 899***9998...9**********************88.....3567888*************************.*********************** PP

        SseB 100 gaeaeglvlNPgseyslvlpkeei 123
                 g   e+l+lNP+ +++++++ +ei
  EHT99561.1  95 G---ETLFLNPKLPTGKEFSAAEI 115
                 *...*****************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2068.25
//
Query:       EHT99562.1  [L=428]
Description: aminopeptidase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-102  342.2   0.0   3.3e-102  341.9   0.0    1.1  1  Peptidase_M17  Cytosol aminopeptidase family, catalytic domai
    1.6e-36  124.1   0.3    2.9e-36  123.3   0.3    1.4  1  DUF3663        Peptidase


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.9   0.0  3.7e-106  3.3e-102       3     310 ..     111     422 ..     109     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: 341.9 bits;  conditional E-value: 3.7e-106
                    HHHHHHS-TTTS-HHHHHHHHHH.H.HTCCTEEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SSTTSEEEE..EEEEEEEEEE-TT CS
  Peptidase_M17   3 ardlvntpaneltpeklaeeaee.l.akeagkvevevldeeeleekgmgallaVgkgSeeepprlveleykgakekekkla..lVGKGitfDtGGl 94 
                    +rd +n pa++l pe+la+ a + l +   ++v++++ ++++l+e+g+ +l++Vg+gS ++pp ++ l++++++++e+++   lVGKGitfDtGG+
     EHT99562.1 111 VRDTINLPADDLGPETLAHSAVDlLsELGGEAVSYRITKGDDLREQGYMGLHTVGRGS-NRPPVFLALDFNPTGDSEAPVYacLVGKGITFDTGGY 205
                    79******************9995323344489*************************.56*************888877556************* PP

                    SS--HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEE CS
  Peptidase_M17  95 slKpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdli 190
                    slK+sa+m++mk+DmgGAA+v+gal+++ + +l+++v+++l++a+Nm+s++a+k gd+i+++nGk+vev nTDaEGRLvLAD+l+ a+ +++p+l+
     EHT99562.1 206 SLKTSATMDSMKSDMGGAATVTGALAMAIARGLKKRVKLYLCCADNMVSSNAFKLGDIIRYRNGKSVEVMNTDAEGRLVLADGLIDAS-EQNPTLL 300
                    ************************9999999********************************************************5.78***** PP

                    EEEE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSST.HHHHHHHHHHTTSSE.CG.EEEE CS
  Peptidase_M17 191 vdvATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrra.gaitAalFLkefvke.tp.WaHl 283
                    +d+ATLTga+++a+G+++++lf+ dd la++++ ++ +++e +wrlpl+e ++++l s++aDl+n+++  ++ ga+ Aa+FL+ fv++ ++ W+H+
     EHT99562.1 301 IDAATLTGAAKTAVGNDYHALFTFDDVLAQSVMGSAVSENEPFWRLPLAEFHRSHLPSNFADLNNIASPAHSaGASSAAAFLSYFVSHyQQgWLHI 396
                    *************************************************88****************986666*************664336**** PP

                    E-TTTTES.BTTB.S..EE--TTHHHH CS
  Peptidase_M17 284 DiagtalkekealkkekgatGvgvrtL 310
                    D+++t   +++  + ++gatG gvrt+
     EHT99562.1 397 DCSATYR-KSAVDQWSAGATGLGVRTI 422
                    ****974.334333338********98 PP

>> DUF3663  Peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.3   3.2e-40   2.9e-36       1      77 []       6      82 ..       6      82 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 3.2e-40
                EEEEEESS---GGG-TT-SEEE-SS-EEEE--SS-HHHHHHHHHHHHHHTT--EEEE-SS---HHHHHHHHHHH--T CS
     DUF3663  1 msvtLseqaaaaaWgekAllsfneegatihllekdelraiqrAaRkldgqgikeveLaGegWdlesqWaFaqGfrta 77
                m++tLs+q+a+a+Wg+kAlls ne+g+t+hl e+d+l +iqrAaRkldgqgi++v+L+GegW+le++WaF+qG+r++
  EHT99562.1  6 MNITLSNQPADARWGDKALLSSNENGMTVHLREADALMSIQRAARKLDGQGIRHVALTGEGWHLEQCWAFWQGYRSP 82
                99************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3644.67
//
Query:       EHT99563.1  [L=386]
Description: cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-85  287.2   0.0      2e-85  287.0   0.0    1.1  1  Aminotran_5      Aminotransferase class-V
    2.7e-05   23.6   0.0      3e-05   23.5   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00085   18.0   0.0     0.0013   17.4   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.055   12.8   0.2      0.081   12.2   0.2    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.0   0.0   4.5e-89     2e-85       1     370 [.       5     368 ..       5     369 .. 0.95

  Alignments for each domain:
  == domain 1  score: 287.0 bits;  conditional E-value: 4.5e-89
                  EEEBTTTS----HHHHHHHHHHHH..CTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyyt..dynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvte 95 
                  iyld+aAtt+  ++V  ++++++t     +n+ +  h++g++a +av+ ar++vael+na+   ei+ftsG+te+ nl+++++a+  +++g++iv+++
   EHT99563.1   5 IYLDYAATTPADPRVASKMMQFLTldGTFGNPASRSHRFGWQAEEAVDVARNQVAELVNADP-REIVFTSGATESDNLAIKGAAHFhQSRGKHIVTSV 101
                  8*********************9733589********************************7.********************9999*********** PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTES CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvD 193
                  +eh+a + ++ +l+ r+g+++++++  ++g++ +d+l+++l+++t lv+i+hv+n++G+iq+++++g+l++++g+l++vDa+q+vg+  id+++l vD
   EHT99563.1 102 TEHKAVIDTCLQLE-REGFEITWLTPAANGLIAPDDLRAALRDDTVLVSIMHVNNEIGVIQDIAALGALCRERGILFHVDATQSVGKLAIDLAELPVD 198
                  *************8.89********************************************************************************* PP

                  EEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 194 flafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerl 291
                  +++fsghK++gP+GiG+lyvr++   ++     gg+       +e+        +++GT +v +i+g+g+a ++ + +  e++ ++   l+++l  ++
   EHT99563.1 199 LMSFSGHKVYGPKGIGALYVRRKPRIQIDAQIHGGG-------HERN-------MRSGTLPVHQIVGMGEAYRIAKTVREEEM-ARLSLLRDKLWHGI 281
                  ****************************77777777.......5666.......899******************77777766.5667899******* PP

                  CTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHH CS
  Aminotran_5 292 kslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdr 370
                  ++ +gv+++g d ++  a+i++++f++v+ e + ++L++   a++sG++c+    +p+++++al        +++R+Sl++ +teee+d+
   EHT99563.1 282 RETGGVTVNG-DLQHSCANILNVSFADVEGESLIMALKD--LALSSGSACTsaslEPSYVLRALGlneelahSSLRFSLGRFTTEEEIDY 368
                  ********99.899*******************999988..**********9999999888888888*********************95 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.7e-09     3e-05      34     201 ..      51     209 ..      44     383 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.7e-09
                      HHHHHHHHHHHTT-S..EEEEES-HHHHHHHHH....HHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S CS
  Beta_elim_lyase  34 vnrLedavaelfgke..aalfvpqGtaAnsill....killqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikev 121
                      v +  ++vael+ ++   ++f+   t ++++++      +  rg+ ++ + + h     t    e +g + + l+ +++G + +++l+aa+++ 
       EHT99563.1  51 VDVARNQVAELVNADprEIVFTSGATESDNLAIkgaaHFHQSRGKHIVTSVTEHKAVIDTCLQLEREGFEITWLTPAANGLIAPDDLRAALRD- 143
                      5667788888888876578899999********885555668889999998888777666666699**********999*************9. PP

                      -TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT- CS
  Beta_elim_lyase 122 gaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdll 201
                       +    + l+s+   nn     +  ++ ++++ a+++++gi +h+D++  +    +l+ +++e+   vD +++s+ K  +
       EHT99563.1 144 -D----TVLVSIMHVNNE----IGVIQDIAALGALCRERGILFHVDATQSV---GKLAIDLAEL--PVDLMSFSGHKVYG 209
                      .4....789999999995....66899*******************97433...3334444444..48888888877543 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.8e-07    0.0013      54     196 ..      51     204 ..      17     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.8e-07
                      HHHHHHHHHHHHT-.SEEEEESSHHHHHHHHHH....TTS-T.TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCT CS
  Cys_Met_Meta_PP  54 rsvleeriaaLegg.eaalavssGmaAiaaail....allka.GdeivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaike 136
                      ++v  +++a+L ++  + ++++sG + +++  +    ++ ++ G++iv+s + ++   + + + l++ g e+++  +       +++l++a+++
       EHT99563.1  51 VDVARNQVAELVNAdPREIVFTSGATESDNLAIkgaaHFHQSrGKHIVTSVTEHKAVIDTCLQ-LEREGFEITWLTPaanglIAPDDLRAALRD 143
                      6677889999999966889999999866554431111343335*****999998888888876.4566666666655333335789******** PP

                      TEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT.TTS-GGGGT-SEEEEET CS
  Cys_Met_Meta_PP 137 ntklvylEtptnpllkvvDiekiaklakkagvlvvvDntfasp.llqrplklgaDivvhSa 196
                       t lv +  + n    + Di+++ +l++++g+l  vD+t + + l +   +l +D+   S+
       EHT99563.1 144 DTVLVSIMHVNNEIGVIQDIAALGALCRERGILFHVDATQSVGkLAIDLAELPVDLMSFSG 204
                      ***************************************9999344444456677766665 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   1.8e-05     0.081      95     150 ..     128     186 ..      57     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
                      TTSSB-GGGCGGG--TTE..EEEEEB-G.GGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1  95 dtynidpaaieaaitert..kaIlpVhl.yGqvadmdalkaiaakhglkvieDaAhAlG 150
                      +   i p++++aa+   t    I+ V+   G + d++al a++++ g+ +  Da +++G
       EHT99563.1 128 ANGLIAPDDLRAALRDDTvlVSIMHVNNeIGVIQDIAALGALCRERGILFHVDATQSVG 186
                      567899************6656666653479999***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2853.63
//
Query:       EHT99564.1  [L=165]
Description: Fe-S cluster-containing transcription factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-27   94.5   0.2    8.5e-27   93.3   0.1    1.6  2  Rrf2          Transcriptional regulator
     0.0087   15.7   0.0      0.017   14.8   0.0    1.6  1  HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.024   14.5   0.0    1.6  1  MarR_2        MarR family
      0.081   13.1   0.0       0.25   11.5   0.0    1.9  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
       0.15   11.6   0.0       0.72    9.5   0.0    1.9  2  HTH_47        winged helix-turn-helix


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.1   2.4e-30   8.5e-27       1      83 []       1      83 [.       1      83 [. 0.99
   2 ?   -2.4   0.0       1.7   6.3e+03      23      23 ..     132     132 ..     119     147 .. 0.50

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 2.4e-30
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvrav 83
                M+l+sk++ya++a+l+ a++++++pv +++i+erq+is syle+++++Lrk++lv svrG+gGGy L k+++ I +++v++av
  EHT99564.1  1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHNLVSSVRGPGGGYLLGKEASAIAVGEVITAV 83
                9*******************************************************************************997 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                 C CS
        Rrf2  23 e 23 
                 +
  EHT99564.1 132 N 132
                 1 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.7e-06     0.017      21      67 ..      23      69 ..       2      77 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.7e-06
  HrcA_DNA-bdg 21 kravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPkGGYkPtl 67
                  + +v   +i e  +    ++   ++ L+  +Lv++v GP GGY    
    EHT99564.1 23 QGPVPLADISERQGISLSYLEQLFSRLRKHNLVSSVRGPGGGYLLGK 69
                  55666677777777777788888999*****************7655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.6e-06     0.024      14      58 ..      19      62 ..      10      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.6e-06
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2 14 LgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpe 58
                L+ + g+ +  +++ +r g+s s++ ++  rL ++ Lv  ++gp+
  EHT99564.1 19 LHSHQGP-VPLADISERQGISLSYLEQLFSRLRKHNLVSSVRGPG 62
                6666666.9*****************************9999875 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     7e-05      0.25       6      31 ..      23      48 ..      14      49 .. 0.91
   2 ?   -2.7   0.0         2     7e+03       9      17 ..     133     141 ..     131     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
                SCT--HHHHHHHTTSSHHHHHHHHHH CS
    HTH_AraC  6 stnltiediAdelgfSrsyFsrlFkk 31
                + +  ++di++  g+S sy+ +lF++
  EHT99564.1 23 QGPVPLADISERQGISLSYLEQLFSR 48
                56789*******************87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
                 --HHHHHHH CS
    HTH_AraC   9 ltiediAde 17 
                   i d+Ad 
  EHT99564.1 133 QEILDVADR 141
                 568889875 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0002      0.72      32      77 ..      10      56 ..       2      57 .. 0.84
   2 ?   -0.6   0.0      0.27   9.7e+02      47      59 ..     133     145 ..     117     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0002
                -HHHHHHH.HHH-EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 32 aemallwv.LnlaDGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                a+ a+l+v L    G   L di+er g++   ++++  +L++++l++
  EHT99564.1 10 AVTAMLDVaLHSHQGPVPLADISERQGISLSYLEQLFSRLRKHNLVS 56
                567888874666689999**************************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.27
                 EEHHHHHHHHT-- CS
      HTH_47  47 rsLldiAeriglp 59 
                 +++ld+A+r +++
  EHT99564.1 133 QEILDVADRQNAN 145
                 6789999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1209.71
//
Query:       EHT99565.1  [L=249]
Description: tRNA:Cm32/Um32 methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-34  117.5   0.0    6.5e-34  117.1   0.0    1.1  1  SpoU_methylase   SpoU rRNA Methylase family
    4.5e-05   23.4   0.0     0.0082   16.0   0.0    2.2  2  Methyltrn_RNA_4  SAM-dependent RNA methyltransferase
  ------ inclusion threshold ------
      0.039   14.6   0.0         10    6.9   0.0    2.3  2  DUF573           Protein of unknown function, DUF573
      0.067   13.3   0.0       0.14   12.2   0.0    1.5  2  DUF531           Protein of unknown function (DUF531)


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   1.4e-37   6.5e-34       2     142 .]       5     154 ..       4     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 1.4e-37
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEESTT-SEGC....CS CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatslkgksls....ei 91 
                     +++vlve+++ gN+G++aR++k++g+++l+lv+p  +   +++a+ +aaga +v+  +k+vdsl++a++ +  +    v+ts++++sl     + 
      EHT99565.1   5 IRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK--PDSQAISLAAGASDVIGeAKIVDSLDDAIAGCSLV----VGTSARSRSLPwpmlDS 93 
                     79*******************************9987..77899***********99****************9....99999888877644411 PP

                     ......HHH.....TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  92 ......dlk.....ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                           +        +valvfG+E+ Gl+n++l++++++v I  ++e++SLN+a+Av+i++y
      EHT99565.1  94 recglkS-IeearqAPVALVFGRERVGLTNDELQKCHYHVAIQANPEYSSLNLAMAVQIIAY 154
                     4444441.045566**********************************************98 PP

>> Methyltrn_RNA_4  SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0034        15      28      50 ..      18      40 ..       4      50 .. 0.83
   2 !   16.0   0.0   1.8e-06    0.0082     100     176 ..      71     152 ..      44     156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0034
                     HHHHHHHHHHTT-SEEEEE---H CS
  Methyltrn_RNA_4 28 lhDiaRsartygvkkyyvvtple 50
                     +  +aR+ +t g++++y+v+pl 
       EHT99565.1 18 MGSVARAMKTMGLTNLYLVNPLV 40
                     5679*****************85 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.8e-06
                      SS--EEEE--SS--SS-B-HHH.....HHHHHHH--S-EEEEE--T.T---HHHHTT-SEEB--TTTTSS-----HHHHHHHH CS
  Methyltrn_RNA_4 100 gkkplvvatsArkkentvsyee.....lrelleeeekpvlllfGtg.wGlaeevlekadyiLepirgaseynHLsvrsAvaii 176
                          lvv tsAr+++    + +     l+++ e ++ pv l+fG    Gl+++ l+k++y + +i+++ ey  L    Av ii
       EHT99565.1  71 AGCSLVVGTSARSRSLPWPMLDsrecgLKSIEEARQAPVALVFGRErVGLTNDELQKCHYHV-AIQANPEYSSLNLAMAVQII 152
                      4556889999996554444433000113344466799*******8538************97.6****************998 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0053        24      28      61 ..     177     218 ..     166     222 .. 0.79
   2 ?    6.9   0.0    0.0023        10       7      26 ..     223     242 ..     218     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0053
      DUF573  28 pk...sdldafyeavksslss.....dvsksqlseKlrrLkk 61 
                 p+   +dl+ fy+++++ +       +++  q+++KlrrL +
  EHT99565.1 177 PYplvDDLERFYQHMEQMMLEsgfirEANPGQVMSKLRRLYT 218
                 4445699999**998887776677769999*********965 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0023
      DUF573   7 eeDEielLqglldfksktgt 26 
                 e+DE+++L+g+l++ +k++ 
  EHT99565.1 223 ERDELNILRGMLASFEKRKG 242
                 79**********98776665 PP

>> DUF531  Protein of unknown function (DUF531)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.4   1.1e+04       1      26 [.      25      50 ..      25      52 .. 0.72
   2 ?   12.2   0.0   3.2e-05      0.14     117     167 ..     104     156 ..      87     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.4
      DUF531  1 mltlglvntYDkkklheaHkRaiARa 26
                m t+gl n Y  + l      ai  a
  EHT99565.1 25 MKTMGLTNLYLVNPLVKPDSQAISLA 50
                56899999998777777777777655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.2e-05
      DUF531 117 lrkksvllliGlGrkGlPkellklakyhldit..ekgvslEtctAigaiaavi 167
                 +r+ +v l++G  r Gl ++ l++++yh+ i    +  sl+ + A+ +ia  +
  EHT99565.1 104 ARQAPVALVFGRERVGLTNDELQKCHYHVAIQanPEYSSLNLAMAVQIIAYEV 156
                 5899*************************998434567999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1981.21
//
Query:       EHT99566.1  [L=267]
Description: inositol monophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-74  248.8   0.0    7.5e-74  248.7   0.0    1.0  1  Inositol_P  Inositol monophosphatase family
  ------ inclusion threshold ------
       0.14   11.6   0.0       0.25   10.8   0.0    1.5  1  FBPase      Fructose-1-6-bisphosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.7   0.0   8.3e-78   7.5e-74       3     267 ..       2     258 ..       1     263 [. 0.95

  Alignments for each domain:
  == domain 1  score: 248.7 bits;  conditional E-value: 8.3e-78
                 HHHHHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHH CS
  Inositol_P   3 eevtkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvr 101
                 ++++++av++a+kag++++++++ ++ ++e+++ +g++d+vt++d+++e+li+e++++++p+h+i++ee+++ +     ++++  w++DP+DGT+nF++
  EHT99566.1   2 HPMLNIAVRAARKAGNLIAKNYE-TPDAVEASQ-KGSNDFVTNVDRDAERLIIEVIRKSYPKHTIITEESGELEG----EDQDIQWVIDPLDGTTNFIK 94 
                 7899******************9.777777777.8*************************************999....8888**************** PP

                 T-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHH CS
  Inositol_P 102 gipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalkl 200
                 + p++ Vsi++  +g+  ++v+++P+ ++l+sa++g+Ga lng++l+ s a ++++ +l+t f+++ +++ +  + +  +++  +a  +r+ gs+al+l
  EHT99566.1  95 RLPHFSVSIAVRIKGRTEVAVVYDPMRNELFSAVRGQGAQLNGYRLRGSIARDLDGTILATGFPFKLKQHAPAYMNIMTKLFTQCAD-FRRTGSAALDL 192
                 *************************************************************************99999999999999.*********** PP

                 HHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSCSSSTTSSEEEEESCHHHHHHHHHHH CS
  Inositol_P 201 aavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakgegrlllargiiaanqkelaellaaav 267
                 a+va+G++d y e+g +k+WD+AAGe++++eaGG vtd++g++ +l +++i+a+n+++ ++ll + +
  EHT99566.1 193 AYVAAGRVDGYFEIG-LKPWDFAAGELLVREAGGLVTDFTGNHGYLHSGNIVAGNPRVVKALLSSMR 258
                 ***************.***************************************888888766555 PP

>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.7e-05      0.25      59     116 ..      38      91 ..      10     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.7e-05
      FBPase  59 deqkklDvladeiliealkaseevkvlvSEEeeelivlerekegkyvvafDPlDGSSn 116
                 d + ++D  a+ ++ie++++s    +++ EE+ el+      +  +  ++DPlDG  n
  EHT99566.1  38 DFVTNVDRDAERLIIEVIRKSYPKHTIITEESGELEGE----DQDIQWVIDPLDGTTN 91 
                 667899999************************98643....55677789*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1954.44
//
Query:       EHT99567.1  [L=337]
Description: hypothetical protein CKS_1515 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00033   19.7   0.1    0.00046   19.2   0.1    1.2  1  LMBR1            LMBR1-like membrane protein
  ------ inclusion threshold ------
      0.012   15.3   3.9      0.012   15.3   3.9    2.7  3  Virul_fac_BrkB   Virulence factor BrkB
      0.027   15.0   6.9      0.027   15.0   6.9    2.6  2  DUF883           Bacterial protein of unknown function (DUF88
      0.029   14.5  17.8      0.083   13.1  15.3    2.5  2  DUF3792          Protein of unknown function (DUF3792)
      0.053   13.2   3.0      0.097   12.4   3.0    1.3  1  DUF2225          Uncharacterized protein conserved in bacteri
      0.067   13.3   0.2       0.19   11.9   0.1    1.7  2  LPD38            Large polyvalent protein associated domain 3
      0.068   12.3   8.9       0.09   11.9   8.9    1.1  1  LAP1C            Lamina-associated polypeptide 1C (LAP1C)
       0.45   10.2   6.6       0.23   11.1   3.1    2.1  2  TerC             Integral membrane protein TerC family
       0.64    9.6   4.0        1.1    8.8   4.0    1.4  1  DFF40            DNA fragmentation factor 40 kDa
       0.99    9.2   8.3        1.6    8.6   8.2    1.4  1  Peptidase_M4_C   Thermolysin metallopeptidase, alpha-helical 
        1.5    8.5  20.4         42    3.8  20.4    2.1  1  TACC_C           Transforming acidic coiled-coil-containing p
          2    8.6   8.0          1    9.5   5.3    1.9  2  LEA_4            Late embryogenesis abundant protein
        3.3    5.5   9.9        4.1    5.2   9.9    1.1  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        3.3    7.3   9.1       0.35   10.5   4.0    2.0  2  DUF2368          Uncharacterised conserved protein (DUF2368)
        3.8    7.0   7.0       0.32   10.4   0.3    2.5  3  DUF1129          Protein of unknown function (DUF1129)
        4.1    7.0  10.9        6.3    6.4  10.9    1.3  1  GET2             GET complex subunit GET2
        4.2    7.5  26.8       0.99    9.5  10.2    2.4  2  DivIVA           DivIVA protein
        6.6    6.7   8.1        3.4    7.6   4.1    2.1  2  TetR_C_13        Tetracyclin repressor-like, C-terminal domai
        7.4    6.7  28.1       0.26   11.4   6.4    2.2  2  DHR10            Designed helical repeat protein 10 domain
        8.7    4.2   9.6         11    3.8   9.6    1.0  1  Dicty_REP        Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   5.2e-07   0.00046     131     361 ..      30     319 ..      22     322 .. 0.49

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.2e-07
       LMBR1 131 llllvivlglliyvliil............................................................qklsllsiksllpilislant 169
                 ++++ ++++l+i +l++l                                                             ++s+  i+ +l++  + +++
  EHT99567.1  30 AVFAGVICALIIHILLTLlgtaigattidplqegnpfkhlgtgalvwtaiemllaivagayvagrlaqregalhglliFGISTV-ITIYLAVSLA-SSV 126
                 566666666666666666677777777777777777777777777777777777777777777777777777765533333333.2233333332.344 PP

       LMBR1 170 wGlvllilllGyGlvelPrslwreiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilk.........kvPeeia 259
                 +G    +  lG G+ ++  ++    ++ +  ++ k ++++ ++n  +++++rele +l++  k + + ++ +  ++ ++e  +         + P+++ 
  EHT99567.1 127 LGGA--MNILGTGFQAVGQGISA--AAPSVTQMAKDKLQENNIN--LNDMQRELETTLRQTGKPELQPEKLK--QDANNEAQNaenqanntaNHPQTAD 217
                 4544..44568888888666655..6677777777777777777..66666777755555443322222221..2222222222222223335555555 PP

       LMBR1 260 eklks...............nenkteeslaklekqlikalqkrertekqwkrllekalelediiknksskekefkssessrrgefakqg..klkltptl 341
                 ++l++                + +++++++k          ++ ++ ++ ++++++a   e+  +++ +k +e+k++    ++++ + g    k t + 
  EHT99567.1 218 TDLANwfkgvidrhadtlqaADREALKNIIKA---------RTGKSDQEAEQIVNQA---EQSYQQAMQKYQELKQQ---AEQKAREAGeqAAKATAKA 301
                 55555776654433222222222233333333.........3444444555555555...22233333333333333...3333333332233344444 PP

       LMBR1 342 eyywaklllplvllilsiil 361
                 ++y    +  ++  +l++++
  EHT99567.1 302 SWYAF--FILIIEAVLAGVM 319
                 44444..4434666666665 PP

>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.5      0.38   3.4e+02     183     209 ..      22      48 ..      18      57 .. 0.61
   2 ?   15.3   3.9   1.3e-05     0.012      64     150 ..      57     142 ..      50     157 .. 0.77
   3 ?   -0.3   0.1      0.76   6.8e+02      37      71 ..     254     287 ..     243     330 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.38
  Virul_fac_BrkB 183 pnvkvrlraalpGallaallwllvkil 209
                     p ++ +++a++ G + a ++ +l+++l
      EHT99567.1  22 PLKRISWSAVFAGVICALIIHILLTLL 48 
                     555666666666666666555555444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.3e-05
  Virul_fac_BrkB  64 lqrllnqaslgllglavllwsasggvsalrralnkiygveesrsflrkrllsllllllllvllllslvlsvflqslllasa..pllglg 150
                     ++ l++++ +  lg+++l+w+a+ ++ a+ +++  + +  + r+   + ll +++ +++ + l++sl+ sv++++  ++++   + ++g
      EHT99567.1  57 IDPLQEGNPFKHLGTGALVWTAIEMLLAIVAGAYVAGRLAQ-REGALHGLLIFGISTVITIYLAVSLASSVLGGA--MNILgtGFQAVG 142
                     5667777788899********************99966666.67888888899********************99..333333333333 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.76
  Virul_fac_BrkB  37 ddelqeqlldllaevlpegaaevvedilqrllnqa 71 
                     +d+ +eq+++++++  ++ a++  +++ q+++++a
      EHT99567.1 254 SDQEAEQIVNQAEQSYQQ-AMQKYQELKQQAEQKA 287
                     667777777777777443.4444444444443333 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.8       0.2   1.8e+02       7      53 ..     167     212 ..     158     232 .. 0.76
   2 ?   15.0   6.9   3.1e-05     0.027      11      79 ..     240     308 ..     229     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.2
      DUF883   7 leslladleellkeaadeageeaeelRerleerlerarerlrdaeea 53 
                 l+++  +le  l+++++  + + e+l++ +++++++a +++++++++
  EHT99567.1 167 LNDMQRELETTLRQTGK-PELQPEKLKQDANNEAQNAENQANNTANH 212
                 56667778888888875.67778889999999999988888888765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.1e-05
      DUF883  11 ladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGi 79 
                 ++ l++++k+   ++++eae++ +++e++ ++a ++ ++++++++++a+ea e+a ++  +  w a  i
  EHT99567.1 240 REALKNIIKARTGKSDQEAEQIVNQAEQSYQQAMQKYQELKQQAEQKAREAGEQAAKATAKASWYAFFI 308
                 56788999999********************************************99988888877655 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  15.3   9.2e-05     0.083       2      88 ..      28     124 ..      27     146 .. 0.67
   2 ?    0.2   0.0      0.89     8e+02      38     114 ..     302     319 ..     293     330 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.2e-05
     DUF3792   2 ikavlkgllialvitlilllilall...........lyftslsekvlsililiililsvfigGflagkkakkkgllnGllvGllyfli.llllsllikk 88 
                 ++av+ g+++al+i ++l+l+ +++             f +l   +l +++ i ++l++++g+++ag+ a++ g l+Gll+  + ++i ++l  +l+ +
  EHT99567.1  28 WSAVFAGVICALIIHILLTLLGTAIgattidplqegNPFKHLGTGAL-VWTAIEMLLAIVAGAYVAGRLAQREGALHGLLIFGISTVItIYLAVSLA-S 124
                 57899999999999999999999996644554333333334444444.3445567788999*****************9987776666243333333.2 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.89
     DUF3792  38 sililiililsvfigGflagkkakkkgllnGllvGllyflillllsllikksgsafslkllikllllllagaiGGii 114
                 s+ +++ili+ ++++G+                                                           +
  EHT99567.1 302 SWYAFFILIIEAVLAGV-----------------------------------------------------------M 319
                 23333333333333332...........................................................2 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.0   0.00011     0.097      64     126 ..     233     303 ..     227     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
     DUF2225  64 eklskeekeklkekiskkwksrdfskertldeaiesYkLallcyelkkekks........kkAklalrlAW 126
                 ++l++ ++e lk+ i+++  + d  +e  +++a +sY+ a++ y+  k++          + Ak   +++W
  EHT99567.1 233 DTLQAADREALKNIIKARTGKSDQEAEQIVNQAEQSYQQAMQKYQELKQQAEqkareageQAAKATAKASW 303
                 6789999**************************************99999884555555555555666666 PP

>> LPD38  Large polyvalent protein associated domain 38
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.5   1.4e+03      85     111 ..     148     173 ..     119     240 .. 0.54
   2 ?   11.9   0.1   0.00021      0.19      71     162 ..     229     324 ..     189     329 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.5
       LPD38  85 lkPlielatnnkfftGgpIvpeelenl 111
                 ++P ++ ++ ++  ++++I   ++++ 
  EHT99567.1 148 AAPSVTQMA-KDKLQENNINLNDMQRE 173
                 444444444.44444444444333333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00021
       LPD38  71 gssgsalqsliptvlkPlielatnnkfftGgpIvpe.e...lenlppeeqykestselakaigealneatyekgaidvsPekldyllrgytGglgr 162
                 +  +++lq +   +lk +i + t +++    +Iv++ e   ++++++++  k ++++ a+++ge+  +at+++ +  +    ++++l g+ G++gr
  EHT99567.1 229 DRHADTLQAADREALKNIIKARTGKSDQEAEQIVNQaEqsyQQAMQKYQELKQQAEQKAREAGEQAAKATAKASWYAFFILIIEAVLAGVMGMVGR 324
                 56677888899999*********9999999******557776777777777778999999999999999988888899999999999999999998 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   8.9    0.0001      0.09      58     228 ..     161     324 ..     137     335 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXX..XXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX......XXXXXXXXX CS
       LAP1C  58 seqevnlseepkdetEeedsessqsgeeghklsseslgeekldsedsvsssdktgradaqleessaalseeasdrtaasqepsaadsqeaqssghskae 156
                 +e+++nl++ +  e E+  +++ + + + +kl+ +  +e +  +++  ++ ++ + ad+ l + +  + + ++d+ +a  ++     ++  + ++ k++
  EHT99567.1 161 QENNINLNDMQ-RELETTLRQTGKPELQPEKLKQDANNEAQNAENQANNTANHPQTADTDLANWFKGVIDRHADTLQAADREAL---KNIIKARTGKSD 255
                 22222222222.222222222222222222222222222222222222233333344444444444444444444333333333...233333334444 PP

                 XXXXXXXXXXXX..XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
       LAP1C 157 qeeqdtlrrtrllvpeaeshqqetelleeskesaqdtlrkskkksfvkyksilllllvvavlllsvlsyyss 228
                 qe ++++ ++    ++ +  +q+ ++l+++ e++   ++++  k + k +++++ +l++ ++l +v+ ++  
  EHT99567.1 256 QEAEQIVNQAE---QSYQQAMQKYQELKQQAEQKAREAGEQAAKATAKASWYAFFILIIEAVLAGVMGMVGR 324
                 44444444433...3333345677777777775555555566677778888888889999998887766544 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.1   0.00025      0.23      33     118 ..      30     122 ..      24     131 .. 0.79
   2 ?   -1.4   0.1       1.7   1.6e+03      94     105 ..     294     309 ..     264     322 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
        TerC  33 alllGilgAlvlRillillavallelf.......dlilligglfLlytavkellekrle.nklvkeekkkkkktkstllavviqielaDlvfsl 118
                 a++ G++ Al++ ill+ll++a+ +         + ++ +g   L++ta+++ll+ + + + +    ++++ + +  l+  + +++++ l+ sl
  EHT99567.1  30 AVFAGVICALIIHILLTLLGTAIGATTidplqegNPFKHLGTGALVWTAIEMLLAIV-AgAYVAGRLAQREGALHGLLIFGISTVITIYLAVSL 122
                 899********************99944555667999****************9765.436666677777777777777777777777666666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
        TerC  94 kkkktkst....llav 105
                   k+t++     ++  
  EHT99567.1 294 AAKATAKAswyaFFIL 309
                 2222222222232222 PP

>> DFF40  DNA fragmentation factor 40 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.0    0.0012       1.1      20      99 ..     202     281 ..     182     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
       DFF40  20 adllkaldekieketreedeeWFeGleerf.ktkeevmkrraqsRirgYlkkvkeeltkvknakarellkevleelrelLk 99 
                 a+++ +++ +  + + ++ ++WF+G+ +r   t +++ ++  ++ i++ + k+++e++++  ++a++ +++ +++ +el +
  EHT99567.1 202 AENQANNTANHPQTADTDLANWFKGVIDRHaDTLQAADREALKNIIKARTGKSDQEAEQI-VNQAEQSYQQAMQKYQELKQ 281
                 222222333334445556689****86666488888888999999**************9.55666777777777766544 PP

>> Peptidase_M4_C  Thermolysin metallopeptidase, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.2    0.0018       1.6      77     165 ..     215     305 ..     152     308 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
  Peptidase_M4_C  77 eednggvHlnSgilnkafyllaegg....tktevkvtgigiekaakiyyraltkyltsttdFaeartaviqaAkdlygaksaevkavkkAfka 165
                     ++d     +  g++ + + +l        ++  ++ tg + ++a++i+ +a+++y ++  +++e+++++ q+A++  g ++a++++ k+++ a
      EHT99567.1 215 TADTDLANWFKGVIDRHADTLQAADrealKNIIKARTGKSDQEAEQIVNQAEQSYQQAMQKYQELKQQAEQKAREA-G-EQAAKATAKASWYA 305
                     45555555555666655555544445665556667899**************************************.6.55666677888876 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  20.4     0.047        42      32     158 ..     158     301 ..     152     305 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.047
      TACC_C  32 eelkkenqemkkivaefektiaqlieekqkqkelakkeiqkvleekeqlladlnsveksfsdlfkryekqkev................leg.ykknee 113
                 ++l+++n +++++  e e+t+ q+ + + + ++l++   +++++ ++q+++  n+ +++ +dl + ++   +                 ++    k ++
  EHT99567.1 158 DKLQENNINLNDMQRELETTLRQTGKPELQPEKLKQDANNEAQNAENQANNTANHPQTADTDLANWFKGVIDRhadtlqaadrealkniIKArTGKSDQ 256
                 678888889999999999999999888888888888888888888888888777777776666655543322211111212211111112210113333 PP

      TACC_C 114 slkkcaeeylarvkkeeqRYqaLkahaeekLekAneeiaqvrska 158
                    + +++  +  +++ q+Yq+Lk++ae+k ++A e+ a+  +ka
  EHT99567.1 257 EAEQIVNQAEQSYQQAMQKYQELKQQAEQKAREAGEQAAKATAKA 301
                 444455555566667778999999999999999999999988776 PP

>> LEA_4  Late embryogenesis abundant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.2   3.7e+03      15      20 ..     156     161 ..     152     163 .. 0.46
   2 ?    9.5   5.3    0.0012         1       8      38 ..     265     295 ..     259     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.2
       LEA_4  15 taeKag 20 
                 +++K++
  EHT99567.1 156 AKDKLQ 161
                 333333 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0012
       LEA_4   8 akeaKDataeKageyKDyAaeKAgeaKDkaa 38 
                 a ++   +++K +e K  A++KA+ea + aa
  EHT99567.1 265 AEQSYQQAMQKYQELKQQAEQKAREAGEQAA 295
                 6666678******************988776 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   9.9    0.0046       4.1      10     142 ..     159     295 ..     151     329 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0046
  V_ATPase_I  10 qfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeea.eesleapeekeldeleeelekleeelkelnen.leklkkel..nelve 104
                 ++++ n ++n +qr+  + +r++ + e + + l++  ++++++  ++ ++ ++++++++++  +  +  ++++ + l+  +++ l+++ k +  ++ +e
  EHT99567.1 159 KLQENNINLNDMQRELETTLRQTGKPELQPEKLKQDANNEAQNAENQANNtANHPQTADTDLANWFKGVIDRHADTLQAADREaLKNIIKARtgKSDQE 257
                 5678899999***********************999998665555554442444555555555556677777888887776441455544431145678 PP

  V_ATPase_I 105 lkavlekakefleeeeeeeeeeeseeeeeekeeeeeee 142
                 +++++++a++ ++++ ++ +e ++++e++++e+ e++ 
  EHT99567.1 258 AEQIVNQAEQSYQQAMQKYQELKQQAEQKAREAGEQAA 295
                 88899998888876633333322222222111111111 PP

>> DUF2368  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       4.2   3.8e+03      21      42 ..     154     175 ..     146     183 .. 0.62
   2 ?   10.5   4.0   0.00039      0.35      10      73 ..     258     322 ..     249     332 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.2
     DUF2368  21 eemqklqlerqlamqnlmrerq 42 
                 ++ ++  +e+++++++ +re +
  EHT99567.1 154 QMAKDKLQENNINLNDMQRELE 175
                 4444455567777777766654 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00039
     DUF2368  10 eenlkknqefleemqklqlerqlamqnlmrerqmAlqiakarellkwlasfyalavvll..aagai 73 
                  e++  nq+  + +q +q  ++l+ q ++++r++  q aka  +  w+a f++++ ++l  ++g++
  EHT99567.1 258 AEQIV-NQAEQSYQQAMQKYQELKQQAEQKAREAGEQAAKATAKASWYAFFILIIEAVLagVMGMV 322
                 34444.55555666666777889****************************998654440044444 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       2.1   1.9e+03     143     166 ..      25      48 ..      22      76 .. 0.63
   2 ?   -1.4   0.7       1.5   1.4e+03     140     163 ..      95     118 ..      38     141 .. 0.64
   3 ?   10.4   0.3   0.00036      0.32      48     109 ..     265     329 ..     241     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.1
     DUF1129 143 rpplwkrllilllllvvwlvlftl 166
                 r+++  +++ ++ +l++ ++l++l
  EHT99567.1  25 RISWSAVFAGVICALIIHILLTLL 48 
                 556665555555555444444333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
     DUF1129 140 kkkrpplwkrllilllllvvwlvl 163
                   +r+++++ lli  +++v+ + l
  EHT99567.1  95 LAQREGALHGLLIFGISTVITIYL 118
                 456666666666655555543332 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00036
     DUF1129  48 ArqLygtptekaeellekkkkakkesk...enpwlmalDnsLlllalfallfgilalfskkkqta 109
                 A+q y++  +k++el+++ +++++e+     ++   a   ++++l++ a+l g+++++++ +q  
  EHT99567.1 265 AEQSYQQAMQKYQELKQQAEQKAREAGeqaAKATAKASWYAFFILIIEAVLAGVMGMVGRRTQPR 329
                 6777888888888888888777777774443333334445678899999*********9988865 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  10.9     0.007       6.3      64     181 ..     177     282 ..     126     290 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.007
        GET2  64 sssasehddpeiediseiavkpkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakseeetsss 162
                 + +++ + +++ e+ ++ a++++++a++++++++++  ++++ +l++ +k+++  +     ++ q a+    + +++++k      +g+ ++e+e+  +
  EHT99567.1 177 TLRQTGKPELQPEKLKQDANNEAQNAENQANNTANHP-QTADTDLANWFKGVIDRH----ADTLQAADR---EALKNIIKAR----TGKSDQEAEQIVN 263
                 2222233444555555666666666666666666665.555569999999999883....112222222...3455455444....4445669999*** PP

        GET2 163 peeaeyqqqlleyhkyqvk 181
                 ++e++yqq++++y++ +++
  EHT99567.1 264 QAEQSYQQAMQKYQELKQQ 282
                 **************98876 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   8.5     0.069        62      44     101 ..     156     213 ..     149     230 .. 0.81
   2 ?    9.5  10.2    0.0011      0.99      76     125 ..     232     285 ..     226     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.069
                 HHHHHHCCCCTXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  44 lkekvkeleeklkeyk.eleetLkktlvvaqetaeevkanakkeaeliikeAekkaeki 101
                  k+k++e++ +l++++ ele+tL++t    +   e++k+ a++ea++  ++A+++a++ 
  EHT99567.1 156 AKDKLQENNINLNDMQrELETTLRQT-GKPELQPEKLKQDANNEAQNAENQANNTANHP 213
                 57888888888888752677778877.4778889********************99875 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  76 aeevkanakkeaeliik....eAekkaekiveeaeeeakkiaeeieelkrqarl 125
                 a+ ++a+ ++  ++iik    +++++ae+iv++ae++ ++++++++elk+qa++
  EHT99567.1 232 ADTLQAADREALKNIIKartgKSDQEAEQIVNQAEQSYQQAMQKYQELKQQAEQ 285
                 55555555555567776333357899*************************987 PP

>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.94   8.4e+02      60      90 ..     195     227 ..     159     239 .. 0.59
   2 ?    7.6   4.1    0.0037       3.4      29      83 ..     252     307 ..     249     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.94
                 HHHHHH.CTTSS-TTS-HHHHHHHHHHHH.HHH CS
   TetR_C_13  60 cleeaq.eageiaadadaeelaeffwigW.eGA 90 
                 + +eaq ++++ ++ a++ + a+  + +W +G 
  EHT99567.1 195 ANNEAQnAENQANNTANHPQTADTDLANWfKGV 227
                 334444034455566666777777666663444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0037
                 HHHHHTGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS-HHH.HHHHH CS
   TetR_C_13  29 GnLgqEvaalpesfrerleevledwqkrvaacleeaqeageiaadadaee.laeff 83 
                 G   qE++++ ++ ++  +++++++q+  +++ ++a+eage aa+a a++ + +ff
  EHT99567.1 252 GKSDQEAEQIVNQAEQSYQQAMQKYQELKQQAEQKAREAGEQAAKATAKAsWYAFF 307
                 55679***********************************9988877665144444 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.4   0.00029      0.26      61     111 ..     155     205 ..     149     211 .. 0.93
   2 ?    1.2  13.8       0.4   3.5e+02      73     115 ..     255     297 ..     208     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
       DHR10  61 elrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaakar 111
                  ++d+l+e++i+l++++r+ e   rq  + e + e+l+++a++++++a+++
  EHT99567.1 155 MAKDKLQENNINLNDMQRELETTLRQTGKPELQPEKLKQDANNEAQNAENQ 205
                 679********************************************9986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.4
       DHR10  73 lrelerkeerlqrqlenaeeklerlreqaeekreaakarleel 115
                  +e e+   + ++  ++a +k++ l++qae+k+++a ++ +++
  EHT99567.1 255 DQEAEQIVNQAEQSYQQAMQKYQELKQQAEQKAREAGEQAAKA 297
                 467777778999999*******************999888776 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   9.6     0.013        11     233     349 ..     151     266 ..     139     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.013
   Dicty_REP 233 eqesiesentqrensqpskeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnisdseld 331
                 +++++  ++ q +n++ ++ + +  tt  +t   + q+ + k+ a ++ + +enqa++  ++ + +d+d  + f+  ++r+ + l+  + +  + + ++
  EHT99567.1 151 SVTQMAKDKLQENNINLNDMQRELETTLRQTGKPELQPEKLKQDANNEAQNAENQANNTANHPQTADTDLANWFKGVIDRHADTLQAADREALK-NIIK 248
                 4555566666666666666666666677777777888888899888888888888888888888889999*******************99999.7788 PP

   Dicty_REP 332 ddvnesispeekiisvsn 349
                   +++s ++ e+i+  ++
  EHT99567.1 249 ARTGKSDQEAEQIVNQAE 266
                 889999999999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3998  (0.222991); expected 358.6 (0.02)
Passed bias filter:                     1345  (0.0750181); expected 358.6 (0.02)
Passed Vit filter:                       203  (0.0113224); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.00u 0.37s 00:00:01.37 Elapsed: 00:00:00.54
# Mc/sec: 1879.29
//
Query:       EHT99568.1  [L=326]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-36  125.5  20.0    1.3e-22   80.5   5.6    2.3  2  NicO          High-affinity nickel-transport protein
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.023   14.0   0.0    1.5  1  Rsm22         Mitochondrial small ribosomal subunit Rsm22
       0.23   11.4  25.2        2.8    7.9  17.5    2.8  2  DsbD_2        Cytochrome C biogenesis protein transmembrane r
        3.2    7.5  19.9      0.064   13.0   7.4    3.1  3  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   5.6   2.9e-26   1.3e-22       3     129 ..      69     192 ..      67     195 .. 0.93
   2 !   56.0   6.0   8.4e-19   3.7e-15     142     278 ..     183     312 ..     171     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 2.9e-26
        NicO   3 vliglsflyGvrHAvdagHgkaiirklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrklr 101
                 +l + s +yG++HA+++gHgk +i +++ ++  +lk+++ l+l++sl+++ va++lv+++ +vl ++s +   +  ++e +s+llvi+l+++  +r + 
  EHT99568.1  69 SLLAFSLVYGILHALGPGHGKVVITTFLATHPAKLKTSMKLTLLASLLQGSVAIVLVTLMLVVLHTSSRQLHLSSFWLEKGSYLLVIALGIWTGYRAVN 167
                 67788999*****************************************************************************************99 PP

        NicO 102 klfrklerlgrapaaeleaalakrglls 129
                 +l r     + +pa ++ a++ ++++ +
  EHT99568.1 168 SLWRLF---RPKPAMNIRALHPHHHHDD 192
                 998554...5799999999999888755 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 8.4e-19
        NicO 142 swhmypvgflfglGfdtateiallaidpsealkgdsfdsilalpalfavGlrlcdgadivlmfaalnwaflggrklvyamsitgtsitvalliglivtl 240
                   h ++++      +d+  +++++ ++++ ++   +++ +++l++++++Glr+c+ga+++l+fa   + +l+g+++   m++ gt+ t++++  l+   
  EHT99568.1 183 ALHPHHHH------DDQCGCGHAHLPSAQ-QV-AGAVNVKTQLLVVLSMGLRPCSGAIMMLLFAKVIGVYLWGVLSAAVMAM-GTALTISAIGLLVQRS 272
                 44555666......89999**********.66.57899********************************************.**************** PP

        NicO 241 klvakkfalsgslwaaiisle..leivGavlvllfallll 278
                 + +a++++ + ++ ++++sl   l ++G v++++ + +l 
  EHT99568.1 273 RSLAQRLSANSHISDRARSLLplLALLGSVMLIVAGCALW 312
                 ************9999999989999999998888877665 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.2e-06     0.023     102     171 ..     118     188 ..      88     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.2e-06
       Rsm22 102 eeadLviisyvLleledesreklvknlWakaskilvivEeGtpaGfrrvleaReal.kaagfhivAPCPHe 171
                  ++ +v ++ +L  l+ +sr+  +   W +  ++l+++  G  +G+r v+ +   +  +  + i A  PH+
  EHT99568.1 118 GSVAIVLVTLMLVVLHTSSRQLHLSSFWLEKGSYLLVIALGIWTGYRAVNSLWRLFrPKPAMNIRALHPHH 188
                 34489999*******************************************99999534455666666664 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   9.4      0.12   5.2e+02      72     199 .]      16     160 ..       2     160 .. 0.57
   2 ?    7.9  17.5   0.00061       2.8     109     182 ..     205     277 ..      90     310 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.12
      DsbD_2  72 llgvllgllllllglklllkkkllklerlgkllsrllkklakkl.........kslasalllGllnGllpC.glvysalllalasgsaleGa.lvmlaF 159
                 l+ +++gl+ ++++++l + + ll+   ++k l+r +++l++++           la +l++G+l++l p  g v  + +la   +++ +++ l++la 
  EHT99568.1  16 LAVFMVGLVTAVSAIWLYWPQILLQSVLWQKILNREMTQLLQQVaehphraglSLLAFSLVYGILHALGPGhGKVVITTFLATHPAKLKTSMkLTLLAS 114
                 555667777777777777776666666666666666666666665555765545556678899999999965666555555554444444431333334 PP

      DsbD_2 160 gLGTlpalllfglllgllskklr.....kkllr.lagvllillgll 199
                  L   +a++l++l+l  l ++ r       +l+  + +l+i+lg++
  EHT99568.1 115 LLQGSVAIVLVTLMLVVLHTSSRqlhlsSFWLEkGSYLLVIALGIW 160
                 4444444444444444444433322244555544777777778776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00061
      DsbD_2 109 kklakklkslasalllGllnGllpCglvysalllalasgsaleGalvmlaFgLGTlpalllfglllgllskklr 182
                 +++a    + ++ ll+ l +Gl pC    ++ll+a + g +l+G+l+ ++ ++GT +++ ++gll+++ ++ ++
  EHT99568.1 205 QQVAGA-VNVKTQLLVVLSMGLRPCSGAIMMLLFAKVIGVYLWGVLSAAVMAMGTALTISAIGLLVQRSRSLAQ 277
                 333332.67888888889************************************************99876555 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   2.3      0.15   6.7e+02      68      89 ..      19      40 ..      12     140 .. 0.64
   2 ?    0.4   0.4      0.11   4.9e+02      72     139 ..     152     222 ..     113     231 .. 0.63
   3 ?   13.0   7.4   1.4e-05     0.064      69     141 ..     248     316 ..     228     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.15
  Trp_oprn_chp 68 rvvgvllalagagaavaalsll 89
                   +vg+++a++++++ ++ + l 
    EHT99568.1 19 FMVGLVTAVSAIWLYWPQILLQ 40
                  5678888888888887776553 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
  Trp_oprn_chp  72 vllalagagaavaalslltdpadaaraaa.aaatgvasaaaave....ltawpvlalaggvllllagvllllr 139
                   +l++++g++++++a++ l+     + a + +a +  ++ +++ +    ++  p +  ++g++ + + +l++l+
    EHT99568.1 152 LLVIALGIWTGYRAVNSLWRLFRPKPAMNiRALH--PHHHHDDQcgcgHAHLPSAQQVAGAVNVKTQLLVVLS 222
                   6888889999999988877644444444423311..2222222234556667777777776666666666655 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.4e-05
  Trp_oprn_chp  69 vvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaaveltawpvlalaggvllllagvllllrar 141
                   v+++ ++++g +++++a+ ll++++ + +++ +a    +s  ++ + +  p+lal+g v+l++ag +l+ +a+
    EHT99568.1 248 VLSAAVMAMGTALTISAIGLLVQRSRSLAQRLSA----NSHISDRARSLLPLLALLGSVMLIVAGCALWQSAQ 316
                   4455556678888888888888887777777644....45556666888******************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2273.37
//
Query:       EHT99569.1  [L=208]
Description: hypothetical protein CKS_1513 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-60  203.3   0.0    4.7e-60  203.2   0.0    1.0  1  DUF1007   Protein of unknown function (DUF1007)


Domain annotation for each model (and alignments):
>> DUF1007  Protein of unknown function (DUF1007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.2   0.0   2.6e-64   4.7e-60       2     211 .]       5     207 ..       4     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.2 bits;  conditional E-value: 2.6e-64
     DUF1007   2 llllllllsgaalAHPHvfidartelvfdddgrltglrhtWtfDelySafllqgldknkdgvldeeelaelakenvenlkeyeYFtelkaggkklkfae 100
                 +++ll l+s++alAHPH+fid++telv d+d r+tgl++ Wt+De++Sa+ll+++ ++k+g   +  +++la+ +++n+ +++YF+e++++++++kf +
  EHT99569.1   5 FFALLTLISSSALAHPHSFIDMKTELVADGD-RFTGLKMIWTMDEITSADLLYDASDAKPG---TVVWKKLAAGVMANVLGQHYFSEIWHNKQRVKFLN 99 
                 678999***********************99.8****************************...89********************************* PP

     DUF1007 101 peeeysleyqdgrltlsFtlplkepvkakkkkltlevyDptyYvafeyaedeavtlaga.pagCsvevvePdpdaala.kaasLdeigadafeneeeds 197
                  ++ey+l++++++ +l+F+lpl+ep  ++++++++ ++Dpty+v++ y++ +a t+  a +++C++++++P+p+++l+ +a sLd+  a   ++++e++
  EHT99569.1 100 LPKEYNLSRSGNKAVLEFVLPLAEPPTLTGQRFEILTFDPTYFVDMFYDKPDALTVPPAlQSRCAFTLHTPKPNDSLKqYALSLDK--A---DAPPEEM 193
                 **************************************************99999999989*****************99999999..3...3479*** PP

     DUF1007 198 dlgaqfaervtvtC 211
                 dlg+qfa++v++tC
  EHT99569.1 194 DLGRQFAQTVILTC 207
                 ************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1537.64
//
Query:       EHT99570.1  [L=422]
Description: CsiE family stationary phase-inducible protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.8   0.1    3.6e-12   46.4   0.0    2.7  2  PRD       PRD domain


Domain annotation for each model (and alignments):
>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0     0.002        35      14      34 ..     122     142 ..     112     213 .. 0.87
   2 !   46.4   0.0     2e-16   3.6e-12       2      89 ..     237     325 ..     236     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.002
                 -BTTCHHHHHHHHHHHHHHHH CS
         PRD  14 kleddslyerLitHlkfaieR 34 
                  l d+ ++++Li H++++++R
  EHT99570.1 122 ALYDETNLQALIQHCSLCLDR 142
                 337999*************99 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 2e-16
                 HHHHHHHHHHTS-B.TTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD   2 eiiekiekklqikl.eddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89 
                 ++i+++e + + ++ e  +l ++L+tHl+ a++R    i i+++  ++i + yp++  +++++l   e+e+ i +  +E++ ++++f++
  EHT99570.1 237 QLIDDFEASSGAPFpERAELQQQLYTHLAQALDRTYFTIGIDDSVAQDITRLYPRLLRTTQQALVAFEQEYAICFKPEEVSLITIIFGA 325
                 799***********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3232.77
//
Query:       EHT99571.1  [L=382]
Description: putative 3-phenylpropionic transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-43  146.8  29.7    2.5e-42  145.1  29.7    1.7  1  MFS_1_like     MFS_1 like family
      2e-13   50.1  22.8    2.6e-13   49.7  22.8    1.0  1  Nuc_H_symport  Nucleoside H+ symporter
    9.2e-11   41.2  40.6    9.2e-11   41.2  40.6    2.0  2  MFS_1          Major Facilitator Superfamily
    1.5e-10   40.5  24.9    8.2e-10   38.0  25.2    2.1  1  LacY_symp      LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1  29.7   5.7e-46   2.5e-42       3     381 ..       8     360 ..       6     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 5.7e-46
  MFS_1_like   3 slkilyFfffaalgsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsv 101
                 +l + yF +f   g  lP+++++lk  gl++++ig+++   ++ ++++++++   a +++   +++ +  ll++++ l  +  +               
  EHT99571.1   8 WLGLSYFTYFFCYGIYLPFWGVWLKGVGLNPEQIGLLLGCGMVARFVGSLFI---ASQVKHPSQLITALRLLALLTCL--F-AV--------------- 85 
                 57788999999***************************************86...56677777766655555544444..3.33............... PP

  MFS_1_like 102 aqdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlil 200
                    +  +++  +l+l+++ +++f +++++l da++ +++++    yG +rl+Gs+ ++i++ +tG+l++ +s + +    l+++ a+++ +   ++l++
  EHT99571.1  86 --GYWTGQQWLWLLLVMTGFNLFFSPLVPLSDALAATWTQQIGLAYGPVRLWGSLAFVISSSLTGMLVTAFSSQAI----LMLLSAGVISMLAGMLLTP 178
                 ..2447999999*************************************************************863....5677777777777775665 PP

  MFS_1_like 201 netekesklkvtksl...qvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliia 296
                 +   ++s+ k   +    q+   ++++  v+ f++ +++l+ ++++++ F  ++ +e g+s + +G l+ lgvvaei++f ++++l+++  ++ ll+++
  EHT99571.1 179 QTHPQGSERKSN-VSggwQAWRDLIRENAVWRFMVCVTLLQGAHAAYYGFSAIWWQESGYSASRIGYLWSLGVVAEIVIFALSHRLFHRWQARDLLLLS 276
                 555554444433.3346599999**************************************************************************** PP

  MFS_1_like 297 llayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaif 381
                  +   +r++l+++ + + +++++++Lh  +f ++++aa+++++   + +++ ++q+l+s+l +g G a+ ++i+G+l+ +   + 
  EHT99571.1 277 GVCALIRWSLLGASTALPVLIVAQILHCGTFTVCHLAAMRFIASRQGAEVI-RLQSLYSALAMGGGIAVMTMICGVLFTHLHGQL 360
                 *******************************************88888876.89************************8765554 PP

>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7  22.8   5.8e-17   2.6e-13      11     363 ..      13     354 ..       5     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 5.8e-17
  Nuc_H_symport  11 sflqyfiWGaWlvklfsylsktlfaaaeiglvysslgiaailspilvgiiaD...kflsaervlavlhligavvlflaaqvtefe..alflvlLvy 101
                     f  +f +G +l+  + +l   + ++ +igl   +  +a  ++  ++ +      + + a r+la+l  + av        t  +   l lv+  +
     EHT99571.1  13 YFTYFFCYGIYLPFWGVWLKGVGLNPEQIGLLLGCGMVARFVGSLFIASQVKhpsQLITALRLLALLTCLFAV-----GYWTGQQwlWLLLVMTGF 103
                    5677899*********************************999887655432011455555555555444444.....333333300344555568 PP

  Nuc_H_symport 102 slaymPtlaltnsiafanlrDvvtdfprirvlGtvGfilaslaflllvvsladlelsrlqlliaagvslllavyaltLPkiP..akkkakqslkkl 195
                     l + P + l++++a +  + +  +++++r++G + f+++s    +lv +   ++   + +l++agv  +la+  lt    P  +++k++ s    
     EHT99571.1 104 NLFFSPLVPLSDALAATWTQQIGLAYGPVRLWGSLAFVISSSLTGMLVTA---FSSQAILMLLSAGVISMLAGMLLTPQTHPqgSERKSNVSGGWQ 196
                    9***************************************7666666655...5567788888999989999988875555644455555555555 PP

  Nuc_H_symport 196 lgldafvLlknkrllvfflvslllavvlqiyyvfanafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfalfa 291
                    +++d   L++++ +  f+++  ll   ++ yy f+  + +e + +       l sl+ vaei+++ +  ++ +r+  +  llls v a +r++l  
     EHT99571.1 197 AWRD---LIRENAVWRFMVCVTLLQGAHAAYYGFSAIWWQESG-YSASRIGYLWSLGVVAEIVIFALSHRLFHRWQARDLLLLSGVCALIRWSLLG 288
                    5555...99************99999**************999.6666667788********9999999************************985 PP

  Nuc_H_symport 292 ygaddepvgvvlllLslivyGvaydffyitayvfvdkevpkdirasaqGlflllvnGvGallgsilsgalve 363
                           +++ +l+++ i++  ++   +++a  f+  +   ++    q l+  l  G G  + +++ g l  
     EHT99571.1 289 AS-----TALPVLIVAQILHCGTFTVCHLAAMRFIASRQGAEVI-RLQSLYSALAMGGGIAVMTMICGVLFT 354
                    54.....3444555556779999999999999999887776653.369999999999999999999987765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  40.6   2.1e-14   9.2e-11       2     305 ..      10     298 ..       9     322 .. 0.72
   2 !    8.5  15.6   0.00019      0.84      26     173 ..     234     376 ..     232     382 .] 0.72

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.1e-14
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                  l++f +++ ++i++p+      +  g++p +iglll++ +++ +v+sl++++ +   +     l l +ll++l+ +++ ++ +++ +ll++     l+
  EHT99571.1  10 GLSYFTYFFCYGIYLPFWG-VWLKGVGLNPEQIGLLLGCGMVARFVGSLFIASQVKHPSQLItALRLLALLTCLF-AVGYWTgQQWLWLLLVMTGFNLF 106
                 6899***************.666889*************************999776555555666666666666.44445535555555555555555 PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav..fyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                  + l+p++ al+a w+ +   g+a+g + +  sl++++   l g+l+++++ +a+   + ++++s+la++   ll p+++p+ +  ++       +  +
  EHT99571.1 107 FSPLVPLSDALAATWTQQ--IGLAYGPVRLWGSLAFVISSSLTGMLVTAFSSQAIlmLLSAGVISMLAGM---LLTPQTHPQGSERKSN------VSGG 194
                 59**************95..*******************************9999333444555555544...5555555555544443......4579 PP

       MFS_1 196 lvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                 +   w+ l + + +w +++++ ll + ++++++ ++ ++  +  g+s +  +g+l +l+ ++ ++++ l+ rl +r+++r  lll+++++l   + + l
  EHT99571.1 195 WQA-WRDLIRENAVWrFMVCVTLLQG-AHAAYYGFSAIW-WQESGYS-ASRIGYLWSLGVVAEIVIFALSHRLFHRWQARDLLLLSGVCAL---IRWSL 286
                 999.***********76666666665.888888888887.899****.78888888888888888899********888666665555444...33333 PP

       MFS_1 294 lavtssavllll 305
                 l++++  ++l++
  EHT99571.1 287 LGASTALPVLIV 298
                 333322333333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00019
       MFS_1  26 dlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvl.qGlgagalfpagaaliadwfpkeergra 122
                 + g+s+s ig l +l  ++ +v   +  rl  r+ +r +lll+ ++ ++  +ll++ ++ l++l+v+ +l +G ++ +   a++ +ia      e  r 
  EHT99571.1 234 ESGYSASRIGYLWSLGVVAEIVIFALSHRLFHRWQARDLLLLSGVCALIRwSLLGA-STALPVLIVAQILhCGTFT-VCHLAAMRFIASRQGA-EVIRL 329
                 66999*****************************9999888888888888344444.3555577777776244444.4444444444444444.99999 PP

       MFS_1 123 igllsa.gfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                  +l+sa +++ G+++  ++ g+l ++l    +f+++a+v+l a  l  +l p
  EHT99571.1 330 QSLYSAlAMGGGIAVMTMICGVLFTHLHG-QLFWVMALVALPA--L--FLRP 376
                 9***9956666667777777777767765.59*********99..5..4444 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0  25.2   1.8e-13   8.2e-10      12     388 ..       9     367 ..       5     375 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.8e-13
   LacY_symp  12 falffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvG 110
                 ++l++f yff +++y p++ vwlk+v gl   ++G++  +  +   +   lf  i  ++    +l+ ++ ll +l++ f +  ++   q  +++ +++ 
  EHT99571.1   9 LGLSYFTYFFCYGIYLPFWGVWLKGV-GLNPEQIGLLLGCGMVARFV-GSLF--IASQVKHPSQLITALRLLALLTCLFAVGYWTG--QQWLWLLLVMT 101
                 5799*******************996.9************8665544.4444..6778888999*****99999999888766654..55566656655 PP

   LacY_symp 111 gvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssa..kvadalGankea 207
                 g  + l +s   ++ +a     +++  + yG +r++G+l + +++sl+G+l +  +s +  +   +++i +l  +l  p+++ +      +  G   +a
  EHT99571.1 102 G--FNLFFSPLVPLSDALAATWTQQIGLAYGPVRLWGSLAFVISSSLTGMLVTAFSSQAILMLLSAGVISMLAGMLLTPQTHPQGseRKSNVSG-GWQA 197
                 5..67899*******************************************9876655555555556666666666665554443003333333.3344 PP

   LacY_symp 208 fslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvimsvrilgs 306
                        +l +++ +w f++ v   +  +  +    a++++     +       Gy+ + g++ + +i ++   +  r  a++ ll++gv   +r    
  EHT99571.1 198 W-----RDLIRENAVWRFMVCVTLLQGAHAAYYGFSAIWWQ----ESGYSASRIGYLWSLGVVAEIVIFALSHRLFHRWQARDLLLLSGVCALIRWSLL 287
                 4.....6999********99887777766665544455544....444445567*************************************99997655 PP

   LacY_symp 307 afattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgii 388
                   +t+   +++ ++lh     ++ ++++++i+s+  + +      +   l+   +i ++++++G l+ ++   + + v++++
  EHT99571.1 288 GASTALPVLIVAQILHCGTFTVCHLAAMRFIASRQGAEVIRLQ-SLYSALAMGGGIAVMTMICGVLFTHLH-GQLFWVMALV 367
                 55566666677799*****************998766554322.233456666677778888888887764.4455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2661.70
//
Query:       EHT99572.1  [L=417]
Description: serine hydroxymethyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-186  618.2   0.1   5.3e-186  618.0   0.1    1.0  1  SHMT             Serine hydroxymethyltransferase
    9.1e-11   41.5   0.0    1.3e-10   41.0   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    5.8e-06   25.8   0.0    1.2e-05   24.7   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
    6.3e-06   25.4   0.0    9.5e-06   24.8   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
     0.0052   15.6   0.0     0.0084   14.9   0.0    1.3  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
  ------ inclusion threshold ------
      0.024   14.0   0.1      0.034   13.5   0.1    1.3  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.13   10.7   0.0        0.3    9.6   0.0    1.6  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  618.0   0.1  2.1e-189  5.3e-186       1     399 []       8     386 ..       8     386 .. 0.99

  Alignments for each domain:
  == domain 1  score: 618.0 bits;  conditional E-value: 2.1e-189
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 ++++d+e+++++++ek rq+e+ieliasen+ts++v++a+Gs+ltnkyaeGyPGkryyGGce+vd+ve+la+drak lf++d    ++nvqp+sGsqan
  EHT99572.1   8 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGAD----YANVQPHSGSQAN 102
                 5789******************************************************************************....************* PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 +av+tall+pgd+i+g++la+GGhlthG++v+      s+kl+++v+y++d etg idy+el + ak+++Pk+i++G+says ++d+a++reiad+vga
  EHT99572.1 103 FAVFTALLQPGDTIVGMNLAHGGHLTHGSPVNL-----SGKLYNVVPYGID-ETGKIDYNELAELAKTHQPKMIIGGFSAYSGICDWAKMREIADSVGA 195
                 ********************************9.....*************.9********************************************** PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 +l+vdmah+aGl+aa+v+p+P+++a+vvt+tthktl+Gprgg+il++             +eel+kk+nsavfPg qGGPl+hvia+kava+kea+epe
  EHT99572.1 196 WLFVDMAHVAGLIAAEVYPNPLPHAHVVTSTTHKTLAGPRGGIILAK-----------GGDEELYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEAMEPE 283
                 **********************************************9...........4569************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekv 395
                 fk+yq+qv knaka++e+l e+gy++vsgGt nhl+l+dl++k+l+Gk+a+++l+++nit+nkn+vP+d ks++vtsG+r+Gtpa+t+rgfke+d++++
  EHT99572.1 284 FKTYQQQVAKNAKAMVEVLLERGYNIVSGGTYNHLFLIDLVSKNLTGKEADAALGRANITVNKNSVPNDpKSPFVTSGVRIGTPAVTRRGFKEADVREL 382
                 *************************************************************************************************** PP

                 HHHH CS
        SHMT 396 akfi 399
                 a +i
  EHT99572.1 383 AGWI 386
                 *997 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   5.2e-14   1.3e-10      58     354 ..      87     372 ..      34     378 .. 0.72

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 5.2e-14
                    CTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHH...HHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEE CS
  Aminotran_1_2  58 grseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasykni...lrlsggevvryplyseedfhldlealeealkeapegnkktk 150
                    g       +   +v+  sG++a+ +++++ll+  pgd i+  ++ ++ + +    ++lsg     +p+   e+ ++d ++l e+ k++   ++   
     EHT99572.1  87 G------ADYA-NVQPHSGSQANFAVFTALLQ--PGDTIVGMNLAHGGHLTHgspVNLSGKLYNVVPYGIDETGKIDYNELAELAKTH---QP--- 167
                    4......3444.9*********9999999998..**********998876543338888877666676677************88883...34... PP

                    EEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH...HHHHHH CS
  Aminotran_1_2 151 vilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna...avvsql 243
                     +++ + +  +G +++ ++ +++   a++ +++lfvD+a+ ++   +    ++++n  ++ + +++++  K   laG R G+il++    ++ + l
     EHT99572.1 168 KMIIGGFSAYSG-ICDWAKMREI---ADSVGAWLFVDMAHVAGLIAA----EVYPNPLPHAH-VVTSTTHK--TLAGPRGGIILAKGgdeELYKKL 252
                    456777777777.5666666666...9999***************93....33555555555.44444445..5678889***9866444777777 PP

                    HHHHHHHTSSHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCS..CSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEG CS
  Aminotran_1_2 244 rklsrpflsssllqaa.vaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasq..sgmflltdlsae.takelskkLleevgvyvtpg 335
                    ++++ p+    +l ++ + +a+  ++ ++ e+++ +q+++k++k +++ L e g ++++    +++fl+ ++s+  t ke+  +L    ++ v ++
     EHT99572.1 253 NSAVFPGGQGGPLMHViAGKAVAFKEAMEPEFKTYQQQVAKNAKAMVEVLLERGYNIVSGGtyNHLFLIDLVSKNlTGKEADAALGRA-NITVNKN 347
                    777777666555544404455555555555********************99966666554458999999999987555555555555.7777777 PP

                    GGGTS......TTEEEEECTTS-HH CS
  Aminotran_1_2 336 tsftv......pgrlRitvAgltee 354
                    + +        ++ +Ri  +++t+ 
     EHT99572.1 348 SVPNDpkspfvTSGVRIGTPAVTRR 372
                    7766666666666688888777765 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.8e-09   1.2e-05      39     127 ..      80     168 ..      50     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.8e-09
                      HHHHHHTT-SEE.EEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--..EEEEE-EBTTTBE-HHHHHHHS--S-TTS-E CS
  Beta_elim_lyase  39 davaelfgkeaa.lfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagv..klrdlknkeaGkmdlekleaaikevgaheek 127
                      d++++lfg+++a +  ++G +An   +++llq+g+ ++  + ah+   + g ++ l+g   ++++  ++e+Gk+d ++l+++ k    h++k
       EHT99572.1  80 DRAKALFGADYAnVQPHSGSQANFAVFTALLQPGDTIVGMNLAHGGHLTHGSPVNLSGKlyNVVPYGIDETGKIDYNELAELAKT---HQPK 168
                      78899****96526789***************************************887114455558999**********9998...4444 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.7e-09   9.5e-06      14     211 ..      42     239 ..      36     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.7e-09
                  HHHHHHHHHHHCTCCSSSS.SSSHHHHHHHHHHHHHH.HHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHH CS
  Aminotran_5  14 eVldalqeyytdynanvhr.svhhlgkeatkaveear.ekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqela 109
                  +V++a   ++t+ +a +   + +  g e  ++ve+   ++ ++l++a+  +  +  +++++a+ +v  +l   l+pgd+iv  ++ h + l     ++
   EHT99572.1  42 RVMQAQGSQLTNKYAEGYPgKRYYGGCEYVDIVEQLAiDRAKALFGAD--YANVQPHSGSQANFAVFTAL---LQPGDTIVGMNLAHGGHLTHGSPVN 134
                  666666666666666666534444455666777764414556666666..46667788889*********...************9999997666665 PP

                  HHHT.EEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---H..HHH.TESEEEEETTT.T CS
  Aminotran_5 110 krtg.akvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidv..kkl.gvDflafsghK.l 202
                     + ++v+ + +de+g++d +el++l +     ++i   s  +G++ + +++ ++a  +ga+++vD+a  +g i  +v  + l  + ++++++hK l
   EHT99572.1 135 LSGKlYNVVPYGIDETGKIDYNELAELAKTHQPKMIIGGFSAYSGIC-DWAKMREIADSVGAWLFVDMAHVAGLIAAEVypNPLpHAHVVTSTTHKtL 231
                  443338**********************98888899*********87.678899999***********98777655544114332455699999**99 PP

                  TSSTT-EEE CS
  Aminotran_5 203 lgPtGiGvl 211
                   gP G G++
   EHT99572.1 232 AGPRG-GII 239
                  99999.444 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-06    0.0084      75     292 ..      82     280 ..      74     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-06
                 HHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--E.B-TTS-BE---GGGGSHHHHHHHHHHSTTTGSESEE CS
    OKR_DC_1  75 aarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepe.rnalgiiggidlkefeeetlkekikevpdakaprla 172
                 a  +fgad + +  +  s +n +v +a+l+pgd+++        ++h+  l+   Pv l+ +  n   ++ gid+   + +   ++++e +++++p+++
  EHT99572.1  82 AKALFGADYANVQPHSGSQANFAVFTALLQPGDTIVGM-----NLAHGGHLTHGSPVNLSGKlYN--VVPYGIDE---TGKIDYNELAELAKTHQPKMI 170
                 66789***9999999999****************9754.....46777789999*****998444..36788988...444445889**********9* PP

                 EEESS-TTSEEE-HHHHHHHHTTSESEEEEE-TT-TTGGGSGGGTTSSSSSSS-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT--HHHHHHHHHHT CS
    OKR_DC_1 173 vitnsTYdGvlynakeivdkleklsdrilfDeAwvgyeqfiplyadaskllaenendpgilvtqSvHKllaalsqaSlihvkeelivneerlneafmmh 271
                 +   s Y G++ +  ++ + +++++  +++D A+v+     ++y + ++           +vt  +HK+la+   + +i  k++     ++ln+a    
  EHT99572.1 171 IGGFSAYSGIC-DWAKMREIADSVGAWLFVDMAHVAGLIAAEVYPNPLPHAH--------VVTSTTHKTLAGPR-GGIILAKGGDEELYKKLNSAVFPG 259
                 *********87.6667889999999999********9998898888777543........58999999999854.445555555455567777777777 PP

                 S-SS--HHHHHHHHHHHHHHS CS
    OKR_DC_1 272 attSpsYpllAsldvaakmle 292
                     p+  ++A   va k   
  EHT99572.1 260 GQGGPLMHVIAGKAVAFKEAM 280
                 777777777777777776654 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.3e-05     0.034      86     195 ..     141     253 ..      83     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
                      EEEEE-B-TTTSSB-GGGCGGG-.-TTEEEEEE.B-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-S CS
  DegT_DnrJ_EryC1  86 kpvfvDvdpdtynidpaaieaai.tertkaIlp.VhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnltt 177
                      ++v+  +d +t  id ++++++  t + k I+    +y+ ++d +++++ia++ g +++ D Ah  G   ++ +   l  a v+     K+l+ 
       EHT99572.1 141 NVVPYGID-ETGKIDYNELAELAkTHQPKMIIGgFSAYSGICDWAKMREIADSVGAWLFVDMAHVAGLIAAEVYPNPLPHAHVVTSTTHKTLAG 233
                      56666777.7889998877665515555888753799******************************999998888888999999999999999 PP

                      SS-EEEEES..THHHHHHHH CS
  DegT_DnrJ_EryC1 178 GeGGavvtn..deelaekar 195
                        GG+++ +  deel +k++
       EHT99572.1 234 PRGGIILAKggDEELYKKLN 253
                      99999998655777777765 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00012       0.3      64     213 ..      85     241 ..      76     306 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00012
                      HHT-SEEEE.ESSHHHHHHHHHHTTS-TTEEEEEESTSSHH..HH....HHHHHTHHHTTC...EEEEESTTSHHHHHHHCCTTEEEEEEESS- CS
  Cys_Met_Meta_PP  64 Leggeaala.vssGmaAiaaailallkaGdeivvsddlYgg..tq....rllkkvlkklgi...evkfvdtsdleelekaikentklvylEtpt 147
                      L g++ a +   sG  A +a+++all+ Gd iv ++ ++gg  t+    +l  k+++ +     e+  +d ++l+el+k  +++  ++ +    
       EHT99572.1  85 LFGADYANVqPHSGSQANFAVFTALLQPGDTIVGMNLAHGGhlTHgspvNLSGKLYNVVPYgidETGKIDYNELAELAKTHQPK--MI-IGGF- 174
                      555555544146**********************99999883322111134344444333300123334444444444444444..33.3333. PP

                      TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS.....-GGGGT-SEEEEETTTTTTCSSS--EEEEEE CS
  Cys_Met_Meta_PP 148 npllkvvDiekiaklakkagvlvvvDntfaspllq.....rplklgaDivvhSaTKylgGhsdvvaGvivv 213
                      +    ++D +k+ ++a ++g+ ++vD + +++l+      +pl + a +v+  + K l+G     +G+i++
       EHT99572.1 175 SAYSGICDWAKMREIADSVGAWLFVDMAHVAGLIAaevypNPLPH-AHVVTSTTHKTLAGPR---GGIILA 241
                      346679999999999999999999999888886542222256665.6777777778887765...455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3027.70
//
Query:       EHT99573.1  [L=394]
Description: nitric oxide dioxygenase/dihydropteridine reductase 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-15   56.4   0.0    1.9e-14   54.2   0.0    2.1  3  NAD_binding_1  Oxidoreductase NAD-binding domain
    8.1e-13   48.9   0.0    1.4e-12   48.1   0.0    1.4  1  Globin         Globin
    1.8e-08   34.6   0.0    4.8e-08   33.3   0.0    1.6  1  FAD_binding_6  Oxidoreductase FAD-binding domain
     0.0012   18.7   0.1     0.0023   17.9   0.1    1.5  1  Protoglobin    Protoglobin


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.6   1.6e+04      32      55 ..      64      87 ..      57      92 .. 0.74
   2 ?   -1.9   0.0       1.1     5e+03      59      85 ..     138     164 ..     132     173 .. 0.74
   3 !   54.2   0.0   4.3e-18   1.9e-14       1     108 [.     264     370 ..     264     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.6
                   EEESSGCGSTTHHHHHHHHHHCTT CS
  NAD_binding_1 32 yGnrteedllyreeleelakklpg 55
                   yG++ ++  ++r  +e++a+k+ +
     EHT99573.1 64 YGANLDNLTALRPAVEKIAQKHAS 87
                   777777777888888888888866 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                    EEEEESSCTTTSSSEESSHHHHHHHHH CS
  NAD_binding_1  59 vvavvsreeagweggkgrvqdalleel 85 
                    +++++ +++ gw+g + +   a+ +++
     EHT99573.1 138 LYQASAHQQGGWRGTRAFFISAIEQQS 164
                    455578899999999998888887765 PP

  == domain 3  score: 54.2 bits;  conditional E-value: 4.3e-18
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEE.ESSCTTTSSSEESSHHHHHHHHHHHHSSTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.rlkvvav.vsreeagweggkgrvqdalleellslkkeeth 94 
                    +i++G+G +P++++l+a++++ +++  v++++++++ +++++ +e++++ + lp+ + ++++   ++ +ag  + +g ++ a +   l+  + +th
     EHT99573.1 264 LISAGVGQTPMLAMLHALAAR-QHPAAVNWLHAAENGQQHAFADEVRAAGALLPDfAQHIWYRePNQGDAGRYDAQGLMDLASVSPRLQ--EVNTH 356
                    79******************8.999******************************9556777646666677777777777777666666..9**** PP

                    EEEECSHHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikavr 108
                    +y+CGp g++++v 
     EHT99573.1 357 FYLCGPLGFMQFVV 370
                    ***********986 PP

>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   3.2e-16   1.4e-12       2     109 ..       7     102 ..       6     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 3.2e-16
                 HHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HH CS
      Globin   2 kalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpa 100
                 ++ vk++ + ++a+ ++l+a+++  +++++p++k++F+++           +++  a+ +++++a++ + +nldn +al++a++k+a++Ha+   ++p+
  EHT99573.1   7 IHIVKSTLPAIAACGPDLTAHFYSQMLSHHPELKHVFNRA-----------NQRNGAQREALFNAICAYGANLDNLTALRPAVEKIAQKHASLT-IQPE 93 
                 678***********************************77...........68999**************************************.**** PP

                 HHHHHHHHH CS
      Globin 101 nFklfgeal 109
                 ++k++ge l
  EHT99573.1  94 QYKIVGEYL 102
                 ****99876 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.1e-11   4.8e-08      10      97 ..     163     252 ..     155     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.1e-11
                    CCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6  10 vsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlGkf 97 
                     s+ ++ ++++  + k    +++Gq+v l+l+    + + iR+Y++++ +n++ +  + vk  +gG++s  L +++k gd ++++ P+G f
     EHT99573.1 163 QSDVIKSVTLAPVDGKPIASFRPGQYVSLHLQpaGFRYQQIRQYSLTTVSNAQ-TYRIAVKQEAGGRVSGWLhQQAKAGDEIQLTPPHGDF 252
                    555566666666667778899***********65457899*****77666665.667***************777**************98 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   5.1e-07    0.0023      14     114 ..       2     105 ..       1     134 [. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.1e-07
                  -SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTS.HHHHHHHCH.....HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHH CS
  Protoglobin  14 lteedlaaLralapliealipavvdafYekllsf.petarifet.....ssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyi 105
                  l++++++++++  p i+a  p+++  fY+++ls+ pe++++f++      +q+e l +   +y  +l   +   a   +++k+++ h+ l ++p +y 
   EHT99573.1   2 LDAKTIHIVKSTLPAIAACGPDLTAHFYSQMLSHhPELKHVFNRanqrnGAQREALFNAICAYGANL---DNLTALRPAVEKIAQKHASLTIQPEQYK 96 
                  789999************************99988*********99888888888889999999999...66677888999*************9997 PP

                  HCHHHHHHH CS
  Protoglobin 106 aalglvqev 114
                     ++++++
   EHT99573.1  97 IVGEYLLSS 105
                  766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2911.80
//
Query:       EHT99574.1  [L=90]
Description: hypothetical protein CKS_1508 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 678.90
//
Query:       EHT99575.1  [L=112]
Description: regulatory protein P-II for glutamine synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-43  147.4   2.8    1.9e-43  147.2   2.8    1.0  1  P-II      Nitrogen regulatory protein P-II


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   2.8     1e-47   1.9e-43       1     102 []       4     105 ..       4     105 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 1e-47
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 i aii+p+kl++v+eaL+++g++g+tv+evkG+G+qkghtelyrgaey+v++lpkvk+e+vv d+ v+++ve+i+++a+tg+iGDGkiFv++v +v+ri
  EHT99575.1   4 IDAIIKPFKLDDVREALAEVGITGMTVSEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEMVVGDDIVDTCVETIMRTAQTGKIGDGKIFVFDVARVVRI 102
                 89************************************************************************************************* PP

                 TTT CS
        P-II 100 rtg 102
                 rtg
  EHT99575.1 103 RTG 105
                 **8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 907.21
//
Query:       EHT99576.1  [L=444]
Description: putative sensor histidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-72  241.4   0.0    6.3e-72  240.7   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    3.5e-30  104.4   0.0    7.7e-30  103.4   0.0    1.6  1  Response_reg     Response regulator receiver domain
    1.7e-22   80.0   0.0    1.7e-21   76.8   0.0    2.5  2  Sigma54_activ_2  Sigma-54 interaction domain
    2.5e-08   34.0   0.0    5.3e-08   33.0   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00016   22.1   0.0     0.0004   20.8   0.0    1.7  1  AAA              ATPase family associated with various cellul
    0.00096   19.3   0.0     0.0019   18.3   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.002   18.0   0.0      0.024   14.5   0.0    2.3  2  AAA_3            ATPase family associated with various cellul
     0.0061   16.0   0.1        2.4    7.5   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0067   16.8   0.1      0.019   15.4   0.1    2.0  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.015   14.4   0.0      0.036   13.2   0.0    1.6  1  MCM              MCM P-loop domain
      0.016   15.0   0.2      0.057   13.2   0.2    2.1  1  HTH_8            Bacterial regulatory protein, Fis family
      0.017   15.4   0.0      0.099   12.9   0.0    2.2  3  OKR_DC_1_N       Orn/Lys/Arg decarboxylase, N-terminal domain
      0.028   14.1   0.0      0.089   12.5   0.0    1.9  1  UPF0175          Uncharacterised protein family (UPF0175)
      0.058   13.1   0.0       0.12   12.1   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
      0.081   12.1   0.0       0.15   11.3   0.0    1.3  1  TIP49            TIP49 P-loop domain
      0.086   13.1   0.0         17    5.7   0.0    2.6  2  AAA_22           AAA domain
      0.097   13.1   0.1       0.79   10.1   0.0    2.4  2  Glyco_trans_1_4  Glycosyl transferases group 1
        0.1   12.1   0.0       0.19   11.2   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
       0.21   11.4   2.5       0.57   10.0   0.8    2.6  2  IDEAL            IDEAL domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.7   0.0   6.7e-75   6.3e-72       1     167 [.     136     302 ..     136     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: 240.7 bits;  conditional E-value: 6.7e-75
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      ++++++++ +lleq+++va++d+svli+G+sGtGKe+la+aih+as+r++kpf+a+nc+a+pe+lleseLFGh+kGaFtGA +++ Glf++a+g
       EHT99576.1 136 IVTRNPQMLRLLEQAHMVAQSDVSVLINGQSGTGKEVLAQAIHAASPRADKPFIAINCGALPEQLLESELFGHAKGAFTGAVSARDGLFKAAEG 229
                      578999**************************************************************************************** PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      GtlfLDeig++p++lQ+kLlrv+qe++v+++Gs++ i+++vrii+at++dl +a+e+++fredL+yrlnv+++
       EHT99576.1 230 GTLFLDEIGDMPPALQVKLLRVIQERKVRPLGSNNDIDINVRIISATHRDLPKAMEKNEFREDLFYRLNVVNL 302
                      **********************************************************************987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   8.1e-33   7.7e-30       2     111 ..       9     117 ..       8     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 8.1e-33
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   l+vdDdp +++ll   l +egy +v++a++g +al+ll++ek+dl++ D++m++mdGl l+ ei++++  lpviiltah++ ++av+a + g++ fl
    EHT99576.1   9 LLVDDDPSLLKLLGMRLSSEGY-QVTTAASGPDALRLLQKEKIDLVISDLRMDEMDGLALFGEIQKRHMGLPVIILTAHGSIPEAVAATQQGVFSFL 104
                   89********************.************************************************************************** PP

                   ESSG-HHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkal 111
                   +Kp+d+++L ka+
    EHT99576.1 105 TKPVDRDALYKAI 117
                   **********998 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   1.3e+03      21      43 ..      77      99 ..      71     126 .. 0.72
   2 !   76.8   0.0   1.8e-24   1.7e-21       5     138 .]     141     307 ..     137     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
                     SS-EEEEEETT--HHHHHHCC-- CS
  Sigma54_activ_2 21 klpvfltGekGsgkelvArlLhk 43
                      lpv ++ + Gs +e vA + + 
       EHT99576.1 77 GLPVIILTAHGSIPEAVAATQQG 99
                     589************99987555 PP

  == domain 2  score: 76.8 bits;  conditional E-value: 1.8e-24
                      HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH.......................TTTSEEEE CS
  Sigma54_activ_2   5 aaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq.......................akggtLyl 75 
                      + + +l e+   +aqs + v++ G+ G+gke+ A+++h  s + +++f+ +++++lp +lle+                       a+ggtL+l
       EHT99576.1 141 PQMLRLLEQAHMVAQSDVSVLINGQSGTGKEVLAQAIHAASPRADKPFIAINCGALPEQLLESelfghakgaftgavsardglfkaAEGGTLFL 234
                      5677888899999********************************************777777666666666666665555555558******* PP

                      EE-TT--HHHHHHHHHHHHH.........HT.TTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  76 kdiadlskaeqkeLlellak.........ae.ksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                       +i d+++a+q +Ll ++++         ++   ++r++s++ +dl++ +e+++f e L+++L  + l++P+L
       EHT99576.1 235 DEIGDMPPALQVKLLRVIQErkvrplgsnNDiDINVRIISATHRDLPKAMEKNEFREDLFYRLNVVNLKIPAL 307
                      ****************************855689*************************************98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   5.6e-11   5.3e-08       2     121 ..     160     277 ..     159     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 5.6e-11
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE-...-TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvql...trdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerr 93 
                 vl+ G++GtgK  la+ + aa     +++  +++   ++++ e++l+g+ + +  g  s +d+ ++  a eg +l+lDE+  ++++ + +Ll+++ er+
  EHT99576.1 160 VLINGQSGTGKEVLAQAIHAASpraDKPFIAINCgalPEQLLESELFGHAKGAfTGAVSARDGLFK--AAEGGTLFLDEIGDMPPALQVKLLRVIQERK 256
                 899*******************98777777775422278999999999999888888888998888..789**************************** PP

                 EE..-SSSEEE---......-EEEEEES CS
       AAA_5  94 llleeggelvkaknddllerfrviatan 121
                 +++  +++ ++ +       +r+i +++
  EHT99576.1 257 VRPLGSNNDIDIN-------VRIISATH 277
                 *988777777664.......56665555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.3e-07    0.0004       1     113 [.     160     282 ..     160     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.3e-07
                 EEEESSTTSSHHHHHHHHHHH...HTHEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavake...lgvefleisgsellsk.....yvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvn 87 
                 vl+ G  GtGK  la+a+      ++ +f+ i++  l ++     ++g+++  + + +++ +       +   lf+DEi  + ++            + 
  EHT99576.1 160 VLINGQSGTGKEVLAQAIHAAsprADKPFIAINCGALPEQlleseLFGHAKGAFTGAVSA-RDGLfkaaEGGTLFLDEIGDMPPAL-----------QV 246
                 6899**************9994444799*******9997676666555555555555533.222255534589*********9998...........99 PP

                 HHHHHHHHTTTS........SSTEEEEEEESS..GG CS
         AAA  88 qLlteldgvkkk........eskvivigatnr..pd 113
                 +Ll+++++ k +        + +v +i at+r  p+
  EHT99576.1 247 KLLRVIQERKVRplgsnndiDINVRIISATHRdlPK 282
                 9******99999999999997779999999985433 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     2e-06    0.0019       4     109 ..     158     258 ..     155     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2e-06
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregV 95 
                 +s+l+ g++g+Gk+ la+a+      + +k++i +++ +l e          ++   +  + a++g  +a+egG ++lDEi    p             
  EHT99576.1 158 VSVLINGQSGTGKEVLAQAIHAASP-RADKPFIAINCGALPEqlleselFGHAKGAFTGAVSARDGLFKAAEGGTLFLDEIGDMPP-----------AL 244
                 799*********************9.9**********99988777644444667778888889999999************99888...........88 PP

                 HHHHHHHHH--EE- CS
       AAA_2  96 qrdLLqileggtlt 109
                 q  LL+++ + +++
  EHT99576.1 245 QVKLLRVIQERKVR 258
                 88888888777777 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.6e-05     0.024       2     107 ..     160     273 ..     159     285 .. 0.79
   2 ?    0.8   0.0      0.45   4.2e+02      56      87 ..     311     342 ..     296     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
       AAA_3   2 vllegvPGlaktllvkal.akaldlefkriqftpdllPsdilGtevfeekekefe....fkkGpvfan....llladeinrappktqsalleameerqv 91 
                 vl++g  G++k +l++a+ a +  ++   i +    lP  +l +e+f +++  f+     + G +f+      l+ dei   pp  q  ll +++er+v
  EHT99576.1 160 VLINGQSGTGKEVLAQAIhAASPRADKPFIAINCGALPEQLLESELFGHAKGAFTgavsARDG-LFKAaeggTLFLDEIGDMPPALQVKLLRVIQERKV 257
                 89************9998355667888889999999************999776522214444.554323337999*********************** PP

       AAA_3  92 tvegethklpepflvl 107
                    g++ +++ +  ++
  EHT99576.1 258 RPLGSNNDIDINVRII 273
                 9988888887666555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.45
       AAA_3  56 fkkGpvfanllladeinrappktqsalleame 87 
                 ++  p++an ll    +r +p+++s  ++am+
  EHT99576.1 311 TEDIPLLANHLLRQAADRHKPQVRSFSVDAMK 342
                 566799********************999997 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0025       2.4      20      48 ..     155     183 ..     143     190 .. 0.82
   2 !    6.1   0.0    0.0067       6.3      93     128 ..     215     250 ..     207     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0025
  Mg_chelatase  20 aGgHnlllvGppGsGKtmlakrlpsllpp 48 
                       ++l+ G +G+GK +la+++++  p+
    EHT99576.1 155 QSDVSVLINGQSGTGKEVLAQAIHAASPR 183
                   455689****************9987776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0067
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRe 128
                   g  +++ G    a+ G LfLDE+ ++       L +
    EHT99576.1 215 GAVSARDGLFKAAEGGTLFLDEIGDMPPALQVKLLR 250
                   566889999999***********9998776555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     2e-05     0.019       5      63 ..     139     196 ..     135     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-05
      AAA_16   5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 R  ++ +Ll+  ++v++++  +vl+ G+sG+GK  l+++++ a  +++  f++ +c  l
  EHT99576.1 139 RNPQMLRLLEQAHMVAQSD-VSVLINGQSGTGKEVLAQAIHAASPRADKPFIAINCGAL 196
                 6667767777778888888.8********************877666555666555555 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.036      11     149 ..     110     256 ..     103     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
                 SSTHHHHHHHHSSTTSSS-HH.HHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE..EEESS.SSSSSHS.SSEE... CS
         MCM  11 ekdiieklvksiapsiyghed.vkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklaprav..ytsgk.gssaagL.taav... 101
                 ++++++ + +++a+++  ++d  ++ai+       +  ++ ++  ++d+ vl+ g +gt+K  l +++++ +pra   ++ ++ g+  + L        
  EHT99576.1 110 RDALYKAIDEALAQRVPVSDDrWREAIVTRNPQMLRLLEQAHMVAQSDVSVLINGQSGTGKEVLAQAIHAASPRADkpFIAINcGALPEQLlESELfgh 208
                 567788888888888876555489999988888888777788889****************************98522333321222333313322111 PP

                 EEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSE CS
         MCM 102 vrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqt 149
                  +   tg +    G    a++G + +De+  m  + +++l+ ++ + +
  EHT99576.1 209 AKGAFTGAVSARDGLFKAAEGGTLFLDEIGDMPPALQVKLLRVIQERK 256
                 456667778888899999999999999999999988888888876655 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2     6e-05     0.057       4      37 ..     397     430 ..     394     435 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-05
                 HHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHH CS
       HTH_8   4 evEkelIeaALertgGnkskAArlLGisRrtLyr 37 
                 ++E +++ + L+ t+Gn++ AArl G +R+ +y+
  EHT99576.1 397 QFELNYLRKLLQMTKGNVTNAARLAGRNRTEFYK 430
                 8999********************9999888775 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001     0.099      12      91 ..      24     102 ..      17     120 .. 0.86
   2 ?   -2.4   0.0         6   5.6e+03      53      65 ..     293     305 ..     262     320 .. 0.52
   3 ?   -2.2   0.0       5.4   5.1e+03      57      82 ..     381     402 ..     356     422 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
  OKR_DC_1_N  12 alekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFllaetrtsedvpadvlreidgfie 91 
                 +l++eg++v++++s  D+l ++++  +i+ v+ ++     +  +l+ ei++r   lPv +l+    +  +p  v +  +g++ 
  EHT99576.1  24 RLSSEGYQVTTAASGPDALRLLQK-EKIDLVISDLRmdeMDGLALFGEIQKRHMGLPVIILTA---HGSIPEAVAATQQGVFS 102
                 6899******************98.89*****9998878788899****************97...77777777777777665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6
  OKR_DC_1_N  53 lldeirernedlP 65 
                 l+  ++  n ++P
  EHT99576.1 293 LFYRLNVVNLKIP 305
                 4444444444444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.4
  OKR_DC_1_N  57 irernedlPvFllaetrtsedvpadv 82 
                 ++  n  lP F+ a+    +++++++
  EHT99576.1 381 LSGENSALPTFVEAR----NQFELNY 402
                 555678888888777....3444444 PP

>> UPF0175  Uncharacterised protein family (UPF0175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.4e-05     0.089      38      63 ..     416     441 ..     407     444 .] 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.4e-05
     UPF0175  38 kAaelaglsrveflelLarrgiplin 63 
                  Aa+lag +r ef++lL+r++ +  +
  EHT99576.1 416 NAARLAGRNRTEFYKLLSRHELDASD 441
                 69******************988655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.12      31      90 ..     140     200 ..     117     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
   IstB_IS21  31 dkrkvkeLatlsfiekke.nivllGpsGvGKshlaialgveavraglsvlfvrvedLveel 90 
                 +++ ++ L + + +++++ ++++ G+sG+GK  la a+  +  ra++  + +   +L e+l
  EHT99576.1 140 NPQMLRLLEQAHMVAQSDvSVLINGQSGTGKEVLAQAIHAASPRADKPFIAINCGALPEQL 200
                 445566677777787766257788**************99988888766666666666555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.15      46      86 ..     156     194 ..     134     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
       TIP49  46 kklaGravLlaGpsgtGktalaiaiskelg.edvpfvalsgs 86 
                       +vL+ G+sgtGk  la ai  +   +d pf+a++ +
  EHT99576.1 156 SD---VSVLINGQSGTGKEVLAQAIHAASPrADKPFIAINCG 194
                 33...35******************77665489999999865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.018        17       7      48 ..     159     194 ..     153     210 .. 0.84
   2 ?    4.8   0.1     0.035        33      44     118 ..     277     359 ..     249     391 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.018
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlp 48 
                 ++++ G+sGtGK +l++ ++   +++      +++++ +++ 
  EHT99576.1 159 SVLINGQSGTGKEVLAQAIHAASPRA------DKPFIAINCG 194
                 67899*************99998765......8888888876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.035
      AAA_22  44 fvtlpsstsskdllrellralglelka.....erlsseell.ealeqalrarav..ielliiDEaqhlrseealeeLrsllnl 118
                 + +lp+ ++  +++++l+  l++ + +     +r +   ll ++l +++ +r++  ++ + +D + +l+s+    ++r+l+n+
  EHT99576.1 277 HRDLPKAMEKNEFREDLFYRLNVVNLKipalhQRTEDIPLLaNHLLRQAADRHKpqVRSFSVDAMKRLISASWPGNVRQLVNV 359
                 55789999999999999999999999999655333333333355555555555589999999999998843333333333443 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00084      0.79      93     133 ..      76     122 ..      70     123 .. 0.83
   2 ?   -0.8   0.0         2   1.9e+03      93     107 ..     184     198 ..     144     219 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00084
                      TT-EEEE-TGGG.TTT--..TTSS...EE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  93 aglpvVatdvgg.iaevv..geng...llvppgdpealaeailrLle 133
                      +glpv+  ++ g i+e+v   ++g   +l +p d +al +ai + l+
       EHT99576.1  76 MGLPVIILTAHGsIPEAVaaTQQGvfsFLTKPVDRDALYKAIDEALA 122
                      9****999886549**999855566669**************99886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2
                      TT-EEEE-TGGGTTT CS
  Glyco_trans_1_4  93 aglpvVatdvggiae 107
                      a +p +a ++g+++e
       EHT99576.1 184 ADKPFIAINCGALPE 198
                      456666666666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.19      20      69 ..     144     193 ..     128     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
       AAA_7  20 vrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinf 69 
                 +r+    +++ +++ +vl+ G++GtGK v+++ +  + ++ +  ++ in+
  EHT99576.1 144 LRLLEQAHMVAQSDVSVLINGQSGTGKEVLAQAIHAASPRADKPFIAINC 193
                 55556677889999******************988888877766666665 PP

>> IDEAL  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8    0.0006      0.57      11      25 ..     110     124 ..     109     124 .. 0.93
   2 ?   -1.4   0.0       2.1     2e+03      24      33 ..     422     431 ..     420     431 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0006
       IDEAL  11 rekLlreIDeALdnr 25 
                 r+ L++ IDeAL +r
  EHT99576.1 110 RDALYKAIDEALAQR 124
                 789*********998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
       IDEAL  24 nrDkeaFleL 33 
                  r++ +F++L
  EHT99576.1 422 GRNRTEFYKL 431
                 59******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3385.67
//
Query:       EHT99577.1  [L=204]
Description: putative alpha helix protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-56  190.3   9.8    5.1e-50  169.8   3.0    2.0  2  Lipoprotein_20  YfhG lipoprotein
     0.0053   16.8   0.0      0.008   16.2   0.0    1.4  1  LAGLIDADG_WhiA  WhiA LAGLIDADG-like domain


Domain annotation for each model (and alignments):
>> Lipoprotein_20  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   3.0   5.7e-54   5.1e-50       1     130 [.      39     168 ..      39     169 .. 0.99
   2 !   30.5   1.6   3.4e-11     3e-07     143     168 ..     162     187 ..     161     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 5.7e-54
  Lipoprotein_20   1 peqkvadyrlaeCeklwqleskealenaLyWlramdCadrlssaeareeakrltedsWdeafkqsiLlanaeitlaerrkllerlnaysaqfpas 95 
                     pe++++dy ++ C+++w++e+++al n+LyW+r +dCa+rls+aear+ea+r++ dsW++afkq++L+an+++t+ err+++++l++ys+qfp++
      EHT99577.1  39 PETRLVDYLTTRCSDIWHIENTAALANPLYWMRSIDCAERLSPAEARAEAHRWPVDSWSRAFKQGVLMANGNVTPLERRDYITELDSYSEQFPQN 133
                     789******************************************************************************************** PP

  Lipoprotein_20  96 lrpllqlWreqqalqlalaeeraryqrlqeesdsk 130
                     lr+l+qlWr++qa+ql l++ r+ry +lq+ sd++
      EHT99577.1 134 LRALIQLWRSNQAAQLDLSALRSRYVHLQQLSDTQ 168
                     ********************************986 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 3.4e-11
  Lipoprotein_20 143 aeLeettrKLenLtdiERqLssRkqa 168
                     ++L++t+ KLe+LtdiERqLssRk +
      EHT99577.1 162 QQLSDTQSKLERLTDIERQLSSRKTS 187
                     589*********************84 PP

>> LAGLIDADG_WhiA  WhiA LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.9e-07     0.008       2      58 ..      98     159 ..      97     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.9e-07
  LAGLIDADG_WhiA   2 kaflrGaflasGsindpekk.yhLEivspdeelaeqlqklln....efeleakilerrkkyv 58 
                     +af +G+++a+G ++  e++ y  E+ s +e++ ++l  l++    +   +  ++  r++yv
      EHT99577.1  98 RAFKQGVLMANGNVTPLERRdYITELDSYSEQFPQNLRALIQlwrsNQAAQLDLSALRSRYV 159
                     7899*************9999****************9999966544466666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1590.98
//
Query:       EHT99578.1  [L=475]
Description: putative sensor histidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-17   63.5   0.1    7.4e-17   61.9   0.0    1.9  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.2e-13   48.2   2.2    3.5e-12   46.2   2.2    2.1  1  HisKA        His Kinase A (phospho-acceptor) domain
    0.00035   20.9   0.6     0.0013   19.0   0.0    2.4  3  HAMP         HAMP domain
     0.0015   18.4   0.0     0.0027   17.6   0.0    1.4  1  HATPase_c_5  GHKL domain
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.39   10.7   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   4.6e+03       3      19 ..     298     314 ..     296     353 .. 0.64
   2 !   61.9   0.0   2.1e-20   7.4e-17       5     109 ..     364     469 ..     360     472 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHH CS
   HATPase_c   3 ekrLrqiisnlvdNavk 19 
                 +++L+++i +l+d   +
  EHT99578.1 298 SRHLQHLIEQLLDYNRR 314
                 67788888888775444 PP

  == domain 2  score: 61.9 bits;  conditional E-value: 2.1e-20
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTS..TSSSHHHHHHHHHHHHTTTEEEEEEETTTE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrgg..ggtGlGlsivkklvelmgGeiwvesepgrG 101
                  L+ +i+nl +Nav++ +++g+i+++ +++ d++ i+v ++G  ip+ ++ ++fe+f q +s +r+g  +g+GlGlsi+k   ++m+G++++ s+++  
  EHT99578.1 364 LLMSVIDNLYSNAVNYGNESGNIWLRSQQQGDTVIIEVANSGTPIPEHEQAMIFEPFFQ-GSHQRKGpvKGSGLGLSIAKDCLRRMHGNLQLVSRDDAD 461
                 6899************88********995559***************************.666666445************7777***********888 PP

                 EEEEEEEE CS
   HATPase_c 102 ttftftlp 109
                  +f+++l 
  EHT99578.1 462 VCFRIELN 469
                 88888775 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   2.2   9.8e-16   3.5e-12       2      63 ..     250     313 ..     249     316 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 9.8e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC....T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre..gklteelkeyletiesearrldhlvedlLdlsr 63 
                 + +fl +++HEL+tPL++++  + +L +e  g l++e+ke + ++  ++r+l+hl+e+lLd+ r
  EHT99578.1 250 RHEFLRHLSHELKTPLASLREGTALLADEvaGVLNPEQKEIVSILDTSSRHLQHLIEQLLDYNR 313
                 679****************************99****************************988 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.5   8.8e+03      37      48 ..     132     143 ..     127     145 .. 0.72
   2 !   19.0   0.0   3.7e-07    0.0013       1      52 [.     192     244 ..     192     245 .. 0.96
   3 ?   -3.2   0.0       3.4   1.2e+04       6      21 ..     261     276 ..     257     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHH CS
        HAMP  37 iGeLarafNaMl 48 
                 +G  a+a+++++
  EHT99578.1 132 MGSAAQALDRFS 143
                 577788888775 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 3.7e-07
                 HHHHTTHHHHHHHHHHHHHHTTT.BTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaG.dldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 l++r i+ P++ ++r ++r+++G +l ++   +g+ E++ L++ +  +++rL+
  EHT99578.1 192 LFTRMIIGPVKSVERMINRLGEGrELGSSMVFRGPRELRSLGQRIVWLSERLH 244
                 689***************************99*******************97 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.4
                 THHHHHHHHHHHHHHT CS
        HAMP   6 ilrPLrrLaraarria 21 
                 +  PL  L++ ++ +a
  EHT99578.1 261 LKTPLASLREGTALLA 276
                 5678888888877666 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.5e-07    0.0027       5      91 ..     364     458 ..     360     469 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.5e-07
  HATPase_c_5   5 dlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg....ek........kklesskskkeehGiGlksireivkkykgnlsieae 90 
                   l++++ nl  NA++  ++       I l  +++ +++ii++ Ns +     e+        +  +++k   +  G+Gl+  + ++++ +gnl++   
   EHT99578.1 364 LLMSVIDNLYSNAVNYGNESG----NIWLRSQQQGDTVIIEVANSGTPipehEQamifepffQGSHQRKGPVKGSGLGLSIAKDCLRRMHGNLQLVSR 457
                  577888888888888777755....7*******************65555453345565566777788888999******************995444 PP

  HATPase_c_5  91 d 91 
                  d
   EHT99578.1 458 D 458
                  3 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.39      39     106 ..     372     442 ..     364     449 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
  HATPase_c_2  39 actNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalik 106
                  + +Nav++++++   g + +r +++++++ +eva+sG + + +++++  e  p        k++ k +G+Gl + k
   EHT99578.1 372 LYSNAVNYGNES---GNIWLRSQQQGDTVIIEVANSGTPIPEHEQAMIFE--PffqgshqrKGPVKGSGLGLSIAK 442
                  568*******85...77**********************88888777655..344777877888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3263.42
//
Query:       EHT99579.1  [L=1296]
Description: phosphoribosylformyl-glycineamide synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-104  348.6   0.0   2.9e-104  347.8   0.0    1.3  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
    1.4e-45  155.2   2.0    1.3e-30  106.6   0.0    2.5  2  AIRS_C          AIR synthase related protein, C-terminal doma
    8.1e-45  151.5   0.0    1.6e-44  150.5   0.0    1.5  1  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe
    5.8e-23   81.2   0.1    2.3e-22   79.3   0.0    2.2  3  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe
  ------ inclusion threshold ------
      0.039   14.6   4.6       0.48   11.1   0.0    4.0  4  AIRS            AIR synthase related protein, N-terminal doma


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.8   0.0    8e-108  2.9e-104       1     258 [.    1040    1293 ..    1040    1294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 347.8 bits;  conditional E-value: 8e-108
    GATase_5    1 kpkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiC 97  
                  +p+va+lre+Gvn+++emaaaf++aGf+avdvhmsdll+gr++l++fq l+++GGfsygD+lg+g+gwaks+l+n+++r+++e+f++r+ tlaLG+C
  EHT99579.1 1040 RPRVAVLREQGVNSHVEMAAAFDRAGFTAVDVHMSDLLAGRIDLERFQALVACGGFSYGDVLGAGEGWAKSILFNPRVRDQFEAFFHRPQTLALGVC 1136
                  79*********************************************************************************************** PP

    GATase_5   98 nGfqlLvklg.lvpggeieeaeksptltrNksgrfesrlvsvvvsekspsvflkgmeglslp..vahGeGrfvfkseevlkeleangqvalrYvdee 191 
                  nG+q++++l+ l+pg     +e +p+++rN+s+rfe+r++ ++v ++sps++l+gm+g+++p  v+hGeG +++++ + l++le++g+valr+vd++
  EHT99579.1 1137 NGCQMMSNLReLIPG-----SELWPRFVRNQSERFEARFSLIEV-AASPSLLLDGMAGSRMPvaVSHGEGFVEVRDGTHLAALESKGLVALRFVDNS 1227
                  ***************.....9******************87765.9****************999******************************** PP

    GATase_5  192 gkpteeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipeeeeeevspwlrlFenavk 258 
                  gk+te+yp+NPNgSp+gi+++t+++GRv+++mpHperv+++v++s +++ e+ e spw+r+F+na+k
  EHT99579.1 1228 GKVTETYPANPNGSPNGITAVTNESGRVTIMMPHPERVFRTVSNS-WHPAEWGEDSPWMRIFRNARK 1293
                  *********************************************.666788767**********96 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   3.6e-34   1.3e-30       2     153 ..     432     588 ..     431     591 .. 0.96
   2 !   47.5   0.6   5.6e-16     2e-12      11     152 ..     834     966 ..     823     969 .. 0.84

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 3.6e-34
                 TTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTH CS
      AIRS_C   2 pGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidldkv 94 
                 +G +li++g+    +Glgg + s+ + ++ +++ld  +vq++++++e+++++v +++++l  ++++  +hDv++GGL++a +e++ ++g g +++l ++
  EHT99579.1 432 VGAKLIVLGGpamnIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLgdDNPILFIHDVGAGGLSNAMPELVSDGGRGGRFNLRDI 530
                 79999999999**********9999999999998877************************************************************** PP

                 HHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEEE CS
      AIRS_C  95 pifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeelsv 153
                    ++ +sple+++ e+++r+++av+pe+ +++ ai+e+e+ p +avIGe+t++++l++
  EHT99579.1 531 LSDEPGMSPLEVWCNESQERYVMAVAPEKLAEFAAICERERAP-FAVIGEATEEQHLTL 588
                 *****************************************97.***********9886 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 5.6e-16
                 T..SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHHHHHHH CS
      AIRS_C  11 s..lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdelespleml 107
                 +    lg+ +++ + ++l ++  d     + d++++    ++++al  +  +  a hD ++GGLl++laema+ + +g+ +d++   + + +   l +l
  EHT99579.1 834 NgaNTLGATALAQVYRQLGDKPAD-----VRDAQQLAGFFNAMQALVSQ-QKLLAYHDRSDGGLLVTLAEMAFTGHCGVDVDIA--ALGSDA---LAAL 921
                 244677777777777777777776.....99*****************8.**********************************..666654...89** PP

                 HCSTTTEEEEEEEHGGHHHHHHHHHHTTC.CCEEEEEEEEESSSEE CS
      AIRS_C 108 lsensGrllvavppeeadavlaileeegl.peaavIGevtakeels 152
                 ++e+ G  ++ +++++++ v +il+++gl +   v+G + ++++  
  EHT99579.1 922 FTEELG-AVIQIKAADREGVEQILAQHGLaQCSHVLGSAQPGDRFV 966
                 ******.67999999999***********87788889999888765 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   4.6e-48   1.6e-44       1     115 []      36     150 ..      36     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 4.6e-48
   FGAR-AT_N   1 eyvhfveleeelseeeravleqlLeygdkleeeeeegelllVvPRlGtiSpWsSkAtdIahncglekvkRiErgiayvlelkelseeelaalaalLhDr 99 
                 eyvhf++++++lse+e+++l++lL+yg++l+e++++g+lllV+PR+GtiSpWsSkAtdIahnc+l++v+R+Erg+a+++++ +l+e+++++l+alLhDr
  EHT99579.1  36 EYVHFADVSAPLSEDEKSRLQRLLKYGPSLAEHAPQGRLLLVTPRPGTISPWSSKATDIAHNCDLSHVRRLERGLAFYVQAPQLTETQWQTLSALLHDR 134
                 69************************************************************************************************* PP

   FGAR-AT_N 100 mtesvleeledaealF 115
                 m+e+v+++l++ae+lF
  EHT99579.1 135 MMETVYSDLHQAEQLF 150
                 ***************9 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.8e+04      12      32 ..      47      64 ..      46      67 .. 0.75
   2 !   79.3   0.0   6.4e-26   2.3e-22       1      50 []     171     220 ..     171     220 .. 0.98
   3 ?   -3.4   0.0       4.3   1.6e+04      20      34 ..     844     858 ..     842     858 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5
  FGAR-AT_linker 12 LsdeEidylqeafeklgrnPt 32
                    Ls++E ++lq     l+  P 
      EHT99579.1 47 LSEDEKSRLQRL---LKYGPS 64
                    899999999998...555555 PP

  == domain 2  score: 79.3 bits;  conditional E-value: 6.4e-26
  FGAR-AT_linker   1 LeeankelglaLsdeEidylqeafeklgrnPtdvElemfaqvwSEHCrHK 50 
                     L +an++lglaL+d+Eidyl  af+klgrnP+d+El+mfaq++SEHCrHK
      EHT99579.1 171 LVHANTSLGLALADDEIDYLLAAFTKLGRNPNDIELYMFAQANSEHCRHK 220
                     6789*********************************************9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.3
  FGAR-AT_linker  20 lqeafeklgrnPtdv 34 
                     l++++++lg +P dv
      EHT99579.1 844 LAQVYRQLGDKPADV 858
                     7788899*****997 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.48       3      54 ..     286     358 ..     258     419 .. 0.72
   2 ?    1.5   0.0      0.13   4.8e+02      17      39 ..     686     726 ..     675     804 .. 0.75
   3 ?   -0.4   0.1      0.51   1.8e+03      24      54 ..     898     931 ..     870     967 .. 0.70
   4 ?   -1.0   0.2       0.8   2.9e+03      50      50 ..    1049    1049 ..    1029    1079 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                 SE.EEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTT..TEEEEEEEEEEEEC...................H CS
        AIRS   3 aa.vvvttdshnrpvlvepvhfiGakavavnlsDlaam..GArPlalllslalp...................w 54 
                 aa +++++++hn+p++++p  + +a++ ++ ++D  a+  GA+P a l+ ++++                    
  EHT99579.1 286 AAhILMKVETHNHPTAISPWPG-AATGSGGEIRDEGATgrGAKPKAGLVGFSVSnlripgfeqpweedfgkpaR 358
                 334699****************.***********8765338****99999998877777666665555555550 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
                 CCTCCCC..................HHHHHHHHHHHHHHTT CS
        AIRS  17 lvepvhf..................iGakavavnlsDlaam 39 
                  ++ +h+                   +++av+++l +laa+
  EHT99579.1 686 SLDSYHGeafalgerapvalldfaaSARLAVGEALTNLAAT 726
                 566666666666777777777778899***********975 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC...H CS
        AIRS  24 iGakavavnlsDlaamGArPlalllslalp...w 54 
                 ++ ++ +++  D+aa G + la+l +  l+   +
  EHT99579.1 898 MAFTGHCGVDVDIAALGSDALAALFTEELGaviQ 931
                 46666666777**********9887766666662 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.8
                  E CS
        AIRS   50 l 50  
                   
  EHT99579.1 1049 Q 1049
                  1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 8645.71
//
Query:       EHT99580.1  [L=485]
Description: lytic transglycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-35  122.2   0.0    3.3e-35  121.6   0.0    1.2  1  SBP_bac_3       Bacterial extracellular solute-binding protei
    3.2e-23   81.6   0.0    6.3e-23   80.7   0.0    1.4  1  SLT             Transglycosylase SLT domain
     0.0013   18.1   0.1       0.26   10.6   0.0    2.4  2  LysR_substrate  LysR substrate binding domain
     0.0017   18.1   0.1     0.0034   17.1   0.1    1.6  1  Lysozyme_like   Lysozyme-like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0   7.4e-39   3.3e-35       6     225 .]      48     267 ..      45     267 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 7.4e-39
                 -S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTCCHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   6 dadypPfsykdengeltGfdvdlakaiakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskissik 103
                 ++ + P +y++ n+ ++G+d++lak +a+ lgv++e++   ++++l++al++gk+D+++a++ ++ eR  ++    +y+s +q+l++r + +++++++ 
  EHT99580.1  48 STVNSPLTYYTVNKAPAGMDYELAKRFARYLGVRLEITVRaNISDLFDALDDGKADLLAAGLIYNNERLNRYQTGPSYYSVSQQLIYRVD-KTRPKNLG 145
                 34588*********************************988***********************************************76.45556665 PP

                 SCGCGTTSEEEEETTSHHHHHHHHHHHC.....TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 104 sladLkgkkvgvqagstaeellkeelkk.....gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdse 197
                    dLkg+ ++v  gs++ ++lk++ ++     +  i + ++  ++l+a+++g+ d++++ds+++a l++ +p   v   +++ +++  +++ r++d++
  EHT99580.1 146 ---DLKGR-LVVASGSAYLSTLKSARAEhypdlDWAISTDQSPKALLEAVAEGKLDYTIGDSVTIALLQRIHPQMAVAF-DVTDEEPVTWYMPRESDDS 239
                 ...****8.**************97777988777777667777777999******************************.******************* PP

                 HHHHHHHHHHHHHHTTHHHHHHHHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 198 LrkainkalaelkadgtlakisekWfge 225
                 L +a+ ++++ + ++g +a+++ek++g+
  EHT99580.1 240 LNAAMLDFFNGMGEEGAMARLEEKYLGH 267
                 *************************995 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   1.4e-26   6.3e-23       7     112 ..     296     401 ..     293     405 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 1.4e-26
                 HHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTT......HHHHHHHHHHH-HH CS
         SLT   7 ekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyng......slllalaAYNaGeg 99 
                 + + +++++llaai  +ES++np+A+s++g  G+m+++++ta +       ++ +++dPe++i+ g +yL+++++++ +      + ++alaAYN G +
  EHT99580.1 296 KYASNIDWRLLAAISYQESHWNPQATSPTGVRGMMMLTRNTADS------VEVGDRTDPEQSIRGGSQYLQNMMDKVPQsipedeRIWFALAAYNMGYA 388
                 56889***************************************......4689********************************************* PP

                 HHHHTTHSSHHHH CS
         SLT 100 tvkkakkevkkke 112
                 +  +a k + k+ 
  EHT99580.1 389 HMLDARKLTAKQG 401
                 *999999887765 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0029        13      30      63 ..      75     109 ..      68     124 .. 0.80
   2 !   10.6   0.0   5.8e-05      0.26      20      63 ..     159     203 ..     145     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0029
                     HHSTTEEEEEEEESH.HHHHHHHHTTSSSEEEEES CS
  LysR_substrate  30 aryPevelelvegds.eelldllaegelDlairag 63 
                     ary +v+le+++  + ++l d+l++g++Dl  +++
      EHT99580.1  75 ARYLGVRLEITVRANiSDLFDALDDGKADLLAAGL 109
                     89999999999998889************976655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.8e-05
                     HHHHHHHHHHHHSTTEEEEEEEESH.HHHHHHHHTTSSSEEEEES CS
  LysR_substrate  20 llppllarfraryPevelelvegds.eelldllaegelDlairag 63 
                      l  l ++ +++yP+++  +++++s  +ll+++aeg+lD  i   
      EHT99580.1 159 YLSTLKSARAEHYPDLDWAISTDQSpKALLEAVAEGKLDYTIGDS 203
                     555566666899************989************999765 PP

>> Lysozyme_like  Lysozyme-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.5e-07    0.0034      56      98 ..     345     390 ..     290     447 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.5e-07
  Lysozyme_like  56 ikdpeeSikqGvkylaealekakekgv...dletavQaYNfGkgYi 98 
                     +dpe+Si+ G +yl+++++k  ++ +   +++ a+ aYN+G +++
     EHT99580.1 345 RTDPEQSIRGGSQYLQNMMDKVPQSIPedeRIWFALAAYNMGYAHM 390
                    589******************9988778889***********8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3699.93
//
Query:       EHT99581.1  [L=164]
Description: tRNA-specific adenosine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-34  117.4   0.0    4.5e-34  117.1   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
    6.2e-28   96.6   0.0    8.8e-28   96.2   0.0    1.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    5.5e-05   23.3   0.0    0.00021   21.4   0.0    1.8  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
    0.00022   21.3   0.0    0.00044   20.3   0.0    1.6  1  Bd3614-deam      Bd3614-like deaminase
     0.0019   18.3   0.0     0.0042   17.2   0.0    1.5  2  APOBEC2          APOBEC2
     0.0035   17.5   0.0     0.0057   16.8   0.0    1.3  1  NAD2             Novel AID APOBEC clade 2
     0.0061   16.7   0.0       0.03   14.4   0.0    1.8  2  APOBEC3          APOBEC3
     0.0093   16.1   0.0      0.019   15.0   0.0    1.5  2  NAD1             Novel AID APOBEC clade 1
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.016   15.1   0.0    1.3  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   2.3e-37   4.5e-34       2     138 .]       5     151 ..       4     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 2.3e-37
  MafB19-deam   2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvy 99 
                  ++e ++r al +++ a + +e+++gav v++++vi+ g n+  +++++taHaEi al+q  k l++ rl d+tlyvtlepC mCaga+v +++ +lvy
   EHT99581.1   5 QDEYWMRRALTLAQRAWDEGEVPVGAVLVHGDRVIGEGWNRPIGQHDPTAHAEIMALRQGGKVLENYRLLDTTLYVTLEPCVMCAGAMVHSRIGRLVY 102
                  6789********************************************************************************************** PP

  MafB19-deam 100 gagnpks......lnkLkvkekngrvelv....eddckeilkgffkklr 138
                  ga + k+      + +L     n++v+l     ed+c+++l++ff+  r
   EHT99581.1 103 GAHDVKTgaagslIDVLGHPGMNHQVRLDhgvlEDACAALLSDFFRMRR 151
                  ******9*********************99***************9765 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   4.4e-31   8.8e-28       2     100 ..       4     103 ..       3     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 4.4e-31
                      HHHHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT- CS
  dCMP_cyt_deam_1   2 ekdekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsgi 94 
                      e+de++++ al++a++a ++ +++VGav+v+ +++i++g+n+   ++++t+HAE++A+++ +k  ++++l ++tlyvtlePC mCa a+++s+i
       EHT99581.1   4 EQDEYWMRRALTLAQRAWDEGEVPVGAVLVHGDRVIGEGWNRPIGQHDPTAHAEIMALRQGGKVlENYRLLDTTLYVTLEPCVMCAGAMVHSRI 97 
                      689****************************99*******************************7899************************** PP

                      SEEEEE CS
  dCMP_cyt_deam_1  95 kkvvvg 100
                       ++v+g
       EHT99581.1  98 GRLVYG 103
                      ****97 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     1e-07   0.00021      12      61 ..      43      93 ..      35      96 .. 0.84
   2 ?   -1.2   0.1       1.1   2.1e+03      77      92 ..     144     159 ..     137     163 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1e-07
       SNAD4 12 lekgvlknkke.haEllflekikseldpsqeyrvtwylswsPCaeCaekia 61
                +++ + +++ + haE++ l++  + l++ +  + t+y++  PC+ Ca +++
  EHT99581.1 43 WNRPIGQHDPTaHAEIMALRQGGKVLENYRLLDTTLYVTLEPCVMCAGAMV 93
                555555554456**********99***********************9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
       SNAD4  77 arLyfweeenregLrs 92 
                 + ++ ++++++++Lr+
  EHT99581.1 144 SDFFRMRRQQQKALRQ 159
                 4456677788888886 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.2e-07   0.00044      77      97 ..      75      95 ..      43     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.2e-07
  Bd3614-deam 77 garllvtlqcCkmCAalvvaa 97
                 +++l+vtl++C mCA+ +v+ 
   EHT99581.1 75 DTTLYVTLEPCVMCAGAMVHS 95
                 89*************998875 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.1e-06    0.0042      47      91 ..      51      94 ..      37      97 .. 0.88
   2 ?   -2.7   0.1       2.7   5.4e+03     110     123 ..     147     160 ..     135     163 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
     APOBEC2 47 ekkcHaEllflskvkkkkleekkeykvtwyvswsPCaeCaeevae 91
                ++++HaE++ l++  k  le+ +  + t+yv+  PC+ Ca  +++
  EHT99581.1 51 DPTAHAEIMALRQGGK-VLENYRLLDTTLYVTLEPCVMCAGAMVH 94
                4678*********999.8999999****************99875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
     APOBEC2 110 fleeeeyqegLrsL 123
                 f  ++++q++Lr+ 
  EHT99581.1 147 FRMRRQQQKALRQA 160
                 44466667777765 PP

>> NAD2  Novel AID APOBEC clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.8e-06    0.0057      49      94 ..      49      93 ..      37      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.8e-06
        NAD2 49 qkesklhaellfLskfvlrqlelaqeykvtwyvsWsPCpeCaaeva 94
                q++   hae++ L++   + le ++    t yv+  PC+ Ca+ ++
  EHT99581.1 49 QHDPTAHAEIMALRQG-GKVLENYRLLDTTLYVTLEPCVMCAGAMV 93
                456789********98.699**********************9876 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-05      0.03      29      71 ..      52      93 ..      39      96 .. 0.89
   2 ?   -0.5   0.0      0.61   1.2e+03      65      80 ..     138     153 ..     137     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
     APOBEC3 29 ekkHAEerfidkirslnldslkqykitcylswsPcpkCaeelv 71
                 + HAE++++++  +  l++ +    t+y++  Pc  Ca  +v
  EHT99581.1 52 PTAHAEIMALRQGGK-VLENYRLLDTTLYVTLEPCVMCAGAMV 93
                568*********999.99*********************9988 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.61
     APOBEC3  65 kCaeelveflkensel 80 
                  Ca+ l +f++ +++ 
  EHT99581.1 138 ACAALLSDFFRMRRQQ 153
                 6999999999987765 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.7e-06     0.019      47      90 ..      52      93 ..      38      96 .. 0.84
   2 ?   -3.3   0.1       4.2   8.3e+03     110     122 ..     148     159 ..     139     162 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.7e-06
        NAD1 47 skcHaEllflnkikslklldpsqkykvtwylswSPCseCaskla 90
                 ++HaE++ l++    k+l++ +  + t+y++  PC  Ca  ++
  EHT99581.1 52 PTAHAEIMALRQG--GKVLENYRLLDTTLYVTLEPCVMCAGAMV 93
                345******9998..555679999****************9887 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.2
        NAD1 110 eteeeenqegLrs 122
                  +  +++q++Lr+
  EHT99581.1 148 RMR-RQQQKALRQ 159
                 333.346777775 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   8.1e-06     0.016      47      94 ..      53      94 ..      18      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.1e-06
                TBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH....HHHHHHH CS
    APOBEC_N 47 skHaEelflediedqelrepkkkyeitlYvswsPChessdeCaeklaa 94
                 +HaE + l++  ++ l+ + +    tlYv++ PC+     Ca ++++
  EHT99581.1 53 TAHAEIMALRQGGKV-LE-NYRLLDTTLYVTLEPCVM----CAGAMVH 94
                79*****99975443.33.579***************....*999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1287.32
//
Query:       EHT99582.1  [L=212]
Description: phosphatidylglycerol-phosphate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-13   50.9   0.0    3.2e-13   50.5   0.0    1.1  1  HAD       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.8e-17   3.2e-13       1     187 [.      10     193 ..      10     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.8e-17
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllal....frellrldraglaelleallaglseelaaelerfvaevirpk..lldpgalel 93 
                 ++fD+DgTL ++d++  ++r+llrr+++    +l++ +ll +    +   +r  r     ll+++  g se    +le+ +a++ r++  ++ p + ++
  EHT99582.1  10 VFFDLDGTLHQQDMFGTFMRYLLRRKPL---NLLLVVPLLPVvgagLLFKGRAARWPMSLLLWSITFGRSETTLLRLEAEFAQWFRQRvkAF-PVVQKR 104
                 79*********************99885...5555555555556686677777789999***********9998888888888888885557.999999 PP

         HAD  94 laahraaGd.rvvvvSgglrplvepll.a..elgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 l++ ++  d  v++++g+++ lve +  +  +l    ++a+++ +   l g+  +    + g++kv  l+e       g +l     y+Ds +D pll
  EHT99582.1 105 LSEYLSSDDaDVWLITGSPQSLVEQVYyDsaFLPRVKLIASQMQRG--LGGR--VLKLRCLGHEKVVQLEE-----QIGTPLQLYSGYSDSKQDNPLL 193
                 9988877777****************966646669999***77763..5555..99999************.....5555555577********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1749.90
//
Query:       EHT99583.1  [L=279]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-27   94.0   0.8    9.7e-27   93.4   0.8    1.3  1  SIS              SIS domain
    1.1e-26   92.6   0.1      3e-26   91.2   0.1    1.8  1  HTH_6            Helix-turn-helix domain, rpiR family
    1.8e-06   28.0   0.4     0.0016   18.4   0.1    2.5  2  SIS_2            SIS domain
     0.0044   17.1   0.0      0.011   15.9   0.0    1.7  1  HupF_HypC        HupF/HypC family
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.047   13.7   0.0    2.1  2  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.013   15.3   1.1       0.33   10.8   0.1    2.9  3  IF2_N            Translation initiation factor IF-2, N-termin
      0.029   14.2   0.3      0.055   13.3   0.3    1.6  1  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do
      0.033   14.5   1.4       0.63   10.4   0.0    3.0  4  Rrf2             Transcriptional regulator
      0.076   13.0   0.2       0.33   10.9   0.0    2.1  2  HTH_11           HTH domain
      0.098   12.6   0.0       0.48   10.4   0.0    2.2  2  MarR             MarR family


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.8   5.4e-30   9.7e-27       2     130 ..     126     254 ..     125     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 5.4e-30
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 L  a+ri+++G+G+s+ +ak++++kl++ig ++v+ +d ++l  + ++ ++++d++++is++ge ++ ++aa++a + ga ++a+T+ + ++l++ a++
  EHT99583.1 126 LKRARRILLVGIGASGLVAKDFSWKLMKIGINAVAEQDMHALLAS-VQAMSSGDVLLAISYTGERREINLAAQEAVRVGADVLAFTGFTPNTLQQCATH 223
                 889******************************************.***************************************************** PP

                 EEEEEEECHC.SSSHCHHHHHHHHHHHHHHH CS
         SIS 101 alyinaepet.lvastksltaqlaaldalav 130
                 +ly+ ae+++   a+++s+taqla++d+l++
  EHT99583.1 224 CLYTVAEEQStRSAAISSTTAQLALTDLLFM 254
                 *****************************97 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.1   1.7e-29     3e-26       1      76 [.       1      76 [.       1      77 [. 0.96

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1.7e-29
                --HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHHHHS CS
       HTH_6  1 mnllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLakelak 76
                m  l +i++ + +l+ +e+++a+++l++pd a++ls+++lA++a+vS++++v+fa+kLG+kGF++lklaL+++la 
  EHT99583.1  1 MSSLLRIRQLYPSLALNERRLADFLLSQPDRARHLSSQKLAEEAGVSQSSVVKFAQKLGYKGFPALKLALSESLAD 76
                567899*******************************************************************997 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.002       3.6       7      68 ..     101     161 ..      98     167 .. 0.81
   2 !   18.4   0.1   9.2e-07    0.0016      96     138 .]     168     211 ..     160     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
                 HHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE-- CS
       SIS_2   7 teilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferial 68 
                 te l++i++t   + e+  +++ + l++ +++l+ G G S + a+++ +++ ++ +++++a+
  EHT99583.1 101 TEKLSAIRATLDINSEEKLNAVLQLLKRARRILLVGIGASGLVAKDFSWKLMKI-GINAVAE 161
                 56677777777777778888999999*********************9999875.5565555 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 9.2e-07
                 HHH.TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  96 lrl.vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 l++ + +++gDvLl iS  G+   +  aa++a ++g+ v A+t+
  EHT99583.1 168 LASvQAMSSGDVLLAISYTGERREINLAAQEAVRVGADVLAFTG 211
                 44414569**********************************97 PP

>> HupF_HypC  HupF/HypC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.2e-06     0.011      18      53 ..     182     217 ..     166     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.2e-06
                 EEECTTEEEEEEGTTCTTB-TT-EEEEETTEEEEEE CS
   HupF_HypC  18 lvdvgGvrrevslalveevkvGdyVLvhvGfAieki 53 
                  +++ G+rre++la  e v+vG  VL + Gf  + +
  EHT99583.1 182 AISYTGERREINLAAQEAVRVGADVLAFTGFTPNTL 217
                 57888**************************76665 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.6e-05     0.047       2      45 ..      20      58 ..      19      63 .. 0.85
   2 ?   -1.8   0.0       1.8   3.2e+03      35      51 ..     116     132 ..     111     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.6e-05
                HHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  2 RlArfLlrlaeraggeielpltqeelAsmlGltretvsrilseL 45
                RlA fLl   +ra      +l+ + lA+  G+++++v +  ++L
  EHT99583.1 20 RLADFLLSQPDRA-----RHLSSQKLAEEAGVSQSSVVKFAQKL 58
                9*****9765553.....589****************9999888 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHTTSE CS
   HTH_Crp_2  35 retvsrilseLkregli 51 
                  e ++ +l+ Lkr+  i
  EHT99583.1 116 EEKLNAVLQLLKRARRI 132
                 57888899999887655 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00018      0.33       8      31 ..      39      61 ..      38      62 .. 0.91
   2 ?    1.9   0.1      0.11     2e+02      35      53 ..      83     101 ..      74     102 .. 0.88
   3 ?   -3.2   0.0       4.4   7.8e+03      23      31 ..     150     157 ..     144     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
       IF2_N  8 eLAkeLgvkskevikkLfkelGie 31
                 LA+e gv+   v+k++ k lG++
  EHT99583.1 39 KLAEEAGVSQSSVVKFAQK-LGYK 61
                7****************66.**96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
       IF2_N  35 hsssLDeetaeliaeefgi 53 
                 h+++L+++ ++++ e++ +
  EHT99583.1  83 HNQILSDDPLKAVGEKLLT 101
                 9**********99999875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.4
       IF2_N  23 kLfkelGie 31 
                 kL+k  Gi 
  EHT99583.1 150 KLMK-IGIN 157
                 7888.8987 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   3.1e-05     0.055      19      94 ..      98     171 ..      81     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
  Peptidase_M17_N  19 ealagllsellkegdftGkagevlvlralsgekakrvllVGLGkeeeltaealrkaagaaaralkgakvttiaval 94 
                      + l+++ls++ +++d++ ++   +vl+ l   +a+r+llVG+G+++ + ++   k+++ +++a++++ +  +++++
       EHT99583.1  98 KLLTEKLSAIRATLDINSEEKLNAVLQLLK--RARRILLVGIGASGLVAKDFSWKLMKIGINAVAEQDMHALLASV 171
                      667889999999999997777777777777..49************999988888888888888887766666555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035      0.63      18      53 ..      27      62 ..      21      64 .. 0.85
   2 ?   -3.0   0.1       5.4   9.7e+03      39      52 ..     116     129 ..     103     132 .. 0.59
   3 ?    1.0   0.1      0.31   5.5e+02       8      29 ..     219     240 ..     215     258 .. 0.71
   4 ?   -0.0   0.0      0.65   1.2e+03       4      34 ..     241     271 ..     239     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
                HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTT CS
        Rrf2 18 akeeeeepvsseeiaerqnispsylekilakLrkag 53
                ++ ++ +++ss+++ae+ ++s+s + k  +kL  +g
  EHT99583.1 27 SQPDRARHLSSQKLAEEAGVSQSSVVKFAQKLGYKG 62
                45556667************************9887 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHHHT CS
        Rrf2  39 psylekilakLrka 52 
                 ++ l  +l+ L++a
  EHT99583.1 116 EEKLNAVLQLLKRA 129
                 44566667777666 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHSSTCC-B-HH CS
        Rrf2   8 eyalhallyLakeeeeepvsse 29 
                 ++a+h+l+  a+e++ ++++++
  EHT99583.1 219 QCATHCLYTVAEEQSTRSAAIS 240
                 5788888888888876654433 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.65
                 -HHHHHHHHHHHHHHHSSTCC-B-HHHHHHH CS
        Rrf2   4 sskteyalhallyLakeeeeepvsseeiaer 34 
                 s+  ++al+ ll++a+ +++   +s++i ++
  EHT99583.1 241 STTAQLALTDLLFMALVQNDPERASSHIRHS 271
                 6778899999****99999888788777665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.33      15      43 ..      34      62 ..      25      65 .. 0.83
   2 ?   -1.9   0.2       1.9   3.5e+03       2      13 ..     119     130 ..     118     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
      HTH_11 15 pisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                ++s+++LAee +vS + v++  ++L  +g
  EHT99583.1 34 HLSSQKLAEEAGVSQSSVVKFAQKLGYKG 62
                59****************99777765555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
      HTH_11   2 llqilelLlear 13 
                 l+++l+lL++ar
  EHT99583.1 119 LNAVLQLLKRAR 130
                 78899***9887 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.48      17      46 ..      34      63 ..      24      63 .. 0.88
   2 ?   -1.8   0.0       1.8   3.2e+03       7      23 ..     223     239 ..     221     247 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                TEEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        MarR 17 plsvseLakklgvskstvtrvldrLekkGl 46
                 ls ++La+  gvs+s+v +++ +L  kG+
  EHT99583.1 34 HLSSQKLAEEAGVSQSSVVKFAQKLGYKGF 63
                57889********************88887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                 HHHHHHHHSTTEEHHHH CS
        MarR   7 viLrilyeqgplsvseL 23 
                 ++L++++e+++ + + +
  EHT99583.1 223 HCLYTVAEEQSTRSAAI 239
                 66666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2252.57
//
Query:       EHT99584.1  [L=51]
Description: YcfA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-20   71.5   0.8    4.5e-20   71.4   0.8    1.0  1  HicA_toxin  HicA toxin of bacterial toxin-antitoxin,


Domain annotation for each model (and alignments):
>> HicA_toxin  HicA toxin of bacterial toxin-antitoxin,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.8   2.5e-24   4.5e-20       8      58 .]       2      51 .]       1      51 [] 0.97

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2.5e-24
                HHHTT-EEEEEETTEEEEE-TTSS-EEEEE.S-SSS--CCCHHHHHHHCC- CS
  HicA_toxin  8 LeklGfevvrqkGSHvrfkhpdkrgivtvppHpgkelkpgtlksIlkqaGl 58
                +e++G+++vr kGSH++fkhp+k+g vtv+ Hp+k+++  tlksI kqaGl
  EHT99584.1  2 IEADGWYLVRVKGSHHQFKHPTKKGLVTVK-HPQKDIPLPTLKSIKKQAGL 51
                689***************************.*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 417.70
//
Query:       EHT99585.1  [L=136]
Description: hypothetical protein CKS_1496 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-46  157.4   0.0    1.8e-46  157.3   0.0    1.0  1  HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antit


Domain annotation for each model (and alignments):
>> HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.0     1e-50   1.8e-46       1     123 []       3     126 ..       3     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 1e-50
  HicB_lk_antitox   1 ypiaiekdedsaygvvvPdlpGcfsagdtleeaianakeaielhlegliedgeeipepssieellanpeyaggiwalvdvdlskldgkaeriNi 94 
                      yp+ai+k+++ ++gv vPd+pGcfs gd+ ++ai++ +eai++h+e l+edge++pe++s+e++la+p+yag++wal+dvd+++l+gkae+iN+
       EHT99585.1   3 YPVAIDKGDS-SFGVRVPDIPGCFSGGDNYQDAIESVREAIDAHIELLVEDGEAVPEATSVENWLADPDYAGVVWALIDVDVTRLMGKAEKINV 95 
                      9*****9875.8********************************************************************************** PP

  HicB_lk_antitox  95 tlpervlkriDaavkaage..sRSgflakaa 123
                      tlp+ +++riD++v+a++e  sRSgfl+++a
       EHT99585.1  96 TLPSLLIRRIDQFVAAHPEygSRSGFLSRVA 126
                      ******************767*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1068.44
//
Query:       EHT99586.1  [L=168]
Description: hypothetical protein CKS_1494 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-50  170.4   0.0      4e-50  170.2   0.0    1.0  1  DUF2612   Protein of unknown function (DUF2612)


Domain annotation for each model (and alignments):
>> DUF2612  Protein of unknown function (DUF2612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.0   2.3e-54     4e-50       1     159 [.       4     163 ..       4     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 2.3e-54
     DUF2612   1 ylqlilsqyankpklvalvealnqplsdaafiadfladvfdldtAegkgLDvwGrivgvsrvltvplskkyfgFdeaglgFdqgsfkrrsdsttgltsL 99 
                 y++ i+  +  ++k+v+++ ++++p++d a+ a +l+++f +d  +g +LD++G+++g+sr++++p++++yf+ d++g gFdqgs+krr+d+++g+t+L
  EHT99586.1   4 YTDYITPAHLTADKFVRHISLITRPFTDIATQAGQLNALFSIDHGNGPQLDAVGEWIGLSRYVKTPITGVYFALDTEGVGFDQGSWKRRFDADSGFTEL 102
                 7899*********************************************************************************************** PP

     DUF2612 100 ddetyRklirakilaniwdgtvpninailrslfad.ggrvfvlDngdmtmtvyvfefqpta 159
                 dd+tyR ++raki an+wdgt++++++i++ +++d + ++f++Dn++m+m+vy+++  +++
  EHT99586.1 103 DDDTYRSILRAKIRANHWDGTCEMLADIYQGVIPDeSVKIFFTDNQNMSMDVYLTGGVVPE 163
                 ***********************************99*****************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1307.19
//
Query:       EHT99587.1  [L=396]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-13   48.1   3.6    3.2e-12   46.2   3.6    1.9  1  Baseplate_J  Baseplate J-like protein
  ------ inclusion threshold ------
      0.028   14.7   0.3        0.1   12.9   0.1    2.0  2  Big_3_2      Bacterial Ig-like domain


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   3.6   3.6e-16   3.2e-12       4     252 ..      84     341 ..      81     343 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 3.6e-16
  Baseplate_J   4 yLdrlgelevgvtRkpAtkAsgtvtftgeagtvIpaGtrvstadglsfattedtitagqgsatvkvtaeeaGaagNvpagtsllldtaiagiqsvava 101
                   L   +++  g+ R++  ++   v  tg+ gtvI++G++    +g  + + ++++ +  gsatv+++++++G++  +p+ +s    t++ g qsv++ 
   EHT99587.1  84 ALSNNVAI-NGISRQASGYSNADVLLTGQVGTVIKNGRVRDK-NGNLWSLPSTVTLDTHGSATVTAVCTQTGQITALPGDISEIA-TPTRGWQSVTNP 178
                  56667778.5***************************98887.7777******************************99977776.********9999 PP

  Baseplate_J 102 ntkvssgGadiEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwngpGtVkvvilldngglPtaellakVqayi.........se 189
                  ++   + G  +E+d +lr R ++++  p++  +  d ++ a +  +gV+r   ++++ ++   + ++  + + + ++ ++++++++i         + 
   EHT99587.1 179 AAA--ATGRPVETDNQLRNRQKKSVALPSR--TVLDGIQGAVALlSGVVRQRGFENDTSETDKNGIPSHSIAMIVDGGDVNAIASAIalkktpgagT- 271
                  977..********************99999..5666555555555***********98666666666666667888888888888885544444440. PP

  Baseplate_J 190 gl..........rPvtaevtvlaptekavnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqi 252
                                +  +++ + p+ ++v++++ l+  +g++ + + +++++a++ay+  +   g+ ++l+++
   EHT99587.1 272 -FgdtsamvtdsYGMPRKISFSRPKDVRVSVEIDLTAFTGYT-TLTGDKIRSAVAAYINAQLI-GDNLYLTRL 341
                  .04444444443333358888999999999999965556676.44555999999999999766.888888776 PP

>> Big_3_2  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.1e-05       0.1      22      68 ..      74     121 ..      56     137 .. 0.85
   2 ?   -2.5   0.0      0.66   5.9e+03       8      36 ..     165     193 ..     159     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
     Big_3_2  22 avw.elglgaaskaalrlsGitddasGidsaklrvidsdgsvyssvnv 68 
                 ++  + + gaa  +++ ++Gi+ +asG ++a + ++ + g+v+++  v
  EHT99587.1  74 SYSpATSTGAALSNNVAINGISRQASGYSNADVLLTGQVGTVIKNGRV 121
                 4446778899999*****************************998776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.66
     Big_3_2   8 sattssgynmvtsgavwelglgaaskaal 36 
                 +at   g++ vt+ a ++ g+  + +++l
  EHT99587.1 165 IATPTRGWQSVTNPAAAATGRPVETDNQL 193
                 66778999999999988888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2808.14
//
Query:       EHT99588.1  [L=457]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-86  288.6   5.3    9.1e-86  287.8   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    1.2e-14   54.4   1.5    2.9e-14   53.2   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    9.5e-12   45.5   9.0    2.1e-11   44.4   9.0    1.7  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.013   15.3   6.4      0.022   14.6   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.017   15.5   4.4      0.072   13.4   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.017   14.3   1.7      0.035   13.3   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.029   12.9   6.8      0.048   12.2   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
      0.031   13.9   2.4      0.037   13.6   0.8    1.8  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.042   13.0   0.4      0.071   12.3   0.4    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.049   13.9   3.1      0.088   13.1   3.1    1.4  1  Troponin         Troponin
      0.082   12.6   2.7       0.28   10.9   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.11   12.4   0.7         18    5.3   0.0    3.1  3  UME              UME (NUC010) domain
       0.12   12.1  10.8       0.21   11.4  10.8    1.3  1  ERM              Ezrin/radixin/moesin family
       0.27   11.4   1.7       0.86    9.8   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
        0.3   11.2  10.9       0.54   10.3  10.9    1.4  1  DHR10            Designed helical repeat protein 10 domain
       0.36   10.9   5.3        2.9    8.0   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        0.9    8.7   3.1        1.4    8.1   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.1    7.9   7.8        4.9    6.7   7.8    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        2.6    8.4   6.9       0.49   10.8   3.1    1.7  1  HalX             HalX domain
        2.8    8.3   8.0        5.7    7.3   8.0    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        5.2    7.8   8.8         10    6.8   1.8    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.6     0.096        82     167     214 ..      34      82 ..      21     121 .. 0.49
   2 !  287.8   0.1   1.1e-88   9.1e-86       2     264 ..     187     455 ..     186     457 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.096
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHT99588.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 287.8 bits;  conditional E-value: 1.1e-88
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99588.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99588.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpv 264
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+  R  
    EHT99588.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENVRRSS 455
                   4479******************************************************************987765 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   1.5   3.4e-17   2.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99588.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   9.0   2.5e-14   2.1e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.5e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99588.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   6.4   2.5e-05     0.022     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99588.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   8.4e-05     0.072      22      56 ..      23      57 ..      10      71 .. 0.82
   2 ?    3.1   0.4      0.14   1.2e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.4e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99588.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99588.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.7   4.1e-05     0.035      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99588.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.8   5.6e-05     0.048     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99588.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   4.3e-05     0.037     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -0.8   0.0       1.1   9.2e+02     125     146 ..     351     384 ..     340     452 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.3e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99588.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99588.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6778888888888886666654444444444432 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   8.3e-05     0.071      24      76 ..      37      91 ..      32     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99588.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1    0.0001     0.088      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT99588.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00033      0.28     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.9   0.1      0.18   1.6e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99588.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99588.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.5   1.3e+03      26      54 ..      16      44 ..       8      70 .. 0.76
   2 ?    3.3   0.0     0.091        78      15      53 ..      64     102 ..      58     105 .. 0.79
   3 ?    5.3   0.0     0.021        18       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.5
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99588.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                78999999999999999999988877765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.091
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT99588.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.021
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99588.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.8   0.00024      0.21      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99588.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1     0.001      0.86      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.2   0.1       1.4   1.2e+03       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99588.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99588.1 167 ACCSCDHI 174
                  35555555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.9   0.00063      0.54      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00063
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99588.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0034       2.9      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.6   1.2     0.081        69      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0034
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99588.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.081
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99588.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.1    0.0017       1.4      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99588.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.8    0.0057       4.9      70     152 ..      13      97 ..       2     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0057
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99588.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98765 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.1   0.00057      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00057
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT99588.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.0    0.0067       5.7       9      83 ..      14      92 ..      10     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0067
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT99588.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                56777778888899999999*********************966655.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.8     0.012        10      22      53 ..      12      43 ..       9      65 .. 0.87
   2 ?    2.9   1.5       0.2   1.7e+02      34      57 ..      68      91 ..      49     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99588.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6678899******************9887665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99588.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      853  (0.0475766); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2946.77
//
Query:       EHT99589.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99589.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 823.04
//
Query:       EHT99590.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99590.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99590.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99590.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99590.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 893.29
//
Query:       EHT99591.1  [L=157]
Description: uncharacterized DUF494 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-58  194.9   3.6    7.5e-58  194.7   3.6    1.0  1  DUF494    Protein of unknown function (DUF494)


Domain annotation for each model (and alignments):
>> DUF494  Protein of unknown function (DUF494)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.7   3.6   4.2e-62   7.5e-58       1     152 []       1     157 []       1     157 [] 0.98

  Alignments for each domain:
  == domain 1  score: 194.7 bits;  conditional E-value: 4.2e-62
      DUF494   1 mfdvLvYLfenyi..eaeacpdedeLereLsaaGFeeeeIqkAldwleeLaaaaeeeeeaal..asssslRiyteeEqekLdaeargfllfLeqagvld 95 
                 mfdvL+YLfe+yi  e+e+ +d+d+L+++L++aGF++e+I++Al+wle+La+ +e   ++ l  +++ s+Riyt+eE+++Ldae+rgfllfLeq++vl+
  EHT99591.1   1 MFDVLMYLFETYIhnETEMGVDQDRLTDDLTDAGFHREDIYNALNWLEKLADYQEGLVAPILlaNDPLSMRIYTDEESKRLDAESRGFLLFLEQIQVLS 99 
                 9************9889999************************************999987889999******************************* PP

      DUF494  96 aetrElvidramaldeeelsledlkwvvlmvlwnq.geekaalileellldeeerllh 152
                  etrE+vi+r+mald+ +++ledlkwvvlmvl+n  g e+a++++eell+d +e++lh
  EHT99591.1 100 LETREMVIERVMALDTLDFDLEDLKWVVLMVLFNIpGCENAYQQMEELLFDVNEGMLH 157
                 ******************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1298.08
//
Query:       EHT99592.1  [L=181]
Description: Zn-finger domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-48  160.6  19.6    2.2e-15   56.2   0.6    4.2  4  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
     0.0001   21.6  12.1        1.3    8.6   0.2    5.4  5  zf-ribbon_3      zinc-ribbon domain
    0.00022   21.1   0.9       0.49   10.4   0.0    4.1  3  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
    0.00026   20.7  18.3      0.083   12.6   0.3    4.5  4  Zn_Tnp_IS1       InsA N-terminal domain
    0.00056   20.0  15.4        1.8    8.7   1.2    4.6  4  Zn-ribbon_8      Zinc ribbon domain
  ------ inclusion threshold ------
      0.011   15.8   9.1        5.1    7.3   0.1    4.4  4  DUF1272          Protein of unknown function (DUF1272)
      0.014   14.7  10.6        3.1    7.2   0.2    4.4  4  zf-TFIIB         Transcription factor zinc-finger
      0.018   15.7  11.4        3.7    8.3   0.2    4.5  4  zf-ISL3          zinc-finger of transposase IS204/IS1001/IS10
      0.023   14.4  13.9        1.7    8.5   0.1    5.1  5  zinc_ribbon_2    zinc-ribbon domain
      0.026   14.3  11.6        5.2    6.9   0.8    4.4  4  YacG             DNA gyrase inhibitor YacG
      0.045   14.0  11.5       0.13   12.5   3.4    3.3  3  zf-LITAF-like    LITAF-like zinc ribbon domain
      0.057   13.7  12.5        6.4    7.1   0.4    4.8  4  zinc_ribbon_9    zinc-ribbon
       0.16   12.2  12.0          1    9.6   0.6    4.3  4  Auto_anti-p27    Sjogren's syndrome/scleroderma autoantigen 1
       0.36   10.9  20.2    1.8e+04   -5.1  20.2    4.1  0  DZR              Double zinc ribbon
       0.37   10.7   0.2       0.37   10.7   0.2    4.1  5  RNA_POL_M_15KD   RNA polymerases M/15 Kd subunit
       0.49   10.3   9.0        3.2    7.7   0.0    4.4  4  DUF3797          Domain of unknown function (DUF3797)
       0.55   10.7   2.8         26    5.3   0.0    3.5  4  DUF983           Protein of unknown function (DUF983)
        0.6    9.7   7.8         15    5.2   0.0    4.0  4  TF_Zn_Ribbon     TFIIB zinc-binding
        0.7    9.9  11.6         30    4.7   0.3    4.9  4  zinc_ribbon_4    zinc-ribbon domain
          1    9.8  22.8        1.3    9.5   0.6    4.1  4  Lar_restr_allev  Restriction alleviation protein Lar
        1.5    8.9  12.7          3    7.9   0.1    4.4  4  Rubredoxin       Rubredoxin
        1.6    8.8  21.0        2.5    8.1   0.2    5.0  4  Ogr_Delta        Ogr/Delta-like zinc finger
        4.8    7.2  22.6        1.6    8.8   0.5    4.6  4  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
        4.9    7.2  16.4        7.7    6.6   0.1    4.7  5  ADK_lid          Adenylate kinase, active site lid
        5.7    7.0  15.7         18    5.4   1.0    3.8  3  HypA             Hydrogenase/urease nickel incorporation, met
          6    6.6  21.4        2.3    7.9   0.1    5.1  4  zf-NADH-PPase    NADH pyrophosphatase zinc ribbon domain
        6.5    6.5  14.7        3.5    7.4   0.1    4.0  4  zf-RRN7          Zinc-finger of RNA-polymerase I-specific TFI
        8.1    6.3  16.8        2.9    7.8   0.6    4.5  4  PADR1            PADR1 (NUC008) domain
        9.1    6.4   8.2        4.5    7.4   0.1    3.4  4  Ribosomal_L37ae  Ribosomal L37ae protein family
        9.5    6.4   7.8         44    4.2   1.8    3.4  3  DUF2752          Protein of unknown function (DUF2752)


Domain annotation for each model (and alignments):
>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.9   1.8e-17   1.1e-14       4      36 ..      15      47 ..      12      50 .. 0.93
   2 !   56.2   0.6   3.6e-18   2.2e-15       3      38 ..      63      98 ..      61      99 .. 0.94
   3 !   52.4   0.7   5.4e-17   3.2e-14       2      37 ..     104     141 ..     103     143 .. 0.94
   4 !   10.4   0.2   0.00072      0.43       2      21 ..     145     167 ..     144     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 1.8e-17
                    -SSS--EEEEEE-SSSEEEEESST.T----EEB CS
  zf-C4_Topoisom  4 CPkCggdLvlkrgkkGkFvGCsnYPeCkftkkl 36
                    CP+Cg++Lv+++gk G F+GC nYP C+++k+l
      EHT99592.1 15 CPACGAELVIRSGKHGPFLGCANYPACDYIKPL 47
                    ******************************998 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 3.6e-18
                    E-SSS--EEEEEE-SSSEEEEESST.T----EEB-G CS
  zf-C4_Topoisom  3 kCPkCggdLvlkrgkkGkFvGCsnYPeCkftkklkk 38
                     CP+Cg+d vl++g++G+F+GCs YP C++t+ ++k
      EHT99592.1 63 VCPQCGADKVLRQGRFGMFIGCSDYPACDYTETIDK 98
                    7******************************99876 PP

  == domain 3  score: 52.4 bits;  conditional E-value: 5.4e-17
                     EE-SSS-.-EEEEEE-SSS.EEEEESST.T----EEB- CS
  zf-C4_Topoisom   2 ekCPkCg.gdLvlkrgkkG.kFvGCsnYPeCkftkklk 37 
                     ++CP+C  g+Lv++r+++G +F++C +YP C+f+++l 
      EHT99592.1 104 IDCPQCQqGKLVQRRSRFGkTFHACERYPACQFAVNLT 141
                     58********************************9986 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00072
                     EE-SSS-.-EEEEEE-SSS..EE CS
  zf-C4_Topoisom   2 ekCPkCg.gdLvlkrgkkG..kF 21 
                     + CP C    Lv+k++ +G   F
      EHT99592.1 145 GRCPHCEfPLLVEKKTAQGirLF 167
                     67****************96555 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2    0.0021       1.3       5      11 ..      15      22 ..      12      28 .. 0.75
   2 !    8.2   0.1    0.0027       1.6       5      11 ..      64      71 ..      61      75 .. 0.80
   3 ?    3.9   0.0     0.065        39       2       9 ..     103     110 ..     102     121 .. 0.74
   4 ?    4.8   0.1     0.032        19      19      26 .]     147     154 ..     139     154 .. 0.82
   5 ?   -0.4   0.0       1.4   8.4e+02       7      14 ..     172     180 ..     172     181 .] 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0021
  zf-ribbon_3  5 CPnCGa.p 11
                 CP+CGa +
   EHT99592.1 15 CPACGAeL 22
                 99999977 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0027
  zf-ribbon_3  5 CPnCGa.p 11
                 CP+CGa +
   EHT99592.1 64 CPQCGAdK 71
                 99999866 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.065
  zf-ribbon_3   2 tvrCPnCG 9  
                  t+ CP+C 
   EHT99592.1 103 TIDCPQCQ 110
                  5779*994 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.032
  zf-ribbon_3  19 CpyCGtkl 26 
                  Cp+C  +l
   EHT99592.1 147 CPHCEFPL 154
                  88887765 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.4
  zf-ribbon_3   7 nCGa.plss 14 
                  +CG+ ++++
   EHT99592.1 172 SCGKaIIQE 180
                  699988875 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.095        57       4      11 ..      14      21 ..      14      37 .. 0.81
   2 !   10.4   0.0   0.00083      0.49       5      26 ..      64     110 ..      63     111 .. 0.91
   3 ?    2.2   0.1       0.3   1.8e+02       4       8 ..     146     150 ..     140     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.095
  PhnA_Zn_Ribbon  4 kCplCaSe 11
                    +Cp C++e
      EHT99592.1 14 PCPACGAE 21
                    59999988 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00083
  PhnA_Zn_Ribbon   5 CplCaSeytY.........................edgallvCpeCa 26 
                     Cp+C+++ ++                          d +   Cp C 
      EHT99592.1  64 CPQCGADKVLrqgrfgmfigcsdypacdytetidkPDETTIDCPQCQ 110
                     **********9999999999999999999999999999999999995 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.3
  PhnA_Zn_Ribbon   4 kCplC 8  
                      Cp+C
      EHT99592.1 146 RCPHC 150
                     67777 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2    0.0024       1.4       8      21 ..      15      28 ..      14      31 .. 0.93
   2 !   12.6   0.3   0.00014     0.083       8      21 ..      64      77 ..      62      79 .. 0.94
   3 !    9.0   1.1    0.0019       1.1       5      29 ..     103     131 ..     101     135 .. 0.69
   4 ?    0.2   0.5       1.1   6.5e+02       7      11 ..     146     150 ..     142     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0024
  Zn_Tnp_IS1  8 CPrCsstdVyRhGk 21
                CP C ++ V+R Gk
  EHT99592.1 15 CPACGAELVIRSGK 28
                *************9 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00014
  Zn_Tnp_IS1  8 CPrCsstdVyRhGk 21
                CP+C ++ V R+G+
  EHT99592.1 64 CPQCGADKVLRQGR 77
                *************8 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0019
  Zn_Tnp_IS1   5 sihCPrCsstd.VyRh...GkstagHeRf 29 
                 +i CP+C+    V R    Gk     eR+
  EHT99592.1 103 TIDCPQCQQGKlVQRRsrfGKTFHACERY 131
                 89******999787642225555555555 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.1
  Zn_Tnp_IS1   7 hCPrC 11 
                  CP C
  EHT99592.1 146 RCPHC 150
                 58887 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0053       3.1      26      36 ..      12      22 ..       4      25 .. 0.72
   2 !    8.7   0.1    0.0031       1.9      27      38 ..      62      74 ..      50      75 .. 0.76
   3 !    8.7   1.2    0.0031       1.8      11      37 ..      90     115 ..      84     118 .. 0.65
   4 ?    2.0   0.8      0.39   2.3e+02      28      33 ..     146     151 ..     127     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0053
  Zn-ribbon_8 26 ltaCPeCgsev 36
                 + +CP+Cg+e+
   EHT99592.1 12 QDPCPACGAEL 22
                 445*****965 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0031
  Zn-ribbon_8 27 taCPeCgs.evrr 38
                  +CP+Cg+ +v r
   EHT99592.1 62 HVCPQCGAdKVLR 74
                 45******88877 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0031
  Zn-ribbon_8  11 CghefevlqsisdapltaCPeCgs.evr 37 
                  C+   e + +  d+  ++CP+C++ ++ 
   EHT99592.1  90 CD-YTETIDKP-DETTIDCPQCQQgKLV 115
                  55.55555543.444566****998654 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.39
  Zn-ribbon_8  28 aCPeCg 33 
                   CP+C 
   EHT99592.1 146 RCPHCE 151
                  4****5 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0086       5.1      41      54 ..      12      25 ..       7      28 .. 0.85
   2 ?    5.4   0.1     0.033        20      41      54 ..      61      74 ..      54      77 .. 0.76
   3 ?    4.1   0.1     0.082        49      43      56 ..     105     119 ..      89     120 .. 0.80
   4 ?    2.2   0.4      0.33     2e+02       7      22 ..     146     161 ..     133     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0086
     DUF1272 41 envCPncgGelvkR 54
                ++ CP cg elv R
  EHT99592.1 12 QDPCPACGAELVIR 25
                578*********98 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.033
     DUF1272 41 envCPncgGelvkR 54
                 +vCP+cg + v R
  EHT99592.1 61 GHVCPQCGADKVLR 74
                589*****987766 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.082
     DUF1272  43 vCPncg.GelvkRPi 56 
                  CP+c  G+lv+R  
  EHT99592.1 105 DCPQCQqGKLVQRRS 119
                 6****5599*99965 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.33
     DUF1272   7 nCecCdkdlppdseea 22 
                 +C +C+  l  ++++a
  EHT99592.1 146 RCPHCEFPLLVEKKTA 161
                 5777777777766666 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0052       3.1       2      12 ..      15      25 ..      14      37 .. 0.78
   2 ?    4.3   0.1     0.043        26      18      26 ..      60      68 ..      56      74 .. 0.86
   3 ?    6.1   0.4     0.011       6.7       1      22 [.     105     128 ..     105     130 .. 0.66
   4 ?    1.0   0.1      0.44   2.6e+02      22      26 ..     147     151 ..     144     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0052
    zf-TFIIB  2 CPkCqdelees 12
                CP+C++el++ 
  EHT99592.1 15 CPACGAELVIR 25
                ********975 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.043
    zf-TFIIB 18 eidyCpqCr 26
                e ++CpqC+
  EHT99592.1 60 EGHVCPQCG 68
                668999997 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.011
    zf-TFIIB   1 kCPkCqd.eleeser.ggveidyC 22 
                 +CP Cq+  l++ ++  g +++ C
  EHT99592.1 105 DCPQCQQgKLVQRRSrFGKTFHAC 128
                 5****9989997665423355555 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.44
    zf-TFIIB  22 CpqCr 26 
                 Cp+C+
  EHT99592.1 147 CPHCE 151
                 55553 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2      0.11        66       4      17 ..      14      27 ..      11      31 .. 0.73
   2 ?    8.3   0.2    0.0062       3.7       3      14 ..      62      73 ..      60      78 .. 0.78
   3 ?    4.1   0.2      0.13        76       4      15 ..     105     116 ..     102     124 .. 0.77
   4 ?    4.2   0.1      0.12        69       3       9 ..     145     151 ..     144     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.11
     zf-ISL3  4 rCPnCgsktvvkhg 17
                 CP Cg+  v + g
  EHT99592.1 14 PCPACGAELVIRSG 27
                6*****98655544 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0062
     zf-ISL3  3 hrCPnCgsktvv 14
                h+CP+Cg+ +v 
  EHT99592.1 62 HVCPQCGADKVL 73
                89*****99764 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.13
     zf-ISL3   4 rCPnCgsktvvk 15 
                  CP+C++ ++v 
  EHT99592.1 105 DCPQCQQGKLVQ 116
                 6*****987655 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.12
     zf-ISL3   3 hrCPnCg 9  
                  rCP+C 
  EHT99592.1 145 GRCPHCE 151
                 69****7 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0029       1.7      16      23 .]      15      22 ..      11      23 .. 0.71
   2 ?    6.7   0.2      0.01       6.1      16      21 ..      64      69 ..      62      71 .. 0.60
   3 ?    1.4   0.1      0.46   2.7e+02      16      19 ..     106     109 ..      96     113 .. 0.73
   4 ?    3.2   0.3      0.13        79       1       5 [.     146     150 ..     146     155 .. 0.77
   5 ?   -0.4   0.0       1.7     1e+03       4       9 ..     172     177 ..     171     181 .] 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0029
  zinc_ribbon_2 16 CpyCGtpl 23
                   Cp CG++l
     EHT99592.1 15 CPACGAEL 22
                   77777765 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.01
  zinc_ribbon_2 16 CpyCGt 21
                   Cp+CG+
     EHT99592.1 64 CPQCGA 69
                   555554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.46
  zinc_ribbon_2  16 CpyC 19 
                    Cp+C
     EHT99592.1 106 CPQC 109
                    7777 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.13
  zinc_ribbon_2   1 fCpnC 5  
                    +Cp+C
     EHT99592.1 146 RCPHC 150
                    59999 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 1.7
  zinc_ribbon_2   4 nCGael 9  
                    +CG+ +
     EHT99592.1 172 SCGKAI 177
                    799976 PP

>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.051        30       3      21 ..      15      32 ..      14      38 .. 0.81
   2 ?    3.0   0.1      0.15        87       3      12 ..      64      73 ..      62      85 .. 0.82
   3 ?    4.7   0.0     0.041        24       1      16 [.     104     119 ..     104     122 .. 0.74
   4 ?    6.9   0.8    0.0087       5.2       2      25 ..     146     171 ..     145     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.051
        YacG  3 CPtCkkevewseenpfrPF 21
                CP C++e ++++  ++ PF
  EHT99592.1 15 CPACGAELVIRS-GKHGPF 32
                ******999887.666777 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
        YacG  3 CPtCkkevew 12
                CP+C+++ + 
  EHT99592.1 64 CPQCGADKVL 73
                ****987665 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.041
        YacG   1 vkCPtCkkevewseen 16 
                 ++CP+C++   ++ ++
  EHT99592.1 104 IDCPQCQQGKLVQRRS 119
                 58*****977766655 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0087
        YacG   2 kCPtCkke..vewseenpfrPFCSeR 25 
                 +CP+C+ +  ve ++++  r FC ++
  EHT99592.1 146 RCPHCEFPllVEKKTAQGIRLFCASK 171
                 7*****9833455557889****543 PP

>> zf-LITAF-like  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.44   2.6e+02      59      67 ..      15      23 ..       9      26 .. 0.75
   2 ?    3.2   0.2      0.18   1.1e+02      57      64 ..      62      69 ..      60      72 .. 0.83
   3 ?   12.5   3.4   0.00022      0.13       4      66 ..     102     177 ..      99     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.44
  zf-LITAF-like 59 CpnCgallg 67
                   Cp Cga l 
     EHT99592.1 15 CPACGAELV 23
                   888888775 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.18
  zf-LITAF-like 57 hyCpnCga 64
                   h Cp+Cga
     EHT99592.1 62 HVCPQCGA 69
                   88999986 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00022
  zf-LITAF-like   4 tqvdCpaCqqrvvTsveyksgkltwll.....a.lllclfgc...llccliPfcv..dslkdvehyC..pnCgall 66 
                    t++dCp+Cqq    + +++ gk+ + +     + +++ l+ +   +  c +P++v  ++ + ++ +C  ++Cg+ +
     EHT99592.1 102 TTIDCPQCQQGKLVQRRSRFGKTFHACerypaCqFAVNLTPVagrCPHCEFPLLVekKTAQGIRLFCasKSCGKAI 177
                    789**********************88776655444444444888899999***9888899999999766788876 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.097        58      20      29 ..      12      20 ..       7      23 .. 0.79
   2 ?    4.6   0.1     0.066        39      22      29 ..      63      69 ..      46      72 .. 0.81
   3 ?    7.1   0.4     0.011       6.4      14      30 ..      96     112 ..      89     116 .. 0.66
   4 ?    3.2   0.5      0.18   1.1e+02      23      28 ..     146     151 ..     132     155 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.097
  zinc_ribbon_9 20 sdvlCPhCgg 29
                   +d+ CP Cg 
     EHT99592.1 12 QDP-CPACGA 20
                   689.****96 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.066
  zinc_ribbon_9 22 vlCPhCgg 29
                   v CP+Cg 
     EHT99592.1 63 V-CPQCGA 69
                   5.****96 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.011
  zinc_ribbon_9  14 vspdedsdvlCPhCggg 30 
                    +  +++  + CP+C++g
     EHT99592.1  96 IDKPDETTIDCPQCQQG 112
                    4444444456****987 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.18
  zinc_ribbon_9  23 lCPhCg 28 
                     CPhC+
     EHT99592.1 146 RCPHCE 151
                    4****6 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.19   1.2e+02      16      25 ..      13      22 ..       9      30 .. 0.79
   2 ?    2.9   0.1       0.2   1.2e+02      15      22 ..      61      68 ..      58      76 .. 0.80
   3 ?    1.8   0.4      0.47   2.8e+02      18      27 ..     106     116 ..      88     128 .. 0.73
   4 ?    9.6   0.6    0.0017         1      17      37 ..     146     169 ..     143     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.19
  Auto_anti-p27 16 etCpvCgvPL 25
                   + Cp Cg+ L
     EHT99592.1 13 DPCPACGAEL 22
                   6899998755 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
  Auto_anti-p27 15 aetCpvCg 22
                   + +Cp+Cg
     EHT99592.1 61 GHVCPQCG 68
                   56799997 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.47
  Auto_anti-p27  18 CpvC.gvPLmr 27 
                    Cp+C +  L++
     EHT99592.1 106 CPQCqQGKLVQ 116
                    77776555555 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0017
  Auto_anti-p27  17 tCpvCgvPLmrdr...kggkvyCv 37 
                     Cp C  PL+ ++   +g +++C+
     EHT99592.1 146 RCPHCEFPLLVEKktaQGIRLFCA 169
                    5********999988778889997 PP

>> DZR  Double zinc ribbon
   [No individual domains that satisfy reporting thresholds (although complete target did)]

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00061      0.37       4      33 ..      15      47 ..      15      50 .. 0.91
   2 ?    0.6   0.1      0.87   5.2e+02       4       8 ..      64      68 ..      60      71 .. 0.67
   3 ?   -1.6   0.0       4.3   2.6e+03      27      34 ..      90      97 ..      88      99 .. 0.79
   4 ?    1.3   0.4      0.54   3.2e+02      18      28 ..     101     110 ..      94     112 .. 0.72
   5 ?   -1.8   0.5       4.8   2.9e+03       4       8 ..     147     151 ..     147     174 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00061
                    ESTTTSBEEEEECSCCCEEEESS...SS-EEES CS
  RNA_POL_M_15KD  4 CpkCgNlLlpkedkegknfeCrq...CgYeepa 33
                    Cp Cg  L ++++k g  + C++   C+Y++p 
      EHT99592.1 15 CPACGAELVIRSGKHGPFLGCANypaCDYIKPL 47
                    ****************99***97777*****96 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.87
                    ESTTT CS
  RNA_POL_M_15KD  4 CpkCg 8 
                    Cp Cg
      EHT99592.1 64 CPQCG 68
                    56665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.3
                    SS-EEESS CS
  RNA_POL_M_15KD 27 CgYeepad 34
                    C+Y e +d
      EHT99592.1 90 CDYTETID 97
                    9**99777 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.54
                     CCCEEEESSSS CS
  RNA_POL_M_15KD  18 egknfeCrqCg 28 
                     e++  +C qC+
      EHT99592.1 101 ETT-IDCPQCQ 110
                     333.6999997 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 4.8
                     ESTTT CS
  RNA_POL_M_15KD   4 CpkCg 8  
                     Cp C 
      EHT99592.1 147 CPHCE 151
                     77775 PP

>> DUF3797  Domain of unknown function (DUF3797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.24   1.4e+02      16      27 ..      15      26 ..      10      29 .. 0.80
   2 ?    7.7   0.0    0.0053       3.2      15      26 ..      63      74 ..      54      77 .. 0.87
   3 ?    2.5   0.0      0.23   1.4e+02      13      23 ..     103     113 ..      94     119 .. 0.78
   4 ?   -1.6   1.1       4.4   2.7e+03      15      19 ..     146     150 ..     134     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.24
     DUF3797 16 CPeCgNnkvlNs 27
                CP Cg + v  s
  EHT99592.1 15 CPACGAELVIRS 26
                *****9877655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0053
     DUF3797 15 qCPeCgNnkvlN 26
                 CP+Cg +kvl 
  EHT99592.1 63 VCPQCGADKVLR 74
                5*********85 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.23
     DUF3797  13 YvqCPeCgNnk 23 
                  + CP+C+  k
  EHT99592.1 103 TIDCPQCQQGK 113
                 578****8765 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.4
     DUF3797  15 qCPeC 19 
                  CP C
  EHT99592.1 146 RCPHC 150
                 6**** PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.044        26       8      27 ..      12      31 ..       7      34 .. 0.83
   2 ?    0.6   0.1       1.3   7.6e+02      10      17 ..      63      70 ..      60      81 .. 0.85
   3 ?   -1.8   0.0       7.3   4.4e+03      10      16 ..     105     111 ..     102     125 .. 0.80
   4 ?    2.2   0.0      0.41   2.5e+02       7      18 ..     143     154 ..     139     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.044
      DUF983  8 adaCeaCgldlsharaddgP 27
                +d C+aCg++l       gP
  EHT99592.1 12 QDPCPACGAELVIRSGKHGP 31
                678*******9988887777 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.3
      DUF983 10 aCeaCgld 17
                 C++Cg+d
  EHT99592.1 63 VCPQCGAD 70
                5*****98 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 7.3
      DUF983  10 aCeaCgl 16 
                  C++C++
  EHT99592.1 105 DCPQCQQ 111
                 69***87 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.41
      DUF983   7 vadaCeaCgldl 18 
                 va +C++C+  l
  EHT99592.1 143 VAGRCPHCEFPL 154
                 7889****9876 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.045        27      22      37 ..      15      30 ..      14      31 .. 0.70
   2 ?    5.2   0.0     0.024        15       2      10 ..      63      71 ..      62      80 .. 0.76
   3 ?    1.1   0.2      0.46   2.8e+02       5      25 ..      89     109 ..      88     119 .. 0.67
   4 ?    0.2   0.1      0.89   5.3e+02       2       7 ..     146     151 ..     145     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.045
                  ESSSSBEEEECCCCCC CS
  TF_Zn_Ribbon 22 CtdCGlVlednsideg 37
                  C++CG+ l  +s ++g
    EHT99592.1 15 CPACGAELVIRSGKHG 30
                  8888877777777766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.024
                  EETTTTCEE CS
  TF_Zn_Ribbon  2 kCPnCgstn 10
                  +CP Cg ++
    EHT99592.1 63 VCPQCGADK 71
                  688888765 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.46
                   TTTCEECHEETSTTCEEESSS CS
  TF_Zn_Ribbon   5 nCgstnlveDpergelvCtdC 25 
                    C  t+++  p+++++ C+ C
    EHT99592.1  89 ACDYTETIDKPDETTIDCPQC 109
                   566666666677777777777 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.89
                   EETTTT CS
  TF_Zn_Ribbon   2 kCPnCg 7  
                   +CP C 
    EHT99592.1 146 RCPHCE 151
                   699996 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.15        88       5      15 ..      15      25 ..      14      31 .. 0.76
   2 ?    2.9   0.1      0.18   1.1e+02       5      10 ..      64      69 ..      63      74 .. 0.86
   3 ?    4.7   0.3      0.05        30       3       9 ..     104     110 ..      98     112 .. 0.76
   4 ?    3.4   0.2      0.12        71       4      10 ..     146     152 ..     145     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.15
  zinc_ribbon_4  5 CpsCkakyeid 15
                   Cp+C+a+  i+
     EHT99592.1 15 CPACGAELVIR 25
                   99999876665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
  zinc_ribbon_4  5 CpsCka 10
                   Cp+C+a
     EHT99592.1 64 CPQCGA 69
                   999987 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.05
  zinc_ribbon_4   3 itCpsCk 9  
                    i Cp+C+
     EHT99592.1 104 IDCPQCQ 110
                    6788887 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.12
  zinc_ribbon_4   4 tCpsCka 10 
                    +Cp+C++
     EHT99592.1 146 RCPHCEF 152
                    6888876 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.6    0.0021       1.3       4      36 ..      13      43 ..      10      56 .. 0.74
   2 ?    7.4   0.6    0.0096       5.7       5      36 ..      63      92 ..      60     104 .. 0.76
   3 ?    4.2   1.1     0.097        58       5      34 ..     105     134 ..     101     145 .. 0.77
   4 ?    3.5   1.1      0.16        96       5      35 ..     146     174 ..     142     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0021
  Lar_restr_allev  4 kpCPfCggravlersqrvvaeigqcvyCad...Cga 36
                      pCP Cg + v+   + ++     +  Ca+   C +
       EHT99592.1 13 DPCPACGAELVIRSGKHGP-----FLGCANypaCDY 43
                     6******987776666655.....788887777877 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0096
  Lar_restr_allev  5 pCPfCggravlersqrvvaeigqcvyCad...Cga 36
                      CP Cg ++vl +   +      ++ C d   C +
       EHT99592.1 63 VCPQCGADKVLRQGRFGM-----FIGCSDypaCDY 92
                     5*******9998887776.....799988888888 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.097
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigqcvyCad...C 34 
                      +CP C + + ++r+ r  +    + +C+    C
       EHT99592.1 105 DCPQCQQGKLVQRRSRFGKT---FHACERypaC 134
                      7***********99998885...6666555556 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.16
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigqcvyCad..Cg 35 
                       CP+C  +  +e+ +          +Ca   Cg
       EHT99592.1 146 RCPHCEFPLLVEKKTAQGI----RLFCASksCG 174
                      5****98888888766665....7778666687 PP

>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3      0.34     2e+02      37      43 ..      15      21 ..       9      23 .. 0.88
   2 ?    7.9   0.1     0.005         3      35      44 ..      62      71 ..      57      73 .. 0.86
   3 ?    3.1   0.4      0.16        99      36      44 ..     105     113 ..      88     115 .. 0.82
   4 ?    1.4   0.1      0.55   3.3e+02      36      42 ..     146     152 ..     140     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.34
                BTTTB-B CS
  Rubredoxin 37 CPdCgve 43
                CP Cg+e
  EHT99592.1 15 CPACGAE 21
                ****986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.005
                -BBTTTB-BG CS
  Rubredoxin 35 WvCPdCgvek 44
                 vCP+Cg++k
  EHT99592.1 62 HVCPQCGADK 71
                68******99 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.16
                 BBTTTB-BG CS
  Rubredoxin  36 vCPdCgvek 44 
                  CP+C+ +k
  EHT99592.1 105 DCPQCQQGK 113
                 6****9877 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.55
                 BBTTTB- CS
  Rubredoxin  36 vCPdCgv 42 
                 +CP+C+ 
  EHT99592.1 146 RCPHCEF 152
                 7999975 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2    0.0042       2.5       2      13 ..      15      26 ..      14      28 .. 0.91
   2 ?    5.7   0.1     0.025        15       2      10 ..      64      72 ..      63      77 .. 0.79
   3 ?    0.8   3.5      0.85   5.1e+02       2      28 ..     106     134 ..     105     137 .. 0.55
   4 ?    4.9   0.1     0.044        26       1       8 [.     146     153 ..     146     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0042
   Ogr_Delta  2 CPhCgapaaart 13
                CP Cga+ ++r+
  EHT99592.1 15 CPACGAELVIRS 26
                **********97 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
   Ogr_Delta  2 CPhCgapaa 10
                CP+Cga  +
  EHT99592.1 64 CPQCGADKV 72
                *****9765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.85
   Ogr_Delta   2 CPhCga.paaa.rtsrnlskdvreryyqC 28 
                 CP+C++ + +  r++  ++ +  ery  C
  EHT99592.1 106 CPQCQQgKLVQrRSRFGKTFHACERYPAC 134
                 ****8623333033335555555566666 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.044
   Ogr_Delta   1 rCPhCgap 8  
                 rCPhC+ p
  EHT99592.1 146 RCPHCEFP 153
                 7****866 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.5     0.057        34      21      30 ..      15      25 ..       4      43 .. 0.74
   2 ?    8.8   0.5    0.0027       1.6      17      31 ..      60      74 ..      59      94 .. 0.80
   3 ?    3.0   1.8      0.17     1e+02      20      43 ..     105     134 ..      99     137 .. 0.66
   4 ?    4.5   0.9     0.059        35      20      26 ..     146     152 ..     141     176 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.057
  Zn_Tnp_IS1595 21 CPhCgsr.kay 30
                   CP+Cg +  ++
     EHT99592.1 15 CPACGAElVIR 25
                   *****885444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0027
  Zn_Tnp_IS1595 17 ngfvCPhCgsrkayr 31
                   +g+vCP Cg +k+ r
     EHT99592.1 60 EGHVCPQCGADKVLR 74
                   589******987765 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.17
  Zn_Tnp_IS1595  20 vCPhCgsrkayrikt...rglfqCke...C 43 
                     CP C+  k+ + ++      + C++   C
     EHT99592.1 105 DCPQCQQGKLVQRRSrfgKTFHACERypaC 134
                    5*****877766665455556666665555 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.059
  Zn_Tnp_IS1595  20 vCPhCgs 26 
                    +CPhC+ 
     EHT99592.1 146 RCPHCEF 152
                    6****85 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.013       7.7      24      35 ..      15      26 ..       9      26 .. 0.87
   2 ?    3.2   0.1      0.15        88       3       9 ..      63      69 ..      60      74 .. 0.88
   3 ?    2.1   0.8      0.34     2e+02      24      34 ..     106     117 ..      90     118 .. 0.76
   4 ?    4.1   0.1     0.075        45       8      31 ..     122     154 ..     122     157 .. 0.74
   5 ?   -1.9   0.1       5.8   3.5e+03       5       9 ..     171     175 ..     165     179 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                -TTT--.-B--G CS
     ADK_lid 24 CDkCGepLvqRs 35
                C  CG +Lv Rs
  EHT99592.1 15 CPACGAELVIRS 26
                99********97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                E-TTT-- CS
     ADK_lid  3 vCpkCGr 9 
                vCp+CG+
  EHT99592.1 63 VCPQCGA 69
                8999996 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.34
                 -TTT--..-B-- CS
     ADK_lid  24 CDkCGe.pLvqR 34 
                 C  C   +LvqR
  EHT99592.1 106 CPQCQQgKLVQR 117
                 68888779***9 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.075
                 --EEETT.......T..B--SSTTB-TTT--.- CS
     ADK_lid   8 GrsYhvv.......f..npPkveglCDkCGepL 31 
                 G+++h         f  n   v g C  C  pL
  EHT99592.1 122 GKTFHACerypacqFavNLTPVAGRCPHCEFPL 154
                 778896677777763457777********9887 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 5.8
                 TTT-- CS
     ADK_lid   5 pkCGr 9  
                 ++CG+
  EHT99592.1 171 KSCGK 175
                 44654 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.0      0.03        18      73      97 ..      15      72 ..       8      82 .. 0.68
   2 ?    4.0   0.8     0.082        49      76      96 ..      90     113 ..      79     121 .. 0.73
   3 ?    4.7   1.1     0.049        29      60      93 ..     134     174 ..     123     180 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.03
                ETTTS-EEECHH.HHH.................................S-TTTSSS-E CS
        HypA 73 CreCgkefelee.kal.................................rCpkCgsadv 97
                C  Cg+e  +++ k                                    Cp+Cg+ +v
  EHT99592.1 15 CPACGAELVIRSgK-HgpflgcanypacdyikplgnqadghvvkvleghVCPQCGADKV 72
                77777777655422.23556677777777777777777777777788889999999775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.082
                 TS-EEECHH.H..HHS-TTTSSS- CS
        HypA  76 Cgkefelee.k..alrCpkCgsad 96 
                 C+++ ++++ +  ++ Cp+C++ +
  EHT99592.1  90 CDYTETIDKpDetTIDCPQCQQGK 113
                 7766666654335779****9865 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.049
                 -EEEEEEE--EEEETTTS-EEECHHH.HH......S-TTTS CS
        HypA  60 aeLeieevpvkvrCreCgkefeleek.al......rCpkCg 93 
                 ++++++ +pv  rC +C+    +e+k a         ++Cg
  EHT99592.1 134 CQFAVNLTPVAGRCPHCEFPLLVEKKtAQgirlfcASKSCG 174
                 57888889999999999866655543222344444444555 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.7     0.022        13       6      18 ..      15      27 ..      15      44 .. 0.79
   2 ?    5.6   0.3     0.021        13      23      29 ..      63      69 ..      61      75 .. 0.82
   3 ?    7.9   0.1    0.0039       2.3      11      28 ..      93     110 ..      93     111 .. 0.90
   4 ?    0.1   0.7       1.1   6.5e+02      23      27 ..     146     150 ..     144     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
  zf-NADH-PPase  6 CgrCGaptepaeg 18
                   C+ CGa+ +  +g
     EHT99592.1 15 CPACGAELVIRSG 27
                   8888887776655 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.021
  zf-NADH-PPase 23 vCpaCgl 29
                   vCp+Cg+
     EHT99592.1 63 VCPQCGA 69
                   6777775 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0039
  zf-NADH-PPase  11 aptepaeggwarvCpaCg 28 
                    ++t+ +++++   Cp+C+
     EHT99592.1  93 TETIDKPDETTIDCPQCQ 110
                    579999***********8 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.1
  zf-NADH-PPase  23 vCpaC 27 
                    +Cp+C
     EHT99592.1 146 RCPHC 150
                    79988 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0058       3.5       3      14 ..      11      22 ..      10      25 .. 0.81
   2 ?    7.2   0.2    0.0066         4       6      13 ..      63      70 ..      60      73 .. 0.83
   3 ?   -0.5   0.3       1.7     1e+03       7      10 ..     106     109 ..     104     114 .. 0.88
   4 ?   -1.5   0.6       3.5   2.1e+03       6      10 ..     146     150 ..     144     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0058
     zf-RRN7  3 kgppCgvCgcrs 14
                k  pC++Cg+ +
  EHT99592.1 11 KQDPCPACGAEL 22
                668******965 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0066
     zf-RRN7  6 pCgvCgcr 13
                +C++Cg++
  EHT99592.1 63 VCPQCGAD 70
                8*****95 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.7
     zf-RRN7   7 CgvC 10 
                 C++C
  EHT99592.1 106 CPQC 109
                 9999 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.5
     zf-RRN7   6 pCgvC 10 
                 +C+ C
  EHT99592.1 146 RCPHC 150
                 79999 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.6      0.14        81      14      29 ..      13      27 ..      11      43 .. 0.84
   2 ?    2.7   0.9      0.19   1.1e+02      16      46 ..      64      93 ..      58      98 .. 0.67
   3 ?    7.8   0.6    0.0048       2.9      15      29 ..     105     119 ..     102     138 .. 0.82
   4 ?    1.5   0.1      0.43   2.6e+02      14      24 ..     145     154 ..     143     164 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.14
       PADR1 14 ekCpeCkegqlvfdss 29
                ++Cp C+  +lv +s+
  EHT99592.1 13 DPCPACG-AELVIRSG 27
                69*****.88877665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.19
       PADR1 16 CpeCkegqlvfdssgYkCtGnmsewtkCtfk 46
                Cp+C+    v++++++      s++  C+++
  EHT99592.1 64 CPQCG-ADKVLRQGRFGMFIGCSDYPACDYT 93
                9***9.5555566655555555666666666 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0048
       PADR1  15 kCpeCkegqlvfdss 29 
                  Cp+C++g+lv ++s
  EHT99592.1 105 DCPQCQQGKLVQRRS 119
                 7*********97666 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.43
       PADR1  14 ekCpeCkegql 24 
                 ++Cp+C+   l
  EHT99592.1 145 GRCPHCE-FPL 154
                 68****8.555 PP

>> Ribosomal_L37ae  Ribosomal L37ae protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.7   4.2e+02      31      47 ..      10      26 ..       1      29 [. 0.76
   2 ?    7.4   0.1    0.0076       4.5      33      48 ..      61      76 ..      54      93 .. 0.89
   3 ?    1.3   0.2       0.6   3.6e+02      30      47 ..     100     118 ..      76     135 .. 0.70
   4 ?   -2.0   0.2       6.6   3.9e+03      36      52 ..     147     165 ..     143     178 .. 0.51

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.7
                     HS-BEESSSSSSEEEEE CS
  Ribosomal_L37ae 31 hakytCpfcgktkvkRk 47
                     +++  Cp cg + v R+
       EHT99592.1 10 RKQDPCPACGAELVIRS 26
                     56667*****9999886 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0076
                     -BEESSSSSSEEEEEE CS
  Ribosomal_L37ae 33 kytCpfcgktkvkRka 48
                      + Cp+cg +kv R++
       EHT99592.1 61 GHVCPQCGADKVLRQG 76
                     699**********986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.6
                      HHS-BEESSSSSS.EEEEE CS
  Ribosomal_L37ae  30 qhakytCpfcgkt.kvkRk 47 
                       +++  Cp+c++   v+R+
       EHT99592.1 100 DETTIDCPQCQQGkLVQRR 118
                      4556679999987345555 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 6.6
                      ESSSSSS..EEEEEETTEE CS
  Ribosomal_L37ae  36 Cpfcgkt..kvkRkavgiw 52 
                      Cp c+      k++a gi 
       EHT99592.1 147 CPHCEFPllVEKKTAQGIR 165
                      6666665422355566664 PP

>> DUF2752  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.8     0.073        44      10      26 ..      14      30 ..      12      41 .. 0.69
   2 ?    2.5   0.0      0.25   1.5e+02       6      16 ..      59      69 ..      55      74 .. 0.80
   3 ?    1.0   0.2      0.76   4.6e+02       7      14 ..     102     109 ..     101     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.073
     DUF2752 10 pCPGCGltRavhallhg 26
                pCP+CG    + +  hg
  EHT99592.1 14 PCPACGAELVIRSGKHG 30
                8*****76555555555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.25
     DUF2752  6 ltGipCPGCGl 16
                l G  CP CG 
  EHT99592.1 59 LEGHVCPQCGA 69
                55888*****5 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.76
     DUF2752   7 tGipCPGC 14 
                 t i+CP C
  EHT99592.1 102 TTIDCPQC 109
                 789***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1350.52
//
Query:       EHT99593.1  [L=190]
Description: hypothetical protein CKS_1486 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-43  148.0   0.0    2.1e-43  147.9   0.0    1.0  1  Sua5_yciO_yrdC  Telomere recombination


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.0   1.2e-47   2.1e-43       3     179 .]      17     190 .]      15     190 .] 0.95

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 1.2e-47
                     HHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHHHTT CS
  Sua5_yciO_yrdC   3 lrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae.seveeealkllerfwPGpitlllkrskeklpkevapg 96 
                     l++ +++a+pte v+gL+cd++ne+av  l ++K+rp +k l++++a+ ++lk +++ +++++e+ + + ++wPGp+t+++++s    p++++++
      EHT99593.1  17 LNQHAVIAYPTEAVFGLGCDPDNESAVMALLALKKRPVEKGLILIAADYDQLKPYISdEALTTEQRERMFACWPGPVTFVVPASPV-TPRWLTGQ 110
                     7899*****************************************************9999*********************7555.******** PP

                     TTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  97 lktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                      +++++r++d+p +++L++a+g+plv+TSanlsg+p++ + eev+ ++g  +  +l+g+   +  +s + d+++   +++R+G
      EHT99593.1 111 FDSLAIRVSDHPDVQALCRAFGKPLVSTSANLSGQPPCRSVEEVKLQFGTAF-PVLNGKTGGRLNPSEIRDVIS--GNLIRQG 190
                     ************************************************9998.689999999999********6..6788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1444.59
//
Query:       EHT99594.1  [L=272]
Description: NAD(P)-binding dehydroshikimate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-25   88.4   0.0    4.5e-25   87.7   0.0    1.4  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    3.1e-10   39.6   0.2    3.1e-10   39.6   0.2    1.9  2  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
    1.7e-09   37.9   0.1    2.6e-09   37.3   0.1    1.2  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.027   14.9   0.0      0.047   14.1   0.0    1.3  1  NAD_binding_7   Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   9.9e-29   4.5e-25       1      83 []       6      88 ..       6      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 9.9e-29
                    EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83
                    v+G+pi+hS+SP ih+a+++++g+  +y+ ++ + d++++ ++++ + g aG+n+T+PfK+++ +++d+l+e+A+  gAvNt+
      EHT99594.1  6 VFGHPISHSKSPHIHQAFARQTGISLQYDRIDAPVDAFPETLRTFFHDGGAGANITLPFKQQAWAFADQLTERAALSGAVNTL 88
                    89********************************************************************************7 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.1   4.8e+03       6      11 ..      19      24 ..      19      24 .. 0.85
   2 !   39.6   0.2     7e-14   3.1e-10       1      30 [.     237     266 ..     237     267 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                HHHHHH CS
       SDH_C  6 veQgae 11
                ++Q+++
  EHT99594.1 19 IHQAFA 24
                8***86 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 7e-14
                 HHHHHHHHHHHHHHHHHS----HHHHHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPvevMreal 30 
                 GLgMLv+Q+a +F+lW+G++p ++++ + l
  EHT99594.1 237 GLGMLVGQAAHAFHLWHGVMPKIAPVIASL 266
                 9********************999998877 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   5.8e-13   2.6e-09      12      85 ..     119     190 ..     111     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 5.8e-13
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH.T.ET-EEEEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel.kgeeiealkleelkellaeadvvisatas 85 
                   +++ ll+GaG  a+ v+  Ll+ g++ ++v+NRt  +a++la e+ +   i+a++++ l +  +++d+vi at+s
    EHT99594.1 119 DSHLLLVGAGGAARGVILPLLSMGAT-ITVVNRTALNAQTLAAEFaHRGAINACSFDALVD--RHFDIVINATSS 190
                   56889*********************.******************6555689999999986..59********98 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     1e-05     0.047       8      70 ..     120     189 ..     117     193 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeee......lekdleg.adlviaatd 70 
                     + l+vG+G  A   +  ll+ ga++tvv  +  ++     ++a +       +++ +++ +d+vi at+
     EHT99594.1 120 SHLLLVGAGGAARGVILPLLSMGATITVVNRTALNAQTLAAEFAHRGainacsFDALVDRhFDIVINATS 189
                    689***************************9942222222222222211111145556654568888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2181.48
//
Query:       EHT99595.1  [L=85]
Description: hypothetical protein CKS_1484 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-22   78.1   0.1    4.3e-22   77.9   0.1    1.0  1  DUF1488   Protein of unknown function (DUF1488)


Domain annotation for each model (and alignments):
>> DUF1488  Protein of unknown function (DUF1488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.1   2.4e-26   4.3e-22       1      82 []       5      81 ..       5      81 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 2.4e-26
                EEE----EEETTTTEEEEEEEETTEEEEEEEEHHHH....HTS---HHHHHHHHHHTHHHHHHHHHHHHHTT---TTS-EEE CS
     DUF1488  1 IlFpdrrsydaarqaVrFpalvdgreveCavsaeaLedhfgaeslreedllaaFeahRfdieeaaerlieaeggdedgtilL 82
                I+Fpdr+s + + +aV+Fp+lv+g+ ++Ca+s eaL++ fg+      +++ +F++hR+d+e+ ae  i++++ d++g+++L
  EHT99595.1  5 IQFPDRESLNTELRAVCFPVLVNGMGLTCAISVEALNEQFGEG-----EAMTLFRHHRWDLEDQAEDCIRNDQVDNEGWVWL 81
                9***********************************9999965.....589*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 714.01
//
Query:       EHT99596.1  [L=188]
Description: putative transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   55.2  10.6    9.9e-08   31.4   2.3    4.2  4  Hexapep    Bacterial transferase hexapeptide (six repeats)
      1e-07   31.5   6.8    0.00034   20.3   1.4    3.4  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.1e-05     0.094       8      35 ..      19      46 ..      13      47 .. 0.90
   2 !    7.0   0.1   0.00058       5.2      18      34 ..      50      66 ..      49      67 .. 0.89
   3 !   23.3   1.6   4.2e-09   3.7e-05       2      34 ..      81     112 ..      80     112 .. 0.94
   4 !   31.4   2.3   1.1e-11   9.9e-08       1      34 [.      97     130 ..      97     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
                EEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  8 vlIgpfaviggnVkIGdnvkIgagvvig 35
                v+++p +v++g+V+  d+v I++ v i+
  EHT99596.1 19 VMVDPTSVVAGDVIMEDDVGIWPLVAIR 46
                899*******************988776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00058
                TTEEE-TTEEEETTEEE CS
     Hexapep 18 gnVkIGdnvkIgagvvi 34
                + V+IG ++ I  g+v+
  EHT99596.1 50 NQVHIGARTNIQDGSVL 66
                789***********997 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 4.2e-09
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 ++IG++v++g+ a++ ++++IG++v +g g+ +
  EHT99596.1  81 LIIGEDVTVGHKAML-HGCTIGNRVLVGMGSIV 112
                 78*************.************99975 PP

  == domain 4  score: 31.4 bits;  conditional E-value: 1.1e-11
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +++IG+ vl+g++++++++V++ d+v Igag+ +
  EHT99596.1  97 GCTIGNRVLVGMGSIVLDGVIVEDDVMIGAGSLV 130
                 699****************************987 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.034   3.1e+02       2      10 ..      52      60 ..      51      66 .. 0.80
   2 !   20.3   1.4   3.7e-08   0.00034       1      32 [.      80     112 ..      80     114 .. 0.95
   3 !   10.4   0.2   4.6e-05      0.41       2      15 ..     116     129 ..     115     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.034
                EEE-TT-EE CS
   Hexapep_2  2 viIGdnCli 10
                v+IG++++i
  EHT99596.1 52 VHIGARTNI 60
                889988877 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 3.7e-08
                 .EEE-TT-EE-TT-EE.SEEE-TT-EE-TT-EE CS
   Hexapep_2   1 pviIGdnCliGanagi.GvslGdncvvgaGvvi 32 
                 p+iIG+++ +G  a   G ++G+++ vg+G+++
  EHT99596.1  80 PLIIGEDVTVGHKAMLhGCTIGNRVLVGMGSIV 112
                 89*************88*************998 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 4.6e-05
                 EEE-TT-EE-TT-E CS
   Hexapep_2   2 viIGdnCliGanag 15 
                 vi++d+++iGa + 
  EHT99596.1 116 VIVEDDVMIGAGSL 129
                 77788888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1636.88
//
Query:       EHT99597.1  [L=144]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-12   48.3   9.0    2.1e-12   47.6   9.0    1.4  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0013   18.6   6.2     0.0016   18.2   6.2    1.1  1  FAM184           Family with sequence similarity 184, A and B
     0.0015   18.8   5.7      0.013   15.9   0.7    2.5  2  Csm1_N           Csm1 N-terminal domain
     0.0032   16.1   6.8     0.0033   16.0   6.8    1.0  1  FUSC             Fusaric acid resistance protein family
     0.0038   17.0   2.8      0.041   13.6   0.4    2.0  2  LXG              LXG domain of WXG superfamily
     0.0051   16.0   2.4     0.0064   15.7   2.4    1.2  1  Phage_HK97_TLTM  Tail length tape measure protein
     0.0075   15.9   1.8     0.0081   15.8   1.8    1.0  1  Exonuc_VII_L     Exonuclease VII, large subunit
  ------ inclusion threshold ------
      0.014   15.2  10.8      0.017   14.9  10.8    1.0  1  ERM              Ezrin/radixin/moesin family
      0.017   14.4   2.0       0.02   14.1   1.4    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.026   13.7   3.8      0.047   12.8   3.7    1.3  1  PDCD7            Programmed cell death protein 7
      0.035   14.1  10.9      0.049   13.7  10.9    1.1  1  DHR10            Designed helical repeat protein 10 domain
      0.039   14.3   6.1      0.067   13.5   6.1    1.3  1  Troponin         Troponin
      0.056   13.3   2.3      0.076   12.8   2.3    1.2  1  RD3              RD3 protein
      0.059   12.6   2.4      0.075   12.3   2.4    1.0  1  TMPIT            TMPIT-like protein
      0.081   13.1   0.2       0.19   11.8   0.2    1.7  1  Zn-ribbon_8      Zinc ribbon domain
      0.095   12.6   3.5       0.12   12.2   3.5    1.1  1  PCRF             PCRF domain
       0.12   12.6  10.2       0.42   10.8   2.1    2.1  1  ATG16            Autophagy protein 16 (ATG16)
       0.13   11.8   0.7       0.31   10.6   0.0    1.8  2  DUF3145          Protein of unknown function (DUF3145)
       0.15   11.6   7.9        0.4   10.2   7.9    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
       0.24   11.7   1.7         14    6.0   0.1    2.1  2  DUF948           Bacterial protein of unknown function (DUF94
       0.24   11.7   7.2       0.06   13.7   3.1    1.9  2  HalX             HalX domain
       0.24   11.2   3.5        1.8    8.4   0.1    2.1  2  Mt_ATP-synt_D    ATP synthase D chain, mitochondrial (ATP5H)
       0.24   11.0  10.9       0.49   10.0  10.9    1.5  1  Lebercilin       Ciliary protein causing Leber congenital ama
       0.26   11.4   9.2       0.62   10.2   0.2    2.9  3  DUF1192          Protein of unknown function (DUF1192)
       0.33    9.5   1.9        0.4    9.2   1.9    1.1  1  FapA             Flagellar Assembly Protein A
       0.36   11.2   8.0       0.47   10.8   8.0    1.2  1  OmpH             Outer membrane protein (OmpH-like)
       0.39   11.1   1.9        1.2    9.6   1.9    1.8  1  zf-IS66          zinc-finger binding domain of transposase IS
       0.49   10.4   3.2       0.47   10.4   1.3    1.7  2  DUF4446          Protein of unknown function (DUF4446)
       0.55   10.3   3.7        4.4    7.4   0.0    2.6  2  G-gamma          GGL domain
       0.62    9.9   4.4        1.3    8.8   4.4    1.5  1  USP8_interact    USP8 interacting
       0.72   10.5  10.3    5.1e+02    1.4  10.3    2.7  1  SlyX             SlyX
       0.78    9.8   9.1        1.3    9.0   0.7    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
        1.2    9.5   8.1       0.49   10.7   1.8    2.1  2  DUF641           Plant protein of unknown function (DUF641)
        5.2    7.7  13.4        5.9    7.5   2.2    2.6  2  MerR-DNA-bind    MerR, DNA binding
        5.6    7.5  10.6         49    4.5   9.3    2.5  1  ZapB             Cell division protein ZapB
        6.1    6.4   8.9         16    5.0   8.9    1.7  1  HAUS6_N          HAUS augmin-like complex subunit 6 N-terminu
        6.5    6.5   8.5         27    4.5   8.8    1.6  1  FdhE             Protein involved in formate dehydrogenase fo


Domain annotation for each model (and alignments):
>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   9.0   4.4e-15   2.1e-12       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4.4e-15
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99597.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   6.2   3.4e-06    0.0016     114     196 ..      10      96 ..       7     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.4e-06
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99597.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 67888888777776555777788***************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7   2.6e-05     0.013      21      56 ..      22      57 ..      10      72 .. 0.81
   2 ?    5.2   0.4     0.057        28      33      53 ..      71      91 ..      69      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-05
      Csm1_N 21 lvsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                 + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99597.1 22 TIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                57888899************************9864 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.057
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99597.1 71 ARQVREAEERISALQEEMAEV 91
                578999999********9986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.8   6.8e-06    0.0033     213     295 ..       4      92 ..       1     129 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.8e-06
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT99597.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 44889***********************************999**********999996667788888888888888888777766441 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   8.4e-05     0.041     152     193 ..      17      58 ..       4      65 .. 0.86
   2 ?    4.3   0.2     0.058        28      97     131 ..      63      97 ..      62     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.4e-05
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99597.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.058
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99597.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 57788888999999999999999999999887666 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.4   1.3e-05    0.0064      47     106 ..      34      90 ..      15      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99597.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      677789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.8   1.7e-05    0.0081     144     229 ..      10      96 ..       3     141 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99597.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************98844.222222 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9  10.8   3.6e-05     0.017      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-05
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99597.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66889999999**********************************999999887335577789*******************9875 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   4.1e-05      0.02      24      76 ..      37      91 ..      33      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.1e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99597.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> PDCD7  Programmed cell death protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.7   9.7e-05     0.047     178     256 ..      20     107 ..      13     111 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.7e-05
       PDCD7 178 eafesklekLrkvlkkrteeyskEEkaLkvmLeeeqe......eerkrerekrkkkekeellekk...vesvLFGepadavlqpfrqy 256
                 ++   k+ ++ ++l++r + y+ E  +Lk  +++ q        e+ re+ +r+ +e ee ++     + +vL  +++ a++qp rq+
  EHT99597.1  20 QTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRmqfgksSEKLREKTARQVREAEERISALqeeMAEVLGEQHDPALPQPLRQS 107
                 55567899************************99998777776555566666666666654333222366666555999999999986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  10.9    0.0001     0.049      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.0001
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99597.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 66789******************************************988999*************************985 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   6.1   0.00014     0.067      46     120 ..       9      97 ..       3     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT99597.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.3   0.00016     0.076      45     127 ..      16      95 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
         RD3  45 keeeerkaetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevlaenevevkeivelfksvlkevleer 127
                  +e++   ++ ++Y++l s+        ase ++L  l ak++  + gk  +++re++a +  e++e +++++  + evl e+
  EHT99597.1  16 LQEQQTTIRKMAEYNRLLSQR---VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQ 95 
                 567777788899******965...455799*************************************9999999999998776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.4   0.00016     0.075      12      92 ..      13      95 ..       6     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99597.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445555566665555555556777777665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2    0.0004      0.19      23      36 ..     125     138 ..     118     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0004
  Zn-ribbon_8  23 dapltaCPeCgsev 36 
                   +++t+CP+Cg+e+
   EHT99597.1 125 SPAETTCPACGGEL 138
                  467899*****976 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.5   0.00025      0.12      19      96 ..      18      96 ..       5     100 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00025
                TTGGGSSSTTHHHHHTHHHHHHH.HHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSS CS
        PCRF 19 edqekakklskelaeleeiveal.eeleealedleeakell..eedeelaelaeeeleelekeleeleeelkklLlpkden 96
                e+q++++k+++  + l++ v+a+ +e++++++ +++++++   ++ e+l+e    +++e+e+++++l+ee+ ++L   +++
  EHT99597.1 18 EQQTTIRKMAEYNRLLSQRVAAYaSEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLG--EQH 96
                33334444333333344444433134555555555555565334778999999999******************99..433 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.1   0.00088      0.42     109     157 ..       7      55 ..       4      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00088
       ATG16 109 eelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlq 157
                 +e ++l++ l+e++++++++ + ++ l+++++  + e++ +++lv +lq
  EHT99597.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQ 55 
                 67899****************************************9998 PP

>> DUF3145  Protein of unknown function (DUF3145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.9   9.1e+02     108     127 ..      10      28 ..       7      57 .. 0.72
   2 ?   10.6   0.0   0.00065      0.31     106     149 ..      67     110 ..      60     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
     DUF3145 108 drlrallekaaedeeelaee 127
                 +rlrall++++++ +++a e
  EHT99597.1  10 ARLRALLQEQQTTIRKMA-E 28 
                 688999888766655554.3 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00065
     DUF3145 106 sEdrlrallekaaedeeelaeeldkllGtawDeeL.epfRsageg 149
                  E+  r++ e a+e+ ++l+ee++++lG++ D +L +p R+++  
  EHT99597.1  67 REKTARQVRE-AEERISALQEEMAEVLGEQHDPALpQPLRQSSAR 110
                 5666666665.77999******************95688888765 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.9   0.00083       0.4      69     152 ..      12      97 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00083
  HAUS-augmin3  69 levileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   l++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99597.1  12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   556677777777777777777778888999999999999999998874477888899************************98766 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1      0.05        24      23      67 ..      11      54 ..       9      59 .. 0.78
   2 ?    6.0   0.1     0.029        14      26      55 ..      65      94 ..      57     100 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.05
      DUF948 23 klkktldeaaatieelekqvdpilkevedllakvnelledvnekl 67
                +l+ +l+e ++ti+++ +  + +++ v++  +++n+ l+ +  kl
  EHT99597.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINR-LKALVAKL 54
                678889999999999999999999999999999999.44444444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.029
      DUF948 26 ktldeaaatieelekqvdpilkevedllak 55
                k+ +++a++++e e+++ ++ +e++++l +
  EHT99597.1 65 KLREKTARQVREAEERISALQEEMAEVLGE 94
                555667777777777777777777777655 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       4.5   2.2e+03      43      57 ..      11      25 ..       6      34 .. 0.49
   2 ?   13.7   3.1   0.00012      0.06       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 4.5
        HalX 43 rleelraqldetlde 57
                rl +l ++  +t+  
  EHT99597.1 11 RLRALLQEQQTTIRK 25
                444444444444333 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00012
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT99597.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0037       1.8      79     124 ..       5      51 ..       1      61 [. 0.77
   2 ?    3.7   1.2       0.1        51      88     119 ..      59      90 ..      52      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0037
                    ----TTT.THHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-XX CS
  Mt_ATP-synt_D  79 ypedkyt.eevdaeekevkkeikefkeeskkrieelekeleklksll 124
                    yp ++ +  ++ +e+++  ++++e++    +r++ + +e+++lk+l+
     EHT99597.1   5 YPDENARlRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALV 51 
                    55555555556667777888899*********************986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
                    HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_D  88 vdaeekevkkeikefkeeskkrieelekelek 119
                      + +++  ++ +  + e+++ri+ l++e+++
     EHT99597.1  59 FGKSSEKLREKTARQVREAEERISALQEEMAE 90 
                    56777888999999999999999999999986 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9     0.001      0.49      32     109 ..       7      86 ..       3      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
  Lebercilin  32 kEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqe.kerelekklkekea.ellrlkdklkklkk 109
                  En  L++l   q+  ++k  + +  L+q +a   +E+  l++ + k+q  +  + ++kl+ek a +++++++ +++l++
  EHT99597.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRmQFGKSSEKLREKTArQVREAEERISALQE 86 
                 58999999999999999999999999999999999999999998888776245566666666544145555666665554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       8.1   3.9e+03      36      47 ..       9      20 ..       7      27 .. 0.72
   2 ?   10.2   0.2    0.0013      0.62      25      45 ..      33      53 ..      32      58 .. 0.90
   3 ?    5.7   1.1     0.031        15      22      37 ..      74      89 ..      73      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.1
     DUF1192 36 IaRleaaiakkk 47
                 aRl+a +++ +
  EHT99597.1  9 NARLRALLQEQQ 20
                578888777655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0013
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99597.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.031
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99597.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.9   0.00083       0.4     336     403 ..      27      90 ..       5     101 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00083
        FapA 336 keklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelke 403
                  e  + l +++ ++ +e+++lk+ ++kl+ ++  k      ++  +k+ ++  + +e++++l+ee++e
  EHT99597.1  27 AEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGK----SSEKLREKTARQVREAEERISALQEEMAE 90 
                 22224556666666888888888877777755444....44555555555555555556666555553 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.0   0.00096      0.47       9      84 ..      14      93 ..       9     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00096
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelq 84
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l 
  EHT99597.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLG 93
                57777888888899999999*********************966655.234666666666677777777774444444444 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.9    0.0024       1.2       1      17 [.     128     144 .]     128     144 .] 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0024
     zf-IS66   1 prtCpcCGgllkpiged 17 
                 ++tCp CGg+l  +g d
  EHT99597.1 128 ETTCPACGGELNALGCD 144
                 79*******99888876 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.8   3.9e+02      40      74 ..       9      43 ..       5      46 .. 0.74
   2 ?   10.4   1.3   0.00098      0.47      19      72 ..      39      92 ..      32      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.8
     DUF4446 40 gksleellkekleeveelkeeseelekeieeleek 74
                ++ l  ll+e+ ++++++ e ++ l++++++  ++
  EHT99597.1  9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                56677888888888888888888888888776665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00098
     DUF4446 19 vllvklkklkkkykklmkgkdgksleellkekleeveelkeeseelekeieele 72
                +   ++++lk  + kl++ + gks e+l +++ ++v+e++e+ ++l++e++e+ 
  EHT99597.1 39 AYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVL 92
                5677899*****************************************999875 PP

>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.4      0.06        29       2      32 ..      35      66 ..      34      73 .. 0.89
   2 ?    7.4   0.0    0.0092       4.4      14      52 ..      66     108 ..      60     112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.06
     G-gamma  2 qlklklkreieqLkkeLkr.erikvSkAceel 32
                q++ ++  ei++Lk  +++ +r++  k++e+l
  EHT99597.1 35 QRVAAYASEINRLKALVAKlQRMQFGKSSEKL 66
                77889999***************999999887 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0092
     G-gamma  14 LkkeLkr...eri.kvSkAceelidYvestkDpllpevwgpps 52 
                 L+++ +r   e   ++S   ee+ +   +++Dp+lp + +++s
  EHT99597.1  66 LREKTARqvrEAEeRISALQEEMAEVLGEQHDPALPQPLRQSS 108
                 5555444332334477888899999999********9966655 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.4    0.0026       1.3       2      49 ..      12      61 ..      11      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHT99597.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgK 61
                   9***************************************9998776553 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4  10.3       1.1   5.1e+02      22      53 ..      12      43 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99597.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                66778899999999999999999999776655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.7    0.0028       1.3      23      69 ..      11      57 ..       7      61 .. 0.87
   2 ?    4.8   2.3     0.059        29      45      70 ..      63      88 ..      60      94 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0028
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHT99597.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                5666778899*************************999999999875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.059
  TMF_DNA_bd 45 lekeikelkkkleklekeleeleerl 70
                +ek  +++ +++++ e+ ++ l+e++
  EHT99597.1 63 SEKLREKTARQVREAEERISALQEEM 88
                55556666666666666666666655 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.8     0.001      0.49      71     121 ..       7      57 ..       1      65 [. 0.87
   2 ?    2.7   1.0      0.32   1.5e+02      89     119 ..      62      92 ..      58      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.001
      DUF641  71 aeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeks 121
                  e+++l+a +qeq+  ++ +    + l + + a  sei++Lk+ ++++++ 
  EHT99597.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57 
                 57899*************************************988888765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.32
      DUF641  89 tyeitvkkleaelkakdseieeLkekLeeae 119
                 + e+  +k  +++++ ++ i+ L+e+++e+ 
  EHT99597.1  62 SSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 6678888999999999999999999999875 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.0     0.039        19      21      64 ..      13      56 ..       9      57 .. 0.85
   2 ?    7.5   2.2     0.012       5.9      32      60 ..      61      89 ..      58      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.039
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHT99597.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   788866666777778888***********************997 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.012
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHT99597.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   6788999*****************98655 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.3       0.1        49      18      69 ..      21      88 ..      16      99 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.1
        ZapB 18 dtitlLqmeieeLkeeneelkeenreleeeneqlk................eereawqerlkkLLgkl 69
                +ti+++ + ++ L ++++++++e+++l++ + +l+                 +  + +er+++L +++
  EHT99597.1 21 TTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQrmqfgksseklrektaRQVREAEERISALQEEM 88
                57888888888888888888888888884444444444555555555666633334455555554444 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.9     0.033        16     156     226 ..      12      76 ..       7     113 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.033
     HAUS6_N 156 lrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkae...............keaakkekkeasedaeeekikkvrn 226
                 lr +l+e ++    ++k+ e+ +ll++++ + ++e+ +l+a++  +               k                   ++vr+
  EHT99597.1  12 LRALLQEQQTT---IRKMAEYNRLLSQRVAAYASEINRLKALVA-KlqrmqfgksseklreK-----------------TARQVRE 76 
                 56667777777...899999999999999999999999888775.22444444333333322.................3333333 PP

>> FdhE  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.8     0.056        27      64     176 ..      24     136 ..       8     140 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.056
                 HHHHTT--TT-HHHHHHH-TTHHHHHHHHHT--S-SSHHHHHHHHHHHH--HHHHHHHHHHHHTT-GGGS-GGGHHHHHHHHHHHHHH..HHHT--TTS CS
        FdhE  64 raqehgmpplaakalerdeawqelLqallealkeelpealrealerlrkadaeelealadallageleavdaakavfvaaAlqvvwtk..laaaldaka 160
                 r+ ++  ++l++ ++++ ++  + L+al+++l+     +  e l++  + + +e e+ ++al ++  e   +++ + + + l+   ++  l a+l++++
  EHT99597.1  24 RKMAEYNRLLSQ-RVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDPALPQPLRQSSARkpLPASLPRET 121
                 333333334443.33334444556888888888877777788888888888899999999999999999999999999999987776523689999999 PP

                 SS-.-TT-SS-TTT-- CS
        FdhE 161 laelaeekglCPvCgs 176
                 l  l+ ++++CP+Cg+
  EHT99597.1 122 L-TLSPAETTCPACGG 136
                 9.889999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1935  (0.107926); expected 358.6 (0.02)
Passed bias filter:                     1079  (0.0601818); expected 358.6 (0.02)
Passed Vit filter:                       162  (0.00903564); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 1038.15
//
Query:       EHT99598.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99598.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 875.71
//
Query:       EHT99599.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99599.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99599.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99599.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99599.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 817.93
//
Query:       EHT99600.1  [L=535]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-34  119.1   0.3    2.2e-19   70.1   0.0    2.2  2  DDE_Tnp_ISL3   Transposase
    1.6e-06   28.6   7.4    1.6e-06   28.6   7.4    2.1  1  zf-ISL3        zinc-finger of transposase IS204/IS1001/IS1096
    1.5e-05   24.9   0.8    4.4e-05   23.4   0.1    2.2  2  HTH_29         Winged helix-turn helix
    0.00018   21.6   0.0    0.00079   19.6   0.0    2.2  1  HTH_17         Helix-turn-helix domain
    0.00032   20.7   0.5     0.0059   16.7   0.2    2.8  2  HTH_7          Helix-turn-helix domain of resolvase
     0.0042   16.8   3.7      0.019   14.7   0.5    3.4  3  HTH_23         Homeodomain-like domain
     0.0096   15.6   0.0      0.024   14.3   0.0    1.6  1  Sigma70_r4_2   Sigma-70, region 4
  ------ inclusion threshold ------
      0.027   14.3   0.2      0.093   12.5   0.2    2.0  1  HTH_38         Helix-turn-helix domain
      0.027   14.3   0.0       0.07   13.0   0.0    1.6  1  Phage_AlpA     Prophage CP4-57 regulatory protein (AlpA)
      0.032   14.0   0.1      0.098   12.4   0.1    1.9  1  MerR           MerR family regulatory protein
      0.044   13.9   0.3      0.044   13.9   0.3    3.7  4  HTH_28         Helix-turn-helix domain
      0.051   13.4   0.0       0.34   10.7   0.0    2.4  2  HTH_IclR       IclR helix-turn-helix domain
       0.14   12.0   1.8        3.6    7.5   0.1    2.9  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   1.6e-22   2.2e-19       1     177 [.     156     353 ..     156     372 .. 0.71
   2 !   47.2   0.1   1.7e-15   2.3e-12      91     239 ..     382     529 ..     379     530 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.6e-22
  DDE_Tnp_ISL3   1 lgiDEislkkghkyvtvvvdllvdggrlldilpgRkketlkafleslsekerekveavvmDmsaayksavkealPnAkivvDrFHvvklanealdev 97 
                   +giDE ++++gh+y t +v+l  d++r l  lpgR+++tl a++++       ++++v+ D    y+ a+++ +P+A+ v+Dr+H+ k +++al+++
    EHT99600.1 156 VGIDEWAWHRGHRYGTLIVNL--DTHRPLVLLPGREQRTLAAWFKKY-----PEIQVVSRDRGGIYALAARDGAPQATQVADRWHLLKNIGDALERM 245
                   69*******************..**********************66.....57******************************************* PP

  DDE_Tnp_ISL3  98 Rrreqkel....re.......ekrkklkrsrrlllknpenlteeqkqr.................ldelleaspelekaYelkeelrevfrkkdkee 166
                     r++  +    +e       +++++ + s+ ll  + ++   +++ +                 +++++ +s+ + + +   +++ e+ +k  +  
    EHT99600.1 246 MYRHMPLMrlvaTElspkkqnTEASPATASKLLLPERIKRQRRDKRYQrwaevdslhkkgcgireISRITGLSRVTVRRWIQSKAFPEISTKPPRPG 342
                   9999888855551144444544444455555555444444433333333455555555555555555566666666666666666666666444555 PP

  DDE_Tnp_ISL3 167 arkalkewiek 177
                       ++ew+e+
    EHT99600.1 343 LLDPWQEWLEE 353
                   55555555555 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 1.7e-15
  DDE_Tnp_ISL3  91 nealdevRrreqkel..reekrkklkrsrrlllknpenlteeqkqrldell.easpelekaYelkeelrevfrkkdkeearkalkewiekaersglk 184
                    +a+++ R+++   +  +++  +  + sr+l+  +  + +e+ ++r+ el+ + +p+l+ a +l  ++ ++++     + +++l++w +++ +sgl 
    EHT99600.1 382 RDAVTKWRKQVNGPViaPGRLPSASRVSRWLMPWRMVRGEENYASRFIELMcQKEPQLKMAQQLSLDFYRMLK----TKNKSQLNQWFADVSKSGLV 474
                   677888888888777665566677778899999999999999999987754499**************99999....678999************** PP

  DDE_Tnp_ISL3 185 efkklaktlknhreeIlnyfdsrlsngpvEgiNnkikaikrrayGfrnfenfrlr 239
                    ++++a+ +++ ++ I +++ sr+sng+vEg  n++k +kr+ yG   fe +r r
    EHT99600.1 475 DLQRVAAGMEADATAIYEAISSRWSNGVVEGHVNRLKMLKRQMYGRAGFELLRRR 529
                   *********************************************9999999877 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   7.4   1.2e-09   1.6e-06       3      46 ..      37      80 ..      35      83 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.2e-09
     zf-ISL3  3 hrCPnCgsktvvkhgkkerrvrhlpiggkrvyLrlrkrRyrCke 46
                 +CP+C +++  +h+ ++rr++hlp+ g+ ++L +  r ++C++
  EHT99600.1 37 AQCPECLKRSSSVHSCRRRRIQHLPCSGQALWLIFAIRHWYCRN 80
                78*****************************************8 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   3.2e-08   4.4e-05       7      34 ..     301     327 ..     296     330 .. 0.94
   2 ?   -2.9   0.1       5.1     7e+03      27      37 ..     379     389 ..     377     393 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.2e-08
      HTH_29   7 llaeGvstvsqiAkllglsrrtvyrwlk 34 
                 l+++G++ +++i +++glsr tv+rw+ 
  EHT99600.1 301 LHKKGCG-IREISRITGLSRVTVRRWIQ 327
                 8*****9.******************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.1
      HTH_29  27 rtvyrwlkrfe 37 
                 +tv++++  ++
  EHT99600.1 379 TTVRDAVTKWR 389
                 55555555444 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.7e-07   0.00079       4      29 ..     308     333 ..     306     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.7e-07
      HTH_17   4 veEaAelLgvsrstvyrlirrgelpa 29 
                 + E++++ g+sr tv+r+i+++ +p 
  EHT99600.1 308 IREISRITGLSRVTVRRWIQSKAFPE 333
                 789********************986 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.5   6.9e+02      23      40 ..     123     140 ..     113     141 .. 0.87
   2 !   16.7   0.2   4.3e-06    0.0059       7      40 ..     292     324 ..     284     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.5
                 -STTTSSSS---SSSS-- CS
       HTH_7  23 siskIAkevnisRsTvYR 40 
                 ++++IA  v+is  T+ R
  EHT99600.1 123 KRAAIASGVQISADTLLR 140
                 5789***********988 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.3e-06
                 -HHHHGGGGSSTTTT--STTTSSSS---SSSS-- CS
       HTH_7   7 skndinrvvkLleeGisiskIAkevnisRsTvYR 40 
                  + ++++v  L+++G  i++I +++++sR Tv R
  EHT99600.1 292 YQ-RWAEVDSLHKKGCGIREISRITGLSRVTVRR 324
                 33.5***************************977 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.48   6.6e+02      29      48 ..     188     215 ..     185     217 .. 0.67
   2 !   14.7   0.5   1.4e-05     0.019      20      39 ..     308     327 ..     289     329 .. 0.87
   3 ?   -1.8   0.0       2.2     3e+03      30      44 ..     377     390 ..     377     395 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.48
      HTH_23  29 vsrrTvyrwlkry.......r.eeGleg 48 
                 + +rT+  w k+y       r ++G+ +
  EHT99600.1 188 REQRTLAAWFKKYpeiqvvsRdRGGIYA 215
                 5689*********655544422455655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.4e-05
      HTH_23  20 vreIAreLgvsrrTvyrwlk 39 
                 +reI+r+ g sr Tv+rw++
  EHT99600.1 308 IREISRITGLSRVTVRRWIQ 327
                 89****************97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.2
      HTH_23  30 srrTvyrwlkryree 44 
                 s+ Tv+  + ++r +
  EHT99600.1 377 SETTVRDAVTKWR-K 390
                 6778888888885.3 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.7e-05     0.024      26      48 ..     305     327 ..     303     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                   ---HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrls 48 
                   g+ ++EI++++g+s +tV+++++
    EHT99600.1 305 GCGIREISRITGLSRVTVRRWIQ 327
                   8889*****************97 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   6.8e-05     0.093      15      40 ..     300     325 ..     296     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.8e-05
      HTH_38  15 rllaeGlslreIArrLgrspsTIsRE 40 
                  l+++G+++reI r+ g s+ T+ R 
  EHT99600.1 300 SLHKKGCGIREISRITGLSRVTVRRW 325
                 69*********************995 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     5e-05      0.07       6      30 ..     308     332 ..     307     335 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5e-05
  Phage_AlpA   6 lreVeqktglsrstiYrlikdgeFP 30 
                 +re+  +tglsr t+ r+i+ + FP
  EHT99600.1 308 IREISRITGLSRVTVRRWIQSKAFP 332
                 689999******************* PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.1e-05     0.098       2      21 ..     308     327 ..     307     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHTTTHHHHHHHHH CS
        MerR   2 IgevAeltGvsprtLRyYEr 21 
                 I+e++++tG+s  t+R++ +
  EHT99600.1 308 IREISRITGLSRVTVRRWIQ 327
                 99****************86 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.4   1.9e+03      10      34 ..     117     144 ..     113     149 .. 0.72
   2 ?   13.9   0.3   3.2e-05     0.044      14      34 ..     307     327 ..     293     328 .. 0.87
   3 ?   -2.8   0.1       5.1   7.1e+03      25      38 ..     377     390 ..     375     391 .. 0.77
   4 ?   -3.4   0.2       8.3   1.1e+04      26      33 ..     405     412 ..     404     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.4
      HTH_28  10 aaGh..svreaArelgisrrtv.yrWik 34 
                 a G+   ++++A  ++is +t+ +r ++
  EHT99600.1 117 AGGEagKRAAIASGVQISADTLlRRVVQ 144
                 5555557788999999999999666665 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.2e-05
      HTH_28  14 svreaArelgisrrtvyrWik 34 
                  +re++r+ g+sr tv+rWi+
  EHT99600.1 307 GIREISRITGLSRVTVRRWIQ 327
                 89******************8 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.1
      HTH_28  25 srrtvyrWikryee 38 
                 s++tv++ + ++++
  EHT99600.1 377 SETTVRDAVTKWRK 390
                 67888888888876 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 8.3
      HTH_28  26 rrtvyrWi 33 
                  ++v+rW+
  EHT99600.1 405 ASRVSRWL 412
                 68999**8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.6   2.2e+03      11      30 ..     215     234 ..     214     236 .. 0.85
   2 ?   10.7   0.0   0.00025      0.34      17      40 ..     304     327 ..     300     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.6
                 T-CTTBSS-BHHHHHHHHTS CS
    HTH_IclR  11 alaeapqeltlselArrtgl 30 
                 ala+++++   +++A+r +l
  EHT99600.1 215 ALAARDGAPQATQVADRWHL 234
                 69999999999****98665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00025
                 SS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  17 qeltlselArrtglpkStvhRlLq 40 
                  + +++e++r tgl++ tv+R +q
  EHT99600.1 304 KGCGIREISRITGLSRVTVRRWIQ 327
                 67899****************877 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3      0.11   1.5e+02      21      38 ..     125     142 ..     124     144 .. 0.91
   2 ?    7.5   0.1    0.0026       3.6      21      36 ..     309     324 ..     307     327 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  HTH_AsnC-type  21 aeLAervGlSestvlrRv 38 
                    a++A  v +S++t lrRv
     EHT99600.1 125 AAIASGVQISADTLLRRV 142
                    68999************8 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0026
  HTH_AsnC-type  21 aeLAervGlSestvlr 36 
                    +e+++ +GlS+ tv+r
     EHT99600.1 309 REISRITGLSRVTVRR 324
                    8*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 4290.84
//
Query:       EHT99601.1  [L=204]
Description: resolvase-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-41  141.8   0.0    2.2e-41  141.4   0.0    1.2  1  Resolvase  Resolvase, N terminal domain
    0.00032   20.7   0.0    0.00064   19.8   0.0    1.5  1  HTH_7      Helix-turn-helix domain of resolvase
      0.005   16.6   0.0       0.63    9.9   0.0    2.4  2  TetR_N     Bacterial regulatory proteins, tetR family
     0.0068   16.2   0.4       0.27   11.1   0.0    2.4  2  HTH_8      Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.057   13.6   0.0    2.1  2  HTH_17     Helix-turn-helix domain
      0.025   14.5   0.0      0.057   13.4   0.0    1.6  1  HTH_11     HTH domain
      0.045   13.6   0.0       0.13   12.2   0.0    1.8  1  MarR_2     MarR family
      0.046   13.7   0.1       0.35   10.9   0.0    2.4  3  HTH_29     Winged helix-turn helix
      0.051   13.9   0.0       0.17   12.2   0.0    1.8  2  HTH_Tnp_1  Transposase
      0.058   13.3   0.0       0.17   11.8   0.0    1.7  2  HTH_5      Bacterial regulatory protein, arsR family
      0.061   13.4   0.1       0.23   11.5   0.1    2.2  2  HTH_20     Helix-turn-helix domain
      0.068   13.3   0.3       0.19   11.9   0.0    1.9  2  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.0   1.5e-44   2.2e-41       2     146 .]       3     143 ..       2     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 1.5e-44
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEES CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvsl 100
                 igY+RvS+ + +++++ Q++ l a++ +    +   +eD  +SG+ ++Rpgl+++l+alre  gd+lvv+kldRL+R++ +l++++++l  +gv l++l
  EHT99601.1   3 IGYMRVSKIDGSQTTDLQRDGLLAAGVSP-AHL---YEDY-ASGKIEDRPGLMNCLKALRE--GDTLVVWKLDRLGRDLHHLINMVHDLTGRGVGLKVL 94 
                 8*********5556************888.447...****.********************..************************************ PP

                 S.....SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 101 de.g..idtstpmgrlllqilaalaeferelirertkeglaaakakGkk 146
                 +  g  idt+t++g+l+++i+aalaefereli+ert++gla a+a+G+k
  EHT99601.1  95 TGhGaaIDTTTAAGKLVFGIFAALAEFERELISERTRAGLASARARGRK 143
                 *63599*****************************************95 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.3e-07   0.00064       1      40 [.     145     185 ..     145     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.3e-07
                 S---SS-HHHHGGGGSSTTTT.--STTTSSSS---SSSS-- CS
       HTH_7   1 GRpsklskndinrvvkLleeG.isiskIAkevnisRsTvYR 40 
                 GRp k +  ++  + +   ++ + + +++ke++i+R+T+YR
  EHT99601.1 145 GRPFKMTTAKLRLAMAAMGKPeTRVGDLCKELDITRQTLYR 185
                 56666666655555655666667899**************9 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.026        39      25      38 ..      26      39 ..      25      42 .. 0.85
   2 !    9.9   0.0   0.00042      0.63      16      36 ..     166     186 ..     158     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.026
                HHTSSHHHHHHHTS CS
      TetR_N 25 rAGvskgalYryFp 38
                +AGvs+++lY  ++
  EHT99601.1 26 AAGVSPAHLYEDYA 39
                7*********8665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00042
                 T--HHHHHHHHTSSHHHHHHH CS
      TetR_N  16 attvreIAkrAGvskgalYry 36 
                 +t v ++ k++ +++ +lYr+
  EHT99601.1 166 ETRVGDLCKELDITRQTLYRH 186
                 68899***************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.068     1e+02       2      11 ..     118     127 ..     117     128 .. 0.87
   2 !   11.1   0.0   0.00018      0.27      23      37 ..     171     185 ..     159     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.068
                 HHHHHHHHHH CS
       HTH_8   2 leevEkelIe 11 
                 l+e+E+elI 
  EHT99601.1 118 LAEFERELIS 127
                 89*******7 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00018
                 HHHHHHTS-HHHHHH CS
       HTH_8  23 kAArlLGisRrtLyr 37 
                 + +++L+i+R+tLyr
  EHT99601.1 171 DLCKELDITRQTLYR 185
                 5689**********9 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.3   3.4e+03      12      22 ..      28      39 ..      27      44 .. 0.73
   2 ?   13.6   0.0   3.8e-05     0.057       4      29 ..     169     195 ..     168     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.3
      HTH_17 12 gvsrstvy.rli 22
                gvs++++y +++
  EHT99601.1 28 GVSPAHLYeDYA 39
                89******4455 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.8e-05
      HTH_17   4 veEaAelLgvsrstvyrlir.rgelpa 29 
                 v ++++ L++ r+t+yr i+ +gel++
  EHT99601.1 169 VGDLCKELDITRQTLYRHISpAGELRP 195
                 6799***************98999987 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.8e-05     0.057      18      36 ..     169     187 ..     158     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
      HTH_11  18 geeLAeeLnvSrrtvrrdI 36 
                   +L +eL+++r+t +r+I
  EHT99601.1 169 VGDLCKELDITRQTLYRHI 187
                 678***************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-05      0.13       4      41 ..     151     186 ..     148     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
                 -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2   4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsri 41 
                 t a +r+ +a    p+   +vg+l+++l+++++++ r+
  EHT99601.1 151 TTAKLRLAMAAMGKPE--TRVGDLCKELDITRQTLYRH 186
                 5566666666666666..8**************98776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         3   4.5e+03      26      39 ..      46      59 ..      45      63 .. 0.75
   2 ?   -1.3   0.2       1.5   2.3e+03      42      52 ..     132     142 ..     123     152 .. 0.54
   3 ?   10.9   0.0   0.00024      0.35       8      33 ..     158     187 ..     154     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3
      HTH_29 26 rrtvyrwlkrfeeg 39
                r+  +++lk+ +eg
  EHT99601.1 46 RPGLMNCLKALREG 59
                67778888888887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
      HTH_29  42 aalldrrrsgr 52 
                 a+l + r++gr
  EHT99601.1 132 AGLASARARGR 142
                 44444222333 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00024
      HTH_29   8 laeGvs....tvsqiAkllglsrrtvyrwl 33 
                 +  +++    +v +++k l+++r+t yr++
  EHT99601.1 158 AMAAMGkpetRVGDLCKELDITRQTLYRHI 187
                 4444444588999***************98 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         3   4.4e+03      33      41 ..      27      35 ..      26      36 .. 0.86
   2 ?   12.2   0.0   0.00011      0.17      10      54 ..     154     195 ..     151     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3
   HTH_Tnp_1 33 hgvspnqLy 41
                 gvsp++Ly
  EHT99601.1 27 AGVSPAHLY 35
                59******9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
   HTH_Tnp_1  10 efKariVreslepgksvsevArrhgvspnqLykWrrqyregeeas 54 
                   ++++ +   +p ++v ++++++++ +++Ly+ ++ +  ge+ +
  EHT99601.1 154 KLRLAMAAMG-KPETRVGDLCKELDITRQTLYRHISPA--GELRP 195
                 5566666666.99*******************988775..55555 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.6   9.8e+03       8      13 ..      53      58 ..      53      61 .. 0.53
   2 ?   11.8   0.0   0.00011      0.17      15      36 ..     166     187 ..     156     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.6
                HHHHTT CS
       HTH_5  8 LklLae 13
                Lk+L+e
  EHT99601.1 53 LKALRE 58
                455555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00011
                 SEEHHHHHHHHTS-HHHHHHHH CS
       HTH_5  15 elcvcelaeelglsqstvShHL 36 
                 e+ v++l++el++++ t+ +H 
  EHT99601.1 166 ETRVGDLCKELDITRQTLYRHI 187
                 789******************6 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.4   8.1e+03      41      52 ..      49      60 ..      45      63 .. 0.69
   2 ?   11.5   0.1   0.00016      0.23      27      45 ..     169     187 ..     113     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.4
                HHHHHHHHHHCT CS
      HTH_20 41 lsyHLrvLeeag 52
                l + L++L+e +
  EHT99601.1 49 LMNCLKALREGD 60
                556688888865 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00016
                 HHHHHHHHTS-HHHHHHHH CS
      HTH_20  27 aselaerldlskntlsyHL 45 
                 +++l+++ld++++tl++H+
  EHT99601.1 169 VGDLCKELDITRQTLYRHI 187
                 789***************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4       8.4   1.3e+04      42      51 ..     132     141 ..     128     144 .. 0.56
   2 ?   11.9   0.0   0.00013      0.19      13      33 ..     166     187 ..     154     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.4
      HTH_28  42 agLvprrrrp 51 
                 agL+  r r+
  EHT99601.1 132 AGLASARARG 141
                 6666644433 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
      HTH_28  13 h.svreaArelgisrrtvyrWi 33 
                 + +v ++++el i+r+t+yr i
  EHT99601.1 166 EtRVGDLCKELDITRQTLYRHI 187
                 258999**************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1552.17
//
Query:       EHT99602.1  [L=153]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-22   77.3   0.1    9.3e-22   76.8   0.1    1.2  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    4.3e-16   58.2   0.3    8.1e-16   57.3   0.2    1.5  2  HTH_24          Winged helix-turn-helix DNA-binding
    3.8e-13   49.0   0.4      6e-13   48.4   0.4    1.3  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00084   19.4   0.0     0.0013   18.7   0.0    1.3  1  HTH_20          Helix-turn-helix domain
     0.0094   15.9   0.1      0.017   15.1   0.1    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.027   14.1   0.0    1.3  1  DDRGK           DDRGK domain
       0.13   12.2   0.0       0.34   10.9   0.0    1.7  1  DUF4223         Protein of unknown function (DUF4223)
       0.17   11.9   0.0          3    7.9   0.0    2.6  3  SLH             S-layer homology domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   4.1e-25   9.3e-22       1      75 []      68     142 ..      68     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 4.1e-25
                     EEEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepgh.peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v+++++ +h +++++ f +++  +peV+ +yr+tG+ydyll+v+v d++ +++f+++ ++++ g+ ++++s+ +e+
      EHT99602.1  68 VMIKTQ-NHsHDWYQHFVAQVNSMPEVMTFYRTTGEYDYLLHVAVSDMKGYDDFYKKMVRTVSGLSDVTSSFSMEE 142
                     799***.555****************************************************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.2   3.6e-19   8.1e-16       1      48 []       2      49 ..       2      49 .. 0.98
   2 ?   -2.6   0.0       1.9   4.3e+03      25      32 ..      58      65 ..      58      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 3.6e-19
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld++d+++L+lLq++  ++ ++LA +++l+p+++++r+krLe+eG+I+
  EHT99602.1  2 LDKKDKELLRLLQRDCTLCLQDLAAAVDLTPNPCWKRIKRLEDEGIIT 49
                79*********************************************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
      HTH_24 25 erlglSps 32
                ++l+lS++
  EHT99602.1 58 DKLNLSLT 65
                689**987 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.4   2.7e-16     6e-13       1      42 []       2      43 ..       2      43 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.7e-16
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+ D+ +L++Lq+d+ +  ++LA++v l+++++++R++rLe
     EHT99602.1  2 LDKKDKELLRLLQRDCTLCLQDLAAAVDLTPNPCWKRIKRLE 43
                   8****************************************8 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.9e-07    0.0013      14      57 ..       8      51 ..       1      52 [. 0.93

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.9e-07
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                ++lr+L r+  l++ +la+++dl++n + ++++ Le+ g+++++
  EHT99602.1  8 ELLRLLQRDCTLCLQDLAAAVDLTPNPCWKRIKRLEDEGIITGR 51
                6899**99*********************************987 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   7.6e-06     0.017      22      66 ..      19      61 ..       5      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.6e-06
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEEES-HHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisrgrririldleaLr 66
                l  ++lA+ + lt+  + + +++L++eg+i+ gr + +l+ ++L+
  EHT99602.1 19 LCLQDLAAAVDLTPNPCWKRIKRLEDEGIIT-GR-VALLSKDKLN 61
                4569**************************9.65.9999999985 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.027     105     145 ..      10      50 ..       3      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 HHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-E CS
       DDRGK 105 inyikekKvvlleelavkfklktqevierikeLeeqgsltG 145
                 +  ++      l++la+  +l+ + + +rik Le++g +tG
  EHT99602.1  10 LRLLQRDCTLCLQDLAAAVDLTPNPCWKRIKRLEDEGIITG 50 
                 555666667789****************************9 PP

>> DUF4223  Protein of unknown function (DUF4223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.34      31      42 ..     101     112 ..      95     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
     DUF4223  31 CsYdYLlHPais 42 
                  +YdYLlH a+s
  EHT99602.1 101 GEYDYLLHVAVS 112
                 68********99 PP

>> SLH  S-layer homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0014         3       4      27 ..      29      50 ..      28      52 .. 0.90
   2 ?   -2.8   0.1       2.9   6.6e+03      25      30 ..     114     119 ..     112     123 .. 0.61
   3 ?    0.6   0.0      0.26   5.9e+02       3      20 ..     132     147 ..     130     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
         SLH  4 DvkkhdawakdaiealaelGiisG 27
                D  +++ w  + i+ l ++Gii+G
  EHT99602.1 29 DLTPNPCW--KRIKRLEDEGIITG 50
                7788888*..*************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
         SLH  25 isGypd 30 
                 ++Gy+d
  EHT99602.1 114 MKGYDD 119
                 566655 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.26
         SLH   3 kDvkkhdawakdaieala 20 
                 +Dv ++  +++++i++ +
  EHT99602.1 132 SDVTSS--FSMEEIKYTT 147
                 899***..6669999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1126.99
//
Query:       EHT99603.1  [L=315]
Description: drug/metabolite transporter (DMT) superfamily permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-47  161.7  50.6    1.3e-26   93.4  21.6    2.0  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
        2.1    8.0   6.5        8.5    6.1   1.3    2.5  3  DUF4579   Domain of unknown function (DUF4579)
        8.3    6.2  12.5         20    5.0   0.0    5.1  5  DUF3188   Protein of unknown function (DUF3188)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4  21.6   2.2e-30   1.3e-26       4     136 ..       7     138 ..       4     139 .. 0.98
   2 !   74.7  21.0   1.3e-24   7.8e-21       3     136 ..     152     286 ..     150     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 2.2e-30
        EamA   4 illallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsleP 102
                 ++l+ll+a++w++++++++i+ ++++p+++t++rf++a+ +l+ ia+l++ +l  +++ + l+ + ++++++++ f+l++y+ +++s++ as+i++ +P
  EHT99603.1   7 LILFLLVAMTWGTTWLAMRIAAETIPPVFATGMRFMFAAPFLMSIAWLRKTPL-LFPPGQRLFQFGICIFYFAIPFSLMIYGETYVSSGLASIIFANMP 104
                 7899*************************************************.********************************************* PP

        EamA 103 vftlilsvlllgekltlkqllgivlillGvllil 136
                 v +li sv++l+ek +++q++g+ +++++++ il
  EHT99603.1 105 VAVLIASVIFLNEKTNSMQIAGLTVAIVALAGIL 138
                 *****************************99887 PP

  == domain 2  score: 74.7 bits;  conditional E-value: 1.3e-24
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                 gil ++ a++++ai ++ +k+ +++vs +t++++ +++ag++l++  +++e+++ + +s  ++l+ l+lg++++v++ l++f +++k sa +asl++++
  EHT99603.1 152 GILALVSAVIIHAIIYTQCKKRSCTVSVITFNALPCFLAGLILSAAGWFFEKPQlSAFSAHSILATLYLGAFAGVFGILCYFALQQKASAFQASLVFLI 250
                 89999********************************************************************************************** PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvllil 136
                  P++++ l ++++g  ++  ++l i+  + G++l+l
  EHT99603.1 251 FPLIAVSLESYIYGYAISTQSMLFIIPLVTGIFLTL 286
                 **********************************97 PP

>> DUF4579  Domain of unknown function (DUF4579)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3    0.0068        41      31      88 ..     145     176 ..     102     183 .. 0.56
   2 ?    4.0   0.3    0.0063        38      31      65 ..     145     177 ..     140     220 .. 0.73
   3 ?    6.1   1.3    0.0014       8.5      25      81 ..     232     288 ..     195     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0068
     DUF4579  31 lnerlwkgvllfivsvvvvslrlisevanqealtaflvfgllvglwliisslekRklv 88 
                 ++e++w+g+l ++ +v++                            +i +  +kR ++
  EHT99603.1 145 STESHWQGILALVSAVIIH--------------------------AIIYTQCKKRSCT 176
                 3345555555555555544..........................4444444555444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0063
     DUF4579  31 lnerlwkgvllfivsvvvvslrlisevanqealta 65 
                 ++e++w+g+l ++ +v++ ++   +  +    +t 
  EHT99603.1 145 STESHWQGILALVSAVIIHAIIYTQCKKR--SCTV 177
                 6789*********9999887765543333..3443 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0014
     DUF4579  25 vfvleylnerlwkgvllfivsvvvvslrlisevanqealtaflvfgllvglwliiss 81 
                  f+l+   + ++ +++ +i+ ++ vsl +        + ++ ++ +l++g++l++ s
  EHT99603.1 232 YFALQQKASAFQASLVFLIFPLIAVSLESYIYGYAISTQSMLFIIPLVTGIFLTLFS 288
                 477888888888888888888888888887777777777778888888888885544 PP

>> DUF3188  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.064   3.8e+02       1      11 [.      44      54 ..      44      55 .. 0.88
   2 ?   -1.5   0.0      0.36   2.1e+03      13      27 ..      84      98 ..      79     101 .. 0.83
   3 ?    1.7   0.5     0.035   2.1e+02       6      25 ..     107     125 ..     102     139 .. 0.63
   4 ?    5.0   0.0    0.0033        20      26      43 ..     184     201 ..     179     203 .. 0.92
   5 ?    2.0   0.4     0.028   1.7e+02       5      38 ..     253     286 ..     252     291 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.064
     DUF3188  1 aAplLillgll 11
                aAp+L +++ l
  EHT99603.1 44 AAPFLMSIAWL 54
                8*******965 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.36
     DUF3188 13 llysqrqgsdrlqsl 27
                ++y+ ++ s +l+s+
  EHT99603.1 84 MIYGETYVSSGLASI 98
                569999999999998 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.035
     DUF3188   6 illgllillysqrqgsdr.lq 25 
                 +l++ +i+l  + + +   ++
  EHT99603.1 107 VLIASVIFL--NEKTNSMqIA 125
                 89*******..4443322244 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0033
     DUF3188  26 slPallvGlgLivsgavg 43 
                 +lP +l+Gl L  +g+++
  EHT99603.1 184 ALPCFLAGLILSAAGWFF 201
                 8**************985 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.028
     DUF3188   5 Lillgllillysqrqgsdr.lqslPallvGlgLiv 38 
                 Li+++l   +y+   +++  l+ +P+ ++G++L++
  EHT99603.1 253 LIAVSLESYIYGYAISTQSmLFIIPL-VTGIFLTL 286
                 66677777777777777777777775.89***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2447.41
//
Query:       EHT99604.1  [L=374]
Description: TniQ family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   44.9   0.1    3.3e-11   44.1   0.1    1.4  1  TniQ       TniQ
  ------ inclusion threshold ------
       0.06   13.7   0.1       0.14   12.5   0.1    1.6  1  TetR_C_11  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TniQ  TniQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   3.6e-15   3.3e-11      26     137 .]       2     134 ..       1     134 [. 0.82

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.6e-15
        TniQ  26 spkellrglfaeskrsladedldlnl.erLaeltglspeeleemtlegyl.....................asvllekakrekkllgeaisrrglrrsg 102
                 ++++ll++ +++ +    de+ +l+l +++++++g+  ++l++m ++g++                      svll+k++ +   ++++++++    + 
  EHT99604.1   2 EVRDLLEHDLGHDQVVDLDEAPPLSLlRAISQRSGIGLDRLRSMSFAGWVpwlldglapdlpdalatyvfqFSVLLPKHHHRIITITNWRAWQP-ILPI 99 
                 567788888877766666666666559*******************************************555555555555555555555555.7788 PP

        TniQ 103 rryCplClaedgepywrllWrlalvtvCprHqcrL 137
                  r+CplCl++ +++   l+W+++l+  Cp H+c+L
  EHT99604.1 100 YRACPLCLKDPARQITLLVWKVPLMLSCPLHGCWL 134
                 8*********9998888****************98 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.5e-05      0.14      11      54 ..     301     344 ..     295     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
   TetR_C_11  11 Lrallralaealaspragallrallaeaqrdpelaealrerlle 54 
                 ++a+ +a+++a + p++++ l al++  qrdpe  +++r+ + e
  EHT99604.1 301 IEAINEAVVDARHNPETARSLFALASYGQRDPESLARVRAMFAE 344
                 6788899*********************************6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2887.32
//
Query:       EHT99605.1  [L=302]
Description: NTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-78  259.9   0.0    1.2e-77  259.6   0.0    1.1  1  TniB      Bacterial TniB protein
    3.1e-14   53.4   0.0    4.8e-14   52.8   0.0    1.3  1  AAA_22    AAA domain
     0.0018   18.7   0.0      0.006   17.0   0.0    1.8  1  AAA_16    AAA ATPase domain
  ------ inclusion threshold ------
      0.052   12.3   0.0        0.1   11.3   0.0    1.4  2  AAA_32    AAA domain
      0.058   12.9   0.0       0.82    9.2   0.0    2.2  2  AAA_7     P-loop containing dynein motor region
      0.097   13.1   0.1        0.8   10.1   0.1    2.1  1  AAA       ATPase family associated with various cellular acti
       0.11   11.9   0.0       0.59    9.4   0.0    1.9  2  ATPase    KaiC


Domain annotation for each model (and alignments):
>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.0   4.8e-81   1.2e-77       2     188 ..      28     214 ..      27     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 4.8e-81
        TniB   2 iayiradrwigyprakeilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplka 100
                 i++iradrwigypra ++l+rLe L+++p ++rmpnlllvG++nnGK+mi+ekF+r+hp+++d+d+e +pvlvvq+p++p   r+y a+L+a+gapl++
  EHT99605.1  28 IQRIRADRWIGYPRAVNALNRLETLYAWPGKQRMPNLLLVGPTNNGKSMIIEKFRRTHPASSDADQEYIPVLVVQMPSEPLVLRFYVALLAAMGAPLRP 126
                 899************************************************************************************************ PP

        TniB 101 rarvskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealralrtDpqlasRFepialprwk 188
                 r r+ ++eqq+l+llr+++vrvL+iDE+hn+lag++ ++refln+l++Lgnel+ip+v+vGt++a+ a+r+D+ql++RFep+ lp w+
  EHT99605.1 127 RPRLPEIEQQALTLLRKIGVRVLVIDELHNILAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAYLAIRSDDQLENRFEPVVLPLWE 214
                 ***************************************************************************************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.9e-17   4.8e-14       8     133 ..      64     191 ..      59     195 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.9e-17
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lr. 104
                 l+++G++  GK++ ++++++++++ ++a++e  +v+ v++ps+     ++ +ll a+g +l   r ++ e+ ++    lr+ +v ++l+iDE ++ l  
  EHT99605.1  64 LLLVGPTNNGKSMIIEKFRRTHPASSDADQEYIPVLVVQMPSEPLVLRFYVALLAAMGAPLRP-RPRLPEIEQQALTLLRKIGV-RVLVIDELHNiLAg 160
                 799***********************************************************9.99999999************.**********6658 PP

      AAA_22 105 .s...eealeeLrsllnlsrkgvqliLvGtpel 133
                  s    e l+ Lr l n  +  ++l+ vGt+++
  EHT99605.1 161 nSvnrREFLNLLRFLGN--ELRIPLVGVGTRDA 191
                 73566************..**********9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06     0.006       9     158 ..      46     175 ..      44     186 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaa 107
                 l++L++++    ++r +++ll+G+   GKs ++++++r         ++ ++dq            ++    l+ q+ +e    ++ ++  +l++a++ 
  EHT99605.1  46 LNRLETLYAWPGKQRMPNLLLVGPTNNGKSMIIEKFRRTHP------ASSDADQE-----------YI-P-VLVVQMPSE---PLVLRFYVALLAAMG- 121
                 67899999977788889********************8555......45777777...........56.6.788999888...788999999999999. PP

      AAA_16 108 vpelagaeasrllellkrllallsrderplvlvlDdlq.......wadeaslqllaaL 158
                  ++l++    rl e  +++l ll++ +   vlv+D+l+         + + l+ll++L
  EHT99605.1 122 -APLRPR--PRLPEIEQQALTLLRKIGV-RVLVIDELHnilagnsVNRREFLNLLRFL 175
                 .566665..8999999999999999777.9*******955555555555666666666 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05       0.1       8      81 ..      34     112 ..      27     124 .. 0.88
   2 ?   -3.5   0.0       1.3   3.2e+03     477     502 ..     255     280 ..     250     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
      AAA_32   8 eeiigqeRAveale.....fglkikkkgYNifvlGesgtGrttlvkrlleeiakkeptpdDwcYvnnfdnpeePkalsL 81 
                 +++ig  RAv+al+      +   k++  N+ ++G+++ G++++++++ +++ ++ ++ ++++ v   + p+eP++l++
  EHT99605.1  34 DRWIGYPRAVNALNrletlYAWPGKQRMPNLLLVGPTNNGKSMIIEKFRRTHPASSDADQEYIPVLVVQMPSEPLVLRF 112
                 67899999999987333334566688999************************************************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.3
      AAA_32 477 fseiadllrEAdywakkegaevveae 502
                 + e+++ll+ A++ a ++g+e+++++
  EHT99605.1 255 IGELSHLLMAAAVAAVESGEEAINQR 280
                 57889999999999999999999986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00032      0.82      35      58 ..      63      86 ..      49      97 .. 0.87
   2 ?    1.1   0.0     0.098   2.5e+02     139     172 ..     251     284 ..     244     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00032
       AAA_7 35 pvllvGptGtGKtviikdllkkld 58
                ++llvGpt  GK++ii+++ ++ +
  EHT99605.1 63 NLLLVGPTNNGKSMIIEKFRRTHP 86
                789**************9988766 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.098
       AAA_7 139 kklefkeikdvqlvaamgppgggrneitpRllrh 172
                 ++ ++ e+  + + aa++  ++g++ i++R l++
  EHT99605.1 251 SEGTIGELSHLLMAAAVAAVESGEEAINQRTLSM 284
                 566777899999******************9875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00031       0.8       2     111 ..      65     189 ..      64     210 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
                 EEESSTTSSHHHHHHHHHHH......HTHEEEEEETTTCSSS......................STTHHHHHHHHHHHHHHHTS.......TSEEEEEE CS
         AAA   2 llyGppGtGKTllakavake......lgvefleisgsellsk......................yvgesekkirelfkeakeka.......kpsilfiD 65 
                 ll+Gp   GK+++++   ++      +++e++ + + ++ s+                       + e e++           a       +  +l+iD
  EHT99605.1  65 LLVGPTNNGKSMIIEKFRRThpassdADQEYIPVLVVQMPSEplvlrfyvallaamgaplrprpRLPEIEQQ-----------AltllrkiGVRVLVID 152
                 788888888888888887774443331222222222222222222334444333222222222233333333...........22333433469***** PP

                 TGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS CS
         AAA  66 EidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr 111
                 E++++   +     ++++r    Ll++l ++ +    + ++g+++r
  EHT99605.1 153 ELHNILAGN-----SVNRREFLNLLRFLGNELR----IPLVGVGTR 189
                 *****9888.....6777777777777766655....666666666 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.2   5.2e+02      21      39 ..      63      81 ..      48      96 .. 0.81
   2 ?    9.4   0.0   0.00023      0.59     105     155 ..     131     180 ..     117     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
      ATPase 21 vvlitGepGtGKtifalqF 39
                  l++G +  GK+++ ++F
  EHT99605.1 63 NLLLVGPTNNGKSMIIEKF 81
                5788999999999998888 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00023
      ATPase 105 eelieelaeaikeikakrvviDsitglayeekeavaReilrqlvrvl.kklg 155
                  e+ ++  + +++i+++ +viD + ++   + ++v R+++ +l+r+l ++l+
  EHT99605.1 131 PEIEQQALTLLRKIGVRVLVIDELHNI--LAGNSVNRREFLNLLRFLgNELR 180
                 56667777889****************..8999999*********9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2359.16
//
Query:       EHT99606.1  [L=250]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-13   49.3   0.1    8.4e-13   48.1   0.1    1.6  1  Mu-transpos_C  Mu transposase, C-terminal
  ------ inclusion threshold ------
      0.053   13.0   0.1      0.088   12.3   0.1    1.3  1  Herpes_UL56    Herpesvirus UL56 protein


Domain annotation for each model (and alignments):
>> Mu-transpos_C  Mu transposase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.1   9.4e-17   8.4e-13       3      59 ..      84     146 ..      82     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 9.4e-17
                    TSEEBEEEE--TTTS--EEEEEE-SHHHHSS-S.....EEEEEE-GGGTTEEEEEETTS-.EE CS
  Mu-transpos_C   3 lllpretrtvqrdGirlngnrYwspeLaglvgk.....kVvvryDPrdlsrvyVydldgr.fi 59 
                     +lp  +rt++r+G+ +++++Y+s++L  ++ +      + +r DPrd+sr++V +++g+ ++
     EHT99606.1  84 DFLPIVRRTLTRTGFVIDHIHYYSDALKPWISHrhhlsAFLIRRDPRDISRIWVLEPEGQhYL 146
                    69**************************9999878888*******************999786 PP

>> Herpes_UL56  Herpesvirus UL56 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   9.8e-06     0.088      81     106 ..     196     221 ..     190     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.8e-06
  Herpes_UL56  81 aaqraarrarrraerrarrrsfgpgg 106
                  +aq+a+r+arr a+rr + rs  p  
   EHT99606.1 196 TAQKATRKARREADRRLHLRSSAPPD 221
                  79****************99988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2044.17
//
Query:       EHT99607.1  [L=342]
Description: TniA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-19   68.3   0.0    2.5e-18   66.4   0.0    1.9  2  rve       Integrase core domain
      3e-10   40.1   0.9    7.5e-10   38.8   0.9    1.7  1  HTH_28    Helix-turn-helix domain
    6.9e-06   26.0   0.6    1.8e-05   24.7   0.6    1.7  1  HTH_29    Winged helix-turn helix
    0.00057   19.6   0.8     0.0012   18.6   0.8    1.6  1  HTH_23    Homeodomain-like domain
  ------ inclusion threshold ------
       0.04   13.7   0.0      0.067   13.0   0.0    1.5  1  DDE_3     DDE superfamily endonuclease
       0.07   12.9   0.5       0.14   11.9   0.5    1.6  1  HTH_8     Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   3.4e+03      89     118 ..      21      50 ..      17      51 .. 0.77
   2 !   66.4   0.0   8.4e-22   2.5e-18       2     104 ..     205     329 ..     204     331 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
         rve  89 dlgirvsftrpgrpqdnGkvErfhrtlkde 118
                 ++ + +++     +++  ++Er + tl de
  EHT99607.1  21 QYSCAPKRGLDMASETSQIIERGVATLPDE 50 
                 5666666666677788889*****999987 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 8.4e-22
         rve   2 trpgelwqvDvtvvripdggg.......kayllvvvddfsrlilaealsde..mdastvlalleravarfggve.............pervlsDngsey 78 
                 t+p e++q+D+tvv+++  ++       ++yl++++d+f+r++ +++++ e  ++ s+ l+l ++ ++++ ++e             p+ ++ Dn++e+
  EHT99607.1 205 TAPLEQVQIDHTVVDLIVVDErdrqpigRPYLTIAIDVFTRCVSGMVVTLEapSAVSVGLCLAHVVCDKRPWLEilrvemdwpmsgkPRLLYLDNATEF 303
                 689*********88888888889****************************9889999999999*********************************** PP

         rve  79 tskafrefladlgirvsftrpgrpqd 104
                 +s+a+r+ ++++gir+++ +pg+p++
  EHT99607.1 304 KSEALRRGCEQHGIRLDYRPPGQPHY 329
                 ************************96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.9   2.5e-13   7.5e-10       1      52 []      57     116 ..      57     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 2.5e-13
      HTH_28   1 qRleiikllaa....Gh.svreaArelgisrrtvyrWikryee.gGi.agLvp.rrrrpr 52 
                 qR eii +laa    Gh ++++aA +lgisrr+vy++i+r +e  G+  +L+p r++++r
  EHT99607.1  57 QRTEIIGPLAAlevvGHrAADAAALALGISRRQVYVLIRRAREgSGLvTDLAPdRSGGGR 116
                 899*******999**8879999*********************77753688875678776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.6   5.9e-09   1.8e-05      16      62 ..      77     126 ..      69     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.9e-09
      HTH_29  16 sqiAkllglsrrtvyrwlkrfeegG..laa.lld.rrrsgrprnrlseeqe 62 
                   +A +lg+srr+vy  ++r +eg   +   l + r ++gr++ rlse +e
  EHT99607.1  77 DAAALALGISRRQVYVLIRRAREGSglV-TdLAPdRSGGGRGKGRLSEPVE 126
                 579*********************9643.369999*************998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.8   4.1e-07    0.0012       3      46 ..      54     103 ..      52     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.1e-07
      HTH_23   3 sereRlrillllae....GlsvreIAreL.gvsrrTvyrwlkryre.eGl 46 
                 ++r+R +i+  la     G++ +++A++  g+srr+vy  ++r re +Gl
  EHT99607.1  54 QARQRTEIIGPLAAlevvGHRAADAAALAlGISRRQVYVLIRRAREgSGL 103
                 678899999999966688999999999888*************9886764 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.2e-05     0.067      79     119 ..     288     329 ..     212     332 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
       DDE_3  79 k...kivlilDnasiHkseslrelveeeadrlellylPpySPel 119
                     +  l+lDna+ +kse+lr+  e+  ++++l y Pp  P++
  EHT99607.1 288 MsgkPRLLYLDNATEFKSEALRRGCEQ--HGIRLDYRPPGQPHY 329
                 2444889********************..*********988876 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   4.8e-05      0.14      12      36 ..      66      91 ..      65      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.8e-05
                HHHHHTTT-HHHHHHH.HTS-HHHHH CS
       HTH_8 12 aALertgGnkskAArl.LGisRrtLy 36
                aALe  g + ++AA l LGisRr++y
  EHT99607.1 66 AALEVVGHRAADAAALaLGISRRQVY 91
                78888888777766655*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 3092.86
//
Query:       EHT99608.1  [L=312]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-28   97.1   1.0    2.1e-27   96.0   1.0    1.6  1  Resolvase  Resolvase, N terminal domain
  ------ inclusion threshold ------
      0.014   15.5   0.6      0.068   13.3   0.0    2.3  2  HTH_7      Helix-turn-helix domain of resolvase
      0.016   15.0   0.1      0.047   13.5   0.1    1.7  1  HTH_23     Homeodomain-like domain
          1    9.5   5.8        1.7    8.7   0.2    2.6  2  HTH_3      Helix-turn-helix


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   1.0   4.6e-31   2.1e-27       2     146 .]       6     160 ..       5     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 4.6e-31
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvs 99 
                  +Y+R St+eqd   +r +++l ++a e+++ i + + ++  SGa+leRp+l rll++ r+  gdvl++e++dRL+R    ++ +l   +r++gv +v 
  EHT99608.1   6 RAYLRASTSEQD--AQRARDMLDRFAHEHNVIICNYYAEN-ESGARLERPELFRLLNDSRP--GDVLLIEDVDRLSRLkGDEWEKLKAIIRQRGVWVVA 99 
                 58**********..***************88899999999.********************..***************9999***************** PP

                 SS...............SS-.---H.HHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 100 ldeg.............idt.stpm.grlllqilaalaeferelirertkeglaaakakGkk 146
                 ++ +                 + ++ + +ll++laa+a+ + e++rer+++g+ +aka+Gk+
  EHT99608.1 100 VNVPttwqhlspranefD-SqMFAAiNDMLLDMLAAIARRDYEQRRERQQQGITKAKAAGKY 160
                 **7557777666555532.2344445777*******************************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.49   2.2e+03      10      26 ..     139     155 ..     134     160 .. 0.79
   2 ?   13.3   0.0   1.5e-05     0.068       5      38 ..     164     197 ..     161     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.49
                 HHGGGGSSTTTT--STT CS
       HTH_7  10 dinrvvkLleeGisisk 26 
                 d+++ +++ ++Gi+++k
  EHT99608.1 139 DYEQRRERQQQGITKAK 155
                 78888999999*99887 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.5e-05
                 SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   5 klskndinrvvkLleeGisiskIAkevnisRsTv 38 
                  ++k +++ + +Ll +G+s +++ k  ++sRsT+
  EHT99608.1 164 QVNKPRYDAINRLLLSGSSWTQVQKTIGCSRSTI 197
                 5677799**************************7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     1e-05     0.047      12      39 ..     175     202 ..     169     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
      HTH_23  12 lllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +ll+ G s++++ +  g+sr+T++  +k
  EHT99608.1 175 RLLLSGSSWTQVQKTIGCSRSTISSAIK 202
                 46667******************98877 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5     0.045     2e+02       2      16 ..     143     157 ..     142     164 .. 0.82
   2 ?    8.7   0.2   0.00038       1.7       8      28 ..     179     199 ..     174     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.045
                 HHHHHHTTHHHHHHH CS
       HTH_3   2 kelRkqlglsqeeLA 16 
                 ++ R+q+g++++++A
  EHT99608.1 143 RRERQQQGITKAKAA 157
                 67899******6665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00038
                 TTHHHHHHHHHHTSSHHHHHH CS
       HTH_3   8 lglsqeeLAeklGvsrstisr 28 
                  g s +++++ +G srstis 
  EHT99608.1 179 SGSSWTQVQKTIGCSRSTISS 199
                 5668889************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2380.61
//
Query:       EHT99609.1  [L=1280]
Description: putative invasin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.7e-111  372.1   1.4   6.7e-111  370.1   0.6    2.4  2  IAT_beta    Inverse autotransporter, beta-domain
    1.9e-46  156.3 105.4    8.8e-17   61.2   9.1    7.2  7  Invasin_D3  Invasin, domain 3
    4.7e-40  137.4  14.1    6.5e-40  136.9   0.2    4.3  4  DUF823      Salmonella repeat of unknown function (DUF823)
    2.4e-21   76.5   8.9     0.0028   18.4   0.0    6.3  6  Filamin     Filamin/ABP280 repeat
      1e-12   48.6   0.3        1.4    9.4   0.0    5.7  5  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
    8.6e-11   41.5   8.5        2.5    8.0   0.2    7.3  9  DUF824      Salmonella repeat of unknown function (DUF824)
    2.1e-09   37.2  84.7      0.069   13.2   6.7    9.1  9  Big_1       Bacterial Ig-like domain (group 1)
    3.4e-06   27.1  40.9       0.36   11.1   1.2    7.4  6  He_PIG      Putative Ig domain
     0.0025   18.0  15.5        8.5    6.5   0.3    4.8  4  DUF4442     Domain of unknown function (DUF4442)
     0.0046   17.0   0.0      0.012   15.7   0.0    1.8  1  LysM        LysM domain
  ------ inclusion threshold ------
      0.027   14.7   3.0    1.7e+02    2.6   0.0    4.6  4  PLDc        Phospholipase D Active site motif
       0.05   13.8   8.8         74    3.6   0.1    5.2  5  PurS        Phosphoribosylformylglycinamidine (FGAM) synthase
       0.17   11.4  29.4       0.83    9.2   3.1    5.2  5  ZirS_C      Zinc-regulated secreted antivirulence protein C-t
        1.2    7.6   5.3          3    6.3   5.3    1.6  1  Macoilin    Macoilin family
        2.2    8.0  21.3         12    5.6   0.4    5.3  5  Phage_tube  Phage tail tube protein FII
        6.5    6.9  17.1         29    4.8   1.0    4.7  4  NifU_N      NifU-like N terminal domain


Domain annotation for each model (and alignments):
>> IAT_beta  Inverse autotransporter, beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.1   0.6    6e-114  6.7e-111       2     276 .]     143     417 ..     142     417 .. 0.99
   2 ?   -1.8   0.0       1.4   1.6e+03     206     235 ..    1062    1091 ..    1026    1095 .. 0.84

  Alignments for each domain:
  == domain 1  score: 370.1 bits;  conditional E-value: 6e-114
    IAT_beta   2 sakqigellsedsakeaaksliksaaesevnsevekwLsqfgtarvelnvdsegslkgssldlLlplydnkesllFsQlglrrkddrttvNlGlGlRrf 100
                 +a+++g++l+ +++++aa s+++++a+ ++  ++++wL +fgtarv+l+ d+++slk+s++dlL+plyd+ ++l+F+Q++l+r+d+rt++NlG G+R+f
  EHT99609.1 143 YASRAGSFLAGSAKSDAAASMARGMATGKAGGALQQWLGHFGTARVQLDADKNFSLKNSQFDLLMPLYDQGDNLVFTQGSLHRTDSRTQANLGTGIRHF 241
                 68999********************************************************************************************** PP

    IAT_beta 101 ldewmlGaNaFlDydltsshsRlglGaEawkdylkLsaNyYirlsgwkkskdledyeerpanGyDvraegylPaypqlgaklkyeqYfGdeVdlfdkgk 199
                 +d wm+GaN+F Dydl+++h+R+g+G E+w+d +kL  N Y+ l+gwk+s+dl dy+erpanG+D+r ++++P++pqlg+kl+yeqY+G eV+lf+ ++
  EHT99609.1 242 YDAWMFGANTFIDYDLSRDHARAGVGLEYWRDFVKLGFNGYVHLTGWKDSPDLADYQERPANGWDIRGQAWVPSLPQLGGKLTYEQYYGSEVALFGVDN 340
                 *************************************************************************************************** PP

    IAT_beta 200 rqkdpsavtlglnytpvPlvtleaeekqgksgksdtqlnlqlnyrlGvplskqldpdavaasrslagsrydlVeRnn 276
                 rqk+p+a+t+g+nytpvPl+tl+ae++qg+sgksd++l++++ny+lGvp++ q+dp avaa+rsl+gsrydlVeRnn
  EHT99609.1 341 RQKNPHAITAGINYTPVPLITLGAEQRQGQSGKSDSRLTVDMNYQLGVPWRAQVDPAAVAAMRSLTGSRYDLVERNN 417
                 ****************************************************************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
    IAT_beta  206 avtlglnytpvPlvtleaeekqgksgksdt 235 
                   +tl++ny p + ++++++  + ++gk  t
  EHT99609.1 1062 NITLTVNYVPNSSLSFSIDSVTDRQGKART 1091
                  589999999999999999888888777655 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       9.2     1e+04      18      35 ..     494     511 ..     475     523 .. 0.54
   2 !   61.2   9.1   7.8e-20   8.8e-17       2      93 ..     528     623 ..     527     626 .. 0.85
   3 !   32.8  11.3   5.7e-11   6.4e-08       3      82 ..     631     716 ..     629     731 .. 0.77
   4 !   32.8  11.3   5.7e-11   6.4e-08       3      82 ..     736     821 ..     734     836 .. 0.77
   5 !   32.8  11.3   5.7e-11   6.4e-08       3      82 ..     841     926 ..     839     941 .. 0.77
   6 !   29.5  14.6   5.9e-10   6.6e-07       3      82 ..     946    1031 ..     944    1046 .. 0.77
   7 ?    2.6   2.5      0.15   1.7e+02      50      93 ..    1105    1147 ..    1044    1150 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.2
  Invasin_D3  18 GkststltvtlkDangnp 35 
                  ++t t++  + D++gn 
  EHT99609.1 494 AVNTYTVSGVAVDTKGNR 511
                 344444444555555555 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 7.8e-20
  Invasin_D3   2 pakStftaspasivAdGkststltvtlkDangnpvsg..ltvtfstt..sagtlsavtdngdGtytatLta.ttagtatitptvnGvaiaatatvtl 93 
                 ++ Stft + + + AdGkst++lt+tl+D+n+++v    + ++++ +  ++ ++sa+t +++G+yt+t+ta t  +t+t+tp+v+G ++ ++a+vt+
  EHT99609.1 528 KQHSTFTPASSALPADGKSTQVLTLTLRDENNQAVDMdvKDISLKNStlKSAAVSALTRKSAGVYTVTVTAgTDNETVTLTPSVSG-VTLSPARVTI 623
                 678*******************************55521446666444455599*****************999************.5578888886 PP

  == domain 3  score: 32.8 bits;  conditional E-value: 5.7e-11
  Invasin_D3   3 akStftaspasivAdGkststltvtlkDangnpvsgltvtfstt.....sag...tlsavtdngdGtytatLta.ttagtatitptvnG 82 
                 a+S+++++++s v  G++ + ++vtlkDa+g++v+g+t +++t+     +     + s+++dngdGtyt t ta ++ ++++ t++++ 
  EHT99609.1 631 AQSSISTDKTSYVS-GADMT-VKVTLKDAAGDAVTGATASLTTDavkvaN-AtlkAGSSWKDNGDGTYTGTYTAgAAGDSLKATVQLTD 716
                 89*********976.66655.9********************99765532.2465667899*************666667777777765 PP

  == domain 4  score: 32.8 bits;  conditional E-value: 5.7e-11
  Invasin_D3   3 akStftaspasivAdGkststltvtlkDangnpvsgltvtfstt.....sag...tlsavtdngdGtytatLta.ttagtatitptvnG 82 
                 a+S+++++++s v  G++ + ++vtlkDa+g++v+g+t +++t+     +     + s+++dngdGtyt t ta ++ ++++ t++++ 
  EHT99609.1 736 AQSSISTDKTSYVS-GADMT-VKVTLKDAAGDAVTGATASLTTDavkvaN-AtlkAGSSWKDNGDGTYTGTYTAgAAGDSLKATVQLTD 821
                 89*********976.66655.9********************99765532.2465667899*************666667777777765 PP

  == domain 5  score: 32.8 bits;  conditional E-value: 5.7e-11
  Invasin_D3   3 akStftaspasivAdGkststltvtlkDangnpvsgltvtfstt.....sag...tlsavtdngdGtytatLta.ttagtatitptvnG 82 
                 a+S+++++++s v  G++ + ++vtlkDa+g++v+g+t +++t+     +     + s+++dngdGtyt t ta ++ ++++ t++++ 
  EHT99609.1 841 AQSSISTDKTSYVS-GADMT-VKVTLKDAAGDAVTGATASLTTDavkvaN-AtlkAGSSWKDNGDGTYTGTYTAgAAGDSLKATVQLTD 926
                 89*********976.66655.9********************99765532.2465667899*************666667777777765 PP

  == domain 6  score: 29.5 bits;  conditional E-value: 5.9e-10
  Invasin_D3    3 akStftaspasivAdGkststltvtlkDangnpvsgltvtfstt.....sag...tlsavtdngdGtytatLta.ttagtatitptvnG 82  
                  a+S+++++++s v  G++ + ++vtlkDa+g++v+g+t +++t+     +     + s+++dngdGtyt t ta ++ ++++ t++++ 
  EHT99609.1  946 AQSSISTDKTSYVS-GADMT-VKVTLKDAAGDAVTGATASLTTDavkvaN-AtlkAGSSWKDNGDGTYTGTYTAgAAGDSLKATVQLTD 1031
                  89*********976.66655.9********************99765532.2465667899*************666667777777765 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.15
  Invasin_D3   50 tlsavtdngdGtytatLta.ttagt.atitptvnGvaiaatatvtl 93  
                   +++  ++++G   +tLt    +g+ +ti+++v+G  i+++ +v +
  EHT99609.1 1105 EFKGS-TDENGKLAVTLTDpDGIGVqTTIKVSVDG--IQKETSVIY 1147
                  34444.6677*********999997699*******..556666655 PP

>> DUF823  Salmonella repeat of unknown function (DUF823)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.083        92      93     181 ..     683     773 ..     667     779 .. 0.77
   2 ?    2.7   0.3     0.082        92      93     181 ..     788     878 ..     772     884 .. 0.77
   3 ?    2.4   0.3       0.1   1.1e+02      94     180 ..     894     982 ..     880     986 .. 0.77
   4 !  136.9   0.2   5.8e-43   6.5e-40       1     185 [.    1108    1278 ..    1108    1279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.083
      DUF823  93 nnEtW.itaenveeaaaaqCga.eklptaedLqaLysakpknalettlgwPvasksywssdeslsgekkstyaavnlksgkkktasentts 181
                  +  W  + + +++++ +  +a ++l ++ +L+   s+ +++a + t g Pv+ +s +s d+++  + +++++ v lk+ + + ++ +t+s
  EHT99609.1 683 AGSSWkDNGDGTYTGTYTAGAAgDSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATAS 773
                 5566755556666666666666678888999999999****************99999999977766778999999999887777766655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.082
      DUF823  93 nnEtW.itaenveeaaaaqCga.eklptaedLqaLysakpknalettlgwPvasksywssdeslsgekkstyaavnlksgkkktasentts 181
                  +  W  + + +++++ +  +a ++l ++ +L+   s+ +++a + t g Pv+ +s +s d+++  + +++++ v lk+ + + ++ +t+s
  EHT99609.1 788 AGSSWkDNGDGTYTGTYTAGAAgDSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATAS 878
                 5566755556666666666666678888999999999****************99999999977766778999999999887777766655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.1
      DUF823  94 nEtW.itaenveeaaaaqCga.eklptaedLqaLysakpknalettlgwPvasksywssdeslsgekkstyaavnlksgkkktasentt 180
                 +  W  + + +++++ +  +a ++l ++ +L+   s+ +++a + t g Pv+ +s +s d+++  + +++++ v lk+ + + ++ +t+
  EHT99609.1 894 GSSWkDNGDGTYTGTYTAGAAgDSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATA 982
                 556654555666666666666578888999999999****************9999999997776677899999999988777776665 PP

  == domain 4  score: 136.9 bits;  conditional E-value: 5.8e-43
      DUF823    1 GvTdadGkltltvtqdkglGlktpltvalednaattasldviFtvvTSPDtdkAnmwGhMaetvtasngvtfkRPlLaaElsseaktktvsennEtW 97  
                  G Td++Gkl++t+t+++g+G++t+++v++      +++++vi+tv+TSPDtdkAnmwGhM++t+t+ +gvtf RP L +E   +    ++se nE W
  EHT99609.1 1108 GSTDENGKLAVTLTDPDGIGVQTTIKVSVDG---IQKETSVIYTVITSPDTDKANMWGHMPDTITT-DGVTFVRPDLVSEQPGN--AVKKSEANEIW 1198
                  89*************************9987...58999***************************.**************999..79999****** PP

      DUF823   98 itaenveeaaaaqCgaeklptaedLqaLysakpknalettlgwPvasksywssdeslsgekkstyaavnlksgkkktasenttsavl..C 185 
                    +++   +a+a+C     pt+e+L aLy+  + ++++  +gwP  +  y+ss++ ++g ++  ++ v++++g+ +    +++s+++  C
  EHT99609.1 1199 --STYYFDGATAHCTL---PTKENLLALYN--NLGDVNAVYGWPK-KVIYRSSTQ-VPG-ADGFHTNVDISTGRVNDLGGDAVSSLYvtC 1278
                  ..9999********86...*********99..7899*********.999*99999.554.459**********99888777666554457 PP

>> Filamin  Filamin/ABP280 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.23   2.6e+02      25      81 ..     503     599 ..     463     614 .. 0.57
   2 !   18.4   0.0   2.5e-06    0.0028      17      85 ..     641     706 ..     615     716 .. 0.75
   3 !   18.3   0.0   2.8e-06    0.0031      18      85 ..     748     811 ..     729     821 .. 0.75
   4 !   18.3   0.0   2.8e-06    0.0031      18      85 ..     853     916 ..     834     926 .. 0.75
   5 !   18.3   0.0   2.8e-06    0.0031      18      85 ..     958    1021 ..     939    1031 .. 0.75
   6 ?   -1.5   0.0         4   4.5e+03      18      38 ..    1070    1091 ..    1051    1146 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
                 EEEEESSSTSCCCSTTS..EEEEE..ESSTS....................................................EEEEEEEE-SSSEEEE CS
     Filamin  25 Ftvytkdakgeksevggdelqvrivtgsphgaatk....................................s...........svkievvdnedgtytv 76 
                 + v   d kg++se   ++ qv++  + p+ +++                                     +            +    + +  g+ytv
  EHT99609.1 503 VAV---DTKGNRSER--SDTQVTV--QAPEVNKQHstftpassalpadgkstqvltltlrdennqavdmdvKdislknstlksAAVSALTRKSAGVYTV 594
                 334...444444443..4557777..4444443333334466555555555555554444444444333330333333333322222366666888888 PP

                 EE--S CS
     Filamin  77 sYtpe 81 
                 + t+ 
  EHT99609.1 595 TVTAG 599
                 77765 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.5e-06
                 E.ETTS-EEEEEEESSSTSCCCSTTS..EE...EEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCE CS
     Filamin  17 s.vagesltFtvytkdakgeksevggdelq...vrivtgsphgaatkssvkievvdnedgtytvsYtpeepgt 85 
                 s v g  +t++v +kda g+ +++    l    v++  ++        ++    +dn+dgtyt++Yt+ ++g+
  EHT99609.1 641 SyVSGADMTVKVTLKDAAGDAVTGATASLTtdaVKV--ANA-TL----KAGSSWKDNGDGTYTGTYTAGAAGD 706
                 2567889999**********9998766666333444..222.22....55667****************9986 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 2.8e-06
                 ETTS-EEEEEEESSSTSCCCSTTS..EE...EEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCE CS
     Filamin  18 vagesltFtvytkdakgeksevggdelq...vrivtgsphgaatkssvkievvdnedgtytvsYtpeepgt 85 
                 v g  +t++v +kda g+ +++    l    v++  ++        ++    +dn+dgtyt++Yt+ ++g+
  EHT99609.1 748 VSGADMTVKVTLKDAAGDAVTGATASLTtdaVKV--ANA-TL----KAGSSWKDNGDGTYTGTYTAGAAGD 811
                 6788999***********9998776666333444..222.22....55667****************9986 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 2.8e-06
                 ETTS-EEEEEEESSSTSCCCSTTS..EE...EEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCE CS
     Filamin  18 vagesltFtvytkdakgeksevggdelq...vrivtgsphgaatkssvkievvdnedgtytvsYtpeepgt 85 
                 v g  +t++v +kda g+ +++    l    v++  ++        ++    +dn+dgtyt++Yt+ ++g+
  EHT99609.1 853 VSGADMTVKVTLKDAAGDAVTGATASLTtdaVKV--ANA-TL----KAGSSWKDNGDGTYTGTYTAGAAGD 916
                 6788999***********9998776666333444..222.22....55667****************9986 PP

  == domain 5  score: 18.3 bits;  conditional E-value: 2.8e-06
                  ETTS-EEEEEEESSSTSCCCSTTS..EE...EEE..ESSTS.....EEEEEEEE-SSSEEEEEE--SSSCE CS
     Filamin   18 vagesltFtvytkdakgeksevggdelq...vrivtgsphgaatkssvkievvdnedgtytvsYtpeepgt 85  
                  v g  +t++v +kda g+ +++    l    v++  ++        ++    +dn+dgtyt++Yt+ ++g+
  EHT99609.1  958 VSGADMTVKVTLKDAAGDAVTGATASLTtdaVKV--ANA-TL----KAGSSWKDNGDGTYTGTYTAGAAGD 1021
                  6788999***********9998776666333444..222.22....55667****************9986 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 4
                  ETTS-EEEEEEES.SSTSCCCS CS
     Filamin   18 vagesltFtvytk.dakgekse 38  
                  v + sl+F++++  d +g+ ++
  EHT99609.1 1070 VPNSSLSFSIDSVtDRQGKART 1091
                  5556677777766555555555 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0013       1.4       5      52 ..     631     678 ..     627     722 .. 0.70
   2 !    9.4   0.0    0.0012       1.4       5      52 ..     736     783 ..     732     827 .. 0.70
   3 !    9.4   0.0    0.0012       1.4       5      52 ..     841     888 ..     837     932 .. 0.70
   4 !    9.4   0.0    0.0012       1.4       5      52 ..     946     993 ..     942    1037 .. 0.70
   5 ?    3.5   0.0     0.081        91       7      34 ..    1048    1075 ..    1046    1082 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
                 EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS CS
  Arrestin_C   5 vsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcaf 52 
                  + ++s++k++yv G +++v+v+++   +  v   ++sl+     +a+
  EHT99609.1 631 AQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTDAVKVAN 678
                 5779********************999999888888888665555554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0012
                 EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS CS
  Arrestin_C   5 vsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcaf 52 
                  + ++s++k++yv G +++v+v+++   +  v   ++sl+     +a+
  EHT99609.1 736 AQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTDAVKVAN 783
                 5779********************999999888888888665555554 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0012
                 EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS CS
  Arrestin_C   5 vsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcaf 52 
                  + ++s++k++yv G +++v+v+++   +  v   ++sl+     +a+
  EHT99609.1 841 AQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTDAVKVAN 888
                 5779********************999999888888888665555554 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0012
                 EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS CS
  Arrestin_C   5 vsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcaf 52 
                  + ++s++k++yv G +++v+v+++   +  v   ++sl+     +a+
  EHT99609.1 946 AQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTDAVKVAN 993
                 5779********************999999888888888665555554 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.081
                  EEEEES-SEEETT--EEEEEEEEE-SSS CS
  Arrestin_C    7 leaslpkkgyvpGetipvtvkidndskk 34  
                  l++sl+++ +  G++i++tv+++++s++
  EHT99609.1 1048 LTLSLSEGKVKVGDNITLTVNYVPNSSL 1075
                  899********************99886 PP

>> DUF824  Salmonella repeat of unknown function (DUF824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0023       2.5      12      37 ..     645     670 ..     644     675 .. 0.87
   2 ?   -2.9   0.0       5.5   6.2e+03      11      27 ..     704     720 ..     703     726 .. 0.78
   3 !    8.0   0.2    0.0023       2.5      12      37 ..     750     775 ..     749     780 .. 0.87
   4 ?   -2.9   0.0       5.5   6.2e+03      11      27 ..     809     825 ..     808     831 .. 0.78
   5 !    8.0   0.2    0.0023       2.5      12      37 ..     855     880 ..     854     885 .. 0.87
   6 ?   -2.9   0.0       5.5   6.2e+03      11      27 ..     914     930 ..     913     936 .. 0.78
   7 !    8.0   0.2    0.0023       2.5      12      37 ..     960     985 ..     959     990 .. 0.87
   8 ?   -2.9   0.0       5.5   6.2e+03      11      27 ..    1019    1035 ..    1018    1041 .. 0.78
   9 !    6.8   0.0    0.0051       5.8       8      19 ..    1056    1067 ..    1051    1086 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0023
      DUF824  12 GEsipltitvkDasGnPvpnapftlt 37 
                 G  +++++t kDa+G +v  a+ +lt
  EHT99609.1 645 GADMTVKVTLKDAAGDAVTGATASLT 670
                 5679**************99998887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
      DUF824  11 kGEsipltitvkDasGn 27 
                  G+s++ t+  +D s  
  EHT99609.1 704 AGDSLKATVQLTDWSSK 720
                 699******99997655 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0023
      DUF824  12 GEsipltitvkDasGnPvpnapftlt 37 
                 G  +++++t kDa+G +v  a+ +lt
  EHT99609.1 750 GADMTVKVTLKDAAGDAVTGATASLT 775
                 5679**************99998887 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 5.5
      DUF824  11 kGEsipltitvkDasGn 27 
                  G+s++ t+  +D s  
  EHT99609.1 809 AGDSLKATVQLTDWSSK 825
                 699******99997655 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0023
      DUF824  12 GEsipltitvkDasGnPvpnapftlt 37 
                 G  +++++t kDa+G +v  a+ +lt
  EHT99609.1 855 GADMTVKVTLKDAAGDAVTGATASLT 880
                 5679**************99998887 PP

  == domain 6  score: -2.9 bits;  conditional E-value: 5.5
      DUF824  11 kGEsipltitvkDasGn 27 
                  G+s++ t+  +D s  
  EHT99609.1 914 AGDSLKATVQLTDWSSK 930
                 699******99997655 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0023
      DUF824  12 GEsipltitvkDasGnPvpnapftlt 37 
                 G  +++++t kDa+G +v  a+ +lt
  EHT99609.1 960 GADMTVKVTLKDAAGDAVTGATASLT 985
                 5679**************99998887 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 5.5
      DUF824   11 kGEsipltitvkDasGn 27  
                   G+s++ t+  +D s  
  EHT99609.1 1019 AGDSLKATVQLTDWSSK 1035
                  699******99997655 PP

  == domain 9  score: 6.8 bits;  conditional E-value: 0.0051
      DUF824    8 kaKkGEsiplti 19  
                  k+K+G+ i+lt+
  EHT99609.1 1056 KVKVGDNITLTV 1067
                  9**********9 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       8.7   9.7e+03       8      20 ..     499     511 ..     493     533 .. 0.57
   2 !   12.5   6.8    0.0001      0.11       1      61 [.     542     606 ..     542     609 .. 0.82
   3 ?   -1.6   1.9       2.5   2.8e+03       6      43 ..     602     638 ..     598     640 .. 0.60
   4 !   13.2   6.7   6.1e-05     0.069       8      59 ..     649     706 ..     645     708 .. 0.87
   5 !   13.2   6.7   6.1e-05     0.069       8      59 ..     754     811 ..     750     813 .. 0.87
   6 !   13.2   6.7   6.1e-05     0.069       8      59 ..     859     916 ..     855     918 .. 0.87
   7 !   13.2   6.7   6.1e-05     0.069       8      59 ..     964    1021 ..     960    1023 .. 0.87
   8 ?    4.7   0.2     0.027        30      18      50 ..    1055    1091 ..    1045    1093 .. 0.74
   9 ?    4.3   0.0     0.035        39      39      54 ..    1107    1122 ..    1098    1125 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.7
       Big_1   8 tltatvkDangnp 20 
                 t++ +++D +gn 
  EHT99609.1 499 TVSGVAVDTKGNR 511
                 4555667777764 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0001
       Big_1   1 AdGvdtntltatvkDangnpvagatVtfsvsggals...assgtTdanGkatvtlts.tkagtvt 61 
                 AdG++t +lt t++D+n+++v      +s  +++l     s  t  + G++tvt+t  t  +tvt
  EHT99609.1 542 ADGKSTQVLTLTLRDENNQAVDMDVKDISLKNSTLKsaaVSALTRKSAGVYTVTVTAgTDNETVT 606
                 9********************999999999997777785666667899*******9514555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.5
       Big_1   6 tntltatvkDangnpvagatVtfsvsggalsassgtTd 43 
                   t+t t    +g  ++ a Vt+s++  + ++ss  Td
  EHT99609.1 602 NETVTLTPS-VSGVTLSPARVTISSTTPVQAQSSISTD 638
                 555555554.4566666677777777766666776666 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 6.1e-05
       Big_1   8 tltatvkDangnpvagatVtfsvsg...gals.....assgtTdanGkatvtltstkagt 59 
                 t+++t+kDa g +v gat ++++++   +  +      ss + + +G++t t t   ag+
  EHT99609.1 649 TVKVTLKDAAGDAVTGATASLTTDAvkvA--NatlkaGSSWKDNGDGTYTGTYTAGAAGD 706
                 99***********************7542..25689888999999*********999997 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 6.1e-05
       Big_1   8 tltatvkDangnpvagatVtfsvsg...gals.....assgtTdanGkatvtltstkagt 59 
                 t+++t+kDa g +v gat ++++++   +  +      ss + + +G++t t t   ag+
  EHT99609.1 754 TVKVTLKDAAGDAVTGATASLTTDAvkvA--NatlkaGSSWKDNGDGTYTGTYTAGAAGD 811
                 99***********************7542..25689888999999*********999997 PP

  == domain 6  score: 13.2 bits;  conditional E-value: 6.1e-05
       Big_1   8 tltatvkDangnpvagatVtfsvsg...gals.....assgtTdanGkatvtltstkagt 59 
                 t+++t+kDa g +v gat ++++++   +  +      ss + + +G++t t t   ag+
  EHT99609.1 859 TVKVTLKDAAGDAVTGATASLTTDAvkvA--NatlkaGSSWKDNGDGTYTGTYTAGAAGD 916
                 99***********************7542..25689888999999*********999997 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 6.1e-05
       Big_1    8 tltatvkDangnpvagatVtfsvsg...gals.....assgtTdanGkatvtltstkagt 59  
                  t+++t+kDa g +v gat ++++++   +  +      ss + + +G++t t t   ag+
  EHT99609.1  964 TVKVTLKDAAGDAVTGATASLTTDAvkvA--NatlkaGSSWKDNGDGTYTGTYTAGAAGD 1021
                  99***********************7542..25689888999999*********999997 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.027
       Big_1   18 gnpvagatVtfsvsg.gals...assgtTdanGkatv 50  
                  g++  g ++t++v+   + s   +  ++Td +Gka++
  EHT99609.1 1055 GKVKVGDNITLTVNYvPNSSlsfSIDSVTDRQGKART 1091
                  66666788888888863333469999********987 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.035
       Big_1   39 sgtTdanGkatvtlts 54  
                  +g Td+nGk  vtlt+
  EHT99609.1 1107 KGSTDENGKLAVTLTD 1122
                  789***********96 PP

>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.016        18      34      46 ..     588     600 ..     572     603 .. 0.82
   2 ?    0.3   2.6      0.74   8.3e+02      14      47 ..     612     657 ..     604     659 .. 0.69
   3 !   11.1   1.2   0.00032      0.36      19      46 ..     689     716 ..     677     719 .. 0.85
   4 !   11.1   1.2   0.00032      0.36      19      46 ..     794     821 ..     782     824 .. 0.85
   5 !   11.1   1.2   0.00032      0.36      19      46 ..     899     926 ..     887     929 .. 0.85
   6 !   11.1   1.2   0.00032      0.36      19      46 ..    1004    1031 ..     992    1034 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
      He_PIG  34 apGsytftVtatd 46 
                  +G+yt+tVta +
  EHT99609.1 588 SAGVYTVTVTAGT 600
                 46********975 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.74
      He_PIG  14 sGLtLdsstGtitGt.pdqtvap............G.sytftVtatdg 47 
                 sG tL+++  ti+ t p q+  +            G   t+ Vt  d+
  EHT99609.1 612 SGVTLSPARVTISSTtPVQA--QssistdktsyvsGaDMTVKVTLKDA 657
                 89***********9965554..32466666666665566666666665 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00032
      He_PIG  19 dsstGtitGtpdqtvapG.sytftVtatd 46 
                 d+++Gt+tGt + + a+G s+  tV  td
  EHT99609.1 689 DNGDGTYTGTYTAG-AAGdSLKATVQLTD 716
                 89************.6777*********8 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00032
      He_PIG  19 dsstGtitGtpdqtvapG.sytftVtatd 46 
                 d+++Gt+tGt + + a+G s+  tV  td
  EHT99609.1 794 DNGDGTYTGTYTAG-AAGdSLKATVQLTD 821
                 89************.6777*********8 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00032
      He_PIG  19 dsstGtitGtpdqtvapG.sytftVtatd 46 
                 d+++Gt+tGt + + a+G s+  tV  td
  EHT99609.1 899 DNGDGTYTGTYTAG-AAGdSLKATVQLTD 926
                 89************.6777*********8 PP

  == domain 6  score: 11.1 bits;  conditional E-value: 0.00032
      He_PIG   19 dsstGtitGtpdqtvapG.sytftVtatd 46  
                  d+++Gt+tGt + + a+G s+  tV  td
  EHT99609.1 1004 DNGDGTYTGTYTAG-AAGdSLKATVQLTD 1031
                  89************.6777*********8 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.4     0.009        10      88     129 ..     625     668 ..     620     671 .. 0.83
   2 !    6.5   0.3    0.0076       8.5      83     129 ..     725     773 ..     703     776 .. 0.77
   3 !    6.5   0.3    0.0076       8.5      83     129 ..     830     878 ..     808     881 .. 0.77
   4 !    6.5   0.3    0.0076       8.5      83     129 ..     935     983 ..     913     986 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.009
                 --S-EEEEEE-TTS-T..T--EEEEEEEEEEETTE.EEEEEEEE CS
     DUF4442  88 atgdltavaelepedv..gekeelvvevevrdekgeevvraeit 129
                 +t+ ++a+ +++ ++    ++ +++v+v+++d++g+ v+ a++ 
  EHT99609.1 625 STTPVQAQSSISTDKTsyVSGADMTVKVTLKDAAGDAVTGATAS 668
                 689999999999865544779**************999887765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0076
                 EE-S---S-EEEEEE-TTS-T..T--EEEEEEEEEEETTE.EEEEEEEE CS
     DUF4442  83 dYlakatgdltavaelepedv..gekeelvvevevrdekgeevvraeit 129
                 +Y   a   ++a+ +++ ++    ++ +++v+v+++d++g+ v+ a++ 
  EHT99609.1 725 AYAITAGAPVQAQSSISTDKTsyVSGADMTVKVTLKDAAGDAVTGATAS 773
                 56677777888888888755545779**************999887765 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0076
                 EE-S---S-EEEEEE-TTS-T..T--EEEEEEEEEEETTE.EEEEEEEE CS
     DUF4442  83 dYlakatgdltavaelepedv..gekeelvvevevrdekgeevvraeit 129
                 +Y   a   ++a+ +++ ++    ++ +++v+v+++d++g+ v+ a++ 
  EHT99609.1 830 AYAITAGAPVQAQSSISTDKTsyVSGADMTVKVTLKDAAGDAVTGATAS 878
                 56677777888888888755545779**************999887765 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0076
                 EE-S---S-EEEEEE-TTS-T..T--EEEEEEEEEEETTE.EEEEEEEE CS
     DUF4442  83 dYlakatgdltavaelepedv..gekeelvvevevrdekgeevvraeit 129
                 +Y   a   ++a+ +++ ++    ++ +++v+v+++d++g+ v+ a++ 
  EHT99609.1 935 AYAITAGAPVQAQSSISTDKTsyVSGADMTVKVTLKDAAGDAVTGATAS 983
                 56677777888888888755545779**************999887765 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05     0.012       1      44 []      56     103 ..      56     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                 EEE-TT--HHHHHHHCTCHHHHHHHHC.......TCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaN.......nlsspdkifpGqkLkiP 44 
                 Yt   G+T  s+Ak++++t+ +l+e N       +l++   ++pG++  +P
  EHT99609.1  56 YTLGAGETAASVAKKFHLTLGQLREINefrtfahGLNG---LRPGDEVDVP 103
                 89999**********************77777766666...8888877666 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.15   1.7e+02      13      25 ..     638     649 ..     635     649 .. 0.85
   2 ?    2.6   0.0      0.15   1.7e+02      13      25 ..     743     754 ..     740     754 .. 0.85
   3 ?    2.6   0.0      0.15   1.7e+02      13      25 ..     848     859 ..     845     859 .. 0.85
   4 ?    2.6   0.0      0.15   1.7e+02      13      25 ..     953     964 ..     950     964 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
                 TTTEEEEE---SS CS
        PLDc  13 DdrvafvGgaNLc 25 
                 D++ ++v+ga+++
  EHT99609.1 638 DKT-SYVSGADMT 649
                 555.*******97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
                 TTTEEEEE---SS CS
        PLDc  13 DdrvafvGgaNLc 25 
                 D++ ++v+ga+++
  EHT99609.1 743 DKT-SYVSGADMT 754
                 555.*******97 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
                 TTTEEEEE---SS CS
        PLDc  13 DdrvafvGgaNLc 25 
                 D++ ++v+ga+++
  EHT99609.1 848 DKT-SYVSGADMT 859
                 555.*******97 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.15
                 TTTEEEEE---SS CS
        PLDc  13 DdrvafvGgaNLc 25 
                 D++ ++v+ga+++
  EHT99609.1 953 DKT-SYVSGADMT 964
                 555.*******97 PP

>> PurS  Phosphoribosylformylglycinamidine (FGAM) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.8   6.5e+03      39      61 ..     548     570 ..     545     572 .. 0.84
   2 ?    3.6   0.1     0.066        74       7      33 ..     649     675 ..     647     681 .. 0.79
   3 ?    3.6   0.1     0.066        74       7      33 ..     754     780 ..     752     786 .. 0.79
   4 ?    3.6   0.1     0.066        74       7      33 ..     859     885 ..     857     891 .. 0.79
   5 ?    3.6   0.1     0.066        74       7      33 ..     964     990 ..     962     996 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.8
                 EEEEEEEE-SSHHHHHHHHHHHH CS
        PurS  39 kyieleleaedeeeaeeeveemc 61 
                 ++++l+l++e++++++ +v++++
  EHT99609.1 548 QVLTLTLRDENNQAVDMDVKDIS 570
                 68999*****9999999999875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.066
                 EE-TTS--HHHHHHHHHHHHTTHTTEE CS
        PurS   7 tlKkgvlDpqGkavkkalkslgyeeve 33 
                 t+K +++D+ G av++a  sl  + v+
  EHT99609.1 649 TVKVTLKDAAGDAVTGATASLTTDAVK 675
                 4555566**************888775 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.066
                 EE-TTS--HHHHHHHHHHHHTTHTTEE CS
        PurS   7 tlKkgvlDpqGkavkkalkslgyeeve 33 
                 t+K +++D+ G av++a  sl  + v+
  EHT99609.1 754 TVKVTLKDAAGDAVTGATASLTTDAVK 780
                 4555566**************888775 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.066
                 EE-TTS--HHHHHHHHHHHHTTHTTEE CS
        PurS   7 tlKkgvlDpqGkavkkalkslgyeeve 33 
                 t+K +++D+ G av++a  sl  + v+
  EHT99609.1 859 TVKVTLKDAAGDAVTGATASLTTDAVK 885
                 4555566**************888775 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.066
                 EE-TTS--HHHHHHHHHHHHTTHTTEE CS
        PurS   7 tlKkgvlDpqGkavkkalkslgyeeve 33 
                 t+K +++D+ G av++a  sl  + v+
  EHT99609.1 964 TVKVTLKDAAGDAVTGATASLTTDAVK 990
                 4555566**************888775 PP

>> ZirS_C  Zinc-regulated secreted antivirulence protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.7   1.9e+03      66     129 ..     499     566 ..     478     573 .. 0.60
   2 ?    9.2   3.1   0.00074      0.83      25     116 ..     606     700 ..     587     716 .. 0.81
   3 ?    6.2   0.9    0.0062       6.9      45     116 ..     733     805 ..     718     826 .. 0.84
   4 ?    6.2   0.8    0.0063       7.1      45     116 ..     838     910 ..     823     926 .. 0.84
   5 ?    6.1   0.9    0.0066       7.4      45     116 ..     943    1015 ..     928    1030 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
                 EEEEE-BBTTS-B------B--EE-.S-SSSEEEE---EE-S.SSSEEEEEEEE..ESS---EEEEEE CS
      ZirS_C  66 tittlvkdvdgnpvnevminkavar.enlkglwdigplkkev.vpgkytqvity..lgnsserldvey 129
                 t++ +  d  gn  +    +++v   e  k    + p      + gk tqv+t   + ++++ +d++ 
  EHT99609.1 499 TVSGVAVDTKGNRSERSDTQVTVQApEVNKQHSTFTPASSALpADGKSTQVLTLtlRDENNQAVDMDV 566
                 55556666666666655555555330333444455565544325699999986421666677777665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00074
                 -----------SSSS.--.---B-GGG-EEE-----B-TT-EEEEEEE-BBTTS-B------B--E.E-S-SSSEEEE---EE-SSSSEEEEEEE CS
      ZirS_C  25 tpvpsvsefqyiete.ti.sntpspdltlisidkavlspgesatittlvkdvdgnpvnevminkav.arenlkglwdigplkkevvpgkytqvit 116
                 t  psvs +    ++ ti s tp    + is dk+    g   t+   +kd  g+ v       ++ a + ++     g   k+++ g yt   t
  EHT99609.1 606 TLTPSVSGVTLSPARvTIsSTTPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTdAVKVANATLKAGSSWKDNGDGTYTGTYT 700
                 556888877766543255256899999*******************************99998776378889999***************98765 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0062
                 B-GGG-EEE-----B-TT-EEEEEEE-BBTTS-B------B--E.E-S-SSSEEEE---EE-SSSSEEEEEEE CS
      ZirS_C  45 pspdltlisidkavlspgesatittlvkdvdgnpvnevminkav.arenlkglwdigplkkevvpgkytqvit 116
                 p    + is dk+    g   t+   +kd  g+ v       ++ a + ++     g   k+++ g yt   t
  EHT99609.1 733 PVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTdAVKVANATLKAGSSWKDNGDGTYTGTYT 805
                 5556677999**************************99988776378889999***************98766 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0063
                 B-GGG-EEE-----B-TT-EEEEEEE-BBTTS-B------B--E.E-S-SSSEEEE---EE-SSSSEEEEEEE CS
      ZirS_C  45 pspdltlisidkavlspgesatittlvkdvdgnpvnevminkav.arenlkglwdigplkkevvpgkytqvit 116
                 p    + is dk+    g   t+   +kd  g+ v       ++ a + ++     g   k+++ g yt   t
  EHT99609.1 838 PVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTdAVKVANATLKAGSSWKDNGDGTYTGTYT 910
                 5556677999**************************99988776378889999***************98665 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0066
                  B-GGG-EEE-----B-TT-EEEEEEE-BBTTS-B------B--E.E-S-SSSEEEE---EE-SSSSEEEEEEE CS
      ZirS_C   45 pspdltlisidkavlspgesatittlvkdvdgnpvnevminkav.arenlkglwdigplkkevvpgkytqvit 116 
                  p    + is dk+    g   t+   +kd  g+ v       ++ a + ++     g   k+++ g yt   t
  EHT99609.1  943 PVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLTTdAVKVANATLKAGSSWKDNGDGTYTGTYT 1015
                  5556677999**************************99988776378889999***************98665 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.3    0.0027         3     222     399 ..     496     674 ..     485     691 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
    Macoilin 222 aakelvevd..pvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvks 318
                  +    +v+  +v +++n +++++++ +++ pe+++++++ + +ss   +  k ++  ++  + ++++ ++  +k   l++s+ ++ + + l+++s+  
  EHT99609.1 496 NTY---TVSgvAVDTKGNRSERSDTQVTVQAPEVNKQHSTFTPASSALPADGKSTQVLTLTLRDENNQAVDMDVKDISLKNSTLKSAAVSALTRKSAGV 591
                 222...333114566788888999999***********9999888887776666667667777777777888888888989988898889999998888 PP

    Macoilin 319 kssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssa...alkdaaenslpnnqlskkdalv 399
                  + + ++ +  n+  + + s++ ++ s+++   ss  + +++ss + +k ++ +G   +   +lkdaa + ++ +++s   + v
  EHT99609.1 592 YTVTVTAGT-DNETVTLTPSVSGVTLSPARVTISSTTPVQAQSSISTDKTSYVSGADMTvkvTLKDAAGDAVTGATASLTTDAV 674
                 887777766.55555566677788889999999999999888888888888888876655568899999999888877544433 PP

>> Phage_tube  Phage tail tube protein FII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.5      0.16   1.8e+02      38     121 ..     589     669 ..     575     684 .. 0.80
   2 ?    5.6   0.5     0.011        12      41     122 ..     696     775 ..     688     789 .. 0.82
   3 ?    5.6   0.4      0.01        12      41     122 ..     801     880 ..     794     894 .. 0.82
   4 ?    5.5   0.5     0.011        12      41     122 ..     906     985 ..     899     999 .. 0.82
   5 ?    0.9   0.0      0.29   3.3e+02      81     126 ..    1023    1069 ..     996    1083 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
  Phage_tube  38 gGmagevevdlggelealeleiklggldeevlklflakgkavqlrfrgalqredtaeekavevvvrgrvkeidlGkakagekte 121
                 +G + +v v++g + e  +l+ +++g++ + +++     +++ +++++++ +++t+ ++   ++v++++k      +  ++ + 
  EHT99609.1 589 AG-VYTVTVTAGTDNETVTLTPSVSGVTLSPARVT--ISSTTPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASL 669
                 55.56889999999999999999999999999999..6678999999*******999999999999999887666555554444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
  Phage_tube  41 agevevdlggelealeleiklggldeevlklflakgkavqlrfrgalqredtaeekavevvvrgrvkeidlGkakagektet 122
                  g++ + + g  ++l+++++l+ +++++ + ++a + ++ +++++++ +++t+ ++   ++v++++k      +  ++ + t
  EHT99609.1 696 TGTYTAGAAG--DSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLT 775
                 5777777888..*****************9999999***************9999**********98876666555554444 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.01
  Phage_tube  41 agevevdlggelealeleiklggldeevlklflakgkavqlrfrgalqredtaeekavevvvrgrvkeidlGkakagektet 122
                  g++ + + g  ++l+++++l+ +++++ + ++a + ++ +++++++ +++t+ ++   ++v++++k      +  ++ + t
  EHT99609.1 801 TGTYTAGAAG--DSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLT 880
                 5677777788..*****************9999999***************9999**********98876666555554444 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.011
  Phage_tube  41 agevevdlggelealeleiklggldeevlklflakgkavqlrfrgalqredtaeekavevvvrgrvkeidlGkakagektet 122
                  g++ + + g  ++l+++++l+ +++++ + ++a + ++ +++++++ +++t+ ++   ++v++++k      +  ++ + t
  EHT99609.1 906 TGTYTAGAAG--DSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDKTSYVSGADMTVKVTLKDAAGDAVTGATASLT 985
                 5677777788..*****************9999999***************9999**********98876666555554444 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.29
  Phage_tube   81 lrfrgalqredtae.ekavevvvrgrvkeidlGkakagektetkvtl 126 
                  l+++ +l ++++++  +a+ ++    + ++++Gk+k g++ + +v +
  EHT99609.1 1023 LKATVQLTDWSSKAeSEAYAITAGTLTLSLSEGKVKVGDNITLTVNY 1069
                  55555666666665477788888888889**********99988876 PP

>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.0     0.026        29      23      94 ..     691     763 ..     682     791 .. 0.73
   2 ?    4.7   1.0     0.028        31      24      94 ..     797     868 ..     788     896 .. 0.73
   3 ?    4.7   1.1     0.028        31      23      94 ..     901     973 ..     892    1001 .. 0.73
   4 ?   -0.8   0.0       1.4   1.6e+03      24      51 ..    1007    1034 ..     999    1053 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.026
                 SS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHH...HHTTSBHHHHCCCCHHHHH CS
      NifU_N  23 dakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAsssllte...lvkgktleealkitnkeia 94 
                      +g++ a a GD ++ ++++ + + + e   +    ++  +A ss+ t+    v g ++   +k+t k++a
  EHT99609.1 691 GDGTYTGTYTAGAAGDSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDktsYVSGADMT--VKVTLKDAA 763
                 4457799******************************9999999***99987611155666554..445555554 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.028
                 S--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHH...HHTTSBHHHHCCCCHHHHH CS
      NifU_N  24 akvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAsssllte...lvkgktleealkitnkeia 94 
                     +g++ a a GD ++ ++++ + + + e   +    ++  +A ss+ t+    v g ++   +k+t k++a
  EHT99609.1 797 DGTYTGTYTAGAAGDSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDktsYVSGADMT--VKVTLKDAA 868
                 456799******************************9999999***99987611155666554..445555554 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.028
                 SS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHH...HHTTSBHHHHCCCCHHHHH CS
      NifU_N  23 dakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAsssllte...lvkgktleealkitnkeia 94 
                      +g++ a a GD ++ ++++ + + + e   +    ++  +A ss+ t+    v g ++   +k+t k++a
  EHT99609.1 901 GDGTYTGTYTAGAAGDSLKATVQLTDWSSKAESEAYAITAGAPVQAQSSISTDktsYVSGADMT--VKVTLKDAA 973
                 4457799******************************9999999***99987611155666554..445555554 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.4
                  S--EEEEEEETTTTEEEEEEEEEETTTT CS
      NifU_N   24 akvgvgevgapacGDavrLqikvdeetd 51  
                      +g++ a a GD ++ ++++ + + 
  EHT99609.1 1007 DGTYTGTYTAGAAGDSLKATVQLTDWSS 1034
                  4467999***********9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.86u 0.26s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 8765.87
//
Query:       EHT99610.1  [L=58]
Description: ISEhe3 ORFB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-13   48.6   2.6    7.8e-13   48.4   2.6    1.1  1  rve_2     Integrase core domain
    7.1e-05   22.5   0.1    8.5e-05   22.3   0.1    1.1  1  rve_3     Integrase core domain


Domain annotation for each model (and alignments):
>> rve_2  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   2.6   8.7e-17   7.8e-13       7      50 ..       2      50 ..       1      52 [. 0.94

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 8.7e-17
       rve_2  7 LKtElvygetfktleeleaaiedYIew.YNnkRlk....glsPvqYrnq 50
                LK+E + +++++t+ee+++ i+dYIe+ YN+kR++    ++sP +Y++q
  EHT99610.1  2 LKREWIKKKIYETREEARSDIFDYIEMfYNSKRRHgssnQMSPTEYEKQ 50
                9**************************77****998999********98 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   9.5e-09   8.5e-05      26      67 .]       2      44 ..       1      44 [. 0.94

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 9.5e-09
       rve_3 26 lrdellneelfrslaearekleawred.YNteRPHssLgykTP 67
                l++e+++++++++ +ear+ + +++e  YN++R+H s ++++P
  EHT99610.1  2 LKREWIKKKIYETREEARSDIFDYIEMfYNSKRRHGSSNQMSP 44
                79**********************99659********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 492.16
//
Query:       EHT99611.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99611.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99611.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99611.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99611.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99611.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99611.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT99611.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99611.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99611.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99611.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99611.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT99611.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99611.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99611.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT99611.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99611.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99611.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.32
# Mc/sec: 2892.30
//
Query:       EHT99612.1  [L=140]
Description: hypothetical protein CKS_1751 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0045   17.7   0.0     0.0079   16.9   0.0    1.5  1  RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like


Domain annotation for each model (and alignments):
>> RicinB_lectin_2  Ricin-type beta-trefoil lectin domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.4e-07    0.0079      36      70 ..      70     104 ..      23     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.4e-07
                      TEEEEEE-TTT-GGCEEEEECCESSEEEEEETTTT CS
  RicinB_lectin_2  36 ganvqqwtcsgaanqqWrledtgdgtyrivnkasg 70 
                         ++ ++ ++ ++ +W +++++dgt++i+nk+++
       EHT99612.1  70 LSLADKSKITDEDSALWLIDENSDGTVTIRNKKNP 104
                      445566677899*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1221.32
//
Query:       EHT99613.1  [L=260]
Description: N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.9   0.0    1.7e-22   80.2   0.0    1.3  1  Amidase_2     N-acetylmuramoyl-L-alanine amidase
    0.00033   20.8   0.0    0.00073   19.7   0.0    1.6  1  PG_binding_1  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   1.9e-26   1.7e-22       3     125 ..      19     161 ..      18     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.9e-26
                 ESEEEEEEEEBSS.-HHHHHHHHHHSHHHHTTTS.S-SEEE-SSSS............EEESS-TTCEESSSSS......EHCHHGEEEEEESSTTE.. CS
   Amidase_2   3 rpidfiviHhtagssaagalavaaaeyaastngsigyhylidkdGt............iyqlvdengrawHagd......kggNdnsigIElvgngd.. 81 
                 r+++f+v+H+ta + +a++++++a       +g +++hyl+ +  +            +++lvden+rawHag       +++Nd+ ig+E+v+  +  
  EHT99613.1  19 RRVRFLVMHYTAVD-FAASVQALAG------DGTVSAHYLVPDPDDktyisagfndmrVFNLVDENERAWHAGVsswagrSNLNDTAIGVEVVNLASdn 110
                 689*********96.7666655333......345679****54422357777777777*************999999999***************99** PP

                 ....EESCHHHHHHHHHHHHHHHHHHHH.TEEEGGGEEEHHHH...TB-TTC CS
   Amidase_2  82 ....gkeppteaqyealakLvaallkry.gippdrrvvgHsdi...rktdPg 125
                        p+++ q+ a+++L+  +l+ry +i+p + vvgHsdi   rk+dPg
  EHT99613.1 111 dgvfVFPPYNPVQIYAIKELAINILQRYpDISPVN-VVGHSDIapgRKSDPG 161
                 *******************************9877.*****999*******9 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   8.1e-08   0.00073      10      57 .]     203     249 ..     195     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.1e-08
                   HHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST.-SSSBSHHHHHHH CS
  PG_binding_1  10 ryLsrlGylsgpadgtfgpateeaVkefQqffgLp.vtGildpaTlaal 57 
                    +L+ +Gy+      t  ++++  V++fQ +f+ +  +Gi+d++T a+l
    EHT99613.1 203 ARLKTYGYD--VSGATTASGLQLLVRAFQLHFRQEnYDGIIDADTAAVL 249
                   79******6..4446788899999*****9999999*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 2457.12
//
Query:       EHT99614.1  [L=400]
Description: hypothetical protein CKS_1749 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-91  304.4   3.2    9.4e-91  304.1   3.2    1.0  1  GHL10      Glycosyl hydrolase-like 10
     0.0058   16.8   0.2        7.9    6.6   0.9    3.8  3  GHL6       Hypothetical glycosyl hydrolase 6
      0.006   15.6   0.0     0.0095   14.9   0.0    1.2  1  Melibiase  Melibiase


Domain annotation for each model (and alignments):
>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.1   3.2   1.6e-94   9.4e-91       1     310 [.       5     340 ..       5     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: 304.1 bits;  conditional E-value: 1.6e-94
       GHL10   1 elRgvWlanvdsvdll................dkvqkkeaikkLddlqlntvyvqvkndgtalypsavakwselktgkkgedpGrDvLaevideahkrn 83 
                 ++R+ W+++v ++d++                +k+  + +++++  +++n+v++qv + ++aly s++++ws+++tg+ g++pG D+La  +++ah rn
  EHT99614.1   5 KMRATWVSSVINLDWPsaysltilddterikrQKEELTSILDDIVAMNMNAVIFQVVPCADALYASDLLPWSKYLTGTLGKNPGFDPLAWAVEQAHARN 103
                 79*************************995555555555666666678*************************************************** PP

       GHL10  84 lkvlaWF...evglnak.....elselvkahPasltvqkrdevktsesaagerlwlnPliPevqdfitklvvevvkrYdvDgvqlDDyfylpesfGydl 174
                 ++++aW    ++++n++     el++ + +   s++  +++++++      +r++l+P+iPevq ++t +v+e+v rYdvDg+q+DDyfy +es+ + l
  EHT99614.1 104 IELHAWVnpyRISMNTRdatvdELNHSSPDSAPSVYRTHPEWTRVA----YNRFVLDPGIPEVQAWVTGVVEEIVTRYDVDGIQFDDYFY-YESADSPL 197
                 ******9999******9887777888888877889*9*******99....9***************************************.99****** PP

       GHL10 175 idvalYrqetkkealsnkeddlwidWRrdkisqlvkklnatikavkPnvkisvsPagvw.n..............laydeflaDtrrWiekgvideivl 258
                  d a++++++  + ++ k d     WRr+++  lv    ++ik++kP+v+++vsPagvw n               +yd+ +aDtr+W+ +g+id+i++
  EHT99614.1 198 DDDATWQKYG--QGFTRKGD-----WRRNNTYSLVDACHRRIKTIKPGVRFGVSPAGVWrNrvddplgsdtqagaPNYDSAYADTRKWVLDGIIDYIAP 289
                 **********..69*****9.....**********************************98*************99*********************** PP

       GHL10 259 qvYreklaafaaeldvlakreskevkptavglliGlaakkvpeplkidaqwv 310
                 qvY++ +a+  a++dv   +++++v+ t + l+iG+a +kv++p+  +++w+
  EHT99614.1 290 QVYWP-FARKVARYDVITRWWADTVRGTGTALYIGMALYKVGTPSAAEPDWT 340
                 *****.*********************************************6 PP

>> GHL6  Hypothetical glycosyl hydrolase 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.056   3.3e+02       5      64 ..      44     108 ..      40     120 .. 0.76
   2 !    6.6   0.9    0.0013       7.9      75     136 ..     138     185 ..     127     186 .. 0.62
   3 ?   -0.8   0.0      0.25   1.5e+03      38      58 ..     211     231 ..     202     247 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.056
        GHL6   5 lveelkeagadtlvifardaggvvyYrtkldfvtehpklkr........dllkelvkachregikvvv 64 
                 +++++++++ +++++   ++   + Y ++l   +  ++l++        d l+ +v+ +h+++i   +
  EHT99614.1  44 ILDDIVAMNMNAVIF-QVVPCADALYASDL--LPWSKYLTGtlgknpgfDPLAWAVEQAHARNIELHA 108
                 678889999998777.55577799999997..566666654455678889999999999999997765 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0013
        GHL6  75 iyeqhpeWaavkenGeviiiegervgepgwptlCinsgyqeklaeeleealkrldlDGifld 136
                 +y++hpeW  v  n +++        +pg p      + q  +  ++ee++ r+d+DGi +d
  EHT99614.1 138 VYRTHPEWTRVAYN-RFV-------LDPGIP------EVQAWVTGVVEEIVTRYDVDGIQFD 185
                 67777777766666.321.......111111......2344566778888888888888665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.25
        GHL6  38 tehpklkrdllkelvkachre 58 
                 t+    +r+    lv+achr+
  EHT99614.1 211 TRKGDWRRNNTYSLVDACHRR 231
                 55566677777889*****97 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.6e-06    0.0095     106     191 ..      92     186 ..      85     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-06
   Melibiase 106 leelakevhekglkfGlWvePemvsads......elyrehPdwvlqvedrsrtesr...nqlvLdlsrpdvvdyiievldnllkeaqidyvkWDm 191
                 l+  ++++h++++++  Wv+P  +s+++      el ++ Pd + +v   ++  +r   n++vLd + p+v++ ++ v++++++  ++d +++D 
  EHT99614.1  92 LAWAVEQAHARNIELHAWVNPYRISMNTrdatvdELNHSSPDSAPSVYRTHPEWTRvayNRFVLDPGIPEVQAWVTGVVEEIVTRYDVDGIQFDD 186
                 55568999**************999886333343689999**99887777666655444899*****************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2832.66
//
Query:       EHT99615.1  [L=327]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-27   97.0   1.1    2.2e-27   96.0   1.1    1.6  1  Resolvase  Resolvase, N terminal domain
  ------ inclusion threshold ------
      0.016   15.3   0.6      0.072   13.2   0.0    2.3  2  HTH_7      Helix-turn-helix domain of resolvase
      0.017   14.9   0.1       0.05   13.4   0.1    1.7  1  HTH_23     Homeodomain-like domain
        1.1    9.3   5.8        1.8    8.7   0.2    2.5  2  HTH_3      Helix-turn-helix


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   1.1   4.9e-31   2.2e-27       2     146 .]       6     160 ..       5     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 4.9e-31
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvs 99 
                  +Y+R St+eqd   +r +++l ++a+e+++ i + + ++  SGa+leRp+l rll++ r+  gdvl++e++dRL+R    ++ +l   +r++gv +v 
  EHT99615.1   6 RAYLRASTSEQD--AQRARDMLDRFAREHNVIICNYYAEN-ESGARLERPELFRLLNDSRP--GDVLLIEDVDRLSRLkGDEWEKLKAIIRQRGVWVVA 99 
                 58**********..***************88899999999.********************..***************9999***************** PP

                 SS..............SS----HHHH.......HHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 100 ldeg............idtstpmgrl.......llqilaalaeferelirertkeglaaakakGkk 146
                 ++ +            +  ++    +       ll++laa+a+ + e++rer+++g+ +aka+Gk+
  EHT99615.1 100 VNVPttwqhlspraneF--DSR---MfgaindmLLDMLAAIARRDYEQRRERQQQGITKAKAAGKY 160
                 **754676654444331..222...13333555*******************************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.52   2.3e+03      10      26 ..     139     155 ..     134     160 .. 0.79
   2 ?   13.2   0.0   1.6e-05     0.072       5      38 ..     164     197 ..     161     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.52
                 HHGGGGSSTTTT--STT CS
       HTH_7  10 dinrvvkLleeGisisk 26 
                 d+++ +++ ++Gi+++k
  EHT99615.1 139 DYEQRRERQQQGITKAK 155
                 78888999999*99887 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
                 SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   5 klskndinrvvkLleeGisiskIAkevnisRsTv 38 
                  ++k +++ + +Ll +G+s +++ k  ++sRsT+
  EHT99615.1 164 QVNKPRYDAINRLLLSGSSWTQVQKTIGCSRSTI 197
                 5677799**************************7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.1e-05      0.05      12      39 ..     175     202 ..     169     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
      HTH_23  12 lllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +ll+ G s++++ +  g+sr+T++  +k
  EHT99615.1 175 RLLLSGSSWTQVQKTIGCSRSTISSAIK 202
                 46667******************98877 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.5     0.048   2.1e+02       2      16 ..     143     157 ..     142     164 .. 0.82
   2 ?    8.7   0.2   0.00041       1.8       8      28 ..     179     199 ..     174     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.048
                 HHHHHHTTHHHHHHH CS
       HTH_3   2 kelRkqlglsqeeLA 16 
                 ++ R+q+g++++++A
  EHT99615.1 143 RRERQQQGITKAKAA 157
                 67899******6665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00041
                 TTHHHHHHHHHHTSSHHHHHH CS
       HTH_3   8 lglsqeeLAeklGvsrstisr 28 
                  g s +++++ +G srstis 
  EHT99615.1 179 SGSSWTQVQKTIGCSRSTISS 199
                 5668889************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2333.38
//
Query:       EHT99616.1  [L=288]
Description: replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-27   96.4   0.1    2.3e-27   96.0   0.1    1.2  1  IncFII_repA  IncFII RepA protein family


Domain annotation for each model (and alignments):
>> IncFII_repA  IncFII RepA protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.1   1.3e-31   2.3e-27       5     241 ..      14     243 ..      10     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.3e-31
  IncFII_repA   5 yvknpsPlftpPkeekkrPafikyalkaakekdvarsellyilklkdvktglilkrerrlnehraralralveallyhlniasglveasveqlsDeCG 102
                   vknp+P ftp + +k    f + ++ +a+    +r +         + + ++ kr+r     r ra++al++ l  h++  +++v+ s+ +l+ eCG
   EHT99616.1  14 QVKNPNPEFTPREGKKTL-PFCRKLMAKAEGF-TSRFDFSMH----VAFVRSLGKRHRMPPLLRRRAIDALLQGLCFHYDPLANRVQRSITNLAIECG 105
                  59*******966655555.5888888888765.566665433....3467888899999999************************************ PP

  IncFII_repA 103 LstvskaGnksitrasrlitefleplGlvkCekvWDkilesyiPkiitlteLffvLidvskeklksakkqqlgWinkkLrekGekpitlvearrrake 200
                  L+t sk+Gn sitra+r++ +f+ +lGl++ +  +D  +++ iP  it t+ +f  +dvs   +  a++ +++W+n++  ++ +  + + e   +a  
   EHT99616.1 106 LATESKSGNLSITRATRAL-KFMAELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVVAARRSRVEWENQQREKQRLPRLDMDELIAKAWR 202
                  ******************9.58********************************************************99999999999998888877 PP

  IncFII_repA 201 khikkaleyrkkkhalkkkkrkarkleeldekearktilkd 241
                     ++  +y+ +++    k+ +ar+ ++ + +++   + ++
   EHT99616.1 203 FARERFRSYQSERKQHGLKRARARRDADRNRRDIETIVKRQ 243
                  77777777777777777777777776655555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2156.05
//
Query:       EHT99617.1  [L=101]
Description: hypothetical protein CKS_1746 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-15   56.4   0.2    3.7e-15   56.3   0.2    1.0  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par
  ------ inclusion threshold ------
      0.015   15.8   3.1      0.027   14.9   3.1    1.3  1  PP28        Casein kinase substrate phosphoprotein PP28


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.2   4.2e-19   3.7e-15       1      89 [.       4      96 ..       4      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 4.2e-19
                EEEEHHHHHHHHHHHHHHHCC-H.HHHHHHHHHHHHHHHHHHHTTTSEECTSTC.CTTEEEEEEC..TEEEEEEEETSTTEEEEEEEEEHHHH CS
  ParE_toxin  1 vrltprAlkdlkkiadyiardgp.aakrfldaleealellaenpalgrprrelg.lkglrririg..dyriiYriddeelvvvilrvlhrsed 89
                v+++++A+kdl+++  ++ + ++ aa+++ + + + ++ll++ p  grp ++l   ++++++ +g  +y+ +Yr+d+    vvil ++h++e+
  EHT99617.1  4 VIISEQARKDLQRLQLFLKKKNAlAARKAAEIIIRGIRLLETTPGVGRPVEHLPlAYHELVVEFGssGYVMLYRFDELAGRVVILTIRHQKEA 96
                799****************88888*************************7777687799999999**********76667777********96 PP

>> PP28  Casein kinase substrate phosphoprotein PP28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   3.1     3e-06     0.027      56      82 ..       8      34 ..       6      35 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-06
        PP28 56 eeakaDLaRLalireqReeaaakreae 82
                e+a++DL RL+l  +++++ aa+++ae
  EHT99617.1  8 EQARKDLQRLQLFLKKKNALAARKAAE 34
                8***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 746.41
//
Query:       EHT99618.1  [L=459]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.4e-147  490.8   0.0   2.8e-147  490.6   0.0    1.0  1  DDE_Tnp_Tn3  Tn3 transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_Tn3  Tn3 transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.6   0.0  1.6e-151  2.8e-147       1     389 []      44     433 ..      44     433 .. 1.00

  Alignments for each domain:
  == domain 1  score: 490.6 bits;  conditional E-value: 1.6e-151
  DDE_Tnp_Tn3   1 DlLlevdawtgfleafthlsgreakskdekerllaallaeGtnlGlkkmar.aipglsrdqLatvnrryireetlraAnaaivnaqaklplaklWgdg 97 
                  +lLle++a+tgf ++f h+s+ +a+ +d + ++ a+l+ae++n+Gl++++r ++++l+r++L++++++y+r+et+++Ana++v++qa+lpla++Wg+g
   EHT99618.1  44 ELLLEINAHTGFADEFFHASEASARVNDLPVSISAVLMAEACNIGLEPLIRsNVQALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQVWGGG 141
                  69*************************************************99********************************************* PP

  DDE_Tnp_Tn3  98 ttaSsDgqkfevseqnllaevnpryfgkekGvtiythvsdqyialysqvisaterealyvldgllrnesdlepeelatDthGysdvvFallhllgfkl 195
                  ++aS+Dg++f +++++++a +n +yfg+++G+t+y++ sdqy++++  vi++t r++++vl+gll++e++l+p+e++tDt+G+sd+vF+l++llg+++
   EHT99618.1 142 EVASVDGMRFVTPVRTINAGPNHKYFGHNRGITWYNFMSDQYSGFHGIVIPGTLRDSIFVLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQF 239
                  ************************************************************************************************** PP

  DDE_Tnp_Tn3 196 aPRlrdlkdqklyrpdakadykeldalltkkinldlIeehwddllrlaaSiklgkvsastilrkLssysrqnplykAlrelGriikTlfllrYlddee 293
                  +PRl+d ++  ++r+d++ady+ l+++++++ + ++I+ +wd+++r a S+ lgkv+as ++r L +++r+  l +A+ e+Gri kTl+ll+Y+dde+
   EHT99618.1 240 SPRLADAGSSVFWRMDNDADYGVLNDIARGQSDPRKIALQWDEMIRAAGSLTLGKVQASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDED 337
                  ************************************************************************************************** PP

  DDE_Tnp_Tn3 294 lRreiqaqlnkgEsrhalaraiffgkegeirerrreeqekrlsalrLvanaivlwNtlylsealeelraegeevkdellarlsplawehinllGeY 389
                  +Rr+i +qln+gEsrha+arai++g++geir+r+ ++qe++l+al+Lv+na+vlwNt+y+++al++lra+ge+++de++arlspl + hin+lG+Y
   EHT99618.1 338 YRRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGALGLVTNAVVLWNTIYMQAALDHLRAQGEALNDEDIARLSPLCHGHINMLGHY 433
                  ***********************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3906.87
//
Query:       EHT99619.1  [L=100]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 819.45
//
Query:       EHT99620.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99620.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99620.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99620.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99620.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 915.25
//
Query:       EHT99621.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99621.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1052.43
//
Query:       EHT99622.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-97  326.7   3.8    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      3e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   8.7    1.9e-10   41.4   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.023   14.5   5.9      0.036   13.8   5.9    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.028   13.6   1.5      0.054   12.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   12.9   6.3      0.048   12.2   6.3    1.3  1  FUSC             Fusaric acid resistance protein family
      0.032   14.6   4.4       0.12   12.8   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.044   13.0   0.5      0.074   12.2   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.096   12.2   2.0       0.12   11.9   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.14   11.9   9.9       0.23   11.2   9.9    1.2  1  ERM              Ezrin/radixin/moesin family
       0.17   11.8   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.19   12.1   3.0       0.49   10.7   3.0    1.7  1  HalX             HalX domain
       0.29   10.8   2.3        1.1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
          1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        4.2    6.9   7.3        9.3    5.7   7.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        6.1    7.5   8.3        8.1    7.1   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4      0.13   1.3e+02     167     217 ..      34      87 ..      22     121 .. 0.45
   2 !  325.1   0.0    4e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeq 217
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+
    EHT99622.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEE 87 
                   45566566667777776666643113332233333333333333333322.1111 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99622.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99622.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99622.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.4e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.4e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99622.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.6e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99622.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.7     2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99622.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.9   3.9e-05     0.036     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99622.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.5   5.7e-05     0.054      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99622.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.3   5.1e-05     0.048     213     294 ..       4      89 ..       1     120 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99622.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   0.00012      0.12      22      55 ..      23      56 ..      12      71 .. 0.82
   2 ?    2.8   0.5      0.16   1.5e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHT99622.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888899************************985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99622.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   7.8e-05     0.074      24      76 ..      37      91 ..      33     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99622.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEV 91
                578***************8777443335566677788888999********9986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00013      0.12     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.3   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99622.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   3344444555555556666666778999999999998888665543889999999****9999************999844.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99622.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.9   0.00024      0.23      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99622.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.1e+03      26      54 ..      16      44 ..       9      62 .. 0.79
   2 ?    3.1   0.0     0.092        87      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.022        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99622.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.092
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT99622.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99622.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.0   0.00052      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT99622.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0011       1.1     152     191 ..      17      56 ..       5      65 .. 0.86
   2 ?    1.7   0.1      0.19   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHT99622.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99622.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.5   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99622.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99622.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4   0.00097      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00097
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99622.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0042         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.085        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99622.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.085
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99622.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.3    0.0098       9.3      70     152 ..      13      97 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99622.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666677777888888888888888885542278888999************************98766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0086       8.1      22      53 ..      12      43 ..       8      50 .. 0.87
   2 ?    3.2   0.8      0.15   1.4e+02      34      57 ..      68      91 ..      62     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99622.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677899********************887665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99622.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                     1020  (0.0568911); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 3844.60
//
Query:       EHT99623.1  [L=1020]
Description: putative aminoglycoside efflux pump [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1309.4   5.9          0 1309.2   5.9    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    4.3e-11   42.3  31.4    2.9e-07   29.7  10.0    3.2  3  MMPL       MMPL family
     0.0066   15.9  25.3      0.013   14.9   1.9    2.3  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1309.2   5.9         0         0      19    1021 .]       1    1009 [.       1    1009 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1309.2 bits;  conditional E-value: 0
                  HHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTTS-HHHHHHHHHHHHHHHG CS
    ACR_tran   19 illlGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedgtdidiArqqvqnrlqeak 114 
                  ++l+G+l+i+slPv+++P++app+v+++++ypGas++++e++vtq++Eq+++g+d+l+y+sS+S ++g+++itltF  gt++d+Arqqvqn+l++a 
  EHT99623.1    1 MCLCGTLAIISLPVEQYPDLAPPNVRITATYPGASAQTLENTVTQVIEQNMTGIDNLMYMSSNSsNTGQAQITLTFTAGTNPDEARQQVQNQLKAAL 97  
                  789*************************************************************99******************************* PP

                  GGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHCTT--HHHHHHHHHHHS CS
    ACR_tran  115 nkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklaklgltltdvvsalkeqn 211 
                  ++LP+ vq +g++++kt++s+il++a++s+dgs++k++++d++++ni+d++sr++GVg+v+ +G  ++a+riwldp kl ++ lt +dvv+a+k+qn
  EHT99623.1   98 RQLPQPVQSQGVTVNKTGDSNILMVAFVSTDGSMNKQDIADYVASNIQDPISRIDGVGEVDAYG-TQYAMRIWLDPYKLTAYALTTDDVVNAIKSQN 193 
                  ****************************************************************.******************************** PP

                  SB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSBHHHHHHHHHH CS
    ACR_tran  212 vnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpganaievakavke 301 
                   +va Gq+      ++q  +++++aq+ lq++++++ i++k n dgs v l+DvA+V+lgae+++  +++ng+ a++l++k ++gan++++ k v++
  EHT99623.1  194 TQVAVGQVgglpavNNQALNATVNAQSMLQTPDQFKAITLKnNPDGSVVTLGDVATVALGAEKYDSLSRYNGQAASGLGIKLASGANEMNTDKLVRA 290 
                  *************99**************************999***************************************************** PP

                  HHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHH CS
    ACR_tran  302 kleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlv 398 
                  +l+eL++++P+g+e++++y++t+fv+asi + vktLleai+Lv+ v++lF+qn+ratlip+iavP++llgtf v+ a+g+s+N+lt+f++vlAiGl+
  EHT99623.1  291 RLDELSHYFPHGLEAKIAYETTPFVKASITDMVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCVIFAFGYSINTLTMFAMVLAIGLL 387 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHS---ST CS
    ACR_tran  399 vDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPalcallLkerke 495 
                  vDdAiVvvEn+er ++eeg +p++a++ksm++iqgalv+ialvl+avf+P++f+gG++G+++rqf++tiv+a++lsvlva++ltPalca+lLk+  +
  EHT99623.1  388 VDDAIVVVENVERIMSEEGISPRAATRKSMGQIQGALVGIALVLSAVFIPMAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLLKPIAK 484 
                  ************************************************************************************************* PP

                  T-CT...SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHHHHH.HHH CS
    ACR_tran  496 ekek...kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkqvek.ilk 588 
                  ++++   +ffr+fn  f++   +Y++ ++++l+   ++ll+++ +++++++lf+++p++flP+ed+g+++t+vqlp+g+s++qt++v+++vek +l+
  EHT99623.1  485 GEHHgerGFFRWFNYHFNRNADRYERGVARILHTGGRWLLLYVGIIGVMAFLFLHLPSSFLPQEDRGMILTQVQLPAGSSMDQTSAVVAKVEKyYLT 581 
                  9999999**************************************************************************************9888 PP

                  .TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSSHHHH CS
    ACR_tran  589 .ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrselqvklfgddlea 684 
                   ek++v svf++ G+ + g  +g+n a++fi+Lk++ +r++ + +++a+i+r+ k++k+i++a+v++++p+++++l+++sg+++e+q+ + g ++++
  EHT99623.1  582 kEKDNVLSVFSTIGSGPGG--NGQNVARLFIRLKDWGDRPGADRTSFAIIKRAGKAFKHINEAMVIASSPPAITGLGSSSGFDLEIQD-HGGIGHDK 675 
                  89*************9999..9******************************************************************.******** PP

                  HHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGSSSGGGGCCSEEE CS
    ACR_tran  685 LseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedlrsspedlkklkvr 781 
                  L+++++ ll ++ +   ls+vr+++ +d+pqlq++id++ka++lGvs+++indtl+ta+g+syvn f ++gr++kv+v++++ +r+ p+d++k++vr
  EHT99623.1  676 LMAMRDMLLDKASKDTLLSRVRHNGLDDSPQLQIDIDERKAQALGVSLDTINDTLATAWGSSYVNYFLDRGRVKKVYVQADAPYRMLPDDIDKWYVR 772 
                  ************************************************************************************************* PP

                  ETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH CS
    ACR_tran  782 nkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalalllvflv 878 
                  n++g+mvp+sa+a++++e+g++++er+ng++s++i g++aeg+s+++a++++ek+++   lp gv+++wtg+++qe+++++++++l+a++ll+vfl+
  EHT99623.1  773 NSSGTMVPFSAFATSRWETGSPRLERYNGYASLEIVGEAAEGVSSGTAMNEMEKLVES--LPLGVGFQWTGASYQERLSGSQAPALYAVSLLVVFLC 867 
                  **********************************************************..************************************* PP

                  HHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHHHHHH CS
    ACR_tran  879 LaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTalaail 975 
                  Laalyes+s+p++++l+vPl++vGal+a++ rgle++v++qvGl++++Gl++kNail+vefa+el+  +g +l e +l a+++RLrPiLMT+la+i+
  EHT99623.1  868 LAALYESWSIPFSVMLVVPLGVVGALIATWTRGLENDVYFQVGLLTVVGLSAKNAILIVEFANELNS-KGGELIESTLAASRQRLRPILMTSLAFIF 963 
                  *******************************************************************.5666************************* PP

                  HHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  976 GvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  GvlP+a+s+gaGs++q+ +g++v+gG++++t+L++l+vP+++vlv+
  EHT99623.1  964 GVLPMAISSGAGSGSQHSVGTGVMGGMISATLLAILFVPLFFVLVR 1009
                  *******************************************985 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.5    0.0089        53      78     134 ..      61     120 ..      29     137 .. 0.67
   2 !   29.7  10.0   4.9e-11   2.9e-07     134     305 ..     311     481 ..     239     507 .. 0.82
   3 !   20.0   6.8   4.6e-08   0.00027     140     310 ..     848    1016 ..     807    1019 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0089
        MMPL  78 aafvSkDgkaaralvtlegdpgsteadesvaairaaveear...pleglkvevtGpaatl 134
                 +   S+ g+a ++l  ++g   +++ ++  ++++aa+++++     +g++v+ tG + +l
  EHT99623.1  61 SSNSSNTGQAQITLTFTAGTNPDEARQQVQNQLKAALRQLPqpvQSQGVTVNKTGDSNIL 120
                 444455555544444445555555555555788888898888888999999999988665 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 4.9e-11
        MMPL 134 ladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRy.reela 231
                 ++++ +as  d+ ++ + ++++++ ++ + ++++ a l+p + v v ll ++ +  i+a+     ++ + +++++vl+i+  +D a+ +v    r  ++
  EHT99623.1 311 TTPFVKASITDMVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCV--IFAFGYS--IN-TLTMFAMVLAIGLLVDDAIVVVENVeRIMSE 404
                 5667779999999*******************************9999999998..6665533..33.445789****************998455778 PP

        MMPL 232 agedreeaviravastgkvvtaaGltvaiamlgLvvarl...pvlaqvGvaialGvlvdvlivlTllPAllvllGra 305
                 +g++ ++a  + ++++ ++ ++ +l++ + ++ +++       + +q+ v+i  +++++vl+++ l+PAl+++l + 
  EHT99623.1 405 EGISPRAATRKSMGQIQGALVGIALVLSAVFIPMAFFGGtvgAIYRQFSVTIVSAMILSVLVAMILTPALCATLLKP 481
                 99****************************9999997651115689*************************997555 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 4.6e-08
        MMPL  140 asdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedr 236 
                  +s +++  + +v+l+v+++ L+ +y S  +++ ++l+v ++++ al     +   l  +++ +v gll+v+  + ++  a+l+v    e   +g + 
  EHT99623.1  848 LSGSQAPALYAVSLLVVFLCLAALYESWSIPFSVMLVVPLGVVGALIA--TWTRGLENDVYFQV-GLLTVV--GLSAKNAILIVEFANELNSKGGEL 939 
                  56667778899*************************999998877655..99998888887665.566655..5566789*****99**999***** PP

        MMPL  237 eeaviravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakp 310 
                   e+   a ++  + +++  l +++ +l +++++    ++ ++vG+ +  G++ ++l+++ ++P + vl+ r+ + k+
  EHT99623.1  940 IESTLAASRQRLRPILMTSLAFIFGVLPMAISSgagSGSQHSVGTGVMGGMISATLLAILFVPLFFVLVRRRFPLKE 1016
                  *****************************9865333899999**************************999965554 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9  15.9    0.0013       7.6      38     185 ..     326     477 ..     312     480 .. 0.76
   2 !   14.9   1.9   2.1e-06     0.013      37     176 ..     857     998 ..     836    1010 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH..TT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHH CS
   SecD_SecF  38 lialvliliyvalrFewrvalaaiialvhDviitvgvlsl..lgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtLtr 134
                 l+  +l+++ v+  F +++    i +++  v+++ ++ ++  +g  ++  t+ a+   iG  v+d +vv + v+    +++  + + ++ +s+ q    
  EHT99623.1 326 LLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCVIfaFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERI-MSEEGISPRAATRKSMGQIQGA 423
                 3344555667777888888888888888888876555554116799***************************765.5668888899999999998876 PP

                 HHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHH CS
   SecD_SecF 135 tiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiaspllll 185
                  +   l++  v + + ++gg    + ++f+++++ ++i+ ++ ++ +  +l ++
  EHT99623.1 424 LVGIALVLSAVFIPMAFFGGtvgAIYRQFSVTIVSAMILSVLVAMILTPALCAT 477
                 666666666677789999987767789999999999999998888877777666 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHH CS
   SecD_SecF  37 llialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtLtr 134
                  +++l+++++ +a  +e w++++++++ +   v+ ++ +    g+e d+ + ++lLt++G S ++ +++ +   e   ++k  +l e +  +  q L  
  EHT99623.1 857 YAVSLLVVFLCLAALYEsWSIPFSVMLVVPLGVVGALIATWTRGLENDVYFQVGLLTVVGLSAKNAILIVEFANEL--NSKGGELIESTLAASRQRLRP 953
                 34567778888888887689999999989999988888888889**************************988887..556899999999999****** PP

                 HHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHH CS
   SecD_SecF 135 tiltslttllvvvallllgg...dslkdfalallvGlivgtyssi 176
                  ++tsl  ++ v+ + +  g   +s +++ + ++ G+i+ t+ +i
  EHT99623.1 954 ILMTSLAFIFGVLPMAISSGagsGSQHSVGTGVMGGMISATLLAI 998
                 *******99999999998764445555566666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.45
# Mc/sec: 6795.01
//
Query:       EHT99624.1  [L=52]
Description: hypothetical protein CKS_1739 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 437.60
//
Query:       EHT99625.1  [L=122]
Description: ArsC family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-14   51.5   0.0    1.2e-13   50.8   0.0    1.4  1  ArsC          ArsC family
     0.0098   16.1   0.0      0.013   15.7   0.0    1.3  1  Glutaredoxin  Glutaredoxin
  ------ inclusion threshold ------
       0.11   12.4   0.1        3.4    7.6   0.0    2.3  2  UBA_4         UBA-like domain
       0.16   11.3   0.0       0.29   10.5   0.0    1.4  1  Dehalogenase  Reductive dehalogenase subunit


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   2.7e-17   1.2e-13       2      61 ..       9     114 ..       8     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.7e-17
                 E-TT...........................................GCB-TTSHHHHHCT..CCCTTSBHHHHHHHHHH-GGGB-S-EEEESSE.EEE CS
                 xxxx...........................................xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        ArsC   2 gspn...........................................ellskrgttyreLn..ldkedlsedellelilenpsLirRPivvdgkr.lqi 54 
                 g++n                                           +ll++rgtt+r+L     +  ++++++ +l+l++p++i+RP++ + ++ l++
  EHT99625.1   9 GIKNcdtikkarrfleaagvdyrfhdyradgltdeqlqqfidalgyqDLLNTRGTTWRKLPesERDSITDAASAKALMLAQPAIIKRPVLRTADGtLLL 107
                 666666666677777777777778888888888888888888888889*************85566666999********************8887*** PP

                 SSSCCGG CS
                 xxxxxxx RF
        ArsC  55 Gfneeei 61 
                 Gf+e  +
  EHT99625.1 108 GFSETLY 114
                 **99766 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     3e-06     0.013       2      44 ..       6      48 ..       5      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3e-06
                  EEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHH CS
  Glutaredoxin  2 vlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkel 44
                  v+f+ ++C   kka+r+L+  gv+++++d  +d    e+l+++
    EHT99625.1  6 VMFGIKNCDTIKKARRFLEAAGVDYRFHDYRADGLTDEQLQQF 48
                  68999999999******************99998666666665 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00076       3.4      12      27 ..      12      28 ..       9      30 .. 0.84
   2 ?    2.3   0.1     0.032   1.4e+02       1      12 [.      42      53 ..      42      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00076
       UBA_4 12 Gade.ekArqlLeannW 27
                ++d+  kAr++Lea++ 
  EHT99625.1 12 NCDTiKKARRFLEAAGV 28
                687789********985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.032
       UBA_4  1 deliaqFqaiTG 12
                de+++qF++  G
  EHT99625.1 42 DEQLQQFIDALG 53
                89*****97665 PP

>> Dehalogenase  Reductive dehalogenase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.5e-05      0.29     213     239 ..      32      58 ..      14      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.5e-05
  Dehalogenase 213 akaYsrlafvqariqeFlrgLGYqgig 239
                   ++ Y+    ++ ++q+F+ +LGYq + 
    EHT99625.1  32 FHDYRADGLTDEQLQQFIDALGYQDLL 58 
                   567888899999***********9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 988.44
//
Query:       EHT99626.1  [L=375]
Description: N-succinyl-diaminopimelate deacylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-43  149.3   0.0    1.4e-43  149.0   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    3.8e-24   84.7   0.0    8.3e-24   83.6   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain
     0.0078   15.9   0.0      0.039   13.6   0.0    1.9  2  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
      0.037   12.8   0.0      0.058   12.2   0.0    1.2  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   0.0   3.2e-47   1.4e-43       1     206 [.      62     371 ..      62     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 3.2e-47
                    EEEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHH.TTTCESE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegle.erekvda 93 
                    ++++H+DvVp+++ ++w + pf++t++dG+l+GrGa+dmkg+++a++ a++++ + ++ +kg + +l++ dEE+++ +G+ +++e l+ ++e++d+
     EHT99626.1  62 AFAGHTDVVPPGDASRWINpPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAVNPHHKGRLAFLITSDEEASGtNGTVKVVERLMaRNERLDY 157
                    589*******99999**********************************************************7777***********9******* PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                       ++++ep+ +e       +v                                                                          
     EHT99626.1 158 ---CLVGEPSSSE-------IVgdvvkngrrgsitanltvhgvqghvaypqladnpvhrampalnelvatewdqgnaffpatsmqianiqagtgsn 243
                    ...77********.......444445799******************************************************************* PP

                    .....................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEEE CS
                    .....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Peptidase_M20 116 .....................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarffagi.ptvm 173
                                                         ++++e+  +g+p+ ++ ++lv+a+ +a++ +   k++l +sg g++d rf+a++  +v+
     EHT99626.1 244 nvipgelfvqfnfrfsteltdsliqqrvaelldrhqlRYTIEWKLSGQPFLTSRGKLVDAVVNAVTHYNEIKPQLQTSG-GTSDGRFIARMgSQVV 338
                    ************************************99*****************************64777*******.********99977999 PP

                    EEESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 174 ifgpgsglaHspnEyvdledlekgikvlarlle 206
                     +gp ++++H+ nE v+ +dl+   ++++r++e
     EHT99626.1 339 ELGPVNATIHKINECVKASDLQMLSRMYQRIME 371
                    9**888************************997 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.9e-27   8.3e-24       1     108 [.     175     282 ..     175     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.9e-27
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeie 98 
                 +g++G++++++tv+g++gH ++p+ ++N+++ ++ +l+el ++e+d++ + ++p t++++++i++G+ + nvip+e  +++++R++ + +   ++++++
  EHT99626.1 175 NGRRGSITANLTVHGVQGHVAYPQLADNPVHRAMPALNELVATEWDQG-NAFFPATSMQIANIQAGTgSNNVIPGELFVQFNFRFSTELTDSLIQQRVA 272
                 69**********************************************.************************************************** PP

                 HHHTSCCSTT CS
   M20_dimer  99 eilekeaped 108
                 e+l+++  ++
  EHT99626.1 273 ELLDRHQLRY 282
                 ****998766 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.7e-06     0.039      12      78 ..      58     141 ..      47     175 .. 0.83
   2 ?   -0.4   0.0      0.17   7.7e+02     117     192 ..     295     367 ..     269     372 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.7e-06
                    SEEEEEEEE--B-TTT...............TCC.T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.SSHHH CS
  Peptidase_M28  12 devlllgAHyDsvgvg...............rgp.ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.gllGS 78 
                     e+l++++H D v+ g               +g     GA D   + aa++  a+ ++a + + k ++ fl+++ EEa g  G 
     EHT99626.1  58 GETLAFAGHTDVVPPGdasrwinppfeptirDGMlFGRGAADMKGSLAAMVVAAERFVAVNPHHKGRLAFLITSDEEAsGTNGT 141
                    478999********999999998888777653336667*****999********9999977677*************9655555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.17
                    HHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHHH CS
  Peptidase_M28 117 selekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldlaetgfpevyHtprDtldnidkdtlariae 192
                     + +k ++a++++v++ ++ +p+ ++s  g+sD + +++ g +v+ l   + + ++H+ +  ++  d + l r+ +
     EHT99626.1 295 TSRGKLVDAVVNAVTHYNEIKPQLQTS-GGTSDGRFIARMGSQVVEL--GPVNATIHKINECVKASDLQMLSRMYQ 367
                    555666666666666644446655554.7899999999999999999..777888888877777777776666655 PP

>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.3e-05     0.058     381     429 ..     319     367 ..     301     369 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
                    S----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHH CS
  Peptidase_M18 381 spcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfk 429
                    + +G+t    + a++G +++ lG+   ++H i e++ ++d+++ + +++
     EHT99626.1 319 QTSGGTSDGRFIARMGSQVVELGPVNATIHKINECVKASDLQMLSRMYQ 367
                    5799*************************************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2976.64
//
Query:       EHT99627.1  [L=62]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-31  108.5  10.7    1.3e-31  108.3  10.7    1.0  1  UPF0370          Uncharacterised protein family (UPF0370)
     0.0027   17.4   0.9     0.0032   17.2   0.9    1.2  1  DUF4051          Protein of unknown function (DUF4051)
  ------ inclusion threshold ------
      0.056   13.8   0.0      0.062   13.6   0.0    1.1  1  Phage_holin_5_2  Phage holin family Hol44, in holin superfami


Domain annotation for each model (and alignments):
>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3  10.7   2.3e-35   1.3e-31       1      61 []       1      62 []       1      62 [] 0.98

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 2.3e-35
     UPF0370  1 meWLadYWWv.illllvGillngikeLkrvdhkkfLdnkpelpPhrDnndkWddeddwpkkk 61
                me+++dYWW+ ++ll+vG+l+n++k+Lkr+dhkkf+dnkp+lpPhrD+ndkWdd++dwpkkk
  EHT99627.1  1 MEFIKDYWWIlVVLLMVGVLMNVYKDLKRIDHKKFMDNKPDLPPHRDFNDKWDDDEDWPKKK 62
                999*******889999********************************************97 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.9   5.3e-07    0.0032       2      22 ..       3      23 ..       1      34 [. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.3e-07
     DUF4051  2 fIaWywlllvvlvvvgyichl 22
                fI  yw +lvvl++vg ++ +
  EHT99627.1  3 FIKDYWWILVVLLMVGVLMNV 23
                8999************98865 PP

>> Phage_holin_5_2  Phage holin family Hol44, in holin superfamily V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     1e-05     0.062      17      36 ..       3      23 ..       1      38 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
  Phage_holin_5_2 17 kvkd.kyIPlilgiiGiilgv 36
                      +kd ++I ++l+++G++++v
       EHT99627.1  3 FIKDyWWILVVLLMVGVLMNV 23
                     68899***************2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 467.78
//
Query:       EHT99628.1  [L=226]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-34  118.2   0.1    5.6e-34  117.8   0.1    1.1  1  Abhydrolase_2  Phospholipase/Carboxylesterase
    2.5e-09   37.0   0.0    3.6e-09   36.5   0.0    1.1  1  DLH            Dienelactone hydrolase family
      5e-09   35.9   3.2     0.0011   18.5   0.9    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0025   17.5   0.1     0.0027   17.4   0.1    1.2  1  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.037   13.2   0.0      0.052   12.7   0.0    1.2  1  DUF2920        Protein of unknown function (DUF2920)


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.1   1.6e-37   5.6e-34       5     216 ..       6     202 ..       4     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.6e-37
                    EEE--SS---EEEEEE--TT--SHHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHHHHHHT CS
  Abhydrolase_2   5 evvspkdkaqavviflHGlGdsghawaeaakteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelidaelkk 100
                    ++v++  k++++ ++ H +Gd+++a++e+ +++a+ ++ +++++ g+      +g++   +Wf+  gl +++  +++ +++s++++ e +++++++
     EHT99628.1   6 VIVQQPPKVAQLFLLYHAVGDNPDAMGEIGSWFAKTFPAALVVSVGS------PGPGG--QWFSEAGLHDKS--EQQCVNASMPQFVESVRHWQQQ 91 
                    5777788999**************************99999999887......55554..9*******9998..6669***************998 PP

                    T.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEET CS
  Abhydrolase_2 101 g.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksye 195
                    + i  ++++++GFSqG+ ++l+ +++ +  +g++v fsg+++  ++ +s  t++t    +++iHg+ D  vpla++ +a++ l++l  +v+l+++ 
     EHT99628.1  92 SgISPEATALVGFSQGGSMVLEGIKAHNDLAGRAVVFSGRFITLPESAS--TRTT----VHLIHGDYDDRVPLAHAHQAEQRLTALGGDVTLNVVD 181
                    77***************************************98887775..5555....9************************************ PP

                    T--SS--HHHHHHHHHHHHHH CS
  Abhydrolase_2 196 glaHsideeemqdikeflkkl 216
                    +laH+id ++m+++ ++l+++
     EHT99628.1 182 DLAHAIDHRSMNFALHHLQYT 202
                    ******************986 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0     1e-12   3.6e-09      75     192 ..      74     190 ..      59     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1e-12
         DLH  75 eekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealka 172
                  ++ + ++  +v+++++++  s++  ++vGf  GG ++l+ ++   + + +av+f G     +l e a   +++  ++g+ D  +p +++++ e+ l+a
  EHT99628.1  74 VNASMPQFVESVRHWQQQSGISPEATALVGFSQGGSMVLEGIKAHnDLAGRAVVFSG--RFITLPESASTRTTVHLIHGDYDDRVPLAHAHQAEQRLTA 170
                 5566677789******************************98766599999******..4456667788899*************************** PP

         DLH 173 anvdlelkvYpgagHaFand 192
                  + d+ l+v ++ +Ha   +
  EHT99628.1 171 LGGDVTLNVVDDLAHAIDHR 190
                 ***************96655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.4e-07    0.0016      22      88 ..      54     121 ..      36     132 .. 0.84
   2 !   18.5   0.9     3e-07    0.0011     144     193 ..     143     191 ..     133     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.4e-07
                   -TTSSTTHCH.HHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG CS
  Peptidase_S9  22 irGsggyGea.fhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdl 88 
                   + G++ ++ea  hd+ +++  ++++++f++ ++++ +++ +++e  a+ G S GG +++  +  ++dl
    EHT99628.1  54 GPGGQWFSEAgLHDKSEQQCVNASMPQFVESVRHWQQQSGISPEATALVGFSQGGSMVLEGIKAHNDL 121
                   567777777647888888899999**********************************9888777775 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3e-07
                   -EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHH CS
  Peptidase_S9 144 pplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkpra 193
                   + + lihG+ Ddrvp+a+a +  ++L+  g +v l +  d  H +   r+
    EHT99628.1 143 TTVHLIHGDYDDRVPLAHAHQAEQRLTALGGDVTLNVVDDLAHAIDH-RS 191
                   56679**************************************7763.33 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   7.5e-07    0.0027      96     149 ..      72     131 ..       7     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.5e-07
                 HHHHTHHHHHHHHHCSEECCC......EEEEEETHHHHHHHHHHHCSTTTCCEEEEES-- CS
    Esterase  96 tfltqeLlplldanfrtapdg......ravaGqSmGGlgALilalkhpdrFgsvssfSpi 149
                 + + + +++++++ ++ ++++      +a++G+S+GG++ L     h d+ g++ +fS+ 
  EHT99628.1  72 QCVNASMPQFVESVRHWQQQSgispeaTALVGFSQGGSMVLEGIKAHNDLAGRAVVFSGR 131
                 456667777777777777777777777*******************************85 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05     0.052     283     329 ..     140     188 ..     127     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
     DUF2920 283 nkntiyvsyHsekDklapaeeKiqlakilkklgfdvelelide..sdiD 329
                 +++t    +H ++D  +p+ +  q  + l++lg dv+l+++d+    iD
  EHT99628.1 140 STRTTVHLIHGDYDDRVPLAHAHQAEQRLTALGGDVTLNVVDDlaHAID 188
                 34588899*********************************75114566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1777.42
//
Query:       EHT99629.1  [L=655]
Description: putative P-loop ATPase / acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-40  138.5   3.2    1.6e-38  132.3   1.0    3.1  3  Helicase_RecD    Helicase
    5.1e-29  101.0   9.6    5.1e-29  101.0   9.6    2.4  2  tRNA_bind_3      tRNA-binding domain
    2.1e-22   79.7   0.1    6.7e-15   55.1   0.0    2.2  2  GNAT_acetyltr_2  GNAT acetyltransferase 2
    1.5e-07   31.2   0.0    3.5e-07   30.1   0.0    1.5  1  DUF1726          Domain of unknown function (DUF1726)
    9.2e-06   26.0   0.0    6.5e-05   23.3   0.0    2.2  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00013   21.9   0.0    0.00027   20.9   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00016   21.5   1.3    0.00035   20.3   0.0    2.2  2  AAA_30           AAA domain
     0.0033   17.7   0.1     0.0074   16.5   0.1    1.6  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
        0.2   11.8   0.1       0.46   10.6   0.1    1.6  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   1.0   8.1e-42   1.6e-38       1     176 [.     190     331 ..     190     332 .. 0.92
   2 ?   -1.7   0.0       1.1   2.2e+03     120     146 ..     517     543 ..     506     560 .. 0.75
   3 ?   -3.8   0.1       4.9   9.7e+03      19      43 ..     616     640 ..     613     643 .. 0.75

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 8.1e-42
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqa..dll 94 
                    vltA+RGRGKSa++G+++ +     ++++l+tap k ++  l +f+                          +++ +++apd++l+l++    d+l
     EHT99629.1 190 VLTAARGRGKSALAGMLARQ-----NTRCLITAPAKVATGVLSAFA--------------------------GEHYRFMAPDAILALETVPdvDWL 254
                    79************998654.....5689*****************..........................67899******998875445599* PP

  Helicase_RecD  95 vvDEAAaiplpllkkllekfkrvvlatTvhGYEGtGrgfslkflkqlkkekkrelreleleepiRyaegdplEkwlndlLlL 176
                    +vDE Aaip pll++l+ +f+rv+l tT++GYEG+Grgf lkf+++l+     ++r+++l+ep+R+a++dplE+wln++Ll+
     EHT99629.1 255 IVDEVAAIPAPLLHALVARFRRVLLVTTIQGYEGSGRGFMLKFCAELE-----QVRHFTLDEPLRWARNDPLENWLNQALLF 331
                    **********************************************95.....79*************************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
  Helicase_RecD 120 atTvhGYEGtGrgfslkflkqlkkekk 146
                    a ++ G   +Gr ++ k  +ql ++ +
     EHT99629.1 517 AMALLGLTSSGRQLQQKAAQQLARDWS 543
                    5566777889********999987644 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.9
  Helicase_RecD  19 aaliaegksnilvtapskenvktlf 43 
                    a+ ++ +  + l+ta + e+++ l+
     EHT99629.1 616 AQTAQLNGRKALITALRAEAAEALL 640
                    5566666689999999999998876 PP

>> tRNA_bind_3  tRNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.87   1.7e+03      62     113 ..     136     202 ..     121     207 .. 0.53
   2 !  101.0   9.6   2.5e-32   5.1e-29       1     117 [.     527     643 ..     527     645 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.87
                  HHHHHHH--S.............--HHHHHHHCS---..HHHHHHHCT-SSHHHHHHHHHHHHHHHH CS
  tRNA_bind_3  62 LqrLlekssl.............elplLrallqqkqs..vaeivkqlglsGrKallarlReevaqaL 113
                  LqrL e++++             + p+L ++ +q +   +  +++  gls   a+l++ R   ++aL
   EHT99629.1 136 LQRLIEQDAQglllrqpsplnvpDWPALPEWHSQATVqqQTILCQLNGLSAGVAVLTAARGRGKSAL 202
                  5555555555444444444444444444444443332001234555555555566666666655555 PP

  == domain 2  score: 101.0 bits;  conditional E-value: 2.5e-32
                  HHHHHHHHHHHHHHHHHHHHHHHTS--SS---------HHHHHHHHHHHHS---TCCCHHHHHHHHHH--S--HHHHHHHCS---HHHHHHHCT-SSH CS
  tRNA_bind_3   1 GeaLaqqaeqrlaRdaawlqqiielalplspeadqalneqdwreLagFAfahrPleaslaaLqrLleksslelplLrallqqkqsvaeivkqlglsGr 98 
                  G++L+q+a+q+laRd+ +l+  i+lalpls ++d a +  d r+ agFA+a+rP+easla LqrL+  s+ +l lLr+ +   ++ ++++++ +l+Gr
   EHT99629.1 527 GRQLQQKAAQQLARDWSFLSAHIPLALPLSAADDCAFTPFDARLAAGFAWAQRPFEASLAVLQRLVIVSQAPLRLLRQAVRADTNLSRLAQTAQLNGR 624
                  89************************************************************************************************ PP

                  HHHHHHHHHHHHHHHHCC- CS
  tRNA_bind_3  99 KallarlReevaqaLaeld 117
                  Kal+++lR e+a+aL +l+
   EHT99629.1 625 KALITALRAEAAEALLALQ 643
                  ***************9876 PP

>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.4e-18   6.7e-15       4     118 ..     361     468 ..     358     476 .. 0.93
   2 !   22.9   0.1   2.4e-08   4.7e-05     177     223 ..     474     520 ..     466     524 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 3.4e-18
  GNAT_acetyltr_2   4 allvssHYknsPnDLqllsDaPahklfvLlapkkekkklpevlcvvqvalEGkiskesvknslsrgkrasGdlipwtlsqqfqdeefaslsGaR 97 
                       ll+s+HY++sP DL  l DaP  +l  L++      ++p +  ++ +  EG +s+  +++++++ +r++G+l++  l+ +   +++a+l  +R
       EHT99629.1 361 QLLTSAHYRTSPLDLRRLLDAPGMHLW-LAG------TVPALQGALWLVEEGGLSEALAQAVWAGHRRPRGNLVAQSLAAHAGFTDAATLRALR 447
                      799**********************97.555......4799999999*********************************************** PP

  GNAT_acetyltr_2  98 ivRiAvhpelqkmGYGsrale 118
                      i RiAv p  +++G G + ++
       EHT99629.1 448 ISRIAVAPRGRRQGTGRQLVT 468
                      ****************98775 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.4e-08
  GNAT_acetyltr_2 177 pekldylgvsfGltseLlkFWkragfspvylrqtaneltGEhsaiml 223
                      ++  dy++vsfG t+ L  FW+ +gf+   +  ++   +G ++a+ l
       EHT99629.1 474 ATGYDYISVSFGYTEALWAFWRACGFTLARIGSQREASSGCYAAMAL 520
                      56679***********************9999999999998888776 PP

>> DUF1726  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.7e-10   3.5e-07       6      85 ..      64     142 ..      61     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.7e-10
     DUF1726   6 kvLGqtydllvldlfealtPnalgrlvetVrGGGliilllppleelkqlytdfhkkl..vveplteevkkrfnkrfirklke 85 
                  +LG++++ +v+d+ + ++++a+++l +t   G  ++ll+pp+++++q  ++   +   v+ep     +++f+++++r +++
  EHT99629.1  64 TLLGREFHHAVFDARSGFHAEAFAALAGTLTAGSWLLLLVPPWRQWPQQPDADSLRWadVSEP---IATPHFIRHLQRLIEQ 142
                 68*********************************************9888554444223444...4689999999888776 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.8   1.6e+03      29      40 ..     186     198 ..     170     200 .. 0.74
   2 !   23.3   0.0   3.3e-08   6.5e-05      12      75 ..     432     500 ..     397     501 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.8
                     E.EEE-GGGTTSS CS
  Acetyltransf_7  29 r.laVdpeyrgkG 40 
                       +aV++++rg+G
      EHT99629.1 186 AgVAVLTAARGRG 198
                     159*********9 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.3e-08
                     TEEEEEEEEEEES.TCTEEEEE-GGGTTSSHHHHHHHHTT...SEEE..EE.EEEETHHHHHH.HHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld.aeitrlaVdpeyrgkGiGraLleaae...kgii..le.qlelnaekaik.fYeklGFe 75 
                       + Gf  ++ l    i r+aV+p  r++G Gr+L++aa+   +g+    +   ++   +a+  f++ +GF+
      EHT99629.1 432 AAHAGFTDAATLRaLRISRIAVAPRGRRQGTGRQLVTAACaaaTGYDyiSVsFGYT---EALWaFWRACGFT 500
                     4455766655555678888*****************97333455532211111222...33334******96 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.4e-07   0.00027      42     123 ..     434     518 ..     422     521 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.4e-07
  Acetyltransf_10  42 ivGviel.rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav..geeqeenGirfvpM 123
                      ++G+    +  +  +is+++V+p  r+qG g++L+ a++++a   ++  +++   + +  +f + +GF+    g+++e++  ++  M
       EHT99629.1 434 HAGFTDAaTL-RalRISRIAVAPRGRRQGTGRQLVTAACAAATGYDYI-SVSFGYTEALWAFWRACGFTLAriGSQREASSGCYAAM 518
                      5566644222.2369**************************9766655.99999999***********8776677777777666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.8e-07   0.00035       4     158 ..     172     316 ..     169     331 .. 0.80
   2 ?   -2.2   0.3       1.4   2.8e+03      35      63 ..     612     640 ..     603     649 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.8e-07
      AAA_30   4 aeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg..ieastiakllkrlkgrarlepg.tllivDEagm 99 
                  +Q++++ +l + ++ vavlt++ G GK+ + +    ++++++ r ++ Ap + a  vL++ +g   + +  + +l    +  +  p+ + livDE++ 
  EHT99629.1 172 VQQQTILCQLNGLSAGVAVLTAARGRGKSALAG----MLARQNTRCLITAPAKVATGVLSAFAGehYRFMAPDAIL----A-LETVPDvDWLIVDEVAA 261
                 6899999999999999************97655....556677799**************7666323444444444....2.2223455********** PP

      AAA_30 100 vdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRqk 158
                 + +  l+al+++ ++    v+lv   +  +  ++G +l+ ++e ++ ++ +L+e  R +
  EHT99629.1 262 IPAPLLHALVARFRR----VLLVTTIQGYEGSGRGFMLKFCAELEQVRHFTLDEPLRWA 316
                 *************88....9999999999999999999999999999999999998874 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
      AAA_30  35 lkalreaweaaggrviglAptgkaAkvLa 63 
                 l+ l+++++ +g++ ++ A  ++aA++L 
  EHT99629.1 612 LSRLAQTAQLNGRKALITALRAEAAEALL 640
                 56677777777899999999999999874 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.7e-06    0.0074      47     117 .]     434     499 ..     398     499 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.7e-06
                     EEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT.EHHHHHHHHH.TTE CS
  Acetyltransf_1  47 fisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed.ndaairlYek.lGF 117
                     +++++       +   i ++aV+p  r++G G++L++a+   a    +  i +  +    +a  +++ + +GF
      EHT99629.1 434 HAGFTDAAT--LRALRISRIAVAPRGRRQGTGRQLVTAACAAATGYDY--ISV--SFGyTEALWAFW-RaCGF 499
                     555555544..35567899*********************97776644..433..222245669999.55998 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00023      0.46      13      53 ..     433     474 ..     425     479 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
  Acetyltransf_CG  13 afleYe.vrkegvldfthTeVpeelrGkGiAkkLvkaaldda 53 
                      a++ ++ +     l +  + V ++ r++G +++Lv+aa   a
       EHT99629.1 433 AHAGFTdAATLRALRISRIAVAPRGRRQGTGRQLVTAACAAA 474
                      666665122333789999*******************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4510.72
//
Query:       EHT99630.1  [L=287]
Description: putative neutral zinc metallopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.5e-134  446.1   1.1   6.2e-134  446.0   1.1    1.0  1  Zn_peptidase   Putative neutral zinc metallopeptidase
  ------ inclusion threshold ------
      0.024   15.2   0.0      0.045   14.3   0.0    1.5  1  Aspzincin_M35  Lysine-specific metallo-endopeptidase


Domain annotation for each model (and alignments):
>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.0   1.1  6.9e-138  6.2e-134       1     290 []       1     283 [.       1     283 [. 0.95

  Alignments for each domain:
  == domain 1  score: 446.0 bits;  conditional E-value: 6.9e-138
  Zn_peptidase   1 mrwrgrresdnvedrrassggegaGGggkgrslggktgllvlilvlvgllfGvdlsallglgqesstaeaaaqssegtaeeaedeqkefvsvvladt 97 
                   mrw+grresdnvedrr++s+g  +GGg       gk+g+++lilv v+ ++G dl+ ll+ g+e ++   ++q+++++ ++ +de+++f+sv+la+t
    EHT99630.1   1 MRWQGRRESDNVEDRRNQSSG--MGGGR-IPLPRGKAGIIMLILVAVAGYYGYDLTPLLT-GGEATPG--SQQQQRSADPH-QDEAAKFTSVILATT 90 
                   9***************99988..88866.666777799999999999*************.5555554..45555555555.8************** PP

  Zn_peptidase  98 edtWtqifkekgktyqkpklvlfsrvvrsaCGtassatGPfyCPadrkvyldlsffdelkqklgaaGdfaaayviahevGhhvqnllGilekveqar 194
                   edtW ++f++++k+y+ pklv++++++r++CGt++s++GPfyCPad++vy+dlsf+de+k+klga Gdfa++yviahevGhhvq+llGi+++v+q++
    EHT99630.1  91 EDTWDKLFRQMHKQYTPPKLVMYRGATRTGCGTGQSVMGPFYCPADQTVYIDLSFYDEMKHKLGAGGDFAQGYVIAHEVGHHVQKLLGIEPRVRQMQ 187
                   ************************************************************************************************* PP

  Zn_peptidase 195 qgaseaeanqlsvrleLqadcfaGvWansvqqkgllekgdieealnaakaiGddtLqkqsqgrvvPdsfthGtsqqrqrWfkrGfesGdlaqcdtf 290
                   qgas+++ nqlsv++eLqadcfaGvW+++++q+++le gd++ealnaa+aiGdd+Lq++sqgrvvPdsfthGtsqqr++WfkrGf++G++ qcdtf
    EHT99630.1 188 QGASQSQINQLSVKMELQADCFAGVWGHYMEQEKILEVGDLQEALNAAEAIGDDRLQQKSQGRVVPDSFTHGTSQQRYTWFKRGFDTGNPGQCDTF 283
                   ***********************************************************************************************8 PP

>> Aspzincin_M35  Lysine-specific metallo-endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     5e-06     0.045      25     108 ..      92     174 ..      72     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-06
  Aspzincin_M35  25 skvaavfskiakeckslnsgsltyscsdvkgsCk..sevlAytv.psslnviylcpaffs.lpeltkkctgtd.sqagtivHEltHfte 108
                    ++  ++f++++k+    ++ +l+++  +++++C   ++v+  ++ p + +++y+  +f++ ++   k   g d  q ++i HE+ H  +
     EHT99630.1  92 DTWDKLFRQMHKQ---YTPPKLVMYRGATRTGCGtgQSVMGPFYcPAD-QTVYIDLSFYDeMK--HKLGAGGDfAQGYVIAHEVGHHVQ 174
                    5556788888886...788888888888999**878888777776888.9**********444..4444555668**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2193.10
//
Query:       EHT99631.1  [L=237]
Description: phosphoribosylaminoimidazole-succinocarboxamide synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-60  204.2   0.0    2.9e-60  204.0   0.0    1.0  1  SAICAR_synt    SAICAR synthetase
     0.0094   15.0   0.0      0.015   14.3   0.0    1.2  1  Peptidase_M42  M42 glutamyl aminopeptidase
  ------ inclusion threshold ------
      0.068   13.0   0.1        8.3    6.3   0.0    2.6  2  IF2_N          Translation initiation factor IF-2, N-terminal


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0   0.0   4.8e-64   2.9e-60       2     251 ..       7     231 ..       6     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 204.0 bits;  conditional E-value: 4.8e-64
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH..--BSEEEE.....-SSSEEEEE-EEEESEEEEEEEE--H CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek..ipnhliksldpeqlegrsmlvkklkmlpvEvvvRgyltG 97 
                  ly+GK++ vY+++++d l+l++++++sA d+++ e++++KG v++++++f+++kl++  ip+++ +      l++++ lvkkl+m+pvE+vvR+ ++G
   EHT99631.1   7 LYRGKAKTVYSTDNPDLLILEFRNDTSAGDGARIEQFDRKGMVNNKFNHFIMTKLQEagIPTQMEAL-----LSDNEALVKKLEMVPVECVVRNRAAG 99 
                  89******************************************************668***99955.....9************************* PP

                  HH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT..-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEE CS
  SAICAR_synt  98 slwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealg..teeeaeeieelalavyekaaelaaergiilvDtKlEFGl 193
                  sl        k    rl  g++eg  l++p+f++++K++e+ hD++++e+ +  ++g  ++e++++++el+ + ++ +++l+++ g+ilvD+KlEFGl
   EHT99631.1 100 SL-------VK----RL--GVEEGMVLNPPLFDLFLKDDEK-HDPMVNESYCE-TFGwvSKENLARMRELTYKANDVLSKLFDDAGLILVDFKLEFGL 182
                  **.......89....99..*********************7.8*******997.9999**************************************** PP

                  ETTTTEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHHHHHHHHHHH CS
  SAICAR_synt 194 deedgelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeveekwkekler 251
                     +ge+vL+De+ tpD  R+wd+et       +++DK+++R+ l+   e+++ +++r
   EHT99631.1 183 F--KGEVVLGDEF-TPDGARLWDKET------LDKMDKDRFRQSLGGLIEAYEAVARR 231
                  9..6*********.************......99******************988765 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.6e-06     0.015     205     265 ..      33      90 ..      25      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-06
                    STTS-CEEEEEETTCCSHHHHHHHHHHHHHHTT--EEEEEESSSSSTHHHHHTSTTTSEEE CS
  Peptidase_M42 205 klgkGpvirvkDasgiyhpklrkkllelAkknnipyqlevlsgggtDAgaihltgegvpta 265
                    + g+G+ i  +D++g++++k+++++++  ++++ip q+   +   +D +a++++ e vp+ 
     EHT99631.1  33 SAGDGARIEQFDRKGMVNNKFNHFIMTKLQEAGIPTQM---EALLSDNEALVKKLEMVPVE 90 
                    48************************************...56677777777777777765 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0014       8.3      17      44 ..      54      79 ..      51      81 .. 0.89
   2 ?    3.9   0.0    0.0077        46      12      30 ..     153     171 ..     148     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
       IF2_N 17 skevikkLfkelGievkshsssLDeeta 44
                ++ +++kL +e+Gi+  ++   L++++a
  EHT99631.1 54 NHFIMTKL-QEAGIP-TQMEALLSDNEA 79
                5679****.77****.********9987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0077
       IF2_N  12 eLgvkskevikkLfkelGi 30 
                 eL  k+++v+ kLf ++G 
  EHT99631.1 153 ELTYKANDVLSKLFDDAGL 171
                 78899**********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1914.37
//
Query:       EHT99632.1  [L=343]
Description: lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.8e-109  364.6   1.7   4.4e-109  364.4   1.7    1.0  1  Lipoprotein_18  NlpB/DapX lipoprotein
    0.00098   18.9   0.3      0.043   13.7   0.0    2.7  2  FlgD_ig         FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> Lipoprotein_18  NlpB/DapX lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.4   1.7  4.9e-113  4.4e-109       1     319 []      40     341 ..      40     341 .. 0.99

  Alignments for each domain:
  == domain 1  score: 364.4 bits;  conditional E-value: 4.9e-113
                     GGGGS---------TTS---TS-SST-----...-S-S--GGGSB-S--------STTEEEEEETTEEEEEECGS.CC.TSHHHHHHHHHHHTT- CS
  Lipoprotein_18   1 eYleapklkslkvPagltlPeqnteYdipevkekaekgavGkkldirpPaqvlplveGsrveessdeatlllessdeskdelweqvasvlaekni 95 
                     +Yl+a+ l++lk+P+g++lP qn+eYdip     +++++vGk+ldirpPaq+l+l++Gsr+++s+++  l+++++   + ++w+qv  v+++kn+
      EHT99632.1  40 SYLQASGLRELKAPPGMILPVQNGEYDIPPS---TSQTPVGKQLDIRPPAQPLALMNGSRAQFSNNTGALIFDNN---RGSIWSQVVGVVQAKNF 128
                     6******************************...999**************************************...578************** PP

                     -EEEEETTTTEEEEEEEE.......EE-TTGSSEEEEEEE..EEEEEESSEEEEEEEEEEEEETTEE..E--HHHHHHHHHHHHHHHHHHHHHHH CS
  Lipoprotein_18  96 piakeddaqgvleTdwvenqevveswsraDedvelrqrYrfrievkpqgrqaalvvslldleegektkevlspedkqryeadmlnqviseldkkr 190
                     pia+++da ++l+Tdwv+       w+raDed+++r+rY+  i+vk+q++q+ l+v+ll+l++++++  ++spe++qry+a+mln++ +++dk  
      EHT99632.1 129 PIASRNDAGQQLTTDWVQ-------WNRADEDKQYRGRYQ--ISVKSQSYQQVLTVRLLELQQEGTN--ITSPEQIQRYTAQMLNEIAAGMDKVA 212
                     ******************.......***************..**********************888..9************************* PP

                     HHHHHHHHHHXXSXXXEEEEETTTSXEEEEEESXHHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEEXXXXHHHHHHHTSXXXXXXSEEEEEEEE CS
  Lipoprotein_18 191 eqaeaakaarqskgisvqlgadenglpvlivrapfdvvWerLplvLpklgfevedrdrsqGlyevkYkepssgfWsslgakeldlkegeYrlqlg 285
                     +++e+a+a r  + i+vq++ad++glp+l++r+pf+v+W+rLp++++++g++v+d++rs+G+++v+Yk+p+s++W+slgak+++l +g+Y++q+g
      EHT99632.1 213 TANENAAAGRVNGAIDVQSAADDTGLPMLVLRTPFNVAWQRLPAAMKRVGMDVTDTTRSTGSMKVTYKAPGSSTWDSLGAKDPELPNGDYKVQVG 307
                     *********************************************************************************************** PP

                     EETTEEEEEEEXTTSSBXXHHHHHHHHHHHHHHH CS
  Lipoprotein_18 286 dlgnrtsitllDeegkplsqeevealvavlaaal 319
                     dl+nrts++++D++g+ l+q++++alv v++aa+
      EHT99632.1 308 DLDNRTSLQFIDPKGHVLTQAQNDALVSVFQAAM 341
                     *******************************997 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.015   1.4e+02      53      76 ..     146     167 ..     123     170 .. 0.84
   2 !   13.7   0.0   4.8e-06     0.043      13      73 ..     248     306 ..     239     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.015
                 EE-SB-TTS-B--SEEEEEEEEEE CS
     FlgD_ig  53 tWdGtdndGnkladGaYtvkvtat 76 
                 +W+   +d  k   G+Y+++v+++
  EHT99632.1 146 QWN--RADEDKQYRGRYQISVKSQ 167
                 677..556667789*******987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.8e-06
                 EEEEE..ESSSEEEEEEEE-SS--EEEEEEEEESSSEEEEEEE-SB-TTS-B--SEEEEEEE CS
     FlgD_ig  13 plgve.lpeaadevtvtikDasGevVrtidlgaqsaGvvsftWdGtdndGnkladGaYtvkv 73 
                 +++++ lp+a + v + ++D +  +  +++++ ++ G+   tWd  ++++  l++G+Y+v+v
  EHT99632.1 248 NVAWQrLPAAMKRVGMDVTDTTRST-GSMKVTYKAPGS--STWDSLGAKDPELPNGDYKVQV 306
                 5677799999999999999999999.999999999975..58******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2826.26
//
Query:       EHT99633.1  [L=292]
Description: dihydrodipicolinate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-114  382.0   0.1   1.3e-114  381.8   0.1    1.0  1  DHDPS            Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
      0.099   12.8   0.4        0.4   10.8   0.1    2.0  2  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.8   0.1  1.4e-118  1.3e-114       2     287 ..       2     287 ..       1     289 [. 0.99

  Alignments for each domain:
  == domain 1  score: 381.8 bits;  conditional E-value: 1.4e-118
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgv 100
                 f+g+i+alvtp+d +g++++++l+kli++++++g+ ++v++GttGEsatls+ee+ ++v ++ ++a+gripviag+G+n+t+e i+l+k++e++G+ g+
  EHT99633.1   2 FTGSIVALVTPMDDKGNVCRASLKKLIDYHVASGTAAIVSVGTTGESATLSHEEHGDVVLQTLDLADGRIPVIAGTGANATAEGISLTKRFENSGVIGC 100
                 89************************************************************************************************* PP

                 EEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT- CS
       DHDPS 101 lavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevgkdlviysGddelllsalslGa 199
                 l+vtPYYn+p+qeglyqhfkai+e+t+lp++lYnvpsrtg+d+ petv+rLae++ni+g+Kea+g+l++v +i++ v++ +++ sGdd+ +l++++lG+
  EHT99633.1 101 LTVTPYYNRPTQEGLYQHFKAIAESTSLPQMLYNVPSRTGCDMLPETVARLAEIKNIIGIKEATGNLSRVSQIQELVDDAFILVSGDDASALDFMQLGG 199
                 *************************************************************************************************** PP

                 SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHHHHHH CS
       DHDPS 200 dGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleeeekeeleallk 287
                 +Gvisvt+n+a+++m++l+k++++G++ ea+ ln++l++l++ lf epn+i+vk+a+++lGl +++tlr P+tpl+  +++++e++l 
  EHT99633.1 200 NGVISVTANVAAREMAELCKLAQQGNFVEARRLNQRLMHLHQTLFCEPNPIPVKWAAKQLGLIANDTLRLPMTPLTAVAQPKVEQALV 287
                 ***********************************************************************************99875 PP

>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.5e-05       0.4      62      90 ..     148     176 ..     145     194 .. 0.88
   2 ?   -0.7   0.0      0.16   1.4e+03      54      77 ..     203     226 ..     187     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
                      HHHHHHHHHHHHHHHHHSSGGG-SEEEEE CS
  YjgF_endoribonc  62 aarlaalnalaqlkeaaGelarvkrlirl 90 
                       arla +  +  +kea+G+l+rv ++  l
       EHT99633.1 148 VARLAEIKNIIGIKEATGNLSRVSQIQEL 176
                      69***********************9877 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.16
                      B-HHHHHHHHHHHHHHHHHHHHHH CS
  YjgF_endoribonc  54 vsvseGiaaarlaalnalaqlkea 77 
                      +sv   +aa  +a l  laq  + 
       EHT99633.1 203 ISVTANVAAREMAELCKLAQQGNF 226
                      577888888889999999986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2289.64
//
Query:       EHT99634.1  [L=193]
Description: DNA-binding transcriptional repressor, regulatory protein accessory to GcvA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-25   87.7   0.3    7.1e-24   83.6   0.1    2.1  2  ACT_6     ACT domain
    0.00077   20.0   0.0      0.061   13.9   0.0    2.2  2  ACT_4     ACT domain
  ------ inclusion threshold ------
      0.018   14.8   0.0        5.3    6.9   0.0    2.3  2  ACT       ACT domain


Domain annotation for each model (and alignments):
>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.1   1.2e-27   7.1e-24       1      76 []       7      82 ..       7      82 .. 0.98
   2 ?    2.1   0.0     0.031   1.9e+02      10      32 ..     103     125 ..      95     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.2e-27
       ACT_6  1 eillitvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgpedalarlekaLlflakelgltvefk 76
                ++l+it++G drpG+++ +t++++ +g+ni D+++a++++++++++l+sg+++a++ +e++L+ + +el+l +++k
  EHT99634.1  7 HHLVITALGVDRPGIVNTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGSWNAITLIESTLPLKGAELELLIVMK 82
                68*********************************************************************99986 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.031
       ACT_6  10 pdrpGltasLtsvlaefgvnilD 32 
                 +d p ++ ++t++  +++ ni++
  EHT99634.1 103 ADSPHIIERFTDLTDKHQMNIAE 125
                 799*****************986 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     1e-05     0.061       8      40 ..      10      42 ..       3      54 .. 0.81
   2 ?    4.0   0.0     0.013        76       7      38 ..      96     127 ..      95     147 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnak 40
                 ++  + dr+g+++ it+ +s+++ ni++ ++ 
  EHT99634.1 10 VITALGVDRPGIVNTITRHVSSCGCNIEDSRLA 42
                578889*********************987765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
       ACT_4   7 vrleveaedrkglLaditqviseekanivsvn 38 
                 + ++ve+ d+++++ + t++  ++++ni ++ 
  EHT99634.1  96 AFIQVEVADSPHIIERFTDLTDKHQMNIAELV 127
                 5699***********************99874 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0018        10       6      29 ..      14      37 ..       8      42 .. 0.78
   2 ?    6.9   0.0   0.00089       5.3       3      39 ..      98     134 ..      96     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0018
                EEESSTTHHHHHHHHHHHTTSEEE CS
         ACT  6 gvpDrPGlLarvfgaladrgiNid 29
                +  DrPG+ + +++ ++  g Ni+
  EHT99634.1 14 LGVDRPGIVNTITRHVSSCGCNIE 37
                678**********97777777765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00089
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedk 39 
                 + v+v+D P+++ r++ +  +++ Ni+ + +r    +
  EHT99634.1  98 IQVEVADSPHIIERFTDLTDKHQMNIAELVSRIQPAQ 134
                 889************************9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1468.93
//
Query:       EHT99635.1  [L=155]
Description: thiol peroxidase, thioredoxin-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-39  133.2   0.0    5.1e-39  133.0   0.0    1.1  1  AhpC-TSA    AhpC/TSA family
      9e-28   96.8   0.0    1.1e-27   96.6   0.0    1.0  1  Redoxin     Redoxin
    3.6e-06   26.9   0.0    5.7e-06   26.3   0.0    1.3  1  SCO1-SenC   SCO1/SenC
      2e-05   24.7   0.0    2.6e-05   24.3   0.0    1.3  1  AhpC-TSA_2  AhpC/TSA antioxidant enzyme
     0.0029   17.2   0.0     0.0033   17.0   0.0    1.1  1  DUF899      Bacterial protein of unknown function (DUF899)
     0.0034   16.9   0.0     0.0058   16.2   0.0    1.3  1  GSHPx       Glutathione peroxidase


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.0   1.7e-42   5.1e-39       2     123 ..       7     134 ..       6     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 1.7e-42
                 TSB----EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT- CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygv 100
                 gd ap+f+l+++dge+v+l+d++g+ v+++fypk+ +p+Ct +++ l+++++e+k++gvev+g+s+d+pe++ +f+eke lnf+llsDe+++v++++gv
  EHT99635.1   7 GDTAPKFSLPDQDGEQVNLADFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVEVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCQQFGV 105
                 99************************************************************************************************* PP

                 EETT......TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 101 lkee......kglalratfvidkegkiry 123
                 + e+      + +  r +f++d++gki++
  EHT99635.1 106 WGEKtfmgktYDGIHRISFLVDANGKIEK 134
                 ***************************86 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   3.7e-31   1.1e-27       1     133 [.       5     138 ..       5     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 3.7e-31
                 -TTSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHH CS
     Redoxin   1 kagdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftk 99 
                 kagd+aP+f+lp+  +dg++v+l++f+g++v+v+f+p a +P C+ +++ l++  ++lk+ gv+v+++++d+ +  ++f++ke l+f++lsD+++++ +
  EHT99635.1   5 KAGDTAPKFSLPD--QDGEQVNLADFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVEVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCQ 101
                 79*********99..**********************************666665555***************************************** PP

                 HTT-TTEEE.GGG...EEE-E.EEEEEETTEEEEEEES CS
     Redoxin 100 alGlrleedaseg...lrtpr.yavidedgkvvyleve 133
                 ++G  + e+  +g    ++ r ++++d++gk+ +++  
  EHT99635.1 102 QFG-VWGEKTFMGktyDGIHRiSFLVDANGKIEKVFDD 138
                 ***.67888777789966666369*********99865 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.9e-09   5.7e-06       3     133 ..      12     131 ..      10     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.9e-09
   SCO1-SenC   3 pFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiakaak 101
                 +F+l dqdge+v+ +d++g+ +lv+f     +  C+++   +++ +d+l++++  v++l i+    +D pe+l +++e+   +++ l+++  +   +++
  EHT99635.1  12 KFSLPDQDGEQVNLADFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VEVLGIS----TDKPEKLSRFAEKELLNFTLLSDEDHQ---VCQ 101
                 7***************************************************5..5556665....79**********988888888887765...588 PP

   SCO1-SenC 102 efrvyvekvedeesdytvdHsssvyLvdpdgr 133
                 +f+v  ek+   ++ y   H    +Lvd++g+
  EHT99635.1 102 QFGVWGEKTFMGKT-YDGIHRI-SFLVDANGK 131
                 99999888888888.7777754.568888886 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.7e-09   2.6e-05       2      55 ..      53     107 ..      52     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.7e-09
  AhpC-TSA_2   2 Lsrdkpeldaagvklvaigigdp.sakkFvkltgfpfelyvDpsaklyqalglkr 55 
                 L++  +el++agv++ +i+ ++p ++ +F++ +  +f l+ D++ ++ q++g++ 
  EHT99635.1  53 LRDNMDELKKAGVEVLGISTDKPeKLSRFAEKELLNFTLLSDEDHQVCQQFGVWG 107
                 78889******************55***************************984 PP

>> DUF899  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06    0.0033      83     173 ..      41     134 ..      11     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
      DUF899  83 egCpgCslladhvdgalahLeardvtlavvsraplekleaykrrmGwtlpwvssaesdfnrdfnvsleeeq...aseelpglsvflrddgrvfh 173
                 +  pgC++ a  +  ++ +L++++v +  +s    ekl ++ ++   ++ + s+ + ++ ++f+v  e++    + + ++ +s  +  +g++ +
  EHT99635.1  41 AMTPGCTVQACGLRDNMDELKKAGVEVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCQQFGVWGEKTFmgkTYDGIHRISFLVDANGKIEK 134
                 5569************************************************************988876533334444444544444466554 PP

>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.9e-06    0.0058       4      79 ..      13      90 ..      11     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
                BEEEBTTSSEEEGGGGTTSEEEEE..EEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTS CS
       GSHPx  4 lsakdidgekvkleklrgkvvliv..nvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfr 79
                +s  d+dge+v+l  ++g+ vl+     a + g t q   l++   ++k+ g+ +lg   ++  k    +++e+ +f+
  EHT99635.1 13 FSLPDQDGEQVNLADFQGQRVLVYfyPKAMTPGCTVQACGLRDNMDELKKAGVEVLGISTDKPEKLSRFAEKELLNFT 90
                777899**************99862257999**************************999998888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1277.04
//
Query:       EHT99636.1  [L=356]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-78  261.6  39.9    1.1e-77  261.4  39.9    1.0  1  AI-2E_transport  AI-2E family transporter
  ------ inclusion threshold ------
       0.16   12.0   0.1       0.16   12.0   0.1    2.7  3  DUF4577          Domain of unknown function (DUF4577)


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4  39.9   1.2e-81   1.1e-77       3     326 ..      20     345 ..      18     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 1.2e-81
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqni 96 
                       +lv+ll ++++++f+s ll pll+A+vlayll++++ +L++ g+ r++a+++vl+l++++l +lvl+++p++++q ++l+++lp+++++l   
       EHT99636.1  20 GLLVILLAGFCILFFLSGLLAPLLVAVVLAYLLEWPTVRLQRIGCTRSWATSIVLVLFAGILLVLVLIVAPVAWQQGINLTRDLPNMLNKLYLY 113
                      57999***************************************************************************************** PP

  AI-2E_transport  97 lnelpslleele.n.liqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkailrele 188
                         lp++++ l     i+ +  +l+  ls + +s+++++l  l  l +l+++lvlv+l++ffll+d++++++ ++++lp++ r  ++++++e++
       EHT99636.1 114 AAGLPRRFPALVdAgIIDVIVENLRGRLSGVGDSLVKYSLASLVGLMTLMIYLVLVPLMVFFLLKDKDQMLNAVRRVLPRN-RGLAAEVWQEMN 206
                      ***********8548888899999999999999998888888888888****************************99999.************ PP

  AI-2E_transport 189 ktlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltgg..ikevlivlivvllvqliegnilePk 280
                      +++++y+rg+vl ++++g++++  +l+lg++y+llla+lvg++ liPyiGa++v+ip +i ++l++   ++e++++l v+l++q+++gn+l P 
       EHT99636.1 207 QQITNYIRGKVLEMIVVGIASWLAFLYLGLNYSLLLAVLVGISVLIPYIGAMLVTIP-VIGVALFQWglGTEFWTLLTVYLVIQALDGNVLVPV 299
                      *********************************************************.677777776699************************ PP

  AI-2E_transport 281 lmgkrlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      l++++++lhplvi+ls++++g l+G++G+++a+pl++++ka+++a+
       EHT99636.1 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLVKAVVHAW 345
                      *******************************************998 PP

>> DUF4577  Domain of unknown function (DUF4577)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   3.1         2   1.8e+04      62      77 ..      32      48 ..      19      53 .. 0.56
   2 ?   -1.2   0.2      0.21   1.9e+03      62      75 ..      75      88 ..      63      98 .. 0.60
   3 ?   12.0   0.1   1.8e-05      0.16      61     102 ..     152     193 ..     102     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 2
     DUF4577 62 lffv.gliivlivslal 77
                lff+ gl+  l+v+++l
  EHT99636.1 32 LFFLsGLLAPLLVAVVL 48
                34432555556666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.21
     DUF4577 62 lffvgliivlivsl 75
                ++f g+++vl++ +
  EHT99636.1 75 VLFAGILLVLVLIV 88
                34444444444433 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF4577  61 slffvgliivlivslalvsfvifliiqtgskmddvsrrltae 102
                 sl  +  ++ l++ l+lv +++f++++  ++m +  rr+   
  EHT99636.1 152 SLASLVGLMTLMIYLVLVPLMVFFLLKDKDQMLNAVRRVLPR 193
                 454444457899********************9999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 2645.33
//
Query:       EHT99637.1  [L=651]
Description: secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.8e-170  565.8   0.1     9e-170  565.6   0.1    1.0  1  Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127


Domain annotation for each model (and alignments):
>> Glyco_hydro_127  Beta-L-arabinofuranosidase, GH127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  565.6   0.1    5e-174    9e-170       3     519 .]      12     560 ..      10     560 .. 0.98

  Alignments for each domain:
  == domain 1  score: 565.6 bits;  conditional E-value: 5e-174
                      EE-SSHHHHHHHHHHHCHH....HCHHHHHHHHHHHHTT---SS---SGGG----TTT-TTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH CS
  Glyco_hydro_127   3 rltdsffldrqetvreyll....aldpdrlletfrkeaglpskaeaaggwedektgeelrdgdlgkwleavalllastkdkelekrldrlvdel 92 
                      +++d f ++ q+ vr++++    a+ +dr++ ++ ++a + ++++aag+  +e++g++++d+d+ kwleava +l +++d elek++d++++ +
       EHT99637.1  12 QIHDPFLGQYQHLVRDVVIpyqwAALNDRIDDAEPSHA-IANFRIAAGQQTGEFYGMVFQDSDVAKWLEAVAWSLCQKPDAELEKTADEVIELV 104
                      67899**************7777777889999999999.999**************************************************** PP

                      HHHCHSSS-B-GCCTHHSSEETTEESH..----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCS-CCHHHHHTTTHHCTHHHHH CS
  Glyco_hydro_127  93 akaQqedGYlsavtelkneakkeawap..dshelYnlgkliegavayyqatgkeklldvatrladyleevleklgdeqlqkalvpehggieeal 184
                      a+aQ edGYl+++ + k  a++++w++  ++helY++g++ie+ va +qatgk++ll v+++lad++   ++++g+ ++q +++p+h +ie al
       EHT99637.1 105 AAAQCEDGYLNTYFTVK--APQDRWTNlaECHELYCAGHMIEAGVAFFQATGKRRLLAVVCKLADHI---DSVFGPGEQQLHGYPGHPEIELAL 193
                      *****************..********977*************************************...************************ PP

                      HHHHHHHT-CHHHHHHHHCCHHCCHCC.........................T-HCTTT-SSTCGCHHCHHCCHHHHHHHHHHHHHHHHHCTTH CS
  Glyco_hydro_127 185 vklyelTgdkrYldlAkrfidergldp.........................eklaykqdelpvrhqntaigkavRatylysgladvyeetgdd 253
                      ++ly +T ++rY+ l  +f+++rg++p                         + +ay+q+++p  +q++a+g+avR +yl++g+a+++++++d+
       EHT99637.1 194 MRLYDVTQEPRYMALTDYFVTQRGTQPhfyddeyqkrgqtsywhtygpawmiKDKAYSQAHQPLAEQQQAVGHAVRFVYLMTGVAHLARLSQDE 287
                      ***************************************************999**************************************** PP

                      CCHHHHHHHHHHHHHHCB-TTS-B-BCEEECE--STT--HCCCH--BHHHHHHHHHHHHHHHHCH--CHHHHHHHHHHHHTTGGGB-TTTS-BB CS
  Glyco_hydro_127 254 kllkaaerlwdnvvtkkmyvtGGigakhdgEaFgppyelpnrlayaEtCasinmlklarrlleltpdakyadvlEralyNsilagvsldgksff 347
                      + ++   rlw+n+ ++++y+tGGig++ +gEaF+++y+lpn++ yaE+Casi+++++arr+le++ d++yadv+EralyN++l+g++ldgk+ff
       EHT99637.1 288 SKRQDCLRLWHNMAQRQLYITGGIGSQSSGEAFSSDYDLPNDTVYAESCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFF 381
                      ********************************************************************************************** PP

                      SB--STTTBS--SS........SC-BTTTTT-CHHHHHHHHCCGGGGGSEEEETTEEEE-S-SSEEEEECGCT-EEEEEEEE-TTSSSEEEEEE CS
  Glyco_hydro_127 348 Yvnplesgskklrk........lystkwdscaCCppnglrtvaklgeyiYaesddtvyvnLyiaselklklkgkeveleqetnyPwegkvkltv 433
                      Yvnple ++k l           ++++w++caCCppn++r++++lg+yiY+ ++d++++nLyi++++++ + ++++ l+   n+Pw+++v++t+
       EHT99637.1 382 YVNPLEVHPKSLPFnhiydhvkPVRQRWFGCACCPPNIARLLTSLGHYIYTPREDALFINLYIGNRVEIPVGNQTLGLRISGNLPWQETVTITI 475
                      *****999998766888999999*********************************************************************** PP

                      EETT--CEEEEEEE-TT-S-EEEEETTEEE--S-STTEEEEEEEE--TT-EEEEEE---EEEEE--TT-CCGTTEEEEEETTEEEE CS
  Glyco_hydro_127 434 ktqkkaeftlklRiPgWaaaatltvnGkkvvvkkksdgYleiereWkkgdkvelelpmsvrleeanpkvrddankvavlrGPlvla 519
                      ++ ++++++l+lR+P+W+a++++t nG++ v+++ + gYl+++r+W++gd+v+l+lpm+vr ++ np+vr  a+kvav+rGPl+++
       EHT99637.1 476 DSTQPVNHALALRLPDWCASPQITCNGTE-VNEAARKGYLYLNRHWQEGDTVTLTLPMPVRRVYGNPLVRHVAGKVAVQRGPLIYC 560
                      *****************************.9******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4823.89
//
Query:       EHT99638.1  [L=259]
Description: putative permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-31  107.1  18.0    8.4e-31  107.0  18.0    1.0  1  MFS_2       MFS/sugar transport protein
    3.6e-05   22.9  20.3    3.6e-05   22.9  20.3    1.7  1  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.93    7.7  13.7        1.3    7.2  13.7    1.1  1  DUF2070     Predicted membrane protein (DUF2070)
        1.1    8.9   6.2        2.5    7.7   0.9    2.7  2  Leu_leader  Leucine operon leader peptide


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0  18.0   1.9e-34   8.4e-31     184     426 ..       2     241 ..       1     242 [. 0.91

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 1.9e-34
       MFS_2 184 lgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqp 281
                 ++++ +++ ++erv           +k++l+e l  + +n+++l++ll+ +l +  ++++ g ++Y++tyvl  + +  s+f+++vt++++lg++++ p
  EHT99638.1   2 VMFLCCFFWVRERVPL------DTLGKFTLREHLAGLRKNDQLLLMLLMSFLLINVFNIRGGGYMYFITYVLQgSTAYTSLFFTMVTLASILGSFIVNP 94 
                 5788889999***998......7899*******************99999999999*****************8999999999999************* PP

       MFS_2 282 lakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpw..smladvvDygelktGkrregvffavlsfisklatgiglgvsg 378
                 l +r++  ++y++  +++++  +++++l+ +  +  l l+vi + gv++ ++lp   +++a + Dyge+k+G r+ g+ fa+++f+ kla + +++++ 
  EHT99638.1  95 LSRRIDTVRLYFWTNIVLAAVALCMWFLPVGPAWQSLWLVVILSNGVILGFTLPLhfALMAFADDYGEWKNGVRSSGMNFAFNLFFIKLAWASSAVIIS 193
                 ****************************667777777777777777777777665227788889*********************************** PP

       MFS_2 379 llLsafgyrakasvqspqvvlalrllyavlpavlllvallllvrypln 426
                 ll  a+ y+ + + q+p+ ++a++ + ++lpa+++l+ ++ +   +l+
  EHT99638.1 194 LLFIAVAYKPGTGNQTPASLHAITAMETLLPALFHLLLAFAVRACKLT 241
                 ***************************************999888876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9  20.3   8.1e-09   3.6e-05     163     325 ..       2     154 ..       1     189 [. 0.64

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.1e-09
       MFS_1 163 lafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsg...lltllplylqevlglsglllaglllallalvg 257
                 ++f++  ++++++++ +    +k          l++++  l+k+ +l+ +ll+++ll+  +f++    ++++ +y   vl  s   +++l++ ++ l++
  EHT99638.1   2 VMFLC--CFFWVRERVPLDTLGKFT--------LREHLAGLRKNDQLLlMLLMSFLLIN-VFNIrggGYMYFITY---VLQGS-TAYTSLFFTMVTLAS 85 
                 45565..666666666655544444........55667778999988756666666665.888886633333333...44444.366666677777777 PP

       MFS_1 258 ailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl.iGfglgfvfpsllala 325
                 + +++++  ls+r+   r  +++ ++l+++al++ +l+v      l+lv++l  G+ lgf+ p+ +al+
  EHT99638.1  86 ILGSFIVNPLSRRIDTVRLYFWTNIVLAAVALCMWFLPVGPAWQSLWLVVILsNGVILGFTLPLHFALM 154
                 777*************99999999999999999999999933333333333358889999855444433 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  13.7   0.00029       1.3      18     169 ..      38     201 ..      27     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00029
     DUF2070  18 llliillall.igllaflssk.............lfgillfglpalvaflltlpvlrilggrltykrs.lflalltelivviisllaillsallqalvl 101
                 lll++l+++l i + +++ +              + ++l+f++ +l+++l  + +++ l++r+++ r  ++ +++ + +++ + +l++  ++   +++ 
  EHT99638.1  38 LLLMLLMSFLlINVFNIRGGGymyfityvlqgstAYTSLFFTMVTLASIL-GSFIVNPLSRRIDTVRLyFWTNIVLAAVALCMWFLPVGPAW---QSLW 132
                 45555554440344444444488888888888886677777777666654.55677777788777777455556666666666666666663...4444 PP

     DUF2070 102 lalvls....lalvfalrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifalavy 169
                 l ++ls    l +++ l + ++ + +d+ ++k  + ++ +++++ l+++ +   + +  ++++sl+f++++y
  EHT99638.1 133 LVVILSngviLGFTLPLHFALMAFADDYGEWKNGVRSSGMNFAFNLFFIKL---AWASSAVIISLLFIAVAY 201
                 4455555555999999999999****************9999999999999...677788888888888876 PP

>> Leu_leader  Leucine operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.9   0.00056       2.5      10      20 ..      46      56 ..      43      57 .. 0.87
   2 ?    3.0   0.4     0.018        78      11      19 ..     229     236 ..     226     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00056
  Leu_leader 10 lLLlNAfnvRG 20
                 LL+N fn+RG
  EHT99638.1 46 FLLINVFNIRG 56
                6*********9 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.018
  Leu_leader  11 LLlNAfnvR 19 
                 LLl Af vR
  EHT99638.1 229 LLL-AFAVR 236
                 999.****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1927.46
//
Query:       EHT99639.1  [L=203]
Description: glycoside-pentoside-hexuronide family sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-47  160.2  11.6    6.4e-47  160.1  11.6    1.0  1  MFS_2       MFS/sugar transport protein
    0.00034   19.6   2.7    0.00051   19.0   1.6    1.9  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1  11.6   7.2e-51   6.4e-47       1     173 [.      27     198 ..      27     203 .] 0.97

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 7.2e-51
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 +yglg+++ +++++l++++l++Fytdv+gl++alvg++++v r++Dai+Dp++G+++d+t+ rwGr+rPw l  a++ ++  +l ft+p ls + k++w
  EHT99639.1  27 GYGLGDAGGTVITCLITNFLTFFYTDVFGLTPALVGTLFMVLRIFDAISDPVMGVIADRTHSRWGRFRPWQLWIALPVGIIGTLTFTAPALSMDMKLVW 125
                 6************************************************************************************************** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgyli 173
                 +++ty+ll + yt++++py++l++++t++ +e +s +s+r++l  ++g+l+++  + lv+ lg  +++  gy++
  EHT99639.1 126 AFATYLLLSLSYTAINVPYCALINTMTTRHSEVLSCQSWRFVLCGVAGFLVSVGLPWLVAELGK-GNAVLGYRA 198
                 **********************************************************999998.777777776 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.6   5.7e-08   0.00051      21     137 ..      45     153 ..      36     179 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.7e-08
  MFS_1_like  21 Yltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkk.....vvilslllsavlflsllfippskerqeesklevsvaqdvdaektfwi 113
                 +lt + +   gl+++ +g + ++l ++  +s p++gv+aDr+  r        + ++l + ++ +l ++  p             + + d+     f++
  EHT99639.1  45 FLTFFYTdVFGLTPALVGTLFMVLRIFDAISDPVMGVIADRTHSRWGrfrpwQLWIALPVGIIGTLTFT-AP-------------ALSMDMKLVWAFAT 129
                 6666555257********************************999886666633344444444444323.34.............55666667777888 PP

  MFS_1_like 114 lfllvvlasfflaailvlldaatl 137
                 ++ll + ++++  + ++l++++t 
  EHT99639.1 130 YLLLSLSYTAINVPYCALINTMTT 153
                 888888888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1498.66
//
Query:       EHT99640.1  [L=273]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-17   61.2   0.2    1.7e-16   60.3   0.2    1.5  1  HTH_18        Helix-turn-helix domain
    2.3e-11   43.5   0.1    2.9e-09   36.8   0.0    2.7  3  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    3.8e-07   30.1   1.3      1e-06   28.7   1.3    1.8  1  AraC_binding  AraC-like ligand binding domain
    8.3e-05   22.2   0.1    0.00014   21.5   0.1    1.3  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
       0.18   11.5   0.0       0.37   10.5   0.0    1.5  1  Cupin_3       Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.2   4.7e-20   1.7e-16       1      81 []     186     265 ..     186     265 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.7e-20
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 la+ l++++ +L r+ +rv+ lt +e ++r R+  A +lL+   +ls++++A ++GF+d ++F++ frkl+g+tP+ + rr
  EHT99640.1 186 LAKTLHCNADYLGRVYRRVFRLTLTEAIHRQRIVMAEKLLT-GDSLSLTDVARQCGFNDVGYFRQIFRKLTGLTPASWKRR 265
                 7999**********************************997.599*********************************987 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         2     7e+03      19      31 ..     110     123 ..     107     125 .. 0.77
   2 ?    3.7   0.0      0.02        72      10      38 ..     182     210 ..     173     214 .. 0.76
   3 !   36.8   0.0   8.1e-13   2.9e-09       7      40 ..     228     262 ..     225     262 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
                 TS.SHHHHHHHHHH CS
    HTH_AraC  19 gf.SrsyFsrlFkk 31 
                  + ++ y + lF++
  EHT99640.1 110 RVgDPAYVIALFRQ 123
                 56689999999998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.02
                 -HHHHHHHTTSSHHHHHHHHHHHSSS-HH CS
    HTH_AraC  10 tiediAdelgfSrsyFsrlFkketGmtPs 38 
                 +   +A +l+++  y+ r++++++  t +
  EHT99640.1 182 STSGLAKTLHCNADYLGRVYRRVFRLTLT 210
                 5555899***************9866655 PP

  == domain 3  score: 36.8 bits;  conditional E-value: 8.1e-13
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                 ++l+++d+A ++gf +  yF+++F+k tG tP ++
  EHT99640.1 228 DSLSLTDVARQCGFnDVGYFRQIFRKLTGLTPASW 262
                 689*****************************988 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   1.3   2.8e-10     1e-06      16      77 ..      26      87 ..      19     145 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.8e-10
                  EEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE- CS
  AraC_binding 16 fpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfe 77
                  +p ++   ++i+ +++G+ ++r ++  +++++G+ +Ll+pg++H +e     +++++wl+f+
    EHT99640.1 26 HPARRLTSWEIIFIERGQLTIREDDVLFRVTAGESLLLRPGHWHVGEGVFPPDLKFYWLHFD 87
                  556666689***************************************************96 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.8e-08   0.00014      17      56 ..      32      70 ..      19      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.8e-08
                SSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEE CS
     Cupin_2 17 pgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHr 56
                +   e++++ +G+++++ d+  ++++aG+s++  +g +H 
  EHT99640.1 32 TSW-EIIFIERGQLTIREDDVLFRVTAGESLLLRPGHWHV 70
                444.9**********************************5 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0001      0.37      21      60 ..      29      67 ..      17      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
                ECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 21 ltyeedEfcyileGevkvtpeggetvelraGDlvvlpkgl 60
                 + + +E+++i +G+ ++++ +   +++ aG ++ l++g 
  EHT99640.1 29 RRLTSWEIIFIERGQLTIRE-DDVLFRVTAGESLLLRPGH 67
                56678***************.8888**********99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2134.74
//
Query:       EHT99641.1  [L=521]
Description: hypothetical protein CKS_1722 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-42  144.2   0.1    5.1e-42  143.4   0.1    1.5  1  GGDEF     Diguanylate cyclase, GGDEF domain
      6e-21   75.4   0.8    9.5e-21   74.7   0.2    1.6  2  dCache_1  Cache domain
    6.6e-07   29.6   0.1      2e-06   28.0   0.1    1.8  1  GGDEF_2   GGDEF-like domain
  ------ inclusion threshold ------
       0.15   11.2   0.0       0.61    9.2   0.0    1.8  2  dCache_2  Cache domain
        6.9    6.7   6.1        1.2    9.2   1.8    1.9  2  SHP       Small hydrophobic protein


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.1   1.4e-45   5.1e-42       1     160 [.     366     515 ..     366     516 .. 0.91

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 1.4e-45
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a++D+lT+L NRr l+  l+   q     q+++avl ld+d+Fk++nd++Gh+vGD+v+q+va++L++s+rk+d+v R gg+eF++llp+ts+++a+++
  EHT99641.1 366 AQTDPLTQLLNRRGLNAVLDYF-QTL---QQPFAVLALDIDHFKNVNDNWGHDVGDRVIQQVARTLQQSARKQDIVSRNGGEEFLMLLPDTSLADAEAI 460
                 689***********99888754.333...689*************************************************************999999 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 aerir   a  + +     +  ++++siG+a + +     le+ lk+Ad+aly+aK+agrn
  EHT99641.1 461 AERIRLSFAGEAVE-----NVGNIMLSIGVAEW-SARRVPLETSLKRADDALYQAKNAGRN 515
                 99998777766553.....556799********.5*************************9 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.2   2.6e-24   9.5e-21      22     248 ..      43     268 ..      37     269 .. 0.80
   2 ?   -2.3   0.0      0.85   3.1e+03      21      70 ..     382     433 ..     373     457 .. 0.66

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 2.6e-24
    dCache_1  22 iedvldslenlaetlasnpslqdlleepnra........neasreslqallksilksnpdisgvylvdadGqviassdpssppnlegtddpadrdwyke 112
                 i+++l+  ++ a  las+++++  l +            + +++e l   ++ + +  +++++v++vd++G+v a s++s       t+    +d  +e
  EHT99641.1  43 IDSTLEANRAYAAKLASTSEVFFRLAQSQLHfsanvlgkDFDNEELLKTEVNRLREQTDSFNSVAVVDENGTVRAISPESLTL----TGMHLTSDASRE 137
                 7777877777777777777644444443333788888999999999999999999999****************988766543....457777777999 PP

    dCache_1 113 alaggggkpvisdpyvdqtggkpvitiavpiyddsgkfiGvlaadldldn..lqdllsniklgetg.yvfivdsdGniiahpdkdllgknlrdelkaqe 208
                 al+++  +p is+p v+++ +++ i ++ pi + +g+++G++++ + l    + + l   +++++g +vf++ds++++++h++++l+gk++   l++  
  EHT99641.1 138 ALQTR--QPMISKPTVSAA-NNLLIFVSWPIWNSQGRYLGYVGGTIYLKKksILNALLGEQFYRDGtSVFVLDSNNQVLYHQNRQLVGKTIPPLLSD-- 231
                 ***9*..9***********.**********************9999885555666555567899998************************999975.. PP

    dCache_1 209 alekalakiesgvssvklngeeylva.yapiptglgWylvv 248
                     ++ k  ++   ++ ++ ++ +a ya +pt +gW++v+
  EHT99641.1 232 --RERQEKDNGSLVLTETDKPTR-LAgYAIVPT-TGWMVVA 268
                 ..444334445555555555566.888*****8.*****96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.85
    dCache_1  21 niedvldslenlaetlasnps.lqdlleepnra.....neasreslqallksilks 70 
                 ++ d++++l++    la +++ +++     n +         +++++++l++ +++
  EHT99641.1 382 AVLDYFQTLQQPFAVLALDIDhFKNV----NDNwghdvGDRVIQQVARTLQQSARK 433
                 67778888888888888886533333....33344446555566666666665544 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   5.6e-10     2e-06      19     114 ..     390     506 ..     383     507 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.6e-10
     GGDEF_2  19 ldgpyvvvviel...........eedaerllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg........lsvriGiGsp 96 
                 l++p++v+++++           ++ ++r+++++++ l+++  ++d++  + g+++ +llp  + +daea++er++  ++g        + ++iG+   
  EHT99641.1 390 LQQPFAVLALDIdhfknvndnwgHDVGDRVIQQVARTLQQSarKQDIVSRNGGEEFLMLLPDTSLADAEAIAERIRLSFAGeavenvgnIMLSIGVAEW 488
                 899*********77766665554336667*********8887566777777888**********************99999999999889999999988 PP

     GGDEF_2  97 veglaglrrSyreArrAl 114
                  ++   l +S++ A +Al
  EHT99641.1 489 SARRVPLETSLKRADDAL 506
                 888888888888888887 PP

>> dCache_2  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.23   8.4e+02     124     148 ..      81     105 ..      44     133 .. 0.76
   2 ?    9.2   0.0   0.00017      0.61      78     123 ..     184     228 ..     183     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
    dCache_2 124 kdkdGryiiremiklakkkgeGfve 148
                 kd d+++++++++++ +++++ f+ 
  EHT99641.1  81 KDFDNEELLKTEVNRLREQTDSFNS 105
                 6667777777777777777666654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00017
    dCache_2  78 kklikealrsirydggegyyfiidskgtlilhpdspsleGknlldl 123
                 kk+i++al   +++++   +f++ds+++++ h+++ +l Gk++  l
  EHT99641.1 184 KKSILNALLGEQFYRDGTSVFVLDSNNQVLYHQNR-QLVGKTIPPL 228
                 6889999999999999999****************.****988655 PP

>> SHP  Small hydrophobic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.8   0.00033       1.2      25      44 ..      12      31 ..       9      43 .. 0.91
   2 ?   -2.4   0.1       1.3   4.7e+03      25      40 ..     296     310 ..     289     317 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00033
         SHP 25 ltlislliiitimiailnkl 44
                 tli+ll+ii+i+i++ n l
  EHT99641.1 12 HTLIALLVIISIVITLANNL 31
                59**************9988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
         SHP  25 ltlislliiitimiai 40 
                 ltl+   +i++ mia+
  EHT99641.1 296 LTLLV-AVILARMIAM 310
                 44432.2456667775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4013.25
//
Query:       EHT99642.1  [L=276]
Description: 3',5'-cyclic-nucleotide phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-18   68.1   0.0    1.9e-18   67.8   0.0    1.2  1  Metallophos    Calcineurin-like phosphoesterase
    9.3e-11   42.2   0.7    4.2e-10   40.1   0.7    2.0  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.1e-22   1.9e-18       3     203 ..       8     201 ..       6     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 2.1e-22
                  EEEEESBTB.......TTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSS.HHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHH CS
  Metallophos   3 ilvigDlHl.......algggqlddllkllddl.lreekpdlvllaGDlvdrg.dlekellel.laalvkypipvylllGNHegfeeellnkygylgi 90 
                  i++i+DlH+        + +  + +ll+++  l + +++pd+v+++GDlvd g   e+ +l+  l+ l +   p+yl++GNH+    + + +++    
   EHT99642.1   8 IAQISDLHIkaqerlsYKKVDTHTALLRAIATLnALQPRPDVVVITGDLVDFGtAAEYQTLREaLEGLER---PFYLMAGNHD----DRQALRA---A 95 
                  89********99977733333333333333333422369**************94444455553777777...**********....5555555...4 PP

                  H.HHHHEHHHCEEETSEEEEEETTEEEEEEEESE..CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESS......CSSS CS
  Metallophos  91 f.sepwrsdaevfnnlplaslgsgslkvlllhGg..spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsply......rgsg 176
                  f  +++ + + ++n+  ++       +v+ll  +   p++              ++ e +     wl d    +++ +++v+ H+p+          +
   EHT99642.1  96 FpDHTYLQQGPTLNWRLIVR------DVQLLALDssVPHQ--------------PWGELDdrqLRWLDDALTASPDMPTLVMLHHPPFvcgidhMDRQ 173
                  44999999999998888888......66666666213333..............33333345588999999999**************9999998888 PP

                  CSCCHHHHHHH.HHHTTESEEEEESSSS CS
  Metallophos 177 ylfgdealedl.lkkygvdlvisGHtHv 203
                   l  +eal+ +  + ++v  v++GH+H+
   EHT99642.1 174 RLRQPEALAAIiARHPQVERVLCGHVHR 201
                  88888888888799*************6 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.7   4.7e-14   4.2e-10       4     144 ..       9     217 ..       7     229 .. 0.64

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 4.7e-14
  Metallophos_2   4 aiiSDlH...............snldaleavlealkevgvdaiihaGDl....eeeepevleellela..pvlaVrGNnDeevveedvlreaaelg 78 
                    a iSDlH                +l +  a l+al+   +d ++ +GDl     ++e ++l+e+le +  p++   GN+D    +++ lr+a +  
     EHT99642.1   9 AQISDLHikaqerlsykkvdthTALLRAIATLNALQPR-PDVVVITGDLvdfgTAAEYQTLREALEGLerPFYLMAGNHD----DRQALRAAFPDH 99 
                    66777775555555553333224444444449999998.*********8653322222344444443378**********....444444444444 PP

  Metallophos_2  79 tdl........................................peeaelelagekvlliHgdpl............gvkdalaellkeaeegsdvv 122
                    t+l                                         ++ + + +  ++ ++H+ p             + ++ala+ + +   +++ v
     EHT99642.1 100 TYLqqgptlnwrlivrdvqllaldssvphqpwgelddrqlrwlDDALTASPDMPTLVMLHHPPFvcgidhmdrqrlRQPEALAAIIAR-HPQVERV 194
                    4445555556666666666666666666666654333223221333333334444******988************************.6666699 PP

  Metallophos_2 123 vcGHtHvpevekeggvlvv.nPG 144
                    +cGH H++  ++  g+l    PG
     EHT99642.1 195 LCGHVHRAVQTRFAGTLACiAPG 217
                    ********888777665442677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2153.74
//
Query:       EHT99643.1  [L=328]
Description: ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-34  118.4   0.0    4.9e-34  117.8   0.0    1.3  1  ABC_tran     ABC transporter
    8.7e-10   38.9   0.0    0.00039   20.3   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.5e-05   23.9   0.1    0.00068   19.7   0.0    2.8  3  TOBE_2       TOBE domain
    0.00022   21.6   0.7     0.0006   20.2   0.7    1.7  1  AAA_16       AAA ATPase domain
    0.00053   19.5   0.1     0.0064   15.9   0.1    2.0  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0012   18.9   0.0     0.0017   18.3   0.0    1.2  1  Rad17        Rad17 P-loop domain
     0.0048   17.3   0.5      0.065   13.7   0.5    2.2  1  AAA          ATPase family associated with various cellular a
  ------ inclusion threshold ------
      0.031   14.5   0.3       0.18   12.0   0.0    2.2  2  AAA_28       AAA domain
      0.037   14.2   0.7        6.2    7.0   0.0    3.1  3  AAA_33       AAA domain
      0.038   13.9   0.0      0.063   13.2   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.058   12.5   0.0        0.1   11.7   0.0    1.3  1  G-alpha      G-protein alpha subunit
      0.062   13.6   1.0       0.22   11.8   0.6    2.0  1  AAA_22       AAA domain
      0.068   13.7   0.0       0.28   11.7   0.0    1.9  2  AAA_18       AAA domain
       0.12   12.2   0.1       0.32   10.9   0.0    1.7  2  NACHT        NACHT domain
       0.13   12.3   0.1        0.4   10.7   0.1    1.8  2  AAA_5        AAA domain (dynein-related subfamily)
       0.14   12.4   0.2        1.8    8.9   0.2    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   4.4e-37   4.9e-34       1     136 [.      23     166 ..      23     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 4.4e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeei 85 
                 l+ ++l++++ge+++++G++G+GK+t l++++gl++  + Ge+++d++++++  l++ ++++g+++q+  lfp+l+v++n             e+++++
  EHT99643.1  23 LHPLDLSVHAGETLVLLGPSGCGKTTTLRIISGLERTdAPGEVWFDDRNVTD--LPIEKRNVGMVFQNYALFPNLNVAQNvayglkvqgipraEREARV 119
                 67899*****************************998678***********9..*************************************9999999* PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++l+ ++l+ l+++++     +LSgGqkqrvalaral+ +pk+ll+DEp 
  EHT99643.1 120 QEMLELVDLTALAQRHI----DKLSGGQKQRVALARALAARPKVLLFDEPL 166
                 *****************....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.8e-06    0.0054       3      36 ..      37      79 ..      36     106 .. 0.80
   2 !   20.3   0.0   3.5e-07   0.00039     232     298 ..     134     198 ..      85     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.8e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarl.........drdvegltdel 36
                vl Gp g+GK++ L+++++l r+         dr+v++l +e+
  EHT99643.1 37 VLLGPSGCGKTTTLRIISGLERTdapgevwfdDRNVTDLPIEK 79
                89******************98887777766666665555555 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 3.5e-07
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll....ellkelsrngaQviltTHS 298
                 + +++lS G+k+  al+ al++++   ++ll+DEp + L+ kl +rl     +llk+l+      i +TH+
  EHT99643.1 134 RHIDKLSGGQKQRVALARALAARP---KVLLFDEPLAALDAKLRERLRadigDLLKKLAI---TAIYVTHD 198
                 447889*******9*******999...9*************9999999866677777755...99999998 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.94     1e+03      37      66 ..       8      38 ..       4      39 .. 0.86
   2 ?   -2.0   0.0       3.7   4.1e+03      52      66 ..     196     211 ..     189     212 .. 0.72
   3 !   19.7   0.0   6.1e-07   0.00068       4      68 ..     258     318 ..     257     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.94
      TOBE_2 37 velaggqlvvvrqpnadr.dsalapGdtVel 66
                v+l g ++ +++ ++ +  d  + +G+t+ l
  EHT99643.1  8 VTLRGCARRFAHHQALHPlDLSVHAGETLVL 38
                8899999999999999999999999999865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.7
      TOBE_2  52 adr.dsalapGdtVel 66 
                 +++ ++a+a Gd++++
  EHT99643.1 196 THDqQEAMALGDRIAV 211
                 3444679999999876 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 6.1e-07
      TOBE_2   4 RPEklrlaaaggan.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelsw 68 
                 RPE++ la  +++  + +G ++  ++lG+s r++++++  + + v++++++   ++ +G+++  s+
  EHT99643.1 258 RPEDVLLA--EAGRyARHGCIVASTFLGASQRLQIDIGLDKPIQVERHARE---NWHAGQRISWSL 318
                 9******3..5545599*******************************999...999999987655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.7   5.4e-07    0.0006      18     131 ..      29     189 ..      15     204 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.4e-07
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd.............................ggiflrgkcdql..esaipy...sa.laqalareel 81 
                 +v++g  e ++l G+sG+GK++ +r +   le++                             +++f +     l   ++++y   ++ + +a  re  
  EHT99643.1  29 SVHAG--ETLVLLGPSGCGKTTTLRIIS-GLERTdapgevwfddrnvtdlpiekrnvgmvfqnYALFPN-----LnvAQNVAYglkVQgIPRAE-REAR 118
                 45555..7899*************9999.5666679998888888888888888877333332233333.....24444477744433244444.4344 PP

      AAA_16  82 lrqlldeaesaeleawrekleeala........................avpelagaeasrllellkrllalls 131
                 ++++l+     +l a +++  + l+                        + ++l++++++rl++ + +ll++l+
  EHT99643.1 119 VQEMLEL---VDLTALAQRHIDKLSggqkqrvalaralaarpkvllfdePLAALDAKLRERLRADIGDLLKKLA 189
                 4433333...4444444444444444666777777777788888888888888888888999999888886655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.18     2e+02      27      41 ..      36      50 ..      20      54 .. 0.78
   2 !   15.9   0.1   5.7e-06    0.0064     125     201 ..     127     201 ..      79     218 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.18
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                 +++Gp G+GK+  l
  EHT99643.1 36 LVLLGPSGCGKTTTL 50
                4789*******9765 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.7e-06
                 HHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
       SMC_N 125 ellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreem 201
                 +l + a+ +++ LSgG+k+ vala  +A    +p+ + l+De  aaLD+k ++++   +    k+     i ++++++ 
  EHT99643.1 127 DLTALAQRHIDKLSGGQKQRVALARALAA---RPK-VLLFDEPLAALDAKLRERLRADIGDLLKKlaITAIYVTHDQQE 201
                 333333445679***********998875...555.5689*********999998887777666622445555555443 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.5e-06    0.0017      44      66 ..      32      54 ..      18      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.5e-06
       Rad17 44 kkriLLisGPsGCgkstvvkvLs 66
                  + L++ GPsGCgk+t+++++s
  EHT99643.1 32 AGETLVLLGPSGCGKTTTLRIIS 54
                45579999*************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   5.8e-05     0.065       2      21 ..      37      56 ..      36     204 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.8e-05
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                +l Gp G+GKT++ + +   
  EHT99643.1 37 VLLGPSGCGKTTTLRIISGL 56
                799************99876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.18       3      21 ..      37      57 ..      35      79 .. 0.76
   2 ?   -0.7   0.1       1.3   1.5e+03      63      81 ..     145     165 ..     105     171 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
      AAA_28  3 vitGgestGKTtlleaLa..a 21
                v++G++++GKTt+l+ ++  +
  EHT99643.1 37 VLLGPSGCGKTTTLRIISglE 57
                99************9887442 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
      AAA_28  63 qleeeaaa..aankvlfcDrg 81 
                 q+ ++a+a  a +kvl++D  
  EHT99643.1 145 QRVALARAlaARPKVLLFDEP 165
                 222222224477888888865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0056       6.2       3      17 ..      37      51 ..      36      61 .. 0.88
   2 ?    2.7   0.1      0.11   1.3e+02      86     121 ..     144     179 ..     110     201 .. 0.86
   3 ?    0.9   0.0      0.42   4.7e+02      63      88 ..     265     290 ..     260     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0056
      AAA_33  3 llvGlpGsGKstlae 17
                +l G++G+GK+t ++
  EHT99643.1 37 VLLGPSGCGKTTTLR 51
                688*********876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
      AAA_33  86 arflklarrlgvpvrivvvetdeetlkeRlakRaan 121
                 ++ ++lar l ++ +++ ++ + + l ++l++R ++
  EHT99643.1 144 KQRVALARALAARPKVLLFDEPLAALDAKLRERLRA 179
                 788999999999************999999999775 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.42
      AAA_33  63 arkalsagrnvildatnlsrrerarf 88 
                 a+  + a+ ++i+ +t+l +++r ++
  EHT99643.1 265 AEAGRYARHGCIVASTFLGASQRLQI 290
                 5555667889**********999665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.7e-05     0.063      88     121 ..      21      55 ..       3      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.7e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++l+ l   ++  +t vl+G+SG GK+t +  + +
   EHT99643.1  21 QALHPLDLSVHAgETLVLLGPSGCGKTTTLRIISG 55 
                  55555655555549**************9988876 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.4e-05       0.1      25     148 ..      35     195 ..      25     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.4e-05
                 EEEEEESTTSSHHHHHHHHHHHCS--................--HHHH.HCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS-HCH CS
     G-alpha  25 kllllGqseSGKsTilkqlkllykkg................fseeel.atwraviqlnivrsiktilealesleselsesfelqelkerldplkkvea 106
                 +l+llG s++GK+T+l+ +  l++                  ++++++   ++++  +  ++ ++++   l+ ++++  e+    +   +l +l ++ +
  EHT99643.1  35 TLVLLGPSGCGKTTTLRIISGLERTDapgevwfddrnvtdlpIEKRNVgMVFQNYALFPNLNVAQNVAYGLKVQGIPRAEREARVQEMLELVDLTALAQ 133
                 589**************9997775554667774333333322222222122333444444555555555555566666555555666666666777777 PP

                 HHH................................HHCCHHC-HCHHHHHHHHCCSHHHHHHHC CS
     G-alpha 107 sliaklssateee......................qeiefnpraevgedikaLwndpgiqelye 148
                 ++i+kls++++++                       +  +  r++++ di +L ++ +i ++y 
  EHT99643.1 134 RHIDKLSGGQKQRvalaralaarpkvllfdeplaaLDAKL--RERLRADIGDLLKKLAITAIYV 195
                 7777777777777777766666665555444333333333..4477777777777777766665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   0.00019      0.22       8      24 ..      36      52 ..      31     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_22  8 lvvtGesGtGKTtllrr 24
                lv+ G+sG+GKTt+lr 
  EHT99643.1 36 LVLLGPSGCGKTTTLRI 52
                899***********985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.28       2      45 ..      37      90 ..      36     124 .. 0.78
   2 ?   -0.7   0.0       1.8     2e+03      18      52 ..     173     209 ..     149     253 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
      AAA_18  2 lltGtpGvGKttlakeLskrlgf.........gvnlrdvakenglllevdpe.a 45
                +l G++G+GKtt  + +s ++            +n++d+  e++ + +v+++ a
  EHT99643.1 37 VLLGPSGCGKTTTLRIISGLERTdapgevwfdDRNVTDLPIEKRNVGMVFQNyA 90
                589**************8775336777778888888888777777777777754 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
      AAA_18  18 Lskrlgf..gvnlrdvakenglllevdpealdeskrl 52 
                 L++rl    g+ l+++a    +++ +++ea    +r+
  EHT99643.1 173 LRERLRAdiGDLLKKLAITAIYVTHDQQEAMALGDRI 209
                 3333311345555555555555555555544444443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.32       2      22 ..      35      54 ..      34      67 .. 0.77
   2 ?   -2.5   0.0       3.7   4.1e+03      90     114 ..     162     186 ..     129     202 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                +++l G++G+GKTt l+ + +
  EHT99643.1 35 TLVLLGPSGCGKTTTLRII-S 54
                799***********99744.4 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.7
                 STT-SS-TCH.........HHHHHC CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselir 114
                 +De  + l++k ++++r  +++l++
  EHT99643.1 162 FDEPLAALDAKLRERLRADIGDLLK 186
                 2344444444444444555555554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00036       0.4       2      20 ..      36      54 ..      35      65 .. 0.88
   2 ?   -3.1   0.0       6.5   7.3e+03      93     114 ..     208     236 ..     205     250 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
                EEEE--SSSSHHHHHHHGG CS
       AAA_5  2 vlLvGppGtgKselaerla 20
                ++L+Gp+G+gK++  + ++
  EHT99643.1 36 LVLLGPSGCGKTTTLRIIS 54
                79***********999887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.5
                 EEE..-SSSEEE---.............- CS
       AAA_5  93 rllleeggelvkakndd.ller......f 114
                 r+ ++e g+lv+ + ++ + +r       
  EHT99643.1 208 RIAVMEQGRLVQIATPQaIYQRpasrfvA 236
                 55677778888877777665556755443 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0016       1.8      27      83 ..     133     176 ..     127     179 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 +r++ +lSGG+kq    +ala ala           +++++++DE  + lD++ +++
  EHT99643.1 133 QRHIDKLSGGQKQR---VALARALA----A------RPKVLLFDEPLAALDAKLRER 176
                 68889999999954...44444443....3......466788888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2336.33
//
Query:       EHT99644.1  [L=271]
Description: permease component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.6  11.3    1.9e-13   50.6  11.3    2.2  2  BPD_transp_1     Binding-protein-dependent transport system i
  ------ inclusion threshold ------
      0.095   12.6   0.6      0.095   12.6   0.6    4.2  6  Bac_export_3     Bacterial export proteins, family 3
       0.43   10.4   7.7        5.8    6.7   1.7    2.9  2  Mannosyl_trans4  DolP-mannose mannosyltransferase
        1.1    9.6   3.6         12    6.3   0.4    2.9  3  Sigma_reg_N      Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   5.5      0.35   1.6e+03      19     168 ..      12      74 ..       2      80 .. 0.39
   2 !   50.6  11.3   4.1e-17   1.9e-13       3     182 ..      77     261 ..      75     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.35
  BPD_transp_1  19 llrpliivllslPsfvlaillvlvf..................vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   ++++l+ ++  +P+++ ++  v                     v                                                     
    EHT99644.1  12 AITTLTALFIIVPVVLSMLAGV--TqndfvglrsgltlkwveqV----------------------------------------------------- 53 
                   3334444444444333222222..12244444444444444442..................................................... PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlll 168
                                                                    + +ys +  +++l+++++ ll+
    EHT99644.1  54 -------------------------------------------------WDMYSDTF-WLSLMIAVSCLLV 74 
                   .................................................33333333.3333333333333 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 4.1e-17
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfv..laillvlvfvilsilghlilpviillllsaapyvrlirraalrslp.kdlveaaralGas 93 
                   ++G+ aa   l++ ++++  +  +  ++ +lP +   l+i+l+     +s+l +++  ++i  +l+++p++++ + a++++++   l+eaa  lGa+
    EHT99644.1  77 VVGVPAAwglLKSPSRWSSRIEECLMLPVALPGLTtaLGIILL--YGQFSGLRDSWVFILIGHVLFTLPFMIRPVLAVMQAIQlPRLEEAAASLGAG 171
                   6788888888899999999999999*********955555555..58*********************************998457*********** PP

  BPD_transp_1  94 rwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadilqrlldpr 182
                    wq+f++vv+Pn    i++g++++ ++++g++ ++ +l +  +l+ +l   +  +  s+ +    +++l++++++l+l+l +++ + +l++ 
    EHT99644.1 172 FWQRFFTVVVPNCRNGILAGAFMVTTLSVGEFNITWMLHT--PLTKTLPVGLADSYASMRLevgSAYTLIFILMILPLLLMLNACNHWLERQ 261
                   ***********************************99994..47777777666666666667777999999999999999999999999986 PP

>> Bac_export_3  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.2      0.18     8e+02      55      69 ..      16      30 ..       4      35 .. 0.43
   2 ?   12.6   0.6   2.1e-05     0.095       2      29 ..      53      80 ..      52      83 .. 0.93
   3 ?   -4.2   0.8       3.7   1.7e+04      18      29 ..     103     114 ..     100     119 .. 0.46
   4 ?   -1.8   0.4      0.67     3e+03      58      70 ..     138     150 ..     131     156 .. 0.58
   5 ?   -2.9   0.1       1.5   6.5e+03      69      69 ..     198     198 ..     188     214 .. 0.51
   6 ?    0.7   0.1      0.11   4.9e+02      44      64 ..     237     257 ..     230     263 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.18
  Bac_export_3 55 llvllllgpwmletl 69
                  l +l+++ p++l++l
    EHT99644.1 16 LTALFIIVPVVLSML 30
                  222222222222222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.1e-05
  Bac_export_3  2 vidlarealllvlllsaplllvalvvGl 29
                  v d+ +++++l l++++ +llv++vvG+
    EHT99644.1 53 VWDMYSDTFWLSLMIAVSCLLVTMVVGV 80
                  78999**********************7 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 3.7
  Bac_export_3  18 aplllvalvvGl 29 
                   +p+ l++l + l
    EHT99644.1 103 LPVALPGLTTAL 114
                   444444444444 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.67
  Bac_export_3  58 llllgpwmletlv 70 
                   +l+++p+m++ ++
    EHT99644.1 138 VLFTLPFMIRPVL 150
                   4566666665544 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 1.5
  Bac_export_3  69 l 69 
                   l
    EHT99644.1 198 L 198
                   2 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.11
  Bac_export_3  44 TLsfvpKllavllvllllgpw 64 
                   TL f+  +l  ll+l  + +w
    EHT99644.1 237 TLIFILMILPLLLMLNACNHW 257
                   666666666666666666666 PP

>> Mannosyl_trans4  DolP-mannose mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.7    0.0013       5.8      40      80 ..      13      53 ..       5      83 .. 0.75
   2 ?    6.2   0.4    0.0019       8.3     107     129 ..     156     180 ..     107     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
  Mannosyl_trans4 40 vltilaaialvllvsliaseitGddiaallaGlallvlPel 80
                     + t++a  ++v +v  +   +t +d+++l +Gl+l  + ++
       EHT99644.1 13 ITTLTALFIIVPVVLSMLAGVTQNDFVGLRSGLTLKWVEQV 53
                     44555556667777788899*************99766655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0019
  Mannosyl_trans4 107 rdkPilsGvaaaasaGsWq..sgii 129
                       + P l  +aa++ aG Wq  ++++
       EHT99644.1 156 IQLPRLEEAAASLGAGFWQrfFTVV 180
                      45689999**********9333444 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.4    0.0026        12       7      35 ..       3      31 ..       1      42 [. 0.81
   2 ?   -2.5   0.1       1.5   6.6e+03      17      28 ..      66      77 ..      60      94 .. 0.61
   3 ?    3.0   0.0     0.028   1.2e+02      19      34 ..     237     252 ..     233     265 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0026
  Sigma_reg_N  7 akrksilrivlislivlllifvilvvtll 35
                 ++   +l+i++++l++l++i+++ ++ l+
   EHT99644.1  3 RRGLFWLQIAITTLTALFIIVPVVLSMLA 31
                 555679****************9966655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
  Sigma_reg_N 17 lislivlllifv 28
                 +i+++ ll+ +v
   EHT99644.1 66 MIAVSCLLVTMV 77
                 333444443333 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.028
  Sigma_reg_N  19 slivlllifvilvvtl 34 
                  +li++l+i+++l++++
   EHT99644.1 237 TLIFILMILPLLLMLN 252
                  89*********96654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2041.80
//
Query:       EHT99645.1  [L=293]
Description: permease component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-17   62.0  12.3    6.1e-17   62.0  12.3    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   3.0      0.13   2.4e+03      38      55 ..      41      85 ..      25      99 .. 0.42
   2 !   62.0  12.3   3.4e-21   6.1e-17       2     175 ..      97     284 ..      96     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.13
  BPD_transp_1 38 llvlvf...........................vilsilghlilp 55
                  +++l f                           +++s + +  l+
    EHT99645.1 41 FWLLPFarlfqmgmtpdrstrhsgywtvitqpqYLQSLFNTVLLS 85
                  222222444444455555555555555555553333333333333 PP

  == domain 2  score: 62.0 bits;  conditional E-value: 3.4e-21
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.............vilsilg.hlilpviillllsaapyvrlirraalrslpkdlv 84 
                    ++G ++a ++++ ++  l+ l  ++l++P +v+++l+v+++             v+  +   ++ ++++i +l++++p ++++  aa + l+++l+
    EHT99645.1  97 SVVGCFLA-RQRFAGRGTLLALLTFPLAFPGVVVGFLVVMLAgrqgvlaqismqlVHERWTLaYSLTGLFIGYLYFSLPRAIVTLVAASEKLDRSLE 192
                   589*****.999***************************999************94444444266677***************************** PP

  BPD_transp_1  85 eaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlvadil 175
                   eaar lGas w+i++ v++P ++p ++++ +l f+ ++g++  + +l ++  l+ +l  +i g  +++++    ++++++++++ +l + +a++l
    EHT99645.1 193 EAARSLGASQWRIICDVIVPGLKPALLSSGALCFATSMGAFGTAFTLDTD--LS-VLPLTIYGEFTNYANfataAALSVVMGAVAWLGLMLARVL 284
                   **************************************999888777744..33.4444444444444444555577777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1995.18
//
Query:       EHT99646.1  [L=341]
Description: LacI family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-27   95.3   1.1    6.6e-27   94.9   0.2    1.7  2  Peripla_BP_3  Periplasmic binding protein-like domain
    2.5e-25   89.4   0.2    3.3e-25   89.1   0.2    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    4.8e-09   36.2   0.0    1.1e-08   35.0   0.0    1.6  1  Peripla_BP_4  Periplasmic binding protein domain
      5e-07   29.4   0.0    2.4e-06   27.2   0.0    2.2  2  LacI          Bacterial regulatory proteins, lacI family
    0.00047   19.9   0.1    0.00079   19.2   0.1    1.3  1  Peripla_BP_6  Periplasmic binding protein
  ------ inclusion threshold ------
       0.02   14.3   0.0      0.031   13.7   0.0    1.2  1  VRP1          Salmonella virulence plasmid 28.1kDa A protein


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   5.6e+03      65      90 ..     111     132 ..      66     141 .. 0.46
   2 !   94.9   0.2   2.2e-30   6.6e-27       1     143 [.     169     306 ..     169     323 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
                   ...HHHHHCC-SE.EEEESSCCHHHHHH CS
  Peripla_BP_3  65 ll.qalklaalPt.AviaasDelAlgvl 90 
                   +l q++         v+  sD+   +vl
    EHT99646.1 111 MLrQRV------AgMVLTVSDADSSAVL 132
                   222332......2123335555555555 PP

  == domain 2  score: 94.9 bits;  conditional E-value: 2.2e-30
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-S.EEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalP.tAviaasDelAlgvlqalrea 96 
                   ++hL++lGhr+i++++g+  + +  +++r+ g+++a++++g+++ + v ++ + +a  ++   l+     +++ P tAvi+ +D lA+ ++ a+++a
    EHT99646.1 169 TAHLIALGHRHIVMAAGPMLQ-SDRARQRYLGYCDAMQQAGFTPSALVDMPSHIHALFDPFLPLM-----TGSDPlTAVICSNDLLAISLMGAAARA 259
                   57**************66665.78899**********************9999998888888773.....3335669******************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldl 143
                   g+ vP++lsv+gfd++++ + +sP+l +v qp e+lG +a+++lld 
    EHT99646.1 260 GINVPQQLSVMGFDGIAIGEQLSPSLASVVQPSERLGACAIDMLLDS 306
                   ***************9999*************************985 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.2   1.1e-28   3.3e-25       2     257 ..      60     305 ..      59     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.1e-28
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts.fdditakaesgipvialedaidapdgvP 96 
                    +lg++lp+l++P f+  +++++  a+  g+ +l+  ++++++ + + ++ ++ +++ g++++ sd + +  +   ae+ +p++++ +  ++  +  
    EHT99646.1  60 TTLGVLLPSLSNPVFALQLQAMEHQARLAGYGLLVATTDYQPEREaAIVEHMLRQRVAGMVLTVSDADsSAVLPTLAEARMPFVLAHNMPQNT-AWR 155
                   589******************************************77889*************5555515555566666**********8888.99* PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTS.HHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-.TT-SEEE-SSHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesal.takervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh.Peidaivaindea 191
                   +v  d+ +a +e+t +Lia gh+  i++ +gp  ++  a++r  G+++a+++aG+      +    ++i++ ++    l+    P   a+++ nd  
    EHT99646.1 156 SVCVDNRRAMAEATAHLIALGHRH-IVMAAGPMLQSdRARQRYLGYCDAMQQAGF--TPSALVDMPSHIHALFDPFLPLMTGSdPL-TAVICSNDLL 248
                   ************************.*999***999988999999***********..55555555679999999888888777686.8********* PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlq 257
                   a+  + a+  +G ++ +++      sv+++dg+  a    l  s++ v q   e lG  a dm+l+
    EHT99646.1 249 AISLMGAAARAG-INVPQQL-----SVMGFDGI--AIGEQLSPSLASVVQPS-ERLGACAIDMLLD 305
                   ***999999999.*******.....********..99999988888888866.999****999987 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   3.7e-12   1.1e-08       2     251 ..      63     304 ..      62     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.7e-12
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   gv++++ snp f    +++e +a+ +g+ + +v+ ++ + ++++a++e ++ + v g ++++ d++  a +l ++++a +p+v       p++    
    EHT99646.1  63 GVLLPSLSNPVFALQLQAMEHQARLAGY-GLLVATTDYQPEREAAIVEHMLRQRVAGMVLTVSDADSSA-VLPTLAEARMPFVLAHNM--PQNTAWR 155
                   899*******999899999999998888.55569**********************9999988876555.888888888**8887777..8****** PP

                   EEEC-HHHH.HHHHHHHHHHHCTTH.EEEEEETS.CCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHH....TTTECEEEE CS
  Peripla_BP_4  99 yvgfdneaa.GelqaeylaeklggkkgkvvilaG.spgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqaleallt....anpldgila 189
                    v+ dn  a +e+ a ++a     +   +v+ aG ++++  a++r+ g  +++++  g++  a      + ++      + +l      +pl ++++
    EHT99646.1 156 SVCVDNRRAmAEATAHLIA----LGHRHIVMAAGpMLQSDRARQRYLGYCDAMQQ-AGFTPSA----LVDMPSHIHALFDPFLPlmtgSDPLTAVIC 243
                   ******9652555555554....33346777766155577788************.5555555....346777777777777777766668****** PP

                   SSCCHHHCHHHHHHHTTT.TSTEE.EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHH CS
  Peripla_BP_4 190 andgmaegalealeaagl.agkvv.vtgqDatpealeaikdGtidatvaqdpyelgyaavelav 251
                    nd  a+  + a + ag+  ++++ v+g+D+     ++  +    a+v+q++  lg+ a+++++
    EHT99646.1 244 SNDLLAISLMGAAARAGInVPQQLsVMGFDGIAIGEQLSPSL---ASVVQPSERLGACAIDMLL 304
                   ******************7555557*****998777764333...3777777777777777775 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   8.1e-10   2.4e-06       5      46 .]       7      48 ..       4      48 .. 0.99
   2 ?   -3.1   0.0       2.4   7.3e+03      37      46 .]     203     212 ..     202     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 8.1e-10
                HHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  5 VArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                VA++AGVS aT+ r  +++   +  t ++V+ a e l+++Pn
  EHT99646.1  7 VAERAGVSRATAARAFSDPHLLKPGTLKKVLDASEALGFRPN 48
                9****************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
                 HHHHTTB-TT CS
        LacI  37 ameelnYiPn 46 
                 am++ +++P+
  EHT99646.1 203 AMQQAGFTPS 212
                 89*****996 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.7e-07   0.00079      48     224 ..      95     269 ..      89     291 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.7e-07
                   EE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEES CS
  Peripla_BP_6  48 rDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggkkvalvyad 144
                   + + y+p+r a+ ++++++ + v++ v ++s+a+ +av+++la+++ p++ +   +  +++ +  ++  + +a+a+a++ +l+  lg + +++ +  
    EHT99646.1  95 ATTDYQPEREAAIVEHMLR-QRVAGMVLTVSDADSSAVLPTLAEARMPFVLA--HNMPQNTAWRSVCVDNRRAMAEATA-HLIA-LGHRHIVMAAGP 186
                   55789**************.8888888889********************96..3333444444444444455555555.5777.788888877644 PP

                   .SHHHHHHHH..HHHHHHHCCTEEEEEEEEE-TTH.HHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEEC CS
  Peripla_BP_6 145 .yafgregia..alkaaakaaGgevvgeepvplgt.tdfsaqvlqikaagadavllagtgadlaallkaaaeaGldakrillvs 224
                     ++ r+ ++  ++ +a+++aG++  + ++ p    + f++++  +  + + + ++++    +++l+ aaa+aG++ + ++l  
    EHT99646.1 187 mLQSDRARQRylGYCDAMQQAGFTPSALVDMPSHIhALFDPFLPLMTGSDPLTAVICSNDLLAISLMGAAARAGINVP-QQLSV 269
                   244444444444778999999999545555664446889999999999999884444444559999999999998864.33333 PP

>> VRP1  Salmonella virulence plasmid 28.1kDa A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     1e-05     0.031     173     223 ..     104     155 ..      90     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
        VRP1 173 alsivndvLsksaraiidqtgeae.kpvnkvLaetRyPftLPYslpqqqink 223
                    iv ++L +++  ++ ++++a+ ++v  +Lae R Pf L  ++pq+   +
  EHT99646.1 104 EAAIVEHMLRQRVAGMVLTVSDADsSAVLPTLAEARMPFVLAHNMPQNTAWR 155
                 5679********************89999*****************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2502.44
//
Query:       EHT99647.1  [L=201]
Description: hypothetical protein CKS_1713 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-10   40.7   0.0    3.6e-10   40.2   0.0    1.1  1  DrsE      DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     2e-14   3.6e-10       2     115 ..      75     199 ..      74     201 .] 0.90

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2e-14
                 EEEEEE-S-TTTBSHHHHHHHHHHHHHTTT...........-EEEEEE-GGGGGGGBS..---TGGGTS---GGGGGGCGGGT-EEEEEHHHHHHTT-- CS
        DrsE   2 kvfilvtggpygseaarealelalaaaalg...........hevsvffygdGvllllk..gqtanpadeknlaellkalkeygvklyvCgqaakargld 87 
                  vf +++    g+   r +l l ++a+ ++           + ++v +  d+v ++l+  + +++   ++++ +l++al+++gvk+ +C q+++ ++ +
  EHT99647.1  75 IVFQINR--SEGDI-RRPNLGLERVARVTNlyyaagvpldkLNFVVSINSDAVPAALNneQFHKAYGVDNPNLQLISALEKAGVKVSICDQSVAFHHFE 170
                 5677777..44777.89999*******************999999*************88888888899999*************************** PP

                 GGGE-..T--EEEE-HHHHHHHHHH-SEEE CS
        DrsE  88 ededl..gvgvevsglgelaelqnegdrvi 115
                   +++   v+ ++s+ +++a+lqn+g++ +
  EHT99647.1 171 -RDWIdtRVTHTISSGTTVATLQNQGYAFL 199
                 .77887788******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1510.20
//
Query:       EHT99648.1  [L=487]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-27   95.0   0.2    8.6e-27   94.2   0.2    1.4  1  Peptidase_M48    Peptidase family M48
    4.4e-10   39.9  12.5    4.3e-07   30.3   2.1    4.1  5  TPR_19           Tetratricopeptide repeat
    8.4e-05   22.7   3.9      0.014   15.6   0.4    3.4  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    0.00014   22.3  11.6       0.29   12.1   0.2    5.3  4  TPR_14           Tetratricopeptide repeat
    0.00076   19.4   1.4        1.4    9.2   0.1    4.8  4  TPR_2            Tetratricopeptide repeat
     0.0051   17.4   1.4        6.1    7.7   0.0    4.4  4  TPR_6            Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   15.8   1.8        0.4   10.9   0.1    2.9  2  TPR_9            Tetratricopeptide repeat
       0.04   14.0   0.0       0.15   12.2   0.0    2.0  1  Fis1_TPR_C       Fis1 C-terminal tetratricopeptide repeat
      0.065   13.5   2.4        0.1   12.9   0.5    2.3  2  DUF4157          Domain of unknown function (DUF4157)
       0.15   12.8  11.5        1.6    9.5   1.1    4.8  4  TPR_16           Tetratricopeptide repeat
       0.18   11.7   3.8       0.23   11.4   0.4    2.4  2  Wzy_C_2          Virulence factor membrane-bound polymerase, 
       0.18   11.0   0.1       0.36   10.0   0.1    1.4  1  Mononeg_mRNAcap  Mononegavirales mRNA-capping region V
        1.8    9.1   7.9         40    4.9   0.1    4.4  3  TPR_17           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.2   6.2e-30   8.6e-27       2     195 ..      71     259 ..      70     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 6.2e-30
                    --SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   2 lreaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllg 97 
                    l ++++++  ++l++ a++ k + +++ +++++ NAFa  gg    +vl+ +L+  + +e++la V++HE++H+++rh ++ +  +  +  l  +g
     EHT99648.1  71 LLNQYINQLGQRLVSHADAVKTPFHFFLIQNDELNAFAFFGG---NVVLHAALFRFTDTESQLASVMAHEISHVTQRHLARAMEDQKRNAPLTWVG 163
                    67899*************************************...9********9999**************************999999999999 PP

                    HHHHTT-SHHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHHS-SS--HHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  98 lallisraeedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsellstHPplleRiqalk 193
                    ++  i  a +  ++++++ +++l+g  + +  + ++ ++E +AD++g+++l+ra+ +++a+ ++ ++l+ q++++s+  e+l tHP   +R++ ++
     EHT99648.1 164 ALGSILLAMASPQAGMAALTGTLAGTQQGI--ISFTQNNEQEADRIGIQVLQRAGFNPQAMPDFLQKLADQSRFSSKPPEILLTHPLPDSRLADAR 257
                    988887777777777777777777766654..69***********************************************************998 PP

                    H- CS
                    xx RF
  Peptidase_M48 194 el 195
                    ++
     EHT99648.1 258 NR 259
                    76 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0041       5.6      24      62 ..     308     344 ..     294     352 .. 0.77
   2 !   19.0   0.2   1.1e-06    0.0015       2      54 ..     320     372 ..     319     376 .. 0.94
   3 !   30.3   2.1   3.2e-10   4.3e-07       5      67 ..     357     418 ..     353     419 .. 0.96
   4 !    7.9   2.4    0.0031       4.3       9      56 ..     411     458 ..     410     474 .. 0.83
   5 ?    4.9   0.8     0.027        37       4      22 ..     440     458 ..     437     486 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0041
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddarya 62 
                 +++ r++ A   l+++++ eA++++ +l++++p   +++
  EHT99648.1 308 QLASRYGKAVQFLQAKNYGEAKRIVTPLLAKQPE--NVW 344
                 7777888888889999999999999999999887..444 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.1e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 l++++y eA ++ + +l++ p+n +++ l+ ++ + l+q+++A+alL a +++
  EHT99648.1 320 LQAKNYGEAKRIVTPLLAKQPENVWLLDLMTDIDIGLNQPQQAIALLTATQAA 372
                 899********************************************998776 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 3.2e-10
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 +++++A+all++  q++  ++ ++l+LA+a+++++q++ A ++L+++    +dd ++++LlA+
  EHT99648.1 357 NQPQQAIALLTAT-QAAKTSPVVQLNLANAYVEAKQPANASRILNRYTWTHKDDTNAWDLLAQ 418
                 699*********6.99999*******************************************9 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0031
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +A +ll+qa ++  + +e + + Ae l  +gq+++A+ +L+++ ++ p
  EHT99648.1 411 NAWDLLAQASAQQGHTDEELFARAESLALNGQIAQAISALSQASAQVP 458
                 57789999999999955555559*****************99998876 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.027
      TPR_19   4 egdyaeAlalleqalqedp 22 
                 +g+ a+A+++l+qa ++ p
  EHT99648.1 440 NGQIAQAISALSQASAQVP 458
                 7999999999999976643 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.056        78      20      79 ..     306     366 ..     291     369 .. 0.65
   2 !   15.6   0.4   9.9e-06     0.014       7      74 ..     361     428 ..     356     432 .. 0.84
   3 !    6.2   0.0    0.0087        12      22      49 ..     426     453 ..     423     467 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.056
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 +e + ++y +A  ++++++y +A +++ ++  +++++   + l+    + L++ ++Aia+L
  EHT99648.1 306 REQLASRYGKAVQFLQAKNYGEAKRIVTPLlAKQPENVWLLDLMTDIDIGLNQPQQAIALL 366
                 4556667777888888888888888888884444444444444555555667777777776 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHH CS
      ANAPC3   7 nAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyee 74 
                  Ai l+   + a + sp   + lA ++ +++q   A ++l+++ ++ + + +++ l+Aq++ ++++ +e
  EHT99648.1 361 QAIALLTATQ-AAKTSPVVQLNLANAYVEAKQPANASRILNRYtWTHKDDTNAWDLLAQASAQQGHTDE 428
                 5555555555.445666666778******************************************9998 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0087
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  22 spedayllAlclylngqykrAyellrka 49 
                  +e +++ A++l lngq  +A+  l++a
  EHT99648.1 426 TDEELFARAESLALNGQIAQAISALSQA 453
                 57889999*****************998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.023        32       7      41 ..     315     349 ..     308     352 .. 0.84
   2 ?    1.4   0.0      0.56   7.8e+02      15      42 ..     357     383 ..     354     384 .. 0.82
   3 !   12.1   0.2   0.00021      0.29       4      43 ..     379     418 ..     376     419 .. 0.92
   4 !    8.3   0.5    0.0033       4.6       3      32 ..     429     458 ..     427     471 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlll 41 
                  a  +l++ ++ eA ++   +la++P++ +++ l+
  EHT99648.1 315 KAVQFLQAKNYGEAKRIVTPLLAKQPENVWLLDLM 349
                 456699**********************9988766 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.56
      TPR_14  15 GdpdeAiallrralalaPddaeawllla 42 
                  +p++Aiall +  ++a ++++++l la
  EHT99648.1 357 NQPQQAIALLTAT-QAAKTSPVVQLNLA 383
                 6899999988776.77999999999887 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00021
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +l la a+ ++ +p+ A ++l+r+  ++ dd  aw llaq
  EHT99648.1 379 QLNLANAYVEAKQPANASRILNRYTWTHKDDTNAWDLLAQ 418
                 6779********************889************9 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0033
      TPR_14   3 allalaeallalGdpdeAiallrralalaP 32 
                  l a+ae l+ +G+ ++Ai +l +a a+ P
  EHT99648.1 429 ELFARAESLALNGQIAQAISALSQASAQVP 458
                 6789*********************99877 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.53   7.3e+02       5      22 ..     313     330 ..     311     342 .. 0.81
   2 ?    1.8   0.0      0.23   3.2e+02       5      21 ..     380     396 ..     376     401 .. 0.83
   3 ?    2.4   0.0      0.15   2.1e+02       3      19 ..     412     428 ..     410     428 .. 0.91
   4 !    9.2   0.1   0.00099       1.4       2      28 ..     428     454 ..     427     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.53
       TPR_2   5 ynlGlayyklgdyeeAle 22 
                 y  +   +++++y eA++
  EHT99648.1 313 YGKAVQFLQAKNYGEAKR 330
                 55677789999**99986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.23
       TPR_2   5 ynlGlayyklgdyeeAl 21 
                  nl++ay ++++++ A 
  EHT99648.1 380 LNLANAYVEAKQPANAS 396
                 69**********99986 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.15
       TPR_2   3 alynlGlayyklgdyee 19 
                 a+  l++a +++g+ +e
  EHT99648.1 412 AWDLLAQASAQQGHTDE 428
                 89***********9887 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00099
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 e l++++++++ +g+ ++A+ a+ +A 
  EHT99648.1 428 EELFARAESLALNGQIAQAISALSQAS 454
                 679********************9995 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.3   7.3e+03       8      13 ..     317     322 ..     304     342 .. 0.63
   2 ?   -2.0   0.0       5.4   7.5e+03      14      24 ..     357     367 ..     344     369 .. 0.83
   3 !    7.7   0.0    0.0045       6.1       2      27 ..     378     403 ..     377     408 .. 0.89
   4 ?    5.0   0.1     0.033        45       3      26 ..     430     453 ..     430     458 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.3
                 HHHHHH CS
       TPR_6   8 lsyrkl 13 
                   ++++
  EHT99648.1 317 VQFLQA 322
                 333333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.4
                 HHHHHHHHHHH CS
       TPR_6  14 gdtdkAleale 24 
                 +++++A+++l 
  EHT99648.1 357 NQPQQAIALLT 367
                 79999*99885 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 ++++la +y +++++++A ++l+r  
  EHT99648.1 378 VQLNLANAYVEAKQPANASRILNRYT 403
                 589********99*********9975 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerl 26 
                 l+ +a+s+   g+ ++A+ al + 
  EHT99648.1 430 LFARAESLALNGQIAQAISALSQA 453
                 678899***989********9886 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00029       0.4       1      49 [.     382     430 ..     382     432 .. 0.93
   2 ?    4.8   0.2     0.023        31      30      69 ..     428     475 ..     426     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
       TPR_9   1 lkaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAl 49 
                 l +++ ++++ + a ++++r  + + dd   +   +++ aq+G++ ++l
  EHT99648.1 382 LANAYVEAKQPANASRILNRYTWTHKDDTNAWDLLAQASAQQGHTDEEL 430
                 56899***************************************98876 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.023
       TPR_9  30 eerrdRGlllaqlGclsaAladLeaylalap........dapdaeair 69 
                 ee++ R+  la  G++++A+ +L ++ a+ p         ++ ++++r
  EHT99648.1 428 EELFARAESLALNGQIAQAISALSQASAQVPlgslkqarYDARIDQLR 475
                 588999*********************999977776655555555555 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.15      14      35 ..     322     343 ..     313     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                 HT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPenr 35 
                  ++Y eA+r v  lL+++Pen 
  EHT99648.1 322 AKNYGEAKRIVTPLLAKQPENV 343
                 69******************95 PP

>> DUF4157  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   7.3e-05       0.1      34      75 ..     102     144 ..      99     148 .. 0.74
   2 ?   -2.8   0.1       5.7   7.9e+03      32      58 ..     179     205 ..     174     212 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.3e-05
     DUF4157  34 ralgAqAfTlgndivfaag..eyqpesaagrellaHELtHvvqq 75 
                 ++l+A Af +g ++v+ a   ++  ++++ ++++aHE++Hv q+
  EHT99648.1 102 DELNAFAF-FGGNVVLHAAlfRFTDTESQLASVMAHEISHVTQR 144
                 67788888.77777775552256667777789**********97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.7
     DUF4157  32 aaralgAqAfTlgndivfaageyqpes 58 
                 +a+  g+ A T++  i f +++ q++ 
  EHT99648.1 179 MAALTGTLAGTQQGIISFTQNNEQEAD 205
                 566677889999999999776665554 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21   2.9e+02       7      32 ..     319     341 ..     310     343 .. 0.84
   2 ?    1.3   0.0       0.4   5.5e+02      10      27 ..     356     373 ..     351     379 .. 0.74
   3 ?    9.5   1.1    0.0011       1.6       1      54 [.     380     430 ..     380     437 .. 0.93
   4 ?    3.3   0.5     0.099   1.4e+02       2      29 ..     432     459 ..     431     469 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
      TPR_16   7 alragdyddAaaaleaalkrdpssPd 32 
                 +l+a++y +A +  + +l+++   P+
  EHT99648.1 319 FLQAKNYGEAKRIVTPLLAKQ---PE 341
                 79999******9999999999...76 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.4
      TPR_16  10 agdyddAaaaleaalkrd 27 
                 ++++++A+a+l+a+ ++ 
  EHT99648.1 356 LNQPQQAIALLTATQAAK 373
                 6899*******7666654 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0011
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 l+la+a+++a++++ A + l++++  +    d+  A+ ll++a ++qg  +e +
  EHT99648.1 380 LNLANAYVEAKQPANASRILNRYTWTH---KDDTNAWDLLAQASAQQGHTDEEL 430
                 789************************...99999*************999986 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.099
      TPR_16   2 alaraalragdyddAaaaleaalkrdps 29 
                 a+a +++ +g+ ++A+ al +a ++ p 
  EHT99648.1 432 ARAESLALNGQIAQAISALSQASAQVPL 459
                 6677777788999999999999888844 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00017      0.23     130     182 ..     365     415 ..     336     421 .. 0.81
   2 ?    0.6   0.2      0.33   4.5e+02     150     174 ..     434     458 ..     429     471 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
     Wzy_C_2 130 lalarklihlsPepavierlilslallGdedeAeqilararalfpeedakwvq 182
                 l  a +++++sP   v  +l+ +++ + +++ A +il r+ + + ++  +w  
  EHT99648.1 365 LLTATQAAKTSP--VVQLNLANAYVEAKQPANASRILNRYTWTHKDDTNAWDL 415
                 444556666665..6899*********************************44 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.33
     Wzy_C_2 150 ilslallGdedeAeqilararalfp 174
                 ++slal+G+ ++A   l++a a+ p
  EHT99648.1 434 AESLALNGQIAQAISALSQASAQVP 458
                 799***************9998766 PP

>> Mononeg_mRNAcap  Mononegavirales mRNA-capping region V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00026      0.36      87     144 ..     373     430 ..     351     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00026
                      SS-----S-SS-SS-S--HHHHHHHHHHHTTTTT-TTT-HHHHHHHHHHHHHS----. CS
  Mononeg_mRNAcap  87 kTkekveaelakvkkasaalkeAirlasvltwavgedselakliikllssrvnldlee 144
                      kT+  v+ +la+++ +++   +A r+ +++tw  ++d + + l++++  +   +d e 
       EHT99648.1 373 KTSPVVQLNLANAYVEAKQPANASRILNRYTWTHKDDTNAWDLLAQASAQQGHTDEEL 430
                      789999999999999999999***********************99988888777664 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.029        40       3      32 ..     366     395 ..     364     397 .. 0.84
   2 ?    3.9   0.1     0.062        85       9      31 ..     406     428 ..     405     431 .. 0.89
   3 ?    2.6   0.1      0.15   2.1e+02      16      33 ..     430     447 ..     428     448 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.029
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtA 32 
                 l a +  ++++++  nLA+++ ++++++ A
  EHT99648.1 366 LTATQAAKTSPVVQLNLANAYVEAKQPANA 395
                 56677778999***********99998766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.062
      TPR_17   9 dPnnadaynnLAelllknGdlmt 31 
                 ++++ +a+ +LA++ +++G +++
  EHT99648.1 406 HKDDTNAWDLLAQASAQQGHTDE 428
                 57899**************9987 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                 ++ +Ae l+ nG+ ++A+
  EHT99648.1 430 LFARAESLALNGQIAQAI 447
                 6889***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3620.02
//
Query:       EHT99649.1  [L=115]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-20   70.9   0.1    7.3e-20   70.8   0.1    1.1  1  ArsC          ArsC family
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.051   13.8   0.0    1.9  2  Glutaredoxin  Glutaredoxin
      0.047   14.2   0.0       0.25   11.8   0.0    1.8  1  DUF1687       Protein of unknown function (DUF1687)


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   1.2e-23   7.3e-20       1      64 []       5     114 ..       5     114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.2e-23
                 EE-TT..............................................GCB-TTSHHHHHCTCCCTTSBHHHHHHHHHH-GGGB-S-EEEESSEEE CS
                 xxxxx..............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ArsC   1 Ygspn..............................................ellskrgttyreLnldkedlsedellelilenpsLirRPivvdgkrlq 53 
                 Y++p+                                              +l+++++ ty  L ld+  lse++ll++++enp+Li+RPiv+ g+r++
  EHT99649.1   5 YHNPRcsksretlalleqrgiqpvivryletppdkatlqillqklgmesarQLMRRNEPTYTALALDQAALSESALLDAMVENPILIERPIVINGDRAR 103
                 99999999999999999999999999999999999**************************************************************** PP

                 ESSSCCGGGGG CS
                 xxxxxxxxxxx RF
        ArsC  54 iGfneeeiraf 64 
                 +G+++e+++a+
  EHT99649.1 104 LGRPPEAVLAI 114
                 *******9986 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.6e-06     0.051       1      39 [.       2      40 ..       2      50 .. 0.82
   2 ?   -0.4   0.0      0.24   1.4e+03      15      35 ..      54      74 ..      52      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.6e-06
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHH CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeire 39
                  v+l+  p+C  ++ + +lL+++g++  ++  ++ +  ++
    EHT99649.1  2 VTLYHNPRCSKSRETLALLEQRGIQPVIVRYLETPPDKA 40
                  899*********************988877666665555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.24
                  HHHHHHHTTGGEEEEEGCCSH CS
  Glutaredoxin 15 akrlLkelgvkfeeidvdkde 35
                  a++l++++   ++   +d+ +
    EHT99649.1 54 ARQLMRRNEPTYTALALDQAA 74
                  899999999999888888764 PP

>> DUF1687  Protein of unknown function (DUF1687)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.2e-05      0.25      11     119 ..       2      98 ..       1     106 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
     DUF1687  11 itlFhnakspaSnkllklLkkasakasekakedqereefelevtekfPTlDQlktilsyvgkskaksvlksafpelseilkkfkkdeeskkklkelvke 109
                 +tl+hn+  ++S + l+lL++   +               +   e++P    l+++l+++g+++a++ +++  p+++ +   +     ++  l+ +v++
  EHT99649.1   2 VTLYHNPRCSKSRETLALLEQRGIQP------------VIVRYLETPPDKATLQILLQKLGMESARQLMRRNEPTYTALALDQAAL-SESALLDAMVEN 87 
                 9*******************987765............778889999999999999999999999999999999888776666655.344445555555 PP

     DUF1687 110 dlFk.rplvVD 119
                  +   rp+v+ 
  EHT99649.1  88 PILIeRPIVIN 98 
                 55444777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 867.28
//
Query:       EHT99650.1  [L=167]
Description: chromosomal replication initiator protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-14   52.9   0.0    5.4e-14   52.6   0.0    1.0  1  Bac_DnaA  Bacterial dnaA  protein


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0     3e-18   5.4e-14      97     213 ..      29     146 ..      22     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 3e-18
                 T-SEEEEE-GGGGTT-HHHHHHHHHHHHHHHTT.T-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHH CS
    Bac_DnaA  97 kvDvLliDDiqflagkektqeelfhtfnallee.gkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefi 194
                 ++ ++ iD+i+ +ag e  +  +f ++n +le+ + +++++ Dr+P++l+     l sr+++G +  ++p   e +l+ l+ ++   ++e+pe+v +f+
  EHT99650.1  29 QLPLVCIDNIECIAGEEAWEMAIFNLYNRILETgNTRLFITGDRPPRQLNLHLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAGLRGFELPEDVGRFL 127
                 566789***********************99983579*************99999******************************************** PP

                 HHH--S-HHHHHHHHHHHH CS
    Bac_DnaA 195 aervtdnvRelegalnrlk 213
                  +r+++++R l  +l rl 
  EHT99650.1 128 LKRLDREMRTLFDTLDRLD 146
                 ***********99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1224.54
//
Query:       EHT99651.1  [L=429]
Description: uracil transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-107  359.9  41.1   1.8e-107  359.4  41.1    1.2  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.41   10.6   0.0    1.7  1  DUF5463          Family of unknown function (DUF5463)


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.4  41.1    2e-111  1.8e-107       2     387 ..      16     383 ..      15     385 .. 0.98

  Alignments for each domain:
  == domain 1  score: 359.4 bits;  conditional E-value: 2e-111
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH..HHHGGG-....HHHHHHHHH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvt..almialGsaedieialagll 93 
                      q++ l+lQhl+amf+a+v+vP+l++ +          +++ ll++G++tll+l+i+++++p++lgssfaf++  +l++ lG    +e+al+g++
       EHT99651.1  16 QTIPLSLQHLFAMFGATVLVPILFHIN----------PATVLLFNGVGTLLYLFICKGKIPAYLGSSFAFISpvLLLLPLG----YEVALGGFI 95 
                      899************************..........99*********************************999999999....9******** PP

                      HHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHH CS
  Xan_ur_permease  94 gallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpi 187
                      ++++++++++++++++g++ +l  ++pP  +g++v +iGl+la +a++++g+++a  eg    ++ ++l+++v+l+v++  sv+++g+++ +pi
       EHT99651.1  96 LCGVLFCLVALIVKKAGTG-WLDVMFPPAAMGAIVAVIGLELAGVAANMAGLLPA--EG-HAPDGTTVLISLVTLAVTVFGSVLFRGFMAIIPI 185
                      ******************5.**********************************5..55.669******************************* PP

                      HHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHHHHHHHHHHHHH CS
  Xan_ur_permease 188 LigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlrralladGlatl 281
                      Lig+++g++l++fmgiv+  + v++apwf lp    f tp f++ ++lt+l+ alv+++e+vG++ ++a++v+r+l ++p+l+r+++a+Gl+t+
       EHT99651.1 186 LIGVLVGYALSAFMGIVDWRG-VENAPWFALP---TFYTPRFEWVAMLTILPAALVVIAEHVGHLVVTANIVKRDLVRDPGLHRSMFANGLSTV 275
                      *********************.*********8...899999***************************************************** PP

                      HHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-..SHHHHHHH CS
  Xan_ur_permease 282 lsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdld..sarnlliv 373
                      +sg++G++p+tty+eniGv+a+t+v+s++v+  a++++ill++++klaa +++IP pv+gGv+l+++g+i asg++ l+++++d  +a+nl+++
       EHT99651.1 276 ISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQAIPVPVMGGVSLLLYGVIGASGIRVLIESKVDynKAQNLILT 369
                      ************************************************************************************99******** PP

                      HHHHHHHHH----- CS
  Xan_ur_permease 374 avslvlGlgvatvp 387
                      +v+l++G++ a+v+
       EHT99651.1 370 SVILIIGVSGAKVH 383
                      *********99876 PP

>> DUF5463  Family of unknown function (DUF5463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.6e-05      0.41      10      24 ..     173     187 ..     168     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.6e-05
     DUF5463  10 tvLFRRWmAiiCCLi 24 
                  vLFR +mAii  Li
  EHT99651.1 173 SVLFRGFMAIIPILI 187
                 69*********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2966.07
//
Query:       EHT99652.1  [L=208]
Description: uracil phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-65  218.6   0.0    6.7e-65  218.4   0.0    1.0  1  UPRTase         Uracil phosphoribosyltransferase
    2.3e-13   50.0   0.3    3.4e-13   49.4   0.3    1.2  1  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.052   13.6   0.0      0.084   12.9   0.0    1.3  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.4   0.0   1.1e-68   6.7e-65       3     207 .]       7     207 ..       4     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 218.4 bits;  conditional E-value: 1.1e-68
     UPRTase   3 shpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglqr 101
                 +hpl+k+kl ++R++++s+k+frel+++++ ll++ea+++ l++e+vt++   g  +  +++ + ki++VpilRaG+gm+e+++e +p+ar+  +g++r
  EHT99652.1   7 KHPLVKHKLGLMREHDISTKRFRELASEVGSLLTYEATAE-LETEKVTIEGWNGPVQVDQIKGK-KITVVPILRAGLGMMEGVLEHVPSARISVVGVYR 103
                 8***************************************.**************999998886.********************************** PP

     UPRTase 102 eeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlGDf 200
                 +eetlepv y++kL ++i+er +l++Dp++aTGgs++a i+lLk++g   ++I vl ++a++eg+++l +++p+v+++ta+vD++l++kgyi+pGlGD+
  EHT99652.1 104 DEETLEPVPYFQKLVSNIEERLALVVDPMLATGGSMIATIDLLKKAG--CSSIKVLVLVAAPEGIAALEKAHPDVELYTASVDQGLNDKGYIIPGLGDA 200
                 *********************************************55..589*********************************************** PP

     UPRTase 201 GDRlFgT 207
                 GD++FgT
  EHT99652.1 201 GDKIFGT 207
                 ******9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.3   5.7e-17   3.4e-13      25     130 ..      65     166 ..      62     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 5.7e-17
                   E--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEE CS
  Pribosyltran  25 eyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevria 121
                   +++gk+ +vv+i+r G+ +   +  ++      v  v +++++ e ++  +    +l ++++ +  l+VD +l+tGg+++a+++lLk++g+ ++++ 
    EHT99652.1  65 QIKGKKITVVPILRAGLGMMEGVLEHVPSARISVVGVYRDEETLEPVP-YFQ---KLVSNIEERLALVVDPMLATGGSMIATIDLLKKAGCSSIKVL 157
                   6789**********************9555555555544444444443.333...39**************************************** PP

                   EEEE-HHHH CS
  Pribosyltran 122 vlvdkpate 130
                   vlv+ p++ 
    EHT99652.1 158 VLVAAPEGI 166
                   ***999875 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.4e-05     0.084      76     118 ..     116     158 ..     105     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
                     -EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEE CS
  Pribosyl_synth  76 tvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvla 118
                     ++v +++ r+a++vd ++    s++a+ ++lk+ G   i vl+
      EHT99652.1 116 KLVSNIEERLALVVDPMLATGGSMIATIDLLKKAGCSSIKVLV 158
                     58999******************************87776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1506.62
//
Query:       EHT99653.1  [L=346]
Description: phosphoribosylaminoimidazole synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-38  132.5   0.0    2.2e-38  131.8   0.0    1.3  1  AIRS_C    AIR synthase related protein, C-terminal domain
    1.8e-15   57.3   0.7    3.3e-15   56.5   0.7    1.5  1  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   2.5e-42   2.2e-38       1     154 [.     176     342 ..     176     344 .. 0.94

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 2.5e-42
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT.....TSEHHHHHHHHHHHHHHHHHHHH.HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECG. CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeegldds.....avqlgdvlleptliyvkralaal.kglvkaahDvTgGGLlgalaemapasgvgaeidld. 92 
                 ++Gdvli +gs+G +++g+sl+rkile +g+d       +++l+d+ll pt+iyvk +l ++ + +v+a++++TgGG+++++++++p++  +a+id++ 
  EHT99653.1 176 QDGDVLIALGSSGPHSNGYSLVRKILEVSGTDPLveqleGKPLADHLLAPTRIYVKNILSLIeQVDVHAIAHLTGGGFWENIPRVLPDN-TQAVIDEKs 273
                 68****************************9988****8899**********************************************8.********* PP

                 ..THHHHHHHH.....HHHHHHHCSTTTEEEEEEEHGGH.HHHHHHHHHTTCCCEEEEEEEEESSSEEEE CS
      AIRS_C  93 ..kvpifdele.....splemllsensGrllvavppeea.davlaileeeglpeaavIGevtakeelsvi 154
                   ++ +f + +     s++em++++n+G++++++ ++++ d+++++++++g+ +a+ IG + a+++++ +
  EHT99653.1 274 wqWPALFGWMQqagnvSRHEMYRTFNCGVGMIIALSPADaDKAVDLMRAAGE-NAWKIGVINASDSEERV 342
                 *********99*****************988766555555************.8********99987765 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.7   3.7e-19   3.3e-15      15      94 .]      58     164 ..      17     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 3.7e-19
                 EECCTCCCC................HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEEEEEESS......EEE CS
        AIRS  15 pvlvepvhf................iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGdtsfsne......pti 86 
                 pvlv+++++                iG  +va++++Dl++ GA+Pl++l+++a +     ++++v++g+ae++ + g++lvgG+t+++++      + +
  EHT99653.1  58 PVLVSGTDGvgtklrlamdlkrhdaIGIDLVAMCVNDLVVQGAEPLFFLDYYATGkldvdTASAVITGIAEGCLQSGCALVGGETAEMPGmyhgedYDV 156
                 4555555555555555555566667*************************************************************999999999999* PP

                 EEEEEEEE CS
        AIRS  87 svtavGlv 94 
                 + ++vG+v
  EHT99653.1 157 AGFCVGVV 164
                 *****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2753.83
//
Query:       EHT99654.1  [L=212]
Description: phosphoribosylglycinamide formyltransferase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-64  217.3   0.0    1.5e-64  217.1   0.0    1.0  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.0   8.2e-69   1.5e-64       1     181 []       2     182 ..       2     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 8.2e-69
                     -EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---HH CS
  Formyl_trans_N   1 kkivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpke 95 
                     kk+vvlisg+gsnlq +lda+ +g ++++v++v+snk+ a+gl +a++a+ip+k++++ +++ r  f+++l +e++++++dl+vlagym++l++ 
      EHT99654.1   2 KKLVVLISGNGSNLQSILDACANGRIHGSVAAVFSNKASAYGLVRAQEAGIPAKALDARDFNDRDSFDRQLMREIDAYAPDLVVLAGYMRILSPG 96 
                     699******************************************************************************************** PP

                     HHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  96 lvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                     +v++++ ++lniHpSLLP+++G++++++ale+Gdke+G+++hfv++elD G++++q++v+++aed++ e+++rv+++eh +++ ++
      EHT99654.1  97 FVAHYSDRLLNIHPSLLPKYPGLHTHRQALENGDKEHGTSVHFVTDELDGGPVILQARVPVFAEDSEAEITERVQHQEHAIYPLVI 182
                     **********************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1558.92
//
Query:       EHT99655.1  [L=257]
Description: ATP-binding component of an ABC superfamily phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-32  110.7   0.0    1.1e-31  110.2   0.0    1.2  1  ABC_tran     ABC transporter
    6.2e-11   42.7   0.5    0.00024   21.0   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.5e-06   27.3   0.0      2e-05   24.9   0.0    2.1  1  AAA_22       AAA domain
    6.9e-05   23.3   0.6    0.00039   20.8   0.6    2.0  1  AAA_16       AAA ATPase domain
    0.00017   21.1   0.1     0.0073   15.8   0.1    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00028   20.8   0.0    0.00061   19.7   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
    0.00043   20.9   0.0    0.00083   19.9   0.0    1.4  1  AAA_23       AAA domain
    0.00052   19.7   0.0     0.0014   18.3   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
    0.00071   19.4   0.0     0.0023   17.7   0.0    1.5  2  AAA_15       AAA ATPase domain
    0.00099   19.1   0.0     0.0017   18.3   0.0    1.3  1  Rad17        Rad17 P-loop domain
  ------ inclusion threshold ------
      0.012   15.3   0.1       0.88    9.3   0.0    2.1  2  AAA_30       AAA domain
      0.016   15.4   0.0      0.028   14.6   0.0    1.8  1  AAA_33       AAA domain
      0.027   14.5   0.1       0.51   10.3   0.0    2.5  2  AAA_5        AAA domain (dynein-related subfamily)
      0.033   13.8   0.1       0.11   12.1   0.0    1.8  2  AAA_25       AAA domain
      0.036   13.5   0.1       0.35   10.2   0.0    2.3  2  TniB         Bacterial TniB protein
      0.048   14.1   0.0        1.6    9.2   0.0    2.4  2  AAA          ATPase family associated with various cellular a
      0.049   12.4   0.0        8.2    5.1   0.0    2.3  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.058   13.1   0.0        0.6    9.8   0.0    2.1  2  AAA_24       AAA domain
       0.17   10.7   0.1        0.4    9.4   0.0    1.6  2  Adeno_IVa2   Adenovirus IVa2 protein
       0.18   12.4   0.0       0.57   10.7   0.0    1.8  2  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   1.2e-34   1.1e-31       1     137 []      26     182 ..      26     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.2e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren............. 79 
                 l++vsl+l +++++a++G++G+GKStLl+++ ++ +       eG+illd++++ +  q+ + lr+++g+++q p+ fp++ v+en             
  EHT99655.1  26 LQDVSLQLPKNRITALIGPSGCGKSTLLRCFNRMNDVidrcrIEGDILLDQQSIMRpaQDVSALRRRVGMVFQRPNPFPKS-VYENvvyglrlqgvrdk 123
                 789*******************************99999999*************99************************.***********998776 PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    +e +e+al+   l +  ++ + +++ +LS Gq+qr+++ara++ +p++lllDEpt+
  EHT99655.1 124 rVLNEACERALRAAALWGEVKDQLAQNALTLSTGQQQRLVIARAIAIEPDVLLLDEPTS 182
                 6666669999999999999999999********************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.7e-07   0.00024       1      26 [.      38      65 ..      38      91 .. 0.81
   2 !   20.1   0.5   5.1e-07   0.00046     225     298 ..     142     211 ..      78     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.7e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl..d 26
                +++liGp g+GKS+LL+++  + ++  +
  EHT99655.1 38 ITALIGPSGCGKSTLLRCFNRMNDVidR 65
                79*****************999877652 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 5.1e-07
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHS 298
                 e +d    +a  lS G+++   +++  ++  +  ++ll+DEp + L+P  +++l+  el++ l++    ++l+TH+
  EHT99655.1 142 EVKDQLAQNALTLSTGQQQR-LVIARAIAIEP--DVLLLDEPTSALDP--ISTLVieELMSTLRQ-HFTLVLVTHN 211
                 55666667777889999999.66666665555..9*************..555555444455544.899******8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-08     2e-05       5      91 ..      36     139 ..      34     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.2e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee........................erpevvfvtlpsstsskdllrellralglelkaerlsseell 79 
                  +i++++G+sG+GK+tllr + + +d  ++  +                        +r+  + ++ p++  +k+++++++  l l++ +   +++ l 
  EHT99655.1  36 NRITALIGPSGCGKSTLLRCFNRMNDV-ID--RcriegdilldqqsimrpaqdvsalRRRVGMVFQRPNPF-PKSVYENVVYGLRLQGVR---DKRVLN 127
                 5799********************974.33..244789999999999999977775433333377777777.999999999999999999...555555 PP

      AAA_22  80 ealeqalrarav 91 
                 ea+e+alra+a 
  EHT99655.1 128 EACERALRAAAL 139
                 555555555543 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.6   4.3e-07   0.00039      16      46 ..      26      58 ..      22     222 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.3e-07
      AAA_16 16 lervrsgrp..elvllsGesGvGKsslvrellr 46
                l++v+ + p  +++ l+G+sG+GKs+l+r++ r
  EHT99655.1 26 LQDVSLQLPknRITALIGPSGCGKSTLLRCFNR 58
                55555555566999****************996 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   8.1e-06    0.0073      23     208 ..      35     221 ..      25     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.1e-06
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC..CCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSC..EEEEEEEETTSEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrsekl..sdlihkskekasvkkaeveitfdnedkklkiekee..vsisrrvkrkgeseykingke 117
                 ++++ta++Gp G+GKs ll     +    +   +  + l  ++ i + ++  s+ + +v ++f+ ++   k   e+  + ++ + +r+++   +  ++ 
  EHT99655.1  35 KNRITALIGPSGCGKSTLLRCFNRMNDVIDRCRIEGDILldQQSIMRPAQDVSALRRRVGMVFQRPNPFPKSVYENvvYGLRLQGVRDKRVLNEACERA 133
                 5679**************998844333333333444433223334446888888899999999999987444444411556666666666444444455 PP

                 E-H....HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                 xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtk....kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208
                  +      ev+++l++  +   +LS G+++ + +a  +Ai+   p  + llDe  +aLD   +  + el+ + ++++ ++ ++++ ++ ++++  
  EHT99655.1 134 LRAaalwGEVKDQLAQNAL---TLSTGQQQRLVIARAIAIE---PD-VLLLDEPTSALDPISTLVIEELMSTLRQHFTLVLVTHNMQQASRVSDY 221
                 5551112444555555444...69****9988888887775...44.5689***********************999999999998887776554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.7e-07   0.00061      86     120 ..      22      57 ..       6      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.7e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinall 120
                  +++ l++++ +l + ++++l+G+SG GKStL+  ++
   EHT99655.1  22 ERQVLQDVSLQLPKnRITALIGPSGCGKSTLLRCFN 57 
                  566777787777666****************98765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.3e-07   0.00083      11      39 ..      27      56 ..      21      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 9.3e-07
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAi 39
                +d+++++ ++ +t+++Gp G+GK+T+l+++
  EHT99655.1 27 QDVSLQLpKNRITALIGPSGCGKSTLLRCF 56
                67777777889*****************98 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.6e-06    0.0014      15      39 ..      29      53 ..      19      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.6e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 ++++  + +t l+GpsG GKSTll
  EHT99655.1 29 VSLQLPKNRITALIGPSGCGKSTLL 53
                4556665559**************8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.6e-06    0.0023      14      49 ..      26      62 ..      24      86 .. 0.86
   2 ?   -1.6   0.0       1.8   1.7e+03     299     364 ..     156     210 ..     118     215 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.6e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnn 49
                l+dv+++l ++ +t liG+ ++GKS++l+ ++ + + 
  EHT99655.1 26 LQDVSLQLPKNrITALIGPSGCGKSTLLRCFNRMNDV 62
                789999999999******************9998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
      AAA_15 299 sGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +G+q+ l+++  ++ a+       ++++ll++EP   L p   + +i+ l + +++++  +++ TH
  EHT99655.1 156 TGQQQRLVIA--RAIAI-------EPDVLLLDEPTSALDPI-STLVIEELMSTLRQHF-TLVLVTH 210
                 4555544443..22222.......33666666665555543.3455555555556665.5666666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.8e-06    0.0017      33      66 ..      24      57 ..       4      70 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLs 66
                + l+  +L+  k+ri  + GPsGCgkst ++   
  EHT99655.1 24 QVLQDVSLQLPKNRITALIGPSGCGKSTLLRCFN 57
                6778888999999****************99766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00098      0.88      17      40 ..      35      58 ..      26      65 .. 0.86
   2 ?    3.7   0.4     0.051        46      50     130 ..     135     216 ..     118     227 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00098
      AAA_30 17 gdrvavltGpAGtGKttalkalre 40
                ++r+++l Gp G GK+t+l+  ++
  EHT99655.1 35 KNRITALIGPSGCGKSTLLRCFNR 58
                46799**************97765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.051
      AAA_30  50 iglAptgkaAkvLae.elgieastiakllkrlkgrarlepg.tllivDEagmv....dtkqlaallkaaekagakvilvGDerQlas 130
                  ++A  g++ ++La+ +l + +   ++l+    +r +++ + ++l+ DE   +    +t  +++l++ +++ + +++lv  + Q as
  EHT99655.1 135 RAAALWGEVKDQLAQnALTLSTGQQQRLVI---AR-AIAIEpDVLLLDEPTSAldpiSTLVIEELMSTLRQ-HFTLVLVTHNMQQAS 216
                 455555555555543122334444444442...22.23333399*****988878889***********99.889999988888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.1e-05     0.028       3      33 ..      40      88 ..      38     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.1e-05
      AAA_33  3 llvGlpGsGKstlaerllkklg...avllssdt...............l 33
                 l+G++G+GKstl++   + ++    ++++ d+               +
  EHT99655.1 40 ALIGPSGCGKSTLLRCFNRMNDvidRCRIEGDIlldqqsimrpaqdvsA 88
                589************9988888888888888884444444444444441 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00057      0.51       4      21 ..      41      58 ..      39      68 .. 0.88
   2 ?    1.4   0.2      0.33   2.9e+02      79      89 ..     189     199 ..     108     242 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
                EE--SSSSHHHHHHHGGG CS
       AAA_5  4 LvGppGtgKselaerlaa 21
                L+Gp+G+gKs+l + + +
  EHT99655.1 41 LIGPSGCGKSTLLRCFNR 58
                9***********987765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.33
                 HHHHHHHHHHH CS
       AAA_5  79 sevlnsLlsll 89 
                 + v+++L+s l
  EHT99655.1 189 TLVIEELMSTL 199
                 33333333333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.11      30      50 ..      33      53 ..      23      56 .. 0.91
   2 ?   -1.5   0.1       1.7   1.5e+03     123     123 ..     185     185 ..     124     240 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_25 30 lpagelallaGapgtGKttla 50
                lp++ +++l+G++g+GK+tl+
  EHT99655.1 33 LPKNRITALIGPSGCGKSTLL 53
                7999***************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.7
      AAA_25 123 g 123
                 +
  EHT99655.1 185 D 185
                 1 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0004      0.35      37      62 ..      38      63 ..      24     135 .. 0.88
   2 ?    1.0   0.0      0.26   2.4e+02      92     132 ..     145     184 ..     121     203 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
        TniB 37 nlllvGdsnnGKtmivekFarlhppe 62
                   l+G+s +GK+++++ F r++   
  EHT99655.1 38 ITALIGPSGCGKSTLLRCFNRMNDVI 63
                5689****************998765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
        TniB  92 ealgaplkararvskleqqvlrllrelkvrvLiiDEihnll 132
                 ++l +++  + ++ ++++ v++   ++++ vL++DE  ++l
  EHT99655.1 145 DQLAQNA-LTLSTGQQQRLVIARAIAIEPDVLLLDEPTSAL 184
                 5555543.5556777888888888899999******87776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0017       1.6       3      18 ..      41      56 ..      39     101 .. 0.79
   2 ?    2.4   0.0      0.21   1.9e+02      42      70 ..     156     183 ..     132     218 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0017
                EESSTTSSHHHHHHHH CS
         AAA  3 lyGppGtGKTllakav 18
                l+Gp G+GK++l +  
  EHT99655.1 41 LIGPSGCGKSTLLRCF 56
                89*********99865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHTSTSEEEEEETGGGH CS
         AAA  42 sekkirelfkeakekakpsilfiDEidal 70 
                 + ++ r ++++a +  +p +l++DE  + 
  EHT99655.1 156 TGQQQRLVIARAIAI-EPDVLLLDEPTSA 183
                 556666777666555.5999999996554 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0091       8.2     242     265 ..      33      57 ..      29      65 .. 0.85
   2 ?    5.0   0.1    0.0099       8.9     331     354 ..     162     185 ..     148     242 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0091
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 +pk  +t+++G+   GKsTLL+  +
  EHT99655.1  33 LPKNrITALIGPSGCGKSTLLRCFN 57 
                 56666****************9765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0099
                 HHHHHHHHTT-SEEEEEGGGS-HH CS
  ABC_ATPase 331 animealeagakllLiDEDtsAtN 354
                   i++a+ ++ ++lL+DE tsA  
  EHT99655.1 162 LVIARAIAIEPDVLLLDEPTSALD 185
                 57999*****************75 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00067       0.6       4      24 ..      38      57 ..      35      65 .. 0.83
   2 ?    1.1   0.0      0.31   2.8e+02     100     131 ..     135     169 ..     116     241 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00067
      AAA_24  4 kiliyGpsgiGKTtlakelgp 24
                  +++Gpsg GK+tl++ + +
  EHT99655.1 38 ITALIGPSGCGKSTLLRCF-N 57
                5689***********9988.4 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.31
      AAA_24 100 dgkG.ygelaeefrrllkklqelrk..nvifiahe 131
                 ++++ +ge+++++ +   +l+  ++   vi+ a +
  EHT99655.1 135 RAAAlWGEVKDQLAQNALTLSTGQQqrLVIARAIA 169
                 44555555555555544444444443222222222 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00045       0.4      80     107 ..      30      56 ..      22      83 .. 0.80
   2 ?   -2.3   0.0       1.6   1.5e+03     235     250 ..     202     217 ..     188     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00045
  Adeno_IVa2  80 slnyglqPviGviyGPtGsGksqllrnl 107
                 sl + ++ +   + GP G+Gks llr +
  EHT99655.1  30 SLQLPKNRIT-ALIGPSGCGKSTLLRCF 56 
                 5555555554.556************75 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
  Adeno_IVa2 235 gfsvlvvlhnlnPrsd 250
                  f++++v hn++  s 
  EHT99655.1 202 HFTLVLVTHNMQQASR 217
                 5888888999987665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00064      0.57       3      25 ..      41      66 ..      40      99 .. 0.73
   2 ?   -1.4   0.0       3.6   3.2e+03      41      41 ..     178     178 ..     121     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00064
      AAA_18  3 ltGtpGvGKttlakeLskrlgf...g 25
                l G++G+GK+tl +  ++++ +    
  EHT99655.1 41 LIGPSGCGKSTLLRCFNRMNDVidrC 66
                89***********9999987333332 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
      AAA_18  41 v 41 
                 +
  EHT99655.1 178 D 178
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 1784.37
//
Query:       EHT99656.1  [L=544]
Description: putative periplasmic phosphate-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-18   66.8  14.0    1.9e-18   66.8  14.0    2.8  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.49   10.6   0.1    2.1  1  MLTD_N        MltD lipid attachment motif
       0.12   12.5   2.0       0.24   11.6   2.0    1.4  1  DUF4055       Domain of unknown function (DUF4055)
       0.13   12.5   0.0       0.13   12.5   0.0    2.3  3  DUF3333       Domain of unknown function (DUF3333)
       0.15   11.6   1.2       0.23   11.0   1.2    1.2  1  G6PD_bact     Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.4
       0.19   10.9   4.5        4.1    6.5   0.1    3.2  3  DUF3413       Domain of unknown function (DUF3413)
        2.8    8.5   5.5        8.7    6.9   0.0    3.7  4  DUF3357       Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       0.2     5e+02     121     151 ..      21      51 ..      12      56 .. 0.76
   2 ?   -2.2   0.1       1.2   2.9e+03     157     171 ..     295     309 ..     273     311 .. 0.57
   3 !   66.8  14.0   7.6e-22   1.9e-18       3     184 ..     312     540 ..     310     541 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
  BPD_transp_1 121 llggavlleflgswpGlgtllleailgydys 151
                    l +++ll  l++w+Gl  ++ ++   y+++
    EHT99656.1  21 CLLAFTLLIALLGWQGLRAFWPHPVDLYQFT 51 
                   4667777777788999999999998888887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
  BPD_transp_1 157 gvlalviavlllnlv 171
                   +++ +v++vll+++v
    EHT99656.1 295 AIFGTVLMVLLMSVV 309
                   333334444444444 PP

  == domain 3  score: 66.8 bits;  conditional E-value: 7.6e-22
  BPD_transp_1   3 llGilaa.....lnrnkkldkllrpliivllslPsfvlaillvlvf................vilsilg.hlilpviillllsaapyvrlirraalr 77 
                   +lG++aa     ++ ++ l++l+r+ +  l ++Ps+v +++ + +f                     +g  + l++ ++l+l ++p+v++ ++++l+
    EHT99656.1 312 PLGVIAAlwlheYAERNALTRLVRIAVVNLAGVPSIVYGVFGLGFFvwlvggtvdqlfysstLPAPTFGtPGLLWASLTLALLTLPVVIVATEEGLS 408
                   89*******99**************************77776655566688*********994444455234555888899999************* PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.................... 154
                    +p++l++ ++alGa+  +++++vvlP+a+p+++tglila++++ g+++ l ++g    +  ++ e      +++                      
    EHT99656.1 409 RIPDSLRQGSLALGATQAETLWNVVLPMAVPTMLTGLILAVARAAGETAPLMLVG----VVKMVPELPVDAVFPYLHldrkfmhlgfqiydlafqsp 501
                   *******************************************************....88888888888888877788999999999999999999 PP

  BPD_transp_1 155 .........nggvlalviavlllnlvadilqrlldprvr 184
                            ++++l lv+++lllnl+a+ l   l  r r
    EHT99656.1 502 nteadrplvFATALLLVLIILLLNLLAMGLRHRLRERYR 540
                   999*************************99998887765 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00019      0.49      12      27 ..     328     343 ..     325     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
      MLTD_N  12 dALtRavqisalaaaa 27 
                  ALtR+v+i+++ +a+
  EHT99656.1 328 NALTRLVRIAVVNLAG 343
                 6***********9886 PP

>> DUF4055  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.0   9.2e-05      0.24      30     126 ..     131     226 ..     125     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.2e-05
     DUF4055  30 llvltGleeekelaiGsgsaielpdgaa.akyveasgeaiaagkealdrlekqmaalGarlleektateTatqaaieaeaenSvLallasnledaldq 126
                   +++Gl+ee+ +  +   +  l+++ + +k +e ++  +   + ++ rl++q+ +l  +   +++a++ + qa+ e ea++++L+    +l+d l++
  EHT99656.1 131 YGWFVGLREENDVLTAKDIMALLQQRLEqVKLIEQQASEMR--RVDIARLNEQLDQLDDQAEHQRAAKQFDLQAQSEYEANQAALQRRLLQLNDRLNS 226
                 56899999988888777777777777666********9999..*****************999************************99999999875 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-05      0.13       9      51 ..       5      47 ..       2      51 .. 0.92
   2 ?   -3.1   0.3       3.2   8.1e+03      58      83 ..     180     204 ..     170     241 .. 0.49
   3 ?   -4.8   1.9         7   1.8e+04      26      41 ..     516     531 ..     513     532 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
     DUF3333  9 aaErrFrlyGiaAialallfLviLlvsIvskGltAFtqteitl 51
                ++  r r++   A+++ ll+  +L++ +  +Gl+AF+ + + l
  EHT99656.1  5 RQNDRWRWLTAGAVTVCLLAFTLLIALLGWQGLRAFWPHPVDL 47
                57789********************************988765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.2
     DUF3333  58 eeidpkgkaeeskklatanyeklird 83 
                 e++d+ + ++++++ a  +++  +++
  EHT99656.1 180 EQLDQLD-DQAEHQRAAKQFDLQAQS 204
                 4444444.222222222223322222 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 7
     DUF3333  26 llfLviLlvsIvskGl 41 
                 ll+L+iLl+++++ Gl
  EHT99656.1 516 LLVLIILLLNLLAMGL 531
                 6899999999998886 PP

>> G6PD_bact  Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.2   8.9e-05      0.23      87     180 ..     144     237 ..     131     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.9e-05
   G6PD_bact  87 nsaailsvllnkkqlqvyldfqhYksdrrqisvaeynqllakleeWlekld.ladfeiWekeeseyddflalaeylsdkekqkelkkeaeedsfl 180
                  +a  +  ll+++  qv l  q   s+ r++ +a  n+ l++l++ +e+   +++f++  ++e e ++    +++l+ +++ ++l+ e+++d+ +
  EHT99656.1 144 LTAKDIMALLQQRLEQVKLIEQ-QASEMRRVDIARLNEQLDQLDDQAEHQRaAKQFDLQAQSEYEANQAALQRRLLQLNDRLNSLQAESQRDALI 237
                 455556789999999**99866.589******************9999988689***********988877777888888888888888877655 PP

>> DUF3413  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.021        53     131     157 ..      12      38 ..       2      46 .. 0.84
   2 ?    1.5   0.1     0.054   1.4e+02     110     169 ..     270     338 ..     266     353 .. 0.61
   3 ?    6.5   0.1    0.0016       4.1     109     150 ..     487     530 ..     479     543 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.021
     DUF3413 131 wllllilvlvilllelllanlvwkklr 157
                 wl+  ++++ +l+++ll+a l w+ lr
  EHT99656.1  12 WLTAGAVTVCLLAFTLLIALLGWQGLR 38 
                 99999******************9986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.054
     DUF3413 110 HLnpvvlelllngeqselsss.........wllllilvlvilllelllanlvwkklrklkrkklgkpva 169
                 H  + v++++ ++  +  s++         +l++l++ +v++ l +++a ++++ +++   ++l+++++
  EHT99656.1 270 HFCQQVWRFISDSPAEGESEFgvfpaifgtVLMVLLMSVVVMPLGVIAALWLHEYAERNALTRLVRIAV 338
                 666777777776543333333455776665566666666666677777777777775544455555544 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0016
     DUF3413 109 lHLnpvvlelllngeqselsss..wllllilvlvilllelllan 150
                 +HL + + +l++++ ++e  +   +++ l+lvl+illl+ll++ 
  EHT99656.1 487 MHLGFQIYDLAFQSPNTEADRPlvFATALLLVLIILLLNLLAMG 530
                 9******************9996666667777777777766544 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.19   4.8e+02      18      45 ..       8      34 ..       2      77 .. 0.82
   2 ?   -0.4   0.2      0.61   1.6e+03      23      50 ..     300     327 ..     281     342 .. 0.61
   3 ?   -2.0   0.1       1.9     5e+03       6       6 ..     411     411 ..     383     459 .. 0.53
   4 ?    6.9   0.0    0.0034       8.7      13      50 ..     499     536 ..     494     543 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.19
     DUF3357 18 rarrpllaavliasalvvlvvlvalagv 45
                 ++r  l+a ++++ l+++ +l+al g 
  EHT99656.1  8 DRWR-WLTAGAVTVCLLAFTLLIALLGW 34
                5677.77888889999999999999886 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.61
     DUF3357  23 llaavliasalvvlvvlvalagvrlagq 50 
                 +l ++l+ ++++ l v++al   ++a++
  EHT99656.1 300 VLMVLLMSVVVMPLGVIAALWLHEYAER 327
                 3444444445555555555554455555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.9
     DUF3357   6 P 6  
                 P
  EHT99656.1 411 P 411
                 2 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0034
     DUF3357  13 aaaaararrpllaavliasalvvlvvlvalagvrlagq 50 
                 +++ ++a+rpl  a++++ +l++l++ + ++g+r+  +
  EHT99656.1 499 QSPNTEADRPLVFATALLLVLIILLLNLLAMGLRHRLR 536
                 678999*****************999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1323  (0.0737911); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4094.80
//
Query:       EHT99657.1  [L=698]
Description: phosphate transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-13   50.4  18.2    2.1e-13   50.4  18.2    3.2  3  BPD_transp_1  Binding-protein-dependent transport system inne
     0.0061   16.4   0.1      0.018   14.9   0.1    1.8  1  DUF3261       Protein of unknown function (DUF3261)
  ------ inclusion threshold ------
        4.3    7.8   8.9         14    6.2   0.7    3.1  2  DUF3262       Protein of unknown function (DUF3262)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.065   3.9e+02      17      53 ..      19      48 ..      10      70 .. 0.60
   2 !    5.0   4.9    0.0031        18       7      66 ..     429     492 ..     419     498 .. 0.74
   3 !   50.4  18.2   3.5e-17   2.1e-13      24     180 ..     506     688 ..     484     693 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.065
  BPD_transp_1 17 dkllrpliivllslPsfvlaillvlvfvilsilghli 53
                  d+  r+l+    ++ +++l++ll+++      l + +
    EHT99657.1 19 DRYTRRLVT-CCGVAILLLMMLLFFW------LLWVV 48
                  555555544.4455566666666633......33333 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0031
  BPD_transp_1   7 laalnrnkkldkllrpliivllslPsfvlaillvlvf...vilsilghlilp.viillllsaap 66 
                   ++a ++   l++++ p i+++ +lPs+v++++  l++   v +   g l lp  ++ +ll+ ++
    EHT99657.1 429 YTAWFMAPGLRRWVKPAIEMMGALPSVVIGLIAGLWLaphVGQALTGILLLPvTLAGSLLGCGI 492
                   44444446799*********************88887788888888888888555555555555 PP

  == domain 3  score: 50.4 bits;  conditional E-value: 3.5e-17
  BPD_transp_1  24 iivllslPsfvlaillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppi 110
                    +v+l lP+++++  l+l++           +  +++   l +++++ + ++p+++ + ++al s+p +l + ++alGa++wq++ +vvlP a   i
    EHT99657.1 506 HEVILLLPVLLIVAALTLWLptlivpdagdWLPHYAQRNLLIAALAMGFALVPMIFTLAEDALFSVPASLGQGSLALGATPWQTLTRVVLPGASAGI 602
                   579999********************9996666667777777888888999999999999************************************* PP

  BPD_transp_1 111 itglilafggllggavlleflgswpG.......lgtllleailgydyseis.........nggvlalviavlllnlvadilqrlld 180
                   ++ l++ fg+++g++++l++ +++++        g+++l+a+++  ++e++         + ++l+l++++l +n+va ++ + l 
    EHT99657.1 603 FAALMIGFGRAVGETMILLMATGNTPqtegglfSGLRTLSANIAIEMPEAAvgsahyrilFLSALVLLVFTLMINTVAELIRQRLR 688
                   **********************99999*99999899999999999999999*****777666667777777777777766666554 PP

>> DUF3261  Protein of unknown function (DUF3261)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     3e-06     0.018      19      67 ..     164     208 ..     156     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3e-06
     DUF3261  19 avleldpeqlrlaglsplGqrlftlsydgqeleversrrlPdqlkaeqv 67 
                 av +l+p+q+r+a+l+++G++l+tl+   q   + + ++l +   a+ v
  EHT99657.1 164 AVATLRPDQWRIAALTDAGVSLLTLETNRQAALI-QLPGLQP---AHLV 208
                 7899**********************99988877.3333333...5555 PP

>> DUF3262  Protein of unknown function (DUF3262)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   2.0     0.011        63      25      46 ..      33      54 ..      25      66 .. 0.78
   2 ?    6.2   0.7    0.0023        14      14      62 ..     407     456 ..     405     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.011
     DUF3262 25 agillvvllLwaaWalvsvYkg 46
                + +l+++l++w+ W+++  + +
  EHT99657.1 33 ILLLMMLLFFWLLWVVLPLFSA 54
                5678899999****99877765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0023
     DUF3262  14 G.vspsalklliagillvvllLwaaWalvsvYkgWaeekiseadllslvi 62 
                 G +++++++ll+a  l+  + + +aW +    ++W +  i+++ +l +v+
  EHT99657.1 407 GtLKAASMALLFATPLALAAAMYTAWFMAPGLRRWVKPAIEMMGALPSVV 456
                 5578999******************************9999998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5164.43
//
Query:       EHT99658.1  [L=686]
Description: polyphosphate kinase, component of RNA degradosome [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-73  245.2   0.2      4e-73  244.5   0.2    1.4  1  PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
    9.6e-69  230.3   3.0    1.9e-68  229.3   0.9    2.1  2  PP_kinase_C    Polyphosphate kinase C-terminal domain 2
    1.7e-45  155.1   0.3    2.9e-45  154.4   0.3    1.4  1  PP_kinase      Polyphosphate kinase middle domain
    5.5e-32  110.3   0.7    5.5e-32  110.3   0.7    2.0  2  PP_kinase_N    Polyphosphate kinase N-terminal domain
    3.6e-16   59.3   0.9    1.1e-09   38.3   0.2    3.1  2  PLDc_2         PLD-like domain
  ------ inclusion threshold ------
      0.039   14.5   0.1       0.25   11.9   0.0    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.5   0.2   1.3e-76     4e-73       3     165 ..     331     493 ..     329     495 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.5 bits;  conditional E-value: 1.3e-76
                    HHHHHHS-EEEECTTB-SCHHHHHHHHHHC-TTEEEEEEEES-S-S--HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-EEEE- CS
  PP_kinase_C_1   3 feairkkdillhhPyesfesvvelleeAaedpkvlaikitlYrvakdskivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvkvvyg 98 
                    f+air++d+ll++Py++fe+v+ell++A+ dp+vlaiki++Yrvak+s+i++a+i+Aa ngk+vtv+vEl+Arfdee+Ni wak+l+eagv+v+++
     EHT99658.1 331 FDAIRNRDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKHSRIMDAMIHAAYNGKKVTVVVELQARFDEEANIYWAKRLTEAGVHVIFS 426
                    89********************************************************************************************** PP

                    -TT--B--EEEEEEE---S---EEEEEESS-SS---SS-EEEEEEEE--HHHHHHHHHHHHHHTT-- CS
  PP_kinase_C_1  99 vvglkvhaklllvvrreeeklrryvhlgtGnynektaklYtDlslltadeelgedveklfnvltgks 165
                     +glk+hakl+l+ rre+e++ ry+h+gtGn+nekta+lYtD+slltad +++++v+++fn++++ +
     EHT99658.1 427 APGLKIHAKLFLISRREGEEIVRYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPY 493
                    ***************************************************************9876 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14   4.3e+02      39      62 ..     376     399 ..     353     423 .. 0.72
   2 !  229.3   0.9   6.3e-72   1.9e-68       1     172 []     501     672 ..     501     672 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
  PP_kinase_C  39 edkeiidkLyeAsqaGVkiklivr 62 
                  + ++i+d++++A+  G k++++v 
   EHT99658.1 376 KHSRIMDAMIHAAYNGKKVTVVVE 399
                  456788888888888888888874 PP

  == domain 2  score: 229.3 bits;  conditional E-value: 6.3e-72
  PP_kinase_C   1 LlvaplnlrekllelidreieaakagkkakiilklNsledkeiidkLyeAsqaGVkiklivrgicclrpgvkglsenikvisivdrfLEhaRiyifen 98 
                  L+v+p+n r+ l++lid+ei++a++ +++ i+lk+N+l+dk ++d+Ly As++GV+++l+vrg+c+l+p+ +g+seni+visivdrfLEh R+yifen
   EHT99658.1 501 LMVSPQNSRRMLYDLIDNEIANAQQKRPSGITLKINNLVDKGLVDRLYTASSVGVNVNLLVRGMCSLIPDLPGISENIRVISIVDRFLEHDRVYIFEN 598
                  89************************************************************************************************ PP

  PP_kinase_C  99 ggeeevyisSaDlmtRnldrRvevlvpvedeklkkelkeilelqlkDnvkareldedgeykkvkekeekkvraQ 172
                  gg+++v++sSaD+mtRn+d R+ev+v ++d+++k+++ +i+ +ql+D+vkar++d++ ++++v++ +++kvr+Q
   EHT99658.1 599 GGDKKVFLSSADWMTRNIDYRIEVAVAILDPQIKQRILDIIAIQLSDTVKARVVDKELSNQYVQRGNRRKVRSQ 672
                  ************************************************************************99 PP

>> PP_kinase  Polyphosphate kinase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.3   9.6e-49   2.9e-45       2     201 ..     119     321 ..     118     322 .. 0.93

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 9.6e-49
                 HHHHHHHHHHHTTGGG---EE-.-TTTS-----TT-EEEEEEEESST-SS-..EEEEEE--.TTS-SEEEE-..T.TSS-.EEEEHHHHHHCCHHHH-T CS
   PP_kinase   2 qkefleeyFeeevfpvLtplav.dpshpfpflsnkslnlavelrkkekeekekefalvkvP.svlpRfielp..peeegkerfilledvIeanldelFp 96 
                 q+++l++yF++e+ +++tp+++ +++    fl++   +lave+ +     ++ ++al+++P +++pRfi+lp  p  ++++ +ill+++++++ld++F+
  EHT99658.1 119 QQSWLRHYFKHELRQHITPILItHETDLTEFLKDDYTYLAVEIIRG----SDIQYALLEIPsDKVPRFINLPaeP-PRRRKPMILLDNILRYCLDDIFK 212
                 99******************998889999**************995....4467*******99*********853.455569999************** PP

                 ...TSEEEEEEEEEEE-SSS----.---.-------------------EEEEETT--HHHHCCHTTTT---TTT.EEEE-.S--GGGGGCS...--TTT CS
   PP_kinase  97 ...gyevleaylfrvtRnadleidedeaedlleeiekeLkkRrrgevvRLeveaempeellkfLlkeleldeedvyeidg.pldltdlmklvgkdrpeL 191
                    +y+ l+ay++++tR+a++++  + +++lle ++++Lk+R ++e+vR++++++mp++++++L+++l +++ d++  +g +++++d++ + + ++++L
  EHT99658.1 213 gfyDYDTLNAYSMKMTRDAEYDLVTEMESSLLELMSSSLKQRLTAEPVRFVYQRDMPDSMVALLCDKLSISNYDSVLAGGrYHNFKDFIGFPNVGKNNL 311
                 9999********************65556**************************************************************99999*** PP

                 SSS----B-- CS
   PP_kinase 192 kyppftpqtp 201
                  ++p++++++
  EHT99658.1 312 INRPMPQIRH 321
                 ****998876 PP

>> PP_kinase_N  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.7   1.8e-35   5.5e-32       1     106 [.       7     109 ..       7     110 .. 0.95
   2 ?   -2.8   0.1       2.7     8e+03      39      62 ..     615     638 ..     612     683 .. 0.46

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 1.8e-35
                  XXXHHHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHCCHHHHH.HTT-..-----------HHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  PP_kinase_N   1 ylnRelSwLkFneRVLeeAedervplleRlkFlaIfssNlDEFfmvRvaslkrqleakvekksedgltpeeqlkaiseeveelveeqekileeellpe 98 
                  y+++e+SwL FneRVL+eA+d+++pl+eR++Fl+I+s+NlDEF++vR+a+lkr++  +  +++ + +tp++ lk+i+++v +  +e+++++ ++ll e
   EHT99658.1   7 YIEKEMSWLCFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFADLKRRILIG--EEQGSASTPRHLLKKIQQRVLKSDQEFDALY-NDLLLE 101
                  89***************************************************88888..4445599************************.9***** PP

                  HHHTTEEE CS
  PP_kinase_N  99 Laeegikl 106
                  +a+++i+l
   EHT99658.1 102 MARNQIFL 109
                  ******98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
                  HHHHHHHHCCHHHHH.HTT-..-- CS
  PP_kinase_N  39 NlDEFfmvRvaslkrqleakvekk 62 
                  N+D  ++v va l  q+++++ + 
   EHT99658.1 615 NIDYRIEVAVAILDPQIKQRILDI 638
                  666666666666666666654222 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.2   3.6e-13   1.1e-09      11     130 ..     366     487 ..     351     489 .. 0.85
   2 !   18.0   0.0   6.5e-07     0.002      12     126 ..     531     636 ..     516     640 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3.6e-13
      PLDc_2  11 sidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgk.......tvivGSsNlt 102
                  i i +y +  ++ i+da++ aa +g+kv +++     +a++ +ea+  + k+l +eagv v ++ +    +HaKl+li ++       ++ +G+ N++
  EHT99658.1 366 AIKINIYRVAKHSRIMDAMIHAAYNGKKVTVVVEL---QARFDEEANIYWAKRL-TEAGVHVIFSAP-GLKIHAKLFLISRRegeeivrYAHIGTGNFN 459
                 5788999999************************9...6677555555555555.******887654.2569*******8666778888********** PP

      PLDc_2 103 krgldlnlElnvviedkelakeleeeFe 130
                 ++  +l ++  + + d+++++e+++ F+
  EHT99658.1 460 EKTARLYTDYSLLTADARITNEVRRVFN 487
                 *************************997 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 6.5e-07
      PLDc_2  12 idiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet.llgslHaKlylid...gktvivGSsNltkrgl 106
                 i + +  + +d+ ++d+l+ a++ gv+v++l++       +   + l  ++e ++       + ++ l+   H+ +y+++   +k v++ S+ + +r+ 
  EHT99658.1 531 ITLKINNL-VDKGLVDRLYTASSVGVNVNLLVRG-----MCSLIPDLPGISENIRVIS----IVDRfLE---HDRVYIFEnggDKKVFLSSADWMTRNI 616
                 55555556.89999*******************9.....3444455555555523222....2223234...*******989999************** PP

      PLDc_2 107 dlnlElnvviedkelakele 126
                 d++ E++v i d+++ +++ 
  EHT99658.1 617 DYRIEVAVAILDPQIKQRIL 636
                 *************9998875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.3e-05      0.25      22      67 ..     391     433 ..     381     436 .. 0.86
   2 ?   -2.8   0.0       3.3   9.8e+03      27      46 ..     640     660 ..     621     669 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-05
                 TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox  22 gkkVtvversdkllrllDeeaskilqeklekngievllntkveeie 67 
                 gkkVtvv+     +  +Deea  +++++l++ g++v++++   +i+
  EHT99658.1 391 GKKVTVVVELQA-R--FDEEANIYWAKRLTEAGVHVIFSAPGLKIH 433
                 79*****99854.4..6********************999888876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
                 EEESSSSSS.TTSSHHHHHHH CS
   Pyr_redox  27 vversdkll.rllDeeaskil 46 
                  ++ sd++  r+ D+e+s+  
  EHT99658.1 640 AIQLSDTVKaRVVDKELSNQY 660
                 566777888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5235.04
//
Query:       EHT99659.1  [L=507]
Description: exopolyphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-96  323.5   0.0    1.7e-96  323.0   0.0    1.2  1  Ppx-GppA  Ppx/GppA phosphatase family
  ------ inclusion threshold ------
      0.034   14.4   0.0      0.079   13.2   0.0    1.6  1  HD        HD domain
      0.061   13.8   0.0        1.6    9.2   0.0    2.6  2  FtsA      Cell division protein FtsA
      0.099   12.7   0.2        2.1    8.4   0.0    2.9  3  EutK_C    Ethanolamine utilization protein EutK C-terminus


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.0   0.0  3.8e-100   1.7e-96       1     284 [.      27     309 ..      27     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: 323.0 bits;  conditional E-value: 3.8e-100
                 EEEEECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHH CS
    Ppx-GppA   1 viarkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarl 99 
                 viar+++g+lq++ r k++v+La+gl++++ l+e+a+er++++L++fae+lq+f+++nv +V+T++lR+avNa+ Fl+r+++++++++e+isg eEarl
  EHT99659.1  27 VIARVVDGALQVLGRLKQRVHLADGLDAKNYLSEDAMERGLNCLALFAERLQGFNASNVTIVGTHTLRQAVNAETFLQRAAEVIPYPIEVISGHEEARL 125
                 79************************************************************************************************* PP

                 HHHHHHHHT---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCHH CS
    Ppx-GppA 100 iylgvvssllekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtisa 198
                 i++gv ++++ekgr+lviDiGGGStElv+ge++e++ ++S+++G+v++++ +++ + ++ e++ +ar a+ ++le+++++++ +g w+ ++g+sgti+a
  EHT99659.1 126 IFMGVEHTQPEKGRKLVIDIGGGSTELVIGEDFEPQLVESRRMGCVSFAQLYFPGGEISVENFRRARLAATQKLETLAWQYRLHG-WQYALGASGTIKA 223
                 *************************************************************************************.************* PP

                 CHHHHHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHHH CS
    Ppx-GppA 199 laeltelhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslllk 284
                 + e+  ++gek++ it e+l +l ++++++k+++ l+l g+ +eR+ v+v+g++il+ v++al+i+++++s+galrEGvly+++ +
  EHT99659.1 224 ACEVLLAMGEKEKLITPERLTKLYDEVIKHKSFAALSLPGLAEERKSVFVPGLAILCGVFDALAIRELTLSDGALREGVLYEMEGR 309
                 **********************************************************************************9865 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.079       6      93 ..     335     418 ..     317     455 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHTTCCHHH CS
          HD   6 leVaklarrlaedlge.......eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld..ledvaklirehheswe 93 
                 ++V++ +++l+ ++         +    ll++aa lH +G   +++             +   ++a+il++  ++ +     +++a+l+r h++   
  EHT99659.1 335 RRVLETTEQLYLQWRDqnpklanPQLAALLKWAAMLHEVGLTINHS-------------GMQRHSAYILQNTNLPGFNQdqQMLLAALVRFHRKAVK 418
                 56777777777777667777777666789**************887.............567899999999988886669999999****9998766 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.072   3.2e+02       1      17 [.      15      31 ..      15     110 .. 0.87
   2 ?    9.2   0.0   0.00036       1.6       2      19 ..     142     159 ..     141     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.072
                EEEEE-SSSEEEEEEET CS
                xxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaed 17
                a++D+G+++  +++a+ 
  EHT99659.1 15 AAIDLGSNSFHMVIARV 31
                789*********99987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00036
                 EEEE-SSSEEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedga 19 
                 ++DiG+g+t+++++ed +
  EHT99659.1 142 VIDIGGGSTELVIGEDFE 159
                 8*************9955 PP

>> EutK_C  Ethanolamine utilization protein EutK C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.2   9.2e+02       8      36 ..      70      98 ..      66     104 .. 0.83
   2 ?   -1.7   0.0       0.7   3.2e+03      39      48 ..     290     299 ..     285     301 .. 0.78
   3 ?    8.4   0.0   0.00047       2.1      19      39 ..     319     339 ..     315     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.2
      EutK_C  8 LaLLasvrqGmtaGevaahfaWPLekarq 36
                LaL+a   qG  a +v    +  L +a +
  EHT99659.1 70 LALFAERLQGFNASNVTIVGTHTLRQAVN 98
                89999999******999877777777766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.7
      EutK_C  39 eqLfsdGaLr 48 
                 e   sdGaLr
  EHT99659.1 290 ELTLSDGALR 299
                 5568*****9 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00047
      EutK_C  19 taGevaahfaWPLekarqvLe 39 
                 ta   a h+a   ++ar+vLe
  EHT99659.1 319 TAQSLANHYAIDSDQARRVLE 339
                 89999***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3957.88
//
Query:       EHT99660.1  [L=199]
Description: putative S-adenosyl-L-methionine-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-81  271.3   0.0    3.8e-81  271.1   0.0    1.0  1  TehB             Tellurite resistance protein TehB
      9e-11   42.3   0.0    1.7e-10   41.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    7.3e-07   29.2   0.0      9e-07   28.9   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    1.7e-06   28.6   0.0    2.8e-06   27.9   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    4.1e-05   24.2   0.0    6.9e-05   23.5   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    4.8e-05   23.2   0.0    7.1e-05   22.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      7e-05   22.4   0.0     0.0001   21.9   0.0    1.3  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.049   13.2   0.0        0.1   12.2   0.0    1.4  2  NodS             Nodulation protein S (NodS)


Domain annotation for each model (and alignments):
>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.1   0.0   1.7e-84   3.8e-81       2     193 .]       2     193 ..       1     193 [. 0.99

  Alignments for each domain:
  == domain 1  score: 271.1 bits;  conditional E-value: 1.7e-84
                 ECCGCCHHHHHHT-----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEE CS
        TehB   2 yikkedyfskkynltathsevveavkivkpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineaklderydfil 100
                  ++ ++yfs+ y lt++hsev ea   + pgk+ldlgcg+grn+l+l+  g+dvtawd+n  s++ l++i+  e l++i+tal d+n+++++  ++ ++
  EHT99660.1   2 TLRTDNYFSETYGLTPVHSEVAEALPKLTPGKALDLGCGSGRNTLFLNQHGFDVTAWDHNPASLERLNQIIAAEGLTGIHTALQDLNQVRFNGAWQVVI 100
                 6799*********************************************************************************************** PP

                 EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEE--EEEEEEE-TTS-EEEEEEEEEE CS
        TehB 101 stvvlmfleaeripsiienmqectkvggynlivaamstddvpctvpfsftfkegelkeyykdwellkynedvgelhktdengnriklkfatll 193
                 stvv+mfl++ +ip++i++mq ct   g+nlivaam+t+d pc+  f+f+fk+gel +yy++w+++kyne+ g+lh+ dengnri  +fatll
  EHT99660.1 101 STVVMMFLQPATIPQLIADMQACTVKNGFNLIVAAMNTEDAPCPSDFPFAFKSGELSHYYRNWHIVKYNENWGQLHRKDENGNRINCRFATLL 193
                 *******************************************************************************************97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   7.7e-14   1.7e-10       2      97 .]      35     128 ..      34     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 7.7e-14
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      LdlGcG+Gr+tl l +++   +vt+ D +++ le+ ++ +++egl  ++   +d++++ f+ g   +v+s+ ++++l+++ ++++++ +  ++ 
       EHT99660.1  35 LDLGCGSGRNTLFLNQHG--FDVTAWDHNPASLERLNQIIAAEGLtGIHTALQDLNQVRFN-GAWQVVISTVVMMFLQPATIPQLIADMQACTV 125
                      9****************5..*************************9*************98.59******766999************999887 PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      ++G
       EHT99660.1 126 KNG 128
                      776 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     4e-10     9e-07      12      90 ..      21     136 ..      11     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4e-10
  Methyltransf_23  12 klerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae..........................................ka 63 
                      +++++lp + ++g+ Ld+GcG+G+++  l ++gf+vt+ D +p+  e++                                           ++
       EHT99660.1  21 EVAEALP-KLTPGKALDLGCGSGRNTLFLNQHGFDVTAWDHNPASLERLNqiiaaegltgihtalqdlnqvrfngawqvvistvvmmflqpaTI 113
                      5666776.78999******************************999988888888877777654444444444443333333333333222211 PP

  Methyltransf_23  64 kkaqkdqfdeqeaaepqg...........kfdlIvlre 90 
                      ++                            f+lIv+ +
       EHT99660.1 114 PQ---------------LiadmqactvknGFNLIVAAM 136
                      11...............022222222222555555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.3e-09   2.8e-06       1      92 [.      35     128 ..      35     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpg 91 
                      Ld+GcG+Gr++  l ++g +v++ D +++ l++ ++ +  egl  +    +d+ ++ f+     +v+s+ v++++  +   ++++ +  +  ++
       EHT99660.1  35 LDLGCGSGRNTLFLNQHGFDVTAWDHNPASLERLNQIIAAEGLtGIHTALQDLNQVRFNG-AWQVVISTVVMMFLqpATIPQLIADMQACTVKN 127
                      8*****************************************886667888888888876.999******999997767777777777666666 PP

                      E CS
  Methyltransf_11  92 G 92 
                      G
       EHT99660.1 128 G 128
                      6 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   3.1e-08   6.9e-05       1      97 [.      35     128 ..      35     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.1e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhl..kdirevldnirk 91 
                      L++GcG+G+++  l ++  + ++t+ D +p+++  + +++ + e++   +  l++l+        +++ +v++  v+  l  ++i ++++ + +
       EHT99660.1  35 LDLGCGSGRNTLFLNQH--GFDVTAWDHNPASL-ERLNQIIAAEGLTGIHTALQDLNQV--R-FnGAWQVVISTVVMMFLqpATIPQLIADMQA 122
                      8**************99..**************.4444444444444444444444422..2.247*************9999999****9999 PP

  Methyltransf_12  92 lLkpgG 97 
                      + +++G
       EHT99660.1 123 CTVKNG 128
                      999998 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.1e-08   7.1e-05       6      81 ..      33     102 ..      30     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.1e-08
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsn 81 
                      + lDlGCG+G+ t+ l++    + +v+  D ++ ++e+ +++ +  gl+ ++   +d ++    ++     +++s 
       EHT99660.1  33 KALDLGCGSGRNTLFLNQH---GFDVTAWDHNPASLERLNQIIAAEGLTGIHTALQDLNQVR--FN-GAWQVVIST 102
                      579**************54...3469************************999999988866..55.556666665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.5e-08    0.0001      24     103 ..      23     101 ..      19     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.5e-08
                 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE CS
         MTS  24 letlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivs 103
                 +e+lpk + gk+lDlGcG G  ++ l ++  +  vt+ d + ++le  ++ ++a++l  +++  +d+ +   ++  ++++s
  EHT99660.1  23 AEALPKLTPGKALDLGCGSGRNTLFLNQHGFD--VTAWDHNPASLERLNQIIAAEGLTgIHTALQDLNQVRFNGAWQVVIS 101
                 5789999999****************998777..9***********************99999999998888888888886 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.7e-05       0.1      44     120 ..      31     109 ..      19     123 .. 0.89
   2 ?   -2.1   0.0       1.1   2.4e+03      91     113 ..     113     135 ..     109     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
        NodS  44 iadalevGcaaGalterlapyckrltvvdvveeaiararervk..esshiswivsdvqqfstdekfdlivvaevlyyie 120
                  ++al++Gc +G  t  l  +   +t  d  + +++r ++ +     + i    +d++q+  +  + +++ + v+ +++
  EHT99660.1  31 PGKALDLGCGSGRNTLFLNQHGFDVTAWDHNPASLERLNQIIAaeGLTGIHTALQDLNQVRFNGAWQVVISTVVMMFLQ 109
                 5789**********************************998861156899999*********************99987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
        NodS  91 iswivsdvqqfstdekfdlivva 113
                 i  +++d+q    ++ f+liv a
  EHT99660.1 113 IPQLIADMQACTVKNGFNLIVAA 135
                 5567899999999999***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1483.11
//
Query:       EHT99661.1  [L=61]
Description: hypothetical protein CKS_1698 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-13   49.2   0.3    4.1e-13   49.0   0.3    1.1  1  DUF2633      Protein of unknown function (DUF2633)
  ------ inclusion threshold ------
      0.033   14.5   0.1      0.038   14.3   0.1    1.0  1  Sigma_reg_N  Sigma factor regulator N-terminal
      0.092   12.1   0.1      0.094   12.1   0.1    1.0  1  OSTMP1       Osteopetrosis-associated transmembrane protein 1
      0.092   12.5   0.5      0.096   12.4   0.5    1.0  1  DUF3328      Domain of unknown function (DUF3328)


Domain annotation for each model (and alignments):
>> DUF2633  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.3   9.1e-17   4.1e-13       1      40 [.       8      47 ..       8      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 9.1e-17
     DUF2633  1 kRrRfntrlTrivLliSFLflFGRllYsaigawsHHqdkk 40
                +Rr+ +  +Tr+vLliSF++lF Rl++   +a+ HHq+k+
  EHT99661.1  8 RRRKKSVSMTRVVLLISFIILFSRLVFILPAAFEHHQQKQ 47
                6899999*******************************75 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   8.6e-06     0.038       5      47 ..       8      50 ..       4      54 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-06
  Sigma_reg_N  5 kkakrksilrivlislivlllifvilvvtllylaekegnklre 47
                 +++k+   ++ v++ +++++l++ + +++ +++++++++++++
   EHT99661.1  8 RRRKKSVSMTRVVLLISFIILFSRLVFILPAAFEHHQQKQTES 50
                 4444444555555555555555555599999999999988776 PP

>> OSTMP1  Osteopetrosis-associated transmembrane protein 1 precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.1e-05     0.094     186     220 ..      15      49 ..       8      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
      OSTMP1 186 eetvpviavssfvlllpviFYlssflhseqkkrkl 220
                 + t  v+++s+++l++ ++F l + ++ +q+k++ 
  EHT99661.1  15 SMTRVVLLISFIILFSRLVFILPAAFEHHQQKQTE 49 
                 567789999999**********9999988888775 PP

>> DUF3328  Domain of unknown function (DUF3328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   2.1e-05     0.096       2      53 ..       8      58 ..       5      61 .] 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
     DUF3328  2 rprkrssawrrllllvlllllllllllilssllsssekkaakkkspsspspa 53
                r+rk+s ++ r +ll+ +++l++ l++il  ++ ++++k+ + ++p +p+ +
  EHT99661.1  8 RRRKKSVSMTRVVLLISFIILFSRLVFILPAAFEHHQQKQTE-SAPAIPTLS 58
                334444444455888888888889999999999999888888.777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 479.07
//
Query:       EHT99662.1  [L=263]
Description: divalent cation transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-21   76.2   0.4    6.3e-21   74.9   0.4    1.7  1  MgtE_N    MgtE intracellular N domain
    2.6e-09   37.4   1.1    0.00035   21.0   0.0    3.4  4  CBS       CBS domain


Domain annotation for each model (and alignments):
>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.4     7e-25   6.3e-21       1     102 []      59     160 ..      59     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 7e-25
                 S-HHHHHHCHCCS-HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHHHHHHCS-HHHHHHHHHHCTS CS
      MgtE_N   1 lhpadiaelleelpeeeraallrllpkeeaaevleeldedlqeeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeereeieellsY 99 
                 lh+ad+a++le+lpee r+al++l+p+e+++ vl e +e + ++l +++sd+++ ++++ ld Dd+a l++ lp   + +ll++l+++ r++i  ++++
  EHT99662.1  59 LHAADLADILEALPEEARLALWSLVPPEKRGHVLVEASETVWDSLTDEMSDRDILQAIAPLDIDDQAWLVRYLPRGLTGRLLTSLEPKLRARILSVMKF 157
                 79************************************************************************************************9 PP

                 -TT CS
      MgtE_N 100 ped 102
                 + d
  EHT99662.1 158 DRD 160
                 976 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.3   1.2e+04      48      56 ..      64      72 ..      63      73 .. 0.75
   2 ?   -0.1   0.0      0.14   1.3e+03      47      56 ..     108     117 ..     107     118 .. 0.88
   3 !   21.0   0.0   3.8e-08   0.00035       1      52 [.     162     218 ..     162     222 .. 0.90
   4 !   12.8   0.0   1.4e-05      0.12       1      37 [.     226     262 ..     226     263 .] 0.93

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.3
                HHHHHHHHH CS
         CBS 48 lrDllrall 56
                l D+l+al+
  EHT99662.1 64 LADILEALP 72
                569999886 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.14
                 EHHHHHHHHH CS
         CBS  47 tlrDllrall 56 
                 ++rD+l+a++
  EHT99662.1 108 SDRDILQAIA 117
                 79*****996 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 3.8e-08
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHT......SSEEEEEETTTBEEEEEEHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekg......vsrlPVVdedgklvGivtlrDll 52 
                 Vg +m  +++tv++d tl+ + + + +kg       + +++++e+++l+G + l+D+l
  EHT99662.1 162 VGRVMDFNILTVREDVTLATVQRFL-RKGksmpdgTDKIFITNEQNQLLGELLLTDIL 218
                 7899999******************.55556677789********************9 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 1.4e-05
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHT.SSEEEEEE CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekg.vsrlPVVd 37 
                 V+++m++ + t+  d+  e+a+  +++++ +s+  V+d
  EHT99662.1 226 VSEVMNPHPTTFQLDDKAEDAASAFERYNlISAA-VTD 262
                 89***********************999999888.875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2306.65
//
Query:       EHT99663.1  [L=202]
Description: magnesium transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-27   95.9  10.3    2.2e-27   95.9  10.3    1.7  2  MgtE      Divalent cation transporter
  ------ inclusion threshold ------
       0.01   15.6   1.0      0.014   15.2   1.0    1.1  1  ABA_GPCR  Abscisic acid G-protein coupled receptor


Domain annotation for each model (and alignments):
>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.24   2.2e+03      40      53 ..      44      57 ..      26      70 .. 0.46
   2 !   95.9  10.3   2.4e-31   2.2e-27       1     123 [.      71     192 ..      71     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHH CS
        MgtE 40 lrvvlllgvilgll 53
                l ++++ + ++gl+
  EHT99663.1 44 LCTAFIASRVIGLF 57
                22222222222222 PP

  == domain 2  score: 95.9 bits;  conditional E-value: 2.4e-31
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSS-GG.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.CTSHHHHHHHHHHHHHHHHHH..HHHHHHHHHHT CS
        MgtE   1 iPvilglgGnlgaqlasristalhlgelekk.lkkvllkelrvvlllgvilgllifllalllgwslllalvvglalvlvllaaallilgvllplllwkl 98 
                 +P+i+g+gGn+g+q+ ++i++al+l+++e+  +  ++ +e+ v+l++g+++g +++++++l+++++ l+ v++la+vl+ll+aa++  gv++pl++ k+
  EHT99663.1  71 MPIIAGIGGNTGNQTITMIVRALALHQVEPGnFSFLFKREIGVALINGLFWGGIMGAITWLMYSNMALGGVMMLAMVLNLLLAAIM--GVMVPLVMTKM 167
                 8***************************9999999***************************************************..*********** PP

                 TS-GGGSHHHHHHHHHHHHHHHHHH CS
        MgtE  99 glDPdnaaiPlltalgDllgtlllv 123
                 + DP++ ++ l+ta++D  g+++++
  EHT99663.1 168 KRDPAVGSSVLITAITDTGGFFIFL 192
                 **********************996 PP

>> ABA_GPCR  Abscisic acid G-protein coupled receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.0   1.5e-06     0.014      39     123 ..      62     160 ..      28     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-06
    ABA_GPCR  39 l................sssssDplavtlaklllrhfdlkldlealsrqiSllLsgvlllaslssvlttissllrllpsslqllkssllnLllselmgi 121
                 +                +++++  ++ +++ l+l+++++ +      r i+++L+  l+++ +   +t + +  ++l + +    + +lnLll+ +mg+
  EHT99663.1  62 SqivalatlmpiiagigGNTGNQTITMIVRALALHQVEPGNFSFLFKREIGVALINGLFWGGIMGAITWLMYSNMALGGVMM--LAMVLNLLLAAIMGV 158
                 34455666666677888889999999999999988888888777788*******************************9995..7*************9 PP

    ABA_GPCR 122 Yv 123
                  v
  EHT99663.1 159 MV 160
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1655.48
//
Query:       EHT99664.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99664.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99664.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99664.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99664.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99664.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99664.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT99664.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99664.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99664.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99664.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99664.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT99664.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99664.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99664.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT99664.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99664.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99664.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2581.81
//
Query:       EHT99665.1  [L=64]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 506.70
//
Query:       EHT99666.1  [L=137]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-34  116.6   0.1    5.6e-34  116.4   0.1    1.0  1  DUF4054   Protein of unknown function (DUF4054)
  ------ inclusion threshold ------
      0.018   15.0   0.1       0.22   11.4   0.1    2.1  2  PROCT     PROCT (NUC072) domain


Domain annotation for each model (and alignments):
>> DUF4054  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.1   6.3e-38   5.6e-34       1     106 [.      15     127 ..      15     128 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 6.3e-38
     DUF4054   1 fralfpef...aavpdaaiqawldlAallvsakrfgk.lreqalallaAHll...aadgraaaaggaggaaagrvtsasvGkvsvsydesaaanasagw 92 
                 fr++fp+f   +++pda+iq+ l+lA+ l+s+k +gk l +++++l++AH++   aad+ra+a+gg+gga+ g ++s+sv+kvsvsyd++a+ n++ag+
  EHT99666.1  15 FRTAFPQFsdtTRYPDAQIQFRLNLADVLLSEKITGKdLFPYFVELFVAHYMalwAADNRAMATGGSGGASGGVASSKSVDKVSVSYDTGATLNPDAGF 113
                 9************************************9************************************************************* PP

     DUF4054  93 lnqTpYGqeflall 106
                 +n T+YG+ef++l+
  EHT99666.1 114 WNYTRYGAEFWQLI 127
                 ************97 PP

>> PROCT  PROCT (NUC072) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.027   2.4e+02      49      64 ..      40      55 ..      21      58 .. 0.82
   2 ?   11.4   0.1   2.5e-05      0.22      58      79 ..     103     124 ..      67     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.027
       PROCT 49 vqllLsdrilGfflvP 64
                + +lLs++i+G  l P
  EHT99666.1 40 ADVLLSEKITGKDLFP 55
                679********98877 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2.5e-05
       PROCT  58 lGfflvPeegvWnysfmgakfs 79 
                 +G +l P+ g Wny+  ga+f 
  EHT99666.1 103 TGATLNPDAGFWNYTRYGAEFW 124
                 699***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1231.99
//
Query:       EHT99667.1  [L=121]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00013   21.4   1.1    0.00016   21.1   1.1    1.1  1  DUF3450      Protein of unknown function (DUF3450)
     0.0011   19.1   0.1     0.0014   18.9   0.1    1.1  1  Fib_alpha    Fibrinogen alpha/beta chain family
     0.0017   18.0   0.2      0.002   17.8   0.2    1.0  1  Filament     Intermediate filament protein
     0.0035   17.7   0.1     0.0045   17.3   0.1    1.1  1  DUF641       Plant protein of unknown function (DUF641)
  ------ inclusion threshold ------
      0.018   14.4   0.6       0.02   14.3   0.6    1.1  1  DUF4407      Domain of unknown function (DUF4407)
       0.02   14.7   1.3      0.029   14.2   1.3    1.2  1  Phage_GP20   Phage minor structural protein GP20
      0.021   13.7   0.4      0.025   13.5   0.4    1.1  1  Spc7         Spc7 kinetochore protein
      0.022   14.9   1.0       0.03   14.4   1.0    1.3  1  UPF0242      Uncharacterised protein family (UPF0242) N-termi
      0.025   13.8   0.2      0.032   13.4   0.2    1.1  1  Tho2         Transcription factor/nuclear export subunit prot
       0.04   14.5   0.4      0.054   14.1   0.4    1.2  1  BST2         Bone marrow stromal antigen 2
      0.057   13.3   1.2         28    4.7   0.2    3.2  3  DUF1949      Domain of unknown function (DUF1949)
       0.06   12.0   0.5      0.066   11.9   0.5    1.0  1  AAA_13       AAA domain
      0.069   13.4   0.1       0.13   12.5   0.1    1.4  1  DASH_Dad1    DASH complex subunit Dad1
       0.12   12.2   0.1       0.16   11.8   0.1    1.1  1  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
        1.3    9.0   5.2       0.35   10.9   1.7    1.8  2  DUF2680      Protein of unknown function (DUF2680)
        2.8    7.8   6.9          3    7.7   3.5    2.0  1  DivIC        Septum formation initiator


Domain annotation for each model (and alignments):
>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.1   1.4e-07   0.00016      40      91 ..      53     104 ..      32     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
     DUF3450  40 dklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieei 91 
                 +++ d+++e++a++++lk+ +e+ ++  + l+++v++q+++ + l++qi+e+
  EHT99667.1  53 TAVPDNSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAEL 104
                 4567999******************************************986 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.2e-06    0.0014      69     128 ..      45     104 ..      23     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  69 qkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128
                 q++++ nd+++ + s+e + +i++lk+ i +    ir L++ +++++ + + L+q+i+++
  EHT99667.1  45 QAHAEINDTAVPDNSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAEL 104
                 4455558**************************************************987 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.8e-06     0.002     189     250 ..      39     105 ..      25     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
                 XXXXXXXXXXXXXXXX.XXXXX....XXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 189 aeewykskleelqeaa.eknse....alrsakeeitelrrqiqsleieleslkkqkasleaqlaele 250
                 ae+w+ +  +e++++a   ns+    ++++ k  i+e    i  l+++++++k+q ++l++q+ael 
  EHT99667.1  39 AEHWFTQAHAEINDTAvPDNSDeyqaQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAELL 105
                 899**9999999876523444411115666777788889999**********************985 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     4e-06    0.0045      70     118 ..      56     104 ..      32     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4e-06
      DUF641  70 eaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeea 118
                 + ++ e +a+i++++ l++  ++ +++l +++++++++ e L+++++e+
  EHT99667.1  56 PDNSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAEL 104
                 36778999************************************99986 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.6   1.8e-05      0.02     119     176 ..      58     114 ..      34     121 .] 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
     DUF4407 119 eakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgtt 176
                 + +e+++q++ +l+a ++e +a i++l +++d+++a+ +al+++ ++ l g  g+g +
  EHT99667.1  58 NSDEYQAQIE-TLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAELLAGGDGDGKK 114
                 3344444444.47788888888888999999999999999999999999997766654 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.3   2.6e-05     0.029      10      67 ..      50     103 ..      43     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
  Phage_GP20  10 engkditkakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkk 67 
                  n++ ++ ++ de++++ +tlk  +++rd  + dL  +   ++e ++q e l++++++
  EHT99667.1  50 INDTAVPDNS-DEYQAQIETLKALIEERDAIIRDLTSQ---VDEQKAQTEALNQQIAE 103
                 5666777666.99**********************776...77777777777776654 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   2.2e-05     0.025     192     246 ..      49     104 ..      30     107 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
        Spc7 192 elesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                 e+++   +++  e++ ++++lka iee+ + + +l++q++e++++ e+l++q++el
  EHT99667.1  49 EINDTAvPDNSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAEL 104
                 44444445666677777777777777777777777777777777777777777776 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.0   2.7e-05      0.03     152     180 ..      60      88 ..      44     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
     UPF0242 152 qeyqetieeqrsvlekrqdqieqLeskVr 180
                 +eyq++ie +++ +e+r++ i +L s+V 
  EHT99667.1  60 DEYQAQIETLKALIEERDAIIRDLTSQVD 88 
                 79999999999999999999999999996 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   2.9e-05     0.032      16      70 ..      49     105 ..      42     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
        Tho2  16 slyDiyvp..keqYekeieklkseieelakdrsderaaakkkkkekkrlkeliekLe 70 
                 +++D +vp  +++Y+++ie lk+ iee + + +d +++ +++k++ + l+++i++L 
  EHT99667.1  49 EINDTAVPdnSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAELL 105
                 6788899955678***************9999999****************999985 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   4.8e-05     0.054      26      86 ..      43     105 ..      31     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  26 Ltqaqeslreaeaqaat..cnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdae 86 
                  tqa+ +++++    ++  ++  ++tLka +e+  a  ++  ++v e++ + + Lnq++ + +
  EHT99667.1  43 FTQAHAEINDTAVPDNSdeYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAELL 105
                 6777777777664433322778899*********************************98875 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   2.5e+02      12      25 ..      40      53 ..      37      57 .. 0.90
   2 ?    3.9   0.1     0.043        49       6      24 ..      64      82 ..      63      84 .. 0.92
   3 ?    4.7   0.2     0.025        28      39      55 ..      91     107 ..      86     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.22
     DUF1949 12 erlLeqfgativdt 25
                e+++ q++a+i dt
  EHT99667.1 40 EHWFTQAHAEINDT 53
                89*********998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.043
     DUF1949  6 adlgkverlLeqfgativd 24
                a+++++++l+e+++a i d
  EHT99667.1 64 AQIETLKALIEERDAIIRD 82
                78999**********9987 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.025
     DUF1949  39 eeeveafkaaLtdltsG 55 
                 +++ ea+++++++l +G
  EHT99667.1  91 KAQTEALNQQIAELLAG 107
                 6899**********998 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   5.9e-05     0.066     397     449 ..      52     104 ..      23     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
      AAA_13 397 kklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeL 449
                 +    +   e++++++++k  +++ ++ i +l+ +++e++a++++l+++i+eL
  EHT99667.1  52 DTAVPDNSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQTEALNQQIAEL 104
                 33344445789999999999999999999999999999999999999999998 PP

>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011      0.13       4      36 ..      74     106 ..      72     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
   DASH_Dad1   4 rqRdrliqeIaesmeevlnnlnaLNRsLEevia 36 
                 ++Rd++i++++++++e   +++aLN+++ e++a
  EHT99667.1  74 EERDAIIRDLTSQVDEQKAQTEALNQQIAELLA 106
                 89************************9988765 PP

>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.16      58     124 ..      40     105 ..      29     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
  BCDHK_Adom3  58 kdwYaqsfeellelpkp.eleenekftelLekikkrHddvvttlaqGvlelkekrkrkqidseiqsFL 124
                  ++w++q+  e+ + + p + +e ++  e+L+ + +++d+ +  l+  v e k++  +++ +++i + L
   EHT99667.1  40 EHWFTQAHAEINDTAVPdNSDEYQAQIETLKALIEERDAIIRDLTSQVDEQKAQ--TEALNQQIAELL 105
                  689*********999995677789**************************9987..678888887766 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.9   4.3e+03       8      13 ..      65      70 ..      60      76 .. 0.44
   2 ?   10.9   1.7   0.00032      0.35       3      19 ..      88     104 ..      87     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.9
     DUF2680  8 eleaLy 13
                ++e+L+
  EHT99667.1 65 QIETLK 70
                233322 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00032
     DUF2680   3 deQkkeleaLyqqiael 19 
                 deQk++ eaL+qqiael
  EHT99667.1  88 DEQKAQTEALNQQIAEL 104
                 89*************97 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.5    0.0027         3      25      50 ..      79     104 ..      73     107 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  25 eiaalqaelaklkaeneeLeaevkdL 50 
                  i +l+ +++++ka+ e+L++++++L
  EHT99667.1  79 IIRDLTSQVDEQKAQTEALNQQIAEL 104
                 56677777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1593  (0.0888505); expected 358.6 (0.02)
Passed bias filter:                     1090  (0.0607954); expected 358.6 (0.02)
Passed Vit filter:                       177  (0.00987227); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 1084.97
//
Query:       EHT99668.1  [L=81]
Description: hypothetical protein CKS_1690 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 706.59
//
Query:       EHT99669.1  [L=313]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-83  277.7   0.0    9.9e-83  277.4   0.0    1.0  1  DUF2184   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2184  Uncharacterized protein conserved in bacteria (DUF2184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.4   0.0   5.5e-87   9.9e-83       4     251 .]      73     313 .]      71     313 .] 0.99

  Alignments for each domain:
  == domain 1  score: 277.4 bits;  conditional E-value: 5.5e-87
     DUF2184   4 kiisnyaddlprvdvdieketakvkligasygytvqElraaqalGrsLdtrkadaarraadkkinkiayvGdekkgltGLlnspgvtvttaaagatgst 102
                 ++i+++++++++v+v+i+k+ ++++l+g+++g+tv El+aaq++Gr++d++k d+++++++++ ++++y+Gd+ +g +GLln + v+v +      + +
  EHT99669.1  73 NWIGKDSTAIAGVNVNIDKDGNPLSLWGMELGWTVIELQAAQQVGRPIDAQKYDGMQLKWNMDADEQVYIGDTSLGAKGLLNLDRVPVSN------AVK 165
                 8*****************************************************************************************......568 PP

     DUF2184 103 kWadkTadeiladinaaltavwtasgyveapdtlllppsqyadLatrrvsdtgnktilsflkenniatkqkgrpLtiekvkelegagtggkdrmvaYtn 201
                  Wa++T+dei + in++lt +w+as y+++p+ lllpp+q+a+L++ +vs++gn+++l++lk+n+i  +q+g+pL+i++vk+l+g+g++gkdrmvaYtn
  EHT99669.1 166 PWAQSTPDEIRDSINTLLTNAWKASAYSVVPTDLLLPPEQFAYLSSVIVSSAGNQSLLTYLKTNTISYHQNGVPLDIRAVKWLKGRGVSGKDRMVAYTN 264
                 9************************************************************************************************** PP

     DUF2184 202 dpdvvelelpmpltrlpaqkrnlefevpyearlggveirypkaivyvDgI 251
                 d+++v+++l +pl+  p+q+r + ++v+y+++lg ve +y +++ y DgI
  EHT99669.1 265 DKKYVRFPL-VPLQSIPVQYRGIYQIVTYYGKLGAVETVYRETLSYCDGI 313
                 *********.***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2542.88
//
Query:       EHT99670.1  [L=59]
Description: hypothetical protein CKS_1688 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 458.36
//
Query:       EHT99671.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99671.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99671.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99671.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99671.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 898.61
//
Query:       EHT99672.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-39  133.8   0.0      2e-39  133.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.1e-43     2e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.1e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99672.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDLIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1048.22
//
Query:       EHT99673.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHT99673.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99673.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99673.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99673.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99673.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99673.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHT99673.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99673.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99673.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99673.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99673.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHT99673.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99673.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHT99673.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99673.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT99673.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT99673.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHT99673.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99673.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT99673.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99673.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHT99673.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99673.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99673.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99673.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99673.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99673.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99673.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99673.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHT99673.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHT99673.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHT99673.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHT99673.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT99673.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99673.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99673.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.39
# Mc/sec: 4034.64
//
Query:       EHT99674.1  [L=84]
Description: hypothetical protein CKS_1684 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-08   32.7   0.0    8.3e-08   32.5   0.0    1.1  1  FaeA      FaeA-like protein
     0.0072   16.1   0.0     0.0092   15.7   0.0    1.2  1  HTH_DeoR  DeoR-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.082   12.7   0.0       0.12   12.2   0.0    1.2  1  HTH_23    Homeodomain-like domain
       0.17   12.2   0.0       0.22   11.9   0.0    1.1  1  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.9e-11   8.3e-08       1      48 [.      26      73 ..      26      84 .] 0.92

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.9e-11
                -HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  1 mkeeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                mk+ I+  +++   +  Tr++Ad   +s+Y aR +L +Le  g +kr 
  EHT99674.1 26 MKDVIMCLIKKQSEGILTRDVADECDMSIYAARNWLLKLENSGLLKRE 73
                9999*****99999********************************96 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.1e-06    0.0092      10      49 ..      36      75 ..      27      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-06
    HTH_DeoR 10 kqqgklsveelvellgvSeaTiRRDLneLeeqglltRthG 49
                kq+  + + +++++++ S   +R+ L +Le++gll+R  G
  EHT99674.1 36 KQSEGILTRDVADECDMSIYAARNWLLKLENSGLLKREAG 75
                45667999*****************************876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.12      16      46 ..      39      69 ..      29      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkryreeGl 46
                eG+ +r++A+e+++s    ++wl + +++Gl
  EHT99674.1 39 EGILTRDVADECDMSIYAARNWLLKLENSGL 69
                3999******************988876885 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.22      13      62 ..      29      77 ..      18      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
                HHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 13 allyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                +++ L k+++e+ + ++++a++ ++s   ++  l kL+++gl+k + G +
  EHT99674.1 29 VIMCLIKKQSEG-ILTRDVADECDMSIYAARNWLLKLENSGLLKREAGTK 77
                455566666666.999****************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 747.73
//
Query:       EHT99675.1  [L=253]
Description: ATP-binding component of an ABC superfamily iron(III) dicitrate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-35  121.1   0.0    5.9e-35  120.8   0.0    1.1  1  ABC_tran      ABC transporter
      9e-09   35.5   1.3    6.5e-06   26.2   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      3e-05   23.6   0.1      0.002   17.6   0.1    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00031   21.2   0.3    0.00073   20.0   0.3    1.7  1  AAA_16        AAA ATPase domain
     0.0035   17.1   0.4      0.065   12.9   0.0    2.0  2  AAA_15        AAA ATPase domain
     0.0082   15.4   0.0     0.0098   15.2   0.0    1.1  1  KAP_NTPase    KAP family P-loop domain
     0.0084   15.8   0.1      0.018   14.8   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0093   15.4   0.0      0.016   14.6   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.014   15.3   0.2      0.024   14.5   0.2    1.3  1  RsgA_GTPase   RsgA GTPase
      0.037   13.8   0.0      0.053   13.2   0.0    1.3  1  AAA_30        AAA domain
      0.051   13.9   0.4       0.27   11.6   0.1    2.3  2  DUF2867       Protein of unknown function (DUF2867)
      0.065   13.7   0.0       0.11   13.0   0.0    1.3  1  AAA_23        AAA domain
      0.066   13.2   0.0       0.23   11.4   0.0    1.9  2  AAA_5         AAA domain (dynein-related subfamily)
      0.076   12.6   0.1       0.11   12.1   0.1    1.2  1  SRP54         SRP54-type protein, GTPase domain
      0.084   13.4   0.0       0.15   12.6   0.0    1.5  1  AAA_18        AAA domain
       0.14   12.1   0.1       0.22   11.4   0.1    1.3  1  APS_kinase    Adenylylsulphate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   5.3e-38   5.9e-35       2     137 .]      19     167 ..      18     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 5.3e-38
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esde 83 
                 ++vsl +++ge+v+++G+nG+GKS+Ll+llagl k+++G++lldgkdl+++ +++l +++++++q++    +++vr+                  ++d+
  EHT99675.1  19 NDVSLAVSPGETVGLLGPNGSGKSSLLRLLAGLRKQQKGKVLLDGKDLSSIARKQLARRVAFVEQHALTSANMRVRDIvklgriphhspfsswthQDDD 117
                 89***********************************************************************9***9*************98877777 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +++al+++++    d+ +    +sLSgG++qrv +aral++ p+ +llDEpt+
  EHT99675.1 118 IVDAALKRVDMASRCDQGW----QSLSGGERQRVHIARALAQSPNEILLDEPTN 167
                 7999999999988666666....******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   5.8e-09   6.5e-06       3     116 ..      32     130 ..      31     146 .. 0.71
   2 !    8.6   0.5    0.0013       1.5     251     284 ..     153     183 ..     136     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 5.8e-09
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgllld 101
                 +l GpNgsGKS+LL++l +l+         +  +++    +k+ s++ +++   +++f    + +++ + r +  ++  ++       +++ +s++ +d
  EHT99675.1  32 GLLGPNGSGKSSLLRLLAGLR---------KQQKGKVLLDGKDLSSIARKQLARRVAFVEQ-HALTSANMRVRDIVKLGRI-----PHHSPFSSWTHQD 115
                 699*****************5.........4555555566778888888888777777777.7777766666666666666.....6677777777777 PP

      AAA_21 102 krsleeedvfnpear 116
                 +++ +   +  ++a+
  EHT99675.1 116 DDIVDAALKRVDMAS 130
                 776666655555555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
      AAA_21 251 llralkkgsllliDEpEngLHPkllrrllellke 284
                 l++ + +   +l+DEp n+L+ + +  l++l++e
  EHT99675.1 153 LAQSPNE---ILLDEPTNHLDIHHQIQLMKLISE 183
                 5555554...9***********999999999976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.8e-06     0.002      27     187 ..      31     185 ..      11     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTT.TCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakkl.rseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevs 124
                   ++GpNGSGKs+ll  +  +  +++ k l   ++ls++     ++ +   a ve +   + +     ++ v++ r   ++  s+++ ++ ++  + ++
  EHT99675.1  31 VGLLGPNGSGKSSLLRLLAGLRKQQKGKVLlDGKDLSSIAR---KQLARRVAFVEQHALTSANM--RVRDIVKLGRIPHHSPFSSWTHQDDDIVDAALK 124
                 3589**********998843333333333302333333333...35555566666654444443..556678888888888888888888888877776 PP

                 H..HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 e..llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 +  + ++ +   ++LSgGe++ v +a  +A    +     llDe   +LD ++  ++ +l+ e  
  EHT99675.1 125 RvdMASRCDQGWQSLSGGERQRVHIARALAQSPNE----ILLDEPTNHLDIHHQIQLMKLISELP 185
                 51145555566689******999999887754433....58999999999999999999998865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   6.5e-07   0.00073      24      84 ..      27      82 ..      18     209 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.5e-07
      AAA_16 24 p.elvllsGesGvGKsslvrellralekd.ggif.lrgkcdqlesaipysalaqalareellrq 84
                p e v l G+ G+GKssl+r l+  l+k+ +g + l gk  ++       +  ++lar+  + +
  EHT99675.1 27 PgETVGLLGPNGSGKSSLLRLLAG-LRKQqKGKVlLDGKDLSS-------IARKQLARRVAFVE 82
                3378999****************5.555525777355554444.......22222222222222 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   5.8e-05     0.065      27      68 ..      32      69 ..      18      84 .. 0.76
   2 ?    2.0   0.5      0.13   1.4e+02     323     351 ..     156     184 ..     143     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
      AAA_15 27 vliGkNnsGKSsilealdlFlnnkekknkkvikiekedleif 68
                 l G+N+sGKSs+l++l  + +++    k ++ ++ +dl+  
  EHT99675.1 32 GLLGPNGSGKSSLLRLLAGLRKQQ----KGKVLLDGKDLSSI 69
                488**************8887766....66677777766655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkel 351
                 +++ +l++EP +hL + +q +l+kl+ el
  EHT99675.1 156 SPNEILLDEPTNHLDIHHQIQLMKLISEL 184
                 5666899******************9987 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.7e-06    0.0098      17      49 ..      23      99 ..      14     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.7e-06
  KAP_NTPase 17 l..atpivvgLygkWGsGKssllnkledelkefa..........................................k 49
                l  +++ +vgL g+ GsGKssll +l    k+++                                           
  EHT99675.1 23 LavSPGETVGLLGPNGSGKSSLLRLLAGLRKQQKgkvlldgkdlssiarkqlarrvafveqhaltsanmrvrdivkL 99
                3558999********************99999988888998888888888855555555555555555555555552 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.6e-05     0.018      16      39 ..      22      45 ..      16      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                ++ +++ +++ l Gp+GsGKS+ll
  EHT99675.1 22 SLAVSPGETVGLLGPNGSGKSSLL 45
                667777778889**********98 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.016      12      86 ..      18      88 ..       9      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
  Mg_chelatase 12 kraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsas 86
                   + + +a++ g  + l+Gp GsGK+ l + l++l  + + +  l+ + ++s+a+    ++l +r  f++ h  +s
    EHT99675.1 18 VNDVSLAVSPGETVGLLGPNGSGKSSLLRLLAGLRKQQKGKVLLDGKDLSSIAR----KQLARRVAFVEQHALTS 88
                  566788999999999*************************************99....55666667777776555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   2.2e-05     0.024      88     130 ..      16      59 ..       2      65 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                    +++++ +++  +t+ l+G+ G GKS+L+  l++  +++ g+v
   EHT99675.1  16 IIVNDVSLAVSPgETVGLLGPNGSGKSSLLRLLAGLRKQQKGKV 59 
                  55566665565558999*****************9888877766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.8e-05     0.053      14      51 ..      24      61 ..      21     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.8e-05
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaaggrvig 51
                + s+  ++ l Gp G+GK+ +l+ l+ + ++++g+v++
  EHT99675.1 24 AVSPGETVGLLGPNGSGKSSLLRLLAGLRKQQKGKVLL 61
                55667789999*********************888874 PP

>> DUF2867  Protein of unknown function (DUF2867)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00024      0.27      75     124 ..     131     195 ..      56     199 .. 0.66
   2 ?   -1.7   0.0         3   3.3e+03      82     106 ..     215     238 ..     213     252 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
     DUF2867  75 a...............ldffrveeltedemvleegdahlefrvsvveeeggsrlrvttlvkpngl 124
                 +               +++ r ++++++e++l e + hl+++ +++  +  s+l vt +v ++ l
  EHT99675.1 131 RcdqgwqslsggerqrVHIARALAQSPNEILLDEPTNHLDIHHQIQLMKLISELPVTSIVAIHDL 195
                 14444555555555669999************************999556688888888888865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3
     DUF2867  82 eeltedemvleegdahlefrvsvve 106
                  + t+de+++e +  +  frv+ + 
  EHT99675.1 215 AQGTPDEILTE-SLLWDVFRVKTQI 238
                 55677787777.7778888877766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001      0.11      23      39 ..      32      48 ..      19      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
      AAA_23 23 lItGpNGaGKTTildAi 39
                 + GpNG+GK+++l+ +
  EHT99675.1 32 GLLGPNGSGKSSLLRLL 48
                578**********9866 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.23       4      25 ..      33      54 ..      30     122 .. 0.86
   2 ?   -1.1   0.0       1.6   1.8e+03      18      48 ..     148     178 ..     146     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                EE--SSSSHHHHHHHGGGGBS- CS
       AAA_5  4 LvGppGtgKselaerlaaalnr 25
                L+Gp G+gKs+l + la + ++
  EHT99675.1 33 LLGPNGSGKSSLLRLLAGLRKQ 54
                9***************998743 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                 HGGGGBS--EEEEE--TT--HHHHH--B--. CS
       AAA_5  18 rlaaalnreveyvqltrdtteedlkgrreik 48 
                 ++a+al ++ ++++l + t+  d+  +++++
  EHT99675.1 148 HIARALAQSPNEILLDEPTNHLDIHHQIQLM 178
                 6889999999999999999998888888764 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0001      0.11       6      49 ..      33      75 ..      29      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                EEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHH CS
       SRP54  6 lvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLk 49
                l+G++G+GK + l  La l k+++ kvll   D   + A +QL+
  EHT99675.1 33 LLGPNGSGKSSLLRLLAGLRKQQKGKVLLDGKDLSSI-ARKQLA 75
                89***************************99998755.456665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014      0.15       1      35 [.      31      73 ..      31     127 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf........gvnlrdvaken 35
                ++l G+ G+GK++l + L+ + +         g  l+++a++ 
  EHT99675.1 31 VGLLGPNGSGKSSLLRLLAGLRKQqkgkvlldGKDLSSIARKQ 73
                6899**************5554112333455555555555554 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0002      0.22       3      56 ..      29      85 ..      27     104 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH....TTTTTTT--SSHHHH CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnv....RhgLnkdLgfseedR 56
                 +v l G  gsGKs++ + l+  L+++++  +lLdG  +    R++L + ++f e++ 
  EHT99675.1 29 ETVGLLGPNGSGKSSLLRLLA-GLRKQQKGKVLLDGKDLssiaRKQLARRVAFVEQHA 85
                578899**********98887.8999999999****9764445889999988887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2105.46
//
Query:       EHT99676.1  [L=344]
Description: iron(III) dicitrate transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-88  295.4  41.6    4.9e-88  295.1  41.6    1.1  1  FecCD     FecCD transport family
    6.6e-07   29.1  26.0    6.6e-07   29.1  26.0    2.0  2  ABC-3     ABC 3 transport family
  ------ inclusion threshold ------
      0.027   14.4   3.7      0.027   14.4   3.7    5.0  5  DctQ      Tripartite ATP-independent periplasmic transporters


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.1  41.6   8.2e-92   4.9e-88       2     312 .]      24     340 ..      21     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 295.1 bits;  conditional E-value: 8.2e-92
       FecCD   2 lllllllslllgavkispsevfeallgka.......dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalll 93 
                 l+++++l +++g+ +i+++ vf  +++k        +++++++++++rl r+l+a+++Ga+La++Ga+lQ++++N La+P++lG+s+ga+ gavl+++ 
  EHT99676.1  24 LVVVIALGVSVGELSIPLKSVFYTVTNKLgmtavpvNRIHESVIWDFRLSRALVAAFSGAGLAICGAVLQSLLKNALAEPYVLGVSAGASTGAVLIVVS 122
                 688999999*****************999********************************************************************** PP

       FecCD  94 llgslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllll.neealesilfwllGslsgaswskvllllvlllllll 191
                 +  ++++++l+l af ga++a+++v ll+ ++++  +++ iLaG+a s l++a+t++ + ++ n++++++++fwllGs+sg++w ++ l++v++l++l+
  EHT99676.1 123 G-VGAGAISLSLGAFTGAFAAFAFVALLT-NGARGGTERTILAGVAASQLFNAITAYTISTSaNAQQARDVMFWLLGSFSGVRWPEFQLVVVVVLVGLA 219
                 9.9**************************.***************************999888************************************ PP

       FecCD 192 lllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllspt 290
                 ++l++ar ld++++gd+tA+slG++v  vrl+l+ ++al+ta++v+++G igFvGL+vPh++r+++g+ h++ll+++a++Ga+l++lad+++r+l++p+
  EHT99676.1 220 VCLYYARALDAFTFGDDTAASLGIPVGVVRLVLFTATALMTATIVSMAGSIGFVGLVVPHVMRFFFGPLHSRLLVACAIAGAILMVLADIASRMLIAPQ 318
                 *************************************************************************************************** PP

       FecCD 291 elpvgivtaliGapffiylllr 312
                  lpvg+vtal+G+pff+++++r
  EHT99676.1 319 SLPVGVVTALVGVPFFAVIIYR 340
                 *******************986 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.5      0.31   1.9e+03     168     183 ..      14      29 ..       4      39 .. 0.52
   2 !   29.1  26.0   1.1e-10   6.6e-07      41     247 ..     119     326 ..      74     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.31
       ABC-3 168 lkllllalialavvva 183
                 + + +lal++l vv+a
  EHT99676.1  14 IAIAILALVVLVVVIA 29 
                 3333333333333333 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 1.1e-10
       ABC-3  41 aalpGvalayllgvnlllgailvgliaavalellkrktk..lkedtaigivlsvfl.alglvlvslikk..skvdldsyLfGniltisqedliliaiie 134
                 ++++Gv+ +   +++l+lga++ +++a  +++ll++ ++  ++  ++ g+ +s  + a+   ++s + +   + d++ +L+G+  ++   ++ l+++++
  EHT99676.1 119 IVVSGVGAG---AISLSLGAFTGAFAAFAFVALLTNGARggTERTILAGVAASQLFnAITAYTISTSANaqQARDVMFWLLGSFSGVRWPEFQLVVVVV 214
                 455566544...34467777766666656666666666622444566799988777588888998888877889************************* PP

       ABC-3 135 avvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiPaatArrltrslesllivAillglvsvvaGlllSy 233
                 +v l+++l+  + l ++tf  ++A++ g++v +++l+l++ +al  ++++ ++G i  + l ++P ++   ++   ++ll+  ++ g++ +v+  + S 
  EHT99676.1 215 LVGLAVCLYYARALDAFTFGDDTAASLGIPVGVVRLVLFTATALMTATIVSMAGSIGFVGL-VVPHVMRFFFGPLHSRLLVACAIAGAILMVLADIASR 312
                 ********************************************************98885.78***************99999999999999999998 PP

       ABC-3 234 yldlatGavivlva 247
                 +l ++ +  + +v 
  EHT99676.1 313 MLIAPQSLPVGVVT 326
                 88766553333333 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.5      0.13     8e+02      68      85 ..      14      32 ..       6      60 .. 0.55
   2 ?    0.3   0.1       0.1   6.1e+02      16      41 ..      63      88 ..      59      90 .. 0.85
   3 ?   -0.2   0.4      0.14   8.5e+02      71      96 ..     135     159 ..     105     196 .. 0.67
   4 ?   14.4   3.7   4.4e-06     0.027      68     123 ..     210     264 ..     201     269 .. 0.75
   5 ?    0.7   2.8     0.079   4.7e+02      51      84 ..     308     341 ..     279     343 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.13
        DctQ 68 iadl.lallfaavliwagw 85
                ia + lal++++v+i  g+
  EHT99676.1 14 IAIAiLALVVLVVVIALGV 32
                3333244444444444443 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.1
        DctQ 16 nsslpwteelarylfvwlvflgaala 41
                + s++w++ l+r+l+++   +g+a++
  EHT99676.1 63 HESVIWDFRLSRALVAAFSGAGLAIC 88
                567789********999999999887 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.14
        DctQ  71 llallfaavliwagwlevaaalfeet 96 
                 +++ +faa+ ++a+   + a++++e+
  EHT99676.1 135 AFTGAFAAFAFVALL-TNGARGGTER 159
                 333344444444444.4444444444 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 4.4e-06
        DctQ  68 iadllallfaavliwagwlevaaalfeettpvlglplwwvylvlpigaallalval 123
                 ++  ++l+ +av ++++ +  a  +++ t ++lg+p+++v+lvl+++ al++  ++
  EHT99676.1 210 VVV-VVLVGLAVCLYYARALDAFTFGDDTAASLGIPVGVVRLVLFTATALMTATIV 264
                 333.3333344555555558899999999**********************99776 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.079
        DctQ  51 dllverlpprvrrlleliadllallfaavliwag 84 
                 d+  ++l +     + ++++l+ + f+av+i+++
  EHT99676.1 308 DIASRMLIAPQSLPVGVVTALVGVPFFAVIIYRS 341
                 4555555555566677888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 2684.83
//
Query:       EHT99677.1  [L=332]
Description: putative ABC transporter periplasmic solute-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-38  133.3   0.1    1.2e-38  133.0   0.1    1.1  1  Peripla_BP_2   Periplasmic binding protein
  ------ inclusion threshold ------
      0.098   12.6   0.1        3.3    7.7   0.0    2.8  3  L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.1   1.4e-42   1.2e-38       1     237 [.      43     307 ..      43     308 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 1.4e-42
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG........GGGHHHHHHHS-EEE----T CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskgl.....gltdedeellksgiptvivessn 92 
                   +++l++ ++ei l+lG+ dk+v+ + ++  +l++ ++++a+v v +   +++E+++a  PD v ++ +l     + +++ e+++++gi+t+  +  +
    EHT99677.1  43 VVALGQNTAEIMLLLGLQDKMVASAFWPTKVLPELAEKNAKVPVLTVEIPTLESILAKNPDFVAAQIQLlmgpsSKVAKREDFESVGINTYLSPGMC 139
                   89********************************99999***************************9999**********************99988 PP

                   TS.................HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT...-EEEEEEEETTE...EEEE-TTSTTTHHHHTS-- CS
  Peripla_BP_2  93 tg.................eslkeqiralgellgledeaeklvaeidsklaaaksaidse..kpkpvlvfggade.ggyvvagsnsyigdlldalgi 169
                   +                  + ++e+i  ++++++ ed++++++++++++  a+++a ++   + + v++f+++ + ++ +v g n+  g ++d lg+
    EHT99677.1 140 ATkqntgdiygsrstlwnmAYVYEEIADFAKIFNVEDRGQQVINDFKKRESALRKAFPKGkkDLSFVFWFSSSSPtADAYVGGKNGASGFIADLLGG 236
                   8889999*****************************************************7777788888877779********************* PP

                   EESTTT--STT-EEE-HHHHHHH--SEEEEEEH.....HHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-HH CS
  Peripla_BP_2 170 eniaaeskkseyeeisaEqilasdpdvifvsgr.....aeadnktgleflkenpllaelpAvkngrVyaldss 237
                    n++ +  + e+ ++s+E i a++pdvi+v++      + +++ ++ +flk++p++++l Avk+g+++ +d +
    EHT99677.1 237 HNAITT--ETEWPTVSWESIIAANPDVIVVTSLdrnrwKLDSAEEKIKFLKSDPAVSQLDAVKKGHIVVMDGQ 307
                   ******..8***********************************************************99876 PP

>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00036       3.3       4      23 ..      68      88 ..      66      93 .. 0.91
   2 ?   -1.6   0.0       0.3   2.7e+03      11      24 ..     253     266 ..     250     271 .. 0.72
   3 ?    0.9   0.0      0.05   4.5e+02      30      43 ..     310     323 ..     300     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00036
                   HH.TTTTHHHHTT-TTSEEEE CS
  L51_S25_CI-B8  4 Fw.rknLprlkykNPavpivv 23
                   Fw +k Lp+l+ kN +vp+++
     EHT99677.1 68 FWpTKVLPELAEKNAKVPVLT 88
                   9*9***************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.3
                    HHHTT-TTSEEEEE CS
  L51_S25_CI-B8  11 rlkykNPavpivvr 24 
                    ++  +NP+v +v++
     EHT99677.1 253 SIIAANPDVIVVTS 266
                    56789***977665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.05
                    S-EEEEE-SS--B- CS
  L51_S25_CI-B8  30 gPallaiYfngrek 43 
                     P++++iY+ + ++
     EHT99677.1 310 NPTIRTIYGAEQVA 323
                    49******998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2329.25
//
Query:       EHT99678.1  [L=295]
Description: hypothetical protein CKS_1679 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-18   66.1   0.0      6e-18   65.0   0.0    1.6  1  Arm-DNA-bind_3   Arm DNA-binding domain
      9e-13   48.4   0.1    2.1e-11   43.9   0.0    2.7  3  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   6.7e-22     6e-18       1      73 [.       8      97 ..       8      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6.7e-22
  Arm-DNA-bind_3  1 LTdkaikaladsdkklpr.d..GLglrvtps...Gaktfvlryr...........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    L+d++i+++++ +k++   d  GL++r++ps   G+k +++ry+           lG+yp ++la+AR+ +++++al+aq iDP+++ ++
      EHT99678.1  8 LNDTQIRNTKPGEKEVSLfDgeGLFVRISPSakgGKKNWYFRYTvpttrkrtkmsLGTYPHLTLAQARSLRDQYLALLAQQIDPQQHNAE 97
                    79******88666444444499*******************************878*****************************98765 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.068   6.1e+02      72     125 ..      77     128 ..      48     143 .. 0.54
   2 ?    0.2   0.0     0.062   5.5e+02      19      41 ..     165     187 ..     148     214 .. 0.71
   3 !   43.9   0.0   2.4e-15   2.1e-11       3      75 ..     219     292 ..     217     295 .] 0.95

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.068
                      CTHHHHHHHHHHHHHHCHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S CS
  Phage_integrase  72 lseealellkellskaleeaeksellfaskrgkplsrqtvrkafkraveeagie 125
                      l +++l ll ++++ +  +aek ++l +  +++++ +  ++k++ + ++ +gi+
       EHT99678.1  77 LRDQYLALLAQQIDPQQHNAEKANALKV--ATEHTLQVVAKKWLDEKKRTSGIT 128
                      4455556666666655444444443322..224444444444444444444444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.062
                      HHHHHHHHHHHHHHHT--HHHHT CS
  Phage_integrase  19 lkirdklllellyetGlRisEll 41 
                      ++i+++ +le+l +   R +E+ 
       EHT99678.1 165 DPIEQRGILETLRRVISRLNEIF 187
                      35677777777777777777765 PP

  == domain 3  score: 43.9 bits;  conditional E-value: 2.4e-15
                      HHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHH CS
  Phage_integrase   3 ltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplsee 75 
                      l + e+ r+la+l + s  ++++ll+e+ + t +R +E+++ r+ d+d++n+ +++++  +K++k + vpls+e
       EHT99678.1 219 LPPSELPRFLATLANaSVRMETRLLIEWQLLTWVRPGEAVRARWADIDTDNRLWTIPADFMKMKKTHKVPLSKE 292
                      6789999******9999******************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2088.99
//
Query:       EHT99679.1  [L=160]
Description: trans-translation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-56  188.3   0.1    7.1e-56  188.1   0.1    1.0  1  SmpB      SmpB protein


Domain annotation for each model (and alignments):
>> SmpB  SmpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.1     4e-60   7.1e-56       1     144 []      14     157 ..      14     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.1 bits;  conditional E-value: 4e-60
                 EEE-CHHHTTSEEEEEEEEEB---HHHHHHHHH--EESSSEEEEEESSCEEEEESEE---S-.-SS----TT--EEBB--HHHHHHHHHHHHHHT-EEE CS
        SmpB   1 iakNkkarhdYeieetyeaGivLkGtEvkslragkvnlkdsyvkikngelfllnvhiseyek.gnifnhdpkrkrkLLlhkkeikklagkveekgltlv 98 
                 ia Nk+arh+Y+iee++eaG++L+G+Evkslragk+n++dsy+ +++ge++l++ ++++++  ++++ +dp+r+rkLLl+k+e+++l g+v+++g+t+v
  EHT99679.1  14 IAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRDGEAYLFGSTFQPLAVaSTHVVCDPTRSRKLLLKKRELDSLYGRVNREGYTVV 112
                 689**********************************************************9788888******************************* PP

                 EEEEEE.ESSEEEEEEEEEEC--SS--XXXXXXXXXXXXXXXXXXX CS
        SmpB  99 plklyfkkkglvKveialakgkklydkretlkerdakreieralke 144
                 +l+ly+ k+ ++K++i++a+gkk++dkr+++k+r+++ +++r++k+
  EHT99679.1 113 ALSLYW-KNVWCKLKIGVARGKKEHDKRNDIKDREWQMDKARIMKN 157
                 ******.889*********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1293.52
//
Query:       EHT99680.1  [L=144]
Description: ribosome association toxin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-33  114.2   0.0    5.4e-33  114.0   0.0    1.0  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    2.1e-09   37.8   0.0    2.4e-09   37.6   0.0    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
      0.084   12.7   0.0        0.1   12.5   0.0    1.1  1  DUF1857          Domain of unknown function (DUF1857)


Domain annotation for each model (and alignments):
>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0     9e-37   5.4e-33       1     130 []      10     135 ..      10     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 9e-37
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEEEEEEEEEEETTTEEECTTCCCCCEEEEEEEECTECCEEECEEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaesglsadlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslppnsggtrt 95 
                     vp +a q+y+lv+dv+ yp+flp+c+ ++vl+ +e+++ a++ v+++g++ +ft+r+tl  + +i+++lv+g+f++l g W++  l+    ++++
      EHT99680.1  10 VPFSAGQMYQLVNDVDAYPQFLPGCTGSRVLDASENQMTASVDVSKAGISKTFTTRNTLTDNQSIHMQLVDGPFRKLTGGWRFIDLG----DDAC 100
                     688999*********************************************************************************....9*** PP

                     EEEEEEEEE-SSCHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  96 kvalevdfkfaspllgalvgqvaervldellaale 130
                     kv+l+++f+f+  l++++ g ++++ ++ +++a++
      EHT99680.1 101 KVELSLEFEFTNMLVEMAFGRIFKELANSMVQAFT 135
                     *********************************95 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0     4e-13   2.4e-09       1     130 [.       1     134 [.       1     142 [. 0.71

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4e-13
                      EEEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSS.TTTEEEEECCCS...SEEEEEEEEEETTTTEEEEEEE.SSS-TSEEE CS
  Polyketide_cyc2   1 mvkvtvsvviaappekVwalvsdfenwprWhpevarveleggggpa.rgvegtvrvggr...gtvreelvevdpegrllsyrivkpvpvanyva 90 
                      m+++++s+ ++ ++ + + lv d +++p+  p+ + +++ +  ++  + +   v+++g     t+r +l++      ++ +++v + p+++ ++
       EHT99680.1   1 MAQISRSALVPFSAGQMYQLVNDVDAYPQFLPGCTGSRVLDASENQmTAS-VDVSKAGIsktFTTRNTLTDN----QSIHMQLV-DGPFRKLTG 88 
                      7899*******************************998776344422333.555555545222255555554....56999998.89******* PP

                      EEEEEECC.ETEEEEEEEEEEE.....E--TT--HHHHHHHHHHHH CS
  Polyketide_cyc2  91 twtvtpdg.ggtrvtwtgefda.....gplggpfekpaaakavkgd 130
                       w++ + g + ++v+ + ef++        +g + k++a ++v+++
       EHT99680.1  89 GWRFIDLGdDACKVELSLEFEFtnmlvEMAFGRIFKELANSMVQAF 134
                      ********556**********7632332222444455555555554 PP

>> DUF1857  Domain of unknown function (DUF1857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05       0.1      33     114 ..      28     120 ..       9     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
                 GGT-TT--EEEEEEE-SSEEEEEEEET.......EEEEEEEETTTEEEEEE---.....EEEEEEEEEEETT...EEEEEEEEEEE---.... CS
     DUF1857  33 qeFvpaiekceVleeeatvltRevtfkegg.p..vrevvtleepvrvdfeledg.....ssitniisegaeg...eLyltftfewklpeveeg 114
                  +F+p+ + ++Vl+ +++++t  v ++++g    ++ + tl+++++++ +l dg     +  +  i  g++    eL l f+f+  l e++ g
  EHT99680.1  28 PQFLPGCTGSRVLDASENQMTASVDVSKAGiSktFTTRNTLTDNQSIHMQLVDGpfrklTGGWRFIDLGDDAckvELSLEFEFTNMLVEMAFG 120
                 57*************************76333469******************9998776666777766666678999999999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1233.28
//
Query:       EHT99681.1  [L=97]
Description: putative RatA antitoxin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-34  118.0   0.2      2e-34  117.8   0.2    1.0  1  Ub-RnfH   RnfH family Ubiquitin
  ------ inclusion threshold ------
       0.11   13.2   0.1       0.21   12.3   0.1    1.5  1  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> Ub-RnfH  RnfH family Ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.2   2.3e-38     2e-34       1      83 []       4      86 ..       4      86 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.3e-38
     Ub-RnfH  1 ikveVvyalpekqvllelevpegttveeAieaSgilekfpeidlekakvGifgkavkldavLqegDRvEiYRpLiaDPkearr 83
                i+veVvyalpekq++  ++++eg+tve+Ai++Sg+le  p+idl+++kvGi+++ vkl++++qegDRvEiYRpLiaDPke rr
  EHT99681.1  4 ISVEVVYALPEKQYQQYVKLEEGSTVEQAIKKSGLLELRPDIDLASNKVGIYSHPVKLTDIVQEGDRVEIYRPLIADPKELRR 86
                79*******************************************************************************98 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.3e-05      0.21      13      70 ..      18      73 ..       8      77 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
                CEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGC.C.TTTSB--TTCEEEE CS
        ThiS 13 eeelelaegstvaelleaLgerypelalerrvavavNgeivpr.l.wldtelkdgDevai 70
                ++ + l+egstv++++++ g       l++ + +a N+  + +    l+ ++++gD+v+i
  EHT99681.1 18 QQYVKLEEGSTVEQAIKKSGLLE----LRPDIDLASNKVGIYShPvKLTDIVQEGDRVEI 73
                45667999**********99888....888999999988666655588***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 828.68
//
Query:       EHT99682.1  [L=115]
Description: small membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-26   91.7   0.7    2.2e-26   91.4   0.7    1.1  1  SmpA_OmlA       SmpA / OmlA family
  ------ inclusion threshold ------
      0.033   14.6   0.0       0.06   13.8   0.0    1.3  1  DUF3696         Protein of unknown function (DUF3696)
        0.2   11.7   0.0        0.3   11.2   0.0    1.3  1  Sulfolobus_pRN  Sulfolobus plasmid regulatory protein


Domain annotation for each model (and alignments):
>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.7   3.7e-30   2.2e-26       1      70 [.      35     104 ..      35     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.7e-30
                 .HHTTSHHHHT--TT-BHHHHHHHH-S-SEE-SSSSSEEEEEEEETTE.....EEEEEEEE-TTSBEEEE CS
   SmpA_OmlA   1 GnvvtqeqvdqlkpGmtkeqVryllGsPsltdtfdpnrwdYvynfkrggkaveqqvlavyFdddglvrsi 70 
                 Gn++  ++v+++++Gmt++qV y+lG+P+++d+f++n w+Yv+++ +g+++v+qq+l+++Fd +g++++i
  EHT99682.1  35 GNYLVANDVAKIHTGMTQQQVAYTLGTPMMKDPFGSNVWYYVFRQEPGNEKVKQQTLTLTFDRNGVLTNI 104
                 89*****************************************************************997 PP

>> DUF3696  Protein of unknown function (DUF3696)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     1e-05      0.06       9      37 ..      74     103 ..      73     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
     DUF3696   9 yfferdegkdsaidtevlsp.iddnGrisn 37 
                 y++ r+e+ +++   ++l+  +d+nG+++n
  EHT99682.1  74 YYVFRQEPGNEKVKQQTLTLtFDRNGVLTN 103
                 9**************************997 PP

>> Sulfolobus_pRN  Sulfolobus plasmid regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05       0.3       3      37 ..       5      39 ..       3      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5e-05
  Sulfolobus_pRN  3 kltlsekillilsrrcatleeleektGiekeellv 37
                     lt +  ++l+++ +c tle++  +  i++ + lv
      EHT99682.1  5 TLTAAAVVMLMMTAGCSTLERVVYRPDINQGNYLV 39
                    57888899**************9999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 940.64
//
Query:       EHT99683.1  [L=553]
Description: recombination and repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-19   68.7   0.0    6.6e-19   68.2   0.0    1.2  1  SMC_N     RecF/RecN/SMC N terminal domain
    4.9e-18   66.4   4.9    1.9e-16   61.2   4.9    2.4  1  AAA_23    AAA domain
    8.6e-06   25.4   0.0    1.9e-05   24.3   0.0    1.6  1  AAA_29    P-loop containing region of AAA domain
     0.0017   18.1   0.1     0.0097   15.7   0.0    2.2  2  AAA_15    AAA ATPase domain
     0.0037   17.8   5.0       0.95   10.0   0.0    3.5  3  ABC_tran  ABC transporter
     0.0049   16.7   0.0        1.1    9.0   0.0    2.5  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
     0.0049   17.1   8.1      0.029   14.6   0.0    4.2  4  AAA_22    AAA domain
  ------ inclusion threshold ------
      0.067   13.3   0.2      0.067   13.3   0.2    2.8  3  Vps51     Vps51/Vps67


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   2.9e-22   6.6e-19       1     216 [.       1     510 [.       1     514 [. 0.93

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 2.9e-22
                 EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTT.TC.HCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakkl.rs.eklsdlihkskekasvkkaeveitfdnedkklkiekeev 97 
                 +l +l+i+nF     ++ +++f++++tai+G+ G+GKs  +dA+  +LG r+   + r+ ++  dl  +  + +++ +a+  +    +d++   + +e+
  EHT99683.1   1 MLAQLTISNFAIV--RELDIDFQRGMTAITGETGAGKSIAIDALGLCLGGRADADMvRQgANRADLCAR-FQIKASPSAQRWL----SDNQ-LDDGNEC 91 
                 578999****988..79********************************98665542542456677776.4555555555444....3333.457899* PP

                 EEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
       SMC_N  98 sisrrvkrkgeseykingkevtkkevsellesagiske............................................................. 135
                  ++r ++ +g+s+ +ing+ v  +++++ l +  i+++                                                             
  EHT99683.1  92 LLRRVISADGRSRGFINGTAVPLSQLRD-LGQLLIQIHgqhahqlllkpdhqkhlldayaghdallvemraayqtwhqscrtlaqhqqqaqeresrrel 189
                 ***********************99987.5777888888899********************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EHT99683.1 190 lqyqlkelnefapqagefeqideeykrlanngqllstsqqalqlladsddtnlnsmlysarqmlseltalddkvsgvynlleeaaiqlseasdelrhyc 288
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EHT99683.1 289 dsldldpnrlyeleqrisrqialarkhhvtpeglpalhqqlldeaellsqqesdqeslqtlvtehyqaalqcaerlheqrsrfadelqqlitqsmhlls 387
                 *************************************************************************************************** PP

                 ..........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ..........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                                                           + SgGe + +ala+ + + +   +p +++De+d  +     + v ++l++  +++Q+
  EHT99683.1 388 mphgrfaidlvfnpdqltadgasridfqvttnpgqplqplgkVASGGELSRIALAIQVITARKMETPAMIFDEVDVGISGPTAAVVGKMLRQLGESTQV 486
                 *************************************************************************************************** PP

                 EEE-SSHHHCCC-SCEEEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 193 ivislreemlekadklvgvtkven 216
                 +++++  ++    ++ + v+k+++
  EHT99683.1 487 MCVTHLPQVAGCGHQHFFVSKETD 510
                 *****9988877777777766555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   4.9   8.4e-20   1.9e-16       1     195 [.       4     217 ..       4     382 .. 0.66

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 8.4e-20
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry.trsiererelsk 98 
                 +L+i+nf   r+ +idF +g+t+ItG++GaGK+  +dA+ l+L+g++     +  +g++++d    ++ k ++++++ +++++ ++ ++++   r +++
  EHT99683.1   4 QLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGLCLGGRADADMVR--QGANRADLCARFQIKASPSAQRWLSDNQLDDgNECL--LRRVIS 98 
                 599******************************************99776664..555555555444433333333333332222222233..333344 PP

      AAA_23  99 kkgkttkkaklelleideleqfisellgskkiilnlilflgqer..............feefelkdkke.............rleelekeleeledekk 170
                  +g+++ + ++  +  ++l+++ + l+++  +  +++l++++ +                        e              l++ +++ +e e +++
  EHT99683.1  99 ADGRSRGFINGTAVPLSQLRDLGQLLIQIHGQHAHQLLLKPDHQkhlldayaghdallV---------EmraayqtwhqscrTLAQHQQQAQERESRRE 188
                 44555666666666666666666666666666666666655555333333333223330.........0222333444444455555555555555555 PP

      AAA_23 171 llekleqekekek....eleeleeeleei 195
                 ll+ +++e+++ +    e+e++ ee + +
  EHT99683.1 189 LLQYQLKELNEFApqagEFEQIDEEYKRL 217
                 55555544444444455444444444433 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   8.6e-09   1.9e-05       1      47 [.       2      47 ..       2      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8.6e-09
      AAA_29  1 LkrlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalLv 47
                L++l + N    ++ +i+++ +g+t +tG++G+GKS  +DA+   L 
  EHT99683.1  2 LAQLTISNFAIVRELDIDFQ-RGMTAITGETGAGKSIAIDALGLCLG 47
                56777888888888889998.779*****************977665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.3e-06    0.0097       1      45 [.       1      44 [.       1      82 [. 0.92
   2 ?   -0.3   0.2      0.31   6.9e+02     256     256 ..     382     382 ..     193     496 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.3e-06
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdl 45
                M + +++i NF   ++ +id++  +t + G+ ++GKS +++al l
  EHT99683.1  1 M-LAQLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGL 44
                6.899*************************************966 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
      AAA_15 256 l 256
                  
  EHT99683.1 382 S 382
                 2 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00042      0.95      10      31 ..      22      42 ..      13      47 .. 0.80
   2 ?    2.8   0.4     0.068   1.5e+02      54     120 ..     163     235 ..     136     247 .. 0.77
   3 ?    5.2   0.1     0.012        28      96     129 ..     390     451 ..     296     462 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00042
                TTSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkll 31
                +g ++ai+Ge+GaGKS  + +l
  EHT99683.1 22 RG-MTAITGETGAGKSIAIDAL 42
                44.689**********988775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.068
                 HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqepqlfpeltvren......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvala 120
                  + ++++ ++l q++q  +e + r++      ++ +e++  + ++++++ + +++ ++++ LS  q+    la
  EHT99683.1 163 YQTWHQSCRTLAQHQQQAQERESRREllqyqlKELNEFAPQAGEFEQIDEEYKRLANNGQLLSTSQQALQLLA 235
                 5678888899999955555554444469877766666777788888888999999999999999999887777 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.012
                 G............................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSE CS
                 x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 e............................lkdtvvksspssLSgGqkqrvalarallkkpkl 129
                 +                             + ++++  ++  SgG+ +r+ala  +++++k+
  EHT99683.1 390 HgrfaidlvfnpdqltadgasridfqvttNPGQPLQPLGKVASGGELSRIALAIQVITARKM 451
                 355555555555555555555555544445556665566899************99999887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00049       1.1       1      22 [.      24      45 ..      24      65 .. 0.88
   2 !    5.7   0.0    0.0051        11     231     299 ..     424     493 ..     178     496 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00049
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +++++G  g+GKS  +dal l 
  EHT99683.1 24 MTAITGETGAGKSIAIDALGLC 45
                699****************876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0051
      AAA_21 231 elparel.SdGtkrl.lalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                   p+ ++ S G ++  +  +  + ++  +++  ++DE++ g+     + + ++l++l +  +Qv+++TH p
  EHT99683.1 424 LQPLGKVaSGGELSRiALAIQVITARKMETPAMIFDEVDVGISGPTAAVVGKMLRQLGE-STQVMCVTHLP 493
                 555555556666544145555555555566**************9999999***88888.8********87 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-05     0.029       3      37 ..      20      54 ..      17      85 .. 0.77
   2 ?    0.6   0.9      0.28   6.3e+02      23      70 ..     171     220 ..     132     261 .. 0.65
   3 ?    1.1   1.2       0.2   4.5e+02      91     113 ..     318     350 ..     267     388 .. 0.65
   4 ?   -0.3   0.0      0.52   1.2e+03      82     110 ..     442     478 ..     424     492 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
      AAA_22  3 ktagilvvtGesGtGKTtllrrlleqldeeakaee 37
                +++g++++tGe+G+GK+  +  l   l  +a+a++
  EHT99683.1 20 FQRGMTAITGETGAGKSIAIDALGLCLGGRADADM 54
                589***************99998877766666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
      AAA_22  23 rrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka 70 
                 r+l++  +++a+ +e r+e++ ++l++++    ++  ++++ +++++ +++
  EHT99683.1 171 RTLAQH-QQQAQERESRRELLQYQLKELNefaPQAGEFEQIDEEYKRLANN 220
                 444443.33333334677777777766665533333356666666644333 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.2
      AAA_22  91 v......ielliiDEaqhlr.s...eealeeLr 113
                 +       +  ++DEa+ l+ +   +e l++L+
  EHT99683.1 318 TpeglpaLHQQLLDEAELLSqQesdQESLQTLV 350
                 244444444446799999965145677777774 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.52
      AAA_22  82 leqalrarav.ielliiDEaqh.lrs.......eeale 110
                   q + ar++ ++++i DE++  + s        ++l+
  EHT99683.1 442 AIQVITARKMeTPAMIFDEVDVgI-SgptaavvGKMLR 478
                 44555566667999*****99766.3334444444444 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.7       1.2   2.6e+03      37      45 ..     209     217 ..     162     264 .. 0.59
   2 ?   -2.7   0.0       2.8   6.3e+03      55      82 ..     279     306 ..     276     309 .. 0.62
   3 ?   13.3   0.2     3e-05     0.067      28      76 ..     332     380 ..     315     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
       Vps51  37 aldselkal 45 
                 + d+e k+l
  EHT99683.1 209 QIDEEYKRL 217
                 333333333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
       Vps51  55 sasdtIrkmksemdkldqklselkqais 82 
                 +asd++r+  +++d   ++l el q+is
  EHT99683.1 279 EASDELRHYCDSLDLDPNRLYELEQRIS 306
                 6778888877777444445666666655 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 3e-05
       Vps51  28 easllseiraldselkalVydnYskLisasdtIrkmksemdkldqklse 76 
                 ea+lls+ +  +++l++lV ++Y+  ++ ++ +++ +s + +  q+l +
  EHT99683.1 332 EAELLSQQESDQESLQTLVTEHYQAALQCAERLHEQRSRFADELQQLIT 380
                 78999*****************************999998444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1204  (0.0671538); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 4043.77
//
Query:       EHT99684.1  [L=292]
Description: NAD kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-78  261.7   0.0    9.1e-78  261.4   0.0    1.1  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4   0.0   5.1e-82   9.1e-78       2     291 ..       8     271 ..       7     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 5.1e-82
                 EEEEESSCGGTCSHHHHHHHHHHHCT-..EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldalsrvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliivvGGDGTaldvarllqk 100
                 +giv +p++++a++++e+++rwL  +   +++v+ve++++++l                     d  + + a++ +++dl++vvGGDG++l +ar+l++
  EHT99684.1   8 IGIVGHPRHPTALTTHEMLCRWLTGK---GYRVIVEQQIAQELSLD------------------DVQTGTLAEIGQQADLAVVVGGDGNMLGAARVLAR 85 
                 89************************...*************8865..................*********************************** PP

                 CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE......EEEEEEESSEEEEEESSSSS-EEEEEEETTEEEEEEEESE CS
  NAD_kinase 101 aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgeediadiviensvlnevviirgpgstlielelyvdtelleadqldg 199
                 ++i v+g+n+G++gflt+++p++a  +l+++l+g++ ve+r++l+a++++ ++        +  s++nevv+++g+ +++ie+e+y+d+ +++++++dg
  EHT99684.1  86 YDIKVIGINRGNLGFLTDLDPDNAHHQLDDVLNGNYFVESRFLLEAQVCKTDC------SPRIGSAINEVVLHPGKVAHMIEFEVYIDEVFAFSQRSDG 178
                 *****************************************************......6777889********************************* PP

                 EEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-.SS--EEEEETTTEEEEE-TT-EEEEEEESSEEEEEE CS
  NAD_kinase 200 livstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva.srseallaldGseelelspgdevrvtasdkkfklir 291
                 li+stPtGstayslsaGgp+++P+++ai+ivp++Ph+ls+rp+V++sss++r+r++ +r+++ + +d++ +l +++g+ v v++s+++ +li+
  EHT99684.1 179 LIISTPTGSTAYSLSAGGPILTPSLDAITIVPMFPHTLSARPLVINSSSTIRLRFSaRRNDLEISCDSQIALPIQEGEDVLVRRSENHLNLIH 271
                 ********************************************************9********************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2269.81
//
Query:       EHT99685.1  [L=193]
Description: heat shock protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-50  171.0   4.4    2.3e-50  170.5   4.4    1.2  1  GrpE            GrpE
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.017   15.1   0.0    1.3  1  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
      0.015   15.3   0.9       0.99    9.4   0.2    2.3  2  Focal_AT        Focal adhesion targeting region
      0.018   14.4   6.1      0.024   14.0   6.1    1.1  1  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   4.4   5.1e-54   2.3e-50       9     166 .]      28     190 ..       3     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 5.1e-54
                 TTHHHHCCCCCCTTCHHHCTTSC....CCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC...HHH-HHHHHHHHHHHHHHH CS
        GrpE   9 eeedeeeeleeeleelekevkel....kekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak.eneeekslleGvemtlkql 102
                 e++ e +  +e++++le+e+++l     ++ lr++ae+en+r+rte ++e+a+kfa+ekfa++LLpv+D+leral+ a+ e+e+  s++eG+e+tlk+l
  EHT99685.1  28 ETAGEVDPRDERIAQLEAELAQLqngvRDAQLRAQAEIENVRRRTEMDIEKAHKFALEKFANELLPVIDSLERALELANkEDEKSASMVEGIELTLKSL 126
                 23333333344488888888877333356777********************************************9987777777************* PP

                 HHHHHHTT-EE---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE 103 lkiLekhgvekiepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                 l +  k+gve++  +g pF+p++h+a+s+ e+de+e+++v+ v+q+GY+l++r+lRpAmV V+k
  EHT99685.1 127 LGAVRKFGVEVVGETGVPFNPEVHQAMSMMESDEVEPNHVMMVMQRGYTLNGRLLRPAMVAVAK 190
                 **************************************************************97 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.9e-06     0.017      32     126 ..      40     141 ..      35     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.9e-06
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldt....rldtllt.nLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnldl 120
                   i aql++ l+++++ + + + + ++ ++++++    +++++ + +L++  n+l    d+l+ +L+  n++    +s v +i+ tL++ll a+  +  
    EHT99685.1  40 I-AQLEAELAQLQNGVRDAQLRAQAEIENVRRrtemDIEKAHKfALEKFANELLpviDSLERALELANKEDEKSASMVEGIELTLKSLLGAVRKFGV 135
                   3.7777777777777777776666666666665555555554436666666666677888899999999999*********************9988 PP

  Baculo_PEP_C 121 galsqe 126
                   + + ++
    EHT99685.1 136 EVVGET 141
                   888776 PP

>> Focal_AT  Focal adhesion targeting region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00022      0.99      76     128 ..      42      98 ..      28     103 .. 0.86
   2 ?    4.7   0.0    0.0064        29      29      58 ..     104     133 ..      98     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00022
    Focal_AT  76 vlskdlaelisamklaqqyssttldeeyrkem..lkaahvlavd..aknLldvvdsa 128
                 +l+++la+l + +++aq  ++ + ++  r++   ++ ah  a++  a +Ll v+ds 
  EHT99685.1  42 QLEAELAQLQNGVRDAQLRAQAEIENVRRRTEmdIEKAHKFALEkfANELLPVIDSL 98 
                 699********************88888876604467999999877899*****985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0064
    Focal_AT  29 vetakaeeyvslvksvglelrkLltsvdel 58 
                 + + + e+ +s+v  + l+l++Ll++v ++
  EHT99685.1 104 LANKEDEKSASMVEGIELTLKSLLGAVRKF 133
                 55666788899****************986 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.1   5.3e-06     0.024     112     205 ..      14     108 ..      10     133 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-06
     DUF4407 112 laeeqqeeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkak 205
                  +e+qqe+++ +++++a +    ++++a+lea++a+lq+ ++ a+ r++a+ +++++ ++ +  +    +   ++ a e    +d ++++l+ ++++
  EHT99685.1  14 SDEIQQEQQQPQDAETAGEvdpRDERIAQLEAELAQLQNGVRDAQLRAQAEIENVRRRTEMDIEKA--HKFALEKFANELLPVIDSLERALELANKE 108
                 334444444444444443366799*******************************99998876444..46677777788888888888888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1546  (0.086229); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1483.20
//
Query:       EHT99686.1  [L=229]
Description: uracil-DNA-glycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-27   95.1   0.0    5.5e-27   94.7   0.0    1.1  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0     3e-31   5.5e-27       7     151 ..      55     209 ..      51     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 3e-31
                 T-SEEEEESSTCHH.HHHHSSSS.-STT--HHHHHHHCCCCCCCHHG...............CTEEEEESSS....S.ECGCTTCCCCTCCHH.HHHHH CS
         UDG   7 dakvvivGeaPgae.edatglpFsgragnllrkllneaglkrdlese...............qgvyitnvvkcrppg.nrdtptsaeikacap.lleee 87 
                 d+kvvi+G++P++  ++a+gl+Fs+ +g  +++ l+++  + +++ +               qgv+++n+v+    + + ++ +s+  + +++ ++++ 
  EHT99686.1  55 DVKVVILGQDPYHGpNQAHGLAFSVLPGVPIPPSLQNMYKELQQDIPgfekpshgylaswaeQGVLLLNTVL----TvEAGKAHSHA-RLGWEtFTDRV 148
                 79**************************999999999877776666788999999*****************....6344799****.*********** PP

                 HHHHH....SSEEEEESHHHHHH..HHHHSCESCCCSCT..SEEEEES-SSTTTTT..TTTSHHHHHHHHH CS
         UDG  88 iellk....prlivllGktaakallgeklgklrgklleak.irvlplphPsplnrn..ffksnpelkaeaw 151
                 i++++      +++l+G +a+k+          g++++++ ++vl  phPspl+++  ff++++++k++a+
  EHT99686.1 149 IDAINaqreGVIFLLWGSHAQKK----------GSIIDRQrHHVLQAPHPSPLSAHrgFFGCQHFSKTNAL 209
                 ******995556***********..........******99****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1671.11
//
Query:       EHT99687.1  [L=127]
Description: pyruvate formate lyase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-22   78.7   0.1    7.7e-22   77.8   0.0    1.5  2  Gly_radical  Glycine radical


Domain annotation for each model (and alignments):
>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   4.3e-26   7.7e-22      18     106 .]      14     108 ..       5     108 .. 0.87
   2 ?   -2.6   0.1      0.45   8.1e+03      88      98 ..     112     122 ..     111     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.3e-26
                  HCCCCCCTSECGCETTEETTECC.CCHHHHHH.HCC-CCCCCCHHCCC....CCCT-SECEEEEETCCCHCCCCCSCGGGCCEEEESSSSEEECC CS
  Gly_radical  18 aslnSvakldyevaldgislnlk.avpdalgk.eeeerienlatlldg....yfeggfhlnvnvvsretLldAqehpekypqltiRVsGYavnFv 106
                  a +nS   ld+e a+++++++++ ++ d++    e +++++++ +++      +egg+hlnvnv++retL+dA++hpekypqltiRVsGYav+F+
   EHT99687.1  14 ALVNSFWLLDEETAQARCLCAVAgYQDDQIVAiGELGDVAYREVPVEIkpqvRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSGYAVRFN 108
                  6688989999999999999999988888888889999999999999884443446***************************************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.45
                  CGGGCCEEEES CS
  Gly_radical  88 pekypqltiRV 98 
                  pe++++++ R+
   EHT99687.1 112 PEQQRDVIART 122
                  99999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1005.84
//
Query:       EHT99688.1  [L=442]
Description: ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-46  158.9   0.0      2e-46  157.9   0.0    1.5  2  DEAD        DEAD/DEAH box helicase
    1.7e-30  105.6   0.2    1.2e-28   99.6   0.1    2.5  2  Helicase_C  Helicase conserved C-terminal domain
    6.7e-08   32.7   0.0    1.2e-07   31.9   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
    7.1e-05   23.2   0.1    0.00015   22.1   0.1    1.7  1  AAA_19      AAA domain
  ------ inclusion threshold ------
      0.015   15.5   0.1      0.065   13.5   0.0    2.1  2  AAA_22      AAA domain
      0.047   13.0   0.0      0.047   13.0   0.0    2.5  3  CMS1        U3-containing 90S pre-ribosomal complex subunit
      0.058   13.9   0.2      0.058   13.9   0.2    2.2  3  WSD         Williams-Beuren syndrome DDT (WSD), D-TOX E motif


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9   0.0   7.9e-50     2e-46       1     175 [.      28     198 ..      28     199 .. 0.96
   2 ?   -3.6   0.0       3.2   8.2e+03      85     104 ..     285     305 ..     258     306 .. 0.56

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 7.9e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t+iQa+aip +l+g+dvl++a+TG+GKT+a+l+p+lq++++   k++  p++li++PtreLa q++++++++ k+++l +  i+ggva  +  ++++++
  EHT99688.1  28 TAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFprKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSEN 126
                 79*************************************9889999999***********************************************999 PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvkk 175
                  d+vv+t+grl++ +++++++++ v++l+lDEadr+ld+gf ++i++i+ +++         +q++++SATl+ + +k+
  EHT99688.1 127 QDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETR-------WRKQTMLFSATLEgEHIKD 198
                 ****************************************************3.......3346********9888876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
                 SSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxx.xxxxxxx RF
        DEAD  85 vaardqlskldng.vdivvgt 104
                  ++++ +++l +g v+++v+t
  EHT99688.1 285 AKRNEAIKRLVEGrVNVLVAT 305
                 444444555543346666666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.035        91       4      73 ..      64     133 ..      60     175 .. 0.77
   2 !   99.6   0.1   4.9e-32   1.2e-28       2     111 .]     235     343 ..     234     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.035
                 HHHHHHHHHTTTTSEEEEEESSHH...HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   4 eallellkleeeggkilifvntid...rlek...vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ++ll++  +++   +ili ++t++   +      ++ l ++ ++ +a+++g     +  e++++     +dv++at
  EHT99688.1  64 QHLLDFPRKKSGPPRILILTPTRElamQ--VadqARELAKHTHLDIATITGGVAFMNHAEVFSEN----QDVVVAT 133
                 455555577888999*********7552..13457777677799999999998888888877765....4566666 PP

  == domain 2  score: 99.6 bits;  conditional E-value: 4.9e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k + l++ll ++ e  ++++fv++++rl++ v++l +  gi++ +l ge+ q +r+e++++  +g+++vL+atd+a+rGid+++v++Vinfd+pr+ ++
  EHT99688.1 235 KTKLLVHLL-KQPEVTRSIVFVRKRERLHElVSWL-HDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAARGIDVEDVSHVINFDMPRTADT 331
                 566777888.67888999**********8756666.6779*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y +riGRtgRag
  EHT99688.1 332 YLHRIGRTGRAG 343
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.5e-11   1.2e-07      30     169 ..      47     191 ..      15     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.5e-11
                 EESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH.... CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeee 122
                  ++TGtGKT  + + + ++ll   +++    ++l+l p+++l  q  ++ +++++ ++ +i +++ g   ++  e +s+n +++v+t+ +l + +    
  EHT99688.1  47 SAPTGTGKTAAYlLPALQHLLDFPRKKsgppRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNhAEVFSENQDVVVATTGRLLQYI---- 141
                 679*********5666666666655559********************************99998888887778899****************99.... PP

                 ....HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---....SEEEEEESS- CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgakkswreilekfke....avllglTATp 169
                  ++e ++  + + +i DEa r+ ++ + + i     e    +  + ++AT+
  EHT99688.1 142 -KEENFDCRAVETLILDEADRMLDMGFAQDIETIAGEtrwrKQTMLFSATL 191
                 .78888889999************976666633332223335555578886 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   5.9e-08   0.00015       1     119 [.      31     168 ..      31     255 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.9e-08
      AAA_19   1 qreave.alkekvllvtaGpGtGKTr.vlkhivallvelggvk..peeillvaftgrAakelrerlaalgae....atTiH.rlal........ldfdd 82 
                 q +a+  al+ + +l  a+ GtGKT   l  ++++l++  + k  p +il++++t+  a++++++ ++l ++    + Ti  ++a+         + d 
  EHT99688.1  31 QAAAIPpALEGRDVLGSAPTGTGKTAaYLLPALQHLLDFPRKKsgPPRILILTPTRELAMQVADQARELAKHthldIATITgGVAFmnhaevfsENQDV 129
                 66778779999999999********7358889999988654441169****************999877777777766666344446777776533333 PP

      AAA_19  83 lltealelleeaeeekklqeee.llivDEfq.dvdelqy 119
                  + ++  ll++ +ee++  ++  +li DE+  ++d    
  EHT99688.1 130 VVATTGRLLQYIKEENFDCRAVeTLILDEADrMLDMGFA 168
                 333444455555555554455559999998525555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.6e-05     0.065      12     108 ..      48     167 ..      47     203 .. 0.74
   2 ?   -1.5   0.0       1.1   2.7e+03      52      90 ..     195     230 ..     166     271 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
      AAA_22  12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka...............erlsseell.ealeqalrarav 91 
                 +++GtGKT  +   + q+  +   ++ +p+ +++  p  +     +d +rel++ ++l+  +               e+++       +l q++++   
  EHT99688.1  48 APTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRElamQVADQARELAKHTHLDIATitggvafmnhaevfsENQDVVVATtGRLLQYIKEENF 146
                 699******9999999998777666666666655555555477888889999999999998899999999*****995555544445666666666666 PP

      AAA_22  92 ....ielliiDEaqh.lrseea 108
                     +e li+DEa++ l  +  
  EHT99688.1 147 dcraVETLILDEADRmL-DMGF 167
                 66668**********66.4333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
      AAA_22  52 sskdllrellralglelkaerlsseellealeqalrara 90 
                   kd++++ll++  +   +    s++ +++++q  ++++
  EHT99688.1 195 HIKDFAERLLNEPVELEAD---PSRRERKKIQQWYHRAD 230
                 4555555555554432222...33333333333333333 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.047     121     209 ..      71     158 ..      49     171 .. 0.74
   2 ?   -2.0   0.0      0.73   1.9e+03      80     103 ..     309     332 ..     268     339 .. 0.71
   3 ?   -4.6   3.7       4.3   1.1e+04      14      29 ..     402     418 ..     385     433 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
        CMS1 121 aksngsPelLvltla...alRaaDlaralkklqtkdskvakLFakhikleesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDa 209
                  k +g P++L+lt +   a+ +aD ar l k       +a + +  +   ++  +  +++  + v t+gR+l+ ++ee + +  ++ ++lD 
  EHT99688.1  71 RKKSGPPRILILTPTrelAMQVADQARELAKHT--HLDIATITG-GVAFMNHAEVFSENQ-DVVVATTGRLLQYIKEENFDCRAVETLILDE 158
                 36678999****987333555555555555443..455676655.567777777777766.67799************************96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.73
        CMS1  80 DkyisasaikDttsftkPrtldnl 103
                  + i    +   + f  Prt d +
  EHT99688.1 309 ARGIDVEDVSHVINFDMPRTADTY 332
                 445555566666777777777766 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 4.3
        CMS1  14 ekgkkkks.ekkRskkk 29 
                  + +k k+ ek R kk+
  EHT99688.1 402 RAERKAKEeEKPRVKKR 418
                 22222221011222222 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.2   8.3e+03      75      85 ..      13      23 ..       5      25 .. 0.77
   2 ?   13.9   0.2   2.3e-05     0.058      52      98 ..     239     285 ..     151     286 .. 0.82
   3 ?   -3.0   0.1       4.2   1.1e+04      48      58 ..     402     413 ..     367     422 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.2
         WSD 75 eeLiesLnprg 85
                e+L+e+L+++g
  EHT99688.1 13 ESLLEALEEKG 23
                68999999998 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.3e-05
         WSD  52 eeeeeeevleegewavysskeqleeLiesLnprgvREsaLkealeke 98 
                  ++  ++   + ++ +++++e l+eL+++L+  g+R s L+ ++ + 
  EHT99688.1 239 LVHLLKQPEVTRSIVFVRKRERLHELVSWLHDAGIRTSYLEGEMVQA 285
                 555556666678899*************************9999875 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.2
         WSD  48 ekrr.eeeeeee 58 
                 +++r ++eee++
  EHT99688.1 402 RAERkAKEEEKP 413
                 222223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3371.94
//
Query:       EHT99689.1  [L=249]
Description: putative S-adenosyl-L-methionine-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-11   43.1   0.0    4.7e-11   42.5   0.0    1.3  1  MTS              Methyltransferase small domain
    9.5e-08   32.7   0.0    1.7e-07   31.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.1e-06   28.6   0.0    1.7e-06   27.9   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      1e-05   25.3   0.0    1.3e-05   25.0   0.0    1.2  1  UPF0020          Putative RNA methylase family UPF0020
    2.1e-05   24.1   0.1    3.2e-05   23.5   0.1    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    3.1e-05   23.2   0.0    4.2e-05   22.8   0.0    1.1  1  Methyltransf_3   O-methyltransferase
    7.4e-05   22.6   0.0    0.00016   21.6   0.0    1.5  2  Methyltransf_23  Methyltransferase domain
    0.00045   19.6   0.0     0.0006   19.2   0.0    1.1  1  Methyltransf_10  RNA methyltransferase
     0.0055   16.5   0.0     0.0078   16.0   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0059   16.5   0.1      0.011   15.6   0.1    1.5  1  Methyltransf_18  Methyltransferase domain
     0.0072   15.4   0.0      0.011   14.8   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
     0.0076   16.2   0.0       0.01   15.8   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   16.0   0.0      0.034   14.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      0.066   13.0   0.0        0.1   12.5   0.0    1.1  1  PRMT5            PRMT5 arginine-N-methyltransferase
       0.11   12.0   0.1       0.17   11.3   0.1    1.2  1  Carb_kinase      Carbohydrate kinase


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     4e-14   4.7e-11      33     110 ..      50     132 ..      37     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4e-14
                 SEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST..TS-EEEEEE---STTT CS
         MTS  33 gkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle..vevvasdvleeve..ekkfdlivsNPPfhag 110
                 +++lD+G+G G+++++la+++ +   +++v+ da A + a en  ++  +  ++v+++d+ + +e  + ++ livsNPP+ a 
  EHT99689.1  50 KRILDIGTGSGLIALMLAQRTHSDVvIDAVELDADAAQQASENDCQSPWAarIHVHQQDIAQWAEnsNTRYSLIVSNPPYFAP 132
                 67****************98776555***********999999777766658********9876644789*********8654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.4e-10   1.7e-07       1      71 [.      52     126 ..      52     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.4e-10
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTT.TEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedg.sfDlvvss 71 
                      +Ld+G+G+G ++l+la+r + +  + +v++++++ ++a e+  ++ +  +++++q+d+ ++ ++++ ++ l+vs+
       EHT99689.1  52 ILDIGTGSGLIALMLAQRTHsDVVIDAVELDADAAQQASENDCQSPWaaRIHVHQQDIAQWAENSNtRYSLIVSN 126
                      8*****************9447888899999999999999887755577***********987555499999984 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.4e-09   1.7e-06       5      93 ..      50     159 ..      48     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.4e-09
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAren.aqklgldnveFeqgdiee.leklledekfDlilsn............... 81 
                      +r+lD+G+G+G +++ la++  ++  +  ++ +++a ++A en +q+    +++++q+di + +e++    ++ li+sn               
       EHT99689.1  50 KRILDIGTGSGLIALMLAQRTHSDVVIDAVELDADAAQQASENdCQSPWAARIHVHQQDIAQwAENS--NTRYSLIVSNppyfapgvacstsar 141
                      589****************9999999**************99615555555***********88865..589*******888888888777777 PP

  Methyltransf_31  82 ......evlnaladpdki 93 
                            ++ln+++ + ++
       EHT99689.1 142 dsaratGTLNHQTLLRCA 159
                      777666666666665554 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.1e-08   1.3e-05      72     131 ..      69     129 ..      37     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.1e-08
                 HHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE---- CS
     UPF0020  72 earaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPY 131
                 +++ ++ + +++ld+ + q+a eN+ +  ++ +i++ q d+a+   +++  + +iv+npPY
  EHT99689.1  69 RTHSDVVIDAVELDADAAQQASENDCQSPWAARIHVHQQDIAQWAeNSNTRYSLIVSNPPY 129
                 4456777999**********************************9666679********** PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.7e-08   3.2e-05     162     233 ..      49     126 ..      41     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.7e-08
        PrmA 162 geevlDvGtGSGiLaiaaakLgakkvv..avDiDevAvkvakeNaelNkveaklevalseellk.....eekadvivaN 233
                  +++lD+GtGSG++a+  a+  +++vv  av +D  A + a eN  +   +a+++v++ +++ +     ++++ +iv+N
  EHT99689.1  49 VKRILDIGTGSGLIALMLAQRTHSDVVidAVELDADAAQQASENDCQSPWAARIHVHQ-QDIAQwaensNTRYSLIVSN 126
                 5789***********998888888776669************************9975.44443334457889999998 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.5e-08   4.2e-05      26     108 ..      28     109 ..       5     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.5e-08
                     TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H CS
  Methyltransf_3  26 lsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegda 108
                        m+v++d g +L+    + + kr+l+iG+  G  +L++a+    D  i a++ d +a++ a +   ++++a +i++++ d 
      EHT99689.1  28 RCAMKVGTD-GILLGAWAPVAGVKRILDIGTGSGLIALMLAQRTHSDVVIDAVELDADAAQQASENDCQSPWAARIHVHQQDI 109
                     567888865.889999999**********************************************************999875 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.3e-07   0.00016      24      89 ..      50     126 ..      12     127 .. 0.80
   2 ?   -2.7   0.0       3.9   4.7e+03      97     120 ..     151     174 ..     149     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.3e-07
  Methyltransf_23  24 grvLdiGcGtGillevlrengf...svtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlr 89 
                      +r+LdiG+G+G  +  l+++ +    +++v+l+  a + a+         a+  +++q  +q a++++ ++ lIv++
       EHT99689.1  50 KRILDIGTGSGLIALMLAQRTHsdvVIDAVELDADAAQQASendcqspwAARIHVHQQDIAQWAENSNTRYSLIVSN 126
                      69*********8888888887754445588888777777779****99777777777776677777888*****986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.9
  Methyltransf_23  97 dppellrqiatllkpgGylllsep 120
                      ++  llr++a l++++G + +  p
       EHT99689.1 151 NHQTLLRCAALLIEEEGFFCVILP 174
                      567788888888888888766555 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     5e-07    0.0006     103     208 ..      49     150 ..      36     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5e-07
                      --EEEEES-TTTTHHHHHHHHHH--EEE.EEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS----- CS
  Methyltransf_10 103 qvraldiGvGanCiyPllGvteyGWrfv.gsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhaslaeak 195
                       +r+ldiG+G+  i  +l +  +    + + e+d  + ++a+ +  +    ++ i++ +    + i +   ++n ry + + nPP++a   +  
       EHT99689.1  49 VKRILDIGTGSGLIALMLAQRTHSDVVIdAVELDADAAQQASENDCQS-PWAARIHVHQ----QDIAQWAENSNTRYSLIVSNPPYFAPGVACS 137
                      689***********9999887666554427799999999999886655.5777787765....568888889999*************888776 PP

                      -------...--- CS
  Methyltransf_10 196 agserklknlgka 208
                      ++++   +  g +
       EHT99689.1 138 TSARDSARATGTL 150
                      6666555555554 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.5e-06    0.0078      73     132 ..      48     108 ..      38     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.5e-06
                 TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHH.HHHCTTCSEEEEES- CS
        PCMT  73 kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrn.lkkldlenvivvvgD 132
                  ++r+L++G+GsG  + +la+  +++  + ++e  ++ +++a++n  +   +++++v+  D
  EHT99689.1  48 GVKRILDIGTGSGLIALMLAQRTHSDVVIDAVELDADAAQQASENdCQSPWAARIHVHQQD 108
                 5789********************9998889998888877766651444445577777766 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   9.6e-06     0.011      16      80 ..      50     115 ..      41     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.6e-06
  Methyltransf_18  16 srvaDiGtDHgylpiylvkegkakkvi.asDinegplekakeniekagledkievrlsdGleklke 80 
                      +r++DiGt  g+++++l+++ + + vi a+++ + + ++a en  ++    +i+v+ +d  +  ++
       EHT99689.1  50 KRILDIGTGSGLIALMLAQRTHSDVVIdAVELDADAAQQASENDCQSPWAARIHVHQQDIAQWAEN 115
                      699********************9998799*************99999999999999887776664 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.6e-06     0.011      33     112 ..      51     129 ..      46     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.6e-06
                 EEEEES-TTTCCHHHHHCC-.SEEE..EE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHHCTTTCCCCEEEEEEE--T CS
      RrnaAD  33 tvleigpGkGilTeeLakra.kqvv..vlElderLakllqkkls...kdeklkvvhqDflkfetpeevtekdsihqeflvvanlPy 112
                  +l+ig+G G+    La+r    vv  ++Eld + a+  +++      + ++ v +qD+ +++  ++        +  l+v+n Py
  EHT99689.1  51 RILDIGTGSGLIALMLAQRThSDVVidAVELDADAAQQASENDCqspWAARIHVHQQDIAQWAENSNT-------RYSLIVSNPPY 129
                 69******************655554568*******99998433677899************998844.......55577777776 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.6e-06      0.01      26      97 ..      49     117 ..      42     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.6e-06
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatsskt 97 
                       ++++D+G G g  + +la+ +++  + + ++++ ++ +++a++ + +    +++r++ ++++i++  +++ 
       EHT99689.1  49 VKRILDIGTGSGLIALMLAQ-RTHSDVVIDAVELDADAAQQASENDCQSP--WAARIHVHQQDIAQWAENSN 117
                      689*****************.555799999**********9999887777..***********999876443 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.8e-05     0.034       1      54 [.      53     111 ..      53     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-05
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl..kvefvvadaek 54 
                      Ld+G+G+G++a  la+r      + +v+l++ + ++a+e+  +++   ++ ++++d+ +
       EHT99689.1  53 LDIGTGSGLIALMLAQRThsdVVIDAVELDADAAQQASENDCQSPWaaRIHVHQQDIAQ 111
                      8**************76655555568888888888898888888888999999999987 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.4e-05       0.1      71     143 ..      55     125 ..      45     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.4e-05
                 ES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHTTCCGCEEEES-CCCCCHCC..-ECEEEE CS
       PRMT5  71 vGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneekWeekveviksdmrelkaee..kvdllvs 143
                 +G+G G  +  al  +++t+ ++v i avE   +a  + +++  ++ W+ +++v ++d+ ++ +++  ++ l+vs
  EHT99689.1  55 IGTGSGL-I--ALMLAQRTH-SDVVIDAVELDADAAQQASENDCQSPWAARIHVHQQDIAQWAENSntRYSLIVS 125
                 5666653.3..344455555.78************999999978899***************9887557889988 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014      0.17     194     230 ..      59      94 ..      56     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                  HHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT- CS
  Carb_kinase 194 aGligalLaqneasyeaaiaaawlhgaasdeaaekkg 230
                  +Gli+++Laq   + + +i a++l + a+++a+e+  
   EHT99689.1  59 SGLIALMLAQRT-HSDVVIDAVELDADAAQQASENDC 94 
                  8*********98.*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1851.45
//
Query:       EHT99690.1  [L=541]
Description: quinolinate synthase, L-aspartate oxidase (B protein) subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-99  333.3   1.5    2.9e-99  333.0   1.5    1.1  1  FAD_binding_2   FAD binding domain
    6.2e-15   55.3   0.1    1.5e-14   54.1   0.1    1.6  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    1.6e-09   37.4   0.2    2.1e-05   23.9   0.0    2.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    8.7e-08   32.1   5.5    4.7e-06   26.4   5.3    2.3  1  DAO             FAD dependent oxidoreductase
      2e-05   24.0   0.5      0.064   12.5   0.2    2.9  2  Thi4            Thi4 family
     0.0002   20.8   0.2    0.00034   20.0   0.2    1.4  1  FAD_binding_3   FAD binding domain
    0.00063   19.9   1.3     0.0018   18.4   0.2    2.3  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.003   16.7   0.1     0.0061   15.6   0.1    1.5  1  Lycopene_cycl   Lycopene cyclase protein
  ------ inclusion threshold ------
      0.013   14.2   0.2       0.23   10.1   0.2    2.3  2  HI0933_like     HI0933-like protein
      0.033   13.5   0.1        4.5    6.5   0.0    2.3  2  GMC_oxred_N     GMC oxidoreductase
      0.081   12.1   0.1          3    6.9   0.0    2.2  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.18   12.6   0.0       0.35   11.7   0.0    1.5  1  GARS_N          Phosphoribosylglycinamide synthetase, N domai


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.0   1.5  1.9e-102   2.9e-99       1     417 []      12     394 ..      12     394 .. 0.95

  Alignments for each domain:
  == domain 1  score: 333.0 bits;  conditional E-value: 1.9e-102
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv+++GsG+AGL+ Al++a + + v+v++k+q+ +g+t ++qGgi+av       +++ ds+++h++dtl a+++l+d+++v +++++a++ v++L
     EHT99690.1  12 DVLIVGSGAAGLSLALRLASHYR-VTVLSKAQVNEGSTLYAQGGIAAVF------DET-DSVDSHVEDTLIAGAGLCDREAVSFVASNARHCVQWL 99 
                    9*****************99866.*************************......445.************************************* PP

                    HHTT----BCCTS....SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTT.......EEEEEEEE CS
  FAD_binding_2  97 eelgvpfsrtedg....pvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.vdfqerteadeLivedg.......rvtGavve 180
                     ++gv f+++++     ++++++ Gg+s++ r+lh  ada      tg+++  +lv +a++++ ++++ert+a++Li  d+       r+ Ga+++
     EHT99690.1 100 IDHGVAFDTDPQAggemRYHLTREGGHSHR-RILH-SADA------TGREVETTLVGQALRHPnIRILERTNAVDLILSDKlglpgprRIMGAWIW 187
                    *********5544569**************.****.9999......********************************9889999999******** PP

                    ETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-E CS
  FAD_binding_2 181 npesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgi 276
                    n++ +r ++++a+avvlatgG+ +          ++++ttn+  ++Gdg+a+a+rag+++++  +e+ qfhPt+l+ ++ ++  L+tealrgeG++
     EHT99690.1 188 NRNRERVETCQARAVVLATGGAAK----------VYQYTTNPDVASGDGIAMAWRAGCRVAN--LEFNQFHPTCLFHPQAQNF-LLTEALRGEGAW 270
                    ***********************9..........****************************..************4444444.688********* PP

                    EE-TTSSBTH......GGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EE CS
  FAD_binding_2 277 lvdkdGrrFm......nelasrdvvsrailekeiaeggseanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvv 366
                    lv+ dG rFm      +ela+rd+v+rai  +e+++ g  +++yld+sh  +++ ++++++ i+e++ + ++      +d ++  ip       vv
     EHT99690.1 271 LVRPDGSRFMpdfderAELAPRDIVARAID-HEMKRLGV-DCMYLDISH-QPPAFIRSHFPMIYEKLLT-FG------FDLTKDRIP-------VV 349
                    ******************************.99998998.9********.************9999988.77......7888888**.......** PP

                    EEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 367 paqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    pa+hyt+gGv++d +gr+       i+ LYA+Gev  +g+hganrl++ns+
     EHT99690.1 350 PAAHYTCGGVVVDRHGRT------DIDCLYAIGEVSYTGLHGANRLASNSV 394
                    ******************......*************************97 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1     1e-17   1.5e-14       2      88 ..     443     523 ..     442     531 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 1e-17
                     HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-S CS
  Succ_DH_flav_C   2 keLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfpe 88 
                     +eL+ +m+++vg++Rt ++L++al++++ l++++++     + +  N    + lel+nl+++Ae+++++Al+RkESrG H+  d+p+
      EHT99690.1 443 HELRLFMWDYVGIVRTTKRLERALRRISLLQQEIDEYYR--HFRLSN----NLLELRNLVQVAELMVRCALQRKESRGLHFIRDYPD 523
                     79999****************************996554..444444....5789******************************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.4e-08   2.1e-05       2     113 ..      12     212 ..      11     226 .. 0.84
   2 !    9.8   0.0   0.00028      0.41     256     278 ..     357     379 ..     346     395 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.4e-08
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH...................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias...................................... 57 
                  dv+++G+G+AGl++al+la   ++vt+++     eg +l+ +  ++ ++ ++ +  + ++                                      
   EHT99690.1  12 DVLIVGSGAAGLSLALRLAS-HYRVTVLSkaqvNEGSTLYAQGGIAAVFDETDSVDSHVEdtliagaglcdreavsfvasnarhcvqwlidhgvafdt 108
                  89*****************9.789999977788888889999999999999998888777999************99999999999999999999999 PP

                  ...........................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC...........TCEEEEEES CS
                  ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx RF
  Pyr_redox_2  58 ...........................................evvkklnqgielllgeevvkidpgkkkvklekkke...........gdeekiayd 101
                                                             +       +i+ l ++++v+++    k+ l   ++           +  e+ ++ 
   EHT99690.1 109 dpqaggemryhltregghshrrilhsadatgrevettlvgqalR-----HPNIRILERTNAVDLILSD-KLGLPGPRRimgawiwnrnrERVETCQAR 200
                  99999999999999999999999998888888888877654432.....2457777777788887777.78887777799999999988888899999 PP

                  EEEE---EEE-B CS
                  xxxxxxxxxxxx RF
  Pyr_redox_2 102 klvlAtGssprd 113
                  ++vlAtG+ ++ 
   EHT99690.1 201 AVVLATGGAAKV 212
                  999999987765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00028
                  TEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtnvpgiyaiGDva 278
                  gg+vvd+++rt ++ +yaiG v 
   EHT99690.1 357 GGVVVDRHGRTDIDCLYAIGEVS 379
                  99*******************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   5.3   3.2e-09   4.7e-06       1      92 [.      12     109 ..      12     222 .. 0.52

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.2e-09
                 EEEEECTSHHHHHHHHHHHHTT.EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH................HHHHHHHHHHHHHHHHHHHHSSTTS.E CS
         DAO   1 dvviiGGGiiGlstAyeLarrg.VtllekgdiagsgaSgrnsgllhsglrylpeas................elarlslealeelreleeelgidid.y 81 
                 dv+i+G+G +Gls A+ La +  Vt+l k+ ++ +g++  ++g +++ ++++ +                  e              + ++++ ++  +
  EHT99690.1  12 DVLIVGSGAAGLSLALRLASHYrVTVLSKA-QVNEGSTLYAQGGIAAVFDETDSVDshvedtliagaglcdrE-----------AVSFVASNARHCVqW 98 
                 8*****************98856*******.****************77544432133443333222222221...........222222233333323 PP

                 EEEEEEEEESS CS
         DAO  82 rrtGllslaad 92 
                      +   +d
  EHT99690.1  99 LIDHGVAFDTD 109
                 32222222222 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   4.3e-05     0.064      17      54 ..      10      46 ..       7      60 .. 0.78
   2 !    8.1   0.0   0.00096       1.4      97     134 ..     140     183 ..      56     218 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES.SSS-- CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer.svspG 54
                + Dv+ivG+G++GL+ a  la +   +v++l + +v  G
  EHT99690.1 10 QCDVLIVGSGAAGLSLALRLASH--YRVTVLSKaQVNEG 46
                57*******************99..88888764145555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00096
                 HHHHHHHHHHHHTSTTEEEEESEEEEEEEEET.....B.TEEEE CS
        Thi4  97 alftstllskvlqlanvkllnavaveDlivre.....g.egvaG 134
                  ++ +tl+ ++l  +n+++l+ + + Dli+ +     g +++ G
  EHT99690.1 140 REVETTLVGQALRHPNIRILERTNAVDLILSDklglpGpRRIMG 183
                 47889*************************99444443344444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   2.3e-07   0.00034       1      34 [.      10      42 ..      10      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.3e-07
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   ++dVlIVG+G aGl+lal L+++  rv+++ k +
     EHT99690.1 10 QCDVLIVGSGAAGLSLALRLASH-YRVTVLSKAQ 42
                   59*********************.9****99976 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   1.2e-06    0.0018       1      28 [.      15      41 ..      15      45 .. 0.93
   2 ?   -1.7   0.1       2.4   3.5e+03      24      38 ..     105     119 ..     102     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   IvG+G++Gl++A +La + ++v++l k+
     EHT99690.1 15 IVGSGAAGLSLALRLASH-YRVTVLSKA 41
                   9****************8.9***99886 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
                    EE-SSSSSSGGG-EE CS
  NAD_binding_8  24 llekrdrlGGraasy 38 
                     +++ ++ GG ++  
     EHT99690.1 105 AFDTDPQAGGEMRYH 119
                    699999999998765 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.1e-06    0.0061       1      28 [.      12      38 ..      12      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvv 28
                   Dv+++G+G+AglslA rl ++++++ v+
     EHT99690.1 12 DVLIVGSGAAGLSLALRL-ASHYRVTVL 38
                   9*****************.666666654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00015      0.23       2      33 ..      12      42 ..      11      57 .. 0.82
   2 ?    1.3   0.0     0.073   1.1e+02     151     166 ..     195     210 ..     186     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 dv+++G GaAGl  A+++a+   rV++l ka+
   EHT99690.1 12 DVLIVGSGAAGLSLALRLAS-HYRVTVLSKAQ 42
                 8*****************65.57788887764 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.073
                  EEEEESEEEE----SS CS
  HI0933_like 151 eeleadklvlAtGGlS 166
                  e+++a+++vlAtGG++
   EHT99690.1 195 ETCQARAVVLATGGAA 210
                  7899**********86 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0      0.01        16       2      28 ..      12      38 ..      11      72 .. 0.84
   2 ?    6.5   0.0     0.003       4.5     194     257 ..     142     209 ..      96     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.01
  GMC_oxred_N  2 delveggGsagsvvAaRLsedpstsvl 28
                 d l++g+G+ag  +A RL+ + + +vl
   EHT99690.1 12 DVLIVGSGAAGLSLALRLASHYRVTVL 38
                 789****************98877775 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.003
  GMC_oxred_N 194 tarawLrpalerpnleiltgakaekiil.....egrkkravGVeasdkkgtvkrlvvaakevvvaaGal 257
                  ++++ + +al++pn +il++++a  +il      +  +r++G  + + +++ +  + +a+ vv+a G +
   EHT99690.1 142 VETTLVGQALRHPNIRILERTNAVDLILsdklgLPGPRRIMGAWIWNRNRE-RVETCQARAVVLATGGA 209
                  567788899*******************9999977899****999999999.77888889999998865 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.002         3       2      28 ..      10      35 ..       9      44 .. 0.85
   2 ?    2.9   0.0     0.034        50     140     162 ..     190     212 ..     185     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
  K_oxygenase  2 ilDligiGiGpsnLsLailleevkkel 28
                 ++D+ ++G G++ LsLa++l+++  ++
   EHT99690.1 10 QCDVLIVGSGAAGLSLALRLASHY-RV 35
                 68******************9998.44 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.034
  K_oxygenase 140 aegeeeelearnlvlgvGtepki 162
                  ++++ e+++ar++vl++G+ +k+
   EHT99690.1 190 NRERVETCQARAVVLATGGAAKV 212
                  45667889999999999988776 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.35       2      38 ..      12      60 ..      11      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                EEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG............T CS
      GARS_N  2 kvLvvGsGGRehalawklaqspkvekvyvapgNagt............e 38
                 vL+vGsG+   +la +la++ +v+ +  a+ N+g             +
  EHT99690.1 12 DVLIVGSGAAGLSLALRLASHYRVTVLSKAQVNEGStlyaqggiaavfD 60
                59********************************996655544444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3709.01
//
Query:       EHT99691.1  [L=192]
Description: RNA polymerase, sigma 24 (sigma E) factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-19   66.9   0.1    2.1e-18   65.7   0.1    1.7  1  Sigma70_r4_2  Sigma-70, region 4
    3.3e-17   62.0   0.2      6e-17   61.2   0.2    1.5  1  Sigma70_r2    Sigma-70 region 2
    5.3e-10   38.7   0.0    1.1e-09   37.7   0.0    1.5  1  Sigma70_r4    Sigma-70, region 4
    1.4e-07   31.6   0.1    4.9e-07   29.8   0.1    1.8  1  Sigma70_ECF   ECF sigma factor
     0.0022   17.7   0.0     0.0059   16.4   0.0    1.7  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.074   13.1   0.0       0.18   11.9   0.0    1.7  1  HTH_16        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   7.1e-22   2.1e-18       3      53 ..     130     180 ..     128     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 7.1e-22
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkk 53 
                    + + +++Lpe+ r++++lr+l+glsy+EIA ++++++gtV+sr++RAr++
    EHT99691.1 130 IVFRTIEALPEDLRMAITLRELDGLSYEEIAVIMDCPVGTVRSRIFRAREA 180
                   56689********************************************87 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.2     2e-20     6e-17       1      70 [.      25      91 ..      25      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2e-20
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                lv ry+ +v +l+ r+++sg d+ D+vQe f++++ra+++f+ + + +f +wl+ria n+a+++l  ++r
  EHT99691.1 25 LVIRYQHKVASLVSRYVPSG-DVPDVVQESFIKAYRALDSFR-GDS-AFYTWLYRIAVNTAKNYLVAQGR 91
                5679***************9.*********************.999.9*****************98887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   3.5e-13   1.1e-09       2      47 ..     135     180 ..     134     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.5e-13
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrk 47 
                 ++ Lpe+ r+ ++lr ++gl++eEI+ +++ + ++Vr++++rA++ 
  EHT99691.1 135 IEALPEDLRMAITLRELDGLSYEEIAVIMDCPVGTVRSRIFRAREA 180
                 578****************************************986 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   1.6e-10   4.9e-07       7     181 ..      10     183 ..       6     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.6e-10
  Sigma70_ECF   7 lleqvkdGdaeaaeqllelvydeLrrlagsklknerreetledtaLvfeaflrlvdkekfpdlsgr..dhlfalaaeamrrilidhaRrrkrqkRGGd 102
                  l+e v++Gd++a + l  +++ ++ +l+++ +    ++++  d   v e+f+++ +  ++   ++   + l+++a++  +  l+++ Rr  +      
   EHT99691.1  10 LVERVQKGDQKAFNLLVIRYQHKVASLVSRYV----PSGDVPD--VVQESFIKAYRALDSFRGDSAfyTWLYRIAVNTAKNYLVAQGRRPPSSD---- 97 
                  7899**********999999999999998876....4455544..3778888887744444333331144778888888999999999987763.... PP

  Sigma70_ECF 103 vvraeldeeeds..vdsdspdelleLdealerl....ls.ldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawler 181
                  v   + ++ e    +++ s+ e l+L + l+++     + l+++ +  + lr l+Gls eEiA  +++   tv+ r   aR+ + +
   EHT99691.1  98 VDAIDAENFESAgaLKEISNPENLMLSDELKQIvfrtIEaLPEDLRMAITLRELDGLSYEEIAVIMDCPVGTVRSRIFRAREAIDN 183
                  333332222222224444455556676666664222234388888889**************************999999987665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06    0.0059       4      40 ..     140     177 ..     137     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-06
      HTH_23   4 ereRlrillllaeGlsvreIAreLgvsrrTvy.rwlkr 40 
                 e+ R+ i l  ++Gls++eIA +++++  Tv+ r+ ++
  EHT99691.1 140 EDLRMAITLRELDGLSYEEIAVIMDCPVGTVRsRIFRA 177
                 5667776666677*******************999877 PP

>> HTH_16  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.9e-05      0.18       3      56 ..      10      56 ..       8      65 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
      HTH_16  3 vieaAvnGDeeAieeiLkhYegyIrklSlrklydedgnvngyvdedlkqeleik 56
                ++e+ ++GD++A + ++ +Y++  ++l  r+   ++g        d+ qe  ik
  EHT99691.1 10 LVERVQKGDQKAFNLLVIRYQHKVASLVSRY--VPSGD-----VPDVVQESFIK 56
                68999******************99998874..33333.....33555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1426.76
//
Query:       EHT99692.1  [L=217]
Description: anti-sigma factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-35  121.0   0.4    2.2e-35  121.0   0.4    1.8  2  RseA_N    Anti sigma-E protein RseA, N-terminal domain
    9.7e-24   83.4   0.6    9.7e-24   83.4   0.6    2.4  3  RseA_C    Anti sigma-E protein RseA, C-terminal domain
      0.002   18.5   0.6     0.0035   17.7   0.6    1.5  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> RseA_N  Anti sigma-E protein RseA, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.4   3.7e-39   2.2e-35       1      86 [.       1      86 [.       1      87 [. 0.99
   2 ?   -1.5   0.1      0.61   3.7e+03      19      34 ..     173     188 ..     164     203 .. 0.67

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 3.7e-39
      RseA_N  1 mqkEkLSAlmDGelldkelieelaqdkelqqtWarYhligdvlRgeapevleldiaervaaaLeaEpahlalkaapesqptpeqak 86
                mqkEkLSAlmDGe+ld++li++l++d++lq++W+rYhli+d++Rg++ e+l++di++rvaaa+e+Ep++++++ +pe+qp+p +++
  EHT99692.1  1 MQKEKLSALMDGEALDNALISALSKDADLQKSWERYHLIRDTMRGDVGEHLHFDISARVAAAIENEPQRNVTSLIPEAQPEPYRWE 86
                9*********************************************************************************9997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.61
      RseA_N  19 lieelaqdkelqqtWa 34 
                  ++++ qd elq + +
  EHT99692.1 173 RVNAMLQDYELQRRLH 188
                 4566666666666555 PP

>> RseA_C  Anti sigma-E protein RseA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.96   5.7e+03      10      21 ..     103     114 ..     103     129 .. 0.67
   2 !   83.4   0.6   1.6e-27   9.7e-24       1      55 []     133     187 ..     133     187 .. 0.96
   3 ?   -1.8   1.2      0.64   3.8e+03      20      40 ..     197     217 .]     196     217 .] 0.63

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.96
      RseA_C  10 fvGsaspVSynv 21 
                 +vG a+ VS+ v
  EHT99692.1 103 QVGVAACVSLAV 114
                 567788888865 PP

  == domain 2  score: 83.4 bits;  conditional E-value: 1.6e-27
      RseA_C   1 eqPvlnTlPfvGsaspVSynvpseqeqqaateeqlqeqrrRinayLqdheLQrrL 55 
                 ++Pv+nTlP++G+aspVS++vps+   + +  +q+q qrrR+na+Lqd+eLQrrL
  EHT99692.1 133 DSPVFNTLPVMGKASPVSLGVPSDMFGSGNASQQVQDQRRRVNAMLQDYELQRRL 187
                 68********************9877999999999*******************8 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.64
      RseA_C  20 nvpseqeqqaateeqlqeqrr 40 
                 n+p++ + +++ +++l+ q++
  EHT99692.1 197 NAPKQAQANVPGNQSLGMQQQ 217
                 566666677888888855544 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   5.8e-07    0.0035       7      99 ..      57     172 ..      54     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.8e-07
                 HHHHHTT-X......................................XXXXXXXXXXXXXX...................................... CS
        RskA   7 arilaalaatpqaaaaaaaaaaapppaaapaararr...........laaaaAaalllvlg...................................... 56 
                 ar++aa++++pq+  +   + a+p p ++++ +              + +aa + l++++g                                      
  EHT99692.1  57 ARVAAAIENEPQRNVTSLIPEAQPEPYRWEKMPFWHkvrpwaaqitqVGVAACVSLAVIVGvqhynqptngsvessdspvfntlpvmgkaspvslgvps 155
                 89***********9999988888877777765554489999****987777777777778855666666555555555555555555555555555555 PP

                 ........................XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
        RskA  57 ..............qlavasaaldplrqsaaqaeavvavlaapdaagatatvvdsas 99 
                               q                                        ++
  EHT99692.1 156 dmfgsgnasqqvqdQ----------------------------------------RR 172
                 444444333222222........................................22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1695.93
//
Query:       EHT99693.1  [L=318]
Description: anti-sigma factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-60  203.8   0.0    3.1e-60  202.8   0.0    1.5  2  MucB_RseB    MucB/RseB N-terminal domain
    2.1e-26   92.0   0.0    3.5e-26   91.2   0.0    1.4  1  MucB_RseB_C  MucB/RseB C-terminal domain
    0.00019   21.2   0.0    0.00034   20.4   0.0    1.3  1  LolA_like    Outer membrane lipoprotein-sorting protein
  ------ inclusion threshold ------
       0.13   12.3   0.4        3.8    7.5   0.0    2.8  3  MliC         Membrane-bound lysozyme-inhibitor of c-type lyso
       0.18   11.6   0.5       0.37   10.6   0.5    1.4  1  UVR          UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> MucB_RseB  MucB/RseB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.8   0.0   8.6e-64   3.1e-60       3     176 ..      29     209 ..      27     211 .. 0.97
   2 ?   -2.4   0.0      0.83     3e+03      96     108 ..     287     299 ..     265     312 .. 0.65

  Alignments for each domain:
  == domain 1  score: 202.8 bits;  conditional E-value: 8.6e-64
   MucB_RseB   3 ealLermseAarqlnYegtfvyqrggeleslrivHavddggeyerlesLdGpprevirrndevscfepeskavsvesrkikdslpallpadlealeehY 101
                  alL++m++A+++lnYe+++++ ++  +eslr++Hav d++ y++++++dGp+revi+r++++s+fep+ +++s+ +++i+d+lp++++ad+++l+  Y
  EHT99693.1  29 GALLQQMEQASQTLNYEFAYINVSRLGMESLRYRHAVIDDRVYAQILQMDGPRREVIQRGNDISYFEPGIEPFSLPGNHIVDALPSIIYADFAKLDAAY 127
                 589************************************************************************************************ PP

   MucB_RseB 102 efrllGreRvAgreaqvvrilPkDqlRYgyrlwiDeetgLlLksdlldedgevLEqfaftslelge.......elekaelpp 176
                 +f+ +Gr+R+A++ ++vvr++++D +RY+y +w+D +t+L+L++dlld+dge++Eqf+++s+ +++        leka+lpp
  EHT99693.1 128 DFITVGRSRIADQMCDVVRVVSRDGTRYSYVVWLDVDTKLPLRVDLLDRDGETMEQFRVISFAVDDgvrnlmqGLEKANLPP 209
                 ******************************************************************8888777777777777 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.83
   MucB_RseB  96 aleehYefrllGr 108
                  ++++Ye++++G+
  EHT99693.1 287 VIRDNYEITVVGE 299
                 4555666666554 PP

>> MucB_RseB_C  MucB/RseB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   9.9e-30   3.5e-26       3      96 ..     219     312 ..     217     313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 9.9e-30
                  XXXSEEES---TT-EEEEEEEEE-SSSS-EEEEEEEESSS-EEEEEEEE--TT-.-EEEEETTEEEEEEEETTEEEEEEESS-HHHHHHHHHTE CS
  MucB_RseB_C   3 easgWqlkwlpaGFkkvsesrrklaaseeeveqllysDGLasvsvfvepaseeseegllrqgattivsrrvgdvevtvvGevPlatakriaesi 96 
                  ++ +W++ wlpaG+++vs+srr l+a ++++e++lysDGL+s+ v+v pa+++s  ++lr+g++t+ +  ++++e+tvvGe+P+atakria+s+
   EHT99693.1 219 ATLDWEPAWLPAGMTLVSQSRRMLPALNKSLESRLYSDGLFSFAVNVTPADKNSVAQTLRTGRRTVETVIRDNYEITVVGELPPATAKRIADSV 312
                  5679****************************************************************************************98 PP

>> LolA_like  Outer membrane lipoprotein-sorting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   9.6e-08   0.00034      59     135 ..     117     189 ..     114     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 9.6e-08
                 HHHHC--SCCCEEEEEEEEEEETTEEEEEEEEEESS.TTSSECEEEEEEETTT--EEEEEEEETTS-EEEEEEEEEE CS
   LolA_like  59 yeDlssrevedythellgeeevggkdcyvleltpkdaadvsYskivlwvdketylplkvefydksgkllKtltvsdi 135
                 y+D+++   + y++  +g   +  + c v++ + +d   + Ys+ v+w+d +t lpl+v++ d++g+ + +++v ++
  EHT99693.1 117 YADFAK-LDAAYDFITVGRSRIADQMCDVVRVVSRD--GTRYSY-VVWLDVDTKLPLRVDLLDRDGETMEQFRVISF 189
                 788864.7788999999******************9..688875.78*********************999988665 PP

>> MliC  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.076   2.7e+02      33      43 ..      22      32 ..      18      50 .. 0.73
   2 ?    7.5   0.0    0.0011       3.8      24      50 ..     136     160 ..     119     167 .. 0.79
   3 ?   -2.5   0.0       1.4     5e+03      51      60 ..     214     223 ..     211     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.076
                EEEETSSSEEE CS
        MliC 33 aqavSaSGarY 43
                + +vSaSGa+ 
  EHT99693.1 22 PAQVSASGALL 32
                5799****986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0011
                 ECCTEEEEEEEEETSSSEEEEETEEEE CS
        MliC  24 rlggktltLaqavSaSGarYsanyewW 50 
                 r+ ++      +vS +G+rY + y+ W
  EHT99693.1 136 RIADQMCDVVRVVSRDGTRY-S-YVVW 160
                 67788888899*********.4.7777 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.4
                 EETTEEEEEE CS
        MliC  51 tkGdeAtLtw 60 
                 tk d+AtL w
  EHT99693.1 214 TKSDNATLDW 223
                 8999999988 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5    0.0001      0.37       8      23 ..      32      47 ..      30      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
         UVR  8 eeemeeAaenedFEkA 23
                 ++me+A++ +++E A
  EHT99693.1 32 LQQMEQASQTLNYEFA 47
                589***********88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2289.02
//
Query:       EHT99694.1  [L=154]
Description: RseC protein involved in reduction of the SoxR iron-sulfur cluster [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-35  120.5   0.0    4.9e-35  120.3   0.0    1.0  1  RseC_MucC  Positive regulator of sigma(E), RseC/MucC
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.19   11.5   0.0    1.3  1  PCuAC      Copper chaperone PCu(A)C


Domain annotation for each model (and alignments):
>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   5.5e-39   4.9e-35       1     129 [.       8     139 ..       8     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 5.5e-39
   RseC_MucC   1 VvaveggtaeVeierksaCgsCaakssC......klsaleskekrleveneigakvGdkVevgieeksllkaallvYllPllllilgallgsallgsse 93 
                 Vva+++g+a++++e k++C+sC+a+++C      kl    ++++ +++++++++++G++Ve+gi+e+sll +allvY++Pl++l+l+a l++al ++s+
  EHT99694.1   8 VVAWQDGIATLHTEAKTSCNSCQARKGCgshmlnKL--GPKNAHVMQIASSKPLAPGQRVELGIKESSLLGSALLVYMTPLFGLFLFAGLFQAL-FGSD 103
                 89****************************866544..99999***************************************************.8*** PP

   RseC_MucC  94 llaalgallglvlgflivrllskrlkkkskfqpvil 129
                 l+aa+gallg v gf++++ +s +++++++fqpvil
  EHT99694.1 104 LAAACGALLGGVGGFIVAKGISMKFGDSEAFQPVIL 139
                 ***********************************8 PP

>> PCuAC  Copper chaperone PCu(A)C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.2e-05      0.19      72      98 ..      42      68 ..      37      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
                EE-TTSCEEEEECESS-B-TTEEEEEE CS
       PCuAC 72 eLkpggfhvMliglkrdlkaGdevtlt 98
                +L p++ hvM i   ++l++G++v+l 
  EHT99694.1 42 KLGPKNAHVMQIASSKPLAPGQRVELG 68
                699*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1210.69
//
Query:       EHT99695.1  [L=599]
Description: GTP-binding membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-52  175.9   0.0    1.2e-51  175.1   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.1e-49  167.0   1.7    1.8e-49  166.4   1.7    1.3  1  LepA_C       GTP-binding protein LepA C-terminus
    3.6e-20   71.8   0.0    7.7e-20   70.7   0.0    1.6  1  EFG_C        Elongation factor G C-terminus
    4.6e-11   43.0   0.3    1.1e-10   41.8   0.3    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.6e-05   24.3   0.0    8.3e-05   22.7   0.0    1.9  2  MMR_HSR1     50S ribosome-binding GTPase
    7.6e-05   22.4   0.0    0.00013   21.6   0.0    1.3  1  Ras          Ras family
    0.00033   20.7   0.0     0.0011   19.0   0.0    1.9  1  EFG_II       Elongation Factor G, domain II
  ------ inclusion threshold ------
      0.033   13.6   0.0      0.076   12.4   0.0    1.6  1  SRPRB        Signal recognition particle receptor beta subuni
      0.056   13.3   0.0       0.12   12.2   0.0    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.0   5.9e-55   1.2e-51       1     193 [.       2     181 ..       2     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 5.9e-55
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...ketkkylinliDtPGHvdFskevirglrvlDg 96 
                 k irn++ii+h+DhGK+TL+drL++ +g  +++++ a+   vlD+++ ErergiTik++ ++l+   +++++y++n+iDtPGHvdFs ev+r+l++++g
  EHT99695.1   2 KHIRNFSIIAHIDHGKSTLSDRLIQICGGLTDREMAAQ---VLDSMDLERERGITIKAQSVTLDykaQDGETYQLNFIDTPGHVDFSYEVSRSLAACEG 97 
                 579***************************99887665...9**********************9766******************************* PP

                 EEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU  97 avlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 a+lvvda +Gve+qt  + + a++++++++ ++NK+D + a+ ++ ++e+++ +          g +    +  v++Sa++g gv ++le lv+ +p
  EHT99695.1  98 ALLVVDAGQGVEAQTLANCYTAIEMDLEVVPVLNKIDLPAADPERAAQEIEDIV----------GID---ATDAVRCSAKTGVGVPEVLERLVRDIP 181
                 ***************************************************777..........444...4689*****************999887 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   1.7   8.9e-53   1.8e-49       1     106 [.     487     592 ..     487     593 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 8.9e-53
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveipq 99 
                 in+e+vdaL+li+hr++a  rgr+lvek+k+liprq+f++aiqaaig+++iar+t+k+lrk+vlak+yggd++rkkKll+kqkegkkr+k++gnve+pq
  EHT99695.1 487 INSERVDALALITHRDNAPYRGRELVEKMKDLIPRQQFDIAIQAAIGNHIIARSTVKQLRKNVLAKCYGGDVSRKKKLLQKQKEGKKRMKQVGNVELPQ 585
                 89************************************************************************************************* PP

                 XXXXXXX CS
      LepA_C 100 eaflavl 106
                 eafla+l
  EHT99695.1 586 EAFLAIL 592
                 *****99 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   3.8e-23   7.7e-20       2      85 ..     399     482 ..     398     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 3.8e-23
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYeevpgdk 85 
                 l EPi ++++  p+ey+g+vi+++ ++rG +++m ++ +++v +++eiP+ae++ +f+++L+s ++G++s+++ f++++ ++ + 
  EHT99695.1 399 LREPIAECHMLLPQEYLGNVITLCIEKRGVQTNMVYH-GNQVALTYEIPMAEVVlDFFDRLKSTSRGYASLDYNFKRFQASDMVR 482
                 78***********************************.*****************************************987665 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.3   5.3e-14   1.1e-10       1      74 []     205     275 ..     205     275 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 5.3e-14
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE.EESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe.dedeavaganaGvivaikgledaiivGdtlt 74 
                  G+v+l+rv +Gt++kGd++++  ++t++     +  +++t+++ d +e+ +g+++++ +aik++  a  vGdtlt
   EHT99695.1 205 GVVSLVRVKNGTMRKGDKIKV--LSTGQV-YNADRLGIFTPKQvDRTELNCGEVGWLVCAIKDILGA-PVGDTLT 275
                  89*******************..888555.8899999999999899999*****************8.*****96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.1e-08   8.3e-05       8     114 .]      13     132 ..       6     132 .. 0.59
   2 ?   -3.0   0.0       3.9   7.8e+03      32      55 ..     365     388 ..     362     416 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.1e-08
                 TTSSHHHHHHHHHT...............STEEESSSTTSSSSEEEEEEE.....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1   8 pNvGKStLinaltg...............ekaivsdkpgtTrdinegrvk.....lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas 86 
                    GKStL  +l++               +    +++ g T++ +  +++      +  +++++DtpG ++    + +++++++    ++ +llvvda 
  EHT99695.1  13 IDHGKSTLSDRLIQicggltdremaaqvlDSMDLERERGITIKAQSVTLDykaqdGETYQLNFIDTPGHVD---FSYEVSRSLA---ACEGALLVVDAG 105
                 567*********966666777666665552334444555555555555553322111578********655...2224444444...489*******88 PP

                 TTCSHHHHHHHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  87 eeklkpldeeleellee..akkplilvlnk 114
                 ++ +  + ++l+++ +    + +++ vlnk
  EHT99695.1 106 QG-V--EAQTLANCYTAieMDLEVVPVLNK 132
                 44.5..334555554332244445666665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.9
                 SSSSEEEEEEEETTEEEEEEECGG CS
    MMR_HSR1  32 tTrdinegrvklkgkeielvDtpG 55 
                 tT  ++ ++v++   e++ vD p 
  EHT99695.1 365 TTAPTVVYEVETTSGEVIYVDSPS 388
                 566667777776667889999886 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.4e-08   0.00013      30     160 ..      52     180 ..      42     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.4e-08
                 TTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-S.S-HHH CS
         Ras  30 sTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekra.vstee 126
                  Ti +++ t + +++ g++++l+  DT G  +f+   + ++  +eg+llv d  +    +++++ ++ i++  e    +v v nK+Dl        ++e
  EHT99695.1  52 ITIKAQSVTLDYKAQdGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAIEMDLE----VVPVLNKIDLPAADPeRAAQE 146
                 567666666666554599*************************************9999999999999988766....67788*****98443033445 PP

                 HHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 127 geelakelglkfletSAktnenveeafeellrei 160
                  e++     +  + +SAkt  +v e++e+l+r+i
  EHT99695.1 147 IEDIVGIDATDAVRCSAKTGVGVPEVLERLVRDI 180
                 55555555588999*****************987 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.7e-07    0.0011       4      73 ..     293     365 ..     291     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.7e-07
      EFG_II   4 PvislaiepkskadedklskaLarlleEDptlrverdeeTk...etilsGmGelHleivverlkreykvevel 73 
                 P + + + p s++d + + +aL +l+  D +l +e ++ T     +    +G lH+ei+ erl+rey++++ +
  EHT99695.1 293 PQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPESSTAlgfGFRCGFLGLLHMEIIQERLEREYDLDLIT 365
                 6666677789999*******************9998888863223444558******************9876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.8e-05     0.076      33      85 ..      53     104 ..       5     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.8e-05
                 --SS-EEETTG...GGT..T-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEET CS
       SRPRB  33 tSqessaalkvksekgs..kltliDfPGheklrqklleklkaksslkglvfvvDS 85 
                 t  ++s++l++k+++g+  +l++iD PGh+ + ++++ +    +   g + vvD+
  EHT99695.1  53 TIKAQSVTLDYKAQDGEtyQLNFIDTPGHVDFSYEVSRS---LAACEGALLVVDA 104
                 44478899999887776115667************9998...5556677777775 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.9e-05      0.12      24      79 ..     308     366 ..     285     381 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHHHHCTSSEEEEET.TS...S-EEEEESSTHHHHHHHHHHHHHH---EEEE CS
       RF3_C  24 kqlrkgleqLaeEGavqvfkeeeag...eelilgaVGqLQfeVveeRlknEYgvevrle 79 
                   +r +l +L+   a   +++e+++     +  g +G L +e+++eRl++EY++++ ++
  EHT99695.1 308 EAFRDALGKLSLNDASLFYEPESSTalgFGFRCGFLGLLHMEIIQERLEREYDLDLITT 366
                 556666666666666555555544322123567899*****************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4672.84
//
Query:       EHT99696.1  [L=324]
Description: leader peptidase (signal peptidase I) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-22   77.6   0.0    8.4e-22   76.9   0.0    1.4  1  Peptidase_S24  Peptidase S24-like
    1.2e-09   38.0   0.0      3e-07   30.3   0.0    2.3  2  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   9.4e-26   8.4e-22       1      69 [.      86     169 ..      86     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 9.4e-26
                    EXXSSTTCCTXXTTXEEEEECTS................---TTSEEEEEETTCE.-EEEEEEEEETTEEEEE.SSTTSTEEEECT CS
  Peptidase_S24   1 rvpGdSMeptlldGdlilVdkfs................epkrGdivvfrlpgee.eayiKrviglpgdrvllasnneypplying 69 
                    ++p++SM+ptll+Gd+ilV+kf+                 pkrGdi vf++p+++  +yiKrviglpgdrv    +++ ++l+in+
     EHT99696.1  86 QIPSGSMMPTLLIGDFILVEKFAygikdpitqttliptgHPKRGDIAVFKYPKDPsLDYIKRVIGLPGDRVT--YDPYSKTLTINP 169
                    69**********************************************************************..334588888885 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0015        14      52      67 ..     144     159 ..     114     180 .. 0.83
   2 !   30.3   0.0   3.3e-11     3e-07      95     138 .]     259     302 ..     239     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0015
  Peptidase_S26  52 llKrVlalagqevcva 67 
                     +KrV++l+g++v+  
     EHT99696.1 144 YIKRVIGLPGDRVTYD 159
                    59***********875 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3.3e-11
  Peptidase_S26  95 qgcrvlaegelfllskevadSfDsRYfGpvpassvigvarpvlt 138
                    q++ v+++g++f+++++ ++S DsRY+G vp+ +++g+a+++++
     EHT99696.1 259 QASWVVPQGQYFMMGDNRDNSADSRYWGFVPERNLVGKAVAIWM 302
                    56779***********************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2434.36
//
Query:       EHT99697.1  [L=226]
Description: RNase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  115.8   0.0    1.9e-33  115.4   0.0    1.2  1  Ribonucleas_3_3  Ribonuclease-III-like
      5e-20   72.1   0.0    9.8e-20   71.1   0.0    1.5  1  Ribonuclease_3   Ribonuclease III domain
    2.3e-14   53.8   0.0    3.7e-14   53.2   0.0    1.3  1  dsrm             Double-stranded RNA binding motif
    1.7e-05   25.0   0.1    3.4e-05   24.0   0.1    1.5  1  DND1_DSRM        double strand RNA binding domain from DEAD E


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   4.1e-37   1.9e-33       2     125 ..      20     141 ..      19     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 4.1e-37
  Ribonucleas_3_3   2 eelleqaltHkSfangrkghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrlrkgeeetegsgrek 94 
                      +ell+qaltH+S    +++hNerLefLGd++L+ +++++l++++ + deg+++++ra lv+ ++lae+A+e++Lg++lrl+ ge +++g +re+
       EHT99697.1  20 SELLQQALTHRSA---SSKHNERLEFLGDSILSYVIANALYHRFPRvDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 110
                      58**********5...589***********************98877*********************************************** PP

  Ribonucleas_3_3  95 vladaleAliGAiyldkgaevaqefveekil 125
                      +lad++eAliG ++ld+++++++++++ ++ 
       EHT99697.1 111 ILADTVEALIGGVFLDSNIQTVEKLILDWYQ 141
                      **************************98875 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   2.2e-23   9.8e-20       1     104 [.      38     127 ..      38     128 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 2.2e-23
                     HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHC..TSHHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekeddd..adkvladvv 93 
                     erLeflGD++l ++i ++l++++p  +eg++s++r+ lv+ ++la++a++++l + lr                l+ +e ++ +  ++++lad+v
      EHT99697.1  38 ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLR----------------LGPGELKSGGfrRESILADTV 116
                     8*********************************************************................999999988788999****** PP

                     HHHHHHHHHHC CS
  Ribonuclease_3  94 EAliGaiylds 104
                     EAliG ++lds
      EHT99697.1 117 EALIGGVFLDS 127
                     *********97 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   8.3e-18   3.7e-14       1      67 []     156     223 ..     156     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 8.3e-18
                 HHHHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEE.TTEEEEEEEESSHHHHHHHHHHHHHHHH CS
        dsrm   1 pKskLqeycqkkg.kppnyeyvseegpphslpkFvvtvkv.ngklygsGvgsnKKeAeqsAAedalekL 67 
                 pK++Lqey+q ++ + p y +v + g +h  ++F++++ v ++ ++  Gvgs++++Aeq+AAe+al kL
  EHT99697.1 156 PKTRLQEYLQGRHlPLPSYLVVQVRGEAHD-QEFTIHCQVsGMAEPVVGVGSSRRKAEQAAAEQALIKL 223
                 8************55555666666666665.*********56699********************9876 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   7.6e-09   3.4e-05       2      80 .]     155     224 ..     154     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.6e-09
   DND1_DSRM   2 savqlLeelCeknkwgsPvYelhseagpdgkllflYkVvipgietslkgvvvifmpdklastkeeAkelaAeqvLeaLe 80 
                 +++  L+e+ + + ++ P Y +   +g ++ + f+  + ++g++ ++       +   + s+  +A+++aAeq+L +L+
  EHT99697.1 155 DPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVV------G---VGSSRRKAEQAAAEQALIKLG 224
                 677889****************************************44......3...56788899999******9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1946.73
//
Query:       EHT99698.1  [L=301]
Description: membrane-associated, 16S rRNA-binding GTPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-23   83.5   0.0    2.5e-23   82.3   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
    9.3e-21   73.5   1.1    4.3e-20   71.3   1.0    2.1  2  KH_2          KH domain
      2e-14   53.4   0.1    3.2e-14   52.8   0.1    1.2  1  FeoB_N        Ferrous iron transport protein B
    1.3e-08   34.9   0.2    0.00026   21.0   0.0    2.3  2  RsgA_GTPase   RsgA GTPase
    1.4e-08   34.5   0.2    1.9e-06   27.6   0.2    2.6  1  GTP_EFTU      Elongation factor Tu GTP binding domain
      6e-07   29.7   0.1    0.00015   21.9   0.1    2.4  2  Dynamin_N     Dynamin family
    3.5e-06   26.5   0.0    6.2e-06   25.7   0.0    1.3  1  AIG1          AIG1 family
    2.4e-05   24.0   0.0     0.0019   17.8   0.0    3.0  2  Ras           Ras family
      9e-05   22.8   0.0    0.00018   21.8   0.0    1.5  1  AAA_22        AAA domain
    0.00033   20.4   0.1     0.0048   16.6   0.1    2.3  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
     0.0023   17.4   0.1      0.007   15.8   0.1    1.8  1  SRPRB         Signal recognition particle receptor beta subun
     0.0047   17.1   0.4      0.034   14.3   0.1    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.016   15.3   0.1      0.037   14.0   0.1    1.6  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
       0.02   14.1   0.0       0.11   11.6   0.0    1.9  2  NB-ARC        NB-ARC domain
      0.037   14.5   0.0       0.08   13.5   0.0    1.7  1  ABC_tran      ABC transporter
      0.063   12.9   0.2        9.8    5.7   0.0    2.3  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.065   13.6   0.2       0.31   11.4   0.1    2.3  2  AAA_16        AAA ATPase domain
       0.13   12.3   0.1       0.31   11.1   0.0    1.7  2  AAA_14        AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   2.5e-26   2.5e-23       2     114 .]      11     125 ..      10     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 2.5e-26
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH....HHHHHHHHHHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek....glgkaflaleeadlillvvdaseeklkplde 95 
                 vaivGrpNvGKStL+n+l+++ ++i+s+kp+tTr+ + g  +++  + + vDtpG +++++++     + + a  ++ +++li++vv+   + ++p+de
  EHT99698.1  11 VAIVGRPNVGKSTLLNQLLRQkVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPG-LHMEEKRAinrlMNRAASSSIGDVELIIFVVE-G-TRWTPDDE 106
                 8*******************9668***************7776669*********.65222222343355555566778********9.5.46****** PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                  + + l++ k p++l++nk
  EHT99698.1 107 MVLNKLRDGKVPVLLAINK 125
                 *******9*********98 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.6   1.6e+03      44      58 ..     159     173 ..     157     177 .. 0.88
   2 !   71.3   1.0   4.3e-23   4.3e-20       1      77 [.     209     285 ..     209     286 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.6
                 GHHHHHHHHHHHHHH CS
        KH_2  44 Gsnikkigkelrkdi 58 
                 G+n+++i + +rk +
  EHT99698.1 159 GKNVDTIAAIARKHL 173
                 99*********9976 PP

  == domain 2  score: 71.3 bits;  conditional E-value: 4.3e-23
                 HHHHHHHHHT.ECET..EEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEE.EETTTG CS
        KH_2   1 eipeslavei.kkag..vskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklniv.kVkkpe 77 
                 e+p+s++vei ++     ++++I    n++i+v+re+q+++vIG +G++ik+ig e+rkd+e++++ kV+l+++ kVk+ +
  EHT99698.1 209 ELPYSVTVEIeQFVSnaRGGYDI----NGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMEEMFDAKVHLELWvKVKSGW 285
                 79********88888889*****....****************************************************99 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   3.2e-17   3.2e-14       3     153 ..      11     166 ..      10     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 3.2e-17
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSS.EEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGHHHHHHH.H CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtv.ekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnlernLyL.t 98 
                 va+vG pnvGk+tl+n+l  +k ++      t   +  g  +   +++  vD PG +  ++ +++  + r       ++++++ vv+ t+   +  + +
  EHT99698.1  11 VAIVGRPNVGKSTLLNQLLRQKVSITSRKPQTTrHRIMGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNRAASSsIGDVELIIFVVEGTRWTPDDEMvL 109
                 89********************9998776555505555555555599999*******9999999999988876624799**********9876544404 PP

                 HHHHHTTSSEEEEEETHHHHHHTTEEE.-HHHHHHHHT.S-EEEEBTTTTBTHHHHH CS
      FeoB_N  99 lqllelgvpvvlalnmideaekkgiei.dlkkLsekLg.vpvvktsakkkegieell 153
                  +l + +vpv+la+n+id++++k + + +l+ Lse+++ +++v++sa+++++++++ 
  EHT99698.1 110 NKLRDGKVPVLLAINKIDNIQDKSVLLpHLQFLSEQMNfIDIVPVSAESGKNVDTIA 166
                 58999*****************99988356889****9789************9886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.6e-07   0.00026     100     162 ..       9      67 ..       2      71 .. 0.73
   2 !   11.9   0.0   0.00016      0.16      37      98 ..     107     170 ..      74     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.6e-07
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT...TEEEESS-SSS CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae...gglliDtPGfr 162
                   ++++vG   vGKStL+n+ll +   k++ +s+k      TT+++ +    e   +++ +DtPG++
   EHT99698.1   9 GFVAIVGRPNVGKSTLLNQLLRQ---KVSITSRK----PQTTRHRIMGIHTEgayQAIYVDTPGLH 67 
                  56899***************988...55555555....4578887775555423356689****86 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00016
                  HHHHHHHHTT-EEEEEEE-GGG--HHH....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  37 rfLvlaeekgiepvivlnKiDlleeee....eleelkeelealgyevllvsaktkegleelkellk 98 
                   +L  + + ++++++++nKiD +++++    +l+ l+e+++   ++++ vsa+++++++++++  +
   EHT99698.1 107 MVLNKLRDGKVPVLLAINKIDNIQDKSvllpHLQFLSEQMNF--IDIVPVSAESGKNVDTIAAIAR 170
                  5677888999*****************865444444444444..5899999999999999988765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.2   1.9e-09   1.9e-06       6     193 ..      11     174 ..       9     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.9e-09
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 ++i+g  + GK+TL+ +Ll ++  i++++ +++ +r++  + e   + i +++   ++e   +k+ in +        ++  + ++  +++ ++vv+ +
  EHT99698.1  11 VAIVGRPNVGKSTLLNQLLRQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLHME---EKRAINRL-------MNRAASSSIGDVELIIFVVEGT 99 
                 6899*****************99999988877777888888888888888888888888...66666653.......2333344444455555555444 PP

                 TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 105 eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                    +p  e vl+ +++ +vp+ ++iNK+D+++++   +++ ++  +           e+  +++ +v++Sa +g++v+t+     ++lp
  EHT99698.1 100 -RWTPDDEMVLNKLRDGKVPVLLAINKIDNIQDKSVLLPH-LQ--F---------LSEQM-NFIDIVPVSAESGKNVDTIAAIARKHLP 174
                 .38999*************************766544443.22..2.........24444.4899************999999888887 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.5e-07   0.00015       1      35 [.      11      45 ..      11      59 .. 0.90
   2 ?    5.8   0.0     0.013        13     106     151 ..      61     110 ..      47     127 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrp 35
                +a+vG  + GKS++ln+Ll++++  ++  p T r 
  EHT99698.1 11 VAIVGRPNVGKSTLLNQLLRQKVSITSRKPQTTRH 45
                79***************************999774 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
                 EE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHH CS
   Dynamin_N 106 vDlPGldsvnkrdq.....elvkeyikkadiilavtsanhdlsnsealfla 151
                 vD+PGl+  +kr       + + + i +  +i++v++    ++  +   l+
  EHT99698.1  61 VDTPGLHMEEKRAInrlmnRAASSSIGDVELIIFVVEGTR-WTPDDEMVLN 110
                 9*******99998888888888888888888888887654.5555555555 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.2e-09   6.2e-06       5     108 ..      13     113 ..      10     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.2e-09
                 EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC.CCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SHHHHH CS
        AIG1   5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl.fdlsvsadkiskeivrclllseegihalllvlslgrfteedek 102
                 +vG+  +GkS+  N +l++k+  ++ ++ + t++  +   t+   +   +DTPgl ++ +    +i++ + r  + s   ++ +++v++ +r t +de+
  EHT99698.1  13 IVGRPNVGKSTLLNQLLRQKVSITS-RKPQTTRHRIMGIHTEGAYQAIYVDTPGLhMEEKR---AINRLMNRAASSSIGDVELIIFVVEGTRWTPDDEM 107
                 8********************7777.455666666666666666677778*****333333...344555566678888899***************** PP

                 HHHHHH CS
        AIG1 103 alktlk 108
                 +l++l+
  EHT99698.1 108 VLNKLR 113
                 ***997 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.9e-06    0.0019       2     153 ..      11     166 ..      10     174 .. 0.74
   2 ?    1.6   0.0      0.19   1.9e+02      28      53 ..     253     278 ..     249     280 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETT..SGGGHHHHHHHHTTE.....SEEEEEEETTBHHHHHTHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAG..qeefkslrelyyrda.....egillvyditsresfenvkkw 93 
                 + +vG  +vGK++ll++  ++k + ++ +       +  i+++g    +   DT G   ee +++++l+ r a     ++ l+++ ++ ++   + +  
  EHT99698.1  11 VAIVGRPNVGKSTLLNQLLRQKVSITSRKPQTTRHRIMGIHTEGAYQAI-YVDTPGlhMEEKRAINRLMNRAAsssigDVELIIFVVEGTRWTPDDEMV 108
                 579*****************99987766666456666666666654444.46****5558888888888777611111455677777665544444444 PP

                 HHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHH CS
         Ras  94 veeikrvaeenvpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenveeaf 153
                 ++++++    +vp++L  nK+D  +++ v   + + l+++++ +  + +SA++ +nv+++ 
  EHT99698.1 109 LNKLRD---GKVPVLLAINKIDNIQDKSVLLPHLQFLSEQMNfIDIVPVSAESGKNVDTIA 166
                 444443...4689*****************************99*************9764 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.19
                 CTTTSSEEEEEEEEEETTEEEEEEEE CS
         Ras  28 yesTigvdfytkeievdgkevkleiw 53 
                 +++Tig++  +   e+ + +v+le+w
  EHT99698.1 253 KIKTIGIEARKDMEEMFDAKVHLELW 278
                 579**********************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.8e-07   0.00018       5     118 ..       8     148 ..       4     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.8e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsst..sskdllrellralglelka........erlsseelle 80 
                  g+++++G + +GK+tll++ll+q++   + +                 + ++v+ p++   + + + r + ra  ++  +        e+ +     e
  EHT99698.1   8 SGFVAIVGRPNVGKSTLLNQLLRQKVSITSRKPqttrhrimgihteGAYQAIYVDTPGLHmeEKRAINRLMNRAASSSIGDveliifvvEGTRWTPDDE 106
                 689*********************975544444999999988866444444499999999877777777777777776666*******9999999999* PP

      AAA_22  81 aleqalraravielliiDEaqhlr..s..eealeeLrsllnl 118
                 ++ + lr+ +v++ll i  ++++   s    +l++L++ +n+
  EHT99698.1 107 MVLNKLRDGKVPVLLAINKIDNIQdkSvlLPHLQFLSEQMNF 148
                 ***********9999999999996543899999999988886 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.9e-06    0.0048       4     138 ..      11     166 ..       9     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.9e-06
   PduV-EutP   4 illiGkvgsGKttLtqalkg..eelkYkktqaief..........sdev.iDtPGeylenrklysalivtsaeadv..ialvqdateeesvfppgfasv 87 
                 + ++G+ ++GK tL ++l     +++ +k q++ +          ++++ +DtPG ++e+++  + l+  +a++++  + l+  ++e +   p     v
  EHT99698.1  11 VAIVGRPNVGKSTLLNQLLRqkVSITSRKPQTTRHrimgihtegaYQAIyVDTPGLHMEEKRAINRLMNRAASSSIgdVELIIFVVEGTRWTP-DDEMV 108
                 56899******9987776551245777888987642222222222344469****************99998887644555555555444433.33444 PP

   PduV-EutP  88 fnk......eviGiitkidlaedeenieaveelLk.saGaekifevsavekegieell 138
                 +nk      +v+  i kid  +d++ +    ++L+ ++    i  vsa + ++++++ 
  EHT99698.1 109 LNKlrdgkvPVLLAINKIDNIQDKSVLLPHLQFLSeQMNFIDIVPVSAESGKNVDTIA 166
                 4443344447888888999888887777666666426777788888888888887775 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     7e-06     0.007       6      86 ..      11      99 ..       6     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7e-06
                EEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG.......GGTT-SEEEETT....-GCCSHHHHHHHHHHGG..EEEEEEEEETT CS
       SRPRB  6 vllvGlsdsGKTslftrLttdsvkktvtSqessaalkv....ksekgskltliDfPG....heklrqklleklkakss..lkglvfvvDSt 86
                v +vG  + GK +l+++L+ ++v    tS +++++ +     ++e   +   +D PG    +++  ++l+++   +s   +  ++fvv+ t
  EHT99698.1 11 VAIVGRPNVGKSTLLNQLLRQKVS--ITSRKPQTTRHRimgiHTEGAYQAIYVDTPGlhmeEKRAINRLMNRAASSSIgdVELIIFVVEGT 99
                789****************99765..55666666554335545666677788*****5332233445677775555545688999999876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   3.4e-05     0.034       2      29 ..      11      38 ..      11     128 .. 0.81
   2 ?   -2.2   0.0       4.5   4.5e+03      28      61 ..     253     278 ..     243     278 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-05
                EEEESSTTSSHHHHHHCHCT-CCC-EEE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekek 29
                v +vG  +vGK++ll++++++k+s +++
  EHT99698.1 11 VAIVGRPNVGKSTLLNQLLRQKVSITSR 38
                679*****************99975443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.5
                 EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEE CS
         Roc  28 ekstigvdfltkevtkikgvendkkvkkvklniW 61 
                 + +tig++   k+++++          kv+l++W
  EHT99698.1 253 KIKTIGIEAR-KDMEEMFD-------AKVHLELW 278
                 4567777764.34433222.......24666666 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.7e-05     0.037      56      97 ..     117     166 ..     106     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
  MMR_HSR1_Xtn  56 ipclyvlNKiDlisleel.....delare...pnsvviSaekelnldeLk 97 
                   +p+l+++NKiD i+++++     + l+++    ++v++Sae+++n+d++ 
    EHT99698.1 117 VPVLLAINKIDNIQDKSVllphlQFLSEQmnfIDIVPVSAESGKNVDTIA 166
                   699*********88876511111445554555599************986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.11      21      47 ..       9      35 ..       1      43 [. 0.84
   2 ?   -0.2   0.0      0.47   4.7e+02      22      70 ..     151     199 ..     138     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                EEEEEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnksdev 47
                 +va+vG++ vGK+tl++q l++  ++
  EHT99698.1  9 GFVAIVGRPNVGKSTLLNQLLRQKVSI 35
                49******************9986655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.47
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeile 70 
                 +v ++   G    t+a+ + +++ e +++F+       s+ ++ +ei++
  EHT99698.1 151 IVPVSAESGKNVDTIAAIARKHLPESDHHFPEDYITDRSQRFMASEIIR 199
                 666665655555789999999999******9888787888888777765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     8e-05      0.08       7      35 ..       4      32 ..       1      90 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8e-05
                EEETTSEEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  7 klkegekvaivGenGaGKStLlkllagll 35
                ++  +  vaivG+   GKStLl+ l+++ 
  EHT99698.1  4 NVTYSGFVAIVGRPNVGKSTLLNQLLRQK 32
                56677789***************998874 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0098       9.8       4      24 ..      12      32 ..      10      39 .. 0.85
   2 ?    5.0   0.0     0.017        17     103     159 ..      80     136 ..      41     150 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
                EEEESTTCCHHHHHHHHHCT- CS
        cobW  4 vltGflGsGKTtLlnhllenr 24
                 ++G +  GK+tLln+ll+++
  EHT99698.1 12 AIVGRPNVGKSTLLNQLLRQK 32
                68899999**********775 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.017
                 SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...H CS
        cobW 103 eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.all 159
                     +s   ++ +++vv++++++ ++e   +k++d+ ++  ll +nK+D ++++  ll
  EHT99698.1  80 RAASSSIGDVELIIFVVEGTRWTPDDEMVLNKLRDG-KVPVLLAINKIDNIQDKsVLL 136
                 4444456678999******99988888888888877.6778999*******9984444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00031      0.31      25      47 ..       9      31 ..       3     148 .. 0.83
   2 ?   -1.9   0.0       3.7   3.7e+03      47      88 ..     172     209 ..     164     226 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00031
      AAA_16 25 elvllsGesGvGKsslvrellra 47
                + v ++G + vGKs+l+++llr+
  EHT99698.1  9 GFVAIVGRPNVGKSTLLNQLLRQ 31
                5799****************982 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.7
      AAA_16  47 alekdggif....lrgkcdqlesaipysalaqalareellrqllde 88 
                 +l +++ +f    ++ + +++       +  +++ re+l+r l++e
  EHT99698.1 172 HLPESDHHFpedyITDRSQRF-------MASEII-REKLMRFLGAE 209
                 555555555333344444455.......566666.77888888777 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00031      0.31       4      28 ..      10      35 ..       8      81 .. 0.85
   2 ?   -3.2   0.0       8.3   8.2e+03      70      94 ..     126     150 ..     123     166 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
      AAA_14  4 ilvitGaRrvGKTtllkqlikell.v 28
                 ++i+G   vGK+tll+ql++++  +
  EHT99698.1 10 FVAIVGRPNVGKSTLLNQLLRQKVsI 35
                57899999************998852 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.3
      AAA_14  70 lDEiqevpewekalkslvdegknld 94 
                 +D iq  + +  +l+ l ++ + +d
  EHT99698.1 126 IDNIQDKSVLLPHLQFLSEQMNFID 150
                 5666665555555555555443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2304.89
//
Query:       EHT99699.1  [L=243]
Description: gap repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-23   82.0   1.0    1.2e-22   80.4   1.0    1.7  1  RecO_C    Recombination protein O C terminal
    3.6e-22   78.1   0.0    7.1e-22   77.2   0.0    1.5  1  RecO_N    Recombination protein O N terminal


Domain annotation for each model (and alignments):
>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   1.0   1.3e-26   1.2e-22       4     156 ..      83     225 ..      80     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 1.3e-26
                 HHHHHHHHHHHHHHHHHS-SSS--HHHHHHHHHHHHHHHHSS.-HHHHHHHHHHHHHHHTTS----SB-TTT--BS--EE-TTT.....SSEE-TTT-S CS
      RecO_C   4 lerlaaasylaElldrllpeeepnpeLFdlllatLdaLdeas.daalallvfelrlLallGyapdldsCaacgekialaafspswggllcsecaakapa 101
                 + +l++++y++Ell+r+l+ + p  +LF  +l++++ L++a+ ++++al++fel lL +lGy+ d+ +Ca +ge++++ + +++++  +    a+   +
  EHT99699.1  83 GITLYCGLYVNELLSRVLEQHIPFSDLFFDYLQCIQTLAAAEgSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVSEDMTYSYRE--EKGFIASLVLN 179
                 679***********************************9999566777777***************************99999865..55555555555 PP

                 S----HHHHHHHHHTTTS-HHHHHHS---GGGHHHHHHHHHHHHHHHSS..S-SGG CS
      RecO_C 102 grplspetlallrlllrgdleklgelkvspeelrellrllrayleehler.plksr 156
                 +r+ + + l  l     +          +++ lr+++r++r+ l+ +l++ plks 
  EHT99699.1 180 QRSFTGKHLQALSTREFP----------DADALRAAKRFTRMALKPYLGGkPLKSQ 225
                 555555555555444444..........789***********************97 PP

>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   7.9e-26   7.1e-22       5      78 ..       4      76 ..       1      78 [. 0.96

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 7.9e-26
                EEEEEEEEEEEETTSEEEEEEEETT.EEEEEEEET-..TTSTTTTTS-TT-EEEEEEESSS-SSEEEEEEEEEE CS
      RecO_N  5 kteaiVLksrkygEsdlivtlfTrehGkvsalargarksksrlrallqpftllevqlrkkgrgLktlkqaelik 78
                 ++a+VL+sr+++E++l+++lf++++G+v++la+gar+++s+l++ lqpft+  v+++ ++++ ktl++ae ++
  EHT99699.1  4 WQRAFVLHSRPFSETSLLLDLFSESEGRVRVLAKGARSRRSQLKGTLQPFTPQLVRWS-GRGEVKTLRNAEAVS 76
                689*******************************************************.************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1795.93
//
Query:       EHT99700.1  [L=243]
Description: pyridoxine 5'-phosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.1e-106  353.8   1.0   3.5e-106  353.6   1.0    1.0  1  PdxJ          Pyridoxal phosphate biosynthesis protein PdxJ
     0.0013   18.2   0.2      0.011   15.2   0.1    2.2  2  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.013   14.9   0.5        3.2    7.2   0.0    2.2  2  PEP_mutase    Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> PdxJ  Pyridoxal phosphate biosynthesis protein PdxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.6   1.0  5.8e-110  3.5e-106       2     233 ..       6     237 ..       5     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 353.6 bits;  conditional E-value: 5.8e-110
                 EEEE-HHHHHHHHCCSSS-S-HHHHHHHHHCCT.SEEEEE--TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SCCCCSTT CS
        PdxJ   2 LgVnidhvAtlRnarggnePdvveaaelaeeaGAdgitvhlreDrRhiqdeDveelkelvktelnlEmalteemleialelkpeqvtLVPekreeltte 100
                 LgVnidh+At+Rnarg+++Pd+v+aa++ae+aGAdgitvhlreDrRhi+d+Dv+ l+++++t++nlEma+t+eml+ia+++kp+ ++LVPekree+tte
  EHT99700.1   6 LGVNIDHIATVRNARGTHYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRNTIETRMNLEMAVTDEMLNIACDIKPHFCCLVPEKREEVTTE 104
                 9************************************************************************************************** PP

                 SSB-TGGCHCCHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHCT-SEEEEETHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTCHHH CS
        PdxJ 101 gGldvakeeeklkevikelkeagirvslFidpdkeqieaaaelgadvvELhtgaYaeaaeeeereeelerlkeaaklakelgLevnaGHgLnyenvkai 199
                 gGldva+++ekl++++k+l+eagi vslFidpd++qieaa + ga+++E+htgaYaea e  +r++el+r+++aa++a++ gL+vnaGHgL+y+nv +i
  EHT99700.1 105 GGLDVAGQQEKLNAAVKKLSEAGILVSLFIDPDHRQIEAAVTSGAPYIEIHTGAYAEAPEGPARDAELARIRQAATFAASRGLKVNAGHGLTYHNVLPI 203
                 ***********************************************************9999************************************ PP

                 HTSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHH CS
        PdxJ 200 akipeieelnIGhaliaealfvGleeavremkel 233
                 a++pe++elnIGha+i +a++ Gl +av++mk+l
  EHT99700.1 204 AALPEMHELNIGHAIIGRAVMSGLPDAVKAMKQL 237
                 ********************************97 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.069   4.1e+02       4      22 ..      34      52 ..      29      84 .. 0.70
   2 !   15.2   0.1   1.8e-06     0.011      73     127 ..     138     189 ..     100     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.069
                  HHHCT-SEEEEECCTCSHH CS
  AP_endonuc_2  4 aaeaGfdgvElfgrdlvpv 22
                  a++aG+dg+ +++r+++  
    EHT99700.1 34 AEQAGADGITVHLREDRRH 52
                  6667777777777666554 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.8e-06
                   HHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEE CS
  AP_endonuc_2  73 kraielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvkl 127
                   +r+ie+a   Gap++ +h+G   a+++ +e  a++   ++++++a +a+ +g k+
    EHT99700.1 138 HRQIEAAVTSGAPYIEIHTG---AYAEAPEGPARDAELARIRQAATFAASRGLKV 189
                   689*****************...9999999999*******************987 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00053       3.2     164     186 ..      33      55 ..      13      83 .. 0.76
   2 ?    6.4   0.2   0.00093       5.5     111     227 ..     101     227 ..      89     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00053
  PEP_mutase 164 aYaeAGAdgvfvpglqkdaeiae 186
                    +AGAdg++v+ ++++  i++
  EHT99700.1  33 IAEQAGADGITVHLREDRRHITD 55 
                 5678***********98887754 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00093
  PEP_mutase 111 daerqlldieefaekiaaaraaaeeagfvinARtdalllsagagleeaieRaraYae..AGAdgvfvpglqkdaeiaelvaavd......vplnvvp.l 200
                  +++  ld++ ++ek++aa+++ +eag+++      ++   + ++e a++ +  Y e   GA +    g  +dae+a++ +a        + +n+   l
  EHT99700.1 101 VTTEGGLDVAGQQEKLNAAVKKLSEAGILVS----LFIDPDHRQIEAAVTSGAPYIEihTGAYAEAPEGPARDAELARIRQAATfaasrgLKVNAGHgL 195
                 37788999*******************9986....5555578889999999999998778999999999999988888887776566755334433321 PP

  PEP_mutase 201 kgt.......lsvaelaelGvarislgnhllraa 227
                   t         + e++el ++  ++g +++  +
  EHT99700.1 196 --TyhnvlpiAALPEMHELNIGHAIIGRAVMSGL 227
                 ..12345555777788888888888887777643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1843.33
//
Query:       EHT99701.1  [L=126]
Description: holo-[acyl-carrier-protein] synthase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-24   85.3   0.0    3.5e-24   85.1   0.0    1.0  1  ACPS            4'-phosphopantetheinyl transferase superfamil
      0.003   17.6   0.1     0.0056   16.7   0.1    1.4  1  Tecti-min-caps  Tectiviridae, minor capsid
  ------ inclusion threshold ------
       0.06   12.8   0.1       0.13   11.7   0.0    1.5  2  AP_endonuc_2    Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0   5.9e-28   3.5e-24       1     114 []       5     122 ..       5     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 5.9e-28
                 EEEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EEEE-S-SSEEEEEE CS
        ACPS   1 gvGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrklldfksievledstgrptlellseakkkawk 99 
                 g+G Di++++r+ + ++r+g+++++r+++e+E++++++  ++ r  ++a+++a+KEA+ Ka+g+g+r  l f+++ev +d+ g+p l++++ a+  a++
  EHT99701.1   5 GLGSDIVEIERIADVISRSGDRLARRVLSEAEWQQYQQHRQPVR--FLAKRFAVKEAAAKAFGTGIRGGLAFNQFEVYNDALGKPLLRFFDHAAEVAQR 101
                 69************************************888887..***************************************************** PP

                 EE-..........SSEEEEEE CS
        ACPS 100 leslkid......kdyviavv 114
                 l++++++      + y++a+v
  EHT99701.1 102 LGVQHVHvtladeRHYACATV 122
                 *******99999888888875 PP

>> Tecti-min-caps  Tectiviridae, minor capsid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   9.3e-07    0.0056      38      77 ..      39      77 ..      26      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.3e-07
                    ----S----S--S----SS--------------------- CS
  Tecti-min-caps 38 giqqarqfmpflqgphravaeqtyhaigtgiqmgqtfnqp 77
                      qq rq + fl     av e + +a gtgi+ g +fnq 
      EHT99701.1 39 QYQQHRQPVRFLAK-RFAVKEAAAKAFGTGIRGGLAFNQF 77
                    6799*******975.679********************95 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.22   1.3e+03     106     121 ..      13      28 ..       6      57 .. 0.70
   2 ?   11.7   0.0   2.1e-05      0.13      29      90 ..      55     110 ..      36     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.22
                   HHHHHHHHHHHHHHHH CS
  AP_endonuc_2 106 werlaeslneladyae 121
                   +er+a+++ + +d ++
    EHT99701.1  13 IERIADVISRSGDRLA 28 
                   5566666666555555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.1e-05
                   HHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEE CS
  AP_endonuc_2  29 elrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlh 90 
                   +++e ++ +  +g+r  +  +f++f+  ++ ++++     ++++ +a+e a++LG+ ++++ 
    EHT99701.1  55 AVKEAAAKAFGTGIR--GGLAFNQFEVYNDALGKPL----LRFFDHAAEVAQRLGVQHVHVT 110
                   556666666666666..8888888888888899999....*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 912.64
//
Query:       EHT99702.1  [L=57]
Description: iron-sulfur binding 4Fe-4S ferredoxin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0052   16.5   0.4     0.0059   16.4   0.4    1.1  1  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl
  ------ inclusion threshold ------
       0.01   15.9   2.0      0.017   15.2   2.0    1.4  1  Fer4_2    4Fe-4S binding domain
       0.01   15.9   1.2      0.016   15.3   1.2    1.3  1  Fer4_10   4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   9.8e-07    0.0059      20      45 ..       9      38 ..       3      49 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.8e-07
                HHTT----T....T-HHHHCSTT---HHHH CS
     Fer4_20 20 eAsRClqCk....kapcvkgCPveidipef 45
                e sRC +C      ++c++ CP++++i + 
  EHT99702.1  9 EVSRCTECVghydVPTCQRVCPIDNTIVTD 38
                789*****64443678********999654 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   2.0   2.8e-06     0.017       3      21 ..       6      30 ..       4      31 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.8e-06
      Fer4_2  3 vvvdtdrCigC.g.....aCvsaCP 21
                ++++  rC++C g     +C+ +CP
  EHT99702.1  6 YEIEVSRCTECvGhydvpTCQRVCP 30
                678999******678899******9 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.2   2.6e-06     0.016       3      39 ..       7      45 ..       5      51 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-06
     Fer4_10  3 vidddtCirCg......kCvkaCPadltsvgakgeaseeeavr 39
                +i+ ++C++C       +C+++CP d    +++  + ++ + r
  EHT99702.1  7 EIEVSRCTECVghydvpTCQRVCPID----NTIVTDPQHIESR 45
                688899999988888999******94....4444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 499.23
//
Query:       EHT99703.1  [L=465]
Description: hypothetical protein CKS_1653 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-05   23.2   0.0    0.00013   21.8   0.0    1.6  2  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.29   5.1e+03     121     138 ..     131     149 ..     110     151 .. 0.62
   2 !   21.8   0.0   7.4e-09   0.00013       9     116 ..     241     357 ..     234     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.29
                      HCT-S.SC--TTHHHHHHH CS
  Phage_integrase 121 eagie.kpltpHtlRhsfa 138
                      ea+++ ++l+ H+ R ++a
       EHT99703.1 131 EAKVQrQKLSEHSYRTYCA 149
                      2333367788888887776 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 7.4e-09
                      HHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE......EEECSSSSEEEEECTHHHHHHHHHHHHHH.CHCCTTTS CS
  Phage_integrase   9 erllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh......eregKgskeravplseealellkellska.leeaekse 95 
                       +l  ++  +++i++k++++++  tG+R  ++ +L+++ ++ + ++i  +         +K++ke  +p++  + + l+e+ + + ++   +++
       EHT99703.1 241 AKLWLNVAGCTSIHQKNAMRFMILTGVRPINVSNLQWDYVREDIKEIVYPagiigmRGAMKTQKEFRIPITAGIERILQEQKEWRdSVPGCNQQ 334
                      45555566699************************************9999**9999999***********77777777777766666888888 PP

                      BSSBET..TSSB--HHHHHHHHH CS
  Phage_integrase  96 llfask..rgkplsrqtvrkafk 116
                      ++f++   ++ p  +++++k +k
       EHT99703.1 335 FVFLQPrnPELPFAKRSLDKLIK 357
                      99988733344445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3681.74
//
Query:       EHT99704.1  [L=435]
Description: hypothetical protein CKS_1652 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-12   47.4   0.0    1.5e-12   46.9   0.0    1.2  1  SNF2_N      SNF2 family N-terminal domain
  ------ inclusion threshold ------
      0.015   15.6   0.0       0.06   13.7   0.0    2.0  2  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.7e-16   1.5e-12      64     306 ..       1     241 [.       1     269 [. 0.75

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.7e-16
                 TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHH.HHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  64 mGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslld.qWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvls 161
                 mG+GKTv +l+ +    +     +e        +p+L+++P  +++  W +e++++ +  ++++    g       ++++a+ + +++ v  t+Yd l 
  EHT99704.1   1 MGMGKTVATLTTLE---DLFMCGAE-------TQPVLVLAPLRVARsTWPDEVDKWNHLRNIEMQPIVGT-----VKERLAALQNTNASVYTTNYDNLV 84 
                 9***********99...44444444.......48********998736*********9999988777774.....3457888999999*********** PP

                 HHT......TTS-S-S.-SEEEES-GGGT--T......TSHHHHHHHH---S-EEE.E-S--SSS-HHHHHHHHHHH-TT.....TT--.HHHHHHHTH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.....xxxx.xxxxxxxxx RF
      SNF2_N 162 reaelqkkrsvlkqve.wkrvvlDEghtlkns......tskaaeavskLstsnrwi.ltGTPiqnsledlygLlkfLree.....pfge.kqtfdkllq 246
                   +      ++l ++     vv DE  +lk+       ++ aa a    +  +rw+ ltGTP +n+l+dl+g   f+  +      fg     + + +q
  EHT99704.1  85 WLV------ETLGDRWpFGTVVADESTRLKSFrlrqggKRAAALAKVAHKHVHRWMnLTGTPAPNGLIDLWGQAWFVDQGqrlgrTFGAfTSRWFNNIQ 177
                 777......67765542678***********9666544333333333357999**88*******************98752222257774447778888 PP

                 HHHH.....HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH..... CS
                 xxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 247 rpie.....aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllev 306
                  p +     + ++  ++++   l+ + ++   +d   ++ +++ ++i++++ ++ r+ Y+++ ++
  EHT99704.1 178 FPGQqwsklEPRPFAQEQMQAALRDVTISLDAADW-FDIEEPIHNVIRVQMPAKARQQYQEMEKQ 241
                 88887776666666777777777777777777777.79**********************44333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.81   7.3e+03      85     102 ..     219     236 ..     214     239 .. 0.71
   2 ?   13.7   0.0   6.6e-06      0.06      57     108 ..     330     383 ..     286     385 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.81
                 ESEEEESSSSSSHHHHHH CS
  Helicase_C  85 vnlVinfdlprnvtsyiq 102
                 +++Vi++++p + ++  q
  EHT99704.1 219 IHNVIRVQMPAKARQQYQ 236
                 688999999966555444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.6e-06
                 HHHHHHHTTSSSEEEESGG.GTSSSTSTTE.SEEEESSSSSSHHHHHHHHTTSS CS
  Helicase_C  57 eileqfnkgesdvLiatdv.aerGidipkv.nlVinfdlprnvtsyiqriGRtg 108
                 ++l+++n+g++ vL a  + a+ G+++++  n + +f+ ++++++y+q i R+g
  EHT99704.1 330 QTLRDWNAGKIPVLFAHPAsAGHGLNLQDGgNILAFFSHWWDLEQYQQIIERIG 383
                 899***********99865499******761556688999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3176.59
//
Query:       EHT99705.1  [L=100]
Description: VRR-NUC domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-05   23.1   0.0    9.2e-05   22.5   0.0    1.3  1  VRR_NUC   VRR-NUC domain


Domain annotation for each model (and alignments):
>> VRR_NUC  VRR-NUC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.1e-09   9.2e-05      53     107 ..      32      83 ..      24      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.1e-09
                 SSTS-SEEEEETTTTE..EEEEEEE-TT----HHHHHHHHHHHHTT-EEEEEEEE CS
     VRR_NUC  53 rsGvPDLilwieeqkryvflliEvKgpgdrlsdnQrkwldelarsgvrvevcrvs 107
                 r  vPD +++++ ++   + ++E K+pg + +++Q + +++l++ g+ v v+ ++
  EHT99705.1  32 RRAVPDRLVLLPGGR---AVFVECKAPGEKPRPEQLREHERLRALGFTVIVLDSK 83 
                 667899888888888...8********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 787.24
//
Query:       EHT99706.1  [L=65]
Description: hypothetical protein CKS_1650 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   22.2   1.5    0.00016   21.9   1.5    1.1  1  PerC      PerC transcriptional activator


Domain annotation for each model (and alignments):
>> PerC  PerC transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   1.5   8.6e-09   0.00016       5      56 ..       7      58 ..       3      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.6e-09
        PerC  5 kvaekLeakGlyRRaadRWaevmvlletdaeRklvalkRaeClrkasrpplp 56
                + a ++e++G yRRaa+ W++   l  +  + ++   +  +Cl ++ r+ l+
  EHT99706.1  7 REAAQIEREGDYRRAAKVWTKASRLSRNGINQQWSENRSDFCLMQVGREKLK 58
                67899****************99888899****************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 582.96
//
Query:       EHT99707.1  [L=700]
Description: DNA-directed DNA polymerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-12   46.9   0.0    2.8e-08   33.2   0.0    2.2  2  DNA_pol_A       DNA polymerase family A
    0.00037   20.3   0.1      0.015   15.0   0.0    2.3  2  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.1e-12   2.8e-08      90     216 ..     297     465 ..     227     494 .. 0.76
   2 !   11.7   0.0   1.1e-05       0.1     297     370 ..     625     693 ..     599     699 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 3.1e-12
                 TTTGGGCCBTTTSEE--EEE.SSSSSSSS-EEESS-GGGS-...........................TTSCCHHHHHHTBCG.TTCCEEEEEEETTHH CS
   DNA_pol_A  90 vdallklinkktgrihtsfn.qtvtatGrlsssepnlqnip...........................irteegrriRkafvaeegghvllsaDysqiE 160
                  ++l+k ++ ++gr+ ++ +    ++tGr + +    qn+p                           + +  +  +R +++a+ g ++l+  D s iE
  EHT99707.1 297 YKTLMKGVS-RDGRLRGTQQfCGASRTGRWAGRLFQPQNLPrprlkqndidcgiealkagcadllyddVMQLTSSALRGCIMAPAG-KKLVVSDLSNIE 393
                 444555553.4566655433134456777777777777777666666666666555555555544444333555678*******96.56********** PP

                 HHHHHHHCT.HHHHHHH................HTTH-HHHHHHHHHCTS.GGGHHHHHHHHHHHHHHHHHT CS
   DNA_pol_A 161 LRilAhlsgdeklieaf................kegeDiHsktAsevfgvpveevtkeqRrqaKainfGiiY 216
                  R+lA l+g++  ++af                ++g+D+++   ++ fgv+ +ev+k+qR+  K+   ++ Y
  EHT99707.1 394 GRVLAWLAGEKWKLQAFrdydtiigtdekgeaiRAGHDLYKLAYAKSFGVHPDEVDKDQRQVGKVQELALGY 465
                 ***********99999988888888877777778888***************************97766665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHH..SSS--EEEEEE CS
   DNA_pol_A 297 piQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveevaelvkeamesave..ldvplkvevkv 370
                 + Q +A D++   m  +e++         ++l+vHDE++ e+p++  +  ++l +    +  e  ld+pl++  + 
  EHT99707.1 625 VTQATARDVMAANMPGVEDNG------YDIILTVHDEVLTEAPDTTDYSHEHLSTLLA-TNPEwaLDLPLSAGGFE 693
                 469999999999999999887......469*************998887776555444.22234577777766555 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.7e-06     0.015      69     171 ..      57     180 ..      20     182 .. 0.82
   2 !    2.9   0.0     0.009        81      48     130 ..     210     288 ..     193     306 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-06
                     HHHHHT-TTSEEEESSHHHHHHHHHHHHTS--SSEEEHHHHHHHTTHSTT..SSHHHHHHHHHSB---GHCCTTSSTTT..SSS-HHHHH..... CS
  DNA_pol_A_exo1  69 lkrlledenitkvghnakfDlevlardfgielenlfdtmlaayvldyers..hsLdsLaekylgdleldkeeqiakwqk..arplleeql..... 154
                     l+  l+++ + +  hn  fD+ vl + +     + +d+  +++v ++  +   sL +L++ +   +++ k++  ++  +  ++p +++ +     
      EHT99707.1  57 LRLALKNPDVLIYAHNSHFDRTVLNHAMPGVAAGGVDRWRDTMVRALAHGlpGSLGDLCDILSVSQDKAKDKAGKQLIQlfCKPRPKNSTirrat 151
                     667899*********************66666666666666666666666666*******99888999999999999999977777776667777 PP

                     ............HHHHHHHHTHHHHHHHH CS
  DNA_pol_A_exo1 155 ............lYAaeDadvllrlfkkL 171
                                 +YA++D d+  ++ kkL
      EHT99707.1 152 akthpvewqrfvEYAGLDIDAMREIDKKL 180
                     888899999999*************9998 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.009
                     CSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHH...HTS--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHS CS
  DNA_pol_A_exo1  48 ekeeayiidplelgddvalealkrlledenitkvghnakfDlevlard...fgielenlfdtmlaayvldyershsLdsLaekylg 130
                       e+a+  +++e++    ++  ++l ++e     +++a++  ++l++    fgiel+ +    l+ +v+d++  + L +L++  l+
      EHT99707.1 210 LAEAAVTAVEMEQKV--LAKRTRELTDNE-----VQAATQRDAMLKHIaeaFGIELPDMQASTLQRRVNDPDLPFELRELLAIRLQ 288
                     444444433433333..455566655555.....34443333334444666***************************99886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5338.50
//
Query:       EHT99708.1  [L=250]
Description: hypothetical protein CKS_1647 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-60  203.5   0.0    4.3e-60  203.1   0.0    1.0  1  DUF2303   Uncharacterized conserved protein (DUF2303)


Domain annotation for each model (and alignments):
>> DUF2303  Uncharacterized conserved protein (DUF2303)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   0.0   2.4e-64   4.3e-60      18     254 ..      14     244 ..       2     249 .. 0.93

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 2.4e-64
     DUF2303  18 veiinaqdgvplvalPdgyrlksleelqdqpaRfrGtvklqdiasfiayvnrhkgeesaifidadkmsavavfdlgta.dapghadhrAtlklkktaef 115
                 ++++n  +g+p++a+P+gy l +le +  +p R r++vkl +++sfi+y+ ++  + s+i +da++++ +a +d ++    p ++ h A+++  k++++
  EHT99708.1  14 NQLLN-VNGTPAIAMPEGYELADLEHFLPAPRRIRQNVKLLSADSFIQYCSKFATDASVILADANQTKLTAQLDYHADpATPDWCSHSAVYQCVKSKPW 111
                 44555.89********************************************************************98578****************** PP

     DUF2303 116 kawtgidgkklsqaelaeflEdnakdivngkspdgetlleiaraleairkvtiksalrrddgetdfsfkeeakesveaklklPeqftlaippyeggaer 214
                 k w++ d+ ++ q+ +aeflEd a div    p+g++lleia+++++irk  + sa+r+ +ge +f+++ e+++      ++Pe +tl + p+ +g+++
  EHT99708.1 112 KIWEEHDETAMGQEAFAEFLEDRAGDIV---TPTGAELLEIATKFQVIRKAVFGSAIRLATGEFQFNYSDENDKG---TIEVPEVITLGLAPFHNGESY 204
                 ***************************9...********************************999998665443...378****************** PP

     DUF2303 215 rielrlryrtddgelvlilrlvraeavleeaaeefaeeie 254
                 ++++rlryr  +g+l ++++l+++e+v+e+a++ ++e ++
  EHT99708.1 205 EVQARLRYRLREGKLAFTFKLINPERVIEDAFNSVVESVK 244
                 *********************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1949.46
//
Query:       EHT99709.1  [L=69]
Description: hypothetical protein CKS_1646 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 569.05
//
Query:       EHT99710.1  [L=345]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-98  327.2   0.0    1.1e-97  327.0   0.0    1.0  1  DDE_Tnp_IS66    Transposase IS66 family
    2.3e-16   59.7   0.1    7.7e-16   58.0   0.1    2.0  1  DDE_Tnp_IS66_C  IS66 C-terminal element


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.0   0.0  1.2e-101   1.1e-97       2     281 ..       9     294 ..       8     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 327.0 bits;  conditional E-value: 1.2e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99710.1   9 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 105
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99710.1 106 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 201
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99710.1 202 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 294
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   8.6e-20   7.7e-16       1      39 []     301     338 ..     301     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 8.6e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99710.1 301 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 338
                     9************************9.************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 3060.30
//
Query:       EHT99711.1  [L=262]
Description: formate efflux transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-77  257.8  32.1    8.7e-77  257.6  32.1    1.0  1  Form_Nir_trans   Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6  32.1   4.8e-81   8.7e-77       1     235 [.       8     248 ..       8     249 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.6 bits;  conditional E-value: 4.8e-81
                     HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCTTCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSSSC CS
  Form_Nir_trans   1 eivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaesnpglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkvsl 95 
                     ei++ +++agv+k + s+ +l++lg++AGafi+ g+ll + v ++l+++  +++ +lg++vFpvGlil +l+g+eL+Tgn+++l++a+++++vs 
      EHT99711.1   8 EIAQLAIQAGVAKSHASISSLIILGFMAGAFIATGFLLDVHVINSLPADWGSFGGFLGAAVFPVGLILTILAGGELLTGNMMTLPIAWFARRVSG 102
                     688999****************************************99988999***************************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG....HHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  96 kkllknwlvvllgNliGsllvalllvvlsgll....aekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafva 186
                      ++l+nw++v+++N++Gs+ +a+++ ++ +++     +k+l+ia+ak++++fl+af++Gi+CNwlVclavwla+a+kdv+gki+++++p++afva
      EHT99711.1 103 YSVLRNWFWVTIANFLGSIAIAWFFGHMLAMTegdyLKKTLAIANAKVHADFLHAFISGIGCNWLVCLAVWLAFASKDVVGKIFGMWFPVMAFVA 197
                     ******************************9666669********************************************************** PP

                     CT---HHHHHHHHHHHHHH...SHHHHHHHCHHHHHHHHHHHHHCCHHHHHH CS
  Form_Nir_trans 187 sgfeHsvanmfliplglll...tvadfilknlipvtlGNivGGallvgllyl 235
                     +gf+H+vanmf+ip+++++   t+a+++  n+++v+lGN vGGa++vgl+y+
      EHT99711.1 198 IGFQHVVANMFIIPAAIFAgqmTWAEYF-PNFVAVFLGNAVGGAVFVGLAYF 248
                     *****************999999***97.9********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2078.28
//
Query:       EHT99712.1  [L=117]
Description: putative negative regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-41  139.0   0.1    1.2e-40  138.7   0.1    1.1  1  DUF1323       Putative transcription regulator (DUF1323)
    0.00051   20.0   0.0    0.00097   19.1   0.0    1.6  1  HTH_29        Winged helix-turn helix
     0.0036   17.1   0.0     0.0074   16.1   0.0    1.4  1  HTH_23        Homeodomain-like domain
      0.008   16.0   0.1      0.013   15.4   0.1    1.3  1  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.016   15.4   0.0    1.5  1  HTH_17        Helix-turn-helix domain
      0.016   15.3   0.0      0.029   14.5   0.0    1.5  1  HTH_28        Helix-turn-helix domain
      0.022   14.9   1.1       0.21   11.8   1.1    2.0  1  HTH_Tnp_Mu_1  Mu DNA-binding domain
      0.036   14.1   0.0      0.066   13.3   0.0    1.4  1  HTH_3         Helix-turn-helix


Domain annotation for each model (and alignments):
>> DUF1323  Putative transcription regulator (DUF1323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.1   5.4e-44   1.2e-40       1     122 []       6     117 .]       6     117 .] 0.96

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 5.4e-44
     DUF1323   1 mtpeelaellGyarqtinrWvRkegWkteplpGvkGGkarlvlideqvrefirnaealrnsaalyrveetlaeyavtvdaelealliealeeltpseqk 99 
                 +tpeela  +Gy+rqt+n+W+++e+W+t+p+pGv+GGkarl++ide+v++fi++++         +++e +++y +   ++l alli+++++++++eq 
  EHT99712.1   6 LTPEELAIETGYSRQTVNKWIKRENWTTTPKPGVQGGKARLIHIDERVKSFIQSTR---------NLNELTGNY-TPPPNSLPALLISSVQQMSQNEQD 94 
                 69******************************************************.........889999***.566789****************** PP

     DUF1323 100 klasllsreGiagllaRLgirds 122
                 +l+ l++reGi+g+l+RLgir++
  EHT99712.1  95 QLMALILREGIKGVLERLGIREE 117
                 ********************985 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.3e-07   0.00097       9      35 ..       2      28 ..       1      52 [. 0.89

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.3e-07
      HTH_29  9 aeGvstvsqiAkllglsrrtvyrwlkr 35
                ++++ t+ ++A  +g+sr+tv++w+kr
  EHT99712.1  2 KKEWLTPEELAIETGYSRQTVNKWIKR 28
                667789********************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.3e-06    0.0074      19      40 ..       7      28 ..       6      30 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-06
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                +++e A e g sr+Tv +w+kr
  EHT99712.1  7 TPEELAIETGYSRQTVNKWIKR 28
                78999****************9 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   5.7e-06     0.013      15      43 ..       7      35 ..       4      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.7e-06
  Terminase_5 15 rvaeIAeelglkeatVysWkkrdewddld 43
                 ++ e A e g +++tV  W kr++w  ++
   EHT99712.1  7 TPEELAIETGYSRQTVNKWIKRENWTTTP 35
                 78999********************8765 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   7.1e-06     0.016       1      24 [.       5      28 ..       5      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-06
      HTH_17  1 lltveEaAelLgvsrstvyrlirr 24
                +lt+eE+A   g sr+tv ++i+r
  EHT99712.1  5 WLTPEELAIETGYSRQTVNKWIKR 28
                9*********************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05     0.029      14      36 ..       7      29 ..       1      30 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
      HTH_28 14 svreaArelgisrrtvyrWikry 36
                +  e+A e g sr+tv +Wikr 
  EHT99712.1  7 TPEELAIETGYSRQTVNKWIKRE 29
                67899****************96 PP

>> HTH_Tnp_Mu_1  Mu DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   9.2e-05      0.21      14     108 ..      20     107 ..      15     114 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-05
                   HHHHHHHHHCT--EEEESSSTTTTEEEE-GGGS-HHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  HTH_Tnp_Mu_1  14 agvtkkAkkegWkkrkreGvkgGkAvEYdvnslPketraalllrlGllgaslgekevaselvetkderliallsklepdeqrkaaellskaGlka 108
                   + v k  k+e+W+   + Gv+gGkA   ++    ++ +  +   + l +   ++    ++  + +   li  ++++  +eq +++ l+ + G+k+
    EHT99712.1  20 QTVNKWIKRENWTTTPKPGVQGGKARLIHID---ERVKSFIQSTRNLNELTGNY----TPPPNSLPALLISSVQQMSQNEQDQLMALILREGIKG 107
                   6799999******************777764...33444442222222333333....4555555666666666666666666666666666665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     3e-05     0.066      10      35 ..       6      31 ..       2      36 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                HHHHHHHHHHTSSHHHHHHHHTTSSC CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGern 35
                l+ eeLA ++G sr+t++++++ e +
  EHT99712.1  6 LTPEELAIETGYSRQTVNKWIKRENW 31
                6889****************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 894.51
//
Query:       EHT99713.1  [L=384]
Description: glutamyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-74  248.2   0.0    1.1e-73  247.9   0.0    1.1  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d
  ------ inclusion threshold ------
      0.054   13.5   0.7        7.1    6.7   0.1    2.5  2  HTH_15        Helix-turn-helix domain of alkylmercury lyase


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.9   0.0   1.2e-77   1.1e-73      88     314 .]       1     217 [.       1     217 [. 0.99

  Alignments for each domain:
  == domain 1  score: 247.9 bits;  conditional E-value: 1.2e-77
                   HHHTTSEEEE-STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGGSBTTTBTSTSEE CS
  tRNA-synt_1c  88 LikkGkAYvcectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqeihdlvivksdiy 184
                   +++ G+AY+c+c+ke+le +re+q+++g  e++ryd+++++ +     +++a++e++vvR+++++e+sv f+D++rg i++++qe++dl+i+++d++
    EHT99713.1   1 MLEAGTAYKCYCSKERLETLRETQMANG--EKPRYDGRCRDSH-----EHHAADEPHVVRFRNPQEGSVIFDDQIRGPIEFSNQELDDLIIRRTDGS 90 
                   799********************99999..9************.....4699********************************************* PP

                   E-HHHHHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHH CS
  tRNA-synt_1c 185 PtYdfavvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpek 281
                   PtY+f+vv+dD++++ithv+r+e++++ntp++i++l+a+g++vp+++h++++l+ ++kklSKR++++   ++q++++++l+ealln+l+rlGw+ ++
    EHT99713.1  91 PTYNFCVVVDDWDMGITHVVRGEDHINNTPRQINILKAIGAQVPVYAHVSMILGDDGKKLSKRHGAVG--VMQYRDDGYLPEALLNYLVRLGWS-HG 184
                   ******************************************************************99..9***********************.9* PP

                   HHHHHHHHCCCSSS.EEEEHHHHHHHHHHHHHH CS
  tRNA-synt_1c 282 erelftreeliksfdlnresksleafdrkkLew 314
                   ++e+f+ +e+++ f+l+++sks++af+++kL+w
    EHT99713.1 185 DQEVFSVKEMTELFSLDAVSKSASAFNTEKLQW 217
                   *******************************98 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1   0.00079       7.1      36      61 ..     302     327 ..     278     329 .. 0.91
   2 ?    4.7   0.0    0.0031        28      36      63 ..     355     380 ..     350     384 .] 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00079
      HTH_15  36 VtveeLAaatgrsveevrqaLaalps 61 
                 V +++LAa t +  e v++a+++ ++
  EHT99713.1 302 VVRDKLAALTDWNAETVHAAIQQAAD 327
                 7899****************999887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0031
      HTH_15  36 VtveeLAaatgrsveevrqaLaalpstE 63 
                 Vtve +     rsve++++aLa +++ E
  EHT99713.1 355 VTVEAIG--RSRSVERIEKALAFIAERE 380
                 6777655..469**********998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3030.00
//
Query:       EHT99714.1  [L=206]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-16   59.1   0.0    5.1e-16   58.7   0.0    1.2  1  DDE_3     DDE superfamily endonuclease
    2.6e-07   30.2   2.4    1.8e-06   27.5   0.3    2.3  2  HTH_33    Winged helix-turn helix
     0.0038   17.8   0.1      0.012   16.2   0.1    1.9  1  HTH_32    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   8.6e-20   5.1e-16       2     118 ..      87     202 ..      86     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 8.6e-20
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99714.1  87 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 185
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPe 118
                 ++   +++++y P ySP+
  EHT99714.1 186 KA-NPKFRVIYQPIYSPW 202
                 *9.9*************9 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3     3e-10   1.8e-06       3      52 ..      18      67 ..      16      72 .. 0.95
   2 ?    2.3   0.1     0.021   1.3e+02      28      42 ..     150     164 ..     144     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3e-10
      HTH_33  3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52
                 rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99714.1 18 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 67
                69**********************************************98 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.021
      HTH_33  28 yrlLkrlGfsyqkPr 42 
                  rlLk+l+ +y++++
  EHT99714.1 150 IRLLKHLKATYRRAK 164
                 59**********997 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.9e-06     0.012      37      73 .]       2      46 ..       1      46 [. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
      HTH_32 37 iiallreep........rWsprqlaarlaeregvkvShstvyriL 73
                +++l+++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99714.1  2 LRELVKHSPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 46
                56777556688888888***********7777888********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1627.29
//
Query:       EHT99715.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99715.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99715.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99715.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99715.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 726.04
//
Query:       EHT99716.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99716.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 949.15
//
Query:       EHT99717.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-98  328.3   3.2    3.2e-97  325.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    9.1e-12   45.6   8.5    1.9e-11   44.6   8.5    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.046   12.3   7.1      0.072   11.6   7.1    1.3  1  FUSC             Fusaric acid resistance protein family
      0.046   12.9   1.3       0.09   12.0   1.3    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.05   13.2   1.7      0.072   12.6   0.5    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
        0.1   12.3   1.6       0.81    9.4   0.3    2.2  2  LXG              LXG domain of WXG superfamily
       0.13   12.6   3.2       0.93    9.9   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   11.8   4.7       0.24   11.2   4.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.22   11.8   2.3        0.6   10.5   2.3    1.7  1  HalX             HalX domain
       0.23   10.7   4.0       0.39    9.9   4.0    1.3  1  ALIX_LYPXL_bnd   ALIX V-shaped domain binding to HIV
       0.26   11.7   2.9       0.56   10.6   2.9    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.29   10.9  10.4       0.48   10.2  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.36   11.2   4.1       0.92    9.9   2.6    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.48   10.6   7.6       0.22   11.7   4.5    1.8  2  CREPT            Cell-cycle alteration and expression-elevate
        1.2    8.6   6.9        2.9    7.4   6.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
          2    8.7   6.7        0.3   11.4   1.2    2.3  2  ABC_tran_CTD     ABC transporter C-terminal domain
        7.3    7.3   8.3         15    6.3   1.9    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.069        59     168     229 ..      35     111 ..      21     122 .. 0.49
   2 !  325.4   0.0  3.7e-100   3.2e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.069
  DDE_Tnp_IS66 168 qaaaealarigklyaierearea..................eaeerlalrqeesrpllaeleawleeqlkkvlpksklgk 229
                   q++a   + i++l+a+ ++++++                  eaeer ++ qee +++l el++     l++ l++s ++k
    EHT99717.1  35 QRVAAYASAINRLKALVAKLQRMqfgksseklrektarqvrEAEERISALQEEMAEVLGELHD---PALPQPLRQSSARK 111
                   444444455555555555554222332222221111222223455555555555555555555...33455555555555 PP

  == domain 2  score: 325.4 bits;  conditional E-value: 3.7e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99717.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99717.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99717.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99717.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99717.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   8.5   2.2e-14   1.9e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99717.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGElhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************9666555555556667778888888888889999*********************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.1   8.5e-05     0.072     213     294 ..       4      89 ..       1     124 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99717.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********877775556666666666666666666666554 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   0.00011      0.09      47     106 ..      34      90 ..      25      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99717.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   8.4e-05     0.072     144     223 ..      10      99 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k........e 223
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +        +
    EHT99717.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgelhdpA 99 
                   33444445555555556666667778999999999988886655439999999***********************88844444333330 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99717.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00095      0.81     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.3   0.1      0.14   1.2e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00095
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHT99717.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99717.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                 56788888899999999999999999999988777 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2    0.0011      0.93      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    2.8   0.4      0.18   1.5e+02      33      53 ..      71      91 ..      68      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHT99717.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99717.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.7   0.00028      0.24     114     195 ..      10      95 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveey 195
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e 
  EHT99717.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5788887777776655577777899999**********9862678999**********************************9986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99717.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3    0.0007       0.6       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y + + +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l el d
  EHT99717.1 37 VAAYASAINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGELHD 97
                789*****************************8752277888***************9876 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   0.00046      0.39      74     164 ..       9      96 ..       4     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00046
  ALIX_LYPXL_bnd  74 taelraelqkyreileeAsesDkivrqklqenkedlelLsgpeeeleaa.lpssssaaasesveeqirklrsllekldelkaereqllkdlk 164
                     +a lra lq+ ++++ + +e ++ ++q+++++ +++  L++  ++l++  + +ss++      e+ +r++r++ e++++l++e +++l +l+
      EHT99717.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqFGKSSEK----LREKTARQVREAEERISALQEEMAEVLGELH 96 
                     7899***********************************998888888855565543....3455555777777999999999888888886 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.9   0.00066      0.56      32     107 ..      21      95 ..       4      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskalleei 107
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l e+
  EHT99717.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 5688999***********************9999877..66677888888999999************999887665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.4   0.00056      0.48      17      99 ..       5      89 ..       3      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
         ERM 17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeese 99
                + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ 
  EHT99717.1  5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMA 89
                66888999999****************************999999999999887335577789*******************986 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6    0.0011      0.92       9      65 ..      24      76 ..      21      94 .. 0.79
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHT99717.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHT99717.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHT99717.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHT99717.1 167 ACCSCDHI 174
                  35555554 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.5   0.00025      0.22      44     141 ..      10     115 ..       6     117 .. 0.78
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshiqsLPdLtelpd...vt 133
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  L d + lp+    +
  EHT99717.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLGELHDPA-LPQplrQS 107
                 56778999999********************99999999987615666776666655432111278888999999999999999998855.88877778 PP

       CREPT 134 gglapLPs 141
                 ++ +pLP 
  EHT99717.1 108 SARKPLPA 115
                 88899996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHT99717.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.9    0.0034       2.9      71     152 ..      14      97 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL +l +
    EHT99717.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                   55666666666666666666667777888889999999999877644778888999***********************99987 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4       2.5   2.1e+03      36      55 ..      32      52 ..       7      59 .. 0.42
   2 ?   11.4   1.2   0.00035       0.3       1      37 [.      65     101 ..      65     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
  ABC_tran_CTD 36 lysdp.eklaelsaeleelea 55
                  l s+  ++ a + ++l++l a
    EHT99717.1 32 LLSQRvAAYASAINRLKALVA 52
                  222222333333333443333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpely 37 
                   kl  k  r+  e e++I aL+ee+ae+  el dp+l 
    EHT99717.1  65 KLREKTARQVREAEERISALQEEMAEVLGELHDPALP 101
                   788899999*************************974 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.9     0.017        15      22      53 ..      12      43 ..      10      67 .. 0.88
   2 ?    2.7   1.4      0.24     2e+02      34      55 ..      68      89 ..      42     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99717.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                667889********************887665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessg 55
                ++  rq+r+ +er+++l+e+++
  EHT99717.1 68 EKTARQVREAEERISALQEEMA 89
                4555666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1458  (0.0813208); expected 358.6 (0.02)
Passed bias filter:                     1076  (0.0600145); expected 358.6 (0.02)
Passed Vit filter:                       155  (0.00864521); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 3785.19
//
Query:       EHT99718.1  [L=247]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-32  111.3   0.0    6.5e-32  109.5   0.0    2.0  1  Gp138_N   Phage protein Gp138 N-terminal domain


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   3.6e-36   6.5e-32       2      98 .]      20     128 ..      19     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 3.6e-36
     Gp138_N   2 Pgkivsfdpaavtatvqpaikkklsdg............etvelpllvdvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlh 88 
                 Pg+i sfdp++v ++v + +   +               + +++p+l d pvvfprggg+tltfpvk+Gdeclv++s+r++d+w+q+Ggvq++++ r h
  EHT99718.1  20 PGIIRSFDPETVSCEVDVGVMGAIPIIpenstsidrlnyDAQQFPMLLDAPVVFPRGGGCTLTFPVKPGDECLVIISSRDLDFWWQNGGVQNSNSGRNH 118
                 9****************99887765444456789999999*********************************************************** PP

     Gp138_N  89 dlsdafaivG 98 
                 d sdaf+i+G
  EHT99718.1 119 DFSDAFVIPG 128
                 *********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1853.13
//
Query:       EHT99719.1  [L=406]
Description: site-specific recombinase, phage integrase family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-21   76.6   0.0    3.1e-21   75.9   0.0    1.3  1  Phage_integrase  Phage integrase family
    3.4e-18   65.8   0.3    9.9e-18   64.3   0.3    1.8  1  Arm-DNA-bind_3   Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   3.5e-25   3.1e-21      25     170 ..     231     371 ..     207     373 .. 0.91

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.5e-25
                      HHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTSBSSBET..TSSB--HHHHHHHHH CS
  Phage_integrase  25 lllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeksellfask..rgkplsrqtvrkafk 116
                      ++++ll  tG+R++El++  + ++d +   + ++++++K+++ ++vpls++al+l+ ++ + +     k  llf+ +  ++k +s+ +++++fk
       EHT99719.1 231 MAARLLILTGVRTGELRAAAWTEIDEDSAQWEIPAERMKMRRPHIVPLSSQALQLISQIREIT----GKYPLLFPGRndPQKTMSEASINQVFK 320
                      66899********************************************99999999998888....8889******9999************* PP

                      HHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase 117 raveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthva 170
                      r++++     ++t+H +Rh+++t L e+g++   ++  l+H + +++  +Y+h++
       EHT99719.1 321 RIGYH----GKVTGHGFRHTMSTILHEQGYNSAWIEIQLAHVDKNSIrGTYNHAQ 371
                      *****....5669**********************************99****87 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.3   1.1e-21   9.9e-18       1      74 []       3      88 ..       3      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.1e-21
  Arm-DNA-bind_3  1 LTdkaikaladsdkklprd.....GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekkae 74
                    L+++++++++ ++  +p++     GL+l v+p+G+++++l+yr         +G yp+vsla+AR++++++++ + +G+DP+ ++++e
      EHT99719.1  3 LNARQVDTAKGRE--KPYKlsdggGLYLLVNPNGSRYWRLKYRidgkekllaIGVYPDVSLADAREQREQAKKGMTRGVDPNVARREE 88
                    6789999966444..34335579**************************9877********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3126.90
//
Query:       EHT99720.1  [L=374]
Description: phage-related capsid packaging protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-15   55.5   0.0    6.7e-15   55.1   0.0    1.1  1  Phage_portal  Phage portal protein


Domain annotation for each model (and alignments):
>> Phage_portal  Phage portal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.8e-19   6.7e-15      50     271 ..      95     330 ..      88     351 .. 0.72

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 3.8e-19
  Phage_portal  50 eflealvanlllygnayalivrdgr.rvvelyplppdrvt......grleydytddggg.vlpaddvlhirglpl.d..lkGlspleaareaielal 135
                   + + ++v ++l+ gnay +   ++   v  l+p  ++ ++      +  + +y  + +   ++  +++h+   p+ +  ++Gl+    a  +  l++
    EHT99720.1  95 QSFARFVQDYLVFGNAYLEKRTNRLgGVLTLEPALAKYTRrgvdleSYWFVNYGLTTQPyEFTRGNIFHLM-EPDiNqeIYGLPGYLSAIPSTLLNE 190
                   55678899***********997533555566666666555777665333333333333365699******9.5554578****99999999999*** PP

  Phage_portal 136 aaeeyaakffkngarpsgilkikapgklseeqreklkeefeeaysgasnagk......vavleggldykpl.slspkdaqflesrkfaaeeIarafg 225
                   +a  + +k + ng++ ++i    ++++ ++e  +++++++++a  g +n  +      +    +g+++ pl  + +kd +fl++++ ++++  +a +
    EHT99720.1 191 SATLFRRKYYINGSHAGFIMY-MTDAAQNQEDVNNIRKAMKSAK-GPGN-FRnlfmysPNGKKDGIQIIPLsEVAAKD-EFLNIKNVSRDDMMAAHR 283
                   ********************4.4444448888899999998554.4443.3323222222234456666664336666.****************** PP

  Phage_portal 226 vpphllgdlgksty..snieeanlafyentlepllkrieqelnrkLlk 271
                   vpp+++g+   +t    ++e+a++ f++n l+pl kr+ qeln +L +
    EHT99720.1 284 VPPQMMGIIPSNTGgfGDVEKASRVFVRNELMPLQKRL-QELNTWLGE 330
                   ********55555557*******************999.678889953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2783.28
//
Query:       EHT99721.1  [L=64]
Description: hypothetical protein CKS_3664 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 516.32
//
Query:       EHT99722.1  [L=36]
Description: hypothetical protein CKS_3663 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 305.62
//
Query:       EHT99723.1  [L=52]
Description: hypothetical protein CKS_3662 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      110  (0.00613531); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 442.14
//
Query:       EHT99724.1  [L=90]
Description: putative Ogr family transcription activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-14   53.3   2.2      3e-14   52.7   2.2    1.3  1  Ogr_Delta        Ogr/Delta-like zinc finger
  ------ inclusion threshold ------
       0.06   13.7   0.2       0.08   13.3   0.2    1.3  1  Lar_restr_allev  Restriction alleviation protein Lar
      0.069   13.1   2.3       0.11   12.5   2.3    1.3  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   2.2   5.1e-18     3e-14       1      47 []       4      50 ..       4      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 5.1e-18
   Ogr_Delta  1 rCPhCgapaaartsrnlskdvreryyqCsnfeCgatfvaaeeierti 47
                +CP C+a ++ r+s++  + v++ yyqC+n+eC+ tf+a e++ ++i
  EHT99724.1  4 KCPFCQAISHGRSSQYEAPSVKRTYYQCQNLECSSTFTALESVDTII 50
                6*****************************************99886 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.3e-05      0.08       5      37 ..       4      45 ..       2      70 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
  Lar_restr_allev  5 pCPfCggravlersqrvvaeigq.cvyCad..Cga......s 37
                      CPfC        sq+ + ++   + +C++  C        s
       EHT99724.1  4 KCPFCQAISHGRSSQYEAPSVKRtYYQCQNleCSStftaleS 45
                     7******99999999999877669****9999*996555432 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.3   1.8e-05      0.11      20      44 ..       4      37 ..       2      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
  Zn_Tnp_IS1595 20 vCPhCgsrkayrikt.......rglfqCke..Cr 44
                    CP+C+  ++ r ++       r ++qC+   C+
     EHT99724.1  4 KCPFCQAISHGRSSQyeapsvkRTYYQCQNleCS 37
                   6*****997777777788**********988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 727.07
//
Query:       EHT99725.1  [L=253]
Description: putative head size determination protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00064   19.4   3.9      0.026   14.1   0.0    2.3  2  Psu       Phage polarity suppression protein (Psu)
  ------ inclusion threshold ------
       0.37    9.9   5.3       0.63    9.1   3.6    1.9  2  APG17     Autophagy protein Apg17


Domain annotation for each model (and alignments):
>> Psu  Phage polarity suppression protein (Psu)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   1.9    0.0015        13       2      29 ..      18      45 ..      17      59 .. 0.85
   2 !   14.1   0.0   2.9e-06     0.026      61     106 ..     117     164 ..      57     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0015
         Psu  2 qealdqyltaaqeWlalktereaakqel 29
                q+al+   ta+++Wl+ + +++aa  ++
  EHT99725.1 18 QRALETLNTARNAWLEARRQQKAAADNI 45
                8999**********99888888887765 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-06
         Psu  61 nqaaregvysqeevlrisvedglnafmaenGsalaaala..PeliGrg 106
                    a++++++++ + +i  ++  ++fm+  G al  +l+     +Gr 
  EHT99725.1 117 AELAGKYIHAHDTLVGIRAKQIWEDFMQSHGKALIQTLSllKTTMGRE 164
                 4569******************************87765114556643 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.6     7e-05      0.63       4      87 ..      18     102 ..      16     107 .. 0.87
   2 ?   -0.0   0.0     0.041   3.7e+02      76     118 ..     139     188 ..     125     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHIIIIIIIII.IIIIIIIIHHHHHHHHHHHHH CS
       APG17   4 laAkksLseaqtlcqrAnelltsarqeleeavkllakteflrdglkqQlkllekirkslerkl.ekgkeefkdlikeldaanerL 87 
                 ++A ++L++a +   +A+ + ++a ++++++ + +a++e  +++l++++++l +  +++  k  +k+++e++   ++l++ +e L
  EHT99725.1  18 QRALETLNTARNAWLEARRQQKAAADNISTIRQRCAEMEVTTNALNEEWRTLFRESQGVVSKEmKKLRTEIALGRETLEDFDELL 102
                 57999***********************************************996666666665999999988888777766665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHHHHHHHHHHTSS-TTS...............STGGGCS-- CS
       APG17  76 likeldaanerLektlekLrktkvepsfrpegee........ktLlDFvde 118
                 +++ ++ + ++L +tl+ L++t+  ++    g          + L+DF+ +
  EHT99725.1 139 WEDFMQSHGKALIQTLSLLKTTMGREASAVVG-VvnsvndpnTVLKDFIHK 188
                 55558888899999999999998766643333.146677777888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2037.93
//
Query:       EHT99726.1  [L=45]
Description: hypothetical protein CKS_3659 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 347.80
//
Query:       EHT99727.1  [L=890]
Description: hypothetical protein CKS_3658 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-98  329.8   0.3    2.5e-98  329.2   0.3    1.2  1  DUF927          Domain of unknown function (DUF927)
    1.5e-16   60.4   9.8    1.5e-16   60.4   9.8    2.6  3  Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
    8.1e-14   51.8   0.0    2.8e-13   50.0   0.0    2.0  1  Toprim_3        Toprim domain
     0.0023   18.4   0.0     0.0071   16.8   0.0    1.9  1  Toprim_4        Toprim domain
     0.0024   17.8   1.0     0.0068   16.4   1.0    1.7  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
     0.0049   16.4   1.7       0.01   15.4   1.7    1.5  1  TF_Zn_Ribbon    TFIIB zinc-binding
  ------ inclusion threshold ------
       0.01   15.5   3.6      0.035   13.8   3.6    2.0  1  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
      0.018   15.4   0.0      0.046   14.2   0.0    1.7  1  Toprim_2        Toprim-like


Domain annotation for each model (and alignments):
>> DUF927  Domain of unknown function (DUF927)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.2   0.3  1.1e-101   2.5e-98       1     286 [.     330     612 ..     330     613 .. 0.98

  Alignments for each domain:
  == domain 1  score: 329.2 bits;  conditional E-value: 1.1e-101
      DUF927   1 FrldkeglyvlkkkkdkegkteekvvicspleisartrdekgeneglllewrdkdgkkkewvmpaellsgdgsellkeLldeGltviskna..rklLak 97 
                 Frl++e l++ k+ +++++++ ++v ic pl+++a+t+d++g+n+g+llew+d+ g++++w+mp+e+lsg+g+el++ Ll +Gl++is++   r++L++
  EHT99727.1 330 FRLTQEYLWYEKQVQRNGETEIQNVKICNPLRVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGSGEELRRVLLVNGLSYISTTGeaRARLME 428
                 899*******99999997766655*****************************************************************9999****** PP

      DUF927  98 ylqqlesplpratvvdrlGwhkdedvFvlgdevigesgekeivlqeekaaeeaysekGtldeWrrqiaklvegnpllilavsaAlaapLLkllgaeggg 196
                 y++ + +p++r+t+v+r+Gwh  ++v+vl+dev ge +e  ++lq+ +++ ++++ +Gt +eWr+++++++ gn+++++avs A+aapLL+l+g++ggg
  EHT99727.1 429 YISLC-KPERRVTCVSRTGWH--GQVYVLQDEVSGEGAEG-VILQTTSVQGRDFRVSGTTEEWREHVSRYCTGNSRVAFAVSLAFAAPLLRLVGMDGGG 523
                 *****.***************..***************99.********************************************************** PP

      DUF927 197 lhlygeSstGKttalklAaSvwGnpeelvrswraTanglEglaaannDllLiLDEiseadprevgelvYmlanGqGkqRanrtgevrtsk 286
                 +hl geS++GKtt++k+A Sv+G+p+ ++++wraT n+lEg a+++nD+ ++LDEi+e+d re+g+++YmlanGqGk+Ra ++ge+rt k
  EHT99727.1 524 YHLKGESTDGKTTTMKAATSVCGGPD-YWQTWRATGNALEGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKGRAGTDGELRTRK 612
                 **************************.************************************************************986 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   9.8   6.7e-20   1.5e-16       1      38 []      32      68 ..      32      68 .. 0.97
   2 ?   -0.7   0.0      0.78   1.8e+03       8      19 ..     544     556 ..     543     563 .. 0.80
   3 ?   -2.5   0.1         3   6.7e+03      14      25 ..     795     808 ..     794     811 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 6.7e-20
                    EEEE--TTTT-TTTEEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon  1 gkhspCPvCGGrDrFrfddkdgrGtwfCrqCggggdgl 38
                    g+h+pCP CGG+DrFr dd dgrGtw+C+qC g+gdgl
      EHT99727.1 32 GRHGPCPKCGGKDRFRLDDLDGRGTWICSQC-GNGDGL 68
                    69*****************************.****97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.78
                     TTT-TTTEE.ETT CS
  Prim_Zn_Ribbon   8 vCGGrDrFr.fdd 19 
                     vCGG D +  ++ 
      EHT99727.1 544 VCGGPDYWQtWRA 556
                     8***998887875 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
                     TEE.ETT.....S- CS
  Prim_Zn_Ribbon  14 rFr.fddkdgr.Gt 25 
                     rF  + d+++r G 
      EHT99727.1 795 RFAdWHDERNRpGN 808
                     8999****999665 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.3e-16   2.8e-13       2      93 ..     209     304 ..     208     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.3e-16
    Toprim_3   2 liivEGietaLsileartgaaviAllsaanlkaiawp...e.rgkrvviaaDnDaandGreaaeklaerleaagieavllep.aegeDwndvlqkeG 93 
                 ++i+EG++taL++ ++ t+ +v+A++sa+nl ++a++   + +  +++ia DnD ++ G++  +  aer+++a    ++l+p + ++Dwnd+++++G
  EHT99727.1 209 VVITEGYATALTV-SQLTAGCVVAAISAGNLPNVALSlraRwPEVKIIIAGDNDFQDGGENPGRSFAERAAKAVGGWMTLPPgEIKADWNDFHREHG 304
                 79***********.89*********************9754455577*********999999999999999999999*****88888********99 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.2e-06    0.0071       2      78 ..     208     281 ..     207     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.2e-06
    Toprim_4   2 eiiiVEgyaDvlalekagiknvvavlg.galspldgirpeklktenlveaekkvkevilaldgDa......eGeataerlaell 78 
                 +++i+Egya++l +++     vva    g+l p+  ++ ++ ++        +  ++i+a+d+D       +G   aer+a+++
  EHT99727.1 208 QVVITEGYATALTVSQLTAGCVVAAISaGNL-PNVALS-LRARW--------PEVKIIIAGDNDFqdggenPGRSFAERAAKAV 281
                 69***************77777776555***.554444.33333........2389************************9954 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.0     3e-06    0.0068      18      44 ..      35      63 ..      30      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3e-06
  Zn_Tnp_IS1595 18 gfvCPhCgsrkayrikt...rglfqCkeCr 44
                   g+ CP+Cg++  +r+ +   rg + C+ C+
     EHT99727.1 35 GP-CPKCGGKDRFRLDDldgRGTWICSQCG 63
                   44.*******8888888888*********7 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.7   4.5e-06      0.01       3      27 ..      37      64 ..      35      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.5e-06
                  ETTTTCEE.CHEE..TSTTCEEESSSSB CS
  TF_Zn_Ribbon  3 CPnCgstn.lveD..pergelvCtdCGl 27
                  CP+Cg+++ + +D    rg+ +C+ CG+
    EHT99727.1 37 CPKCGGKDrFRLDdlDGRGTWICSQCGN 64
                  ******9989777699***********5 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.6   1.6e-05     0.035       3      29 ..      33      64 ..      31      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
     zf-RRN7  3 kgppCgvCgc.rsftldd....GfyyCrrCht 29
                ++ pC+ Cg+ ++f+ldd    G+++C  C++
  EHT99727.1 33 RHGPCPKCGGkDRFRLDDldgrGTWICSQCGN 64
                788*******88******************97 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     2e-05     0.046       1      90 []     210     300 ..     210     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGt.alteaalkllerypekkvvlalDnD..kaGrkaakrlaellreagvrekirelp..egk.Dwnell 90 
                 v++Eg+  al + ql       vva  +  +l++ al+l +r pe k+++a DnD  + G++  + +ae++ +a    ++  +p    k Dwn+++
  EHT99727.1 210 VITEGYATALTVSQLTAG---CVVAAISAgNLPNVALSLRARWPEVKIIIAGDNDfqDGGENPGRSFAERAAKAV-GGWMTLPPgeI-KaDWNDFH 300
                 689***********9996...55555544469999999999999999********65457777777777775444.56666666433.35****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 6049.29
//
Query:       EHT99728.1  [L=127]
Description: hypothetical protein CKS_3657 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-14   54.1   0.2    1.5e-14   53.8   0.2    1.1  1  DUF5375   Family of unknown function (DUF5375)


Domain annotation for each model (and alignments):
>> DUF5375  Family of unknown function (DUF5375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.2   8.3e-19   1.5e-14       6      96 ..      10     105 ..       5     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 8.3e-19
     DUF5375   6 spalraalyrravacawl..tlce...eqkryasltlarleraietelegfylrqhgrergreiacalledlleagplkaapslsflgqvvmdelc 96 
                 + ++ +alyrra+a aw   tl e   eq    slt++r+e ai+  +e   + ++g+++g   a all d+le   l a p l+  g  vm el 
  EHT99728.1  10 PAEMTTALYRRAIASAWQqkTLNEtgsEQYGPHSLTVERIEMAIALHIECALINEYGEAQGAAAALALLTDMLEPSLLTAPPVLTVRGCEVMAELY 105
                 568899***********64467652225666679************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 975.32
//
Query:       EHT99729.1  [L=94]
Description: hypothetical protein CKS_3656 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 827.00
//
Query:       EHT99730.1  [L=119]
Description: hypothetical protein CKS_3655 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0022   17.5   0.0      0.024   14.2   0.0    2.2  2  DUF4222   Domain of unknown function (DUF4222)


Domain annotation for each model (and alignments):
>> DUF4222  Domain of unknown function (DUF4222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-06     0.024       3      23 ..       5      25 ..       3      32 .. 0.89
   2 ?    0.7   0.0     0.022     4e+02      39      51 ..      54      66 ..      45      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-06
     DUF4222  3 iqpgdiYrDkrGvvVkvisvd 23
                +qpg ++ + rG++V++i+  
  EHT99730.1  5 PQPGERWQHERGWTVTIIRLL 25
                89****************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.022
     DUF4222 39 vaplerFnkeFer 51
                ++pl  F+++++r
  EHT99730.1 54 SCPLAWFEQRYTR 66
                789999*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 1110.56
//
Query:       EHT99731.1  [L=58]
Description: phage immunity repressor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 518.30
//
Query:       EHT99732.1  [L=38]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.092   13.0   0.0      0.095   13.0   0.0    1.1  1  HTH_Tnp_Tc3_2  Transposase


Domain annotation for each model (and alignments):
>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.3e-06     0.095      17      42 ..       2      28 ..       1      36 [. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.3e-06
  HTH_Tnp_Tc3_2 17 reLanelkee.GksvsreTirrrLrka 42
                   reL ++ +++ G +  +++i+r+Lrk+
     EHT99732.1  2 RELMEQAQQQdGDESLAAWIKRILRKE 28
                   8999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 324.44
//
Query:       EHT99733.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99733.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99733.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99733.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99733.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99733.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99733.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT99733.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99733.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99733.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99733.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99733.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT99733.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99733.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99733.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT99733.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99733.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99733.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2337.39
//
Query:       EHT99734.1  [L=233]
Description: glycerophosphoryl diester phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-25   89.3   0.0    1.8e-23   83.6   0.0    2.0  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
  ------ inclusion threshold ------
        0.2   11.2   0.0       0.33   10.5   0.0    1.3  1  PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X do


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0     2e-27   1.8e-23       1     167 [.       7     157 ..       7     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 2e-27
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HRGa++  pEnT  + + A+e+GadyiE+Dv+ + Dgv+ v+HD++ldrtt++ g  +v ++   +++ ld ++++ ++ +++ rv      p+l+ +l
  EHT99734.1   7 HRGANHFAPENTFFAADLALEQGADYIELDVRESADGVLYVIHDETLDRTTNGTG--PVGHALSRDIDALD-AGSWFDERFKDARV------PRLDAYL 96 
                 *******************************************************..**************.88888888888777......9****** PP

                 HH.HHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHT CS
        GDPD 100 kk.pqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrek 167
                 ++     g++ie k+   +++ +  +   v+++ +++d++    ++++   +  ++   pd+ k+++  
  EHT99734.1  97 EHlRGRAGVYIELKYCDPVKVAA--L---VRDLGMVRDTFF---FSFSETMRAGLQAVAPDFRKMMTLN 157
                 *9555556666666644444433..3...334444444444...4444555666666666666666555 PP

>> PI-PLC-X  Phosphatidylinositol-specific phospholipase C, X domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.7e-05      0.33      35      64 ..      25      54 ..      10      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.7e-05
                HHHTT--EEEEEE-...TT.SEEEETTEEE CS
    PI-PLC-X 35 aLlrGcRcvEidvwdgedeepvvlhgytlt 64
                aL++G  ++E+dv++++d+ + v+h  tl 
  EHT99734.1 25 ALEQGADYIELDVRESADGVLYVIHDETLD 54
                89************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1705.63
//
Query:       EHT99735.1  [L=368]
Description: putative ATP-binding component of an ABC superfamily maltose/maltodextrin transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-38  131.5   0.0    4.3e-38  130.9   0.0    1.3  1  ABC_tran         ABC transporter
    7.4e-09   35.7   0.0    1.6e-08   34.6   0.0    1.6  1  TOBE_2           TOBE domain
    1.1e-07   32.5   0.0    3.2e-07   31.1   0.0    1.9  1  OB_MalK          MalK OB fold domain
      3e-05   24.0   1.7     0.0077   16.1   0.2    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00011   21.7   0.3      0.029   13.8   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00043   20.8   0.1    0.00096   19.7   0.1    1.6  1  CysA_C_terminal  CysA C-terminal regulatory domain
     0.0017   18.1   0.0     0.0038   16.9   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
     0.0029   17.5   0.0     0.0048   16.8   0.0    1.3  1  Rad17            Rad17 P-loop domain
  ------ inclusion threshold ------
       0.01   15.4   0.0       0.12   11.9   0.0    2.2  2  AAA_25           AAA domain
      0.062   13.6   0.8       0.23   11.8   0.9    2.0  1  AAA_22           AAA domain
      0.063   13.8   0.0       0.22   12.1   0.0    2.0  2  AAA_18           AAA domain
       0.09   13.2   0.3       0.18   12.2   0.3    1.6  1  AAA_16           AAA ATPase domain
       0.09   13.3   0.0       0.11   13.0   0.0    1.3  1  AAA_23           AAA domain
      0.093   13.0   0.0       0.35   11.1   0.0    1.9  2  AAA_28           AAA domain
      0.099   12.5   0.0       0.22   11.4   0.0    1.6  1  RsgA_GTPase      RsgA GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   3.6e-41   4.3e-38       1     136 [.      19     161 ..      19     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 3.6e-41
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 lk ++l++++ge vai+G++G+GKSt l llagl+ pt+Gei +dg+++++  +   ++++g+++q   l p+ltvren             +  +++e
  EHT99735.1  19 LKPMNLTIENGEFVAILGPSGCGKSTTLFLLAGLYAPTSGEIAFDGHNVNR--IDARDRNVGIVFQSYALYPNLTVRENiafplrfkktgkeHIARRVE 115
                 7899***********************************************..99999****************************99999888888** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +a++ ++++ l d++     s+LSgGq+qrvalaral+k+p++lllDEp 
  EHT99735.1 116 EAANLVQISALLDRRP----SQLSGGQQQRVALARALVKEPNILLLDEPL 161
                 **********999998....*****************************7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.3e-11   1.6e-08       2      76 .]     271     341 ..     270     341 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.3e-11
      TOBE_2   2 aiRPEklrlaaaggan.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 ++RPE++ l   ++++  l G+++ ve +G ++ y++++++g+l +++   a    ++apG++V+++++p+ ++++
  EHT99735.1 271 GLRPEDINLI--AADEaPLCGEIMTVEPMGREVFYTIDTPAGTLRALEYGEAV---RHAPGSRVGVACQPELTLIF 341
                 79*******3..44555***************************888888887...9*************987776 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.7e-10   3.2e-07       1      53 []     235     277 ..     235     277 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.7e-10
     OB_MalK   1 GSPaMNflpatveedgvlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 GSP+MN+++++ + +g ++  g++tl+l+ e           +v +G+RPE+i
  EHT99735.1 235 GSPPMNLVEGQAV-GG-FLHLGQTTLELNHEY--------DGPVCFGLRPEDI 277
                 9************.67.9999999****9988........99**********8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0025         3       1      26 [.      31      61 ..      31     116 .. 0.68
   2 !   16.1   0.2   6.5e-06    0.0077     232     298 ..     129     193 ..      90     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0025
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl.....d 26
                + ++ Gp g+GKS+ L +l +l        +
  EHT99735.1 31 FVAILGPSGCGKSTTLFLLAGLYAPtsgeiA 61
                679*************999998543433331 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.5e-06
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 + +++lS G+++  al+ al   +    +ll+DEp ++L+  l  +  + lk+l++  g   +++TH+
  EHT99735.1 129 RRPSQLSGGQQQRVALARALVKEP---NILLLDEPLSNLDATLRITMRTELKNLQKrLGFTTLIVTHD 193
                 567889***999999999999888...89**********************99999889999999998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0053       6.4      24      39 ..      29      44 ..       4      51 .. 0.84
   2 !   13.8   0.0   2.4e-05     0.029     135     209 ..     105     205 ..      56     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0053
                SSEEEEEESTTSSHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsn 39
                 +f ai+Gp G+GKs 
  EHT99735.1 29 GEFVAILGPSGCGKST 44
                4699**********96 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.4e-05
                 T...........................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE..EEE-SSH.HHCC CS
                 x...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.xxxx RF
       SMC_N 135 e...........................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf..ivislre.emle 203
                 +                           +LSgG+++ vala       vk   + llDe  ++LD++ +  + + lk+ +k+  f  +++++++ e ++
  EHT99735.1 105 TgkehiarrveeaanlvqisalldrrpsQLSGGQQQRVALARA----LVKEPNILLLDEPLSNLDATLRITMRTELKNLQKRLGFttLIVTHDQlEAIT 199
                 04444444444444444444444444449*******9988754....57788899**********************9999966522556655424444 PP

                 C-SCEE CS
                 xxxxxx RF
       SMC_N 204 kadklv 209
                  ad+++
  EHT99735.1 200 MADRII 205
                 555555 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1     8e-07   0.00096       1      42 [.     240     278 ..     240     279 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8e-07
  CysA_C_terminal   1 NlFhGrvedGklriGglalpvPelagadgqevvayVRPhDle 42 
                      Nl +G++ +G l++G+++l++   +++dg +v  ++RP+D+ 
       EHT99735.1 240 NLVEGQAVGGFLHLGQTTLELN--HEYDG-PVCFGLRPEDIN 278
                      9*********************..88866.**********96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.2e-06    0.0038       8      39 ..      12      46 ..       8      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.2e-06
      AAA_29  8 NWgtfdg.htieidlkg..atlltGpsGsGKSTll 39
                NWg+ +  + ++++ ++  ++ + GpsG GKST l
  EHT99735.1 12 NWGETQVlKPMNLTIENgeFVAILGPSGCGKSTTL 46
                99999988888877766689*************76 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     4e-06    0.0048      33      70 ..      17      54 ..       8      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4e-06
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskelg 70
                + lk + L  ++ + + i GPsGCgkst++  L+  ++
  EHT99735.1 17 QVLKPMNLTIENGEFVAILGPSGCGKSTTLFLLAGLYA 54
                55677777777778999*************99987665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.12      30      64 ..      26      62 ..      19      80 .. 0.81
   2 ?    0.8   0.0      0.26   3.1e+02     171     188 ..     175     192 ..     163     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tGkpwl 64
                +  ge++++ G++g+GK+t +  la  +a  +G+  +
  EHT99735.1 26 IENGEFVAILGPSGCGKSTTLFLLAGLYAptSGEIAF 62
                6789*****************9999888876666555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.26
      AAA_25 171 aleriarrtgaavllvhH 188
                  l+++++r+g ++l+v H
  EHT99735.1 175 ELKNLQKRLGFTTLIVTH 192
                 6899*************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   0.00019      0.23       4      29 ..      28      53 ..      25     221 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_22  4 tagilvvtGesGtGKTtllrrlleql 29
                +  ++++ G+sG+GK+t+l  l+  +
  EHT99735.1 28 NGEFVAILGPSGCGKSTTLFLLAGLY 53
                56799************997777665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.22       1      41 [.      32      94 ..      32     184 .. 0.59
   2 ?    0.3   0.0      0.79   9.4e+02       9      44 ..     105     161 ..     102     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf........................gvnlrdvakenglllev 41
                +++ G++G+GK+t    L+ +  +                        g++ +++a   +l   +
  EHT99735.1 32 VAILGPSGCGKSTTLFLLAGL--YaptsgeiafdghnvnridardrnvGIVFQSYALYPNLTVRE 94
                689***************666..233444445564444444444444455555555544444444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.79
      AAA_18   9 vGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe 44 
                 +GK  +a+++++  ++                     +   r ++ke ++ll ++p 
  EHT99735.1 105 TGKEHIARRVEEAANLvqisalldrrpsqlsggqqqrVALARALVKEPNILLLDEPL 161
                 677777777777655566666666666666655555555555555555555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00015      0.18      24      45 ..      29      50 ..      17     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
      AAA_16 24 pelvllsGesGvGKsslvrell 45
                +e v + G+sG+GKs+ +  l+
  EHT99735.1 29 GEFVAILGPSGCGKSTTLFLLA 50
                4899************986665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.2e-05      0.11      18      65 ..      28      74 ..       3     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
      AAA_23 18 skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdvei 65
                +  +++I Gp G+GK+T l ++  +Ly  t+++   +g + ++ d + 
  EHT99735.1 28 NGEFVAILGPSGCGKSTTL-FLLAGLYAPTSGEIAFDGHNVNRIDARD 74
                456889***********99.7778888877777666666666666653 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.35       2      30 ..      32      60 ..      31      73 .. 0.85
   2 ?   -1.2   0.0       1.8   2.1e+03     133     156 ..     168     191 ..     128     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
      AAA_28  2 ivitGgestGKTtlleaLaargypvvpEa 30
                ++i+G++++GK+t+l  La    p+  E+
  EHT99735.1 32 VAILGPSGCGKSTTLFLLAGLYAPTSGEI 60
                89*************99997766666555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
      AAA_28 133 ereaiderlrealrelgipviivp 156
                  r  + + l+++ ++lg+  +iv 
  EHT99735.1 168 LRITMRTELKNLQKRLGFTTLIVT 191
                 567778888888888888888884 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.22      89     121 ..      18      51 ..       2      66 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   l+ ++  +++ ++++++G+SG GKSt +  l++
   EHT99735.1  18 VLKPMNLTIENgEFVAILGPSGCGKSTTLFLLAG 51 
                  55556666777699*************8877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2714.34
//
Query:       EHT99736.1  [L=354]
Description: putative permease component of an ABC superfamily sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-07   31.0  38.9    0.00017   21.4  38.9    2.9  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4  38.9   9.4e-09   0.00017      20     176 ..     184     340 ..      22     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.4e-09
  BPD_transp_1  20 lrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglil 116
                   +++   +l ++P ++l i ++  +  + +l ++ ++v++++    +py++++ +++++++p d +  a ++Ga+r+q fr vvlP++ + +i+ + +
    EHT99736.1 184 FLRGLLLLHAFPALALTIAIFIQLHYM-GLLNHLFGVVMVMSALELPYAIFVLKGFFDAVPWDIEMSAVTDGATRFQAFRMVVLPQVRSGLIAIATF 279
                   444445678899999666666444444.555666778888888899*************************************************** PP

  BPD_transp_1 117 afggllggavlleflgswpG.lgtllleailgydyseisnggvlalviavlllnlvadilq 176
                   +f + + ++v++ +l+ ++  +++ l  +  ++d + + +g+++a++i++ll +lv++ ++
    EHT99736.1 280 TFLRGWEEYVFVQTLLIDKSqMTMSLYLFFVAQDNTGADYGMIAAVGIIYLLPVLVLYTFT 340
                   *************999665456666666666666665556666666666666555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2752.57
//
Query:       EHT99737.1  [L=289]
Description: binding-protein-dependent transport systems inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-12   47.4  13.0    1.8e-12   47.4  13.0    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   2.7    0.0072   1.3e+02      52     110 ..       3      61 ..       2      72 .. 0.76
   2 !   47.4  13.0   9.8e-17   1.8e-12       2     169 ..      74     266 ..      73     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0072
  BPD_transp_1  52 lilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppi 110
                   +  p+i+ll++++++++++++  a+  +  dl+    +l   ++ ++r  ++P++l ++
    EHT99737.1   3 YLAPAIALLAVFFLAPIIVNTVIAFTDMGADLRVGHFTLQNVERIVLRDARMPAVLLTT 61 
                   56789999999999999999999999999998877777776666667777777666655 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 9.8e-17
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilp.viillllsaapyvrlirraalr 77 
                   ++lG+l+a   ++   +l +l+r+l  ++++ P ++  il+++v+                  +++   +  l  +i++  l  a ++++i  + +r
    EHT99737.1  74 VGLGVLLAittTAIPDRLGNLFRGLWLLPRMSPAVLYSILWIWVAdptpsgllnqvtgsfglPLMNLRNDFPLFlIIVANGLVGASFAMVILTSSIR 170
                   688999999999******************************999****************966666666777768888899999999999999*** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavllln 169
                   s+p  l +aar++Gas+w ++r+vv P++  pi    i++  +ll+ +  ++++++++++ + +  a+ +y  ++ +    +g++lal+++v+ + 
    EHT99737.1 171 SIPAHLANAARVDGASEWGVLRYVVAPALSQPIRFITIYQGLSLLTTYEYILLITGGGPVYDSTPYALYIYRRAFENgayaYGAALALGLMVIGVG 266
                   ***********************************************9999999999887777777777777777775555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2142.35
//
Query:       EHT99738.1  [L=458]
Description: periplasmic substrate-binding component of an ABC superfamily sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-27   96.8  17.2    3.3e-27   96.3  17.2    1.1  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3  17.2   1.8e-31   3.3e-27      15     309 ..      53     357 ..      44     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.8e-31
                 HHHHHHHHTTEEEEEEEE.....CHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE. CS
   SBP_bac_1  15 akafekehpgikVeiesv.....gsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv. 106
                 +k+f++++ +  ++i+       g++++a  + +a++ G+gp D+    + wi+++ak g+++ +++ ++a   p+        +++ lp  ++s k  
  EHT99738.1  53 NKQFKAAGVDKHIVIQANssavkGWDDFAMDMLKAMSVGQGP-DIYVLPHEWIGQFAKDGYAMQMNDKIAAA--PW-------VYGDILPVLWASaKAn 141
                 467999999999999999999999999999************.**********************9999887..22.......3456777777754445 PP

                 ...ES.EEEEE.EEEEEEETTTHHCTTGGG.............SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTH CS
   SBP_bac_1 107 ...ly.vPlya.argliYNkdlfekagldp.............pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdggg 187
                    +y +P++a  r+++YNkd + k g d+              +t d+l+++ak++++   +     +g+ +  + ++++l +++s+g+k++d++ g+
  EHT99738.1 142 dgkIYgIPQDAeIRMFFYNKDMLRKIGKDEafinaiparvesgDFTLDDLTALAKEVVDGKAAQ----YGMLHRPNVGIDYLMVFQSYGVKFMDDKTGK 236
                 89********77************6665556666688888889****************99999....9999999999********************9 PP

                 HCSHHHHS..HHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH........TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBE CS
   SBP_bac_1 188 ldnpegvt..aatylvklyavanltkelkgkgaenkdgaaalalfe........aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPag 276
                 l++p+++   a+++++        +++ ++++ +  +++a +++f+        +G +a+          ++  ++++ +++dke++  ++g++p Pa 
  EHT99738.1 237 LIFPKAEMadALGWYERNA-----KQGVTPVDNTAMSWDAIQNAFKqekafifhQGVWAV--------AWQLGDKNGAVWPTDKEGYFHKIGWIPAPAA 322
                 9999999988999998888.....99*******************944444444444444........44455679999999999999*********** PP

                 TTTTSEE..EEEEEEEEBTTCSTHHHHHHHHHHHT CS
   SBP_bac_1 277 kggkpgi..lgayglaipkgsknpeaAkkFldfll 309
                 k+g+ ++       ++++++skn + A +++++++
  EHT99738.1 323 KKGGQPSnlSHPLLYTVNAKSKNADIAAELVALAT 357
                 *******9999999*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3258.15
//
Query:       EHT99739.1  [L=385]
Description: putative transcriptional regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-24   85.3   0.0    5.1e-22   78.7   0.0    2.1  2  ROK        ROK family
    5.8e-08   32.5   0.5    1.9e-07   30.9   0.2    2.0  2  MarR_2     MarR family
    4.2e-05   23.0   0.0    7.5e-05   22.2   0.0    1.4  1  HTH_24     Winged helix-turn-helix DNA-binding
    0.00047   20.1   0.1      0.002   18.1   0.1    2.1  2  HTH_Crp_2  Crp-like helix-turn-helix domain
    0.00081   19.3   0.0     0.0018   18.2   0.0    1.5  1  MarR       MarR family
     0.0032   17.5   0.1     0.0062   16.6   0.1    1.5  1  HTH_20     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.7   0.0       0.17   12.4   0.0    2.5  3  HTH_27     Winged helix DNA-binding domain
       0.02   14.7   0.0      0.067   13.0   0.0    1.9  1  HTH_IclR   IclR helix-turn-helix domain
       0.11   12.7   0.0       0.22   11.8   0.0    1.4  1  HTH_34     Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.5e-25   5.1e-22      11     156 ..      92     241 ..      82     263 .. 0.84
   2 !    4.9   0.0     0.008        16     207     292 ..     283     370 ..     261     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 2.5e-25
                 EEEEEEETTS-EEEEEEE...EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGC.GCCCCTTHHHHHHHHHTS-EEEEEH CS
         ROK  11 ialalvdeegeilarekv...etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpn.itwenfdlvekleerlnvpvevenD 105
                 ++l+l+d +g+ +++ ++     +    +  +++  ++l+++ +   + li+ gi++p   ++++  ++ +p+ + w++ +l e+++++l++pv +enD
  EHT99739.1  92 VTLMLLDFKGKRVDEIELtghYDTFARARSEIQKGHKTLLERNHIPDHLLIGAGIAMPTRFQRGQAPLHLAPEvLSWDESGLFEAIQQALGCPVLIEND 190
                 5556666666666666653333344445566777777888877776777899********************98999********************** PP

                 HHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GG CS
         ROK 106 vnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelG 156
                 +naaa++E  +g++++++++iy++++ GvG G i++ + ++G+ G+age+G
  EHT99739.1 191 ANAAAMGEMTLGNAANHDDFIYLYLSEGVGSGLILGKQRYRGHLGNAGEIG 241
                 **************************************************9 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.008
                 T-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTS..TTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHHC CS
         ROK 207 gdevaeevverlaeylakaiadlinlfdpqaivlgGgvsea..dklleairklvkkylnkklevpvveivaaklgdkagllGaaaLak 292
                 +  v  e + r +  +a++   l ++++p ai lgG + ++  ++l + +  ++   ln+ + v++ + ++  +  +  + Gaaa++ 
  EHT99739.1 283 NTAVLDEWIARTGPEIARLGFMLNAVLAPAAIYLGGTLPQMvrERLAAWLDFSTVDTLNGTPVVQPEICLPDVAATDTVAFGAAAMVL 370
                 455556778888999999999****************96543277779999999************99999999999*******9986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   9.3e-11   1.9e-07       2      54 ..       9      59 ..       8      67 .. 0.87
   2 ?   -2.8   0.0         3   5.9e+03       6      18 ..     365     377 ..     364     378 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 9.3e-11
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                g+  +q  vL +L+r++    + +e+a+ +g++ +avs + ++L ++G + + 
  EHT99739.1  9 GIGTTQSAVLRYLRRNDA--ASRAEIADCCGVTAAAVSMMTRDLIKRGIIIEG 59
                56679************9..9****************************9654 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
                 HHHHHHHHHHCTT CS
      MarR_2   6 aqarvLaaLgrrp 18 
                 a a+vL++++  +
  EHT99739.1 365 AAAMVLHNVAQQD 377
                 6799****99876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.7e-08   7.5e-05       4      47 ..      13      56 ..      12      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.7e-08
      HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                t+ ++L++L++n   s +e+A+ +g++ ++v+   + L++ G+I
  EHT99739.1 13 TQSAVLRYLRRNDAASRAEIADCCGVTAAAVSMMTRDLIKRGII 56
                56689**************************************9 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   9.9e-07     0.002      22      54 ..      27      59 ..      10      65 .. 0.88
   2 ?   -2.8   0.0       3.3   6.5e+03       1       7 [.     326     332 ..     326     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.9e-07
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisrg 54
                 +++e+A+++G+t   vs + ++L ++g+i  g
  EHT99739.1 27 ASRAEIADCCGVTAAAVSMMTRDLIKRGIIIEG 59
                699**************************9754 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
                 HHHHHHH CS
   HTH_Crp_2   1 qRlArfL 7  
                 +RlA++L
  EHT99739.1 326 ERLAAWL 332
                 79***99 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.8e-07    0.0018       4      47 ..      13      56 ..      11      63 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.8e-07
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                tq  +Lr l++++++s +e+a+  gv+ ++v+ +++ L+k+G i
  EHT99739.1 13 TQSAVLRYLRRNDAASRAEIADCCGVTAAAVSMMTRDLIKRGII 56
                7889**************************************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.1e-06    0.0062      11      56 ..      13      59 ..      12      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT.EEE CS
      HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagL.vev 56
                ++ ++lr+L+r+++++ +e+a++++++ + +s   r L + g+ +e+
  EHT99739.1 13 TQSAVLRYLRRNDAASRAEIADCCGVTAAAVSMMTRDLIKRGIiIEG 59
                6789*************************999877777777775555 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.3e-05      0.17       3      50 ..      12      58 ..      10      71 .. 0.85
   2 ?   -2.4   0.0       3.5   6.9e+03      18      36 ..     295     313 ..     291     316 .. 0.78
   3 ?   -0.3   0.0      0.81   1.6e+03       6      17 ..     367     378 ..     364     383 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
      HTH_27  3 rqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLver 50
                + q++vL+ +r r++ ++ a++++   v+++++s + + L+++G + +
  EHT99739.1 12 TTQSAVLRYLR-RNDAASRAEIADCCGVTAAAVSMMTRDLIKRGIIIE 58
                5699*******.9999999*************************8833 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
      HTH_27  18 rkkladlcgrlnvedshis 36 
                 + ++a+l ++ln   ++++
  EHT99739.1 295 GPEIARLGFMLNAVLAPAA 313
                 67899******99888776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.81
      HTH_27   6 alvLhlirhrrr 17 
                 a+vLh+++ +++
  EHT99739.1 367 AMVLHNVAQQDN 378
                 89*****94443 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.4e-05     0.067       7      47 ..      16      55 ..      15      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                a+L++l++ + + + +e+A+ +g++ ++v+ +++ L+++G+
  EHT99739.1 16 AVLRYLRRNDAA-SRAEIADCCGVTAAAVSMMTRDLIKRGI 55
                79*********8.9************************997 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.22       4      44 ..      16      56 ..      14      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
      HTH_34  4 avlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYi 44
                avl yL  +d a+ +e+ ++ ++t+++ s  ++ L k g i
  EHT99739.1 16 AVLRYLRRNDAASRAEIADCCGVTAAAVSMMTRDLIKRGII 56
                79**********************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2923.26
//
Query:       EHT99740.1  [L=169]
Description: hypothetical protein CKS_3644 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-10   40.2   0.2    3.8e-10   39.9   0.2    1.1  1  RES       RES domain


Domain annotation for each model (and alignments):
>> RES  RES domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   2.1e-14   3.8e-10      18     152 ..      18     151 ..       4     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.1e-14
         RES  18 g.pgaaagggRfnsagigvlYaAssvatAlaEvlvhrgrfldataglplllprdlrlldlevpdarlvdldrgaalerlp....k....wadpas..dy 105
                   ++++ ++gR+++ g ++lY +  ++ +++ v  +++ +            + ++l+ l+++ a lvd +++a+ e+l+         w++  +    
  EHT99740.1  18 LaAPGPQSAGRYHRHGQPALYMSPLPEWSIMAVSGYMREDG-----------LSRVLIPLRLSGAWLVDQRDRAKCEQLGilpeAadgsWRTALQqgRI 105
                 23588999*************************98766444...........44555555555999999843666666665534134578887663344 PP

         RES 106 satqaiadalraagidGilypSarddpggrnlvlfddahpdaarvea 152
                 + ++  ad +ra ++dGi+ +S+   pgg+ ++lf +++p+a rv++
  EHT99740.1 106 PDSWHNADKARATDADGIIDRSRLI-PGGWHICLFQWNTPSAPRVAV 151
                 477777888888889********86.****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1240.59
//
Query:       EHT99741.1  [L=109]
Description: hypothetical protein CKS_3642 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0033   17.2   0.0     0.0048   16.7   0.0    1.3  1  STN       Secretin and TonB N terminus short domain


Domain annotation for each model (and alignments):
>> STN  Secretin and TonB N terminus short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.7e-07    0.0048      13      50 ..      71     108 ..      64     109 .] 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-07
         STN  13 nqtvslnignvtideaLdeLLkgtgLqyki.tgntiris 50 
                  q++ +  g +t+ eaL +  kgt+L ++  t ++i+++
  EHT99741.1  71 VQVNPVE-GTMTLREALGQAIKGTPLKIVAqTPDVITVE 108
                 5777888.999**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 884.47
//
Query:       EHT99742.1  [L=79]
Description: hypothetical protein CKS_3641 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00088   19.2   0.2     0.0014   18.6   0.2    1.5  1  DUF2767   Protein of unknown function (DUF2767)


Domain annotation for each model (and alignments):
>> DUF2767  Protein of unknown function (DUF2767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   7.6e-08    0.0014      12      39 ..      13      40 ..       1      67 [. 0.74

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.6e-08
     DUF2767 12 dEvCRvvGdvVlvlaelGqetkriviad 39
                dEvC ++G++V++l ++ q   +  +a 
  EHT99742.1 13 DEVCCIIGQAVIELSAEQQPVTKSTLAL 40
                8**************9998877777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 696.94
//
Query:       EHT99743.1  [L=406]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-30  104.6  47.6    3.6e-17   62.3  21.3    2.1  2  MFS_1     Major Facilitator Superfamily
     0.0003   19.8   3.6     0.0003   19.8   3.6    2.9  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        9.9    5.9   8.2        1.1    9.1   1.1    2.5  2  DUF443    Protein of unknown function (DUF443)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3  21.3     6e-21   3.6e-17      13     225 ..      30     233 ..      16     239 .. 0.80
   2 !   46.3  23.0   4.5e-16   2.7e-12       9     176 ..     228     394 ..     222     405 .. 0.77

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6e-21
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgagalfpagaal 109
                   +++++   la+ l + +s+i + ++l +lg a++s ++G l +rfG r+v + + +l+alg l l+ +  +l  l l + vl Gl+ ga++ + ++ 
  EHT99743.1  30 VYTWSLFNGQLAQKLDAPVSQIAFSFGLLSLGLAISSSLAGKLQERFGVRKVTIGAGILMALG-LGLTAHaDNLImLYLSAGVLLGLADGAGYLMTLSN 127
                 3344444447899999***********************************************.77773248888889999****************** PP

       MFS_1 110 iadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpv 208
                  ++wfp+ ++g+  +++ ++++lG++    + g+l++ +g + +f++ +++++ +++ ++l +++ p +++  +++e       ++ +   ++++ ++ 
  EHT99743.1 128 CVKWFPE-RKGMISACAIGAYGLGSLGFKFICGALLARFGLEQTFVLWGLLAMAMIIAGGLMMRDAPLQSASATQAEA-----TRQYTL-AESVRLPQ- 218
                 ******9.*****************777666666666******************99666666666555555555555.....555555.57788777. PP

       MFS_1 209 lwillialllfffgfsg 225
                  w+l +++l++  ++sg
  EHT99743.1 219 YWMLALMFLTA--CMSG 233
                 77677777666..4444 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 4.5e-16
       MFS_1   9 alarsilgpalpl.alaed.lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgagalf 103
                 ++ +s l+++     ++e   ++s +++  ++t+ a++ + + l+lG+lsd++ r rv+ l+ l++++g+ l+lf+      +++++ +  ++  g+ +
  EHT99743.1 228 TACMSGLYVIGVAkDIGEGlVHLSTQTAANAVTVIAVANLSGRLVLGVLSDKMVRIRVISLAQLVSLIGMSLMLFTqM-NQtTFFLSLACIAFSFGGTI 325
                 333333333333224433334599999999**********************96777************666667642.333688888888888899** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 ++  +l++d f  ++ ++ +gl+++gf++G+++g l+++l+    g++++f ++  ++++++vl  l ++ ++
  EHT99743.1 326 TVFPSLVSDFFGLNNLTKNYGLIYLGFGIGSVMGSLVASLFG---GFTVTFSLIMTLLVISLVL-SLTIRLPQ 394
                 ******************************************...****************885.23333333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   3.6     5e-08    0.0003      20     122 ..      19     123 ..      15     128 .. 0.80
   2 !    6.9  14.8    0.0004       2.4      43     166 ..     242     375 ..     191     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5e-08
                 GGTHHHHHHHHTSTT--SHHHHHH.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHH CS
    Sugar_tr  20 gafltllkfaknfglsksksskee....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGi 114
                 g+++t+l+  + +++s  +++ ++      +++ ++++++++G +i+s +ag+l +rfG +k+ + a++l+  g  l+a a+  n + +++ + vl+G+
  EHT99743.1  19 GTVITQLALGSVYTWSLFNGQLAQkldaPVSQIAFSFGLLSLGLAISSSLAGKLQERFGVRKVTIGAGILMALGLGLTAHAD--NLIMLYLSAGVLLGL 115
                 55555555555555555555555566668899**************************************************..3355555569999*9 PP

                 HHHHHHHH CS
    Sugar_tr 115 gvGlasvl 122
                 + G+ + +
  EHT99743.1 116 ADGAGYLM 123
                 99988765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0004
                 H...........HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.. CS
    Sugar_tr  43 e........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA.. 131
                 +        s+ +    v +  v  + G l++g l+d++ R  ++  a ++++ig  l+ +++   +   ++++   + ++ G++ ++ P ++s +   
  EHT99743.1 242 DigeglvhlSTQTAANAVTVIAVANLSGRLVLGVLSDKMVRIRVISLAQLVSLIGMSLMLFTQ--MNQTTFFLSLACIAFSFGGTITVFPSLVSDFFgl 338
                 05555555556666788999999****************************************..67889999999*******************9766 PP

                 ..-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS- CS
    Sugar_tr 132 ..pkklRgalvslyqlaitfGilvaaifglglnktsn 166
                    +k  g +   +  + ++G lva+ fg ++ ++s 
  EHT99743.1 339 nnLTKNYGLIYLGFGIGSVMGSLVASLFGGFTVTFSL 375
                 556666788888899999********99988888776 PP

>> DUF443  Protein of unknown function (DUF443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.0      0.12     7e+02      73     102 ..     271     300 ..     218     330 .. 0.58
   2 ?    9.1   1.1   0.00018       1.1      59     108 ..     342     391 ..     336     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
      DUF443  73 vllgnllrklidvfniqlsklvnliilliv 102
                 ++lg+l  k++ +  i l +lv li + ++
  EHT99743.1 271 LVLGVLSDKMVRIRVISLAQLVSLIGMSLM 300
                 444444444444444444444443332222 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00018
      DUF443  59 akkksigllalGsavllgnllrklidvfniqlsklvnliillivlllvlv 108
                 +k+    +l++G++ ++g+l+++l   f +  s ++ l+++ +vl+l++ 
  EHT99743.1 342 TKNYGLIYLGFGIGSVMGSLVASLFGGFTVTFSLIMTLLVISLVLSLTIR 391
                 5677778999999*****************99988888877777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.35
# Mc/sec: 3491.28
//
Query:       EHT99744.1  [L=291]
Description: hypothetical protein CKS_3638 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-74  250.8   0.0    1.6e-74  250.6   0.0    1.0  1  SGL       SMP-30/Gluconolactonase/LRE-like region


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.6   0.0   9.1e-79   1.6e-74       1     245 [.      15     256 ..      15     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.6 bits;  conditional E-value: 9.1e-79
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpesvGaiaprkdgrlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGrl 99 
                 l+E+p+w  +e+ L++vDil+  ihr+dpa+g+ +++++ e+vG+i +r++g++++a++sg++lld + +  ++++d++ +   + rfNDg+vdp+G++
  EHT99744.1  15 LAECPLWAVQEQVLWCVDILAPAIHRFDPASGELSTFPQAEEVGCIGLREQGGIIAALRSGVWLLDEQGKPQKKVVDNP-GIAGKSRFNDGRVDPWGNF 112
                 79**********************************************999**************989999999***97.5559*************** PP

         SGL 100 wfGtmgdeeakgeevgalyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvw 198
                 w+G++++ ++k+   g l r++pd +le+ ++d++i+NG+a+spd + +Y+ D++++ +++y++da+g+  ++r+ f +++  +g pDG+avD+eG++w
  EHT99744.1 113 WCGSLWEPQDKNG--GLLCRVTPDLTLEVKARDIKISNGVAFSPDRQWMYHSDTPNEVLYRYPLDAQGE-PGQREIFRRFDARGGLPDGAAVDSEGYYW 208
                 ************9..**************************************************9999.***************************** PP

         SGL 199 vAvwgggkvvrfdpd.GklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 +A+++gg+vvr+dp+ G++++ei+lp+k++t+++FgG+dl+tL+its+
  EHT99744.1 209 SALFDGGRVVRIDPHdGEIVDEITLPVKWPTMVTFGGSDLKTLFITSS 256
                 **************99******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2331.15
//
Query:       EHT99745.1  [L=42]
Description: hypothetical protein CKS_3637 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       123  (0.00686039); expected 358.6 (0.02)
Passed bias filter:                       98  (0.005466); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 360.41
//
Query:       EHT99746.1  [L=93]
Description: hypothetical protein CKS_3636 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.51   10.9   2.9       0.74   10.4   2.9    1.3  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.9   4.2e-05      0.74       1      18 []       1      18 [.       1      18 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.2e-05
      LPAM_1  1 MKKillalgalllLsGCs 18
                MK  ++ ++al  LsGC+
  EHT99746.1  1 MKMAIMGAFALIFLSGCT 18
                555599***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 784.40
//
Query:       EHT99747.1  [L=110]
Description: hypothetical protein CKS_3635 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 854.04
//
Query:       EHT99748.1  [L=153]
Description: hypothetical protein CKS_3634 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.021   14.5   2.4      0.026   14.2   2.4    1.2  1  DUF4131          Domain of unknown function (DUF4131)
       0.03   13.3   3.2      0.036   13.1   3.2    1.1  1  PalH             PalH/RIM21
      0.031   12.6   0.8      0.036   12.4   0.8    1.1  1  DUF2070          Predicted membrane protein (DUF2070)
      0.045   13.0   0.3      0.047   13.0   0.3    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
       0.22   11.4   0.2       0.22   11.4   0.2    2.2  2  YajC             Preprotein translocase subunit
       0.42   10.6   3.3        0.6   10.1   3.3    1.2  1  DUF3043          Protein of unknown function (DUF3043)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.4   8.5e-06     0.026       3      76 ..       7      75 ..       2     110 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.5e-06
     DUF4131  3 lplalvllalllllllllllllrr...rprrrvllllllllllallgfalrapqpna.ndlsqlles..gqeviveGvva 76
                l+la+++l+++++++l++         + ++ v l++l lll  +l+f + +pq+++ +++++++++  +      ++v 
  EHT99748.1  7 LTLAAFVLLAIIIVMLVR-----TtrlKAWQGVVLFILPLLLSNVLWFSWIQPQQQQeKRYERAADYmaQ------ATVY 75
                223333333333333333.....24444444444444445555555555555555551444444444433......3333 PP

>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.2   1.2e-05     0.036     249     311 ..       1      64 [.       1      66 [. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
        PalH 249 tilllilnllvillpvvffildisnadvaewkeliiwvlkllitvivW.ewierieklerkeek 311
                 + lll+l+l++++l  +++++ + +  +  w+ ++  +l ll++ + W  wi+  ++ e+++e+
  EHT99748.1   1 MTLLLFLTLAAFVLLAIIIVMLVRTTRLKAWQGVVLFILPLLLSNVLWfSWIQPQQQQEKRYER 64 
                 789***************************************99999967***99999999887 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   1.2e-05     0.036      17      72 ..       8      66 ..       4      94 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
     DUF2070 17 sllliillalligllaflssk..lfgillfglpalvaflltlpvlrilggr.ltykrsl 72
                +l++ +lla++i +l+ + +   ++g++lf+lp+l++ +l   +++  +++   y+r++
  EHT99748.1  8 TLAAFVLLAIIIVMLVRTTRLkaWQGVVLFILPLLLSNVLWFSWIQPQQQQeKRYERAA 66
                45556666666666555555589*****************9999988777777777764 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   1.6e-05     0.047     168     247 ..       2      80 ..       1     114 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
  ABC2_membrane_2 168 svlllllv.vflalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntlln 247
                      ++ll+l++ +f+ l++ + +++r++r  a   ++lf++ ++l++++ + ++++ +  +    ++   +++  + +y++l+ 
       EHT99748.1   2 TLLLFLTLaAFVLLAIIIVMLVRTTRLKAWQGVVLFILPLLLSNVLWFSWIQPQQQQEK--RYERAADYMAQATVYRVLRT 80 
                      56677766778899999999*********************************997766..66666666666666666655 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.9      0.23     7e+02       7      21 ..      12      26 ..       3      32 .. 0.59
   2 ?   11.4   0.2   7.5e-05      0.22       3      30 ..      37      64 ..      34      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
        YajC  7 vlifvifyfllirpq 21
                +++++i++++l+r  
  EHT99748.1 12 FVLLAIIIVMLVRTT 26
                344556666666654 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.5e-05
        YajC  3 llplvlifvifyfllirpqqkkqkehke 30
                +++ +l+  +++f  i pqq+++k+ + 
  EHT99748.1 37 FILPLLLSNVLWFSWIQPQQQQEKRYER 64
                44455667899*************9876 PP

>> DUF3043  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.3    0.0002       0.6      81     155 ..       5      81 ..       1      88 [. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0002
     DUF3043  81 lflplalvvlvlllv.slvkvpevqavvsllllvllllvvidgillgrkvkkkvrekFp.etesekglglYavsRal 155
                 lfl la +vl+++++ +lv++++++a+  ++l++l ll+    ++ + + +++ ++++   ++ + + ++Y v R+ 
  EHT99748.1   5 LFLTLAAFVLLAIIIvMLVRTTRLKAWQGVVLFILPLLLSNVLWFSWIQPQQQQEKRYErAADYMAQATVYRVLRTQ 81 
                 4555555555553444788999999999999999888888889999*************999999999***999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1370  (0.0764125); expected 358.6 (0.02)
Passed bias filter:                      841  (0.0469072); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 1318.81
//
Query:       EHT99749.1  [L=150]
Description: universal stress protein family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-27   96.4   1.2    2.2e-27   96.3   1.2    1.0  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   1.2   1.2e-31   2.2e-27       1     139 [.       1     145 [.       1     148 [. 0.96

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.2e-31
                 S-SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.......HHHHHHCTTCEEEEEEEESSHH CS
         Usp   1 mykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.......akaaaeaggvkvevvveegdpa 92 
                 m k++l a+D+s+ +kk++   +e+a+a++a++i+l +idp  s+ +   d +a+e++++  +a+ e++        a a + ++g+k +  ++ g++a
  EHT99749.1   1 M-KTVLMAIDNSPVAKKVVSLTIEEAQAHDAQVIVLCCIDPAYSSCSQPIDIDAGEDPADFVAAQDEQNTaemvvrhALAPLLQAGIKARGMILAGEAA 98 
                 5.99**********************************************9999999999888888877789*************************** PP

                 HHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEE CS
         Usp  93 eeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlv 139
                 e+i+   ++++a++i++G+r++s + rll GSvs +v+++a+cpVl+
  EHT99749.1  99 ETIVAQSQQLNASMIIMGRRHLSPFNRLLKGSVSAAVVERAHCPVLI 145
                 **********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1117.11
//
Query:       EHT99750.1  [L=261]
Description: IclR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-19   69.0   0.1    7.2e-19   67.9   0.0    1.6  2  IclR           Bacterial transcriptional regulator
    9.7e-14   50.9   0.1    2.4e-13   49.7   0.1    1.7  1  HTH_IclR       IclR helix-turn-helix domain
    2.8e-08   33.5   0.3    8.5e-08   32.0   0.3    1.8  1  MarR_2         MarR family
    1.6e-06   27.5   0.0    3.3e-06   26.5   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
    5.9e-06   26.6   0.2    1.3e-05   25.5   0.2    1.6  1  Rrf2           Transcriptional regulator
    6.3e-05   22.9   0.2    0.00019   21.4   0.1    1.8  2  HTH_20         Helix-turn-helix domain
     0.0011   18.8   0.0     0.0023   17.8   0.0    1.6  1  TrmB           Sugar-specific transcriptional regulator TrmB
     0.0024   17.6   0.0     0.0077   16.0   0.0    1.9  1  HTH_23         Homeodomain-like domain
     0.0028   17.5   0.3      0.013   15.4   0.0    2.2  2  HTH_5          Bacterial regulatory protein, arsR family
      0.004   17.0   0.2      0.012   15.4   0.0    1.9  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0046   16.9   0.0      0.011   15.7   0.0    1.6  1  MarR           MarR family
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.052   13.7   0.0    1.6  1  HTH_28         Helix-turn-helix domain
      0.037   14.0   0.0       0.37   10.8   0.0    2.3  2  HTH_11         HTH domain
      0.038   14.0   0.0       0.17   11.9   0.0    1.9  2  HTH_Mga        M protein trans-acting positive regulator (MGA
      0.053   13.0   0.0       0.21   11.2   0.0    2.0  1  Sigma70_r4     Sigma-70, region 4
      0.054   13.5   0.1       0.28   11.2   0.0    2.1  2  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.065   12.8   0.0       0.14   11.8   0.0    1.5  1  HTH_47         winged helix-turn-helix
        0.1   12.4   0.0        0.4   10.5   0.0    2.0  2  HTH_38         Helix-turn-helix domain
       0.11   12.5   0.0       0.69   10.0   0.0    2.3  2  HTH_3          Helix-turn-helix


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.9   5.6e+03      79      98 ..      18      37 ..       5      58 .. 0.66
   2 !   67.9   0.0   7.7e-22   7.2e-19       2     113 ..     130     238 ..     129     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
                EEEEEEEEE-TTSSEEEEEE CS
        IclR 79 vrciAapifdasgevvaAvs 98
                v++ Aa i +a ge  ++ s
  EHT99750.1 18 VIARAAKILNALGEHPGGMS 37
                33445666666666555554 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 7.7e-22
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                 +lr+v +iG +lply+t+ G+alLa +++e++++l+    + +lt++T++++++Lle L +vRe+ +++dr+E+ egv+ +A  +   +g+   Avs+ 
  EHT99750.1 130 ELRVVPRIGLELPLYSTSGGRALLALESDEDVRTLVGD-AWRELTDKTVKTQAALLEMLREVRETSISYDRGETLEGVSTMAFALDTLFGR--FAVSLL 225
                 5788899********************99999999988.9******************************************999887887..699*** PP

                 EETTTSHHHHHHH CS
        IclR 101 gptarlteeelke 113
                 +ptar+++ e ++
  EHT99750.1 226 VPTARFKKHESRY 238
                 *******999887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   2.5e-16   2.4e-13       2      50 ..      19      67 ..      18      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.5e-16
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                ++Ra+ iL+al+e+p++++l e+A++ +lp+Stv R+++ L    +v+ 
  EHT99750.1 19 IARAAKILNALGEHPGGMSLGEIAHAVDLPRSTVQRIVAALDSAELVRS 67
                79***************************************99999886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.3     9e-11   8.5e-08       8      54 ..      23      68 ..      19      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 9e-11
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                a +L+aLg +pg+ ++ ge+a + +l++s+v+ri++ L +a Lv+ +
  EHT99750.1 23 AKILNALGEHPGG-MSLGEIAHAVDLPRSTVQRIVAALDSAELVRSS 68
                679*********9.9*****************************876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.5e-09   3.3e-06       7      48 .]      24      66 ..      23      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.5e-09
      HTH_24  7 kILelLqknpr.isqreLAerlglSpstvnrrlkrLeeeGlIk 48
                kIL++L ++p+ +s  e+A +++l++stv r +  L +++l++
  EHT99750.1 24 KILNALGEHPGgMSLGEIAHAVDLPRSTVQRIVAALDSAELVR 66
                8***********************************9999986 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   1.4e-08   1.3e-05       9      67 ..      21      75 ..      17      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEE CS
        Rrf2  9 yalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrL 67
                 a ++l  L +++++  +s+ eia+ +++++s +++i+a L  a+lv+s  G+ GG+rL
  EHT99750.1 21 RAAKILNALGEHPGG--MSLGEIAHAVDLPRSTVQRIVAALDSAELVRSS-GA-GGLRL 75
                58899999*****96..7******************************95.88.88887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.1e-07   0.00019      14      57 ..      24      68 ..      22      71 .. 0.92
   2 ?   -2.8   0.0       7.4     7e+03      11      20 ..     179     188 ..     178     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.1e-07
                HHHHHH.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 14 rilraL.araegltaselaerldlskntlsyHLrvLeeagLvevv 57
                +il aL   ++g++++e+a+++dl+++t+ + +++L +a+Lv++ 
  EHT99750.1 24 KILNALgEHPGGMSLGEIAHAVDLPRSTVQRIVAALDSAELVRSS 68
                7899999999**************************99****975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.4
                 HHHHHHHHHS CS
      HTH_20  11 vRrrilraLa 20 
                 +++++l +L+
  EHT99750.1 179 TQAALLEMLR 188
                 6777888882 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-06    0.0023      21      55 ..      34      68 ..      23      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-06
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVere 55
                g ++  eia+++++prs+v++++  L ++ lV+ +
  EHT99750.1 34 GGMSLGEIAHAVDLPRSTVQRIVAALDSAELVRSS 68
                567788**************************865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.1e-06    0.0077       8      41 ..      23      59 ..      17      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.1e-06
      HTH_23  8 lrillllae...GlsvreIAreLgvsrrTvyrwlkry 41
                ++il +l e   G+s  eIA + + +r+Tv+r++ + 
  EHT99750.1 23 AKILNALGEhpgGMSLGEIAHAVDLPRSTVQRIVAAL 59
                345555557899*********************9885 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.013       6      46 ..      24      66 ..      21      67 .. 0.92
   2 ?   -1.3   0.0       2.3   2.1e+03       3      18 ..     179     195 ..     171     196 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                HHHHHHTT..SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  6 kILklLae..gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                kIL++L e  g ++ +e+a +++l++stv +  ++L  a LV+
  EHT99750.1 24 KILNALGEhpGGMSLGEIAHAVDLPRSTVQRIVAALDSAELVR 66
                8*******8888*******************999999999997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
                 HHHHHHHHHTT.SSEEH CS
       HTH_5   3 tRlkILklLae.gelcv 18 
                 t+  +L +L+e +e+++
  EHT99750.1 179 TQAALLEMLREvRETSI 195
                 55566777777666665 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05     0.012       7      38 ..      24      56 ..      23      60 .. 0.91
   2 ?   -2.7   0.0       5.9   5.5e+03       9      24 ..      98     120 ..      97     120 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
  HTH_AsnC-type  7 kILeaLqed.aRisyaeLAervGlSestvlrRv 38
                   kIL+aL e  + +s  e+A +v l +stv+r v
     EHT99750.1 24 KILNALGEHpGGMSLGEIAHAVDLPRSTVQRIV 56
                   9*****************************955 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.9
  HTH_AsnC-type   9 LeaLqed.......aRisyaeLA 24 
                    Le L +d       +R+s a+LA
     EHT99750.1  98 LEKLSADtnetvslSRASGAQLA 120
                    56666665555555677766665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05     0.011       7      50 ..      24      68 ..      20      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                HHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        MarR  7 viLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRs 50
                +iL  l e+++ +s+ e+a ++ + +stv r++ +L  ++l+++s
  EHT99750.1 24 KILNALGEHPGgMSLGEIAHAVDLPRSTVQRIVAALDSAELVRSS 68
                688889999988******************************975 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.5e-05     0.052      12      49 ..      35      69 ..      16      72 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegGiagLvprrr 49
                G+s  e+A+++ + r+tv+r + ++++   a Lv  ++
  EHT99750.1 35 GMSLGEIAHAVDLPRSTVQRIVAALDS---AELVRSSG 69
                78*******************999888...55665555 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0004      0.37       1      41 [.      21      61 ..      21      69 .. 0.91
   2 ?    0.2   0.0      0.79   7.5e+02       2      17 ..     180     196 ..     179     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLee 41
                R+ +il  L e+ g +s  e+A   ++ r+tv+r ++aL +
  EHT99750.1 21 RAAKILNALGEHPGGMSLGEIAHAVDLPRSTVQRIVAALDS 61
                7889*****999999**********************9965 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.79
      HTH_11   2 llqilelLleargp.is 17 
                 + ++le+L+e r++ is
  EHT99750.1 180 QAALLEMLREVRETsIS 196
                 5689******9998887 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.17       4      45 ..      19      60 ..      18      64 .. 0.93
   2 ?   -1.2   0.0       2.2   2.1e+03       2      19 ..     175     191 ..     174     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
     HTH_Mga  4 ikrklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                i+r +k+l++L e+ + ++l e+a++ +l ++t+q ++  L 
  EHT99750.1 19 IARAAKILNALGEHPGGMSLGEIAHAVDLPRSTVQRIVAALD 60
                78999******************************9998885 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.2
     HTH_Mga   2 kdikrklkLlelLtenek 19 
                 k +k+++ Lle L e  +
  EHT99750.1 175 KTVKTQAALLEMLRE-VR 191
                 678999999999977.44 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.21      20      41 ..      35      56 ..      33      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                T--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4 20 glTleEIgerlgiSrerVrqie 41
                g++l EI+   +++r++V +i 
  EHT99750.1 35 GMSLGEIAHAVDLPRSTVQRIV 56
                79****************9996 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.28      22      54 ..      36      69 ..      20      77 .. 0.81
   2 ?   -1.1   0.0       2.1   1.9e+03      18      43 ..     107     132 ..      90     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglis.rg 54
                ++  e+A+ + l r+tv ri ++L  + l++  g
  EHT99750.1 36 MSLGEIAHAVDLPRSTVQRIVAALDSAELVRsSG 69
                7788*************************99544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
                 EEEEHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2  18 ielpltqeelAsmlGltretvsrils 43 
                  +++l+++  A++  ++ +  sr+l+
  EHT99750.1 107 ETVSLSRASGAQLAVIHYVVASRELR 132
                 35788888888888888888888886 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.14      33      77 ..      22      66 ..      11      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                HHHHHHHHHH-EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 33 emallwvLnlaDGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                + ++l+ L    G +sL +iA+ ++lp  +v+ i+ aL  a+l++
  EHT99750.1 22 AAKILNALGEHPGGMSLGEIAHAVDLPRSTVQRIVAALDSAELVR 66
                5677888888889*****************************997 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00043       0.4      20      41 ..      35      56 ..      32      57 .. 0.95
   2 ?   -3.4   0.0       9.2   8.7e+03      23      28 ..     250     255 ..     241     256 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
      HTH_38 20 GlslreIArrLgrspsTIsREl 41
                G+sl eIA  ++  +sT++R +
  EHT99750.1 35 GMSLGEIAHAVDLPRSTVQRIV 56
                8*******************87 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.2
      HTH_38  23 lreIAr 28 
                 +reI++
  EHT99750.1 250 IREIGK 255
                 789987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.7   1.6e+03      40      52 ..      21      33 ..      19      35 .. 0.81
   2 ?   10.0   0.0   0.00073      0.69       9      31 ..      35      57 ..      31      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.7
                HHHHHHHHHTSEH CS
       HTH_3 40 tlkklakaLgvsl 52
                ++ k+++aLg ++
  EHT99750.1 21 RAAKILNALGEHP 33
                789******9876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00073
                THHHHHHHHHHTSSHHHHHHHHT CS
       HTH_3  9 glsqeeLAeklGvsrstisriEn 31
                g+s+ e+A +++++rst++ri  
  EHT99750.1 35 GMSLGEIAHAVDLPRSTVQRIVA 57
                9*******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2050.85
//
Query:       EHT99751.1  [L=533]
Description: putative multidrug efflux MFS transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-26   91.6  45.8    6.7e-26   91.0  45.8    1.3  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0  45.8   3.7e-30   6.7e-26       1     352 [.      25     421 ..      25     422 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 3.7e-30
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGl 97 
                 +++aa+ s+l+  +  +al   +  +lg+  +  ++++++y ++ ++a++++ +++  f+ rr +l++++ ++++g+ll+l+  + + l+++lrv+qGl
  EHT99751.1  25 VWIAALTSGLNDRVSDIALA-DIRAALGMGYDDGSWIVSAYQAAEVAAMMIAPWFAVTFSLRRfTLFVSVGFMLSGILLPLM--TDPvLFMALRVIQGL 120
                 68999***************.9**************************************9999************888885..57779********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 ++gal p+ ++++ +  p++ +  ++g +++++ +G+ +++ l+++ +++++W  vf+ + + +l+a+vl ++ lp++p + +r+ ++++         
  EHT99751.1 121 FGGALPPMLMTVALRFLPPPFKLYGLGAYALTATFGPNMAASLAAFWTDQVSWMFVFWQVVPGMLIALVLTGWGLPQDPLRTERFQQIDLFgmltgcsg 219
                 **************************************************************************************99999******** PP

       MFS_1 189 .......................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllpl.ylqevlgls..glll 245
                                                        ++  p pl++ +++l++++ l   l++l+++ +++s+  + lp+ y+ +v g+    +  
  EHT99751.1 220 mvliilvlsqgerldwldspliaamllaavpllivflinEWFHPLPLFK-LQMLRRPNLLH-GLLVLAGV-LIVSLSGSALPSsYFAQVDGFRiaQFAP 315
                 **************************************99999******.99999999443.33333333.2566688888888889999999998888 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                 ++l+++l++l++   a+l+++l++     +r++la++l++l+a +l+ +  t  +    ++l+ +l  +g+ +v  ++l  a++++ p e  +as+ fn
  EHT99751.1 316 LALTIGLPQLIV---APLLAALLNIRWIDCRWMLAVGLCFLIASCLLGMQITtdWARDNFWLIQALQAVGQPMVILPVLMSATSVVAPPEGPFASAMFN 411
                 9999********...666777776655667888888888888888888888853333333335566777*****99999999999999*********** PP

       MFS_1 343 tagslggalg 352
                 t+++++++ +
  EHT99751.1 412 TVRGFSSIAA 421
                 ******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3659.35
//
Query:       EHT99752.1  [L=342]
Description: HlyD family secretion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.4  11.2    5.6e-18   65.0  11.2    2.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      4e-17   62.8   8.1    2.2e-14   54.0   1.3    2.8  2  HlyD_3           HlyD family secretion protein
    1.4e-16   60.0   8.5    1.3e-15   56.9   0.5    3.7  3  Biotin_lipoyl_2  Biotin-lipoyl like
    2.4e-10   40.1  15.3    3.5e-10   39.6  15.3    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS
    0.00041   20.1   0.0       0.03   14.1   0.0    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
       0.03   14.4   0.5      0.044   13.8   0.5    1.1  1  Neur_chan_memb   Neurotransmitter-gated ion-channel transmemb
      0.058   13.6   0.0        2.4    8.4   0.0    2.5  2  Peptidase_M23    Peptidase family M23
       0.07   13.0   3.3        0.1   12.4   3.3    1.2  1  SKA1             Spindle and kinetochore-associated protein 1
      0.075   13.5   0.3      0.075   13.5   0.3    2.4  3  SIT              SHP2-interacting transmembrane adaptor prote
          1    9.9   4.0        8.1    7.0   1.8    2.6  2  DUF16            Protein of unknown function DUF16
        2.2    8.7   6.8          4    7.8   6.8    1.4  1  CCDC53           Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0  11.2   3.4e-21   5.6e-18      19     187 ..      46     289 ..      40     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 3.4e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................................................. CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk................................................. 68 
                 ++ v+++v+G++ +++v+   ++V++G+ La+l+  +   a e   +al+                                                 
  EHT99752.1  46 YTLVAPKVSGYIASVRVK-DNQQVAAGELLATLDDRDYKVALESAEAALQvseakllsskaqleqqqsvideqkasvsasqasaqyagqsaerynrlyq 143
                 56799*************.9*************999888887777777777778*****99*9999999999999999999999988888888888888 PP

                 ...........XXXXXXXX.........................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ...........akkklkkke........................lleaarerLrllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqp 132
                            a       +                         + +a+ r    +v ++  a++ + +   +++ + ap++G+V +++vr G yv++
  EHT99752.1 144 rgtvaadeqqkA-------SsaqrsasaavrqseaalasaikqvGVLQAAVRSAEADVAAAR-ASVDQARLNLSYTRIVAPVAGMVGQRAVRLGAYVSA 234
                 888876654330.......1344567777888777666666644333333333444444333.56667777778899********************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 133 gdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiypt 187
                 g++l+ +  l++ +++a+  e+ql+ v++gq+v+++v+alp++ f+G+vd i+p 
  EHT99752.1 235 GTRLLAVVPLQQTYITANYLETQLQDVRPGQPVRIRVDALPDQIFTGHVDSIAPA 289
                 ****************************************************997 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.8   0.00015      0.25       5      48 ..      52      94 ..      47     161 .. 0.68
   2 !   54.0   1.3   1.4e-17   2.2e-14       2     106 .]     213     332 ..     212     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      HlyD_3  5 pvdGvvvelnveegevvqagdelleiippdtllveakvpaadlg 48
                 v+G ++++ v+ ++ v+ag+ l+++ + ++++v ++ ++a+l+
  EHT99752.1 52 KVSGYIASVRVKDNQQVAAGELLATLDD-RDYKVALESAEAALQ 94
                489**********************997.444444444443333 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 1.4e-17
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp.........tvda.ktg..... 85 
                 + Apv+G v +  v+ g +v+ag++ll ++p ++  ++a   +++l+ ++ +gq+v++++d  +d+  +g +++i+p          +d+ +++     
  EHT99752.1 213 IVAPVAGMVGQRAVRLGAYVSAGTRLLAVVPLQQTYITANYLETQLQDVR-PGQPVRIRVDALPDQIFTGHVDSIAPatgatfaaiAPDNaTGNytkvv 310
                 89***********************************************7.**************************6655444333334133322222 PP

      HlyD_3  86 .aykvevslenpekksiplkpG 106
                  +++v++ l++++k+  +l++G
  EHT99752.1 311 qRLPVKIVLDQNQKNLAQLRVG 332
                 2444666666665666666665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.5   8.1e-19   1.3e-15       5      50 .]      49      94 ..      45      94 .. 0.97
   2 ?   -1.2   0.4       1.2   1.9e+03      38      49 ..     183     194 ..     167     195 .. 0.79
   3 !    6.0   0.1    0.0062        10       4      30 ..     212     238 ..     209     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 8.1e-19
  Biotin_lipoyl_2  5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50
                     +a++vsG +a+++Vkd+q+V aG +La+lD+r++++al  aea+l+
       EHT99752.1 49 VAPKVSGYIASVRVKDNQQVAAGELLATLDDRDYKVALESAEAALQ 94
                     9******************************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
  Biotin_lipoyl_2  38 lqlalaqaeaql 49 
                      lq+a++ aea++
       EHT99752.1 183 LQAAVRSAEADV 194
                      678888899987 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0062
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvL 30 
                       I apv+G V q +V+ G +V aG  L
       EHT99752.1 212 RIVAPVAGMVGQRAVRLGAYVSAGTRL 238
                      5889********************765 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6  15.3   2.1e-13   3.5e-10      12      75 ..      77     336 ..      13     341 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.1e-13
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                                                                                                                    
  EHT99752.1  77 Lddrdykvalesaeaalqvseakllsskaqleqqqsvideqkasvsasqasaqyagqsaerynrlyqrgtvaadeqqkassaqrsasaavrqseaalas 175
                 055555555555555555555566666666666666666666666666666666666666666666666666666666666666666667777777777 PP

                 ...............................................................................EEEEEEEECEEEEEEEGCGE CS
                 ...............................................................................xxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 ...............................................................................etdldqvrvgqpvevrfdAf 32 
                                                                                                et+l+ vr+gqpv +r+dA+
  EHT99752.1 176 aikqvgvlqaavrsaeadvaaarasvdqarlnlsytrivapvagmvgqravrlgayvsagtrllavvplqqtyitanylETQLQDVRPGQPVRIRVDAL 274
                 7777777777777788888888888888888888888888888888899999999999999999999999999999999******************** PP

                 EECTTTSEEEEEEECTSB......................EEEEEEEEEEEETTEEEESSSS-TT CS
                 xxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  33 pqtktgkftgvVvgispd......................rvpvrvvvekaqgpyyplriglkag 75 
                 p++    ftg V++i+p+                      r+pv++v++++q + ++lr+g++a 
  EHT99752.1 275 PDQ---IFTGHVDSIAPAtgatfaaiapdnatgnytkvvqRLPVKIVLDQNQKNLAQLRVGMSAV 336
                 ***...9********************************************************85 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.9e-05      0.03      45      73 .]      48      77 ..      44      77 .. 0.87
   2 ?    3.5   0.0     0.038        62      44      71 ..     212     239 ..     209     241 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
                   EEBSS.SEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 45 ieapk.aGvvkeilvkeGdtvevgdllaki 73
                   + apk +G+++++ vk++++v +g+lla++
     EHT99752.1 48 LVAPKvSGYIASVRVKDNQQVAAGELLATL 77
                   667766*********************986 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.038
                    EEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdlla 71 
                     i ap+aG v +  v  G+ v++g+ l+
     EHT99752.1 212 RIVAPVAGMVGQRAVRLGAYVSAGTRLL 239
                    699*********************9875 PP

>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   2.7e-05     0.044      70     211 ..      17     200 ..       8     223 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                     HHHHHH.HHHHHHHHH-S-S---HHHHHHHTTHHHHHHC--------------.......................................... CS
  Neur_chan_memb  70 lsivet.vfVlnvhhrsprthtmpawvrkvfldklprllfmkrpsevkdnekkl......................................... 122
                     l+++ +  +V  v  r++ ++t  awv+   +   p++ +     +vkdn++                                           
      EHT99752.1  17 LVLLAMaLIVWSVMTRND-HRTNDAWVNADYTLVAPKVSGYIASVRVKDNQQVAagellatlddrdykvalesaeaalqvseakllsskaqleqq 110
                     333333034555555555.4688999999999999999999999889988887799999999999999999999999999998888644433332 PP

                     --------------------------------------SS---TTGGG--..............-----TTTTTHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 123 ssgasseaeelilskskseskkaklseeqgsekastckckckegeeaspstqlsk.........eelspelkkavegvkyiadhlraededksvk 208
                     +s+  +++++++ s+ +++   ++ ++ +   ++ t + ++++++         +         ++ + +l +a+++v + +  +r+ ++d ++ 
      EHT99752.1 111 QSVIDEQKASVSASQASAQYAGQSAERYNRLYQRGTVAADEQQKAS--------SaqrsasaavRQSEAALASAIKQVGVLQAAVRSAEADVAAA 197
                     2222223333333333334444444444444444444433322222........1333334567888999999*****99999999999987776 PP

                     HHH CS
  Neur_chan_memb 209 edw 211
                     +  
      EHT99752.1 198 RAS 200
                     655 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0015       2.4      51      76 ..      56      81 ..      38      97 .. 0.85
   2 ?    2.3   0.0      0.12   1.9e+02      14      63 ..     211     267 ..     202     269 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
                   EESEESS-TTEEE-TTCEEEEEBSTS CS
  Peptidase_M23 51 hlskisvkegqkVkaGqvIGtvgstg 76
                    + +++vk +q+V+aG+ ++t  ++ 
     EHT99752.1 56 YIASVRVKDNQQVAAGELLATLDDRD 81
                   567899**************998665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                    -EEEESSSEEE....EEEEEETTTEEEEEEEE..CTC.EEEEEEEESEESS-TTEEE CS
  Peptidase_M23  14 tpVlAaadGtV....vfagkkegyGnvviidh..gdg.ystlyahlskisvkegqkV 63 
                    t ++A+ +G V    v  g + ++G+ ++     ++  ++  y+  +  +v++gq V
     EHT99752.1 211 TRIVAPVAGMVgqraVRLGAYVSAGTRLLAVVplQQTyITANYLETQLQDVRPGQPV 267
                    789999999997544444443344443333323344414445666666668888877 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.3   6.2e-05       0.1      19     109 ..      81     170 ..      69     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.2e-05
                 .....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  19 allkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspeeeeeteskke 109
                 ++ k  l+  ea+++  e +l + k++l++++++i+++k+ + as+ + + + + +e +++  ++ t a  +++++ss + +++++  ++e
  EHT99752.1  81 DY-KVALESAEAALQVSEAKLLSSKAQLEQQQSVIDEQKASVSASQASAQYAGQSAERYNRLYQRGTVAADEQQKASSAQRSASAAVRQSE 170
                 44.67788889999999999**************************99999**********999999999888888887776665444432 PP

>> SIT  SHP2-interacting transmembrane adaptor protein, SIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   4.6e-05     0.075       5      34 ..      10      39 ..       8      54 .. 0.85
   2 ?   -2.5   2.7       4.3     7e+03      57      92 ..     105     130 ..      79     159 .. 0.59
   3 ?   -2.7   3.4       4.8   7.8e+03      56      61 ..     138     143 ..     100     187 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
         SIT  5 lilallLlllviasllawrmkkrqkkaaey 34
                ++l+llLl+l+++ l++w  + r+++ ++ 
  EHT99752.1 10 VLLSLLLLVLLAMALIVWSVMTRNDHRTND 39
                6899*******************9997765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.3
         SIT  57 anLnlqqtgtspesseekcyeqmkssaqrsqnevey 92 
                 a+L++qq+   ++          k+s+++sq+  +y
  EHT99752.1 105 AQLEQQQSVIDEQ----------KASVSASQASAQY 130
                 4444444432222..........2233333332222 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.8
         SIT  56 YanLnl 61 
                 Y  L +
  EHT99752.1 138 YNRLYQ 143
                 333333 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.8     0.005       8.1      30      80 ..      87     137 ..      76     147 .. 0.69
   2 ?    1.8   0.0      0.21   3.5e+02      32      73 ..     162     203 ..     151     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.005
                 ..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
       DUF16  30 dsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnk 80 
                 +s ++ L+ +eak+ + + q+++++  +++q + ++  ++  +  g++ ++
  EHT99752.1  87 ESAEAALQVSEAKLLSSKAQLEQQQSVIDEQKASVSASQASAQYAGQSAER 137
                 346677777888888888888888888888888887777666666665555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.21
                 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqka 73 
                   + ++++ea +++  +q+ +l+ +v+  ++ +   ++ +++
  EHT99752.1 162 ASAAVRQSEAALASAIKQVGVLQAAVRSAEADVAAARASVDQ 203
                 566778899999999999999999999999888777666655 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.8    0.0025         4      27     105 ..      83     168 ..      80     207 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0025
      CCDC53  27 ekrlqrleitlalLEak.LsSipgleeveaeaaeastsddn......................aarkgppppppsseaaaaaaqaeeasqaeesaeeea 102
                 +  l+ +e+ l++ Eak LsS  +le+ ++   e+++s ++                      +                 aa +++++++++++ ++a
  EHT99752.1  83 KVALESAEAALQVSEAKlLSSKAQLEQQQSVIDEQKASVSAsqasaqyagqsaerynrlyqrgT----------------VAADEQQKASSAQRSASAA 165
                 678999***********55666688887777665555544455556544444444444332220................2222222222222222222 PP

      CCDC53 103 eeq 105
                   q
  EHT99752.1 166 VRQ 168
                 222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1700  (0.0948185); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 2536.16
//
Query:       EHT99753.1  [L=23]
Description: membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 185.29
//
Query:       EHT99754.1  [L=411]
Description: putative aminotransferase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-59  200.4   0.0    5.4e-59  200.2   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
     0.0055   15.6   0.0       0.18   10.6   0.0    2.2  2  Alliinase_C      Allinase
  ------ inclusion threshold ------
       0.06   12.6   0.0        0.1   11.9   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
       0.14   10.7   0.0       0.21   10.1   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.0   1.2e-62   5.4e-59       2     355 ..      37     382 ..      36     390 .. 0.92

  Alignments for each domain:
  == domain 1  score: 200.2 bits;  conditional E-value: 1.2e-62
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    d+i+L+ ++++g+    t+p+++++  + +++ ++++ y++++g p l+ a+ +++++++++++++e++ +v+ G++++++ l+ ++ l++gd +l
     EHT99754.1  37 DIIDLSMGNPDGA----TPPHIVEKLCQ-VAQREDTHGYSTSRGIPRLRRAISRWYQERYQVDIDPESEAIVTIGSKEGLAHLMLAT-LDHGDTVL 126
                    89***********....***********.**********************************************************.******** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-.HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTT CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhld.lealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                    vp+p+y+ ++ ++ ++g++v+++pl      ++d +++le+a++e     +k+k++++  p+NPt +   l+  e +++lak+yn+l++ D aYa+
     EHT99754.1 127 VPNPSYPIHIYGAVIAGAQVRSVPLV----EGIDfFNELERAIRE---SYPKPKMMVLGFPSNPTSQCVELDFFERVIALAKQYNVLVIHDLAYAD 215
                    ************************98....466635899999998...345779****************************************** PP

                    CBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 193 fvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrr 285
                     v++  +a + +++v  + +  +   +lsK++++aG+R+G+ +gn+++v +l+++++   +   ++lq a+ aal+ +++    + + ++++++rr
     EHT99754.1 216 IVYDGWKAPS-IMQVPGARDvAVEFFTLSKSYNMAGWRIGFMVGNKELVAALARIKSYHDYgtFTPLQVAAIAALEGDQQ---CVRDIAEQYKRRR 307
                    ****888888.666666655568999******************************9877778****************8...9************ PP

                    HHHHHHHHHSTEEEECCSCSSEEEEEETHH....CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHH CS
  Aminotran_1_2 286 kelrdeLaelglkvlasqsgmflltdlsae....takelskkLleevgvyvtpgtsftv..pgrlRitvAglteee 355
                    ++l+++L e+g+ v ++++ m+++  ++ +       e++k +l+e +v v+pg  f+    +++R+ +   +++ 
     EHT99754.1 308 DVLVKGLHEAGWMVDIPKASMYVWAKIPDHyahlGSLEFAKHMLQEAKVCVSPGVGFGDygDTHVRFAL-IENSDR 382
                    ****************************99999999*****************9888877777777776.444455 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0     4e-05      0.18     157     219 ..     196     268 ..     164     315 .. 0.72
   2 !    3.0   0.0    0.0082        37     318     362 ..     348     393 ..     323     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4e-05
                  --...-TT-EEEEEE-TT....-..S..TTTS---S-B--SEEEEEHHHHHS-GGG-EEEEEES-HHHHHHHHH CS
  Alliinase_C 157 vv...kgseakviyDlay....Y..W..PhytpitskadedimLftlskltGhaGsrlGWalvkdkevakklve 219
                  v+   k+ ++ vi+Dlay    Y  W  P   ++  + d  +  ftlsk    aG r+G+ +v +ke+   l +
   EHT99754.1 196 VIalaKQYNVLVIHDLAYadivYdgWkaPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGF-MVGNKELVAALAR 268
                  44444677788999998855543556557777788888888999***************9.5666665555554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0082
                  HHHHHTTTEEEEEGGGGTS.-TTEEEEESSS-HHHHHHHHHHHHTS CS
  Alliinase_C 318 aevlrekkiltrsGevfea.esryvrlsllkrdddfdvllerlkkl 362
                  +++l+e+k+    G  f++ +  +vr +l+++ d   + ++ +k +
   EHT99754.1 348 KHMLQEAKVCVSPGVGFGDyGDTHVRFALIENSDRIRQAVRGIKAM 393
                  6789*************864789************99999888876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05       0.1      92     169 ..     140     212 ..     135     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
                      HCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase  92 elagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                      ++ag+++r ++  e G   +++le+ai+e  + ++k+k+ +l    n    q+v+l+  ++v a+ak+y++ ++ D A
       EHT99754.1 140 VIAGAQVRSVPLVE-GIDFFNELERAIRE--S-YPKPKMMVLGFPSNP-TSQCVELDFFERVIALAKQYNVLVIHDLA 212
                      57899999999999.87789*********..5.79*******999995.79********************9999966 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.6e-05      0.21      84     173 ..     115     210 ..      95     217 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.6e-05
                      HHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.TSHHHHHHHCCT...TEEEEEEESS-TTTT----...HHHHHHHHHHTT-EE CS
  Cys_Met_Meta_PP  84 ilallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.sdleelekaike...ntklvylEtptnpllkvvD...iekiaklakkagvlv 170
                      +la l +Gd ++v +  Y            ++  +v  v+  + ++ele+ai+e   + k++ l  p+np+ ++v    +e++++lak+ +vlv
       EHT99754.1 115 MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQV-RSVPLVEGiDFFNELERAIREsypKPKMMVLGFPSNPTSQCVEldfFERVIALAKQYNVLV 207
                      55666667777777766654332222222222.2233333336689999999877779**************9987334589************ PP

                      EEE CS
  Cys_Met_Meta_PP 171 vvD 173
                      + D
       EHT99754.1 208 IHD 210
                      988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3406.69
//
Query:       EHT99755.1  [L=174]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-23   83.9   0.0    1.8e-23   83.7   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    2.1e-05   24.7   0.0    2.6e-05   24.4   0.0    1.1  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0028   17.8   0.0      0.003   17.7   0.0    1.1  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
     0.0093   15.9   0.0      0.017   15.1   0.0    1.4  1  FR47            FR47-like protein
  ------ inclusion threshold ------
      0.027   14.5   0.0      0.036   14.1   0.0    1.2  1  DUF1336         Protein of unknown function (DUF1336)


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   5.1e-27   1.8e-23       1     137 [.       7     145 ..       7     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 5.1e-27
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpevmrylpepltleeaeewlera...waeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlapsf 91 
                     RL+L  l++eD + + ++ +d+++mr+++  +++++ +e+++++   w+++s +  ++++i+ +d+g+ iG  g+++  +  ++ae+gyml + +
      EHT99755.1   7 RLTLTSLQPEDWQLFRAVHEDRDTMRWVSDIPDEDDIRERFRQRlapWQPGSFH-MLCLVIRRRDSGEaIGLLGCTPEWQPARQAEVGYMLLHRH 100
                     9**********9998789*********999999999999999997777764332.25577777999988*******66555556********999 PP

  Acetyltransf_3  92 wgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                      g+G+++ea++al+  +f+     +l+a + k N aS+r+lek Gf
      EHT99755.1 101 CGQGFGSEALEALCACLFDAD-FLKLRALVVKGNWASRRILEKNGF 145
                     9*****************999.667********************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   7.3e-09   2.6e-05      18     117 .]      41     145 ..      20     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.3e-09
                     HHHHHH....HHHHHHSTTC.....EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEE CS
  Acetyltransf_1  18 daseee....feesfsleae.....gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlave 102
                     d+  e+     +++   +++     +l++  ++ ge iG +++++ ++   + a++ +++    + g+G Gs+ leal   +++  + k+ + v 
      EHT99755.1  41 DDIRERfrqrLAPW---QPGsfhmlCLVIrRRDSGEAIGLLGCTPEWQ-PARQAEV-GYMLLHRHCGQGFGSEALEALCACLFDADFLKLRALVV 130
                     33333311233333...22222222555555555**************.5777777.788888888*******************9988855588 PP

                     TTEHHHHHHHHHTTE CS
  Acetyltransf_1 103 edndaairlYeklGF 117
                     + n a++r +ek GF
      EHT99755.1 131 KGNWASRRILEKNGF 145
                     99***********99 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.5e-07     0.003       5     152 ..      14     163 ..      10     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.5e-07
  Acetyltransf_4   5 teeDakeilaiyaeyvvntaitfeyev.ssveefekflealdsek..eyvflvae...sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeg 93 
                     ++eD + ++a+ ++ +  + +  + ++ +  e+f ++l++  +++   ++ lv+    s++ +G +    +++     +ae+ + l +r    +g
      EHT99755.1  14 QPEDWQLFRAVHEDRDTMRWVSDIPDEdDIRERFRQRLAPW-QPGsfHMLCLVIRrrdSGEAIGLLGCT-PEW-QPARQAEVGYMLLHR-HCGQG 104
                     56666666666665555554444444425557888999998.666232233333345599999999888.788.567788999988865.78899 PP

  Acetyltransf_4  94 lgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                      g+e ++al  +l    +++l a +++ n +s  ++++ GF l + +++ +  n rw +
      EHT99755.1 105 FGSEALEALCACLFDADFLKLRALVVKGNWASRRILEKNGFLLKRTLQNNYLLNDRWVN 163
                     *********************************************************87 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.8e-06     0.017      29      80 ..      96     148 ..      87     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.8e-06
                 E-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  29 vlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfeki 80 
                 +l  h ++G+gs   +al + +      ++ ++vv +N++s+r++ek Gf + 
  EHT99755.1  96 LLHRHCGQGFGSEALEALCACLFDaDFLKLRALVVKGNWASRRILEKNGFLLK 148
                 4667999***************995567899******************9765 PP

>> DUF1336  Protein of unknown function (DUF1336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     1e-05     0.036     130     169 ..     122     161 ..      92     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
     DUF1336 130 rfKliarvvngewivkkavggkPvLigkklkvkYfrskef 169
                  +Kl a vv+g+w+ ++ ++++ +L++++l+ +Y+ ++++
  EHT99755.1 122 FLKLRALVVKGNWASRRILEKNGFLLKRTLQNNYLLNDRW 161
                 59********************************977755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1329.59
//
Query:       EHT99756.1  [L=592]
Description: putative two-component sensor kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-43  145.6  15.3    1.8e-42  144.7  15.3    1.5  1  5TM-5TMR_LYT     5TMR of 5TMR-LYT
    4.9e-25   87.7   0.4    1.1e-24   86.5   0.4    1.6  1  His_kinase       Histidine kinase
    8.2e-08   32.7   0.1    1.8e-07   31.6   0.1    1.6  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    1.9e-07   31.5   0.0    7.3e-06   26.3   0.0    2.5  2  GAF_2            GAF domain
    2.5e-05   24.4  13.3    4.6e-05   23.5  13.3    1.4  1  ECF-ribofla_trS  ECF-type riboflavin transporter, S component
    0.00013   22.3   0.0      0.014   15.7   0.0    2.4  2  GAF_3            GAF domain
    0.00024   20.1  12.1    0.00037   19.5  12.1    1.2  1  MFS_1            Major Facilitator Superfamily
    0.00025   21.2  12.3    0.00059   20.0  12.3    1.7  1  ECF_trnsprt      ECF transporter, substrate-specific componen
    0.00086   19.9   0.3     0.0032   18.1   0.0    2.1  2  GAF              GAF domain
     0.0016   18.5   2.0      0.012   15.6   0.1    2.3  2  SpoVT_C          Stage V sporulation protein T C-terminal, tr
  ------ inclusion threshold ------
       0.09   12.7   0.0       0.17   11.9   0.0    1.4  1  HATPase_c_2      Histidine kinase-like ATPase domain
        4.9    7.2  12.0        7.8    6.5   2.9    3.6  3  Bac_export_3     Bacterial export proteins, family 3


Domain annotation for each model (and alignments):
>> 5TM-5TMR_LYT  5TMR of 5TMR-LYT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7  15.3   1.2e-45   1.8e-42       2     166 ..      59     221 ..      58     224 .. 0.93

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 1.2e-45
  5TM-5TMR_LYT   2 plfrkllsekrktlksklllglifglfsilgtytgieiegaiantRaigvvvaGllgGplvGliagliaglhRyl..lgGftalacgistilaglla 96 
                   p fr++l+++++t  +k+++++if+lf++++t +g++++g++ n+R+i v+ +G+l+Gp+vG+++g+iaglhR+l  + G+t+++c++++i+ag++a
    EHT99756.1  59 PPFRQILQKDEHTALEKAAVIAIFSLFALFSTWSGVNVDGSLLNVRVIAVMAGGILFGPWVGITTGVIAGLHRFLidIHGVTSVPCLMTSIIAGIVA 155
                   679****89999***************************************************************999******************* PP

  5TM-5TMR_LYT  97 GlihrklkrrrkkltvlvalligllveilqmllilllakpfdqalalvktialPmilvnslgtalflsil 166
                   G ihr+++   ++ ++lv++l g+++e+l+mlli+l+a p++++l++v+ ialPmil  +  + l+++++
    EHT99756.1 156 GAIHRRVQ---RERRWLVGILGGMFCESLTMLLIVLWATPTALGLTIVSEIALPMILGAAS-IGLIVLLV 221
                   ********...69******************************************996543.44445544 PP

>> His_kinase  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.4   7.5e-28   1.1e-24       1      78 []     389     468 ..     389     468 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 7.5e-28
  His_kinase   1 aelkaLqaqinPHFlfNtLnsiqslaeedpeeaeemlekLskllrysl.eseee.vtLeeElellesYlelqklrfgdrl 78 
                 ael+aLq++inPHFlfN+Ln+i+s ++ +p++a++++ +Ls++lry+l  +++e + +++El  +++Y++++++rfgd+l
  EHT99756.1 389 AELRALQSKINPHFLFNALNAISSSIRLNPDTARQLVINLSRYLRYNLeLNDDElIDIKKELWQVKDYIAIEQARFGDKL 468
                 79***********************988********************434444677********************986 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   1.2e-10   1.8e-07       9     110 ..     486     582 ..     483     584 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHHHHH..HSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTT.EEEE.EEETTTE CS
   HATPase_c   9 iisnlvdNavkf..atkageieveikase..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgG.eiwv.esepgrG 101
                 +i+ lv+Na+ +  ++ +g++ v++++++  d+++i v+D+G+Gi+ e ++++  + +          g+ +Gl  v+  v+l+ G  +++ + +p  G
  EHT99756.1 486 LIQPLVENAIVHgiQPCKGKGVVTLSVRDlgDRVRIAVRDTGKGISDEVIDRVARNEMP---------GNKIGLLNVHHRVKLLSGeGLHIaRHQP--G 573
                 67889999999987778889999999877789*******************77766666.........***********99966652444423555..* PP

                 EEEEEEEES CS
   HATPase_c 102 ttftftlpl 110
                 t++ ftl +
  EHT99756.1 574 TEIAFTLSK 582
                 **9999875 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.13   1.9e+02      85     132 ..     194     245 ..     183     246 .. 0.75
   2 !   26.3   0.0   4.9e-09   7.3e-06       8     134 ..     258     371 ..     255     375 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
                 HHHHTT--EEEEEE-TTS---EEEEE....S......--HHHHHHHHHHHHH CS
       GAF_2  85 aghaglrsflavPlisegrvvGvlnl....yankppafdeedlelLeelaeq 132
                 a +  + s++a+P+i +   +G ++l    +  +++a  +++  l+  +a+q
  EHT99756.1 194 ALGLTIVSEIALPMILGAASIGLIVLlvqsVEGEKEAIAARQAKLALDIANQ 245
                 677789999*******989***999877665666666777777777666665 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 4.9e-09
                 HHHHHHHHHH.SS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTH.HHHHHHHTS-EEES-.GGG-S-HHHHHHHHHTT--EEEEEE-TTS- CS
       GAF_2   8 ldlvldelve.lgaalgyillvdddgglrlaawgeaeeefgaaldrplgegl.vgealrtgrpvilnd.leedpdkkglpaghaglrsflavPlisegr 103
                 l++v+d +++ + a+++   + + +++  ++a+ +++e   ++ d+  g ++ +++a+++g+ +i n+  ++         +  +++s++++Pl ++g+
  EHT99756.1 258 LRRVCDIIRReIKADAVA--MTN-KQK--ILAYVGYGEHNYQHGDD--GISPtTAQAMHSGKIIIKNNdEAH---------RTKDIHSMIVIPLWEKGK 340
                 899*****7768877444..322.355..88999999999999955..667449*******98885552444.........999*************** PP

                 --EEEEES......--HHHHHHHHHHHHHHH CS
       GAF_2 104 vvGvlnlyankppafdeedlelLeelaeqia 134
                 v G l +y+ + ++ + +  e++  l++ i+
  EHT99756.1 341 VTGTLKIYYRRAHRITGSLKEMAVGLSQIIS 371
                 *************999999998888888776 PP

>> ECF-ribofla_trS  ECF-type riboflavin transporter, S component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5  13.3   3.1e-08   4.6e-05      14     129 ..      76     194 ..      71     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.1e-08
                      HHHHHHHHHH..---B-S.SS-B.--TTHHHHHHHHHHSS--STHHHHHHHHHHHHHHHSS-G.GGHHHHHHHHHHHHHHHHHH--S-S-SSH. CS
  ECF-ribofla_trS  14 aAlvvvltlf..isIplpanteg.sinlgdavlalaallfGpvvGflvGaiGsalaDllsgYg.iwapftliikgliGlivGliakklkknken 103
                      aA++++++lf  +s  +++n++g  +n+  + ++  ++lfGp+vG+  G+i  +   l++  g +++p  l+++ + G+++G i+++ +++ + 
       EHT99756.1  76 AAVIAIFSLFalFSTWSGVNVDGsLLNVRVIAVMAGGILFGPWVGITTGVIAGLHRFLIDIHGvTSVPC-LMTSIIAGIVAGAIHRRVQRERRW 168
                      5666666666446666669999999************************99986666666677588888.******************998885 PP

                      ..HHHHHHHHHHHHHHHHHHHHHHHH CS
  ECF-ribofla_trS 104 gvfkilalvlfaivmvigyviaegll 129
                       v  + ++++ ++ m++  + a+  +
       EHT99756.1 169 LVGILGGMFCESLTMLLIVLWATPTA 194
                      55555558888888887666666555 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.039        58      77     122 ..     196     245 ..     187     246 .. 0.80
   2 !   15.7   0.0   9.3e-06     0.014      28     128 ..     276     375 ..     252     376 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.039
       GAF_3  77 glpdraalavPLvagrqviGvlal..astkpra..fdaedlelleslArq 122
                 gl   + +a+P+++g  +iG+++l  +s ++++  + a+++ l  ++A+q
  EHT99756.1 196 GLTIVSEIALPMILGAASIGLIVLlvQSVEGEKeaIAARQAKLALDIANQ 245
                 5677899*************999753555544477999999999999998 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.3e-06
       GAF_3  28 dedgnklqvaagwdgkpalsesld.edsalarralssgevvsepsfaeedglpdraalavPLvagrqviGvlalastkprafdaedlelleslArqiat 125
                  + ++k+ +  g+++++ +  + d   s+ ++ a+ sg +++++  ++  + + ++++++PL  + +v G+l +++++   ++ + +e+   l++ i+t
  EHT99756.1 276 MTNKQKILAYVGYGEHNYQ--HGDdGISPTTAQAMHSGKIIIKNNDEAHRTKDIHSMIVIPLWEKGKVTGTLKIYYRRAHRITGSLKEMAVGLSQIIST 372
                 4455555566666555554..34437788889999999999998855555556799999*****88************999****************** PP

       GAF_3 126 aie 128
                 ++e
  EHT99756.1 373 QLE 375
                 *98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  12.1   2.5e-07   0.00037     159     330 ..      46     225 ..      32     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.5e-07
       MFS_1 159 ivsllafvlfllllpeepperkrkspkeee......kgtgpaplvp.........awkallkdpvlw..illialllfffgfsglltllplylqevlgl 240
                 +++l++  l  ++l+++pp r+   + e        +       +           w+ +  d  l+     +++++++ +++g   ++ + +    gl
  EHT99756.1  46 ALMLIC--L--FFLTRTPPFRQILQKDEHTalekaaV-------IAifslfalfsTWSGVNVDGSLLnvR--VIAVMAGGILFG--PWVGITTGVIAGL 129
                 334444..2..44444444444443333322433320.......22444555566777777777775331..222222223333..3333333444444 PP

       MFS_1 241 s.......glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdl 328
                         g+ ++     ++++++   +++ag++++r++r+rr+l+++l+++++  + +ll v + ++ +l + ++    + + lg +++ l++l++++
  EHT99756.1 130 HrflidihGVTSVP--CLMTSIIA---GIVAGAIHRRVQRERRWLVGILGGMFCESLTMLLIVLWATPTALGLTIVseiaLPMILGAASIGLIVLLVQS 223
                 44444444544555..55666665...99***********99999999999999888888888866666665444446568888888888888888888 PP

       MFS_1 329 ap 330
                 + 
  EHT99756.1 224 VE 225
                 84 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  12.3   3.9e-07   0.00059      33     129 ..     105     194 ..      75     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.9e-07
                  HHHHHHHHHCTTCHHHHHHHHHHHHHHHHCHT-SSTTHHHHHHHHHHHHCHHHHHHHHHHCCCHTTHHHHHHHHHHHHCCCCCHHHHHHHCCC.HHHH CS
  ECF_trnsprt  33 hipvllggllfGpikGailgiitsvlkailtggtgalssfvpiaflsriligliagllykkgkkknlkeivvsfilagvlgtivatllvllii.lply 129
                   i v+ gg+lfGp++G+  g+i  + ++++ +  g++s   +   +++i++g++ag + +  ++ +++  +v+++ ++++ +++++l+vl+ +     
   EHT99756.1 105 VIAVMAGGILFGPWVGITTGVIAGLHRFLI-DIHGVTS---VPCLMTSIIAGIVAGAIHRRVQRERRW--LVGILGGMFCESLTMLLIVLWATpT--A 194
                  3455567***********************.7888887...889999*********998666666665..8****************98877642..2 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-06    0.0032       6     131 ..     258     376 ..     255     377 .. 0.71
   2 ?   -3.1   0.0       7.5   1.1e+04     101     110 ..     547     556 ..     522     565 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHTESEEEEEE....EEETTEEE...CEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE CS
         GAF   6 ldtvveelrellgadrvalyl....pdydGlhy...dipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn 97 
                 l++v++ +r+  +ad va         y G  y   +  ++++   +++ +   +q++++g++++ +   +d+ +             i+s++v+Pl  
  EHT99756.1 258 LRRVCDIIRREIKADAVAMTNkqkiLAYVG--YgehNYQHGDDG--ISPTT---AQAMHSGKIIIKN---NDEAHRT---------KDIHSMIVIPLWE 337
                 677777777777788777743233322333..211112222222..22233...3999999999999...9***999.........9************ PP

                 TTEEEEEEEEEESSS.....CSHHHHHHHHHHHHHHHHH CS
         GAF  98 dgelwGllvlhnpsp.....pftreelellqvladqvav 131
                 +g++ G+l ++ +++     +  + ++ l q +++q++v
  EHT99756.1 338 KGKVTGTLKIYYRRAhritgSLKEMAVGLSQIISTQLEV 376
                 ************877777777788889999999999876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.5
                 EEEEEEEEES CS
         GAF 101 lwGllvlhnp 110
                  +Gll +h++
  EHT99756.1 547 KIGLLNVHHR 556
                 4899999995 PP

>> SpoVT_C  Stage V sporulation protein T C-terminal, transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.13   1.9e+02      78     113 ..     200     238 ..     193     245 .. 0.70
   2 !   15.6   0.1   8.2e-06     0.012      19     126 .]     272     375 ..     255     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.13
     SpoVT_C  78 saqviaPIiaeGdviGaVill...skeekkklgelekkl 113
                  ++++ P i    +iG ++ll    + ek+++   + kl
  EHT99756.1 200 VSEIALPMILGAASIGLIVLLvqsVEGEKEAIAARQAKL 238
                 578999**************9653222333445555555 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.2e-06
     SpoVT_C  19 hivlitDrdqiiavagaskkell..ekeiskeleklmeerktvlakkeekklvveeekeeysaqviaPIiaeGdviGaVillskeekkklgelekklae 115
                  +v++t + +i+a  g ++ +++  +  is+   ++m++ k+++++++e +      ++++++ +++P+  +G v+G+  +  +  ++ ++ + k++a 
  EHT99756.1 272 DAVAMTNKQKILAYVGYGEHNYQhgDDGISPTTAQAMHSGKIIIKNNDEAHR-----TKDIHSMIVIPLWEKGKVTGTLKIYYRRAHR-ITGSLKEMAV 364
                 46899**********9999999722568**************8877543333.....34789*******************9777665.6777777777 PP

     SpoVT_C 116 taAsFLgkqme 126
                   ++ ++ q+e
  EHT99756.1 365 GLSQIISTQLE 375
                 77888888776 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.17      40      85 ..     491     537 ..     484     570 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
  HATPase_c_2  40 ctNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpd 85 
                  + Na+ h+ + ++ +g v++++++ ++++++ v+D G+g   e +++
   EHT99756.1 491 VENAIVHGIQPCKgKGVVTLSVRDLGDRVRIAVRDTGKGISDEVIDR 537
                  67***********99************************65554444 PP

>> Bac_export_3  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.037        56      49      66 ..     103     120 ..     101     124 .. 0.89
   2 ?    0.4   0.1      0.42   6.2e+02      15      31 ..     139     155 ..     128     160 .. 0.85
   3 ?    6.5   2.9    0.0052       7.8       9      37 ..     196     224 ..     187     226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.037
  Bac_export_3  49 pKllavllvllllgpwml 66 
                   ++++av++  +l+gpw++
    EHT99756.1 103 VRVIAVMAGGILFGPWVG 120
                   699*************87 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.42
  Bac_export_3  15 llsaplllvalvvGlvv 31 
                   + s+p+l+++++ G+v 
    EHT99756.1 139 VTSVPCLMTSIIAGIVA 155
                   5799**********986 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0052
  Bac_export_3   9 alllvlllsaplllvalvvGlvvsifQaa 37 
                   +l++v  +++p++l a  +Gl+v ++Q++
    EHT99756.1 196 GLTIVSEIALPMILGAASIGLIVLLVQSV 224
                   57788899*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4362.24
//
Query:       EHT99757.1  [L=242]
Description: putative response regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-31  107.9   0.5    4.8e-31  106.9   0.5    1.6  1  LytTR         LytTr DNA-binding domain
    2.1e-23   82.6   0.1    3.5e-23   81.9   0.1    1.3  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> LytTR  LytTr DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.5   5.3e-35   4.8e-31       2      96 ..     144     239 ..     143     241 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 5.3e-35
       LytTR   2 riilvplddilyieaeekyvtlvteneeylfrgtLkeleeklppdsffrvhRsylVnlkkikeidrdfngtleltlkn.geklpvSrrylkelkel 96 
                 rii+ +++di+y+ea+ek ++++t +e y + +t++e+ ++lp+  ffr+hRsy+Vnl+ki+ei+++fn+t+ l+l++ + ++pvSr+++k+++ l
  EHT99757.1 144 RIIVTDVNDIYYVEAHEKLTFVYTRREAYVMSMTMTEFCSRLPEHLFFRCHRSYCVNLNKIREIEPWFNNTYLLKLRDmEVQVPVSRSKVKAFRLL 239
                 899******************************************************************************************976 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   3.9e-27   3.5e-23       2     111 ..       4     112 ..       3     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 3.9e-27
                   EEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +iv+D+ l+++ l+ +++ ++++e  a ++dg ++l++l++++vd+i+lDin+p +dG+ l+k i++  +++ ++++ta +e  +avea++++a+d+
    EHT99757.1   4 IIVEDEFLAQQELSWMIQqHSKIEIAACFDDGLDVLKYLQQHRVDVIFLDINIPSLDGMLLAKSIHQFVHKPLIVFITAWKE--HAVEAFELEAFDY 98 
                   7*****************779998888****************************************************997..9************ PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   + Kp+++++++++l
    EHT99757.1  99 ILKPYHESRIITML 112
                   **********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2015.76
//
Query:       EHT99758.1  [L=321]
Description: glucokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-125  418.9   0.0   1.2e-125  418.7   0.0    1.0  1  Glucokinase  Glucokinase


Domain annotation for each model (and alignments):
>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.7   0.0  6.7e-130  1.2e-125       1     315 [.       6     315 ..       6     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 418.7 bits;  conditional E-value: 6.7e-130
  Glucokinase   1 LagDiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpvegdeveltNlpWviseeelakelgleaveli 98 
                  L+gD+GGT+arlal+e+e+++   ++ +++a++dy+sle++++++l+e+++++k+   +++A+A+p+++d+ve+tN++W++s+++l++++g+e++e+i
   EHT99758.1   6 LVGDVGGTNARLALCEVESGS--ISQTKTFATSDYDSLEAVIRHYLDEQKQDIKD---GCIAIACPITDDWVEMTNHDWAFSTKKLKANIGFEHLEII 98 
                  89*******************..99**********************88877777...**************************************** PP

  Glucokinase  99 NDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeevelleilrkklgrvsaErvlSGpGLv 196
                  NDf+ava+aip+l++e+++q+gg+++ +++pia++GaGTGLGv++l++ ++r+v+l++EGGhvdfa++seee ++le+lr++lg+vsaErvlSG+GLv
   EHT99758.1  99 NDFTAVAMAIPMLGEEHVIQFGGKSAVKDKPIAIYGAGTGLGVSHLVHVDQRWVSLPGEGGHVDFAANSEEEDQILEVLREELGHVSAERVLSGAGLV 196
                  ************************************************************************************************** PP

  Glucokinase 197 nlyealaaadkleeellepaeiteaalegedplarealelFlailGsvagdlaLkllargGvyiaGGiapkilellkaseFreafedkgrlselleki 294
                  nly+a+++ d++e+e+l+p e++e+al+++++ +r+al+lF+ i+G++ g+laL+l+++gGvyiaGGi+p++le++kas+Fr+afedkgr+++++++i
   EHT99758.1 197 NLYRAIVKVDNREPENLKPREVSERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFRDYVADI 294
                  ************************************************************************************************** PP

  Glucokinase 295 pvyvvlneeagLlGaaaaaaq 315
                  pvy+++++++gLlGa+a+++q
   EHT99758.1 295 PVYMITHDQPGLLGAGAHLRQ 315
                  ****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2679.68
//
Query:       EHT99759.1  [L=45]
Description: hypothetical protein CKS_3623 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 392.85
//
Query:       EHT99760.1  [L=492]
Description: pyruvate/alpha-keto-acid decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-30  103.5   0.7    9.4e-30  103.5   0.7    1.9  3  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    3.5e-17   62.6   1.8    2.8e-16   59.7   0.0    2.6  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    3.8e-16   59.1   0.0    1.6e-15   57.1   0.0    2.0  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
      0.025   13.4   0.0      0.041   12.7   0.0    1.2  1  XFP_N         XFP N-terminal domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.7   2.1e-33   9.4e-30       2     171 ..       5     178 ..       4     179 .. 0.90
   2 ?   -2.9   0.1         1   4.5e+03     132     149 ..     188     201 ..     183     214 .. 0.53
   3 ?   -3.5   0.1       1.6     7e+03      79     101 ..     411     435 ..     381     447 .. 0.67

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 2.1e-33
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   tv+++l+ +L+a+g++h+fgvpG+ +l++ld++ +++ i +v + +E +aa+aAdgy r +g ++++l+t g+G ++a+++la+ + + + +++++g
    EHT99760.1   5 TVGDYLLARLQACGIRHLFGVPGDFNLQFLDRVIAHPTISWVGCANELNAAYAADGYGRCSG-MAALLTTFGVGELSAINGLAGSFAEYVHVIHIVG 100
                   89***********************************************************8.99999999************************** PP

                   E--CCCHH.....S..TC--T-CCHHHC..CCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEEHH CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqeldqlalfr..pvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevded 171
                    ++++  +     +++l    d  +++r  + ++ a+   ++e++  +++r +     ++++P yl lp dv ++e++++
    EHT99760.1 101 APSSQAMQqgdcvHHTLG-DGDFGHFIRmaKEVNVATAQLTAENATAEIDRVLSSV-IQQHRPGYLLLPVDVAQAETAAP 178
                   **9999887777655555.44666664422455578888899**************.*******************9875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
                   SGGGHHHHHHHHHHHHHS CS
  TPP_enzyme_N 132 speelpealrrAirtals 149
                   s     e lr A+r+a++
    EHT99760.1 188 S----TESLRSAFRQAAE 201
                   3....4455555555532 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.6
                   CHHHHHHHHHH..T--EEEEEEE-- CS
  TPP_enzyme_N  79 altalaeAkvd..riPllvlsgdrp 101
                   +l+a+++A+++  +  ++++ gd +
    EHT99760.1 411 TLPAAFGAQTArpSQRVILIIGDGS 435
                   5666666666644567777777655 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.6     0.059   2.6e+02      25      62 ..      92     126 ..      75     203 .. 0.74
   2 !   59.7   0.0   6.3e-20   2.8e-16       5      89 ..     384     467 ..     380     480 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.059
                   TTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTG CS
  TPP_enzyme_C  25 gglgtmGyglpaAiGaklakpdrevvaivGDGgflmil 62 
                   ++++ + +g p + +++       v  + GDG+f + +
    EHT99760.1  92 YVHVIHIVGAPSSQAMQQG---DCVHHTLGDGDFGHFI 126
                   5566666666666666664...3677888888887753 PP

  == domain 2  score: 59.7 bits;  conditional E-value: 6.3e-20
                   HHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHH CS
  TPP_enzyme_C   5 ltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtg 89 
                     + aa l ++    ++l + ++g++Gy+lpaA Ga+ a+p+++v+ i+GDG+ + ++qel  + r +   ++++lnNegy   +
    EHT99760.1 384 AAFGAAAL-RLPAGAQLLVQPLWGSIGYTLPAAFGAQTARPSQRVILIIGDGSAQLTIQELGSMLRDDQHPIIFLLNNEGYTVER 467
                   55533333.666678889999************************************************************8766 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.94   4.2e+03      59      81 ..      92     113 ..      86     115 .. 0.75
   2 !   57.1   0.0   3.5e-19   1.6e-15       3     119 ..     199     315 ..     197     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.94
                   EEEESGGGSCHHHHHHHHH-SEE CS
  TPP_enzyme_M  59 ylgmlglhgskaanealeeaDlv 81 
                   y++++ ++  ++ ++a+++ D+v
    EHT99760.1  92 YVHVIHIV-GAPSSQAMQQGDCV 113
                   55566665.67788999999998 PP

  == domain 2  score: 57.1 bits;  conditional E-value: 3.5e-19
                   HHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                   +a  ll+ a+r+ +l++  ++r + + +l++l     +P++t lmgkgv++e+ p ++g ++g  +  ++++ +eeaD+ l++G+rf+d+ t+g  +
    EHT99760.1 199 AAERLLAPAQRVSLLADFLAQRWQQQPALAALRAGRAFPCATLLMGKGVLDEQQPGFVGtYAGEGSEGPVRQQIEEADVTLCVGVRFTDTITAGFTQ 295
                   45578999*********************************************************************************99999888 PP

                   TTTTT-EEEEEESSCCCCTTC CS
  TPP_enzyme_M  99 efapeakiihididpaeigkn 119
                   +f p+ ++i +++ +a++  +
    EHT99760.1 296 QFRPD-RLIDVQPHSASVAGQ 315
                   99998.9***99999887655 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.2e-06     0.041     140     171 ..     406     437 ..     404     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.2e-06
       XFP_N 140 GelGyalshayGavldnPdlivacvvGdGeae 171
                 G +Gy+l  a+Ga   +P++ v+ ++GdG a+
  EHT99760.1 406 GSIGYTLPAAFGAQTARPSQRVILIIGDGSAQ 437
                 789**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.33
# Mc/sec: 4501.31
//
Query:       EHT99761.1  [L=329]
Description: aldo-keto reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-68  230.8   0.0    2.2e-68  230.6   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.6   0.0   1.2e-72   2.2e-68       2     293 ..      28     328 ..      27     329 .] 0.94

  Alignments for each domain:
  == domain 1  score: 230.6 bits;  conditional E-value: 1.2e-72
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH.-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY..gkgqseellGealkk.srkkreeviiatKv..dlrdaeiksglskenireslees 93 
                   + lG+w+ +++  ++ +++ +llr+a+++Gi++fD+A+ Y   +g++e ++G+++ +  ++ r+e+ii+tK   +++ +++ + +s++ +++sl++s
    EHT99761.1  28 ISLGLWHNFGD-STQLATSRQLLRHAFDCGITHFDLANNYgpPPGSAESNFGRIMRDdFQAHRDELIISTKAgyTMWEGPYGDWGSRKYLVASLDQS 123
                   889******98.****************************8879****************************8888888888899999********* PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka...kkkkkvkivavqveynllreleeegllelckkkgvpli 187
                   l+r+g+dyvD+++ Hrpdp++p +ee+++al+++v++Gk+ + ++Sn+++e+  +a   +++ +++  + q +y+l+++  e+gll+++ ++g ++i
    EHT99761.1 124 LRRMGLDYVDIFYHHRPDPETP-LEETMRALDHVVRQGKALYAAISNYPAERAAEAmtiLRDLGTPCLIHQPRYSLFERTPEQGLLQTLDEHGTGCI 219
                   **********************.**************************99999999**************************************** PP

                   EBSTTGGGTTGTTTSS---SSSCCC-------.....TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG- CS
  Aldo_ket_red 188 aysplggGlltgkyqseedkedkeprkdlkrd.....ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel 279
                   a+spl+gG lt +y +  + ++  +  +   +     + t++++ ++++l++la+++g +laq+al ++l  p+ ++v++gas+ +q++d ++ l  
    EHT99761.1 220 AFSPLAGGVLTDRYLQGIPSDSRVASGS---KflnenQLTEEKMARVRKLNDLAEQRGQKLAQMALTWVLRDPRITSVLIGASKTAQIDDAVQMLTQ 313
                   ***************9988876554432...124567**********************************************************66 PP

                   .---HHHHHHHHHHH CS
  Aldo_ket_red 280 .klseeevaeldell 293
                    +ls++e+a+++++l
    EHT99761.1 314 sPLSTDELAAIEAIL 328
                   6***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2803.91
//
Query:       EHT99762.1  [L=64]
Description: hypothetical protein CKS_3620 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-12   47.8  11.8    4.3e-12   46.2  11.8    1.7  1  DUF2502   Protein of unknown function (DUF2502)


Domain annotation for each model (and alignments):
>> DUF2502  Protein of unknown function (DUF2502)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2  11.8   2.4e-16   4.3e-12       1      56 [.      16      59 ..      16      64 .] 0.88

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 2.4e-16
     DUF2502  1 sidllPgislhlGdrdkrGnyWdGydWrdrqyWkdhkgahlgernergyewdgnrW 56
                +i l+Pg+ lhlGdrd+rG+yWdG +Wr++++++d+            y ++++rW
  EHT99762.1 16 EIRLAPGVTLHLGDRDRRGYYWDGDHWREPRWFNDR------------YAYKERRW 59
                5899******************************99............67777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 563.62
//
Query:       EHT99763.1  [L=53]
Description: hypothetical protein CKS_3619 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 522.04
//
Query:       EHT99764.1  [L=176]
Description: O-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-26   92.3   0.0    2.8e-26   92.0   0.0    1.1  1  Methyltransf_3   O-methyltransferase
    7.7e-17   62.2   0.0    1.4e-16   61.4   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
      9e-12   45.2   0.0    1.1e-11   44.9   0.0    1.1  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    5.5e-08   32.7   0.0    7.2e-08   32.4   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    1.7e-06   28.7   0.0      3e-06   27.9   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    6.5e-05   23.5   0.0    9.9e-05   22.9   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
     0.0012   18.5   0.0     0.0021   17.8   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0021   18.0   0.0     0.0026   17.7   0.0    1.1  1  Methyltransf_18  Methyltransferase domain
     0.0042   16.8   0.0     0.0046   16.7   0.0    1.1  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.036   13.7   0.0       0.05   13.2   0.0    1.1  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
       0.12   13.2   0.0       0.18   12.6   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
       0.16   10.5   0.0       0.18   10.3   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
       0.18   11.2   0.0       0.22   10.8   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
       0.18   11.6   0.0       0.21   11.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
       0.18   11.4   0.0       0.25   11.0   0.0    1.2  1  CmcI             Cephalosporin hydroxylase


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   2.3e-29   2.8e-26      23     135 ..      41     148 ..      29     154 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2.3e-29
                     ST.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHT CS
  Methyltransf_3  23 ktdlsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvk 117
                     + +l+   vs+ +g++L lL+++ na rvleiG+  Gys + +a+al e G i++i+ d+ ++++a++ i++ag+ e++ l++  al vL +l  
      EHT99764.1  41 QAGLPAHDVSAMQGKMLALLISIQNASRVLEIGTLGGYSTIWMAQALGEGGTITTIEADPRHAQVARENIHQAGLSERVRLHVEAALDVLPHLQ- 134
                     45688999**********************************************************************************9984. PP

                     SSS---EEEEEE-S-GGG CS
  Methyltransf_3 118 dkklpefDfifvDaDkss 135
                         + fD+if+DaDk+ 
      EHT99764.1 135 ----APFDLIFIDADKKI 148
                     ....46**********85 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   1.2e-19   1.4e-16       1      78 [.      70     145 ..      70     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.2e-19
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealaslaagsiDllfiDgg 78 
                      +EiG+  G+st+w+++al + g+  +++++ dp   ++a++are    agl++rvrl+++ + ++l++l+  ++Dl+fiD++
       EHT99764.1  70 LEIGTLGGYSTIWMAQALGEGGT--ITTIEADP---RHAQVAREnihqAGLSERVRLHVEAALDVLPHLQ-APFDLIFIDAD 145
                      7********************96..9*****99...555555555555**********************.*********98 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   9.1e-15   1.1e-11      60     157 ..      51     151 ..      17     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 9.1e-15
                 HHHHHHHHHTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGG.G-SEEEEEESSBBSS- CS
        PCMT  60 hmvalalelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyee.kaPYdaihvgaaapei 155
                  m +++l ll  +++ +rvLe+G+  Gy t  +a+ +ge g++ +ie  ++ ++ a++n+++ +l+ +v ++v       ++ +aP+d i++ a  + i
  EHT99764.1  51 AMQGKMLALLIsIQNASRVLEIGTLGGYSTIWMAQALGEGGTITTIEADPRHAQVARENIHQAGLSeRVRLHVEAALDVLPHlQAPFDLIFIDADKKII 149
                 588889998878****************************************************98788888888777777647**********99999 PP

                 -H CS
        PCMT 156 Pe 157
                 P 
  EHT99764.1 150 PA 151
                 96 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   6.1e-11   7.2e-08       2      81 ..      64     143 ..      63     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.1e-11
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsn 81 
                      +++ rvl++G+  G+ t+ +a+ lg++++++ i+ +++  ++Aren  + gl+ +v+++++ + + l+  l+ ++fDli+ +
       EHT99764.1  64 QNASRVLEIGTLGGYSTIWMAQALGEGGTITTIEADPRHAQVARENIHQAGLSeRVRLHVEAALDvLPH-LQ-APFDLIFID 143
                      56789***********************************************99**************7.46.99****987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.5e-09     3e-06       1      70 [.      69     142 ..      69     151 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.5e-09
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCG.BSSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaed.lpfedgsfDlvvs 70 
                      vL++G+  G  t+++a++lg  +++t ++ +++  + are+++++gl  +v++++  a d lp  ++ fDl+++
       EHT99764.1  69 VLEIGTLGGYSTIWMAQALGeGGTITTIEADPRHAQVARENIHQAGLseRVRLHVEAALDvLPHLQAPFDLIFI 142
                      8******************557*******************************99999776999********98 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   8.3e-08   9.9e-05       1      67 [.      70     142 ..      70     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.3e-08
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCC.TSS-TT-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl..kvefvvadaek.lpfednsfDlvvs 67 
                      L++G+ +G+ + ++a++    +++++++ +++  ++a+e+++++gl  +v+++v+ a + lp   + fDl+++
       EHT99764.1  70 LEIGTLGGYSTIWMAQALgegGTITTIEADPRHAQVARENIHQAGLseRVRLHVEAALDvLPHLQAPFDLIFI 142
                      799************544588***************************9999999999946**********96 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0021      67     120 ..      93     143 ..      83     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
                    EEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE- CS
  Cons_hypoth95  67 avlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflD 120
                    ++ +e d++ +++ +en+++ +l+e+++ ++e al+ l++l   +++fd++f+D
     EHT99764.1  93 ITTIEADPRHAQVARENIHQAGLSERVRLHVEAALDVLPHL---QAPFDLIFID 143
                    689**********************9999999999999999...679******9 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.2e-06    0.0026       7      80 ..      58     132 ..      52     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.2e-06
  Methyltransf_18   7 aiaslvekgsrvaDiGtDHgylpiylvke.gkakkviasDinegplekakeniekagledkievrlsdGleklke 80 
                      a+   +++ srv+ iGt  gy +i++++  g   +++ ++  +   + a+eni++agl++++++++   l++l +
       EHT99764.1  58 ALLISIQNASRVLEIGTLGGYSTIWMAQAlGEGGTITTIEADPRHAQVARENIHQAGLSERVRLHVEAALDVLPH 132
                      5556688999****************9873667788899999**************************9999863 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06    0.0046      32     100 ..      57     125 ..      24     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
       GCD14  32 iimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrD 100
                 +   + +++ s+v+e Gt  g  +  +a++++  G + t+e   + a+ are+ ++ +ls+ v +++  
  EHT99764.1  57 LALLISIQNASRVLEIGTLGGYSTIWMAQALGEGGTITTIEADPRHAQVARENIHQAGLSERVRLHVEA 125
                 45567899**********99999999***********************************99987654 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-05      0.05       3      87 ..      60     144 ..      58     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDa 87 
                      l+  q+  ++l++ +  G  T ++a+ + + gt++ ++a+ + ++   en+++ g+ +   l+++a        ++ fD i +Da
       EHT99764.1  60 LISIQNASRVLEIGTLGGYSTIWMAQALGEGGTITTIEADPRHAQVARENIHQAGLSERVRLHVEAALDVLPHLQAPFDLIFIDA 144
                      667899999*******9***************************************97776776665544445557799999997 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00015      0.18       1      72 [.      70     142 ..      70     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvva 72 
                      LeiG+  G  +  ++++l ++ ++t ++ +p+  + a+e +++ +     ++++ea  +   + ++ fDl+++
       EHT99764.1  70 LEIGTLGGYSTIWMAQALgEGGTITTIEADPRHAQVARENIHQAGLSERVRLHVEAALDVLPHLQAPFDLIFI 142
                      89*************9999**************************98877777777776666666*****985 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.18     285     372 ..      45     128 ..      35     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                      TTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHH CS
  Cys_Met_Meta_PP 285 pqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdD 372
                      p h++ + q k+ + ++s +  s++      +   + + +a+ lG   ++ ++ a   ha++ +e+ ++ag+++  +Rl+v  E + D
       EHT99764.1  45 PAHDVSAMQGKMLALLISIQNASRV-LEIGTLGGYSTIWMAQALGEGGTITTIEADPRHAQVARENIHQAGLSE-RVRLHV--EAALD 128
                      6788888888888888998888885.467889999*************************************66.589986..55555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.22     159     231 ..      63     141 ..      46     149 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
        PrmA 159 vkegeevlDvGtGSGiLai..aaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadviv 231
                 +++ ++vl +Gt  G  +i  a a+ +  +++ +  D+   +va+eN+++ ++++++++++++ l      ++++d+i+
  EHT99764.1  63 IQNASRVLEIGTLGGYSTIwmAQALGEGGTITTIEADPRHAQVARENIHQAGLSERVRLHVEAALDVlphlQAPFDLIF 141
                 678889999999777666631444445578999**********************887765443331224568888885 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.21      10      62 ..      53     116 ..      24     146 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtGillevlre...ngfsvtgvDlspeaveiae........k 62 
                      + k + ll   +  +rvL+iG+  G+ +  +++   +g ++t ++++p+  + a+        +
       EHT99764.1  53 QGKMLALLISIQNASRVLEIGTLGGYSTIWMAQalgEGGTITTIEADPRHAQVARenihqaglS 116
                      445555554467788**********999999773234669999999998666665444444442 PP

>> CmcI  Cephalosporin hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.25      27      90 ..      60     122 ..      43     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
        CmcI  27 liwelkPdliietGiahGGsalfsasllallkskrkvlaidid..ireknrqaieahplasrieli 90 
                 li+ +  + ++e+G+  G s +++a+ l +    + + +i+ d  + +  r++i++  l++r+ l+
  EHT99764.1  60 LISIQNASRVLEIGTLGGYSTIWMAQALGEG---GTITTIEADprHAQVARENIHQAGLSERVRLH 122
                 455566789**************99877665...66666655500556677788777888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1617.03
//
Query:       EHT99765.1  [L=413]
Description: manganese transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-123  412.9  30.1   1.3e-123  412.6  30.1    1.1  1  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.6  30.1  7.1e-128  1.3e-123       1     354 [.      38     380 ..      38     385 .. 0.98

  Alignments for each domain:
  == domain 1  score: 412.6 bits;  conditional E-value: 7.1e-128
       Nramp   1 iatdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlita 99 
                 +at++qaGa++Gy+Llwv+++++++a+l+q +sa+LG++Tgk+lae +r+r+p+++++++w++ae++++atdlae+iGaA++++ll+g++l+ g+++t+
  EHT99765.1  38 FATNIQAGAAYGYQLLWVVVWANIMAMLIQLMSAKLGIATGKNLAEHVRDRFPRPAVWFYWVQAEIIAMATDLAEFIGAALGFKLLLGVSLMQGAVLTG 136
                 69************************************************************************************************* PP

       Nramp 100 vlvllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpgkeslllavgilGatvmphnlflhsslvqerkitidrsekeea 198
                 v ++l+l+l+++g + lE +i +l+l++a ++i+elf+++p+++e+++g+ +Pslp++++++la+g+lGat+mph+++lhs+l+q +   +d +++   
  EHT99765.1 137 VATVLILVLQNRGQKPLELVIGGLLLFVAAAYIVELFFSQPKVSELVTGMALPSLPNADAVFLAAGVLGATIMPHVIYLHSALTQGKS--RDSQAQ--R 231
                 ****************************************************************************************..544555..5 PP

       Nramp 199 lkyeriDtiialivaflinlailivaAavly.sggkdvesledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrl 296
                 ++ +++D++ia+++a+++nla++++aAa+++ sg+  +++l++a+ +L+pllG +aa+++F++ L+aaGlsSt++gtlagq+vm+gf++++i+lw rr 
  EHT99765.1 232 YSSTKLDVAIAMTIAGFVNLAMMATAAAAFHfSGHSGIAELDQAYTTLQPLLG-HAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFINFHIPLWVRRA 329
                 *****************************************************.7*******************************************8 PP

       Nramp 297 itralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMGef 354
                 +t    +vp +ivi+++ ++++   +lv+sqvlls+++ +alipll++t +++lMGe 
  EHT99765.1 330 VT----MVPSFIVIWAGWDPTR---VLVMSQVLLSFGIALALIPLLVFTGNRELMGEA 380
                 88....****************...*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3224.39
//
Query:       EHT99766.1  [L=396]
Description: nucleoside (except guanosine) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-61  207.4  10.7    2.1e-61  207.4  10.7    2.2  2  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin
    8.2e-19   68.0   6.2    8.2e-19   68.0   6.2    4.1  3  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin
    4.2e-06   27.0   7.5    4.2e-06   27.0   7.5    4.4  4  Gate            Nucleoside recognition


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.1      0.19   1.1e+03     127     146 ..     150     164 ..      54     190 .. 0.51
   2 !  207.4  10.7   3.5e-65   2.1e-61       1     207 []     193     393 ..     193     393 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
                     HHHHHHHHGGGGSSS---HH CS
  Nucleos_tra2_C 127 efvayqeLsklkkkgelser 146
                     +f+ay+++      g++s+r
      EHT99766.1 150 NFIAYKDI-----LGKMSQR 164
                     33333332.....2333333 PP

  == domain 2  score: 207.4 bits;  conditional E-value: 3.5e-65
                     HHHHHHHHHHHHHHHHHHHHS---S-..........---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--HHHHHH CS
  Nucleos_tra2_C   1 yllaAsvmsapaalaiskllvPeteesktkkkeekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgsgleelslelilg 95 
                     y++aA v+++++++++ +l++P++ +++++ + ++ ++ ++++e+++e++l+g+++a+++aamli+f+al++ +nal+  +     +++++ +lg
      EHT99766.1 193 YVVAALVLNMFSTFIVLSLINPYRVDNEEDLQLQDLHQGQSFFEMLGEYILAGFRVAIIVAAMLIGFIALISGLNALFDFI----FGITFQGVLG 283
                     89**********************987777799999999******************************************....489******* PP

                     HHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGSSS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHHHHHHHHHH CS
  Nucleos_tra2_C  96 yvfaplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkkkgelserseliatyaLcgFanfssigiqiGglgalaperrkdiaklglkal 190
                     yvf+p+a+++Gvp+ +al+vgs+++tKlv nefva+++L+k++  ++ls+ +e i++++L++Fanfssigi+ G++++l++e+ ++++++glk+l
      EHT99766.1 284 YVFYPFAWVMGVPSGEALQVGSIMATKLVSNEFVAMMDLQKIA--SQLSPNAEGILSVFLVSFANFSSIGIVAGAIKGLNEEQGNVVSRFGLKLL 376
                     *****************************************98..9************************************************* PP

                     HHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_C 191 laGtlasllsAaiaGll 207
                     +++tl+s+lsAaiaGl+
      EHT99766.1 377 YGSTLVSVLSAAIAGLV 393
                     ***************85 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   6.2   1.4e-22   8.2e-19       2      74 .]      10      82 ..       5      82 .. 0.98
   2 ?   -3.4   0.3       2.6   1.5e+04      35      53 ..      87     105 ..      86     112 .. 0.62
   3 ?    0.2   2.9      0.19   1.2e+03      22      54 ..     191     240 ..     173     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.4e-22
                    HHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG CS
  Nucleos_tra2_N  2 GllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvFGsl 74
                     l+v+ ++a+l+S++rk+i++r++i  l+++++lA+f+l+ +ag  ++k+++ ++++ll++a +G++FvFG++
      EHT99766.1 10 ALVVVSVLALLVSHDRKSIRVRYIIQLLVIEIILAWFFLNSEAGLGFVKGFAGFFDHLLKYAAQGTNFVFGNM 82
                    6899*******************************************************************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
                     HHHHHHTSHHHHHHHHHHH CS
  Nucleos_tra2_N  35 lAlfvlktpagrdvfkals 53 
                     lA+f+l++  +  +++al 
      EHT99766.1  87 LAFFFLNVLCPIVFISALI 105
                     6777777766666666555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
                     HHHHHHHHHHHHHHHHHHHT.................SHHHHHHHHHHHH CS
  Nucleos_tra2_N  22 wrtVigglllQfvlAlfvlk.................tpagrdvfkalsd 54 
                      ++V+++l+l+++  ++vl                  +  g+++f++l++
      EHT99766.1 191 PKYVVAALVLNMFSTFIVLSlinpyrvdneedlqlqdLHQGQSFFEMLGE 240
                     56777777777777777777666666666666666665556666555554 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3     0.042   2.5e+02       9      55 ..      38      61 ..       4      89 .. 0.64
   2 !   27.0   7.5     7e-10   4.2e-06       2     110 ..      92     190 ..      91     211 .. 0.90
   3 ?    1.5   0.0     0.057   3.4e+02      46      68 ..     194     216 ..     188     244 .. 0.69
   4 ?    2.8   6.8     0.023   1.4e+02       5     107 ..     253     355 ..     246     360 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.042
        Gate  9 llasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfa 55
                +                     +e ++a++   l+ +a  +++ gfa
  EHT99766.1 38 V---------------------IEIILAWFF--LNSEAGLGFVKGFA 61
                3.....................444555555..55555555555554 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 7e-10
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfap...lgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytp 97 
                 l+++  i+++s+li++l+++ +l ++ + ++ v+++   +g+ ++ +a+ sl++g++++ ++++ +                + + ++ ++  ++++t+
  EHT99766.1  92 LNVLCPIVFISALIGILQHFRILPWVIRGIGTVLSKingMGKLESFNAVSSLILGQSENFIAYKDI-------------LGKMSQRRMYTMAATAMSTV 177
                 678999******************************64444**********************999.............45566667999999999999 PP

        Gate  98 cvatlavivrelg 110
                 +++++++++ +l 
  EHT99766.1 178 SMSIVGAYMTMLQ 190
                 9999999998765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.057
        Gate  46 atvslltgfaakevvvgtlgtly 68 
                 ++++l++++++  +v+++++  +
  EHT99766.1 194 VVAALVLNMFSTFIVLSLINPYR 216
                 56788888888888888774443 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.023
        Gate   5 gpiillasiliwflss..........ssllgrigkllepvfap.lgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfv 92 
                   +++ +++li+ l++          +++lg++   +++v+    g  +  ++   + t ++++e v+ +  +       +++++    ++ +  +++v
  EHT99766.1 253 AAMLIGFIALISGLNAlfdfifgitfQGVLGYVFYPFAWVMGVpSG--EALQVGSIMATKLVSNEFVAMMDLQ-------KIASQLSPNAEGILSVFLV 342
                 44666677777777779999*9999999999999999999887788..9999999999999988888776533.......3467777777788888888 PP

        Gate  93 llytpcvatlavivr 107
                 ++++  +++++++++
  EHT99766.1 343 SFAN--FSSIGIVAG 355
                 8888..777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2832.33
//
Query:       EHT99767.1  [L=253]
Description: nucleotidyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-05   24.6   0.0    9.1e-05   22.7   0.0    1.9  2  NTP_transf_2  Nucleotidyltransferase domain
     0.0016   18.5   0.0     0.0036   17.4   0.0    1.5  1  Polbeta       Polymerase beta, Nucleotidyltransferase
  ------ inclusion threshold ------
      0.043   12.5   0.0       0.09   11.4   0.0    1.2  1  DUF3352       Protein of unknown function (DUF3352)


Domain annotation for each model (and alignments):
>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.5e-08   9.1e-05      16      48 ..      42      81 ..      31     116 .. 0.77
   2 ?   -1.4   0.0      0.48   2.9e+03      28      46 ..     188     206 ..     183     229 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.5e-08
                  EEEEEHHHHCTTSCTT.SSEEEEEEESTTCHHH.......H CS
  NTP_transf_2 16 kvvlfGSyarGtalkg.SDiDllvvlpeevsre.......k 48
                  +++l+GS+a Gta +g SD+D+++v++++   +        
    EHT99767.1 42 SLWLYGSVAFGTAVEGqSDLDVCLVFRHPLA-PatrdslaA 81
                  689************************9932.244444442 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.48
                   SCTTSSEEEEEEESTTCHH CS
  NTP_transf_2  28 alkgSDiDllvvlpeevsr 46 
                   ++ +SD D   +l e+vsr
    EHT99767.1 188 LRQDSDADWPATLAEHVSR 206
                   4556999988888887775 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     6e-07    0.0036      12      52 ..      39      83 ..      33     106 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6e-07
                HHHSTTEEEEEE-S----.--EEEEEEEESS-...--HHHHHHHH CS
     Polbeta 12 eielaylFGSrakgkare.eSDiDlavllkek...ldleeelela 52
                ++  ++l+GS+a g+a e +SD+D++++++      + +  + ++
  EHT99767.1 39 DLHSLWLYGSVAFGTAVEgQSDLDVCLVFRHPlapATRDSLAAVK 83
                67789*********999779*********9995443333333333 PP

>> DUF3352  Protein of unknown function (DUF3352)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.5e-05      0.09     330     426 ..      18     111 ..      13     123 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.5e-05
     DUF3352 330 npplsqlleqllarlqsslgldldkdifsWmdGEfalallpssnkgagwlfvaetsdrsaaeatlakLDeiakaqgfsvsslelggqkvtaWtkltt 426
                 +p+++  ++ +l +l+ ++g dl +    W+ G  a++   + +++ ++ +v++++  +a+  +la + e+++a+   vs++++++ ++++   +++
  EHT99767.1  18 QPAFQAIVDDTLHQLRLTVGDDLHS---LWLYGSVAFGTAVEGQSDLDVCLVFRHPLAPATRDSLAAVKERLTARHPVVSKIDVDKGTLSEVMDPNN 111
                 5777888999999999999999988...8*********88877**********************************************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1875.95
//
Query:       EHT99768.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-23   81.2   0.0    9.9e-23   80.5   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.2e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
    3.9e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    3.1e-06   26.7   5.1    4.4e-06   26.2   0.3    2.9  3  HTH_33        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.8   0.2      0.061   13.8   0.2    1.4  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.054   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   4.4e-26   9.9e-23       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 4.4e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99768.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + ++++++ +s 
  EHT99768.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETIIRNHQCSSM 316
                 *9.9******************************98887776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99768.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99768.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99768.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT99768.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99768.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99768.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT99768.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.3     2e-09   4.4e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -3.5   0.1       3.7   8.3e+03      25      33 ..     314     322 ..     314     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99768.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99768.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.7
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99768.1 314 SSMWQLLKK 322
                 689****96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99768.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99768.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99768.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT99768.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99768.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2376.51
//
Query:       EHT99769.1  [L=298]
Description: quinolinate phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-58  197.5   0.2    1.7e-58  197.2   0.2    1.1  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
    8.3e-26   89.9   0.0    3.9e-24   84.5   0.0    2.8  3  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.062   13.1   0.0    1.7  1  Biotin_lipoyl_2  Biotin-lipoyl like
        0.1   11.6   0.2       0.15   11.1   0.2    1.2  1  IMPDH            IMP dehydrogenase / GMP reductase domain
       0.14   12.1   0.0       0.24   11.3   0.0    1.3  1  DUF816           Baculovirus protein of unknown function (DUF


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   0.2   4.6e-62   1.7e-58       1     169 []     130     294 ..     130     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.2 bits;  conditional E-value: 4.6e-62
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevlea 99 
                 +At  +r+v+ ++++++++ldTRkt+Pglr + kyAvl+GGg+nhrlgLsd++lik+nhi+a gsi++a++++ +  ++   +evevesl+elee+l+a
  EHT99769.1 130 VATEVSRYVALLEGTQTQLLDTRKTLPGLRTALKYAVLCGGGSNHRLGLSDAFLIKENHIIASGSIRQAIEKAFWLYPDVP-VEVEVESLKELEEALAA 227
                 8****************************************************************************9996.***************** PP

                 T-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C 100 eadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                  adiimLDnfs + +++av+    +++r l+evSG+vt+ +++++a++gvd++svgalt++v+alD+s++
  EHT99769.1 228 AADIIMLDNFSLQAMREAVK---ITAGRALLEVSGNVTETTIRDIAETGVDYVSVGALTKHVRALDLSMR 294
                 ********************...568899***************************************95 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   1.1e-27   3.9e-24       4      89 .]      43     128 ..      41     128 .. 0.97
   2 ?   -1.0   0.0      0.53   1.9e+03      24      53 ..     184     216 ..     179     224 .. 0.60
   3 ?    1.7   0.0     0.074   2.6e+02      45      72 ..     236     262 ..     218     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1.1e-27
                 --HHHHHHGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHH.TTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N   4 gDlttealipeekkakaeiiakeegvvaGlevaeevfell.pglevellvkDGervekgdvlleieGnarallsaERvaLnllqrlS 89 
                 +D+t+ +l+p++ +a+a++i++e+gv++G  ++eevf++l  +++ +++v+DG++v + + l+e+ G+ar ll+aER+ Ln++q lS
  EHT99769.1  43 RDITA-QLLPADSRAHAQVITREAGVFCGKRWVEEVFNQLgAHTALTWHVEDGQHVIPDQPLFEVDGPARLLLTAERTTLNFVQTLS 128
                 79***.9*********************************8888999*************************************998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.53
                 ESSSEEE-.SH..HHHHHHHHHHTTTEEEESS- CS
   QRPTase_N  24 akeegvva.Gl..evaeevfellpglevellvk 53 
                  ke+ ++a G   +++e+ f l+p++ ve++v+
  EHT99769.1 184 IKENHIIAsGSirQAIEKAFWLYPDVPVEVEVE 216
                 455555551432256666777778888887766 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.074
                 TTEEEESS-TT-EEETTEEEEEEEEEHH CS
   QRPTase_N  45 glevellvkDGervekgdvlleieGnar 72 
                 +++ +++ ++  ++++g  lle++Gn+ 
  EHT99769.1 236 NFSLQAM-REAVKITAGRALLEVSGNVT 262
                 5555555.89999************985 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.062      15      37 ..      88     110 ..      85     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
  Biotin_lipoyl_2  15 qlnVkdGqrVkaGdvLaelDsra 37 
                      +++V+dGq+V   + L+e D +a
       EHT99769.1  88 TWHVEDGQHVIPDQPLFEVDGPA 110
                      69******************775 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.1e-05      0.15      99     173 ..     211     280 ..     185     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
                 E-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  99 vgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvG 173
                 v+v+ ++l+++++ ++a +d++++d      + + eavk    ++  +  ++Gnv t+  +++++e+g+d v vG
  EHT99769.1 211 VEVEVESLKELEEALAAAADIIMLDNFS--LQAMREAVKITAGRA--LLEVSGNV-TETTIRDIAETGVDYVSVG 280
                 566667788899999999*******754..444455555444444..5679***8.6789**************9 PP

>> DUF816  Baculovirus protein of unknown function (DUF816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.7e-05      0.24      18      74 ..     183     240 ..     175     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.7e-05
      DUF816  18 lidkaellv.anvleivekaidkykeePtdknykylkklfdkikylideidekdferr 74 
                 li+++++++ + +++ +eka   y + P +++ + lk+l + +    d i   +f  +
  EHT99769.1 183 LIKENHIIAsGSIRQAIEKAFWLYPDVPVEVEVESLKELEEALAAAADIIMLDNFSLQ 240
                 9*****996379**************************99988888888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2120.14
//
Query:       EHT99770.1  [L=160]
Description: N-acetylmuramoyl-L-alanine amidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-29  101.6   0.0    4.4e-29  101.5   0.0    1.1  1  Amidase_2  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   2.5e-33   4.4e-29      19     126 .]      29     143 ..       2     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.5e-33
                 HHHHHHHHHSHHHHTTTS..S-SEEE-SSSSEEESS-TTCEESSSSS......EHCHHGEEEEEESSTTEEESCHHHHHHHHHHHHHHHHHHHHTEEEG CS
   Amidase_2  19 agalavaaaeyaastngs.igyhylidkdGtiyqlvdengrawHagd......kggNdnsigIElvgngdgkeppteaqyealakLvaallkrygippd 110
                 +g+l + a++y+a++++  + +h++i++dG+i+q+v++++rawHag       +++Nd sigIEl+g+    ep+teaqy+al +++++ll++y ++p+
  EHT99770.1  29 TGTLPADAHPYFAEIAHLrVAAHCFIRRDGEIVQYVPFDKRAWHAGIsqfegrENCNDFSIGIELEGTD--IEPYTEAQYAALHQVTQTLLAHYPLTPA 125
                 4555567889998877773449**********************************************7..**************************98 PP

                 GGEEEHHHH...TB-TTCT CS
   Amidase_2 111 rrvvgHsdi...rktdPgp 126
                 r ++gHsdi   rktdPgp
  EHT99770.1 126 R-ITGHSDIapgRKTDPGP 143
                 8.*****999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1260.91
//
Query:       EHT99771.1  [L=345]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-97  324.2   0.0    8.5e-97  324.0   0.0    1.0  1  DDE_Tnp_IS66    Transposase IS66 family
    2.5e-16   59.6   0.1    7.7e-16   58.0   0.1    1.9  1  DDE_Tnp_IS66_C  IS66 C-terminal element


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.0   0.0  9.5e-101   8.5e-97       2     281 ..       9     294 ..       8     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 324.0 bits;  conditional E-value: 9.5e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99771.1   9 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKMHTDDIPVPVQEPGSGKTRTARLWVYVRD 105
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99771.1 106 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 201
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99771.1 202 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 294
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   8.6e-20   7.7e-16       1      39 []     301     338 ..     301     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 8.6e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99771.1 301 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 338
                     9************************9.************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2677.46
//
Query:       EHT99772.1  [L=352]
Description: protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  126.0   0.1    2.3e-36  125.3   0.1    1.4  1  Peptidase_S9    Prolyl oligopeptidase family
    1.8e-35  122.5   0.0    2.2e-35  122.2   0.0    1.1  1  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
  ------ inclusion threshold ------
      0.095   11.3   0.5       0.46    9.1   0.0    2.1  2  AXE1            Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.1   3.8e-40   2.3e-36       3     117 ..     236     352 .]     234     352 .] 0.97

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 3.8e-40
                   --.HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE- CS
  Peptidase_S9   3 fs.selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpv 98 
                   fs s+l+ll drG+v++ +++rG+g+ G++++d g+  ++ n+f+Dfi+++ +l+++g+  ++rl+++GgS+GG+l+ga++n +p l++++va+vp+
    EHT99772.1 236 FSvSRLSLL-DRGFVYALVHVRGGGELGQQWYDGGRLLNKMNSFTDFIDVTHELVARGFGHPDRLYAMGGSAGGLLMGAVINLAPTLYHGVVAQVPF 331
                   888899999.*************************************************************************************** PP

                   --CCCHHCSTTS.THH.HCCC CS
  Peptidase_S9  99 vdvlrydsdtdl.lte.eyme 117
                   vdvl++++d+++ lt+ ey+e
    EHT99772.1 332 VDVLTTMLDESIpLTTgEYDE 352
                   *************99999986 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0   3.7e-39   2.2e-35     239     413 ..       6     176 ..       1     177 [. 0.93

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 3.7e-39
                     TSSEEEEEEESSSS--EEEEEEGGGTSS--EEEEESSSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSSSGGGEEEEE--.SSCEEEEEEE CS
  Peptidase_S9_N 239 dgkylfissasgtdtnelyvldlekeskkvlklvdnrfdaeysvehnegdrfliltndgapnfrlvsvdlndpspsewkelvperekvvleeitv 333
                     ++++++i   s+  t+e+ +ld++ +++ ++ ++++r+++eys++h    +f+i++n++++nf l++++  d+s  +w++++p r+ vv+e +++
      EHT99772.1   6 SKQFILIVLDSTN-TSEIQLLDADLPDALPQVFLPRRRGHEYSLDHY-DFTFFIRSNREGKNFGLYRTRYLDES--RWETVIPARDHVVMEDFQL 96 
                     5667777666666.************96666677777777*******.59***********************9..9****************** PP

                     CTTEEEEEEEETTEEEEEEEETTTS-.EEEEEB-SSSSEEEEEE--TT-SEEEEEEEETTCEEEEEEEETTTTCEEEEEE CS
  Peptidase_S9_N 334 fknylvvsyrkdvlsrvqvvdlkngkvllfevplpgvgsvssasgekedselfysfsSfltPstiykldlatgelellke 413
                     f+++lvv++r+++l+++++++ ++g+   ++++ p+++++ +++ + ++s+l+y +sS++tP+t+++ld++tge+++lk+
      EHT99772.1  97 FRDWLVVEERQRGLTSLRQMNWHTGETSGIAFDDPTYVTWLAYNPTPRTSKLRYGYSSMTTPATLFELDMDTGERRILKQ 176
                     *****************************************************************************997 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.051     3e+02      76     125 ..     211     263 ..     187     280 .. 0.72
   2 ?    9.1   0.0   7.7e-05      0.46     155     208 ..     278     332 ..     271     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.051
                 ES.SSSSEEEEEE.EE-TT--..GGGHHHHHHHHHTT-EEEEEE-TTTS..SS CS
        AXE1  76 PkekeeklPavve.fhGYegs..rgeihdllnyaaaGyavvvmdvRGqggese 125
                    ++++ P++v  +  Y +s  +      l     G++++ ++vRG g   +
  EHT99772.1 211 KYYQKGQNPMLVYgYGAYGSSmdADFSVSRLSLLDRGFVYALVHVRGGGELGQ 263
                 456788999888625446555424445678999999**********9985544 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 7.7e-05
                 HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-.SEEEEES-SS CS
        AXE1 155 flDavrlveivaslpevDeeRvavlGasqGGalalavaalekri.kavvadyPfL 208
                 f+D + + + + +  +  ++R+ ++G+s GG l  av  l +++ + vva++Pf+
  EHT99772.1 278 FTDFIDVTHELVARGFGHPDRLYAMGGSAGGLLMGAVINLAPTLyHGVVAQVPFV 332
                 56666666666666667799*********************986378*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2714.49
//
Query:       EHT99773.1  [L=70]
Description: protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-08   33.8   0.0    2.3e-08   33.8   0.0    1.0  1  Peptidase_S9  Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.3e-12   2.3e-08     158     208 ..       2      56 ..       1      60 [. 0.92

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.3e-12
                   -THHHHHHHHHHH..--S-S.EEEEEETTS-SSTTSSHHHH.HHHHHHHHHHHHH CS
  Peptidase_S9 158 ppaealklvaaLq..kkgkn.vlllifpdegHgvgkprakv.eelarllaFlkea 208
                   +++e++k+va+L+  k++++ +ll +++d+gHg++++r+k+ e +a +l F+   
    EHT99773.1   2 QYWEPAKWVAKLRehKTDDTlLLLCTDMDSGHGGKSGRYKAyEGVALELTFIIAL 56 
                   79***********9999999999******************999******99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 589.74
//
Query:       EHT99774.1  [L=222]
Description: DNA exonuclease X [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   58.5   0.0    1.5e-14   54.9   0.0    2.0  1  RNase_T    Exonuclease
  ------ inclusion threshold ------
      0.033   14.1   0.0      0.068   13.1   0.0    1.5  1  QSregVF_b  Putative quorum-sensing-regulated virulence factor


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   1.7e-18   1.5e-14       2     165 .]       4     147 ..       4     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 1.7e-18
                 EEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESSH CS
     RNase_T   2 viDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgflr 100
                 viD+Et gl+ +    ++e+a + +  g+  i ++++++v p+++  ++ ++++++ it +m+ ++p +++++++ +   +  a +vahna+fd     
  EHT99774.1   4 VIDTETCGLQGG----VVEVASVDVIDGQ--IVNPMSDLVSPDRP--ISRQAMAVHRITEAMVMGKPPIEDAITRYH---G-SAYYVAHNASFDR---- 86 
                 8*********96....9************..9999**********..***********************9888544...4.6789****99984.... PP

                 HHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS....TSSHHHHHHHHHHHH CS
     RNase_T 101 aadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr....aHrAldDaeataklf 165
                     r+l + ++   + ++t++l+++  ++ ++ ++++l+++l+le +      aHrAl+D+  ta+l+
  EHT99774.1  87 ----RMLPE-MA--GDWICTMTLARQLWPGIKY-GNQALRHSLKLEVTPPadlhAHRALYDCYVTAALL 147
                 ....55444.33..5789**************7.*************9988999************986 PP

>> QSregVF_b  Putative quorum-sensing-regulated virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.6e-06     0.068      12      35 ..     174     200 ..     169     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-06
   QSregVF_b  12 kmPFGkYkgrllidlPee...YlvWfa 35 
                  +PFGkY+g++l+ +  +   Yl W+ 
  EHT99774.1 174 VLPFGKYRGQVLAVIARKdpgYLKWML 200
                 58**********999875556999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2011.13
//
Query:       EHT99775.1  [L=76]
Description: DNA polymerase III, theta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-38  129.9   0.4    2.1e-38  129.8   0.4    1.0  1  DNA_pol3_theta  DNA polymerase III, theta subunit
      3e-05   23.8   1.4     0.0002   21.1   0.2    2.5  2  DUF3283         Protein of unknown function (DUF3283)
    0.00059   19.8   0.2     0.0011   18.9   0.2    1.5  1  GlgS            Glycogen synthesis protein


Domain annotation for each model (and alignments):
>> DNA_pol3_theta  DNA polymerase III, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.4   3.5e-42   2.1e-38       1      70 []       2      71 ..       2      71 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 3.5e-42
  DNA_pol3_theta  1 klNLaelskeemdkinvdlaasgvafkERynmPVvaeqvereqPeaLreYFreRlayyReeskklsrlpy 70
                    ++NLa ls+ee+dk+nvdlaa+gvafkERynmPVvae+v+ eqPeaLr++Fr+Rl++yR++s +lsrlpy
      EHT99775.1  2 SHNLALLSQEEKDKVNVDLAAAGVAFKERYNMPVVAEMVASEQPEALRDWFRQRLMHYRQASLNLSRLPY 71
                    69******************************************************************98 PP

>> DUF3283  Protein of unknown function (DUF3283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   3.4e-08    0.0002       1      60 [.       4      60 ..       4      61 .. 0.80
   2 ?    0.6   0.1     0.086   5.1e+02       1      12 [.      65      76 .]      65      76 .] 0.88

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.4e-08
     DUF3283  1 NLslLpaeeknkieLDkqAsFlvwklkqakagpeaiteqleklrdeaekalfeqsvekYk 60
                NL+lL++eek k+++D  A+ +++k +        ++e  ++ ++ea +++f+q +  Y+
  EHT99775.1  4 NLALLSQEEKDKVNVDLAAAGVAFKERYN---MPVVAEMVASEQPEALRDWFRQRLMHYR 60
                9**********************996654...4445555555577899999999888886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.086
     DUF3283  1 NLslLpaeeknk 12
                NLs Lp e k k
  EHT99775.1 65 NLSRLPYEPKQK 76
                9*****998875 PP

>> GlgS  Glycogen synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   1.9e-07    0.0011      12      62 ..      18      68 ..      15      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.9e-07
                HHHHHHHHHHHHHHT----HHHHHHH--TTHHHHHHHHHHHHHHHHHHH-S CS
        GlgS 12 FDFLarsFaRmhaeGrrvDidavtGnmdeahraWFckRYalYckqelqvkk 62
                 D  a   a  +    +v  + v     ea r WF++R  +Y++ +l++ +
  EHT99775.1 18 VDLAAAGVAFKERYNMPVVAEMVASEQPEALRDWFRQRLMHYRQASLNLSR 68
                5555666666666667777888999999****************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 601.53
//
Query:       EHT99776.1  [L=124]
Description: hypothetical protein CKS_1801 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-25   90.0   0.9    1.9e-25   89.7   0.9    1.1  1  CopC      CopC domain
    2.1e-05   25.2   0.5    3.3e-05   24.5   0.5    1.4  1  Big_5     Bacterial Ig-like domain
  ------ inclusion threshold ------
      0.046   13.8   0.0      0.071   13.1   0.0    1.2  1  Wzt_C     Wzt C-terminal domain
      0.052   13.7   0.1       0.36   11.0   0.0    2.3  3  Big_8     Bacterial Ig domain
      0.085   12.7   0.0       0.19   11.6   0.0    1.6  1  FlgD_ig   FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> CopC  CopC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.9   5.4e-29   1.9e-25       1      92 []      28     123 ..      28     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 5.4e-29
        CopC   1 HaalvsstPaagatvaaapeevtLtFsepvel..skvkvtdpdgke...evetvdaktveaelkvplp.elaaGtYtVewrvvsaDGHpvsGsfsFtv 92 
                 Ha+l+ss Paa+a+++ ap+++tL+F+e+ve+  s vkv+d++ k+   ++   ++k+ +++l+v+++ +l++G+Y+V+w+v+s DGH+++G+++Ftv
  EHT99776.1  28 HAHLTSSVPAAKAEISPAPQQITLNFTEDVEPafSGVKVVDAQHKTiagKI--SRDKARHNQLRVNFAqPLTQGAYQVNWHVLSVDGHKTNGNYTFTV 123
                 *******************************************98898744..3333334555555555577*************************8 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.5   9.2e-09   3.3e-05       6      83 ..      30     105 ..      27     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 9.2e-09
       Big_5   6 tvvstsPadgatgvavnaeitvtFseavdastvtaatvialsdsettavtgs.ydasgktvtitpsaeLaanttYtvti 83 
                 +++s++Pa++a+  ++ ++it++F+e+v+++ +  ++v   ++ +t+a ++s  +a  +++ ++ +++L+ +  Y+v+ 
  EHT99776.1  30 HLTSSVPAAKAEISPAPQQITLNFTEDVEPAFSGVKVVD--AQHKTIAGKISrDKARHNQLRVNFAQPLT-QGAYQVNW 105
                 589*********99******************9888666..56666666666557777***********5.55677765 PP

>> Wzt_C  Wzt C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.071      38     117 ..      49     118 ..      46     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
       Wzt_C  38 ikvkahedvedpvfgfaikdrngqevfgtntelekksfeleelkagervevefefklpLapGeYlltvaledrdgeene.i 117
                 i++++ edve    g+ + d ++ ++ g+ +   +      +    ++++v f +  pL++G Y ++  + + dg +++ +
  EHT99776.1  49 ITLNFTEDVEPAFSGVKVVDAQHKTIAGKIS---R------DKARHNQLRVNFAQ--PLTQGAYQVNWHVLSVDGHKTNgN 118
                 78999*****9999**************755...2......23556778888888..7*********99998888765554 PP

>> Big_8  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.36      55      77 ..      36      58 ..      26      69 .. 0.91
   2 ?   -0.8   0.0      0.48   1.7e+03      51      72 ..      70      92 ..      58      99 .. 0.64
   3 ?   -0.4   0.1      0.36   1.3e+03      61      73 ..     110     122 ..      80     124 .] 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
       Big_8 55 viakakvdpgtgtirytFTdyve 77
                  aka+++p+ ++i++ FT+ ve
  EHT99776.1 36 PAAKAEISPAPQQITLNFTEDVE 58
                579******************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.48
       Big_8 51 sngnviakakvdpg.tgtirytF 72
                +++++ +k + d++  +++r+ F
  EHT99776.1 70 QHKTIAGKISRDKArHNQLRVNF 92
                44555556666665245577777 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.36
       Big_8  61 vdpgtgtirytFT 73 
                 vd  + +  ytFT
  EHT99776.1 110 VDGHKTNGNYTFT 122
                 3333344566666 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.19      43      74 ..      94     124 .]      81     124 .] 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                 EESSSEEEEEEE-SB-TTS-B--SEEEEEEEE CS
     FlgD_ig  43 gaqsaGvvsftWdGtdndGnkladGaYtvkvt 74 
                 ++  +G ++++W+    dG+   +G+Yt++v+
  EHT99776.1  94 QPLTQGAYQVNWHVLSVDGH-KTNGNYTFTVK 124
                 56789**************9.689******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1017.03
//
Query:       EHT99777.1  [L=291]
Description: copper resistance protein D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   73.2  10.1    1.9e-20   73.2  10.1    3.1  3  CopD      Copper resistance protein D


Domain annotation for each model (and alignments):
>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4      0.58     1e+04      93     101 ..      11      19 ..       3      33 .. 0.52
   2 ?   -0.7   8.4       0.1   1.8e+03       3      51 ..      38     100 ..      36     171 .. 0.77
   3 !   73.2  10.1   1.1e-24   1.9e-20       2     104 ..     185     284 ..     184     285 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.58
        CopD  93 vlalvvlll 101
                 + + +v++l
  EHT99777.1  11 LHFTAVIVL 19 
                 222222222 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.1
        CopD   3 alrrFsrlalaavavvlvtGvvnallr............vg..lagllttayGrlllaKlall 51 
                 +++r srl++ + ++ l+t + + + +            v+  + + l+t +G ++   l++ 
  EHT99777.1  38 LISRLSRLMTGSAILALLTALCMLAAQtalmsgdwhnlaVPdvWMAVLSTHWGAVWQWQLLFS 100
                 678999999999999999999998777555555555554457778888888886665554443 PP

  == domain 3  score: 73.2 bits;  conditional E-value: 1.1e-24
        CopD   2 ralrrFsrlalaavavvlvtGvvnallrvglagllt.tayGrlllaKlalllvllalaalnrfrlvprleaatgaggqalrhrlrrsaalelvlalvvl 99 
                 r+++rFsr++++ava++lvtG+vn+ll++g++g ++  +y +lll K+al+ +++++a++nr+rlvpr+      +g ++++++ r+ +le+vla++v+
  EHT99777.1 185 RTMMRFSRYGHLAVALTLVTGLVNSLLIAGWPGDWSlNRYVVLLLCKVALVGLMVMIALWNRYRLVPRF----HVAGLGAQQQFIRMTQLEIVLACGVV 279
                 689***************************86666659*******************************....667888888***************** PP

        CopD 100 llaaa 104
                 +l+++
  EHT99777.1 280 GLVSV 284
                 **987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2157.47
//
Query:       EHT99778.1  [L=115]
Description: uncharacterized DUF2511 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-38  130.5   0.0    2.6e-38  130.2   0.0    1.1  1  DUF2511   Protein of unknown function (DUF2511)


Domain annotation for each model (and alignments):
>> DUF2511  Protein of unknown function (DUF2511)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.0   1.5e-42   2.6e-38       1      87 []      26     113 ..      26     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 1.5e-42
     DUF2511   1 tvskleyGe.rWafareevaLdCragnalyainpstlvqYpLndiaeeqaksGkvsaqpidvillddpkdpgqkmslePfveralqLC 87 
                 tvs++e+G+ +W+f+reev+L+C  ++al+ainpstl+qYpLnd+a+ q k G+v+aqpi+vi+  d ++pgq msl+P+v+ra++LC
  EHT99778.1  26 TVSRFEIGKeKWPFNREEVMLTCEKDGALFAINPSTLMQYPLNDKADAQFKAGQVKAQPISVIQAPDKAHPGQMMSLQPIVDRAQALC 113
                 7*******99****************************************************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 961.54
//
Query:       EHT99779.1  [L=152]
Description: hypothetical protein CKS_1798 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-31  106.8   0.0    9.7e-31  106.6   0.0    1.0  1  MEKHLA    MEKHLA domain
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.018   15.1   0.0    1.5  1  PAS_8     PAS domain


Domain annotation for each model (and alignments):
>> MEKHLA  MEKHLA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   1.1e-34   9.7e-31       3     138 ..       9     143 ..       7     145 .. 0.94

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 1.1e-34
      MEKHLA   3 laqlllqSYrrltgkeLlessesaeelakaLfe.apfavlshslkadpvfnyaNqaaldllettweeltdlpsrksaepeekeeRealLekvaeqgfve 100
                 l + + + Yr ltg+ L    e+ ++  ++L e ap  +l+h+ +adpvf+yaN+ ald+++++++e+ +lpsr+sa p++++eR+ lL++v+++g+++
  EHT99779.1   9 LLKRIDDRYRMLTGNGLYCP-EHVADRYRWLHEdAPYSILAHNREADPVFVYANRCALDCFHYSLAEMLQLPSRLSAGPADRAERQGLLDSVRRNGIAT 106
                 56778889*********988.5677789****99***************************************************************** PP

      MEKHLA 101 nysGvrisstGrrfsienavvWkvldeegkahGqAamf 138
                  ysG r++++G  f+i ++ vW+  +e+++ +GqAa+f
  EHT99779.1 107 GYSGPRVNKQGETFTIYEGEVWQ-SEEHEADWGQAALF 143
                 ***********************.68899*******99 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     2e-06     0.018       2      47 ..      34      80 ..      33     102 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-06
       PAS_8  2 rlralfesspdgiavvd..lgdrivdvNqaalellGysadlkgellg.q 47
                r+r l e +p +i+  +  ++  +v++N+ al+ ++ys  l ++l    
  EHT99779.1 34 RYRWLHEDAPYSILAHNreADPVFVYANRCALDCFHYS--LAEMLQLpS 80
                67777788999999766533348***************..666554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1374.30
//
Query:       EHT99780.1  [L=514]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-49  167.4  28.2    2.3e-48  164.3  17.3    3.0  2  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
    2.4e-15   56.6   3.8    2.4e-15   56.6   3.8    3.3  4  4HB_MCP_1  Four helix bundle sensory module for signal transd
  ------ inclusion threshold ------
      0.039   14.0   0.5      0.039   14.0   0.5    3.5  3  COG2       COG (conserved oligomeric Golgi) complex component
      0.049   13.3   0.3        0.3   10.8   0.1    2.1  2  Yip1       Yip1 domain
      0.073   13.3   0.1      0.073   13.3   0.1    2.4  2  MapZ_EC1   MapZ extracellular domain 1


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   3.0   0.00087       3.1     114     170 ..     258     311 ..     222     315 .. 0.69
   2 !  164.3  17.3   6.4e-52   2.3e-48       4     172 .]     327     481 ..     324     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00087
                 HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 114 qrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                  +      lv+e +++  +++ a++e+a+  +e+++ +e+q+a+++e++ ++e++++
  EHT99780.1 258 AKLRG---LVSEIKQTSGNVALAAEEIAQGNTELSSRTEQQAAALQETAASMEQLTA 311
                 44433...4445555556778888999999999999999999999999999998765 PP

  == domain 2  score: 164.3 bits;  conditional E-value: 6.4e-52
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH....... CS
   MCPsignal   4 aeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkei 102
                 a+e+ e A++g+  v+ + ++m++i+ s+++i di+ Vi++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsa aakei++li       
  EHT99780.1 327 ARETAELARSGESDVHRMSETMNDISLSAAKIRDITGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSATAAKEIKSLI------- 418
                 7889999*************************************************************************************....... PP

                 .......HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 103 ndsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                        e+++++v +g++ ++ tge++ +iv++v+++a+ ++ei+ as+eq ++i++v+ av+++++vt
  EHT99780.1 419 -------EQAVEQVGSGVKVANGTGESILKIVSMVGDLASAMDEISLASAEQMQGISQVSVAVSQMDSVT 481
                 .......99**********************************************************996 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   3.8   6.6e-19   2.4e-15       2     177 ..       1     182 [.       1     186 [. 0.90
   2 ?    0.7   0.6     0.091   3.3e+02      73     111 ..     295     333 ..     278     351 .. 0.81
   3 ?   -1.9   0.1      0.57     2e+03     127     167 ..     379     419 ..     376     427 .. 0.63
   4 ?   -3.4   0.1       1.7     6e+03      33      57 ..     473     497 ..     461     506 .. 0.49

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 6.6e-19
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieelea...eidkllek 97 
                 +ki+++L+ +f+ll+llli+  +v+l+sl++++ +++++++ ++ + + + ++   lr+l +++++l l +d +e++  l+++++ +a   ++ + le 
  EHT99780.1   1 MKISTRLAKGFGLLILLLILCTAVSLTSLHHAKTGMDDVVNSKMRKYQLILDMCGGLRDLAIAVRNLALLTDDKEMQPELQRLNTQKAlfiQNRETLET 99 
                 8**********************************************************************************9999844466777788 PP

   4HB_MCP_1  98 yektilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvd...lnlkvAeeaykdn 177
                  ++   t+eE+  l+ + e  +  +++   + +l  +++++eA +++ t +rp  +++ +al++  d   + + +A e++ ++
  EHT99780.1 100 MMQNQSTAEEQAALNHIRELEAPMMASFVTAGQLGLKNEQTEATRYLMTTLRPLQRNMLDALNKATDilmYSSRNAVEVNSQS 182
                 888889*******************************************************9987661115566666666555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.091
   4HB_MCP_1  73 dkaekdellkdieeleaeidkllekyektilteeEkell 111
                 + a  +e+++++e+l a + ++++    t lt++E   l
  EHT99780.1 295 QAAALQETAASMEQLTATVKSNTAGAQTTALTARETAEL 333
                 455678888889999999999998888888888886655 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.57
   4HB_MCP_1 127 kvlelakegkkdeAyqlyetegrparekliealeelvdlnl 167
                  ++e+a++g++ + +++++ e+r+ ++   +a++e+  l +
  EHT99780.1 379 AAVEAARAGEQGRGFAVVAGEVRTLAQRSATAAKEIKSLIE 419
                 56788888888888888888887655555555554443333 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.7
   4HB_MCP_1  33 inknletmYedrllpikdlgeikan 57 
                 + ++++++ +++   +++ ++++++
  EHT99780.1 473 AVSQMDSVTQNNAALVEESSSASQS 497
                 4444444444444444444444333 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3         2   7.3e+03      95     110 ..      93     108 ..      74     121 .. 0.49
   2 ?   14.0   0.5   1.1e-05     0.039      55     120 ..     244     310 ..     233     318 .. 0.83
   3 ?    1.7   1.3      0.07   2.5e+02      72     114 ..     443     485 ..     403     510 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
        COG2  95 reeeveskleeakele 110
                 ++e++e  +++++ +e
  EHT99780.1  93 NRETLETMMQNQSTAE 108
                 2333333333333333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
        COG2  55 adFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeake.leekrellklll 120
                 +d  sl ++L g+q++l+ + s+++++  +v  + e++++  +e++s+ e++++ l+e+ ++++ l 
  EHT99780.1 244 HDTTSLLASLDGMQAKLRGLVSEIKQTSGNVALAAEEIAQGNTELSSRTEQQAAaLQETAASMEQLT 310
                 555677899***************************************9987651555567777665 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.07
        COG2  72 eevesplaaarkkvesvreklsereeeveskleeakeleekre 114
                   +  +la+a+++++ + ++  + +++v+  +++  +++++++
  EHT99780.1 443 VSMVGDLASAMDEISLASAEQMQGISQVSVAVSQMDSVTQNNA 485
                 5566778888888888888888888888888888888777663 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19   6.7e+02      20      40 ..       9      29 ..       2      55 .. 0.69
   2 ?   10.8   0.1   8.3e-05       0.3      52     104 ..     177     229 ..     124     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
        Yip1 20 rapdlallllalltlllglla 40
                + ++l +lll+l t+++++ +
  EHT99780.1  9 KGFGLLILLLILCTAVSLTSL 29
                456777777777777776655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.3e-05
        Yip1  52 eevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkqtlsvv 104
                 e  ++ t+ + ++ +++++l +ll+++   +++ +++++lgg++  +q+l+++
  EHT99780.1 177 EVNSQSTSRASVTLVLLAVLSVLLSVATGYVITRVLMRQLGGEPAQAQALAAA 229
                 44566778888889999999999*********************999999876 PP

>> MapZ_EC1  MapZ extracellular domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     2e-05     0.073       4      87 ..     102     184 ..      99     189 .. 0.91
   2 ?   -1.9   0.4       1.1   3.8e+03       5      42 ..     293     330 ..     285     341 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
    MapZ_EC1   4 ekassqeskkekkalkafekeyaafftddketflknsefaklseLekkLeklkgskeYkklkkkldslkkqisaieavNsqFtk 87 
                 +++s++e++++ +++ ++e  + a f+++ +  lkn++++ +  L++ L  l+ +   ++l+k  d l    +   +vNsq t+
  EHT99780.1 102 QNQSTAEEQAALNHIRELEAPMMASFVTAGQLGLKNEQTEATRYLMTTLRPLQRNM-LDALNKATDILMYSSRNAVEVNSQSTS 184
                 678889999999999*************************************9766.8**********9999999999998666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
    MapZ_EC1   5 kassqeskkekkalkafekeyaafftddketflknsef 42 
                 ++++++ ++++++++++  ++++    ++ t l + e+
  EHT99780.1 293 EQQAAALQETAASMEQLTATVKSNTAGAQTTALTARET 330
                 44445555555555666666555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2073  (0.115623); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 3742.60
//
Query:       EHT99781.1  [L=64]
Description: hypothetical protein CKS_1796 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 484.90
//
Query:       EHT99782.1  [L=377]
Description: acyltransferase 3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-24   87.1  24.5    1.5e-24   86.7  24.5    1.1  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.35   11.4   0.0    1.9  2  XPG_N          XPG N-terminal domain


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7  24.5   1.7e-28   1.5e-24       3     338 ..      10     351 ..       8     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1.7e-28
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Acyl_transf_3   3 ylDllRgiAillVvflHaliayspdagrgspiqasqssqiaflggfgvplFFllSGffla.........amlyrrrglsklikrRilrll.iplli 88 
                    +l++lRgiA l+V ++H++ ++    +               + g+gv+lF+llSG+++a           + ++ + +k++ rR++r++ + +l+
     EHT99782.1  10 ELEGLRGIASLWVLLGHISLLIHCHITLL------------SSPGIGVDLFILLSGYLMAknyverqekEPWQSPETIKKFWLRRFFRIApLYYLL 93 
                    699*****************987777776............889**********************************************988888 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  89 wllliillialvaghiqanasanvtlfdet................kglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllil 168
                     ++++i   +++    +     + t  d+                 ++   +   f++t + W++ +++++yll+p+++ ++++++   +ll++++
     EHT99782.1  94 LAVALISGPWFGEMRDTIAHVYSGTATDASryadqslmnvvthfsfLFGVLPAYGFNTTLPDWSIGLEMQFYLLFPFIMLAVMRFGYAPALLCIMA 189
                    88888888888777777766777777777799*************9999999**********************************9999999988 PP

                    xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 169 lllls..lvfirhelfgpatsvgllplpsvlallfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslll 262
                    l +    l+  ++e f+ +  ++ +       l +f++G+lla a +r++ l     ++l+  +++++++l a+ +q       a++ i++a++l+
     EHT99782.1 190 LSCAGryLLPDYYEAFERPSMILIK-------LNMFISGMLLAEAVRRRSLL--YVVFALAGPVVSVFIGLGAIKLQV---VMEALMIIGMAAVLW 273
                    7666511444556667777777776.......*****************888..667777777777777777777777...667888888888888 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 263 vslgimllllllfalpsrsafkllrylgkiSygiYliHlpllmllqkllrdwgln...lgevlllvlllvvsvivsvvl 338
                          l  +l  + ++  +++l  +lg+ S+++Yl+Hl+++     ll  + ++   ++ v+ +++++ vs+ +++ l
     EHT99782.1 274 QYQENSLMARLIQLPRKVLNNRLSTWLGDVSFSVYLLHLLIVIPAIALLLKQ-TDiayQSDVTRFLIVCAVSLPLTYGL 351
                    8887788888777777777777****************99988888888888.23568889***********9998866 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.35       2      75 ..      16      88 ..      15      92 .. 0.80
   2 ?   -2.5   0.0      0.79   7.1e+03      62      84 ..     134     154 ..     117     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                --TTHHHHHHHH-GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS....-HHHHHHHHHHHHHHHTTEEE CS
       XPG_N  2 GikgLlkllkevaairsvsiealegkklaiDaslwlyrfliavreqlgnalen....tshlmglfsrllrlldfgikP 75
                Gi +L+ ll ++ ++ + +i  l+ + +++D  ++l+  l+a+++ + +++e     +      ++++    +f+i P
  EHT99782.1 16 GIASLWVLLGHISLLIHCHITLLSSPGIGVDLFILLSGYLMAKNYVERQEKEPwqspE-----TIKKFWLRRFFRIAP 88
                9************999****************************99999888743343.....334443334555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.79
                 HHHHHHHHHTTEEEEEEE--S-- CS
       XPG_N  62 fsrllrlldfgikPifVFdgkap 84 
                 +  ++    fg+ P + F+   p
  EHT99782.1 134 VTHFSF--LFGVLPAYGFNTTLP 154
                 333333..478888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3044.98
//
Query:       EHT99783.1  [L=109]
Description: multidrug efflux system transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-26   91.6   4.4      5e-26   91.2   4.4    1.1  1  Multi_Drug_Res  Small Multidrug Resistance protein
  ------ inclusion threshold ------
      0.012   15.8   9.0      0.016   15.4   9.0    1.2  1  EamA            EamA-like transporter family


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   4.4   5.5e-30     5e-26       2      93 .]       8      99 ..       7      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 5.5e-30
                    X-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  2 nwvllvlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglali 93
                    ++ +l+lA+lle++++i+Lk+s+gf+k  p +  + +++++f+ Ls+a+k +++svAYa+w G+G v++v++g +lfg++l+ k+++glal+
      EHT99783.1  8 HFAWLALAVLLEIAANIMLKYSNGFKKPLPGIASLGCVLLAFSALSQAVKGINLSVAYALWGGFGLVATVAAGGILFGQRLNRKGWAGLALL 99
                    5679**************************************************************************************96 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   9.0   1.7e-06     0.016      66     135 ..      36     106 ..       6     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
        EamA  66 lllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 l  + +l +++laf+++ +a+k ++ s+a  +   +  v t+  + +l+g++l+ k ++g++l llG +++
  EHT99783.1  36 LPGIASLGCVLLAFSALSQAVKGINLSVAYALwGGFGLVATVAAGGILFGQRLNRKGWAGLALLLLGMVML 106
                 3366677799*******************999899*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 823.98
//
Query:       EHT99784.1  [L=114]
Description: multidrug efflux system transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-24   84.6   8.0    5.9e-24   84.6   8.0    1.3  1  Multi_Drug_Res  Small Multidrug Resistance protein
    0.00051   20.2   5.7    0.00056   20.1   5.7    1.0  1  UPF0060         Uncharacterised BCR, YnfA/UPF0060 family
     0.0054   16.9  10.9     0.0061   16.7  10.9    1.1  1  EamA            EamA-like transporter family
  ------ inclusion threshold ------
        1.8    8.2   6.7        2.5    7.7   5.9    1.7  1  Wzy_C           O-Antigen ligase
        5.7    7.5   7.5         96    3.5   7.5    2.4  1  DUF202          Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   8.0   1.6e-27   5.9e-24       2      92 ..       3      93 ..       2      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 1.6e-27
                    X-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH CS
  Multi_Drug_Res  2 nwvllvlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglal 92
                    +w ll+lAi++e++g++ +k+s+  ++    l+++ ++++s+++Ls+a+k + ++vAYa+w+GiG++li+l+++ lf+e++s  k+ gl++
      EHT99784.1  3 AWGLLALAIVAEIMGTLTMKWSSLNQSQSGYLIMLGMIACSYIFLSFAIKRIALGVAYALWEGIGIMLITLFSVHLFDETVSPLKICGLVT 93
                    699************************************************************************************9975 PP

>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   5.7   1.6e-07   0.00056       7     104 ..       6     104 ..       1     107 [. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
     UPF0060   7 lfllaalaeigGay.lvwlwlreaksvllalvaaillavygfla.tlqpaafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalialvGvlvily 103
                 l+ la +aei G+  + w  l +++s +l +++ i+ + y fl+ +++  a G +ya + G+ ++l  l+ + + + ++  + + G +  +vG+l++  
  EHT99784.1   6 LLALAIVAEIMGTLtMKWSSLNQSQSGYLIMLGMIACS-YIFLSfAIKRIALGVAYALWEGIGIMLITLFSVHLFDETVSPLKICGLVTLIVGILLMKT 103
                 567899******96378999999999888888777765.6666427888*********************999999999***************99866 PP

     UPF0060 104 a 104
                 +
  EHT99784.1 104 G 104
                 5 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  10.9   1.7e-06    0.0061      42     135 ..       6     101 ..       1     103 [. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
        EamA  42 gillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                  ++l i+a + +      ++l++++  +l+ lg   +++ ++++  a+k++  ++a  +   +  ++++++sv l+ e+++ ++++g+v  ++G+ll+
  EHT99784.1   6 LLALAIVAEIMGTLTmkwSSLNQSQSGYLIMLG--MIACSYIFLSFAIKRIALGVAYALwEGIGIMLITLFSVHLFDETVSPLKICGLVTLIVGILLM 101
                 334444444444444411244555555555555..578999***************999899**********************************97 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.9    0.0007       2.5      12      66 ..      26      86 ..      17     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0007
       Wzy_C 12 lstsRsgiigl..lvalivlliifykrri....pfllllgilvgvilliilfvlstnletl 66
                l +s sg++ +  ++a+ ++++ f  +ri    +++l+ gi +++i+l+ + +++++   l
  EHT99784.1 26 LNQSQSGYLIMlgMIACSYIFLSFAIKRIalgvAYALWEGIGIMLITLFSVHLFDETVSPL 86
                57899999999788888888999999999****9*********9*****999877776655 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.5     0.027        96      18      55 ..      42     101 ..       3     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.027
      DUF202  18 lalialglallrffl.......................tgepsalgkilglilivlgiltl 55 
                 ++ i+l++a+ r+ l                       ++ +s+l ki+gl+ +++gil++
  EHT99784.1  42 CSYIFLSFAIKRIALgvayalwegigimlitlfsvhlfDETVSPL-KICGLVTLIVGILLM 101
                 566677777777666667777777888888878888666666664.9***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 890.83
//
Query:       EHT99785.1  [L=560]
Description: choline dehydrogenase, a flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-102  341.4   0.0   1.5e-101  339.7   0.0    1.7  2  GMC_oxred_N    GMC oxidoreductase
    3.8e-41  141.0   0.0    5.6e-41  140.4   0.0    1.2  1  GMC_oxred_C    GMC oxidoreductase
    0.00044   19.5   0.1       0.42    9.6   0.0    2.2  2  FAD_binding_2  FAD binding domain
     0.0014   18.3   0.1        0.4   10.2   0.1    2.8  3  DAO            FAD dependent oxidoreductase
     0.0055   15.8   0.0     0.0082   15.2   0.0    1.2  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.061   12.5   0.0    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.012   15.8   0.1      0.035   14.3   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.17   11.1   0.1       0.34   10.1   0.1    1.5  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.7   0.0  6.7e-105  1.5e-101       1     295 [.       3     300 ..       3     301 .. 0.99
   2 ?   -1.1   0.0      0.42   9.5e+02     166     184 ..     457     482 ..     410     487 .. 0.58

  Alignments for each domain:
  == domain 1  score: 339.7 bits;  conditional E-value: 6.7e-105
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl...imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtp 95 
                  +d++++g+Gsag+v+A+RL+ed s +vl+leagg +++++   +m++ala++l+ k++n+ayetepe+ +n+rr+ + +Gk+lGG+s++N+++yiR++
   EHT99785.1   3 FDYIIIGAGSAGNVLATRLTEDSSVNVLLLEAGGPDYRFDfrtQMPAALAYPLQGKRYNWAYETEPEPYMNNRRMECGRGKGLGGSSLINGMCYIRGN 100
                  69************************************9999******************************************************** PP

  GMC_oxred_N  96 aadldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcGvcllgv.tcrtgarq 192
                  a dld+W++  gle ws+ ++lp+++k+et++++ +d+hg dg+++vt+  k ++ l++a+++a+ ++G+p ++dlng +q+G++ +++ ++++g+r+
   EHT99785.1 101 AMDLDNWASMPGLENWSYLDCLPYYRKSETRDTGANDYHGGDGPVSVTTPKKGNNVLFEAMIQAGVQAGYPRTDDLNGYQQEGFGPMDRfVTPEGRRS 198
                  ************************************************************************************************** PP

  GMC_oxred_N 193 starawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGk 289
                  star +L++a +rpnl+i+t+a++++i++e  +kra+GVe+   ++++ ++v+a++ev+++aGa++sPq+LqrSG+G  e L+++++ vv+dlp vG 
   EHT99785.1 199 STARGYLDQAKRRPNLKIVTHATTDRILFE--GKRAIGVEYMIGDSNTLHTVHARREVLLCAGAIASPQILQRSGVGSSELLQQFDIPVVHDLPgVGG 294
                  ******************************..****************************************************************** PP

  GMC_oxred_N 290 nLqdHp 295
                  nLqdH+
   EHT99785.1 295 NLQDHL 300
                  *****8 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.42
  GMC_oxred_N 166 p.....vprdlngk..hqcGvcllgv 184
                  +     ++r+ ++   h+cG c +g+
   EHT99785.1 457 DeeldeFVRNHGETayHPCGTCKMGN 482
                  14555667777777779999999984 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.0   2.5e-44   5.6e-41       3     144 .]     393     527 ..     391     527 .. 0.92

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 2.5e-44
                  --EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STC CS
  GMC_oxred_C   3 srGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadp 100
                  srG+v+l+s+dp+++p+i +ny+s+++d+   ++a++ +r+i++++al       ++g  e ++  + ++de+l++fv+++ +t +Hp+Gtc+MG+d+
   EHT99785.1 393 SRGHVRLKSRDPRRHPAILFNYMSHEQDWHEFRDAIRITREIINQPAL-----DKYRG-REISPGIECQTDEELDEFVRNHGETAYHPCGTCKMGNDE 484
                  9*********************************************53.....22333.35566669999999**********************988 PP

                  GCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C 101 kdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  + +VVD ++rvhg+++LrVvDaS++P ++++n ++t+++++ek+
   EHT99785.1 485 M-TVVDGEGRVHGLEGLRVVDASIMPLIITGNLNATTIMIGEKI 527
                  8.****************************************96 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00019      0.42       1      32 [.       4      36 ..       4      39 .. 0.91
   2 !    7.6   0.0   0.00077       1.7     148     204 ..     205     263 ..     184     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeq 32
                   D i+iG+G AG + A++++e    +v+++e ++
     EHT99785.1  4 DYIIIGAGSAGNVLATRLTEDSSvNVLLLEAGG 36
                   88******************8888*****9886 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00077
                    HHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 148 vesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirak.avvlatgGfgr 204
                    +++a++++ +++ +++  d+++ e++r+ G++ +  +s + ++++a+  v+l +g++  
     EHT99785.1 205 LDQAKRRPnLKIVTHATTDRILFEGKRAIGVEYMIGDSNTLHTVHARrEVLLCAGAIAS 263
                    5667677789************************99*******************9987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00018       0.4       1      29 [.       4      35 ..       4      40 .. 0.91
   2 ?    4.4   0.0     0.011        24     147     207 ..     199     266 ..     156     287 .. 0.77
   3 ?   -0.9   0.0      0.41   9.3e+02      65      99 ..     457     488 ..     447     515 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
                EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29
                d +iiG+G +G   A  L++     V+lle+g
  EHT99785.1  4 DYIIIGAGSAGNVLATRLTEDSsvnVLLLEAG 35
                789***************9997799*****98 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHTT.-EEEESECEEEEEEEETCEEEEE....EECT.EEEEEEEE.EEE--GGGHH.HH CS
         DAO 147 kltaalaraaealG.veilegtevtgleeedgkvwgve....rttp.gendaada.vVnaaGawsd.ll 207
                   +++++++a+++   +i+++++  ++  e++++ gve    + +  ++++a +  v ++aGa ++ ++
  EHT99785.1 199 STARGYLDQAKRRPnLKIVTHATTDRILFEGKRAIGVEymigDSNTlHTVHA-RReVLLCAGAIASpQI 266
                 5678899999888548*****8888887788999999999963333344444.446******9887644 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.41
                 HHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHH CS
         DAO  65 leelreleeelgididyrrtGllslaadeeeleal 99 
                  eel+e+ +++g ++ y+++G+  ++ d  e+  +
  EHT99785.1 457 DEELDEFVRNHG-ETAYHPCGTCKMGND--EMTVV 488
                 589999**9998.599******999865..35555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.6e-06    0.0082       1      33 [.       4      35 ..       4      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.6e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   D ++iGaG Ag  lA rl  +   ++v+l+ea+
     EHT99785.1  4 DYIIIGAGSAGNVLATRL-TEDSSVNVLLLEAG 35
                   789***************.67889*******97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.061       1      32 [.       3      35 ..       3      52 .. 0.89
   2 ?   -0.2   0.0      0.21   4.7e+02     189     250 ..     205     272 ..     187     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
                 CSEEEE--SHHHHHHHHHHHH.HTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.agakvtlvele 32
                 +d+++iG+G AG  +a++l + ++++v+l+e++
   EHT99785.1  3 FDYIIIGAGSAGNVLATRLTEdSSVNVLLLEAG 35
                 589******************88******9855 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.21
                  HHHHHHHTTEEEEESCEEEEEEETTE...EEEEEETTSCE....EEESEEEE-S-EEES-HHCSHCCT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgnge...klevvledgee....idadlvvvavGvrpstelleeklgl 250
                  l +a ++ + +++++++  +i  +g+    +e+  +d ++     + + v++++G  +s+++l +++g+
   EHT99785.1 205 LDQAKRRPNLKIVTHATTDRILFEGKraiGVEYMIGDSNTlhtvHARREVLLCAGAIASPQIL-QRSGV 272
                  3444444488888888888888888877777777777777677445567999*******9999.87776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.6e-05     0.035       1      28 [.       7      35 ..       7      37 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekr 28
                   I+GaG +G v+A +L+++  ++vllle++
     EHT99785.1  7 IIGAGSAGNVLATRLTEDsSVNVLLLEAG 35
                   9****************8899******86 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00015      0.34      16      49 ..       1      34 [.       1      36 [. 0.94

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailer 49
                +e D +i+GaGs+G   a  l+++  ++v++le+
  EHT99785.1  1 MEFDYIIIGAGSAGNVLATRLTEDSSVNVLLLEA 34
                6889***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4333.04
//
Query:       EHT99786.1  [L=490]
Description: betaine aldehyde dehydrogenase, NAD-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-177  590.8   0.1   1.7e-177  590.6   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.6   0.1  9.5e-182  1.7e-177       2     462 .]      16     479 ..      15     479 .. 0.98

  Alignments for each domain:
  == domain 1  score: 590.6 bits;  conditional E-value: 9.5e-182
                 ET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHH CS
      Aldedh   2 veses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlr 98 
                 v+++s et+++inP++gev+a+v+ a++edvd+avaaA++ +k wa+++a+eR++iLr+a d+l+er++elaele+l+tGkp++e++  ++   +dvl+
  EHT99786.1  16 VAATSgETFQTINPVNGEVLADVQIAGREDVDRAVAAARKGQKIWAAMTAMERSRILRRAVDILRERNDELAELEMLDTGKPFSETASvDIVTGADVLE 114
                 56666588******************************************************************************************* PP

                 HHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHH CS
      Aldedh  99 yyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevg 197
                 yya+l+  leg+ +p +++++ ++rrePlGvv+ I +WN+P+ +a+wk apalaaGN++++KP+e tpl+al+lae++ eag+P+gv+nv++g+g+ +g
  EHT99786.1 115 YYAGLIPALEGQQIPLRDTAFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLPGTGAVTG 213
                 ****************88********************************************************************************* PP

                 HHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 198 ealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 + l+ehp++dkvsftG++  g+k++++ a+++lk vt+ElGGk+pli+++daDld a++ ++++ f+++GQvC++++r++v+  +  +f +k+ve++++
  EHT99786.1 214 QLLTEHPGIDKVSFTGGVVSGKKVMANaAGSTLKDVTMELGGKSPLIIFDDADLDLAADIAMMANFYSSGQVCTNGTRVFVPAALQSAFEAKIVERVAR 312
                 ***************************66699******************************************************************* PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 +k gd +d++t++GPl+s +++++v++++e++++ega+ll+Gg+  + +g ++g++v+Ptv++++++dm+i++eEiFGPV+s++++ +eee+i+ aNdt
  EHT99786.1 313 IKAGDLRDPETNFGPLVSFSHRDNVMRFIESGIAEGARLLCGGKrLTGDGFDQGAWVAPTVFSDCRDDMKIVREEIFGPVMSILSYTSEEEVIRRANDT 411
                 ********************************************9889*************************************************** PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 eyGLaag++t+dl+ra+rv++++eaG ++iN++ ++aae+ p+gG+k+Sg+Gre+g   l++yt+vk+v
  EHT99786.1 412 EYGLAAGLVTRDLNRAHRVIHQIEAGICWINTWGESAAEM-PVGGYKHSGVGRENGLMTLQNYTQVKSV 479
                 *********************************9999999.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3824.42
//
Query:       EHT99787.1  [L=197]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-32  110.2   5.5    6.2e-32  110.2   5.5    2.1  3  TetR_C_6   BetI-type transcriptional repressor, C-terminal
    2.6e-13   49.5   0.0    7.2e-13   48.1   0.0    1.8  1  TetR_N     Bacterial regulatory proteins, tetR family
     0.0048   16.7   0.0       0.01   15.6   0.0    1.6  1  LacI       Bacterial regulatory proteins, lacI family
     0.0072   16.5  11.5     0.0074   16.5   4.5    2.4  2  TetR_C_31  Tetracyclin repressor-like, C-terminal domain
     0.0078   16.6  10.9      0.011   16.1   3.0    3.5  3  TetR_C_28  Tetracyclin repressor-like, C-terminal domain
     0.0087   16.8   1.7     0.0087   16.8   1.7    2.3  3  TetR_C_15  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
       0.16   11.8   0.0       0.34   10.8   0.0    1.5  1  HTH_5      Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.6   9.3e+03      53      63 ..      14      24 ..       9      39 .. 0.45
   2 ?    0.2   0.2      0.33   8.5e+02      43      60 ..      61      78 ..      54      85 .. 0.47
   3 !  110.2   5.5   2.4e-35   6.2e-32       1     114 [.      84     192 ..      84     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.6
                HHHHHHHHHHH CS
    TetR_C_6 53 nlrallaelae 63
                ++ a+la + +
  EHT99787.1 14 LIDATLATIND 24
                33334443333 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.33
                HHHHHHHHHHHHHHHHHH CS
    TetR_C_6 43 qrenyarlrsnlrallae 60
                +r+ +++lr+ +++ l+ 
  EHT99787.1 61 MRDVTRQLREAVARRLQP 78
                333344444444444433 PP

  == domain 3  score: 110.2 bits;  conditional E-value: 2.4e-35
                 HHHHHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHH CS
    TetR_C_6   1 prerlraileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalapeelda 99 
                 ++erlrai+e +++ +q +ra +++wl+fw++++++p+l++l r++++rl+s l+ ++++ ++     ++ a++aA++laA+idGLwlraal+ +++d+
  EHT99787.1  84 AEERLRAIVEGNFDESQVERAVMKAWLDFWSSSMHQPQLQRLERVSHRRLFSSLAVEFRRQLP-----RDRARLAAHGLAAMIDGLWLRAALSGKPFDP 177
                 58*************************************************************.....******************************* PP

                 HHHHHHHHHHHHHHT CS
    TetR_C_6 100 eraralvrrhldall 114
                  +ar+l +++++++l
  EHT99787.1 178 TTARTLTTQFIRQQL 192
                 ***********9988 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   2.8e-16   7.2e-13       1      46 [.      14      59 ..      14      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2.8e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                ++da+++ +++ G++ +t+++IA+rAGvs g + +yF++K +Llea
  EHT99787.1 14 LIDATLATINDVGINDATIAQIARRAGVSTGIISHYFKDKNGLLEA 59
                79******************************************98 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     4e-06      0.01       1      36 [.      31      66 ..      31      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4e-06
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHH CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVea 36
                ti  +Ar+AGVS+  +S++ ++k+   e+t   V++
  EHT99787.1 31 TIAQIARRAGVSTGIISHYFKDKNGLLEATMRDVTR 66
                8999*******************7766666665554 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.8     0.016        40      40      75 ..      57      92 ..      55      95 .. 0.84
   2 !   16.5   4.5   2.9e-06    0.0074       6     103 ..      88     186 ..      83     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.016
                HHHHHHHHHHHHHHHHHHHHHHHCS.S-HHHHHHHHH CS
   TetR_C_31 40 LraalarlrralrealaallaalGl.pdpeeaarllv 75
                L a +++  r+lrea+a+ l+ l   p +ee+ r++v
  EHT99787.1 57 LEATMRDVTRQLREAVARRLQPLANaP-AEERLRAIV 92
                78899999*************999956.666887765 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHCCCCCTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH.HHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHSG.TS-HHHHHHHHHH CS
   TetR_C_31   6 ladlladlldraladrertlAryelfleaarrPeLraalarlrralre.alaallaalGlpdpeeaarllvaaldGllldrLagp.aadpraevrellr 102
                 l + ++  +d+   +r+ + A +  +  + ++P+L+++ + + r+l+  +++++ ++l +++++ aa+ l a++dGl l++   +   dp + +r+l +
  EHT99787.1  88 LRAIVEGNFDESQVERAVMKAWLDFWSSSMHQPQLQRLERVSHRRLFSsLAVEFRRQLPRDRARLAAHGLAAMIDGLWLRAALSGkPFDP-TTARTLTT 185
                 45555555666555888888999999999**********999988887356666667777666667888***********9988866666.44444444 PP

                 H CS
   TetR_C_31 103 a 103
                 +
  EHT99787.1 186 Q 186
                 3 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.5   3.9e+03      52      64 ..      27      39 ..      10      42 .. 0.62
   2 ?    1.6   0.1      0.15   3.9e+02      76      94 ..      61      79 ..      54      83 .. 0.75
   3 !   16.1   3.0   4.4e-06     0.011       2      89 ..      86     185 ..      85     190 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.5
                -HHHHHHHHHHHH CS
   TetR_C_28 52 gldpvlatlvrlA 64
                  d+  a+++r A
  EHT99787.1 27 INDATIAQIARRA 39
                3458888888887 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.15
                SS---HHHHHHHHHHHHHT CS
   TetR_C_28 76 lppldpeeraallerLlel 94
                +++++ ++r+a+++rL+ l
  EHT99787.1 61 MRDVTRQLREAVARRLQPL 79
                4667788888888888765 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 4.4e-06
                 HHHHHHHHHHTS-.......-HHHHHHHHHGGGSHHHHHHHHHHHHHHS--TT....GG.-HH..HHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHH CS
   TetR_C_28   2 rftraYlratfde..ee...rallaallaalaedpellepwrewyrrwlerle....ad.gld..pvlatlvrlAadGlwlaellglppldpeeraall 88 
                 +++ra ++  fde   e    +++  +  + +++p+l+++ r  +rr +  l+     +  +d    +a+ + +++dGlwl ++l + p+dp + + l 
  EHT99787.1  86 ERLRAIVEGNFDEsqVEravMKAWLDFWSSSMHQPQLQRLERVSHRRLFSSLAvefrRQlPRDraRLAAHGLAAMIDGLWLRAALSGKPFDPTTARTLT 184
                 6789999999953232234577777788888999999888777777776666633321112221133344456778****************9998886 PP

                 H CS
   TetR_C_28  89 e 89 
                  
  EHT99787.1 185 T 185
                 6 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.4   1.1e+04      25      43 ..      13      31 ..       9      40 .. 0.48
   2 ?    4.0   0.6     0.033        84      37      70 ..      57      91 ..      48      93 .. 0.85
   3 !   16.8   1.7   3.4e-06    0.0087       3      95 ..      85     178 ..      83     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.4
   TetR_C_15 25 rvlleeapslgelelveal 43
                +++ +  ++++ + +++a 
  EHT99787.1 13 QLIDATLATINDVGINDAT 31
                3444444444444444444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.033
   TetR_C_15 37 l.elvealeqriaealaalLarrrpelppedlela 70
                l +  +++ ++++ea+a+ L+  + + ++e+l+ +
  EHT99787.1 57 LeATMRDVTRQLREAVARRLQPLANAPAEERLRAI 91
                5567899999**************99998888876 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 3.4e-06
   TetR_C_15   3 eealdalvdallaahrenpalrrvlleeapslgelelvealeqriaealaalLa.rrrpelppedlelaafvaveaveallhlaleedpadrea 95 
                 ee l+a+v+  ++  + + a+ +++l+ ++s+  +   ++le+  +++l + La ++r +lp ++++laa+ + +++++l  +a++ +  +++ 
  EHT99787.1  85 EERLRAIVEGNFDESQVERAVMKAWLDFWSSSMHQPQLQRLERVSHRRLFSSLAvEFRRQLPRDRARLAAHGLAAMIDGLWLRAALSGKPFDPT 178
                 7999*************************99999999999999888877655552789999*9*****************99999887755544 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.34      15      37 ..      29      51 ..      23      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                SEEHHHHHHHHTS-HHHHHHHHH CS
       HTH_5 15 elcvcelaeelglsqstvShHLk 37
                 +++ ++a+  g+s +++Sh++k
  EHT99787.1 29 DATIAQIARRAGVSTGIISHYFK 51
                6799****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1464.07
//
Query:       EHT99788.1  [L=459]
Description: putative MFS transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-28   97.5  46.1    6.6e-22   77.9  31.2    2.0  2  MFS_1       Major Facilitator Superfamily
    2.5e-07   30.0  30.4      0.021   13.7   0.1    4.0  4  Sugar_tr    Sugar (and other) transporter
    1.3e-06   27.1   2.5    1.3e-06   27.1   2.5    2.2  2  MFS_3       Transmembrane secretion effector
    6.8e-06   25.2  26.4    7.5e-05   21.7   9.8    2.2  2  MFS_1_like  MFS_1 like family
    7.8e-05   22.1  28.1    9.7e-05   21.8  28.1    1.1  1  MFS_4       Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.12   12.0   3.1       0.38   10.5   0.1    2.7  2  Spore_YhaL  Sporulation protein YhaL


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9  31.2   2.2e-25   6.6e-22       3     332 ..      13     320 ..      11     322 .. 0.88
   2 !   33.5   6.8   6.9e-12   2.1e-08      86     179 ..     288     379 ..     286     408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 2.2e-25
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlga 99 
                  +++l+ l++++l++ ++l la+d +++++ ig ++++ ++g +++  ++  l+ r+G+ r +++++ +  ++ +++  + + +  l+++lr++ Gl++
  EHT99788.1  13 TTTLLMLLGSGLLTTYVSLRLAHD-QVNGALIGAIIAANYIGLVIGGKVGHNLIARVGHIRAYVACAGIITAS-VIGHgL-TDFIpLWVFLRLIIGLCM 108
                 678999999999999999977777.689*********************************777777777777.444446.777779************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                  + + +  +++ d +  ++rg+ +g++++++ lG   g ++  l +  +g + + +++  ++l +  + ++l ++++++   ++p e+           
  EHT99788.1 109 MCQYMVLESWLNDQAESSQRGLIFGFYMVATYLGLSSGQVVLTLQS-DFGLQTLLIVALCFALCL--VPIALTTRTHVRAMSPAPMEL----------- 193
                 **************************************99988887.889987766666666666..566999999999999999999........... PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                     l++ p    ll + ll+++++ +++ l p+y  +  g+s   ++g++++l+ ++g+++++ +++lsdr+ r+r l+ + +ll+la+l l+ll+  
  EHT99788.1 194 -GYFLRTIP-K--LLSTTLLTGMVVGAFYGLAPVY-ASSKGFS-DAQTGIFMSLTIFAGLVSQFPLSWLSDRYDRQRLLFYIAALLALACLPLVLLPRL 286
                 .34444444.2..7888888889************.*******.6****************************************************** PP

       MFS_1 298 ssavllllvlvliGfglgfvfpsllalasdlappe 332
                  s +++l + +l+++ ++  +p+  ala+d + +e
  EHT99788.1 287 -SFHWVLGIAFLASMVQFALYPLQVALANDQVAAE 320
                 .****************************998655 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 6.9e-12
       MFS_1  86 w.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepper 179
                 + ++l   +l+++ + al+p+ +al+ d ++ e+r + +++l ++f++Ga +gpll g l++ +g   +++++++ +ll +vl    ++ ++p +
  EHT99788.1 288 FhWVLGIAFLASMVQFALYPLQVALANDQVAAEQRVSLTACLLMAFGIGASIGPLLVGSLMQPFGSNILYLFFTVCTLLIAVL---SYVKKAPLP 379
                 44789999************************************************************************995...444444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3  12.9   3.7e-05      0.11      46     166 ..      41     158 ..      25     179 .. 0.83
   2 !    3.6   2.1    0.0082        24      80     128 ..     162     226 ..     146     229 .. 0.69
   3 !   13.7   0.1     7e-06     0.021      44      90 ..     231     277 ..     225     295 .. 0.78
   4 !   12.0   1.7   2.4e-05     0.071      16      96 ..     294     374 ..     276     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.7e-05
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                  l+g+i ++ ++G +iG+ ++  l+ r+G   +++++a +  ++ +  ++++    + + ++ R+++G+++ +++++   +++  A  + Rg + ++y 
  EHT99788.1  41 ALIGAIIAANYIGLVIGGKVGHNLIARVGHIRAYVACAGIITASVIGHGLTD---FIPLWVFLRLIIGLCMMCQYMVLESWLNDQAESSQRGLIFGFYM 136
                 5799********************************9999999999999998...55666667************************************ PP

                 HHHHHHHHHHHHHHHHHHTSS- CS
    Sugar_tr 145 laitfGilvaaifglglnktsn 166
                 +a+ +G   ++++ +  ++++ 
  EHT99788.1 137 VATYLGLSSGQVVLTLQSDFGL 158
                 ******9999887665555444 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHH-TTTT................SS-TGGGGGHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  80 liaavlfvigavlqaaakgk................nsvevlivgRvlvGigvGlasvlvPmyis 128
                 li+a++f  + v +a+++ +                +++  l+   +l+G+ vG++++l+P+y+s
  EHT99788.1 162 LIVALCFALCLVPIALTTRThvramspapmelgyflRTIPKLLSTTLLTGMVVGAFYGLAPVYAS 226
                 44444444444444444444444666666666666667777777789****************97 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 7e-06
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfviga 90 
                 s+ ++g+++s++++ ++++++ +++l+dr++R+  l  +a+l+  + 
  EHT99788.1 231 SDAQTGIFMSLTIFAGLVSQFPLSWLSDRYDRQRLLFYIAALLALAC 277
                 6789****************************999888666665544 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 2.4e-05
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-T CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaa 96 
                 ++++++++ +  +  +  l + + + e+  +l+  ++ +f +Ga iG l++g l++ fG    +l+++v+++  avl+++ 
  EHT99788.1 294 IAFLASMVQFALYPLQVALANDQVAAEQRVSLTACLLMAFGIGASIGPLLVGSLMQPFGSNILYLFFTVCTLLIAVLSYVK 374
                 4567777777777777777777777777888899999999**********************************9999875 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   9.1      0.68     2e+03     245     396 ..      34     184 ..      16     193 .. 0.76
   2 !   27.1   2.5   4.5e-10   1.3e-06      67     191 ..     255     375 ..     234     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.68
       MFS_3 245 ardqldgdalvyGillgalGvGAilgalllsrLRerlss.erlvllaavalAlvllslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvg 342
                 a+dq++g  +  G +++a  +G ++g+ +   L +r+++  + v++a + +A  ++  +l++ + + v+  l+ G + +  +  l++       +  +g
  EHT99788.1  34 AHDQVNG--ALIGAIIAANYIGLVIGGKVGHNLIARVGHiRAYVACAGIITAS-VIGHGLTDFIPLWVFLRLIIGLCMMCQYMVLESWLNDQAESSQRG 129
                 6777766..45699999999999999999999999988724567778877775.567899999988888889999999999999999988888888899 PP

       MFS_3 343 RalavYltvlaGglaaGsllWGavaealsvtlaLlaa.aaallla.aaillllklp 396
                   +  Y+++++ gl+ G ++  ++ ++ ++++ L++a + al l+  a++++++++
  EHT99788.1 130 LIFGFYMVATYLGLSSGQVVL-TLQSDFGLQTLLIVAlCFALCLVpIALTTRTHVR 184
                 999999999999999999887.5677788888887772344444413344445555 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 4.5e-10
       MFS_3  67 alaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaa 165
                  l+D +dr ++l+ + +llal+ + l++l  l +     +l++++l+++ +    P   A  +++v++++  +  a   + + i  s+GP l G l+  
  EHT99788.1 255 WLSDRYDRQRLLFYIAALLALACLPLVLLPRLSF---HWVLGIAFLASMVQFALYPLQVALANDQVAAEQRVSLTACLLMAFGIGASIGPLLVGSLMQP 350
                 489*******************999998887765...568999999999988889***********9998888888888999999************** PP

       MFS_3 166 vGaalafavnalsylalivallrwkr 191
                 +G+ + + + +++ l  i++l  +k+
  EHT99788.1 351 FGSNILYLFFTVCTLL-IAVLSYVKK 375
                 ************9874.566665554 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   8.6   0.00014      0.43     230     366 ..      11     146 ..       5     151 .. 0.91
   2 !   21.7   9.8   2.5e-08   7.5e-05     230     385 .]     203     359 ..     151     359 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00014
  MFS_1_like 230 fllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfg 328
                 + +++l++   +g++ ++++l L + +  + l+G+++a   ++ ++   ++++l+ ++Gh++  +++  ++++  ++ ++++   l +++ ++ g+++ 
  EHT99788.1  11 LYTTTLLMLLGSGLLTTYVSLRLAHDQVNGALIGAIIAANYIGLVIGGKVGHNLIARVGHIRAYVACAGIITASVIGHGLTDFIPLWVFLRLIIGLCMM 109
                 67889999999*******************************************************999999999******999999999********* PP

  MFS_1_like 329 llwaaaveyvskiapksleatgqgllsglyfglGralG 366
                   ++++ ++ ++ a  s ++ + g++  +++ lG  +G
  EHT99788.1 110 CQYMVLESWLNDQAESSQRGLIFGFYMVATY-LGLSSG 146
                 ************************9976533.444444 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.5e-08
  MFS_1_like 230 fllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii..enawlvlpievLhgis 326
                 +l ++l+ gm++g+++  + +Y +++g+s    G+++ l+ +a ++  f  ++l +++  ++ll+    + +l  l + ++   ++ +vl i +L ++ 
  EHT99788.1 203 LLSTTLLTGMVVGAFYGLAPVYASSKGFSDAQTGIFMSLTIFAGLVSQFPLSWLSDRYDRQRLLFYIAALLALACLPLVLLprLSFHWVLGIAFLASMV 301
                 678899*******************************************************999643333333333333334689999*********99 PP

  MFS_1_like 327 fgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflFra 385
                   +l+   v  +++ +  + +  + + l ++ fg+G  +G l+ G l + +++ +l+ +
  EHT99788.1 302 QFALYPLQVALANDQVAAEQRVSLTACLLMA-FGIGASIGPLLVGSLMQPFGSNILYLF 359
                 99999*************9999999999887.*****************9999998865 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  28.1   3.2e-08   9.7e-05      22     360 ..      35     370 ..      18     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.2e-08
       MFS_4  22 egqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllam....altesfaaflliRflaGvasAvvlvfgsslvlahaaaarre 116
                   q++ + +g + aaNy+G  +G  +     ++  +R++   + +a++  + a+    +lt+ + +++ +R++ G+   +  ++  s+   +a+ ++r+
  EHT99788.1  35 HDQVNGALIGAIIAANYIGLVIGGKVG----HNLIARVGHIRAYVACAGIITASvighGLTDFIPLWVFLRLIIGLCMMCQYMVLESWLNDQAESSQRG 129
                 5566777789999**********9877....788888885556666655555541111678888899*********9988777777888999999**** PP

       MFS_4 117 rvgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYglaGfGYiitatF.. 213
                  + ++      lG   + ++ +l   +gl+     l++a+  a+ l+ +al+++ + ++ + a++e    ++++  ll ++l+ g++     + a +  
  EHT99788.1 130 LIFGFYMVATYLGLSSGQVVLTLQSDFGLQTL---LIVALCFALCLVPIALTTRTHVRAMSPAPMELGYFLRTIPKLLSTTLLTGMV-----VGAFYgl 220
                 ****9999999998766666666666666665...6666666666777777777666777777888877777777777777766654.....3333321 PP

       MFS_4 214 lvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltf..laitalvlqlar.elap 309
                  + +a +++ + +++  + +l+  a +v+ +   ++++r + +r+l  + ++ a++ l  +l+p ++   v ++ + + +  +a  +l ++la  ++a+
  EHT99788.1 221 APVYASSKGFSDAQTGIFMSLTIFAGLVSQFPLSWLSDRYDRQRLLFYIAALLALACLPLVLLPRLSFHWVLGIAFLASMvqFALYPLQVALANdQVAA 319
                 4788999999*****************************999998888777778777777777766655555554444440145555555555525666 PP

       MFS_4 310 patrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaal 360
                 +++  l + + ++fgig  +Gpll++ l++  gs  l l+     l++a+l
  EHT99788.1 320 EQRVSLTACLLMAFGIGASIGPLLVGSLMQPFGSNILYLFFTVCTLLIAVL 370
                 6778999******************************99999999999875 PP

>> Spore_YhaL  Sporulation protein YhaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00013      0.38       1      28 [.      94     123 ..      94     128 .. 0.81
   2 ?    0.9   0.5      0.13   3.8e+02      19      49 ..     417     447 ..     415     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
  Spore_YhaL   1 iPwWvYl..viagIlfSgymavktakeEre 28 
                 iP+Wv+l  +i   +++ ym++++ ++++ 
  EHT99788.1  94 IPLWVFLrlIIGLCMMCQYMVLESWLNDQA 123
                 7*****6537777799*******9998875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
  Spore_YhaL  19 avktakeEreldqefIEkEGevylerleeer 49 
                 a+ t+ eE   d+   E EG+v   r  e r
  EHT99788.1 417 AMVTSDEEGAEDEGENEDEGDVIQARDDESR 447
                 57788999999999999***99877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 2980.94
//
Query:       EHT99789.1  [L=72]
Description: hypothetical protein CKS_1785 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-30  105.6   9.7    1.2e-30  105.3   9.7    1.1  1  DUF1272         Protein of unknown function (DUF1272)
  ------ inclusion threshold ------
       0.02   14.7   0.3       0.02   14.7   0.3    2.4  3  zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
      0.057   12.8   1.6      0.057   12.8   1.6    2.2  2  zf_Rg           Reverse gyrase zinc finger
       0.15   12.0   8.7        1.2    9.2   4.0    2.6  2  zf-C2HC5        Putative zinc finger motif, C2HC5-type
        0.4   10.5  11.0       0.55   10.1  11.0    1.2  1  zf-RING_4       RING/Ubox like zinc-binding domain
        0.8   10.2   5.6        7.5    7.0   1.9    2.4  2  DUF983          Protein of unknown function (DUF983)
       0.91    9.7  10.3       0.68   10.1   6.6    2.3  2  Zn-ribbon_8     Zinc ribbon domain
       0.98    9.4  10.8        3.7    7.6   0.1    3.2  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon


Domain annotation for each model (and alignments):
>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   9.7   5.4e-34   1.2e-30       1      57 []       1      57 [.       1      57 [. 0.99

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 5.4e-34
     DUF1272  1 mLelrpnCecCdkdlppdseearicsyEctFCaeCaeevlenvCPncgGelvkRPir 57
                mLelrpnCe+Cd dlp++s++arics+EctFCa+Cae++l++ CPncgGelv+RPir
  EHT99789.1  1 MLELRPNCERCDIDLPAASRDARICSFECTFCATCAEQHLQGNCPNCGGELVRRPIR 57
                9******************************************************98 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5      0.58   1.3e+03       4       8 ..       8      12 ..       6      16 .. 0.67
   2 ?   -2.7   0.8       2.4   5.4e+03       4       5 ..      32      33 ..      26      40 .. 0.59
   3 ?   14.7   0.3     9e-06      0.02       2      14 ..      42      54 ..      41      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.58
                    -SSS- CS
  zf-C4_Topoisom  4 CPkCg 8 
                    C+ C 
      EHT99789.1  8 CERCD 12
                    77775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.4
                    -S CS
  zf-C4_Topoisom  4 CP 5 
                    C 
      EHT99789.1 32 CA 33
                    44 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 9e-06
                    EE-SSS--EEEEE CS
  zf-C4_Topoisom  2 ekCPkCggdLvlk 14
                    + CP Cgg+Lv++
      EHT99789.1 42 GNCPNCGGELVRR 54
                    78*********98 PP

>> zf_Rg  Reverse gyrase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.18   4.1e+02      11      14 ..       6       9 ..       2      20 .. 0.73
   2 ?   12.8   1.6   2.5e-05     0.057       7      17 ..      41      51 ..      37      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.18
       zf_Rg 11 PNCg 14
                PNC+
  EHT99789.1  6 PNCE 9 
                6664 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.5e-05
       zf_Rg  7 eklCPNCgGdi 17
                +  CPNCgG++
  EHT99789.1 41 QGNCPNCGGEL 51
                678******98 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.3     0.028        62      15      41 ..       3      33 ..       1      34 [. 0.74
   2 ?    9.2   4.0   0.00054       1.2      20      46 ..      29      53 ..      28      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.028
    zf-C2HC5 15 eaapnClnCGkiiCakegls....kpCsfCg 41
                e+ pnC  C   + a+ +       +C+fC+
  EHT99789.1  3 ELRPNCERCDIDLPAASRDAricsFECTFCA 33
                6789999998888777776656668889997 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00054
    zf-C2HC5 20 ClnCGkiiCakeglskpCsfCgsplls 46
                C+ C    Ca ++l+++C+ Cg +l+ 
  EHT99789.1 29 CTFCA--TCAEQHLQGNCPNCGGELVR 53
                67776..5**************99986 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  11.0   0.00024      0.55       1      43 [.       8      47 ..       8      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
   zf-RING_4  1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaC 43
                c+ Cd +l +  +d + C+ ++ +C  C ++   + +g CP+C
  EHT99789.1  8 CERCDIDLPAASRDARICSFECTFCATCAEQ---HLQGNCPNC 47
                8899999999999999999999999999775...5589***** PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.9    0.0033       7.5       5      24 ..       2      21 ..       1      36 [. 0.86
   2 ?    5.1   0.1     0.014        31       7      21 ..      40      54 ..      36      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0033
      DUF983  5 LkvadaCeaCgldlsharad 24
                L+++++Ce+C+ dl +a  d
  EHT99789.1  2 LELRPNCERCDIDLPAASRD 21
                899**********9887665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
      DUF983  7 vadaCeaCgldlsha 21
                ++ +C++Cg +l + 
  EHT99789.1 40 LQGNCPNCGGELVRR 54
                6789*****998665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.27     6e+02      29      32 ..       8      11 ..       3      21 .. 0.70
   2 ?   10.1   6.6    0.0003      0.68       6      38 ..      27      54 ..      24      56 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
  Zn-ribbon_8 29 CPeC 32
                 C +C
   EHT99789.1  8 CERC 11
                 5555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
  Zn-ribbon_8  6 YrCeeCghefe.vlqsisdaplta.CPeCgs.evrr 38
                 ++C+ C +  e +lq          CP+Cg+  vrr
   EHT99789.1 27 FECTFCATCAEqHLQ--------GnCPNCGGeLVRR 54
                 899999988883333........33******55554 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   7.1      0.66   1.5e+03       3       9 ..       6      12 ..       1      39 [. 0.62
   2 ?    7.6   0.1    0.0016       3.7       4      11 ..      43      50 ..      40      52 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.66
  PhnA_Zn_Ribbon  3 pkCplCa 9 
                    p+C+ C 
      EHT99789.1  6 PNCERCD 12
                    7777775 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0016
  PhnA_Zn_Ribbon  4 kCplCaSe 11
                    +Cp+C+ e
      EHT99789.1 43 NCPNCGGE 50
                    56666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 591.69
//
Query:       EHT99790.1  [L=475]
Description: ribosomal RNA small subunit methyltransferase F [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-48  163.8   0.0      6e-48  163.2   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    8.2e-26   90.3   0.0    1.9e-25   89.2   0.0    1.7  1  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
    8.6e-11   41.7   0.0    1.6e-10   40.8   0.0    1.5  1  Methyltranf_PUA  RNA-binding PUA-like domain of methyltransfe
    0.00051   20.2   0.0    0.00085   19.5   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
     0.0023   17.7   0.0     0.0039   17.0   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0059   16.3   0.0     0.0094   15.6   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
  ------ inclusion threshold ------
      0.049   14.4   0.0       0.47   11.2   0.0    2.3  1  Methyltransf_25  Methyltransferase domain
      0.083   12.0   0.0       0.12   11.5   0.0    1.3  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
       0.16   11.7   0.0       0.48   10.1   0.0    1.8  1  GntR             Bacterial regulatory proteins, gntR family


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0     3e-51     6e-48       8     200 .]     116     308 ..     109     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 3e-51
                      TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGGTTT-TCH CS
  Methyltr_RsmB-F   8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgvirrdpdv 101
                      + ++++D++aaPG+KTt ia+ m+n+g v+A++ +++R+k +++n++r gvtnt +++ Dar +   l + +fD iLlDaPCsg gvir+d d+
       EHT99790.1 116 DAQHFMDMAAAPGSKTTQIAARMHNQGIVLANEFSSSRVKVLHANITRCGVTNTALTHFDARVFGPALPE-QFDAILLDAPCSGEGVIRKDADA 208
                      67899***********************************************************998885.9********************** PP

                      HHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-T.TEEEESSBSTTSTTSSECEECTSEEE-TTTTSS-SE CS
  Methyltr_RsmB-F 102 klrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre.dvelvetelsepkglklgeeagtlrllPhtenkdgf 194
                        + + +    +a+ q++l+++a++ lk+gG+lvYsTC++++ En++v++ +L + +  ve+ ++ +  p   +  + +g l+++P+  + +gf
       EHT99790.1 209 LKNWSLASTHDIAQTQRDLIDSAFHALKPGGTLVYSTCTLNPIENQQVVAWLLARYPaAVEVAPLTTLFPGAEQAATPEGYLHVFPQLFDSEGF 302
                      999999***********************************************9976256777766555555555555568************* PP

                      EEEEEE CS
  Methyltr_RsmB-F 195 fiaklk 200
                      f+a+l+
       EHT99790.1 303 FVARLR 308
                      ***996 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   9.5e-29   1.9e-25       1      90 []       8     104 ..       8     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 9.5e-29
                      --HHHHHHHHHHHGG..GHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-TT-TTEEES---......TTSHHHHTTS-EE--T CS
  Methyltr_RsmF_N   1 LPeeFiekmkellge..eaeaflaaleeprkkglRvNtlKisveeleklse..efelepvpwceeGfyleeeerp...gkhplheaGlyYiQEp 87 
                      +P++F++ m++ l++  ++++f++  ++p +++lRvNtlKisv+++ + ++  +++l+pvpwce+Gf++++e++    g  ++h +Gl+YiQE+
       EHT99790.1   8 FPADFLDLMRQSLPDeaSLQQFIDISQQPLRRSLRVNTLKISVSAFLAQTAhyGWQLTPVPWCEDGFWISREDESlplGSVAEHLSGLFYIQEA 101
                      599***********966679*************************99887779******************9988899**************** PP

                      TTH CS
  Methyltr_RsmF_N  88 Sam 90 
                      S+m
       EHT99790.1 102 SSM 104
                      **9 PP

>> Methyltranf_PUA  RNA-binding PUA-like domain of methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   8.2e-14   1.6e-10       1      50 []     420     469 ..     420     469 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 8.2e-14
  Methyltranf_PUA   1 alrYlkGetielepdlkkGwvlVcydgyplGwgKlvggrlKNkyPkglRr 50 
                      a+++++G++i  e++    +++V+y+  plG +K+vg r+KN yP++l+r
       EHT99790.1 420 AEAWFRGRDIYPENPPTIDEMIVTYQAQPLGLAKRVGSRIKNSYPRELVR 469
                      6789**********9888*****************************985 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.3e-07   0.00085      21     138 ..     116     249 ..      95     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.3e-07
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHH........SSEEEEEE--S-SS-CH..HHHHHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse........rkvdlvvsDgapdvsgv..hdldeyl 109
                   ++++D +aaPG+ +  ++ r++++g v+a         ++v++++++it+  + ++ +++++         +++d ++ D   + +gv  +d d+++
  EHT99790.1 116 DAQHFMDMAAAPGSKTTQIAARMHNQGIVLANEF----SSSRVKVLHANITRCGVTNTALTHFDArvfgpalpEQFDAILLDAPCSGEGVirKDADALK 210
                 55789*****************987565655555....559****************99999988999*****9********97644554335666666 PP

                 H.........CCCCHHHHCCHCCCCECCCEEEECCCH.C CS
        FtsJ 110 q.........sqLllaalelalkllkpggtfvlkifr.g 138
                 +         +q  +  +  a++ lkpggt+v  +++ +
  EHT99790.1 211 NwslasthdiAQTQRDLIDSAFHALKPGGTLVYSTCTlN 249
                 666666666534444444445555********9888743 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     2e-06    0.0039       6     114 ..     119     253 ..     116     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2e-06
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl.............. 84 
                      +++D +++ G +t ++a ++  ++ v   ++s   +++  +n  + g++n  + + d+    + +l  e+fD il ++++              
       EHT99790.1 119 HFMDMAAAPGSKTTQIAARMHNQGIVLANEFSSSRVKVLHANITRCGVTNTALTHFDARVfGP-ALP-EQFDAILLDAPCsgegvirkdadalk 210
                      689*****************99*********************************99999445.344.89*******55555555555555556 PP

  Methyltransf_31  85 .......nalad.pdkileeiervlkpggilliedpr.....l 114
                             +++a  + + + +++ +lkpgg l+ +++       
       EHT99790.1 211 nwslastHDIAQtQRDLIDSAFHALKPGGTLVYSTCTlnpieN 253
                      6666666555441456777****************99444430 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-06    0.0094      41     141 ..     116     214 ..     108     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.7e-06
                    CC-EEEETT-TTSHHHHHHHHTT-SEEEEE..ES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHH CS
  Cons_hypoth95  41 egarvLDlfaGsGalglEAlSRgakkavlv..ekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevle 134
                    + ++++D+ a  G+     + R  ++ +++  e +++ vk+l++n+ ++++++ ta    da    + l    e+fd + lD P   e +i++  +
     EHT99790.1 116 DAQHFMDMAAAPGSKTTQIAARMHNQGIVLanEFSSSRVKVLHANITRCGVTN-TALTHFDARVFGPAL---PEQFDAILLDAPCSGEGVIRKDAD 207
                    567899999999999999899988886655337789999***********997.899999999999999...567*************99****** PP

                    HHHHTT- CS
  Cons_hypoth95 135 lleekkl 141
                    +l++ +l
     EHT99790.1 208 ALKNWSL 214
                    *996554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024      0.47       2      70 ..     121     192 ..     120     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                      EEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGB.SSSTTTEEEEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeegl.nvefvqgdaedl.pfedgsfDlvvs 70 
                      +d+++ +G  t ++a+r+ +++ v++ ++s++ ++  ++++ + g+ n  + + da+ + p   ++fD++++
       EHT99790.1 121 MDMAAAPGSKTTQIAARMhNQGIVLANEFSSSRVKVLHANITRCGVtNTALTHFDARVFgPALPEQFDAILL 192
                      69999***********99669*********************99999999******997467889****998 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.3e-05      0.12      52     127 ..     119     193 ..      37     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
                 EEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC--SS-EEEEEE- CS
         TRM  52 kvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnvllaekkkrfdviDlD 127
                 + +d  +a G ++   a  ++++  vlaN++s+  v++++ N++   v ++  ++  dA+v+  +  ++fd+i lD
  EHT99790.1 119 HFMDMAAAPGSKTTQIAARMHNQGIVLANEFSSSRVKVLHANITRCGVTNTALTHF-DARVFGPALPEQFDAILLD 193
                 6788889999999999**********************************888888.****************999 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00024      0.48      22      46 ..      18      42 ..      16      43 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
                SB---HHHHHHHHTS-HHHHHHHHH CS
        GntR 22 dkLPsereLaaefgVsrttvReALr 46
                + LP e +L++ +++s +++R++Lr
  EHT99790.1 18 QSLPDEASLQQFIDISQQPLRRSLR 42
                68*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3726.16
//
Query:       EHT99791.1  [L=879]
Description: mce family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-68  226.3  10.4    5.1e-16   58.7   0.1    7.3  7  MlaD      MlaD protein


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   2.9e-20   5.1e-16       2      81 .]      46     137 ..      45     137 .. 0.97
   2 !   23.5   0.0   2.8e-09     5e-05       5      62 ..     163     220 ..     160     251 .. 0.86
   3 !   27.2   0.0   1.9e-10   3.5e-06       3      71 ..     281     349 ..     279     364 .. 0.89
   4 !   22.6   0.0   5.2e-09   9.4e-05       4      67 ..     394     455 ..     391     461 .. 0.92
   5 !   15.9   0.0   6.6e-07     0.012       7      71 ..     519     589 ..     513     597 .. 0.84
   6 !   42.0   0.1   4.7e-15   8.5e-11       3      81 .]     633     722 ..     631     722 .. 0.91
   7 !   36.3   0.0   2.9e-13   5.3e-09       3      63 ..     746     806 ..     744     821 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 2.9e-20
        MlaD   2 gytvtaqfdnangLkvg.apVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped..........sraqvstggll.gekyialdpg 81 
                 g t+t+ f+ a g+ +g +pVry+Gv+vG+V+ i+l++d r++++++++++++ + ++e+          s a+vs+ + l g++yi + pg
  EHT99791.1  46 GTTITINFQTADGIVPGrTPVRYQGVEVGTVQGINLSDDYRKIQIKASIKSDMRDALRENtqfwlvtpkaSLAGVSGLDALvGGNYIGMMPG 137
                 789************************************************************************************99997 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.8e-09
        MlaD   5 vtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsr 62 
                 +++++++ ++L+ g+ V yr ++vGrV + +++ ++++v+++v +++++ ++++++sr
  EHT99791.1 163 IHLHAPDLGSLNTGSLVYYRKIPVGRVYDYSINGQNNGVSIDVLIERRFVNLVKTSSR 220
                 688999****************************************999999988854 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 1.9e-10
        MlaD   3 ytvtaqfdnangLkvg.apVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvstggll 71 
                 + + + ++n  +L+++ +p +y+G++vG+ t+++l +d+ +vt ++++d++   +++e++r+++++ +l 
  EHT99791.1 281 VLISLDLPNGDNLSANrTPLMYQGLEVGTLTKLNL-QDGGKVTGEMTVDPSVVGLMREGTRIEMHSPKLS 349
                 56788899999*99999******************.777779**********************999984 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 5.2e-09
        MlaD   4 tvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvst 67 
                 tv++ ++++ g+ +g+p +  G+++G+V s +l  d+++v + v +++++ +++ +ds+  v++
  EHT99791.1 394 TVKLSAPESYGIDAGQPLMLYGMKIGQVISRDL--DENGVNFVVAINPDHRQLVHSDSKFIVNS 455
                 899******************************..88888999999999********9988765 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 6.6e-07
        MlaD   7 aqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped........sraqvstggll 71 
                 +++++    ++g+ V yr  +vG++t++   p ++ + + v +++++ +++++         +r+q++++gl+
  EHT99791.1 519 LTAKSLPDVQAGSVVLYRKFQVGEITKV--TPRADAFDIAVHIKPEYRKLLTNEsvfwaeggARVQLNGSGLT 589
                 55566666899*****************..56999999******99*****9998999999999999999886 PP

  == domain 6  score: 42.0 bits;  conditional E-value: 4.7e-15
        MlaD   3 ytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsi.ped..........sraqvstggllgekyialdpg 81 
                  ++t+++ +a++L++g p+ry G++vG+++s++l++d+++v +++ l++++ + + + d          s a+v+  +++ + y+++dpg
  EHT99791.1 633 SQITLHTYDASKLSAGMPIRYLGINVGQIESLSLSDDNNQVVAKAVLYPEYVQNFaRVDsrfsvvspeiSAAGVNHLETILQPYVNVDPG 722
                 68999*******************************************999888845558888888888999999999999999999997 PP

  == domain 7  score: 36.3 bits;  conditional E-value: 2.9e-13
        MlaD   3 ytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsra 63 
                   +++ +++a++L+ g+pV +rGv+vG+Vt  +l + ++rv++ +++ kk++ +++++s  
  EHT99791.1 746 LNIYVDATEAGSLSLGTPVLFRGVEVGTVTGTSLGNMADRVQIALRISKKYQHLVRNNSVF 806
                 5789999**************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 6137.07
//
Query:       EHT99792.1  [L=414]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-82  273.2  34.2    3.1e-44  150.5  12.6    2.0  2  PqiA            Paraquat-inducible protein A
     0.0016   18.4   0.5       0.52   10.4   0.1    2.5  2  HypA            Hydrogenase/urease nickel incorporation, meta
     0.0021   17.9   6.4      0.015   15.2   2.1    2.7  2  zinc_ribbon_4   zinc-ribbon domain
     0.0033   16.8   3.5        3.3    7.2   0.2    3.5  3  zf-ribbon_3     zinc-ribbon domain
     0.0033   17.7   4.5       0.32   11.3   0.0    4.1  3  zf-LITAF-like   LITAF-like zinc ribbon domain
      0.004   16.7   4.7          1    9.0   0.1    3.5  3  zf_UBZ          Ubiquitin-Binding Zinc Finger
     0.0068   15.5   6.5        0.2   10.7   0.1    3.0  3  Tmemb_55A       Transmembrane protein 55A
      0.007   16.4   7.8       0.74    9.9   1.0    2.6  2  DZR             Double zinc ribbon
  ------ inclusion threshold ------
      0.039   14.0   2.0        4.7    7.3   0.1    2.3  2  Zn_Tnp_IS91     Transposase zinc-binding domain
      0.054   13.3   0.9      0.054   13.3   0.9    3.0  3  zf-RING_4       RING/Ubox like zinc-binding domain
      0.086   12.8   6.6          2    8.4   0.8    2.4  2  zinc-ribbons_6  zinc-ribbons
       0.14   11.7   4.9      0.063   12.8   1.4    2.1  2  XAF1_C          XIAP-associated factor 1 C-terminal domain
       0.14   12.4   4.8       0.13   12.5   0.5    2.2  2  IBR             IBR domain, a half RING-finger domain
       0.41   10.4   7.9       0.28   11.0   2.5    2.5  2  zinc_ribbon_5   zinc-ribbon domain
       0.99    9.0   3.8        6.4    6.4   0.3    2.3  2  TackOD1         Thaumarchaeal output domain 1
          1    8.7   5.9         17    4.8   0.2    3.4  3  zf-TFIIB        Transcription factor zinc-finger
        1.3    9.8   4.2         12    6.8   0.2    2.5  2  zinc_ribbon_15  zinc-ribbon family
        1.8    8.8  10.0        1.6    8.9   0.3    3.1  3  FYVE            FYVE zinc finger
        2.5    8.3  11.1       0.42   10.8   1.3    2.8  3  Zn-ribbon_8     Zinc ribbon domain
        3.6    7.7   7.2         30    4.7   0.5    3.3  3  DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domai
        8.7    6.3  10.9        6.1    6.8   1.3    3.2  3  zf-HIT          HIT zinc finger


Domain annotation for each model (and alignments):
>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9  13.6   1.6e-40   1.4e-37       2     155 ..      54     204 ..      53     205 .. 0.98
   2 !  150.5  12.6   3.6e-47   3.1e-44       1     154 [.     250     404 ..     250     406 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.6e-40
        PqiA   2 qrtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgsrrllrlleflgrW 100
                 +r+la+a ++l+l+++A+++p++ ++llg++ +a+ll+g++++  +g++l+A +v++++i +P++ ++++ +l+l  +lg   +++r++l +le+l++W
  EHT99792.1  54 TRLLAMAATMLVLMPFAFSMPLIYIRLLGMRINASLLEGIVQMTLQGNVLTASMVAFCTIGAPVTLVAGIGYLALGQRLG---MNLRPVLLMLEKLKEW 149
                 799**************************************************************************887...679************* PP

        PqiA 101 sMldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdrl 155
                 +Mld+f++gi+va +k++++a++e+g+gl+a+++l++l +++  +++ ++lW+++
  EHT99792.1 150 VMLDIFLIGIAVASIKVQEYADLEMGYGLVAYIALTVLSVMTLIHLNIEQLWEHF 204
                 ****************************************************987 PP

  == domain 2  score: 150.5 bits;  conditional E-value: 3.6e-47
        PqiA   1 lqrtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgs..rrllrllefl 97 
                 lq+++a ++a+++llipAnllpi  + l+gs++e+t++sg+l+l++ g+++vA++vf+asilvP++k+l++l llls++++ ++  +   rllr++ ++
  EHT99792.1 250 LQKSWAALIASIVLLIPANLLPISVVYLNGSRREDTIFSGILSLAS-GNIPVAAIVFIASILVPFTKVLVMLALLLSIHFRCEQGLKtrIRLLRFVTWV 347
                 699****************************************986.68*****************************998554433779********* PP

        PqiA  98 grWsMldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdr 154
                 grWsMld fv+++ ++lv+  +l+ +++gp++++f++ v+lt++a++ +d+rllWd+
  EHT99792.1 348 GRWSMLDLFVISLTMSLVNRDQLLAFTMGPAAFYFGAAVILTIMAVEWLDSRLLWDA 404
                 *******************************************************97 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0006      0.52      72     104 ..      17      50 ..       8      57 .. 0.73
   2 ?    5.8   0.0     0.016        14      67      94 ..     214     240 ..     165     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0006
                 EETTTS-EEECHH.H...HHS-TTTSSS-EEEEESSS CS
        HypA  72 rCreCgkefelee.k...alrCpkCgsadveivsGee 104
                 rC +C++ f+l + k   +++Cp+C++   +ivsG +
  EHT99792.1  17 RCPQCDTLFSLPDvKshqSAHCPRCNA---QIVSGYD 50 
                 8*********76643334668999987...5677765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.016
                 E--EEEETTTS-EEECHHHHHS-TTTSS CS
        HypA  67 vpvkvrCreCgkefeleekalrCpkCgs 94 
                  +    C +C+++   ++ + rCp+C++
  EHT99792.1 214 REDLQVCLNCHYTDVPDA-RGRCPRCHT 240
                 555567999*97766554.479****86 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.1   1.8e-05     0.015       4      35 ..      17      45 ..      16      46 .. 0.89
   2 ?    3.9   0.1      0.06        51       4      10 ..     234     240 ..     232     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
  zinc_ribbon_4  4 tCpsCkakyeiddeklpakgvkvrCskCghvF 35
                   +Cp+C + ++++d    ++++++ C++C++ +
     EHT99792.1 17 RCPQCDTLFSLPDV---KSHQSAHCPRCNAQI 45
                   7************4...78899******9875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.06
  zinc_ribbon_4   4 tCpsCka 10 
                    +Cp+C++
     EHT99792.1 234 RCPRCHT 240
                    6888887 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.011       9.1       3      10 ..      16      23 ..      14      28 .. 0.83
   2 !    7.2   0.2    0.0039       3.3       3      13 ..      36      47 ..      34      50 .. 0.81
   3 ?    2.7   0.1       0.1        90       4      14 ..     234     244 ..     234     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
  zf-ribbon_3  3 vrCPnCGa 10
                 +rCP+C++
   EHT99792.1 16 QRCPQCDT 23
                 79****87 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0039
  zf-ribbon_3  3 vrCPnCGa.pls 13
                  +CP+C+a ++s
   EHT99792.1 36 AHCPRCNAqIVS 47
                 59******6665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.1
  zf-ribbon_3   4 rCPnCGaplss 14 
                  rCP+C +pl+ 
   EHT99792.1 234 RCPRCHTPLDF 244
                  7****888776 PP

>> zf-LITAF-like  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2       1.1   9.5e+02      57      65 ..      16      24 ..      12      26 .. 0.75
   2 !   11.3   0.0   0.00037      0.32       4      47 ..      34      75 ..      31      82 .. 0.78
   3 ?    4.3   0.1     0.056        48      43      66 ..     220     242 ..     216     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
  zf-LITAF-like 57 hyCpnCgal 65
                   ++Cp+C +l
     EHT99792.1 16 QRCPQCDTL 24
                   579999875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00037
  zf-LITAF-like  4 tqvdCpaCqqrvvTsveyksgkltwllalllclfgcllccliPf 47
                   ++ +Cp+C++++v+    + + l  ++a +l+l+ +   + +P+
     EHT99792.1 34 QSAHCPRCNAQIVSGYDWSMTRLLAMAATMLVLMPF--AFSMPL 75
                   7789**********9999999999988888888775..333454 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.056
  zf-LITAF-like  43 cliPfcvdslkdvehyCpnCgall 66 
                    c + + + +  d++ +Cp+C++ l
     EHT99792.1 220 C-LNCHYTDVPDARGRCPRCHTPL 242
                    3.4577888889999999998766 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0012         1       3      21 ..      16      34 ..      14      34 .. 0.92
   2 ?    5.1   0.1     0.019        17       5      12 ..      38      45 ..      35      50 .. 0.88
   3 ?    2.6   0.2      0.12   1.1e+02       5      12 ..     235     242 ..     232     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
      zf_UBZ  3 ylCerCgkeipeselqEHe 21
                + C++C++ ++ +++ +H+
  EHT99792.1 16 QRCPQCDTLFSLPDVKSHQ 34
                57****************7 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.019
      zf_UBZ  5 CerCgkei 12
                C+rC+++i
  EHT99792.1 38 CPRCNAQI 45
                ******99 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.12
      zf_UBZ   5 CerCgkei 12 
                 C+rC++++
  EHT99792.1 235 CPRCHTPL 242
                 ****9875 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00024       0.2     143     204 ..      10      72 ..       3      98 .. 0.84
   2 ?   -0.4   0.5       0.6   5.1e+02     199     235 ..     155     193 ..     144     198 .. 0.58
   3 !    6.6   0.1    0.0041       3.5     151     206 ..     220     271 ..     202     294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
   Tmemb_55A 143 qpvgvrviCghCkntflftels.rtlarCPhCrkvssvGrryarkrsllllllglillviaig 204
                  p++    C  C   f   +++ +  a+CP+C      G +++ +r l+++  +l+l+  a +
  EHT99792.1  10 LPHARYQRCPQCDTLFSLPDVKsHQSAHCPRCNAQIVSGYDWSMTRLLAMAATMLVLMPFAFS 72 
                 56666678**********99998999******9988889999999999998888888766655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.6
   Tmemb_55A 199 lviaigltlgtlkqak..kykgiyvsyvllillalvlla 235
                 ++i+i+++   +++    +++  +v+y++l +l++++l+
  EHT99792.1 155 FLIGIAVASIKVQEYAdlEMGYGLVAYIALTVLSVMTLI 193
                 344444443333333301333446899999999999886 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0041
   Tmemb_55A 151 CghCkntflftelsrtlarCPhCrkvssvGrryarkrsllllllglillviaiglt 206
                 C  C     +t++  ++ rCP+C+      rr++ ++s + l+ +++ll+ a  l 
  EHT99792.1 220 CLNC----HYTDVPDARGRCPRCHTPLDFRRRHSLQKSWAALIASIVLLIPANLLP 271
                 4444....36788899*************************999999998876654 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   1.0   0.00087      0.74      11      38 ..      14      45 ..       8      50 .. 0.65
   2 !    9.5   0.9    0.0011      0.97      14      39 ..     219     243 ..     206     249 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00087
         DZR 11 darfCseCgtk..lkavaa..edrCpsCgekv 38
                + + C++C t   l+ v++  + +Cp+C++++
  EHT99792.1 14 RYQRCPQCDTLfsLPDVKShqSAHCPRCNAQI 45
                55678888887443333336788888888773 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
         DZR  14 fCseCgtk.lkavaaedrCpsCgekvd 39 
                 +C +C  + +  + a  rCp+C++++d
  EHT99792.1 219 VCLNCHYTdV--PDARGRCPRCHTPLD 243
                 5555543322..234555555555544 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0055       4.7      38      66 ..      13      44 ..       6      66 .. 0.73
   2 ?    6.0   0.2     0.015        12       3      47 ..     198     240 ..     194     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0055
  Zn_Tnp_IS91 38 arye.CeeCghekivy..fsCksrhCpsCqkk 66
                 ary+ C++C+    ++   s +s hCp+C+++
   EHT99792.1 13 ARYQrCPQCDTLFSLPdvKSHQSAHCPRCNAQ 44
                 5554499999887776336888999****986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.015
  Zn_Tnp_IS91   3 kdhleeflekkkklrpsqrkavekilrCrtaalGfaryeCeeCgh 47 
                  ++ +e+f+ +  + + + r+ ++  l+C+  +   ar +C+ C+ 
   EHT99792.1 198 EQLWEHFYPQ--QPQVTRREDLQVCLNCHYTDVPDARGRCPRCHT 240
                  6677777777..678889999**********************85 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5       0.3   2.6e+02      37      45 ..      15      23 ..       4      26 .. 0.74
   2 ?   -0.2   5.0       1.1   9.1e+02      29      44 ..      27      42 ..      13      45 .. 0.62
   3 ?   13.3   0.9   6.3e-05     0.054      23      46 ..     218     241 ..     216     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.3
   zf-RING_4 37 egrCPaCre 45
                 +rCP+C +
  EHT99792.1 15 YQRCPQCDT 23
                689****65 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
   zf-RING_4 29 yhrileeeegrCPaCr 44
                + ++++++++ CP C 
  EHT99792.1 27 LPDVKSHQSAHCPRCN 42
                4567778899999996 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 6.3e-05
   zf-RING_4  23 qiClfCyhrileeeegrCPaCree 46 
                 q+Cl C+   + ++ grCP C ++
  EHT99792.1 218 QVCLNCHYTDVPDARGRCPRCHTP 241
                 9*****9888889********986 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8    0.0024         2      17      39 ..      16      45 ..       7      48 .. 0.70
   2 ?    7.0   0.6    0.0066       5.6      12      41 ..     213     244 ..     206     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0024
                    EE-TTT--.......EEEEEEE-SSS-S-- CS
  zinc-ribbons_6 17 yhCeaCqe.......dlkkealCpeCeqel 39
                     +C +C++       + ++ a+Cp+C+ ++
      EHT99792.1 16 QRCPQCDTlfslpdvKSHQSAHCPRCNAQI 45
                    467777777777766666777788877664 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0066
                     E-SSEEE-TTT--..EEEEEEE-SSS-S---E CS
  zinc-ribbons_6  12 krgeqyhCeaCqe..dlkkealCpeCeqelev 41 
                     +r++   C +C+     +    Cp+C+ +l++
      EHT99792.1 213 RREDLQVCLNCHYtdVPDARGRCPRCHTPLDF 244
                     4555667999987545578899******9986 PP

>> XAF1_C  XIAP-associated factor 1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.4   7.3e-05     0.063      18      37 ..      16      35 ..       5      43 .. 0.88
   2 ?   -1.1   0.1       1.7   1.4e+03      19      31 ..     234     244 ..     230     256 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.3e-05
      XAF1_C 18 rrCsqCgiLLPLptLnkHqe 37
                +rC+qC++L  Lp  + Hq 
  EHT99792.1 16 QRCPQCDTLFSLPDVKSHQS 35
                69****************95 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
      XAF1_C  19 rCsqCgiLLPLpt 31 
                 rC++C +  PL  
  EHT99792.1 234 RCPRCHT--PLDF 244
                 9****87..5555 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   0.00015      0.13      16      47 ..      13      44 ..       2      46 .. 0.79
   2 ?    1.1   0.3      0.54   4.6e+02      12      45 ..     211     239 ..     203     245 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
         IBR 16 pnlkwCprpdCeaiiekseg..cksvtCskCgfe 47
                  ++ Cp  +C+++++  +    +s++C++C+ +
  EHT99792.1 13 ARYQRCP--QCDTLFSLPDVksHQSAHCPRCNAQ 44
                55899**..******999995444489****976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.54
         IBR  12 lesdpnlkwCprpdCeaiieksegcksvtCskCg 45 
                 ++  ++l+ C   +C +   +++  ++  C++C+
  EHT99792.1 211 VTRREDLQVCL--NCHYTDVPDAR-GR--CPRCH 239
                 55566677777..77744333333.44..77776 PP

>> zinc_ribbon_5  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.5   0.00033      0.28       4      31 ..      17      41 ..      16      44 .. 0.78
   2 ?    1.5   0.3      0.31   2.6e+02       4      10 ..     234     240 ..     232     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
  zinc_ribbon_5  4 rCpdCdtkFklvdsklKksgkkVrCakC 31
                   rCp+Cdt F l d k   s +   C +C
     EHT99792.1 17 RCPQCDTLFSLPDVK---SHQSAHCPRC 41
                   8**********9987...5555566666 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.31
  zinc_ribbon_5   4 rCpdCdt 10 
                    rCp C t
     EHT99792.1 234 RCPRCHT 240
                    8****98 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3    0.0074       6.4     105     133 ..      17      45 ..       7      56 .. 0.55
   2 ?    3.3   0.3     0.066        56      73     170 ..     217     240 ..     205     252 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0074
     TackOD1 105 hhftCgnvgpeeeflkegkleCpkCktkL 133
                  + +C ++ +  + + +++  Cp+C+ ++
  EHT99792.1  17 RCPQCDTLFSLPDVKSHQSAHCPRCNAQI 45 
                 34444444444444444444444444444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.066
     TackOD1  73 irlCpsCksghlnvrevCpkCkSidieeqelihhftCgnvgpeeeflkegkleCpkCktkLrhiGvDYdrplevykCnsCkslfsepevkarClsCek 170
                 +++C +C+   +                                                                          p+++ rC +C++
  EHT99792.1 217 LQVCLNCHYTDV--------------------------------------------------------------------------PDARGRCPRCHT 240
                 344555554444..........................................................................444445555544 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.35     3e+02      21      25 ..      17      21 ..      14      30 .. 0.82
   2 ?    3.8   0.1     0.043        36       1       8 [.      37      44 ..      37      49 .. 0.82
   3 ?    4.8   0.2      0.02        17       2      10 ..     235     243 ..     234     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.35
    zf-TFIIB 21 yCpqC 25
                +CpqC
  EHT99792.1 17 RCPQC 21
                67777 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.043
    zf-TFIIB  1 kCPkCqde 8 
                +CP+C+++
  EHT99792.1 37 HCPRCNAQ 44
                7****986 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.02
    zf-TFIIB   2 CPkCqdele 10 
                 CP+C+++l 
  EHT99792.1 235 CPRCHTPLD 243
                 *****9996 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2     0.014        12      36      79 ..      14      49 ..       4      52 .. 0.72
   2 ?    3.7   0.5      0.12     1e+02      61      85 ..     213     238 ..     196     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.014
  zinc_ribbon_15 36 pylacskCkslleaskelgkeiekkessekkeCknCgkeveeef 79
                     y  c +C +l++  +         +s+++ +C++C++++ + +
      EHT99792.1 14 RYQRCPQCDTLFSLPD--------VKSHQSAHCPRCNAQIVSGY 49
                    5777888888888887........34455788888888877665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.12
  zinc_ribbon_15  61 essekkeCknCgke.veeefkyCpkC 85 
                     ++++ ++C nC+ + v +    Cp+C
      EHT99792.1 213 RREDLQVCLNCHYTdVPDARGRCPRC 238
                     3444789****96526667889**** PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3    0.0019       1.6       5      32 ..      11      42 ..       7      60 .. 0.81
   2 ?    2.8   0.1      0.15   1.3e+02      42      64 ..     203     225 ..     189     230 .. 0.82
   3 ?    1.8   0.8      0.31   2.6e+02      10      26 ..     233     248 ..     227     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
                ...--SB-TTT--B--S....SS--EE-TTT- CS
        FYVE  5 ddsevkkCeiCakkFsl....lrrrhhCrlCG 32
                + ++ ++C++C++ Fsl    +++  hC  C 
  EHT99792.1 11 PHARYQRCPQCDTLFSLpdvkSHQSAHCPRCN 42
                5678899*********8555457788999996 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
                 EEE.EEGGGTEEEEEEE-HHHHH CS
        FYVE  42 klvallekeaeeksvrvCkeCla 64 
                 ++++++++ + +++++vC +C++
  EHT99792.1 203 HFYPQQPQVTRREDLQVCLNCHY 225
                 555566788889999******97 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.31
                 SB-TTT--B--SSS--E CS
        FYVE  10 kkCeiCakkFsllrrrh 26 
                  +C+ C+++  + rrrh
  EHT99792.1 233 GRCPRCHTPLDF-RRRH 248
                 57********98.8887 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   0.00049      0.42       7      34 ..      17      43 ..      14      47 .. 0.77
   2 ?   -1.6   0.1       3.7   3.1e+03      25      33 ..     216     224 ..     210     229 .. 0.64
   3 ?    1.2   2.8      0.49   4.2e+02      28      35 ..     234     241 ..     219     247 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00049
  Zn-ribbon_8  7 rCeeCghefe.vlqsisdaplta.CPeCgs 34
                 rC +C++ f  + ++++   + a CP+C++
   EHT99792.1 17 RCPQCDTLFSlPDVKSH---QSAhCPRCNA 43
                 7*********7666666...4555****97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.7
  Zn-ribbon_8  25 pltaCPeCg 33 
                  +l++C +C+
   EHT99792.1 216 DLQVCLNCH 224
                  455688886 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.49
  Zn-ribbon_8  28 aCPeCgse 35 
                   CP+C+ +
   EHT99792.1 234 RCPRCHTP 241
                  4****984 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.63   5.4e+02       1       7 [.      17      23 ..      17      24 .. 0.84
   2 ?    4.7   0.5     0.035        30       1      10 [.      37      46 ..      37      48 .. 0.90
   3 ?    4.4   0.1     0.047        40       1       9 [.     234     242 ..     234     246 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.63
  DNA_ligase_ZBD  1 hCPvCGs 7 
                    +CP C++
      EHT99792.1 17 RCPQCDT 23
                    5****86 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.035
  DNA_ligase_ZBD  1 hCPvCGsavv 10
                    hCP C++ +v
      EHT99792.1 37 HCPRCNAQIV 46
                    9*****9887 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.047
  DNA_ligase_ZBD   1 hCPvCGsav 9  
                     +CP C++++
      EHT99792.1 234 RCPRCHTPL 242
                     5******97 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.28   2.4e+02      15      21 ..      17      23 ..      12      25 .. 0.82
   2 ?    2.8   0.2      0.13   1.1e+02      16      21 ..      38      43 ..      37      46 .. 0.87
   3 ?    6.8   1.3    0.0072       6.1       4      22 ..     219     241 ..     217     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.28
                E-TTT-- CS
      zf-HIT 15 kCpkCnt 21
                +Cp+C t
  EHT99792.1 17 RCPQCDT 23
                8****87 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
                -TTT-- CS
      zf-HIT 16 CpkCnt 21
                Cp+Cn+
  EHT99792.1 38 CPRCNA 43
                *****8 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0072
                 B-TTT-S....B-SEE-TTT--E CS
      zf-HIT   4 lCgvCgf....pakYkCpkCntr 22 
                 +C  C++     a+ +Cp+C+t+
  EHT99792.1 219 VCLNCHYtdvpDARGRCPRCHTP 241
                 688888888888999******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2679.14
//
Query:       EHT99793.1  [L=166]
Description: free methionine-(R)-sulfoxide reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-11   42.3   0.0    1.2e-10   41.8   0.0    1.2  1  GAF_2     GAF domain
      1e-06   29.4   0.0    1.2e-06   29.2   0.0    1.2  1  GAF       GAF domain
     0.0073   16.7   0.0       0.01   16.2   0.0    1.3  1  GAF_3     GAF domain


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     2e-14   1.2e-10      20     130 ..      44     145 ..      31     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 2e-14
                 ..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-TTS---EEEEES......- CS
       GAF_2  20 aalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlisegrvvGvlnlyankppaf 118
                 + +g++ll ++ +   l+   ++++  + ++  p+g+g++g+al++++   ++d+ +     g+ a +a+ ++++++Pl  +g+vvGvl + + + ++f
  EHT99793.1  44 W-AGFYLLTEA-DT--LVLGPFQGKIACVRI--PVGKGVCGTALAQNQVQRVDDVHA---FPGHIACDAASNAEIVIPLKVNGHVVGVLDIDSVEYNRF 133
                 3.477777554.55..788899999999999..9**************999999666...66777999***********999***************** PP

                 -HHHHHHHHHHH CS
       GAF_2 119 deedlelLeela 130
                 d +d   L +l 
  EHT99793.1 134 DSDDEKGLVALT 145
                 *99987766665 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     2e-10   1.2e-06      42     122 ..      56     141 ..      12     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2e-10
                 C...........EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEEEEEEE.SSSCSHHHHHHHH CS
         GAF  42 w...........lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvndgelwGllvlhn.psppftreelell 122
                             +++++g+g+cg++la++q+ +++d+ + p + +           +++ +v+Pl+++g+++G+l++++ + ++f+++++  l
  EHT99793.1  56 LvlgpfqgkiacVRIPVGKGVCGTALAQNQVQRVDDVHAFPGHIA-------CDAASNAEIVIPLKVNGHVVGVLDIDSvEYNRFDSDDEKGL 141
                 23333444455678899******************8877777777.......57899999*******************74457988877655 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.7e-06      0.01      56     121 ..      76     146 ..      39     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-06
       GAF_3  56 larralssgevvsepsfaeedg.....lpdraalavPLvagrqviGvlalastkprafdaedlelleslAr 121
                 ++ +al++ +v+ + ++++ +g       ++a +++PL++  +v+Gvl + s ++  fd++d+  l +l++
  EHT99793.1  76 VCGTALAQNQVQRVDDVHAFPGhiacdAASNAEIVIPLKVNGHVVGVLDIDSVEYNRFDSDDEKGLVALTD 146
                 556666666776666666655543333456888*******66*************9*****9998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1192.78
//
Query:       EHT99794.1  [L=234]
Description: putative structural transport element [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-42  141.4   0.1      2e-41  140.3   0.0    1.5  2  ProQ           ProQ/FINO family
      1e-25   88.9   0.3    1.6e-25   88.3   0.3    1.3  1  ProQ_C         ProQ C-terminal domain
  ------ inclusion threshold ------
      0.046   13.7   0.1       0.25   11.3   0.1    2.1  2  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
      0.069   13.5   0.1        0.4   11.0   0.1    2.1  2  S1             S1 RNA binding domain
        2.5    6.3   4.8          3    6.1   4.8    1.1  1  Menin          Menin


Domain annotation for each model (and alignments):
>> ProQ  ProQ/FINO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   5.5e-45     2e-41       2     109 ..       8     115 ..       7     116 .. 0.98
   2 ?   -3.4   0.0       2.6   9.2e+03      69      89 ..     211     231 ..     208     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 5.5e-45
        ProQ   2 ksvkeliaelaekFPkaFskegeakPLkiGIfedllerladkeklskkklrkaLktytsslrYlkavkegaaRvDLdGnpvgevteehaehAkaqlker 100
                 +s+ke+i++lae+FP++Fs+egea+PLkiGIf+dl+er + + +lsk++lr+aL+ ytss+rYl+++k+ga+RvDLdGnp+g ++e+h+ehA++ql+++
  EHT99794.1   8 NSSKEVISFLAERFPHCFSAEGEARPLKIGIFQDLVERVQGEMNLSKTQLRSALRLYTSSWRYLYGIKAGATRVDLDGNPCGVLDEQHVEHARKQLEDA 106
                 6789*********************************************************************************************** PP

        ProQ 101 kqkraakrk 109
                 k++++a+r 
  EHT99794.1 107 KARVQAQRD 115
                 *****9986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
        ProQ  69 kegaaRvDLdGnpvgevteeh 89 
                  ++ +Rv L+   +  v++eh
  EHT99794.1 211 SKDGVRVQLASGMAMIVRAEH 231
                 567788888888888888877 PP

>> ProQ_C  ProQ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.3   4.4e-29   1.6e-25       1      51 []     184     234 .]     184     234 .] 0.97

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 4.4e-29
                 -SSSS-TT--B---SSSS---EEEEEE-SSSEEEEETTS-B--B-TTT--- CS
      ProQ_C   1 dlaeLkvGqqVkVklGkspmpAtileiaKddVrVqLasGlvvkVkaehLfl 51 
                 d+++L+ Gq++kVk+Gks+m+At+le++Kd+VrVqLasG++++V+aehL++
  EHT99794.1 184 DTSTLQPGQSIKVKAGKSAMDATVLEVSKDGVRVQLASGMAMIVRAEHLQF 234
                 679**********************************************85 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.45   1.6e+03      29      43 ..     183     197 ..     180     197 .. 0.81
   2 ?   11.3   0.1     7e-05      0.25       3      20 ..     203     220 ..     201     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
  RNase_II_C_S1  29 eggaglplGervrVr 43 
                    +++++l +G+ + V+
     EHT99794.1 183 TDTSTLQPGQSIKVK 197
                    566789******996 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7e-05
  RNase_II_C_S1   3 FdAvVvdvddrggtVqla 20 
                    +dA+V++v+++g++Vqla
     EHT99794.1 203 MDATVLEVSKDGVRVQLA 220
                    79***************8 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.4   1.4e+03      48      59 ..     186     197 ..     172     200 .. 0.83
   2 ?   11.0   0.1   0.00011       0.4       8      37 ..     203     232 ..     195     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.4
                 HCEETTEEEEEE CS
          S1  48 evlkvGdevkvk 59 
                  +l++G+ +kvk
  EHT99794.1 186 STLQPGQSIKVK 197
                 6899******98 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
                 EEEEEEEEETTEEEEEETTTEEEEEEGGGS CS
          S1   8 veGeVtsvtkgGafVelgngvegfvpasel 37 
                 ++++V +v+k+G++V+l  g+   v a++l
  EHT99794.1 203 MDATVLEVSKDGVRVQLASGMAMIVRAEHL 232
                 799*****************9999998876 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.8   0.00084         3     453     540 ..      94     180 ..      74     224 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00084
       Menin 453 aaaaeaaed.edaaseealeGnrrrgprreskkeeksksseqlPttladltaacgekilnpdfllqggdqplaeqkqkkageeserrea 540
                 ++ + a+++ eda++    + +++r++rre+ + e+  s+++ P ++a   aa g+   +p    q +++p a+q++k a   ++++ +
  EHT99794.1  94 QHVEHARKQlEDAKARVQAQRDQQRAARREAGEGEEGASAPRRPRKPAPRKAAEGDAARKPR--PQSAERPTASQHRKPAPRPEQQQAK 180
                 44444444414444444455568899999**99999999*****************999996..699999*999998877655554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1345  (0.0750181); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1660.22
//
Query:       EHT99795.1  [L=681]
Description: carboxy-terminal protease for penicillin-binding protein 3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-58  196.6   4.7      5e-58  196.6   4.7    2.0  2  TSP_NTD        Tail specific protease N-terminal domain
    7.1e-52  175.3   0.1    1.2e-51  174.6   0.1    1.4  1  Peptidase_S41  Peptidase family S41
    1.9e-41  141.8   7.6    3.5e-41  140.9   7.6    1.5  1  DUF3340        C-terminal domain of tail specific protease (D
    2.4e-14   53.4   0.3      5e-14   52.4   0.3    1.6  1  PDZ            PDZ domain
    3.4e-06   26.8   0.6    1.2e-05   25.1   0.6    1.9  1  PDZ_6          PDZ domain
     0.0027   18.0   0.3     0.0078   16.5   0.3    1.8  1  PDZ_2          PDZ domain


Domain annotation for each model (and alignments):
>> TSP_NTD  Tail specific protease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   4.7   1.7e-61     5e-58       2     193 .]      48     231 ..      47     231 .. 0.98
   2 ?   -0.9   1.0      0.56   1.7e+03      95     159 ..     574     637 ..     559     658 .. 0.62

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 1.7e-61
     TSP_NTD   2 vekLereHykkkklddelskkvfdrYlkqLDpqklyflqsDidefekyreklddalkngdlsfaeeiynlyqkrieerkeyikellkkpfdfskdetle 100
                 +++++r Hy++ +ld ++s k+fdrYl++LD++++++l+sD+++f  ++++l d+l++g+l+ ++++ynl qkr  er++y+  +l++p++f+ ++t++
  EHT99795.1  48 TSRFTRSHYRQFDLDGAFSAKIFDRYLNMLDYSHNVLLASDVAQFASKKTQLGDELRSGKLDIFYDLYNLAQKRRFERYQYALTVLARPMNFTGNDTID 146
                 67899********************************************************************************************** PP

     TSP_NTD 101 ldrekapwakneaelkelwrkrlkneilaelklkskkdkeikkskeelekryeeqlkrlsqrlekkksedvfelflnalassfDPHTsYfspk 193
                 +dr+kapw+k+++el++lw  ++k++ l +lkl++k++kei++    l+kry+ +++rl q    ++sedvf+l +na+a+ +DPHT+Y+sp+
  EHT99795.1 147 IDRSKAPWPKDQNELNALWDAKVKYDEL-SLKLAGKDEKEIRD---VLTKRYNFAIRRLAQ----SNSEDVFQLAMNAFAHEIDPHTNYLSPR 231
                 ****************************.******99999999...***************....***************************7 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.56
     TSP_NTD  95 kdetleldrekapwakneaelkelwrkrlkneilaelklkskkdkeikkskeelekryeeqlkrl 159
                 +de+++ dre +   k+ a +++   kr + ++   +++k++ ++++++  e++++ry+ + k+ 
  EHT99795.1 574 HDERIAKDREFQYIMKDIARFNAMKDKRNIVSLNLAQREKENHEDDALR-LERINARYQAEGKKP 637
                 4566666666666666666666666666666655555555444444444.666777776665554 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.1   3.9e-55   1.2e-51       1     164 [.     355     527 ..     355     529 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 3.9e-55
                    EEEEEEES-BCCTHHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEEEEECTTSEEEEEEHTCSS-STT-BSSEEEEEE-T CS
  Peptidase_S41   1 kiGyiripsfsektkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddglivstrgrdgkkkkksktekaseevqykgplvvLvne 96 
                    k+G++ ip f    +++++  l++l+k+nv+++++DlR NgGG l+eav+l++lf+++g++v++r+++g+ ++ s+++       ykgplvvLv++
     EHT99795.1 355 KVGVLDIPGFYVGLTDDVKVQLQKLQKQNVDSIVIDLRTNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRIRQDSDNDGIV---YYKGPLVVLVDR 447
                    79********8899**********************************************************555555544...5*********** PP

                    TBBTHHHHHHHHHHHTTSEEEEES--SB-EEEEEEEE-TT............SSEEEEEEEEEEETTSBCTTTTS---SE CS
  Peptidase_S41  97 gsaSaseifagalkdngratlvGertfGkgtvqsvvelnd............gsalkltiakyltpdgrsiekkGvePdi 164
                     saSaseifa+a++d+gra++vGe+tfGkgtvq++++ln+             +++++ti+k+++ +g+s+++kGv+Pd 
     EHT99795.1 448 FSASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLNRiydqmlrpewpaLGSVQYTIQKFYRINGGSTQRKGVTPDL 527
                    **************************************8889999999999999*************************6 PP

>> DUF3340  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   7.6   1.2e-44   3.5e-41       2     154 ..     534     666 ..     533     667 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 1.2e-44
     DUF3340   2 dyeeiGEssldnALpWDkIspanykkygkiaallpkLkkksekRiakdpeFklleediawlkerkek.ktvsLnekkrkaereeqeakrlarenereka 99 
                 +++e+GE+ +dnALpWD+I++a+y k g+++al+p+L+k++++Riakd+eF+++ +dia++++ k+k + vsLn+++r++e+ e++a rl+r n+r +a
  EHT99795.1 534 EAAETGEKFEDNALPWDSITAATYAKTGDVKALVPQLTKEHDERIAKDREFQYIMKDIARFNAMKDKrNIVSLNLAQREKENHEDDALRLERINARYQA 632
                 689***************************************************************99******************************* PP

     DUF3340 100 kglkplksl.lleknlekeeelekedekeaeeddpkdkekkDiylrEaanIlaDli 154
                 +g+kplksl +l                      pkd++++D+yl+E+++I++Dl+
  EHT99795.1 633 EGKKPLKSLdDL----------------------PKDYKEPDPYLDETVKIANDLA 666
                 *******88555......................********************97 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.3   1.7e-17     5e-14       5      82 .]     239     319 ..     235     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.7e-17
                 ETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETT.....EETTTSHHHHHHHHHHTTTS.EEEEEEE CS
         PDZ   5 eke.grgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNg.....vdvenvsheeavqaikgskg.kvtLtil 82 
                 e++ + +g+G+ l++++d       +++++++gg+a++++ + vGD+I++v+      +dv +++++++v++ikg+kg kv+L+il
  EHT99795.1 239 EMSlSLEGIGAVLQMDDD-----YTVINSMVAGGPAAKSKaITVGDRIVGVGEpgkpmEDVIGWRLDDVVAKIKGPKGsKVRLEIL 319
                 4555899*******9888.....9*********99999999*******************************************95 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6   3.9e-09   1.2e-05       1      54 [.     259     318 ..     259     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.9e-09
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNG.....qpveglsladvaallrgsagesvvlvv 54 
                 v+ + ++g+PA++   + vGD+i+ v+      ++v+g+ l+dv+a ++g+ g++v+l++
  EHT99795.1 259 VINSMVAGGPAAKSKaITVGDRIVGVGEpgkpmEDVIGWRLDDVVAKIKGPKGSKVRLEI 318
                 68899********888***********666666889**********************97 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   2.6e-06    0.0078       2      43 ..     246     286 ..     245     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.6e-06
                 ...XX------..-EEEEEE-TTSGGGGT..--TT-EEEEETT CS
       PDZ_2   2 ylGvsvsdeedtggvlvvsVkeggPaakag.lkagDvilkvdg 43 
                 ++G+ +++++d    ++ s   ggPaak++ +  gD+i+ v++
  EHT99795.1 246 GIGAVLQMDDD--YTVINSMVAGGPAAKSKaITVGDRIVGVGE 286
                 69********9..9**************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4629.46
//
Query:       EHT99796.1  [L=293]
Description: putative endopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-39  136.1   0.2    2.1e-39  135.3   0.2    1.4  1  Peptidase_M48    Peptidase family M48
    3.4e-05   23.2   0.0    6.5e-05   22.3   0.0    1.5  1  Peptidase_M56    BlaR1 peptidase M56
     0.0021   17.9   0.0     0.0033   17.2   0.0    1.3  1  SprT-like        SprT-like family
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.019   14.5   0.1    1.2  1  Peptidase_M1     Peptidase family M1 domain
       0.02   14.8   0.6      0.045   13.7   0.5    1.6  1  Myc_target_1     Myc target protein 1
        0.1   12.3   0.2        0.1   12.3   0.2    2.2  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.2   7.1e-43   2.1e-39       3     194 ..      74     288 ..      72     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 7.1e-43
                    -SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHH.HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M48   3 reaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvs.livsllasillll 96 
                    +e++l e++++ a+++g+  ++++v+++++p++NAFa+g   n   +++++gLl q++s++e +aVl+HE++Hi++++++++ li+++++++++++
     EHT99796.1  74 TERWLLETISQQARQVGI--AMPQVAIYHAPDINAFATGARRNAsLVAVSTGLL-QNMSRDEAEAVLAHEVAHIANGDMITMtLIQGVVNTFVIFV 166
                    789***************..*********************9999*********.***************************89999999999987 PP

                    HHHHH...TT-SHHHHHT.T--S---HHHHHHHHHHTT...........HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH. CS
                    xxxxx...xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Peptidase_M48  97 glall...israeedaag.afldalavliglliillfl...........alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs. 176
                     ++l+    +++++++ g  +   ++ ++++++++l+l           ++SR rE+ AD+ +++l+  +++++ al+ l+  +e q+ s+     
     EHT99796.1 167 SRILAqiaAGFMSGNRDGeESSNGNPLVYFAVSMVLELvfgilasiitmWFSRHREFHADAGSAKLVG-REKMIAALQCLKTSYEPQEPSSMMAFc 261
                    776541114444444444144455677777788888889*****************************.****************95544443334 PP

                    .........HHS-SS--HHHHHHHHHH CS
                    .........xxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 177 .........ellstHPplleRiqalke 194
                             el+++HPpl +Ri+al++
     EHT99796.1 262 ingkgksfsELFMSHPPLDKRIEALRS 288
                    555555566****************96 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.2e-08   6.5e-05     160     220 ..      96     157 ..      44     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.2e-08
  Peptidase_M56 160 ikirlsssidsPavlgllkp..rIvlPadflkklsdeeleyillHElaHlkrkDllvnllvav 220
                    ++i+ ++ i+  + +g+ ++   + +++ +l+++s +e e +l+HE aH++++D++   l++ 
     EHT99796.1  96 VAIYHAPDINA-FATGARRNasLVAVSTGLLQNMSRDEAEAVLAHEVAHIANGDMITMTLIQG 157
                    66666666665.444554431156788999**************************9999875 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0033      30      80 ..     105     150 ..      68     156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
   SprT-like  30 nttaGranlkratvrhhasIeLseklldsrsedrllntLaHElcHlal.fvi 80 
                 n  a  a+       +   +  s+ ll++ s+d+ + +LaHE++H+a+  +i
  EHT99796.1 105 NAFATGARR------NASLVAVSTGLLQNMSRDEAEAVLAHEVAHIANgDMI 150
                 444444433......448889999***********************96555 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   6.4e-06     0.019      32      87 ..     105     153 ..      77     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.4e-06
                   SSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEES CS
  Peptidase_M1  32 pdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmk 87 
                   + f++gA  n +l+ +    ll +       ++ +++ v aHE+aH   G+++tm 
    EHT99796.1 105 NAFATGARRNASLVAVSTG-LLQN------MSRDEAEAVLAHEVAHIANGDMITMT 153
                   5577788888887766544.4444......5778999*****************96 PP

>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   1.5e-05     0.045      23      51 ..     194     222 ..     184     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
  Myc_target_1  23 laFcvSmvvGLllgaliyvlltwlsrrra 51 
                   + F+vSmv+ L+ g+l  ++  w+sr+r 
    EHT99796.1 194 VYFAVSMVLELVFGILASIITMWFSRHRE 222
                   67*************************95 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4      0.29   8.6e+02     158     162 ..      31      35 ..       2      82 .. 0.52
   2 ?   12.3   0.2   3.5e-05       0.1      42     109 ..     141     218 ..     127     245 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
  Cation_ATPase_C 158 sleew 162
                      s++ +
       EHT99796.1  31 SVQGL 35 
                      22222 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.5e-05
  Cation_ATPase_C  42 kepliskkmlrriliqgllqalvtllvffltll......lfgisekenkls........snyaqtma..Fitlvlsqifnalnl 109
                       +++ ++ m++++liqg++ ++v+++  +l++       +   + +    +        +++a +m+  +++ +l++i+ ++ +
       EHT99796.1 141 VAHIANGDMITMTLIQGVVNTFVIFVSRILAQIaagfmsG---NRDG---EessngnplVYFAVSMVleLVFGILASIITMWFS 218
                      5799**********************99888874432220...2222...1223455654444444411344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2130.12
//
Query:       EHT99797.1  [L=96]
Description: putative transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00031   19.8   4.8    0.00035   19.6   4.8    1.1  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.042   14.0   2.2      0.053   13.6   2.1    1.3  1  FUSC_2    Fusaric acid resistance protein-like
      0.097   12.4   3.5       0.12   12.1   3.5    1.0  1  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   4.8   5.9e-08   0.00035      93     169 ..       8      87 ..       3      96 .] 0.88

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.9e-08
       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfl 169
                 +l+G+g g++ +  +  i   +p+++ g a g+l+++  lG   g++l +l+  +lg    +a+ +++a++s  a++l l
  EHT99797.1   8 MLCGAGFGLFQSPNNHTIITSAPRQRSGGASGMLGTARLLGQSSGAALVALMFNWLGndgTHAALLLAAGFSTAAALLSL 87 
                 699***********************************************9999**9999***************99733 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.1   8.9e-06     0.053      22      76 ..      28      82 ..       7      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.9e-06
      FUSC_2 22 aivlsptlgasltravqRilGtvlGavlallllyllpgnlalallvfllvfliaf 76
                 +  +++ gas++ + +R+lG   Ga+l +l++ +l ++   a+l++ ++f +a+
  EHT99797.1 28 SAPRQRSGGASGMLGTARLLGQSSGAALVALMFNWLGNDGTHAALLLAAGFSTAA 82
                4555789**************************8888886666666666655543 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.5     2e-05      0.12      29     114 ..       7      86 ..       3      88 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
        Yip1  29 lalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkqtlsvvgyallPlilg 114
                 + l ++ +gl++s n+ +++ s+    + ++++  +   + +lg+  g++l+al +++    lg++g+ + +l ++g+++++ +l+
  EHT99797.1   7 MMLCGAGFGLFQSPNNHTIITSA--PRQRSGGASGMLGTARLLGQSSGAALVALMFNW----LGNDGTHAALLLAAGFSTAAALLS 86 
                 6788999******9999999999..434444444444444555555555555555555....*****************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 737.83
//
Query:       EHT99798.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99798.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99798.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99798.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99798.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 806.33
//
Query:       EHT99799.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHT99799.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 1102.54
//
Query:       EHT99800.1  [L=130]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-13   48.7   9.0    1.6e-12   48.0   9.0    1.4  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
    0.00095   19.0   6.2     0.0012   18.7   6.2    1.0  1  FAM184           Family with sequence similarity 184, A and B
     0.0013   19.0   6.1      0.014   15.8   1.2    2.5  2  Csm1_N           Csm1 N-terminal domain
     0.0025   16.5   6.8     0.0026   16.4   6.8    1.0  1  FUSC             Fusaric acid resistance protein family
     0.0028   17.4   2.9      0.034   13.9   0.5    2.0  2  LXG              LXG domain of WXG superfamily
     0.0042   16.3   2.5     0.0052   16.0   2.5    1.2  1  Phage_HK97_TLTM  Tail length tape measure protein
  ------ inclusion threshold ------
       0.01   15.6  10.8      0.013   15.4  10.8    1.0  1  ERM              Ezrin/radixin/moesin family
      0.015   14.5   2.3      0.016   14.4   1.5    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.027   14.5  10.9      0.037   14.1  10.9    1.1  1  DHR10            Designed helical repeat protein 10 domain
      0.028   13.7   1.7      0.034   13.4   1.7    1.0  1  TMPIT            TMPIT-like protein
      0.029   14.7   6.2      0.051   13.9   6.2    1.3  1  Troponin         Troponin
      0.032   13.8   3.9      0.036   13.6   3.9    1.0  1  Exonuc_VII_L     Exonuclease VII, large subunit
      0.042   13.7   2.3      0.057   13.2   2.3    1.2  1  RD3              RD3 protein
      0.072   13.0   3.5      0.092   12.6   3.5    1.1  1  PCRF             PCRF domain
      0.084   13.1  10.2       0.35   11.1   2.1    2.1  2  ATG16            Autophagy protein 16 (ATG16)
      0.093   12.3   0.6       0.24   10.9   0.0    1.8  2  DUF3145          Protein of unknown function (DUF3145)
       0.11   12.0   7.9        0.3   10.6   7.9    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
       0.14   12.2   8.8       0.53   10.4   0.2    2.9  3  DUF1192          Protein of unknown function (DUF1192)
       0.16   11.8   3.4        1.4    8.7   0.1    2.0  2  Mt_ATP-synt_D    ATP synthase D chain, mitochondrial (ATP5H)
       0.16   12.2   1.7         12    6.3   0.1    2.1  2  DUF948           Bacterial protein of unknown function (DUF94
       0.18   11.5  10.9       0.36   10.4  10.9    1.5  1  Lebercilin       Ciliary protein causing Leber congenital ama
       0.18   12.2   7.2      0.047   14.0   3.1    2.0  2  HalX             HalX domain
       0.25    9.9   1.9        0.3    9.6   1.9    1.1  1  FapA             Flagellar Assembly Protein A
       0.26   11.6   8.0       0.35   11.2   8.0    1.2  1  OmpH             Outer membrane protein (OmpH-like)
       0.36   10.8   3.2       0.37   10.8   1.3    1.7  2  DUF4446          Protein of unknown function (DUF4446)
       0.38   10.8   3.7        3.6    7.7   0.0    2.6  2  G-gamma          GGL domain
       0.51   10.1   4.5        1.1    9.0   4.5    1.5  2  USP8_interact    USP8 interacting
       0.55   10.9  10.5    4.7e+02    1.5  10.5    2.8  1  SlyX             SlyX
       0.59   10.2   9.2        1.1    9.3   0.7    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
       0.87    9.9   8.2       0.39   11.0   1.8    2.1  2  DUF641           Plant protein of unknown function (DUF641)
        3.7    8.1  13.5        4.7    7.8   2.1    2.6  2  MerR-DNA-bind    MerR, DNA binding
          4    7.0   8.7         11    5.5   8.7    1.7  1  HAUS6_N          HAUS augmin-like complex subunit 6 N-terminu
        5.1    7.6  11.0         72    3.9  10.6    2.5  1  ZapB             Cell division protein ZapB


Domain annotation for each model (and alignments):
>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   9.0     3e-15   1.6e-12       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 3e-15
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99800.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   6.2   2.2e-06    0.0012     114     197 ..      10      97 ..       7     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.2e-06
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyEe 197
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ +
  EHT99800.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 67888888877776555777788***************9862678999**********************************999865 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.2   2.5e-05     0.014      21      56 ..      22      57 ..      11      73 .. 0.80
   2 ?    5.5   0.6     0.041        22      33      53 ..      71      91 ..      67      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-05
      Csm1_N 21 lvsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                 + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99800.1 22 TIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                57888899************************9864 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.041
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99800.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   6.8   4.8e-06    0.0026     213     294 ..       4      89 ..       1     117 [. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.8e-06
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHT99800.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 44889***********************************999**********999996667888888888888888888877766 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   6.3e-05     0.034     152     193 ..      17      58 ..       4      65 .. 0.86
   2 ?    4.6   0.1     0.043        23      97     131 ..      63      97 ..      62     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.3e-05
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99800.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.043
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99800.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 57788888999999999999999999999987666 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.5   9.6e-06    0.0052      47     106 ..      34      90 ..      14      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.6e-06
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99800.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      677789*****************************9888...899************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4  10.8   2.4e-05     0.013      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-05
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99800.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66889999999**********************************999999887335577789*******************9875 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.5     3e-05     0.016      24      76 ..      37      91 ..      33      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99800.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  10.9   6.7e-05     0.037      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-05
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99800.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 66789******************************************988999*************************985 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.7   6.3e-05     0.034      12      92 ..      13      95 ..       6     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.3e-05
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99800.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677889999999999999999999999999999999999997744224445555666666555555556777777665 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   6.2   9.3e-05     0.051      46     120 ..       9      97 ..       3     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHT99800.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   3.9   6.6e-05     0.036     144     228 ..      10      95 ..       3     128 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleek 228
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e+
    EHT99800.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQ 95 
                   33444555555555666666677789999999999988886655439999999***********************88844.22222 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.3   0.00011     0.057      45     127 ..      16      95 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
         RD3  45 keeeerkaetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevlaenevevkeivelfksvlkevleer 127
                  +e++   ++ ++Y++l s+        ase ++L  l ak++  + gk  +++re++a +  e++e +++++  + evl e+
  EHT99800.1  16 LQEQQTTIRKMAEYNRLLSQR---VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQ 95 
                 567777788899******966...455799*************************************9999999999998776 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.5   0.00017     0.092      19      96 ..      18      96 ..       5     100 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                TTGGGSSSTTHHHHHTHHHHHHH.HHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSS CS
        PCRF 19 edqekakklskelaeleeiveal.eeleealedleeakell..eedeelaelaeeeleelekeleeleeelkklLlpkden 96
                e+q++++k+++  + l++ v+a+ +e++++++ +++++++   ++ e+l+e    +++e+e+++++l+ee+ ++L   +++
  EHT99800.1 18 EQQTTIRKMAEYNRLLSQRVAAYaSEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLG--EQH 96
                33334444333333344444433134555555555555565334778999999999******************99..433 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   0.00065      0.35     109     157 ..       7      55 ..       4      57 .. 0.95
   2 ?    6.5   1.8     0.016       8.9      69      95 ..      67      93 ..      55     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00065
       ATG16 109 eelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlq 157
                 +e ++l++ l+e++++++++ + ++ l+++++  + e++ +++lv +lq
  EHT99800.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQ 55 
                 68899****************************************9998 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.016
       ATG16 69 nskqsakiqsleqklaqlreelaelyk 95
                 +k++ ++ + e+++++l+ee+ae++ 
  EHT99800.1 67 REKTARQVREAEERISALQEEMAEVLG 93
                335567789999999999999998875 PP

>> DUF3145  Protein of unknown function (DUF3145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.3   7.2e+02     108     127 ..      10      28 ..       7      59 .. 0.71
   2 ?   10.9   0.0   0.00044      0.24     106     150 ..      67     111 ..      60     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
     DUF3145 108 drlrallekaaedeeelaee 127
                 +rlrall++++++ +++a e
  EHT99800.1  10 ARLRALLQEQQTTIRKMA-E 28 
                 688888887766555554.3 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00044
     DUF3145 106 sEdrlrallekaaedeeelaeeldkllGtawDeeL.epfRsagega 150
                  E+  r++ e a+e+ ++l+ee++++lG++ D +L +p R+++   
  EHT99800.1  67 REKTARQVRE-AEERISALQEEMAEVLGEQHDPALpQPLRQSSARK 111
                 5666666665.77999******************966888887665 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.9   0.00055       0.3      69     152 ..      12      97 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00055
  HAUS-augmin3  69 levileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   l++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99800.1  12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   556677777777777777777788888999999999999999998874477888899************************98766 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       6.3   3.4e+03      36      47 ..       9      20 ..       7      27 .. 0.72
   2 ?   10.4   0.2   0.00097      0.53      25      45 ..      33      53 ..      32      58 .. 0.90
   3 ?    6.2   0.9     0.019        10      22      37 ..      74      89 ..      70      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.3
     DUF1192 36 IaRleaaiakkk 47
                 aRl+a +++ +
  EHT99800.1  9 NARLRALLQEQQ 20
                578888777655 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00097
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99800.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.019
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99800.1 74 VREAEERISALQEEMA 89
                6788**********87 PP

>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0026       1.4      79     124 ..       5      51 ..       1      61 [. 0.77
   2 ?    4.1   1.2     0.072        39      87     119 ..      58      90 ..      51      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0026
                    ----TTT.THHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-XX CS
  Mt_ATP-synt_D  79 ypedkyt.eevdaeekevkkeikefkeeskkrieelekeleklksll 124
                    yp ++ +  ++ +e+++  ++++e++    +r++ + +e+++lk+l+
     EHT99800.1   5 YPDENARlRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALV 51 
                    55555555556667777888899*********************986 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.072
                    HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_D  87 evdaeekevkkeikefkeeskkrieelekelek 119
                    +  + +++  ++ +  + e+++ri+ l++e+++
     EHT99800.1  58 QFGKSSEKLREKTARQVREAEERISALQEEMAE 90 
                    556778888999999999999999999999986 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.036        20      23      67 ..      11      54 ..       9      59 .. 0.78
   2 ?    6.3   0.1     0.022        12      26      55 ..      65      94 ..      57     100 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.036
      DUF948 23 klkktldeaaatieelekqvdpilkevedllakvnelledvnekl 67
                +l+ +l+e ++ti+++ +  + +++ v++  +++n+ l+ +  kl
  EHT99800.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINR-LKALVAKL 54
                678889999999999999999999999999999999.44444444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
      DUF948 26 ktldeaaatieelekqvdpilkevedllak 55
                k+ +++a++++e e+++ ++ +e++++l +
  EHT99800.1 65 KLREKTARQVREAEERISALQEEMAEVLGE 94
                555667777777777777777777777655 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.9   0.00067      0.36      32     109 ..       7      86 ..       3      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00067
  Lebercilin  32 kEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqe.kerelekklkekea.ellrlkdklkklkk 109
                  En  L++l   q+  ++k  + +  L+q +a   +E+  l++ + k+q  +  + ++kl+ek a +++++++ +++l++
  EHT99800.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRmQFGKSSEKLREKTArQVREAEERISALQE 86 
                 58999999999999999999999999999999999999999998888776245566666666544145555666666554 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1         3   1.6e+03      43      57 ..      11      25 ..       5      35 .. 0.50
   2 ?   14.0   3.1   8.6e-05     0.047       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 3
        HalX 43 rleelraqldetlde 57
                rl +l ++  +t+  
  EHT99800.1 11 RLRALLQEQQTTIRK 25
                333333333333333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 8.6e-05
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHT99800.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.9   0.00056       0.3     336     403 ..      27      90 ..       5     101 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00056
        FapA 336 keklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelke 403
                  e  + l +++ ++ +e+++lk+ ++kl+ ++  k      ++  +k+ ++  + +e++++l+ee++e
  EHT99800.1  27 AEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGK----SSEKLREKTARQVREAEERISALQEEMAE 90 
                 22224556666666888888888877777755444....44555555555555555566666555553 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   8.0   0.00064      0.35       9      84 ..      14      93 ..       9     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00064
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelq 84
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l 
  EHT99800.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLG 93
                57778888888999999999*********************966655.234666666666677777777774444444444 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.63   3.4e+02      40      74 ..       9      43 ..       6      46 .. 0.74
   2 ?   10.8   1.3   0.00068      0.37      19      72 ..      39      92 ..      32      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.63
     DUF4446 40 gksleellkekleeveelkeeseelekeieeleek 74
                ++ l  ll+e+ ++++++ e ++ l++++++  ++
  EHT99800.1  9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                56677888888888888888888888888776665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00068
     DUF4446 19 vllvklkklkkkykklmkgkdgksleellkekleeveelkeeseelekeieele 72
                +   ++++lk  + kl++ + gks e+l +++ ++v+e++e+ ++l++e++e+ 
  EHT99800.1 39 AYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVL 92
                5677899*****************************************999875 PP

>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4     0.045        24       2      32 ..      35      66 ..      34      73 .. 0.89
   2 ?    7.7   0.0    0.0067       3.6      14      52 ..      66     108 ..      60     112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.045
     G-gamma  2 qlklklkreieqLkkeLkr.erikvSkAceel 32
                q++ ++  ei++Lk  +++ +r++  k++e+l
  EHT99800.1 35 QRVAAYASEINRLKALVAKlQRMQFGKSSEKL 66
                77889999***************999999987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0067
     G-gamma  14 LkkeLkr...eri.kvSkAceelidYvestkDpllpevwgpps 52 
                 L+++ +r   e   ++S   ee+ +   +++Dp+lp + +++s
  EHT99800.1  66 LREKTARqvrEAEeRISALQEEMAEVLGEQHDPALPQPLRQSS 108
                 5555444333344477888899999999********9966655 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.5    0.0021       1.1       2      49 ..      12      61 ..      11      91 .. 0.79
   2 ?    0.2   0.2       1.1   5.8e+02       5      20 ..      73      88 ..      54     105 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0021
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHT99800.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgK 61
                   9***************************************9998766553 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
  USP8_interact  5 lvqkqqqkiaelkkev 20
                   +v++ +++i+ l++e+
     EHT99800.1 73 QVREAEERISALQEEM 88
                   2222222333333322 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  10.5      0.87   4.7e+02      22      53 ..      12      43 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.87
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99800.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                66778899999999999999999999776655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.7     0.002       1.1      23      69 ..      11      57 ..       7      61 .. 0.87
   2 ?    4.8   2.4     0.051        28      45      70 ..      63      88 ..      60      91 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHT99800.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                5666778899*************************999999999875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.051
  TMF_DNA_bd 45 lekeikelkkkleklekeleeleerl 70
                +ek  +++ +++++ e+ ++ l+e++
  EHT99800.1 63 SEKLREKTARQVREAEERISALQEEM 88
                56666666666666666666666655 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   0.00072      0.39      71     121 ..       7      57 ..       1      65 [. 0.87
   2 ?    2.4   2.0      0.34   1.8e+02      88     119 ..      61      92 ..      53      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00072
      DUF641  71 aeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeks 121
                  e+++l+a +qeq+  ++ +    + l + + a  sei++Lk+ ++++++ 
  EHT99800.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57 
                 67899*************************************988888765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.34
      DUF641  88 ktyeitvkkleaelkakdseieeLkekLeeae 119
                 k+ e+  +k  +++++ ++ i+ L+e+++e+ 
  EHT99800.1  61 KSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 66788889999999999999999999999875 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.0     0.028        15      21      64 ..      13      56 ..       9      57 .. 0.85
   2 ?    7.8   2.1    0.0087       4.7      32      60 ..      61      89 ..      58      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.028
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHT99800.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   788866666777778888***********************997 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0087
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHT99800.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   6789999*****************98655 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.7      0.02        11     156     226 ..      12      76 ..       7     112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.02
     HAUS6_N 156 lrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkae...............keaakkekkeasedaeeekikkvrn 226
                 lr +l+e ++    ++k+ e+ +ll++++ + ++e+ +l+a++  +               k                   ++vr+
  EHT99800.1  12 LRALLQEQQTT---IRKMAEYNRLLSQRVAAYASEINRLKALVA-KlqrmqfgksseklreK-----------------TARQVRE 76 
                 56667777777...899999999999999999999999888775.22444444333333322.................3333333 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.6      0.13        72      18      69 ..      21      88 ..      10      99 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.13
        ZapB 18 dtitlLqmeieeLkeeneelkeenreleeeneqlk................eereawqerlkkLLgkl 69
                +ti+++ + ++ L ++++++++e+++l++ + +l+                 +  + +er+++L +++
  EHT99800.1 21 TTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQrmqfgksseklrektaRQVREAEERISALQEEM 88
                57888888888888888888888888884444444444555555555666633334455555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2182  (0.121702); expected 358.6 (0.02)
Passed bias filter:                     1090  (0.0607954); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 1083.44
//
Query:       EHT99801.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99801.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99801.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99801.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99801.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99801.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99801.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHT99801.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99801.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99801.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99801.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99801.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHT99801.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99801.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99801.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHT99801.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99801.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99801.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2338.41
//
Query:       EHT99802.1  [L=389]
Description: membrane component of an ABC superfamily protein transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-19   71.2   1.4    4.6e-15   56.2   0.1    2.9  3  HlyD_3           HlyD family secretion protein
    8.5e-13   47.9   1.8    1.1e-10   41.2   0.2    3.6  3  Biotin_lipoyl_2  Biotin-lipoyl like
    3.2e-12   46.1   2.4    1.2e-09   37.7   2.0    3.0  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    5.4e-10   39.0   0.2    8.7e-10   38.4   0.2    1.3  1  HlyD             HlyD membrane-fusion protein of T1SS
    0.00029   20.6   2.2      0.031   14.1   0.2    3.0  3  Biotin_lipoyl    Biotin-requiring enzyme
     0.0012   18.6   3.9     0.0025   17.6   3.9    1.5  1  OEP              Outer membrane efflux protein
  ------ inclusion threshold ------
       0.27   11.4   1.8        4.9    7.3   0.0    3.3  4  Trans_reg_C      Transcriptional regulatory protein, C termin


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.7e-05      0.14       7      34 ..      64      91 ..      58     120 .. 0.82
   2 ?   -1.2   0.0       1.3   3.4e+03      64      94 ..     191     221 ..     167     235 .. 0.50
   3 !   56.2   0.1   1.8e-18   4.6e-15       1      96 [.     238     342 ..     238     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.7e-05
      HlyD_3  7 dGvvvelnveegevvqagdelleiippd 34
                +G+v++lnv eg++v++g+ l+++ p++
  EHT99802.1 64 GGIVKQLNVHEGDIVEKGQILATLDPTR 91
                699*********************9953 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
      HlyD_3  64 gsdytlkgkierisptv..daktgaykvevsle 94 
                  s   l+gki++   +    a + ++k  ++l+
  EHT99802.1 191 VS--DLRGKIDEARNDYlvRAHEEQVKNNAELD 221
                 22..66666666666332233333333333333 PP

  == domain 3  score: 56.2 bits;  conditional E-value: 1.8e-18
      HlyD_3   1 tlrApvdGvvvelnv.eegevvqagdelleiipp.dtllveakvpaadlgsikkkgqkvtlkld..qgsdy.tlkgkierisptv..daktg.....ay 87 
                 tl++pv G+v++++v ++g v+++g +++ei+p  d+ll+e +++++d++ i+ +g ++ +k++  ++s y  l+g +e +sp++  d+        +y
  EHT99802.1 238 TLTSPVRGIVKDIQVtTVGGVLEPGGKMMEIVPLeDQLLIETRINPRDIAYIR-PGLPAVVKVTayDSSIYgDLPGVVETVSPDTlhDE--VkrdqfYY 333
                 699******************************769****************7.**********9999999************774422..22232466 PP

      HlyD_3  88 kvevslenp 96 
                 +v+v+ ++ 
  EHT99802.1 334 RVYVRTQKA 342
                 666665544 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.2   4.3e-14   1.1e-10       5      45 ..      54      99 ..      51     104 .. 0.82
   2 ?    0.6   0.1       0.2   5.2e+02       4      19 ..     238     253 ..     235     254 .. 0.89
   3 ?    2.8   0.0     0.042   1.1e+02       7      22 ..     353     368 ..     352     369 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 4.3e-14
  Biotin_lipoyl_2  5 Iaapv....sG.rVaqlnVkdGqrVkaGdvLaelDsralqlalaqa 45
                     I a+v    +G  V+qlnV++G+ V++G++La+lD++++q     +
       EHT99802.1 54 IRAQVidslDGgIVKQLNVHEGDIVEKGQILATLDPTRFQSNFGEV 99
                     666666666777**************************99655555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.2
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVk 19 
                      ++++pv G V+ + V+
       EHT99802.1 238 TLTSPVRGIVKDIQVT 253
                      6899*********997 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.042
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGq 22 
                      + v+G Va + +k Gq
       EHT99802.1 353 PIVPGMVANVEIKTGQ 368
                      668************9 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   2.0   4.7e-13   1.2e-09      22     192 ..      59     321 ..      43     322 .. 0.81
   2 ?    3.4   0.0     0.014        37      26      53 ..     310     337 ..     304     343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.7e-13
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................................................... CS
    HlyD_D23  22 vsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.................................................... 68 
                 + +   G v++l+v+ +gd V+kGq La+l+ + + +   e  +  +                                                    
  EHT99802.1  59 IDSLDGGIVKQLNVH-EGDIVEKGQILATLDPTRFQSNFGEVQARVRtlrasserlsaelsgtplafsaetlkepqlvarekqlyesrrrnltetisnl 156
                 445556889999999.**************999887777776666667778889999999999999988888888888888888888777777777777 PP

                 ...................................XXXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ...................................akkklkkke............lleaarerLrllgvseeqiaelektgkvqktvtvkapisGvVt 120
                                                    +       +            l++a +e+ ++    ++q++  + +++  ++ t+++p+ G+V 
  EHT99802.1 157 qqslrlvqdelrlteplvakgaagqvevirlrrqvS-------DlrgkidearndyLVRAHEEQVKNNAELDAQLQVAAGKEDLLTRATLTSPVRGIVK 248
                 777777777777777776666666655555555540.......0555555566678************999**************************** PP

                 XXXXXX.XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 121 eknvre.Gqyvqpgdtlftiadl.stVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpet 192
                 + +v++ G +++pg ++++i  l +++ +e  +  +++a++++g ++ v+v+a++  ++ G +  + +tv p+t
  EHT99802.1 249 DIQVTTvGGVLEPGGKMMEIVPLeDQLLIETRINPRDIAYIRPGLPAVVKVTAYDS-SIYGDLPGVVETVSPDT 321
                 ***9744***************9458****************************87.67777777777777766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  26 veGwveklyvnatgdkVkkGqpLaelys 53 
                 + G ve++  +++ d+Vk++q  +++y 
  EHT99802.1 310 LPGVVETVSPDTLHDEVKRDQFYYRVYV 337
                 78*********************99997 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2   3.4e-13   8.7e-10       3      63 ..      29     371 ..      27     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.4e-13
                 EEEEEEEEEE......................................................................................... CS
                 xxxxxxxxxx......................................................................................... RF
        HlyD   3 avfvawaala......................................................................................... 12 
                 + f++wa +a                                                                                         
  EHT99802.1  29 VLFLIWAHFAildevtvgtgkvtpsiraqvidsldggivkqlnvhegdivekgqilatldptrfqsnfgevqarvrtlrasserlsaelsgtplafsae 127
                 66999999999999999999999**************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  EHT99802.1 128 tlkepqlvarekqlyesrrrnltetisnlqqslrlvqdelrlteplvakgaagqvevirlrrqvsdlrgkidearndylvraheeqvknnaeldaqlqv 226
                 *************************************************************************************************** PP

                 ........................................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB..... CS
                 ........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
        HlyD  13 ........................................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd..... 50 
                                                                          +d+ ++r+g+p+ v+++A+  + +g+ +gvV ++spd     
  EHT99802.1 227 aagkedlltratltspvrgivkdiqvttvggvlepggkmmeivpledqllietrinPRDIAYIRPGLPAVVKVTAYDSSIYGDLPGVVETVSPDtlhde 325
                 **********************************************************************************************88888 PP

                 .................................EEEEEEEEEEEET CS
                 .................................xxxxxxxxxxxxx RF
        HlyD  51 .................................rvpvrvvvekaqg 63 
                                                  + +v++++++++ 
  EHT99802.1 326 vkrdqfyyrvyvrtqkaeltnragrrfpivpgmVANVEIKTGQKSV 371
                 8888888888865555555555555555555555555555555555 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   1.2e-05     0.031      45      73 .]      59      87 ..      47      87 .. 0.89
   2 ?    4.7   0.1      0.01        26      44      73 .]     238     268 ..     235     268 .. 0.78
   3 ?   -1.3   0.0      0.77     2e+03      51      63 ..     357     369 ..     324     376 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                   EEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 45 ieapkaGvvkeilvkeGdtvevgdllaki 73
                   i + + G+vk++ v eGd ve g++la++
     EHT99802.1 59 IDSLDGGIVKQLNVHEGDIVEKGQILATL 87
                   77888999999999999999999999986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.01
                    EEEBSSSEEEEEESST.TTEEE-TTCEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvk.eGdtvevgdllaki 73 
                    ++++p++G+vk+i v  +G  +e g  +++i
     EHT99802.1 238 TLTSPVRGIVKDIQVTtVGGVLEPGGKMMEI 268
                    799**********885267777777777765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.77
                    EEEEEESSTTTEE CS
  Biotin_lipoyl  51 GvvkeilvkeGdt 63 
                    G v+ + +k G++
     EHT99802.1 357 GMVANVEIKTGQK 369
                    7777777777776 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   3.9   9.9e-07    0.0025     118     178 ..     147     207 ..     133     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.9e-07
         OEP 118 llakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlql 178
                 +++ e++  ++++l+l ++ l+l+e + ++G++ +++v++ +++++++r ++ ea++++ +
  EHT99802.1 147 RNLTETISNLQQSLRLVQDELRLTEPLVAKGAAGQVEVIRLRRQVSDLRGKIDEARNDYLV 207
                 56778899**************************************************975 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0019       4.9      15      55 ..      68     108 ..      65     115 .. 0.92
   2 ?   -1.6   0.0       1.2     3e+03      40      59 ..     143     162 ..     132     177 .. 0.76
   3 ?    1.0   0.1      0.17   4.4e+02      46      63 ..     187     203 ..     163     213 .. 0.76
   4 ?   -2.1   0.0       1.6   4.1e+03      24      39 ..     316     331 ..     315     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
                  HHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHH CS
  Trans_reg_C  15 elLlenpgrvvsreeLleevwgededvddrtvdvhisrLRk 55 
                  + L  ++g +v + ++l  + + +++++   v++ +++LR 
   EHT99802.1  68 KQLNVHEGDIVEKGQILATLDPTRFQSNFGEVQARVRTLRA 108
                  567789**********************************6 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                  TSHTHHHHHHHHHHHHHHHT CS
  Trans_reg_C  40 dvddrtvdvhisrLRkkLed 59 
                  ++  r ++  is+L + L+ 
   EHT99802.1 143 ESRRRNLTETISNLQQSLRL 162
                  56778888899999888876 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.17
                  HHHHHHHHHHHHHTTTTS CS
  Trans_reg_C  46 vdvhisrLRkkLeddekk 63 
                  ++ ++s LR k++++  +
   EHT99802.1 187 LRRQVSDLRGKIDEAR-N 203
                  6778999999999943.3 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.6
                  EEEHHHHHHHHTTTTS CS
  Trans_reg_C  24 vvsreeLleevwgede 39 
                   vs ++L +ev ++++
   EHT99802.1 316 TVSPDTLHDEVKRDQF 331
                  6899999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2808.43
//
Query:       EHT99803.1  [L=458]
Description: putative type I secretion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-40  137.0  42.8    9.9e-24   84.2  13.3    2.1  2  OEP       Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2  13.3   5.5e-28   9.9e-24       2     188 .]      55     238 ..      54     238 .. 0.95
   2 !   58.9  21.5   3.1e-20   5.6e-16       6     185 ..     260     433 ..     257     435 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 5.5e-28
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqle 100
                  e++ +a ++np + +a a+i   e +l aa+++++P++sl+g+ g++  ++++g  +++ +    g+ lsq l+d+g+++ ++ ++ a +ea +  l 
  EHT99803.1  55 REAILRAFARNPKISEAAAQIYVGEGDLSAAQSAWYPQISLQGAAGRSHQTDSSGSLNNNGS---GGIMLSQLLYDFGRTNGAIDEQHALSEAYRFGLF 150
                 57888999***************************************777777666666555...********************************** PP

         OEP 101 qarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +a  q + ++ qayl+++  + +  +a+ +++++e + e+a+ r++aGl s++dvlqa+ r +  +a+++++ +ql+ a+aqL  l+g
  EHT99803.1 151 DAMTQAAKDTLQAYLEVKRYQSLAITAQTNIASLEHVREIAKMRADAGLNSQSDVLQAETRIAAMQATREQYLAQLRSAKAQLTVLTG 238
                 ************************************************************************************9998 PP

  == domain 2  score: 58.9 bits;  conditional E-value: 3.1e-20
         OEP   6 alalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarq 104
                 ++a+en+ ++++a+ + eaa++++++a++  +P++ +++++ +++n+ +++ dd+      v l+++ pl++gg  +a+ +aa+ +  aa+a  +qa++
  EHT99803.1 260 RIAYENSASVRSAQSKQEAARERVRQAQSGHWPSIKVQAGRTRYENDQRSYWDDE------VQLQVEAPLYQGGLVNAKTQAAEGERLAAQAAVQQAKL 352
                 689**************************************************99......************************************** PP

         OEP 105 qlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLey 185
                  + + +++ay+ +  a+++ ++ e +l++ae + + + + y++ + sl d+l+++++++qa ++++ a ++ ++a+ ++++
  EHT99803.1 353 AINQSASTAYAYMIGAQQRQQAGEVQLASAEHTRNVYADEYRLSKRSLNDLLSVEQDVFQADSSRIIALYDGWDATVRYAA 433
                 ************************************************99*********************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3561.29
//
Query:       EHT99804.1  [L=1506]
Description: large repetitive protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-22   77.8 128.9      5e-05   23.5   6.3   11.8 12  Big_6          Bacterial Ig domain
    4.4e-08   33.4  22.4        2.2    8.5   0.0    8.8  9  Big_3_2        Bacterial Ig-like domain
    1.2e-06   28.8   0.2         16    5.8   0.0    7.5  8  DUF4625        Domain of unknown function (DUF4625)
    6.5e-06   26.1   9.7       0.28   11.3   0.0    6.3  6  DUF1905        Domain of unknown function (DUF1905)
    1.3e-05   24.9   0.2       0.44   10.4   0.0    4.5  5  Cyanate_lyase  Cyanate lyase C-terminal domain
  ------ inclusion threshold ------
       0.11   12.6   2.4        7.6    6.7   0.0    4.6  6  OapA           Opacity-associated protein A LysM-like domain


Domain annotation for each model (and alignments):
>> Big_6  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.4   1.6e-06    0.0046      15      77 ..     275     345 ..     267     350 .. 0.78
   2 !   18.5   6.1     6e-07    0.0018      15      75 ..     378     444 ..     368     453 .. 0.76
   3 !   20.2   5.0   1.8e-07   0.00053      20      78 ..     489     548 ..     474     551 .. 0.84
   4 !   13.7   7.1   1.9e-05     0.056      22      77 ..     588     647 ..     572     652 .. 0.78
   5 !   23.5   6.3   1.7e-08     5e-05      14      80 ..     677     750 ..     667     752 .. 0.72
   6 !   18.4   8.0   6.5e-07    0.0019      15      77 ..     779     848 ..     771     854 .. 0.76
   7 !    6.5   3.4    0.0033       9.8      14      74 ..     878     944 ..     870     953 .. 0.81
   8 !    6.7   5.8    0.0029       8.8      13      73 ..     977    1042 ..     968    1052 .. 0.69
   9 !    9.8   7.2   0.00032      0.95      15      78 ..    1080    1148 ..    1072    1152 .. 0.77
  10 ?    1.7   0.6       0.1   3.1e+02      21      75 ..    1185    1251 ..    1167    1257 .. 0.64
  11 ?    0.0   0.4      0.35     1e+03      16      53 ..    1339    1377 ..    1327    1384 .. 0.73
  12 ?   -2.2   0.0       1.7   5.2e+03      20      37 ..    1448    1465 ..    1435    1493 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
       Big_6  15 ttltGk...aeagatVtvkdadgtvlgtgtadadGeFsvtlepaq...ange..tlsvvatDaagntSdaa 77 
                 ++ltG+   ae g t+ +   dg+ ++t++++adG++s++l+p      n+    + + ++D agn+ da+
  EHT99804.1 275 QVLTGRttgAEEGQTISLFVGDGAPIATAVIGADGAWSIDLTPDVlasLNDGplVFGLRVSDVAGNQTDAT 345
                 56777644479******************************998755533331256788999999998875 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6e-07
       Big_6  15 ttltGkae...agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSd 75 
                 +t+tG+a    +gatV v+  +gt+  t+ +++dG++++ ++p+        + +l v++tDaagn+ +
  EHT99804.1 378 QTITGTATsagVGATVAVTI-GGTT-LTSAVGQDGKWAIVVPPNVlglisDGQLALDVTLTDAAGNVRT 444
                 5789987533379******4.5666.566899**********99988884455589**********854 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.8e-07
       Big_6  20 kaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq..angetlsvvatDaagnt.Sdaat 78 
                 +a ag++Vtv+   gt + t  ++ +G++s+tl++a   a ++tl v++ Da gn+ S+ +t
  EHT99804.1 489 NAAAGSQVTVT--LGTRTYTTAVGTNGSWSLTLPAADltAGNQTLGVSVIDAVGNVaSNSTT 548
                 4789*******..589999**************9998767889************9455555 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.9e-05
       Big_6  22 eagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaa 77 
                  ag+tVt++   g+   +++++a+G+Fs t++p       + + t+ +++tDaagnt S+ a
  EHT99804.1 588 AAGSTVTLTV--GASQINAVVGANGTFSATVTPDIlgtlaQGNLTIGATVTDAAGNTaSTSA 647
                 5899999995..77778**************99766665466678999********944444 PP

  == domain 5  score: 23.5 bits;  conditional E-value: 1.7e-08
       Big_6  14 gttltGk...aeagatVtvkdadgtvlgtgtadadGeFsvtlepaq....ange.tlsvvatDaagntSda.atvt 80 
                 g+t++G    aeag++V+v+  +g++l t+  da+G+Fs+ l+p       +g+ t+ v++tDaagntS   at t
  EHT99804.1 677 GQTISGAvtgAEAGSRVVVTI-AGQQLVTV-TDASGNFSLGLTPTLlkglSDGTlTVGVSVTDAAGNTSSSsATAT 750
                 56666644449********96.66666664.589**********9965543333367789********76625555 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 6.5e-07
       Big_6  15 ttltGkae...agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaa 77 
                 +t+tG+a    ag+tV  + a g++++t++++adG+Fs +l+pa        + t+s+++tDa gnt S+ a
  EHT99804.1 779 QTITGTATgvaAGSTV--RLAIGNTTATAVVNADGTFSASLSPAVlstllGGNFTVSASVTDAVGNTtSTSA 848
                 6899999643366666..55689********************997764344556777789*****955555 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0033
       Big_6  14 gttltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.S 74 
                  +t++G+    a  tv+   + v+ + ++ + G +++++++a        ++t+ v+ tD +gnt S
  EHT99804.1 878 NQTISGSSSLSAGATVSATLNGVTYSTKVVSGGGWTISVPKADllsisDGAKTVAVTGTDLNGNTvS 944
                 567999998777777776666777888999*********99998888778899***********844 PP

  == domain 8  score: 6.7 bits;  conditional E-value: 0.0029
       Big_6   13 dgttltGkae..agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt 73  
                  +++t++G+a    g+ V+v+   gt++ t  ++++G++s+ +++ +         t+++++t+  gn 
  EHT99804.1  977 TTQTISGTATnaEGSLVQVT--IGTQTFTTSVNSNGTWSLPISATNlaaiaDGLYTVTASVTNGIGNS 1042
                  4567****97336999**99..5899999*************88774443122245666667777776 PP

  == domain 9  score: 9.8 bits;  conditional E-value: 0.00032
       Big_6   15 ttltGkae..agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaat 78  
                  +t++G+    +g +Vtv   +g++l t t++a+G++sv++++a          ++ v++tD  gn  ++++
  EHT99804.1 1080 ETISGTSSnaVGGRVTVN-VAGNIL-TTTVGANGTWSVSVPSATlkgisDGSHSVAVTVTDIGGNSTTTTS 1148
                  57888764227999***9.677775.669***********999955554445789**********988876 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.1
       Big_6   21 aeagatVtvk..dadgt..vlgtgtadadGeFsvtlepaq........angetlsvvatDaagntSd 75  
                  a  g++V v+   a+g+   + + t da G++s +++++           ++  +v+ tD agn  +
  EHT99804.1 1185 AAQGSRVSVTllLANGSngPTINTTTDALGRYSANFASSLlsvgglllSVNTLAKVTITDVAGNSFT 1251
                  5566776664222233201345557788888888887777665555555667778888888888654 PP

  == domain 11  score: 0.0 bits;  conditional E-value: 0.35
       Big_6   16 tltGkaeagatVtvkdadgtvlgtgta.dadGeFsvtle 53  
                   +t +a     V+++ +dg+++  +t+ +++G+ +vt++
  EHT99804.1 1339 PITEEAYSIGGVVITLEDGRQIEGATVsGSSGADTVTVN 1377
                  555556666678899999999999998677787777765 PP

  == domain 12  score: -2.2 bits;  conditional E-value: 1.7
       Big_6   20 kaeagatVtvkdadgtvl 37  
                  k+  g++Vt+ ++dg v 
  EHT99804.1 1448 KGADGSQVTLVNSDGGVW 1465
                  566789999888888765 PP

>> Big_3_2  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0055        16      94     114 ..     324     344 ..     313     352 .. 0.86
   2 !    8.1   0.1     0.001       3.1      76     114 ..     401     445 ..     353     454 .. 0.69
   3 ?    2.7   0.1     0.049   1.5e+02      65     114 ..     495     545 ..     475     552 .. 0.78
   4 !    8.3   0.1   0.00091       2.7      94     117 ..     625     647 ..     579     653 .. 0.76
   5 !    8.5   0.0   0.00075       2.2      95     115 ..     726     746 ..     699     752 .. 0.86
   6 !    6.3   0.1    0.0036        11      69     115 ..     797     847 ..     766     853 .. 0.66
   7 ?   -3.1   0.1       2.9   8.8e+03      28      50 ..    1026    1046 ..     999    1059 .. 0.51
   8 ?    0.8   0.1      0.18   5.4e+02      93     116 ..    1126    1148 ..    1077    1153 .. 0.68
   9 ?    0.3   0.0      0.27     8e+02     100     114 ..    1238    1252 ..    1233    1257 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0055
     Big_3_2  94 ldeeytlefeiyDkAGNktei 114
                  d+++ ++++++D AGN+t+ 
  EHT99804.1 324 NDGPLVFGLRVSDVAGNQTDA 344
                 38999*************987 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.001
     Big_3_2  76 tvsipv.asakksglfPss.l....deeytlefeiyDkAGNktei 114
                 t++  v ++ k++ ++P + l    d+++ l ++++D+AGN++++
  EHT99804.1 401 TLTSAVgQDGKWAIVVPPNvLglisDGQLALDVTLTDAAGNVRTV 445
                 333333558888888888765667799***************998 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.049
     Big_3_2  65 svnvsydegqgtvsipvasakksglfPss..ldeeytlefeiyDkAGNktei 114
                 +v+v + + + t +++  + ++s  +P+     ++ tl+++++D+ GN+ + 
  EHT99804.1 495 QVTVTLGTRTYTTAVGT-NGSWSLTLPAAdlTAGNQTLGVSVIDAVGNVASN 545
                 55566666666666555.899999999877778999************9875 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.00091
     Big_3_2  94 ldeeytlefeiyDkAGNkteipsq 117
                 +++++t++ +++D+AGN+ ++ s 
  EHT99804.1 625 AQGNLTIGATVTDAAGNTAST-SA 647
                 6899**************999.55 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.00075
     Big_3_2  95 deeytlefeiyDkAGNkteip 115
                 d+ +t++++++D+AGN+++ +
  EHT99804.1 726 DGTLTVGVSVTDAAGNTSSSS 746
                 8899*************9985 PP

  == domain 6  score: 6.3 bits;  conditional E-value: 0.0036
     Big_3_2  69 sydegqgtvsipvasakksglfPs...s.ldeeytlefeiyDkAGNkteip 115
                 ++ +++ t+ +  +   +++l P+     l +++t+  +++D+ GN+t+++
  EHT99804.1 797 AIGNTTATAVVNADGTFSASLSPAvlsTlLGGNFTVSASVTDAVGNTTSTS 847
                 444444444444444444445554221247799***************994 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 2.9
     Big_3_2   28 lgaaskaalrlsGitddasGids 50  
                  +g    +a + +Gi   +sG +s
  EHT99804.1 1026 DGLYTVTASVTNGI--GNSGSAS 1046
                  23333344444444..3333333 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.18
     Big_3_2   93 sldeeytlefeiyDkAGNkteips 116 
                  s d+   + ++++D  GN+t+++s
  EHT99804.1 1126 S-DGSHSVAVTVTDIGGNSTTTTS 1148
                  3.7788888999999999998854 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.27
     Big_3_2  100 lefeiyDkAGNktei 114 
                  ++++i+D AGN+ ++
  EHT99804.1 1238 AKVTITDVAGNSFTT 1252
                  6899*******9776 PP

>> DUF4625  Domain of unknown function (DUF4625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33   9.9e+02     104     127 ..     323     346 ..     313     349 .. 0.81
   2 ?    2.4   0.0     0.057   1.7e+02      93     125 ..     409     445 ..     399     452 .. 0.82
   3 !    5.8   0.0    0.0053        16      98     131 ..     517     551 ..     501     552 .. 0.85
   4 ?    3.0   0.0     0.038   1.1e+02     102     130 ..     622     650 ..     602     652 .. 0.82
   5 ?   -3.7   0.0       4.4   1.3e+04     113     121 ..     703     711 ..     702     713 .. 0.87
   6 ?    0.7   0.0       0.2   5.9e+02     107     127 ..     727     747 ..     722     751 .. 0.80
   7 ?    2.0   0.0     0.077   2.3e+02     107     131 ..     828     852 ..     817     853 .. 0.86
   8 ?    1.8   0.0     0.088   2.6e+02     104     127 ..    1125    1148 ..    1104    1152 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
     DUF4625 104 aeaGdYhlvirvtDasGneteesr 127
                  ++G   + +rv D +Gn+t   +
  EHT99804.1 323 LNDGPLVFGLRVSDVAGNQTDATI 346
                 567777899**********98765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.057
     DUF4625  93 elheeieiPad....aeaGdYhlvirvtDasGnetee 125
                 + +  i++P +    + +G+  l +++tDa+Gn + +
  EHT99804.1 409 DGKWAIVVPPNvlglISDGQLALDVTLTDAAGNVRTV 445
                 556678888888888899***************8765 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0053
     DUF4625  98 ieiP.adaeaGdYhlvirvtDasGneteesreiki 131
                 ++ P ad +aG+  l ++v+Da Gn    s++i i
  EHT99804.1 517 LTLPaADLTAGNQTLGVSVIDAVGNVASNSTTIGI 551
                 55662589*********************999987 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.038
     DUF4625 102 adaeaGdYhlvirvtDasGneteesreik 130
                  + ++G+  +  +vtDa+Gn+  +s  i 
  EHT99804.1 622 GTLAQGNLTIGATVTDAAGNTASTSAGIR 650
                 56788999999**********99998876 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 4.4
     DUF4625 113 irvtDasGn 121
                 ++vtDasGn
  EHT99804.1 703 VTVTDASGN 711
                 89******9 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.2
     DUF4625 107 GdYhlvirvtDasGneteesr 127
                 G   + ++vtDa+Gn++  s 
  EHT99804.1 727 GTLTVGVSVTDAAGNTSSSSA 747
                 6667889********998765 PP

  == domain 7  score: 2.0 bits;  conditional E-value: 0.077
     DUF4625 107 GdYhlvirvtDasGneteesreiki 131
                 G++ +  +vtDa Gn+t +s  +++
  EHT99804.1 828 GNFTVSASVTDAVGNTTSTSAGVQL 852
                 8999999**********99987765 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.088
     DUF4625  104 aeaGdYhlvirvtDasGneteesr 127 
                  + +G   ++++vtD  Gn+t +  
  EHT99804.1 1125 ISDGSHSVAVTVTDIGGNSTTTTS 1148
                  8899***************98765 PP

>> DUF1905  Domain of unknown function (DUF1905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1      0.01        31      20      60 ..     373     416 ..     353     421 .. 0.72
   2 ?    1.8   0.0     0.086   2.6e+02      35      62 ..     494     519 ..     476     533 .. 0.77
   3 ?   -4.0   0.0       5.5   1.7e+04      32      44 ..     688     700 ..     673     717 .. 0.69
   4 !    6.1   0.0    0.0037        11      36      64 ..     892     918 ..     884     925 .. 0.87
   5 !   11.3   0.0   9.2e-05      0.28      37      70 ..     993    1024 ..     975    1026 .. 0.88
   6 ?    1.9   0.1     0.078   2.3e+02      11      51 ..    1109    1150 ..    1088    1163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.01
                 -S-HHHHH.....-.SS-EEEEEEETT.EEEEEEEESSTT-EEE CS
     DUF1905  20 Pedvseel...ktggkgsvkVkatidgttfrtslfpmgkggyiL 60 
                 +  +++++    t  +    V +ti+gtt ++++  +gk + ++
  EHT99804.1 373 DTTIAQTItgtATSAGVGATVAVTIGGTTLTSAVGQDGKWAIVV 416
                 5555555555433444456799************9988766655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.086
                 EEEEEEETT.EEEEEEEESSTT-EEEEE CS
     DUF1905  35 vkVkatidgttfrtslfpmgkggyiLpv 62 
                  +V++t+++ t++t++   g+  + L +
  EHT99804.1 494 SQVTVTLGTRTYTTAVGTNGS--WSLTL 519
                 5799**********9999664..44433 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5.5
                 SS-EEEEEEETT. CS
     DUF1905  32 kgsvkVkatidgt 44 
                     +V +ti g+
  EHT99804.1 688 EAGSRVVVTIAGQ 700
                 4444666666665 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0037
                 EEEEEETT.EEEEEEEESSTT-EEEEE-H CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiLpvka 64 
                  V+at++g+t++t++++ g gg+ + v +
  EHT99804.1 892 TVSATLNGVTYSTKVVS-G-GGWTISVPK 918
                 69***************.4.788888766 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 9.2e-05
                  EEEEETT.EEEEEEEESSTT-EEEEE-HHHHHHH CS
     DUF1905   37 VkatidgttfrtslfpmgkggyiLpvkaavrkai 70  
                  V++ti+++tf+ts+ +  +g++ Lp++a+  +ai
  EHT99804.1  993 VQVTIGTQTFTTSVNS--NGTWSLPISATNLAAI 1024
                  9*************99..67*******9987776 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.078
                  -.S-EEEE--S-HHHHH..-.SS-EEEEEE.ETT..EEEEEEE CS
     DUF1905   11 kggwtfvevPedvseelktggkgsvkVkat.idgt.tfrtslf 51  
                  ++g + v+vP  + + + + g  sv V++t i+g  t +ts f
  EHT99804.1 1109 ANGTWSVSVPSATLKGI-SDGSHSVAVTVTdIGGNsTTTTSAF 1150
                  45778899********9.8889999999987888877777776 PP

>> Cyanate_lyase  Cyanate lyase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00015      0.44      20      44 ..     353     377 ..     347     403 .. 0.73
   2 ?    0.2   0.0      0.23   6.9e+02      30      43 ..     563     576 ..     549     595 .. 0.86
   3 ?   -2.3   0.0       1.4   4.1e+03      51      64 ..     688     701 ..     682     703 .. 0.81
   4 !    7.3   0.0    0.0014       4.2      27      45 ..     861     879 ..     856     901 .. 0.70
   5 ?   -2.8   0.0         2   5.9e+03      28      45 ..     962     979 ..     959     997 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
  Cyanate_lyase  20 gealkelinEkfGdGimSaidfslk 44 
                      al  ++   fGdG +Said ++ 
     EHT99804.1 353 NAALNLVVDSVFGDGTLSAIDTTIA 377
                    56788899999**********9874 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.23
  Cyanate_lyase  30 kfGdGimSaidfsl 43 
                     fGdG++  +d+ +
     EHT99804.1 563 LFGDGVLNLVDIAT 576
                    6******9999875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.4
  Cyanate_lyase  51 ekgdrvkitldGKf 64 
                    e+g rv++t+ G  
     EHT99804.1 688 EAGSRVVVTIAGQQ 701
                    6788******9975 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0014
  Cyanate_lyase  27 inEkfGdGimSaidfslkv 45 
                    +n  fGdG++Sa d+s++ 
     EHT99804.1 861 VNTVFGDGVLSAADLSTNQ 879
                    5678**********99864 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 2
  Cyanate_lyase  28 nEkfGdGimSaidfslkv 45 
                       fGd  +S  d++++ 
     EHT99804.1 962 TSLFGDNALSVADVKTTQ 979
                    5679******99998753 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   4.7e+03      11      47 ..     460     494 ..     455     505 .. 0.68
   2 ?   -0.7   0.0      0.52   1.6e+03      12      53 ..     559     597 ..     554     606 .. 0.79
   3 ?    0.0   0.0      0.31   9.2e+02      10      36 ..     657     683 ..     651     707 .. 0.81
   4 ?   -3.6   0.0       4.3   1.3e+04      12      38 ..     760     786 ..     759     807 .. 0.76
   5 ?   -1.3   0.0      0.83   2.5e+03      11      43 ..     859     887 ..     851     900 .. 0.76
   6 ?    6.7   0.0    0.0025       7.6      12      57 ..     960    1010 ..     954    1027 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
        OapA  11 ktLaqvFR.dnnLplsdvnalakveGadkplSnlksGq 47 
                  tL+ +F  dn L+++d     ++ G+   + n  +G 
  EHT99804.1 460 GTLTGLFGgDNLLNIADAAVNQQIGGT---IENAAAGS 494
                 588888963777899998877777764...44555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.52
        OapA  12 tLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvrikl 53 
                 +L+ +F d  L+l d+      +G   ++ n+ +G +v++ +
  EHT99804.1 559 SLTSLFGDGVLNLVDIATSQTLSG---VVNNVAAGSTVTLTV 597
                 79999**********988887775...667777777777766 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.31
        OapA  10 gktLaqvFRdnnLplsdvnalakveGa 36 
                   tL  +F d  L+++d  a   ++Ga
  EHT99804.1 657 TITLNPLFGDTLLNVADALAGQTISGA 683
                 569999***********9999999886 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 4.3
        OapA  12 tLaqvFRdnnLplsdvnalakveGadk 38 
                 tL+ +F d  L++++      ++G+  
  EHT99804.1 760 TLTPLFGDGVLNIAESLVTQTITGTAT 786
                 889999999999999888777877654 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.83
        OapA  11 ktLaqvFRdnnLplsdvnalakveGadkplSnl 43 
                  t+  vF d  L+ +d++    ++G+    S+l
  EHT99804.1 859 LTVNTVFGDGVLSAADLSTNQTISGS----SSL 887
                 478899************99999997....344 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0025
        OapA   12 tLaqvFRdnnLplsdvnalakveG....adkplSnlksG.qkvriklnaqg 57  
                  t++ +F dn L+++dv     ++G    a+ +l ++  G q+++ ++n++g
  EHT99804.1  960 TITSLFGDNALSVADVKTTQTISGtatnAEGSLVQVTIGtQTFTTSVNSNG 1010
                  8899******************99322224456666666455666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.40
# Mc/sec: 11250.30
//
Query:       EHT99805.1  [L=785]
Description: hypothetical protein CKS_2106 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   44.4  72.0      0.003   17.8   8.1    7.0  6  Big_6            Bacterial Ig domain
    0.00033   20.4   0.9        5.4    6.9   0.1    4.7  5  hemP             Hemin uptake protein hemP
     0.0013   18.8   3.7         20    5.3   0.1    5.2  4  DUF1905          Domain of unknown function (DUF1905)
     0.0023   18.4   6.6         50    4.4   0.0    5.6  5  HZS_alpha        Hydrazine synthase alpha subunit middle doma
     0.0072   16.2   1.4         29    4.6   0.0    3.8  4  PriA_3primeBD    3′ DNA-binding domain (3′BD)
  ------ inclusion threshold ------
      0.012   15.7   1.1         38    4.3   0.0    4.1  4  FokI_C           Restriction endonuclease FokI, catalytic dom
      0.066   13.8   5.8         30    5.3   0.0    4.7  5  DUF4772          Domain of unknown function (DUF4772)
       0.13   12.7   9.2        9.4    6.7   0.1    4.8  5  RAMA             Restriction Enzyme Adenine Methylase Associa
        0.2   11.3  13.2        4.3    6.9   0.8    3.9  3  ABC_trans_aux    ABC-type transport auxiliary lipoprotein com
       0.65   10.1  21.6       0.89    9.6   1.9    3.9  3  RcpC             Flp pilus assembly protein RcpC/CpaB
        1.3    9.0  11.8         25    4.9   0.2    4.6  4  BPL_C            Biotin protein ligase C terminal domain
        1.3    8.2   4.4         15    4.8   0.0    3.3  5  Lyx_isomer       D-lyxose isomerase
        5.5    6.7  13.5         12    5.6   0.2    4.2  5  AraC_binding_2   AraC-binding-like domain


Domain annotation for each model (and alignments):
>> Big_6  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2  12.3   0.00012      0.17      11      80 ..     195     270 ..     185     274 .. 0.77
   2 !   16.7   8.0   4.8e-06    0.0066      17      79 ..     309     374 ..     287     379 .. 0.72
   3 !   17.8   8.1   2.2e-06     0.003      17      80 ..     414     480 ..     392     484 .. 0.74
   4 !    6.5   5.5    0.0071       9.8      12      73 ..     511     576 ..     501     586 .. 0.74
   5 !   12.2   1.0   0.00012      0.16      21      73 ..     625     680 ..     612     690 .. 0.78
   6 ?    5.9   0.3     0.011        15      18      72 ..     724     781 ..     712     782 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
       Big_6  11 sedgttltGka...eagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaatvt 80 
                 +++++tl+G++   eag tVtv+   g ++ t  ++ dG++svt+++a      a   t+ v++++aag + ++++++
  EHT99805.1 195 KASDQTLSGTTtnvEAGQTVTVTL--GGQTYTTAVGTDGSWSVTVPSAAlqalaAGTATIAVTVSNAAGTAATTTETI 270
                 667889999986779********6..444468899**********877666774555689**********98886543 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.8e-06
       Big_6  17 ltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaatv 79 
                 +t + e+g tVtv+   g ++ t+t+++dG++svt+++       a   t+++++++aag + ++a++
  EHT99805.1 309 VTSNVEPGQTVTVTL--GGQTYTATVGQDGSWSVTVPAVAlqalaAGTATIEATVSNAAGTAATTAET 374
                 555679********6..45558*************96544455535556899********99877543 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 2.2e-06
       Big_6  17 ltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaatvt 80 
                 +t + e+g tVtv+   g ++ t+t+++dG++svt+++a      a   t+++++++aag + ++a+++
  EHT99805.1 414 VTSNVEPGQTVTVTL--GGQTYTATVGQDGSWSVTVPAAAlqalaAGTATIEATVSNAAGTAATTAETI 480
                 555679********6..45558**************8876667745556899********998775433 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0071
       Big_6  12 edgttltGka...eagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt 73 
                 ++++ l+G++   e+g tVt+      ++ t t+++dG +svt+++a      a  +t+ v+++++ag  
  EHT99805.1 511 ATDQILSGTTvnvEPGQTVTLGG----QTYTTTVGQDGGWSVTVPSAAlgalaAGTTTIAVSVANNAGDI 576
                 55666777765558888887763....34788************88877777555677888888888865 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 0.00012
       Big_6  21 aeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt 73 
                 + +g ++ v   +g v  +gt+d dG +svt+++a         ++++v+ +Da+gn 
  EHT99805.1 625 GTPGQQIAVNF-NG-VNYNGTVDGDGLWSVTMPAAAfdgvaDGLKSITVSTVDANGNL 680
                 56888888885.44.4479*************99995665333478***********6 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.011
       Big_6  18 tGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagn 72 
                 tG +  g +V+++  +g  + ++ ++ dG++s t+++       + ++ l v+++D+ag+
  EHT99805.1 724 TGITGDGQQVQIQL-GG-NTYNVPVNTDGSWSTTIPATDlsalpQGNNPLVVSVVDQAGK 781
                 34444567899985.33.44799***********97766666668889999999999995 PP

>> hemP  Hemin uptake protein hemP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.09   1.2e+02      10      24 ..     210     224 ..     208     224 .. 0.89
   2 ?    2.5   0.0     0.096   1.3e+02      11      24 ..     316     329 ..     313     329 .. 0.89
   3 ?    2.5   0.0     0.096   1.3e+02      11      24 ..     421     434 ..     418     434 .. 0.89
   4 ?   -2.4   0.0       3.2   4.3e+03      16      24 ..     529     537 ..     528     537 .. 0.82
   5 !    6.9   0.1    0.0039       5.4       8      23 ..     727     742 ..     724     744 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.09
                 SSSEEEEEETTEEEE CS
        hemP  10 ggrevlIeHgGetYr 24 
                  g++v++ +gG+tY+
  EHT99805.1 210 AGQTVTVTLGGQTYT 224
                 5799**********7 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.096
                 SSEEEEEETTEEEE CS
        hemP  11 grevlIeHgGetYr 24 
                 g++v++ +gG+tY+
  EHT99805.1 316 GQTVTVTLGGQTYT 329
                 789**********7 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.096
                 SSEEEEEETTEEEE CS
        hemP  11 grevlIeHgGetYr 24 
                 g++v++ +gG+tY+
  EHT99805.1 421 GQTVTVTLGGQTYT 434
                 789**********7 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.2
                 EEETTEEEE CS
        hemP  16 IeHgGetYr 24 
                 + +gG+tY+
  EHT99805.1 529 VTLGGQTYT 537
                 5789****7 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0039
                 TTSSSEEEEEETTEEE CS
        hemP   8 lgggrevlIeHgGetY 23 
                 +g+g++v+I++gG tY
  EHT99805.1 727 TGDGQQVQIQLGGNTY 742
                 789************* PP

>> DUF1905  Domain of unknown function (DUF1905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.015        20      36      60 ..     213     235 ..     194     257 .. 0.78
   2 ?    3.6   0.0      0.05        68      36      56 ..     318     338 ..     298     362 .. 0.82
   3 ?    4.5   0.0     0.027        37      36      65 ..     423     450 ..     403     467 .. 0.79
   4 ?    1.7   0.0      0.19   2.7e+02      38      55 ..     528     545 ..     511     569 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
                 EEEEEETT.EEEEEEEESSTT-EEE CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiL 60 
                  V++t++g+t++t++  +g+  + +
  EHT99805.1 213 TVTVTLGGQTYTTAVGTDGS--WSV 235
                 6999*********9999774..433 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.05
                 EEEEEETT.EEEEEEEESSTT CS
     DUF1905  36 kVkatidgttfrtslfpmgkg 56 
                  V++t++g+t+++++  +g+ 
  EHT99805.1 318 TVTVTLGGQTYTATVGQDGSW 338
                 599999999999999997753 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.027
                 EEEEEETT.EEEEEEEESSTT-EEEEE-HH CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiLpvkaa 65 
                  V++t++g+t+++++  +g  ++ + v aa
  EHT99805.1 423 TVTVTLGGQTYTATVGQDG--SWSVTVPAA 450
                 5999*********999966..555555555 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.19
                 EEEETT.EEEEEEEESST CS
     DUF1905  38 katidgttfrtslfpmgk 55 
                 ++t++g+t++t++  +g 
  EHT99805.1 528 TVTLGGQTYTTTVGQDGG 545
                 589999999999999774 PP

>> HZS_alpha  Hydrazine synthase alpha subunit middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.056        78      46      67 ..     224     245 ..     188     266 .. 0.71
   2 ?    3.9   0.0     0.054        75      46      70 ..     329     350 ..     295     369 .. 0.78
   3 ?    4.3   0.0     0.041        57      46      67 ..     434     455 ..     400     473 .. 0.81
   4 ?   -0.9   0.0       1.7   2.3e+03      46      62 ..     537     553 ..     502     560 .. 0.65
   5 ?    4.4   0.0     0.037        50      46      63 ..     743     760 ..     710     782 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.056
   HZS_alpha  46 evpveeDGSavfevpadtplll 67 
                 +++v  DGS  ++vp+    +l
  EHT99805.1 224 TTAVGTDGSWSVTVPSAALQAL 245
                 67899**********9865444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.054
   HZS_alpha  46 evpveeDGSavfevpadtplllqal 70 
                 ++ v +DGS  ++vpa     lqal
  EHT99805.1 329 TATVGQDGSWSVTVPAVA---LQAL 350
                 67899**********954...4444 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.041
   HZS_alpha  46 evpveeDGSavfevpadtplll 67 
                 ++ v +DGS  ++vpa    +l
  EHT99805.1 434 TATVGQDGSWSVTVPAAALQAL 455
                 67899**********9865444 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.7
   HZS_alpha  46 evpveeDGSavfevpad 62 
                 ++ v +DG   ++vp+ 
  EHT99805.1 537 TTTVGQDGGWSVTVPSA 553
                 45788999999999986 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.037
   HZS_alpha  46 evpveeDGSavfevpadt 63 
                 +vpv+ DGS  +++pa  
  EHT99805.1 743 NVPVNTDGSWSTTIPATD 760
                 689************976 PP

>> PriA_3primeBD  3′ DNA-binding domain (3′BD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.064        89      20      41 ..     206     227 ..     197     242 .. 0.86
   2 ?    4.5   0.0     0.023        32      21      41 ..     312     332 ..     301     344 .. 0.88
   3 ?    4.6   0.0     0.021        29      21      41 ..     417     437 ..     406     455 .. 0.87
   4 ?   -3.9   0.1       9.7   1.3e+04      24      41 ..     627     644 ..     624     644 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.064
  PriA_3primeBD  20 levkiGsrVlVpfgkrklvGiV 41 
                    ++v++G++V V +g+++++  V
     EHT99805.1 206 TNVEAGQTVTVTLGGQTYTTAV 227
                    47899***********988665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.023
  PriA_3primeBD  21 evkiGsrVlVpfgkrklvGiV 41 
                    +v++G++V V +g++++++ V
     EHT99805.1 312 NVEPGQTVTVTLGGQTYTATV 332
                    7889*************9988 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.021
  PriA_3primeBD  21 evkiGsrVlVpfgkrklvGiV 41 
                    +v++G++V V +g++++++ V
     EHT99805.1 417 NVEPGQTVTVTLGGQTYTATV 437
                    7889*************9998 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 9.7
  PriA_3primeBD  24 iGsrVlVpfgkrklvGiV 41 
                    +G+ + V+f++ ++ G V
     EHT99805.1 627 PGQQIAVNFNGVNYNGTV 644
                    69999****999999977 PP

>> FokI_C  Restriction endonuclease FokI, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.14   1.9e+02      96     117 ..     209     230 ..     190     249 .. 0.81
   2 ?    4.3   0.0     0.027        38      97     121 ..     315     341 ..     292     355 .. 0.76
   3 ?    4.2   0.0      0.03        41      97     121 ..     420     446 ..     397     460 .. 0.77
   4 ?   -0.9   0.0       1.1   1.6e+03     102     117 ..     528     543 ..     518     557 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
      FokI_C  96 keakvvtvdlggrkYtetitqs 117
                 ++ ++vtv+lgg++Yt+ ++ +
  EHT99805.1 209 EAGQTVTVTLGGQTYTTAVGTD 230
                 46799***********998764 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.027
      FokI_C  97 eakvvtvdlggrkYtetitqs..ykit 121
                   ++vtv+lgg++Yt t++q+  +++t
  EHT99805.1 315 PGQTVTVTLGGQTYTATVGQDgsWSVT 341
                 4699*************9996556666 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.03
      FokI_C  97 eakvvtvdlggrkYtetitqs..ykit 121
                   ++vtv+lgg++Yt t++q+  +++t
  EHT99805.1 420 PGQTVTVTLGGQTYTATVGQDgsWSVT 446
                 4699*************9996446665 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.1
      FokI_C 102 tvdlggrkYtetitqs 117
                 tv+lgg++Yt+t++q+
  EHT99805.1 528 TVTLGGQTYTTTVGQD 543
                 456*********9997 PP

>> DUF4772  Domain of unknown function (DUF4772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.2   1.7e+03      81     102 ..     206     227 ..     193     236 .. 0.80
   2 ?    5.3   0.0     0.022        30      82     104 ..     312     334 ..     241     345 .. 0.82
   3 ?    5.0   0.0     0.027        37      82     104 ..     417     439 ..     358     447 .. 0.87
   4 ?   -1.1   0.0         2   2.8e+03      79     103 ..     519     541 ..     457     545 .. 0.79
   5 ?    1.5   0.1      0.31   4.2e+02      85     103 ..     627     645 ..     618     648 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
     DUF4772  81 vslqpgqkvyvtYnGrevaGlv 102
                  ++  gq v+vt +G+  +  v
  EHT99805.1 206 TNVEAGQTVTVTLGGQTYTTAV 227
                 467889*********9888776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.022
     DUF4772  82 slqpgqkvyvtYnGrevaGlveq 104
                 ++ pgq v+vt +G+  ++ v q
  EHT99805.1 312 NVEPGQTVTVTLGGQTYTATVGQ 334
                 689****************9986 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.027
     DUF4772  82 slqpgqkvyvtYnGrevaGlveq 104
                 ++ pgq v+vt +G+  ++ v q
  EHT99805.1 417 NVEPGQTVTVTLGGQTYTATVGQ 439
                 678****************9976 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2
     DUF4772  79 agvslqpgqkvyvtYnGrevaGlve 103
                 + v++ pgq v++  +G+  +  v 
  EHT99805.1 519 TTVNVEPGQTVTL--GGQTYTTTVG 541
                 5678899999988..8887777765 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.31
     DUF4772  85 pgqkvyvtYnGrevaGlve 103
                 pgq++ v +nG + +G v 
  EHT99805.1 627 PGQQIAVNFNGVNYNGTVD 645
                 9*************99985 PP

>> RAMA  Restriction Enzyme Adenine Methylase Associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.48   6.7e+02      36      76 ..     208     245 ..     205     261 .. 0.79
   2 ?    6.3   0.0     0.009        12      36      60 ..     313     337 ..     301     368 .. 0.88
   3 ?    6.7   0.1    0.0068       9.4      36      61 ..     418     443 ..     406     474 .. 0.84
   4 ?   -0.3   0.1         1   1.4e+03      36      60 ..     523     545 ..     520     566 .. 0.80
   5 ?   -2.0   0.1       3.5   4.8e+03      25      80 ..     669     724 ..     655     733 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.48
        RAMA  36 lepGekllieykgrthkAdlladGkIkgqefgspsaaakal 76 
                 +e+G+++++   g+t++  + +dG+   +    psaa++al
  EHT99805.1 208 VEAGQTVTVTLGGQTYTTAVGTDGSWSVT---VPSAALQAL 245
                 6899999988889***********86643...377666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.009
        RAMA  36 lepGekllieykgrthkAdlladGk 60 
                 +epG+++++   g+t++A++ +dG+
  EHT99805.1 313 VEPGQTVTVTLGGQTYTATVGQDGS 337
                 79******88889***********7 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0068
        RAMA  36 lepGekllieykgrthkAdlladGkI 61 
                 +epG+++++   g+t++A++ +dG+ 
  EHT99805.1 418 VEPGQTVTVTLGGQTYTATVGQDGSW 443
                 79******88889***********85 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1
        RAMA  36 lepGekllieykgrthkAdlladGk 60 
                 +epG++++    g+t++ ++ +dG 
  EHT99805.1 523 VEPGQTVT--LGGQTYTTTVGQDGG 545
                 68999999..77899*****99995 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 3.5
        RAMA  25 vtlkdLleagllepGekllieykgrthkAdlladGkIk.gqefgspsaaa.kalvGnp 80 
                 +t++++ ++g l  G+  +i +  +t  A+ l++G I  g   ++  aa+ + l+Gn 
  EHT99805.1 669 ITVSTVDANGNLVTGTADVILQA-TTLPAVNLDSGAISdGVL-NNLDAASdQVLSGNT 724
                 56666655565555555553333.346788889999996664.888888844444554 PP

>> ABC_trans_aux  ABC-type transport auxiliary lipoprotein component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.021        29      87     146 ..     228     285 ..     208     288 .. 0.75
   2 ?    6.9   0.8    0.0031       4.3      85     146 ..     331     390 ..     317     393 .. 0.80
   3 ?    6.5   0.5    0.0041       5.6      85     145 ..     436     494 ..     422     496 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
                    ----SEEEEEEEEEEEEE-TTSEEEEEEEEEEETTTTEEEEEEEEEEEEE-SSSSHHHHH CS
  ABC_trans_aux  87 aeapdyrvevdvqrFesdpggqavlearwtlldakgkrvlasrsfriseplagdgyaalV 146
                    ++   ++v+v    +++ ++g+a++ +  t+++a+g+++ +++++++++p+++ g+++++
     EHT99805.1 228 GTDGSWSVTVPSAALQALAAGTATIAV--TVSNAAGTAATTTETITVEAPATQPGDPTVA 285
                    556666666666677777777777665..67777788899**************999876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0031
                    .-----SEEEEEEEEEEEEE-TTSEEEEEEEEEEETTTTEEEEEEEEEEEEE-SSSSHHHHH CS
  ABC_trans_aux  85 paaeapdyrvevdvqrFesdpggqavlearwtlldakgkrvlasrsfriseplagdgyaalV 146
                    + ++   ++v+v    +++ ++g+a++ea++  ++a+g+++ +++++++++p+++ g+++++
     EHT99805.1 331 TVGQDGSWSVTVPAVALQALAAGTATIEATV--SNAAGTAATTAETITVEAPATQPGDPTVA 390
                    3578889999999999999999999999865..555677899**************999876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0041
                    .-----SEEEEEEEEEEEEE-TTSEEEEEEEEEEETTTTEEEEEEEEEEEEE-SSSSHHHH CS
  ABC_trans_aux  85 paaeapdyrvevdvqrFesdpggqavlearwtlldakgkrvlasrsfriseplagdgyaal 145
                    + ++   ++v+v    +++ ++g+a++ea++  ++a+g+++ +++++++++p+++ g+++l
     EHT99805.1 436 TVGQDGSWSVTVPAAALQALAAGTATIEATV--SNAAGTAATTAETITVEAPATQPGDPTL 494
                    3578889999999999999999999999865..555577899*************999876 PP

>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   2.7      0.26   3.6e+02      23      98 ..     203     278 ..     197     287 .. 0.66
   2 ?    9.0   2.0     0.001       1.4      22      98 ..     307     383 ..     302     393 .. 0.76
   3 ?    9.6   1.9   0.00064      0.89      22      98 ..     412     488 ..     407     491 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.26
        RcpC  23 gvaglirpGdrVDVllt.esekedsesekt..vaelllqnvrVLavgqeeakkreeedeekkkeaetastvtLevtpeq 98 
                 g+   +++G+ V+V l  + + +++ +++   ++++  + ++ La g+  a+ + + ++ ++++a+t++t+t+e++  q
  EHT99805.1 203 GTTTNVEAGQTVTVTLGgQ-TYTTAVGTDGswSVTVPSAALQALAAGT--ATIAVTVSNAAGTAATTTETITVEAPATQ 278
                 6666788999999999853.3333333333003334445678888888..66666667777777777788999998776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
        RcpC  22 tgvaglirpGdrVDVlltesekedsesektvaelllqnv..rVLavgqeeakkreeedeekkkeaetastvtLevtpeq 98 
                 +gv   ++pG+ V+V l  ++ +++ +++ +  + +  v  + La g+  a+ +++ ++ ++++a+ta+t+t+e++  q
  EHT99805.1 307 SGVTSNVEPGQTVTVTLGGQTYTATVGQDGSWSVTVPAValQALAAGT--ATIEATVSNAAGTAATTAETITVEAPATQ 383
                 799999************555555555555555555555116677777..88888888888899999999****99877 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00064
        RcpC  22 tgvaglirpGdrVDVllt..esekedsesektvaelllqnvrVLavgqeeakkreeedeekkkeaetastvtLevtpeq 98 
                 +gv   ++pG+ V+V l     +++ +++ + ++++  + ++ La g+  a+ +++ ++ ++++a+ta+t+t+e++  q
  EHT99805.1 412 SGVTSNVEPGQTVTVTLGgqTYTATVGQDGSWSVTVPAAALQALAAGT--ATIEATVSNAAGTAATTAETITVEAPATQ 488
                 799999***********97655666666666777777899999***99..77788888888888889999****99876 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.034        46       3      21 ..     211     228 ..     210     231 .. 0.74
   2 ?    4.9   0.2     0.018        25       3      18 ..     316     331 ..     316     332 .. 0.91
   3 ?    4.9   0.2     0.018        25       3      18 ..     421     436 ..     421     437 .. 0.91
   4 ?   -1.9   0.1       2.4   3.3e+03       3      15 ..     730     741 ..     730     742 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.034
                 TSEEEEEETSCEEEEEEEE CS
       BPL_C   3 GqeVtlededgkveGiavG 21 
                 Gq+Vt+++ +g+++ +avG
  EHT99805.1 211 GQTVTVTL-GGQTYTTAVG 228
                 9*******.5555555555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.018
                 TSEEEEEETSCEEEEE CS
       BPL_C   3 GqeVtlededgkveGi 18 
                 Gq+Vt+++++++++++
  EHT99805.1 316 GQTVTVTLGGQTYTAT 331
                 9********9999987 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.018
                 TSEEEEEETSCEEEEE CS
       BPL_C   3 GqeVtlededgkveGi 18 
                 Gq+Vt+++++++++++
  EHT99805.1 421 GQTVTVTLGGQTYTAT 436
                 9********9999987 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.4
                 TSEEEEEETSCEE CS
       BPL_C   3 GqeVtlededgkv 15 
                 Gq+V + + +g++
  EHT99805.1 730 GQQVQIQL-GGNT 741
                 9*******.6665 PP

>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.029        40     109     150 ..       9      50 ..       4      81 .. 0.83
   2 ?   -3.1   0.0       2.8   3.8e+03     140     159 ..     200     219 ..     179     229 .. 0.66
   3 ?   -3.7   0.0       4.1   5.6e+03     152     166 ..     309     323 ..     300     342 .. 0.55
   4 ?   -4.2   0.0       5.8   7.9e+03     143     165 ..     413     427 ..     406     442 .. 0.55
   5 ?    4.8   0.0     0.011        15     146     181 ..     513     548 ..     501     553 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.029
  Lyx_isomer 109 eDiinRgGgklvielynsdedeklededvtvsvDGvkktvaa 150
                  Dii R+ g+l+ ++   ++++ + +e+  v+++G+++ v+ 
  EHT99805.1   9 VDIISRANGTLISQVDGVSAQTITLSEPSVVRINGTREVVTQ 50 
                 59***************999999999999******9988765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.8
  Lyx_isomer 140 svDGvkktvaageklrlkpG 159
                 ++ G++++v+ag++++++ G
  EHT99805.1 200 TLSGTTTNVEAGQTVTVTLG 219
                 45566666666666666544 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.1
  Lyx_isomer 152 eklrlkpGesitlep 166
                  + +++pG+++t++ 
  EHT99805.1 309 VTSNVEPGQTVTVTL 323
                 344455666554432 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 5.8
  Lyx_isomer 143 GvkktvaageklrlkpGesitle 165
                 Gv++        +++pG+++t++
  EHT99805.1 413 GVTS--------NVEPGQTVTVT 427
                 3444........44555554443 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.011
  Lyx_isomer 146 ktvaageklrlkpGesitlepglyHkfwaekgkgkv 181
                  ++ +g++++++pG+++tl  ++y + ++++g+ +v
  EHT99805.1 513 DQILSGTTVNVEPGQTVTLGGQTYTTTVGQDGGWSV 548
                 567799******************999999887666 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.8   7.9e+03      30      60 ..      32      62 ..      25      66 .. 0.72
   2 ?    5.2   0.4     0.011        16      71     143 ..     202     274 ..     197     296 .. 0.76
   3 ?    2.5   0.3     0.077   1.1e+02      72     160 ..     308     396 ..     306     401 .. 0.73
   4 ?    5.6   0.2    0.0084        12      72     142 ..     413     483 ..     411     508 .. 0.76
   5 ?   -1.2   0.0         1   1.4e+03      72     116 ..     518     560 ..     515     577 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.8
  AraC_binding_2 30 rlgdlslgrlrygaavsirpselddfylvql 60
                     l + s++r+  +++v+ ++++ +d + vq+
      EHT99805.1 32 TLSEPSVVRINGTREVVTQFQRQGDDLIVQM 62
                    5555677777778888888888888888877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
  AraC_binding_2  71 ggrevvlgpgdavvldpgrpyrlrwsadceqlvlripralLerplraplrfaprldldsgagalwrrllrslv 143
                      g+++++++g++v ++ g ++  +  ++   +++++p+a L++ + +    a +++ ++g +a   ++++  +
      EHT99805.1 202 SGTTTNVEAGQTVTVTLGGQTYTTAVGTDGSWSVTVPSAALQALAAGTATIAVTVSNAAGTAATTTETITVEA 274
                     58899******998888887777777799999**************999999999988888887776665554 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.077
  AraC_binding_2  72 grevvlgpgdavvldpgrpyrlrwsadceqlvlripralLerplraplrfaprldldsgagalwrrllrslvaelaelgpalassplla 160
                     g + +++pg++v ++ g ++  ++ +    +++++p+  L++ + +    +++++ ++g +a  +++++  +  +   +p+ a +p ++
      EHT99805.1 308 GVTSNVEPGQTVTVTLGGQTYTATVGQDGSWSVTVPAVALQALAAGTATIEATVSNAAGTAATTAETITVEAPATQPGDPTVALAPFAG 396
                     5678899999877777766555555577788*****99999999999999999999999888888877665555555556566556555 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0084
  AraC_binding_2  72 grevvlgpgdavvldpgrpyrlrwsadceqlvlripralLerplraplrfaprldldsgagalwrrllrsl 142
                     g + +++pg++v ++ g ++  ++ +    +++++p+a L++ + +    +++++ ++g +a  +++++  
      EHT99805.1 413 GVTSNVEPGQTVTVTLGGQTYTATVGQDGSWSVTVPAAALQALAAGTATIEATVSNAAGTAATTAETITVE 483
                     5678899***887777776555555577888****************999999999999998888776655 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1
  AraC_binding_2  72 grevvlgpgdavvldpgrpyrlrwsadceqlvlripralLerplr 116
                     g++v+++pg++v l  g++y+ ++++d   +++++p+a L++ + 
      EHT99805.1 518 GTTVNVEPGQTVTL-GGQTYTTTVGQDG-GWSVTVPSAALGALAA 560
                     77888999997765.5666666666443.4577888777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 5557.42
//
Query:       EHT99806.1  [L=2497]
Description: large repetitive protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-69  229.8 255.0    8.1e-07   29.2   5.5   23.6 22  Big_6            Bacterial Ig domain
    1.4e-20   73.8   9.7       0.15   12.3   0.0   14.5 19  DUF4625          Domain of unknown function (DUF4625)
    1.1e-17   64.1  99.7    0.00038   20.1   1.7   18.7 19  Big_3_3          Bacterial Ig-like domain (group 3)
    4.5e-11   42.4  10.7        1.7    8.4   0.0   10.3 11  Big_3_4          Domain of unknown function
    2.9e-08   33.1  26.9    6.1e-08   32.0  26.9    1.5  1  MFS_1            Major Facilitator Superfamily
    1.7e-06   28.3  74.2      0.032   14.5   2.6   16.8 20  Big_3_2          Bacterial Ig-like domain
    5.9e-06   26.0   1.8        0.5    9.9   0.0    6.7  8  DUF4998          Domain of unknown function
    0.00042   20.6  63.2        3.2    8.1   0.0   17.7 19  HYR              HYR domain
    0.00063   19.6   1.9        1.7    8.6   0.0    6.6  8  Y_Y_Y            Y_Y_Y domain
     0.0014   18.6  19.0         32    4.7   0.0   13.6 17  DUF1905          Domain of unknown function (DUF1905)
  ------ inclusion threshold ------
       0.34   11.3  10.1        5.7    7.3   0.0    7.1  9  bMG5             Bacterial Alpha-2-macroglobulin MG5 domain
          2    7.8   5.2         27    4.2   0.0    4.9  6  GatD_N           GatD N-terminal domain


Domain annotation for each model (and alignments):
>> Big_6  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0082        12      16      74 ..      17      78 ..       5      87 .. 0.80
   2 !   20.8   4.1   2.2e-07   0.00034      15      77 ..     118     186 ..     112     193 .. 0.81
   3 !   15.1   3.1   1.4e-05      0.02      16      77 ..     219     286 ..     209     293 .. 0.69
   4 !   11.5   6.9   0.00019      0.28      18      80 ..     326     392 ..     312     394 .. 0.69
   5 !   29.2   5.5   5.4e-10   8.1e-07      15      78 ..     420     486 ..     411     492 .. 0.84
   6 !   10.1   3.6   0.00049      0.73      16      74 ..     521     585 ..     510     593 .. 0.79
   7 !   15.3   3.1   1.2e-05     0.017      17      80 ..     622     692 ..     612     694 .. 0.75
   8 !   20.3   7.3   3.2e-07   0.00049      18      80 ..     727     793 ..     714     795 .. 0.77
   9 !   12.6   1.4   8.4e-05      0.13      17      77 ..     823     888 ..     811     895 .. 0.74
  10 !   17.3   7.0   2.8e-06    0.0043      17      81 ..     925     993 ..     912     994 .. 0.71
  11 !   15.8   0.6   8.2e-06     0.012      17      75 ..    1022    1086 ..    1010    1093 .. 0.77
  12 !   12.1   4.3   0.00012      0.18      22      81 ..    1133    1196 ..    1116    1198 .. 0.75
  13 !   11.9   1.7   0.00013       0.2      23      77 ..    1222    1295 ..    1207    1301 .. 0.69
  14 !   25.6   3.7   7.2e-09   1.1e-05      13      80 ..    1325    1395 ..    1317    1397 .. 0.85
  15 !   13.6   3.2     4e-05     0.059      14      76 ..    1425    1493 ..    1418    1497 .. 0.80
  16 !   17.9   3.2   1.8e-06    0.0027      23      78 ..    1538    1596 ..    1518    1601 .. 0.82
  17 !    9.7   2.5   0.00069         1      15      77 ..    1629    1696 ..    1621    1702 .. 0.72
  18 !   20.4   5.1     3e-07   0.00045      14      77 ..    1728    1801 ..    1720    1807 .. 0.73
  19 !   15.2   2.4   1.3e-05      0.02      18      76 ..    1841    1904 ..    1827    1911 .. 0.73
  20 !   20.1   5.2   3.8e-07   0.00056      12      79 ..    1934    2007 ..    1929    2011 .. 0.75
  21 !   28.0   0.4   1.3e-09     2e-06      17      73 ..    2043    2102 ..    2035    2112 .. 0.88
  22 !   12.8   7.2   7.2e-05      0.11      16      81 ..    2241    2313 ..    2227    2315 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0082
       Big_6 16 tltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntS 74
                 l+G+++ g +Vt++  +g+   +  ++++G++s+ ++++         + ++v++t+a+g + 
  EHT99806.1 17 ILNGTGQNGDQVTLS-LNGRFY-RTLVASNGRWSLRVDQSDlaalpSGSNPFTVTVTNANGSQT 78
                489**********99.477775.55888*********9887666656778999**999999765 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.2e-07
       Big_6  15 ttltGka...eagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaa 77 
                 +tltG++   eag +V v+  +  v+ tgt++ +G++++tl++       + ++tl+v +++a gntS a 
  EHT99806.1 118 QTLTGTTtnvEAGQQVSVTL-N-GVTYTGTVEPNGNWQITLPSTAlsglpNGAQTLTVEVVNAVGNTSSAE 186
                 678898766699*******6.4.4669**************776657777888**************9874 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.4e-05
       Big_6  16 tltGka...eagatVtvkdadgtvlgtgtadadGeFsvtlepaq...angetlsv..vatDaagntSdaa 77 
                 +l+G++    ag++Vtv+  +gt   tgt+da+G+++vtl++       + +l v  + tDa gnt ++ 
  EHT99806.1 219 VLSGTTiniPAGSQVTVS-VNGTS-YTGTVDAQGNWTVTLPAGSlaeLPNGALPVitTITDAGGNTLATN 286
                 56666633348******9.68887.8**************765433444444444226789999984443 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00019
       Big_6  18 tGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSda.atvt 80 
                 +G + ag  V+v   +g    +gt+d +G+++v++++       +     +v++tD agntS+a  +vt
  EHT99806.1 326 SGVTGAGQGVVVNF-NGVD-YNGTVDGAGNWQVSIPSGIlaaldQGTVPYTVTLTDIAGNTSTAsGSVT 392
                 45566777787764.5555.89************96533333324445689***********9934444 PP

  == domain 5  score: 29.2 bits;  conditional E-value: 5.4e-10
       Big_6  15 ttltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaat 78 
                  +ltG+ e gat+ v   +gt++ t ta+ dG+++++++ a          tl+v+atD+agn+S++++
  EHT99806.1 420 LVLTGTSENGATI-VASFNGTTV-TTTANTDGTWTLNVPDAAlsglsDGSYTLTVTATDSAGNVSTNTS 486
                 579**********.777899985.569***********98885666455579*************9975 PP

  == domain 6  score: 10.1 bits;  conditional E-value: 0.00049
       Big_6  16 tltGka...eagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntS 74 
                 +l+G++   e g tVt++   g+ + +gt+  dG++++t++++          + +v ++Daagnt 
  EHT99806.1 521 VLSGTTtnvEQGQTVTLT--VGSDVFSGTVLGDGTWQLTVPAEVlaslaDGSASYTVAVSDAAGNTA 585
                 567765444889999999..588889**************8766666634445789999******96 PP

  == domain 7  score: 15.3 bits;  conditional E-value: 1.2e-05
       Big_6  17 ltGkae...agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaatvt 80 
                 ++G++    + +tVt+    + v+ tgt++a+G++++ ++pa         +tl+v+atD++g + S   t++
  EHT99806.1 622 VSGTTVnvaPDSTVTLVF--NGVTYTGTVSATGTWNIVIPPADlasltDGPTTLTVSATDTTGAVlSSSGTLN 692
                 566654222677888875..34669****************997777445599**********9866666665 PP

  == domain 8  score: 20.3 bits;  conditional E-value: 3.2e-07
       Big_6  18 tGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaatvt 80 
                 tG   +g tV+v+  +g++  +gt+da+G+++vtl++       +  +  +v++tDaagn  S a tv 
  EHT99806.1 727 TGVSGVGQTVNVTF-NGNI-YSGTVDANGNWRVTLPADAltaltEGSTGYTVTVTDAAGNSrSVAGTVE 793
                 78888999*****6.6665.9**************7655555544556699*********867777765 PP

  == domain 9  score: 12.6 bits;  conditional E-value: 8.4e-05
       Big_6  17 ltGkaeag..atVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaa 77 
                 l+G+ +ag    Vt++   ++++ t  +da+G++s+tl++       a   +l v+++D agn  +++
  EHT99806.1 823 LSGSSDAGegQAVTIT--LNNQVWTTAVDAEGNWSFTLPAGAlegipAGSYALAVTVSDLAGNSVTET 888
                 7787777611556666..677889999***********87775566566779***********85443 PP

  == domain 10  score: 17.3 bits;  conditional E-value: 2.8e-06
       Big_6  17 ltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaatvta 81 
                  tG   ag tVtv+  +g+   ++t+da+G++s+tl +       +  + + v +tDaagnt S   ++t+
  EHT99806.1 925 TTGASGAGQTVTVT-VGGND-YSATVDAQGNWSLTLGSDVlqaltEGVNPIVVNVTDAAGNTgSLDSNITV 993
                 255667899****9.45665.79*************55443344344578999*********666666665 PP

  == domain 11  score: 15.8 bits;  conditional E-value: 8.2e-06
       Big_6   17 ltGk...aeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSd 75  
                  ++G+   a+ g tVtv+  +g++  +  + +dG+++v+++++        + +l +++tDaagn+ +
  EHT99806.1 1022 VSGTaslADEGQTVTVTL-QGQT-YQTLVLQDGSWQVNIPASVmqglpDGAYALDITLTDAAGNQTT 1086
                  66662225789******7.5555.466899*********88875565556689***********976 PP

  == domain 12  score: 12.1 bits;  conditional E-value: 0.00012
       Big_6   22 eagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaatvta 81  
                   ag  Vtv+  +g+   tg ++adG+++vt+++         + ++ vva+D+agn  S +a++t+
  EHT99806.1 1133 TAGQVVTVTL-NGQS-YTGAVQADGSWNVTVPAGDagalpDGALSVVVVASDTAGNPaSSTASLTV 1196
                  4788999996.5555.7999***********776644443445577889*******7588898887 PP

  == domain 13  score: 11.9 bits;  conditional E-value: 0.00013
       Big_6   23 agatVtvkdadgtvlgtg..............tadadGeFsvtlepaq......angetlsvvatDaagntSdaa 77  
                  ag+ ++v+ +  ++l++g              t+da+G+++vt+++         +++++ v+a Daagn  +a 
  EHT99806.1 1222 AGTALEVTGS-SRLLAEGtpvtltvngiayptTIDANGNWRVTVPADAladlpsGTEQAFVVTANDAAGNPAEAS 1295
                  5555555532.23444444444444445555599**********766556666578999***********88775 PP

  == domain 14  score: 25.6 bits;  conditional E-value: 7.2e-09
       Big_6   13 dgttltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaatvt 80  
                  ++ t+tG+  +ga++ v+   +++  t+ ad +G++++++++a         +t++v+atD++gn+ +  ++t
  EHT99806.1 1325 QDLTVTGNSAPGAQISVTL--NQISYTALADGNGAWTLAIPAADlqaltDGVQTVTVTATDTSGNVATDSSTT 1395
                  6789**************6..67889**************98876666445599************9887765 PP

  == domain 15  score: 13.6 bits;  conditional E-value: 4e-05
       Big_6   14 gttltGkae...agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSda 76  
                    tltG+a     g+++tv+   g +  t t++a+G ++++l+p          ++++v+a+D agn  +a
  EHT99806.1 1425 ALTLTGTATnlaEGSEITVTI--GDQPFTTTVAANGIWTLNLAPDAlsglpDGVTQVQVTASDVAGNPAEA 1493
                  568999997333589999995..6677799999*********9998555545569************8765 PP

  == domain 16  score: 17.9 bits;  conditional E-value: 1.8e-06
       Big_6   23 agatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaat 78  
                   g tV+v+  dgt   t+ +da+G+++ +l+p+          tls+v tD agntS ++t
  EHT99806.1 1538 DGQTVNVT-VDGTP-LTVSVDAQGNWTASLTPEVmaglaDGSHTLSIVTTDRAGNTSVTTT 1596
                  58899999.79998.6899************9995555444589*************9986 PP

  == domain 17  score: 9.7 bits;  conditional E-value: 0.00069
       Big_6   15 ttltGk..aeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaa 77  
                   +l+G+   +  a Vtv+  +gt+   + ++ dG++s++l+++           +++++tD +gnt  ++
  EHT99806.1 1629 GSLSGDlnNDNAAAVTVT-VNGTL-YAAAINGDGTWSLDLPASVlqtlpDGTWPVTITVTDVNGNTASTV 1696
                  556664214567899999.68887.677889*********877655653445589**********96654 PP

  == domain 18  score: 20.4 bits;  conditional E-value: 3e-07
       Big_6   14 gttltGka...eagatVtv..kdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaa 77  
                  ++tltG++    ag tVtv  +  ++ +  ++++++dG++s+tl+p q     +    ++v+a+D+agnt +++
  EHT99806.1 1728 DQTLTGTTgisGAGQTVTVviSGFNNDEPLNAVVQNDGSWSLTLTPDQmaqipNGSHVITVSAADSAGNTDNTT 1801
                  4444444311145556655337889999******************9977776667889**********96654 PP

  == domain 19  score: 15.2 bits;  conditional E-value: 1.3e-05
       Big_6   18 tGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSda 76  
                  tG+  a+  V +  + + +   gt+d+dG++svt++p+          t++v ++Da+gn ++a
  EHT99806.1 1841 TGSSGANQAVSIIVNLDGISYPGTVDNDGNWSVTIPPNAlnslgSGPYTVTVNVVDATGNPGTA 1904
                  5566677789886666666699*************9999554444457999*********8776 PP

  == domain 20  score: 20.1 bits;  conditional E-value: 3.8e-07
       Big_6   12 edgttltG.kaeag..atVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagntSdaatv 79  
                  ++g tltG ++e+g   tV+v+   g +  +++++adG+++++l++a        + +lsvvatDaagn  + +++
  EHT99806.1 1934 ANGVTLTGsTGEPGegQTVVVT--LGGTSFDAVVQADGSWTLALSTADlqgytDGNYSLSVVATDAAGNSATLTET 2007
                  5788999944787622677777..4555689**************9995555334458***********9877665 PP

  == domain 21  score: 28.0 bits;  conditional E-value: 1.3e-09
       Big_6   17 ltGkaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt 73  
                  +tG ae g+++tv+ ad tvlgtg+++adG++s+tl+p+q     +  +tl+++++D+agn 
  EHT99806.1 2043 VTG-AEIGTSLTVSLAD-TVLGTGIVGADGSWSLTLTPEQmrdftQPTTTLTLTVSDQAGNP 2102
                  666.8*********765.999*******************99998899*************5 PP

  == domain 22  score: 12.8 bits;  conditional E-value: 7.2e-05
       Big_6   16 tltG...kaeagatVtvkdadgtvlgtgtadadGeFsvtlepaq.....angetlsvvatDaagnt.Sdaatvta 81  
                  t++G   + eag  Vtv+  +g++  t++++ dG++s +++++      + ++ +++ ++Daagn+ S   tvt+
  EHT99806.1 2241 TISGtsdTSEAGRAVTVTL-NGKT-YTAVVQTDGTWSTSVPASDmqalaEGQTVINAQLSDAAGNVtSVDRTVTV 2313
                  4666222579********6.5555.79**********999766555664556779**********8677788876 PP

>> DUF4625  Domain of unknown function (DUF4625)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.7   8.5e+03     106     128 ..      61      83 ..      57      86 .. 0.79
   2 ?   -3.1   0.0       5.9   8.8e+03      91     128 ..     147     188 ..     132     191 .. 0.78
   3 ?   -3.3   0.0       6.6   9.9e+03     104     126 ..     264     286 ..     249     292 .. 0.77
   4 ?   -0.9   0.0       1.2   1.8e+03     103     130 ..     365     392 ..     345     393 .. 0.77
   5 !    8.4   0.0    0.0016       2.4      89     130 ..     444     489 ..     424     491 .. 0.77
   6 ?   -1.0   0.0       1.3   1.9e+03     100     130 ..     558     592 ..     551     594 .. 0.74
   7 ?   -2.4   0.0       3.6   5.4e+03      93     128 ..     651     690 ..     640     694 .. 0.72
   8 !    6.4   0.0    0.0069        10      79     130 ..     740     793 ..     705     795 .. 0.75
   9 !   10.4   0.0   0.00039      0.58      91     131 ..     849     893 ..     826     894 .. 0.82
  10 ?    2.0   0.0      0.15   2.2e+02     104     131 ..     966     993 ..     943     994 .. 0.84
  11 !   12.3   0.0    0.0001      0.15      94     128 ..    1052    1090 ..    1032    1092 .. 0.81
  12 ?   -0.2   0.0      0.75   1.1e+03      98     131 ..    1262    1300 ..    1250    1301 .. 0.71
  13 ?   -2.0   0.0       2.6   3.9e+03     104     124 ..    1370    1390 ..    1355    1397 .. 0.74
  14 ?   -1.5   0.0       1.9   2.8e+03     104     126 ..    1573    1595 ..    1562    1597 .. 0.83
  15 ?    5.6   0.0     0.012        17     100     131 ..    1666    1701 ..    1636    1702 .. 0.79
  16 ?   -0.8   0.0       1.1   1.7e+03     102     129 ..    1777    1804 ..    1766    1806 .. 0.87
  17 !    6.1   0.0    0.0082        12      91     124 ..    1866    1903 ..    1843    1909 .. 0.81
  18 !    6.7   0.0    0.0052       7.8     105     131 ..    1984    2010 ..    1979    2011 .. 0.86
  19 ?   -2.5   0.0       3.9   5.8e+03      93     130 ..    2271    2312 ..    2247    2313 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.7
     DUF4625 106 aGdYhlvirvtDasGneteesre 128
                  G   ++++vt a+G +t    +
  EHT99806.1  61 SGSNPFTVTVTNANGSQTTFTSD 83 
                 677789**********9987655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.9
     DUF4625  91 eyelheeieiPad....aeaGdYhlvirvtDasGneteesre 128
                 e + + +i+ P++     ++G   l++ v+ a Gn++  + +
  EHT99806.1 147 EPNGNWQITLPSTalsgLPNGAQTLTVEVVNAVGNTSSAELA 188
                 566778888898855556788999999999999999887766 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.6
     DUF4625 104 aeaGdYhlvirvtDasGnetees 126
                  ++G   ++ ++tDa Gn+  ++
  EHT99806.1 264 LPNGALPVITTITDAGGNTLATN 286
                 567777788999******97764 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.2
     DUF4625 103 daeaGdYhlvirvtDasGneteesreik 130
                   ++G    ++++tD +Gn++  s +++
  EHT99806.1 365 ALDQGTVPYTVTLTDIAGNTSTASGSVT 392
                 3678888899**********99988775 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0016
     DUF4625  89 kkeyelheeieiPad....aeaGdYhlvirvtDasGneteesreik 130
                 + +++ + ++++P+       +G Y l++++tD +Gn +    +++
  EHT99806.1 444 TANTDGTWTLNVPDAalsgLSDGSYTLTVTATDSAGNVSTNTSNLT 489
                 45777888888888855556899**************998877766 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1.3
     DUF4625 100 iPad....aeaGdYhlvirvtDasGneteesreik 130
                 +Pa+     ++G    ++ v Da+Gn+   s +++
  EHT99806.1 558 VPAEvlasLADGSASYTVAVSDAAGNTATGSLDLT 592
                 45443333678888999*********999887765 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 3.6
     DUF4625  93 elheeieiP.ad...aeaGdYhlvirvtDasGneteesre 128
                 + + +i+iP ad    ++G   l++++tD +G     s +
  EHT99806.1 651 TGTWNIVIPpADlasLTDGPTTLTVSATDTTGAVLSSSGT 690
                 556667776333555899999***********87666655 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.0069
     DUF4625  79 feksydlsgskkeyelheeieiPad....aeaGdYhlvirvtDasGneteesreik 130
                 f+   +++ ++ +++ +  ++ Pad     ++G    +++vtDa+Gn++ ++ +++
  EHT99806.1 740 FNG--NIYSGTVDANGNWRVTLPADaltaLTEGSTGYTVTVTDAAGNSRSVAGTVE 793
                 443..446666788899999999996666699****************99988776 PP

  == domain 9  score: 10.4 bits;  conditional E-value: 0.00039
     DUF4625  91 eyelheeieiPad....aeaGdYhlvirvtDasGneteesreiki 131
                 ++e + +++ Pa     ++aG Y l+++v D +Gn+  e rei++
  EHT99806.1 849 DAEGNWSFTLPAGalegIPAGSYALAVTVSDLAGNSVTETREITV 893
                 5667777888877666689***********************987 PP

  == domain 10  score: 2.0 bits;  conditional E-value: 0.15
     DUF4625 104 aeaGdYhlvirvtDasGneteesreiki 131
                  ++G   +v+ vtDa+Gn+   + +i++
  EHT99806.1 966 LTEGVNPIVVNVTDAAGNTGSLDSNITV 993
                 567788899**********999999976 PP

  == domain 11  score: 12.3 bits;  conditional E-value: 0.0001
     DUF4625   94 lheeieiPad....aeaGdYhlvirvtDasGneteesre 128 
                     +++iPa+     ++G Y l i++tDa+Gn+t    +
  EHT99806.1 1052 GSWQVNIPASvmqgLPDGAYALDITLTDAAGNQTTLTQN 1090
                  556788888855557889****************98766 PP

  == domain 12  score: -0.2 bits;  conditional E-value: 0.75
     DUF4625   98 ieiPad....aeaG.dYhlvirvtDasGneteesreiki 131 
                  +++Pad     + G +  +v+++ Da+Gn  e s ++ i
  EHT99806.1 1262 VTVPADaladLPSGtEQAFVVTANDAAGNPAEASHNVAI 1300
                  55555533334556345699**********999999877 PP

  == domain 13  score: -2.0 bits;  conditional E-value: 2.6
     DUF4625  104 aeaGdYhlvirvtDasGnete 124 
                   ++G   +++++tD sGn   
  EHT99806.1 1370 LTDGVQTVTVTATDTSGNVAT 1390
                  678888899********9765 PP

  == domain 14  score: -1.5 bits;  conditional E-value: 1.9
     DUF4625  104 aeaGdYhlvirvtDasGnetees 126 
                   ++G   l i  tD++Gn++ + 
  EHT99806.1 1573 LADGSHTLSIVTTDRAGNTSVTT 1595
                  56899999**********98765 PP

  == domain 15  score: 5.6 bits;  conditional E-value: 0.012
     DUF4625  100 iPad....aeaGdYhlvirvtDasGneteesreiki 131 
                   Pa+     ++G + ++i+vtD +Gn+  +  +i +
  EHT99806.1 1666 LPASvlqtLPDGTWPVTITVTDVNGNTASTVDNIIV 1701
                  55443333899****************999888865 PP

  == domain 16  score: -0.8 bits;  conditional E-value: 1.1
     DUF4625  102 adaeaGdYhlvirvtDasGneteesrei 129 
                  a++++G   +++++ D +Gn+ ++  ++
  EHT99806.1 1777 AQIPNGSHVITVSAADSAGNTDNTTLNV 1804
                  568999999***********99987765 PP

  == domain 17  score: 6.1 bits;  conditional E-value: 0.0082
     DUF4625   91 eyelheeieiPad....aeaGdYhlvirvtDasGnete 124 
                  +++ + +++iP +       G Y +++ v+Da+Gn   
  EHT99806.1 1866 DNDGNWSVTIPPNalnsLGSGPYTVTVNVVDATGNPGT 1903
                  56778899999994444578***************765 PP

  == domain 18  score: 6.7 bits;  conditional E-value: 0.0052
     DUF4625  105 eaGdYhlvirvtDasGneteesreiki 131 
                  ++G+Y l + +tDa+Gn+     +++i
  EHT99806.1 1984 TDGNYSLSVVATDAAGNSATLTETLTI 2010
                  68***************9987766665 PP

  == domain 19  score: -2.5 bits;  conditional E-value: 3.9
     DUF4625   93 elheeieiPad....aeaGdYhlvirvtDasGneteesreik 130 
                  + + + ++Pa+     ++G+  +  ++ Da+Gn t ++r+++
  EHT99806.1 2271 DGTWSTSVPASdmqaLAEGQTVINAQLSDAAGNVTSVDRTVT 2312
                  555555566555555667777778889999999999888765 PP

>> Big_3_3  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.5     0.024        36       8     144 ..      55     189 ..      50     192 .. 0.68
   2 ?    3.1   0.1     0.046        69       9      51 ..     161     202 ..     150     224 .. 0.78
   3 ?   -3.8   0.0       5.8   8.7e+03       8      36 ..     260     288 ..     251     308 .. 0.76
   4 !   18.8   3.2   6.6e-07   0.00099      12     144 ..     366     488 ..     362     492 .. 0.73
   5 !   20.1   1.7   2.6e-07   0.00038       9     141 ..     460     588 ..     459     596 .. 0.81
   6 ?   -0.3   0.1      0.48   7.2e+02      11      46 ..     665     700 ..     660     723 .. 0.58
   7 !    6.8   0.2    0.0032       4.8       9     144 ..     764     891 ..     753     903 .. 0.72
   8 !    9.7   0.5   0.00043      0.64       9      70 ..     963    1019 ..     953    1048 .. 0.79
   9 !    8.4   0.4     0.001       1.6       9      68 ..    1063    1120 ..    1053    1158 .. 0.71
  10 !    9.0   0.0   0.00067      0.99       9      54 ..    1166    1209 ..    1157    1225 .. 0.79
  11 !   12.8   0.9   4.6e-05     0.069       9     142 ..    1269    1393 ..    1258    1404 .. 0.81
  12 !    6.9   2.1    0.0029       4.4       9     144 ..    1469    1599 ..    1467    1607 .. 0.77
  13 ?    5.2   2.3      0.01        15       9     141 ..    1671    1801 ..    1668    1805 .. 0.71
  14 ?    3.9   0.1     0.026        39       9      48 ..    1776    1813 ..    1767    1832 .. 0.74
  15 !   10.3   0.2   0.00028      0.41       9      95 ..    1880    1964 ..    1869    1974 .. 0.75
  16 !   11.7   0.1    0.0001      0.15       8      50 ..    1979    2019 ..    1969    2044 .. 0.84
  17 ?    1.1   0.1      0.18   2.8e+02      17      68 ..    2089    2138 ..    2080    2166 .. 0.76
  18 !    5.7   0.9    0.0072        11      25      88 ..    2197    2261 ..    2185    2275 .. 0.71
  19 ?    3.6   0.1     0.031        47       8      49 ..    2282    2321 ..    2278    2326 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.024
     Big_3_3   8 dlkelpeGkynlvlaakdtfnnqvtksllsti.lvdntpPtvsisegkkisdgavvkglenlr.itladaldks...kltsialsGGpasDkVelswve 101
                 dl +lp+G+   +++ +++++ q+t ++  ++ +  +  Pt+++ + ++ +++ ++ g e+ +  tl+ ++++    +  s++l G +   +V      
  EHT99806.1  55 DLAALPSGSNPFTVTVTNANGSQTTFTSDLNVaTAPEVQPTITV-NSGSFAGDGILDGAEQQQpQTLTGTTTNVeagQQVSVTLNGVTYTGTV------ 146
                 7899*****999997777777777666655541455778*****.555666666677766554245555544432237778888885544444...... PP

     Big_3_3 102 egkdvysleYPrlFPsleegesYtltvkaeDeagNaktkaskF 144
                 e ++ +++  P    s  ++   tltv++  + gN++     F
  EHT99806.1 147 EPNGNWQITLPSTALSGLPNGAQTLTVEVVNAVGNTSSAELAF 189
                 5677888888888888888888888888888888887766665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.046
     Big_3_3   9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsi.s 51 
                 l+ lp+G ++l++   ++++n+   +l   ++vdnt  +v++ +
  EHT99806.1 161 LSGLPNGAQTLTVEVVNAVGNTSSAELA--FTVDNTGSSVALsP 202
                 7789******999888888888777776..999***99999933 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 5.8
     Big_3_3   8 dlkelpeGkynlvlaakdtfnnqvtksll 36 
                 +l elp+G   ++++++d+ +n++ ++++
  EHT99806.1 260 SLAELPNGALPVITTITDAGGNTLATNTT 288
                 57789999999999999999997665554 PP

  == domain 4  score: 18.8 bits;  conditional E-value: 6.6e-07
     Big_3_3  12 lpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlr.itladaldkskltsialsGGpasDkVelswveegkdvysl 109
                 l +G+   +++ +d  +n+ t s +  ++vd+ pP++++   ++ s++ v++  e  +   l+ ++++   t +a   G       ++++ + +++++l
  EHT99806.1 366 LDQGTVPYTVTLTDIAGNTSTASGS--VTVDTVPPVLQV---ATPSGDGVLNATEIQQpLVLTGTSEN-GATIVASFNG-----TTVTTTANTDGTWTL 453
                 5666666666678888888887776..999*********...66666666666543330233333333.3333333333.....458999999****** PP

     Big_3_3 110 eYPrlFPsleegesYtltvkaeDeagNaktkaskF 144
                 + P    s  +  sYtltv+a+D+agN++t++s+ 
  EHT99806.1 454 NVPDAALSGLSDGSYTLTVTATDSAGNVSTNTSNL 488
                 ****999999999*****************99876 PP

  == domain 5  score: 20.1 bits;  conditional E-value: 2.6e-07
     Big_3_3   9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntp.Ptvsisegkkisdgavvkglenlritladaldks..kltsialsGGpasDkVelswveegk 104
                 l+ l++G+y+l+++a+d  +n  t++++ t++ d ++ Pt+++   ++ +++ vv g e  + ++ + +++   + + ++l+ G+  D V  s +  g+
  EHT99806.1 460 LSGLSDGSYTLTVTATDSAGNVSTNTSNLTVKADAASlPTLTL---NPFAGDNVVDGAERQVSQVLSGTTTNveQGQTVTLTVGS--D-V-FSGTVLGD 551
                 6789*****************99999999*****8755*****...899999999999987777777666644667888888886..3.4.566779** PP

     Big_3_3 105 dvysleYP.rlFPsleege.sYtltvkaeDeagNaktka 141
                 ++++l  P  +  sl +g  sY  tv ++D+agN+ t +
  EHT99806.1 552 GTWQLTVPaEVLASLADGSaSY--TVAVSDAAGNTATGS 588
                 ********55899998875255..56778*****99866 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.48
     Big_3_3  11 elpeGkynlvlaakdtfnnqvtksllstilvdntpP 46 
                 +l +G  +l++ a+dt +  +  s + +++++n p 
  EHT99806.1 665 SLTDGPTTLTVSATDTTGAVLSSSGTLNVAINNVPN 700
                 555555555555555555555555555555555554 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0032
     Big_3_3   9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlr.itladaldkskltsialsGGpasDkVelswveegkdv 106
                 l +l eG+   +++ +d+ +n    s+  t+ vd tpP +++    +++++ vv   e+   i l  ++d+ + + ++++    + +V  + v  +++ 
  EHT99806.1 764 LTALTEGSTGYTVTVTDAAGNSR--SVAGTVEVDLTPPGLTL---DPVTGDDVVDPTESTGpIVLSGSSDAGEGQAVTIT---LNNQVWTTAV-DAEGN 853
                 55678888888887888888865..45557999999999999...88888888888888742666777777777777774...5667754443.44555 PP

     Big_3_3 107 ysleYPrlFPsleegesYtltvkaeDeagNaktkaskF 144
                 +s   P       ++ sY l+v+++D agN +t++++ 
  EHT99806.1 854 WSFTLPAGALEGIPAGSYALAVTVSDLAGNSVTETREI 891
                 66666665445557889999999999999999998875 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00043
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlri 70  
                  l++l eG   +v++ +d+ +n+  + ++  i+vd tpP +++   ++++++  ++ +e l+ 
  EHT99806.1  963 LQALTEGVNPIVVNVTDAAGNTGSLDSN--ITVDFTPPELTL---TPVTGDNQINAVEVLQT 1019
                  67899****************9877665..************...88888888888877753 PP

  == domain 9  score: 8.4 bits;  conditional E-value: 0.001
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntp.Ptvsisegkkisdgavvkglenl 68  
                  ++ lp+G y l ++ +d+ +nq+t++ + t + d ++ P++++    ++s++ +++  e  
  EHT99806.1 1063 MQGLPDGAYALDITLTDAAGNQTTLTQNLTRVADSASlPVLTV---DTVSGDNLLNRAEAA 1120
                  5779******************9999988887776544****9...777777777766644 PP

  == domain 10  score: 9.0 bits;  conditional E-value: 0.00067
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllst.ilvdntpPtvsisegk 54  
                  + +lp+G  ++v++a+dt +n++  + + t i+++ + Pt+s+    
  EHT99806.1 1166 AGALPDGALSVVVVASDTAGNPASSTASLTvIASEAAQPTLSV---D 1209
                  5689*****************98877665527889999****9...2 PP

  == domain 11  score: 12.8 bits;  conditional E-value: 4.6e-05
     Big_3_3    9 lkelpeGkynlvl.aakdtfnnqvtksllstilvdntpPt.vsisegkkisdgavvkglenlri.tladaldkskltsialsGGpasDkVelswvee 102 
                  l +lp+G+ ++ + +a+d+ +n+++ s +  +++++t P+ v+i    + s g+ +++ e+l++ t++ ++ +    s++l       +++ +    
  EHT99806.1 1269 LADLPSGTEQAFVvTANDAAGNPAEASHN--VAIETTLPSlVDI----TLSAGTSLNQAESLQDlTVTGNSAPGAQISVTL------NQISYTALAD 1353
                  5689***987766599*******998876..9999**9983577....99************8725666666666668888......5899999*** PP

     Big_3_3  103 gkdvysleYPrl.FPsleegesYtltvkaeDeagNaktkas 142 
                  g++ ++l  P     +l++g   t+tv+a+D+ gN+ t +s
  EHT99806.1 1354 GNGAWTLAIPAAdLQALTDG-VQTVTVTATDTSGNVATDSS 1393
                  **********9834556655.77************999876 PP

  == domain 12  score: 6.9 bits;  conditional E-value: 0.0029
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllstilvd.ntpPtvsisegkkisdgavvkglenlritladaldks...kltsialsGGpasDkVelswve 101 
                  l+ lp+G  +++++a+d  +n+++ s+  +il+   ++Ptv+     +  ++ v++  e   ++l + +++    +   +++ G p      +s   
  EHT99806.1 1469 LSGLPDGVTQVQVTASDVAGNPAEASVGVEILLTpPATPTVAE----TLFGDNVINASEAASVQLINGTTPLsdgQTVNVTVDGTPL----TVSVDA 1557
                  6789******999**************9888763156666665....7888888999999999988887774444566777777775....466677 PP

     Big_3_3  102 egkdvysleYPrlFPsleegesYtltvkaeDeagNaktk.askF 144 
                  +g+ + sl  P +   l +g s tl++ ++D agN++++ +++F
  EHT99806.1 1558 QGNWTASLT-PEVMAGLADG-SHTLSIVTTDRAGNTSVTtTQDF 1599
                  787777775.9999999998.78************976515566 PP

  == domain 13  score: 5.2 bits;  conditional E-value: 0.01
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlritladaldks...kltsialsGGpasDkVelswvee 102 
                  l++lp+G++ ++++ +d ++n++  ++ + i+  +t P vs+  + +  dga+  +    + tl+ ++  s   +   +++sG   ++   l  v +
  EHT99806.1 1671 LQTLPDGTWPVTITVTDVNGNTAS-TVDNIIVAVQTLPNVSL--NLPFGDGALNATEATQDQTLTGTTGISgagQTVTVVISGFNNDEP--LNAVVQ 1762
                  6899******99999998888765.555588888999****9..778888887666666677788777666644556666666555554..555555 PP

     Big_3_3  103 gkdvysleY.PrlFPsleegesYtltvkaeDeagNaktka 141 
                   ++ +sl   P       ++ s  +tv+a+D+agN+ +++
  EHT99806.1 1763 NDGSWSLTLtPDQMAQ-IPNGSHVITVSAADSAGNTDNTT 1801
                  5556666532444444.4567899***********98766 PP

  == domain 14  score: 3.9 bits;  conditional E-value: 0.026
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtv 48  
                  + ++p+G++ +++ a+d  +n+ +++l+  +++ +t+P+ 
  EHT99806.1 1776 MAQIPNGSHVITVSAADSAGNTDNTTLN--VVTAVTAPVP 1813
                  6678888888888888888888887776..5556666654 PP

  == domain 15  score: 10.3 bits;  conditional E-value: 0.00028
     Big_3_3    9 lkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenlr.itladaldks..kltsialsGGpasDkV 95  
                  l++l +G y+++++  d+ +n+ t +++  ++ d t+P+ ++   ++ + +  +++ +  + +tl+ ++ ++    t ++  GG+  D+V
  EHT99806.1 1880 LNSLGSGPYTVTVNVVDATGNPGTAQFN--FTADLTTPVPTV---APLARDGFINSADVANgVTLTGSTGEPgeGQTVVVTLGGTSFDAV 1964
                  8999*******************99887..999999999999...777777777776543325666666666543444445566666665 PP

  == domain 16  score: 11.7 bits;  conditional E-value: 0.0001
     Big_3_3    8 dlkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvsi 50  
                  dl+   +G+y+l+++a+d+ +n +t++ +  +++d+t+P+++ 
  EHT99806.1 1979 DLQGYTDGNYSLSVVATDAAGNSATLTET--LTIDTTAPVITT 2019
                  6777889***************9988765..999******986 PP

  == domain 17  score: 1.1 bits;  conditional E-value: 0.18
     Big_3_3   17 ynlvlaakdtfnnqvtksllstilvdntpPtvsisegkkisdgavvkglenl 68  
                   +l+l+ +d+ +n+vt++l+  + vd tpP   +++ +++s++ ++ ++++ 
  EHT99806.1 2089 TTLTLTVSDQAGNPVTQELS--VPVDLTPPPGPLVTLGTVSGDNIISTVDQA 2138
                  55666778999999999988..889999987777777888888888888765 PP

  == domain 18  score: 5.7 bits;  conditional E-value: 0.0072
     Big_3_3   25 dtfnnqvtksllstilvdntpPtvsisegkkisdgavvk.glenlritladaldks...kltsialsG 88  
                  ++ n+  t++ + t++++ tpP+++i   +  +++ v++ g  ++r t+  ++d+s   +   ++l G
  EHT99806.1 2197 NATNGSETVTATGTVQLELTPPSLTI---NDFAGDNVINdGETQVRQTISGTSDTSeagRAVTVTLNG 2261
                  45566777788889************...566666666615568999998888887434455556655 PP

  == domain 19  score: 3.6 bits;  conditional E-value: 0.031
     Big_3_3    8 dlkelpeGkynlvlaakdtfnnqvtksllstilvdntpPtvs 49  
                  d+++l+eG+  + ++ +d+ +n + +    t++vd+t+P ++
  EHT99806.1 2282 DMQALAEGQTVINAQLSDAAGNVTSVD--RTVTVDTTAPLIQ 2321
                  7999*****999999999999977655..569*******987 PP

>> Big_3_4  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0044       6.6      19      56 ..     447     488 ..     432     531 .. 0.71
   2 ?   -3.7   0.0       6.6   9.8e+03      33      50 ..     868     885 ..     853     902 .. 0.83
   3 !    7.3   0.0    0.0026       3.9      24      59 ..    1054    1094 ..    1047    1117 .. 0.79
   4 !    8.4   0.0    0.0011       1.7      23      64 ..    1156    1202 ..    1145    1231 .. 0.79
   5 ?    0.1   0.1      0.43   6.5e+02      21      50 ..    1258    1292 ..    1247    1298 .. 0.74
   6 ?   -0.2   0.0      0.56   8.3e+02      30      55 ..    1369    1394 ..    1345    1420 .. 0.71
   7 ?    2.6   0.0     0.074   1.1e+02      31      65 ..    1573    1607 ..    1542    1618 .. 0.80
   8 ?    0.8   0.0      0.26   3.9e+02      33      50 ..    1781    1798 ..    1764    1809 .. 0.86
   9 ?   -1.2   0.0       1.1   1.7e+03      21      48 ..    1869    1900 ..    1857    1912 .. 0.77
  10 !    8.2   0.0    0.0013         2      32      62 ..    1984    2014 ..    1968    2037 .. 0.86
  11 ?   -1.2   0.0       1.1   1.6e+03      24      58 ..    2274    2313 ..    2265    2324 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0044
     Big_3_4  19 seGdiWnvpvP.....ldedGeyvvellaedeaGnqayiakll 56 
                 ++G  W + vP      + dG y + + a d aGn +  +  l
  EHT99806.1 447 TDG-TWTLNVPdaalsGLSDGSYTLTVTATDSAGNVSTNTSNL 488
                 444.455555522211368****************98665544 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.6
     Big_3_4  33 dGeyvvellaedeaGnqa 50 
                  G y +++   d aGn  
  EHT99806.1 868 AGSYALAVTVSDLAGNSV 885
                 58999**********975 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0026
     Big_3_4   24 WnvpvPlde.....dGeyvvellaedeaGnqayiakllyvv 59  
                  W+v +P  +     dG y +++   d aGnq+ +++ l  v
  EHT99806.1 1054 WQVNIPASVmqglpDGAYALDITLTDAAGNQTTLTQNLTRV 1094
                  788888643333349*****************999877544 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0011
     Big_3_4   23 iWnvpvPl.....dedGeyvvellaedeaGnqayiakllyvvdieni 64  
                   Wnv+vP      + dG   v ++a d aGn a  +  l v+  e  
  EHT99806.1 1156 SWNVTVPAgdagaLPDGALSVVVVASDTAGNPASSTASLTVIASEAA 1202
                  59*****7322225689999************999999988887765 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.43
     Big_3_4   21 GdiWnvpvPlde.....dG.eyvvellaedeaGnqa 50  
                  G+ W+v+vP d      +G e    + a+d aGn a
  EHT99806.1 1258 GN-WRVTVPADAladlpSGtEQAFVVTANDAAGNPA 1292
                  44.99***9875333333337888899999999966 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 0.56
     Big_3_4   30 ldedGeyvvellaedeaGnqayiakl 55  
                   ++dG   v + a d +Gn a  +  
  EHT99806.1 1369 ALTDGVQTVTVTATDTSGNVATDSST 1394
                  3689***************8865555 PP

  == domain 7  score: 2.6 bits;  conditional E-value: 0.074
     Big_3_4   31 dedGeyvvellaedeaGnqayiakllyvvdienic 65  
                  + dG + + +++ d aGn +  ++  ++  ++ i 
  EHT99806.1 1573 LADGSHTLSIVTTDRAGNTSVTTTQDFTTATAPIA 1607
                  5799****************999999998888776 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.26
     Big_3_4   33 dGeyvvellaedeaGnqa 50  
                  +G +v+ + a d aGn  
  EHT99806.1 1781 NGSHVITVSAADSAGNTD 1798
                  799*************75 PP

  == domain 9  score: -1.2 bits;  conditional E-value: 1.1
     Big_3_4   21 GdiWnvpvP.....ldedGeyvvellaedeaGn 48  
                  G+ W v++P      + +G y v +   d +Gn
  EHT99806.1 1869 GN-WSVTIPpnalnSLGSGPYTVTVNVVDATGN 1900
                  44.88999844322245899*********9999 PP

  == domain 10  score: 8.2 bits;  conditional E-value: 0.0013
     Big_3_4   32 edGeyvvellaedeaGnqayiakllyvvdie 62  
                  +dG+y + ++a d aGn a +++ l +  ++
  EHT99806.1 1984 TDGNYSLSVVATDAAGNSATLTETLTIDTTA 2014
                  79******************99988665554 PP

  == domain 11  score: -1.2 bits;  conditional E-value: 1.1
     Big_3_4   24 WnvpvPl.....dedGeyvvellaedeaGnqayiakllyv 58  
                  W  +vP      + +G+ v++    d aGn + + + + v
  EHT99806.1 2274 WSTSVPAsdmqaLAEGQTVINAQLSDAAGNVTSVDRTVTV 2313
                  56666642122257899*************9988876644 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0  26.9   4.1e-11   6.1e-08      24     166 ..    2349    2490 ..    2319    2495 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 4.1e-11
       MFS_1   24 aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeer 119 
                   ++  +s + +gl ++++++++ ++ + +  +++rfGr +v+++g+l+ a+gl+l+++  +++ + l++ +l G+g +  +p+   ++    +    
  EHT99806.1 2349 LQNPSMSTAHAGLGYAVFSVAMTAGRFTGDKIIQRFGRYPVMVMGALAAASGLALAVL-LPWPeASLLAFLLVGFGLSNTVPMLFNAAGNQHAM-PA 2443
                  33444677779*****************************************444445.78999*************99999999888876665.69 PP

       MFS_1  120 graigllsagfslGailgpllggllasslgWravfyilaivsllafv 166 
                  ++ai+ +++   +G++ gp+l g+++++++ +++f+++a+++l ++v
  EHT99806.1 2444 NLAISAMTTLGYAGILSGPALIGFISQWISLSGAFLLIALLLLAVAV 2490
                  *******************************************9988 PP

>> Big_3_2  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.3     2e+03      66     116 ..     233     287 ..     166     296 .. 0.65
   2 ?    2.2   0.2      0.13     2e+02      95     122 ..     368     394 ..     302     395 .. 0.74
   3 !    9.0   0.2    0.0011       1.6      92     115 ..     463     485 ..     421     493 .. 0.69
   4 ?   -0.3   0.0      0.84   1.2e+03      94     113 ..     567     586 ..     520     589 .. 0.80
   5 ?    2.8   0.2     0.091   1.4e+02      99     118 ..     773     791 ..     703     795 .. 0.73
   6 ?    4.1   0.0     0.036        54      81     117 ..     848     889 ..     826     895 .. 0.68
   7 ?    2.1   0.1      0.15   2.2e+02     102     120 ..     975     992 ..     968     994 .. 0.81
   8 !   11.0   0.0   0.00025      0.38      72     118 ..    1051    1090 ..    1017    1094 .. 0.69
   9 ?    0.6   0.3      0.45   6.7e+02      49     114 ..    1133    1190 ..    1103    1197 .. 0.72
  10 ?   -2.1   0.1       2.9   4.3e+03      90     118 ..    1272    1297 ..    1256    1301 .. 0.70
  11 ?   -2.5   0.1       3.9   5.8e+03      47     113 ..    1373    1390 ..    1338    1400 .. 0.65
  12 ?   -2.4   0.0       3.6   5.3e+03      96     112 ..    1475    1491 ..    1468    1494 .. 0.81
  13 !   10.0   0.2   0.00055      0.82      64     120 ..    1540    1600 ..    1512    1602 .. 0.75
  14 ?   -1.9   0.1       2.5   3.8e+03      73     114 ..    1647    1695 ..    1620    1702 .. 0.63
  15 ?    1.5   0.2      0.23   3.4e+02      90     116 ..    1779    1801 ..    1715    1807 .. 0.71
  16 ?    3.8   0.4     0.043        65      39     114 ..    1838    1904 ..    1813    1911 .. 0.59
  17 !    6.4   0.0    0.0068        10      95     122 ..    1985    2011 ..    1974    2012 .. 0.87
  18 ?   -1.2   0.0       1.5   2.3e+03      99     111 ..    2090    2102 ..    2073    2109 .. 0.85
  19 ?   -3.2   0.1       6.6   9.9e+03       6      41 ..    2130    2163 ..    2128    2173 .. 0.77
  20 !   14.5   2.6   2.1e-05     0.032      13     122 ..    2200    2314 ..    2187    2315 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.3
     Big_3_2  66 vnvsydegqgtvsipvasakksglfPss.l....deeytlefeiyDkAGNkteips 116
                 v+vs + ++ t ++   + +++  +P++ l    ++ + +  +i+D+ GN+ ++++
  EHT99806.1 233 VTVSVNGTSYTGTVDA-QGNWTVTLPAGsLaelpNGALPVITTITDAGGNTLATNT 287
                 3444444433333333.455555566554422223356677788888888877765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
     Big_3_2  95 deeytlefeiyDkAGNkteipsqkvvfD 122
                 ++ +   ++++D AGN+++  s +v++D
  EHT99806.1 368 QGTVPYTVTLTDIAGNTSTA-SGSVTVD 394
                 556666789*********99.8888877 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
     Big_3_2  92 ssldeeytlefeiyDkAGNkteip 115
                  s d+ ytl ++++D+AGN+++ +
  EHT99806.1 463 LS-DGSYTLTVTATDSAGNVSTNT 485
                 35.99**************98764 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.84
     Big_3_2  94 ldeeytlefeiyDkAGNkte 113
                 +d+     + ++D+AGN+ +
  EHT99806.1 567 ADGSASYTVAVSDAAGNTAT 586
                 56666778899******975 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.091
     Big_3_2  99 tlefeiyDkAGNkteipsqk 118
                    ++++D+AGN++++ + +
  EHT99806.1 773 GYTVTVTDAAGNSRSV-AGT 791
                 46789********999.555 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.036
     Big_3_2  81 v.asakksglfPss.ld....eeytlefeiyDkAGNkteipsq 117
                 v a+ ++s  +P++ l+    + y l ++++D AGN+ +  ++
  EHT99806.1 848 VdAEGNWSFTLPAGaLEgipaGSYALAVTVSDLAGNSVTE-TR 889
                 34567777777777665222258*************8665.44 PP

  == domain 7  score: 2.1 bits;  conditional E-value: 0.15
     Big_3_2 102 feiyDkAGNkteipsqkvv 120
                 ++++D+AGN+ ++ + +++
  EHT99806.1 975 VNVTDAAGNTGSL-DSNIT 992
                 689********99.55555 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.00025
     Big_3_2   72 egqgtvsipvasakksglfPssldeeytlefeiyDkAGNkteipsqk 118 
                  +g+ +v ip    +  + +P++    y l ++++D+AGN+t++ +q+
  EHT99806.1 1051 DGSWQVNIPA---SVMQGLPDG---AYALDITLTDAAGNQTTL-TQN 1090
                  4444444444...333334554...9****************9.665 PP

  == domain 9  score: 0.6 bits;  conditional E-value: 0.45
     Big_3_2   49 dsaklrvidsdgsvyssvnvsydegqgtvsipvasakksglfPssldeeytlefeiyDkAGNktei 114 
                  +  ++ ++  +g+  s + +  ++g+  v++p     ++g +P++    + + + ++D+AGN  + 
  EHT99806.1 1133 TAGQVVTVTLNGQ--SYTGAVQADGSWNVTVPA---GDAGALPDG---ALSVVVVASDTAGNPASS 1190
                  5555666666665..334444455677788887...777778988...88899999******8776 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 2.9
     Big_3_2   90 fPssldeeytlefeiyDkAGNkteipsqk 118 
                  +Ps+  +e  + +++ D+AGN  e  s +
  EHT99806.1 1272 LPSG--TEQAFVVTANDAAGNPAEA-SHN 1297
                  5666..4556677889*****9887.555 PP

  == domain 11  score: -2.5 bits;  conditional E-value: 3.9
     Big_3_2   47 GidsaklrvidsdgsvyssvnvsydegqgtvsipvasakksglfPssldeeytlefeiyDkAGNkte 113 
                  G++                                                 t+ ++++D+ GN+ +
  EHT99806.1 1373 GVQ-------------------------------------------------TVTVTATDTSGNVAT 1390
                  444.................................................455555555555543 PP

  == domain 12  score: -2.4 bits;  conditional E-value: 3.6
     Big_3_2   96 eeytlefeiyDkAGNkt 112 
                  +  +++++++D AGN  
  EHT99806.1 1475 GVTQVQVTASDVAGNPA 1491
                  5678999********76 PP

  == domain 13  score: 10.0 bits;  conditional E-value: 0.00055
     Big_3_2   64 ssvnvsydegqgtvsipvasakksglfPs...s.ldeeytlefeiyDkAGNkteipsqkvv 120 
                  ++vnv  d +  tvs+  + +  ++l P+   + +d+  tl +  +D AGN++++++q ++
  EHT99806.1 1540 QTVNVTVDGTPLTVSVDAQGNWTASLTPEvmaGlADGSHTLSIVTTDRAGNTSVTTTQDFT 1600
                  467888888888888877666666677753335689**********************987 PP

  == domain 14  score: -1.9 bits;  conditional E-value: 2.5
     Big_3_2   73 gqgtvsipv..asakksglfPss.l....deeytlefeiyDkAGNktei 114 
                  ++gt+++    ++ ++s  +P+s l    d+ + + ++++D  GN+ ++
  EHT99806.1 1647 VNGTLYAAAinGDGTWSLDLPASvLqtlpDGTWPVTITVTDVNGNTAST 1695
                  4555555445556666666666655333345788999999999999887 PP

  == domain 15  score: 1.5 bits;  conditional E-value: 0.23
     Big_3_2   90 fPssldeeytlefeiyDkAGNkteips 116 
                  +P++      + +++ D+AGN+ ++ +
  EHT99806.1 1779 IPNG---SHVITVSAADSAGNTDNT-T 1801
                  5555...67788999*******998.4 PP

  == domain 16  score: 3.8 bits;  conditional E-value: 0.043
     Big_3_2   39 sGitddasGidsaklrvidsdgsvyssvnvsydegqgtvsipvasakksglfPssldeeytlefeiyDkAGNktei 114 
                  +G    +sG ++a   +++ dg +++  +v+ ++g+ +v+ip +  ++ g       ++yt+ ++++D+ GN  + 
  EHT99806.1 1838 TGT-TGSSGANQAVSIIVNLDG-ISYPGTVD-NDGNWSVTIPPNALNSLG------SGPYTVTVNVVDATGNPGTA 1904
                  444.445555555555555555.23333333.445555555553333333......589*************8776 PP

  == domain 17  score: 6.4 bits;  conditional E-value: 0.0068
     Big_3_2   95 deeytlefeiyDkAGNkteipsqkvvfD 122 
                  d++y l + ++D+AGN+ ++ + + ++D
  EHT99806.1 1985 DGNYSLSVVATDAAGNSATL-TETLTID 2011
                  899***************99.7777666 PP

  == domain 18  score: -1.2 bits;  conditional E-value: 1.5
     Big_3_2   99 tlefeiyDkAGNk 111 
                  tl ++++D+AGN 
  EHT99806.1 2090 TLTLTVSDQAGNP 2102
                  78999*******5 PP

  == domain 19  score: -3.2 bits;  conditional E-value: 6.6
     Big_3_2    6 sisattssgynmvtsgavwelglgaaskaalrlsGi 41  
                  +i+ t +++ ++v+sg+  +lg  a  + +++++G 
  EHT99806.1 2130 NIISTVDQANGVVLSGTSQNLG--ATGEVSIVINGT 2163
                  7888889999999999977776..777788887775 PP

  == domain 20  score: 14.5 bits;  conditional E-value: 2.1e-05
     Big_3_2   13 sgynmvtsgavw..elglgaaskaalrlsGitddasGidsaklrvidsdgsvyssvnvsydegqgtvsipvasakksglfPss.ld....eeytlef 102 
                  +g ++vt  + +  el       + +  +++ +d+    + ++  +++ ++  + v+v ++ ++ t+ ++  + ++s+ +P+s ++    ++  ++ 
  EHT99806.1 2200 NGSETVTATGTVqlELTPPSLTINDFAGDNVINDGETQVRQTISGTSDTSEAGRAVTVTLNGKTYTAVVQT-DGTWSTSVPASdMQalaeGQTVINA 2295
                  55555555555523333334444555555554443333333334444444468999************999.9999999***987522226788999 PP

     Big_3_2  103 eiyDkAGNkteipsqkvvfD 122 
                  +++D+AGN+t++ +++v++D
  EHT99806.1 2296 QLSDAAGNVTSV-DRTVTVD 2314
                  ************.9999998 PP

>> DUF4998  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.2   6.2e+03      75     101 ..     158     184 ..     150     188 .. 0.89
   2 ?    4.9   0.0     0.011        17      70     104 ..     452     486 ..     422     491 .. 0.75
   3 ?   -1.7   0.0       1.2   1.8e+03      77     105 ..     763     792 ..     733     795 .. 0.76
   4 ?   -3.2   0.0       3.4   5.1e+03      76     106 ..     961     992 ..     931     994 .. 0.74
   5 ?    1.5   0.0      0.13     2e+02      68     102 ..    1052    1087 ..    1009    1094 .. 0.77
   6 !    9.9   0.0   0.00033       0.5      71     104 ..    1563    1596 ..    1530    1601 .. 0.74
   7 ?   -1.8   0.0       1.3   1.9e+03      82     104 ..    1984    2006 ..    1965    2009 .. 0.85
   8 ?   -0.0   0.1      0.38   5.6e+02      50     107 ..    2255    2313 ..    2231    2315 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.2
     DUF4998  75 eviidnLeEgsytFsivtydkkgnsSl 101
                 ++++  L++g  t+ +  +++ gn+S 
  EHT99806.1 158 STALSGLPNGAQTLTVEVVNAVGNTSS 184
                 578899******************996 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
     DUF4998  70 gvdtveviidnLeEgsytFsivtydkkgnsSlkse 104
                 + ++ + ++  L +gsyt+ ++ +d+ gn S +++
  EHT99806.1 452 TLNVPDAALSGLSDGSYTLTVTATDSAGNVSTNTS 486
                 55666788999********************8875 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
     DUF4998  77 iidnLeEgsytFsivtydkkgns.Slksev 105
                 ++  L+Egs+ + ++ +d+ gns S++ +v
  EHT99806.1 763 ALTALTEGSTGYTVTVTDAAGNSrSVAGTV 792
                 57789***************9753777665 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 3.4
     DUF4998  76 viidnLeEgsytFsivtydkkgns.Slksevt 106
                  +++ L+Eg   + +  +d+ gn+ Sl s++t
  EHT99806.1 961 DVLQALTEGVNPIVVNVTDAAGNTgSLDSNIT 992
                 46788999999999999999998657777776 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.13
     DUF4998   68 ke.gvdtveviidnLeEgsytFsivtydkkgnsSlk 102 
                  ++ +v++   +++ L++g y ++i+ +d+ gn+   
  EHT99806.1 1052 GSwQVNIPASVMQGLPDGAYALDITLTDAAGNQTTL 1087
                  44455666667889*****************98655 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00033
     DUF4998   71 vdtveviidnLeEgsytFsivtydkkgnsSlkse 104 
                     +  ++  L++gs+t+sivt+d  gn+S+ ++
  EHT99806.1 1563 ASLTPEVMAGLADGSHTLSIVTTDRAGNTSVTTT 1596
                  4444445567*********************987 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 1.3
     DUF4998   82 eEgsytFsivtydkkgnsSlkse 104 
                  ++g y +s+v +d+ gns   +e
  EHT99806.1 1984 TDGNYSLSVVATDAAGNSATLTE 2006
                  789**************976655 PP

  == domain 8  score: -0.0 bits;  conditional E-value: 0.38
     DUF4998   50 akifwnnkkdsvevpverkegvdtveviidnLeEgsytFsivtydkkgn.sSlksevtg 107 
                  ++++ n k+ + +v+ + +  + +    ++ L+Eg++ ++    d+ gn +S+  +vt+
  EHT99806.1 2255 VTVTLNGKTYTAVVQTDGTWSTSVPASDMQALAEGQTVINAQLSDAAGNvTSVDRTVTV 2313
                  44555555444444444444556666678899***************975799988886 PP

>> HYR  HYR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         5   7.5e+03      46      73 ..     254     283 ..     228     292 .. 0.63
   2 ?   -1.5   0.1       2.2   3.3e+03      59      81 .]     371     393 ..     334     403 .. 0.73
   3 ?    1.5   0.6      0.26   3.8e+02      24      76 ..     431     485 ..     420     491 .. 0.66
   4 ?    2.3   0.0      0.15   2.2e+02      56      80 ..     568     592 ..     556     593 .. 0.85
   5 ?    3.1   0.3      0.08   1.2e+02      52      79 ..     765     792 ..     730     796 .. 0.66
   6 ?    0.8   0.1      0.42   6.3e+02      52      80 ..     964     992 ..     946     993 .. 0.83
   7 ?   -3.6   0.0       9.6   1.4e+04      60      73 ..    1072    1085 ..    1064    1118 .. 0.77
   8 ?    2.6   0.0      0.12   1.8e+02      53      80 ..    1168    1195 ..    1148    1196 .. 0.80
   9 ?    2.9   0.1      0.09   1.3e+02      32      81 .]    1251    1300 ..    1242    1300 .. 0.81
  10 ?   -1.0   0.0       1.5   2.3e+03      43      65 ..    1328    1350 ..    1317    1358 .. 0.81
  11 ?    5.0   0.1      0.02        30      54      74 ..    1370    1390 ..    1364    1400 .. 0.79
  12 !    6.6   0.0    0.0067        10      53      81 .]    1471    1499 ..    1437    1499 .. 0.86
  13 ?    1.0   0.1      0.36   5.3e+02      54      73 ..    1573    1592 ..    1538    1600 .. 0.78
  14 ?    3.3   0.0      0.07     1e+02      52      75 ..    1672    1695 ..    1667    1701 .. 0.88
  15 !    8.1   0.0    0.0022       3.2      52      79 ..    1777    1804 ..    1755    1806 .. 0.84
  16 ?    2.2   0.1      0.15   2.2e+02      52      79 ..    1881    1908 ..    1862    1910 .. 0.79
  17 ?   -0.2   0.0      0.87   1.3e+03      57      76 ..    1986    2005 ..    1972    2010 .. 0.80
  18 ?    4.0   0.1     0.041        61      12      74 ..    2040    2104 ..    2034    2111 .. 0.82
  19 !    7.2   0.3    0.0043       6.4      41      81 .]    2273    2313 ..    2246    2313 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5
         HYR  46 rtaqpG..dsFpvGsttVtyvaeDesgnea 73 
                  t++ G  +++p G   V  +++D+ gn+ 
  EHT99806.1 254 VTLPAGslAELPNGALPVITTITDAGGNTL 283
                 444444115789999999999999999985 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
         HYR  59 ttVtyvaeDesgneasCkFtVtv 81 
                    t + +D +gn+ + +  Vtv
  EHT99806.1 371 VPYTVTLTDIAGNTSTASGSVTV 393
                 44455667888887644443333 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.26
         HYR  24 tvevffteptakdnsgqaalvsrtaqpGds...FpvGsttVtyvaeDesgneasCk 76 
                 t   +f+ +t++ +++ ++ + + + p++    ++ Gs t t +a+D +gn  + +
  EHT99806.1 431 TIVASFNGTTVTTTAN-TDGTWTLNVPDAAlsgLSDGSYTLTVTATDSAGNVSTNT 485
                 5556677777777766.55555555555441116789**************76444 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.15
         HYR  56 vGsttVtyvaeDesgneasCkFtVt 80 
                  Gs++ t  ++D++gn+a+++ + t
  EHT99806.1 568 DGSASYTVAVSDAAGNTATGSLDLT 592
                 5888889999*********998766 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.08
         HYR  52 dsFpvGsttVtyvaeDesgneasCkFtV 79 
                   +++Gst  t +++D++gn+ s   tV
  EHT99806.1 765 TALTEGSTGYTVTVTDAAGNSRSVAGTV 792
                 46899***************98644444 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.42
         HYR  52 dsFpvGsttVtyvaeDesgneasCkFtVt 80 
                 + +++G + +   ++D++gn++s   ++t
  EHT99806.1 964 QALTEGVNPIVVNVTDAAGNTGSLDSNIT 992
                 5689999*************997665555 PP

  == domain 7  score: -3.6 bits;  conditional E-value: 9.6
         HYR   60 tVtyvaeDesgnea 73  
                      + +D++gn+ 
  EHT99806.1 1072 ALDITLTDAAGNQT 1085
                  55667788888875 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.12
         HYR   53 sFpvGsttVtyvaeDesgneasCkFtVt 80  
                   +p G  +V  va+D +gn as +   t
  EHT99806.1 1168 ALPDGALSVVVVASDTAGNPASSTASLT 1195
                  47889999*************8876665 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.09
         HYR   32 ptakdnsgqaalvsrtaqpGdsFpvG.sttVtyvaeDesgneasCkFtVtv 81  
                  pt  d+ g + +v+  a   + +p G ++    +a+D++gn a+ + +V++
  EHT99806.1 1251 PTTIDANG-NWRVTVPADALADLPSGtEQAFVVTANDAAGNPAEASHNVAI 1300
                  67777777.77777777788889999666778899*********9999976 PP

  == domain 10  score: -1.0 bits;  conditional E-value: 1.5
         HYR   43 lvsrtaqpGdsFpvGsttVtyva 65  
                   v+ +++pG++ +v  ++++y+a
  EHT99806.1 1328 TVTGNSAPGAQISVTLNQISYTA 1350
                  5777899**************97 PP

  == domain 11  score: 5.0 bits;  conditional E-value: 0.02
         HYR   54 FpvGsttVtyvaeDesgneas 74  
                  ++ G +tVt +a+D sgn a+
  EHT99806.1 1370 LTDGVQTVTVTATDTSGNVAT 1390
                  67799*************883 PP

  == domain 12  score: 6.6 bits;  conditional E-value: 0.0067
         HYR   53 sFpvGsttVtyvaeDesgneasCkFtVtv 81  
                   +p G t+V+ +a+D +gn a+ ++ V++
  EHT99806.1 1471 GLPDGVTQVQVTASDVAGNPAEASVGVEI 1499
                  5889*****************99988865 PP

  == domain 13  score: 1.0 bits;  conditional E-value: 0.36
         HYR   54 FpvGsttVtyvaeDesgnea 73  
                  +  Gs+t + v +D++gn+ 
  EHT99806.1 1573 LADGSHTLSIVTTDRAGNTS 1592
                  5679**************97 PP

  == domain 14  score: 3.3 bits;  conditional E-value: 0.07
         HYR   52 dsFpvGsttVtyvaeDesgneasC 75  
                  +++p G+  Vt +++D +gn+as 
  EHT99806.1 1672 QTLPDGTWPVTITVTDVNGNTAST 1695
                  57899****************975 PP

  == domain 15  score: 8.1 bits;  conditional E-value: 0.0022
         HYR   52 dsFpvGsttVtyvaeDesgneasCkFtV 79  
                  ++ p Gs+++t  a D +gn+++ + +V
  EHT99806.1 1777 AQIPNGSHVITVSAADSAGNTDNTTLNV 1804
                  68899*****************999988 PP

  == domain 16  score: 2.2 bits;  conditional E-value: 0.15
         HYR   52 dsFpvGsttVtyvaeDesgneasCkFtV 79  
                  +s+  G  tVt  + D+ gn ++ +F+ 
  EHT99806.1 1881 NSLGSGPYTVTVNVVDATGNPGTAQFNF 1908
                  46777899*****************986 PP

  == domain 17  score: -0.2 bits;  conditional E-value: 0.87
         HYR   57 GsttVtyvaeDesgneasCk 76  
                  G+ + + va+D++gn+a+ +
  EHT99806.1 1986 GNYSLSVVATDAAGNSATLT 2005
                  67778889********9755 PP

  == domain 18  score: 4.0 bits;  conditional E-value: 0.041
         HYR   12 nnivrtvelgkstvevffteptakdnsgqaalvsrtaqpGd..sFpvGsttVtyvaeDesgneas 74  
                  +++v  +e+g+s +    +++  + ++g   + s t+ p++   F+  +tt t +++D++gn  +
  EHT99806.1 2040 SGVVTGAEIGTSLTVSLADTVLGTGIVGADGSWSLTLTPEQmrDFTQPTTTLTLTVSDQAGNPVT 2104
                  667888999999999999999999999988888888888873369999**************765 PP

  == domain 19  score: 7.2 bits;  conditional E-value: 0.0043
         HYR   41 aalvsrtaqpGdsFpvGsttVtyvaeDesgneasCkFtVtv 81  
                  + ++s  a+  + + +G+t+++++ +D++gn  s   tVtv
  EHT99806.1 2273 TWSTSVPASDMQALAEGQTVINAQLSDAAGNVTSVDRTVTV 2313
                  556666677778999****************9998888886 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2     3e+03      35      56 ..      58      79 ..      37      87 .. 0.75
   2 !    8.6   0.0    0.0012       1.7      25      63 ..     444     490 ..     433     492 .. 0.73
   3 ?    1.6   0.0      0.18   2.7e+02      36      63 ..     866     893 ..     864     895 .. 0.91
   4 ?   -2.6   0.0       3.6   5.4e+03      27      40 ..    1344    1355 ..    1336    1355 .. 0.78
   5 ?   -1.3   0.0       1.5   2.2e+03      42      65 ..    1376    1400 ..    1369    1401 .. 0.87
   6 ?   -1.0   0.0       1.1   1.7e+03      36      63 ..    1779    1804 ..    1775    1806 .. 0.79
   7 ?   -2.4   0.0       3.1   4.7e+03      35      54 ..    1882    1901 ..    1880    1909 .. 0.79
   8 ?   -1.1   0.0       1.3   1.9e+03      38      61 ..    1985    2008 ..    1982    2011 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
                S--SEEEEEEEEEEETTS-B-S CS
       Y_Y_Y 35 nlppGdYtlkVkakdndgqwny 56
                 lp+G+  ++V +++ +g+   
  EHT99806.1 58 ALPSGSNPFTVTVTNANGSQTT 79
                699***********99998765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
                 SSTS.........EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEE CS
       Y_Y_Y  25 sdysq........easytnlppGdYtlkVkakdndgqwnyditslsf 63 
                 ++++          a  + l+ G+Ytl+V a+d+ g+ + ++  l++
  EHT99806.1 444 TANTDgtwtlnvpDAALSGLSDGSYTLTVTATDSAGNVSTNTSNLTV 490
                 555445555555566667899***************99999777666 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.18
                 --SEEEEEEEEEEETTS-B-SS-EEEEE CS
       Y_Y_Y  36 lppGdYtlkVkakdndgqwnyditslsf 63 
                  p+G+Y l V ++d  g++  +++++++
  EHT99806.1 866 IPAGSYALAVTVSDLAGNSVTETREITV 893
                 699****************999999887 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.6
                  TS.EEEEES--SEE CS
       Y_Y_Y   27 ysqeasytnlppGd 40  
                  +  ++syt l  G+
  EHT99806.1 1344 N--QISYTALADGN 1355
                  3..9******9996 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 1.5
                  EEEEEEEETTS-B-SS-.EEEEEEE CS
       Y_Y_Y   42 tlkVkakdndgqwnydi.tslsfti 65  
                  t++V a+d +g+   d+ t+l++ i
  EHT99806.1 1376 TVTVTATDTSGNVATDSsTTLDVAI 1400
                  899******************9988 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 1.1
                  --SEEEEEEEEEEETTS-B-SS-EEEEE CS
       Y_Y_Y   36 lppGdYtlkVkakdndgqwnyditslsf 63  
                   p G+ +++V+a d+ g+ ++  t+l++
  EHT99806.1 1779 IPNGSHVITVSAADSAGNTDN--TTLNV 1804
                  689999********8888754..67666 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 3.1
                  S--SEEEEEEEEEEETTS-B CS
       Y_Y_Y   35 nlppGdYtlkVkakdndgqw 54  
                   l +G Yt++V + d  g+ 
  EHT99806.1 1882 SLGSGPYTVTVNVVDATGNP 1901
                  57899******999987775 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 1.3
                  SEEEEEEEEEEETTS-B-SS-EEE CS
       Y_Y_Y   38 pGdYtlkVkakdndgqwnyditsl 61  
                   G+Y l V a+d  g++   + +l
  EHT99806.1 1985 DGNYSLSVVATDAAGNSATLTETL 2008
                  6************99987665555 PP

>> DUF1905  Domain of unknown function (DUF1905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.021        32      36      61 ..     132     157 ..     116     160 .. 0.86
   2 ?   -0.6   0.0      0.94   1.4e+03      36      60 ..     232     256 ..     175     263 .. 0.83
   3 ?   -0.4   0.0       0.8   1.2e+03      37      79 ..     736     777 ..     730     779 .. 0.59
   4 ?    0.3   0.0       0.5   7.5e+02      36      61 ..     834     859 ..     826     862 .. 0.89
   5 ?   -0.4   0.0       0.8   1.2e+03      36      69 ..     934     965 ..     919     969 .. 0.82
   6 ?    2.4   0.0      0.11   1.6e+02      36      67 ..    1034    1063 ..    1016    1066 .. 0.77
   7 ?   -0.5   0.0      0.86   1.3e+03      37      55 ..    1138    1156 ..    1129    1163 .. 0.79
   8 ?   -1.6   0.0       1.9   2.9e+03      13      33 ..    1258    1278 ..    1238    1285 .. 0.57
   9 ?   -3.0   0.0       5.5   8.2e+03      11      40 ..    1355    1382 ..    1351    1382 .. 0.79
  10 ?    1.1   0.0      0.29   4.3e+02      37      54 ..    1441    1458 ..    1431    1468 .. 0.81
  11 ?    0.6   0.0       0.4     6e+02      37      55 ..    1542    1560 ..    1533    1581 .. 0.80
  12 ?    0.5   0.0      0.44   6.5e+02      34      66 ..    1640    1670 ..    1629    1676 .. 0.77
  13 ?   -3.7   0.0       8.7   1.3e+04      45      65 ..    1766    1791 ..    1761    1791 .. 0.76
  14 ?   -3.5   0.0       7.7   1.2e+04      12      37 ..    1868    1890 ..    1846    1894 .. 0.61
  15 ?   -0.6   0.0      0.94   1.4e+03      36      63 ..    1951    1976 ..    1942    1979 .. 0.81
  16 ?   -1.5   0.0       1.8   2.7e+03      36      55 ..    2155    2174 ..    2148    2182 .. 0.83
  17 ?   -1.2   0.0       1.4   2.1e+03      36      55 ..    2254    2273 ..    2239    2288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
                 EEEEEETT.EEEEEEEESSTT-EEEE CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiLp 61 
                 +V++t++g+t+++++ p g+ +  Lp
  EHT99806.1 132 QVSVTLNGVTYTGTVEPNGNWQITLP 157
                 69***************987666655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.94
                 EEEEEETT.EEEEEEEESSTT-EEE CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiL 60 
                 +V++ ++gt +++++  +g+ +  L
  EHT99806.1 232 QVTVSVNGTSYTGTVDAQGNWTVTL 256
                 5888999999999888877655544 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.8
                 EEEEETT.EEEEEEEESSTT-EEEEE-HHHHHHHT--TTSEEE CS
     DUF1905  37 VkatidgttfrtslfpmgkggyiLpvkaavrkaigkeaGdtvt 79 
                 V +t++g ++++++   g+ +  Lp +a     +g   G tvt
  EHT99806.1 736 VNVTFNGNIYSGTVDANGNWRVTLPADALTALTEGS-TGYTVT 777
                 778888888888887766655555544433333332.444444 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.5
                 EEEEEETT.EEEEEEEESSTT-EEEE CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiLp 61 
                  V+ t++++ ++t++  +g+ ++ Lp
  EHT99806.1 834 AVTITLNNQVWTTAVDAEGNWSFTLP 859
                 5999***********99999999887 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.8
                 EEEEEETT.EEEEEEEESSTT-EEEEE-HHHHHH CS
     DUF1905  36 kVkatidgttfrtslfpmgkggyiLpvkaavrka 69 
                  V++t++g  +++++    +g++ L +  +v +a
  EHT99806.1 934 TVTVTVGGNDYSATVDA--QGNWSLTLGSDVLQA 965
                 5999*****99999988..567877777777665 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.11
                  EEEEEETT.EEEEEEEESSTT-EEEEE-HHHH CS
     DUF1905   36 kVkatidgttfrtslfpmgkggyiLpvkaavr 67  
                   V++t+ g+t++t +  +g  ++ + + a+v+
  EHT99806.1 1034 TVTVTLQGQTYQTLVLQDG--SWQVNIPASVM 1063
                  699*************966..66666666665 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.86
                  EEEEETT.EEEEEEEESST CS
     DUF1905   37 Vkatidgttfrtslfpmgk 55  
                  V++t++g+ +++++  +g+
  EHT99806.1 1138 VTVTLNGQSYTGAVQADGS 1156
                  8899999999999988775 PP

  == domain 8  score: -1.6 bits;  conditional E-value: 1.9
                  S-EEEE--S-HHHHH..-.SS CS
     DUF1905   13 gwtfvevPedvseelktggkg 33  
                  g + v+vP+d+ ++l++g+ +
  EHT99806.1 1258 GNWRVTVPADALADLPSGTEQ 1278
                  334466666666666555555 PP

  == domain 9  score: -3.0 bits;  conditional E-value: 5.5
                  -.S-EEEE--S-HHHHH..-.SS-EEEEEE CS
     DUF1905   11 kggwtfvevPedvseelktggkgsvkVkat 40  
                  + g++ + +P+   ++l t g + v V+at
  EHT99806.1 1355 N-GAWTLAIPAADLQAL-TDGVQTVTVTAT 1382
                  4.566788999999999.888999999987 PP

  == domain 10  score: 1.1 bits;  conditional E-value: 0.29
                  EEEEETT.EEEEEEEESS CS
     DUF1905   37 Vkatidgttfrtslfpmg 54  
                  +++ti++++f+t++   g
  EHT99806.1 1441 ITVTIGDQPFTTTVAANG 1458
                  789*********999854 PP

  == domain 11  score: 0.6 bits;  conditional E-value: 0.4
                  EEEEETT.EEEEEEEESST CS
     DUF1905   37 Vkatidgttfrtslfpmgk 55  
                  V +t+dgt+ ++s+  +g+
  EHT99806.1 1542 VNVTVDGTPLTVSVDAQGN 1560
                  8999999999999887554 PP

  == domain 12  score: 0.5 bits;  conditional E-value: 0.44
                  -EEEEEEETT.EEEEEEEESSTT-EEEEE-HHH CS
     DUF1905   34 svkVkatidgttfrtslfpmgkggyiLpvkaav 66  
                     V++t++gt + +++    +g++ L + a+v
  EHT99806.1 1640 AAAVTVTVNGTLYAAAING--DGTWSLDLPASV 1670
                  678***********99977..457777766665 PP

  == domain 13  score: -3.7 bits;  conditional E-value: 8.7
                  EEEEEEEESST.....T-EEEEE-HH CS
     DUF1905   45 tfrtslfpmgk.....ggyiLpvkaa 65  
                   ++ +l p++      g++++ v+aa
  EHT99806.1 1766 SWSLTLTPDQMaqipnGSHVITVSAA 1791
                  57888888777778889999988875 PP

  == domain 14  score: -3.5 bits;  conditional E-value: 7.7
                  .S-EEEE--S-HHHHH..-.SS-EEE CS
     DUF1905   12 ggwtfvevPedvseelktggkgsvkV 37  
                  +g + v++P ++ + l   g g   V
  EHT99806.1 1868 DGNWSVTIPPNALNSL---GSGPYTV 1890
                  2445566666666666...3555555 PP

  == domain 15  score: -0.6 bits;  conditional E-value: 0.94
                  EEEEEETT.EEEEEEEESSTT-EEEEE- CS
     DUF1905   36 kVkatidgttfrtslfpmgkggyiLpvk 63  
                   V +t++gt f++ +  +g  ++ L+++
  EHT99806.1 1951 TVVVTLGGTSFDAVVQADG--SWTLALS 1976
                  588*********9999955..7777665 PP

  == domain 16  score: -1.5 bits;  conditional E-value: 1.8
                  EEEEEETT.EEEEEEEESST CS
     DUF1905   36 kVkatidgttfrtslfpmgk 55  
                   V+  i+gt++ t+l   g+
  EHT99806.1 2155 EVSIVINGTPYATTLDANGN 2174
                  58899*********988765 PP

  == domain 17  score: -1.2 bits;  conditional E-value: 1.4
                  EEEEEETT.EEEEEEEESST CS
     DUF1905   36 kVkatidgttfrtslfpmgk 55  
                   V++t++g t+++ +  +g+
  EHT99806.1 2254 AVTVTLNGKTYTAVVQTDGT 2273
                  5999******9999888775 PP

>> bMG5  Bacterial Alpha-2-macroglobulin MG5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.5   8.2e+03      76     114 ..     243     280 ..     236     288 .. 0.68
   2 ?   -1.7   0.0       2.4   3.6e+03      76     123 ..     746     794 ..     734     798 .. 0.63
   3 ?   -2.3   0.0       3.6   5.4e+03      74     121 ..     843     889 ..     833     894 .. 0.71
   4 ?   -3.3   0.0       7.6   1.1e+04      76     103 ..     945     972 ..     941     983 .. 0.70
   5 ?    3.0   0.0     0.086   1.3e+02      77     123 ..    1252    1298 ..    1241    1301 .. 0.90
   6 ?   -3.0   0.0       6.1   9.2e+03      74     102 ..    1580    1607 ..    1574    1609 .. 0.76
   7 ?   -2.4   0.0         4     6e+03      78     115 ..    1864    1900 ..    1859    1906 .. 0.71
   8 ?    7.3   0.0    0.0038       5.7      79     125 ..    2066    2111 ..    2052    2112 .. 0.88
   9 ?   -3.2   0.1       7.1   1.1e+04      79     121 ..    2268    2311 ..    2258    2315 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.5
        bMG5  76 dltldaeGkaelevelpelekakspleaevtvsllEsgG 114
                 + t+da+G+ ++++++ +l++  +  ++ v + ++++gG
  EHT99806.1 243 TGTVDAQGNWTVTLPAGSLAELPN-GALPVITTITDAGG 280
                 6789******99997766644433.23455556666666 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
        bMG5  76 dltldaeGkaelevelpelekakspleaevtvsllEsgG..RpVeRsler 123
                 + t+da+G+ ++++++++l++ ++  +   tv +++++G  R+V  ++e 
  EHT99806.1 746 SGTVDANGNWRVTLPADALTALTEG-STGYTVTVTDAAGnsRSVAGTVEV 794
                 6789999999999988888555443.334444444444422666655555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.6
        bMG5  74 ledltldaeGkaelevelpelekakspleaevtvsllEsgGRpVeRsl 121
                 + ++++daeG+ ++++++ +le      +  ++v +++ +G +V+ + 
  EHT99806.1 843 VWTTAVDAEGNWSFTLPAGALEGIPA-GSYALAVTVSDLAGNSVTETR 889
                 45788999999999997766655443.355677788888888887655 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 7.6
        bMG5  76 dltldaeGkaelevelpelekaksplea 103
                 ++t+da+G+ +l++  + l++ ++ ++ 
  EHT99806.1 945 SATVDAQGNWSLTLGSDVLQALTEGVNP 972
                 5789********9987777777666654 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.086
        bMG5   77 ltldaeGkaelevelpelekakspleaevtvsllEsgGRpVeRsler 123 
                  +t+da+G+ +++v++++l++  s  e  ++v   +++G p e s + 
  EHT99806.1 1252 TTIDANGNWRVTVPADALADLPSGTEQAFVVTANDAAGNPAEASHNV 1298
                  799***********************************999877665 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 6.1
        bMG5   74 ledltldaeGkaelevelpelekaksple 102 
                  l   t+d +G++++++ +++ ++a+ p++
  EHT99806.1 1580 LSIVTTDRAGNTSVTT-TQDFTTATAPIA 1607
                  556799********99.666777777775 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 4
        bMG5   78 tldaeGkaelevelpelekakspleaevtvsllEsgGR 115 
                  t+d++G+ +++++ ++l++  s    +vtv++ ++ G 
  EHT99806.1 1864 TVDNDGNWSVTIPPNALNSLGS-GPYTVTVNVVDATGN 1900
                  78999*****997777755554.345566666666665 PP

  == domain 8  score: 7.3 bits;  conditional E-value: 0.0038
        bMG5   79 ldaeGkaelevelpelekakspleaevtvsllEsgGRpVeRslerav 125 
                  ++a+G+ +l+++ +++++ ++p + ++t+ +++++G pV+++l+ +v
  EHT99806.1 2066 VGADGSWSLTLTPEQMRDFTQPTT-TLTLTVSDQAGNPVTQELSVPV 2111
                  6899*****************975.799**************99876 PP

  == domain 9  score: -3.2 bits;  conditional E-value: 7.1
        bMG5   79 ldaeGkaelevelpelekakspleaevtvsllEsgGR..pVeRsl 121 
                  + ++G+ +++v+++++++ ++  +  + ++l++++G   +V R++
  EHT99806.1 2268 VQTDGTWSTSVPASDMQALAEG-QTVINAQLSDAAGNvtSVDRTV 2311
                  5667777777777777555544.4456677777776422455554 PP

>> GatD_N  GatD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        27       2      22 ..     128     148 ..     127     155 .. 0.88
   2 ?   -1.8   0.0       1.3     2e+03       4      20 ..     230     246 ..     227     246 .. 0.89
   3 ?   -2.0   0.1       1.5   2.2e+03       1      21 [.     529     549 ..     529     552 .. 0.91
   4 ?   -1.7   0.1       1.2   1.8e+03       3      20 ..     732     749 ..     731     749 .. 0.92
   5 ?   -1.3   0.0      0.91   1.4e+03       2      21 ..    1030    1049 ..    1029    1053 .. 0.87
   6 ?    0.9   0.0      0.19   2.8e+02       3      20 ..    1134    1151 ..    1132    1153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
                 -TT-EEEEE-SS-EEEEEE-- CS
      GatD_N   2 evGDlikvekkgreyeGilmP 22 
                 e G+ ++v+ +g++y+G++ P
  EHT99806.1 128 EAGQQVSVTLNGVTYTGTVEP 148
                 789**************9966 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 T-EEEEE-SS-EEEEEE CS
      GatD_N   4 GDlikvekkgreyeGil 20 
                 G  + v  +g++y+G++
  EHT99806.1 230 GSQVTVSVNGTSYTGTV 246
                 8899***********87 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.5
                 --TT-EEEEE-SS-EEEEEE- CS
      GatD_N   1 ievGDlikvekkgreyeGilm 21 
                 +e+G+ + ++ +  +++G+++
  EHT99806.1 529 VEQGQTVTLTVGSDVFSGTVL 549
                 589****************98 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.2
                 TT-EEEEE-SS-EEEEEE CS
      GatD_N   3 vGDlikvekkgreyeGil 20 
                 vG+ + v+ +g  y+G++
  EHT99806.1 732 VGQTVNVTFNGNIYSGTV 749
                 799*************86 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.91
                  -TT-EEEEE-SS-EEEEEE- CS
      GatD_N    2 evGDlikvekkgreyeGilm 21  
                  ++G+ + v+ +g++y+ +++
  EHT99806.1 1030 DEGQTVTVTLQGQTYQTLVL 1049
                  79*************98777 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.19
                  TT-EEEEE-SS-EEEEEE CS
      GatD_N    3 vGDlikvekkgreyeGil 20  
                   G+++ v+ +g++y+G +
  EHT99806.1 1134 AGQVVTVTLNGQSYTGAV 1151
                  699*************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.22u 0.29s 00:00:01.51 Elapsed: 00:00:00.45
# Mc/sec: 16832.15
//
Query:       EHT99807.1  [L=887]
Description: two-component sensor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-36  123.9   0.0    9.2e-36  122.1   0.0    2.0  1  RcsD_ABL   RcsD-ABL domain
    1.8e-11   44.6   0.0    3.9e-11   43.5   0.0    1.6  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
    1.8e-11   44.1   0.3    1.6e-10   41.1   0.0    2.7  2  Hpt        Hpt domain
  ------ inclusion threshold ------
      0.011   15.7   6.1      0.015   15.3   4.0    2.5  2  HisKA      His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> RcsD_ABL  RcsD-ABL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0     2e-39   9.2e-36       1     103 []     680     782 ..     680     782 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 2e-39
    RcsD_ABL   1 eklLeditvllditseevrkivsrllenyGaelltkdernlsqeydilltDdpaklekstlLlsddetgveklkprrlrvNyNlsdalldAillLiEqq 99 
                 ek+Le++t+l++i+ e+v+kiv+r+len+Ga +lt+der ++q++d+ +tDdp kl+ ++lLl++de g+++l+++++rvN+Nls+alldA+l+LiE+q
  EHT99807.1 680 EKILEGVTALVEIAVEDVHKIVCRHLENWGARCLTPDERISGQDHDVQITDDPGKLSGWALLLAEDEPGHHALNDQQYRVNFNLSNALLDALLALIEKQ 778
                 79************************************************************************************************* PP

    RcsD_ABL 100 lald 103
                 l++d
  EHT99807.1 779 LSHD 782
                 *975 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   8.6e-15   3.9e-11       1     111 [.     558     670 ..     558     671 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 8.6e-15
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE...TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEE CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikase...ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwves 96 
                 gd + Lr+i+  l+  a+   t  g+i++ +k+ e   d++ i+  D+G G+++++l ++  +f  d s++r g+ +G+ + ++k+l+++mgG++++  
  EHT99807.1 558 GDRRALRKILTTLMHYALIT-TRWGKITLAVKTAEnqpDRVYIELVDTGAGLTVDELANVDFPFLGDTSQDRYGQASGMAFFLCKQLCKQMGGSLEIVA 655
                 68999999999999999996.899999999997335579*******************7777****88999999************************* PP

                 ETTTEEEEEEEEESS CS
   HATPase_c  97 epgrGttftftlple 111
                 + ++Gt++ ++lpl+
  EHT99807.1 656 KADIGTRYNIQLPLT 670
                 ************996 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.6      0.67     3e+03      14      34 ..     437     460 ..     422     480 .. 0.66
   2 !   41.1   0.0   3.5e-14   1.6e-10       2      78 ..     802     881 ..     801     886 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.67
                 HHHHHHHHSCC..HHHH.HHHHHH CS
         Hpt  14 leqleqaldqe..dlqe.laraaH 34 
                 l++++q ld++   +q+ l ++ H
  EHT99807.1 437 LQKAQQVLDRNhqMRQQlLHHLGH 460
                 666666664444433331333334 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 3.5e-14
                 HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH..HCTSCHHHHHHHH.HHHHH CS
         Hpt   2 llelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlld..ragelelepelle.alkal 78 
                 + +lf e++++++++l +  + +d+ +la++aH+LKG  +ml lt+ ++l++elE+ ++   +++ + + ++++  +++l
  EHT99807.1 802 YFQLFTETVPDDVKRLYTESAINDYASLAQTAHRLKGVFAMLNLTPGKQLCEELEHHIKvcDDSNIKNTTSNIDaYVNQL 881
                 5799************999999**********************************888777777777777777534433 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   4.0   3.5e-06     0.015       1      66 [.     450     510 ..     450     511 .. 0.91
   2 ?   -3.7   0.0         3   1.3e+04      44      60 ..     867     883 ..     865     884 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.5e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +++++l ++ H L++PL  i   +  L+       +  e + +i +e++ l +lv+d+  l r+ea
  EHT99807.1 450 MRQQLLHHLGHALNQPLEKIVSQLVQLSQ-----RDNDESVLDILDESQSLARLVDDIVLLNRLEA 510
                 689***************99999888855.....478899999*******************9997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHHHHH CS
       HisKA  44 iesearrldhlvedlLd 60 
                 i++ +  +d+ v++lL+
  EHT99807.1 867 IKNTTSNIDAYVNQLLQ 883
                 66778889999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6102.20
//
Query:       EHT99808.1  [L=216]
Description: DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-25   87.2   0.1    1.3e-24   86.5   0.1    1.3  1  Response_reg     Response regulator receiver domain
    1.3e-18   66.3   0.2    2.1e-18   65.6   0.2    1.4  1  GerE             Bacterial regulatory proteins, luxR family
      7e-05   22.4   0.2    0.00016   21.3   0.2    1.6  1  Sigma70_r4_2     Sigma-70, region 4
    7.2e-05   22.2   0.1    0.00016   21.1   0.1    1.6  1  Sigma70_r4       Sigma-70, region 4
    0.00073   19.2   0.0     0.0017   18.1   0.0    1.6  1  HTH_38           Helix-turn-helix domain
     0.0008   19.1   0.0     0.0041   16.9   0.0    1.9  2  HTH_23           Homeodomain-like domain
  ------ inclusion threshold ------
      0.042   13.4   0.0        0.1   12.2   0.0    1.6  2  DUF2121          Uncharacterized protein conserved in archaea
      0.084   12.5   0.0         25    4.5   0.0    2.9  3  Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase
       0.11   12.6   0.0       0.59   10.2   0.0    2.0  2  HTH_29           Winged helix-turn helix
       0.11   11.7   0.0       0.28   10.4   0.0    1.6  2  DUF2357          Domain of unknown function (DUF2357)
       0.17   11.8   0.0       0.63   10.0   0.0    1.8  2  Terminase_5      Putative ATPase subunit of terminase (gpP-li


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   8.1e-28   1.3e-24       1     111 [.       6     120 ..       6     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 8.1e-28
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS...SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCT CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpg...mdGlellkeireedpelpviiltahseeedavealkag 93 
                   v+i+dD+p+v+ ++r+ le  e++++v+e+ed+++++++l + + +++++D++mpg    dG++l+k i+++ p+l +i+lt++++ + +  +l+++
    EHT99808.1   6 VIIADDHPIVLFGIRKSLEqIEWVNVVGEFEDSTALINNLSKLDANVLITDLSMPGekyGDGITLIKYIKRHYPDLSIIVLTMNNNPAILSSVLDLD 102
                   89*****************77***********************************5555************************************* PP

                   ESEEEESSG-HHHHHHHH CS
  Response_reg  94 addflsKpfdpeeLlkal 111
                   +++++ K+ +p++L kal
    EHT99808.1 103 IEGIVLKQGAPTDLPKAL 120
                   **************9987 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.2   1.3e-21   2.1e-18       2      56 ..     150     204 ..     149     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 1.3e-21
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                  Ls++E+evLrl+aeG+ ++eIA++ln S kT++++k+++m+KL+v ++++l ++
  EHT99808.1 150 RLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNY 204
                 7*************************************************99887 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   9.6e-08   0.00016      10      54 .]     150     193 ..     149     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 9.6e-08
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +L+++++e++ l + eg+   EIA++l+ s +t+ s+ + A+ kL
    EHT99808.1 150 RLSPKESEVLRL-FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193
                   7***********.89*********************999999887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   9.7e-08   0.00016       4      48 ..     150     193 ..     149     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.7e-08
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L+++e evl+l f eg    EI+++l+ S  ++++ +k A++kL
  EHT99808.1 150 RLSPKESEVLRL-FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193
                 7**********9.899999*************************9 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     1e-06    0.0017       3      38 ..     149     183 ..     148     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1e-06
      HTH_38   3 khLsleeReeIerllaeGlslreIArrLgrspsTIs 38 
                 k+Ls+ e  e  rl aeG  + eIA++L+rs  TIs
  EHT99808.1 149 KRLSPKES-EVLRLFAEGFLVTEIAKKLNRSIKTIS 183
                 79999999.7889**********************8 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.86   1.4e+03      11      27 ..     120     138 ..     118     143 .. 0.69
   2 !   16.9   0.0   2.5e-06    0.0041       9      35 ..     157     183 ..     154     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.86
      HTH_23  11 llllae..GlsvreIAreL 27 
                 l +l++  +++++ +A++L
  EHT99808.1 120 LAALQKgkKYTPESVAKLL 138
                 4555557799999999988 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.5e-06
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy 35 
                 ++l+l+aeG  v+eIA++L++s  T++
  EHT99808.1 157 EVLRLFAEGFLVTEIAKKLNRSIKTIS 183
                 689**********************97 PP

>> DUF2121  Uncharacterized protein conserved in archaea (DUF2121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05       0.1      13      64 ..       5      56 ..       1      66 [. 0.94
   2 ?   -2.8   0.0       2.3   3.7e+03     162     169 ..     177     184 ..     157     202 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
     DUF2121 13 aviagDkReiafrgdeeerekLEeeLYsGeiktdeeLkkkaeelgvkikitd 64
                 vi +D   i+ +g ++++e++E     Ge ++   L ++ ++l++++ itd
  EHT99808.1  5 NVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDANVLITD 56
                69999**********************************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
     DUF2121 162 ektasvsk 169
                 ++  ++s+
  EHT99808.1 177 RSIKTISS 184
                 22222222 PP

>> Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.015        25      25      58 ..      32      63 ..      28      67 .. 0.88
   2 ?    3.5   0.0     0.031        50      33      81 ..      69     120 ..      64     127 .. 0.66
   3 ?    0.6   0.0      0.24   3.9e+02     121     166 ..     150     198 ..     145     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.015
  Glycos_transf_N 25 vGEveaalpLiealrerkpelkillTttTptGae 58
                     vGE+e  ++Li++l +   ++++l+T  +  G++
       EHT99808.1 32 VGEFEDSTALINNLSKL--DANVLITDLSMPGEK 63
                     8*************987..699****99988876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.031
  Glycos_transf_N  33 pLiealrerkpelkillTttTptGaevakklla....ervdhvylPlDlpaav 81 
                       Li+ +++++p+l+i++ t+ +  a  + + l       v  + +P Dlp+a 
       EHT99808.1  69 TLIKYIKRHYPDLSIIVLTMNNNPAI-LSSVLDldieGIVLKQGAPTDLPKAL 120
                      79**********99977666655543.22222224435555557777777765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.24
  Glycos_transf_N 121 rlserslrryrrfka..llrsllskfdl.ilaqseedaerlralgapee 166
                      rls++  +  r f++  l+ ++ +k+++ i + s++++  + +lg++++
       EHT99808.1 150 RLSPKESEVLRLFAEgfLVTEIAKKLNRsIKTISSQKKSAMMKLGVDND 198
                      8889988888888555688888888865367889999999999999974 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.78   1.3e+03      14      46 ..     130     139 ..     118     155 .. 0.49
   2 ?   10.2   0.0   0.00036      0.59       4      34 ..     158     187 ..     157     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.78
      HTH_29  14 tvsqiAkllglsrrtvyrwlkrfeegGlaalld 46 
                 t+  +Ak                       ll+
  EHT99808.1 130 TPESVAK-----------------------LLE 139
                 4444444.......................333 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00036
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrwlk 34 
                 +l+l aeG   v +iAk l+ s +t+   +k
  EHT99808.1 158 VLRLFAEGFL-VTEIAKKLNRSIKTISSQKK 187
                 899******9.*************9987665 PP

>> DUF2357  Domain of unknown function (DUF2357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.76   1.2e+03     116     152 ..      42      78 ..      35      85 .. 0.79
   2 ?   10.4   0.0   0.00017      0.28      53     132 ..     130     215 ..      96     216 .] 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.76
     DUF2357 116 adklkkldsavleellkepeklgeverlgkkllprrv 152
                 ++ l+kld++vl++ l+ p + +++ +   k+++r++
  EHT99808.1  42 INNLSKLDANVLITDLSMPGEKYGDGITLIKYIKRHY 78 
                 6789999999999999999998888777666766666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00017
     DUF2357  53 yaelifellkkteqsarkskakesselewfallrk......lreeLeqalklIlrqpherLveeeevvradklkkldsavleellk 132
                  +e + +ll+k++ +   +k+  ++e+e ++l+ +      ++++L++++k+I +q ++++++      +  l++l+s  + ++ k
  EHT99808.1 130 TPESVAKLLEKISAGGYGDKRLSPKESEVLRLFAEgflvteIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSATQIDK 215
                 5667778899999999999999999********99999999**********************99999999999999988877665 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9     3e+03      12      23 ..     127     138 ..     127     140 .. 0.85
   2 ?   10.0   0.0   0.00038      0.63       9      34 ..     161     186 ..     159     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
  Terminase_5  12 qGyrvaeIAeel 23 
                  ++y++ ++A+ l
   EHT99808.1 127 KKYTPESVAKLL 138
                  68*****99987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00038
  Terminase_5   9 LYwqGyrvaeIAeelglkeatVysWk 34 
                  L+  G+ v+eIA+ l+++ +t+ s k
   EHT99808.1 161 LFAEGFLVTEIAKKLNRSIKTISSQK 186
                  8899*****************98855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1550.47
//
Query:       EHT99809.1  [L=948]
Description: hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-31  106.3   0.3    2.9e-30  104.7   0.1    2.0  2  Response_reg  Response regulator receiver domain
    1.3e-28   98.8   0.4    1.6e-27   95.3   0.0    2.9  3  RcsC          RcsC Alpha-Beta-Loop (ABL)
    2.3e-27   95.7   0.0    4.8e-27   94.7   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    8.5e-16   57.8   0.4    4.3e-15   55.5   0.1    2.5  2  HisKA         His Kinase A (phospho-acceptor) domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   4.9e+03      43      53 ..     741     751 ..     715     753 .. 0.47
   2 !  104.7   0.1   6.5e-34   2.9e-30       1     109 [.     826     933 ..     826     936 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                   HESEEEEESSC CS
  Response_reg  43 kvdlillDinm 53 
                   + d++l+D  m
    EHT99809.1 741 SDDVVLTDYAM 751
                   23555555555 PP

  == domain 2  score: 104.7 bits;  conditional E-value: 6.5e-34
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vlivdD+p++r+ll+++l   gy +v++a+dg +al+ l ++++d++l+D+nmp+mdG++l++++r+  +  pvi +ta++  e+++++++ag+d +
    EHT99809.1 826 VLIVDDHPINRMLLSEQLGTLGY-QVKTAQDGVDALNVLSRNTIDIVLTDVNMPNMDGYRLAQRLRQLGHVFPVIGVTANALAEEKQRCMDAGMDNC 921
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHH CS
  Response_reg  98 lsKpfdpeeLlk 109
                   lsKp++ + L++
    EHT99809.1 922 LSKPVTLDVLKS 933
                   ******999986 PP

>> RcsC  RcsC Alpha-Beta-Loop (ABL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.27   1.2e+03      67      80 ..     189     202 ..     176     203 .. 0.71
   2 !   95.3   0.0   3.5e-31   1.6e-27       1      91 []     708     797 ..     708     797 .. 0.98
   3 ?   -2.4   0.0       1.1   4.7e+03      30      44 ..     816     832 ..     811     840 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
        RcsC  67 eiregeWlhstatl 80 
                 ++++ +W+ s+a++
  EHT99809.1 189 QRNPAYWVSSSAQP 202
                 57799*****9986 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 3.5e-31
        RcsC   1 cwLairNasLeeylqrlLsesgltvaryeeqevseddvlitDepeaeaievravielseehigapqeiregeWlhstatlhelpalLerly 91 
                 +wLa+rN++L++yl rlL+++g++va+  ++ +++ddv++tD+  ++ ++vravi++ + h+++p e ++g+W+hstatlhelp+lL+r+y
  EHT99809.1 708 IWLAMRNEYLAQYLDRLLKQHGFQVADMLAN-PGSDDVVLTDYAMETFPQVRAVITFDGAHVDMPREPQAGRWIHSTATLHELPTLLARIY 797
                 8*************************98776.9*********************************************************9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.1
        RcsC  30 eqevseddv..litDep 44 
                 e+++++dd+  li+D++
  EHT99809.1 816 EEKIHNDDImvLIVDDH 832
                 57889999722566765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   1.1e-30   4.8e-27       1     109 [.     580     688 ..     580     691 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.1e-30
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd+ rL+q+isnl+ Na+kf t++g+i ++  +++++l ++ +D+G Gip ++l +lf++f q  ++ +r+ +gtGlGl+i++kl+++m+G+i+vesep
  EHT99809.1 580 GDPLRLQQVISNLLNNAIKF-THTGCIILHAYVTQGYLAFRMRDTGVGIPAKELTRLFDPFFQvGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 677
                 7999****************.999999999888899****************************9999******************************* PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                 g G++f++++p
  EHT99809.1 678 GMGSQFIVRIP 688
                 ********998 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   9.5e-19   4.3e-15       1      66 [.     468     532 ..     468     533 .. 0.95
   2 ?   -4.2   0.0         4   1.8e+04      34      46 ..     714     726 ..     709     727 .. 0.73

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 9.5e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 s++ fla+v+HELrtPL +i+gn+++L+ + +l+     ++  + +++  l+++++d+Ld+s+ie+
  EHT99809.1 468 SKSMFLATVSHELRTPLYGIIGNLDLLQTR-QLPSGIDSLVTAMNNSSSLLLKIISDILDFSKIES 532
                 6899***********************775.8999999**************************98 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4
                 HSSCHHHHHHHHH CS
       HisKA  34 teelkeyleties 46 
                 +e l++yl+++ +
  EHT99809.1 714 NEYLAQYLDRLLK 726
                 4778999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6691.44
//
Query:       EHT99810.1  [L=880]
Description: DNA gyrase (type II topoisomerase), subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.6e-156  520.4   0.0   4.5e-156  520.0   0.0    1.1  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    5.9e-78  256.2  11.7    1.1e-13   50.5   0.1    6.6  7  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.0   0.0    5e-160  4.5e-156       1     425 [.      32     506 ..      32     507 .. 0.98

  Alignments for each domain:
  == domain 1  score: 520.0 bits;  conditional E-value: 5e-160
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkdAaaRYietr 95 
                    Ra+P+vrDGlKPv+Rr+Lyam++l ++ +k++kK+a++vG+v+gkYhPHGd+++y +ivr+aq f++++ l+d+qGnfGsi dgd++Aa+RY+e+r
     EHT99810.1  32 RALPDVRDGLKPVHRRVLYAMSELgNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEVR 126
                    9********************************************************************************.************** PP

  DNA_topoisoIV  96 LskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptggg 188
                    +skia++ll++++ketvd+++nyDg+e+ Pevlp++iPnlLvnG++GIavGmat+ipphnl+e+i+ + a++++e++    l+e+++gPdfpt ++
     EHT99810.1 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNLREVINGCLAYIEDENIsveGLMEHIPGPDFPTAAI 222
                    ****************************************************************************99999*************** PP

  DNA_topoisoIV 189 iigkeeikeayetgrGkikvrakveie.....e.ktivitElPigvntskliekieelvkkkkik.isdirdesdr.gvrivielkrgaseekvle 276
                    i g+ +i+eay+tgrGk+ +ra+ e+e     + +tivi ElP++vn+++lieki+elvk+k+++ is +rdesd+ g+rivie+kr+a  e+vl+
     EHT99810.1 223 INGRRGIEEAYRTGRGKVYIRARGEVEvdaktGrETIVIHELPYQVNKARLIEKIAELVKEKRVEgISALRDESDKdGMRIVIEIKRDAVGEVVLN 318
                    *******************9999999899*9945***************************************9999******************* PP

  DNA_topoisoIV 277 klykktkLessisvnnlvlfdkkpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLiee. 371
                    +ly+ t+L++s+ +n+++l++++pk++ lkeil++f+++r+ev++rr+ ++l+k+++r++ilegl +al +id +ie+ir+  + ++ak+ Li++ 
     EHT99810.1 319 NLYSLTQLQTSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLISQs 414
                    **********************************************************************************************97 PP

  DNA_topoisoIV 372 ..lse.................................eqaeyllemrlrrLtkeeveklekeieelekeikelekllak...lkklikeel 425
                      l +                                 +qa+++l++rl++Lt +e+ekl +e+++l ++i+el ++l++   l+++i+eel
     EHT99810.1 415 waLGNvaamleragddaarpewleaqfgirdgqyylteQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILSSserLMEVIREEL 506
                    66555999******************************9***************************************99888899999887 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.84   7.6e+03      25      38 ..     234     247 ..     231     250 .. 0.74
   2 !   39.6   0.0   2.8e-14   2.5e-10       1      47 [.     538     584 ..     538     585 .. 0.93
   3 !   41.5   0.0   7.6e-15   6.8e-11       1      47 [.     588     637 ..     588     638 .. 0.97
   4 !   35.4   0.0     6e-13   5.4e-09       2      48 .]     645     689 ..     645     689 .. 0.94
   5 !   50.5   0.1   1.2e-17   1.1e-13       1      46 [.     692     737 ..     692     739 .. 0.96
   6 !   44.1   0.1   1.2e-15     1e-11       3      45 ..     744     787 ..     742     789 .. 0.94
   7 !   47.5   0.4     1e-16   9.1e-13       1      47 [.     793     839 ..     793     840 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.84
                    TTSCTEEGSETTTT CS
  DNA_gyraseA_C  25 RgakGvkgiklkeg 38 
                    R+++G+  i+ + +
     EHT99810.1 234 RTGRGKVYIRARGE 247
                    78899988887765 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 2.8e-14
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    d +++ +++Gyvk  pls++ +q+Rg+kG+ + ++ke+d++  +lv+
     EHT99810.1 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVA 584
                    6799************************************9877775 PP

  == domain 3  score: 41.5 bits;  conditional E-value: 7.6e-15
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS...ETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgi...klkegdklvsvlvv 47 
                    d +l+++s+G+ +++++++lpe +Rga+G +++    l+ +++++++l+v
     EHT99810.1 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVnllPLEANERITAILPV 637
                    78**********************************************98 PP

  == domain 4  score: 35.4 bits;  conditional E-value: 6e-13
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEES CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvvs 48 
                    +++++T  G vk++ l e+++ + +  G+++i+l+++d+l++v++++
     EHT99810.1 645 NIFMATASGTVKKTGLQEFSRPRSA--GIIAINLRDDDELIGVALTN 689
                    69*********************66..****************9886 PP

  == domain 5  score: 50.5 bits;  conditional E-value: 1.2e-17
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlv 46 
                    de +l++ +G+v+rf +s ++++gR+a+Gv+gikl  +d++vs++v
     EHT99810.1 692 DEAMLFSAAGKVVRFAESAVRAMGRTASGVRGIKLAQNDRVVSLIV 737
                    6779***************************************997 PP

  == domain 6  score: 44.1 bits;  conditional E-value: 1.2e-15
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTT.SSEEEEE CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklkeg.dklvsvl 45 
                    +l++T+nGy+kr+  se+p ++R+++Gv+ ik +e+ + +++++
     EHT99810.1 744 ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERnGPVIGAV 787
                    89*********************************999999886 PP

  == domain 7  score: 47.5 bits;  conditional E-value: 1e-16
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    d +++iT++G  +r+++se++  gR+++Gv++i++ e++ +v++  v
     EHT99810.1 793 DQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV 839
                    78*****************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6074.69
//
Query:       EHT99811.1  [L=242]
Description: 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-23   83.1   0.0    2.7e-23   82.6   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      6e-20   71.7   0.1    9.9e-20   71.0   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
    6.3e-18   65.3   0.1    9.6e-18   64.7   0.1    1.3  1  Methyltransf_25  Methyltransferase domain
    2.6e-15   56.5   0.0    3.4e-15   56.1   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    9.8e-15   55.1   0.0    1.6e-14   54.4   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    4.9e-09   36.1   0.0    5.8e-09   35.9   0.0    1.1  1  NodS             Nodulation protein S (NodS)
    1.3e-08   34.5   0.0    1.9e-08   34.0   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    2.2e-08   33.7   0.0    2.7e-08   33.5   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      4e-06   26.5   0.0    5.4e-06   26.0   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    5.3e-06   26.1   0.1    8.2e-06   25.5   0.1    1.4  1  MTS              Methyltransferase small domain
    0.00011   21.2   0.0    0.00016   20.7   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
     0.0027   17.3   0.0     0.0041   16.7   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
     0.0065   16.5   0.0     0.0098   15.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
       0.03   13.7   0.2       0.11   11.8   0.2    1.8  1  GidB             rRNA small subunit methyltransferase G
       0.13   12.2   0.0        0.2   11.6   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
       0.16   11.4   0.0       0.47    9.9   0.0    1.7  2  DUF4390          Domain of unknown function (DUF4390)
       0.22   10.6   0.0       0.51    9.4   0.0    1.5  1  DREV             DREV methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   2.6e-26   2.7e-23      23     150 ..      57     196 ..      37     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 2.6e-26
  Methyltransf_23  23 ggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatll 109
                      g++vLd+GcG Gil+e+++++g+ vtg D+  e  e a+        +  ++++ + e+ a++ +g++d+++++e+lehvpdp ++++  a+l+
       EHT99811.1  57 GKKVLDVGCGGGILAESIAREGAIVTGLDMGAEPLEVARlhalesgVTLDYVQQTV-EEHASQHAGQYDVVTCMEMLEHVPDPRSVVHACAQLV 149
                      579****************************99999999******74444444444.799********************************** PP

  Methyltransf_23 110 kpgGylllseplaslk.edrl...lldwlylvpagrhi..sffsars 150
                      kpgG +++s+++++ k ++++   ++++l +vp+g+h   +f++ ++
       EHT99811.1 150 KPGGEVFFSTINRNPKaWLMAifgAEYVLRMVPRGTHDvkKFIRPSE 196
                      ************98754665543344455566666664455555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   9.4e-23   9.9e-20       1      96 []      61     157 ..      61     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 9.4e-23
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      LdvGcG+G+lae +a+ ga v+g+D+ +e l++a+ +a e+g+++++v++++e+      +++D+v++ e+l+hv+dp++++  +a+++kpgG 
       EHT99811.1  61 LDVGCGGGILAESIAREGAIVTGLDMGAEPLEVARLHALESGVTLDYVQQTVEEHaSQHAGQYDVVTCMEMLEHVPDPRSVVHACAQLVKPGGE 154
                      8****************************************************97477889********************************9 PP

                      EEE CS
  Methyltransf_11  94 lvi 96 
                      +++
       EHT99811.1 155 VFF 157
                      886 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.1   9.1e-21   9.6e-18       1      97 []      60     153 ..      60     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 9.1e-21
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+GcG G l++ +a+++  a vtg+D+ +e le ar +a e+g+ +++vq+ +e+  ++++g++D+v+++ +l+h++  d + +++ +a+++
       EHT99811.1  60 VLDVGCGGGILAESIAREG--AIVTGLDMGAEPLEVARLHALESGVTLDYVQQTVEEhASQHAGQYDVVTCMEMLEHVP--DPRSVVHACAQLV 149
                      9*****************5..**********************************77367999********888***98..6679********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       EHT99811.1 150 KPGG 153
                      ***9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   3.2e-18   3.4e-15       4     113 ..      57     161 ..      56     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 3.2e-18
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkilee 96 
                      g++vlD+GCG G l+  +a+   ++a v+G+D+ +e +e+Ar +a + g++ +   q+ +ee ++++    ++D++++ e l +++dp ++   
       EHT99811.1  57 GKKVLDVGCGGGILAESIAR---EGAIVTGLDMGAEPLEVARLHALESGVT-LDYVQQTVEEhASQH--AGQYDVVTCMEMLEHVPDPRSVVHA 144
                      579****************4...4799***********************8.9999******77744..589********************** PP

  Methyltransf_31  97 iervlkpggilliedpr 113
                        +++kpgg++  ++++
       EHT99811.1 145 CAQLVKPGGEVFFSTIN 161
                      *************9999 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.5e-17   1.6e-14       1      98 [.      61     154 ..      61     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.5e-17
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcG G l++ ++++  ++ +tg+D  ++ +e a+ +  + +    + v+ ++++ ++++  +++D+v++ + l+h++d+r+v++ +++l+k
       EHT99811.1  61 LDVGCGGGILAESIARE--GAIVTGLDMGAEPLEVARLHALESGV-TLDYVQQTVEEHASQHA-GQYDVVTCMEMLEHVPDPRSVVHACAQLVK 150
                      8****************..**************888888777664.44555555555444444.4***************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG 
       EHT99811.1 151 PGGE 154
                      ***6 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   5.5e-12   5.8e-09      46     171 ..      59     184 ..      13     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.5e-12
        NodS  46 dalevGcaaGalterlapyckrltvvdvveeaiararervkes.shiswivsdvqqfstde..kfdlivvaevlyyiedvaelraavrnlvsllapdgq 141
                 ++l+vGc  G l+e +a     +t +d+  e ++ ar    es   + ++++ v++  +++  ++d++ + e+l ++ d    r+ v+   +l++p+g+
  EHT99811.1  59 KVLDVGCGGGILAESIAREGAIVTGLDMGAEPLEVARLHALESgVTLDYVQQTVEEHASQHagQYDVVTCMEMLEHVPDP---RSVVHACAQLVKPGGE 154
                 69***********************************987765257899999**9987764349********99877775...777888899999*999 PP

        NodS 142 lvfGsardavcrrwG.hvaGaetvlallnes 171
                 + f s+++ + + w   ++Gae vl ++   
  EHT99811.1 155 V-FFSTINRNPKAWLmAIFGAEYVLRMVPRG 184
                 5.6699********72579*******98765 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.8e-11   1.9e-08      63     176 ..      57     169 ..      47     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.8e-11
                 T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SS.S-EEEEES-GG.G-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT CS
        CMAS  63 GmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldle.rkvevklldye.dldekvdrvvsvgafehvgkenydtffkklkkllked 159
                 G+++Ld+GcG G l+   +++ ++ v gl + +e  ++a+ +  e +++ + v+ ++ ++  + ++++d v  ++++ehv   +    ++++ +l+k++
  EHT99811.1  57 GKKVLDVGCGGGILAESIARE-GAIVTGLDMGAEPLEVARLHALESGVTlDYVQQTVEEHAsQHAGQYDVVTCMEMLEHVPDPR--SVVHACAQLVKPG 152
                 99********88888887777.*****************987777775426666666666515556**************9877..567899******* PP

                 -EEEEEEEEE--HHHHH CS
        CMAS 160 Gllllhtitslhkkela 176
                 G +   ti +  k +l 
  EHT99811.1 153 GEVFFSTINRNPKAWLM 169
                 ********988777766 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.5e-11   2.7e-08      38     153 ..      47     159 ..      14     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 2.5e-11
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-.T-EEEEEEES-GGG- CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfed.dsfDvvtvsfGlrnv 129
                      ++ + + ++ g+kvlDv +G g la ++     ++g  v++lD+ ++ L+v++ ++ e+g+  ++++q   ee   +  + +Dvvt    l  v
       EHT99811.1  47 YIAQHSHGLFGKKVLDVGCGGGILAESI----AREGaIVTGLDMGAEPLEVARLHALESGV-TLDYVQQTVEEHASQHaGQYDVVTCMEMLEHV 135
                      56777888999**********9776554....445526889****************9997.69****999998877769************** PP

                      S-HHHHHHHHHHHEEEEEEEEEEE CS
  Ubie_methyltran 130 tDklkaLkeayrvlkpGGrlvvle 153
                      +D   +++   + +kpGG+++   
       EHT99811.1 136 PDPRSVVHACAQLVKPGGEVFFST 159
                      ******************998654 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   5.1e-09   5.4e-06     162     261 ..      57     160 ..      47     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.1e-09
        PrmA 162 geevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellk.eekadvivaNILaevl...ielaedikklvkeggl 255
                 g++vlDvG+G GiLa   a+ ga  v+++D+    ++va+  a   +v+   ++ +++e++ + ++++dv+ +  + e +    + +   ++lvk+gg 
  EHT99811.1  57 GKKVLDVGCGGGILAESIAREGAI-VTGLDMGAEPLEVARLHALESGVTLdYVQQTVEEHASQhAGQYDVVTCMEMLEHVpdpRSVVHACAQLVKPGGE 154
                 689*************99999986.99***************9999999843433444444434799*****9877777634457999999******** PP

        PrmA 256 lilSGi 261
                 + +S i
  EHT99811.1 155 VFFSTI 160
                 999987 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   7.7e-09   8.2e-06      31     103 ..      56     128 ..      45     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7.7e-09
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST..TS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve..ekkfdlivs 103
                 + +kvlD+GcG G+l+ ++a+e     vt +d  a+ le+a+  + ++++ +++v++ v e+++   +++d++ +
  EHT99811.1  56 FGKKVLDVGCGGGILAESIAREGAI--VTGLDMGAEPLEVARLHALESGVTLDYVQQTVEEHASqhAGQYDVVTC 128
                 6789****************97665..9***********************998888887776533478888865 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.5e-07   0.00016     107     220 ..      48     160 ..      43     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.5e-07
                     HGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE-..--HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GGG-S-H CS
  Methyltransf_9 107 vlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGid..Pselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvlyhrrsP 198
                     + +h   l g+++ldvGcg G      ++++ ++v G+d   + l +  ++a++  ++ d  ++++    e+  +    +d+v  m +l h   P
      EHT99811.1  48 IAQHSHGLFGKKVLDVGCGGGILA-ESIAREGAIVTGLDmgAEPLEVARLHALESGVTLDYVQQTV---EEHASQhAGQYDVVTCMEMLEHVPDP 138
                     567888999**********99866.56666667888888223567788999999999888877776...3444443778**************** PP

                     HHHHHHHHCTEEEEEEEEEEEE CS
  Methyltransf_9 199 ldhllqlkdqlvkgGelvletl 220
                        + +  + ++ gGe+ + t+
      EHT99811.1 139 RSVVHACAQLVKPGGEVFFSTI 160
                     **99999999999***998875 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06    0.0041      14      97 ..      57     144 ..      52     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
        MetW  14 gsrvldlGcGdGellellkeekqvdgrGleldee..gv..aecvakGlsv..iqgdldkdlenfedksfdyvvlsqtlqatrnpkevlde 97 
                 g +vld+GcG G l e ++ e  +   Gl++ +e   v   ++++ G+++  +q+ +++  ++++  ++d+v     l  + +p++v++ 
  EHT99811.1  57 GKKVLDVGCGGGILAESIAREGAI-VTGLDMGAEplEVarLHALESGVTLdyVQQTVEEHASQHAG-QYDVVTCMEMLEHVPDPRSVVHA 144
                 569************999775554.34444444411331156778887543388889888888765.69***************999875 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.2e-06    0.0098      27     100 ..      58     122 ..      47     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.2e-06
  Methyltransf_32  27 ltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssktltk 100
                      ++v+DvG+G g L+  +a    e +  v+g+d+ +e  e a+  a + g  +   l   ++++ee+ s +++ +
       EHT99811.1  58 KKVLDVGCGGGILAESIAR---E-GAIVTGLDMGAEPLEVARLHALESG--V--TLDYVQQTVEEHAS-QHAGQ 122
                      689****************...5.999**************99999999..4..56777777776654.33333 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00011      0.11      51     145 ..      59     156 ..      32     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 .EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCC..TTTTT-EEEEEEC-SSSH....HHHHHHHCCCEEEEEE CS
        GidB  51 kviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivearaee..kqeeekydvvtsRAlasl....nelteillkllkeggl 143
                 kv+DvG G+G+  +  +iar+   +t l+      +  +    e +++ + +v++ +ee   q+  +ydvvt+  + +     + +++ + +l+k+gg+
  EHT99811.1  59 KVLDVGCGGGI--LAESIAREGAIVTGLDMGAEPLEVARLHALESGVT-LDYVQQTVEEhaSQHAGQYDVVTCMEMLEHvpdpRSVVHACAQLVKPGGE 154
                 59999999997..66678899999999998777666555555556666.6699999999999**********976544312226788899999999998 PP

                 EE CS
        GidB 144 il 145
                 ++
  EHT99811.1 155 VF 156
                 87 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019       0.2      15      64 ..      57     104 ..      43     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagle 64 
                      g++v+D+G+  g+l+  +++eg +  v+  D+ ++ple a+ ++ ++g++
       EHT99811.1  57 GKKVLDVGCGGGILAESIAREGAI--VTGLDMGAEPLEVARLHALESGVT 104
                      789*******************99..999************999888774 PP

>> DUF4390  Domain of unknown function (DUF4390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.1   4.3e+03      34      46 ..      97     109 ..      95     112 .. 0.81
   2 ?    9.9   0.0   0.00044      0.47      57      82 ..     200     225 ..     194     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.1
     DUF4390  34 daLkkGvplyfvl 46 
                  aL++Gv+l  v 
  EHT99811.1  97 HALESGVTLDYVQ 109
                 59999*9998765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00044
     DUF4390  57 wfdeevasaelryrLsYqaLtrqYrv 82 
                 w de+  +++  + L Y++Lt ++r+
  EHT99811.1 200 WVDETPLRERDMTGLHYNPLTDRFRL 225
                 99***********************9 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00048      0.51      94     187 ..      56     158 ..      43     162 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00048
        DREV  94 edkklldlGaGdGeitkrvaptfeevyatelset..mrdrlkk......kkynvlsale.lqetdvkldlilclnlldrcfdplklledirsalepngr 183
                   kk+ld+G G G +++ +a     v   ++  +     rl+       ++y   ++ e   +   ++d+++c+++l+   dp  +++   +  +p g+
  EHT99811.1  56 FGKKVLDVGCGGGILAESIAREGAIVTGLDMGAEplEVARLHAlesgvtLDYVQQTVEEhASQHAGQYDVVTCMEMLEHVPDPRSVVHACAQLVKPGGE 154
                 5688999999999999998877666544444332112334443000111455555555633445679****************9999999999898888 PP

        DREV 184 viva 187
                 v  +
  EHT99811.1 155 VFFS 158
                 8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1792.65
//
Query:       EHT99812.1  [L=761]
Description: ribonucleoside diphosphate reductase 1, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.5e-123  411.3   0.0   1.1e-120  403.7   0.0    2.5  2  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    7.3e-16   58.5   0.1    1.9e-15   57.2   0.1    1.8  1  ATP-cone         ATP cone domain
    1.1e-13   51.0   0.1    2.4e-13   49.9   0.1    1.7  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.14   8.6e+02     243     271 ..       9      37 ..       4      45 .. 0.83
   2 !  403.7   0.0  1.8e-124  1.1e-120       1     523 [.     223     731 ..     223     732 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.14
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 243 kdeegkkefdwdelkkviqlvvraLdnvi 271
                      k++  ++++d+d++++v + +++ L+nv 
       EHT99812.1   9 KRDGRQERIDLDKIHRVLDWAAEGLNNVS 37 
                      55677899*******************85 PP

  == domain 2  score: 403.7 bits;  conditional E-value: 1.8e-124
                      EEE.....BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsvedslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgGkRrGAamvylevwHpDiekf 94 
                      ssC++++  dsl+sI  t +++++++++++G+G+n+ ++Ra gs+++g e  ++G+++f+k++++ ++ ++qgG+R GAa++++ +wH ++e++
       EHT99812.1 223 SSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESL 316
                      8********************************************************************************************* PP

                      XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  95 idaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklyg...eefeeeyeeleekakikkkevkakeLfeeiaesawet 185
                      + +K +n g e nr+++++++v ++  +++++ ++kd+tLfsP++v+ l++ +    +efe+ y+++e++++i+k++vka +Lf+ +++ +++t
       EHT99812.1 317 LVLK-NNRGVEGNRVRHMDYGVQLNKMMYQRLLKGKDITLFSPSDVPGLYDAFFadqDEFERLYTKYEQDSSIRKQRVKAVDLFSLMMQERAST 409
                      ****.99*****************************************99987645466*********************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 186 gePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.........vavCnLasinLakfvkkdeegkkefdwdelkkviqlvvraLdnv 270
                      g+ ++++ D++N++++++++   ++r++NlC Ei+l++++          +a+C+L++ nL ++           ++d+l++   l+vraLd++
       EHT99812.1 410 GRIYIQNVDHCNTHSPFDAS-IAPVRQSNLCLEIALPTKPLndvndengeIALCTLSAFNLGAID----------SLDDLEELATLAVRALDAL 492
                      *****************666.6******************99**********************9..........899**************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 271 idvnkyplpeiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdefeek 364
                      +d+++yp+p+++++++ +R++G+Gv ++a +lak+g++y +  a+ +++k++e+++yy +kaS+elAke+g++p f+++ y++g+lp+d++++ 
       EHT99812.1 493 LDYQDYPIPAAQRGAMGRRTLGIGVINFAYYLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKKD 586
                      *******************************************************************************************433 PP

                      ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      x........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 365 e........kedweeLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkkiles 450
                               + dwe+Lre+ik++Glrn++++al+P++++S+i ++++gieP   ++++k +++g + +v p+                      
       EHT99812.1 587 LdaicneplHLDWETLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIKASKDGILRQVVPEY--------------------- 659
                      367777777********************************************************99998887..................... PP

                      XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 451 vqgleeipeeikrvfktaldi.dqedhikaqaaiqkwidqsiSktinl......pneatvedvkelyllAwklGlKgvty 523
                              e++k+ ++  +d+ ++  +++++ ++qk+idq+iS + n+      + +++++++ + +l+A+k G+K+++y
       EHT99812.1 660 --------ERLKDQYELLWDMpSNDGYLQLVGVMQKFIDQAISSNTNYdpsrfpNGKVPMKQLLKDLLTAYKFGVKTLYY 731
                      ........789999*******67788***************************999***********************9 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   3.1e-19   1.9e-15       2      86 .]       6      92 ..       5      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 3.1e-19
                EEE-TTS-EEE--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH.....HSS-HHHHHHHHHHHHHHHH CS
    ATP-cone  2 kViKRdGtvepfdvekIkraiekAcegseeeideiaeeveaevrkrlrdgisteeIqdlvektli.....ehpdyavaaayilyrnlrke 86
                 V+KRdG+ e +d +kI r + +A+eg +++++  +++ve++  ++++dgi+t++I++ ++k+++     ++pdy+++aa++  ++lrk+
  EHT99812.1  6 LVTKRDGRQERIDLDKIHRVLDWAAEG-LNNVS--VSQVELRSHIQFYDGIKTSDIHETIIKAAAdlisrDAPDYQYLAARLAIFHLRKK 92
                59*************************.33333..3467777788*******************************************96 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1   4.1e-17   2.4e-13       1      82 [.     141     219 ..     141     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.1e-17
  Ribonuc_red_lgN   1 kkltynalkvledrYllkde.ngeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      ++++y+a+k le +Yl +++  gei+Es q ++  vA+ l         + +++d++++fyd++s +k+++++P+++  +t++
       EHT99812.1 141 MNFSYAAVKQLEGKYLVQNRvSGEIYESAQFLYILVAACLFSGYP----RATRMDYIKRFYDAISTFKISLPTPIMSGVRTPT 219
                      589*****************666*******************776....56**************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4687.65
//
Query:       EHT99813.1  [L=376]
Description: ferritin-like ribonucleoside diphosphate reductase 1, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-49  167.7   1.6    4.9e-49  167.3   1.6    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
       0.15   12.3   0.1       0.83    9.9   0.0    2.0  2  Flavodoxin_5    Flavodoxin domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   1.6   5.5e-53   4.9e-49       7     279 .]      32     332 ..      27     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 5.5e-53
                     -SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   7 ikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHaesYsl 101
                      ky+ + +l +k+ + fW peevd+s D  d++  L ++ek+++ ++l+  +lld+i++     +ll+ + ipe +  + + a+ E+iH++sY +
      EHT99813.1  32 QKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ-ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTH 125
                     58999***************************9.6************************************************************ PP

                     HHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSC..........................HHHHHHHHHHH.HHHHCCCHHHHHHHH CS
  Ribonuc_red_sm 102 lletlvkdekekdelfnaieenpalqkkaewikkwyeskkde..........................ekfaerlvafa.llegilfysgFaail 169
                     ++  +v+d+     +f+ i +n+++ ++a+ i+k+y++  +                           +k +   ++++ +le i fy +Fa  +
      EHT99813.1 126 IIRNIVNDPS---VVFDDIVTNQQILARAQDISKYYDDLIEMtnywhllgegthqvngksitvnvralKKQLYICLMSVnALEAIRFYVSFACSF 217
                     ******6666...6**********************97653379*********************999444555555556*************** PP

                     HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS.HHHHH....HHHHHHHHHHHHHHHHHHHHHHHHTTT..BTTCHHHHHHHHHHHH CS
  Ribonuc_red_sm 170 wlkkrgllpglaeiielilrDeglHtdfagllfkelkeen.elenk....eleeeveelikeavelEkefitdalpv.ellglnkedvkqYieyv 258
                      +++r+l++g a+ii+li+rDe+lH++    + + l++ + + e k    e +ee  el+k+a   Eke+++++++  +++glnk+ ++qYiey+
      EHT99813.1 218 AFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRTGEdDPEMKeiaaECREECFELFKKAALQEKEWADYLFSGgSMIGLNKDILCQYIEYI 312
                     *****************************999999977655333224555999**********************5559**************** PP

                     HHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 259 adrllmnlgyeklYnveeenP 279
                     ++ ++++ g++  +++ ++nP
      EHT99813.1 313 TNIRMQAVGLDLPFET-RSNP 332
                     ***************9.6888 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.3e-05      0.83      64     129 ..       5      73 ..       2      77 .. 0.80
   2 ?   -0.7   0.0      0.17   1.5e+03      16      42 ..     263     288 ..     261     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.3e-05
  Flavodoxin_5  64 kFvekhreaLstkpvalfsvsltarkpek.syvrkflke..klrwqpklvgvfaGaldysklslfdrlm 129
                    F + + ++L++ ++   sv++++ +++k +  +k  ++  ++ w+p++v v + ++dy+ l+  ++++
    EHT99813.1   5 TFSQNKNDQLKEPMFFGQSVNVARFDQQKyDIFEKLIEKqlSFFWRPEEVDVSRDRIDYQALPDHEKHI 73 
                   699999***********************5223344444124559**************9998776665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.17
  Flavodoxin_5  16 eriaeelreegelvdvedvekesedle 42 
                   ++ia+e+ree+ ++  + +  ++++++
    EHT99813.1 263 KEIAAECREECFELFKKAA-LQEKEWA 288
                   789*****99877544444.2444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2913.79
//
Query:       EHT99814.1  [L=86]
Description: putative 2Fe-2S cluster-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-10   39.5   3.7    4.6e-10   39.3   3.7    1.1  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.029   14.4   0.2      0.033   14.2   0.2    1.2  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   3.7   5.2e-14   4.6e-10       6      77 ..      11      78 ..       6      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 5.2e-14
                EEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTT..SSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  6 kevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsd..etelegeeldegklrlaCqtiv 77
                +++++e+ad+   ll  +e n ++ +++ C++g Cg+C+ ++l gev  ++   +++e       + +l C++++
  EHT99814.1 11 SGTRLECADDHPNLLTMLEAN-NLCVEFQCREGYCGSCRMRLLRGEVdYAEtpLAFIEQ------GEILPCCCKA 78
                5778999999999******99.*************************753323334333......346***9997 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   3.7e-06     0.033      44      63 ..      31      50 ..      14      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.7e-06
      Fer2_3 44 ptlafrasCregiCGscava 63
                ++l  + +Creg CGsc ++
  EHT99814.1 31 NNLCVEFQCREGYCGSCRMR 50
                5678889**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 676.24
//
Query:       EHT99815.1  [L=129]
Description: putative mRNA endoribonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-29  100.9   0.0    5.1e-29  100.7   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   2.8e-33   5.1e-29       3     120 ..      13     127 ..      11     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 2.8e-33
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG.HHHHHHHHHHHSSSSTS-- CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied.faevnevyaeafdelkeaP 97 
                    +a+   + Ys a+++g+l++vsGq++++  +g   e d+++q++ a+enl+++Laaag+s++d ++vt F++d e  fa+++ev + +f+++  +P
     EHT99815.1  13 HALYERHGYSAAIRSGDLLFVSGQVGSR-TDGSP-EPDFAAQVQLAFENLRQTLAAAGCSFDDLIDVTTFHTDPETqFATIMEVKKAIFPQP-PYP 105
                    67788899******************98.35554.***************************************988***************.7** PP

                    EEEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  98 arsaveVaaLpkgakvEIeaiav 120
                    +++av+V++L+ g+++EI++ia 
     EHT99815.1 106 NWTAVGVNWLA-GFDFEIKVIAR 127
                    **********9.*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1155.27
//
Query:       EHT99816.1  [L=195]
Description: TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   53.0   2.0    2.2e-14   53.0   2.0    2.5  3  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.021   14.9   0.5      0.052   13.6   0.5    1.8  1  TetR_C_7   AefR-like transcriptional repressor, C-terminal do
      0.033   13.9   0.4        1.8    8.3   0.3    2.3  2  AphA_like  Putative AphA-like transcriptional regulator
      0.033   14.4   0.2        1.7    9.0   0.0    2.4  2  TetR_C_24  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   2.0   4.9e-18   2.2e-14       1      47 []      17      63 ..      17      63 .. 0.98
   2 ?   -1.5   0.4      0.52   2.3e+03      20      29 ..      69      78 ..      69      81 .. 0.77
   3 ?   -2.0   0.4      0.74   3.3e+03       3      10 ..     152     159 ..     151     166 .. 0.75

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 4.9e-18
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +++aAr+ fae+G++a++++e+ +++G+++galY+ F++K++Ll+a+
  EHT99816.1 17 LIAAARKAFAEKGFAAASMDELTASVGLTRGALYHNFGDKRGLLAAV 63
                799*****************************************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.52
                HHHHHHHTSS CS
      TetR_N 20 reIAkrAGvs 29
                +eIA+rA+  
  EHT99816.1 69 SEIAQRAKAR 78
                59****9875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.74
                 HHHHHHHH CS
      TetR_N   3 daArelfa 10 
                 +aA++l++
  EHT99816.1 152 EAAARLLN 159
                 89999987 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5   1.2e-05     0.052      46      90 ..     127     171 ..      87     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                 ----HHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHHHHTHHHH CS
    TetR_C_7  46 grveealaayLeaavaaGrLridDpelAAeqflgllkgelfwprl 90 
                 +   +a ++ Le++v +G L+  D+e AA+ + g   + ++w + 
  EHT99816.1 127 NACLTATQHALEEMVTSGVLKPVDVEAAARLLNGAAFTAALWVAA 171
                 566788999********************9988887777777554 PP

>> AphA_like  Putative AphA-like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3   0.00039       1.8     124     159 ..      59      92 ..      31     107 .. 0.79
   2 ?    3.6   0.0     0.011        48      50     103 ..     134     181 ..     122     189 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00039
   AphA_like 124 qidlllelvetelarlvdlraavsedGplleeWLdh 159
                    ++++ v++e+a++  +raa + d    ++ L +
  EHT99816.1  59 LLAAVVAEVDSEIAQRAKARAASAGD--SWNQLLAE 92 
                 5668999**************97755..44455555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.011
   AphA_like  50 gsslellreeGLveavdGeGmednalLaiteaGrrelqaLltanlraplsdlsk 103
                  ++le++   G++++vd   +e  a+L    +G +   aL  a  + p ++l+k
  EHT99816.1 134 QHALEEMVTSGVLKPVD---VEAAARLL---NGAAFTAALWVAASAEPQATLAK 181
                 5799************6...56666664...34444444444444555555555 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.022        99      36      80 ..      67     110 ..      49     113 .. 0.79
   2 ?    9.0   0.0   0.00037       1.7      55      91 ..     133     169 ..     125     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.022
                 S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHH CS
   TetR_C_24  36 LspehreeiralrreyerllrdlieeGvaagefedldpklaalai 80 
                 ++ e +++ +a+     + + +l++eG+a  e+ +ldp++ + ++
  EHT99816.1  67 VDSEIAQRAKARAASAGDSWNQLLAEGIAYIEM-ALDPEVQRIVL 110
                 667888889999999999**********98888.66666666555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00037
                 HHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHCHHHC- CS
   TetR_C_24  55 lrdlieeGvaagefedldpklaalailgmlnwvyrWy 91 
                  + ++ee v +g+++++d++ aa+++ g+    + W 
  EHT99816.1 133 TQHALEEMVTSGVLKPVDVEAAARLLNGAAFTAALWV 169
                 57789************************99999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1563.56
//
Query:       EHT99817.1  [L=398]
Description: putative molybdopterin-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-31  106.7   0.0    1.5e-30  105.8   0.0    1.5  1  MoCF_biosynth  Probable molybdopterin binding domain
    0.00012   22.2   0.0    0.00028   21.0   0.0    1.6  1  CinA_KH        Damage-inducible protein CinA KH domain
  ------ inclusion threshold ------
      0.048   13.2   0.1          1    8.9   0.0    2.4  2  CinA           Competence-damaged protein


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   2.4e-34   1.5e-30       2     143 ..       6     170 ..       5     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 2.4e-34
                    EEEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHHHHH CS
  MoCF_biosynth   2 vitvGdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekelegfeeafrrvs 97 
                    ++++Gde+l+g+i+Dtn+++la+ l+++g+ +  +t+v+D  + ++e+l+a   eadv+i+ GG+Gpt dD+  +a ak+ +  l+  e++++ ++
     EHT99817.1   6 MLSTGDEVLHGQIVDTNAAWLADVLFQHGLPMTSRTTVGDAMSSLVETLKARSLEADVLIVNGGLGPTTDDLSAQAAAKASGVGLVMQEAWLETME 101
                    79***********************************************5555777**************************************** PP

                    HHHCC........................TTSHGGGGGGE.EETTE.EEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  98 lkpgk........................pvgvapgailsravgkt.iigLPGspkavkealeeillpale 143
                    + + +                        pvg+a+g+ l+ +  +  +++ PG+p+++k+++e  ++p+l+
     EHT99817.1 102 AWFASrgrvmaesnrkqaeipanaemldnPVGTACGFALQLN--RCwMFFTPGVPSEFKVMVEQQIIPRLK 170
                    ***99*********************************9864..55699*****************9*997 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.6e-08   0.00028       4      59 ..     184     239 ..     183     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.6e-08
                 EEE-S--HHHHHHHHGGGS-BSSSEEEEEEETTEEEEEEE...EEHHHHHHHHH.. CS
     CinA_KH   4 LktfGigESavaekladlidrenptlAiyakegevtvRltakaaneeeaealiapv 59 
                 L tfG gES++a++l++l   en  +++  +   ++++lt  a+++ + e++ ++v
  EHT99817.1 184 LTTFGRGESDIANELEPLPLPENVLMGYRSSMPIIEIKLTGPAEQRVAMEQVWQQV 239
                 789*********************************************99998866 PP

>> CinA  Competence-damaged protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00017         1       6      36 ..     257     287 ..     252     296 .. 0.87
   2 ?    1.8   0.0     0.027   1.6e+02     116     153 ..     336     376 ..     315     378 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00017
        CinA   6 eevvkllkkkgltlatAEScTGGllaaalts 36 
                 + +++ l +++++la+ E  T+Gll  +l+s
  EHT99817.1 257 ALLARELHQRHWRLAISEQYTAGLLHWQLAS 287
                 667899*******************999876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.027
        CinA 116 yialagkggveveklefegdreeirea...avkaALellre 153
                  +al +++ +  ++++f++ r++  ++   +++ A+++lr+
  EHT99817.1 336 SVALHTPEATWGQRVKFNSGRHNLETRqkvVAMMAMNMLRR 376
                 57889999999999****99998644411145677888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2965.25
//
Query:       EHT99818.1  [L=107]
Description: uncharacterized DUF883 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-27   94.2   0.1      7e-27   93.9   0.1    1.1  1  DUF883          Bacterial protein of unknown function (DUF883
     0.0076   16.8   8.9       0.29   11.7   1.2    2.5  3  YtxH            YtxH-like protein
  ------ inclusion threshold ------
      0.014   15.3   0.2      0.015   15.2   0.2    1.1  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.023   14.8   0.3      0.027   14.6   0.3    1.1  1  DUF4449         Protein of unknown function (DUF4449)
        0.1   12.1   0.2       0.12   11.9   0.2    1.1  1  DUF2884         Protein of unknown function (DUF2884)


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.1   1.9e-30     7e-27       5      94 .]      18     107 .]      15     107 .] 0.98

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.9e-30
      DUF883   5 aeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                 ++++ l+++lee+lk+++d a++++ el+ ++e +le++++r++++++++  rak+aa +addyV+e+Pwq +Gi+a+ Gl+lGlLlarR
  EHT99818.1  18 DDIALLTETLEEVLKSSGDPADQKYIELKTKAERALEDVKSRVSQTSDSYYYRAKQAAYRADDYVHEKPWQGIGIGATAGLVLGLLLARR 107
                 89999************************************************************************************9 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.8   0.00039       1.4      28      69 ..      25      66 ..      21      72 .. 0.86
   2 !    5.7   0.6     0.006        21      26      61 ..      45      80 ..      44      85 .. 0.53
   3 !   11.7   1.2     8e-05      0.29       3      20 ..      89     106 ..      87     107 .] 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
        YtxH 28 kdlkekaddlkekakelleeakekakekaedlkekvkekade 69
                + l e ++ + + a++ + e+k ka++  ed+k+ v++++d+
  EHT99818.1 25 ETLEEVLKSSGDPADQKYIELKTKAERALEDVKSRVSQTSDS 66
                567788888889999999999999999999999999999987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.006
        YtxH 26 tRkdlkekaddlkekakelleeakekakekaedlke 61
                ++ ++ ++++d+k ++ ++ ++ + +ak+ a  + +
  EHT99818.1 45 LKTKAERALEDVKSRVSQTSDSYYYRAKQAAYRADD 80
                555555666666666666655555555555544444 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 8e-05
        YtxH   3 glliGaavGaaaglLlAP 20 
                 g+ iGa +G ++glLlA 
  EHT99818.1  89 GIGIGATAGLVLGLLLAR 106
                 899*************95 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   4.3e-06     0.015     123     179 ..       9      65 ..       1      76 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.3e-06
                     HHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXX CS
  Apolipoprotein 123 veelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanle 179
                     +e++ ++ +  +  l e+l++ ++++++ +++++ el++k+e+++e+++ r+ + ++
      EHT99818.1   9 TESFDTGYDDDIALLTETLEEVLKSSGDPADQKYIELKTKAERALEDVKSRVSQTSD 65 
                     5666777888888899***********************************999877 PP

>> DUF4449  Protein of unknown function (DUF4449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   7.6e-06     0.027      34      88 ..      23      75 ..      21      88 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.6e-06
     DUF4449 34 iqkalekqirdaleklDaelyevkqeaerakeeaksdpena.pniysryldalkkk 88
                ++ +le+ ++++   +D+   e+k++aera e+ ks  +++  ++   y++a +++
  EHT99818.1 23 LTETLEEVLKSSGDPADQKYIELKTKAERALEDVKSRVSQTsDSY---YYRAKQAA 75
                56789*******************************444441333...33333333 PP

>> DUF2884  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   3.3e-05      0.12      70     127 ..      17      74 ..       8      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
     DUF2884  70 sdgvdlAsdaldevltellgedsevaeklktkldelkarvkekfykdgdklvlgaqsl 127
                 +d ++l +++l+evl++  + +++ + +lktk ++  ++vk+++++ +d+++  a++ 
  EHT99818.1  17 DDDIALLTETLEEVLKSSGDPADQKYIELKTKAERALEDVKSRVSQTSDSYYYRAKQA 74 
                 68899999**********777888899************************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 787.00
//
Query:       EHT99819.1  [L=552]
Description: glucan biosynthesis protein, periplasmic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-179  598.4   0.0   1.2e-179  598.2   0.0    1.0  1  MdoG           Periplasmic glucan biosynthesis protein, MdoG
  ------ inclusion threshold ------
       0.05   13.8   0.3        1.1    9.5   0.0    2.5  2  EpoR_lig-bind  Erythropoietin receptor, ligand binding


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  598.2   0.0  1.4e-183  1.2e-179       1     477 []      44     533 ..      44     533 .. 0.94

  Alignments for each domain:
  == domain 1  score: 598.2 bits;  conditional E-value: 1.4e-183
                 --HHHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BT.TTSSSS-EEEEEE-BTTB-S-BEEEEE..-SS-EEE----GGGEE-TTS CS
        MdoG   1 Fsfetvkekaralaakpyaapeeelpealakldydqyrkirfrpekalw.keeklpfevqffhlgllfkepvkinev..edgkareiaydpslFdygke 96 
                 F+f+++k++a ala+kp+  p+ +lp++la+l+ ++y++i+++ +++lw +  +++++vqffh g+ fk++++++ v  ++ +arei+++++lF+y+++
  EHT99819.1  44 FDFDELKKNAAALAKKPWGGPPGPLPQTLANLTPQAYNDIQYDANHSLWnNIPNRELDVQFFHVGMGFKRRIRMFSVdsASREAREIHFRTELFNYNDA 142
                 9************************************************88899***********************644577*************999 PP

                 ...---TTTSTT--EEEEEEEEECCETTEEEEEEEEESTTEEEE--TT-----EEES-EESTT-TT--B--EEEEEEEE---TT---EEEEEEEEETTE CS
        MdoG  97 ...kkakelpkdlgfaGfrlhaplnkeevkdellvflGASYFRavgkgqqyGlsARglaidtaepkgEeFPaFtefwlerpakeaksltvyAlLdspsv 192
                    +k+ e ++dlgfaGfr  ++ +   +++++++flGASYFRav+++ qyGlsARg+ai+t ++ +EeFP+Ft+fw+e+p++e++++t yAlLd+ s+
  EHT99819.1 143 kvdTKQLEGKTDLGFAGFRAFKKPE--LARRDIVSFLGASYFRAVDDTYQYGLSARGVAINTFSNGQEEFPDFTAFWFETPKAEDTTFTCYALLDGASI 239
                 766666777889*******996655..469********************************************************************* PP

                 EEEEEEEEE-.SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEEEES--EEEE CS
        MdoG 193 tGayrfvirp.geetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfadenpkGFGL 290
                 tGay+fvi++  e++v+d+e +lf+Rkd+++lGi+p+tSmf +g+n+rr+++ ++p++hDsd L++++g+gewi RpLnnp++lq+++++denp+GFGL
  EHT99819.1 240 TGAYKFVIHCeAERVVMDIENHLFARKDIRQLGISPMTSMFSCGTNERRMCNTYHPQIHDSDRLAMWSGKGEWIARPLNNPQRLQFNAYEDENPRGFGL 338
                 *********95699************************************************************************************* PP

                 E-----GGGT--TTT-GGG--EEEEEESS---EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGGT.TSBEEEEEEEEES.. CS
        MdoG 291 lqrdrefesYqDlearYekRPslwvepkgdwgkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepkaeeplarvvatrvgkg.. 387
                 lq d++fe+YqD+  +Y+kRPslwvep g+wgkGa++L+eipt+ Et DNiv+fW+p+ep+kag++++f+Y+l+w++ +p+ +++larv atr+g g  
  EHT99819.1 339 LQLDHDFENYQDVIGWYNKRPSLWVEPVGKWGKGAINLMEIPTTGETLDNIVCFWQPAEPIKAGNAFSFSYKLYWSALPPV-QSQLARVDATRTGIGgf 436
                 ******************************************************************************999.779***********966 PP

                 .STT.-TT-...-SEEEEEEEEE-TTGGGS-T---EEEEEE-TTEEEEEEEEEETTTTEEEEEEEEEES-T..S-EEEEEEEEETTCEEEEEEEEEE CS
        MdoG 388 .eek.kekr...keskkfvvdfegealekleeeeveaevtasageivessvernpetkgwrlvfdlepede..epvelravLkkgekalsetwlyqw 477
                  e++  +++      ++f+vdf g++l++++++ +e+++t+s+g+++++++ +++  kg+r+ fd+ p+++  +pve+r++L++++++lsetwlyq+
  EHT99819.1 437 pEGWaPGEHfpdVWCRRFAVDFIGGDLQAAAPKGIEPVITVSSGTFKQVEILYVEPIKGYRILFDWYPDSDsvQPVEMRLFLRTKDETLSETWLYQY 533
                 3233533333333445***********9999989**********************************555589*********************97 PP

>> EpoR_lig-bind  Erythropoietin receptor, ligand binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.038   3.4e+02      19      40 ..     208     231 ..     199     254 .. 0.71
   2 ?    9.5   0.0   0.00012       1.1      19      46 ..     384     411 ..     378     424 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.038
                    SSSS-EEEEEEEE-SST.-TGG.E CS
  EpoR_lig-bind  19 eekedftCfweeeeeka.lstd.y 40 
                    ee+ dft fw e  +++ ++ + y
     EHT99819.1 208 EEFPDFTAFWFETPKAEdTTFTcY 231
                    567799999955544440333334 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
                    SSSS-EEEEEEEE-SST-TGGEEEEEEE CS
  EpoR_lig-bind  19 eekedftCfweeeeekalstdysllYal 46 
                    e++ +++Cfw+++e  + ++ +s++Y+l
     EHT99819.1 384 ETLDNIVCFWQPAEPIKAGNAFSFSYKL 411
                    567889***********9999*****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4545.40
//
Query:       EHT99820.1  [L=156]
Description: GNAT family acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-15   55.3   0.0    6.9e-15   55.1   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.5e-06   28.6   0.1    2.3e-06   27.9   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    7.1e-05   23.0   0.0    8.6e-05   22.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.2e-18   6.9e-15      28     125 ..      46     149 ..      13     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.2e-18
  Acetyltransf_10  28 egealllvaeeggkivGviel.rdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqee 115
                      +ge+ +l+   ++ ++ ++++ + ++     +i+++++++++rg  +g++L+ ++++ +e++ ++++  + a+ +  +fY+++GF+av++   e
       EHT99820.1  46 QGENRHLLGMAQDDLLAYARIlSPRRaetevKIGRVIISSKARGLNLGNQLMVQAIASCEQHWPGHAQFLSAQAHLAGFYQRHGFVAVSDSYLE 139
                      7888888888889999999886555578899****************************999999899************************** PP

  Acetyltransf_10 116 nGirfvpMek 125
                      + i +++M++
       EHT99820.1 140 DDIPHIDMRR 149
                      ********96 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   3.8e-10   2.3e-06       5      75 ..      28     131 ..      25     132 .. 0.56

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 3.8e-10
                     EEEEEET.......................TEEEEEEEEEEES................TCTEEEEE-GGGTTSSHHHHHHH.HTTSEEE..... CS
  Acetyltransf_7   5 vfVaedd.......................gkivGfialslld................aeitrlaVdpeyrgkGiGraLle.aaekgii..... 54 
                     vfV+e++                       +           d                  i+r+ ++ ++rg  +G +L+  a +  ++     
      EHT99820.1  28 VFVVEQQcayldvdgqdlqgenrhllgmaqD-----------DllayarilsprraeteVKIGRVIISSKARGLNLGNQLMVqA-IASCEqhwpg 110
                     6666655555555544444333222222222...........1222333344556666667777*****************624.2223333333 PP

                     ....EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  55 ....le.qlelnaekaikfYeklGFe 75 
                         l+ q++l     ++fY+++GF+
      EHT99820.1 111 haqfLSaQAHL-----AGFYQRHGFV 131
                     33445566666.....78*******8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.4e-08   8.6e-05      29     117 .]      45     130 ..      18     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
                     HSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  29 sleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                      + ++++l++   + l++++++l     ++ ++ i ++ +s+++rg +lG +L+ +++  ++++  +++ +l   + + +  ++Y+++GF
      EHT99820.1  45 LQGENRHLLGMAQDDLLAYARILSPRR-AETEVKIGRVIISSKARGLNLGNQLMVQAIASCEQHwPGHAQFL---SAQAHLAGFYQRHGF 130
                     334445555455556******999999.8999********************************96655488...557777****99**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1224.66
//
Query:       EHT99821.1  [L=301]
Description: alpha/beta hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-09   37.5   2.6    3.8e-08   33.5   2.6    2.1  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.3e-08   34.6   1.8    1.3e-07   31.3   1.8    2.2  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0037   17.2   0.2      0.013   15.4   0.2    1.9  1  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
     0.0052   16.4   0.3      0.013   15.0   0.3    1.8  1  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.014   14.6   0.2      0.063   12.5   0.0    2.0  2  Hydrolase_4    Serine aminopeptidase, S33
      0.017   14.8   0.1      0.032   13.9   0.0    1.5  2  Abhydrolase_1  alpha/beta hydrolase fold
      0.025   14.3   0.1      0.054   13.1   0.1    1.4  1  FSH1           Serine hydrolase (FSH1)
      0.084   13.0   0.0        0.2   11.8   0.0    1.6  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   2.6   1.7e-11   3.8e-08       6     209 ..      85     278 ..      80     280 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.7e-11
                    -STTTS--TTTT.HHHHHHHHHHHTSEEEEEE---TTTS-...TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_3   6 GGGfvlgsldth.dalcrelakelgavvvsvdYrlAPehp...fPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardege 97 
                    GGG+   +++ + ++ +r l++  g+++   +Yrl  eh       a++dal+al+ +++q       ++ ++++G SaG++l   +   + ++ +
     EHT99821.1  85 GGGYKRIEMAKEaWPAARWLTA-RGYTAAILRYRLPSEHWgdgNRVALQDALRALQLVKAQ-------ATGLTVLGFSAGAHLLGMAISPMGARMG 172
                    6777644444442666666655.477778899******962225689*********99999.......689************9877744444421 PP

                    --..........EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHH.. CS
  Abhydrolase_3  98 pk..........vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrd.. 181
                                v g +liyPv +le++    +   ++ +++ ll +  +            +++ + s ++++  +  pp ++v ae Dp++d  
     EHT99821.1 173 AVteaqdsapvqVDGAALIYPVITLEAP---YT---HTSTHRILLGAHPT-----------AAEEAAWS-VQNTVTAASPPFFLVQAEDDPISDph 250
                    113566778888*********9855222...22...11223333321111...........22222222.333235668**************943 PP

                    HHHHHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 182 egeayaerlraagvevelieyegmvHgf 209
                    ++  +a++ +++ v+ve+i+y+   Hgf
     EHT99821.1 251 NTLIMARACQQHHVNVEMIRYPTGGHGF 278
                    456799*********************9 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.8   5.7e-11   1.3e-07      93     206 ..     189     299 ..     100     301 .] 0.72

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.7e-11
                   EEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S..S CS
  Peptidase_S9  93 vaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegH..g 187
                   +  +pv+ + + +++t   t++      p+  ee   ++s  + +++  a+pp++l++++ D    p ++l +++a+q++++nv++  +p  gH  g
    EHT99821.1 189 ALIYPVITLEAPYTHT--STHRILLGAHPTAAEE-A-AWSVQNTVTA--ASPPFFLVQAEDDPISDPHNTLIMARACQQHHVNVEMIRYPTGGHgfG 279
                   3444555555555554..4444444444433333.2.4444445555..99*******************************************666 PP

                   TTSSHHHH.HHHHHHHHHHH CS
  Peptidase_S9 188 vgkprakv.eelarllaFlk 206
                   +gkp +   ++ ar  ++l+
    EHT99821.1 280 MGKPGTPTmAWPARYQHWLQ 299
                   67777777788888888886 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2     6e-06     0.013     111     164 ..     229     279 ..     132     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6e-06
                 GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S--- CS
      BAAT_C 111 vekakgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHlie 164
                 v  a+ p+ lv++edD +  S+ ++  +++r  ++++  +v+++ Yp +GH + 
  EHT99821.1 229 VTAASPPFFLVQAEDDPI--SDPHNTLIMARACQQHHV-NVEMIRYPTGGHGFG 279
                 5556889*********98..788888899997777776.9***********753 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3     6e-06     0.013     137     191 ..     226     280 ..     125     299 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6e-06
         DLH 137 leeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFan 191
                 ++ ++ ++ p + + +e D++ +  ++  ++ a+++++v++e+  Yp  gH+F  
  EHT99821.1 226 QNTVTAASPPFFLVQAEDDPISDPHNTLIMARACQQHHVNVEMIRYPTGGHGFGM 280
                 3344455566777778888888888888999**********************75 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.4   8.9e+02      66      89 ..     138     159 ..     125     214 .. 0.64
   2 ?   12.5   0.0   2.8e-05     0.063     181     233 ..     223     277 ..     215     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.4
  Hydrolase_4  66 vekvkeehpelplfllGhSmGGli 89 
                  ++ vk++  +  l++lG S G+ +
   EHT99821.1 138 LQLVKAQATG--LTVLGFSAGAHL 159
                  4555544433..467777777654 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.8e-05
  Hydrolase_4 181 krleeraakitlPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyHe 233
                   ++++ +++++ P++l+++e+D++ dp ++  +++++++   ++++  yp + H 
   EHT99821.1 223 WSVQNTVTAASPPFFLVQAEDDPISDPHNTLIMARACQQHhvNVEMIRYPTGGHG 277
                  467788888889******************7776666666347888889999885 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   4.8e+03      70      84 ..     143     157 ..     122     163 .. 0.69
   2 ?   13.9   0.0   1.4e-05     0.032     206     250 ..     221     276 ..     177     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                    CTTSSEEEEEETHHH CS
  Abhydrolase_1  70 lgddkltlvGhSmGG 84 
                         lt++G+S G 
     EHT99821.1 143 AQATGLTVLGFSAGA 157
                    455568899999886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.4e-05
                    C.......THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS....EEEEEEETCSS CS
  Abhydrolase_1 206 e.......lknvlaptlvisgtsDplvppkaledlaqllpk....krlvvisdagH 250
                            +++++ p +++++++Dp+ +p++   +a+++ +    ++ ++++++gH
     EHT99821.1 221 AawsvqntVTAASPPFFLVQAEDDPISDPHNTLIMARACQQhhvnVEMIRYPTGGH 276
                    03333344788999************************999899999999999999 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.4e-05     0.054      96     200 ..     140     276 ..     119     283 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
        FSH1  96 yikengpfdGiiGFSqGaalaallaslleellkea...........................shpslkfailvsGfkleepkyeeyy..eedkiqtptL 165
                  +k++     ++GFS Ga+l ++ +s +   +                              +h+s   ++l +   + e+  ++ +  + +  + p++
  EHT99821.1 140 LVKAQATGLTVLGFSAGAHLLGMAISPMGARMGAVteaqdsapvqvdgaaliypvitleapyTHTSTHRILLGAHPTAAEE-AAWSVqnTVTAASPPFF 237
                 45555556789*************999988776557778888888877777777777777766665555555444444444.333332233445999** PP

        FSH1 166 hvlGelDtvvdeerseaLaeafkns...skvlkHp.ggH 200
                  v  e+D + d++++  +a+a++++    +++ +p ggH
  EHT99821.1 238 LVQAEDDPISDPHNTLIMARACQQHhvnVEMIRYPtGGH 276
                 ***********************9988888888863566 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.9e-05       0.2      25      74 ..     224     277 ..     206     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.9e-05
  Abhydrolase_4  25 prdestakgaapvLllqnerDpaTPyegakklakalgga....vlvtvegeGHg 74 
                    +++++  + ++p  l+q+e Dp+  ++ +  +a+a ++     +++ +  +GHg
     EHT99821.1 224 SVQNTVTAASPPFFLVQAEDDPISDPHNTLIMARACQQHhvnvEMIRYPTGGHG 277
                    3334343446***********************999983333356666677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2233.07
//
Query:       EHT99822.1  [L=485]
Description: NADH:ubiquinone oxidoreductase, membrane subunit N [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-85  285.3  23.8    4.8e-85  285.3  23.8    1.8  2  Proton_antipo_M  Proton-conducting membrane transporter
    0.00015   21.3   4.2    0.00015   21.3   4.2    2.2  2  NADHdeh_related  NADH dehydrogenase I, subunit N related prot


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   2.2      0.34     3e+03     140     166 ..      55      82 ..       9      98 .. 0.50
   2 !  285.3  23.8   5.4e-89   4.8e-85       1     292 [.     122     420 ..     122     421 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.34
  Proton_antipo_M 140 a.vssneisqlllilaiismllgslval 166
                        +++      ll + + sm++++lv l
       EHT99822.1  55 VgQVGAMDVTPLLRVDAYSMFYTALVML 82 
                      2112222222233333444444444333 PP

  == domain 2  score: 285.3 bits;  conditional E-value: 5.4e-89
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal.elglnslelllllllllvgll 93 
                      +n+L++l++g+El +lpl+ Lig+++++++sleA+lk+++l++++s++LL+gi+l+y+ +g+l f  l k l + +++++ ll++l +l++gl 
       EHT99822.1 122 SNHLASLFIGIELLSLPLFGLIGYAFRQKRSLEAALKYTILSAAASSFLLFGIALIYADSGNLGFVSLGKSLtDSMIQEPLLLVGLGMLIIGLG 215
                      799*******************************************************************9999******************** PP

  Proton_antipo_M  94 vKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla..vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGy 185
                      +K+++vp+hlW+pd+y++aP+pvs++l at++k++++++i++l+++a  + s++++ +l+++a++s+l+g+l+a++q++iKrll+ySsi+hlGy
       EHT99822.1 216 FKLSLVPFHLWTPDVYQGAPAPVSTFL-ATASKIAIFGVIMRLFMYApvTDSEAVRTVLAVIAFVSILFGNLMAISQSNIKRLLGYSSIAHLGY 308
                      ***************************.9******************99999****************************************** PP

  Proton_antipo_M 186 mlialav..atqygveaaiihllthalfkallFllagsviyere..ktrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaa 275
                      +l+al++  + q ++e a ++l  + +++++ F +++ +++     +++++ +y+gL++++Pil++v++v++lslaG+P+t+gF++kf+++++ 
       EHT99822.1 309 LLVALIAvkDHQLSLETAGVYLAGYLFSSLGAFGVVSLMSSPYRgpDADSLYSYRGLFWHRPILSAVMTVMMLSLAGIPMTLGFIGKFYVIASG 402
                      ******9988999***********************99987733369*********************************************** PP

  Proton_antipo_M 276 vavslillvla.vvasvl 292
                      v+++l++l  a vv+s++
       EHT99822.1 403 VSANLWWLTGAvVVGSAI 420
                      ***********8888887 PP

>> NADHdeh_related  NADH dehydrogenase I, subunit N related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.54   4.8e+03     102     119 ..      51      68 ..      35      89 .. 0.48
   2 !   21.3   4.2   1.6e-08   0.00015      94     173 ..     126     207 ..     102     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.54
  NADHdeh_related 102 GianiGivaavkkefvle 119
                       +  +G v a+     l 
       EHT99822.1  51 SLYFVGQVGAMDVTPLLR 68 
                      444444444433333332 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.6e-08
  NADHdeh_related  94 ftlf..laliGianiGiv.aavkkefvleaafnyGlvaliatlplfggaalilastGtlsifelaklagdvlliaklllvlGv 173
                       +lf  + l+ +   G++  a++++  leaa +y +++  a+ +l+ g ali a +G l    l k  +d ++ + l l++G+
       EHT99822.1 126 ASLFigIELLSLPLFGLIgYAFRQKRSLEAALKYTILSAAASSFLLFGIALIYADSGNLGFVSLGKSLTDSMIQEPL-LLVGL 207
                      34551145788888999988*************************99*******************98884444444.44442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3339.49
//
Query:       EHT99823.1  [L=506]
Description: NADH:ubiquinone oxidoreductase, membrane subunit M [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-70  235.9  27.1      1e-69  235.0  27.1    1.4  1  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0  27.1   5.6e-74     1e-69       2     292 ..     134     431 ..     133     432 .. 0.92

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 5.6e-74
  Proton_antipo_M   2 ndLlllylglElvllplylLiglwkkk....pksleAslklflltllgsliLLlgilll....ynltgtlefeelskalelglnslelllllll 87 
                       d++l+++++E++l+p+y+Li+lw++k    + ++ A+ k+f++t ++ l++L++il+l    yn tg   f++  +  ++ ++     ll+l 
       EHT99823.1 134 IDMFLFFFFWEMMLVPMYFLIALWGHKasdgKTRITAATKFFIYTQASGLVMLIAILALvfvhYNTTGVWTFNYEQLL-KTPMSHTVEYLLMLG 226
                      6999********************988222246899********************8544455888896666666665.446667777788899 PP

  Proton_antipo_M  88 llvgllvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySsi 180
                      ++++++vK+++vplh Wlpda+ +aPt++s+ lA++l+k ++++l+r++l+l+  +s e + + ++l+ii++++g+ +a +qtdiKrl+Ay si
       EHT99823.1 227 FFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFpNASAEFAPIAMWLGIIGIFYGAWMAFSQTDIKRLIAYTSI 320
                      99***********************************************99998**************************************** PP

  Proton_antipo_M 181 shlGymlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLea 274
                      sh+G++lia+ +++q ++++a++++++h+l+ a+lF+l g++ yer +trd+r++ggL+ ++  +  + l++++++ G+P+t +F+++f+iL++
       EHT99823.1 321 SHMGFVLIAIYTGSQLAFQGAVVQMIAHGLSAAALFILCGQL-YERLHTRDMRQMGGLWSRIKWIPGLSLFFAVANLGMPGTGNFVGEFMILTG 413
                      ***************************************888.9999*************99999999999999******************** PP

  Proton_antipo_M 275 avavslillvlavvasvl 292
                      ++++ ++++v+a+++ v+
       EHT99823.1 414 SFQIVPVIIVIATFGLVF 431
                      ***********9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3716.18
//
Query:       EHT99824.1  [L=611]
Description: NADH:ubiquinone oxidoreductase, membrane subunit L [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-97  325.2  22.1    3.4e-97  325.2  22.1    2.5  3  Proton_antipo_M  Proton-conducting membrane transporter
      3e-23   81.6   2.0      3e-23   81.6   2.0    2.9  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   4.7      0.48   4.3e+03       6      56 ..       3      53 ..       1     130 [. 0.69
   2 !  325.2  22.1  3.8e-101   3.4e-97       1     293 []     133     425 ..     133     425 .. 0.99
   3 ?   -2.5   0.1      0.26   2.3e+03     234     266 ..     447     479 ..     426     483 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.48
  Proton_antipo_M  6 llylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilll 56
                     llyl     l++++lL+  ++++ ++l+A++ +  ++l++    ++g+  +
       EHT99824.1  3 LLYLTVLFPLIGFLLLAFSRGRWSENLSATVGMGSVGLAALTTVFVGFDFF 53
                     567777788999999999999999999999999999999988888887544 PP

  == domain 2  score: 325.2 bits;  conditional E-value: 3.8e-101
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal..elglnslelllllllllvgl 92 
                      a++L+l+ylg+E+v+l++ylLig+++++p++ +A++k+f++t++g+++L +++++lyn  gtl+f+e+++ +  ++++++ +l +++l+ll g+
       EHT99824.1 133 ADNLMLMYLGWEGVGLCSYLLIGFYYSNPENGKAAMKAFIITRVGDVFLAFALFILYNELGTLNFREMAELApaHFAADNHMLQWATLMLLGGA 226
                      79**********************************************************************99******************** PP

  Proton_antipo_M  93 lvKsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGy 185
                      + Ksaq+pl++Wl+da +++Ptpvsal+ Aat+v+ag++l++r++ l+   ++e+ +l+ i+++i+++l++++al+qtdiKr+lAyS++s++Gy
       EHT99824.1 227 VGKSAQLPLQTWLADA-MAGPTPVSALIhAATMVTAGGYLIARTHGLFL-LTPEVLHLVGIIGAITLVLAGFAALVQTDIKRVLAYSTMSQIGY 318
                      ****************.********************************.******************************************** PP

  Proton_antipo_M 186 mlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPpt.agFlskfliLeaavav 278
                      m++al+v   ++++aai+hl+tha+fkallFl +gsvi +++++++i+++ggL+k++P++++++lv+  +la+lP+  agF+sk++iL +a+a 
       EHT99824.1 319 MFLALGV---QAWDAAIFHLMTHAFFKALLFLSSGSVILACHHEQNIFKMGGLRKSIPLVYTCFLVGGAALAALPLItAGFYSKDEILFGALAN 409
                      *******...899**************************************************************966**************** PP

  Proton_antipo_M 279 slillvla.vvasvlt 293
                      +++ l++a +v+++lt
       EHT99824.1 410 GHLNLMVAgLVGAFLT 425
                      ********99999987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.26
  Proton_antipo_M 234 ayggLakkmPilalvllvlllslaGlPptagFl 266
                      a +g+  + P++ l++l ++++   +Pp+ag l
       EHT99824.1 447 AGKGITHHLPLIVLLVLSTFVGALITPPLAGVL 479
                      456777788888888888887777788888765 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   2.0   3.4e-27     3e-23       1      58 []      64     121 ..      64     121 .. 0.98
   2 ?   -1.8   1.5      0.39   3.5e+03      23      36 ..     458     471 ..     457     472 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 3.4e-27
  Proton_antipo_N   1 lftWlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMaddegyqRFfayls 58 
                      l+tW++vg+++i++++ lD+ls++ml vvt+v++l+h+++++YM+++egy+RFfay +
       EHT99824.1  64 LWTWIHVGNFNIQVNLTLDGLSLTMLSVVTGVGFLIHMFASWYMRGEEGYSRFFAYTN 121
                      7*******************************************************86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.39
  Proton_antipo_N  23 almllvvtfvsllv 36 
                      ++ l++ tfv++l+
       EHT99824.1 458 IVLLVLSTFVGALI 471
                      578999******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4383.58
//
Query:       EHT99825.1  [L=100]
Description: NADH:ubiquinone oxidoreductase, membrane subunit K [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-20   72.0   7.8      3e-20   71.8   7.8    1.0  1  Oxidored_q2      NADH-ubiquinone/plastoquinone oxidoreductase
     0.0087   15.5   0.4       0.02   14.3   0.4    1.6  1  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
  ------ inclusion threshold ------
       0.22   11.6   1.2       0.24   11.5   1.2    1.2  1  DUF5392          Family of unknown function (DUF5392)


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   7.8   5.1e-24     3e-20       3     103 ..       8      95 ..       6      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 5.1e-24
                  HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC.............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-BC CS
  Oxidored_q2   3 llliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvitnpatefadplpqalvLtaivigaaetavgLallvrlyreygtddv 100
                  l+l+a+lf++Gl  ++lrrnll +li+le++ na+ l+lv+ag+++             +   +q++ ++ai ++aae+++gLall++lyr ++t+++
   EHT99825.1   8 LILAAVLFVLGLTSLVLRRNLLFMLISLEIMINAAALALVVAGSYW-------------GEADGQVMYILAISLAAAEASIGLALLLQLYRRRQTLNI 92 
                  6899******************************************.............9*************************************9 PP

                  CG- CS
  Oxidored_q2 101 qel 103
                  + +
   EHT99825.1  93 DTV 95 
                  976 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.4   3.3e-06      0.02      16      32 ..       6      22 ..       4      26 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-06
                     HHHHHHHHHHHHHHHHH CS
  ATP1G1_PLM_MAT8 16 gGLifAglLfivGilii 32
                      GLi+A++Lf++G++ +
       EHT99825.1  6 HGLILAAVLFVLGLTSL 22
                     5************9865 PP

>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   4.1e-05      0.24      23      78 ..      23      82 ..      10      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.1e-05
     DUF5392 23 llkKsskysfislPLll.vslinlil...lllkaeleedsliaiilyallgAlGlAlfkE 78
                +l++ + +++isl +++ ++++ l++    + +a+ +   ++ai l+a+ + +GlAl+  
  EHT99825.1 23 VLRRNLLFMLISLEIMInAAALALVVagsYWGEADGQVMYILAISLAAAEASIGLALLLQ 82
                5889999*****987652556666542225677777777889999***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 788.00
//
Query:       EHT99826.1  [L=183]
Description: NADH:ubiquinone oxidoreductase, membrane subunit J [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-35  121.9  16.3      2e-35  121.6  16.3    1.1  1  Oxidored_q3      NADH-ubiquinone/plastoquinone oxidoreductase
  ------ inclusion threshold ------
      0.023   15.1   3.6      0.023   15.1   3.6    2.2  2  DUF4199          Protein of unknown function (DUF4199)
       0.15   12.2   6.6       0.25   11.5   5.3    2.1  2  DUF4079          Protein of unknown function (DUF4079)
       0.32   11.3   9.2       0.14   12.5   5.9    2.0  2  DUF5379          Family of unknown function (DUF5379)
        2.4    8.2  10.0       0.15   12.1   4.4    2.0  2  DUF2109          Predicted membrane protein (DUF2109)
        9.7    6.3  12.2       0.12   12.4   1.7    2.4  3  MpPF26           M penetrans paralogue family 26


Domain annotation for each model (and alignments):
>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6  16.3   6.6e-39     2e-35       3     144 .]      17     158 ..      15     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 6.6e-39
                  HHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHS...STTS----TTCHHHHHHHHHHHHHHHHHHHTT--... CS
  Oxidored_q3   3 llvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimll...esaeeeepeslsrslalaalligllllallllllles 97 
                  l vit++npv++ l+Li+s+++vag+f+ lga+F ++l i+vY+GAi+vlf+Fv+m+l   +  +++e+e+ls+sl+++  l++lllla+++++++++
   EHT99826.1  17 LRVITHTNPVHALLYLIVSLLSVAGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLnlgKATQKQEREWLSPSLWIGPGLVSLLLLAVMIYAIMTA 114
                  789*********************************************************9778899999************************9863 PP

                  ...--------TT-HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHC CS
  Oxidored_q3  98 sssavdaqvadvsnieaigsllftkyllpfelasllLLvaligaivl 144
                  +    +    +  + +a+g +lf+ y+l++elas+lLL++l++a +l
   EHT99826.1 115 HD---QGIDGKIIDAKAVGISLFGPYVLAVELASMLLLAGLVVAFHL 158
                  33...34455677******************************9875 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   4.2     0.095   2.9e+02       3      55 ..       4      49 ..       2      54 .. 0.65
   2 ?   15.1   3.6   7.7e-06     0.023       4      80 ..      58     140 ..      58     158 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.095
     DUF4199  3 Glilglvwilifll.ilyllglhqilstgpllgllallllllvpflvylalkky 55
                +++l  +++++++l +  ++++      +p+ +ll+l+ +ll++++v+++l +y
  EHT99826.1  4 AFYLCGLVAVVTTLrV--ITHT------NPVHALLYLIVSLLSVAGVFFSLGAY 49
                5666666666666433..3333......37778888888888888898887755 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 7.7e-06
     DUF4199   4 lilglvwilifll.ilyllglh.qilstg.pllglla....llllllvpflvylalkkyrkknlgG.fisfgqafgfgflislva 80 
                 +++g++++l++++ +++ lg+  q ++ + +l   l+    l++lll  +++++a++   ++  +G  i  +   +  f+++++a
  EHT99826.1  58 VYAGAIMVLFVFVvMMLNLGKAtQ-KQEReWLSPSLWigpgLVSLLL-LAVMIYAIMTAHDQGIDGkIIDAKAVGISLFGPYVLA 140
                 6899********888888888644.4444366666667775555555.6667777774445555883444444444445566555 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.3   8.4e-05      0.25      53     109 ..      60     116 ..      20     119 .. 0.88
   2 ?   -1.8   0.0       1.1   3.2e+03      17      23 ..     148     154 ..     132     180 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.4e-05
     DUF4079  53 lgslllllvvlgaigglvllylrrgklfpssHlyaGlavvvLlalsaalvpeiqkgk 109
                 +g++++l+v+++++  l     ++++++ s+ l++G ++v Ll+l++++   +  ++
  EHT99826.1  60 AGAIMVLFVFVVMMLNLGKATQKQEREWLSPSLWIGPGLVSLLLLAVMIYAIMTAHD 116
                 68888888888888888888889999**********************998887665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
     DUF4079  17 lgavayl 23 
                 l a++++
  EHT99826.1 148 LLAGLVV 154
                 1111222 PP

>> DUF5379  Family of unknown function (DUF5379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.9   4.6e-05      0.14      12      85 ..      38     111 ..      27     116 .. 0.86
   2 ?   -0.7   0.1      0.57   1.7e+03      17      46 ..     133     152 ..     118     164 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
     DUF5379  12 aiggiifgylanyvytlglgllsglatllflfiglvilghlsakvlgeesltqkqwlgsgvlpfflvaivvwil 85 
                 ++ g+ f + a +  +l + +++g   +lf+f+ +++    +++   +e l+   w+g g+++ +l+a++++ +
  EHT99826.1  38 SVAGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGKATQKQEREWLSPSLWIGPGLVSLLLLAVMIYAI 111
                 68899999999999999999999*99999999998887666777889********************9998865 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.57
     DUF5379  17 ifgylanyvytlglgllsglatllflfigl 46 
                 +fg +   v  + + ll+          gl
  EHT99826.1 133 LFGPYVLAVELASMLLLA----------GL 152
                 444322222222222222..........22 PP

>> DUF2109  Predicted membrane protein (DUF2109)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.4     5e-05      0.15       3      40 ..       6      43 ..       4      75 .. 0.82
   2 ?   -2.8   0.3       2.2   6.6e+03      26      36 ..     101     111 ..      98     114 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
     DUF2109  3 liigiiailaairilleknraekLlylnvlnFaiaali 40
                +++g++a++ ++r++   n ++ Llyl v   ++a++ 
  EHT99826.1  6 YLCGLVAVVTTLRVITHTNPVHALLYLIVSLLSVAGVF 43
                68***************************999999975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.2
     DUF2109  26 LlylnvlnFai 36 
                 Ll l v+ +ai
  EHT99826.1 101 LLLLAVMIYAI 111
                 66677777766 PP

>> MpPF26  M penetrans paralogue family 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.5      0.11   3.3e+02      10      34 ..      26      50 ..      13      55 .. 0.78
   2 ?   12.4   1.7   4.1e-05      0.12      16      75 ..      56     113 ..      51     116 .. 0.80
   3 ?   -3.3   0.1       3.1   9.4e+03     101     111 ..     143     153 ..     130     158 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
      MpPF26 10 klsltiiilyllatvlllvsllayi 34
                +++l+++i  ll ++ +++sl ay 
  EHT99826.1 26 VHALLYLIVSLLSVAGVFFSLGAYF 50
                5788888888888888888888886 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.1e-05
      MpPF26  16 iilyllatvlllvsllayivllskskllskeyeeesslleaelligvllillidifyivn 75 
                 ii y  a+++l+v+++++++l  + +  + e  + s+ l +  ++  ll+l++ i++i++
  EHT99826.1  56 IIVYAGAIMVLFVFVVMMLNLGKATQKQERE--WLSPSLWIGPGLVSLLLLAVMIYAIMT 113
                 899*******************988877766..777777776777777777888887765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.1
      MpPF26 101 lhtvLliigif 111
                 l ++Ll+ g++
  EHT99826.1 143 LASMLLLAGLV 153
                 33344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 1541.69
//
Query:       EHT99827.1  [L=180]
Description: NADH:ubiquinone oxidoreductase, chain I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-14   51.3  16.9      7e-09   35.1   0.8    2.2  2  Fer4             4Fe-4S binding domain
    8.8e-12   45.4  10.7    1.4e-11   44.8  10.7    1.3  1  Fer4_7           4Fe-4S dicluster domain
    3.8e-10   40.6   5.3    0.00017   22.4   0.0    2.3  2  Fer4_16          4Fe-4S double cluster binding domain
    9.8e-10   38.4   8.7    0.00016   21.7   4.7    2.2  2  Fer4_21          4Fe-4S dicluster domain
    1.5e-09   37.8  19.2    1.9e-06   27.9  12.1    1.6  2  Fer4_10          4Fe-4S dicluster domain
    3.7e-09   36.9   1.3     0.0021   18.4   0.0    2.2  2  Fer4_8           4Fe-4S dicluster domain
    7.6e-08   32.4  10.2    2.8e-07   30.6  10.7    1.7  2  Fer4_9           4Fe-4S dicluster domain
    1.4e-07   31.9   5.0     0.0051   17.3   0.6    2.3  2  Fer4_17          4Fe-4S dicluster domain
    7.4e-06   25.7  12.7       0.01   15.8   0.9    2.4  2  Fer4_2           4Fe-4S binding domain
    5.3e-05   23.1  17.3     0.0046   17.0   0.9    2.3  2  Fer4_6           4Fe-4S binding domain
    0.00074   19.8  13.1      0.068   13.7   1.2    2.3  2  Fer4_4           4Fe-4S binding domain
     0.0087   16.9   3.6     0.0087   16.9   3.6    2.3  2  Fer4_3           4Fe-4S binding domain
  ------ inclusion threshold ------
      0.064   13.8  12.2       0.53   10.9   1.4    2.6  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
      0.073   13.2   5.4        0.4   10.8   1.6    2.2  2  ETF_QO           Electron transfer flavoprotein-ubiquinone ox
        0.7   10.1  11.5         87    3.4  11.7    2.2  1  Fer4_18          4Fe-4S dicluster domain
       0.82   10.6  14.4        3.4    8.6   2.3    2.2  3  Fer4_22          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   9.2   1.8e-07    0.0002       6      24 .]      58      76 ..      56      76 .. 0.94
   2 !   35.1   0.8   6.3e-12     7e-09       2      24 .]      93     115 ..      92     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
                TTSSS-THHHHHSTTTEEE CS
        Fer4  6 ekCigCGaCvevCPvgAIt 24
                e+C++C++C+ +CPvg+I+
  EHT99827.1 58 ERCVACNLCAVACPVGCIS 76
                9****************96 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 6.3e-12
                 EEETTTSSS-THHHHHSTTTEEE CS
        Fer4   2 videekCigCGaCvevCPvgAIt 24 
                  i+ ++Ci+CG+C+e+CP+ AI+
  EHT99827.1  93 RINFSRCIFCGLCEEACPTTAIQ 115
                 599****************9995 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8  10.7   1.3e-14   1.4e-11       1      52 []      59     113 ..      59     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.3e-14
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt...ekveidpekClgCgaCvavCPtga 52 
                 rC+ C+ C++aCpv++i+l+++e ++g+   e  +i+ ++C++Cg C+++CPt a
  EHT99827.1  59 RCVACNLCAVACPVGCISLQKAETKDGRwypEFFRINFSRCIFCGLCEEACPTTA 113
                 8*********************99999766555699****************986 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.1     3e-06    0.0034       1      24 [.      59      82 ..      59      89 .. 0.85
   2 !   22.4   0.0   1.5e-07   0.00017       1      25 [.      98     122 ..      98     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3e-06
     Fer4_16  1 rCgtCgkCaevCPtnaikekkeke 24
                rC+ C+ Ca +CP+++i+ +k+++
  EHT99827.1 59 RCVACNLCAVACPVGCISLQKAET 82
                6*****************995544 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.5e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekei 25 
                 rC+ Cg C e+CPt ai+ + ++e+
  EHT99827.1  98 RCIFCGLCEEACPTTAIQLTPDFEL 122
                 6*****************9944443 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   4.7   1.4e-07   0.00016      38      58 ..      57      76 ..      48      77 .. 0.90
   2 !   18.6   0.1   1.3e-06    0.0015       2      25 ..      93     116 ..      92     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.4e-07
     Fer4_21 38 edeCvGCnlCssvCPvedcie 58
                +++Cv+CnlC+  CPv +ci+
  EHT99827.1 57 AERCVACNLCAVACPV-GCIS 76
                689************9.***7 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.3e-06
     Fer4_21   2 ridedkCigCgkCliaCedtshqa 25 
                 ri+ ++Ci Cg+C  aC++t++q 
  EHT99827.1  93 RINFSRCIFCGLCEEACPTTAIQL 116
                 688899************888774 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9  12.1   1.7e-09   1.9e-06       7      56 .]      58     110 ..      55     110 .. 0.96
   2 !   21.0   0.6   2.3e-07   0.00026       3      24 ..      93     126 ..      91     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.7e-09
     Fer4_10   7 dtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++C+ C+ C  aCP+     ++ ++k+ +++ e  r++ ++C++cg C eaCP
  EHT99827.1  58 ERCVACNLCAVACPVGCislQKAETKDGRWYPEFFRINFSRCIFCGLCEEACP 110
                 79*************88999999*****************************9 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 2.3e-07
     Fer4_10   3 vidddtCirCgkCvkaCPadl............t 24 
                 +i+ ++Ci Cg C +aCP+++            +
  EHT99827.1  93 RINFSRCIFCGLCEEACPTTAiqltpdfelgefK 126
                 688999************9666555555555551 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   3.2e-06    0.0036      45      64 ..      54      73 ..      20      84 .. 0.71
   2 !   18.4   0.0   1.9e-06    0.0021       2      20 ..      96     114 ..      95     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.2e-06
      Fer4_8 45 eealwsCttcgaCtevCpvg 64
                 +++++C++c+ C+++Cpvg
  EHT99827.1 54 PDGAERCVACNLCAVACPVG 73
                57788888888888888886 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.9e-06
      Fer4_8   2 lekCieCgaCqsaCpvlrr 20 
                 +++Ci Cg+C++aCp+   
  EHT99827.1  96 FSRCIFCGLCEEACPTTAI 114
                 689***********95544 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   4.5   0.00011      0.12      33      51 .]      53      75 ..      32      75 .. 0.75
   2 !   30.6  10.7   2.5e-10   2.8e-07       1      51 []      59     114 ..      59     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      Fer4_9 33 e....eaCigCgaCveaCpkgai 51
                +    e+C+ C+ C+ aCp g+i
  EHT99827.1 53 DpdgaERCVACNLCAVACPVGCI 75
                1334589************9987 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 2.5e-10
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase......eaCigCgaCveaCpkgai 51 
                 +C+ C+ C  aCp g ++ ++ae+k+  r++ e      ++Ci+Cg C+eaCp++ai
  EHT99827.1  59 RCVACNLCAVACPVGCISLQKAETKDG-RWYPEffrinfSRCIFCGLCEEACPTTAI 114
                 6******************99999977.4555689*******************987 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.6   4.6e-06    0.0051      38      58 ..      52      72 ..      24      74 .. 0.77
   2 !   16.5   0.3   8.1e-06    0.0091      42      58 ..      95     111 ..      76     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.6e-06
     Fer4_17 38 ekeekaslCieCgeCerkCPq 58
                 + + a++C+ C++C+ +CP 
  EHT99827.1 52 RDPDGAERCVACNLCAVACPV 72
                345799**************6 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 8.1e-06
     Fer4_17  42 kaslCieCgeCerkCPq 58 
                 ++s+Ci Cg+Ce++CP 
  EHT99827.1  95 NFSRCIFCGLCEEACPT 111
                 789*************6 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   4.9   2.6e-05     0.029       7      21 ..      57      71 ..      52      72 .. 0.89
   2 !   15.8   0.9   9.4e-06      0.01       4      22 .]      93     111 ..      90     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
      Fer4_2  7 tdrCigCgaCvsaCP 21
                ++rC++C+ C  aCP
  EHT99827.1 57 AERCVACNLCAVACP 71
                68************* PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.4e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                  ++  rCi Cg C  aCP+
  EHT99827.1  93 RINFSRCIFCGLCEEACPT 111
                 58899*************7 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   9.5   0.00034      0.39       7      24 .]      58      75 ..      57      75 .. 0.91
   2 !   17.0   0.9   4.1e-06    0.0046       7      23 ..      97     113 ..      91     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
      Fer4_6  7 dkCigCgdCvrvCPegai 24
                ++C+ C+ C+++CP g i
  EHT99827.1 58 ERCVACNLCAVACPVGCI 75
                89************9976 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.1e-06
      Fer4_6   7 dkCigCgdCvrvCPega 23 
                 ++Ci Cg C+ +CP+ a
  EHT99827.1  97 SRCIFCGLCEEACPTTA 113
                 89************855 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   4.8   0.00041      0.46       2      17 .]      58      73 ..      57      78 .. 0.93
   2 !   13.7   1.2   6.1e-05     0.068       2      16 ..      97     111 ..      96     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
      Fer4_4  2 erCigCgsCvaaCPqg 17
                erC+ C  C  aCP+g
  EHT99827.1 58 ERCVACNLCAVACPVG 73
                9*************75 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.1e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 +rCi Cg C+ aCP+
  EHT99827.1  97 SRCIFCGLCEEACPT 111
                 69************6 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.8     0.046        51       1      14 [.      60      73 ..      60      74 .. 0.94
   2 !   16.9   3.6   7.8e-06    0.0087       1      13 [.      99     111 ..      99     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.046
      Fer4_3  1 CtgCgaCvevCPvg 14
                C+ C++C ++CPvg
  EHT99827.1 60 CVACNLCAVACPVG 73
                999**********9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 7.8e-06
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ Cg+C+e+CP+
  EHT99827.1  99 CIFCGLCEEACPT 111
                 ************8 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.6    0.0055       6.1       4      17 ..      58      71 ..      49      76 .. 0.91
   2 ?   10.9   1.4   0.00047      0.53       2      18 ..      95     111 ..      94     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0055
     Fer4_13  4 dtCiacgaCvelaP 17
                ++C+ac++C+ ++P
  EHT99827.1 58 ERCVACNLCAVACP 71
                78********9999 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00047
     Fer4_13   2 DrdtCiacgaCvelaPd 18 
                 + ++Ci cg+C e++P 
  EHT99827.1  95 NFSRCIFCGLCEEACPT 111
                 5679************7 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.0     0.011        13      72     103 ..      57      88 ..      52      89 .. 0.91
   2 ?   10.8   1.6   0.00036       0.4      50      93 ..      70     117 ..      69     123 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
                 CCC--S--HHHHH-TT--EEE---STT-C--- CS
      ETF_QO  72 aqnCvhCktCdikdpsqniewvvPeGggGPky 103
                 a+ Cv C+ C +  p   i+ +  e  +G  y
  EHT99827.1  57 AERCVACNLCAVACPVGCISLQKAETKDGRWY 88 
                 678*******************9999999777 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00036
                 -TTS-EEEEETTT....TSSEEEEE-CCC--S--HHHHH-TT--EEE- CS
      ETF_QO  50 CPagvyeivedee....akekklqinaqnCvhCktCdikdpsqniewv 93 
                 CP g   + ++e        + ++in + C+ C  C+   p+  i+ +
  EHT99827.1  70 CPVGCISLQKAETkdgrWYPEFFRINFSRCIFCGLCEEACPTTAIQLT 117
                 88888777776641111234679****************999999865 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  11.7     0.078        87      54      97 ..      53     111 ..      45     117 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.078
     Fer4_18  54 kekgagdcidcescvkvcPtg.i.....dirkG......lql...eciscllcidacdk 97 
                   +ga  c++c+ c   cP+g i     + ++G      +++    ci c+lc +ac +
  EHT99827.1  53 DPDGAERCVACNLCAVACPVGcIslqkaETKDGrwypefFRInfsRCIFCGLCEEACPT 111
                 5577889************9843222224456633333322233359999999999965 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.7    0.0096        11       1      23 [.      59      80 ..      59      95 .. 0.74
   2 ?    8.3   2.3    0.0038       4.2       1      14 [.      98     111 ..      78     114 .. 0.70
   3 ?    8.6   2.3     0.003       3.4       1      17 [.      98     114 ..      98     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0096
     Fer4_22  1 rClsCgaCtlvCptCsCfdvede 23
                rC++C+ C+++Cp   C+++++ 
  EHT99827.1 59 RCVACNLCAVACPVG-CISLQKA 80
                7************73.4444443 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0038
     Fer4_22   1 rClsCgaCtlvCpt 14 
                 rC+ Cg C  +Cpt
  EHT99827.1  98 RCIFCGLCEEACPT 111
                 45555555555555 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.003
     Fer4_22   1 rClsCgaCtlvCptCsC 17 
                 rC+ Cg C  +Cpt   
  EHT99827.1  98 RCIFCGLCEEACPTTAI 114
                 799**********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1276.65
//
Query:       EHT99828.1  [L=325]
Description: NADH:ubiquinone oxidoreductase, membrane subunit H [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-118  394.8  18.6   2.8e-118  394.6  18.6    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.6  18.6  1.6e-122  2.8e-118       3     298 ..      18     316 ..      16     317 .. 0.98

  Alignments for each domain:
  == domain 1  score: 394.6 bits;  conditional E-value: 1.6e-122
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SSTTTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS..SSS--TTHH CS
      NADHdh   3 lllllvvlllvvalltlleRkvlAriqdRlGPnrvGplGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge..vladlnvgl 99 
                 +l++l+v++ + a++ ++eR++l+ +q+R+GPnrvG+ G lq++aD++K+++Ked++p  +d+++f+lapv+a+++ llafa++P+++  v++dln+gl
  EHT99828.1  18 ALVILLVVVACGAFMSFAERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPPFTDRFIFTLAPVIAFVSLLLAFAIVPVSPtwVVIDLNIGL 116
                 6788888899999**************************************************************************889********* PP

                 HHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT-CCCCHHHHHHHHHHHHHHCCTCTTBTTT CS
      NADHdh 100 llilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeeiwfillqllafiifliallaetnraPFDlp 198
                 l++l+++ l+vy++l+aGw+sn+kY+llGa+R++aq++syEv+lglsl++vv  ags+++++iv++q++ w+i+ q+++f++f+ia +a ++r+PFD p
  EHT99828.1 117 LFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNSQTHLWNIIPQFFGFVTFCIAGVAVCHRHPFDQP 215
                 ************************************************************************9999*********************** PP

                 TSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT.SS-HCCS.HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTCHHHHHHHHH CS
      NADHdh 199 eaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFlgGwllpfs.gllwfllKvllllflfiwiratlpRlRydqlmklgwkvllplalanll 296
                 eae+EL+ G+h+EY+gmkf+lff++ey+++++vsal+v+lF+gGw++pf  +++wf+lK+++++++fi+ira+lpR Rydq++++gwkv+lpl+l+nll
  EHT99828.1 216 EAEQELADGYHIEYAGMKFGLFFVGEYVAITTVSALIVTLFFGGWHGPFLpPFIWFALKTAFFMMMFILIRAALPRPRYDQVLSFGWKVCLPLTLLNLL 314
                 *************************************************99***********************************************9 PP

                 HH CS
      NADHdh 297 lt 298
                 +t
  EHT99828.1 315 AT 316
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2209.83
//
Query:       EHT99829.1  [L=907]
Description: NADH:ubiquinone oxidoreductase, chain G [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-15   54.9   0.2    1.1e-14   53.6   0.2    1.7  1  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    5.1e-12   45.7   3.6    7.7e-11   41.9   0.1    3.4  3  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    1.2e-10   41.3   0.2    3.1e-10   39.9   0.2    1.8  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
      2e-09   37.3   1.3    1.2e-08   34.8   0.1    2.9  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
    7.5e-09   35.0   0.0    4.9e-08   32.3   0.0    2.0  2  Molybdopterin    Molybdopterin oxidoreductase
    3.6e-08   33.4   0.0    9.5e-08   32.1   0.0    1.7  1  Molydop_binding  Molydopterin dinucleotide binding domain
     0.0066   16.2   2.8      0.053   13.3   1.8    2.5  2  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
  ------ inclusion threshold ------
        3.6    7.8   9.2       0.25   11.5   0.6    3.2  3  Fer4_6           4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   5.1e-18   1.1e-14       1      37 [.      88     124 ..      88     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 5.1e-18
  NADH-G_4Fe-4S_3   1 RktilellLanHpldCltCdknGnCeLQdlayelgve 37 
                      R  ++e+l++nHp+dC++C+ +GnC+LQd++ + g++
       EHT99829.1  88 RESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHS 124
                      889****************************999975 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   3.4e-14   7.7e-11       5      78 ..       3      78 ..       1      82 [. 0.87
   2 ?   -0.9   0.1      0.75   1.7e+03      35      62 ..     212     239 ..     207     242 .. 0.78
   3 ?    2.7   0.1      0.06   1.4e+02      16      49 ..     511     545 ..     504     549 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 3.4e-14
      Fer2_4  5 tltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVev.....egepn.vracstpvedGlkve 78
                t+++DGke+ v   d +++A+l  g d+p  c++      l+++g+Cr+C V+      +++++ v +c+tp+ dG  ++
  EHT99829.1  3 TIHVDGKEYDVNGADNLLQACLSLGLDIPYFCWH----PALGSVGACRQCAVKQfqnaeDTRGRlVMSCMTPASDGTFIS 78
                99********************************....99*************9655443555526**********7665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.75
      Fer2_4  35 sckygrprgelcaggeCrnClVevegep 62 
                 s  y+r+ ++  a + C++C V  ++ p
  EHT99829.1 212 SERYNRKWDMQFAPSICQQCSVGCNTSP 239
                 6677777777788899******998766 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.06
      Fer2_4  16 peGdtvasAllangvdvp.rsckygrprgelcagg 49 
                 ++   va+Al a g+dv  ++ + ++++  l+ +g
  EHT99829.1 511 EAAANVAKALKARGADVGiTLLAGHANSMGLGLMG 545
                 56678************999***999999999887 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.2   1.4e-13   3.1e-10       1      54 [.     221     274 ..     221     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.4e-13
                     SEEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   1 ekvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllervy 54 
                     +++++++C+ C+vgC+    +++g+ +++e   ++ vn+  lC +Gr+++ +v+
      EHT99829.1 221 MQFAPSICQQCSVGCNTSPGERYGELRRIENRYNGSVNHYFLCDRGRFGYGYVN 274
                     67899***********************************************98 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   5.3e-12   1.2e-08       1      77 [.       4      71 ..       4      72 .. 0.80
   2 ?   -1.0   0.1      0.77   1.7e+03       4      41 ..      81     113 ..      78     114 .. 0.65

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 5.3e-12
                EETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  1 itidgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                i++dgk  e++v+  ++ ll+a+ +  g+dipy+C +      g+C+ C+v+           +   e   +g l+++C+t++
  EHT99829.1  4 IHVDGK--EYDVNGADN-LLQACLSL-GLDIPYFCWHpalgsvGACRQCAVKQ----------FQNAE-DTRGRLVMSCMTPA 71
                688999..677756666.*******9.**************9999******92..........22222.2456789****987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.77
                 TTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SS CS
        Fer2   4 dgkevevevadgettlldaaeenggidipysCgggg.Cg 41 
                 dg+  e+     e+++   + +n+  d p  C++gg C 
  EHT99829.1  81 DGEAKEFR----ESVVEWLM-TNHPHDCP-VCEEGGnCH 113
                 56666665....46344444.45588888.899999996 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.16   3.6e+02      56     152 ..     322     411 ..     306     431 .. 0.61
   2 !   32.3   0.0   2.2e-11   4.9e-08     324     417 ..     546     638 ..     507     642 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
                    HHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB CS
  Molybdopterin  56 meslaslkkllsllggknlsfydwyadlppasaqqtigsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpry 151
                     es ++l++l+ +   +++   +++a+l+       +   +r+  +++ +l ++e  d++++ G ++ +    + a   ++a k+ka+ ++  +++
     EHT99829.1 322 IESNFALRELVGAENFSTGMPAGEQARLE------LLLKVLREGGIYTPSLREIESYDAVLVLGEDLTQVGARV-ALSVRQAVKGKAREMAAAQKV 410
                    55555555554444444444444444443......34555677888899999***************9998888.444444555555444444444 PP

                    - CS
  Molybdopterin 152 a 152
                    a
     EHT99829.1 411 A 411
                    4 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2.2e-11
                    -ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-ST CS
  Molybdopterin 324 rnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppg 417
                    +n++ ++ + l++++ +++ +l  n+  +ha + +v  al+ + +v+v+d + t t+++a ++L aa++ E +++++n egr q++ q+ +p++
     EHT99829.1 546 GNTLDQALEQLQNGEADAVVVLE-NDLYRHAPKAQVDAALNHAANVIVVDHQRTATVEKAGLVLSAASFAESDGTSINHEGRAQRFFQVYDPAY 638
                    56666777788888999997887.*******************************************************************985 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   4.2e-11   9.5e-08      13      82 ..     821     889 ..     812     905 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 4.2e-11
                      TTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC CS
  Molydop_binding  13 hsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe 82 
                        +t+  pv ++++ +p ++ +npedAa+lG+++G  Ve++ +  +v+++++ + +++ G+v +p g + 
       EHT99829.1 821 EEMTQRAPVIQQRMSAP-TLVLNPEDAAKLGVNNGAAVELTCAGETVRLPVRFSASLQAGQVGLPLGMPG 889
                      45777788888888888.***********************************************99876 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.18     4e+02      71      90 ..     365     384 ..     300     402 .. 0.76
   2 !   13.3   1.8   2.4e-05     0.053       3     114 ..     485     598 ..     483     608 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.18
                   HHHHHHH-SEEEEES-SSST CS
  TPP_enzyme_M  71 anealeeaDlvlalGarfdd 90 
                     + +e+ D vl+lG ++++
    EHT99829.1 365 SLREIESYDAVLVLGEDLTQ 384
                   44556999*******88876 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.4e-05
                   HHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH.....-SEEEEES-SSSTCCCT CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealee.....aDlvlalGarfddirtt 94 
                    ++++l+ ak+p+i+ G    +s   e+++++a++l++  ++      ++   h +++g lgl+g ++ ++ale+     aD v++l  ++  +   
    EHT99829.1 485 VVVQALAGAKKPLIISGVHSGSSAMIEAAANVAKALKARGADVG--ITLL-AGHANSMG-LGLMGGNTLDQALEQlqngeADAVVVLENDLYRHAPK 577
                   689***************99999999999988888888766643..2222.35555555.4444444444444444445699999999888665555 PP

                   TTTT.TTTTT-.EEEEEESSCC CS
  TPP_enzyme_M  95 gsep.efapea.kiihididpa 114
                   ++ + + + +a ++i +d +++
    EHT99829.1 578 AQVDaALN-HAaNVIVVDHQRT 598
                   56663444.4449999998764 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   0.00011      0.25       2      17 ..     144     159 ..     143     160 .. 0.86
   2 ?    0.2   0.1      0.42   9.5e+02      16      23 ..     198     205 ..     198     206 .. 0.83
   3 ?   -1.3   0.6       1.2   2.7e+03       4      13 ..     223     232 ..     221     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      Fer4_6   2 veidpdkCigCgdCvr 17 
                 + +  ++Ci C++Cvr
  EHT99829.1 144 ISHEMNRCIACYRCVR 159
                 567789********97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
      Fer4_6  16 vrvCPega 23 
                 v +CP+g+
  EHT99829.1 198 VEICPTGV 205
                 689***98 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.2
      Fer4_6   4 idpdkCigCg 13 
                 + p+ C +C 
  EHT99829.1 223 FAPSICQQCS 232
                 67999*9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.23s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 6734.18
//
Query:       EHT99830.1  [L=448]
Description: NADH:ubiquinone oxidoreductase, chain F [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-50  171.4   0.0    1.6e-50  170.9   0.0    1.2  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    1.2e-26   92.6   0.0    1.9e-26   91.9   0.0    1.3  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    6.3e-07   29.2   0.1    1.5e-06   28.0   0.1    1.6  1  SLBB          SLBB domain
  ------ inclusion threshold ------
        0.1   13.3   0.0       0.24   12.2   0.0    1.5  1  CP12          CP12 domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0   3.7e-54   1.6e-50       1     151 [.      56     228 ..      56     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 3.7e-54
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk...kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaea 94 
                   vk++g+ GrGGagf t++K++ ++k+++   +yl++Na+E+EPg++kDrllm++ ph+++eG+ i a al+a +g+i++r+e+ ea+ +l++a+aea
    EHT99830.1  56 VKDSGLKGRGGAGFSTGLKWSLMPKDESmniRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEA 152
                   79**********************98879******************************************************************** PP

  Complex1_51K  95 kaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaavy 151
                   ++agl           +++ v+++ag+Y++Gee+aLi+sl+gr + pr kpp  a +gv     +vnNveTl +v+
    EHT99830.1 153 TEAGLlgknilgtgfdFELFVHTGAGRYICGEETALINSLEGRrANPRSKPPfpASAGVwgkptCVNNVETLSNVP 228
                   *******************************************9999***999899999****************8 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   4.3e-30   1.9e-26       3      84 ..     341     423 ..     339     424 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 4.3e-30
                  HHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHS.S--SSTHHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   3 arrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetik.gtslCalgdsaanpvlsalrkFreefea 84 
                  +r+l ef+a+esCG+CtpCr G+++ +++l+ +++++g++ d+++le+l++++  g+++Ca++++a++p++sa+++Freefea
   EHT99830.1 341 VRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKKGQPGDIETLEQLCRQLGpGKTFCAHAPGAVEPLQSAIKYFREEFEA 423
                  78999************************************************989*************************97 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   3.4e-10   1.5e-06       5      53 ..     255     297 ..     255     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.4e-10
                 ESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSS CS
        SLBB   5 tGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGp 53 
                 +G Vk+Pg++e+p g+t ++++e++ G+++d+        r+ a  pgG+
  EHT99830.1 255 SGRVKNPGVWELPFGITAREILEDYAGGMRDGL-------RFkAWQPGGA 297
                 7*******************************9.......8888888886 PP

>> CP12  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.3e-05      0.24       8      45 ..     382     419 ..     380     424 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CP12   8 aieearevcaekgansaecaaawdeVeeLqaeaahqra 45 
                 +ie ++++c + g  ++ ca+a  +Ve Lq + +  r+
  EHT99830.1 382 DIETLEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFRE 419
                 68999*************************99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3309.66
//
Query:       EHT99831.1  [L=171]
Description: NADH:ubiquinone oxidoreductase, chain E [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-50  169.8   0.0    3.6e-50  169.6   0.0    1.0  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.0     2e-54   3.6e-50       3     145 .]      29     171 .]      27     171 .] 0.98

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 2e-54
                      HHHTTS--GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT--T CS
  2Fe-2S_thioredx   3 eiiakypekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklgika 96 
                      +  ++y++ r+a i++Lk+vQ+++gw+p+ a++++ae+lg+p+++v++vatFYs++ ++pvg++vi+ C++++C+++g + i +ale++l+ik+
       EHT99831.1  29 HEKHHYEDARAASIEALKIVQKQRGWVPDGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGFQGIQAALEENLNIKP 122
                      5678999*************************************************************************************** PP

                      T-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHHH CS
  2Fe-2S_thioredx  97 gettadgkftleeveClGaCanaPvvqindevyedltpekveeileklk 145
                      g+tt+dg+ftl  ++ClG+C+++P+++++++++ +ltpe ++++le+++
       EHT99831.1 123 GQTTTDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIASLLEQYQ 171
                      **********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1272.74
//
Query:       EHT99832.1  [L=599]
Description: NADH:ubiquinone oxidoreductase, chain C,D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-102  341.0   0.0   5.2e-102  340.6   0.0    1.1  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
    1.7e-41  141.7   0.4    3.7e-41  140.6   0.2    1.7  2  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.6   0.0  5.8e-106  5.2e-102       1     271 []     328     599 .]     328     599 .] 1.00

  Alignments for each domain:
  == domain 1  score: 340.6 bits;  conditional E-value: 5.8e-106
                     HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHT CS
  Complex1_49kDa   1 DlGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelg 95 
                     D+Ga+t++++af++R+ki+d++e++tG R++++++riGGva+Dlp+g+ + +++fl++++k+l+e++k   +n++++ R +gv++++ eeal++g
      EHT99832.1 328 DVGAMTPVFFAFTDRQKIYDVVEAITGFRMHPAWFRIGGVAHDLPKGWERLLRDFLDWMPKRLKEYDKAALRNTVLMGRSQGVAAYNMEEALAWG 422
                     9********************************************************************************************** PP

                     T-SSSSGGGT-TTTHHHHSS-SSGGGS-------SS.BSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTTS---GGGGGT-HHHHHHH CS
  Complex1_49kDa  96 ltGpvlRasGvkyDlRkaepYeaYdeldfdvpvgee.gDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkvalpkkeevkksmealihh 189
                     +tG+ lRa+G+++D+Rk +pY++Y+++df+vpvg   +D+y R+ +++eEm+qSl+I+eq+l+++pegp++a+++ +++p+ke++ +++e+li+h
      EHT99832.1 423 TTGAALRATGLDFDVRKWRPYSGYENFDFEVPVGAGiSDAYTRVQLKMEEMWQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITH 517
                     *********************************9988********************************************************** PP

                     HHHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
  Complex1_49kDa 190 fklvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                     f +v++g  +p++e ++++Ea+kG   +yl+sdgs+++yr+++r+psf +lq+++++++g+l++D++++lgs+d+v+++vDR
      EHT99832.1 518 FLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFPHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 599
                     *********************************************************************************9 PP

>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.2   4.2e-45   3.7e-41       1     120 [.      49     176 ..      49     178 .. 0.95
   2 ?   -3.6   0.0       1.8   1.6e+04      43      70 ..     545     574 ..     532     576 .. 0.52

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 4.2e-45
                     EE--HHHHHHHHHHHHH...TT--EEEEEEEEETT.........SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHH CS
  Complex1_30kDa   1 lvvepedllevakflkdeeelgfdvlsdltavDek.........eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayD 86 
                     ++v++e+lle+++fl++ ++  + +l dl+++De+          ++f+v+yhlls+e+n+ i++kv+++e++ +vp++t++f++a+wyERE+++
      EHT99832.1  49 VWVKREQLLEIITFLRKLPK-PYVMLYDLHGMDERlrthraglpAADFSVFYHLLSIERNRDIMLKVALSENDMHVPTITKIFANANWYERETWE 142
                     689*************9665.69**********888889999999************************99************************ PP

                     HSHHBCTTSSTSS-SSSSTTSSS-TTSTTS---- CS
  Complex1_30kDa  87 mfGivfeghpdlrrillpedfeghPLRkdfplsg 120
                     mfGi+f+ghp+l+ri++p+++eghPLRkd+p+++
      EHT99832.1 143 MFGITFDGHPHLTRIMMPQTWEGHPLRKDYPARA 176
                     *******************************986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.8
                     EEEE--S-.-EEEEEE......-S-BEE-- CS
  Complex1_30kDa  43 yhllsleknerirvkvevde..eepevpSv 70 
                     y+l+s  +  + r++v++++  + +++pSv
      EHT99832.1 545 YYLTSDGSTMSYRTRVRTPSfpHLQQIPSV 574
                     555543222333333333333235556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4746.91
//
Query:       EHT99833.1  [L=225]
Description: NADH:ubiquinone oxidoreductase, chain B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-21   75.4   0.0      5e-21   74.9   0.0    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   2.8e-25     5e-21       4     129 ..      69     175 ..      67     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.8e-25
                  HHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HHH CS
  Oxidored_q6   4 csisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeev 101
                  c ++++++ + + d+      r++ +++ +s         ++ad++v+ G+  +k+++ +++l++++ ++k+vi++G+CA +GG++  ++    +  v
   EHT99833.1  69 CYVEMTTSFTAVHDV-----ARFGAEVMRASP--------RQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYS----V--V 147
                  777777777777777.....677666665554........49********************************************5555....5..5 PP

                  HHHHC.S-E.EEE-SSS--HHHHHHHHH CS
  Oxidored_q6 102 gellevvpvdinipGCPphpeailetll 129
                  +++++ +pvd++ipGCPp+pea +++ll
   EHT99833.1 148 QGVDKFLPVDVYIPGCPPRPEAYMQALL 175
                  79***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1672.18
//
Query:       EHT99834.1  [L=147]
Description: NADH:ubiquinone oxidoreductase, membrane subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-32  109.5   0.6    7.3e-32  109.5   0.6    1.8  2  Oxidored_q4     NADH-ubiquinone/plastoquinone oxidoreductase,
  ------ inclusion threshold ------
       0.11   12.3   0.8       0.24   11.2   0.1    1.9  2  Phage_Coat_Gp8  Phage major coat protein, Gp8
        2.6    6.4   8.2      0.087   11.3   2.1    1.5  2  K_trans         K+ potassium transporter


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.6     0.052   3.1e+02      69      93 ..       8      32 ..       1      36 [. 0.67
   2 !  109.5   0.6   1.2e-35   7.3e-32       2      99 .]      28     125 ..      27     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.052
                 .HHHHHHHHHHHHHHHHHHHHHHHH CS
  Oxidored_q4 69 lglfgliemllFllillvglvYewk 93
                 + +++ +++++F++i +   ++ + 
   EHT99834.1  8 EIIAQHWAFIVFIVIAFGLCAFMLT 32
                 4566788899999888777777665 PP

  == domain 2  score: 109.5 bits;  conditional E-value: 1.2e-35
                  HHHHHHHCHSS-----HHHHS-SSSS--SS---.--HHCHHHHHHHHHHHHHHHHHHHHHHHHSST..HHHHHHHHHHHHHHHHHHHHHHHHH-S-XX CS
  Oxidored_q4   2 llllllsallgpkkpnkeklspYEcGfepvgearlrfsvkfylvallFliFDvevvflfpwavslkelglfgliemllFllillvglvYewkkgaLeW 99 
                  +++l+  +llg + + ++k++p+E+G+e+vg++++r+s+kfylva++F+iFDve++fl++wa+s++e+g++g++e+++F+l+ll+glvY ++ gaL+W
   EHT99834.1  28 AFMLTGGWLLGGRARARHKDTPFESGIESVGDTHIRLSAKFYLVAMFFVIFDVEALFLYAWATSIRESGWVGFVEAAIFILVLLAGLVYLVRIGALDW 125
                  5678889999999999********************************************************************************** PP

>> Phage_Coat_Gp8  Phage major coat protein, Gp8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     4e-05      0.24      21      38 ..       6      23 ..       2      27 .. 0.89
   2 ?   -2.9   0.0      0.99   5.9e+03      27      30 ..      86      89 ..      83      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
                    HHHHHHHHHHHHHHHHHH CS
  Phage_Coat_Gp8 21 AteligyaWavVvvvvvA 38
                     te+i + Wa +v +v A
      EHT99834.1  6 TTEIIAQHWAFIVFIVIA 23
                    69**************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.99
                    HHHH CS
  Phage_Coat_Gp8 27 yaWa 30
                    yaWa
      EHT99834.1 86 YAWA 89
                    8998 PP

>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4      0.26   1.5e+03     381     394 ..      12      25 ..       2      36 .. 0.46
   2 ?   11.3   2.1   1.5e-05     0.087     381     427 ..      66     111 ..      58     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.26
     K_trans 381 lklilvllvlllfl 394
                  +++++++++++f+
  EHT99834.1  12 QHWAFIVFIVIAFG 25 
                 23333333333333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.5e-05
     K_trans 381 lklilvllvlllfllidllflsanlkKipeGgwvplllavvllliml 427
                  k++lv++++++f  ++ lfl a  + i e gwv ++ a++++l++l
  EHT99834.1  66 AKFYLVAMFFVIF-DVEALFLYAWATSIRESGWVGFVEAAIFILVLL 111
                 4555555555555.899*************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1102.98
//
Query:       EHT99835.1  [L=307]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-28   98.1   0.1    7.8e-28   97.3   0.1    1.3  1  LysR_substrate  LysR substrate binding domain
    4.2e-18   65.0   1.5    7.9e-18   64.2   1.5    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.075   13.2   0.1       0.73   10.1   0.1    2.3  1  MGS             MGS-like domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.1   1.3e-31   7.8e-28       4     192 ..      97     273 ..      95     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.3e-31
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g L+iga+++++ ++lp ll + +  yP++ ++++++ ++ + ++l++ge+Dl++++  p   +++ ++L + p ++++++d+ + rge +  
      EHT99835.1  97 IQGVLTIGASDDTSDTILPFLLNSVTSVYPKLAIDVRVKRNPFMMEMLNQGEVDLVVTTSSP--GNFTHQVLRTSPTLWYCAADYVFQRGEAI-- 187
                     68********************************************************7766..55669****************7777*999.. PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                           pl+ll+e+s++rd + d l eag+++r+++ +++l+a++a+v+aGlG++  p  ++++el+  +     lp   +  ++ l+++++  
      EHT99835.1 188 ------PLVLLDEPSPYRDMAIDHLNEAGIPWRISYVASTLAAVRAAVKAGLGVTARPVEMMSPELRVMGAA-EGLPV-LPDTQYLLCRNADND 273
                     ......**********************************************************99987777.66666.455666666666653 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   1.5   1.3e-21   7.9e-18       1      59 [.      13      71 ..      13      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.3e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++lr+fvava+  +f++AA ++  +q+avs+q++rLE+++g +Lf R+gr+  LTe+G
  EHT99835.1 13 LDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHG 71
                689******************************************************98 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00012      0.73      14      75 ..      55     163 ..      42     172 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
                 CEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH..................................................HHHHHHHTTSCC CS
         MGS  14 fellATgGTakllkeagipvtevvektgegerlggrv..................................................eildaikngeid 62 
                  el+A +G  kll+e+gi+    + k+   +                                                          ++++++ge+d
  EHT99835.1  55 KELFARHGRNKLLTEHGIQLLGYARKILRFNDE---ActslmysniqgvltigasddtsdtilpfllnsvtsvypklaidvrvkrnpFMMEMLNQGEVD 150
                 666666666666666666654444444433111...124566666666666666666666667777777777777777777777777899********* PP

                 EEEEE--THHHHH CS
         MGS  63 lvintlypfkatv 75 
                 lv+ t +p + t 
  EHT99835.1 151 LVVTTSSPGNFTH 163
                 *******998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2172.47
//
Query:       EHT99836.1  [L=405]
Description: aspartate/tyrosine/aromatic aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-47  160.8   0.0    6.1e-47  160.5   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    0.00012   21.5   0.0    0.00019   20.9   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0042   16.1   0.0     0.0065   15.5   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.084   12.1   0.0       0.13   11.5   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   1.4e-50   6.1e-47       3     354 ..      36     389 ..      34     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 1.4e-50
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    v++L+++++    g + ++e++      +   +++  y +++g +++++a+++ ++ +   +++ e  +  g+G ++li+ ++++l ln gde lv
     EHT99836.1  36 VLKLNIGNPAPF-GFEAPDEILVDV---IRNLPSAQGYCDSKGIYSARKAIMQHYQARDMRDVTVE-DIYIGNGVSELIVQAMQAL-LNSGDEMLV 125
                    666666666665.444555544444...44889999********************8888888999.*******************.********* PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    p+p y+  + ++ ls g+ v y +++++++  dl+++  +++       +t++i++ +p+NPtG+v+++e l +++++a+++nl++f De+Y +  
     EHT99836.1 126 PAPDYPLWTAAVSLSSGKAVHYLCDESAGWFPDLDDIRSKITP------RTRGIVIINPNNPTGAVYSKELLMDVVEIARQHNLIIFADEIYDKIL 215
                    ******************************************9......*********************************************** PP

                    SSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHH.HHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavatranveeepnllivgslsKafGlaGeRvGyilgna......avvsqlrklsr.pflsssllqaavaaalsdallkqseleemrqrlqk 283
                    +++ ++ + +a ++++  +++ ++lsK + +aG+R G+ + n        +++ l+ l++ +++   ++q+a+ +al   + + se+ +   rl +
     EHT99836.1 216 YDAAQHHS-IAALAPDLLTVTFNGLSKTYRVAGFRQGWMVLNGpkkhakGYIEGLEMLASmRLCANVPAQHAIQTALGGYQSI-SEFIAPGGRLYE 309
                    **766666.999999999***********************9889*999888888877661455599**************86.6999999***** PP

                    HHHHHHHHHHHS.TEEEECCSCSSEEEEEETHH.....CHHHHHHH.......HHHTCTEEEEEGGGGTS..TTEEEEEC.TTS-HH CS
  Aminotran_1_2 284 rrkelrdeLael.glkvlasqsgmflltdlsae.....takelskk.......Lleevgvyvtpgtsftv..pgrlRitv.Agltee 354
                    +r++  + ++++ g+++++++++++++  ++a+     +              Ll+e +v++++gt f    p +lRi   + +++ 
     EHT99836.1 310 QRQRAWELINDIpGVSCVKPEGALYMFPKIDAKkfniqD------DqkmvldfLLQE-KVLLVQGTAFNWpwPDHLRIVTlPRVDDL 389
                    *********************************665542......144455679*99.********************986776664 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.1e-08   0.00019      45     144 ..     102     208 ..      95     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.1e-08
                      SSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHH.HTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-...GGGB--...-HHHHH CS
  DegT_DnrJ_EryC1  45 ssGtaAlhlaLralgvgpgdeVIvpsltFvatanavl.elgakpvfvDvdpdtynidpaaieaaitertkaIlpVh...lyGqva...dmdalk 131
                       +G + l +  +   ++ gde +vp+  +    +av+  +g  + ++  + + + +d ++i+++it+rt++I++++     G+v     +  + 
       EHT99836.1 102 GNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSlSSGKAVHYLCDESAGWFPDLDDIRSKITPRTRGIVIINpnnPTGAVYskeLLMDVV 195
                      566666666555555778***********865555540555444444446689********************997333345554232255678 PP

                      HHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 132 aiaakhglkvieD 144
                      +ia++h+l+++ D
       EHT99836.1 196 EIARQHNLIIFAD 208
                      9********9988 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06    0.0065      75     175 ..     107     208 ..      71     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
                  HHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEE.EBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB...--HHHHHHHHHHT CS
  Aminotran_5  75 nlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvi.pldeegeldldelekllnektklvaithvsnvtGti...qpveeigklakkk 168
                  +l+++++++ l+ gde++v + ++   + +++ l+   g  v+++    +++  dld+++++++++t+ + i   +n tG +   + + +++++a+++
   EHT99836.1 107 ELIVQAMQALLNSGDEMLVPAPDYPLWT-AAVSLS--SGKAVHYLcDESAGWFPDLDDIRSKITPRTRGIVIINPNNPTGAVyskELLMDVVEIARQH 201
                  4455555444999999999999999887.666665..89999998566778899***************************722235789999***** PP

                  T-EEEEE CS
  Aminotran_5 169 galvlvD 175
                  + ++++D
   EHT99836.1 202 NLIIFAD 208
                  ***9999 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.9e-05      0.13     110     167 ..     158     208 ..     111     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
                      -HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 110 dlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      dl++++++i++      +++ i++ + nn   G v+s e l  v +ia+++++ ++ D
       EHT99836.1 158 DLDDIRSKITP------RTRGIVIINPNNP-TGAVYSKELLMDVVEIARQHNLIIFAD 208
                      67777777777......5788888899985.8********************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3077.97
//
Query:       EHT99837.1  [L=199]
Description: nucleotidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-77  258.2   2.2      4e-77  258.1   2.2    1.0  1  HD_2      HD containing hydrolase-like enzyme
      9e-20   71.2   0.9    1.1e-19   70.9   0.9    1.1  1  HD_3      HD domain
    3.6e-08   33.7   1.2      5e-08   33.2   1.2    1.2  1  HD        HD domain
  ------ inclusion threshold ------
      0.044   13.3   0.1      0.065   12.7   0.1    1.3  1  HDOD      HDOD domain


Domain annotation for each model (and alignments):
>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.1   2.2     9e-81     4e-77       1     182 []       5     186 ..       5     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 258.1 bits;  conditional E-value: 9e-81
        HD_2   1 eFfallsrlkyieRwalmrntreenvaeHslevaliahalalienkkfggkldaerlallalyHDasEiitGDlptpvKyanpeireaykevEeeaeek 99 
                 +Ffa+lsrlk+i+Rw+lmrn+r+env+eHsl+va++ahala+i+nkkf+g+l+aer+a++alyHDasE++tGDlptpvKy+n +i+++yk++E++a++k
  EHT99837.1   5 HFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAIIKNKKFNGNLNAERIAMMALYHDASEVLTGDLPTPVKYYNAQIAHEYKKIEKIAQQK 103
                 8************************************************************************************************** PP

        HD_2 100 llelLpeelreeyeelladeeaeeeekklvkaaDklsalikcleelkagnkeFeeakkeieeklkelelpevdyFleeflpsl 182
                 l+e+Lp+el++ y++l+ ++  +e+ek +vk+aD l+a++kcleel+agn+eF  ak+++e++l + + pe++yF+e f+ps+
  EHT99837.1 104 LIEMLPDELQDVYRPLIDEHLHSEDEKAVVKQADALCAYVKCLEELSAGNNEFLLAKARLEKTLTQRRSPEMSYFVEVFIPSF 186
                 *****************87777889********************************************************97 PP

>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.9   2.5e-23   1.1e-19       2     143 ..      11     158 ..      10     178 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 2.5e-23
        HD_3   2 ekLKfqkRqgwlqtgrvreesvaeHmwrvalmalll....seelkekvdiarvikmfLiHDlvEiltgDiispd.....elakeekeeeekeaaerilk 91 
                  +LK + R  w    +vr e+v+eH++ va++a  l    +++++ +++ +r+  m+L HD  E+ltgD+++p+     ++a+e+ ++ ek a++++++
  EHT99837.1  11 SRLKLINR--WPLMRNVRTENVSEHSLQVAMVAHALaiikNKKFNGNLNAERIAMMALYHDASEVLTGDLPTPVkyynaQIAHEY-KKIEKIAQQKLIE 106
                 69******..***999**************98765511116788899***************************77753344444.4557899****** PP

        HD_3  92 llpeelaeellalweEFeeretkeakfakdlDklepllqalekegdslaaf.e 143
                 +lp+el++ ++ l++E   +e++ a + k+ D+l + +  le+    +++f  
  EHT99837.1 107 MLPDELQDVYRPLIDEHLHSEDEKAVV-KQADALCAYVKCLEELSAGNNEFlL 158
                 *****************9988888766.999**99999999888888887742 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   1.2   1.1e-11     5e-08       2     120 ..      31     140 ..      30     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.1e-11
                 HHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHTTTTHHHHTS..HHHHHH.CTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHH CS
          HD   2 leHsleVaklarrlaedlge....eedrellllaaLlHDiGkgpfgdafekkeee.fekflaHekvgaeilrevekrlgld...ledvaklirehhesw 92 
                  eHsl+Va +a  la+  ++    + + e++ ++aL+HD  ++++gd  + ++ + ++ + aHe    e++ + ++ + l+    +    li eh++s+
  EHT99837.1  31 SEHSLQVAMVAHALAIIKNKkfngNLNAERIAMMALYHDASEVLTGD--LPTPVKyYNAQIAHEYKKIEKIAQQKLIEMLPdelQDVYRPLIDEHLHSE 127
                 69***************999**************************9..333333688889999998888888888888889*6666778********9 PP

                 HHHHHHHHHHCCTSCHHHHHHHHHHHHH CS
          HD  93 egkkrprglaerqlslearivklaDrla 120
                 +               e  +vk aD+l 
  EHT99837.1 128 D---------------EKAVVKQADALC 140
                 9...............788888888875 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.5e-05     0.065      87     161 ..      22     100 ..       5     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
                 .-SS-HHHHHHHHHHHHHHHHHHHHHT.....T-S-HHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHH---HHHHH CS
        HDOD  87 eegadlkklwehslavAlvarelaeel.....gledpeeaflaGLLhdiGklvllsllpeeleellekvaeeelslleae 161
                 +++++ +++ ehsl+vA+va +la        g  ++e++ + +L hd  +++    lp  ++  ++++a e ++ +++ 
  EHT99837.1  22 MRNVRTENVSEHSLQVAMVAHALAIIKnkkfnGNLNAERIAMMALYHDASEVLTG-DLPTPVKYYNAQIAHEYKKIEKIA 100
                 6789999****************97664555555566***********9998665.456666666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1527.97
//
Query:       EHT99838.1  [L=219]
Description: sugar phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-25   90.6   0.0    1.5e-25   90.3   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.8e-16   60.0   0.2    1.4e-14   54.9   0.2    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    3.4e-07   30.9   0.0      4e-07   30.6   0.0    1.1  1  HAD             haloacid dehalogenase-like hydrolase
    0.00039   20.4   0.0    0.00074   19.5   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
    0.00056   20.0   0.0     0.0022   18.1   0.0    1.9  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   4.1e-29   1.5e-25       2     178 .]       7     181 ..       6     181 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 4.1e-29
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkk.kevkpydgvkelLeeLkeagyklg 99 
                 +FDlDgTl+d+ +++  a+ ++ +++g+    +e l+ + g +   +lr++   + e  + +e+l   ++e ++ + vk ++g+  lL +L+e ++  +
  EHT99838.1   7 LFDLDGTLVDSLPAVERAWSNWGARHGI--AADEILDFIHGKQAITSLRHFMAGQSEAAIQAEFLALEKTEAEDtDGVKALPGALALLTQLNELQIPWA 103
                 8*************************76..888888999999999******9988887777777665555555567*********************** PP

       HAD_2 100 ivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                 ivTs+s  ++    ++ g+  +  v +t+e+v k KP+p++++   e+lkl+++++++v+D p +++a+  ag+ viav
  EHT99838.1 104 IVTSGSVPVAHARHKAAGL-PLPAVFITAEQVAKGKPEPDPYLLGAERLKLSPADCVVVEDAPAGVIAGLSAGCAVIAV 181
                 ******************7.788999***************************************************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.2   3.9e-18   1.4e-14       4     210 .]       6     175 ..       3     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 3.9e-18
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtval 102
                 ++fD+dGTL+++ p ve+++                         a +  ++a +++  fi   ++    + +++ +          ++a  q++  a 
  EHT99838.1   6 FLFDLDGTLVDSLPAVERAWSNW---------------------GARH--GIAADEILDFIHGKQAITSLRHFMAGQ----------SEAAIQAEFLA- 70 
                 89*********************.....................2222..233333333222223333444444444..........22222333333. PP

                 HTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 103 lqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvn 201
                     +  + +  d  k  p+a  ++ +L++  i+++++t+++   a++  + +G    ++ i+++ ++ +kp+p+ ++  +++L+ +p+++++V+D + 
  EHT99838.1  71 ---LEKTEAEDTDGVKALPGALALLTQLNELQIPWAIVTSGSVPVAHARHKAAGLPLPAVFITAEQVAKGKPEPDPYLLGAERLKLSPADCVVVEDAPA 166
                 ...4456666668888*******************************99999**66668999999999******************************* PP

                 HHHHHHHTT CS
                 xxxxxxxxx RF
   Hydrolase 202 DaaalaaAg 210
                 ++ a+  Ag
  EHT99838.1 167 GVIAGLSAG 175
                 999998887 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.1e-10     4e-07       2     123 ..       7     121 ..       6     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.1e-10
         HAD   2 lfDfDgTLldg.dslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfv....aevirpk....lldpga 90 
                 lfD+DgTL+d+    e  + ++++r++  + + l     ++ + +            l++++ag s +++ ae+ ++     +          +l pga
  EHT99838.1   7 LFDLDGTLVDSlPAVERAWSNWGARHGIAADEILDFIHGKQAITS------------LRHFMAGQSeAAIQAEFLALEkteaE----DTdgvkAL-PGA 88 
                 8**********6666677777888877664333333344444444............45555555556666666666633221....22222245.*** PP

         HAD  91 lellaahraaGdrvvvvSgglrplvepllaelg 123
                 l+ll +  +  ++ ++v++g  p++++  ++ g
  EHT99838.1  89 LALLTQLNELQIPWAIVTSGSVPVAHARHKAAG 121
                 ***********************9987655555 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.1e-07   0.00074       3      49 ..     137     182 ..     135     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.1e-07
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEES CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVl 49 
                     gKPep  y   +e+l++ p++++++ D   + ++++  aG+  ++V 
      EHT99838.1 137 GKPEPDPYLLGAERLKLSPADCVVVEDA-PAGVIAGLSAGCAVIAVN 182
                     9***************************.99*************995 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.1e-07    0.0022       1      46 [.       6     115 ..       6     137 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.1e-07
                  EEEESTTTSE................................................................ETTEE-TTHHHHHHHHHHTT-EEE CS
  Hydrolase_6   1 flfDidGvLw................................................................rgdkaipgaaealnalraagkpvv 34 
                  flfD+dG+L+                                                                +g ka+pga  +l++l++ ++p +
   EHT99838.1   6 FLFDLDGTLVdslpaverawsnwgarhgiaadeildfihgkqaitslrhfmagqseaaiqaeflalekteaedtDGVKALPGALALLTQLNELQIPWA 103
                  79**********************************************************************999*********************** PP

                  EEE---SS-HHH CS
  Hydrolase_6  35 llTNnsskseee 46 
                  ++T +s     +
   EHT99838.1 104 IVTSGSVPVAHA 115
                  ****99766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1607.25
//
Query:       EHT99839.1  [L=164]
Description: YfbU family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-68  227.7   2.5    8.3e-68  227.6   2.5    1.0  1  YfbU      YfbU domain


Domain annotation for each model (and alignments):
>> YfbU  YfbU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.6   2.5   4.6e-72   8.3e-68       1     166 []       1     164 []       1     164 [] 1.00

  Alignments for each domain:
  == domain 1  score: 227.6 bits;  conditional E-value: 4.6e-72
        YfbU   1 meltaaerliLanqykilalldpenaekYqrlrailerGyelelkelekeftelseeeceevldiLemyralqlsiknlkeeeqkeiearrleFsGfda 99 
                 me+t+a+rliLanqyk++a+l+penae+++r+++i+erGy+l+++el+kef+else++c++ +di+em++alq+s++nlk e   ei+ rrl F Gfda
  EHT99839.1   1 MEMTHAQRLILANQYKMMAMLEPENAERFRRYQTIIERGYSLQMRELDKEFGELSEATCRTLIDIMEMHHALQISWSNLKTE--GEIDTRRLAFLGFDA 97 
                 9*********************************************************************************..99************* PP

        YfbU 100 neEkkllsYvrfliedeklyeelkkkkddlnShtpmldkYrrMLavwrecpkkykLsieeikqilnA 166
                 ++E+++l Yvrf++++e++y+++++ ++++n++tpm++kY+rMLa w++cp++y+Ls++ei qi+nA
  EHT99839.1  98 ATESRYLGYVRFMVNTEGRYTHFDSGTHGFNAQTPMWEKYQRMLALWQTCPRQYHLSVNEIAQIINA 164
                 *****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1218.42
//
Query:       EHT99840.1  [L=149]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-60  201.3   0.2    6.4e-60  201.1   0.2    1.0  1  DUF412    Protein of unknown function, DUF412


Domain annotation for each model (and alignments):
>> DUF412  Protein of unknown function, DUF412
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.2   3.6e-64   6.4e-60       1     141 []       9     147 ..       9     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 3.6e-64
      DUF412   1 lvkllkdGqkYlktwPlekeLaalfpenrvikatrfaikvmpalavltlvlqlylagsealpqailtalfllsLPlQGlywlGkraktpLppslaswyk 99 
                 +++++++Gq+Y+ktwP++k+La++fpenrv  atrfai++mp+lav+tl++q++++g  +l  a++talf++sLP+QGl+wlGkr+ tpLpp+l++w++
  EHT99840.1   9 WFRMFQRGQHYMKTWPNDKRLAPVFPENRVSTATRFAIRFMPPLAVFTLTWQIAMGG--QLGPAVATALFACSLPMQGLWWLGKRSVTPLPPTLLRWFH 105
                 699******************************************************..**************************************** PP

      DUF412 100 eikeklkeqgaalaaakekptyqdLaelLkkafkkldksfle 141
                 +++ kl+++g+a+a+++ +ptyq La+lLk+afk+ld++fl+
  EHT99840.1 106 DVRTKLEAAGQAIAPVEGTPTYQALADLLKRAFKQLDRTFLD 147
                 ****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1255.00
//
Query:       EHT99841.1  [L=400]
Description: acetate kinase A and propionate kinase 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.1e-170  564.5   0.0     1e-169  564.3   0.0    1.0  1  Acetate_kinase  Acetokinase family
  ------ inclusion threshold ------
      0.033   13.2   0.0       0.05   12.6   0.0    1.2  1  Glucokinase     Glucokinase
      0.072   12.6   0.0       0.17   11.3   0.0    1.5  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.3   0.0  1.8e-173    1e-169       2     390 .]       6     393 ..       5     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 564.3 bits;  conditional E-value: 1.8e-173
  Acetate_kinase   2 vLviNaGSsSlKfqlleaeakeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhggek 96 
                     vLv+N+GSsSlKf++l++ +++++ l+gl+e+++l+ea++++kl+g+k+ea   a a+h+eal++i++t+ + ++ +++++iaaighR+vhggek
      EHT99841.1   6 VLVLNCGSSSLKFAILNP-TTGDEFLSGLAECFHLPEARIKWKLDGQKQEAPLDAGAAHSEALNFIVKTILA-QKPELSAQIAAIGHRIVHGGEK 98 
                     9*****************.6999999**********************9999*******************9.79******************** PP

  Acetate_kinase  97 ftesvlitdevvekikdlielaplhNpanlegieaakkllpevk..nvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskra 189
                      t+sv+i d+vv+ ikd++++aplhNpa+l+gi++a k +p++   nvavfDtafhqt+pee+ylyalp++ly++hg+Rryg+Hgtsh+yv+++a
      EHT99841.1  99 LTQSVVISDAVVQGIKDAASFAPLHNPAGLIGIDEAMKNFPHLSdkNVAVFDTAFHQTMPEESYLYALPYALYKDHGVRRYGAHGTSHYYVTHEA 193
                     ******************************************9888************************************************* PP

  Acetate_kinase 190 akilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlre 284
                     ak+l+kple ln+i+cHlGnG+Sv+a++nG++vdtsmgltpLeGlvmgtRsGdidpai+++l++t g+ +d ++++l+k+sGllgl++++sD+r+
      EHT99841.1 194 AKMLNKPLETLNIITCHLGNGGSVSAIRNGECVDTSMGLTPLEGLVMGTRSGDIDPAIIFFLHDTLGMNVDAINKMLTKESGLLGLTEVTSDCRY 288
                     *********************************************************************************************** PP

  Acetate_kinase 285 vedaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknk.nrsGedelisteqskvkvi 378
                     ved++ +++++a++a++v++hrlakyig+y+a ++g++D+++FTgGigenaa+vrel+lk+l++lg+e+d+++n  +r+G+ ++i++e s+  ++
      EHT99841.1 289 VEDNY-ATKDDAKRAMDVFCHRLAKYIGSYTALMDGRLDGVIFTGGIGENAAMVRELTLKKLALLGFELDHDRNLaARFGKAGFINKEGSR-PAL 381
                     *****.5666****************************************************************77***************.*** PP

  Acetate_kinase 379 vvptnEelaiaq 390
                     v+ptnEel+ia+
      EHT99841.1 382 VIPTNEELVIAR 393
                     **********96 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.4e-06      0.05     226     266 ..     295     336 ..     260     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-06
  Glucokinase 226 edplarealelFlailGsvagd.laLkllargGvyiaGGiap 266
                  ++  a++a+++F++ l+++ g   aL+ + ++Gv  +GGi  
   EHT99841.1 295 TKDDAKRAMDVFCHRLAKYIGSyTALMDGRLDGVIFTGGIGE 336
                  345799*************998469**************965 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.73   4.3e+03      83     130 ..     180     230 ..     148     232 .. 0.66
   2 ?   11.3   0.0   2.9e-05      0.17     182     236 ..     290     344 ..     285     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.73
                  EEE-..HHHHHHHHHHHH-TT--EEEEE...ETTEEEEEEEETTEEEEEEE CS
  BcrAD_BadFG  83 keiirseilvhgdGavalypgtrtvldi...gGqdskgiqidkgkvenfqm 130
                    + +s+ +v +++a +l+   +t   i    G +  + +i++g+ ++ +m
   EHT99841.1 180 GAHGTSHYYVTHEAAKMLNKPLETLNIItchLGNGGSVSAIRNGECVDTSM 230
                  456667888888888888887776555522246677777777666666555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2.9e-05
                  HHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH CS
  BcrAD_BadFG 182 rdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkel 236
                  +d  +  + a++ ++  ++ +a+++ ++    +g+ d v++tGG+ +n+a+v+el
   EHT99841.1 290 EDNYATKDDAKRAMDVFCHRLAKYIGSYTALMDGRLDGVIFTGGIGENAAMVREL 344
                  5666677778888999999***********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3038.55
//
Query:       EHT99842.1  [L=715]
Description: phosphate acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-128  428.0   0.5   4.1e-128  427.2   0.5    1.4  1  PTA_PTB   Phosphate acetyl/butaryl transferase
    1.9e-52  178.0   0.0    4.2e-52  176.9   0.0    1.6  1  AAA_26    AAA domain
    5.9e-31  106.4   0.0    2.2e-30  104.5   0.0    2.1  1  DRTGG     DRTGG domain
     0.0022   18.1   0.0         19    5.5   0.0    3.4  3  LPD7      Large polyvalent protein-associated domain 7


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.2   0.5  9.1e-132  4.1e-128       2     319 .]     391     706 ..     390     706 .. 0.99

  Alignments for each domain:
  == domain 1  score: 427.2 bits;  conditional E-value: 9.1e-132
                 HHHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHHCTB--TT.-EEE-TTT-CCHHHHHHHHHHHCCCC.S-HCCHHH CS
     PTA_PTB   2 flerivekakkekkrivlpegedervlkAakelleegiadviLigdeaeikakaleldldlsg.ieivdpetsekleeyadelyelrkrkgvtieeare 99 
                 f ++++e a+k+ krivlpeg+++r++kAa+ ++++gia+++L+g++ ei++ a+ ++++l++ ieivdpe  +  ++y+ +l+elrk+kg+t   a+e
  EHT99842.1 391 FRYQLTELARKAGKRIVLPEGDEPRTVKAAAICADRGIATCVLLGNPDEIQRVAAVQGVELGKgIEIVDPEVVR--QNYVPRLVELRKNKGMTEVVAQE 487
                 7889**********************************************************99********99..9********************** PP

                 HTTSHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS--EE CS
     PTA_PTB 100 vvrdatyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakalgeeeprv 198
                 +++d++++++m++++ge+DglvsGav+tta+t+rp lq+ikt+p  +lvSsvf+mll++++l+++Dca+n++Ptae+laeia++sa++aka+g ++prv
  EHT99842.1 488 QLEDNVVLGTMMLERGEVDGLVSGAVHTTANTIRPPLQLIKTAPNSSLVSSVFFMLLPEQVLVYGDCAINPDPTAEQLAEIAIQSADSAKAFG-IDPRV 585
                 *********************************************************************************************.***** PP

                 EEE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCCTEEEEEEEEESBSS CS
     PTA_PTB 199 AlLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrlakaeaiGPilqGlak 297
                 A++SySt +s+ g++vekvrea+++++ek+pdlv+dG+lq+DaA++e+va++kap+s+vaG+A+v++fPdL++gn +yk+vqr a++++iGP+lqG++k
  EHT99842.1 586 AMISYSTGNSGAGSDVEKVREATRLAQEKRPDLVIDGPLQYDAAIMEDVAKSKAPNSQVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGMRK 684
                 *************************************************************************************************** PP

                 -EEE--TT--HHHHHHHHHHHH CS
     PTA_PTB 298 PvndlSrgasvedivnvaaita 319
                 PvndlSrga v+div ++a+ta
  EHT99842.1 685 PVNDLSRGALVDDIVYTIALTA 706
                 ********************97 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.0   9.3e-56   4.2e-52       1     197 [.       3     229 ..       3     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: 176.9 bits;  conditional E-value: 9.3e-56
      AAA_26   1 rtifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgieededselikellgldqtyelpeplalsaplspelaarqegedidlekiv...kele 96 
                 rti++++t+t+vG+T+vslg++ra++rkgv++++fKPi++++  +  ++ ++++++ ++ + ++epl +s+  ++ l++ + ++d+ +e+i+   ++++
  EHT99842.1   3 RTIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRAGGNAPDQTTSIVRKNSGIPAAEPLPMSRV-ES-LLGSN-QQDVLMEEIIaryHANT 98 
                 79*******************************************************************965.44.55543.45899*******999** PP

      AAA_26  97 kdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealr.....qknvrvlGvilNkvrnp..e................. 171
                 +da++v+VEG+ ++++++++ +ln++iak+l+a++++V++ g+++++ql  +ie+ +      kn++++Gvi+Nk+++p  e                 
  EHT99842.1  99 QDAEVVLVEGLVPTRKHQFASALNYEIAKTLNAEIVFVTALGNDSPAQLKERIELTQssfggAKNKNITGVIINKLNAPvdEqgrtrpdlseifddstk 197
                 ********************************************************95555559***************76155566777788889999 PP

      AAA_26 172 ......nvetlekksgipvlGvvPylpdleap 197
                       n ++l+++s++p+lG+vP++ dl+a+
  EHT99842.1 198 asianiNPDQLFANSPLPILGCVPWSFDLIAT 229
                 9999************************9986 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   4.9e-34   2.2e-30       1     104 [.     233     344 ..     233     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 4.9e-34
                 HHHHHTT-EEEE--..SS--E-EEEE-SS-HHHHHHHHHTSEEEEEETT-HHHHHHHTT-T.....EEEEEEETT----HHHHHHHHHHT...--EEE- CS
       DRTGG   1 eiaealgaevlnggeeelrrvekvvvgamsvenmlerlkegdlvivpGDRediqlaaleag.....iaalilTgglepseevlklaeeag...lpvlsv 91 
                 + +++l+a+++n+ge ++rrv++v+++a+s+++mle++++g+l+++++DR d+++aa++a+     i a++lTg++e++e+++kl+e+a    lpv+ v
  EHT99842.1 233 DMCRHLNARIINEGEIQTRRVKSVTFCARSIPHMLEHFRPGSLLVTSADRPDVLVAACLAAmngveIGAILLTGNYEIDERIAKLCERAFqtgLPVFMV 331
                 5789*************************************************************************************99******** PP

                 SS-HHHHHHHHHT CS
       DRTGG  92 eldtfttakrinq 104
                 +++t++t+  +++
  EHT99842.1 332 KTNTWQTSLSLQS 344
                 *******998876 PP

>> LPD7  Large polyvalent protein-associated domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0042        19      29      77 ..     276     328 ..     252     337 .. 0.84
   2 ?    3.0   0.0     0.025   1.1e+02      22      84 ..     399     460 ..     378     466 .. 0.72
   3 !    5.1   0.0    0.0055        25      35      72 ..     599     636 ..     582     644 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0042
        LPD7  29 ievtsddddeavaaalelAqakw..gsltvsGseeFkreaweaaa...erglev 77 
                 ++ ts+d+++++ aa  +A+     g++ ++G+ e  +++++++    + gl+v
  EHT99842.1 276 LV-TSADRPDVLVAACLAAMNGVeiGAILLTGNYEIDERIAKLCErafQTGLPV 328
                 44.99999***********999545****************9995333666666 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.025
        LPD7  22 ftDrgdrievtsddddeavaaalelAqakwgsltvsGse.eFkreaweaaaer..glevtyeptdp 84 
                  +  g+ri++ + d++++v+aa   A     +  + G++ e +r a+ +++e   g+e+     dp
  EHT99842.1 399 ARKAGKRIVLPEGDEPRTVKAAAICADRGIATCVLLGNPdEIQRVAAVQGVELgkGIEIV----DP 460
                 566799999977788999999988885557666666665378888888888773355555....55 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0055
        LPD7  35 dddeavaaalelAqakwgsltvsGseeFkreaweaaae 72 
                 +d e+v+ a +lAq+k   l ++G+ ++ +++ e +a+
  EHT99842.1 599 SDVEKVREATRLAQEKRPDLVIDGPLQYDAAIMEDVAK 636
                 56799***********99**********9999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5203.39
//
Query:       EHT99843.1  [L=361]
Description: ATP-binding component of an ABC superfamily spermidine/putrescine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-33  115.6   0.0    3.8e-33  114.9   0.0    1.3  1  ABC_tran  ABC transporter
    1.6e-17   63.4   0.0    4.6e-17   62.0   0.0    1.8  1  TOBE_2    TOBE domain
     0.0023   17.4   0.4       0.07   12.6   0.2    2.1  2  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.035   13.7   0.1      0.089   12.4   0.0    1.7  2  AAA_25    AAA domain
      0.039   13.7   0.9        1.7    8.3   0.0    2.2  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
      0.041   14.1   0.1       0.13   12.6   0.0    1.8  2  AAA_22    AAA domain
      0.062   12.3   0.0        0.1   11.6   0.0    1.4  1  T2SSE     Type II/IV secretion system protein
      0.095   13.1   0.0       0.22   11.9   0.0    1.6  1  AAA_16    AAA ATPase domain
       0.13   12.0   0.0       0.28   11.0   0.0    1.5  1  AAA_29    P-loop containing region of AAA domain
       0.22   11.2   0.2        3.1    7.5   0.0    2.1  2  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   2.1e-36   3.8e-33       2     136 ..      22     163 ..      21     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 2.1e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 +n++l++ ege + ++G++G+GK+t l++lag ++pt Geill++k+l++  l+  ++ ig+++q+  lfp++tv+en             + ++++++
  EHT99843.1  22 RNLNLDVAEGEFLTLLGPSGSGKTTSLMMLAGFETPTDGEILLRDKPLHT--LPPHQRDIGMVFQNYALFPHMTVAENlafplsirrlskaDIKVRVKR 118
                 79***********************************************9..***********************************998888888999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l+ ++l+ l+d+      +++SgGq+qrvalaral+ +p+l+l+DEp 
  EHT99843.1 119 VLDMIKLTSLADRYP----AQMSGGQQQRVALARALVFEPRLILMDEPL 163
                 999999999888887....*****************************6 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.5e-20   4.6e-17       1      76 []     280     356 ..     280     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.5e-20
      TOBE_2   1 laiRPEklrlaaagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 l+iRPE++ ++a+ + + ++++t+++ +ylG+++r++ ++ag+  ++v+ +++d + +++pG++V lsw+p+++++l
  EHT99843.1 280 LSIRPERINVNAPKPgDQSVQATIQQFIYLGDHVRMLTDVAGQGNFMVKLASSDVAPDWKPGSEVMLSWQPQHLRAL 356
                 79********84444256***************************999999998557999*************9876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.037        67      24      39 ..      31      46 ..      11      52 .. 0.79
   2 !   12.6   0.2   3.9e-05      0.07     122     215 ..     121     210 ..      79     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.037
                SSEEEEEESTTSSHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsn 39
                 +f  ++Gp GSGK+ 
  EHT99843.1 31 GEFLTLLGPSGSGKTT 46
                568899********85 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.9e-05
                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkve 215
                 ++ +l + a+ ++ ++SgG+++ vala  +    ++p+ l l+De   aLD++ ++ +   +k+ ++   + ++ +++++ e +    +v   +
  EHT99843.1 121 DMIKLTSLADRYPAQMSGGQQQRVALARAL---VFEPR-LILMDEPLGALDKQLREHMQMEIKQLHNLLGLTIVYVTHDQSEAMTMSDRVAVFN 210
                 444444444445669*******99998654...34554.89*************************9988877777777777776655555444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05     0.089      30      56 ..      28      54 ..       5      74 .. 0.84
   2 ?   -2.6   0.0       1.9   3.5e+03     114     141 ..     154     182 ..     110     195 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
      AAA_25 30 lpagelallaGapgtGKttlaldlala 56
                +++ge+  l G++g+GKtt ++ la  
  EHT99843.1 28 VAEGEFLTLLGPSGSGKTTSLMMLAGF 54
                479******************999866 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
      AAA_25 114 lpLfakdrggtl.ltadvdaleaaieeve 141
                  +L+ +d    +  ++  ++++ +i++ +
  EHT99843.1 154 PRLILMDEPLGAlDKQLREHMQMEIKQLH 182
                 33333333333313444445555555544 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.02        36       3      19 ..      35      51 ..      33      95 .. 0.79
   2 ?    8.3   0.0   0.00097       1.7     227     298 ..     126     195 ..      95     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.02
      AAA_21  3 vliGpNgsGKSnLLdal 19
                 l Gp gsGK++ L  l
  EHT99843.1 35 TLLGPSGSGKTTSLMML 51
                699********966665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00097
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++  ++ ++++S G+++  al+ al   +   +l+l DEp   L+ +l ++    +k+l++  g  ++ +TH+
  EHT99843.1 126 TSLADRYPAQMSGGQQQRVALARALVFEP---RLILMDEPLGALDKQLREHMQMEIKQLHNlLGLTIVYVTHD 195
                 455567799*********9********99...**************9999999999999999999******98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.1e-05      0.13       6      26 ..      32      52 ..      28      74 .. 0.89
   2 ?   -2.2   0.0       2.6   4.7e+03      93      99 ..     155     161 ..     125     196 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.1e-05
      AAA_22  6 gilvvtGesGtGKTtllrrll 26
                 +l++ G+sG+GKTt+l +l+
  EHT99843.1 32 EFLTLLGPSGSGKTTSLMMLA 52
                6899************98876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.6
      AAA_22  93 elliiDE 99 
                 +l++ DE
  EHT99843.1 155 RLILMDE 161
                 4444444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.7e-05       0.1     103     162 ..       5      64 ..       1      98 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.7e-05
       T2SSE 103 ltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivt 162
                 ++++++ ++ + ++ + + l+  v+e   + + G+ gsGKtt+l +l  +   +d +i++
  EHT99843.1   5 VSFRNIKKSYDGDKLVVRNLNLDVAEGEFLTLLGPSGSGKTTSLMMLAGFETPTDGEILL 64 
                 56677777777788888999999999999999************9887766666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.22      20      45 ..      29      52 ..      19     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      AAA_16 20 rsgrpelvllsGesGvGKsslvrell 45
                ++g  e + l G+sG+GK++ + +l+
  EHT99843.1 29 AEG--EFLTLLGPSGSGKTTSLMMLA 52
                444..7899***********998876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.28      18      37 ..      27      46 ..      20      51 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
      AAA_29 18 eidlkgatlltGpsGsGKST 37
                ++ + ++  l GpsGsGK+T
  EHT99843.1 27 DVAEGEFLTLLGPSGSGKTT 46
                45544488899********9 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0017       3.1       6      22 ..      35      51 ..      32      66 .. 0.86
   2 ?    1.4   0.0      0.12   2.2e+02     106     151 ..     169     216 ..     168     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
      AAA_24  6 liyGpsgiGKTtlakel 22
                 + Gpsg+GKTt++ +l
  EHT99843.1 35 TLLGPSGSGKTTSLMML 51
                689*********98776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
      AAA_24 106 elaeefrrllkklqelrk.nvifiahektrkdedpege.akytrlepk 151
                 +l+e ++  +k+l++l + +++ + h + + ++  ++    +++++++
  EHT99843.1 169 QLREHMQMEIKQLHNLLGlTIVYVTHDQSEAMTMSDRVaVFNDGMIQQ 216
                 577888889999*999999*********99998776653333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2625.87
//
Query:       EHT99844.1  [L=497]
Description: putative GntR family transcriptional regulator/aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-26   90.9   0.0    1.4e-25   90.3   0.0    1.2  1  Aminotran_1_2   Aminotransferase class I and II
    6.3e-15   54.6   0.3    2.9e-14   52.4   0.1    2.3  2  GntR            Bacterial regulatory proteins, gntR family
     0.0098   15.8   0.2      0.035   14.0   0.2    2.0  1  MarR_2          MarR family
  ------ inclusion threshold ------
      0.026   14.1   0.1      0.091   12.3   0.0    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.031   14.2   0.6      0.083   12.9   0.2    2.0  2  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.033   14.5   0.0      0.081   13.3   0.0    1.6  1  Rrf2            Transcriptional regulator
       0.08   12.8   0.5        0.2   11.5   0.5    1.7  1  HTH_IclR        IclR helix-turn-helix domain
       0.12   12.6   0.1       0.43   10.8   0.0    2.0  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.17   11.9   0.5        0.6   10.1   0.1    2.1  2  HTH_11          HTH domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   6.9e-29   1.4e-25      34     356 ..     158     475 ..     137     480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 6.9e-29
                    HTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTE CS
  Aminotran_1_2  34 ggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfh 129
                      ++ +y    g  el++ala++l+    ++  +e +v+v+ G+++ +++l+ +l ++pgd+ lv +p y  + n+l  +g+++++ p        
     EHT99844.1 158 PVENLSYASHGGCTELQQALADYLRVIRSVNCSPE-QVLVTAGTHQSLDLLAKML-CDPGDRALVEEPGYWGIRNVLAVNGVTLIPTP-------- 243
                    5577889999999************999*******.*******************.8*******************************........ PP

                    E-HHHHHHHHTTHHCTTE.TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTS CS
  Aminotran_1_2 130 ldlealeealkeapegnk.ktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafG 224
                    +d ++l    +  +++++ ++ + ++ s + P G+v++l+  ++ll+ ak+ + +++ D+  ++f f  + +++++ +++++  ++ +g++sK + 
     EHT99844.1 244 VDEQGLVLPPE--QPDSPaPRLICVTPSHQYPLGAVMSLQRRHELLERAKRSGSWVVEDDYDGEFRFSGS-PIPALQGLAADAPVIYLGTFSKTL- 335
                    66666655333..344442444556667778*****************************9999999865.55669999999999********98. PP

                    SGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCSSEEEEEETHH. CS
  Aminotran_1_2 225 laGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsgmflltdlsae. 315
                     +G+R+ y ++ + ++  ++ +++ ++     l ++++aa   +  ++ ++  mrq + +rr  l++ + +    +++v  s++g+ l+ +l+ + 
     EHT99844.1 336 YPGIRLSYMVVPKSMATRMKMAHSELYRgGYGLVQLTLAAFIREGHYAAHVRRMRQIYSRRRAALVAVISQSlgaDWIVHHSNAGLHLVLRLPDSi 431
                    8***************************966667777777777788999********************8889**********************7 PP

                    CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHH CS
  Aminotran_1_2 316 takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeel 356
                    ++ ++s +L e++gv+ +p +s+++    +  l + +A+++e+++
     EHT99844.1 432 DDVAFSAEL-EQCGVLTRPLSSYYLqgtpQRGLLLGYACVDEADI 475
                    777777776.666*********99988743334444466666665 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   1.5e-17   2.9e-14       2      64 .]      22      84 ..      21      84 .. 0.98
   2 ?   -3.7   0.0       4.9   9.8e+03      52      63 ..     285     296 ..     283     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.5e-17
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                 +++y++L + I +g ++  ++LP+ r+La e++Vsr+tv  ++ +L++eg+++ r g+GtfV
  EHT99844.1 22 NKRLYDALQAAIQDGSIATATRLPASRDLARELAVSRNTVLAVYEQLQSEGYLQTRTGSGTFV 84
                5799**********************************************************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.9
                 TSEEEETTCEEE CS
        GntR  52 glverrqgrGtf 63 
                  l+er +++G  
  EHT99844.1 285 ELLERAKRSGSW 296
                 689999999975 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   1.8e-05     0.035      23      57 ..      46      80 ..      34      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESS CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLverrpgp 57
                + ++lar+l +s+ +v  + + L++ G++++r+g+
  EHT99844.1 46 ASRDLARELAVSRNTVLAVYEQLQSEGYLQTRTGS 80
                678*****************************986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.3   4.7e+03      29      38 ..      16      25 ..      14      25 .. 0.89
   2 ?   12.3   0.0   4.6e-05     0.091      21      47 ..      48      74 ..      46      75 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
      HTH_24 29 lSpstvnrrl 38
                lS +t+n+rl
  EHT99844.1 16 LSGGTLNKRL 25
                899****997 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.6e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                r+LA++l +S++tv++  ++L++eG++
  EHT99844.1 48 RDLARELAVSRNTVLAVYEQLQSEGYL 74
                89***********************97 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   4.2e-05     0.083      19      54 ..      43      77 ..       9      85 .. 0.76
   2 ?   -3.9   0.0       7.3   1.4e+04      24      33 ..     174     183 ..     174     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglisrg 54
                +lp + ++lA+ l ++r tv  +  +L+ eg+++++
  EHT99844.1 43 RLPAS-RDLARELAVSRNTVLAVYEQLQSEGYLQTR 77
                56655.59*************************954 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.3
                 HHHHHHHTTS CS
   HTH_Crp_2  24 qeelAsmlGl 33 
                 q+ lA++l +
  EHT99844.1 174 QQALADYLRV 183
                 6789999876 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     4e-05     0.081      26      64 ..      45      82 ..      26      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4e-05
                B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TC CS
        Rrf2 26 vsseeiaerqnispsylekilakLrkaglvksvrGkgGG 64
                 +s+++a++  +s++ +  + ++L+ +g+++++ G  G 
  EHT99844.1 45 PASRDLARELAVSRNTVLAVYEQLQSEGYLQTRTGS-GT 82
                5789*******************************9.55 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   9.8e-05       0.2      12      50 ..      38      76 ..      36      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
                -CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 12 laeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                +a+a++    ++lAr++++++ tv      L+ +Gy+++
  EHT99844.1 38 IATATRLPASRDLARELAVSRNTVLAVYEQLQSEGYLQT 76
                67777766889**************************86 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022      0.43      25      55 ..      47      77 ..      40      82 .. 0.89
   2 ?   -3.3   0.0       5.7   1.1e+04       7      13 ..     178     184 ..     173     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
                    HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress 25 tkdlaerLnvspssVsemlkkLekdGyveye 55
                      dla++L+vs  +V    + L+++Gy+++ 
      EHT99844.1 47 SRDLARELAVSRNTVLAVYEQLQSEGYLQTR 77
                    679*************************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.7
                     HHHHHHH CS
  Fe_dep_repress   7 EdYLetI 13 
                      dYL++I
      EHT99844.1 178 ADYLRVI 184
                     5999998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.8   5.6e+03      10      25 ..       9      25 ..       4      25 .. 0.58
   2 ?   10.1   0.1    0.0003       0.6      19      45 ..      48      73 ..      46      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.8
      HTH_11 10 leargp.isgeeLAeeL 25
                l++r   +sg +L ++L
  EHT99844.1  9 LAQRLAaLSGGTLNKRL 25
                34555556677666665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvp 45
                 +LA+eL vSr tv    ++L++ g  
  EHT99844.1 48 RDLARELAVSRNTVLAVYEQLQSEG-Y 73
                58************99999999999.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3449.88
//
Query:       EHT99845.1  [L=420]
Description: GABA aminotransferase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.1e-120  400.8   0.0   6.2e-120  400.6   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
     0.0043   16.3   0.0       0.11   11.7   0.0    2.1  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.6   0.0    7e-124  6.2e-120      11     406 .]      24     417 ..      14     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: 400.6 bits;  conditional E-value: 7e-124
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S.EEEEESSHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld.kvflansGseAvetAlKla 107
                  + + kae++ l+d +g++++D+ ++iav+n+Gh+hPkv++a+keq++ ++h+ f+++ +e++++laekl++ +p +   k+ ++ +G+eAve+A+K+a
   EHT99845.1  24 FYAVKAENATLWDHEGREIIDFSAGIAVLNTGHRHPKVIAAIKEQLDCFTHTAFQIVPYENYIALAEKLNARVPVNGPaKTTFFSTGAEAVENAVKIA 121
                  6778*****************************************************************8888873335******************* PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH..CHTCCCEEEEEE-SCET CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale..kkkkdevaAvivEpiqg 203
                  r+      at ++ iiaf+gafHGrt++++s+tg+ ++ykt+fgpf+  v ++ yp   +  + e     +le ++ +   + + ++vaA+i Epiqg
   EHT99845.1 122 RA------ATGRPGIIAFTGAFHGRTNMTMSLTGKVTPYKTGFGPFAGSVFHARYPNALHGCSVE----DALESVQTIFrcDISPQQVAAIIYEPIQG 209
                  **......************************************************977764444....45566666666689*************** PP

                  TTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC.TS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHH CS
  Aminotran_3 204 egGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha.gvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacav 300
                  egG++va+++f+++lr+lc++h++lli+DE+q+Gf+rTGklfA e++ +v+pDl+t+aK+l+gG+plsav ++ae+m+a  pg+ g+T++G p a a+
   EHT99845.1 210 EGGFNVAPAGFVTALRKLCDEHGILLIADEIQSGFARTGKLFASEYYsDVQPDLITMAKSLAGGMPLSAVSGRAEIMDAPLPGGLGGTYAGSPPAIAA 307
                  **********************************************99************************************************** PP

                  HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.....HHHHHHHHHCTEE-EEETT..TEEEE---TT-- CS
  Aminotran_3 301 alavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.....keilkkakekGvlilsaGd..nvirllppliit 391
                  alavle+i ee+l+e+a +lg +l e L+ +  +   +++vRg+G mia+e+ ++  + +     k+i ++a+++G+l+l++G   nvir+l pl+i 
   EHT99845.1 308 ALAVLEVIREENLCERALQLGGQLAETLKGAGCN--ALADVRGRGSMIAAEFCDSTGK-PradiaKAIQQAALDEGLLLLTCGVhgNVIRFLYPLTIP 402
                  ******************************9965..7***************999884.45899999999*************999************ PP

                  HHHHHHHHHHHHHHH CS
  Aminotran_3 392 deeidelleilkkal 406
                  d++ + +l+ l+++l
   EHT99845.1 403 DAQFRTALNLLNRIL 417
                  *********999986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0     0.006        54       3     121 ..      42     155 ..      40     159 .. 0.72
   2 !   11.7   0.0   1.2e-05      0.11     166     223 ..     217     270 ..     214     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.006
                    EEESSSSSTTSTTSS..HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EE CS
  Aminotran_1_2   3 vinLgsneylgdsgk..ptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdei 96 
                    +i+++++     +g+  p + +++k++ +    ++t+ ++ p++ + +l e+l   +         + ++  +++Ga a+ +a++ +  +     i
     EHT99845.1  42 IIDFSAGIAVLNTGHrhPKVIAAIKEQLD--CFTHTAFQIVPYENYIALAEKLNARVP-----VNGPAKTTFFSTGAEAVENAVKIARAATGRPGI 130
                    67777776555444434888888888888..777888888899988888888888888.....44466699999**99999999988844444458 PP

                    EEEESS-THHHHHHHHTTSEEEEEE CS
  Aminotran_1_2  97 lvpdptyasyknilrlsggevvryp 121
                    ++++  +   +n+    +g+v +y+
     EHT99845.1 131 IAFTGAFHGRTNMTMSLTGKVTPYK 155
                    8888777777777777777766665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.2e-05
                    -HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTT CS
  Aminotran_1_2 166 tleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgslsKaf 223
                    +   +++l +l++++++ll+ De+ +gf+ + + +++  +++v+++       +++K++
     EHT99845.1 217 PAGFVTALRKLCDEHGILLIADEIQSGFARTGKLFASEyYSDVQPDLI-----TMAKSL 270
                    56667788888********************88776655555555432.....555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3030.78
//
Query:       EHT99846.1  [L=421]
Description: permease component of an ABC superfamily spermidine/putrescine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-08   35.2  20.3      1e-08   35.2  20.3    2.1  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4      0.27   4.8e+03     160     171 ..      41      52 ..      31      65 .. 0.53
   2 ?   -1.9   0.0      0.13   2.3e+03      92     110 ..     155     173 ..     154     177 .. 0.80
   3 !   35.2  20.3   5.6e-13     1e-08       1     178 [.     220     410 ..     220     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.27
  BPD_transp_1 160 alviavlllnlv 171
                   a ++++++++++
    EHT99846.1  41 APLLIFVVVCFL 52 
                   333333333333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.13
  BPD_transp_1  92 asrwqifrkvvlPnalppi 110
                   +s+wq++++v+ P +  ++
    EHT99846.1 155 LSTWQTLKRVAKPYTSYYL 173
                   699*******999876555 PP

  == domain 3  score: 35.2 bits;  conditional E-value: 5.6e-13
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfv....laillvlvf................vilsilghlilpviillllsaapyvrlirraalr 77 
                   g++l++++a ++ +   +ll++++ +++++  +v    +    ++++                     l +   +v i ++  ++p+++l  +a+++
    EHT99846.1 220 GYPLAYWLA-KQPSNRANLLMIMVLLPFWTSLIVrtasW----IVLLqsgglinrtlmgtgliDSPLTLVFNRVGVYISMTHILLPFIVLPLYAVMK 311
                   689999999.9999999*****************64443....4444456799999999995534444557778899999999************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseisnggvlalviavlllnlvad 173
                    ++ ++v+aa  lGa ++  f++v +P+++  i +g++l+f+ ++g +v + +lg+    + + ++ +  ++ +++++   ++al+  +l+++++++
    EHT99846.1 312 GISPSYVRAAVSLGAHPFVAFWRVYVPQTFAGITAGALLVFMMAIGYYVTPALLGGPDDqMVSYFVAFFTNSTMNWGM---AAALGSQLLIIVTLLY 405
                   *******************************************************55446666666666666666555...5555555555555555 PP

  BPD_transp_1 174 ilqrl 178
                   +++  
    EHT99846.1 406 VVYSR 410
                   54443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2854.92
//
Query:       EHT99847.1  [L=286]
Description: permease component of an ABC superfamily spermidine/putrescine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-17   61.6  22.4    7.9e-17   61.6  22.4    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   7.9      0.35   6.2e+03      24      44 ..      23      56 ..      12      94 .. 0.48
   2 !   61.6  22.4   4.4e-21   7.9e-17       2     176 ..      97     274 ..      96     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.35
  BPD_transp_1 24 iivllslPsfvlaillvlvf.............v 44
                    ++l +P++v+++l + +               
    EHT99847.1 23 ALLFLIVPVLVIVPLSFNASsflsyplsgfslrW 56
                  4566777777777776654445555555555531 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 4.4e-21
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   ++lG+laa   ++  ++++ l++ +ii ++  P++++a+ ++++f+ l +l ++ l+++++ +l  +p+v++++ a+l+s +++l +aa  lGas+ 
    EHT99847.1  97 TVLGVLAAmglVRGDFRGKALVMAVIISPMVAPVVIIAVGMFFFFAKL-SLLNSYLGLVLAHALLGVPFVVITVVAVLKSYDTNLTRAAVSLGASPL 192
                   689*******999999********************999999777676.55668899999999999******************************* PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpG..lgtllleailgydyseisnggvlalviavlllnlvadilq 176
                     f+k +lP+++p +++g+++af+ ++ + v+++fl+s +   l  +++  i ++  + i+ +++ ++++a lll++v+ +l 
    EHT99847.1 193 LAFCKFTLPLIAPGVFSGALFAFATSFDEVVVTLFLASPTQrtLPIQMFAGIRENLDPTIA-AAATIMIAASLLLLIVMEVLR 274
                   *************************************765455555555555555555555.555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1962.46
//
Query:       EHT99848.1  [L=173]
Description: putative NUDIX hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-17   64.4   0.1    1.4e-17   64.0   0.1    1.2  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
        0.1   13.2   0.2        0.2   12.3   0.1    1.5  1  YbjQ_1    Putative heavy-metal-binding


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.1   1.5e-21   1.4e-17       2     116 ..      36     149 ..      35     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.5e-21
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEECS CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd..eheilyvfleeveg 94 
                 ++ra  +v+ ++ g++L++rr+  k+  +g  + + gG v+ gE+  e ArRE+eEE+G+   ++ + +       ++++++d  ++ +  +f +  +g
  EHT99848.1  36 RHRATYIVVHDGMGKILVQRRTeiKDFMQGkLDaTAGGVVQSGEDMLESARREAEEELGI--ADVPFAE------HGKFYFEDehCRVWGGLFSCVSHG 126
                 89********************999999997656**************************..8888888......4445555523444446777***** PP

                 GCSSTSTTTEEEEEEEEHHHH..H CS
       NUDIX  95 elepndenevsevrwvpleel..l 116
                   + + e+ev+e+ w++++e+   
  EHT99848.1 127 PFAMQ-EEEVDEIFWMTPDEItaR 149
                 ****9.***************433 PP

>> YbjQ_1  Putative heavy-metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.2e-05       0.2      26      65 ..      53      93 ..      38      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
      YbjQ_1 26 vrsrnvlkdilag.lrslvGGelkayeeeleeareeAlerl 65
                v+ r+ +kd+++g l   +GG +++ e++le+ar+eA e+l
  EHT99848.1 53 VQRRTEIKDFMQGkLDATAGGVVQSGEDMLESARREAEEEL 93
                666777899987549999*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1301.09
//
Query:       EHT99849.1  [L=213]
Description: putative glutathione S-transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-50  170.9   0.4    1.5e-50  170.5   0.4    1.2  1  GST_C_4   Glutathione S-transferase, C-terminal domain
    2.1e-14   53.7   0.0    3.6e-14   52.9   0.0    1.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    3.2e-11   43.4   0.0    5.1e-11   42.7   0.0    1.3  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    1.3e-10   41.5   0.0    2.2e-10   40.8   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
       0.15   12.1   1.2       0.42   10.7   0.2    1.9  2  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_4  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.4   4.1e-54   1.5e-50       1     115 [.      95     209 ..      95     211 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 4.1e-54
                 SHHHHHHHHHHHHHHHHS-HHHHHHT-CHHHHC--------HHHHHHHHHHHHHHHHHTTT--SSTTSS--HHHHHHHHHHHHHHTTT----HHHHHHH CS
     GST_C_4   1 dlekrararqiqawlrsdlmaireerptdvvfggakkadlsaegkasaekllavaeallvhgqqnlfgewsiadtdlalminrlvlhgdkvpealadya 99 
                 d ekrarar+iqawlrsdl +ir+erpt+v+f++ + a+ls +  ++a+kl+++ + ll  gqqnlfgewsiadtdla+m+nrl lhgd++p +l  ya
  EHT99849.1  95 DREKRARAREIQAWLRSDLLPIRQERPTEVLFAAERFAPLSPAALQAADKLISAVQRLLPEGQQNLFGEWSIADTDLAVMLNRLALHGDPLPARLQHYA 193
                 669************************************************************************************************ PP

                 HHHHT-HHHHHHHHHC CS
     GST_C_4 100 afqwqrasvqryials 115
                  fqwqrasvq +++ s
  EHT99849.1 194 EFQWQRASVQLWLTES 209
                 **********998776 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0     1e-17   3.6e-14       6      74 ..      15      86 ..      12      87 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1e-17
                TSHHHHHHHHHHHHHT--EEEE---TTTT...HHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-GG CS
     GST_N_3  6 aSpyarrvrlaLnekglpvevvevtpgeh...deellaknplgkvPvLeddgealtdSlaIidyLeelypgp 74
                +Spy++ v +aL+ekg+p+ v+ ++  ++   d++++  + + +vP+L+ d+ +l +S+aI++yLee+++ p
  EHT99849.1 15 FSPYVMSVYVALTEKGIPFSVRRIDLSQNqqlDDTYRSLSLTCRVPTLQVDEFMLSESSAICEYLEERFAAP 86
                8********************99985555557************************************9876 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.4e-14   5.1e-11       1      69 [.      15      81 ..      15      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.4e-14
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                ++P++  v +al +kg+++ +  ++l +++    +++  l+ ++ VP+L++ d   + eSs+I++yle+
  EHT99849.1 15 FSPYVMSVYVALTEKGIPFSVRRIDLSQNQQL-DDTYRSLSLTCRVPTLQV-DEFMLSESSAICEYLEE 81
                89*********************966555544.479**************9.78*************98 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     6e-14   2.2e-10       9      75 ..      14      80 ..       4      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 6e-14
                STSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  9 rgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYia 75
                + sp+++++ ++l +kg+++ v ++d++++++ ++ + +l    +vP+L+++++ l ES aI+eY++
  EHT99849.1 14 FFSPYVMSVYVALTEKGIPFSVRRIDLSQNQQLDDTYRSLSLTCRVPTLQVDEFMLSESSAICEYLE 80
                557999999******************9999988999999999**********************97 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.46   1.6e+03      53      68 ..      95     110 ..      77     111 .. 0.69
   2 ?   10.7   0.2   0.00012      0.42       6      48 ..     137     179 ..     117     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.46
                 S----TT-HHHHHHHH CS
     GST_C_2  53 gfdireaypnlraWle 68 
                 + + r+++  ++aWl+
  EHT99849.1  95 DREKRARAREIQAWLR 110
                 3377889999999986 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00012
                 HHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHH CS
     GST_C_2   6 raleqldaaldaleahLadspflfGdqptlaDialapflvrlr 48 
                 +al+++d+ ++a++++L  ++  +++++++aD  la++l rl 
  EHT99849.1 137 AALQAADKLISAVQRLLPEGQQNLFGEWSIADTDLAVMLNRLA 179
                 4899**************99977779*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1811.89
//
Query:       EHT99850.1  [L=299]
Description: NAD-dependent epimerase/dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-20   71.1   0.0    2.7e-19   69.6   0.0    1.7  1  Epimerase       NAD dependent epimerase/dehydratase family
    7.3e-18   64.1   0.0    1.3e-17   63.3   0.0    1.4  1  DUF1731         Domain of unknown function (DUF1731)
    1.4e-06   28.0   0.1     0.0027   17.1   0.0    3.0  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      2e-05   24.6   0.0      3e-05   24.0   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
     0.0012   18.5   0.1     0.0016   18.0   0.1    1.2  1  NmrA            NmrA-like family
     0.0022   17.2   0.0     0.0034   16.5   0.0    1.4  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.045   12.8   0.1      0.062   12.3   0.1    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
       0.13   11.4   0.4       0.51    9.5   0.3    1.9  2  NAD_binding_4   Male sterility protein


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.2e-22   2.7e-19       1     239 [.       3     222 ..       3     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.2e-22
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S..---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa..vggvaassedpadfieknlqgtln 97 
                 il+tG+tG+iG++l+ +l+++g+++ ++ r+  a ++ + e     ++ +  + a +  ++  ++davi+lA+  +++ +++  +++++ e+ +q+t +
  EHT99850.1   3 ILMTGGTGLIGRHLIPQLKARGHTISVVIRDVVAARETLGE-----NIAFWSGLAQQHSLD--GVDAVINLAGepIADKRWTEPHKQQLCESRWQITER 94 
                 89*****************************8888877766.....555555666666677..9*******9978999999999999************ PP

                 HHHHHHHHTCT.EEEEEEE.GGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTTS-TTSTTSHHHHHHHHH CS
   Epimerase  98 lleaarkagvk.rllflsS.sevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGprngegevsrvipalirki 193
                 +++ ++++    r+l  +S +  YG++ e+     +lt++ + ++ +  + l++ +   a++aq   ++++ lr   +           + ++++   +
  EHT99850.1  95 IASLINASTTPpRVLISGSaTGFYGNSGEV-----VLTEEDPGQNEFT-HTLCARWEQLALTAQSdRTRVCLLRTGVVLARE------GGALSKMKLPF 181
                 *****98844445555555499***99994.....3344445566666.456667777777777758999999999999988......88888888889 PP

                 HTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEE CS
   Epimerase 194 legkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyn 239
                  +g      lg+g++ +++++++D++++il++l+h   +d ++ yn
  EHT99850.1 182 RLGV--GGPLGSGKQYMPWIHIDDMVNGILWLLDH---DDCQGPYN 222
                 9986..6678*************************...45555555 PP

>> DUF1731  Domain of unknown function (DUF1731)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   5.8e-21   1.3e-17       1      47 []     250     296 ..     250     296 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 5.8e-21
     DUF1731   1 vPafalklllGemaellLegqrVlPkrLleaGFqFrypdleeALrdl 47 
                 +Pa a+kl++Ge + l+L+gq+VlPkrL++aGF+Fr+ dl +AL+d+
  EHT99850.1 250 TPASAIKLMMGESSVLVLGGQHVLPKRLEAAGFRFRWYDLHDALKDV 296
                 5********************************************95 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0027       1     146 [.       4     131 ..       4     136 .. 0.67
   2 ?    4.2   0.0     0.011        24     214     248 ..     189     224 ..     183     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L TG++G iG +l+ +L ++g+++ +++r+  + +    e+l         en+ + +g l  ++sl+       +d+v+nLA++   d+ +++P+
     EHT99850.1   4 LMTGGTGLIGRHLIPQLKARGHTISVVIRDVVAAR----ETLG--------ENIAFWSG-LAQQHSLDG------VDAVINLAGEPIADKRWTEPH 80 
                    78**********************99998765533....3433........35566665.444444443......488888888888888888887 PP

                    H..HHHHHTHHHHHHHHHHHHCT..TTSEEEEE.EEGGGG-S-SSSSB-TTS- CS
  GDP_Man_Dehyd  97 y..taevnvlGtlrLLeairalglekkvrfyqa.StsEvYGkvqevpqtEttp 146
                    +    e     t r+  +i a       r++++ S    YG+  ev  tE+ p
     EHT99850.1  81 KqqLCESRWQITERIASLINASTT--PPRVLISgSATGFYGNSGEVVLTEEDP 131
                    511455666666666666665543..345444404445788888888888877 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
                    CTTTT-EEEEEEHHHHHHHHHHHHHCSS.---EEE- CS
  GDP_Man_Dehyd 214 lGnldakRdwghvkDyveamwlmlqqdk.pedyvia 248
                    lG +++   w h++D+v+++  +l +d  +  y++ 
     EHT99850.1 189 LGSGKQYMPWIHIDDMVNGILWLLDHDDcQGPYNMV 224
                    7999999************87778776514555554 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-08     3e-05       1      77 [.       7      76 ..       7     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.3e-08
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg 77
                    G+tG +Gr+l+ +l ar gh++ +++R+   + e    e++   +g ++     ++ l+g+daV+  +g    d++ 
      EHT99850.1  7 GGTGLIGRHLIPQLKAR-GHTISVVIRDVVAARETL-GENIAFWSGLAQ-----QHSLDGVDAVINLAGEPIADKRW 76
                    9****************.5*********99998765.589999999887.....78899999999999877665544 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.3e-07    0.0016       1      33 [.       3      37 ..       3      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.3e-07
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt..k 33
                Il +G+TG +G++++  l ++gh++ +++Rd+   
  EHT99850.1  3 ILMTGGTGLIGRHLIPQLKARGHTISVVIRDVvaA 37
                899****************************8551 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0034       1      90 [.       1     100 [.       1     179 [. 0.62

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT........T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHH..THHHHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre........eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavn..aeavealA 86 
                    m+il+tG++G++G++L+ ql+++g+ +  + r+          +++  + +a+  +    d+v+n+A     Dk  +e+++++  +   + +e++A
     EHT99850.1   1 MHILMTGGTGLIGRHLIPQLKARGHTISVVIRDvvaaretlGENIAFWSGLAQQHSLDGVDAVINLAGEPIADKRWTEPHKQQLCEsrWQITERIA 96 
                    89**********************888877777778877775566666666666666678899999988888876555555444330045566666 PP

                    HHHH CS
  RmlD_sub_bind  87 eaaa 90 
                     + +
     EHT99850.1  97 SLIN 100
                    6544 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.8e-05     0.062       2      39 ..       5      42 ..       4      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelle 39
                +tGg+G +Gr+l+ +L  +++   v + D++   e+l 
  EHT99850.1  5 MTGGTGLIGRHLIPQLKARGHTISVVIRDVVAARETLG 42
                79***************************998887764 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00023      0.51       2      30 ..       6      32 ..       5      46 .. 0.81
   2 ?   -1.6   0.0      0.55   1.2e+03     184     217 ..     145     176 ..     142     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00023
                   E-TTSHHHHHHHHHHHHHS-.TEEEEEE- CS
  NAD_binding_4  2 TGaTGFLGkvLlekLLrttpevkiyllvR 30
                   TG+TG +G++L+ +L  +    +i +++R
     EHT99850.1  6 TGGTGLIGRHLIPQLKARGH--TISVVIR 32
                   **************987776..6777777 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.55
                    HHHHHHHHHHH---EEEEEE-EEE--SSST---T CS
  NAD_binding_4 184 EklvrearrrsglpvvivRpsiitgesktGwing 217
                    E+l  +a++  + +v+ +R +++++  + G++ +
     EHT99850.1 145 EQLALTAQSD-RTRVCLLRTGVVLA-REGGALSK 176
                    7777777755.88899999999988.33344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2341.24
//
Query:       EHT99851.1  [L=426]
Description: MFS family ribitol/xylitol/arabitol transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-31  108.2  86.9    7.7e-22   77.7  55.1    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0042   16.8   4.0     0.0042   16.8   4.0    2.8  4  DUF21     Cyclin M transmembrane N-terminal domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7  55.1   8.6e-26   7.7e-22       4     323 ..      19     342 ..      16     346 .. 0.85
   2 !   44.4  23.8   1.1e-15     1e-11      39     187 ..     267     418 ..     265     425 .. 0.82

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 8.6e-26
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa...sslwlllvlrvlqGl 97 
                 +a+ +++a + + +a+ + ++ +d g++p +  l++t+y+l+ a+a+   G++++ + + r +l+g++l++++ +l+++++    +++l+l++  + Gl
  EHT99851.1  19 VAIAIFMAGDGFEMAFLPrHI-TDMGFTPGQSALVFTCYGLAVALAAWASGVVAELITPQRAMLIGFVLWIVMhALFMSLGlglRNYPLMLLFYGIRGL 116
                 455555555555556656577.999************************************************888888545579999*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllll.peepperkrkspkeeekgtgpa 194
                 ++ +++ + + l++++ p+e+ + a+g++ a++s+G+ ++g  l +l++ slg +++ +++ +  + ++vl+++ l  ++  +++   p +e    + +
  EHT99851.1 117 AYPLFIYSFMMLLVQVLPRERLAAATGWFWAMYSVGIgVVGSYLPSLIIPSLGETGTLWLAIAWVACGGVLAFFSLrHVPVDRSRVHLPMRE----KMT 211
                 *************************************9***************999999999888888886444441444444444444555....667 PP

       MFS_1 195 plvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalgl 291
                 +++ a ++l+++++++ ++li ++ + + ++g+ + +pl+++++lg++ l + + + a++++v+++  +++g +  r+g+ r  +++++l+++l++l++
  EHT99851.1 212 EMSRAVTILFTNQHVFyACLIRIINT-LSLFGFAIIMPLLFVDRLGFT-LSEWLQIWAVFFFVTIFTNIFWGIMGERIGWiRQVRWFGCLGMALSSLAF 308
                 7777999******9974555555555.59999*******99*******.9999999************************9999*************** PP

       MFS_1 292 allavt..ssavllllvlvliGfglgfvfpslla 323
                 ++l+v+  ++ +++l++ v++G++++ ++p+ ++
  EHT99851.1 309 YYLPVYagHNFMVALIPAVMLGIFVAAFVPMTAV 342
                 ******99999999999999***88887777655 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 1.1e-15
       MFS_1  39 tlyalgaavaslplGrlsdrfG....rrrvlllglllfalg.lllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                 ++++++++++++++G +++r+G     r++ +lg++l++l+  +l+++a +++ + l+  v+ G++  a+f  + a++  + p  ++g ai++++++++
  EHT99851.1 267 AVFFFVTIFTNIFWGIMGERIGwirqVRWFGCLGMALSSLAfYYLPVYAgHNFMVALIPAVMLGIFV-AAFVPMTAVFPTLEPY-HQGAAISVYNLSAG 363
                 68999*****************7666666666666666666333333666776699**********7.7777778999998887.************** PP

       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 ++  ++p+++++l+  +   +v ++ ++++l+a+vl  + +++++p ++ ++++++
  EHT99851.1 364 MSNFVAPAIASMLLPFFDIVGVVWAYTGLYLFAGVL-TFIIRVPQPHHGAQRTARK 418
                 ***********************************7.5666777777777777666 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.2      0.23   2.1e+03      65     100 ..      60      94 ..      49     113 .. 0.72
   2 ?   -1.4   0.0      0.18   1.6e+03      50      93 ..     143     183 ..     129     196 .. 0.53
   3 !   16.8   4.0   4.7e-07    0.0042      18     128 ..     192     307 ..     174     343 .. 0.75
   4 ?   -3.4   0.5      0.75   6.8e+03      65      95 ..     367     401 ..     355     407 .. 0.43

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.23
       DUF21  65 illsalatalfvellaegalavviatvivtllilvf 100
                 ++l+a a+ +++el+++ + a++i +v+  +++ +f
  EHT99851.1  60 VALAAWASGVVAELITP-QRAMLIGFVLWIVMHALF 94 
                 55666666667777764.567777776667776666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.18
       DUF21  50 erlLstlligntlvnillsalatalfvellaegalavviatviv 93 
                  ++++   +g+ +v   l++l+ + ++e+   g+l+++ia v++
  EHT99851.1 143 GWFWAMYSVGIGVVGSYLPSLIIPSLGET---GTLWLAIAWVAC 183
                 44444444444444444444443333332...566666666554 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 4.7e-07
       DUF21  18 tAlvslsrlrl.eelaekgkkkakrllkllknpe.rlLstlligntlvnillsalatalfvellae...galavviatvivtllilvfgEilPkslalk 111
                 +  v ++r+r+   ++ek ++ ++++  l  n++ ++ + + i ntl+ ++ ++++ +lfv+ l+    ++l++++++++vt+++ +f  i+  +++  
  EHT99851.1 192 LRHVPVDRSRVhLPMREKMTEMSRAVTILFTNQHvFYACLIRIINTLSLFGFAIIMPLLFVDRLGFtlsEWLQIWAVFFFVTIFTNIFWGIMGERIGWI 290
                 334556666665335555556666666666666516677889********************9988999999999999999***********9999988 PP

       DUF21 112 yaekialalapplrvlm 128
                 ++ ++   l   l+ l 
  EHT99851.1 291 RQVRWFGCLGMALSSLA 307
                 87777666555555555 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 0.75
       DUF21  65 illsalatal..fvellae.....galavviatvivtl 95 
                 ++++a+a+ l  f   +         ++++++  ++t+
  EHT99851.1 367 FVAPAIASMLlpF---FDIvgvvwAYTGLYLFAGVLTF 401
                 4444444333221...1111112222333334344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3134.36
//
Query:       EHT99852.1  [L=487]
Description: xylulose kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-80  269.3   0.1    4.2e-80  268.8   0.1    1.2  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    9.6e-33  113.6   0.1      2e-32  112.5   0.1    1.5  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
     0.0021   17.6   0.0       0.55    9.7   0.0    2.2  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.8   0.1   7.1e-84   4.2e-80       1     245 []       1     243 [.       1     243 [. 0.99

  Alignments for each domain:
  == domain 1  score: 268.8 bits;  conditional E-value: 7.1e-84
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 ++lg+D+Gt+ +ka++l+++g++vas++a l++++p++ waeq p+ +w+a++++++ + +qa    + + aIg sgq++g+vllD+++  L+++ilw+
  EHT99852.1   1 MYLGIDIGTSELKALILNAQGDIVASEHATLQVQRPHPHWAEQHPHDWWHACQQVMARLRQQAPQAWSAVTAIGLSGQMHGAVLLDEQGDILRPCILWN 99 
                 89*************************************************************9999******************************** PP

                 --TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 100 drrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgi 198
                 d+r+a++++ l++     ++ +++g+++++gft+ kl+W++++ep  f +i k+ll++dyL+wrLtg  vtd ++a+++ ++++++++w++ lla++g+
  EHT99852.1 100 DTRSAAECNWLHQ--HHPEMMQISGNMIMPGFTAPKLRWVAQHEPACFSRISKVLLPKDYLRWRLTGRWVTDPSDAAGTLWLDVATRDWSDALLAATGL 196
                 ***********99..8999******************************************************************************** PP

                 -GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 peelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                  +++LP++ve++++ g+l+p la ++Gl   v+v+ggggD++ +a+G
  EHT99852.1 197 RRKQLPEIVEGNAVSGTLRPDLAREWGLSTAVIVAGGGGDNATSAVG 243
                 *********************************************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.1   3.3e-36     2e-32       1     197 [.     252     438 ..     252     439 .. 0.90

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 3.3e-36
      FGGY_C   1 akvslGTssflllvg....tkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpaf 95 
                 a +slGTs ++++v+     +p   +h++++ ++     + ++ +  +  a s + w+++ l +      +++  ++l++ a+++  ++ + ++f+p++
  EHT99852.1 252 AFISLGTSGVIFVVNdrlrADPQSGVHAFCHALP-----GRWHQMSVMLSAASCLRWVCQLLSV------SEN--QLLEDVAELSPTQKQRAPLFLPYL 337
                 579**********652333455577888888888.....99********************666......444..5777788999999*********** PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilA 194
                 sg+r+p++dpda g++ +l+++t+ a + +A+le+va++l+++l  l +  ++++++  ++GGg+++ l++ql+Ad+l  pV++++  +++alGaA lA
  EHT99852.1 338 SGERTPHNDPDATGAFYDLRHETQRALLGYAVLEGVAFGLADGLAVLGDG-RQDITQFSLTGGGARSSLWAQLIADVLDSPVVTHPASASGALGAARLA 435
                 ***********************************************666.999********************************************* PP

      FGGY_C 195 ava 197
                  +a
  EHT99852.1 436 WLA 438
                 887 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   9.3e-05      0.55       1      29 [.       3      31 ..       3     210 .. 0.83
   2 !    6.2   0.0    0.0011       6.4     193     267 .]     368     435 ..     352     435 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.3e-05
                 EEEEE-SSEEEEEEEETTTEEEEEEEE-- CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitns 29
                 +GiD+G++  ka +++ +g++++   ++ 
   EHT99852.1  3 LGIDIGTSELKALILNAQGDIVASEHATL 31
                 8*******************877665544 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0011
                  HHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 193 dIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  ++l+g++  +a+ ++ l    +++t+ + ltGG a+++   + +      ++++ ++ ++p ++  galGAa +A
   EHT99852.1 368 AVLEGVAFGLADGLAVLGDGRQDITQ-FSLTGGGARSSLWAQLI-----ADVLDSPVVTHP-ASASGALGAARLA 435
                  68888888889988888888888875.**********5555444.....556665665566.5578*****9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3669.43
//
Query:       EHT99853.1  [L=324]
Description: putative transcriptional regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-67  225.4   0.0    9.1e-67  224.9   0.0    1.2  1  Sugar-bind    Putative sugar-binding domain
    2.5e-05   23.9   1.2    6.4e-05   22.6   0.3    2.1  2  HTH_23        Homeodomain-like domain
    2.7e-05   24.0   0.1    0.00011   22.0   0.1    2.1  2  MarR_2        MarR family
    0.00028   20.4   0.1    0.00064   19.2   0.1    1.6  1  Sigma70_r4    Sigma-70, region 4
    0.00032   20.3   0.1    0.00084   19.0   0.1    1.7  1  Sigma70_r4_2  Sigma-70, region 4
    0.00043   20.2   0.0      0.001   19.0   0.0    1.6  1  HTH_Crp_2     Crp-like helix-turn-helix domain
    0.00056   19.9   0.2     0.0015   18.5   0.2    1.7  1  HTH_3         Helix-turn-helix
     0.0032   17.0   0.1     0.0066   16.0   0.1    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0099   16.2   1.3      0.024   15.0   0.1    2.2  2  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.067   13.1   0.0    1.5  1  HTH_11        HTH domain
      0.038   14.1   1.1      0.095   12.8   0.5    2.0  2  HTH_28        Helix-turn-helix domain
      0.044   13.8   0.1      0.093   12.8   0.1    1.6  1  HTH_29        Winged helix-turn helix
      0.052   13.2   1.2      0.098   12.3   0.2    2.0  2  Crp           Bacterial regulatory proteins, crp family
      0.053   13.3   0.0       0.15   11.9   0.0    1.8  1  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9   0.0   7.1e-70   9.1e-67       1     255 []      58     314 ..      58     314 .. 0.98

  Alignments for each domain:
  == domain 1  score: 224.9 bits;  conditional E-value: 7.1e-70
                 CCCCCHHHHHHHHHHHHT-SEEEEESSTSTT.CHHHHHHHHHHHHHHHHH--TTE..EEEE-SSHHHHHHHHHTHHCCHTCEEEEESBSECSSCHCGSH CS
  Sugar-bind   1 selaelleleerLkekfglkeaivvpddade.edvlealgraaaqllesllkdgd..vvgvgwGrtlsavaealtpkslrdvkvvqliGglsekvsaev 96 
                 ++++++l+l+ +++e+fgl++++vvp+ + +   +++ l+ ++a+++++ ++d++  v g+g+G+tl+a+++al+  + +++++v++iG++ ++ s + 
  EHT99853.1  58 HPVTHCLRLAHAVQEAFGLQHCRVVPSAGLDdHAIQQMLAVEGAEVMSQFINDDQpqVFGIGSGKTLRAIIDALPWVERPQHQCVSMIGAIARDDSGTR 156
                 5899*************************887999*****************99999****************************************** PP

                 HHHHHHHHHHCTSEEE--SSBSB-SSHHHHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCCCCHHHCCTTS-HHHHHHHHHTTEEEEETTEEEETTS-B CS
  Sugar-bind  97 nevvarlAqklggeyellpaPavlssaelreallaersikevlelakkadvalvGiGsaseeaklvkrgflteeelaelreegaVGeilgrffDaeGev 195
                 ++v  +l++k++g+y ++paP++++s+e ++++++ ++ ++v++ a +a++++ GiG+++   +l + gf+t++++++l+++g+VGe+lg+ff+++Ge 
  EHT99853.1 157 YDVPLKLSEKMQGKYFFIPAPLYADSPEDKQMWCQHQVYQRVVSRALQASMTFLGIGEVTPGCPLHAEGFITDSQVQALNARGVVGEMLGHFFNQQGER 255
                 *************************************************************************************************** PP

                 CCHCHCCCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTTS-SEEEEEHHHHHHHHC CS
  Sugar-bind 196 vetelnerviglsledlrkipkviavAggesKaeAilaaLrgglinvLitdestAkalLa 255
                 v  e++  +++++le+  + + +i+ Agge+K++Ai+aaL+gg+i +L+tdestA +lL+
  EHT99853.1 256 VMGETDALLTSVTLESR-TTRPIIGFAGGERKFAAIRAALTGGWISGLVTDESTATRLLS 314
                 ***************66.999*************************************95 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.3     5e-08   6.4e-05       6      43 ..      10      48 ..       3      53 .. 0.86
   2 ?   -2.7   0.0       4.6   5.9e+03       6      18 ..     285     298 ..     284     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5e-08
      HTH_23  6 eRlrillllae.GlsvreIAreLgvsrrTvyrwlkryre 43
                  +r+++++ + Gl+++eIAr+Lg sr+  +r ++  re
  EHT99853.1 10 LAARAAWMYYVaGLTQQEIARALGLSRQVAQRLISGARE 48
                558899999999******************999987665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.6
      HTH_23   6 eRlrillllae.Gl 18 
                 +++ ++++++  G+
  EHT99853.1 285 RKFAAIRAALTgGW 298
                 79999999998666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   8.8e-08   0.00011      19      52 ..      22      53 ..      11      60 .. 0.90
   2 ?   -3.3   0.0       6.8   8.7e+03      32      42 ..      86      96 ..      85      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 8.8e-08
                TSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 19 grdltvgelarrlglsksavsrilkrLvaaGLve 52
                g  lt++e+ar+lgls++ ++r++  + + G+v 
  EHT99853.1 22 G--LTQQEIARALGLSRQVAQRLISGAREMGMVS 53
                6..9**************************9996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.8
                TSSHHHHHHHH CS
      MarR_2 32 glsksavsril 42
                gl+ +a++++l
  EHT99853.1 86 GLDDHAIQQML 96
                79999**9998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1     5e-07   0.00064      15      44 ..      17      46 ..      16      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5e-07
                HHHTTT--HHHHHHHHTS-HHHHHHHHHHH CS
  Sigma70_r4 15 lrfgeglTleEIgerlgiSrerVrqiekrA 44
                ++++ glT++EI++ lg+Sr  + ++++ A
  EHT99853.1 17 MYYVAGLTQQEIARALGLSRQVAQRLISGA 46
                799*****************9887777665 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   6.5e-07   0.00084      21      51 ..      17      47 ..      12      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.5e-07
                  HHHTS---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2 21 lryleglsykEIAellgisegtVksrlsRAr 51
                  ++y+ gl+++EIA+ lg+s +  ++ +s Ar
    EHT99853.1 17 MYYVAGLTQQEIARALGLSRQVAQRLISGAR 47
                  99******************99999998877 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     8e-07     0.001      21      53 ..      22      54 ..       8      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8e-07
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                 ltq+e+A+ lGl+r+   r++s  ++ g++s 
  EHT99853.1 22 GLTQQEIARALGLSRQVAQRLISGAREMGMVSV 54
                59***************************9983 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   1.2e-06    0.0015       8      34 ..      21      47 ..      21      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
                TTHHHHHHHHHHTSSHHHHHHHHTTSS CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnGer 34
                +gl+q+e+A++lG+sr+  +r+++G r
  EHT99853.1 21 AGLTQQEIARALGLSRQVAQRLISGAR 47
                59**********************965 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.2e-06    0.0066      16      39 ..      21      44 ..      21      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.2e-06
      HTH_24 16 prisqreLAerlglSpstvnrrlk 39
                ++++q+e+A++lglS++   r + 
  EHT99853.1 21 AGLTQQEIARALGLSRQVAQRLIS 44
                689**************9988776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.8e-05     0.024      13      39 ..      21      47 ..       7      70 .. 0.87
   2 ?   -1.7   0.1         3   3.8e+03      20      38 ..     288     306 ..     282     311 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
      HTH_31 13 aGLsqeevAerlgvsestlsrlEqGrr 39
                aGL+q+e A++lg+s+    rl +G+r
  EHT99853.1 21 AGLTQQEIARALGLSRQVAQRLISGAR 47
                4********************999998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3
      HTH_31  20 vAerlgvsestlsrlEqGr 38 
                 +A r+ ++  ++s l + +
  EHT99853.1 288 AAIRAALTGGWISGLVTDE 306
                 7889999999999887755 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.2e-05     0.067      16      46 ..      23      56 ..      21      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
      HTH_11 16 isgeeLAeeLnvSrrtvrrdIkaLeelg...vpI 46
                ++ +e+A+ L++Sr++ +r I   +e+g   v+I
  EHT99853.1 23 LTQQEIARALGLSRQVAQRLISGAREMGmvsVKI 56
                799*********************9999766666 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   7.4e-05     0.095       7      38 ..      17      48 ..      12      52 .. 0.88
   2 ?   -2.3   0.0       4.1   5.2e+03       4      40 ..     288     297 ..     285     305 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.4e-05
      HTH_28  7 kllaaGhsvreaArelgisrrtvyrWikryee 38
                +++ aG ++ e+Ar+lg+sr+  +r+i+  +e
  EHT99853.1 17 MYYVAGLTQQEIARALGLSRQVAQRLISGARE 48
                5789999**************99999988876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWikryeegG 40 
                  +i++++                           +gG
  EHT99853.1 288 AAIRAAL---------------------------TGG 297
                 5555544...........................444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.3e-05     0.093      10      34 ..      21      44 ..      10      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.3e-05
      HTH_29 10 eGvstvsqiAkllglsrrtvyrwlk 34
                 G+ t ++iA++lglsr+  +r + 
  EHT99853.1 21 AGL-TQQEIARALGLSRQVAQRLIS 44
                355.9****************9985 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   7.7e-05     0.098       3      23 ..      23      43 ..      22      52 .. 0.80
   2 ?   -2.0   0.1       2.3   2.9e+03      18      25 ..     308     315 ..     308     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
                --HHHHHHHHTS-HHHHHHHH CS
         Crp  3 mSRqdIAdylGlTrETVSRlL 23
                ++ q+IA++lGl+r  + Rl 
  EHT99853.1 23 LTQQEIARALGLSRQVAQRLI 43
                799**********98777775 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                 HHHHHHHH CS
         Crp  18 TVSRlLtr 25 
                 T++RlL++
  EHT99853.1 308 TATRLLSD 315
                 89****86 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.15      17      36 ..      19      38 ..      14      44 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
      HTH_38 17 laeGlslreIArrLgrspsT 36
                + +Gl++ eIAr Lg s++ 
  EHT99853.1 19 YVAGLTQQEIARALGLSRQV 38
                679************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2491.57
//
Query:       EHT99854.1  [L=257]
Description: ATP-binding component of an ABC superfamily histidine/lysine/arginine/ornithine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-33  115.5   0.0    3.6e-33  115.0   0.0    1.2  1  ABC_tran      ABC transporter
    2.9e-12   47.0   0.1    2.4e-06   27.6   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.3e-07   31.3   0.8    1.1e-06   28.3   0.8    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00014   21.6   0.1    0.00025   20.7   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
    0.00014   21.7   0.0      0.012   15.3   0.0    2.1  2  AAA_15        AAA ATPase domain
     0.0018   17.1   0.0       0.13   10.9   0.0    2.1  2  AAA_13        AAA domain
     0.0036   17.7   0.0     0.0075   16.7   0.0    1.6  1  AAA_16        AAA ATPase domain
     0.0051   15.7   0.0       0.54    9.0   0.0    2.3  2  ABC_ATPase    Predicted ATPase of the ABC class
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.019   14.7   0.0    1.5  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.015   15.8   0.2      0.027   14.9   0.2    1.3  1  AAA_23        AAA domain
      0.028   13.6   0.0      0.031   13.4   0.0    1.2  1  G-alpha       G-protein alpha subunit
      0.036   14.2   0.1       0.07   13.3   0.1    1.8  1  AAA_33        AAA domain
      0.043   13.5   0.1       0.18   11.5   0.0    2.0  2  AAA_24        AAA domain
      0.053   13.4   0.0       0.37   10.7   0.0    2.3  3  NACHT         NACHT domain
      0.068   13.1   0.1       0.14   12.1   0.1    1.5  1  RsgA_GTPase   RsgA GTPase
      0.069   13.2   0.1      0.088   12.9   0.1    1.3  1  DUF87         Helicase HerA, central domain
       0.09   13.1   0.4       0.43   10.8   0.1    2.1  2  AAA_22        AAA domain
       0.11   11.9   0.0        0.3   10.4   0.0    1.7  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.19   11.8   0.4       0.37   10.8   0.2    1.8  2  Dynamin_N     Dynamin family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   3.8e-36   3.6e-33       1     137 []      21     181 ..      21     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 3.8e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.............B-HHHCCHCEEEE-SS--S-TTSBHHHH....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.............qeleslrkeigvlpqepqlfpeltvren....... 79 
                 lk vsl+ ++g ++ i+G++G+GKSt+l+++  l+kp eG+i+++++ ++              ++l+ lr ++ +++q+ +l++++tv en       
  EHT99854.1  21 LKGVSLHANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGTITVNNTAISLvrdtdgqlkvadkEQLRLLRTRLTMVFQHFNLWSHMTVLENvmeapiq 119
                 799*********************************************999999*********999********************************* PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                      + +  e a++ l+ ++++++ +++ p +LSgGq+qrv++aral+ +p++ll+DEpt+
  EHT99854.1 120 vlglSKAQARECAVTYLNKVGIDERAQSKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181
                 **98444444555555555556667777789*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.8e-06    0.0026       3      22 ..      35      54 ..      33      85 .. 0.79
   2 !   27.6   0.0   2.5e-09   2.4e-06     235     298 ..     151     211 ..     118     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                 +iG  gsGKS++L+++ +l
  EHT99854.1 35 SIIGSSGSGKSTFLRCINFL 54
                59*****************9 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 2.5e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                  +lS G+++   ++ al+  +    +ll+DEp + L+P+l+ ++l+++ +l+++g   +++TH 
  EHT99854.1 151 VHLSGGQQQRVSIARALAMEP---EVLLFDEPTSALDPELVGEVLRIMQKLAEEGKTMVVVTHE 211
                 678888888877777777777...9***********************8888879999*****6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.8   1.1e-09   1.1e-06      26     208 ..      33     221 ..      12     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.1e-09
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--........BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk........skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk 116
                 + +i+G+ GSGKs +l  i F+   ++ +   ++++ +l+           ke+ ++ + +++++f++ +       +++++  +v++   +   + + 
  EHT99854.1  33 VISIIGSSGSGKSTFLRCINFLEKPSEGTITVNNTAISLVRDtdgqlkvaDKEQLRLLRTRLTMVFQHFNLW-----SHMTVLENVMEAPIQVLGLSKA 126
                 678****************99766555544444455577777666665555667777788888888777776.....4455555555555545555555 PP

                 EE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                 ++++  v   l+++gi++         LSgG+++ v++a  +A++   p+ + l+De  +aLD + v +v +++++  ++   ++v++++ e+ +++++
  EHT99854.1 127 QARECAV-TYLNKVGIDERaqskypvHLSGGQQQRVSIARALAME---PE-VLLFDEPTSALDPELVGEVLRIMQKLAEEgKTMVVVTHEMEFARHVSS 220
                 5554444.356666666666666666*************999875...55.569*********************999984667788888887776655 PP

                 E CS
                 x RF
       SMC_N 208 l 208
                  
  EHT99854.1 221 H 221
                 4 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   2.7e-07   0.00025      15      58 ..      24      68 ..      17      70 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.7e-07
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAiqalLvpak.kvrfNkaa 58
                 +++ +  +++ ++G sGsGKST+l  i++l  p++ +++ N+ a
  EHT99854.1 24 VSLHANAGDVISIIGSSGSGKSTFLRCINFLEKPSEgTITVNNTA 68
                556666555999*************99999988888777777655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.012      23      68 ..      32      72 ..      21     150 .. 0.76
   2 ?    4.9   0.0     0.019        18     324     365 ..     171     211 ..     152     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
      AAA_15 23 eeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleif 68
                + +  +iG  +sGKS++l+ ++++ + +    + +i++++  ++  
  EHT99854.1 32 D-VISIIGSSGSGKSTFLRCINFLEKPS----EGTITVNNTAISLV 72
                4.889*****************999988....44455554444444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.019
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 + +ll++EP   L p++  ++ + +++la+++k   ++ TH 
  EHT99854.1 171 PEVLLFDEPTSALDPELVGEVLRIMQKLAEEGK-TMVVVTHE 211
                 5789****************************9.67778885 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.013        12      21      46 ..      36      61 ..      32     130 .. 0.74
   2 !   10.9   0.0   0.00014      0.13     526     580 ..     170     221 ..     160     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
      AAA_13 21 iYGwNGaGKTtLSrllrslelgetep 46
                i G+ G+GK+t+ r ++ le+ +  +
  EHT99854.1 36 IIGSSGSGKSTFLRCINFLEKPSEGT 61
                56999**************8755433 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 + ++  +D P S LD + +  v   +++ +   ++ k + + TH +ef + v+ +
  EHT99854.1 170 EPEVLLFDEPTSALDPELVGEVLRIMQKLA---EEGKTMVVVTHEMEFARHVSSH 221
                 78899************************9...9****************99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.9e-06    0.0075      21     127 ..      28     195 ..      18     231 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.9e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy......sa.laqalareellrqlldeaesaeleawrekleeala...... 106
                 ++ + ++ ++G sG+GKs+ +r++   lek      +g+ + + +ai++      +  +a+   + +llr  l++               +++      
  EHT99854.1  28 ANAGDVISIIGSSGSGKSTFLRCIN-FLEKP----SEGTITVNNTAISLvrdtdgQLkVADKE-QLRLLRTRLTM---------------VFQhfnlws 105
                 44457899****************9.89999....7777777744444433332222233333.22344444444...............222333333 PP

      AAA_16 107 .........................................................................avpelagaeasrllellkrll 127
                                                                                          ++++l+++    l  ++ r++
  EHT99854.1 106 hmtvlenvmeapiqvlglskaqarecavtylnkvgideraqskypvhlsggqqqrvsiaralamepevllfdePTSALDPE----LVGEVLRIM 195
                 333333444455555555555555555556666666666666666666666555555555555555555444444444444....444444444 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013        12     244     264 ..      30      51 ..       5      53 .. 0.78
   2 !    9.0   0.0   0.00057      0.54     324     353 ..     154     183 ..     134     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
                 SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAl 264
                  G v+ I+G+   GKsT L+ +
  EHT99854.1  30 AGdVISIIGSSGSGKSTFLRCI 51 
                 45799**************988 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00057
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAt 353
                 SG   q ++i++al ++ ++lL+DE tsA 
  EHT99854.1 154 SGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
                 99999***********************95 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     2e-05     0.019       1      39 [.      33      70 ..      33     103 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsfl 39
                vI++ gsSG+Gk+t+ r ++  +++ +  + +++ +++ 
  EHT99854.1 33 VISIIGSSGSGKSTFLRCIN-FLEKPSEGTITVNNTAIS 70
                8**************99885.444444444444444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   2.9e-05     0.027      21      41 ..      33      53 ..      21      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-05
      AAA_23 21 ltlItGpNGaGKTTildAikl 41
                +  I+G  G+GK+T+l++i +
  EHT99854.1 33 VISIIGSSGSGKSTFLRCINF 53
                567****************87 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.3e-05     0.031      26      50 ..      34      58 ..      16     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
                EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg 50
                + ++G+s+SGKsT+l+ + +l+k++
  EHT99854.1 34 ISIIGSSGSGKSTFLRCINFLEKPS 58
                6789****************99987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.4e-05      0.07       1      24 [.      33      58 ..      33     221 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-05
      AAA_33  1 lvllvGlpGsGKstlaerl..lkklg 24
                ++ ++G +GsGKst+++ +  l+k  
  EHT99854.1 33 VISIIGSSGSGKSTFLRCInfLEKPS 58
                67799**********99644344433 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.18       4      23 ..      33      54 ..      30     128 .. 0.79
   2 ?   -0.7   0.1       1.1     1e+03     110     132 ..     190     212 ..     186     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_24  4 kiliyGpsgiGKTtlakel..g 23
                 i i+G+sg+GK+t+++ +   
  EHT99854.1 33 VISIIGSSGSGKSTFLRCInfL 54
                5789************988441 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
      AAA_24 110 efrrllkklqelrknvifiahek 132
                 e+ r+++kl e +k+ +++ he 
  EHT99854.1 190 EVLRIMQKLAEEGKTMVVVTHEM 212
                 77899999999999888888886 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.37       2      20 ..      33      51 ..      32      59 .. 0.88
   2 ?   -1.6   0.0       2.4   2.2e+03     136     163 ..     111     136 ..      89     138 .. 0.78
   3 ?   -1.5   0.0       2.3   2.1e+03      12      51 ..     202     236 ..     201     253 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                ++ + G +GsGK+t+l+ +
  EHT99854.1 33 VISIIGSSGSGKSTFLRCI 51
                7889************977 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.4
                 CTTSSCE..EEEE--TCCHHHHHHHHCT CS
       NACHT 136 eeqleeaivlevegfsesrrkqlvrkyf 163
                 e  +e +  ++v g+s+ ++++++  y+
  EHT99854.1 111 ENVMEAP--IQVLGLSKAQARECAVTYL 136
                 4445555..8999999999999988776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.3
                 CHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.. CS
       NACHT  12 GKTtLlqklalawaegklpqgafklvFflslrelsrsgna 51 
                 GKT+ +    ++ a+        ++v+fl++++++++g+ 
  EHT99854.1 202 GKTMVVVTHEMEFARHV-----SSHVIFLHQGKIEEQGPP 236
                 66666655555555555.....467888999888888766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00014      0.14      98     120 ..      30      52 ..       5      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                  TTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinall 120
                  +++++ ++G+SG GKSt++  ++
   EHT99854.1  30 AGDVISIIGSSGSGKSTFLRCIN 52 
                  3488999***********98765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.3e-05     0.088      26     108 ..      34     112 ..      24     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.3e-05
       DUF87  26 lAilgsTGsGKSntvavL..leelle.....kkgatililDpHGEYgkalekllsekvkvitpspsakdkelkinpwsldpeelldllee 108
                 + i+gs+GsGKS++ + +  le+  e      + a  l+ D +G  + a+    +e+++++++       +l++ +++++ + ++++le 
  EHT99854.1  34 ISIIGSSGSGKSTFLRCInfLEKPSEgtitvNNTAISLVRDTDGQLKVAD----KEQLRLLRT-------RLTMVFQHFNLWSHMTVLEN 112
                 579************99843444444777666666668888888888888....888888887.......48888888888888777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00046      0.43       7      25 ..      33      51 ..      28     102 .. 0.81
   2 ?   -0.2   0.0       1.2   1.1e+03      91     112 ..     169     191 ..     124     225 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00046
      AAA_22  7 ilvvtGesGtGKTtllrrl 25
                ++ ++G sG+GK+t lr +
  EHT99854.1 33 VISIIGSSGSGKSTFLRCI 51
                789***********99965 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.2
      AAA_22  91 v.ielliiDEaqh.lrseealeeL 112
                 + +e+l+ DE    l  +e++ e+
  EHT99854.1 169 MePEVLLFDEPTSaL-DPELVGEV 191
                 144555555544444.22222222 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00032       0.3       7      73 ..      16      82 ..      10      96 .. 0.80
   2 ?   -1.5   0.0       1.5   1.4e+03     175     196 ..     143     164 ..     126     211 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekll 73
                  G++e  + + + a  g  + ++G++GsGK+   ++++ l  p + + +++ ++i+ v +++ + k+ 
    EHT99854.1 16 GEHEVLKGVSLHANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGTITVNNTAISLVRDTDGQLKVA 82
                  77777778888888888999*****************999999999999999988777766665555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
  Mg_chelatase 175 ekeierYlsklsgplldRidlq 196
                   e+++++Y  +lsg    R+ + 
    EHT99854.1 143 ERAQSKYPVHLSGGQQQRVSIA 164
                   5566666666666666666654 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00039      0.37       1      55 [.      34      83 ..      34     162 .. 0.82
   2 ?   -2.9   0.0       6.7   6.3e+03     146     165 ..     190     209 ..     185     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSE CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeel 55
                i ++Gs  sGKS++l  +   +    +++ +T + + ++l ++ + +    k+  
  EHT99854.1 34 ISIIGSSGSGKSTFLRCINFLE--KPSEGTITVNNTAISLVRDTDGQ---LKVAD 83
                789************9886655..34677777777778877777733...33333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.7
                 CHHHHHHHHSTTBTTEEEEE CS
   Dynamin_N 146 ealflarevdpkgkrtivvl 165
                 e+l++ +++ ++gk ++vv 
  EHT99854.1 190 EVLRIMQKLAEEGKTMVVVT 209
                 56777888888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 1798.38
//
Query:       EHT99855.1  [L=238]
Description: membrane component of an ABC superfamily histidine/lysine/arginine/ornithine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-14   52.7  13.8    4.2e-14   52.7  13.8    1.4  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.13   11.7   1.0       0.21   11.1   1.0    1.4  1  Stevor        Subtelomeric Variable Open Reading frame


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7  13.8   4.7e-18   4.2e-14       4     176 ..      40     221 ..      33     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 4.7e-18
  BPD_transp_1   4 lGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilp.viillllsaapyvrlirraalrslpkdlveaa 87 
                   +++l+a   +++n++++  +  +++v++++P +v +++++             +l+++  + l   +++++l + +y++ i+++a+r++p++ +eaa
    EHT99855.1  40 MAVLLAiarVSPNRFISLPVWLFTYVFRGTPLYVQLLVFYSGMytleivkgtELLNAFFRSGLNcTLLAFTLNTCAYTTEIFAGAIRAVPHGEIEAA 136
                   566666889*************************8888776667889999995555566555555******************************** PP

  BPD_transp_1  88 ralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilq 176
                   ra+G s+++++r ++lP+al+++++   + ++++l  ++l+ + +    + +ll  a  ++  ++  ++++ ++++++l+++  +  l 
    EHT99855.1 137 RAYGFSTFKLYRCIILPSALRTALPVYSNEVILMLHSTALAFTAT----VPDLLKIARDINAATYQPFTAFGIAAVLYLIISYTLISLF 221
                   ********************************9999888887777....6777766666666665553333333333333443344444 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   2.4e-05      0.21     202     260 ..     173     227 ..     133     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.4e-05
      Stevor 202 esslesalkaavsaaaasdlagtaasaassafepygiaalvllilavvliiLYiwlyrR 260
                 +++l+     ++++  + ++a  + +a+ + f+++giaa++ li++  li L+    rR
  EHT99855.1 173 STALA----FTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYTLISLFRLAERR 227
                 33332....3444445555666667777788999****************999654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1817.22
//
Query:       EHT99856.1  [L=228]
Description: membrane component of an ABC superfamily histidine/lysine/arginine/ornithine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-23   82.4  13.3      4e-23   82.1  13.3    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.29    9.5   9.0       0.24    9.8   2.2    2.0  2  DcuC          C4-dicarboxylate anaerobic carrier


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1  13.3   4.5e-27     4e-23       2     184 ..      28     220 ..      27     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 4.5e-27
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilg.hlilpviillllsaapyvrlirraalrslpkdl 83 
                   ++lG++ a   l+r++ l+ ++ +++ +++++P +vl++l+++ +             l  +  + + ++ii+l + +++y++ ++r+a+ ++pk++
    EHT99856.1  28 VILGLIGAgakLSRHRLLSLIFEGYTTLIRGVPDLVLMLLIFYGLqivlnhitdalG-LAQFDiDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGQ 123
                   78899999999*****************************99999********9954.44444488999**************************** PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlld 180
                   +eaa+a G +  q+f+++++P++++++++g+++++  +l++++l+++lg    l +++  ++l+   ++  +  ++++++++l+++++++ +  +l+
    EHT99856.1 124 IEAATAFGFTGSQVFCRILFPAMMRYALPGIGNNWQVILKATALVSLLG----LEDVVKATQLAGKSTWQPFYFAIVAGVIYLVFTTLSNGVLWWLN 216
                   *************************************************....***************999*************************9 PP

  BPD_transp_1 181 prvr 184
                   +r +
    EHT99856.1 217 RRYT 220
                   9975 PP

>> DcuC  C4-dicarboxylate anaerobic carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2   2.7e-05      0.24     267     371 ..       1     103 [.       1     112 [. 0.86
   2 ?    4.1   0.6    0.0015        13     141     211 ..     137     205 ..     124     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.7e-05
        DcuC 267 vllglafvivngewylpeiavlflamgilvefiaklnglkekeiveafveGaaellgvalvvglargveviaeggmiidtilnlisnalsglsgivfil 365
                 +l+g + vi++g++   e+a++++++++++++i    +l+ +  ++  +eG  +l  +  v  l+    ++ +   +++ i +++  a+  ++ +v+ +
  EHT99856.1   1 MLYGYSDVILKGTLVTLELALSSVLLAVILGLIGAGAKLSRHRLLSLIFEGYTTL--IRGVPDLVLMLLIFYGLQIVLNHITDALGLAQFDIDPMVAGI 97 
                 8999999****************************9*******************..777777777777888888888888888888888877777777 PP

        DcuC 366 vmlliq 371
                 ++l ++
  EHT99856.1  98 ITLGFI 103
                 777766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0015
        DcuC 141 afypiLvPvlvalGydsivava.aillatqvgilastinPfavviAaeiAgvsiadgivlrllvlviltlis 211
                 +f  iL+P +++     i     +il at+ ++l  +    +vv A + Ag s+ + +++ +++ vi  ++ 
  EHT99856.1 137 VFCRILFPAMMRYALPGIGNNWqVILKATALVSLLGLE---DVVKATQLAGKSTWQPFYFAIVAGVIYLVFT 205
                 6899********98888876551555566666555555...5**************9999999888765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1678.64
//
Query:       EHT99857.1  [L=260]
Description: periplasmic substrate-binding component of a lysine-arginine-ornithine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-66  223.2   1.1    3.2e-66  223.0   1.1    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    7.4e-05   22.8   0.0     0.0037   17.2   0.0    2.1  2  NMT1             NMT1/THI5 like
    0.00013   22.1   0.1     0.0049   17.0   0.1    2.3  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
  ------ inclusion threshold ------
       0.07   12.7   0.0       0.25   10.8   0.0    1.8  2  YhfZ_C           YhfZ C-terminal domain


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.0   1.1   7.2e-70   3.2e-66       1     224 [.      28     254 ..      28     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.0 bits;  conditional E-value: 7.2e-70
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 +rvg+d++ypPf+ k+++g+l+Gfd+dla++i+kr++ k+++v+ ++d+lip+lk++k+D++i++++it++R+e+++Fs+  + a+ +l+++k++ +  
  EHT99857.1  28 IRVGTDPTYPPFESKNAQGQLVGFDIDLANEICKRIQTKCTYVESDFDALIPSLKAKKIDAIISSLSITAKRQEEIAFSDKLYAANARLVAPKGS-KI- 124
                 79*****************************************99***********************************************875.44. PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE......ECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv......eeplsseeyaiav 191
                   ++++++Lkgk vgv +g+t+e++++++++  g++++++++++ ++q+L +gr+da++ d++ +a+   k+p +k ++       + ++++ + +i++
  EHT99857.1 125 --LPTVESLKGKNVGVLQGTTQETYANQYWRPkGVTVTPYANQDLVYQDLTAGRIDAAFQDEVQAAEGFLKQPVGKDYAFagpavkDDKIFGVGTGIGL 221
                 ..56666*********************99888889999**********************************99999999****************** PP

                 ETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelkadgtlakisekWfg 224
                 rk+d+eL++ai+ka++++++dgt++ki++k+f+
  EHT99857.1 222 RKDDTELKAAIDKAFESMRKDGTYDKIAKKYFN 254
                 ********************************6 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.016        71     120     145 ..      65      90 ..      60     102 .. 0.89
   2 !   17.2   0.0   8.4e-07    0.0037      75     145 ..     114     181 ..      97     194 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
                 GG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1 120 sdvtlvnvggtslakalltgkvDaai 145
                  ++t v+ +++ l+++l ++k+Da+i
  EHT99857.1  65 TKCTYVESDFDALIPSLKAKKIDAII 90 
                 58999*******************99 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 8.4e-07
                 EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  75 sglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                   l++ k+s+ + ++++LkGk +g+ ++  +++  ++ ++ +g++   + +++     ++++l +g++Daa+
  EHT99857.1 114 ARLVAPKGSKiLPTVESLKGKNVGVLQGTTQETYANQYWRPKGVTVTPYANQDL----VYQDLTAGRIDAAF 181
                 56788889998899******************************8888888777....56689*******97 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-06    0.0049      66     107 ..      73     114 ..      34     121 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
                      EB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-E CS
  Lig_chan-Glu_bd  66 ewnGmigellekkadlavapltitaeReevvdFtkpfmelgi 107
                        + +i +l +kk+d ++++l+ita+R+e + F++  +    
       EHT99857.1  73 DFDALIPSLKAKKIDAIISSLSITAKRQEEIAFSDKLYAANA 114
                      5788999***************************98776655 PP

>> YhfZ_C  YhfZ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.6e-05      0.25     131     171 ..      57     100 ..      52     118 .. 0.75
   2 ?   -0.5   0.0      0.17   7.5e+02     125     161 ..     143     180 ..      98     190 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
      YhfZ_C 131 eaifegk..dvelveisynqllelllkgkiDavvWnld.evqee 171
                 ++i+++   + ++ve +++ l+ +l+++kiDa++ +l+ + +++
  EHT99857.1  57 NEICKRIqtKCTYVESDFDALIPSLKAKKIDAIISSLSiTAKRQ 100
                 555554223899**********************9988333333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
      YhfZ_C 125 Dqkilteaifegkdvelveisynq.llelllkgkiDav 161
                  q++ ++++ + k v++ +   ++ + + l++g+iDa+
  EHT99857.1 143 TQETYANQYWRPKGVTVTPYANQDlVYQDLTAGRIDAA 180
                 46666777777777777776555514578999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1963.62
//
Query:       EHT99858.1  [L=189]
Description: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-24   86.1   0.1    2.6e-24   85.7   0.1    1.1  1  Flavoprotein     Flavoprotein
  ------ inclusion threshold ------
      0.045   14.0   0.1       0.22   11.7   0.1    1.9  2  CTP_transf_like  Cytidylyltransferase-like
       0.13   12.2   0.0       0.22   11.4   0.0    1.4  1  Dak2             DAK2 domain


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   4.4e-28   2.6e-24       1     125 [.       2     165 ..       2     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 4.4e-28
                   EEEEEEE-SSCGGGCHHHHHHHHHH.TTEEEEEEESCHHHHCCHHG.GS..........TCSSHHHHHHCT...............TESEEEEEEEE CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkk.egievqvvltkaAkkfiske.klklaa......redpilhielrr...............wadllviaPas 74 
                   k++++gi+G++++i++++ll+ L++ +++e+++v++ aA++++s e +++l +                                 ++ ++vi+P+s
    EHT99858.1   2 KRLIIGISGASGVIYGVRLLQVLQQvSDVETHLVISHAARQTLSLEsDYSLRDvqaladV----------VhdvrdiaasissgsfKTLGMVILPCS 88 
                   689**********************99*****************9964444444544442..........0333344555677778*********** PP

                   HHHHHHHHTT--SSHH..............................HHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH CS
  Flavoprotein  75 antlakianGiadnll..............................tlilratakkpiliaPamnpamyenpqtlknlekl 125
                   ++tl+ i++ ++d+ll                              ++++   a+ +++i+P + pa+y++p t+++l++ 
    EHT99858.1  89 MKTLSGIVHSYSDSLLtraadvvlkeqrklvlcvretplhighlrmMTTA---AELGAIIMP-PVPAFYHRPTTIDELVDQ 165
                   *****************************************998865555...99*******.**************9987 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.16   9.3e+02      83     118 ..      31      67 ..      17     114 .. 0.73
   2 ?   11.7   0.1   3.6e-05      0.22       8      26 ..     126     144 ..     125     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.16
                      T.EEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE CS
  CTP_transf_like  83 d.klylvigadvledfsewkeleeilgnvklvvvsrp 118
                      +  l++ + a++  ++++++ l+++ +   +v  +r+
       EHT99858.1  31 EtHLVISHAARQTLSLESDYSLRDVQALADVVHDVRD 67 
                      3566777777777777777777777776666666665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.6e-05
                      T--HHHHHHHHHHHHHSSE CS
  CTP_transf_like   8 piHlGHlrlleqakkllee 26 
                      p+H+GHlr++  a++l+  
       EHT99858.1 126 PLHIGHLRMMTTAAELGAI 144
                      99**************987 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.6e-05      0.22      41      70 ..       4      34 ..       1      67 [. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
                HHHH--STHHHHHHHHHHHHHHHC......T CS
        Dak2 41 llsgagGtsGvlysqflralakalkekee.l 70
                l+ g+ G+sGv+y+  l+++ +++++ e+ l
  EHT99858.1  4 LIIGISGASGVIYGVRLLQVLQQVSDVEThL 34
                566899******************9954423 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1392.24
//
Query:       EHT99859.1  [L=505]
Description: amidophosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-16   60.2   0.1    5.3e-16   59.0   0.1    1.6  1  GATase_6      Glutamine amidotransferase domain
    1.1e-14   54.3   0.0    2.2e-14   53.4   0.0    1.5  1  GATase_7      Glutamine amidotransferase domain
    1.4e-07   31.1   0.0    4.9e-07   29.4   0.0    1.8  2  Pribosyltran  Phosphoribosyl transferase domain
    1.3e-05   24.3   0.0    9.4e-05   21.4   0.0    2.1  2  GATase_4      Glutamine amidotransferases class-II
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.34   10.9   0.0    2.0  1  hnRNP_Q_AcD   Heterogeneous nuclear ribonucleoprotein Q acidi


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   1.5e-19   5.3e-16      10     133 ..      64     209 ..      51     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.5e-19
    GATase_6  10 vedevalaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall.......eelG..........eevle 90 
                  +++++++H+R  + g +  ++aqPf +++  +++l+hNG   n++elr++l ++ +++++++sD+e+ll+++       ++++          ++v +
  EHT99859.1  64 LQGNMGIGHARYPTAGSSSASEAQPFyVNSPYGISLAHNGNLTNAHELRKQLFEKGRRHVNTTSDSEILLNIFaqeldrfQHYPleadnifaaiAAVHQ 162
                 35669*************99999***9999999*********************77788************8886666664444888899988555559 PP

    GATase_6  91 rlrGmfafaiwdkrentlilardrlgvkplyyavd.....esglafas 133
                 ++rG++a++ +    ++++  rd  g++pl+ +           ++as
  EHT99859.1 163 QVRGAYAVVSMI-IGHGMVAFRDPNGIRPLVLGKRviadgRTEYMVAS 209
                 ****88885443.556666669********998766665544555555 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   6.3e-18   2.2e-14       8     122 ..      81     215 ..      72     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 6.3e-18
    GATase_7   8 dseagaQPmvssedgrlvivfnGeiyNykelreeLeakgh.rfrtksDtevllallea................ewgeealerlnGmfAfaiwdeeekr 89 
                  s+++aQP++ ++   + +++nG ++N +elr++L +kg  +++t+sD+e+ll+++++                + ++++ ++++G +A++ +   +  
  EHT99859.1  81 SSASEAQPFYVNSPYGISLAHNGNLTNAHELRKQLFEKGRrHVNTTSDSEILLNIFAQeldrfqhypleadnifAAIAAVHQQVRGAYAVVSMIIGH-G 178
                 67899*****977777********************9986267*************99****************99***************999777.7 PP

    GATase_7  90 lllaRDrlGikPLyygedk....gdallfaSelkall 122
                 +++ RD+ Gi+PL +g++      +++++aSe  al 
  EHT99859.1 179 MVAFRDPNGIRPLVLGKRViadgRTEYMVASESVALD 215
                 9***************997766556899999999885 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.4e-10   4.9e-07      20     121 ..     285     394 ..     274     405 .. 0.83
   2 ?   -2.2   0.0      0.73   2.6e+03     104     130 ..     441     467 ..     440     486 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.4e-10
                   EEEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE..............EE----TTSEEEEE-SEESSSHHHHHHHH CS
  Pribosyltran  20 aeilee.yngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes......rlledpagkkVliVDDildtGgTllaale 108
                   ++i +e  +  +dvv++i+  ++  a ++a+ L+ p+     k +y + +     +++  +        + +++++k Vl++DD +  G+T + ++e
    EHT99859.1 285 QKIAREwEDLDIDVVIPIPETSMDTALEIARILDKPYRqGFVKNRYVGRTFIMPGQQLRRSAvrrklnANRAEFRDKNVLLIDDSIVRGTTSEQIIE 381
                   455555556889**********************9*665888888887776655555544447779999**************************** PP

                   HHHCC-BSEEEEE CS
  Pribosyltran 109 lLkekgpeevria 121
                     +e+g+++v +a
    EHT99859.1 382 MAREAGAKKVYLA 394
                   *********9877 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.73
                   HHHHHHHHCC-BSEEEEEEEEE-HHHH CS
  Pribosyltran 104 laalelLkekgpeevriavlvdkpate 130
                   +  +e+++e++p +v + ++v ++  +
    EHT99859.1 441 TDLIEAVREENPDIVQFECSVFNGVYV 467
                   677899999999999999998776654 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.6e-08   9.4e-05      68     179 ..      63     178 ..      25     193 .. 0.78
   2 ?   -0.1   0.0     0.098   3.5e+02     170     216 ..     359     405 ..     338     419 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.6e-08
    GATase_4  68 piksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlke...ykpkl..egrfePvGsTDsElafCelleelasrfekaepsaeeleralae 161
                  ++ ++ + H R  t G+ + ++++pF  +     + +AHnG+l++   ++++l  +gr +   + DsE  + ++ +el++ + + + +a+++++a+a+
  EHT99859.1  63 RLQGNMGIGHARYPTAGSSSASEAQPFYVN-SPYGISLAHNGNLTNaheLRKQLfeKGRRHVNTTSDSEILLNIFAQELDRFQ-HYPLEADNIFAAIAA 159
                 3888999********************865.3456889******77223455557444444445559**99999999998766.568999********* PP

    GATase_4 162 lakeia.elGvfnlllsdg 179
                 + +++  ++ v+ +++  g
  EHT99859.1 160 VHQQVRgAYAVVSMIIGHG 178
                 9999852556666666555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.098
    GATase_4 170 GvfnlllsdgralfahastrLvyilRkaPfgeaelkdedlevdfeev 216
                    n+ll d   +   +s++++ + R+a  +++ l+ ++ ev+f +v
  EHT99859.1 359 RDKNVLLIDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEVRFPNV 405
                 4569999999999999*************************999876 PP

>> hnRNP_Q_AcD  Heterogeneous nuclear ribonucleoprotein Q acidic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.5e-05      0.34      16      57 ..     463     503 ..     457     505 .] 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.5e-05
  hnRNP_Q_AcD  16 sgkltasdlDeraleaLkslpeegAlaVlkqfkesdlskvsN 57 
                  +g+  ++d+D+  le L+sl+ ++A a+  q +e++  + +N
   EHT99859.1 463 NGVYVTKDVDQGYLEYLESLRNDDAKAIARQ-NEVENLELHN 503
                  6888899******************998776.5665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3846.67
//
Query:       EHT99860.1  [L=161]
Description: membrane protein required for colicin V production [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-38  129.9  13.3      8e-38  129.7  13.3    1.0  1  Colicin_V        Colicin V production protein
  ------ inclusion threshold ------
       0.14   12.4   0.9       0.24   11.6   0.9    1.4  1  Arch_flagellin   Archaebacterial flagellin
       0.48   10.3   2.9       0.79    9.6   2.9    1.3  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
        2.1    8.5   7.0        6.5    6.9   0.0    2.9  2  Phage_holin_4_1  Bacteriophage holin family


Domain annotation for each model (and alignments):
>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7  13.3   1.8e-41     8e-38       1     141 [.       4     143 ..       4     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 1.8e-41
   Colicin_V   1 lDliillilllsallGlrrGfvrevlsllgwvvafvvasllypslaellaelilspalaaiiaflllfllvllivsllgallsklvsktglglldrllG 99 
                 +D++i++++++sal++l+rGfvre+lsl+ w +af+vas++y +la +++  + ++ ++++ia+++lf+++l++++++++++++lv+ktgl+++dr+lG
  EHT99860.1   4 IDYVIIAVVGFSALVSLVRGFVREALSLVTWGCAFFVASHYYAYLAVWFTG-FDDELVRNGIAIAVLFIATLIVGAIVNYVIGSLVEKTGLSGTDRVLG 101
                 7**************************************************.69********************************************* PP

   Colicin_V 100 aifGllkglllvv.llllllalvplpkvqewlqnSvlaplles 141
                 ++fG+l+g+l+v  ll++l +++  +k +  +q+S+l+p + s
  EHT99860.1 102 VCFGALRGVLIVAaLLFFLDTFTGFSKSP-DWQQSQLIPEFSS 143
                 *************9999999999999999.********97765 PP

>> Arch_flagellin  Archaebacterial flagellin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   5.3e-05      0.24       3      26 ..      62      85 ..      61      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
                    -HHHHHHHHHHHHHHHHHHHHHHH CS
  Arch_flagellin  3 vgigtlIvfIAmVlVAAvaagvli 26
                    +gi+ +++fIA ++V A++ +v+ 
      EHT99860.1 62 NGIAIAVLFIATLIVGAIVNYVIG 85
                    69999****************985 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.9   0.00018      0.79       4      36 ..      75     111 ..      72     115 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
  Rick_17kDa_Anti   4 liGAaaGgvaGaaigg....gggrvlGavvGAaaGav 36 
                      ++GA++  v+G+++ +    g++rvlG   GA+ G +
       EHT99860.1  75 IVGAIVNYVIGSLVEKtglsGTDRVLGVCFGALRGVL 111
                      89************555***************98865 PP

>> Phage_holin_4_1  Bacteriophage holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   4.6      0.11     5e+02      39      70 ..      56      87 ..       1      97 [. 0.75
   2 ?    6.9   0.0    0.0015       6.5       3      32 ..     100     129 ..      98     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
  Phage_holin_4_1 39 sskkglkgiikkvlilllvlvahllDvllgkn 70
                     + + +++gi+  vl ++ ++v++++ +++g+ 
       EHT99860.1 56 DDELVRNGIAIAVLFIATLIVGAIVNYVIGSL 87
                     44556677777777777777777777777653 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
  Phage_holin_4_1   3 lsyllggvdklltallllmviDyltGllaa 32 
                      l+  +g +  +l++  ll+++D+ tG+ ++
       EHT99860.1 100 LGVCFGALRGVLIVAALLFFLDTFTGFSKS 129
                      67899*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1305.71
//
Query:       EHT99861.1  [L=259]
Description: DedD family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-11   44.2   0.4      3e-11   43.5   0.4    1.3  1  SPOR          Sporulation related domain
  ------ inclusion threshold ------
        3.9    7.2   8.7        4.6    7.0   8.7    1.1  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        4.6    6.0   7.1        6.1    5.6   7.1    1.1  1  NARP1         NMDA receptor-regulated protein 1


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.4   5.1e-15     3e-11       2      75 ..     180     254 ..     179     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 5.1e-15
                 TTBB--BS-EES-HHHHHHHHHHCCHHT--....EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS--B- CS
        SPOR   2 sggytvQvgafsseanAerlaakLrakgfaaav.avvsgggglyrVrvGpfasreeAqaalkkLkaaagisafvv 75 
                 ++ y vQ+ga+++ +  ++ +akLr   ++a++ + +  +g+ +r++vGp as++ +qaa  +Lk++ g+s++v 
  EHT99861.1 180 GQAYVVQLGALKNASKVNEIVAKLRLSRYRAYTvPSTPVQGQITRIYVGPDASKAKMQAAVGELKNVSGLSGVVK 254
                 578**************************************************************7789999885 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   8.7   0.00077       4.6      79     158 ..     100     178 ..      32     196 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00077
                 XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  79 eespt..pelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaea 158
                     +  p+++   +e+ ++  + +++e+ ++++ e+++++  ek++  ++ +  ek +++e+ +   +++a +++ +e++ 
  EHT99861.1 100 VV--SppPVHSTTAKEKPAETTKPKHTEQAKPKPVEQTQSKPVEKTKPVEQAKPVEKTRPAEQAART-EEAAPAEQPKETQP 178
                 22..133666666667777778888888888888888888888887776663333333333333322.23333333333333 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.1     0.001       6.1     392     492 ..     111     211 ..     104     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.001
                 GGG---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT-S-HHHHHHHHHTTTGGGTTT-TH CS
       NARP1 392 akeeekeeaksaelseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkteepLeeAlkflkpLlklaaenie 490
                 ake++ e +k +++++a+ k +++ + k  +k +  e++k  ++++ ++++++++++   +++++++p g++ v +  +L++A+k  +++ kl   +  
  EHT99861.1 111 AKEKPAETTKPKHTEQAKPKPVEQTQSKPVEKTKPVEQAKPVEKTRPAEQAARTEEAAPAEQPKETQPSGQAYVVQLGALKNASKVNEIVAKLRLSRYR 209
                 4555666666667788888888888999988888888887777777667777777788888899999******************99998888777666 PP

                 HH CS
       NARP1 491 th 492
                 ++
  EHT99861.1 210 AY 211
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1183  (0.0659825); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 2093.57
//
Query:       EHT99862.1  [L=422]
Description: folylpolyglutamate synthase/dihydrofolate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-09   37.9   0.0      4e-09   36.7   0.0    1.6  1  Mur_ligase_M  Mur ligase middle domain
    1.7e-07   31.4   0.0    7.4e-07   29.3   0.0    2.1  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   4.5e-13     4e-09       1     107 [.      54     197 ..      54     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 4.5e-13
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC......................................SS-THHHHHHHHHHHHHTT-SEEEEE--HC CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg......................................ttnneiglpktlaemekkeaeyavlEvssh 59 
                   v+GtnGK Tt + ++ +l +ag  +g+                                         t  e g+ ++l+ +++++ ++++lEv+  
    EHT99862.1  54 VAGTNGKGTTCRTLETLLMAAGYRVGVYSsphlvrytenvrvqgqelseaqhsasfadieagrgtisLTYFEFGTLSALKLFQQAKLDVVILEVGLG 150
                   89*******************77777777777**********************************9667889************************ PP

                   HHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSET CS
  Mur_ligase_M  60 glgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlke 107
                     g     ++++ dvav+t+i  dH d +  +++ + ++Ka  f++ k+
    EHT99862.1 151 --GRLDATNIVDADVAVVTSIALDHTDWLgPDRDSIGREKAGVFRQGKP 197
                   ..44444555*****************88679999*****999987664 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   8.3e-11   7.4e-07       2      72 ..     287     350 ..     286     368 .. 0.86
   2 ?   -2.2   0.0      0.56     5e+03      28      49 ..     382     403 ..     372     406 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 8.3e-11
                   TTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHS CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasala 72 
                   +gR++ v+e  +++vi D ahnp+++  + + l+ + + +++++v+g + +  +++++    + +la +++
    EHT99862.1 287 PGRFQTVSE--SPRVILDVAHNPHAAGYLASRLAALPTRGHVHAVVG-MLH--DKDIA--GTLSALAPQVD 350
                   8*******9..9************************99*********.777..35555..88888888855 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.56
                   HHHHHHHHHHSSSSEEEEEEEE CS
  Mur_ligase_C  28 saalkalreiapdkrlilvfgp 49 
                   ++a + +r+ a+ + +ilv+g+
    EHT99862.1 382 EQAWQQARQQAEPQDIILVCGS 403
                   5566667777778899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3091.90
//
Query:       EHT99863.1  [L=304]
Description: acetyl-coenzyme A carboxyl transferase beta chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-18   64.1   0.1    1.7e-17   63.3   0.1    1.4  1  Carboxyl_trans  Carboxyl transferase domain
    8.7e-15   54.5   3.2    1.5e-14   53.7   3.2    1.4  1  zf-ACC          Acetyl-coA carboxylase zinc finger domain
  ------ inclusion threshold ------
      0.055   12.9   0.8        3.7    7.1   0.1    2.4  2  zf-ribbon_3     zinc-ribbon domain
      0.069   13.1   1.1       0.18   11.8   1.1    1.6  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
        0.1   12.7   1.2       0.31   11.2   1.2    1.8  1  Zn-ribbon_8     Zinc ribbon domain
       0.11   12.6   0.4       0.21   11.6   0.4    1.4  1  DZR             Double zinc ribbon
       0.13   11.4   0.4       0.24   10.4   0.4    1.4  1  Tmemb_55A       Transmembrane protein 55A
       0.24   11.3   1.0       0.47   10.4   1.0    1.4  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
        0.7   10.1   4.1       0.27   11.4   0.8    2.0  2  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.1   8.3e-21   1.7e-17      39     179 ..      97     240 ..      53     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 8.3e-21
                     H....HHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTEEEEEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHH CS
  Carboxyl_trans  39 r....kkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaikagepligindsgGaegriqegveslrgsGkifgenska 129
                     +    k    +d+++   G+ +G+ v+  a ++ ++ggs+g + g + ++a+e+a++ ++pli +  sgGa  r+qe   sl +++k  ++ +k+
      EHT99863.1  97 LvaaqKATDEKDALIVMKGQLHGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGA--RMQEALMSLMQMAKTSAALAKM 189
                     133223334578999999*****************************************************..********************** PP

                     HH.CS-EEEEESSEEETH.HHHHHHHTSEEEEETTEEEEESSTHHHHHHHHS CS
  Carboxyl_trans 130 sg.eIpqislvtgrcaGg.gaYlpalgdrvimveetskifltGpdvikkvlg 179
                     ++ ++p+is++t +++Gg  a  + lgd  ++  + + i+++Gp+vi++ + 
      EHT99863.1 190 QErGLPYISVLTDPTMGGvSASFAMLGDLNVAEPK-ALIGFAGPRVIEQTVR 240
                     ****************9834556778888887777.***********98654 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   3.2   7.6e-18   1.5e-14       1      26 []      26      51 ..      26      51 .. 1.00

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 7.6e-18
      zf-ACC  1 WtKCpsCgemlykkeLernlyVCPkC 26
                WtKC+sCg++ly+ eLernl+VCPkC
  EHT99863.1 26 WTKCDSCGQVLYRAELERNLEVCPKC 51
                ************************** PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0018       3.7      16      26 .]      26      36 ..      19      36 .. 0.78
   2 ?    4.0   0.1     0.018        35       4      10 ..      47      53 ..      45      56 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
  zf-ribbon_3 16 dnvCpyCGtkl 26
                 +++C +CG++l
   EHT99863.1 26 WTKCDSCGQVL 36
                 78999999886 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
  zf-ribbon_3  4 rCPnCGa 10
                  CP+C++
   EHT99863.1 47 VCPKCDH 53
                 4888887 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   8.9e-05      0.18      30      56 ..      28      55 ..      27      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.9e-05
  OrfB_Zn_ribbon 30 tCseCgsknke.alsgrtfkCpnCgfea 56
                    +C  Cg+++++ +l++++ +Cp+C +++
      EHT99863.1 28 KCDSCGQVLYRaELERNLEVCPKCDHHM 55
                    8**********99***********9985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   0.00016      0.31       7      36 ..      28      55 ..      28      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
  Zn-ribbon_8  7 rCeeCghefevlqsis.dapltaCPeCgsev 36
                 +C++Cg    vl ++  +++l++CP+C +++
   EHT99863.1 28 KCDSCG---QVLYRAElERNLEVCPKCDHHM 55
                 7*****...56666677999999****8765 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   0.00011      0.21      14      42 ..      28      59 ..      19      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
         DZR 14 fCseCgtklkavaa...edrCpsCgekvdpea 42
                 C+ Cg+ l +++     ++Cp+C++ + + a
  EHT99863.1 28 KCDSCGQVLYRAELernLEVCPKCDHHMRMHA 59
                5*******9744438999******99887765 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00012      0.24     126     174 ..       6      52 ..       2      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
   Tmemb_55A 126 riinLgPveagpvspelqpvgvrviCghCkntflftelsrtlarCPhCr 174
                 ri n + +  +p+     p+gv   C  C +  + +el+r+l  CP+C 
  EHT99863.1   6 RIFNKSNI--TPARRANIPEGVWTKCDSCGQVLYRAELERNLEVCPKCD 52 
                 55555544..67777889******************************6 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   0.00024      0.47       3      28 ..      28      52 ..      28      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
                  B-TTT--BBEEEECTTEEEEE-TTTT CS
  zf-FPG_IleRS  3 pCpRCwryiervgqagrstyfCprCq 28
                  +C+ C+ ++ r ++ +r+ ++Cp C 
    EHT99863.1 28 KCDSCGQVLYRAEL-ERNLEVCPKCD 52
                  8*************.**********6 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   0.00013      0.27      17      40 .]      28      52 ..      26      52 .. 0.92
   2 ?   -2.9   0.1         4   7.9e+03      14      21 ..     152     160 ..     152     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
  Auto_anti-p27 17 tCpvCgvPLmrdr.kggkvyCvaCd 40
                    C+ Cg +L r   +++  +C+ Cd
     EHT99863.1 28 KCDSCGQVLYRAElERNLEVCPKCD 52
                   6***********9*88999*****7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4
  Auto_anti-p27  14 LaetCpv.C 21 
                    L+++Cp  C
     EHT99863.1 152 LEDNCPLiC 160
                    678899666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2186.17
//
Query:       EHT99864.1  [L=218]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-23   84.0   4.7    1.1e-23   84.0   4.7    1.8  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.29   10.8   1.6         12    5.7   0.1    3.0  3  Doppel       Prion-like protein Doppel


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.27   2.5e+03      59      79 ..      18      38 ..      13      46 .. 0.69
   2 !   84.0   4.7   1.2e-27   1.1e-23       1     120 []      49     177 ..      49     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
  SNARE_assoc 59 lerlverygflallllrllpi 79
                 l++lv +yg+++  +l l+ +
   EHT99864.1 18 LAELVAQYGIWIYAILFLILF 38
                 567777777777777766654 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 1.2e-27
  SNARE_assoc   1 lPsevllvaaGvlf.......glllgtlvtslgallGaslayllgrylgr...kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyv 88 
                  lP++ ll++aG+l+       ++ l++ +++++a+lG+ ++y +g+ +g+   ++ ++k++ + ++++ +++  r+g ++++l+r++piv r+++++v
   EHT99864.1  49 LPGDSLLFVAGALAalpgndlNVHLMVALLVIAAILGDAVNYTIGKLFGErlfSNPNSKIFRRSYLDKTHAFYTRHGGKTIILARFVPIV-RTFAPFV 145
                  79************88888887788*****************************************************************.******* PP

  SNARE_assoc  89 aGltrvsfkrFflatfiGsipwalvyaylGsl 120
                  aG+ ++s+++F+l+++ G++ w+l+++y+G+l
   EHT99864.1 146 AGMGHMSYRHFALFNVTGALAWVLLFSYAGYL 177
                  ******************************95 PP

>> Doppel  Prion-like protein Doppel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0013        12       6      19 ..      26      39 ..      23      44 .. 0.88
   2 ?    2.3   0.2     0.015   1.4e+02      11      19 ..     164     172 ..     164     173 .. 0.92
   3 ?   -0.7   0.0      0.13   1.2e+03      17      25 ..     177     185 ..     176     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0013
                SSCCHHHHHHHHHH CS
      Doppel  6 gtWwlAivCvLLfS 19
                g+W  Ai++  Lf 
  EHT99864.1 26 GIWIYAILFLILFG 39
                9***********95 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.015
                 HHHHHHHHH CS
      Doppel  11 AivCvLLfS 19 
                 A++ vLLfS
  EHT99864.1 164 ALAWVLLFS 172
                 8999****9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.13
                 HHHHCCTTT CS
      Doppel  17 LfShLSlVk 25 
                 Lf +L+ V+
  EHT99864.1 177 LFGDLPVVQ 185
                 9*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1726.57
//
Query:       EHT99865.1  [L=267]
Description: tRNA pseudouridine synthase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-39  134.7   0.1    1.7e-27   96.0   0.0    2.1  2  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
      0.078   12.8   0.0       0.12   12.2   0.0    1.4  1  DUF2344          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   4.3e-13   3.8e-09       4     107 ..      14     108 ..      12     109 .. 0.91
   2 !   96.0   0.0   1.9e-31   1.7e-27       3     108 .]     150     250 ..     148     250 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 4.3e-13
  PseudoU_synth_1   4 elvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvl.favgqgklspedvkellnakkrkkiavetap 96 
                      e++G++++g +  q+q++ ++v++ le+a+++v+++      v+v ++g++d++V+  ++v+ f+ +  +++   ++  +na+++++iav++++
       EHT99865.1  14 EYDGSRYYG-W--QRQQEVRSVQEKLERALSKVADH-----PVSVFCAGRTDAGVHGTGQVVhFE-TVAQRADAAWTLGVNANLPDDIAVRWVK 98 
                      7********.9..99999******************.....9********************444.45566667778889************** PP

  PseudoU_synth_1  97 avglvlfhvrY 107
                      av+   fh+r+
       EHT99865.1  99 AVPD-EFHARF 108
                      ****.*****9 PP

  == domain 2  score: 96.0 bits;  conditional E-value: 1.9e-31
  PseudoU_synth_1   3 kelvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavetap 96 
                      ++l+G++df+sf++ +++++++ r++++ +++    ++++++ v++k+++F++h+VR++vg l+++g+g++++++++ell+ak+r+  a+ ta+
       EHT99865.1 150 QSLLGENDFTSFRAVQCQSRTPWRNVMHLNVS----RHGPYVIVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTL-AAATAK 238
                      89******************************....88999********************************************98.****** PP

  PseudoU_synth_1  97 avglvlfhvrYd 108
                      a+gl+l+ v+Y+
       EHT99865.1 239 AEGLYLVAVDYP 250
                      ***********8 PP

>> DUF2344  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.3e-05      0.12      56     117 ..      59     134 ..      46     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
     DUF2344  56 GveSegEyldielteevdpeevverLnaqlpegikileveeieek.akslmallaaaeYrve.............e 117
                 Gv ++g ++ +e  ++   ++    +na+lp++i +  v++++++ +   +a  ++ +Y +              +
  EHT99865.1  59 GVHGTGQVVHFETVAQRADAAWTLGVNANLPDDIAVRWVKAVPDEfHARFSATARRYRYLIYnqrlrpailgkgvT 134
                 999***********98999999999*******************97777778888888988435566664444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2079.04
//
Query:       EHT99866.1  [L=336]
Description: putative semialdehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-30  106.8   0.1    3.7e-30  105.4   0.0    1.7  2  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    7.1e-24   84.6   0.0    1.6e-23   83.4   0.0    1.7  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.059   14.1   0.0       0.12   13.1   0.0    1.5  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
       0.13   12.6   0.0       0.22   11.8   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.15   11.6   0.0       0.65    9.5   0.0    1.9  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.79   2.8e+03     146     179 ..     115     130 ..      92     135 .. 0.52
   2 !  105.4   0.0     1e-33   3.7e-30       1     183 [.     141     316 ..     141     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.79
                      SSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEE CS
  Semialdhyde_dhC 146 PtpaavaggtnsvsVGRirkdemgdeglklvvvg 179
                      P+ +a++ + n                  +++v+
       EHT99866.1 115 PQVLADYRNRN------------------IISVA 130
                      55555544333..................44444 PP

  == domain 2  score: 105.4 bits;  conditional E-value: 1e-33
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHHHHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESC.S CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte.k 93 
                      +kPL+da ++l r+ v+ + +vS  Gk +v++L++++a l+++ +a+  +fg+++a+Nl+p+  +   +g   ++ e++ v++ +k l++   +
       EHT99866.1 141 IKPLVDA-AGLGRLQVTNLISVSTHGKVAVDALAGESARLLNGVPADDHHFGRQLAFNLLPQQAD--AEG--SVESERRLVDQVRKVLQDDGlP 229
                      59****9.99****************************************************999..456..7899****************99 PP

                      EEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESSHCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEEETTT CS
  Semialdhyde_dhC  94 vsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvneeedrPtpaavaggtnsvsVGRirkdemgdeglklvvvgDNll 183
                      v  + v++Pv++G  + v+i+  l++ +++e++++la a  + ++  +eed+Ptp+ +a g+++ s+G +r+d   +e l++++v+DN++
       EHT99866.1 230 VAVSSVQAPVFYGNAQIVHIEN-LRPLSADEARAELALA--ADIRLSDEEDVPTPVTDASGSDALSIGSVRNDYGIPELLQFWSVADNVR 316
                      **********************.8***************..555555557**************************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   4.6e-27   1.6e-23       1     119 [.       6     119 ..       6     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 4.6e-27
                     EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkvi 94 
                     ++a++GatG+vG ++l+lL++ +++v +++ll+s++saG+  ++       g+ l+ve++ e ++++++++f+ ++ ++s+ +a+++a ag+ vi
      EHT99866.1   6 NIALLGATGAVGNAVLELLAQrQFPVGELYLLASDNSAGESKRFE------GRSLRVENAAEFDWSQAQLAFFVAGRDASARYAEEAAGAGCLVI 94 
                     69***************************************9999......78****************************************** PP

                     ESSSTTTTSTTSEBE-HHHHGGGGG CS
  Semialdhyde_dh  95 DlssdfRlkddavyvlpevnreaik 119
                     D s  f l++d+++v+p vn++ ++
      EHT99866.1  95 DSSELFALSPDVPLVVPDVNPQVLA 119
                     *********************9886 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.3e-05      0.12       1      66 [.       7      69 ..       7      94 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
                     EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHH CS
  DXP_reductoisom  1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkeal 66
                     +++LG+TG +G++ L+++++++  f v  l+     ++ a   k+f+ + + v+++++ +  +++l
       EHT99866.1  7 IALLGATGAVGNAVLELLAQRQ--FPVGELYLLA-SDNSAGESKRFEGRSLRVENAAEFDWSQAQL 69
                     789***************9987..8887776643.2344445566666666666666666555555 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     6e-05      0.22       1      49 [.       7      56 ..       7      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
                     EEEE--.SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCE CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvda.eitvadrskeklealaakalgvrf 49
                     + ++Ga G+vG av+ella+++  +  e+ +   +++  e    + ++ r+
       EHT99866.1  7 IALLGAtGAVGNAVLELLAQRQF-PVgELYLLASDNSAGESKRFEGRSLRV 56
                     679****************9863.334666666666655555444455555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00018      0.65       1      25 [.       7      31 ..       7      45 .. 0.94
   2 ?   -0.9   0.0      0.27   9.8e+02     124     187 ..     218     279 ..     216     301 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00018
                EEESSTTSHHHHHHHHHHHHHT-EE CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkv 25
                I+ +GaTG+ G++v + l++++++v
  EHT99866.1  7 IALLGATGAVGNAVLELLAQRQFPV 31
                899********************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.27
                 HHHHHHHHCTS-E..EEEEE-EEGGG-BSS.S-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHH CS
        NmrA 124 eieeyvralgipy..tfvyagffmenflsl.laqlkvgdtappedkvtllgpgnpkavlldaeeDiG 187
                 +++++++  g+p   + v a++f++n   + + +l++ + ++ +  ++l ++    ++l  +eeD+ 
  EHT99866.1 218 QVRKVLQDDGLPVavSSVQAPVFYGNAQIVhIENLRPLSADEARAELALAAD----IRLS-DEEDVP 279
                 6888888888885224566777777665540444444444444444444433....3344.666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2509.93
//
Query:       EHT99867.1  [L=377]
Description: erythronate-4-phosphate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-29  100.5   0.0      1e-28   99.9   0.0    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
    7.3e-29   99.4   0.0    1.2e-28   98.7   0.0    1.4  1  DUF3410       Domain of unknown function (DUF3410)
    7.1e-19   67.8   0.0    1.1e-18   67.2   0.0    1.2  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
       0.15   11.4   0.1       0.25   10.7   0.1    1.3  1  ThiF          ThiF family


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   2.3e-32     1e-28      30     178 .]     110     256 ..     105     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 2.3e-32
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--ST....TTTTSBSHHHHHCSTTTEE CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltp....etrhlinaeelakmkkgai 122
                    g +l+++tvGi+G+G++G ++ krl+a+g+k +  d+ + ++    +   e+ sl++l++++Di++ h+pl +    +  hl +a+ l ++k++ i
    EHT99867.1 110 DGFQLRDRTVGIVGVGNVGGRLQKRLEAWGVKTLLCDPPRADRG---D-DGEFLSLDALVQQADILTFHTPLFKsgpyKSWHLADAALLIALKPKTI 202
                   6889***********************************87443...3.3479*******************983333478**************** PP

                   EEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTE.EE-SS-T CS
  2-Hacid_dh_C 123 liNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnv.iltPHia 178
                   liN+ RG++vd++aLle+L+ ++   ++lDv+e+ep     +l+ l++v i t Hia
    EHT99867.1 203 LINACRGPVVDNAALLEVLNLRHDLSVVLDVWEPEPDL---SLALLDRVdIATAHIA 256
                   ***********************************977...5666677657788887 PP

>> DUF3410  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   2.7e-32   1.2e-28       1      81 []     289     369 ..     289     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 2.7e-32
                 CS---SCEEEEESTTS-HHHHHHHHHHH--CHHHHHHHHHCTTCCCHHHHHHHT------GGGSEEEETCTCHHHHHHHHT CS
     DUF3410   1 llpepelnelsltgkldeealkklvrlvYDvrrDdalfRrelekakgFdalRknYpeRREfsaltvtlkkssdaellsklG 81 
                 llp+pe++++sl+g ld+ +lk+lv+lvYDvrrDda +R++++k+++Fd+lRk+Y+eR E+s+l+v++++++ ae+l++lG
  EHT99867.1 289 LLPTPEFSQISLNGPLDQPTLKRLVHLVYDVRRDDAPLRKVAAKPGEFDRLRKQYEERSEWSSLQVNCDEAATAEMLTQLG 369
                 89******************************************************************************9 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   2.4e-22   1.1e-18       2     126 ..       4     280 ..       3     286 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 2.4e-22
                 EEEST.CHHHHHHHHHTTEEEEEES..CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellkeegvevevkd..ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 l+ e+  ++++el+++ g +v+     +l++    ++++dad+l+vrs t+v+a++l+  + +k++++a++G+D++D +++++ Gi+ + +pg+++++v
  EHT99867.1   4 LVDEN-MPYARELFSRTG-DVVAVPgrPLPE----AELADADGLMVRSVTHVNAALLQD-KPVKFVGTATAGTDHIDEAWLQQAGIAFSAAPGCNAIAV 95 
                 44555.788889999933.555555544444....45667******************9.89************************************* PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                  E++                                                                                               
  EHT99867.1  96 VEYVfsallllaerdgfqlrdrtvgivgvgnvggrlqkrleawgvktllcdppradrgddgeflsldalvqqadiltfhtplfksgpykswhladaall 194
                 *************************************************************************************************** PP

                 ..............................................................T-BHHHHHHHHHHHHHHHHHHHTT CS
                 ..............................................................xxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ..............................................................aaTeeaqeniaeeaaenlvaflkg 126
                                                                               ++T e   +  ++++e+ ++f+ +
  EHT99867.1 195 ialkpktilinacrgpvvdnaallevlnlrhdlsvvldvwepepdlslalldrvdiatahiaGYTLEGKARGTTQVFEAWCDFIGQ 280
                 **********************************************************************************9865 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.6e-05      0.25      14      45 ..     112     143 ..      97     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.6e-05
                 HHHHTSEEEEE--SHHHHHHHHHHHHHTTTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsGvgkl 45 
                  +Lrd +v +vG+G +G  l k L ++Gv+ l
  EHT99867.1 112 FQLRDRTVGIVGVGNVGGRLQKRLEAWGVKTL 143
                 579**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2940.91
//
Query:       EHT99868.1  [L=299]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-39  134.4  43.2    1.2e-21   77.4  12.0    2.0  2  EamA             EamA-like transporter family
      0.002   17.5  11.3      0.057   12.8   5.5    2.2  2  TPT              Triose-phosphate Transporter family
     0.0046   16.2   0.0     0.0046   16.2   0.0    1.6  2  Nuc_sug_transp   Nucleotide-sugar transporter
  ------ inclusion threshold ------
      0.055   13.0   0.6      0.055   13.0   0.6    2.8  4  L6_membrane      L6 membrane protein
       0.12   12.0   1.3       0.25   10.9   1.3    1.5  1  Cytochrome-c551  Photosystem P840 reaction-centre cytochrome 


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3  23.2     7e-21   2.5e-17       6     136 ..       5     135 ..       1     136 [. 0.92
   2 !   77.4  12.0   3.2e-25   1.2e-21       2     134 ..     150     280 ..     149     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 7e-21
        EamA   6 lallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkd.wllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 + l a+l+w++++++ k     ++p +++f+r+l+a ++l ++ l+   ++ + + ++ +  l++lgllg++l+++l +ya +++sa + ++i +l+P+
  EHT99868.1   5 FPLFAVLIWSVNAIVNKLSAGAIEPAAISFYRWLLALLVLTPFVLPGVLRQ-WQTIRPhLGRLMILGLLGMALYQSLAYYAAHSVSALFMGIIAALIPL 102
                 5689***************************************88888888.66666636667************************************ PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 +t++lsvl+l+  +t+  l+g +++++G++ ++
  EHT99868.1 103 LTVLLSVLILRIAPTVGILAGSLISFCGLIWLV 135
                 *****************************9876 PP

  == domain 2  score: 77.4 bits;  conditional E-value: 3.2e-25
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                  g+ l+l+a+ ++a+y+v++k+ +  ++ ++ +    ++ag++ll+  +l      +l+++++ l+++ gl++++la++l++ +++k++as+ s++++l
  EHT99868.1 150 TGEALMLAASACYALYGVMTKRWSIPLPVWQSLY-GQIAAGVMLLLPGFLMTPDV-SLTPRNLPLVAFAGLFASILAPWLWIHGVQKLGASITSIFMNL 246
                 5899******************866666666665.55678888877777777777.89***************************************** PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvll 134
                 +P+ft++++vl+l+e+l +++++g +l l+Gvll
  EHT99868.1 247 TPLFTALIAVLFLHEHLHSYHWIGGGLTLAGVLL 280
                 ********************************98 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   5.5   1.6e-05     0.057      16     123 ..      15     122 ..       2     136 .. 0.75
   2 !    8.3   0.3   0.00036       1.3      77     135 ..     223     281 ..     166     283 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
         TPT  16 vfnilnKkilnvfpyPltvsavqllvgsvlilvlwalglkkrpkisseflkailpla.lvktlghvlavvslskvaVSfthtvKasePiFtvilsrlll 113
                 v+ i+nK    +   P+ +s  + l   ++++++   g+ ++ +   + l  +++l+ l  +l + la  + ++v+  f  ++ a+ P+ tv+ls l+l
  EHT99868.1  15 VNAIVNKLSAGA-IEPAAISFYRWLLALLVLTPFVLPGVLRQWQTIRPHLGRLMILGlLGMALYQSLAYYAAHSVSALFMGIIAALIPLLTVLLSVLIL 112
                 455667654443.57999**99999998888888888777666666665555555551556788999999***************************** PP

         TPT 114 geklsllvyl 123
                 +  +++ ++ 
  EHT99868.1 113 RIAPTVGILA 122
                 9988887654 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00036
         TPT  77 lghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvala 135
                 l+  l    ++k   S t +   + P+Ft++++ l+l e+l+   ++     ++Gv la
  EHT99868.1 223 LAPWLWIHGVQKLGASITSIFMNLTPLFTALIAVLFLHEHLHSYHWIGGGLTLAGVLLA 281
                 34444455677778899999999999999999999999999988888777777777776 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3      0.97   3.5e+03     279     295 ..      99     115 ..      76     127 .. 0.55
   2 !   16.2   0.0   1.3e-06    0.0046     103     158 ..     231     286 ..     215     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.97
  Nuc_sug_transp 279 laiilstvasvllldlk 295
                     l  +l+++ svl+l ++
      EHT99868.1  99 LIPLLTVLLSVLILRIA 115
                     23334445555555555 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-06
  Nuc_sug_transp 103 alsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkqk 158
                     ++++L a++  +   l  l tal++vl+L+ +l++++W+   l +aGv l q  + 
      EHT99868.1 231 GVQKLGASITSIFMNLTPLFTALIAVLFLHEHLHSYHWIGGGLTLAGVLLAQRLRR 286
                     789999******************************************99997655 PP

>> L6_membrane  L6 membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.37   1.3e+03      84     103 ..      91     110 ..      65     136 .. 0.60
   2 ?   -1.6   0.6      0.47   1.7e+03     108     108 ..     115     115 ..      85     174 .. 0.59
   3 ?    0.5   0.2      0.11     4e+02      50      68 ..     182     200 ..     154     223 .. 0.85
   4 ?   13.0   0.6   1.5e-05     0.055      11      60 ..     231     280 ..     222     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
  L6_membrane  84 mllsillavlgvlGalyclv 103
                   ++ i++a++ +l  l +++
   EHT99868.1  91 LFMGIIAALIPLLTVLLSVL 110
                  33333444433333333333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.47
  L6_membrane 108 a 108
                  a
   EHT99868.1 115 A 115
                  1 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.11
  L6_membrane  50 fgGilGgGllvllpaivil 68 
                  + G +++G+++llp + ++
   EHT99868.1 182 LYGQIAAGVMLLLPGFLMT 200
                  679999******9998875 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 1.5e-05
  L6_membrane  11 GlsLlplallsivaNilllfpngkteylkeekiskevwlfgGilGgGllv 60 
                  G+  l  +++si +N+ +lf  +    + +e++ ++ w+ gG+  +G+l+
   EHT99868.1 231 GVQKLGASITSIFMNLTPLFTALIAVLFLHEHLHSYHWIGGGLTLAGVLL 280
                  6666677899**************************************97 PP

>> Cytochrome-c551  Photosystem P840 reaction-centre cytochrome c-551
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3     7e-05      0.25      29      97 ..     193     261 ..     180     282 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
                      XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Cytochrome-c551  29 fltGy.kvpaenisavltplksfmGwflliffasliilglGklsskisdkwflsfplsilvivavmfvsl 97 
                      +l G+  +p   +++   pl +f G f  i+   l i g+ kl + i+  ++   pl   +++av+f+  
       EHT99868.1 193 LLPGFlMTPDVSLTPRNLPLVAFAGLFASILAPWLWIHGVQKLGASITSIFMNLTPLF-TALIAVLFLHE 261
                      455662356777788889*****************************99877777774.45666777643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2035.22
//
Query:       EHT99869.1  [L=223]
Description: TctD family transcriptional regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-26   92.5   0.0    2.5e-26   92.1   0.0    1.2  1  Response_reg  Response regulator receiver domain
    2.3e-17   62.8   0.1    7.8e-17   61.1   0.0    1.9  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0028   17.9   0.0     0.0046   17.2   0.0    1.3  1  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain
     0.0054   17.1   0.0     0.0085   16.5   0.0    1.4  1  FleQ          Flagellar regulatory protein FleQ
  ------ inclusion threshold ------
       0.07   13.8   0.0       0.14   12.8   0.0    1.5  1  Adeno_VII     Adenoviral core protein VII
       0.11   12.8   0.5       0.71   10.2   0.1    2.0  2  Prim-Pol      Bifunctional DNA primase/polymerase, N-terminal
       0.17   11.4   0.1        6.2    6.5   0.2    2.4  2  GerE          Bacterial regulatory proteins, luxR family


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   9.6e-30   2.5e-26       2     111 ..       4     112 ..       3     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 9.6e-30
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   l+++D   +++ l+++l+++g+  v+ ++dg +a + l++e++ l++lD+++p++dG+e+l+++r++ +++pv++lta+++ +d+v++l+ gadd+l
    EHT99869.1   4 LLMEDTAELARWLQKALTQKGF-AVDWVADGVSADHSLQSEDYALVVLDVSLPRLDGIEVLTRLRRRGQNVPVLLLTARTTLDDRVRGLNTGADDYL 99 
                   899*******************.************************************************************************** PP

                   ESSG-HHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkal 111
                   +Kpf+ +eL ++l
    EHT99869.1 100 TKPFELDELDARL 112
                   *********9887 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   3.6e+03      52      61 ..     111     120 ..     102     140 .. 0.63
   2 !   61.1   0.0     3e-20   7.8e-17       2      77 .]     145     217 ..     144     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
                  HHHHHHHTTT CS
  Trans_reg_C  52 rLRkkLedde 61 
                  rLR  L+ ++
   EHT99869.1 111 RLRALLRRAQ 120
                  5666665542 PP

  == domain 2  score: 61.1 bits;  conditional E-value: 3e-20
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++++ltp+e ++L++L++++gr+vsr++L+e+     +d + ++++ +++r+RkkL+    ++  I t+rg GY l
   EHT99869.1 145 KPLALTPRESSVLTTLMQRRGRPVSRQHLYEQTFTLADDASPESIELYVHRVRKKLAG---SNVGIVTLRGLGYSL 217
                  6899******************************************************...5689*********86 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06    0.0046       7      75 ..      14      84 ..       9      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
  OKR_DC_1_N  7 relaealekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFllaetrts 75
                r l++al+++gf v +v++   + + +++  + a vvl+v+    +  e+l  +r+r++++Pv ll+ ++t 
  EHT99869.1 14 RWLQKALTQKGFAVDWVADGVSADHSLQS-EDYALVVLDVSlprLDGIEVLTRLRRRGQNVPVLLLTARTTL 84
                568999********999999977777776.9***********9999999******************97765 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.3e-06    0.0085       1      81 [.       2      84 ..       2     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.3e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs..sleealealaekdphlPvlllgesdea 81
                ++L+++d ae +r l+  L+  g  v +v++   ++ + +s+++al+v+  s       e l +l ++ +++Pvlll+ +++ 
  EHT99869.1  2 RLLLMEDTAELARWLQKALTQKGFAVDWVADGVSADHSLQSEDYALVVLDVSLPrlDGIEVLTRLRRRGQNVPVLLLTARTTL 84
                589**************************************************97777899****************998776 PP

>> Adeno_VII  Adenoviral core protein VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.6e-05      0.14      51      93 ..      78     120 ..      63     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
   Adeno_VII  51 ltartslddaidavveearnytptpppvstvdaklktklrgak 93 
                 ltart+ldd +  +   a +y   p  +  +da+l++ lr a+
  EHT99869.1  78 LTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRRAQ 120
                 79*************************************9886 PP

>> Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00028      0.71      25      91 ..      14      82 ..       6      93 .. 0.82
   2 ?    0.8   0.0      0.22   5.7e+02      85     103 ..     158     176 ..      90     217 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
    Prim-Pol 25 kwekdattdpeqirawwkkhpranvglatgpsglvvlDvDgke.agaealarLareegplPe.tvtvtt 91
                +w ++a t++     w++    a   l      lvvlDv  +  +g e+l rL+r+++ +P+  +t++t
  EHT99869.1 14 RWLQKALTQKGFAVDWVADGVSADHSLQSEDYALVVLDVSLPRlDGIEVLTRLRRRGQNVPVlLLTART 82
                6888888888888888888888888888889999*****99999******************6444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
    Prim-Pol  85 etvtvttgstgggrhlyfr 103
                  t+  + g++ +++hly +
  EHT99869.1 158 TTLMQRRGRPVSRQHLYEQ 176
                 3666777888888888855 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0024       6.2       2      16 ..     148     162 ..     147     163 .. 0.89
   2 ?    2.3   0.0     0.049   1.2e+02      30      46 ..     185     201 ..     183     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
                 SS-HHHHHHHHHHCT CS
        GerE   2 sLskRErevLrllae 16 
                  L++RE++vL+ l++
  EHT99869.1 148 ALTPRESSVLTTLMQ 162
                 59********99886 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.049
                 -HHHHHHHHHHHHHHHT CS
        GerE  30 SekTVkvhksnimkKLn 46 
                 S+++++ ++ ++ kKL 
  EHT99869.1 185 SPESIELYVHRVRKKLA 201
                 999************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1642.01
//
Query:       EHT99870.1  [L=143]
Description: putative tricarboxylate transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   70.5  16.7    1.8e-19   70.3  16.7    1.0  1  TctB      Tripartite tricarboxylate transporter TctB family
     0.0059   17.0   2.2      0.015   15.7   2.1    1.7  1  MgtC      MgtC family


Domain annotation for each model (and alignments):
>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3  16.7     2e-23   1.8e-19       3     135 .]       6     137 ..       4     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2e-23
        TctB   3 agllllllag..vafavgald.tg.arvgpgffPlllgvllallgllllvaadgekeekearedwrkllklvlallaalllyallleplGfilatalfl 97 
                 ++ l l+l++  +++a++ ++ ++ ++vgp+ fPl+l  l+al++++ll+ +++++++++     +  +k+++al ++l++y++l+e lGf l+tal++
  EHT99870.1   6 FATLWLVLCLagLVVAWQIQSeYSyEPVGPRPFPLVLLTLMALCAVMLLL-RKPDAIQWP----VPQTMKRLVALAVMLFVYGWLFERLGFPLSTALLT 99 
                 5555555544335566777778556*******************999999.444444444....45556666677779999***************666 PP

        TctB  98 llll..greerkwlkalilavvlallvyllFtklLgvpLP 135
                 + +   +    +w+ a++ ++v+  +++++F+ lL+v LP
  EHT99870.1 100 FGIGmlF--GARWWAAVLSGAVMGWALFYAFDHLLDVTLP 137
                 4433476..6789**************************9 PP

>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.1   1.6e-06     0.015       5     117 ..      14     130 ..      10     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-06
        MgtC   5 lllGlliGleRel..rekaaGlRTfaLval..gaalfvllslelae........srvaaqvvsgigflg.agvilkekegakvkglTTaaslwvtaaiG 90 
                 +l+Gl++ ++ +   + +++G R f Lv l  +a ++v+l   l +         + ++++v+  ++l   g ++ e+     + l Ta   ++t++iG
  EHT99870.1  14 CLAGLVVAWQIQSeySYEPVGPRPFPLVLLtlMALCAVML--LLRKpdaiqwpvPQTMKRLVALAVMLFvYGWLF-ERL---GFPLSTA---LLTFGIG 103
                 567888887766644777*******998651145555555..343356777777555556555555555266666.333...4666665...79***** PP

        MgtC  91 llvglglyllavvatvlvllllallre 117
                 +l+g+  +++ + ++v+  +l++++++
  EHT99870.1 104 MLFGARWWAAVLSGAVMGWALFYAFDH 130
                 ****99888888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1116.91
//
Query:       EHT99871.1  [L=500]
Description: tricarboxylate transport membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-142  473.9  47.3   4.6e-142  473.5  47.3    1.1  1  TctA       Tripartite tricarboxylate transporter TctA family
  ------ inclusion threshold ------
       0.12   11.9   0.2       0.12   11.9   0.2    2.2  3  Stevor     Subtelomeric Variable Open Reading frame
       0.45    9.7   6.4        1.7    7.8   6.4    2.0  1  DUF3413    Domain of unknown function (DUF3413)


Domain annotation for each model (and alignments):
>> TctA  Tripartite tricarboxylate transporter TctA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.5  47.3  7.7e-146  4.6e-142       1     409 []      20     439 ..      20     439 .. 0.98

  Alignments for each domain:
  == domain 1  score: 473.5 bits;  conditional E-value: 7.7e-146
        TctA   1 LllvllGvllGtliGllPGlhatlavalllpltf..gldpeaalilllgiyvgaifggsipaillgvPGtpssvatvldgyplakqGrageAlrlaaig 97 
                 Ll++l G+++Gt++GllPGl+++++va+l+pl+f  +l++e+alill+ +y+g  +gg i++ill+vPG++ +++t+ldgyp+a+qG+ag Al+++a++
  EHT99871.1  20 LLIALTGCFIGTIVGLLPGLGPINGVAILMPLAFalHLPAESALILLATVYLGCEYGGRISSILLNVPGDAGAIMTALDGYPMAQQGKAGVALSVSAVS 118
                 799*******************************8888************************************************************* PP

        TctA  98 SfiGglvsvllllllapllakvalkfgpaeyfalillglvliailseksllkglialllglllgtvgldpnsgtpRftfgsielldgislvpvliGlFg 196
                 Sf+G +++++ ++l+aplla+++l+fgpaeyfal++++++++++++++++lk+++++l+gl ++tvg+d n+g++Rftf+s++l+dgi++v+v+iGlF 
  EHT99871.1 119 SFVGSTIAIIGIILFAPLLARWSLAFGPAEYFALMVFAIACLGSMMSQNPLKSFLSALIGLSMATVGVDANTGVYRFTFDSVHLSDGIQFVVVVIGLFS 217
                 *************************************************************************************************** PP

        TctA 197 iselltsleskskip..........lslkdlkkslptilrgsliGtivGilPgvGasiaaflayavakrlskkpekfgkgaiegvaapeaannaaagga 285
                 +se+l +les+++ +           ++k+  +s+ + lr+s+iG++vG+lPg+Ga+ia+ +ay ++k++s  +++fgkg+i+gvaapeaanna+a+g+
  EHT99871.1 218 VSEILLMLESTHTGQkvvrasgrmmFNMKEAAQSTGATLRSSFIGFFVGVLPGAGATIASAIAYMTEKKISG-SDQFGKGDIRGVAAPEAANNASACGS 315
                 ********98766658888888765489999999***********************************985.589*********************** PP

        TctA 286 liplltlgipgsgvaavllgallihglqpgpeLftenpelvyallasllianvlllvlgllliklfakllkipkelLlpiilvllvigayalnnslfdv 384
                 +ip+ltl ipgsg++av+ gal++++++pgp +fte+p++v++l+a+lli+nv+ll++++++i++fa++l+ip ++L+p+i++++++g+ya+++++fd+
  EHT99871.1 316 FIPMLTLCIPGSGTTAVMVGALTLYNITPGPAMFTEQPDIVWGLIAALLIGNVMLLIMNIPMINVFARMLTIPLWFLVPAIAAISAVGVYAVHSTTFDL 414
                 *************************************************************************************************** PP

        TctA 385 lvmlifgvlGlllrrlgvplaplvl 409
                 l+m+ +gv+G++lr++++p++pl+l
  EHT99871.1 415 LLMVGLGVFGYILRKMDFPMSPLIL 439
                 ***********************97 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       1.3   7.9e+03     225     245 ..     112     132 ..      90     137 .. 0.58
   2 ?   -1.2   0.2      0.19   1.2e+03     158     219 ..     169     235 ..     155     257 .. 0.54
   3 ?   11.9   0.2     2e-05      0.12     230     266 ..     462     498 ..     445     500 .] 0.77

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.3
      Stevor 225 aasaassafepygiaalvlli 245
                  + +a+s f    ia++ +++
  EHT99871.1 112 LSVSAVSSFVGSTIAIIGIIL 132
                 244556666666666655554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.19
      Stevor 158 vgsvlltliglaaakaaavaa....kvalsaealkk.lasslsilnlfsesslesalkaavsaaaas 219
                 + s+l +ligl +a+  + a     + ++ + +l+  +  ++ ++ lfs s +  +l+++ + + + 
  EHT99871.1 169 LKSFLSALIGLSMATVGVDANtgvyRFTFDSVHLSDgIQFVVVVIGLFSVSEILLMLESTHTGQKVV 235
                 5666777777777665444332213333333333330334455667777777777666444444433 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 2e-05
      Stevor 230 ssafepygiaalvllilavvliiLYiwlyrRRKnSwk 266
                 ++++    ia ++l++ + vli+ ++w + RRK    
  EHT99871.1 462 MAILWESPIAKVLLILAVAVLIVPFVWKRLRRKATPA 498
                 566666678777777777799999*********8755 PP

>> DUF3413  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.4   0.00028       1.7      58     159 ..     376     494 ..     356     499 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00028
     DUF3413  58 sflafliyllvlfpltflipsrrllr..glaviiatlglilLlvDtevf....qqyklHLnpvvlelllngeqselsss............wllllilv 138
                  ++ +++ +l++ pl fl+p   ++   g+ ++ +t++ +lL+v   vf    +++ + ++p++l ++l +  ++  +             w + ++ v
  EHT99871.1 376 PMINVFARMLTI-PLWFLVPAIAAISavGVYAVHSTTFDLLLMVGLGVFgyilRKMDFPMSPLILGFVLGEMLEQNLRRalsisngemailWESPIAKV 473
                 566777788888.999999987776511455677888888899888888444468899999999999998866555555688999999999******** PP

     DUF3413 139 lvilllelllanlvwkklrkl 159
                 l+il++++l+  +vwk+lr++
  EHT99871.1 474 LLILAVAVLIVPFVWKRLRRK 494
                 ******************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 3776.75
//
Query:       EHT99872.1  [L=346]
Description: putative flagellar assembly regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00082   20.4   4.5     0.0047   17.9   1.8    2.9  2  DUF1018   Protein of unknown function (DUF1018)


Domain annotation for each model (and alignments):
>> DUF1018  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.04   7.1e+02      10      48 ..      65     103 ..      60     123 .. 0.85
   2 !   17.9   1.8   2.6e-07    0.0047       8      57 ..     124     189 ..     120     291 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.04
     DUF1018  10 LerltgktSakdLtdaelakvlaeLkalgfkpkskkkak 48 
                 L++ +g++S ++L+ + + +  + L+a+ +++++  + +
  EHT99872.1  65 LRHEVGVKSEAELQSRHFPAAEQFLNARLAQVQNGHATR 103
                 78899***********99999999999999998776655 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.6e-07
     DUF1018   8 alLerltgktSakdLtdaelakvlaeLkalgfkpkskkkakrkkpar................kat 57 
                 +++++++g+t  ++Lt+++l++vl +L++ ++   ++++++++ ++                 +at
  EHT99872.1 124 DFIRQQFGQTVLSALTQDQLRQVLTMLQNGQMAIPQPQQSRTSDRSLlpaehqalnqqivrlaAAT 189
                 67899************************9977777766665544337755544444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2792.47
//
Query:       EHT99873.1  [L=147]
Description: rhodanese family sulfurtransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-13   49.4   0.0    7.1e-13   49.0   0.0    1.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0     4e-17   7.1e-13      10     106 ..      39     122 ..      28     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 4e-17
   Rhodanese  10 ekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaa..aallkklGyknvsvldGGfkawke 106
                 + ++++++D+R++e+Y  ghI gA+++             p  e++e+  ++ +d++k  v+ycdg g+  ++  a++l  lG  +v+ l GG++ wk+
  EHT99873.1  39 QVQGIVVVDARQAEAYRGGHICGAISF-------------PHREMNEASTAR-LDRNKVYVTYCDGIGCNGSTkaAHQLALLG-FQVKELTGGLDFWKR 122
                 335556*********************.............999999999997.999***********99666644778888**.7************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1140.28
//
Query:       EHT99874.1  [L=479]
Description: GntR family transcriptional regulator/aminotransferase class I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-23   82.7   0.0    4.6e-23   82.0   0.0    1.4  1  Aminotran_1_2  Aminotransferase class I and II
    1.1e-15   57.0   0.1    3.4e-15   55.4   0.1    1.9  1  GntR           Bacterial regulatory proteins, gntR family
     0.0062   16.5   0.1     0.0062   16.5   0.1    2.2  3  HTH_Crp_2      Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.028   14.2   0.1      0.099   12.4   0.0    1.9  2  LexA_DNA_bind  LexA DNA binding domain
      0.035   13.8   0.0      0.035   13.8   0.0    2.7  3  HTH_41         Helix-turn-helix domain
       0.14   12.2   3.9       0.32   11.0   0.9    2.4  2  GPP34          Golgi phosphoprotein 3 (GPP34)
       0.16   12.3   0.0       0.37   11.2   0.0    1.6  1  Rrf2           Transcriptional regulator


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.8e-26   4.6e-23      26     295 ..     141     392 ..     121     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 1.8e-26
                    HHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEE CS
  Aminotran_1_2  26 aekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryp 121
                    a +  +++g+++  yg++ g+  l++ala++l  s ++  ++e +vv ++ +++++++l+ +l ++pgd++++ +p ya   n++ ++g+ v+ ++
     EHT99874.1 141 ARI-QHSEGQSVMGYGDPSGYMPLRHALADYLALSRGIHCQPE-QVVILTSSQQALQLLALML-VDPGDNVWMEEPGYAGARNAFLAAGARVRGIS 233
                    344.49*************************************.9999999999999999999.99****************************** PP

                    BEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEE CS
  Aminotran_1_2 122 lyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivg 217
                            +d ++   +        + + + l+ s + PtG++++l+   + ld a++++ +l+ D+  ++f +++  a ++++ ++++  ++++g
     EHT99874.1 234 --------VDGQGAVPQPGA-----A-KLMYLTPSHQYPTGVALSLPRRLAWLDWARRNGSWLIEDDYDSEFHYDERPA-PALHALDRDQRVITLG 314
                    ........777777763333.....3.23556778888************************************96555.55999999999***** PP

                    ESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS CS
  Aminotran_1_2 218 slsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael 295
                    ++sK++  + +R+++ ++ +a+v+   ++ + +   s+ll++av+aa   +   +s+l  mrq +q rr++l +++++ 
     EHT99874.1 315 TFSKSL-FPSLRLAWMVVPEALVEPSGRVRSILDGhSALLPQAVTAAFMQQGHFASHLRLMRQLYQCRRDRLLEQIEQR 392
                    *****9.8999******************999999**************************************999776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   1.3e-18   3.4e-15       3      64 .]      19      80 ..      17      80 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.3e-18
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++ + Lr++I + ++++G+kLPs r+La+ +  sr tv  A+ +Le+eg++ r+ grG fV
  EHT99874.1 19 DRLCATLRQWIETAHIQAGQKLPSTRQLATDLTLSRVTVEAAYAQLESEGYLRRETGRGSFV 80
                677899******************************************************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.4e-06    0.0062       2      57 ..      20      80 ..      19      88 .. 0.71
   2 ?   -2.8   0.0       2.5   6.5e+03      25      35 ..     165     175 ..     163     176 .. 0.83
   3 ?   -3.7   0.3       4.8   1.2e+04       2      50 ..     372     385 ..     372     394 .. 0.45

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.4e-06
                HHHHHHHHHHCTTT.C.EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ETEE..E CS
   HTH_Crp_2  2 RlArfLlrlaerag.g.eielpltqeelAsmlGltretvsrilseLkreglis..rgrr..i 57
                Rl+++L ++ e+a  +   +lp + ++lA  l l+r+tv  + ++L+ eg+++  +gr+  +
  EHT99874.1 20 RLCATLRQWIETAHiQaGQKLP-STRQLATDLTLSRVTVEAAYAQLESEGYLRreTGRGsfV 80
                9999998885543221234576.6679**************************533554553 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
                 HHHHHHTTSSH CS
   HTH_Crp_2  25 eelAsmlGltr 35 
                   lA++l l+r
  EHT99874.1 165 HALADYLALSR 175
                 56999999998 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.8
                 HHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTS CS
   HTH_Crp_2   2 RlArfLlrlaeraggeielpltqeelAsmlGltretvsrilseLkregl 50 
                 Rl r L++  +r                                  + l
  EHT99874.1 372 RLMRQLYQC-RR----------------------------------DRL 385
                 566666653.33..................................222 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05     0.099      14      62 ..      28      76 ..      22      77 .. 0.89
   2 ?   -3.7   0.0       4.3   1.1e+04       1       9 [.      96     104 ..      93     107 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
                   HHH.HHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG- CS
  LexA_DNA_bind 14 lik.asieetgypPsireiaralglkSpsaveehLkaLerKGyierdpgk 62
                   +i+ a+i+  +  Ps r++a  l l+   +ve   + Le  Gy++r+ g+
     EHT99874.1 28 WIEtAHIQAGQKLPSTRQLATDLTLS-RVTVEAAYAQLESEGYLRRETGR 76
                   5643689999999************7.99*****************9886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
                    XX---HHHH CS
  LexA_DNA_bind   1 mkkLTerQr 9  
                    m  L++r +
     EHT99874.1  96 MARLSRRGQ 104
                    444555554 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-05     0.035       1      35 [.      35      69 ..      35      80 .. 0.88
   2 ?   -2.9   0.1       2.2   5.8e+03      31      42 ..      92     103 ..      90     104 .. 0.82
   3 ?   -2.2   0.1       1.4   3.5e+03      22      38 ..     405     422 ..     404     424 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
      HTH_41  1 kvGdRlktIeelakeleLSvGlvQkALklLeddka 35
                ++G++l++  +la +l LS+ +v +A   Le+++ 
  EHT99874.1 35 QAGQKLPSTRQLATDLTLSRVTVEAAYAQLESEGY 69
                68******************************995 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
      HTH_41  31 eddkaislerrG 42 
                  ++++  l+rrG
  EHT99874.1  92 RASRMARLSRRG 103
                 67889999***9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
      HTH_41  22 lvQkALklLe.ddkaisl 38 
                   Q A++lL+ d++a ++
  EHT99874.1 405 GLQLAVNLLQgDEGALTV 422
                 579999999846677666 PP

>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.9   0.00012      0.32      80     139 ..      25     102 ..      17     154 .. 0.60
   2 ?    1.2   0.1      0.13   3.2e+02     128     164 ..     381     431 ..     304     446 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
       GPP34  80 vktwvdlls....................ksvrervakgLvdkGilrtekrr..flglfdmtthpvadtaakeavrrrvraa 139
                 +++w++  +                    + + e+ +++L+++G lr+e+ r  f+      t+p + +++++  ++r+ + 
  EHT99874.1  25 LRQWIETAHiqagqklpstrqlatdltlsRVTVEAAYAQLESEGYLRRETGRgsFV----AITLPDKAPRIRASRMARLSRR 102
                 56666555556666666665555555555788888**************9996444....4467777777777766665543 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
       GPP34 128 akeavrrrvraaltsgepadp..............rtaaLvallaaaglle 164
                  ++++++++++ lt+  ++ p              +++aL++ +a agll 
  EHT99874.1 381 RRDRLLEQIEQRLTPWLTPFPcpgglqlavnllqgDEGALTVQAANAGLLL 431
                 345556666666666444433445555666666667788888888888864 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.37      21      62 ..      36      77 ..      23      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                ++++  s++++a+   +s++ +e   a+L+ +g+++ + G+g
  EHT99874.1 36 AGQKLPSTRQLATDLTLSRVTVEAAYAQLESEGYLRRETGRG 77
                455568999*****************************9994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3497.82
//
Query:       EHT99875.1  [L=406]
Description: 3-oxoacyl-[acyl-carrier-protein] synthase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-40  137.6   1.8    8.8e-40  136.9   1.8    1.3  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    5.5e-30  103.8   0.3    1.4e-29  102.5   0.3    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    0.00056   19.4   0.1     0.0011   18.4   0.1    1.4  1  Thiolase_N       Thiolase, N-terminal domain
     0.0029   18.1   0.0     0.0052   17.2   0.0    1.5  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   1.8     2e-43   8.8e-40       2     253 .]       2     246 ..       1     246 [. 0.88

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 2e-43
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++ +i+G+g++ + gn+ +e+  +L+egr++i+ + +    + k++  ++++ g +k             +++  i  + ++ m+ ++ ++   ++
     EHT99875.1   2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGIT-FSQ----EMKYSGMRSHVWGNVKL------------DTTGLIDRKIVRFMSDASIYAYLSME 80 
                    5779*****************************.552....7888888999****999............778888889999************** PP

                    HHHHHHTS-HHTC.TTGGEEEEEEESSTHH.....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeel.dgsrvgvfiGvgagdy.....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavq 187
                    ea++d+gl++e+  +++rvg ++G+g g+      +a a+ +++g  + + p++v++++a+ +++ ++  ++++G+++++++AC++s+  +  av+
     EHT99875.1  81 EAIKDSGLSNEAYqNNPRVGLIAGSGGGSPrfqvfGADAMRSPRG-LKAVGPYVVTKAMASGVSASLATPFKIHGVNYSISSACATSAHCIGNAVE 175
                    ********9988756667**********44455776656666666.899999888889*****************************66666666* PP

                    HHHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT..SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 188 slrsgeadvalaGGvellltpeavagfsaag.llspd..grckafdpka...dGfvlGEGvGavvLkrleda 253
                    +++ g++d+++aGG e  l++e  + f+a+g l++++   ++ka++ ++   dGfv++ G G+vv+++le+a
     EHT99875.1 176 QIQLGKQDIVFAGGGE-ELCWEMACEFDAMGaLSTRYndTPEKASRTYDnerDGFVIAGGGGMVVVEELEHA 246
                    ****************.999999999*****555555888899999999999*****************987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.3     3e-33   1.4e-29       1     117 [.     254     361 ..     254     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3e-33
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+i+g++++sdga   + ap+ge++ r+++ a++ +++    +dy++ hgt+tp+gD +El a+++vfge++     +++++K+++GH+++Aa
       EHT99875.1 254 YAEIVGYGATSDGA--DMVAPSGEGAVRCMKMAMQGVDTP---IDYLNSHGTSTPVGDVKELGAIREVFGENT----PYISATKAMTGHSLGAA 338
                      8**********998..567788****************99...****************************98....89*************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gv e+i ++l+l+hg i+p++n+
       EHT99875.1 339 GVQEAIYSLLMLEHGFIAPSINI 361
                      *********************97 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.4e-07    0.0011      79     118 ..     157     196 ..     134     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-07
                 EEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS CS
  Thiolase_N  79 vtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsna 118
                   +  +c+ +++ + +a+++i+ g+ d+v agG+E++   
  EHT99875.1 157 YSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE 196
                 57899******************************98755 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0052      11      46 ..     369     404 ..     357     406 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
  KAsynt_C_assoc  11 grlkVvteptpwpggivgvNsfGfGGsnvHviLksn 46 
                       +++vtept+   ++v  NsfGfGG+n+ + L+++
      EHT99875.1 369 EGMNIVTEPTEKALTTVMSNSFGFGGTNATLTLRKY 404
                     46999************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3113.40
//
Query:       EHT99876.1  [L=670]
Description: 5-carboxymethylamino-methyl-2-thiouridine oxidoreductase/5-aminomethyl-2-thiouridine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-48  161.6   0.0    1.1e-47  160.9   0.0    1.4  1  Methyltransf_30  S-adenosyl-L-methionine-dependent methyltran
    1.1e-46  160.1   3.5    1.7e-46  159.5   3.5    1.3  1  DAO              FAD dependent oxidoreductase
    0.00012   22.1   0.2      0.064   13.2   0.1    2.5  2  NAD_binding_9    FAD-NAD(P)-binding
    0.00086   19.5   0.1     0.0049   17.1   0.1    2.4  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.015   14.5   0.0       0.51    9.5   0.0    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.015   13.9   0.0       0.19   10.2   0.0    2.0  2  Mqo              Malate:quinone oxidoreductase (Mqo)
      0.034   14.2   0.9      0.074   13.0   0.0    2.0  2  Glyco_transf_4   Glycosyltransferase Family 4
      0.064   12.8   0.0      0.096   12.3   0.0    1.2  1  ThiI             Thiamine biosynthesis protein (ThiI)
       0.18   11.0   0.1         20    4.3   0.0    2.3  2  FAD_binding_3    FAD binding domain


Domain annotation for each model (and alignments):
>> Methyltransf_30  S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.0   5.7e-51   1.1e-47       3     123 ..     120     244 ..     118     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 5.7e-51
                      GHHHHHHHHHHTS-S-SEEEEEEETTTTEEEEEEES-HHHHHHHC-....T-EEEEEE-SS-TTTSGGGCSHHHHHHHHHHEEEEEEEEES--- CS
  Methyltransf_30   3 leelakallkeyllalaglqrlelaaeevtlklligdarealkeld....ekadawFlDgFsPaknPelwseellkelarllkkkgtlatyssA 92 
                      l+ +a +l++++++al+g+qrl ++a+++tl+l++gd+++ +++ d     ++dawFlDgF+P+knP++w++el++ +a+l++++gt+at+++A
       EHT99876.1 120 LAPWADQLQRQWPQALPGCQRLLFDAGRITLDLWLGDINALINNFDdslhRQVDAWFLDGFAPSKNPDMWTQELFQSMAALARPGGTFATFTAA 213
                      567999****************************************99999******************************************* PP

                      HHHHHHHHHTT-EEEEEE-CTCSSEEEEEES CS
  Methyltransf_30  93 gavrrgLkeaGfkvekrkgfgrKremlkask 123
                      g+vrrgL+eaGf+v++rkgfg Kreml++s+
       EHT99876.1 214 GFVRRGLQEAGFAVTRRKGFGPKREMLCGSL 244
                      ****************************986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   3.5   8.4e-50   1.7e-46       2     351 ..     267     635 ..     266     636 .. 0.86

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 8.4e-50
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelea 98 
                 v+ +GGGi+ ++ A++L rrg  Vtl+++++ ++ gaS++ +g l++ l    +  +la +  +a+ + r+l + l+++++++++G+l+l++d+++  +
  EHT99876.1 267 VALVGGGIASATLALALLRRGwrVTLYCADEAPALGASSNRQGALYPLLNQHDP--ALATFFPAAFTFARRLYDALDLPFEHDWSGVLQLGWDDKSASK 363
                 788***************************99***************9964443..68899999999998888888999*************9999999 PP

                 HHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEE CS
         DAO  99 ldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgendaadav 196
                 ++++la++l+  + +  ++++e+++l+  ++ ++g+++yp +g++ pa+lt +l+++ e+lG +++  ++vt+l++ + ++w++   + p    +  av
  EHT99876.1 364 IEQMLAMGLPEEIAH-GVTQQEAEALAK-VALHCGGIYYPMGGWLAPAELTSSLLSRGEQLGLRVHWLHRVTALSQ-NAQGWTLTfSEQPDV--HHAAV 457
                 999999988777754.566666777775.22357****************************************65.5689***66433332..3256* PP

                 EE--GGGHHHHHTTCTTT.SEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE..TTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHH CS
         DAO 197 VnaaGawsdllgllkeld.lpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr..kdgrvlvGgtadeesgdddpevdeedidelleal 292
                 V+a+G++ + l   ++ d lp++pv gqv ++ p+s       a+ +++ t+ + +g y+tp      ++++G+++  ++g++++++ e+d +e  ++l
  EHT99876.1 458 VLANGHHLTDL---PQTDaLPVYPVAGQVSHV-PVSP------ALSALR-TVLCYDG-YLTPAspQFATHCIGASY--HRGETSTAFREADQQENHRRL 542
                 *******7755...555447************.8877......444555.8999998.999953344679****97..8888889************** PP

                 HHHSGG.....GCGEEE..EEEEEEE.ETTSSEEEEEEE..........................TEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 293 rklfPq.....lgdvlr..kwaGlrp.lpdglpligetp..........................gvkglylatGhsghGltlapatGkllae 351
                 ++++P      + dv++  +++G+r+ ++d+lp++g +p                           ++glyl    +++Gl +ap+++++la 
  EHT99876.1 543 QHCLPHsdwvnVVDVSQnaARSGVRCaTRDHLPMVGCAPdyaatlalyadlaqqnargaaipaapYFPGLYLFGALGSRGLCSAPLAAEVLAA 635
                 ******6554337788556*******779********99***************************************************996 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0041       8.2       1      42 [.     268     305 ..     268     334 .. 0.76
   2 !   13.2   0.1   3.2e-05     0.064     106     155 ..     414     463 ..     409     464 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0041
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvw 42 
                    a+vG+G++ ++++ +Ll+r   + ++++ + d++++  g   
     EHT99876.1 268 ALVGGGIASATLALALLRR---GWRVTLYCADEAPAL-GASS 305
                    79*****************...699999999999885.4443 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.2e-05
  NAD_binding_9 106 ellarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +ll+r  e++ ++vh  ++v++l+++a+g++++ +++  ++  aVvLA Gh
     EHT99876.1 414 SLLSRG-EQLGLRVHwLHRVTALSQNAQGWTLTFSEQPDVHHAAVVLANGH 463
                    555555.45677777578********************************9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.5e-06    0.0049       2      66 ..     270     338 ..     269     340 .. 0.81
   2 ?   -2.3   0.0       2.7   5.3e+03      22      49 ..     555     585 ..     554     589 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
                    E--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT.....CEECTS---EEETTHHHHCHHHHC CS
  NAD_binding_8   2 vGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg.....vrvdygahifhgsgyypnvrrllr 66 
                    vG+G++++++A +L ++g +v+l+ + + +   a+s++ +      + +d    +f++   ++ +rrl++
     EHT99876.1 270 VGGGIASATLALALLRRGWRVTLYCADEAPALGASSNRQGAlypllNQHDPALATFFPA-AFTFARRLYD 338
                    9***********************99999988888888866666678888888888874.4666666665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
                    EEEE-SSSSSSGGG-EECE...TTCEECTS- CS
  NAD_binding_8  22 vlllekrdrlGGraasyev...pgvrvdyga 49 
                    v++ +++ r G r+a++++    g++ dy a
     EHT99876.1 555 VDVSQNAARSGVRCATRDHlpmVGCAPDYAA 585
                    5677788999999999988644356666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00026      0.51       2      30 ..     266     294 ..     265     319 .. 0.82
   2 ?    2.6   0.0     0.034        68     187     240 ..     413     466 ..     404     477 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00026
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve 30 
                  +v+ +GgG+A  ++al l + g +vtl+ 
   EHT99876.1 266 EVALVGGGIASATLALALLRRGWRVTLYC 294
                  7999***********************93 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.034
                  HHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrps 240
                    l  + e+ G +v++ ++v+++ +n +  +++ +++  +    vv+a G    
   EHT99876.1 413 SSLLSRGEQLGLRVHWLHRVTALSQNAQGWTLTFSEQPDVHHAAVVLANGHHLT 466
                  5556667889******************99988888888999999999997665 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.7e-05      0.19       2      45 ..     264     305 ..     263     310 .. 0.80
   2 ?    1.4   0.0     0.046        92     181     224 ..     410     451 ..     399     483 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.7e-05
         Mqo   2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeessn 45 
                 +++v l+G+Gi satl+  l  l+  ++++++   ++ a  +s+
  EHT99876.1 264 EKEVALVGGGIASATLALAL--LRRGWRVTLYCADEAPALGASS 305
                 579*************9765..7888999988888888777665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.046
         Mqo 181 altrqllkalekkkgvelklkhevkdlkreedgkWkvkvkdlkt 224
                 +lt++ll++ e + g++++  h+v+ l+++++g W+++++++ +
  EHT99876.1 410 ELTSSLLSRGE-QLGLRVHWLHRVTALSQNAQG-WTLTFSEQPD 451
                 78999998885.599*************99985.***9987633 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       4.2   8.5e+03      71      89 ..     102     124 ..      76     132 .. 0.63
   2 ?   13.0   0.0   3.7e-05     0.074       6      67 ..     274     339 ..     271     356 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.2
  Glyco_transf_4  71 e....kpDvvHahspaalgaall 89 
                          + D+  ah++++++a ++
      EHT99876.1 102 KfpltQADLMAAHQHWPVLAPWA 124
                     14555788887887777766655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.7e-05
  Glyco_transf_4   6 rhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrl 67 
                         +La aL rrG++Vt+++ +  ++l+        l+  +    + l   ++  ++f+rrl  +
      EHT99876.1 274 IASATLALALLRRGWRVTLYCADEAPALGASSnrqgALYPLLNQHDPALATFFPAAFTFARRLYDA 339
                     5557899****************9999999944443333333333333444444455555555444 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.096       3      44 ..     263     304 ..     261     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
        ThiI   3 qgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtsee 44 
                 ++k +aL+ gGi S   a  ll+RG rv l   +++p  ++ 
  EHT99876.1 263 SEKEVALVGGGIASATLALALLRRGWRVTLYCADEAPALGAS 304
                 6899************************99887777665554 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0098        20       3      29 ..     266     292 ..     264     297 .. 0.93
   2 ?    4.3   0.0    0.0099        20      61     143 ..     366     447 ..     362     464 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0098
                    EEEEE--SHHHHHHHHHHHHTTHHEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvl 29 
                    +V+ VG+G a ++lal L ++G rv+l
     EHT99876.1 266 EVALVGGGIASATLALALLRRGWRVTL 292
                    89********************99986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0099
                    HHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHC...ST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEE CS
  FAD_binding_3  61 rilaegapnelmgealynelsdtpkaradleless...pervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevr 143
                    ++la+g p+e+ + ++++e     +a a++ l+++   +++  ++   el+  L+++ e+ gl+v++ ++v++l q+ +g t ++ 
     EHT99876.1 366 QMLAMGLPEEIAHGVTQQE----AEALAKVALHCGgiyYPMGGWLAPAELTSSLLSRGEQLGLRVHWLHRVTALSQNAQGWTLTFS 447
                    7888888888888888888....56666666554411145556677788888888888********************99886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4548.14
//
Query:       EHT99877.1  [L=94]
Description: YfcL family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-35  119.0   0.3    9.9e-35  118.8   0.3    1.0  1  YfcL      YfcL protein


Domain annotation for each model (and alignments):
>> YfcL  YfcL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.3   5.5e-39   9.9e-35       2      84 ..       4      86 ..       3      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 5.5e-39
        YfcL  2 efeekleeliddvvekasddeLFaggYLrGhlalavaeleeegetslealkekveeslekAikkgELspaDqalVkelWqeLk 84
                efe+++++lidd+ve+asddeLFa+gYLrGhl+lavae+e+ ++++ +al+ +v++sl++Ai++gELsp+DqalV  +W++L+
  EHT99877.1  4 EFEARILALIDDMVEHASDDELFASGYLRGHLTLAVAEVEQLDDHTPQALQIQVTRSLQNAIAAGELSPRDQALVIGMWDNLF 86
                8*******************************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 748.90
//
Query:       EHT99878.1  [L=180]
Description: uncharacterized DUF462 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-80  267.7   0.1    3.2e-80  267.5   0.1    1.0  1  EpmC      Elongation factor P hydroxylase


Domain annotation for each model (and alignments):
>> EpmC  Elongation factor P hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.5   0.1   1.8e-84   3.2e-80       1     163 []      12     174 ..      12     174 .. 0.98

  Alignments for each domain:
  == domain 1  score: 267.5 bits;  conditional E-value: 1.8e-84
        EpmC   1 lfnelfaeeyntrLvkgddePiYlPadeeeelhriifahgyfasalheiahWciaGeerrkleDygYWYePDGrdaeqqaefekvevkPqalewllala 99 
                 lf+++f+e+++trL+kgddePiYlPad+e++++r++fahg++asalhei+hWciaGe+rrkl+D+gYWY+PDGrda++q++fe+vevkPqalew++++a
  EHT99878.1  12 LFDRCFSEDFQTRLIKGDDEPIYLPADSESPWNRVVFAHGFYASALHEISHWCIAGEARRKLVDFGYWYCPDGRDAQTQSQFESVEVKPQALEWMFCVA 110
                 7************************************************************************************************** PP

        EpmC 100 aglkfkvsvDnleg.eeadrkafkkkvaeqvlaylekglpkraekflealaefyetekslkaekf 163
                 ag++f+vs+Dn +g +e+dr af++kv++qv++yl++g+p+r+++f++alaefy+++ sl+a++f
  EHT99878.1 111 AGFPFNVSCDNRDGdCEPDRIAFQRKVHAQVMSYLASGIPARPARFISALAEFYGRP-SLTASQF 174
                 **************9******************************************.8888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1624.59
//
Query:       EHT99879.1  [L=267]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-43  146.7  31.6      1e-42  146.4  31.6    1.0  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4  31.6   5.8e-47     1e-42       1     236 []      14     249 ..      14     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 146.4 bits;  conditional E-value: 5.8e-47
        TauE   1 lllagllaGfvagllGiGggliavPlLll.llppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgv 98 
                 l++++llaGf+++++G Gggl+++P Ll+ +l+pa+a+at+ l +v +s+s++l + rrg++ +r  +l ++++++Ga+ Ga+l ++l +++l+ ++++
  EHT99879.1  14 LFFIALLAGFIDSIAG-GGGLLTLPSLLAaGLSPAQALATNKLQSVGGSFSASLYFVRRGAITLREQRLNIAMTFLGAVGGAVLIQHLQADFLRQILPL 111
                 5899************.************669******************************************************************* PP

        TauE  99 lllllallmllrkkrsrakgrerrptaillvliggl.vGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavdwplll 196
                 ll+++++++ll++++ +++ r +r + + ++ligg+ +G+++G++G G+G++ +  ++ l+g++l ka+a + ll++++++ ++l+++++g v w ++l
  EHT99879.1 112 LLIAIGMWFLLMPRIGEED-RVHRLRGLPFALIGGGcIGFYDGFFGPGAGSFYALGFVTLCGFNLAKATAHAKLLNFTSNFGSLLFFIFGGKVVWGTGL 209
                 ***********99987777.55555555566666666************************************************************** PP

        TauE 197 lllpgallGallGarlarrlsertlrrlfallllvlgvkl 236
                 ++++ga++Ga lGarl+    ++ +r +++++ +v+++kl
  EHT99879.1 210 IMMLGAVCGARLGARLVLARGQKLIRPMVVIVSAVMSMKL 249
                 *******************9***************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1946.02
//
Query:       EHT99880.1  [L=272]
Description: murein DD-endopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-95  318.4   0.0    3.3e-95  318.2   0.0    1.0  1  Peptidase_M74  Penicillin-insensitive murein endopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M74  Penicillin-insensitive murein endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.2   0.0   1.8e-99   3.3e-95       1     239 []      35     268 ..      35     268 .. 0.96

  Alignments for each domain:
  == domain 1  score: 318.2 bits;  conditional E-value: 1.8e-99
                    EEEETTEEEEES-EE--S--SSEEES-GGG--BEE-HHHHHHHHHHHHHHHHTTS--EEE---B-TT----SSS-S--TTS-EEEEES---..... CS
  Peptidase_M74   1 siGsyakGClaGaealpeegegyqvmrlsrnrnyghpeliaflerlakkakkaglkgllvgDlsqprGGpmlsgHaSHqiGLDvDiwltlpaekre 96 
                    +iG +a+GC+ Ga+alp+++++yqvmr++++r++ghp+li f++rla +a++ +l ++l+gD+++++GG+++sgHaSHq+GLDvDiwl+lp  k++
     EHT99880.1  35 AIGGFANGCIVGAQALPLNSPDYQVMRQDQRRYFGHPDLILFIQRLAMQAHNLQLGNVLIGDMGMAAGGRFSSGHASHQTGLDVDIWLQLP--KTR 128
                    69***************************************************************************************65..899 PP

                    --HHHHHS------B-TTSSSB-TTT--HHHHHHHHHHHHSTTEEEEEE-HHHHHHHHHHHTT--GGGGGEEE-SS-SSEEEEEE---TT-TTB-- CS
  Peptidase_M74  97 lseeereklsalslvkkdklkvdekkwteehaklirlaasdpeveRifvnpaiKkalCeeakgdrswLrkvrPwlgHdaHfHvRlkCpagskeCee 192
                    +s+++  k ++l+lv++d+++v +++w++e a+li+laa+d++v+Ri+vnpaiKk+lC++a +drswL+kvrPw++H+aH+HvRl+Cp+gs++Cee
     EHT99880.1 129 WSAQQLLKPQPLDLVAADGRNVVARHWQPEIASLIKLAAKDEDVTRILVNPAIKKQLCTDAGTDRSWLHKVRPWFAHRAHMHVRLRCPQGSPDCEE 224
                    ************************************************************************************************ PP

                    -----SS--TTHHHHHTT--------------....---HHHHHHHH CS
  Peptidase_M74 193 qapvpagdGCgeelaswlskealkpkkkkkkkkkkkelpaaCqavla 239
                    qap+p+gdGCg+el+sw+ +++  ++   + k++++ lp aCqa+l+
     EHT99880.1 225 QAPPPPGDGCGAELQSWFLPKQPGSA---PVKREPPPLPPACQALLD 268
                    ******************99544444...34445579*******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2036.94
//
Query:       EHT99881.1  [L=361]
Description: chorismate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     8e-143  475.0   0.2   9.1e-143  474.9   0.2    1.0  1  Chorismate_synt  Chorismate synthase
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.055   13.5   0.0    1.6  2  Nfu_N            Scaffold protein Nfu/NifU N terminal


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.9   0.2    1e-146  9.1e-143       1     327 []      10     345 ..      10     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 474.9 bits;  conditional E-value: 1e-146
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTSBE- CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeikevpR 94 
                      +rvttfGeShg alg+++dgvp+g++l+e+diq++Ld Rrpg+s++ttqr+E D+v+ilsGvfeg+t+Gt+i llieN+dqrs+dy  ik+ +R
       EHT99881.1  10 FRVTTFGESHGIALGCIVDGVPPGIPLTEADIQHDLDHRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYGAIKDLFR 103
                      89******************************************************************************************** PP

                      TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE.......CHHHHHTT-BS-CCCHHHHHHHHHHHH CS
  Chorismate_synt  95 pgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.lgieivayvssigei.......ekeaenpvrcpdeeaaeemeeaieeak 180
                      pgHAD+ty++kYg+rd+rgggrsSaReTa+rvaaGa+akk+L+  +gi +++y+ +ig++       +  +enp++cpd+++ e++ e+++++k
       EHT99881.1 104 PGHADYTYEQKYGTRDYRGGGRSSARETAMRVAAGAIAKKYLHMqHGIVVRGYLAQIGDVacelkdwTIVEENPFFCPDADKLEALDELMRALK 197
                      ******************************************9768************888877655434889********************* PP

                      HTT--B-EEEEEEEES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--EEEE..SS-TTTTEETTEEBSS-EEEEEE CS
  Chorismate_synt 181 kegdslGgvvevvvkgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfeaaelkGseanDeivlr..ktnnaGGieGGisnGepivvrva 272
                      kegds+G+ v+v++++vp+GlGepvfd+lda+La+almsi+AvkgveiG+Gf++++++Gs+++Dei  +  ++n+aGGi+GGis+G++i +++a
       EHT99881.1 198 KEGDSVGAKVTVMAENVPPGLGEPVFDRLDADLAHALMSINAVKGVEIGDGFAVVNKRGSQHRDEIRANgfQSNHAGGILGGISSGQTISANLA 291
                      *******************************************************************5578*********************** PP

                      E--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 273 vKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladall 327
                      +Kp++si+ + kt++ +++e ve+ +kgrhDpcv +rav+++eam+a+vl+d+ll
       EHT99881.1 292 MKPTSSITVPGKTITRDGEE-VEMITKGRHDPCVGIRAVPIAEAMMAIVLMDHLL 345
                      ********************.********************************97 PP

>> Nfu_N  Scaffold protein Nfu/NifU N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-06     0.055      36      73 ..     227     264 ..     208     269 .. 0.87
   2 ?   -3.2   0.0      0.99   8.9e+03      15      33 ..     300     318 ..     294     339 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-06
       Nfu_N  36 asplakkLfkiegVksVfigsdFitvtkeddvdWeelk 73 
                 +  la +L++i+ Vk+V ig+ F  v+k  + + +e++
  EHT99881.1 227 DADLAHALMSINAVKGVEIGDGFAVVNKRGSQHRDEIR 264
                 4689************************9887776665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.99
       Nfu_N  15 lpgkellpegstaefksae 33 
                 +pgk+++++g+ +e+ ++ 
  EHT99881.1 300 VPGKTITRDGEEVEMITKG 318
                 6778888877666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3091.04
//
Query:       EHT99882.1  [L=310]
Description: ribosomal protein L3 N5-glutamine methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-18   65.2   0.0    1.3e-16   60.6   0.0    2.1  2  MTS              Methyltransferase small domain
    1.5e-10   41.0   0.0    2.2e-10   40.5   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    6.6e-10   39.6   0.0    1.4e-09   38.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.5e-06   27.9   0.0    2.1e-06   27.4   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    5.6e-06   26.0   0.0    8.5e-06   25.4   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00017   21.3   0.0    0.00038   20.2   0.0    1.5  2  Cons_hypoth95    Conserved hypothetical protein 95
    0.00018   22.2   0.0    0.00059   20.5   0.0    1.9  1  Methyltransf_12  Methyltransferase domain
    0.00021   21.1   0.8    0.00073   19.3   0.8    1.8  1  UPF0020          Putative RNA methylase family UPF0020
    0.00021   21.3   0.0    0.00034   20.6   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
    0.00033   20.1   0.0     0.0005   19.5   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0016   18.3   0.0     0.0028   17.4   0.0    1.3  1  Met_10           Met-10+ like-protein
     0.0017   17.7   0.0     0.0028   17.0   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
     0.0018   18.9   0.0     0.0039   17.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.064   12.7   0.0    1.8  2  Methyltransf_4   Putative methyltransferase
      0.031   13.5   0.0      0.048   12.9   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.036   13.9   0.0      0.082   12.7   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
      0.049   13.4   0.0      0.089   12.5   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)
      0.068   14.2   0.0       0.19   12.8   0.0    1.7  1  Methyltransf_24  Methyltransferase domain
      0.079   12.7   0.0       0.12   12.1   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
       0.16   11.2   0.0       0.36   10.0   0.0    1.5  1  N6_Mtase         N-6 DNA Methylase
       0.16   12.6   0.3        1.4    9.5   0.3    2.4  1  PrmC_N           PrmC N-terminal domain
       0.28   10.6   0.3       0.73    9.2   0.1    1.7  2  AviRa            RRNA methyltransferase AviRa


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.7e-19   1.3e-16      31     113 ..     132     216 ..     123     222 .. 0.90
   2 ?    2.3   0.0      0.13   1.1e+02     115     141 ..     238     265 ..     232     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.7e-19
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCHC CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagkat 113
                 + +++lD+++G G +++a+a + p+aev++vd+++ Al++a++n+e+++l   v+ +  d++ e+++ ++dliv+NPP+ + +++
  EHT99882.1 132 KPRHILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGLIhhVTPIRADLFRELPPVQYDLIVTNPPYVDAEDM 216
                 4568*********************************************986777889********************9988765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHEEEEEEEEE.EEET CS
         MTS 115 lavaeeliaeAkeaLkegGeLli.Vanr 141
                 l+++++++a A+ +L+e+G L++ V n+
  EHT99882.1 238 LKLVRRILACAPGYLSENGVLICeVGNS 265
                 57899***************99745555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.7e-13   2.2e-10       3     113 ..     132     264 ..     130     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.7e-13
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsn............. 81 
                      k  ++lD  +G+G ++++ a  ++p+aev  +Dis +a+ +A++n +++gl   v+  ++d +  l+    + ++Dli++n             
       EHT99882.1 132 KPRHILDMCTGSGCIAIACA-YAFPDAEVDAVDISHDALAVAEQNIEEHGLIhHVTPIRADLFReLP----PVQYDLIVTNppyvdaedmddlp 220
                      56689***************.99*****************************99**********899....467*******8888888777777 PP

  Methyltransf_31  82 .........evl....naladpdkileeiervlkpggilliedpr 113
                               + l    + l+    il  ++ +l+++g+l++e  +
       EHT99882.1 221 geyhhepelG-LaagsDGLKLVRRILACAPGYLSENGVLICEVGN 264
                      7666665542.1456777778888888999999999999999888 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.7e-12   1.4e-09       1      81 [.     136     215 ..     136     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.7e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgda.edlpfedgsfDlvvssgalhhlsded 81 
                      +Ld+++G+G +++a+a ++++a+v +vDis+++l+ a++++ee+gl  +v+ +++d+ ++lp    ++Dl+v +    +++ ed
       EHT99882.1 136 ILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGLihHVTPIRADLfRELPPV--QYDLIVTN--PPYVDAED 215
                      8******************99***********************************98889854..7****994..35566555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.6e-09   2.1e-06     161     233 ..     132     207 ..     122     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.6e-09
        PrmA 161 egeevlDvGtGSGiLaiaaa.kLgakkvvavDiDevAvkvakeNaelNkveaklev...alseellkeekadvivaN 233
                 + +++lD+ tGSG +aia a  +  ++v avDi + A+ va++N+e  ++ ++++     l +el+   ++d+iv N
  EHT99882.1 132 KPRHILDMCTGSGCIAIACAyAFPDAEVDAVDISHDALAVAEQNIEEHGLIHHVTPiraDLFRELPP-VQYDLIVTN 207
                 56799************965268999********************997766553211145566666.899****99 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0     1e-08   8.5e-06       3      80 ..     135     209 ..     133     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1e-08
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfe..kviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       ilD+++G+G  +i+ a  f+  +v a++i+++ la+a++N e  g  +++t++ +d+f  l       +++dl+++ pP
       EHT99882.1 135 HILDMCTGSGCIAIACAYAFPdaEVDAVDISHDALAVAEQNIEEHGLIHHVTPIRADLFRELPP-----VQYDLIVTNPP 209
                      79****************9963379*********************************987765.....45677777777 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.7e-07   0.00038      42     127 ..     133     214 ..     119     221 .. 0.85
   2 ?   -3.3   0.0       7.6   6.2e+03     140     155 ..     250     265 ..     244     274 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.7e-07
                    C-EEEETT-TTSHHHHHHH.HTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTC CS
  Cons_hypoth95  42 garvLDlfaGsGalglEAl.SRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakel 127
                      ++LD++ GsG +++ ++     +++ +v+ ++ a+++ ++n+ee +l ++++ ++ d +++l+       ++d++  +PPy + +
     EHT99882.1 133 PRHILDMCTGSGCIAIACAyAFPDAEVDAVDISHDALAVAEQNIEEHGLIHHVTPIRADLFRELPPV-----QYDLIVTNPPYVDAE 214
                    4689***********9765155668999********************9988888888888888766.....79*********8765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.6
                    T-EEEEEEEEEEEECC CS
  Cons_hypoth95 140 kllkenalvvveteke 155
                    + l+en+++++e  + 
     EHT99882.1 250 GYLSENGVLICEVGNS 265
                    7899999999997443 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.2e-07   0.00059       1      73 [.     137     207 ..     137     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.2e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas 73 
                      L+  +G+G ++ a++ ++pd+e+ +vDis +a++ a++ + +++    ++v+    dl+ + ++ ++Dl+v +
       EHT99882.1 137 LDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGL--IHHVTPIRADLFRELPPVQYDLIVTN 207
                      67889****************************666666666664..678888888888888889*****975 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.8   8.9e-07   0.00073      76     132 ..     156     211 ..     125     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.9e-07
                 H--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--.GGG--STTS---EEEE----- CS
     UPF0020  76 elklygsDldrrvvqgareNaekagvgdliefsqad.aakLrlkegevdvivtnpPYG 132
                 ++++ ++D+ + +++ a++N e+ g+ + ++   ad +++L+ +  ++d+ivtnpPY 
  EHT99882.1 156 DAEVDAVDISHDALAVAEQNIEEHGLIHHVTPIRADlFRELP-PV-QYDLIVTNPPYV 211
                 556889*******************99999877776368899.66.7**********6 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.2e-07   0.00034       9      87 ..     126     205 ..     123     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.2e-07
  Methyltransf_18   9 aslvekgs.rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvv 87 
                      a l++++  +++D +t  g ++i+ +      +v a+Di++ +l+ a++nie++gl ++++ + +d + +l + ++d +v
       EHT99882.1 126 AGLIPEKPrHILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGLIHHVTPIRADLFRELPPVQYDLIV 205
                      5677766559****************************************************999999999888888887 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   6.1e-07    0.0005      46      99 ..     131     184 ..     121     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 6.1e-07
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.T CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.n 99 
                       +++++lD+++G+g +a++ + +     +v+ +Di+++ L v+e+ ++e+g i +
       EHT99882.1 131 EKPRHILDMCTGSGCIAIACAYA-FPDAEVDAVDISHDALAVAEQNIEEHGLIhH 184
                      57889*************98865.5778**********************98744 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.5e-06    0.0028     102     178 ..     134     210 ..     121     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-06
                 -EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TT CS
      Met_10 102 evVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpk 178
                   ++d+  G G  ai++a    + +v a+d+  ++    ++ni+   + + v+pi +D    +++ + d +v n p+
  EHT99882.1 134 RHILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGLIHHVTPIRADLFRELPPVQYDLIVTNPPY 210
                 5689**************988999**********************************8666678888988888775 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.5e-06    0.0028      64     132 ..     134     205 ..     126     216 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-06
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HH.HHHHHHHHS.-----TTEEEEES-TTTS---..--SEEE CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDlpe.VveaAkehl.sageeervefvgGdffkdslP..eaDail 132
                     ++++D+  G+G +a a++ a+P  +v   D+++   + A++ + + g+ ++v+ +  d+f  +lP  + D+i+
      EHT99882.1 134 RHILDMCTGSGCIAIACAYAFPDAEVDAVDISHdALAVAEQNIeEHGLIHHVTPIRADLF-RELPpvQYDLIV 205
                     6799***************************984568899999889999***********.566636667765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.7e-06    0.0039       1      67 [.     137     206 ..     137     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.7e-06
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvs 67 
                      Ld+ +G+G +a a+a ++  a+v +vD+s+ +l++a+++++e gl  +v+ ++ad+ +  ++  ++Dl+v 
       EHT99882.1 137 LDMCTGSGCIAIACAYAFpdAEVDAVDISHDALAVAEQNIEEHGLihHVTPIRADLFR-ELPPVQYDLIVT 206
                      7888899999999996668*************************99999999999997.788888898876 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.8e-05     0.064       5      50 ..     136     181 ..     132     199 .. 0.89
   2 ?   -2.0   0.0       2.6   2.1e+03      10      28 ..     260     278 ..     258     285 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.8e-05
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTT CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealel 50 
                     +l++++G+G + +a A ++Pd ++ +++i+ + +a + ++ie+++l
      EHT99882.1 136 ILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGL 181
                     79***************************************99964 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.6
                     -TTSHHHHHHHHHSTTSEE CS
  Methyltransf_4  10 cGkGeflvalAkknPdknf 28 
                     c  G+++v++ ++ Pd+ f
      EHT99882.1 260 CEVGNSMVHMMEQYPDVPF 278
                     5568999999999999876 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.9e-05     0.048      64     133 ..     134     206 ..     125     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-05
                 -EEEEES-TTSHHHHHHHHHH.--EEEEEES-HHHHHHHHHHHHTS-SSS-EE.EEES-GGG---.--SEEEE CS
        CMAS  64 mtlLdiGcGWGslvrravery.dvkvvglTlSkeqaklakkrvdeldlerkve.vklldyedlde.kvdrvvs 133
                  ++Ld+ +G G +++  +  + d++v ++ +S++  ++a+++++e +l ++v+ ++   +++l+  ++d +v+
  EHT99882.1 134 RHILDMCTGSGCIAIACAYAFpDAEVDAVDISHDALAVAEQNIEEHGLIHHVTpIRADLFRELPPvQYDLIVT 206
                 689***********999988879************************9888764888889***9989999986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001     0.082      20      88 ..     130     206 ..     111     307 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...kakkaqkdqfdeqeaaepqg.........kfdlIvl 88 
                       +++  +Ld+ +G+G  +  +++ +   +v++vD+s  a + ae   + +  +++ ++        +         ++dlIv 
       EHT99882.1 130 PEKPRHILDMCTGSGCIAIACAYAFPdaEVDAVDISHDALAVAEqniEEHGLIHHVTPIR------AdlfrelppvQYDLIVT 206
                      588899*********77777777765579*******988887766553333333333222......02222223336666655 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.089      22     100 ..     129     207 ..     113     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      DUF938  22 lakttervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappap 100
                 ++++ +++L++ +G+G  A+  A a+p ++  + d  +   +  ++ ++e +l    +P++ d  +e+ pv+ + + ++
  EHT99882.1 129 IPEKPRHILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQNIEEHGLIHHVTPIRADLFRELPPVQYDLIVTN 207
                 4566668*********************************999999********************9999998876655 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00024      0.19       4      85 ..     142     216 ..     140     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00024
  Methyltransf_24   4 GvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavl 85 
                      G  sG  ++++++a+ +++    v + hd+  + a+++++e+gl ++v+ i+ad++ +l+ ++   +Dl++   + + ++ +
       EHT99882.1 142 G--SGCIAIACAYAFPDAEV-DAVDISHDA-LAVAEQNIEEHGLIHHVTPIRADLFRELPPVQ---YDLIVTNPPYVDAEDM 216
                      5..78888888888888884.445555555.5667778888*****************99888...8998876655555555 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.12      46     101 ..     132     186 ..     120     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvk 101
                      +++++l++  G+G + +a a + p+a+v   D+++ +l + ++nie   + l ++v+
       EHT99882.1 132 KPRHILDMCTGSGCIAIACAYAFPDAEVDAVDISHdALAVAEQNIEE--HGLIHHVT 186
                      6789****************************98779*********9..55555554 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00044      0.36      44     138 ..     130     213 ..     113     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00044
    N6_Mtase  44 pksgesvyDpacGsggllvqaekvlkeedgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNppfnqk 138
                 p++ + ++D++ Gsg + +  +  +        + ++  +++ + + ++a+ N+  hg   + v    +d + ++      + d +v+Npp+ ++
  EHT99882.1 130 PEKPRHILDMCTGSGCIAIACAYAFP-------DAEVDAVDISHDALAVAEQNIEEHGLIHH-VTPIRADLF-RELPP--VQYDLIVTNPPYVDA 213
                 4455569********99998888764.......44445568899999999999999998887.444445544.44444..79**********876 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0017       1.4      42      70 ..      65      94 ..      18      94 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0017
      PrmC_N 42 erelteeqler.feelierRaarePlqyIl 70
                + +lt+++ +r +e++i+r  +r+P++y++
  EHT99882.1 65 NARLTASERHRiVERVIRRVNERIPVAYLT 94
                45688888777356666777********98 PP

>> AviRa  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0009      0.73      53     100 ..     132     177 ..     119     195 .. 0.86
   2 ?   -1.0   0.0       1.2   9.7e+02     149     179 ..     185     213 ..     177     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0009
       AviRa  53 apltlyDpCCGgayLltvlgllhgkkikkvlasDvdeevlelakkNLs 100
                 +p ++ D C G++ ++ + ++   +  ++v a D+++++l++a++N++
  EHT99882.1 132 KPRHILDMCTGSGCIAIACAYAFPD--AEVDAVDISHDALAVAEQNIE 177
                 58899*********99888888777..6999***************85 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
       AviRa 149 ievfkaditekeeeaekevdivitDlPYGel 179
                 ++ ++ad++++ ++++   d+++t  PY + 
  EHT99882.1 185 VTPIRADLFRELPPVQ--YDLIVTNPPYVDA 213
                 5667899998877777..6*********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2199.94
//
Query:       EHT99883.1  [L=182]
Description: putative DNA endonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-17   63.5   0.0    2.8e-17   62.8   0.0    1.3  1  Smr       Smr domain


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   1.6e-21   2.8e-17       1      79 [.      97     171 ..      97     172 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.6e-21
                 EE-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTTHCHHHHHHHHHHHCSTTEEEEEE--CCCTGGGEEEEEE CS
         Smr   1 lDLhglrraealnvletfldaasakglrsvevihGkGahagvgvLrpavmgwLagkeaveafreaekkeGgkGavvVlL 79 
                 lDLhgl++ +a+++l   ++a+++++l +  v++G+G+     +L+++ + wLa++++v af++a+k+ Gg+ a++Vl+
  EHT99883.1  97 LDLHGLTQMQAKQELGALIAACRREHLFCASVMTGHGK----HILKQQTPLWLAQHPWVMAFHQAPKMFGGDAALLVLI 171
                 8*************************************....8*********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1362.70
//
Query:       EHT99884.1  [L=606]
Description: methyl-accepting chemotaxis protein II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-53  181.6  18.7    1.1e-53  181.6  18.7    3.9  4  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
    5.6e-12   45.8   1.0    5.6e-12   45.8   1.0    4.1  4  HAMP       HAMP domain
    2.9e-09   36.7  16.2    2.9e-09   36.7  16.2    3.3  3  HBM        Helical bimodular sensor domain
      1e-06   28.5   5.4      1e-06   28.5   5.4    5.6  6  4HB_MCP_1  Four helix bundle sensory module for signal transd
     0.0019   17.4   5.2      0.039   13.2   0.2    2.7  2  HAP1_N     HAP1 N-terminal conserved region
  ------ inclusion threshold ------
      0.018   15.1   0.2      0.072   13.1   0.2    2.0  1  STATa_Ig   STATa Immunoglobulin-like domain
      0.026   14.8   5.8       0.48   10.7   1.8    3.2  2  DUF4064    Protein of unknown function (DUF4064)
       0.28   11.5   2.8       0.47   10.8   0.1    2.6  2  DUF5383    Family of unknown function (DUF5383)
        2.1    8.2   5.9        1.5    8.7   0.0    3.7  4  PSD2       Protein of unknown function (DUF1585)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.2      0.11   2.2e+02     109     164 ..     115     171 ..     101     179 .. 0.60
   2 ?   -2.8   0.2       2.4   4.8e+03      60      60 ..     243     243 ..     199     285 .. 0.58
   3 !    5.9   3.6    0.0051        10      93     165 ..     342     411 ..     313     418 .. 0.54
   4 !  181.6  18.7   5.3e-57   1.1e-53       2     172 .]     416     572 ..     415     572 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.11
                 .HHHHHHHHHHHHHHHHHCCHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 109 leetrqrveegselveetgealkei..veavaevadlvqeiaaaseeqsasieevnqa 164
                 +   rq+ + ++++v++ ++al+++  ++++  +++l    +++  + sa+++e+n+ 
  EHT99884.1 115 IATYRQKRADTVQTVRNGAQALQNLsvADEMRAISQLAA-SNSSDPQTSAALQEINKH 171
                 555667777788888888888886511344444443322.233344667778888775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
                 H CS
   MCPsignal  60 A 60 
                 A
  EHT99884.1 243 A 243
                 2 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0051
                 HHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  93 aliieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqav 165
                 +++ e+  e  + ++ + + ++ v+++s ++++ +++l   ++++++ a+ + + aa+ e+++a++++ ++++
  EHT99884.1 342 HAVGEMSDELRRIISGIRSGVTSVSQASAEIASGNNDL---SARTESQAAALAQTAASMEQLTATVKQNADNI 411
                 34444444444444444444444444444444444444...33444444444445555555555555544444 PP

  == domain 4  score: 181.6 bits;  conditional E-value: 5.3e-57
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                  la+++ ++A++gg+ v +vv++m+ei++ss +is+i++Vi++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsaqaakeieali     
  EHT99884.1 416 RLAQQTFDTASRGGQLVTDVVSTMNEITTSSGKISEITSVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAQAAKEIEALI----- 509
                 689999****************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          ++++ r++ gs+lv++tg+++ eiv++v++v+dl++ei+ aseeq ++i +v  a+ e+++vt
  EHT99884.1 510 ---------HDSVARINAGSQLVSQTGNTMGEIVNSVSNVTDLLNEISHASEEQNRGIAQVGVAIVEMDNVT 572
                 .........99**********************************************************986 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.87   1.7e+03      15      41 ..     124     149 ..     123     150 .. 0.74
   2 ?   -3.9   0.2         9   1.8e+04      14      24 ..     235     245 ..     233     247 .. 0.81
   3 !   45.8   1.0   2.8e-15   5.6e-12       1      53 []     301     353 ..     301     353 .. 0.98
   4 ?    4.6   0.1     0.021        42      11      50 ..     363     410 ..     354     413 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.87
                 HHHHHHTTT.....BTSSTCCTTSSSHHHHHH CS
        HAMP  15 raarriaaG.....dldtrlpvsgrDEiGeLa 41 
                 ++++ +++G     +l++       DE++++ 
  EHT99884.1 124 DTVQTVRNGaqalqNLSVA------DEMRAIS 149
                 5677777777777799999......9999876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9
                 HHHHHHHTTTB CS
        HAMP  14 araarriaaGd 24 
                  + ++++aaGd
  EHT99884.1 235 NALMASVAAGD 245
                 56799999998 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 2.8e-15
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +++r+++rPL +L  +a+++a+G+l+t l  s+rDE+GeL +a+ +M+d+Lr+
  EHT99884.1 301 FITRQLTRPLAELLHVANQMARGNLSTVLKSSRRDELGELMHAVGEMSDELRR 353
                 799************************************************96 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.021
                 HHHHHHHHHHTTT..BTSST......CCTTSSSHHHHHHHHHHHHHHH CS
        HAMP  11 rrLaraarriaaG..dldtr......lpvsgrDEiGeLarafNaMldr 50 
                   +++a ++ia+G  dl++r          +   + +L +++ + +d+
  EHT99884.1 363 TSVSQASAEIASGnnDLSARtesqaaALAQTAASMEQLTATVKQNADN 410
                 5689********999999996555533335555555555555555555 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7  16.2   1.5e-12   2.9e-09       3     254 .]      38     280 ..      36     280 .. 0.92
   2 ?    3.3   2.8     0.024        47      57     150 ..     325     419 ..     316     424 .. 0.81
   3 ?   -0.3   2.5      0.29   5.8e+02      67     129 ..     510     572 ..     482     601 .. 0.57

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.5e-12
                 XXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         HBM   3 sLgslidRsdklseisqLndllkdLRiaRlqyelsngdataaavqkkldelkaqlqklkakfkspenvrlLqeqlalvqeyrksfnelraayesrnaaR 101
                 +L+ +  R +kl e+  +nd   +   aRlq+  + +++     ++ l+e+++ l++l     ++ ++ +++++  +++ yr++ +++ + +++  +a 
  EHT99884.1  38 NLNDISVRAEKLRELKSVNDRFSQAKDARLQFVKTHDEKFIDVNENLLKEVDQNLKNLGVFHWDDSQQAMITAMPSAIATYRQKRADTVQTVRNGAQAL 136
                 8999****************************9999988888889999*************************************************99 PP

                 HHHHHHHHHHHHHHHHHHHHHHCS-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHH-GG.GHHHHHHHHHH CS
         HBM 102 qeldsaaeraleaideleaevlqtpeadserlaqlqaiaelkrqvqlaryqvrgYtfsenedseqaavtaldaalaeldqlrqalasdpraalqqlesa 200
                 q+l  a e    ai +l a+       d    +   a++e+++++  +  +v+ +  +++e++ +a+++ l+++ + ++ ++ +l+ ++ aal++++  
  EHT99884.1 137 QNLSVADE--MRAISQLAASNSS----D---PQTSAALQEINKHLGGVAVRVKLFGLEHKEEDRNALSNFLSETVQLMALVKPRLNAADSAALEKVSAQ 226
                 99965443..3455555444333....3...344567888999******************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXX CS
         HBM 201 lskYRaaleqfkaavaaieqarkemteqgdeivkisdeLyqiqtekrdseaaqA 254
                 l++    ++++ a vaa  +a  ++++ g+ + ++s++L   q++  + +a+qA
  EHT99884.1 227 LETKQGDINALMASVAAGDAATVQLAAAGKILTDMSNALFTQQLDATNHDANQA 280
                 ***************************************************998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.024
                 HHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S-H.HHHHHHHHHHHHHHHHHHHHH CS
         HBM  57 lqklkakfkspenvrlLqeqlalvqeyrksfnelraayesrnaaRqeldsaaeraleaideleaevlqtpead.serlaqlqaiaelkrqvqlar 150
                 l ++ ++++ +e   l+ + ++  +e+r+  + +r+++ s  +a +e+ s  + +++++++  a ++qt+++  +  +++ q+++++    +la+
  EHT99884.1 325 LSTVLKSSRRDELGELMHAVGEMSDELRRIISGIRSGVTSVSQASAEIASGNNDLSARTESQAAALAQTAASMeQLTATVKQNADNIHHSSRLAQ 419
                 566777888888889999999*************************************9999999999888653445556666666666666555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S-H CS
         HBM  67 penvrlLqeqlalvqeyrksfnelraayesrnaaRqeldsaaeraleaideleaevlqtpead 129
                  ++v ++++  +lv++  + + e+ +++ +  ++ +e+  a+e+ +  i+++   +++  +  
  EHT99884.1 510 HDSVARINAGSQLVSQTGNTMGEIVNSVSNVTDLLNEISHASEEQNRGIAQVGVAIVEMDNVT 572
                 355666666666666666666666666666666666666666666666666666666533332 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   5.4     5e-10     1e-06       1     142 [.      10     139 ..      10     170 .. 0.88
   2 ?   -0.6   0.1      0.41   8.1e+02     112     153 ..     195     236 ..     184     265 .. 0.53
   3 ?    0.0   0.5      0.27   5.4e+02     132     177 ..     372     415 ..     362     451 .. 0.71
   4 ?   -2.0   0.0       1.1   2.2e+03     126     162 ..     469     505 ..     467     510 .. 0.75
   5 ?    1.4   0.1     0.099     2e+02     141     179 ..     519     557 ..     514     559 .. 0.82
   6 ?   -3.0   0.7       2.2   4.5e+03     152     179 ..     568     595 ..     564     597 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 5e-10
   4HB_MCP_1   1 nlkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieeleaeidkllekye 99 
                 nlk++kKL+l+f+l++ll ++v++ G+ +l++i+  +e        ++++l+++++ + + + + l+ + t d++  d  ++    l +e+d++l++  
  EHT99884.1  10 NLKVGKKLMLGFGLILLLSLAVAICGIKNLNDISVRAE--------KLRELKSVNDRFSQAKDARLQFVKTHDEKFIDVNEN----LLKEVDQNLKNLG 96 
                 8*******************************986555........6899*********************99888887777....8999********* PP

   4HB_MCP_1 100 ktilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyq 142
                     +++++ ++++  +++++Yr+ r+++++++++g +  +  
  EHT99884.1  97 VFHWDDSQQAMITAMPSAIATYRQKRADTVQTVRNGAQALQNL 139
                 ************************************9764444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.41
   4HB_MCP_1 112 eefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrpare 153
                 ++f ++  + +++ k  l++a +   ++ ++++et+   + +
  EHT99884.1 195 SNFLSETVQLMALVKPRLNAADSAALEKVSAQLETKQGDINA 236
                 444444444444444444444444444444444444332222 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.27
   4HB_MCP_1 132 akegkkd.eAyqlyetegrparekliealeelvdlnlkvAeeaykdn 177
                 +++g++d    + +e+++  a +++ +++e+l  + +++A+++++++
  EHT99884.1 372 IASGNNDlS--ARTESQA-AALAQTAASMEQLTATVKQNADNIHHSS 415
                 556665522..2223333.5666777777777777777777766655 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.1
   4HB_MCP_1 126 kkvlelakegkkdeAyqlyetegrparekliealeel 162
                 + ++e+a++g++ + ++++++e+r+ ++   +a++e+
  EHT99884.1 469 NAAVEAARAGEQGRGFAVVASEVRNLAQRSAQAAKEI 505
                 5678889999999999999999987777766666654 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.099
   4HB_MCP_1 141 yqlyetegrparekliealeelvdlnlkvAeeaykdnka 179
                  +++ +++ +++ +++++++++ dl ++ ++ + ++n+ 
  EHT99884.1 519 GSQLVSQTGNTMGEIVNSVSNVTDLLNEISHASEEQNRG 557
                 444555555************************999986 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 2.2
   4HB_MCP_1 152 rekliealeelvdlnlkvAeeaykdnka 179
                 ++++++   +lv++ +  A  +++++++
  EHT99884.1 568 MDNVTQQNAALVEQSSAAASALHDQAQT 595
                 7888888889999999999999988876 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   1.9e-05     0.039     105     243 ..     325     469 ..     317     480 .. 0.68
   2 !    5.1   1.0    0.0056        11     171     271 ..     490     590 ..     479     601 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
      HAP1_N 105 LeeqLesa.reeiaqlrhel.slkddLLqlysdseeeseeeseeseelreeesl......eslqklvqldlLqeklreLeeeNekLreeasqLktetdt 195
                 L + L+s+ r+e  +l h + ++ d+L +++s      ++ s+ s e+ + ++       +++  l q+ +  e+l    + N    +  s+L+++t +
  EHT99884.1 325 LSTVLKSSrRDELGELMHAVgEMSDELRRIISGIRSGVTSVSQASAEIASGNNDlsarteSQAAALAQTAASMEQLTATVKQNADNIHHSSRLAQQTFD 423
                 5556665427999999**996799*******99966666666666664444444133333334444455555555555556666666778999****** PP

      HAP1_N 196 lEekEqqLvldcveqlseanqqiaelseelarkleelerqqeeissLl 243
                 +  +  qLv+d+v+ ++e  ++  ++se  +    +   +q +i  L 
  EHT99884.1 424 TASRGGQLVTDVVSTMNEITTSSGKISEITSV--INSIAFQTNILALN 469
                 **************999999988888874332..23344555555555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0056
      HAP1_N 171 klreLeeeNekLreeasqLktetdtlEekEqqLvldcveqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqklkelgveneelkqhLaa 269
                  +r+L +   +  +e + L +++ +  +   qLv++  + + e  ++++++++ l++ +   e+q + i+++   iv++ +  ++ ++  e+ ++  +a
  EHT99884.1 490 EVRNLAQRSAQAAKEIEALIHDSVARINAGSQLVSQTGNTMGEIVNSVSNVTDLLNEISHASEEQNRGIAQVGVAIVEMDNVTQQNAALVEQSSAAASA 588
                 6777888888888888889899999999999***********************************************999999888777666655555 PP

      HAP1_N 270 sk 271
                   
  EHT99884.1 589 LH 590
                 55 PP

>> STATa_Ig  STATa Immunoglobulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   3.6e-05     0.072      28      90 ..     353     417 ..     345     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
    STATa_Ig  28 qlltGakvelqavskvkAelvvesktls.Keksskktlekdtevldesklvakfk.lkflvgtRk 90 
                  +++G ++ +++vs+ +Ae+   +++ls +++s++ +l + + ++++ + ++k +   + +++R 
  EHT99884.1 353 RIISGIRSGVTSVSQASAEIASGNNDLSaRTESQAAALAQTAASMEQLTATVKQNaDNIHHSSRL 417
                 589*******************99666516666699***********999999885788888886 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.029        59      54      79 ..      11      36 ..       5      42 .. 0.87
   2 ?   10.7   1.8   0.00024      0.48      43      83 ..     263     303 ..     234     307 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
     DUF4064 54 leflstllivlgvialiaivlgivga 79
                l +  +l++ +g+i+l+++++ i+g+
  EHT99884.1 11 LKVGKKLMLGFGLILLLSLAVAICGI 36
                56778999****************97 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00024
     DUF4064  43 qalsgedasavleflstllivlgvialiaivlgivgalllk 83 
                 +al ++  +a+ +  ++ +++++vi + aiv+gi+ al++ 
  EHT99884.1 263 NALFTQQLDATNHDANQAVWLMTVIIIAAIVAGILIALFIT 303
                 666777889999*************************9987 PP

>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3       1.3   2.6e+03      34      57 ..      64      87 ..      40      97 .. 0.65
   2 ?   10.8   0.1   0.00024      0.47      50     115 ..     234     301 ..     223     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
     DUF5383 34 qkdLtFtkkekeeaeelkesLfas 57
                   L+F k ++e+  +++e+L ++
  EHT99884.1 64 DARLQFVKTHDEKFIDVNENLLKE 87
                346899999999999999988765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00024
     DUF5383  50 lkesLfassek.esntiaakakelgLfseekesvkqsateqes..eeksnlLpillillivllivvlli 115
                 + ++L as ++ ++ t++  a+   L+  ++++ +q+ +++++  ++ + l++++ i++iv++i++ l+
  EHT99884.1 234 I-NALMASVAAgDAATVQLAAAGKILTDMSNALFTQQLDATNHdaNQAVWLMTVIIIAAIVAGILIALF 301
                 3.458888888799999999999999999***9999999988874555555667888899999998774 PP

>> PSD2  Protein of unknown function (DUF1585)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00073       1.5      39      70 ..     212     243 ..     210     246 .. 0.92
   2 ?   -3.2   0.1       3.7   7.4e+03      45      62 ..     395     412 ..     392     413 .. 0.82
   3 ?   -1.2   0.1      0.92   1.8e+03      46      67 ..     490     511 ..     488     514 .. 0.86
   4 ?   -1.1   0.0      0.81   1.6e+03      47      70 ..     544     567 ..     541     570 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00073
        PSD2  39 leasDrcaveeivaalrasgyrlrdlieaivt 70 
                 l+a+D++a+e+++a+l+++++ +++l+++++ 
  EHT99884.1 212 LNAADSAALEKVSAQLETKQGDINALMASVAA 243
                 899************************99976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.7
        PSD2  45 caveeivaalrasgyrlr 62 
                 +++e+++a+++++ ++++
  EHT99884.1 395 ASMEQLTATVKQNADNIH 412
                 578999999999988875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.92
        PSD2  46 aveeivaalrasgyrlrdliea 67 
                 +v+ +++++++    + +li++
  EHT99884.1 490 EVRNLAQRSAQAAKEIEALIHD 511
                 7899999999999999999986 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.81
        PSD2  47 veeivaalrasgyrlrdlieaivt 70 
                 ++ei++a+++++ +++++ +aiv+
  EHT99884.1 544 LNEISHASEEQNRGIAQVGVAIVE 567
                 7899**************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1879  (0.104802); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 4588.41
//
Query:       EHT99885.1  [L=160]
Description: phosphohistidine phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-08   32.4   0.0    3.8e-07   30.0   0.0    1.8  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.1e-11   3.8e-07       1      70 [.       3      70 ..       3      80 .. 0.92
   2 ?    0.3   0.0     0.026   4.7e+02     136     166 ..      97     125 ..      89     149 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 2.1e-11
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT-- CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealglp 70
                ++++RHG  +  a+      +  pLt  G  + +++a++l++  ++i+++++Sp+ Ra+qT + + eal lp
  EHT99885.1  3 VFIMRHGDAALDAA----SDSVRPLTLCGCDESRQMANWLKDqaVDIERVLVSPYLRAQQTLATVREALPLP 70
                579********999....89999*******************88888899*****************99865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.026
                 HTTTSEEEEEE-HHHHHHHHHHHHT--GGGG CS
  His_Phos_1 136 rhegetvlvVsHggvirallarllglpleel 166
                 +++ + vlv+sH  ++ +l+++l   p e++
  EHT99885.1  97 NEGVKSVLVISHLPLVGYLVSELC--PQETP 125
                 344456******999999998876..33444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1417.97
//
Query:       EHT99886.1  [L=706]
Description: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-57  194.9   0.0      2e-57  194.0   0.0    1.5  1  3HCDH_N   3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    4.3e-38  131.1   0.0    7.5e-38  130.3   0.0    1.3  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.3e-33  115.4   0.0    1.1e-25   90.0   0.0    2.8  2  3HCDH     3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    1.5e-25   90.4   0.0    1.5e-25   90.4   0.0    1.6  2  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0   4.4e-61     2e-57       2     179 ..     310     488 ..     309     489 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 4.4e-61
                 EEEE--SCCHHHHHHHHHHT.T-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasa.gleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfae 99 
                 v+v+G G+mG gia v a + gl+V++ dis + +++al++  + l+k v++++l+ +++++++aris  td++ +++ d+viEav+E+l+lK+++ ae
  EHT99886.1 310 VGVLGGGLMGGGIACVSAIHaGLPVRIKDISLNGINHALQTSWALLSKKVQRRQLTPAQRQQQMARISGGTDYQGFTQRDIVIEAVFEDLALKQQMVAE 408
                 9***************99776****************************************************************************** PP

                 HHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 100 lekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkd 179
                 +e++++p++i+asnTSsl+i+++a++ +rpe++iglH+f+P+++m+LvEv+++++Ts+et+a +v+la+k gktp+vv d
  EHT99886.1 409 VETHCQPQTIFASNTSSLPIADIAAKAARPENIIGLHYFSPVEKMPLVEVIPHAATSPETLASTVTLARKQGKTPIVVAD 488
                 ******************************************************************************87 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.0   1.7e-41   7.5e-38       5     189 ..      14     203 ..      11     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 1.7e-41
                 TEEEEEE--C.GCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHC.HHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEE CS
       ECH_1   5 gvaviklnrP.eavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeek.akqallkeevlelwtklytvpkpviaavnGaai 100
                  v vi+++ P e++N+l+ae+   ++  + ++++ +++ + vL +  +  F aGad+  + + +   +++ l  + +e + ++  +p pv+aa+ Ga++
  EHT99886.1  14 HVGVITIDVPnEKMNTLKAEFAVQIASLISEARQHPQLLGLVLISgKPDNFVAGADISMIDRCQRaDEAEALARQGQEVMAAIAALPFPVVAAIHGACL 112
                 58889999885689***********************999998877***********9888777745556688999*********************** PP

                 THHHHHHHHSSEEEE..ETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHH CS
       ECH_1 101 gGGlelalacDivia..adnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaek 189
                 gGGlelalac  +i+  +d+ + gl+e++lGl+pg+ggtq+l+  +G +kA  ++l+gk+++a+ a+k G+vd +vp++ ll++a+e ++k
  EHT99886.1 113 GGGLELALACHSRICtlDDKTRLGLPEVQLGLLPGSGGTQRLPHLIGVQKALPLILTGKSLRAKQAKKLGIVDDAVPQAILLDTAIESVKK 203
                 **********9888644899******************************************************************98876 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   2.6e-29   1.1e-25       1      97 []     491     584 ..     491     584 .. 0.97
   2 !   22.4   0.0   3.1e-08   0.00014       3      82 ..     615     697 ..     614     702 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2.6e-29
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyky 97 
                 GF+vnR+l p++nea+r++ eg   +e+iD+a+   +G+p+Gp +lld+vg+dv+ ki+  l++++ger +a++p l  +++ gr grk+ kgfy y
  EHT99886.1 491 GFYVNRILTPYINEAMRCLLEG-EPVEHIDRALVM-FGFPVGPVQLLDEVGIDVGSKISPGLQQAYGER-FAAPPALAAVINDGRKGRKNHKGFYLY 584
                 9*********************.************.*********************************.5559*********************77 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 3.1e-08
                 THHHHHHHHHHHHHHHHHTTSS.-HHHHHHHHHHHHHHS...SCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHH CS
       3HCDH   3 vvnRvlapllneavrlveegva.spediDaamrlglGlp...mGpfelldlvgldvakkilevlaeelgerayapsplleklve 82 
                 ++ R+++ +lneavr+++e+v+ sp+d D  +  g+G+p    Gpf  +d +g +   + l  l++++g+r +ap++ l++ ++
  EHT99886.1 615 IAERCVMMMLNEAVRCLDEQVIrSPRDGDIGAVFGIGFPpflGGPFHYIDRLGAGEIVNRLTRLEQQYGDR-FAPCERLQRAAQ 697
                 899*****************8757***************88779*********9999888889*******9.888999888776 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   3.4e-29   1.5e-25       1     177 [.      15     193 ..      15     254 .. 0.87
   2 ?   -5.4   1.9         4   1.8e+04      91     104 ..     310     323 ..     306     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 3.4e-29
                 .EEEEE--G.GGTT-B-HHHHHHHHHHHHHHCC-TT-.SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BE CS
       ECH_2   1 vgvitLnrp.kalNaLslemvralkealkewekddev.klvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGi 97 
                 vgvit++ p +++N L+ e + ++++ ++e +++++   lv+++g ++  f AG D+ ++ + ++++++e  ++ r+  ++ ++ia +p pvva ++G 
  EHT99886.1  15 VGVITIDVPnEKMNTLKAEFAVQIASLISEARQHPQLlGLVLISG-KPDNFVAGADISMIDRCQRADEAE--ALARQGQEVMAAIAALPFPVVAAIHGA 110
                 589999998358*******************99998725666677.6699***********999997766..6************************** PP

                 EETHHHHHHTTSSEEEE-..TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGH CS
       ECH_2  98 vmGgGvGlsvhgsfrvvt..ertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpsekl 177
                 ++GgG+ l++ ++ r+ t  ++t++  PE+++Gl P  Gg+  L++l g + +l l lTG++l++++a ++g+ +  vp++ l
  EHT99886.1 111 CLGGGLELALACHSRICTldDKTRLGLPEVQLGLLPGSGGTQRLPHLIGvQKALPLILTGKSLRAKQAKKLGIVDDAVPQAIL 193
                 ******9999999999987789*************************88799***************************9866 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 4
                 EEEE-BEEETHHHH CS
       ECH_2  91 valmdGivmGgGvG 104
                 v ++ G  mGgG++
  EHT99886.1 310 VGVLGGGLMGGGIA 323
                 66788999****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5058.33
//
Query:       EHT99887.1  [L=292]
Description: acetyl-CoA acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-36  122.8   0.9    9.7e-35  118.9   0.9    2.2  1  Thiolase_C  Thiolase, C-terminal domain
    1.5e-33  116.3   0.1    2.1e-33  115.8   0.1    1.2  1  Thiolase_N  Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.9   1.1e-38   9.7e-35       2     122 ..     152     290 ..     151     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 1.1e-38
                 --SEEEEEEEEEE--G.GGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G.................GGBSTT--HHHH-B-T CS
  Thiolase_C   2 kplakirsyaevgvdp.eilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl.................ekvNvnGGaialGHPl 82 
                 +pl+++rsya ++ d  +++ lgPaya++ +l++ag+t++d+ l++++EAFaaq+L+++k +  +                   ++Nv GG+ia GHP+
  EHT99887.1 152 QPLGYLRSYAFTAIDVwQDMLLGPAYASPLALDRAGITLADLTLIDMHEAFAAQTLSNIKLFRDERfarevlnrshalgeiddARFNVLGGSIAYGHPF 250
                 799************99*******************************************998777999*************99*************** PP

                 TTHHHHHHHHHHHHHHHCTTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C  83 GasGaRivvtllselkkeggklgvaalCigggqgvalvie 122
                  a+GaR++++ l+el+++gg lg++++C++gg g+a+v+e
  EHT99887.1 251 AATGARMITQTLNELRRRGGGLGLVTACAAGGLGAAMVLE 290
                 **************************************98 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.1   2.4e-37   2.1e-33     144     259 ..      27     143 ..       2     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 2.4e-37
                 H..HTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTT.SS- CS
  Thiolase_N 144 d..gladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkke.Gtv 239
                    ++a+ +++  mG tae++ak+++isReeqd+ A++shq+aa+a+++g +++e++   v+  k    +d+d+ +r +++a   a+l+paF+ + Gtv
  EHT99887.1  27 VppAVAEYSTGLRMGDTAEQMAKTHGISREEQDALALRSHQRAAQAWQSGVLNQEVMAAFVPPFK--APIDQDNNVRMDAKAADYARLRPAFDRQhGTV 123
                 44499***************************************************999999988..67****************************** PP

                 BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 240 tAgnasqisDGaaavllmse 259
                 tA+n+ +++DGaaav+lm+e
  EHT99887.1 124 TAANSTPLTDGAAAVILMRE 143
                 ******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2305.61
//
Query:       EHT99888.1  [L=146]
Description: 3-ketoacyl-CoA thiolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-18   67.2   0.6    1.7e-18   67.0   0.6    1.0  1  Thiolase_N     Thiolase, N-terminal domain
     0.0064   16.1   0.4     0.0092   15.6   0.4    1.2  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.6   1.9e-22   1.7e-18       1     110 [.      15     124 ..      15     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.9e-22
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 ++i ++ rtp+ +  + ++ ++a+eL++ ++++++++ +++   ++++++G+v+q  e  niar+++l +g++ ++ a  v ++c+ +++ava++++s+
  EHT99888.1  15 IAITNGLRTPFLRQATGFHGIPAVELGRMVVSEMVARSELPVGMIEQLVFGQVVQMPEAPNIAREIVLSSGLSVSTDAYSVSRACATSFQAVANVTESL 113
                 68999********************************************************************************************** PP

                 HTTSHSEEEEE CS
  Thiolase_N 100 aageadvvvag 110
                  ag+++v +ag
  EHT99888.1 114 LAGTISVGIAG 124
                 *********98 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4     1e-06    0.0092     165     201 ..      89     125 ..      61     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-06
                    -SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEE CS
  ketoacyl-synt 165 rGpsvtvdtACsSslvavhaavqslrsgeadvalaGG 201
                       +++v+ AC++s+ av+ + +sl +g ++v +aG+
     EHT99888.1  89 STDAYSVSRACATSFQAVANVTESLLAGTISVGIAGA 125
                    556799999**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1101.42
//
Query:       EHT99889.1  [L=98]
Description: uncharacterized DUF406 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-36  123.7   0.6    3.5e-36  123.6   0.6    1.0  1  DUF406    Protein of unknown function (DUF406)


Domain annotation for each model (and alignments):
>> DUF406  Protein of unknown function (DUF406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.6     2e-40   3.5e-36       1      92 []       7      98 .]       7      98 .] 0.99

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 2e-40
                .--SS-SSS-----SS-SS--STTEEEEEEE-SSHHHHHHHHHHHHHHHHHH.STT-.EEEE----TT-SEEEEEEE-SSHHHHHHHHHHHH CS
      DUF406  1 kekaeeeaagcavdvgtiidnsdcvaeveivaaseaeaeaalakltekAkavesepveisseieeaedgveLkarfkFscqAEklIFeLklR 92
                k++a+e+aa+c+vdvgt++dn+dc+a++++ + ++aea+++la+l e+A++ves+p+ i+ +++e+ +gv+L++ f+FscqAE+lIF+L+lR
  EHT99889.1  7 KCRATETAACCCVDVGTVMDNTDCTASWSAWFGQRAEADSKLAELSERARQVESDPCVIDARFTEETGGVRLDVAFTFSCQAETLIFQLGLR 98
                6999***************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 865.61
//
Query:       EHT99890.1  [L=424]
Description: long-chain fatty acid outer membrane transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.6e-139  463.4  13.8   6.5e-139  463.2  13.8    1.0  1  Toluene_X    Outer membrane protein transport protein (OMPP1/
    0.00039   20.6  29.9      0.019   15.1  15.2    2.8  2  OMP_b-brl    Outer membrane protein beta-barrel domain
      0.003   17.5   4.8        2.5    8.0   0.0    4.2  4  DUF2490      Protein of unknown function (DUF2490)
  ------ inclusion threshold ------
       0.53   10.4  17.1        1.7    8.8   1.7    5.2  5  YadA_anchor  YadA-like membrane anchor domain


Domain annotation for each model (and alignments):
>> Toluene_X  Outer membrane protein transport protein (OMPP1/FadL/TodX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.2  13.8  1.5e-142  6.5e-139       2     434 .]      17     424 .]      16     424 .] 0.97

  Alignments for each domain:
  == domain 1  score: 463.2 bits;  conditional E-value: 1.5e-142
                 XXXXXXXXXXTTB--SS-HHHHHTTTTTTTTCTTSCCHHHCTGGGGGG-SS-EEEEEEEEEEEEEEEEEEECTTTC......--BST-SEEEEEEEEEE CS
   Toluene_X   2 vlvagqasaagfqlneqsasglgrAyaGeaaaaddasavvrNPAalalldeaelslglsyvrakvkvkgtagegqladtllegnggdaavtalvPnlyl 100
                 +l+++++ aagfqlne s  glgrAy+Ge+a+ d a++++rNPA++al+d++e+slg+ y++++v+++g++++g+        +++++a++++vP+l++
  EHT99890.1  17 ALISSNVYAAGFQLNEFSSIGLGRAYSGEGAMGDTAASASRNPATMALMDRPEFSLGAVYIDPQVDISGQSPTGRS------LDAKNIAPNQWVPDLHY 109
                 7899************************************************************************......89*************** PP

                 EEESSSSEEEEEEEEECEEEEEE--TTSTTCCCTSEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEEEEETCHHHHHCSCCCHCCHHTTTTTEE CS
   Toluene_X 101 vvpindkfafGlsvvapyglateydnsfaarslggetklqtlnlnlslaYrVndelsvGlgvdavhakgklsrllgllqqakeiggvaglnigassadn 199
                 v pind++ +G+s++++yglate++n ++a+ +gg+t+l+t+nlnls aYr+n+++s+G+g+dav+ak+k++r++g +++a           g++  ++
  EHT99890.1 110 VQPINDQWWVGASATSNYGLATEFNNGYTAGGFGGKTDLTTVNLNLSTAYRLNEHFSFGVGFDAVYAKAKIERYAGESFSA----------QGIPADTQ 198
                 ****************************************************************************66444..........478899** PP

                 EEEEEEEEEEEEEEEEEEEECCTTEEEEEEEE--EEEEEEEEEEECC-CCCCCCCCC.CHHHSTT-EEEEEEEEEE-EEEEEEEEEEECTTEEEEEEEE CS
   Toluene_X 200 lsklkgddlsvGfnlGvlyeltddtrlGlaYrskvkvklkgkyevsavsgaaglvta.vggaalglkakgkltltlPasaelsvvhklndqwalhaslk 297
                 + +lkg+++++G+n+Gvlye++d++r+G++Yrs+vkv+++g+y+++  ++++ ++   +  a+ g +++g+ltl+lP+++e+s+ hk+  qwa+h+sl+
  EHT99890.1 199 ITRLKGNEWGYGWNAGVLYEVDDNNRFGFTYRSEVKVDFDGDYKSNLPAAFNLANNPqIPFATNGNTIPGSLTLNLPEMWEVSGWHKVAPQWAVHYSLA 297
                 *********************************************99888776655569**************************************** PP

                 EEEGGG-SEEEEEECCCCTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESSSSEEEEEEEEEEE CS
   Toluene_X 298 wtgWSsfkeltaviakskgntslskpenYrDtwsfalGteYrvndkltLRaGvaYdqsaipdekrdirvPdgdrtllslGltYaitkdltiDvgfsylv 396
                 +t+WS+f+el+a+ ++++  t++ k+e++ D++++alGt+Y++++++t+R G+a+d+s++p+ kr+i++Pd+dr +ls+G++Ya+++d+++Dvg+sy++
  EHT99890.1 298 YTSWSQFQELKATGSNGQ--TLFYKDEGFHDAYRIALGTTYQYDKNWTFRSGIAFDDSPVPADKRSISIPDQDRLWLSAGASYAFNDDASVDVGVSYMH 394
                 **********88888776..******************************************************************************* PP

                 EEEEEEEEB..GGGTSTCEEEEEEEEEEEEEEEEEEES CS
   Toluene_X 397 vkkakiaeqnagsdlasaldgdveakavllalqanyrF 434
                 ++k++i+e        +++++++++ka+l+++++ny+F
  EHT99890.1 395 GQKVTIQE--------GNYTFNSSGKAWLYGASFNYKF 424
                 ********........789******************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  15.2   4.2e-06     0.019      54     166 ..     113     242 ..      11     251 .. 0.78
   2 !   10.7   6.8   9.4e-05      0.42      18     140 ..     300     422 ..     286     424 .] 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.2e-06
   OMP_b-brl  54 fndnvgvegglsy...sgdkdysgs..gktdikinllsvpvnagyafnlsdsvlpyggaGlgytkvevd.vsgng............asdsdtdfglgl 134
                 +nd + v+++++    + ++ ++g   g+   k +l++v +n+  a++l++ ++  +g+   y+k++++ + g                 +++++g+g+
  EHT99890.1 113 INDQWWVGASATSnygLATEFNNGYtaGGFGGKTDLTTVNLNLSTAYRLNEHFSFGVGFDAVYAKAKIErYAGESfsaqgipadtqiTRLKGNEWGYGW 211
                 6886666666664224444444444676777888999************9999999999999998999866666699999******************* PP

   OMP_b-brl 135 gaGveyaladnwslkaeYry.tdlksdadndlk 166
                  aGv y++ dn  +++ Yr  +++  d d+d+k
  EHT99890.1 212 NAGVLYEVDDNNRFGFTYRSeVKV--DFDGDYK 242
                 ******************986555..3345544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.4e-05
   OMP_b-brl  18 sfggfy...vggglglskvkvdgvgsdsgfgfgvgagyefndnvgvegglsysgdkdysgsgktdik.inllsvpvnagyafnlsdsvlpyggaGlgyt 112
                 s+++f+   ++g+ g++ ++ ++ g+ + + + +g +y+ ++n+ +  g+++ ++   +   k +i+ +++  + + ag ++ ++d  ++ +g+ + ++
  EHT99890.1 300 SWSQFQelkATGSNGQTLFY-KDEGFHDAYRIALGTTYQYDKNWTFRSGIAFDDSPVPAD--KRSISiPDQDRLWLSAGASYAFNDDASVDVGVSYMHG 395
                 34444332266777777666.445666789999******************977765444..55777566667999999999999999*********98 PP

   OMP_b-brl 113 kvevdvsgngasdsdtdfglglgaGvey 140
                  ++v+++  + +++++  ++ +ga ++y
  EHT99890.1 396 -QKVTIQEGNYTFNSSGKAWLYGASFNY 422
                 .999999994445555555555555555 PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3     6e+03      43      60 ..      26      45 ..      24      59 .. 0.73
   2 ?    3.8   0.2     0.011        49      33      61 ..     147     175 ..     118     244 .. 0.77
   3 ?    3.8   0.0     0.011        50     151     176 ..     326     351 ..     317     362 .. 0.69
   4 !    8.0   0.0   0.00056       2.5      33      60 ..     366     396 ..     350     416 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
     DUF2490 43 lgyklnkklsvslgyay..e 60
                 g++ln+  s++lg ay  e
  EHT99890.1 26 AGFQLNEFSSIGLGRAYsgE 45
                57899999999999999540 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.011
     DUF2490  33 efnqillrpglgyklnkklsvslgyayee 61 
                 +++ + l  +  y+ln+++s+++g+ ++ 
  EHT99890.1 147 DLTTVNLNLSTAYRLNEHFSFGVGFDAVY 175
                 56666777888899999999999887732 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.011
     DUF2490 151 dqnRlyaglgyklnkkltlelgYmnq 176
                 d  R+ +g++y++ k++t+  g   +
  EHT99890.1 326 DAYRIALGTTYQYDKNWTFRSGIAFD 351
                 55688888888888888887776555 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00056
     DUF2490  33 efnqillrpglgyklnkklsvslgyay...e 60 
                 + ++++l++g +y++n+++sv +g+ y   +
  EHT99890.1 366 DQDRLWLSAGASYAFNDDASVDVGVSYmhgQ 396
                 4556666666666666666666666664330 PP

>> YadA_anchor  YadA-like membrane anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.9       2.6   1.2e+04      22      32 ..      10      20 ..       8      27 .. 0.64
   2 ?    2.1   0.7     0.047   2.1e+02      13      56 ..     129     171 ..     119     174 .. 0.68
   3 ?   -2.0   0.0       0.9     4e+03      49      58 ..     208     217 ..     196     218 .. 0.76
   4 ?    6.7   0.0    0.0017       7.5      18      46 ..     324     352 ..     323     358 .. 0.86
   5 ?    8.8   1.7   0.00038       1.7      26      60 .]     374     407 ..     372     424 .] 0.70

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.6
  YadA_anchor 22 sAvAvGasars 32
                 sAvA  ++ +s
   EHT99890.1 10 SAVAAAVALIS 20
                 56666665555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.047
  YadA_anchor  13 aGvGgYkgqsAvAvGasarsngnlvvklgvavssggsvgggvGv 56 
                  +++ + +g++A ++G +      + ++l+ a+  + ++++gvG+
   EHT99890.1 129 LATEFNNGYTAGGFGGKTDL-TTVNLNLSTAYRLNEHFSFGVGF 171
                  55555556666666666555.67788888888889999999985 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.9
  YadA_anchor  49 svgggvGvgy 58 
                  ++g+++Gv y
   EHT99890.1 208 GYGWNAGVLY 217
                  6799999988 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0017
  YadA_anchor  18 YkgqsAvAvGasarsngnlvvklgvavss 46 
                  +++++ +A+G ++  + n++++ g+a+++
   EHT99890.1 324 FHDAYRIALGTTYQYDKNWTFRSGIAFDD 352
                  6777779*******************755 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00038
  YadA_anchor  26 vGasarsngnlvvklgvavssggsvgggvGvgyqw 60 
                   Gas+ +n+   v +gv++  g++v++  G +y++
   EHT99890.1 374 AGASYAFNDDASVDVGVSYMHGQKVTIQEG-NYTF 407
                  699****************66666665544.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 3750.12
//
Query:       EHT99891.1  [L=254]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-64  216.2   0.1    3.7e-64  216.0   0.1    1.0  1  MlaA      MlaA lipoprotein


Domain annotation for each model (and alignments):
>> MlaA  MlaA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   0.1   2.1e-68   3.7e-64       2     193 ..      32     225 ..      31     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 216.0 bits;  conditional E-value: 2.1e-68
        MlaA   2 kDplegfNRavfkfN.dkldkyvlkPvakgYrkvvPepvrtgvsnffsNlsepvsvvnnlLqgkfkkavkelgRfliNttlGlgGlfDvaskl..glek 97 
                 +Dp+egfNR++f+fN ++ld yv++Pva ++r++vP p+r+g+snf+ Nlsep+s+vn +L g++++a+ +++Rf++Nt+lGlgG++Dva k+  +l +
  EHT99891.1  32 SDPFEGFNRTMFNFNyNVLDPYVVRPVAVAWRDYVPVPARAGLSNFLGNLSEPASMVNAILVGEPRNAGIHFTRFFLNTVLGLGGFIDVAGKAnpELAR 130
                 7**************999************************************************************************775356666 PP

        MlaA  98 kk.edfgqTLgvwgvgeGpYlvlPllGpstlRdavglvvdilldpvlsaeeaevslaltaleavdkraklldaeklleeasldpYafvRdaylqrre 193
                 +  + fg+TLg++gvg GpY+ lP +G+ t+R+  g +vd+ l+pvl + ++ +s++++ale+v++ra+lld++++l +++ dpYaf+R+ay++r +
  EHT99891.1 131 QGpQRFGTTLGHYGVGYGPYVQLPGYGSFTVRQDGGDYVDT-LYPVLGWLTWPMSVGKWALEGVETRAQLLDSDAIL-KQQRDPYAFMRNAYFERYD 225
                 544**************************************.5677899****************************.99*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2214.73
//
Query:       EHT99892.1  [L=403]
Description: cytochrome c heme lyase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   31.8  10.5     0.0044   17.5   0.7    2.6  2  TPR_19    Tetratricopeptide repeat
    4.7e-07   29.4   3.4      0.011   15.8   1.5    3.0  3  TPR_2     Tetratricopeptide repeat
    2.1e-05   25.0  11.6       0.02   15.7   0.9    4.3  4  TPR_14    Tetratricopeptide repeat
    0.00086   19.3   0.2        0.1   12.9   0.0    2.5  2  TPR_8     Tetratricopeptide repeat
    0.00089   19.0   0.5        1.5    8.8   0.4    2.6  2  TPR_1     Tetratricopeptide repeat
     0.0061   17.2   9.6      0.047   14.3   6.2    2.7  3  TPR_16    Tetratricopeptide repeat
     0.0062   17.1   2.8       0.67   10.7   0.6    3.4  3  TPR_6     Tetratricopeptide repeat
     0.0079   16.5   4.0       0.34   11.4   0.1    3.2  3  TPR_17    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.4   1.3      0.039   14.2   1.3    1.7  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      0.018   15.2   7.6      0.056   13.6   0.1    2.8  3  TPR_9     Tetratricopeptide repeat
       0.13   13.0   3.5         12    6.8   2.6    3.1  2  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.7   2.7e-06    0.0044       6      43 ..     179     216 ..     177     220 .. 0.93
   2 !   16.9   4.9   4.2e-06    0.0069       9      60 ..     219     271 ..     215     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.7e-06
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqlde 43 
                 + + A +++e alq +p+n+ ++ ++Ae+l  +g+++e
  EHT99892.1 179 NATTARQAFEHALQLAPNNQVLKQDYAEVLARSGDPQE 216
                 5789******************************9987 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4.2e-06
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ar 60 
                 +A   l+ + ++dp+na+ + lLA a +++ ++++A+a+ ++l+++ p d +r
  EHT99892.1 219 QAELVLQDLRKQDPHNARTLSLLAYAAFEQQHYAQAIAAWQTLLNALPADdPR 271
                 677778999999*********************************99996565 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.7e-05      0.16      12      34 .]     175     197 ..     166     197 .. 0.80
   2 ?   -2.5   0.0         5   8.2e+03       8      19 ..     205     216 ..     203     216 .. 0.82
   3 !   15.8   1.5   6.5e-06     0.011       1      32 [.     235     266 ..     235     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.7e-05
       TPR_2  12 yklgdyeeAleafekAleldPnn 34 
                 + l++   A++afe Al+l+Pnn
  EHT99892.1 175 MVLNNATTARQAFEHALQLAPNN 197
                 66778888**************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
       TPR_2   8 Glayyklgdyee 19 
                 +++++++gd++e
  EHT99892.1 205 AEVLARSGDPQE 216
                 788999999987 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 6.5e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldP 32 
                 a+ l  l++a++++++y++A++a++  l   P
  EHT99892.1 235 ARTLSLLAYAAFEQQHYAQAIAAWQTLLNALP 266
                 577999********************998777 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.067   1.1e+02      24      44 .]     153     173 ..     153     173 .. 0.91
   2 !   13.8   0.4   4.8e-05     0.078       4      42 ..     167     205 ..     164     206 .. 0.93
   3 !   15.7   0.9   1.2e-05      0.02       5      43 ..     202     243 ..     199     244 .. 0.92
   4 ?    4.6   2.4     0.046        75       3      35 ..     237     269 ..     235     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.067
      TPR_14  24 lrralalaPddaeawlllaql 44 
                 lr  l++ Pd++  w +l++l
  EHT99892.1 153 LRSHLQTEPDNLSDWAMLGRL 173
                 67789**************97 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.8e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +++l+++ + l +  +A+++++ al+laP+++++   +a
  EHT99892.1 167 WAMLGRLGMVLNNATTARQAFEHALQLAPNNQVLKQDYA 205
                 999*****************************9998888 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.2e-05
      TPR_14   5 lalaeallalGdpde...AiallrralalaPddaeawlllaq 43 
                 +++ae+l+++Gdp+e   A+ +l+++ +++P +a+++ lla 
  EHT99892.1 202 QDYAEVLARSGDPQEnrqAELVLQDLRKQDPHNARTLSLLAY 243
                 79**********999999*****************9998885 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.046
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                  l +la a ++++ +++Aia+ + +l + P+d+
  EHT99892.1 237 TLSLLAYAAFEQQHYAQAIAAWQTLLNALPADD 269
                 67789*******************999999764 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.3e-05       0.1       4      34 .]     167     197 ..     167     197 .. 0.96
   2 ?    3.8   0.3     0.049        79       1      23 [.     235     257 ..     235     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + +lg++ + l++   A +++e+al+l+p+n
  EHT99892.1 167 WAMLGRLGMVLNNATTARQAFEHALQLAPNN 197
                 899**************************97 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.049
                 CCHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkey 23 
                 a+ + +l+++ ++++ y +A+++
  EHT99892.1 235 ARTLSLLAYAAFEQQHYAQAIAA 257
                 677889***************86 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.002       3.3      19      34 .]     182     197 ..     171     197 .. 0.89
   2 !    8.8   0.4    0.0009       1.5       1      25 [.     235     259 ..     235     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHSTTH CS
       TPR_1  19 eAleyyekALelnPnn 34 
                  A +++e AL+l Pnn
  EHT99892.1 182 TARQAFEHALQLAPNN 197
                 599************8 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0009
                 HHHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyye 25 
                 a++l  l++a f+++ y +A+++ +
  EHT99892.1 235 ARTLSLLAYAAFEQQHYAQAIAAWQ 259
                 78999****************9987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.091   1.5e+02      39      67 ..     169     197 ..     160     198 .. 0.83
   2 ?    5.9   0.7     0.012        20       2      67 ..     169     231 ..     168     235 .. 0.79
   3 !   14.3   6.2   2.9e-05     0.047      13      61 ..     217     262 ..     205     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.091
      TPR_16  39 llgdaalrqgrlaeAaalyraalraapda 67 
                  lg++  ++++ + A+++++ al+ ap++
  EHT99892.1 169 MLGRLGMVLNNATTARQAFEHALQLAPNN 197
                 68888888999999999999999999976 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.012
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +l+r+ + +++ + A+ a+e al ++   P +      ++++++r g+ +e +++ + +++   ++
  EHT99892.1 169 MLGRLGMVLNNATTARQAFEHALQLA---PNNQVLKQDYAEVLARSGDPQENRQAELVLQDLRKQD 231
                 56777778889999999999999999...6555588899999999999999998888887665555 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2.9e-05
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraal 61 
                  ++A+ +l+ ++k+d   P +a+ l ll+ aa++q+ +a A+ a+ + +l
  EHT99892.1 217 NRQAELVLQDLRKQD---PHNARTLSLLAYAAFEQQHYAQAIaAW-QTLL 262
                 689************...************************555.4444 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.063     1e+02      13      32 ..     177     196 ..     148     197 .. 0.83
   2 ?   -0.2   0.0       1.3   2.1e+03      15      32 ..     216     233 ..     204     234 .. 0.76
   3 !   10.7   0.6   0.00041      0.67       5      29 ..     240     264 ..     238     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.063
                 HHHHHHHHHHHHHHHHH-TT CS
       TPR_6  13 lgdtdkAlealerlikeYPd 32 
                 l+++++A++a+e  ++  P+
  EHT99892.1 177 LNNATTARQAFEHALQLAPN 196
                 37999********9999998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHH-TT CS
       TPR_6  15 dtdkAlealerlikeYPd 32 
                 + ++A   l++l+k+ P 
  EHT99892.1 216 ENRQAELVLQDLRKQDPH 233
                 55688889*****99996 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 +la++ ++++ +++A++a++ l++ 
  EHT99892.1 240 LLAYAAFEQQHYAQAIAAWQTLLNA 264
                 5899****88************985 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.8     3e+03       8      34 .]     159     185 ..     157     185 .. 0.74
   2 !   11.4   0.1   0.00021      0.34       2      31 ..     187     216 ..     186     220 .. 0.93
   3 ?    4.8   0.2     0.026        42       7      33 ..     229     255 ..     228     256 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.8
      TPR_17   8 ldPnnadaynnLAelllknGdlmtArq 34 
                  +P+n   + +L++l   +++  tArq
  EHT99892.1 159 TEPDNLSDWAMLGRLGMVLNNATTARQ 185
                 578888889999998777777777776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00021
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmt 31 
                 ++ al+l Pnn ++ + +Ae+l++ Gd+++
  EHT99892.1 187 FEHALQLAPNNQVLKQDYAEVLARSGDPQE 216
                 899************************997 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.026
      TPR_17   7 eldPnnadaynnLAelllknGdlmtAr 33 
                 ++dP na  + +LA++  ++  +++A+
  EHT99892.1 229 KQDPHNARTLSLLAYAAFEQQHYAQAI 255
                 589********************9997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.3   2.4e-05     0.039      20      78 ..     192     257 ..     176     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                 H--HHHHHH...HHHHHHHTT-...HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  20 tespedayl...lAlclylngq...ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaa 78 
                 +  p++  l   +A++l ++g+     +A  +l+++ k+++++ + + l+A +++++++y +Aiaa
  EHT99892.1 192 QLAPNNQVLkqdYAEVLARSGDpqeNRQAELVLQDLrKQDPHNARTLSLLAYAAFEQQHYAQAIAA 257
                 555666666445799999999955556899******999*************************97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.4e-05     0.056      22      64 ..     157     199 ..     145     211 .. 0.91
   2 ?    3.5   0.1     0.049        81      22      49 ..     191     218 ..     190     220 .. 0.90
   3 ?    2.6   3.2     0.094   1.5e+02      25      69 ..     231     276 ..     213     282 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
       TPR_9  22 lllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 l+  Pd  +++   G+l + l++  +A++++e++l+lap+++ 
  EHT99892.1 157 LQTEPDNLSDWAMLGRLGMVLNNATTARQAFEHALQLAPNNQV 199
                 7789***********************************8765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.049
       TPR_9  22 lllaPddpeerrdRGlllaqlGclsaAl 49 
                 l+laP+   +  d + +la++G++++ +
  EHT99892.1 191 LQLAPNNQVLKQDYAEVLARSGDPQENR 218
                 8999*******************99755 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.094
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalap.dapdaeair 69 
                 +P+ ++ +   + + +++ ++++A+a+ ++ l   p d+p ++ i+
  EHT99892.1 231 DPHNARTLSLLAYAAFEQQHYAQAIAAWQTLLNALPaDDPRRDNIA 276
                 7888888888888999999999999999999977776777777665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.087   1.4e+02       7      19 ..     204     216 ..     203     217 .. 0.89
   2 ?    6.8   2.6    0.0076        12       1      24 [.     235     258 ..     235     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.087
       TPR_4   7 LArallalGdlde 19 
                 +A++l++ Gd+ e
  EHT99892.1 204 YAEVLARSGDPQE 216
                 79********976 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0076
       TPR_4   1 arallaLArallalGdldeArall 24 
                 ar+l++LA a++++ ++++A a++
  EHT99892.1 235 ARTLSLLAYAAFEQQHYAQAIAAW 258
                 699*****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3202.00
//
Query:       EHT99893.1  [L=151]
Description: cytochrome c heme lyase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-54  182.3   0.1    3.3e-54  182.1   0.1    1.0  1  CcmH      Cytochrome C biogenesis protein
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.074   12.9   0.0    1.7  2  DUF3797   Domain of unknown function (DUF3797)
      0.029   14.4   0.0      0.049   13.7   0.0    1.4  1  CpXC      CpXC protein
       0.19   11.3   0.6       0.32   10.5   0.6    1.6  1  UPF0220   Uncharacterised protein family (UPF0220)


Domain annotation for each model (and alignments):
>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.1   7.4e-58   3.3e-54       2     143 .]       8     145 ..       7     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 7.4e-58
                 XXXXXXXXXXXXGGGGS--SSHHHHHHHHHHHHHEE-TTSSS-BTTT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTT-EE---XXXXXXXXX CS
        CcmH   2 llllllalaaaaaeedeelkdpaqeararalseeLRClvCqnqsiadSnaelAkdlrrevremlkaGksdeeivdylvarYGdfVlykPpvkastllLW 100
                 l+ ll++++  aa++++ +++ aqe+++r+++++LRC++Cqn+siadSna +A+d+r +v++++k+G+++++i dy+varYG+fV+y+Ppv++st++LW
  EHT99893.1   8 LCGLLFSASLWAAIDTYAFDSVAQEEQYRDITASLRCPKCQNNSIADSNAMIAADMRLKVYQLMKQGQTRQQIFDYMVARYGNFVSYQPPVTPSTVILW 106
                 5678899999***************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CcmH 101 lgPllllllgllvlllllrrrkkkkaeeeelsaeeearleall 143
                 lgP+l++++g++v+++++r+rk    + +els+ee++rlea+l
  EHT99893.1 107 LGPALFVAGGAGVIVWRSRQRK----TCSELSDEEQQRLEAIL 145
                 ********************99....3346**********987 PP

>> DUF3797  Domain of unknown function (DUF3797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.074      15      31 ..      43      59 ..      31      65 .. 0.89
   2 ?   -2.5   0.0       1.1   4.8e+03      27      43 ..     115     131 ..     114     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
     DUF3797 15 qCPeCgNnkvlNsegkv 31
                 CP+C+Nn +  s++ +
  EHT99893.1 43 RCPKCQNNSIADSNAMI 59
                6************9987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
     DUF3797  27 segkviieddtfyreCk 43 
                 +++ vi+     ++ C+
  EHT99893.1 115 GGAGVIVWRSRQRKTCS 131
                 57788888888899996 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.1e-05     0.049       6      73 ..       9      77 ..       7      97 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
        CpXC  6 Cgkefeaeiwtsidade.dpelkeklldgslfeatCpkCgatakleapllyhdpekellillvpesers 73
                Cg  f+a +w  id+   d+ ++e+   +   + +CpkC+++  ++ + ++    +  +++l+ + +++
  EHT99893.1  9 CGLLFSASLWAAIDTYAfDSVAQEEQYRDITASLRCPKCQNNSIADSNAMIAADMRLKVYQLMKQGQTR 77
                888888888888887651555566667777788899999998888888877664444444444444433 PP

>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.6   7.1e-05      0.32      22      53 ..       2      33 ..       1     121 [. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.1e-05
     UPF0220 22 ravgvylaGaLfalgfwlliDaaivskkanas 53
                +a+ ++l G+Lf++ +w  iD+ ++ + a+  
  EHT99893.1  2 KALVTMLCGLLFSASLWAAIDTYAFDSVAQEE 33
                678899****************9987766433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      795  (0.0443416); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 1004.86
//
Query:       EHT99894.1  [L=184]
Description: periplasmic thioredoxin of cytochrome c-type biogenesis [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-24   85.2   0.0    4.3e-24   84.9   0.0    1.1  1  Redoxin        Redoxin
    1.1e-14   54.4   0.0    1.3e-14   54.1   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    1.4e-05   25.5   0.0    2.3e-05   24.8   0.0    1.3  1  Thioredoxin_2  Thioredoxin-like domain
    0.00015   22.0   0.0    0.00024   21.3   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like
     0.0014   18.5   0.0     0.0024   17.9   0.0    1.4  1  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.027   14.7   0.0    1.4  1  Thioredoxin_7  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   1.4e-27   4.3e-24       3     137 ..      41     164 ..      39     172 .. 0.94

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 1.4e-27
                 TSBB---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.HHHHHHHTT-TSEE.EE-TTSHHH CS
     Redoxin   3 gdkaPdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.vkefwgkeglkfpv.lsDgsaaft 98 
                 g+++P f+l+ + t g++++ +   +gk++++n++++ +cPtC+aeh yl++lae+    gv vv+++ ++d + +  +++ +g+++ + l+Dg++ + 
  EHT99894.1  41 GKPLPVFRLEALETPGKTYNQQTlITGKPLLLNVWAT-WCPTCRAEHHYLNTLAEQ----GVRVVGLNYKDDRQkAVTWLNTLGNPYALsLYDGDGMLG 134
                 899**********************************.*********999999666....**************9999999999999999********* PP

                 HHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCH CS
     Redoxin  99 kalGlrleedaseglrtpryavidedgkvvylevepepe 137
                  +lG++         ++p +++id +g ++y++ ++ ++
  EHT99894.1 135 LDLGVY---------GAPETFLIDGNGIIRYRHAGDLNP 164
                 ****99.........******************999874 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   4.4e-18   1.3e-14       1     123 [.      40     156 ..      40     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.4e-18
                 TTSB----EEE..STTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H.SSEE.EE-TTSHH CS
    AhpC-TSA   1 vgdkapdfelk..nadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv.dspeshkkfiekeslnfpl.lsDeegkv 94 
                 +g++ p f l+  ++ g+t++ +++  gkp++l+++++ wcp C++e   l+ l+    e+gv v+g++  d+ ++   + ++ + ++ l l+D +g +
  EHT99894.1  40 IGKPLPVFRLEalETPGKTYNQQTLiTGKPLLLNVWAT-WCPTCRAEHHYLNTLA----EQGVRVVGLNYkDDRQKAVTWLNTLGNPYALsLYDGDGML 133
                 79999*99999555569****99999************.*********9999866....89********999999*************98789****** PP

                 HHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  95 akaygvlkeekglalratfvidkegkiry 123
                   ++gv+        + tf+id +g+iry
  EHT99894.1 134 GLDLGVY------GAPETFLIDGNGIIRY 156
                 *******......9**************9 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.8e-09   2.3e-05       4     103 ..      66     165 ..      63     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 7.8e-09
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.eivarlpG 98 
                    +gkp+l+ +++++Cp C++ +  l +l +  vrv+   +k++ +++++ + +  ++  a+  ++    l+  +gv g P ++++dg+  i +r  G
     EHT99894.1  66 TGKPLLLNVWATWCPTCRAEHHYLNTLAEQGVRVVGLNYKDDRQKAVTWLNTLGNP-YALSLYDGDGMLGLDLGVYGAPETFLIDGNgIIRYRHAG 160
                    79*************************77777766777888877777777777777.68888999999*******************988889888 PP

  Thioredoxin_2  99 yvpae 103
                     +++ 
     EHT99894.1 161 DLNPR 165
                    88776 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.2e-08   0.00024       1      94 [.      67     153 ..      67     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.2e-08
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldknge 94 
                    gk +lL ++a+wcp c+a +  l+ l e+     +v++v +++  ++++    l+    +++++   d+    l   ++v + P ++++d ng 
     EHT99894.1  67 GKPLLLNVWATWCPTCRAEHHYLNTLAEQ-----GVRVVGLNYKDDRQKAVTWLNTL-GNPYALSLYDG-DGMLGLDLGVYGAPETFLIDGNGI 153
                    6899****************999988875.....69********9999999999999.88999999988.5889999*************9995 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.9e-07    0.0024       7      46 ..      56      95 ..      50     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.9e-07
                 HHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHH CS
  Thioredoxin  7 kenFeeevakekklvlveFyApwCghCkalaPeleklaee 46
                  ++++++   + k++l++ +A+wC+ C+a    l++lae+
   EHT99894.1 56 GKTYNQQTLITGKPLLLNVWATWCPTCRAEHHYLNTLAEQ 95
                 577888877779****************988777777776 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.9e-06     0.027      16      34 ..      66      84 ..      59     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.9e-06
                   HT--EEEEE--TT-HHHHH CS
  Thioredoxin_7 16 rgkpvlvffgaswcftCqa 34
                   +gkp+l+++ a+wc+tC+a
     EHT99894.1 66 TGKPLLLNVWATWCPTCRA 84
                   79***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 1684.38
//
Query:       EHT99895.1  [L=652]
Description: heme lyase, CcmF subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-129  431.9   8.2   1.6e-129  431.9   8.2    2.8  3  CcmF_C           Cytochrome c-type biogenesis protein CcmF C-
    1.5e-54  185.0  20.1    1.5e-54  185.0  20.1    3.2  4  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
      0.075   13.0   1.4       0.31   11.0   0.0    2.4  2  UPF0542          Uncharacterised protein family UPF0542
       0.12   10.9  67.7       0.12   10.9  20.2    3.0  3  DUF2339          Predicted membrane protein (DUF2339)


Domain annotation for each model (and alignments):
>> CcmF_C  Cytochrome c-type biogenesis protein CcmF C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   2.8      0.47   2.1e+03      81     136 ..      10      70 ..       5     131 .. 0.70
   2 ?   -4.8   5.0       2.7   1.2e+04      98     192 ..     206     304 ..     181     309 .. 0.47
   3 !  431.9   8.2  3.5e-133  1.6e-129       1     322 [.     316     637 ..     316     638 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.47
      CcmF_C  81 vplmvplllllgvGpll.rWkra.klaellkrllvalvlalvlall...lalllgelkvla 136
                 + l v+l+lll v pl  +W+++ +l+ l++ l+v l+ +++ a+    +a+++++++v  
  EHT99895.1  10 LCLGVALALLLSVYPLWgAWRQDaRLMGLARPLAVGLFGCVAGAFGllvWAFIVNDFTVSY 70 
                 5677888888888887647988636788888888885544333333312222334454444 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 2.7
      CcmF_C  98 rWkraklaellkrllvalvlalvlalllalll.........gelkvlaalglalavwvvlaalaelaerlrakakellarlrklprsawGmvlAHlGva 187
                 rW r  +++++  l+    + +vl+ ++a++          + ++  a +   la   ++++la   +r + ka ++l  ++ ++ s +G+ l   Gv 
  EHT99895.1 206 RWSRPWTTAAWLFLT----IGIVLGSAWAYYElgwggwwfwDPVE-NASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAITAFSLSLLGTFLVRSGVL 299
                 333332222222222....33333333222112232111122222.22222333334444444444445466667777788888888888888888888 PP

      CcmF_C 188 vtvlG 192
                 v+v +
  EHT99895.1 300 VSVHA 304
                 88765 PP

  == domain 3  score: 431.9 bits;  conditional E-value: 3.5e-133
      CcmF_C   1 LalLvvviGgsLlLfalrapklksggrfalvSREsaLllnNllLvvaaavVllGTLyPlvldalglgkiSVGaPyFnavfvplmvplllllgvGpllrW 99 
                 La+Lv+viG+sLlL+al++ +++s+ + al+SREs+Ll nN+lL++a++v llGTL+Plv+++lglg+iSVG+P+Fn++f +lm+pl+l+lg+Gpl+rW
  EHT99895.1 316 LAFLVIVIGSSLLLYALKGGQVRSRVQNALWSRESFLLGNNVLLIAAMLVLLLGTLLPLVHKQLGLGSISVGQPFFNTLFSWLMAPLALMLGIGPLVRW 414
                 89************************************************************************************************* PP

      CcmF_C 100 kraklaellkrllvalvlalvlalllal.llgelkvlaalglalavwvvlaalaelaerlrakakellarlrklprsawGmvlAHlGvavtvlGvalvs 197
                 +r+++++l++rll+al+++l++++ll++ l++++++++++gl++avw+++ +l+el+er+ +++++++++lr+l+rs+wGmvl+HlGv+vtv+G+a+++
  EHT99895.1 415 RRDEPQKLVRRLLLALAVTLLASVLLPWwLQDRVEAMTVVGLLMAVWIIVLTLMELHERA-THRHSFFTGLRHLSRSHWGMVLGHLGVGVTVIGIAFST 512
                 ****************************55599**************************9.799*********************************** PP

      CcmF_C 198 ayeverdvrlkpgesvevagyefefegveeveGpNYtaeraelevsrdgkevatlepekRlYtvqempmteaaidagllrdlYvalGeeledeawavrl 296
                 +y+verdvr+k+g+sv++++y+f f++v++++GpNY++  a ++v+rdg++ a l++ekR+Y++++++mteaaid g++rdlY+alGeel+d++wavr+
  EHT99895.1 513 QYSVERDVRMKAGDSVDIHRYHFVFRDVQDLQGPNYSGGVAVIDVTRDGQPEAMLYAEKRFYSAARTMMTEAAIDGGFTRDLYAALGEELNDGSWAVRI 611
                 *************************************************************************************************** PP

      CcmF_C 297 yvkpfvrwiWlGallmalGGllalld 322
                 y+kpfvrwiW+G+l+ma+GGll+lld
  EHT99895.1 612 YYKPFVRWIWFGGLFMAAGGLLCLLD 637
                 ************************98 PP

>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.1   4.7e+03      27      50 ..      40      63 ..      11      80 .. 0.63
   2 !  185.0  20.1   3.4e-58   1.5e-54       1     208 [.      89     296 ..      89     299 .. 0.98
   3 ?   -4.7   5.2       3.9   1.7e+04      81     179 ..     316     408 ..     312     445 .. 0.64
   4 ?   -1.6   1.1      0.43   1.9e+03     169     204 ..     429     465 ..     413     472 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
  Cytochrom_C_asm 27 rklnlsllaavaliaalillgfal 50
                     r+l + l++ va  + l++++f++
       EHT99895.1 40 RPLAVGLFGCVAGAFGLLVWAFIV 63
                     455555555555555555555554 PP

  == domain 2  score: 185.0 bits;  conditional E-value: 3.4e-58
  Cytochrom_C_asm   1 lsnleesllllawilsllgllleylarklnlsllaavaliaalillgfalf..........lllaelqesadlnpalqspilmiHvplallsYa 84 
                      ++ +e+slll++++ls ++l ++ ++r+++ + la+v++++ +i+lgf+lf          +l+  + +++dlnp+lq+ +l++H+pl++++Y+
       EHT99895.1  89 WGAHEGSLLLWVLLLSGWTLAVAIFSRGMPQDALARVLAVMGMITLGFLLFiiltsnpfsrTLPDFPVDGRDLNPMLQDIGLIFHPPLLYMGYV 182
                      899******************************************************************************************* PP

  Cytochrom_C_asm  85 tliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWa..eeaWGsywsWDpketaslitWlvfaallh 176
                      +++++++++ia l                  +l ++++r+s+ ++++++++ltigi+lGs Wa  e++WG++w+WDp+e+as+++Wl  +al+h
       EHT99895.1 183 GFSVAFAFAIASL---------------MAGRLDTAWARWSRPWTTAAWLFLTIGIVLGSAWAyyELGWGGWWFWDPVENASFMPWLAGTALMH 261
                      *************...............78999************************************************************* PP

  Cytochrom_C_asm 177 sri..ek.gwrgkkaailailgflllllayfgvrl 208
                      s +  ek g  + ++++lai++f l+ll++f+vr+
       EHT99895.1 262 SLAvtEKrGTFKAWTVLLAITAFSLSLLGTFLVRS 296
                      **999888**************************9 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 3.9
  Cytochrom_C_asm  81 lsYatliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaal 174
                      l++ +  ig++l + +l     +  +  + +++ l++ +++      + ++++++l++g +l  v+ ++++Gs  +  +     l++Wl++  +
       EHT99895.1 316 LAFLVIVIGSSLLLYAL-----KGGQVRSRVQNALWSRESFLLGNNVLLIAAMLVLLLGTLLPLVHKQLGLGSISV-GQPFFNTLFSWLMAPLA 403
                      44445555555544444.....334556667777777777777777777777778888888888888888887777.44444566677766666 PP

  Cytochrom_C_asm 175 lhsri 179
                      l++ i
       EHT99895.1 404 LMLGI 408
                      65555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.43
  Cytochrom_C_asm 169 lvfaallhsriekgwrgkkaailailgfll.lllayf 204
                       ++ +ll+s++   w+++++  ++++g+l+ ++++ +
       EHT99895.1 429 ALAVTLLASVLLPWWLQDRVEAMTVVGLLMaVWIIVL 465
                      4555666666655677777777777776432566544 PP

>> UPF0542  Uncharacterised protein family UPF0542
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.3      0.27   1.2e+03       4      36 ..     253     286 ..     251     294 .. 0.72
   2 ?   11.0   0.0     7e-05      0.31      12      51 ..     411     450 ..     406     453 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
     UPF0542   4 wlskvalqlvlyvakdPweF.lttvlliltPlll 36 
                 wl+  al   l v++  + F   tvll++t + l
  EHT99895.1 253 WLAGTALMHSLAVTEKRGTFkAWTVLLAITAFSL 286
                 667777777777888888883459******8854 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7e-05
     UPF0542  12 lvlyvakdPweFlttvlliltPllllsaflsyKLakelkk 51 
                 lv++  ++P + +  +ll+l+  ll+s+ l + L   +++
  EHT99895.1 411 LVRWRRDEPQKLVRRLLLALAVTLLASVLLPWWLQDRVEA 450
                 799*******************************998886 PP

>> DUF2339  Predicted membrane protein (DUF2339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  41.5   0.00059       2.6     301     613 ..      12     336 ..       4     341 .. 0.60
   2 ?   10.9  20.2   2.7e-05      0.12     447     608 ..     316     466 ..     310     480 .. 0.69
   3 ?   -0.1   0.0      0.06   2.7e+02       8      28 ..     499     519 ..     493     520 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00059
     DUF2339 301 ltvalAlegaalawlaglrqkrrlarlfgllalrlllaaalllalvllrl.........alalsllvllpllllllllkekelgalvwlllgyglpaaa 390
                 l valAl + ++ ++ + rq  rl+ l+ +la+ l+  +a++ +l+++ +         +++ s+ +l ++  ++++++++e + l+w+ll  g  +a+
  EHT99895.1  12 LGVALALLLSVYPLWGAWRQDARLMGLARPLAVGLFGCVAGAFGLLVWAFivndftvsyVVNNSNSLLPVYYRIAATWGAHEGSLLLWVLLLSGWTLAV 110
                 456677666666554667899999999999999998888888888888887777788888888888888887888888766555555744333333332 PP

     DUF2339 391 lalaawllrrre..dklarvleaaal.lllllllavelryalaggl...................lfagswaslaeallalpvlvllalallllarrra 467
                 + ++          d+larvl++ ++ +l+ ll  ++++  ++++l                   +f+ +  +++ +  ++ v+   a+a+++l + r 
  EHT99895.1 111 AIFSRG-----MpqDALARVLAVMGMiTLGFLLFIILTSNPFSRTLpdfpvdgrdlnpmlqdiglIFHPPLLYMGYV--GFSVA--FAFAIASLMAGR- 199
                 222222.....134567777777554044445555555566666668888888888777777766555455555333..44444..355555555444. PP

     DUF2339 468 saslaslyragaalllllallllllllvvvlanpll.igeavgglpllNpldlalllplvlllllarllkraappaegklrr.aaaalalalaalffvl 564
                    l  ++ ++++  +++a+l l + +v+ +  ++   ++ +gg+++++p++ a  +p ++  +l+ +l+ ++++ + k+ + ++a+ a+      + l
  EHT99895.1 200 ---LDTAWARWSRPWTTAAWLFLTIGIVLGS--AWAyYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTvLLAITAFS-----LSL 288
                 ...4444445556666666666666666632..23323445**************888888888877777333333333222133333333.....333 PP

     DUF2339 565 lnvvlir..vpwqgaalllsrgvqqaElyslsvlwlllavallllglrrgs 613
                 l + l+r  v+++ +a +++ + +   +++l+ l  +++  lll++l+ g+
  EHT99895.1 289 LGTFLVRsgVLVSVHAFASDPARG---MFILAFLVIVIGSSLLLYALKGGQ 336
                 334446777444444443332222...59*****************98776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.7e-05
     DUF2339 447 lalpvlvll.alallllarrrasas......laslyragaalllllallllllllvv.vlanpll.igeavgglpllNpldlalllplvlllllarllk 536
                 la+ v+v+   l+l++l++ + +++       +  +  g ++ll++a+l+lll  ++   +++l   +++vg+ p++N+l  +l +pl+l+l +  l++
  EHT99895.1 316 LAFLVIVIGsSLLLYALKGGQVRSRvqnalwSRESFLLGNNVLLIAAMLVLLLGTLLpLVHKQLGlGSISVGQ-PFFNTLFSWLMAPLALMLGIGPLVR 413
                 4556666666777777888887777666655444555666688888888888888875545455434445777.******9999************999 PP

     DUF2339 537 raappaegklrraaaalalalaalffvllnvvlirvpwqgaalllsrgvqqaElyslsvlwlllavallllg 608
                 +++  ++   rr       +l+al+++ll  + +  pw+ +     + v      +++v+ ll+av  ++l 
  EHT99895.1 414 WRRDEPQKLVRR-------LLLALAVTLL--ASVLLPWWLQ-----DRVE-----AMTVVGLLMAVWIIVLT 466
                 777777776555.......5666666666..2333577754.....3566.....78888888888777764 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.06
     DUF2339   8 lGgllLalGgafLvkYaieqg 28 
                 lG+ + ++G+af  +Y++e++
  EHT99895.1 499 LGVGVTVIGIAFSTQYSVERD 519
                 89999************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 4709.00
//
Query:       EHT99896.1  [L=161]
Description: periplasmic heme chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-41  141.2   0.0      2e-41  141.0   0.0    1.0  1  CcmE      CcmE


Domain annotation for each model (and alignments):
>> CcmE  CcmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.0   1.1e-45     2e-41       1     128 []       4     137 ..       4     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 1.1e-45
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSXXBXTTTTTS-......-S-TTSEEEEEEEE-TTT-EE-TTSSEEEEEEE-T.-EEEEEEES---TT CS
        CcmE   1 rrkkrlklivllllvlaavvvlvlsalqenlvyfltpsevlek......kaeegrrlrvgGlVkegsvkrdpesleveFvvtdlekelkVeYegilPdl 93 
                 rr++rl+++v++l++l+++++lv++al++n+++f+tp e+le+      ++e g+rlrvgG+V++gsv+rdp +l v+F+++d++  ++V++ gilPdl
  EHT99896.1   4 RRRNRLYVVVAILTGLGLATALVMYALRSNIDLFYTPGEILEGkgdahiRPEPGQRLRVGGVVMPGSVTRDPRTLAVSFQLYDGRGVVSVNFVGILPDL 102
                 5899**************************************9999997788*******************************999************* PP

                 --TTSEEEEEEEE-TTSEEEECCEEESS-XXXX.H CS
        CcmE  94 FregqgvvveGrleedgvfeAeevlaKhdekYmpk 128
                 Fregqgvv++G le ++ ++A+evlaKhde+Y+p+
  EHT99896.1 103 FREGQGVVAQGVLEPGNLINAKEVLAKHDENYTPP 137
                 *********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1295.87
//
Query:       EHT99897.1  [L=77]
Description: cytochrome c biogenesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-17   63.5   2.4      2e-17   63.0   2.4    1.3  1  CcmD      Heme exporter protein D (CcmD)
     0.0078   15.0   0.4     0.0085   14.9   0.4    1.0  1  ResB      ResB-like family


Domain annotation for each model (and alignments):
>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   2.4   2.2e-21     2e-17       1      44 []      15      58 ..      15      58 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.2e-21
        CcmD  1 GgYafYVWlsYgitllvlagLilwslrdrrrllrelrrleaReq 44
                GgYafYVWl+++ +l+ l gLi++s++ +rrll+++r++ aRe+
  EHT99897.1 15 GGYAFYVWLAVAGALVPLCGLIVHSWWSHRRLLADIRQRDARER 58
                9*****************************************96 PP

>> ResB  ResB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   9.5e-07    0.0085     438     483 ..      20      66 ..      16      76 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.5e-07
        ResB 438 gknlvllgalllvlGlvlslyvrhrRvWvrieae.dggskvelagla 483
                  ++l+ +gal+ + Gl++  +++hrR+ + i+++ +++ ++ +a  +
  EHT99897.1  20 YVWLAVAGALVPLCGLIVHSWWSHRRLLADIRQRdARERRLRAASVK 66 
                 689****************************6554444555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 669.36
//
Query:       EHT99898.1  [L=246]
Description: membrane component of an ABC superfamily heme exporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-32  110.5  18.8    9.8e-32  110.5  18.8    1.5  2  Cytochrom_C_asm  Cytochrome C assembly protein


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5  18.8   5.4e-36   9.8e-32      34     214 .]      27     184 ..       5     184 .. 0.91
   2 ?   -2.8   0.1      0.25   4.5e+03     127     141 ..     204     218 ..     200     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 5.4e-36
  Cytochrom_C_asm  34 laavaliaalillgfalflllaelqesadlnpalqspilmiHvplallsYatliigallsialliierqlkkkkklklsanlkllkqldrlsyr 127
                      l ++a++++++++gf  +        +ad++++ + +i++iHvp+a++s+++++ +a++++  +                 ++++k +d +s +
       EHT99898.1  27 LTSAAVLLLAWIWGFGYA--------PADYQQGDSFRIMYIHVPAAMWSMGIYSAMAVAAFTGV-----------------VWQMKMADLVSAA 95 
                      455566666777888888........9*************************************.................************* PP

  Cytochrom_C_asm 128 iiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaallhsri..ek.gwrgkkaailailgflllllayfgvrllgeglh 214
                      +++iG+v+++i++++Gs W++++WG++w+WD+++t++l+++++++++++++       ++g++a +l ++g+++l++++f+v++++ +lh
       EHT99898.1  96 MAPIGAVFTFIALVTGSAWGKPMWGTWWIWDARLTSELVLLFLYLGVIALYQafDGhRMAGRAAGVLILVGVINLPIIHFSVQWWN-TLH 184
                      **************************************************99985559***************************9.787 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.25
  Cytochrom_C_asm 127 riiliGfvlltigii 141
                      r++++G +ll+i++ 
       EHT99898.1 204 RWAILGDLLLFITLT 218
                      677777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2017.29
//
Query:       EHT99899.1  [L=219]
Description: membrane component of an ABC superfamily heme exporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-90  301.7  23.0    2.8e-90  301.6  23.0    1.0  1  CcmB             CcmB protein
      1e-05   25.1   4.4      1e-05   25.1   4.4    1.6  1  ABC2_membrane    ABC-2 type transporter
  ------ inclusion threshold ------
       0.19   11.0  14.4       0.41    9.9  14.4    1.7  1  ABC2_membrane_2  ABC-2 family transporter protein
       0.96    9.4   6.3       0.73    9.8   3.6    2.2  2  ABC2_membrane_4  ABC-2 family transporter protein
        1.8    7.6  17.3       0.87    8.6  13.4    2.2  2  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.6  23.0   7.7e-94   2.8e-90       2     215 .]       3     216 ..       2     216 .. 0.99

  Alignments for each domain:
  == domain 1  score: 301.6 bits;  conditional E-value: 7.7e-94
        CcmB   2 lalllrdlrlalRakgelllgllFfllvvtllplavGPdtallsriapgilWvaallaslLsldrlfaadfedGsLellllapvplellvlaKalAhwl 100
                  +l++r+lr+a+R+++e++++l+Ffl+v+tl+pl++GPd++ l+riapgi+Wvaall+slL+l+rlf++d +dG+Le+lll+pvpl+++vl+K++Ahwl
  EHT99899.1   3 CRLIQRELRIACRRGAEVMNPLWFFLIVITLFPLGIGPDPHQLARIAPGIVWVAALLSSLLALERLFRDDLNDGTLEQLLLSPVPLPVTVLGKIIAHWL 101
                 579************************************************************************************************ PP

        CcmB 101 ltglplvllapllalllnleaaalgllaltLllGtpalsllgavgaAltvgLkrgglLlslLvlPliiPvlifaveaveaaaegldveaalalllaltv 199
                 +tglpl+ll+pl+alll+l++ ++ ++altLllGtp+ls+lga+g+ ltvgL+rgg+LlslLvlPl iPvlifa++a++aa +gl++ ++lall+a+ v
  EHT99899.1 102 VTGLPLILLSPLAALLLSLDMPGWRAVALTLLLGTPTLSFLGAIGVGLTVGLRRGGVLLSLLVLPLAIPVLIFASAAIDAAGQGLAIGGYLALLGAMLV 200
                 *************************************************************************************************** PP

        CcmB 200 vtlvlapfAaaaalri 215
                 v+ +l+pfA+aaalri
  EHT99899.1 201 VSGTLTPFATAAALRI 216
                 **************96 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   4.4   2.8e-09     1e-05       7     172 ..       6     167 ..       1     177 [. 0.79

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.8e-09
  ABC2_membrane   7 lkreflqrwrdpslgllwrliqplllalvfgtvfgnlg...nsedglnr..pgllffsvlflafsaltsvapvferergvlerelvsplyslsayv 97 
                    ++re++ + r+      + +++pl ++l++ t+f  lg   +  + + r  pg++  ++l  + +++ +  +  +   g+le++l sp+ +l++ v
     EHT99899.1   6 IQRELRIACRRG-----AEVMNPLWFFLIVITLFP-LGigpDPHQLA-RiaPGIVWVAALLSS-LLALERLFRDDLNDGTLEQLLLSPV-PLPVTV 92 
                    445554444444.....345677777777777777.55545555555.346************.677777699****************.****** PP

  ABC2_membrane  98 lakvlvelpvsllqalifllivyflvgldlsrf.flflllllltalaasslgllisalapsfedasqlaslvllpl 172
                    l+k++++ +v+ l  ++++ ++ +l++ld+  +   + l+lll + ++s+lg +   l++ ++ +++l sl++lpl
     EHT99899.1  93 LGKIIAHWLVTGLPLILLSPLAALLLSLDMP-GwRAVALTLLLGTPTLSFLGAIGVGLTVGLRRGGVLLSLLVLPL 167
                    *******999999999999999999999997.53556667777777888899999999999999999999999998 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  14.4   0.00011      0.41      96     193 ..      68     158 ..      24     217 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
  ABC2_membrane_2  96 aiagEkergTlkllLskPvsRdeillgKfigglai.gla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSsv 187
                      ++ ++ ++gTl++lL +Pv+    +lgK+i++ ++ gl  i+++        la  l + + + + ++ l++++ + +l   ++ a+g++l + 
       EHT99899.1  68 LFRDDLNDGTLEQLLLSPVPLPVTVLGKIIAHWLVtGLPlILLSP-------LAALLLSLDMPGWRAVALTLLLGTPTLS--FLGAIGVGLTVG 152
                      5678899*************************9881344444444.......5555667788888888888888888888..458888888777 PP

  ABC2_membrane_2 188 arssre 193
                      +r   +
       EHT99899.1 153 LRRGGV 158
                      773222 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.6    0.0002      0.73      66     122 ..      63     120 ..      20     180 .. 0.71
   2 ?   -0.9   0.7      0.39   1.4e+03     114     122 ..     171     179 ..     155     218 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
  ABC2_membrane_4  66 iiasylifrEeqndtlknLltiPvsrtklllaKlivllll.svllmlvtflitvlfal 122
                      +   +l+++   ++tl +Ll+ Pv     +l+K+i+  l+  + l+l++ l+++l++l
       EHT99899.1  63 LALERLFRDDLNDGTLEQLLLSPVPLPVTVLGKIIAHWLVtGLPLILLSPLAALLLSL 120
                      3457899999************************996554045555555555555433 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.39
  ABC2_membrane_4 114 flitvlfal 122
                      +li + +a+
       EHT99899.1 171 VLIFASAAI 179
                      222222222 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.17   6.1e+02     275     304 ..      26      59 ..      18      71 .. 0.53
   2 ?    8.6  13.4   0.00024      0.87     189     278 ..      75     194 ..      48     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.17
  ABC2_membrane_3 275 ivilllsgffgglfp....ledlpsalkwifsii 304
                      ++++++ +f +g++p    l  ++ ++ w++ ++
       EHT99899.1  26 FFLIVITLFPLGIGPdphqLARIAPGIVWVAALL 59 
                      3333444444444444433333446666666655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00024
  ABC2_membrane_3 189 srikelqlvsgvsplqywlskilgdflvyllqlllil..l.lafgl...........................gipfgnlglllllfllfglay 252
                       +++e++l+s+v     +l+ki++ +lv  l+l+l+   + l+++l                           g+++g     +ll+ll + ++
       EHT99899.1  75 DGTLEQLLLSPVPLPVTVLGKIIAHWLVTGLPLILLSplAaLLLSLdmpgwravaltlllgtptlsflgaigvGLTVGLRRGGVLLSLLVLPLA 168
                      4789*****************************9886432367774556666666666666666665553333333332223556666666666 PP

  ABC2_membrane_3 253 ialgyllsslfknsetaqilifivil 278
                      i++  + s++++ ++ + ++ + + l
       EHT99899.1 169 IPVLIFASAAIDAAGQGLAIGGYLAL 194
                      66666666666666666665444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1662.03
//
Query:       EHT99900.1  [L=205]
Description: ATP-binding component of an ABC superfamily heme exporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-27   96.6   0.0    2.3e-27   96.2   0.0    1.1  1  ABC_tran     ABC transporter
    7.9e-12   45.6   0.0    3.4e-05   23.8   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.7e-05   24.4   0.0       0.02   14.3   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0024   17.6   0.3      0.024   14.3   0.3    2.5  1  AAA_30       AAA domain
     0.0043   14.6   0.0     0.0058   14.2   0.0    1.1  1  DUF3584      Protein of unknown function (DUF3584)
     0.0066   17.0   0.0     0.0092   16.5   0.0    1.2  1  AAA_23       AAA domain
  ------ inclusion threshold ------
      0.013   15.9   0.1      0.019   15.4   0.1    1.4  1  AAA_16       AAA ATPase domain
      0.019   14.7   0.0      0.037   13.8   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.025   14.2   0.1       0.38   10.3   0.0    2.5  3  AAA_27       AAA domain
      0.028   14.3   0.0       0.05   13.5   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
      0.038   14.6   0.0       0.29   11.7   0.0    2.0  2  AAA_18       AAA domain
      0.056   12.1   0.0      0.059   12.0   0.0    1.1  1  AAA_13       AAA domain
      0.065   12.1   0.0        0.1   11.4   0.0    1.3  1  AAA_35       AAA-like domain
       0.13   12.2   0.0       0.24   11.4   0.0    1.4  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   1.8e-30   2.3e-27       3     136 ..      19     154 ..      17     155 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 1.8e-30
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklgl 94 
                  +++ +++g +v+i G+nGaGK++Ll++lagl++p+ Ge++++++++++ ++  +++ + +l + p + + l++ en        +de++ +al+++gl
  EHT99900.1  19 ALTFRVSPGDIVQIEGPNGAGKTSLLRILAGLSTPEHGEVRWQSQPVHR-QRDTWHQAMLYLGHLPGISSALSALENlrfyhpdCRDEHLFTALASVGL 116
                 689*********************************************9.999****************************987778889999999999 PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  + ++  +    ++LS Gq++r+alar+ l++++l++lDEp 
  EHT99900.1 117 AGYEEVAA----AQLSAGQQRRIALARLWLTQATLWILDEPL 154
                 99777777....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.9e-07   0.00063       6      23 ..      34      51 ..      32      76 .. 0.79
   2 !   23.8   0.1   2.6e-08   3.4e-05     229     299 ..     119     186 ..     117     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.9e-07
      AAA_21  6 GpNgsGKSnLLdaldlla 23
                GpNg+GK++LL++l +l+
  EHT99900.1 34 GPNGAGKTSLLRILAGLS 51
                9*************9994 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.6e-08
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 + e+ a++lS G++r +al+ + l ++   +l ++DEp + L++  +++l+  + ++++ g+ vi+t+H+ 
  EHT99900.1 119 YEEVAAAQLSAGQQRRIALARLWLTQA---TLWILDEPLTALDHTGVETLMSRFVAHTQQGGSVIVTSHQA 186
                 57899***********88888888888...*********************555555555*********85 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0     0.001       1.3      26      42 ..      29      45 ..       5      62 .. 0.82
   2 !   14.3   0.0   1.6e-05      0.02     135     198 ..     125     185 ..      84     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                +  i GpNG+GK++ll 
  EHT99900.1 29 IVQIEGPNGAGKTSLLR 45
                66799*********985 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.6e-05
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr 198
                  +LS G++  +ala l       +a l++lDe   aLD++ v+ + +++ +++++   +iv+s++
  EHT99900.1 125 AQLSAGQQRRIALARL----WLTQATLWILDEPLTALDHTGVETLMSRFVAHTQQgGSVIVTSHQ 185
                 5899999998888766....678899*****************9988877666664899999997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   1.9e-05     0.024      16      63 ..      25      96 ..      14     186 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa.g.......................grviglAptgkaAkvLa 63
                s+  ++ ++Gp G+GKt +l+ l+ + + + g                       g++ g+++   a ++L+
  EHT99900.1 25 SPGDIVQIEGPNGAGKTSLLRILAGLSTPEhGevrwqsqpvhrqrdtwhqamlylGHLPGISSALSALENLR 96
                5566899*****************999998446666665555555555544444444444444444444444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.5e-06    0.0058      14      37 ..      24      47 ..      20      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.5e-06
     DUF3584 14 ldldghtnieGtNaaGKTtLlrLi 37
                + + + ++ieG N+aGKT+Llr++
  EHT99900.1 24 VSPGDIVQIEGPNGAGKTSLLRIL 47
                5667889***************86 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.2e-06    0.0092      14      39 ..      21      47 ..       2      56 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.2e-06
      AAA_23 14 eidF..sk.gltlItGpNGaGKTTildAi 39
                +  F  s+  ++ I GpNGaGKT++l+ +
  EHT99900.1 21 T--FrvSPgDIVQIEGPNGAGKTSLLRIL 47
                3..3546635889************9876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   1.5e-05     0.019      10      59 ..      14      62 ..       7     182 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
      AAA_16 10 eqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgk 59
                ++L +al  rv+ g   +v + G+ G GK+sl+r l+   + ++g + ++ 
  EHT99900.1 14 RALFEALTfRVSPG--DIVQIEGPNGAGKTSLLRILAGLSTPEHGEVRWQS 62
                46667777567666..69***************999965555544442222 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05     0.037      12      45 ..      17      50 ..      13      60 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqal 45
                f+  t+++++ +++ + Gp+G+GK++ll  ++ l
  EHT99900.1 17 FEALTFRVSPGDIVQIEGPNGAGKTSLLRILAGL 50
                677789999999***************9555555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0003      0.38      18      46 ..      19      47 ..      17      51 .. 0.87
   2 ?    0.6   0.0      0.28   3.6e+02      38      55 ..      84     101 ..      83     166 .. 0.76
   3 ?   -1.3   0.0         1   1.3e+03     124     167 ..     156     199 ..     152     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAi 46
                 l+f+ +  d+  i GpN AGK+++lr +
  EHT99900.1 19 ALTFRVSPGDIVQIEGPNGAGKTSLLRIL 47
                689999999999*************9866 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
      AAA_27  38 GKstalrAisdllfGipe 55 
                 G s+al+A+++l+f  p 
  EHT99900.1  84 GISSALSALENLRFYHPD 101
                 669999999999996665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1
      AAA_27 124 gLdherLreGGealleaegelgqlLfeasaGlaslrevleaLea 167
                 +Ldh+ +++  ++ ++ + + g+++++++ +l +l+  +++++ 
  EHT99900.1 156 ALDHTGVETLMSRFVAHTQQGGSVIVTSHQALPGLTGQINTIRL 199
                 67888888888888888888899999999999888888777765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-05      0.05      85     133 ..      12      61 ..       2      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  ++++ +e+l+ +++  +++ + G+ G+GK++L+  l++  + + gev+ +
   EHT99900.1  12 DERALFEALTFRVSPgDIVQIEGPNGAGKTSLLRILAGLSTPEHGEVRWQ 61 
                  45667888888888779999*****************9888888888754 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.29       3      44 ..      32      84 ..      30     107 .. 0.76
   2 ?    0.8   0.0      0.54   6.9e+02      58      92 ..     163     194 ..     133     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
      AAA_18  3 ltGtpGvGKttlakeLskrlgf............gvnlrdvakenglllevdpe 44
                + G+ G+GKt+l + L+ +               + + rd++ + +l+l+  p 
  EHT99900.1 32 IEGPNGAGKTSLLRILAGL-STpehgevrwqsqpVHRQRDTWHQAMLYLGHLPG 84
                89**************555.2244555588888888999999998888877766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.54
      AAA_18  58 dklldaleenssaleegknlvidghlaeleseaak 92 
                 + l++ + ++    ++g+++++ +h a +  + ++
  EHT99900.1 163 ETLMSRFVAH---TQQGGSVIVTSHQALPGLTGQI 194
                 4455555555...5799999****99988877665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05     0.059      23      58 ..      34      63 ..      29     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
      AAA_13 23 GwNGaGKTtLSrllrslelgetepkfangsieitng 58
                G NGaGKT+L r+l+ l++       ++g+++++++
  EHT99900.1 34 GPNGAGKTSLLRILAGLSTP------EHGEVRWQSQ 63
                99***************653......3456666554 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-05       0.1      29      53 ..      25      48 ..      13      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
      AAA_35 29 kpGalirikapkkmGKtSLlarila 53
                 pG +++i++p+  GKtSLl rila
  EHT99900.1 25 SPGDIVQIEGPNGAGKTSLL-RILA 48
                69****************98.5555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.24      13      40 ..      19      48 ..      10      59 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                HHHHCH..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 13 klakal..gdvilLeGdLGaGKTtlvrgla 40
                +l+  +  gd++ +eG+ GaGKT l r la
  EHT99900.1 19 ALTFRVspGDIVQIEGPNGAGKTSLLRILA 48
                44333356899***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1487.28
//
Query:       EHT99901.1  [L=310]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-39  133.9  15.9    6.4e-39  133.7  15.9    1.0  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7  15.9   3.6e-43   6.4e-39       2     234 ..      40     276 ..      39     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 3.6e-43
                     HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCTTCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSSS.. CS
  Form_Nir_trans   2 ivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaesnpglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkvs.. 94 
                     i+e++ + g+k+++++ ++l++++i+AG+++g + ++  +++ +l+  +   a ll  l +++G+++v++++++LfT+nt++++l+v++k ++  
      EHT99901.1  40 IHEEIRHDGEKELERDGMALLWSAIAAGLLMGASLMAKGIFQVHLDGVP--GAYLLENLGYTFGFVIVIMARQQLFTENTVTAVLPVMHKPTTsn 132
                     6789999*************************************95444..579**********************************6654422 PP

                     CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG....HHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  95 lkkllknwlvvllgNliGsllvalllvvlsgll....aekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafv 185
                     l+ ll++w++vllgNliG+++ al++     ++    ++++ +i+++ ++++ +e+f+++++ +w+++++vw+   a    +k+++i++++++++
      EHT99901.1 133 LGLLLRLWGIVLLGNLIGTAFAALAFN-EMPIFdeatRQAFTDISMKVMEHTPGEMFANAVISGWIIATMVWMFPYAGA--AKLFVIVMMTWLVA 224
                     889*******************96655.4444455669*************************************9976..************** PP

                     HCT---HHHHHHHHHHHHHH...SHHHHHHHCHHHHHHHHHHHHHCCHHHHH CS
  Form_Nir_trans 186 asgfeHsvanmfliplglll...tvadfilknlipvtlGNivGGallvglly 234
                     ++ + H+v+ ++ + + ++     ++ f++   +p++lGN+ GG+l+++l+ 
      EHT99901.1 225 LGDLAHIVVGSVEVLYLVFNgsvPWTAFLWPFAVPTLLGNLTGGTLIFALIS 276
                     *************99999888889***********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1292  (0.072062); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2248.46
//
Query:       EHT99902.1  [L=270]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-24   84.1   0.0    1.9e-23   82.9   0.0    1.6  2  rve            Integrase core domain
    4.2e-22   77.7   0.2    1.5e-21   75.9   0.2    2.0  1  rve_3          Integrase core domain
    4.6e-13   49.1   6.6    8.3e-13   48.3   6.6    1.4  1  HTH_21         HTH-like domain
  ------ inclusion threshold ------
      0.062   13.9   1.1      0.062   13.9   1.1    2.5  3  HTH_32         Homeodomain-like domain
      0.096   12.9   0.0       0.16   12.2   0.0    1.3  1  DDE_Tnp_IS240  DDE domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   4.4e+03      81     101 ..      56      76 ..      10      79 .. 0.68
   2 !   82.9   0.0   5.3e-27   1.9e-23       3     119 .]     106     219 ..     104     219 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
         rve  81 kafrefladlgirvsftrpgr 101
                 +++ ++l++ g  v + r++r
  EHT99902.1  56 RRIWQLLRREGLLVNYKRVYR 76 
                 377777777777777777776 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 5.3e-27
         rve   3 rpgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgr 101
                 +p+  w++D++  ++++g+ ++ +l+ vddf++++l++ + + ++  +v+++l+  + ++g   p ++++D+g+e+t +a+ +++ ++g+++++ +pgr
  EHT99902.1 106 APNLTWSMDFVMDALATGR-RIKCLTCVDDFTKECLTVTVAFGISGVQVTRILDSIALFRGC--PATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGR 201
                 89*********99967666.**********************************77777777..*********************************** PP

         rve 102 pqdnGkvErfhrtlkdei 119
                 p++nG +E+f++ ++de+
  EHT99902.1 202 PTQNGFIESFNGRFRDEC 219
                 ***************996 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.2   4.1e-25   1.5e-21       1      67 []     190     249 ..     190     249 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 4.1e-25
       rve_3   1 lgielsyiapgkPqqNglvEsfngtlrdellneelfrslaearekleawredYNteRPHssLgykTP 67 
                 +g+el++i+pg+P+qNg++Esfng++rde+lne+ f+++++ar+ + +w       RPHs+L+y+TP
  EHT99902.1 190 HGVELRLIQPGRPTQNGFIESFNGRFRDECLNEHGFSDVSHARKTISEW-------RPHSTLNYQTP 249
                 79*********************************************99.......8*********9 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   6.6   2.3e-16   8.3e-13       3      60 .]      36      91 ..      33      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.3e-16
      HTH_21  3 ddallalireifeeskgrYGyrriwaeLrreggvrvnhkrVrRlMrelGLrgvqrrkr 60
                d +l  +i e+  e+ +r Gyrriw  Lrreg + vn krV+Rl++ +GL  ++rr+r
  EHT99902.1 36 DAHLSGRITELALER-RRFGYRRIWQLLRREG-LLVNYKRVYRLYHLNGLGVKRRRRR 91
                3448899*******8.7**************5.66***************66555554 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.1   1.7e-05     0.062      11      72 ..      15      77 ..      10      78 .. 0.78
   2 ?   -1.0   0.1      0.78   2.8e+03      20      33 ..      86      98 ..      80     126 .. 0.56
   3 ?   -2.5   0.0       2.3   8.4e+03      44      56 ..     175     187 ..     168     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
      HTH_32 11 eeGlegLk...drprrgrprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyri 72
                ++ l+gL     r  ++rp   ++ +  ri +l+ e++r+++r++ + l +reg  v +  vyr+
  EHT99902.1 15 ACSLAGLSlstCRYDAQRPA-ADAHLSGRITELALERRRFGYRRIWQLL-RREGLLVNYKRVYRL 77
                66666666433233345775.9999999******8788***********.999899*******96 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.78
      HTH_32 20 rprrgrprklsdev 33
                ++rr+r+  l  e 
  EHT99902.1 86 KRRRRRKG-LATER 98
                33333332.33333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.3
      HTH_32  44 eprWsprqlaarl 56 
                  p++++r l ++ 
  EHT99902.1 175 GPEFTCRALDQWA 187
                 4788888888887 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05      0.16      57     130 ..     165     239 ..     149     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
  DDE_Tnp_IS240  57 lepeeivtDkasaya.salkelkregelfdevshvqvkylnnriEsdhrtlKkrlrptrgfkslksaaktlagfe 130
                    ++p++i tD  + +  +al++   e     +  +  ++ +n  iEs + ++++++   +gf  ++ a+kt++ + 
     EHT99902.1 165 GCPATIRTDQGPEFTcRALDQWAFEHGVELRLIQPGRPTQNGFIESFNGRFRDECLNEHGFSDVSHARKTISEWR 239
                    567777777666664367777777666666667778999*********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2044.86
//
Query:       EHT99903.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-98  327.3   4.1    3.2e-97  325.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    8.1e-15   54.9   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.8   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.029   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.036   12.6   6.9      0.056   12.0   6.9    1.3  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  325.4   0.0  3.8e-100   3.2e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHT99903.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 325.4 bits;  conditional E-value: 3.8e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHT99903.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHT99903.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHT99903.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHT99903.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHT99903.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHT99903.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHT99903.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHT99903.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHT99903.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHT99903.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHT99903.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHT99903.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHT99903.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHT99903.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHT99903.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHT99903.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHT99903.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHT99903.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHT99903.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHT99903.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHT99903.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHT99903.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHT99903.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHT99903.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHT99903.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHT99903.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHT99903.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHT99903.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHT99903.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHT99903.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                     1024  (0.0571142); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.74u 0.23s 00:00:00.97 Elapsed: 00:00:00.39
# Mc/sec: 4028.78
//
Query:       EHT99904.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHT99904.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1007.41
//
Query:       EHT99905.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHT99905.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHT99905.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHT99905.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHT99905.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 849.50
//
Query:       EHT99906.1  [L=83]
Description: hypothetical protein CKS_1995 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00035   20.6   1.0    0.00054   20.0   1.0    1.3  1  Phage_spike  Phage spike trimer
  ------ inclusion threshold ------
       0.12   12.7   0.1        9.4    6.6   0.0    2.1  2  Sigma_reg_N  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.0     6e-08   0.00054       2      30 ..      41      70 ..      40      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6e-08
                 -SEEEEE-SSEEEEESSEEEEEEEEEEE.E CS
  Phage_spike  2 iktatvkAstsitLdtPevecTgnLtvg.t 30
                 + ta ++A+  + + tPe ++Tgn tv  t
   EHT99906.1 41 CSTANITAPGGVNVTTPEMHVTGNITVSvT 70
                 78*************************754 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.001       9.4      36      59 ..       9      35 ..       5      45 .. 0.84
   2 ?    4.5   0.1    0.0046        41      53      76 ..      52      74 ..      42      78 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.001
  Sigma_reg_N 36 yl...aekegnklrevlelaveitsPN 59
                 y+   ++ e+++++e+++ a++itsPN
   EHT99906.1  9 YFggfLNGEPTQFIEFADGAINITSPN 35
                 555558889999*************** PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0046
  Sigma_reg_N 53 veitsPNvyvdsgsvsqsgffgge 76
                 v++t+P ++v +g++++s  f+  
   EHT99906.1 52 VNVTTPEMHV-TGNITVSVTFKPS 74
                 789******9.9999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 637.26
//
Query:       EHT99907.1  [L=383]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-22   80.0   0.0    2.4e-22   79.3   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    2.3e-10   40.0   1.5    4.2e-09   35.9   0.1    3.1  3  HTH_23        Homeodomain-like domain
    5.8e-09   36.4   1.1    3.4e-08   34.0   0.3    2.5  2  HTH_32        Homeodomain-like domain
    5.1e-07   29.6   1.2    1.3e-06   28.4   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.7e-06   27.5   3.9    5.2e-06   26.0   0.3    2.9  3  HTH_33        Winged helix-turn helix
    1.9e-05   24.7   0.3    0.00024   21.2   0.2    2.3  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.038   14.5   0.2      0.073   13.6   0.2    1.4  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.061   13.1   0.6       0.18   11.6   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   1.1e-25   2.4e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 1.1e-25
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99907.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99907.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.9e-12   4.2e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.5   0.0      0.12   2.7e+02      30      38 ..     128     136 ..     126     139 .. 0.88
   3 ?   -2.1   0.1       1.6   3.6e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.9e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99907.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99907.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.6
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99907.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.72   1.6e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.0   0.3   1.5e-11   3.4e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.72
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT99907.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.5e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99907.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.3   5.6e-10   1.3e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.6   0.0       1.3   2.8e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.6e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99907.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT99907.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.3   2.3e-09   5.2e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?    1.2   0.1      0.13   2.9e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -3.3   0.0       3.3   7.5e+03      25      33 ..     314     322 ..     310     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.3e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99907.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99907.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.3
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99907.1 314 SSMWQLLKK 322
                 789****96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   1.1e-07   0.00024       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.8   0.0      0.25   5.7e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99907.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.25
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99907.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   3.3e-05     0.073      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99907.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  6666666667777889**********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     8e-05      0.18      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.2   0.0       1.6   3.6e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT99907.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99907.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3276.46
//
Query:       EHT99908.1  [L=75]
Description: hypothetical protein CKS_1993 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-24   84.7   0.0    4.3e-24   84.4   0.0    1.1  1  DUF333        Domain of unknown function (DUF333)
     0.0037   17.7   3.6     0.0055   17.1   3.6    1.2  1  LPAM_1        Prokaryotic membrane lipoprotein lipid attachme
  ------ inclusion threshold ------
      0.073   13.7   0.0      0.097   13.3   0.0    1.2  1  Involucrin_N  Involucrin of squamous epithelia N-terminus
        2.1    8.3   6.6          3    7.8   6.6    1.3  1  LPAM_2        Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> DUF333  Domain of unknown function (DUF333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.0   9.7e-28   4.3e-24       1      48 []      27      73 ..      27      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 9.7e-28
      DUF333  1 gmaNPAsvyCvkqGGkleiakdadGgqvgyCqlpdGkrceEwaLyrgd 48
                gmaNPAsvyC+k+GGkl i+k++  g+vgyC+lp G+r+eEw+L+r+d
  EHT99908.1 27 GMANPASVYCEKIGGKLDIVKEPG-GEVGYCTLPSGERIEEWTLFRKD 73
                7**********************9.*********************86 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.6   1.2e-06    0.0055       3      18 .]       2      17 ..       2      17 .. 0.97

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
      LPAM_1  3 KillalgalllLsGCs 18
                K+ll+++a++lL+GCs
  EHT99908.1  2 KTLLLISATALLAGCS 17
                89*************9 PP

>> Involucrin_N  Involucrin of squamous epithelia N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.097      19      51 ..      11      43 ..       6      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
  Involucrin_N 19 pLktvspPadtqqEQvkqptplPapCQKvpsel 51
                   L + ++P ++qq Q+  + p  + C K+  +l
    EHT99908.1 11 ALLAGCSPLKVQQHQTGMANPASVYCEKIGGKL 43
                  56678***********************98887 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.6   0.00068         3       1      14 [.       3      16 ..       3      16 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00068
      LPAM_2  1 lllllallllLaGC 14
                +lll+++++lLaGC
  EHT99908.1  3 TLLLISATALLAGC 16
                79************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 635.89
//
Query:       EHT99909.1  [L=159]
Description: phage tail assembly-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   41.9   0.0    1.6e-10   41.2   0.0    1.3  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   9.1e-15   1.6e-10       1      92 [.      72     154 ..      72     156 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 9.1e-15
   Caudo_TAP   1 rkqklfstdtlkieydkeggelpesvvevsdineelkiqpkgkflvsdgeglpawvedkkeeqiqqAeqekqqllaqAseqiaplqdavdlg 92 
                 r+++++s  ++ ++ ++++g+lp+ +v  +         p  +++++dg ++  +++++k++ +++A +++q+ll++A+  +++++++++lg
  EHT99909.1  72 RGKTVYSLTDGSPQLITSLGDLPDGTVSTA---------PAEQYMKWDGSAWVHDANEEKAAFQEKARAQRQSLLTAANVVTSDWRTELQLG 154
                 6899********************777777.........9****************999********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 1506.82
//
Query:       EHT99910.1  [L=296]
Description: putative tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-09   36.5   0.2    3.5e-09   36.5   0.2    1.9  2  Collar    Phage Tail Collar Domain


Domain annotation for each model (and alignments):
>> Collar  Phage Tail Collar Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.31   5.6e+03      10      28 ..      58      76 ..      53      80 .. 0.77
   2 !   36.5   0.2   1.9e-13   3.5e-09       1      57 []     115     162 ..     115     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.31
                S-SSTEEESBS-B--TTT- CS
      Collar 10 lapaGWllcdGqslsisqy 28
                + p+G +  +G ++ ++q+
  EHT99910.1 58 TWPKGATVVNGGTVWRAQN 76
                5688889999999988887 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 1.9e-13
                 T-EEEESSSS-SSTEEESBS-B--TTT-HHHHHHCTTTTSB.-SSSBB--B-TTXXX CS
      Collar   1 GeiipfagnlapaGWllcdGqslsisqypaLfaliGttyGgdgqttfnLPDlrgrfv 57 
                 G+++p++++ +p+ +++ +Gq++++++yp+L+a         ++++++LPD+rg+++
  EHT99910.1 115 GAPVPWPMDKPPEFYAILQGQAFDTTKYPQLAA---------AYPSGKLPDMRGQTI 162
                 89*******************************.........************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 2798.08
//
Query:       EHT99911.1  [L=191]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-31  108.5   0.0      4e-31  108.4   0.0    1.0  1  DUF2612   Protein of unknown function (DUF2612)


Domain annotation for each model (and alignments):
>> DUF2612  Protein of unknown function (DUF2612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   2.2e-35     4e-31       1     180 [.       4     187 ..       4     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 2.2e-35
     DUF2612   1 ylqlilsqyankpklvalvealnqplsdaafiadfladvfdldtAegkgLDvwGrivgvsrvltvplskkyfgFdeag..lgF.....dqgsfkrrsds 92 
                 y++l++sqy  kpk++a+++al++ ++++++ a +++d++d+++A g  L ++G+i g++rvl+ ++ +++f+F++    +gF     +  +++r  d 
  EHT99911.1   4 YADLLISQYGTKPKARATIQALADGMAQSFTGALSVPDMLDIERAGGVNLGIIGKITGQGRVLNGAVAREFFAFKGYPdtRGFqvsntGGSPWYRHGDT 102
                 789***********************************************************************99888899999988999******** PP

     DUF2612  93 ttgltsLddetyRklirakilaniwdgtvpninailrslfadggrvfvlDngdmtmtvyvfefqptavelaiiensdllprpaGVavk 180
                 t+++ +L+d++ R+ ira+ ++n + +t+ +++++++ lf+  gr+ v   g    ++  +++  +a+ l+  +++d+lpr++G++++
  EHT99911.1 103 TSASATLTDAEMRTPIRARCIKNFSGCTLDDLERACELLFG-AGRCLVDVTGPCHWKI--TTTGAEAFVLFCAKSLDVLPRASGMNYT 187
                 ****************************************7.9999999999999995..555567999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1579.41
//
Query:       EHT99912.1  [L=385]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 3064.81
//
Query:       EHT99913.1  [L=52]
Description: hypothetical protein CKS_1987 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 482.39
//
Query:       EHT99914.1  [L=233]
Description: hypothetical protein CKS_1985 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-31  108.6   0.0    2.4e-31  107.7   0.0    1.5  1  Gp138_N      Phage protein Gp138 N-terminal domain
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.026   14.9   0.0    1.6  1  4HBT         Thioesterase superfamily
          1   10.2   5.6       0.93   10.3   2.9    2.1  2  Big_9        Bacterial Ig domain
        4.4    7.5  10.6         13    6.0   6.1    3.1  3  Phage_spike  Phage spike trimer


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   5.3e-35   2.4e-31       1      98 []      16     113 ..      16     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 5.3e-35
     Gp138_N   1 lPgkivsfdpaavtatvqpaikkklsdgetvelpllvdvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlhdlsdafaivG 98 
                 +P+++++fd +++t+t+q ai  ++++g  ++ p+l+dvpv fprggg+++tfpv++Gde++v+f++r+id+w+++G v+++a++r+hd sd+ +++G
  EHT99914.1  16 MPAIVTAFDDKNQTVTLQAAIAGTDENGGAMTPPVLADVPVKFPRGGGFAFTFPVNPGDEGWVLFADRCIDDWFTTGLVSQAAEHRQHDWSDGGFLPG 113
                 8*********************************************************************************************9998 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.8e-06     0.026      30      54 ..     153     177 ..     131     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.8e-06
                 EEEEEEEEEEESS-BBTTCEEEEEE CS
        4HBT  30 lvvvvelsidflrpvrlgdeltvea 54 
                    +v+ +++f++pv+++d+ltv++
  EHT99914.1 153 TKLTVHCQVEFKKPVTMDDTLTVTG 177
                 55799******************97 PP

>> Big_9  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.4   1.8e+03      19      41 ..      24      46 ..      13      71 .. 0.62
   2 ?   10.3   2.9   0.00021      0.93       4      79 ..     155     228 ..     140     230 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.4
       Big_9 19 ddsvtvtedsvlandtdpdgdal 41
                dd  ++ + ++    td +g a+
  EHT99914.1 24 DDKNQTVTLQAAIAGTDENGGAM 46
                33433333344444555555544 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00021
       Big_9   4 vtvtvtpvndaPvavddsvtvtedsvlandtdpdgdaltvtsltvtlvtapanGtvtinadgtltytpnagfsgtd 79 
                 +tv+ + +  +Pv  dd++tvt   + +    + g      +  ++++   ++G vt+++ g+ +   +++++g+ 
  EHT99914.1 155 LTVHCQVEFKKPVTMDDTLTVTGAAAMNGGLSASGGEGA--AAKISGAVEVTGGDVTVDGIGSKSHHHTDSQNGQT 228
                 6777777899************88887755555555543..3357788999***********99999999999986 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.3   5.7e+03       4      10 ..      29      35 ..      27      47 .. 0.63
   2 ?   -1.7   0.0      0.71   3.2e+03      45      54 .]     143     152 ..     136     153 .. 0.77
   3 ?    6.0   6.1    0.0029        13      26      49 ..     167     191 ..     146     212 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
                 EEEEE-S CS
  Phage_spike  4 tatvkAs 10
                 t+t +A+
   EHT99914.1 29 TVTLQAA 35
                 5555553 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.71
                  EESS-EEETT CS
  Phage_spike  45 hsgGnlssnG 54 
                  ++gGn+  nG
   EHT99914.1 143 DTGGNVDING 152
                  4888888887 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0029
                  EEEE.EEEESSEEEEES-EEEESS- CS
  Phage_spike  26 Ltvg.tltvqgGGtikGdithsgGn 49 
                  +t + tltv+g + ++G++++sgG+
   EHT99914.1 167 VTMDdTLTVTGAAAMNGGLSASGGE 191
                  4444455555554555444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2090.72
//
Query:       EHT99915.1  [L=291]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2360.18
//
Query:       EHT99916.1  [L=111]
Description: hypothetical protein CKS_1983 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.024   14.9   0.0    1.2  1  RL11D     Glycoprotein encoding membrane proteins RL5A and RL


Domain annotation for each model (and alignments):
>> RL11D  Glycoprotein encoding membrane proteins RL5A and RL6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.3e-06     0.024       9      54 ..      18      63 ..      12      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-06
       RL11D  9 snltivddkdrlsikwktvfgddGdeslydvtgiG..tavvngnatic 54
                  +t+ d k +ls++++      G+++l+d+t+ G  +a ++g a +c
  EHT99916.1 18 MKVTVGDTKYQLSLRYNP--VPTGGQWLVDITDAGisKALISGYALVC 63
                678999***********9..789*********8773378999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 926.46
//
Query:       EHT99917.1  [L=261]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2051.11
//
Query:       EHT99918.1  [L=606]
Description: hypothetical protein CKS_1981 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0039   16.5   0.2     0.0054   16.0   0.2    1.2  1  SecY      SecY translocase


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     3e-07    0.0054     198     285 ..     303     400 ..     188     413 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3e-07
                 .......TCCCSTHHH...HHHHHHHHHHHHHHHHHTCTTHHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..S CS
        SecY 198 l......lallspsvl...yvvlyvlliifFayfyteitfnpkevaenlkksggfipgirpgketakyLekvlsritliGalflaliavlpdllga..s 285
                 +      la++  +++     +  +l  +f+a  +t+i+    ++a  + +  + ++ +r+g+++  +L++ +  +tli  l+ a++a +++l+++  +
  EHT99918.1 303 IrltgavLAWF-DKWMgsaNGIAIILGSVFLASKWTAIIGLVAKLAAGFLDVAAALELVRDGEAVVAVLTTLIDPLTLIPVLITAAVAGVATLVTQwhK 400
                 13333333333.2344222445666667789********99****************************************************998542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4249.24
//
Query:       EHT99919.1  [L=39]
Description: hypothetical protein CKS_1980 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 303.45
//
Query:       EHT99920.1  [L=96]
Description: Cro repressor family helix-turn-helix motif protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-08   34.0   0.2    6.3e-08   32.6   0.0    1.8  2  HTH_3         Helix-turn-helix
    2.9e-05   24.3   0.4    5.6e-05   23.4   0.5    1.6  1  HTH_31        Helix-turn-helix domain
     0.0009   19.3   0.0     0.0016   18.4   0.0    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
     0.0034   17.4   0.0      0.008   16.2   0.0    1.6  2  HTH_19        Helix-turn-helix domain
     0.0043   16.8   0.1      0.012   15.4   0.1    1.8  1  TetR_N        Bacterial regulatory proteins, tetR family
     0.0065   16.9   0.0     0.0098   16.3   0.0    1.3  1  HTH_26        Cro/C1-type HTH DNA-binding domain
      0.008   15.9   0.6      0.082   12.7   0.4    2.3  2  HTH_8         Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.024   14.6   0.1      0.033   14.1   0.1    1.3  1  HTH_1         Bacterial regulatory helix-turn-helix protein, 
      0.041   14.4   0.0      0.053   14.1   0.0    1.3  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.049   13.8   0.4      0.098   12.8   0.3    1.6  1  HTH_28        Helix-turn-helix domain
      0.063   13.3   0.3        1.6    8.7   0.1    2.3  2  HTH_Crp_2     Crp-like helix-turn-helix domain
       0.11   12.4   0.0       0.19   11.5   0.0    1.5  1  LacI          Bacterial regulatory proteins, lacI family
       0.12   12.2   0.1        0.3   10.9   0.1    1.7  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.1   7.1e+03      12      19 ..      17      24 ..      14      25 .. 0.60
   2 !   32.6   0.0   4.6e-11   6.3e-08       7      51 ..      48      90 ..      42      92 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.1
                HHHHHHHH CS
       HTH_3 12 qeeLAekl 19
                 e++Ae+l
  EHT99920.1 17 EEDMAEYL 24
                56666665 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 4.6e-11
                HTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3  7 qlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51
                ++g++q  +A+++Gvsr +++r  +G rnP   t++k+ kaLg+ 
  EHT99920.1 48 ARGMTQ--VAREAGVSRESLYRALSGNRNPEFGTILKVVKALGLR 90
                699**9..***********************************86 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.5   4.1e-08   5.6e-05      11      57 ..      47      90 ..      19      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.1e-08
      HTH_31 11 eraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +++G++  +vA+ +gvs+  l r  +G r +p  +++ +++ algl 
  EHT99920.1 47 RARGMT--QVAREAGVSRESLYRALSGNR-NPEFGTILKVVKALGLR 90
                345888..9********************.6**************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06    0.0016      25      44 ..      52      71 ..      38      72 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                TTTSSSS---SSSS--SS-- CS
       HTH_7 25 skIAkevnisRsTvYRylad 44
                +++A+e ++sR+++YR l+ 
  EHT99920.1 52 TQVAREAGVSRESLYRALSG 71
                8***************9875 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.2   3.1e+03      20      20 ..      22      22 ..      10      44 .. 0.54
   2 !   16.2   0.0   5.8e-06     0.008      15      54 ..      51      89 ..      45      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.2
      HTH_19 20 e 20
                e
  EHT99920.1 22 E 22
                1 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.8e-06
      HTH_19 15 qeelaerlgisrskisaiEngkkdvpsaelllkiaealgi 54
                + ++a+++g+sr +++   +g++ +p+ +++lk+++alg+
  EHT99920.1 51 MTQVAREAGVSRESLYRALSGNR-NPEFGTILKVVKALGL 89
                568********************.**************97 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   8.6e-06     0.012      18      35 ..      50      67 ..      46      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.6e-06
                -HHHHHHHHTSSHHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalYr 35
                ++ ++A++AGvs+ +lYr
  EHT99920.1 50 GMTQVAREAGVSRESLYR 67
                6899*************8 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.1e-06    0.0098      10      53 ..      50      90 ..      41      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.1e-06
      HTH_26 10 gitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgct 53
                g+  +++ar +g+s+ +l+r ++g  +++ ++t+ k+ +aLg +
  EHT99920.1 50 GM--TQVAREAGVSRESLYRALSGN-RNPEFGTILKVVKALGLR 90
                54..579*****************8.8**************986 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.24   3.4e+02       8      29 ..      22      43 ..      21      44 .. 0.77
   2 !   12.7   0.4   5.9e-05     0.082      21      39 ..      51      69 ..      37      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.24
                HHHHHHHHHTTT-HHHHHHHHT CS
       HTH_8  8 elIeaALertgGnkskAArlLG 29
                e++ a++e++g   +  Ar LG
  EHT99920.1 22 EYLNACMEEAGDDPAFIARALG 43
                789999**99977666677666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.9e-05
                HHHHHHHHTS-HHHHHHHH CS
       HTH_8 21 kskAArlLGisRrtLyrKL 39
                ++++Ar+ G+sR +Lyr L
  EHT99920.1 51 MTQVAREAGVSRESLYRAL 69
                89***************98 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.4e-05     0.033       5      35 ..      40      70 ..      39      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                HHHHHHHHHSSHHHHHHHHTS-HHHHHHHHH CS
       HTH_1  5 rlfvavaeegsftrAAeeLglsqpavsrqik 35
                r++ ++a+++ +t+ A+e g+s  ++ r+++
  EHT99920.1 40 RALGTIARARGMTQVAREAGVSRESLYRALS 70
                67889*********************99997 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.8e-05     0.053      24      50 ..      47      73 ..      36      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.8e-05
  LZ_Tnp_IS481 24 drrtvaqvarelGvslrtaykwlarfr 50
                    r ++qvare+Gvs+++ y+ l+  r
    EHT99920.1 47 RARGMTQVAREAGVSRESLYRALSGNR 73
                  5789****************9887555 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   7.1e-05     0.098       5      34 ..      41      70 ..      35      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.1e-05
      HTH_28  5 iikllaaGhsvreaArelgisrrtvyrWik 34
                ++  +a+ +  +++Are g+sr+++yr ++
  EHT99920.1 41 ALGTIARARGMTQVAREAGVSRESLYRALS 70
                5555666677899**************986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.12   1.7e+02      23      34 ..      16      27 ..       5      31 .. 0.86
   2 ?    8.7   0.1    0.0012       1.6      25      43 ..      52      70 ..      43      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
                HHHHHHHHTTSS CS
   HTH_Crp_2 23 tqeelAsmlGlt 34
                t e++A++l++ 
  EHT99920.1 16 TEEDMAEYLNAC 27
                789******976 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
                HHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 25 eelAsmlGltretvsrils 43
                ++ A+  G++re++ r+ls
  EHT99920.1 52 TQVAREAGVSRESLYRALS 70
                68899************97 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.19       2      26 ..      51      75 ..      50      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                HHHHHHHCTS-HHHHHHHCTTSSSS CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerV 26
                +  VAr+AGVS     r L+++++ 
  EHT99920.1 51 MTQVAREAGVSRESLYRALSGNRNP 75
                667*********9999999988765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00022       0.3      21      39 ..      52      70 ..      39      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
      HTH_23 21 reIAreLgvsrrTvyrwlk 39
                +++Are gvsr  +yr l+
  EHT99920.1 52 TQVAREAGVSRESLYRALS 70
                79**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 828.76
//
Query:       EHT99921.1  [L=82]
Description: HigA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-11   44.0   0.1    2.3e-11   43.6   0.1    1.1  1  HTH_3           Helix-turn-helix
    7.9e-08   32.5   0.2    1.1e-07   32.1   0.2    1.2  1  HTH_31          Helix-turn-helix domain
    1.4e-06   27.9   0.1    2.9e-06   26.9   0.0    1.6  2  HTH_23          Homeodomain-like domain
    2.7e-06   27.3   0.0    3.7e-06   26.9   0.0    1.1  1  HTH_19          Helix-turn-helix domain
      5e-05   23.0   0.1      7e-05   22.5   0.1    1.2  1  LacI            Bacterial regulatory proteins, lacI family
    0.00021   21.3   0.0    0.00037   20.6   0.0    1.4  1  HTH_28          Helix-turn-helix domain
    0.00043   20.2   0.1    0.00077   19.4   0.0    1.5  1  HTH_29          Winged helix-turn helix
     0.0008   19.4   0.0     0.0012   18.9   0.0    1.3  1  HTH_7           Helix-turn-helix domain of resolvase
     0.0019   18.0   0.0     0.0031   17.3   0.0    1.3  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
     0.0037   17.2   0.0        0.1   12.5   0.0    2.2  2  MarR            MarR family
     0.0041   17.0   0.1     0.0095   15.8   0.0    1.6  2  MarR_2          MarR family
     0.0053   16.5   0.0      0.011   15.5   0.0    1.5  1  HTH_8           Bacterial regulatory protein, Fis family
     0.0096   15.5   0.0      0.013   15.2   0.0    1.2  1  CENP-B_N        CENP-B N-terminal DNA-binding domain
     0.0098   15.9   0.0      0.017   15.1   0.0    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.028   14.4   0.0    1.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.014   15.3   0.1      0.045   13.7   0.0    1.8  2  HTH_37          Helix-turn-helix domain
      0.024   14.4   0.0      0.081   12.7   0.0    1.8  2  HTH_30          PucR C-terminal helix-turn-helix domain
      0.028   14.2   0.0      0.058   13.2   0.0    1.5  1  HTH_IclR        IclR helix-turn-helix domain
       0.03   14.2   0.1      0.066   13.1   0.0    1.6  2  Sigma70_ECF     ECF sigma factor
      0.032   14.7   0.0      0.083   13.3   0.0    1.7  2  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.032   14.2   0.0      0.049   13.6   0.0    1.3  1  RWP-RK          RWP-RK domain
      0.036   14.6   0.0      0.047   14.3   0.0    1.3  1  DUF134          Protein of unknown function  DUF134
       0.05   13.4   0.0      0.079   12.7   0.0    1.3  1  HTH_psq         helix-turn-helix, Psq domain
      0.084   12.4   0.1       0.24   11.0   0.0    1.8  2  Sigma70_r4      Sigma-70, region 4
      0.087   12.6   0.1       0.14   12.0   0.1    1.3  1  HTH_38          Helix-turn-helix domain
       0.12   12.6   0.0       0.19   12.0   0.0    1.3  1  HTH_17          Helix-turn-helix domain
       0.18   10.7   0.0       0.19   10.7   0.0    1.0  1  TnsD            Tn7-like transposition protein D


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   3.5e-14   2.3e-11       5      53 ..       4      53 ..       3      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 3.5e-14
                HH.HTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  5 Rk.qlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                R+   g+s +e+A+ lGv+r+t+sri nG + +s +++++l++aLg+s +
  EHT99921.1  4 REyLDGISVTEAAKSLGVTRATLSRILNGNAGISADMALRLEEALGTSAE 53
                44445*****************************************9975 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.2   1.7e-10   1.1e-07       9      59 ..       3      53 ..       2      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.7e-10
      HTH_31  9 lRera.GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                lRe   G+s +e+A+ lgv+++tlsr+ +G  g  s +   +l +alg++ +
  EHT99921.1  3 LREYLdGISVTEAAKSLGVTRATLSRILNGNAG-ISADMALRLEEALGTSAE 53
                56655599************************9.**************9876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.4e-09   2.9e-06      10      40 ..       2      32 ..       1      38 [. 0.89
   2 ?   -2.6   0.0       8.1   5.4e+03      17      24 ..      64      71 ..      60      72 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.4e-09
      HTH_23 10 illllaeGlsvreIAreLgvsrrTvyrwlkr 40
                +l+ +++G+sv+e+A+ Lgv+r T++r+l+ 
  EHT99921.1  2 VLREYLDGISVTEAAKSLGVTRATLSRILNG 32
                7899************************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.1
      HTH_23 17 GlsvreIA 24
                 ++ ++I 
  EHT99921.1 64 LWTASQIQ 71
                67777775 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   5.5e-09   3.7e-06      12      57 ..       9      53 ..       7      59 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 5.5e-09
      HTH_19 12 gltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidle 57
                g++  e a+ lg++r+ +s i ng+   +sa++ l++ ealg ++e
  EHT99921.1  9 GISVTEAAKSLGVTRATLSRILNGNA-GISADMALRLEEALGTSAE 53
                79999*********************.****************988 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.1e-07     7e-05       5      38 ..      15      48 ..      11      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-07
                HHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHH CS
        LacI  5 VArlAGVSkaTVSrvLnnkerVseetrerVeaam 38
                 A+  GV+ aT Sr+Ln++  +s++ + r e+a+
  EHT99921.1 15 AAKSLGVTRATLSRILNGNAGISADMALRLEEAL 48
                58888**********************9999885 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.5e-07   0.00037       5      34 ..       2      31 ..       2      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.5e-07
      HTH_28  5 iikllaaGhsvreaArelgisrrtvyrWik 34
                +++++++G sv+eaA+ lg++r t++r ++
  EHT99921.1  2 VLREYLDGISVTEAAKSLGVTRATLSRILN 31
                689************************987 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-06   0.00077       3      34 ..       1      31 [.       1      43 [. 0.93

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-06
      HTH_29  3 qallllaeGvstvsqiAkllglsrrtvyrwlk 34
                ++l+ + +G s v ++Ak lg++r t  r+l+
  EHT99921.1  1 MVLREYLDGIS-VTEAAKSLGVTRATLSRILN 31
                689999****8.*****************987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.8e-06    0.0012      19      45 .]       7      33 ..       2      33 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.8e-06
                TTT--STTTSSSS---SSSS--SS--S CS
       HTH_7 19 eeGisiskIAkevnisRsTvYRyladn 45
                 +Gis+++ Ak ++++R+T+ R+l+ n
  EHT99921.1  7 LDGISVTEAAKSLGVTRATLSRILNGN 33
                58**********************975 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.7e-06    0.0031      13      47 ..      14      48 ..      10      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.7e-06
  YdaS_antitoxin 13 aLAealgvsqqaVsqWlkgkkqvpaervpeIekat 47
                    + A+ lgv++++ s+ l+g+ +++a   + +e+a 
      EHT99921.1 14 EAAKSLGVTRATLSRILNGNAGISADMALRLEEAL 48
                    569*****************************986 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00015       0.1      15      38 ..       7      30 ..       3      32 .. 0.91
   2 ?    2.5   0.0       0.2   1.4e+02      19      34 ..      60      75 ..      54      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
                STTEEHHHHHHHHTS-HHHHHHHH CS
        MarR 15 qgplsvseLakklgvskstvtrvl 38
                 +++sv+e ak lgv+++t++r+l
  EHT99921.1  7 LDGISVTEAAKSLGVTRATLSRIL 30
                6799******************98 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
                EHHHHHHHHTS-HHHH CS
        MarR 19 svseLakklgvskstv 34
                 +++L+ ++++++++v
  EHT99921.1 60 AQHDLWTASQIQRPAV 75
                578**********998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-05    0.0095      18      43 ..       8      31 ..       2      32 .. 0.91
   2 ?   -2.2   0.0       5.9   3.9e+03      22      27 ..      64      70 ..      46      75 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.4e-05
                TTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 18 pgrdltvgelarrlglsksavsrilk 43
                +g  ++v+e a+ lg++++++sril+
  EHT99921.1  8 DG--ISVTEAAKSLGVTRATLSRILN 31
                55..89******************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.9
                E.EHHHH CS
      MarR_2 22 l.tvgel 27
                l t++++
  EHT99921.1 64 LwTASQI 70
                2233333 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-05     0.011      21      37 ..      12      28 ..       8      30 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
                HHHHHHHHTS-HHHHHH CS
       HTH_8 21 kskAArlLGisRrtLyr 37
                +++AA+ LG++R tL r
  EHT99921.1 12 VTEAAKSLGVTRATLSR 28
                89*************87 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-05     0.013      15      45 ..       2      32 ..       1      39 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
                HHHHHHCTT-HHHHHHHHT--CCHHHHHHHC CS
    CENP-B_N 15 vIqrleegeSkaelarrfnvpestlsdilkn 45
                v +++ +g S+ e a+ ++v + tls+il+ 
  EHT99921.1  2 VLREYLDGISVTEAAKSLGVTRATLSRILNG 32
                567888999********************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-05     0.017      22      43 ..      10      31 ..       6      32 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-05
                HHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrils 43
                ++ +e A  lG+tr t+sril+
  EHT99921.1 10 ISVTEAAKSLGVTRATLSRILN 31
                567899**************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.3e-05     0.028      15      34 ..      11      30 ..       2      32 .. 0.89
   2 ?   -1.5   0.0       3.8   2.5e+03      36      43 ..      43      50 ..      39      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.3e-05
                SHHHHHHHHTS-HHHHHHHH CS
       HTH_1 15 sftrAAeeLglsqpavsrqi 34
                s+t+AA+ Lg++ +++sr +
  EHT99921.1 11 SVTEAAKSLGVTRATLSRIL 30
                9****************976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.8
                HHHHHHTS CS
       HTH_1 36 rLEeelgv 43
                rLEe+lg+
  EHT99921.1 43 RLEEALGT 50
                79999996 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.8e-05     0.045      31      62 ..       9      39 ..       7      55 .. 0.75
   2 ?   -0.8   0.1       2.3   1.6e+03      34      48 ..      61      75 ..      58      78 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-05
                T--HHHHHHHHT--HHHHHHHHTT--TT--HH CS
      HTH_37 31 elsqseaaqllgiaqPkvsrllrgklsrfsld 62
                ++s +eaa+ lg++++ +sr+l+g+   +s d
  EHT99921.1  9 GISVTEAAKSLGVTRATLSRILNGN-AGISAD 39
                57889*****************976.455555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
                HHHHHHHHT--HHHH CS
      HTH_37 34 qseaaqllgiaqPkv 48
                q ++ ++ +i++P v
  EHT99921.1 61 QHDLWTASQIQRPAV 75
                667777888999987 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.081       5      30 ..       3      27 ..       1      31 [. 0.90
   2 ?   -0.9   0.0       2.3   1.5e+03      35      44 ..      43      52 ..      42      69 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
                HHHHHHTTT-HHHHHHHHTS-HHHHH CS
      HTH_30  5 LraylenggnisatAkaLhvHrnTlr 30
                Lr yl+ g +++++Ak+L+v r Tl+
  EHT99921.1  3 LREYLD-GISVTEAAKSLGVTRATLS 27
                899998.7****************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.3
                HHHHHHS--T CS
      HTH_30 35 rieellgldl 44
                r+ee lg + 
  EHT99921.1 43 RLEEALGTSA 52
                7889998875 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.7e-05     0.058      17      40 ..       8      31 ..       2      32 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.7e-05
                SS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 17 qeltlselArrtglpkStvhRlLq 40
                 + +++e A+ +g++++t +R+L+
  EHT99921.1  8 DGISVTEAAKSLGVTRATLSRILN 31
                6789******************97 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.9e-05     0.066     147     172 ..       5      30 ..       1      32 [. 0.89
   2 ?   -1.3   0.0       2.6   1.8e+03     119     130 ..      37      48 ..      26      62 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-05
  Sigma70_ECF 147 rkleGlsveEiAeklgvskrtverrl 172
                   +l+G sv+E+A+ lgv ++t  r l
   EHT99921.1   5 EYLDGISVTEAAKSLGVTRATLSRIL 30 
                  689******************99965 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
  Sigma70_ECF 119 spdelleLdeal 130
                  s+d+ l L+eal
   EHT99921.1  37 SADMALRLEEAL 48 
                  467777777776 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00013     0.083      10      46 ..       9      44 ..       7      53 .. 0.82
   2 ?   -1.7   0.0         6     4e+03      13      24 ..      61      72 ..      56      78 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00013
      HTH_26 10 gitkseLargtgisaatlsrlvkgkpervsldtLdki 46
                gi+++e a+ +g+++atlsr+++g +  +s+d   ++
  EHT99921.1  9 GISVTEAAKSLGVTRATLSRILNGNA-GISADMALRL 44
                7999999*****************84.8877765555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 6
      HTH_26 13 kseLargtgisa 24
                + +L+ ++ i++
  EHT99921.1 61 QHDLWTASQIQR 72
                344555555544 PP

>> RWP-RK  RWP-RK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.4e-05     0.049      13      34 ..      10      31 ..       2      37 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-05
      RWP-RK 13 lplkeAAksLgvskttLKricR 34
                ++++eAAksLgv  +tL ri  
  EHT99921.1 10 ISVTEAAKSLGVTRATLSRILN 31
                5889*************99965 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     7e-05     0.047      45      76 ..       3      35 ..       1      48 [. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7e-05
      DUF134 45 lvdyed.lkqeeaaklmGiskatlwrllteark 76
                l++y d ++  eaak +G+++atl r+l+   +
  EHT99921.1  3 LREYLDgISVTEAAKSLGVTRATLSRILNGNAG 35
                7899876899******************97655 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.079      11      40 ..       5      33 ..       3      37 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
     HTH_psq 11 avvnGkmSirkAArkYgiPrsTLwrrkrgk 40
                 ++ G +S+ +AA+  g+ r TL+r ++g+
  EHT99921.1  5 EYLDG-ISVTEAAKSLGVTRATLSRILNGN 33
                57789.*******************99986 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00036      0.24      17      41 ..       6      30 ..       1      32 [. 0.86
   2 ?   -1.8   0.0       3.4   2.2e+03      36      45 ..      66      75 ..      66      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                HTTT--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4 17 fgeglTleEIgerlgiSrerVrqie 41
                +++g +  E ++ lg++r + ++i+
  EHT99921.1  6 YLDGISVTEAAKSLGVTRATLSRIL 30
                58999***************99996 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.4
                HHHHHHHHHH CS
  Sigma70_r4 36 rVrqiekrAl 45
                +++qi++ A+
  EHT99921.1 66 TASQIQRPAV 75
                6799999876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00021      0.14      19      42 ..       8      31 ..       3      33 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
      HTH_38 19 eGlslreIArrLgrspsTIsRElk 42
                 G s+ e A+ Lg+ + T sR l 
  EHT99921.1  8 DGISVTEAAKSLGVTRATLSRILN 31
                68999****************985 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00028      0.19       3      22 ..      11      30 ..      10      38 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
      HTH_17  3 tveEaAelLgvsrstvyrli 22
                +v EaA+ Lgv r+t+ r +
  EHT99921.1 11 SVTEAAKSLGVTRATLSRIL 30
                799*************9955 PP

>> TnsD  Tn7-like transposition protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.19     198     259 ..       8      63 ..       2      77 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
        TnsD 198 eglslkeiAkelgvdiktVlryakklgllkekkkqkkesrelsskdrekkrkewleliksyp 259
                 +g s+ e+Ak lgv+  t+ r+++ + ++ ++   + e+          + + w+ +++++ 
  EHT99921.1   8 DGISVTEAAKSLGVTRATLSRILNGNAGISADMALRLEEAL------GTSAEMWTGMQAQHD 63 
                 699*********************99999877666555444......444455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 617.58
//
Query:       EHT99922.1  [L=52]
Description: hypothetical protein CKS_1977 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.5   0.8      0.027   14.4   0.8    1.1  1  DUF485    Protein of unknown function, DUF485


Domain annotation for each model (and alignments):
>> DUF485  Protein of unknown function, DUF485
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.8   1.5e-06     0.027      11      42 ..       8      38 ..       2      47 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-06
      DUF485 11 rkrrrfafpltaiflvvYfgfvllvafapdll 42
                ++++  +++l+++fl+ Y ++++l++f+ +++
  EHT99922.1  8 SRHS-EILTLLVLFLGGYALLMVLFSFSMKFM 38
                4444.4678999******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 427.71
//
Query:       EHT99923.1  [L=178]
Description: hypothetical protein CKS_1976 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-19   69.4   0.0    3.9e-19   69.1   0.0    1.1  1  Phage_TAC_9  Phage tail assemb.y chaperone protein, TAC
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.017   15.1   0.0    1.3  1  CcmE         CcmE


Domain annotation for each model (and alignments):
>> Phage_TAC_9  Phage tail assemb.y chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   4.3e-23   3.9e-19       1     128 [.       7     132 ..       7     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 4.3e-23
  Phage_TAC_9   1 fiiedityemtlanaiaakaalkkavkLlkgvDidalakekgvaavalgailsnlGdpevkeiedlvlkytavktadGkt.yrLkpdrlnehfntrrs 97 
                  ++++++ y+mt+ na+  ++ l+k+++ +    +       g  a+a++   s +  +e+ e++ +v+  t v+t  G   ++L +d+ + h+nt+rs
   EHT99923.1   7 LTLDGVDYVMTPVNAVLGWSCLQKLLGAIGRSKMM--NGGDGSMATAIALAFSVMDGKELAELQGMVFGSTVVRTEAGAMaFKL-ADQAETHLNTYRS 101
                  589********************999988776665..445678888888889999*******************9988751566.************* PP

  Phage_TAC_9  98 hllrvlieGlkyqfaDflvGGvaalsdllpn 128
                  hl ++l+eG  yqf Df+ G  a+l +l+p 
   EHT99923.1 102 HLPQLLVEGALYQFEDFFTGIRATLGSLFPG 132
                  ************************9999885 PP

>> CcmE  CcmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.9e-06     0.017      52      98 ..      66     111 ..      48     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-06
                 EEEEEE-TTT-EE-TTSSEEEEEEE-T.-EEEEEEES---TT--TTS CS
        CcmE  52 rvgGlVkegsvkrdpesleveFvvtdlekelkVeYegilPdlFregq 98 
                  ++G+V   +v+r++    + F+++d++++   +Y+  lP+l+ eg+
  EHT99923.1  66 ELQGMVFGSTVVRTE-AGAMAFKLADQAETHLNTYRSHLPQLLVEGA 111
                 689*********985.5689******9999999**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1664.62
//
Query:       EHT99924.1  [L=144]
Description: hypothetical protein CKS_1975 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-05   25.5   0.0    1.2e-05   25.2   0.0    1.0  1  DUF3277        Protein of unknown function (DUF3277)
  ------ inclusion threshold ------
      0.014   16.2   0.0       0.02   15.6   0.0    1.3  1  S8_pro-domain  Peptidase S8 pro-domain


Domain annotation for each model (and alignments):
>> DUF3277  Protein of unknown function (DUF3277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.4e-09   1.2e-05      22     123 ..      17     118 ..      10     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.4e-09
     DUF3277  22 lgsgagvaeeGitvsksedkntmtvgaDGevmhslhagksGtitirllktspvnkkLqalynaqslssaewgsnvitirntaagdvivarsvafrkePd 120
                 + +g  + ++ + ++ ++d   + +ga G ++    +++s  +tir+l+  p  ++L++    q++s   ++  ++ i + +  dv++  ++ f+  P 
  EHT99924.1  17 VITGFTAENNAVDYKYAKDAGEYAIGAHGTGVFISNPDESTVLTIRMLQHHPDVAWLNQQRALQRKSLKSFTPFSLIITDLMNDDVATGSKGFFTALPA 115
                 566666677789999999999*************************************************************************99998 PP

     DUF3277 121 evy 123
                  + 
  EHT99924.1 116 YTR 118
                 664 PP

>> S8_pro-domain  Peptidase S8 pro-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   2.3e-06      0.02      57      77 ..      62      82 ..      44      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
  S8_pro-domain 57 erLakdpkVkwaeqqevlkRv 77
                   + L+++p V w++qq++l+R+
     EHT99924.1 62 RMLQHHPDVAWLNQQRALQRK 82
                   579****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1211.36
//
Query:       EHT99925.1  [L=375]
Description: hypothetical protein CKS_1974 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-68  229.8   1.3    1.3e-60  205.8   0.1    2.0  2  DUF3383   Protein of unknown function (DUF3383)


Domain annotation for each model (and alignments):
>> DUF3383  Protein of unknown function (DUF3383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.3e-09   2.3e-05       2      82 ..       6      90 ..       5      97 .. 0.86
   2 !  205.8   0.1   7.5e-65   1.3e-60     201     477 ..      97     372 ..      92     373 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-09
     DUF3383  2 srivnvtvsviaaaaqardLnalll...stnvidpkervrsyssaadVaadfGta.speyqaAqlyFnqspkpkeLliarwakta 82
                +++++vtv+  a   +a+d++++ l    ++ +  +  +r+y ++++ + df+ a s   ++A+l+F+q ++p+ L++a w +  
  EHT99925.1  6 DDVISVTVNAPADVVSAADFGTVTLfttEAAGVFDDDVYRKYGNLKAFQGDFPDAgSALLSTAELFFEQPSRPQYLYVALWPADS 90
                689********************9997522346678899*************965388999********************7765 PP

  == domain 2  score: 205.8 bits;  conditional E-value: 7.5e-65
     DUF3383 201 paeavaaleavsnnwygltfadaaltddqllavAawieaqnkkylygattqeaaaldatnttdlasklkalaykrtvlqysst....dpyaaasalgra 295
                 ++ea ++l+a  ++wy+ +   + l+d++++++ awi+a++k   +++t+ +++al      + +++l++++y rt+l+ + t     p  a+sa + +
  EHT99925.1  97 LSEAYENLNASWSGWYCGAPVGEVLDDEEFEEACAWIQAAGKIQAVTITDISSKAL------AKIKALAEKQYYRTLLLADRTvsmpGPSGAVSAAALL 189
                 6778888888888888777789*****************99944444433333333......335899999999999999887544457789******* PP

     DUF3383 296 asvnFnannttitlkFkqepgitae.vltstqadaldaknyNyYgnynnntailqeGvlsgg.kfiDeianedWLknaiqkavfnlLltsptkiPqtda 392
                 +s+nF+a  + +tlkFk  +g+t++  ++s++ad+lda+++NyY+++  + a+l+eG + g+  ++De++++dWLkn+iq++ fn++ +  +ki  +da
  EHT99925.1 190 CSINFSASDSLLTLKFKTLTGVTPDpDMDSPTADKLDALGINYYTKF-GTKAMLAEGWMLGQvYWADEVIGLDWLKNKIQTNTFNAFAEL-KKIALSDA 286
                 ***********************995699******************.7889**************************************.******** PP

     DUF3383 393 GealiaaaiedvidqavnnGliapGvwnsagf.aLsagqkltkGYyvyappiasqsqadreaRksvpiqlaykeagaihsvdisvn 477
                 G + i   i +v+  av+nGl+ pG+w ++ + +L++g++l+ GYy+ya+++++ s+ d++aRk +pi + + +aga+hsv+i+vn
  EHT99925.1 287 GVTTIKGYIDAVMRMAVKNGLVGPGIWAGDKVgQLATGDYLESGYYIYADSVDTLSDDDKKARKCPPINVCAHLAGAVHSVQIIVN 372
                 ***********************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2613.24
//
Query:       EHT99926.1  [L=154]
Description: hypothetical protein CKS_1973 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1110.10
//
Query:       EHT99927.1  [L=104]
Description: hypothetical protein CKS_1972 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 914.95
//
Query:       EHT99928.1  [L=172]
Description: hypothetical protein CKS_1971 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1532.64
//
Query:       EHT99929.1  [L=157]
Description: hypothetical protein CKS_1970 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1336.93
//
Query:       EHT99930.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHT99930.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHT99930.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHT99930.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3044.10
//
Query:       EHT99931.1  [L=317]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2398.41
//
Query:       EHT99932.1  [L=260]
Description: hypothetical protein CKS_1967 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   13.3   0.6      0.031   12.8   0.6    1.1  1  ICL       Isocitrate lyase family
      0.066   14.2   0.6       0.13   13.2   0.6    1.5  1  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 
      0.092   12.8   0.3        0.3   11.1   0.0    2.0  2  HTH_29    Winged helix-turn helix
       0.15   12.4   0.0       0.41   11.1   0.0    1.6  1  DUF760    Protein of unknown function (DUF760)


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   6.9e-06     0.031     237     345 ..      32     144 ..      25     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.9e-06
                 EEES-TT-GGGGGGEEEE--TTS--HHHHHHH....HHHS---SHHHHHHHHHHHHHS-EE-SHHHHHHHHHTSS-S-HHHHHHHHHHHHTT--HH... CS
         ICL 237 tlitstidtrdhafilGatnpdleeladllve....aeaeGksGaelqaiedewlkkaglklfeeavvdeieksklsnkkelikkftkkvkplselsnk 331
                   i+  id r    + G   ++ e l ++ ++    a  +G++ +++++i + +  + + kl+ e  +d++ +++++  ++ ++k  ++++++ e ++ 
  EHT99932.1  32 PEIQQIIDARVNSVVTGLKTKNSELLGTIKQQkdnlARFDGIDPDAVKTILQRFSDDEEAKLIAEGKIDDVLNKRTERLRADVEKQIQAANERAEKAEA 130
                 568999****************9999999876444467899**************************************************99999999 PP

                 HHHHHHHHHHSS-- CS
         ICL 332 earklakellgkdi 345
                  +rk+++++lg  i
  EHT99932.1 131 FTRKFSDRVLGDAI 144
                 99999999998765 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   2.9e-05      0.13      17      81 ..      67     136 ..      42     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
      FKBP_N  17 kaqgkeldkdavlaGlkdalkgksk.ltde.eiqevlqalqeklqekq...eeeaeknkaegeaFlaenk 81 
                  a ++ +d dav   l+   +++++ l  e +i++vl++  e+l++      ++a++ ++++eaF  +++
  EHT99932.1  67 LARFDGIDPDAVKTILQRFSDDEEAkLIAEgKIDDVLNKRTERLRADVekqIQAANERAEKAEAFTRKFS 136
                 234788999*999999999966555565777*********998866552225688999999999999886 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.8e-05       0.3      16      45 ..      65      94 ..      55     112 .. 0.87
   2 ?   -1.7   0.2       0.7   3.2e+03      43      62 ..     221     242 ..     215     243 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.8e-05
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaall 45
                 ++A++ g++++ v ++l rf  +++a+l+
  EHT99932.1 65 DNLARFDGIDPDAVKTILQRFSDDEEAKLI 94
                689**********************99986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.7
      HTH_29  43 alld.rrrsgrprn.rlseeqe 62 
                 a  + + ++g++++ ++s +q+
  EHT99932.1 221 AGGHrSGAGGALKRsVMSSQQK 242
                 4434355567777767776665 PP

>> DUF760  Protein of unknown function (DUF760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.1e-05      0.41      21      59 ..      30      69 ..      27      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.1e-05
      DUF760 21 hspevleaikehvsgllgsle.pslqfqtliqisrdklaq 59
                ++pe++++i   v++++ +l+ ++++   +i++++d+la+
  EHT99932.1 30 ITPEIQQIIDARVNSVVTGLKtKNSELLGTIKQQKDNLAR 69
                579*****************98888888**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      821  (0.0457917); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2107.96
//
Query:       EHT99933.1  [L=350]
Description: hypothetical protein CKS_1966 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0035   18.1   0.1     0.0059   17.3   0.1    1.4  1  Phage_Mu_F  Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> Phage_Mu_F  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.3e-07    0.0059      13     110 ..     164     274 ..     128     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.3e-07
  Phage_Mu_F  13 rGegeeelakelkkr.......gqlssrsrlrtiartetlraynaarlaq...eaaskevkkekwryvavkdsrtrpeHaaldGkvfkvddpfwqtga. 100
                 rG+  ++  ++++         g + ++sr+++ a+  +  a +aa++ +    +a+ +  k k ++  + d++t+p ++  d   + + +++++ g  
  EHT99933.1 164 RGDAPDQTVRNVRGTkarnwqdG-ALNKSRANASAIGYSTLA-HAAEVVReqtATANDHLIKAK-QWLSTLDNKTSPPCRIRDALTYTLHNQPIKHGIp 259
                 44444444444444477777744.458999999998877765.777776653344444444555.9***************************998888 PP

  Phage_Mu_F 101 .....ppedvnCRCr 110
                       + +++CR +
  EHT99933.1 260 wgdgpGRLHFHCRST 274
                 888866889999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2714.65
//
Query:       EHT99934.1  [L=470]
Description: hypothetical protein CKS_1965 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-43  146.2   0.3      1e-42  145.5   0.3    1.4  1  DUF4055   Domain of unknown function (DUF4055)


Domain annotation for each model (and alignments):
>> DUF4055  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.3   5.7e-47     1e-42       1     134 [.     250     388 ..     250     389 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 5.7e-47
     DUF4055   1 PLldLAelNikhyrsssdqedilhfarvpllvltGle.......eekelaiGsgsaielpdgaaakyveasgeaiaagkealdrlekqmaalGarllee 92 
                 PL+ LAe+N+ hyr+s+d+ed++ f+++ +++++Gl+       e++++++Gs+++++lp+++++ y++a+++++a  kea+d++++ m alGarl+e+
  EHT99934.1 250 PLAALAEINLGHYRNSADYEDSVWFCGQVQPWMSGLTtewrdhlEKSGVKVGSRNPLMLPKDGTFAYAQAQPNMLA--KEAMDSKRDYMVALGARLIEQ 346
                 9************************************6666666559*****************************..********************* PP

     DUF4055  93 ktateTatqaaieaeaenSvLallasnledaldqaLrwmaew 134
                 ++a +T+tqa+ e++a++S+L++++ n+++a+++aL+w+a++
  EHT99934.1 347 NSAVKTTTQASSEQSAATSLLSICVANVSEAYTRALNWCARY 388
                 *****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.34
# Mc/sec: 4084.78
//
Query:       EHT99935.1  [L=436]
Description: hypothetical protein CKS_1964 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-33  116.6   0.0    1.6e-33  116.2   0.0    1.2  1  Terminase_6   Terminase-like family
    8.5e-07   29.2   0.0    1.7e-06   28.2   0.0    1.5  1  Terminase_6C  Terminase RNaseH-like domain


Domain annotation for each model (and alignments):
>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.8e-37   1.6e-33       2     212 ..      25     239 ..      24     242 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 1.8e-37
                  EEE-SSS-HHHHHHHHHHHHHHSSSS.-EEEEEESSHHHHHHHHHHHHHHHHTS-T.TTS--EEEE-SSEEEE...TTS-EEEEES....SHHHHHTS CS
  Terminase_6   2 ilggrqsGKTfagarellrhalgrgprnqvflsasktqareeggqfekgigelake.ildiefeesaknlvvl...snGaslhflslesetaggiqGa 95 
                  +++g++sGKT++g+  +++  ++ ++ nq ++++++ q+r++   f+++++e+a +  +++e++es+k++++    +++++ +++s+e+  ++ i+G 
   EHT99935.1  25 YVAGFGSGKTWVGCGGICKEMWEHPRINQGYFAPTYPQIRDI---FYPTVEEVAFDwGMRVEINESNKEVHFYvgrQYRGTTICRSMEK--PQTIVGF 117
                  789***************************************...********************************************..8****** PP

                  --SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EE.....EEEE---SSSHHHHHHHHHHCTSS-EEEEE-GGGSG.B-TTSBB-TTHHHHHHHHHTS CS
  Terminase_6  96 qidliyfDElteipksqelekvtrlratkgtdtkt.....fattpptpdhgvydfvtgwldeegpqsvtkiqavve.vtiedakklgedlieeleaey 187
                  +i ++++DEl  +p+++   ++++ +a+ + +++       +tt+p+++++vy+++ ++++++  +s+t ++++v+ +t  + k+l +d+i++l+++y
   EHT99935.1 118 KIGNALIDELDVMPAKKAELAWRKIIARMRYKVPGlrngiDVTTTPEGFKFVYQQFVKAVRNK--PSLTTLYGLVQaSTFDNEKNLPPDYIPSLMESY 213
                  ****************************998888899999***********************..***********9999999*************** PP

                  -HHHHHHHHS---TT.CTCESSXCHH CS
  Terminase_6 188 sveerarllrGewid.tsgsiFqrse 212
                  + e ++++lrG +++ tsg+i+ +++
   EHT99935.1 214 PSELIKAYLRGLFTNlTSGTIYHQFD 239
                  **********************8876 PP

>> Terminase_6C  Terminase RNaseH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.9e-10   1.7e-06      44     153 ..     295     418 ..     257     420 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.9e-10
                   HHHHHHHH........CTTCEEEEECCSC.......HHHHHHHHHHCCT--S-SCEESSH..HHHHHHHHHHHHHH....HTTSEEEETHHCECCCC CS
  Terminase_6C  44 aaikklae........rynviyvyieits.......aGesvaellkrdlesealavkpepaskdkatrvskvkdli....esgrlkvdkgaecaksf 121
                   ++ik+ +         +  +iy+y ++ +       a +  +++l++++    + v +  a++++++r++++++++     ++r kv+   +c+ ++
    EHT99935.1 295 RIIKERFWlcdgddyrKVREIYIYPDASGdsrkssnASTTDIAQLRQAG----FHVIVDEANPPVKDRINAMNAMLcngnGERRYKVNVK-RCPVYT 386
                   4555555444555544667888888888899999999999*******99....9**********************99754445555554.****** PP

                   CCHCC-EEHCCHHCHCSGCCTCHHHHHHHHHH CS
  Terminase_6C 122 ealegfhtdlgaerstsaehdDlvdAlsyall 153
                   e le+++  +++e+++++++d+ +dA  y ++
    EHT99935.1 387 ESLEQQVWGDNGEPDKKSGNDHPNDAGGYYIV 418
                   **************************888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3212.66
//
Query:       EHT99936.1  [L=413]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-22   80.5   0.1    2.8e-22   79.0   0.0    1.7  2  DDE_3         DDE superfamily endonuclease
    2.8e-10   39.7   1.5    4.7e-09   35.8   0.1    3.0  3  HTH_23        Homeodomain-like domain
    6.2e-09   36.4   1.1    3.8e-08   33.8   0.3    2.6  2  HTH_32        Homeodomain-like domain
    5.8e-07   29.4   1.2    1.4e-06   28.2   0.3    2.0  2  HTH_29        Winged helix-turn helix
    2.4e-06   27.1   4.0    5.8e-06   25.9   0.3    2.9  3  HTH_33        Winged helix-turn helix
    2.1e-05   24.6   0.3    0.00027   21.0   0.2    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
       0.04   14.4   0.1      0.083   13.4   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.068   12.9   0.6        0.2   11.5   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.2e-25   2.8e-22       2     142 ..     177     316 ..     176     320 .. 0.96
   2 ?   -0.8   0.0      0.51   1.1e+03      91     135 ..     311     376 ..     309     382 .. 0.69

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.2e-25
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHT99936.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHT99936.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.51
       DDE_3  91 Hkseslrelveee...................adrlellyl..PpySPelNpiEivwsklkrellk 135
                 H++ s+++l+++                      ++++ yl    y+  l +iEi  ++l  e l+
  EHT99936.1 311 HQCSSMWQLLKKVhhfmntvspfpggnmgwlkCSGIRISYLaeSEYAQRLQQIEIERRQLEVEKLR 376
                 666666666666566666666666666666666788888997788999999999998888655555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   2.1e-12   4.7e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.4   0.0      0.13   2.9e+02      30      38 ..     128     136 ..     126     139 .. 0.88
   3 ?   -2.2   0.1       1.8     4e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.1e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHT99936.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHT99936.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.8
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHT99936.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.8   1.8e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   33.8   0.3   1.7e-11   3.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.8
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHT99936.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 1.7e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHT99936.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.3   6.3e-10   1.4e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.7   0.0       1.4   3.1e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 6.3e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHT99936.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHT99936.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.3   2.6e-09   5.8e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?    1.1   0.1      0.14   3.1e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -3.5   0.0       3.8   8.5e+03      25      33 ..     314     322 ..     312     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.6e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHT99936.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHT99936.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHT99936.1 314 SSMWQLLKK 322
                 689****96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.2e-07   0.00027       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.6   0.0      0.28   6.2e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHT99936.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHT99936.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.7e-05     0.083      12      68 ..      27      84 ..      18      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHT99936.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  6666666667777889**********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   8.8e-05       0.2      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.3   0.0       1.7   3.9e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.8e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHT99936.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHT99936.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3030.23
//
Query:       EHT99937.1  [L=223]
Description: hypothetical protein CKS_1962 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-27   96.0   0.9    3.5e-27   95.6   0.2    1.6  2  Terminase_2  Terminase small subunit
  ------ inclusion threshold ------
      0.058   14.5   0.6       0.19   12.9   0.1    2.0  2  Cytochrom_C  Cytochrome c


Domain annotation for each model (and alignments):
>> Terminase_2  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.54   4.8e+03     108     124 ..      42      58 ..      23      70 .. 0.61
   2 !   95.6   0.2   3.9e-31   3.5e-27       1      84 [.      76     159 ..      76     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.54
  Terminase_2 108 gvkvklkDklkAlella 124
                  ++k+++++++k++++ +
   EHT99937.1  42 VKKPSAQSTQKNAQKRL 58 
                  55555555555555444 PP

  == domain 2  score: 95.6 bits;  conditional E-value: 3.9e-31
  Terminase_2   1 LTpKqkrFvdeYikdlNatqAaikAgyskktArsigselLrkpkIkkaIreakaereertiieadeVlqellkiaraeitdeve 84 
                  LT++q++Fv eY+kd NatqAa++Agyskk+A++ig++lL+k+ +++ I++++++   rt  +adeVl++ +++a+++ +++ +
   EHT99937.1  76 LTDQQRLFVAEYLKDSNATQAALRAGYSKKSAEQIGYQLLQKTSVAQSIAQQQKASIMRTLGSADEVLEKAWQLATFDANEISQ 159
                  9*******************************************************************************9987 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.1e-05      0.19      29      90 ..      24      90 ..      14      92 .. 0.85
   2 ?   -0.0   0.1      0.23     2e+03      35      65 ..     102     127 ..      90     192 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
                 --HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG......TT--HHHHHHHHHHHHT CS
  Cytochrom_C 29 ptlsgaaerasaasigasvanpaavsaprddfekkkltaempark.....erlteqeiadlaaYLks 90
                 p+ + +a+  ++ s +++v++p a+s +++++++      ++  +     ++lt+q++  +a+YLk+
   EHT99937.1 24 PKDWCEAQGLNYVSARRYVKKPSAQSTQKNAQKRLRTAHTDKCAEklihgNGLTDQQRLFVAEYLKD 90
                 555667778899999*************999999998877777669*******************97 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.23
                  HHHTTT-HHHHHHHHTTSS--SSSHHHHHHH CS
  Cytochrom_C  35 aerasaasigasvanpaavsaprddfekkkl 65 
                  ++++sa++ig +   +  v ++       + 
   EHT99937.1 102 YSKKSAEQIGYQLLQKTSVAQSIA-----QQ 127
                  444444444444444433333321.....11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1752.42
//
Query:       EHT99938.1  [L=205]
Description: hypothetical protein CKS_1961 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   12.0   0.1        2.5    7.9   0.1    2.3  2  PDR_assoc  Plant PDR ABC transporter associated


Domain annotation for each model (and alignments):
>> PDR_assoc  Plant PDR ABC transporter associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.016   2.8e+02      11      26 ..      90     105 ..      81     108 .. 0.81
   2 ?    7.9   0.1   0.00014       2.5      14      32 ..     147     166 ..     145     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.016
   PDR_assoc  11 etlGvavLksrglfte 26 
                 ++ Gv  Lk+rgl  +
  EHT99938.1  90 NPAGVDWLKQRGLWAD 105
                 6789********9776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00014
   PDR_assoc  14 GvavLksrglf.teaywYWi 32 
                 G a+Lksr +  te  wYW 
  EHT99938.1 147 GDAILKSRHFRkTEHIWYWT 166
                 899*******637778***6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1637.75
//
Query:       EHT99939.1  [L=276]
Description: hypothetical protein CKS_1960 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 2585.88
//
Query:       EHT99940.1  [L=178]
Description: hypothetical protein CKS_1959 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-06   26.7   0.1    0.00029   20.6   0.0    2.2  2  MAF_flag10  Protein of unknown function DUF115


Domain annotation for each model (and alignments):
>> MAF_flag10  Protein of unknown function DUF115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0018        33      27      59 ..       3      34 ..       1      38 [. 0.75
   2 !   20.6   0.0   1.6e-08   0.00029     140     168 ..      88     116 ..      63     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0018
  MAF_flag10 27 paiivgaGPSLeknlellkelrdkaviiaadta 59
                 +i +++GPSL  +   l  +++   +ia++++
  EHT99940.1  3 SVICIASGPSLTRSDCDLA-VNSVHPVIAVNSS 34
                57899******98877774.5567777777776 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.6e-08
  MAF_flag10 140 GgsvantaldlAvklgfkeIiliGqDlay 168
                 +++ +++a++lAv+lg+++Iil+G D++ 
  EHT99940.1  88 SFNSGQRAIQLAVHLGAERIILLGYDCSL 116
                 677899********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1672.30
//
Query:       EHT99941.1  [L=75]
Description: hypothetical protein CKS_1958 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-21   74.5   3.4    5.9e-21   74.3   3.4    1.1  1  DUF826    Protein of unknown function (DUF826)


Domain annotation for each model (and alignments):
>> DUF826  Protein of unknown function (DUF826)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   3.4   3.3e-25   5.9e-21       1      52 [.      18      69 ..      18      75 .] 0.96

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 3.3e-25
      DUF826  1 msEIkslVtedlVKeaLrSeeVrkalKaklrkdlesqiDaeVDavLaeLlGv 52
                m+E+k++Vt+ lVK+aL+S+ V  alK++++ dl++qiD++VD++La++lG 
  EHT99941.1 18 MAEVKDIVTDTLVKNALKSDAVTTALKTQIKADLDTQIDSAVDTALADILGH 69
                9**************************************************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 621.30
//
Query:       EHT99942.1  [L=57]
Description: hypothetical protein CKS_1957 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-06   26.6   0.0    5.6e-06   26.6   0.0    1.1  1  DUF2778   Protein of unknown function (DUF2778)
  ------ inclusion threshold ------
      0.088   13.2   0.1      0.095   13.1   0.1    1.1  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> DUF2778  Protein of unknown function (DUF2778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   6.2e-10   5.6e-06      68     102 ..       8      44 ..       1      54 [. 0.80

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.2e-10
     DUF2778  68 eiegvkRggfrlHpl.l.gpsgeSeGCitlkensdfe 102
                  + +++R+gf++H++    p ++S+GCi++  n + +
  EHT99942.1   8 SNIMYGRSGFLIHGDsTaHPGEASNGCIIMPLNVRHS 44 
                 5569**********9866899********98877655 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.1e-05     0.095      93     126 ..      10      37 ..       4      47 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                 EE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE CS
        YkuD  93 vfpngsgiyiHgtgapdlfergkgarrShGCirl 126
                 +++  sg+ iHg ++ +         +S+GCi +
  EHT99942.1  10 IMYGRSGFLIHGDSTAHP------GEASNGCIIM 37 
                 677899*****6666644......478*****88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       116  (0.00646996); expected 358.6 (0.02)
Passed bias filter:                      114  (0.00635841); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 469.30
//
Query:       EHT99943.1  [L=155]
Description: hypothetical protein CKS_1956 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-22   80.1   5.0    1.9e-22   79.7   5.0    1.1  1  Phage_lysis  Bacteriophage Rz lysis protein
  ------ inclusion threshold ------
      0.017   15.6   0.2      0.032   14.7   0.2    1.5  1  LPAM_1       Prokaryotic membrane lipoprotein lipid attachmen
       0.67   10.1   4.1        9.8    6.4   4.1    2.0  1  Fib_alpha    Fibrinogen alpha/beta chain family
        2.7    8.5   5.2        5.3    7.6   0.6    2.2  2  NPV_P10      Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Phage_lysis  Bacteriophage Rz lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   5.0   4.2e-26   1.9e-22      14     124 ..      39     150 ..      25     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 4.2e-26
  Phage_lysis  14 aelraakaeieelqtrqravaeldakhtkeLadaksendrlradvaaGrrrLrinatcaa.gvpkatsaasvddaasarLadaaerdyftLreridev 110
                  +  r++ ++i+++q+rq+++a+ld  ht+ L  a s+nd+l + +a+G+rr+ ++a c+  g+++a+ + s++ aa+   +    ++++++r+ i   
   EHT99943.1  39 QITRQQFDTITDIQERQQKLAALDKTHTEALSAAESQNDALSRQLADGTRRMYVHAKCPVsGTGSASATRSLGYAAAVEFSSDSRQNILDIRAGIISD 136
                  3345666*****************************************************9************************************* PP

  Phage_lysis 111 eeqlkglQdyiraq 124
                  ++++++lQdyir++
   EHT99943.1 137 QQKISYLQDYIRQI 150
                  ************86 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   7.2e-06     0.032       1      15 [.       1      15 [.       1      15 [. 0.98

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.2e-06
      LPAM_1  1 MKKillalgalllLs 15
                M K+l+a++a+++Ls
  EHT99943.1  1 MNKYLIAALAVAVLS 15
                9*************8 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.1    0.0022       9.8      77     114 ..     113     150 ..      35     153 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH CS
   Fib_alpha  77 nvikksskeleeeilrlketidaqesnirvLqnvlesn 114
                  +  ++s++ +++il++++ i++  ++i +Lq+ +++ 
  EHT99943.1 113 AAAVEFSSDSRQNILDIRAGIISDQQKISYLQDYIRQI 150
                 455678889999*********************99986 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.033   1.5e+02      11      50 ..      49      82 ..      43      89 .. 0.59
   2 ?    7.6   0.6    0.0012       5.3       2      33 ..     122     153 ..     122     155 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.033
     NPV_P10 11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaq 50
                +di++ ++k+ al++  ++  +  +       + da+s q
  EHT99943.1 49 TDIQERQQKLAALDKTHTEALSAAES------QNDALSRQ 82
                57888888888887765443332222......23444444 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
     NPV_P10   2 S.qniLlvIradikavddkVdalqqqvddvqen 33 
                 S qniL  Ira i   ++k++ lq+ + ++ +n
  EHT99943.1 122 SrQNIL-DIRAGIISDQQKISYLQDYIRQIVTN 153
                 669997.7********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1258  (0.0701657); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1298.03
//
Query:       EHT99944.1  [L=206]
Description: putative endolysin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-08   32.6   1.8      1e-06   28.8   0.7    2.7  2  Glyco_hydro_19   Chitinase class I
  ------ inclusion threshold ------
      0.083   12.9   0.0          1    9.4   0.0    2.3  2  Collagen_bind_2  Putative collagen-binding domain of a collag


Domain annotation for each model (and alignments):
>> Glyco_hydro_19  Chitinase class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.7   1.2e-10     1e-06     102     156 ..     113     166 ..      17     175 .. 0.85
   2 ?   -0.8   0.0      0.13   1.1e+03     189     208 ..     178     197 ..     171     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.2e-10
  Glyco_hydro_19 102 aagkkyyGrGpiqlsynynygeaGqaiGqdllnnpdlvatdavvsfktalwfwmt 156
                     + g +y GrG iq++ + ny ++G  +G+dll  p+l+ +d   + ++a wf+ +
      EHT99944.1 113 NDGWNYRGRGLIQITGHDNYRDCGAGLGADLLLIPQLLEQDEYAA-RSAAWFYAS 166
                     56779************************************9765.677799865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.13
  Glyco_hydro_19 189 vitniingglecgkgedtrv 208
                      it iingg +  +++++r 
      EHT99944.1 178 AITKIINGGANGLEDRKARY 197
                     69*******99888887765 PP

>> Collagen_bind_2  Putative collagen-binding domain of a collagenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00012         1      47      79 ..      14      46 ..       5      52 .. 0.83
   2 ?    0.7   0.0      0.06   5.3e+02      49      69 ..     158     178 ..     150     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
  Collagen_bind_2 47 kkvkasWfdPrtGeltkigevenkgvqeftpps 79
                     ++++a+Wf+P + ++t++g  +++++ +f ++ 
       EHT99944.1 14 AELAARWFQPIDAAMTEFGITSADDQAKFIAQV 46
                     5679***************99999999998774 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.06
  Collagen_bind_2  49 vkasWfdPrtGeltkigeven 69 
                       +a+Wf  ++G l++ g++e+
       EHT99944.1 158 RSAAWFYASKGCLKHGGDIEA 178
                      5799*******9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1446.05
//
Query:       EHT99945.1  [L=43]
Description: hypothetical protein CKS_1954 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-05   23.2   0.1    7.5e-05   23.1   0.1    1.0  1  Phage_holin_3_1  Phage holin family (Lysis protein S)


Domain annotation for each model (and alignments):
>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.2e-09   7.5e-05      66      99 .]       1      34 [.       1      34 [. 0.92

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.2e-09
  Phage_holin_3_1 66 lglpaslavviggliGflGvekirelakkllekk 99
                     +glpa+   ++gg+iGf+G + +r+ a  l++k+
       EHT99945.1  1 MGLPANSGAFVGGMIGFIGADRMRDSAVALFTKR 34
                     6899999******************999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 332.72
//
Query:       EHT99946.1  [L=389]
Description: hypothetical protein CKS_1952 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-14   51.6   0.0    1.7e-13   50.8   0.0    1.4  1  Phage_integrase  Phage integrase family
    2.3e-13   50.3   0.1    4.3e-13   49.4   0.1    1.4  1  Arm-DNA-bind_3   Arm DNA-binding domain
    2.6e-05   24.4   0.7    9.3e-05   22.6   0.1    2.2  2  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   2.8e-17   1.7e-13       2     169 ..     202     364 ..     201     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.8e-17
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeks 94 
                      vlt +e+ ++  ale+ +    +k+l ++l+  G+R sEl+  +  ++++++ +++ +++++K++  +  p+ e++ +++++ll+ +      +
       EHT99946.1 202 VLTYNELAKIWLALENnKVFSSNKILHQMLLLWGARLSELRLSTPAEFNMDDLIWTTPAEHSKMGNIIRRPIFEQIQPYVERLLAMK------N 289
                      7999999999999999766779999**************98888888***************************************9......9 PP

                      SBSSBET.TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase  95 ellfask.rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                       ++f+ +  +  + r++ + ++++++ + +i  ++++H++R+++ t+L e+g+ ++v +k+lGH+      +Y+++
       EHT99946.1 290 PVMFPGQeLDTAIDRSSCNLYMRKLRSKIDIP-EWRTHDFRRTLVTNLSEEGILPHVTEKMLGHELGGVMAVYNKH 364
                      9****9978999****************9998.********************************99999999876 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   7.2e-17   4.3e-13       1      68 [.       3      84 ..       3      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 7.2e-17
  Arm-DNA-bind_3  1 LTdkaikaladsdkklprd.........GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPa 68
                    L+d+++++++     +p++         GL  r+tp+G+  f++ryr         lGrypa+sl+eAR +  e+ral  +G++P+
      EHT99946.1  3 LSDTKLRSIN---G-KPYSgpaevtdadGLSARITPNGTIAFQYRYRwqnkpvritLGRYPAMSLKEARVAVGEMRALYMKGVNPK 84
                    7899999977...2.3332245567788************************99766****************************8 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   1.6e-08   9.3e-05       1      45 [.      95     139 ..      95     149 .. 0.95
   2 ?   -2.0   0.0      0.74   4.4e+03       1      11 [.     204     214 ..     204     219 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.6e-08
                      ..HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG- CS
  Phage_int_SAM_3   1 tFsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkI 45 
                      t+++ l+eW++ y + +ke+T+  yks++ n +   F++ ++ +I
       EHT99946.1  95 TLQDCLDEWWNKYVTGLKENTRILYKSVVYNTMYTQFKDVPVANI 139
                      899**************************************9998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.74
                      ..HHHHHHHHH CS
  Phage_int_SAM_3   1 tFsefleeWle 11 
                      t +e++++Wl+
       EHT99946.1 204 TYNELAKIWLA 214
                      6789*****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3096.54
//
Query:       EHT99947.1  [L=385]
Description: putative prophage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-32  112.5   0.0    2.8e-32  111.9   0.0    1.3  1  Phage_integrase  Phage integrase family
    3.2e-19   69.1   0.2    7.4e-19   67.9   0.2    1.6  1  Arm-DNA-bind_3   Arm DNA-binding domain
    1.4e-05   25.2   0.0    2.7e-05   24.3   0.0    1.4  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   4.6e-36   2.8e-32       2     170 ..     199     364 ..     198     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 4.6e-36
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeks 94 
                      +l +d+v ++++al   s +i +k ++++l  t+lR++El+s+r++d+d++ g i+++e+++K++k ++vp+s++++ellk+l  ++   ++ s
       EHT99947.1 199 FLPADQVPAFNQALAGySGSIVSKVATMVLQYTALRTKELRSMRWSDVDFATGLITIDESVMKSRKPHIVPMSRQVTELLKTLKPVT---EPVS 289
                      6899******************************************************************************99999...**** PP

                      SBSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase  95 ellfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthva 170
                      +++fa +  ++k +s+++v  +++++++e g+    ++H +Rh+f+t L e++++ +++++ l+H++  ++  iY+h++
       EHT99947.1 290 QFVFAGRndKRKSISENAVLLVIRQIGYE-GLA---SGHGFRHQFSTILHEHEWPSEAIERQLAHTDKHSVrGIYNHAQ 364
                      *******99999*****************.777...9**********************************99****87 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.2   1.2e-22   7.4e-19       1      73 [.       2      86 ..       2      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.2e-22
  Arm-DNA-bind_3  1 LTdkaikaladsdkklprd.....GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    LT k i+a++++d  +p++     GL+l++ +sG+k+++lr++         +G+yp vsl+eAR+ka ++r+++a+GiDP+  kk+
      EHT99947.1  2 LTVKPIEAAKPKD--KPYRlldsnGLYLYIPASGKKVWQLRFKldgkekiltVGKYPHVSLQEARDKAWQARKDVADGIDPVRTKKR 86
                    7999999*88888..45545779*******999****************8655*****************************99986 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.5e-09   2.7e-05       2      48 ..      93     139 ..      92     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.5e-09
                      .HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HH CS
  Phage_int_SAM_3   2 FsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpa 48 
                      Fs  ++eW++++++ ++e +    ++++++ IlP +g + +++I+p 
       EHT99947.1  93 FSVIYKEWYAHKRQVWSEGYATELQRMFETDILPLIGAMEMDEIEPM 139
                      7889*****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2947.99
//
Query:       EHT99948.1  [L=79]
Description: hypothetical protein CKS_1949 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-22   80.7   2.3    1.1e-22   80.6   2.3    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   2.3   5.9e-27   1.1e-22      55     129 ..       3      77 ..       1      78 [. 0.96

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 5.9e-27
   Caudo_TAP  55 wvedkkeeqiqqAeqekqqllaqAseqiaplqdavdlgiatdeEkaaLlawkkYrvlLnrvDvslapdieWPeqP 129
                 ++++++++ +++A+q+kq+ll++A e +++++++++lgi+ de+k  L++w++Y +++++vD+s+apdi+WP+ P
  EHT99948.1   3 DTDAQHAADVEAANQQKQALLDNAAEVTSDWKTELALGIIGDEDKVSLIEWMNYTKAVKAVDTSTAPDITWPTPP 77 
                 56777999*****************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 612.79
//
Query:       EHT99949.1  [L=261]
Description: putative tail fiber protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.042   13.9   0.0    1.7  1  Collar    Phage Tail Collar Domain


Domain annotation for each model (and alignments):
>> Collar  Phage Tail Collar Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-06     0.042       8      35 ..     115     142 ..      99     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-06
                 SSS-SSTEEESBS-B--TTT-HHHHHHC CS
      Collar   8 gnlapaGWllcdGqslsisqypaLfali 35 
                 +++a + +l+ +G+++s+++yp+L+ +i
  EHT99949.1 115 TEWADMVFLKFNGATFSATTYPKLALVI 142
                 34445669****************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2119.41
//
Query:       EHT99950.1  [L=226]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-50  171.7   0.4    1.1e-47  162.3   0.0    2.0  2  DUF2612   Protein of unknown function (DUF2612)


Domain annotation for each model (and alignments):
>> DUF2612  Protein of unknown function (DUF2612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0   6.2e-52   1.1e-47       1     177 [.       4     185 ..       4     188 .. 0.94
   2 !    8.0   0.1   0.00014       2.5      63      87 ..     195     223 ..     190     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 6.2e-52
     DUF2612   1 ylqlilsqyankpklvalvealnqplsdaafiadfladvfdldtAegkgLDvwGrivgvsrvltvplskkyfgFdeaglgFdqgsfkrrsdsttgltsL 99 
                 y++li+ ++a kp + +++++ ++pl d + +++ l  +fd+dtA+g +LD++G ++g+sr ++ p++++yf++d++glg+dqg++++++d+++g+tsL
  EHT99950.1   4 YTELITNYHATKPLFFDHIDLSTRPLIDVSSTMSGLVTAFDIDTAVGVQLDTLGLWIGRSRIVSQPITGVYFSWDTEGLGYDQGVWQGPYDPDSGYTSL 102
                 789************************************************************************************************ PP

     DUF2612 100 ddetyRklirakilaniwdgtvpninailrslfad.ggrvfvlDngdmtmtvyvf.efqptav...elaiiensdllprpaGV 177
                 +d+tyR +++aki+ n+wdg   ++  il++  a+ g ++ ++Dn+dmt++v+vf e+ + +v   ++a+i++++l +++aGV
  EHT99950.1 103 SDDTYRIILKAKIAINNWDGRNDSLPPILDAATAGsGLKMQIVDNQDMTISVWVFpETDIADVsleLIAAIKQGYLTVKAAGV 185
                 **********************************99*****************9944556665111567889**********9 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00014
     DUF2612  63 ltvplsk.kyfgFdeag...lgFdqgsfk 87 
                 +++p ++ k+fgFd ++   +gFd g + 
  EHT99950.1 195 VETPSEGsKFFGFDMDNeyiAGFDVGAWG 223
                 6677777799******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1820.28
//
Query:       EHT99951.1  [L=397]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-13   49.7   8.2    4.9e-13   48.8   8.2    1.4  1  Baseplate_J    Baseplate J-like protein
  ------ inclusion threshold ------
       0.19   12.4   0.0        3.5    8.3   0.0    2.3  2  Lumazine_bd_2  Putative lumazine-binding


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   8.2   5.5e-17   4.9e-13       5     252 ..      84     340 ..      80     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 5.5e-17
  Baseplate_J   5 LdrlgelevgvtRkpAtkAsgtvtftgeagtvIpaGtrvstadglsfattedtitagqgsatvkvtaeeaGaagNvpagtsllldtaiagiqsvavan 102
                  L + +++  g+tRk At ++  +  tg+agt+I +G+     +g+ + + + +++  +g++ v+ t+  +G+ +   agt++++ t++ g +sv++ +
   EHT99951.1  84 LSSNVKI-NGITRKVATNSTADLLLTGTAGTTITNGSARDK-NGIIWNFPASVAIGVDGTVLVTGTCANSGSVAA-MAGTITTINTPTRGWVSVTNPA 178
                  6667778.4***************************98887.******************************996.8999*************99999 PP

  Baseplate_J 103 tkvssgGadiEsdealreRillalqepptgGnkadYkewalevqgVtrakvlplwngpGtVkvvilldngglPtaellakVqayi....segl..... 191
                  +   + G  +E+d++lr R  +++  p+   + +    ++ +v+gVtr k ++++ g+   + ++  +   + ++ ++++++++i       +     
   EHT99951.1 179 AA--TVGSPAETDAELRIRQDQSVALPSI-TPFEGVDGAIANVAGVTRHKLYENDTGATDSNGLPPHSISAIVDGGDVTEIAQTIrgnkG--Qgtaty 271
                  77..*****************99966655.888899999***************99888877777777778**************65430..266667 PP

  Baseplate_J 192 ............rPvtaevtvlaptekavnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqi 252
                               P    ++ ++ +++ v+i+++++  +g++ +++ +++++a+++y+  ++  g++++ls+i
   EHT99951.1 272 gktsvtvpdtygNPHVISFSRSTDVPIYVAISLKVF--TGYT-SQIGEQIKQAVADYINGLTI-GDDVLLSRI 340
                  778889888888999999999999999999999963..4777.88999************777.*******99 PP

>> Lumazine_bd_2  Putative lumazine-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.046   4.1e+02       2      22 ..      21      41 ..      20      99 .. 0.91
   2 ?    8.3   0.0   0.00039       3.5       4      51 ..     316     362 ..     314     379 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.046
                   HHHHHHHHHHHHHHHHHHT-H CS
  Lumazine_bd_2  2 diaaieavledYfdglaegda 22
                   d+++i ++l+ Yf+ ++ +da
     EHT99951.1 21 DYQTILDTLTSYFRQIYGSDA 41
                   7899**********9999886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00039
                    HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEECTCEEEEEECHHH CS
  Lumazine_bd_2   4 aaieavledYfdglaegdaaklrkafhpdaalvgvtkgelremsleel 51 
                    ++i++++ dY++gl+ gd   l+++  p      v +g+ r  ++ el
     EHT99951.1 316 EQIKQAVADYINGLTIGDDVLLSRIYSPANLG-VVSGGNARYYDITEL 362
                    689********************998885443.455556666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2952.87
//
Query:       EHT99952.1  [L=117]
Description: hypothetical protein CKS_1945 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 983.38
//
Query:       EHT99953.1  [L=246]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-42  141.1   0.4    5.3e-41  138.7   0.1    2.3  2  Gp138_N   Phage protein Gp138 N-terminal domain


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.1   2.9e-45   5.3e-41       1      98 []      31     127 ..      31     127 .. 0.97
   2 ?   -0.8   0.0     0.091   1.6e+03      47      62 ..     212     227 ..     207     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 2.9e-45
     Gp138_N   1 lPgkivsfdpaavtatvqpaikkklsdgetvelpllvdvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlhdlsdafaivG 98 
                 +Pg+i+sfdp++vt+tv++a++    dg+t el +lvdvpv+fprggg+tltfpvk+Gdecl++f++r+id+w+qsGgvqe++d r+hdlsdafaivG
  EHT99953.1  31 MPGIIQSFDPDSVTCTVEVALRGVVGDGST-ELKPLVDVPVIFPRGGGCTLTFPVKEGDECLLIFADRCIDFWWQSGGVQETVDPRQHDLSDAFAIVG 127
                 8**************************876.677799************************************************************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.091
     Gp138_N  47 ggvtltfpvkaGdecl 62 
                 g vt+t +vkaG + l
  EHT99953.1 212 GPVTVTNDVKAGGKSL 227
                 7789999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 2303.03
//
Query:       EHT99954.1  [L=354]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2850.68
//
Query:       EHT99955.1  [L=101]
Description: hypothetical protein CKS_1942 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 815.04
//
Query:       EHT99956.1  [L=200]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   12.7   0.0       0.16   11.6   0.0    1.5  1  DUF3236   Protein of unknown function (DUF3236)


Domain annotation for each model (and alignments):
>> DUF3236  Protein of unknown function (DUF3236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.2e-06      0.16     103     133 ..      67      97 ..      64     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.2e-06
                 SSTTS-EEEEEEETTS-EEEEEEE--TTTS- CS
     DUF3236 103 GvpGsGsllvildekgriltaalsPshvihk 133
                 G +G Gsll ++d+ +  l+a+lsP +++++
  EHT99956.1  67 GFAGGGSLLDFIDTSSIGLSAGLSPKETYQQ 97 
                 899**********************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1779.44
//
Query:       EHT99957.1  [L=693]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-23   83.2   0.1    2.7e-23   81.8   0.1    1.8  1  SLT              Transglycosylase SLT domain
    6.8e-05   22.8   3.8    6.8e-05   22.8   3.8    3.6  3  PhageMin_Tail    Phage-related minor tail protein
  ------ inclusion threshold ------
      0.014   16.0   0.1      0.039   14.6   0.1    1.8  1  Transglycosylas  Transglycosylase-like domain
      0.015   14.8   0.0      0.025   14.0   0.0    1.4  1  Pho86            Inorganic phosphate transporter Pho86
       0.11   12.2   0.0       0.23   11.2   0.0    1.5  1  Lysozyme_like    Lysozyme-like


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.1   7.7e-27   2.7e-23       2     106 ..     527     627 ..     526     638 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 7.7e-27
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHH CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegt 100
                 +++k e+ y+++  ll+ +a +ESg+n  A+s++ga GL+Q+m+ ta+++gl      ++++dPek+++a+akyL++l++q +g+l +ala+YN G g+
  EHT99957.1 527 MFNKLESLYQLPAGLLKSVAITESGGNQFAMSGAGAKGLFQFMDGTARDMGL----RGNDVFDPEKSAQAAAKYLSQLLRQNGGDLSKALASYNWGIGN 621
                 67889999*****************************************999....699**************************************** PP

                 HHHTTH CS
         SLT 101 vkkakk 106
                 v+++  
  EHT99957.1 622 VQRYGM 627
                 *99865 PP

>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   3.8   1.9e-08   6.8e-05      74     191 ..      37     155 ..      15     162 .. 0.84
   2 ?    1.5   2.7     0.062   2.2e+02     122     157 ..     184     222 ..     157     303 .. 0.68
   3 ?    1.0   0.3     0.088   3.2e+02      81     134 ..     547     611 ..     513     642 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.9e-08
  PhageMin_Tail  74 daeeaaDvlaaaanngatsvedlaealkevgavakaaGlsfeetaaalallaaagikgseAgtalknllsrl.tk.eaaealkklGistkdaqgkm 167
                    ++ +++ v+ +aa +     +++a++l ++  + +  G s +   a+ ++ +++g +++ A  +l  l   + ++  a+  l+ lG++t+da+gkm
     EHT99957.1  37 NVLKVGAVVEGAALSIVGFTTQIANGLDKIYWASQRTGASVQGIKALGYAASQTGASAESAMSSLEGLAGFMrSNpGAEGFLNRLGVQTRDASGKM 132
                    666777777777778888889999999999999999*******************************99999744699999999************ PP

  PhageMin_Tail 168 ksldeiledlsealkkltdaqraa 191
                    ++++ i+  + ++l++++   ra+
     EHT99957.1 133 RDTTAIFTGVGQKLNNMPYY-RAK 155
                    *****************544.333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.062
  PhageMin_Tail 122 allaaagikgseAgtalknllsrl...tkeaaealkklG 157
                    ++l+++g ++++A+ + +++++++   t       +k+G
     EHT99957.1 184 SMLQKTGFNADKAAVQSNKFMTSMrglTSLFGIMRDKIG 222
                    344447788888888888888888554444444444444 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.088
  PhageMin_Tail  81 vlaaaanngatsvedlaealkevgavakaaGlsfee..........taaalallaa.agikgseA 134
                    +   ++n++a s+++ +  ++ + ++a+ +Gl +++          +a  l++l   +g + s+A
     EHT99957.1 547 ITESGGNQFAMSGAGAKGLFQFMDGTARDMGLRGNDvfdpeksaqaAAKYLSQLLRqNGGDLSKA 611
                    55567888888888888888888888999998888877777775443333333333244444444 PP

>> Transglycosylas  Transglycosylase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.1e-05     0.039       7      45 ..     542     580 ..     539     607 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                      HHHHHHHHHSS-TT-TTSSSEBTTTTBEHHHHHHTTCCS CS
  Transglycosylas   7 wdaiAqcEsggnwaintgnGyyGglqfsqstWeavggek 45 
                      ++ +A  Esggn  + +g G+ G +qf   t + +g  +
       EHT99957.1 542 LKSVAITESGGNQFAMSGAGAKGLFQFMDGTARDMGLRG 580
                      5789**************************999888554 PP

>> Pho86  Inorganic phosphate transporter Pho86
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     7e-06     0.025     212     286 ..     142     220 ..     138     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7e-06
       Pho86 212 iledLidwallrtrellkeykkkkkgssikllidvYSfDkelkktLkkkgFklissakleenrl......lgklfgikrel 286
                 + ++L +  ++r+++ ++     ++++ + +   + Sf  +++++L+k+gF++ +   ++ n++      l +lfgi r+ 
  EHT99957.1 142 VGQKLNNMPYYRAKQYAQMLGI-DENTLMAMRRGMNSFTADYQSMLQKTGFNADKA-AVQSNKFmtsmrgLTSLFGIMRDK 220
                 5566777788999999999885.4889999999*******************9776.9999999999999*******9985 PP

>> Lysozyme_like  Lysozyme-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.3e-05      0.23      51      97 ..     578     621 ..     540     627 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.3e-05
  Lysozyme_like  51 lkeneikdpeeSikqGvkylaealekakekgvdletavQaYNfGkgY 97 
                    l  n + dpe+S +++ kyl+++l++    g dl+ a+ +YN+G g 
     EHT99957.1 578 LRGNDVFDPEKSAQAAAKYLSQLLRQN---GGDLSKALASYNWGIGN 621
                    4579999*****************875...69************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5055.98
//
Query:       EHT99958.1  [L=141]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1145.87
//
Query:       EHT99959.1  [L=146]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-69  231.3   2.4    3.6e-69  231.2   2.4    1.0  1  DUF3277   Protein of unknown function (DUF3277)


Domain annotation for each model (and alignments):
>> DUF3277  Protein of unknown function (DUF3277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.2   2.4     2e-73   3.6e-69       1     144 []       1     144 [.       1     144 [. 1.00

  Alignments for each domain:
  == domain 1  score: 231.2 bits;  conditional E-value: 2e-73
     DUF3277   1 latYsFldvsativgpggsfslgsgagvaeeGitvsksedkntmtvgaDGevmhslhagksGtitirllktspvnkkLqalynaqslssaewgsnviti 99 
                 +atYsFldv+a+++gp+g+++lg+g++++eeGit ++ ++kntmt+gaDGevmhslha+ksGtit++llktspvnkkL+ +ynaqs+ssa+wg+nvi+i
  EHT99959.1   1 MATYSFLDVTASLTGPTGVIDLGQGSANSEEGITQTMGGNKNTMTIGADGEVMHSLHADKSGTITVTLLKTSPVNKKLSLAYNAQSQSSATWGNNVIVI 99 
                 9************************************************************************************************** PP

     DUF3277 100 rntaagdvivarsvafrkePdevyakegnrveWvfdcvkidellG 144
                 rnta+gd+ +ars+af+k+Pd ++akeg++v+Wvfdc+kid+llG
  EHT99959.1 100 RNTASGDISTARSCAFQKQPDFNNAKEGGTVAWVFDCGKIDQLLG 144
                 *******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1186.49
//
Query:       EHT99960.1  [L=386]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-125  418.2  15.0     6e-100  335.5  13.2    2.0  2  DUF3383   Protein of unknown function (DUF3383)


Domain annotation for each model (and alignments):
>> DUF3383  Protein of unknown function (DUF3383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   4.4e-28     8e-24       1      84 [.       7      92 ..       7      94 .. 0.95
   2 !  335.5  13.2  3.4e-104    6e-100     191     478 .]      91     384 ..      87     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 4.4e-28
     DUF3383  1 vsrivnvtvsviaaaaqardLnalll..stnvidpkervrsyssaadVaadfGtaspeyqaAqlyFnqspkpkeLliarwaktaaa 84
                vs++vnv v ++++aa++r+++all+  s+ vi  +ervr y+s +d+++dfG +spey+aAq++F+qspkp++++++rwakt ++
  EHT99960.1  7 VSNVVNVDVIISPKAATGRNFGALLIlgSSTVIPVQERVRLYASVEDIGEDFGVDSPEYEAAQVFFSQSPKPTQVYVGRWAKTLTS 92
                79**************************666**************************************************99654 PP

  == domain 2  score: 335.5 bits;  conditional E-value: 3.4e-104
     DUF3383 191 aasagaaaetpaeavaaleavsnnwygltf......adaaltddqllavAawieaqnkkylygattqeaaaldatnttdlasklkalaykrtvlqysst 283
                 + s+g + et+ +av+a+ ++ +nwygl +        + l++d++ +vA++iea++  +++g+t+ +a+ ++ t+ttd+asklka +y rt++qys++
  EHT99960.1  91 TSSEGGSVETIVQAVNACLQY-TNWYGLVVaddvvaGGDVLDADDVIEVAKLIEASSLSRIFGVTSGDAEIISTTSTTDVASKLKAGKYARTFIQYSTS 188
                 669999***********9886.68******8998886788999******************************************************** PP

     DUF3383 284 dpyaaasalgraasvnFnannttitlkFkqepgitaevltstqadaldaknyNyYgnynnntailqeGvlsggkfiDeianedWLknaiqkavfnlLlt 382
                 +pyaa+sa+gra++vnFn+ nttitlkFkqep +t e+lt  qa+a+dakn+N++++y+n+tailq+Gv+++g+f+De +++dWL+n++q++++nlL+t
  EHT99960.1 189 SPYAAVSAFGRAFTVNFNGSNTTITLKFKQEPSVTYETLTVGQAAAVDAKNANVFVYYANDTAILQQGVMANGDFFDERHGLDWLQNYVQTNLYNLLYT 287
                 *************************************************************************************************** PP

     DUF3383 383 sptkiPqtdaGealiaaaiedvidqavnnGliapGvwnsagf.aLsagqkltkGYyvyappiasqsqadreaRksvpiqlaykeagaihsvdisvnv 478
                 s+tkiPqtdaG ++++ ++e+++dq v+nGl+a+Gvwn+ ++ +L++g++ltkGYyvya+p  +q+qadreaRk++ iq+a+k+aga+h +d+ +nv
  EHT99960.1 288 STTKIPQTDAGVTRLLSNVEQSMDQSVTNGLVAAGVWNGGPIgQLNSGDTLTKGYYVYAQPLVQQAQADREARKAPLIQVACKLAGAVHYADVQINV 384
                 **********************************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3123.82
//
Query:       EHT99961.1  [L=193]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1665.11
//
Query:       EHT99962.1  [L=129]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1231.79
//
Query:       EHT99963.1  [L=174]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.45   10.5   8.4       0.19   11.7   3.8    2.4  2  ALF       Short repeats of unknown function


Domain annotation for each model (and alignments):
>> ALF  Short repeats of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.8   1.1e-05      0.19      13      29 ..      72      87 ..      66      90 .. 0.88
   2 ?    0.5   0.8     0.033     6e+02      17      30 ..      87     101 ..      85     102 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
         ALF 13 paVraAAqaALdaGtpa 29
                p+++aAAqaALd G +a
  EHT99963.1 72 PQLKAAAQAALD-GNAA 87
                99*********7.9776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.033
         ALF  17 aAAqaAL.daGtpaa 30 
                 a A++AL +aGt aa
  EHT99963.1  87 AGAERALnRAGTLAA 101
                 689****75577665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1665.79
//
Query:       EHT99964.1  [L=135]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-32  110.0   0.0    6.4e-32  109.8   0.0    1.0  1  DUF4054   Protein of unknown function (DUF4054)


Domain annotation for each model (and alignments):
>> DUF4054  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   3.6e-36   6.4e-32       1     106 [.      13     125 ..      13     126 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 3.6e-36
     DUF4054   1 fralfpef...aavpdaaiqawldlAallvsakrfgk.lreqalallaAHll...aadgraaaaggaggaaagrvtsasvGkvsvsydesaaanasagw 92 
                 fr +fp+f   a++pd++i++ l+lA++l+s++ +gk l +++ +l++AH++   aad+ra+  gg gg+++g ++s+sv+kvsvsyd+sa+ n++ag+
  EHT99964.1  13 FRRDFPQFadpAKYPDVQIEFRLNLADELLSENVTGKkLFPYFAELFVAHYMtlwAADSRAMLVGGPGGSTNGVQSSKSVDKVSVSYDTSATLNPDAGF 111
                 899**********************************9************************************************************* PP

     DUF4054  93 lnqTpYGqeflall 106
                 +n+T+YG+ef++l+
  EHT99964.1 112 WNNTRYGAEFYQLI 125
                 ************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1304.04
//
Query:       EHT99965.1  [L=129]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-05   23.7   0.6    2.8e-05   23.7   0.6    1.1  1  FAM76          FAM76 protein
      0.001   19.2   3.1     0.0015   18.7   3.1    1.2  1  RasGAP_C       RasGAP C-terminus
     0.0013   18.5   0.2     0.0015   18.3   0.2    1.0  1  CR6_interact   Growth arrest and DNA-damage-inducible protein
     0.0023   18.2   2.9     0.0032   17.7   2.9    1.2  1  DUF5082        Domain of unknown function (DUF5082)
     0.0036   16.6   0.1     0.0036   16.6   0.1    1.0  1  MPS2           Monopolar spindle protein 2
     0.0047   17.1   2.4     0.0052   16.9   2.4    1.1  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
     0.0049   16.5   0.8     0.0053   16.4   0.8    1.1  1  ASD2           Apx/Shroom domain ASD2
     0.0069   16.3   1.5       0.01   15.8   1.5    1.4  1  Sec2p          GDP/GTP exchange factor Sec2p
  ------ inclusion threshold ------
      0.018   15.1   0.5      0.018   15.1   0.5    2.2  2  DUF2680        Protein of unknown function (DUF2680)
       0.02   14.7   3.0       0.15   11.9   3.0    1.9  1  KASH_CCD       Coiled-coil region of CCDC155 or KASH
       0.02   15.5   4.4      0.036   14.7   4.2    1.6  1  SlyX           SlyX
      0.023   13.6   1.4      0.026   13.4   1.4    1.1  1  Spc7           Spc7 kinetochore protein
      0.027   14.6   2.3      0.036   14.2   2.3    1.2  1  Tropomyosin_1  Tropomyosin like
      0.029   13.7   2.3      0.037   13.4   2.3    1.1  1  TraF_2         F plasmid transfer operon, TraF, protein
      0.031   14.4   1.8      0.046   13.8   1.8    1.3  1  DivIVA         DivIVA protein
      0.043   13.6   7.6      0.083   12.7   5.0    2.1  2  DivIC          Septum formation initiator
      0.072   13.0   2.4      0.076   12.9   0.6    1.9  2  HSBP1          Heat shock factor binding protein 1
      0.081   12.3   2.2       0.12   11.7   2.2    1.3  1  DUF4407        Domain of unknown function (DUF4407)
       0.12   12.1   3.1       0.16   11.8   3.1    1.1  1  BBP1_C         Spindle pole body component BBP1, C-terminal
       0.13   12.6   0.2        7.8    6.9   0.0    2.2  2  HTH_Tnp_1      Transposase
        1.4    9.0  12.8          4    7.5  12.8    1.7  1  FlxA           FlxA-like protein


Domain annotation for each model (and alignments):
>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.6   3.2e-08   2.8e-05     204     264 ..      40     101 ..       3     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.2e-08
       FAM76 204 etskksldsnssdhlva.vtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelr 264
                 ++  ++++s+ s+ ++    +L+  i sl+ q++ kd+++++kd+ i++lk  ll+ ++++ 
  EHT99965.1  40 SHWFTQAHSELSESVISdTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQND 101
                 333447888889998863678******************************97766655443 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.1   1.7e-06    0.0015      18      74 ..      52     108 ..      44     112 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.7e-06
    RasGAP_C  18 lgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqle 74 
                 + vis  +++q +++++++ i+ k++++    + +  l+e+l +L+e+n+ l+ q++
  EHT99965.1  52 ESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQIA 108
                 5699***************************************************97 PP

>> CR6_interact  Growth arrest and DNA-damage-inducible proteins-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   1.8e-06    0.0015      63     147 ..      36     122 ..      18     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
  CR6_interact  63 VdpkslfpsaerleeleaeeveeeeslakmleknrakkeekearrkaReeeia...kkleKlpqliadlkakiakreaeaqaakerke 147
                    +++s + ++++  el    +  ++ l+ + ++++a+ + k++++ ++++ ia   + l Kl++  + l+a+ia+++   + ak++ke
    EHT99965.1  36 EEVASHWFTQAH-SELSESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIAdlkEALLKLQEQNDSLQAQIAAAQTGGNGAKDAKE 122
                   356677888666.88988999999*****************************9999*******************999998888887 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.9   3.8e-06    0.0032       5      55 ..      65     115 ..      61     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.8e-06
     DUF5082   5 isklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekpln 55 
                 i +lqaqia++ ++i + ++ I+ Lkea  kl++++ sl++++ + ++  n
  EHT99965.1  65 IDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQIAAAQTGGN 115
                 789**************************************9999888666 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.3e-06    0.0036     139     209 ..      38     108 ..       1     127 [. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.3e-06
        MPS2 139 lldllkkqesPeklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkkrlseykekYellqrefs 209
                 ++     q+  e + +    +  L+  ++sl+  + +kd+ + +k+  + +Lk+ l +++e+ ++lq +  
  EHT99965.1  38 VASHWFTQAHSELSESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQIA 108
                 455555666666677777888899999****************************************9876 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.4   6.1e-06    0.0052     108     179 ..      36     107 ..       3     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-06
     UPF0242 108 keeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLeskV 179
                  e +++  ++   +L+e       d +     l++q+a k +++ +  + i ++++ l k q+q+  L++++
  EHT99965.1  36 EEVASHWFTQAHSELSESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQI 107
                 55667777888888998888888899999999*************************************998 PP

>> ASD2  Apx/Shroom domain ASD2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   6.2e-06    0.0053      73     152 ..      37     115 ..       4     123 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.2e-06
        ASD2  73 sssayystsaakaelltklkdeteleekdeeeekseeeedldlkekkeeLieslskklevLkeeqealleeikanealge 152
                 +  ++  t+a+++  ++ ++d+ +l+   ++ +++ +++d+++   k++Li+ l++ l +L+e+  +l+++i a ++ g+
  EHT99965.1  37 EVASHWFTQAHSELSESVISDTDDLQPIIDSLQAQIADKDKQIVD-KDQLIADLKEALLKLQEQNDSLQAQIAAAQTGGN 115
                 333333333333333333444444444444444466777777876.579***********************99998776 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.5   1.2e-05      0.01      43      89 ..      56     102 ..      32     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXXX CS
       Sec2p  43 kekealekkneklkeqLkeketlleslqeqLkeLkevlekmeeesee 89 
                  ++++l+   ++l++q+++k++++ ++++  ++Lke+l k++e++++
  EHT99965.1  56 SDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDS 102
                 6788899999********************************99876 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.5   2.1e-05     0.018       9      26 ..      65      82 ..      58      83 .. 0.90
   2 ?   -0.8   0.6       1.8   1.5e+03       9      22 ..      93     106 ..      84     110 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
     DUF2680  9 leaLyqqiaelrKqivdK 26
                +++L++qia++ KqivdK
  EHT99965.1 65 IDSLQAQIADKDKQIVDK 82
                89***************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
     DUF2680   9 leaLyqqiaelrKq 22 
                 l +L++q  +l+ q
  EHT99965.1  93 LLKLQEQNDSLQAQ 106
                 44555555555544 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.0   0.00017      0.15     128     181 ..      54     107 ..      44     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
    KASH_CCD 128 LlkekaeLkkqlheleellaekealleektkqieeLkltieEyssiieeLraek 181
                  ++ +++L+  +++l++ +a+k++ +++k + i +Lk ++  ++  ++ L+a++
  EHT99965.1  54 VISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQI 107
                 566788999999999999999999999999999999999988888888888776 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   4.2   4.2e-05     0.036       5      64 ..      65     125 ..      61     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX.XXXXX CS
        SlyX   5 leeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgasea.eeepP 64 
                 ++ L+ ++a  +++i + ++ +a+  + + +lq+q + l+ +++++++  +++++ +e +P
  EHT99965.1  65 IDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQIAAAQTGGNGAKDaKESKP 125
                 8899999999999999999999999999999999999999999999988875554466655 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.4   3.1e-05     0.026     204     255 ..      61     112 ..      33     127 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
        Spc7 204 lreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaer 255
                 l+  +++l+a+i+ k k++ ++ + +++l+e++ +l+eq ++l+++ia+a+ 
  EHT99965.1  61 LQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQIAAAQT 112
                 4445677777788888888888888888888888888888888888887765 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.3   4.2e-05     0.036       8      70 ..      57     119 ..      52     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.2e-05
  Tropomyosin_1   8 eaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesek 70 
                    ++++ q   + l++++ +++++ ++k+q i++L++ + +l+e+ + l++++  a++  + ++ 
     EHT99965.1  57 DTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQIAAAQTGGNGAKD 119
                    667777788999***************************************999876555444 PP

>> TraF_2  F plasmid transfer operon, TraF, protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.3   4.4e-05     0.037      34      90 ..      52     107 ..      40     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-05
      TraF_2  34 dnlvDkiDdlsdildgleaavnaasadetqvdeaaddlnalLedlggdgylkasagv 90 
                 + ++ + Ddl+ i+d+l+a+++ ++++ ++ d+ ++dl+++L +l++++  +++a +
  EHT99965.1  52 ESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQN-DSLQAQI 107
                 568999**************99999886669**************9998.5555444 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.8   5.4e-05     0.046      28      82 ..      52     106 ..      46     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  28 dqvakdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkan 82 
                 ++v++d  +l    ++l+++++++++++ + ++l  +Lk++l+  qe  + ++a+
  EHT99965.1  52 ESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDSLQAQ 106
                 5799999999************************************999998876 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.16   1.4e+02      20      33 ..      66      79 ..      51      82 .. 0.52
   2 ?   12.7   5.0   9.8e-05     0.083      18      50 ..      78     110 ..      77     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
                HHHHHHHHHHHHHH CS
       DivIC 20 kqlkqeiaalqael 33
                 +l+++ia++ +++
  EHT99965.1 66 DSLQAQIADKDKQI 79
                23444444444443 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 ++ +++q ia+l++ l kl+++n++L+a+++  
  EHT99965.1  78 QIVDKDQLIADLKEALLKLQEQNDSLQAQIAAA 110
                 57789999**********************876 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   8.9e-05     0.076      20      47 ..      49      76 ..      46      79 .. 0.91
   2 ?   -1.0   0.0         2   1.7e+03      37      44 ..     101     108 ..      85     113 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.9e-05
       HSBP1 20 tmsdqilsriDdMssriDdLEksiadlm 47
                ++s++++s  Dd++  iD+L+++iad  
  EHT99965.1 49 ELSESVISDTDDLQPIIDSLQAQIADKD 76
                69***********************965 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
       HSBP1  37 DdLEksia 44 
                 D+L+++ia
  EHT99965.1 101 DSLQAQIA 108
                 66666666 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.2   0.00014      0.12     114     183 ..      44     115 ..      35     129 .] 0.53

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
     DUF4407 114 eeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk..gtgttgvaGkgp 183
                 +++++e +e   + +++l++ ++ l+aqia+ +++i  +++ +++l++++ k  +++   ++++ + +  g 
  EHT99965.1  44 TQAHSELSESVISDTDDLQPIIDSLQAQIADKDKQIVDKDQLIADLKEALLKLQEQNDslQAQIAAAQTGGN 115
                 555555555555556667777777777777666666666666666666555555544445222222222222 PP

>> BBP1_C  Spindle pole body component BBP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.1   0.00019      0.16      81     128 ..      56     106 ..      45     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      BBP1_C  81 kesldlqskianlekqlvd...qaiekdreikkleeklldlelrnkeleek 128
                 ++++dlq  i +l+ q+ d   q ++kd+ i++l+e ll+l+ +n  l+++
  EHT99965.1  56 SDTDDLQPIIDSLQAQIADkdkQIVDKDQLIADLKEALLKLQEQNDSLQAQ 106
                 66777777777777777653335699*******************999965 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0092       7.8      32      74 ..      31      72 ..      29      73 .. 0.88
   2 ?    3.6   0.1       0.1        86      50      74 ..      83     107 ..      74     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0092
   HTH_Tnp_1 32 rhgvspnqLykWrrqyregeeaspaefeltaleeenrelkrel 74
                rh+v ++  ++W  q+ +++++s ++    +l++ +  l++++
  EHT99965.1 31 RHNVPEEVASHWFTQAHSELSESVIS-DTDDLQPIIDSLQAQI 72
                8***************9999999998.9999999988888766 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.1
   HTH_Tnp_1  50 geeaspaefeltaleeenrelkrel 74 
                 +++ ++++ +l++l+e+n  l++++
  EHT99965.1  83 DQLIADLKEALLKLQEQNDSLQAQI 107
                 5555667789***********9887 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.8    0.0047         4      15      76 ..      54     118 ..      44     129 .] 0.61

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0047
        FlxA  15 sasqiasLqkQiknlqkqLkelses...deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaeka 76 
                   s++  Lq  i++lq q+ +  ++   +++   + k+    +q+Q ++lqaQIa  q   +  +
  EHT99965.1  54 VISDTDDLQPIIDSLQAQIADKDKQivdKDQLIADLKEALLKLQEQNDSLQAQIAAAQTGGNGAK 118
                 4455555555555555555555555444344455588889999************9997544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1599  (0.0891851); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 1100.77
//
Query:       EHT99966.1  [L=313]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-80  269.4   0.1    3.5e-80  269.0   0.1    1.0  1  DUF2184   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2184  Uncharacterized protein conserved in bacteria (DUF2184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.0   0.1     2e-84   3.5e-80       4     251 .]      73     313 .]      71     313 .] 0.99

  Alignments for each domain:
  == domain 1  score: 269.0 bits;  conditional E-value: 2e-84
     DUF2184   4 kiisnyaddlprvdvdieketakvkligasygytvqElraaqalGrsLdtrkadaarraadkkinkiayvGdekkgltGLlnspgvtvttaaagatgst 102
                 ++++++++++++v+vdi+k+ ++++l+g+++g+tv El+aaq++Gr++dt+k d+++++++++ ++++y+Gd ++gl+GL n  gvt  +      + +
  EHT99966.1  73 NWVGKDSTAIAGVNVDIGKDGNPLNLWGMELGWTVVELAAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYIGDDALGLKGLANLVGVTLNN------APK 165
                 7****************************************************************************************9......679 PP

     DUF2184 103 kWadkTadeiladinaaltavwtasgyveapdtlllppsqyadLatrrvsdtgnktilsflkenniatkqkgrpLtiekvkelegagtggkdrmvaYtn 201
                 +Wa++T deil+ +n +l+ +w asgy+++p  l +pp+qy+ La+r+vs++gn+++l++l+ n+ia +q+g+pL+i++vk+l+ +g+ggkdrmvaYtn
  EHT99966.1 166 TWANSTNDEILDSVNSILSNAWVASGYSVVPSDLRIPPEQYSLLASRKVSEAGNQSLLTYLAVNTIAFHQNGVPLEIKAVKWLKARGVGGKDRMVAYTN 264
                 9************************************************************************************************** PP

     DUF2184 202 dpdvvelelpmpltrlpaqkrnlefevpyearlggveirypkaivyvDgI 251
                 d+++v+++l +pl+ +p+q+r l ++ +y+++lg ve +y++++ yvDgI
  EHT99966.1 265 DKKYVRYPL-VPLQSVPVQYRGLYQIATYYGKLGAVEPVYKETLSYVDGI 313
                 *********.***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2680.57
//
Query:       EHT99967.1  [L=167]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1262.02
//
Query:       EHT99968.1  [L=410]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-47  159.8   0.0    9.1e-47  159.2   0.0    1.3  1  DUF2213   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.11   12.9   0.2       0.46   10.9   0.1    2.0  2  DUF2277   Uncharacterized conserved protein (DUF2277)


Domain annotation for each model (and alignments):
>> DUF2213  Uncharacterized protein conserved in bacteria (DUF2213)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.0     1e-50   9.1e-47       3     167 ..      15     181 ..      13     182 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1e-50
     DUF2213   3 ltaeGfLvveavpiaragvqpYlgreipklgldpdriirvlrdpdelfkkealasfegkpvtdeHpee......evtaenwkelavGtv...grdvrfe 92 
                   a+G+L++++vpi r+g q Y ++++p+l++d+ + i v+r+p+++f++++lasfeg+ +t+ Hpe+       v++enwkelavG+    +r+++ +
  EHT99968.1  15 QLADGSLLCRDVPIGRTGKQLYGAADLPNLKPDKLGEIVVTRSPEQVFHPATLASFEGMSITILHPEDengnvrLVNPENWKELAVGHLqnvRRGTGDQ 113
                 568*************************99999999******************************999999999*************98889****** PP

     DUF2213  93 geylvadllitdaeaiaaiesgklrelSagYeadldm.tpgeydGekydavqrnirgnHvAlVeeGRaGpdvaigD 167
                 ++ ++adl+++d++ai+ ie+g  re+S+gY+a++d+ +pg       +a+q +i gnHvAlV++GRaG+++aigD
  EHT99968.1 114 SDLMLADLIVKDESAIQLIEDGL-REVSCGYDAEYDQtEPG-------KAEQVDITGNHVALVPKGRAGNRCAIGD 181
                 ***********************.*************8899.......***************************9 PP

>> DUF2277  Uncharacterized conserved protein (DUF2277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.45     4e+03      51      68 ..     260     277 ..     258     289 .. 0.70
   2 ?   10.9   0.1   5.1e-05      0.46       9      56 ..     324     372 ..     319     377 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.45
     DUF2277  51 eiaaaterLLdeLetrap 68 
                 +i++  ++LL++Le +a 
  EHT99968.1 260 DIKTLLKALLAKLEGNAT 277
                 577778889999988773 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.1e-05
     DUF2277   9 rnlePpateeeiraAA.lqyVRKvsGvrkpsaaneeaferAveeiaaat 56 
                 r+++P a + ++ aAA +  VR v G  +  +  ++ ++ A +++++++
  EHT99968.1 324 RKVKPTAFKRDVLAAAdKTLVRQVVGDADIRKLPKQSVDMAFNAVSEIA 372
                 6789********99993469******99999999999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3264.85
//
Query:       EHT99969.1  [L=202]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   61.0   0.0    3.2e-16   60.1   0.0    1.5  1  Phage_Mu_F  Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> Phage_Mu_F  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.8e-20   3.2e-16       2     109 ..      82     188 ..      81     191 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.8e-20
  Phage_Mu_F   2 kirdavtqaiarGegeeelakelkkrgqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvavkdsrtrpeHaaldGkvfkvddpfwq... 97 
                 +i+++ ++a+  G + e +ake++  g++ srsr+++iarte  ra  ++ l+ +a++   + + + ++++ d  +r +H++++Gk +++  p+     
  EHT99969.1  82 DIQNKAIKALVTGGRAEPFAKEIAASGDV-SRSRANLIARTELGRA--TGALD-QARALSIGSNGYIWRTAEDGDVRHSHREMEGKFVEWGRPPTLdgm 176
                 69999************************.9*************95..44554.455677777778************************999874346 PP

  Phage_Mu_F  98 tgappedvnCRC 109
                 tg+++e +nCRC
  EHT99969.1 177 TGHAGELPNCRC 188
                 899********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1525.80
//
Query:       EHT99970.1  [L=489]
Description: hypothetical protein CKS_1927 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-112  374.9   0.0     4e-112  374.5   0.0    1.1  1  DUF1073   Protein of unknown function (DUF1073)


Domain annotation for each model (and alignments):
>> DUF1073  Protein of unknown function (DUF1073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.5   0.0  2.2e-116    4e-112       6     355 ..      54     402 ..      50     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 374.5 bits;  conditional E-value: 2.2e-116
     DUF1073   6 lyrqswlarkiidipAedmlrngielkgekdkdqlkaieaelkrLglkeallealkwarlfGgaallikvkdededlskPldpekvgkgslkglrvldr 104
                  yr+sw++  ++d++++dm+r+gi +++e d++++  +ea+l++L++++al+++lkw+rl+Gga+ +i+++++   + +Pl++e++g+g++kg+  ldr
  EHT99970.1  54 SYRGSWVIGEAVDAIPDDMTRKGIRITSEIDAKDRGTLEAQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQ--APMTPLRLETIGEGKFKGILPLDR 150
                 59***********************************************************************..8*********************** PP

     DUF1073 105 eev.ptsneldsdplspdygkpetYevkskedgtaavkvHkSRlirfigkelpdmlkpaenfwGeSvlqslldavkrfdraaasvaqlleranllvikt 202
                 +++ p +  +      pd gkpe+Y v  +++g  a+++H+SRlirf+g  lp ++k++en wG+Sv+++++d++++fd+a++ +aql+++a+l+++k+
  EHT99970.1 151 WMInP-VLTRRIKEMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYKV 248
                 ***55.5555555555*********************************************************************************** PP

     DUF1073 203 dgladalaagdee.deleerleliklarsnegmlvidkeeeleqkstslsglkdllaqfqeklaaaskiPltrLfGqspaGlnatGegDlrnYydrika 300
                 ++l++ +a g+++ ++l ++++li++++snegm+++d+++++e++++s+sgl+d+l+qf+e++++a +iPl+rLfGqsp+G+ +tG+ Dl+nYydr+++
  EHT99970.1 249 EKLRELIALGGQAfEALLKNIDLIRQFQSNEGMTLMDAKDTFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGF-STGDADLANYYDRVSS 346
                 *****999999999********************************************************************.8*************** PP

     DUF1073 301 lQeaelrpvLerllellllselge.rpddlsfeFnpLwqlsekekAeirkknaead 355
                 lQe++lr +++r+l+++ +selg+  pdd++feFnpLwq+s+ ++ +++ ++++a+
  EHT99970.1 347 LQERRLRLPMRRILDIMHRSELGKpLPDDFTFEFNPLWQMSDVDRSTVAVNTTNAI 402
                 ************************99********************9999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3861.88
//
Query:       EHT99971.1  [L=540]
Description: hypothetical protein CKS_1926 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4031.72
//
Query:       EHT99972.1  [L=157]
Description: hypothetical protein CKS_1925 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-49  164.9   0.2    6.7e-49  164.4   0.2    1.2  1  DUF2280         Uncharacterized conserved protein (DUF2280)
  ------ inclusion threshold ------
      0.049   14.1   0.2       0.17   12.4   0.0    1.9  2  Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain


Domain annotation for each model (and alignments):
>> DUF2280  Uncharacterized conserved protein (DUF2280)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.2   7.5e-53   6.7e-49       1     102 [.       1     102 [.       1     103 [. 0.99

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 7.5e-53
     DUF2280   1 maaLkdevKafivqalAcfdtpsevvkavkeefgvkvsrqqvesydPtkaagkdLskkwrelFeetRkaFledtaeipianravRLraLerlaekaekk 99 
                 maaLk++vKafi+q+lAc+dtps+vv+av++efg+k++rqq+es+dPtka+gk+L+kkw ++F++tR++Fl++t++ipian+++RLr+L+r+a+k+e +
  EHT99972.1   1 MAALKPDVKAFIIQSLACYDTPSQVVEAVQKEFGIKITRQQAESHDPTKASGKTLAKKWIAMFHATRERFLTETSDIPIANKSYRLRVLDRMATKTEGM 99 
                 9************************************************************************************************** PP

     DUF2280 100 knl 102
                 kn+
  EHT99972.1 100 KNF 102
                 *97 PP

>> Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05      0.17      33      66 ..      21      54 ..      21      59 .. 0.92
   2 ?   -1.4   0.0      0.37   3.3e+03      37      44 ..     109     116 ..      92     138 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
                    -HHHHHHHHHHHT-----GGGEE-TTT-SBSSEE CS
  Ribosomal_L9_C 33 takdIaealkkklgieidkkkieleepiktlGey 66
                    t+++++ea++k++gi+i +++ e ++p k+ G++
      EHT99972.1 21 TPSQVVEAVQKEFGIKITRQQAESHDPTKASGKT 54
                    6789********************99***99986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.37
                     HHHHHHHH CS
  Ribosomal_L9_C  37 Iaealkkk 44 
                     I +a k+ 
      EHT99972.1 109 IEQAAKEV 116
                     44444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1325.41
//
Query:       EHT99973.1  [L=184]
Description: hypothetical protein CKS_1924 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1541.82
//
Query:       EHT99974.1  [L=61]
Description: hypothetical protein CKS_1923 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 549.89
//
Query:       EHT99975.1  [L=68]
Description: putative Rz1 lytic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 638.18
//
Query:       EHT99976.1  [L=130]
Description: hypothetical protein CKS_1921 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   13.2   1.3      0.081   12.8   1.3    1.4  1  DUF2570   Protein of unknown function (DUF2570)


Domain annotation for each model (and alignments):
>> DUF2570  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.3   4.5e-06     0.081      54     107 ..      60     110 ..       5     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-06
     DUF2570  54 eqerqavekqqkianelkakveeekeevktilkqesCakvalPrsvidsikrLh 107
                  +     e+ q+  +++  + + +++++k+ ++ + Ca   +P++++    rLh
  EHT99976.1  60 AITNIILETNQHAKQQIALESQRAENDIKAAVADDDCAVRVVPSGAVK---RLH 110
                 455556788999999*****************************9986...777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 1213.68
//
Query:       EHT99977.1  [L=197]
Description: putative chitinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-07   31.1   0.2    7.4e-06   26.0   0.1    2.5  2  Glyco_hydro_19  Chitinase class I


Domain annotation for each model (and alignments):
>> Glyco_hydro_19  Chitinase class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   4.1e-10   7.4e-06      92     155 ..      94     156 ..      14     164 .. 0.81
   2 ?   -2.3   0.0      0.18   3.3e+03     190     205 ..     170     185 ..     164     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.1e-10
  Glyco_hydro_19  92 ycessakwplaagkkyyGrGpiqlsynynygeaGqaiGqdllnnpdlvatdavvsfktalwfwm 155
                     y ++  + +   g ky GrG iq++   ny ++G a+  dl+  p+++ ++   + ++a wf+ 
      EHT99977.1  94 YSNRLGNKAPCDGWKYRGRGLIQITGLDNYRTCGAALKLDLVTSPEQLEQELQ-AARSAAWFFT 156
                     555544444556889********************************987755.5677778875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.18
  Glyco_hydro_19 190 itniingglecgkged 205
                     +t iinggl+   +++
      EHT99977.1 170 VTRIINGGLNGIDDRK 185
                     799*****98776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1634.19
//
Query:       EHT99978.1  [L=146]
Description: hypothetical protein CKS_1919 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-07   28.9   0.0    1.4e-06   28.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.8e-11   1.4e-06      24     164 ..       7     125 ..       2     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 7.8e-11
  Methyltransf_23  24 grvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylll 117
                      g vLd+G G G + +     ++   g+D +p+ v+++ + + a+        a+  + ++   ++++vleh++ p+ +++q+ +      y+++
       EHT99978.1   7 GPVLDVGIGAGQFVS----SRAGTFGFDVNPAGVAWL-NERGAF--------ADLYASQWRALTMWDVLEHIDEPELAVQQASE------YVFV 81 
                      679********9999....777889******999997.444444........444589**************************......**** PP

  Methyltransf_23 118 seplaslkedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      s p      + ++l  +  +++ +hi +f+ + +k ++ e+G+e  e
       EHT99978.1  82 SIPI--FTDAGDILRSHHFRKN-EHIWYFTDDGIKGWFAEQGFECAE 125
                      **93..3466777778888877.9*******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1273.31
//
Query:       EHT99979.1  [L=313]
Description: hypothetical protein CKS_1918 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2579.41
//
Query:       EHT99980.1  [L=227]
Description: hypothetical protein CKS_1917 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1868.00
//
Query:       EHT99981.1  [L=64]
Description: endodeoxyribonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-11   42.4   0.7    1.1e-10   42.1   0.7    1.1  1  RusA      Endodeoxyribonuclease RusA


Domain annotation for each model (and alignments):
>> RusA  Endodeoxyribonuclease RusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.7   6.4e-15   1.1e-10      62     121 ..       2      59 ..       1      60 [. 0.94

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 6.4e-15
                 .................SS---HHHHHHHHHHHHHTTSBS-GGGEEEEEEE--TT-..EEEE CS
        RusA  62 pkslskkkkqealek..tkkpDiDNlaKavlDalngivwkDDsqvvdlivekvyseeprvev 121
                 pks+skkk+q+  ++  ++kpD DNl Ka+lDa+    ++DD  + d +v k ++e+ ++ +
  EHT99981.1   2 PKSWSKKKRQQHDGQphQTKPDKDNLEKALLDAI----FDDDCRIWDGRVTKRWGETGQIII 59 
                 99**********999*****************96....99***************9988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 574.55
//
Query:       EHT99982.1  [L=56]
Description: hypothetical protein CKS_1915 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.1   0.3    1.3e-05   25.0   0.3    1.0  1  DUF1364   Protein of unknown function (DUF1364)


Domain annotation for each model (and alignments):
>> DUF1364  Protein of unknown function (DUF1364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   7.1e-10   1.3e-05      40      91 ..       1      51 [.       1      52 [. 0.92

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 7.1e-10
                ------SSSEEEE-HHHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHHTT CS
     DUF1364 40 vglksddllaafaCsachdaidrRtrildaeeaelvhaegvlrTqealekeg 91
                +glk+dd+  a  C +chd id  ++ l++ e+++++ ++++ T  ++ + g
  EHT99982.1  1 MGLKADDCATAAICVCCHDSIDNGSK-LSRDERRQLMDRAIVLTVIQIARLG 51
                689********************999.999999999*999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 473.75
//
Query:       EHT99983.1  [L=93]
Description: hypothetical protein CKS_1914 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.061   12.9   0.0      0.075   12.6   0.0    1.0  1  CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyade


Domain annotation for each model (and alignments):
>> CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.2e-06     0.075     136     204 ..      10      79 ..       5      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.2e-06
  CPSF73-100_C 136 knshaklskeerlerllllLeaqFGedkvie...lpkepvpgvevkv.dkkeakidletleVecesevlkdrv 204
                   +++++++s++++ e+l ++++++F ++k ++   ++k  v+  + k+ d +e +  l+ +eV c+++ +k r+
    EHT99983.1  10 TAASKHSSQTHTDEELHEFFKSMFCPAKQVTvfgVQK-WVQ--STKLlDTEEMTFYLRRIEVWCAERGIKLRI 79 
                   677899999****************999555333322.222..25666******************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 818.07
//
Query:       EHT99984.1  [L=48]
Description: hypothetical protein CKS_1913 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 405.06
//
Query:       EHT99985.1  [L=112]
Description: hypothetical protein CKS_1912 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   14.6   0.7      0.033   13.9   0.7    1.4  1  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl
      0.077   13.4   0.0      0.098   13.1   0.0    1.1  1  Imm45     Immunity protein 45


Domain annotation for each model (and alignments):
>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.7   3.7e-06     0.033      20      47 ..      75     102 ..      61     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.7e-06
                 HHTT----TT-HHHHCSTT---HHHHHH CS
     Fer4_20  20 eAsRClqCkkapcvkgCPveidipefik 47 
                  A+RC +C +a  v++CP + d + +++
  EHT99985.1  75 SANRCGKCGDALPVESCPCDGDSQCWVT 102
                 69*****************999988875 PP

>> Imm45  Immunity protein 45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.098       7      82 ..      34     107 ..      28     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
       Imm45   7 dvirrGtvlrvpgvyPyedevvdfivveaesaegssgLlvasGhkaGlvevvlPkesvlkevvglstaWlienWqk 82 
                 +++ r +  r pg+ Pye      +++ + +a+ +  +   s  ++G+    lP es +    g s+ W+   W++
  EHT99985.1  34 EMLERNCASRRPGRAPYEMSEYVAMLIRQDDARVRGRIKAISANRCGKCGDALPVESCPC--DGDSQCWVTRGWHE 107
                 678999************866666888888999999999******************987..68899999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1028.18
//
Query:       EHT99986.1  [L=142]
Description: hypothetical protein CKS_1911 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.7   0.1      0.089   13.2   0.0    1.7  2  Mvb12     ESCRT-I subunit Mvb12


Domain annotation for each model (and alignments):
>> Mvb12  ESCRT-I subunit Mvb12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.9e-06     0.089      41      75 ..      26      61 ..       9      64 .. 0.86
   2 ?   -1.4   0.0      0.18   3.1e+03      49      59 ..      80      90 ..      62     112 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.9e-06
                HHHHH.HHHHHHHHHHHHTHHHHHHHHHHHHS--XX CS
       Mvb12 41 pwyke.cdelvealekhdksgeeFdkWYkekyLskk 75
                +w+k   d +++++e+++ ++++F +WY e+ Lskk
  EHT99986.1 26 AWIKLlMDGMTREVERTQIKSRSFGAWYVEQNLSKK 61
                78886268899***********************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.18
                HHHHHHHHHTH CS
       Mvb12 49 lvealekhdks 59
                l+++++ ++++
  EHT99986.1 80 LESEIKFAEER 90
                33333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1866  (0.104077); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 1268.10
//
Query:       EHT99987.1  [L=235]
Description: hypothetical protein CKS_1910 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.1   2.2      0.061   12.7   2.2    1.1  1  CobT      Cobalamin biosynthesis protein CobT


Domain annotation for each model (and alignments):
>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.2   3.4e-06     0.061     164     229 ..      86     149 ..      79     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.4e-06
        CobT 164 lwRefieekagkdldrlaealeDqkaFaravrqlLqdldlaeesaeepeeedeeeeedeeeeeees 229
                  w e++e+ ag ++ +l ++  D +aF r +++ L++    +++aee+e+ed ++e+ ++ + +++
  EHT99987.1  86 YWSEKLEAGAGCSARELLAKEYDHDAFCRSLKESLSEYL-DDSEAEESEDEDWDDED-DTPDSDKA 149
                 699******************************999742.34455555444444444.44444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1903.74
//
Query:       EHT99988.1  [L=55]
Description: hypothetical protein CKS_1909 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 476.95
//
Query:       EHT99989.1  [L=96]
Description: hypothetical protein CKS_1908 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-34  117.4   0.0    3.2e-34  117.3   0.0    1.0  1  DUF4406   Domain of unknown function (DUF4406)
  ------ inclusion threshold ------
        0.1   13.4   0.0       0.18   12.6   0.0    1.7  1  DUF1937   Domain of unknown function (DUF1937)


Domain annotation for each model (and alignments):
>> DUF4406  Domain of unknown function (DUF4406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   3.6e-38   3.2e-34       1      90 [.       3      91 ..       3      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 3.6e-38
     DUF4406  1 vYiaGpitGlpeynkeafeeaaeklkeaGytvlnpavllpaglsweaymriclalllkcdaivmLpgweeSkGAtlElelakklglaivy 90
                +YiaGp+tG+p+yn++af+ +a +l+ +G++vlnpa+l p+gls ++ym++cla+l+++d+i++L gw++S+GA++E++la+kl l i+ 
  EHT99989.1  3 IYIAGPMTGIPKYNRPAFHFEAMRLSSEGHVVLNPATL-PDGLSQPEYMDVCLAMLRCADGIFLLSGWQNSAGAKAEHALAQKLDLVIIH 91
                8************************************9.***********************************************9986 PP

>> DUF1937  Domain of unknown function (DUF1937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05      0.18      68     106 ..      48      84 ..       2      93 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH CS
     DUF1937  68 lWaevdalildalsalvvldipGWkdslGikrEveafea 106
                  +++v+ ++l   +   +  + GW++s+G k E + +++
  EHT99989.1  48 EYMDVCLAMLRCADG--IFLLSGWQNSAGAKAEHALAQK 84 
                 444444444433332..34489***********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 811.77
//
Query:       EHT99990.1  [L=465]
Description: replication protein P [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-64  216.0   0.0    1.3e-63  214.8   0.0    1.5  2  DnaB_C    DnaB-like helicase C terminal domain
      1e-31  109.0   0.0    2.4e-31  107.9   0.0    1.7  1  DnaB      DnaB-like helicase N terminal domain
    2.8e-14   53.1   0.2    7.4e-14   51.8   0.1    1.7  2  AAA_25    AAA domain
    1.2e-07   31.3   0.1    3.9e-07   29.7   0.0    2.0  2  ATPase    KaiC
  ------ inclusion threshold ------
       0.19   10.5   0.0       0.42    9.4   0.0    1.5  2  AAA_35    AAA-like domain


Domain annotation for each model (and alignments):
>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.86   3.1e+03      80     118 ..      18      55 ..       6      72 .. 0.65
   2 !  214.8   0.0   3.5e-67   1.3e-63       1     243 [.     188     432 ..     188     439 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.86
                 HHTTSXHHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  80 rtgklkeedweklteaieelseaklfiddtpaltvseir 118
                   g + ++  ++ ++a+++l+  +++i  ++ +  +e+r
  EHT99990.1  18 LGGMMLDSGSDRCQTAMSMLKPESFYIRPHQVI-FAEMR 55 
                 445555778889999999999999999876543.44444 PP

  == domain 2  score: 214.8 bits;  conditional E-value: 3.5e-67
                 SBXSSTHHHHHHCT..SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   1 GlstgfkdLDklts..GlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklkeedweklteaie 97 
                 Glstg ++LD+l++  Gl kg l++i+arp mGkt+l  ++a n+a+ e+lp ++fslem+++q+v+R++ + ++++++ ++  + ++++++   +a +
  EHT99990.1 188 GLSTGIQSLDDLLQpkGLVKGALMVIGARPKMGKTTLYSQLAVNCAEVEQLPALMFSLEMPDKQIVERMIGQVSRVNTDVFYADRYDDAKVAMAFAAGG 286
                 99*********98544******************************999***************************************99*99999999 PP

                 HHHHS.EEEEEEXSSXCHHHHHHHHHHHHHH.TTEEEEEEEEGGGTBTSCSSSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXXHHH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  98 elsea.klfiddtpaltvseirskarrlkke.kglgliviDyLqlmegseekenreqevseisrsLkalakelnvpvialsqLsravesredkrPvlsD 194
                 +l+++ +l++ddtp++t+++i ++ rr+k+e + +g++++DyL lm++++ +++       i+++Lk+lakeln+ v+ l qL+r++e+r++krP+ sD
  EHT99990.1 287 RLAQTgNLYVDDTPGITLAHIVAESRRIKRErGAVGMVLVDYLTLMTADK-ADRNDLAYGIITKGLKNLAKELNCIVVLLTQLNRDLEKRTNKRPMPSD 384
                 9998747************************999*************644.4555567999************************************** PP

                 HCCTTSCCCCXSEEEEEEECCHHHHHHCHHCEEEEEEEEETTSXXEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 195 LreSgsieqdADvvlflyrdeyykedseekgkaeiiiaKhRnGptgtvk 243
                  r+ g+ieqd D  + +yr+  y+e+ + +g++e+++  +R+Gptg v 
  EHT99990.1 385 SRDTGQIEQDCDYWIGIYREGAYDENAN-QGETELLLRLNRHGPTGVVY 432
                 ***********************98755.899**************986 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   6.7e-35   2.4e-31       3     103 .]       8     110 ..       6     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 6.7e-35
                 HHHHHHHHHHHHHHHHS..TTHHHHHHCC--GGGSSSHHHHHHHHHHHHHHHTTTS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC-S-CCCHHHHHH CS
        DnaB   3 pqsieaEqavLgalLld..peaidevadilkpedFyepahrliFeailelyekgepiDlvtvkeelekkgkledvggaaylaelvaavpsaanieeyae 99 
                 pq+ieaEq+vLg+++ld  ++++++++++lkpe+Fy + h+ iF+ ++el+ +++piDl+t+ e le+kg+ e++gg+ay+ae+++++psaani +ya 
  EHT99990.1   8 PQNIEAEQSVLGGMMLDsgSDRCQTAMSMLKPESFYIRPHQVIFAEMRELVANQKPIDLITLIESLESKGLGEQAGGFAYMAEISKNTPSAANIVHYAM 106
                 99**************97788****************************************************************************** PP

                 HHHH CS
        DnaB 100 ivke 103
                 +v+e
  EHT99990.1 107 LVRE 110
                 **97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   2.1e-17   7.4e-14      12     191 ..     186     370 ..     176     373 .. 0.80
   2 ?   -2.3   0.0      0.76   2.7e+03      70      93 ..     434     457 ..     410     461 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 2.1e-17
      AAA_25  12 vadlaapppprrwlvk.gllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal...........r 98 
                 +++l + ++++++l++   l++g+l ++ ++p+ GKttl ++la+ +a+         +eq + l+ s+E++ +++ +R+  +   +           +
  EHT99990.1 186 TRGLSTGIQSLDDLLQpKGLVKGALMVIGARPKMGKTTLYSQLAVNCAE---------VEQLPALMFSLEMPDKQIVERMIGQVSRVntdvfyadrydD 275
                 5667888889999998745579**************************7.........3789*****************99888777777788887543 PP

      AAA_25  99 ddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdv.galvealeriarrtgaavllvhHvgK 191
                 ++   ++  + +  +  +L+ +d+ g +l+  v++ ++  +e+  v++v +D l+ +++   ++n+ + g + + l+++a++++++v+l+ ++++
  EHT99990.1 276 AKVAMAFAAGGRLaQTGNLYVDDTPGITLAHIVAESRRIKRERGAVGMVLVDYLTLMTADKADRNDLAyGIITKGLKNLAKELNCIVVLLTQLNR 370
                 333333444444555677777777777777777775555555545***************999999999********************998876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.76
      AAA_25  70 eqgkVlyvsaEdsedelrrRlrav 93 
                  q++  +++++++++e +rR+  +
  EHT99990.1 434 DQRNGAIYDCDQAAAEQKRRANDA 457
                 688889999999999999998765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.55     2e+03     113     131 ..     106     124 ..      70     156 .. 0.73
   2 !   29.7   0.0   1.1e-10   3.9e-07       2      67 ..     190     256 ..     189     380 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.55
      ATPase 113 eaikeikakrvviDsitgl 131
                   ++e+  +r  iD++t+ 
  EHT99990.1 106 MLVREKAMERYGIDKLTSA 124
                 4578888888888888876 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.1e-10
      ATPase   2 ktgIeglDeil.kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrena 67 
                 +tgI+ lD++l   G+ +g+ + i   p  GKt++  q +++ ae  + p ++ ++e p +++ e++
  EHT99990.1 190 STGIQSLDDLLqPKGLVKGALMVIGARPKMGKTTLYSQLAVNCAEVEQLPALMFSLEMPDKQIVERM 256
                 7**********77***********************************************8877776 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.84     3e+03     275     310 ..      44      78 ..      35      84 .. 0.73
   2 ?    9.4   0.0   0.00012      0.42      30      76 ..     207     254 ..     194     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.84
      AAA_35 275 LqekpeLaealkkvvkssepvelepieaykLeslGL 310
                 ++ ++ + + ++++v +++p++l ++    Les GL
  EHT99990.1  44 IRPHQVIFAEMRELVANQKPIDLITL-IESLESKGL 78 
                 56677788899999999999998654.456788777 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00012
      AAA_35  30 pGalirikapkkmGKtSLlarilak.akqqgyktvsldlqladkeils 76 
                 +Gal+ i a  kmGKt L +++  + a+ ++  +++++l+  dk+i++
  EHT99990.1 207 KGALMVIGARPKMGKTTLYSQLAVNcAEVEQLPALMFSLEMPDKQIVE 254
                 79*****************99865516667889999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3763.07
//
Query:       EHT99991.1  [L=295]
Description: phage replication protein O [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-30  106.1   0.0      2e-30  105.2   0.0    1.4  1  Phage_rep_O  Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   1.1e-34     2e-30       1      95 []      20     114 ..      20     114 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 1.1e-34
  Phage_rep_O   1 rkadlddGYtrlanelleallrakltkrqlkillavirktYgfkkksdwisnsqlveltgisrtkvskalkeLirekviikegrkvgvnkniseW 95 
                  r+adlddGYtrlan lle+++ a+ltkrq+k+llav+r+tYg++k +d+i+nsq+++++++++++vs+a+ +L+ ++ +++ gr++g+nkn  eW
   EHT99991.1  20 RVADLDDGYTRLANMLLEEYAGADLTKRQFKVLLAVLRLTYGWNKPMDRIANSQIAQIARLPEKRVSEARVQLVGMNLLTQVGRSIGPNKNTAEW 114
                  689*******************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2336.32
//
Query:       EHT99992.1  [L=48]
Description: hypothetical protein CKS_1905 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00089   19.1   0.0     0.0011   18.9   0.0    1.2  1  DUF2740   Protein of unknown function (DUF2740)
     0.0082   16.2   0.1     0.0082   16.2   0.1    1.1  1  SpoIIID   Stage III sporulation protein D


Domain annotation for each model (and alignments):
>> DUF2740  Protein of unknown function (DUF2740)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-07    0.0011       9      39 ..       9      41 ..       1      46 [. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-07
     DUF2740  9 qDkLhkniLrDrfLssfkq..PGrfraeLekvk 39
                q  +hkn  rDrf+ s       r+ra Le  k
  EHT99992.1  9 QTAVHKNNTRDRFVRSVNPavAERMRAILEELK 41
                7889************9742257******9876 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.2e-07    0.0082      32      70 ..       8      48 .]       1      48 [] 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.2e-07
     SpoIIID 32 skstvhkDvte.r.LkkinkklakqvkevLeknkaeRhiRG 70
                 +  vhk+ t  r ++++n+++a++++++Le  k +   RG
  EHT99992.1  8 YQTAVHKNNTRdRfVRSVNPAVAERMRAILEELKRKEENRG 48
                56789**9985343789**************9998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 396.42
//
Query:       EHT99993.1  [L=50]
Description: hypothetical protein CKS_1904 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 440.92
//
Query:       EHT99994.1  [L=49]
Description: cI family phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       154  (0.00858944); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 416.90
//
Query:       EHT99995.1  [L=82]
Description: regulator of pectin lyase production [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-09   35.3   0.3    9.6e-09   35.1   0.3    1.1  1  Peptidase_S24  Peptidase S24-like
     0.0025   18.1   0.1      0.003   17.8   0.1    1.1  1  Phage_CI_C     Bacteriophage CI repressor C-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.3   1.1e-12   9.6e-09       7      69 ..       1      63 [.       1      64 [. 0.84

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.1e-12
                   TCCTXXTTXEEEEECTS.---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SST.TSTEEEECT CS
  Peptidase_S24  7 MeptlldGdlilVdkfs.epkrGdivvfrlpgeeeayiKrviglpgdrvllasnn.eypplying 69
                   Mep ++dG ++ Vd+++  + +G+++++  +g+    iK+++++pg++vl++s n ey++ + n+
     EHT99995.1  1 MEPVIPDGATVAVDTGNkRIVDGELYAI-NQGDL-KRIKQLYRKPGGKVLIRSINrEYDDEEANE 63
                   **************99945555555555.56665.9*******************77***99887 PP

>> Phage_CI_C  Bacteriophage CI repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   3.3e-07     0.003      40     101 ..       8      73 ..       3      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.3e-07
  Phage_CI_C  40 kklylvdkkeadvsdGk.wLvdieGrlsirelariPvkklrvsgdevsf...ecklddikvlgrvv 101
                  ++  vd+  + + dG+ + ++    + i++l+r P++k+ + + + ++   e + +d++++g v+
  EHT99995.1   8 GATVAVDTGNKRIVDGElYAINQGDLKRIKQLYRKPGGKVLIRSINREYddeEANENDVEIIGFVF 73 
                 566789**********835566556678************99887777733358899*****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 727.81
//
Query:       EHT99996.1  [L=51]
Description: hypothetical protein CKS_1901 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 451.20
//
Query:       EHT99997.1  [L=51]
Description: hypothetical protein CKS_1900 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-10   40.0   0.1      3e-10   39.9   0.1    1.0  1  DUF1482   Protein of unknown function (DUF1482)


Domain annotation for each model (and alignments):
>> DUF1482  Protein of unknown function (DUF1482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   1.7e-14     3e-10      10      51 ..       1      41 [.       1      46 [. 0.93

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.7e-14
     DUF1482 10 ylnggcedlvvgvynteqeClaameeQkiRnggCyPiedvid 51
                + ng+++d v+g y +++ C aa++eQ     +CyP+e +i 
  EHT99997.1  1 MANGDFQDAVLGIYGSQKLCEAAASEQTS-VTNCYPVETIIH 41
                679************************98.8********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 501.00
//
Query:       EHT99998.1  [L=196]
Description: hypothetical protein CKS_1899 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1602.50
//
Query:       EHT99999.1  [L=223]
Description: exodeoxyribonuclease X [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-19   70.3   0.0    2.5e-18   67.2   0.0    2.0  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   1.4e-22   2.5e-18       2     165 .]       4     151 ..       4     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 1.4e-22
                 EEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESSH CS
     RNase_T   2 viDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgflr 100
                 viD+Ettgl+   +  ++eia + i+ g   i ++++++vkp  +  +  e++++++it +m+++ap   ev+    ++++    +vahna fd   l 
  EHT99999.1   4 VIDTETTGLEG-GPETVVEIASVDIVDGV--ICNPMSDLVKPGVP--IGFEAMAIHHITEDMVEGAPLLSEVIG---RYMG-ADAYVAHNAKFDKAKL- 92 
                 8**********.8***************9..9999**********..***********************8877...7888.6689999977663333. PP

                 HHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS....TSSHHHHHHHHHHHH CS
     RNase_T 101 aadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr....aHrAldDaeataklf 165
                          +++   + ++t++l+++ l+e++++s+++l+ +lgl+        aHrAl+D+  ta+l+
  EHT99999.1  93 ---------PAM-NAPWICTAKLARSLLPEHKSHSNQYLRYSLGLKPEVPgglyAHRALYDCYVTAELL 151
                 .........223.45799***************************98877789*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1943.27
//
Query:       EHU00001.1  [L=222]
Description: hypothetical protein CKS_1896 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-08   32.5   0.1    1.3e-07   31.6   0.1    1.5  1  AAA_24        AAA domain
    6.2e-06   26.5   0.0    6.5e-05   23.2   0.0    2.3  2  AAA_22        AAA domain
     0.0013   19.1   0.0        1.2    9.5   0.0    2.6  3  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.037   14.7   0.3      0.079   13.6   0.2    1.6  1  Meiosis_expr  Meiosis-expressed


Domain annotation for each model (and alignments):
>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   2.8e-11   1.3e-07       4     182 ..       4     180 ..       1     194 [. 0.72

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.8e-11
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfi.....................dtekGlksldadkfpdieswedfldevvelaaeladyktlviDtideleelc 81 
                  +li G+sg+GK+++++++ p+ +++                       +++ ++ ++ + +   +we++ld++     + ++ ++l+iD  + +++  
  EHU00001.1   4 PVLILGDSGAGKSYSLRNFNPDDVMLlqcipkmlpfksagwklhgklLPDGSKQRGNVLRSD---NWETVLDTIYRM-VQSKTRRVLIIDDFQVVMQ-- 96 
                 689****************6666666699999998888888888885444444444455544...9********998.566779**********955.. PP

      AAA_24  82 laevirqnekaeskedkgdgkGygelaeefrrllkklqelrk..nvifiahektrkdedpegeakytrlepklgkktanelkeevDlvlranlkredkv 178
                  +++ r+ + ++ k        + e+a+ ++r++ + +el++   v+f ah+++ + + +  +  +t+ ++ l++k     ++ + +vlra      k+
  EHU00001.1  97 HENMNRAYQTGYAK--------FTEMADHIWRIIMAATELPDdfRVYFLAHTEETEGKIR--M--KTTGKM-LNEK--LTPEGYFSIVLRAIK----KD 176
                 67777777777777........*****************************998765544..2..222222.2222..233456777777554....34 PP

      AAA_24 179 gerv 182
                 g++v
  EHU00001.1 177 GKHV 180
                 4444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.5e-08   6.5e-05       8     112 ..       5     103 ..       2     128 .. 0.78
   2 ?   -1.4   0.0      0.59   2.6e+03      70      96 ..     146     182 ..     104     188 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.5e-08
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelka......erlsseellealeqalraravielliiDE 99 
                 +++ G sG+GK+++lr++               +v++ ++  ++   k+   +l  +l  ++++      + ++ e +l+++++ ++++ + ++liiD+
  EHU00001.1   5 VLILGDSGAGKSYSLRNFNPD------------DVMLLQCIPKMlPFKSAGWKLHGKLLPDGSKqrgnvlRSDNWETVLDTIYRMVQSKTR-RVLIIDD 90 
                 6899************99865............466666665555555555555555555555556667999*******************.******* PP

      AAA_22 100 aqhlrseealeeL 112
                 +q ++++e+++  
  EHU00001.1  91 FQVVMQHENMNRA 103
                 ***6577777765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.59
      AAA_22  70 a...........erlsseellealeqalraravielli 96 
                 +           e l+ e +++ + +a+++ ++ ++++
  EHU00001.1 146 KirmkttgkmlnEKLTPEGYFSIVLRAIKKDGK-HVFL 182
                 244444444444556677777777777777777.5554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00027       1.2      26      44 ..       4      22 ..       1      27 [. 0.87
   2 !    6.7   0.0    0.0019       8.7     117     146 ..      64      93 ..      28     105 .. 0.70
   3 ?   -2.6   0.0       1.4   6.1e+03      45      63 ..     170     188 ..     168     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00027
      AAA_16 26 lvllsGesGvGKsslvrel 44
                 vl+ G+sG GKs  +r +
  EHU00001.1  4 PVLILGDSGAGKSYSLRNF 22
                59***********999976 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
      AAA_16 117 srllellkrll.allsrderplvlvlDdlqw 146
                 s+ +e++ + + +  +++ r  vl++Dd+q 
  EHU00001.1  64 SDNWETVLDTIyRMVQSKTR-RVLIIDDFQV 93 
                 55666666666455566444.9********6 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.4
      AAA_16  45 lralekdggiflrgkcdql 63 
                 lra++kdg +++  k d++
  EHU00001.1 170 LRAIKKDGKHVFLIKGDDN 188
                 6788888878877777777 PP

>> Meiosis_expr  Meiosis-expressed
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.8e-05     0.079       2      57 ..      62     121 ..      61     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
  Meiosis_expr   2 sRakkWseeveeayRfqlagyrD...ekeykevkk.aeverWpetGfvkklqrkdgtyyY 57 
                    R+ +W+  ++  yR+ ++  r    + +++ v++ ++++r  +tG+ k ++ +d ++  
    EHU00001.1  62 LRSDNWETVLDTIYRMVQSKTRRvliIDDFQVVMQhENMNRAYQTGYAKFTEMADHIWRI 121
                   6999***********99999887333579******88999999***********999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1776.22
//
Query:       EHU00002.1  [L=243]
Description: hypothetical protein CKS_1895 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2062.13
//
Query:       EHU00003.1  [L=301]
Description: putative DNA methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-55  189.0   0.0    1.3e-55  188.9   0.0    1.0  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.9   0.0   7.5e-60   1.3e-55       1     260 []      37     281 ..      37     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 188.9 bits;  conditional E-value: 7.5e-60
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelre 94 
                      ++GgK++llpe+ +lip   gk+++epF+Ggg+Vf++   + ++ l++D+n+dlinly+ +++  ++++i e++k+++   l n+ e ++ +re
       EHU00003.1  37 WAGGKYSLLPELDRLIP--AGKRLIEPFVGGGSVFLNSD-KHERFLLADVNADLINLYQ-MLAVVPDSVIYEAMKAFRH--L-NDAENYTVIRE 123
                      9****************..689****************6.69*****************.66667*********97655..4.89********* PP

                      HHH....HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S- CS
  MethyltransfD12  95 efn.kkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPPY 187
                       fn +    ++ +e+a+ flylnr++f+gl+r+n  g fnv +g+yk p +++e+e+k +++k+    + ++ f  +l+ a   +d+vY+DPPY
       EHU00003.1 124 AFNaQ---RLDAVERAAAFLYLNRHCFNGLIRYNLDGFFNVGFGKYKAP-YFPEEEIKAFKRKAHACVFMNAGFRRTLALA-GDSDVVYCDPPY 212
                      ***55...5555568999*******************************.******************************9.6666******** PP

                      T.S...TS--GGGG.CS-HHHHHHHHHHHHHH.HHTT-EEEEEEESEESHHHHHHCTT...SEEEEECCCCHH CS
  MethyltransfD12 188 nprqytanytlyetlafsdedevrlaevlkslsskfgvkvllsnsfkdtklfrelyksYnnesileveelrai 260
                       p+  ta +t y   +fs + ++ lae +    +++g kv +sns   +  + ely++   + +++v+++rai
       EHU00003.1 213 EPLPGTAGFTNYAAGGFSWDSQIELAESCVAA-HQRGAKVVISNS--TAPRVIELYEQ-HGFTLHRVSARRAI 281
                      ***************************99999.7***********..9999*******.9999****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.32
# Mc/sec: 2785.62
//
Query:       EHU00004.1  [L=80]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-37  127.6   0.7    1.6e-37  127.4   0.7    1.0  1  DUF4060   Protein of unknown function (DUF4060)


Domain annotation for each model (and alignments):
>> DUF4060  Protein of unknown function (DUF4060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.7   8.8e-42   1.6e-37       1      73 []       4      77 ..       4      77 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 8.8e-42
     DUF4060  1 liirgdksplhlvaadaAlaaHaekyGe.grqkhptiYtvavrgkkvaVEVvtRresyVATvmvGvRkLtkLpg 73
                li+r++ksp++++a++aAlaaH+ k+G+ grqkh+t+Ytv v+g kv+VEVv+R++syVAT+m+GvRkL++Lp+
  EHU00004.1  4 LINRSKKSPIGRRACEAALAAHHAKFGDyGRQKHQTNYTVEVDGMKVTVEVVNRATSYVATAMIGVRKLRNLPA 77
                69**********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 704.90
//
Query:       EHU00005.1  [L=429]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-16   60.5   0.3    3.1e-16   59.5   0.3    1.5  1  Arm-DNA-bind_3   Arm DNA-binding domain
    1.1e-15   57.8   0.1    2.9e-15   56.5   0.0    1.7  3  Phage_integrase  Phage integrase family
    0.00071   19.8   0.1     0.0017   18.6   0.1    1.6  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.3   5.2e-20   3.1e-16       3      73 ..       8      90 ..       6      91 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 5.2e-20
  Arm-DNA-bind_3  3 dkaikaladsd.kklprd..GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                     k++++ ++++  ++ +d   L+l v+++G+k ++++yr         lG +p+vsla ARk+++e+r+l+a+G+DP+  kka
      EHU00005.1  8 PKKVENSKPKEtDYKLTDggSLYLLVKKNGTKAWRMNYRfngkqatlaLGVFPDVSLALARKRRDEARQLLADGVDPRVSKKA 90
                    578888776664444444899*****999*****************877******************************9998 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.8   1.1e+04     134     150 ..      70      86 ..      68      89 .. 0.80
   2 ?   -3.7   0.0       1.5     9e+03     117     138 ..     178     199 ..     170     200 .. 0.67
   3 !   56.5   0.0   4.9e-19   2.9e-15      22     170 ..     229     387 ..     209     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.8
                      HHHHHHHHHHHCTSHHH CS
  Phage_integrase 134 RhsfataLleagvdlrv 150
                      R+  a++Ll  gvd+rv
       EHU00005.1  70 RRDEARQLLADGVDPRV 86 
                      66678899999999886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.5
                      HHHHHCT-SSC--TTHHHHHHH CS
  Phage_integrase 117 raveeagiekpltpHtlRhsfa 138
                      r++ + gi +   +H+lR ++a
       EHU00005.1 178 RYAIQRGIVEYNPTHDLRGAIA 199
                      4455558888888899997766 PP

  == domain 3  score: 56.5 bits;  conditional E-value: 4.9e-19
                      HHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE............EEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTSBSSBET.. CS
  Phage_integrase  22 rdklllellyetGlRisEllsLrvkdldlengvilvh............eregKgskeravplseealellkellskaleeaeksellfask.. 101
                       +kl++ + + t +R sEl+  r+++++++   ++++            er  K++  ++vpls+ea  +l+ + + +     + el+f+    
       EHU00005.1 229 LTKLAVLFSLHTFVRSSELRHARWEEINFKTAMWTIPaqrkriegvkysERGAKMGSIHYVPLSNEAIDVLEAIKKIS----GEYELIFPGDsn 318
                      579999******************************************999999**********99999999988888....889*****9888 PP

                      TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHC.TSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase 102 rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleag.vdlrvvqkllGHssistt.qiYthva 170
                      + kp+s++tv+k ++ +++ ++++  +  H +R  +++aL e+g ++ ++v++ + H++ + +   Y+h+a
       EHU00005.1 319 PYKPMSENTVNKSLRIMGYDTQAD--ICLHGFRAMACSALTESGlWSRDAVERQMSHQERNEVrAAYVHLA 387
                      99******************9988..******************77999**************99****87 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.8e-07    0.0017       1      50 [.      99     150 ..      99     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.8e-07
                      ..HHHHHHHHHHHH..HHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHH CS
  Phage_int_SAM_3   1 tFsefleeWleeyk..prvkesTyatyksiiknhIlPyFgniklkkItpadi 50 
                      tF+  + eW +     p +ke T+ +  +  +nhI P++gn+++++++++d+
       EHU00005.1  99 TFQTIALEWHKGSIghPSWKEITRIKILREMENHIFPFIGNKPIDSLKTSDL 150
                      788888899888444799******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3550.79
//
Query:       EHU00006.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00006.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00006.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00006.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00006.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00006.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00006.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00006.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00006.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00006.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00006.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00006.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00006.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00006.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00006.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00006.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00006.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00006.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2473.82
//
Query:       EHU00007.1  [L=376]
Description: putative P4-type integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-19   68.9   0.1    6.6e-19   68.1   0.1    1.5  1  Arm-DNA-bind_3   Arm DNA-binding domain
    9.1e-17   61.4   1.0    1.8e-16   60.4   0.0    1.9  2  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
       0.14   12.5   0.0         19    5.7   0.0    2.7  3  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   1.1e-22   6.6e-19       1      74 []       3      88 ..       3      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.1e-22
  Arm-DNA-bind_3  1 LTdkaikaladsdkklprd.....GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekkae 74
                    LT+ +++++++sdk  p +     G++l +t sG+k+++++yr         lG yp+vsl+eAR++++e+r+l+a+ +DP+e++ka+
      EHU00007.1  3 LTELKVRNTKPSDK--PVKmtdgnGMHLLITTSGSKYWRFQYRfagkqkilaLGVYPEVSLSEARRRRDEARQLVANHVDPSEKRKAQ 88
                    899*****998883..3223469**************************9766*******************************9985 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.29   1.7e+03     104     117 ..     105     118 ..      61     188 .. 0.62
   2 !   60.4   0.0     3e-20   1.8e-16       9     158 ..     210     369 ..     205     372 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                      SB--HHHHHHHHHH CS
  Phage_integrase 104 kplsrqtvrkafkr 117
                      +++s++t ++  ++
       EHU00007.1 105 WHTSNRTWSDSHRT 118
                      33333333333333 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 3e-20
                      HHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE............EEECSSSSEEEEECTHHHHHHHHHHHHHHCH CS
  Phage_integrase   9 erllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvh............eregKgskeravplseealellkellskale 89 
                       +l++ le  +    ++++++l + t +R sEl+  r++++dl+n+ ++++            +r  K+++ + vpls +a  ll+el s +  
       EHU00007.1 210 PELMNRLEAyKGRGITQIAVQLTLLTFVRSSELRFARWSEVDLKNSLWTIPgerqplkgvkysARGAKMKTPHLVPLSTQAKALLEELHSIS-- 301
                      56666666655556678889******************************************99999************************9.. PP

                      CCTTTSBSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHC.TSHHHHHHHHT-S CS
  Phage_integrase  90 eaeksellfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleag.vdlrvvqkllGHs 158
                         ++el+f+s   ++kp+s++tv+ka++++++  ++e  + +H +R  +++aL+e+g ++ ++v++ + H+
       EHU00007.1 302 --GDKELMFISFigDDKPISENTVNKALRTMAYDMKVE--VCGHGFRTMACSALIESGlWSRDAVERQMSHQ 369
                      ..999*******99********************9999..******************67889999999997 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.5   8.7e+03      41      63 ..      96     118 ..      85     131 .. 0.64
   2 ?    5.7   0.0    0.0032        19      69      93 ..     161     185 ..     140     191 .. 0.83
   3 ?    3.6   0.0     0.014        86      54      76 ..     308     330 ..     297     332 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
                      --TTT--HHHHHHHHHHHHHTS- CS
  Phage_int_SAM_5  41 itfeeidkefleeFedYLkkkkg 63 
                      +tfe++ +++ ++ +++  ++++
       EHU00007.1  96 LTFEQVARQWHTSNRTWSDSHRT 118
                      67777777777766666644444 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0032
                      HHHHHHHHHHHHHHHHHTTS--S-H CS
  Phage_int_SAM_5  69 iskyfkklkavlnkAikegilkknp 93 
                      +s+  +++ av+++A+ + ++++np
       EHU00007.1 161 ASRLQQRITAVMRYAVHNALIEQNP 185
                      5666789****************** PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.014
                      HHHHHHHTS---HHHHHHHHHHH CS
  Phage_int_SAM_5  54 FedYLkkkkglsentiskyfkkl 76 
                      F+ ++ ++k++sent++k ++++
       EHU00007.1 308 FISFIGDDKPISENTVNKALRTM 330
                      88888889**********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3094.26
//
Query:       EHU00008.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00008.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00008.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00008.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00008.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 769.08
//
Query:       EHU00009.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00009.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1020.78
//
Query:       EHU00010.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-97  326.8   4.4    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.038   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.041   13.4   2.5      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.1   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.27   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.45   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.77    8.9   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.5    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.1    7.1   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  325.1   0.0  4.5e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00010.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.5e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00010.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00010.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00010.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00010.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00010.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00010.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00010.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU00010.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00010.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00010.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00010.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00010.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00010.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU00010.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00010.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00010.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00010.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00010.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU00010.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00010.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU00010.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU00010.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00010.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00010.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU00010.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00010.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00010.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU00010.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU00010.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00010.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00010.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00010.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00010.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1048  (0.0584528); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.39
# Mc/sec: 3983.93
//
Query:       EHU00011.1  [L=156]
Description: AsnC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-20   72.7   0.1    1.8e-20   72.2   0.1    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
      5e-18   64.8   0.3    7.7e-18   64.2   0.3    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
      6e-16   58.0   0.3      1e-15   57.2   0.3    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    1.8e-06   27.8   0.1    2.8e-06   27.2   0.1    1.4  1  MarR            MarR family
    1.9e-05   24.5   0.1      4e-05   23.5   0.1    1.5  1  HTH_Crp_2       Crp-like helix-turn-helix domain
    7.5e-05   22.6   0.1    0.00014   21.7   0.1    1.5  1  HTH_11          HTH domain
     0.0015   18.6   0.0     0.0025   17.8   0.0    1.4  1  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.022   14.6   0.0    1.3  1  MarR_2          MarR family
      0.023   14.5   0.0      0.042   13.7   0.0    1.3  1  HTH_IclR        IclR helix-turn-helix domain
      0.032   13.8   0.0      0.058   13.0   0.0    1.4  1  HTH_CodY        CodY helix-turn-helix domain
      0.079   12.8   0.0       0.16   11.9   0.0    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.14   12.4   0.0        0.2   11.8   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.1   1.2e-23   1.8e-20       1      48 []       3      50 ..       3      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 1.2e-23
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld+t+ kIL++Lq+++ri+++eLA+++g+S s+++r ++rLee+G+I+
  EHU00011.1  3 LDKTEMKILRVLQDDARITNQELADKIGMSASPCWRKVRRLEEQGVIQ 50
                79********************************************95 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.3   5.1e-21   7.7e-18       3      75 .]      71     143 ..      69     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 5.1e-21
                     EEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   3 vslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v ++ +++++ ++fe+++ +l+ Vv cy++ Gd+d+ll+vv+ dle + +f +  +++lp ++++++++vl++
      EHU00011.1  71 VVIDCHSEDEAKKFEQQVTALDDVVACYSIGGDADFLLQVVASDLETYAEFAMSVVRRLPRIKEMQSMFVLKE 143
                     5566555899*************************************************************96 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.3   6.9e-19     1e-15       1      42 []       3      44 ..       3      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 6.9e-19
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD++  kIL+ Lq daRi+++eLA+++G+S+s+++r vrrLe
     EHU00011.1  3 LDKTEMKILRVLQDDARITNQELADKIGMSASPCWRKVRRLE 44
                   8****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.9e-09   2.8e-06       3      58 ..       5      60 ..       3      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.9e-09
                HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  3 ltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                 t+++iLr l +   ++++eLa+k+g+s s   r ++rLe++G i+ ++   Dr++
  EHU00011.1  5 KTEMKILRVLQDDARITNQELADKIGMSASPCWRKVRRLEEQGVIQGYRAVLDRKK 60
                699*******************************************9999988886 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.6e-08     4e-05      19      63 ..      17      59 ..       2      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.6e-08
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEEES-HH CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglisrgrririldle 63
                + ++t++elA+ +G++ + + r  ++L+++g+i+  r   +ld++
  EHU00011.1 17 DARITNQELADKIGMSASPCWRKVRRLEEQGVIQGYR--AVLDRK 59
                4689******************************544..577776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   9.6e-08   0.00014       3      44 ..       8      48 ..       6      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.6e-08
      HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                 +il+ L + +  i+ +eLA+++++S +  +r +++Lee+gv
  EHU00011.1  8 MKILRVL-QDDARITNQELADKIGMSASPCWRKVRRLEEQGV 48
                699****.99989***************************94 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0025       7      56 ..       2      51 ..       1      54 [. 0.94

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
                HS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20  7 LahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                L++++ ++ilr L +++  t  ela+ +++s + + + +r Lee g + +
  EHU00011.1  2 LLDKTEMKILRVLQDDARITNQELADKIGMSASPCWRKVRRLEEQGVIQG 51
                7899******************************************9976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.5e-05     0.022       6      54 ..       6      52 ..       3      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  6 aqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                ++  +L +L +  +  +t +ela++ g+s s   r ++rL+++G ++  
  EHU00011.1  6 TEMKILRVLQDDAR--ITNQELADKIGMSASPCWRKVRRLEEQGVIQGY 52
                67889999999998..****************************99755 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.042       7      48 ..       9      49 ..       8      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                 iL+ l   ++  t++elA+++g++ S   R ++ L+e+G +
  EHU00011.1  9 KILRVLQDDAR-ITNQELADKIGMSASPCWRKVRRLEEQGVI 49
                79999999999.8**************999999999999976 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.9e-05     0.058       3      35 ..      18      50 ..      16      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
    HTH_CodY  3 GrLtaskiaDriGitrsvivnaLrkLesaGiie 35
                 r+t  ++aD+iG+  s     +r+Le  G+i 
  EHU00011.1 18 ARITNQELADKIGMSASPCWRKVRRLEEQGVIQ 50
                689999*************************97 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.16       6      53 ..       3      50 ..       3      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                HHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB  6 LseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVe 53
                L ++E+k+  +L    + t +e+a ++g + s + + +r+Le+ G+++
  EHU00011.1  3 LDKTEMKILRVLQDDARITNQELADKIGMSASPCWRKVRRLEEQGVIQ 50
                5689999999999********************************997 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014       0.2      13      52 ..      10      49 ..       1      55 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                    HHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 13 IYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                    I+++  + + +++++la  ++ s+s     +++Le++G +
      EHU00011.1 10 ILRVLQDDARITNQELADKIGMSASPCWRKVRRLEEQGVI 49
                    7788889999***************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1154.06
//
Query:       EHU00012.1  [L=133]
Description: hypothetical protein CKS_1882 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.4   0.0       0.21   11.4   0.0    1.5  1  DUF1317   Protein of unknown function (DUF1317)


Domain annotation for each model (and alignments):
>> DUF1317  Protein of unknown function (DUF1317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.2e-05      0.21      23      42 ..      86     105 ..      82     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.2e-05
     DUF1317  23 GWvfPGlkviknPlkAqrlA 42 
                 GWv+PG   +kn + A+  A
  EHU00012.1  86 GWVIPGVINTKNSFGAYVGA 105
                 9***************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1009.73
//
Query:       EHU00013.1  [L=266]
Description: hypothetical protein CKS_1880 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00011   21.5  26.2    0.00017   20.8  26.2    1.3  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
       0.17   11.8   1.5        0.3   11.0   0.1    2.0  2  Flavi_NS4A     Flavivirus non-structural protein NS4A


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  26.2   1.9e-08   0.00017     163     336 ..      53     242 ..      18     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.9e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 163 llllilllllslvfirhelfgpatsvgllplpsvla................llfflfGalladaddrdrnlsrglkislllsllllalillalfg 242
                    +++l +l+l++l++ ++++++ +  ++++ +  +la                ++ff++Ga++     r +  +r   + +ll+ ll++l +l+ ++
     EHU00013.1  53 AWYLYGLALYFLCAKWFQHYKIPLLIVAA-VLNYLAveksipfwgpqslaqyFIFFVLGAFWWAPMLRLSEGRRENRLPWLLLGLLAVLQGLLDLN 147
                    45555666666666666665444444433.3344444666666666666677*****************999999999999999999999999999 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx...xxxxx RF
  Acyl_transf_3 243 qtdggglvasvliqsaslllvslgimllllllfalpsrsafkllrylgkiSygiYliHlpllmllqkllrdw.............gln...lgevl 322
                    +                l+l++++i++ + ++++l ++    +l++ g+ ++ +Y+iH +++ +++++ + +             +l+   +++v+
     EHU00013.1 148 SR---------------LFLCLIAILASVAACRWLSQLGCMAWLNWTGRHTLPLYIIHRIFIEYFGMTAILYaqrhqlfeltgfsWLWaclYPPVM 228
                    99...............7777777777777777777777666******************************655555555543333377777777 PP

                    xxxxxxxxxxxxxx RF
  Acyl_transf_3 323 llvlllvvsvivsv 336
                    + +++l+++v++s+
     EHU00013.1 229 VTICALCSMVVWSL 242
                    77777777777765 PP

>> Flavi_NS4A  Flavivirus non-structural protein NS4A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.4e-05       0.3      52     141 ..      47     140 ..      27     143 .. 0.76
   2 ?   -0.8   0.1      0.14   1.3e+03      89     114 ..     175     201 ..     147     209 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
  Flavi_NS4A  52 mllilialltsGvvlfflsgkGlsktsialltviassallflasvkpthiaavillefvlmvl....lipepdrqrsiqdnqlaylviGlltlv 141
                 +l +  a    G++l+fl +k + +  i ll+v+a    l +    p +   ++  +f+++vl      p        ++n+l +l++Gll ++
  EHU00013.1  47 FLAMSTAWYLYGLALYFLCAKWFQHYKIPLLIVAAVLNYLAVEKSIPFWGPQSLAQYFIFFVLgafwWAPMLRLSEGRRENRLPWLLLGLLAVL 140
                 444555666789**********************998888888889999988887666665552212345556667788999999999999876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.14
  Flavi_NS4A  89 allflas.vkpthiaavillefvlmvl 114
                  l + +    p +i   i++e++ m  
  EHU00013.1 175 WLNWTGRhTLPLYIIHRIFIEYFGMTA 201
                 233443213477777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2276.70
//
Query:       EHU00014.1  [L=1314]
Description: transcriptional repressor/proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.9e-116  388.0   0.6   7.9e-116  387.3   0.6    1.2  1  Aldedh          Aldehyde dehydrogenase family
    2.3e-99  332.7   0.0    4.6e-99  331.7   0.0    1.5  1  Pro_dh          Proline dehydrogenase
    3.5e-46  156.3   0.0    9.4e-46  155.0   0.0    1.8  1  Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
    1.3e-16   60.6  11.8    2.6e-16   59.6   4.3    3.9  3  PRODH           Proline utilization A proline dehydrogenase N
  ------ inclusion threshold ------
       0.23   11.4   1.1       0.94    9.5   0.0    2.8  3  RHH_1           Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.3   0.6  2.2e-119  7.9e-116       9     452 ..     657    1101 ..     651    1108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 387.3 bits;  conditional E-value: 2.2e-119
                  EEEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh    9 ievinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaela 104 
                   +v+nPa   +v+++v++a++++v  a++aA +a + w ++p++eRa+iL++aa+l+e++ ++l  l+++e+Gk++++a aev+ea+d+l yya+ +
  EHU00014.1  657 EPVLNPAvPADVVGTVRQASEQEVSLAIEAAVNAGPIWFATPPQERAAILERAAQLMESQLQQLLGLLVREAGKTYNNAIAEVREAVDFLYYYAGIV 753 
                  6899***9***************************************************************************************** PP

                  HH.HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh  105 ek.legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200 
                  ++  + e+            ++PlG v++I+PWNfPl+++++++a+alaaGN+v+ KPae+tpl+a+  ++++  ag+P+gvl++++g+g++vg++l
  EHU00014.1  754 RHdFDNET------------HRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVNILLSAGVPAGVLQLLPGQGETVGAQL 838 
                  **555454............89*************************************************************************** PP

                  HH-TTESEEEEES-HHHHHHHHHHHHCTT......SEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHH CS
      Aldedh  201 vehpevdkvsftGstevgrkiakaaaknl......krvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklve 291 
                  + +++v+ v+ftGst+v+  ++++ a++l      +++++E+GG n++iv ++a  +++v +iv++af +aGQ+C+a + l vqe+++d+ ++ l  
  EHU00014.1  839 TGDERVRGVMFTGSTAVATLLQRNLAGRLdpqgrpTPLIAETGGMNAMIVDSSALTEQVVVDIVASAFDSAGQRCSALRLLCVQEDVADHTLKMLRG 935 
                  ************************776765666669************************************************************* PP

                  HHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT...E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SH CS
      Aldedh  292 aakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge...reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..de 383 
                  a+++ ++g+p++ +td+GP+i++++ +++e++++  +++g k+    +   +++++ ++g +v+Pt+++ +++ ++ +++E+FGPVl v++f   ++
  EHU00014.1  936 AMAECRMGNPERLSTDIGPVIDQEAKANIERHIQAMRNKGFKVYQTAQdnpQDSKEWATGTLVKPTLIE-LDKVSD-LTQEVFGPVLHVVRFTrsNL 1030
                  *******************************************997766788888999***********.555555.5679***********86689 PP

                  HHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT.SEB--CGGGEES.-BSHHHH CS
      Aldedh  384 eeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaea.lpfgGvkqSglG.reggkeg 452 
                   +++e  N+t yGL+ gv+t+  e++ +v+++ ++Gn+y+N+ ++ga+   +pfgG + Sg+G + gg+ +
  EHU00014.1 1031 PQIVEQINATGYGLTLGVHTRIDETITQVTASAKVGNLYVNRNMVGAVVGvQPFGGEGLSGTGpKAGGPLY 1101
                  9**************************************************************66666655 PP

>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.7   0.0  1.3e-102   4.6e-99       3     296 .]     266     565 ..     264     565 .. 0.98

  Alignments for each domain:
  == domain 1  score: 331.7 bits;  conditional E-value: 1.3e-102
                 HHHHHHHHTTEEEEEEES-SS--SHHHHHHHHHHHHHHHHHHHHHHCCS-TTCC-SEEE-GGG..TT-SGGGHHHHHHHHHHHHHHHHHHHHHTT-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh   3 ktieklkkrgvrlsldllgeavlteedadryleayleaiksiekaskalkvleapgvsvklsa..prletaeeeevmeelverlrtlakeakelgvrll 99 
                  +++kl+++g+r+s+d+lgea+lt++da++yl +y++ai++i+kas+ +  +e pg+s+klsa  pr+++a++++vm+el+  l++l+ +a++++++++
  EHU00014.1 266 ANARKLEEKGFRYSYDMLGEAALTASDAKAYLVSYQQAIHAIGKASNGRGIYEGPGISIKLSAlhPRYSRAQYDRVMDELYTLLKSLTLLARSYDIGIN 364
                 68899**89**************************************9999************************************************ PP

                 E----GGGHHHHHHHHHHHHHSCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHHHTT-S.-SB-SSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
      Pro_dh 100 iDaEeaklqeltlelfrklnkepelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraqelgye.spifdtkeeTDanYd 197
                 iDaEea+++el+l+++++l+ epel++w+++g+++QaY+k+++ v+++l++lA+r+++rl+++LV+GAY+dsE+kraq +g+e +p++++k  TD +Y 
  EHU00014.1 365 IDAEEADRLELSLDMLERLCFEPELEGWNGIGFVIQAYMKRCPFVIDELIDLAQRSRRRLMIRLVKGAYWDSEIKRAQMEGLEgYPVYTRKVYTDISYL 463
                 *************************************************************************************************** PP

                 HHHHHHHHTTTTEEEEEE-S-HHHHHHHHHHHHHT..T--GGGEEEEEETTSSHHHHHHH......HHTTS-EEEEEEECEHHHHHHHHHHHHHHHH-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 198 avaelllenrdeiypavAsHNaesvakalalaeelgqekeksevefqqLlGMadnlsfal......akagynvrkYlPvGpveevlpYLvRRleENtan 290
                 a+a++ll+  + iyp++A+HNa+++a++++la ++       ++efq+L+GM++ l++++      +k ++++r+Y+PvG++e++l+YLvRRl+EN+an
  EHU00014.1 464 ACARKLLAVPNLIYPQFATHNAHTLAAIYQLAGNN---YYPGQYEFQCLHGMGEPLYEQVvgkvadGKLNRPCRIYAPVGTHETLLAYLVRRLLENGAN 559
                 ***********************************...99**********************9999999999*************************** PP

                 T-HHHH CS
                 xxxxxx RF
      Pro_dh 291 ssftrr 296
                 +sf++r
  EHU00014.1 560 TSFVNR 565
                 ***986 PP

>> Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   2.6e-49   9.4e-46       1     112 []     143     255 ..     143     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 2.6e-49
                     -HHHHHHHTT--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHTTTTS-HHHHHHHHHHCTT-GGG----------..-SS----HHHHHHHHHH-H CS
  Pro_dh-DNA_bdg   1 lleallqeyslsseEGvaLmcLAEaLLRvPdaatadaLirdklakgdwkehlgksesllvnaatwgLlltgkll.eekeeeleealkklvkrlge 94 
                     ++++llqe+slss+EGvaLmcLAEaLLR+Pd+ t+daLirdk+++g+w++hlg+s s++vnaatwgLl+tg+l+ +++e++l+++l++++ ++ge
      EHU00014.1 143 MVQSLLQEFSLSSQEGVALMCLAEALLRIPDKPTRDALIRDKISNGNWQSHLGRSPSMFVNAATWGLLFTGRLVsTHNEANLSRSLNRIIGKSGE 237
                     5899**********************************************************************99999**************** PP

                     HHHHHHHHHHHHHHHHH- CS
  Pro_dh-DNA_bdg  95 pvirkaveqamkllgeqF 112
                     p+irk+v++am+l+geqF
      EHU00014.1 238 PLIRKGVDMAMRLMGEQF 255
                     *****************9 PP

>> PRODH  Proline utilization A proline dehydrogenase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   4.3   7.3e-20   2.6e-16       1      48 []      85     132 ..      85     132 .. 0.99
   2 ?   -3.5   0.0       3.7   1.3e+04      18      33 ..     143     158 ..     142     168 .. 0.76
   3 ?    3.6   0.1     0.022        78      28      45 ..     697     714 ..     695     715 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 7.3e-20
       PRODH   1 SpLRqaItaayRrpEaecVapLleaArlpeaeraairalArkLvealR 48 
                 S+ R a+taa+RrpE+++V++Lle+Arlp+++++++r+lA  L+++lR
  EHU00014.1  85 SVARSAVTAAWRRPETDAVPMLLEQARLPAPLAEKTRQLAFTLAKKLR 132
                 789********************************************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.7
       PRODH  18 cVapLleaArlpeaer 33 
                 +V+ Ll++ +l+ +e 
  EHU00014.1 143 MVQSLLQEFSLSSQEG 158
                 5999***999998875 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.022
       PRODH  28 lpeaeraairalArkLve 45 
                  p++eraai ++A++L e
  EHU00014.1 697 TPPQERAAILERAAQLME 714
                 599************976 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00026      0.94       4      38 ..       8      42 ..       7      43 .. 0.94
   2 ?   -3.1   0.1       2.6   9.2e+03       3      15 ..     362     374 ..     361     375 .. 0.85
   3 ?   -4.0   0.2       4.6   1.7e+04      14      25 ..     410     421 ..     410     424 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00026
                EEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH CS
       RHH_1  4 irldeellerLdelarrrgrSrSelIReAlreyle 38
                ++lde +  r+   a +++r+ ++lI++A+ +yl 
  EHU00014.1  8 VKLDEATRSRIKLAAQKMDRTPHWLIKQAIFNYLV 42
                89****************************99986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
                 EEEEEHHHHHHHH CS
       RHH_1   3 sirldeellerLd 15 
                  i +d+e+++rL+
  EHU00014.1 362 GINIDAEEADRLE 374
                 5789*******97 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 4.6
                 HHHHHHHHTSSH CS
       RHH_1  14 LdelarrrgrSr 25 
                 +del++  +rSr
  EHU00014.1 410 IDELIDLAQRSR 421
                 799999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 8542.29
//
Query:       EHU00015.1  [L=494]
Description: proline:sodium symporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-136  454.8  28.9   3.8e-136  454.2  28.9    1.3  1  SSF        Sodium:solute symporter family
     0.0036   17.0   1.0      0.018   14.8   1.0    2.3  1  DUF4748    Domain of unknown function (DUF4748)
  ------ inclusion threshold ------
      0.045   13.3   0.2      0.045   13.3   0.2    2.1  2  4HB_MCP_1  Four helix bundle sensory module for signal transd


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.2  28.9  6.4e-140  3.8e-136       1     406 []      35     437 ..      35     437 .. 0.97

  Alignments for each domain:
  == domain 1  score: 454.2 bits;  conditional E-value: 6.4e-140
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlr.....nagalTlpdylskRfkgkr.ilvylsalsl 93 
                 y+l+grsl+++v++ls++as++s+++++Gl+Ga+++sG++++++++g++++++l+++++a+rlr     + +alTlpd+++ Rf++++ il+++sa+++
  EHU00015.1  35 YILGGRSLGSVVTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLIIGAWLNWKIVAGRLRvqtehHDNALTLPDFFTSRFEDRSkILRVISAVVI 133
                 9******************************************************************9999***************999********** PP

         SSF  94 llvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltp 192
                 l+++t+++++++v+ga+l+e+++G++y ta++++aa+t+lYt++GG+lAv++tdt+qa lm+++++++++iv+++vGgl+  +  +++ +++  d++++
  EHU00015.1 134 LMFFTIYCASGVVAGARLFESTFGMDYATALWAGAAATILYTLVGGFLAVSWTDTVQASLMIFALILTPLIVIMAVGGLSDSLAVIQAKSTENLDMFKG 232
                 *****************************************************************************8877766666666666999999 PP

         SSF 193 dslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpn 291
                  +       +++lsl lg++lG++g+phil+Rf+aa+++++i++++++++ ++il+l+g++++++f+i+++  +p  +  + ++ +++++eL+  l+++
  EHU00015.1 233 LN------VVAVLSL-LGWGLGYFGQPHILARFMAADSHRSIRTARRIGMAWMILCLAGAVAVGFFGIAYFQNNPGEAAGVTQNGERVFIELARILFNP 324
                 99......5999999.***********************************************************8888899***************** PP

         SSF 292 llaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalf 390
                 ++aG+ll+++lAa+mstl+++ll++ssa+t+DlYk ++rk+ a++kelv+v+r++vl v+ +ai+la+++e++ vl lv++a+ag+++a+++v+l+++ 
  EHU00015.1 325 WVAGILLSAILAAVMSTLSCQLLVCSSALTEDLYKGFLRKN-ASQKELVWVGRLMVLLVALIAIALAANPENR-VLGLVSYAWAGFGAAFAPVVLFGVC 421
                 *****************************************.*******************************.************************* PP

         SSF 391 wkrvneqGAlagliiG 406
                 wkr+n++GAlag+++G
  EHU00015.1 422 WKRMNRNGALAGMVVG 437
                 **************99 PP

>> DUF4748  Domain of unknown function (DUF4748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.0   3.1e-06     0.018       1      19 [.     269     287 ..     269     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-06
     DUF4748   1 TvksiwlgWgslcvaGiga 19 
                 T+++i+++W++lc aG+ a
  EHU00015.1 269 TARRIGMAWMILCLAGAVA 287
                 789*************987 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   7.5e-06     0.045       2      35 ..       1      34 [.       1      36 [. 0.94
   2 ?   -4.3   1.1       1.8   1.1e+04      10      26 ..     197     213 ..     194     222 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-06
   4HB_MCP_1  2 lkirkKLillflllallliivGvvGlyslkkink 35
                +++++ +++ fl+ +l ++++G++ ++s+k+ ++
  EHU00015.1  1 MTVSTPMLVTFLIYILGMVLIGFIAWRSTKNFDD 34
                89***************************99765 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.8
   4HB_MCP_1  10 llflllallliivGvvG 26 
                  l+l+ ++++++vG+++
  EHU00015.1 197 ALILTPLIVIMAVGGLS 213
                 45788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 3250.78
//
Query:       EHU00016.1  [L=275]
Description: ferrous iron transport permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-69  233.1  16.6      5e-69  232.8  16.6    1.0  1  FTR1             Iron permease FTR1 family
    4.6e-05   23.5  10.0    4.6e-05   23.5  10.0    2.1  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
  ------ inclusion threshold ------
        0.2   11.8   7.6        2.3    8.4   2.8    2.5  2  Popeye           Popeye protein conserved region
        1.5    8.7   9.0        0.2   11.6   0.9    2.8  3  DUF4271          Domain of unknown function (DUF4271)


Domain annotation for each model (and alignments):
>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.8  16.6   1.1e-72     5e-69       1     286 [.       1     256 [.       1     268 [. 0.96

  Alignments for each domain:
  == domain 1  score: 232.8 bits;  conditional E-value: 1.1e-72
        FTR1   1 lfaiflvvlregleaslivsvllallkqtqretdklqvwagialavllalaigqafasitaalqkdkalieeellegvlsliavvviswmilwmrrvgk 99 
                 +f  fl++lreglea+livs + ++lk+tqr++    +wag++ a +l+l++g++++++t+++++    +++el+eg++++iavv+++ m++wmrrv++
  EHU00016.1   1 MFVPFLIMLREGLEAALIVSLIASYLKRTQRTQWFPAMWAGVFIAAALCLGLGIFINQTTGEFPQ----KQQELFEGIVAVIAVVILTSMVFWMRRVAR 95 
                 8999************************************************************8....****************************** PP

        FTR1 100 klkeeveqklakavaeiknrekaaqkgekgsekwalfilsFlivlREGlEavLfvaaivaytvkrvsalilgvvlGaliavvlglliyrglvklslqsf 198
                 ++k e+e  +++a+ +              + + al++++Fl+v REGlE v+f+ a+++++v    a++lg+vlG+++avvlg+liy+g+++l+ + f
  EHU00016.1  96 NIKRELEHAVDEALHKS------------AGGGLALVMMVFLAVAREGLESVFFLLAAFTQDV--GYAPPLGAVLGLATAVVLGMLIYWGGLRLNMAHF 180
                 *************9855............5779******************************..59******************************** PP

        FTR1 199 filegflLllvaagLfsvgtlellekaeacngkdyiefkkskslskisllslllvaflaveregleivlaliGwantgplglivyaav 286
                 f ++++++llvaagL +++  +++e++++ n++++ +f++s+ ls++sl++++l+++l++++ +   v+ +++w  +         ++
  EHU00016.1 181 FRWTSMFILLVAAGLAAGAIRAFHEAGLW-NHFQQVAFDMSPILSTHSLFGTVLEGMLGYQEAP--SVSEVAVWLLY---------LI 256
                 *****************************.**********************************..********999.........33 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5  10.0     1e-08   4.6e-05       8     153 ..      31     173 ..      30     185 .. 0.88
   2 ?    1.7   0.9     0.051   2.3e+02      54     132 ..     189     268 ..     178     274 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1e-08
  Abhydrolase_9_N   8 RtwlfqgvvsGlsaaiGYglGvllawlvrrllrlpepsrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvall 101
                      Rt +f ++ +G+ +a++ +lG+ +  ++++     e +++ ++ ++ ++av+a+v+l+ ++++  r  r++++ ++ +  +a++  ++  +al+
       EHU00016.1  31 RTQWFPAMWAGVFIAAALCLGLGI--FINQTT--GEFPQKQQELFEGIVAVIAVVILTSMVFWMRRVARNIKRELEHAVDEALHKSAGGGLALV 120
                      899********9877777666544..333332..356789999*************************************************** PP

  Abhydrolase_9_N 102 vfalllllgrllralvrllarllgrv.lprrvaavlgvlvvvvlvvllvdgvv 153
                      ++++l ++ ++l+ ++ lla+  + v + +++ avlg++++vvl +l+  g +
       EHU00016.1 121 MMVFLAVAREGLESVFFLLAAFTQDVgYAPPLGAVLGLATAVVLGMLIYWGGL 173
                      **************************99999*************999987765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.051
  Abhydrolase_9_N  54 lalavvalvvllvalvlaarwQrelralmgaep.lgaaeyllvllvallvfalllllgrllralvrllarllgrvlprrv 132
                      l++a+ ++++++ a+  a  w + ++ +++++p l++ + + ++l ++l +     + ++  +l+ l+ +ll  v+p+r+
       EHU00016.1 189 LLVAAGLAAGAIRAFHEAGLWNHFQQVAFDMSPiLSTHSLFGTVLEGMLGYQEAPSVSEVAVWLLYLIPALLLFVMPARA 268
                      55666677778888888888999999999999956666667777888888888888888888887777777777777766 PP

>> Popeye  Popeye protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0039        17      46      92 ..      29      75 ..       7     101 .. 0.84
   2 ?    8.4   2.8   0.00052       2.3       4      69 ..     135     196 ..     132     217 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0039
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye 46 lvvCaldiflWnlllvlinlaqllyllyklrpvkfekeleelYkklF 92
                ++   +   +W  +++++ l+  l ++++ +  +f+++ +el++ + 
  EHU00016.1 29 TQRTQWFPAMWAGVFIAAALCLGLGIFINQTTGEFPQKQQELFEGIV 75
                5555666779********************************98765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00052
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye   4 llfhlanillllaflapsgvlgllvlrsllvlGflllalwawlvvCaldiflWnlllvlinlaqll 69 
                 ++f la +   ++++ p g   +l l +++vlG+l  ++w+ l + +   f W+++++l+  a l+
  EHU00016.1 135 VFFLLAAFTQDVGYAPPLG--AVLGLATAVVLGML--IYWGGLRLNMAHFFRWTSMFILLVAAGLA 196
                 4555555555556655555..45555666666655..68*******************99877665 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   4.4e-05       0.2      47     146 ..      37     128 ..      23     143 .. 0.73
   2 ?    4.7   2.7    0.0056        25       5     114 ..      77     181 ..      74     192 .. 0.62
   3 ?   -1.3   0.9      0.39   1.8e+03      83      83 ..     246     246 ..     179     265 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
     DUF4271  47 esrfqlflllltclllglllylllsefgslfgsylassllllliiflilllylllKlllykllgwlFfdkkkirqwifsylsylsllglllfplvlllv 145
                  ++  +f+ +  cl lg+++ +++ ef         +  + l+  +++++++++l  +++++     ++k++ ++ +   l  ++  gl+l+++v+l v
  EHU00016.1  37 AMWAGVFIAAALCLGLGIFINQTTGEFP--------QKQQELFEGIVAVIAVVILTSMVFWMRRVARNIKRELEHAVDEALHKSAGGGLALVMMVFLAV 127
                 56778999999**************944........455556666666666667777777777778888888888888888888888888888777766 PP

     DUF4271 146 y 146
                  
  EHU00016.1 128 A 128
                 4 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0056
     DUF4271   5 lllcflllalaksrfrkffsrllklffnnkereslfkee.tksesrfqlflllltclllglllylllsefgslfgsylassllllliiflilllylllK 102
                 ++++ +l +++++   ++ +r +k  + +   e l k+   +    +++fl +    l +++++l+  + +  +   + ++l  +l ++++++l +l+ 
  EHU00016.1  77 VIAVVILTSMVFW--MRRVARNIKRELEHAVDEALHKSAgGGLALVMMVFLAVAREGLESVFFLLAAFTQDVGY---A-PPLGAVLGLATAVVLGMLIY 169
                 4444455555555..67888899999888887777776547777777888888888888877777777733322...2.55555555555555555555 PP

     DUF4271 103 lllykllgwlFf 114
                 ++ ++l    Ff
  EHU00016.1 170 WGGLRLNMAHFF 181
                 555555444444 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.39
     DUF4271  83 s 83 
                 s
  EHU00016.1 246 S 246
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1909.25
//
Query:       EHU00017.1  [L=373]
Description: component of a tripartite ferrous iron transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-43  149.0   4.7    2.5e-43  148.6   4.7    1.1  1  Peptidase_M75   Imelysin
      2e-23   82.5   0.0    3.3e-23   81.8   0.0    1.3  1  Cupredoxin_1    Cupredoxin-like domain
  ------ inclusion threshold ------
      0.038   14.5   0.1       0.17   12.4   0.0    2.2  2  DUF1843         Domain of unknown function (DUF1843)
      0.096   12.8   0.0          1    9.5   0.0    2.4  2  DUF4363         Domain of unknown function (DUF4363)
       0.17   11.7   2.5          8    6.3   0.1    2.7  2  Apolipoprotein  Apolipoprotein A1/A4/E domain


Domain annotation for each model (and alignments):
>> Peptidase_M75  Imelysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   4.7     7e-47   2.5e-43       2     287 ..     134     365 ..     133     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.6 bits;  conditional E-value: 7e-47
                    HHHHHHHHHH.HHHHHHHHHHHHHCB-HHHHHHHHHHHHHHHHHHHHHCCG-TCHHHH.HHHHH-SS-TCHHHHHHHHHHHHHSTT--TCCCCGSG CS
  Peptidase_M75   2 laaYedllta.aeaLqsavdallaaptaanleaAreawlaarvayeqsevfrfgpvdawegqvnaWPldeglldyvvdardadedaitpellasea 96 
                    + aY++++t+ + +L+s ++a+++a++a+++++A++ ++ +r++ye++e++++                +++ld  +dar   ed+++++   +e+
     EHU00017.1 134 INAYKAYVTEeVSQLVSGTQAFTDAVKAGDVAKAKALFASTRQHYERIEPIAE---------------LFSDLDGRIDAR---EDDYEKK---AED 208
                    679**************************************************...............9***********...8899999...567 PP

                    GGGSHHHHHHHHHCCTTSH...TTTS..HHHHHHHHHHHHHHHHHHHHHHHT...CHHHHHCCHSHHHHHHHHHCCHHHHHHHHHHCTTHHHHTSC CS
  Peptidase_M75  97 nvvtGfhaiEflLfgqdlgagtrpvtdyleylkavaallvsdlqelaaawqpetegnyraaltasekealeeilngmgslldelaserikvplsap 192
                      +tGfh++E+ Lf+++ +         ++ ++  a++l++d+++l++++ + ++              +++++ g++ l++e+a ++i+      
     EHU00017.1 209 PKFTGFHRLEKALFADN-T---------TKDMAGYADQLNHDVHDLQQRVSELAF-------------PPAKVVGGAAGLIEEVAATKIS------ 275
                    99***************.7.........999********************8877.............*********************9...... PP

                    HHCHSTTTTTT-HHHHHHHHHHHHHHHHCTS.SCCHHHHHCCCSCHHHHHHHHHHHHHHHHHHCSSS....SGGGGCT-HHHHHHHHHHHHHHHHH CS
  Peptidase_M75 193 dpedeedcfsdnsladiqanleGirnvylgesgaslrdlveaadpalaeqldaalaaleaalaaiaa....pfdqaigdaegraliqaaidaLsel 284
                       +eed++s+++l+d++an++G+++++     ++lr+++++a+p+l +++da++ +++a l+++++    +  +++++a++ al    i+aL+e 
     EHU00017.1 276 ---GEEDRYSRTDLWDFRANVDGAQKIV-----TLLRPVLQQANPQLLAKIDANFSKVDAILDKYRTqqgyESYEKLTQADRTALKGP-ITALAED 362
                    ...*************************.....9*******************************77464433377788887777555.9999998 PP

                    HHH CS
  Peptidase_M75 285 tsl 287
                    +sl
     EHU00017.1 363 LSL 365
                    876 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   9.2e-27   3.3e-23       3     104 .]       9     112 ..       8     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 9.2e-27
  Cupredoxin_1   3 aalavllllsskaaaaaektveitvkdggfePskievkagekvklkiknkdktpeefesed....lgeekvlapgktttitiaplkpGeYeftcdmh 95 
                   a+la ll+ls ++ aaa ++v++tv+d+++eP +++v+ag+ +++ ikn+++++ e+e+ +    ++e++++apg ++++t a+l++GeY++tc++ 
    EHU00017.1   9 AVLASLLALSGSSLAAAIPQVSVTVTDKQCEPMSVTVQAGK-TQFLIKNNSQKALEWEILKgvmvVEERENIAPGFSQKLT-ANLEAGEYDMTCGLL 103
                   57889999999*****************************9.**********************999**************.7************** PP

  Cupredoxin_1  96 mdakGkliV 104
                    ++kGkliV
    EHU00017.1 104 TNPKGKLIV 112
                   ********9 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-05      0.17       6      41 ..     154     189 ..     152     194 .. 0.86
   2 ?   -2.9   0.0       2.8     1e+04      20      43 ..     228     251 ..     227     253 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
     DUF1843   6 aiqqAiasGDLakMKalaaqaeqqLaeygdiasale 41 
                 a ++A++ GD+ak Kal a  +q+ +  + ia + +
  EHU00017.1 154 AFTDAVKAGDVAKAKALFASTRQHYERIEPIAELFS 189
                 789*********************888777776655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
     DUF1843  20 KalaaqaeqqLaeygdiasaleqL 43 
                 K +a +a+q   +  d+++ +++L
  EHU00017.1 228 KDMAGYADQLNHDVHDLQQRVSEL 251
                 556777888877888888888777 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00028         1       6      56 ..     140     190 ..     137     193 .. 0.94
   2 ?   -0.2   0.0      0.31   1.1e+03      59      90 ..     314     345 ..     310     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00028
     DUF4363   6 ylkkstdelsekleeleeaienedweeakekleelekeWekkkkklsifie 56 
                 y++  +++l + ++   +a++++d ++ak  ++++++++e  +++ ++f +
  EHU00017.1 140 YVTEEVSQLVSGTQAFTDAVKAGDVAKAKALFASTRQHYERIEPIAELFSD 190
                 99999****************************************999987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.31
     DUF4363  59 eldeietslaklkayietedkeealaelaelk 90 
                  l +i+ +++k+ a +++  +++ +++ ++l 
  EHU00017.1 314 LLAKIDANFSKVDAILDKYRTQQGYESYEKLT 345
                 57899999999999999999999999988875 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0022         8     103     169 ..     136     208 ..     117     211 .. 0.82
   2 ?    4.4   0.3    0.0083        30      57     149 ..     230     333 ..     222     364 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
                     HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..---......--SSSHHHHHHHTS-TTSHH CS
  Apolipoprotein 103 elrerlerhvealkarlapyveelrqklaerleelkeslaphaeeve......erlssrveelrekleeqaee 169
                      ++  + ++v++l +  +++++ ++++  +++++l  s ++h e++e      + l+ r+++ ++ +e++ae+
      EHU00017.1 136 AYKAYVTEEVSQLVSGTQAFTDAVKAGDVAKAKALFASTRQHYERIEpiaelfSDLDGRIDAREDDYEKKAED 208
                     56667788999*******************************8866655555588888888888888888876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0083
                     HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHH...........HHHHHHHHCHHHHHHHHHHHHHHHHHHH- CS
  Apolipoprotein  57 rdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerh...........vealkarlapyveelrqklaerleelkes 140
                     ++    ql+  + +l+qr+++++   ++ +  +a  ++e  a++  + ++r +r            ++++ + l p ++++  +l +++++  ++
      EHU00017.1 230 MAGYADQLNHDVHDLQQRVSELAFPPAKVVGGAAGLIEEVAATKISGEEDRYSRTdlwdfranvdgAQKIVTLLRPVLQQANPQLLAKIDANFSK 324
                     44444444444444444444444444444444444444444444444444444444444444444456666666666666666666666666666 PP

                     ----..--- CS
  Apolipoprotein 141 laphaeeve 149
                     +++ +++++
      EHU00017.1 325 VDAILDKYR 333
                     666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2459.17
//
Query:       EHU00018.1  [L=428]
Description: redox component of a tripartite ferrous iron transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.2e-113  377.6   0.0   4.9e-113  377.4   0.0    1.0  1  Dyp_perox   Dyp-type peroxidase family
     0.0043   16.8   5.1      0.012   15.4   5.1    1.7  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> Dyp_perox  Dyp-type peroxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.4   0.0  5.5e-117  4.9e-113       1     325 [.      66     414 ..      66     416 .. 0.98

  Alignments for each domain:
  == domain 1  score: 377.4 bits;  conditional E-value: 5.5e-117
                 BSSSSS-C-SEEEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHCCCC........SCSSHCTCCCTHSTTTT-EEEEEEEHHHHH.HTTSCGGS-TTCS CS
   Dyp_perox   1 qagiltplqaaaifvaldvkakdkakleallrkltarverLtageka........ppadtgealkarkpdsrLtvtvgiGsslfd.rlglkekrpkeLk 90 
                 qagi+tp+qaa+++va+dv ++d+++l++l++ lt+r+++Ltag+ka        pp+d+g+++ + + +++Lt+tv++G+ lfd r+gl++ +p++L+
  EHU00018.1  66 QAGIITPQQAAMMLVAFDVLTSDRRELQRLFQLLTQRIAFLTAGGKApavvnpqlPPMDSGILGAEIA-PDNLTITVSVGNALFDgRFGLAALKPAKLQ 163
                 89*************************************************************99988.5***************************** PP

                 ----ETTTTEEGGGS--SEEEEEEESSHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEHC.....TSTTCB-TTSSBSSTTS--TCHHHHHH..HS-... CS
   Dyp_perox  91 plpelkndkldapstdgDlliqiraeredvafealrailkafgdavevrdevkGFrsss.....gkvtarnLlGFvDGTeNpkgeeakeav..vli... 179
                 p+++++nd+lda++++gDll+qi+a+++d++++alr+i+k++ d + vr+ ++GF+s++     gk+t++nLlGF+DGT+Np++++++ ++  +++   
  EHU00018.1 164 PMTRFPNDSLDASQCHGDLLLQICANTQDTVIHALRDIIKHTPDLLGVRWRREGFISDHaarsaGKETPINLLGFKDGTANPDTHNHALMDklLWVted 262
                 *********************************************************999*****************************9998888999 PP

                 CSSSGGGTT-EEEEEEEEEE-HHHHTTS-HHHHHHHHTB-TTT--BTTTTSTTS......TTTGSSS-TTSHHHHHSGE.STTTEC--EE--EEEEEEE CS
   Dyp_perox 180 kdedewaagGsYvvvrkirhdleaWdrlslkeQedviGRrKedgaeldddkead......dseekvipkdsHvrlaklk.edgkglkilRralsygeGl 271
                 + e++wa +GsY++vr ir+++e Wdr++l eQ++++GR+K +ga+l++++e+d      d+++++i+ d+H+rla+++ +  +++ +lRr++sy++G+
  EHU00018.1 263 QHEPAWARNGSYQAVRLIRFHVEMWDRTTLGEQQTIFGREKLSGAPLGMKNEHDvpdyrnDPDGQIIALDAHIRLANPRtPATESSLMLRRGYSYSSGV 361
                 99*****************************************************************************8888999************* PP

                 -TTSSCEEEEEEEEEESSCHHCHHHHHHHHSCB-GGGGCEEEEEEEEEEE-BHH CS
   Dyp_perox 272 dkvgkldaGllFiaYqrtlenteqmlqrmlgktdaLlefikavtgglFfapsgv 325
                 +++g+l++GllF++Yq++le ++ ++q++l +++aL+e+i++++gg+Ff+++gv
  EHU00018.1 362 SASGQLEMGLLFVCYQHDLELGFLTVQNRL-NGEALEEYIRPFGGGYFFVLPGV 414
                 ******************************.********************997 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   5.1   1.3e-06     0.012       4      23 ..      12      32 ..      10      34 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-06
  TAT_signal  4 RRdFLKgsAAaaAAaalg.gc 23
                RR +LKg ++++ Aaa+g gc
  EHU00018.1 12 RRRLLKGLGMLGGAAAVGaGC 32
                9***************99455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3244.20
//
Query:       EHU00019.1  [L=262]
Description: putative ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-77  257.5   0.0    8.7e-77  257.2   0.0    1.1  1  PhoH             PhoH-like protein
    4.6e-09   36.3   0.0    9.7e-09   35.2   0.0    1.5  1  AAA_30           AAA domain
    1.1e-05   25.8   0.1    9.9e-05   22.6   0.1    2.1  1  AAA_22           AAA domain
    6.4e-05   23.3   0.0      0.022   15.1   0.0    2.1  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.024   14.3   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.035   13.9   0.1        1.3    8.8   0.0    2.1  2  DEAD             DEAD/DEAH box helicase
      0.036   13.6   0.3        4.8    6.6   0.1    2.1  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
      0.051   13.6   0.0       0.18   11.8   0.0    1.8  2  ResIII           Type III restriction enzyme, res subunit
      0.094   12.3   0.0       0.18   11.4   0.0    1.4  1  DEAD_2           DEAD_2
      0.094   12.7   0.0        5.8    7.0   0.0    2.2  2  AAA_14           AAA domain
       0.11   12.3   0.0          2    8.1   0.0    2.1  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.12   11.6   0.2       0.87    8.8   0.2    2.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2   0.0   5.8e-80   8.7e-77       2     204 ..      57     261 ..      56     262 .] 0.98

  Alignments for each domain:
  == domain 1  score: 257.2 bits;  conditional E-value: 5.8e-80
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 i++++++Q++yl+a+++++++fa+G+aG+GKt+++ a a+eal +k+++rii+trp+++a+e+lGflpgd++ek++py+rp+yd L + lga+ ++++l
  EHU00019.1  57 IEARNEAQAHYLNAIETKQLIFATGEAGCGKTWISAAKAAEALIHKDIDRIIVTRPVLQADEDLGFLPGDISEKFAPYFRPVYDILVKRLGASFMQYCL 155
                 899**********************************************************************************************99 PP

                 ..HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHH CS
        PhoH 101 ..ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplv 197
                   e gk+e+ap+aymRGrT+++a+vilDEAQn+t +qmkmfltRlGen +v+v+Gd+tq+dlp g  sGla+al +++++e ++iv++ k+d+vR+ l+
  EHU00019.1 156 rpEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPAGVPSGLADALARFEEDEMVGIVRFGKEDCVRSALC 254
                 66789********************************************************************************************** PP

                 HHHHHHH CS
        PhoH 198 kkivkay 204
                 +++++ay
  EHU00019.1 255 QRTLHAY 261
                 ****998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.5e-12   9.7e-09       3     161 ..      61     248 ..      59     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 6.5e-12
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkal..reaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.................. 81 
                 n+ Qa+ ++a+ t++  + ++tG AG GKt + +a   +++++++  r+i+  p  +a ++L+   g  ++  a + +                     
  EHU00019.1  61 NEAQAHYLNAIETKQ--LIFATGEAGCGKTWISAAKaaEALIHKDIDRIIVTRPVLQADEDLGFLPGDISEKFAPYFRPVYdilvkrlgasfmqyclrp 157
                 788999998887666..9************86544321555555579****************766655555555554444666667777788888888 PP

      AAA_30  82 ............grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQ..lasVeaGgvlrdlveaagigtaeLtevvRqke.se 161
                              r r  ++ ++i DEa  v ++q++ +l+++ + +++vi+ GD  Q  l++  + g+ + l   a+++  e+  +vR+ + + 
  EHU00019.1 158 eigkveiapfayMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGE-NVTVIVNGDITQcdLPAGVPSGLADAL---ARFEEDEMVGIVRFGKeDC 248
                 899999**999844466777***********************99.************444454455555555...5788889999999855244 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   6.6e-08   9.9e-05       4     114 ..      73     198 ..      69     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.6e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsstsskdllrellralglelka....erlsseellealeqalr 87 
                 t+++++ tGe+G+GKT+  +  + ++ +++++++           e+ +  f     s++ +  +r +  +l  +l a    + l+ e     ++  + 
  EHU00019.1  73 TKQLIFATGEAGCGKTWISAAKAAEALIHKDIDRiivtrpvlqadEDLG--FLPGDISEKFAPYFRPVYDILVKRLGAsfmqYCLRPEIGKVEIAPFAY 169
                 899***********************99999988997777765333333..333333335555666666666655555677777778888888888888 PP

      AAA_22  88 arav...ielliiDEaqhlrseealeeLrs 114
                  r++    +++i+DEaq++ ++++++ + +
  EHU00019.1 170 MRGRtfeNAVVILDEAQNV-TAAQMKMFLT 198
                 88889999***********.7555555433 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0082        12       9      47 ..      73     109 ..      64     121 .. 0.74
   2 !   15.1   0.0   1.5e-05     0.022      99     140 ..     174     214 ..     143     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0082
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeill 47 
                 ++++++ t+ +G+GKT +  ++ a+++  +++  ++i++
  EHU00019.1  73 TKQLIFATGEAGCGKTWISAAKAAEALIHKDI--DRIIV 109
                 56788899********9998888877766654..56655 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.5e-05
      AAA_19  99 klqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQ 140
                 ++ e++++i DE+q+v+  q++++ + lge+ ++++ GD+ Q
  EHU00019.1 174 TF-ENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQ 214
                 44.6679**********6666665555558866*******99 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.024      37      72 ..      64      99 ..      35     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
   IstB_IS21 37 eLatlsfiekkenivllGpsGvGKshlaialgveav 72
                +   l+ ie+k+ i  +G +G GK+++++a + ea 
  EHU00019.1 64 QAHYLNAIETKQLIFATGEAGCGKTWISAAKAAEAL 99
                4556777999*******************9988875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00087       1.3       2      52 ..      62     109 ..      61     117 .. 0.83
   2 ?    3.0   0.0     0.051        77     124     149 ..     179     204 ..     170     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00087
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkali 52 
                 + Qa+ +++i +++ +++ +e G GKT + +  + +++++   k+  ++++
  EHU00019.1  62 EAQAHYLNAIETKQLIFATGEAGCGKTWISAAKAAEALIH---KDIDRIIV 109
                 6799*************************99999999986...33335555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.051
                 EEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 124 flVlDEadrlldqgfsdfinrilnql 149
                 +++lDEa+++   +++ f+ r+ +++
  EHU00019.1 179 VVILDEAQNVTAAQMKMFLTRLGENV 204
                 79**********99999999987766 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0032       4.8       3      50 ..      62     109 ..      60     110 .. 0.78
   2 ?    5.1   0.0    0.0095        14     259     294 ..     179     214 ..     170     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
                    HHHHHHHHS-SSEEEEEE-..TTSSHHHHHHHHHHHHHHTSSSTGGGEEE CS
  UvrD-helicase   3 peqreaiaslggpilveAs..AGsGKTfvlaerilrlikeeeiepdrilv 50 
                    + q   ++  +++ l+ A   AG GKT + a++ ++ + ++  ++dri+v
     EHU00019.1  62 EAQAHYLNAIETKQLIFATgeAGCGKTWISAAKAAEALIHK--DIDRIIV 109
                    556666667677777777555*****************999..8888876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0095
                    EEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 259 eiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    ++  DE+Q    +Q++++ +   ++  +++ GD+ Q
     EHU00019.1 179 VVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQ 214
                    7889*************9887777777999999999 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.18      17      59 ..      69     109 ..      49     136 .. 0.76
   2 ?   -1.3   0.0       1.3   1.9e+03     133     148 ..     177     191 ..     168     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                 ......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEE CS
      ResIII  17 eklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflf 59 
                 +++  + ++ ++   + G+GKT+++ ak++e+l +k +++++++
  EHU00019.1  69 NAI--ETKQLIFATGEAGCGKTWISaAKAAEALIHK-DIDRIIV 109
                 444..355556677899********77888888776.5456555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
                 -SEEEEETGGGTTS.T CS
      ResIII 133 fdviiiDEaHrlgakk 148
                 + v+i DEa +++a +
  EHU00019.1 177 NAVVILDEAQNVTA-A 191
                 34999999977777.4 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.18     145     165 ..     174     194 ..     162     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 .GCGCEEEECTCCCHHHHHHH CS
      DEAD_2 145 slknsivilDEAhNiedvcee 165
                 + +n +vilDEA+N+     +
  EHU00019.1 174 TFENAVVILDEAQNVTAAQMK 194
                 579***********9876655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.04        59       4      28 ..      76     102 ..      73     133 .. 0.77
   2 ?    7.0   0.0    0.0039       5.8      64      97 ..     176     208 ..     150     213 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.04
      AAA_14   4 ilvitGaRrvGKTtllkqlikell..v 28 
                 +++ tG   +GKT++    + e l   
  EHU00019.1  76 LIFATGEAGCGKTWISAAKAAEALihK 102
                 667788899******988877777332 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0039
      AAA_14  64 kktylflDEiqevpewekalkslvdegknldviv 97 
                 ++ +++lDE+q+v+ ++  +  l + g+n+ viv
  EHU00019.1 176 ENAVVILDEAQNVTAAQMKM-FLTRLGENVTVIV 208
                 6789*********8765432.2222234556666 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.099   1.5e+02       4      12 ..      80      88 ..      77     109 .. 0.84
   2 ?    8.1   0.0    0.0014         2      62     103 ..     176     218 ..     166     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.099
  Viral_helicase1  4 hGvpGcGKS 12
                      G +GcGK+
       EHU00019.1 80 TGEAGCGKT 88
                     688*****9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
  Viral_helicase1  62 kgkililDEylllhaGyill.laalskaklvilfGDplQipfh 103
                      ++ ++ilDE++ ++a+++++ l +l +  +vi+ GD  Q+   
       EHU00019.1 176 ENAVVILDEAQNVTAAQMKMfLTRLGENVTVIVNGDITQCDLP 218
                      4789****************9999999999******9998765 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   0.00058      0.87       1      26 [.      74     102 ..      74     210 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00058
     DUF2075   1 kavvlVtGvaGtGKtvvllnllael...e 26 
                 k++++ tG+aG GKt +  + +ae+   +
  EHU00019.1  74 KQLIFATGEAGCGKTWISAAKAAEAlihK 102
                 6899***********99888777775542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1941.12
//
Query:       EHU00020.1  [L=400]
Description: acyl-CoA dehydrogenase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-08   32.9  10.6    6.9e-08   32.9  10.6    2.3  3  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    3.4e-06   27.2   0.1    6.7e-06   26.2   0.1    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    4.9e-05   24.0   0.0    0.00024   21.7   0.0    2.1  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
  ------ inclusion threshold ------
      0.032   13.3   0.8      0.046   12.8   0.8    1.1  1  FA_synthesis   Fatty acid synthesis protein


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   5.6e+03      44      72 ..      72      93 ..      66     107 .. 0.45
   2 ?   -2.3   0.0       1.1   4.8e+03      80      99 ..     165     184 ..     155     215 .. 0.55
   3 !   32.9  10.6   1.5e-11   6.9e-08       7     130 ..     236     371 ..     231     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
  Acyl-CoA_dh_2 44 laeaaarldAAralleraaaraealaaag 72
                   laea ++l +A        ++++a ++++
     EHU00020.1 72 LAEADSNLPQAL-------RAHMAFVEDR 93
                   444444444443.......3333333333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
                    HHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2  80 raearraaalavelaiaavd 99 
                    r++++r+ +++v++ ++ v+
     EHU00020.1 165 RTDNQRDVIAVVSTHQDSVE 184
                    45555555555555444444 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 1.5e-11
                    HHHHHHHHHHHHHHHHHHHHC...TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHTT---.-HHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2   7 alGaAraalaefvelarervr...assgekladdpatqlalaeaaarldAAralleraaaraeal........aaagkev.tvedraearraaala 90 
                      G+ ra + ++   +++r+r    ++++++++d  + + ++++++ + A  a +++a+ + + +        a+  ++  +v+   ea+ a+++a
     EHU00020.1 236 LAGIGRAIVRDVSRSVAQRKRiysHGNARQVKQDVQVLQVVGQISSWVWATDAAVQQATPSLQLAfdahqqgqAESLIHAaNVQAEVEAAKAQVVA 331
                    56999****************98888889999999999*****9987777777777776665554222222222222222345555666666**** PP

                    HHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSG CS
  Acyl-CoA_dh_2  91 velaiaavdalfeaaGgsalrkesplqRlwRDahaaaaHa 130
                    ve  ++a+++lf+a G+s +r  + l+R+wR+a+++a+H 
     EHU00020.1 332 VEWITRAASELFNALGASDTRVINALDRHWRNARTIASHN 371
                    ***************************************5 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   1.5e-09   6.7e-06      13      95 ..     127     205 ..     118     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.5e-09
                    GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M  13 vasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                    + +v+t +++  g ++ l+GeK ++t+  +a+++ v+a+  ++d++r++ +++v +++  v+  + ++  G+r + +g  +f 
     EHU00020.1 127 LGDVNT-TVSPTGHGWQLTGEKFYSTGTLYADWIDVYAK--RTDNQRDV-IAVVSTHQDSVERDDDWDGFGQRLTGSGTTRFR 205
                    677888.78888888************************..55525666.9999999******9999******9999999986 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.3e-08   0.00024      11     113 .]      13     113 ..       4     113 .. 0.84
   2 ?   -1.9   0.0       1.2   5.3e+03      62      79 ..     313     330 ..     296     357 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.3e-08
                    HHHHHHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHHHHHHH CS
  Acyl-CoA_dh_N  11 vrefaeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfGteeqkrryL 106
                    +r ++++ +a+ aa  +++++  +e ++ l+++G+  + +p++ gG+g++  +   ++ ela ad+ l  +l +h++ v    l+    e ++r+ 
     EHU00020.1  13 FRPVFAR-IADGAAARERDRTLLHEPINWLKAAGFGTLRIPTANGGLGASLPQLFRLLTELAEADSNLPQALRAHMAFVED-RLNQPDSEDRQRWF 106
                    5555544.6677777777777788999999999**********************************999*****999974.6888999999***9 PP

                    HHHHTTS CS
  Acyl-CoA_dh_N 107 pklasge 113
                    +++++g+
     EHU00020.1 107 RRFVDGD 113
                    9999985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                    HHHHHHHHHHHHH-HHHH CS
  Acyl-CoA_dh_N  62 leaaivaeelaradagla 79 
                    ++aa v  e+++a a + 
     EHU00020.1 313 IHAANVQAEVEAAKAQVV 330
                    444444444444444322 PP

>> FA_synthesis  Fatty acid synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8     1e-05     0.046      47     125 ..     262     339 ..     237     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
                   -S..--TT.EEEEE--B---TTS-HHHHHHH-TTBHHHHHHHHHHTTS-SEEEE-S-HHHHHHHHHHCT-B-TT-SS-E CS
  FA_synthesis  47 kkeeeakskleivhaedviemeekpvaavrkkkdssmavalelvkegeadalvsaGntgAlmalallrlgrikgierpa 125
                   ++  + k+ +++++  + i++ + ++ a  ++   s+++a ++ ++g+a+ l+ a n  A + +a+ ++ +++ i+r a
    EHU00020.1 262 NA-RQVKQDVQVLQVVGQISSWVWATDAAVQQATPSLQLAFDAHQQGQAESLIHAANVQAEVEAAKAQVVAVEWITRAA 339
                   44.3567789999999*****9999887777777******************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2944.95
//
Query:       EHU00021.1  [L=484]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-33  114.6  24.7      7e-33  114.2  24.7    1.1  1  Sugar_tr  Sugar (and other) transporter
    1.3e-25   90.1  51.0      1e-24   87.1  39.2    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.1    7.5   6.6        2.5    6.3   0.5    2.4  3  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2  24.7   1.2e-36     7e-33      44     436 ..      75     464 ..      21     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 1.2e-36
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS....-SCCHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA....pkklRga 138
                 + +l+gl++s+ ++G i+G l +g+l+d++GR +++++  ++fv++a+  ++a+   +v+v+i +R+l+GigvG+   ++  y++E++    + +++ +
  EHU00021.1  75 TPTLTGLVTSSIMIGTIVGNLAGGWLTDKYGRYSVFMADMLFFVVSALAAGLAP---NVWVMIGARFLMGIGVGMDLPVAMAYLAEFSkfsgKGNKAAR 170
                 55789*************************************************...*******************************88886777777 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HHHHHHHHHHHHHC...HHHHHHHHHHHHH CS
    Sugar_tr 139 lvslyqlaitfGilvaaifglglnktsn...adgwrillglqlvpallllill.lflPESPrylvekgkeeeakevlaklrge...edadrelaeekds 230
                 l  +  +++++  +  +i+ + +    +   ++ wr  l + +vpall+++++  f+ ESP +   +g+   a ++l+++ g    ed++ +++  + +
  EHU00021.1 171 LAAWCPMWYAASSVCFFIIFALYFLLPAqhiDWLWRASLLFGAVPALLIIAVRsKFMNESPLWAANQGDLRGAVRILRESYGIqahEDKSSAIEPVAPA 269
                 777777777766554444443332222235789*************999999878************************44431112222222222222 PP

                 HHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHH.H...HHHHHS-SHHHHHHHHH CS
    Sugar_tr 231 leaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfva.i...flvdrfGRRtllllGaa 325
                          +s + l+++  +r r+++++v++++  + +  ai ++ p+i+ +      +++ +    +n+++ f + +    l  +f  R + + G+a
  EHU00021.1 270 ---------VSFRVLFQK-PYRERTIVAAVMNACIAFEY-TAIAFFLPSILAQFLGAGVFETIAASLGLNALFAFTGgLlgmRLAWKFPSRHVAIAGFA 357
                 .........355566666.89*****************9.55666666666665555666777777777777777664333388899************ PP

                 HHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHH CS
    Sugar_tr 326 gmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfag 424
                  ++i+++ l+   l++  + +   + ai ++ +++++ ++g+g  + ++ +  +p+s+R+++  ++  ++   + l  ++ pi++ a+g +  f++   
  EHU00021.1 358 LQFIALISLA---LIGHPEATYGVVFAILLLGVWLFAEGFGPGAQLMIYPALAYPTSIRATGVGFSRLISGAGSALALFILPILQAAYG-TNLFWIVSL 452
                 *********7...555555445566666677777777778888889999999*************************************.888888888 PP

                 HHHHHHHHHHHH CS
    Sugar_tr 425 lavlfiifvfff 436
                  a++ iif ++ 
  EHU00021.1 453 AALIPIIFLLVV 464
                 888888887664 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1  39.2   1.7e-28     1e-24       4     315 ..      50     391 ..      47     402 .. 0.81
   2 !    7.3   5.9   0.00033         2     108     184 ..     402     476 ..     389     483 .. 0.78

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.7e-28
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagal 102
                 ++fl a++ ++l+  +   + +++ ++p+  gl+++  ++g++v++l +G+l+d++Gr +v+++ +l+f++++l++ +a+++w+++ +r+l+G+g g+ 
  EHU00021.1  50 GVFLDAYDLTTLSYGID-DVVKTFSLTPTLTGLVTSSIMIGTIVGNLAGGWLTDKYGRYSVFMADMLFFVVSALAAGLAPNVWVMIGARFLMGIGVGMD 147
                 67888889999888888.9*****************************************************6666688******************** PP

       MFS_1 103 fpagaaliadwfpke....ergraigllsagfslGailg.pllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 +p+++a++a+ ++ +    + +r  ++  + +++++++   +++ +++  l        Wra+ ++ a+ +ll + +     + ++++ +  ++ +++ 
  EHU00021.1 148 LPVAMAYLAEFSKFSgkgnKAARLAAWCPMWYAASSVCFfIIFALYFL--LPaqhidwlWRASLLFGAVPALLIIAV--RSKFMNESPLWAANQGDLRg 242
                 **********99877445333333344444444444444344454444..334578999**************9665..88888889999998888889 PP

       MFS_1 189 ...................kgtgpaplvpawkallkdpvlwillialllf...ffgfsglltllplylqevlglsglllaglllallalvgailallag 265
                                    +    ap+v+ ++ l+ +p+    ++a++++   +f ++++ ++lp++l + lg + + ++++ l+l al+++ ++ll+ 
  EHU00021.1 243 avrilresygiqahedkssAIEPVAPAVS-FRVLFQKPYRERTIVAAVMNaciAFEYTAIAFFLPSILAQFLGAGVFETIAASLGLNALFAFTGGLLGM 340
                 9***********98888887888888888.99999999552344444444111335555****************6666777799999999999***** PP

       MFS_1 266 rlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glg 315
                 rl+ ++++r   + +++l ++a+++lal+++++ +  ++++++l+G+  ++
  EHU00021.1 341 RLAWKFPSRHVAIAGFALQFIALISLALIGHPEATYGVVFAILLLGVwLFA 391
                 ********************************8888888899999985555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00033
       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrksp 184
                 ++ a  +p + r+ ++g+  + +++G++l+  + ++l +++g   +f+i+ +++l+ ++ fll+++ ep+++  + p
  EHU00021.1 402 IYPALAYPTSIRATGVGFSRLISGAGSALALFILPILQAAYGT-NLFWIVSLAALIPII-FLLVVRFEPTRHDIDDP 476
                 45577899999**************************999985.689999999999877.45666666666555544 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5   0.00045       2.7     154     195 ..      61     104 ..      18     114 .. 0.69
   2 ?    6.3   0.5   0.00042       2.5     324     381 ..      71     127 ..      68     132 .. 0.77
   3 ?    3.4   0.5     0.003        18     132     180 ..     130     181 ..     120     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00045
                 xxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 154 isY.idDnvkk.knsplylgilyalrilGpalGfllGslllkly 195
                 +sY idD vk+ + +p++ g++++  ++G ++G l G+ l+  y
  EHU00021.1  61 LSYgIDDVVKTfSLTPTLTGLVTSSIMIGTIVGNLAGGWLTDKY 104
                 34448999988345889999999999999999999999888776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00042
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 324 qFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllslllll 381
                  Fsl+++   l+t +++i g ++G l+gG+l+ k+      +a + ++v    +++l+
  EHU00021.1  71 TFSLTPTLTGLVTSSIMI-GTIVGNLAGGWLTDKYGRYSVFMADMLFFVVSALAAGLA 127
                 577777777777766655.8899***********999999999988888777766665 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.003
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvk...kknsplylgilyalrilG 180
                 v +++ a +l+GiG  +  +++++Y+ +++k   k n +  l++++ ++   
  EHU00021.1 130 VWVMIGARFLMGIGVGMDLPVAMAYLAEFSKfsgKGNKAARLAAWCPMWYAA 181
                 45899**********************9987333556666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3133.07
//
Query:       EHU00022.1  [L=469]
Description: hypothetical protein CKS_1871 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-49  168.5   0.2      3e-49  168.1   0.2    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.2   1.7e-53     3e-49      18     310 ..      35     391 ..      21     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 1.7e-53
  Bac_luciferase  18 asaslrylvelaraaEelGfdavwvaehhggpgga................ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhl 96 
                     +  +l+y  +la+++E+ +fd++++a+ +g+ +                   d+++l+  +a++T+++++g + +  +  hP+  A+   tLdhl
      EHU00022.1  35 Y-KDLEYWTDLAVLLERGKFDGLFIADVLGIYDVFngnndaalrsasqvpvNDPLALIIPMAMVTQHLGFGLTSSLSF-EHPYPFARRMSTLDHL 127
                     3.4899************************96655999****************************************.**************** PP

  Bac_luciferase  97 sgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg......................eevdfeGeffsvkgalllprpgqg 165
                     ++GR+g++++t+  ++ +r+ G+    +hd+ry++++E+++v+ +l++g                      ++++++G ff+v g++l  +++q+
      EHU00022.1 128 TKGRIGWNIVTSYLESGARNLGQatqtRHDARYDYADEYLQVVYKLLEGsweddavirdrerhifsdpnkvHPINHQGTFFQVPGIHLCEPSPQR 222
                     ***********************************************88999******************7777***********9999999888 PP

  Bac_luciferase 166 piP.vyvaaaspaglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld.......... 249
                       P +y a+as +g ++aa+ha+ +++a  +   ++++++++r +a+eagrdp +i +  + tviv++t++ A+a+++++ + +           
      EHU00022.1 223 -TPvLYQAGASSRGKAFAAQHAECVFVAAPSKVLLRKTVADIRRRAEEAGRDPRSILIFNMQTVIVGETDKLAQAKWQDYKRYVShegalalisg 316
                     .9999************************************************************************666655556788999999 PP

  Bac_luciferase 250 .......fyaldsegagreaeaa....eiqeeedanlwagaadavpdelvaatal..vGtpeqvaerlaa.yaea 310
                            +y+ d+++ + +++a     e++ + d++++ ++++  +  ++ +++   vG+ e+va++l+  ++e+
      EHU00022.1 317 wtgidfsQYQPDQVFKHLHTDAIqsvvESFSTADPQREWTVQNMADWVGIGGFGPllVGSTETVADELQSwVEET 391
                     99*****99999999999999996666445555555554444444333333333366************955555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3587.04
//
Query:       EHU00023.1  [L=470]
Description: hydroxyacylglutathione hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-30  106.8   7.8    5.1e-29  101.3   0.9    2.8  3  NAD_binding_9   FAD-NAD(P)-binding
    2.8e-10   39.9   2.3    1.3e-06   27.8   0.0    3.1  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    4.5e-10   39.2   0.0    6.3e-09   35.5   0.0    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.8e-08   34.5   0.3    1.8e-06   28.1   0.2    2.8  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.3e-07   32.0   0.5    0.00039   20.9   0.2    3.1  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.3e-05   24.2  13.7    0.00037   20.2  13.7    2.8  1  DAO             FAD dependent oxidoreductase
     0.0018   17.2   0.1     0.0029   16.5   0.1    1.3  1  Trp_halogenase  Tryptophan halogenase
     0.0066   15.7   0.0       0.72    9.0   0.0    2.5  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0076   15.3   0.5      0.019   14.0   0.5    1.9  1  Lycopene_cycl   Lycopene cyclase protein
  ------ inclusion threshold ------
      0.023   13.8   0.2        2.1    7.4   0.2    2.3  2  GIDA            Glucose inhibited division protein A
       0.14   10.8   0.1       0.33    9.6   0.1    1.6  1  HI0933_like     HI0933-like protein
       0.19   10.9   0.1       0.38   10.0   0.1    1.5  1  Thi4            Thi4 family
        2.5    7.1  12.5        6.4    5.7  10.4    2.6  2  FAD_binding_2   FAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.9   3.7e-32   5.1e-29       1     155 [.       7     156 ..       7     157 .. 0.93
   2 ?   -1.6   0.0       1.7   2.3e+03       1      34 [.     194     224 ..     194     234 .. 0.73
   3 !    8.7   0.4    0.0012       1.6     106     154 ..     319     371 ..     312     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 3.7e-32
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddpptfaeWlrerga..lee.aeeldpddfvpR 93 
                    +ivG+G++G+a++ +L +    ++ l++tl++p++  a++v++++ +++++lNvpas+m+l  d++ +f++W+r+ +a   +  a+  d++ +++R
     EHU00023.1   7 VIVGGGFSGTALAVHLGRLG--QAGLRVTLIEPRSQLAQGVAYSTADPAHRLNVPASRMQLAGDEEGSFDRWYRASDAyvSDPaARWHDGHVYPQR 100
                    7******************7..***********88877999999999******************************9863336889999****** PP

  NAD_binding_9  94 alyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    + + r+++++fe+++++ p  v + ++++++v+ ++     +v +a g++laad VvLA+ h
     EHU00023.1 101 RQFARWVNAQFEAAQRESP--VVLAHLQDRAVAFRDG----TVSTAAGTHLAADIVVLAVSH 156
                    ***************9997..78**********9965....6889***************99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdps 34 
                    aivG G + + +++ L ++   +++  +t+f ++
     EHU00023.1 194 AIVGSGLTMADMVATLDRQ---GHRGPVTVFSRR 224
                    7899888777777766666...688888888665 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0012
  NAD_binding_9 106 ellarlpegvtvevhraevvdleeradgqavll..adgasl..aadaVvLAlG 154
                    ++l++ +e+ +++v+ a+ ++ e +++ ++++l  ++g+ +  ++d+V++++G
     EHU00023.1 319 QVLNARQENGSLQVMAARLTAAESSHSAVRLHLqtRSGEVVtrEVDKVIVTTG 371
                    6788889999****************998777643677654459********9 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0027       3.7     191     228 ..       3      41 ..       1      49 [. 0.83
   2 !   27.8   0.0   9.7e-10   1.3e-06     100     228 ..     102     227 ..      93     252 .. 0.82
   3 ?    3.9   0.1     0.017        24     301     339 ..     335     371 ..     319     374 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0027
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrr.qkkvelklvtrseal 228
                  +++i++vG+G S+  ++ +l r  q+   ++l+  +++l
   EHU00023.1   3 EQHIVIVGGGFSGTALAVHLGRLgQAGLRVTLIEPRSQL 41 
                  789****************99985556889888777665 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 9.7e-10
  K_oxygenase 100 dYlrWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG.tepkiPevleklegkervvHsseylerkeellakkriaV 196
                  ++ rWv +q+e   + ++ v   + ++++   +++  +  ++   ++l a  +vl+v    p++P +l++l +++ ++      +  ++   ++ria+
   EHU00023.1 102 QFARWVNAQFEA-AQRESPVVLAHLQDRA--VAFRDGT-VSTAAGTHLAADIVVLAVShPAPSLPGALTALADHPAIIADPWQEKALASVGPEERIAI 195
                  5679*******9.7777777666666654..3444333.245667899999999***9789***********87777777777777778999****** PP

  K_oxygenase 197 vGsGqSaaeifedllrrqkkvelklvtrseal 228
                  vGsG + a+++  l r+ ++  +++++r+ +l
   EHU00023.1 196 VGSGLTMADMVATLDRQGHRGPVTVFSRRGQL 227
                  ****************************9876 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.017
  K_oxygenase 301 revesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                   ++++ae++++ +v+l+l+   sge  t evd v++ TG
   EHU00023.1 335 ARLTAAESSHS-AVRLHLQT-RSGEVVTREVDKVIVTTG 371
                  56788888875.99999988.88999999*******999 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.6e-12   6.3e-09       2     178 ..       5     228 ..       4     257 .. 0.71
   2 ?    0.8   0.0      0.17   2.3e+02      69     237 ..     332     372 ..     300     436 .. 0.61

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.6e-12
                  SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...............................HHHHCHHH CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias...............................evvkklnq 65 
                  ++v++GgG+ G+a+a +l++   ag++vtl+e  +  l +g+ +s+a  + + +    +                                +v  ++ 
   EHU00023.1   5 HIVIVGGGFSGTALAVHLGRlgqAGLRVTLIE-PRSQLAQGVAYSTADPAHRLNVPASRmqlagdeegsfdrwyrasdayvsdpaarwhdGHVYPQRR 101
                  79******************9989*******5.444555555554433333333322225556777888889******************55555555 PP

                  H.CCCCHCCTCEEEEESCEEEEETEEEC............TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.....SEE CS
                  x.xxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx RF
  Pyr_redox_2  66 g.ielllgeevvkidpgkkkvklekkke............gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.....kri 145
                  +  +++++   ++  + +  v+l ++++              ++++a+d +vlA       + +pG+ +   ++  +   a+++++k l      +ri
   EHU00023.1 102 QfARWVNA--QFEAAQRESPVVLAHLQDravafrdgtvstAAGTHLAADIVVLAVS--HPAPSLPGALTALADH--PAIIADPWQEKALAsvgpeERI 193
                  52444444..5555555557777777767777777777888899**********95..4467789993333333..44445555555555666669** PP

                  EEES-SHHHHHHHHHHHHHT-E..EEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  Pyr_redox_2 146 vvvGgGyiGvElAaalaklgke..vtlveardrll 178
                  ++vG+G++  ++ a+l + g++  vt+  +r +l 
   EHU00023.1 194 AIVGSGLTMADMVATLDRQGHRgpVTVFSRRGQLP 228
                  ******************99977899999988776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
                  CCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  69 lllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgk 166
                  ++                                                                                                
   EHU00023.1 332 VM------------------------------------------------------------------------------------------------ 333
                  33................................................................................................ PP

                  EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEEEEETTSCE..EEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx..xxxxxxxxxxxx RF
  Pyr_redox_2 167 evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge..klevvledgee..idadlvvvavGv 237
                                                       ++ +++++ ++  +l++++ +ge+   ++d v+v +G 
   EHU00023.1 334 ------------------------------------AARLTAAESSHSavRLHLQTRSGEVvtREVDKVIVTTGP 372
                  ....................................444444444444332223333333333455555555543 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.2   1.3e-09   1.8e-06       1      54 [.       8      65 ..       8      80 .. 0.86
   2 ?    3.5   0.0     0.062        85       1      29 [.     195     225 ..     195     228 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.3e-09
                   EE--SHHHHHHHHHHHC...CTEEEEEE-SSSSSS.GGG-EECETTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak...agfdvlllekrdrlG.Graasyevpgvrvdygahifhg 54
                   IvG+G+sG ++A +L +   ag++v+l+e r++l  G a+s  +p +r++++a+ +  
     EHU00023.1  8 IVGGGFSGTALAVHLGRlgqAGLRVTLIEPRSQLAqGVAYSTADPAHRLNVPASRMQL 65
                   9*************998443599***********99****************998854 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.062
                    EE--SHHHHHHHHHHHCCTEE..EEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfd..vlllekrd 29 
                    IvG+Gl+ + + ++L ++g++  v+++ +r 
     EHU00023.1 195 IVGSGLTMADMVATLDRQGHRgpVTVFSRRG 225
                    89****999999******99777***98886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   2.8e-07   0.00039       1      35 [.       5      42 ..       5      51 .. 0.89
   2 !    7.3   0.0     0.005       6.9       1      35 [.     192     228 ..     192     263 .. 0.80
   3 ?   -0.8   0.1       1.7   2.4e+03      42      77 ..     334     367 ..     327     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.8e-07
                EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg...kkVtvversdkll 35
                ++v+vGgG++g  lA  l +lg    +Vt++e +++l 
  EHU00023.1  5 HIVIVGGGFSGTALAVHLGRLGqagLRVTLIEPRSQLA 42
                79****************99996667********9997 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.005
                 EEEEECSSHHHHHHHHHHHHTT..SEEEEEESSSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg..kkVtvversdkll 35 
                 ++++vG+G++  ++ ++l + g    Vtv+ r+ +l 
  EHU00023.1 192 RIAIVGSGLTMADMVATLDRQGhrGPVTVFSRRGQLP 228
                 799***************77662268*******9986 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgvesvk 77 
                 a+++++ + ++  ++++l+t+  e+++ e    +v 
  EHU00023.1 334 AARLTAAESSHSAVRLHLQTRSGEVVTREVD--KVI 367
                 5555666667778999999999999977754..444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  13.7   2.7e-07   0.00037       1     207 [.       5     378 ..       5     397 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.7e-07
                 EEEEECTSHHHHHHHHHHHHTT.....EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH....................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg.....VtllekgdiagsgaSgrnsgllhsglrylpeas....................................... 55 
                 ++vi+GGG  G + A +L r g     Vtl+e ++++++g    ++   h     ++  s                                       
  EHU00023.1   5 HIVIVGGGFSGTALAVHLGRLGqaglrVTLIEPRSQLAQGVAYSTADPAHRLNV-PA--Srmqlagdeegsfdrwyrasdayvsdpaarwhdghvypqr 100
                 79****************7666666*************9999999999999553.22..2233444555556666666666666666666666666666 PP

                 .........HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS..................................................... CS
         DAO  56 .........elarlslealeelreleeelgididyrrtGllslaad..................................................... 92 
                          ++    +e+   l++l+++        r G++s+aa+                                                     
  EHU00023.1 101 rqfarwvnaQFEAAQRESPVVLAHLQDR----AVAFRDGTVSTAAGthlaadivvlavshpapslpgaltaladhpaiiadpwqekalasvgpeeriai 195
                 6555444433223333333333444444....3344566666665456666666666666666666666666666666666666666666666666666 PP

                 ............................................................HHHHHHHH...........................HHHH CS
         DAO  93 ............................................................eeeleald...........................klla 104
                                                                             +      +                            l++
  EHU00023.1 196 vgsgltmadmvatldrqghrgpvtvfsrrgqlprpnisqhdlswsleghlarpagvrcwlR------RirqdmrqaaarglpwqvvfdevrrqgqTLWQ 288
                 6666666655555555555555555555555555555555555555555555555555551......04444444444444444444333332222222 PP

                 HHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEE.EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GG CS
         DAO 105 llleagldaelldaeevrelepalpgllgalfypdtgqv.dpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGa 202
                 + l+++ + ++l+   +r ++    +++     p++gqv ++++   +l+  a++l +    ++ v+ + ++  + ++v  +t    +++d+v++++G+
  EHU00023.1 289 S-LPLNEQRRFLRH--LRPWW----DVHRYRIAPQAGQVlNARQENGSLQVMAARLTAAESSHSAVRLHLQT--RSGEV--VT----REVDKVIVTTGP 372
                 2.233333345544..66666....34444567888888777777777777777777777777777765222..22333..22....347999999999 PP

                 GHH.HH CS
         DAO 203 wsd.ll 207
                   + l+
  EHU00023.1 373 AHGkLV 378
                 977444 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.1e-06    0.0029       2      43 ..       6      47 ..       5      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.1e-06
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe 43
                    ivivGGG +G   A +l++ ++  l+vtl+e       gv  
      EHU00023.1  6 IVIVGGGFSGTALAVHLGRLGQAGLRVTLIEPRSQLAQGVAY 47
                    9********************999*******87666666655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00052      0.72     163     202 ..       2      44 ..       1      58 [. 0.83
   2 ?    3.8   0.0      0.02        28     207     266 ..     310     371 ..     300     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00052
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrk...gaeVtvvtrgseieke 202
                  ++q++v++Gg+ S+   A++l r    g +Vt++ ++s++ + 
   EHU00023.1   2 SEQHIVIVGGGFSGTALAVHLGRLgqaGLRVTLIEPRSQLAQG 44 
                  6799****************9887444779****999987764 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
  Pyr_redox_3 207 syslkpdienrleelvkeekikvlfn.aevkeikekeeeykvktedgkkvev.kddvvlatG 266
                   y++ p   + l++ +++++++v+    ++ e +++ ++ +++t++g+ v+   d+v++ tG
   EHU00023.1 310 RYRIAPQAGQVLNARQENGSLQVMAArLTAAESSHSAVRLHLQTRSGEVVTReVDKVIVTTG 371
                  6899**********99998888765504556667777888999****999983466666688 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.5   1.4e-05     0.019       2      40 ..       6      45 ..       5     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
  Lycopene_cycl  2 vvviGaGpAglslAarl.teakpglkvvlieaspsllfpn 40
                   +v++G+G  g +lA +l    ++gl+v+lie+  +l  + 
     EHU00023.1  6 IVIVGGGFSGTALAVHLgRLGQAGLRVTLIEPRSQLAQGV 45
                   89**************9444899*********98886555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2    0.0015       2.1       2      31 ..       6      38 ..       5      57 .. 0.75
   2 ?    4.1   0.0     0.014        20     108     155 ..     327     376 ..     288     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
                EEEE-SSHHHHHHHHHHHH...TT--EEEEES- CS
        GIDA  2 viViGgGhAGceAAlaaar...lGakvlLithk 31
                ++++GgG +G++ A+++ r   +G++v+Li ++
  EHU00023.1  6 IVIVGGGFSGTALAVHLGRlgqAGLRVTLIEPR 38
                89*************987611167889998444 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.014
                 STTEEEEES-EEEEEECTTEEEE.EEETTS-EEEEC..EEEE--TT-BT-E CS
        GIDA 108 epnleiieeeveeliveekkvkg.vvtedgetikak..avviatGtflkgk 155
                 +  l+++ ++ +  + +++ v+  + t++ge+++ +  +v+++tG+  +gk
  EHU00023.1 327 NGSLQVMAARLTAAESSHSAVRLhLQTRSGEVVTREvdKVIVTTGP-AHGK 376
                 45677777777777777777766588999999998888********.5554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00024      0.33       2      40 ..       5      46 ..       4      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00024
                 SEEEE--SHHHHHHHHHH...HHTT--EEEE-SSSSS-HHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa...akrgkrVlllekakklgrKil 40
                 +++++GgG +G   A+++   +++g rV+l+e  ++l++ ++
   EHU00023.1  5 HIVIVGGGFSGTALAVHLgrlGQAGLRVTLIEPRSQLAQGVA 46
                 69**************99777899********9999887665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00027      0.38      17      51 ..       3      39 ..       1      48 [. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
                EEEEEEE--SHHHHHHHHHHHHC..TTS-EEEEESSS CS
        Thi4 17 esDvvivGaGssGLtaayylakk..pdlkvailersv 51
                e+ +vivG+G sG + a  l++    +l+v+++e + 
  EHU00023.1  3 EQHIVIVGGGFSGTALAVHLGRLgqAGLRVTLIEPRS 39
                789*****************997668*******9654 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.4    0.0047       6.4       2     115 ..       6     124 ..       5     393 .. 0.85
   2 ?   -0.9   0.0      0.48   6.7e+02     374     406 ..     400     432 ..     397     438 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0047
                    EEEE--SHHHHHHHHHHHH...TTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaae...aGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavd 94 
                    ++++G+G++G a A+ + +   aGl+v+++e  ++     a+s +  +  l+ ++ +++   ++e  +  ++ a+d     p+++    ++   ++
     EHU00023.1   6 IVIVGGGFSGTALAVHLGRlgqAGLRVTLIEPRSQLAQGVAYSTADPAHRLNVPASRMQLAGDEEGSFDRWYRASDAYVSDPAARWHDGHVYPQRR 101
                    89*************8654333999*********999999999987666666666666665669************999********99******* PP

                    HHHHT.T----BCCTS.SB-EEE CS
  FAD_binding_2  95 eLeel.gvpfsrtedg.pvdvre 115
                    +++++  ++f  ++++ pv +++
     EHU00023.1 102 QFARWvNAQFEAAQREsPVVLAH 124
                    *****966666633333333322 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.48
                    -EEEBETTSBESTTEEESSBTEEE-STCEESSS CS
  FAD_binding_2 374 gGvetdengrvldadgqpipGLYAaGevaaggv 406
                     G+ +++ +++  a+g+  + LY +G +a g +
     EHU00023.1 400 LGIDVNALSQTRTAQGHSNSHLYVVGPAARGRF 432
                    69************************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3472.75
//
Query:       EHU00024.1  [L=390]
Description: alkanesulfonate monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-88  294.7   2.6    1.1e-87  294.5   2.6    1.0  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.5   2.6   5.9e-92   1.1e-87       2     313 ..      10     331 ..       9     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 294.5 bits;  conditional E-value: 5.9e-92
  Bac_luciferase   2 efgvflptrqggalgaas.....aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaa 91 
                     ++++flpt+++g++ +++     ++l yl ++a aa++lGf +v+++++ ++    +d++ ++aala+ T+++r ++av+p++   P ++A++aa
      EHU00024.1  10 NLFWFLPTHGDGRYLGTTqggraVDLPYLQQVALAADNLGFYGVLIPTGKSC----EDSWLVAAALAPITKQLRYLVAVRPGL-QPPSLAARMAA 99 
                     689*********9999999*********************************....***************************.*********** PP

  Bac_luciferase  92 tLdhlsgGRfglglgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgp.iPvyvaaaspaglelaa 183
                     tLd+ls+GR+ ++++tgg++ve + +G+  +h+ery+ +rEf+ev  rl++ge+vdf+Ge+++v+ga +l +p+q   +P+y++++s++++++aa
      EHU00024.1 100 TLDRLSDGRLLINVVTGGDPVENKGDGIflSHAERYQVTREFLEVYSRLLKGEKVDFHGEHIRVEGAEILFPPVQADgPPLYFGGSSDDAVDVAA 194
                     **********************************************************************9999988788*************** PP

  Bac_luciferase 184 rhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld..........fyaldsegagreaeaa... 265
                     + +d +l++gep e++a++++ +r++a+e+gr   ++  gi+l+viv++teeeA+a a++lia+ld          f+++ds g+ r+ +++   
      EHU00024.1 195 SQVDTYLTWGEPVEQVAAKLDVVRQRAQERGR---ALSYGIRLHVIVRETEEEAWAAADKLIAHLDdetiasaqkiFARMDSTGQARMSALHggs 286
                     ********************************...*****************************99**************************998 PP

  Bac_luciferase 266 eiqeeedanlwagaadavpdelvaatalvGtpeqvaerlaayaeagvd 313
                     +++++  +nlwag++ ++   ++a+talvG+p+qva+r+++y+++g+d
      EHU00024.1 287 REGLRIGPNLWAGVGLVR---GGAGTALVGNPQQVAARIREYQALGID 331
                     88***************9...*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2941.64
//
Query:       EHU00025.1  [L=629]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-67  225.2   0.0    7.2e-67  224.3   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
    1.4e-20   73.8   0.0      4e-20   72.3   0.0    1.8  1  Sigma54_activ_2  Sigma-54 interaction domain
    4.9e-13   49.5   0.0    7.5e-13   48.9   0.0    1.2  1  NMT1             NMT1/THI5 like
    1.1e-08   35.2   0.0    2.9e-08   33.8   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    4.2e-05   24.0   0.0    7.9e-05   23.1   0.0    1.5  1  AAA              ATPase family associated with various cellul
    0.00034   20.3   0.0    0.00055   19.6   0.0    1.4  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
     0.0007   19.1   0.0     0.0021   17.5   0.0    1.8  2  SBP_bac_3        Bacterial extracellular solute-binding prote
     0.0011   18.4   0.0     0.0024   17.3   0.0    1.5  1  NMT1_3           NMT1-like family
     0.0017   17.9   0.0      0.003   17.1   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
     0.0018   18.0   7.2       0.01   15.6   0.4    3.5  3  HTH_8            Bacterial regulatory protein, Fis family
     0.0032   17.7   0.3       0.05   13.9   0.0    2.9  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.016   14.6   0.0        2.1    7.7   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.018   14.2   0.0      0.037   13.1   0.0    1.5  1  MCM              MCM P-loop domain
      0.019   15.3   2.3      0.035   14.5   0.4    2.5  2  AAA_16           AAA ATPase domain
      0.042   14.0   0.0        0.1   12.7   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.073   12.9   0.1        0.2   11.5   0.0    1.9  2  AAA_3            ATPase family associated with various cellul
       0.17   11.5   0.0       0.29   10.7   0.0    1.5  1  OpuAC            Substrate binding domain of ABC-type glycine


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.3   0.0   6.8e-70   7.2e-67      13     167 ..      18     172 ..      10     173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 224.3 bits;  conditional E-value: 6.8e-70
                      HHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS- CS
  Sigma54_activat  13 eqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelp 106
                      + ++++a+td++vli Ge+GtGKe++ar +h++s+r+++pfvavnc+a++e+l eseLFGhekGaFtGA+++++G fe+a+gGtl+LDeigel+
       EHU00025.1  18 SILDRLAPTDATVLIIGETGTGKEVMARYLHHHSPRRRAPFVAVNCGALTESLAESELFGHEKGAFTGATERHRGWFEAAQGGTLLLDEIGELS 111
                      567899**************************************************************************************** PP

                      HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat 107 lelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      l lQ+kLlrvlqe+e++rvGss+ ikv+vr++aatn+dl+ a++e++fredLyyrlnv ++
       EHU00025.1 112 LPLQVKLLRVLQEREITRVGSSQAIKVNVRVLAATNRDLTGAIAERRFREDLYYRLNVASV 172
                      *********************************************************9876 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   3.8e-23     4e-20       9     138 .]      15     177 ..      11     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 3.8e-23
                      HHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTSEEEEEE-T CS
  Sigma54_activ_2   9 elkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakggtLylkdia 79 
                      ++k+ L+ +a   + v+++Ge G+gke++Ar+Lh+ s +  ++fv  ++++l+                         ++e a+ggtL+l +i 
       EHU00025.1  15 AFKSILDRLAPTDATVLIIGETGTGKEVMARYLHHHSPRRRAPFVAVNCGALTeslaeselfghekgaftgaterhRGWFEAAQGGTLLLDEIG 108
                      78999*********************************************98878899999999999999999999999999************ PP

                      T--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  80 dlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      +ls  +q +Ll +l++          a k ++r+ +++ +dl+  +++ +f e L+++L   ++++PpL
       EHU00025.1 109 ELSLPLQVKLLRVLQEreitrvgssqAIKVNVRVLAATNRDLTGAIAERRFREDLYYRLNVASVALPPL 177
                      ************************96559***************************************9 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   7.1e-16   7.5e-13      40     216 .]     394     566 ..     380     566 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 7.1e-16
                 CTS-SEEEE-H.HHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHH CS
        NMT1  40 sgkadfgvsyq.esllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakall 137
                   + dfg + + + l+a+ ++g  v         +  +l+v + s i++++DLkGkri+++++++   l+ ++l ++g++ +dv +v +      +a  
  EHU00025.1 394 DQEIDFGTTGEvPPLFAQADQGTMVYVAWEPPAPQSVALMVARHSAITTIADLKGKRIAVNKGSNVHFLVLQILDEAGLTLDDVRIVYAPPKYPLTASD 492
                 56778877765256667777888888888888888999*************************************************996555555666 PP

                 CTSSSEEECEETTTHHHHHH.HTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHHHHHHHHHSHHHH CS
        NMT1 138 tgkvDaaiggyenwegvele.segkelrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlkkGyeyalahPeea 216
                  + vDa++     w+ +  e ++g +lr++ ++ +g        + +  +++  +p+l++ +++Al++  +y+ ahP+ea
  EHU00025.1 493 LNAVDAWM----MWDPLLSEaERGDQLRVI-ADGVGR-VSNHQFYLADRQFATHSPDLLRLLMTALEQTGQYIDAHPAEA 566
                 66667665....566666551555555555.566665.6888999*********************************98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.7e-11   2.9e-08       2     122 ..      30     148 ..      29     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.7e-11
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE-...-TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvql...trdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerr 93 
                 vl++G++GtgK  +a++l +     +++++ v++   t+++ e++l+g+ + +  g t+++ + +   a +g +l+lDE+ +++   + +Ll++l er+
  EHU00025.1  30 VLIIGETGTGKEVMARYLHHHSprrRAPFVAVNCgalTESLAESELFGHEKGAfTGATERHRGWFE--AAQGGTLLLDEIGELSLPLQVKLLRVLQERE 126
                 89********************998888888865222788899********889*********998..6789999************************ PP

                 EE..-SSSEEE---......-EEEEEESS CS
       AAA_5  94 llleeggelvkaknddllerfrviatanp 122
                 +    + + +k++       +rv+a++n+
  EHU00025.1 127 ITRVGSSQAIKVN-------VRVLAATNR 148
                 **88888888775.......899999997 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   7.5e-08   7.9e-05       1     125 [.      30     160 ..      30     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.5e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeee 83 
                 vl++G  GtGK  +a+ + +++    ++f+ +++  l+++             + g++ ++ r+ f++a+       l++DEi +l             
  EHU00025.1  30 VLIIGETGTGKEVMARYLHHHSprrRAPFVAVNCGALTESlaeselfghekgaFTGAT-ERHRGWFEAAQG----GTLLLDEIGELSLPL--------- 114
                 799******************8655699**********77888997777777444444.445777776644....67*********7777......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESSGGGSTHHHHSTTSS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnrpdkldpallrgRfd 125
                   + +Ll++l++ +          + +v v++atnr  +l+ a+  +Rf 
  EHU00025.1 115 --QVKLLRVLQEREITrvgssqaiKVNVRVLAATNR--DLTGAIAERRFR 160
                 ..999*****99999999******888********9..455555534555 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.2e-07   0.00055      41     136 ..     387     476 ..     363     572 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.2e-07
                     HHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HH CS
  Phosphonate-bd  41 avvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpe 135
                     ++  alr +++D++ +g  + + a++ +g + + + ++    a  + ++ v++ s+i++++dLkgk+ia+    S   +lv +  L +eagl+++
      EHU00025.1 387 QLLHALRDQEIDFGTTGEVPPLFAQADQG-TMVYVAWE--PPAPQSVALMVARHSAITTIADLKGKRIAVNK-GSNVHFLVLQI-L-DEAGLTLD 475
                     67889***************999997655.55556665..235555668888889**************955.55554666555.8.9***9987 PP

                     H CS
  Phosphonate-bd 136 d 136
                     d
      EHU00025.1 476 D 476
                     5 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   1.6e+03     136     158 ..     380     402 ..     356     434 .. 0.70
   2 !   17.5   0.0     2e-06    0.0021      87     166 ..     430     509 ..     386     554 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.5
                 EEESSHHHHHHHHHTTSSSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 136 vefdtleealqaLkngrvdavva 158
                  ef+  +++l+aL++ ++d   +
  EHU00025.1 380 SEFPAGPQLLHALRDQEIDFGTT 402
                 37888889999999999987655 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2e-06
                 EEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC......TSEEEEESSHHHH.HHHHHTTSSSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  87 qvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk......gaeivefdtleea.lqaLkngrvdavvadspvlayl 166
                 ++l+v +++      i+++adLkgk+++v +gs+ + l+ + l +      +++i  ++  +   l+a   + vda+++ +p l ++
  EHU00025.1 430 VALMVARHS-----AITTIADLKGKRIAVNKGSNVHFLVLQILDEagltldDVRI--VYAPPKYpLTASDLNAVDAWMMWDPLLSEA 509
                 455665443.....466777**************997766655557676544444..444444446666667788888888888766 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.3e-06    0.0024      91     146 ..     428     481 ..     408     501 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.3e-06
      NMT1_3  91 evfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlkllee 146
                 + ++l+v++ s i++iadlkgkr++v ++gs  +  +++il+++gl+ +d+++  +
  EHU00025.1 428 QSVALMVARHSAITTIADLKGKRIAV-NKGSNVHFLVLQILDEAGLTLDDVRI-VY 481
                 56789999******************.56******************999986.34 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.8e-06     0.003      21      75 ..      15      69 ..      11      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.8e-06
       AAA_7 21 rysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsa 75
                 ++ +l+ l   +  vl++G+tGtGK v+++ l ++ ++++  ++ +n+ a t++
  EHU00025.1 15 AFKSILDRLAPTDATVLIIGETGTGKEVMARYLHHHSPRRRAPFVAVNCGALTES 69
                6788999**************************9999999999999999999987 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   9.6e-06      0.01      17      36 ..     295     314 ..     287     317 .. 0.89
   2 ?   -0.7   0.1       1.2   1.3e+03       9      18 ..     547     556 ..     546     557 .. 0.90
   3 ?    4.1   0.2     0.038        40      25      41 ..     571     587 ..     568     587 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.6e-06
                 TTT-HHHHHHHHTS-HHHHH CS
       HTH_8  17 tgGnkskAArlLGisRrtLy 36 
                 ++Gn+ +AA lLGisR +L+
  EHU00025.1 295 SQGNQLQAAALLGISRHSLR 314
                 79**************9998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                 HHHHHHHHTT CS
       HTH_8   9 lIeaALertg 18 
                 l++ ALe+tg
  EHU00025.1 547 LLMTALEQTG 556
                 89******98 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.038
                 HHHHTS-HHHHHHHHHH CS
       HTH_8  25 ArlLGisRrtLyrKLkk 41 
                 A++LG+s + L+  L++
  EHU00025.1 571 AKELGMSDSALRQALAR 587
                 9***********99976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.7e-05      0.05       8      52 ..      30      69 ..      25     129 .. 0.87
   2 ?   -0.1   0.1         1   1.1e+03      66     103 ..     569     606 ..     525     619 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.7e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.s 52
                ++++Ge+GtGK + +r l++  +++      r+++v v++ ++t s
  EHU00025.1 30 VLIIGETGTGKEVMARYLHHHSPRR------RAPFVAVNCGALTeS 69
                78**************999999887......*********999943 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1
      AAA_22  66 lelkaerlsseellealeqalraravielliiDEaqhl 103
                 l +k+ + s ++l++al++ ++++++  l ii E q++
  EHU00025.1 569 LLAKELGMSDSALRQALARRSHRTQAMNLAIIREQQRI 606
                 33333455778889888888888888788888888887 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        22      24      44 ..      29      49 ..      17      59 .. 0.87
   2 ?    7.7   0.0     0.002       2.1      93     166 ..      85     156 ..      76     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.021
  Mg_chelatase 24 nlllvGppGsGKtmlakrlps 44
                   +l++G  G+GK ++a+ l+ 
    EHU00025.1 29 TVLIIGETGTGKEVMARYLHH 49
                  689*************99976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.002
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkd 166
                   g ++ + G    a+ G L+LDE+ e++      L + l+++e+t  r  ++     ++ ++aa+N   +g +++
    EHU00025.1  85 GATERHRGWFEAAQGGTLLLDEIGELSLPLQVKLLRVLQEREIT--RVGSSQAIKVNVRVLAATNRDLTGAIAE 156
                   4556677888999**************99998888889998865..7777777778899999999888777665 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.6e-05     0.037      56     173 ..      26     148 ..      17     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
                 SS-EEEEEESSTSTHHHHHHHHHHHSSSEE..EEESS.SSSSSHSSSEE....EEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHH CS
         MCM  56 gdinvllvgdpgtaKsqlLkyveklaprav..ytsgk.gssaagLtaav....vrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEq 147
                 +d  vl++g+ gt+K  + +y+++ +pr    ++  + g+ ++ L  +      +   tg +  + G    a++G +++De+ + +   +++l+ ++ +
  EHU00025.1  26 TDATVLIIGETGTGKEVMARYLHHHSPRRRapFVAVNcGALTESLAESElfghEKGAFTGATERHRGWFEAAQGGTLLLDEIGELSLPLQVKLLRVLQE 124
                 5788********************99975411544431344444544430110333444445667899*****************************77 PP

                 SEEEEESSSCEEEEE--EEEEEEE-- CS
         MCM 148 qtisiaKaGivatLnartsvlaAanp 173
                  +  i++ G    ++  + vlaA+n 
  EHU00025.1 125 RE--ITRVGSSQAIKVNVRVLAATNR 148
                 75..5688888999999999***995 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   3.3e-05     0.035      14     116 ..      18     155 ..      15     284 .. 0.72
   2 ?   -1.6   0.1       2.8     3e+03     154     164 ..     544     554 ..     515     609 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.................ipysa.laqalareellrqlldeaesael 94 
                 s+l+r++  +   vl++Ge G+GK  ++r l+++  ++++ f++ +c  l+++                 +++   + +a+   +ll ++  e    + 
  EHU00025.1  18 SILDRLAPTD-ATVLIIGETGTGKEVMARYLHHHSPRRRAPFVAVNCGALTESlaeselfghekgaftgaTERHRgWFEAAQGGTLLLDEIGE----LS 111
                 5666666555.69***********************999888888888883333333333333333333333333344444333333333333....22 PP

      AAA_16  95 eawrekleeala......................avpelagaea 116
                  + + kl+++l+                        ++l+ga+a
  EHU00025.1 112 LPLQVKLLRVLQereitrvgssqaikvnvrvlaaTNRDLTGAIA 155
                 23333333333344444444666665655555554445555554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.8
      AAA_16 154 llaaLlrlles 164
                 ll++L+++le+
  EHU00025.1 544 LLRLLMTALEQ 554
                 44444444433 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-05       0.1       5     105 ..      29     124 ..      26     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.7e-05
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVq 96 
                 ++l++g+tg+Gk+ +a+ l  +   +++ +++ +++ +l+e           +   +  +  + g  +a++gG +llDEi   +              q
  EHU00025.1  29 TVLIIGETGTGKEVMARYLHHHSP-RRRAPFVAVNCGALTEslaeselFGHEKGAFTGATERHRGWFEAAQGGTLLLDEIGELSL-----------PLQ 115
                 7899*******************9.9***************65542221122333444444556677899999*******77666...........566 PP

                 HHHHHHHH- CS
       AAA_2  97 rdLLqileg 105
                   LL++l +
  EHU00025.1 116 VKLLRVLQE 124
                 666666655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019       0.2      64     111 ..     100     147 ..      29     154 .. 0.76
   2 ?   -3.6   0.1       8.8   9.3e+03      70      90 ..     584     604 ..     577     609 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
       AAA_3  64 nllladeinrappktqsalleameerqvtvegethklpepflvlatqn 111
                   ll dei   +   q  ll +++er++t  g++++++ +  vla+ n
  EHU00025.1 100 GTLLLDEIGELSLPLQVKLLRVLQEREITRVGSSQAIKVNVRVLAATN 147
                 46899***************************************9988 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.8
       AAA_3  70 einrappktqsalleameerq 90 
                  + r + +tq+  l +++e+q
  EHU00025.1 584 ALARRSHRTQAMNLAIIREQQ 604
                 567888999999999998887 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028      0.29      27     135 ..     373     462 ..     345     551 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                 TTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHHHTTTBHHHHCTHHGGTEEEEEHHCCH CS
       OpuAC  27 kGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaekygiksisDLkkpaedlelgakgeflg 125
                 +++ v + ++ +++ l  al++ +iD+ +   tg     +++a++ ++ ++v+++ +a    +l+v +       i++i+DLk +  +           
  EHU00025.1 373 QNVRVLWSEFPAGPQLLHALRDQEIDFGT---TGEVPPLFAQADQ-GTMVYVAWEPPAPQSVALMVARHS----AITTIADLKGKRIA----------- 452
                 45567788899999999************...9998888888555.777777799***********9886....********655554........... PP

                 STTSHHCCHH CS
       OpuAC 126 rpdgwgcekv 135
                  + g++++ +
  EHU00025.1 453 VNKGSNVHFL 462
                 4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4592.04
//
Query:       EHU00026.1  [L=234]
Description: putative ABC-type transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-16   61.3   0.0    1.5e-16   61.0   0.0    1.1  1  NMT1            NMT1/THI5 like
    1.9e-13   50.7   0.2    2.6e-13   50.2   0.2    1.2  1  NMT1_2          NMT1-like family
      1e-09   38.4   0.7    1.5e-09   37.8   0.7    1.2  1  OpuAC           Substrate binding domain of ABC-type glycine 
    3.6e-08   33.2   0.0    5.4e-08   32.6   0.0    1.3  1  NMT1_3          NMT1-like family
      2e-07   30.9   0.1    5.8e-07   29.3   0.1    1.8  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    2.5e-07   30.4   0.0    3.6e-07   29.8   0.0    1.2  1  SBP_bac_3       Bacterial extracellular solute-binding protei
     0.0088   15.9   0.4      0.014   15.3   0.2    1.5  2  ETF             Electron transfer flavoprotein domain
  ------ inclusion threshold ------
      0.062   12.8   0.0      0.088   12.3   0.0    1.2  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   6.8e-20   1.5e-16      56     215 ..      12     167 ..       2     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 6.8e-20
                 HHHTT--EEEEEEEE-S-.-EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHH CS
        NMT1  56 arakglpvvsvaallqep.lsglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenweg 153
                 a+a+++++v ++    +p +++++v +ds iks+kDLkGkr+++++++  ++ll + l+++g++++d+t v     ++ +a+ +g vDa++     w+ 
  EHU00026.1  12 AQAAQADLVYLGHSPANPqTEAIVVPADSTIKSVKDLKGKRVALNKGSDVNYLLVTALEQAGLTYKDITPVYLPPADARAAFQRGAVDAWV----IWDP 106
                 566666677776665544278999****************************************************************998....4567 PP

                 HHHHHTT-.-EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHHHHHHHHHSHHH CS
        NMT1 154 velesegk.elrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlkkGyeyalahPee 215
                 + +e e+  ++r ++ a+  vp y  + + ++ k+++ +pe++k++l Al++   +a  h ++
  EHU00026.1 107 YLAEVETTaHARLLKNAEGLVPHY--TFFLASRKFADGHPETAKQVLNALSQLSTWANSHQAD 167
                 777766554888888888888655..7999********************9988888887765 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.2   1.2e-16   2.6e-13     119     252 ..      46     172 ..      16     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.2e-16
      NMT1_2 119 kas.kplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqelwkdhPekvlgvredf 216
                 k + k+ ++a   +gs  ++ll ++L++aGl   +d++ v +pp+++ a++++g +d+++  +P+ a  +     + +   + l +   ++++ ++++f
  EHU00026.1  46 K-DlKGKRVAL-NKGSDVNYLLVTALEQAGLTY-KDITPVYLPPADARAAFQRGAVDAWVIWDPYLAEVETTAHARLLKNAEGLVPH--YTFFLASRKF 139
                 2.237888888.899*****************9.*******************************9999977776777777777555..788******* PP

      NMT1_2 217 veknpntaralvkalleAtkwldakkenraeaakll 252
                 ++ +p+ta+++++al + + w +    ++a+aak+l
  EHU00026.1 140 ADGHPETAKQVLNALSQLSTWANS---HQADAAKIL 172
                 ***********************4...566666665 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.7   6.6e-13   1.5e-09      72     230 ..      15     159 ..       4     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.6e-13
                 HHHEEEEEEEESEE.ECEEEEEEHHHHHHHTTTBHHHHCTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHHHHHHHHHTT CS
       OpuAC  72 ekkglevlgplgag.nteglavpkyvaekygiksisDLkkpaedlelgakgeflgrpdgwgcekvtegllkaYgldkvelvegseaamdaelyaaykrg 169
                 ++ +l+ lg+++a+  te+++vp++     +iks++DL           kg+ ++ + g+ ++++  ++l++ gl +++++   +    a++ aa++rg
  EHU00026.1  15 AQADLVYLGHSPANpQTEAIVVPADS----TIKSVKDL-----------KGKRVALNKGSDVNYLLVTALEQAGL-TYKDI-TPVYLPPADARAAFQRG 96 
                 457777788888873589*****885....********...........89999*********************.89998.3333334499******* PP

                 CSSEEEEETTSTHHHHT..TEEE-B-TTSTS-SSEEEEEEEEHHHHHHSCT.HHHHHHHHC.--H CS
       OpuAC 170 epvvvyawtPdwaikky..dlvvLedpkglfppaynvvpvvrkefaekaPe.vaafLekls.ldt 230
                  +++  +w P  a  +   + ++L++ +gl p   +   +++++fa+ +Pe ++++L++ls l+t
  EHU00026.1  97 AVDAWVIWDPYLAEVETtaHARLLKNAEGLVPH--YTFFLASRKFADGHPEtAKQVLNALSqLST 159
                 ************99998778************9..56678888****************998654 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.4e-11   5.4e-08      73     166 ..      11     103 ..       1     121 [. 0.85

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.4e-11
      NMT1_3  73 fegkkplknlraitml..yaevfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaal 166
                 f++ + +++l +++    +++++++vv +ds+i+s++dlkgkrv++ ++gs  +    + le +gl++kd+++  +l ++++  a+++g +d+ ++
  EHU00026.1  11 FAQ-AAQADLVYLGHSpaNPQTEAIVVPADSTIKSVKDLKGKRVAL-NKGSDVNYLLVTALEQAGLTYKDITP-VYLPPADARAAFQRGAVDAWVI 103
                 665.5677777777653377889***********************.559999999***************97.9*****************9877 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   2.6e-10   5.8e-07      88     220 ..      33     161 ..      10     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.6e-10
                     EEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTE CS
  Phosphonate-bd  88 viivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdel 182
                     +i+v+ads+i+s++dLkgk++a+   s +  yl+  a L ++agl+  +d+++v+    d a +a  +g +da ++++  l +++ +     +  
      EHU00026.1  33 AIVVPADSTIKSVKDLKGKRVALNKGSDVN-YLLVTA-L-EQAGLTY-KDITPVYLPPAD-ARAAFQRGAVDAWVIWDPYLAEVETT-----AHA 117
                     79*********************8877766.888888.9.9*****7.589***998555.677889********999988888655.....578 PP

                     EEEEEEE.EEE--EEEEETT....S-HHHHHHHHHHHHH---.S CS
  Phosphonate-bd 183 rviassp.pipndpvvvrke....lseelkekiqdallslae.t 220
                     r+++  + ++p ++++  ++      +e+ +++ +al +l++ +
      EHU00026.1 118 RLLKNAEgLVPHYTFFLASRkfadGHPETAKQVLNALSQLSTwA 161
                     88888884457777666655564445888889999998888743 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.6e-10   3.6e-07      86     178 ..      31     123 ..      20     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.6e-10
                 EEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEEE.ESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  86 gqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk....gaeive.fdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv 178
                 +++++v+++     s+iks++dLkgk+v+  +gs    ll  +l++      +i++ +   ++a +a + g vda+v  +p la++ ++  +  ++ +
  EHU00026.1  31 TEAIVVPAD-----STIKSVKDLKGKRVALNKGSDVNYLLVTALEQagltYKDITPvYLPPADARAAFQRGAVDAWVIWDPYLAEVETTAHARLLKNA 123
                 678999944.....4899999************99665544444445666667775488999999*******************99988888888874 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.5     1e+04      87      98 ..      14      25 ..      11      34 .. 0.53
   2 !   15.3   0.2   6.3e-06     0.014      41     114 ..      85     160 ..      58     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.5
                HC--SEEEEESS CS
         ETF 87 kedpdlvlagat 98
                + ++dlv +g++
  EHU00026.1 14 AAQADLVYLGHS 25
                334555555544 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.3e-06
                 ES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC.--SEEEEESSCC.H.....HHHHHHHHHHCT- CS
         ETF  41 GppeaeealrealaamGadkvilvddpalagydaeatakalaalikke.dpdlvlagatai.g.....kqvaprlAalLgv 114
                  p   ++  r+a + +Ga ++++++dp la+ ++ a a++l+++      ++ +la ++   g     kqv+  l++l  +
  EHU00026.1  85 PP---AD-ARAAFQ-RGAVDAWVIWDPYLAEVETTAHARLLKNAEGLVpHYTFFLASRKFAdGhpetaKQVLNALSQLSTW 160
                 55...22.255555.***************************998888778888888888877888888888888877665 PP

>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.9e-05     0.088      17      61 ..      28      70 ..      22     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.9e-05
  PS_Dcarbxylase 17 dddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgease 61
                    +++ +aiv PaD++i ++++++ ++v   Kg++  ++ Ll  a e
      EHU00026.1 28 NPQTEAIVVPADSTIKSVKDLKGKRVALNKGSD--VNYLLVTALE 70
                    455667**********************99998..5555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1808.52
//
Query:       EHU00027.1  [L=179]
Description: peptide methionine sulfoxide reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-62  207.7   0.1    1.1e-61  207.5   0.1    1.0  1  PMSR      Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.5   0.1     6e-66   1.1e-61       2     152 ..       6     156 ..       5     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.5 bits;  conditional E-value: 6e-66
                 EEEE-S-HHHHHHHHCTSTTEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEESSC CS
        PMSR   2 avlagGCFWgveklfeklkGvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyytne 100
                 av+agGCFW++e++f+++ Gv+s+e+GY+gG+ +nptYe+vcsg+tghaEa+++ +dpekvs+ +ll++ f +hDptqlnrqgnD+GtqYrsai+ +++
  EHU00027.1   6 AVIAGGCFWCTEAVFKDVIGVESVESGYTGGERPNPTYEQVCSGATGHAEAIRIGFDPEKVSYGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPETP 104
                 799************************************************************************************************ PP

                 CHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TTS..-- CS
        PMSR 101 eqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpeg..yc 152
                 eq+++a+++++++q++  ++k+ivt+ieplk +y+ae yHq+Y e   ++  yc
  EHU00027.1 105 EQEAEARAAIARAQQD--HDKPIVTTIEPLKAWYPAEGYHQDYWEGAGQRngYC 156
                 ****************..*************************98765544488 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1390.26
//
Query:       EHU00028.1  [L=39]
Description: hypothetical protein CKS_1864 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 328.28
//
Query:       EHU00029.1  [L=355]
Description: sensory histidine kinase in two-component regulatory system with BasR [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-15   56.6   0.2    7.1e-15   55.5   0.0    1.7  2  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
      5e-09   36.1   4.1    5.4e-09   36.0   1.9    2.3  3  HisKA      His Kinase A (phospho-acceptor) domain
     0.0052   17.1   0.2      0.039   14.3   0.0    2.6  3  HAMP       HAMP domain
  ------ inclusion threshold ------
      0.099   12.8   0.0       0.23   11.6   0.0    1.7  1  VMA21      VMA21-like domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.2     1e+04     100     111 ..       6      17 ..       3      18 .. 0.79
   2 !   55.5   0.0   1.6e-18   7.1e-15       1      98 [.     248     341 ..     248     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
                 TEEEEEEEEESS CS
   HATPase_c 100 rGttftftlple 111
                  Gtt++f+l l+
  EHU00029.1   6 TGTTMRFRLLLT 17 
                 69*****99876 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 1.6e-18
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd + Lr +++nlv+Na ++++++++i+v+++ +    ++ veD G Gi+++ + +l ++f++    ++++gg GlGlsiv ++v+l++G++ +e++ 
  EHU00029.1 248 GDAILLRMLLRNLVENAHRYSPSESNITVRLENT-LGPTLIVEDEGDGIDESRRGELSKAFVR---MDTRYGGIGLGLSIVSRIVQLHHGQFLLENRL 341
                 68899***************99**********54.488999**************9999***9...7789********************99886665 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.9   1.3e+04      34      53 ..      37      56 ..      23      59 .. 0.67
   2 ?   -1.9   0.0      0.81   3.6e+03      44      53 ..     125     134 ..      98     145 .. 0.56
   3 !   36.0   1.9   1.2e-12   5.4e-09       3      63 ..     144     198 ..     142     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.9
                HSSCHHHHHHHHHHHHHHHH CS
       HisKA 34 teelkeyletiesearrldh 53
                ++e+ ++l  ++ + r +d+
  EHU00029.1 37 SQEQVQFLVEAHLHNRNMDR 56
                45566666666666666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.81
                 HHHHHHHHHH CS
       HisKA  44 iesearrldh 53 
                 +  +++rl +
  EHU00029.1 125 VTHSVNRLVA 134
                 2223333332 PP

  == domain 3  score: 36.0 bits;  conditional E-value: 1.2e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsr 63 
                 + f+a+vaHELrtPL+++++ +e+L+r       ++   + +    ++++  v +lL+l+r
  EHU00029.1 144 RLFTADVAHELRTPLAGLRLHLELLQRN------QAVDTQPLLHRLDQMTGNVAQLLQLTR 198
                 579************************4......555555555555555555555555555 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.6e-06     0.039       3      52 ..      88     137 ..      87     138 .. 0.89
   2 ?   -3.1   0.0       2.5   1.1e+04      10      25 ..     193     208 ..     190     216 .. 0.74
   3 ?   -1.9   0.0         1   4.6e+03      38      47 ..     301     310 ..     295     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-06
                 HHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldrLr 52 
                 +r+i+rPL +L r  ++ ++ +l++ ++   +  Ei+++ +++N+++ rL 
  EHU00029.1  88 VRWITRPLYQLQRELENRSEVNLEP-ITFsGSVQEIDAVTHSVNRLVARLT 137
                 79*****************645444.99988*****************996 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHTTTBT CS
        HAMP  10 LrrLaraarriaaGdl 25 
                 L +L+ra ++  +G +
  EHU00029.1 193 LLQLTRAGQQFTSGSY 208
                 7789999888888865 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1
                 HHHHHHHHHH CS
        HAMP  38 GeLarafNaM 47 
                 GeL +af +M
  EHU00029.1 301 GELSKAFVRM 310
                 7899999888 PP

>> VMA21  VMA21-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.23       3      37 ..      66     100 ..      64     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
       VMA21   3 ikkLllfsllmvtlPlasfftskhllfegvfglsn 37 
                 +  L l sl+m+tlPl++ +  + +++  + +l++
  EHU00029.1  66 VMSLALPSLVMITLPLLLCYQAVRWITRPLYQLQR 100
                 6678999******************9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2949.11
//
Query:       EHU00030.1  [L=228]
Description: DNA-binding response regulator in two-component regulatory system with BasS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-25   88.8   0.1    3.7e-25   88.3   0.1    1.2  1  Response_reg  Response regulator receiver domain
    9.1e-21   73.7   0.6    3.2e-20   72.0   0.0    2.1  3  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0044   17.4   0.0     0.0063   16.9   0.0    1.3  1  FleQ          Flagellar regulatory protein FleQ
  ------ inclusion threshold ------
       0.11   12.2   0.1        0.2   11.3   0.1    1.4  1  DUF1891       Domain of unknown function (DUF1891)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   8.2e-29   3.7e-25       1     112 []       3     113 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 8.2e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+Dd l++++l  +le  gy +++++++ ++a ++l +  + li+lD+ +p+ dGl++l+++r++++  pv+ilta+++ ++++++l+agadd+
    EHU00030.1   3 ILIVEDDALLLQGLVLALEGTGY-VCDAVSTVRSAEAHLASGLYSLIVLDVGLPDEDGLHFLQRLRRQKQMQPVLILTARDTIDERIAGLDAGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l Kpf+ +eLl++++
    EHU00030.1  99 LIKPFALDELLARIR 113
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       2.7   1.2e+04      53      71 ..      66      81 ..      64      83 .. 0.58
   2 ?   -1.6   0.0      0.66     3e+03      45      60 ..     104     119 ..      93     128 .. 0.74
   3 !   72.0   0.0   7.1e-24   3.2e-20       4      77 .]     148     216 ..     144     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.7
                 HHHHHHTTTTSSSSEEEET CS
  Trans_reg_C 53 LRkkLeddekkprlIetvr 71
                 LR+     + +p lI t r
   EHU00030.1 66 LRRQK---QMQPVLILTAR 81
                 44433...33678888876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.66
                  HHHHHHHHHHHHHHTT CS
  Trans_reg_C  45 tvdvhisrLRkkLedd 60 
                  ++d   +r+R  ++ +
   EHU00030.1 104 ALDELLARIRALIRRH 119
                  6888888999888774 PP

  == domain 3  score: 72.0 bits;  conditional E-value: 7.1e-24
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++ltpkef++L  L+ ++g++v re L++ +++ d++++++t++vhi++LR+k+++     ++I+tvrg GY l
   EHU00030.1 148 LDLTPKEFSILSRLMLKAGHPVHRELLYQDIYNFDNEPSTNTLEVHIHNLRDKIGK-----SMIRTVRGFGYAL 216
                  78******************************************************.....7**********86 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0063       1      82 [.       2      86 ..       2     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs..sleealealaekdphlPvlllgesdea.e 82
                kiL+++dda   + l   Le  g  + avs    ++a   s  ++l+v+          + l++l ++++ +Pvl+l+ +d+  e
  EHU00030.1  2 KILIVEDDALLLQGLVLALEGTGYVCDAVSTVRSAEAHLASGLYSLIVLDVGLPdeDGLHFLQRLRRQKQMQPVLILTARDTIdE 86
                7*****************************999988888887777777766655577899******************9998744 PP

>> DUF1891  Domain of unknown function (DUF1891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.5e-05       0.2      16      40 ..      60      84 ..      59      85 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
                XXXXXXXXXXSS.....SHTTTTT- CS
     DUF1891 16 lyFLRkLkKanlpqrLLvlfyhetI 40
                l+FL +L++ +  q++L+l  + tI
  EHU00030.1 60 LHFLQRLRRQKQMQPVLILTARDTI 84
                8*****************9999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1748.37
//
Query:       EHU00031.1  [L=262]
Description: trehalose-6-phosphate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-46  159.0   0.0    1.2e-46  158.7   0.0    1.0  1  Trehalose_PPase  Trehalose-phosphatase
    1.8e-07   31.2   0.0     0.0048   16.7   0.0    2.1  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0   1.4e-50   1.2e-46       1     231 [.      22     236 ..      22     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 1.4e-50
                      EEETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHHHHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHHH CS
  Trehalose_PPase   1 flDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslkeeellvkvpelglaaeHGaeirspsgedwenqaevedlewlkevke 94 
                      f+D dGTl  i ++pdaa+++++++  L++L+s +++++a+vSGr +++ ++l+ +   + a+ HGae+r+ +g+ +     ++  e  +++k+
       EHU00031.1  22 FFDVDGTLAAIQPQPDAAFIPKQVVAELQRLSSLCHGALALVSGRPVEQLDALAAPLHAPAAGVHGAERRDAEGKVHRV---SLPEETERQLKQ 112
                      89************************************************************************88887...666677799*** PP

                      HHHHHHTTSTT-EEEEETTEEEEE-TT--TT..THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS--------EEEEE CS
  Trehalose_PPase  95 ileektertpGsyiEekkfalsvHyrnaddeelqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsadseddfvlci 188
                      +le++++++p +++E+k++a+++Hyr+a  +    ++++   + ++++  +l ++ gk+vve++p+g  KG+av++++++ ++a    +++++i
       EHU00031.1 113 MLEAEMAHWPDTQLEAKGMAFALHYRRAMAH---EQDILHLAQAAVERFSGLTLQPGKCVVEIKPTGIDKGAAVQAFMQEAPFA---GRIPVFI 200
                      *****************************99...6666666666666667*********************************9...******* PP

                      E-SSTTHHHHTTS-TT...-EEEEE--TTS---EES-SEEESS CS
  Trehalose_PPase 189 GDdrtDedmFsvlrktkesgvsievsavevgskpskakyslds 231
                      GDd+tDe+ F++++    +g+s++v+  e     s+a+y+l +
       EHU00031.1 201 GDDLTDEKGFAAVNAM--HGISVKVGEGE-----SQARYRLHD 236
                      ***************8..****9999987.....777777765 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.4e-07    0.0048       1      92 [.      21     115 ..      21     147 .. 0.83
   2 !   13.3   0.0   5.9e-06     0.052     157     243 ..     150     238 ..     106     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.4e-07
                  EEEEIIIIIS-.....TTS---HHHHHHHHHHHH.TTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHH CS
  Hydrolase_3   1 ialDlDGTLln.....sdkkisektkeaikklke.kgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllk 92 
                  +++D+DGTL       +   i+++ ++ +++l++     +++ +GR+++++  ++  l+   p+ +++Ga  +d++gk+  + ++++e+ +++ + l+
   EHU00031.1  21 FFFDVDGTLAAiqpqpDAAFIPKQVVAELQRLSSlCHGALALVSGRPVEQLDALAAPLH--APAAGVHGAERRDAEGKVH-RVSLPEETERQLKQMLE 115
                  59*******99889955555**************544579****************999..8999999*99967666665.66777777666666665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.9e-06
                  HHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHS....SEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3 157 lekelksklnklltitssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaa....glgvAmgnaseevkkaAdyvt 243
                  l+++  ++++    + + +k ++ei p g++Kg a++++++e  +     + +GD+  D + + a+    g++v +g ++ ++    + vt
   EHU00031.1 150 LAQAAVERFSG--LTLQPGKCVVEIKPTGIDKGAAVQAFMQEAPFAGRIPVFIGDDLTDEKGFAAVnamhGISVKVGEGESQARYRLHDVT 238
                  55555555544..4667788899************************************99999888888888888888887776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1921.75
//
Query:       EHU00032.1  [L=478]
Description: trehalose-6-phosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-138  461.6   0.0   3.1e-138  461.4   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.4   0.0  1.7e-142  3.1e-138      28     473 ..      18     456 ..       2     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 461.4 bits;  conditional E-value: 1.7e-142
                      CCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHHHHCHHHHHTT-GG....G----HHHH CS
  Glyco_transf_20  28 kkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfsksvLWpllHYklpdsseekefersaw 121
                      k s+ggl++ +  + ++t ++w+gw g+ ++ s e+++ vs + ++ ++++ + ls+++++ yy +fs+ v+Wp +HY+l+      +f+r+aw
       EHU00032.1  18 KTSAGGLAVGILDALKSTGGLWFGWNGEISEFSGEEENPVSVTEHDGIEYASFPLSQNEYDLYYCQFSNTVIWPAFHYRLD----LVQFQREAW 107
                      67999**9999999999*************9999999********************************************....9******** PP

                      HHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTTSEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHH CS
  Glyco_transf_20 122 daYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkledakigfflHiPFPsseifriLpvreeilegllgadliGFhtedyarhFlsc 215
                      + Y +vn + A+++   ik++d++w+hDYh + ++  lR+   +++igfflHiPFP+ eif++Lp ++e+le l+++dl+GF+te++   Fl++
       EHU00032.1 108 EGYCEVNDAVAQRLKPLIKPDDILWIHDYHFLPFAAALRRAGINNRIGFFLHIPFPTPEIFNALPPHRELLEMLCEYDLLGFQTESDRVAFLDS 201
                      ********************************************************************************************** PP

                      HHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEEEC-GGG-HHHHHHHHHHHHHH-GGGT CS
  Glyco_transf_20 216 csrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkklilgvDrlDyikGvkqkllaferfLeeypelr 309
                      +s+l++l+ + +++ ++++g+++ ++++pigi+++++++ ++  ++  k++ +k+++++ ++ i+  +rlDy+kG+++++la+e +Le+yp+++
       EHU00032.1 202 VSQLTQLQNKGDKK-HRAYGNTFMTEVYPIGIEPDSIKEMAE-GPLPPKMAAMKKELGD-VRNIIACERLDYSKGLPERFLAYEALLENYPQHH 292
                      ************76.**********************99877.99************77.8********************************* PP

                      TTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH-SEEEE--SSBSS-CHHHHHHHCSTT.T--E CS
  Glyco_transf_20 310 gkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaaadvllvtslRdGmnlvakeyvvcqqe.kkgv 402
                      g++ + qia++sr+dv++yq++++++e  +grINg++gtl++tP++yl++++d++ l+++++ +dv lvt+lRdGmnlvakeyv++q+  + gv
       EHU00032.1 293 GRIRYSQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGTLGWTPLYYLNQHFDRRLLMKIFRLTDVGLVTPLRDGMNLVAKEYVAAQDPdDPGV 386
                      ***************************************************************************************98689** PP

                      EEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  Glyco_transf_20 403 LiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflselk 473
                      L+LS+FaGaa++L++ a++vNP+d +eva+a+++a++m+ +er +r + +++ + k+d++ W e+fl++l+
       EHU00032.1 387 LVLSRFAGAANELTS-ALIVNPYDRDEVAAALDKAITMPRTERISRYNDMMAVLRKNDITAWRENFLRDLE 456
                      **************6.6****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3633.29
//
Query:       EHU00033.1  [L=46]
Description: hypothetical protein CKS_1859 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 380.61
//
Query:       EHU00034.1  [L=116]
Description: DNA-binding transcriptional dual regulator with FlhC [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-40  136.1   2.8    5.1e-40  135.9   2.8    1.0  1  FlhD      Flagellar transcriptional activator (FlhD)
    0.00091   19.0   0.9     0.0011   18.8   0.9    1.1  1  DUF2857   Protein of unknown function (DUF2857)


Domain annotation for each model (and alignments):
>> FlhD  Flagellar transcriptional activator (FlhD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   2.8   5.7e-44   5.1e-40       1     100 [.       1     100 [.       1     102 [. 0.98

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 5.7e-44
        FlhD   1 mkteellkeirevNLsYLlLaqrllredkaaalfrLgiseevadllakLslaqlvklassnqllcrfrlddeallslltneskeealaqlhaaillagq 99 
                 m t+ellk+i+++NLsYLlLaqrl++++ka+a+frLgi+e++ad l++L+l ++vkla++nql+c+fr+ d+++++ lt+es+ ++l+q+h+ ill+++
  EHU00034.1   1 MGTSELLKHIYDINLSYLLLAQRLINQEKASAMFRLGIDEKMADALSELTLPEMVKLAETNQLVCQFRFTDSTVINRLTQESRVDDLQQIHTGILLSSR 99 
                 889**********************************************************************************************98 PP

        FlhD 100 a 100
                  
  EHU00034.1 100 L 100
                 6 PP

>> DUF2857  Protein of unknown function (DUF2857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.9   1.2e-07    0.0011       4      75 ..      17      88 ..      14     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-07
     DUF2857  4 vLtqllellkeGdlrrceelGfseeeldaLkqlsledlhalsnsrvsvlkvsvdhealrrlLkqareeeere 75
                +L  + +l+ +++  ++  lG++e++ daL++l+l ++ +l++++  v+++++  +++ + L+q  +  + +
  EHU00034.1 17 YLLLAQRLINQEKASAMFRLGIDEKMADALSELTLPEMVKLAETNQLVCQFRFTDSTVINRLTQESRVDDLQ 88
                566677889999999999***********************************8887777777776665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1056.99
//
Query:       EHU00035.1  [L=192]
Description: DNA-binding transcriptional dual regulator with FlhD [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-80  268.1   0.0    3.1e-80  267.9   0.0    1.0  1  FlhC      Flagellar transcriptional activator (FlhC)


Domain annotation for each model (and alignments):
>> FlhC  Flagellar transcriptional activator (FlhC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.0   1.7e-84   3.1e-80       1     172 [.       1     172 [.       1     173 [. 0.99

  Alignments for each domain:
  == domain 1  score: 267.9 bits;  conditional E-value: 1.7e-84
        FlhC   1 mkkksvlqeakeiqlAielielGARlqvlesetslsrerliklykevkgvsppkGmlPfstdWfltwqpnihsslflniyrflkkeaelkkiealvkay 99 
                 m +ks++qea++iqlA+eli+lG Rlq+leset+lsr rliklyke++g +ppkGmlPfstdWf+tw++nih+s+f+n+++fl k+   k+i+a++kay
  EHU00035.1   1 MGEKSIVQEARDIQLAMELITLGVRLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWTFLLKTGLSKGIDAVIKAY 99 
                 779************************************************************************************************ PP

        FlhC 100 rlYleqveaeeeepvlsltRAwtlvrfveskllqlasCkrCkgefvthaedlesefvCglCqlpsRagktkka 172
                 rlYleq+ +++e p+l+ltRAwtlvrfves++l+l+ Ck+C+g+f+ ha+++  +fvC+lCq+psRa+k++k 
  EHU00035.1 100 RLYLEQCPQSDEGPLLALTRAWTLVRFVESGMLELSDCKCCSGSFINHAHQPVGSFVCSLCQPPSRAVKRRKL 172
                 **********************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1553.10
//
Query:       EHU00036.1  [L=295]
Description: proton conductor component of flagella motor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-11   43.3   0.3    4.6e-11   42.6   0.3    1.4  1  MotA_ExbB   MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
        0.1   12.7   0.4       0.33   11.0   0.1    1.9  2  Podoplanin  Podoplanin
          1    9.7   8.5        2.5    8.4   2.4    2.3  2  SpoVAB      Stage V sporulation protein AB


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.3   7.6e-15   4.6e-11      19     126 ..     135     239 ..     118     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7.6e-15
                 -HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
   MotA_ExbB  19 vdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalGlvvA.ipavlaynklkr 116
                 + + +  e++  ++e+++  e++ e  ++ +a++g   P++G++ +V+G+++a+ + +    + +a+++  +a A++ T+lG+++A  ++ +++++l++
  EHU00036.1 135 SGNMNAFEIEALMDEEIETYEHECEVPAQSIAAVGDGLPAFGIVAAVMGVVHALASADR---P-AAELGALVAHAMVGTFLGILLAyGFISPLASVLRQ 229
                 45567779999*********************************************666...5.69********************99*********** PP

                 HHHHHHHHHX CS
   MotA_ExbB 117 kverlvlele 126
                 k+ + ++ ++
  EHU00036.1 230 KCAETTKMMQ 239
                 **99998886 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.32   1.9e+03     123     142 ..     169     188 ..     160     192 .. 0.84
   2 ?   11.0   0.1   5.6e-05      0.33     122     155 ..     197     230 ..     184     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.32
                 XXXXXXXXXXXXXXXXXXXX CS
  Podoplanin 123 kdGLatvtLvgiivGvllai 142
                  dGL    +v  ++Gv+ a+
  EHU00036.1 169 GDGLPAFGIVAAVMGVVHAL 188
                 58999999999999999776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin 122 ekdGLatvtLvgiivGvllaigfiggiiivvvrk 155
                 e + L   ++vg  +G+lla gfi+ + +v+ +k
  EHU00036.1 197 ELGALVAHAMVGTFLGILLAYGFISPLASVLRQK 230
                 66789999*****************999888776 PP

>> SpoVAB  Stage V sporulation protein AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.4   0.00042       2.5      23      96 ..       5      81 ..       1      87 [. 0.82
   2 ?    4.7   0.4    0.0059        35      28      66 ..     177     215 ..     171     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00042
      SpoVAB 23 yeeavilGavlgnllsvf..eiklplgaillallglfaGiF.vGclalaLaEvlnvlpilarriklkkglgililal 96
                +  +v+lG+vlg ++ v     +l  +a ll+++g  +G F vG    ++  +l++lp l+r  k +k + + ++al
  EHU00036.1  5 LGYIVVLGSVLGGYALVGghLGALYQPAELLMIAGAGVGAFlVGNNGKSIKKTLKALPLLFRGSKYNKAVYMDLMAL 81
                5668999****999999532344555578999********978*******************999999888777665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0059
      SpoVAB  28 ilGavlgnllsvfeiklplgaillallglfaGiFvGcla 66 
                 i+ av+g +  + +   p+ ++ ++++  ++G F+G+l 
  EHU00036.1 177 IVAAVMGVVHALASADRPAAELGALVAHAMVGTFLGILL 215
                 667888888889999999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2178.40
//
Query:       EHU00037.1  [L=419]
Description: MotB family flagellar motor rotation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-20   73.1   0.4    2.5e-20   71.8   0.4    1.7  1  MotB_plug    Membrane MotB of proton-channel complex MotA/Mot
    9.6e-14   51.5   0.0      3e-13   49.9   0.0    1.9  1  OmpA         OmpA family
  ------ inclusion threshold ------
        6.6    6.2   7.9         11    5.5   7.9    1.3  1  DUF572       Family of unknown function (DUF572)
        7.3    6.4  13.3         50    3.7  13.1    2.2  1  CCDC24       Coiled-coil domain-containing protein 24 family


Domain annotation for each model (and alignments):
>> MotB_plug  Membrane MotB of proton-channel complex MotA/MotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.4   5.6e-24   2.5e-20       1      57 [.      12      65 ..      12      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 5.6e-24
   MotB_plug  1 rkkkkkeeeeegghgerWlvtYaDlmtLLlaFFvlLfsmssvdekkfqalaeslrea 57
                rk+k+k++   +g++++W+++YaD+mt+++aFF++++++s  + +++ ++ae+++++
  EHU00037.1 12 RKRKHKKH---EGGHGSWKIAYADFMTAMMAFFMVMWLLSIASPQQLIQIAEYFQTP 65
                56666644...467799**************************************97 PP

>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   6.8e-17     3e-13       1      92 [.     160     257 ..     160     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 6.8e-17
                 .B-TTS--B-GGGHHHHHHHHHHHHS-S--EEEEE---S....---HHH.HHHHHHHHHHHHHHHHHHTTSSGGGE.EEEE-TT-------------- CS
        OmpA   1 yFapgsseLtpkaksaldkiaellkkpeqkitveGhtda....agseer.nweLSqkRAeaVanylqnegvppsri.svsgyGaerpitanntaekka 92 
                 +F++gs+e++p  ++ l+ ia +l+   ++i + Ghtd+    +g++ + nweLS++RA+a ++ l+  g++  +i +++g++++  +++ +++++ +
  EHU00037.1 160 MFKTGSAEVEPYMRDILRAIAPILNDIPNRISIAGHTDDiqyaTGDKGYsNWELSADRANASRRELVIGGLDGGKIlRIVGMADTMKLKNRGGDDAVN 257
                 6************************66799*********55555555559**********************9999899*****99999999888765 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   7.9    0.0024        11     205     299 ..     274     379 ..     239     416 .. 0.31

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0024
      DUF572 205 edeedekkakllegkte...................slfasseesaksakkkptkk....................esskekkkeslekklskltkkka 264
                 e+e+ e +a       +                    ++++s+++a++       +                    ++++ ++++              
  EHU00037.1 274 EKENAESDAV------QisdpsalekvtapsapgsnAADKTSSKPATA-------TsadavktansapsaastsaeKAATAASSA-------------- 345
                 1111111111......11122223333333222222111111111111.......011111111111111111111111222222.............. PP

      DUF572 265 dsslvvrKkkkeeekskeskekteeeskeseeesk 299
                  ss+  +K+++++++++++  +++++s++s+++ +
  EHU00037.1 346 -SSTSAVKTAASASSASPAVAAKTATSATSTSSVR 379
                 .3333333333333333333333333322222222 PP

>> CCDC24  Coiled-coil domain-containing protein 24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  13.1     0.011        50      57     138 ..     254     344 ..     240     393 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.011
      CCDC24  57 dlleqeirlLlqsLqekaaaegrdeeqllaq.rsrrvldYvldaaaersareespssrPesassks........taasaasgsssasalss 138
                 d +++ i lL+ +    aa e+++ e+ + q  +++ l+ v++ +a  s+   + ss+P++a s          + a++ s++++a+a+ss
  EHU00037.1 254 DAVNRRISLLVLNHDTEAAIEKENAESDAVQiSDPSALEKVTAPSAPGSNAADKTSSKPATATSADavktansaPSAASTSAEKAATAASS 344
                 78999*************************99**********5555555556666666666666554453332222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1702  (0.09493); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.34s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 2649.82
//
Query:       EHU00038.1  [L=665]
Description: signal transduction histidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-25   89.7   0.5    2.9e-25   88.5   0.5    1.6  1  CheW          CheW-like domain
    2.5e-20   72.5   1.6    1.2e-19   70.4   0.3    2.6  2  Hpt           Hpt domain
    1.6e-19   69.7   0.7    5.5e-19   68.0   0.7    2.0  1  CheY-binding  CheY binding
    8.2e-19   67.8   1.3    3.1e-18   65.9   1.3    2.1  1  H-kinase_dim  Signal transducing histidine kinase, homodimeri
    4.1e-17   62.7   0.1    1.2e-16   61.3   0.1    1.8  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> CheW  CheW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.5     8e-29   2.9e-25       2     133 ..     525     651 ..     524     655 .. 0.94

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 8e-29
                 EEEEEETTEEEEEEGGGEEEEEECCT.BTTTTSSTTEEEEEEETTEEEEEEEHHHHCTSSSSTT.STCEEEEEEEETTEEEEEEESEEEEEEEEECCGE CS
        CheW   2 lllfrlgeetyaiplakvreilevppitpipgapgavlgvinlrGevipvidLrellglgpees.rentrvivvelgnqvvGllVdevkgiqeivikqi 99 
                 ++ +r+++e++++pl++v e l++++ +  p a g    v+++rGe +p++ L  ++ +++ +   ++ +v+++++ +++++llVd+++g++++v+k++
  EHU00038.1 525 GMSVRVANEVFILPLNAVMESLQPRAEELKPLAGGE--CVLEVRGEYLPLVELWNVFDVKEAKTeATQGIVVILQSAGKRYALLVDQLIGQHQVVVKNL 621
                 689*********************995555666666..**************************99********************************* PP

                 ETTTSSTSSTCCCEEEEEECTTSEEEEEE-CCCH CS
        CheW 100 epplglssdlagyisGatklgdgrlvliLDveal 133
                 e++++   +++g is+at+lgdg+++li+Dv al
  EHU00038.1 622 ESNYR---KVPG-ISAATILGDGSVALIVDVSAL 651
                 ***99...999*.*******************98 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.3   3.2e-23   1.2e-19       2      81 ..       8     104 ..       7     108 .. 0.91
   2 ?    0.2   0.1      0.27   9.5e+02      49      84 ..     117     152 ..     112     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 3.2e-23
                 HHHHHHHHHHHHHHHHHHHH........SCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH..HCTSCHHHHHHHH.......HHHHHHHH CS
         Hpt   2 llelfleeaeelleqleqal........dqedlqelaraaHtLKGsagmlGltelaelahelEdlld..ragelelepelle.......alkallea 81 
                 ++++f++ea+ell+++eq+l        d+e+l++++raaH++KG+ag++G+t l+e++h lE++ld  r ge++l+ + ++        +++ l+a
  EHU00038.1   8 FYQTFFDEADELLADMEQHLlgldpqepDSEQLNAIFRAAHSIKGGAGTFGFTVLQETTHILENILDgaRRGEMQLSTDIINlfletkdIMQEQLDA 104
                 679*********************9998888************************************************999888777766666666 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHHHHH CS
         Hpt  49 aelahelEdlldragelelepellealkallealra 84 
                 + ++++l +l  +a+++++e++ + al++ ++++++
  EHU00038.1 117 KYICEALRQLALEAKGQPVEAPVVVALETPVSQAES 152
                 568999999666899999999999999999988876 PP

>> CheY-binding  CheY binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.7   1.5e-22   5.5e-19       3      63 .]     163     222 ..     161     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.5e-22
  CheY-binding   3 eLsgvkekDvelLleELgnLGevseqekagdslevtLettvseDDIvAVlcFvvdpdqiki 63 
                   +L+++kekD++l+leELgnLG++s+ +k+ ++le  + t v +DDI+AVlcFv+d+ qi++
    EHU00038.1 163 QLVDLKEKDIDLMLEELGNLGTLSNVKKGSNTLECHI-TGVGKDDIIAVLCFVIDEAQIRF 222
                   89**********************************8.59*******************87 PP

>> H-kinase_dim  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   1.3   8.7e-22   3.1e-18       1      69 []     272     335 ..     272     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 8.7e-22
  H-kinase_dim   1 sstlRVdakrlDyLlnlvGElVitkarLnqsleefrfenglkasvtelksslqnlgrisgeLQegvmki 69 
                   ss++RV ++++D+L+nlvGElVit+++L q + e+        +  el  s+ +l+r +++LQe+vm+i
    EHU00038.1 272 SSSIRVAVEKVDQLINLVGELVITQSMLAQRSGELD-----PVAHGELLNSMGQLERNARDLQESVMSI 335
                   689*********************************.....99************************97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   3.2e-20   1.2e-16       4     111 ..     383     519 ..     381     520 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 3.2e-20
                 HHHHHHHHHHHHHHHHH......HSTTTEEEEEEEE.EE.TEEEEEEEESSSSSTTHHHT.....................GTCS.TTCHHCSTCHTST CS
   HATPase_c   4 krLrqiisnlvdNavkf......atkageieveika.se.ddlvisveDnGiGipkedlk.....................klfe.kfsqddstkrggg 72 
                 + L+++ +n +d+ ++       a+k  ++ ++++a ++ ++++i+v+D+G G+++e +                      ++f+  fs+ +++ ++ +
  EHU00038.1 383 DPLTHLGRNSLDHGIETpekriaAGKVATGNLTLSAeHQgGNICIEVSDDGAGLNRERILakalssglpvhenmsdeevgmLIFApGFST-AEQVTDVS 480
                 57899999999999997555444333334466766533369****************9999*****************************.999***** PP

                 SSSHHHHHHHH.HHHHTTTEEEEEEETTTEEEEEEEEESS CS
   HATPase_c  73 gtGlGlsivkk.lvelmgGeiwvesepgrGttftftlple 111
                 g+G+G+ +vk+ + e mgG++++ s++g+Gtt+++ lpl+
  EHU00038.1 481 GRGVGMDVVKRnIQE-MGGHVEIASKQGKGTTIRILLPLT 519
                 ***********8888.*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 5299.09
//
Query:       EHU00039.1  [L=165]
Description: purine-binding chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-38  129.7   1.8    6.6e-38  129.5   1.8    1.1  1  CheW             CheW-like domain
  ------ inclusion threshold ------
      0.027   14.4   0.4      0.041   13.8   0.4    1.3  1  Peptidase_M23_N  Peptidase family M23 N-terminal domain


Domain annotation for each model (and alignments):
>> CheW  CheW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   1.8   7.3e-42   6.6e-38       1     137 [.      18     154 ..      18     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 7.3e-42
                 EEEEEEETTEEEEEEGGGEEEEEECCT.BTTTTSSTTEEEEEEETTEEEEEEEHHHHCTSSSSTTSTCEEEEEEEETTEEEEEEESEEEEEEEEECCGE CS
        CheW   1 qlllfrlgeetyaiplakvreilevppitpipgapgavlgvinlrGevipvidLrellglgpeesrentrvivvelgnqvvGllVdevkgiqeivikqi 99 
                 ++l+f+lg+e+y+i++ kv+ei  ++++t+i ++p++++gv nlrG ++p+idLr  +  +  e +ent+viv++l+n+vvG++Vd v++++++ ++qi
  EHU00039.1  18 EFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPDFIRGVTNLRGVIVPIIDLRVKFSQPDVEYNENTVVIVLNLENRVVGIVVDGVSDVLSLTQEQI 116
                 69************************************************************************************************* PP

                 ETT..TSSTSSTCCCEEEEEECTTSEEEEEE-CCCHHHHH CS
        CheW 100 epp..lglssdlagyisGatklgdgrlvliLDveallrsl 137
                 +p   ++++    +y++G   l  +r+++++D+e+ll+s+
  EHU00039.1 117 RPSpeFAVTMS-TEYLTGLGAL-GERMLILVDIEKLLSSE 154
                 ***99887777.999*******.99************986 PP

>> Peptidase_M23_N  Peptidase family M23 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   4.6e-06     0.041       8      47 ..      66     102 ..      63     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-06
                      EEEEE-S--SS--EEEETTEEEEEEESTTSSEEEEEE--T CS
  Peptidase_M23_N   8 vaviplgakaqaPevtyqgkrvlvvkeeknqwlaiVGipL 47 
                      v +i+l  k ++P v y+++ v++v + +n+   +VGi  
       EHU00039.1  66 VPIIDLRVKFSQPDVEYNENTVVIVLNLENR---VVGIVV 102
                      569********************99999955...555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1223.67
//
Query:       EHU00040.1  [L=520]
Description: methyl-accepting chemotaxis protein I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-60  204.2  31.0    9.5e-60  201.3  16.6    2.9  3  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    7.4e-31  107.4  11.7    7.4e-31  107.4  11.7    3.8  5  TarH           Tar ligand binding domain homologue
    1.2e-08   35.2   6.6    1.6e-08   34.7   0.2    4.2  4  HAMP           HAMP domain
  ------ inclusion threshold ------
       0.34   10.9   3.1        0.3   11.0   0.3    2.1  2  Trep_Strep     Hypothetical bacterial integral membrane prote
       0.92    9.8  17.1         12    6.2   2.5    4.9  4  DUF948         Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.3   2.1e-05     0.075     111     170 ..     255     314 ..     233     316 .. 0.79
   2 !  201.3  16.6   2.6e-63   9.5e-60       1     172 []     327     484 ..     327     484 .. 0.98
   3 ?   -3.3   0.3       1.8   6.6e+03      20      38 ..     493     511 ..     485     516 .. 0.40

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 111 etrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                   r+  ++ +++v e ++    i + ++e+a+  ++++a +eeq+as+e+++ ++e++++
  EHU00040.1 255 GIREMQQSLVTTVGEVRSGCDAIFTGASEIAAGNNDLSARTEEQAASLEQTAASMEQLTA 314
                 33444445567788888888999********************************99875 PP

  == domain 2  score: 201.3 bits;  conditional E-value: 2.6e-63
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal   1 sdlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 s+la++ase+A +ggk+v+ vv++m+ei++ss++i+dii+Vid+ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsaqaakei+ li    
  EHU00040.1 327 SQLAHTASETALQGGKVVDGVVSTMKEIADSSRKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAQAAKEIKGLI---- 421
                 5789*******************************************************************************************.... PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                           e+++ rv++gs++ve++g+++++iv av++v+d++ eia+as+eqs++i++v qav+e++ vt
  EHU00040.1 422 ----------EDSVARVDSGSQQVESAGSTMNNIVGAVTRVTDIMGEIASASDEQSRGIDQVGQAVTEMDPVT 484
                 ..........99*********************************************************9875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHH CS
   MCPsignal  20 nvvkqmeeieksskeisdi 38 
                 +  ++  ++e++++ +s+ 
  EHU00040.1 493 ESAAAAAALEQQASSLSQA 511
                 3333333333333333333 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4  11.7   2.1e-34   7.4e-31       1     173 [.       1     176 [.       1     179 [. 0.96
   2 ?   -3.9   2.4       3.2   1.1e+04       9      35 ..     190     216 ..     189     217 .. 0.80
   3 ?   -1.8   2.2      0.68   2.5e+03      69      93 ..     303     326 ..     279     338 .. 0.53
   4 ?   -0.6   0.1      0.31   1.1e+03     131     168 ..     379     416 ..     372     421 .. 0.82
   5 ?   -2.4   0.4       1.1   3.8e+03      42      56 ..     490     503 ..     458     513 .. 0.53

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 2.1e-34
                 XXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS.....SHHHHHHHHHH CS
        TarH   1 mlkrisIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaeda.....kellaraeesl 94 
                 mlkri+++t+L++vl+l+g+L+l+sg l++s+l++++ a+   + +   + aa+++a ++l q+R+tLnra+ ++  + a ++      +l ++a +  
  EHU00040.1   1 MLKRIKVVTSLITVLMLFGALQLLSGSLFWSALNNDKAAFALSQIST-RNVAAMTDAYMALNQSRTTLNRAMLRLQTSLASQMnggqlDSLTDKAISEA 98 
                 9***************************************9996555.**********************9999988888888999************* PP

                 HHHHHHHHHHHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH....H CS
        TarH  95 aqseeawkaYlalprtaeeeealaaelkakykalqdglapliaaleagnleaffdlptqkiqplfealyaayeaLrklq 173
                 ++ e++ +++ a+p+t++ + +  ++l+++++a+  gl+ +ia l+a +le +f+++ ++ q++++a y+a++ L++ +
  EHU00040.1  99 NKGEQYLAEFNAIPETPGADTEMRDQLQNHFAAYLTGLRGMIASLKAKDLEGMFKQNIEQKQQAMQATYTAWR-LKQSE 176
                 *********************************99*************************************9.67665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
                 XXXXXXXXXXXXXXXXXXSSSSSSHHH CS
        TarH   9 trLllvlallgvLllvsgglglsglsr 35 
                 t+ + +l+++g+L +v+ +  ++gl++
  EHU00040.1 190 TQMIWLLGMVGALVVVVIIGCWFGLRQ 216
                 567788999999999998888777775 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.68
                 HHHHHHHTTTSSSSSSHHHHHHHHH CS
        TarH  69 nragiaaladeaedakellaraees 93 
                  +  +a++++ ++++k++ ++a++ 
  EHU00040.1 303 EQ-TAASMEQLTATVKQNADNARQA 326
                 22.2333333333333333333333 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayea 168
                 +l ++++a +ag++ + f++++ ++++l +   +a+++
  EHU00040.1 379 ALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAQAAKE 416
                 78899999999999999999999999998888777766 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.1
                 HHHHHH.HHHHHHHH CS
        TarH  42 evytnrlqqqaaLae 56 
                  v+++  +++aaL +
  EHU00040.1 490 LVEESA-AAAAALEQ 503
                 222222.22222222 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   4.6e-12   1.6e-08       6      52 ..     218     264 ..     214     265 .. 0.93
   2 ?    0.7   0.1      0.19   6.9e+02      17      29 ..     281     300 ..     279     325 .. 0.60
   3 ?   -3.2   0.0       3.3   1.2e+04      10      21 ..     351     362 ..     347     363 .. 0.56
   4 ?   -1.0   0.0      0.65   2.3e+03       4      23 ..     443     462 ..     441     480 .. 0.54

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 4.6e-12
                 THHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   6 ilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 ++ PL+rL   +r ia+Gdl++++ v+gr+E+ +La+ +++M+++L+
  EHU00040.1 218 LIYPLQRLLVDIRTIASGDLTQPVKVEGRNEMSQLAAGIREMQQSLV 264
                 56799999999**********************************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
                 HHHHTTT..BTSST.....C CS
        HAMP  17 arriaaG..dldtr.....l 29 
                 a +iaaG  dl++r      
  EHU00040.1 281 ASEIAAGnnDLSARteeqaA 300
                 78899888888888444441 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHT CS
        HAMP  10 LrrLaraarria 21 
                 ++++a++ r+ia
  EHU00040.1 351 MKEIADSSRKIA 362
                 455666666666 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.65
                 HTTHHHHHHHHHHHHHHTTT CS
        HAMP   4 rrilrPLrrLaraarriaaG 23 
                 ++i+  + r+++ + +ia+ 
  EHU00040.1 443 NNIVGAVTRVTDIMGEIASA 462
                 56667777777777777753 PP

>> Trep_Strep  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.29     1e+03      50      81 ..       1      32 [.       1      60 [. 0.83
   2 ?   11.0   0.3   8.4e-05       0.3     141     177 ..     178     215 ..     161     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
  Trep_Strep 50 lvakvpkfgailimglllgllllltGhgwlvl 81
                ++++++    ++ + +l+g l ll+G  ++++
  EHU00040.1  1 MLKRIKVVTSLITVLMLFGALQLLSGSLFWSA 32
                67788888888888899999999999866654 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.4e-05
  Trep_Strep 141 saeyidt.lvalitpwmlvvlliltivgallGgliGkk 177
                 s+  +++  +a++++ +l++++ + +v+ ++G+++G +
  EHU00040.1 178 SSHGAEQnQQAFTQMIWLLGMVGALVVVVIIGCWFGLR 215
                 444444404566699********************965 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.5    0.0034        12      25      86 ..     257     318 ..     200     320 .. 0.82
   2 ?    5.7   2.8    0.0049        17      27      87 ..     301     361 ..     289     366 .. 0.80
   3 ?    1.5   0.4     0.099   3.6e+02      23      58 ..     328     363 ..     316     392 .. 0.64
   4 ?    4.7   2.3    0.0098        35      39      71 ..     446     481 ..     394     516 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0034
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 +++ +++ +t+ e+++  d+i + + ++ a  n+l +  +e+ +++++  +++++l+++v++
  EHU00040.1 257 REMQQSLVTTVGEVRSGCDAIFTGASEIAAGNNDLSARTEEQAASLEQTAASMEQLTATVKQ 318
                 55566677788888899999999999999999999999999999999999999999999875 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0049
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                  l+++aa++e+l+  v++  ++++++ + + +  e   +  + vd +++ ++++++s +++
  EHU00040.1 301 SLEQTAASMEQLTATVKQNADNARQASQLAHTASETALQGGKVVDGVVSTMKEIADSSRKI 361
                 5778888999999888888888888888888888888888888899999888888876655 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.099
      DUF948  23 klkktldeaaatieelekqvdpilkevedllakvne 58 
                 +l++t++e+a +  ++ + v +++ke++d  +k+ +
  EHU00040.1 328 QLAHTASETALQGGKVVDGVVSTMKEIADSSRKIAD 363
                 445555555555555555555555555555555444 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0098
      DUF948  39 e...kqvdpilkevedllakvnelledvneklekvd 71 
                      +v+ i+ e++ + ++  +  ++v + + ++d
  EHU00040.1 446 VgavTRVTDIMGEIASASDEQSRGIDQVGQAVTEMD 481
                 222233333333333333333334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1987  (0.110826); expected 358.6 (0.02)
Passed bias filter:                      773  (0.0431145); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 3690.00
//
Query:       EHU00041.1  [L=558]
Description: methyl-accepting chemotaxis protein I, serine sensor receptor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-59  198.1  33.5    3.4e-58  196.3  16.7    2.8  3  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
    2.2e-42  145.0   0.6    2.2e-42  145.0   0.6    4.1  4  TarH       Tar ligand binding domain homologue
    1.3e-09   38.3   0.8    1.3e-09   38.3   0.8    3.1  4  HAMP       HAMP domain
  ------ inclusion threshold ------
       0.02   14.9   1.0       0.02   14.9   1.0    3.0  3  YscO       Type III secretion protein YscO
      0.059   13.6   0.0       0.16   12.2   0.0    1.7  1  Tox-URI2   URI fold toxin 2
       0.11   12.2   0.2        0.2   11.4   0.2    1.4  1  DUF1673    Protein of unknown function (DUF1673)
       0.12   12.3   0.1       0.52   10.3   0.0    2.1  2  SAM_LFY    Floricaula / Leafy protein SAM domain
       0.78    7.6   5.7       0.17    9.8   1.1    2.1  3  Prominin   Prominin
        2.3    8.3  12.3          2    8.4   1.4    3.5  4  DUF1664    Protein of unknown function (DUF1664)
          8    6.9   7.6          1    9.7   0.5    3.0  3  DUF4854    Domain of unknown function (DUF4854)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.9   2.8e-05     0.051      95     170 ..     242     314 ..     230     316 .. 0.87
   2 !  196.3  16.7   1.9e-61   3.4e-58       2     172 .]     328     484 ..     327     484 .. 0.98
   3 ?   -2.2   0.7       1.7   3.1e+03      19      43 ..     492     516 ..     485     533 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
                 H..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  95 iieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                  i + +ei d ++sl+e +++   ++++v++ ++a   i + ++e+a   +++++ +e+q+as+e+++ ++e++++
  EHU00041.1 242 AITVRNEIGDLLTSLQEMQRELVRTVSTVRDGADA---IYTGASEIAVGNNDLSSRTEQQAASLEQTAASMEQLTA 314
                 457899999*************9999999998876...667888999999*********************99875 PP

  == domain 2  score: 196.3 bits;  conditional E-value: 1.9e-61
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                  la +ase+A++ggk+v+ vv++m+ei+ ss++i+di++Vid+ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsaqaakei+ li     
  EHU00041.1 328 TLALNASETAQQGGKVVDGVVTTMKEIAGSSRKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLI----- 421
                 57889*****************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          e++++rv++gs lve++g++++eiv+av++v+d++ eia+as+eqs++i++v  av+e+++vt
  EHU00041.1 422 ---------EDSVSRVNTGSVLVESAGDTMNEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVTEMDRVT 484
                 .........9***********************************************************986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  19 anvvkqmeeieksskeisdiieVid 43 
                 ++  ++  ++e++++++++ ++V +
  EHU00041.1 492 EESAAAAAALEDQASNLKQAVSVFN 516
                 4444444444444444444444433 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.6   1.2e-45   2.2e-42       1     168 [.       1     172 [.       1     179 [. 0.97
   2 ?   -7.0   8.8        10   1.8e+04      79      79 ..     270     270 ..     192     330 .. 0.46
   3 ?   -0.2   0.2      0.45   8.1e+02     131     168 ..     379     416 ..     372     421 .. 0.84
   4 ?   -1.1   0.2      0.86   1.5e+03      32      64 ..     479     511 ..     448     525 .. 0.68

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 1.2e-45
                 XXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS.....SHHHHHHHHHH CS
        TarH   1 mlkrisIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaeda.....kellaraeesl 94 
                 m++r +++t+Ll+vl+l+++L++ sgg+++ +++++++++   ++ + + q+a++ ++v+l+qaR+tLnragi++l+d +        kel+a a++ l
  EHU00041.1   1 MFSRVRVVTGLLCVLGLFALLQVFSGGVFFKTVTEDKENFAYNQRLS-TLQRAMGTSWVALVQARNTLNRAGIRYLQDGQMAGsgatvKELVALADSEL 98 
                 9**********************************************.9999************************9988877799************* PP

                 HHHHHHHHHHHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH  95 aqseeawkaYlalprtaeeeealaaelkakykalqdglapliaaleagnleaffdlptqkiqplfealyaayea 168
                 +q+e+ ++ + a   ++++ +a    l+a+yk+++dgla+li +l++gn++ f d+ptq +q++f+++y+ +++
  EHU00041.1  99 KQAEKGYELFNANLSEKGKSAANVLTLQANYKQFHDGLAELIVFLRNGNFKGFVDQPTQSYQDKFQKDYDDWLN 172
                 ***********9999999*****************************************************987 PP

  == domain 2  score: -7.0 bits;  conditional E-value: 10
                 S CS
        TarH  79 e 79 
                  
  EHU00041.1 270 V 270
                 1 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.45
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayea 168
                 +l ++++a +ag++ + f++++ ++++l +   +a+++
  EHU00041.1 379 ALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKE 416
                 78999999999999999999999999999888887776 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.86
                 SHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHH CS
        TarH  32 glsrsndalrevytnrlqqqaaLaearvsllqa 64 
                  + r  ++   + +++ +++aaL +  ++l qa
  EHU00041.1 479 EMDRVTQQNASLVEESAAAAAALEDQASNLKQA 511
                 444433333333333336666666666555554 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.8   7.3e-13   1.3e-09       2      52 ..     214     264 ..     213     265 .. 0.94
   2 ?   -1.1   0.1       1.4   2.6e+03      19      28 ..     283     294 ..     275     325 .. 0.53
   3 ?   -3.8   0.0        10   1.8e+04      10      24 ..     351     363 ..     347     369 .. 0.57
   4 ?   -2.8   0.0       4.9   8.8e+03       6      22 ..     445     461 ..     442     475 .. 0.63

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 7.3e-13
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +   ++rPL++  +++++ia+Gdl++++ ++ r+EiG+L  ++ +M+++L+
  EHU00041.1 214 MRSLLIRPLKQSIDHIQHIARGDLTQPIAITVRNEIGDLLTSLQEMQRELV 264
                 56789********************************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
                 HHTTT..BTSST CS
        HAMP  19 riaaG..dldtr 28 
                 +ia G  dl++r
  EHU00041.1 283 EIAVGnnDLSSR 294
                 555444466665 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 10
                 HHHHHHHHHHHTTTB CS
        HAMP  10 LrrLaraarriaaGd 24 
                 ++++a + r+ia  d
  EHU00041.1 351 MKEIAGSSRKIA--D 363
                 345555556666..4 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 4.9
                 THHHHHHHHHHHHHHTT CS
        HAMP   6 ilrPLrrLaraarriaa 22 
                 i+  + r+++ + +ia+
  EHU00041.1 445 IVSAVTRVTDIMGEIAS 461
                 45555666666666664 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.0   1.1e-05      0.02      32     115 ..     255     339 ..     242     350 .. 0.87
   2 ?   -2.7   0.3       2.9   5.2e+03      11      39 ..     388     416 ..     382     421 .. 0.52
   3 ?    2.8   0.4     0.056     1e+02      64      99 ..     476     511 ..     444     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  32 aheqaresladyrawraqeearlyaeiigklvllkele.kvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearr 115
                  +++ +++l +   + ++  +++y  + + +v  ++l  +  qq a+L++  a+ e+  + +kq++e++r+a++ a ++ + a++
  EHU00041.1 255 SLQEMQRELVRTVSTVRDGADAIYTGASEIAVGNNDLSsRTEQQAASLEQTAASMEQLTATVKQNAENARQASTLALNASETAQQ 339
                 577888888888888899999999999999999999972456*********************************9999888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  11 reeraekalkrqeqalaeareaheqares 39 
                 r+ ++ + +      +++++++  qa+++
  EHU00041.1 388 RAGEQGRGFAVVAGEVRNLAQRSAQAAKE 416
                 55555555555555555555555555544 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.056
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  64 llkelekvkqqvalLrekeaelekqveeakqqleae 99 
                 ++ e+++v qq a+L e++a  + ++e+ + +l+++
  EHU00041.1 476 AVTEMDRVTQQNASLVEESAAAAAALEDQASNLKQA 511
                 567888899999999888888888888888777776 PP

>> Tox-URI2  URI fold toxin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.1e-05      0.16      25      76 ..     280     326 ..     272     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
    Tox-URI2  25 GiskerIkesglskrlrrqlrklekangklkyitrivkgimtrkeakelede 76 
                 G s+  +++++ls r+ +q+  le+ ++ ++  t  v     +++a+++ ++
  EHU00041.1 280 GASEIAVGNNDLSSRTEQQAASLEQTAASMEQLTATV-----KQNAENARQA 326
                 77887889*****************************.....8888877665 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00011       0.2      72     142 ..     175     252 ..     164     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
     DUF1673  72 lvltqlGi........nlialliglllsllliiltwkkqmqiyddikralvektvdkisikrilfkpvvIiikievten 142
                 lvl q+Gi         +i+l++g+l+  ll+i+ + ++m ++  i++       ++ + +  l +p+ I ++ e+ + 
  EHU00041.1 175 LVLSQKGIdannaayqRMIMLVAGTLVVTLLVIVLVWNLMRSLL-IRPLKQSIDHIQHIARGDLTQPIAITVRNEIGDL 252
                 789999*9999999999*********6655555555579****9.9999999999999999999999999777777655 PP

>> SAM_LFY  Floricaula / Leafy protein SAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00029      0.52      11      43 ..      68     100 ..      61     112 .. 0.89
   2 ?   -3.4   0.0       5.3   9.5e+03      39      52 ..     247     260 ..     244     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
     SAM_LFY  11 eayGvryltvakiaelGftvstlvnmkeeeldd 43 
                 +  G+ryl   ++a  G tv+ lv + + el +
  EHU00041.1  68 NRAGIRYLQDGQMAGSGATVKELVALADSELKQ 100
                 567***************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.3
     SAM_LFY  39 eelddmmkslseif 52 
                 +e+ d+++sl+e+ 
  EHU00041.1 247 NEIGDLLTSLQEMQ 260
                 68999999999875 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.72   1.3e+03     228     708 ..     243     263 ..     218     273 .. 0.36
   2 ?    9.8   1.1   9.4e-05      0.17     622     733 ..     298     416 ..     282     430 .. 0.82
   3 ?   -1.5   0.1      0.24   4.3e+02     338     400 ..     434     494 ..     411     517 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.72
    Prominin 228 dtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcldqlpnvdevlea 326
                  t++++                                                                                             
  EHU00041.1 243 ITVRNE--------------------------------------------------------------------------------------------- 248
                 222222............................................................................................. PP

    Prominin 327 leevletnlssivkeglarlneipekvknqtaevvpdlkkalakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwliglivcsl 425
                                                                                                                    
  EHU00041.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

    Prominin 426 lllivvililgLlcGilGlsrtatptdrgcskntGasfLlvgvglsFlffsllmlvvlltFlvGlnvyklvCeplesneLfrvlDtpgllpeldLsrll 524
                                                                                                                    
  EHU00041.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

    Prominin 525 skklkknltisevikaCkanesifkvLrlnnlydieellnikklteeiqkelenlkvdlsnlelLteeerkdLeklresglskihsslyleqlckkltk 623
                                                                                                                    
  EHU00041.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

    Prominin 624 vnletlaekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraenfl 708
                                                                                       i +ll+++++ + +l
  EHU00041.1 249 ----------------------------------------------------------------------IGDLLTSLQEMQREL 263
                 ......................................................................222222222222222 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 9.4e-05
    Prominin 622 tkvnletlaekleelanelsngkknlkqs..lkneaqdlraiqqelvlplessvkklkksvkklde.....ensdlqesikkllaaveraenflkkngs 713
                    +le++a+++e+l  +++++ +n++q+  l  +a+++ +   + v+ + +++k++  s +k+ +     ++  +q++i  l aave+a    + +g 
  EHU00041.1 298 QAASLEQTAASMEQLTATVKQNAENARQAstLALNASETAQQGGKVVDGVVTTMKEIAGSSRKIADitsviDGIAFQTNILALNAAVEAARAGEQGRGF 396
                 367899************999988888771144556666666668999****************99888888889************************ PP

    Prominin 714 eiinneskklldrileqfee 733
                  +++ e ++l++r  +  +e
  EHU00041.1 397 AVVAGEVRNLAQRSAQAAKE 416
                 **********9998877666 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.24
    Prominin 338 ivkeglarlneipekvknqtaevvpdlkkalakgreqikklakkiprealdavisdle.nters 400
                 +v+++ +++nei + v++ +++++ ++ +a ++++  i+++  ++ +e +d+v+++    +e+s
  EHU00041.1 434 LVESAGDTMNEIVSAVTR-VTDIMGEIASASDEQSRGIDQVGLAV-TE-MDRVTQQNAsLVEES 494
                 566667777777777754.55677777777777777777777766.33.333333333133333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.1     0.018        32      45     118 ..     244     317 ..     224     322 .. 0.81
   2 ?    3.0   1.2     0.055        98      39      98 ..     263     325 ..     259     357 .. 0.74
   3 ?    0.3   0.1      0.39     7e+02      73     112 ..     409     448 ..     401     456 .. 0.75
   4 ?    8.4   1.4    0.0011         2      39     113 ..     442     515 ..     437     523 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.018
     DUF1664  45 svskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                 +v +++ ++ +sl++ +r+L + + +v +  d+    ++ei+   +++++ +++    +e+  + +e+l ++++
  EHU00041.1 244 TVRNEIGDLLTSLQEMQRELVRTVSTVRDGADAIYTGASEIAVGNNDLSSRTEQQAASLEQTAASMEQLTATVK 317
                 57788888889999999999999999999999998888888888888888888888888888877777777665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.055
     DUF1664  39 lsdavesvskqleqvs...eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                 l   v++v    + ++   +++a   ++Lssr ++  ++l+++++  +++++ v++  e+ ++
  EHU00041.1 263 LVRTVSTVRDGADAIYtgaSEIAVGNNDLSSRTEQQAASLEQTAASMEQLTATVKQNAENARQ 325
                 555566666555555544467888888999999999999999988888888888877776655 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.39
     DUF1664  73 kkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 ++ ++ kei+  i++ v++v+ +   +++  ++++e+v+ 
  EHU00041.1 409 RSAQAAKEIKGLIEDSVSRVNTGSVLVESAGDTMNEIVSA 448
                 4567889999999999999999877777777777777665 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0011
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegl 113
                 +++ v+ v+ ++++++ ++a++ ++ s+ id+v+  + e+ +++++ ++ v+e     ++++++ +++k+av+ +
  EHU00041.1 442 MNEIVSAVT-RVTDIMGEIASASDEQSRGIDQVGLAVTEMDRVTQQNASLVEESAAAAAALEDQASNLKQAVSVF 515
                 555566665.46778899*****************************************************9865 PP

>> DUF4854  Domain of unknown function (DUF4854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.6   4.7e+03      34      46 ..     168     180 ..     142     196 .. 0.50
   2 ?    9.7   0.5   0.00057         1      33      90 ..     272     329 ..     249     342 .. 0.79
   3 ?   -0.7   0.3         1   1.8e+03      59      83 ..     490     514 ..     475     530 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.6
     DUF4854  34 gntLvyeytlsks 46 
                 ++ L y++ ls++
  EHU00041.1 168 DDWLNYNLVLSQK 180
                 4555555555555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00057
     DUF4854  33 egntLvyeytlskslddaaldalkealaesldsqastfeslakqlkkevkvenpivvv 90 
                 +g   +y+   + ++ +++l++ +e+ a+sl+++a + e+l +++k++ ++   + ++
  EHU00041.1 272 DGADAIYTGASEIAVGNNDLSSRTEQQAASLEQTAASMEQLTATVKQNAENARQASTL 329
                 566666666666668999*****************************99986665555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1
     DUF4854  59 laesldsqastfeslakqlkkevkv 83 
                 l e++ + a ++e  a++lk++v+v
  EHU00041.1 490 LVEESAAAAAALEDQASNLKQAVSV 514
                 2233333344444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1576  (0.0879023); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 4002.23
//
Query:       EHU00042.1  [L=290]
Description: chemotaxis regulator, protein-glutamate methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-58  197.3   0.0    2.6e-58  196.7   0.0    1.2  1  CheR             CheR methyltransferase, SAM binding domain
    7.8e-18   63.9   1.4    1.4e-17   63.1   1.4    1.4  1  CheR_N           CheR methyltransferase, all-alpha domain
    1.1e-06   29.3   0.0    2.2e-05   25.1   0.0    2.3  2  Methyltransf_12  Methyltransferase domain
    1.4e-06   28.9   0.0    0.00013   22.6   0.0    2.9  3  Methyltransf_25  Methyltransferase domain
     0.0005   20.7   0.0     0.0017   19.0   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
     0.0084   15.9   0.0      0.059   13.2   0.0    2.2  3  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.045   13.6   0.0      0.068   13.0   0.0    1.4  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.0     1e-61   2.6e-58       1     190 [.      95     280 ..      95     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 1e-61
                 SS--TTTTCHHHHHHHHCCH.HHHHHHHTSSSEEEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHHHTEEECCHHTTS-HHHHH CS
        CheR   1 neTeffreakhfeelekevlepllakaknekrvriwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAkagvykeeeleglseelle 99 
                 n T ffrea+hf  l++++        k++ ++++ws ++s+GeEpYs+A++l+etl +  + k++++A+Did++vlekA agvy++eel++ls+++l+
  EHU00042.1  95 NLTAFFREAHHFPILAEHAR-------KRQGNFSVWSTAASTGEEPYSIAITLAETLGTGPG-KFQVHASDIDTQVLEKAVAGVYRQEELRTLSPAQLQ 185
                 78****************99.......56799***********************9999999.************************************ PP

                 HHEEEEETTCEE...E-HHHHTTEEEEE--TTT.-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE-TTB--SSSCCCCCEEE CS
        CheR 100 ryfekseddsyk...vkkeikelvkFeklnlle.kksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLllGhsEslkklkdkfevvk 190
                 r+f + ++++     v++e+ ++v+F +lnll+ +++++g++D ifcrnv+iYfd+etqek+l+rf   lkpgg+L+ GhsE++++  ++f   +
  EHU00042.1 186 RFFLRGTGPHAGmvrVRPELANMVNFSQLNLLAnDWNLPGPFDAIFCRNVMIYFDKETQEKILRRFVPLLKPGGILFAGHSENFSQISKEFWLRG 280
                 *****9998877777******************9***************************************************9998886655 PP

>> CheR_N  CheR methyltransferase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   1.4   5.4e-21   1.4e-17       2      53 .]      29      80 ..      28      80 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 5.4e-21
                HHHHHHHHHHHTT-EE--SSTHHHHHTHHHHHHHTTT-SSSHHHHHHTSHSS CS
      CheR_N  2 dferlleliyertGidlsdyKrallkrRlsrRmralglksfeeYldlLrsdp 53
                +f+r+ +liy+r+Gi l+d+Kr ++++Rl rR+r l++++f+ Yl+lL++dp
  EHU00042.1 29 HFRRISQLIYQRAGIVLADHKREMVYNRLVRRLRTLNIDDFGRYLALLENDP 80
                69************************************************98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.17   4.4e+02      19      36 ..     149     166 ..     135     187 .. 0.74
   2 !   25.1   0.0   8.6e-09   2.2e-05      46      99 .]     204     261 ..     196     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
  Methyltransf_12  19 pdieytgvDispsaieda 36 
                         +++++Di+++++e+a
       EHU00042.1 149 GKFQVHASDIDTQVLEKA 166
                      567999*********665 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 8.6e-09
  Methyltransf_12  46 nnnnnvelealdlldldgg..ssfDlvvasnvlhhl..kdirevldnirklLkpgGrl 99 
                      + +n v++ +l+ll  d +  + fD++++ nv+ ++  ++ +++l+++  lLkpgG+l
       EHU00042.1 204 ELANMVNFSQLNLLANDWNlpGPFDAIFCRNVMIYFdkETQEKILRRFVPLLKPGGIL 261
                      557889999999999999999****************77777**************87 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2   3.2e+03      51      93 ..      16      61 ..       4      63 .. 0.56
   2 ?    2.7   0.0     0.083   2.1e+02      14      39 ..     139     168 ..     130     188 .. 0.76
   3 !   22.6   0.0   5.1e-08   0.00013      48      97 .]     209     259 ..     189     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
                     EESBCCGBSSSTTTEEEEEE.EST.GGG.SSHHHHHHHHHHHHHHE CS
  Methyltransf_25 51 vqgdaedlpfedgsfDlvvs.sga.lhh.lsdedlekalkeiarvL 93
                     + + +++lp+ d +f  +   +++   + l d+++e +++++ r L
       EHU00042.1 16 LSQMVQRLPLSDTHFRRISQlIYQrAGIvLADHKREMVYNRLVRRL 61
                     5556677888888877665421111222245555566666666655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.083
                      HHHCTS....TSSEEEEEESSHHHHHHHHH CS
  Methyltransf_25  14 alakrl....gkakvtgvDiseemleaare 39 
                       la+ l    gk +v++ Di+ + le+a +
       EHU00042.1 139 TLAETLgtgpGKFQVHASDIDTQVLEKAVA 168
                      55666544334999**********999865 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 5.1e-08
                      EEEEESBC..CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  48 vefvqgda..edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      v+f q ++  +d++++ g fD++++++++ ++++e +ek+l+++  +LkpgG
       EHU00042.1 209 VNFSQLNLlaNDWNLP-GPFDAIFCRNVMIYFDKETQEKILRRFVPLLKPGG 259
                      4555555532666665.6*******999***********************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         7   1.8e+04      48      62 ..      16      30 ..       8      30 .. 0.68
   2 !   19.0   0.0   6.5e-07    0.0017      60      95 ..     225     262 ..     139     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7
                     TTEECCCTSS-TT-E CS
  Methyltransf_11 48 vvadaeklpfednsf 62
                     + + +++lp+ d  f
       EHU00042.1 16 LSQMVQRLPLSDTHF 30
                     555677899988776 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.5e-07
                      T-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  60 nsfDlvvssevlhhv..edpekalkeiaRvLkpgGllv 95 
                      + fD++++++v+ ++  e +ek+l+ ++ +LkpgG+l+
       EHU00042.1 225 GPFDAIFCRNVMIYFdkETQEKILRRFVPLLKPGGILF 262
                      47*************9999*****************97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   3.6e+03      88     116 ..      24      52 ..      14      94 .. 0.63
   2 ?   -0.8   0.0      0.45   1.2e+03      18      44 ..     137     166 ..     135     176 .. 0.71
   3 !   13.2   0.0   2.3e-05     0.059      57     113 ..     210     267 ..     202     288 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
  Methyltransf_31  88 adpdkileeiervlkpggilliedprlla 116
                      + +d  +++i++++ +   ++++d++ + 
       EHU00042.1  24 PLSDTHFRRISQLIYQRAGIVLADHKREM 52 
                      55555666666666666666666666222 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.45
  Methyltransf_31  18 tfelaeelgp...kaevvGiDiseeaielA 44 
                      ++ lae+lg+   k +v+  Di+ +++e+A
       EHU00042.1 137 AITLAETLGTgpgKFQVHASDIDTQVLEKA 166
                      556777555554566788888888888887 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.3e-05
  Methyltransf_31  57 eFeqgdieeleklled.ekfDlilsnevl..naladpdkileeiervlkpggilliedpr 113
                      +F+q +  + +  ++   +fD i++++v+   +   ++kil++   +lkpggil + +  
       EHU00042.1 210 NFSQLNLLAND--WNLpGPFDAIFCRNVMiyFDKETQEKILRRFVPLLKPGGILFAGHSE 267
                      45555555544..333489**********77777889*****************988777 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.7e-05     0.068      61     116 ..     167     262 ..     101     275 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
  Methyltransf_23  61 e..................................kakkaqkdqfdeq.....eaaepqgkfdlIvlrevlehvpd..ppellrqiatllkpgG 113
                                                          +  a+ ++f +q     ++++  g fd I +r+v+  ++    ++ lr++  llkpgG
       EHU00042.1 167 VagvyrqeelrtlspaqlqrfflrgtgphagmvrvRPELANMVNF-SQlnllaNDWNLPGPFDAIFCRNVMIYFDKetQEKILRRFVPLLKPGG 259
                      244444443333333333333333333333333331222222222.11222224566677***************5569*************** PP

  Methyltransf_23 114 yll 116
                       l+
       EHU00042.1 260 ILF 262
                      997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2215.47
//
Query:       EHU00043.1  [L=349]
Description: chemotaxis response regulator/protein-glutamate methylesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-62  207.7   0.1    1.7e-61  206.8   0.1    1.4  1  CheB_methylest  CheB methylesterase
      3e-24   85.3   0.2      8e-24   84.0   0.2    1.7  1  Response_reg    Response regulator receiver domain


Domain annotation for each model (and alignments):
>> CheB_methylest  CheB methylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.1   1.9e-65   1.7e-61       1     169 [.     159     336 ..     159     337 .. 0.95

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 1.9e-65
                     EEEEE-TTHHHHHTTTGGGS-TT-SS-EEEEE---TT-HHHHHHHHHHH-SSEEEE--TT-B--TTEEEE--TTSEEEEE.............EE CS
  CheB_methylest   1 vvigaStGGlealkellaalpedfpaavvvvqhmppsftsslaelLnresslkVkeaedgeelepgrvyvapgdkhllie.......lals..ak 86 
                     ++ig+StGG+ea++++l+ lp+ ++ a++++qhmpp+ft+s+ae+Ln+ ++++Vkeaedge++ pg++y+apg +h+++        ++l+  ++
      EHU00043.1 159 IAIGSSTGGTEAIRHVLQPLPA-TSPALLITQHMPPGFTRSFAERLNKLCQITVKEAEDGERILPGHAYIAPGAMHMELGrsganyvVKLNdgPP 252
                     79********************.7889****************************************************9999888766665446 PP

                     .-.-SS-HHHHHHHHHHHH.GGEEEEE-SBSS-TTHHHHHHHHHTT-EEEEE-GGG-SSBSHHHHHHHTT--SEEE-GGGHHHH CS
  CheB_methylest  87 .kgerpsiDvlfesaaeaygeraigviLtGmgsDGaeGlkaikeaggltiaqdpesavvpgmPkaaieagavdevlpleeiaee 169
                      ++++ps+Dvlf+s+a + g +a+gviLtGmg+DGa+G+ ++++ag++tiaq+++s+vv+gmP++ai++g v+ev+ l++i ++
      EHU00043.1 253 vNRHKPSVDVLFKSVAINAGRNAVGVILTGMGNDGAAGMLEMHRAGAWTIAQNEASCVVFGMPREAIASGGVSEVVDLSNISQH 336
                     7889***************99*************************************************999********876 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.2   8.9e-28     8e-24       1     102 [.       6     109 ..       6     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 8.9e-28
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEE.SSTS.HHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviilt.ahse.eedavealkaga 94 
                   v++vdD+ l+r+l++++++ + ++e+va+a d+  a +l+k+ ++++++lD++mp+mdGl++l+++ +    +pv++++  +++ +e + +al++ga
    EHU00043.1   6 VMCVDDSALMRQLMTEIINsHPDMEMVATAPDPLVARDLIKQFNPQVLTLDVEMPRMDGLDFLEKLMRLR-PMPVVMVSsLTGQgSEITLRALELGA 101
                   799****************88*********************************************8887.6888888854555699********** PP

                   SEEEESSG CS
  Response_reg  95 ddflsKpf 102
                   +df++Kp 
    EHU00043.1 102 VDFVTKPQ 109
                   ******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2672.57
//
Query:       EHU00044.1  [L=129]
Description: chemotaxis regulator transmitting signal to flagellar motor component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-32  110.5   0.0    5.3e-32  110.3   0.0    1.0  1  Response_reg  Response regulator receiver domain
     0.0091   15.4   0.5       0.87    9.0   0.2    2.0  2  SBP_bac_3     Bacterial extracellular solute-binding proteins


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   5.9e-36   5.3e-32       2     111 ..       9     120 ..       8     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 5.9e-36
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagadd 96 
                   l+vdD  ++r+++r+ll+e g+++v+eaedg +al +lk+  +d ++ D+nmp+mdGl+ll++ir++    +lpv+++ta++++e++++a +aga++
    EHU00044.1   9 LVVDDFNTMRRIVRNLLKELGFNNVEEAEDGVDALTKLKAGGFDFVISDWNMPNMDGLQLLQTIRADAamASLPVLMVTAEAKKENIIAAAQAGASG 105
                   8****************************************************************9998999************************* PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   +++Kpf+ + L ++l
    EHU00044.1 106 YVVKPFTAATLEEKL 120
                   *********999875 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0013        12      33     159 ..      25      57 ..       4      62 .. 0.61
   2 !    9.0   0.2   9.7e-05      0.87     143     188 ..      64     106 ..      59     127 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0013
                 HHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  33 akrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk 131
                  k+lg                                                                                              
  EHU00044.1  25 LKELG---------------------------------------------------------------------------------------------- 29 
                 33333.............................................................................................. PP

                 TSEEEEESSHHHHHHHHHTTSSSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 132 gaeivefdtleealqaLkngrvdavvad 159
                   ++ e ++  +al++Lk+g  d v+ d
  EHU00044.1  30 FNNVEEAEDGVDALTKLKAGGFDFVISD 57 
                 3445556666666666666666666665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 9.7e-05
                 HHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 143 ealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeya 188
                 + lq+L++ r+da++a+ pvl   ++ ++++ + +   + ++++ +
  EHU00044.1  64 DGLQLLQTIRADAAMASLPVLMVTAEAKKENIIAA---AQAGASGY 106
                 6799*****************99998888877776...33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1019.22
//
Query:       EHU00045.1  [L=213]
Description: chemotaxis regulator, protein phosphatase for CheY [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-74  250.5   3.3    1.5e-74  250.3   3.3    1.0  1  CheZ            Chemotaxis phosphatase, CheZ
     0.0055   16.4   0.8     0.0055   16.4   0.8    2.1  2  Laminin_I       Laminin Domain I
  ------ inclusion threshold ------
      0.096   12.6   0.5       0.97    9.3   0.1    2.3  2  Lipoprotein_20  YfhG lipoprotein
       0.11   12.3   0.1        0.2   11.5   0.1    1.3  1  DUF637          Possible hemagglutinin (DUF637)
       0.16   11.3   1.6       0.21   10.9   0.1    1.9  2  Delta_lysin     Delta lysin family
       0.17   11.9   2.8          4    7.4   0.1    2.2  2  phage_tail_N    Prophage tail fibre N-terminal


Domain annotation for each model (and alignments):
>> CheZ  Chemotaxis phosphatase, CheZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.3   3.3     5e-78   1.5e-74       2     202 .]      15     213 .]      14     213 .] 0.98

  Alignments for each domain:
  == domain 1  score: 250.3 bits;  conditional E-value: 5e-78
                 XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ   2 elfeeiGkltReLhdalrelgldekllekaaeeipdardrLeyvielTeqAAertldavekalpladklkeeakeleeewerllerelekeefrelvke 100
                 +++++iG+ltR+L+d+lrelgld +++++aae+ipdardrL+yv+++T qAA+r+l+ ve+a+p++dk+++ a +l+ +w++++e+++e+ ++relv++
  EHU00045.1  15 DIISRIGSLTRMLRDSLRELGLD-QAIAEAAEAIPDARDRLDYVVQKTAQAADRALNSVEAAQPHQDKMEAGAIALKGRWDAWFENPIELADARELVTD 112
                 6899*******************.9************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX.....XXXXXXXXXXXXXXX.XBXXSHHHHHHHHHH CS
        CheZ 101 veaflkeveektealkkqLleilmaQdfqDLtGQvikkvielvkeveskLvqllleasekeekekkeekeeeleGPvinaekredvvssQdeVDdLLss 199
                 ++++l ev+e+t+ ++kqLl+i+maQdfqDLtGQvik+++++++e+e++L+ +lle++++ ++ek++  +++l+GP++na +   +v++Qd+VDdLL+s
  EHU00045.1 113 TRQYLGEVPEHTSFTNKQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENMPEVSAEKRQVGTTLLNGPQVNAAAP-GIVANQDQVDDLLDS 210
                 ***********************************************************999999**************9876.*************** PP

                 HT- CS
        CheZ 200 LGF 202
                 LGF
  EHU00045.1 211 LGF 213
                 **9 PP

>> Laminin_I  Laminin Domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   1.9e-06    0.0055     148     225 ..       8      83 ..       4      92 .. 0.93
   2 ?    0.5   0.2      0.13     4e+02      52     104 ..     109     161 ..      98     185 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-06
   Laminin_I 148 aelkaAqkLLsrvqtllqklqeenkaLkealrdsLaeyeakLsDlrelleeAaaktrdanrlnlanqanlreiekkke 225
                 ae +aAq+  sr+ +l   l+  ++ L   l + +ae  +   D+r++l+  ++kt++a ++ l   ++ + +++k+e
  EHU00045.1   8 AEQAAAQDIISRIGSLTRMLRDSLREL--GLDQAIAEAAEAIPDARDRLDYVVQKTAQAADRALNSVEAAQPHQDKME 83 
                 7999***********************..888***************************9998888887778999997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
   Laminin_I  52 LaqeteeLqkkatqvlakaqkvnaesertlnnakeLa.ekikkladnikeilek 104
                 L+ +t+++ +++ + +  ++k   +++ + +  ++L  + ik++ d i+ei  +
  EHU00045.1 109 LVTDTRQYLGEVPEHTSFTNKQLLDIMMA-QDFQDLTgQVIKRMMDVIQEIERQ 161
                 44444444444433333332222222222.233333313355555555555554 PP

>> Lipoprotein_20  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00033      0.97      34      95 ..      68     130 ..      61     144 .. 0.81
   2 ?    1.6   0.2     0.079   2.4e+02     146     162 ..     146     162 ..     124     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00033
  Lipoprotein_20  34 amdCadrlssaeareeakrlt.edsWdeafkqsiLlanaeitlaerrkllerlnaysaqfpas 95 
                     a++  +  ++ + + ea +++ +  Wd+ f + i la+a+  +++ r++l ++ ++++   ++
      EHU00045.1  68 ALNSVEAAQPHQDKMEAGAIAlKGRWDAWFENPIELADARELVTDTRQYLGEVPEHTSFTNKQ 130
                     5566666778888999998874678*************************9998776655555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.079
  Lipoprotein_20 146 eettrKLenLtdiERqL 162
                     + ++r ++ + +iERqL
      EHU00045.1 146 QVIKRMMDVIQEIERQL 162
                     568999999*******9 PP

>> DUF637  Possible hemagglutinin (DUF637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.6e-05       0.2      94     171 ..      10      88 ..       2      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
      DUF637  94 sagvntai.nGGsfkdNlktallsslvsqlaaeganlIGdegeqlglaetspakvlaHAlvGgasaeatggdvagGaiG 171
                 +a+ +  i   Gs++  l+++l++  ++q+ ae+a++I d  + l+   ++ a+++  Al +  +a+ +++++++Gai+
  EHU00045.1  10 QAAAQDIIsRIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQKTAQAADRALNSVEAAQPHQDKMEAGAIA 88 
                 666666676679***********************************9999**************************97 PP

>> Delta_lysin  Delta lysin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     7e-05      0.21       2      12 ..      13      23 ..      12      27 .. 0.91
   2 ?   -1.5   0.2      0.53   1.6e+03       1       4 [.     136     139 ..     136     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
  Delta_lysin  2 AaDIISTIGDL 12
                 A+DIIS IG L
   EHU00045.1 13 AQDIISRIGSL 23
                 9********88 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.53
  Delta_lysin   1 MAaD 4  
                  MA+D
   EHU00045.1 136 MAQD 139
                  9**9 PP

>> phage_tail_N  Prophage tail fibre N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.7     0.011        34      96     128 ..      44      76 ..      34      84 .. 0.74
   2 ?    7.4   0.1    0.0014         4      86     116 ..     131     161 ..     116     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
  phage_tail_N  96 ddvrPevlrrleemveevarsasaaarnaadaa 128
                    ++ P++  rl+ +v++ a+ a  a ++  +a+
    EHU00045.1  44 AEAIPDARDRLDYVVQKTAQAADRALNSVEAAQ 76 
                   46779*************999988766554443 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0014
  phage_tail_N  86 lndfliamteddvrPevlrrleemveevars 116
                   l d ++a + +d+  +v++r+  +++e++r+
    EHU00045.1 131 LLDIMMAQDFQDLTGQVIKRMMDVIQEIERQ 161
                   7799************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1478.34
//
Query:       EHU00046.1  [L=383]
Description: putative flagellar export pore protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-125  419.0   0.2   1.5e-125  418.8   0.2    1.0  1  Bac_export_2  FlhB HrpN YscU SpaS Family
  ------ inclusion threshold ------
       0.37   10.9   0.1       0.37   10.9   0.1    2.2  2  TetR_C_21     Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.8   0.2  1.7e-129  1.5e-125       1     330 []       7     347 ..       7     347 .. 0.99

  Alignments for each domain:
  == domain 1  score: 418.8 bits;  conditional E-value: 1.7e-129
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2   1 eeKteepTpkklrdarekGqvakskelssalvllaglllllllgpslveelaellrevlsa...........lelllelllallllllplllvllla 86 
                   e+Kte +T+++l++are+Gq+++s+el+s+l+llag+++l++ g  ++++la+++++ ls+           ++++ +l+++++ +llpll  l+l+
    EHU00046.1   7 EDKTESATAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWVGGTAMAHRLAAMVSTGLSFdhgmvtddkiiIAHVGNLIMQAIAALLPLLGGLVLV 103
                   69*******************************************************999999****999998899********************* PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  87 allanllqvgflfstkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeldleaalelllslllkllllvlla 183
                   a+++ +l +g+++s k++k+++sklnpl g+kr+f +++++el+k +lk++lvg+va ++++ +++++l+l++ ++++al + +++++ +++lv+l 
    EHU00046.1 104 AIASPMLLGGVVISGKSIKVDFSKLNPLPGFKRMFAAQAWTELFKGILKTILVGCVAGWYIWTHWPDMLRLIAESPTTALIHGMDMIAICCALVMLG 200
                   ************************************************************************************************* PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHT-SEEEEETTTEEEEEEEETTTESSEEEEEEEEHHH CS
  Bac_export_2 184 llviallDlllqrwefekklkMtkqEvKdEyKesEGdpeiKsrirqlqrelarrrmmaevpkAdvvitNPthyAVALkYdpekmeaPvvvakGadel 280
                   l+ ++  D+++q +++ kkl+M++qE++dE+K++EGdp++K+rirq++r++arrrmma+vpkAdv++tNPthy+VAL+Y+++km+aP+v+akGa+e+
    EHU00046.1 201 LIPMVGYDVFWQLYSHFKKLRMSRQEIRDEHKQQEGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIAKGAGEI 297
                   ************************************************************************************************* PP

                   HHHHHHHHHHHT--EEE-HHHHHHHHHH--TTSB--GGGHHHHHHHHHHH CS
  Bac_export_2 281 AlkireiAeengvpivenppLAraLyatvevgqeIpeelyeaVaeiLayv 330
                   Al+ire+ +e+++p++e+ppLAraLy+++e+gq Ip +ly+aVae+La+v
    EHU00046.1 298 ALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWV 347
                   *************************************************8 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.2e-05      0.37      42      88 ..       8      53 ..       1      63 [. 0.77
   2 ?   -0.4   0.9      0.14   1.2e+03      87     111 .]     230     254 ..     215     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.2e-05
   TetR_C_21 42 aesleekvaairaaQraGtvdaswkpedlltlvlalasawaaapara 88
                 ++ ++   ++++a ++G++ +s + + ll+l+ +++  w+  +a +
  EHU00046.1  8 DKTESATAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWVGGTA-M 53
                44445556678889999***********************98777.3 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.14
   TetR_C_21  87 raaaaaadaeerarrraavveavrR 111
                 ++++++ d++ + r r+++++a+rR
  EHU00046.1 230 EHKQQEGDPHVKGRIRQQMRAAARR 254
                 5677888889999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2630.48
//
Query:       EHU00047.1  [L=696]
Description: putative flagellar export pore protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-268  892.1   4.9   2.7e-268  891.9   4.9    1.0  1  FHIPEP    FHIPEP family


Domain annotation for each model (and alignments):
>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  891.9   4.9  1.5e-272  2.7e-268       1     657 [.      31     684 ..      31     685 .. 0.97

  Alignments for each domain:
  == domain 1  score: 891.9 bits;  conditional E-value: 1.5e-272
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP   1 ivlmlilPlptlllDlllalnialsvlillvalyikkpldfsvFPtlLLittlfrLaLnvastrliLlegeeg...aGkvieaFgefvvggnlvvGlvv 96 
                 i+ m++lPlp+++lDll+++nials+++llva++++++l+f++FPt+LL++tl+rL+Lnvastr+iLleg++g   aG+v+eaFg+f+vggn+++G+vv
  EHU00047.1  31 ILSMMVLPLPPFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFSTLLRLSLNVASTRIILLEGHTGaaaAGRVVEAFGHFLVGGNFAIGIVV 129
                 799*********************************************************************9************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP  97 FlilvivqfvVitkGaeRvaEVaARFtLDamPGKqmaIDadlnaGlideeeArerreelereadfyGamDGAsKFvkGDaiagliitliniigGliiGv 195
                 F+ilvi++f+VitkGa+R+aEV+ARF LD+mPGKqmaIDadlnaGli e+eA++rr+e+++eadfyG+mDGAsKFv+GDaiag++i++in+igGl++G+
  EHU00047.1 130 FIILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKRRRAEVTQEADFYGSMDGASKFVRGDAIAGILIMVINVIGGLLVGI 228
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      FHIPEP 196 lqhgmslsealetYtlLtiGDGLvsqiPaLlisvaagiivtrvaseenlgeeivkqllanpkalliaagvllllalvpglpklvflllaallallayll 294
                 +qhgm++++a+etYtlLtiGDGLv+qiPaL+is+aag+ivtrva+++++ge++v ql+++p++l+++agv+ ll+lvpg+p++vfll++a+l++la+l 
  EHU00047.1 229 VQHGMDAGHAAETYTLLTIGDGLVAQIPALVISTAAGFIVTRVATDQDVGEQMVGQLFKDPRVLMLSAGVIGLLGLVPGMPNFVFLLFTAALLGLAWLR 327
                 *************************************************************************************************98 PP

                 XXXXXXX.......XXXXXXXXXXXXXX.........TS-EEEEE-GGGHHHHHHT.......HHHHHHHHHHHHHSS---SEEEEE-TT--TTEEEEE CS
      FHIPEP 295 kkkkkkeekeeekeeeeeeaeeeeeeeeeeveellk.vdplelelgyeliplvdeeqggeLlerikalrkqlaeelGlvvpeirirdnlelkpneyrik 392
                  ++ + ++  + ++ ++ +++ e+ +++e+++++++  d+l +e+gy+lip+vd++q+geLl ri+++rk++a+++G++ p ++irdn+el+p +yri 
  EHU00047.1 328 GREMQPKK--NVESPSSIAKSMETPASAEASWTDVQlEDTLGMEVGYRLIPMVDHNQNGELLGRIRSIRKKVAQDVGFLPPVVHIRDNMELPPARYRIL 424
                 88874443..33334444445556666799999999899************************************************************ PP

                 ETTEEEEEEE--TTSEEET........--EEEEETTE...EEEEE-HHHHHHHHTTT--EEEHHHHHHHHHHHHHHHCHHHCHCHHHHHHHHHHHHTTH CS
      FHIPEP 393 ikgvevaegelkpdkllalnpgevee.legeetkepafglpavwieeeqreeaeaagytvvdpssvlathlsevikrhaaellgrqevkklldelkkea 490
                 +kgve+++g+++p++++a+npg+++  l+ge+t +pafgl avwi+ + +e+a+ +g+tvv++s+v+athl+++i ++a+el+grqe+++lld++++e 
  EHU00047.1 425 MKGVEIGSGDAYPGRWMAINPGTATGtLPGEATVDPAFGLAAVWIDGALKEQAQIQGFTVVEASTVVATHLNHLIGQYASELFGRQEAQQLLDRVSSEM 523
                 **********************997758*********************************************************************** PP

                 HHHHHHHH.HHS-HHHHHHHHHHHHCTTXXXXXHHHHHHHHHHHTTTXXSHHHHHHHHHHHTHHHHHHHHH.TTSXEEEEEEXHHHHHHHHHHEEESSS CS
      FHIPEP 491 pklveelvpkllslgelqkvLqnLlkErvsirdlrtIletlaeaakktkdvellteavRqaLkrqivqklaeedgelkvitldpeleqalaeslkqseg 589
                 pkl e+lvp +++l++l+kvLqnLl Ervsird+rtI+etlae+a+ ++d+++lt+ vR aL+r+i+q+++  +ge++vi ld++le+ l ++l+    
  EHU00047.1 524 PKLTEDLVPGVITLTTLHKVLQNLLVERVSIRDMRTIIETLAEHAPVQSDPQELTSVVRVALGRAITQQWFPGTGEVQVIGLDATLERLLLQALQGGG- 621
                 **********************************************************************************************9644. PP

                 E..EEXXXHHHHHHHHHHHHHHH.CXXSXGGGXEEEEXCCCHHHHHHHHCTTXTTXEEEETCCCTTXS CS
      FHIPEP 590 egsalalepelaeklleklkeavekleekgekpvllvspevRrllrkllerelpelaVlsynEieeev 657
                       lep la++ll++++ea++++e++g++pvllv++ +R+ll+++l+r++p+l+Vls  E++++ 
  EHU00047.1 622 -----GLEPGLADRLLAQTQEALQRQEMMGAPPVLLVNHPLRALLARFLRRNMPQLVVLSNMELSDNR 684
                 .....69*********************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4900.19
//
Query:       EHU00048.1  [L=130]
Description: FlhE family flagellar protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-32  110.4   0.0    4.6e-32  110.2   0.0    1.0  1  FlhE      Flagellar protein FlhE


Domain annotation for each model (and alignments):
>> FlhE  Flagellar protein FlhE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   2.6e-36   4.6e-32       1     106 []      28     130 .]      28     130 .] 0.99

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 2.6e-36
        FlhE   1 GpalsqrGesasspalappasapaasavitsvsWryellsaapaglrvkLCsaerCveldgasGktealeglaAteplrfvfevpgkgalvpalrvasn 99 
                 Gp +++rG+++ss++l+pp+++   s++it v+Wry+++++ p+gl+v+LC+++rC eldgasG+t++l+++aA e+l++vf ++ +g+l p l+v+s+
  EHU00048.1  28 GPLMANRGSWQSSQPLTPPGQV---SGAITVVNWRYQFTQPVPSGLQVRLCAEQRCTELDGASGSTRGLAEVAAGETLHMVFGFASGGSLPPGLKVVST 123
                 899*******************...79************************************************************************ PP

        FlhE 100 qviVnYr 106
                  v+VnY+
  EHU00048.1 124 AVTVNYH 130
                 ******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 966.61
//
Query:       EHU00049.1  [L=231]
Description: aquaporin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-48  163.8  17.4    5.6e-48  163.6  17.4    1.0  1  MIP       Major intrinsic protein
  ------ inclusion threshold ------
        1.7    9.5  11.7       0.13   13.1   1.7    2.5  2  HXXEE     Protein of unknown function with HXXEE motif


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6  17.4   6.2e-52   5.6e-48       8     227 .]       2     223 ..       1     223 [. 0.92

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 6.2e-52
                 HHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHH CS
         MIP   8 lravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaiva 106
                 lr+++AE ++t+ lvf g+gsal ++++  ++     +++++v+lafgla+ +  +++++iSG+H+NPavTl+l+ +++i+ +  + YivaQ++G+i+a
  EHU00049.1   2 LRKAFAELFGTFWLVFGGCGSAL-LAANFPQT----GIGFVGVSLAFGLAVLTMAFAVGHISGGHFNPAVTLGLWAGGRIDSKTILPYIVAQMAGGIAA 95 
                 7999****************999.55555443....489************************************************************ PP

                 HHHHHHHCHHH........HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHH CS
         MIP 107 aallklltkgl........esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNpArsl 197
                 a++l+l+++g+          +a+ fa      +s   a++ E++l +++++v+ ++td++  +    +ap+aigl+++li+l++ip+t +++NpArs 
  EHU00049.1  96 AGVLYLIVSGQadftmadkGFAANGFAAHSPGRYSLCAAVITELVLSAFFLMVIQGATDKRAPAG---FAPIAIGLALTLIHLISIPVTNTSVNPARST 191
                 **********99999988756677777777778999**********************9887766...8****************************** PP

                 HHHHHHTHS..TTTTHHHHHHHHHHHHHHHHH CS
         MIP 198 gpavvlnkf..edhwvylvGPliGailgalvY 227
                 + av++  +   + wv+++ P+ G+++g+++Y
  EHU00049.1 192 AMAVFQGGWalRQLWVFWLVPIAGGVAGGWLY 223
                 *****97752279*****************99 PP

>> HXXEE  Protein of unknown function with HXXEE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.7     0.062   5.5e+02      57      94 ..      33      73 ..       4      88 .. 0.46
   2 ?   13.1   1.7   1.4e-05      0.13      34     103 ..     133     196 ..      93     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.062
       HXXEE 57 lallakrepllglallafllvn....lltHiaqalvlksYnP 94
                   ++  ++++gla+l ++++     +  H+ +a+ l+ +  
  EHU00049.1 33 GIGFVGVSLAFGLAVLTMAFAVghisG-GHFNPAVTLGLWAG 73
                222333344444444333333311323.45555555555555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.4e-05
       HXXEE  34 vaeefilvlvlvvnallvwlilalallakrepllglallafllvnlltHiaqalvlks.YnPGlvTalllf 103
                 +a+++ lvl +++++       +++ +  ++   g+a +a++l+++l+H+++  v+++  nP+  Ta+ +f
  EHU00049.1 133 AAVITELVLSAFFLM-------VIQGATDKRAPAGFAPIAIGLALTLIHLISIPVTNTsVNPARSTAMAVF 196
                 222333333333333.......44555677788889999**********9999999888********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1714.13
//
Query:       EHU00050.1  [L=42]
Description: hypothetical protein CKS_1841 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       105  (0.00585643); expected 358.6 (0.02)
Passed bias filter:                       99  (0.00552178); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 321.96
//
Query:       EHU00051.1  [L=576]
Description: arginyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-165  549.6   0.2   3.1e-165  549.3   0.2    1.1  1  tRNA-synt_1d     tRNA synthetases class I (R)
    1.1e-33  115.9   0.0      4e-33  114.1   0.1    2.0  2  DALR_1           DALR anticodon binding domain
    6.9e-22   77.8   0.1    1.9e-21   76.4   0.1    1.8  1  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
    8.2e-05   22.1   0.1    0.00014   21.3   0.1    1.3  1  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
  ------ inclusion threshold ------
      0.022   13.5   0.0      0.043   12.6   0.0    1.5  1  tRNA-synt_1g     tRNA synthetases class I (M)
      0.033   12.4   0.0       0.05   11.8   0.0    1.2  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.3   0.2    1e-168  3.1e-165       4     349 .]      98     446 ..      95     446 .. 0.98

  Alignments for each domain:
  == domain 1  score: 549.3 bits;  conditional E-value: 1e-168
                   HHHCCTTTT.---SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCH CS
  tRNA-synt_1d   4 siLvqkrklqkksrekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeaf 100
                   ++L + r+ +++  e +++vvd+s+Pn+akemhvGh+rstiiGda++r+leflG++vir+nhvGDWGtqfG+Lia+lek+q+e+ + e+ l+dLe+f
    EHU00051.1  98 QALNHPRL-GVNPVEPQTIVVDYSAPNVAKEMHVGHVRSTIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHA-EMALADLEGF 192
                   56666666.5888999********************************************************************66.********** PP

                   HHHHHHHCCCSHCCCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC...--CCCCCCCHHHHHHHHHCTT-EEECTTCEEEEE CS
  tRNA-synt_1d 101 ykeakkdydeeeifaerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie...rGeslykeslneivkelkkkglvkesdGalvvfl 194
                   y+eak+ yde+ +faerar yvvkLq+gd+++r++wk+lvdit+t++q++y+rl+vtl++   +Gesly+++l+eiv++lk+kgl++es+Ga+vvfl
    EHU00051.1 193 YREAKRTYDEDPEFAERARGYVVKLQGGDDYCRQMWKKLVDITMTQNQHIYNRLNVTLTRddvMGESLYNDMLPEIVADLKAKGLAVESEGATVVFL 289
                   ************************************************************************************************* PP

                   CCC....TSSCCEECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE--EE-TTSSBSBCSSST CS
  tRNA-synt_1d 195 def....gkrlgvvvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanfGmvlgkdkkkfktrkGe 287
                   +ef    g+++gv++qk+DGgylytttDia+a++r+e+l+ad+v+y+idsrq++hlqq++ i++k+gyvp s++leh+ fGm+lgkd+++fktr+G+
    EHU00051.1 290 EEFqnkeGEPMGVIIQKKDGGYLYTTTDIACARYRYETLHADRVIYYIDSRQHQHLQQAWTIVRKAGYVPASVPLEHHAFGMMLGKDGRPFKTRSGG 386
                   ************************************************************************************************* PP

                   C-BHHHHHHHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE--H CS
  tRNA-synt_1d 288 tvkLadlLdealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifdw 349
                   t+kL dlLdea era +l++ekn+d  ++ +e   +ae+vg++a+kyaDlsk r++dyifdw
    EHU00051.1 387 TIKLSDLLDEAYERAYTLVREKNPD--MTEEEVSTLAEVVGISAVKYADLSKSRTTDYIFDW 446
                   *************************..**********************************9 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   6.8e+03      37      63 ..      46      73 ..      37     107 .. 0.61
   2 !  114.1   0.1   1.3e-36     4e-33       1     119 []     460     576 .]     460     576 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
                HHHHHHHTHHHHHH.HHHHHT-THHHHH CS
      DALR_1 37 eLlkalaqfpevle.eaaeelephklae 63
                +++k+l q p+ l+ +++++l++  +a+
  EHU00051.1 46 AVAKKLGQAPRQLAeTVIQHLDLTGIAS 73
                5666777776654403445555555544 PP

  == domain 2  score: 114.1 bits;  conditional E-value: 1.3e-36
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvka 99 
                 +qya++R+ s++rka+ + ++   +a+ +l++++e  L+ +l+qf+ev++++a++ +ph+++ yly+La  f+ fY+++++l +e+++++ +RL+++ +
  EHU00051.1 460 MQYAYTRVLSVFRKAGIDADA--IQAEIVLTDDREALLATRLLQFEEVITQVARDGTPHVMCAYLYDLAGLFSGFYEHCPILAAEDDVTRLSRLQIAAL 556
                 6***************88744..44444559******************************************************************** PP

                 HHHHHHHHHHHTT----S-- CS
      DALR_1 100 vrqvLangLdlLGieapekm 119
                 ++++L+ gLd LGi+++++m
  EHU00051.1 557 TAKTLKLGLDTLGIKTVDRM 576
                 *******************9 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   6.4e-25   1.9e-21       3      85 .]       3      87 ..       1      87 [. 0.91

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 6.4e-25
                     HHHHHHHHHHHHH..SS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEEE CS
  Arg_tRNA_synt_N  3 lkeaiaealkkaa..gadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNffL 85
                     +++++++++++a     ++++ e+++ ++++ +fGDy+ n +m  akkl+++Pr++Ae+++++l+ ++i +kve+agpGFiN+fL
       EHU00051.1  3 IQALLSAKVSQAMvlAGAPSDCEPQVRQSAKVQFGDYQANGIMAVAKKLGQAPRQLAETVIQHLDLTGIASKVEIAGPGFINIFL 87
                     6777777777777775678999**************************************************************8 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   4.7e-08   0.00014       5     134 ..     110     291 ..     107     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.7e-08
                   SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHH.HHHHHHTTS-............................. CS
  tRNA-synt_1e   5 leekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDki.ikrareeeks............................. 71 
                   +e +++ +    p v  ++h+Gh+Rs+++ D   r+l+ lg++v   + v D   +  ++ a  e+++                             
    EHU00051.1 110 VEPQTIVVDYSAPNVAKEMHVGHVRSTIIGDAAVRTLEFLGHNVIRANHVGDWGTQFgMLIAFLEKQQnenhaemaladlegfyreakrtydedpef 206
                   5566666666789999************************************987643333332222234789************************ PP

                   .....................HHHHHHHHHHHHHHHHHHTT----SB--.BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GG CS
  tRNA-synt_1e  72 .....................vkelaekfieefkkdleaLnvlkptlep.rvsekvdeiielvekliekgyaYavsdgdvyfdvs 134
                                        +k+l++  +++ ++ ++ Lnv  +       s + d + e+v+ l +kg a +++  +v+f  +
    EHU00051.1 207 aerargyvvklqggddycrqmWKKLVDITMTQNQHIYNRLNVTLTRDDVmGESLYNDMLPEIVADLKAKGLAVESEGATVVFLEE 291
                   ********************999*******************875544404455667789***************9989888655 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05     0.043       6      65 ..     120     180 ..     115     208 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
                   --B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHH.HHHHHHTTS-HHH CS
  tRNA-synt_1g   6 alpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpi.elkAekegvtpee 65 
                   + p +  ++H+Gh++++i++D+ +R     g++v+       +Gt+  +l A  e+ + e+
    EHU00051.1 120 SAPNVAKEMHVGHVRSTIIGDAAVRTLEFLGHNVIRANHVGDWGTQFgMLIAFLEKQQNEN 180
                   56778899**************************988888888877534455555555555 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05      0.05      29     113 ..     119     202 ..     100     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
  tRNA-synt_1  29 dgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefrekvrewkaeyae 113
                     P+v  ++H+Gh+  +++ d  +r+ ++ G++v +   +   G    + +   l ++++++ ++++ ++     re k +y e
   EHU00051.1 119 YSAPNVAKEMHVGHVRSTIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAF-LEKQQNENHAEMALADLEGFYREAKRTYDE 202
                  567********************************9998888888877777754.566667777888888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4691.21
//
Query:       EHU00052.1  [L=39]
Description: hypothetical protein CKS_1839 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.012   16.0   1.9      0.013   15.8   1.9    1.2  1  FeoB_associated  FeoB-associated Cys-rich membrane protein
      0.052   12.9   0.2      0.054   12.9   0.2    1.0  1  DUF2162          Predicted transporter (DUF2162)
      0.062   13.8   0.4      0.075   13.5   0.4    1.1  1  DUF2542          Protein of unknown function (DUF2542)


Domain annotation for each model (and alignments):
>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.9   2.3e-06     0.013       3      23 ..       4      24 ..       2      35 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-06
  FeoB_associated  3 iIVgliiaaavafvirrlikk 23
                     +IV +i++a+++f++ r++k 
       EHU00052.1  4 LIVVAILIALMGFALARHWKV 24
                     69*****************96 PP

>> DUF2162  Predicted transporter (DUF2162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     9e-06     0.054      65      95 ..       1      31 [.       1      36 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-06
     DUF2162 65 mvlhllmAlllialGlytlkkwkkskkdvss 95
                m++ +++A+l+ ++G+ + ++wk+ + ++ +
  EHU00052.1  1 MTMLIVVAILIALMGFALARHWKVRADKSVK 31
                7899*******************96555444 PP

>> DUF2542  Protein of unknown function (DUF2542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.3e-05     0.075       6      41 ..       4      35 ..       1      37 [. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
     DUF2542  6 ifvviavllvplfclreaykGwraGavdkvvknare 41
                + vv++++ ++ f+l   +k       dk vknar+
  EHU00052.1  4 LIVVAILIALMGFALARHWK---VR-ADKSVKNARR 35
                33444444455566666555...44.4*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      808  (0.0450667); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 331.92
//
Query:       EHU00053.1  [L=186]
Description: putative metal-binding enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-68  227.8   0.0    8.1e-68  227.6   0.0    1.0  1  YecM      YecM protein


Domain annotation for each model (and alignments):
>> YecM  YecM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.6   0.0   4.5e-72   8.1e-68       2     180 .]       9     184 ..       8     184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 227.6 bits;  conditional E-value: 4.5e-72
                 GHHHHHHHHHHHHHHHHHHHHHT---TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS--SS CS
        YecM   2 lkelledlkeFeqkiqqlakklgldlsqleiDHialRvneeetaeawkeallqegellseneiNGRpIllfkLeqplqveeqkidvvELPypkekkypq 100
                 l++l +dl++Fe+++q++ ++lgl+ ++l++DH+a+R+++++tae+w++++lq ge +s ++iNGRp++lfkL+qpl +++++idvvELP+p+ek+y++
  EHU00053.1   9 LDDLQADLAAFEERLQNFSQRLGLNPTDLDVDHVAVRCHQNATAERWQKGFLQLGEQFSAAMINGRPVCLFKLHQPLMIAGWAIDVVELPWPGEKRYRH 107
                 67999********************************************************************************************** PP

                 -EEEEEEEE--S-GGGHHHHHHHTS-HHHHHST...T-EEEE--------------EEEESSS-EEEEESS-HHHHHHH- CS
        YecM 101 egwEHielVlpseaqeleeealallekeallkkelegikvklsspkgekerLpnptlaikkneitiKlHphslkeivesE 180
                 e wEHie+Vl++e+++l  +a+all+++al+++   gi++k+sspkge+erLpnptla++++e+tiK+Hp++l eiv+sE
  EHU00053.1 108 ERWEHIEVVLRGEPETLGMRAMALLSDQALTQP---GISFKTSSPKGENERLPNPTLAVTDGETTIKFHPWRLDEIVASE 184
                 ****************************99999...9*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1523.89
//
Query:       EHU00054.1  [L=380]
Description: aminotransferase class I and II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-27   97.1   0.0    1.4e-27   96.8   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.15   11.3   0.0       0.24   10.6   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   1.6e-31   1.4e-27      24     363 .]      47     372 ..      30     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.6e-31
                    HHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEE CS
  Aminotran_1_2  24 akaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvr 119
                    +ka        +++  yg+    + +  al+   ++++  ++k+e  vvv++G   +++++ +++   p++  ++p p y+++  +++l+      
     EHU00054.1  47 IKA-----RVDHGVFGYGDKP--QGFIDALIARCKSRYHWEVKPE-WVVVLPGVVCGLNLAVRAF-TAPHQGTVAPHPIYPPFRSAAKLAERDQLN 133
                    333.....3447777788777..8889999999999999******.*******999999999999.79**************************** PP

                    EEBEET.TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTHHH.HGGSTTSTT CS
  Aminotran_1_2 120 yplyse.edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl.davat.ranveeepn 212
                     pl+ +   + +dl a +   +        + ++ +++p+NP Gtv+ +eele+ l++a+ + l++ +De++ ++ +++  ++  +  a ++++ +
     EHU00054.1 134 LPLTLQeGHWVMDLTAADGHMQ-------DKTLLMLCNPQNPGGTVYRREELEAQLAFAQHHDLIVCSDEIHCDLLLTPGlQH--IpFASLSDDAA 220
                    **77442455555555555444.......568*********************************************954444..34555555555 PP

                    ..EEEEEESSSTTSSGGG-EEEEEE.EHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS.TEEEECCS CS
  Aminotran_1_2 213 ..llivgslsKafGlaGeRvGyilg.naavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael.glkvlasq 303
                       +++ s sK f++aG+    +++ +++++   + + +++     +l+ ++a+++  a   +++l++  + l  +r+ l++e ++l glk+++++
     EHU00054.1 221 qrSITLLSPSKTFNIAGLGASVAVIpDPELRARFTAVRQGIVPsVDILALVAAEVAWRAC--DDWLDAQLDYLRGNRDWLVSEVNALpGLKMTSPE 314
                    789**************6655666666699998888877755445556666666665555..56******************************** PP

                    CSSEEEEEETHHCHHHHHHH....HHHT.CTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 304 sgmflltdlsaetakelskk....Llee.vgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    + ++ + d +++      ++    L  e +g+  +pg+ f+  g++Ri++ g++++ lee+v++l
     EHU00054.1 315 GSYLGWIDAREL------QVaspaLYFEkHGLGFSPGRDFGDDGFVRINF-GCPRALLEEAVRRL 372
                    ***********9......44455687777*********************.***********997 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.7e-05      0.24     120     167 ..     149     195 ..     141     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.7e-05
                      -S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 120 evgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      + + h+++  l++l +  n  gG+v+  eel++  a+a+ +++ ++ D
       EHU00054.1 149 AADGHMQDKTLLMLCNPQNP-GGTVYRREELEAQLAFAQHHDLIVCSD 195
                      44559**************5.**********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2797.99
//
Query:       EHU00055.1  [L=250]
Description: copper homeostasis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-71  239.3   0.0    3.4e-71  238.9   0.0    1.1  1  CutC      CutC family


Domain annotation for each model (and alignments):
>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.9   0.0   1.9e-75   3.4e-71       2     200 ..       3     199 ..       2     201 .. 0.99

  Alignments for each domain:
  == domain 1  score: 238.9 bits;  conditional E-value: 1.9e-75
        CutC   2 llEvcveniesllaaqaagadRvELCaalavgGltPslgvlkeaaeeakipvyvmiRPRgGdFvysdeelkamleDieaarelgldgvvlGaltadgei 100
                 +lE+c+++++++l+aq+agadR+ELCaa+ +gGltPs+g+l+ a+++ ++pv++++RPRgGdF+ys++e++am++D++ +relg++g+vlG+l++d++i
  EHU00055.1   3 TLEICCYGVDCALTAQQAGADRIELCAAPREGGLTPSAGMLEVARRDISVPVHPIVRPRGGDFCYSSREFEAMKSDVARIRELGFPGLVLGMLDEDAHI 101
                 58************************************************************************************************* PP

        CutC 101 DlkaleklieaaegLgvtfHrAfDvvadpeealeqlielgvervLtsGqkssalegleklaeLveqaaerieimagaGvnaenvaelakktGvaevHls 199
                  + +++++++  +g++vtfHrAfD ++ p+++l+ l ++gv+r+LtsGq++s  +g+  l+eL e++++ i imagaGv+  n++++ + + ++evH+s
  EHU00055.1 102 HVGQMRQIMALCDGMAVTFHRAFDLCHRPKRSLDVLTDFGVKRILTSGQQQSVENGIALLRELNEYSSGPI-IMAGAGVRLSNLQKFLD-ADIREVHSS 198
                 ***********************************************************************.***************99.99******9 PP

        CutC 200 a 200
                 a
  EHU00055.1 199 A 199
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1875.22
//
Query:       EHU00056.1  [L=281]
Description: hypothetical protein CKS_1835 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.2    8.9  17.9       0.37   11.4   3.2    3.9  4  RHS_repeat  RHS Repeat


Domain annotation for each model (and alignments):
>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.5    0.0021        38      17      30 ..     157     171 ..     152     178 .. 0.78
   2 ?    7.9   0.3   0.00026       4.6      10      34 ..     176     201 ..     168     204 .. 0.79
   3 ?   11.4   3.2   2.1e-05      0.37       2      29 ..     190     216 ..     189     230 .. 0.74
   4 ?   -3.5   0.1      0.96   1.7e+04      18      23 ..     268     274 ..     262     280 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0021
  RHS_repeat  17 v.ttYtYDaqGrltt 30 
                 + ttY+YD + rl++
  EHU00056.1 157 TdTTYRYDKHYRLLK 171
                 4589******99986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00026
  RHS_repeat  10 vtdp.sGrvttYtYDaqGrlttlTdp 34 
                  tdp s   ++Y + +qG +t +T +
  EHU00056.1 176 GTDPvSNGEYRYAWSPQGLVTRTTSA 201
                 3888877789***********99987 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 2.1e-05
  RHS_repeat   2 DaaGrLtevtdpsGrvttYtYDaqGrlt 29 
                  ++G +t++t +  r +tYtYD+ Gr +
  EHU00056.1 190 SPQGLVTRTTSAR-RKDTYTYDDKGREL 216
                 6789888886664.4789********74 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 0.96
  RHS_repeat  18 ttYtY.D 23 
                 + Y+Y D
  EHU00056.1 268 YKYQYwD 274
                 4566633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1971.42
//
Query:       EHU00057.1  [L=365]
Description: glycerol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-63  214.4   1.1    2.5e-63  214.1   1.1    1.0  1  Fe-ADH           Iron-containing alcohol dehydrogenase
    6.2e-36  124.4   1.6    7.6e-36  124.1   1.6    1.1  1  Fe-ADH_2         Iron-containing alcohol dehydrogenase
     0.0001   21.6   1.2     0.0019   17.4   1.2    2.6  1  DHQ_synthase     3-dehydroquinate synthase
     0.0047   16.5   0.0     0.0099   15.5   0.0    1.5  1  AIRC             AIR carboxylase
     0.0087   15.4   0.0      0.014   14.7   0.0    1.2  1  PFK              Phosphofructokinase
  ------ inclusion threshold ------
      0.077   12.2   0.0       0.13   11.4   0.0    1.3  1  Polysacc_deac_2  Divergent polysaccharide deacetylase
       0.13   11.9   0.1       0.36   10.5   0.0    1.7  2  DUF1580          Protein of unknown function (DUF1580)


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   1.1   9.8e-67   2.5e-63       1     344 [.       9     326 ..       9     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 9.8e-67
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P+++v+g+g+l+elge++ +lg ++a++v+d  ++  + + +++++ le+agi++   ++++++ +  e+ ++ + a+++g++vvi++GGG+++Dt Ka
  EHU00057.1   9 PRKYVQGAGVLDELGEYVTELG-NHAFVVADDVVW-GL-IGERAQSTLEKAGITLS-RQQFNGEASSNEITRLSQHAQQQGCNVVIGLGGGKTLDTVKA 103
                 89********************.9***********.44.778899999********.799*************************************** PP

                 HHHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvs 198
                 +a  l+                   p++++PT+a+t++++++l+vi+ +++g+  s++ ++ +Pdl+++D+++++ +P+r++a++++D la+++Ea + 
  EHU00057.1 104 VADELK------------------QPVVIVPTIASTDAPCSALSVIY-SDSGVFESYRFYSKNPDLVLIDTAVCAAAPARLFASGIADGLATWVEAQTV 183
                 ******..................59*********************.999999999999************************************998 PP

                 .H.......T---TTS.......SB--HHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHH.HHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHH CS
      Fe-ADH 199 .k.......kanplsd.......alaleairliaknleravad...gedleareqmllastl.aglafsnaglgavHalahalgalfgiphglanaill 278
                  +       +             a+a+++ ++++++   a+     ++   a e++++a+tl +gl+f+nagl+ +Ha++++++a+ g  h+l++++++
  EHU00057.1 184 aRshaksmvN-----GdptiaglAIARACEETLLTWGYSAYIAvseKRVTPAVEAVVEANTLlSGLGFENAGLAGAHAIHNGFTAIDGDIHHLTHGEKV 277
                 4464444442.....14444444455555555555544444441115566***********************************44556********* PP

                 HHHH..........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHH CS
      Fe-ADH 279 pavlrfnaeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvdeedldklae 344
                 ++++          l q++ +       ++++e+i++ +++++++++pt+L+e+++d   ++ l++
  EHU00057.1 278 AYGT----------LTQMVLE-------QRPDEEIARYIRFYRSINMPTTLKEMHLDGVSWENLVK 326
                 ****..........9999999.......9*************************998866655554 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   1.6     3e-39   7.6e-36       3     250 .]      15     278 ..      13     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 3e-39
    Fe-ADH_2   3 gegaleklgellkelelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvp 101
                 g g+l++lge+++el++ ++++vad  ++ ++ge+ +++l++agi+++ ++++++ea+ +e+ +l++ ++++++++v+++GgG+ +D++k v+ +l+ p
  EHU00057.1  15 GAGVLDELGEYVTELGN-HAFVVADDVVWGLIGERAQSTLEKAGITLS-RQQFNGEASSNEITRLSQHAQQQGCNVVIGLGGGKTLDTVKAVADELKQP 111
                 689**********9975.6889*************************8.889*********************************************** PP

    Fe-ADH_2 102 yvsvpTaaSvDGfaspgaslvvd.gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklan...evse..........plakls 185
                 +v+vpT aS D  +s  + ++ d g  +++    + P  v++D+ v+a+AP+rl asG++D l+ ++   +   ++   +v+            +++++
  EHU00057.1 112 VVIVPTIASTDAPCSALSVIYSDsGVFESYrFYSKNPDLVLIDTAVCAAAPARLFASGIADGLATWVEAQTVARSHaksMVNGdptiaglaiaRACEET 210
                 ***********************99999999899*********************************77766655555544444433333222444444 PP

    Fe-ADH_2 186 aamvqeaaeklvedkketealeelleal.alsgigisrpaSGsEHliSHaldmlal..kqalHGeqVG 250
                   +   +a  +v++k+ t a+e+++ea  +lsg+g+++++  + H i   + ++    ++ +HGe+V+
  EHU00057.1 211 LLTWGYSAYIAVSEKRVTPAVEAVVEANtLLSGLGFENAGLAGAHAIHNGFTAIDGdiHHLTHGEKVA 278
                 444445555557788889999*****96599*********9999***9988887545589******96 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.2   7.4e-07    0.0019      26     245 ..      81     314 ..      64     330 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.4e-07
                   TT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE-..--SEEEEEGGGGGGS-HHHHHHHHHHH CS
  DHQ_synthase  26 akleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafa..qPkavlidlevLktLperelraGlaEv 120
                   a+ +  +++i lGGG  +D +  vA  ++    +v vPt  +a  D+   +   i  + g      f+  +P++vlid++v ++ p+r +++G+a+ 
    EHU00057.1  81 AQQQGCNVVIGLGGGKTLDTVKAVADELKQP--VVIVPT--IASTDAPCSALSVIYSDSGVFESYRFYskNPDLVLIDTAVCAAAPARLFASGIADG 173
                   4444456889999999999999999999875..466777..788888888888888888877777776447*********************99997 PP

                   HHHHHHT-HHHHHHHHHHHHHHHC................TTTHHHHHHHH.............HHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHH CS
  DHQ_synthase 121 iKyalikdeelfelleenaeallk................eeeeealeeli.............arsievkaevveeDekekglralLnlGHtigHa 188
                   + + + +++      +++a+++++                +         +             +r + + + vve++   +gl  + n G   +Ha
    EHU00057.1 174 LATWVEAQTV----ARSHAKSMVNgdptiaglaiaraceeT---------LltwgysayiavseKRVTPAVEAVVEANTLLSGL-GFENAGLAGAHA 256
                   6554433222....233333333344556666555544331.........3344444433444333333444555555555554.34699999**** PP

                   HHHHHTT.....TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT CS
  DHQ_synthase 189 iEallgy.....ekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel 245
                   i + ++      ++l+HGe Va+G ++++ l ++     +ee++r++++ +++++p++lke 
    EHU00057.1 257 IHNGFTAidgdiHHLTHGEKVAYGTLTQMVLEQRP----DEEIARYIRFYRSINMPTTLKEM 314
                   *9988877777799**************9999665....78999*************99988 PP

>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06    0.0099      16     101 ..      47     132 ..      42     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEES.S--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHHT CS
        AIRC  16 kkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGg.aahLpgvvaslttlPVigvPvkskalkgldsllSivq 101
                 ++a+++l++ g++++ +      + +e++++ ++a+++g++v+I   Gg   +   +va   + PV+ vP+ + ++++  s lS++ 
  EHU00057.1  47 ERAQSTLEKAGITLSRQQFNGEASSNEITRLSQHAQQQGCNVVIGLGGGkTLDTVKAVADELKQPVVIVPTIA-STDAPCSALSVIY 132
                 678899999999999999999999********************998884667888999999********998.5566666666665 PP

>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.4e-06     0.014      55     140 ..      49     129 ..      25     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
                 GTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S-- CS
         PFK  55 vsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvviGGdgslkganklseerkglleelkivgiPkTidNDipgtdyt 140
                  ++ l++ G  L  ++ +   +++++ ++ ++ +++g + ++ +GG ++l+++++ ++e k+     ++v++P   + D p++ ++
  EHU00057.1  49 AQSTLEKAGITLSRQQFNGEASSNEITRLSQHAQQQGCNVVIGLGGGKTLDTVKAVADELKQ-----PVVIVPTIASTDAPCSALS 129
                 5667788888888888888777788**********************************977.....9**9999888888877665 PP

>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.1e-05      0.13     160     208 ..      69     116 ..      44     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
                      HHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTEEE-- CS
  Polysacc_deac_2 160 airkqlkklaklakkkGsaiaighprpetieaLkewlpeleaegielvp 208
                      a  +++ +l ++a+++G  ++ig  + +t++++k++++el++  + +vp
       EHU00057.1  69 ASSNEITRLSQHAQQQGCNVVIGLGGGKTLDTVKAVADELKQP-VVIVP 116
                      5678899**********************************97.99998 PP

>> DUF1580  Protein of unknown function (DUF1580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.36       7      51 ..      63     106 ..      59     110 .. 0.92
   2 ?   -3.3   0.0       2.7     7e+03      40      49 ..     224     234 ..     220     238 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
     DUF1580   7 eletGrrvsvstilRWslkpnrHGvkLetwriGgrRlTsveAVrr 51 
                 ++++G   s   i+R s++  + G+     + Gg+ l +v+AV +
  EHU00057.1  63 QQFNG-EASSNEITRLSQHAQQQGCNVVIGLGGGKTLDTVKAVAD 106
                 69999.889999*******************************76 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
     DUF1580  40 grRlT.sveAV 49 
                  +R T +veAV
  EHU00057.1 224 EKRVTpAVEAV 234
                 57888568888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2583.70
//
Query:       EHU00058.1  [L=207]
Description: putative LysE family transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-36  125.9   8.6    1.5e-36  125.7   8.6    1.0  1  LysE          LysE type translocator
     0.0043   16.7   0.3     0.0059   16.3   0.3    1.6  1  TerC          Integral membrane protein TerC family
  ------ inclusion threshold ------
        3.1    7.5   5.3        2.2    8.0   0.1    2.5  2  SPT_ssu-like  Small subunit of serine palmitoyltransferase-li


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   8.6   2.5e-40   1.5e-36       1     192 [.      13     205 ..      13     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 2.5e-40
        LysE   1 lslllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve..aslv 97 
                 ++l l+pG +++l+l+ ++++g++ + ++algv++g + + +++ lGl +Ll a++ + ++l+++G+ayLlwlgv  l    +++   ++++   ++  
  EHU00058.1  13 IILTLTPGFDTALILRSAAAQGWRRASATALGVATGCLSWGIAVGLGLGALLLASETAYNLLKWAGAAYLLWLGVRLLWHPRRQNAALPAETPsqQTHL 111
                 5899***********************************************************************999887777766555544468999 PP

        LysE  98 kpflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavkllle 192
                   fl+gll +l+NPk+ +f++ ++++++ +++  +++  l +a++++v  liw s+l+ ++  +++ l++++vl i++ ++g+++igfa+kl+l+
  EHU00058.1 112 ACFLRGLLGNLLNPKVGVFYVTFLPQFIPQGGSVPVWCTL-MALTHMVTGLIWSSVLIGSSHYFAAQLRKPRVLTIMDRLTGCVFIGFAAKLALS 205
                 *****************************87888888665.56*************************************************986 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   9.9e-07    0.0059      35      90 ..      51     102 ..      10     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.9e-07
        TerC  35 llGilgAlvlRillillavallelfdlilligglfLlytavkellekrlenklvke 90 
                  +Gi++ l l +ll+++    +  ++l++ +g+++Ll+++v++l++ r +n +   
  EHU00058.1  51 SWGIAVGLGLGALLLAS--ETA--YNLLKWAGAAYLLWLGVRLLWHPRRQNAALPA 102
                 44444444433333333..222..4799*****************97733333322 PP

>> SPT_ssu-like  Small subunit of serine palmitoyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.4     0.085   5.1e+02      28      41 ..       5      18 ..       3      21 .. 0.81
   2 ?    8.0   0.1   0.00036       2.2      28      48 ..     155     175 ..     149     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.085
  SPT_ssu-like 28 fnilifillsllli 41
                  f++++f +++l+l+
    EHU00058.1  5 FLSFLFAIIILTLT 18
                  88999999999987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00036
  SPT_ssu-like  28 fnilifillsllliaaslYlp 48 
                    +++  +++s +li++s+Y+ 
    EHU00058.1 155 THMVTGLIWSSVLIGSSHYFA 175
                   5788899************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1530.46
//
Query:       EHU00059.1  [L=322]
Description: tRNA methyltransferase, S-adenosyl-L-methionine-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-163  541.3   0.0   6.3e-163  541.1   0.0    1.0  1  Methyltransf_9   Protein of unknown function (DUF1698)
    1.3e-10   41.4   0.0    2.5e-10   40.5   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    2.9e-09   36.9   0.0    7.5e-09   35.6   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
    1.7e-07   31.8   0.0    5.3e-07   30.2   0.0    1.9  3  Methyltransf_25  Methyltransferase domain
    2.3e-07   31.4   0.0    5.4e-07   30.2   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    8.8e-06   26.4   0.0    1.7e-05   25.5   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    6.4e-05   22.4   0.0    9.1e-05   21.9   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0023   17.7   0.1      0.008   15.9   0.1    1.8  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.078   12.3   0.0       0.13   11.6   0.0    1.3  1  DUF4568          Domain of unknown function (DUF4568)


Domain annotation for each model (and alignments):
>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.1   0.0  3.2e-166  6.3e-163       1     315 []       7     321 ..       7     321 .. 0.99

  Alignments for each domain:
  == domain 1  score: 541.1 bits;  conditional E-value: 3.2e-166
                     HHHHHCTSTTHHHHHCHHHHHHHHH.HCTCCHHHCCHHHHHCS-----SEEESSSS-EEE-SS..-HHHHHHHHHHHHTT----CE-EEETTEEE CS
  Methyltransf_9   1 fykqiakaklsewletlpaqlkewq.ekehgdlkrwakaleklpelkpdsidlkdsvtiekeeqlsegekkklekllralmPWrkGPfslfGvdi 94 
                     fy+qia   l++wle+lpaq++ewq e+ hg+++ w k+le lp+l+p+++dl +sv+++++ ++s+ +++ +ekllr+lmPWrkGP+sl+G +i
      EHU00059.1   7 FYQQIAVGPLAKWLEVLPAQISEWQrENLHGHFRDWYKSLEYLPQLEPQRLDLLHSVSADRD-DISDRHRQGIEKLLRNLMPWRKGPYSLYGTEI 100
                     8************************8999*****************************9988.9******************************* PP

                     --SEEHHHHHHHHGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEEEE CS
  Methyltransf_9  95 dteWrsdwkWdrvlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvfsm 189
                     +teWrsdwkWdrvlph+s l grt+ldvGcg+Gyh+wrm+g+ga+lvvGidP++lfl+qfeavrkll++d+rahllplgieqlp l+afdtvfsm
      EHU00059.1 101 NTEWRSDWKWDRVLPHISSLAGRTVLDVGCGSGYHMWRMIGAGAHLVVGIDPMQLFLCQFEAVRKLLNDDRRAHLLPLGIEQLPVLQAFDTVFSM 195
                     *********************************************************************************************** PP

                     S-GGG-S-HHHHHHHHHCTEEEEEEEEEEEE-BSS-TT-EE--SS-BTTBSS---EEBHHHHHHHHHHTT-EEEEEEEEEE--TTTB--BTTB-S CS
  Methyltransf_9 190 GvlyhrrsPldhllqlkdqlvkgGelvletlvieGdenavlvPedryakmrnvyfiPsaaalkvWlekvgfvdvrivdesvttleeqrkteWlet 284
                     GvlyhrrsPldhl+qlk+qlv+gGelvletlvieGd n+vlvP +rya+mrnvyfiPsa+alk Wlek+gfvdvrivd +vtt++eqr+t+W++ 
      EHU00059.1 196 GVLYHRRSPLDHLMQLKNQLVSGGELVLETLVIEGDVNQVLVPGERYAQMRNVYFIPSAEALKSWLEKCGFVDVRIVDFAVTTTDEQRRTDWMTS 290
                     *********************************************************************************************** PP

                     --HHHHEETTEEEEETTSSB--EEEEEEEE- CS
  Methyltransf_9 285 eslkdfldpedpektveGypaPkravlvark 315
                     esl++fldp d++ktveGypaP ravlva+k
      EHU00059.1 291 ESLAEFLDPADSSKTVEGYPAPLRAVLVATK 321
                     *****************************87 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.2e-13   2.5e-10      21     163 ..     120     269 ..      73     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.2e-13
  Methyltransf_23  21 raggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.....................kfdlIvlrevl 92 
                       ag  vLd+GcG+G ++ + + +  + v+g+D++                 f  q++a+ +                       fd++ ++ vl
       EHU00059.1 120 LAGRTVLDVGCGSGyHMWRMIGAGAHLVVGIDPMQL---------------FLCQFEAVRKLlnddrrahllplgieqlpvlqAFDTVFSMGVL 198
                      45679*********667777766666899****832...............22222223222223446788888899999999*********** PP

  Methyltransf_23  93 ehvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpag.rhisff.sarslkelleeaGlevv 163
                      +h ++p   l q+++ l  gG l+l++   +   ++ l  ++ ++ a  r ++f+ sa++lk +le+ G+ +v
       EHU00059.1 199 YHRRSPLDHLMQLKNQLVSGGELVLETLVIEGDVNQVL--VPGERYAQmRNVYFIpSAEALKSWLEKCGFVDV 269
                      ***************************98887655554..3445555446666666**************887 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.7   5.4e+03     115     134 ..      20      44 ..      16      62 .. 0.68
   2 !   35.6   0.0   3.7e-12   7.5e-09       5     119 ..     123     233 ..     120     292 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
  Methyltransf_31 115 laelpakveeeskay.....evveg 134
                      l+ lpa+++e+++++     +++++
       EHU00059.1  20 LEVLPAQISEWQRENlhghfRDWYK 44 
                      5667788888888776666655554 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 3.7e-12
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkae.vvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                       +vlD+GCG+G+   ++    g +a+ vvGiD  +  + + ++ ++ l+ d ++++    ie+l+ l   + fD ++s +vl++  +p + l++
       EHU00059.1 123 RTVLDVGCGSGYHMWRMI---GAGAHlVVGIDPMQLFLCQFEAVRKLLNDDrRAHLLPLGIEQLPVL---QAFDTVFSMGVLYHRRSPLDHLMQ 210
                      58****************...7789999***977777777777666666668999999*******55...89********************** PP

  Methyltransf_31  97 iervlkpggilliedprllaelp 119
                      +++ l +gg+l++e+  ++ ++ 
       EHU00059.1 211 LKNQLVSGGELVLETLVIEGDVN 233
                      ***************99666665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.9   1.2e+04      60      90 ..      52      82 ..      27      87 .. 0.57
   2 !   30.2   0.0   2.7e-10   5.3e-07       1      80 [.     125     204 ..     125     219 .. 0.78
   3 ?   -3.0   0.0       6.5   1.3e+04      26      56 ..     271     277 ..     253     307 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
                     SSTTTEEEEEEEST.GGGSSHHHHHHHHHHHH CS
  Methyltransf_25 60 fedgsfDlvvssga.lhhlsdedlekalkeia 90
                     +e ++ Dl +s+ a    +sd+ +++ ++++ 
       EHU00059.1 52 LEPQRLDLLHSVSAdRDDISDR-HRQGIEKLL 82
                     3556666666655544444432.344444444 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2.7e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHH...HHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseeml...eaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsde 80 
                      vLd+GcG+G ++ ++  + g++ v+g+D+ + +l   ea+r+ ++ ++ +++++   +e+lp  +  fD v+s+g+l h   +
       EHU00059.1 125 VLDVGCGSGYHMWRMIGA-GAHLVVGIDPMQLFLcqfEAVRKLLN-DDRRAHLLPLGIEQLPVLQ-AFDTVFSMGVLYHRRSP 204
                      9**************999.69************944455556554.445*************876.9******9888874422 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.5
                      EEESSHHHHHHHHHHHHHTTTTEEEEESBCC CS
  Methyltransf_25  26 gvDiseemleaareraeeeglnvefvqgdae 56 
                       vD++                         +
       EHU00059.1 271 IVDFAV------------------------T 277
                      333322........................2 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.7e-10   5.4e-07       1      95 [.     126     222 ..     126     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.7e-10
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHH...HHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskeml...klakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      LdvGcG+G+++  +  +g + vvg+D+ + +l   +++++  ++++ +  ++   +e+lp+    fD v+s  vl h   p + l +++  L  
       EHU00059.1 126 LDVGCGSGYHMWRMIGAGaHLVVGIDPMQLFLcqfEAVRKLLNDDR-RAHLLPLGIEQLPVLQ-AFDTVFSMGVLYHRRSPLDHLMQLKNQLVS 217
                      8**************88899************77777777777777.5889*********988.9***************************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gG lv
       EHU00059.1 218 GGELV 222
                      **998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.3e-09   1.7e-05       1      99 []     126     221 ..     126     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 8.3e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsai...edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnir 90 
                      L++GcG+G  + ++  +  +++++ g+D+ + ++   e+ ++ l++ ++ +   + +e+l +l+     +fD+v++ +vl h + + + l +++
       EHU00059.1 126 LDVGCGSGYHMWRMIGA--GAHLVvGIDPMQLFLcqfEAVRKLLNDDRRAHLLPLGIEQLPVLQ-----AFDTVFSMGVLYHRRSPLDHLMQLK 212
                      8*******999999999..888888*********999999999999999999999999999874.....9************************ PP

  Methyltransf_12  91 klLkpgGrl 99 
                      + L+ gG l
       EHU00059.1 213 NQLVSGGEL 221
                      ******976 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.6e-08   9.1e-05      50     170 ..     109     229 ..     103     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.6e-08
                 HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--E.EEEEE...S-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---..--SEEEEES-GGGTSG CS
        CMAS  50 KldlileklelkpGmtlLdiGcGWGslvrraverydvk.vvglT...lSkeqaklakkrvdeldlerkvevklldyedlde..kvdrvvsvgafehvgk 142
                 K d++l  ++  +G t+Ld+GcG G+ + r++   +++ vvg+    l   q + ++k    l+ +r+++++ l+ e+l+    +d v s+g++ h   
  EHU00059.1 109 KWDRVLPHISSLAGRTVLDVGCGSGYHMWRMIGA-GAHlVVGIDpmqLFLCQFEAVRKL---LNDDRRAHLLPLGIEQLPVlqAFDTVFSMGVLYHR-- 201
                 7778888888889*******************99.665266764111334444444444...4446788888899999987669**********994.. PP

                 GGHHHHHHHHHHHS-TT-EEEEEEEEE- CS
        CMAS 143 enydtffkklkkllkedGllllhtitsl 170
                 ++  ++  +lk+ l ++G l+l+t+++ 
  EHU00059.1 202 RSPLDHLMQLKNQLVSGGELVLETLVIE 229
                 5556778889999999999999998765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     4e-06     0.008      73     121 ..     121     169 ..     112     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-06
                 TT-EEEEES-TTSHHHHHHHHHHCTTC.EEEEEESBHHHHH..HHHHHHHHC CS
        PCMT  73 kgarvLevGsGsGyltavlarlvgekg.rvvsierikelve..eakrnlkkl 121
                 +g  vL+vG+GsGy+   + r++g+ + +vv+i+ ++ +    ea r+l ++
  EHU00059.1 121 AGRTVLDVGCGSGYH---MWRMIGAGAhLVVGIDPMQLFLCqfEAVRKLLND 169
                 5789**********9...7899998664899**9987643312455555444 PP

>> DUF4568  Domain of unknown function (DUF4568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.7e-05      0.13     139     199 ..     128     190 ..     108     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
     DUF4568 139 ldlrswynrwricgeghlllkwq.qlq.alhqeeplaeekpaslkasllplslslltllqavl 199
                 ++  s+y+ wr+ g g +l+     +q  l q e + +  +   +a llpl ++ l +lqa  
  EHU00059.1 128 VGCGSGYHMWRMIGAGAHLVVGIdPMQlFLCQFEAVRKLLNDDRRAHLLPLGIEQLPVLQAFD 190
                 56789*********99888754414442477999**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2209.32
//
Query:       EHU00060.1  [L=242]
Description: tRNA methyltransferase, S-adenosyl-L-methionine-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-12   47.5   0.0    4.4e-12   46.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    4.9e-10   39.9   0.0      9e-10   39.1   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    5.4e-08   32.8   0.0      9e-08   32.1   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    1.3e-07   31.6   0.0    1.7e-07   31.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
      2e-07   31.7   0.0    3.3e-07   31.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.9e-06   27.3   0.0    2.7e-06   26.8   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
    0.00037   19.9   0.0    0.00063   19.1   0.0    1.3  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
    0.00038   20.1   0.0    0.00055   19.5   0.0    1.3  1  MTS              Methyltransferase small domain
    0.00086   18.8   0.0        1.1    8.7   0.0    2.2  2  CheR             CheR methyltransferase, SAM binding domain
     0.0026   17.2   0.0     0.0036   16.8   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.018   14.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.036   14.2   0.1      0.065   13.3   0.1    1.6  1  FtsJ             FtsJ-like methyltransferase
      0.057   13.4   0.0      0.091   12.7   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
      0.061   13.0   0.0      0.099   12.3   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
       0.14   11.7   0.0       0.23   11.0   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   3.6e-15   4.4e-12       1      97 []      60     158 ..      60     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.6e-15
                      EEEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeia 90 
                      v dlGc  G  tl + +++  + +++++vD s++m+e++r+++++ ++   v++v++d+ d+  e+    lvv++++l++l+++ + ++l +i+
       EHU00060.1  60 VFDLGCSLGAATLSVRRNIhvPGCQIIAVDNSPAMVERCRRHIDAFRAdtPVTVVEADICDIAIEN--ASLVVLNFTLQFLEPPARLTLLTKIW 151
                      78****************97646********************9955556************9987..789999999***************** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      + L+pgG
       EHU00060.1 152 QGLNPGG 158
                      ******9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   7.5e-13     9e-10       2      96 .]      62     162 ..      61     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 7.5e-13
                      EET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRv 87 
                      d+Gc  G+ +  + ++     +++++vD s++m++++++++   +    v++v+ad+ ++ +e+    lvv++++l+++  + +  +l +i++ 
       EHU00060.1  62 DLGCSLGAATLSVRRNIhvpgCQIIAVDNSPAMVERCRRHIDAFRAdtPVTVVEADICDIAIEN--ASLVVLNFTLQFLepPARLTLLTKIWQG 153
                      9*************7777889********************999889999*********88877..669**********77788899******* PP

                      EEEEEEEEE CS
  Methyltransf_11  88 LkpgGllvi 96 
                      L pgG lv+
       EHU00060.1 154 LNPGGALVL 162
                      *****9985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   7.5e-11     9e-08       4     111 ..      57     164 ..      55     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 7.5e-11
  Methyltransf_31   4 glrvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevl..naladpdki 93 
                      + +v DlGC  G+ t+   +    p+++++ +D+s+ ++e++r + +    d  v++ ++di ++   +e  +  l++ n +l     ++    
       EHU00060.1  57 NSQVFDLGCSLGAATLSVRRnIHVPGCQIIAVDNSPAMVERCRRHIDAFRADtPVTVVEADICDIA--IE--NASLVVLNFTLqfLEPPARLTL 146
                      789****************976678***********************999999**********88..55..5789999988855555666667 PP

  Methyltransf_31  94 leeiervlkpggillied 111
                      l +i + l+pgg+l++++
       EHU00060.1 147 LTKIWQGLNPGGALVLSE 164
                      7799999******99875 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.4e-10   1.7e-07      21     130 ..      55     173 ..       3     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.4e-10
  Methyltransf_23  21 raggrvLdiGcGtGillevlren....gfsvtgvDlspeaveiae....kakkaqkdqfdeqeaaepqg..............kfdlIvlrevl 92 
                      ++++ v d+Gc  G  + + r+n    g+++++vD sp++ve+ +         +   +                           l+vl+++l
       EHU00060.1  55 QPNSQVFDLGCSLGAATLSVRRNihvpGCQIIAVDNSPAMVERCRrhidA----FRADT---------PvtvveadicdiaieNASLVVLNFTL 135
                      67789*********999999998677789*************98744442....22222.........0222233355566669********** PP

  Methyltransf_23  93 ehvpdpp..ellrqiatllkpgGylllseplaslkedrll 130
                        +++p+   ll++i++ l+pgG l+lse  +   edr++
       EHU00060.1 136 QFLEPPArlTLLTKIWQGLNPGGALVLSEKFS--FEDRDV 173
                      *****995568*****************9532..333333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.7e-10   3.3e-07       2      99 .]      62     160 ..      61     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.7e-10
  Methyltransf_12   2 eiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdir.evldnirk 91 
                      ++Gc  G+ +  +++++  p++++++vD sp+++e+ ++++ + +++    v++ + d+ d + +    lvv++++l+ l ++ r  +l +i +
       EHU00060.1  62 DLGCSLGAATLSVRRNIhvPGCQIIAVDNSPAMVERCRRHIDAFRADT--PVTVVEADICDIAIE-NASLVVLNFTLQFLePPARlTLLTKIWQ 152
                      9****************************************9988754..555555555555444.99************6333359999**** PP

  Methyltransf_12  92 lLkpgGrl 99 
                       L+pgG l
       EHU00060.1 153 GLNPGGAL 160
                      ******75 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.3e-09   2.7e-06      54     172 ..      48     170 ..      17     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.3e-09
                     HHHSS-GGG-SEEEEET-TTSHHHHHHHH..H-TT-EEEEEE.-HHHHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHH CS
  Methyltransf_2  54 vleafdleglkslvDvGGGtGalakaivs..ayPtikvivfD.lpeVveaAkehl.sageeervefvgGdffkdslPeaDaillkrvlhDwsdek 144
                     +l++  +++ ++++D+G   Ga+   + +  + P++++i  D  p  ve+ ++h+  + +++ v++v+ d+ + ++ +a +++l+  l   +  +
      EHU00060.1  48 MLAERFVQPNSQVFDLGCSLGAATLSVRRniHVPGCQIIAVDnSPAMVERCRRHIdAFRADTPVTVVEADICDIAIENASLVVLNFTLQFLEPPA 142
                     455555778899***********9999873368******9994599*********88899*********************************** PP

                     HHHHHHHHHHH--TT-EEEEEE----TT CS
  Methyltransf_2 145 cvklLkrvkkalpagGkvivveavlgad 172
                       +lL ++ + l++gG++++ e    +d
      EHU00060.1 143 RLTLLTKIWQGLNPGGALVLSEKFSFED 170
                     ********************99875544 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.3e-07   0.00063      15     137 ..      38     161 ..      25     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.3e-07
       Rsm22  15 tyavlrrvLdelaervpdflPk.slldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisy 111
                  y+ + +++  laer  +  P+ +++d+g   g+a++ +    +    +++ +d s ++ e  +  +++  +   ++  +  i   + +e+a Lv++ +
  EHU00060.1  38 GYSNIISMIGMLAERFVQ--PNsQVFDLGCSLGAATLSVRRNIHvPGCQIIAVDNSPAMVERCRRHIDAFRADTPVTVVEADI-CDIAIENASLVVLNF 133
                 566777777777777655..541589*******999988765555999*********99876655444444444443333333.25678899******* PP

       Rsm22 112 vLleledesreklvknlWakask..ilv 137
                 +L+ le+  r +l+ ++W+ ++   +lv
  EHU00060.1 134 TLQFLEPPARLTLLTKIWQGLNPggALV 161
                 *******************987544555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.6e-07   0.00055      22     163 ..      48     188 ..      45     194 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.6e-07
                 HHHHHCHCCTCSEEEEET-TTSHHHHHHHH..HTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHH CS
         MTS  22 lLletlpkelsgkvlDlGcGaGvlgaalak..espeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagkatela 116
                 +L+e + +  + +v DlGc  G+ ++++ +  + p  ++ +vd++ + +e +++ + a +++  v+vv+ d+ + +  ++  l+v N  f  +   e  
  EHU00060.1  48 MLAERFVQ-PNSQVFDLGCSLGAATLSVRRniHVPGCQIIAVDNSPAMVERCRRHIDAFRADtpVTVVEADICDIAI-ENASLVVLN--FTLQFL-EPP 141
                 56677777.6678******888755555541178999**********************999999*******99888.899999999..443333.456 PP

                 HHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEES CS
         MTS 117 vaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktk 163
                 +  +l+++  + L++gG L++  +   + +++ e lf+ ++  ++ +
  EHU00060.1 142 ARLTLLTKIWQGLNPGGALVLSEKFSFEDRDVGELLFNMHHDFKRAN 188
                 67777777777777777776655544444444555555555555555 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00093       1.1      33      83 ..      58     101 ..      40     110 .. 0.75
   2 !    8.0   0.0    0.0015       1.8     138     174 ..     127     163 ..     111     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00093
                 EEEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHHHT CS
        CheR  33 vriwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAkag 83 
                  +++  gcs G  + s+        ++ +   ++i+A+D++ +++e++++ 
  EHU00060.1  58 SQVFDLGCSLGAATLSVR-------RNIHVPGCQIIAVDNSPAMVERCRRH 101
                 567777787775444432.......3333347****************975 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0015
                 EEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE- CS
        CheR 138 DvifcrnvliYfdeetqekvlerfaeklkpgglLllG 174
                  ++++   l +++++++ ++l ++++ l+pgg L+l 
  EHU00060.1 127 SLVVLNFTLQFLEPPARLTLLTKIWQGLNPGGALVLS 163
                 5677777899************************984 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-06    0.0036     156     259 ..      51     163 ..      44     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
        PrmA 156 eklvkegeevlDvGt..GSGiLaiaa.akLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadvivaNILaevl.....ielae 244
                 e++v+++++v+D+G+  G++ L++     +   +++avD  +  v+  ++ ++  + ++ ++v +++++ +   e+a ++v N   + l     + l+ 
  EHU00060.1  51 ERFVQPNSQVFDLGCslGAATLSVRRnIHVPGCQIIAVDNSPAMVERCRRHIDAFRADTPVTV-VEADICDiaIENASLVVLNFTLQFLepparLTLLT 148
                 899************8899999997526788899************************99977.778887555689*******9998884443447999 PP

        PrmA 245 dikklvkeggllilS 259
                 +i++ +++gg l+lS
  EHU00060.1 149 KIWQGLNPGGALVLS 163
                 ************999 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.5e-05     0.018      60     132 ..      44     117 ..      19     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHC.TTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES- CS
        PCMT  60 hmvalalellelkkgarvLevGsGsGyltavlarlvg.ekgrvvsierikelveeakrnlkkldle.nvivvvgD 132
                 +m++++ e   +++ ++v ++G+  G  t  + r ++ + +++++++ ++ +ve+ +r++ +  ++  v+vv++D
  EHU00060.1  44 SMIGMLAER-FVQPNSQVFDLGCSLGAATLSVRRNIHvPGCQIIAVDNSPAMVERCRRHIDAFRADtPVTVVEAD 117
                 333333332.389****************8888777615669*******************99888678888888 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.5e-05     0.065      18      79 ..      53     127 ..      40     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.5e-05
                 -S-TT-EEEECT-TTSHHHHHHCCT.T..-SEEEEEESSSS..........HHH...TTEEEECS-CCCSSHHHHH CS
        FtsJ  18 lfkpgktvvDlgaaPGgwsqvllqrlga.kgkvvavDlqpm..........apl...pgvttiqgditdpetieki 79 
                 +++p+ +v+Dlg++ G+ +  + ++++  +++++avD  p           a +     vt++++di d + +++ 
  EHU00060.1  53 FVQPNSQVFDLGCSLGAATLSVRRNIHVpGCQIIAVDNSPAmvercrrhidA-FradTPVTVVEADICDIAIENAS 127
                 367999*******************97778********88879877666541.22446777778888777766654 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-05     0.091      10      73 ..      52     117 ..      48     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-05
  Methyltransf_18  10 slvekgsrvaDiGtDHgylpiylvkegkak..kviasDinegplekakeniekagledkievrlsd 73 
                      ++v+++s+v D G+  g  ++ + ++ +++  ++ia+D ++  +e+++++i+  + ++ ++v+ +d
       EHU00060.1  52 RFVQPNSQVFDLGCSLGAATLSVRRNIHVPgcQIIAVDNSPAMVERCRRHIDAFRADTPVTVVEAD 117
                      689*************999999999888864479*******************9999888887665 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.3e-05     0.099      75     121 ..      81     127 ..      45     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS- CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkege 121
                 +  +++++D+ +++v+++r+   + + +  +++++ad++++  ++++
  EHU00060.1  81 PGCQIIAVDNSPAMVERCRRHIDAFRADTPVTVVEADICDIAIENAS 127
                 5678************************************9955544 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.23       8      92 ..      51     142 ..      47     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
        MetW   8 aelikpgsrvldlGcGdGellellkeekqvdgrGl...eldeegvaecvakGlsviqgd.....ldkdlenfedksfdyvvlsqtlqatrnpk 92 
                  ++++p+s+v+dlGc  G     ++ + +v g  +   +++ + v +c  + +   + d     ++ d+   + ++  +vvl+ tlq +  p+
  EHU00060.1  51 ERFVQPNSQVFDLGCSLGAATLSVRRNIHVPGCQIiavDNSPAMVERC-RRHIDAFRADtpvtvVEADICDIAIENASLVVLNFTLQFLEPPA 142
                 589*************99876666666666664431114455555555.67777777763333346666667777777888888888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1862.31
//
Query:       EHU00061.1  [L=131]
Description: hypothetical protein CKS_1830 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-24   84.5   5.3    6.2e-24   84.4   5.3    1.0  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   5.3   3.4e-28   6.2e-24       1     128 [.       3     118 ..       3     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 3.4e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHTT--SS---S......SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHHH CS
       MAPEG   1 lalyagllallllllslivvkerrkakiaigegkanapralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvvaRvlhal 99 
                 +aly+++ all + ++l+vv+ rr++ +a+g+g+       +     +l  air hgN +E++pl+ll+++++e++ga+ ++++l +++f+++Rvlha 
  EHU00061.1   3 SALYVVIGALLIMKFTLNVVRLRRQHHVAYGDGG-------HH----DLHMAIRIHGNAIETIPLGLLLLIVLEMNGANIWMVHLTGILFFIGRVLHAQ 90 
                 589*******************************.......66....8*************************************************** PP

                 HHHH-..SGGGHHHHHHHHHHHHHHHHHH CS
       MAPEG 100 gyiaggpppgRslgflltllvllvlslla 128
                 g+  +     R++g++ltl+ l ++++ +
  EHU00061.1  91 GLRND-VMSKRKYGMMLTLFSLSGMVIFN 118
                 ****9.999*************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1034.12
//
Query:       EHU00062.1  [L=273]
Description: uncharacterized DUF72 family proteind [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-45  155.6   0.3    2.7e-45  155.2   0.3    1.0  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.3   1.5e-49   2.7e-45      10     214 ..      22     248 ..      19     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 1.5e-49
                 HHHHHCCT-SEEEE-HHCCSSS-HHHHHHHHCTS-TT-EEEEE--CCCCCS...G-SCHHHHHHHHHH.CHHHCT-EEEEEEE--TT--S.HHHHHHHH CS
       DUF72  10 rLeyYarhfntVEinstFYalpspetvakwaaqtpedFrFavKapraither..nedaeealerflesalepLgeklgpllfQlppsfkfdeenlerLe 106
                  L+ Yar f+tVE+n+t Yalp+petv +w++ t+++FrF++K+p++i+h++  + +++++l++f++ +++pL++++g +++Qlp+sf  ++++l++L 
  EHU00062.1  22 TLADYARYFQTVEGNTTLYALPDPETVLRWRDMTHDQFRFCFKFPSTISHQAalQ-NTDDLLTDFFR-LMHPLADRIGQYWLQLPASF--SPAQLSDLW 116
                 79************************************************85333.79*********.5*******************..9889***** PP

                 HHTTTS-..S.EEEE--BGGGH......H.HHHHHHHTT-E.EEEE.................--SSC--------SSTEEEEEE--S....HHTTB-- CS
       DUF72 107 aflaalp..l.lavEvRhrswf......e.llellrehgva.vvld.................epkkpklpledvttadfvyvRlhgr....eeryayr 173
                 +fl+ lp    + vEvRh+++f      + l++ l ++gv+ vvld                 +++kp++p++   t++ +++R++g     e      
  EHU00062.1 117 RFLDSLPasFsYGVEVRHAAFFakgeaeRaLNRGLLQRGVNrVVLDsrpvhastsqsaaalhaRQQKPRVPPHALLTGPRPMIRFVGSdsleE------ 209
                 ********966**********999*99867***********999999************9976559*********************965442...... PP

                 --HHHHHHHHHHHHHHHTCSSEEEEEE-SBCCCHHHHHHHH CS
       DUF72 174 Yseeelaewaerikawaaegrevyvffnndaegqaplnara 214
                  s + ++ w+ ++++w+ +  e+ vf+++++ gq    ++a
  EHU00062.1 210 -SLPLFRIWLTKLAEWHTQ-SEPLVFIHTPDMGQVFPLVQA 248
                 .45899***********97.799*******99987766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2162.52
//
Query:       EHU00063.1  [L=593]
Description: aspartyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-107  357.5   0.0   6.6e-107  357.2   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    7.8e-30  103.0   0.1    1.5e-29  102.1   0.1    1.5  1  GAD              GAD domain
    1.8e-15   56.7   0.0    3.5e-15   55.8   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00053   19.5   0.1       0.48    9.8   0.0    2.5  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
      0.039   13.9   0.0       0.05   13.6   0.0    1.4  1  tRNA-synt_2b     tRNA synthetase class II core domain (G, H, 
       0.11   12.5   0.0       0.33   11.0   0.0    1.7  1  SUKH-4           SUKH-4 immunity protein


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.2   0.0  2.2e-110  6.6e-107       1     314 []     117     558 ..     117     558 .. 0.99

  Alignments for each domain:
  == domain 1  score: 357.2 bits;  conditional E-value: 2.2e-110
                  .CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                  see rl++ryldlr++++ + l++r+++t+ vr++++++gf++ietP+L+k+ t+egar+++v+sr+++++f+aL+qspql+++ll+++g+dr++qi 
   EHU00063.1 117 SEEARLTYRYLDLRRPEMAQRLKTRAKITSFVRRFMDNEGFLDIETPMLTKA-TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIV 213
                  5899************************************************.********************************************* PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS-SS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklneigkdldkaderalv 196
                  ++FR+Ed+r+dr++ EFtqi++e+sf++ e++ + +e+li++l+ ++ +++             dl   f+++t++ea+++      ++dk+d+r  +
   EHU00063.1 214 KCFRDEDLRADRQP-EFTQIDVETSFMTAEQVREKMERLIRELWMDI-KGV-------------DLG-AFPQMTFAEAMHR-----FGSDKPDLRNPM 290
                  **************.********************************.888.............777.4************.....9*********** PP

                  H................................................................................................. CS
                  x................................................................................................. RF
  tRNA-synt_2 197 k................................................................................................. 197
                  +                                                                                                 
   EHU00063.1 291 Elvdvgdllksvefqvfagpandpkarvaalrvpggaaltrkqideygkfveiygakglawmkinerangfegvqspvakflsadiveailnrtgaqd 388
                  ************************************************************************************************** PP

                  .................................HS--SEEEEEEEB...........GGGSTTCBBBSTTS........TTBBSEEEEEETTEEEEEE CS
                  .................................xxxxxxxxxxxxx...........xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 198 .................................keknepvfvtdfP...........aelkpFyarkeedd........kkltesyDllingvElvgG 243
                                                   ++ + p++v+dfP           a+++pF+++k+ +         ++++++yD++ing+E++gG
   EHU00063.1 389 gdliffgadrakvvadalgalrlkvgrdlritdENAWAPLWVIDFPmfeedeegglaAMHHPFTSPKDMTAealasdpvQAVANAYDMVINGYEVGGG 486
                  ********************************************************************9999************************** PP

                  EEB--SHHHHHHHHHHCCHH.SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XXX CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 244 slRiedpeeleeklkskgld.eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPklt 314
                  s+Ri++++++++++   g++ ee++ kf+++l+al+yG+pph+Gl++GldRl+mll+g+++IrdviaFPk+t
   EHU00063.1 487 SVRIHNSKMQQTVFSILGITeEEQRLKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTT 558
                  ********************999999********************************************86 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.1     5e-33   1.5e-29       1      95 []     307     406 ..     307     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 5e-33
                 HHHHHHS.TEEEEEEEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESS.....GGEETTTCCCS-HHHHHHHHHHCT--TTEEEEEEEEEHHHHHH CS
         GAD   1 fsealks.ggsvkalrvpggaaklsrkeideleefakelgakglawikveg.....egltgpiakflteeevkklleavgaeegDillfvAdkkktvnk 93 
                 f+ ++++ + +v+alrvpgg a l+rk+ide+++f++++gakglaw+k+++     eg+++p+akfl+++ v+ +l+++ga++gD+++f+Ad +k+v++
  EHU00063.1 307 FAGPANDpKARVAALRVPGG-AALTRKQIDEYGKFVEIYGAKGLAWMKINErangfEGVQSPVAKFLSADIVEAILNRTGAQDGDLIFFGADRAKVVAD 404
                 6778889999*********8.9****************************************************************************9 PP

                 HH CS
         GAD  94 al 95 
                 al
  EHU00063.1 405 AL 406
                 97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.2e-18   3.5e-15       1      76 []      18     102 ..      18     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1.2e-18
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS.........SEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg.........elelkveeiell 76 
                      Vt++G+v ++  r+ g++ifid rD++g+ qv+++   +ea++la++l+++ ++++tG+v++r+++         ++e+ +  ++++
       EHU00063.1  18 VTLCGWVNRR--RDLGSLIFIDMRDREGIAQVFFDAdhQEAFQLASELRNEFCIQITGTVRARDEKnrnsdmatgDVEVFAHALTII 102
                      89********..***************************************************666668888888999999888875 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0011       3.4     103     129 ..     208     234 ..     192     263 .. 0.82
   2 !    9.8   0.0   0.00016      0.48     210     235 ..     529     552 ..     495     556 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
                   EEEEEEEEEBSST-SSSB-SEEEEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveg 129
                   ++  i ++fR +++ a +++eF+q++ 
    EHU00063.1 208 RYYQIVKCFRDEDLRADRQPEFTQIDV 234
                   677889******************985 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00016
                   EEEEEEEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 210 sgfafGlGveRlamlkygieDiRelv 235
                    g+af  G++Rl+ml +g ++iR+++
    EHU00063.1 529 AGLAF--GLDRLTMLLTGTDNIRDVI 552
                   45555..67**************986 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-05      0.05      38      94 ..     208     259 ..     207     542 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
                   EEEEEEEEEBTTTSTBCTTTB-SEEEEEEEE.EEESGGGHHHHHHHHHHHHHHHHHHT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  38 klyqiqtkyRdEksdsrGLlRvreFhqkdgy.vfhaeaslddslrdlikaisriferl 94 
                   ++yqi  ++RdE        R+ eF+q d + +f ++++   + ++++++i +++ ++
    EHU00063.1 208 RYYQIVKCFRDEDL-RAD--RQPEFTQIDVEtSFMTAEQ---VREKMERLIRELWMDI 259
                   79**********97.335..999******9825666665...5555566666666555 PP

>> SUKH-4  SUKH-4 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.33      69     142 ..      49     128 ..      33     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
      SUKH-4  69 lpaeaggllvLGalesaslvldpgtGaVlavdleeeerapVNsdlsaFveclwrlerevpldadlaeeageae.......e 142
                 ++a++++   L++   +++++ + tG+V a+d+++ +      d++ F+++l   +r+ pl  d +++  e++       +
  EHU00063.1  49 FDADHQEAFQLASELRNEFCI-QITGTVRARDEKNRNSDMATGDVEVFAHALTIINRADPLPLDSNQTNSEEArltyrylD 128
                 6788888899999999****9.99********************************9988877777777765555544442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3925.90
//
Query:       EHU00064.1  [L=143]
Description: dATP pyrophosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-18   66.2   0.8    3.1e-18   66.1   0.8    1.0  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
      0.011   15.7   0.7      0.016   15.2   0.7    1.3  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.8   3.5e-22   3.1e-18       2     130 ..       5     141 ..       4     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.5e-22
                 EEEEEEEEEEETT.SEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEE........EEEEEEEEE. CS
       NUDIX   2 lrravgvvllnek.gevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygd........eheilyvfl. 89 
                 ++++v vv++ ++ g+vL+++r+ ++ + W+ + G +e gEtp++AA RE+ EE+ ++  ++  +l+++h+   ++ +           +h   ++f+ 
  EHU00064.1   5 HPVSVLVVIFAQDtGRVLMLQRR-DDASFWQSVTGSLEVGETPRQAAEREVSEELSINIaDEKLVLEDCHKQIEFEIFPHYrhryapgiTHNREHWFRl 102
                 7899****88888366*******.77777***************************9777888788877777766544444577799998888899995 PP

                 .EEECSGCSSTSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  90 .eevegelepndenevsevrwvpleellkeklaaesrkllpw 130
                   ++e +l +    e+ ++rw++++++++ +  +++r+ +++
  EHU00064.1 103 aLPAERDLLL---TEHLAARWLEPAAAAALTKSWSNRQAIEE 141
                 4444444444...599999********777777777777765 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   1.7e-06     0.016       2      98 ..      11     129 ..      10     141 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
                 EEEEEEC.TEEE.EEE--TTSSSTT-EE-SEEE-TTS-HHHHHH...HHHHS-EEE......EEEE......EEEEEEETTEEEEEE.EEEE....... CS
     NUDIX_4   2 vllirdd.grvl.lekRpekgllggLwefPggeeegeeleeala...reelgieve......elep......gtvkHvftHfrltlt.vylv....... 75 
                 v+++++d grvl l++R +   ++  ++  +    ge++++a+     eel i++       e         ++   +f H+r ++   ++        
  EHU00064.1  11 VVIFAQDtGRVLmLQRRDDASFWQSVTGSLE---VGETPRQAAErevSEELSINIAdeklvlE--DchkqieFE---IFPHYRHRYApGITHnrehwfr 101
                 67888888**997788888888888888775...44444443322234566663333344331..233222244...8888888877665446666663 PP

                 .EEE.S..---.......EEEEEEGGGGGGS CS
     NUDIX_4  76 .rveegeeapa.......elrwvtpeeleey 98 
                  +++   ++ +       + rw++p++ +++
  EHU00064.1 102 lALP---AERDllltehlAARWLEPAAAAAL 129
                 3222...111244556667777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1092.97
//
Query:       EHU00065.1  [L=63]
Description: hypothetical protein CKS_1826 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 522.85
//
Query:       EHU00066.1  [L=247]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-94  313.5   0.0    9.6e-94  313.3   0.0    1.0  1  Transcrip_reg  Transcriptional regulator


Domain annotation for each model (and alignments):
>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.3   0.0   5.4e-98   9.6e-94       1     239 [.       5     236 ..       5     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: 313.3 bits;  conditional E-value: 5.4e-98
                    .XCHHCCCCCCHCCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHHHHHHHHHTT--HHHHHHHHHHCCSTS.TS.--EEEEEEEEETTTEEEE CS
  Transcrip_reg   1 skWsnikhkKaandakkgklftklakeItvaakeeggpDpesNprLraaiekakkanvpkdnIeraIkkgagekseganyeevtyegygpggvavi 96 
                    skW+n+kh+Kaa+dak+gk+ftk+++e++ aak  gg+Dp sNprLraa++ka ++n+++d+++raI++g g+ ++++n+e+++yegygpgg+a++
     EHU00066.1   5 SKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKL-GGGDPGSNPRLRAAMDKALSNNMTRDTMNRAIARGVGG-EDDSNMETIIYEGYGPGGSAIM 98 
                    8********************************6.999**********************************6.58899***************** PP

                    EEEEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHHTESEEEEETTTC.EEEEEEGGGHHHHHHHHHHT CS
  Transcrip_reg  97 vealTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaieaGaeDveedeeeevievitepedlaavkkaLeea 192
                    +e+l+dn+nrt+ evr++f+k ggnlg++gsvs+lF++kgvi++ ++  ++ded+++eaa+eaGaeDv    +++ i v+t+ e++ +v++aLe+a
     EHU00066.1  99 IECLSDNRNRTVGEVRHAFTKTGGNLGTDGSVSYLFSKKGVISY-AP--GQDEDAVMEAALEAGAEDVVA-YDDGAIDVFTAWEEMGTVRDALEAA 190
                    ********************************************.65..79******************8.44789*******************9 PP

                    TT---SEEEEEEEESS-EE--HHHHHHHHHHHHHHHTSTTEEEEEES CS
  Transcrip_reg 193 gglevesaeleyipkeeveldeeeaekleklidaLeeldDVqnvytN 239
                     gl+ ++ae+ +ip+++ e+d e+a kl +lid+Le++dDVq+vy+N
     EHU00066.1 191 -GLKADTAEVAMIPSTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHN 236
                    .567******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2023.56
//
Query:       EHU00067.1  [L=175]
Description: component of RuvABC resolvasome, endonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-65  218.6   0.4    3.7e-65  218.3   0.4    1.1  1  RuvC      Crossover junction endodeoxyribonuclease RuvC
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.025   14.6   0.0    1.7  1  DUF3882   Lactococcus phage M3 protein


Domain annotation for each model (and alignments):
>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.4   4.2e-69   3.7e-65       1     148 []       4     150 ..       4     150 .. 1.00

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 4.2e-69
                 EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S-HHHHHHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEE CS
        RuvC   1 ilGiDPGsrktGygvieeagrklslltsgvirtksdplserlkavfdaveelldayepdalaieqvffaknvdsvlklaqarGvvilaalereisvaey 99 
                 ilGiDPGsr+tGygvi+++gr+l++l+sg+irt++++l +rlk ++++v e+++++ pd +aieqvf+akn+ds+lkl+qarG++i+aa+++ ++v+ey
  EHU00067.1   4 ILGIDPGSRVTGYGVIRQTGRQLTYLGSGCIRTNTTELPARLKLIYAGVCEIITQFSPDFFAIEQVFMAKNADSALKLGQARGAAIVAAVNHDLPVFEY 102
                 8************************************************************************************************** PP

                 EHHHHHHHHTSSTT--HHHHHHHHHHHTT----SS.S-THHHHHHHHHH CS
        RuvC 100 tpsqvkkavtGigkaekeqvqalvkrlLklkakpkpadaaDalavaith 148
                 +++qvk++v+G+g aek+qvq++vk lLkl a p+ adaaDala+aith
  EHU00067.1 103 AARQVKQTVVGTGGAEKSQVQHMVKSLLKLAASPQ-ADAADALAIAITH 150
                 ***********************************.************9 PP

>> DUF3882  Lactococcus phage M3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.8e-06     0.025      17      97 ..      12      93 ..       1     152 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-06
                --EEEE.EEETTE..EEEEEE----TTS-HHHHHHHHHHHHHHHHHHTT-TT-EEEEE-----SSHHHHHHHHHHHHHHHHHHB CS
     DUF3882 17 egtGya.frkdne..vvvGsikaynkkkdalerakdivdaikevieeydlkdyflaieepiitrkrkgsisliranGsflGvid 97
                  tGy  +r++++   ++Gs    ++  +   r k+i  ++ e+i ++     f+aie+  ++++   ++ l +a G  + +  
  EHU00067.1 12 RVTGYGvIRQTGRqlTYLGSGCIRTNTTELPARLKLIYAGVCEIITQFS--PDFFAIEQVFMAKNADSALKLGQARGAAIVAAV 93
                34888625776652358899866777777778***************97..45789********************98776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1356.27
//
Query:       EHU00068.1  [L=204]
Description: component of RuvABC resolvasome, regulatory subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-19   68.7   0.1    2.1e-18   66.2   0.0    2.2  2  RuvA_N          RuvA N terminal domain
    3.4e-17   62.8   1.0    6.5e-17   61.9   0.4    1.8  2  HHH_5           Helix-hairpin-helix domain
    8.2e-15   55.0   0.3    8.2e-15   55.0   0.3    2.0  2  RuvA_C          RuvA, C-terminal domain
    1.5e-09   37.2   1.1     0.0017   18.1   0.2    2.6  2  HHH             Helix-hairpin-helix motif
     0.0005   20.3   0.1      0.071   13.5   0.0    2.6  2  IMS_HHH         IMS family HHH motif
     0.0017   18.4   0.0       0.66   10.1   0.0    2.7  3  HHH_2           Helix-hairpin-helix motif
     0.0023   18.1   0.1        0.3   11.4   0.1    2.4  2  HHH_3           Helix-hairpin-helix motif
     0.0035   17.7   0.0       0.44   11.0   0.0    2.5  2  HHH_8           Helix-hairpin-helix domain
      0.009   16.3   0.0       0.71   10.2   0.0    2.5  2  Transposase_20  Transposase IS116/IS110/IS902 family
  ------ inclusion threshold ------
      0.055   13.7   0.2       0.25   11.5   0.1    2.0  2  FeS_assembly_P  Iron-sulfur cluster assembly protein
      0.076   13.6   0.2        7.3    7.3   0.0    2.3  2  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
       0.15   12.0   0.0        1.9    8.4   0.0    2.6  3  DUF3173         Domain of unknown function (DUF3173)


Domain annotation for each model (and alignments):
>> RuvA_N  RuvA N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.4e-21   2.1e-18       1      60 []       1      62 [.       1      62 [. 0.97
   2 ?   -0.3   0.0      0.77   1.1e+03      19      31 ..      76      88 ..      72     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.4e-21
                -EEEEEEEEEEESSCEEEEEETTEEEEEEE-HHHHCC..-TTSEEEEEEEEEEETTEEEEEE CS
      RuvA_N  1 MIaylkGkvvekepdsivvevggvGYevfvplstlss..kegeevklythlivrEdalsLYG 60
                MI++l+G+++ek+p  +++e++gvGYev++p++++++  + + e+ ++t+++vrEda+ L+G
  EHU00068.1  1 MIGRLRGTILEKQPPLVLLEAHGVGYEVHMPMTCFYElpELNHEAIIFTQFVVREDAQLLFG 62
                **************************************98888988***************9 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.77
                EEETTEEEEEEE- CS
      RuvA_N 19 vevggvGYevfvp 31
                + v+gvG ++ + 
  EHU00068.1 76 IKVNGVGPKLALA 88
                8899999777665 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.4   4.4e-20   6.5e-17       1      57 []      72     130 ..      72     130 .. 0.85
   2 ?   -2.7   0.0       6.6   9.9e+03      42      52 ..     172     182 ..     160     187 .. 0.51

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 4.4e-20
                 -HHHHTSTT--HHHHHHHHTTT--SHHHHHHS....-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesvedlaaa....dveeLakipGiGkktAeriilelkd 57 
                 f+eL++v+G+Gpk+Ala+ls+   s ++++ a    ++++L k+pG+GkktAer++ e kd
  EHU00068.1  72 FRELIKVNGVGPKLALAILSG--MSAQQFVTAvekeEIAALVKLPGVGKKTAERLVVEMKD 130
                 9********************..77776655522227788******************987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.6
                 TS-HHHHHHHH CS
       HHH_5  42 GiGkktAerii 52 
                 G  +  A r+i
  EHU00068.1 172 GYKPQEASRMI 182
                 44444455555 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.8   4.3e+03      20      30 ..      95     105 ..      94     113 .. 0.62
   2 !   55.0   0.3   5.5e-18   8.2e-15       2      45 ..     160     202 ..     159     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
                 HHHHHHHHHC- CS
      RuvA_C  20 aekAvakvlan 30 
                 a++ v++v+++
  EHU00068.1  95 AQQFVTAVEKE 105
                 78888888642 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 5.5e-18
                 HHHHHHHHHHHCTS-HHHHHHHHHHHHC-TTS-HHHHHHHHHCC CS
      RuvA_C   2 aledaveALlaLGYkekeaekAvakvlanpgasveelIraALkl 45 
                 a ++av+AL++LGYk++ea ++++kv   p+a+ e+lIr+AL++
  EHU00068.1 160 AEAEAVAALVSLGYKPQEASRMISKVG-RPDADCETLIREALRA 202
                 779***********************9.**************96 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-06    0.0032      12      29 ..      74      91 ..      66      92 .. 0.91
   2 !   18.1   0.2   1.2e-06    0.0017      13      27 ..     110     124 ..     107     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.1e-06
                HHHTSTT-SHHHHHHHHH CS
         HHH 12 eLlalPGVGpktAeaIls 29
                eL ++ GVGpk A aIls
  EHU00068.1 74 ELIKVNGVGPKLALAILS 91
                9***************98 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.2e-06
                 HHTSTT-SHHHHHHH CS
         HHH  13 LlalPGVGpktAeaI 27 
                 L++lPGVG+ktAe+ 
  EHU00068.1 110 LVKLPGVGKKTAERL 124
                 99**********985 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.053        80      13      24 ..      75      86 ..      73      91 .. 0.87
   2 !   13.5   0.0   4.8e-05     0.071      14      27 ..     111     124 ..     106     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.053
     IMS_HHH 13 itkipGiGgklg 24
                + k+ G+G+kl+
  EHU00068.1 75 LIKVNGVGPKLA 86
                6799******97 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.8e-05
     IMS_HHH  14 tkipGiGgklgekL 27 
                  k+pG+G+k++e+L
  EHU00068.1 111 VKLPGVGKKTAERL 124
                 69***********8 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.7   8.6e+03      36      47 ..      17      28 ..      10      40 .. 0.71
   2 !   10.1   0.0   0.00044      0.66      31      53 ..      69      91 ..      65     102 .. 0.87
   3 ?    5.6   0.0     0.011        17      30      51 ..     103     124 ..      95     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.7
       HHH_2 36 eLlevddiGeei 47
                 Lle +++G e+
  EHU00068.1 17 VLLEAHGVGYEV 28
                688889999887 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00044
       HHH_2 31 kasleeLlevddiGeeiAqsive 53
                +a + eL++v+++G++ A +i +
  EHU00068.1 69 RALFRELIKVNGVGPKLALAILS 91
                68899*************99976 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.011
       HHH_2  30 kkasleeLlevddiGeeiAqsi 51 
                 +k ++  L++++++G+++A+  
  EHU00068.1 103 EKEEIAALVKLPGVGKKTAERL 124
                 5666667777777777777654 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1    0.0002       0.3      14      60 ..      73     124 ..      69     124 .. 0.76
   2 !    8.6   0.0    0.0014       2.1      14      31 ..     108     125 ..     104     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
       HHH_3  14 eeLqklpGlgpklAknIvayReknGpfksre.....eLlkvkglgpktfeql 60 
                  eL k++G+gpklA +I+    +++ ++ +e      L+k +g+g+kt e+l
  EHU00068.1  73 RELIKVNGVGPKLALAILSGMSAQQFVTAVEkeeiaALVKLPGVGKKTAERL 124
                 689999********99999998776666554222226999999999999875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0014
       HHH_3  14 eeLqklpGlgpklAknIv 31 
                 + L klpG+g+k+A+++v
  EHU00068.1 108 AALVKLPGVGKKTAERLV 125
                 679999999999999987 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.042        62      46      63 ..      73      89 ..      63      91 .. 0.79
   2 !   11.0   0.0   0.00029      0.44      47      63 ..     106     124 ..      95     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.042
                TTHCTTSTT--HHHHHHH CS
       HHH_8 46 eeeltklpgiGkkiaaki 63
                +e l k+ g+G+k+a  i
  EHU00068.1 73 RE-LIKVNGVGPKLALAI 89
                55.99**********877 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00029
                 T..HCTTSTT--HHHHHHH CS
       HHH_8  47 e..eltklpgiGkkiaaki 63 
                 e  +l klpg+Gkk+a+++
  EHU00068.1 106 EiaALVKLPGVGKKTAERL 124
                 244599**********986 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.061        92       4      24 ..      75      95 ..      73     105 .. 0.79
   2 !   10.2   0.0   0.00047      0.71       3      28 ..     109     132 ..     107     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.061
  Transposase_20  4 LesipGiGpvtaaallaeigd 24
                    L  + G+Gp +a+a+l+ +  
      EHU00068.1 75 LIKVNGVGPKLALAILSGMSA 95
                    55789***********98855 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00047
  Transposase_20   3 lLesipGiGpvtaaallaeigdlrrf 28 
                     +L  +pG+G+ ta +l++e+ d  rf
      EHU00068.1 109 ALVKLPGVGKKTAERLVVEMKD--RF 132
                     57789***************88..45 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00017      0.25      29      73 ..      76     122 ..      68     122 .. 0.89
   2 ?   -1.4   0.0       1.8   2.7e+03      40      64 ..     146     171 ..     145     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                     EEE-T..-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT--EEEEE CS
  FeS_assembly_P  29 idieg..gkVsvditltypacslaeairadaeaalralpgvevveVe 73 
                     i+++g   k +++i  +  a+++++a++++ +aal +lpgv + ++e
      EHU00068.1  76 IKVNGvgPKLALAILSGMSAQQFVTAVEKEEIAALVKLPGVGKKTAE 122
                     7777777999999999*9**********************9998875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
                     E--SSTT-T.THHHHHHHHHHHHC.S CS
  FeS_assembly_P  40 itltypacs.laeairadaeaalral 64 
                     +tlt+p+     ++ +a+a aal +l
      EHU00068.1 146 FTLTTPGPEpETNDAEAEAVAALVSL 171
                     78888886657777777777777665 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.039        58      22      39 ..      77      94 ..      74     113 .. 0.79
   2 ?    7.3   0.0    0.0049       7.3      23      40 ..     113     130 ..     105     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.039
  5_3_exonuc 22 GvpgiGektAakLlkeyg 39
                 v+g+G+k A ++l+ + 
  EHU00068.1 77 KVNGVGPKLALAILSGMS 94
                599**********98765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0049
  5_3_exonuc  23 vpgiGektAakLlkeygs 40 
                  pg+G+ktA +L+ e+++
  EHU00068.1 113 LPGVGKKTAERLVVEMKD 130
                 69**********999875 PP

>> DUF3173  Domain of unknown function (DUF3173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.7     4e+03      11      24 ..      61      74 ..      54      77 .. 0.84
   2 ?   -0.4   0.0      0.73   1.1e+03       7      26 ..     109     129 ..     102     131 .. 0.83
   3 ?    8.4   0.0    0.0013       1.9       7      24 ..     167     184 ..     164     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.7
     DUF3173 11 lGfkehtArdiIrq 24
                 Gf+ ++ r ++r+
  EHU00068.1 61 FGFNSKQERALFRE 74
                59999999999887 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.73
     DUF3173   7 dLikl.GfkehtArdiIrqaK 26 
                  L+kl G  ++tA++++ + K
  EHU00068.1 109 ALVKLpGVGKKTAERLVVEMK 129
                 5899999999***99987776 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0013
     DUF3173   7 dLiklGfkehtArdiIrq 24 
                  L+ lG+k++ A+++I +
  EHU00068.1 167 ALVSLGYKPQEASRMISK 184
                 69*************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1505.66
//
Query:       EHU00069.1  [L=334]
Description: ATP-dependent DNA helicase, component of RuvABC resolvasome [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-82  274.6   0.0    2.8e-82  274.2   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    9.7e-31  105.3   0.2    1.9e-30  104.5   0.2    1.5  1  AAA_lid_4        RuvB AAA lid domain
    3.1e-28   97.4   0.0    5.9e-28   96.5   0.0    1.5  1  RuvB_C           RuvB C-terminal winged helix domain
    7.6e-20   71.7   0.0    1.9e-19   70.4   0.0    1.7  1  AAA              ATPase family associated with various cellul
    1.2e-08   35.0   0.0    5.3e-06   26.5   0.0    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
    7.1e-05   23.1   0.1      0.031   14.6   0.0    2.5  2  AAA_22           AAA domain
    9.8e-05   21.8   0.2      0.037   13.4   0.0    2.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0002   21.2   0.0       0.15   12.0   0.0    2.4  2  AAA_3            ATPase family associated with various cellul
     0.0003   20.7   0.0    0.00047   20.1   0.0    1.2  1  Rad17            Rad17 P-loop domain
     0.0004   19.7   0.4     0.0029   16.9   0.0    2.1  2  TIP49            TIP49 P-loop domain
      0.001   19.5   0.4      0.097   13.1   0.0    2.9  3  AAA_16           AAA ATPase domain
     0.0012   18.6   0.0        1.3    8.7   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
     0.0044   17.1   0.0     0.0091   16.0   0.0    1.5  1  AAA_14           AAA domain
     0.0098   16.4   0.0      0.018   15.6   0.0    1.6  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.021   14.7   0.2       0.15   11.9   0.0    2.1  2  NTPase_1         NTPase
      0.028   14.8   0.0      0.056   13.8   0.0    1.5  1  RNA_helicase     RNA helicase
       0.04   13.9   0.0      0.073   13.1   0.0    1.3  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.046   13.4   0.0       0.12   12.1   0.0    1.7  1  AAA_24           AAA domain
      0.061   12.5   0.0        1.3    8.1   0.0    2.2  2  DUF815           Protein of unknown function (DUF815)
      0.062   13.1   0.0       0.42   10.4   0.0    2.0  2  Bac_DnaA         Bacterial dnaA  protein
      0.065   12.3   0.0        2.3    7.3   0.0    2.2  1  MCM              MCM P-loop domain
      0.067   13.6   0.0       0.15   12.5   0.0    1.6  1  AAA_17           AAA domain
       0.07   12.2   0.0       0.13   11.3   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
      0.071   12.8   0.1       0.37   10.5   0.1    2.2  1  IstB_IS21        IstB-like ATP binding protein
      0.074   12.2   0.0       0.15   11.2   0.0    1.5  1  NB-ARC           NB-ARC domain
        0.1   12.0   0.1        2.2    7.6   0.0    2.1  2  TniB             Bacterial TniB protein
       0.14   12.5   0.6        2.2    8.6   0.1    2.3  2  AAA_19           AAA domain
       0.17   12.4   0.0       0.31   11.6   0.0    1.4  1  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.2   0.0   4.3e-85   2.8e-82       1     159 []      23     181 ..      23     181 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.2 bits;  conditional E-value: 4.3e-85
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleekdvlfideihrlsra 99 
                 +rPk+l+ey+gq +v+e+++ifi+aa+ r++aldh+l++GpPGlGkttla+i+a+e+gv+l++tsgPvlekagdlaa+ltnle++dvlfideihrls++
  EHU00069.1  23 IRPKMLTEYVGQPQVREQMEIFIKAAQLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPV 121
                 7************************************************************************************************** PP

      RuvB_N 100 veevlysamedfrldivigkGpsarsikldlpkftlvgattragllssPlrdrfgivarl 159
                 veevly+amed++ldi+ig+Gp+arsikldlp+ftl+gattrag l+sPlrdrfgiv+rl
  EHU00069.1 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTSPLRDRFGIVQRL 181
                 *********************************************************997 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.2   2.9e-33   1.9e-30       1      74 []     184     257 ..     184     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 2.9e-33
   AAA_lid_4   1 YeeeeLeeivkrsakilgveieeegaaeiarRsRGTPRianrLLrRvrDfaqvkgdgkitkevakkaLellevd 74 
                 Y++++L++iv rsa  lg++++eega eiarRsRGTPRianrLLrRvrDfa+v+++g+++ ev  +aL++l+vd
  EHU00069.1 184 YQVKDLQHIVGRSAACLGLALSEEGALEIARRSRGTPRIANRLLRRVRDFAEVRANGNLSGEVSVTALDMLNVD 257
                 99***********************************************************************9 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   9.2e-31   5.9e-28       2      71 ..     259     328 ..     258     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 9.2e-31
                 T---HHHHHHHHHHHHT.TT--B-HHHHHHHTT--HHHHHHTTHHHHHHTTSEEEETTEEEE-HHHHHHH CS
      RuvB_C   2 lGLdeldikyLkllkekfkggpvglktlaailgeeketiedviEPyLlkeglIertsrGRilTkkglkyl 71 
                 +G+d +d+k+L ++++kf ggpvgl++laa++gee+etiedviEP+L+++g+I+rt+rGR++T+ +++++
  EHU00069.1 259 EGFDYMDRKLLLAIIDKFTGGPVGLDNLAAAIGEERETIEDVIEPFLIQQGFIQRTPRGRMATQHAYRHF 328
                 7*******************************************************************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0     3e-22   1.9e-19       1     130 [.      58     181 ..      58     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 3e-22
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l++GppG GKT+la+ va+e+gv++ ++sg+ l       ++ ++++++++++ +    +lfiDEi++l +              ++L++++++++ +
  EHU00069.1  58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLE------KAGDLAAMLTNLEPH---DVLFIDEIHRLSPVV-----------EEVLYPAMEDYQLD 136
                 699*****************************999......9********998655...7**********8888...........9************* PP

                 ...............SSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA 100 ...............eskvivigatnrpdkldpallrgRfdrkiei 130
                                  ++++igat+r  +l+++l+ +Rf +++++
  EHU00069.1 137 imigegpaarsikldLPPFTLIGATTRAGSLTSPLR-DRFGIVQRL 181
                 ***************888******************.***998876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   8.2e-09   5.3e-06       1     138 []      57     175 ..      57     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 8.2e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 ++l+ GppG gK++la  +a  ++ ++ +  ++       l    ++          ++ ++ +  ++l++DE++r+++ v ++L + +e+ +l+++ g
  EHU00069.1  57 HLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPV------LEKAGDL---------AAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIG 140
                 78999****************9999999988887......5555565.........66677999*********************************99 PP

                 SSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5 100 gelvkaknddllerfrviatanpldrslnelspalrsRf 138
                  +    + +  l++f++i+++ ++     +l+++lr+Rf
  EHU00069.1 141 EGPAARSIKLDLPPFTLIGATTRAG----SLTSPLRDRF 175
                 99997776556666***********....9999*****9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.8e-05     0.031       7      28 ..      57      78 ..      54      82 .. 0.89
   2 ?    5.8   0.1     0.024        15      92     106 ..     107     123 ..      82     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleq 28
                +l+++G++G GKTtl++ ++++
  EHU00069.1 57 HLLIFGPPGLGKTTLANIVANE 78
                799*************988765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.024
      AAA_22  92 ielliiDEaqhlrs...e 106
                 + +l iDE+++l s   e
  EHU00069.1 107 HDVLFIDEIHRL-SpvvE 123
                 689*********.63333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   5.8e-05     0.037       6      42 ..      32      75 ..      27      84 .. 0.67
   2 ?    5.7   0.0     0.013       8.3     107     138 ..     107     138 ..     101     153 .. 0.90
   3 ?   -2.9   0.0       5.8   3.7e+03     184     198 ..     166     180 ..     156     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.8e-05
  Mg_chelatase  6 kGqeeakralei...aaa...Gg..HnlllvGppGsGKtmlakrl 42
                  +Gq + ++ +ei   a a   G    +ll++GppG GKt la+ +
    EHU00069.1 32 VGQPQVREQMEIfikA-AqlrGDalDHLLIFGPPGLGKTTLANIV 75
                  6677777666662221.2222222269***************876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtis 138
                   + vLf+DE+  ++  v evL   +ed ++ i+
    EHU00069.1 107 HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138
                   679**********************9998875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5.8
  Mg_chelatase 184 klsgplldRidlqve 198
                    l  pl dR+ +  +
    EHU00069.1 166 SLTSPLRDRFGIVQR 180
                   688999999998655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00023      0.15       1      28 [.      57      84 ..      57      89 .. 0.93
   2 !    6.8   0.0    0.0088       5.6      64      93 ..     108     137 ..     101     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00023
       AAA_3  1 hvllegvPGlaktllvkalakaldlefk 28
                h+l+ g PGl+kt+l++ +a+ ++++++
  EHU00069.1 57 HLLIFGPPGLGKTTLANIVANEMGVNLR 84
                99********************999875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0088
       AAA_3  64 nllladeinrappktqsalleameerqvtv 93 
                 ++l+ dei r +p ++  l  ame+ q+ +
  EHU00069.1 108 DVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137
                 7999*********************99865 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.4e-07   0.00047      31      83 ..      41      93 ..      25     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.4e-07
       Rad17 31 vkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslk 83
                ++ ++ka  L       LLi GP+G gk+t  ++++ e+g++lr  + pv+ k
  EHU00069.1 41 MEIFIKAAQLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEK 93
                56677888888887889******************************999855 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.5e-06    0.0029      25      77 ..      30      82 ..       8      88 .. 0.82
   2 ?    0.3   0.1       0.5   3.2e+02     281     291 ..     109     119 ..     106     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.5e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 25 glvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelged 77
                  vGq + re + ++++  + +  a   +L+ Gp+g Gkt la  +++e+g +
  EHU00069.1 30 EYVGQPQVREQMEIFIKAAQLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82
                579***********988777776677789********************9965 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.5
                 XXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlD 291
                 vlfiDe+h l 
  EHU00069.1 109 VLFIDEIHRLS 119
                 9*******986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00015     0.097      21      47 ..      51      78 ..      31      95 .. 0.80
   2 ?    2.8   0.0      0.22   1.4e+02     126     158 ..     100     129 ..      90     138 .. 0.72
   3 ?   -0.3   0.0       1.9   1.2e+03      85     130 ..     192     238 ..     166     276 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
      AAA_16 21 sgrp.elvllsGesGvGKsslvrellra 47
                +g+    +l+ G++G GK++l++ ++++
  EHU00069.1 51 RGDAlDHLLIFGPPGLGKTTLANIVANE 78
                45556899**************988765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.22
      AAA_16 126 llallsrderplvlvlDdlqwadeaslqllaaL 158
                 +l  l   e+  vl++D+++++ +   ++l+  
  EHU00069.1 100 MLTNL---EPHDVLFIDEIHRLSPVVEEVLYPA 129
                 33333...33469*********99888887755 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.9
      AAA_16  85 lldeaesaeleawrekleealaavpelagaeasrllellkrll.all 130
                 +  ++++++  a +e+   ++a  +  ++ +a+rll+ +++++ +++
  EHU00069.1 192 IVGRSAACLGLALSEEGALEIARRSRGTPRIANRLLRRVRDFAeVRA 238
                 44445555555555544444445566666677888888888885444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0039       2.5       8      44 ..      41      77 ..      32     101 .. 0.75
   2 !    8.7   0.0    0.0021       1.3      96     124 ..     109     137 ..     101     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
                     HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  8 lkelleqikkvaktdlsvlitGesGtGKellaraihe 44
                     ++  ++ ++   +   ++li G  G GK++la+ + +
       EHU00069.1 41 MEIFIKAAQLRGDALDHLLIFGPPGLGKTTLANIVAN 77
                     444444444444455899**************99876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0021
                      EEEEETGGGS-HHHHHHHHHHHHHSEEES CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegever 124
                      +lf+Dei++l++ + e L  ++++ ++  
       EHU00069.1 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137
                      8******************9999988764 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-05    0.0091       5      96 ..      58     138 ..      56     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe.wekalkslvdegknldvi 96 
                 l+i G+   GKTtl++ +++e          +nl + +   l++  +l  ++ ++ +   + +lf+DEi++++  +e++l   ++++ +ld++
  EHU00069.1  58 LLIFGPPGLGKTTLANIVANEMG--------VNLRTTSGPVLEKAGDLAAMLTNL-E--PHDVLFIDEIHRLSPvVEEVLYPAMEDY-QLDIM 138
                 6899**********877775555........666665554444444566666665.4..4789*******98661455555555555.66766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-05     0.018       2      29 ..      59      84 ..      58     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlr 29
                l+ G+pG GKttla+ +++++  gvnlr
  EHU00069.1 59 LIFGPPGLGKTTLANIVANEM--GVNLR 84
                699**************9999..44443 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.15       1      23 [.      57      79 ..      57      94 .. 0.84
   2 ?    0.4   0.0      0.83   5.3e+02      91     105 ..     102     116 ..      88     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlell 23
                +++i GppG GKtTl + v++++
  EHU00069.1 57 HLLIFGPPGLGKTTLANIVANEM 79
                67899*************99988 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.83
                 HHHHHH-EEEE---S CS
    NTPase_1  91 kalseadviviDEiG 105
                 + l+  dv+ iDEi 
  EHU00069.1 102 TNLEPHDVLFIDEIH 116
                 346889*******95 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.8e-05     0.056       2      57 ..      59     114 ..      58     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.8e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgYtgqevvvidD 57 
                   +++Gp+g GK+tla+ +a+++  +l +++ + v    +    ++ + + ++v+ id+
    EHU00069.1  59 LIFGPPGLGKTTLANIVANEMGVNLRTTS-GPVLEkAGDLAAMLTNLEPHDVLFIDE 114
                   79****************99997774444.333332444444455555555555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.073      14      50 ..      50      87 ..      35      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                HHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE 14 lakalgdvilLeGdLGaGKTtlvrglakalgve.evkS 50
                l   + d +l+ G+ G GKTtl+  +a+++gv+ + +S
  EHU00069.1 50 LRGDALDHLLIFGPPGLGKTTLANIVANEMGVNlRTTS 87
                22222456999*********************988777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019      0.12       5      22 ..      58      75 ..      56     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
      AAA_24  5 iliyGpsgiGKTtlakel 22
                +li+Gp+g GKTtla+  
  EHU00069.1 58 LLIFGPPGLGKTTLANIV 75
                69************9866 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0021       1.3      46     115 ..      48     114 ..      18     117 .. 0.79
   2 ?    1.9   0.0      0.16   1.1e+02     182     227 ..     171     212 ..     168     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
      DUF815  46 qfleglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDD 115
                 + l+g +  ++L++G  G GK +l   + ne+   g+ l   +   l++  +l ++l + + + +lf+D 
  EHU00069.1  48 AQLRGDALDHLLIFGPPGLGKTTLANIVANEM---GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE 114
                 457899999***************99998876...55666778888999999999999999999999986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
      DUF815 182 LsdRFGlwlgFykldqeeYleiveklakklglelekeeleeeAlew 227
                 L dRFG++   +  + ++  +iv + a+ lgl+l++e     Ale 
  EHU00069.1 171 LRDRFGIVQRLEFYQVKDLQHIVGRSAACLGLALSEE----GALEI 212
                 78*****866655666677789999999999999864....44443 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00065      0.42      26      59 ..      47      80 ..      30      87 .. 0.83
   2 ?   -0.1   0.0       1.1   6.8e+02      93     110 ..     102     119 ..      91     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00065
                HHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA 26 vaeapgkkynPlfiygevGlGktHLlkaignevl 59
                 a+  g + + l+i+g+ GlGkt L + ++ne+ 
  EHU00069.1 47 AAQLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80
                56677788899****************9999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                 HHHTT-SEEEEE-GGGGT CS
    Bac_DnaA  93 eklrkvDvLliDDiqfla 110
                  +l   DvL iD+i+ l+
  EHU00069.1 102 TNLEPHDVLFIDEIHRLS 119
                 567778********9885 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0035       2.3      52      96 ..      48      95 ..      23     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0035
                SBBCSS-..EEEEEESSTSTHHHHHHHHHHHSSSEE.EEESSSSSSSH CS
         MCM 52 tklrgdi..nvllvgdpgtaKsqlLkyveklaprav.ytsgkgssaag 96
                ++lrgd   ++l+ g pg++K++l + v++ +  +   tsg    +ag
  EHU00069.1 48 AQLRGDAldHLLIFGPPGLGKTTLANIVANEMGVNLrTTSGPVLEKAG 95
                567777555899999999999999888877666554134455555554 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00023      0.15       1      27 [.      61      87 ..      61     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00023
                EE-TTSSHHHHHHHHHHHHTEEEEEHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaG 27
                +G+PG GK+t+++ ++ ++g+   +++
  EHU00069.1 61 FGPPGLGKTTLANIVANEMGVNLRTTS 87
                6******************98876664 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.13     105     153 ..      28      79 ..      14      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
       T2SSE 105 lddlgaeealkekiaevlrkavrerg....lilvsGgTgsGKttllyallkei 153
                 l +++ +++++e+++ ++++a + rg     +l+ G+ g GKttl++++ +e+
  EHU00069.1  28 LTEYVGQPQVREQMEIFIKAA-QLRGdaldHLLIFGPPGLGKTTLANIVANEM 79 
                 78999999**********999.76653333699**************998876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00057      0.37      48      69 ..      56      77 ..      36     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00057
   IstB_IS21 48 enivllGpsGvGKshlaialgv 69
                + ++++Gp+G GK+ la  ++ 
  EHU00069.1 56 DHLLIFGPPGLGKTTLANIVAN 77
                6789************987665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023      0.15      17      43 ..      54      78 ..      39      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                TSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 17 elqslvvalvGmgGvGKttlakqilnk 43
                 l+   + + G +G+GKttla+ + n+
  EHU00069.1 54 ALD--HLLIFGPPGLGKTTLANIVANE 78
                445..7889************999887 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0034       2.2      12      53 ..      30      73 ..      21      86 .. 0.73
   2 ?    2.1   0.0      0.17   1.1e+02     107     131 ..      93     118 ..      75     122 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0034
        TniB 12 gyprakeilerLeeLleypk..rkrmpnlllvGdsnnGKtmive 53
                +y    ++ e++e  +++++   +   +ll++G++  GKt++++
  EHU00069.1 30 EYVGQPQVREQMEIFIKAAQlrGDALDHLLIFGPPGLGKTTLAN 73
                555566666777777766544256679**************987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
        TniB 107 leqqvlrllrelkvr.vLiiDEihnl 131
                 +  +  ++l +l+++ vL iDEih+l
  EHU00069.1  93 KAGDLAAMLTNLEPHdVLFIDEIHRL 118
                 55556677777776449*******97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0035       2.2      11      34 ..      56      79 ..      46      92 .. 0.80
   2 ?    2.0   0.1      0.37   2.4e+02      98     125 ..     102     129 ..      82     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0035
      AAA_19 11 kvllvtaGpGtGKTrvlkhivall 34
                ++ll+ ++pG GKT++ + + +++
  EHU00069.1 56 DHLLIFGPPGLGKTTLANIVANEM 79
                5789**********9877766655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.37
      AAA_19  98 kklqeeellivDEfqdvdelqyrLlkal 125
                 ++l+ +++l++DE+  ++++  ++l   
  EHU00069.1 102 TNLEPHDVLFIDEIHRLSPVVEEVLYPA 129
                 4576777**********97777766544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00048      0.31      13      35 ..      57      79 ..      46     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00048
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                 + i+G+ G GK+tL++++a+++
  EHU00069.1 57 HLLIFGPPGLGKTTLANIVANEM 79
                5789**************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2375.91
//
Query:       EHU00070.1  [L=261]
Description: High-affinity zinc uptake system membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-83  278.1  26.5    7.6e-83  278.0  26.5    1.0  1  ABC-3     ABC 3 transport family
    2.2e-06   26.9  27.5    2.8e-06   26.5  27.5    1.2  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.0  26.5   8.5e-87   7.6e-83       1     257 [.       1     257 [.       1     258 [. 0.99

  Alignments for each domain:
  == domain 1  score: 278.0 bits;  conditional E-value: 8.5e-87
       ABC-3   1 qyeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglv 99 
                 ++e+l++ +l++++++la+++lgsfvv+r++s++gd+l+Ha+l Gva++++l+vn+++++ilv++++a++l++l+r+ +l++dt++gi+++++l+lglv
  EHU00070.1   1 MIELLLPGWLGGVMLALAAGPLGSFVVWRKMSYFGDTLAHASLLGVAFGLMLDVNPYYAVILVTVCLALGLVWLERRPHLAIDTLLGIMAHSALSLGLV 99 
                 57899********************************************************************************************** PP

       ABC-3 100 lvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLviallii 198
                 +vsl+++++vdl++yLfG++l+++  dl  +a+ +  vl+++ ++w+ ll++t+++elA+v+g+++++ +l+l++++al++ va+++vG++++++ll i
  EHU00070.1 100 VVSLMSNVRVDLMAYLFGDLLAVTPADLGAMAAGVGCVLAVMAWQWRALLSMTISPELAQVDGVNIQRTRLILMLVTALTIGVAMKFVGALIITSLLLI 198
                 *************************************************************************************************** PP

       ABC-3 199 PaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                 PaatArr++rs+e+++++A+l+g+++v+ Gl++S+++d+++G+++vl+a++lf+++++ 
  EHU00070.1 199 PAATARRFARSPEMMAAIAVLIGVMAVTGGLTFSAFYDTPAGPSVVLCAAILFIVSMVR 257
                 ********************************************************985 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5  27.5   3.2e-10   2.8e-06     106     311 ..      58     256 ..      11     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.2e-10
       FecCD 106 aaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkldlla 204
                  a+   l+++ l l l+  +++ + +   L Gi+ ++ ls    ++ l+  ++   +++ +l+G+l  ++  ++  +++ + ++l+++++  r l  ++
  EHU00070.1  58 YAV--ILVTVCLALGLVWLERRPHLAIDTLLGIMAHSALSLGLVVVSLM--SNVRVDLMAYLFGDLLAVTPADLGAMAAGVGCVLAVMAWQWRALLSMT 152
                 333..23333333333312233333334678988888777666666666..358899****************************************** PP

       FecCD 205 lgdetAkslGvnvervrllllllvalltavavalvGpigFvGL.ivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivtaliG 302
                 ++ e+A+  Gvn++r+rl+l+l++al ++va+ +vG +    L ++P    + + ++ + +  +++l+G++ ++   +++ ++    ++p+g  + l  
  EHU00070.1 153 ISPELAQVDGVNIQRTRLILMLVTALTIGVAMKFVGALIITSLlLIPAATARRFARSPEMMAAIAVLIGVMAVTGGLTFSAFY----DTPAGPSVVLCA 247
                 ************************************8777664246666666777799***************9999999877....556666666666 PP

       FecCD 303 apffiylll 311
                 a++fi+ ++
  EHU00070.1 248 AILFIVSMV 256
                 667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2034.60
//
Query:       EHU00071.1  [L=251]
Description: High-affinity zinc uptake system ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-29  101.8   0.0    6.4e-29  101.2   0.0    1.3  1  ABC_tran      ABC transporter
    1.5e-07   31.5   1.6      0.009   15.8   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0001   22.0   0.1     0.0002   21.0   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0001   22.6   0.0    0.00018   21.8   0.0    1.3  1  AAA_22        AAA domain
     0.0026   17.4   0.6       0.67    9.5   0.1    2.2  2  AAA_25        AAA domain
      0.003   17.0   0.1       0.28   10.6   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0041   17.0   0.3      0.014   15.3   0.1    1.8  2  RsgA_GTPase   RsgA GTPase
     0.0094   16.3   0.4      0.017   15.5   0.4    1.5  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
       0.01   14.6   0.2       0.86    8.3   0.0    2.2  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.011   15.6   0.1      0.029   14.3   0.0    1.7  2  Rad17         Rad17 P-loop domain
      0.018   14.4   0.1      0.041   13.3   0.1    1.6  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.023   14.7   0.1        7.9    6.5   0.0    2.1  2  MutS_V        MutS domain V
      0.031   14.8   0.0       0.04   14.4   0.0    1.2  1  AAA_23        AAA domain
      0.066   12.8   0.0        0.1   12.2   0.0    1.3  1  AAA_27        AAA domain
      0.087   12.5   0.0       0.13   11.9   0.0    1.5  1  AAA_30        AAA domain
       0.12   12.3   0.8        1.3    9.0   0.1    2.2  2  NACHT         NACHT domain
       0.15   12.0   0.0       0.27   11.2   0.0    1.3  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.17   12.3   0.1       0.37   11.2   0.1    1.7  1  AAA           ATPase family associated with various cellular 
       0.19   10.6   0.2       0.28   10.1   0.2    1.2  1  AAA_PrkA      PrkA AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   6.8e-32   6.4e-29       1     137 []      20     149 ..      20     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 6.8e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsk 91 
                 l+ vsl l++g+++ ++G+nGaGKStL+++++gll p +G++           ++s++ +ig++pq+ +++p+l v  +        ++ ++i  al++
  EHU00071.1  20 LSGVSLALHPGKILTLLGPNGAGKSTLVRVVLGLLAPSSGQV-----------HRSANLRIGYVPQKLHIDPTLPVTVErfmrlsrgARHQDILPALKR 107
                 6789**************************************...........78999***************98555559***887777778888888 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++  +l ++++    ++LSgG+ qrv lar+ll++pkll+lDEpt+
  EHU00071.1 108 VQAGHLLTSPL----QKLSGGEMQRVLLARTLLNQPKLLVLDEPTQ 149
                 88888888888....*****************************95 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.6e-05     0.015       3      24 ..      34      55 ..      32      84 .. 0.76
   2 !   15.8   0.1   9.6e-06     0.009     233     302 ..     117     184 ..      91     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllar 24
                 l GpNg+GKS+L +   +l  
  EHU00071.1 34 TLLGPNGAGKSTLVRVVLGLLA 55
                699************9999964 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.6e-06
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 p+ +lS G  +   l+  ll ++   +ll++DEp  g +   +  l++l+++l+   +  v++++H+ +l+
  EHU00071.1 117 PLQKLSGGEMQRVLLARTLLNQP---KLLVLDEPTQGVDVNGQVALYDLINQLRHeLNCAVLMVSHDLHLV 184
                 55666667555547777777766...9***********************99988899*********9995 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   2.1e-07    0.0002      12      50 ..      20      58 ..      10      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.1e-07
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++g ++ +++  +  l Gp+G+GKSTl+  +  lL p++
  EHU00071.1 20 LSGVSLALHPGKILTLLGPNGAGKSTLVRVVLGLLAPSS 58
                5677888898889999************99999999987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.9e-07   0.00018       5     126 ..      30     184 ..      27     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee................erpevvfvtlpsst..sskdllrellralglelka..erlsseell.eal 82 
                  +il++ G+ G+GK+tl+r +l  l   +   +                + ++++ vt+   +  s+    +++l al++ + +   +  ++ l    +
  EHU00071.1  30 GKILTLLGPNGAGKSTLVRVVLGLLAPSSG--QvhrsanlrigyvpqklHIDPTLPVTVERFMrlSRGARHQDILPALKRVQAGhlLTSPLQKLSgGEM 126
                 6899******************99954333..3569999******999999999999999999999999999*******99999997777777877888 PP

      AAA_22  83 eqalrarav...ielliiDEaqh.lr..s....eealeeLrsllnl....srkgvqli 126
                 ++ l ar     ++ll++DE    ++        +++++Lr+ ln+     +++++l+
  EHU00071.1 127 QRVLLARTLlnqPKLLVLDEPTQgVDvnGqvalYDLINQLRHELNCavlmVSHDLHLV 184
                 88888888888889******76658665234455555555555555555555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0067       6.4      32      50 ..      29      47 ..      14      66 .. 0.88
   2 !    9.5   0.1   0.00071      0.67     128     188 ..     128     179 ..      79     182 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0067
      AAA_25 32 agelallaGapgtGKttla 50
                 g++  l G+ g+GK+tl+
  EHU00071.1 29 PGKILTLLGPNGAGKSTLV 47
                688899***********97 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00071
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 +++  l++++    +++l+v+D  +   g d n + +   l+++l++   ++++avl+v H
  EHU00071.1 128 RVL--LARTLLN--QPKLLVLDEPT--QGVDVNGQVALYDLINQLRH---ELNCAVLMVSH 179
                 333..4444444..68899988654..46677777777777766665...9*********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0003      0.28      26      55 ..      32      61 ..      17      69 .. 0.76
   2 ?    4.6   0.0     0.021        19     136     202 ..     120     184 ..      75     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
                EEEEEESTTSSHHHHHHHHHHHCTT.TTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAilFvLGersakk 55
                +  ++GpNG+GKs l+  +l +L  +s + 
  EHU00071.1 32 ILTLLGPNGAGKSTLVRVVLGLLAPSSGQV 61
                56789**********998877776666554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.021
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202
                  LSgGe +     +l+A    ++  l +lDe  +  D +   ++ +l+++ +++  + ++++s++ +++
  EHU00071.1 120 KLSGGEMQ----RVLLARTLLNQPKLLVLDEPTQGVDVNGQVALYDLINQLRHElnCAVLMVSHDLHLV 184
                 68999855....56777777888899***********************88876336677777765443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.5e-05     0.014      92     130 ..      22      61 ..       5      70 .. 0.75
   2 ?   -1.1   0.0       1.6   1.5e+03     115     134 ..     162     181 ..     155     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                   ++ +l+  k+ +l+G+ G+GKStL+ ++l+ l  + g+v
   EHU00071.1  22 GVSLALHPgKILTLLGPNGAGKSTLVRVVLGLLAPSSGQV 61 
                  5555666669****************99988766666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                  HHHHHCTT-----S------ CS
  RsgA_GTPase 115 Linallpelelktgevsekl 134
                  Lin+l+ el+ ++  vs++l
   EHU00071.1 162 LINQLRHELNCAVLMVSHDL 181
                  88999999988888888876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   1.8e-05     0.017      25      58 ..      31      64 ..      12     177 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrg 58
                 ++ l G+ G GKs+lvr +l  l  + g + r 
  EHU00071.1 31 KILTLLGPNGAGKSTLVRVVLGLLAPSSGQVHRS 64
                7999****************98777774444333 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.014        13     227     262 ..      10      48 ..       3      52 .. 0.80
   2 ?    8.3   0.0   0.00091      0.86     375     423 ..     158     206 ..     130     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
                 EEEEETTTEEEEEEEE..-SS.EEEEEE-TTSSHHHHHH CS
  ABC_ATPase 227 veielpngkkvsGmgi..pkG.vtlIvGggfhGKsTLLe 262
                 v+i+ +++  +sG+ +    G + ++ G++  GKsTL++
  EHU00071.1  10 VSIQFAQRTVLSGVSLalHPGkILTLLGPNGAGKSTLVR 48 
                 8888899999999654335666***************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00091
                 -HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHHH CS
  ABC_ATPase 375 plvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvteka 423
                 +l d++++l+++l+  +++v+  +   ++  d+v+ ++++ +   t +a
  EHU00071.1 158 ALYDLINQLRHELNCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEA 206
                 6889************************************999888776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.1e-05     0.029      33      79 ..      18      64 ..      11      91 .. 0.83
   2 ?   -3.2   0.0       7.2   6.8e+03      30      50 ..     125     144 ..     120     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnp 79
                + l   +L  ++ +iL + GP G gkst v+v+   l+++  +   +
  EHU00071.1 18 TVLSGVSLALHPGKILTLLGPNGAGKSTLVRVVLGLLAPSSGQVHRS 64
                5677788999999******************9887777766665555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.2
       Rad17  30 evkewlkadvLesrkkriLLi 50 
                 e+++ l a +L +++k ++ +
  EHU00071.1 125 EMQRVLLARTLLNQPKLLV-L 144
                 6788899999999976544.3 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.3e-05     0.041      14      51 ..      22      59 ..       7      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
  Mg_chelatase 14 aleiaaaGgHnlllvGppGsGKtmlakrlpsllpplse 51
                   + +a   g  l l+Gp G+GK+ l + + +ll+p s 
    EHU00071.1 22 GVSLALHPGKILTLLGPNGAGKSTLVRVVLGLLAPSSG 59
                  4567777778899********************99875 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0092       8.6       3      18 ..      35      50 ..      32      72 .. 0.83
   2 ?    6.5   0.0    0.0084       7.9      76     141 ..     137     201 ..     119     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0092
                EE-STTSSHHHHHHHH CS
      MutS_V  3 itGpnmaGkstylrqv 18
                + Gpn aGkst++r v
  EHU00071.1 35 LLGPNGAGKSTLVRVV 50
                56***********965 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0084
                 -TTSEEEEESTS-SS-HHHHHHHHHHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEE CS
      MutS_V  76 tekslvilDElGRGtstydGlaialavaeyllekikaktlfatHyheltklaekleevknlhlavk 141
                 ++  l++lDE   G  ++  +a+ + ++++l ++ ++ +l+  H  +l   ++      n h+ ++
  EHU00071.1 137 NQPKLLVLDEPTQGVDVNGQVAL-YDLINQLRHELNCAVLMVSHDLHLVMAKTDEVLCLNHHICCS 201
                 577899********988766666.7889999*************9888877776666666676665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   4.2e-05      0.04      20      37 ..      31      48 ..       5      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.2e-05
      AAA_23 20 gltlItGpNGaGKTTild 37
                ++  + GpNGaGK+T+++
  EHU00071.1 31 KILTLLGPNGAGKSTLVR 48
                456688**********87 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011       0.1      27      71 ..      31      70 ..      19     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_27 27 dlhliyGpNEAGKstalrAisdllfGipertkdnflhdakkLrig 71
                ++  ++GpN AGKst++r +  ll       +   +h   +Lrig
  EHU00071.1 31 KILTLLGPNGAGKSTLVRVVLGLLA-----PSSGQVHRSANLRIG 70
                455678************9999983.....233445555555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.13      15      51 ..      27      63 ..      13     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaweaaggrvig 51
                 ++ ++ +l Gp G+GK+t+++++  +++ + g+v+ 
  EHU00071.1 27 LHPGKILTLLGPNGAGKSTLVRVVLGLLAPSSGQVHR 63
                445569999**************99988888667765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0013       1.3       3      25 ..      33      55 ..      31      65 .. 0.83
   2 ?    1.8   0.1      0.22     2e+02      56     114 ..     112     168 ..      88     187 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                + l G++G GK+tL++ +  ++a
  EHU00071.1 33 LTLLGPNGAGKSTLVRVVLGLLA 55
                6799***********98877766 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.22
                 HHHCCCCTS--S.SS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHC CS
       NACHT  56 dllfsqlpepaa.pvsevwavllelperlLlilDglDelvtdlgqkekqpvrtlLselir 114
                  ll+s+l+++++ + ++v   ++ l +  Ll+lD   + v+ +gq    ++ +l+++l  
  EHU00071.1 112 HLLTSPLQKLSGgEMQRVLLARTLLNQPKLLVLDEPTQGVDVNGQ---VALYDLINQLRH 168
                 566666665544144557777777788888999999999998888...444444444433 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00028      0.27      11      41 ..      22      52 ..       7      63 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                HHHHHHCHTEEEEEEESTTSSHHHHHHHHHH CS
        TsaE 11 gkklakalgdvilLeGdLGaGKTtlvrglak 41
                g +la + g++++L G+ GaGK+tlvr ++ 
  EHU00071.1 22 GVSLALHPGKILTLLGPNGAGKSTLVRVVLG 52
                44444434889****************9875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00039      0.37       2      22 ..      34      54 ..      33     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
                EEESSTTSSHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel 22
                 l Gp G GK++l++ v   l
  EHU00071.1 34 TLLGPNGAGKSTLVRVVLGLL 54
                589**************9876 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2    0.0003      0.28      89     108 ..      31      50 ..      25      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
    AAA_PrkA  89 qilyllGPvggGksslverl 108
                 +il llGP g+Gks+lv  +
  EHU00071.1  31 KILTLLGPNGAGKSTLVRVV 50 
                 79**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1963.35
//
Query:       EHU00072.1  [L=315]
Description: High-affinity zinc uptake system periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-58  197.5   0.0    2.8e-58  197.3   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.3   0.0   1.6e-62   2.8e-58       1     252 [.      29     307 ..      29     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 197.3 bits;  conditional E-value: 1.6e-62
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCEEEEETTTTC............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrvevidlsegv............... 84 
                 Vva+++p+g +++++a     v+vL+p+ga+ H+y ++p+dv++l++Adl+v++g e+E+++ k +a++++++++e+++   gv               
  EHU00072.1  29 VVASIKPVGFIASAIADGVTPVEVLLPDGASEHDYALRPSDVKRLQNADLVVWVGPEMEAFMTKSAAALPEKKNLEIVQIP-GVktmllrggedddhdd 126
                 9***************999********************************************999999999999999644.44444455554444444 PP

                 ......CSEBCSS...........ESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHH CS
                 ......xxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA  85 ......eeeeeee...........DpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgyl 166
                       +     +           + H+W+sp+ a++++ +i ++L+e+ p+++ +++an++ ++++L + d++i ++la ++  ++ ++++hda+ y+
  EHU00072.1 127 heaaehD-----HdaehhhhhgefNMHLWMSPEIAQKTAVAIHEKLLELMPQDKVKLDANLQHFEAELADTDKRIISQLAPVK--DKGYFVFHDAYTYF 218
                 4443330.....134444567899********************************************************555..566*********** PP

                 HHHTT-EEEEEESSSSS....HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EEEEE-STSS.STSTTSTTSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
        ZnuA 167 arayglevagiagiste....aaqiaalieeikeagvkaifveplaspklaetlaeeagvkvatlyslds.lgdegsaetYidmmranles 252
                 +++ygl   g +++++e    a+++ ++++++ e+++ ++f+ep+++p++++++a+ ++v+ +tl++l + ++ +  +++Y++++ +  ++
  EHU00072.1 219 EKHYGLSPTGHFTVNPEiqpgAQRLHQIRTQLVEKKAVCVFAEPQFRPAVIDAVARGTQVRKGTLDPLGTdISLG--KDSYVKFLSQLSSQ 307
                 *******************************************************************65533333..47999998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2395.22
//
Query:       EHU00073.1  [L=443]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-35  119.7   0.4    8.5e-35  118.9   0.4    1.4  1  Peptidase_M23    Peptidase family M23
    1.5e-10   41.0   0.3    3.7e-09   36.6   0.0    2.6  2  OapA             Opacity-associated protein A LysM-like domai
    4.3e-09   36.1   0.1    8.3e-09   35.2   0.1    1.5  1  OapA_N           Opacity-associated protein A N-terminal moti
    1.2e-05   25.3   1.0    2.8e-05   24.1   0.1    2.1  2  LysM             LysM domain
  ------ inclusion threshold ------
      0.082   12.7   0.1       0.19   11.6   0.1    1.7  1  Biotin_lipoyl_2  Biotin-lipoyl like
      0.092   12.7   0.0       0.23   11.3   0.0    1.6  1  Amidase_5        Bacteriophage peptidoglycan hydrolase


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.4   2.8e-38   8.5e-35       2      96 .]     316     410 ..     315     410 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 2.8e-38
                    EESSEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   2 fhkGidiaapkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +hkG+d+a p gtpVlA+ dG+Vv a++ +++Gn+v i+hg +y+t+y+hl+k+ vk+gqkVk+G+ I+ +g+tgrstgphLhfei+ n++av+p
     EHU00073.1 316 PHKGVDFALPVGTPVLAVGDGEVVVAKNGGAAGNYVAIRHGRQYMTRYMHLKKVLVKPGQKVKRGDRIALSGNTGRSTGPHLHFEIWINNQAVNP 410
                    7*************************998788**************************************************************9 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.2e-12   3.7e-09       3      83 ..      99     177 ..      97     179 .. 0.92
   2 ?    1.8   0.0     0.088   2.6e+02      54      82 ..     248     276 ..     208     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.2e-12
        OapA   3 keyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvriklnaqgkvdelqlekgak.svlftRqsDGsfkr 83 
                 ++y+v++g+tL+    + ++++sd+nal+    +dk l nl+ Gq++   ln+ g++d+++ e + + +  +tR+  G+f+ 
  EHU00073.1  99 HDYTVSSGDTLSSALNQYGIDMSDINALVA---SDKDLRNLQVGQQLSWTLNDAGALDTFTWEISRReTRTYTRTDKGGFSM 177
                 79**************************96...67*************************99988885678********975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.088
        OapA  54 naqgkvdelqlekgaksvlftRqsDGsfk 82 
                 +aq ++  ++l +g+k+   +R  DG f 
  EHU00073.1 248 SAQSQLLGVRLRSGGKDYYAFRAEDGKFY 276
                 57889999999999999999******985 PP

>> OapA_N  Opacity-associated protein A N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   2.8e-12   8.3e-09       2      28 .]      12      39 ..      11      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.8e-12
      OapA_N  2 fqrLPklHRrlliaLslvvlvlllw.Ps 28
                f++LP++HR++l++L++v+l +++w P+
  EHU00073.1 12 FNNLPRPHRVMLGSLTVVTLAVAVWrPY 39
                9************************996 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   9.3e-09   2.8e-05       1      43 [.     101     144 ..     101     145 .. 0.87
   2 ?   -2.2   0.1       1.6   4.7e+03      36      42 ..     372     378 ..     369     381 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 9.3e-09
                 EEE-TT--HHHHHHHCTCHHHHHHHHC....TCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaN....nlsspdkifpGqkLki 43 
                 YtV +GDTL+s  ++ygi+++++ ++      l++   +++Gq+L +
  EHU00073.1 101 YTVSSGDTLSSALNQYGIDMSDINALVasdkDLRN---LQVGQQLSW 144
                 9******************9999999977444444...*******86 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                 -TTEEEE CS
        LysM  36 fpGqkLk 42 
                 +pGqk k
  EHU00073.1 372 KPGQKVK 378
                 6777764 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.3e-05      0.19      13      31 ..     366     384 ..     365     385 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
  Biotin_lipoyl_2  13 VaqlnVkdGqrVkaGdvLa 31 
                      +++++Vk Gq Vk Gd +a
       EHU00073.1 366 LKKVLVKPGQKVKRGDRIA 384
                      689*************886 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.8e-05      0.23      55     103 ..     359     408 ..     340     412 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.8e-05
   Amidase_5  55 tlfdslikngykeiaennakrGd.ifiwGvrGasaGagGhtglfidsesi 103
                 ++  ++  ++    + +++krGd i+++G  G s+G + h  ++i+++++
  EHU00073.1 359 YMTRYMHLKKVLVKPGQKVKRGDrIALSGNTGRSTGPHLHFEIWINNQAV 408
                 344444444444445569****9999*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3258.86
//
Query:       EHU00074.1  [L=315]
Description: acyl (myristate) transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-97  325.0   0.0    4.5e-97  324.8   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera
  ------ inclusion threshold ------
      0.026   13.4   0.0      0.042   12.8   0.0    1.3  1  DUF1729          Domain of unknown function (DUF1729)


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.8   0.0    5e-101   4.5e-97       3     295 .]      14     306 ..      12     306 .. 0.99

  Alignments for each domain:
  == domain 1  score: 324.8 bits;  conditional E-value: 5e-101
  Lip_A_acyltrans   3 kfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvafi 96 
                       f++++l+++yw+ wl i++l+ +al+P +v++ +l glg++a+k++k+ r++a+ NL +++pe se +r++i+d++f+++++a+++++++ ++
       EHU00074.1  14 VFERSFLKPKYWGSWLAIGALAGIALMPPRVRDPLLGGLGKFAGKLAKGARRRALINLYYCLPELSESQRDAIVDQMFATAPQAMAMMAELGMR 107
                      5899****************************************************************************************** PP

  Lip_A_acyltrans  97 sdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalrk 190
                      ++ +i++rve+ g e i++ +a +++vi+l+pH++++++++++la+ ++++a++++n+  pl++++++++R+rfgg++++r+++ik++i+++r+
       EHU00074.1 108 DPAQIRQRVEWHGREIIDQLQADKQNVIFLVPHGWAVDIPAMLLASEGQMMAAMFHNQSDPLVDYVWNRVRRRFGGRMHARNDGIKPFISSVRQ 201
                      ********************************************************************************************** PP

  Lip_A_acyltrans 191 gevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktkaavipvaiirkkdgskytvsvhPaldlssteDveqiaqalneilekeitaaPe 284
                      g+++++lpDqd+g+++s fv+fF++++at+++ ++l++ ++a+v+p+++++++  +k+++ v+P++d   ++D+ q+a+++ne++e +++++Pe
       EHU00074.1 202 GYWGYYLPDQDHGPEHSEFVDFFATYKATLPAVGRLMKVCRARVVPLFPVYNGARHKLEIYVRPPMDDLLEADDRQLARRMNEEVEVFVRPHPE 295
                      ********************************************************************************************** PP

  Lip_A_acyltrans 285 qylwlhrrfkt 295
                      qy+w+++++kt
       EHU00074.1 296 QYTWILKLLKT 306
                      *********97 PP

>> DUF1729  Domain of unknown function (DUF1729)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.6e-06     0.042     151     234 ..     108     189 ..      79     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-06
     DUF1729 151 avekrkaalekkrdeiierlnkdyakpwfavdeegelveleemtYsevvrRlveLaflksrkewidpswkklfqdllqrveeRl 234
                 + ++ ++ +e + +eii++l +d + + f v  +g  v++ +m  +   + ++  +f+++    +d  w+++ +++  r+++R 
  EHU00074.1 108 DPAQIRQRVEWHGREIIDQLQADKQNVIFLV-PHGWAVDIPAMLLASEGQ-MMAAMFHNQSDPLVDYVWNRVRRRFGGRMHARN 189
                 33444467888899***************66.99**********998876.556688899****************99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2425.76
//
Query:       EHU00075.1  [L=410]
Description: hypothetical protein CKS_1816 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-34  117.6  45.3    1.9e-33  115.9  34.7    2.0  2  MFS_1     Major Facilitator Superfamily
    3.3e-08   32.8  20.6    1.9e-06   27.0   0.5    3.1  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.77    9.7   4.6       0.19   11.7   0.4    2.4  2  DUF2755   Protein of unknown function (DUF2755)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9  34.7   3.1e-37   1.9e-33       6     322 ..      26     334 ..      21     338 .. 0.81
   2 !   13.7  14.2   3.7e-06     0.022      66     181 ..     295     406 ..     286     410 .] 0.74

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 3.1e-37
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 f +++a +++ p++  +++ ++ +  + +++ lt+y lg +v++ +lG+lsd++Grr+vll g+l+fa++++l +++s +  ++ lr+lqG+  +++ +
  EHU00075.1  26 FATYIAHDMIQPSML-LVTAEFDVGDQWVSTSLTAYLLGGVVLQWLLGPLSDKYGRRPVLLSGILFFAAACILTTWVSDIEQFVSLRFLQGISLCFIGA 123
                 88899999******9.9******99*********************************************55555977777****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkal 203
                 +g+a+i + f +    r ++l++  + l+++ gpl+g++ ++ ++Wr++f+++a+ s++af++  l+ + ++++  r  ++ +     p  +++ ++ l
  EHU00075.1 124 VGYAAIQEAFEEALAVRIMALMANVALLAPLAGPLAGAAWLTVGSWRSMFWLFAACSAVAFIV--LWRVMPETAGDRHQSIAL-----PVLARN-YGRL 214
                 ************************************************************997..444444444444444444.....667777.6666 PP

       MFS_1 204 lkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllal..lllllaalglallavtssa 300
                  kd+++++  +a+ l+f+ + + ++l+p++l+ + gls  ++ +ll   ++++++++ l +++l+ r++ + +  +a   +ll l+++++a l +t+s+
  EHU00075.1 215 IKDRQVMFGSFAIGLVFIPILTWVALSPVILMRDEGLS-RMEYALLQLPVFMAMIAGNLTLSKLVGRMPIEQPVKFAAwpILLGLSLALFATLINTHSY 312
                 66665522333333344466669***************.5777777777777777889*********99966655555223333444444555555778 PP

       MFS_1 301 vllllvlvliGfglgfvfpsll 322
                 +l+ ++l l+ fg+g+v++ l 
  EHU00075.1 313 LLITAGLSLYAFGGGMVNAGLY 334
                 88888***********998765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.7e-06
       MFS_1  66 llglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsll 163
                 l   l+++l+ l+++++ ++++ll+ + +   +++g+++ ag++ ++ ++++e +g++ ++l++ + l  + g  l+  ++ s+g  +  +i+ i ++l
  EHU00075.1 295 L---LGLSLA-LFATLInTHSYLLITAGLSLYAFGGGMVNAGLYRLTLYASDEAKGSVAAMLGMISILTLATGIELAKHFYFSGGVIWFSLINFISGVL 389
                 3...333333.333333344446777777666666899999999999999999********************************************** PP

       MFS_1 164 afvlfllllpeepperkr 181
                 +f l+l++l +e++++++
  EHU00075.1 390 WFGLMLMFL-RERRRHAK 406
                 *88655555.44444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.5   3.2e-10   1.9e-06      47     117 ..      52     119 ..      32     124 .. 0.92
   2 !   14.8   1.4   1.6e-06    0.0095     367     448 ..     121     202 ..     118     204 .. 0.90
   3 ?    0.2   6.4     0.044   2.6e+02      59     159 ..     267     372 ..     246     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.2e-10
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvG 117
                 +++ ++ ++l+G+++ + ++g+l+d++GR+++ll ++++f ++ +l+ +      +e+++  R+l Gi++ 
  EHU00075.1  52 WVSTSLTAYLLGGVVLQWLLGPLSDKYGRRPVLLSGILFFAAACILTTWVS---DIEQFVSLRFLQGISLC 119
                 56677889******************************************9...9*************875 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.6e-06
                 TTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHH.HHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCC CS
    Sugar_tr 367 wgpvpwvlvsElfpqsvRskalaiavavnwlanflisll.fpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleei 448
                 +g v +  ++E f +++    +a+ ++v  la ++  l    ++t  ++   +f++fa++ ++++i+ +  +pet+g  ++ i
  EHU00075.1 121 IGAVGYAAIQEAFEEALAVRIMALMANVALLAPLAGPLAgAAWLTVGSW-RSMFWLFAACSAVAFIVLWRVMPETAGDRHQSI 202
                 688899999**************************99873667888888.***************************988766 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT..SS-TGGGGGHHHHHHHHHHHHHH...HHHHHHTTS-SCCHHHHHHHHHHHHHHHHH CS
    Sugar_tr  59 aiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk..nsvevlivgRvlvGigvGlasvl...vPmyisEiApkklRgalvslyqlaitfGil 152
                  i+G l++++l+ r+   +   +aa   + g  l  +a+     s+ ++++g  l  +g G++++     ++y+s  A+ +++ +l+++  l +++Gi 
  EHU00075.1 267 MIAGNLTLSKLVGRMPIEQPVKFAAWPILLGLSLALFATLIntHSYLLITAGLSLYAFGGGMVNAGlyrLTLYASDEAKGSVAAMLGMISILTLATGIE 365
                 5667777777777777777778877777788777777775455788899999*******999986523379**************************** PP

                 HHHHHHH CS
    Sugar_tr 153 vaaifgl 159
                 +a  f++
  EHU00075.1 366 LAKHFYF 372
                 9998875 PP

>> DUF2755  Protein of unknown function (DUF2755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4       2.2   1.3e+04      70      84 ..     226     238 ..     221     246 .. 0.54
   2 ?   11.7   0.4   3.2e-05      0.19      73     100 .]     377     404 ..     348     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.2
     DUF2755  70 avGtlfglvpflaGl 84 
                 a+G++f  +p+l+ +
  EHU00075.1 226 AIGLVF--IPILTWV 238
                 445544..4555444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.2e-05
     DUF2755  73 tlfglvpflaGlvilgvlalilrlrrrr 100
                 + f+l+ f+ G++ +g + ++lr rrr+
  EHU00075.1 377 IWFSLINFISGVLWFGLMLMFLRERRRH 404
                 349**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2897.97
//
Query:       EHU00076.1  [L=480]
Description: pyruvate kinase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.9e-129  429.7   5.2   9.2e-129  429.3   5.2    1.1  1  PK        Pyruvate kinase, barrel domain
    1.4e-28   99.4   0.4    4.9e-28   97.7   0.1    2.1  2  PK_C      Pyruvate kinase, alpha/beta domain
  ------ inclusion threshold ------
       0.13   11.9   0.3       0.31   10.7   0.3    1.6  1  DUF2737   Protein of unknown function (DUF2737)


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.3   5.2  1.5e-132  9.2e-129       2     341 ..       6     344 ..       5     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 429.3 bits;  conditional E-value: 1.5e-132
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCTC CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldekl 100
                 rrtkiv+tlGPa++++++lek+i+aG+nvvrlnfshG+ e+hq r ++vr+++ klg++vail D++Gp+ir++++k+gk  + l+ gd++   ld++l
  EHU00076.1   6 RRTKIVTTLGPATDRDNNLEKIIAAGANVVRLNFSHGTPEDHQMRADKVRQIAAKLGRHVAILGDLQGPKIRVSTFKEGK--VFLNVGDRFL--LDAAL 100
                 9*****************************************************************************99..********99..78888 PP

                 .TTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 101 .keegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                  k+egd+e + +dyk++ +dv +G+++l+dDG+++lkvlev+  k + +ev+++g l+++kg+n++g+ ++++al+ekDkad+ +++k +vd +a+sf 
  EHU00076.1 101 gKGEGDKERVGIDYKGLPEDVVPGDILLLDDGRVQLKVLEVQGVK-VFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKADIITAAKINVDYLAVSFP 198
                 7899**************************************999.***************************************************** PP

                 -SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHT...HHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS-- CS
          PK 199 rkasDvkevrevleeegkeikiiakienqegven...ldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrpt 294
                 r ++D++++r+++ ++g ++ ++ak+e++e+v+    +d+i+ asD++mvarGDlG+ei++++++ +qk li++++++++++itatqm+esmi+nP+pt
  EHU00076.1 199 RCGEDMHYARRLARDAGCDALMVAKVERAEAVASqeaMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRTIITATQMMESMITNPMPT 297
                 ********************************87777************************************************************** PP

                 HHHHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHT CS
          PK 295 raevsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaeka 341
                 raev+DvanavlDGtDavmLs+eta+G+yP+e+v+ama+v+l aek 
  EHU00076.1 298 RAEVMDVANAVLDGTDAVMLSAETAAGQYPAETVAAMAKVCLGAEKI 344
                 ********************************************985 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.6   3.6e+03      50      70 ..     206     226 ..     174     259 .. 0.59
   2 !   97.7   0.1   8.2e-32   4.9e-28       1     117 []     363     477 ..     363     477 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.6
                 HHHHHHHCTTEEHHH.HHHHH CS
        PK_C  50 tarqlalyrGvypvlvekakt 70 
                  ar+la   G+ +++v+k + 
  EHU00076.1 206 YARRLARDAGCDALMVAKVER 226
                 466666666666665554333 PP

  == domain 2  score: 97.7 bits;  conditional E-value: 8.2e-32
                 HHHHHHHHHHHHHH.T-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEE CS
        PK_C   1 eaiakaaveaaeel.gakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevv 98 
                 eaia++a+++a++l g+ aI+++tesG+t+++ s++ +++pi+a++++e+t +  alyrGv+pv ++++   e + +   +av+ + ++g++ +gd+vv
  EHU00076.1 363 EAIAMSAMYTANHLqGVTAIITMTESGRTPLMTSRITSGLPIFAMSRHERTLNITALYRGVTPVFFDSD--NEGVAT-AHDAVNLLRDKGFLVSGDLVV 458
                 89************99*************************************************9975..346666.6789***************** PP

                 EEE-SSSS..SS--EEEEE CS
        PK_C  99 vtaGtpkgesgttNtlrVv 117
                 vt+G+ +g  gttNt rV+
  EHU00076.1 459 VTQGDVMGAIGTTNTGRVL 477
                 ***************9995 PP

>> DUF2737  Protein of unknown function (DUF2737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   5.2e-05      0.31       3      31 ..     273     302 ..     271     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.2e-05
     DUF2737   3 rlaaNyliltvelkidrKik.PmPsREELl 31 
                   + N  i+t+   ++  i+ PmP+R E +
  EHU00076.1 273 ARQLNRTIITATQMMESMITnPMPTRAEVM 302
                 568999*****9999999866*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3531.27
//
Query:       EHU00077.1  [L=48]
Description: hypothetical protein CKS_1814 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 377.19
//
Query:       EHU00078.1  [L=491]
Description: glucose-6-phosphate 1-dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-118  394.6   0.0   3.1e-118  394.2   0.0    1.2  1  G6PD_C        Glucose-6-phosphate dehydrogenase, C-terminal d
    1.6e-58  198.2   0.0    2.8e-58  197.4   0.0    1.4  1  G6PD_N        Glucose-6-phosphate dehydrogenase, NAD binding 
      0.007   17.2   0.0      0.014   16.3   0.0    1.4  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.2   0.0  5.1e-122  3.1e-118       1     290 []     188     488 ..     188     488 .. 0.97

  Alignments for each domain:
  == domain 1  score: 394.2 bits;  conditional E-value: 5.1e-122
                 HHHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEE CS
      G6PD_C   1 lvlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrG 99 
                 l+lRfaN++f + w++++idhvqitv+e++g+egr+gY+d+aG +rD++qnHllq+l+++am pP++l+a++irdekvkvL+slrp+++++v++k+vrG
  EHU00078.1 188 LALRFANSIFVNNWDNRTIDHVQITVAEEVGIEGRWGYFDKAGQMRDMIQNHLLQVLTMIAMSPPSDLSADSIRDEKVKVLRSLRPIDQTNVREKTVRG 286
                 68************************************************************************************************* PP

                 EE.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS---......--EEEEEEESS-EEEE CS
      G6PD_C 100 qYaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlfkkke.....rneLviriqpdeaisl 193
                 qY+ag v+gk+v+gY+eeeg +k+S+teTfva+++ idn+rwagVPfylrtGKrL++k +e+++ fk+++++lfk+ +     +n+L+ir+qpde++ +
  EHU00078.1 287 QYTAGFVQGKKVPGYLEEEGANKTSSTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKNPEMNLFKD-SyselpQNKLTIRLQPDEGVDI 384
                 **************************************************************************33.236799**************** PP

                 EEEEE-SSS..E.....EEEEEEHHHHTT...---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH..---EEEETTSSS-HHHHHHHHHH CS
      G6PD_C 194 klnakkpgl..eleleeveldlsykerfk...lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee..eklekYeagsrgPeeadellekd 285
                 ++ +k+pgl  + +l++++ldlsy+e+f+   l +aYerLll+ ++g q+lFvr+deveaaW++vd+i++aw++  ++ ++Y+ag++gP ++ +++++d
  EHU00078.1 385 EILNKVPGLdhKHKLQTTKLDLSYSETFNqshLADAYERLLLESMRGIQALFVRRDEVEAAWTYVDSIINAWAAdgDSSKPYQAGTWGPVASVAMITRD 483
                 ********9887899************99999999*************************************88**889******************** PP

                 TX.X. CS
      G6PD_C 286 grkwr 290
                 gr+w+
  EHU00078.1 484 GRSWN 488
                 ****5 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   4.7e-62   2.8e-58       1     177 []      13     186 ..      13     186 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.4 bits;  conditional E-value: 4.7e-62
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 vifGa+GdLa+rkllP+Ly+l ++g+++ee+ri+gv+r +++++e+++ v+eal++   ke++de+ ++++ +rl+++++d+++++++ +L ++l++++
  EHU00078.1  13 VIFGAKGDLARRKLLPSLYQLEKAGQIHEETRIIGVGRAEWDKAEYTKVVREALETFM-KEKIDEALWDKLSNRLDFCNLDVNDTSHFPRLGKMLDQKN 110
                 8*****************************************************8766.4559**********************************9* PP

      G6PD_N 100 anrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                 ++++ Y+a+pps+f+++++ l+ a+l++  + +rvv+EKP+G++le+++e+n++++++f+e+q++rIDhYLGketv N
  EHU00078.1 111 RTTINYFAMPPSTFGAICQGLGMAKLNA--KPARVVMEKPLGTSLETSKEINDSVGEYFDESQVFRIDHYLGKETVLN 186
                 **************************97..678*******************************************98 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.3e-06     0.014       5     107 ..      45     161 ..      42     168 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
                   EETTSHH......HHHHHHHHHHTTTTEEEE.EEECSSHHHHHHH.HHHTTHEEESSHHHHHTCT.TESEEEE-S-GGG....HHHHHHHHHHTT-. CS
  GFO_IDH_MocA   5 iiGaGki......gskhlrplnesqrleevv.alldpdaeraeav.aesfgveaysdleelladp.eidavivatpngt....heelakaaleagk. 87 
                   iiG+G++       +k +r   e++ +e++  al+d+ ++r + +  +  + + +  l ++l+++ +  + + a+p++t     + l +a l+a++ 
    EHU00078.1  45 IIGVGRAewdkaeYTKVVREALETFMKEKIDeALWDKLSNRLDFCnLDVNDTSHFPRLGKMLDQKnRTTINYFAMPPSTfgaiCQGLGMAKLNAKPa 141
                   899999988633323334445555555577527888888888887444445559999999999998899999*****77555577788899999999 PP

                   EEEEESSS-SSHHHHHHHHH CS
  GFO_IDH_MocA  88 hvllEKPlattveeakelve 107
                    v++EKPl t++e  ke+ +
    EHU00078.1 142 RVVMEKPLGTSLETSKEIND 161
                   **************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3827.34
//
Query:       EHU00079.1  [L=212]
Description: 2-dehydro-3-deoxyphosphogluconate aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-91  303.2   1.0    6.9e-91  303.0   1.0    1.0  1  Aldolase   KDPG and KHG aldolase
  ------ inclusion threshold ------
       0.04   13.5   0.2      0.056   13.0   0.2    1.2  1  HMGL-like  HMGL-like


Domain annotation for each model (and alignments):
>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.0   1.0   7.7e-95   6.9e-91       2     196 .]       9     203 ..       8     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 303.0 bits;  conditional E-value: 7.7e-95
                 HHHHHCHSEEEEE--SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHH-TTSEEEEES--SHHHHHHHHHCT-SEEEESS--HHHHHHHHHT CS
    Aldolase   2 esilkeakvvpvivikdkedalplaeaLvagGlrvlevtlrteaaldairvlrkerpdllvgaGtvlnaeqlaeakeaGaqfvvsPGltadllkaavdl 100
                 e+ilk+++vvpviv+++ e+a+p+a+aLvagG+rvlevtlrt+ a+da+r+++k++p+++vgaGtvln++ql+e++eaGaqfv+sPG+t+ llkaav+ 
  EHU00079.1   9 EQILKTGPVVPVIVVNKLEHAVPMAQALVAGGVRVLEVTLRTPVAMDALRAIIKQVPEAIVGAGTVLNTQQLQEVTEAGAQFVISPGITESLLKAAVEG 107
                 689************************************************************************************************ PP

                 TS-EEEEESSHHHHHHHHHTT--EEEETTTTTTTHHHHHHHHCTTTTT-EEEEBSS--TTTHHHHHTSTTBS-EEESCCC-HHHHHTT-HHHHHHH CS
    Aldolase 101 kipllPGvstpseimlaldlGlkrlklfPaeasGGvkalkalagpfaqvrfiPtGGispanvrdylalpsvlvvgGswlveaslikkedldkitkl 196
                  +pl+PG+st+se+m ++d+Gl+++k+fPaea+GGvkal+a++gpf+qvrf+PtGGispan+rdylal++vl++gGswlv+ ++++++d+++it+l
  EHU00079.1 108 PVPLIPGISTVSELMTGMDYGLREFKFFPAEANGGVKALQAIGGPFPQVRFCPTGGISPANYRDYLALKNVLCIGGSWLVPNEALEAGDWQRITQL 203
                 *********************************************************************************************986 PP

>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   6.3e-06     0.056      22      90 ..      26      88 ..      21     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.3e-06
                HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT- CS
   HMGL-like 22 veeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgaga 90
                +e+ +++a+aL++ gv+++Ev+ +      ++++rai+k+v++a + a   ++ ++++   e    aga
  EHU00079.1 26 LEHAVPMAQALVAGGVRVLEVTLRTPV--AMDALRAIIKQVPEAIVGAGTVLNTQQLQEVTE----AGA 88
                577889***************998766..99**********999555555556666666666....555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1646.05
//
Query:       EHU00080.1  [L=392]
Description: phosphoribosylglycinamide formyltransferase 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-56  191.2   0.0    1.6e-56  190.6   0.0    1.2  1  ATP-grasp        ATP-grasp domain
    4.8e-07   29.5   0.0    8.9e-07   28.6   0.0    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.5e-05   24.7   0.0    5.9e-05   22.7   0.0    1.9  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      2e-05   24.2   0.0    5.6e-05   22.7   0.0    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
      6e-05   23.1   0.0    0.00019   21.5   0.0    1.8  1  ATP-grasp_3      ATP-grasp domain
    0.00014   21.3   0.0    0.00024   20.5   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.025   14.8   1.0      0.066   13.4   1.0    1.7  1  LAL_C2           L-amino acid ligase C-terminal domain 2
      0.042   12.9   0.1      0.069   12.2   0.1    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
       0.12   12.0   0.0       0.24   11.0   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.0     8e-60   1.6e-56       2     171 .]     123     295 ..     122     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 8e-60
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC......GTTCEEEEE----SEEEEEEEEEETTC-EEE-- CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal......keekvivEefvpfekElsvlvvrsaeGetafyp 94 
                 e+l lp++++ +++ske++ +aa+ +g+p++vK ++++++GkGqs++r++++l++a++++      ++++vivE +v+f++E+++l++r+++G ++f++
  EHU00080.1 123 EELALPTSTYRFADSKENFVAAAAGIGFPCIVK-PVMSSSGKGQSFIRDASQLDKAWDYAqqggraGAGRVIVEGVVKFDFEITLLTIRAVDG-IHFCA 219
                 6899*****************************.**************************99999999*************************.***** PP

                 EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS--GGGGGHHHHB CS
   ATP-grasp  95 vvetvqedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapRpHnsGhvtldaa 171
                 ++++ qedg++r+s++p+++s+ a+k+a++ia+++v++Lgg+G+f+vElFv+  g+ ++++E++pRpH++G+vtl ++
  EHU00080.1 220 PIGHRQEDGDYRESWQPQQMSDLALKRAQHIAETVVNALGGYGLFGVELFVC--GDeVVFSEVSPRPHDTGMVTLISQ 295
                 ****************************************************..555******************875 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.5e-10   8.9e-07      15      89 ..     126     198 ..     114     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.5e-10
                  BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE-- CS
  CPSase_L_D2  15 pvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlveksl 89 
                   +  s+ + +++ e+ +a+a+ ig+P+i+k+ ++  GkG  ++r+ ++l ++   a++  +   g  +v ve  +
   EHU00080.1 126 ALPTSTYRFADSKENFVAAAAGIGFPCIVKPVMSSSGKGQSFIRDASQLDKAWDYAQQGGR--AGAGRVIVEGVV 198
                  455667777899******************************************9999886..567777777665 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     3e-08   5.9e-05      23     177 ..     136     285 ..     115     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3e-08
                      -H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-S....CEEEEE--ESEEEEEEEEE.TSSCEEEEEEEEE-SSSSS CS
  Dala_Dala_lig_C  23 ekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyde....kvlvEeaiegreievavlg.neklevsevgeivvkkgfy 111
                      ++ke + +  + +g+p++VKp+ + S  G s ++ +++l +a + a +  +    +v+vE +++  ++e+++l       ++ +  i  +++  
       EHU00080.1 136 DSKENFVAAAAGIGFPCIVKPVMSSSGKGQSFIRDASQLDKAWDYAQQGGRagagRVIVEGVVKF-DFEITLLTiRAVDGIHFCAPIGHRQEDG 228
                      4456677778999*********************************9975433338****99975.6888888721222333344444444444 PP

                      -HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS-- CS
  Dala_Dala_lig_C 112 dyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPG 177
                      dy + +         p ++++   ++ q++a  + +al++ Gl  v +f+   +e+v++Ev + P 
       EHU00080.1 229 DYRESW--------QPQQMSDLALKRAQHIAETVVNALGGYGLFGVELFVC-GDEVVFSEVSPRPH 285
                      666666........488888888999999999999***************8.789999**999884 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.8e-08   5.6e-05       6      70 ..      19      81 ..      16      91 .. 0.89
   2 ?   -2.4   0.0       1.4   2.7e+03     116     177 ..     274     336 ..     244     342 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.8e-08
                TTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE CS
   Epimerase  6 atGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavih 70
                ++G +G+ ++ ++++ g+evi++dr+ +a +    +  + + ++++d++al++++++e+pd v+ 
  EHU00080.1 19 GSGELGKEVALECQRLGVEVIAVDRYANAPAMHVAH--RSHVINMLDGDALAAVIAQEKPDFVVP 81
                57999*********************7777766555..99***********************85 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                 GGGGTSCSSSSBSTCSTTS--..--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT.S CS
   Epimerase 116 sevYGkdaeqpkeettltgpl..kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr.n 177
                   v+ ++ + p +  + t  l  +  s +a++ +a+  l   + +qyg +a +++l  l + + +
  EHU00080.1 274 EVVFSEVSPRPHDTGMVT--LisQDLSEFALHVRAFLGLPVGAIRQYGPSASAVILPQLTSQNvR 336
                 555555555552222222..224777778888888888888888888888888888888877754 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.6e-08   0.00019      30     159 ..     140     285 ..     114     287 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.6e-08
                  -........SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEE CS
  ATP-grasp_3  30 e........ekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaGnvt 110
                  +          +++vKp+ ++ g++ +++++  ++++a ++ +         ++ e +   ++ ++ll     v  + ++  +  +++++  y+ +  
   EHU00080.1 140 NfvaaaagiGFPCIVKPVMSSSGKGQSFIRDASQLDKAWDYAQqggragagrVIVEGVVKFDFEITLLT-IRAVDGIHFCAPIG-HRQEDGDYRESWQ 235
                  344555555789****************************9999*****99966666666778888887.56788888887655.6677799999999 PP

                  S----H..HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3 111 pietel..keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRlt 159
                  p ++++   ++++++ae vv++l g  G++Gv+l +  +e ++ Ev PR+ 
   EHU00080.1 236 PQQMSDlaLKRAQHIAETVVNAL-GGYGLFGVELFVCGDEVVFSEVSPRPH 285
                  99998877899************.**********99999**********85 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-07   0.00024      36      76 ..      12      52 ..       4     113 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.2e-07
                  TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHH CS
  2-Hacid_dh_C 36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.eee 76
                    +v ++G G++G++va  ++ +g++via+dr+ ++ + +  
    EHU00080.1 12 ATRVMLLGSGELGKEVALECQRLGVEVIAVDRYANAPAmH-V 52
                  578999***************************9976632.2 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0   3.3e-05     0.066      45      75 ..     360     390 ..     355     391 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
      LAL_C2  45 sgdrlGyviatgdtaeeaeaaaeeaaaeiri 75 
                 +  rlG  +a+++t eea+a+a + aa++ +
  EHU00080.1 360 GQRRLGVALACAETTEEAVARAVASAAAVSV 390
                 678*********************9999987 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.5e-05     0.069       3      56 ..      15      80 ..      13     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............T--TTSHHHHHHHHHHH--SEEE CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre.............eldltdaeavaellkeakpdvvv 56
                   ++++G +G lG+e+a + ++ g+ev+a++r               +++ d +a+a+++++ kpd+vv
     EHU00080.1 15 VMLLG-SGELGKEVALECQRLGVEVIAVDRYanapamhvahrshVINMLDGDALAAVIAQEKPDFVV 80
                   66666.69*********************999**********9999******************998 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.24       1      33 [.     148     180 ..     148     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  ATP-grasp_4   1 islPvviKPsvgffSlGVykinneeewkaavaa 33 
                  i +P+++KP++ ++  G ++i++++++++a + 
   EHU00080.1 148 IGFPCIVKPVMSSSGKGQSFIRDASQLDKAWDY 180
                  579*************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3233.17
//
Query:       EHU00081.1  [L=214]
Description: uncharacterized DUF533 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-50  170.2   0.6    3.8e-50  169.9   0.6    1.0  1  DUF533        Protein of unknown function (DUF533)
     0.0025   17.8   0.7      0.005   16.8   0.5    1.6  1  TerB          Tellurite resistance protein TerB
  ------ inclusion threshold ------
      0.039   14.1   0.0      0.069   13.3   0.0    1.5  1  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)


Domain annotation for each model (and alignments):
>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   0.6   6.4e-54   3.8e-50       3     178 ..      29     207 ..      27     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 6.4e-54
      DUF533   3 gggaaaggllglllGskkgr....klgkkalklGglAalGglAykayqnwqanqqeaapqsapkf.q.e.eeeekaelllrAmiaAAkADGhideeErq 94 
                 ++++a+ggl+gll++sk++r    k+g+kal +Gg Aa G++ +++y++      +++ q +p f + +   +++ae+l++A++ AAk+DGhid++Er+
  EHU00081.1  29 LAPGALGGLAGLLVASKSSRklltKYGGKALIIGGGAAAGAVLWNKYKQR----VRETHQDEPGFgElQtPVDQRAERLVTALVFAAKSDGHIDDRERA 123
                 67889*************8888889***********************43....2233444455544434789************************** PP

      DUF533  95 rIlqeleelgldaeekalledeLrkPldlqelaaavknpelaaevYlaSllaidedsaaEraYLdeLaqaLgLdpelvaeleaq 178
                 +I+q+++++   +++++l+++++++Pld++ laa+vkn+e+a e+Y++S++aid+d+++Er+YL++L +aL++++++++ ++++
  EHU00081.1 124 TIEQNIHQACYGQDAEKLIQQAMQRPLDPEWLAADVKNEEEALELYFLSCAAIDVDHFMERSYLSALGDALKIPQDVRKGIQQD 207
                 ********************************************************************************9987 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   8.3e-07     0.005      13      76 ..      88     147 ..      75     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.3e-07
        TerB  13 aagaektdaakeafalalaallaevakaDgqvsesErqafrellksrfglspeeakallelfee 76 
                  +g+ +t+ +  + a+ l++ l+  ak+Dg ++++Er+ +++ +  + +   ++a++l++++ +
  EHU00081.1  88 GFGELQTPVD--QRAERLVTALVFAAKSDGHIDDRERATIEQNI--HQACYGQDAEKLIQQAMQ 147
                 4555555555..67888888999999999999999999999999..445558888888888876 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.069       3      93 ..      55     146 ..      53     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                   XXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHH.HHHHHHHHH.S.TSS-HHHHHHHHH CS
  Spore_III_AB   3 igallillactgiGfalakrlkrrlkeleelkralellegeirygatpLpealeklaeksesplsef.feevaerleek.egesfeeaweeav 93 
                    g +li+ +++++G  l +++k+r++e  + +  +  l++ +  +a+ L  al   a ks++ + +   +++ +++ +   g+++e+++++a+
    EHU00081.1  55 GGKALIIGGGAAAGAVLWNKYKQRVRETHQDEPGFGELQTPVDQRAERLVTALVFAA-KSDGHIDDReRATIEQNIHQAcYGQDAEKLIQQAM 146
                   5789************************99999999999999999999988776666.33332222212222222222224444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1602.19
//
Query:       EHU00082.1  [L=252]
Description: protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-63  214.6   6.1    2.5e-63  214.3   6.1    1.0  1  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
  ------ inclusion threshold ------
      0.038   13.9   0.0       0.13   12.3   0.1    1.9  2  PD40            WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.3   6.1   2.8e-67   2.5e-63       4     242 ..       7     237 ..       4     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 214.3 bits;  conditional E-value: 2.8e-67
                     ---TT.EEEETTEEEE-TTGGGGSTTSHHHH..HHHHHHHHHHHHHHCTST.CHHHHHHHHHHHT-S-EE---EEETTEEEEEEE-SS-SS-EEE CS
  Peptidase_S9_N   4 ardesvvdelhgdkvsDpYrWLeDddspetk..ayleaenkyteevlaqlkelrekikeeitklikeddisapfrkgkyyyysrneggknqsvly 96 
                     ++ +   ++lhg++++D+Y+WL+Dd++++ +  +yl+aen+y ++++a+ ++l+++i  ei+++++ +d s+p+ k++y y sr e+g +++ +y
      EHU00082.1   7 KKIPY-EMSLHGETRVDNYYWLRDDKRENSDvlDYLRAENNYGQKIMASQEPLQNRILHEIIDRLPPQDHSVPYVKNGYRYQSRYESGNEYAAYY 100
                     44444.6799******************99999************************************************************** PP

                     EECSTS-TTS-EEEEE-GGGGSTTS-.EEEEEEEE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEESS- CS
  Peptidase_S9_N  97 rqdalskegeeeevlLDpNtlsedgtfvalgefavsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsgivWaadekgffYtrydk 191
                     rq+a+++e +e+ +lLD N+ +++ +f+ +g++ +s+d++ +A ++++ ++++y ir++++e+g ++p++l+d+++s ++Wa+d+++++Y+r+++
      EHU00082.1 101 RQPASYQETDEWTLLLDANQRASHSDFYTMGALHISPDNQVMALAEDFLSRRQYGIRFRNLENGSWYPEVLNDASSS-FAWANDSRTLYYVRKHP 194
                     *****************************************************************************.***************** PP

                     SSS-TSTSB-S-BEEEEEETTS-GGG-EEEES-TTGTTBEEEEEE-TTSSE CS
  Peptidase_S9_N 192 edersdtdtnlnqkvyrhkLGtaqseDelvfeeeeepkwllgaersedgky 242
                     ++  s+       +++rh+LGt+qs+D+lv+e e+++++ l++++++++ +
      EHU00082.1 195 QTLLSY-------QLWRHELGTPQSDDQLVYE-EKDDTFHLSIHKTTSKVS 237
                     ******.......*******************.************999765 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.81   7.3e+03      16      24 ..     135     143 ..     135     143 .. 0.77
   2 ?   12.3   0.1   1.4e-05      0.13      13      38 .]     177     204 ..     172     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.81
                 E-TTSSEEE CS
        PD40  16 fSPDGkrla 24 
                 +SPD + +a
  EHU00082.1 135 ISPDNQVMA 143
                 69**88765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.4e-05
                 EEEE-TTSSEEEEEEECT...TCEEEEE CS
        PD40  13 aPsfSPDGkrlaFsSdRg..sGkpdIyv 38 
                 ++++ +D ++l++++  +  + ++++++
  EHU00082.1 177 SFAWANDSRTLYYVRKHPqtLLSYQLWR 204
                 78**************999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2240.84
//
Query:       EHU00083.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00083.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00083.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00083.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00083.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 827.30
//
Query:       EHU00084.1  [L=41]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   34.0   0.0    2.2e-08   33.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.2e-12   2.2e-08       2      34 ..       9      41 .]       8      41 .] 0.96

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.2e-12
   TnpB_IS66  2 riylatgpvDmRkgidgLaalVqeelkldpfsg 34
                ri+l++g +DmR+g++gLa  Vq++l+ dpfsg
  EHU00084.1  9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSG 41
                8******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       148  (0.00825478); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 369.78
//
Query:       EHU00085.1  [L=481]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-98  327.3   4.4      3e-97  325.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    1.3e-14   54.3   1.5    3.1e-14   53.1   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    7.4e-11   42.7   9.0    1.6e-10   41.6   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.025   13.8   0.7       0.05   12.8   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.029   14.3   0.4         19    5.2   0.0    3.1  3  UME              UME (NUC010) domain
      0.034   13.7   2.5      0.037   13.6   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.054   12.0   7.7      0.088   11.3   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.11   12.8   3.6       0.77   10.1   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   11.2   0.3       0.25   10.5   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.15   12.1  10.2       0.27   11.3  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.19   11.5  10.1       0.32   10.8  10.1    1.3  1  ERM              Ezrin/radixin/moesin family
       0.23   11.1   2.4       0.77    9.4   0.3    2.2  2  LXG              LXG domain of WXG superfamily
       0.31   11.2   1.7       0.92    9.7   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.31   11.4   4.1       0.79   10.1   2.6    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.39   11.1   3.2       0.87   10.0   3.2    1.6  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.43   10.3   7.3       0.69    9.7   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.68    9.1   2.7          1    8.5   2.7    1.2  1  TMPIT            TMPIT-like protein
        1.9    8.7   8.3       0.92    9.7   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.1    7.9   7.4        5.1    6.6   7.4    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.3    6.7   8.5         16    5.8   8.5    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        8.5    7.1   9.1         21    5.9   2.5    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.9       0.1        90     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  325.5   0.0  3.5e-100     3e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.1
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00085.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 325.5 bits;  conditional E-value: 3.5e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00085.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00085.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00085.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   1.5   3.6e-17   3.1e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 3.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00085.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   9.0   1.9e-13   1.6e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.9e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00085.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.7   5.9e-05      0.05      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00085.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.3     2e+03      26      52 ..      16      42 ..       9      62 .. 0.74
   2 ?    5.2   0.0     0.022        19      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.2   0.0     0.022        19       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
         UME 26 laekkraikaleeliklagssissalp 52
                l+e++ +i+ + e  +l++++++ ++ 
  EHU00085.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYAS 42
                678888888888888888888766554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.022
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00085.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 566555554.888888889999458***************8 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.022
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00085.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.9   4.4e-05     0.037     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.1   0.0       1.3   1.1e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00085.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00085.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444432 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.7    0.0001     0.088     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00085.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2    0.0009      0.77      22      56 ..      23      57 ..      10      71 .. 0.82
   2 ?    3.0   0.4      0.15   1.3e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0009
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU00085.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00085.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00029      0.25      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00085.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.2   0.00032      0.27      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00085.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  10.1   0.00037      0.32      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00085.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3    0.0009      0.77     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.5   0.2      0.24   2.1e+02      97     130 ..      63      96 ..      61     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0009
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU00085.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00085.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5677888888999999999999999999887655 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0011      0.92      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.3   0.1       1.4   1.2e+03       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00085.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00085.1 167 ACCSCDHI 174
                  35555555 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.6   0.00092      0.79       9      65 ..      24      76 ..      20      93 .. 0.80
   2 ?   -1.2   0.0       3.2   2.8e+03       5      18 ..     362     375 ..     355     379 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00092
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU00085.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU00085.1 362 TEALKRIGKLYAIE 375
                 47888888888776 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2     0.001      0.87      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU00085.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.3    0.0008      0.69     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0008
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00085.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.7    0.0012         1      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00085.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.2    0.0011      0.92      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.3   0.0       2.6   2.3e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU00085.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU00085.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00085.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.4     0.006       5.1      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.006
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00085.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.5     0.019        16      10      86 ..      15      95 ..      10     109 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.019
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a++++  + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU00085.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777788889999999999999999999999999999965555.23356666666668888888877544444555444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.5     0.024        21      22      53 ..      12      43 ..      10      68 .. 0.89
   2 ?    2.4   2.0       0.3   2.5e+02      34      57 ..      68      91 ..      43      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.024
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00085.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                667889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.3
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00085.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1367  (0.0762452); expected 358.6 (0.02)
Passed bias filter:                      932  (0.0519828); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.38
# Mc/sec: 3819.26
//
Query:       EHU00086.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00086.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 890.09
//
Query:       EHU00087.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00087.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00087.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00087.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00087.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 888.01
//
Query:       EHU00088.1  [L=208]
Description: hypothetical protein CKS_2355 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-22   78.6  21.2    4.9e-22   78.3  21.2    1.0  1  LysE           LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3  21.2   2.7e-26   4.9e-22       4     191 ..      18     205 ..      16     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.7e-26
        LysE   4 llspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpflk 102
                 ++ pGp +++++++ ++ g  +g+++++gv++gd+++++l+++Gla++ +++  +++++ ++ ++yL++l+++ +  +  +  + +k + ++l +  l+
  EHU00088.1  18 AAIPGPGMTAIVARTLNGGSLAGFAALAGVIMGDLFYLTLAVFGLAVVAHTYTGLFTLINWAAALYLAFLAWQFWSYQPHSITLDQKVTHKQLTSAWLS 116
                 578***************************************************************************9999999999999******** PP

        LysE 103 glllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarls..rrlsskkvlriinvvvgvlligfavklll 191
                 gl ++l NPk+i f+l++++ +++   ++ +  ++++ ++ v a ++ ++   f+ a++s  + l s++++ri+ + vgv++++ a+ ++l
  EHU00088.1 117 GLTITLGNPKTIAFYLAILPLVISL--ESISLTFWAARLVPVTAAVLLMVGAMFILATVSvrALLTSQRAQRIMFKSVGVIMLLAAIGMIL 205
                 ************************3..55555566666665666665555555555555511456788889*************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 1823.01
//
Query:       EHU00089.1  [L=215]
Description: TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-38  129.8   0.3    9.7e-38  128.9   0.3    1.4  1  TetR_C_29    Tetracyclin repressor-like, C-terminal domain
    5.6e-10   38.8   0.1    8.9e-10   38.2   0.1    1.3  1  TetR_N       Bacterial regulatory proteins, tetR family
    0.00039   20.5   0.0    0.00068   19.7   0.0    1.5  1  TetR_C_21    Tetracyclin repressor-like, C-terminal domain
     0.0018   18.4   0.1     0.0028   17.8   0.1    1.5  1  TetR_C_4     YsiA-like protein, C-terminal region
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.035   14.4   0.0    1.8  1  TetR_C_24    Tetracyclin repressor-like, C-terminal domain
      0.029   15.1   0.0      0.078   13.7   0.0    1.7  1  TetR_C_15    Tetracyclin repressor-like, C-terminal domain
      0.087   11.9   0.0       0.12   11.5   0.0    1.1  1  Pro-rich_19  Proline-rich 19
       0.12   12.7   0.1        0.3   11.5   0.1    1.6  1  SporV_AA     Stage V sporulation protein AA


Domain annotation for each model (and alignments):
>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.3   4.3e-41   9.7e-38       1     117 [.      86     202 ..      86     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 4.3e-41
                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHHHHHHTHHHHHHHH- CS
   TetR_C_29   1 PvealrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcffrvsnrhtlsalfg 99 
                 P++a+ +lve+ fdyh ++p+fvrL+++Enl rgr++++s ++++ln+++++ l++il rGq++g+F ++++ ld++ liss+c+++vsnr t+++lf 
  EHU00089.1  86 PEQAIIKLVEASFDYHVSHPDFVRLICMENLSRGRYISQSARLSQLNRSALDLLDDILSRGQQQGLFIKEIETLDVHRLISSICVHQVSNRFTFNTLFS 184
                 99************************************************************************************************* PP

                 --TTSHHHHHHHHHHHHH CS
   TetR_C_29 100 rdlsspealerrralivd 117
                 rd +++e  +r r+l+v 
  EHU00089.1 185 RDKNEDEIIRRNRQLAVT 202
                 *************99985 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1     4e-13   8.9e-10       1      45 [.      18      62 ..      18      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4e-13
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                Il+ A+  fae G++++ +++IA+ A+++k+ + ++F++Ke+L+ 
  EHU00089.1 18 ILASALTTFAEFGMQGARLEQIAENAQTTKRMVVYHFGNKEQLYI 62
                99*****************************************86 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.1e-07   0.00068       6      87 ..      94     180 ..      90     206 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.1e-07
   TetR_C_21   6 agrlydallahPellRLltWarLeraeeeleeee...eraesleekvaa.iraaQraGtvdaswkpedlltlvlalasawaaapa..r 87 
                 +++ +d++++hP+++RL+  ++L r+ + +++ +   + ++s  + ++  ++++Q++G   ++++  d+  l+ ++    +++    +
  EHU00089.1  94 VEASFDYHVSHPDFVRLICMENLSRG-RYISQSArlsQLNRSALDLLDDiLSRGQQQGLFIKEIETLDVHRLISSICVHQVSNRFtfN 180
                 6789*********************9.44444440003333433444431579*****************999999888877766532 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.2e-06    0.0028      59     108 ..     125     174 ..      62     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSC-TT--HHHHHHHHHHHHHHHHH CS
    TetR_C_4  59 rlkinevlkgyltlldeiiaeGkekGefkeeldvrlarqlifGtldevvt 108
                   +++++ ++ l lld+i+  G+++G f +e+++  +++li  +  + v+
  EHU00089.1 125 SARLSQLNRSALDLLDDILSRGQQQGLFIKEIETLDVHRLISSICVHQVS 174
                 4688999999*************************999999776655555 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.035       4      85 ..      86     170 ..      83     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-H....HHHHHHHHHHHHHHHHHHHHHHHHHHTTSB.-SS-HHHHHHHHHHHHH CS
   TetR_C_24   4 paerLralvrahveviaeereeaavllrelraLsp....ehreeiralrreyerllrdlieeGvaagef.edldpklaalailgmln 85 
                 p++ + +lv+a  ++++++++ ++++  e  +Ls      + +++ +l r   +ll+d++ +G+++g f ++ ++  + ++i +++ 
  EHU00089.1  86 PEQAIIKLVEASFDYHVSHPDFVRLICME--NLSRgryiSQSARLSQLNRSALDLLDDILSRGQQQGLFiKEIETLDVHRLISSICV 170
                 6677778999*************999988..555411225678999***********************999988888888888775 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.5e-05     0.078       3      51 ..      87     136 ..      86     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
   TetR_C_15   3 eealdalvdallaahrenpalrrvlleeapslgel.elvealeqriaeal 51 
                 e+a+ +lv+a +++h ++p++ r++  e  s g++   +++l+q  ++al
  EHU00089.1  87 EQAIIKLVEASFDYHVSHPDFVRLICMENLSRGRYiSQSARLSQLNRSAL 136
                 79999********************9999999999888888888776665 PP

>> Pro-rich_19  Proline-rich 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.4e-05      0.12      75     107 ..     143     176 ..     138     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.4e-05
  Pro-rich_19  75 lsr.ehrGlfnhevksldvarllssgslevstpa 107
                  lsr + +Glf +e+ +ldv rl+ss  + + +  
   EHU00089.1 143 LSRgQQQGLFIKEIETLDVHRLISSICVHQVSNR 176
                  6663568*****************9987766654 PP

>> SporV_AA  Stage V sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00013       0.3      36      86 ..      44      93 ..      36      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
    SporV_AA 36 kklkaikvykikekkkkrvvisvlkvieaIkkeypnvevenlGetdfivey 86
                +  k+++vy++  +k++ ++    +v ++I+++  +++  +l +++ i+++
  EHU00089.1 44 QTTKRMVVYHFG-NKEQLYIDALEQVYQQIREHETGLNLASLAPEQAIIKL 93
                67899******6.888888888889***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1601.96
//
Query:       EHU00090.1  [L=460]
Description: FAD-dependent oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-42  146.6   0.1    1.8e-42  145.9   0.1    1.3  1  ALO             D-arabinono-1,4-lactone oxidase
    2.9e-15   56.2   0.0    5.7e-15   55.3   0.0    1.4  1  FAD_binding_4   FAD binding domain
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.049   13.8   0.0    1.5  1  Polyketide_cyc  Polyketide cyclase / dehydrase and lipid tran
       0.06   13.4   0.6       0.12   12.4   0.6    1.6  1  YbjN            Putative bacterial sensory transduction regul


Domain annotation for each model (and alignments):
>> ALO  D-arabinono-1,4-lactone oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.1   4.1e-46   1.8e-42       1     258 [.     189     456 ..     189     458 .. 0.86

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 4.1e-46
         ALO   1 vtlrvvpaftlkskqevikfetllenwdellkssefirvwwfPytekavvwrankteepe.........eskprkslkdellgrlvyeallalsrifps 90 
                 vtlr+ p    +++++v + ++l +++  + ++    ++wwf   + ++vw+a++++ +e         e    +   d+ l+ ++ ++l ++ r    
  EHU00090.1 189 VTLRTQPFRIFTCHKNVVSADNLESDLLRWNEDYALSKAWWFVDDNIMHVWNAHQASYDEiqryeqsgrEVVEHADEGDDSLNDTIEQTLEHMHRDTQI 287
                 8*******************************************************9999666654433222222233455666666666666644444 PP

         ALO  91 ltplverfvfklqyg......kgdeavqdsyevfnmdclvsqfvnEwaiplekgpevLrelkaliekaaelkvhfPievRcsnadrplLsvtndrdtly 183
                   +  ++f               +++++d+y+ f+  + v+q++ E ++pl  +p+++ ++k ++++++   +h+Pi +Rc+ a+ ++Ls++ d++t++
  EHU00090.1 288 HGKGGKQF------RtvtrfrDFTDVTGDIYQLFCRGIAVPQINVEIGVPLARTPAIISKIKRWYAENR-PHMHYPIILRCTGASSAWLSPAFDQPTCF 379
                 44444444......03333336899********************************************.***************************** PP

         ALO 184 inatmYrpfetnvp..tekyfkafedimkkagGrPHWaKnflltaedlkelYpdlkkflkvRkklDPegvFlnewle 258
                  ++++Y + + +      ++  ++e+++++ gGrPHW+K++  +  + ++lYp++++f+++R++lDP+  F n+++ 
  EHU00090.1 380 FGFVVYYADDGSLSeaGLHFLSEVEKLLAEEGGRPHWGKYYDASLYHWRDLYPHWDRFRALREQLDPHHHFSNDYTA 456
                 *********999887788999*****************************************************975 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.3e-18   5.7e-15       4     139 .]      37     167 ..      35     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.3e-18
                    EEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGS CS
  FAD_binding_4   4 vvrpeseeevaaalrlaneaglpvlvrGgGssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipg 98 
                    v rp++e+ ++ +lr  +    +v+v+G+  s +   av+ ++++ldls+++++l  d  ++ +t+ + ++l++++  l    ++l   pg ++ +
     EHU00090.1  37 VKRPANEAALQQLLRDTH---NTVRVIGKTYSPGrMLAVHPDDLLLDLSAFTGLLRSD--AHSVTFAGATPLEQIYSTLTDMDRMLASSPGVISVQ 127
                    678999999999999655...689**********88899*********99***99999..8*********************************** PP

                    BHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  99 tvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                    t++Ga+at+++G+g +++ +i+d  ++ ++vl+dG++++ls
     EHU00090.1 128 TLAGAMATGTHGQGLQQS-SIADEAEQIRLVLSDGSIRELS 167
                    ************999999.******************9986 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.049       4     103 ..     102     224 ..     100     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                     -HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEEEEEEEEEEETTT............................EEECTT CS
  Polyketide_cyc   4 padqvyalvadvesypeflphcssvevleeaesglsadlevgfggltesftarvtldppee............................itfklv 70 
                     p++q+y+ ++d +++   +p++ sv+ l+ a +    ++++g+g ++ s  +++++ +                               ++++l+
      EHU00090.1 102 PLEQIYSTLTDMDRMLASSPGVISVQTLAGAMA----TGTHGQGLQQSSIADEAEQIRLVLsdgsirelsrgdddfaaalvslgtlgivTEVTLR 192
                     99******************************4....8888888888888888755555547777777777777777777777777777777777 PP

                     CCCCCEEEEEEEECTECCEEECEEEEEEEEEEE CS
  Polyketide_cyc  71 egdfkslegkWtieslppnsggtrtkvalevdf 103
                       +f+ +  + +++s + n  ++ +++  ++ +
      EHU00090.1 193 TQPFRIFTCHKNVVSAD-NLESDLLRWNEDYAL 224
                     77777776666666666.444555555555555 PP

>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   2.6e-05      0.12       3     119 ..     152     261 ..     150     283 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHH--S-EEEEETTEE.EEEEEETTEEEEEEE--SSTT-EEEEEEEEES--TTHHHHHHHHHHHTTTTTTT-EEEEETTEEEEEEEEE-.TT CS
        YbjN   3 dlleevLeeagleyertedddgaivvvgtwggyrftiallgeseelllvlafvarvpeedreallellnrwNrellfgkayldedgdvlvehdldldag 101
                 ++++ vL +  ++   ++ddd+a    ++ g+  ++  ++  +   + ++ f ++++    + l   l+rwN+++ + ka +  d+ ++ ++    ++ 
  EHU00090.1 152 EQIRLVLSDGSIRELSRGDDDFA-AALVSLGTLGIVTEVTLRT---QPFRIFTCHKNVVSADNLESDLLRWNEDYALSKAWWFVDDNIMHVWN---AHQ 243
                 56666666666664444444444.3333333333333333333...34999*******************************99*99965444...477 PP

                 --HHHHHHHHHHHHHHHH CS
        YbjN 102 ltpeqldrllalvleaad 119
                 ++ ++++r+ + + e ++
  EHU00090.1 244 ASYDEIQRYEQSGREVVE 261
                 777777777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3634.20
//
Query:       EHU00091.1  [L=102]
Description: glycosyl transferase, family 8 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00013   21.6   0.0    0.00016   21.4   0.0    1.1  1  Glyco_transf_8  Glycosyl transferase family 8


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   8.8e-09   0.00016       2     112 ..       5     101 ..       4     102 .] 0.82

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 8.8e-09
  Glyco_transf_8   2 ialaldknYllgasvviksllknakepawfalnfhiltaeievenleklnklassykevlellesdkksledfesklklrspkylsllnylRlyl 96 
                     ++l  + +Yl+g+ ++  sl++ + +  w +l +  +t  i + + e l++ ++ +++v++l++ +           ++ s+++    ++ +l++
      EHU00091.1   5 VTLLTQPDYLVGVKALHRSLQQTKTR--WPLLVM--ATNAISDSECEALRDEGCIIRRVDPLYPDNDLNQ-------HYASERFG--EVWTKLRA 86 
                     5677888*****************96..555544..69*********************99999877442.......33444444..4567999* PP

  Glyco_transf_8  97 pelfpkldkilylDaD 112
                     ++l  +++++++lDaD
      EHU00091.1  87 WQL-TEYRRMVFLDAD 101
                     ***.************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 870.28
//
Query:       EHU00092.1  [L=142]
Description: hypothetical protein CKS_2351 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-23   82.1   0.0    4.6e-23   81.8   0.0    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.6e-27   4.6e-23       4     130 .]      10     142 .]       8     142 .] 0.95

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.6e-27
   Caudo_TAP   4 klfstdtlkieydkeggelpesvvevs..dineelkiqpkgkflvsdgeglpawvedk...keeqiqqAeqekqqllaqAseqiaplq..davdlgiat 95 
                 + f  ++l+ ey ++ g++p++ +evs   + +++ ++p+gk++  + + +p+w +++   ++e++++A+ ++q+l++qA+  +++ q   +++lg++ 
  EHU00092.1  10 NGFFLQELEAEYHNS-GIWPADGIEVSdeVFVKFSATPPEGKMRGVGSDSMPVWIDIPpptQDELVSAATITRQALISQANTFMNSRQwpGKAALGRLK 107
                 678889999999999.***********97677779*************************************************998888********* PP

   Caudo_TAP  96 deEkaaLlawkkYrvlLnrvDvslapdieWPeqPe 130
                 +++ a++++w +Y+++L +vD+++ap i+WP +P+
  EHU00092.1 108 EDDLALYNKWLDYLDALYAVDLAKAPQITWPIKPD 142
                 *********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1238.34
//
Query:       EHU00093.1  [L=189]
Description: hypothetical protein CKS_2350 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-35  121.0   0.0    4.7e-35  120.9   0.0    1.0  1  DUF2313   Uncharacterised protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.08   13.3   0.0       0.15   12.4   0.0    1.5  1  Nif11     Nif11 domain
      0.081   12.9   0.0       0.26   11.3   0.0    1.9  2  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> DUF2313  Uncharacterised protein conserved in bacteria (DUF2313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   7.8e-39   4.7e-35       2     163 .]       6     186 ..       5     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 7.8e-39
     DUF2313   2 ellallppglaesr..elqallegeapeldrleasaddllkelfpetatelLkdWEkvlglpdnssetleeRRaavlaklnekgglsiayikklaesll 98 
                  l +llpp+ ++    +l+a l++ + +l   ++sa+++++ ++p   + lL+dWE+vl l++ + +t ++R +avl kl+e+ggls+ay+ kla+++ 
  EHU00093.1   6 LLASLLPPVAYDANqvKLDAELTAKGNALSLISSSANEVTEAVTPLFSDGLLNDWERVLELTPGEEDTWQQRLDAVLIKLAETGGLSRAYFIKLAATA- 103
                 5789*********99999********************************************************************************. PP

     DUF2313  99 GeeeveItenqparvganr.........erYifqVqvp..........gasgagenLeawgaavlecllerikPahtevilayt 163
                 G+ +++I+e+ p+r+g nr           Y++ V+v+          gas  ge+L+++g++vle+ +e++kPaht+ +++y+
  EHU00093.1 104 GY-TITIDEFEPFRAGINRagdqlyvpeIIYVWAVNVKssvtvyyfraGASLPGERLATYGNKVLETIFENLKPAHTYCYFTYE 186
                 *9.***********************99677777777777******************************************95 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.5e-05      0.15      28      48 .]      92     112 ..      69     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
       Nif11  28 dheevvalAkeaGyefteeel 48 
                 ++  +++lA+ aGy++t +e+
  EHU00093.1  92 SRAYFIKLAATAGYTITIDEF 112
                 66679**************96 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.52   3.1e+03       3      12 ..      20      29 ..      20      30 .. 0.79
   2 ?   11.3   0.0   4.3e-05      0.26      11      35 ..      79     103 ..      75     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.52
                EEEEEHHHHH CS
       RHH_1  3 sirldeelle 12
                +++ld+el +
  EHU00093.1 20 QVKLDAELTA 29
                5899999977 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHTSSHHHHHHHHHHH CS
       RHH_1  11 lerLdelarrrgrSrSelIReAlre 35 
                 ++ L +la+ +g Sr ++I+ A+ +
  EHU00093.1  79 DAVLIKLAETGGLSRAYFIKLAATA 103
                 667779**************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1542.36
//
Query:       EHU00094.1  [L=353]
Description: gp47 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-57  194.0   6.5    2.4e-57  194.0   6.5    1.4  2  Baseplate_J  Baseplate J-like protein
  ------ inclusion threshold ------
       0.08   13.1   0.0       0.43   10.8   0.0    2.3  2  bPH_2        Bacterial PH domain


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   6.5   2.7e-61   2.4e-57       2     239 ..      66     297 ..      65     312 .. 0.91
   2 ?   -3.9   0.3      0.65   5.8e+03     142     165 ..     328     350 ..     315     351 .. 0.65

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 2.7e-61
  Baseplate_J   2 geyLdrlgelevgvtRkpAtkAsgtvtftgeagtvIpaGtrvstadglsfattedtitagqgsatvkvtaeeaGaagNvpagtsllldtaiagiqsva 99 
                   e+L  +++   g++Rk+At Asg++++tge+g+   aG+++++ +++s+ tt++++t  +g+  v+v+ ++aGaagN++a+ s ++ t++ g +s++
   EHU00094.1  66 TEFLVWHART-RGLYRKAATTASGSAKVTGESGAKAVAGQIITR-GSFSWITTAEVTTGADGTGVVPVRVVTAGAAGNSTAEVSGTFATPPTGFDSTV 161
                  589999**99.5********************************.***************************************************99 PP

  Baseplate_J 100 vantkvssgGadiEsdealreRillalqepptgGnkadYkewalevqgVtrakvlplwngpGtVkvvilldngglPtaellakVqayiseglrPvta. 196
                  ++    +sgG+d+E+d+al++R+l  +++pp gGnk+dY++wal+v+g t+a+v+pl++g GtV+vvi+ ++g +P+a+++a++qayi +++rPvta 
   EHU00094.1 162 TVGL--LSGGTDAETDAALLDRLLDVIRRPPAGGNKYDYRRWALSVDGLTAAYVYPLRRGLGTVDVVITSAGG-MPSADIIAACQAYI-DEQRPVTAk 255
                  8884..5***************************************************************888.**************.********8 PP

  Baseplate_J 197 evtvlaptekavnitatlllaegtdseavkqaveaaiqayfke 239
                  +  vlapt ++v+i a+++++ g + +a+k +  + +++++ +
   EHU00094.1 256 DTIVLAPTFRKVDIAAAITVQ-GITFDAAKVQTITDLTTFINN 297
                  899**************8776.455555555555556655555 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.65
  Baseplate_J 142 alevqgVtrakvlplwngpGtVkv 165
                  a +vq V++a+v++ w  +G+V v
   EHU00094.1 328 AGNVQPVVNATVVE-WIRAGNVTV 350
                  45566677776665.345666655 PP

>> bPH_2  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.5   4.5e+03      30      60 ..     112     140 ..     109     149 .. 0.61
   2 ?   10.8   0.0   4.9e-05      0.43      41      61 ..     215     235 ..     212     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.5
       bPH_2  30 erIqavsleqsllqrrlglgtivietaggsr 60 
                 ++I+++++++     + g++ +++ tag ++
  EHU00094.1 112 SWITTAEVTT--GADGTGVVPVRVVTAGAAG 140
                 5566666644..4455566666667776665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.9e-05
       bPH_2  41 llqrrlglgtivietaggsra 61 
                 +l+r+lg++++vi++agg  +
  EHU00094.1 215 PLRRGLGTVDVVITSAGGMPS 235
                 789***************953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2776.22
//
Query:       EHU00095.1  [L=69]
Description: ISSfl3 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-10   38.9   0.0    8.6e-10   38.8   0.0    1.1  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.031   14.1   0.0    1.4  1  HTH_23     Homeodomain-like domain
      0.025   14.7   0.0      0.044   13.9   0.0    1.5  1  HTH_28     Helix-turn-helix domain
      0.052   13.6   0.0       0.06   13.4   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   8.6e-10      21      63 ..       2      49 ..       1      61 [. 0.79

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.9e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae.....feltal 63
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+        ++ +a+
  EHU00095.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTDapvmlPVTLAA 49
                89**************************99888766545555444444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.9e-06     0.031      17      46 ..       4      32 ..       1      36 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-06
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00095.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.9e-06     0.044      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.9e-06
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00095.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05      0.06      11      43 ..       4      35 ..       1      57 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00095.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 600.19
//
Query:       EHU00096.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00096.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 956.57
//
Query:       EHU00097.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-97  326.6   4.4    3.8e-97  325.2   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      3e-16   59.4   0.1    1.3e-15   57.3   0.1    2.3  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    6.2e-10   39.7   8.7    1.3e-09   38.6   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.015   14.5   0.7      0.028   13.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   14.6   4.4       0.13   12.6   0.7    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.035   14.0   0.3         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.037   12.6   7.0       0.06   11.9   7.0    1.3  1  FUSC             Fusaric acid resistance protein family
      0.039   13.2   0.5      0.064   12.5   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.071   12.9   7.6       0.11   12.2   7.6    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.092   12.3   2.4        0.1   12.2   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.11   12.8   2.3       0.29   11.5   2.3    1.7  1  HalX             HalX domain
       0.17   11.7  10.2       0.28   11.0  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.35   10.5   2.5          1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.46   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
        1.1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    7.7   7.2        5.2    6.6   7.2    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.3    6.8   8.2        3.4    7.8   5.1    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
          9    7.0   8.8         16    6.2   2.2    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.8      0.14   1.2e+02     167     222 ..      34      92 ..      22     121 .. 0.43
   2 !  325.2   0.0  4.4e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeqlkkvl 222
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+ ++vl
    EHU00097.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEEMAEVL 92 
                   45566566667777776666643113332233333333333333333333.222222222 PP

  == domain 2  score: 325.2 bits;  conditional E-value: 4.4e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00097.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00097.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00097.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00097.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00097.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   8.7   1.6e-12   1.3e-09       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.6e-12
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00097.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   3.3e-05     0.028      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00097.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   0.00015      0.13      22      55 ..      23      56 ..      13      73 .. 0.81
   2 ?    2.9   0.4      0.17   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHU00097.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888889************************985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00097.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   2.2e+03      26      54 ..      16      44 ..       9      59 .. 0.78
   2 ?    5.1   0.0     0.024        21      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.6
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00097.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.024
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00097.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00097.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.0     7e-05      0.06     213     295 ..       4      92 ..       1     123 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00097.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999997777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   7.5e-05     0.064      24      77 ..      37      92 ..      33     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.5e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00097.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************8777443335566677788888999********99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.6   0.00013      0.11     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00097.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   0.00012       0.1     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00097.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   3344444555555556666666778899999999998888665543889999999***99999************9999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00097.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.3   0.00033      0.29       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00033
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU00097.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  10.2   0.00032      0.28      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00097.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0012         1     152     191 ..      17      56 ..       4      65 .. 0.86
   2 ?    1.4   0.2      0.26   2.3e+02      97     130 ..      63      96 ..      61     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHU00097.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00097.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5677888888999999999999999999887655 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00097.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00097.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4    0.0011      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00097.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0047         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0047
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00097.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00097.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0019       1.6      12      92 ..      13      95 ..       7     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00097.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677889999999999999999999999***********9997744224455566666666666666666888777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.2    0.0061       5.2      70     153 ..      13      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0061
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00097.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55566666666666666666677777888888888888888885542278888999************************998774 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.1     0.004       3.4      45     141 ..      11     115 ..       6     117 .. 0.62
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfleaq......kellakaeekleelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +      k++ +  e+++++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU00097.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqriqfgKSSEKLREKTARQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 556778888888888888888888777766665555555544330000113333444555666777778888888888776633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU00097.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00097.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.2     0.019        16      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    3.0   0.9      0.18   1.6e+02      34      57 ..      68      91 ..      61      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00097.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.18
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00097.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888899999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1396  (0.0778627); expected 358.6 (0.02)
Passed bias filter:                     1014  (0.0565564); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 3877.72
//
Query:       EHU00098.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00098.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00098.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00098.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00098.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00098.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00098.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00098.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00098.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00098.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00098.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00098.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00098.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00098.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00098.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00098.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00098.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00098.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2299.30
//
Query:       EHU00099.1  [L=62]
Description: hypothetical protein CKS_2343 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.28s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 460.40
//
Query:       EHU00100.1  [L=182]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-06   25.8   0.1    1.4e-05   25.0   0.1    1.6  1  HD_2      HD containing hydrolase-like enzyme
     0.0016   18.4   0.0     0.0022   18.0   0.0    1.3  1  HD_3      HD domain


Domain annotation for each model (and alignments):
>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.5e-09   1.4e-05      51     100 ..      56     105 ..      10     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.5e-09
        HD_2  51 kldaerlallalyHDasEiitGDlptpvKyanpeireaykevEeeaeekl 100
                 +l a +la  al+HDa+E+  GD+ +p+K   p+ r+  k+vE++ ++k 
  EHU00100.1  56 ELVAPELAFEALMHDAAEAYLGDVTAPLKALLPDYRRIEKQVETAIRQKY 105
                 5666788999*********************************9977764 PP

>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.4e-07    0.0022      51      96 ..      63     110 ..      31     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.4e-07
        HD_3  51 ikmfLiHDlvEiltgDiispdelakeekeeeekeaaerilkl..lpee 96 
                    +L+HD +E++ gD+++p ++   + ++ ek+++  i +   lp++
  EHU00100.1  63 AFEALMHDAAEAYLGDVTAPLKALLPDYRRIEKQVETAIRQKykLPQQ 110
                 4456*****************988888888888888888877334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1562.99
//
Query:       EHU00101.1  [L=72]
Description: hypothetical protein CKS_2341 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 586.75
//
Query:       EHU00102.1  [L=139]
Description: hypothetical protein CKS_2340 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   10.8   0.2       0.18   10.5   0.2    1.0  1  MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family


Domain annotation for each model (and alignments):
>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2     1e-05      0.18     143     220 ..       8      85 ..       3      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHHHHHHT----SHHHHHHHCT-TTTS-....TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MAP65_ASE1 143 eikelkkqIkslmeeLglepktsieedllkesednskklkpltretikkLkllkkeleeqksereeklkdlrekikeL 220
                 e+ + +   + lme L  ++k  +e+++   + ++++     + e i++L+l  ++l++++++  + +++ ++++  L
  EHU00102.1   8 ELHQAAVRCLDLMELLNYSHKGLVEDKFAMMEPVFREFHRVASAEKITSLCLYVEQLQAEVAAANQYKESAESELARL 85 
                 66677777789*****************8778888774445689****************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1069.39
//
Query:       EHU00103.1  [L=239]
Description: hypothetical protein CKS_2339 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-13   50.3   5.0    3.6e-13   49.2   5.0    1.6  1  DUF2786      Protein of unknown function (DUF2786)
  ------ inclusion threshold ------
      0.068   14.0   0.5       0.16   12.8   0.0    1.9  2  Histone_HNS  H-NS histone family


Domain annotation for each model (and alignments):
>> DUF2786  Protein of unknown function (DUF2786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   5.0   4.1e-17   3.6e-13       2      39 ..       7      44 ..       6      45 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 4.1e-17
     DUF2786  2 ilekIrKLLalAesstneaEAeaAlakAqeLmarynld 39
                 l kI+KLLalA+++++ +EA+ A+  AqeLm+r+n++
  EHU00103.1  7 FLKKIKKLLALARNNSSAEEAALAMNRAQELMTRHNIT 44
                589*********************************97 PP

>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.16       3      58 ..       8      64 ..       6     116 .. 0.75
   2 ?   -1.9   0.1      0.71   6.4e+03       9      16 ..     138     145 ..     121     157 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX----SSS-----EEEEE..... CS
  Histone_HNS  3 kalieelekqeea.leaeerkealaeirelaaeyGltleelaaeakkakkkkakakk 58
                  ++i++l + +     aee++ a+++ +el+ ++++t ++ a +  +++k+ ++ + 
   EHU00103.1  8 LKKIKKLLALARNnSSAEEAALAMNRAQELMTRHNITSQDAAFSDISEAKTDKSPSH 64
                 4566666666666257788888*******************9995555555544332 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.71
                  XXXXXXXX CS
  Histone_HNS   9 lekqeeal 16 
                  l+k ++ +
   EHU00103.1 138 LRKNIKSA 145
                  22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1965.14
//
Query:       EHU00104.1  [L=63]
Description: hypothetical protein CKS_2338 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 526.55
//
Query:       EHU00105.1  [L=61]
Description: hypothetical protein CKS_2337 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00092   19.4   1.5    0.00098   19.3   1.5    1.0  1  PerC      PerC transcriptional activator


Domain annotation for each model (and alignments):
>> PerC  PerC transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.5   5.5e-08   0.00098       4      49 ..       4      49 ..       1      56 [. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.5e-08
        PerC  4 dkvaekLeakGlyRRaadRWaevmvlletdaeRklvalkRaeClrk 49
                   a + e+ G y  a  RW     + +++ eR +++ +Ra+C r 
  EHU00105.1  4 AIAAVQSEQSGKYADAYLRWEMAEKQAKSEIERVWAVDRRAFCNRA 49
                5567788************************************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 540.14
//
Query:       EHU00106.1  [L=94]
Description: hypothetical protein CKS_2334 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 841.23
//
Query:       EHU00107.1  [L=92]
Description: hypothetical protein CKS_2333 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 792.76
//
Query:       EHU00108.1  [L=297]
Description: phage transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-20   73.4   0.0    6.1e-20   71.9   0.0    1.7  2  AAA_22    AAA domain
      6e-07   29.1   0.0    5.8e-06   25.8   0.0    2.1  1  TniB      Bacterial TniB protein
    8.4e-07   28.9   0.0    1.7e-06   27.9   0.0    1.5  1  AAA_30    AAA domain
    0.00055   19.6   0.0     0.0018   18.0   0.0    1.9  1  HTH_38    Helix-turn-helix domain
    0.00066   19.7   0.1     0.0023   18.0   0.0    1.9  2  HTH_3     Helix-turn-helix
    0.00073   19.8   0.0     0.0039   17.5   0.0    2.2  2  HTH_31    Helix-turn-helix domain
     0.0017   18.7   0.0      0.008   16.6   0.0    2.0  2  AAA_16    AAA ATPase domain
     0.0062   16.9   0.0      0.029   14.8   0.0    2.1  2  HTH_26    Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
      0.013   15.0   0.0       0.23   11.1   0.0    2.6  2  HTH_24    Winged helix-turn-helix DNA-binding
      0.016   15.2   0.0      0.037   14.1   0.0    1.6  1  AAA_14    AAA domain
      0.017   14.8   0.0      0.024   14.3   0.0    1.4  1  AAA_24    AAA domain
      0.019   14.9   0.0      0.054   13.4   0.0    1.7  1  ATPase_2  ATPase domain predominantly from Archaea
      0.028   14.2   0.1       0.14   12.0   0.0    2.2  3  HTH_23    Homeodomain-like domain
       0.03   14.3   0.0       0.09   12.8   0.0    1.9  1  KorB      KorB domain
       0.04   13.7   0.0       0.13   12.0   0.0    1.9  1  HTH_8     Bacterial regulatory protein, Fis family
      0.042   14.2   0.0        1.5    9.2   0.0    2.3  1  AAA_19    AAA domain
      0.072   13.1   0.0       0.42   10.7   0.0    2.2  2  HTH_19    Helix-turn-helix domain
      0.095   12.2   0.0       0.27   10.7   0.0    1.7  2  AAA_7     P-loop containing dynein motor region
       0.12   11.5   0.0       0.34   10.1   0.0    1.7  1  NB-ARC    NB-ARC domain


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.1   5.7e+03      52      70 ..      43      61 ..       8      81 .. 0.57
   2 !   71.9   0.0   6.5e-23   6.1e-20       8     133 ..      94     201 ..      89     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.1
      AAA_22 52 sskdllrellralglelka 70
                + k+l +++ +++++e ++
  EHU00108.1 43 DVKKLDEDIQNFIERESER 61
                4555555555555554444 PP

  == domain 2  score: 71.9 bits;  conditional E-value: 6.5e-23
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrse 106
                  v++G +G GKT+ lr++l q          +++ v++++  + + + +l+el++ lgl++ +   + +el e + +alr+ ++  ll++DEa++l + 
  EHU00108.1  94 NVIYGDAGLGKTMILREYLAQ----------HKDAVLIEADPGYTARVVLEELCSRLGLSKRG---NMHELSESCIEALRDSGR--LLMVDEAENL-PY 176
                 69*******************..........6899***********************98888...******************..**********.** PP

      AAA_22 107 ealeeLrsllnlsrkgvqliLvGtpel 133
                 +ale+Lr++++  + g+ +iL+G+p l
  EHU00108.1 177 RALETLRRIHD--KAGIGIILAGMPRL 201
                 ***********..************76 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.2e-09   5.8e-06      39     166 ..      95     202 ..      82     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.2e-09
        TniB  39 llvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsar 137
                 +++Gd   GKtmi++++ ++h+++          ++++a p  + +   +++  +lg    +r ++++l + +++ lr+ + r+L++DE +nl      
  EHU00108.1  95 VIYGDAGLGKTMILREYLAQHKDA----------VLIEADPGYTARVVLEELCSRLGLS--KRGNMHELSESCIEALRDSG-RLLMVDEAENLP----- 175
                 79****************999865..........79******************99988..799***************87.9**********9..... PP

        TniB 138 kqreflnalksLgnelkipivlvGteeal 166
                    ++l++l++++++  i i+l+G  +++
  EHU00108.1 176 --YRALETLRRIHDKAGIGIILAGMPRLI 202
                 ..7899******************98765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.8e-09   1.7e-06      12     123 ..      86     197 ..      78     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.8e-09
      AAA_30  12 alltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Lae...elgi.eastiakllkrlkgrarlepgtllivDEagmvdtkql 105
                  ++ ++  + v+ G AG GKt++l+++ + ++     v++ A  g  A+v L+e    lg+ +  ++++l ++  + a  ++g+ll+vDEa  +  + l
  EHU00108.1  86 MAHIDS-EINVIYGDAGLGKTMILREYLAQHK---DAVLIEADPGYTARVvLEElcsRLGLsKRGNMHELSESCIE-ALRDSGRLLMVDEAENLPYRAL 179
                 444455.499*************998877666...45899999888888835543334444455666666644444.455667**************** PP

      AAA_30 106 aallkaaekagakvilvG 123
                 ++l ++ +kag+ +il+G
  EHU00108.1 180 ETLRRIHDKAGIGIILAG 197
                 ****************99 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.9e-06    0.0018      18      42 ..      13      37 ..       7      38 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.9e-06
      HTH_38 18 aeGlslreIArrLgrspsTIsRElk 42
                 +G++++ +Ar +g+sp TIs  lk
  EHU00108.1 13 RKGYNQSHVARAIGKSPATISTYLK 37
                589******************8765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.4e-06    0.0023       3      33 ..       9      39 ..       7      47 .. 0.91
   2 ?   -2.8   0.0       7.5   7.1e+03      13      23 ..     134     144 ..     133     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.4e-06
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnGe 33
                el++ +g+ q  +A+++G s++tis + +G+
  EHU00108.1  9 ELMERKGYNQSHVARAIGKSPATISTYLKGI 39
                7899************************996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.5
                 HHHHHHHTSSH CS
       HTH_3  13 eeLAeklGvsr 23 
                 eeL  +lG+s+
  EHU00108.1 134 EELCSRLGLSK 144
                 78888888887 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.1e-06    0.0039       5      38 ..       6      39 ..       2      47 .. 0.91
   2 ?   -2.1   0.1       5.4   5.1e+03      18      27 ..     134     143 ..     128     146 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.1e-06
      HTH_31  5 lLralReraGLsqeevAerlgvsestlsrlEqGr 38
                 L +l er G  q +vA+++g s++t+s +  G 
  EHU00108.1  6 ALTELMERKGYNQSHVARAIGKSPATISTYLKGI 39
                6889**************************9996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.4
      HTH_31  18 eevAerlgvs 27 
                 ee+  rlg+s
  EHU00108.1 134 EELCSRLGLS 143
                 4444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.2   5.9e+03      81     127 ..      43      55 ..       3      67 .. 0.48
   2 !   16.6   0.0   8.5e-06     0.008      22     103 ..      90     154 ..      81     195 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.2
      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagaeasrllellkrll 127
                  +                                  + l e +++++
  EHU00108.1  43 DV----------------------------------KKLDEDIQNFI 55 
                 22..................................33444444444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 8.5e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawreklee 103
                 ++ e+ +++G++G GK+ ++re l + +++    +  ++d               +++ +l++l++++  ++++  +e  e+
  EHU00108.1  90 DS-EINVIYGDAGLGKTMILREYLAQHKDA----VLIEADPG------------YTARVVLEELCSRLGLSKRGNMHELSES 154
                 44.6778*****************877777....44444444............1122444444444444444444444444 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.1e-05     0.029       2      33 ..       7      38 ..       6      47 .. 0.94
   2 ?   -1.7   0.0       4.4   4.2e+03      14      23 ..     134     143 ..     128     152 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.1e-05
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkg 33
                L elm  +g+++s +ar++g s at+s+++kg
  EHU00108.1  7 LTELMERKGYNQSHVARAIGKSPATISTYLKG 38
                899**************************998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.4
      HTH_26  14 seLargtgis 23 
                  eL+ ++g+s
  EHU00108.1 134 EELCSRLGLS 143
                 3555555555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.23       9      39 ..       7      37 ..       4      37 .. 0.93
   2 ?    0.7   0.0       0.4   3.8e+02      21      31 ..     134     144 ..     121     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
      HTH_24  9 LelLqknprisqreLAerlglSpstvnrrlk 39
                L +L++  + +q+ +A+++g Sp+t++++lk
  EHU00108.1  7 LTELMERKGYNQSHVARAIGKSPATISTYLK 37
                889999999********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.4
      HTH_24  21 reLAerlglSp 31 
                  eL+ rlglS+
  EHU00108.1 134 EELCSRLGLSK 144
                 69999***996 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.9e-05     0.037       3      99 ..      92     197 ..      90     207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.9e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikell......vkkesilyinldderd....kkladpekllelileklkeekktylflDEiqevpe.wekalkslvdeg 90 
                 +i vi G    GKT++l++++ ++       +++  +  + l++       +k+ + ++l e + e l++   ++l+ DE+ ++p  + ++l++++d+ 
  EHU00108.1  92 EINVIYGDAGLGKTMILREYLAQHKdavlieADPGYTARVVLEELCSrlglSKRGNMHELSESCIEALRD-SGRLLMVDEAENLPYrALETLRRIHDKA 189
                 688999999***********99888788766555566666666644443332233333566666666555.8999*********954899999999988 PP

      AAA_14  91 knldvivtG 99 
                   + +i++G
  EHU00108.1 190 -GIGIILAG 197
                 .77888777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.6e-05     0.024       6      37 ..      95     129 ..      92     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
      AAA_24   6 liyGpsgiGKTtlakel...gpkplfidtekGlks 37 
                 +iyG++g GKT++++e+    +++++i  + G+ +
  EHU00108.1  95 VIYGDAGLGKTMILREYlaqHKDAVLIEADPGYTA 129
                 79*****************99999*9999999865 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-05     0.054      20      46 ..      91     117 ..      82     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienled 46 
                 +ei +iYG  g GKt +l+e + +++d
  EHU00108.1  91 SEINVIYGDAGLGKTMILREYLAQHKD 117
                 689*****************9999876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.14      14      39 ..      10      37 ..       3      39 .. 0.83
   2 ?   -2.8   0.0       6.7   6.3e+03      21      32 ..     134     145 ..     126     145 .. 0.79
   3 ?   -2.7   0.0       6.1   5.7e+03      17      26 ..     179     188 ..     165     191 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      HTH_23 14 lae..GlsvreIAreLgvsrrTvyrwlk 39
                l e  G++++ +Ar+ g s+ T++ +lk
  EHU00108.1 10 LMErkGYNQSHVARAIGKSPATISTYLK 37
                44456*******************9997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.7
      HTH_23  21 reIAreLgvsrr 32 
                 +e + +Lg s+r
  EHU00108.1 134 EELCSRLGLSKR 145
                 567888888876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.1
      HTH_23  17 GlsvreIAre 26 
                   + r+I ++
  EHU00108.1 179 LETLRRIHDK 188
                 4555555555 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.6e-05      0.09       2      27 ..      14      39 ..      13      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.6e-05
        KorB  2 kgvkqadIAkaLGksksfvslylkll 27
                kg +q+ +A+a Gks++ +s+ylk  
  EHU00108.1 14 KGYNQSHVARAIGKSPATISTYLKGI 39
                899********************954 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.13       9      35 ..       6      32 ..       4      36 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                HHHHHHHHTTT-HHHHHHHHTS-HHHH CS
       HTH_8  9 lIeaALertgGnkskAArlLGisRrtL 35
                ++++ +er g+n+s++Ar  G s+ t+
  EHU00108.1  6 ALTELMERKGYNQSHVARAIGKSPATI 32
                78999****************998886 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0015       1.5       8      37 ..      89     118 ..      83     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0015
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvel 37 
                 + +++ ++ + +G GKT +l++ +a  +++
  EHU00108.1  89 IDSEINVIYGDAGLGKTMILREYLAQHKDA 118
                 677888999***********9988876654 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00045      0.42       5      48 ..       8      47 ..       5      52 .. 0.80
   2 ?   -1.3   0.0       2.3   2.2e+03      15      27 ..     133     146 ..     133     151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00045
      HTH_19  5 keaReelgltqeelaerlgisrskisaiEngkkdvpsaelllki 48
                 e+ e +g++q  +a+ +g s++ is + +g    ++a++++k+
  EHU00108.1  8 TELMERKGYNQSHVARAIGKSPATISTYLKG----IYAGDVKKL 47
                5666899*********************977....555555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
      HTH_19  15 qeelaerlgis.rs 27 
                 +eel++rlg s r+
  EHU00108.1 133 LEELCSRLGLSkRG 146
                 58999****99655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.27       5      59 ..      63     117 ..      59     131 .. 0.74
   2 ?   -1.8   0.0         2   1.9e+03     145     171 ..     230     256 ..     211     259 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
       AAA_7   5 eeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldk 59 
                 ++++++  ++pt  + +   ++++    +   +++G++G GKt+i++++l + ++
  EHU00108.1  63 RSVRIDAQYIPTLTSRKGLDVIRMAHIDSEINVIYGDAGLGKTMILREYLAQHKD 117
                 56677778888888877666666544444445579*************9988774 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
       AAA_7 145 eikdvqlvaamgppgggrneitpRllr 171
                  ++d++ +a+   p   +++++  l r
  EHU00108.1 230 PVEDITAIACSMLPDAEEKDVSDALFR 256
                 589999999988888888999877766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00036      0.34      15      45 ..      86     116 ..      81     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                 TTTSCSEEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC  15 kdelqslvvalvGmgGvGKttlakqilnksd 45 
                 +  ++s +  ++G +G+GKt ++++ l +++
  EHU00108.1  86 MAHIDSEINVIYGDAGLGKTMILREYLAQHK 116
                 6667788999*************99887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2306.31
//
Query:       EHU00109.1  [L=580]
Description: phage transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-16   59.6   0.0    1.5e-15   57.4   0.0    2.1  2  rve            Integrase core domain
    5.4e-14   51.9   0.0      1e-13   51.0   0.0    1.5  1  Mu-transpos_C  Mu transposase, C-terminal
    7.5e-05   22.4   2.2        0.2   11.5   0.0    3.5  4  rve_3          Integrase core domain
    0.00031   20.6   0.0    0.00073   19.3   0.0    1.6  1  DDE_2          Bacteriophage Mu transposase


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   3.4e-19   1.5e-15      22     117 ..     217     321 ..     193     323 .. 0.86
   2 ?   -1.9   0.0      0.82   3.7e+03      73      85 ..     355     376 ..     351     399 .. 0.65

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 3.4e-19
         rve  22 g.......kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytsk....afrefladlgirvsftrpgrpqdnGkvE 109
                         ++ l+ v+d  +r+++++ l  +++  +v++++++a++rfg+  p+ v+sDng   ++k    +++ +  ++g+r+ ++ pgrpq++G++E
  EHU00109.1 217 HpvhgrpfTPELTMVIDGRTRMVVGWSLALSENVIAVADAWRHAMSRFGK--PLFVYSDNGGGEANKtldaEVTGIFPRMGVRHMTSIPGRPQSRGIIE 313
                 145555778999**************************************..*********9999999******************************* PP

         rve 110 rfhrtlkd 117
                 r ++ + +
  EHU00109.1 314 RLNGVIPR 321
                 ***99876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.82
         rve  73 Dngseytsk.........afre 85 
                 Dng+e ts          ++++
  EHU00109.1 355 DNGRELTSAqvkslkrlpSWQQ 376
                 8999999886666666663333 PP

>> Mu-transpos_C  Mu transposase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   2.3e-17     1e-13       2      60 ..     432     490 ..     431     491 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.3e-17
                    HTSEEBEEEE--TTTS--EEEEEE-SHHHHSS-SEEEEEE-GGGTTEEEEEETTS-EEE CS
  Mu-transpos_C   2 llllpretrtvqrdGirlngnrYwspeLaglvgkkVvvryDPrdlsrvyVydldgrfic 60 
                     l++p+  r+ qr++i+l +n Y+s+ L+   g++V v++D++d+ +v +++ dg ++c
     EHU00109.1 432 ELFMPEVIRKAQRGWIELMNNQYFSESLITVDGEEVRVAFDIHDPQEVIIRRMDGTYVC 490
                    69********************************************************9 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.7   7.8e+03      36      50 ..       6      20 ..       3      23 .. 0.73
   2 ?   -3.6   0.0       2.3     1e+04      25      35 ..     137     147 ..     135     156 .. 0.63
   3 !   11.5   0.0   4.4e-05       0.2       2      34 ..     295     327 ..     294     343 .. 0.83
   4 !    8.8   0.1    0.0003       1.3      37      62 ..     372     397 ..     360     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.7
       rve_3 36 frslaearekleawr 50
                 +sl+e +++++++r
  EHU00109.1  6 ISSLTEKQKQIADAR 20
                568888888888876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.3
       rve_3  25 tlrdellneel 35 
                  +rde+  +++
  EHU00109.1 137 AFRDEWCERYS 147
                 56666655544 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 4.4e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellnee 34 
                 g+++  + pg+Pq  g +E++ng + + + +++
  EHU00109.1 295 GVRHMTSIPGRPQSRGIIERLNGVIPRAIAQKY 327
                 78899999***************9887777665 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0003
       rve_3  37 rslaearekleawredYNteRPHssL 62 
                  s +++  ++e+ +e+YNt++ Hs L
  EHU00109.1 372 PSWQQLLDVVEEEVEKYNTRHQHSEL 397
                 577899999***************98 PP

>> DDE_2  Bacteriophage Mu transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   0.00073      13      92 ..     207     287 ..     200     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
                 EEEE-SB-EE-T.TS-EE--EEEEEEETTT--EEEEEEESS--HHHHHHHHHHHHHHH-EESEEE---TTSTTTTTTS--- CS
       DDE_2  13 dgylhnvfvrff.dgevkrpktwlwqdvktrkvlaartdksenidsirlslldvvsryglpkhltidntraaankkltggv 92 
                 dg   n+ v ++ +g    p   +  d +tr v+++    sen+ ++  +    +sr+g p  +  dn  + ank l   v
  EHU00109.1 207 DGKSLNMKVEHPvHGRPFTPELTMVIDGRTRMVVGWSLALSENVIAVADAWRHAMSRFGKPLFVYSDNGGGEANKTLDAEV 287
                 67777777776536777888889999*************************************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4072.63
//
Query:       EHU00110.1  [L=169]
Description: glycosyl transferase, family 8 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-10   41.0   0.1    2.1e-10   40.6   0.1    1.1  1  Glyco_transf_8  Glycosyl transferase family 8
  ------ inclusion threshold ------
       0.82    9.6   2.8        1.1    9.2   0.1    2.4  3  FliN_N          Flagellar motor switch protein FliN N-termina


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   2.3e-14   2.1e-10     120     254 ..       2     143 ..       1     144 [. 0.90

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.3e-14
  Glyco_transf_8 120 seLwdldlkgkvlaaved.................krfkkylnksepliaenfkpeacyFnaGvllfdldewrkenitetlikwlnlnekrtllk 197
                     +eL+ ldl++ vlaa+                   + + ++++++e++  ++    + y n G+l++++de   ++++ ++    +l    + + 
      EHU00110.1   2 DELFTLDLGDFVLAACHAcrcnpnqiesypdswepEFCHYTWQEREQTPPAHV---DYYLNGGFLVLEPDETVFNDLEARIAAIDDL----RAYA 89 
                     68****************************99998888888888888777666...99***********************999333....3679 PP

  Glyco_transf_8 198 lgdqdilnivfkgkvkeldkkynvlglgyeqskkskkeitenaaviHyiGpaKPWld 254
                     + +qd+ln +fk+k+ +l+  yn l +++  +  +  e  ++++ +Hyi  aKPW++
      EHU00110.1  90 FSEQDLLNEAFKDKWLPLSYIYNALKTLR-FQHDTLWEC-KEVKNLHYIL-AKPWER 143
                     *****************************.777777777.89*******9.****87 PP

>> FliN_N  Flagellar motor switch protein FliN N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.09   8.1e+02      37      45 ..      69      77 ..      66      81 .. 0.84
   2 ?    9.2   0.1   0.00012       1.1      14      27 ..      81      94 ..      76     100 .. 0.87
   3 ?   -2.2   0.3      0.43   3.9e+03      13      19 ..     154     162 ..     144     164 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.09
      FliN_N 37 egvFksLeg 45
                e+vF+ Le+
  EHU00110.1 69 ETVFNDLEA 77
                89*****98 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00012
      FliN_N 14 saDDLWAeAlneQa 27
                ++DDL A+A++eQ 
  EHU00110.1 81 AIDDLRAYAFSEQD 94
                79***********5 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.43
      FliN_N  13 e..saDDLW 19 
                    ++D LW
  EHU00110.1 154 RyyAMDKLW 162
                 234899999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1239.40
//
Query:       EHU00111.1  [L=259]
Description: putative dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-10   38.9   0.0    1.2e-09   38.2   0.0    1.3  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.7e-14   1.2e-09       1     110 [.      28     150 ..      28     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.7e-14
                     HHHHHTTTTSSEEEEEE.EEECBEEECHHHHCCGGSH.HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEE........ CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdv.wtldtragaeakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaav........ 85 
                     Ke I+ g++Gevv++ + +  d+ a ++++ +w+ +k   + G+lgdl+ H+ +++++L+G   +v+ +   m  ++++++ +d+ +        
      EHU00111.1  28 KEIIARGEIGEVVHFYGtHNEDYLAKPDTPLDWHCQKaLAGLGALGDLAAHIVNMAHYLVGNIVEVSGDM--MTVIRSRPDPKDLSRqlpvened 120
                     899**************89999999999999999999************************999999877..5778888888888888899999* PP

                     .....EEEEEEEETTEEEEEEEECCTSSSE CS
  GFO_IDH_MocA_C  86 .....msvlnlekgsgevitlesgvskgls 110
                          ++++n+++g++e++ ++ g   gl+
      EHU00111.1 121 qasalLRFQNGAHGVIETSRIACGAKMGLT 150
                     *****************9998877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1905.79
//
Query:       EHU00112.1  [L=106]
Description: oxidoreductase domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-13   49.7   0.1    7.3e-13   49.4   0.1    1.1  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    0.00085   20.0   0.0    0.00097   19.8   0.0    1.1  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
     0.0056   16.9   0.1     0.0086   16.3   0.1    1.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.048   12.3   0.0      0.059   12.0   0.0    1.1  1  DUF2827          Protein of unknown function (DUF2827)
      0.095   12.3   0.4       0.17   11.4   0.4    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1     2e-16   7.3e-13       1      89 [.       4      99 ..       4     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2e-16
                  EEEEEETTSHHHHHHHHHHHHTTTTE......EEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EE CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrle......evvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhv 89
                  +r+++iG+G+ig+ h+ ++ ++              l + ++e a + a++fg++ +  d++el+ dp+id+v ++ pn +h+e+a+aa+++gkh 
    EHU00112.1  4 VRIGMIGSGYIGRCHAIAYAQAPAVFalkgeiVREMLAEVNPELAAKQAATFGFArSTGDWRELVCDPNIDVVDICAPNFLHKEMALAAIANGKHA 99
                  59*************99999997776899965334577888888888899****999999**********************************96 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-07   0.00097      26      89 ..      39     102 ..       6     104 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.7e-07
                    EEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S CS
  NAD_binding_3  26 avadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvta 89 
                    ++a+ +++l+++ +a ++ ++ t d+ +l++++++dvv  ca+    +e++l+a+++gk+ +  
     EHU00112.1  39 MLAEVNPELAAKQAATFGFARSTGDWRELVCDPNIDVVDICAPNFLHKEMALAAIANGKHAIPK 102
                    4445555566669999***************8888887667999999*************9965 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.4e-06    0.0086       1      97 [.       6     100 ..       6     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                      EEEE--SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvda.eitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietg 93 
                      + +iG+G++G++ a  +a+   v+a +  ++   +++++ ++a+++  +f ++  + + +e v ++ +   d+v  ++p++++ +++ a+i++g
       EHU00112.1   6 IGMIGSGYIGRCHAIAYAQAPAVFAlKGEIVREMLAEVNPELAAKQAATFGFARSTGDWRELVCDPNI---DVVDICAPNFLHKEMALAAIANG 96 
                      789***************************************999**********9999999777755...555558***************** PP

                      -EEE CS
  Sacchrp_dh_NADP  94 vhyv 97 
                       h +
       EHU00112.1  97 KHAI 100
                      9976 PP

>> DUF2827  Protein of unknown function (DUF2827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.6e-05     0.059     173     210 ..      48      85 ..      35      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
     DUF2827 173 leeeglefgyrpskrkkRvavfEPNisvvktcviPmli 210
                 ++++ ++fg+  s++++R  v +PNi+vv  c    l 
  EHU00112.1  48 AAKQAATFGFARSTGDWRELVCDPNIDVVDICAPNFLH 85 
                 4567789***********************99866665 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   4.8e-05      0.17       2      22 ..       5      25 ..       4      31 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.8e-05
                    EEEEE--STTHHHHHHHHHHC CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaei 22
                    +i +iG+GY+G  +a+++a++
      EHU00112.1  5 RIGMIGSGYIGRCHAIAYAQA 25
                    89***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 929.15
//
Query:       EHU00113.1  [L=89]
Description: hypothetical protein CKS_2326 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.016   15.5   0.0    1.1  1  DUF5045   Domain of unknown function (DUF5045)
       0.17   12.0   0.1        0.4   10.8   0.1    1.7  2  NapD      NapD protein


Domain annotation for each model (and alignments):
>> DUF5045  Domain of unknown function (DUF5045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.8e-06     0.016      11      71 ..       8      68 ..       6      78 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-06
     DUF5045 11 eKekqikvmEnGpgdlapdfYYyllHkkYeksaavKrklpfRvtAgitqrqkvdkaeaids 71
                +K kqi v E+ + d a ++  +   k++e+ +a+ +k ++   A+i qr+++d  + +  
  EHU00113.1  8 QKGKQIVVLEKSSTDNATELIAQGYEKQFEEVSASSEKKALARFADIRQRNQADYEDFLAG 68
                799**************************************99**********98876655 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.5e-05       0.4      36      57 ..       9      30 ..       4      43 .. 0.90
   2 ?   -1.7   0.0      0.36   3.2e+03      45      59 ..      41      55 ..      36      59 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
        NapD 36 egklVvviEaesedeladtiea 57
                +gk +vv+E++s+d++++ i++
  EHU00113.1  9 KGKQIVVLEKSSTDNATELIAQ 30
                59***************99976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.36
        NapD 45 aesedeladtieaie 59
                a+se+++++++++i+
  EHU00113.1 41 ASSEKKALARFADIR 55
                455666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 762.52
//
Query:       EHU00114.1  [L=270]
Description: hypothetical protein CKS_2324 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2183.92
//
Query:       EHU00115.1  [L=55]
Description: hypothetical protein CKS_2323 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 498.40
//
Query:       EHU00116.1  [L=61]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-13   50.2   0.1    3.6e-13   50.0   0.1    1.0  1  T6SS_HCP  Type VI secretion system effector, Hcp


Domain annotation for each model (and alignments):
>> T6SS_HCP  Type VI secretion system effector, Hcp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1     2e-17   3.6e-13       1      53 [.       6      56 ..       6      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2e-17
                EEEECCES-----SSSTTSEEEEEEEEEEEE-SS--TTSBCCC....EEEEEE CS
    T6SS_HCP  1 ylkiegikGestdkghedeievlsfshgvsqprsasagsgsgaragkvehsel 53
                ylk+eg +Ges+d++h+++++vlsf++g+sqp +++   g+g++agkv++++l
  EHU00116.1  6 YLKVEGTTGESQDSKHKGWTDVLSFEWGASQPCNMA--VGGGGGAGKVSFNDL 56
                9******************************66666..55666668****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 554.46
//
Query:       EHU00117.1  [L=340]
Description: putative alkanal monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-23   83.2   0.6    3.1e-23   82.7   0.6    1.3  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.6   1.7e-27   3.1e-23       2     232 ..       8     255 ..       7     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1.7e-27
  Bac_luciferase   2 efgvflptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhl 96 
                     +fg+++p  q+++++a+   l + ++la+aaEelG d++ +  hh+  ++ +++f llaa+ a+T++i++gt+v  +   +P+++ ++a   d +
      EHU00117.1   8 SFGHWTPSPQSATRSAQD-VLMQSIDLAVAAEELGADGAYFRVHHFA-RQLSSPFPLLAAVGARTKKIEIGTGVIDMRYENPLYMVEDASAADLI 100
                     69********99999999.**************************96.4449*************************99**************** PP

  Bac_luciferase  97 sgGRfglglgtggpave...errfGv...dhderyarlrEfvevlrrlwrg...eevdfeGeffsvkgalllprpgqgp..iPvyvaaaspagle 180
                     s+GR+ lgl +g+p+++    r fG    + ++  ++ r  +ev+  ++rg    +++ +  f +   +ll+ +p +++    ++ +++s+a++ 
      EHU00117.1 101 SNGRLQLGLSRGSPEQVidgWRYFGYvpqEGETDADMGRRHTEVFLDALRGegfAKPNPQPMFPN-PPGLLRLEPLSEGlrERIWWGSGSNATAV 194
                     ************99999333233466888666666666777777777776633355566666633.44444444544445455************ PP

  Bac_luciferase 181 laarhadglllag.......eppe.eaaelierlragaaeagrdpadirvgi..sltvivad 232
                     +aa+ +  l +         ep+  + a++i+ +r ++++ag++++ +rv +  s++  v+d
      EHU00117.1 195 WAAKMGMNLQSSTlkddetgEPFHiQQAKQIRAYRDAWKAAGHQRE-PRVSVsrSIFALVND 255
                     ***********9987765554444345789*************875.666661155555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2768.24
//
Query:       EHU00118.1  [L=304]
Description: 2-dehydropantoate 2-reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  115.4   1.2    2.1e-33  115.1   0.4    1.5  2  ApbA      Ketopantoate reductase PanE/ApbA
    1.1e-19   70.9   0.0    1.6e-19   70.3   0.0    1.3  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.4   2.3e-37   2.1e-33       2     150 ..       4     150 ..       3     152 .. 0.95
   2 ?   -3.0   0.0      0.56     5e+03       8      41 ..     178     212 ..     177     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 2.3e-37
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEEE CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvvll 100
                 +  GaGa G++++a+L +ag+dvt+++r+ r+ +l+++Gl l++++g+e+l p+  +++     ++++dl+i+tvK++ +++a+++i+++++ +t +++
  EHU00118.1   4 LLEGAGATGGYFGARLMQAGQDVTFLVREGRFRQLQQTGLVLQTPSGQETLHPTLITADR---LDTHYDLIIITVKSTGLDQAIQDIARAVGLHTLIMP 99 
                 566*********************************************************...99********************************** PP

                 ESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS.--EEEEEES CS
        ApbA 101 lqNGlgheeelrealpkprvlggvtthgatregpgevhhag.kgeikigel 150
                 ++NG++h  +l ++++++rvlgg++ ++at  ++g+v + +  ++i +g+l
  EHU00118.1 100 ILNGMRHINTLVTHFGADRVLGGLCKINATLNDQGHVVQLTpLHQICYGAL 150
                 *************************************99987777777766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHH.HTHCEEEE-SCHHHHHHHHHCE CS
        ApbA   8 aiGsllaakLak.agadvtlilrsrrlealkknGl 41 
                  iG l+   L   +   v +++r++  + l++ G 
  EHU00118.1 178 IIGELWEKWLLLsTLGAVCCLARGNTQQVLNQPGG 212
                 57777776666646666888888885554777775 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   1.8e-23   1.6e-19       1     117 [.     177     293 ..     177     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.8e-23
      ApbA_C   1 dirlarweKllinaainpltalldckngellespelralvrallkEalavaeaegvelseerleeaveavlektaa.nrsSMlqDveagrktEidyinG 98 
                 +i ++ weK+l+ +++ ++++l++ +++++l++p ++ l++ +  E+l+++ aeg++l++  + +++ a+l+  +  ++sSM++D+ +g  +E d i+G
  EHU00118.1 177 NIIGELWEKWLLLSTLGAVCCLARGNTQQVLNQPGGEMLLQGIYSEVLQIICAEGYQLRPA-VTAKIYALLNDPSTpMTSSMYRDLTQGFAIEADPIIG 274
                 78899********************************************************.8888888888866526********************* PP

      ApbA_C  99 avvklAeklgvetPvnell 117
                  ++ +A ++g+ +P ++++
  EHU00118.1 275 DLLLRASRHGITAPLLNAV 293
                 ***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2265.68
//
Query:       EHU00119.1  [L=352]
Description: lac operon transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-37  129.6   4.9    2.4e-37  128.8   1.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    3.2e-23   81.2   0.3      6e-22   77.2   0.3    2.7  2  LacI          Bacterial regulatory proteins, lacI family
    1.1e-21   77.5   2.3    1.7e-21   76.9   2.3    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.4e-17   64.2   0.3    2.3e-17   63.4   0.3    1.4  1  Peripla_BP_4  Periplasmic binding protein domain
    0.00053   20.3   1.4     0.0019   18.5   0.2    2.6  2  HTH_31        Helix-turn-helix domain
    0.00063   19.5   0.2     0.0024   17.6   0.0    2.1  2  HTH_10        HTH DNA binding domain
     0.0039   17.1   0.1      0.022   14.7   0.1    2.3  1  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0054   16.8   0.1      0.014   15.4   0.1    1.7  1  HTH_3         Helix-turn-helix
     0.0072   16.0   1.2        1.3    8.8   0.1    3.2  3  HTH_DeoR      DeoR-like helix-turn-helix domain
     0.0077   15.6   0.2      0.028   13.8   0.2    2.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0077   16.3   0.0      0.021   14.9   0.0    1.8  1  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.045   13.6   0.0    2.1  1  HTH_23        Homeodomain-like domain
      0.025   14.6   0.0      0.075   13.1   0.0    1.8  1  HTH_29        Winged helix-turn helix
      0.074   13.2   0.3       0.23   11.6   0.1    2.0  2  DUF3175       Protein of unknown function (DUF3175)
       0.14   11.9   0.3       0.66    9.8   0.0    2.2  2  HTH_38        Helix-turn-helix domain
       0.78   10.2   3.8        3.5    8.1   0.5    3.0  3  ParD          Antitoxin ParD


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.15   1.7e+02       2      55 ..      56     107 ..      22     157 .. 0.70
   2 !  128.8   1.0   2.2e-40   2.4e-37       1     166 []     170     326 ..     170     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.15
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-S CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpa 55 
                   ++L+ +  r++++++  +   + a  ++  + +q ++++g+ l + +  add++
    EHU00119.1  56 QQLAGKATRTLGLAT--SNLALMAPAQIASAIQQRAARAGYHLVIAMDSADDAE 107
                   566666666666666..5555666667777777777777777766666555543 PP

  == domain 2  score: 128.8 bits;  conditional E-value: 2.2e-40
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC.-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa.lPtAviaasDelAlgvlqalrea 96 
                   v+hLv+lGh++i++++  g+ ++ ++++re+ +rqal+ +gl +  +     d++a+++++a+l   +l   + lP+A+++a+De+Alg+++al+++
    EHU00119.1 170 VKHLVALGHTHIGLLN--GPVRSVSARQREAVWRQALAGHGLSPCCV--LRGDWSAQSGYQAML--SQL--PDaLPQALLVANDEMALGAMRALHQH 258
                   78**************..************************95544..335566777777776..343..22499********************* PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   g+++P ++s++g+dd++++a  +PplTt+rq+l++lG + +e+ l+ l + +a+++++l p  lv+Re+t
    EHU00119.1 259 GVAIPAEISIVGYDDTAESAWYQPPLTTIRQDLQQLGATSVEQALAAL-QGEAVASRTLEPV-LVVRETT 326
                   ***************9999*****************************.6777888888777.*****98 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.3   5.4e-25     6e-22       1      46 []       7      52 ..       7      52 .. 0.99
   2 ?    0.5   0.0      0.47   5.3e+02      20      34 ..     184     199 ..     183     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 5.4e-25
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t++DVA+lAGVS++TVSrvLn +e+Vs  tre+Veaam++lnY+Pn
  EHU00119.1  7 TLDDVAQLAGVSYQTVSRVLNRSEQVSPRTREKVEAAMQQLNYVPN 52
                89*******************************************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.47
                 CTTS.SSSTHHHHHHH CS
        LacI  20 Lnnk.erVseetrerV 34 
                 Ln++ ++Vs+  re V
  EHU00119.1 184 LNGPvRSVSARQREAV 199
                 899999********99 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   2.3   1.5e-24   1.7e-21      18     259 ..      80     306 ..      78     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.5e-24
                   HHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE..-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-.HHHHHHHHHH CS
  Peripla_BP_1  18 dlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliia..tsdtsfdditakaesgipvialedaidapdgvPcvipd.dtqageestq 111
                   ++ ++i++ a++ g+ + ++a ++ +d+++ ++ l a+++d+++i     + + ++i++   +  pv++l+     p++v +     + + +  + +
    EHU00119.1  80 QIASAIQQRAARAGYHL-VIAMDSADDAEATVNELMAQRVDAVLINmpLEAADAEKIRRLCGK-KPVLFLDAE---PHAVVSHCQYsNEKGARAAVK 171
                   6889***********86.89*************************954345557899999999.9*****999...66666666662555555899* PP

                   HHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-.TT-SEEE-SSHHHHHHHHHHHHHTT.--G CS
  Peripla_BP_1 112 kLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh.PeidaivaindeaalGavlalkkeGrlki 207
                   +L+a gh   i ll+gp  +  a++r   +++ala++Gl      v+ g+ + + +++a+ + l    P+  a+   nde+alGa++al ++G + i
    EHU00119.1 172 HLVALGHTH-IGLLNGPVRSVSARQREAVWRQALAGHGL--SPCCVLRGDWSAQSGYQAMLSQLPDAlPQ--ALLVANDEMALGAMRALHQHG-VAI 262
                   *********.*******999999999999**********..999*************9988888888888..*********************.*** PP

                   GGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 208 keevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   + e+     s v+yd      ++  +++pl++i   +++lG ++ ++ l   
    EHU00119.1 263 PAEI-----SIVGYDDT---AESAWYQPPLTTIRQDLQQLGATSVEQALAAL 306
                   ****.....******99...88999****************99988776654 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.3   2.1e-20   2.3e-17      19     257 ..      84     309 ..      73     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 2.1e-20
                   HHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHH CS
  Peripla_BP_4  19 gleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeyl 115
                   ++++ a+ +g+  ++   a  +a +  a ++ + a+ vd++++++   +a a+ + +++ +  pV + d++    + ++++ +  ne+ ++++ + l
    EHU00119.1  84 AIQQRAARAGYHLVI---AMDSADDAEATVNELMAQRVDAVLINMPLEAADAEKIRRLCGK-KPVLFLDAE---PHAVVSHCQYSNEKGARAAVKHL 173
                   566677777775555...5666677788999*************99999999999999988.69*******...9********************** PP

                   HHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSCCHHHCHHHHHHHTTT..TS CS
  Peripla_BP_4 116 aeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltan.pldgilaandgmaegalealeaagl..ag 209
                   +    ++   + +l+G   +  a++r++  r++l++  g+  +  v  ++w+a+ ++qa+ + l    p ++ l and+ma+ga++al + g+    
    EHU00119.1 174 VALGHTH---IGLLNGPVRSVSARQREAVWRQALAG-HGLSPCC-VLRGDWSAQSGYQAMLSQLPDAlP-QALLVANDEMALGAMRALHQHGVaiPA 264
                   ***9976...9999**********************.6777776.5667****************7756.9*********************95433 PP

                   TEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 210 kvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   ++ ++g+D t e+  a+ +  ++ t+ qd ++lg+++ve a+a+l+G+
    EHU00119.1 265 EISIVGYDDTAES--AWYQPPLT-TIRQDLQQLGATSVEQALAALQGE 309
                   3337777766666..56666666.**********************98 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   1.7e-06    0.0019      13      52 ..       4      45 ..       1      57 [. 0.76
   2 ?   -1.8   0.1       3.6     4e+03      42      58 ..     195     211 ..     189     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.7e-06
      HTH_31 13 aGLsqeevAerlgvsestlsrlEqGrrgrpspa...vlealar 52
                + +++++vA+++gvs  t+sr+ +  ++ +sp+    +ea+ +
  EHU00119.1  4 RSVTLDDVAQLAGVSYQTVSRVLNRSEQ-VSPRtreKVEAAMQ 45
                6799********************9996.86662226666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.6
      HTH_31  42 pspavlealaralgldp 58 
                  ++av+++++ ++gl+p
  EHU00119.1 195 QREAVWRQALAGHGLSP 211
                 46778888888888776 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.1e-06    0.0024      21      49 ..       3      31 ..       2      32 .. 0.95
   2 ?   -2.6   0.1       4.4   4.9e+03      22      33 ..     332     343 ..     331     350 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
      HTH_10 21 PRrvtlkeLAkelGIskstlsehLrkaes 49
                +R vtl+++A+  G+s +t+s  L+++e+
  EHU00119.1  3 SRSVTLDDVAQLAGVSYQTVSRVLNRSEQ 31
                79************************996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.4
      HTH_10  22 RrvtlkeLAkel 33 
                 ++++l++LA +l
  EHU00119.1 332 KDADLSALARQL 343
                 567777777765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     2e-05     0.022      22      44 ..       6      28 ..       3      32 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
                HHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilse 44
                +t ++ A++ G++ +tvsr+l++
  EHU00119.1  6 VTLDDVAQLAGVSYQTVSRVLNR 28
                7889*****************97 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.3e-05     0.014      10      40 ..       6      36 ..       2      45 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGernPslet 40
                 ++ ++A+++Gvs++t+sr  n   + s++t
  EHU00119.1  6 VTLDDVAQLAGVSYQTVSRVLNRSEQVSPRT 36
                5889*****************9966677766 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0012       1.3      12      36 ..       3      27 ..       1      38 [. 0.86
   2 ?   -2.8   0.0       4.8   5.4e+03      41      54 ..      59      72 ..      57      72 .. 0.82
   3 ?    4.4   0.0     0.028        32      29      39 ..     285     295 ..     284     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
    HTH_DeoR 12 qgklsveelvellgvSeaTiRRDLn 36
                +++++++++++l gvS +T+ R Ln
  EHU00119.1  3 SRSVTLDDVAQLAGVSYQTVSRVLN 27
                689*****************88776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.8
    HTH_DeoR 41 qglltRthGGavsi 54
                +g+ tRt G a+s+
  EHU00119.1 59 AGKATRTLGLATSN 72
                68999***988875 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.028
    HTH_DeoR  29 aTiRRDLneLe 39 
                 +TiR DL++L 
  EHU00119.1 285 TTIRQDLQQLG 295
                 6*******996 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   2.5e-05     0.028      28      50 ..       6      28 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrildr 50
                   +  +vA++ gvS  TV r+l+r
    EHU00119.1  6 VTLDDVAQLAGVSYQTVSRVLNR 28
                  6899*****************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-05     0.021       6      37 ..       3      34 ..       1      35 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
                SCT--HHHHHHHTTSSHHHHHHHHHHHSSS-H CS
    HTH_AraC  6 stnltiediAdelgfSrsyFsrlFkketGmtP 37
                s++ t++d+A+ +g+S ++ sr++ +  +++P
  EHU00119.1  3 SRSVTLDDVAQLAGVSYQTVSRVLNRSEQVSP 34
                789********************999888888 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     4e-05     0.045      19      44 ..       7      30 ..       3      36 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkryree 44
                +  ++A++ gvs++Tv+r+l+r   e
  EHU00119.1  7 TLDDVAQLAGVSYQTVSRVLNRS--E 30
                56799****************93..4 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.7e-05     0.075      14      39 ..       7      32 ..       3      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.7e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeeg 39
                t  ++A+l g+s++tv r+l+r e+ 
  EHU00119.1  7 TLDDVAQLAGVSYQTVSRVLNRSEQV 32
                67889*****************9885 PP

>> DUF3175  Protein of unknown function (DUF3175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00021      0.23      26      80 ..      20      73 ..       2      77 .. 0.84
   2 ?   -0.8   0.0       1.5   1.7e+03      12      38 ..      65      91 ..      61      93 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
     DUF3175 26 kkiakslkrsaekskrRkaepfrsamsmLtfyinRagknLskerrkiLekakdeL 80
                +++++ l+rs + s r + e   +am  L++  nR +++L  +  ++L  a ++L
  EHU00119.1 20 QTVSRVLNRSEQVSPRTR-EKVEAAMQQLNYVPNRVAQQLAGKATRTLGLATSNL 73
                678888999988887666.6679*******************9999998887766 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.5
     DUF3175 12 aldlekgvfksddpkkiakslkrsaek 38
                +l l ++  +   p++ia+++++ a +
  EHU00119.1 65 TLGLATSNLALMAPAQIASAIQQRAAR 91
                5777777788889******99988765 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00059      0.66      21      43 ..       6      28 ..       1      29 [. 0.88
   2 ?   -1.1   0.1       1.5   1.7e+03      24      32 ..     344     352 .]     340     352 .] 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00059
      HTH_38 21 lslreIArrLgrspsTIsRElkR 43
                 +l ++A++ g+s +T+sR l R
  EHU00119.1  6 VTLDDVAQLAGVSYQTVSRVLNR 28
                57889***************988 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
      HTH_38  24 reIArrLgr 32 
                  +IAr+L r
  EHU00119.1 344 QQIARKLSR 352
                 69***9987 PP

>> ParD  Antitoxin ParD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.53     6e+02      42      67 ..      32      62 ..       8      67 .. 0.62
   2 ?   -1.0   0.0       2.1   2.4e+03      43      61 ..     102     120 ..      94     123 .. 0.79
   3 ?    8.1   0.5    0.0031       3.5      17      55 ..     301     343 ..     290     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.53
        ParD 42 a......dedealkeLealLkerieeakagkv 67
                       + ++a+++L+  + +r+++  agk+
  EHU00119.1 32 VsprtreKVEAAMQQLN-YVPNRVAQQLAGKA 62
                22222435567777775.56889998888876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.1
        ParD  43 dedealkeLealLkeriee 61 
                 ++d+a + +++l+++r+++
  EHU00119.1 102 SADDAEATVNELMAQRVDA 120
                 6677888999999999985 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0031
        ParD  17 kAvAAlqGksikeYvLerlleepkea....dedealkeLealL 55 
                 +A+AAlqG ++   +Le +l   +++    ++d+ l++L+  L
  EHU00119.1 301 QALAALQGEAVASRTLEPVLVVRETTaapaSKDADLSALARQL 343
                 79*****************965544455656666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2641.11
//
Query:       EHU00120.1  [L=108]
Description: uncharacterized DUF496 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-45  151.9   9.0    4.3e-45  151.7   9.0    1.0  1  DUF496    Protein of unknown function (DUF496)
  ------ inclusion threshold ------
      0.042   13.2   0.1      0.044   13.2   0.1    1.1  1  ELP6      Elongation complex protein 6


Domain annotation for each model (and alignments):
>> DUF496  Protein of unknown function (DUF496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   9.0   4.8e-49   4.3e-45       1      92 [.       8      99 ..       8     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 4.8e-49
      DUF496  1 lkdvlelvrlarrknklkreiednekkirdnqkrvlllenlleyikedmsieeikaiienmkddyedrvddyiiknaelskerreiskklke 92
                ++dvle+vr++rrknkl+rei dnekkirdnqkrvlll+nl+eyik+ ms+e i++ii+ m++dyedrvd+yi+kna+lskerre+skklk+
  EHU00120.1  8 FQDVLEFVRTFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSVEAIQEIIASMRADYEDRVDEYIVKNADLSKERRELSKKLKT 99
                79****************************************************************************************97 PP

>> ELP6  Elongation complex protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.9e-06     0.044     120     190 ..      24      90 ..       1     102 [. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.9e-06
        ELP6 120 lyefvksalkesedgeeewkppvllvDdlsvLlslgvsaaavldFihyCratvcsklkgnvvvlvradeee 190
                 l    + ++ ++e++ ++++ +vll+D+ls  ++ g+s++a+ + i + ra    ++   +v     ++e 
  EHU00120.1  24 L----QREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSVEAIQEIIASMRADYEDRVDEYIVKNADLSKER 90 
                 2....23333333333678899*************************999987777777777665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 842.59
//
Query:       EHU00121.1  [L=351]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-14   52.6  14.8    7.6e-14   51.9  14.8    1.3  1  FUSC_2    Fusaric acid resistance protein-like
    1.7e-13   50.0   6.6    2.1e-13   49.8   6.6    1.0  1  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9  14.8   8.5e-18   7.6e-14       2     127 .]      33     158 ..      31     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 8.5e-18
      FUSC_2   2 avliaellglwrgeWalitaaivlsp..tlgasltravqRilGtvlGavlallllyllpgn..lalallvfllvfliaffl.krnyalafifltllall 95 
                 a+l++++ g + g W lit ++v+ p  t g+++ ra+qRi Gt++G++ ++++l l   +    la++ +++++ ++++l k +y++  i +tl +++
  EHU00121.1  33 AFLLVRVTGIPEGTWPLITLVVVMGPisTWGNVFPRAIQRIGGTIAGSISGFIALRLEMISlpGMLAWCAVIMFISGYLTLgKHPYMALLIGITLCVVV 131
                 67999**********************9***************************6655543245555555555555555525668************* PP

      FUSC_2  96 lyslaagsgnpieialhRlldvliGiliallv 127
                  + +     +++++a+ R  dv++G+l+all+
  EHU00121.1 132 GAPM-----GDFTVAMWRGGDVILGSLLALLF 158
                 **99.....6899****************996 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   6.6   2.3e-17   2.1e-13       3     316 ..      21     343 ..      19     350 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 2.3e-17
        FUSC   3 lFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPls..GavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrn.f 98 
                 ++ l+ ++A l+A ++  + ++p+  w ++T ++V+ P s  G v+ +++ R+ GT++G + + + +       ++ l ++ +W+++ +++s ++    
  EHU00121.1  21 VHGLRIAVAFLCAFLLVRVTGIPEGTWPLITLVVVMGPIStwGNVFPRAIQRIGGTIAGSISGFIAL----RLEMISLPGMLAWCAVIMFISGYLTLgK 115
                 5789**********************************9999********************98766....456788999999999999999965555* PP

        FUSC  99 rsYafvLAGYTaalialpavadPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaala.geegaeareaararlaad 196
                   Y ++L G+T++ +    v  P + F +A++R  +++lG + a+l  a+ + +++  + r +l+ +l++ ++   a  + +  ++ + ++ + +l+  
  EHU00121.1 116 HPYMALLIGITLCVV----VGAPMGDFTVAMWRGGDVILGSLLALLFTAI-WAQRAYIHWRIQLSDTLAEMAKIYHAGFSaNLVEKPRLNKPLGKLLTS 209
                 ************998....6889999*****************9998776.66677777777777777777775444444044455556779******* PP

        FUSC 197 ilalealrsqaayesprirararalrrllsrm.....lallallsslarllarlraeeaaavpe.laallaelaal.......eaaaaaealeaalaal 282
                 ++ + al++  + e+       +a++ l++ m     + + a++ s +++l  l+a   ++++e  ++ l++l  +       +  aa ++l++ +++l
  EHU00121.1 210 VVKMRALLEPSSKETLIPKSVFEAIQTLNRNMvytieMQINAWWASRESHLIMLNAPTLRRTQEmTENALRTLSVMavkgetyDIIAANHELTEIVKEL 308
                 ********************************5555557779999999********9999999999999999999888888885555677777777777 PP

        FUSC 283 rarlralrraleadadta.alllarlaellaelaq 316
                  + +++ + +le++   +  +l  +la +l+++++
  EHU00121.1 309 KQLIADGSDRLEEAPIYGyVWLSLELAKQLERMTD 343
                 77777777766622222202333445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2888.79
//
Query:       EHU00122.1  [L=385]
Description: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-90  301.6   0.0    4.7e-90  301.2   0.0    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    5.8e-21   74.5   0.1      1e-20   73.7   0.1    1.4  1  PBP5_C           Penicillin-binding protein 5, C-terminal dom
    2.6e-13   50.0   0.0    3.8e-13   49.5   0.0    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
     0.0057   15.9   0.7      0.067   12.4   0.1    2.2  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.2   0.0     1e-93   4.7e-90       6     240 ..      27     259 ..      22     260 .. 0.98

  Alignments for each domain:
  == domain 1  score: 301.2 bits;  conditional E-value: 1e-93
                    ---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS..GTTSSTTS-TTT-EEEHHHHHHH CS
  Peptidase_S11   6 sepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn..nkevsniflkkgskvsvkdLleg 99 
                    ++p +i+a s++l+da+tG+vL++ n+de++++ASltKlmT y+v +a++++k++ dd+vt+++da+a gn  +k++s +flk+g+k+sv+dL +g
     EHU00122.1  27 TPP-AIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITRDDMVTVGKDAWAAGNpvFKGSSLMFLKPGDKLSVRDLSRG 121
                    566.9*******************************************************************9*********************** PP

                    HHCC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHHHHHHHHGGGESEEEETTECTEEEESS CS
  Peptidase_S11 100 llvssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkdlpeelkitkeksltfngikklnyknk 195
                    ++++sgNdA+valA+++aGs+++Fvk+Mn+++++lGl+nt+f++++GLd+++q+ssA d+a l++a++  +p+ +++++ek+lt+n    ++++n+
     EHU00122.1 122 VIIDSGNDACVALADYVAGSQDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQYSSALDMAKLSRAIIDGEPDFYAMYREKNLTWN---GITQNNR 214
                    *************************************************************************************9...9****** PP

                    TGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 196 nkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    n+ll++++l vdglkt +t+ Ag +++a+   +q rli+V+++ k
     EHU00122.1 215 NGLLWDNNLHVDGLKTDHTETAGFNIIASNIVGQHRLIAVIMGGK 259
                    ******************************************976 PP

>> PBP5_C  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.1   2.3e-24     1e-20       1      90 [.     279     369 ..     279     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 2.3e-24
                 EEEEEEEXTTCESEEEEEESSSSSEEEEEESSXEEEEEETTHCCTEEEEEEE.SSSEESGBGTTSEEEEEEEEETTEEEEEEEEEESSXBX CS
      PBP5_C   1 FetkklykkgkvvktvsvlkgkekeVplvakediyvtvkkgekkklkakvel.kksleapikkGqkvGklkvyldgkliakvplvakedve 90 
                 F+t++l+++gk++++  v++g+  +V+++++ d+y+ ++++e  ++kak+++ + +leap+k+++++G ++v+ ++k+ia +plva+ +v 
  EHU00122.1 279 FDTVQLFHAGKKIGSEHVWYGNPHQVDVGTAYDVYLSLPRSEIPNVKAKYVInRTDLEAPLKANENIGEIQVMDKDKQIASYPLVALTAVN 369
                 99*************************************************************************************9997 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   8.5e-17   3.8e-13       2     146 ..      42     194 ..      41     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 8.5e-17
                      TTTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH......HTSSSTSGGGST.TSEEEHHHHHHHHHHTT-HHHHHHH CS
  Beta-lactamase2   2 dtgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaed......ivggsgilqklp.gktlslrdlltlmiavSDNtAtnlL 87 
                      +tg++l + n+de+ + aS+ K++  + + +a++++k+  d+ +t+ +++      + +gs  + +l+ g++ls+rdl + +i++S N A  +L
       EHU00122.1  42 TTGQVLtAGNPDERRNPASLTKLMTGYVVDRAIDQKKITRDDMVTVGKDAwaagnpVFKGSSLM-FLKpGDKLSVRDLSRGVIIDSGNDACVAL 134
                      689999556*****************************************77766444566544.555266*********************** PP

                      HHHH.T.HHH....HHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSS CS
  Beta-lactamase2  88 idrl.g.lea....vnawlkelglretrlrrklpdleaadkdkrntttardlarllealargell 146
                       d++ g +++    +n + ++lgl++t++++ +++l+a    +  +++a d+a+l +a++ ge+ 
       EHU00122.1 135 ADYVaGsQDNfvklMNHYVEKLGLTNTHFET-VHGLDA----PGQYSSALDMAKLSRAIIDGEPD 194
                      ****845666333379999*********995.677766....99******************965 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.5e-05     0.067      18      99 ..      37     118 ..      29     120 .. 0.73
   2 ?    1.8   0.1     0.025   1.1e+02     174     234 ..     155     187 ..     126     310 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
                     EEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG...GGTST...........TCTTGGGTTEBHHH CS
  Beta-lactamase  18 avavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV...skylP...........efagpgkgkiTlrd 98 
                     +++++ +g+v+ +              ++d++   aS+tK++t+ +v + ++++k++ dd V   ++ +             f +pg++ +++rd
      EHU00122.1  37 VLMDATTGQVL-T------------AGNPDERRNPASLTKLMTGYVVDRAIDQKKITRDDMVtvgKDAWAagnpvfkgsslMFLKPGDK-LSVRD 117
                     56666667776.1............33789999****************************9888333333555555555556677777.77777 PP

                     H CS
  Beta-lactamase  99 L 99 
                     L
      EHU00122.1 118 L 118
                     6 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.025
                     TTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHH CS
  Beta-lactamase 174 rpLgmkdtelgppesgdprdaagytgngpearappanlpaeaegagglistardlarflgl 234
                     +  g+++t++ +    d++ +                           +s+a d+a++ + 
      EHU00122.1 155 KL-GLTNTHFETVHGLDAPGQ---------------------------YSSALDMAKLSRA 187
                     44.555555555544444444...........................5555555554422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2920.05
//
Query:       EHU00123.1  [L=475]
Description: exonuclease I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-104  349.4   0.0   1.4e-104  349.0   0.0    1.1  1  Exonuc_X-T_C  Exonuclease C-terminal
    2.2e-26   93.4   0.0      4e-26   92.5   0.0    1.4  1  RNase_T       Exonuclease


Domain annotation for each model (and alignments):
>> Exonuc_X-T_C  Exonuclease C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.0   0.0  1.6e-108  1.4e-104       1     268 [.     211     471 ..     211     472 .. 0.99

  Alignments for each domain:
  == domain 1  score: 349.0 bits;  conditional E-value: 1.6e-108
                   TSHHHHHTT--TTTT--EEEE-GGG-GGGTTEEEEEEEEE-SS-TTEEEEEETTS--HHHHHS-HHHHHHHHTSTTTTT.TSS----EEEEETTS-- CS
  Exonuc_X-T_C   1 RkKkkvaklidlasrkpllHvsgmfgaergcialvlplawhptnknavivvDLaeDpsellelsaeelrerlftkkeelaegeerlplklihiNkcP 97 
                   R+K+k+++lid++++kpl+Hvsgmfga+rg++++v+plawhp+n+na+ivvDLa D+++ll+l+a+ lrerl+t+k+el  ++  +p+kl+hiNkcP
    EHU00123.1 211 RNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPLAWHPDNRNALIVVDLAGDIAPLLTLDADSLRERLYTPKSEL-GDQPAVPVKLVHINKCP 306
                   99*****************************************************************************.899************** PP

                   EEEEGGGS-HHHHHHHT--HHHHHHHHHHHHH-THHHHHHHHHHTTS--S---SSGGGTGGGS---HHHHHHHHHHHHS-GGGTTTST-TTSSTHHH CS
  Exonuc_X-T_C  98 vlaplkvLkeedaerlgiDleaclknlkllraqkelaeklaevfaeeeefeasedvdlqLYggFfsdaDrrlmekirrlspeklaelelkfeDeRle 194
                   vlap+++L++eda rlgiD++ cl+nl++lr++++++ekl ++fae+e+f++sedvd+qLY+gFfsdaDr+ m++ir+++p++l +l+l+f+ +R+e
    EHU00123.1 307 VLAPANTLRPEDAGRLGIDRQFCLDNLATLRQHPDVREKLVAIFAEAEPFAPSEDVDTQLYDGFFSDADRAGMNIIRQTAPANLPALNLTFDSPRVE 403
                   ************************************************************************************************* PP

                   HHHHHHHHHH-GGG--HHHHHHHHHHHHHHS-HH......HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH CS
  Exonuc_X-T_C 195 eLlfryraRnfpetLseeEqkrWeefckqrLseeekgasltleeyfeeleelaeeaekdeeklklLkaLyeYae 268
                   +LlfryraRnfp tL+++Eq+rW +++++ L+ e      +++++  ele+la+ +e d+ekl+ LkaLy Ya+
    EHU00123.1 404 KLLFRYRARNFPGTLDDAEQQRWLQHRREVLNPE------KVQAFLMELESLASLHEGDAEKLSQLKALYRYAQ 471
                   *********************************7......599*****************************98 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   4.5e-30     4e-26       2     164 ..      12     188 ..      11     191 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 4.5e-30
                 EEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHH..HHHHHHHHHHHHTCCCETT.TCEEEE CS
     RNase_T   2 viDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfke..vleefkellrklallvahn.aafdvg 97 
                 ++D+Et+g+++ ++d++ ++a  ++d+++n ige+ +fy++p +++  ++e++++tgit++ +  ++ +++  +++ ++ +  + +++v++n ++fd +
  EHU00123.1  12 FHDYETFGTSP-QRDRPAQFAGLRTDSEFNPIGEPEVFYCRPPDDYLPQPEAVMITGITPQLAASRGVNEAefAARIHALFTTEQTCVVGYNnVRFDDE 109
                 79*********.9***********************************************9976666666568999999999999************** PP

                 SSHHHHHHHHHHHHH....HHHHCSEHCECHHHHHHHHHC....HHHHHHHHHTTCHSSSS....TSSHHHHHHHHHHH CS
     RNase_T  98 flraadkrilkkevp....krnqfldtlildkatlkelar....tsldklaeklgleedgr....aHrAldDaeatakl 164
                 ++r+ ++r+++ ++     + n+ +d l++++a+++ +++     ++d+   +++le+ ++    aH++ +Da+  +++
  EHU00123.1 110 VTRNIFYRNFYDPYGwswqNGNSRWDLLDVMRACYALRPEginwPENDDGFPSFRLEHLTKangvAHENAHDAMSDVYV 188
                 ************98899*9*************************99999999999999998888988888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3676.85
//
Query:       EHU00124.1  [L=451]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-133  445.1  43.6   2.7e-133  444.9  43.6    1.0  1  GntP_permease    GntP family permease
    1.4e-15   57.3  44.9    4.5e-15   55.6  44.9    1.8  1  CitMHS           Citrate transporter
  ------ inclusion threshold ------
       0.18   12.0  23.4        0.4   10.9  12.2    3.6  2  Na_H_antiport_2  Na+-H+ antiporter family


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.9  43.6  4.5e-137  2.7e-133       3     436 ..       7     447 ..       4     451 .] 0.93

  Alignments for each domain:
  == domain 1  score: 444.9 bits;  conditional E-value: 4.5e-137
  GntP_permease   3 llivligvilllllviklklnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkkvq 98 
                    l i+ +++++llllvik+k+++fvaLl+vsllv++++G+p++k++++i +G+Gg lG+++iii+lGamlG ++e sG+ae++a+ ++k+lg k++ 
     EHU00124.1   7 LAIATASIVILLLLVIKAKVHPFVALLIVSLLVAIATGIPAEKIMETIISGMGGLLGHITIIIVLGAMLGAIIEASGGAESLAQRFSKTLGLKRTV 102
                    5556677***************************************************************************************** PP

  GntP_permease  99 walvlagfivgialFfevglvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptviiagpllk 194
                    +al++a+fi+gi++Ffevg++++ipl++ ++k a++s+lk+g+p+++ +++vh++lp hPg+ a+a +l+ d+G++++ G++v++p+ i++  + k
     EHU00124.1 103 AALTMAAFILGIPVFFEVGFIIVIPLIYGFTKVARVSPLKFGLPMAGVMLTVHVALPTHPGAAAAAAILHTDMGWLMMLGILVSVPVGILGYYVAK 198
                    ******************************************************************************************888888 PP

  GntP_permease 195 kflkevvkeeee...laeeaeeksreekel..Psfglsll.tillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlglrrg 284
                     ++++  + + e   + + a+ +  ++k+   P  +l+++ +i++P+vl+++ t+++ ll+++s +++v+++iG p +allial +a ++lglrrg
     EHU00124.1 199 AMNRRQYHLSVEvleQLQMAKPEGVQKKNEpaPPGALTISgLIVVPIVLIVAGTLSHSLLTEDSLLRKVMTVIGTPPIALLIALGLAAWLLGLRRG 294
                    87777666666644423333333344444301334555543799**************************************************** PP

  GntP_permease 285 ksikkvldileealksiaiilliigaGGafkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlpgvnla 380
                    +s++k+ d++++a+   a+++l+ gaGGaf++vlv+sgvg+ala++l++l+l++i +af+++++lr+++GsatVa+lt++gl++ +++ + +++ +
     EHU00124.1 295 WSKDKLEDLTGRAIPGSANVILVAGAGGAFGKVLVESGVGNALARALETLHLPLIPAAFILSLALRASQGSATVAILTTSGLLTQAVTGIDDMHRV 390
                    ************************************************************************************************ PP

  GntP_permease 381 llvlaigaGslilshvnDagFWlvkeylgltvketlktwtvletilsvvgliivl.l 436
                    l++la+++G+l lshvnDagFW+v++ylgl+v++ lktwtvl+t++++ g+++++ l
     EHU00124.1 391 LVTLAACFGGLGLSHVNDAGFWVVTRYLGLSVADGLKTWTVLTTLMGLSGFALTWaL 447
                    *****************************************************9944 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6  44.9   7.6e-19   4.5e-15       2     299 ..      18     396 ..      16     397 .. 0.67

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 7.6e-19
                 xxxxxxx.....xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   2 vllilek.....lrldvvallvlvll.......vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsaf 88 
                 +ll++++     ++l +v+llv++++       + ti + + g+   i+++++++ ++ga++e +G++++la+++ +  g kr+ +++l +++++l+  
  EHU00124.1  18 LLLVIKAkvhpfVALLIVSLLVAIATgipaekiMETIISGMGGLLGHITIIIVLGAMLGAIIEASGGAESLAQRFSKTLGLKRT-VAALTMAAFILGIP 115
                 5566666566667777777777777777766666666667777777777********************************999.999********666 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  89 vsndgvvlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraa........arpglslpnllllalllvgllplvllfmfgvalalpv 178
                 v + + ++i+ip++    k  ++ +pl +    +l+++   +++++  pt+++a        +++g  ++ ++l+ + + +l + v  +m+ + ++l v
  EHU00124.1 116 VFFEVGFIIVIPLIYGFTKV-ARVSPLkF----GLPMAGVMLTVHVALPTHPGAaaaaailhTDMGWLMMLGILVSVPVGILGYYVAKAMNRRQYHLSV 209
                 656****************5.89999955....555555555889999**************7777777777776665555544444444444444444 PP

                 xxx...............................................................................xxxxxxxxxxxxxxxxx RF
      CitMHS 179 nap...............................................................................kvkkqkaiieaiarsll 198
                 ++                                                                                +    k+ +e ++ +++
  EHU00124.1 210 EVLeqlqmakpegvqkknepappgaltisglivvpivlivagtlshslltedsllrkvmtvigtppiallialglaawllglRRGWSKDKLEDLTGRAI 308
                 444444444444444444444444444444444444444444444444443445555555555555555555555555555544444444444444455 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 199 pvatilllaykkveWsvlllfaGvfll.vgaleqtGilealadllga.ggplvalalvlglial.lsafisnvavaalmapialgmapalgllspspla 294
                 p  + +           + l+aG++++ +++l ++G+++ala +l++   pl+    ++++++l l+a +++++va+l++ ++l+ a + g+ +++ ++
  EHU00124.1 309 PGSANV-----------I-LVAGAGGAfGKVLVESGVGNALARALETlHLPLI---PAAFILSLaLRASQGSATVAILTTSGLLTQAVT-GIDDMHRVL 391
                 555544...........3.666666655*****************65543333...456666666********************5553.447888888 PP

                 xxxxx RF
      CitMHS 295 lalav 299
                 ++la+
  EHU00124.1 392 VTLAA 396
                 88886 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  12.2   6.7e-05       0.4       3      86 ..       9      95 ..       7      97 .. 0.81
   2 ?    7.1   0.7   0.00099       5.9       9      83 ..     267     341 ..     263     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
  Na_H_antiport_2  3 vviavlvmlvLsllr..vnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGaf.Avaisksgltdllvkkvikl 86
                     +  a +v+l+L +++  v+  +alli +l+  + +g++ e+++e+++sG+gg        ++lGa+  ++i  sg ++ l+++  k+
       EHU00124.1  9 IATASIVILLLLVIKakVHPFVALLIVSLLVAIATGIPAEKIMETIISGMGGLLGHITIIIVLGAMlGAIIEASGGAESLAQRFSKT 95
                     566778888888877447779***99999999********************98777778889986255678899999998887766 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00099
  Na_H_antiport_2   9 vmlvLsllrvnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltdllvkkv 83 
                      vm+v+    + +++al ++a + Gl  g s ++  +   + + g+a+v l     Gaf  ++ +sg+ ++l++++
       EHU00124.1 267 VMTVIGTPPIALLIALGLAAWLLGLRRGWSKDKLEDLTGRAIPGSANVILVAGAGGAFGKVLVESGVGNALARAL 341
                      6777777788899999999999999999998777777779*******************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3046.01
//
Query:       EHU00125.1  [L=261]
Description: hydroxypyruvate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-36  124.4   0.1    4.9e-36  124.2   0.1    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.1   2.7e-40   4.9e-36       1     210 []      21     219 ..      21     219 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 2.7e-40
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS...HHHHHHHHHHHHHHHHHHTBSEEEEEBCCG CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear...reesvdalkraielaaaLGapllvlhpGta 94 
                   +aaaa+aGf +vE+ +++ +p+        ++l+++l+++gl+++++++ +++ + +e   +a    ++++++++ ra+ +a+aL++p++++++   
    EHU00125.1  21 FAAAAQAGFSAVEFLFPYEYPA--------EQLKALLADNGLKLVLFNTAPGNVDAGEWGVSAIpgrEADARADIDRALAYARALDCPQVHIMAA-- 107
                   689*******************........8***************************9444446666779**********************88.. PP

                   BCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC.....HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEE CS
  AP_endonuc_2  95 gagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd.....eelarlldavdspnvgvclDtgHlliaeedvddalraladrikhv 186
                   + +p+ +++  +e+++++++ +a+ +++++++l++E l++++  + +      +++++ d +d+pnv  +lD +H++i  +++ +++r++a r++hv
    EHU00125.1 108 TVPPGADRQRYVETFIRNMRYAAERFAPYNIRLLIEALNPTTK-PHYlyasqYQTLEMTDLIDRPNVFTQLDLFHAQIVDGNLSHLIRHYAGRYRHV 203
                   99***************************************96.55569************************************************ PP

                   EE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 187 HikDakgdlgagrdrhvpigeGei 210
                   +i        a  + +++++eGei
    EHU00125.1 204 QI--------AAAPSRHEPDEGEI 219
                   **........67777999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1868.43
//
Query:       EHU00126.1  [L=208]
Description: putative class II aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-43  146.7   0.0    8.2e-43  146.5   0.0    1.0  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   4.6e-47   8.2e-43       1     184 [.       8     185 ..       8     187 .. 0.94

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 4.6e-47
                  HHHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHH CS
  Aldolase_II   1 eelaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaa 98 
                  ee+++++  +++rg+++g +Gn+S+ ++ ++++l tp+g  ++el+ae l  v l+ ge + g     kps+e+++H+a+y ++pd+ravvH+Hs+++
   EHU00126.1   8 EEMVRLGASFFQRGYATGSAGNLSLLLD-DGTLLATPTGSCLGELDAERLSNVTLQ-GEWIAG----DKPSKEIAFHRALYLNNPDCRAVVHLHSHYL 99 
                  589***********************99.99999*********************9.****55....59***************************** PP

                  HHHHTCC...STSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHHHHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHH CS
  Aldolase_II  99 valsala...gkeglppltqeaaklllgdevpvipyaapgteelgealaealkedakavllrnHGlltvGetleeAvalaetleeaaei 184
                  +als+l+    ++ ++p+t++  +++  ++vpv+py++pg+ +l+e+la       +a ll+nHG+++vG+tl+eA++++e+lee+a++
   EHU00126.1 100 TALSCLQhldSQNCIRPFTPYVVMRV--GDVPVVPYYKPGDARLAEDLALLA-PRYRAFLLANHGPVVVGKTLREAADNTEELEETARL 185
                  ****9889997788999*****9966..88**************99999855.5889******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1490.29
//
Query:       EHU00127.1  [L=420]
Description: uncharacterized DUF1537 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-69  234.3   0.0    2.3e-69  233.6   0.0    1.4  1  SBD_N     Sugar-binding N-terminal domain
    1.3e-41  142.9   0.5    8.7e-41  140.3   0.0    2.1  2  NBD_C     Nucleotide-binding C-terminal domain
  ------ inclusion threshold ------
      0.018   15.0   0.1       0.04   13.9   0.1    1.6  1  ChW       Clostridial hydrophobic W


Domain annotation for each model (and alignments):
>> SBD_N  Sugar-binding N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.0   3.8e-73   2.3e-69       1     226 [.       3     226 ..       3     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 233.6 bits;  conditional E-value: 3.8e-73
                 EEEEESSHHHHHHHHHHHHCTT--EEEEC...SGGC-.G-SSEEEEE---TTS-HHHHHHHHHHHHHHHHHTT.-SEEEE..TC--TTTTSTHHHHHHH CS
       SBD_N   1 lvviaDDlTGaqdvaaqlakhglrtllll...eaeae.eeadavviatnsRalppeeaaarvrealkalkaagaaklsykvvSrfDStlrGnigaevda 95 
                 l+viaDD+TGa+d+a++l+++gl+t+++    e++ + ++a+a+v++++sR+++p+ a++++ +al++l+a+g++++++k++S+fDSt  Gnig+++da
  EHU00127.1   3 LGVIADDFTGATDIASFLVQNGLSTIQFNgipEQT-TvPDAQAIVVSLKSRSCAPALAVSQSLAALRWLQARGCERFYFKYCSTFDSTAAGNIGPVTDA 100
                 68**************************7564333.2577889******************************************************** PP

                 HHHHH...-..EEEE--BGGGTEEEETTEEEETTEEGGGSGGGC-SSS----SBHHHHHHCC-SSEEEEE-HHHHTTTCHHHHHHHHHHHHCTECEEEE CS
       SBD_N  96 ladal...lgpaivvPafpeggRttvdgvlfvegvpleetefardpltpmkesdLrdlleeqtkekvglidletlaegaealaealeallaegervvvv 191
                 l++al   l  ++++Pa+p +gRt+++g+lfv+  +l+e+ ++++p+tpm++s+L +l++ q++ k+gli+l+t+++ga a++e+le+l+a+g++++v+
  EHU00127.1 101 LMAALnetL--TVICPALPVNGRTVYQGYLFVGEHLLSESGMRHHPVTPMTDSNLLRLMACQSTGKAGLIPLATVDQGAGAITEQLEHLRAQGVNYAVI 197
                 *****4443..**************************************************************************************** PP

                 -BSSCHHHHHHHHH.HTT..TTT-SEEEESCHHHH CS
       SBD_N 192 Davseedlaviaealleaaeagkrfllvgaaglaa 226
                 D+++e++l + +ea           l++g++gla 
  EHU00127.1 198 DTLTEQHLLNQGEA------LTSMRLVTGGSGLAI 226
                 **************......3446799*****986 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.11   6.6e+02      11      34 ..     180     203 ..     177     219 .. 0.63
   2 !  140.3   0.0   1.5e-44   8.7e-41       1     170 []     254     410 ..     254     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
                 HHHHHHHHCTS..CTSEEEEEEHHH CS
       NBD_C  11 TtaQlaallkeg.esvpvleldvea 34 
                  t+Ql++l+++g +  +v++  +e+
  EHU00127.1 180 ITEQLEHLRAQGvN-YAVIDTLTEQ 203
                 589*****988632.3444333333 PP

  == domain 2  score: 140.3 bits;  conditional E-value: 1.5e-44
                 EEEEE--SHHHHHHHHHHCTS.CTSEEEEEEHHHHHSCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEECTGHHHH.HH---HHCCC-HHHHHHHHHHHH CS
       NBD_C   1 lvvvGScspkTtaQlaallkegesvpvleldvealledeesaeaeieraleqaeeallaagkdvlvytsrepedvrdaleslqaelglerageriaaal 99 
                 +v++GScsp+T++Q++a+++++   p+ e++ve++l+d    e+++ ++++++ e+  ++  +++++++++++++    +s+q+++g++r++e++++++
  EHU00127.1 254 VVLSGSCSPMTNRQVNAYRQQA---PAREIHVERCLND----EQYAGALCDWVVEHA-DGPLAPMLFATADAQQL----QSIQRHFGAQRSSEAVEQLF 340
                 69****************9773...777********65....789999********6.33999******999988....46999*************** PP

                 HHHHHHHHHCTECEEEEESHHHHHHHHHHCT--EEEEEEEEETTEEEEEESSSSS-EEEEE-TT-S-TTHH CS
       NBD_C 100 aeiarrlvergvrrlviaGGdtssavlkaLgvkgleilgeiapgvplgsaigadglpvvlKgGnvGdedtl 170
                 a++ar+l  rg +r+++aGG+ts+ v++ Lgv++++i++ i+pgvp+++ i ++ l ++lK+Gn+Gde+++
  EHU00127.1 341 AQVARDLQSRGWQRFIVAGGETSGVVAQSLGVTAFHIGPVISPGVPWVRDI-QQPLSLALKSGNFGDEQFF 410
                 *******999*****************************************.889**************98 PP

>> ChW  Clostridial hydrophobic W
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   6.6e-06      0.04       3      31 ..     348     377 ..     347     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-06
         ChW   3 QniGWqnwv.kdGeiaGTvGqglRlEAiqI 31 
                 Q  GWq  + + Ge++G v q+l + A+ I
  EHU00127.1 348 QSRGWQRFIvAGGETSGVVAQSLGVTAFHI 377
                 999***9855****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3171.02
//
Query:       EHU00128.1  [L=301]
Description: NAD-binding dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-38  132.4   2.5    2.4e-38  131.8   2.5    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    9.5e-34  116.3   2.1      1e-33  116.2   0.4    1.9  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    1.8e-05   24.7   0.4      4e-05   23.6   0.1    1.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    0.00017   22.1   0.4      0.001   19.6   0.1    2.2  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0011   18.4   0.8     0.0014   17.9   0.6    1.6  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0089   16.3   0.0      0.017   15.3   0.0    1.6  1  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
      0.045   13.1   0.0      0.067   12.6   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.051   13.2   0.0       0.14   11.8   0.0    1.7  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   2.5   1.1e-41   2.4e-38       1     156 [.       5     164 ..       5     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 1.1e-41
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHH.HHHHHCSEEEE-SSSHHHHHHHHHS...HCCC--TT-EEEE-S-- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesie.elvasldvvitmvkagkavdevieg...llealkkgdilidgsts 92 
                    +i +iGlG MG+  a+ +++ag  + +++++++++e+l ++ga+ a+s + +++++ld+v+++v + ++v+++++g   l+++lk+g+ ++ +st 
     EHU00128.1   5 NICVIGLGSMGMGAAQSCIRAGLATWGVDLNPQACETLRQAGARDAQSSAhAFAEHLDAVLLLVVNARQVNAILFGeqgLAARLKPGTAVMVSSTL 100
                    699***************************************887776663888889*************************************** PP

                    -HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE CS
  NAD_binding_2  93 spedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthv 156
                    s++d++++a++l++ +l +ldaPVSGG+++A++G++++m++Gs++af++++pvl+a++akv++v
     EHU00128.1 101 SAQDAQQIAARLADCQLLMLDAPVSGGAAKAASGEMTVMASGSDAAFAALQPVLDAVAAKVYRV 164
                    ***********************************************************99854 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.1   4.7e+03      87     117 ..      24      54 ..      17      57 .. 0.74
   2 !  116.2   0.4   4.5e-37     1e-33       1     121 [.     169     288 ..     169     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
  NAD_binding_11  87 eagaplpllalaeqlyaaaaaegggdaDhsa 117
                     +ag+++  + l  q  ++++++g +da+ sa
      EHU00128.1  24 RAGLATWGVDLNPQACETLRQAGARDAQSSA 54 
                     6777788888888888888888888887765 PP

  == domain 2  score: 116.2 bits;  conditional E-value: 4.5e-37
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     G+G++vK++++ll+++++aa +Ea++la++aG+ +++++ev+++++g+s+++en++  +v+++d++p++a+d+++KDl+l+ ++a+++++plpl+
      EHU00128.1 169 GQGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDTMYEVVTNAAGNSWMFENRMR-HVVDGDYRPKSAMDIFVKDLNLVADTAKALHFPLPLA 262
                     99******************************************************8.7************************************ PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaivrl 121
                      +a +++ +a+++g g +D+sa++++
      EHU00128.1 263 FTALNMFTEASNAGFGREDDSAVIKI 288
                     ***********************996 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.8e-08     4e-05       2      49 ..       6      53 ..       5      81 .. 0.82
   2 ?   -2.6   0.0         2   4.5e+03      11      73 ..     189     251 ..     187     256 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.8e-08
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCC CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiekslekl 49
                + viG G mG g a+ +++agl +  vd +++a e+ +++ ++  ++ 
  EHU00128.1  6 ICVIGLGSMGMGAAQSCIRAGLATWGVDLNPQACETLRQAGARDAQSS 53
                89*********************************9999887755443 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
                 HHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-H CS
     3HCDH_N  11 GagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdl 73 
                 Ga+  a++a+ag++   +      ++    + e++++++v      ++ ++  ++ ++  +d+
  EHU00128.1 189 GAEAMALAARAGIPLDTMYEVVTNAAGNSWMFENRMRHVVDGDYRPKSAMDIFVKDLNLVADT 251
                 556666777777777544333333333444555555555555555555555555555555555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   4.6e-07     0.001       2      69 ..       6      68 ..       5      78 .. 0.90
   2 ?   -0.3   0.0      0.76   1.7e+03      26      71 ..      92     152 ..      79     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.6e-07
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlav 69
                   i++iG G+mg + a+ +++ag      + + + np+  e l+++  +++++ ++   ae+ d v+l v
     EHU00128.1  6 ICVIGLGSMGMGAAQSCIRAG---LATW-GVDLNPQACETLRQAGARDAQS-SAHAFAEHLDAVLLLV 68
                   99*******************...7777.88***********999999999.999999****999977 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.76
                    GCEEEEEESSCCCHHHHHHHHC...............-EEECECHHHHHHH-SEEEE-S-H CS
  F420_oxidored  26 heivvansrnpekaeelaeelg...............vkvtavdneeaaeeadvvvlavkp 71 
                    + ++v ++ + + a+++a++l                +k+ +++   +a+ +d  + a++p
     EHU00128.1  92 TAVMVSSTLSAQDAQQIAARLAdcqllmldapvsggaAKAASGEMTVMASGSDAAFAALQP 152
                    6677777777777777777776666666666666666555555666666666666666655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.6   6.5e-07    0.0014      28      96 ..       3      68 ..       1     190 [. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.5e-07
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEE CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvi 96
                 ++++ viG G  G+ A++ + + g  +  +D++p++ e l++ ga+  +   s+++++ae++  + +++
   EHU00128.1  3 ASNICVIGLGSMGMGAAQSCIRAGLATWGVDLNPQACETLRQAGARDAQ---SSAHAFAEHLDAVLLLV 68
                 6789******************************************544...45555555555444333 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.7e-06     0.017       1      51 [.       6      49 ..       6     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.7e-06
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTS CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatd 51
                i +iGlG +G+  a+   ++g    ++d +++++e+lr+ g++       d
  EHU00128.1  6 ICVIGLGSMGMGAAQSCIRAGLATWGVDLNPQACETLRQAGAR-------D 49
                68*****************663599*************88854.......3 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     3e-05     0.067      37     124 ..       4      95 ..       1     121 [. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3e-05
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC..EECSHHHHHHH-SEEEE-S.--STTTTTSBSHHHHH.CSTTTEEEE CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv..elvsleellaesDivslhl.pltpetrhlinaeela.kmkkgaili 124
                   + +++iGlG++G  +a+ +   g+   ++d ++++ e+ ++ g+     s +++ ++ D v l + ++ + +  l++++ la ++k+g  ++
    EHU00128.1   4 SNICVIGLGSMGMGAAQSCIRAGLATWGVDLNPQACETLRQAGArdAQSSAHAFAEHLDAVLLLVvNARQVNAILFGEQGLAaRLKPGTAVM 95 
                   6799******************************9998888888423448899999999887765156666777778777752567766655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.1e-05      0.14       2      41 ..       5      44 ..       4      56 .. 0.94
   2 ?   -2.2   0.0       1.1   2.6e+03     108     131 ..      85     108 ..      48     124 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvdklns 41
                    +i+viGlG +G+  a    ++g    gvD + ++ ++l++
      EHU00128.1  5 NICVIGLGSMGMGAAQSCIRAGLATWGVDLNPQACETLRQ 44
                    8*********************************999987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                     HHHHHCEEEEEE-S---TTHHHHC CS
  UDPG_MGDP_dh_N 108 aealkkgkvvvvkSTvpvgtaeel 131
                     a  lk g+ v+v ST   + a+++
      EHU00128.1  85 AARLKPGTAVMVSSTLSAQDAQQI 108
                     444555556666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2189.19
//
Query:       EHU00129.1  [L=255]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-50  170.0   0.0    6.4e-50  169.2   0.0    1.3  1  DeoRC           DeoR C terminal sensor domain
    3.1e-18   65.3   0.4    6.4e-18   64.2   0.4    1.5  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    1.1e-10   41.2   0.1      2e-10   40.4   0.1    1.4  1  HTH_11          HTH domain
    1.5e-05   24.4   0.1    0.00012   21.6   0.0    2.2  2  HTH_24          Winged helix-turn-helix DNA-binding
    4.7e-05   23.0   0.3     0.0001   21.9   0.3    1.6  1  GntR            Bacterial regulatory proteins, gntR family
    0.00015   21.5   0.1    0.00031   20.4   0.1    1.6  1  HTH_23          Homeodomain-like domain
    0.00016   21.6   0.1    0.00043   20.2   0.1    1.7  1  MarR            MarR family
    0.00022   21.5   0.1    0.00045   20.5   0.1    1.5  1  Rrf2            Transcriptional regulator
    0.00069   19.7   0.0     0.0018   18.4   0.0    1.7  1  HTH_28          Helix-turn-helix domain
    0.00069   19.5   0.4     0.0017   18.2   0.4    1.6  1  MarR_2          MarR family
     0.0016   18.5   2.2     0.0024   17.9   0.1    2.4  3  HTH_20          Helix-turn-helix domain
     0.0031   17.0   0.4     0.0073   15.8   0.4    1.7  1  Sigma70_r4      Sigma-70, region 4
     0.0034   17.1   0.1     0.0075   16.0   0.1    1.5  1  HTH_IclR        IclR helix-turn-helix domain
     0.0037   17.5   0.3     0.0071   16.5   0.3    1.4  1  PaaX            PaaX-like protein
     0.0039   17.0   0.1      0.011   15.6   0.1    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.004   17.1   0.0      0.008   16.2   0.0    1.4  1  HTH_Mga         M protein trans-acting positive regulator (MG
     0.0059   16.7   0.0       0.35   11.1   0.0    2.7  2  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
     0.0065   16.3   0.1      0.012   15.5   0.1    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
       0.01   15.7   0.8      0.032   14.1   0.1    2.2  2  HTH_5           Bacterial regulatory protein, arsR family
      0.012   15.8   0.1      0.026   14.7   0.1    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.021   14.6   0.0       0.14   11.9   0.1    2.3  2  HTH_38          Helix-turn-helix domain
      0.034   13.5   0.1      0.084   12.3   0.1    1.6  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.038   13.6   0.0      0.056   13.0   0.0    1.2  1  DDRGK           DDRGK domain
      0.068   12.9   0.0       0.17   11.6   0.0    1.7  1  HTH_psq         helix-turn-helix, Psq domain
       0.12   12.3   0.1       0.27   11.2   0.1    1.5  1  DUF977          Bacterial protein of unknown function (DUF977
       0.21   12.2   0.0       0.79   10.3   0.0    1.9  2  Mga             Mga helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.0   9.2e-53   6.4e-50       4     159 ..      77     231 ..      75     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 9.2e-53
       DeoRC   4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgang 102
                 eeK++I+k+Aa+li+++++i+ldaGtTtl+lar++a++++l vvTn+++v + L+e+++++vi++GG+v ++++s++g +a + lrq+ +d+af+++++
  EHU00129.1  77 EEKNAIGKLAAQLIPPDSCIYLDAGTTTLALAREIADREDLLVVTNDFMVTNLLMEASRCRVIHTGGTVCRDNRSCIGDAAARHLRQLAIDIAFVSTSS 175
                 89************************************************************************************************* PP

       DeoRC 103 idaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 +   +gl+t+de++++vk+a+++ +++ +ll DssK++k a+   ++le++d+++tD
  EHU00129.1 176 WGL-RGLFTPDEDKVAVKQAVCDVSSKRVLLSDSSKYDKIATWLALPLEKFDVIVTD 231
                 **9.7***************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.4   9.3e-21   6.4e-18       1      55 [.       6      60 ..       6      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 9.3e-21
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                R++qil l++++g +s+ el+e++gvS +TiRRD ++Leeqg++  + GG++s +
  EHU00129.1  6 RHQQILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAVLSVSGGVRSAN 60
                9**************************************************9975 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   2.9e-13     2e-10       1      53 [.       6      55 ..       6      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.9e-13
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                R +qil l+ ++rg +s++eL e+++vS +t+rrd+++Lee+g  + s++g G
  EHU00129.1  6 RHQQILALV-AERGVMSIAELTERFGVSHMTIRRDVQKLEEQG-AVLSVSG-G 55
                889******.*********************************.7777777.6 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-07   0.00012       5      45 ..       7      47 ..       5      49 .. 0.94
   2 ?   -0.2   0.0       1.1   7.3e+02      11      27 ..      95     111 ..      94     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-07
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeG 45
                + +IL l+ + + +s++eL er g+S  t++r +++Lee+G
  EHU00129.1  7 HQQILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQG 47
                689************************************99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      HTH_24  11 lLqknprisqreLAerl 27 
                 +++ +++++   LA+++
  EHU00129.1  95 CIYLDAGTTTLALAREI 111
                 78889*********986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   1.5e-07    0.0001      26      59 ..      21      54 ..       8      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqg 59
                s  eL ++fgVs++t+R+  ++Le++g v + +g
  EHU00129.1 21 SIAELTERFGVSHMTIRRDVQKLEEQGAVLSVSG 54
                789**************************99887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   4.5e-07   0.00031       4      45 ..       4      47 ..       1      50 [. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.5e-07
      HTH_23  4 ereRlrillllae..GlsvreIAreLgvsrrTvyrwlkryreeG 45
                ++++++il l+ae   +s++e  +++gvs++T++r +++ +e G
  EHU00129.1  4 VERHQQILALVAErgVMSIAELTERFGVSHMTIRRDVQKLEEQG 47
                6899******************************9666665555 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   6.2e-07   0.00043       7      47 ..       9      49 ..       5      52 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 6.2e-07
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                 iL++++e+g +s++eL +++gvs +t+ r + +Le++G +
  EHU00129.1  9 QILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAV 49
                59*************************************87 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   6.6e-07   0.00045      17      72 ..      11      67 ..       8      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.6e-07
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT.T-TCEEESSHCC CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrG.kgGGyrLakppe 72
                La+ +e++ +s++e+ er+++s+  +++ ++kL+++g v sv G ++   rLa +p+
  EHU00129.1 11 LALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAVLSVSGgVRSANRLASEPS 67
                788888999*******************************99862566666776666 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.6e-06    0.0018       4      41 ..       9      48 ..       8      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.6e-06
      HTH_28  4 eiiklla.aGh.svreaArelgisrrtvyrWikryeegGi 41
                +i+ l+a +G+ s++e+ +++g+s+ t++r ++++ee+G 
  EHU00129.1  9 QILALVAeRGVmSIAELTERFGVSHMTIRRDVQKLEEQGA 48
                689999977999*************************994 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.4   2.5e-06    0.0017       9      53 ..       9      51 ..       6      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.5e-06
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                ++La ++ r+   ++++el++r+g+s+ ++ r +++L+++G v  
  EHU00129.1  9 QILALVAERGV--MSIAELTERFGVSHMTIRRDVQKLEEQGAVLS 51
                78999999986..8***************************8854 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.5e-06    0.0024      15      57 ..      10      52 ..       7      55 .. 0.92
   2 ?   -2.2   0.0       6.6   4.6e+03      22      34 ..      99     111 ..      95     117 .. 0.74
   3 ?   -2.2   0.0       6.5   4.5e+03      41      48 ..     157     164 ..     155     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.5e-06
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                il++ a+++ ++ +el er+++s  t+++ +++Lee g+v +v
  EHU00129.1 10 ILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAVLSV 52
                8888899********************************9766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.6
                 CTTB-HHHHHHHH CS
      HTH_20  22 aegltaselaerl 34 
                 ++g t  +la+++
  EHU00129.1  99 DAGTTTLALAREI 111
                 7888888888875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.5
                 HHHHHHHH CS
      HTH_20  41 lsyHLrvL 48 
                 + +HLr+L
  EHU00129.1 157 AARHLRQL 164
                 579***99 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   1.1e-05    0.0073       7      39 ..       5      38 ..       4      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  7 ererevlelrf.geglTleEIgerlgiSrerVrq 39
                er++++l l+     ++ +E+ er+g+S +++r+
  EHU00129.1  5 ERHQQILALVAeRGVMSIAELTERFGVSHMTIRR 38
                8**********55559*****************7 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05    0.0075       2      48 ..       4      49 ..       3      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                ++R  +iL ++ae++  ++++el +r+g++  t +R +q L+e+G v
  EHU00129.1  4 VERHQQILALVAERGV-MSIAELTERFGVSHMTIRRDVQKLEEQGAV 49
                678889******9999.9***************************87 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3     1e-05    0.0071      24      67 ..      20      63 ..      12      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-05
        PaaX 24 gsLirllaelGiseslvRaalsRlakaGwlvrekegrrsfYrLs 67
                 s  +l++ +G+s +++R  +  l+++G + +   g rs  rL+
  EHU00129.1 20 MSIAELTERFGVSHMTIRRDVQKLEEQGAVLSVSGGVRSANRLA 63
                577899******************************99998887 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.5e-05     0.011       7      42 .]       9      44 ..       8      44 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +IL++  e + +s aeL er G+S  t++r v++Le
     EHU00129.1  9 QILALVAERGVMSIAELTERFGVSHMTIRRDVQKLE 44
                   8*********************************98 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05     0.008       5      45 ..       5      44 ..       4      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
     HTH_Mga  5 krklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                +r +++l+l+ e ++ +++ el ++ g s  t++ d+++L 
  EHU00129.1  5 ERHQQILALVAE-RGVMSIAELTERFGVSHMTIRRDVQKLE 44
                6889********.*************************997 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0005      0.35       1      31 [.       8      38 ..       8      48 .. 0.89
   2 ?    2.6   0.0      0.22   1.5e+02      13      26 ..     228     241 ..     222     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0005
     AbiEi_4  1 erlpelasrqvGlfttrelea.aGispsalrr 31
                +++++l++++ G+ + +el++  G+s +++rr
  EHU00129.1  8 QQILALVAER-GVMSIAELTErFGVSHMTIRR 38
                6899999777.8*******999*******998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.22
     AbiEi_4  13 lfttreleaaGisp 26 
                 ++t+++l aaG+ +
  EHU00129.1 228 IVTDDQLNAAGRNA 241
                 9**********976 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.7e-05     0.012      15      55 ..      11      52 ..       8      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
                HHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 15 laLl.klgpatadeiaeelgvprskvYevLrsLedkGlVere 55
                laL+ ++g +++ e+ e+ gv++ ++ + +++Le+ G V  +
  EHU00129.1 11 LALVaERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAVLSV 52
                57888*********************************9655 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.6e-05     0.032       6      43 ..       9      47 ..       7      51 .. 0.95
   2 ?   -2.1   0.1       5.2   3.6e+03      34      39 ..     159     164 ..     157     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
                HHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT CS
       HTH_5  6 kILklLae.gelcvcelaeelglsqstvShHLkkLreaG 43
                +IL l+ae g +++ el+e +g+s  t+++   kL+e+G
  EHU00129.1  9 QILALVAErGVMSIAELTERFGVSHMTIRRDVQKLEEQG 47
                79******999**************************99 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.2
                 HHHHHH CS
       HTH_5  34 hHLkkL 39 
                 +HL++L
  EHU00129.1 159 RHLRQL 164
                 8***98 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.7e-05     0.026      12      52 ..       9      49 ..       8      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-05
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                    +I+ l  e++v + ++l er +vs  ++   ++kLe++G v
      EHU00129.1  9 QILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAV 49
                    68888889******************************965 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00021      0.14      12      41 ..       9      40 ..       4      42 .. 0.86
   2 ?   -1.6   0.0       3.3   2.3e+03       5      18 ..      74      87 ..      72      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      HTH_38 12 eIerll.aeG.lslreIArrLgrspsTIsREl 41
                +I +l  ++G +s++e   r g+s+ TI R +
  EHU00129.1  9 QILALVaERGvMSIAELTERFGVSHMTIRRDV 40
                7888863799*******************966 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
      HTH_38  5 LsleeReeIerlla 18
                L  ee + I +l a
  EHU00129.1 74 LCNEEKNAIGKLAA 87
                7889*****99876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00012     0.084      17      46 ..       7      38 ..       7      38 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
  HTH_Tnp_ISL3 17 eayilellles..rsvkavArqlgvSwtTVwr 46
                  +++il+l+ e+  +s+++  +++gvS  T++r
    EHU00129.1  7 HQQILALVAERgvMSIAELTERFGVSHMTIRR 38
                  699***************************98 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.2e-05     0.056     102     143 ..       8      49 ..       4      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS CS
       DDRGK 102 eefinyikekKvvlleelavkfklktqevierikeLeeqgsl 143
                 +++++ + e+ v+ + el+ +f++++  ++  +++Leeqg +
  EHU00129.1   8 QQILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAV 49 
                 789999*********************************987 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.17      14      36 ..      17      39 ..      10      46 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
     HTH_psq 14 nGkmSirkAArkYgiPrsTLwrr 36
                +G mSi+++  ++g+++ T++r 
  EHU00129.1 17 RGVMSIAELTERFGVSHMTIRRD 39
                577*****************964 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0004      0.27      15      56 ..       8      49 ..       4      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
      DUF977 15 eriiGlvkkneritisdleritGvgrtsvrkylvdvlerGdl 56
                ++i+ lv +++ + i++l   +Gv + ++r+ ++   e+G +
  EHU00129.1  8 QQILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEEQGAV 49
                6899***************************99888777765 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0012      0.79      20      56 ..       9      45 ..       4      46 .. 0.92
   2 ?   -2.2   0.0       9.6   6.6e+03      21      40 ..      69      89 ..      63      97 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0012
                HHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHH CS
         Mga 20 qllkflfeeeevsieelaqelyiSestlkrkikelnk 56
                q+l+++ e+ ++si+el++++ +S  t+ r++++l++
  EHU00129.1  9 QILALVAERGVMSIAELTERFGVSHMTIRRDVQKLEE 45
                88999999************************99976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.6
                HHHHHH.HHSEEEHHHHHHHC CS
         Mga 21 llkflf.eeeevsieelaqel 40
                l k+ + +ee++ i +la++l
  EHU00129.1 69 LTKTALcNEEKNAIGKLAAQL 89
                556666478888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1973.71
//
Query:       EHU00130.1  [L=446]
Description: putative amino-acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-34  120.1  36.9    1.3e-34  119.7  36.9    1.1  1  AA_permease_2  Amino acid permease
    2.5e-32  112.1  37.1      3e-32  111.8  37.1    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7  36.9   1.5e-38   1.3e-34      19     385 ..      41     413 ..      18     444 .. 0.73

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1.5e-38
  AA_permease_2  19 ifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyllnalgpdlqgn 114
                    ++v+ +++ g  a++  + ++++++    +  y  l  ++p+ g +y+y+++a+++ v+f+++w+++++y++ ++ i++++a+++   l p +   
     EHU00130.1  41 GIVS-GLTDGHVATAYAFALIAILF---TAVSYGKLVRRFPSAGSAYTYAQKAISPHVGFMVGWSSLLDYLF-MPMINILLAKNYFETLVPGI--- 128
                    4444.23334444455555555555...45558899888*******************************99.99999999998888886654... PP

  AA_permease_2 115 twltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpg..vllgllivlwsfdGfesaa 208
                      ++ +++++++ + +l n++gik++a+++++++il ++ +++ + + +++ v +g     +   + f+++      ++ g +i ++sf Gf++++
     EHU00130.1 129 --PSWIFVVLLVGFMTLSNLKGIKTVANFNSVIVILQVV-VMVGITAMVIYGVAHGEGAGTVVSSKPFWSENAHVvpMITGATILCFSFLGFDGIS 221
                    ..56788899999999**********************6.55545544444444443332223333445444444357****************** PP

  AA_permease_2 209 nvseevkk..kdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlea 301
                    + see k   +++p+aif+ +li ++++++ + +++   pd + +++++++    ++++  +g k+++i + i+ ++ +l ++++a +g+sr+++ 
     EHU00130.1 222 SLSEETKDaeRTIPRAIFLTALIGGLMFIVASYFLQLYFPDiSRFKEPDSSQ--PEIMLYVAG-KALQIGILIFSVVTVLASGMAAHAGVSRLMYV 314
                    *****887679******************************55568887754..799999999.******************************** PP

  AA_permease_2 302 lardgvlP.rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigal....ilrkkrphlkr.........p 382
                    ++rdgv+P rff  ++ k+ +p+  +il+  v+ ++++ f l       + +++ ++g+++ ++++ ++++    +  k+++ lk          +
     EHU00130.1 315 MGRDGVFPeRFFGYIHpKWRTPSLNVILVGAVA-LMAINFDL------VTATALINFGALVAFTFVNLSVIaqywVREKRNKTLKDhvqylvlpmM 403
                    ********************************9.77766644......455555555555555555555551110333444444447665555443 PP

  AA_permease_2 383 gk.......i 385
                    g+       +
     EHU00130.1 404 GAltvgalwV 413
                    3333333330 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8  37.1   3.4e-36     3e-32       2     426 ..      23     415 ..      22     438 .. 0.79

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 3.4e-36
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v+++ l+ + + +lf   g+v +   +  +  ay++a + i+++++s g ++  +p++g++ytya++ ++p++Gf++G++ l+ +++  ++ +  a  
   EHU00130.1  23 VVMMGLAYMQPMTLFDTFGIVSGLTDG-HVATAYAFALIAILFTAVSYGKLVRRFPSAGSAYTYAQKAISPHVGFMVGWSSLLDYLFMPMINILLAKN 119
                  688889998888888666666554433.44459***********************************************9999999999999999** PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeega 197
                  +++ +  v+ +p  w++++++++++++ nl g+k  + +  ++ ++ ++ +++   + i ++a g+++       ++++ +       +         
   EHU00130.1 120 YFETL--VPGIP-SWIFVVLLVGFMTLSNLKGIKTVANFNSVIVILQVVVMVGITAMVIYGVAHGEGAGT----VVSSKPF------WSE-----NAH 199
                  *****..*****.*************************88777666666666655555544555544444....3333333......111.....234 PP

  AA_permease 198 fknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinav 295
                  +  +i ++ i+ f+f G+  +  +++E+kd e++iP+ai  + ++ +++++ +++++ l +p+ +         + s +  ++ +   ++l+  i ++
   EHU00130.1 200 VVPMITGATILCFSFLGFDGISSLSEETKDAERTIPRAIFLTALIGGLMFIVASYFLQLYFPDISRFKE-----PDSSQPEIMLYVAGKALQIGILIF 292
                  7778*********************************************************98774444.....445666888899999999****** PP

  AA_permease 296 iltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl..r 389
                  + +++l s++++ +  sR++y + +dg++P  +++  + k++ P   ++l+ +++l+a+ +  l +a     +   a+  + +l+ +++++ls +   
   EHU00130.1 293 SVVTVLASGMAAHAGVSRLMYVMGRDGVFPerFFGYIHPKWRTPSLNVILVGAVALMAI-NFDLVTA-----T---ALINFGALVAFTFVNLSVIaqY 381
                  *******************************77777789********999999998888.3333333.....3...4444444444444444444223 PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiil 426
                  + ++  ++++ + +  ++  +lp++  l++ al+  l
   EHU00130.1 382 WVRE--KRNKTL-KDHVQYLVLPMMGALTVGALWVNL 415
                  4444..233333.456788889999999999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3397.29
//
Query:       EHU00131.1  [L=54]
Description: hypothetical protein CKS_2302 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       145  (0.00808746); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 455.20
//
Query:       EHU00132.1  [L=448]
Description: gamma-Glu-putrescine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-84  281.7   0.0    8.9e-46  156.5   0.0    2.1  2  Gln-synt_C    Glutamine synthetase, catalytic domain
    2.2e-05   24.2   0.0    5.5e-05   23.0   0.0    1.7  1  Gln-synt_N_2  Glutamine synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   3.3e-40   2.9e-36       2     148 ..     133     278 ..     132     280 .. 0.97
   2 !  156.5   0.0     1e-49   8.9e-46     173     344 ..     278     443 ..     273     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 3.3e-40
                 T-HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECCCTE CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvdeaedlrreivealealgieveashhEvatgQ 100
                 ++PR+vl+r l++l+++Gl +vv++ElEF+l+dk++d  a++ ++++ ++ + +++++++++s++++d+++d++r+i + ++ +gi+++ + +E  +gQ
  EHU00132.1 133 VEPRNVLNRLLQQLRNRGLFPVVAVELEFYLVDKKRD--AEGYIQPPCAPGSDDRNRQSQVYSLDNLDHFADVLRDIDALARLQGIPADGALAEASPGQ 229
                 58**********************************9..5699*******99*********************************************** PP

                 EEEEE.--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS--- CS
  Gln-synt_C 101 vEinl.kfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGs 148
                 +Einl ++ d+l+a+D+++ +Kr++++vA++hg+tatFm+Kp+e+  Gs
  EHU00132.1 230 FEINLhHTRDVLSACDHAIQLKRLIRQVAENHGMTATFMAKPYEDYDGS 278
                 *****77789***********************************9998 PP

  == domain 2  score: 156.5 bits;  conditional E-value: 1e-49
                 GB-HHHHHHHHHHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--- CS
  Gln-synt_C 173 alselarhfigGllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipaskekakrvElRlpdasaNPYLalAallaAgldGienklep 271
                 + s l++  ++G+++ ++a++al+ap+vn ++R+vp+++ P  ++wg++NR+++lRip+++ +++r+E+R+++a+aNPYL++A++la+ l+G++++l +
  EHU00132.1 278 SDSPLLKRTLAGMIDLMPASMALLAPNVNAFRRFVPDAYVPLQASWGHNNRTVALRIPCGDLESRRIEYRVAGADANPYLVMATILAGMLHGLDTQLPL 376
                 478999********************************************************************************************* PP

                 -----S-SSSS-TTTHTSS-B--SSHHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHH CS
  Gln-synt_C 272 gepvekdlyelspeerkgieelPasleeAlealeedellkevlgeevieaylalkraEleeleeevsdweler 344
                 ++pv+++ +e++        +lP + ++Al a+e++  l+++lge++ + + ++k+ El ++e+ ++ +e+++
  EHU00132.1 377 PQPVKGNGHEAEGL------ALPIRQSDALYAFESSYPLQKLLGEKFAKVWFSCKNYELMQFERLITATEIDW 443
                 ***********997......4*************************************************987 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.1e-09   5.5e-05      13     107 .]      34     131 ..      24     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.1e-09
                   ----EEEEEEE-TTS-EEEEEEEGGGHHHHHTT-EEE-GGGGG--TTS---TT-S-S.SS--EEEEE-GGG-EEE---..SS.TTSEEEEEE-TTS- CS
  Gln-synt_N_2  13 kqveLieflyvdlaGvtrGkalplasLeekLasGiGltkatlalserdlidevedlg.pvGelrLvpdPasavalpya..Pd.aaallgdlvevdgt 105
                    +++ ++ l  dl+Gv rGk +p ++L ++L +G+ +  +  a+  +    e + lg ++Ge   +  P     +p a  P+ +a ll  + + dgt
    EHU00132.1  34 PETQYVDILLNDLNGVFRGKRIPVSAL-ARLEKGCYFPASVFAMDILGNTVEEAGLGqSLGEPDNLCLPVHGTLVPSAadPQhIAQLLLTMCNQDGT 129
                   4688999*******************9.59**************9987666666665389*99988888888888876235535669999******* PP

                   B- CS
  Gln-synt_N_2 106 Py 107
                   P+
    EHU00132.1 130 PF 131
                   97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3814.39
//
Query:       EHU00133.1  [L=253]
Description: gamma-glutamyl-GABA hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-61  207.4   0.5    2.5e-61  207.2   0.5    1.0  1  Peptidase_C26  Peptidase C26
    3.2e-13   49.9   0.0    6.1e-13   49.0   0.0    1.6  1  GATase         Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2   0.5   2.8e-65   2.5e-61       1     216 []       8     224 ..       8     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 207.2 bits;  conditional E-value: 2.8e-65
  Peptidase_C26   1 pvigitaneeslkkeavqdaeesylaasyveavekagglpvllpiee..deedvkaildkldgllltGgq.dvePslygeepsekeeeadpeRdal 93 
                    p+ig+++++++ + + vq ++++yl a     +  agg+p+ lp++    ++  +++++ ldg+lltG++  +eP lygee   +e ead++Rd+l
     EHU00133.1   8 PLIGVVMCQTHNQGHPVQSVHNKYLDA-----IVLAGGVPLALPHHLmaAPHLSENAMALLDGILLTGSPsHLEPWLYGEE--GEEPEADAGRDRL 96 
                    89******9888888887777777777.....9***********9764478899***************************..9999********* PP

  Peptidase_C26  94 elaLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhrehe.....q.saashavkvekgsllaellgseeievnslHhqaikelae 183
                     + Li +a+ ++vP+lgiCrG+q+l va GG ly+++++++++++h+++e     q +a++ha+++ +g+ll +llg+ +i vns+Hhq+i+e ++
     EHU00133.1  97 AFNLITHAVGKQVPLLGICRGMQELVVANGGALYRHLDHHPQFQRHHADEdaspeQtYAPAHAIQIAPGGLLDRLLGRASITVNSVHHQGIREAGS 192
                    ********************************************9999996666527*************************************** PP

  Peptidase_C26 184 elrveAvaeDgviEaieseeakafvlgvQwHPE 216
                    +++veA+a+Dg+iEa+++++++ f+l+vQwHPE
     EHU00133.1 193 QVHVEARAPDGLIEAVSLPAHP-FALAVQWHPE 224
                    ********************88.*********9 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   6.8e-17   6.1e-13      60     189 ..      97     242 ..      25     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 6.8e-17
                 HHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT.....................CGGTTTTSEEEEEEEEEEEEESGCH CS
      GATase  60 kieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet.....................allyglknevierhrHryevnpkel 137
                 + ++i++a ++++P+LGIC GmQ l+ + g+ +++    +hh + +r ++de                      ++l g   ++++   H   + +   
  EHU00133.1  97 AFNLITHAVGKQVPLLGICRGMQELVVANGGALYRHL--DHHPQFQRHHADEDaspeqtyapahaiqiapggllDRLLGR-ASITVNSVHHQGIRE--- 189
                 56789999***********************999555..34444444444434456666899999999999999888888.89999999******9... PP

                 HHTTEEEEEEEETTEEEEEEEEETT.T.EEEESSBTTSTTSTTHHHH.HHHHHHH CS
      GATase 138 epaglevtakseddeelmeiiekkn.p.fvgvQFHPEststpegpel.lfnflik 189
                   ++++v a+  d+  l+e++ ++  p + +vQ+HPE +++p  p++ lf+ +i+
  EHU00133.1 190 AGSQVHVEARAPDG--LIEAVSLPAhPfALAVQWHPEWQLKPATPSFaLFDDFIQ 242
                 89999999999776..6666666666*9***************998647887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2044.06
//
Query:       EHU00134.1  [L=185]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-17   62.1   0.1    4.9e-17   61.4   0.1    1.3  1  Cupin_2         Cupin domain
    3.6e-13   49.4   0.1    5.2e-13   48.8   0.1    1.3  1  HTH_3           Helix-turn-helix
    1.6e-11   44.4   0.2    3.4e-11   43.3   0.2    1.5  1  HTH_31          Helix-turn-helix domain
    5.8e-09   35.8   0.0    9.6e-09   35.1   0.0    1.3  1  HTH_19          Helix-turn-helix domain
    0.00019   21.6   0.0    0.00027   21.0   0.0    1.2  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
    0.00019   21.3   0.1    0.00064   19.6   0.1    1.8  2  HTH_37          Helix-turn-helix domain
    0.00063   20.1   0.1      0.002   18.5   0.0    1.8  2  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0032   17.3   0.1     0.0057   16.5   0.1    1.4  1  HTH_25          Helix-turn-helix domain
     0.0076   15.9   0.0      0.018   14.7   0.0    1.5  1  AraC_binding_2  AraC-binding-like domain
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.026   14.4   0.0    1.5  1  AraC_binding    AraC-like ligand binding domain
       0.03   14.5   0.0       0.05   13.8   0.0    1.3  1  Death           Death domain
      0.072   13.3   0.0        0.1   12.8   0.0    1.2  1  CENP-C_C        Mif2/CENP-C like
      0.082   12.6   0.0       0.14   11.9   0.0    1.3  1  Cupin_3         Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.1   3.6e-20   4.9e-17       2      69 ..     111     178 ..     110     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 3.6e-20
                 EEEEETTE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   2 lvelppGe.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 l++++pG+ +++  rH ge e++  leG++ l+v+g++++l+aG+s+++++g pH f N  d p+r+++
  EHU00134.1 111 LETYQPGAsTGEKLRHAGE-ETGTLLEGRILLEVNGQQFHLTAGESYVIDTGLPHSFTNQADVPCRIVS 178
                 789*****7777777****.**********************************************987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   3.8e-16   5.2e-13       1      53 [.      12      64 ..      12      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 3.8e-16
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                l+++R+  glsq+ +Ae++G++ s+is iE ++ +P ++tl+kl+k++g+sl+
  EHU00134.1 12 LAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLS 64
                789************************************************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.2   2.5e-14   3.4e-11       3      57 ..       9      62 ..       9      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.5e-14
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                G++L++ R+  GLsq+ vAe++g++ s +s +Eq +   p  ++l +l+ ++gl+
  EHU00134.1  9 GRRLAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKV-SPAVSTLQKLLKVYGLS 62
                89***********************************.6**************98 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     7e-12   9.6e-09       1      61 [.       9      68 ..       9      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 7e-12
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                G+rL ++R   gl+q+ +ae +g + s is iE +k   p  ++l+k+++ +g++l ++++
  EHU00134.1  9 GRRLAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKV-SPAVSTLQKLLKVYGLSLSAFFS 68
                9**********************************88.999***************99985 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     2e-07   0.00027      66     119 ..       4      58 ..       1      61 [. 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2e-07
  MqsA_antitoxin  66 aelvdpafiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalv.kllkl 119
                     a+++ +  +a++r+ ++l+qr +ae+ G    a s  e+ kv p ++++ kllk+
      EHU00134.1   4 AAQAPGRRLAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLqKLLKV 58 
                     555567889************************************9976267776 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   4.6e-07   0.00064      21      57 ..      10      46 ..       4      64 .. 0.81
   2 ?   -1.8   0.0       2.3   3.1e+03      31      49 ..     101     119 ..      96     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.6e-07
                HHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--T CS
      HTH_37 21 laiaeliekrelsqseaaqllgiaqPkvsrllrgkls 57
                +++a+++++++lsq+ +a+l g +++ +s +++ k+s
  EHU00134.1 10 RRLAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKVS 46
                779*****************************87776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
                 T--HHHHHHHHT--HHHHH CS
      HTH_37  31 elsqseaaqllgiaqPkvs 49 
                 + +++ + +ll++ qP  s
  EHU00134.1 101 GTKTRALGMLLETYQPGAS 119
                 5677888999999999877 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-06     0.002       1      55 [.      11      64 ..      11      68 .. 0.93
   2 ?   -1.6   0.0       2.7   3.7e+03      52      60 ..      80      88 ..      80      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-06
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpg 55
                +L ++ + +g+++ ++a+ +g++ + +s++ ++k+ ++  +tL+k+ ++ g +++
  EHU00134.1 11 RLAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKV-SPAVSTLQKLLKVYGLSLS 64
                688899999*************************6.*************998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
      HTH_26 52 ctpgDLley 60
                ++p+DLle+
  EHU00134.1 80 VRPEDLLEI 88
                589****96 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.1e-06    0.0057       1      51 [.      11      59 ..      11      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.1e-06
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHH CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnY 51
                rL + R+++gls + va+   +  + +  +E+d+++  p+   l+ +l+ Y
  EHU00134.1 11 RLAQIRQSMGLSQRRVAELAGLTHSAISTIEQDKVS--PAVSTLQKLLKVY 59
                699******************************654..5555556666555 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05     0.018      61     104 ..     134     177 ..     131     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
  AraC_binding_2  61 plsGraeveqggrevvlgpgdavvldpgrpyrlrwsadceqlvl 104
                      l+Gr  +e++g+++ l++g+  v+d+g p +++ +ad+ + ++
      EHU00134.1 134 LLEGRILLEVNGQQFHLTAGESYVIDTGLPHSFTNQADVPCRIV 177
                     699**********************************9987765 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.9e-05     0.026      29      69 ..     134     174 ..     109     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
                   EEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEE CS
  AraC_binding  29 vteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgw 69 
                    +eG+  l++ng++++l++G+   +  g pH++   ++ ++
    EHU00134.1 134 LLEGRILLEVNGQQFHLTAGESYVIDTGLPHSFTNQADVPC 174
                   6799999**************************98886554 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.6e-05      0.05       2      52 ..      10      54 ..       9      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                HHHHHHHCCSTCCSCCHHHHHHHTTSHHHHHHHHHHSSSTHHHHHHHHHHH CS
       Death  2 krlarildhpdplgkdWkelarkLglseeeidriekennslrsqsyalLql 52
                +rla+i+++   +g + +++a+  gl+++ i +ie++     s++++ Lq+
  EHU00134.1 10 RRLAQIRQS---MGLSQRRVAELAGLTHSAISTIEQDK---VSPAVSTLQK 54
                589999999...**************************...5555555553 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.5e-05       0.1      40      78 ..     135     173 ..     108     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
                 EESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS- CS
    CENP-C_C  40 iqGrvevtvsktsfvigkgsvFqvPagneysieNklnke 78 
                 ++Gr+  +v++++f ++ g ++ +  g   s++N+ +  
  EHU00134.1 135 LEGRILLEVNGQQFHLTAGESYVIDTGLPHSFTNQADVP 173
                 78********************************98765 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.9e-05      0.14      24      60 ..     127     162 ..     115     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.9e-05
                 SSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3  24 eedEfcyileGevkvtpeggetvelraGDlvvlpkgl 60 
                   +E+ ++leG++ +++ +g++++l aG + v+  gl
  EHU00134.1 127 AGEETGTLLEGRILLEV-NGQQFHLTAGESYVIDTGL 162
                 458999***********.**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1568.61
//
Query:       EHU00135.1  [L=425]
Description: FAD/NAD(P)-binding gamma-Glu-putrescine oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-46  160.2   0.1    1.2e-46  160.0   0.1    1.0  1  DAO             FAD dependent oxidoreductase
    3.1e-06   26.7   0.3      6e-06   25.7   0.2    1.6  2  FAD_binding_3   FAD binding domain
    0.00053   20.2   1.4     0.0023   18.1   1.3    2.2  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00089   18.6   0.1     0.0015   17.9   0.1    1.3  1  Thi4            Thi4 family
     0.0044   16.2   0.5     0.0078   15.3   0.5    1.4  1  FAD_binding_2   FAD binding domain
     0.0076   15.5   0.0      0.012   14.9   0.0    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0078   15.9   0.2        1.1    8.9   0.1    2.2  2  ApbA            Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
      0.091   13.3   0.2       0.22   12.1   0.2    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.13   11.8   0.2        0.2   11.2   0.2    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.1   5.9e-50   1.2e-46       1     351 [.      28     379 ..      28     380 .. 0.84

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 5.9e-50
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS.........STHHSTHHHH.HHHHHHHHHHHHHHHHHSSTTSEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl.........rylpeasela.rlslealeelreleeelgididyrrtGll 87 
                 dv+iiG+G +Gls  ++L+++g  V+lle++ ++g gaSgrn+g+   ++         ry ++  +++  +++e+ + +r+  ++++i +dyr +G +
  EHU00135.1  28 DVCIIGAGFTGLSDGLFLTEAGydVVLLEAA-RVGYGASGRNGGQAVNSYsrdvdvieqRYGKDSAKMLgSMMFEGGDIIRDRIDRYAIACDYR-PGGI 124
                 9******************************.9999**********998988899998866666445555**********999999********.6666 PP

                 EEESSHHHHHHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCEEEEEE CS
         DAO  88 slaadeeelealdkllallleaglda.elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeed.gkvwgver 184
                 + a+++++++ l+ + a+++++g d  elld++ +r+    +++++g+l+++ +++++p  l+ + a+a++++G++i+e++ + +++ ++ +   +v  
  EHU00135.1 125 FAAFNRRQMAHLASQKAAWQRYGNDQlELLDERGIRREIG-SERYVGGLLDKRGAHLHPLNLALGEAEAIRRHGGRIYEQSAALSVSYDSpN---RV-- 217
                 66679999***9888888899**98889****98997775.679*****************************************9554344...55.. PP

                 ECT.EEEEEEEEEEE--GGGHH.HHHTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..EEETTTTEEEEEETTSEEEEEESSEEETTCSST CS
         DAO 185 ttp.gendaadavVnaaGawsd.llgll.keldlpispvrgqvlvlkplseklvspaailpvpe..tdddgrgvyvtprkdgrvlvGgtadeesgdddp 278
                 +t+ ge+ +a+ ++ a +a+   +   l ++l ++ +p+ +q+++++pls+      a+lp+     d +    y++ ++d+r+l Gg     +  +  
  EHU00135.1 218 KTAqGEV-SATFLIFAGNAYLPsE---LePRLSRKSMPCGSQIIATEPLSRDRAL--ALLPNNYsvEDSNYLLDYFRLTADNRLLYGGGV--VY--GA- 305
                 3443886.4488********6553...446666667************9994433..44554446799999999************9986..34..33. PP

                 SCSHHHHHHHHHHHHHHSGGGCGEE..EEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 279 evdeedidellealrklfPqlgdvl..rkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllae 351
                 + + + i  +++++ + fPql+dv+   +w+G    + +++p +g+    +++y+  G sghG+t+  ++Gkl++e
  EHU00135.1 306 REPGDVITMIRPKMLRTFPQLQDVKidFAWSGNFLlTLSRMPQFGRL--ENNVYFMQGDSGHGVTCTHLSGKLISE 379
                 557789**************97755327****555258********6..68**********************987 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2     3e-09     6e-06       1      40 [.      26      65 ..      26     153 .. 0.83
   2 ?   -2.4   0.0       1.1   2.1e+03      49      66 ..     150     167 ..     130     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3e-09
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                   ++dV+I+GaG +Gl+ +l+L+eaG +vvl+e  +  +  +
     EHU00135.1 26 QCDVCIIGAGFTGLSDGLFLTEAGYDVVLLEAARVGYGAS 65
                   59*****************************988776655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                    HHHHHHHTT-HHHHHHHS CS
  FAD_binding_3  49 tmellrqlGledrilaeg 66 
                     +ell+++G+ ++i +e 
     EHU00135.1 150 QLELLDERGIRREIGSER 167
                    589*******99998875 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.3   1.1e-06    0.0023       1      42 [.      31      70 ..      31      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg 42
                   I+GaG++Gl+   +L++ag+dv+lle++ r+ G  as +++g
     EHU00135.1 31 IIGAGFTGLSDGLFLTEAGYDVVLLEAA-RV-GYGASGRNGG 70
                   9*************************97.55.4555555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   7.4e-07    0.0015      13      64 ..      22      73 ..      17     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.4e-07
                HHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES.SSS--TTTTTTSTTB CS
        Thi4 13 lkyaesDvvivGaGssGLtaayylakkpdlkvailer.svspGGGawlGGqlf 64
                ++ ++ Dv i+GaG +GL+ +  l+++ +  v++le+ +v +G     GGq  
  EHU00135.1 22 QESIQCDVCIIGAGFTGLSDGLFLTEA-GYDVVLLEAaRVGYGASGRNGGQAV 73
                667899********************9.********63799999888999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   3.9e-06    0.0078       1      38 [.      28      65 ..      28      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.9e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   Dv +iG+G+ GL+ +l ++eaG +v+++e + +  ga+
     EHU00135.1 28 DVCIIGAGFTGLSDGLFLTEAGYDVVLLEAARVGYGAS 65
                   99***************************988755555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.9e-06     0.012       2     173 ..      28      57 ..      12      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.9e-06
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  dv++iG+G+ Gl+  l+l +ag++v+l+e                                                                     
   EHU00135.1  28 DVCIIGAGFTGLSDGLFLTEAGYDVVLLE--------------------------------------------------------------------- 56 
                  57777777777777777777777777775..................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlvea 173
                                                                                           a
   EHU00135.1  57 -------------------------------------------------------------------------A 57 
                  .........................................................................3 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00055       1.1       1      35 [.      29      64 ..      29      92 .. 0.78
   2 !    4.9   0.0    0.0093        19      11      48 ..     167     207 ..     163     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00055
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlea 35
                ++i+GaG  G   +  L++ag+dv+l+   r  + a
  EHU00135.1 29 VCIIGAGFTGLSDGLFLTEAGYDVVLLEAARvGYGA 64
                69************************9877766655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT..C CS
        ApbA  11 sllaakLakagadvtlilrsr.rlealkknGlrltseg..g 48 
                 +++++ L k ga+ + ++    ++ea++++G r+++ +   
  EHU00135.1 167 RYVGGLLDKRGAHLHPLNLALgEAEAIRRHGGRIYEQSaaL 207
                 599**********9999999999************998432 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00011      0.22       2      31 ..      29      58 ..      28      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v ++G+G++gl  + +l+e g +V ++e++
  EHU00135.1 29 VCIIGAGFTGLSDGLFLTEAGYDVVLLEAA 58
                78***********************99976 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   9.9e-05       0.2       3      29 ..      29      55 ..      27      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.9e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigv 29
                    +++iG+G+ Gl  ++ l e+g +v+++
      EHU00135.1 29 VCIIGAGFTGLSDGLFLTEAGYDVVLL 55
                    9***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3100.92
//
Query:       EHU00136.1  [L=275]
Description: NAD-dependent epimerase/dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-11   43.5   0.0    1.6e-10   40.9   0.0    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00014   21.5   0.1     0.0013   18.4   0.1    2.1  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00017   21.5   0.0    0.00018   21.4   0.0    1.1  1  NAD_binding_10  NAD(P)H-binding
    0.00025   20.2   0.0     0.0005   19.3   0.0    1.5  1  RmlD_sub_bind   RmlD substrate binding domain
    0.00026   21.2   0.0     0.0004   20.6   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0018   18.5   0.0     0.0027   18.0   0.0    1.3  1  TrkA_N          TrkA-N domain
      0.003   16.6   0.0     0.0039   16.2   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.018   14.9   0.1      0.032   14.1   0.1    1.5  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.14   11.8   0.0        0.2   11.3   0.0    1.2  1  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   7.8e-14   1.6e-10       8     240 ..      10     213 ..       4     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7.8e-14
                 SHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHHHHHHHHHHHH CS
   Epimerase   8 GfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgtlnlleaarka 105
                 G +G  l+ al ++g++v+g +  +++ + ar+  ++  +l+lt +     +++ e+ +a + + a v + +as +       + +q ++n+++ a ++
  EHU00136.1  10 GWLGMPLAMALTARGWQVTGSKTTPDGVEAARRCGIDAFQLELTPEL----VCEAEDLEALFDVNAlVVTLPASRTAEGGD--AYVQAVQNVVDTALAR 102
                 999999******************99999998887777777777543....44455899***9977799999988887775..55************** PP

                 TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEET CS
   Epimerase 106 gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqevtllg 204
                 +v r++f sS++vYG +a + k+e++   pl+p +  +  K++++   + +++  g+++ +lrl  l+Gp    +++ r+++        gkq+   l 
  EHU00136.1 103 NVPRIIFTSSTSVYGGSAGI-KTEKS---PLQPETTAG--KTLVDLENW-LHDLPGTSVDVLRLAGLVGPK---RHPGRFLA--------GKQD---LP 180
                 *******************8.88888...**9999755..888886665.556679***************...77888877........7733...45 PP

                 TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEE CS
   Epimerase 205 dgtalRdflyveDvaeaillvlehvdagdkgeiyni 240
                 +g++   +++ +Dv+eai+l+l+ ++    g+++n+
  EHU00136.1 181 NGSHGVNLVHLDDVVEAIMLLLQTPKG---GRTFNL 213
                 7899999*****************665...567776 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.5e-07    0.0013       2     126 ..       3     117 ..       2     127 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.5e-07
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHH.HHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLe.elvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaa 95 
                     k++++GlG++G++ a++l ++g +v+g       v++ ++  i  ++ +L  elv +a     l++           dv  ++V  P++++ +  
      EHU00136.1   3 KVAIVGLGWLGMPLAMALTARGWQVTGSKTTPDGVEAARRCGIDAFQLELTpELVCEAE---DLEAL---------FDVNALVVTLPASRTAEGG 85 
                     89*************************99999999998888777777777623333333...33333.........3444455555555533332 PP

                     -THHHHHHHHHHHHHHHC..EEEEEE-S---TT CS
  UDPG_MGDP_dh_N  96 Dlkyvesaarsiaealkk..gkvvvvkSTvpvg 126
                     D  yv+++ + +  al +   +++ + ST + g
      EHU00136.1  86 D-AYVQAVQNVVDTALARnvPRIIFTSSTSVYG 117
                     2.4555555555555555456777777776655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   9.2e-08   0.00018       4     106 ..      10     120 ..       8     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.2e-08
                     SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT.....-CCHHHHHHTT-SEEEES-......--TCCHHHHHHHHHHHHHH CS
  NAD_binding_10   4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvt.....dvedlaealkgadaVvsal......ggggkdeegaknivdaake 87 
                     G+ G  l+  l ar g++vt    +p+ +++ + + g++++++++t     ++edl eal +++a v++l       gg+   ++++n+vd a +
      EHU00136.1  10 GWLGMPLAMALTAR-GWQVTGSKTTPDGVEAAR-RCGIDAFQLELTpelvcEAEDL-EALFDVNALVVTLpasrtaEGGDAYVQAVQNVVDTALA 101
                     88899999999999.5*************9765.7999999999984333245665.5666888888888544432222225566********** PP

                     CT--EEEEEEETTTTSGCG CS
  NAD_binding_10  88 agvkRfvlvsaigvgdevp 106
                      +v R+++ s+  v+  ++
      EHU00136.1 102 RNVPRIIFTSSTSVYGGSA 120
                     *************996333 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.5e-07    0.0005      10     160 ..      10     173 ..       1     194 [. 0.71

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.5e-07
                    SHHHHHHHHHCTTTSEEEEEE-TT..T--TTSHHHHHHHHHHH--SEEEE------HHHHH........HSHHHHHHHHTHHHHHHHHHHHHCT-E CS
  RmlD_sub_bind  10 GqlGseLakqlaeeglevlaltre..eldltdaeavaellkeakpdvvvnaAAytavDkaE........seeeaayavnaeavealAeaaaavgal 95 
                    G lG+ La +l+++g++v++ + +   ++ +++  ++++  e  p++v +a    a + +         s  ++   + ++av+++ + a a++++
     EHU00136.1  10 GWLGMPLAMALTARGWQVTGSKTTpdGVEAARRCGIDAFQLELTPELVCEAEDLEALFDVNalvvtlpaSRTAEGGDAYVQAVQNVVDTALARNVP 105
                    778888888888888888877444345666666667777777777777776555555444311111111344555567899*************97 PP

                    .EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH.H-SSEEEEEE-SEESS..SSS-HH CS
  RmlD_sub_bind  96 .LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla.agkkalivRtswvyge..kgknfv 160
                     +i+ S+  V+ G++    +e+++ +P ++ G+t ++ E++  +  g  + ++R + + g   +   f+
     EHU00136.1 106 rIIFTSSTSVYGGSAGI-KTEKSPLQPETTAGKTLVDLENWLHDlPGTSVDVLRLAGLVGPkrHPGRFL 173
                    699***********665.699**********************96677889*****9998633444555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     2e-07    0.0004       1      45 [.       3      47 ..       3     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2e-07
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegaka 45
                   k++++GlG +G+++a  l+++g++v++   t++ ve++   g++a
     EHU00136.1  3 KVAIVGLGWLGMPLAMALTARGWQVTGSKTTPDGVEAARRCGIDA 47
                   689********************************9998888443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0027       1      61 [.       4      64 ..       4     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGG CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagie 61
                ++i+GlG +G+ la  L+++g++v++  + ++ ve +r+ g+++++ + t e v e+ ++e
  EHU00136.1  4 VAIVGLGWLGMPLAMALTARGWQVTGSKTTPDGVEAARRCGIDAFQLELTPELVCEAEDLE 64
                68*****************9999**************************999888888776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     2e-06    0.0039      65     122 ..      61     118 ..       5     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2e-06
   3Beta_HSD  65 egvdvvihlaslvdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgp 122
                 e+ ++++ + +lv      ++ e  ++ v+  +nv+++++  +v+++++tSs +v g+
  EHU00136.1  61 EDLEALFDVNALVVTLPASRTAEGGDAYVQAVQNVVDTALARNVPRIIFTSSTSVYGG 118
                 55666666666666666666666778999**************************998 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.6e-05     0.032       1      40 [.       3      42 ..       3     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                kva++G G +G  +a+++ ++g +V+   ++++ +e+a++
  EHU00136.1  3 KVAIVGLGWLGMPLAMALTARGWQVTGSKTTPDGVEAARR 42
                79*****************************999999886 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.8e-05       0.2       1      87 [.       4      87 ..       4     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealee 87
                +ai+G+G +G  la  L++ g++vt    ++  +ea ++ G++  + +    l p+ + +ae+ + l ++  ++vt++a  t+e  ++
  EHU00136.1  4 VAIVGLGWLGMPLAMALTARGWQVTGSKTTPdGVEAARRCGIDAFQLE----LTPELVCEAEDLEALFDVNALVVTLPASRTAEGGDA 87
                69***************************************9988888....555555555555556778888888888887775555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2138.24
//
Query:       EHU00137.1  [L=299]
Description: ATP phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-48  162.2   0.0    1.2e-47  161.8   0.0    1.2  1  HisG      ATP phosphoribosyltransferase
    2.4e-23   82.0   0.0    5.1e-23   81.0   0.0    1.6  1  HisG_C    HisG, C-terminal domain
     0.0039   17.5   0.0       0.16   12.3   0.0    2.3  2  Toprim_3  Toprim domain


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0     2e-51   1.2e-47       1     160 []      54     219 ..      54     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 2e-51
                 -GGGHHHHHHTTSSSEEEEEHHHHHHC.......T...TEEEEEEESESEEEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHTT-EEEEE CS
        HisG   1 raadiptyVeegavdlGitGkDvveEs.......keeeeveelldLgfgkcklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeekglkveii 92 
                 r++dip +V++g+vdlGi+G++v+eE+       +e+ ++ +l +L+fg c+l++a+p +  ++  + l   ++ riaTsyp+l+k+y++++g+ ++ +
  EHU00137.1  54 RDDDIPGLVMDGVVDLGIIGENVLEEElltrraqGEDPRYFTLRRLDFGGCRLSLAMPVDDAYTGPQCL---NNARIATSYPHLLKQYLDKQGIAFKSC 149
                 789***********************6667777788999********************9999988877...4469*********************** PP

                 E-SS-CTHHHHTTS-SEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEEHHHHH.S.HHHHHHHHHHHHH CS
        HisG  93 klsGsvEaapalglaDaIvDlvetGeTLrangLkaietilessavLiankkslk.k.kekieellerlrg 160
                  l+GsvE+ap+ glaDaI+Dlv+tG+TL+angL+++e i++s+avLi++   +    +e+i+++++r++g
  EHU00137.1 150 LLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKAVLIQRDGDMPaAkQELIDKMMTRIQG 219
                 ***********************************************988887753477*********96 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   8.5e-27   5.1e-23       1      73 []     223     296 ..     223     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 8.5e-27
                 TTTEEEEEEEEEGGGHHHHHHH---SSS-EEEE-..SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S- CS
      HisG_C   1 ArkyvllmynvpkesleevlkilPGlrsPTvspla.degwvaVsavveekevaevideLkaaGAsdIlvlpiek 73 
                 Ar+++++m+++p e+leev+++lPG + PTv pla d   va ++v +e+ ++e++++Lka+GAs+Ilvlpiek
  EHU00137.1 223 ARESKYIMLHAPSERLEEVISLLPGAERPTVLPLAgDVSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEK 296
                 89*********************************9999*********************************97 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.7e-05      0.16      25      69 ..     175     219 ..     169     226 .. 0.91
   2 ?    2.6   0.0      0.03   1.8e+02      56      81 ..     270     295 ..     242     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.7e-05
    Toprim_3  25 AllsaanlkaiawpergkrvviaaDnDaandGreaaeklaerlea 69 
                 A l+a++l+++++  r+k v i +D+D  ++ +e ++k++ r+++
  EHU00137.1 175 ATLEANGLREVEVIYRSKAVLIQRDGDMPAAKQELIDKMMTRIQG 219
                 8899************************999**********9985 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
    Toprim_3  56 Greaaeklaerleaagieavllepae 81 
                 ++  +++++e+l+a g + +l+ p e
  EHU00137.1 270 SETLFWETMEKLKALGASSILVLPIE 295
                 67789**************9999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2233.50
//
Query:       EHU00138.1  [L=435]
Description: histidinol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.4e-164  545.6   0.6   8.3e-164  545.4   0.6    1.0  1  Histidinol_dh  Histidinol dehydrogenase
  ------ inclusion threshold ------
      0.076   13.1   0.0       0.19   11.8   0.0    1.6  1  AIRS_C         AIR synthase related protein, C-terminal domai


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  545.4   0.6  9.3e-168  8.3e-164       7     409 .]      29     428 ..      22     428 .. 0.97

  Alignments for each domain:
  == domain 1  score: 545.4 bits;  conditional E-value: 9.3e-168
                    --HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEEEEEEE CS
  Histidinol_dh   7 dseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvvlgqkv 102
                     s+++++ v+++l++v++eGd+al++++++FDkv+ l+++rv++e++++a ++l++elk+a+ +a++ni++fh+aq      + et+pgv+++q +
     EHU00138.1  29 ASDSISQIVRDVLARVKSEGDAALRDFSARFDKVE-LTDFRVTAEQMQAASDRLSDELKQAMAVAVANIETFHRAQILPAVDI-ETQPGVRCQQVT 122
                    456899**************************885.689**************************************754555.************ PP

                    EE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SSGG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---SHHH CS
  Histidinol_dh 103 rpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpqdgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGniyV 198
                    rp+++vGlY+PgG+a+++Stvlm+a pA++Ag+ ++v+++Pp    +++++l+aa+l+gv+e+++vGGaqAiaalA+Gte++pkv ki+GPGn++V
     EHU00138.1 123 RPMQSVGLYIPGGSAPLFSTVLMLATPARIAGCGRVVLCSPP---PIADEILYAAQLCGVEEVFQVGGAQAIAALAFGTETVPKVAKIFGPGNAWV 215
                    *****************************************9...59************************************************* PP

                    HHHHHHHCTT...BEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCCH-EEEE CS
  Histidinol_dh 199 aaAKrlvsge...vgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlvttseelaeaveeevekqleelprkeiaekslekqsaiil 291
                    ++AKr+vs++    +iDm+aGPsEvlviaD+ a+p+fvA+DLlsqaEH++d+q++l+t+s+ lae+v+++ve+ql++lpr+++a+k+le+ s++i+
     EHU00138.1 216 TEAKRQVSQSldgAAIDMPAGPSEVLVIADDGATPAFVASDLLSQAEHGPDSQVILLTPSQGLAERVADAVEQQLAQLPRAATARKALES-SRLIV 310
                    *******77656799***************************************************************************.***** PP

                    -SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHHHHHHHH CS
  Histidinol_dh 292 vedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskealkelae 387
                    ++dl+++++++n+y+pEHl+lq++ p++l+e+i++aG++flG++spes+gDYa+GtnhvLPT+g++ + s+l+++dF+k+++vqel+++++ +la 
     EHU00138.1 311 ARDLQQCVAISNRYGPEHLILQTRTPRDLVEQITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELTPQGFMDLAA 406
                    ************************************************************************************************ PP

                    HHHHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 388 avetlAeaEgLeaHaeavkvRl 409
                    ++etlA+aE+L+aH++av++R+
     EHU00138.1 407 TIETLAAAEQLDAHKNAVTLRV 428
                    *******************995 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05      0.19      85     143 ..     128     186 ..     124     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                 EEEEEECGTHHHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEE CS
      AIRS_C  85 vgaeidldkvpifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIG 143
                 vg+ i     p+f+ +   + +++++ +Gr++++ pp+ ad++l +++ +g+ e+ ++G
  EHU00138.1 128 VGLYIPGGSAPLFSTVLMLATPARIAGCGRVVLCSPPPIADEILYAAQLCGVEEVFQVG 186
                 7777888888999999989999******************************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3422.95
//
Query:       EHU00139.1  [L=356]
Description: histidinol-phosphate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-59  199.7   0.0      9e-59  199.5   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
     0.0024   16.9   0.0      0.009   15.0   0.0    1.7  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.058   12.2   0.0       0.08   11.7   0.0    1.1  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
      0.065   11.7   0.0      0.096   11.2   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.095   12.6   0.0       0.19   11.6   0.0    1.4  1  NT5C             5' nucleotidase, deoxy (Pyrimidine), cytosol


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.0   2.5e-62     9e-59      31     363 .]      45     350 ..      30     350 .. 0.95

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 2.5e-62
                    HHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETT CS
  Aminotran_1_2  31 alaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplysee 126
                     l+++tln+y+ ++  +++ ++ a ++g      l +e +v+v+ Ga+++ie+l+++++ + +d+il + pty++y+  ++  g+e +++p +  e
     EHU00139.1  45 ELSQQTLNRYPECQ-PKQVITRYAAYAG------LSPE-QVLVSRGADEGIELLMRAFCEPGKDAILFCPPTYGMYSVSAETIGIEYRTVPAR--E 130
                    5789**********.*************......****.*******************99999****************************66..* PP

                    TTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSS CS
  Aminotran_1_2 127 dfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgslsK 221
                    +++l+l a+ e+l+        +kv++ +sp+NPtG +++ + +++ll+++   ++l++ DeaY +f+ +     at   ++ e+p+l+i+++lsK
     EHU00139.1 131 GWQLNLPAIAEQLA-------GVKVVYMCSPNNPTGNLIDQDAIRQLLAMTAG-KALVVADEAYIEFCPQ-----ATlAGWLREYPHLVILRTLSK 213
                    **************.......679***********************999986.****************.....3339***************** PP

                    TTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHH CS
  Aminotran_1_2 222 afGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsae 315
                    af+laG+R+G++l+n+ v++ l k+ +p+   ++++ ++ +alsd+      + + +++l+++r  l+++L ++    +v++s+++++l++ ++  
     EHU00139.1 214 AFALAGLRCGFTLANKPVIDLLMKVIAPYPLATPVADVAGQALSDEGIA--LMRQHVDELNANRSWLFEQLPQIrvVEQVFPSETNYILVRFTDSP 307
                    *********************************************9965..9*******************99999999***********999998 PP

                    CHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 316 takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                       +++k L+++  ++  +++ + + g+lRi+v  +t+ e+e+l+ al
     EHU00139.1 308 ---KVFKTLWDQGIILRDQNKNPSLAGCLRISV--GTRTECERLIAAL 350
                    ...99999****8888999999999********..*********9886 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.5e-06     0.009      61     177 ..      74     185 ..      60     187 .. 0.84
   2 ?   -1.0   0.0      0.18   6.4e+02     268     337 ..     256     322 ..     250     346 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.5e-06
                  GGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--H CS
  Aminotran_5  61 eeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpv 158
                   e++++ +G+ e+i+l ++++    +pg+ +++      +     +  a++ g++ + +p+ e+++l+l +++++l   +k+v+++  +n tG++ + 
   EHU00139.1  74 PEQVLVSRGADEGIELLMRAF---CEPGKDAILFCPPTYGMY--SVS-AETIGIEYRTVPAREGWQLNLPAIAEQL-AGVKVVYMCSPNNPTGNLIDQ 164
                  578999999999999999999...888888887766666665..333.45789***********************.78******************* PP

                  HHHHHHHHH.T.T-EEEEE-T CS
  Aminotran_5 159 eeigklakk.k.galvlvDaa 177
                  ++i +l+   + +alv++D a
   EHU00139.1 165 DAIRQLLAMtAgKALVVADEA 185
                  *****98874469****9976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
                  HHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEE CS
  Aminotran_5 268 leeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrs 337
                  l++ g++ +++h +el +      ++lp++r+++ ++ + +++ + + f   ++ +v + L ++gI +r 
   EHU00139.1 256 LSDEGIALMRQHVDELNANRSWLFEQLPQIRVVE-QVFPSETNYILVRF--TDSPKVFKTLWDQGIILRD 322
                  6788999999999999999999999999999966.45555555555555..4677777777777888775 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05      0.08     121     216 ..      96     186 ..      54     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
                     GG.--EEEEEES--HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-T CS
  Aminotran_MocR 121 keekvkllvtvpGydrhfllleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifadda 215
                     +  k  +l   p y  + +  e+ Gie  tv+ ++ G +++ +  ++ + a vk +++     nptG+ i ++ +r+l a+ a      + ad+a
      EHU00139.1  96 EPGKDAILFCPPTYGMYSVSAETIGIEYRTVPARE-GWQLN-LPAIAEQLAGVKVVYMC-SPNNPTGNLIDQDAIRQLLAMTAG--KALVVADEA 185
                     55566678888999999999************875.77765.56677778889988765.558*****************9754..456788888 PP

                     T CS
  Aminotran_MocR 216 y 216
                     y
      EHU00139.1 186 Y 186
                     8 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05     0.096     103     176 ..     107     186 ..      75     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.7e-05
                      HHHHHHHHTHHHTTCEEEEESTTSHHHHH.HHCCT...TEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGTT CS
  Cys_Met_Meta_PP 103 gtqrllkkvlkklgievkfvdtsdleele.kaike...ntklvylEtptnpllkvvDiekiaklakkag..vlvvvDntf 176
                      +t+ + +  ++ +gie++ v   +  +l+  ai e    +k+vy+ +p np+ +++D  +i +l       +lvv D ++
       EHU00139.1 107 PTYGMYSVSAETIGIEYRTVPAREGWQLNlPAIAEqlaGVKVVYMCSPNNPTGNLIDQDAIRQLLAMTAgkALVVADEAY 186
                      5777788888889999999988776666523455435569*********************9975544337999999765 PP

>> NT5C  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.19      92     165 ..     264     336 ..     256     353 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
        NT5C  92 llqfydavkekveWldehlplipyrnlvlvkekdlvrgDvlidDapknleklrgrs.ilfdsptnrhiedelRaa 165
                 ++q+ d ++ +  Wl e lp i   + v+  e + +   v + D+pk  + l  ++ il d+ +n  + ++lR+ 
  EHU00139.1 264 MRQHVDELNANRSWLFEQLPQIRVVEQVFPSETNYIL--VRFTDSPKVFKTLWDQGiILRDQNKNPSLAGCLRIS 336
                 689999**************************99986..7899*********999956678999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2609.02
//
Query:       EHU00140.1  [L=355]
Description: histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-64  214.0   0.5    1.5e-63  213.4   0.5    1.3  1  IGPD            Imidazoleglycerol-phosphate dehydratase
    7.1e-08   32.4   0.0    1.4e-07   31.4   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
    7.4e-07   29.4   0.0    0.00012   22.2   0.0    2.4  2  HAD_2           Haloacid dehalogenase-like hydrolase
    5.5e-06   26.2   0.0    1.5e-05   24.7   0.0    1.7  1  PNK3P           Polynucleotide kinase 3 phosphatase
    0.00051   20.4   0.0      0.011   16.1   0.0    2.5  3  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0031   17.9   0.0      0.012   16.0   0.0    2.0  2  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.5   4.9e-67   1.5e-63       1     144 []     196     337 ..     196     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: 213.4 bits;  conditional E-value: 4.9e-67
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.- CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekigel 99 
                 Tg+gf+dhmLdq+a hggf+++++v+gdl +ddHhtved+g+alG+al +algdkrgi Rfg++ lpmDe+la++ald+sgrp+++++ae++ +++g+l
  EHU00140.1 196 TGVGFFDHMLDQIAVHGGFRMNIDVNGDLYIDDHHTVEDTGLALGEALLKALGDKRGIGRFGFV-LPMDECLARCALDISGRPHIEFKAEFSYQRVGDL 293
                 9**************************************************************9.********************************** PP

                 -HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHHHHHHHHHH CS
        IGPD 100 dtelveeffeslaeaagitlhvkvlrgenahhivealfKafaraL 144
                 +te+ve+ff+sl+ a+  tlh+k++ g+n+hh ve+lfKaf+r+L
  EHU00140.1 294 STEMVEHFFRSLSYAMMSTLHLKTK-GKNDHHRVESLFKAFGRTL 337
                 ***********************98.*****************87 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   4.8e-11   1.4e-07       2      46 ..     103     146 ..     102     164 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 4.8e-11
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEE CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksv 46 
                     ++KP   m+++ l++  +d +++++iGDr  tDi+ A n+G++++
      EHU00140.1 103 CRKPKTQMVEAWLAEGALDTANSYVIGDR-QTDIQLAENMGIQGI 146
                     89***************************.************987 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0094        28      77     105 ..      29      57 ..       9      66 .. 0.85
   2 !   22.2   0.0   4.1e-08   0.00012     129     176 ..      99     146 ..      74     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0094
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsks 105
                 ++ + ++v  +L  L++agy+l  +T+++
  EHU00140.1  29 KLAFEPDVVPALLALQDAGYQLVMITNQD 57 
                 6778899*******************986 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 4.1e-08
       HAD_2 129 edvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 +++  +KP+++++e++l +  l+ ++  ++GD +tDi+ a ++gi+ i
  EHU00140.1  99 DHCACRKPKTQMVEAWLAEGALDTANSYVIGDRQTDIQLAENMGIQGI 146
                 455567***************************************876 PP

>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.1e-09   1.5e-05       5     126 ..       8     130 ..       4     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.1e-09
       PNK3P   5 FDlDstliktksgkefakdaddwkllsesvlekLkklkeegykivifsNqggvvek.ktkkslekfkekieallkeldvp.llvyaatkk..d..kyRK 97 
                  D D+t+i +   + f+ d+ d   +++ v+  L +l++ gy++v+++Nq g+ +    + +++   + + ++l++ ++    v++ ++k  d  + RK
  EHU00140.1   8 IDRDGTIISEPP-QDFQVDRMDKLAFEPDVVPALLALQDAGYQLVMITNQDGLGTDsFPQADFDGPHTLMMQILSSQGIRfSDVLICPHKpeDhcACRK 105
                 588999998887.5567778888899999*************************9543444444445555555555444443355554432235599** PP

       PNK3P  98 PetGmweelkkdleekleidkeksfyvGD 126
                 P+t m+e+  ++       d+ +s+ +GD
  EHU00140.1 106 PKTQMVEAWLAEGAL----DTANSYVIGD 130
                 ******998876555....6777777777 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11   3.3e+02       2      14 ..       4      16 ..       3      26 .. 0.85
   2 !   16.1   0.0   3.6e-06     0.011     119     210 .]      32     142 ..      20     142 .. 0.85
   3 ?   -2.5   0.0       1.7     5e+03     134     179 ..     252     298 ..     161     308 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
                SEEEEESBTTTBC CS
                xxxxxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLtt 14
                kt+++D dGT++ 
  EHU00140.1  4 KTLFIDRDGTIIS 16
                89*********95 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.6e-06
                 BHTTHHHHHHHHHHTTEEEEEEESSEH..............HHHH.HHHHHTTGGGESEEEEHHCES....STTTSHHHHHHHHHHHTSTGGGEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx.xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 119 vkpeaaeavasLkaagievvlltgdnp..............etae.raanqlGddyfdaviasdiet....vakpspegkvaaireLqgkpeevamVGD 198
                   p+++ a+ +L++ag+++v++t+++               +t +  +++  G ++ d+ i+    +    + kp+ ++++a + e   + ++  ++GD
  EHU00140.1  32 FEPDVVPALLALQDAGYQLVMITNQDGlgtdsfpqadfdgpHTLMmQILSSQGIRFSDVLICPHKPEdhcaCRKPKTQMVEAWLAEGALDTANSYVIGD 130
                 56999******************88877777788888877766666888888855559999988888999***************************** PP

                 SHHHHHHHHHTT CS
                 xxxxxxxxxxxx RF
   Hydrolase 199 gvnDaaalaaAg 210
                 + +D++ ++++g
  EHU00140.1 131 RQTDIQLAENMG 142
                 ******999876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
                 TE.EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHH CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 134 gi.evvlltgdnpetaeraanqlGddyfdaviasdietvakpspegk 179
                 gi + + +   ++  a+ a++  G+ +++++ + +   v+  s e++
  EHU00140.1 252 GIgRFGFVLPMDECLARCALDISGRPHIEFKAEFSYQRVGDLSTEMV 298
                 44334444434444444444445544445555555555555555555 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.41   1.2e+03      85     108 ..      31      54 ..       6      55 .. 0.48
   2 !   16.0   0.0   3.9e-06     0.012      86     188 .]      32     139 ..      18     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.41
         HAD  85 lldpgalellaahraaGdrvvvvS 108
                 ++ p+++ +l a ++aG+++v+++
  EHU00140.1  31 AFEPDVVPALLALQDAGYQLVMIT 54 
                 244555555555555666555555 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.9e-06
         HAD  86 ldpgalellaahraaGdrvvvvSgglrplvepll.aelg.....adevlat.elevdd..rltgelglegkpvrgegkvaalrewlaaegegidleevv 175
                 + p+++ +l a ++aG+++v++++     +  +  a ++       ++l++  +++ d   +    ++e+++  ++ k + +++wla+   +   ++++
  EHU00140.1  32 FEPDVVPALLALQDAGYQLVMITNQDGLGTDSFPqADFDgphtlMMQILSSqGIRFSDvlICPH--KPEDHCACRKPKTQMVEAWLAEGALDT--ANSY 126
                 6666666666677788888888887777777777666666555555556665666666633333..5899999999********999888655..77** PP

         HAD 176 ayGDspsDlpllr 188
                 ++GD  +D++l++
  EHU00140.1 127 VIGDRQTDIQLAE 139
                 ***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2703.00
//
Query:       EHU00141.1  [L=196]
Description: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-18   67.8   0.0    1.2e-18   67.6   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    2.6e-07   30.7   0.0     0.0003   20.7   0.0    2.0  2  SNO            SNO glutamine amidotransferase family
    1.2e-05   25.2   0.4       0.01   15.6   0.0    2.2  2  Peptidase_C26  Peptidase C26
    5.2e-05   22.9   0.0    7.4e-05   22.4   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   2.6e-22   1.2e-18       3     187 ..       6     194 ..       4     196 .] 0.76

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2.6e-22
                 EESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT....TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT....... CS
      GATase   3 iDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg....vegkieaikearenkiPiLGICLGmQllaiefgr....... 90 
                 +D +  +  +++ a+ +lg++ ev ++             +d++++ +G+g+ +      ++ e+i+ +     P+LGICLGmQll+  + +       
  EHU00141.1   6 LDTGCANLSSVKWAVERLGYTPEVSRHPD--VVL-----RADKLFL-PGVGTAQaamnQLQERELIELVKACTQPVLGICLGMQLLGSHSEEnggvptl 96 
                 56666666667777777777777777553..333.....4677666.678888866664444555555556778*************999997778777 PP

                 ..........EEEEEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTH CS
      GATase  91 ..........kvvkekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpeg 179
                           ++      +h+g+++   + +++l++g ++  + ++ H++++        +   +a++  ++ + ++++k+n f+gvQFHPE + + + 
  EHU00141.1  97 giidqpvslmDTQGLP-LPHMGWNQITAQAGNHLFRGIDEGSYFYFVHSFAMPV------NASTIAQCHYGQAFTAAVQKDN-FFGVQFHPERSGKVG- 186
                 7777655444444555.9***********9*********************775......5567788989999999999999.*********999887. PP

                 HHHHHHHH CS
      GATase 180 pellfnfl 187
                 ++ll+nfl
  EHU00141.1 187 AQLLKNFL 194
                 99999985 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.6e-08    0.0003      14      98 ..      19     101 ..      11     106 .. 0.80
   2 !    8.2   0.0   0.00045         2     146     181 ..     154     192 ..     141     196 .] 0.69

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.6e-08
                 HHHHTTSEEEEE-SGGGGCC-SEEEE-SS-H..HHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB.SS-SS--CCE CS
         SNO  14 aikkclaenktvkrkedlaevdaliiPGGes..tamskliertglyedllefvknsekvvlGtCaGlillskelene.lvktlellkv 98 
                 a+++ ++   + ++++ + + d l +PG  +  +am++l e      +l e vk   ++vlG C G+ ll  + e++  v+tl++++ 
  EHU00141.1  19 AVERLGYTPEVSRHPDVVLRADKLFLPGVGTaqAAMNQLQE-----RELIELVKACTQPVLGICLGMQLLGSHSEENgGVPTLGIIDQ 101
                 67888888888899999999*******85320134444444.....469*********************988887779*****9985 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00045
                 EEEECTTEEEEEE.ET.TEEEESS-GGGSTT.HCHHHHH CS
         SNO 146 vlyeldgeivvak.qk.kilatsfhPelaed.dirvhdy 181
                 +++ + g+  +a+ qk +++++ fhPe + + + ++ + 
  EHU00141.1 154 IAQCHYGQAFTAAvQKdNFFGVQFHPERSGKvGAQLLKN 192
                 55556686666666988**********875424555555 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.3e-06      0.01      94     118 ..      59      83 ..      35     111 .. 0.89
   2 !    8.3   0.0   0.00038       1.7     198     216 .]     162     180 ..     116     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
  Peptidase_C26  94 elaLiraalergvPilgiCrGlqll 118
                    e  Li+ + +   P+lgiC+G+qll
     EHU00141.1  59 ERELIELVKACTQPVLGICLGMQLL 83 
                    6678888889999***********9 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00038
  Peptidase_C26 198 aieseeakafvlgvQwHPE 216
                    a+++  +k  ++gvQ+HPE
     EHU00141.1 162 AFTAAVQKDNFFGVQFHPE 180
                    56666677789*******9 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.7e-08   7.4e-05      33     112 ..      33     100 ..      16     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.7e-08
    GATase_3  33 kdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLd 112
                 +d  l + ad ++lpG  +  ++++ l+e++l e +k+      pvlgiC G+q+LG++ e+  gv       + lg++d
  EHU00141.1  33 PDVVL-R-ADKLFLPGVGTAQAAMNQLQERELIELVKACT---QPVLGICLGMQLLGSHSEENGGV-------PTLGIID 100
                 44444.4.899******99999999999988888888866...5**************98876654.......6666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1678.17
//
Query:       EHU00142.1  [L=245]
Description: N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-75  253.3   0.2      2e-75  253.2   0.2    1.0  1  His_biosynth  Histidine biosynthesis protein
    1.2e-05   24.6   0.0      0.091   11.8   0.0    2.1  2  Dus           Dihydrouridine synthase (Dus)
      2e-05   23.6   0.3    0.00023   20.1   0.0    2.1  2  Trp_syntA     Tryptophan synthase alpha chain
    3.4e-05   23.1   0.5    0.00016   20.9   0.0    2.2  3  NanE          Putative N-acetylmannosamine-6-phosphate epimer
    5.3e-05   22.8   2.2     0.0031   16.9   0.2    2.1  2  NMO           Nitronate monooxygenase
    5.8e-05   22.4   0.2       0.22   10.6   0.0    2.2  2  IGPS          Indole-3-glycerol phosphate synthase
    0.00022   20.8   0.2     0.0017   17.9   0.0    2.0  2  PcrB          PcrB family
  ------ inclusion threshold ------
      0.013   14.6   0.4      0.077   12.0   0.1    2.0  2  IMPDH         IMP dehydrogenase / GMP reductase domain
      0.021   13.9   3.6        2.2    7.2   0.3    2.5  3  FMN_dh        FMN-dependent dehydrogenase
      0.039   13.2   0.0      0.077   12.2   0.0    1.4  1  DHO_dh        Dihydroorotate dehydrogenase
      0.043   13.2   0.4          3    7.1   0.1    2.2  2  TMP-TENI      Thiamine monophosphate synthase
       0.13   11.7   0.3       0.27   10.6   0.1    1.6  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.2   0.2   1.4e-78     2e-75       1     229 []       1     234 [.       1     234 [. 0.98

  Alignments for each domain:
  == domain 1  score: 253.2 bits;  conditional E-value: 1.4e-78
                   EEEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                   +iipalDl dG+vVrl++Gd+ ++ +y  dp+  +++y+++ga+ lh+vDl++ak+  +++++l++ +++ v++ vqvGGGIrs edv++ll+aga+
    EHU00142.1   1 MIIPALDLIDGNVVRLHQGDYTRQRDYGSDPLPRLQDYARQGATVLHLVDLTGAKDPAKRQITLLKSLLNGVDAVVQVGGGIRSREDVKALLDAGAS 97 
                   69*********************************************************************************************** PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE...C.EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr...g.ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeav 190
                   +v++g+ avk+pe +k ++++fg ++iv+a+D+r    +  +vai+gw+e  g++++e++++++ +g++++l+tdi+rdGtlsG +++l+ke+ +++
    EHU00142.1  98 RVVVGSTAVKQPEEVKAWFTEFGPDAIVLALDVRIdatNrKEVAISGWQEAAGVTLEEVIEQFQPVGLKHVLCTDISRDGTLSGSNVDLYKEVTARF 194
                   **********************************9655278****************************************************9999 PP

                   .SSEEEEESS--SHHHHHHHHHTTCSEEEESHHHHTTSS- CS
  His_biosynth 191 .kipviasGGvgsledlkelksegvdavivgsalyegelt 229
                    +i+++ sGG+g+l+d+++l+ +gv++vivg+al+eg++t
    EHU00142.1 195 pQITFQSSGGIGELSDVAALRGSGVQGVIVGRALLEGKFT 234
                   9************************************986 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   6.1e-05     0.091     180     224 ..      70     113 ..      56     138 .. 0.82
   2 !   10.8   0.0   0.00013      0.19     176     218 ..     188     230 ..     178     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
                 HH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 180 qavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                 + v  +v + G+I+++ed++a l+  Ga  v++g  a ++P  ++
  EHU00142.1  70 NGVDAVVQVGGGIRSREDVKALLDA-GASRVVVGSTAVKQPEEVK 113
                 3444789999**************9.***************8775 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
                 HHHHHH-S.S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCC CS
         Dus 176 kevkqavs.ipviaNGdIkdaedaqaileetGadgvmigrgalg 218
                 kev  +++ i++   G+I +++d+ a l+ +G++gv++gr+ l+
  EHU00142.1 188 KEVTARFPqITFQSSGGIGELSDVAA-LRGSGVQGVIVGRALLE 230
                 789999999**************965.6777*********9986 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-07   0.00023     175     235 ..      51     111 ..      33     119 .. 0.84
   2 ?    1.3   0.1     0.083   1.2e+02     206     230 ..     204     229 ..     185     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-07
                 -SSTTSSB-TTHHHHHHHHHHCTSS-EEEESSS-SHHHHHHHH.TT-SEEEE-HHHHHHHHC CS
   Trp_syntA 175 vTgaenavaaevdelverlkkltavPvavGFGistkeqvkqva.kvadGvivGSalvkkiee 235
                  Tga++ +++++  l++ l +  ++ v vG Gi+++e+vk++  ++a+ v+vGS  vk+ ee
  EHU00142.1  51 LTGAKDPAKRQIT-LLKSLLNGVDAVVQVGGGIRSREDVKALLdAGASRVVVGSTAVKQPEE 111
                 6888888888875.6666666667889****************9*************98775 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.083
                 SS-SHHHHHHHH.TT-SEEEE-HHHH CS
   Trp_syntA 206 Gistkeqvkqva.kvadGvivGSalv 230
                 Gi + ++v+++  ++ +GvivG al+
  EHU00142.1 204 GIGELSDVAALRgSGVQGVIVGRALL 229
                 899999999999999*******9986 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   0.00016     123     188 ..      51     118 ..      42     120 .. 0.86
   2 ?   -1.8   0.0      0.99   1.5e+03      68     100 ..     140     174 ..     130     183 .. 0.69
   3 ?   -1.6   0.1      0.84   1.3e+03     164     177 ..     216     229 ..     203     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
                 SSTTS-.SS--HHHHHHHHHT.T--EEEES---SHHHHHHHHTT--SEEEE-H.HHH-HHHHHHHHHH CS
        NanE 123 ytkeeekaepDfalvkalsea.glkviaeGrintPekakkaieiGvdavvvGs.aitrleeiakkfve 188
                  t+ + +a+  ++l+k+l++  +  v + G i + e  k  ++ G+  vvvGs a+ ++ee+  +f+e
  EHU00142.1  51 LTGAKDPAKRQITLLKSLLNGvDAVVQVGGGIRSREDVKALLDAGASRVVVGStAVKQPEEVKAWFTE 118
                 5778889999*******9986145577899**********************868999********86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.99
                 EEEE--SS--T--HHHHHHHHHHH-..-EEEEE-S CS
        NanE  68 ialDatdrerpvtieelikkikeky..qllmaDis 100
                 +a+ + +    vt+ee+i++ +  +   +l +Dis
  EHU00142.1 140 VAISGWQEAAGVTLEEVIEQFQPVGlkHVLCTDIS 174
                 44444444555888888888888887777888887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.84
                 TT--SEEEE-HHHH CS
        NanE 164 eiGvdavvvGsait 177
                  +Gv+ v+vG a+ 
  EHU00142.1 216 GSGVQGVIVGRALL 229
                 57999999999985 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   2.1e-06    0.0031     179     224 ..      59     104 ..      50     114 .. 0.86
   2 !    5.7   0.1    0.0054         8     199     227 ..     202     230 ..     184     240 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
         NMO 179 kglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtr 224
                 k +++L+++ l+ vd  v   GGi  r++v+a L +GAs v +g+ 
  EHU00142.1  59 KRQITLLKSLLNGVDAVVQVGGGIRSREDVKALLDAGASRVVVGST 104
                 67889999999999999999***********************975 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0054
         NMO 199 aGGiidrrgvaaaLalGAsgvqigtrfLl 227
                  GGi +  +vaa    G +gv +g ++L 
  EHU00142.1 202 SGGIGELSDVAALRGSGVQGVIVGRALLE 230
                 7************************9995 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0003      0.44     210     247 ..      74     111 ..      58     118 .. 0.78
   2 !   10.6   0.0   0.00015      0.22     207     244 ..     195     231 ..     179     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
                 SEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTH CS
        IGPS 210 vllvaeSGiktredveklkeegvnafLvGeslmrqedv 247
                 +++    Gi++redv++l ++g++ + vG++ ++q++ 
  EHU00142.1  74 AVVQVGGGIRSREDVKALLDAGASRVVVGSTAVKQPEE 111
                 45555679**********************99999875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
                 -TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC- CS
        IGPS 207 pkdvllvaeSGiktredveklkeegvnafLvGeslmrq 244
                 p +++  +  Gi +  dv +l+ +gv++++vG +l++ 
  EHU00142.1 195 P-QITFQSSGGIGELSDVAALRGSGVQGVIVGRALLEG 231
                 3.566667889************************875 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0017     162     216 ..      52     110 ..      42     119 .. 0.72
   2 ?    0.6   0.0      0.21   3.2e+02     166     215 ..     182     232 ..     174     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
                 TTSSS-HHHHHHHHH.HHS..SSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHHHHH CS
        PcrB 162 sGaledveevialkk.kle..karlivGGGirsaEkAkevvea.ADvivvGnvveekde 216
                  Ga+++ +  i l k  l+  +a + vGGGirs+E+ k  + a A  +vvG    +++e
  EHU00142.1  52 TGAKDPAKRQITLLKsLLNgvDAVVQVGGGIRSREDVKALLDAgASRVVVGSTAVKQPE 110
                 677777744444444044422567889************************87666664 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.21
                 S-HHHHHHHHHHHSSSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHHHH CS
        PcrB 166 edveevialkkklekarlivGGGirsaEkAkevvea.ADvivvGnvveekd 215
                  +v++ +++ ++  ++++   GGi +  + +   +     ++vG ++ e +
  EHU00142.1 182 SNVDLYKEVTARFPQITFQSSGGIGELSDVAALRGSgVQGVIVGRALLEGK 232
                 47889999999*************998887777777788899998876654 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.1e-05     0.077     112     173 ..      38     102 ..      26     107 .. 0.66
   2 ?    0.6   0.0      0.15   2.3e+02     131     173 ..     182     225 ..     146     236 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.1e-05
                 HHHTT-SEEE.EE-..STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 112 lveagvdvlv.vds..ahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvG 173
                  +++g+ vl  vd   a+   +++++ +k++ + v+ v  ++G + ++e +kaL++aga  v vG
  EHU00142.1  38 YARQGATVLHlVDLtgAKDPAKRQITLLKSLLNGVDAVVQVGGGIRSREDVKALLDAGASRVVVG 102
                 55566666541333113344556666666666666667778999999999999999999999888 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHTTTSEEE.EEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 131 kvleavkeikkkveevevi.aGnvataegakaLieagadavkvG 173
                   ++  ke+ +++++++   +G + + + ++aL   g+++v vG
  EHU00142.1 182 SNVDLYKEVTARFPQITFQsSGGIGELSDVAALRGSGVQGVIVG 225
                 45566666666666644433666777777777777777666666 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0017       2.5     268     302 ..      72     104 ..      28     109 .. 0.81
   2 ?   -2.1   0.0         1   1.5e+03     136     171 ..     120     156 ..     113     169 .. 0.65
   3 ?    7.2   0.3    0.0015       2.2     260     306 ..     186     231 ..     174     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0017
                 H..SS-EEEESS--SHHHHHHHHHTT-SEEEESHH CS
      FMN_dh 268 vggrievlvDgGirrGsDvlkAlalGAdavllGRp 302
                 v  ++ v v gGir+ +Dv   l  GA+ v++G  
  EHU00142.1  72 V--DAVVQVGGGIRSREDVKALLDAGASRVVVGST 104
                 4..36788999999999999999999999999965 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                 TESEEEEESSTSS---BHHHHHC.T--BSTT-T.G.T CS
      FMN_dh 136 gykalvltvDtpvlgkRerdlrn.gfslppklklrnl 171
                 g +a+vl +D+ ++   ++++   g +   +++l+++
  EHU00142.1 120 GPDAIVLALDVRIDATNRKEVAIsGWQEAAGVTLEEV 156
                 6678899999988875555544425565555555544 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0015
                 CHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHH CS
      FMN_dh 260 vLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyg 306
                    e+ ++ + +i+   +gGi + sDv+     G ++v++GR++l g
  EHU00142.1 186 LYKEVTARFP-QITFQSSGGIGELSDVAALRGSGVQGVIVGRALLEG 231
                 5556666665.7888889*************************9765 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.1e-05     0.077     246     279 ..      74     108 ..      52     115 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
                 -EEEE.SS--SHHHHHHHHHHTECEEEESHHHHHH CS
      DHO_dh 246 piIgv.GGiesgeDalekieaGAslvqvytalvfe 279
                  ++ v GGi s eD+   + aGAs v v++  v++
  EHU00142.1  74 AVVQVgGGIRSREDVKALLDAGASRVVVGSTAVKQ 108
                 34444179*********************998765 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.002         3     132     179 ..      55     103 ..      44     105 .. 0.87
   2 ?    4.4   0.0     0.014        20     137     181 .]     182     228 ..     139     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
    TMP-TENI 132 kdaeplgleglkelaealeiPvvaiGGit.lenvaevleagadgvavvs 179
                 kd++ + +++lk l + +   v + GGi+  e+v+++l+aga++v v s
  EHU00142.1  55 KDPAKRQITLLKSLLNGVDAVVQVGGGIRsREDVKALLDAGASRVVVGS 103
                 4667888999999******99*******73589************9976 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
    TMP-TENI 137 lgleglkelaeale.iPvvaiGGit.lenvaevleagadgvavvsai 181
                  +++++ke+ +++  i +   GGi  l++va+++ +g++gv v +a+
  EHU00142.1 182 SNVDLYKEVTARFPqITFQSSGGIGeLSDVAALRGSGVQGVIVGRAL 228
                 56777788888887788889999962699*************98885 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00018      0.27     132     170 ..      66     104 ..      57     106 .. 0.82
   2 ?   -3.1   0.0       2.9   4.3e+03     139     167 ..     196     224 ..     184     228 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                   CTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE--H CS
  G3P_antiterm 132 keikkelkipiiaGGLietkedveealkaGaiavstsnk 170
                   k++ + ++  +  GG i+++edv+++l+aGa+ v ++++
    EHU00142.1  66 KSLLNGVDAVVQVGGGIRSREDVKALLDAGASRVVVGST 104
                   5555667778889*******************9988766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                   ..EEEEESS--SHHHHHHHCTT.SSEEEE CS
  G3P_antiterm 139 kipiiaGGLietkedveealkaGaiavst 167
                   +i++ ++G i + +dv ++  +G+++v +
    EHU00142.1 196 QITFQSSGGIGELSDVAALRGSGVQGVIV 224
                   56666777788888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2058.15
//
Query:       EHU00143.1  [L=258]
Description: imidazole glycerol phosphate synthase, catalytic subunit with HisH [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-77  257.5   0.6    1.1e-76  257.4   0.6    1.0  1  His_biosynth  Histidine biosynthesis protein
    4.3e-07   29.3   0.2    0.00022   20.4   0.0    2.1  2  Dus           Dihydrouridine synthase (Dus)
    1.1e-06   28.2   0.5    0.00016   21.1   0.1    2.1  2  ThiG          Thiazole biosynthesis protein ThiG
    1.3e-05   24.8   0.2      0.021   14.2   0.0    2.1  2  NMO           Nitronate monooxygenase
    0.00022   20.6   0.0     0.0096   15.3   0.0    2.3  2  TMP-TENI      Thiamine monophosphate synthase
    0.00088   18.4   0.1       0.29   10.1   0.0    2.1  2  FMN_dh        FMN-dependent dehydrogenase
  ------ inclusion threshold ------
       0.02   14.2   0.0       0.28   10.4   0.0    2.1  2  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
      0.026   13.9   0.0       0.25   10.7   0.0    2.1  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
      0.042   13.0   0.0       0.11   11.7   0.0    1.8  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
       0.11   12.0   0.0       0.43   10.0   0.0    1.9  2  PcrB          PcrB family
       0.12   11.4   0.2       0.55    9.2   0.0    1.9  2  IMPDH         IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.4   0.6   6.5e-80   1.1e-76       1     228 [.       5     239 ..       5     240 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.4 bits;  conditional E-value: 6.5e-80
                   EEEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                   riip+lD++dG+vV   kG++f+++++ gd+v la+ry++egadel+++D++a+++ r +++++v+++ae ++ip++v GGI++ ed++++le+gad
    EHU00143.1   5 RIIPCLDVRDGQVV---KGVQFRNHEIIGDIVPLAQRYAQEGADELVFYDITASSDDRVVDKSWVARVAEVIDIPFCVAGGIKTPEDAARILEFGAD 98 
                   8*************...******************************************************************************** PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE....C.EEEEETTTTEE....EEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr....g.ykvaikgwree....tgldavelakkleelgageilltdidrdGtlsGpdleltke 185
                   k++i++ a+ +p+li++la++fg q+ivv+iD++     g y+v +++++e+    t++++++++++++++gagei+l+ +++dG+++G+dl ++k+
    EHU00143.1  99 KISINSPALADPSLITRLADRFGVQCIVVGIDTWFddasGkYHVNQYTGDESrtrvTQWETLDWVQEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKK 195
                   ********************************999665538*********999999***************************************** PP

                   HHHHHSSEEEEESS--SHHHHHHHH.HTTCSEEEESHHHHTTSS CS
  His_biosynth 186 laeavkipviasGGvgsledlkelk.segvdavivgsalyegel 228
                   +++ +k+p+iasGG+g+++++ e++ +++vd+++++s+++++ +
    EHU00143.1 196 VRDVCKVPLIASGGAGTMTHFLEAFeQANVDGALAASVFHKQII 239
                   *************************66666**********9876 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.3e-07   0.00022     139     225 ..      31     115 ..      17     125 .. 0.83
   2 !    7.0   0.1    0.0017       2.7     139     212 ..     158     230 ..     149     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.3e-07
                 .HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH CS
         Dus 139 nalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae 225
                 +++ la++  ++Ga++l+    t+    +  +d ++++ v + + ip+ + G+Ik++eda +ile  Gad + i   al +P l+ +
  EHU00143.1  31 DIVPLAQRYAQEGADELVFYDITASSDDR-VVDKSWVARVAEVIDIPFCVAGGIKTPEDAARILEF-GADKISINSPALADPSLITR 115
                 56677888888888888887777655544.5677889***************************99.****************9974 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
                 .HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEE CS
         Dus 139 nalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmi 212
                 ++l+ ++ v++ Ga ++++    ++++ +   d+ + k+v++  ++p+ia G+  ++    ++ e+  +dg ++
  EHU00143.1 158 ETLDWVQEVQKRGAGEIVLNM-MNQDGVRNGYDLVQLKKVRDVCKVPLIASGGAGTMTHFLEAFEQANVDGALA 230
                 688999999999999999965.344445556788999********************99999999999999765 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   9.6e-08   0.00016     137     217 ..      36     117 ..      27     129 .. 0.78
   2 !    5.5   0.0    0.0057       9.3     165     204 ..     191     231 ..     175     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.6e-08
                 HHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESH.HHHTSSSHHHHH CS
        ThiG 137 arrleevGcaavmPlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGadavllnt.avaeakdpvamA 217
                 a+r  + G+  ++ +     s   +++k  +  + e +++P  v  Gi +p+daa  +e+Gad + +n+ a+a  + + ++A
  EHU00143.1  36 AQRYAQEGADELVFYDITASSDDRVVDKSWVARVAEVIDIPFCVAGGIKTPEDAARILEFGADKISINSpALADPSLITRLA 117
                 5555666666666666666677778888899999999******************************984566655555555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0057
                 HHHHHHHHH-SS-BEEES---SHHHHHHHHHT.T-SEEEES CS
        ThiG 165 ealkiiieeakvPvivDAGigspsdaaqamel.Gadavlln 204
                  +lk +++ +kvP+i   G g+ ++  +a+e   +d+ l +
  EHU00143.1 191 VQLKKVRDVCKVPLIASGGAGTMTHFLEAFEQaNVDGALAA 231
                 4678889999*******************995246776665 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05     0.021     184     222 ..      65     103 ..      52     109 .. 0.89
   2 !    8.7   0.0   0.00063         1     149     204 ..     163     212 ..     152     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
         NMO 184 LvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqig 222
                  v++v++++diP   aGGi + ++ a +L  GA  + i 
  EHU00143.1  65 WVARVAEVIDIPFCVAGGIKTPEDAARILEFGADKISIN 103
                 5899*****************************988775 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00063
         NMO 149 arkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiid 204
                 +++v++rGa  ++++ +++ G +    +   +l++ +++v+d+ ++P+iA GG  +
  EHU00143.1 163 VQEVQKRGAGEIVLNMMNQDGVRN--GY---DLVQ-LKKVRDVCKVPLIASGGAGT 212
                 567777777777777777777766..34...3555.579**************765 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.9e-06    0.0096     113     177 ..      40     102 ..      32     105 .. 0.78
   2 ?    3.1   0.0     0.031        51     138     160 ..     189     211 ..     161     237 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.9e-06
    TMP-TENI 113 ealgadYigvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGi.tlenvaevleagadgvav 177
                 +++gad +++  i  T++ +d ++++ + ++++ae + iP+++ GGi t+e++a++le gad +++
  EHU00143.1  40 AQEGADELVFYDI--TAS-SDDRVVDKSWVARVAEVIDIPFCVAGGIkTPEDAARILEFGADKISI 102
                 5566666665555..333.345688999999****************5589************987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.031
    TMP-TENI 138 gleglkelaealeiPvvaiGGit 160
                 +l +lk++++ +++P++a GG  
  EHU00143.1 189 DLVQLKKVRDVCKVPLIASGGAG 211
                 45556666666777777777654 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00018      0.29     202     243 ..      60     102 ..      14     104 .. 0.81
   2 !    6.4   0.0    0.0024         4     128     220 ..     112     205 ..     108     210 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
                 C--HHHHHHHHHHHSSEEEEE.EE-SHHHHHHHHHTTESEEEE CS
      FMN_dh 202 sltwddikwlreqtklplvvK.GvltaedakraveaGvdgivv 243
                  ++ + ++++ e  ++p+ v  G+ t+eda r++e G+d i +
  EHU00143.1  60 VVDKSWVARVAEVIDIPFCVAgGIKTPEDAARILEFGADKISI 102
                 44555689999999999988537****************9976 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0024
                 HHHHHHHC.TESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH..THHHH....HHCCCHB-TC--HHHHHHHHHHHSSEEE CS
      FMN_dh 128 llkraeaa.gykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaealkkasaaa....efvgkqldpsltwddikwlreqtklplv 220
                 l+ r ++  g++ +v+ +Dt+++    +   n+++  ++   r+ + +  + +w++e++ k  a +     + ++ +++  +  ++k++r+ +k+pl+
  EHU00143.1 112 LITRLADRfGVQCIVVGIDTWFDDASGKYHVNQYTGDES---RTRVTQWETLDWVQEVQ-KRGAGEivlnMMNQDGVRNGYDLVQLKKVRDVCKVPLI 205
                 666655555**************9999999998877777...44555666666777776.222222235344455668888999************98 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017      0.28     281     337 ..      63     118 ..      27     122 .. 0.84
   2 ?    1.7   0.0     0.074   1.2e+02     273     300 ..     181     209 ..     135     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
                   THHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHC CS
  Oxidored_FMN 281 ekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkk 337
                   ++ +  v ev + p+  +g+i+ +e+aa i++   ad +++  + ladp l+ +l+ 
    EHU00143.1  63 KSWVARVAEVIDIPFCVAGGIKTPEDAARILEF-GADKISINSPALADPSLITRLAD 118
                   4566789999***************77777765.57789**************9975 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.074
                   TTHHHCCTT.HHHHHHCCCHSSEEEE-SS CS
  Oxidored_FMN 273 agsvrteqe.kntefvkevwkkplitvgr 300
                    + vr  ++  ++++v+ v k+pli+ g+
    EHU00143.1 181 QDGVRNGYDlVQLKKVRDVCKVPLIASGG 209
                   44455556767889***********9997 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.25     129     171 ..      64     106 ..      59     108 .. 0.89
   2 ?    0.8   0.0      0.17   2.8e+02     131     153 ..     193     215 ..     190     238 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                   HHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE--HH CS
  G3P_antiterm 129 kvikeikkelkipiiaGGLietkedveealkaGaiavstsnke 171
                   + ++++ + ++ip+  +G i+t ed  ++l+ Ga+ +s  +++
    EHU00143.1  64 SWVARVAEVIDIPFCVAGGIKTPEDAARILEFGADKISINSPA 106
                   567899999*****************************98766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
                   HCTSTTS...EEEEESS--SHHH CS
  G3P_antiterm 131 ikeikkelkipiiaGGLietked 153
                   +k++++ +k+p+ia+G   t  +
    EHU00143.1 193 LKKVRDVCKVPLIASGGAGTMTH 215
                   57899999******995544444 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05      0.11     144     183 ..      74     114 ..      47     128 .. 0.78
   2 ?   -3.1   0.0       2.3   3.8e+03      23      36 ..     192     205 ..     182     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
                 T--EEEES---SHHHHHHHHTT--SEEEE-H.HHH-HHHHH CS
        NanE 144 glkviaeGrintPekakkaieiGvdavvvGs.aitrleeia 183
                 ++   + G i+tPe a++++e G+d + + s a++ ++ i+
  EHU00143.1  74 DIPFCVAGGIKTPEDAARILEFGADKISINSpALADPSLIT 114
                 566778999******************99875666666554 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
                 HHHHHHTT--S-EE CS
        NanE  23 dikaikavvdlPii 36 
                 ++k+++ v ++P+i
  EHU00143.1 192 QLKKVRDVCKVPLI 205
                 68999999999988 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00027      0.43     174     205 ..      68     100 ..      39     109 .. 0.82
   2 ?   -0.8   0.0      0.53   8.6e+02      49      78 ..     161     191 ..     150     219 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
                 HHHHHSSSEEEEESS--SHHHHHHHHCC.SSEE CS
        PcrB 174 lkkklekarlivGGGirsaEkAkevvea.ADvi 205
                  ++ + ++ + v GGi+ +E+A++++e  AD i
  EHU00143.1  68 RVAEVIDIPFCVAGGIKTPEDAARILEFgADKI 100
                 445555677899*******************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.53
                 HHHHHHCTSSS.-EEEEESSGGG--TTSSEE CS
        PcrB  49 rllkkvsrikl.PivlepsnvegvvryaDal 78 
                   +++v++ +   ivl   n +gv ++ D++
  EHU00143.1 161 DWVQEVQKRGAgEIVLNMMNQDGVRNGYDLV 191
                 4444444333213556666666666665555 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00034      0.55     199     234 ..      66     101 ..      35     108 .. 0.77
   2 ?   -0.2   0.0      0.24   3.9e+02     195     225 ..     189     219 ..     170     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00034
                 HHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 199 vaeaakkagvpviaDGGikysgdivkAlaaGadavm 234
                 va++a+  ++p +  GGik+ +d ++ l  Gad + 
  EHU00143.1  66 VARVAEVIDIPFCVAGGIKTPEDAARILEFGADKIS 101
                 667777778888888888888888888888887765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
                 HHHHHHHHHCTCT-EEEEES---SHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 195 AvaevaeaakkagvpviaDGGikysgdivkA 225
                  +++  ++ +  +vp+ia GG  +  +   A
  EHU00143.1 189 DLVQLKKVRDVCKVPLIASGGAGTMTHFLEA 219
                 5666677777889999**9999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2194.65
//
Query:       EHU00144.1  [L=203]
Description: phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-31  105.9   0.0    1.2e-30  105.2   0.0    1.4  1  PRA-CH    Phosphoribosyl-AMP cyclohydrolase
    2.9e-17   62.9   0.2    3.8e-17   62.5   0.2    1.2  1  PRA-PH    Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.085   13.1   0.2       0.13   12.4   0.2    1.4  1  MazG      MazG nucleotide pyrophosphohydrolase domain


Domain annotation for each model (and alignments):
>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   1.9e-34   1.2e-30       1      73 [.      33     105 ..      33     106 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 1.9e-34
                 EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS- CS
      PRA-CH   1 mlaymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkgaaCHtgkesCF 73 
                 m +ymn++alektl+ g+++++Sr++++lW+KGetSg++++v++i+ DcD+D+ll+ +++ g++CH+g++sCF
  EHU00144.1  33 MHGYMNQAALEKTLQDGNVTFFSRTKNRLWTKGETSGHFLQVVSITPDCDNDTLLVLANPIGPTCHLGTSSCF 105
                 99*********************************************************************** PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.2   6.4e-21   3.8e-17       2      82 ..     116     201 ..     115     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 6.4e-21
                 HHHHHHCT----SS----.-HHHHHH....HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHHHH CS
      PRA-PH   2 kefhrligerkpetPeas.taelasl....raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfeevhra 82 
                  ++++l+  rk+++Pe+s ta+l++     +a+++gEE vE+  aa  +d++el++e+ Dl+Y++++ll+ +++dl  +++++  +
  EHU00144.1 116 YQLEQLLASRKQADPESSyTARLYASgtkrIAQKVGEEGVETALAATVNDREELTNEASDLIYHLLVLLQDQDLDLSTIINNLRAR 201
                 689**********************9*******************************************************99877 PP

>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   2.2e-05      0.13       5      61 ..     145     197 ..     141     203 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH CS
        MazG   5 tllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaet 61 
                  +++ + eE  E a a   +dr+el++E  D+++++l l +    ++++dl++++++
  EHU00144.1 145 RIAQKVGEEGVETALAATVNDREELTNEASDLIYHLLVLLQ----DQDLDLSTIINN 197
                 5677888999999999999**********************....699999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1460.16
//
Query:       EHU00145.1  [L=158]
Description: prolyl-tRNA synthetase-associated domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-26   92.7   0.1      2e-26   92.5   0.1    1.1  1  tRNA_edit     Aminoacyl-tRNA editing domain
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.071   13.4   0.0    2.1  1  TAL_effector  TAL effector repeat


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.1   2.2e-30     2e-26       1     122 [.      23     147 ..      23     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 2.2e-30
   tRNA_edit   1 tpgtktieelaaalgvdpsaiaKtlvlkd...kkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDesl 96 
                 +++t ++e++a+ +g++ ++ aK+lv ++   + +++vl++lp+d+++dl k+a ++g+++++las++e+  l+g++ G+++P++  + +++v++D+ l
  EHU00145.1  23 HEATGKCEAVAKIRGTAVGQGAKALVCHVkgnGVKQHVLAVLPADQQADLSKVASAVGGRRASLASPAEVDVLTGCVFGAIPPFSF-HPDLTVVVDPLL 120
                 789999***********************7777777**************************************************.6*********** PP

   tRNA_edit  97 keyp.tvvvgagengatlelspedlrk 122
                  e+  +++++ag  ++++ l ++d+r 
  EHU00145.1 121 FERYdEIAFNAGVLDQSVVLNTQDYRG 147
                 *98879*****************9985 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.9e-06     0.071      10      30 ..     133     156 ..     131     156 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
                   HHHHHHHHHH...TT--HHHHHHH CS
  TAL_effector  10 VlahgpaLrq...rGfSradIVkI 30 
                   Vl++  +L+    rG+++a IVkI
    EHU00145.1 133 VLDQSVVLNTqdyRGLCQANIVKI 156
                   99999999999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1167.18
//
Query:       EHU00146.1  [L=103]
Description: periplasmic substrate-binding component of an ABC superfamily cationic amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   69.7   0.0    2.7e-19   69.5   0.0    1.1  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   1.5e-23   2.7e-19       1      67 [.      33      99 ..      33     103 .] 0.96

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 1.5e-23
                EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaait 67
                +r++vd++ypPf+ k+++g+l+Gfd+dl +a++++++ k+ +v+  +d++ipalk+ k+D++ +++ 
  EHU00146.1 33 VRFAVDPTYPPFESKTPQGKLVGFDIDLGNALCAQMQAKCVWVESQFDGMIPALKARKFDAILSDMG 99
                689****************************************99*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 763.14
//
Query:       EHU00147.1  [L=154]
Description: periplasmic substrate-binding component of an ABC superfamily cationic amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-27   94.1   0.0    8.8e-27   94.0   0.0    1.0  1  SBP_bac_3       Bacterial extracellular solute-binding protei
    0.00057   19.9   0.0    0.00075   19.5   0.0    1.1  1  NMT1            NMT1/THI5 like
  ------ inclusion threshold ------
      0.015   14.9   0.3        2.3    7.7   0.1    2.6  3  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   1.5e-30   8.8e-27      81     224 ..       2     147 ..       1     148 [. 0.94

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.5e-30
                 ESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  81 pyfsagqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv 178
                 p +++ ++l++rk++      ++++++Lkgk+vgv +g+++e +++ +++  g+++v++ +++++  +L +gr dav++d + +a+   k+p + +++ 
  EHU00147.1   2 PLYDTHTQLIARKGSG----LLPTPESLKGKTVGVEQGTVQERYARAKWQPfGVTVVPYGDQAQVESDLVAGRLDAVFTDAAQAANGFLKQPQGSAFEL 96 
                 889*********9753....688899*********************9999999****************************99988888888888888 PP

                 .....ECGGCECEEEEEEETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 179 .....eeplsseeyaiavrkgdseLrkainkalaelkadgtlakisekWfg 224
                      + p+ +++ ai++ kgd+eL++a+++a+a++k++gt++k+++k+f 
  EHU00147.1  97 agpivKDPIIGPGTAIGLCKGDTELKTALDDAFAAIKKNGTFDKLQKKYFA 147
                 8************************************************95 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00075      74     145 ..       7      75 ..       3     101 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                 -EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHH.HHHCTSSSEEE CS
        NMT1  74 lsglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslak.alltgkvDaai 145
                  ++li++k+sg + +p++LkGk++g+ ++ +++   +     +  +p  vt+v++g    ++ +l++g+ Da++
  EHU00147.1   7 HTQLIARKGSGlLPTPESLKGKTVGVEQGTVQERYAR-----AKWQPFGVTVVPYGDQAQVEsDLVAGRLDAVF 75 
                 5789*********************999755555555.....5555555699999766555559*******998 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0042        25      86     111 ..       7      33 ..       4      37 .. 0.89
   2 ?    7.7   0.1   0.00039       2.3      31      63 ..      51      83 ..      44      94 .. 0.89
   3 ?   -1.6   0.0      0.27   1.6e+03     203     222 ..     118     137 ..     114     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0042
                     EEEEEEETTSS.--SHHHHGG-EEEE- CS
  Phosphonate-bd  86 rsviivradsd.iqsledLkgktiafv 111
                     ++++i+r++s+ + + e Lkgkt++++
      EHU00147.1   7 HTQLIARKGSGlLPTPESLKGKTVGVE 33 
                     899********8889*********986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00039
                    EEEE--SSHHHHHHHHHTTS-SEEE--HHHHHH CS
  Phosphonate-bd 31 velvvatdyaavvealragqvDiaflgplayvq 63
                    v +v++ d a+v+  l ag++D +f+++ ++++
      EHU00147.1 51 VTVVPYGDQAQVESDLVAGRLDAVFTDAAQAAN 83
                    8899************************99987 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.27
                     -HHHHHHHHHHHHH---SHH CS
  Phosphonate-bd 203 seelkekiqdallslaetee 222
                     + elk ++ da+ +++++  
      EHU00147.1 118 DTELKTALDDAFAAIKKNGT 137
                     56889999999999987533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 1043.62
//
Query:       EHU00148.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00148.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00148.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00148.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00148.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00148.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00148.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00148.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00148.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00148.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00148.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00148.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00148.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00148.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00148.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00148.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00148.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00148.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2436.67
//
Query:       EHU00149.1  [L=422]
Description: O-antigen ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-10   40.4   1.3    2.1e-10   40.4   1.3    4.0  4  Wzy_C          O-Antigen ligase


Domain annotation for each model (and alignments):
>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.1  12.4         1   1.8e+04      25      70 ..      48      94 ..      15     171 .. 0.56
   2 !    3.1   0.2    0.0037        67      14      56 ..     172     217 ..     160     219 .. 0.51
   3 !   40.4   1.3   1.2e-14   2.1e-10       3     154 ..     208     358 ..     205     359 .. 0.86
   4 ?   -2.8   5.5      0.24   4.3e+03       4      58 ..     360     412 ..     357     419 .. 0.73

  Alignments for each domain:
  == domain 1  score: -9.1 bits;  conditional E-value: 1
       Wzy_C 25 alivlliifykrri.......pfllllgilvgvilliilfvlstnletlknit 70
                ++i++li+  k+++              +++++  ++i+ ++   +  + +i+
  EHU00149.1 48 LCIFILIFKAKELLrgklfqkN------FVLLISSFFIFGLVRIFWAEFISIK 94
                3444444444444443333220......3333333333333333333333322 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0037
       Wzy_C  14 tsRsgiigllvalivlliifykrri..pfllllg.ilvgvilliil 56 
                 ++ s+   +++ +    ++++ ++   ++ll+ + +++ + +l+il
  EHU00149.1 172 NAPSSTAYMVIFMYCSYLWLPIKKAnkKWLLVDMlLMISIFCLVIL 217
                 4444444444444444444444444345666666555555555555 PP

  == domain 3  score: 40.4 bits;  conditional E-value: 1.2e-14
       Wzy_C   3 lllsllalflstsRsgiigllvalivlliifykrri..pfllllgilvgvilliilfvlstnletlknitkafgkldkkkgkdksgssRlyiwkralpl 99 
                 ++ ++++++ls++R ++++ +++ ++ +  +y      + ++  +i+++vi +i++++ ++  e++ ni+  +      k+ ++s + R++iw+++l+ 
  EHU00149.1 208 MISIFCLVILSGTRIAFLAYFFITLYQINRHYGLMNilKPMRNRLIALVVISVIAFLSGNRWVEAFNNIKEYD------KNSSTSVGARVAIWDSGLHF 300
                 56688*************996666665555554443778888899999999*******999999999998766......89999*************** PP

       Wzy_C 100 ikdspilGtG.....vfdfpqgdligkyyaydtpnivvdkaHNlyLqilvetGiiGlvlf 154
                 + ++   G        +   ++ + ++  + + +++v+ + HN++L++    Gi Gl+ +
  EHU00149.1 301 FPEHL--GFTspdvrTKSAREYIALYHTGNAEAYKNVQSNMHNEFLDVSTLQGIAGLASL 358
                 ****5..77788*9888888899999999999*************************976 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.24
       Wzy_C   4 llsllalflstsRsgiigllvalivlliifykrripfllllgilvgvilliilfv 58 
                 ++   +l++  sR  ++g++ +  +l+i+++   +  l++++ +++ i+  +l v
  EHU00149.1 360 FIYYSVLMIWISRNVLMGIAMPATALFIMGMTDTV--LFFPATAMLFIISTALCV 412
                 55566777778999999999999999999999999..777776665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3034.95
//
Query:       EHU00150.1  [L=344]
Description: lipopolysaccharide 1,6-galactosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-25   88.2   0.0    8.7e-25   87.2   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    1.9e-21   76.9   0.0    3.7e-21   76.0   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
      3e-06   27.3   0.3    7.9e-06   26.0   0.3    1.7  1  Glyco_transf_4   Glycosyltransferase Family 4
     0.0013   19.1   0.0     0.0031   17.9   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.029   14.8   0.0      0.047   14.1   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
      0.071   12.9   0.1       0.11   12.3   0.1    1.4  1  DUF2451          Protein of unknown function C-terminus (DUF2


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   2.9e-28   8.7e-25      18     158 ..     165     306 ..     159     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.9e-28
                      EEEESS-TTT..TTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCH..SSSHHHHHHCESEEEEEESSBSS-H CS
  Glycos_transf_1  18 ilsvgrleke..KgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevs..redleellknadifvlpsisEgfGi 107
                      +l++gr+  e  K ++ l +a++ +    +  + l ++G+g +++  +  +++ ++s++++++g ++  ++ + ++++   ++vl+s  Egf++
       EHU00150.1 165 FLFIGRIHFEdqKQLKDLFDALKNV----KGLWALDVVGDGCDLALCQTYSKQIGISEKIHWHGWQKspWDYVQNVIQEVTCLVLTSNHEGFPL 254
                      7899997653227777777777766....678********************************999778899999999*************** PP

                      HHHHHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHS CS
  Glycos_transf_1 108 vllEAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairklled 158
                      +llEAm+ g+ +i+s+ ++gp+e++ +g++Gll+k n++++l + ++k+++ 
       EHU00150.1 255 TLLEAMSRGVFCISSDcISGPSEIISEGVNGLLYKVNDVAQLTNLLQKIVDG 306
                      ************************************************9875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.2e-24   3.7e-21       3     131 ..     164     303 ..     163     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.2e-24
                      EEEEES--.-GG.GTHHHHHHHHHHHH.HH.EEEEEES---...HHHHHHHT..T-T.TEEEE---...TH.HHHHHHH-SEEEE--..---SH CS
  Glyco_trans_1_4   3 vilfvGrl.eenvkgvdllleavpllrkkd.vrlvivGdgp.rpeeleelaa..gleerveftGfv...ed.laellaaadvfvaPs..egfgl 85 
                      ++lf+Gr+  e +k+++ l +a++ ++    + l +vGdg+  +  ++ + +  g++e+++++G+     d +++++++++++v++s  egf+l
       EHU00150.1 164 RFLFIGRIhFEDQKQLKDLFDALKNVK--GlWALDVVGDGCdLA-LCQTYSKqiGISEKIHWHGWQkspWDyVQNVIQEVTCLVLTSnhEGFPL 254
                      689*****55599**************..44*********8654.3333333569*9*********765236****************99**** PP

                      HHHHHHHTT-EEEE-TGG.GTTT--..TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  86 kllEamaaglpvVatdvg.giaevv..gengllvppgdpealaeailrL 131
                      +llEam+ g+ ++++d+  g++e++  g+ngll + +d+++l++ ++++
       EHU00150.1 255 TLLEAMSRGVFCISSDCIsGPSEIIseGVNGLLYKVNDVAQLTNLLQKI 303
                      ****************9659******99**********99998877665 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.3   2.6e-09   7.9e-06      57     166 ..      56     150 ..      38     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.6e-09
  Glyco_transf_4  57 slaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVlt.vHglyekrllkarlkplsrllralerrllrradrviavSeatadelre 150
                     +la++ rl+  ++++k+  v a + +++++a  al + +++ + ++ +H +                 +++  + l +ad  +a+S++++++l++
      EHU00150.1  56 NLAHVIRLAMFIRKHKITYVVALNTIPCLLARKALNLSRQKGILYSwMHLP---------------PKQRYRPHYLLKADEHLAISNEIKQQLVD 135
                     566677777777777777776666666666666666644444444413333...............466667778899***************** PP

  Glyco_transf_4 151 rygvppekitVipnGv 166
                      +g  +e+i+Vi+n+v
      EHU00150.1 136 -LGAGAEQIHVIYNPV 150
                     .*************99 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0031       4      57 ..     245     301 ..     241     305 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
  Glyco_trans_1_2   4 npsrsespnlrlfEaaacGafaltdda.egleelftpgkevilfe..dleelaekir 57 
                       +s++e++ l l+Ea+  G+f +++d  +g+ e++++g  ++l++  d+++l   ++
       EHU00150.1 245 LTSNHEGFPLTLLEAMSRGVFCISSDCiSGPSEIISEGVNGLLYKvnDVAQLTNLLQ 301
                      48999********************999****************9877777766655 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05     0.047      88     159 ..      64     148 ..      55     149 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
  Glyco_trans_4_4  88 arlarrrrgiplvvtlhg...lllrrg...sgavrrlyral.....er...rllrradavlvvseaeaeelralgvpadrvvvvpn 159
                      a+++r +++i +vv l +   ll r+    s+ ++ ly ++     +r     l  ad  l++s+++ ++l++lg+ a++++v+ n
       EHU00150.1  64 AMFIR-KHKITYVVALNTipcLLARKAlnlSRQKGILYSWMhlppkQRyrpHYLLKADEHLAISNEIKQQLVDLGAGAEQIHVIYN 148
                      55566.78888888887433322222234444555555555333443355578889****************************99 PP

>> DUF2451  Protein of unknown function C-terminus (DUF2451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.7e-05      0.11      91     191 ..     230     325 ..     124     341 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
     DUF2451  91 ssYvdqllkevesfskklqelkerlklpeevkkalweaavevvtetLvegyskvkkcseeGRalMqlDvqqllakleklskiksvpnleyveeYIkayy 189
                   Yv+++++ev+++  + ++     + p  + +a+  + v ++++  ++g s++     +G    + Dv ql++ l+k+++   +p +++v++ +k +y
  EHU00150.1 230 WDYVQNVIQEVTCLVLTSNH----EGFPLTLLEAMS-RGVFCISSDCISGPSEIISEGVNGLLYKVNDVAQLTNLLQKIVDGYAFPSTDIVKASVKSFY 323
                 55666666666665544444....334444444443.344466666667777766666666677788***************99*************** PP

     DUF2451 190 lp 191
                 lp
  EHU00150.1 324 LP 325
                 99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2629.15
//
Query:       EHU00151.1  [L=370]
Description: succinylglutamate desuccinylase/aspartoacylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-19   70.3   0.0    4.4e-18   65.4   0.0    2.3  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
     0.0049   16.7   0.0     0.0095   15.8   0.0    1.4  1  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   4.9e-22   4.4e-18       2     205 ..      29     280 ..      28     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 4.9e-22
                 S-EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC....ESCCEEEEEESSHHHHHCTS......SSSSTT-S-CT.......................... CS
   AstE_AspA   2 gpkvlisAGvHGnElaGvellrqllkqleead....ilgeitlvplaNppAiaags......RyipidredLN.......................... 64 
                 +++v+i+A++HG+E+ G++++  l k+l+  +    +++  tl+p+ Np+A+ ++       R+   + +d+N                          
  EHU00151.1  29 TRQVYIQAALHGDEIPGMAVAWFLKKRLQMLEssgrLKSSFTLIPVSNPIALSQHWhgthlgRFHTQNGKDFNrkfpslgatlitelanvltpneiqnk 127
                 579*********************99999888777788999**************98999999999***************************999999 PP

                 ........TTTTCCCCCSSTCHHHHHHHHHHHHHHHCHCTCCCGCEEEEEEEESSTBCCSSEEEE---SSHHHHHHHHHHTTTSEEEEEESS--S.... CS
   AstE_AspA  65 ........RaFpgrslgrsldealrateaerladalfaaalpeadivlDLHtgtrglkhllfaeadiaeaqlqslallkalglpavllldekesa.... 151
                         R ++    +         te+e     l ++a  +ad+ +DLH++ ++  hl+     + e       +++ lg ++ ll+++++      
  EHU00151.1 128 rlirdaidRYYRDAVPK---------TELEAQRFTLMRMA-SQADLMIDLHCDWEAVPHLYTTPHAWSEI----EPFARWLGSEVQLLAQNSGGEpfde 212
                 55555555555555555.........**************.6********************97777666....5699999******777777779*** PP

                 ...........SHHHHHHHHCTSEEEEEEEES.TTTTCCHHCCHHHHHHHHHHHHCTCHTT.-..SCC CS
   AstE_AspA 152 ...........gfletaaeelgalaftlElGgagrlgaedisrtakgvlnvlahigvvagq.e..ave 205
                             f + +    g l +tlEl g +++++e+++r+a ++ n l+++  ++ +    +ve
  EHU00151.1 213 accepwltlaeRFGDKFPMPRGLLPVTLELCGLHDVSPEQAERDADAIINALQELDYITASeAavSVE 280
                 *******77777777777777999*******************************9999883333333 PP

>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0095      45     188 ..      28     174 ..       8     206 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-06
                    T-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSST.. CS
  Peptidase_M14  45 gkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdlw.. 138
                      ++v i++ +H++E+ g a++  l + L       e   + l++  + ++pv NP   ++s+     w  ++     +++ G+D+nR Fp+l   
     EHU00151.1  28 HTRQVYIQAALHGDEIPGMAVAWFLKKRLQML----ESSGR-LKSS-FTLIPVSNP--IALSQ----HWHGTHLGRF-HTQNGKDFNRKFPSLGat 110
                    56899**************9997777777653....33333.3444.79*******..88888....5765532222.2468********777223 PP

                    ..............TSSSSBSSTTSTTBHHSSTT.SHHHHHHHHHHHHTTEEEEEEEEESSSEE CS
  Peptidase_M14 139 ..............nsegastspcsetyrgpapfsepetravlefiqkknivlfidlhsysqvi 188
                                  +++    +  +  yr++ p+ e e +    + +  +  l+idlh   +++
     EHU00151.1 111 litelanvltpneiQNKRLIRDAIDRYYRDAVPKTELEAQRFTLMRMASQADLMIDLHCDWEAV 174
                    3433333333322122234455555556666665555555555554559999999999655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2615.40
//
Query:       EHU00152.1  [L=364]
Description: O-antigen lipopolysaccharide chain length regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   51.2   4.7    1.6e-13   50.8   0.4    2.8  2  Wzz           Chain length determinant protein
    4.8e-06   26.4   0.0    4.8e-06   26.4   0.0    3.2  3  GNVR          G-rich domain on putative tyrosine kinase
      0.007   16.0   0.2      0.058   12.9   0.1    2.0  2  Sulf_transp   Sulphur transport
  ------ inclusion threshold ------
      0.021   15.1   0.6       0.48   10.7   0.2    2.3  2  Peptidase_A8  Signal peptidase (SPase) II
      0.029   14.3   0.3          4    7.3   0.0    2.2  2  DUF1275       Protein of unknown function (DUF1275)
      0.072   12.5   0.8        0.2   11.1   0.0    1.9  2  DUF554        Protein of unknown function (DUF554)
        2.8    7.8   5.9        2.7    7.8   0.3    2.7  2  LapA_dom      Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.4   6.1e-17   1.6e-13       5      73 ..      56     129 ..      52     138 .. 0.76
   2 ?    0.9   0.4      0.22   5.6e+02      14      33 ..     331     350 ..     330     354 .. 0.71

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 6.1e-17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHH...HHHHHHCC...HHHHHHHHHH CS
         Wzz   5 LieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqv...eassltaq...dvqanlqlas 73 
                 ++ ++  Lw++++++i+  +++++l++iy+++a++k+t+ta+++ p+  qv   +  +l ++   + q+  + ++
  EHU00152.1  56 VLAIFCKLWDGRWVVIISMIVALILGIIYLMIAPQKWTSTATVTLPSAGQVanyN-ATLAVLysdNSQDKPSIIN 129
                 678999********************************************95321.2222224434444444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
                 XXXXXXXXXXXXXXXXXXXX CS
         Wzz  14 krkklIilvtllfallaviy 33 
                 k++++Iil  +l+a+++ i+
  EHU00152.1 331 KKSIIIILSLILGAMIGSII 350
                 56677888888888777765 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   3.1      0.51   1.3e+03      61      78 ..      69      86 ..      66      88 .. 0.87
   2 ?   -0.2   0.1      0.38   9.9e+02      10      32 ..     213     235 ..     204     251 .. 0.69
   3 !   26.4   0.0   1.9e-09   4.8e-06      42      81 ..     316     355 ..     292     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.51
        GNVR 61 ivvlalllGlllgvalvl 78
                +v+++++++l+lg+ + +
  EHU00152.1 69 VVIISMIVALILGIIYLM 86
                8999*********99876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
        GNVR  10 trDvevnteiYtqLlnkaqelev 32 
                 tr++++  ++Y +L + ++e ++
  EHU00152.1 213 TRELKNVINTYKKLAQDKKEHRI 235
                 56667777788888666666655 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 1.9e-09
        GNVR  42 rivDeavvpekpvkPkkalivvlalllGlllgvalvllrr 81 
                 r v  a+ p+++ +Pkk++i++l+l+lG+++g  +vl r+
  EHU00152.1 316 RYVSPADLPSHRGSPKKSIIIILSLILGAMIGSIIVLNRN 355
                 778999*******************************997 PP

>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.3e-05     0.058     134     224 ..      19     115 ..       5     153 .. 0.56
   2 ?    0.8   0.0      0.12     3e+02     229     247 ..     332     350 ..     303     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
  Sulf_transp 134 lllialllliallllvkelrkeklqeae......klektslakklfrkpwslvlgavllgllavlawllsaktgrsfglgftvpga.kilqylvlgts 224
                  ++l +ll+ i + l  + +rk+ l ++e      ++e  +++ kl  ++w ++++ +++ +l+++ ++++ +   +++ ++t+p+a ++++y ++   
   EHU00152.1  19 YILFTLLANIRMNLDDVVKRKNSLPSKEksnqydENEVLAIFCKLWDGRWVVIISMIVALILGIIYLMIA-PQKWTSTATVTLPSAgQVANYNATLAV 115
                  34444444454444333445555555554444545666688899**************999999988886.433444456666655255555433222 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
  Sulf_transp 229 wgvvlvlGiilGaflaall 247
                   +++++l++ilGa++ +++
   EHU00152.1 332 KSIIIILSLILGAMIGSII 350
                  4678999999999999876 PP

>> Peptidase_A8  Signal peptidase (SPase) II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00019      0.48      42      96 ..      57     109 ..      18     118 .. 0.74
   2 ?    2.3   0.0      0.07   1.8e+02      78      97 ..     331     350 ..     316     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
  Peptidase_A8  42 aafgllesgakrkllillslvvill.livlllkkkkkskllri.alalilgGalGNl 96 
                    a   ++  ++r+++i+ ++v+++l +i+l++     +k++++ +++l  +G ++N+
    EHU00152.1  57 LAIF-CKLWDGRWVVIISMIVALILgIIYLMI-A-P-QKWTSTaTVTLPSAGQVANY 109
                   4444.344456798888887665553666665.3.3.45665548999999999996 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.07
  Peptidase_A8  78 skllrialalilgGalGNli 97 
                   +k   i+l+lilg+ +G++i
    EHU00152.1 331 KKSIIIILSLILGAMIGSII 350
                   4567789**********997 PP

>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4      0.01        27      73     116 ..      64     108 ..      51     117 .. 0.70
   2 ?    7.3   0.0    0.0016         4     153     175 ..     331     353 ..     289     360 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.01
     DUF1275  73 rrrrlvllleallllaaallvpagsvsp.lalallafamGlqnal 116
                 +  r+v+++++++ l+++++    ++++   +a + + +++q+a 
  EHU00152.1  64 WDGRWVVIISMIVALILGIIYLMIAPQKwTSTATVTLPSAGQVAN 108
                 456999999977777777664433333367888888888888875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
     DUF1275 153 nrrlaiilafllGavvGallvks 175
                 ++ ++iil+++lGa++G ++v  
  EHU00152.1 331 KKSIIIILSLILGAMIGSIIVLN 353
                 45678************999865 PP

>> DUF554  Protein of unknown function (DUF554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.34   8.8e+02     151     164 ..      71      84 ..      56     109 .. 0.59
   2 ?   11.1   0.0   7.8e-05       0.2      52      78 ..     331     357 ..     318     363 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.34
      DUF554 151 fsalpvlvyqgait 164
                 +++++v ++ g+i+
  EHU00152.1  71 IISMIVALILGIIY 84 
                 22333333333332 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.8e-05
      DUF554  52 envllvilslvlGaviGelldleerle 78 
                 ++ +++ilsl+lGa+iG+++ l++++ 
  EHU00152.1 331 KKSIIIILSLILGAMIGSIIVLNRNVL 357
                 47899***************9998775 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.9      0.11   2.8e+02      22      39 ..      69      86 ..      59      96 .. 0.68
   2 ?    7.8   0.3    0.0011       2.7      20      40 ..     333     353 ..     332     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
    LapA_dom 22 lllvafgiGallgwllsl 39
                ++++++++ ++lg++  +
  EHU00152.1 69 VVIISMIVALILGIIYLM 86
                566666666666665544 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
    LapA_dom  20 sllllvafgiGallgwllslw 40 
                 s+++++++++Ga++g ++ l 
  EHU00152.1 333 SIIIILSLILGAMIGSIIVLN 353
                 79**************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1577  (0.0879581); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2770.46
//
Query:       EHU00153.1  [L=469]
Description: gluconate-6-phosphate dehydrogenase, decarboxylating [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.1e-130  434.3   0.1   3.1e-130  433.7   0.1    1.2  1  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
    7.2e-53  179.0   0.0    1.1e-52  178.4   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0017   18.4   0.0     0.0046   17.0   0.0    1.7  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0023   18.5   0.0     0.0059   17.2   0.0    1.8  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.029   14.3   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.024   14.0   0.1      0.049   13.0   0.0    1.6  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
       0.04   14.2   0.1      0.095   12.9   0.1    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
        0.1   12.1   0.1        1.3    8.6   0.0    2.6  3  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.7   0.1  1.4e-133  3.1e-130       1     289 []     179     467 ..     179     467 .. 0.98

  Alignments for each domain:
  == domain 1  score: 433.7 bits;  conditional E-value: 1.4e-133
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvp 99 
                 GhyVKmvHNGieygdmqliaEay+llk +lglsnee+a++F++Wn+gel+syLi+it++i+ kk++e +++l+d+ilD+a +kGTgkwt+q++l+lg p
  EHU00153.1 179 GHYVKMVHNGIEYGDMQLIAEAYALLKGALGLSNEELAKTFNDWNNGELSSYLIDITKDIFIKKNDE-DNYLIDVILDEAANKGTGKWTSQSSLDLGEP 276
                 9*************************************************************99985.66***************************** PP

        6PGD 100 vptiaeavfaRllSslkeervkaskllkeeee.keeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiIrakfldki 197
                 +++i+e+vfaR+lSslk++rv+ask+l+++ + +++ dk+efie++r+Aly++kivsYaqg+++lkaas++y+w+l+++eia+i+r+GCiIra+fl+ki
  EHU00153.1 277 LSLITESVFARYLSSLKTQRVAASKVLSGPVSqTFNGDKSEFIEKVRRALYLGKIVSYAQGFSQLKAASEQYNWDLQYGEIAKIFRAGCIIRAQFLQKI 375
                 ***************************876656999*************************************************************** PP

        6PGD 198 keafeknpelenllldpefakelkealealrrvvalaveagipvpalsaalaYldslrserlpanliqaqrDyFGahtyervdkegkfhteW 289
                 ++a++++ +++nlll+p+f+k  +e+++alr+vv+++v++gip+p++saa++Y+ds+rs+ lpanliqaqrDyFGahty+r+dkeg+fhteW
  EHU00153.1 376 TDAYAEDFNIANLLLAPYFKKIADEYQQALRDVVTYGVQSGIPTPTFSAAISYYDSYRSAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 467
                 ******************************************************************************************** PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.0     5e-56   1.1e-52       1     158 []       5     174 ..       5     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 5e-56
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdilidg 89 
                    +ig++G++vMG+n+aln++++gy+v+v+nr++ek++e++ae+    +k+++siee+v+sl   + +++mv+ag+a+d++i +l ++l+kgdilidg
     EHU00153.1   5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTDEVIAENpgkkLKPFYSIEEFVDSLekpRRILLMVQAGEATDKTIASLTPHLDKGDILIDG 100
                    69***************************************88899************************************************** PP

                    S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE.......EEEEE-E CS
  NAD_binding_2  90 stsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga.......kvthviG 158
                    +++ ++dt++++kel+ekg++f++++VSGGeegA kG+ sim+GG++ a+e v+p+l++i+a       +vt ++G
     EHU00153.1 101 GNTFYKDTIRRNKELSEKGFNFIGTGVSGGEEGALKGP-SIMPGGQKHAYEMVAPILNEIAAraddgdaCVT-YVG 174
                    **************************************.***********************8888886666.556 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06    0.0046      11      73 ..       2      61 ..       1      66 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.1e-06
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHH CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkell 73
                  +++++ ++G   m++ +a ++ ++g++ v v+NR++e+ +e+  e  g+  + +++ +++e +
    EHU00153.1  2 SKQQIGVVGMAVMGRNLALNIESRGYT-VSVFNRSREKTDEVIAENPGK--KLKPFYSIEEFV 61
                  6899***********************.*************99999888..566666666655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.6e-06    0.0059       1      94 [.       5     100 ..       5     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.6e-06
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHH.HHHHHC......-EEECECHHHHHHH-SEEEE-S-H.HHHHHHHHHCGHHHHTT CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaee.laeelg......vkvtavdneeaaeeadvvvlavkp.edveevlselakdalkg 88 
                    +ig++G+  mg+ la+++ ++g   + + v  +r+ ek +e +ae+ g         +  +  + +e+   ++l v+  e++++++++l+++++kg
     EHU00153.1   5 QIGVVGMAVMGRNLALNIESRG---YTVSVF-NRSREKTDEvIAENPGkklkpfY--SIEEFVDSLEKPRRILLMVQAgEATDKTIASLTPHLDKG 94 
                    59********************...****88.66666666515566566666422..3335888888999******98366789************ PP

                    SEEEEE CS
  F420_oxidored  89 klvisv 94 
                     ++i+ 
     EHU00153.1  95 DILIDG 100
                    ****95 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.3e-05     0.029       1      40 [.       5      44 ..       5      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                +++v+G  +mG+ +a  + s+g++V ++++s+e+ +++ +
  EHU00153.1  5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTDEVIA 44
                69****************************9999888765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.2e-05     0.049      35      74 ..       2      43 ..       1     102 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
                  TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..C CS
  2-Hacid_dh_C 35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..e 74
                  s++++G++G+  +G+++a  +++ g  v +++rs++k++   
    EHU00153.1  2 SKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTDevI 43
                  6799******************************99887442 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.2e-05     0.095       1      40 [.     177     217 ..     177     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlae.kaGldpekvle 40 
                     GaG+ vK+v+n +    +  ++Ea +l++ ++Gl  e++ +
      EHU00153.1 177 GAGHYVKMVHNGIEYGDMQLIAEAYALLKgALGLSNEELAK 217
                     9*************************998357998887766 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00058       1.3       3      48 ..       2      48 ..       1      99 [. 0.80
   2 ?   -1.1   0.0      0.56   1.2e+03     111     129 ..     169     187 ..     157     200 .. 0.80
   3 ?   -0.9   0.0      0.47     1e+03      78      98 ..     319     339 ..     314     344 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00058
                HTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHH.HHHHTT CS
        IlvN  3 kgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvk.kAkeeg 48
                ++++i v+G+   G++ aln+   g  v v +r+ +k+ +  A++ g
  EHU00153.1  2 SKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTDEvIAENPG 48
                5789**************************99988875431455555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.56
                 EEEEEEESS-SHHHHHHHH CS
        IlvN 111 dvvlvAPkgpGhlvreeye 129
                  v+ v P g Gh v+  ++
  EHU00153.1 169 CVTYVGPDGAGHYVKMVHN 187
                 588899*******998765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.47
                 HHHTGGG--TT-EEEESSSHH CS
        IlvN  78 eeeiepnlkegkalafahGfn 98 
                  e+++  l  gk++++a+Gf+
  EHU00153.1 319 IEKVRRALYLGKIVSYAQGFS 339
                 57899999***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3566.75
//
Query:       EHU00154.1  [L=337]
Description: UDP-glucose 4-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-54  186.1   0.0    1.3e-54  185.8   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.2e-51  174.6   0.0    2.7e-51  174.4   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    7.4e-15   54.8   0.1    2.7e-13   49.7   0.1    2.7  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    3.8e-14   52.4   0.3    6.5e-14   51.6   0.3    1.4  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.2e-08   33.6   0.1    7.9e-07   28.5   0.1    2.2  1  NAD_binding_4    Male sterility protein
      1e-05   25.5   0.0    1.7e-05   24.8   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
    0.00022   20.7   0.0    0.00047   19.7   0.0    1.7  1  adh_short        short chain dehydrogenase
    0.00022   21.2   0.0    0.00042   20.3   0.0    1.3  1  KR               KR domain
    0.00029   20.0   0.0    0.00053   19.2   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0061   16.2   0.0      0.049   13.2   0.0    2.1  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   7.2e-58   1.3e-54       1     331 [.       4     324 ..       4     325 .. 0.89

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 7.2e-58
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    LiTG+ G+iGs+++  L++ +y+v+++++ s+s   + i++l+        ++l ++ g + +s  l++++ ++++  v+++A+ + V++s+++P 
     EHU00154.1   4 LITGGCGYIGSHTVLTLMNADYDVVVLDDFSNSS-RHVISRLEAL----SGKQLVVYDGSVLNSLLLKEIFTKHNVSDVIHFAGSKSVNESIKEPL 94 
                    9*************************99876664.3444444432....245799***************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS--.---SHHHHHHHHHHHHHHHHHHH.H---EEEEEE-E....EEST CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpf.yPrsPYaaaKlyadwivvnyrea.yglfavngilfn....hesp 186
                    y++e+nv Gtl LL+ + +++++    ++++S+++vYG+v+++p tE+  + + ++PY+ +Kl+a+ i  ++  + +++ a++ ++fn    hes 
     EHU00154.1  95 YYYENNVSGTLILLKTMLQANVK---NIIFSSSATVYGSVEKIPLTEDCYVgNTTNPYGSSKLIAEKILSDICLSnQDFNATILRYFNpvgaHESG 187
                    *****************999986...6899******************8874789****************987736799************9999 PP

                    TS-TT..SCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH...... CS
  GDP_Man_Dehyd 187 rrget..fvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeee 279
                    + ge+   v +++ ++++++a gk + l++ G  +++ d + v+D++++m+l            a+g+   ++  ++ ++l++ +  + +g ++ e
     EHU00154.1 188 KIGESprGVPNNLLPYITQVAIGKLPLLKIyGSDYSTPDGTGVRDFIHVMDL------------AEGHLAALKHRNKTKNLNVYNLGTGRGYSVLE 271
                    99985449******************99855********************8............56777777777778888888777788888877 PP

                    .......TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 280 .vgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                     v++ ++ ++++++++ + +rpg+  +++ d s a  +L+W++k s+++++r+
     EHU00154.1 272 lVKAFENISRIKIPYEIVSRRPGDIAECWSDSSLAMADLNWSAKRSLDDMMRD 324
                    356668899*****************************************996 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   1.5e-54   2.7e-51       1     241 []       3     262 ..       3     262 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 1.5e-54
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 il+tG+ G+iGs++v  l++++y+v++ld  s++s++   +          ++++ ++++  l+++f ++++  vih+A+ ++v++s+++p +++e+n+
  EHU00154.1   3 ILITGGCGYIGSHTVLTLMNADYDVVVLDDFSNSSRHVISRLEalsgkqlVVYDGSVLNSLLLKEIFTKHNVSDVIHFAGSKSVNESIKEPLYYYENNV 101
                 8******************************99998866554488***99999********************************************** PP

                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTST CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.......ngegev 182
                  gtl ll+ + +a+vk+++f sS++vYG ++++p +e++    + ++++pY+ +Kl +ek++ ++  ++ ++na+ilr+fn +G++        + g +
  EHU00154.1 102 SGTLILLKTMLQANVKNIIFSSSATVYGSVEKIPLTEDC---YVgNTTNPYGSSKLIAEKILSDICLSNqDFNATILRYFNPVGAHesgkigeSPRGVP 197
                 ***************************************...668************************99****************999984445557 PP

                 TSHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 183 srvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 ++++p +i++++ gk + ++++g      dgt +Rdf++v D+ae++l++l+h ++ ++ ++yn+G
  EHU00154.1 198 NNLLP-YITQVAIGKlPLLKIYGsdystpDGTGVRDFIHVMDLAEGHLAALKHRNKTKNLNVYNLG 262
                 77777.99999999988899999******************************99988889***98 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   1.5e-16   2.7e-13       1     174 [.       3     183 ..       3     187 .. 0.80
   2 ?   -0.0   0.0      0.22   3.9e+02     204     267 ..     237     294 ..     231     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.5e-16
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +l+tG+ G iGs+ v ++++ +   ++l + +  + + i++ le  l+ k+l     +  g+v ++  l++++++++v  v+h A  K V    
       EHU00154.1   3 ILITGGCGYIGSHTVLTLMNADYDVVVLDDFSNSSRHVISR-LE-ALSGKQLV----VYDGSVLNSLLLKEIFTKHNVSDVIHFAGSKSVNESI 90 
                      89*******************99988888888877777776.43.45555553....347********************************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE.......GGGS........S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt.......DKAv........nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlg 173
                      ++pl   ++Nv gt  ++++ ++a+vk++++ S+        K          n tn +G +K++aek+l  +  ++  ++ + ++ R+ N +g
       EHU00154.1  91 KEPLYYYENNVSGTLILLKTMLQANVKNIIFSSSatvygsvEKIPltedcyvgNTTNPYGSSKLIAEKILSDICLSN--QDFNATILRYFNPVG 182
                      *****************************998862233323232122222224789999********9999988877..567778888888766 PP

                      G CS
  Polysacc_synt_2 174 S 174
                      +
       EHU00154.1 183 A 183
                      5 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.22
                      E-HHHHHHHHHHHHHH--SS-EEEE--.-EEEHHHHHHHH..........SSSS-EEE----TT CS
  Polysacc_synt_2 204 mtieeavqLvlqalalakggeifvldmGepvkivdlakalielsgleekkeedieikitGlRpG 267
                      m ++e+    l+  +++k+ +++ l  G  +++++l+ka+ ++s        +i+ +i+  RpG
       EHU00154.1 237 MDLAEGHLAALKHRNKTKNLNVYNLGTGRGYSVLELVKAFENISR------IKIPYEIVSRRPG 294
                      666666666677777788888999999999999999999966664......4677788888887 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.3   3.6e-17   6.5e-14       1     157 [.       4     160 ..       4     176 .. 0.82
   2 ?   -3.7   0.0       2.6   4.6e+03     205     231 ..     223     249 ..     215     257 .. 0.71

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 3.6e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdkleealegvdv..vihlaslvdvagklted.eimkvn 92 
                 ++tGg+G++G++ v +L++++   +v vlD   + s ++ ++l+ +  k+  v  g v++   l+e   + +v  vih a+   v   ++e   +++ n
  EHU00154.1   4 LITGGCGYIGSHTVLTLMNAD--YDVVVLDdfSNSSRHVISRLEALSGKQlvVYDGSVLNSLLLKEIFTKHNVsdVIHFAGSKSVNESIKEPlYYYENN 100
                 69******************9..5999999764555556666666666666689999*********9987666559*********997666516789** PP

   3Beta_HSD  93 vkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklv 157
                 v GT  +l++ ++a+v+ +++ Ssa v g  +++ +++   E+  y  + +++y +sK +aEk++
  EHU00154.1 101 VSGTLILLKTMLQANVKNIIFSSSATVYGS-VEKIPLT---ED-CYVGNTTNPYGSSKLIAEKIL 160
                 *****************************9.5555555...55.55667789**********975 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.6
   3Beta_HSD 205 kigdeevlsdrvYvgNvawahilAara 231
                 ++ d   + d++ v  +a  h+ A ++
  EHU00154.1 223 STPDGTGVRDFIHVMDLAEGHLAALKH 249
                 556666778888888888888877765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   4.4e-10   7.9e-07       2     218 ..       6     200 ..       5     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.4e-10
                    E-TTSHHHHHHHHHHHHHS-.TEEEEEE-.SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   2 TGaTGFLGkvLlekLLrttpevkiyllvR.aksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    TG+ G++G++ +  L++ +    +++l   ++s++++  Rl          +al+    ++++v+ G + ++   L +e + +  ++v+ +ih a+
     EHU00154.1   6 TGGCGYIGSHTVLTLMNADY--DVVVLDDfSNSSRHVISRL----------EALS---GKQLVVYDGSVLNSL--LLKEIFTK--HNVSDVIHFAG 82 
                    66666666666666666655..3444433233333333333..........2222...445566666665554..34455554..499******** PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                    + +++e++ke    ++ Nv Gt  +l+   + + +  +++ S+a+v+g  e +                 +e    ++ +n Y  sK +aEk++ +
     EHU00154.1  83 SKSVNESIKEplyYYENNVSGTLILLKTMLQANVK-NIIFSSSATVYGSVE-K--------------IPLTEDCYVGNTTNPYGSSKLIAEKILSD 162
                    *********9777789***********99988877.9***********999.3..............5788999*********************9 PP

                    HH.HHH---EEEEEE-EEE-........-SSST---TT CS
  NAD_binding_4 190 ar.rrsglpvvivRpsiitg........esktGwings 218
                       ++++++++i+R  + +g        es  G++n+ 
     EHU00154.1 163 IClSNQDFNATILRYFNPVGahesgkigESPRGVPNNL 200
                    763457999*****988777666666666666666665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.7e-09   1.7e-05       1     142 [.       7     176 ..       7     191 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.7e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEE..ETT.....HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SE..EEES---TCCHHHH......... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal..vRn.....peklaeleaeeglevvegdvtdvedlaealkgada..Vvsalggggkdeeg......... 77 
                     G+ G +G++ v  l ++ +++v++l    n      ++l++l + ++l v +g+v+++  l+e ++ +++  V+  +g+++ +e +         
      EHU00154.1   7 GGCGYIGSHTVLTLMNA-DYDVVVLddFSNssrhvISRLEAL-SGKQLVVYDGSVLNSLLLKEIFTKHNVsdVIHFAGSKSVNESIkeplyyyen 99 
                     8899*************.699998744333221122344555.469999****************999755565555555553333555677766 PP

                     ....HHHHHHHHHHCT--EEEEEEETTTTSGCGCH...HHHHHHHCCHHHHHHHHHHHHHHHH.....SSSEEEEEE CS
  NAD_binding_10  78 ....aknivdaakeagvkRfvlvsaigvgdevpge...fgewnkellkaylaakraaeellra.....sgldwTivr 142
                         +  +++ + +a+vk +++ s++ v+ +v++     + ++ ++ ++y   k  ae++l +      +++ Ti+r
      EHU00154.1 100 nvsgTLILLKTMLQANVKNIIFSSSATVYGSVEKIpltEDCYVGNTTNPYGSSKLIAEKILSDiclsnQDFNATILR 176
                     66779999*********************876653111223344566666666666666654444433899999999 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.6e-07   0.00047       2      56 ..       2      57 ..       1     132 [. 0.89

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.6e-07
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE- CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqv 56
                ++l+tG+++ IG  ++ +l++++++vvv+d  ++  ++v++ l+++ g++++++ +
  EHU00154.1  2 AILITGGCGYIGSHTVLTLMNADYDVVVLDDFSNSSRHVISRLEALsGKQLVVYDG 57
                59*******************************************97777666655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.3e-07   0.00042       3     145 ..       3     132 ..       2     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-07
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  litGG+G +G +++ +l++     +vl   s    ++s++ i++leal g +  v++  v ++  +++++++ +     ++ vih Ag      + + 
  EHU00154.1   3 ILITGGCGYIGSHTVLTLMNADYDVVVLDDFS----NSSRHVISRLEALsGKQLVVYDGSVLNSLLLKEIFTKHN-----VSDVIHFAGSKS---V-NE 88 
                 59*****************9988888875555....6678899999998799**********9999999998875.....999*****9754...3.34 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT CS
          KR 101 taedleqvlapKvkGawnLhelledesldffvlfSSiagllgsag 145
                 + ++    ++  v+G+  L +++ + +++ + +fSS a+++gs +
  EHU00154.1  89 SIKEPLYYYENNVSGTLILLKTMLQANVKNI-IFSSSATVYGSVE 132
                 445556788999*************999986.5788899999876 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.9e-07   0.00053       1     138 [.       1     162 [.       1     179 [. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.9e-07
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa 74 
                    m il+tG+ G +Gs+ +  l +++++v+ l+                        +  + ++  ++e++ +++ + v++ A  + v +  +e+   
     EHU00154.1   1 MAILITGGCGYIGSHTVLTLMNADYDVVVLDDFsnssrhvisrlealsgkqlvvyDGSVLNSLLLKEIFTKHNVSDVIHFAGSKSVNESIKEPLYY 96 
                    78****************************6556899*************8887777777888889999*************************** PP

                    HHHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS--.--SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  75 yavnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddet.sPlnvYGrtKlaGEqavla 138
                    y+ n+ ++  l +   +++++ +i+ S+  V+   +k p +ed  + +  n YG +Kl  E+   +
     EHU00154.1  97 YENNVSGTLILLKTMLQANVKnIIFSSSATVYGSVEKIPLTEDCYVgNTTNPYGSSKLIAEKILSD 162
                    ***********9999999985388999999**99999999998776256789*********99876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.7e-05     0.049       1     102 [.       3     124 ..       3     135 .. 0.79
   2 ?    0.3   0.0      0.23   4.1e+02     187     225 ..     240     280 ..     224     303 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
                 EEESSTTSHHHHHHHHHHHHHT-EEEEE..ES-S-SHHHHHHHH.STTEEE..ES-TT-HHHHHHHHTT..-SEEEE---GG.............S-HH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvral..vRdtkselakslke.aGvelv..kgdlddkeslvealkg..vdvvfsvtgfy.............skei 79 
                 Il++G+ G++G++ v  l++a+++v +l    +++++++  l++ +G +lv   g++ +  +l+e++ +  v  v+   g++             ++++
  EHU00154.1   3 ILITGGCGYIGSHTVLTLMNADYDVVVLddFSNSSRHVISRLEAlSGKQLVvyDGSVLNSLLLKEIFTKhnVSDVIHFAGSKsvnesikeplyyyENNV 101
                 89************************9955577799999999874688888677888899999999876234445555555557777888888888888 PP

                 HHHHHHHHHHHHHS-SEEEEEE- CS
        NmrA  80 edgkklvdAakeaGvkhfiySsl 102
                      l +   +a vk++i+Ss 
  EHU00154.1 102 SGTLILLKTMLQANVKNIIFSSS 124
                 88888889999999999999885 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHH.TTEEEE.E-SEEE-HHHHHHHHHHHH CS
        NmrA 187 Gafvikilkdprkl.kgkrik.lagntlsgneivelfekki 225
                 ++  +++lk+++k+ + ++++  +g  +s+ e+v++fe   
  EHU00154.1 240 AEGHLAALKHRNKTkNLNVYNlGTGRGYSVLELVKAFENIS 280
                 55555555555555322222213444555555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2529.63
//
Query:       EHU00155.1  [L=398]
Description: glycosyl transferase group 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-30  106.1   0.3    2.3e-30  105.4   0.3    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    6.4e-21   75.2   0.0    1.1e-20   74.5   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.13   12.7   0.0         31    5.1   0.0    2.5  2  LIAS_N           N-terminal domain of lipoyl synthase of Radi


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.3   3.8e-34   2.3e-30       8     167 ..     218     371 ..     212     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3.8e-34
                      HTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEES CS
  Glycos_transf_1   8 klgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsi 101
                      k  + ++kk++l+vgr++k Kgv  li+a+++      +++k+ i+G+g+++k   +l+e+ +++++v+f+g ++++dl++ +  a ++ + s 
       EHU00155.1 218 KVLL-NQKKLVLFVGRIVKDKGVFELIEAIKS-----FDDFKVRIVGDGPDLKDAIALVEKNNIQHKVEFTGAINNKDLKKHYLDAYVVTMLSK 305
                      4445.699***********************5.....79**********************************************999999999 PP

                      S.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHH CS
  Glycos_transf_1 102 s.EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlge 167
                      + Egf+ v++EA  + +pv ++ +gg++  +++g++ +++ p+++ +++++++ +  d + + +l+e
       EHU00155.1 306 TnEGFPRVIMEAWNYHKPVMSTSVGGVSAFIQNGVNAVVIRPGSISDIINGLKYIN-DTNNYSKLIE 371
                      99************************************************997664.4445666655 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.8e-24   1.1e-20       2     128 ..     225     357 ..     224     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.8e-24
                      EEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs...egfglkl 87 
                      + +lfvGr+++  kgv  l+ea++     d+++ ivGdgp  ++++  l++  +++++veftG +  +dl++++ +a v+ + s   egf+ ++
       EHU00155.1 225 KLVLFVGRIVKD-KGVFELIEAIKSFD--DFKVRIVGDGPdLKDAIA-LVEknNIQHKVEFTGAInnKDLKKHYLDAYVVTMLSktnEGFPRVI 314
                      679******655.**************..79********99666775.665589999********9989********99999999999****** PP

                      HHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHH CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevv..gengllvppgdpealaeai 128
                      +Ea  + +pv +t+vgg+++++  g+n++++ pg+ +++++ +
       EHU00155.1 315 MEAWNYHKPVMSTSVGGVSAFIqnGVNAVVIRPGSISDIINGL 357
                      ******************9999999*******99988887655 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0051        31      76     107 ..     110     141 ..     107     142 .. 0.79
   2 ?    5.0   0.0    0.0052        31      28      79 ..     249     301 ..     223     307 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0051
      LIAS_N  76 wlktkiPlGknynk.ikndlreLnLhtvCeeaR 107
                 w++t  PlG +++  +  + +   Lh vC +aR
  EHU00155.1 110 WARTPSPLGISFSNrVLRKKK-KLLHHVCGDAR 141
                 99**********751444444.459*******9 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0052
      LIAS_N  28 ltdekkelleeGPdlqDFvsgdkedk.seweeykgnlkrekgerlrLPswlkt 79 
                   d k +++ +GPdl+D ++  ++++ ++  e++g ++++  ++  L  ++ t
  EHU00155.1 249 FDDFKVRIVGDGPDLKDAIALVEKNNiQHKVEFTGAINNKDLKKHYLDAYVVT 301
                 4444556889********99776666466778888888777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3165.94
//
Query:       EHU00156.1  [L=423]
Description: hypothetical protein CKS_2272 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1209  (0.0674327); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3211.41
//
Query:       EHU00157.1  [L=276]
Description: putative glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-17   62.9   0.0    5.1e-17   62.2   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    2.4e-08   33.8   0.1      2e-07   30.8   0.1    1.9  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.24   11.3   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   8.5e-21   5.1e-17       2     116 ..      10     125 ..       9     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 8.5e-21
                      EEEEESS-..TTTHHHHHHHHHHHGGCCEEEEEEEEES-.SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE CS
  Glycos_transf_2   2 vviptyNe..ektlletlesllaqdpypdfeiivvDDgS.tDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdep 92 
                      + + +y    +k l +++es++++ + + +ei++v Dg  + ++ e +  +  ++ +++++++++nvG+++alnagl+ ++ ++++  DaDd+ 
       EHU00157.1  10 ILMSVYHQdnYKFLNAAFESIKNN-TLLPDEIVLVEDGPlSKDLTETINHWE-KKLNFKIVKLKKNVGLGKALNAGLELCNNELVIRADADDIN 101
                      778888888899************.*************97777777777775.59*************************************** PP

                      -TTHHHHHHHHHHH.TTCEEEEEE CS
  Glycos_transf_2  93 dpdwleklvealekdgadvvlgqr 116
                         ++e+ v+++ k+++ ++  ++
       EHU00157.1 102 RTTRFERQVDFMFKNPEVGISSAW 125
                      **************9886665554 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   3.4e-11     2e-07      31     239 ..      39     232 ..       9     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.4e-11
  Glyco_tranf_2_2  31 elivvddgS.sekfleevssi.idlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilklitikklrenidaavvlp 122
                      e+++v+dg  s+++ e ++   ++ln ++   +  +k  +l++a N G + ++ +lv+  DaD+   + +fe+++       + +n++  +  +
       EHU00157.1  39 EIVLVEDGPlSKDLTETINHWeKKLNFKIV--KL-KKNVGLGKALNAGLELCNNELVIRADADDINRTTRFERQVD-----FMFKNPEVGISSA 124
                      677888886244444444443123344442..33.4689************************************9.....8999***999777 PP

  Glyco_tranf_2_2 123 vvdlnkedsevlkdvedltassrvledllaak...stlvkffapssssilinrra.flevGGyDErfrGhgaEDfdlllRlakaik...slekm 209
                      ++          ++ e++ ++  + +++ a k   + + k + p    ++i r+  +l+ GGy ++f    +ED+ l ++l+   +   +l++ 
       EHU00157.1 125 WI----------QEFEEMPCDRGFVRKVPA-KeglNHFSKRYCPFNHPAVIFRKSlILRHGGYGNEF---LYEDYALWMKLLHSNVigdNLQEV 204
                      75..........577889999999988877.51224556678888877777666515789*******...8**********9876433388888 PP

  Glyco_tranf_2_2 210 pvellykarakslsnykGfrrflealakea 239
                       v++ + +++ s +   Gf+ fl+++ ++ 
       EHU00157.1 205 LVDMRFTDQTYSRR--GGFKYFLSEIKNQY 232
                      99999999988888..9******9998775 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.24      17     119 ..      23     121 ..       6     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
  Glyco_tranf_2_3  17 lgevlesllaqeyprvevvvvvde.sdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdDtvvePdtlkrll 109
                      l +  es+ +++  ++e+v+v d+  +++  e++ + +++l     ++v  ++n g  gk  aln +l+ ++ +lv+  D+D++   + ++r++
       EHU00157.1  23 LNAAFESIKNNTLLPDEIVLVEDGpLSKDLTETINHWEKKLNF---KIVKLKKNVGL-GK--ALNAGLELCNNELVIRADADDINRTTRFERQV 110
                      5555555556566778888888554777777888888777743...56677888896.77..67****************************** PP

  Glyco_tranf_2_3 110 qff.ltpkvga 119
                       f+ + p+vg+
       EHU00157.1 111 DFMfKNPEVGI 121
                      **988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2037.14
//
Query:       EHU00158.1  [L=308]
Description: family 2 glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-15   57.1   0.1    2.7e-15   56.6   0.1    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    5.3e-07   29.8   0.0    8.5e-07   29.1   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0099   15.8   0.0      0.017   15.0   0.0    1.3  1  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.1   4.5e-19   2.7e-15       1     126 [.       8     138 ..       8     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 4.5e-19
                      EEEEEESS-TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCH....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESS CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq.dpypdfeiivvDDgStDetveileelak....edprvrvirreenvGkagalnaglraatgdyilflDaD 89 
                      +v++ +yN e+t+ et++s+l+q   ++++ +i+ DDgS+D+++ i+ ++ +    ++ +v    + en G  +++n +l  + ++++ ++  D
       EHU00158.1   8 TVIVLSYNSESTIVETFDSILSQsFGPENINLIISDDGSQDKSKLIINKWLEkngeYFNKVVRNFNAENLGIVKNFNSALLLVETEWMKLIAGD 101
                      69*********************999****************************9655555555677888************************ PP

                      EEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCC CS
  Glycos_transf_2  90 depdpdwleklvealekdgadvvlgqrprifgetdei 126
                      d+  p +l    e ++k++++v++ +  ++++ ++e+
       EHU00158.1 102 DILLPHCLAVNHELIKKNNNKVFFSKMKAFKKIDNEN 138
                      ********************99998888777666655 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.4e-10   8.5e-07       4     209 ..       7     219 ..       5     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.4e-10
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqey.pr.vevvvvvdesdaetl...evaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvl 92 
                      ++v+V ++n e++++e+ +s+l+q+  p+ + +++ +d+s+++     +   e   ++ + +v+  +na+nlg+ +k  + n al  v++++  
       EHU00158.1   7 ITVIVLSYNSESTIVETFDSILSQSFgPEnINLIISDDGSQDKSKliiNKWLEKNGEYFN-KVVRNFNAENLGI-VK--NFNSALLLVETEWMK 96 
                      79***********************75668*******99886654234444444455545.4444577899997.55..99************* PP

  Glyco_tranf_2_3  93 lvDdDtvvePdtlkrllqff..ltpkvgavgtpvfll..nrstl..........vsalgalefaerhlrflaarralgvltlnGsgslirrevl 172
                      l+ +D+++ P+ l++   ++  +  kv +   + f +  n++ +          +        +  +++  ++++ ++v++    +++i  +v 
       EHU00158.1  97 LIAGDDILLPHCLAVNHELIkkNNNKVFFSKMKAFKKidNENIYfnelpdkkqqLVL----SQDLKKQQLYLRTENFSVAP----TTFIHMDVI 182
                      ***************999997544566665555555422444443444444332222....23355666777788888887....99******* PP

  Glyco_tranf_2_3 173 kelegldplflltdDyelglrlrragfrtayvpgaav 209
                      +e + ld++  l dDy l++ l   gf   +  +++v
       EHU00158.1 183 REVGYLDENYFLLDDYPLWVKLSLKGFSFNFIDDVTV 219
                      ********88888***************999999886 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.9e-06     0.017      76     121 ..     174     222 ..     161     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-06
  Glyco_trans_2_3  76 gaflrrsalqevggwdgdessvsEDfdmglrlqrkGyrvrfvpes....l 121
                       +f++ ++++evg+ d  + ++ +D+ ++++l  kG+ ++f++++     
       EHU00158.1 174 TTFIHMDVIREVGYLD-ENYFLLDDYPLWVKLSLKGFSFNFIDDVtvlyR 222
                      589*************.779**********************99864333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2280.16
//
Query:       EHU00159.1  [L=417]
Description: WzxB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-13   48.4  23.9    7.8e-13   48.4  23.9    2.3  2  Polysacc_synt    Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
        8.4    6.4  51.0      0.041   13.9  23.0    4.5  6  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4  23.9   8.7e-17   7.8e-13       5     273 ..       8     285 ..       6     286 .. 0.84
   2 ?   -7.0  11.4         2   1.8e+04      85     192 ..     303     411 ..     287     417 .] 0.66

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 8.7e-17
  Polysacc_synt   5 vivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrek.kelvslillnvllvllvlvllflllllia 99 
                    +i+++l +++ ++ ++v+   +a++ gp+g +l+ ++++i+ +l  +++   ++ +vr+ a+++e+ +e  ++++ +    +++l  +++ l ++ 
     EHU00159.1   8 TIFTALLTFLRMGCGLVIGKFVAIYTGPTGLALLGQLQTIANILNGIANAPAGNGIVRYTAEHSESgHENCAYWWRACSRWIIILCGIMIPLVCVT 103
                    688999************************************************************777777777665555666655555555553 PP

  Polysacc_synt 100 a.....flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslavlrk 190
                          +l +    ++y+i+++  l++ +  ++++++++g +  ky +++ ++++l+ +   ++++++ + i +a+ +a+++a + giv +a+  k
     EHU00159.1 104 SpllsyLLIGNKEQYPYIIIIALTLPVAAYGTMIVSILNGYQSYKYYVLTGIISVLISALIMILLTRYLG-IRGALYAASFQAAIIGIVTIALCIK 198
                    355555666666666666666666657777788999***********************88888888888.**********999999998886665 PP

  Polysacc_synt 191 kfr.....prfvils.lklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfsel 273
                    k +     +  +    +k+++++ s+ + +++s l+ +l   i + l++   g ++ G ++a+ +++ a   +++ ++++   P +s++
     EHU00159.1 199 KTWfkivyF--YGQVtTKYMYDIRSYIIMTIASALSMPLALIIIRRLIANNCGWDVTGQWQAVWKISEAYLAVITLALSTYYLPHLSKI 285
                    554357442..3333479*************************************************************9999999997 PP

  == domain 2  score: -7.0 bits;  conditional E-value: 2
  Polysacc_synt  85 llvlvllfllllliaa.flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalv 179
                    + v++ll + ++l  + + +l  ++   ++++++l+ l+g ++ +++ + ++ +     v ++v++ ++++l +i++ +++  ++ + ga  a+l+
     EHU00159.1 303 IPVTMLLSIGMYLCRDnIINLLFDSKFSQARSFFLVQLIGDVIKIASWLIAFPMLARGKVKWFVYSEIIFALNFIFLGGVYIHFYGAHGANYAYLT 398
                    334444444444443355777777777888888888444444444444568888888888999988888888888888888777778888899999 PP

  Polysacc_synt 180 ggivslavlrkkf 192
                    + ++++++++ +f
     EHU00159.1 399 NYVMYFITIFLFF 411
                    9888888888544 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.5       0.8   7.2e+03     104     104 ..      28      28 ..       4      55 .. 0.47
   2 ?    0.3   0.4     0.074   6.6e+02       5      36 ..      93     124 ..      89     125 .. 0.76
   3 ?   13.9  23.0   4.6e-06     0.041       2     102 ..     121     234 ..     120     246 .. 0.79
   4 ?    2.6   3.9     0.014   1.3e+02      59     115 ..     226     282 ..     222     317 .. 0.65
   5 ?    0.9   1.3     0.048   4.3e+02      65     118 ..     271     330 ..     259     354 .. 0.52
   6 ?    6.2   3.9    0.0011       9.8      23      80 ..     357     414 ..     347     416 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.8
  Polysacc_synt_C 104 v 104
                       
       EHU00159.1  28 F 28 
                      1 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.074
  Polysacc_synt_C   5 lalsiiflslstvlssiLqglgrqkialkalv 36 
                        ++i++ +++++l s+L   ++++++ ++++
       EHU00159.1  93 CGIMIPLVCVTSPLLSYLLIGNKEQYPYIIII 124
                      45788899999999888888888888877765 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 4.6e-06
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrllgikl.......... 85 
                      + i+al+++++++ t+  siL+g    k++++  +i++l+  ++ +ll+ ++gi Ga++a  +  +++ ++ + +  +++ +k+          
       EHU00159.1 121 IIIIALTLPVAAYGTMIVSILNGYQSYKYYVLTGIISVLISALIMILLTRYLGIRGALYAASFQAAIIGIVTIALCIKKTWFKIvyfygqvttk 214
                      6799********************************************************************************9888844433 PP

  Polysacc_synt_C  86 ...ellrrllkpllaalvmg 102
                         +++  ++ ++++al m 
       EHU00159.1 215 ymyDIRSYIIMTIASALSMP 234
                      33222222223333333333 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.014
  Polysacc_synt_C  59 aiatvlallvvavlnlyalrrllgikl..ellrrllkpllaalvmgivvylllllllgl 115
                       ia++l++ ++++++ +++ +  g+++  + ++ ++k+  a l++  +++  +++l+ l
       EHU00159.1 226 TIASALSMPLALIIIRRLIANNCGWDVtgQ-WQAVWKISEAYLAVITLAL-STYYLPHL 282
                      699************************964.8888865444444443322.33333333 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.048
  Polysacc_synt_C  65 allvvavln..lyalrrllgikl...ellrrll.kpllaalvmgivvylllllllgllll 118
                      +l+++++++  l  ++  + +k    + ++ ++ +++l++++m+++   + +ll+   ++
       EHU00159.1 271 TLALSTYYLphLSKIKDNVELKKevfSAFKVIIpVTMLLSIGMYLCRDNIINLLFDSKFS 330
                      333333333113444444444446553344444577777777777744444444444443 PP

  == domain 6  score: 6.2 bits;  conditional E-value: 0.0011
  Polysacc_synt_C  23 qglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrl 80 
                       + g++k+++++ +i al  + l  + i+++g+ Ga +a +  ++++++ ++ +  ++
       EHU00159.1 357 LARGKVKWFVYSEIIFALNFIFLGGVYIHFYGAHGANYAYLTNYVMYFITIFLFFDKI 414
                      67899******************************************99998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1117  (0.0623013); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2922.55
//
Query:       EHU00160.1  [L=367]
Description: DegT/DnrJ/EryC1/StrS aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.7e-108  360.8   0.0   9.9e-108  360.7   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    6.2e-09   35.5   0.0    1.3e-08   34.4   0.0    1.5  1  Aminotran_1_2    Aminotransferase class I and II
    4.7e-07   29.1   0.0    8.4e-07   28.3   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.012   16.0   0.2      0.027   14.9   0.2    1.6  1  Chalcone_N       Chalcone isomerase N-terminal domain


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.7   0.0  2.2e-111  9.9e-108       2     360 ..      14     362 ..      13     363 .. 0.95

  Alignments for each domain:
  == domain 1  score: 360.7 bits;  conditional E-value: 2.2e-111
                      HHHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH...TTTT.TT-EEEEESSS-THHHHHHHHTT-EEEEE- CS
  DegT_DnrJ_EryC1   2 ikeeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLra...lgvg.pgdeVIvpsltFvatanavlelgakpvfvD 91 
                      +++e lea+++v+ksg++++g+e ++FE++f+ y+g+k+ai+v++G +Al l++ra   lgv  +gdeVIvp++t++a++ a++ ++++pv+v+
       EHU00160.1  14 YEAELLEAATRVIKSGFYITGDELKAFENNFSSYCGTKYAIGVANGLDALVLVMRAwklLGVInDGDEVIVPANTYIASILAITANNLVPVLVE 107
                      578999**************************************************88877545****************************** PP

                      B-TTTSSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS-EEEE CS
  DegT_DnrJ_EryC1  92 vdpdtynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGeGGavv 184
                       +p+t+n+d++ + + it rtk IlpVhlyGq++ md++ + a+++gl v+eD+A+A+Ga++kg k+G++gda++fSFyp Knl ++G++Ga++
       EHU00160.1 108 PNPETFNLDVEVLSKHITHRTKIILPVHLYGQISPMDEICKFAKEKGLLVLEDSAQAHGASIKGVKAGNFGDAGCFSFYPGKNLgALGDAGAIT 201
                      ********************************************************************************************** PP

                      ESTHHHHHHHHHHHBTTCECCTCSSCECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCE CS
  DegT_DnrJ_EryC1 185 tndeelaekarvlrnhGlkrkaekryvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhly 278
                      tn+ +lae++ +lrn+G++    k+y +    G+n+rl+eiqAA ++++++++d  +++Rr+ia++y++e+++   ++ ++++ e++ h+whl+
       EHU00160.1 202 TNNVDLAETLIALRNYGSH----KKYENLY-QGVNSRLDEIQAAFLNVKIKYIDAEINKRRTIAKRYRSEIKNGL-VTLPQVTSEEN-HVWHLF 288
                      *****************99....7999999.*****************************************944.44555555555.9***** PP

                      EEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 279 avlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                      ++ ++      r+el++ l +++i+t +hyp+p h+q++y+e ++    +lp ++ l+++vls+p+ p  t e+  ++++al
       EHU00160.1 289 VIKTD-----YREELQKWLYRNNIQTLIHYPIPPHKQKAYKEFNNL---NLPITKMLHKNVLSIPIGPTQTLEETSKIIDAL 362
                      *****.....78******************************9755...69****************************997 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.9e-12   1.3e-08      38     323 ..      29     301 ..       5     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.9e-12
                    TST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHH....HTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTE CS
  Aminotran_1_2  38 neygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllk....lnpgdeilvpdptyasyknilrlsggevvryplyseedfh 129
                     +y + d l+++e++  ++ g        ++ a+ v +G +al  + ++++k    +n gde++vp+ ty   + ++ ++ +  v ++  ++e+f+
     EHU00160.1  29 GFYITGDELKAFENNFSSYCG--------TKYAIGVANGLDALVLV-MRAWKllgvINDGDEVIVPANTYIASILAITANNLVPVLVE-PNPETFN 114
                    67999999*************........666*********87655.5555556669**************************99999.569**** PP

                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEES..SST CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgsl..sKa 222
                    ld+e l + ++       +tk+il   p +  G++ + +e++k    ak+++ll++ D a a++++          +v+++   ++ + s+  +K+
     EHU00160.1 115 LDVEVLSKHITH------RTKIIL---PVHLYGQISPMDEICKF---AKEKGLLVLEDSAQAHGASI--------KGVKAGNFgDAGCFSFypGKN 190
                    ************......*****9...89999************...******************96........4444443345666676669** PP

                    TSSGGG-EEEEEEEH..........HHHHHHHHHHHHHTS...SHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHSTEEEECCSC CS
  Aminotran_1_2 223 fGlaGeRvGyilgna..........avvsqlrklsrpfls...ssllqaavaaalsdallkqs.eleemrqrlqkrrkelrdeLaelglkvlasqs 304
                    +G+ G   G+i+ n           +     +k  +   +    s l ++ aa l+ + ++++ e++++r   ++ r e++++L  l  +v+++++
     EHU00160.1 191 LGALG-DAGAITTNNvdlaetlialRNYGSHKKYENL--YqgvNSRLDEIQAAFLNVKIKYIDaEINKRRTIAKRYRSEIKNGLVTL-PQVTSEEN 282
                    *****.8999999777777666633222223344444..245899999999999999999999999999999999999999999443.34555556 PP

                    SSEEEEEETHHCHHHHHHH CS
  Aminotran_1_2 305 gmflltdlsaetakelskk 323
                    ++ +l +++    +el+k 
     EHU00160.1 283 HVWHLFVIKTDYREELQKW 301
                    6666666655545555554 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.9e-10   8.4e-07      69     181 ..      58     166 ..      35     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.9e-10
                  SHHHHHHHHHHHCCCC..-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHH CS
  Aminotran_5  69 Gtteainlvalslars..lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigkl 164
                  ++ +a+ lv+++++    +++gde++v ++ + a ++++  +     + v v p  e+ +ld++ l k+++++tk++   h     G i p++ei+k 
   EHU00160.1  58 NGLDALVLVMRAWKLLgvINDGDEVIVPANTYIASILAIT-A--NNLVPVLVEPNPETFNLDVEVLSKHITHRTKIILPVHL---YGQISPMDEICKF 149
                  556688899999987788******************4443.3..345677777788999******************99995...8************ PP

                  HHHTT-EEEEE-TTTTT CS
  Aminotran_5 165 akkkgalvlvDaaqavg 181
                  ak+kg lvl D+aqa g
   EHU00160.1 150 AKEKGLLVLEDSAQAHG 166
                  **************977 PP

>> Chalcone_N  Chalcone isomerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2     6e-06     0.027      11      36 ..     288     313 ..     282     335 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6e-06
  Chalcone_N  11 dvvkeeyrhklkewlyryhipdsisk 36 
                  v+k +yr++l++wlyr  i+  i  
  EHU00160.1 288 FVIKTDYREELQKWLYRNNIQTLIHY 313
                 589*****************988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2700.37
//
Query:       EHU00161.1  [L=399]
Description: formyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-16   60.3   0.0    4.7e-16   59.1   0.0    1.7  2  Formyl_trans_N   Formyl transferase
    1.5e-09   37.9   0.0    9.7e-05   22.6   0.0    2.7  2  Ank_5            Ankyrin repeats (many copies)
    1.3e-08   35.2   0.0    0.00044   20.8   0.0    3.8  5  Ank_4            Ankyrin repeats (many copies)
      4e-05   24.1   0.1    0.00047   20.7   0.1    2.5  3  Ank_2            Ankyrin repeats (3 copies)
     0.0021   18.4   0.0      0.013   15.9   0.0    2.4  2  Ank_3            Ankyrin repeat
     0.0049   17.1   0.0      0.011   15.9   0.0    1.6  1  Formyl_trans_C   Formyl transferase, C-terminal domain
  ------ inclusion threshold ------
       0.06   13.0   0.2         21    4.9   0.0    3.4  3  N_formyltrans_C  N-formyltransferase dimerization C-terminal 


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.8e-19   4.7e-16      61     178 ..      50     164 ..      20     167 .. 0.84
   2 ?   -3.0   0.0       2.1   5.3e+03      80      91 ..     307     317 ..     271     324 .. 0.65

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.8e-19
                     SCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE CS
  Formyl_trans_N  61 leprsqfeeelaeelkelkadlivlagymkllpkelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkve 155
                      ++++++e  l +++++++a + +   y k++ +e  ++   k+ niH SLLP++kG+ +  + +++G++++Gvt h +d ++DtG+i+ q + +
      EHU00161.1  50 CHEKKLQEISLNDAYRMEGA-IFLSLEYDKIIAPEKFSH--DKVFNIHFSLLPQYKGMYTSAWPILNGEEKSGVTLHCIDSGIDTGDIIDQISFQ 141
                     55667778888899999999.777789*****9996665..567*************************************************** PP

                     --TT--HHHHHHHHHHHHHHHHH CS
  Formyl_trans_N 156 iiaedtkeeleqrvadaehkalv 178
                       +++t+++l+ +   ++ ++++
      EHU00161.1 142 LEENETAKSLYLKYIRFGTELVI 164
                     **********9988877777665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
                     -SEEEEES--S- CS
  Formyl_trans_N  80 adlivlagymkl 91 
                     + +iv+a y+++
      EHU00161.1 307 P-VIVAAYYGRI 317
                     3.6677777665 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.8e-08   9.7e-05      14      52 ..     302     340 ..     297     344 .. 0.86
   2 !   12.5   0.0   5.4e-05      0.14      30      55 ..     355     380 ..     347     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.8e-08
       Ank_5  14 gggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                 + g +p +vAa+yg+ d++++L++ ga++n t+++G t+
  EHU00161.1 302 EQGWSPVIVAAYYGRIDMIEKLVELGANINDTNNNGTTV 340
                 33449999****************************764 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.4e-05
       Ank_5  30 dvvrlLlargadlnltdsrGltaldl 55 
                 + +++L+a gadl l+d++Glt++d+
  EHU00161.1 355 SGFKRLFALGADLSLKDFNGLTVIDY 380
                 568999*******************8 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   4.4e+03      17      37 ..      16      40 ..       5      47 .. 0.57
   2 ?   -2.5   0.0       3.4   8.8e+03      16      30 ..     182     196 ..     175     206 .. 0.68
   3 !   20.3   0.0   2.5e-07   0.00063      11      54 ..     278     323 ..     272     324 .. 0.85
   4 !   20.8   0.0   1.7e-07   0.00044       4      40 ..     307     343 ..     306     352 .. 0.89
   5 ?   -1.7   0.0       1.9   4.8e+03      18      40 ..     358     379 ..     341     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
       Ank_4 17 vrlLlek..gad...inaqdnrsGet 37
                 ++L+++  +++   +  q n++Ge+
  EHU00161.1 16 TEWLINYdkKIEvfvLFNQ-NDQGEN 40
                5677755213443333333.666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.4
       Ank_4  16 lvrlLlekgadinaq 30 
                 + ++ ++++++in+ 
  EHU00161.1 182 AKKSTYYSKKSINYN 196
                 567778888888875 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 2.5e-07
       Ank_4  11 sgrlelvrlLlekgad...inaqdnrsGetalhiAakrgnveilklL 54 
                  +r+ +v+ + ++      in+  n++G+++++ Aa+ g++++++ L
  EHU00161.1 278 LCREGNVKAISNHSNKmiyINEK-NEQGWSPVIVAAYYGRIDMIEKL 323
                 68999999999885445679998.********************987 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.7e-07
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGet.alh 40 
                 +   aa++gr+++++ L+e ga+in + n++G t a++
  EHU00161.1 307 PVIVAAYYGRIDMIEKLVELGANINDT-NNNGTTvAMY 343
                 56789**********************.******5555 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.9
       Ank_4  18 rlLlekgadinaqdnrsGetalh 40 
                 ++L++ gad+    + +G+t ++
  EHU00161.1 358 KRLFALGADLSLK-DFNGLTVID 379
                 6789999998887.766887765 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.3   8.5e+03      10      48 ..      13      22 ..       3      40 .. 0.42
   2 !   20.7   0.1   1.9e-07   0.00047      34      83 .]     279     334 ..     262     343 .. 0.79
   3 ?    0.0   0.0      0.52   1.3e+03       7      41 ..     351     389 ..     345     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
       Ank_2 10 lelvklLlegadpnkngktaLhyAakngnleivklLleh 48
                 ++                              ++L+++
  EHU00161.1 13 ISVT-----------------------------EWLINY 22
                2333.............................555543 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.9e-07
       Ank_2  34 akngnleivklLleh.........adndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 +++g  + vk++ +h          +++g++p ++Aa +g++++++ L+e ga+in ++
  EHU00161.1 279 CREG--N-VKAISNHsnkmiyineKNEQGWSPVIVAAYYGRIDMIEKLVELGANINDTN 334
                 5555..3.566666555566644455889999999999999999999999999999875 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.52
       Ank_2   7 ngnlelvklLl.egadpn.k..ngktaLhyAakngnlei 41 
                 +++++ +k L   gad++ k  ng+t++ y  k++++e+
  EHU00161.1 351 SKDYSGFKRLFaLGADLSlKdfNGLTVIDYLEKGNDRET 389
                 455566788877788888745899999988877777665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.5   1.2e+04      13      25 ..       9      22 ..       4      27 .. 0.63
   2 !   15.9   0.0   5.2e-06     0.013       2      30 ..     304     331 ..     303     332 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.5
       Ank_3 13 gnle..ivkfLlenk 25
                +n++  + ++L++ +
  EHU00161.1  9 NNIAisVTEWLIN-Y 22
                5554236899998.5 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.2e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G++p  +Aa +g++++++ L+e  ga++n
  EHU00161.1 304 GWSPVIVAAYYGRIDMIEKLVE-LGANIN 331
                 99********************.*****9 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.4e-06     0.011       3      77 ..     194     265 ..     192     273 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
                     -GGGGB--TTSBHHHHHHHHHHT-TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEE CS
  Formyl_trans_C   3 kkedgridwnqsaeeihnlvrglspwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgal 77 
                       ++  id nq+ae+i ++vr++s        ++g+   ++  ++++++++++ pG+i+  d++++++ + d  l
      EHU00161.1 194 NYNQLNIDYNQTAEKILQQVRAYSFRDYQLPSVQGSM--VFHGKILDKKTNEK-PGRIIFEDDSQIILSTIDYDL 265
                     567778****************973333333467755..55555666666666.*****9999999999877665 PP

>> N_formyltrans_C  N-formyltransferase dimerization C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.051   1.3e+02       3      20 ..      53      70 ..      52      72 .. 0.90
   2 ?    4.9   0.0    0.0083        21       5      32 ..     195     222 ..     193     223 .. 0.92
   3 ?    1.4   0.0       0.1   2.6e+02       1      24 [.     371     394 ..     371     396 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.051
                     HHHHB--TT-EEEHHHHH CS
  N_formyltrans_C  3 kelceidLdkkvtlrEli 20
                     k+l+ei L+  +++  +i
       EHU00161.1 53 KKLQEISLNDAYRMEGAI 70
                     89***********98776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0083
                      HHB--TT-EEEHHHHHHHHHHT--TT-- CS
  N_formyltrans_C   5 lceidLdkkvtlrElidlLRAltfgpyk 32 
                       ++++ d   t+  ++   RA +f +y+
       EHU00161.1 195 YNQLNIDYNQTAEKILQQVRAYSFRDYQ 222
                      58999*********************96 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
                      HHHHHHB--TT-EEEHHHHHHHHH CS
  N_formyltrans_C   1 DykelceidLdkkvtlrElidlLR 24 
                      D++ l  id  +k + rE ++++ 
       EHU00161.1 371 DFNGLTVIDYLEKGNDRETLNFIK 394
                      99999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2774.73
//
Query:       EHU00162.1  [L=293]
Description: glucose-1-phosphate thymidylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-71  238.5   0.0    9.5e-71  238.3   0.0    1.0  1  NTP_transferase  Nucleotidyl transferase
    5.1e-10   39.9   0.0    6.8e-10   39.5   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
     0.0091   15.8   0.0      0.014   15.2   0.0    1.2  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   0.0   1.6e-74   9.5e-71       1     246 [.       2     238 ..       2     240 .. 0.98

  Alignments for each domain:
  == domain 1  score: 238.3 bits;  conditional E-value: 1.6e-74
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      k++ILaGGsGtRL+PLt  ++k+l+p+++k ++i+++ls l+ +gi+++++++t+e+++++++ l++gs+fg+++++ ++p+++g+A+A+++++
       EHU00162.1   2 KGIILAGGSGTRLYPLTLGVSKQLLPIYDK-PMIYYPLSVLMLAGIKDVLIITTPEDQASFKRILNDGSQFGINLAYKVQPNPDGLAQAFIIGE 94 
                      79****************************.*************************************************************** PP

                      HHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSHCSEECCSEEEEETTHHH CS
  NTP_transferase  95 elledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeakaselassGiYvfnsevll 188
                      e++++++    +lvLg+++++++ ++  +kk +e+++   +t++ ++v +++++Gv+e+d+++r+ +++EKP+++k s++a++G+Y+++++v++
       EHU00162.1  95 EFIANDSV---CLVLGDNIFFGQGFSPKLKKVVENNK--GATVFGYQVMDPERFGVVEFDDHNRALSIEEKPNKPK-SNWAVTGLYFYDNKVID 182
                      ****9995...**************************..9************************************.***************** PP

                      HHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 189 flakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleanekla 246
                      ++ k++ ++ rge eit+i++k+le ++ +++ l ++++ W D+Gt+dsl+ea ++++
       EHU00162.1 183 IA-KKIVPSSRGELEITSINEKYLEMKELHVEQLGRGFA-WLDTGTHDSLIEAGSFVE 238
                      **.77*********************************6.*************98876 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.1e-13   6.8e-10       1     119 [.       3     132 ..       3     155 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.1e-13
                   EEEEEESS-TTT.....TTTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC......HHHHHHTTCTS-EEE-TTSS.-SHHHHHHHHHHHH.S CS
  NTP_transf_3   1 aviLAGGrSsRm.....ggdKallplggkpllervldalraagvdevvvvggde......evlaalarlgvrvvededpg.kgplaslaaalraaad 85 
                   ++iLAGG ++R+     g  K+llp+ +kp++ + l  l  ag+++v++++ +e       +l++  ++g+ +++  +p   g ++++  + + +  
    EHU00162.1   3 GIILAGGSGTRLypltlGVSKQLLPIYDKPMIYYPLSVLMLAGIKDVLIITTPEdqasfkRILNDGSQFGINLAYKVQPNpDGLAQAFIIGEEFI-A 98 
                   79**********8887777*******************************99973444445555778889888888777449************9.7 PP

                   SSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEE CS
  NTP_transf_3  86 adavlvlacDmPlltpelverllaaaaasgadvv 119
                   +d v ++++D +++ + +  +l +  +++++++v
    EHU00162.1  99 NDSVCLVLGDNIFFGQGFSPKLKKVVENNKGATV 132
                   *************999998888888775555443 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.3e-06     0.014       4      65 ..       4      67 ..       1      75 [. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-06
                EEECTTSSCTT...-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG CS
        IspD  4 vipAAGsGkRm...kaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld 65
                +i A GsG+R+     g+ Kq+l + +++++   +++l+    ++ ++++ +++d+  f+ +l d
  EHU00162.1  4 IILAGGSGTRLyplTLGVSKQLLPIYDKPMIYYPLSVLML-AGIKDVLIITTPEDQASFKRILND 67
                899*******733368********************9887.7899999999**999***999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2098.01
//
Query:       EHU00163.1  [L=357]
Description: NAD(P)-binding dTDP-glucose 4,6 dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-98  327.8   0.0    9.9e-98  327.6   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.3e-72  244.1   0.0    1.7e-72  243.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    6.9e-16   58.2   0.0    1.5e-15   57.1   0.0    1.6  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
      7e-15   54.8   0.0    1.2e-14   54.0   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.6e-13   49.7   0.0    3.9e-13   49.2   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
    5.8e-13   48.6   0.0    3.7e-11   42.7   0.0    2.1  1  NAD_binding_4    Male sterility protein
    1.9e-05   24.2   0.1     0.0076   15.7   0.1    2.4  2  adh_short        short chain dehydrogenase
    0.00022   21.2   0.0    0.00048   20.1   0.0    1.5  1  KR               KR domain
  ------ inclusion threshold ------
      0.018   15.3   0.1       0.03   14.6   0.1    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.025   14.9   0.1      0.073   13.4   0.0    1.9  2  Gp_dh_N          Glyceraldehyde 3-phosphate dehydrogenase, NA
      0.045   13.7   0.0      0.076   12.9   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
       0.14   12.3   0.1       0.28   11.3   0.1    1.5  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.6   0.0  6.6e-101   9.9e-98       1     332 []       4     330 ..       4     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 327.6 bits;  conditional E-value: 6.6e-101
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aGfiGs ++++++++ ++   +v+ ++++++g++e+l++    e ++++++ ++D++D+++l+++++++qpd++++LAA+shVd+s++ P+
     EHU00163.1   4 LVTGGAGFIGSAVVRHIINNTQDQ--VVNVDKLTYAGNLESLKEI---ESDQRYTFEQADICDADALKNIFQRHQPDAIMHLAAESHVDRSITGPA 94 
                    9*****************997765..5677888888999998864...45789******************************************* PP

                    HHHHHHTHHHHHHHHHHHHCT........TTSEEEEEEEGGGG-S-.........SSSS.B-TTS-----SHHHHHHHHHHHHHHHHHHHH---EE CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalgle......kkvrfyqaStsEvYGkv.........qevp.qtEttpfyPrsPYaaaKlyadwivvnyreayglfav 176
                    +++++n++Gt++LLea r+++l+      +++rf+++St+EvYG++         +e p +tE+t ++P sPY+a+K+++d++v+++ ++ygl+++
     EHU00163.1  95 TFIQTNIVGTYTLLEATRQYWLKldsvrkQNFRFHHISTDEVYGDLphpddidgsAELPlFTEDTGYEPSSPYSASKASSDHLVRAWCRTYGLPVL 190
                    ********************98666666589**************9555444433366768*********************************** PP

                    EEEE-EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHH CS
  GDP_Man_Dehyd 177 ngilfnhesprrgetfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiew 272
                    +++++n+++p+   +f++++i++++ ++++gk + +++G++d++Rdw++v+D+++a+ ++++ +k        get+++++++e+++l+++ ti+ 
     EHU00163.1 191 ITNCSNNYGPY---HFPEKLIPLVILNALEGK-PLPIYGKGDQIRDWLYVEDHARALLTVVKTGK-------VGETYNIGGHNEKKNLDVVYTICH 275
                    ***********...7****************9.9999*************************999.......7**********************8 PP

                    H............TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 273 egkgeeevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                         +e++ ++ s      ++++ +rpg+++++++d  k+ +eLgWkp+ +fe++++++
     EHU00163.1 276 I---LDEIAPKETSY--SELITYVEDRPGHDRRYAIDSGKIARELGWKPQETFESGIKKT 330
                    6...56766654444..4567789*********************************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   0.0   1.1e-75   1.7e-72       1     241 []       3     259 ..       3     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 1.1e-75
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 ilVtG++GfiGsa+v+++ +++++ v+++d+l++a+n ++l+++      ++ ++d++d++al+++f+++qpda++hlAa+++v++s++ pa fi++n+
  EHU00163.1   3 ILVTGGAGFIGSAVVRHIINNTQDqVVNVDKLTYAGNLESLKEIesdqryTFEQADICDADALKNIFQRHQPDAIMHLAAESHVDRSITGPATFIQTNI 101
                 8*********************999************************************************************************** PP

                 HHHHHHHHHHH..........HHTCTEEEEEEEGGGGTSCSSSS...........BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEES CS
   Epimerase  93 qgtlnlleaar..........kagvkrllflsSsevYGkdaeqp...........keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlf 170
                 +gt++llea r          k++  r++++s++evYG+ ++ p            +e+t    ++p+spY+a+K+ +++lv+a+ ++ygl+++i++++
  EHU00163.1 102 VGTYTLLEATRqywlkldsvrKQNF-RFHHISTDEVYGDLPH-PddidgsaelplFTEDT---GYEPSSPYSASKASSDHLVRAWCRTYGLPVLITNCS 195
                 ***********77777777755555.************8887.33333432222444444...55********************************** PP

                 EEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 171 nlyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 n+yGp+   ++++++ip +i ++legk ++ ++g+g++ Rd+lyveD+a+a+l+v++    g+ ge+yniG
  EHU00163.1 196 NNYGPY---HFPEKLIPLVILNALEGK-PLPIYGKGDQIRDWLYVEDHARALLTVVKT---GKVGETYNIG 259
                 ******...99****************.******************************...999******9 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0     1e-18   1.5e-15       1     118 [.       3     114 ..       3     134 .. 0.88
   2 ?   -2.7   0.0       1.7   2.6e+03     180     226 ..     209     256 ..     206     291 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1e-18
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +lvtG++G iGs++vr+i++++  +++ +++  ++  ++e+ l+e  +++++++e     +d+ d++ l+++++++++d+++h AA  hV    
       EHU00163.1   3 ILVTGGAGFIGSAVVRHIINNTQDQVVNVDKLTYAG-NLES-LKEIESDQRYTFE----QADICDADALKNIFQRHQPDAIMHLAAESHVDRSI 90 
                      89***********************99999876643.3333.3344455667666....89********************************* PP

                      HSHHHHHHHHHHHHHHHHHHHHHT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaiea 118
                      + p+  i+tN++gt +++ea+ ++
       EHU00163.1  91 TGPATFIQTNIVGTYTLLEATRQY 114
                      *******************99876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                      HHHHHHHHTTSSEEES.-TT-EEEEE-HHHHHHHHHHHHHH--SS-EE CS
  Polysacc_synt_2 180 plFkkqikeggpvtvT.dpemtRyfmtieeavqLvlqalalakggeif 226
                      pl      eg+p+++    + +R ++ +e+ ++ +l+ ++++k ge +
       EHU00163.1 209 PLVILNALEGKPLPIYgKGDQIRDWLYVEDHARALLTVVKTGKVGETY 256
                      555555566777777513467788888888888888888888888776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   7.9e-18   1.2e-14       1     226 [.       4     244 ..       4     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 7.9e-18
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk...viegDvtdkdkleealegv..dvvihlaslvdvag.kltedeimkvnv 93 
                 +vtGgaGF+G+a+v+++++  +  +v  +D+ +    le+l++++ ++   + ++D++d+d l++  +    d+++hla+ + v    +   ++ + n+
  EHU00163.1   4 LVTGGAGFIGSAVVRHIINNTQ-DQVVNVDKLTYAGNLESLKEIESDQrytFEQADICDADALKNIFQRHqpDAIMHLAAESHVDRsITGPATFIQTNI 101
                 69*****************996.778888877777777888888777776699*************9864338***********9845668899***** PP

   3Beta_HSD  94 kGTrnvleacvka.....gvrv....lvYtSsaevvgpnslgeeilngdEeleyesl.....hqdaypesKalaEklvlkaNgrtlkngg.rlyTcaLR 177
                  GT ++lea ++      +vr+    + + S+ ev g+  + ++i  g  el++++      ++++y+ sKa +++lv +        g   l+T +  
  EHU00163.1 102 VGTYTLLEATRQYwlkldSVRKqnfrFHHISTDEVYGDLPHPDDID-GSAELPLFTEdtgyePSSPYSASKASSDHLVRAWCR---TYGLpVLITNC-- 194
                 **********98533333676433337789********99999998.77777766554677799**************87666...33434788877.. PP

   3Beta_HSD 178 pagiyGegd..kllvpllkqlaklglalfkigdeevlsdrvYvgNvawahi 226
                  +  yG+++  ++l pl+   a  g+ l  +g+ +++ d+ Yv+  a a +
  EHU00163.1 195 -SNNYGPYHfpEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALL 244
                 .5567776543567777777777788******************9888765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.6e-16   3.9e-13       1     222 [.       1     268 [.       1     331 [. 0.79

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2.6e-16
                    EEEEEESTTSHHHHHHHHHCTT.TSEEEEEE-TT.....................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlae.eglevlaltre.....................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa 74 
                    mkilvtG+ G +Gs++++ + +  + +v+ +++                      ++d+ da+a++++++ ++pd+++++AA   vD+  + ++  
     EHU00163.1   1 MKILVTGGAGFIGSAVVRHIINnTQDQVVNVDKLtyagnleslkeiesdqrytfeQADICDADALKNIFQRHQPDAIMHLAAESHVDRSITGPATF 96 
                    89*************9887655255578888777999*********************************************************** PP

                    HHHHTHHHHHHHHHHHHC..........T-EEEEEEEGGGS.........-S-TTS-.B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEE CS
  RmlD_sub_bind  75 yavnaeavealAeaaaav..........galLihvStDyVF.........dGekkrp.YeeddetsPlnvYGrtKlaGEqavla....agkkaliv 146
                     + n  ++ +l ea++++          +  + h+StD V+         dG+++ p ++ed   +P + Y ++K+   + v+a    +g  +li 
     EHU00163.1  97 IQTNIVGTYTLLEATRQYwlkldsvrkqNFRFHHISTDEVYgdlphpddiDGSAELPlFTEDTGYEPSSPYSASKASSDHLVRAwcrtYGLPVLIT 192
                    *************99865222222222267789*******954444444455588888*************************9554445567888 PP

                    EE-SEESS..SSS-HHHHHHHHHHH-SEEEEE..SS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHH CS
  RmlD_sub_bind 147 Rtswvyge..kgknfvktmlrlakereelkvv..aDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswle 222
                      s  yg     + ++  ++  a e ++l +    Dq++   +++d A++ll+++++ +      ++y +++++e   l+
     EHU00163.1 193 NCSNNYGPyhFPEKLIPLVILNALEGKPLPIYgkGDQIRDWLYVEDHARALLTVVKTGKV----GETYNIGGHNEKKNLD 268
                    888888873334555555555567777777753269999999999999999999888775....6666666666655555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.5e-14   3.7e-11       1     207 [.       5     198 ..       5     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.5e-14
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+ GF+G+ +++ ++++t++ +++            ++l+ +    +l++ ++    +r ++ ++D+++ +  L+ + +q+   + d+i+h aA
     EHU00163.1   5 VTGGAGFIGSAVVRHIINNTQD-QVVN----------VDKLTYAGNLESLKEIES---DQRYTFEQADICDAD-ALK-NIFQRH--QPDAIMHLAA 82 
                    7****************99996.3332..........233433333344444443...678888888988887.343.455555..89******** PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHT........SSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelak........klkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKa 181
                      ++d+++     ++++N+ Gt  +le  +         +k++  ++h+ST  v+g+  +   +++      + +l   +++++ + +  Y+ sKa
     EHU00163.1  83 ESHVDRSITGpatFIQTNIVGTYTLLEATRqywlkldsVRKQNFRFHHISTDEVYGDLPHP--DDID----GSAELPLFTEDTGYEPSSPYSASKA 172
                    ******98643349*************999999999865667789******7666666633..2222....3566888899999999********* PP

                    HHHHHHHHHHHHH---EEEEEE-EEE CS
  NAD_binding_4 182 laEklvrearrrsglpvvivRpsiit 207
                     +++lvr++ r  glpv+i  +s+ +
     EHU00163.1 173 SSDHLVRAWCRTYGLPVLITNCSNNY 198
                    *******************9999755 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.1e-06    0.0076       3      70 ..       3      71 ..       1     119 [. 0.87
   2 !    6.2   0.0    0.0042       6.2     142     167 ..     160     185 ..     156     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.1e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakalaiqvDvtdreevealvek 70
                +lvtG+++ IG a++++++++  + vv vd+     +  +++lke    +++++ q+D+ d++++++++++
  EHU00163.1  3 ILVTGGAGFIGSAVVRHIINNTQDQVVnVDKLTY--AGNLESLKEIesDQRYTFEQADICDADALKNIFQR 71
                8******************998887775776644..446666666665688***************99986 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0042
                 B-TTBHHHHHHHHHHHHHHHHHHHHH CS
   adh_short 142 pvagvaaYsAsKaavagltrslakel 167
                 +++  ++YsAsKa  ++l+r++ + +
  EHU00163.1 160 GYEPSSPYSASKASSDHLVRAWCRTY 185
                 5667799*************998766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.2e-07   0.00048       4      78 ..       4      75 ..       2      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.2e-07
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHH CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikae 78
                l+tGG+G +G +++r+++++ + ++v + +   + + + + ++e+e+ + + ++ +aD+ d+da+++++++ + +
  EHU00163.1  4 LVTGGAGFIGSAVVRHIINNTQDQVVNVDKL--TYAGNLESLKEIES-DQRYTFEQADICDADALKNIFQRHQPD 75
                9***************************999..55666677888887.678999**************9987644 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1     2e-05      0.03       3      78 ..       5      82 ..       3      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                     EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHH..HHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SS CS
  Sacchrp_dh_NADP  3 iiGa.GsvGqavaellarhfdvdaeitvadrskek..lealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsp 78
                     + G+ G++G+av++ + ++ +   +++ +d+      le l++ ++ +r ++++ d+ + +a L+ + + +  d++++l+ 
       EHU00163.1  5 VTGGaGFIGSAVVRHIINNTQD--QVVNVDKLTYAgnLESLKEIESDQRYTFEQADICDADA-LKNIFQRHqpDAIMHLAA 82
                     55555**************998..888888744430033333333999**************.****99999999999986 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-05     0.073       6      49 ..       7      50 ..       1      79 [. 0.84
   2 ?   -3.1   0.0       6.7     1e+04      38      50 ..     111     123 ..     101     140 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
                ESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHHHHHHHHEETTT CS
     Gp_dh_N  6 nGfGRIGrlvlralleekelevvaindltdletlayllkyDsvh 49
                 G G IG  v+r+++++++ +vv++ +lt + +l++l + +s +
  EHU00163.1  7 GGAGFIGSAVVRHIINNTQDQVVNVDKLTYAGNLESLKEIESDQ 50
                479*************************9999999998887755 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.7
                 HHHHHHHEETTTE CS
     Gp_dh_N  38 tlayllkyDsvhg 50 
                 t +y lk Dsv +
  EHU00163.1 111 TRQYWLKLDSVRK 123
                 5677888888754 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.1e-05     0.076       1      74 [.       7      87 ..       7     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.1e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEE.....ETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-..SEEEES---TCCH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtal.....vRnpeklaeleaeeglevvegdvtdvedlaealkga..daVvsalggggkd 74
                    G+ G +G+++v++++++++ +v+ +     + n e+l+e+e++++ +  ++d+ d+++l++ ++ +  da++  ++ ++ d
      EHU00163.1  7 GGAGFIGSAVVRHIINNTQDQVVNVdkltyAGNLESLKEIESDQRYTFEQADICDADALKNIFQRHqpDAIMHLAAESHVD 87
                    999**************95565433111226789*****************************977345776665555444 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00019      0.28       1      69 [.       1      67 [.       1      69 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                EEEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE.SSGGGGTT CS
     Ldh_1_N  1 vkvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse.keeealkd 69
                +k+ v+G aG+iG+++   + n+   +   +++++k    G+   l++i+       +  + ++ +alk+
  EHU00163.1  1 MKILVTGGAGFIGSAVVRHIINNTQDQ---VVNVDKLTYAGNLESLKEIESDQRYTFEQADiCDADALKN 67
                69*****************99986555...6777777899999999999887776666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.31s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2504.77
//
Query:       EHU00164.1  [L=71]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-36  125.1   0.4    2.3e-36  125.0   0.4    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.4   1.3e-40   2.3e-36      61     131 .]       1      71 []       1      71 [] 0.99

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 1.3e-40
  DDE_Tnp_IS1  61 iltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  ++tsddwg+y re++kdkhl++ki+tqriernnltlrtr+krlark+++fs+s+e+hekvig ++e++m++
   EHU00164.1   1 MITSDDWGSYAREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSIEIHEKVIGAFIERHMFY 71 
                  789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 599.20
//
Query:       EHU00165.1  [L=33]
Description: hypothetical protein CKS_2262 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-18   65.3   1.0    2.8e-18   65.2   1.0    1.0  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.035   13.5   0.0    1.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.0   4.7e-22   2.8e-18      17      46 .]       1      30 [.       1      30 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.7e-22
  HTH_Tnp_IS1 17 mAfNGaGvraTARtlkvGiNTviRtLKnSr 46
                 mAfNGaGvr+TARtlk+GiNTviR LK+Sr
   EHU00165.1  1 MAFNGAGVRDTARTLKIGINTVIRALKSSR 30
                 9****************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06     0.035      28      49 ..       6      27 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  + v++ Ar l ++ +TV+r+l+
    EHU00165.1  6 AGVRDTARTLKIGINTVIRALK 27
                  5589****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      16      40 ..       4      28 ..       1      33 [] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkr 40
                +G+ vr+ Ar L +  +Tv r lk 
  EHU00165.1  4 NGAGVRDTARTLKIGINTVIRALKS 28
                58899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 321.88
//
Query:       EHU00166.1  [L=61]
Description: undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 531.87
//
Query:       EHU00167.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00167.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00167.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00167.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00167.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00167.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00167.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00167.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00167.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00167.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00167.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00167.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00167.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00167.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00167.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00167.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00167.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00167.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2688.50
//
Query:       EHU00168.1  [L=229]
Description: undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-27   96.7  21.7    1.3e-27   96.7  21.7    1.4  2  Glycos_transf_4  Glycosyl transferase family 4
  ------ inclusion threshold ------
       0.13   11.9   0.5       0.35   10.6   0.1    1.8  2  TRAM1            TRAM1-like protein


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.53   4.8e+03      47      47 ..      22      22 ..       3      60 .. 0.46
   2 !   96.7  21.7   1.5e-31   1.3e-27       3     157 ..      69     226 ..      67     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.53
  Glycos_transf_4 47 l 47
                     +
       EHU00168.1 22 A 22
                     1 PP

  == domain 2  score: 96.7 bits;  conditional E-value: 1.5e-31
  Glycos_transf_4   3 lllltillilllGflDDvlglkarlKlilqilaalililtldlslttlgllltqvlielglilavlltllvivgvtNavNliDGldGlaagvsi 96 
                      +++++++++l++G+lDD ++l ++ ++i+q+l+  i+++ ++  l tlg++l+   i lg ++ +++tl++++g++Na+N++DG+dGl +++s 
       EHU00168.1  69 IYMFCASVLLVIGVLDDRFDLPVMPRIIIQALMGGIMMWHGH-YLYTLGNVLFGYEIVLG-MFGYVVTLFAVIGAINAFNMVDGIDGLLGALSC 160
                      57889999****************************988777.999999999999*****.9999***************************** PP

  Glycos_transf_4  97 iialalvvlaavdgrsellllalallgallGfllfNryp.....AkvFmGDsgslflGlvlavlai 157
                      +++ al++++a+ ++s+l+l +++l++a+l ++l N         kvFmGD+gs+++G+++ +l +
       EHU00168.1 161 VTFGALGIVFALGNNSHLALWCTCLMAACLPYILLNLGIhwgkkFKVFMGDAGSTLIGFTVIWLLM 226
                      ************************************766455556**************9988765 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   3.9e-05      0.35      37      60 ..       4      27 ..       3      30 .. 0.94
   2 ?   -2.6   0.0      0.52   4.6e+03      38      59 ..     181     202 ..     178     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.9e-05
       TRAM1 37 ivftflRaflmeyvlrPlarrlgi 60
                iv++fl af+  +v r++ar+ g+
  EHU00168.1  4 IVCVFLSAFVLLFVARKIARKIGL 27
                89*******************998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.52
       TRAM1  38 vftflRaflmeyvlrPlarrlg 59 
                  +t l a++  y+l  l  ++g
  EHU00168.1 181 WCTCLMAACLPYILLNLGIHWG 202
                 6788888899999877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1691.91
//
Query:       EHU00169.1  [L=337]
Description: UDP-glucose-4-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-60  202.9   0.0    6.2e-60  202.7   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.7e-58  197.5   0.0    4.7e-58  197.2   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.9e-18   65.4   0.0    5.5e-18   64.9   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.6e-16   58.8   0.0    3.1e-15   56.1   0.0    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      3e-12   46.2   0.0    4.5e-12   45.7   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
      3e-08   33.5   0.0    2.1e-05   24.2   0.0    2.2  2  NmrA             NmrA-like family
    5.6e-08   32.9   0.0    8.6e-08   32.3   0.0    1.2  1  KR               KR domain
    1.2e-07   31.4   0.1      4e-07   29.7   0.1    1.8  2  adh_short        short chain dehydrogenase
    4.8e-07   29.8   0.0      8e-07   29.1   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
    1.3e-05   24.5   0.1    0.00014   21.1   0.1    2.1  1  NAD_binding_4    Male sterility protein
  ------ inclusion threshold ------
      0.025   14.9   0.1      0.042   14.1   0.1    1.4  1  TrkA_N           TrkA-N domain
      0.069   12.7   0.0       0.13   11.8   0.1    1.5  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
       0.07   12.7   0.1       0.13   11.8   0.1    1.5  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.0   4.5e-63   6.2e-60       1     241 []       3     262 ..       3     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: 202.7 bits;  conditional E-value: 4.5e-63
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 ilVtG++G+iGs++v alle+g +v++ld+l +as++a ++         +++e+d++dr++l++lf+++ + avih+Aa + v++s   p +++e+n+
  EHU00169.1   3 ILVTGGAGYIGSHTVLALLERGDDVVVLDNLCNASREAINRVEklagkkaTFIEGDVLDRACLRDLFASHCISAVIHFAALKAVGESTRMPLEYYENNV 101
                 8********************************999988877799****************************************************** PP

                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTST CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.......ngegev 182
                 +gt+ lle++r agv +++f sS++vYG++a++p  ett   p+  ++spY+ +Kl++e +++++a++  ++++i+lr+fn +G++       ++ g +
  EHU00169.1 102 AGTVVLLEEMRNAGVWNFIFSSSATVYGANAPVPYVETT---PIgGTTSPYGTSKLMVEFIIRDFAKAEpKFKTIALRYFNPVGAHesgeigeDPSGIP 197
                 **********************************99999...***********************************************9997777779 PP

                 TSHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 183 srvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 ++++p +i++++ g+ +++ ++g      dgt lRd+++v D+ae++l +l+h d+ +  ++yn+G
  EHU00169.1 198 NNLLP-YIAQVAIGRlDKLGVFGgdydtpDGTCLRDYIHVVDLAEGHLKALDHLDKIEGYKAYNLG 262
                 99999.7888888888************************************************98 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   0.0   3.4e-61   4.7e-58       1     332 []       4     325 ..       4     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 197.2 bits;  conditional E-value: 3.4e-61
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS..-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsss..fntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfek 94 
                    L+TG+aG+iGs+++  Lle+g +v+++++++++   +++r+e+la        ++ ++++gD+ D++ l++l+a++ + +v+++AA ++V++s  +
     EHU00169.1   4 LVTGGAGYIGSHTVLALLERGDDVVVLDNLCNAsrEAINRVEKLAG-------KKATFIEGDVLDRACLRDLFASHCISAVIHFAALKAVGESTRM 92 
                    9***************************977650044555555553.......5689*************************************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS---.--SHHHHHHHHHHHHHHHHHHHH-.--EEEEEE-E....EE CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfy.PrsPYaaaKlyadwivvnyreayg.lfavngilfn....he 184
                    P +++e+nv Gt+ LLe +r++g+     f+++S+++vYG  + vp+ Ettp+   +sPY+ +Kl+ ++i++++ +a   + ++  ++fn    he
     EHU00169.1  93 PLEYYENNVAGTVVLLEEMRNAGV---WNFIFSSSATVYGANAPVPYVETTPIGgTTSPYGTSKLMVEFIIRDFAKAEPkFKTIALRYFNpvgaHE 185
                    **********************98...58***********************97379******************99762678889********** PP

                    STTS-TT..SCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EE..E-TT-EEECHHCHHCCHHCCCHHHHHH.. CS
  GDP_Man_Dehyd 185 sprrget..fvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyv..iatgethsvrefvelaflelgktiewegk 275
                    s   ge+   + +++ +++a++a g+ ++l + G  + + d +  +Dy+++++l+  + k+ d++  i+  + +++++    ++le+ k  e    
     EHU00169.1 186 SGEIGEDpsGIPNNLLPYIAQVAIGRLDKLGVfGGDYDTPDGTCLRDYIHVVDLAEGHLKALDHLdkIEGYKAYNLGGGKGFSVLEMIKAFE---- 277
                    **9999655899**************999987698999**************9966666665554335556666666666666666655322.... PP

                    ..........TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 276 geeevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                            k+sgk  ++++ k++r+g+  + ++das a++eL+W+ + +++ ++r++
     EHU00169.1 278 --------KASGK-PIPYEIKPRRDGDLPAFWADASLANRELDWRVTRGIDAMMRDT 325
                    ........34555.79*************************************9986 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0     4e-21   5.5e-18       1     177 [.       4     176 ..       4     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 4e-21
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdklee..alegvdvvihlaslvdvag.kltedeimkvn 92 
                 +vtGgaG++G++ v +L+++++  +v vlD   + s e  ++++k+  kk  +iegDv+d ++l++  a + +++vih a+l  v   +    e+++ n
  EHU00169.1   4 LVTGGAGYIGSHTVLALLERGD--DVVVLDnlCNASREAINRVEKLAGKKatFIEGDVLDRACLRDlfASHCISAVIHFAALKAVGEsTRMPLEYYENN 100
                 69*******************6..******8878888899999999887778*************944556689***********984555679***** PP

   3Beta_HSD  93 vkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlkngg.rlyTcaLR 177
                 v GT  +le  ++agv  +++ Ssa v g n     +    E++++  + +++y +sK + E ++           + ++ T+aLR
  EHU00169.1 101 VAGTVVLLEEMRNAGVWNFIFSSSATVYGANAP---VP-YVETTPIGGT-TSPYGTSKLMVEFIIRDFAK-----AEpKFKTIALR 176
                 *****************************9543...33.3367777655.57888888888877765444.....22277777777 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   2.3e-18   3.1e-15       1     173 [.       3     182 ..       3     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.3e-18
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +lvtG++G iGs+ v  +l++    ++l +    +  +i++    +l+ kk +     + gdv d++ l++++ ++ + +v+h AAlK V    
       EHU00169.1   3 ILVTGGAGYIGSHTVLALLERGDDVVVLDNLCNASREAINRVE--KLAGKKAT----FIEGDVLDRACLRDLFASHCISAVIHFAALKAVGEST 90 
                      89******************99888888777888888887764..34443442....357********************************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGG...GSS-............-SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStDK...AvnP............tnvmGatKrlaekllqalakeseekktkfvvvRfGNVlg 173
                      + ple  ++Nv gt  ++e   +agv ++++ S+     A  P            t+ +G++K++ e ++  +ak +   k k ++ R+ N +g
       EHU00169.1  91 RMPLEYYENNVAGTVVLLEEMRNAGVWNFIFSSSATvygANAPvpyvettpiggtTSPYGTSKLMVEFIIRDFAKAE--PKFKTIALRYFNPVG 182
                      ******************************99976422222221122222233334668888888888888888777..566777778777666 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   3.3e-15   4.5e-12       1     138 [.       1     162 [.       1     174 [. 0.94

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.3e-15
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa 74 
                    m ilvtG+ G +Gs+ + +l e+g +v+ l++                       e d+ d++ +++l++++  ++v++ AA +av +    + + 
     EHU00169.1   1 MAILVTGGAGYIGSHTVLALLERGDDVVVLDNLcnasreainrveklagkkatfiEGDVLDRACLRDLFASHCISAVIHFAALKAVGESTRMPLEY 96 
                    78***************************98878999*********************************************************** PP

                    HHHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----.SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  75 yavnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsP.lnvYGrtKlaGEqavla 138
                    y+ n+ ++  l e+ +++g++ +i+ S+  V+ ++++ pY e+ + +   + YG +Kl  E  +++
     EHU00169.1  97 YENNVAGTVVLLEEMRNAGVWnFIFSSSATVYGANAPVPYVETTPIGGtTSPYGTSKLMVEFIIRD 162
                    *******************9769********************998761567*********99997 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.5e-08   2.1e-05       1     103 [.       3     125 ..       3     138 .. 0.81
   2 !    7.3   0.0    0.0022       3.1     180     232 ..     230     287 ..     197     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.5e-08
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG................S- CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy................sk 77 
                 Ilv+G++G++G++ v all++g +v +l   +        +++++l+ + +++++gd+ d++ l+ ++   + + +v+ f+                ++
  EHU00169.1   3 ILVTGGAGYIGSHTVLALLERGDDVVVLDN-LcnasreAINRVEKLAGKKATFIEGDVLDRACLRDLFAS-HCISAVIHFAalkavgestrmpleyyEN 99 
                 9************************98843.2355555556788999999****************9975.3333333333444779999999999999 PP

                 HHHHHHHHHHHHHHHS-SEEEEEE-- CS
        NmrA  78 eiedgkklvdAakeaGvkhfiySslg 103
                 +++  + l +   +aGv +fi+Ss +
  EHU00169.1 100 NVAGTVVLLEEMRNAGVWNFIFSSSA 125
                 999999*****************965 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
                 E...-HHHHHHHHHHHHHHHHHHH.TTEEEEE-.SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 180 l...daeeDiGafvikilkdprkl.kgkrikla.gntlsgneivelfekkigktvkYt 232
                 l   +++ D ++  +k+l++ +k+   k+++l  g+  s+ e++++fek+ gk++ Y+
  EHU00169.1 230 LrdyIHVVDLAEGHLKALDHLDKIeGYKAYNLGgGKGFSVLEMIKAFEKASGKPIPYE 287
                 44445778999999999999999976677777615679*****************996 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   6.2e-11   8.6e-08       3     149 ..       3     136 ..       2     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 6.2e-11
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  l+tGG+G +G +++  l+e+g   +vl   +    ++s++ i+++e+l g + ++++ Dv d++ ++ l+++       i+ vih A + + +  ++m
  EHU00169.1   3 ILVTGGAGYIGSHTVLALLERGDDVVVLDNLC----NASREAINRVEKLaGKKATFIEGDVLDRACLRDLFASHC-----ISAVIHFAALKAVGESTRM 92 
                 59**********************99998888....3445556666665578899****************9987.....**********999999999 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHH CS
          KR 101 taedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanY 149
                   e +e+     v+G+ +L e +++  +  f+ fSS a+++g++  + Y
  EHU00169.1  93 PLEYYEN----NVAGTVVLLEEMRNAGVWNFI-FSSSATVYGANAPVPY 136
                 9987776....578999999999987776665.7888999999887777 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   2.9e-10     4e-07       2      69 ..       2      70 ..       1     105 [. 0.94
   2 ?   -1.3   0.0       0.9   1.2e+03     146     166 ..     146     166 ..     143     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.9e-10
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealve 69
                ++lvtG+++ IG  ++ +l+++G +vvv+d+  ++ +e+++ ++++ g+ka++i++Dv dr+ +++l++
  EHU00169.1  2 AILVTGGAGYIGSHTVLALLERGDDVVVLDNLCNASREAINRVEKLaGKKATFIEGDVLDRACLRDLFA 70
                59***********************************************************99988876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.9
                 BHHHHHHHHHHHHHHHHHHHH CS
   adh_short 146 vaaYsAsKaavagltrslake 166
                 +++Y++sK  v+ ++r +ak 
  EHU00169.1 146 TSPYGTSKLMVEFIIRDFAKA 166
                 689******999999988875 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.8e-10     8e-07       1     107 [.       7     132 ..       7     162 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.8e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEE..ETT..HHHCHHHH..CTTTCEEEE--TT-CCHHHHHHTT-..SEEEES-..--TCCHHHH........ CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtal..vRn..peklaele..aeeglevvegdvtdvedlaealkga..daVvsal..ggggkdeeg........ 77 
                     G+ G +G++ v  ll+rg  +v++l    n   e ++++e  a ++++ +egdv+d + l++ ++ +  +aV+  +   + g+ +++        
      EHU00169.1   7 GGAGYIGSHTVLALLERG-DDVVVLdnLCNasREAINRVEklAGKKATFIEGDVLDRACLRDLFASHciSAVIHFAalKAVGESTRMpleyyenn 100
                     999**************7.56655423223223444444433469*******************9884458854442433333222244445555 PP

                     ...HHHHHHHHHHCT--EEEEEEETTTTSGCGC CS
  NAD_binding_10  78 ...aknivdaakeagvkRfvlvsaigvgdevpg 107
                        ++ +++ +++agv  f++ s++ v+  ++ 
      EHU00169.1 101 vagTVVLLEEMRNAGVWNFIFSSSATVYG-ANA 132
                     6779999*******************995.333 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     1e-07   0.00014       1     192 [.       5     165 ..       5     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1e-07
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEE.E-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHH..HHH--EEEE CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyll.vRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqel..aeevdviih 93 
                    +TG+ G++G++ +  LL++ ++v  ++l   ++ +++a +R+          ++l   + ++ +++eGD+ +         l++l  ++ ++++ih
     EHU00169.1   5 VTGGAGYIGSHTVLALLERGDDV--VVLdNLCNASREAINRV----------EKL---AGKKATFIEGDVLDRA------CLRDLfaSHCISAVIH 79 
                    7******************9974..44413345455688888..........333...3778899****96544......44444334569***** PP

                    --SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHH CS
  NAD_binding_4  94 saAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEkl 186
                     aA   + e+++     ++ Nv Gt+ +le  ++      +++ S+a+v+g++                 +   e +  +g +  Y  sK + E +
     EHU00169.1  80 FAALKAVGESTRMpleYYENNVAGTVVLLEEMRNAGVW-NFIFSSSATVYGANA-P--------------VPYVETTPIGGTTSPYGTSKLMVEFI 159
                    ****9999988864448899*********988877777.9************99.4..............45678899999*************** PP

                    HHHHHH CS
  NAD_binding_4 187 vrearr 192
                    +r+ ++
     EHU00169.1 160 IRDFAK 165
                    *98875 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.1e-05     0.042       5      65 ..       8      75 ..       3     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
                S-SHHHHHHHHHHHHTTEEEEEEESSH.......HHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESE CS
      TrkA_N  5 GlGrvGrslaeeLseggkdvvvidkde.......erveelreeglevvvgdatdeevLeeagiekada 65
                G+G +G++ +  L e+g+dvvv d+         +rve+l+ ++++++ gd+ d++ L+++ ++++ +
  EHU00169.1  8 GAGYIGSHTVLALLERGDDVVVLDNLCnasreaiNRVEKLAGKKATFIEGDVLDRACLRDLFASHCIS 75
                89*************8879*****85422333335689999999**************9987777654 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.3e-05      0.13       6      62 ..      12      71 ..       7     114 .. 0.86
   2 ?   -3.3   0.0       3.9   5.4e+03     137     157 ..     145     165 ..     135     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.3e-05
                  HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHH CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealvee 62
                  IG +++ al e+G +vv+ d   +a +++++++++  g+++  +e DV d++ +++l++ 
    EHU00169.1 12 IGSHTVLALLERGDDVVVLDNLCNAsREAINRVEKLAGKKAtfIEGDVLDRACLRDLFAS 71
                  9*****************9998888789999999988877445*********99999975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.9
                   TTTHHHHHHHHHHHHHHHHHH CS
  adh_short_C2 137 nynaygaaKaalealtrylAv 157
                    ++ yg++K  +e ++r +A+
    EHU00169.1 145 TTSPYGTSKLMVEFIIRDFAK 165
                   556899999999999998885 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.7e-05      0.13       7      31 ..       8      32 ..       1      65 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.7e-05
                    --STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  7 GlGYvGlvtaavlaeighevigvDi 31
                    G+GY+G  t ++l e+g +v+++D+
      EHU00169.1  8 GAGYIGSHTVLALLERGDDVVVLDN 32
                    89**********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2532.35
//
Query:       EHU00170.1  [L=298]
Description: putative UTP--glucose-1-phosphate uridylyltransferase regulatory subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-22   80.5   0.0    1.7e-22   80.2   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    7.1e-08   33.0   0.0      1e-07   32.5   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.053   13.3   0.0    1.6  2  PvlArgDC         Pyruvoyl-dependent arginine decarboxylase (P


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   2.8e-26   1.7e-22       1     223 [.       5     258 ..       5     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 2.8e-26
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT...................... CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg...................... 72 
                      kavI + G G  + P t++++k ++pv++k ++iq+ + +++++gi+e iv +t+  +  ve+++ ++++++                      
       EHU00170.1   5 KAVIPVAGLGMHMLPATKAIPKEMLPVVDK-PMIQYIVDECVAAGIKE-IVLVTHASKNAVENHFDTTYELEallearvkrqllsevqsicppg 96 
                      689999************************.*****************.77788899999********************************** PP

                      SEEEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETT....EEEEST...THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC..... CS
  NTP_transferase  73 vevlialepegkgtAdAvalaaelledeksdelvlvLgg....Dhlikd...ayeeavkkaiekaakgtvtfgivpveeateyGviead..... 154
                      v++  + + ++ g+ ++++ a+ +++d+     v+vL++    D   ++   ++ ++v++++e++   +v+     + + +ey vi+++     
       EHU00170.1  97 VTIMNVRQAQPLGLGHSILCARPMIGDNPF---VVVLPDvlldDSTADHlryNLAAMVARFEETGH-SQVLAKHLTDYDLSEYSVITTEqplen 186
                      *****************************7...777764333266666688899**********99.69999999999***********99986 PP

                      ..TTSBEEEEECS-SSHSH..CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECS CS
  NTP_transferase 155 ..eegrverfvEKPkeaka..selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflf 223
                        +  ++ +fvEKP++++   s+la+ G Yv   ++  +l +  e+ + g+ ++td++  + ++++v+++++ 
       EHU00170.1 187 pgDVSTISNFVEKPEHPAElnSDLAAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIASLSKKKTVDVSLMT 258
                      65555***********99899*****************99.779*******************9999998554 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.7e-11     1e-07       2     129 ..       7     160 ..       6     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.7e-11
                   EEEEESS-TTT....TT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC..HHHH.........................HHTTCTS-EEE-T CS
  NTP_transf_3   2 viLAGGrSsRm....gg.dKallplggkpllervldalraagvdevvvvggde..evla.........................alarlgvrvvede 66 
                   vi  +G +  m    +  +K +lp+ +kp++++++d   aag++e+v+v+ ++  +v++                          + ++gv++++ +
    EHU00170.1   7 VIPVAGLGMHMlpatKAiPKEMLPVVDKPMIQYIVDECVAAGIKEIVLVTHASknAVENhfdttyeleallearvkrqllsevqSICPPGVTIMNVR 103
                   555688888885543237********************************99533344466677777777777777766665554456699998888 PP

                   TSS.-SHHHHHHHHHHHH.SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEE CS
  NTP_transf_3  67 dpg.kgplaslaaalraaadadavlvlacDmPlltpelverllaaaaasgadvvvptyegergh 129
                   +++  g ++s+++a   + ++ +++v++ D+ ll+ ++ ++l+ ++a     ++v+++e++ + 
    EHU00170.1 104 QAQpLGLGHSILCARPMI-GDNPFVVVLPDV-LLDDSTADHLRYNLA-----AMVARFEETGHS 160
                   88659***********99.8999999999*9.669999988888875.....444555444433 PP

>> PvlArgDC  Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.8e-06     0.053      21      61 ..      71     111 ..      52     120 .. 0.82
   2 ?   -3.5   0.0       1.3   7.9e+03      92     123 ..     265     296 ..     243     297 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.8e-06
    PvlArgDC  21 Fd.lALldAgIenfNLvkvSSilPpeaeivsveeglkelppG 61 
                 ++ +ALl+A+++ + L +v Si Pp+++i++v ++ + l  G
  EHU00170.1  71 YElEALLEARVKRQLLSEVQSICPPGVTIMNVRQA-QPLGLG 111
                 5525**************************99999.555555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.3
    PvlArgDC  92 ekkgGyiaEysgfgeseeeaeeeaeelaaeml 123
                  +k Gy+  + ++g +++ ++++ +e ++ +l
  EHU00170.1 265 GRKLGYMQAFVSYGLRNNAQGRDFREAIKHIL 296
                 56778888888888877777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2420.79
//
Query:       EHU00171.1  [L=446]
Description: PST family transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-51  175.7  11.0    1.2e-51  175.7  11.0    2.0  2  Polysacc_synt_3  Polysaccharide biosynthesis protein
    2.7e-34  118.8  34.0    1.5e-32  113.1  13.6    2.1  2  Polysacc_synt    Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7  11.0   1.3e-55   1.2e-51       2     290 ..      29     320 ..      28     323 .. 0.95
   2 ?    0.9   1.0     0.024   2.2e+02      48      95 ..     352     402 ..     330     424 .. 0.69

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 1.3e-55
  Polysacc_synt_3   2 LARLLspedFGvvaialvvislanlfvdmGlssaliqkedlteedlstvftfnlvlgllialvlfllapliasfynqpelvtvlrvlalvlils 95 
                      LAR L   + G++ai+ +++++a ++ dmG+ss l++++d+t+++ st++++n+ +++ + lv++ +a  +a+fy  p l  ++ +++l++++ 
       EHU00171.1  29 LARKLETHELGLLAIINAILAVAGVLQDMGMSSYLVHRQDITRREQSTIYWVNVGISFCTGLVMLGIAFPVAWFYHLPALTGLIMLTSLNFLVL 122
                      9********************************************************************************************* PP

  Polysacc_synt_3  96 glssvqeallrrelkFkklfkitlvssvvgvivaivl.AllglgvwALvigtllssllslvllwl..askwrprlkfslkslkelfsfglklll 186
                      g  s+ +a + +  +  +l+ki++ ++++++++ +++  ++ l+v A ++g  +++++++++++     +wrp l+f+ +++ + +++g+++l+
       EHU00171.1 123 GHLSQYQAHYIKTKRMVSLAKIEMGTKLFAFLCVVAMlEFTSLTVAAAILGLFINAFTRILCMIAlgEKSWRPTLEFDKQTFFNAVRYGIYQLG 216
                      ******************************77766551689999*******9999998776665411689************************ PP

  Polysacc_synt_3 187 snllnylarnldnlliGkvlssaaLGlYsvakrlaslpvaeitsviakVlfPalSrlqddkkklrelylkvlrlialivlPiavglavvaellv 280
                      s+++n l +++d l++Gkv+++  LG+Ys ak+l+  p++ ++ vi++ ++P +++ q d+++l++l+lk + +i+l++  ++  + +++  +v
       EHU00171.1 217 SQTINQLRTQADALVVGKVMGADMLGVYSLAKELVLQPLKLVSPVINRLALPRFAEKQHDPEQLKKLFLKGTLVIMLFSSAMYLAIGILSPVIV 310
                      ********************************************************************************************** PP

  Polysacc_synt_3 281 kvllGsqWle 290
                      +vl+G + ++
       EHU00171.1 311 RVLYGASHEQ 320
                      *****98765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.024
  Polysacc_synt_3  48 stvftfnlvlgllialvl...fllapliasfynqpelvtvlrvlalvlils 95 
                      ++ f++n+v +l++ +vl   f++ +++  ++   + + ++++la  ++++
       EHU00171.1 352 NVEFYWNIVASLVVVAVLattFIWPNVLYVALTLSISQVLISTLAHPFFIK 402
                      456899999998888776222444445555555555556666666666665 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1  13.6   1.6e-36   1.5e-32       5     272 ..       8     272 ..       4     274 .. 0.99
   2 !   12.8  11.7   6.3e-06     0.057      76     184 ..     283     396 ..     272     436 .. 0.67

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 1.6e-36
  Polysacc_synt   5 vivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrekkelvslillnvllvllvlvllfllllliaa 100
                    +i+l+ s+ +++ l+  +l  lar l +++ Gl+a++ ai+  + +l d+G++ +lv +++ +r+  e ++++++nv ++++  ++   +++++a 
     EHU00171.1   8 AIWLFGSTCFSAVLQVAQLSFLARKLETHELGLLAIINAILAVAGVLQDMGMSSYLVHRQDITRR--EQSTIYWVNVGISFCTGLVMLGIAFPVAW 101
                    79**************************************************************9..9*******************99*****99 PP

  Polysacc_synt 101 flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslavlrkkfrprf 196
                    f++lp+l+ l+ + +l +l+l + +++++++ + +++   a +++  +  ++++ v+++ f+ l ++aa+lg+++ a+++++  +a+  k +rp+ 
     EHU00171.1 102 FYHLPALTGLIMLTSLNFLVLGHLSQYQAHYIKTKRMVSLAKIEMGTKLFAFLCVVAMLEFTSLTVAAAILGLFINAFTRILCMIALGEKSWRPTL 197
                    ************************************************************************************************ PP

  Polysacc_synt 197 vilslklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfse 272
                     +  ++++++ ++++++  +s+ +++l t+ d ++ g+  ga+ +G Y++a +l++ +  l++p +++ + P+f+e
     EHU00171.1 198 EFD-KQTFFNAVRYGIYQLGSQTINQLRTQADALVVGKVMGADMLGVYSLAKELVLQPLKLVSPVINRLALPRFAE 272
                    ***.**********************************************************************97 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.3e-06
  Polysacc_synt  76 lillnvllvllvlvllfllllliaa.....flglpelav.lylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfld 165
                    l+l+ +l+++l +++ +l++  ++      ++g+++  v +++ l+l + +l ++  + + + q+  r +  + +++v +l++v+ ++  +++++ 
     EHU00171.1 283 LFLKGTLVIMLFSSAMYLAIGILSPvivrvLYGASHEQVyHLIPLMLLFGMLRPMGGLTGAISQANGRTNVEFYWNIVASLVVVAVLATTFIWPN- 377
                    4444444444444444444333333555576666554441444466666699********************************77777777777. PP

  Polysacc_synt 166 ivaavlgavlaalvggivs 184
                    +++++l++++++++ + ++
     EHU00171.1 378 VLYVALTLSISQVLISTLA 396
                    9999999999999875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3407.97
//
Query:       EHU00172.1  [L=407]
Description: exopolysaccharide biosynthetic glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-36  125.7   0.0    2.3e-36  124.9   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    3.6e-28   98.7   0.1    2.1e-27   96.2   0.0    2.0  2  Glyco_trans_1_4  Glycosyl transferases group 1
    8.2e-08   32.4   0.0    4.6e-05   23.5   0.0    2.9  2  Glyco_transf_4   Glycosyltransferase Family 4
    0.00019   21.8   0.0    0.00043   20.6   0.0    1.6  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0033   17.9   0.0       0.17   12.3   0.0    2.6  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   6.5e-40   2.3e-36      13     159 ..     221     372 ..     210     385 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 6.5e-40
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.... CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsis.... 102
                      +++  i+sv+rl+++Kg+d+++ka a lk++   +++++i+Gng++ k +++ +++   +d v++ g++++e++ + l+ adif+lps +    
       EHU00172.1 221 HTPLRIVSVARLTEKKGLDVAVKASAMLKQR-GGQFQYTIIGNGDQDKMMRDFIANEAMQDCVTMPGFKPQEEIRKALSDADIFLLPSKTaadg 313
                      577789**********************877.************************************************************** PP

                      ..BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH CS
  Glycos_transf_1 103 ..EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairkllede 159
                        Eg +++l+EAma+glpv+++ ++g++e+++++++G+lvk+ +a+ala+ + kl + e
       EHU00172.1 314 dmEGIPVALMEAMAVGLPVVSTFHSGIPELIENNVSGWLVKEDDADALADTLLKLSQGE 372
                      ******************************************************98876 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.34   1.2e+03      19      89 ..     105     192 ..      93     194 .. 0.45
   2 !   96.2   0.0   5.8e-31   2.1e-27       3     132 ..     225     369 ..     223     371 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
                      HHHHHH.HHHH.H.H..EEEEEES---...HHHHHHHT..T-T.TEEEE---...........THHHHHHHH-SEEEE-----SHHHHH CS
  Glyco_trans_1_4  19 llleav.pllrkk.d..vrlvivGdgp.rpeeleelaa..gleerveftGfv...........edlaellaaadvfvaPsegfglkllE 89 
                      lll a+ +  r+  +  v lv  G     +++l+el    g ++  +f+G             +d ++l++++ +++  s  +++kl+E
       EHU00172.1 105 LLLPAIvANARQTyEadVFLVHFGYAGaLANKLRELGIlkG-KQATVFHGADisrrhildehkQDYRNLFQQSELMLPISHLWQNKLIE 192
                      56666666666554234444444422223345553221222.23344444222222222222455666666666655555555666655 PP

  == domain 2  score: 96.2 bits;  conditional E-value: 5.8e-31
                      EEEEES---GG.GTHHHHHHHHHHHH.H..HEEEEEES---..HHHHHHHT..T-T.TEEEE---..THHHHHHHH-SEEEE--........-- CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk..dvrlvivGdgprpeeleelaa..gleerveftGfv..edlaellaaadvfvaPs........eg 82 
                      +i+ v rl+e+ kg+d+ ++a + l+++  +++ +i+G+g++++ +++ +a   +++ v++ Gf   e+++++l++ad+f++Ps        eg
       EHU00172.1 225 RIVSVARLTEK-KGLDVAVKASAMLKQRggQFQYTIIGNGDQDKMMRDFIAneAMQDCVTMPGFKpqEEIRKALSDADIFLLPSktaadgdmEG 317
                      799*****655.**************99644*******99855577776655778899*******9788****************99998888* PP

                      -SHHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHH CS
  Glyco_trans_1_4  83 fglkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLl 132
                      ++++l+Eama+glpvV+t  +gi+e++  +++g+lv+++d++ala+ +l+L 
       EHU00172.1 318 IPVALMEAMAVGLPVVSTFHSGIPELIenNVSGWLVKEDDADALADTLLKLS 369
                      ******************999******98899*****************996 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.3e-08   4.6e-05       5     169 ..      15     210 ..      14     211 .. 0.72
   2 !    5.5   0.0    0.0044        16      90     109 ..     325     348 ..     314     382 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.3e-08
  Glyco_transf_4   5 erhvleLaraLarrGheVtvvtpgddgpleeev..................................elvvrvprvplpllkrllrslaflrrl. 64 
                     e++vl+ + ++ ++G++V++++  +++   ++                                   +    ++r  l+ + + +r+ a +++l 
      EHU00172.1  15 ETFVLNQVTHFIDAGYDVEIISVFPGDLVNRHGafdeyglaakthyllpeekvsltdklgqrlklvlP---KITRASLLRSLNVRRYGAQSSKLl 106
                     899******************8888777777778888889999999999999*****88887774331...233333333333333333332221 PP

  Glyco_transf_4  65 ....rrllkre.kpDvvHahspaalgaallalrr..rlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrery 152
                          + +++  + Dv  +h+ +a+ +a  +lr    l+ +  + +Hg +        ++      +  +r l++++   + +S+  ++ l+e +
      EHU00172.1 107 lpaiVANARQTyEADVFLVHFGYAGALA-NKLRElgILKGKQATVFHGADI------SRRHILDEHKQDYRNLFQQSELMLPISHLWQNKLIE-M 193
                     1111333443379****99997776333.44444787888999*******4......45555555555678889*******************.* PP

  Glyco_transf_4 153 gvppekitVipnGvDle 169
                     g+ppeki+V   G+ +e
      EHU00172.1 194 GCPPEKIHVTRMGIEPE 210
                     **************987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0044
  Glyco_transf_4  90 alrrrlgiplVltvHglye......k 109
                     a +   g+p+V t+H+  +       
      EHU00172.1 325 AMA--VGLPVVSTFHSGIPeliennV 348
                     333..79*********9975554442 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07   0.00043       4      84 ..     305     393 ..     302     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
  Glyco_trans_1_2   4 npsrs......espnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtyd 84 
                       ps        e++ + l Ea+a G +++++  +g++el++++ ++ l++  d + la+ + +l + + + + + +aar++v++e++ +
       EHU00172.1 305 LPSKTaadgdmEGIPVALMEAMAVGLPVVSTFHSGIPELIENNVSGWLVKedDADALADTLLKLSQGEVDVAPVVAAARQKVETEFNQH 393
                      5555555555577778899************88**************************************************998654 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.7e-05      0.17      67     158 ..     111     204 ..      14     206 .. 0.60
   2 ?    2.8   0.0     0.039   1.4e+02      89     105 ..     322     350 ..     310     394 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.7e-05
  Glyco_trans_4_4  67 l..rqrrerpdvvhahsptaglaarlarrrrgip...lvvtlhglllrrgsgavrrlyral...errllrradavlvvseaeaeelralgvpad 152
                      +  +++ +  dv  +h  +ag++a  +r   gi        +hg++  r+     +++++     r l+++  + l +s+ +  +l+++g p++
       EHU00172.1 111 VanARQTYEADVFLVHFGYAGALANKLR-ELGILkgkQATVFHGADISRR-----HILDEHkqdYRNLFQQSELMLPISHLWQNKLIEMGCPPE 198
                      2333466788888888876777666666.444332225666666554433.....33322222346899************************* PP

  Glyco_trans_4_4 153 rvvvvp 158
                      +++v +
       EHU00172.1 199 KIHVTR 204
                      ***976 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.039
  Glyco_trans_4_4  89 rlarrrrgiplvvtlh............g 105
                      +  +++ g+p+v t+h            g
       EHU00172.1 322 LMEAMAVGLPVVSTFHsgipeliennvsG 350
                      3334588*********5444444433331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3253.89
//
Query:       EHU00173.1  [L=420]
Description: non-functional pyruvyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-36  124.6   0.1    8.6e-36  124.3   0.1    1.1  1  PS_pyruv_trans  Polysaccharide pyruvyl transferase
  ------ inclusion threshold ------
       0.04   13.9   0.1      0.097   12.6   0.1    1.7  1  DUF3748         Protein of unknown function (DUF3748)


Domain annotation for each model (and alignments):
>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.1   9.5e-40   8.6e-36       1     286 []      13     353 ..      13     353 .. 0.91

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 9.5e-40
                     -HHHHHHHHHHHHHHHHTT-EEEEEESSTTT--HHHHHHHHHTS-GGGEE............................................. CS
  PS_pyruv_trans   1 NyGDelilealvklLrelgpdaeiivltpdpsetkkllkvktpilkklskvllkrlrkkdi.................................. 61 
                     N GD +il +l++ ++ +  d++i+v++ +p+++ +ll     + k +++++   ++ ++                                   
      EHU00173.1  13 NRGDGAILRGLIDSIQAARNDVDIDVISRYPTSSGYLLQQHIQQDKLFLHNNSSGKGLIGSvkrkvanrlmpnimmahlgkggpyksfsvpphlk 107
                     99**************************999999999887666666666666655444444********************************** PP

                     ...........EEE--E....EEEETT-HHH.HHHHHHHHHHS-SSEEEE-SEEE..-S-HHHHHHHHHHHHHTTEEEESSHHHHH.HHHHHHTT CS
  PS_pyruv_trans  62 ......ddaddviivGgdgtlgndgdlsrlp.dalrllflakkagkpviilgqgiGpflnealrkllkkilakadlisvRdelSaelleslglkr 149
                           +d d +i vGg      ++    +    + ++++a++a+kp++++g+++Gpf n  + +l+  ++ ++  + +R+  S++l+++ g+++
      EHU00173.1 108 afteslKDYDAIIQVGG------SFFVDLYGvTQFYHALCALLAKKPIYLIGHSVGPFQNARTNQLANFVFDRVYKLILRESVSLDLMKRDGVTS 196
                     *****988888888888......34444445688************************************************************* PP

                     .-EEE---GGGGG---HHHHHHS-..................------------SS--EE---SSS---HH........................ CS
  PS_pyruv_trans 150 .nveltpDpaflleqlapseilet..................dkrkylrvakssekdledleellakvydlllekgarllllpivkkdglelddl 225
                      +v+ + D+afl+  +    +  +                  + r+++++ k+  ++++d+e  + +v++ ++ +g+++++l+ +   ++ ++d+
      EHU00173.1 197 sKVVAGVDTAFLVRAREVENP--ShslqhwqsvirsrktiaiTVRELAPFDKRLGVTQQDYEAAFGRVINAMIASGYQVVALSTCTGIDSYAKDD 289
                     ***********9984444444..2559999999*******999**************************************************** PP

                     ..........HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE--HHHHHHHHHHT--EEEE--SS CS
  PS_pyruv_trans 226 yllllra...aakkekvtildrfaspeellsliaradfvitsRlHglifalsfgvPvigisyds 286
                     + + l++    +++e+ +++ ++ +  el  l++++ ++i++RlH++i+++ fg+P+++i+y++
      EHU00173.1 290 RMVALTLrdhVQQSEHYHVVMDEFNDLELGVLLSECHLTIGTRLHSAIISMNFGTPAVAINYEH 353
                     **********99*************************************************975 PP

>> DUF3748  Protein of unknown function (DUF3748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.1e-05     0.097      32      94 ..     244     305 ..     200     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
     DUF3748  32 fsrrrGviveeaepekastldalditpPytpGaLrGGshvhvfsgdgewvsftynDhvlkeld 94 
                 f +r Gv+ ++ e    + ++a+ i++ y+  aL   + +  + +d ++v+ t  Dhv ++ +
  EHU00173.1 244 FDKRLGVTQQDYEAAFGRVINAM-IASGYQVVALSTCTGIDSYAKDDRMVALTLRDHVQQSEH 305
                 8899****999999999999998.7899******************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3359.44
//
Query:       EHU00174.1  [L=736]
Description: exopolysaccharide biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-15   56.4   0.0    9.4e-15   54.9   0.0    1.7  2  Head_binding     Head binding
    6.5e-05   22.9   1.1    0.00073   19.4   1.1    2.4  1  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> Head_binding  Head binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0     1e-18   9.4e-15       9     106 ..      49     146 ..      43     151 .. 0.95
   2 ?   -3.8   0.0       1.7   1.5e+04      31      63 ..     333     345 ..     320     382 .. 0.60

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 1e-18
                   E-SSSS---B-SSSSSB-TTEEEEEESTTS-TTSGGGB--EEEE-TTS-EEEE-SSEEE-TTSSEEETTEE-EEEESSSEEEEEE-TTS-EEEEESE CS
  Head_binding   9 vvsmpsqlftlarkfkaaangkiyigkidtdpvipenqiqvyienedgstvpvaqpliinaagypvyngqiakfvtvkghsmavydadgaqqfyyan 105
                    + +p++++++  +f  + +gk++ig+  +d  +p nqi+v++ + +g   +++qp+ +n++ +  +  + a +++  +h+ma+ d++g  +f +++
    EHU00174.1  49 PILTPENVYAMPPQFWQNFQGKLWIGRAGSDARQPGNQIPVFLRDANGNLAQITQPITLNKGNFDQFVKDNAALIANPSHAMALEDSNGQTVFNIPD 145
                   5678999*****************************************************************************************9 PP

                   T CS
  Head_binding 106 v 106
                   v
    EHU00174.1 146 V 146
                   8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.7
                   EEEESTTS-TTSGGGB--EEEE-TTS-EEEE-S CS
  Head_binding  31 iyigkidtdpvipenqiqvyienedgstvpvaq 63 
                   i+ g++dt p                      q
    EHU00174.1 333 IFNGNTDTKP--------------------NRQ 345
                   4445555544....................334 PP

>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.1   8.2e-08   0.00073       6      49 ..     240     283 ..     236     471 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.2e-08
                      GGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS- CS
  Pectate_lyase_3   6 dyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvssp 49 
                      d+Ga  DG+tD+  ai++  + ++++ ++  V fPaGt+ v++ 
       EHU00174.1 240 DFGAIADGKTDSAPAIKAMYQWSQQSDQPICVQFPAGTFFVTGC 283
                      9****************9999*******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5298.02
//
Query:       EHU00175.1  [L=344]
Description: exopolysaccharide biosynthetic glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-35  122.3   0.0    2.4e-35  121.6   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    4.4e-30  104.8   0.0    6.8e-30  104.2   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0041   17.5   0.0      0.011   16.1   0.0    1.7  2  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0   4.1e-39   2.4e-35      14     169 ..     171     324 ..     164     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 4.1e-39
                      T-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-H CS
  Glycos_transf_1  14 kkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGi 107
                      + + +l vgrl+++Kg+dll++ ++++ k+ +p++ lviaG+ge +++l+++a+ l++   v+f+g+vs  ++  +++ +d+++++s++Eg+++
       EHU00175.1 171 RHRQALAVGRLDNQKGFDLLLDIWRDFAKA-HPDWTLVIAGDGELRQQLHDQAAVLGITSSVKFVGKVS--NINDYYRDSDMALMTSRYEGLPL 261
                      568899*********************998.**************************************..*********************** PP

                      HHHHHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1 108 vllEAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairklledeelrerlgena 169
                      vllEA +  lpv+a++   gp e++++ge+G+lv+ n+  ++ +++++l +d+ l  +++e++
       EHU00175.1 262 VLLEAKSWSLPVVAYDcPTGPQEIINHGEDGFLVPMNKKSEFLARMEQLASDDALFYAMSEKT 324
                      **************************************************9997766666655 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   1.1e-33   6.8e-30       4     134 .]     175     313 ..     172     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 1.1e-33
                      EEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---...HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgp.rpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllEa 90 
                       l vGrl +n+kg+dlll+ +   +k+ + ++lvi+Gdg+ r ++l+++aa  g++++v+f+G+v++++++++++d+++++s  eg++l+llEa
       EHU00175.1 175 ALAVGRL-DNQKGFDLLLDIWRDFAKAhPdWTLVIAGDGElR-QQLHDQAAvlGITSSVKFVGKVSNINDYYRDSDMALMTSryEGLPLVLLEA 266
                      689****.899**********888867436**********66.69*9999889*****************************999********* PP

                      HHTT-EEEE-TGG.GTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  91 maaglpvVatdvg.giaevv..gengllvppgdpealaeailrLled 134
                       +  lpvVa d++ g++e++  ge+g+lvp ++ +++ +++++L +d
       EHU00175.1 267 KSWSLPVVAYDCPtGPQEIInhGEDGFLVPMNKKSEFLARMEQLASD 313
                      ************989***************999**********9987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         3   1.8e+04      11      26 ..     100     115 ..      94     117 .. 0.73
   2 !   16.1   0.0   1.8e-06     0.011       1      78 [.     249     329 ..     249     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
  Glyco_trans_1_2  11 pnlrlfEaaacGafal 26 
                      ++ + f a+ac  +a+
       EHU00175.1 100 FKKKRFKAYACEHVAI 115
                      5667788999987776 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.8e-06
  Glyco_trans_1_2   1 ivLnpsrsespnlrlfEaaacGafaltdda.egleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervl 78 
                      ++L +sr+e++ l+l+Ea     ++++ d  +g++e+++ g++++l+      e+++++++l +++++  a++e+ ++ +l
       EHU00175.1 249 MALMTSRYEGLPLVLLEAKSWSLPVVAYDCpTGPQEIINHGEDGFLVPmnKKSEFLARMEQLASDDALFYAMSEKTQHTAL 329
                      6899***********************9989******************999*****************999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2709.68
//
Query:       EHU00176.1  [L=250]
Description: exopolysaccharide biosynthetic glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-30  103.6   0.5    1.5e-29  103.0   0.4    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    3.6e-11   43.4   0.1    5.5e-11   42.8   0.1    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    6.3e-10   39.0   0.6    1.4e-09   37.9   0.1    1.7  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.032   14.7   2.1      0.073   13.6   1.7    1.9  1  Glyco_tranf_2_4  Glycosyl transferase family 2
      0.049   13.2   0.1      0.077   12.5   0.1    1.3  1  LIDHydrolase     Lipid-droplet associated hydrolase
       0.05   13.1   0.0        0.1   12.1   0.0    1.6  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.4   5.1e-33   1.5e-29       2     143 ..      10     148 ..       9     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 5.1e-33
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-TT CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdpd 95 
                      +v+p+yN  +t+l+++ s+l+q +y+d+++++++D StD++ +++ e ++ dpr++++ +  n G a  +n glraa+ ++i+flD+Dde++ d
       EHU00176.1  10 IVMPMYNARQTVLRAVQSVLNQ-TYQDWHLYLINDKSTDDSLAWVTEQCQ-DPRITILDNAVNMGAAETRNVGLRAAKEEIIAFLDSDDEWHSD 101
                      8*********************.**************************7.******************************************* PP

                      HHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCC CS
  Glycos_transf_2  96 wleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfker 143
                      +l++ ++a+ + g+ +v+    ++  + d+  r ++ + ++  + k++
       EHU00176.1 102 KLRQQMQAIAD-GDNLVITEYHYKTRKADHDIRYSKPYLQQDNFVKKQ 148
                      ***********.776888777777777777766655433333333333 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   1.8e-14   5.5e-11       3     112 ..       7     110 ..       4     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.8e-14
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDd 96 
                      ++ ++ p +n+ +++++ + s+l+q+y + +++++ d+s+++ l+ + e   +++d r++++ na n g   +++  n +lra+k ++++++D+
       EHU00176.1   7 TVGIVMPMYNARQTVLRAVQSVLNQTYQDWHLYLINDKSTDDSLAWVTE---QCQDPRITILDNAVNMG---AAETRNVGLRAAKEEIIAFLDS 94 
                      578999********************************99999887776...89*99***997777655...77889***************** PP

  Glyco_tranf_2_3  97 DtvvePdtlkrllqff 112
                      D+ ++ d l+++ q++
       EHU00176.1  95 DDEWHSDKLRQQMQAI 110
                      ***********99988 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.6e-13   1.4e-09       2     106 ..      10     110 ..       9     151 .. 0.86
   2 ?   -1.0   0.0      0.32   9.6e+02     187     210 ..     169     192 ..     165     235 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.6e-13
  Glyco_tranf_2_2   2 vviplraseerhyieerv...lqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDc 92 
                      +v+p+++ +++  +   v   l+++ +   + +l +++d S+++ l  v   ++      l ++     + a +rN G   a+ +++ FlD+D+
       EHU00176.1  10 IVMPMYNARQT--VLRAVqsvLNQTYQ---DWHLYLINDKSTDDSLAWVTEQCQDPRITILDNA--VNMGAAETRNVGLRAAKEEIIAFLDSDD 96 
                      78999999999..54444332888877...8999*****************9999888887888..789************************* PP

  Glyco_tranf_2_2  93 fissDkfekilkli 106
                       + sDk+ ++++ i
       EHU00176.1  97 EWHSDKLRQQMQAI 110
                      *******9998743 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.32
  Glyco_tranf_2_2 187 GhgaEDfdlllRlakaikslekmp 210
                       +g EDf +l  l  ++k+     
       EHU00176.1 169 RKGHEDFLFLYELFSRYKQARIIQ 192
                      578899999988888888765444 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.7   2.4e-05     0.073       2      87 ..      16     101 ..      15     124 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
  Glyco_tranf_2_4   2 neadiLpeflahhlalgfd..rilvydndstDgtrailkel...pevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvvp 87 
                      n+ ++  + ++  l+  ++  ++++++++stD++ a++ e+   p++++l++  ++       e ++ +  r+a+++ ++++D+D   +++
       EHU00176.1  16 NARQTVLRAVQSVLNQTYQdwHLYLINDKSTDDSLAWVTEQcqdPRITILDNAVNMGA----AETRN-VGLRAAKEEIIAFLDSDDEWHSD 101
                      5556666666666666664258****************99663466777777766643....23333.33355566778888888655555 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.6e-05     0.077     156     258 ..      28     120 ..       4     131 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
  LIDHydrolase 156 llPesvkslliklvlgkssspkeavettlkfvksp..evvrqalhlakdEmeeikeddeeedvllkknkekalvfyfgkkDhWvpeetrdelkellg 250
                   +l ++ + + + l+  +++s ++++  ++++++ p  +++++a+++++ E++++  + ++         e+ ++++  ++D+W +++ r+++ +  +
    EHU00176.1  28 VLNQTYQDWHLYLI--NDKSTDDSLAWVTEQCQDPriTILDNAVNMGAAETRNVGLRAAK---------EE-IIAFLDSDDEWHSDKLRQQMQAIAD 112
                   44444444433333..3444445555555555555116799***********99887777.........56.9999999*************99888 PP

  LIDHydrolase 251 eeklevde 258
                     +l+++e
    EHU00176.1 113 GDNLVITE 120
                   87777755 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05       0.1      24      72 ..      79     127 ..      58     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
  Glyco_transf_21  24 qaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsda 72 
                       +l+aak +++ ++Dsd    +d+L++ ++a++d +  ++t +++ +++
       EHU00176.1  79 VGLRAAKEEIIAFLDSDDEWHSDKLRQQMQAIADGDNLVITEYHYKTRK 127
                      5899******************************888888888886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1800.96
//
Query:       EHU00177.1  [L=305]
Description: exopolysaccharide biosynthetic glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-27   95.7   0.2    3.8e-27   95.1   0.2    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    1.4e-13   51.3   0.0    1.9e-13   50.8   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    9.6e-13   48.2   0.8    1.7e-12   47.4   0.8    1.4  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.025   14.5   0.1    1.5  1  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.2   8.6e-31   3.8e-27       1     111 [.       7     118 ..       7     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 8.6e-31
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCH..HHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDet..veileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdep 92 
                      s+vip+yN ++ +  tl+ ++aq +y +fe+i+vDD S D +  +e++++ + +d ++ ++  e +   aga+n+g++ atgdy+ flDaDde+
       EHU00177.1   7 SIVIPAYNASESIVTTLDCVKAQ-TYRHFEVIIVDDKSADAAalAEVVRSERYQDLDINLVLSEVKLNGAGARNKGIELATGDYVSFLDADDEW 99 
                      8**********************.**************443322455555555***************************************** PP

                      -TTHHHHHHHHHHH.TTCE CS
  Glycos_transf_2  93 dpdwleklvealekdgadv 111
                      + d+l ++ +++ + +a++
       EHU00177.1 100 HADKLLQVTKKIAELEAQG 118
                      ***********99986654 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   4.3e-17   1.9e-13       3     206 ..       5     207 ..       3     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 4.3e-17
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetl..evaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      ++++++p++n+++ ++ +l+ + aq+y  +ev++v+d+s ++++  ev++   ++++d ++++v  + +l  +g+  a n +++ +++d+v ++
       EHU00177.1   5 RFSIVIPAYNASESIVTTLDCVKAQTYRHFEVIIVDDKSADAAAlaEVVRS--ERYQDLDINLVLSEVKL--NGA-GARNKGIELATGDYVSFL 93 
                      49**********************************998766533378886..9********99776544..344.3368************** PP

  Glyco_tranf_2_3  95 DdDtvv.ePdtlkrllqff....ltpkvgavgtpvfllnrstlvsalgalefaerhlrflaarralgv.ltlnGsgslirrevlkelegldplf 182
                      D+D+ +  + +l+++  ++    + ++ +++  +v+ +++ +++ +     +ae+ +   +a + +g   ++ +s+ +  re  + + ++d++f
       EHU00177.1  94 DADDEWhADKLLQVTKKIAeleaQGKDKTIIFSQVNIYQDGAFLKVMPTQPPAENET---VAEYLFGCyGFIQTSTIVLKREDAAKI-QFDARF 183
                      ******55666777777779877777999**************99999988899988...77788885477789*************.****** PP

  Glyco_tranf_2_3 183 lltdDyelglrlrragfrtayvpg 206
                      +   Dy+ + r+ r g+r  +   
       EHU00177.1 184 IRHQDYDFCIRADRMGYRFEMIDA 207
                      *****************9988544 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.8   3.8e-16   1.7e-12       1     196 [.       7     192 ..       7     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 3.8e-16
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyydeeielivvddgSsek..fleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDc 92 
                      s+vip ++  e   i  ++   + +   ++e+i+vdd S++   ++e+v+s   + l + l    +     a arN+G++ a +d+v+FlDaD+
       EHU00177.1   7 SIVIPAYNASES--IVTTLDCVKAQTYRHFEVIIVDDKSADAaaLAEVVRSERYQDLDINLVLS-EVKLNGAGARNKGIELATGDYVSFLDADD 97 
                      79*******999..888884444444489**********9972245777766555555554433.447888999******************** PP

  Glyco_tranf_2_2  93 fissDkfekilklitikklrenidaavvlpvvdlnkedsevlkdvedltassrvledllaakstlvkffapssssilinrraflevGGyDErfr 186
                       +  Dk+ ++ k i  ++ +   ++ +   v  + + +  ++  ++    +  v e l+  +      f++ +s+i+++r+   ++  +D rf+
       EHU00177.1  98 EWHADKLLQVTKKIAELEAQGKDKTIIFSQVNIYQDGAFLKVMPTQPPAENETVAEYLFGCY-----GFIQ-TSTIVLKREDAAKI-QFDARFI 184
                      ***********977777777766666665566666655555555555555666666666632.....3333.34455556655555.4777776 PP

  Glyco_tranf_2_2 187 GhgaEDfdll 196
                       h   D+d+ 
       EHU00177.1 185 RHQ--DYDFC 192
                      654..44444 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   5.5e-06     0.025       4     122 ..      92     210 ..      89     221 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.5e-06
  Glyco_trans_2_3   4 llDaDtvlppdclreiaaelaspevaivqgpvlvmnvanwleelaalff..aedhgkdilvre.algrvvpsvGsgaflrrsalqevggwdgde 94 
                      +lDaD+  ++d l+++   +a+ e++     +++ +v n+++  a l    ++  +    v+e  +g+  ++ +s ++l r+ + ++++     
       EHU00177.1  92 FLDADDEWHADKLLQVTKKIAELEAQGKDKTIIFSQV-NIYQDGAFLKVmpTQPPAENETVAEyLFGCYGFIQTSTIVLKREDAAKIQFDA--R 182
                      6777777777777777444433333322222333322.44444444443334555555566662455556666**************9999..9 PP

  Glyco_trans_2_3  95 ssvsEDfdmglrlqrkGyrvrfvpeslv 122
                      +    D+d+++r+ r Gyr+ +++++l 
       EHU00177.1 183 FIRHQDYDFCIRADRMGYRFEMIDAPLA 210
                      **********************998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2223.42
//
Query:       EHU00178.1  [L=378]
Description: putative EPS polymerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-35  122.2  42.5    3.8e-35  121.7  42.5    1.1  1  EpsG      EpsG family
  ------ inclusion threshold ------
       0.43    8.1   1.1       0.67    7.5   1.1    1.2  1  ACR_tran  AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> EpsG  EpsG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7  42.5   4.2e-39   3.8e-35       2     322 ..      33     366 ..      32     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 4.2e-39
        EpsG   2 llvlilililvllagfry.gvGtDyftYveifesisnlsys...fd....snfEpgyvllnllvkslgfdyqfflfilalitllllfvfikkysknlfl 92 
                 +l++i+++il+++ g r  g+G D f+Y ++fe  +        f+    +++Ep+   +++l + ++ + ++flf++ +i++++  +f+kk+s++++l
  EHU00178.1  33 WLLCIAAMILIVFGGIRGlGTGMDDFQYRSFFEDFVRRIQIngfFNtvafFRYEPLIFAMAWLTSLFSHNASVFLFVFCAIAVSINTYFFKKMSPYPVL 131
                 899*******************************9976554666559999************************************************* PP

        EpsG  93 slllfllslffllsmnqiRqglAiailllalifli.kkkkikflllillAslfHsSaiiflpl.yfllklklk.lkllllllafillllllldlilsll 188
                 +l l+  ++f++ ++nqiR gl++a++l  l  ++ k+++++f ++i l+++ H +a++++ l  fl  + ++ + ++++l+++ l ++   ++i  ++
  EHU00178.1 132 ALALYSAHIFINKDINQIRFGLSSALFLGVLWSIYlKRYWWAFTFFI-LSFMSHNTAVMVVTLvPFLFIRDWRwWPVVIILFSLPLSVVGGSSFIALIA 229
                 *************************9996566666666666666555.5********555555244444666644556666666677777777777777 PP

        EpsG 189 slllliseryesYlesdeysggtig.....gvqlaillfilfllllkkileekkkekl..klflnllliglallllllslsvilsRlslyflifqiill 280
                 ++l  ++er + Y ++ +y    ++     + ++++++++++++l + +++e++ ++   +l+   + ig a+ ++l+++ + +sRls y++ ++ i+l
  EHU00178.1 230 GHLGSLGERASGYNNDPSYAMDGSIlsvsnLKNIMLVFIFFYFMLTEELKRENYAQYRlnYLLILSFAIGGAIRIFLYNF-PSGSRLSNYLQQVEPIIL 327
                 77778899********9999888778766533333333333334444444444444448888888888899999999999.***************888 PP

        EpsG 281 ppllkklfkrkkrrlilliliillflflfvkllasgaseqvl 322
                  +l+    +r ++  ++  l+++l+++l+++++ s + + v+
  EHU00178.1 328 TSLIFQ-ARRVWKPALFGMLVFFLLYYLYYNTI-STK-QAVV 366
                 888877.77777775666666666666666666.443.4555 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.1   7.4e-05      0.67     339     377 ..     186     226 ..     182     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHHHSSHHH..HHHHHHHHHHHHHHHHHHHH CS
    ACR_tran 339 eaivLvvlvvflFLqnlra..tlipaiavPlsllgtfavlk 377
                  a+++v lv flF++++r    +i++ ++Pls++g+  +++
  EHU00178.1 186 TAVMVVTLVPFLFIRDWRWwpVVIILFSLPLSVVGGSSFIA 226
                 5899**************64479999********9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2912.41
//
Query:       EHU00179.1  [L=725]
Description: tyrosine-protein kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-34  117.0   2.9    4.2e-34  116.3   1.7    2.1  1  GNVR          G-rich domain on putative tyrosine kinase
    1.4e-21   76.5   0.4    1.4e-21   76.5   0.4    2.5  2  Wzz           Chain length determinant protein
    8.1e-13   48.7   1.1    6.7e-12   45.7   0.0    2.9  3  AAA_31        AAA domain
    9.1e-08   32.2   0.0    3.9e-07   30.2   0.0    2.1  2  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
    9.7e-07   28.8   0.6      0.037   13.9   0.0    2.9  2  AAA_26        AAA domain
    1.2e-06   28.2   0.2      4e-06   26.4   0.2    1.8  1  ParA          NUBPL iron-transfer P-loop NTPase
    3.2e-05   23.5   0.1    8.2e-05   22.2   0.0    1.7  2  CBP_BcsQ      Cellulose biosynthesis protein BcsQ
     0.0018   17.9   0.1      0.037   13.7   0.0    2.7  2  SRP54         SRP54-type protein, GTPase domain
     0.0024   17.2   0.0     0.0095   15.2   0.0    2.0  1  MipZ          ATPase MipZ
     0.0027   18.1  10.8       0.82   10.2   1.1    3.7  3  DUF4140       N-terminal domain of unknown function (DUF4140)
     0.0033   16.8   0.0     0.0093   15.3   0.0    1.7  1  DnaB_C        DnaB-like helicase C terminal domain
     0.0033   17.2   0.0     0.0085   15.8   0.0    1.6  1  IstB_IS21     IstB-like ATP binding protein
     0.0069   15.6   4.6        4.6    6.3   0.1    4.2  4  ArsA_ATPase   Anion-transporting ATPase
     0.0085   15.7   0.0      0.035   13.7   0.0    2.0  1  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.011   15.6   0.3      0.011   15.6   0.3    1.7  1  DUF3381       Domain of unknown function (DUF3381)
      0.011   16.4   6.8      0.048   14.4   0.9    2.7  2  Occludin_ELL  Occludin homology domain
      0.023   14.1   0.1      0.062   12.7   0.1    1.7  1  Fer4_NifH     4Fe-4S iron sulfur cluster binding proteins, Ni
      0.093   12.6   0.1       0.21   11.5   0.1    1.6  1  APS_kinase    Adenylylsulphate kinase
       0.16   11.9   9.6       0.12   12.4   0.7    3.3  3  Prefoldin_2   Prefoldin subunit
       0.21   11.5   9.7       0.74    9.7   9.2    2.0  1  Wtap          WTAP/Mum2p family
       0.51   10.1   9.7      0.049   13.4   3.3    2.0  2  DASH_Spc34    DASH complex subunit Spc34
        1.8    8.9   6.9        3.6    8.0   6.9    1.5  1  HrpB7         Bacterial type III secretion protein (HrpB7)
        4.2    7.4  13.9       0.62   10.1   0.1    3.5  3  T2SSM         Type II secretion system (T2SS), protein M
        5.1    7.2  13.4        6.5    6.9   4.2    2.6  2  DivIVA        DivIVA protein
        5.2    6.8  15.6        4.7    7.0  13.9    1.7  2  ERM           Ezrin/radixin/moesin family
        7.6    7.0   7.7        8.8    6.8   5.7    2.2  2  CCDC-167      Coiled-coil domain-containing protein 167


Domain annotation for each model (and alignments):
>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   1.7     6e-37   4.2e-34       1      81 [.     366     446 ..     366     447 .. 0.98

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 6e-37
        GNVR   1 ktqqeilrLtrDvevnteiYtqLlnkaqelevakagtvgnVrivDeavvpekpvkPkkalivvlalllGlllgvalvllrr 81 
                 ktqqeilrLtrDv++++eiY+qLln++qel+++ka+tvg+Vri+D+a++ ++pv+Pkk+li++++++lGl+++v++vll++
  EHU00179.1 366 KTQQEILRLTRDVQSGQEIYMQLLNRQQELSISKASTVGDVRIIDQAATANAPVAPKKLLIIAASFILGLMVSVGVVLLKA 446
                 69*****************************************************************************96 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.4   2.1e-24   1.4e-21       4      92 .]      19     106 ..      16     106 .. 0.88
   2 ?   -2.5   0.5       9.4   6.5e+03      15      34 ..     423     442 ..     421     445 .. 0.59

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 2.1e-24
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHHHHHHHHCC.HHHHHHHHHHHHHHHHHSSSS--EEEEE. CS
         Wzz   4 DLieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqveassltaq.dvqanlqlasteieilkSrdvlekvisel 92 
                 DL +L+++L++++++I++vt++f+l+a +y+++atp+Y+a+a+++v++k+   +++l+ +  +++++ +  tei+il Sr+vl+k++++l
  EHU00179.1  19 DLAHLVGQLIDHRWVIVAVTAFFMLVATLYTLFATPIYSADAMVQVEQKNT--STVLNELqTLMPTTPASDTEIQILESRMVLGKTVQDL 106
                 9***********************************************988..345555556666656566****************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 9.4
                 XXXXXXXXXXXXXXXXXXXX CS
         Wzz  15 rkklIilvtllfallaviya 34 
                 + ++I++  +l+++++v+++
  EHU00179.1 423 KLLIIAASFILGLMVSVGVV 442
                 44556666666666676665 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.3   1.6e+03      60     119 ..     246     283 ..     230     306 .. 0.54
   2 ?   -1.6   0.1       3.1   2.1e+03      55     104 ..     315     364 ..     293     410 .. 0.67
   3 !   45.7   0.0   9.7e-15   6.7e-12      12     133 ..     539     653 ..     529     669 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.3
      AAA_31  60 yevlieeknikeaiiktkvenldlipssidLaeaeielvelekkeeilkellekvkdeYD 119
                 +                       i+ +  L++++ +  ++ek+ e lk++l +v+ + D
  EHU00179.1 246 N----------------------QIVNNYLLQNVQRKSEQAEKSLEFLKTQLPEVRAKLD 283
                 3......................3344444444444444444444444444444444433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.1
      AAA_31  55 iektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekke 104
                 ++++l+e+ ++e++++++ +k++ +   l+     L + + el ++  + 
  EHU00179.1 315 VQSQLNELTFREAEVSQLFTKDHPTYRALLEKRKTLEDEQAELNKKIAQM 364
                 56677777777777777777666666677777777777777776665553 PP

  == domain 3  score: 45.7 bits;  conditional E-value: 9.7e-15
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekkeeilkel 110
                 G+GKT  +vnla  +ak+g+kvL +D D+    t +l     + ++ l +vl  +++ + a+i++     d++p    +     el+     ++++++l
  EHU00179.1 539 GIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHELL--GADNKSGLSNVLSGKTEFSPAMIQQGAYGFDFLPRGQ-VPPNPSELLM----HRRMSQL 630
                 9*********************************9765..4566789****99**********9999999****775.4455555532....3445789 PP

      AAA_31 111 lekvkdeYDyiiiDcpPsLgllt 133
                 l+  +++YD+++iD+pP L +  
  EHU00179.1 631 LDWASKNYDLVLIDTPPILAVTD 653
                 *****************998765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         7   4.8e+03      79      79 ..     228     228 ..      87     283 .. 0.61
   2 !   30.2   0.0   5.6e-10   3.9e-07       1      86 [.     531     702 ..     531     718 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7
                 E CS
                 x RF
        CbiA  79 v 79 
                 v
  EHU00179.1 228 V 228
                 0 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 5.6e-10
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ++i++ + G GKT++++nLa++ a++g +Vl +D D  +  ++ l g  n+                                                
  EHU00179.1 531 LMITGASPGIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHELLGADNK--Sglsnvlsgktefspamiqqgaygfdflprgqvppnpsellmhrrm 627
                 58999999*********************************9954444444..2558899999999999999999999999999999999999999999 PP

                 ......................................CCHCCCHHHHHHCHCHHHH..............EEEEEEEEESS CS
                 ......................................xxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxx RF
        CbiA  55 ......................................dlkrllellealgkkkall............lkiagvvlnrvdg 86 
                                                               ++++ +++ ++            ++i+gv+ln v  
  EHU00179.1 628 sqlldwasknydlvlidtppilavtdasiigklagtslM-------VARFETNTTKEvdvsfkrfaqngIEIKGVILNAVVR 702
                 999999999999999999999999988877755533331.......333333333334455666677789999999998765 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1    0.0002      0.14       3      34 ..     531     562 ..     529     563 .. 0.90
   2 !   13.9   0.0   5.3e-05     0.037     113     169 ..     646     702 ..     633     713 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0002
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkvgy 34 
                 +++tg ++g+GKT+++  L+    + g+kv +
  EHU00179.1 531 LMITGASPGIGKTFICVNLATLVAKAGQKVLF 562
                 8*******************999988888865 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.3e-05
      AAA_26 113 piteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrn 169
                 p +   ++a i+ +l    ++Var +++t + + ++ + + q++++++GvilN v  
  EHU00179.1 646 PPILAVTDASIIGKLAGTSLMVARFETNTTKEVDVSFKRFAQNGIEIKGVILNAVVR 702
                 5566667899999999999**********************************9754 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   5.9e-09     4e-06       4     174 ..     529     699 ..     526     710 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 5.9e-09
        ParA   4 kviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs....ekkliPveakgikvmSigfllesedeavvwrGpmksk 98 
                 ++++++ +  G+GK+ + vnlA+ +ak g+kv  +D D+      +llg+++++  ++    ++++ P + ++  +  ++fl +  + +      ++++
  EHU00179.1 529 NILMITGASPGIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHELLGADNKSGLSNvlsgKTEFSPAMIQQ-GAYGFDFLPR-GQVPPNPSELLMHR 625
                 7889999999*****************************999999******9765444444455677766533.3344555444.55555555566677 PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNm 174
                  ++qll  +  ++ D+++iD+PP  + +  +++ kl     ++V+  ++ ++++v  +++ f +  +++ Gv+ N 
  EHU00179.1 626 RMSQLLDWA-SKNYDLVLIDTPPILAVTDASIIGKLA-GTSLMVARFETNTTKEVDVSFKRFAQNGIEIKGVILNA 699
                 788888544.4789**********999999*****96.5568999999999**********************996 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       9.7   6.7e+03     101     144 ..     353     397 ..     335     416 .. 0.47
   2 !   22.2   0.0   1.2e-07   8.2e-05       3     151 ..     530     674 ..     528     688 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.7
    CBP_BcsQ 101 kaeallaalkelkeqyrwil...lDlpagasaltrellaladlvllv 144
                 ++ +l+++++++ ++ + il    D+++g++  ++ l++  +++l++
  EHU00179.1 353 EQAELNKKIAQMPKTQQEILrltRDVQSGQEIYMQLLNR--QQELSI 397
                 333333344433322222221113555555444444444..344444 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.2e-07
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaale.yapgldllPfGelnveekenlqqlae 100
                 +l+++G   G+G+t + + La+ + + g++vl iD       + h  +  ++++g+ + +  +++++ a+++  a g+d+lP G++  +  e l     
  EHU00179.1 530 ILMITGASPGIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYT-HELLGADNKSGLSNVLSGKTEFSPAMIQqGAYGFDFLPRGQVPPNPSELL----- 622
                 7899999****************************87766544.4446679***************9987651689***********9988843..... PP

    CBP_BcsQ 101 kaeallaalkelkeqyrwillDlpagasaltrell.aladlvllvvepdanc 151
                  + ++ + l+  +++y+++l+D p   + +  +++ +la ++l+v++ ++n+
  EHU00179.1 623 MHRRMSQLLDWASKNYDLVLIDTPPILAVTDASIIgKLAGTSLMVARFETNT 674
                 23455666667779**********9777666665426788999998888875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.4e-05     0.037       2      46 ..     529     574 ..     528     604 .. 0.79
   2 ?    0.9   0.0      0.44     3e+02      80      92 ..     634     646 ..     624     699 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-05
                 EEEEEEEST.TSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHH CS
       SRP54   2 nvillvGlq.GaGKTttlaKLaallkkegkkvllvaaDtfRaaAve 46 
                 n++++ G   G+GKT  +  La l+ k g+kvl++  D+ R    e
  EHU00179.1 529 NILMITGASpGIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHE 574
                 6889999755****************************98865555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.44
                 HHTTSSEEEEEE- CS
       SRP54  80 keekidvvlvDTa 92 
                  ++++d+vl+DT 
  EHU00179.1 634 ASKNYDLVLIDTP 646
                 5789*******95 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.4e-05    0.0095       9     108 ..     537     646 ..     529     655 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
                 STTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT-----..-EEE-SSS-H.......HHHTTS-HHH..HHHHHHHHHHHH CS
        MipZ   9 kGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylenraataerkglsLpl..pealalseae.......eaeveeeeea..evaeleelvadl 96 
                   G Gk+ ++v +a+ ++k+G++v  id d+r+   +  l+   ++  ++ ls ++  + a ++++++         +v+ + ++    +++++l++ +
  EHU00179.1 537 SPGIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHELLGADNKSGLSNVLSGKTefSPA-MIQQGAygfdflpRGQVPPNPSEllMHRRMSQLLDWA 634
                 5699******************************999999654444333333332200222.222222111111145666554441145789999**** PP

                 HHH-SEEEEE-- CS
        MipZ  97 eaeldfividtP 108
                 ++++d+++idtP
  EHU00179.1 635 SKNYDLVLIDTP 646
                 ***********9 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.026        18      19      46 ..     131     158 ..     124     166 .. 0.82
   2 ?    5.4   2.1     0.035        24      59      95 ..     259     303 ..     246     305 .. 0.64
   3 !   10.2   1.1    0.0012      0.82      33      91 ..     307     364 ..     296     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
     DUF4140  19 kaGtnevtiegLpptldedSlrVegaga 46 
                 k+G+  v   ++p t+d++S++ e +g+
  EHU00179.1 131 KPGEVAVSRLEIPRTIDKRSVKLEVTGK 158
                 78988899999***********997765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.035
     DUF4140  59 nreaeee........elkalraeleeledelaaledelaaaearl 95 
                 ++++++e        +l ++ra+l+++ed+l+a +++ ++++ +l
  EHU00179.1 259 RKSEQAEksleflktQLPEVRAKLDQAEDKLNAFRRANESVDLSL 303
                 333333344566665677888888888888888888777776655 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0012
     DUF4140  33 tldedSlrVegaga.atildvqvervpnreaeeeelkalraeleeledelaaledelaaa 91 
                 ++ ++S+ V+++ + +t  + +v++ + +++++  ++al ++ ++lede+a+l++++a  
  EHU00179.1 307 SALDSSVSVQSQLNeLTFREAEVSQLFTKDHPT--YRALLEKRKTLEDEQAELNKKIAQM 364
                 456789999988444999999999999999999..9*****************9998865 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05    0.0093      17      60 ..     527     569 ..     515     600 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                 XTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  17 qkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsa 60 
                 +++ l+i +a p++Gkt +++n+a+ +a+ + ++v+++  +m +
  EHU00179.1 527 KNNILMITGASPGIGKTFICVNLATLVAK-AGQKVLFIDGDMRR 569
                 667799*******************9996.6679***9999976 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05    0.0085      41      81 ..     521     563 ..     491     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
   IstB_IS21  41 lsfiekkeniv.llG.psGvGKshlaialgveavraglsvlfv 81 
                  + +e+k+ni+ ++G  +G+GK+++ + l++  ++ag +vlf+
  EHU00179.1 521 FAMMEAKNNILmITGaSPGIGKTFICVNLATLVAKAGQKVLFI 563
                 344678888761567358************************8 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.41   2.8e+02     145     198 ..     238     293 ..     232     384 .. 0.77
   2 !    6.3   0.1    0.0067       4.6       3      38 ..     530     566 ..     528     568 .. 0.85
   3 ?    3.5   0.0     0.047        33     109     134 ..     620     647 ..     611     652 .. 0.86
   4 ?    3.5   0.0     0.048        33     208     248 ..     663     703 ..     648     709 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.41
                  HHHHHHHHHHHHHH..HHHHHHHHHHHCCCSHCHHHHHHHHHHHHHHHHHHHHHHH CS
  ArsA_ATPase 145 pevleklleklvkl..keklsplakqlvkllglggvsieealeeleetkeeikkve 198
                  p++++k+l+++v++   ++++  ++q  k l++ +++++e+ ++l++  +++++++
   EHU00179.1 238 PDQISKVLNQIVNNylLQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQAEDKLNAFR 293
                  56667777777664113466666777777777888888766666666666665544 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0067
                  EEEEEES.TTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   3 vilvgGK.GGVGKttvsaatavklsekgkkvllistD 38 
                  +++++G   G+GKt +   +a+ +++ g+kvl i  D
   EHU00179.1 530 ILMITGAsPGIGKTFICVNLATLVAKAGQKVLFIDGD 566
                  566777526***********************99765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.047
                  HHHHHHHHHHHHH..CSSSSEEEEESBS CS
  ArsA_ATPase 109 eilsfeellkyvk..eeeydvvvlDtaP 134
                  e+l   +++++++  +++yd v++Dt+P
   EHU00179.1 620 ELLMHRRMSQLLDwaSKNYDLVLIDTPP 647
                  7777888888888889***********9 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.048
                  EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TT CS
  ArsA_ATPase 208 sfrlVvipEklslkEteRaikeLkkygikvdavivNkllpe 248
                  +  +V   E  + kE   ++k +++ gi+++ vi N ++  
   EHU00179.1 663 TSLMVARFETNTTKEVDVSFKRFAQNGIEIKGVILNAVVRK 703
                  5678999999**************************98765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.1e-05     0.035      33      83 ..     529     569 ..     503     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
      AAA_25  33 gelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdse 83 
                 + l +  + pg GKt+++++la  va  G+           kVl++++++++
  EHU00179.1 529 NILMITGASPGIGKTFICVNLATLVAkAGQ-----------KVLFIDGDMRR 569
                 5688999*******************6555...........56666666555 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.3   1.6e-05     0.011      17      72 ..     322     379 ..     316     403 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
                 XX--EEEHHHHHT-----..HHHHH-SEEE--SHHHHH.HHSSSSS-SSHHHHHH-SS CS
     DUF3381  17 tlykelsvseFiksedpi..elLgkaneitfdkeelkekilkhpktteEikelckDLk 72 
                 ++++e++vs+ ++++ p   +lL k ++++ ++ el++ki+++pkt++Ei+ l +D++
  EHU00179.1 322 LTFREAEVSQLFTKDHPTyrALLEKRKTLEDEQAELNKKIAQMPKTQQEILRLTRDVQ 379
                 5789999******99998889***********************************97 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1      0.08        55      49      97 ..     235     283 ..     205     287 .. 0.85
   2 ?   14.4   0.9   6.9e-05     0.048      15      64 ..     331     380 ..     324     397 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.08
  Occludin_ELL  49 kegskeykkieeeilqeykklkkdpeyqekkkrceyLkekLshiKklik 97 
                    e+ ++++k+ ++i+++y   + +++  +++k +e Lk +L  +++++ 
    EHU00179.1 235 GEDPDQISKVLNQIVNNYLLQNVQRKSEQAEKSLEFLKTQLPEVRAKLD 283
                   45667999***********9999****************9998887765 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.9e-05
  Occludin_ELL  15 aeFnkeYkeYkelhaeleevskkfseLerelkelkegskeykkieeeilq 64 
                   + F k++++Y++l ++ ++++++ +eL++++ +++++++e+ ++++++++
    EHU00179.1 331 QLFTKDHPTYRALLEKRKTLEDEQAELNKKIAQMPKTQQEILRLTRDVQS 380
                   77*************************************99999988654 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     9e-05     0.062      10      60 ..     539     589 ..     530     602 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9e-05
   Fer4_NifH  10 GiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetvldtlr 60 
                 GiGk++   nl++ +a+ g+kvl +  D +   t+ llg+ +++ + ++l 
  EHU00179.1 539 GIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHELLGADNKSGLSNVLS 589
                 9*********************************99999988877766665 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1    0.0003      0.21       3      52 ..     529     579 ..     527     592 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
                 EEEEEESST.TSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SS CS
  APS_kinase   3 vvvwltGls.gsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfs 52 
                  ++++tG s g GK+ i ++l++ + + g++v  +dGd  R    + Lg +
  EHU00179.1 529 NILMITGASpGIGKTFICVNLATLVAKAGQKVLFIDGDMRRGYTHELLGAD 579
                 57899**98689**************************7554444445555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.4   9.5e+02      23      45 ..      61      83 ..      55      86 .. 0.82
   2 ?   12.4   0.7   0.00017      0.12      50     101 ..     240     291 ..     233     294 .. 0.91
   3 ?    2.3   1.3      0.23   1.6e+02      64      87 ..     347     370 ..     332     397 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHS-TT- CS
  Prefoldin_2 23 qletqlkelelvleelelldedt 45
                 +++ + k+  +vl+el++l ++t
   EHU00179.1 61 MVQVEQKNTSTVLNELQTLMPTT 83
                 67788899999****99998775 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00017
                  EETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  50 lvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelqk 101
                  ++ +vl +   + ++++++ + e++ek ++ l+ ql +++++l++ +++l++
   EHU00179.1 240 QISKVLNQIVNNYLLQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQAEDKLNA 291
                  567777777888999***********************************96 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.23
                  HHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  64 keeLeerketlekeiktlekqlek 87 
                  +++Le+++++l+k+i+++ k +++
   EHU00179.1 347 RKTLEDEQAELNKKIAQMPKTQQE 370
                  334444444444444444444333 PP

>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   9.2    0.0011      0.74      56     138 ..     269     395 ..     264     400 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
        Wtap  56 srlrkeleeaenkleeaqeeLqalkftpds.......................................qtGkrLmakcrvLeqENeELgkvl.....e 110
                 + l+ +l e+++kl +a+++L+a++   +s                                        t ++L++k ++Le+E +EL k +     +
  EHU00179.1 269 EFLKTQLPEVRAKLDQAEDKLNAFRRANESvdlsleaksaldssvsvqsqlneltfreaevsqlftkdhPTYRALLEKRKTLEDEQAELNKKIaqmpkT 367
                 558999999****************999999999999999999999999999999999999999999999********************998322223 PP

        Wtap 111 egrvakLeselalqkkfveelkkaleel 138
                 ++++ +L+ +++  +++  +l ++++el
  EHU00179.1 368 QQEILRLTRDVQSGQEIYMQLLNRQQEL 395
                 5778889999999888888888888886 PP

>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   3.3   7.1e-05     0.049     154     238 ..     235     319 ..     148     335 .. 0.79
   2 ?   -0.2   0.6         1   7.2e+02     187     223 ..     340     376 ..     322     410 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.1e-05
  DASH_Spc34 154 dfdvelllkvleelltkyplleakekieelreeYeelseeieeleaeiaeQkkqLeaqnknesessseddsesetskskdvdeli 238
                   d++++ kvl++++++y l++ + k e+ +++ e l++++ e++a+ ++ +++L+a ++ +++ +   +++s  ++s++v++ +
  EHU00179.1 235 GEDPDQISKVLNQIVNNYLLQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQAEDKLNAFRRANESVDLSLEAKSALDSSVSVQSQL 319
                 6789******************************************************999999988777777777777766554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1
  DASH_Spc34 187 YeelseeieeleaeiaeQkkqLeaqnknesesssedd 223
                 Y+ l e+ ++le+e ae +k+++++ k+++e+    +
  EHU00179.1 340 YRALLEKRKTLEDEQAELNKKIAQMPKTQQEILRLTR 376
                 4444444444444444444444444444444333222 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.9    0.0052       3.6       9     142 ..     253     383 ..     246     387 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0052
       HrpB7   9 lverrarreerlraeleaaraalaaaeaalaaaqaqveaardavraheerlddlttgsspfsiadylacrayrdvlegrvraaeaelaaarqaldaaed 107
                 l++  +r+ e+++  le  +++l +  a+l +a+++++a r a ++ + +l++  +  s+ s++  l    +r++   +v ++  +      al ++++
  EHU00179.1 253 LLQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQAEDKLNAFRRANESVDLSLEAKSALDSSVSVQSQLNELTFREA---EVSQLFTKDHPTYRALLEKRK 348
                 667778888999999999999888888888888888777777777777777777777777777777777777654...444444444444556788999 PP

       HrpB7 108 avaatarkiaRndaqidacrerierlrraaerare 142
                  ++  ++++ +  aq+ ++++ i rl r+ +  +e
  EHU00179.1 349 TLEDEQAELNKKIAQMPKTQQEILRLTRDVQSGQE 383
                 9***************************9998776 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0009      0.62      18      67 ..      34      83 ..      31     111 .. 0.89
   2 ?    3.6   1.7     0.088        60      35      71 ..     253     289 ..     247     332 .. 0.73
   3 ?   -0.6   1.4       1.8   1.2e+03      40      95 ..     344     394 ..     339     416 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0009
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       T2SSM 18 llaalglvlllallylllwqPlserieraqaelqklraqlawveeqaaev 67
                ++a+++ ++l+a ly l+ +P+  + +  q e ++    l ++++  ++ 
  EHU00179.1 34 IVAVTAFFMLVATLYTLFATPIYSADAMVQVEQKNTSTVLNELQTLMPTT 83
                799*****************************999999999999988765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.088
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       T2SSM  35 lwqPlserieraqaelqklraqlawveeqaaevralr 71 
                 l+q ++++ e+a+++l+ l+ ql +v++++++++   
  EHU00179.1 253 LLQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQAEDKL 289
                 6788899999999999999999999998888776433 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.8
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT CS
       T2SSM  40 serieraqaelqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqag 95 
                  e+++++++e ++l +++a++ ++ +e+ +l +   +++ ++  +q+++r   q+ 
  EHU00179.1 344 LEKRKTLEDEQAELNKKIAQMPKTQQEILRLTR--DVQSGQEIYMQLLNR---QQE 394
                 678888999999999999999999999998883..333333455666664...344 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.7     0.034        24      16      64 ..     234     284 ..     230     317 .. 0.79
   2 ?    6.9   4.2    0.0094       6.5      19     106 ..     325     413 ..     320     421 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.034
                 EEEEHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHCCCCTXXXXXXXXXX CS
      DivIVA  16 rGYdedeVdeFLdqvakdy..eallkeneelkekvkeleeklkeykeleet 64 
                 +G d+d++ + L+q++++y  +++ +++e+ ++ ++ l+++l e +   ++
  EHU00179.1 234 VGEDPDQISKVLNQIVNNYllQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQ 284
                 688999999999999999866899999999999999999999777655444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0094
                 EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
      DivIVA  19 dedeVdeFLdqvakdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekk.aekiveeae 106
                 +e+eV + + +   +y+all+++++l+++ +el++k++++ + ++++ +     q+  e   +  ++++el i++A    + +i+++a+
  EHU00179.1 325 REAEVSQLFTKDHPTYRALLEKRKTLEDEQAELNKKIAQMPKTQQEILRLTRDVQSGQEIYMQLLNRQQELSISKASTVgDVRIIDQAA 413
                 677888888888889*****************************999888888888888888888888888888876541457777665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  13.9    0.0068       4.7      90     204 ..     253     367 ..     249     374 .. 0.79
   2 ?    3.7   5.2     0.069        48      28      87 ..     333     392 ..     307     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0068
         ERM  90 eaarleeeserkeeeaerLkeeleeareaeeeakekllealstpskseseenveeseteeeeenseeesaeletdeveklsleieeeRvtylekskrlq 188
                 ++++++++se+ e+  e Lk++l e+r+++ +a+ kl ++ +++++ + + + ++  + + + +s+ ++  ++  ev++l ++     + +lek k l+
  EHU00179.1 253 LLQNVQRKSEQAEKSLEFLKTQLPEVRAKLDQAEDKLNAFRRANESVDLSLEAKSALDSSVSVQSQLNELTFREAEVSQLFTKDHPTYRALLEKRKTLE 351
                 5688999**********************************99953322333444444444445556667777777888888888888899******** PP

         ERM 189 eqLkeLkseleqlkde 204
                 +   eL++ ++q+  +
  EHU00179.1 352 DEQAELNKKIAQMPKT 367
                 ***********98555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.069
         ERM  28 LreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklrea 87 
                  ++ + t + L ek++ +e e+ +L++k a++ +  q++ + +++ ++ +e  ++ l++ 
  EHU00179.1 333 FTKDHPTYRALLEKRKTLEDEQAELNKKIAQMPKTQQEILRLTRDVQSGQEIYMQLLNRQ 392
                 5667778999********************998888888777777777776666555444 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4      0.14        93      27      66 ..     261     297 ..     249     301 .. 0.70
   2 ?    6.8   5.7     0.013       8.8       4      53 ..     280     363 ..     277     377 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.14
    CCDC-167  27 lrkeelseeeResleeEeaslkeqleenekeLksLrkeNr 66 
                  +++e s    e l++ + +++ +l++ e +L+  r+ N 
  EHU00179.1 261 SEQAEKSL---EFLKTQLPEVRAKLDQAEDKLNAFRRANE 297
                 33333332...24558888999999999999999999885 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
    CCDC-167   4 seIdkleeklascrerLeaverrlrkeelseee..................................ResleeEeaslkeqlee 53 
                  ++d+ e+kl ++r+  e+v+ +l+ ++  +                                    R+ le+E+a+l++++ +
  EHU00179.1 280 AKLDQAEDKLNAFRRANESVDLSLEAKSALDSSvsvqsqlneltfreaevsqlftkdhptyrallekRKTLEDEQAELNKKIAQ 363
                 67899*******************99988887789*********************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1378  (0.0768587); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 4486.70
//
Query:       EHU00180.1  [L=144]
Description: phosphotyrosine-protein phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-41  141.8   0.0      2e-41  141.7   0.0    1.0  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   1.1e-45     2e-41       1     142 []       5     139 ..       5     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 1.1e-45
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTT CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslapek 99 
                 vl+vC+gNicRSp+ e+lf++ l++      ++v SaG+galvg+ ad++a +v++++g+sl+gh a+ql+++ ++e+Dlil+m++++++++++++p+ 
  EHU00180.1   5 VLVVCVGNICRSPTGERLFKRALPQ------LSVASAGLGALVGHAADKTASDVAADNGLSLEGHEAQQLTANLCREYDLILVMEKRHIEQVNRIDPA- 96 
                 89********************999......69*****************************************************************. PP

                 GGGGEEEGGGGSSTSS---HTTSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc 100 ekakvkllgeyteqldieDPyygeieafeevldeieeavkkll 142
                 +++k++llg++ +q++i+DPy++++eafeev+  +e+a +k++
  EHU00180.1  97 ARGKTMLLGHWLDQKEIADPYRKSREAFEEVYGLLEHATQKWV 139
                 99**************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1070.89
//
Query:       EHU00181.1  [L=379]
Description: polysaccharide export protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-29  101.3   0.1    2.4e-28   98.2   0.1    2.4  2  Poly_export  Polysaccharide biosynthesis/export protein
    9.2e-16   57.3   2.6    1.8e-15   56.4   2.6    1.5  1  Wza_C        Outer-membrane lipoprotein Wza C-terminal domain
    4.1e-12   45.8   1.4    1.6e-05   24.7   0.0    3.0  3  SLBB         SLBB domain
  ------ inclusion threshold ------
      0.067   13.3   0.6        2.9    8.0   0.0    3.1  3  LysM         LysM domain
        0.1   12.0   0.0       0.19   11.2   0.0    1.4  1  Cupin_4      Cupin superfamily protein


Domain annotation for each model (and alignments):
>> Poly_export  Polysaccharide biosynthesis/export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.1   6.6e-32   2.4e-28       3      81 ..      81     165 ..      79     166 .. 0.97
   2 ?    0.0   0.0      0.28     1e+03       9      41 ..     241     276 ..     235     297 .. 0.56

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 6.6e-32
  Poly_export   3 aeseyrigpgDvLsItvwehpels......ssqalqgylVdpdGtIslPllGkikvaGltveelreeieeklskylkdpqvtVrv 81 
                  +++eyrig gDvL++tvw+hpel+       s++ +g  V++dGtI++P++G+++vaG+tv e+r+ei+++l++y+++pqv+V++
   EHU00181.1  81 QNYEYRIGIGDVLTVTVWDHPELTtpagqyRSASDTGNWVHSDGTIFYPYIGRVRVAGRTVGEVRNEIARRLAQYIESPQVDVSI 165
                  689***************************778999***********************************************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.28
  Poly_export   9 igpgDvLsItvwehpels.....ssqalqgylVdpdGt 41 
                  + pgD+L +  ++  +l+     + +++ +   d++G+
   EHU00181.1 241 LYPGDILYVPRND--DLKvfvmgEVKQQATLKMDRSGM 276
                  6667776665433..44444454444555555555555 PP

>> Wza_C  Outer-membrane lipoprotein Wza C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   2.6     5e-19   1.8e-15       1      30 []     345     374 ..     345     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 5e-19
       Wza_C   1 APiaRWNRVIsQLLPTItgvndlteaalrI 30 
                 +P++RWNRVIsQL+PTI gvnd+t+aa+rI
  EHU00181.1 345 TPLTRWNRVISQLIPTIAGVNDATQAAQRI 374
                 7****************************9 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.8   6.3e+03      13      19 ..      82      88 ..      81      89 .. 0.87
   2 !   24.7   0.0   4.5e-09   1.6e-05       2      53 ..     173     220 ..     172     225 .. 0.89
   3 !   19.2   0.1   2.3e-07   0.00083       1      47 [.     256     305 ..     256     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.8
                EEEEETT CS
        SLBB 13 nyevpig 19
                nye++ig
  EHU00181.1 82 NYEYRIG 88
                9*****9 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 4.5e-09
                 EEEESSBSS-EEEEEET.T-BHHHHHHTTT-SBSS.........-EEEE-SSS CS
        SLBB   2 VtVtGeVkrPgnyevpi.gttlsdlieqaGGltddadlksvnLarlavipgGp 53 
                  +VtG++++ g  +++   +t+ d+i++aGGl+ dad+++v+L+      +G+
  EHU00181.1 173 TYVTGAMTTSGQQPITNvPLTILDAINAAGGLAADADWRNVVLTH-----NGR 220
                 599999999999999999*************************98.....444 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 2.3e-07
                 EEEEESSBSS-EEEEEET.T-BHHHHHHTTT-SBSS..........-E.E CS
        SLBB   1 vVtVtGeVkrPgnyevpi.gttlsdlieqaGGltdd.adlksvnLarl.a 47 
                 +V V GeVk+  ++++   g+tl++++ +a G+ ++  d++ v+++r  +
  EHU00181.1 256 KVFVMGEVKQQATLKMDRsGMTLAEALGNAAGMDQTtSDATGVFVIRPtR 305
                 599*************988**************99999999999999655 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.056     2e+02      27      43 ..      78      95 ..      69      96 .. 0.80
   2 ?    8.0   0.0   0.00081       2.9      16      44 .]     222     250 ..     219     250 .. 0.89
   3 ?   -3.4   0.1       2.9   1.1e+04      11      20 ..     311     320 ..     311     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.056
                CTCSSCG.G--TTEEEEE CS
        LysM 27 Nnlsspd.kifpGqkLki 43
                N+++++  +i +G++L++
  EHU00181.1 78 NEIQNYEyRIGIGDVLTV 95
                59**************98 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00081
                 CTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM  16 ygitveklleaNnlsspdkifpGqkLkiP 44 
                 + +++++l++   ls++++++pG+ L +P
  EHU00181.1 222 QRVSLQALMQNGDLSQNHLLYPGDILYVP 250
                 568889999988**************998 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.9
                 HHHHHCTCHH CS
        LysM  11 sIAkrygitv 20 
                 +IA+ y+++ 
  EHU00181.1 311 KIANIYQLNT 320
                 5888887765 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.3e-05      0.19     164     190 ..     227     251 ..     209     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.3e-05
                 --TTCCG--S-SEEEEE-TT-EEEE-T CS
     Cupin_4 164 eplkildefepvedfvLepGDlLYlPr 190
                 ++l   ++ +  + + L pGD+LY+Pr
  EHU00181.1 227 QALM--QNGDLSQNHLLYPGDILYVPR 251
                 3333..33388899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3006.75
//
Query:       EHU00182.1  [L=477]
Description: undecaprenyl-phosphate UDP-galactose phosphotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-65  219.6   0.0    6.8e-65  218.1   0.0    1.8  2  Bac_transf     Bacterial sugar transferase
    3.5e-09   36.9   0.3    7.5e-09   35.8   0.3    1.5  1  CoA_binding_3  CoA-binding domain
  ------ inclusion threshold ------
      0.061   13.5   0.1         22    5.4   0.0    2.8  3  RRM_8          RRM-like domain


Domain annotation for each model (and alignments):
>> Bac_transf  Bacterial sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.46   2.7e+03     162     181 ..      77      96 ..      75      98 .. 0.83
   2 !  218.1   0.0   1.1e-68   6.8e-65       1     183 [.     281     471 ..     281     472 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.46
  Bac_transf 162 YvenlslllDlkillktvka 181
                 Y+ +  ++++lk +++t+  
  EHU00182.1  77 YTYRKPFWFELKEIFRTILI 96 
                 7777889**********975 PP

  == domain 2  score: 218.1 bits;  conditional E-value: 1.1e-68
  Bac_transf   1 KrlfDivlsllalillsplllvialliklessggpvffkqkRvGkngkpFkiyKFRsmvkdaekkl..............gavvklkndpritkvGrfl 85 
                 Kr+fDiv +l ++++l+p+llv+ +l+  + +ggp ++ ++RvG+ng++Fk++KFRsmv ++++ l              ++ +klkndpritkvG+f+
  EHU00182.1 281 KRVFDIVGALSIIVMLLPALLVLGFLVG-R-DGGPPIYGHERVGMNGRKFKCLKFRSMVINSKEVLeevlrtdpvaraewDKDFKLKNDPRITKVGHFI 377
                 9*****************9899999999.4.688****************************9999********************************* PP

  Bac_transf  86 RktslDELPqlinVLkGdMslVGpRPelpeeveeeieeyeee.eerlkvkPGltGlaqvnsgrselsleeklelDleYvenlslllDlkillktvkavl 183
                 RktslDELPql+nV++GdMslVGpRP +++e    + +y    ++ l +kPG+tGl+qv sgr++ ++e+++ +D +Yv+n+sl+ D+ il+ktv +vl
  EHU00182.1 378 RKTSLDELPQLWNVVRGDMSLVGPRPVVEDE----LARYAGDvDYYLMAKPGMTGLWQV-SGRNDVDYETRVYFDSWYVKNWSLWNDIAILFKTVGVVL 471
                 *****************************94....44454453566*************.78888*******************************998 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.3   1.3e-12   7.5e-09      17     135 ..      86     204 ..      76     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.3e-12
  CoA_binding_3  17 lllrvlsawllvllllallsfslkdafSR.lwlaywavvglvllivsrllvravlrrlrrngrnerrvvavgggeelakqiranpelgfrvvgvfd 111
                    +l+ +++++l+  ++ + + ++ + ++SR +wl++w ++ +++ ++++++  +vl+++   +++ +++++ ++ +e+ ++++++   gf v++++d
     EHU00182.1  86 ELKEIFRTILIFSVIELSITALSQWQMSRfVWLLTWLITLVIIPVCRSVFK-RVLNNYGLWKKQTIIIGSSKNAQEAWEALQSEEVMGFDVIAFYD 180
                    66667777777777777777777789***9***********9999887666.5******************************************* PP

  CoA_binding_3 112 drddarseevagvpvlgnladlve 135
                     +    ++ ++gvpvl++ +d+ +
     EHU00182.1 181 VDGTCPQDVMSGVPVLRDEQDVWK 204
                    **977777679*******999865 PP

>> RRM_8  RRM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.52   3.1e+03      38      58 ..      99     119 ..      95     124 .. 0.83
   2 ?    5.4   0.0    0.0036        22      16      46 ..     122     152 ..     107     167 .. 0.83
   3 ?    4.9   0.0    0.0049        29      12      47 ..     263     298 ..     256     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.52
       RRM_8  38 avavqvLavstwqvealvsfl 58 
                  +++ + a+s+wq+   v+ l
  EHU00182.1  99 VIELSITALSQWQMSRFVWLL 119
                 578889999****99999975 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0036
       RRM_8  16 tvshilYpvtsevLhqvYdaYGavavqvLav 46 
                  +  ++ pv   v ++v + YG  + q +++
  EHU00182.1 122 LITLVIIPVCRSVFKRVLNNYGLWKKQTIII 152
                 5677999***************988887665 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0049
       RRM_8  12 vLrvtvshilYpvtsevLhqvYdaYGavavqvLavs 47 
                 v+ + v + l   ts+ L++v+d+ Ga+++ v+ + 
  EHU00182.1 263 VMILRVQNNLAKRTSRFLKRVFDIVGALSIIVMLLP 298
                 66666777778889**************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3355.60
//
Query:       EHU00183.1  [L=523]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-47  159.2  13.9    1.3e-46  158.5  13.9    1.3  1  TerC       Integral membrane protein TerC family
    6.1e-19   67.8   0.0      3e-17   62.4   0.0    2.8  2  CorC_HlyC  Transporter associated domain
    2.6e-14   53.4   1.2      9e-09   35.7   0.0    2.6  2  CBS        CBS domain
  ------ inclusion threshold ------
      0.043   13.6   6.8       0.12   12.2   6.5    1.8  1  DUF475     Protein of unknown function (DUF475)
        8.3    6.3  16.2       0.46   10.4   3.6    3.1  3  DctQ       Tripartite ATP-independent periplasmic transporter


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5  13.9   3.7e-50   1.3e-46       1     180 [.      15     204 ..      15     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 3.7e-50
        TerC   1 ltlvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlvlRillillavallel..............fdlilligglfLlytavkellekrlen 85 
                 +tl++le+vL+iDNlv+ia+lv+klp++ +++a+++G+l+Alv R+ll+++ ++l++l               dl+ll gglfLl++a+ el ++    
  EHU00183.1  15 VTLIVLELVLGIDNLVFIAILVEKLPAALRDRARIIGLLMALVCRLLLLASLSWLVTLtqplftfahhafsaRDLLLLCGGLFLLFKATTELNTRL--- 110
                 589***********************************************************99999986544*******************8754... PP

        TerC  86 klvkeekkkkkktkstllavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvklvle 180
                    ++++++++k  ++++ vv qi+++D +fslD v++av++ +dl+i+++av ++il++ +++k+l+++++++pt+ +l+l++ll+ig++lv+e
  EHU00183.1 111 -EGSDAEDTQQKGGAKFWPVVAQIVVLDAIFSLDAVITAVGMVNDLPIMMAAVTIAILLMLLASKPLTRFVNNHPTIVILCLSFLLMIGFSLVAE 204
                 .467778888889999****************************************************************************987 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.05   1.8e+02      29      51 ..     406     429 ..     384     439 .. 0.75
   2 !   62.4   0.0   8.2e-21     3e-17       5      78 ..     441     513 ..     437     515 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.05
                 H.CT-SBHHHHHHHHH-S---TT- CS
   CorC_HlyC  29 e.edyeTlgGlllellgriPkege 51 
                 + e + Tl++l+    g++P+e +
  EHU00183.1 406 SvEGVVTLSDLMEAIAGNLPNEAD 429
                 445677888888888888888777 PP

  == domain 2  score: 62.4 bits;  conditional E-value: 8.2e-21
                 TTEEEEETT-BHHHHHHHHTSTTHH.CT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEE CS
   CorC_HlyC   5 egsylvdGslpldeleeelglelpe.edyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrve 78 
                  g ++ +G +pld+l+ ++ l+ ++ + y+T++Gl++++l+++P+ege  e++l ++r+  l++d++rI+kv + 
  EHU00183.1 441 AGGWIANGHMPLDDLALYVTLPRENtQHYHTIAGLMMDRLQHVPQEGE--EIQLCEYRLRTLQVDQHRIQKVGIV 513
                 699****************999999678********************..99999*****************986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   5.3e-06     0.019       4      53 ..     306     357 ..     303     361 .. 0.80
   2 !   35.7   0.0   2.5e-12     9e-09       7      56 ..     372     421 ..     366     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-06
                 HSBS..SCEEEETTSBHHHHHHHHHHHT.SSEEEEEETTT.BEEEEEEHHHHHH CS
         CBS   4 imtr..dvvtvppdttleealelmrekg.vsrlPVVdedg.klvGivtlrDllr 53 
                 imt+  dv  ++ +++   ++  + +++ ++r+ V+ e+g +++G+v+  Dll 
  EHU00183.1 306 IMTTrhDVQHIDLSDDPDVIMADL-DRNqHTRI-VITENGnEPLGVVHVNDLLH 357
                 555556888999999999999999.555588**.88788867**********96 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 2.5e-12
                 SSCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllrall 56 
                 r+++++++  t+ +ale++r++   ++ +VVde g + G+vtl+Dl++a++
  EHU00183.1 372 RQPLVFHERITVLQALEQFRQAQT-HFaFVVDEFGSVEGVVTLSDLMEAIA 421
                 67889**************65555.4448********************97 PP

>> DUF475  Protein of unknown function (DUF475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.5   3.3e-05      0.12     151     223 ..      97     167 ..      12     204 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
      DUF475 151 lltyllvdglerlfekdeaakaaavraagkaglalflylevldasfsfdGviGafaitkdivlialGlgigam 223
                 +l++    +l++ +e ++a  + +++++g+    +   + vlda fs+d vi a  + +d+ +++  ++i+ +
  EHU00183.1  97 FLLFKATTELNTRLEGSDA--EDTQQKGGAKFWPVVAQIVVLDAIFSLDAVITAVGMVNDLPIMMAAVTIAIL 167
                 2222233333333333332..2234555555555666789*********************999999988654 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.6   0.00013      0.46      28      85 ..      12      68 ..       4     112 .. 0.72
   2 ?   -1.2   0.4      0.51   1.8e+03     106     120 ..     157     171 ..     131     178 .. 0.68
   3 ?    1.8   3.0     0.058   2.1e+02      99     128 ..     207     236 ..     160     239 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
        DctQ 28 ylfvwlvflgaalalrrgshirvdllverlpprvrrlleliadllallfaa.vliwagw 85
                + +v+l+ l ++l + +   + + +lve+lp+++r  +++i++l+al++ + +l+  +w
  EHU00183.1 12 AGLVTLIVLELVLGIDN--LVFIAILVEKLPAALRDRARIIGLLMALVCRLlLLASLSW 68
                55666666666666655..89999********************999976624444444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.51
        DctQ 106 wvylvlpigaallal 120
                 +++++++i+ +l++l
  EHU00183.1 157 IMMAAVTIAILLMLL 171
                 333444444444444 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.058
        DctQ  99 vlglplwwvylvlpigaallalvalarllr 128
                  +++p+++ y+++ +++++ al  la++ r
  EHU00183.1 207 GFAIPKGYLYAAIGFSVVIEALNQLAQFNR 236
                 3679******99999999999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3670.27
//
Query:       EHU00184.1  [L=602]
Description: AsmA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-38  130.7  14.8    1.7e-19   70.1   9.1    2.1  2  AsmA      AsmA family
    1.3e-21   77.2  18.7    3.2e-20   72.7   6.4    3.0  3  AsmA_2    AsmA-like C-terminal region
  ------ inclusion threshold ------
       0.07   12.6   0.0       0.18   11.3   0.0    1.7  1  AsmA_1    AsmA-like C-terminal region
        0.2   12.4   1.3        2.1    9.2   0.3    3.2  3  Big_9     Bacterial Ig domain


Domain annotation for each model (and alignments):
>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   2.7e-21   1.2e-17       9     175 ..       5     159 ..       1     208 [. 0.83
   2 !   70.1   9.1   3.8e-23   1.7e-19     329     606 ..     239     502 ..     194     504 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 2.7e-21
        AsmA   9 llilivLlLLlv.lliaiialfdpnnykptlqqkvkeatnrplaiegdigrsllPwptlsLsdiklaspegakkpelvsveqveisLsplpLlrkqiei 106
                 +  l++Ll+++v  l a+++l++pn++++ ++q+v++ ++ +l+i+gd+ +   P + + +   +l+ p  a++p +vs +++ +++++lpLl+ q+ +
  EHU00184.1   5 ITTLAILLVVVVaGLTALVMLVNPNDFRSYMVQQVQQRSGYQLTIDGDLRWHVWPKLSILAGRMSLTAPG-AAQP-VVSADNMRLDVNLLPLLSHQLSV 101
                 445666667777567899*************************************************999.7777.*********************** PP

        AsmA 107 asikldgpslslerlkdgkknwqeliqnnqnaasnantqqkqptqtraalsldigeikvsngkvtyddk 175
                 +++ l+ + ++ + ++  ++      +n+ +a +n      +    +a +s+di+++++s + ++++  
  EHU00184.1 102 SQVMLKNAIVRVTPDSAARA-----PENAPRAPHN------SEPTSSAGWSFDIDNLQLSDSLLIWQQP 159
                 **********9999998888.....3333333344......33335679**************999865 PP

  == domain 2  score: 70.1 bits;  conditional E-value: 3.8e-23
        AsmA 329 elslsaktensqvsivLknltlnldklsvngkkiviksdinganqlpkaqarpklrgkLsspeLdldrlqpikaaiatkskaneqkasglsadkknkpl 427
                 +++ ++++ ++++     nl+l  ++  ++g+   +++ +          + +kl ++L+   L++d+l++i +     +++   ++s++  ++  +  
  EHU00184.1 239 SFQGNWDLDKNRFD--VSNLKLTANDSVLSGR---AEGEL---------TPPQKLALDLHASALNMDNLLFISTL----TQQMSGQNSQIAPAPVIADQ 319
                 45777887777777..5566666677777777...66666.........6889**********************....77777777777777766666 PP

        AsmA 428 keerillgvwqeieadlsanidkvtyssllisdlkaklrlegGvlqLsrlkaglygGeleakgqldlskksatvrlklnaknlplkrLladlskikkld 526
                 +e    +  +++i++dls+++d++   +l ++ l++k   ++G++  s l +++ +G++   g++d+++   +v+ +  ++ + +++Ll++l+++++l+
  EHU00184.1 320 PEPTNADSPLNDIDLDLSLQADSAVWRGLNLTKLSLKAVNQQGLVTFSTLSGNVGQGSFSVPGSIDIRQPVTQVAFTPVLNQIAIQPLLKALALPPSLQ 418
                 666666678****************************************************************************************** PP

        AsmA 527 GlldididltgsGnsvatlinnLnGqlklnlnnGalsGlnlnqilvagiaa....ltssfgtkstpfknlavslnlkkGvltln 606
                 G+l+++ +l+g   + a   ++ +G++ ++ ++  l  l+l+q+++   a     + s+ +++ + ++    +l +k+G ltl 
  EHU00184.1 419 GTLSLKGELSGENLTLADAKRSWQGKADIQAHDLKLAQLDLQQMVRSAVARvsdrVSSDSQASGQGIEQVSGQLAMKNGLLTLS 502
                 **********************************************99998******************************986 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.66     3e+03      72      99 ..      47      71 ..      42     100 .. 0.73
   2 !   10.8   2.5   5.7e-05      0.25      15     133 ..     164     295 ..     153     307 .. 0.73
   3 !   72.7   6.4   7.1e-24   3.2e-20       1     228 [.     350     563 ..     350     564 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.66
      AsmA_2 72 gslelnlswqgaplspdlssLsGdlsle 99
                ++++++l+w  +p   +   L G++sl+
  EHU00184.1 47 LTIDGDLRWHVWPKLSI---LAGRMSLT 71
                56777888877776555...56666665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 5.7e-05
      AsmA_2  15 lrldnlrlrspggklsg.....sgswstkggaartnldlkldgvdlgall........krlglaevl.gG.kgslelnlswqgaplspdlssLsGdlsl 98 
                  +++nl+l++ + +  +     + s++ +++ a ++l+++ld ++    l         +l  a+   +G kg+l+++ +w +++ ++d+s+L+ +++ 
  EHU00184.1 164 FTFRNLNLDMEQDQSRIatiglTTSLTRNQRTAVLTLKGQLDKSRYPHQLsgqeaqvdYNLTGASLPpEGiKGTLSFQGNWDLDKNRFDVSNLKLTAND 262
                 55666666665544433211115555555777889999999999999999998877774444444444777888999999******************* PP

      AsmA_2  99 eledgqilgvsllrdlgllkltldfrdlfgeglaf 133
                  + +g+ +g  +l  ++ l l+l  + l++++l f
  EHU00184.1 263 SVLSGRAEG--ELTPPQKLALDLHASALNMDNLLF 295
                 ********9..444444444788899999999866 PP

  == domain 3  score: 72.7 bits;  conditional E-value: 7.1e-24
      AsmA_2   1 lgnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevlgGkgslelnlswqgaplspdlssLsGdlsle 99 
                 l+++s+k+ ++++ +++  l++++++g++s+ gs++ ++   ++++   l++  ++ llk+l+l+++l+G++sl+++ls+++ +l+   +s +G+++++
  EHU00184.1 350 LTKLSLKAVNQQGLVTFSTLSGNVGQGSFSVPGSIDIRQPVTQVAFTPVLNQIAIQPLLKALALPPSLQGTLSLKGELSGENLTLADAKRSWQGKADIQ 448
                 789***********************************99889999999********************************99999999********** PP

      AsmA_2 100 ledgqilgvs.llrdlgllk.......ltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvvvvppisaslav 190
                  +d+++++++ ++     +         +   +d +  g  ++ ++g+++ +nG++t+++++  g+a+ ++ +G ++l +++ld ++ +++        
  EHU00184.1 449 AHDLKLAQLDlQQ-----MVrsavarvSDRVSSDSQASGQGIEQVSGQLAMKNGLLTLSHLDGGGKALTLRGEGRINLVQQQLDVTLGLTLSDWRGDEK 542
                 ********66533.....3334444478999999****************************************************9999876655444 PP

      AsmA_2 191 vaalainlaalaaqkllsddlekiaaleyrvtGswdsP 228
                 ++a                 +     +++r+ Gsw++P
  EHU00184.1 543 LVA-----------------ALSDQVIPFRIYGSWANP 563
                 443.................244445566666666666 PP

>> AsmA_1  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.18      99     153 ..     479     533 ..     421     539 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
      AsmA_1  99 skkGykikngkinfkikkdllviekiklkgdsidiegkGiielkkkkldlklqlk 153
                 ++ G  i++ + ++ +k+ ll++++++  g+ +++ g+G i+l +++ld++l l 
  EHU00184.1 479 QASGQGIEQVSGQLAMKNGLLTLSHLDGGGKALTLRGEGRINLVQQQLDVTLGLT 533
                 45566677777788999********************************999775 PP

>> Big_9  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   4.8e+03      44      68 ..      32      56 ..      25      60 .. 0.78
   2 ?   -1.7   0.1       1.2   5.2e+03      30      47 ..     153     170 ..     108     203 .. 0.59
   3 ?    9.2   0.3   0.00046       2.1      11      83 ..     310     380 ..     298     381 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
       Big_9 44 tsltvtlvtapanGtvtinadgtlt 68
                 s+ v++v++ ++ ++ti++d +++
  EHU00184.1 32 RSYMVQQVQQRSGYQLTIDGDLRWH 56
                5667899999999*****9997765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
       Big_9  30 landtdpdgdaltvtslt 47 
                 l  + +p gda t+ +l+
  EHU00184.1 153 LLIWQQPGGDAFTFRNLN 170
                 444555555555555444 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00046
       Big_9  11 vndaPvavddsvtvtedsvlandtdpdgdaltvtsltvtlvtapanGtvtinadgtltytpnagfsgtdsftY 83 
                 +  aPv++d+   +++ds+l nd+d d + l+ +s ++ + + ++     +n++g +t++  +g  g+ sf++
  EHU00184.1 310 IAPAPVIADQPEPTNADSPL-NDIDLDLS-LQADSAVWRGLNLTKLSLKAVNQQGLVTFSTLSGNVGQGSFSV 380
                 5679***************8.99999965.77899999999999888889999***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4586.19
//
Query:       EHU00185.1  [L=193]
Description: 2'-deoxycytidine 5'-triphosphate deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   41.2   0.0    1.5e-10   40.9   0.0    1.2  1  dUTPase   dUTPase
    1.6e-10   40.4   0.0      1e-06   27.8   0.0    2.0  2  DCD       2'-deoxycytidine 5'-triphosphate deaminase (DCD)


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.7e-14   1.5e-10      22     127 ..      79     187 ..      58     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.7e-14
                 SSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEE..EEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEEEESST.TT CS
     dUTPase  22 kdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvp..gvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltaeleevetl.ka 117
                 + + + pge  l +t  s+++pd+l + + +RS+la++gl+v++    id  ++G + + ++n++k +  +  g  i  L f+++  +   ++++  +a
  EHU00185.1  79 EAFFLHPGELALAVTLESVTIPDDLVGWLDGRSSLARLGLMVHVtaHRIDPGWQGRIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAARPYNRReNA 177
                 5677889999*********************************97788************************************************999 PP

                 ESSBTTXTTT CS
     dUTPase 118 tergeggfgs 127
                 ++rg++g   
  EHU00185.1 178 KYRGQQGADA 187
                 ******9865 PP

>> DCD  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.1e-10     1e-06       5     121 ..       3     126 ..       2     138 .. 0.84
   2 !   11.7   0.0   8.9e-06     0.079     303     353 ..     132     183 ..     124     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.1e-10
         DCD   5 lpdqeiealieegaikaeepleeeqiqPaslDLrLgkkayrv....rasF..lpgkgekvaekleelklheldLtega..vlekgcvYivplleslaLp 95 
                 l d++iea +++g+++ + + + e+i  a +D+rLg++ +r      a F  l+g++++v+  l+++  +e+ L eg    l  g + ++  les+++p
  EHU00185.1   3 LCDRDIEAWLDTGKLAITPRPTVEHINGATVDVRLGNQ-FRTfsghTAPFidLSGPKHEVSAALDRVMSDEIVLPEGEafFLHPGELALAVTLESVTIP 100
                 56889*******************************96.443122246675568********************98752369***************** PP

         DCD  96 adlsaaanpksstGRlDvftRvitdk 121
                 +dl +  + +ss  Rl +++ v + +
  EHU00185.1 101 DDLVGWLDGRSSLARLGLMVHVTAHR 126
                 ********************997753 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.9e-06
         DCD 303 gsravLev.RsrevPFiledgqivgrlvyermaekpealYGeelgsnYqgqg 353
                 + r vLe   s + P  l+ g  +g l +e ++  +++ Y ++ +++Y+gq+
  EHU00185.1 132 QGRIVLEFyNSGKLPLALRPGMLIGALSFEPLSGPAARPYNRRENAKYRGQQ 183
                 5799999735889************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1430.67
//
Query:       EHU00186.1  [L=213]
Description: uridine/cytidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-43  148.2   0.1    2.9e-43  147.9   0.1    1.0  1  PRK         Phosphoribulokinase / Uridine kinase family
    1.5e-05   25.6   0.0    2.1e-05   25.1   0.0    1.2  1  AAA_18      AAA domain
    0.00013   21.7   2.8      0.002   17.8   2.8    2.1  1  CoaE        Dephospho-CoA kinase
     0.0029   17.5   0.0       0.72    9.7   0.0    2.3  2  APS_kinase  Adenylylsulphate kinase
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.021   15.3   0.0    1.7  1  ABC_tran    ABC transporter
      0.044   14.2   0.0      0.059   13.7   0.0    1.3  1  AAA_16      AAA ATPase domain
      0.055   13.9   0.2       0.47   10.9   0.1    2.2  2  AAA_17      AAA domain


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.1   1.1e-46   2.9e-43       1     196 [.      10     199 ..      10     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 1.1e-46
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteea 99 
                 ++g+ag+S++Gk+ +a +l   ++      ++ e++ ++  d  +kd +    +++ +   +++ p a+d dll + l++ k g+ ++ p+Ys++++ +
  EHU00186.1  10 IVGIAGASASGKSLIASTLYREIR----DQVGDEHIGVIPEDAYYKDQSHLTMEERVK--TNYDHPSAMDHDLLLQHLRAVKAGQDIELPVYSYVEHTR 102
                 79*****************99999....334569999999999999998888888885..556779********************************* PP

         PRK 100 apdkeeliegadvlviEGlhalydervaelldlkiyvdisidlelarklqRDiaeRGrsleavldsil.rrkpdyvnyikpqfseadliiqrvptvdv 196
                  + ++  +++++v+++EG++ l d r+++ l+++i+vd+  d++l+r+++RD++eRGrs+++v+++++  ++p + ++i+p +++ad+i++r+ ++ +
  EHU00186.1 103 TQ-ETLHLKPKKVIILEGILLLTDARLRQELNFSIFVDTPLDICLMRRMKRDVNERGRSMDSVMSQYQkTVRPMFLQFIEPSKQYADIIVPRGGKNRI 199
                 **.99999************************************************************9************************99987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   8.1e-09   2.1e-05       1     119 [.      11     158 ..      11     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 8.1e-09
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpe........aldeskrldedkldklldaleenss..................a 70 
                 ++++G++++GK+ +a  L ++      g++++ v++e+ ++ ++ +          +d    +d d l ++l+a+++  +                  +
  EHU00186.1  11 VGIAGASASGKSLIASTLYREI-RdqvGDEHIGVIPEDAYYKDQSHLtmeervktNYDHPSAMDHDLLLQHLRAVKAGQDielpvysyvehtrtqetlH 108
                 78****************8874.144666666666666666666666666668888888888999998888888888877******************9 PP

      AAA_18  71 leegknlvidghlaeleseaakdikk.vvLtaspeelleRlekRgyeeak 119
                 l   k+++++g+l       + ++++ ++++++ +++l R  kR+ +e+ 
  EHU00186.1 109 LKPKKVIILEGILLLTDARLRQELNFsIFVDTPLDICLMRRMKRDVNERG 158
                 99**********999988888888889*******9999888888877754 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.8   7.8e-07     0.002       2     161 ..      10     171 ..       9     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.8e-07
                 EEEEEESTTSSHHHHHHHHHH.TT-EEEEHH..HHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH CS
        CoaE   2 ivgltGgiasGKstvanlfad.lgvpivDaD..lvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadpeekkaLnallhPlirreikke 97 
                 ivg++G  asGKs++a+++   +  ++ D    ++   +  ++++ l+ + e+ + ++ d+  ++d + L +++ a ++  + ++  ++  ++++ ++e
  EHU00186.1  10 IVGIAGASASGKSLIASTLYReIRDQVGDEHigVIPEDAYYKDQSHLT-MEERVKTNY-DHPSAMDHDLLLQHLRAVKA-GQDIELPVYSYVEHTRTQE 105
                 9**************998766477777776522567777777777764.667777777.888999*9999999866655.5678999999998877666 PP

                 HHH--S..SEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HH CS
        CoaE  98 lakles..kyvlldvPLLvEkqlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlsee 161
                   +l+    ++l  + LL++++l++ ++  + vd +l+  + R ++rd  ++    + + +Q ++ 
  EHU00186.1 106 TLHLKPkkVIILEGILLLTDARLRQELNFSIFVDTPLDICLMRRMKRDVNERGRSMDSVMSQYQKT 171
                 666555434555569999999***************************999999888888888766 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00028      0.72       3      29 ..       9      35 ..       7      47 .. 0.87
   2 !    5.5   0.0    0.0056        14     103     120 ..     134     151 ..     123     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00028
                EEEEEESSTTSSHHHHHHHHHHHHHHT CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvek 29
                v+v ++G s+sGKs ia +l ++++++
  EHU00186.1  9 VIVGIAGASASGKSLIASTLYREIRDQ 35
                67889****************998876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0056
                 EEEEEE--HHHHHHHTTT CS
  APS_kinase 103 ievfvdtplevceerDpk 120
                 + +fvdtpl++c  r  k
  EHU00186.1 134 FSIFVDTPLDICLMRRMK 151
                 68**********766544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   8.3e-06     0.021      13      45 ..      10      42 ..       4     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.3e-06
                EEEEEESTTSSHHHHHHHHTTSS--SEEEEEET CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGeilld 45
                +v+i G + +GKS ++++l+++ +++ G+ ++ 
  EHU00186.1 10 IVGIAGASASGKSLIASTLYREIRDQVGDEHIG 42
                799*********************999976443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.3e-05     0.059      21      56 ..       5      44 ..       2     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekd....ggifl 56
                s+++ +v + G+s++GKs ++ +l+r+++++    ++ ++
  EHU00186.1  5 SHQCVIVGIAGASASGKSLIASTLYREIRDQvgdeHIGVI 44
                67778999******************99999666544444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.37   9.4e+02       2      19 ..      15      32 ..      14      43 .. 0.80
   2 ?   10.9   0.1   0.00018      0.47      99     133 ..     131     165 ..     110     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.37
                E-TTSSHHHHHHHHHHHH CS
      AAA_17  2 GgPGsGKgtqceklveky 19
                G   sGK+ ++++l +++
  EHU00186.1 15 GASASGKSLIASTLYREI 32
                8899****9999998776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00018
                 HH..SEEEEEE--HHHHHHHHHHH..TTST-TS-SHH CS
      AAA_17  99 elkpdaiilleadpeeilerrlkd..rtrgrdddnee 133
                 el  ++ i+++++ + +l rr+k+   +rgr+ d+ +
  EHU00186.1 131 EL--NFSIFVDTPLDICLMRRMKRdvNERGRSMDSVM 165
                 33..7899****************7668*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1517.32
//
Query:       EHU00187.1  [L=203]
Description: hypothetical protein CKS_2233 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-08   32.7  16.6    6.1e-08   32.5   9.0    2.3  2  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.7    0.0014        24      62      98 ..      13      49 ..      10      57 .. 0.73
   2 !   32.5   9.0   3.4e-12   6.1e-08      55     128 ..      68     143 ..      61     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0014
        PAP2 62 afafalalllalllrrkrkkiglvllalillllavlv 98
                +     a+++al+l+ k  ++++v+++l+++ la lv
  EHU00187.1 13 MLLIPTAVIIALILPWKSDNRRTVWYWLFAFGLAGLV 49
                5555578899999999999988888888888777554 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 3.4e-12
        PAP2  55 sf..PSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalay 128
                  f   SgHsa++++l+ ++ +l+  +++  ++  ++ + ++  ++v++sRl++++H ls vl+Gll+G++l +++ 
  EHU00187.1  68 NFtgFSGHSAMSATLWPVMLWLISGRWPSLWRGFAIGVGYMIPLMVGFSRLVIHAHSLSEVLTGLLLGFTLSTAFL 143
                 45668****999999999888888888887788888888899***************************9988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1565.71
//
Query:       EHU00188.1  [L=1111]
Description: PAS/PAC domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-43  147.6   0.1    4.1e-43  146.9   0.1    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain
    1.9e-35  121.0   0.1    2.4e-16   59.8   0.1    3.4  3  PAS_3     PAS fold
    4.2e-31  107.3   0.6      1e-10   41.6   0.0    3.8  3  PAS       PAS fold
      5e-26   91.0   0.0    1.3e-09   38.3   0.0    3.6  3  PAS_9     PAS domain
    2.3e-22   79.3   0.2    4.8e-09   36.5   0.0    4.0  4  PAS_4     PAS fold
    2.4e-20   72.9  45.6    3.4e-20   72.4  45.6    1.2  1  MASE1     MASE1
    3.9e-14   52.7   0.4      1e-13   51.4   0.4    1.7  1  EAL       EAL domain
    2.3e-08   33.9   0.1      0.025   14.6   0.0    4.5  4  PAS_8     PAS domain
    0.00044   20.8   0.0      0.023   15.3   0.0    2.8  2  PAS_10    PAS domain
    0.00059   20.0   0.0      0.022   14.9   0.0    2.9  2  PAS_7     PAS fold
      0.006   16.8   0.9      0.037   14.3   0.1    2.7  3  GGDEF_2   GGDEF-like domain
  ------ inclusion threshold ------
      0.056   14.0   0.0       0.57   10.7   0.0    2.3  2  Plus-3    Plus-3 domain
       0.12   12.5   0.1         17    5.5   0.0    3.2  3  PAS_11    PAS domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.1     3e-46   4.1e-43       1     160 [.     688     844 ..     688     845 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 3e-46
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a hD+lT+LpNR+ +e +l+++l++a+++q++ +++++dld+Fk++nd+ Gh++GD++L+e+++ ++ +lr++d++aRlggdeFa+l+pe+  ++a+++
  EHU00188.1 688 ALHDTLTRLPNRASFELQLKRLLSDAAEHQHQHVLVFIDLDKFKAVNDSAGHAAGDALLSELSDLMRHHLRSTDFLARLGGDEFAVLMPECLVDQARDV 786
                 68************************88899**************************************************************999999 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                  +ri r++++   ++   g++ +v +s+G++ ++  ++ + +++l++Ad+a+y+aK++gr 
  EHU00188.1 787 VQRIVRAVNDYCFEWL--GRAYQVGASAGMTQIS-PNNWQSSDVLSQADIACYNAKRSGRG 844
                 9999999999999888..557779*********5.899999******************97 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   4.2e-14   5.8e-11       3      86 ..     328     410 ..     327     413 .. 0.96
   2 !   59.8   0.1   1.8e-19   2.4e-16       3      89 .]     455     539 ..     453     539 .. 0.97
   3 !   14.9   0.0   1.7e-05     0.024       2      86 ..     580     668 ..     579     671 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.2e-14
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkge.pyegeyRirrkdGeyrwveararvirdengkpvrvi 86 
                  v+++ +++lGy + el++   ++ ++ hp+D+     +++++l++   +++ e R++rkd e++wv+ +++ +rd++ +p+++i
  EHU00188.1 328 QVNKSLCDTLGYPEYELKNL--TFQQITHPDDLGIDDGKMDKLLAGEIlSFTLEKRYFRKDHEIVWVRLTVSLVRDSEQQPLYFI 410
                 68999***************..**********************9999**********************************998 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 1.8e-19
       PAS_3   3 yvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGeyrwveararvirdengkpvrvigva 89 
                  +++r++ ++G++++e+ +  + w++lvhp+Dr+ + +++q+a+++ ++++ eyR++r  G+y w++++a+ + +++g++ r++gva
  EHU00188.1 455 LWDKRMYTLFGLQSDEVPSF-DLWIKLVHPDDRAFCVQTIQQAIEESSAFQMEYRVMREEGHY-WIRSQANRLLSQEGRIERILGVA 539
                 6******************9.*****************************************9.*********************96 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 1.7e-05
       PAS_3   2 iyvserveeilGyspeellgk.veswldlvhpeDrervrealq..ealkkgepy.egeyRirrkdGeyrwveararvirdengkpvrvi 86 
                 +++++  e+++G+s+e   g+ v+++l + h    + v++ +   ++ +k +py ++e+ + + +Ge++ ++ +++++++e+g +   +
  EHU00188.1 580 TFMNPVAEKMTGWSQEAAVGRpVSELLHITHGRHGAPVENLMInpTHSEKTAPYlSEEWVLHTLNGEHIDIHYTITPLKSESGTERGAV 668
                 689******************99***********9999998885566677779999**************************9887655 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   8.1e-10   1.1e-06       2     108 ..     305     411 ..     304     416 .. 0.93
   2 !   33.2   0.1   3.1e-11   4.3e-08      13     113 .]     443     542 ..     437     542 .. 0.93
   3 !   41.6   0.0   7.5e-14     1e-10       7     113 .]     563     674 ..     557     674 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 8.1e-10
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEET CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda.elaelleqlleqgeesrageisfklrdgrpihlevraspvrda 99 
                 ++r+ +e ++ ++ +v   gr+l vN++ ++ lG+++ e+ + ++  +i ++dd  ++  ++ +ll+    s + e++  ++d++++++++++s vrd 
  EHU00188.1 305 RFRNAMEYSAIGMALVSPEGRWLQVNKSLCDTLGYPEYELKNLTFQ-QITHPDDLgIDDGKMDKLLAGEILSFTLEKRYFRKDHEIVWVRLTVSLVRDS 402
                 68899999999*****************************998877.888888888*************99***99999999***************** PP

                 TEEEEEEEE CS
         PAS 100 ggeilgflg 108
                 ++++l+f+ 
  EHU00188.1 403 EQQPLYFIA 411
                 ****99986 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 3.1e-11
                 EEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC.TTSSEEEEEEEEEEEEETTEEEEEEEEEE CS
         PAS  13 pifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl.rdgrpihlevraspvrdaggeilgflgvl 110
                 +++ ++ +   +++ + + +l+Gl+ +ev +  l + ++++dd  +a ++++  ++ ees+a+++  ++ r  + ++++ +a+ +++ +g+i  +lgv+
  EHU00188.1 443 GVWEWNMNSGEMLWDKRMYTLFGLQSDEVPSFDLWIKLVHPDD--RAFCVQTIQQAIEESSAFQMEYRVmREEGHYWIRSQANRLLSQEGRIERILGVA 539
                 8999********************************9999999..88888888888888888888888889**************************** PP

                 EES CS
         PAS 111 rdi 113
                 +di
  EHU00188.1 540 QDI 542
                 **8 PP

  == domain 3  score: 41.6 bits;  conditional E-value: 7.5e-14
                 HHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.....HHHHHHHHHHHHTT-ECCCCEEEEC.....TTSSEEEEEEEEEE CS
         PAS   7 leslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda.....elaelleqlleqgeesrageisfkl.....rdgrpihlevrasp 95 
                 l+s+ ++++ +D   r++++N+ ae+++G+s+e ++g+++++l+h ++ +     e   +  ++ e + +  ++            +g+ i ++ + +p
  EHU00188.1 563 LDSIGEAVISTDQAMRVTFMNPVAEKMTGWSQEAAVGRPVSELLHITHGRhgapvENLMINPTHSEKTAPYLSE-----EwvlhtLNGEHIDIHYTITP 656
                 789*******************************************9776443333333333333333333333.....1444558************* PP

                 EEETTEEEEEEEEEEEES CS
         PAS  96 vrdaggeilgflgvlrdi 113
                 + +++g+ +g+++v++d+
  EHU00188.1 657 LKSESGTERGAVMVIQDV 674
                 *****************7 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   4.6e-11   6.3e-08       3     104 .]     316     418 ..     314     418 .. 0.85
   2 !   15.7   0.0   9.5e-06     0.013      20     103 ..     460     543 ..     455     544 .. 0.89
   3 !   38.3   0.0   9.2e-13   1.3e-09       4     104 .]     570     676 ..     567     676 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.6e-11
       PAS_9   3 gilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk..kerevevvlirkngetfwvlltaspvkdddgelvgiivil 99 
                 g++++ p+gr l +N+++++ lGy + e+ +  + ++  ++++   +  ++ + +      ++ e  + rk+ e +wv+lt+s v+d+++    +i+ +
  EHU00188.1 316 GMALVSPEGRWLQVNKSLCDTLGYPEYELKNLTFQQIT-HPDDLGIDDGKMDKLLAGeiLSFTLEKRYFRKDHEIVWVRLTVSLVRDSEQQPLYFIAQI 413
                 788889********************************.4444444444444444445599***************************999999***** PP

       PAS_9 100 rDite 104
                 ++i+e
  EHU00188.1 414 VNISE 418
                 ***97 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.5e-06
       PAS_9  20 alrllGyspeevlgksitdlf...vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilrDit 103
                 + +l+G +++ev   +++  +   ++ +   +++++a+e+ +  +++ e+  +r++g  +w++  a ++ +++g++ +i+++ +Dit
  EHU00188.1 460 MYTLFGLQSDEVPSFDLWIKLvhpDDRAFCVQTIQQAIEESS--AFQMEYRVMREEG-HYWIRSQANRLLSQEGRIERILGVAQDIT 543
                 568999999999999999888666667777788888888888..***********98.****************************9 PP

  == domain 3  score: 38.3 bits;  conditional E-value: 9.2e-13
       PAS_9   4 ilidnpdgrilyaNeaalrllGyspeevlgksitdlf......vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgii 96 
                 ++ ++   r++++N+ a++++G s e+ +g+++++l+      +++p +n  ++    +++ +  ++e vl + nge + ++ t++p+k+++g+ +g++
  EHU00188.1 570 VISTDQAMRVTFMNPVAEKMTGWSQEAAVGRPVSELLhithgrHGAPVENLMINPTHSEKTAPYLSEEWVLHTLNGEHIDIHYTITPLKSESGTERGAV 668
                 44465666999***********999*************888888888888888888888888999********************************** PP

       PAS_9  97 vilrDite 104
                  +++D++e
  EHU00188.1 669 MVIQDVSE 676
                 ******98 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     2e-07   0.00028       7     109 ..     316     420 ..     311     421 .. 0.90
   2 !   17.0   0.0   3.9e-06    0.0054      41     109 ..     477     546 ..     432     547 .. 0.83
   3 !   36.5   0.0   3.5e-12   4.8e-09       1     109 [.     563     678 ..     563     679 .. 0.80
   4 ?   -2.3   0.0       3.8   5.3e+03      48      74 ..     698     724 ..     687     729 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2e-07
       PAS_4   7 alavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll...pgeerhyelrllPlrdesGevigvlvis 102
                 + a ++p+gr+l +N++ ++ +g+p  el + t++++  ++d +  +  ++++l+ge  ++f+ e +    + e +++ l+++ +rd++ +++ +++ +
  EHU00188.1 316 GMALVSPEGRWLQVNKSLCDTLGYPEYELKNLTFQQITHPDDLGIDDGKMDKLLAGE-ILSFTLEKRYfrkDHEIVWVRLTVSLVRDSEQQPLYFIAQI 413
                 567889*******************************9999***************6.66666666666*************************99999 PP

       PAS_4 103 rDiTerr 109
                 + i+e++
  EHU00188.1 414 VNISELK 420
                 9999976 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.9e-06
       PAS_4  41 a.ellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisrDiTerr 109
                 +  l+ ++d+a   + +++++e+  + +++  + ++ ++ ++  ++++l+  +G++  +l++++DiT +r
  EHU00188.1 477 WiKLVHPDDRAFCVQTIQQAIEESSAFQMEYRVMREEGHYWIRSQANRLLSQEGRIERILGVAQDITPLR 546
                 54455555777788899******999999999999********************************876 PP

  == domain 3  score: 36.5 bits;  conditional E-value: 3.5e-12
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll......pgeerhyelrl..lPlrde 91 
                 lds+ +a++  d  +rv+++N+ a+++ g+++e+++G+++ ell     +r+ ++++ ++   ++ e +  +l          ++h+++++  +Pl+ e
  EHU00188.1 563 LDSIGEAVISTDQAMRVTFMNPVAEKMTGWSQEAAVGRPVSELLHI-THGRHGAPVENLMINPTHSEKTAPYLSeewvlhTLNGEHIDIHYtiTPLKSE 660
                 79999************************************96554.5566666666666555555555555555555566666666666666****** PP

       PAS_4  92 sGevigvlvisrDiTerr 109
                 sG+ +g++++++D++e r
  EHU00188.1 661 SGTERGAVMVIQDVSESR 678
                 ****************87 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.8
       PAS_4  48 daarleralrrvlegeepiefleelll 74 
                  +a +e +l+r+l+  + ++ +++l++
  EHU00188.1 698 NRASFELQLKRLLSDAAEHQHQHVLVF 724
                 688899999999999999999998876 PP

>> MASE1  MASE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4  45.6   2.5e-23   3.4e-20       5     299 ..      22     296 ..      18     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.5e-23
       MASE1   5 llllyallialglslalalvssggvplWlPsGlalaalllfgrrgwpgillaavlasislfllfagnlllalaiaavntleallgalllrrllpsrnrl 103
                 l+l+ ++l++++l   l+ vs+ ++plW++++l+ ++++ + +r +p  l+a++++++++ +++ g+ l +l +a+ n+l+a +g  llr ll++  +l
  EHU00188.1  22 LGLVSFVLTLFCL--ELIVVSGKISPLWFSTALMTVVVFRCTSRQLPLFLAACLIGTAAANAFVIGPALSNLKFALLNLLQAGIGGMLLRALLNREAPL 118
                 7899999999999..************************************************************************************ PP

       MASE1 104 etlkdwllfvvaaaiiaalllaiiglalllllgliplaslssswltwwlgsatGvlvvaplllllrrylrqrhrlsafveqdlaplaakllllfallll 202
                  +l+dwl+fv+a+++i++l++ + +l +l +     ++ ++++++tw++++++G+l + p+llll+ +l +   ++a              +lf++l+ 
  EHU00188.1 119 VSLRDWLRFVFATGVISPLIGGVLALWVLQV----GQQASFAFFYTWVISEIIGMLALGPVLLLLSWPLPKGYLKRA--------------SLFETLFS 199
                 *******************998777666544....5699999**********************9988877777777..............89999999 PP

       MASE1 203 lllvllllllllpfednsplayLllppvlwaAfrfgvrgaslallllavllilftaqgqgpfvqdsgaessaaillqlflavla...lvaLlvsaaise 298
                 l+l+l++  l l+  +    ++ +l++++w A+r++  +a++ l++l +  +  +++ +  +v+ + +++   + +  fl+vl+   + +L++ a+ +e
  EHU00188.1 200 LVLTLIASYLSLR--FLPWPFTFILVVLFWCAVRLPKVEAFV-LFFLNASFMALLLSLDWIIVTPTTTNYAMIVSWLPFLMVLIpchIMSLVMDAFRHE 295
                 9998888777777..333344679******************.66666666666777788888888888887777888888877222456677777766 PP

       MASE1 299 r 299
                 +
  EHU00188.1 296 T 296
                 5 PP

>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.4   7.3e-17     1e-13      55     236 ..     916    1094 ..     896    1096 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 7.3e-17
                  HHCTCHHHHHHHHHHHHHH.HHHHHHCHTT--EEEEEE--CHHCC-CCHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-E CS
         EAL   55 erlgllaeldrwvleqalq.dlrrlaeqldadiklsinlspasladeefleelrellkqsgpspsrLvleitesellarlealqeevlarLralGir 150 
                  +++ l ++l+  ++e +++ ++++++   +++i l + ++ ++l+++ f+e+l  ++++sg++ s+  + +  +++l+  e+l    l++Lr++G+r
  EHU00188.1  916 TDAALKQRLEDNIVEAFFRhRIAAMS---QKGIALILPVDVNALYNPVFVEKLCVRFAESGLANSNSGIALHAASVLSGGEQLL-GTLMKLRQAGCR 1008
                  55566677777788888886777775...889999*******************999999999999*****************9.************ PP

                  EEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT- CS
         EAL  151 ialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgikvvaegVeteeqlealrelgcdlvQGylls 236 
                  i+l +fg+  +++++l+   +d + l  +l+a+l+++  +  l++ + +  +e +i ++a  V  ++ l++l +l++d v G  ++
  EHU00188.1 1009 IVLQQFGRNLDAFNQLTGKVVDCLILAPELVANLHNNLMDEMLISIIQSQTNERNIILLAGPVSVPAVLTTLTSLDVDGVWGSAVA 1094
                  ***********************************9999*****************************************999887 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   7.2e-05     0.099       2      50 ..     305     354 ..     304     370 .. 0.80
   2 ?   -2.3   0.0       3.5   4.8e+03      29      53 ..     459     482 ..     454     498 .. 0.59
   3 !   14.6   0.0   1.8e-05     0.025       7      43 ..     563     600 ..     555     615 .. 0.77
   4 ?   -0.4   0.0      0.92   1.3e+03      14      35 ..     721     742 ..     709     790 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.2e-05
       PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGys.adlkgellgqllp 50 
                 r+r+++e s+ g+a+v  + +r ++vN++ ++ lGy+  +lk  +++q+ +
  EHU00188.1 305 RFRNAMEYSAIGMALVSpE-GRWLQVNKSLCDTLGYPeYELKNLTFQQITH 354
                 9***************944.56*************9876677777765554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.5
       PAS_8  29 aalellGys.adlkgellgqllpvlr 53 
                 +++ l+G+  +++   +l+  ++ ++
  EHU00188.1 459 RMYTLFGLQsDEVPSFDLW--IKLVH 482
                 78999**886776665553..32222 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.8e-05
       PAS_8   7 fesspdgiavvdlgd..rivdvNqaalellGys.adlkge 43 
                 ++s+ ++++ +d  +  r++++N+ a++++G+s +   g 
  EHU00188.1 563 LDSIGEAVISTD--QamRVTFMNPVAEKMTGWSqEAAVGR 600
                 799999999999..5668**************94333333 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.92
       PAS_8  14 iav.vdlgdrivdvNqaalellG 35 
                 ++v +dl++ +  vN++a +  G
  EHU00188.1 721 VLVfIDLDK-FKAVNDSAGHAAG 742
                 444367778.9999999877776 PP

>> PAS_10  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.17   2.3e+02      44     106 .]     479     543 ..     475     543 .. 0.76
   2 !   15.3   0.0   1.6e-05     0.023       5     105 ..     563     674 ..     559     675 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.17
      PAS_10  44 adihpkkavknveeviealrtgekdevevvvp..kngkwvlvrylpyrdedgeiaGvvetfvDit 106
                 + +hp+++   v+ + +a+ ++   ++e+ v   + + w+  +  ++  ++g+i+ ++ + +Dit
  EHU00188.1 479 KLVHPDDRAFCVQTIQQAIEESSAFQMEYRVMreEGHYWIRSQANRLLSQEGRIERILGVAQDIT 543
                 668999888888888888888887666666542266677777778888999*9999999999996 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.6e-05
      PAS_10   5 LnstpieltflDdnlqirrFtp.aakklfklipadvGrpladi...hpkkavknvee.viealrtgek..devevvv..pkngkwvlv..rylpyrded 92 
                 L+s+  +++  D+ +++++ +p a+k+    ++a vGrp++++   ++ +    ve+ +i+   ++++    +e +v  + ng+++ +  ++ p++ e 
  EHU00188.1 563 LDSIGEAVISTDQAMRVTFMNPvAEKMTGWSQEAAVGRPVSELlhiTHGRHGAPVENlMINPTHSEKTapYLSEEWVlhTLNGEHIDIhyTITPLKSES 661
                 7778888999************556788888999*******9864433355555555144444444444445566664458888865511678****** PP

      PAS_10  93 geiaGvvetfvDi 105
                 g  +G+v++++D+
  EHU00188.1 662 GTERGAVMVIQDV 674
                 ************8 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.24   3.4e+02       7      42 ..     316     350 ..     310     357 .. 0.83
   2 !   14.9   0.0   1.6e-05     0.022       1     112 [.     563     679 ..     563     682 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.24
       PAS_7   7 GisvfDadlrLvawNrrylelldlpeelvqvgvple 42 
                 G+++++ ++r + +N+  ++ l++pe  +    +++
  EHU00188.1 316 GMALVSPEGRWLQVNKSLCDTLGYPEYEL-KNLTFQ 350
                 99999********************9776.445555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.6e-05
       PAS_7   1 lenmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellrynaergefgagdveaeverrlaaaragkphsfererpdgrvievrgnpl.... 95 
                 l+++ ++++  D+++r++++N    ++ ++++e + vg+p++ell++++ r+    ++     ++  + a    ++    ++ +g+ i+++ + +    
  EHU00188.1 563 LDSIGEAVISTDQAMRVTFMNPVAEKMTGWSQEAA-VGRPVSELLHITHGRHGAPVENLMINPTHSEKTAP-YLSEEWVLHTLNGEHIDIHYTITplks 659
                 7899999***************************9.**********9988877774442222222222222.333344445668888888766554455 PP

       PAS_7  96 ...pdgGfVttytDiTerrr 112
                     ++G V++ +D++e+r+
  EHU00188.1 660 esgTERGAVMVIQDVSESRK 679
                 5557899********99986 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.2   8.5e+03      81     105 ..     586     610 ..     568     615 .. 0.69
   2 !   14.3   0.1   2.7e-05     0.037      21      87 ..     718     804 ..     693     818 .. 0.81
   3 ?   -1.1   0.0       1.6   2.2e+03      35      69 ..     918     953 ..     882     972 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.2
     GGDEF_2  81 arrlgglsvriGiGspveglaglrr 105
                 a+++ g s  +++G+pv++l ++  
  EHU00188.1 586 AEKMTGWSQEAAVGRPVSELLHITH 610
                 5555555666899***999987765 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.7e-05
     GGDEF_2  21 gpyvvvviel...........eedaerllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg.......l 87 
                  ++v v i+l           + ++++ll++l++++r++  + d+l+   gd++ +l+p    ++a+++++r+ r++++       +
  EHU00188.1 718 HQHVLVFIDLdkfkavndsagHAAGDALLSELSDLMRHHlrSTDFLARLGGDEFAVLMPECLVDQARDVVQRIVRAVNDycfewlgR 804
                 568888888866666664433226677*********9999999*******************9999*99999999988855555554 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
     GGDEF_2  35 erllraleeal.ralgpdalvavrgdrlvlllpaed 69 
                  +l ++le+ + +a+ ++ ++a+ +  + l+lp++ 
  EHU00188.1 918 AALKQRLEDNIvEAFFRHRIAAMSQKGIALILPVDV 953
                 446677766664666888899999999999999875 PP

>> Plus-3  Plus-3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00042      0.57      17      62 ..     379     423 ..     372     450 .. 0.76
   2 ?   -0.2   0.0         1   1.4e+03       7      37 ..     910     940 ..     909     955 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
      Plus-3  17 eepffedavkgcfvRvkig.eeretgqpvyrlaqivgvkeeekgkpy 62 
                 e+ +f +  +  +vR+ ++   ++++qp y +aqiv+++e   +++ 
  EHU00188.1 379 EKRYFRKDHEIVWVRLTVSlVRDSEQQPLYFIAQIVNISE--LKQSE 423
                 566777777779*******8444569***********965..44433 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1
      Plus-3   7 lsRskleklleepffedavkgcfvRvkigee 37 
                 l R++l +   ++  ed ++ +f R +i   
  EHU00188.1 910 LLRNNLTDAALKQRLEDNIVEAFFRHRIAAM 940
                 569999999999**************99854 PP

>> PAS_11  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.098   1.4e+02      11      96 ..     323     405 ..     319     418 .. 0.64
   2 ?    5.5   0.0     0.013        17      39      80 ..     476     516 ..     459     530 .. 0.83
   3 ?   -1.4   0.0       1.8   2.5e+03       8      51 ..     573     613 ..     566     675 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.098
      PAS_11  11 dgkIisvDtsaLrasfslglekeelvgrsiydLchpqdlstlkshlrevissngeatssl....yRLrlsqdkfvkvktksklfknqksn 96 
                 +g+ ++v++   +   +lg+++ el ++ ++++ hp+dl   + +  + +    ++++++     R   ++ ++v+v+ +  l ++++++
  EHU00188.1 323 EGRWLQVNK---SLCDTLGYPEYELKNLTFQQITHPDDLGIDDGKMDKLL----AGEILSftleKRYFRKDHEIVWVRLTVSLVRDSEQQ 405
                 566666666...555678999999**************876666666666....333333001133334666777777777777755444 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
      PAS_11  39 siydLchpqdlstlkshlrevissngeatsslyRLrlsqdkf 80 
                 ++ +L+hp+d+    +  ++ i ++  a +  yR + +++++
  EHU00188.1 476 LWIKLVHPDDRAFCVQTIQQAI-EESSAFQMEYRVMREEGHY 516
                 799*******************.899999999**99977765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.8
      PAS_11   8 ldidgkIisvDtsaLrasfslglekeelvgrsiydLchpqdlst 51 
                  d  ++++ +++    a+  +g+++e  vgr + +L+h  + ++
  EHU00188.1 573 TDQAMRVTFMNP---VAEKMTGWSQEAAVGRPVSELLHITHGRH 613
                 566788888888...77888999999999999999999776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 7390.02
//
Query:       EHU00189.1  [L=409]
Description: multidrug efflux system, subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   56.3   1.6    8.6e-15   54.3   0.4    2.5  2  Biotin_lipoyl_2  Biotin-lipoyl like
    1.5e-13   51.3   1.1    1.2e-07   32.4   0.2    2.8  2  HlyD_3           HlyD family secretion protein
    2.1e-13   50.0   2.2    4.5e-13   48.9   2.2    1.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    0.00095   18.9   0.1     0.0044   16.8   0.0    2.2  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.014   15.4   7.0        5.4    7.1   0.1    3.6  3  ChapFlgA         Chaperone for flagella basal body P-ring for
      0.044   13.5   0.4        0.2   11.4   0.0    2.3  3  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
       0.63   10.3   3.0        2.8    8.2   0.1    2.9  3  Peptidase_M23    Peptidase family M23


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.4   3.3e-18   8.6e-15       2      50 .]      84     132 ..      82     132 .. 0.97
   2 ?   -0.6   0.0      0.48   1.2e+03       4      13 ..     194     203 ..     193     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 3.3e-18
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      +v++ ++v+G +++++ ++Gq+VkaGd+Lae+D+r  q+al qa++qla
       EHU00189.1  84 TVTVRSRVDGNLVAIHFTEGQQVKAGDLLAEIDPRPHQVALMQAQGQLA 132
                      69*********************************************96 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.48
  Biotin_lipoyl_2   4 sIaapvsGrV 13 
                       I++p++GrV
       EHU00189.1 194 RITSPIAGRV 203
                      599*****99 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.5e-06    0.0088       1      33 [.      86     118 ..      86     145 .. 0.85
   2 !   32.4   0.2   4.6e-11   1.2e-07       2     101 ..     195     298 ..     194     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiipp 33 
                 t+r+ vdG +v+++ +eg+ v agd l+ei p 
  EHU00189.1  86 TVRSRVDGNLVAIHFTEGQQVKAGDLLAEIDPR 118
                 79****************************983 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 4.6e-11
      HlyD_3   2 lrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik...kkgqkvtlkldqgsdy..tlkgkierisptvdaktgaykvevsl 93 
                 +++p++G+v  ++v  g+++++gd+  l+ i+ +  + v ++v++ ++++i    k g +  +++ + s++    +gk+ +++  +d +tg++k+++++
  EHU00189.1 195 ITSPIAGRVGLKQVDIGNYITSGDTngLVVITQTHPVDVVFSVAENNISQIMqaqKSGEPLLVEAWDRSNQhlIARGKLLSLDNQIDVTTGTIKIKARF 293
                 89*************************************************999999999999998555554588************************ PP

      HlyD_3  94 enpekksi 101
                 +n+   ++
  EHU00189.1 294 DNQ---DD 298
                 **9...33 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   2.2   1.8e-16   4.5e-13      17     214 .]      82     306 ..      70     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.8e-16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXX..........XXXXXXXX.................XXXXXXXX CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaely....spelvaaqeeyllalk..........akkklkkke................lleaarer 85 
                  ++++v +rv+G    ++ + +g++Vk+G+ Lae++       l++aq ++   ++          +                        + +  +e 
  EHU00189.1  82 ANTVTVRSRVDGNLVAIHFT-EGQQVKAGDLLAEIDprphQVALMQAQGQLARDQAtlanarrdlaR-------YqklektslvsqqdldtQNALVSET 172
                 567899*************9.**************73222567889998888877755555555541.......0455555566666665455556677 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXX..X CS
    HlyD_D23  86 LrllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdt..lftiadlstVWveaevyeqqlalv....kvgqkvevtvealpgk..t 176
                 L  ++ +e ++a+    +   ++  +++pi+G V  k+v  G+y++ gdt  l+ i++   V v++ v e++++++    k g++  v+     ++   
  EHU00189.1 173 LGTIKADEGSVASA---QLNLTYSRITSPIAGRVGLKQVDIGNYITSGDTngLVVITQTHPVDVVFSVAENNISQImqaqKSGEPLLVEAWDRSNQhlI 268
                 77777777766555...55556677***********************9999***********************944444566666776666666224 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 177 feGkvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                  +Gk+  ++ ++d +t t+k+ +++dN+d+ L p+ f+
  EHU00189.1 269 ARGKLLSLDNQIDVTTGTIKIKARFDNQDDLLFPNQFV 306
                 69*********************************996 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.7e-06    0.0044      43      73 .]      85     115 ..      83     115 .. 0.95
   2 ?   -2.9   0.0       2.4   6.2e+03      45      68 ..     195     218 ..     194     219 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.7e-06
                    EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +++ ++++G ++ i+  eG++v++gdlla+i
     EHU00189.1  85 VTVRSRVDGNLVAIHFTEGQQVKAGDLLAEI 115
                    7899*************************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
                    EEBSSSEEEEEESSTTTEEE-TTC CS
  Biotin_lipoyl  45 ieapkaGvvkeilvkeGdtvevgd 68 
                    i++p aG+v    v+ G+ +++gd
     EHU00189.1 195 ITSPIAGRVGLKQVDIGNYITSGD 218
                    667777777665555555555554 PP

>> ChapFlgA  Chaperone for flagella basal body P-ring formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.013        33       8      61 ..     104     157 ..      99     169 .. 0.88
   2 ?    6.0   0.5    0.0046        12      31      94 ..     188     253 ..     156     255 .. 0.74
   3 ?    7.1   0.1    0.0021       5.4      83     121 ..     319     360 ..     297     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
    ChapFlgA   8 rpLkrgevitasdlalkkrdlsrlrggvltdeaigkkvkrsiragqpirqnmle 61 
                 +++k+g+ + + d + +++ l + +g++ +d+a+ ++++r +++ q ++++ l 
  EHU00189.1 104 QQVKAGDLLAEIDPRPHQVALMQAQGQLARDQATLANARRDLARYQKLEKTSLV 157
                 678899999999999999*************************99999988875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0046
    ChapFlgA  31 lrggvlt..deaigkkvkrsiragqpirqnmlekpplVkkgqkVtiiarggglsitteGkAlenGa 94 
                 l+  + +  + + g+   +++  g+ i++ + +   ++++   V ++++ ++ +i+   +A+++G+
  EHU00189.1 188 LNLTYSRitSPIAGRVGLKQVDIGNYITSGDTNGLVVITQTHPVDVVFSVAENNISQIMQAQKSGE 253
                 2223333424699999999*******************************************9996 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0021
    ChapFlgA  83 itteGkAlenGaegdqIrVknlq...SgrivkarVtgsgtVe 121
                 + + + Al+ G+eg  + V n++   S+++v+a  ++s++V 
  EHU00189.1 319 VVIPVAALQMGNEGHFVWVINSEdkvSKKTVTAGFQDSQKVV 360
                 667889*************997655699*****999999985 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.9e-05       0.2      79     105 ..      91     117 ..      75     126 .. 0.85
   2 ?   -2.1   0.0       1.2   3.1e+03       3      11 ..     195     203 ..     191     249 .. 0.47
   3 ?   -2.5   0.0       1.6   4.1e+03      81      99 ..     331     349 ..     289     362 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.9e-05
                 TTTTTEEES----SEE-SEEEEEEE-H CS
  PTS_EIIA_1  79 lkgegFellvkegdkVkagdklvevdl 105
                 ++g+   ++ +eg++Vkagd+l+e+d+
  EHU00189.1  91 VDGNLVAIHFTEGQQVKAGDLLAEIDP 117
                 4889999******************97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 -----SEEE CS
  PTS_EIIA_1   3 ilspvsGev 11 
                 i+sp++G+v
  EHU00189.1 195 ITSPIAGRV 203
                 445555543 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.6
                 TTTEEES----SEE-SEEE CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdk 99 
                 + +F   ++++dkV++++ 
  EHU00189.1 331 EGHFVWVINSEDKVSKKTV 349
                 3456777777777777654 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0011       2.8      30      73 ..      73     116 ..      51     129 .. 0.74
   2 ?    1.1   0.1      0.18   4.5e+02      14      46 ..     193     223 ..     178     252 .. 0.71
   3 ?   -2.2   0.1       1.9   4.8e+03      34      41 ..     332     339 ..     307     385 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
                    ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEB CS
  Peptidase_M23  30 kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvg 73 
                     +g+G+v+  +  +  s + ++l +i+  egq+VkaG+ ++++ 
     EHU00189.1  73 LSGLGTVTAANTVTVRSRVDGNLVAIHFTEGQQVKAGDLLAEID 116
                    44667777666666667777888899999***********9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
                    -EEEESSSEEEEEEEEETTTEEEEEEEECTCEE CS
  Peptidase_M23  14 tpVlAaadGtVvfagkkegyGnvviidhgdgys 46 
                    + ++++ +G+V  ++    +Gn++   +++g++
     EHU00189.1 193 SRITSPIAGRVGLKQV--DIGNYITSGDTNGLV 223
                    4689999999955555..356666666665533 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
                    EEEEEEEE CS
  Peptidase_M23  34 Gnvviidh 41 
                    G +v++  
     EHU00189.1 332 GHFVWVIN 339
                    44433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3069.17
//
Query:       EHU00190.1  [L=1040]
Description: MdtB family multidrug transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1159.7  29.6          0 1159.5  29.6    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    1.3e-07   31.2  32.5    1.8e-05   24.2  15.9    2.5  2  SecD_SecF  Protein export membrane protein
  ------ inclusion threshold ------
      0.063   13.9   1.6        3.6    8.3   0.0    4.0  3  DUF883     Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1159.5  29.6         0         0       3    1020 ..      14    1022 ..      12    1023 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1159.5 bits;  conditional E-value: 0
                  HHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS-H CS
    ACR_tran    3 kffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtdi 99  
                  + fi rp+++++l+++ill+Gil+++ lPv+alPe+++pt+qv t ypGasp+ v+s++t+plE+++ +++glk++ SqSs g+s +tl+F+ + ++
  EHU00190.1   14 RQFILRPVATTLLMIAILLAGILGYRFLPVSALPEVDYPTIQVVTLYPGASPDLVTSSITAPLERQFGQMSGLKQMASQSSGGASVVTLQFQLSLPL 110 
                  679********************************************************************************************** PP

                  HHHHHHHHHHHHHHGGGS-HHH.HHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHC CS
    ACR_tran  100 diArqqvqnrlqeaknkLPeev.qepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklak 195 
                  d+A+q+vq+++++a n LP+++ ++p +sk+++++ +i++lavt +  s++ t+++d++et++++++s+v GVg v+l Gg+++avr++++ q+la+
  EHU00190.1  111 DVAEQEVQAAINSASNLLPSDLpNPPVYSKVNPADPPIMTLAVTTT--SMPLTQVQDMVETRVAQKISQVTGVGLVTLTGGQRPAVRVKMNTQALAS 205 
                  **********************999*********************..************************************************* PP

                  TT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSBH CS
    ACR_tran  196 lgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpgana 292 
                  +glt + v++a++++nvn+a+G+l+g ++ ++++a++q++s+ed++++iv +++g++vrl DvA++e+gae+++l a+ n +pa++l+v+++pgan+
  EHU00190.1  206 MGLTSEMVRTAITNANVNSAKGSLDGPTRSVTLSANDQMKSVEDYRQLIVSYKNGAPVRLADVATIEQGAENSWLGAWSNREPAIVLNVQRQPGANI 302 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHH CS
    ACR_tran  293 ievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLf 389 
                  i++a++++++l+ L +slP++v+++ v drt+ +ras+ +++++L++a++Lvv++++lFL+n+ at+ipa+avPlsl+gtfa++++lgfs+N+ltL+
  EHU00190.1  303 IATADNIRAMLPGLIASLPKSVDVKLVTDRTTNIRASVTDTQHELMLAMALVVMIIYLFLRNVPATIIPAVAVPLSLIGTFAAMYFLGFSINNLTLM 399 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH CS
    ACR_tran  390 gLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPalc 486 
                  +L++A+G+vvDdAiVv+Eni+r++e+ gekp+ aalk+++ei++++++++++l+av++P+lf+g+v+G+lfr+fa+t+++ail+s++v+ltltP++c
  EHU00190.1  400 ALTIATGFVVDDAIVVIENISRYIEK-GEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDVIGRLFREFAVTLAVAILISAVVSLTLTPMMC 495 
                  **************************.********************************************************************** PP

                  HHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHHH CS
    ACR_tran  487 allLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkqv 583 
                  a++L++++ +k+++f r+++ +f+++ + Y++ l++vl+h++++l+val +l+l+vll++ ipk f+P++d+g ++ ++++p++vs + +++  ++v
  EHU00190.1  496 ARILSAESLRKQNRFSRASEAMFDRIIAVYGRGLRRVLNHPWLTLSVALGTLLLTVLLWMAIPKGFFPQQDNGIIQGTLEAPQSVSYASMAERTRDV 592 
                  ************************************************************************************************* PP

                  HHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSSS CS
    ACR_tran  584 ekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrselqvklfgd 680 
                  ++++ ++p+v+ +++++G+  +g++ + nsa+++i+Lkp + r   +++  ++ +rl+++++kipg+ + l+a+++l++  +++ +r+ +q++l++ 
  EHU00190.1  593 ASVIMKDPAVQILTSFVGV--DGTNPSLNSARLQINLKPLDMR---SERIPEIQQRLQAQISKIPGVTLWLQAVQDLTI--DTQASRTPYQFTLQSG 682 
                  ******************8..9999****************99...999******************************..888999********** PP

                  HHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGSSSGGGGCC CS
    ACR_tran  681 dleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedlrsspedlkk 777 
                  +l+ Ls+++++ll+al+++p+l dv+s++q++  + ++++dr++a+rlG+s++d++++l  a+g++ ++++++++++++vv+++++    +++ l+ 
  EHU00190.1  683 SLDSLSTWVPALLNALQKHPALRDVSSDWQDQGLEAYIKVDRDSASRLGISMADVDNALYDAFGQRLISTIYTQANQYRVVLEQDNSTMPGLQSLDG 779 
                  ************************************************************************************************* PP

                  SEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHHH CS
    ACR_tran  778 lkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalalll 874 
                  +++ + +g  vplsa+a+i ++++p  i++  +++s++ s+nva+g+sl +a +a++++++++ +p+ v ++++g++ +++ a +s+++l+++a+++
  EHU00190.1  780 IRLNSTDGGSVPLSAIASIAQRHAPLTINHLSQFPSATFSFNVAKGYSLEDATKAINQAETELGMPSEVMTQFQGSTLAFEAALTSTVWLIVAAVVA 876 
                  ************************************************************************************************* PP

                  HHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHHH CS
    ACR_tran  875 vflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTal 971 
                  +++vL++lyes+++p++il+t+P+a vGallal++ g el+++a++G+illiG+++kNai++++fa  +++++g+++ +ai++a++ R+rPiLMT+l
  EHU00190.1  877 MYIVLGVLYESFIHPITILSTLPTAGVGALLALMISGNELDIVAIIGIILLIGIVKKNAIMMIDFALAAEREQGMKPYDAIYQACLLRFRPILMTTL 973 
                  ************************************************************************************************* PP

                  HHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  972 aailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  aa+lG+lPL+lstg+G+el+qplgi+++gGl++s++LtL+++Pv+Y+l+
  EHU00190.1  974 AALLGALPLMLSTGVGAELRQPLGIAMVGGLILSQILTLFTTPVIYLLF 1022
                  ***********************************************98 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2  15.9   3.1e-09   1.8e-05      35     178 ..     347     490 ..     323     500 .. 0.81
   2 !   12.1   8.6   1.5e-05     0.092      29     184 ..     862    1020 ..     837    1024 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHH CS
   SecD_SecF  35 lallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtLt 133
                 l l++alv+++iy++lr      + a+ a+   +i t +++  lg+ ++  t++al    G+ v+d +vv + +   ++k  +++++ +++ + +  +t
  EHU00190.1 347 LMLAMALVVMIIYLFLRNVPATIIPAV-AVPLSLIGTFAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENISRYIEK-GEKPMTAALKGAGEIGFT 443
                 567889999999999986555544444.455679999**************************************99887.8899********999998 PP

                 HHHHTTHH.HHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHH CS
   SecD_SecF 134 rtiltslt.tllvvvallllgg...dslkdfalallvGlivgtyssifi 178
                   i+     ++ v++ ll++g+   +  ++fa++l v++++ ++ s+ +
  EHU00190.1 444 --IISLTFsLIAVLIPLLFMGDvigRLFREFAVTLAVAILISAVVSLTL 490
                 ..55554414555667778877776788999999999999988877655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.5e-05
                  HHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHH CS
   SecD_SecF   29 laekavlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeii 124 
                    ++ v+ +++a+v++ i++++ +e  +    i++ l    + ++ +l + g e+d  ++++++ +iG   ++ +++ d      r+ + ++  ++i
  EHU00190.1  862 ALTSTVWLIVAAVVAMYIVLGVLYESFIHPITILStLPTAGVGALLALMISGNELDIVAIIGIILLIGIVKKNAIMMIDFALAAERE-QGMKPYDAI 957 
                  457889********************98776666636666666777788889***************************99998555.555666666 PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHH CS
   SecD_SecF  125 nlslnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasplll 184 
                   ++    +   ++t+l +ll ++ l+l +g   +  + + +a++ Gli+  + ++f+   + l
  EHU00190.1  958 YQACLLRFRPILMTTLAALLGALPLMLSTGvgaELRQPLGIAMVGGLILSQILTLFTTPVIYL 1020
                  677777788899*************998776657778899********999999998877766 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.28   1.6e+03      63      86 ..     161     184 ..     152     185 .. 0.88
   2 ?    8.3   0.0   0.00059       3.6      43      87 ..     506     550 ..     498     555 .. 0.84
   3 ?    0.4   0.2      0.17     1e+03      80      92 ..     900     912 ..     890     913 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.28
      DUF883  63 eaaddyVrenPwqavGiAagvGll 86 
                  +++d+V+ + +q ++ ++gvGl+
  EHU00190.1 161 TQVQDMVETRVAQKISQVTGVGLV 184
                 578999****************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00059
      DUF883  43 arerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlll 87 
                  ++r+++a+ea+ +r+ ++  +  + V ++Pw ++++A+g  ll 
  EHU00190.1 506 KQNRFSRASEAMFDRIIAVYGRGLRRVLNHPWLTLSVALGTLLLT 550
                 578899999******************************975544 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.17
      DUF883  80 AagvGlllGlLla 92 
                  agvG+ll+l+++
  EHU00190.1 900 TAGVGALLALMIS 912
                 59********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.35s 00:00:01.21 Elapsed: 00:00:00.55
# Mc/sec: 5734.96
//
Query:       EHU00191.1  [L=1025]
Description: MdtC family multidrug transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1154.7  16.2          0 1154.5  16.2    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    1.3e-09   37.5  27.4    2.5e-09   36.5   9.2    2.7  2  MMPL       MMPL family
    8.2e-06   25.3  23.3    0.00032   20.1  11.6    2.6  2  SecD_SecF  Protein export membrane protein
  ------ inclusion threshold ------
       0.25    9.4  14.4       0.36    8.9  14.4    1.1  1  Patched    Patched family
       0.48   10.2   2.0       0.93    9.3   0.1    2.5  2  DUF3094    Protein of unknown function (DUF3094)


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1154.5  16.2         0         0       2    1020 ..       4    1008 ..       3    1009 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1154.5 bits;  conditional E-value: 0
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  +++fi+rp+++++l+l+i+l+Gil+++ lPv+ lP++++p + vs+s+pGaspe+++s+v++plE++l +++g+++++S+Ss g+++i+++F+ ++d
  EHU00191.1    4 FALFIHRPVATTLLTLAIALAGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIIMVFDFNRD 100 
                  689********************************************************************************************** PP

                  HHHHHHHHHHHHHHHGGGS-HHH.HHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHH CS
    ACR_tran   99 idiArqqvqnrlqeaknkLPeev.qepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkla 194 
                  i+ A+++vq+++++a++ LP ++ ++p+++k+++s+++i+++++ts+   +t+ +l+d+a+t+++++Ls+++GVgdv++ G+s +avr++l+pq+l 
  EHU00191.1  101 INGAARDVQAAINAAQSLLPTGMpSRPTYRKANPSDAPIMIMTLTSD--LYTPAQLYDYASTQLAQKLSQINGVGDVTVGGSSLPAVRVALNPQALF 195 
                  ***********************************************..************************************************ PP

                  CTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSB CS
    ACR_tran  195 klgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpgan 291 
                  ++g++l+ v+++++++n++ ++G+le+ ++++++r++++lq+a +++ +iv++++g++vrl DvA+Ve++ ++ r+a++ +gkpavll ++k ++an
  EHU00191.1  196 NQGVSLDAVRQTIANANQRRPQGALEDGQQRWQLRTNDALQTAREYQPLIVQYNNGAAVRLSDVATVEDSVQDVRNAGMSRGKPAVLLVIRKTADAN 292 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHH CS
    ACR_tran  292 aievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltL 388 
                   ie++++++++l+eL+e +P ++++++++dr++++ras+eeV+++L++a+ Lv+lvvf+FL++ ratlipa avP+sl+gtfa+++++gfslN+l+L
  EHU00191.1  293 VIETVDRIRAELPELHEIIPTAIDLQIAQDRSPTIRASLEEVEQSLIIAVGLVILVVFVFLRSGRATLIPAAAVPVSLIGTFAAMYLCGFSLNNLSL 389 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
    ACR_tran  389 fgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPal 485 
                  ++L++A+G+vvDdAiVv+Eni+r++e  g+kpl+aalk+++e+++++++++l+l+avflP+l+ gG++G++f++f++t+++ail+s++v++tltP++
  EHU00191.1  390 MALTIATGFVVDDAIVVLENIARHVES-GMKPLAAALKGVREVGFTVLSMSLSLIAVFLPLLMTGGLIGRFFAEFSITLSVAILISLFVSITLTPMM 485 
                  ***************************.********************************************************************* PP

                  HHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHH CS
    ACR_tran  486 callLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkq 582 
                  ca lLk++  + +  + r   rl+ a++++Ya++l+ vl+h ++v+l+++ +++l+v+lf++ipk+flPe+d+g+l+ ++ +++++s+++++ +l++
  EHU00191.1  486 CAYLLKPHAPRSQ-PRRRGIGRLLLAVQQGYARSLNVVLNHARWVILLLVGTVALTVWLFISIPKTFLPEQDTGRLSGFISADQSISFQAMRGKLQD 581 
                  *********9998.7999******************************************************************************* PP

                  HHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSS CS
    ACR_tran  583 vekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrselqvklfg 679 
                  ++ki+ ++p+v+sv+ +tG       ++ n++ +fisLkp +er   +++++a+i+rlr++l+k pgan+ l a++++r+    +  ++++q+ l  
  EHU00191.1  582 FMKIVGADPDVSSVVGFTGG------MRTNMGLMFISLKPLSER---KDNAQAVIARLRTKLAKEPGANLYLNAVQDIRV--GGREANASYQYSLLT 667 
                  *******************4......899***************...999******************************..888999999999*** PP

                  SHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGSSSGGGGC CS
    ACR_tran  680 ddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedlrsspedlk 776 
                  ddl aL+++++++++a  +lpel+dv+s+qq++  ++ +++dr+++arlG+++s+ n++l+ a+g+++++++++  +++kvv++++ +++++++ l+
  EHU00191.1  668 DDLAALRTWEPKIRQAFTALPELADVNSDQQDQGSEMALTYDRASMARLGINVSEANALLNDAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISSLD 764 
                  ************************************************************************************************* PP

                  CSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHH CS
    ACR_tran  777 klkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalall 873 
                  +++v n++gk +pls +ak++ +++p s++++  s+++++s+n++eg+sls+ +ea++++++++ +p++v+ +++g+a+++q++++s+l+l+ +a+ 
  EHU00191.1  765 QMFVINSDGKPIPLSWFAKWQPANAPLSVNHQGLSAASTLSFNLPEGVSLSQSSEAIDRTMTALGVPSSVRGSFAGTAQAFQQSQSSQLWLMLAAVA 861 
                  ************************************************************************************************* PP

                  HHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHH CS
    ACR_tran  874 lvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTa 970 
                  +v++vL++lyes+++pl+il+t+P a vGallal l+++++s+ia++G++lliG+++kNai++v+fa +++ ++++s +eai++a++ R+rPiLMT+
  EHU00191.1  862 AVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDTPFSLIALIGILLLIGIVKKNAIMMVDFALDAECNGNLSAREAIFQACLLRFRPILMTT 958 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  971 laailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  laa++G+lPL+l +g+G+el+qplgi++ gGl++s++LtL+++Pv+Y+++
  EHU00191.1  959 LAALFGALPLVLTSGDGAELRQPLGITIAGGLIMSQLLTLYTTPVVYLMM 1008
                  ***********************************************986 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   9.2     7e-13   2.5e-09      34     313 ..     229     502 ..     199     529 .. 0.76
   2 !    6.1  10.3    0.0013       4.6      85     305 ..     797    1011 ..     688    1023 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 7e-13
        MMPL  34 laegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaa 132
                 l+++d   ++++++  + +  +    + ++v+ v d    +dv++a +S  + a+ ++++ +   ++   +e+v++ira + e+++  ++++ +   a 
  EHU00191.1 229 LRTNDALQTAREYQPLIVQYNNGAAVRLSDVATVEDS--VQDVRNAGMSRGKPAVLLVIRKT---ADANVIETVDRIRAELPELHEIIPTAIDLQI-AQ 321
                 3355555555555555555555555555666666666..5569***********99999988...6778888899999999999966677777664.56 PP

        MMPL 133 tladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreela 231
                    ++  as +++    ++++ +++++ ++ +rS  a l+p + v vsl+ +++      +l g+ l++ +l+ +  ++ +  +D a+ ++  +   ++
  EHU00191.1 322 DRSPTIRASLEEVEQSLIIAVGLVILVVFVFLRSGRATLIPAAAVPVSLIGTFAA----MYLCGFSLNNLSLM-ALTIATGFVVDDAIVVLENIARHVE 415
                 667778889999999999*************************************....55667777777653.4445566668*************** PP

        MMPL 232 agedreeaviravastgkvvtaaGltvaiamlgLvvarl...pvlaqvGvaialGvlvdvlivlTllPAllvllGraa.la.kprrk 313
                  g +  +a+ + v+ +g +v+   l +++ +l L+++     +++a++ +++++++l+++++++Tl+P ++++l +   +  +prr+
  EHU00191.1 416 SGMKPLAAALKGVREVGFTVLSMSLSLIAVFLPLLMTGGligRFFAEFSITLSVAILISLFVSITLTPMMCAYLLKPHaPRsQPRRR 502
                 ***************************99999999987424489***************************9975554232344444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0013
        MMPL   85 gkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsl 181 
                  g +a  ++++++ +g ++  +s +ai ++ + +  +++++ + +G+a +++     s+++   + +++++ + ++L i+y S v +l +l t     
  EHU00191.1  797 GLSAASTLSFNLPEGVSL-SQSSEAIDRTMTALGVPSSVRGSFAGTAQAFQQ----SQSSQLWLMLAAVAAVYIVLGILYESYVHPLTILST----- 883 
                  555556666665333333.466778888888777888999999999999998....778888888899999999999999999999988755..... PP

        MMPL  182 laalglvlilalllglelstfvlgllvvlliavGtDYallLvsR.yreelaagedreeaviravastgkvvtaaGltvaiamlgLvvar...lpvla 274 
                  l + g+ ++lal l+ +  + ++ + ++lli++    a+++v   +  e + + +++ea+ +a     + +++ +l   +  l Lv+++    +  +
  EHU00191.1  884 LPSAGVGALLALELFDTPFSLIALIGILLLIGIVKKNAIMMVDFaLDAECNGNLSAREAIFQACLLRFRPILMTTLAALFGALPLVLTSgdgAELRQ 980 
                  5566666677777777777788888999999999999999997515556666678889**************9999999999999999733356667 PP

        MMPL  275 qvGvaialGvlvdvlivlTllPAllvllGra 305 
                   +G++ia G++++ l++l  +P +  ++ + 
  EHU00191.1  981 PLGITIAGGLIMSQLLTLYTTPVVYLMMDKL 1011
                  7************998887778777766555 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1  11.6     9e-08   0.00032      33     183 ..     334     482 ..     316     489 .. 0.82
   2 !   10.1   3.8   0.00011      0.38      30     180 ..     849    1002 ..     839    1010 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 9e-08
                 HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHH CS
   SecD_SecF  33 avlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnq 130
                 + ++l+ia+ l++++v++  +   a+ + +a +   +i t +++ l g+ ++  +++al    G+ v+d +vv + +  ++++   ++l+ +++   + 
  EHU00191.1 334 VEQSLIIAVGLVILVVFVFLRSGRATLIPAAaVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHVES-GMKPLAAALKGVREV 431
                 556789999999999999888888877766636678999***************************************99766.556666666555444 PP

                 HHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHH CS
   SecD_SecF 131 tLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiaspll 183
                  +  t+l +   l++v+  ll++g+ +  f + + + l v ++ s+f++ +l 
  EHU00191.1 432 GF--TVLSMSLSLIAVFLPLLMTGGLIGRFFAEFSITLSVAILISLFVSITLT 482
                 44..6999988899998889999999999999999999999999999988775 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHH CS
   SecD_SecF   30 aekavlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiin 125 
                  + + ++ +l+a++++ i++++ +e +v    i++ l +  + ++ +l l+  +++l +++++L +iG   ++ +++ d   +  + + + +++e+i 
  EHU00191.1  849 QSSQLWLMLAAVAAVYIVLGILYESYVHPLTILStLPSAGVGALLALELFDTPFSLIALIGILLLIGIVKKNAIMMVDFALDA-ECNGNLSAREAIF 944 
                  5678999******************998777777588888999999**********************999999999988887.6667888888888 PP

                  HHHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHH CS
   SecD_SecF  126 lslnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifias 180 
                  ++    +   ++t+l +l+ ++ l+l  g   +  + + +++  Gli+  + ++++  
  EHU00191.1  945 QACLLRFRPILMTTLAALFGALPLVLTSGdgaELRQPLGITIAGGLIMSQLLTLYTTP 1002
                  8888888888999999999999998887733333445666666666666666666555 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  14.4    0.0001      0.36     661     805 ..     336     485 ..     325     491 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0001
     Patched 661 qnivlallcmfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekd..dakeRvvealealgwP 757
                 q++++a+ ++++v ++f+ +  + l+ + ++    ig++  + l g  L  +s++++ +++Gf vd +  +  ++ r  ++  ++ + + + + ++g+ 
  EHU00191.1 336 QSLIIAVGLVILVVFVFLRSGRATLIPAAAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHVESgmKPLAAALKGVREVGFT 434
                 899*****************999999888888888*******************************99999999988888666777778888899**** PP

     Patched 758 vvqgalSTilgvlvLlfvdsymvqvFfk...tvvLvvvigllHgLlilPil 805
                 v+  +lS i+  l Ll+    + + F+    t++  ++i+l+  + + P++
  EHU00191.1 435 VLSMSLSLIAVFLPLLMTGGLIGRFFAEfsiTLSVAILISLFVSITLTPMM 485
                 ***********************9999753355556667777777777766 PP

>> DUF3094  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       2.1   7.6e+03      33      52 ..     442     461 ..     433     463 .. 0.73
   2 ?    9.3   0.1   0.00026      0.93      29      47 ..     852     870 ..     846     873 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.1
     DUF3094  33 llvvvlavvigLGllsRlLs 52 
                 l+ v l   ++ Gl+ R+ +
  EHU00191.1 442 LIAVFLPLLMTGGLIGRFFA 461
                 56666777777799999876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00026
     DUF3094  29 rpWlllvvvlavvigLGll 47 
                 + Wl+l +v av i+LG+l
  EHU00191.1 852 QLWLMLAAVAAVYIVLGIL 870
                 67***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1025 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.36s 00:00:01.16 Elapsed: 00:00:00.48
# Mc/sec: 6440.27
//
Query:       EHU00192.1  [L=466]
Description: multidrug efflux system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-56  189.5  62.8    1.2e-50  172.4  44.7    2.0  2  MFS_1     Major Facilitator Superfamily
    1.8e-08   33.2   9.9    1.8e-08   33.2   9.9    2.5  2  MFS_3     Transmembrane secretion effector
    2.9e-06   26.4  14.1    2.9e-06   26.4  14.1    3.5  3  Sugar_tr  Sugar (and other) transporter
    0.00039   19.1   7.2    0.00039   19.1   7.2    2.9  3  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
        0.7    8.9   2.6       0.41    9.7   0.2    1.8  2  TMEM192   TMEM192 family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4  44.7   3.4e-54   1.2e-50       1     352 [.      13     403 ..      13     404 .. 0.92
   2 !   31.0  10.1   3.3e-11   1.2e-07      55     185 ..     318     460 ..     314     465 .. 0.87

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 3.4e-54
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +++++f+ +l+ +i+++a+p  +a+dlg+sp  ++ ++++y l+ av+ ++ G+l+drfG r +++ +++lf++g+ll+ + s+    l+ +rv+qG+g
  EHU00192.1  13 VAFGFFMQTLDTTIVNTAIP-SMAHDLGVSPLHMHSVIVAYVLTVAVTLPLSGWLADRFGVRNIFFSAIVLFSVGSLLCGL-SGTLnQLIMARVIQGIG 109
                 589*****************.9*****************************************************677776.77777************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +++++p+g   + +++p+++ ++a+ ++++  ++G++lgp+lgg+l+++++W+++f+i+ +v+++++v  l llp  + +++r+  +            
  EHU00192.1 110 GAMMVPVGRLTVMRIVPRDQYMSAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIIGAVATLKLLPNYAMPPRRFDFVGFVlladgmatl 208
                 ********************************************************************877888666666666555555577999**** PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                                                   +++  ++l++   +l+ ++ + i l+++l++ +g  +l +++pl+lq  +g+s  + agl++ ++
  EHU00192.1 209 tlaldgqrssggsalllaamiligtgsllfyllhARQNDSALFS--LKLFDNRIFSIGLLGSLTGRIGSGMLPFMTPLFLQIGMGFS-PFHAGLMMIAM 304
                 *******9999999999999999999999999988888888888..6777777665899999999999999****************.8****999999 PP

       MFS_1 254 alvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                  l++++++ ++  +++ +g r+ l+ + ++l+l++l++ l+a+   +v+l lvl+l G+  ++ f+s+++l+ + +p + a + ++l +++ +l++++g
  EHU00192.1 305 VLGNMGMKRVVVSIVNLFGYRNVLVGSTIGLALVVLLFPLVAMLGWTVMLPLVLFLQGMVNAIRFSSMNTLTLKDLPDDLASSGNSLLSMIMQLSMSIG 403
                 99999999999999******************************666666669999*****************************************98 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 3.3e-11
       MFS_1  55 lsdrfGrrrvlllglllfalg.lllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg. 149
                 +++ fG r vl+ + +++al  ll++l+a  +++ +l ++ +lqG+  ++ f+++++l+ +  p++  +++++lls+ ++l++ +g  ++ ll+ ++g 
  EHU00192.1 318 IVNLFGYRNVLVGSTIGLALVvLLFPLVAmLGWTvMLPLVLFLQGMVNAIRFSSMNTLTLKDLPDDLASSGNSLLSMIMQLSMSIGVTVACLLLGAFGh 416
                 6789*****************44444444799**9***************************************************************9 PP

       MFS_1 150 ........Wravfyilaivsllafvlfllllpeepperkrkspk 185
                          + +f+ + + ++l ++l +l++++ p+e +++ + 
  EHU00192.1 417 atsgeqglSHQAFICVYLCMALIIILPALVFWRVPKEMSKSVDL 460
                 99999998677777666666666778899999999998887655 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   9.9   5.1e-12   1.8e-08      22     176 ..      20     169 ..       4     192 .. 0.84
   2 ?   -1.2  12.2      0.14   4.9e+02      47     171 ..     297     419 ..     252     458 .. 0.62

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 5.1e-12
       MFS_3  22 snlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaaln 120
                   l t i + a+  +  d+  spl +  v +a  L + +   l+G laD f  R++++ + +l  ++s+l  ++ +l+      l++  ++ giG a++
  EHU00192.1  20 QTLDTTIVNTAIPSMAHDLGVSPLHMHSVIVAYVLTVAVTLPLSGWLADRFGVRNIFFSAIVLFSVGSLLCGLSGTLN-----QLIMARVIQGIGGAMM 113
                 4455556666777777888899999999999999999888889*****************999999998776665554.....57888999******** PP

       MFS_3 121 dPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavna 176
                  P  + +v  +v+r++  +A++  ++   i    GPAlgGvlv  +   + f +n 
  EHU00192.1 114 VPVGRLTVMRIVPRDQYMSAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINI 169
                 ****************************************************9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.14
       MFS_3  47 vAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLns 145
                   l+ +a  L  + +  ++  + + f  R+vl+   + lalv +l  ++a+lg +   +l  + +l g+  a+   + +  +   ++ +  ++   L s
  EHU00192.1 297 AGLMMIAMVLGNMGMKRVVVSIVNLFGYRNVLVGSTIGLALVVLLFPLVAMLGWTV--MLPLVLFLQGMVNAIRFSSMNTLTLKDLPDDLASSGNSLLS 393
                 33333444444444444444455666677777777777777777766777766643..33334566777777777777777766677777777777777 PP

       MFS_3 146 vginiaRsvGPAlgGvlvaavGaala 171
                 + + ++ s+G  ++ +l+ a+G a++
  EHU00192.1 394 MIMQLSMSIGVTVACLLLGAFGHATS 419
                 77777777777777777777776653 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4  14.1     8e-10   2.9e-06       5     189 ..      13     180 ..       9     192 .. 0.84
   2 ?   -2.3   7.6      0.41   1.5e+03     277     334 ..     281     342 ..     241     360 .. 0.69
   3 ?    1.1   2.4     0.039   1.4e+02     323     380 ..     400     456 ..     391     459 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8e-10
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-T CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsve 103
                 +a+g +++  dt ++++++ +++   + g+s  +         +  +  ++++  +++  ++g+l+drfG ++++  a+vlf++g++l++++    ++ 
  EHU00192.1  13 VAFGFFMQTLDTTIVNTAIPSMA--HDLGVSPLH---------MHSVIVAYVLTVAVTLPLSGWLADRFGVRNIFFSAIVLFSVGSLLCGLSG---TLN 97 
                 56666777777777777777666..222332222.........3346667888889999**********************************...9** PP

                 GGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 104 vlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 +li++Rv+ Gig  +   +  +++  i p +     +++  l  ++G l++  +g +l ++ +   w++ + +++   ++ +++ l
  EHU00192.1  98 QLIMARVIQGIGGAMMVPVGRLTVMRIVPRDQYMSAMTFVTLPGQIGPLLGPALGGVLVEYAS---WHWIFLINIPVGIIGAVATL 180
                 ***************999*************9999999*************************...99999999999988777665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.41
                 TTTHHHHSS-THH....HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 277 sptifenlglsks....llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvil 334
                  + +f ++g+  s     l+ i ++  n+ +  v++ +v  fG R++l+ +++g a++ +++
  EHU00192.1 281 MTPLFLQIGMGFSpfhaGLMMIAMVLGNMGMKRVVVSIVNLFGYRNVLVGSTIGLALVVLLF 342
                 4567778888777767756677777779999999999********87766666666555444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSH CS
    Sugar_tr 323 GaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfp 380
                  ++g ++++++lg ++   ++++++ s  a ++++l +al  + ++ v+w +  E++ 
  EHU00192.1 400 MSIGVTVACLLLG-AFGHATSGEQGLSHQAFICVYLCMALIIILPALVFWRVPKEMSK 456
                 4566677777776.55555555578888888888888899999999999999999875 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   7.2   1.1e-07   0.00039     225     343 ..       9     125 ..       1     133 [. 0.84
   2 ?    0.0   0.5     0.067   2.4e+02     259     310 ..     191     244 ..     157     253 .. 0.72
   3 !    5.3  19.6    0.0017       6.1     219     419 ..     254     446 ..     251     451 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-07
       MFS_2 225 aflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllv 322
                 +++i++++f++++l +++ n++    + + lg +   +  + ++ ++ +++++pl  +la r+g +n+++++++l  v+++l+ l   + l  ++++ v
  EHU00192.1   9 QLWIVAFGFFMQTLDTTIVNTAIP-SMAHDLGvSPLHMHSVIVAYVLTVAVTLPLSGWLADRFGVRNIFFSAIVLFSVGSLLCGLS--GTLNQLIMARV 104
                 89*******************998.57777888**********99**********************************9999998..66666777777 PP

       MFS_2 323 iagfgvgvaallpwsmladvv 343
                 i g+g ++++ +   +++ +v
  EHU00192.1 105 IQGIGGAMMVPVGRLTVMRIV 125
                 777777777777776666666 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.067
       MFS_2 259 saasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll..q 310
                 + ++++ +v+ + +++++ l+   ++  g  ++ l++++l   +++l++ll  +
  EHU00192.1 191 RRFDFVGFVLLADGMATLTLALDGQRSSGGSALLLAAMILIGTGSLLFYLLhaR 244
                 567777777788888888888888888888888888888888888888888433 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0017
       MFS_2 219 evfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgal...ltivllvlvlllqpsn 313
                 ++f+nr f i ll+ l+   + g+l   + ++l+  +g + + a +++++++++++ +  ++  ++  +g +n+ + +++   l+++l+ lv +l  + 
  EHU00192.1 254 KLFDNRIFSIGLLGSLTGRIGSGMLPFMTPLFLQIGMGfSPFHAGLMMIAMVLGNMGMKRVVVSIVNLFGYRNVLVGSTIglaLVVLLFPLVAML-GWT 351
                 689999999999999999999*************************************************9999876654211333344444444.899 PP

       MFS_2 314 lllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqspqvvlalrllyavlpavl 412
                 ++l lvl++ +++ ++ + ++ + +l d+ D+ +        ++  ++ls+i +l + ig+ v+ llL+afg  a++++q  + ++ + + ++++  ++
  EHU00192.1 352 VMLPLVLFLQGMVNAIRFSSMNTLTLKDLPDDLA--------SSGNSLLSMIMQLSMSIGVTVACLLLGAFGH-ATSGEQGLSHQAFICVYLCMA--LI 439
                 9999999999999999999999999999999987........78899************************99.666666665555444444432..33 PP

       MFS_2 413 llvalll 419
                 +++ +l+
  EHU00192.1 440 IILPALV 446
                 3333333 PP

>> TMEM192  TMEM192 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       0.8   2.9e+03     105     123 ..      41      59 ..      35      63 .. 0.77
   2 ?    9.7   0.2   0.00011      0.41     102     165 ..     377     448 ..     370     452 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.8
     TMEM192 105 lpLiivSlgnavLLlvlav 123
                  pL ++S   a +L+v+++
  EHU00192.1  41 SPLHMHSVIVAYVLTVAVT 59 
                 7899999999999988765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00011
     TMEM192 102 lkrlpLiivSlgnavLLlvlavlrslykkek........aeqalsealspllfvliilllEllvllivlviY 165
                 lk lp  ++S+gn +L +++++  s+  +             + +++ls++ f+++ l++ l+++l++lv +
  EHU00192.1 377 LKDLPDDLASSGNSLLSMIMQLSMSIGVTVAclllgafgHATSGEQGLSHQAFICVYLCMALIIILPALVFW 448
                 6666667788888888888888877777777888888876667899**********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3544.44
//
Query:       EHU00193.1  [L=462]
Description: sensory histidine kinase in two-component regulatory system with BaeR [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-22   79.7   0.0    9.6e-22   77.6   0.0    2.0  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.9e-15   54.8   1.7    4.7e-14   52.5   0.1    2.8  3  HAMP         HAMP domain
      4e-12   46.0   0.4    1.1e-11   44.6   0.4    1.8  1  HisKA        His Kinase A (phospho-acceptor) domain
     0.0036   17.2   0.0     0.0088   16.0   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.28   11.1   0.0    1.4  1  HATPase_c_5  GHKL domain
        0.6   10.8   2.7         63    4.3   0.0    3.5  4  SlyX         SlyX


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   3.9e+03      50      88 ..     146     184 ..     142     201 .. 0.72
   2 !   77.6   0.0   3.2e-25   9.6e-22       1     108 [.     348     456 ..     348     459 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
                 TTHHHTGTCS.TTCHHCSTCHTSTSSSHHHHHHHH.HHH.HT CS
   HATPase_c  50 pkedlkklfe.kfsqddstkrggggtGlGlsivkk.lve.lm 88 
                 p+e l ++ + +f+q   ++r+++   +Gls   + lv+ lm
  EHU00193.1 146 PPERLTRSTDiNFDQ---QQRRTSWYIVGLSTLLAaLVTwLM 184
                 888889999999999...555555555666666555665455 PP

  == domain 2  score: 77.6 bits;  conditional E-value: 3.2e-25
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd++rL+q+++nl++N+++++  +ge++v++  +  + +++veD+ +G+  +++ ++fe+f + ++s++r +gg+GlGl+i+k++v+ +gG+i+ +  +
  EHU00193.1 348 GDPDRLMQLFINLLENSLRYTDAGGEVRVRLWYDAPYWHVTVEDSAPGVEGDQQAQIFERFFRtEGSRNRASGGSGLGLAICKNIVDAHGGSISASHAD 446
                 799*****************779*********9878***************************999****************************98888 PP

                 TTEEEEEEEE CS
   HATPase_c  99 grGttftftl 108
                  +G ++ ++l
  EHU00193.1 447 LGGLKIALQL 456
                 7787776665 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.1   1.6e-17   4.7e-14       1      52 [.     183     234 ..     183     235 .. 0.97
   2 ?   -0.3   0.1      0.49   1.5e+03       6      42 ..     251     289 ..     247     296 .. 0.72
   3 ?   -1.3   0.0         1     3e+03      18      28 ..     318     328 ..     316     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.6e-17
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 l+ar +l+P++rL++ + ++aaG+l tr+ v+++DE+G+La+ fN ++ +L+
  EHU00193.1 183 LMARGLLAPVKRLVDGTHHLAAGNLATRVKVDSQDELGQLAHDFNLLASSLE 234
                 68*********************************************99997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.49
                 THHHHHHHHHHHHHHTTT..BTSSTCCTTSSSHHHHHHH CS
        HAMP   6 ilrPLrrLaraarriaaG..dldtrlpvsgrDEiGeLar 42 
                 +  PL  L+   +++++G   l+++  +s + E++ L +
  EHU00193.1 251 LRTPLAILRGELEAMQDGvrKLTPDAITSLQSEVALLTK 289
                 557888899999999999876666666678888888876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1
                 HHHTTTBTSST CS
        HAMP  18 rriaaGdldtr 28 
                  +i+aG++++r
  EHU00193.1 318 IEISAGNFTER 328
                 5899****999 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.4   3.7e-15   1.1e-11       1      65 [.     239     301 ..     239     303 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 3.7e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 +++ f+a+++HELrtPL+ ++g +ea+++    +    +++ +++se+  l++lv+dl +ls  +
  EHU00193.1 239 MRRAFMADISHELRTPLAILRGELEAMQDG--VRKLTPDAITSLQSEVALLTKLVDDLHQLSLSD 301
                 6899*************************5..7899999*******************9998765 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.9e-06    0.0088      52     111 ..     369     435 ..     356     447 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
  HATPase_c_2  52 p.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvDe 111
                     g+v+vrl++d+   +v+v+Ds+pg +  ++++  e           +     +G+Gla+ k++vD 
   EHU00193.1 369 DaGGEVRVRLWYDAPYWHVTVEDSAPGVEGDQQAQIFE--RffrtegsrNRASGGSGLGLAICKNIVDA 435
                  33699**********************77766555433..2356667668888999***********97 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.4e-05      0.28       5      90 ..     352     445 ..     349     448 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.4e-05
  HATPase_c_5   5 dlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg.......ek..kkle....sskskkeehGiGlksireivkkykgnlsiea 89 
                   l+ ++ nlL+N++   ++      ++r+ ++++     +++e s  g       ++  + ++    s+++ ++  G+Gl   ++iv+ ++g++s ++
   EHU00193.1 352 RLMQLFINLLENSLRYTDAGG----EVRVRLWYDAPYWHVTVEDSAPGvegdqqaQIfeR-FFrtegSRNRASGGSGLGLAICKNIVDAHGGSISASH 444
                  5889999*****998777755....69999999999999999999888666644322632.22344577888999******************99876 PP

  HATPase_c_5  90 e 90 
                  +
   EHU00193.1 445 A 445
                  5 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.021        63      27      66 ..      63      99 ..      55      99 .. 0.87
   2 ?   -0.1   0.0      0.49   1.5e+03      27      53 ..     213     239 ..     210     254 .. 0.79
   3 ?   -1.0   0.0      0.92   2.7e+03      11      43 ..     240     272 ..     238     274 .. 0.71
   4 ?    3.5   0.1     0.037   1.1e+02       4      24 ..     276     296 ..     273     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.021
                HHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXX CS
        SlyX 27 aeqqqqidrlqrqlrllaerlkeleessgaseaeeepPPH 66
                +eq+ + d l+   rl+   l++le++     + ++ PPH
  EHU00193.1 63 YEQHGDWDFLRNNDRLIFSMLRSLEQNPD---SSNQLPPH 99
                78999999999999999999999999954...489***** PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  27 aeqqqqidrlqrqlrllaerlkelees 53 
                 ++ q+++ +l + ++lla  l++ e+ 
  EHU00193.1 213 VDSQDELGQLAHDFNLLASSLEKNESM 239
                 567999999999999999999776654 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.92
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  11 klafqedtieeLndvvaeqqqqidrlqrqlrll 43 
                 + af+ d   eL   +a  + +++++q  +r+l
  EHU00193.1 240 RRAFMADISHELRTPLAILRGELEAMQDGVRKL 272
                 567777777777777777777777777777776 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHHHHHHHHH CS
        SlyX   4 rleeLEiklafqedtieeLnd 24 
                  ++ L++++a + +++++L +
  EHU00193.1 276 AITSLQSEVALLTKLVDDLHQ 296
                 688999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3288.53
//
Query:       EHU00194.1  [L=235]
Description: DNA-binding response regulator in two-component regulatory system with BaeS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-28   98.2   0.0    4.5e-28   97.7   0.0    1.3  1  Response_reg  Response regulator receiver domain
    1.2e-23   82.9   0.0    2.3e-23   82.1   0.0    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0     5e-32   4.5e-28       1     111 [.      10     118 ..      10     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 5e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+v+D+p++++l+ ++le ++y +++  ++g++ l+++k+  +dlillD+++pg dGl+l++eir+++ +lp+i++ta++ee d+  +l++gadd+
    EHU00194.1  10 ILVVEDEPKLAQLMIDYLEASNY-RTHHLAHGNAILDYVKQTPPDLILLDLMLPGKDGLTLCREIRRDS-DLPIIMVTARTEEIDRLLGLEIGADDY 104
                   8**********************.*******************************************87.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   + Kpf+p+e+++++
    EHU00194.1 105 ICKPFSPREVVARV 118
                   **********9998 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   2.5e-27   2.3e-23       2      76 ..     152     226 ..     151     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 2.5e-27
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  e+++ltp ef+lL++L  +pg+v+sre+Ll++++++   v+drt+d+hi++LR+kLe   +++ +I+ v+g+GYr
   EHU00194.1 152 EPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDSEQPFIRAVYGMGYR 226
                  799********************************************************99999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1822.20
//
Query:       EHU00195.1  [L=457]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-96  320.8   0.0    5.1e-96  320.3   0.0    1.2  1  Peptidase_U32    Peptidase family U32
    7.3e-19   67.8   0.0      2e-18   66.4   0.0    1.8  1  Peptidase_U32_C  Peptidase family U32 C-terminal domain
  ------ inclusion threshold ------
          3    7.9   6.7       0.13   12.2   0.6    1.8  2  Tachystatin_B    Antimicrobial chitin binding protein tachyst


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.3   0.0  8.6e-100   5.1e-96       1     231 [.      74     342 ..      74     344 .. 0.98

  Alignments for each domain:
  == domain 1  score: 320.3 bits;  conditional E-value: 8.6e-100
  Peptidase_U32   1 leklrkyleklaelgvdavivqDpgvlelareeapelelhlStqanitnseavrflkelGasrvvlaRElsleeikaikekvpdvelEvfvhGalc 96 
                    l+++ + l+++ e+++da+i++Dpg+++l+re +p +++hlS+qan++n+++v+f++++G srv+l+RElsleei++i+e+vpd+elEvfvhGalc
     EHU00195.1  74 LKTFIRDLTPVIEMQPDALIMSDPGLIMLVREAFPAMPIHLSVQANAVNWATVKFWQQMGLSRVILSRELSLEEIADIREQVPDMELEVFVHGALC 169
                    578889999*************************************************************************************** PP

  Peptidase_U32  97 vaysGrcllssylsgrsanrgecaqpcrldyr.......................................lieekekgeeepieedekgtyllsp 153
                    +aysGrclls y+++r++n+g c+++cr++y+                                       l+e+ ++ge+++ +ede+gty++++
     EHU00195.1 170 MAYSGRCLLSGYMNKRDPNQGTCTNACRWEYQlqearqddvgniveihqpvsvqdvtptlgigqpsdkvflLEEKMKPGEMMSAFEDEHGTYIMNS 265
                    **********************************************************************767777******************** PP

  Peptidase_U32 154 kdlclieelpelleaGvdslKIeGRmkspeyvatvvrvYreaidallagreevkeelkeeleklanrgltsgfllgrk 231
                    kdl+++ ++++l ++Gv+slKIeGR+ks +y+a++++vYr+aid+++ag+ +++++l e le la+rg+t+gfl +++
     EHU00195.1 266 KDLRAVAHVERLSQMGVHSLKIEGRTKSYYYCARTAQVYRKAIDDAAAGK-PFDSALLETLEGLAHRGYTEGFLRRHT 342
                    **************************************************.***********************9987 PP

>> Peptidase_U32_C  Peptidase family U32 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   3.4e-22     2e-18       2      82 .]     358     439 ..     357     439 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 3.4e-22
  Peptidase_U32_C   2 eydfvGevlsydeeglaeveqRNkfsvGdelEvltPkgenveftveelydedgeeievaphpgqkvkikl.p.velepgdilR 82 
                      +++fvGe+ +++ eg+aev ++Nkf   d+lE++tP+g n   t+++l++  ge+ evap+ g++v++k+ p v+l  + +lR
       EHU00195.1 358 RQQFVGEFSGEQREGWAEVRVKNKFVLHDSLEIMTPSG-NLICTLDALQNSRGEPTEVAPGDGHRVWMKVpPeVDLRFALLLR 439
                      79*******666678***********************.******************************95456666777766 PP

>> Tachystatin_B  Antimicrobial chitin binding protein tachystatin B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   2.2e-05      0.13       6      29 ..     164     187 ..     160     197 .. 0.82
   2 ?   -3.2   0.8       1.4   8.4e+03      23      27 ..     295     299 ..     289     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
  Tachystatin_B   6 frGarCrvysGrsCCfGyyCrrdf 29 
                      Ga C  ysGr    Gy  +rd 
     EHU00195.1 164 VHGALCMAYSGRCLLSGYMNKRDP 187
                    57********************94 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
  Tachystatin_B  23 yyCrr 27 
                    yyC r
     EHU00195.1 295 YYCAR 299
                    99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3310.45
//
Query:       EHU00196.1  [L=299]
Description: diacylglycerol kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-28   96.5   0.3    1.4e-27   95.8   0.3    1.3  1  DAGK_cat      Diacylglycerol kinase catalytic domain
    9.2e-05   21.8   0.1    0.00015   21.1   0.1    1.4  1  NAD_kinase    ATP-NAD kinase
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.018   14.7   0.0    1.1  1  Peripla_BP_6  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.3   2.3e-31   1.4e-27       3     126 .]       8     129 ..       7     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 2.3e-31
                 EEEE-TTCTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCT.HHCTTSEEEEEE-SS--HHHHHC CS
    DAGK_cat   3 lvivNpksGkgkgekllrkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglle.elatkpplgiiPlGtgNdlaral 100
                 l+i+N   Gkg+g++ lr++  +l+ +g+++ ++ t e+gd++++++ea e +++++v+ GGDGtv+e++ +l+  +++++p lgi+PlGt+Nd+a ++
  EHU00196.1   8 LLILN---GKGAGNDDLREAITKLRAEGFNIAVRVTYEKGDGERYVEEALELQAETVVAGGGDGTVNEIATALASvNADERPVLGILPLGTANDFATSV 103
                 67888...9999*************************************************************************************** PP

                 T--SSHHHHHHCHHCTBEEEEEEEEE CS
    DAGK_cat 101 gigkdieealesiikgetrkvdvgkv 126
                 gi+++ie+al+ +i+g++ ++d+++v
  EHU00196.1 104 GIPEEIEHALRLAIQGKACDIDLARV 129
                 **********************9876 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.5e-08   0.00015      65     135 ..      41     120 ..      10     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-08
                 ....EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH...CT-EEEEE.ESSS--.SS-SE.EGGGHHHHHHHHHHT- CS
  NAD_kinase  65 d...dtrkaleafadagvdliivvGGDGTaldvarllqk...aeiPvlgv.naGvkg.fltef.epeaaaellekllege 135
                     d ++ +e+  + +++ +++ GGDGT+ ++a++l+    +e Pvlg+ ++G+++ f t +  pe++  +l+  ++g+
  EHU00196.1  41 YekgDGERYVEEALELQAETVVAGGGDGTVNEIATALASvnaDERPVLGIlPLGTANdFATSVgIPEEIEHALRLAIQGK 120
                 2446888999999*********************99987666899****8799998757777789999999999888865 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     3e-06     0.018     156     233 ..      25     100 ..       7     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3e-06
                   HHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHH CS
  Peripla_BP_6 156 kaaakaaGgevvgeepvplgttdfsaqvlqikaagadavllagtgadlaallkaaaeaGldakrillvswsgseedlk 233
                      ++a+G+++   ++v+ +  d + +v ++ + +a++v+++g+ +++  +++a+a+++ d +++l++ + g+++d +
    EHU00196.1  25 ITKLRAEGFNIA--VRVTYEKGDGERYVEEALELQAETVVAGGGDGTVNEIATALASVNADERPVLGILPLGTANDFA 100
                   345788999985..89999999******************999999999999999************99999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2194.46
//
Query:       EHU00197.1  [L=292]
Description: D-mannonate oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-88  294.5   0.0    6.9e-88  294.3   0.0    1.0  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.3   0.0   3.9e-92   6.9e-88       2     246 .]      19     265 ..      18     265 .. 0.99

  Alignments for each domain:
  == domain 1  score: 294.3 bits;  conditional E-value: 3.9e-92
  Mannitol_dh_C   2 svgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGyq 97 
                    +++fp+tmVDRIvpa+ +    +l + +g  Dp+av +EpF qWvied+fv grp+++++g+elvedv p+e++Klr+LNg+H++laylg+laGy+
     EHU00197.1  19 NITFPSTMVDRIVPAMNEAAFDALRARIGSSDPVAVEAEPFFQWVIEDHFVSGRPDWDKAGAELVEDVLPFEQMKLRMLNGSHSFLAYLGYLAGYE 114
                    79********************************************************************************************** PP

  Mannitol_dh_C  98 tiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalwir 193
                    +i+++m+d+++ra++++l+ +e+ap+l   +++dl++Yad++i+RF+N +i++++ ++a dG qklp+r l+s+r+++++gt   ll lg+a+w+r
     EHU00197.1 115 HISDCMADDAFRAAARALMVNEQAPTLTT-QGVDLPAYADALIARFANRAIRHRTYQIATDGTQKLPQRFLDSVRWHLANGTPCPLLLLGIAAWMR 209
                    *****************************.****************************************************************** PP

  Mannitol_dh_C 194 ylegvaeggnyiekeDpqleelqe...aallakervkavlaekeileedlaqnkel 246
                    y+  v+e+g++i+++Dp  ++l+    ++++++erv a+l  k++++edla+n  +
     EHU00197.1 210 YVGAVDEKGEPIAIRDPLKAQLATcvaESAEGQERVRALLGLKTVFGEDLADNTAF 265
                    *********************9999888999*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2148.99
//
Query:       EHU00198.1  [L=228]
Description: GntR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-20   72.7  14.3    5.3e-20   72.1  14.3    1.3  1  FCD        FCD domain
    5.2e-18   64.5   1.0    1.1e-17   63.4   0.0    2.0  2  GntR       Bacterial regulatory proteins, gntR family
     0.0016   18.5   0.3      0.013   15.5   0.0    2.4  2  HTH_20     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.095   12.3   0.0       0.29   10.7   0.0    1.9  1  HTH_24     Winged helix-turn-helix DNA-binding
       0.13   12.5   0.9        2.1    8.6   0.0    2.9  3  DUF3253    Protein of unknown function (DUF3253)
       0.17   12.1   1.7       0.39   10.9   0.8    2.1  2  AAA_lid_6  AAA lid domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1  14.3   1.8e-23   5.3e-20       5     124 ..      89     208 ..      87     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.8e-23
         FCD   5 lRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeHrai 103
                 +R+++E +++r+aar  +++ l +le+ l+ +++ aa+gd + f+ +d +FHr++ae  +  + +e++e++ a + r+r+l+l   +++e  +++H+a+
  EHU00198.1  89 IREAVELAVIRRAARETSQRGLMALEHNLQLQRITAARGDSQMFFSLDDEFHRLIAESIDCMLAWETIENIKATMDRVRYLTLNQVAPAETLIEQHEAV 187
                 7************************************************************************************************** PP

         FCD 104 ldAirardadaAraamrrHle 124
                 ++A++ardad+A++a+r+Hl+
  EHU00198.1 188 FAALKARDADQAETALRHHLQ 208
                 *******************98 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   3.7e-21   1.1e-17       3      64 .]      15      75 ..      13      75 .. 0.98
   2 ?   -1.4   0.2      0.65     2e+03      36      54 ..      93     111 ..      89     116 .. 0.72

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.7e-21
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +q+y++Lr dI++ +++pG+ L se+e++a+f+ sr++vReA ++L+++glv++ ++rGtfV
  EHU00198.1 15 QQIYRYLRKDIVTCVIQPGALL-SEKEVSARFHLSRQPVREAFIKLAEAGLVQILPQRGTFV 75
                89********************.**************************************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.65
                 S-HHHHHHHHHHHHHTTSE CS
        GntR  36 VsrttvReALrrLeaeglv 54 
                 V   ++R+A r+ +++gl 
  EHU00198.1  93 VELAVIRRAARETSQRGLM 111
                 5667788888887777775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.5e-06     0.013       7      54 ..       9      65 ..       5      71 .. 0.94
   2 ?    0.2   0.3      0.27   8.2e+02      34      48 ..     196     210 ..     160     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.5e-06
                HS-HHHHHHHHHH.........STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
      HTH_20  7 LahPvRrrilraL.........araegltaselaerldlskntlsyHLrvLeeagLv 54
                +++Pv   i+r+L          +++ l+ +e+ +r+ ls++ ++  + +L+eagLv
  EHU00198.1  9 TSEPVNQQIYRYLrkdivtcviQPGALLSEKEVSARFHLSRQPVREAFIKLAEAGLV 65
                466*****************************************************9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
                 HTS-HHHHHHHHHHH CS
      HTH_20  34 ldlskntlsyHLrvL 48 
                  d + + l++HL+++
  EHU00198.1 196 ADQAETALRHHLQAM 210
                 356677799999875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.6e-05      0.29      18      47 ..      36      65 ..      13      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.6e-05
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlI 47
                +s +e++ r +lS+++v++   +L e+Gl+
  EHU00198.1 36 LSEKEVSARFHLSRQPVREAFIKLAEAGLV 65
                7889************************98 PP

>> DUF3253  Protein of unknown function (DUF3253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00071       2.1      38      67 ..      45      75 ..      11      88 .. 0.80
   2 ?   -0.3   0.1      0.43   1.3e+03      42      57 ..      95     110 ..      90     116 .. 0.84
   3 ?    0.3   0.0      0.28   8.4e+02      36      66 ..     157     187 ..     143     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00071
                -GGGHHHHHHHHHHHHHTTSEEEE.ETTEE- CS
     DUF3253 38 WrelmekvRevavrlaaaGeveil.qkGkvv 67
                ++   ++vRe+ ++la+aG v+il q+G+ v
  EHU00198.1 45 FHLSRQPVREAFIKLAEAGLVQILpQRGTFV 75
                5556689****************87899887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.43
                 HHHHHHHHHHHHHTTS CS
     DUF3253  42 mekvRevavrlaaaGe 57 
                 +  +R++a++  ++G 
  EHU00198.1  95 LAVIRRAARETSQRGL 110
                 6779999999999985 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
                 TS-GGGHHHHHHHHHHHHHTTSEEEEETTEE CS
     DUF3253  36 eeWrelmekvRevavrlaaaGeveilqkGkv 66 
                 e+ +++m++vR + ++ +a  e  i q+  v
  EHU00198.1 157 ENIKATMDRVRYLTLNQVAPAETLIEQHEAV 187
                 5667899999999988888888888777655 PP

>> AAA_lid_6  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   0.00013      0.39      23      58 ..      86     123 ..      71     125 .. 0.77
   2 ?   -1.6   0.0       1.1   3.3e+03       1      13 [.     197     209 ..     197     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
   AAA_lid_6  23 ARfVRnllekairrqadRlatt.....ddseltredlmtLt 58 
                 +Rf+R  +e a+ r+a R +++             +l+++t
  EHU00198.1  86 GRFIREAVELAVIRRAARETSQrglmaL---EHNLQLQRIT 123
                 9*****************9998664322...2333466666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
   AAA_lid_6   1 eeAeevlreller 13 
                 ++Ae +lr +l+ 
  EHU00198.1 197 DQAETALRHHLQA 209
                 6799999999873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1817.78
//
Query:       EHU00199.1  [L=266]
Description: hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-91  304.7   0.0    4.8e-91  304.5   0.0    1.0  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
     0.0055   16.1   0.0     0.0082   15.5   0.0    1.2  1  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.5   0.0   5.4e-95   4.8e-91       1     246 []      13     260 ..      13     260 .. 0.98

  Alignments for each domain:
  == domain 1  score: 304.5 bits;  conditional E-value: 5.4e-95
                   ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHHTTS.SEEEE---S CS
  Phos_pyr_kin   1 DssGGAGiqADlktfsalgvygmsvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkkykv.pvVlDPVmv 96 
                   D+sGGAGiqADlktfsalg+yg+svital+aqnt+gv++v+ +++++v+aql++vl+dv++d +KiGml++a+i+e va+ l+++++  vVlD Vmv
    EHU00199.1  13 DPSGGAGIQADLKTFSALGAYGTSVITALVAQNTCGVQSVYRIDPDFVSAQLDSVLDDVRIDSAKIGMLSDAAIVERVAAGLQRRAIpFVVLDTVMV 109
                   9***********************************************************************************99999******** PP

                   SCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT.---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE--- CS
  Phos_pyr_kin  97 aksgselleeeavealkeeLlplatvitPNlpEaeaLlg.ekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerie 192
                   aksg++ll+++a++ ++e+Llp++++itPNlpEa+aLl+ + +++e++m +++++ll+lg++aVl+kGghl++ e+   d+l++  + ++++++r++
    EHU00199.1 110 AKSGDALLSPDAIACVRERLLPQVSLITPNLPEAAALLEcRMASNENEMLTQGDALLALGCQAVLMKGGHLDHGESP--DWLITPAGRQRFSTPRVK 204
                   ***************************************77778999************************877777..****************** PP

                   -S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHH..CG-BSTSSS-B-- CS
  Phos_pyr_kin 193 tknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaik..ealelgkgagpvn 246
                   t++thGtGCtls+a+aa   ++ ++ e+v++Ak+++++a+   ++le+g+g gpv+
    EHU00199.1 205 TRHTHGTGCTLSAALAALRPRHSDWAETVNEAKTWLQQALLtaDSLEVGHGTGPVH 260
                   ***************************************98889**********96 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.2e-07    0.0082     177     280 ..     126     234 ..     101     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.2e-07
                 HHHHHCTESEEEEEHHHHHHHHTSCT.HSHHHHHHHHHHHHHTTSSEEEEE.....EGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHH CS
        PfkB 177 llellaladllkpneeElealtgekl.edieealaalhklkakgaktvvvt.....lGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaal 269
                  ++ll++++l++pn  E++al++     +++e l ++ +l+a g + v+++     +G+ + ++ +  g +++++ p vk   t G+G +  ++++a  
  EHU00199.1 126 RERLLPQVSLITPNLPEAAALLECRMaSNENEMLTQGDALLALGCQAVLMKgghldHGESPDWLITPAGRQRFST-PRVKTRHTHGTGCTLSAALAALR 223
                 35677****************9988889999******************98666667889999999999999*99.99*******************99 PP

                 HTTHHHHHHHH CS
        PfkB 270 legksleealr 280
                  +  +++e + 
  EHU00199.1 224 PRHSDWAETVN 234
                 99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2055.45
//
Query:       EHU00200.1  [L=262]
Description: hydoxyethylthiazole kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-90  302.8   3.6    1.9e-90  302.6   3.6    1.0  1  HK            Hydroxyethylthiazole kinase family
    2.4e-05   23.9   0.8      3e-05   23.6   0.8    1.1  1  Carb_kinase   Carbohydrate kinase
    0.00017   21.0   0.2    0.00024   20.6   0.2    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.052   13.5   4.5       0.13   12.2   1.1    2.5  2  DUF2786       Protein of unknown function (DUF2786)


Domain annotation for each model (and alignments):
>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.6   3.6   4.2e-94   1.9e-90       1     244 [.      17     259 ..      17     261 .. 0.99

  Alignments for each domain:
  == domain 1  score: 302.6 bits;  conditional E-value: 4.2e-94
                 HHHHHHH--EEEEE--TTTHHHHHHHHHHHT-EEEE--STTTHHHHHHTSSEEEEE-TT--HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHH CS
          HK   1 lkklreksPlvhhiTNkVaqnfsANvllAlgaSPimseaeeEvselakianaLllNiGtleekaiealkaAvksakevnrPvvlDPVgvgAtelRrela 99 
                 l+++r++sPlvh++TN+V+q  +ANvllAl aSP+m+++ eE+ +++ ia+aLl+N+Gtl++++ +a+ aA+++a+ +++P++lDPV+vgA++lR++++
  EHU00200.1  17 LQQFRRQSPLVHCMTNDVVQMLTANVLLALNASPAMVIDREEAPQFSGIADALLINVGTLTHERQQAMAAAIEAANLAGTPWTLDPVAVGALTLRNRFC 115
                 799************************************************************************************************ PP

                 HHHHHHS--SEEEEEHHHHHHHHTSSCCSCSSSSSS-SHHHHHHHHHHHHHHTSEEEEESSSEEEEESSEEEEEE-S-GGGGGSTTHHHHHHHHHHHHH CS
          HK 100 lellkevklavikGNasEilslaglelkvkGvDskeaataavaavqkvAqklrvvvvvtGevDvvsdgkkvyklknGtellgkitasGCllgsvvaafl 198
                 +++l  + +avi+GNasEil+la+++   +GvDs++aa++a+ a+q++A+++++ vvvtGevD+ +dg +++++ +G++l+++++++GC+l++vvaaf+
  EHU00200.1 116 QQVL-MQSPAVIRGNASEILALAQQADGGRGVDSQHAAESALLAAQQLAREYQTCVVVTGEVDYATDGMRTLSIVGGSPLMTRVVGTGCALSAVVAAFA 213
                 ****.999******************************************************************************************* PP

                 TTBSSHHHHHHHHHHHHHHHH.HHHHHHHTTHHHHHHHHHHHHH-- CS
          HK 199 avkkdkllaaveavllykvAgkeaaarsegsgsFqvelldalsqlt 244
                 +++ d+l ++++a+ ++ +Ag++aa+ s+g+gsF +++ldal++l 
  EHU00200.1 214 SLPGDRLVNIASACRVMALAGEKAAQASTGPGSFAPAFLDALWTLE 259
                 *******************************************996 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.8   6.8e-09     3e-05      68     229 ..      66     241 ..      25     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 6.8e-09
                  -SEEEE-TT-...SSSHCHHHHCHHHCCCCS-EEEEGGGGGSGGGG......TTTTSSEEEE--HHHHHHHCTTTCH........HCCSHHHHHHHHH CS
  Carb_kinase  68 ldavviGpGL...grdekikklleevlekdeplviDAdgLnllaqkne...lserkaeviLTPhkkEfkrLlkaivk........keddrlelarela 151
                  +da++i  G    +r++++++++e +  +  p  +D  +   l+  n        +++ ++  ++ E   L++ +++          ++ l +a++la
   EHU00200.1  66 ADALLINVGTlthERQQAMAAAIEAANLAGTPWTLDPVAVGALTLRNRfcqQVLMQSPAVIRGNASEILALAQQADGgrgvdsqhAAESALLAAQQLA 163
                  455555555311155666777999999999999999766666666655554778899*******************99999988878888999***** PP

                  HHHTTEEEEESTTSEEEECTTEEEEE----GGG-STTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT CS
  Carb_kinase 152 qklnavvllkgekdvivspegevlinstgssalakGGsGDvLaGligalLaqneasyeaaiaaawlhgaasdeaaekk 229
                  +++++ v++ ge+d   +    ++i+  +  + ++ G+G  L+ +++a+ +   + +   + a+ + + a+++aa+  
   EHU00200.1 164 REYQTCVVVTGEVDYATDGMRTLSIVGGSPLMTRVVGTGCALSAVVAAFASLPGDRLVNIASACRVMALAGEKAAQAS 241
                  ***************999666666666555567899********************999999*********9998865 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   5.4e-08   0.00024      73     212 ..      82     214 ..      50     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.4e-08
                   HHHHHHHHHHHHTTSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT.....---S...SHHHHHHHHHHHHHTT-SEEEE CS
  Phos_pyr_kin  73 eiievvaeklkkykvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlg.....ekik...teedmkeaakkllklgakaVli 161
                   +++++  e+ +  ++p  lDPV v   g+  l++   + +++ L++   vi  N  E+ aL++     + ++    +e++  aa++l++  ++ V++
    EHU00200.1  82 QAMAAAIEAANLAGTPWTLDPVAV---GALTLRN---RFCQQVLMQSPAVIRGNASEILALAQqadggRGVDsqhAAESALLAAQQLAREYQTCVVV 172
                   334444444455666888888877...5555555...45566789999**************97666633442224556677899999999999*** PP

                   EEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHH CS
  Phos_pyr_kin 162 kGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaela 212
                   +G           d+  dg ++  + +     ++  GtGC+ls+++aa  +
    EHU00200.1 173 TGEV---------DYATDGMRTLSIVGGSPLMTRVVGTGCALSAVVAAFAS 214
                   9985.........777777777777777766799*************9865 PP

>> DUF2786  Protein of unknown function (DUF2786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.051   2.3e+02      17      29 ..      75      87 ..      72      89 .. 0.84
   2 ?   12.2   1.1   2.8e-05      0.13      17      36 ..     147     166 ..     133     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.051
     DUF2786 17 tneaEAeaAlakA 29
                t ++E + A+a+A
  EHU00200.1 75 TLTHERQQAMAAA 87
                558********98 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.8e-05
     DUF2786  17 tneaEAeaAlakAqeLmary 36 
                 ++ + Ae+Al++Aq+L  +y
  EHU00200.1 147 DSQHAAESALLAAQQLAREY 166
                 399**************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2054.68
//
Query:       EHU00201.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00201.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00201.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00201.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00201.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 816.19
//
Query:       EHU00202.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00202.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 961.41
//
Query:       EHU00203.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-98  329.2   3.2    1.6e-97  326.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.029   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.036   12.6   6.9      0.056   12.0   6.9    1.3  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.48   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.1  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  326.4   0.0  1.9e-100   1.6e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU00203.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 326.4 bits;  conditional E-value: 1.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00203.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00203.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00203.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00203.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00203.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00203.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00203.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00203.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00203.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00203.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU00203.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00203.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00203.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00203.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU00203.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00203.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00203.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00203.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00203.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU00203.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00203.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00203.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00203.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00203.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00203.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00203.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00203.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU00203.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00203.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00203.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1443  (0.0804841); expected 358.6 (0.02)
Passed bias filter:                     1023  (0.0570584); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 4037.23
//
Query:       EHU00204.1  [L=46]
Description: hypothetical protein CKS_2211 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 372.41
//
Query:       EHU00205.1  [L=201]
Description: resolvase-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-36  125.3   0.1    2.6e-36  124.9   0.1    1.2  1  Resolvase  Resolvase, N terminal domain
      8e-05   22.6   0.0    0.00023   21.2   0.0    1.8  1  HTH_7      Helix-turn-helix domain of resolvase
     0.0014   18.6   0.0     0.0033   17.4   0.0    1.7  1  HTH_29     Winged helix-turn helix
     0.0016   18.1   0.0     0.0041   16.9   0.0    1.6  1  HTH_23     Homeodomain-like domain
     0.0019   17.9   0.0       0.41   10.4   0.0    3.3  4  HTH_38     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.1   7.4e-40   2.6e-36       1     146 []      12     147 ..      12     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 7.4e-40
                 EEEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT.-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEE CS
   Resolvase   1 aigYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakle.RpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslv 98 
                 ++gYaR S+++q+  l+rQ+  l+ ++ ++   i   +++k  SG++   Rp+l +ll++lre  gd+lv +++dRLaR++rdll++++ l ++g++++
  EHU00205.1  12 IFGYARISSKDQN--LQRQLTVLEPVC-DK---I---ITEK-ESGKSISeRPELLNLLSHLRE--GDTLVAHSIDRLARNTRDLLEMIDNLVARGITVQ 98 
                 589**********..************.55...7...9***.*****755*************..********************************** PP

                 ESS...SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase  99 sldeg.idtstpmgrlllqilaalaeferelirertkeglaaakakGkk 146
                 +l+++    ++p++rl+l++++a+aefer +i+ r +eg+  ak++Gk+
  EHU00205.1  99 FLANSmSFDNSPQSRLILTMMGAVAEFERGMIASRRNEGITLAKEAGKY 147
                 ***7545556999**********************************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.3e-08   0.00023      11      43 ..     157     190 ..     146     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.3e-08
                 HGGGGSSTTTT.--STTTSSSS---SSSS--SS- CS
       HTH_7  11 inrvvkLleeG.isiskIAkevnisRsTvYRyla 43 
                  n ++ +l++G  +  +IAk  +++R+Tv R++ 
  EHU00205.1 157 HNKIIDMLQAGkNTPDEIAKLCDCGRATVFRVKK 190
                 589*****************************96 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.2e-07    0.0033       4      37 ..     160     193 ..     157     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.2e-07
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrwlkrfe 37 
                 ++ +l  G  t+ +iAkl+++ r tv+r++k ++
  EHU00205.1 160 IIDMLQAGKNTPDEIAKLCDCGRATVFRVKKEMV 193
                 7778888877********************9865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0041      10      40 ..     160     191 ..     155     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
      HTH_23  10 illllae.GlsvreIAreLgvsrrTvyrwlkr 40 
                 i+ +l+  + ++ eIA+++++ r Tv r++k 
  EHU00205.1 160 IIDMLQAgKNTPDEIAKLCDCGRATVFRVKKE 191
                 899999999********************986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.8   6.3e+03       6      17 ..      48      59 ..      48      61 .. 0.81
   2 ?   -1.2   0.0       0.5   1.8e+03      11      30 ..      85     104 ..      85     109 .. 0.77
   3 ?    3.1   0.1     0.022        80       9      25 ..     126     142 ..     123     145 .. 0.90
   4 !   10.4   0.0   0.00012      0.41      11      39 ..     158     187 ..     148     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
      HTH_38  6 sleeReeIerll 17
                s++eR e+  ll
  EHU00205.1 48 SISERPELLNLL 59
                789999998887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.5
      HTH_38  11 eeIerllaeGlslreIArrL 30 
                 e+I  l a+G ++   A  +
  EHU00205.1  85 EMIDNLVARGITVQFLANSM 104
                 68999999999987766655 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.022
      HTH_38   9 eReeIerllaeGlslre 25 
                 eR +I+  ++eG +l++
  EHU00205.1 126 ERGMIASRRNEGITLAK 142
                 9***********99986 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00012
      HTH_38  11 eeIerllaeG.lslreIArrLgrspsTIsR 39 
                 ++I ++l++G  +  eIA+++++ + T+ R
  EHU00205.1 158 NKIIDMLQAGkNTPDEIAKLCDCGRATVFR 187
                 678899****77888*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1598.37
//
Query:       EHU00206.1  [L=71]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-36  123.6   0.7    6.6e-36  123.5   0.7    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.7   3.7e-40   6.6e-36      61     131 .]       1      71 []       1      71 [] 0.99

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 3.7e-40
  DDE_Tnp_IS1  61 iltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  ++tsddwg+y re+ kdkhl++ki+tqriernnltlrtr+krlark+++fs+s+e+hekvig ++e++m++
   EHU00206.1   1 MITSDDWGSYAREVSKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSIEIHEKVIGAFIERHMFY 71 
                  789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 570.11
//
Query:       EHU00207.1  [L=33]
Description: hypothetical protein CKS_2207 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-18   65.3   1.0    2.8e-18   65.2   1.0    1.0  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.035   13.5   0.0    1.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.0   4.7e-22   2.8e-18      17      46 .]       1      30 [.       1      30 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.7e-22
  HTH_Tnp_IS1 17 mAfNGaGvraTARtlkvGiNTviRtLKnSr 46
                 mAfNGaGvr+TARtlk+GiNTviR LK+Sr
   EHU00207.1  1 MAFNGAGVRDTARTLKIGINTVIRALKSSR 30
                 9****************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06     0.035      28      49 ..       6      27 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  + v++ Ar l ++ +TV+r+l+
    EHU00207.1  6 AGVRDTARTLKIGINTVIRALK 27
                  5589****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      16      40 ..       4      28 ..       1      33 [] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkr 40
                +G+ vr+ Ar L +  +Tv r lk 
  EHU00207.1  4 NGAGVRDTARTLKIGINTVIRALKS 28
                58899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 277.90
//
Query:       EHU00208.1  [L=420]
Description: DEAD/DEAH box helicase domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-08   33.2   0.0    1.6e-07   31.7   0.0    1.8  2  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   8.7e-12   1.6e-07      22     110 ..      33     126 ..      10     127 .. 0.73
   2 ?   -3.1   0.0      0.55   9.9e+03      60      74 ..     217     232 ..     201     264 .. 0.60

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 8.7e-12
                 EESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SSHHHHHHHHTTSSST CS
  Helicase_C  22 fvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rnvtsyiqriGRtgRa 110
                 ++  i+++ +   +l  e  ++ va + g+lpq+ r+ i + f+ g++d+L +t+ + +G+++p  ++ i  + +     +  +++  +GR+gR 
  EHU00208.1  33 ISSEIRSFVHdnYEL-AEAINYGVAFHFGNLPQSIRDLIEHHFKIGNIDYLFCTSTLLEGVNLPARSVFILTHKKgpnpLESVDFWNLAGRAGRL 126
                 333334332222233.3445899*****************************************99999988888744444699*********96 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.55
                 HHHH.TTSSSEEEESG CS
  Helicase_C  60 eqfn.kgesdvLiatd 74 
                 + f+ +g+s +L++  
  EHU00208.1 217 SYFQsSGKSEILLSAE 232
                 4444345555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3241.95
//
Query:       EHU00209.1  [L=304]
Description: phage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-05   22.5   0.1    0.00021   21.4   0.1    1.5  1  DUF3258          Protein of unknown function DUF3258
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.033   14.0   0.0    1.6  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> DUF3258  Protein of unknown function DUF3258
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.3e-08   0.00021      31      98 ..     134     203 ..     121     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.3e-08
                 EEE.EEEEEEE-TTS-EEEEEEEEEEHHHHHTT-S-.....-TTS---------.--SS-HHHHHHHHHH CS
     DUF3258  31 kRf.liaWvevdkDkkieeykvkdieifidiisdLPkrnkreykkkawveelni.dvaeddivavktvkr 98 
                 +R+ ++ +v ++k+  +   +++di+  ++ + +LPkr  ++y+ + +    ++ dv+ d++v v+++++
  EHU00209.1 134 ERYiEVLFVVLGKNTDVTAITKQDIRQVMEVVENLPKRVVQPYRSMNVQQLIDCdDVPPDELVGVEAINK 203
                 566346689999******************************************55**********9976 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-06     0.033       7      52 ..     247     292 ..     244     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-06
                      HHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTT CS
  Phage_integrase   7 everllaaleeslkirdklllellyetGlRisEllsLrvkdldlen 52 
                      e++++++ ++++ + + k ++ ll  tG+R +E+++L+ +++++++
       EHU00209.1 247 EMKKFVEWAHKQPDGWLKWITLLLAYTGARRGEIAKLEKSQIKFDE 292
                      67777788888777899**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2224.36
//
Query:       EHU00210.1  [L=65]
Description: hypothetical protein CKS_2202 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 572.37
//
Query:       EHU00211.1  [L=319]
Description: putative permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-28   97.3  29.0    1.9e-16   59.5  12.9    2.0  2  Mem_trans  Membrane transport protein
  ------ inclusion threshold ------
      0.065   13.7   0.6      0.065   13.7   0.6    3.9  4  DUF202     Domain of unknown function (DUF202)
        3.3    8.1   6.1          2    8.8   0.6    2.8  2  DUF4133    Domain of unknown function (DUF4133)


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   7.9   1.4e-15   8.3e-12       7     147 ..      16     154 ..      11     169 .. 0.90
   2 !   59.5  12.9   3.2e-20   1.9e-16     239     387 .]     169     311 ..     161     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.4e-15
   Mem_trans   7 vplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfslstlp 105
                 +pl+++++lgY   kw +  + +  +g+nrfV+++a+P+++f  +s+ ++    +++ l++ +++   l++++   l s++f ++    +++ +  +++
  EHU00211.1  16 APLFILIFLGYCLTKW-GKWPLSISEGMNRFVFNVALPCMLFRIMSDFYNSP-AVDVRLLLAFFGSCLLVFIVGRILASRLFHLDGVAGSVFALGGVFS 112
                 79**************.**************************999966655.7889999999999888888888999999****************** PP

   Mem_trans 106 Ntlvlgipllkalygeygvslmvqvvvlqciiiytlllflfe 147
                 N ++lgip+   l g  ++  + +v v +  +++tll + +e
  EHU00211.1 113 NNVMLGIPVATVLLGPGALPSVALVLVFNSLLLWTLLTVSVE 154
                 ****************99999999999999999999987776 PP

  == domain 2  score: 59.5 bits;  conditional E-value: 3.2e-20
   Mem_trans 239 vlrklirnPntyssllglilslvsfkwnvimpkiiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfalavRlilgPlvmlvavlavgLrgs 337
                 +l++ +rnP ++++l g  +sl + + +    +i ++ +++l++ + p+ l+ lG +La    ++ +g +++  + a++lil+Pl +++++ + gL++ 
  EHU00211.1 169 TLISVLRNPLIIGILSGTAWSLLQRPLP----AIAAEPLRMLASIAAPLSLVTLGMSLAHY--RVRVGLKESYTICALKLILQPLCVWAIAWLTGLPAL 261
                 567789*****************99988....***************************66..677888888789************************ PP

   Mem_trans 338 lllvaivqaAlPqgivlfviAkeynvherelstllifgmlialpitlvyy 387
                   +v+++  ++  g++ + + +++nv +  +++ +++++l+a+++t++++
  EHU00211.1 262 ESKVVVLLGSMAVGVNVYLMSQKFNVITGPTAASMLLSTLFAAITTPLWM 311
                 *************************************************7 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.31   1.8e+03      41      59 ..      70      88 ..      18      96 .. 0.55
   2 ?   -4.1   6.3         3   1.8e+04      18      33 ..      82     111 ..      70     159 .. 0.49
   3 ?   13.7   0.6   1.1e-05     0.065       8      66 ..     168     229 ..     167     230 .. 0.90
   4 ?    1.1   1.0     0.096   5.7e+02      20      54 ..     269     309 ..     263     317 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.31
      DUF202 41 kilglilivlgiltllvgl 59
                + l l++++  +l+++vg+
  EHU00211.1 70 VRLLLAFFGSCLLVFIVGR 88
                3344556666666666654 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
      DUF202  18 lalialglallrffl..............t 33 
                 l++i+  ++  r+f+               
  EHU00211.1  82 LVFIVGRILASRLFHldgvagsvfalggvF 111
                 333333344444444322222222222221 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.1e-05
      DUF202   8 RTfLaWlRtslalialglallrffltgepsalg...kilglilivlgiltllvglvrylrrq 66 
                 RT+++ lR  l +++l+ + + + +++ p+ ++   + l+ i+++l+++tl+++l  y+ r+
  EHU00211.1 168 RTLISVLRNPLIIGILSGTAWSLLQRPLPAIAAeplRMLASIAAPLSLVTLGMSLAHYRVRV 229
                 9**********************99999998874456669******************9885 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.096
      DUF202  20 lialglall..rffl....tgepsalgkilglilivlgilt 54 
                 l+++++++      +      +p+a++++l+++++++++ +
  EHU00211.1 269 LGSMAVGVNvyLMSQkfnvITGPTAASMLLSTLFAAITTPL 309
                 44444444422222234446677777889999999888655 PP

>> DUF4133  Domain of unknown function (DUF4133)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.086   5.2e+02      34      73 ..     121     160 ..      95     170 .. 0.74
   2 ?    8.8   0.6   0.00033         2      13      68 ..     230     285 ..     226     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.086
     DUF4133  34 vilyiiGvsqliclalivvagsllvvlvfrlnkkyGehGl 73 
                 v   ++G + l ++al++v  sll++++ +++ ++ + G 
  EHU00211.1 121 VATVLLGPGALPSVALVLVFNSLLLWTLLTVSVEWSKQGS 160
                 5566778888888999999999999999998888877776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00033
     DUF4133  13 GLkaqylfilagglvallllvvilyiiGvsqliclalivvagsllvvlvfrlnkky 68 
                 GLk  y + ++  ++  l + +i +++G++ l + ++++++ +++ v v+ +++k+
  EHU00211.1 230 GLKESYTICALKLILQPLCVWAIAWLTGLPALESKVVVLLGSMAVGVNVYLMSQKF 285
                 9***************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2783.01
//
Query:       EHU00212.1  [L=522]
Description: FAD/NAD(P)-binding alkyl hydroperoxide reductase, F52a subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-44  152.4   4.5    2.4e-44  151.7   4.5    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.2e-19   68.6   1.0    1.1e-15   57.7   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.8e-15   57.3   4.4    1.3e-14   54.5   0.4    2.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.3e-10   41.0   4.7     0.0001   21.5   0.9    3.4  3  GIDA           Glucose inhibited division protein A
    1.2e-08   34.9   0.0    3.5e-08   33.4   0.0    1.8  1  Thioredoxin_3  Thioredoxin domain
    2.2e-07   30.3  12.5    0.00056   19.1   1.4    4.7  6  FAD_binding_2  FAD binding domain
    1.5e-06   27.8  11.0    1.3e-05   24.8   0.6    3.1  3  FAD_oxidored   FAD dependent oxidoreductase
    2.5e-05   23.2   6.5      0.062   12.0   0.6    3.3  3  HI0933_like    HI0933-like protein
    0.00031   20.1   3.0     0.0022   17.3   0.3    2.2  2  FAD_binding_3  FAD binding domain
     0.0013   19.0   5.4       0.01   16.1   0.3    3.4  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0013   18.0   1.3     0.0055   16.0   0.1    2.1  2  Thi4           Thi4 family
     0.0034   17.0   9.5       0.22   11.1   0.5    3.5  4  DAO            FAD dependent oxidoreductase
     0.0066   16.6   0.5      0.067   13.4   0.0    2.6  2  Glutaredoxin   Glutaredoxin
  ------ inclusion threshold ------
      0.011   15.0   1.6        1.4    8.1   0.1    2.4  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.05   12.7   0.1       0.73    8.9   0.0    2.3  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.082   11.3   0.0       0.17   10.3   0.0    1.4  2  FMO-like       Flavin-binding monooxygenase-like
       0.19   11.5   0.0       0.37   10.6   0.0    1.5  1  DSBA           DSBA-like thioredoxin domain
        3.4    7.7   5.0         33    4.4   0.0    3.5  4  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   4.5   2.4e-47   2.4e-44       1     293 [.     213     503 ..     213     507 .. 0.89

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 2.4e-47
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias........evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +dv++iG+GpAG aaa++ a++g++++l+   g+ ++g++l +  ++++ + ++++          +v+ ++ +++      ++k++p ++k  l + 
   EHU00212.1 213 YDVLIIGSGPAGAAAAIYSARKGIRTALM---GERFGGQVLDTVDIENYISVQKTEGaklagalrAHVDDYSVDVIDSQS--AIKLIPSAAKGGLHAI 305
                  69***************************...777899999999999999999988899999**9999999877665555..99*9999988888777 PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                  ++ ++  ++  +++lAtG++ r++g+pG++++ +k+v ++ ++++   k ++  ++v+GgG+ GvE A+ la + ++vtl+e ++++       + + 
   EHU00212.1 306 ETASGAVLKSRSIILATGARWRNMGVPGEEQYRTKGVTYCPHCDGPLFKGKR--TAVIGGGNSGVEAAIDLAGIVEHVTLLEFASEMR------ADKV 395
                  778999****************************************988887..*******************************997......9999 PP

                  HHHHHHHT.TEEEEESCEEEEEEETTEEEE...EEETTSCE...EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGCT CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxx...xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealeke.Gvevklgtsvkeidgngekle...vvledgee...idadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDvag 279
                  l+++l+   +v+v l+++ +e++g+g+k++   + + ++++   ++ + ++v +G+ p+t+ l  +  +e ++ g i +d +++t+ +g++a+GD++ 
   EHU00212.1 396 LQDKLRSLkNVDVILNAQTTEVKGDGSKVTglqYLDRTNQTtheLALSGIFVQIGLLPNTTWL--EGAVERNKMGEIIIDAKCETSLKGVFAAGDCT- 490
                  999999999******************44454444444444466******************8..789*****************************. PP

                  ECCSS--HHHHHHH CS
                  xxxxxxxxxxxxxx RF
  Pyr_redox_2 280 gkggpelaqaAvqq 293
                   +  ++++  A+ +
   EHU00212.1 491 -TVPYKQIIIASGE 503
                  .5556666666555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   1.1    0.0011       1.1       1      25 [.     216     240 ..     216     246 .. 0.88
   2 !   57.7   0.0   1.1e-18   1.1e-15      75     305 .]     261     487 ..     249     487 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledyl 25 
                  +IiG GPaG aaai   ++g+ + l
   EHU00212.1 216 LIIGSGPAGAAAAIYSARKGIRTAL 240
                  6******************997655 PP

  == domain 2  score: 57.7 bits;  conditional E-value: 1.1e-18
  Pyr_redox_3  75 eeklsrkealeYlrevaksfelpikl.feeVesvkk..edegfevetske.tyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefh..kyagq 165
                   +k ++++++  lr+ ++ + +++   ++ ++ + +  +++   +et ++ +++++++i+AtG   + + +++pGee+   k   + ++++   ++g+
   EHU00212.1 261 VQKTEGAKLAGALRAHVDDYSVDVIDsQSAIKLIPSaaKGGLHAIETASGaVLKSRSIILATGA--RWRNMGVPGEEQyRTKGVTYCPHCDgpLFKGK 356
                  56777788888888888888888655055566666642345599**999779***********9..88899******9423444445554321699** PP

  Pyr_redox_3 166 kvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk....tedgkkvevkd 259
                  + +ViGg+nS+v+aA++l+    +Vt++   se+++++         + +++l++l +   ++v+ na+++e+k + ++++       ++++++e   
   EHU00212.1 357 RTAVIGGGNSGVEAAIDLAGIVEHVTLLEFASEMRADK---------VLQDKLRSLKN---VDVILNAQTTEVKGDGSKVTGLqyldRTNQTTHELAL 442
                  *******************************9887764.........56777777643...8999999999999888777422222255556666677 PP

  Pyr_redox_3 260 dvvla.tGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                    +++ +G  p+++ l+   +e+++ g++ ++ +++et ++g+f aG
   EHU00212.1 443 SGIFVqIGLLPNTTWLE-GAVERNKMGEIIID-AKCETSLKGVFAAG 487
                  7788889*********9.88999888888876.578999******99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.13   1.3e+02       2      28 ..     215     241 ..     214     256 .. 0.87
   2 !   54.5   0.4   1.3e-17   1.3e-14       1      77 [.     357     428 ..     357     432 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
                 EEEECSSHHHHHHHHHHHHTTSEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvv 28 
                 v+++G+G  g  +A + a+ g ++ ++
  EHU00212.1 215 VLIIGSGPAGAAAAIYSARKGIRTALM 241
                 89*************999999877665 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 1.3e-17
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvk 77 
                 + +v+GgG++g+E+A  la +  +Vt++e +++++      a k+lq+kl+ + +++v+ln++++e++g++++v++++
  EHU00212.1 357 RTAVIGGGNSGVEAAIDLAGIVEHVTLLEFASEMR------ADKVLQDKLRSLkNVDVILNAQTTEVKGDGSKVTGLQ 428
                 579********************************......**********999******************998876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.9     1e-07    0.0001       1      31 [.     214     244 ..     214     261 .. 0.86
   2 !    5.8   0.0    0.0063       6.3     105     154 ..     285     328 ..     257     344 .. 0.69
   3 !   13.4   0.1     3e-05      0.03       3      29 ..     359     389 ..     357     425 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1e-07
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithk 31 
                 dv +iG G AG +AA+ +ar+G++++L+ ++
  EHU00212.1 214 DVLIIGSGPAGAAAAIYSARKGIRTALMGER 244
                 799************************9443 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0063
                 HHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT- CS
        GIDA 105 lenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkg 154
                 ++++  +++i   ++      + ++++ t++g+++k++++++atG+  + 
  EHU00212.1 285 IDSQSAIKLIPSAAK------GGLHAIETASGAVLKSRSIILATGARWRN 328
                 444444444443333......45578*******************94444 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 3e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi....t 29 
                  ViGgG +G+eAA+ +a    +v+L+     
  EHU00212.1 359 AVIGGGNSGVEAAIDLAGIVEHVTLLefasE 389
                 6****************99999999944432 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.5e-11   3.5e-08       7      71 ..     126     192 ..     120     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.5e-11
                    SSSSTTCH.HHHHHHHHHCHCCTCECEEECC.TTHHHHHHCT-SSSSEEECTTCEEEESS---CCHH CS
  Thioredoxin_3   7 gpgCakCp.klekavkeaaaekgikaevekv.tdfeeiekygVmsvPalvidgkvvvsGkvpseeei 71 
                    + +C++Cp  ++++   a+ +++i+ + ++     +ei++++Vm vPa++++gk   +G++   e +
     EHU00212.1 126 SLSCHNCPdVVQALNLMAVLNPRISHTAIDGgLFQNEIQERNVMGVPAVFLNGKEFGQGRMSLAEIV 192
                    679*****555566667777779***999994555567*********************76555544 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.4   2.4e+03      63     105 ..     105     148 ..      92     182 .. 0.74
   2 !   19.1   1.4   5.7e-07   0.00056       1      28 [.     214     241 ..     214     250 .. 0.92
   3 !    7.3   0.0    0.0022       2.2     136     227 ..     262     350 ..     242     355 .. 0.81
   4 ?    3.1   1.1      0.04        40       3      32 ..     359     388 ..     357     395 .. 0.82
   5 ?   -2.5   0.0         2     2e+03     147     193 ..     396     443 ..     392     467 .. 0.78
   6 ?    4.6   0.0     0.014        14     373     405 ..     467     493 ..     430     502 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
                    HHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHHHHHTT----B CS
  FAD_binding_2  63 elhrtdtlkaldela.dqplveafveaapeavdeLeelgvpfsr 105
                     + + d ++ald++   + +  + ++++p+ v+ L  + v   r
     EHU00212.1 105 AQNLLDQIAALDGDFhFETYYSLSCHNCPDVVQALNLMAVLNPR 148
                    56677888888888878889999999999999998877555444 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.7e-07
                    SEEEE--SHHHHHHHHHHHHTTT-EEEE CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavv 28 
                    Dv++iGsG AG aAA+  a++G ++a++
     EHU00212.1 214 DVLIIGSGPAGAAAAIYSARKGIRTALM 241
                    9************************997 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0022
                    ...HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S- CS
  FAD_binding_2 136 tlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtG 227
                    + ++g +l+ +l ++++++ vd+ ++ +a +Li     + G   + ++ ++ v ++++ ++latg+  r++  +  +++ ++ +t  p+++G
     EHU00212.1 262 QKTEGAKLAGALRAHVDDYSVDVIDSQSAIKLIP--SAAKGGLHAIETASGAV-LKSRSIILATGARWRNMGVPGEEQYRTKGVTYCPHCDG 350
                    45799***************************88..55666555544444444.6899********99977778888899999999999998 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.04
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                     ViG+G +G  AA+ +a     v+++e ++
     EHU00212.1 359 AVIGGGNSGVEAAIDLAGIVEHVTLLEFAS 388
                    69**************98777777777555 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 2
                    HHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES CS
  FAD_binding_2 147 lvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirak 193
                    l +++r+++ vd+  +++ +e+  ++ +vtG    +++++++++++  
     EHU00212.1 396 LQDKLRSLKnVDVILNAQTTEVKGDGSKVTGLQYLDRTNQTTHELALS 443
                    667777888899999999999987777999999999999988876655 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.014
                    S-EEEBETTSBESTTEEESSBTEEE-STCEESS CS
  FAD_binding_2 373 mgGvetdengrvldadgqpipGLYAaGevaagg 405
                    mg + +d+++++       ++G +AaG ++ + 
     EHU00212.1 467 MGEIIIDAKCET------SLKGVFAAGDCTTVP 493
                    555788999999......***********9665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.6   1.3e-08   1.3e-05       1      37 [.     214     248 ..     214     294 .. 0.85
   2 ?    2.4   1.2     0.081        81       4      20 ..     360     376 ..     358     390 .. 0.79
   3 !    6.2   0.1    0.0056       5.6      89     130 ..     392     434 ..     386     441 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.3e-08
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGl 37 
                   Dv+++G+gpaG aAAi +ar+G +++L  er   GG+
    EHU00212.1 214 DVLIIGSGPAGAAAAIYSARKGIRTALMGER--FGGQ 248
                   9**************************8764..5665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.081
  FAD_oxidored   4 VvGGgpaGvaAAiaAar 20 
                   V+GGg +Gv AAi  a 
    EHU00212.1 360 VIGGGNSGVEAAIDLAG 376
                   9************8775 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0056
  FAD_oxidored  89 akavleeml.aeagvtvllntrlvevekegkriesvtveskeg 130
                   a +vl++ l + ++v+v+ln++ +ev+ +g ++++++  ++++
    EHU00212.1 392 ADKVLQDKLrSLKNVDVILNAQTTEVKGDGSKVTGLQYLDRTN 434
                   6789999995559*****************9******988764 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.6   6.3e-05     0.062       1      29 [.     213     241 ..     213     249 .. 0.92
   2 ?    3.1   0.0     0.031        31     110     164 ..     268     324 ..     261     337 .. 0.74
   3 !    9.9   0.2   0.00027      0.27       2      34 ..     357     389 ..     356     397 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlll 29 
                  +dv++iG G+AG  aAi  a++g r++l+
   EHU00212.1 213 YDVLIIGSGPAGAAAAIYSARKGIRTALM 241
                  59*********************999987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.031
                  HHHHHHHHHHHHHT-EEE-.S--EEEE.ECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 110 divdallkelkeagvklrl.etevksv.ekeedgkfrvktkseeeleadklvlAtGG 164
                  ++  al +++++  v++   ++++k + ++ ++g + ++t s+  l++++++lAtG 
   EHU00212.1 268 KLAGALRAHVDDYSVDVIDsQSAIKLIpSAAKGGLHAIETASGAVLKSRSIILATGA 324
                  566788888889888865505555655545667778999999************986 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00027
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  +++viGgG +G+ aAi +a   ++V+lle a++
   EHU00212.1 357 RTAVIGGGNSGVEAAIDLAGIVEHVTLLEFASE 389
                  579*************************97765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   2.2e-06    0.0022       2      30 ..     213     241 ..     212     250 .. 0.91
   2 ?    3.0   0.1      0.05        50       4      73 ..     358     423 ..     356     456 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.2e-06
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlv 30 
                    +dVlI+G+GpaG+ +a   +++G+r+ l 
     EHU00212.1 213 YDVLIIGSGPAGAAAAIYSARKGIRTALM 241
                    69***********************8765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.05
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCE CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmg 73 
                    ++++G+G +G+ +a  L+   v++v +    + + + rad + q  +++l+++ +  +++ + ++ ++++
     EHU00212.1 358 TAVIGGGNSGVEAAIDLAGI-VEHVTLL---EFASEMRADKVLQDKLRSLKNVDVILNAQTTEVKGDGSK 423
                    579***********999988.7765543...455677899999999999998888777777766666544 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3     1e-05      0.01       1      37 [.     217     251 ..     217     262 .. 0.89
   2 ?    0.8   0.0      0.59   5.9e+02      11      30 ..     269     290 ..     265     291 .. 0.79
   3 ?    2.3   0.2       0.2   1.9e+02       1      26 [.     360     385 ..     360     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraas 37 
                    I+G+G +G++aA + a++g++  l   ++r+GG++ +
     EHU00212.1 217 IIGSGPAGAAAAIYSARKGIRTALM--GERFGGQVLD 251
                    9***********************8..8899999875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.59
                    HHHHHHCC..TEEEEEE-SSSS CS
  NAD_binding_8  11 aAylLaka..gfdvlllekrdr 30 
                    +A +L+ +  +++v+++++++ 
     EHU00212.1 269 LAGALRAHvdDYSVDVIDSQSA 290
                    5667888777********9975 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.2
                    EE--SHHHHHHHHHHHCCTEEEEEE- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvllle 26 
                    ++G+G sG  aA  La    +v+lle
     EHU00212.1 360 VIGGGNSGVEAAIDLAGIVEHVTLLE 385
                    8***********99997666788877 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.5e-06    0.0055       6      50 ..     201     244 ..     198     291 .. 0.86
   2 ?    0.4   0.1      0.31   3.1e+02      21      38 ..     359     376 ..     353     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.5e-06
                 HHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4   6 eryfedllkyaesDvvivGaGssGLtaayylakkpdlkvailers 50 
                 +r+ e l k    Dv+i+G+G++G +aa y a+k ++++a++ ++
  EHU00212.1 201 KRAAEALNKREAYDVLIIGSGPAGAAAAIYSARK-GIRTALMGER 244
                 5677888888899*********************.****999776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.31
                 EEE--SHHHHHHHHHHHH CS
        Thi4  21 vivGaGssGLtaayylak 38 
                 +++G+G sG+ aa  la 
  EHU00212.1 359 AVIGGGNSGVEAAIDLAG 376
                 699**********99885 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.5   0.00022      0.22       1      26 [.     214     241 ..     214     248 .. 0.85
   2 ?    3.8   0.0     0.035        35     146     207 ..     267     326 ..     262     351 .. 0.70
   3 !    6.6   0.2    0.0052       5.2       2      27 ..     358     385 ..     357     393 .. 0.85
   4 ?   -3.7   0.0       6.8   6.7e+03     159     184 ..     403     432 ..     394     439 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
                 EEEEECTSHHHHHHHHHHHHTT..EEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtll 26 
                 dv+iiG+G +G+++A + ar+g  ++l 
  EHU00212.1 214 DVLIIGSGPAGAAAAIYSARKGirTALM 241
                 8*******************99876664 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHTT-EEEESECEEEEEEEE...TCEEEEEEECT.EEE.EEEEEEEE--GGGHHHH CS
         DAO 146 akltaalaraaealGveilegtevtgleeed...gkvwgverttp.gen.daadavVnaaGawsdll 207
                 akl+ al++ + +  v+++    + +l   +   g+++ +  +t+ g++ ++ + +++a+Ga    +
  EHU00212.1 267 AKLAGALRAHVDDYSVDVIDSQSAIKLIP-SaakGGLHAI--ETAsGAVlKS-RSIILATGAR---W 326
                 78888899999999999999999999733.3233666666..6676999667.99******98...4 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0052
                 EEEECTSHHHHHHHHHHHHTT....EEEEE CS
         DAO   2 vviiGGGiiGlstAyeLarrg....Vtlle 27 
                  ++iGGG  G+ +A +La  g    Vtlle
  EHU00212.1 358 TAVIGGGNSGVEAAIDLA--GivehVTLLE 385
                 68***************4..55568***99 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 6.8
                 TT.-EEEESECEEEEEEEETCEEEEE...E CS
         DAO 159 lG.veilegtevtgleeedgkvwgve...r 184
                 l  v+++++++ t+++ ++ kv+g++   r
  EHU00212.1 403 LKnVDVILNAQTTEVKGDGSKVTGLQyldR 432
                 433999999999999777788888877642 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.7e-05     0.067       4      58 ..     125     179 ..     123     181 .. 0.78
   2 ?   -0.5   0.5       1.5   1.4e+03       6      12 ..     340     348 ..     337     349 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.7e-05
                   EES..TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTE CS
  Glutaredoxin   4 ftk..ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgk 58 
                   ++   ++Cp+ ++a +l+  l+ ++    +d    ++ e++e+ +v+ vP vf +gk
    EHU00212.1 125 YSLscHNCPDVVQALNLMAVLNPRISHTAIDGG-LFQNEIQER-NVMGVPAVFLNGK 179
                   555556677777777777777777888888885.99****999.************8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
                   S..TSSHHH CS
  Glutaredoxin   6 k..ptCpyC 12 
                   k  ++Cp+C
    EHU00212.1 340 KgvTYCPHC 348
                   45589**** PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2    0.0087       8.6      28      55 ..     212     239 ..     198     272 .. 0.87
   2 ?    8.1   0.1    0.0014       1.4      30      63 ..     357     390 ..     347     437 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0087
                  --EEEEESTSHHHHHHHHHHHHTT-EEE CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVt 55 
                  +  vl+iG G aG +A+  +++ g ++ 
   EHU00212.1 212 AYDVLIIGSGPAGAAAAIYSARKGIRTA 239
                  5579*************99998887665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrpar 63 
                  ++ viGgG  G++A+   +g+  +Vt+l+  ++ 
   EHU00212.1 357 RTAVIGGGNSGVEAAIDLAGIVEHVTLLEFASEM 390
                  689************************9987654 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.14   1.4e+02     188     206 ..     209     227 ..     191     242 .. 0.65
   2 ?    8.9   0.0   0.00073      0.73     189     219 ..     353     383 ..     297     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
  K_oxygenase 188 llakkriaVvGsGqSaaei 206
                  ++++ +++++GsG  +a  
   EHU00212.1 209 KREAYDVLIIGSGPAGAAA 227
                  5566667777777665543 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00073
  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkkvel 219
                   ++kr aV+G+G S+ e + dl+   ++v+l
   EHU00212.1 353 FKGKRTAVIGGGNSGVEAAIDLAGIVEHVTL 383
                  57899*****************988776554 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.6   2.5e+03     185     223 ..     214     253 ..     208     258 .. 0.74
   2 ?   10.3   0.0   0.00017      0.17     160     211 ..     332     383 ..     325     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.6
    FMO-like 185 rvlviGlGnsggdiavelsrta.eqvllstrsGswvlsrv 223
                  vl+iG G +g+  a+  +r+  +  l+  r G+ vl+ v
  EHU00212.1 214 DVLIIGSGPAGAAAAIYSARKGiRTALMGERFGGQVLDTV 253
                 5899999999999998776664156677888888888766 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00017
    FMO-like 160 pGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvll 211
                 pG e+++ + +    + +   fkgkr  viG Gnsg + a++l+   e+v l
  EHU00212.1 332 PGEEQYRTKGVTYCPHCDGPLFKGKRTAVIGGGNSGVEAAIDLAGIVEHVTL 383
                 555555555555555556668**********************999998865 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037      0.37     157     188 ..     160     191 ..     158     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
                 HHHHHHTT-SSSSEEEETTCEEEESSSSHHHH CS
        DSBA 157 taaaqslgvtGvPtvvvdgkrmvfGadrldtl 188
                 +++ q+++v GvP+v+++gk +  G  +l  +
  EHU00212.1 160 QNEIQERNVMGVPAVFLNGKEFGQGRMSLAEI 191
                 578899*************9877777766655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.4   6.4e+03     106     144 ..      22      60 ..      10      62 .. 0.75
   2 ?    1.1   0.3      0.34   3.4e+02       2      14 ..     217     229 ..     216     238 .. 0.87
   3 ?    4.4   0.0     0.033        33     113     155 ..     278     324 ..     267     325 .. 0.72
   4 ?    1.9   0.0       0.2     2e+02       1      17 [.     359     375 ..     359     400 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.4
  NAD_binding_9 106 ellarlpegvtvevhraevvdleeradgqavlladgasl 144
                    el+a+l +g + + +r+  vd++   d++ +++++++++
     EHU00212.1  22 ELIATLDDGAKSTEIRNLLVDIASLSDKVSFREENDRQV 60 
                    467788888889999999999999988888888777665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.34
  NAD_binding_9   2 ivGaGprGlavle 14 
                    i+G Gp+G+a++ 
     EHU00212.1 217 IIGSGPAGAAAAI 229
                    9********9985 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.033
  NAD_binding_9 113 egvtvevh.raevvdleeradg..q.avlladgaslaadaVvLAlGh 155
                    ++ +v+v+ ++++++l ++a++    a+ +a+ga l+ ++++LA+G 
     EHU00212.1 278 DDYSVDVIdSQSAIKLIPSAAKggLhAIETASGAVLKSRSIILATGA 324
                    556777774557888777664423348999***************95 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.2
  NAD_binding_9   1 aivGaGprGlavlerLl 17 
                    a++G+G +G+ ++  L+
     EHU00212.1 359 AVIGGGNSGVEAAIDLA 375
                    89*********999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3673.74
//
Query:       EHU00213.1  [L=187]
Description: alkyl hydroperoxide reductase, C22 subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-33  114.1   0.0    4.5e-33  113.8   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    2.3e-11   43.6   0.0      3e-11   43.2   0.0    1.1  1  Redoxin        Redoxin
    4.4e-07   29.6   0.1    7.9e-07   28.8   0.1    1.4  1  1-cysPrx_C     C-terminal domain of 1-Cys peroxiredoxin
    8.6e-05   22.5   0.0    0.00057   19.8   0.0    2.0  2  SCO1-SenC      SCO1/SenC
  ------ inclusion threshold ------
      0.014   16.4   0.4      0.021   15.8   0.4    1.3  1  DUF3986        Protein of unknown function (DUF3986)
      0.017   14.8   0.1      0.026   14.2   0.1    1.3  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   1.5e-36   4.5e-33       7     123 ..      13     133 ..       4     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 1.5e-36
                 --EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.....SSEEEE-TTSHHHHHTT-E CS
    AhpC-TSA   7 dfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes....lnfpllsDeegkvakaygvl 101
                 +   k++++ + + +d++gk+ v+ffyp+d+++vC+tel + a++yeef+++gv+++ vs+d++++hk+++   +    +++ ++ D++g++ ++++++
  EHU00213.1  13 NSAFKDGQFIELTEKDVEGKWSVFFFYPADFTFVCPTELGDVADHYEEFQKLGVDIYSVSTDTHFTHKAWHGSSDtiakIKYAMIGDPTGALTRNFDIM 111
                 44455888888889************************************************************9************************ PP

                 ETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 102 keekglalratfvidkegkiry 123
                 +e++gla r+tf++d++g+i++
  EHU00213.1 112 REDEGLADRGTFIVDPQGVIQA 133
                 ********************97 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0     1e-14     3e-11       6     136 ..       8     140 ..       4     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1e-14
                 B---ECCEETTCEEEEEHHH..HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH....TT-TSEEEE-TTSHHH CS
     Redoxin   6 aPdftlplaatdgnsvslse..fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk....eglkfpvlsDgsaaft 98 
                 ++ f+   a +dg+ ++l e  ++gk  v +f+p+ f+ +C +e+ ++++ +e++ + gvd+  v++d+    k++ g+     ++k+ ++ D+++a+t
  EHU00213.1   8 IKPFKN-SAFKDGQFIELTEkdVEGKWSVFFFYPADFTFVCPTELGDVADHYEEFQKLGVDIYSVSTDTHFTHKAWHGSsdtiAKIKYAMIGDPTGALT 105
                 555553.446778878887777****************************************88888877666666666****999************* PP

                 HHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin  99 kalGlrleedaseglrtpryavidedgkvvylevepep 136
                 ++++  ++ed  egl+ + ++++d +g++ ++e  +e 
  EHU00213.1 106 RNFD-IMRED--EGLADRGTFIVDPQGVIQAVEITAEG 140
                 ****.45666..55799*************99987765 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   2.6e-10   7.9e-07       3      30 ..     156     181 ..     154     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.6e-10
                 HHHHHH.T-BB-TTT.TBT-EEE---SSH CS
  1-cysPrx_C   3 Qladkh.gvatPAnWkpGdkvivpPpate 30 
                 Q++++h g+++PA Wk+Gd ++   +++ 
  EHU00213.1 156 QYVASHpGEVCPAKWKEGDATL---APSL 181
                 9*********************...6665 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.9e-07   0.00057      13      67 ..      23      75 ..      13      92 .. 0.90
   2 ?    0.2   0.0      0.21   6.4e+02      10      43 ..     139     172 ..     134     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.9e-07
   SCO1-SenC 13 avteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDP 67
                + te+d+egk+s++ff  +  + vCpt+l ++a+ ++++++    v++++++ D 
  EHU00213.1 23 ELTEKDVEGKWSVFFFYPADFTFVCPTELGDVADHYEEFQKL--GVDIYSVSTDT 75
                579***********99999999*****************998..78888888876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.21
   SCO1-SenC  10 dgeavteedlegkpslvffgFthCpdvCpttlan 43 
                 +g  ++ +dl  k+ +++++ +h  +vCp++ ++
  EHU00213.1 139 EGIGRDASDLLRKVKAAQYVASHPGEVCPAKWKE 172
                 5666778889999999999999999****98776 PP

>> DUF3986  Protein of unknown function (DUF3986)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.4   7.1e-06     0.021      30      77 ..      30      77 ..      16      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.1e-06
     DUF3986 30 edvWvvyfdf.edygvekdelslskf.dkyalfdkyGykvysikakdlde 77
                e++W v+f +  d++   + ++l+ + d+y+ f+k G+ +ys+ ++d ++
  EHU00213.1 30 EGKWSVFFFYpADFTFVCP-TELGDVaDHYEEFQKLGVDIYSV-STDTHF 77
                789***9988577766555.8999999****************.666555 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   8.8e-06     0.026     144     188 ..      52      98 ..      38     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.8e-06
                    STT-STTHHHHTTT--EEEE..CTSSS-TTTTSTTSSGGGB-HHHHH CS
  Peptidase_M28 144 grgrsDhspflkagvpvldl..aetgfpevyHtprDtldnidkdtla 188
                    g++ + +  f+k gv + ++   ++  ++ +H ++Dt+++i+++ ++
     EHU00213.1  52 GDVADHYEEFQKLGVDIYSVstDTHFTHKAWHGSSDTIAKIKYAMIG 98 
                    666677789***********64444559**************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1428.77
//
Query:       EHU00214.1  [L=45]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 385.10
//
Query:       EHU00215.1  [L=76]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-11   44.7   0.1    1.3e-11   44.5   0.1    1.0  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.1e-11   42.6   0.0      7e-11   42.4   0.0    1.1  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.9e-10   40.0   0.0    4.4e-10   39.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00012   22.0   0.0    0.00017   21.5   0.0    1.2  1  FR47             FR47-like protein
     0.0011   19.0   0.0      0.024   14.8   0.0    2.0  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.025   14.5   0.0    1.3  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
      0.031   14.4   0.0      0.036   14.2   0.0    1.1  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.078   13.4   0.0      0.097   13.1   0.0    1.0  1  DUF3842          Domain of unknown function (DUF3842)
       0.15   11.5   0.0       0.32   10.4   0.0    1.7  1  Acetyltransf_15  Putative acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1   6.4e-15   1.3e-11      49     117 ..       2      68 ..       1      75 [. 0.81

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 6.4e-15
  Acetyltransf_10  49 rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFkavgeeqeenG 117
                      ++++ ++ l+V+p+y+g+G+g+aLleav++++   g   +l++ + + +a+ fY ++G+k++++ + e+G
       EHU00215.1   2 ENDNFLHSLYVAPDYQGRGLGSALLEAVQSRFTSTG---ALKCLQMNkAAQTFYLQHGWKVISQGESEQG 68 
                      678899*************************95443...5777777769*************66555555 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.5e-14     7e-11      27      75 ..       7      58 ..       1      59 [. 0.69

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 3.5e-14
                    TEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7 27 itrlaVdpeyrgkGiGraLleaae.....kgiileqlel..naekaikfYeklGFe 75
                    ++ l+V+p+y+g+G+G+aLlea++     +g  l+   l  n+ +a+ fY ++G++
      EHU00215.1  7 LHSLYVAPDYQGRGLGSALLEAVQsrftsTGA-LK--CLqmNK-AAQTFYLQHGWK 58
                    445******************84434444452.22..222133.7899******97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   2.2e-13   4.4e-10      62     117 .]       6      57 ..       1      57 [. 0.88

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.2e-13
                     EEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  62 yieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                     +++sl+V+p+y+g+GlGsaLlea+  r+ + g+ k +       n+aa+ +Y ++G+
      EHU00215.1   6 FLHSLYVAPDYQGRGLGSALLEAVQSRFTSTGAlKCLQM-----NKAAQTFYLQHGW 57 
                     799****************************99455555.....********88885 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   8.6e-08   0.00017      22      80 ..       5      60 ..       2      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 8.6e-08
                SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47 22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80
                 +l +l+v p+ ++rGlgs l +a+  +    g    l   + N++++ +y + G+++i
  EHU00215.1  5 NFLHSLYVAPDYQGRGLGSALLEAVQSRFTSTGALKCL---QMNKAAQTFYLQHGWKVI 60
                57999**********************99998875555...568888888888887776 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-05     0.024      28      53 ..       8      33 ..       2      39 .. 0.83
   2 ?    2.5   0.0     0.082   1.6e+02      45      62 ..      44      61 ..      42      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
  Acetyltransf_CG 28 thTeVpeelrGkGiAkkLvkaaldda 53
                     +  +V + ++G+G++++L +a+    
       EHU00215.1  8 HSLYVAPDYQGRGLGSALLEAVQSRF 33
                     5679****************997665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.082
  Acetyltransf_CG 45 Lvkaalddareeglkvvp 62
                     + kaa  +  ++g+kv+ 
       EHU00215.1 44 MNKAAQTFYLQHGWKVIS 61
                     5688999999******85 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05     0.025       8      40 ..       8      40 ..       7      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  Acetyltransf_13  8 sriWvssshRrkgiAtkLldaarenfiyglele 40
                     + ++v+++++ +g+ ++Ll+a++++f+ +  l+
       EHU00215.1  8 HSLYVAPDYQGRGLGSALLEAVQSRFTSTGALK 40
                     6799**********************9976664 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.8e-05     0.036      79     127 ..      10      59 ..       5      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
                     EEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.SSHHHHHTTT-EE CS
  Acetyltransf_9  79 VavapehrgrgvlskLlaraleemreegqplsllfP.ssipiYrrfGyei 127
                       vap+++grg+ s+Ll+++  +  + g+   l +  ++ ++Y + G+++
      EHU00215.1  10 LYVAPDYQGRGLGSALLEAVQSRFTSTGALKCLQMNkAAQTFYLQHGWKV 59 
                     569***********************998777777766799*******87 PP

>> DUF3842  Domain of unknown function (DUF3842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.8e-05     0.097       6      56 ..      15      65 ..      12      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.8e-05
     DUF3842  6 DgqGggiGkelveklkkelpeeveilalGtNalatsamlkaganegatGen 56
                D qG g+G++l+e+++++++++  + +l  N++a +  l+ g +    Ge+
  EHU00215.1 15 DYQGRGLGSALLEAVQSRFTSTGALKCLQMNKAAQTFYLQHGWKVISQGES 65
                789*********************************999999988888885 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00016      0.32      76      99 ..       8      31 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
  Acetyltransf_15 76 YtlyvsekyrgkGlakklLeeslk 99
                      +lyv ++y+g+Gl   lLe   +
       EHU00215.1  8 HSLYVAPDYQGRGLGSALLEAVQS 31
                     689**************9997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 564.28
//
Query:       EHU00216.1  [L=370]
Description: antiporter inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-97  326.3   0.0    1.4e-97  326.0   0.0    1.1  1  ParA            NUBPL iron-transfer P-loop NTPase
      8e-10   38.9   0.0    1.8e-09   37.8   0.0    1.7  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
      1e-08   35.3   0.1    2.3e-07   30.9   0.0    2.1  2  AAA_31          AAA domain
      2e-08   33.9   0.0    3.3e-08   33.1   0.0    1.3  1  MipZ            ATPase MipZ
    1.7e-05   24.4   0.0     0.0035   16.8   0.0    2.3  2  Fer4_NifH       4Fe-4S iron sulfur cluster binding proteins, 
    0.00071   19.7   0.0     0.0018   18.4   0.0    1.7  1  FeS_assembly_P  Iron-sulfur cluster assembly protein
  ------ inclusion threshold ------
      0.012   14.9   2.5      0.031   13.5   0.3    2.3  2  ArsA_ATPase     Anion-transporting ATPase
      0.018   14.3   0.1      0.034   13.4   0.1    1.4  1  VirC1           VirC1 protein


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.0   0.0  6.4e-101   1.4e-97       2     245 ..     107     350 ..     106     351 .. 0.98

  Alignments for each domain:
  == domain 1  score: 326.0 bits;  conditional E-value: 6.4e-101
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs.ekkliPveakgikvmSigfllesedeavvwrGpmkska 99 
                 vk++iav+SgKGGVGKS++avn+AlaL ++g++vg+lDaDiyGps+p++lg+e+e+p++   +++ P++++g+ + Sig+l++ +d+a+vwrGpm+ska
  EHU00216.1 107 VKNIIAVSSGKGGVGKSSTAVNMALALLAEGARVGILDADIYGPSVPNMLGCEKERPTSPdGTHMAPIMSHGLATNSIGYLVT-DDNAMVWRGPMASKA 204
                 9*******************************************************9998556799****************9.9************** PP

        ParA 100 ikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggekla 198
                 + qll++++w +lDyL++D+PPGtgD+qlt+aq++p++ga++Vttpq++al+d++k++ mf+kv+v+vlGvveNms++vc++cg+++ ifg+gg+++l 
  EHU00216.1 205 LMQLLTETQWPDLDYLVLDMPPGTGDIQLTLAQSVPVTGALVVTTPQDIALIDARKGMVMFEKVNVPVLGVVENMSIHVCSQCGHHEPIFGTGGAQRLV 303
                 *************************************************************************************************** PP

        ParA 199 eelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 +++g++ll+++pl+ ++re  d+g+p+v+++p+se a  ++++a +v
  EHU00216.1 304 DDYGTRLLAQLPLHIHLREDLDDGEPTVIRRPDSEFAMLYRQLAGRV 350
                 *****************************************999876 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   7.8e-13   1.8e-09       1      80 [.     111     276 ..     111     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7.8e-13
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ia+ s+kGGvGK+++a+n+a al  +g rV  +DaD  +++     g e+++ +                                             
  EHU00216.1 111 IAVSSGKGGVGKSSTAVNMALALLAEGARVGILDADIYGPSVPNMLGCEKERPTspdgthmapimshglatnsigylvtddnamvwrgpmaskalmqll 209
                 799*************************************99965555555555888888888888888888888888888888888888888888888 PP

                 ...............................................CCHCCCHHHHHHCHCHHHH..EEEEE CS
                 ...............................................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...............................................dlkrllellealgkkkalllkiagvv 80 
                                                                d+ ++  ++e++  +      ++gvv
  EHU00216.1 210 tetqwpdldylvldmppgtgdiqltlaqsvpvtgalvvttpqdialiDARKGMVMFEKVNVP------VLGVV 276
                 88888888888888888888888888888888888888888877777666666666666644......44444 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     1e-10   2.3e-07       2      40 ..     109     147 ..     108     171 .. 0.92
   2 ?    2.4   0.0      0.06   1.3e+02     114     133 ..     213     232 ..     178     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1e-10
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDp 40 
                  +Ia++  KGGvGK+ t+vn+a al  +g +v + D+D 
  EHU00216.1 109 NIIAVSSGKGGVGKSSTAVNMALALLAEGARVGILDADI 147
                 59***********************************96 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.06
      AAA_31 114 vkdeYDyiiiDcpPsLgllt 133
                    + Dy ++D+pP  g + 
  EHU00216.1 213 QWPDLDYLVLDMPPGTGDIQ 232
                 34578*********877553 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.5e-11   3.3e-08       2     120 ..     110     238 ..     109     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.5e-11
                 EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHHHHHH...HHHHT--......----EEE-SSS-HHHHTTS-HHHHHHHHHH CS
        MipZ   2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylenraat...aerkgls......Lplpealalseaeeaeveeeeeaevaelee 91 
                 +i ++  kGG Gks tav +a aLl++Garv+ +d d+   ++   l+  +++    + ++++      L++ ++  l + ++a v ++  a+ a ++ 
  EHU00216.1 110 IIAVSSGKGGVGKSSTAVNMALALLAEGARVGILDADIYGPSVPNMLGCEKERptsPDGTHMApimshgLATNSIGYLVTDDNAMVWRGPMASKALMQL 208
                 789999*************************************99998655541114444443222233566666667777888888888888777888 PP

                 HHHHHHHH-SEEEEE--.SS--HHHHHHHH CS
        MipZ  92 lvadleaeldfividtP.Gsdsalsrlahs 120
                 l++ +  +ld++v+d P G+ +    la+s
  EHU00216.1 209 LTETQWPDLDYLVLDMPpGTGDIQLTLAQS 238
                 88888999*******863665555555554 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.6e-06    0.0035       6      37 ..     115     146 ..     109     163 .. 0.83
   2 !    5.4   0.0    0.0047        11     193     256 ..     299     365 ..     259     370 .] 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.6e-06
   Fer4_NifH   6 yGkGGiGksttsqnlsaalaemgkkvlivGCD 37 
                  GkGG+Gks t+ n++ al + g +v i+  D
  EHU00216.1 115 SGKGGVGKSSTAVNMALALLAEGARVGILDAD 146
                 59***********************9887766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0047
   Fer4_NifH 193 iekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkilen...kklviPkpl 256
                 +++++++ gt++l+ +P++ ++r+     + ++   p+se a  yr+la +++ +   +  viP ++
  EHU00216.1 299 AQRLVDDYGTRLLAQLPLHIHLREDLDDGEPTVIRRPDSEFAMLYRQLAGRVAAQlywQGEVIPGDI 365
                 6889999****************9998888888889***************9987222345666655 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     8e-07    0.0018       2      69 ..      16      81 ..      15      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8e-07
                    HHHHHHHTT-B-TTTSSBCCCCT---EEEE-T-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT--E CS
  FeS_assembly_P  2 eavlaaLrtVtDPelgvdlvslglvreidieggkVsvditltypacslaeairadaeaalralpgvev 69
                    + v  +L+    P l+++l+ l++++ +++ +g+ ++ ++++++  s++e ++ad  a l  l g   
      EHU00216.1 16 AVVAGVLNGFEHPTLQRNLITLKALHHVALLDGTLHIELRMPFAWHSAFETLKADTSAELLRLSG--A 81
                    567889999999**************************************************999..4 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   1.4e-05     0.031       6      36 ..     114     144 ..     108     148 .. 0.83
   2 ?    0.6   0.1      0.11   2.5e+02     112     137 ..     204     230 ..     198     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
                  EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE CS
  ArsA_ATPase   6 vgGKGGVGKttvsaatavklsekgkkvllis 36 
                   +GKGGVGK++ +  +a+ l  +g +v ++ 
   EHU00216.1 114 SSGKGGVGKSSTAVNMALALLAEGARVGILD 144
                  48*****************988888887765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
                  HHHHHHHHHHCSSSSEEEEESBS.CCH CS
  ArsA_ATPase 112 sfeellkyvkeeeydvvvlDtaP.TGh 137
                  ++++ll +++  + d++vlD +P TG+
   EHU00216.1 204 ALMQLLTETQWPDLDYLVLDMPPgTGD 230
                  567777777788899999999995554 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.5e-05     0.034       2      40 ..     109     147 ..     108     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
       VirC1   2 klitfcslkGGaGkttalmglcsalasdgkrvalfeade 40 
                 ++i+++s kGG Gk+++ + +  al ++g rv++++ad 
  EHU00216.1 109 NIIAVSSGKGGVGKSSTAVNMALALLAEGARVGILDADI 147
                 68999**********99999999**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2753.63
//
Query:       EHU00217.1  [L=677]
Description: methionyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.5e-162  540.1   0.0   3.1e-162  539.8   0.0    1.1  1  tRNA-synt_1g  tRNA synthetases class I (M)
    9.6e-22   76.9   0.0      2e-21   75.9   0.0    1.6  1  tRNA_bind     Putative tRNA binding domain
    8.7e-16   57.3   1.6    2.4e-10   39.3   0.1    2.5  3  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    6.6e-11   42.1   0.3    0.00016   21.1   0.0    2.4  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
      3e-06   26.4   0.0    0.00047   19.2   0.0    2.2  2  tRNA-synt_1f  tRNA synthetases class I (K)
    0.00084   19.3   0.0     0.0017   18.4   0.0    1.5  1  Anticodon_1   Anticodon-binding domain of tRNA


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  539.8   0.0    1e-165  3.1e-162       1     390 [.       8     396 ..       8     397 .. 0.98

  Alignments for each domain:
  == domain 1  score: 539.8 bits;  conditional E-value: 1e-165
                   EEEEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHH CS
  tRNA-synt_1g   1 vlvttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehk 97 
                   +lvt+alpYang++HlGh+le+i+aDi++Ry+r+rg++v+f+c++D+hGtpi+lkA++ g+ pe++++++++e++++f+ +nis+d+y++t+ +e++
    EHU00217.1   8 ILVTCALPYANGSIHLGHMLEHIQADIWVRYQRMRGNQVYFICADDAHGTPIMLKAQQLGIAPEQMIAEMKHEHETDFAGFNISYDNYHSTHGDENR 104
                   69*********************************************************************************************** PP

                   HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHHH CS
  tRNA-synt_1g  98 elvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfekk 194
                   el+  i+ +lke+g+i++++i+qly+p++++flpdr+v+gtCPkck+ +++gd+ce c+++++pteli+pks++sg++p+++++eh+ff+l++f ++
    EHU00217.1 105 ELAGLIYGRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKAPDQYGDNCEVCSATYSPTELIDPKSVVSGATPVLRDSEHFFFDLPSFCEM 201
                   ************************************************************************************************* PP

                   HHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SS.S-EETTECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G--S......EEEEEG CS
  tRNA-synt_1g 195 lkewieeeekeleenvkkivkewlkegLkdlaisrdldw.GipvPgaekkvlYVWldAligYisatkelakkkgeeekwkeyWakdkevelvhfigk 290
                   l++w+++    l+e+v ++++ew+++gL++++isrd+++ G+++Pga++k++YVWldA+igY+ a+k+l++k+  + +++e+W++d+ +el+hfigk
    EHU00217.1 202 LRAWTRSGA--LQEQVANKMQEWFESGLQQWDISRDAPYfGFEIPGAPGKYFYVWLDAPIGYMGAFKNLCDKR-GDISFDEFWQQDSTTELYHFIGK 295
                   *****5555..9**********************************************************666.578******************** PP

                   GGHHHHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE-HHHHHHHHHHHCCCHHHHH CS
  tRNA-synt_1g 291 diikFHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldfswedfvervNseLadklgnl 386
                   di++FH++fwPa+l+g+++++p+++++h+y+tv+g+K+SkSrg+++ka+ +l++ldad lRYy+aa  +++ +D+d+++edfv+rvN+++++k++nl
    EHU00217.1 296 DIVYFHSLFWPAMLEGSGFRKPNNLFVHGYVTVNGAKMSKSRGTFIKASIWLQHLDADSLRYYYAAkLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 392
                   *****************************************************************9788999************************* PP

                   HHHH CS
  tRNA-synt_1g 387 vnRv 390
                   ++R+
    EHU00217.1 393 ASRN 396
                   ***7 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   6.7e-25     2e-21       1      95 [.     581     674 ..     581     675 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 6.7e-25
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEETTSESEEETTEEESSEE-EEECCESSCEEEEEESST--TTC CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvvanlkpkklrGveSeGMilsaeeldekevgilelpadveaGe 95 
                 +rv+ + +ae + ++dkLl+l++d+G+e+ rqi+sg++  y+ p +lv+k+ ++vanl p+k+r+  SeGM+lsa    +k+  +l+++  + +G 
  EHU00217.1 581 MRVALIEKAELVDGSDKLLRLELDLGGEK-RQIFSGIRAAYPdPAVLVGKMTIIVANLAPRKMRFGVSEGMVLSAGP-GGKDLFVLSVDSGAVPGM 674
                 79***************************.**********************************************7.9999*******9999986 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   8.1e-14   2.4e-10      24      97 ..       7      79 ..       1     105 [. 0.84
   2 ?   -2.7   0.1      0.42   1.3e+03     482     497 ..     214     229 ..     205     244 .. 0.65
   3 !   16.9   0.0     5e-07    0.0015     548     600 ..     318     371 ..     294     373 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 8.1e-14
  tRNA-synt_1 24 efilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgr 97
                 +  ++   Py++Gs+H+Gh+l+++  di +ry+rm+G++v +    D +G +i  k + +lg+  ++  +++ +
   EHU00217.1  7 KILVTCALPYANGSIHLGHMLEHIQADIWVRYQRMRGNQVYFICADDAHGTPIMLKAQ-QLGIAPEQMIAEMKH 79
                 55666677*********************************************98864.567766666666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.42
  tRNA-synt_1 482 kdedvlDvWFsSgswp 497
                  ++ + +  WF+Sg+ +
   EHU00217.1 214 QVANKMQEWFESGLQQ 229
                  5555566677776643 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 5e-07
  tRNA-synt_1 548 kevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli..lsdvgrdin 600
                  ++++vhg v+  +G KmSKs g  i+ +  ++++ ad+lR++ +  ls+   di+
   EHU00217.1 318 NNLFVHGYVT-VNGAKMSKSRGTFIKASIWLQHLDADSLRYYYAakLSSRIDDID 371
                  47899**997.57****************************98866667666665 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.3e-07   0.00098      16     120 ..      14     119 ..       2     131 .. 0.85
   2 !   21.1   0.0   5.4e-08   0.00016     214     282 ..     294     361 ..     289     379 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.3e-07
                   EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHH CS
  tRNA-synt_1e  16 GptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptleprvsekvdeiielv 112
                    p +   +hlGh  + +  Di  r+ +++g +v f+         i+++a++ +   +++ +++ +e+++d++  n+   ++++   ++  e+ +l+
    EHU00217.1  14 LPYANGSIHLGHMLEHIQADIWVRYQRMRGNQVYFICADDAHGTPIMLKAQQLGIAPEQMIAEMKHEHETDFAGFNISYDNYHSTHGDENRELAGLI 110
                   45667789****************************987777789********************************99999988888888888877 PP

                   H.HHHHTTS CS
  tRNA-synt_1e 113 e.kliekgy 120
                     +l e+g+
    EHU00217.1 111 YgRLKENGF 119
                   425666665 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 5.4e-08
                   EGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 214 GiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                   G+D+++ h     a+ e    ++  + f+h g+++++g kmsks + fi+    l++ d+  lR++ + 
    EHU00217.1 294 GKDIVYFHSLFWPAMLEGSGFRKPNNLFVH-GYVTVNGAKMSKSRGTFIKASIWLQHLDADSLRYYYAA 361
                   566666666666666666655677788888.9*********************************9765 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0036        11      34      69 ..      18      53 ..       6      57 .. 0.91
   2 !   19.2   0.0   1.6e-07   0.00047     263     322 ..     314     373 ..     307     388 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0036
  tRNA-synt_1f 34 SGliHiGnlrevltadlvaralrkrgeevrlilisD 69
                   G+iH+G + e ++ad+ +r  r rg++v +i+  D
    EHU00217.1 18 NGSIHLGHMLEHIQADIWVRYQRMRGNQVYFICADD 53
                  59***************************9998765 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.6e-07
  tRNA-synt_1f 263 geaPekv.vYelillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldld 322
                   +++P ++ v  +++++g  kms+S+G+++  + wl+ +  ++lr++++ +   +  ++dl+
    EHU00217.1 314 FRKPNNLfVHGYVTVNGA-KMSKSRGTFIKASIWLQHLDADSLRYYYAAKLSSRIDDIDLN 373
                   556655414455666555.*****************************9555554455544 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.5e-07    0.0017       8      88 ..     421     502 ..     414     547 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.5e-07
  Anticodon_1   8 lnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk...raaqevllevletllrllaPfmPfitEel 88 
                  + ++ +++ ea ++ +f++a+++++ +   dl++ y++   p+   +++  +   +a+ ++   +++ l+ +l P++P ++E +
   EHU00217.1 421 FLDASEKIGEAWASREFSRAIREIMAL--ADLANRYVDEQAPWVVAKQEGRDadlQAICSMGINLFRVLMTWLKPVLPSLSERA 502
                  55677899999***************8..9*************9776655555533355888999****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5013.59
//
Query:       EHU00218.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00218.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00218.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00218.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00218.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00218.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00218.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00218.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00218.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00218.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00218.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00218.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00218.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00218.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00218.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00218.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00218.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00218.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2482.11
//
Query:       EHU00219.1  [L=100]
Description: antiholin-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-26   90.6   9.8    5.2e-26   90.4   9.8    1.0  1  LrgA      LrgA family


Domain annotation for each model (and alignments):
>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   9.8   2.9e-30   5.2e-26      11      92 ..       2      83 ..       1      85 [. 0.97

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 2.9e-30
        LrgA 11 lplpiPgsviGlllLlllLltkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtgl 92
                lp+++Pgs+iG+l+L++lL+++iv++++v+++++++++++allFvP+ vgvm+y dll a++ +i+v+++vst++vl ++gl
  EHU00219.1  2 LPITLPGSIIGMLILFTLLASQIVPVHWVKPGCHLIIRYMALLFVPISVGVMNYTDLLTAQFGPIVVSCLVSTFAVLGIVGL 83
                899***************************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 833.94
//
Query:       EHU00220.1  [L=230]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-74  250.3  20.9    1.6e-74  250.1  20.9    1.0  1  LrgB            LrgB-like family
  ------ inclusion threshold ------
       0.85    9.9  11.9       0.22   11.8   1.7    3.5  3  Transgly_assoc  Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1  20.9   1.8e-78   1.6e-74       1     213 [.      11     223 ..      11     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 250.1 bits;  conditional E-value: 1.8e-78
        LrgB   1 TllaYllakalykklkkpllnPvlvaivliillllllgisyetYkegakllsllLgpatVaLAvpLYkqrellkknllaillgllvgslvsllsavlla 99 
                 Tl a++la++l + lk++llnP+lv++++ii +llll+++y++Y++g+++l++lL+pa+VaLA+pLY+q++++++++++i+ ++l+gsl++++s  ++a
  EHU00220.1  11 TLGAFFLARRLAAALKIALLNPLLVSMAIIIPILLLLQLPYTRYFAGSQVLNALLQPAVVALALPLYEQMHQIRARWKSIIGVCLIGSLTAMTSGTAIA 109
                 89************************************************************************************************* PP

        LrgB 100 kllglseelllsllpkSvTtpiAmevseelgGipsltavlviltGilGallgelllkllrikdpvarGlalGtashaiGtakalelgeeagafsslamv 198
                  ++g+++e+++++lpkSvTtpiAm+vs +l+Gip++ a++v+++G+lGa++g+++l+ll++k+++arGla+G asha+Gta+a+el+ ++gafssla+v
  EHU00220.1 110 LWMGATPEIAATILPKSVTTPIAMAVSGSLHGIPAISAICVLIAGVLGAVFGHMVLNLLGVKSKAARGLAIGNASHALGTARAAELDFQEGAFSSLALV 208
                 *************************************************************************************************** PP

        LrgB 199 laGiltallaplllk 213
                 ++Gi+t+llap++++
  EHU00220.1 209 ICGIVTSLLAPFVFP 223
                 ***********9986 PP

>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.36   3.3e+03       9      28 ..      90     109 ..      89     122 .. 0.57
   2 ?   11.8   1.7   2.4e-05      0.22       2      21 ..     152     174 ..     151     188 .. 0.82
   3 ?    3.9   0.2     0.007        63       1      18 [.     208     225 ..     208     230 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
  Transgly_assoc   9 fvGgfllgllgigvgggela 28 
                     ++G  l g+l   ++g  +a
      EHU00220.1  90 IIGVCLIGSLTAMTSGTAIA 109
                     56666655555545554444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.4e-05
  Transgly_assoc   2 ilGivGAfvGgfllgllgi...g 21 
                     i+G++GA+ G ++l+llg+   +
      EHU00220.1 152 IAGVLGAVFGHMVLNLLGVkskA 174
                     99****************96433 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.007
  Transgly_assoc   1 IilGivGAfvGgfllgll 18 
                     +i+Giv ++++ f+++ll
      EHU00220.1 208 VICGIVTSLLAPFVFPLL 225
                     599************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1771.13
//
Query:       EHU00221.1  [L=294]
Description: cytidine/deoxycytidine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-41  140.2   0.6    4.5e-41  140.2   0.6    2.2  2  dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-
    8.8e-13   48.0   0.5    1.3e-11   44.3   0.1    2.1  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
  ------ inclusion threshold ------
        0.1   12.3   0.1       0.19   11.5   0.1    1.4  1  MafB19-deam      MafB19-like deaminase
       0.14   12.1   0.0       0.23   11.4   0.0    1.3  1  Pput2613-deam    Pput_2613-like deaminase
       0.26   11.4   2.3       0.57   10.3   2.3    1.5  1  SLATT_3          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4      0.16   5.6e+02      54     105 ..      60     113 ..       9     124 .. 0.50
   2 !  140.2   0.6   1.3e-44   4.5e-41       1     132 [.     157     276 ..     157     277 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
                      HHTT-B-TTT---EEEEEEETTS-EEEEE-B--T..TSTT-B-HHHHHHHHHHH CS
  dCMP_cyt_deam_2  54 aanasyapyskcpsGvaLvtkdgkvyaGsyiEsa..AfNpsLpPlqaAlvalvl 105
                      aa  + a  s+   G      +g++y G  +E a      + ++ q+A+ ++ l
       EHU00221.1  60 AAACAVASLSRFNVGAIARGISGNWYFGANMEFAgaTMQQTVHAEQSAVTHAWL 113
                      222333334444444444445677788887775411455666777777776666 PP

  == domain 2  score: 140.2 bits;  conditional E-value: 1.3e-44
                      HHHHSTT--SGGGGTS-S...-BTS----------........S-HHHHHHHHHHTT-B-TTT---EEEEEEETTS-EEEEE-B--TTSTT-B- CS
  dCMP_cyt_deam_2   1 LsslLPhsFgPkdLlskeevpllleerdnklalkaeeeaeeekddelkeaAlaaanasyapyskcpsGvaLvtkdgkvyaGsyiEsaAfNpsLp 94 
                      L+++LP++FgP dL+++e    l+++ d+++ ++          d+l +aA++aan+s+apys+++sGva++t++g++++G+y+E+aAfNpsLp
       EHU00221.1 157 LAHYLPDAFGPGDLHITE---RLMDKVDHGFVVTG---------DALSQAAIDAANQSHAPYSRAFSGVAVQTASGRIFSGRYAENAAFNPSLP 238
                      789**************9...***********998.........89************************************************ PP

                      HHHHHHHHHHHTT--GGGEEEEEEEEETT-SS-SHHHH CS
  dCMP_cyt_deam_2  95 PlqaAlvalvlggkefeeieravLvekedakvsqeata 132
                      PlqaAl+ l+++g+++e i++a+L++ ++ +++q +++
       EHU00221.1 239 PLQAALILLNMAGESCEAIQAAALAQPRQPALDQYSAT 276
                      ********************************999988 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   3.6e-15   1.3e-11      19      93 ..      64     140 ..      47     146 .. 0.85
   2 ?    1.9   0.0     0.058   2.1e+02       7      47 ..     191     232 ..     187     278 .. 0.65

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.6e-15
                      H..TTTSCSEEEEEEETTEEEEEEESBHHCCTG..TTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHHHHHHHHHHT CS
  dCMP_cyt_deam_1  19 q..kcsnfkVGavivkngeiistgyngepaggs..ktiHAEvnAilkaaknggsklegatlyvtlePCsmCakaiiqsg 93 
                           s+f+VGa+        + g+n+e+ag +  +t+HAE++A+++a+ +g+ +l   t+ v+++PC++C++++++++
       EHU00221.1  64 AvaSLSRFNVGAIARGISGNWYFGANMEFAGATmqQTVHAEQSAVTHAWLRGEARL--ETITVNYTPCGHCRQFMNELN 140
                      224789********9977999*********998889*************9987788..9****************9976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.058
                      HHHHHHHHHHHHH.TTTSCSEEEEEEE.TTEEEEEEESBHHCC CS
  dCMP_cyt_deam_1   7 llelalkaakeaq.kcsnfkVGavivk.ngeiistgyngepag 47 
                      l + a++aa++++ ++s+  +  v v+    +i+ g   e+a 
       EHU00221.1 191 LSQAAIDAANQSHaPYSR-AFSGVAVQtASGRIFSGRYAENAA 232
                      678999999999955555.455555554555555554444443 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.3e-05      0.19      30      86 ..      80     133 ..      59     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
  MafB19-deam  30 vkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCa 86 
                  + ++  ++ + ++     + t HaE  a+  A   +++      t+ v   pC+ C 
   EHU00221.1  80 ISGNWYFGANMEFAGATMQQTVHAEQSAVTHAWLRGEAR---LETITVNYTPCGHCR 133
                  47788899999999999***************6665555...558889999*****3 PP

>> Pput2613-deam  Pput_2613-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05      0.23      50      96 ..     102     147 ..      75     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.4e-05
  Pput2613-deam  50 htearivrelslqqllGdvlvidGqyaPCssCkGkmrvaseetgakv 96 
                    h e+ +v +  l+    +   i  +y+PC +C+  m+  ++ t +++
     EHU00221.1 102 HAEQSAVTHAWLRG-EARLETITVNYTPCGHCRQFMNELNSGTAIRI 147
                    66666666555554.4566689999************9888777666 PP

>> SLATT_3  SMODS and SLOG-associating 2TM effector domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.3   0.00016      0.57       6      48 ..      34      77 ..      31     125 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
     SLATT_3  6 aaDeaslsgqreylrllrlrlvllvvAAlaaalslkv.gsvdla 48
                +aD++ l +q++ l + +l l+ll vAA++a++sl+  + + +a
  EHU00221.1 34 RADQVTLLQQQTQLDADALALALLPVAAACAVASLSRfNVGAIA 77
                69*****************************9997764222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2098.99
//
Query:       EHU00222.1  [L=565]
Description: malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.8e-105  350.2   0.3   9.5e-105  349.5   0.0    1.4  2  Malic_M   Malic enzyme, NAD binding domain
    6.9e-82  273.7   0.0    4.2e-81  271.1   0.0    2.0  2  malic     Malic enzyme, N-terminal domain
  ------ inclusion threshold ------
       0.08   13.3   0.0       0.24   11.8   0.0    1.8  1  HAD       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.91   5.4e+03      68      98 ..      43      73 ..      41      82 .. 0.78
   2 !  349.5   0.0  1.6e-108  9.5e-105       1     257 [.     271     530 ..     271     531 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.91
                TEE-BTT-S---TTTGGGSBS--SS--S... CS
     Malic_M 68 kGLltedrekleeekkpfakkkeelkeakdk 98
                +GLl e  e +ee++k+  ++ +++k+ +dk
  EHU00222.1 43 NGLLPEAVETIEEQAKRAWRQFQDFKNNNDK 73
                7999999999999999999999998877644 PP

  == domain 2  score: 349.5 bits;  conditional E-value: 1.6e-108
                 THHHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-S---TTTGGGSBS--SS--S.... CS
     Malic_M   1 iqgTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedrekleeekkpfakkkeelkeak... 96 
                 iqgTaav++++l+aa +++g++l eqk+v+lGaGsag+Giaeqi++++++eGls+eea++++ +vDr GLlt++  +l +++ ++++k+++lk+++   
  EHU00222.1 271 IQGTAAVTVGTLIAASRAAGSRLCEQKVVFLGAGSAGCGIAEQIIAQMKSEGLSDEEARSRVMMVDRFGLLTDKLPNLLDFQSKLVQKSDNLKDWDtas 369
                 9**********************************************************************************************9999 PP

                 ...SHHHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHH CS
     Malic_M  97 dkltLeevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifP 195
                 d ++L++vv+++kp++liG+sg++g+fteei+rem+k+++rPi++plSNPts++Eat++d+++wtdg+alva+GsPf+pv++ngkty i+Q+NN+yifP
  EHU00222.1 370 DAISLLDVVRNAKPDILIGVSGQPGLFTEEIIREMHKHCKRPIVMPLSNPTSRVEATPADIIAWTDGAALVATGSPFSPVSWNGKTYPIAQCNNSYIFP 468
                 *************************************************************************************************** PP

                 HHHHHHHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 196 glglgvivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 g+glgvi+++a+r+td+ml++a++ala++    + +eg++lPe+++i+ vs+ +a++v kaa
  EHU00222.1 469 GIGLGVIASGASRVTDTMLMTASRALADCSPLVNDGEGPVLPEIKDIQGVSKVIAMEVGKAA 530
                 **********************************************************9988 PP

>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.12     7e+02     147     174 ..      46      72 ..      36      78 .. 0.84
   2 !  271.1   0.0     7e-85   4.2e-81       1     182 []      81     261 ..      81     261 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHGCTSEEEE-S--CCHH CS
       malic 147 vdefveavkelfppkaliqfEDfkakna 174
                 + e ve+++e + ++a  qf Dfk++n 
  EHU00222.1  46 LPEAVETIEEQA-KRAWRQFQDFKNNND 72 
                 568899999999.999********9985 PP

  == domain 2  score: 271.1 bits;  conditional E-value: 7e-85
                 HTTECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-GHHHHHHHHHHHHHH CS
       malic   1 qeknetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlGvagvgimvGKlaLy 99 
                 q++netlfy+ll ++lee++pi+YtPtvg+ac+++se+yr+arg+++s+ ++e+i+++l+n+++++vkvivvtdgeriLGlGd+G++g+gi++GKl+Ly
  EHU00222.1  81 QDTNETLFYRLLDNHLEEMMPIIYTPTVGAACEHFSEIYRRARGVFISYPNREHIEDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLY 179
                 689************************************************************************************************ PP

                 HHHHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 100 talagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 ta++gi+P+ +lpvvldvgtnn++ll+dplY+G+r++R++geeydefv+ef++avk+++ pk+l+qfEDf++kna+ +leryr
  EHU00222.1 180 TACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRITGEEYDEFVNEFIQAVKRRW-PKVLLQFEDFAQKNAMPLLERYR 261
                 ***********************************************************.9*********************8 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.24      36     113 ..      81     158 ..      59     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
         HAD  36 eklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldp...galellaahraaGdrvvvvSgglrp 113
                 + + + lf+ ll++   +l+e++  ++ +  ++  +++ +++++++   + +p   ++ ++l+ + +++++v+vv+ g r+
  EHU00222.1  81 QDTNETLFYRLLDN---HLEEMMPIIYTPTVGAACEHFSEIYRRARGVFISYPnreHIEDMLQNATKQNVKVIVVTDGERI 158
                 45667778888888...9************************88887777556666*******999**********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4240.92
//
Query:       EHU00223.1  [L=239]
Description: uncharacterized DUF218 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-17   62.7   0.0    4.4e-17   62.3   0.0    1.1  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   2.4e-21   4.4e-17       3     109 ..      48     170 ..      46     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 2.4e-21
      DUF218   3 ivVLGaal........pllaeRldeaaelyrag...kiivsGggadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersillVTs 90 
                  vVLG+a         ++  +R++ a++ y+ g   ++++sG++a+++++e   m++ l++ gv++ +i+l+ ++  T +++++++++++ + ++++T+
  EHU00223.1  48 GVVLGTAKyyrtgvinQYYLYRMQGALNAYNSGkinYLLLSGDNAQQSYNEPMTMRRDLIKGGVDPADIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQ 146
                 599*9333456666888999*************7766******999*******************88**********************5469****** PP

      DUF218  91 afHmpRalllfrkag.......aptp 109
                  fH+ Ral+++ ++g       +  p
  EHU00223.1 147 RFHCERALFIALHLGiqaqcyaV--P 170
                 ***********999866555322..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1687.70
//
Query:       EHU00224.1  [L=336]
Description: membrane component of an ABC superfamily methyl-galactoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-50  169.8  36.8    6.3e-50  169.8  36.8    1.3  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
        5.8    7.0   6.9        5.1    7.2   0.5    2.6  2  DUF543        Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.51   4.6e+03      87     144 ..      20      27 ..       6      32 .. 0.40
   2 !  169.8  36.8     7e-54   6.3e-50       1     268 []      41     325 ..      41     325 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.51
  BPD_transp_2  87 itllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvla 144
                   ++ll                                                  ++la
    EHU00224.1  20 VVLL--------------------------------------------------VLLA 27 
                   2222..................................................2221 PP

  == domain 2  score: 169.8 bits;  conditional E-value: 7e-54
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl...........lllallvallvgaavglllgllvlrlkvdeli 86 
                   +++n+lt++++ +i+AlG+a ++ ++ + +l++g +++l+a+vaa ll++++++           +++++l+ +++ga++gl++g+++++lkv ++i
    EHU00224.1  41 NLSNILTQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAIVAASLLQAMDNPnkvfphletvpIPVVILIVCAIGAVIGLVNGVIIAYLKVTPFI 136
                   589********************.****************************99******************************************* PP

  BPD_transp_2  87 itllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsaviv...llalllvlavllllrrtrfGralravgeneeaaralGinvkrvkl 180
                   +tl+++++++g++ l++    + +      ++ ++f++ +l f+ + ++   + a++++++v++l+++trfG +++a+g+n+eaa+++G+nv+   +
    EHU00224.1 137 TTLGTMIIVYGINSLYYDF-VGASPIAGFYDGFSTFTQGFLRFGDFKLSyitFYAVIAIVFVWILWNKTRFGKNIFAIGGNPEAAKVSGVNVNLNLI 232
                   **************66654.44444577889999999999999999988899********************************************* PP

  BPD_transp_2 181 ltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   l +++sg++ ++ G+l a ++gs+  n g++++++aiaa+v+Gg+      g+++g+v G li+ v++  +lt++gi++ +++++ g ++i+++
    EHU00224.1 233 LIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVsfaggvGTVAGVVTGVLIFTVINY-GLTYIGINPYWQYIIKGGIIIFAV 325
                   *********************************************************************.*********************986 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.0      0.02   1.8e+02      29      58 ..     110     139 ..     108     143 .. 0.74
   2 ?    7.2   0.5   0.00057       5.1      32      47 ..     281     296 ..     256     303 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.02
      DUF543  29 lvkvglgllvGvvasvllfrrRaapvalGa 58 
                 l+ +++g+++G v +v+++  +  p +  +
  EHU00224.1 110 LIVCAIGAVIGLVNGVIIAYLKVTPFITTL 139
                 67799************9875555544444 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00057
      DUF543  32 vglgllvGvvasvllf 47 
                  g+g+++Gvv++vl+f
  EHU00224.1 281 GGVGTVAGVVTGVLIF 296
                 699***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2284.65
//
Query:       EHU00225.1  [L=506]
Description: ATP-binding component of an ABC superfamily galactose/methyl galactoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-48  163.9   0.3    8.2e-29  100.9   0.0    2.4  2  ABC_tran     ABC transporter
    1.9e-09   37.7   0.1     0.0032   17.3   0.0    3.3  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      0.001   18.7   0.0     0.0027   17.4   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
     0.0011   18.4   0.9      0.012   15.0   0.6    2.6  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0013   19.2   0.5     0.0051   17.3   0.1    2.2  2  AAA_23       AAA domain
     0.0016   18.3   0.0     0.0059   16.5   0.0    2.0  1  RsgA_GTPase  RsgA GTPase
     0.0038   16.8   0.0     0.0071   16.0   0.0    1.3  1  AAA_27       AAA domain
     0.0067   15.7   0.0       0.01   15.1   0.0    1.2  1  DUF2813      Protein of unknown function (DUF2813)
     0.0085   16.5   0.0      0.015   15.7   0.0    1.6  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.017   13.8   0.0        1.8    7.1   0.0    2.4  3  AAA_13       AAA domain
      0.048   13.4   0.2      0.048   13.4   0.2    1.9  3  AAA_15       AAA ATPase domain
      0.081   12.6   0.0       0.44   10.2   0.0    2.3  2  AAA_30       AAA domain
      0.092   12.8   0.0       0.31   11.1   0.0    1.9  1  MMR_HSR1     50S ribosome-binding GTPase
       0.16   12.3   0.2       0.47   10.7   0.2    1.9  1  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   6.4e-32   8.2e-29       1     137 []      29     178 ..      29     178 .. 0.96
   2 !   61.0   0.1   1.3e-19   1.7e-16       2     136 ..     280     434 ..     279     435 .. 0.80

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 6.4e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+nv+lk+++ +++a++GenGaGKStLlk+l g +k++ G+il++g++++   ++e l++ +++++qe +l  + tv +n                ++ 
  EHU00225.1  29 LDNVNLKVRPHSVHALMGENGAGKSTLLKCLFGIYKKDTGSILFQGQEIDFkSSKEALENGVSMVHQELNLVLQRTVMDNmwlgryprkgffvdqeKMY 127
                 79************************************************9789999**************99999****************9988888 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++ ++l+++ ++ ++v    ++LS  q q++++a+a+  ++k++++DEpt+
  EHU00225.1 128 RDTKAIFDELDINIDPRDKV----AHLSVSQMQMIEIAKAFSYDAKIVIMDEPTS 178
                 889***********999999....*****************************96 PP

  == domain 2  score: 61.0 bits;  conditional E-value: 1.3e-19
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 +++s++l++ge+++i G  Ga  + ++++l g  ++  G+i+l gk +++ +  e  ++ ++ +++e   + +   l                      
  EHU00225.1 280 RDISFDLRKGEILGIAGLVGAKRTDIVETLFGIREKSGGTIKLHGKTINNhTANEAINHGFALVTEErrsTGIYAFLD---Igfnslisnikkyknnig 375
                 689*********************************************997777888888888888833322222233...255577777877777899 PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                       ++++ + ++++++ k   +++   +  sLSgG +q+v + r ll++p++l+lDEpt
  EHU00225.1 376 lldnkRMKSDTQWVIDSMRVKTPGHHT---QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 434
                 877776666677777777766632222...35*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.5e-06    0.0032       2      59 ..      42      80 ..      41     118 .. 0.63
   2 !    7.8   0.0     0.002       2.6     173     297 ..     108     207 ..     102     212 .. 0.88
   3 !    9.4   0.0   0.00067      0.86     232     295 ..     402     463 ..     352     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfe 59
                 +l G Ng+GKS+LL++l ++                   ++k+++++ +   ei+f+
  EHU00225.1 42 HALMGENGAGKSTLLKCLFGI-------------------YKKDTGSILFQGQEIDFK 80
                5799**************776...................333333333333333333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
      AAA_21 173 adyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLH 271
                 ++++g +++k+++ + ++ +++  +  + l++ ++  ++v+++                      S  + +++ ++ a+ +++   ++++ DEp ++L 
  EHU00225.1 108 NMWLGRYPRKGFFVDQEKMYRDTKAIFDELDINIDPRDKVAHL----------------------SVSQMQMIEIAKAFSYDA---KIVIMDEPTSSLT 181
                 6778888889999999999999999999998888888888888......................777999999999999999...9************ PP

      AAA_21 272 PkllrrllellkelsrngaQviltTH 297
                  k + +l++++++l+++g  ++  +H
  EHU00225.1 182 EKEVNHLFTIIRKLKDRGCGIVYISH 207
                 ***********999999********9 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00067
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQvilt 295
                 +++ +lS G ++   +  +ll ++    +l +DEp  g++  +  ++++l+ el++ +++ +i++
  EHU00225.1 402 TQIGSLSGGNQQKVIIGRWLLTQP---EILMLDEPTRGIDVGAKFEIYQLMAELAKkEKGIIIIS 463
                 667788888888855555666655...9***********************88887344444555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06    0.0027      13      39 ..      30      56 ..      27      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+  +++++++++ l+G++G+GKSTll
  EHU00225.1 30 DNVNLKVRPHSVHALMGENGAGKSTLL 56
                66788999999***************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.6   9.6e-06     0.012      24     207 ..      39     218 ..      21     227 .. 0.68
   2 ?   -1.7   0.0       1.2   1.6e+03     137     140 ..     407     410 ..     294     474 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.6e-06
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.....BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.....skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingke 117
                 +s+ a++G+NG+GKs ll  + F + ++        ++ +++++      k+++++ +  v+++ ++ +      +  v  +  + r  +  +++++++
  EHU00225.1  39 HSVHALMGENGAGKSTLLKCL-FGIYKK--------DTGSILFQgqeidFKSSKEALENGVSMVHQELNLV---LQRTVMDNMWLGRYPRKGFFVDQEK 125
                 4589****************9.433333........33333333232223566666677777765544444...2223333333344444556777666 PP

                 E-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHH.HCCC-SC CS
                 xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
       SMC_N 118 vtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislree.mlekadk 207
                 + +++ + ++ + +i+++       LS  + +++ +a  f+      a ++++De  + L ek+v+ + +++++ +++ + ++ is++ e +++ +d+
  EHU00225.1 126 M-YRDTKAIFDELDINIDprdkvaHLSVSQMQMIEIAKAFSYD----AKIVIMDEPTSSLTEKEVNHLFTIIRKLKDRgCGIVYISHKMEeIFQLCDE 218
                 5.78999999999999999999999999999999999998764....56999********************99998857777789885415555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                 S-HH CS
                 xxxx RF
       SMC_N 137 LSgG 140
                 LSgG
  EHU00225.1 407 LSGG 410
                 4444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     4e-06    0.0051      20      42 ..      40      62 ..      22     198 .. 0.76
   2 ?   -0.9   0.0       1.5   1.9e+03     115     143 ..     300     328 ..     262     396 .. 0.49

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4e-06
      AAA_23 20 gltlItGpNGaGKTTildAikla 42
                 + ++ G+NGaGK+T+l ++  +
  EHU00225.1 40 SVHALMGENGAGKSTLLKCLFGI 62
                577899************99654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
      AAA_23 115 deleqfisellgskkiilnlilflgqerf 143
                 +++++++++l+g+++++   i ++g+  +
  EHU00225.1 300 AKRTDIVETLFGIREKSGGTIKLHGKTIN 328
                 44455555555555554444444444442 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.6e-06    0.0059      88     130 ..      27      70 ..       3      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.6e-06
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++l++++ +++  ++ +l+G+ G+GKStL++ l +  +  tg++
   EHU00225.1  27 KALDNVNLKVRPhSVHALMGENGAGKSTLLKCLFGIYKKDTGSI 70 
                  5666677777776899*****************99888888876 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.5e-06    0.0071      19      69 ..      32      78 ..      28      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.5e-06
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdnflhdakkLr 69
                ++++   +++h ++G N AGKst+l+     lfGi ++ + + l++ +++ 
  EHU00225.1 32 VNLKVRPHSVHALMGENGAGKSTLLK----CLFGIYKKDTGSILFQGQEID 78
                56777899***************997....589999999999999888765 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     8e-06      0.01      16      65 ..      31      84 ..      13     110 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8e-06
     DUF2813 16 rLSlsleentv..LiGENaWGKSSLldALslilnvekelyqFtlk..DFhvdes 65
                   l++++++v  L+GEN  GKS Ll+ L  i+++++    F+ +  DF  +++
  EHU00225.1 31 NVNLKVRPHSVhaLMGENGAGKSTLLKCLFGIYKKDTGSILFQGQeiDFKSSKE 84
                3467777776544*********************99886666655116664433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05     0.015      26      66 ..      41      82 ..      27     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
      AAA_16 26 lvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesa 66
                +  l Ge G GKs+l+++l+  ++kd g i+++g+  +++s+
  EHU00225.1 41 VHALMGENGAGKSTLLKCLFGIYKKDtGSILFQGQEIDFKSS 82
                55799***************9999995577788888888444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.012        16      22      45 ..      45      68 ..      38      96 .. 0.76
   2 ?    7.1   0.0    0.0014       1.8     526     555 ..     167     196 ..     155     223 .. 0.76
   3 ?   -3.5   0.0       2.2   2.8e+03     526     563 ..     424     458 ..     422     462 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
      AAA_13 22 YGwNGaGKTtLSrllrslelgete 45
                 G NGaGK+tL + l  + ++ t 
  EHU00225.1 45 MGENGAGKSTLLKCLFGIYKKDTG 68
                59*********9888776665554 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0014
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrl 555
                   kiv++D P SSL  + +++ f+ i++  
  EHU00225.1 167 DAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 196
                 679***********9988888888888765 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.2
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQ 563
                 + +i ++D P    D ++ f ++ l+ + +   kk k 
  EHU00225.1 424 QPEILMLDEPTRGIDVGAKFEIYQLMAELA---KKEKG 458
                 5789999*******************9998...44444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.8e-05     0.048      13      83 ..      28     145 ..      27     220 .. 0.67
   2 ?   -3.3   0.1       4.5   5.7e+03     107     124 ..     359     376 ..     320     389 .. 0.53
   3 ?   -2.4   0.0       2.4     3e+03     324     362 ..     425     463 ..     423     464 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
      AAA_15  13 slkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn..................................................kkviki 60 
                 +l++v +++ +  +  l G+N++GKS++l+ l  + ++    +                                                  k ++++
  EHU00225.1  28 ALDNVNLKVRPHsVHALMGENGAGKSTLLKCLFGIYKK----DtgsilfqgqeidfksskealengvsmvhqelnlvlqrtvmdnmwlgryprKGFFVD 122
                 5666666666667889****************444443....234567778888888888888888888888888888888888888888888666777 PP

      AAA_15  61 ekedleifeniseskdikIdvef 83 
                 +++ +++++ i  + di Id   
  EHU00225.1 123 QEKMYRDTKAIFDELDINIDPRD 145
                 77777777777777777777766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.5
      AAA_15 107 llkkkesdlkktikdkkl 124
                  ++ ++s +kk++++  l
  EHU00225.1 359 GFNSLISNIKKYKNNIGL 376
                 333333333333333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.4
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviit 362
                 + il+++EP   +   a+ ++++l++ela+++k+ +ii+
  EHU00225.1 425 PEILMLDEPTRGIDVGAKFEIYQLMAELAKKEKGIIIIS 463
                 678899999988888999999999999999999877776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00035      0.44      17      50 ..      38      71 ..      32     200 .. 0.79
   2 ?   -2.1   0.0         2   2.6e+03      99     140 ..     376     416 ..     372     432 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrvi 50
                ++ v++l G  G+GK+t+lk l  +++++ g+++
  EHU00225.1 38 PHSVHALMGENGAGKSTLLKCLFGIYKKDTGSIL 71
                567999****************999999865554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
      AAA_30  99 mvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdl 140
                 ++d+k +++ ++ + + +++v   G + Q +s + G++ + +
  EHU00225.1 376 LLDNKRMKSDTQWVID-SMRVKTPGHHTQIGSLSGGNQQKVI 416
                 5666666666666666.7888888999999998888877766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.31       3      39 ..      43      80 ..      41     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
                EEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.kaivsdkpgtTrdineg 39
                a++G   +GKStL++ l+g  k  ++++ +  ++i ++
  EHU00225.1 43 ALMGENGAGKSTLLKCLFGIyKKDTGSILFQGQEIDFK 80
                799***************97778888887777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00036      0.47       6      29 ..      40      63 ..      36     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
      AAA_22  6 gilvvtGesGtGKTtllrrlleql 29
                ++ +++Ge G+GK+tll+ l+  +
  EHU00225.1 40 SVHALMGENGAGKSTLLKCLFGIY 63
                56689*************998666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3403.13
//
Query:       EHU00226.1  [L=331]
Description: periplasmic-binding component of an ABC superfamily methyl-galactoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-65  220.5  15.7    3.1e-65  220.3  15.7    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    5.5e-11   42.4   3.3      2e-10   40.6   3.3    1.7  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.9e-08   33.8   0.3    9.4e-08   32.6   0.1    1.6  2  Peripla_BP_3  Periplasmic binding protein-like domain
     0.0021   18.3   0.2     0.0067   16.7   0.1    1.9  2  PucR          Purine catabolism regulatory protein-like famil
  ------ inclusion threshold ------
       0.12   12.2   3.8       0.14   11.9   0.7    2.0  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3  15.7   8.7e-69   3.1e-65       1     257 [.      28     299 ..      28     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 8.7e-69
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT....GCTT CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd....daps 93 
                   igv+++ ++++f+s +r+++e+ ak+lg+   +++d++nd+++Q++qi+ + akgv++++++ vd++a+a +++ka+a++IpVv+f+ +    + +s
    EHU00226.1  28 IGVTIYKYDDNFMSMVRKDIEKEAKTLGGIQLLMNDSQNDQSKQNDQIDVLMAKGVKALAINLVDPAAAAVVVQKARANNIPVVFFNKEpnakVLAS 124
                   899**************************99999*************************************************************** PP

                   T-CEEEEEC-HHHHHHHHHHHHHHHCTTH..........EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECC.EEESTTTCHHHHHHHHHHHHH CS
  Peripla_BP_4  94 gerlayvgfdneaaGelqaeylaeklggk.........kgkvvilaGspgdpnaeeriegfrkvlkeypgikiva.evaganwdaekaqqaleallt 180
                   +++++yvg+d++++G +q++++ +++++           +++v+l+G+pg+p+ae+r+++++++l++  g+k+ +   ++a+wd ++a+++++a+l+
    EHU00226.1 125 YDKAYYVGTDSKESGVIQGKLIEKHWKATpawdlnkdgVIQYVLLKGEPGHPDAEARTKYVIDTLNK-DGVKTQQlAMDTAMWDTAQAKDKMDAWLS 220
                   *******************************************************************.67777775456899*************** PP

                   .TT.T.ECEEEESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 181 .an.p.ldgilaandgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                    +n + +++++a+nd+ma+ga+eal+a +++ ++ v+g+Da peal+++k+G + +tv++d+ ++++a++++a++l++Gk
    EHU00226.1 221 gPNaKkIEVVIANNDAMAMGAVEALKAHNMSSIP-VFGVDALPEALALVKSGAMAGTVLNDAENQAKATIDMAKNLADGK 299
                   *66447*************************999.********************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   3.3   5.6e-14     2e-10       8     207 ..      32     253 ..      25     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 5.6e-14
                   ES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T.....TTS CS
  Peripla_BP_1   8 lpqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap.....dgv 95 
                   + + d+ f   + k i+k+ak +g   ll+++ ++++ +   +id l akg+++l i   d+     +++ka++ +ipv++ ++   a      d  
    EHU00226.1  32 IYKYDDNFMSMVRKDIEKEAKTLGGIQLLMNDSQNDQSKqnDQIDVLMAKGVKALAINLVDPAaAAVVVQKARAnNIPVVFFNKEPNAKvlasyDKA 128
                   344445565666689****************99998888779****************99999556677788889********99655566677333 PP

                   -EEEE-HHHHHHHHHHHHHHHHHHHT.........G...EEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-.. CS
  Peripla_BP_1  96 PcvipddtqageestqkLiaeghkrp.........i...allegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh.. 178
                     v  d ++ g  +++ Li++  k           +   +ll+g+  +  a++r++   ++l + G   ++  + +   d  +a++ + + l+ +  
    EHU00226.1 129 YYVGTDSKESGVIQGK-LIEKHWKATpawdlnkdgViqyVLLKGEPGHPDAEARTKYVIDTLNKDGVKTQQLAMDTAMWDTAQAKDKMDAWLSGPna 224
                   3344445555544443.4444333322544433342577999************************************************9986655 PP

                   TT-SEEE-SSHHHHHHHHHHHHHTT.--G CS
  Peripla_BP_1 179 PeidaivaindeaalGavlalkkeGrlki 207
                     i++++a+nd +a+Gav alk+++  +i
    EHU00226.1 225 KKIEVVIANNDAMAMGAVEALKAHNMSSI 253
                   5566*******************995555 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.83     3e+03      74      98 ..      84     108 ..      26     110 .. 0.51
   2 !   32.6   0.1   2.6e-11   9.4e-08      14     153 ..     166     305 ..     159     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.83
                   -SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3  74 lPtAviaasDelAlgvlqalreagl 98 
                   ++ A+   + ++A+ v+q +r+ ++
    EHU00226.1  84 KALAINLVDPAAAAVVVQKARANNI 108
                   2234444444555555566666555 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 2.6e-11
                   EEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEB CS
  Peripla_BP_3  14 figgegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqal.klaalPtAviaasDelAlgvlqalreaglrvPedlsvig 108
                   ++  +g+ g++ +++r++ + ++l + g++ ++   +++ +++a+a ++++ +l    ++++  + via++D++A+g+++al++++++    + v+g
    EHU00226.1 166 YVLLKGEPGHPDAEARTKYVIDTLNKDGVKTQQLAMDTAMWDTAQAKDKMDaWLSGPnAKKI--EVVIANNDAMAMGAVEALKAHNMS---SIPVFG 257
                   55566899999*********************999999999888888888866644444444..8**********************5...9***** PP

                   SS--SCC.CSSSS..--EEEE--HHHHHHHHHHHHHHHHTT---S--E CS
  Peripla_BP_3 109 fddsela.alssP..plTtvrqpleelGraaaellldllegekappeq 153
                   +d  ++a al+       tv  ++e  ++a +++   l +g++a++ +
    EHU00226.1 258 VDALPEAlALVKSgaMAGTVLNDAENQAKATIDMAKNLADGKPATEGT 305
                   **9999988888753348****************99999999888766 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.9e-06    0.0067      53     102 ..      65     115 ..      45     121 .. 0.87
   2 ?   -1.8   0.0      0.99   3.5e+03      54      76 ..     233     255 ..     176     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.9e-06
        PucR  53 kddpealaelvrelaeagvaaLviklg.reipeelieaadelglPlielpe 102
                 ++d++++ + ++ l ++gv aL+i+l  ++  + +++ a+++++P++ +++
  EHU00226.1  65 QNDQSKQNDQIDVLMAKGVKALAINLVdPAAAAVVVQKARANNIPVVFFNK 115
                 56999*********************636999**************98876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.99
        PucR  54 ddpealaelvrelaeagvaaLvi 76 
                 ++++  +  v++l++++++ + +
  EHU00226.1 233 NNDAMAMGAVEALKAHNMSSIPV 255
                 34455555666666666665544 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7     4e-05      0.14      59     150 ..      14     111 ..      12     112 .. 0.91
   2 ?    0.9   0.1     0.097   3.5e+02      73     141 ..     225     291 ..     221     302 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
                   HHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHH.....HHHHTCCTTTTSBB..BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEE CS
  TPP_enzyme_C  59 lmilqelatavrrnlpitvvvlnNegygmtggq.....qepfggkrksgpagk.dlkpvdfaklaealGakgarvekadveeleealkealekkgpa 149
                    m++ ++a+a+  ++ +t+  ++++ + m+++      ++  g +  ++++++ ++k+ d   +  a G+k++ ++  d++  + ++++a++++ p+
    EHU00226.1  14 SMMFGAVAHAADTRIGVTIYKYDDNFMSMVRKDiekeaKTLGGIQLLMNDSQNdQSKQNDQIDVLMAKGVKALAINLVDPAAAAVVVQKARANNIPV 110
                   58899****************************99999889999999998888658888************998899999***********999998 PP

                   E CS
  TPP_enzyme_C 150 l 150
                   +
    EHU00226.1 111 V 111
                   7 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.097
                   -SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHH CS
  TPP_enzyme_C  73 lpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealke 141
                    +i vv+ nN +++m   +  ++++ ++  + g d  p    +l+++  + g ++++a  ++ +++++ 
    EHU00226.1 225 KKIEVVIANNDAMAMGAVEALKAHNMSSIPVFGVDALP-EALALVKSGAMAGTVLNDA-ENQAKATIDM 291
                   47889999**9999987775555555555555444444.4555555443334333333.4555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2572.17
//
Query:       EHU00227.1  [L=346]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-34  119.7   0.1    3.4e-34  118.6   0.1    1.6  1  Peripla_BP_3   Periplasmic binding protein-like domain
    3.2e-23   82.6   0.1    4.3e-23   82.1   0.1    1.1  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    5.3e-20   71.0   2.1    1.8e-19   69.2   2.0    2.1  2  LacI           Bacterial regulatory proteins, lacI family
    2.6e-15   56.7   0.0    4.9e-15   55.8   0.0    1.5  1  Peripla_BP_4   Periplasmic binding protein domain
     0.0006   20.1   3.1    0.00063   20.0   0.5    2.3  2  HTH_31         Helix-turn-helix domain
    0.00079   19.4   0.0     0.0017   18.4   0.0    1.5  1  HTH_3          Helix-turn-helix
     0.0019   17.6   0.5     0.0061   16.0   0.5    1.9  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
  ------ inclusion threshold ------
       0.01   15.9   0.1      0.029   14.5   0.1    1.8  1  HTH_7          Helix-turn-helix domain of resolvase
      0.013   15.2   1.8      0.088   12.6   0.1    2.6  2  HTH_38         Helix-turn-helix domain
      0.019   14.7   1.0       0.58    9.9   0.2    2.4  2  Sigma54_DBD    Sigma-54, DNA binding domain
      0.019   14.7   0.1      0.067   13.0   0.1    2.0  1  HTH_23         Homeodomain-like domain
      0.027   14.9   0.0      0.066   13.7   0.0    1.7  1  HTH_26         Cro/C1-type HTH DNA-binding domain
      0.049   13.2   0.1       0.14   11.7   0.1    1.8  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.066   13.3   0.2       0.14   12.3   0.2    1.6  1  Trp_repressor  Trp repressor protein
      0.089   12.6   0.2       0.27   11.0   0.2    1.8  1  TetR_N         Bacterial regulatory proteins, tetR family
        0.1   12.4   0.0       0.24   11.2   0.0    1.7  1  HTH_IclR       IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.1   3.1e-37   3.4e-34       3     166 .]     170     329 ..     168     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 3.1e-37
                   HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   3 hLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.ll.qalklaalPtAviaasDelAlgvlqalreag 97 
                    L+++Gh ri++++  +++  +  d+r++g+ qa++e+g++++e ++a+++p+ +++ +a+  ll ++l  +    A++a++D +A+g+l+al++ g
    EHU00227.1 170 MLLQQGHSRIGYLC--SSHPIEDVDQRREGWLQAMAEQGIRPQESWIASAEPHMQGGEAAMVeLLgRNL--NL--SAIFAYNDGMAAGALTALKDNG 260
                   589***********..999999**************************************994224333..22..7********************* PP

                   --TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  98 lrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                   ++vP  +sv+gfdd++++++++P+lTtvr p+  +++ a el l+  +g   ++ ++  +p+ lv R+S+
    EHU00227.1 261 IQVPHHFSVVGFDDIPVSRYTDPQLTTVRYPIVSMAKLATELALQGAAGCLDTTAKHIfMPT-LVRRHSV 329
                   ***********************************************999999999995655.*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   3.8e-26   4.3e-23       2     233 ..      60     289 ..      59     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 3.8e-26
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH..T-EEEEESS--B-TTTS CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes..gipvialedaidapdgv 95 
                   +++g+v+ + ++Pff  lvk+++  a++    vl+ +   +e+ + +ai+ l  ++ ++l++   + s  ++    ++  g+ vi  +  ++++   
    EHU00227.1  60 DTIGVVVMDVSDPFFGALVKAVDTVAQRVQKHVLISNSWHQEEKErHAIEVLIRQRCNALVVHAKTLSDAELAGFMSQvpGMVVINRSIPGYEA--- 153
                   79****************************9999888888888888*****************9999977787666554788888888888888... PP

                   -EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHH CS
  Peripla_BP_1  96 PcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaa 192
                    cv  d+ + +  + + L+++gh r i  l   +    +++r++G+l+a+ae G   ++ ++a+  +++++++ a+ ell ++ +++ai a+nd +a
    EHU00227.1 154 RCVSLDNVTGALMASRMLLQQGHSR-IGYLCSSHPIEDVDQRREGWLQAMAEQGIRPQESWIASAEPHMQGGEAAMVELLGRNLNLSAIFAYNDGMA 249
                   8999*********************.9777777777799****************99**************************************** PP

                   HHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTS.....SS--SEE CS
  Peripla_BP_1 193 lGavlalkkeGrlkikeevdsfiesvvvydgLkk.....aqdtile 233
                   +Ga  alk +G ++ +        svv++d +       +q t++ 
    EHU00227.1 250 AGALTALKDNG-IQVPHHF-----SVVGFDDIPVsrytdPQLTTVR 289
                   ***********.9999999.....8888888722223335555554 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   2.0   1.6e-22   1.8e-19       1      46 []       3      48 ..       3      48 .. 0.99
   2 ?   -2.8   0.0       5.2   5.8e+03      35      45 ..     199     209 ..     195     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.6e-22
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti+DVAr+AGVS+aTVSrvLnn++ V +etr+ V++a++ l+Y+Pn
  EHU00227.1  3 TIRDVARQAGVSVATVSRVLNNSSAVTAETRDVVLQAVDALGYRPN 48
                8********************************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.2
                 HHHHHHTTB-T CS
        LacI  35 eaameelnYiP 45 
                 ++am+e++ +P
  EHU00227.1 199 LQAMAEQGIRP 209
                 59****98766 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   4.4e-18   4.9e-15       1     223 [.      62     279 ..      62     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 4.4e-18
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-E.EEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIp.Vvafdsddapsger 96 
                   igvvv d s+pff a+ ++++  a+   + v + +++  + +++  +ie +i + +++++v++   + ++  l+  +++ +p +v++++     g  
    EHU00227.1  62 IGVVVMDVSDPFFGALVKAVDTVAQRVQKHVLI-SNSWHQEEKERHAIEVLIRQRCNALVVHAKTLSDAE--LAGFMSQ-VPgMVVINRS--IPGYE 152
                   89************9999999999998887777.6888888*********************77665555..7777777.6658999999..88889 PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTT.TECEEEESS CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltan.pldgilaan 191
                   + +v+ dn + + ++ ++l+++  ++   + +l  s    +  +r eg  ++++e  gi   ++++  a+   + +  a+ +ll +n +l +i+a n
    EHU00227.1 153 ARCVSLDNVTGALMASRMLLQQGHSR---IGYLCSSHPIEDVDQRREGWLQAMAE-QGIRPQESWIaSAEPHMQGGEAAMVELLGRNlNLSAIFAYN 245
                   99********************9976...777799999999999**********9.666666666646679999999********9999******** PP

                   CCHHHCHHHHHHHTTTTSTEE..EEEES-HHHHH CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvv..vtgqDatpeal 223
                   dgma gal+al+++g++      v+g+D  p ++
    EHU00227.1 246 DGMAAGALTALKDNGIQVPHHfsVVGFDDIPVSR 279
                   ****************655444699999877664 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.5   5.6e-07   0.00063      16      58 ..       3      47 ..       2      54 .. 0.81
   2 ?   -1.0   0.1         2   2.3e+03      12      33 ..     195     216 ..     193     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.6e-07
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrp...spavlealaralgldp 58
                + ++vA+++gvs++t+sr+ +     +   +++v+ ++++alg  p
  EHU00227.1  3 TIRDVARQAGVSVATVSRVLNNSSA-VtaeTRDVVLQAVDALGYRP 47
                779*********************5.84556668888888888765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
      HTH_31  12 raGLsqeevAerlgvsestlsr 33 
                 r+G+ q+ + + ++  es++  
  EHU00227.1 195 REGWLQAMAEQGIRPQESWIAS 216
                 6677777777777777777765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-06    0.0017      10      40 ..       2      32 ..       1      32 [. 0.94

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGernPslet 40
                ++++++A+ +Gvs++t+sr  n+ ++ + et
  EHU00227.1  2 ITIRDVARQAGVSVATVSRVLNNSSAVTAET 32
                899**********************999986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.5   5.4e-06    0.0061      27      49 ..       1      23 [.       1      25 [. 0.93

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.4e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  ++++++vArq gvS  TV r+l+
    EHU00227.1  1 MITIRDVARQAGVSVATVSRVLN 23
                  579******************97 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.6e-05     0.029      22      44 ..       2      24 ..       2      25 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
                --STTTSSSS---SSSS--SS-- CS
       HTH_7 22 isiskIAkevnisRsTvYRylad 44
                i+i+++A++ ++s++Tv R+l+ 
  EHU00227.1  2 ITIRDVARQAGVSVATVSRVLNN 24
                69*******************95 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.8e-05     0.088      22      41 ..       3      22 ..       2      24 .. 0.94
   2 ?    1.0   0.2      0.32   3.6e+02       8      19 ..     103     114 ..      99     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
      HTH_38 22 slreIArrLgrspsTIsREl 41
                ++r++Ar+ g+s  T+sR l
  EHU00227.1  3 TIRDVARQAGVSVATVSRVL 22
                79****************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.32
      HTH_38   8 eeReeIerllae 19 
                  eR+ Ie l+ +
  EHU00227.1 103 KERHAIEVLIRQ 114
                 79*******876 PP

>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00051      0.58      50      77 ..       2      29 ..       1      67 [. 0.87
   2 ?    3.3   0.0     0.055        61      87     145 ..      93     150 ..      55     155 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00051
                 XXHHHHHTTSSSXHHHHHHHHHHXEEEX CS
  Sigma54_DBD 50 ltlrevaealelhesTvSRvvsnkyikt 77
                 +t+r+va++ +++ +TvSRv +n    t
   EHU00227.1  2 ITIRDVARQAGVSVATVSRVLNNSSAVT 29
                 589******************9976544 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.055
                  CXXXCSSTSSBHH.THHHHCCTHHHHHHCTS-TTSS--CCHHHHHHHCT.TS--HHHHHHH CS
  Sigma54_DBD  87 fFsssvsseegge.asaeaikalikklieaEdkkkplSDdkivellkek.gieiaRRtvaK 145
                  + s+s ++ee++  a +  i+++ ++l+ +   +k lSD++++  +++  g+ +  R +  
   EHU00227.1  93 LISNSWHQEEKERhAIEVLIRQRCNALVVH---AKTLSDAELAGFMSQVpGMVVINRSIPG 150
                  555555555655523344566677777655...899******9988775247777776655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     6e-05     0.067      19      40 ..       3      24 ..       2      32 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                ++r++Ar+ gvs  Tv+r+l+ 
  EHU00227.1  3 TIRDVARQAGVSVATVSRVLNN 24
                89****************9975 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.9e-05     0.066      11      46 ..       2      36 ..       1      42 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.9e-05
      HTH_26 11 itkseLargtgisaatlsrlvkgkpervsldtLdki 46
                it+ ++ar++g+s at+sr +++  + v+++t d++
  EHU00227.1  2 ITIRDVARQAGVSVATVSRVLNNS-SAVTAETRDVV 36
                5999*******************7.68888876655 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.14      18      39 ..       2      23 ..       2      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      HTH_24 18 isqreLAerlglSpstvnrrlk 39
                i++r++A++ g+S++tv+r l+
  EHU00227.1  2 ITIRDVARQAGVSVATVSRVLN 23
                89*****************887 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00013      0.14      51      74 ..       3      26 ..       1      40 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
  Trp_repressor 51 sqreIaeelgvSiAtItRvsrsLk 74
                   + r++a + gvS+At++Rv ++  
     EHU00227.1  3 TIRDVARQAGVSVATVSRVLNNSS 26
                   6799***************88755 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00024      0.27      18      34 ..       3      19 ..       2      20 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
                -HHHHHHHHTSSHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalY 34
                t+r++A++AGvs +++ 
  EHU00227.1  3 TIRDVARQAGVSVATVS 19
                89************986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.24      20      40 ..       3      23 ..       1      24 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                t++++Ar++g++ +tv+R L+
  EHU00227.1  3 TIRDVARQAGVSVATVSRVLN 23
                899***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2558.74
//
Query:       EHU00228.1  [L=386]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-41  140.4  14.4      5e-41  140.4  14.4    2.8  3  DUF418    Protein of unknown function (DUF418)
  ------ inclusion threshold ------
        1.2    8.6   5.1       0.21   11.1   0.4    2.1  3  Clc-like  Clc-like


Domain annotation for each model (and alignments):
>> DUF418  Protein of unknown function (DUF418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.8     0.048   4.3e+02      25      77 ..      20      71 ..       9      95 .. 0.57
   2 ?    1.9   0.5     0.021   1.9e+02      19      80 ..      63     126 ..      51     137 .. 0.78
   3 !  140.4  14.4   5.5e-45     5e-41       2     161 ..     216     373 ..     215     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.048
      DUF418 25 llvglplnlllavlaeaaeesallelllsvlrylaglllalgyvalillllak 77
                ll  + + l+ a ++ +++++   +l   ++ +l+ ++  l +++l++ll+  
  EHU00228.1 20 LLNIIGFGLPSA-AYLNPAWQGSVTLSDAWTWALSDIFAQLKFLTLFALLFGA 71
                333333333333.4444555555555555666666666666666666666644 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.021
      DUF418  19 rllligllvglplnllla..vlaeaaeesallelllsvlrylaglllalgyvalillllakekr 80 
                  l+++++ +gl l+l+    +l +  +  +ll++l s++ + + +ll +g+++li++ + +++ 
  EHU00228.1  63 TLFALLFGAGLQLQLPRGsrWLSARLSLLVLLGFLHSIFIWEGDILLDYGIIGLIVWRMLRDAP 126
                 4566668888888888887778888888899999999999999999999999999987777665 PP

  == domain 3  score: 140.4 bits;  conditional E-value: 5.5e-45
      DUF418   2 grkglledpeehkrllrrllligllvglplnllla.vlaeaaeesallelllsvlrylaglllalgyvalillllakekrrrllralaavGRmALTnYl 99 
                  r+g+l+ +    +++rr++ ++l++gl ++ + + +++ +++++++ ++ l++ r +a++l+++gy+al+  +++  +r+r+  a++ vGRmAL+nYl
  EHU00228.1 216 LRSGWLK-GTFPVSHYRRVARMLLPIGLGIATAGVaAQWFVDWDARWSAFYLQLPRDFASPLISIGYAALCFGFWPAIQRWRMSYAIQCVGRMALSNYL 313
                 799***9.999************************9*************************************************************** PP

      DUF418 100 lqslictllfygyglglfgslgraallllallifllqllfSklwlrrfrqGPlEwlwRrlty 161
                 lqsli+t+lf  y +glf+++ r +l++++ +i++++llfS lwlr+f qGP+Ew+wRrlt 
  EHU00228.1 314 LQSLIGTTLF--YRFGLFMHFMRGQLVMMVPGIWCINLLFSVLWLRYFPQGPVEWIWRRLTR 373
                 **********..8899********************************************95 PP

>> Clc-like  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   2.3e-05      0.21       5      28 ..      16      39 ..      13      51 .. 0.88
   2 ?   -4.4   0.5       1.2   1.1e+04       8      24 ..     136     153 ..     132     155 .. 0.50
   3 ?   -2.6   0.0      0.34   3.1e+03      99     115 ..     199     215 ..     182     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.3e-05
    Clc-like  5 llslvlsivallLtaaavltPsWq 28
                l +l+l i++++L +aa l P+Wq
  EHU00228.1 16 LGILLLNIIGFGLPSAAYLNPAWQ 39
                66899******************9 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 1.2
    Clc-like   8 lvlsiva.llLtaaavlt 24 
                 ++l +v+ +lL+++a+++
  EHU00228.1 136 ILLYLVGcALLLIFALIS 153
                 444444413445566655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.34
    Clc-like  99 kFygWhkavlilllisl 115
                   ygW+ a l+ll  +l
  EHU00228.1 199 AQYGWQLAGLMLLGAAL 215
                 56999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3026.67
//
Query:       EHU00229.1  [L=221]
Description: GTP cyclohydrolase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-63  212.8   0.4    2.9e-63  212.5   0.4    1.1  1  GTP_cyclohydroI  GTP cyclohydrolase I
  ------ inclusion threshold ------
       0.07   13.3   0.0       0.13   12.5   0.0    1.4  1  QueF             QueF-like protein


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   0.4   3.2e-67   2.9e-63       2     178 ..      41     218 ..      40     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 212.5 bits;  conditional E-value: 3.2e-67
                      HHHHHHHHHHTT--TTSTTTTTHHHHHHHHH.HHHTGGGGS-G...GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-TTEE CS
  GTP_cyclohydroI   2 eeavreiLealgedpereglketpkRvakay.eelfkgleedp..kekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiPkkkv 92 
                      + +++ei++ l+ d e+++l etp+R+ak+y +e+f+gl++ +  k ++++++++   demv+v+di+++S+CeHH++ + gka+vaYiPk+kv
       EHU00229.1  41 AGHMTEIMQLLNLDLEDDSLMETPHRIAKMYvDEVFSGLDYANfpKITLIENKMK--VDEMVTVRDITLTSTCEHHFVIIDGKATVAYIPKDKV 132
                      67899*********************************99998667888888888..************************************* PP

                      E-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHHH CS
  GTP_cyclohydroI  93 iGlSklaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreefleli 178
                      iGlSk++Riv+++a+r+qvQErlt+q+  al++ l++++vav i+a h+C+++rgvk+++s t+t++l G fk+ +++r+efl+ +
       EHU00229.1 133 IGLSKINRIVQFFAQRPQVQERLTQQVLLALQTLLGTNNVAVSIDAVHYCVKARGVKDATSATTTTSLGGLFKSSQNTRQEFLRAV 218
                      ***********************************************************************************986 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.13       6      57 ..     122     173 ..     120     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
        QueF   6 lvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwle 57 
                  ++ Y+p++kv+ l  + + +  f +r + +E  ++++l  l + l  + + 
  EHU00229.1 122 ATVAYIPKDKVIGLSKINRIVQFFAQRPQVQERLTQQVLLALQTLLGTNNVA 173
                 5799**********************************99988877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1743.73
//
Query:       EHU00230.1  [L=375]
Description: putative major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-86  289.5  44.9    4.7e-86  289.3  44.9    1.0  1  MFS_4          Uncharacterised MFS-type transporter YbfB
    7.5e-13   48.1  72.8      6e-12   45.2  47.0    1.8  2  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.34   11.1   6.6        0.2   11.9   0.8    3.0  2  stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_


Domain annotation for each model (and alignments):
>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.3  44.9   7.9e-90   4.7e-86       2     362 ..      14     370 ..      13     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 289.3 bits;  conditional E-value: 7.9e-90
       MFS_4   2 avalGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlv 100
                  v +GiGRF++tp++P l+++ ql+l+ a+ +aa NylGYL G+++a+ a+++ + R  l+ g++ +v+l++ +a++ + +++ +iRf+ G as++++v
  EHU00230.1  14 FVVMGIGRFAFTPQVPLLIQADQLTLTSASVVAALNYLGYLCGSFDAMRAQQRVEWR--LHLGVWGAVVLTALSACAGGPWLHGIIRFVIGWASGWAMV 110
                 688********************************************6665555555..599************************************* PP

       MFS_4 101 fgsslvlahaaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllallla 199
                 ++++++ +++++++r+ + a++faG+G+Gi +sgll+++l+ l++s   +W ++a+l+avl+ ++  +lpr+ + + + + +a  +++ +  l++l+l 
  EHU00230.1 111 LVAAWSNEQLHHHGRPGLSAAVFAGPGAGIFISGLLAVILHCLQVSVTLAWGIYAALAAVLVAAICRNLPRTGALHRAGQVPA--PLTLTPNLRRLVLS 207
                 **********************************************************************7666665556666..7799999******* PP

       MFS_4 200 YglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflaita 298
                 Y laGfGYi++atFl+++a++++ g++l++l+W+++G aa++g+ +     +  +++  la++l+ +a+gvl++ l+p+  gl+++++l+G+ fl +++
  EHU00230.1 208 YSLAGFGYILPATFLSQMAAARFPGSALAQLVWPVFGGAAMLGIVIGIVTRRMGQAHVRLAITLWAQALGVLAAALLPGFGGLLLGALLVGGGFLSVVQ 306
                 *******************************************9888877777778889**************************************** PP

       MFS_4 299 lvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaaliv 362
                 l l  arelap++tr ++gl+T+ ++igQ++Gpll sl++ ++  l++al va+a+lv a+l+v
  EHU00230.1 307 LSLLCARELAPQHTRYMAGLLTTGYAIGQLAGPLLSSLSTLFLHHLEPALWVAGASLVWAGLLV 370
                 ************************************************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2  47.0     1e-15     6e-12       3     353 .]      12     339 ..      10     339 .. 0.84
   2 !   16.7  17.8   4.6e-07    0.0028      44     171 ..     245     371 ..     245     374 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1e-15
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgag 100
                  ++++++++r++++p +pl+++ d +++ ++++ +++l +lg++ +s+ ++r  +r+  r  + ++g++++ +   +++   + wl+ + r++ G+++g
  EHU00230.1  12 TLFVVMGIGRFAFTPQVPLLIQAD-QLTLTSASVVAALNYLGYLCGSFDAMRAQQRVEWRLhLGVWGAVVLTAL-SACA--GGPWLHGIIRFVIGWASG 106
                 5788999***********966666.789****************************975555555555555555.3444..5678999*********** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +++ ++aa+  +  ++  r+   + + ag ++G+ +  ll+ +l   +++ ++++ i a++++++  +  + + ++ p+ +    + +    +papl+ 
  EHU00230.1 107 WAMVLVAAWSNEQLHHHGRPGLSAAVFAGPGAGIFISGLLAVILHcLQVSVTLAWGIYAALAAVL--V--AAICRNLPRTGALHRAGQ----VPAPLTL 197
                 ********************************************99*****99999999999999..4..556666666666666666....8888888 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallav 296
                     l++      l+++  l++fg+ +  t+l    +    ++g   ++ l+  ++ ++a+l++++g + +r+g  + rl ++l + +l++l+ all+ 
  EHU00230.1 198 -TPNLRR------LVLSYSLAGFGYILPATFLSQ--MAAARFPG-SALAQLVWPVFGGAAMLGIVIGIVTRRMGQaHVRLAITLWAQALGVLAAALLPG 286
                 .444444......677777777799999999999..67777774.4444445666666667789********9988*********************** PP

       MFS_1 297 tssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 +     lll+ +l+G g+  v+ ++l +a +lap +++  ++gl +t +++g + gp
  EHU00230.1 287 F---GGLLLGALLVGGGFLSVVQLSLLCARELAP-QHTRYMAGLLTTGYAIGQLAGP 339
                 *...7777799999*******************8.89999*************9998 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.6e-07
       MFS_1  44 gaavaslplGrlsdrfGrrr.vlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpl 139
                 gaa + +++G ++ r+G     l ++l + alg+l+++ + +++  lll + ++ G +  +++ +++  +++++p+ +   + gll++g+++G + gpl
  EHU00230.1 245 GAAMLGIVIGIVTRRMGQAHvRLAITLWAQALGVLAAAlL-PGFGgLLLGALLVGGGF-LSVVQLSLLCARELAPQ-HTRYMAGLLTTGYAIGQLAGPL 340
                 678999***********99988999999999994444434.9*995555555555555.58888888999999998.6667779*************** PP

       MFS_1 140 lgglla.sslgWravfyilaivsllafvlflll 171
                 l++l +  +   + + +++++ ++ a++l  ++
  EHU00230.1 341 LSSLSTlFLHHLEPALWVAGASLVWAGLL--VW 371
                 ***88844455888888888888877776..44 PP

>> stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   3.4e-05       0.2      71      96 ..     231     257 ..     218     266 .. 0.75
   2 ?    0.6   0.3       0.1   6.1e+02      94     104 ..     364     374 ..     345     375 .] 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
  stn_TNFRSF12A  71 p.pasfrllwpilGGalslalvlglls 96 
                    p  a  +l+wp++GGa  l +v+g+++
     EHU00230.1 231 PgSALAQLVWPVFGGAAMLGIVIGIVT 257
                    31356789****************986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.1
  stn_TNFRSF12A  94 llsGflvwrrc 104
                    + +G+lvwrr 
     EHU00230.1 364 VWAGLLVWRRV 374
                    458******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2802.75
//
Query:       EHU00231.1  [L=303]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  126.0   0.2    1.7e-36  125.6   0.2    1.2  1  LysR_substrate  LysR substrate binding domain
    1.4e-16   60.2   0.4    2.7e-16   59.2   0.4    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00021   21.0   0.1    0.00066   19.4   0.1    1.8  2  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.089   12.6   0.0       0.14   11.9   0.0    1.3  1  DUF2157         Predicted membrane protein (DUF2157)


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.2   3.7e-40   1.7e-36       3     206 ..      86     284 ..      84     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 3.7e-40
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE. CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv. 96 
                      ++g + +g  +++a+++lp lla++++r+P v l+l +g+s e++d+++eg+l +a++ gp ++++l     ++e++vl+   dh      pv 
      EHU00231.1  86 KPGGNFALGSMESTAATRLPGLLAAYHQRFPAVALSLITGTSGEIIDRVREGTLAAALVDGPVQHDDLNGCIAFSEEMVLITDLDH-----IPVt 175
                     688999********************************************************************************.....7888 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkg 190
                     s++d ++ +l  +++++++r  le++ r+++ +p+ ++e+ s++a+la+va G G+a++p+s++++ +++ r+++  lp+  ++  +++l++r++
      EHU00231.1 176 SARDTQEDTLFAFRNSCSYRVKLEAWYRDSQAAPNSVMEIQSYHAMLACVAGGAGVAMIPASVLKQMPERARVQVHSLPA-KYRdTATWLMWRRD 269
                     ********************************************************************************.9999********** PP

                     CCCHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflre 206
                        +p v+a+  ++ e
      EHU00231.1 270 A-FTPNVEALKYLIIE 284
                     9.89999988776666 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.4   6.1e-20   2.7e-16       3      59 ..       5      61 ..       3      62 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 6.1e-20
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                qlr f  vae+gs++rAAe+L+  ++ ++ ++++LEeelg++Lf+R ++++rL + G
  EHU00231.1  5 QLRMFCSVAESGSLARAAEQLHRVPSNLTTRLRQLEEELGADLFIREKQRIRLSPMG 61
                9*********************************************999****9988 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.5e-07   0.00066      10      45 ..      13      48 ..       6      58 .. 0.86
   2 ?   -2.6   0.0       1.1   4.8e+03      22      33 ..     185     196 ..     183     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-07
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgldld 45
                +++g+++++A++Lh  +  l+ RLr++ee lg dl 
  EHU00231.1 13 AESGSLARAAEQLHRVPSNLTTRLRQLEEELGADLF 48
                688*******************************85 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                 HTS-HHHHHHHH CS
      HTH_30  22 LhvHrnTlryRL 33 
                 L+  rn+ +yR+
  EHU00231.1 185 LFAFRNSCSYRV 196
                 666699999997 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.14      16      87 ..     197     268 ..     193     289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
     DUF2157  16 allaryeaeeresarrrsfleallvlGalllglGlilfvAanWqglsrlvkfllllvllllslllgavlwrd 87 
                 +l a y+ +++++++  + +   ++l++++ g+G+ ++ A++ +++++ +++ +  +++     +++++wr+
  EHU00231.1 197 KLEAWYRDSQAAPNSVMEIQSYHAMLACVAGGAGVAMIPASVLKQMPERARVQVHSLPAKYRDTATWLMWRR 268
                 5777888887777755555888999******************************99999999999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2268.36
//
Query:       EHU00232.1  [L=374]
Description: alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-26   90.2   0.5    7.4e-26   90.2   0.5    1.8  2  ADH_N           Alcohol dehydrogenase GroES-like domain
    6.9e-24   84.3   0.1    1.2e-23   83.5   0.1    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase
    0.00016   22.7   0.0    0.00033   21.7   0.0    1.6  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
     0.0002   20.9   0.2    0.00096   18.7   0.0    2.1  2  Glu_dehyd_C     Glucose dehydrogenase C-terminus
  ------ inclusion threshold ------
      0.042   13.4   0.1      0.066   12.8   0.1    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.15   11.8   0.0        0.3   10.8   0.0    1.4  1  Met_10          Met-10+ like-protein


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.5   2.5e-29   7.4e-26       2     108 ..      31     157 ..      30     158 .. 0.86
   2 ?   -2.9   0.1       2.1   6.3e+03      50      61 ..     184     195 ..     172     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.5e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-................... CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC................... 81 
                 gevl+++ a+g+C++D  +l+g +++e  +p ilGHE  G+ve+vg++v++++vGd+V+   + +cg+C+ C +g++nlC                   
  EHU00232.1  31 GEVLVRIVATGVCHTDAYTLSG-SDPEGVFPAILGHEGGGIVEAVGEGVTSVEVGDHVIPLYTPECGKCKFCLSGKTNLCqairttqgkglmpdgttrf 128
                 89********************.8************************************99999***************9998888888888877777 PP

                 ..TTBEETTTSS-SSSBSEEEECGGGEEE CS
       ADH_N  82 ..eeakllgvsldGgfaeyvvvpekklvk 108
                   + + ++ +    +f+ey+vvpe +l+k
  EHU00232.1 129 fkDGKPIFHYMGTSTFSEYTVVPEISLAK 157
                 65223333333344899999999887776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
                 -CS--TT-EEEE CS
       ADH_N  50 vkklkvGdrVvv 61 
                 + k+k Gd V++
  EHU00232.1 184 TAKVKEGDTVAI 195
                 456899999987 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.1   4.1e-27   1.2e-23       1     119 [.     200     322 ..     200     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 4.1e-27
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.H.HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.d.lverikeltggegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkgee 95 
                 g+Gl a+  Ak+++a ++i++d++ +k++la+klGa+ +in+k+  + +++ i elt ++gvd++fec+G+  ++++al+++++g G  v++G+ + ++
  EHU00232.1 200 GIGLSAIIGAKMAKAgRIIGIDINTSKFDLARKLGATDLINPKDYdKpIQDVIVELT-DGGVDFSFECIGNVNVMRSALECCHKGwGESVIIGVAGAGQ 297
                 8*****************************************777556889999***.55**********************************66666 PP

                 EEEHHHHH.HTT-EEEEE-SSCHHH CS
  ADH_zinc_N  96 efdlrnll.lkeksilGsllgslre 119
                 e+++r++   + +  +Gs +g+++ 
  EHU00232.1 298 EISTRPFQlVTGRVWRGSAFGGVKG 322
                 699999554999999*****99554 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.1e-07   0.00033       1     127 [.     233     365 ..     233     370 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
                   TT-SEEE...ETT..STTHH.HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHH CS
  ADH_zinc_N_2   1 lGAdevi...dyr..tedfe.aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadil 90 
                   lGA+  i   dy+   +d+  + t  +gvD  ++++g+ + ++ +l+++ +g G  v ig   + ++++ ++++  +++v     f   ++ + + l
    EHU00232.1 233 LGATDLInpkDYDkpIQDVIvELT-DGGVDFSFECIGNVNVMRSALECChKGWGESVIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKG-RSQ-L 326
                   788889988766642345557888.567*********99999*******8888**988885456777777777676666666666654445.666.* PP

                   HHHHHHHHHHH..----EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  91 eelaalieeGk..lrpvvdrvfpleeaaeAhrylesgra 127
                     +++ + +Gk  l+  +++++pl+e+++A++++++g+ 
    EHU00232.1 327 PGIVQDYLDGKfaLNDFITHTMPLAEINDAFDLMHEGKS 365
                   ***********778889******************9986 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.1   6.2e+03      91     127 ..      23      59 ..      20      73 .. 0.71
   2 !   18.7   0.0   3.2e-07   0.00096      31     212 .]     190     372 ..     178     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
  Glu_dehyd_C  91 vdeipeaseemdlvvEaTGsakhafeaiealapnGva 127
                  vd +p ++ e+ + + aTG  +    +++  +p+Gv 
   EHU00232.1  23 VDLMPPQKGEVLVRIVATGVCHTDAYTLSGSDPEGVF 59 
                  5556666666666677888888888888888888885 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.2e-07
  Glu_dehyd_C  31 pesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYv...dsretpvdeipe..aseemdlvvEaTGsakhafeaiealap 123
                   +++ + G G +GL a  ++ a+  +  r+  +g  d +  + dl ++lGat     +   +p++++    ++  +d+ +E+ G+ +++  a+e    
   EHU00232.1 190 GDTVAIFGLGGIGLSA--IIGAKMAKAGRI--IGI-DINTSKFDLARKLGATDLinpKDYDKPIQDVIVelTDGGVDFSFECIGNVNVMRSALECCHK 282
                  57899*********99..555544455545..563.67789***********762222345678776431156789*****************98865 PP

  Glu_dehyd_C 124 .nGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpesl.ldelvtkvvdldeleeAfe..dddetiKtvvel 212
                    G  +++Gv     e++ +  +l +  v +  a +G v  + +      d L   + ++ l++++t+ ++l+e+++Af+  ++ ++i++vv++
   EHU00232.1 283 gWGESVIIGVAGAGqEISTRPFQLVTGRVWRGSA-FGGVKGRSQLPGIVQDYL---DGKFaLNDFITHTMPLAEINDAFDlmHEGKSIRSVVHF 372
                  2699*******76549999999999999998887.688877666555555544...445559*****************943455799999987 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.2e-05     0.066       2      40 ..     192     231 ..     191     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
                     EEEEE--STTHH..HHHHHHHHCTSEEEEE-S-HHHHHHHC CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGl..vtaavlaeighevigvDideekvdkln 40 
                     +++++GlG +Gl  + +a +a++g  +ig+Di+++k d  +
      EHU00232.1 192 TVAIFGLGGIGLsaIIGAKMAKAG-RIIGIDINTSKFDLAR 231
                     699********9324566777777.69********988655 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.9e-05       0.3      97     138 ..     186     228 ..     180     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.9e-05
                 T--TT-EEEET.T-TTTCCHHHCCHHTTSSEEEEEES-HHHHH CS
      Met_10  97 lveegevVvdv.fAGiGpfaipiakyskakrvlaidlnPesvk 138
                 +v+eg++V    + GiG  ai  ak++ka r+++id+n + + 
  EHU00232.1 186 KVKEGDTVAIFgLGGIGLSAIIGAKMAKAGRIIGIDINTSKFD 228
                 58888888654389************************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2726.38
//
Query:       EHU00233.1  [L=281]
Description: putative esterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-64  215.7   0.0    9.3e-64  215.5   0.0    1.0  1  Esterase         Putative esterase
    1.5e-05   24.5   0.0    2.2e-05   24.0   0.0    1.2  1  Peptidase_S9     Prolyl oligopeptidase family
    3.4e-05   23.2   0.4     0.0012   18.1   0.2    2.0  2  Hydrolase_4      Serine aminopeptidase, S33
    0.00015   21.4   0.0      0.022   14.2   0.0    2.1  2  Esterase_phd     Esterase PHB depolymerase
    0.00024   20.1   0.0    0.00036   19.5   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
    0.00089   19.9   0.9    0.00089   19.9   0.9    2.0  2  Abhydrolase_6    Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.021   13.8   0.0    1.4  2  Chlorophyllase   Chlorophyllase
      0.026   14.3   0.0       0.05   13.4   0.0    1.4  1  NHR2             NHR2 domain like
      0.046   13.6   0.0      0.063   13.1   0.0    1.2  1  Lipase_3         Lipase (class 3)
       0.12   11.4   0.0       0.18   10.8   0.0    1.2  1  DUF1057          Alpha/beta hydrolase of unknown function (DU
       0.34   11.0   2.2        4.1    7.5   0.8    2.3  2  Thioesterase     Thioesterase domain


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5   0.0   5.7e-67   9.3e-64       1     250 [.      25     272 ..      25     273 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.5 bits;  conditional E-value: 5.7e-67
                 ETTTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSB..B.TTEEETTCCCCCCHC.. CS
    Esterase   1 SealgreikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlg..arfyenategpgaeaye.. 95 
                 S+ l++++++++yLP+  +   ++pvv++l Glt++d+nf++k++ +++a+e ++  ++++++prg+++++++ +dlg  a+fy+nat++p+a++y+  
  EHU00233.1  25 SQVLNCPMTFSIYLPRP-RGDSPPPVVWFLAGLTCNDENFTTKAGAQRVAAELGLVLIMPDTSPRGEAVANDEGYDLGqgAGFYLNATQQPWASHYRmf 122
                 789**************.********************************************************************************* PP

                 HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC........TTCCHHHCC-CCCCHCHHCHTTSEEEE CS
    Esterase  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq........eekeawqendpvllakelsaslkalri 186
                 ++l++eL+ l+++nf+++++ ++++G+SmGG+gAL+lal+  +rF+s+s+f+pivnp +++Wgq        e+++aw ++d++ l+    + + +l  
  EHU00233.1 123 DYLSEELPALIADNFKVSER-QSIMGHSMGGHGALMLALRLANRFASASAFAPIVNPADVPWGQkaftaylgEDRQAWRAYDSCQLM---REVQHRLPL 217
                 ********************.******************************************************************...678999*** PP

                 EEEECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHHH CS
    Esterase 187 yldvGtseddlgeqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaalad 250
                 ++d+G+s+++l++ql++e le +a+++ ++  l+ r ++g+dh+y        ++a++++++++
  EHU00233.1 218 LIDQGDSDQFLADQLQPERLEAVAQEMDFP--LTLRIQPGYDHSYF-------FIASFVEDHLR 272
                 ******************************..*************9.......99999999987 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-08   2.2e-05      54     188 ..     131     260 ..     118     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.3e-08
                   HHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEE CS
  Peptidase_S9  54 alakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlih 150
                   al++ ++  ser  i+G+S GG  +++++ +  ++F+ a a +p+v+       ++++t+   e  ++      y+ ++ ++ ++      plL+ +
    EHU00233.1 131 ALIADNFKVSERQSIMGHSMGGHGALMLALRLANRFASASAFAPIVNPADVPWGQKAFTAYLGEDRQA---WRAYDSCQLMREVQ---HRLPLLIDQ 221
                   6788889999*****************************************99988899955443433...33344555555554...4899***** PP

                   ETT-SSS-T.HHHHHHHHHHH--S-SEEEEEETTS-SST CS
  Peptidase_S9 151 GlaDdrvpp.aealklvaaLqkkgknvlllifpdegHgv 188
                   G+ D+      ++++l a  q+ + ++ l+i p+ +H++
    EHU00233.1 222 GDSDQFLADqLQPERLEAVAQEMDFPLTLRIQPGYDHSY 260
                   ****98765258888888888999999999999999954 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   7.5e-07    0.0012      77     132 ..     142     194 ..     112     210 .. 0.79
   2 ?    3.8   0.0     0.018        29     187     234 ..     210     260 ..     196     262 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.5e-07
  Hydrolase_4  77 plfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllgk 132
                  +  ++GhSmGG  al ++lr ++++a +  +aP ++++    +p+ +k++   lg+
   EHU00233.1 142 RQSIMGHSMGGHGALMLALRLANRFASASAFAPIVNPAD---VPWGQKAFTAYLGE 194
                  4569*******************************9984...78888887777665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.018
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpeasrelyerlgsk...dktlklypglyHel 234
                    + +lPll+ +G++D+    + + e +e+++++     tl++ pg  H+ 
   EHU00233.1 210 EVQHRLPLLIDQGDSDQFLADQLQPERLEAVAQEmdfPLTLRIQPGYDHSY 260
                  344569*************99999777766666543356777777777765 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-05     0.022       2      62 ..      33      93 ..      32     114 .. 0.87
   2 !    5.2   0.0    0.0077        13      89     184 ..     134     229 ..     123     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
  Esterase_phd  2 ayrlylppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqk 62
                  ++ +ylp  +  +  p+v +l G t + e+f++ +  + +a +lG+v++ p+ s r +a  
    EHU00233.1 33 TFSIYLPRPRGDSPPPVVWFLAGLTCNDENFTTKAGAQRVAAELGLVLIMPDTSPRGEAVA 93
                  5789999766666789999*************************************99865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0077
  Esterase_phd  89 vdehrvdaarvyvaGlsaGaaladllalhypdvfaavalhsGlal.GeaadvisaldvmrrGlrqapaaavdalveagaypglpalvvqGdadtvva 184
                   +d+ +v + r  + G s G+  a +lal   ++fa+ +  + +        +  a+ +     rqa  a    +    +   lp l+ qGd+d+ +a
    EHU00233.1 134 ADNFKV-SERQSIMGHSMGGHGALMLALRLANRFASASAFAPIVNpADVPWGQKAFTAYLGEDRQAWRAYDSCQLMREVQHRLPLLIDQGDSDQFLA 229
                   445554.45778999*******************988776544331344456788888888888998888888888889999*********998776 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.2e-07   0.00036       2     121 ..      30     172 ..      29     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.2e-07
  Chlorophyllase2   2 pPkpllvvaPteageY..pvllflhGylllnslYsql..Lkhia.shgfivvap..................qlykvaeada.keiksaakvln 71 
                       P++  ++ P+  g+   pv+ fl G++++ + +++    +++a   g +++ p                  q   +  + + +   s  ++ +
       EHU00233.1  30 CPMTFSIYLPRPRGDSppPVVWFLAGLTCNDENFTTKagAQRVAaELGLVLIMPdtsprgeavandegydlgQGAGFYLNATqQPWASHYRMFD 123
                      57888888888888753379*******9998888764125666516899999999999***99999999888655544444548899999**** PP

  Chlorophyllase2  72 WlakgLesvlpeevepdlsklalsgHSrGgktafalalgkaktslkfsal 121
                      +l+++L   ++++ +   ++ ++ gHS Gg+ a+ lal  a+   + sa 
       EHU00233.1 124 YLSEELPALIADNFKV-SERQSIMGHSMGGHGALMLALRLANRFASASAF 172
                      *******999999986.57889******************9944444443 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.33   5.4e+02     143     191 ..      16      73 ..       6      87 .. 0.60
   2 !   19.9   0.9   5.5e-07   0.00089      45     139 ..     122     223 ..      88     279 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.33
                    CHCHCCCGHHHHCCHHCHTT...CCHHTT-TTGCEEE..C...TT-C..HHHHCHHCCC CS
  Abhydrolase_6 143 awrarlarlaallaglgllp...aaawadlpvpllvl..g...geDp..lvprllerll 191
                     w++r++++++ l+++ +++   +++  d p+p+ v+  +   ++D+  + ++ ++r +
     EHU00233.1  16 GWQQRWRHPSQVLNCPMTFSiylPRPRGDSPPPV-VWflAgltCNDEnfTTKAGAQRVA 73 
                    5999999999999977744333366777777777.322323444444443333344433 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 5.5e-07
                    --HHHCHHHHHHHCCTT..TTSEEEEEETCHHH....HHHHHHHCC....EE.EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH..... CS
  Abhydrolase_6  45 ldledladlaalldelaagggpvvlvGHSlGGa....lalaaapla..lvvg.vlldppptalpagllaaalelllallallrllawlsre..... 128
                    +d+   ++l al+++  ++  +  ++GHS+GG+    lal+   la  + ++  + +p   ++ ++++++  + + a+l+  r  aw++++     
     EHU00233.1 122 FDYLS-EELPALIADNFKVSERQSIMGHSMGGHgalmLALR---LAnrF-ASaSAFAP---IVNPADVPWGQKAFTAYLGEDR-QAWRAYDscqlm 208
                    33322.4443333333337777899******9854455555...55532.33466666...4444443333333333333333.477764333333 PP

                    .....S-HSCCCCHHH CS
  Abhydrolase_6 129 .....plprlfladed 139
                          lp l++++ d
     EHU00233.1 209 revqhRLP-LLIDQGD 223
                    33332222.3333333 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.2   3.6e+03      35      63 ..      34      64 ..      27      84 .. 0.63
   2 ?   13.8   0.0   1.3e-05     0.021     100     144 ..     122     165 ..     109     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.2
  Chlorophyllase 35 liivtPaeaGty..pvvlflhGtllsnkfys 63
                    + i  P  +G    pvv fl G + ++++++
      EHU00233.1 34 FSIYLPRPRGDSppPVVWFLAGLTCNDENFT 64
                    5555555555542268999999887777665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.3e-05
  Chlorophyllase 100 ieWlseglkavlptsveanlsklalvGhsrGGktafalalgysse 144
                      ++lse+l a + ++ +   ++ +++Ghs GG+ a+ lal+ ++ 
      EHU00233.1 122 FDYLSEELPALIADNFKV-SERQSIMGHSMGGHGALMLALRLANR 165
                     456666666655555554.46789****************76632 PP

>> NHR2  NHR2 domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.1e-05      0.05       7      29 ..      11      32 ..       6      35 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
        NHR2  7 trltdreiadewkHldhlLnCii 29
                +r+++ ++ ++w+H+ ++LnC +
  EHU00233.1 11 HRIFG-GWQQRWRHPSQVLNCPM 32
                55554.79*************87 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05     0.063      52      92 ..     126     168 ..      96     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHTT..-EEEEEEEETHHHHHHHHHHHHHHHTT-S CS
    Lipase_3  52 lkelkrllekyp..eysivvtGHSLGgalAlLaaldlvengen 92 
                  +el  l++ +   + +  + GHS+Gg  Al++al l+++  +
  EHU00233.1 126 SEELPALIADNFkvSERQSIMGHSMGGHGALMLALRLANRFAS 168
                 555555544444234566799****************998755 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.18      98     125 ..     135     162 ..     126     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     DUF1057  98 eelelkgklillghsRGcenaLqlavtl 125
                 ++ +++++  ++ghs G+  aL+la  l
  EHU00233.1 135 DNFKVSERQSIMGHSMGGHGALMLALRL 162
                 778999******************9876 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.8    0.0025       4.1      70      90 ..     145     165 ..     110     176 .. 0.83
   2 ?    2.2   0.0     0.098   1.6e+02     146     213 ..     187     259 ..     182     276 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0025
                   EEEETHHHHHHHHHHHHHHHC CS
  Thioesterase  70 lfGhSlGgllAfevArqLesq 90 
                   ++GhS+Gg  A  +A +L ++
    EHU00233.1 145 IMGHSMGGHGALMLALRLANR 165
                   79***************9988 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.098
                   HHHHHHHHHHHHHTCCS......-TTSCSEHHCEEEEEE.GSS-CTCCCCCCCHCHCHCTCESCEEEEEESS.HCC CS
  Thioesterase 146 ellpalradyraleqys......lrpeaaqklratlfng.sddklkdldtlelaerweqktsgevsvhvleg.dhf 213
                    ++ +l +d +a+  y        ++     l++ + +g sd++l+d   +e+ e  +q+++++ ++++++g dh 
    EHU00233.1 187 AFTAYLGEDRQAWRAYDscqlmrEVQH---RLPLLIDQGdSDQFLADQLQPERLEAVAQEMDFPLTLRIQPGyDHS 259
                   688899999999999996654333333...4556655551566777777788888899999999999999995555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2077.89
//
Query:       EHU00234.1  [L=262]
Description: ATP-binding component of an ABC superfamily iron chelate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-28   98.7   0.0    4.9e-28   98.3   0.0    1.2  1  ABC_tran     ABC transporter
    8.7e-15   55.3   0.6    1.6e-06   28.2   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.2e-09   37.1   0.1      3e-07   30.1   0.1    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    3.3e-05   23.6   0.0    5.8e-05   22.7   0.0    1.5  1  AAA_25       AAA domain
    3.3e-05   24.5   0.0    4.6e-05   24.0   0.0    1.1  1  AAA_23       AAA domain
    7.3e-05   22.4   0.0    0.00014   21.6   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00025   21.0   0.0    0.00042   20.3   0.0    1.3  1  Rad17        Rad17 P-loop domain
    0.00028   19.7   0.0       0.47    9.0   0.0    2.0  2  AAA_13       AAA domain
    0.00033   21.1   0.1    0.00056   20.3   0.1    1.5  1  AAA_16       AAA ATPase domain
    0.00093   19.0   0.0     0.0013   18.5   0.0    1.2  1  AAA_15       AAA ATPase domain
    0.00095   19.1   0.0     0.0017   18.3   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0032   16.3   0.0      0.058   12.2   0.0    2.0  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0034   17.6   0.0     0.0066   16.7   0.0    1.7  1  AAA_22       AAA domain
     0.0069   16.6   0.0     0.0097   16.2   0.0    1.4  1  AAA_28       AAA domain
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.025   15.0   0.0    1.7  1  AAA          ATPase family associated with various cellular a
      0.016   14.9   0.1      0.054   13.2   0.0    1.9  2  IstB_IS21    IstB-like ATP binding protein
      0.017   15.3   0.0      0.039   14.1   0.0    1.8  1  AAA_33       AAA domain
       0.02   14.8   0.0      0.031   14.2   0.0    1.5  1  NACHT        NACHT domain
      0.029   14.4   0.1       0.07   13.1   0.1    1.7  1  AAA_5        AAA domain (dynein-related subfamily)
      0.032   13.0   0.0      0.052   12.3   0.0    1.2  1  Adeno_IVa2   Adenovirus IVa2 protein
      0.032   13.9   0.0      0.052   13.3   0.0    1.5  1  AAA_30       AAA domain
      0.033   13.6   0.0      0.043   13.2   0.0    1.1  1  HSM3_N       DNA mismatch repair protein HSM3, N terminal dom
      0.035   14.0   0.0      0.057   13.3   0.0    1.2  1  ATPase_2     ATPase domain predominantly from Archaea
       0.04   13.5   0.0      0.066   12.8   0.0    1.3  1  AAA_27       AAA domain
      0.058   13.4   0.0       0.11   12.6   0.0    1.4  1  AAA_14       AAA domain
       0.11   13.0   0.0       0.22   12.1   0.0    1.5  1  AAA_18       AAA domain
        0.2   11.7   0.2       0.33   11.1   0.2    1.7  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   7.4e-31   4.9e-28       8     136 ..      28     165 ..      20     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 7.4e-31
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeiekalskl 92 
                 l +ge+++++G+nG+GKStLl++lagl k  +Ge++l+g+dl +q+  +  +++ +lpq      +l v e+              +s++++ ++l++l
  EHU00234.1  28 LPRGEITVLLGPNGCGKSTLLRALAGLNK-GQGELWLNGEDLMTQPFARRARQVVYLPQSLPAGVHLHVLESiivaqrassglhspASEADVMRLLDQL 125
                 689************************88.69****************************888888888888899999*******999999******** PP

                 TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 g+ +l+ + +     +LSgGqkq v la++l+++p llllDEp 
  EHU00234.1 126 GIAHLAMRYL----DQLSGGQKQLVGLAQSLIRRPALLLLDEPL 165
                 **********....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.4e-09   1.6e-06       1      23 [.      33      55 ..      33      78 .. 0.84
   2 !   25.8   0.2   1.3e-08   8.4e-06     234     287 ..     135     185 ..     118     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.4e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                ++vl GpNg+GKS+LL+al +l 
  EHU00234.1 33 ITVLLGPNGCGKSTLLRALAGLN 55
                79*****************9993 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.3e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 +++lS G+k+l +l+ +l+r++   +lll+DEp + L+   + ++++l++++++
  EHU00234.1 135 LDQLSGGQKQLVGLAQSLIRRP---ALLLLDEPLSALDLNYQFHVMDLVRRETA 185
                 6899******************...************************99887 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   4.5e-10     3e-07      25     188 ..      32     185 ..      21     211 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.5e-10
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtkke 122
                 ++t+++GpNG+GKs ll A+    G ++ +     + +dl+++    +++ +a+  +++ ++  + ++ +  e  i  +  ++g        + +++++
  EHU00234.1  32 EITVLLGPNGCGKSTLLRAL---AGLNKGQGELWLNGEDLMTQ----PFARRARQVVYLPQSLPAgVHLHVLESIIVAQRASSGL------HSPASEAD 117
                 689*****************...56656555556778999998....66666665554433333213334444444444444444......57899999 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksk 188
                 v++ll + gi         +LSgG+k+Lv la       +++ +l llDe  +aLD ++   v +l+++++ 
  EHU00234.1 118 VMRLLDQLGIAHLamryldQLSGGQKQLVGLAQS----LIRRPALLLLDEPLSALDLNYQFHVMDLVRRETA 185
                 9999999999765555555**********98754....578889***********************97764 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   8.8e-08   5.8e-05      29      78 ..      27      84 ..      12     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 8.8e-08
      AAA_25 29 llpagelallaGapgtGKttlaldlalava.tGkpwlg.......pvapeqgkVlyvs 78
                 lp+ge+++l G+ g+GK+tl+  la     +G+ wl        p+a + + V+y+ 
  EHU00234.1 27 PLPRGEITVLLGPNGCGKSTLLRALAGLNKgQGELWLNgedlmtqPFARRARQVVYLP 84
                47********************999977778999999999999999999999999986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   6.9e-08   4.6e-05      12      40 ..      22      52 ..       5      55 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 6.9e-08
      AAA_23 12 dqeidF..skgltlItGpNGaGKTTildAik 40
                + +++      +t++ GpNG+GK+T+l+A+ 
  EHU00234.1 22 NLHVEPlpRGEITVLLGPNGCGKSTLLRALA 52
                44444466668******************95 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.1e-07   0.00014      13      44 ..      21      53 ..      18      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.1e-07
      AAA_29 13 dg.htieidlkg.atlltGpsGsGKSTllDAiqa 44
                d+ h+ ++  +g +t+l Gp+G GKSTll A++ 
  EHU00234.1 21 DNlHVEPLP-RGeITVLLGPNGCGKSTLLRALAG 53
                664555555.566****************99875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.3e-07   0.00042      35      87 ..      23      73 ..      16      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.3e-07
       Rad17 35 lkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn 87
                l+ + L++   +i ++ GP GCgkst ++ L+     + + wln+  l   ++
  EHU00234.1 23 LHVEPLPRG--EITVLLGPNGCGKSTLLRALAGLNKGQGELWLNGEDLMTQPF 73
                555556655..688889***************************999887776 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00085      0.57      18      43 ..      33      58 ..      23      82 .. 0.84
   2 !    9.0   0.0    0.0007      0.47     527     556 ..     156     185 ..     144     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00085
      AAA_13 18 iNliYGwNGaGKTtLSrllrslelge 43
                i ++ G NG GK+tL r+l+ l++g+
  EHU00234.1 33 ITVLLGPNGCGKSTLLRALAGLNKGQ 58
                66788*****************8876 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0007
      AAA_13 527 dkivviDDPvSSLDsnslfivfsliksrll 556
                      +D P S LD n +f+v+ l++ +++
  EHU00234.1 156 PALLLLDEPLSALDLNYQFHVMDLVRRETA 185
                 566789********************9983 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   8.5e-07   0.00056      22      58 ..      29      65 ..      17     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 8.5e-07
      AAA_16 22 grpelvllsGesGvGKsslvrellralekdggiflrg 58
                +r+e+++l G+ G+GKs+l+r+l+   +++g ++l+g
  EHU00234.1 29 PRGEITVLLGPNGCGKSTLLRALAGLNKGQGELWLNG 65
                4559*******************96555443333333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     2e-06    0.0013      23      47 ..      32      55 ..      20      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-06
      AAA_15 23 eeltvliGkNnsGKSsilealdlFl 47
                e +tvl G+N++GKS++l+al  + 
  EHU00234.1 32 E-ITVLLGPNGCGKSTLLRALAGLN 55
                3.9*****************97665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.5e-06    0.0017      93     121 ..      25      53 ..       9      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.5e-06
                  HHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  93 lkellkdktsvlvGqSGvGKStLinallp 121
                  +++l +++++vl+G+ G GKStL+ al++
   EHU00234.1  25 VEPLPRGEITVLLGPNGCGKSTLLRALAG 53 
                  45566789******************997 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   8.7e-05     0.058     242     265 ..      28      52 ..      15      55 .. 0.93
   2 ?    2.0   0.0      0.11        72     323     366 ..     138     180 ..     126     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 +p+G +t++ G++  GKsTLL+Al+
  EHU00234.1  28 LPRGeITVLLGPNGCGKSTLLRALA 52 
                 69999******************96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelv 366
                  SG   q + ++++l ++  llL+DE  sA  l ++ + m+ lv
  EHU00234.1 138 LSGGQKQLVGLAQSLIRRPALLLLDEPLSALDLNYQFHVMD-LV 180
                 5888888899999999999***********99999877776.44 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.9e-06    0.0066       6      50 ..      32      87 ..      29     202 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.9e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpss 50
                 i+v+ G+ G+GK+tllr l+  ++ +    e              +r+++v + ++s+
  EHU00234.1 32 EITVLLGPNGCGKSTLLRALAGLNKGQG---ElwlngedlmtqpfaRRARQVVYLPQSL 87
                689*****************99885433...1345777777777765555555544444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0097       3      21 ..      35      55 ..      33     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
      AAA_28  3 vitGgestGKTtlleaLa..a 21
                v++G+ ++GK+tll+aLa  +
  EHU00234.1 35 VLLGPNGCGKSTLLRALAglN 55
                89***************9542 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.7e-05     0.025       2      35 ..      35      69 ..      34     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-05
                EEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCS CS
         AAA  2 llyGppGtGKTllakavakelg.vefleisgsell 35
                +l Gp G+GK++l +a+a   + +  l ++g +l+
  EHU00234.1 35 VLLGPNGCGKSTLLRALAGLNKgQGELWLNGEDLM 69
                689**************987542333555555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.2e-05     0.054      28      89 ..      12      71 ..       8     125 .. 0.77
   2 ?   -0.9   0.1       1.8   1.2e+03     100     135 ..     146     181 ..     131     202 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
   IstB_IS21 28 rsldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLvee 89
                +++ kr+v +    + + + e  vllGp G GKs l  al+  + ++g   l++  edL+++
  EHU00234.1 12 TGYPKRQVIDNLHVEPLPRGEITVLLGPNGCGKSTLLRALA--GLNKGQGELWLNGEDLMTQ 71
                5667777777777788889999****************996..5777777788888888766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.8
   IstB_IS21 100 aralkrllkv.dllilDdlgllpldqaeaellfevie 135
                    +++l++  +ll+lD+  l  ld + + ++++++ 
  EHU00234.1 146 VGLAQSLIRRpALLLLDE-PLSALDLNYQFHVMDLVR 181
                 455555554438888887.355555555555555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.9e-05     0.039       2      39 ..      34      74 ..      33     208 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.9e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklg..avl.lssdtlrrrlfg 39
                ++l G++G+GKstl++ l+  ++  ++l l+  +l+++ f+
  EHU00234.1 34 TVLLGPNGCGKSTLLRALAGLNKgqGELwLNGEDLMTQPFA 74
                5789**************86666565555777776665555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.7e-05     0.031       3      22 ..      34      53 ..      32     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-05
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                 +l G++G+GK+tLl+ la 
  EHU00234.1 34 TVLLGPNGCGKSTLLRALAG 53
                689*************9985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00011      0.07       3      25 ..      35      57 ..      33      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                EEE--SSSSHHHHHHHGGGGBS- CS
       AAA_5  3 lLvGppGtgKselaerlaaalnr 25
                +L+Gp G+gKs+l + la + + 
  EHU00234.1 35 VLLGPNGCGKSTLLRALAGLNKG 57
                79***************988644 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.8e-05     0.052      89     108 ..      33      52 ..      22      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
  Adeno_IVa2  89 iGviyGPtGsGksqllrnli 108
                 i v+ GP G+Gks llr+l 
  EHU00234.1  33 ITVLLGPNGCGKSTLLRALA 52 
                 889***************95 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.8e-05     0.052      19      58 ..      32      89 ..      25     199 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.8e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaag..................grviglAptgka 58
                 ++vl Gp G GK+t+l+al+ + + +g                  ++v+ l  +  a
  EHU00234.1 32 EITVLLGPNGCGKSTLLRALAGLNKGQGelwlngedlmtqpfarraRQVVYLPQSLPA 89
                4899*****************9999888777777665555555555555555444444 PP

>> HSM3_N  DNA mismatch repair protein HSM3, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.5e-05     0.043      52     125 ..     158     231 ..     117     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.5e-05
      HSM3_N  52 llvenksedkldydlllelldklvkvssfedvlevysvddlvkalkseidslvvaackvieksyPkglfatsei 125
                 ll+ +++ + ld ++ ++++d + + +++ ++++v  v+d+  al+   ++l+  a ++i++  P ++ +++++
  EHU00234.1 158 LLLLDEPLSALDLNYQFHVMDLVRRETALRNMVTVVVVHDINIALRHAQHALMLKAGRLIAEGAPDSVITPTTL 231
                 7788889999*******************************************************999887765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.6e-05     0.057      21      43 ..      32      54 ..      25      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-05
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiien 43
                ei ++ Gp g+GK++Ll+ ++  
  EHU00234.1 32 EITVLLGPNGCGKSTLLRALAGL 54
                799***************88755 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.9e-05     0.066      27      49 ..      32      54 ..      22      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.9e-05
      AAA_27 27 dlhliyGpNEAGKstalrAisdl 49
                ++++++GpN  GKst+lrA+  l
  EHU00234.1 32 EITVLLGPNGCGKSTLLRALAGL 54
                68899**************9866 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00016      0.11       3      24 ..      32      53 ..      30      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
      AAA_14  3 kilvitGaRrvGKTtllkqlik 24
                +i v+ G+  +GK+tll+ l+ 
  EHU00234.1 32 EITVLLGPNGCGKSTLLRALAG 53
                799**************99984 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00033      0.22       3      22 ..      36      55 ..      35      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00033
      AAA_18  3 ltGtpGvGKttlakeLskrl 22
                l G+ G+GK+tl ++L+ ++
  EHU00234.1 36 LLGPNGCGKSTLLRALAGLN 55
                89**************8764 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00049      0.33       3      21 ..      35      53 ..      33     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00049
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                +++G    GKStL++al g
  EHU00234.1 35 VLLGPNGCGKSTLLRALAG 53
                689999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1726.05
//
Query:       EHU00235.1  [L=358]
Description: iron(III) dicitrate transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-85  287.5  38.6    1.2e-85  287.3  38.6    1.0  1  FecCD     FecCD transport family
     0.0004   20.0  23.1    0.00061   19.4  23.1    1.3  1  ABC-3     ABC 3 transport family
  ------ inclusion threshold ------
        4.4    7.6   5.8         45    4.4   1.7    2.8  2  DUF1430   Protein of unknown function (DUF1430)


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3  38.6     2e-89   1.2e-85       2     312 .]      39     353 ..      34     353 .. 0.97

  Alignments for each domain:
  == domain 1  score: 287.3 bits;  conditional E-value: 2e-89
       FecCD   2 lllllllslllgavkispsevfeallgka..dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlallll...l 95 
                 +l++l+l ++lg++ +s+s++++ ll+ +  d   + iv+++rlp +l+a++vG aL++aGa +Qt+++NpLa+P +lG+ss+aa+ga+la++l+    
  EHU00235.1  39 ILASLVLDFTLGPAGLSLSTLWHTLLSPEsvDAGTRVIVWDIRLPYALMAIVVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIILGvgiP 137
                 456677778*****************99988888899**********************************************************9999 PP

       FecCD  96 gslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllll 194
                 g ++++ +++ af++alla+l++  ++ + ++ s+  ++L+Gia+ + ++al+s+++++++e++l+ ++fw++Gsl++asw+k+ +l+++++ll++++l
  EHU00235.1 138 GISGQWFISANAFIFALLAALMLDGIT-RWTQVSSSGVVLFGIALVFTFNALVSMMQFIASEDTLQGLVFWTMGSLARASWEKLGVLSAAFVLLVPFSL 235
                 99999**********************.99999****************************************************************** PP

       FecCD 195 llarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelp 293
                 l + kl++l+lg++ A s+G++v+r+rl++ll +++l+a+ava+vGpigF+GL++Phiar+++g+dhr  lp+sal+Gal+l la +++++l+  + +p
  EHU00235.1 236 LSSWKLTALRLGEDRAVSFGIDVRRLRLATLLRISVLSALAVAFVGPIGFIGLVAPHIARMMFGEDHRFYLPASALTGALVLSLASVASKNLIPGAIIP 334
                 *************************************************************************************************** PP

       FecCD 294 vgivtaliGapffiylllr 312
                 vgivt+liG+pff+ ++lr
  EHU00235.1 335 VGIVTSLIGVPFFLSIILR 353
                 **************99987 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  23.1     1e-07   0.00061       6     235 ..      86     327 ..      81     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-07
       ABC-3   6 qrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvn.........lllgailvgliaavalellkrktklkedtai..givlsvf 93 
                 + a++++++++la a + + +    +s +  ++s aa  G ala++lgv          +++ a++++l+aa++l  ++r t++++  ++  gi l ++
  EHU00235.1  86 LMAIVVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIILGVGipgisgqwfISANAFIFALLAALMLDGITRWTQVSSSGVVlfGIALVFT 184
                 56888999999999999998888899**********************999999***999999*********************998764226666666 PP

       ABC-3  94 lalglvlvslikk..skvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGvi 190
                 +   + +++ i +  + ++l  + +G+++  s e l +++++ ++++   ll   +l+++ + e+ A + g+ v++l+l  l+ i++  ++a+ +vG i
  EHU00235.1 185 FNALVSMMQFIASedTLQGLVFWTMGSLARASWEKLGVLSAAFVLLVPFSLLSSWKLTALRLGEDRAVSFGIDVRRLRLATLLRISVLSALAVAFVGPI 283
                 55433344444423377778888889999999999999888888888888888889**********************99999999999********** PP

       ABC-3 191 LvialliiPaatArrltrslesllivAillglvsvvaGlllSyyl 235
                   i  l++P ++ ++++++ +  l  ++l+g++ + + ++ S  l
  EHU00235.1 284 GFIG-LVAPHIARMMFGEDHRFYLPASALTGALVLSLASVASKNL 327
                 9998.589*999999999999988888888888777766666543 PP

>> DUF1430  Protein of unknown function (DUF1430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.7    0.0075        45      31      84 ..     139     192 ..     134     205 .. 0.72
   2 ?    4.2   0.1    0.0084        50      33      81 ..     295     343 ..     288     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0075
     DUF1430  31 ihGyslfkrhkeyliiqlivllillvlifiltkekiillvvlvlllielllill 84 
                 i+G  +++ +   + ++ +++l +++  + ++++ ++l+ + +++++++l++++
  EHU00235.1 139 ISGQWFISANAFIFALLAALMLDGITRWTQVSSSGVVLFGIALVFTFNALVSMM 192
                 677777777665555555555556666666667999999999*******99765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0084
     DUF1430  33 Gyslfkrhkeyliiqlivllillvlifiltkekiillvvlvlllielll 81 
                  + + + h+ yl ++ ++  ++l l+++ +k+ i   ++ v ++++l+ 
  EHU00235.1 295 RMMFGEDHRFYLPASALTGALVLSLASVASKNLIPGAIIPVGIVTSLIG 343
                 5677899*********************************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2726.34
//
Query:       EHU00236.1  [L=459]
Description: RNA-directed DNA polymerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-43  146.4   0.0    1.7e-42  145.4   0.0    1.5  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.2e-17   63.7   4.0      3e-17   62.4   4.0    1.7  1  GIIM      Group II intron, maturase-specific domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   1.9e-46   1.7e-42       1     221 [.     115     320 ..     115     321 .. 0.95
   2 ?   -3.7   0.0      0.75   6.7e+03     103     118 ..     385     400 ..     374     416 .. 0.50

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1.9e-46
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ipK+g g+ R +++++v ++++++++ + L+++l++++se+++gfrpgr   dav  ++++  ++ + ++++++Dl+k+Fd+v+++ l+ +l +   + 
  EHU00236.1 115 IPKPG-GGQRELGIPTVTDRLIQQALLQVLQPLLDPTFSEHSYGFRPGRRAQDAVLAAQAF--AQSGRRVVVDVDLEKFFDRVDHDILIGRLRKRIDDA 210
                 8****.***********************************************88666666..88*****************************88888 PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                  +i l++++l     ++ ++g   + +  k g+pqG++lSPll+n++++e+++el++r  g  ++rYaDD+ ++++s+ + q+++  +++ +++ +lk+
  EHU00236.1 211 GVIWLVRAYL----NAGIMDGG--TIIQRKLGTPQGGPLSPLLANVLLDEVDKELERR--GHSFVRYADDCNVYVNSRRAGQRVMALLVRLFNRLKLKV 301
                 8999999999....67789997..79999****************************8..*************************************** PP

                 EGGG-EEE.....ESSEEETTEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvt 221
                 n++K+ ++    ++ + k+LG+ 
  EHU00236.1 302 NEAKSAVA----SAFTRKFLGYA 320
                 ********....599******96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.75
                 ................ CS
       RVT_1 103 nliksflstrsfsvrv 118
                 ++++++l++r  ++++
  EHU00236.1 385 KTLEEWLRHRLRALQL 400
                 3344444444433333 PP

>> GIIM  Group II intron, maturase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   4.0   3.4e-21     3e-17       2      72 ..     339     409 ..     338     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.4e-21
        GIIM   2 krlkrkireltkrsskgvsleelirklnpilrGWanYyrlgvakrvfskldhyirrrLrrwllrkhkkkk.r 72 
                 +++++++r+lt+r+  g s+ e+i++l p+l GW +Y++l+++ rv ++l++++r+rLr+  l+++++ +  
  EHU00236.1 339 AAFRHRVRKLTQRN-GGRSMTEVIQRLRPYLLGWRAYFSLAQTPRVWKTLEEWLRHRLRALQLKQWRRGTtM 409
                 78*********777.99**************************************************96642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3580.02
//
Query:       EHU00237.1  [L=486]
Description: lysine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.6e-142  473.5  36.9   7.9e-142  473.2  36.9    1.0  1  AA_permease    Amino acid permease
    1.9e-41  142.3  40.7    2.7e-41  141.8  40.7    1.3  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.2  36.9  8.8e-146  7.9e-142       1     468 [.      21     469 ..      21     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 473.2 bits;  conditional E-value: 8.8e-146
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+gg iGtglfv++g ++sqaGp+gall+y+l+g+++++ m slge+a ++p+sg+f+ty ++++++ +Gf+ G+ny+++w++++a++l+a++
   EHU00237.1  21 HLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYALIGLMVYFLMTSLGELAAFMPVSGSFATYGAKYVEEGFGFALGWNYWYNWAVTIAVDLVASQ 118
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg...iillaggkpnkgagfrflgdngsifknnlppgfake 193
                   ++++w  ++d p  w+++a+fl ++++in+++vk++ge+e++++lik+ ++++fi+vg   i++++ g+ n+g      ++n+++ ++ + +g    
   EHU00237.1 119 LVMNYW--FPDTP-GWIWSALFLSLMFLINYISVKGFGETEYWFSLIKVATVVIFIVVGvlmIVGIMRGAENAG------WHNWQVGDAPFAGG---- 203
                  ******..*****.*********************************************888888888888888......99999999******.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvla 289
                      f+++i+v++iv f+f+G+el++i+agE++dP+k+iP+a++qv++ri++fYvl++l+i+l++p++d++ll   ++   +spf ++++++g+  +a
   EHU00237.1 204 ----FAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVLAILIISLILPYTDPQLLHNDIKDisVSPFTLVFQNAGLLSAA 297
                  ....********************************************************************9977766799**************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsy 387
                   ++navilta+ls++ns++y+++R+ly la++g aP++++++sk+gvP +a+ ++++++ l++l +++  +  +v+ +ll+ s++ g+i wl i++s+
   EHU00237.1 298 AVMNAVILTAVLSAGNSGMYASTRMLYNLACEGKAPRIFARLSKGGVPRNALWATTVVAGLCFLTSKFGNQ--EVYLWLLNTSGMTGFIAWLGIAISH 393
                  ***********************************************************************..************************* PP

  AA_permease 388 lrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvkl 468
                  +rfR+ + +qgr++ +l++++ ++plg+i+++++++ii+l +++ a+l+     +++++ s+aa+y++++lfl+i++g+ l
   EHU00237.1 394 YRFRRGYVAQGRDLGDLPYRSGFFPLGPIFAFVLCLIITLGQNYQAFLQ-----DTIDWYSVAATYIGLPLFLLIWLGYRL 469
                  *************************************************.....9**********************9976 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8  40.7     3e-45   2.7e-41       4     403 ..      20     435 ..      17     463 .. 0.83

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 3e-45
  AA_permease_2   4 lsafalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    + +++++ig  ig+g fv++    + a +g al+ + +i+ ++++  ++  + El++ +p sg   +y+++   + ++f  +w +w+ +++++ ++
     EHU00237.1  20 RHLTMIAIGGSIGTGLFVASgatiSQAGPGGALLSYALIGLMVYF--LMTSLGELAAFMPVSGSFATYGAKYVEEGFGFALGWNYWYNWAVTI-AV 112
                    5789***************99866555577777777777777775..566789***99*********************************77.99 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg..ggfsslstetdtffpngwpg 189
                      va +  +n ++pd+ g+ w      +++l l +lin++++k+ +    +  ++k+  +++i+i++g++++ g  +g+      +++++ +  p+
     EHU00237.1 113 DLVASQLVMNYWFPDTPGWIW-----SALFLSLMFLINYISVKGFGETEYWFSLIKV-ATVVIFIVVGVLMIVGimRGAE--NAGWHNWQVGDAPF 200
                    9**************988754.....4566***************************.6999999999999966445555..46888888887775 PP

  AA_permease_2 190 ......vllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsn.....lgsvaalffeavggkvv 272
                          ++++ +iv +sf+G e +   + e  ++ k++p+a   ++  +l++y+l  + +  ++p    + l+n     ++s+++l+f+++g   +
     EHU00237.1 201 aggfaaMIGVAMIVGFSFQGTELIGIAAGEseDPAKNIPRAVRQVFWRILLFYVLAILIISLILPYTDPQLLHNdikdiSVSPFTLVFQNAGLLSA 296
                    33222246666779****************66667*******99999999999999999999999888766665444457778*********999* PP

  AA_permease_2 273 aiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliig 368
                    a++++++i  ++l a+n+ +++s+r+l+ la +g  Pr fa+ +k g p +a++ t +v+ +++l + +++ + y +ll++s +  +i +l ++i+
     EHU00237.1 297 AAVMNAVILTAVLSAGNSGMYASTRMLYNLACEGKAPRIFARLSKGGVPRNALWATTVVAGLCFLTSKFGNQEVYLWLLNTSGMTGFIAWLGIAIS 392
                    ****************************************************************9999*99*****************99999988 PP

  AA_permease_2 369 alilrkkrphlkr........pgkilvaiigalfllfllvalf 403
                        r+    ++r         g+ +++ i+a++l++++ ++ 
     EHU00237.1 393 HYRFRRGYVAQGRdlgdlpyrSGFFPLGPIFAFVLCLIITLGQ 435
                    8877777777788888895555556777776666666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3641.56
//
Query:       EHU00238.1  [L=289]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-46  158.8   0.1    1.7e-46  158.2   0.1    1.2  1  LysR_substrate  LysR substrate binding domain
    5.8e-18   64.6   2.7    1.1e-17   63.8   1.2    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    2.8e-05   23.3   0.0    8.8e-05   21.7   0.0    1.6  2  PBP_like        PBP superfamily domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.1   2.8e-50   1.7e-46       3     206 ..      86     288 ..      85     289 .] 0.98

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 2.8e-50
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG..SSS CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar..gep 95 
                     ++ g +ri a++t+++yllp ++a +r+ +P + lel++g+s++++ ++ + ++D++++ gp++ ++l+++p++e++lv++a+pd    +   +p
      EHU00238.1  86 EDNGAIRIYASSTIGNYLLPGMIAGYRRDFPTLPLELSVGNSQDVITAVSDFRVDVGLIEGPCHMTELVSEPWLEDELVVFAAPDA---AilLQP 177
                     67899********************************************************************************5...33688* PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETT CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkg 190
                     v+l  La+ ++il+e+gsg+r+ ++ +l ++  + + ++e+ + ea++++v++G+Gi++l+r ++++ l +g l+ l  p p+l+r+ly +++++
      EHU00238.1 178 VTLTSLAEATWILRERGSGTREIVDYLLLSHLPTFQLGMELGNSEAIKHAVRHGMGISCLSRRVIAEQLSAGTLIELKTPLPNLTRTLYRIHHRQ 272
                     *********************************************************************************************** PP

                     CCCHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflre 206
                     ++ s+a+ +f+ ++re
      EHU00238.1 273 KHISKALSRFLSYCRE 288
                     *************998 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   1.2   1.8e-21   1.1e-17       1      60 []       5      64 ..       5      64 .. 0.98
   2 ?   -1.1   0.0      0.32   1.9e+03      23      36 ..     268     281 ..     260     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.8e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrq+++f +v ++gs t+A + L lsq+avs+++++LE++lgv+Lf+R g++l+L e+G+
  EHU00238.1  5 LRQIEVFTEVLKSGSTTQASQVLALSQSAVSAALADLENQLGVQLFDRVGKRLVLNEHGR 64
                79********************************************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.32
                 HTS-HHHHHHHHHH CS
       HTH_1  23 Lglsqpavsrqikr 36 
                  +  q+++s++++r
  EHU00238.1 268 IHHRQKHISKALSR 281
                 56789999999986 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.3   1.8e+03     132     150 ..     126     144 ..     121     172 .. 0.80
   2 !   21.7   0.0   1.5e-08   8.8e-05      92     168 ..     184     256 ..     178     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.3
                 SHHHHHCCHCCETTCCECC CS
    PBP_like 132 shlavaaaVaagradvgvg 150
                 ++++v +aV++ r+dvg+ 
  EHU00238.1 126 NSQDVITAVSDFRVDVGLI 144
                 5688999999999999974 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.5e-08
                 -B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE- CS
    PBP_like  92 aplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfvplae 168
                 a+++++ Re+GSGtr   d+ll    +s     + + e  ++ a++ aV++g++  +++ + +ae+l  ++ ++l++
  EHU00238.1 184 AEATWILRERGSGTREIVDYLL----LSHLPTFQLGMELGNSEAIKHAVRHGMGISCLSRRVIAEQLSAGTLIELKT 256
                 6789******************....56667788888******************************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2277.74
//
Query:       EHU00239.1  [L=121]
Description: uncharacterized DUF1232 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-13   50.2   8.1    1.6e-13   50.2   8.1    2.3  2  DUF1232      Protein of unknown function (DUF1232)
  ------ inclusion threshold ------
      0.041   14.3   0.4      0.056   13.9   0.4    1.2  1  Sigma_M_inh  Sigma-M inhibitor


Domain annotation for each model (and alignments):
>> DUF1232  Protein of unknown function (DUF1232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   8.1   1.8e-17   1.6e-13       2      36 ..      34      68 ..      33      69 .. 0.96
   2 ?   -0.4   1.7      0.11     1e+03       3      13 ..     109     119 ..     107     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.8e-17
     DUF1232  2 klliagalaYlisPiDlIPDfiPvlGflDDlavlt 36
                k+l+ag laY isPiDlIPD+iPv+G++DD+++++
  EHU00239.1 34 KGLAAGLLAYGISPIDLIPDVIPVVGLVDDAVIIP 68
                89*******************************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
     DUF1232   3 lliagalaYli 13 
                 ll ++ ++Yl+
  EHU00239.1 109 LLWIALIVYLV 119
                 688999***98 PP

>> Sigma_M_inh  Sigma-M inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   6.2e-06     0.056      29      85 ..      63     119 ..      51     121 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
  Sigma_M_inh  29 nlailsdviaysykmlpfamaavplgvvelfikkgrtglgllgvvlnlfvlvcvyti 85 
                  +  i+   ++   kmlp  + a  +   +    +g+  lg+lgv++ l++ + vy +
   EHU00239.1  63 DAVIIPAGVMLLLKMLPREVRARSVARAQQQRARGKKVLGVLGVIFLLWIALIVYLV 119
                  5567788888999****************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.54
# Mc/sec: 678.38
//
Query:       EHU00240.1  [L=350]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-102  342.0  20.8   2.6e-102  341.8  20.8    1.0  1  Cons_hypoth698  Conserved hypothetical protein 698


Domain annotation for each model (and alignments):
>> Cons_hypoth698  Conserved hypothetical protein 698
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.8  20.8  1.5e-106  2.6e-102       1     303 [.      17     326 ..      17     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 341.8 bits;  conditional E-value: 1.5e-106
  Cons_hypoth698   1 pGLllllliavlalllakve.llfaklsalllAillGillgn..flklqeqlkaGvafskkklLrlgivllGfrltlsdiakvGlkgvlldiivl 92 
                     pGLll+ lia +   +a+v+ ++   l++l+lAi+lGi++gn  +  l+ q++aGv+ +k+klLrlg++l+Gfr+tl++i +vGl+g+l+d+++l
      EHU00240.1  17 PGLLLCGLIASVTAAVAQVPgIARLGLGSLTLAIMLGIIVGNsvYSPLAGQCDAGVQLAKQKLLRLGVILFGFRITLQQITDVGLSGLLIDVLTL 111
                     7*****************************************988899*********************************************** PP

  Cons_hypoth698  93 istfllvlllgakllkldkklalLvaaGssiCGasAilavepvikareeevalaiavivllgtvamllyPalatllslt.....deefgvfaGas 182
                     +stf++++llg +llkld+++++L++aGssiCGa+A+la+epv+ka +++va+a+a++vl+gt+a+++yP+l +l++         +fg+f G++
      EHU00240.1 112 SSTFFVTCLLGRRLLKLDRETVWLIGAGSSICGAAAVLATEPVVKAAPSKVAVAVATVVLFGTLAIFIYPVLWPLMHDFfprvtLTQFGIFTGST 206
                     ****************************************************************************9877788789********* PP

  Cons_hypoth698 183 vhevaqVvaagelvseeaakiAvivKltRvlllapvvlllslllakreeesetkeakitiPwFvlgFlvvallntlvllpselvsalktlstlll 277
                     +hevaqVvaag+++ +e+++ Avi+K++Rv+llap++llls+ l+++++e+++++   t+PwF+l+F+vval+n+l++lp+  v++++tl ++ll
      EHU00240.1 207 IHEVAQVVAAGHSIAPETESSAVIAKMLRVMLLAPFLLLLSVALRHEQAEQQSAK-PVTFPWFALMFVVVALFNSLHWLPAGWVNMFNTLGGILL 300
                     *****************************************77766666554444.99************************************* PP

  Cons_hypoth698 278 vmalaAlglktdlkalkkaglkplll 303
                     +ma+aAlgl+t + al+ ag kp+ll
      EHU00240.1 301 TMAMAALGLTTRFTALRAAGYKPVLL 326
                     ***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3026.87
//
Query:       EHU00241.1  [L=309]
Description: hypothetical protein CKS_2168 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-83  277.8   0.1    6.2e-83  277.4   0.1    1.2  1  Transposase_31  Putative transposase, YhgA-like


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.4   0.1   3.4e-87   6.2e-83       1     202 [.       9     209 ..       9     211 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.4 bits;  conditional E-value: 3.4e-87
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDalf+++l++p+ ardf+ ihlp++l++l+dl+tlklesgsf+e++lr+++sD+L+svkt +g egyi+vliEh+s pdk+mafrL+rYava
      EHU00241.1   9 TPHDALFRQFLTEPDVARDFMAIHLPQALRALCDLTTLKLESGSFVEDDLRQYYSDVLYSVKTASG-EGYIHVLIEHQSGPDKHMAFRLMRYAVA 102
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+a++++ lplvip++fY G+++ +p sl++ld f+ p+ a +ly+ +f+LvD+t++pddeil++rr+a+l+l+qkhi+qr+l+ +l++l
      EHU00241.1 103 AMHRHLQAGHQT-LPLVIPVLFYTGKRSpYPDSLCWLDGFALPDQAGKLYTAAFPLVDVTRIPDDEILHHRRMAALTLLQKHIHQRNLTVMLDRL 196
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeq 202
                     v +l++ + +++q
      EHU00241.1 197 VAILTNEYLSSSQ 209
                     *****99988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2468.04
//
Query:       EHU00242.1  [L=280]
Description: endonuclease IV with intrinsic 3'-5' exonuclease activity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-39  135.5   0.3    2.5e-39  134.9   0.3    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.3   1.4e-43   2.5e-39       3     210 .]      20     239 ..      18     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.4e-43
                   HHHHCT-SEEEEECCTCSHHHHC..HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS...HHHHHHHHHHHHHHHHHHTBSEEEEEBCCG CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvsel..sdeelrelrkaldelglriaslslftrfgypdederear...reesvdalkraielaaaLGapllvlhpGta 94 
                   +a+e+ ++++ lf++++++++++  sde+++++r+a++++++   s ++ ++++y+   +++++    ++s+da+ +++++a++LG  ll++hpG  
    EHU00242.1  20 RAHELEATAFALFTKNQRQWKAAplSDETIAAFRAACEKYHFS--SDQILPHDSYLIN-LGHPVmeaLQKSRDAFVDEMQRAEQLGLTLLNFHPG-- 111
                   588999***************99********************..8888888888665.577778889999************************.. PP

                   BCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTT.EEEEEEHHHHHHH......TTTHHHHHHHHHGG CS
  AP_endonuc_2  95 gagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspn.vgvclDtgHllia......eedvddalraladr 182
                   ++++  +e ++++r+aes+n ++d   +++v+ ++E++ag+g++lg   e+l  +++ v+++  vgvc+Dt+H+++       e+ + ++++++++ 
    EHU00242.1 112 SHLQQIDELTCLKRIAESINIALDQ--TRNVTAVIENTAGQGSNLGFrfEHLSTIIEHVEDKSrVGVCIDTCHAFAGgydlcsEAACTETFAEFDRI 206
                   999999*******************..78***************999************************************88888899998888 PP

                   .....EEEEEE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 183 .....ikhvHikDakgdlgagrdrhvpigeGei 210
                        ++ +H++Dak +lg+++drh+++geG+i
    EHU00242.1 207 vgfnyLRGMHLNDAKSTLGSRVDRHHSLGEGNI 239
                   99999**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2233.53
//
Query:       EHU00243.1  [L=565]
Description: PTS system fructose-specific IIB'BC component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-22   77.7   1.3    6.4e-18   65.2   0.3    2.6  2  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit
    4.3e-14   52.3  35.8    4.3e-14   52.3  35.8    3.0  2  PTS_EIIC  Phosphotransferase system, EIIC
  ------ inclusion threshold ------
      0.016   15.0   4.1        0.1   12.3   0.0    2.3  2  DUF745    Protein of unknown function (DUF745)


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0001      0.61       8      55 ..      11      48 ..      10      80 .. 0.65
   2 !   65.2   0.3   1.1e-21   6.4e-18       2      86 ..     112     198 ..     111     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                SSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEE CS
     PTS_IIB  8 aGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllap 55
                +G+a+ +ma+++l  aa ++g+  + +             a lv+++ 
  EHU00243.1 11 TGLASAYMAKQRLAAAAAQAGLTLTENPAE----------AELVIVTG 48
                8*******************9443332222..........33333333 PP

  == domain 2  score: 65.2 bits;  conditional E-value: 1.1e-21
                 EEEEESSSHHHHHHHHHHHHHHHHHCT....EEEEETTEE..GGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHHH CS
     PTS_IIB   2 illaCgaGmatSlmaaeklekaakelg....ieaegeagv..eleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdgek 86 
                 +++aC++G+a+++maae+++ +a ++g    +e++g+ g+  +++ ee+a+ aDlv++a++++v dla+fagkp +++++  al  +++++
  EHU00243.1 112 AVTACPTGVAHTFMAAEAIQAEATKRGwwvkVETRGSVGAgnAITPEEVAA-ADLVIVAADIEV-DLAKFAGKPMYRTSTGLAL--KKTAQ 198
                 89***************************************9999999999.***********9.*********9999988777..55555 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3  35.8   7.2e-18   4.3e-14       3     324 .]     237     500 ..     235     500 .. 0.85
   2 ?   -1.2   0.8      0.14   8.1e+02     159     185 ..     522     548 ..     508     556 .. 0.69

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 7.2e-18
    PTS_EIIC   3 gfmlpiplliagGillglgn.lpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvll 100
                 g+++++p ++agG+ ++l++ +++          ++ +  +  a++++ +g+ +fa++++ +a  ia ++   +++ + ++ + g++a ++        
  EHU00243.1 237 GVSYMLPMVVAGGLSIALSFaFGI---------TAFKEPGTLAAALMQIGGGSAFALMVPVLAGFIAFSI--ADRPGLTPGLIGGMIATSI-------- 316
                 789*****************3333.........345567777889*************************..5666666888889998665........ PP

    PTS_EIIC 101 laagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsg 199
                                    + g++g+ii+g++a+y+ + ++   ++kLP+s + +    ++p++ +l++ l++ +v++  + +i++gl++   +l ++g
  EHU00243.1 317 -------------------NAGFLGGIIAGFIAGYAAKLISG--KVKLPQSMEALKPILIIPLFASLITGLLMIYVVGKPVAGIMSGLTS---WLAHMG 391
                 ...................99*********************..9********9999999999999977777655555555555555555...788888 PP

    PTS_EIIC 200 sllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflf 298
                   ++++++g++ + +++++++++++++++ +++ g+l +   q y            ++ ++m +g+ ++la+ +a++ ++++ +k++  ++ + ++++
  EHU00243.1 392 -TANAILLGAILGGMMCTDMGGPVNKVAYAFGV-GLLSS---QTYA-----------PMAAIMAAGMVPPLAMGLATLVARRKFNKGQQEGGKA-ALVL 473
                 .78***************************998.66666...3333...........2344********************************9.69** PP

    PTS_EIIC 299 GItepleFgfpfvlnll.lfipallag 324
                 G+ ++ e ++pf ++ +  ++p+++ g
  EHU00243.1 474 GLCFISEGAIPFAARDPmRVLPCCIVG 500
                 ***************997788888876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.14
    PTS_EIIC 159 rfvpiittlvvllvvglvllliwpaiq 185
                  fv +i++ ++ ++ +l+  +i+ ai 
  EHU00243.1 522 LFVLLIPGAITPVLGYLLSIVIGTAIA 548
                 699999999666664444444555554 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.7     0.017     1e+02      31      50 ..      12      31 ..       7      44 .. 0.86
   2 ?   12.3   0.0   1.7e-05       0.1      54     134 ..      54     134 ..      52     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.017
      DUF745 31 aeaAakqvksqLAdkAlqAa 50
                + a a+++k++LA +A+qA 
  EHU00243.1 12 GLASAYMAKQRLAAAAAQAG 31
                668899***********995 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.7e-05
      DUF745  54 eAaLaGKqqlveqleqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqel 134
                 +AaL+GK++ +  ++q ++e e+ +++ k++ +  +a a+a a++ ++a ++      ++ a  + ++++  +a+  q+e+
  EHU00243.1  54 DAALNGKSVWLGDVQQAVSEPEQFLNRAKAEAKPWQARAAAPAATPATASANGPKRVVAVTACPTGVAHTFMAAEAIQAEA 134
                 69*************************999998766666555555555544444444455555566666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3888.49
//
Query:       EHU00244.1  [L=312]
Description: fructose-1-phosphate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-66  223.1   0.0    6.3e-66  222.7   0.0    1.0  1  PfkB          pfkB family carbohydrate kinase
     0.0012   18.3   0.0     0.0019   17.6   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.25   10.8   0.0    1.3  1  PcrB          PcrB family


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   0.0   1.1e-69   6.3e-66      12     296 ..      14     292 ..       4     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.7 bits;  conditional E-value: 1.1e-69
                 EEEEEECSSH.TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEE CS
        PfkB  12 idliavsekl.egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedgertivfnr 109
                 +dl++++ ++ +ge++ vkt+  +a+G+g+NvA++l++lg+dv++ g++G+Dn  + + +++++ g+ +++++++++tr +++l++ ++d  ++++f  
  EHU00244.1  14 YDLVGYTPEIeRGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDN-QDGFQQLFSELGIANRFQVVNGRTRINVKLTEQNGD-VTDLNFSG 110
                 89***************************************************.**********************************98.8******* PP

                 GGGGGHHHHHHH.HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHH.CTESEEEEEHHHHHHHHTSCTHSHH CS
        PfkB 110 gaaadltkeele.ededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallell.aladllkpneeElealtgekledie 206
                     +++++ +  +++ +l++ d++ +sg+l++++  ++++++ +  + +     ++ d++     eal + l a ++l+kpn++Ele+++g+kl + +
  EHU00244.1 111 FRVTAQDWDRFTsDSLTWLGQFDMVCVSGSLPEGVDPDAFTRWMTELRTHC--PCIIFDSSR----EALVAGLkAAPWLVKPNRRELEIWAGRKLPTLQ 203
                 ***************************************************..778888888....5777777799*********************** PP

                 HHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSS CS
        PfkB 207 ealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgai 296
                 ++++a+h+l ++g+++vv++lG+eGal+v+ +ge+++++ p  +vv+t+GAGDs+vgg++++ll  +s e+ lr+a+avAa++v++++++
  EHU00244.1 204 DVINAAHELREQGIAHVVISLGAEGALWVNASGEWIAKP-PVCEVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAAMAVSQSNVG 292
                 ***************************************.9********************************************99876 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.2e-07    0.0019     113     233 ..     174     287 ..     164     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.2e-07
                   HHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHH CS
  Phos_pyr_kin 113 keeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaa 209
                      L     ++ PN  E+e  +g+k+ t++d+ +aa++l+++g  +V+i  g     e     ++++ +++ + + +  e  +t G+G+++   +  
    EHU00244.1 174 VAGLKAAPWLVKPNRRELEIWAGRKLPTLQDVINAAHELREQGIAHVVISLGA----EGA---LWVNASGEWIAKPPVCEVVSTVGAGDSMVGGLIY 263
                   555555566999*************************************9886....233...6778888888888899999999999888776666 PP

                   HHHCTSSHHHHHHHHHHHHHHHHH CS
  Phos_pyr_kin 210 elakgesleeAvkkAkeyvteaik 233
                    l   es e++++ A++    a++
    EHU00244.1 264 GLLMRESSEHTLRLATAVAAMAVS 287
                   666666666666666666665555 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.1e-05      0.25      31      75 ..     132     177 ..     122     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.1e-05
                 -SEEEEECST..CHHHHHHHHHHHHHCTSSS-EEEEESSGGG--TTS CS
        PcrB  31 tDavmigGsq..svtldntvrllkkvsriklPivlepsnvegvvrya 75 
                  D v ++Gs   +v+ d  +r + +  r++ P++++ s  e++v ++
  EHU00244.1 132 FDMVCVSGSLpeGVDPDAFTRWMTEL-RTHCPCIIFDSSREALVAGL 177
                 5999*****9889*************.9**************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2396.45
//
Query:       EHU00245.1  [L=376]
Description: IIA and HPr components of fructose-specific PTS enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-32  111.1   0.0    7.4e-28   97.3   0.0    2.6  2  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf
    1.5e-26   92.4   0.1    3.2e-25   88.2   0.0    2.6  2  PTS-HPr     PTS HPr component phosphorylation site


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   8.3e-32   7.4e-28       6     141 ..       7     138 ..       3     140 .. 0.94
   2 !   10.8   0.0   3.7e-05      0.33       3     141 ..     149     274 ..     148     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 8.3e-32
                 CGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC...BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE- CS
  PTS_EIIA_2   6 elifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea...vkkpaiavlklkepvdfeasdgkpvklifllal 101
                 + i    +a++ke+ai+q+a  l++ag v +   y++ +l+re++ st +gng+AiPH+++++   v+k+++ v +++++++++  d++ + +++ +a+
  EHU00245.1   7 QAIHTGASAQNKEDAIRQVAAALTAAGNVAEG--YVNGMLAREQQTSTFLGNGIAIPHGTTDTrdlVLKTGVQVFQFPQGIAWG--DDQTAYVAIGIAA 101
                 67888999**********************99..**************************776679******************..99*********** PP

                 SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHH CS
  PTS_EIIA_2 102 pekdaehlkilaqLaellkdeefvekLrkakseeeilell 141
                 ++++  hl++l qL+ +l+d++++e+L+ + s+e++++ll
  EHU00245.1 102 KSDE--HLALLRQLTHVLSDDSVAEQLK-TASAEDLRALL 138
                 ***9..9*********************.77888888877 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.7e-05
                 HHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCCBSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE- CS
  PTS_EIIA_2   3 ltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarleavkkpaiavlklkepvdfeasdgkpvklifllal 101
                 ++  li+ld++a +   + +  a +l +ag+v+ +  y+++++ r    + ++g+g+ +     ++ +++++av ++    + +   g+pv++++ +a+
  EHU00245.1 149 FDTSLITLDVNARDLMTLQALNAGRLQAAGVVDAS--YVADVVSRH---PLSLGQGIWLSDSG-KGNLQSGVAVSRAASAFEHQ---GEPVNMLISVAA 238
                 56678888888888888888888899999999988..999999886...57799999997655.46899999999999888665...9*********** PP

                 SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHH CS
  PTS_EIIA_2 102 pekdaehlkilaqLaellkdeefvekLrkakseeeilell 141
                  ++    l++l  L+ ll++++  + L+   +++ +++ll
  EHU00245.1 239 VDERP--LDVLGYLSALLQSNKADRLLK--ADAAGVYALL 274
                 **995..***********9988755554..4556666665 PP

>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.048   4.3e+02      34      55 ..     156     172 ..     143     178 .. 0.75
   2 !   88.2   0.0   3.6e-29   3.2e-25       3      81 ..     287     368 ..     285     369 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.048
                 EEE....EETTSHHHHHHCTCS CS
     PTS-HPr  34 lekkdkpvnaksilglmsLgvk 55 
                 l      vna++++ l +L++ 
  EHU00245.1 156 L-----DVNARDLMTLQALNAG 172
                 3.....39********999986 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 3.6e-29
                 EEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE.......EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHHC CS
     PTS-HPr   3 kkvtiknekGlhaRpAamlvqaasefksevtlekkd...kpvnaksilglmsLgvkkGeevtvsaeGedeeealealaelle 81 
                  ++ti+ne+GlhaRp + lv + ++f+se+t+++ d   kp+n++s++++++LgvkkG++++++a+G+d+++al+a++e+++
  EHU00245.1 287 AEFTIRNEHGLHARPGTALVSVIKQFNSEITITNLDgsgKPANGRSLMKVVALGVKKGHRLRFTASGDDAQQALDAIEEAIN 368
                 689******************************955568***************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2757.40
//
Query:       EHU00246.1  [L=84]
Description: hypothetical protein CKS_2161 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-06   28.3   3.6    5.2e-06   27.1   3.6    1.7  1  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   3.6   2.9e-10   5.2e-06       1      68 [.       2      56 ..       2      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.9e-10
    CxxCxxCC  1 eCke.CgaCCkelkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetklCkiYe..eRpkicrl 68
                eC++ CgaCC + +++ ++  + + k+a++               rCv+l +++ lCki+    Rpk+c  
  EHU00246.1  2 ECRTdCGACCIAPSISSPIPGMPQGKPANT---------------RCVQLADNN-LCKIFGspLRPKVCAG 56
                69999*************************...............********6.*****9778*****84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 601.54
//
Query:       EHU00247.1  [L=190]
Description: translation elongation factor P family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-17   62.2   0.0    7.6e-17   60.8   0.0    1.8  1  Elong-fact-P_C  Elongation factor P, C-terminal
    6.5e-17   61.3   0.8    1.4e-16   60.2   0.3    1.8  2  EFP_N           Elongation factor P (EF-P) KOW-like domain
    7.5e-15   54.7   0.3    1.4e-14   53.8   0.3    1.5  1  EFP             Elongation factor P (EF-P) OB domain
     0.0096   15.8   0.1      0.031   14.2   0.0    1.8  2  DUF4357         Domain of unknown function (DUF4357)


Domain annotation for each model (and alignments):
>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   1.7e-20   7.6e-17       1      56 []     133     188 ..     133     188 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.7e-20
                     EEEEEEE--SSS--SSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE CS
  Elong-fact-P_C   1 VeleVvetepgvkGdtasggtKpatletGaevqVPlFIneGdkIkvdTrtgeYvsR 56 
                     V++e+v+t pg+kG +as  tKpa ++tG++vqVP + ++G++I++   ++ Y++R
      EHU00247.1 133 VDMEIVDTSPGIKGASASARTKPAGMSTGLVVQVPEYLSNGERIRIHVAERRYMGR 188
                     789***************************************************98 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.3   3.1e-20   1.4e-16       1      57 [.       3      61 ..       3      62 .. 0.93
   2 ?   -1.8   0.0      0.75   3.3e+03      27      48 ..     141     164 ..     135     166 .. 0.63

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 3.1e-20
                EGGG--TT-EEEETTEEEEEEEE.EEEE.ETTS--EEEEEEEETTTS-EEEEEEETT-E CS
       EFP_N  1 saselkkGlvieidgklyvVlef.ehvk.pGkGqafvrvklknlrtGakvektfkagdk 57
                +a+e+kkG+++ ++gkl +V+++ + ++  ++ ++++++++ ++rtG kve++fk+++ 
  EHU00247.1  3 KANEIKKGMAVTHNGKLLLVKDIdVQSPsARGAATLYKMRFTDVRTGMKVEERFKGDEI 61
                69*********************8888867788889********************996 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.75
                 EET..TS--EEEEEEEETTTS-EE CS
       EFP_N  27 kpG..kGqafvrvklknlrtGakv 48 
                  pG  + +a  r+k   + tG +v
  EHU00247.1 141 SPGikGASASARTKPAGMSTGLVV 164
                 566544567778887777777666 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.3   3.2e-18   1.4e-14       1      54 []      70     125 ..      70     125 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 3.2e-18
                 EEEEEEEEETTEEEEEETTT--EEEEEHHHHTTGCGG--TT-E..EEEEEETTEEE CS
         EFP   1 remqylYkdgdeyvFMdnetYeqielpkeqlgdaakfLkEgme..vtvllyegepi 54 
                 r+++++Y dgdeyvFMd e+Y  ++++keq+++++ f+ Eg +  ++vl+ +g+++
  EHU00247.1  70 RSVTFSYIDGDEYVFMDDEDYTPYAFKKEQIEEELLFIPEGGIpgIQVLTMDGQVL 125
                 689*************************************9999*********985 PP

>> DUF4357  Domain of unknown function (DUF4357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     7e-06     0.031       3      30 ..       5      32 ..       3      38 .. 0.88
   2 ?   -2.0   0.1      0.81   3.6e+03      13      22 ..      78      87 ..      75      91 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7e-06
     DUF4357  3 kliedgvlvkeggllvfteDyeFsSPSa 30
                + i++g  v+++g+l + +D++++SPSa
  EHU00247.1  5 NEIKKGMAVTHNGKLLLVKDIDVQSPSA 32
                56899999999****************8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.81
     DUF4357 13 eggllvfteD 22
                +g+ +vf++D
  EHU00247.1 78 DGDEYVFMDD 87
                5899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1621.24
//
Query:       EHU00248.1  [L=325]
Description: putative enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-40  137.4   0.0    4.4e-40  137.1   0.0    1.1  1  cobW      CobW/HypB/UreG, nucleotide-binding domain
    0.00025   20.9   0.0    0.00058   19.7   0.0    1.7  1  CobW_C    Cobalamin synthesis protein cobW C-terminal domain


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   4.9e-44   4.4e-40       2     173 ..       4     176 ..       3     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 4.9e-44
                 EEEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTTTHHHH CS
        cobW   2 vtvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeereerldviliEttGlaePapv 99 
                 v +ltGflGsGKTt l hll ++ ag+++av+vNefge++iD++ll+++g+ + e+  Gc+Cc     ++  l++l+++  ++d++liE tGl +P ++
  EHU00248.1   4 VNLLTGFLGSGKTTTLLHLLaHKPAGENWAVLVNEFGEIGIDGALLANRGATLKEIPGGCMCCVNGLPMQIGLNRLLKQT-KPDRLLIEPTGLGHPRQL 101
                 6789****************999*********************************************************.9***************** PP

                 ..HTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS CS
        cobW 100 ..afteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnpea 173
                   ++t++ ++  ltl+a+++++Da++l + +  ++e+++dql aad+++ nK D  +++++ ++l+++ ++ +++ 
  EHU00248.1 102 ltMLTSPAYEPWLTLQATLTLLDARQLADPRILNNENFRDQLLAADIIIGNKRDRWSDHDK-QRLAQWRTAHQADR 176
                 86666**********************999999*************************976.67776666655555 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.5e-08   0.00058       3      92 ..     242     321 ..     240     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.5e-08
      CobW_C   3 sfvfrarrpfdperleelleeelpegilRaKGivwlagkpdalvlqgvggrlrlepagawwaaededrrseLVfI.GrdldkealeeaLda 92 
                 ++ f  +  fd + l e+ +    +++ R+KG++++++    ++++  g+ +++e  ++       +++s++ +I     d++ l++aL +
  EHU00248.1 242 GWLFDNETVFDAQPLLEWARL---APVDRVKGFLRIKEG--SVSINRQGEDFHYELLDTT------SPDSRVEMIhSAPADWNSLQSALLK 321
                 689999***************...99************9..9*************44444......4569999994448889999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2721.02
//
Query:       EHU00249.1  [L=235]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-10   39.1   5.5    5.8e-10   39.1   5.5    2.5  3  PAP2           PAP2 superfamily
    5.8e-06   26.1  13.0    5.8e-06   26.1  13.0    1.9  2  PAP2_3         PAP2 superfamily
  ------ inclusion threshold ------
       0.37   11.3   5.1       0.24   11.9   1.9    2.3  2  PAP2_C         PAP2 superfamily C-terminal
       0.53   10.5   3.1         16    5.8   0.0    2.8  2  SpoIIIAC       Stage III sporulation protein AC/AD protein fa
        5.7    6.4  10.9        4.4    6.7   0.8    2.2  2  YibE_F         YibE/F-like protein


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.88   3.2e+03      64      79 ..      14      29 ..       9      61 .. 0.64
   2 ?    2.1   0.5     0.041   1.5e+02      65      98 ..      70     104 ..      67     109 .. 0.50
   3 !   39.1   5.5   1.6e-13   5.8e-10      50     129 ..     140     211 ..     113     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.88
        PAP2 64 afalalllalllrrkr 79
                a+ ++l+++++l++  
  EHU00249.1 14 ALGMMLFFSWYLPPHH 29
                5556666666665544 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.041
        PAP2  65 falalllalllrrkrkkig.lvllalillllavlv 98 
                 ++++ ll+l+l+ +  ++g +++la  +++l++ v
  EHU00249.1  70 LLAMGLLYLWLWYRETPTGrRRMLAIGITMLVTAV 104
                 55555555555555555554344444444444433 PP

  == domain 3  score: 39.1 bits;  conditional E-value: 1.6e-13
        PAP2  50 keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayr 129
                 ++ k+sfP  H ++ + +a++++ +++ + +         + ++ +vl+al R+ +g+H+++D+ +G l  +++++  + 
  EHU00249.1 140 DASKDSFPGDHGMMLMIFAAFMWRYFGFRPFL--------VGVVIVVLFALPRVMAGAHWFTDITVGSLSVVLVGLSWWL 211
                 56789**********************99999........89999**********************8766666554443 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       1.3   4.7e+03      64      81 ..       7      24 ..       3      29 .. 0.66
   2 !   26.1  13.0   1.6e-09   5.8e-06      18     186 ..      43     204 ..      32     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
      PAP2_3 64 ttlllatllgllvyalfP 81
                +t+ll+++lg+++++ ++
  EHU00249.1  7 VTILLLNALGMMLFFSWY 24
                566777777777776665 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1.6e-09
      PAP2_3  18 lnklllahpalavilala....YaslhfqvtllvlvllflrrrerlreflttlllatllgllvyalfPaagPrll.eeagfvdtvaaaslagalrdgas 111
                 +n+ + ahpa+a + a++    ++++ ++++ l++++l++r++  +r+ ++++ +++l++ +v      + P+ + ++  f d v+  s        ++
  EHU00249.1  43 FNNEMVAHPAFALLVAITnfrgFDAVSLLAMGLLYLWLWYRETPTGRRRMLAIGITMLVTAVVLNQAGHLLPVKHaSPTLFFDGVHRVS--------EL 133
                 3445569999999999999999*****************99999999999999999999888776666666655533333333222222........22 PP

      PAP2_3 112 ravllrgtienglaafPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalv 186
                   ++++++   +  +fP  H ++ +++a+++wr+   r  ++++++++vl ++  v  g H ++D+ +G + +++
  EHU00249.1 134 TGIPAKDA---SKDSFPGDHGMMLMIFAAFMWRYFGFR-PFLVGVVIVVLFALPRVMAGAHWFTDITVGSLSVVL 204
                 22333333...4556*********************99.9****************************9887665 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.83     3e+03      18      48 ..      78     106 ..      71     112 .. 0.52
   2 ?   11.9   1.9   6.8e-05      0.24      10      68 ..     150     205 ..     144     213 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.83
      PAP2_C  18 vlfileyspkklailkvillllallglflii 48 
                 ++++ + +p      +++++ +++l  ++++
  EHU00249.1  78 LWLWYRETPTGR--RRMLAIGITMLVTAVVL 106
                 444555555555..55555555555555554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.8e-05
      PAP2_C  10 HtvvltlavlfileyspkklailkvillllallglfliiasrkHYtvDVllglyittlv 68 
                 H ++l++++ f+++y   +   + v ++ +++l+ +  +++  H+  D+ +g + ++lv
  EHU00249.1 150 HGMMLMIFAAFMWRYFGFRP--FLVGVV-IVVLFALPRVMAGAHWFTDITVGSLSVVLV 205
                 99*****************8..444333.334444556788999999***998777665 PP

>> SpoIIIAC  Stage III sporulation protein AC/AD protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0045        16       4      22 ..      92     110 ..      91     116 .. 0.92
   2 ?    3.4   1.1     0.025        89      32      47 ..     171     186 ..     171     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0045
    SpoIIIAC   4 iagigiiaalladilkdag 22 
                 +++igi+  + a++l +ag
  EHU00249.1  92 MLAIGITMLVTAVVLNQAG 110
                 899**************99 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.025
    SpoIIIAC  32 lagkiiilllalplls 47 
                 l+g++i++l+alp+++
  EHU00249.1 171 LVGVVIVVLFALPRVM 186
                 79***********986 PP

>> YibE_F  YibE/F-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.8    0.0012       4.4       9      62 ..      53     105 ..      47     111 .. 0.76
   2 ?    4.0   3.5    0.0081        29      32      86 ..     153     207 ..     150     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
      YibE_F   9 llllllvggkkGlkallslvlnllvlilvllplllkgvspllvalilvilitvv 62 
                 ++ll+++   +G+ a+  l++ ll+l+l++     +g   +l++ i++++++vv
  EHU00249.1  53 FALLVAITNFRGFDAVSLLAMGLLYLWLWYRETP-TGRRRMLAIGITMLVTAVV 105
                 789*************************996666.5655555555555544443 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0081
      YibE_F  32 lvlilvllplllkgvspllvalilvilitvvtlllvngfnkktlaallgtllgvl 86 
                 +++i++ ++  + g+ p+lv +++v+l+++  ++  + + +  ++  l+++l+ l
  EHU00249.1 153 MLMIFAAFMWRYFGFRPFLVGVVIVVLFALPRVMAGAHWFTDITVGSLSVVLVGL 207
                 3444444566668***************998888877777777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1831.51
//
Query:       EHU00250.1  [L=188]
Description: Spr family lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-32  110.9   0.0    4.5e-32  110.2   0.0    1.3  1  NLPC_P60       NlpC/P60 family
     0.0026   17.9   0.0        1.8    8.6   0.0    2.2  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
  ------ inclusion threshold ------
      0.025   14.5   0.0      0.052   13.4   0.0    1.5  1  Amidase_5      Bacteriophage peptidoglycan hydrolase
      0.025   15.1   0.0      0.049   14.2   0.0    1.6  1  CHAP           CHAP domain
      0.047   14.0   0.0       0.12   12.7   0.0    1.6  2  LRAT           Lecithin retinol acyltransferase
      0.062   13.0   0.0       0.54    9.9   0.0    2.0  2  DUF1287        Domain of unknown function (DUF1287)
       0.15   11.0   0.0       0.25   10.2   0.0    1.2  1  DHQS           3-dehydroquinate synthase II
       0.21   11.1   0.0       0.59    9.6   0.0    1.6  2  E1-E2_ATPase   E1-E2 ATPase


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0     2e-35   4.5e-32       1     105 []      77     181 ..      77     181 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 2e-35
                 T-BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHHCCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETTEEEEEE.TTEEEEEETTSTTBH CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafaka.gielprssgeqeaagkkkeiskselkrGDLvffktkkgisHvgiYlgngkmlhas.sekvsvsslsekywk 97 
                 g++Yr GG +++g+DCs++v+ +f+++ g++lprs++eq+  gk+  i +s+l++GDLv+f+ +++ +HvgiYlgn++++has s++v +ssl+e+ywk
  EHU00250.1  77 GVRYRLGGDTKRGIDCSAFVQRTFREQfGLDLPRSTSEQQGTGKE--IARSRLRPGDLVLFRAGSTGRHVGIYLGNDNFVHAStSNGVMISSLNEDYWK 173
                 789************************************888888..**************************************************** PP

                 SCEEECCE CS
    NLPC_P60  98 krllgvrr 105
                 kr+ ++rr
  EHU00250.1 174 KRYREARR 181
                 ***99986 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0025       5.6      80     133 ..      63     115 ..      56     126 .. 0.81
   2 !    8.6   0.0   0.00081       1.8      26      60 ..     139     169 ..     126     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0025
  Peptidase_C92  80 eqrqkaaeaalrrlgkpYdfgFeleddrlYCsklVakaykealgikvktvellg 133
                    +++ +++++  +  g+ Y +g   +++ + Cs +V + ++e+ g+++++ ++ +
     EHU00250.1  63 DVKTRIMDQYASWKGVRYRLG-GDTKRGIDCSAFVQRTFREQFGLDLPRSTSEQ 115
                    567777888888889999999.55589999***************999877655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00081
  Peptidase_C92  26 sefkHvgivvgeegderlvveaaakegvrvtpLse 60 
                    s   Hvgi++g+ +     v+a++++gv +++L+e
     EHU00250.1 139 STGRHVGIYLGNDNF----VHASTSNGVMISSLNE 169
                    5568********999....9999**********97 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.052      66     119 ..     120     168 ..     112     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
   Amidase_5  66 keiaennakrGdifiwGvrGasaGagGhtglfidsesiihcnygangitvdnyd 119
                 keia++  + Gd++++  r +s+G   h+g+++ +++++h + + ng+ + + +
  EHU00250.1 120 KEIARSRLRPGDLVLF--RAGSTG--RHVGIYLGNDNFVHAS-TSNGVMISSLN 168
                 6777777777887775..444544..4*************98.78999887655 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-05     0.049       9      75 ..      91     152 ..      82     177 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
                 SHHHHHHHHHH.HHSSSSSSSECTCCH.HCEEEEEECSTBS--TTEEEEEETTTTBCT-.EEEEEEEESS CS
        CHAP   9 qCvefaywrlr.qaggnaddWnnakka.kgyknqanvgsstpkvGdivvfdrggeggyG.HVaiVekvdg 75 
                 +C +f+   +r q+   + d  ++++  +g    ++  +s  ++Gd+v f++g+   +G HV+i  + d+
  EHU00250.1  91 DCSAFVQRTFReQF---GLDLPRSTSEqQGTG--KEIARSRLRPGDLVLFRAGS---TGrHVGIYLGNDN 152
                 78899955555344...444422233312333..3344445589********99...777***9876665 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         2   4.6e+03      36      36 ..      49      49 ..      24      82 .. 0.51
   2 ?   12.7   0.0   5.2e-05      0.12       3      38 ..     127     163 ..     125     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
                . CS
        LRAT 36 t 36
                +
  EHU00250.1 49 Q 49
                1 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.2e-05
                 --TT-EEEEE-..SSSEEEEEEEETTEEEEEE-SB... CS
        LRAT   3 lkrGdllevsR..tlyeHhgiyvGdgkVvHltpestse 38 
                 l++Gdl+  +R   + +H giy+G+++ vH + +++  
  EHU00250.1 127 LRPGDLVL-FRagSTGRHVGIYLGNDNFVHASTSNGVM 163
                 78999998.55478889*************99766333 PP

>> DUF1287  Domain of unknown function (DUF1287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.18     4e+02      22      52 ..      79     110 ..      56     115 .. 0.68
   2 ?    9.9   0.0   0.00024      0.54     102     130 ..     121     150 ..     110     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.18
     DUF1287  22 gYPnGdvpeeeGv.CtDvviralrka.gidLqk 52 
                  Y  G  + ++G+ C+  v r++r++ g+dL +
  EHU00250.1  79 RYRLGGDT-KRGIdCSAFVQRTFREQfGLDLPR 110
                 45544333.344449999999999988999865 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00024
     DUF1287 102 daed.eyqpGdivvfkleekleHigivsdk 130
                 ++++ + +pGd+v+f+  ++ +H+gi   +
  EHU00250.1 121 EIARsRLRPGDLVLFRAGSTGRHVGIYLGN 150
                 33334799******************6554 PP

>> DHQS  3-dehydroquinate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00011      0.25     315     344 ..     118     147 ..     112     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
        DHQS 315 dgkaisvteLkeGdevlvyleekaRHfGik 344
                  gk+i+ ++L++Gd vl +  +++RH+Gi 
  EHU00250.1 118 TGKEIARSRLRPGDLVLFRAGSTGRHVGIY 147
                 5789999*********************86 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.97   2.2e+03     118     143 ..       7      32 ..       3      42 .. 0.70
   2 ?    9.6   0.0   0.00026      0.59      11      35 ..     115     139 ..     106     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.97
                   HHHHHHHHHHHHHHHHHHS-STTTSS CS
  E1-E2_ATPase 118 lgkvlvpvvlliallvflialllgks 143
                   + ++++ ++ ++al+++l a + +++
    EHU00250.1   7 ILRYIWRIAPALALATLLSACSSTHN 32 
                   56777777777777777776666555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00026
                   -TTS-EEEEGGG--TTSEEEEETT- CS
  E1-E2_ATPase  11 rdgteeeidakelvpGDivllkagd 35 
                   + gt +ei+ + l+pGD+vl++ag+
    EHU00250.1 115 QQGTGKEIARSRLRPGDLVLFRAGS 139
                   6789999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1358.61
//
Query:       EHU00251.1  [L=265]
Description: hypothetical protein CKS_2156 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-25   88.0   0.4      7e-25   87.7   0.4    1.2  1  CSS-motif  CSS motif domain associated with EAL


Domain annotation for each model (and alignments):
>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.4   3.9e-29     7e-25      25     205 ..      69     242 ..      41     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 3.9e-29
   CSS-motif  25 qaldelqplagrpCseahlaaLrrivafspyvrdiglvkdgrlyCSSlwGeldlplpllppdltsrdgvrlwllrgtplvpdrpalvlrrgnyavvisp 123
                 ++l  l+pl+ ++C  ++  +L+ ++af+  +r+i+lvkdg+ +CSS++G++ +pl+ l+p ++     +++ll+gtp++p++pal+++  ++++ +s 
  EHU00251.1  69 DTLIPLLPLVKSECYIVN-HELTARAAFAGDIRAIILVKDGNAFCSSATGSFFQPLSALSPRTDPTRERDIRLLPGTPMQPTKPALAIWIKQPGTQQS- 165
                 5677899********888.*******************************************99999999*************************999. PP

   CSS-motif 124 gv..fidgqylpelllavsssdgeqlalvvgpaall.ldgrvlslaeliasearssgalyvrakserypltvvvyappasllarw 205
                 g+  ++++++ p+ l a s ++++++al+++++al+ +  + l+ ++li+s+         ++  ++ p++ ++y+++ s+ ++ 
  EHU00251.1 166 GLfvTLNVSLSPYQLKASSHPKITGIALLAHNTALTsW-QPTLVRNHLIPSPLM-------QTPMDGLPFQFALYGSTLSASDYQ 242
                 888999******************************65.566667999999999.......9***************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1945.19
//
Query:       EHU00252.1  [L=251]
Description: hypothetical protein CKS_2155 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-56  192.1   0.0    1.2e-56  192.0   0.0    1.0  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.0   6.5e-61   1.2e-56       8     238 .]       3     231 ..       1     231 [. 0.96

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 6.5e-61
                 CCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCH.TT--EEEEEE--CHHCC-CCHHHH CS
         EAL   8 lenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeq.ldadiklsinlspasladeeflee 105
                 ++++e++++yQP++ +++++ +g+eallrw hp g+ isp+ f+++ae ++ +  l+r+++e + +d++ l+ + l++++ +s+n+sp +l   +f ++
  EHU00252.1   3 IRRGEFHVEYQPIITAADRQSYGIEALLRWTHPSGEAISPDIFISYAEAQNQIIPLTRHLFELVARDAHLLR-HtLPKGTCISLNISPLHLGACSFRDD 100
                 789***************************************************************999995.668999999***************** PP

                 HHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCC CS
         EAL 106 lrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakel 204
                 ++ + ++ + ++ + v+eite++++ ++++++ ++++ L+++Gi+ia+ddfgtg+s+l yl ++ +d++K+dr +++ + ++  +  +++ +++l+k+l
  EHU00252.1 101 VLYWQDSMPHDHFQYVFEITERAVV-ENSNAA-ALFNWLHQRGIKIAVDDFGTGHSALIYLEKYAFDYLKIDRGFVQSIGTETITSPVLDTVLQLSKKL 197
                 **9999999*************874.555555.8***************************************************************** PP

                 T-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 205 gikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 +++ vaegVet+eq+++l++ g++ +Q yl+s+p
  EHU00252.1 198 NLMSVAEGVETDEQASWLINRGVTHLQSYLFSRP 231
                 ********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1940.58
//
Query:       EHU00253.1  [L=602]
Description: putative periplasmic substrate-binding component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-72  242.7   3.8      8e-72  242.3   3.8    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   3.8   4.4e-76     8e-72       2     371 ..      99     503 ..      98     509 .. 0.93

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 4.4e-76
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTT.TTTHCHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnal.fltllaavpas 99 
                 ++p +Aes+    +D +  +++L++ ++F+DG+++tAeDv+f+f  ++  + ++ + ++      ++++eav+ +tvr+tl++p+ + +l+ll+ + +s
  EHU00253.1  99 YYPLIAESA-RHPADFRWMEITLNPRARFHDGSAITAEDVAFTFHTFMTEGVPQFRLYYR-----GVTMEAVNRLTVRITLPAPDKDlMLSLLSLPVIS 191
                 79******5.99***********************************************9.....8******************996255555555555 PP

                 HGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTST......TTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHH CS
   SBP_bac_5 100 iakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYw......gggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkea 192
                        ++++++++  ++p ++GPY++ ++k gq i++ r +dYw      ++g+ ++d  ++ ++ d++++ +a+++G  d  +e +++ +++++  
  EHU00253.1 192 HT---FWQNKKFNEPLSQPPLSSGPYRISRWKLGQFIEYSRVKDYWaadlpvNRGRFNFDVMRYDYYLDDNVAFEAFKAGAFDLREETSAKKWATQYRG 287
                 55...6899999**********************************99999888999***************************************999 PP

                 TTEEE.......EEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH............... CS
   SBP_bac_5 193 kglkv.......lyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka............... 269
                  + +        + ++++  +  la+N++kp f+d rvRqA+++A+D+e+++k++++   +++ s+++++ ++a++ ++ a +                
  EHU00253.1 288 RHFDDqqivkesMPNTASIDTRWLALNNQKPLFQDRRVRQAMALAFDFEWMNKTLFYHAFKRTSSYFQNTKYAAQGQPDAAQQRlltpfraqlppdift 386
                 999888999999*********************************************************999999999988766*************** PP

                 ...............SHHHHHHHHHHHTT-BCSSTSCEETC.EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEE CS
   SBP_bac_5 270 ...............ydpekAkklLkeaGykdgdggglrek.klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmil 352
                                 ++ kA+ lL++aG+  ++++++++k ++++t +l   + +++++a  +q +l ++Gi+++++++d+ ++yl r ++gd+dm+ 
  EHU00253.1 387 dawapptthgsgydrTNLLKAMSLLNQAGWHVKNQRLVNDKnGKPFTAELLLPGGTNSEWALPYQHNLSRLGITLTLRQIDS-SQYLRRLRSGDYDMVS 484
                 ************77777*****************************************************************.**************** PP

                 EEEECTTSTTHHHHHHHHS CS
   SBP_bac_5 353 lgwgadypdpdnflnpfls 371
                 + + a + +  n   ++ s
  EHU00253.1 485 TVYLAMPTPSRNLQASWQS 503
                 *999886666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4445.12
//
Query:       EHU00254.1  [L=364]
Description: putative membrane component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-36  125.6  13.6    1.8e-36  125.6  13.6    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.075   1.3e+03      25      41 ..       8      24 ..       2      62 .. 0.67
   2 !  125.6  13.6     1e-40   1.8e-36       2     183 ..     152     359 ..     151     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.075
  BPD_transp_1 25 ivllslPsfvlaillvl 41
                   +ll +P+++ +i l +
    EHU00254.1  8 RLLLIIPTLWAIITLNF 24
                  56778888883333332 PP

  == domain 2  score: 125.6 bits;  conditional E-value: 1e-40
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf..........................vilsilghlilpviillllsaapyvrlir 72 
                   i+lGi  a++ ++++d +++++ii+++s+P f+++i+l+++f                          ++ ++l+h +lpv+++++ ++a +++l+ 
    EHU00254.1 152 IPLGIKKAVRNGSPFDIWSSTFIIIGYSVPAFLFGIMLIVLFaggsyfdwfplrgltspqfatlpwygKVGDYLWHIALPVLATVIGGFATLTMLTK 248
                   89******************************************************************9999************************* PP

  BPD_transp_1  73 raalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggl.lggavlleflgswpGlgtllleailgydyseisnggvlalviavlll 168
                   +a+l+++ k +v +ara+G+s+++i++++v++na+  +i++++ +f+++ ++ +vl+e ++s +Glg+l ++a+ ++dy+ +  g++++++++ ll+
    EHU00254.1 249 NAFLDEIRKHYVVTARAKGVSERRILYHHVFRNAMLLVIASFPATFISMfFTSSVLIEVMFSLNGLGLLGFDATVQRDYPVMF-GTLYIFTLIGLLM 344
                   *************************************************89999*****************************.************* PP

  BPD_transp_1 169 nlvadilqrlldprv 183
                   n+++d+ ++l+dpr+
    EHU00254.1 345 NILSDLTYTLVDPRI 359
                   **************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2744.41
//
Query:       EHU00255.1  [L=340]
Description: putative membrane component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-27   96.3  12.4    1.8e-27   96.3  12.4    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
    3.4e-07   30.1   0.9    3.4e-07   30.1   0.9    4.2  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.44     4e+03      95     102 ..      11      18 ..       9      40 .. 0.52
   2 !   96.3  12.4     2e-31   1.8e-27       1     182 [.     157     337 ..     157     340 .] 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.44
  BPD_transp_1  95 wqifrkvv 102
                   wq+fr+++
    EHU00255.1  11 WQRFRHHR 18 
                   55555443 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 2e-31
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   gi++G++ + ++++++d + ++l++v++++Ps+ l+ill       s+++ ++++ +++++l++++ +v ++r+++lr+++ d+++aa alG++  +
    EHU00255.1 157 GIVIGAIQG-YFGGRTDLIGQRLTEVWSGMPSLFLLILLS------SVVQPSFWWlLLVTVLFGWMSLVSVVRAEFLRTRNFDYIRAAQALGVNAAR 246
                   89*******.******************************......****777776***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   i+ +++lPna+  ++t+l++ + g+++  + l flg + +     lg lll+  ++ + ++    g+++l+i++ ll+++  ++ +++dp 
    EHU00255.1 247 IMLRHMLPNAMVATLTFLPFILCGSITTLTSLDFLGFGLPigspsLGELLLQGKNNLQAPWLGLSGFFTLAILLSLLIFIGEAVRDAFDPS 337
                   ***********************************9332244445666666666666666655**************************97 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.9   3.8e-11   3.4e-07       4      44 ..       8      50 ..       4      80 .. 0.85
   2 ?   -1.0   0.3       0.2   1.8e+03      18      36 ..     141     160 ..     140     178 .. 0.64
   3 ?   -0.3   0.9      0.13   1.1e+03      23      36 ..     189     202 ..     185     226 .. 0.84
   4 ?   -1.3   0.9      0.24   2.2e+03      19      32 ..     312     325 ..     308     333 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.8e-11
      OppC_N  4 qdawrrFkrNklAvvglvilllllliaifaPliaPydp..qdl 44
                q+ w+rF+ +++   +l+i+l+++++++ a+l+a+ +p   ++
  EHU00255.1  8 QQRWQRFRHHRRGYWSLWIFLFIFVLSLCAELVANDKPllVHY 50
                899******************************9766666333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.2
      OppC_N  18 vglvillllllia.ifaPli 36 
                 ++l + lll+l++ +++ +i
  EHU00255.1 141 ISLLFGLLLTLFSsVIGIVI 160
                 56667777777643555444 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.13
      OppC_N  23 lllllliaifaPli 36 
                 +ll+ll ++++P +
  EHU00255.1 189 FLLILLSSVVQPSF 202
                 67788888888876 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.24
      OppC_N  19 glvilllllliaif 32 
                 g++ l++ll + if
  EHU00255.1 312 GFFTLAILLSLLIF 325
                 66666665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2475.48
//
Query:       EHU00256.1  [L=534]
Description: ATP-binding component of an ABC superfamily oligopeptide/dipeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-60  201.4   0.0    3.1e-30  105.5   0.0    2.3  2  ABC_tran         ABC transporter
    5.3e-12   46.2   3.2    9.6e-05   22.3   0.1    4.0  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.8e-11   43.9   0.6    0.00017   21.1   0.5    3.0  2  SMC_N            RecF/RecN/SMC N terminal domain
    3.1e-08   34.0   0.0      0.013   16.0   0.0    2.5  2  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    5.4e-07   30.2   7.4     0.0037   17.7   0.7    2.9  2  AAA_16           AAA ATPase domain
    7.1e-07   29.6   6.1      0.028   14.7   0.2    3.7  2  AAA_22           AAA domain
    1.5e-06   28.0   0.3      0.016   14.8   0.1    2.6  2  AAA_25           AAA domain
    4.3e-06   26.4   0.2      0.072   12.8   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
    0.00032   20.3   0.1      0.081   12.4   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
    0.00088   18.7   3.8        1.3    8.3   0.2    4.1  4  TniB             Bacterial TniB protein
    0.00088   18.0   0.0        0.4    9.3   0.0    2.1  2  AAA_13           AAA domain
     0.0015   18.7   0.3        1.1    9.6   0.0    3.7  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0019   17.9   2.6        1.4    8.6   0.0    3.8  4  IstB_IS21        IstB-like ATP binding protein
     0.0025   18.0   0.5        1.9    8.5   0.1    2.4  2  DUF87            Helicase HerA, central domain
     0.0025   17.8   1.7        1.9    8.5   0.0    2.9  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0044   17.1   2.5        2.3    8.3   0.5    2.7  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0045   16.4   0.2        2.9    7.2   0.0    2.5  2  AIG1             AIG1 family
     0.0045   16.2   0.0        1.8    7.7   0.0    2.1  2  G-alpha          G-protein alpha subunit
     0.0083   16.1   0.3        5.9    6.9   0.0    3.3  3  ResIII           Type III restriction enzyme, res subunit
     0.0093   15.9   1.4        2.7    7.9   0.2    2.4  2  RsgA_GTPase      RsgA GTPase
     0.0096   15.4   1.0        2.2    7.7   0.0    2.6  3  Pox_A32          Poxvirus A32 protein
     0.0097   16.3   0.6        7.4    7.0   0.0    3.5  3  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.036   13.8   3.1        8.7    6.0   0.2    3.6  2  AAA_30           AAA domain
      0.042   12.8   0.2        2.9    6.7   0.0    2.8  3  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.045   13.5   0.2        9.4    5.9   0.0    2.4  2  AAA_24           AAA domain
      0.058   13.6   3.1        6.9    6.8   0.0    3.6  3  AAA_33           AAA domain
      0.065   13.1   0.5        5.6    6.8   0.0    2.5  2  APS_kinase       Adenylylsulphate kinase
       0.07   12.5   0.1        2.7    7.3   0.0    2.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.13   12.8   0.0         15    6.1   0.0    3.4  4  AAA_18           AAA domain
       0.14   12.5   0.0         20    5.6   0.0    2.5  2  RNA_helicase     RNA helicase
       0.15   11.7   0.0       0.15   11.7   0.0    3.1  4  Sigma54_activat  Sigma-54 interaction domain
       0.29   11.0   8.5        1.7    8.6   0.0    3.8  3  NACHT            NACHT domain
        1.9    8.0   4.8        8.7    5.8   0.1    2.7  2  Hpr_kinase_C     HPr Serine kinase C-terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   2.2e-29   1.2e-26       1     136 [.      25     184 ..      25     185 .. 0.91
   2 !  105.5   0.0   5.7e-33   3.1e-30       2     137 .]     303     454 ..     302     454 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 2.2e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx......... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren......... 79 
                 +k+vsl +++ge++a+vGe+G+GKS  +  +++ll+       +Geil+ g++l +    + +    +++++++qe   +l+p ++++++         
  EHU00256.1  25 VKDVSLCVEAGETLALVGESGSGKSVTALSVMRLLHEaavvyPQGEILFAGENLLTaseqRLRGLRGNQMAMIFQEpmVSLNPLHSIEKQlyevlslhh 123
                 589**********************999988888888799999**********9996663344445689*******99999****99999********* PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      ++++ei + l+++g+ + +++++++ p++LSgG++qrv++a+all++pkll++DEpt
  EHU00256.1 124 glrreAARAEIIRCLDRVGIRQ-PASRLNDFPHQLSGGERQRVMIAMALLTQPKLLIADEPT 184
                 **99888999*********999.888889999*****************************9 PP

  == domain 2  score: 105.5 bits;  conditional E-value: 5.7e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...............x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...............e 80 
                 + +s+ lk+ge +++vGe+G+GKSt   +l++l   ++Ge+++d ++l++   ++l  lr++i+v++q+  + l+p++tv +                +
  EHU00256.1 303 NSISFRLKRGESLGLVGESGSGKSTTGLALLRLIA-AQGEVWFDHQPLHQlsrKQLLPLRRRIQVVFQDpnSALNPRMTVLQIiaeglavhfpqlsaaQ 400
                 789******************************86.8*************988899999**********9889*******999************9999 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++e++ ++++++gl+    +   + p+++SgGq+qr+a+aral+ +p+ll+lDEpt+
  EHU00256.1 401 QEERVIAVMAEVGLDTESRH---RYPAEFSGGQRQRIAIARALILEPELLVLDEPTS 454
                 99999999999999884444...469*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.92     5e+02       3      13 ..      39      49 ..      38      86 .. 0.83
   2 !   15.6   0.3     2e-05     0.011     235     302 ..     155     220 ..      97     221 .. 0.87
   3 ?    5.4   0.0     0.026        14       3      24 ..     316     337 ..     314     378 .. 0.84
   4 !   22.3   0.1   1.8e-07   9.6e-05     233     302 ..     422     489 ..     393     490 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.92
      AAA_21  3 vliGpNgsGKS 13
                +l+G  gsGKS
  EHU00256.1 39 ALVGESGSGKS 49
                69********9 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2e-05
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++lS G ++   ++ all ++   +ll+ DEp + L+  +++ +l+ll+el++  +   ++ TH+  ++
  EHU00256.1 155 HQLSGGERQRVMIAMALLTQP---KLLIADEPTTALDVTVQAQILTLLRELQQeLNMGMLFITHNLNIV 220
                 678999999966666777666...89**********************99999899999*****99886 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.026
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 +l+G  gsGKS+   al  l  
  EHU00256.1 316 GLVGESGSGKSTTGLALLRLIA 337
                 69***********999988854 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 1.8e-07
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                  ++e+S G+++ +a++ al+  +    ll++DEp ++L+ ++++ +l+ll+ l++ +    ++ +H+ +++
  EHU00256.1 422 YPAEFSGGQRQRIAIARALILEP---ELLVLDEPTSSLDRSVQKQILDLLRGLQQqRQLSYVFISHDLEVV 489
                 57799*******99999999888...9***********************66666345555******9876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.5   3.1e-07   0.00017      28     213 ..      39     231 ..      25     238 .. 0.74
   2 !   18.8   0.0   1.5e-06   0.00084      28     205 ..     316     492 ..     302     506 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.1e-07
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC...CCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrsekl...sdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                 a+vG+ GSGKs    +++ +L e++    + e l   ++l+++ +++ + +   +++++f+++  +    ++  si++++++  + ++ +  +e+ ++e
  EHU00256.1  39 ALVGESGSGKSVTALSVMRLLHEAAVVYPQGEILfagENLLTAsEQRLRGLRGNQMAMIFQEPMVS---LNPLHSIEKQLYEVLSLHHGLR-REAARAE 133
                 677777777777777777777766554444443333356666633444555666677777776666...5666777777777777666665.4566788 PP

                 HHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvg 210
                 + + l ++gi +          +LSgGe++ v++a+ + +    +  l + De   aLD +  +++ +ll+e +++  + ++ i+++ +++++   +v 
  EHU00256.1 134 IIRCLDRVGIRQPasrlndfphQLSGGERQRVMIAMALLT----QPKLLIADEPTTALDVTVQAQILTLLRELQQElnMGMLFITHNLNIVRQLADNVS 228
                 9999999999988999999999*******99998887533....3458899********************8887644889**********99988888 PP

                 EEE CS
                 xxx RF
       SMC_N 211 vtk 213
                 v+ 
  EHU00256.1 229 VMR 231
                 876 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.5e-06
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                  +vG+ GSGKs    A+l ++  +    + ++ l++l  k   +    + +++++f++++++    ++++++ + + ++   ++       +++ v  +
  EHU00256.1 316 GLVGESGSGKSTTGLALLRLIAAQGEVWFDHQPLHQLSRK---QLLPLRRRIQVVFQDPNSA---LNPRMTVLQIIAEGLAVHFPQLSAAQQEERVIAV 408
                 589**************99999999988988888888665...7888999**********99...6777777766666666555555555566889999 PP

                 HHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE..EEEE-SSHHHCCC- CS
                 xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       SMC_N 127 lesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ..fivislreemleka 205
                 ++++g++ e       ++SgG+++ +a+a  + +   +p  l +lDe  + LD +  k++ +ll+  +++ Q  ++ is++ e+++  
  EHU00256.1 409 MAEVGLDTEsrhrypaEFSGGQRQRIAIARALIL---EP-ELLVLDEPTSSLDRSVQKQILDLLRGLQQQRQlsYVFISHDLEVVRSL 492
                 ******9999999999********9999866433...44.4899*********************77777662257788887777654 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.4e-05     0.013       1      29 [.     236     264 ..     236     273 .. 0.91
   2 !   15.4   0.0   3.8e-05     0.021       1      25 [.     505     529 ..     505     533 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-05
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprld 29 
                 vE  +s+ l+++p+H YT+ Ll++ p+ +
  EHU00256.1 236 VEHNRSAVLLRQPQHAYTQQLLAANPEGR 264
                 8999999*****************99976 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 3.8e-05
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsv 25 
                 vE+g++++lf  p+  YT+ Llrsv
  EHU00256.1 505 VEQGDCETLFAAPQQAYTRELLRSV 529
                 8**********************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.0   3.9e-05     0.021      11      58 ..      20      67 ..      16     213 .. 0.62
   2 !   17.7   0.7   6.8e-06    0.0037      23     163 ..     311     472 ..     302     496 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.9e-05
      AAA_16 11 qLlsalervrsgrp..elvllsGesGvGKsslvrellralekdggiflrg 58
                qL++++++v+   +  e + l+GesG+GKs  + +++r l ++ +++ + 
  EHU00256.1 20 QLHQVVKDVSLCVEagETLALVGESGSGKSVTALSVMRLLHEA-AVV-YP 67
                556666633332223389*******************988877.222.22 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 6.8e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala....avpelagaea 116
                 r+e++ l+GesG+GKs+   +llr + ++g ++f  +  +ql+++       q+l  ++ ++ + ++++s +l++  + l+  ++      p+l++a+ 
  EHU00256.1 311 RGESLGLVGESGSGKSTTGLALLRLIAAQGeVWFDHQPLHQLSRK-------QLLPLRRRIQVVFQDPNS-ALNPRMTVLQIIAEglavHFPQLSAAQQ 401
                 458899******************999996577766666666444.......333333334434433333.3333333333333344453333333333 PP

      AAA_16 117 .srllellkrllallsrder......................plvlvlDdlq.wadeaslqllaaLlrlle 163
                  +r+ +++++    +++++r                      p +lvlD+    +d + ++ +  Llr l+
  EHU00256.1 402 eERVIAVMAEVGLDTESRHRypaefsggqrqriaiaralilePELLVLDEPTsSLDRSVQKQILDLLRGLQ 472
                 33333333333322222122233333333333333333333345677776553444444444333333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.4   0.00015     0.084       8      34 ..      38      64 ..      33     223 .. 0.60
   2 !   14.7   0.2   5.1e-05     0.028       6     128 ..     313     482 ..     308     490 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00015
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeak 34
                l+++GesG+GK++++  +++ l+e+a 
  EHU00256.1 38 LALVGESGSGKSVTALSVMRLLHEAAV 64
                799*****************9986543 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.1e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee....................erpevvfvtlpsst..sskdllrellralglelka............ 70 
                  +l ++GesG+GK+t+   ll+   ++                         +r+ +v ++ p+s    + ++l+ +++ l +                
  EHU00256.1 313 ESLGLVGESGSGKSTTGLALLRLIAAQ----GevwfdhqplhqlsrkqllplRRRIQVVFQDPNSAlnPRMTVLQIIAEGLAVHFPQlsaaqqeervia 407
                 566799*********988888876322....13456777799999999999955555555555555555555577777777754444774555555555 PP

      AAA_22  71 ..........erlsseellealeqalrarav........................ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                           +                   +                        +ell++DE    l+   ++++l  Lr l+   + +++ +++
  EHU00256.1 408 vmaevgldteS-------------------RhrypaefsggqrqriaiaralilePELLVLDEPTSsLDrsvQKQILDLLRGLQQ--QRQLSYVFI 482
                 55554443331...................2444444444444444455566899999999999888887444888888898888..888888776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00055       0.3      29      54 ..      31      56 ..       5      76 .. 0.84
   2 !   14.8   0.1   2.9e-05     0.016      30      66 ..     309     353 ..     305     463 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00055
      AAA_25 29 llpagelallaGapgtGKttlaldla 54
                ++ age+ +l+G +g+GK++ al+++
  EHU00256.1 31 CVEAGETLALVGESGSGKSVTALSVM 56
                7899******************9976 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.9e-05
      AAA_25  30 lpagelallaGapgtGKttlaldlalava.tGkpwlg.......p 66 
                 l +ge   l+G +g+GK+t  l l   +a +G+ w++       +
  EHU00256.1 309 LKRGESLGLVGESGSGKSTTGLALLRLIAaQGEVWFDhqplhqlS 353
                 57889999********************99******977444331 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00052      0.28      19      37 ..      32      50 ..      23      66 .. 0.76
   2 !   12.8   0.1   0.00013     0.072      17      45 ..     307     335 ..     301     345 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00052
      AAA_29 19 idlkgatlltGpsGsGKST 37
                ++  ++  l+G+sGsGKS 
  EHU00256.1 32 VEAGETLALVGESGSGKSV 50
                55444889**********6 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_29  17 ieidlkgatlltGpsGsGKSTllDAiqal 45 
                 +++++ ++  l+G+sGsGKST   A+  l
  EHU00256.1 307 FRLKRGESLGLVGESGSGKSTTGLALLRL 335
                 45554447889**********65555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00015     0.081      27      60 ..      29      62 ..      23      68 .. 0.88
   2 ?    5.1   0.0     0.027        15      30      55 ..     309     334 ..     296     348 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkldke 60
                +l+++++  + lvG++G+GK+v++ ++++ l++ 
  EHU00256.1 29 SLCVEAGETLALVGESGSGKSVTALSVMRLLHEA 62
                6789999*******************99988854 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.027
       AAA_7  30 lknkkpvllvGptGtGKtviikdllk 55 
                 lk++ ++ lvG++G+GK+++   ll+
  EHU00256.1 309 LKRGESLGLVGESGSGKSTTGLALLR 334
                 67888899**********98766665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.57   3.1e+02      37      52 ..      37      52 ..      12      63 .. 0.78
   2 !    8.3   0.2    0.0025       1.3     114     158 ..     169     211 ..     152     225 .. 0.81
   3 ?    0.3   0.0      0.75   4.1e+02      33      50 ..     310     327 ..     306     332 .. 0.87
   4 ?    6.3   0.1      0.01       5.6     118     160 ..     442     482 ..     397     490 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.57
        TniB 37 nlllvGdsnnGKtmiv 52
                 l lvG+s  GK++ +
  EHU00256.1 37 TLALVGESGSGKSVTA 52
                789*********9865 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0025
        TniB 114 llrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipiv 158
                 +   +++++Li DE   +l   ++ q ++l +l+ L++el++ + 
  EHU00256.1 169 MALLTQPKLLIADEPTTAL--DVTVQAQILTLLRELQQELNMGML 211
                 4445689**********99..6677888************98875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.75
        TniB  33 krmpnlllvGdsnnGKtm 50 
                 kr ++l lvG+s  GK++
  EHU00256.1 310 KRGESLGLVGESGSGKST 327
                 5778999*********98 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.01
        TniB 118 lkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 l++++L++DE  + l   ++ q+++l +l+ L+++ +++ v +
  EHU00256.1 442 LEPELLVLDEPTSSL--DRSVQKQILDLLRGLQQQRQLSYVFI 482
                 6789*********99..7788999************9999975 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00074       0.4     526     587 ..     174     233 ..     163     261 .. 0.76
   2 !    6.5   0.0    0.0049       2.7     525     576 ..     442     491 ..     433     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00074
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkntkrkrkk 587
                 + k  + D P   LD +++  + +l+++   ++ ++  lfi THnl+  +++ +n++  r++
  EHU00256.1 174 QPKLLIADEPTTALDVTVQAQILTLLRELQ-QELNMGMLFI-THNLNIVRQLADNVSVMRAG 233
                 6778899**********************7.8999999998.************99863332 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0049
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffke 576
                  + +  v+D P SSLD  ++  +  l++    ++ + + +fi+ H le  + 
  EHU00256.1 442 LEPELLVLDEPTSSLDRSVQKQILDLLRGLQ-QQRQLSYVFIS-HDLEVVRS 491
                 577889***********************97.99999999997.87777665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.096        52      31      87 ..     155     198 ..     138     201 .. 0.58
   2 !    9.6   0.0    0.0019       1.1      63      89 ..     443     469 ..     404     470 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.096
     SbcCD_C  31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllel 87 
                  +lSGGe+q ++   +a+al    +       +++l++ DE    lD + +a++l l
  EHU00256.1 155 HQLSGGERQRVM---IAMALL---T-------QPKLLIADEPTTALDVTVQAQILTL 198
                 678999985433...232222...2.......2445555555555555555555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0019
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                  ++l++LDE  s+lD   ++++l+ll+
  EHU00256.1 443 EPELLVLDEPTSSLDRSVQKQILDLLR 469
                 489*********************997 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0026       1.4      44      84 ..      32      70 ..       9     120 .. 0.79
   2 ?   -0.0   0.1       1.2   6.4e+02      98     150 ..     164     218 ..     148     224 .. 0.66
   3 ?    5.5   0.0     0.023        13      40      69 ..     304     334 ..     275     356 .. 0.73
   4 ?   -0.3   0.1       1.4   7.7e+02      99     139 ..     434     473 ..     428     487 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0026
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgveavraglsvlfvrve 84
                +e+ e ++l+G sG GKs    al+v    ++ +v++ + e
  EHU00256.1 32 VEAGETLALVGESGSGKSVT--ALSVMRLLHEAAVVYPQGE 70
                7899**************75..5555666666666666555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.2
   IstB_IS21  98 klaralkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnlp 150
                 ++  a++ l++++lli D+   +l    qa+  +l++ +++  +   + it nl+
  EHU00256.1 164 RVMIAMALLTQPKLLIADEptTALDVTVQAQILTLLRELQQELNMGMLFITHNLN 218
                 556677889999******9322334444555566666666777777777777765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.023
   IstB_IS21  40 tlsf.iekkenivllGpsGvGKshlaialgv 69 
                 + sf +++ e++ l+G sG GKs    al +
  EHU00256.1 304 SISFrLKRGESLGLVGESGSGKSTTGLALLR 334
                 4555468899*************98888854 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1.4
   IstB_IS21  99 laralkrllkvdllilDdlgllpldqaeaellfeviekrye 139
                 +a a + +l+++ll+lD+  +  ld+  ++++++++    +
  EHU00256.1 434 IAIARALILEPELLVLDEP-TSSLDRSVQKQILDLLRGLQQ 473
                 555556678899*****96.567888888888888766555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0091         5      26      47 ..      38      59 ..      25      72 .. 0.80
   2 !    8.5   0.1    0.0035       1.9      25      48 ..     314     337 ..     303     345 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0091
       DUF87 26 lAilgsTGsGKSntvavLleel 47
                lA +g++GsGKS t+ + ++ l
  EHU00256.1 38 LALVGESGSGKSVTALSVMRLL 59
                799**********987666555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0035
       DUF87  25 HlAilgsTGsGKSntvavLleell 48 
                 +l+ +g++GsGKS+t   Ll+ ++
  EHU00256.1 314 SLGLVGESGSGKSTTGLALLRLIA 337
                 6899***********999998876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0036       1.9       3      30 ..      39      67 ..      37      79 .. 0.86
   2 !    7.4   0.1    0.0078       4.2       4      24 ..     317     339 ..     314     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0036
                EEE--SSSSHHHHHHHGGGGB.S--EEEE CS
       AAA_5  3 lLvGppGtgKselaerlaaal.nreveyv 30
                 LvG++G+gKs  a ++ ++l ++ v+y 
  EHU00256.1 39 ALVGESGSGKSVTALSVMRLLhEAAVVYP 67
                69*****************9976666665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0078
                 EE--SSSSHHHHHHHGGGGB..S CS
       AAA_5   4 LvGppGtgKselaerlaaal..n 24 
                 LvG++G+gKs+    l++++  +
  EHU00256.1 317 LVGESGSGKSTTGLALLRLIaaQ 339
                 9**************99999653 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0054         3       6      25 ..      42      61 ..      38      66 .. 0.88
   2 !    8.3   0.5    0.0042       2.3       6      27 ..     319     340 ..     317     480 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0054
                SSTTSSHHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralar 25
                + +G+GK+++a++ +r+l +
  EHU00256.1 42 GESGSGKSVTALSVMRLLHE 61
                78***************987 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0042
                 SSTTSSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrg 27 
                 + +G+GK+t+ ++L+r++a +g
  EHU00256.1 319 GESGSGKSTTGLALLRLIAAQG 340
                 679****************977 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0053       2.9       2      22 ..      37      57 ..      36      63 .. 0.89
   2 !    6.8   0.0    0.0069       3.7       5      22 ..     317     334 ..     313     347 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0053
                EEEEESSTTSSHHHHHHHHHT CS
        AIG1  2 tivlvGktgnGkSaTgNsilg 22
                t+ lvG +g+GkS T+ s+++
  EHU00256.1 37 TLALVGESGSGKSVTALSVMR 57
                788************999865 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0069
                 EESSTTSSHHHHHHHHHT CS
        AIG1   5 lvGktgnGkSaTgNsilg 22 
                 lvG +g+GkS+Tg ++l+
  EHU00256.1 317 LVGESGSGKSTTGLALLR 334
                 9************88876 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0032       1.8      25     112 ..      37     119 ..      17     177 .. 0.79
   2 !    6.7   0.0    0.0066       3.6      22      54 ..     311     347 ..     293     486 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0032
                 EEEEEESTTSSHH.HHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS-HCHHHH... CS
     G-alpha  25 kllllGqseSGKs.Tilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldplkkveasliakl 112
                 +l l+G+s+SGKs T l  ++ll++ ++   + ++   +  +n++++ ++ l+ l+  +  +      qe   +l+pl ++e++l++ l
  EHU00256.1  37 TLALVGESGSGKSvTALSVMRLLHEAAVVYPQGEI--LFAGENLLTASEQRLRGLRGNQMAM----IFQEPMVSLNPLHSIEKQLYEVL 119
                 689**********677999*****98855553344..4567888888888888888855555....57777788888888888877655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0066
                 .EEEEEEEESTTSSHHHH.HHHHHHHCS--...--HH CS
     G-alpha  22 revkllllGqseSGKsTi.lkqlkllykkg...fsee 54 
                 r  +l l+G+s+SGKsT+ l  l+l+  +g   f+++
  EHU00256.1 311 RGESLGLVGESGSGKSTTgLALLRLIAAQGevwFDHQ 347
                 4557889**********96777777776666665555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.011       5.9      25      51 ..      36      62 ..      14      81 .. 0.81
   2 ?    2.9   0.1      0.18     1e+02      46      79 ..     200     232 ..     190     261 .. 0.72
   3 ?    2.2   0.0       0.3   1.6e+02       9      51 ..     299     339 ..     289     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
                SEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII 25 krglikmaTGtGKTlvaaklierllkk 51
                + + ++ + G+GK+++a+++++ l+++
  EHU00256.1 36 ETLALVGESGSGKSVTALSVMRLLHEA 62
                556688899***************986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
                 HHH-S........-EEEEESSHHHHHHHHHHGGGGTG CS
      ResIII  46 erllkkgkee...kflflvprkslleqtleefkkfls 79 
                 ++l++    e    +lf+ ++++++ q+ ++++ +  
  EHU00256.1 200 RELQQ----ElnmGMLFITHNLNIVRQLADNVSVMRA 232
                 33333....234489**************99866554 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.3
                 HHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII   9 eeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkk 51 
                 + a++++   l  kr + + ++ + G+GK+ + ++l + ++ +
  EHU00256.1 299 KIAVNSISFRL--KRGESLGLVGESGSGKSTTGLALLRLIAAQ 339
                 55666776666..4778888999*********99998877665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.013       7.1      91     113 ..      26      49 ..       8      64 .. 0.76
   2 !    7.9   0.2     0.005       2.7      85     114 ..     297     327 ..     287     342 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
                  HHHHHHCTT.SEEEEECSTTSSHH CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKS 113
                  ++++  ++  +t +lvG+SG GKS
   EHU00256.1  26 KDVSLCVEAgETLALVGESGSGKS 49 
                  455555555599***********9 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.005
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHH CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKSt 114
                   +k ++++++ +lk  +   lvG+SG GKSt
   EHU00256.1 297 GEKIAVNSISFRLKRgESLGLVGESGSGKST 327
                  45667889999999879999**********9 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0041       2.2      15      37 ..      37      59 ..      29      64 .. 0.87
   2 ?    5.5   0.1     0.019        10      16      38 ..     315     337 ..     306     346 .. 0.86
   3 ?   -3.3   0.0       9.1     5e+03     122     161 ..     470     509 ..     446     530 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0041
     Pox_A32 15 rlalvGgsGsGktvyLlsLlrtl 37
                 lalvG+sGsGk v  ls++r l
  EHU00256.1 37 TLALVGESGSGKSVTALSVMRLL 59
                589***********999999876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.019
     Pox_A32  16 lalvGgsGsGktvyLlsLlrtlv 38 
                 l lvG+sGsGk +  l+Llr + 
  EHU00256.1 315 LGLVGESGSGKSTTGLALLRLIA 337
                 779**********9999998765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.1
     Pox_A32 122 nvgRhlnvsiilLcqtykhvpvngrasithlvcinvsssd 161
                       ++s +++ + ++ v + +++ i       v++ d
  EHU00256.1 470 GLQQQRQLSYVFISHDLEVVRSLCHQLIVLRQGEVVEQGD 509
                 3444455666666666666666666666555555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.014       7.4       2      47 ..      39      87 ..      38     114 .. 0.67
   2 ?   -2.1   0.1       9.1   4.9e+03      83     111 ..     189     216 ..     178     237 .. 0.72
   3 ?    4.6   0.0     0.073        40       3      98 ..     317     473 ..     315     496 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.014
                EEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCS..SSSTTHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakelg.vefleisgsell..skyvgesekkir 47
                 l+G  G GK+ +a +v++ l+ + ++  +g  l+  ++++ +se+++r
  EHU00256.1 39 ALVGESGSGKSVTALSVMRLLHeAAVVYPQGEILFagENLLTASEQRLR 87
                599****************996344444343333332224444444444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.1
                 HHHHHHHHHHHHHTTTSSSTEEEEEEESS CS
         AAA  83 ervvnqLlteldgvkkkeskvivigatnr 111
                  +v++q+lt l +++++ + + ++ +t++
  EHU00256.1 189 VTVQAQILTLLRELQQELN-MGMLFITHN 216
                 5788899999999888755.555555555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.073
                 EESSTTSSHHHHHHHHHHHH.........THEEEEEETTTCSSS....................................................... CS
         AAA   3 lyGppGtGKTllakavakel.........gvefleisgsellsk....................................................... 37 
                 l+G  G GK+++  a+ + +         ++++ ++s ++ll                                                         
  EHU00256.1 317 LVGESGSGKSTTGLALLRLIaaqgevwfdHQPLHQLSRKQLLPLrrriqvvfqdpnsalnprmtvlqiiaeglavhfpqlsaaqqeerviavmaevgld 415
                 677777777777777766653333222222445555555544112333333333333333333333333333333344444444444455555556656 PP

                 ......STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  38 ......yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                       y  e +   r+ ++ a++   +p  l++DE  +   ++          v++q+l  l g+++
  EHU00256.1 416 tesrhrYPAEFSGGQRQRIAIARALIlEPELLVLDEPTSSLDRS----------VQKQILDLLRGLQQ 473
                 66666666666666666666666655666777777766665555..........66666666666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.021        11      18      45 ..      35      63 ..      22     209 .. 0.74
   2 ?    6.0   0.2     0.016       8.7      22      46 ..     316     340 ..     307     478 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.021
      AAA_30 18 drvavltGpAGtGKt.talkalreaweaa 45
                  + +l+G  G+GK+ tal+++r ++eaa
  EHU00256.1 35 GETLALVGESGSGKSvTALSVMRLLHEAA 63
                4578899*******944566666666665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.016
      AAA_30  22 vltGpAGtGKttalkalreaweaag 46 
                  l+G  G+GK+t+  al ++++a+g
  EHU00256.1 316 GLVGESGSGKSTTGLALLRLIAAQG 340
                 589**********999999999987 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.096        52      18      41 ..      38      61 ..      27      71 .. 0.84
   2 ?    6.7   0.0    0.0053       2.9      17      44 ..     314     341 ..     299     347 .. 0.79
   3 ?   -1.7   0.0       1.9     1e+03     278     311 ..     470     503 ..     467     514 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.096
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllraira 41
                   +++vG  GsGK++++ + +r + +
     EHU00256.1 38 LALVGESGSGKSVTALSVMRLLHE 61
                   5799***********999987665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0053
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargd 44 
                     + +vG  GsGK+++  +llr i a+g+
     EHU00256.1 314 SLGLVGESGSGKSTTGLALLRLIAAQGE 341
                    46799******************99986 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.9
  TrwB_AAD_bind 278 glqsiaqlrevYGedaaqsilslvntklilrvsd 311
                    glq+  ql  v+ +++ + + sl++  ++lr  +
     EHU00256.1 470 GLQQQRQLSYVFISHDLEVVRSLCHQLIVLRQGE 503
                    8999999999999999999999999999999765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.017       9.4       4      22 ..      37      55 ..      34      68 .. 0.83
   2 ?    5.2   0.1     0.029        16       4      20 ..     314     330 ..     311     340 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.017
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++++G+sg+GK+ +a++ 
  EHU00256.1 37 TLALVGESGSGKSVTALSV 55
                5799***********9987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.029
      AAA_24   4 kiliyGpsgiGKTtlak 20 
                 ++ ++G+sg+GK+t+ +
  EHU00256.1 314 SLGLVGESGSGKSTTGL 330
                 6789**********876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.013       6.9       4      28 ..      40      66 ..      38     143 .. 0.80
   2 ?    3.4   0.7      0.14        77       4      16 ..     317     329 ..     315     339 .. 0.83
   3 ?    1.0   0.1       0.8   4.4e+02      66     120 ..     359     410 ..     339     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.013
      AAA_33  4 lvGlpGsGKstlaerllkklg..avll 28
                lvG +GsGKs  a ++++ l+  av+ 
  EHU00256.1 40 LVGESGSGKSVTALSVMRLLHeaAVVY 66
                89***********99998887755555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
      AAA_33   4 lvGlpGsGKstla 16 
                 lvG +GsGKst  
  EHU00256.1 317 LVGESGSGKSTTG 329
                 69*********75 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.8
      AAA_33  66 alsagrnvildatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaa 120
                  l+++++v++  +n   + r+ +l++    g   ++++ + + ++ +eR+ + +a
  EHU00256.1 359 PLRRRIQVVFQDPNSALNPRMTVLQIIA-EG--LAVHFPQLSAAQQEERVIAVMA 410
                 4799999*********999999999976.24..5688999999999999877555 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0      0.01       5.6       2      30 ..      35      63 ..      34      81 .. 0.87
   2 ?    4.1   0.1     0.073        39       5      30 ..     315     340 ..     311     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.01
                -EEEEEESSTTSSHHHHHHHHHHHHHHTT CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekkLvekg 30
                g ++ l G sgsGKs  a  + + L+e  
  EHU00256.1 35 GETLALVGESGSGKSVTALSVMRLLHEAA 63
                568899****************9999865 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.073
                 EEEESSTTSSHHHHHHHHHHHHHHTT CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekg 30 
                 + l G sgsGKst   al + + ++g
  EHU00256.1 315 LGLVGESGSGKSTTGLALLRLIAAQG 340
                 5688***********99999888877 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.005       2.7      15      48 ..      28      61 ..      16      66 .. 0.82
   2 ?    2.0   0.0      0.21   1.2e+02      22      47 ..     312     337 ..     292     354 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.005
  Mg_chelatase 15 leiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48
                  + +++  g  l lvG +GsGK++ a  ++ ll +
    EHU00256.1 28 VSLCVEAGETLALVGESGSGKSVTALSVMRLLHE 61
                  56666677899**************999999876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.21
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllp 47 
                   g +l lvG +GsGK+    +l  l++
    EHU00256.1 312 GESLGLVGESGSGKSTTGLALLRLIA 337
                   667889*********98888877776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.67   3.6e+02       3      25 ..      40      65 ..      38     105 .. 0.74
   2 ?   -0.4   0.0         3   1.6e+03      13      68 ..     197     261 ..     196     300 .. 0.71
   3 ?    6.1   0.0     0.028        15       3      34 ..     317     345 ..     315     392 .. 0.79
   4 ?   -1.8   0.0       7.7   4.2e+03      43      82 ..     452     484 ..     436     522 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.67
      AAA_18  3 ltGtpGvGKttlakeLskrl.gf..g 25
                l G +G+GK+  a  + ++l +   +
  EHU00256.1 40 LVGESGSGKSVTALSVMRLLhEAavV 65
                7899******9998888877433554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3
      AAA_18  13 tlakeLskrlgf...........gvnlrdvakenglllevdpealdeskrldedkldklldaleens 68 
                 tl +eL+++l++           +++l d+++  +    v+++  ++   l+++++++ +++l +n+
  EHU00256.1 197 TLLRELQQELNMgmlfithnlniVRQLADNVSVMRAGQVVEHN--RSAVLLRQPQHAYTQQLLAANP 261
                 8899999988888888877766655555555555544444444..5555556666666666666655 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.028
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvake 34 
                 l G +G+GK+t + +L ++       ++v+++
  EHU00256.1 317 LVGESGSGKSTTGLALLRLI---AAQGEVWFD 345
                 7899*********9997773...444444444 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 7.7
      AAA_18  43 pealdeskrldedkldklldaleenss...aleegknlvidgh 82 
                 p   ++ +r ++++   ll++l+++++            + +h
  EHU00256.1 452 PT--SSLDRSVQKQILDLLRGLQQQRQlsyV--------FISH 484
                 44..555555666666666666665544441........3333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.037        20       3      24 ..      40      61 ..      38      97 .. 0.83
   2 ?    4.3   0.0     0.092        50       3      23 ..     317     337 ..     315     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.037
  RNA_helicase  3 lyGpsgeGKStlakeLakallk 24
                  l+G+sg GKS++a ++++ l +
    EHU00256.1 40 LVGESGSGKSVTALSVMRLLHE 61
                  89**********9997776665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.092
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l+G+sg GKSt+   L + ++
    EHU00256.1 317 LVGESGSGKSTTGLALLRLIA 337
                   78*********9888777666 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00028      0.15       5      46 ..      18      59 ..      14      81 .. 0.85
   2 ?   -2.9   0.1       8.9   4.8e+03     104     119 ..     186     201 ..     177     209 .. 0.78
   3 ?    1.6   0.0      0.36     2e+02      25      41 ..     315     331 ..     294     344 .. 0.77
   4 ?   -2.0   0.1       4.7   2.5e+03      96     118 ..     446     469 ..     426     488 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00028
                     SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  5 sealkelleqikkvaktdlsvlitGesGtGKellaraiheas 46
                      ++l+++++ ++ +++   ++ ++GesG+GK++ a ++ +  
       EHU00256.1 18 GKQLHQVVKDVSLCVEAGETLALVGESGSGKSVTALSVMRLL 59
                     578999***************************998776654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.9
                      GS-HHHHHHHHHHHHH CS
  Sigma54_activat 104 elplelQekLlrvlqe 119
                       l++++Q+++l++l e
       EHU00256.1 186 ALDVTVQAQILTLLRE 201
                      6889999999999876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.36
                      EEEECSTTSSHHHHHHH CS
  Sigma54_activat  25 vlitGesGtGKellara 41 
                      + ++GesG+GK++   a
       EHU00256.1 315 LGLVGESGSGKSTTGLA 331
                      5589*******987655 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4.7
                      EEEEET.GGGS-HHHHHHHHHHHH CS
  Sigma54_activat  96 tlfLDe.igelplelQekLlrvlq 118
                       l LDe  ++l+ ++Q+++l +l 
       EHU00256.1 446 LLVLDEpTSSLDRSVQKQILDLLR 469
                      678888456899999999887774 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0031       1.7       2      26 ..      37      61 ..      36      74 .. 0.86
   2 ?    1.4   0.2       0.5   2.7e+02      69     137 ..     162     225 ..     125     246 .. 0.74
   3 ?    1.9   2.5      0.35   1.9e+02       5      26 ..     317     338 ..     314     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0031
                CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawae 26
                +++l Ge+GsGK++ + ++++++ e
  EHU00256.1 37 TLALVGESGSGKSVTALSVMRLLHE 61
                789************9999998876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.5
                 S-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCT CS
       NACHT  69 vsevwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdlee 137
                  ++v++ ++ l +  Lli D   e  t l+   ++++ tlL+el ++  l   +l++t   + +r+l+ 
  EHU00256.1 162 RQRVMIAMALLTQPKLLIAD---EPTTALDVTVQAQILTLLRELQQE--LNMGMLFITHNLNIVRQLAD 225
                 34477888888888888865...555555555558999999999999..88888888887777766655 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.35
                 EEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   5 lqGeaGsGKTtLlqklalawae 26 
                 l Ge+GsGK+t    l +++a+
  EHU00256.1 317 LVGESGSGKSTTGLALLRLIAA 338
                 78*******9865555555444 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.016       8.7      18      40 ..      35      57 ..      12      65 .. 0.75
   2 ?    3.4   0.4     0.091        49      23      39 ..     317     333 ..     312     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.016
                  TEEEEEEESTCHHHHHHHHHHHT CS
  Hpr_kinase_C 18 gvGvLitGesgvGKselaleLik 40
                  g  + ++Gesg GKs +al +++
    EHU00256.1 35 GETLALVGESGSGKSVTALSVMR 57
                  556789*************8775 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.091
                   EEESTCHHHHHHHHHHH CS
  Hpr_kinase_C  23 itGesgvGKselaleLi 39 
                   ++Gesg GKs ++l L+
    EHU00256.1 317 LVGESGSGKSTTGLALL 333
                   79************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 3566.26
//
Query:       EHU00257.1  [L=106]
Description: hypothetical protein CKS_2150 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  147.8   0.1    1.4e-43  147.6   0.1    1.0  1  YejG      YejG-like protein
  ------ inclusion threshold ------
      0.034   14.0   0.0      0.059   13.2   0.0    1.4  1  DUF503    Protein of unknown function (DUF503)


Domain annotation for each model (and alignments):
>> YejG  YejG-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.1   1.6e-47   1.4e-43       1     105 [.       2     103 ..       2     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 1.6e-47
        YejG   1 lqlsvvhrLPqsyrwlsgftgvkveplpeeeaseensliglkLlshdgesawevlrelkqsladiqvesaivelegePCLflereDesaalCrlknlGv 99 
                 lqlsvvhrLPq++rwls+ ++v +e+ ++   see ++i+l+L+shdg  awe+l+elk++l+ iqv+ +i+e+eg+PCLf++r+Desa++C+lkn+Gv
  EHU00257.1   2 LQLSVVHRLPQRFRWLSDRHSV-IETDDT--DSEERDVIALRLISHDGVPAWEILHELKDMLTAIQVDGKIAECEGQPCLFIRRCDESATNCCLKNQGV 97 
                 7*******************99.998865..778999************************************************************** PP

        YejG 100 aiaesi 105
                 aiae++
  EHU00257.1  98 AIAETF 103
                 ****98 PP

>> DUF503  Protein of unknown function (DUF503)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.5e-06     0.059      36      78 ..      21      63 ..       3      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.5e-06
      DUF503 36 vSvaEvdeqdlwqraeigvavvsnsrahveevldkvlrfiean 78
                 Sv E+d+ d+ +r +i++ ++s++   + e+l+++ +++ a 
  EHU00257.1 21 HSVIETDDTDSEERDVIALRLISHDGVPAWEILHELKDMLTAI 63
                59*********************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 838.42
//
Query:       EHU00258.1  [L=398]
Description: bicyclomycin/multidrug efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-45  154.5  46.3    3.5e-45  154.5  46.3    2.0  2  MFS_1     Major Facilitator Superfamily
    4.2e-11   42.4  36.5    1.5e-10   40.5  11.4    2.1  2  Sugar_tr  Sugar (and other) transporter
    3.7e-06   25.6   4.6    6.3e-06   24.9   4.6    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
    8.8e-05   22.0  32.9    0.00029   20.3  32.9    1.8  1  MFS_4     Uncharacterised MFS-type transporter YbfB
    0.00063   18.4  31.4    0.00096   17.8  19.3    2.4  2  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5  46.3   9.8e-49   3.5e-45       2     352 ..      16     357 ..      15     358 .. 0.89
   2 !    3.9   3.1    0.0058        21     138     178 ..     354     394 ..     351     398 .] 0.56

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 9.8e-49
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                  l+a+l+ l++++++pa+p  +a+++ +s+ ++++ l ly lg+a+++l++G+l+d +Gr++v+ lg l+fa +++++++ s++   l+++r+l Gl a
  EHU00258.1  16 GLLAMLMPLSIDMYLPAMP-QIARQFAVSAGSVQMTLNLYILGFAIGQLIYGPLADSYGRKPVITLGTLIFACAAAACAL-SQSIeQLIAMRFLHGLSA 112
                 5889***************.8*****************************************************666666.66666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +a+  +++al++d ++kee +r+++++++ + ++++l+p++gg+l+ +++W+a+f+ l i++l+  vl  +    +++ ++ ++++       ++ l +
  EHU00258.1 113 AAASVVINALMRDSYSKEEFSRMMSFVMLITTIAPLLAPIIGGWLLLLWSWHAIFWTLSIAALITTVL--VATQIRETLKPAQRQRFH----LRTTLGN 205
                 *****************************************************************999..777777777777777788....8888888 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllpl.ylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                  + al++++  +++++++ + f+g++++l   p+ y  e  ++s   + g++++l  ++ +i+ l+ +r ++r+g+ +   ++ll+ +++ + l+++++
  EHU00258.1 206 -FVALFRHKRAFSYMLSSGFSFAGLFTFLNAGPFvY-IELNHIS-PQSFGYYFGLNIVFLFIMTLINSRAVRRFGPVTLFRFGLLVQFAMGIWLLVVSA 301
                 .88888888554344444444445555555555555.9999999.7999999*********************************************** PP

       MFS_1 297 tssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ++  +l l++ + + + ++++v++ ++a++ d +p ++agtas+l++t++  +gal+
  EHU00258.1 302 FDLGFLPLVFGIAMFIgCVSMVSSNAMAVILDEFP-HMAGTASSLAGTLRFGVGALA 357
                 *999999997777777799999************7.*************99877776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0058
       MFS_1 138 pllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                  +l+g+l+s++++ +++ +++ ++l a + ++l+l++++p 
  EHU00258.1 354 GALAGALLSLFSFNSAWPMVGTIALCATLSVALFLYASRPH 394
                 35666666677766666666666666666444555555544 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5  11.4   4.3e-14   1.5e-10      49     188 ..      48     181 ..      32     189 .. 0.93
   2 !    8.2  17.2   0.00027      0.98     230     439 ..     188     394 ..     181     398 .] 0.77

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 4.3e-14
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                  ++++++++G +iG+l+ g+l+d +GRk+++  ++++f  +a+ +a+++   s+e+li++R+l G+++ +asv++  ++     k+  ++++s+  l +
  EHU00258.1  48 QMTLNLYILGFAIGQLIYGPLADSYGRKPVITLGTLIFACAAAACALSQ---SIEQLIAMRFLHGLSAAAASVVINALMRDSYSKEEFSRMMSFVMLIT 143
                 578999*******************************************...*********************************************** PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 t+  l+a i+g  l    +   w+  ++  ++ al+  +l+
  EHU00258.1 144 TIAPLLAPIIGGWLLLLWS---WHAIFWTLSIAALITTVLV 181
                 ***********99999988...9*99999999998877765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00027
                 HHHHHHH........HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHS.S-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHH CS
    Sugar_tr 230 sleaeqeee...kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenl.glsks..llvtiivgvvnfvatfvaiflvdrfGRRtllll 322
                 +l+ +q+++    +++++++     r +     +l ++  + G + +++ +p ++ +l ++s++   +  ++ +v  f++t++    v+rfG  tl+ +
  EHU00258.1 188 TLKPAQRQRfhlRTTLGNFVAL--FRHKRAFSYMLSSGFSFAGLFTFLNAGPFVYIELnHISPQsfGYYFGLNIVFLFIMTLINSRAVRRFGPVTLFRF 284
                 5555544444455555566666..5667777888888899999999999999887554156666764555566777899999999************** PP

                 HHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHH CS
    Sugar_tr 323 GaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflv 421
                 G+++++++ + l  v+ ++  +       ++++ia+fi + ++     ++v++ E+  +++ ++a+++a ++ + +  l + l   +  ++  ++v+ +
  EHU00258.1 285 GLLVQFAMGIWLL-VVSAFDLG----FLPLVFGIAMFIGCVSMVSSNAMAVILDEF--PHMAGTASSLAGTLRFGVGALAGALLSLFSFNSAWPMVGTI 376
                 ********99995.66666555....5778899*********************98..57889***********9999988777666555554999999 PP

                 HHHHHHHHHHHHHHHS-- CS
    Sugar_tr 422 faglavlfiifvfffvpe 439
                   +  + +++f +   p+
  EHU00258.1 377 ALCATLSVALFLYASRPH 394
                 999999999999877766 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   4.6   1.8e-09   6.3e-06      66     214 ..      32     182 ..      19     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.8e-09
       TRI12  66 alpnilqdvgqsenss.lfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelmsn.. 161
                 a+p+i ++   s  s  +   l+ +g a+  l+ g l+d +gr+p++ l  ++    a   + ++ ++ l+a   l g++a  a    +++  lm +  
  EHU00258.1  32 AMPQIARQFAVSAGSVqMTLNLYILGFAIGQLIYGPLADSYGRKPVITLGTLIFACAAAACALSQSIEQLIAMRFLHGLSAAAA---SVVINALMRDsy 127
                 7788888887777654145579***********************999988886666655555666666666666678776544...456677775322 PP

       TRI12 162 .ktkflglli..vsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavlliv 214
                  k  f  ++   + i +++   l+p +g  l +  sw  if+   i + i+ +l+ 
  EHU00258.1 128 sKEEFSRMMSfvMLITTIA-PLLAPIIGGWLLLLWSWHAIFWTLSIAALITTVLVA 182
                 2777876654103344444.459*******************99999999888764 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  32.9     8e-08   0.00029      12     349 ..      29     377 ..      19     391 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 8e-08
       MFS_4  12 ytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlah 109
                 y p +P++ ++  +s++ + +      lG+ +G l+    l+    R   +  g+l  + +++a+al +s+  ++++Rfl G+++A++ v++ +l+   
  EHU00258.1  29 YLPAMPQIARQFAVSAGSVQMTLNLYILGFAIGQLIYGP-LADSYGRKPvITLGTLIFACAAAACALSQSIEQLIAMRFLHGLSAAAASVVINALMRDS 126
                 889999999988888888888888888********8844.444444444499999999999***********************************999 PP

       MFS_4 110 aaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaa.aeaakaeqkslpllal..llaYgl.aG 204
                  ++ + +r+++++     +  +++  ++   l l +s++++ + l++ +++ ++lva+ ++ + l+ a+ + ++ ++++ + ++l++   +  Y l  G
  EHU00258.1 127 YSKEEFSRMMSFVMLITTIAPLLAP-IIGGWLLLLWSWHAIFWTLSIAALITTVLVATQIR-ETLKPAQRQrFHLRTTLGNFVALFRHkrAFSYMLsSG 223
                 9998888888887665555444433.3344567778888899999999********99999.6666666550556667777788876522678888459 PP

       MFS_4 205 fGYiitatFlvaiardg.aggalleallWllvGlaai...vgvlvwlrvakrsglrralaaallie.avgvllsllsp...splglivssvllGltfla 295
                 f +    tFl a         ++  + +   +Gl ++   + +l+  r+ +r g  ++++  ll++ a+g+ l ++s    + l l+ +  ++ +   +
  EHU00258.1 224 FSFAGLFTFLNAGPFVYiELNHISPQSFGYYFGLNIVflfIMTLINSRAVRRFGPVTLFRFGLLVQfAMGIWLLVVSAfdlGFLPLVFGIAMFIGCVSM 322
                 **********985444436788999999******98622245699999******************889999999865222444556666666666666 PP

       MFS_4 296 italvlqlarelappatrrllglm.TasfgigQilGpllasllaeatgslalall 349
                 + + +++++    p+   ++ +l+ T+ fg+g ++G+ll   +++ +  +   ++
  EHU00258.1 323 VSSNAMAVILDEFPHMAGTASSLAgTLRFGVGALAGALLSLFSFNSAWPMVGTIA 377
                 666778888899999998887776699***********98777776554444444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   5.3    0.0005       1.8     260     380 ..      46     157 ..       6     158 .. 0.81
   2 !   17.8  19.3   2.7e-07   0.00096     144     339 ..     136     329 ..     129     363 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0005
       MFS_2 260 aasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvf 358
                  +++ l + +++ ++g ++  pla  +g+k ++ lg+l+ +   + + l   +++  ++++ ++ g+++++a +++ +++ d++   e+       + +
  EHU00258.1  46 SVQMTLNLYILGFAIGQLIYGPLADSYGRKPVITLGTLIFACAAAACALS--QSIEQLIAMRFLHGLSAAAASVVINALMRDSYSKEEF-------SRM 135
                 45556666677777**********************99987777776666..9******************************999984.......456 PP

       MFS_2 359 favlsfisklatgiglgvsgll 380
                 ++++++i+ +a  ++ ++ g+l
  EHU00258.1 136 MSFVMLITTIAPLLAPIIGGWL 157
                 7777777777777776666665 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.7e-07
       MFS_2 144 vlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgv 242
                 + + +l++ +a+ll+ i gg  +    + ++ ++ ++ +l+++++v+++ +e     k+ + ++    ++l+++ ++fr++ +   +l+  + +++l+ 
  EHU00258.1 136 MSFVMLITTIAPLLAPIIGGWLLLLWSWHAIFWTLSIAALITTVLVATQIRET---LKPAQRQRFHLRTTLGNFVALFRHKRAFSYMLSSGFSFAGLFT 231
                 44566777777777777777333333444444444444444444444445544...233344455555567788899*****99999998888888888 PP

       MFS_2 243 lnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsml 339
                   ++  +++      + + + +++++ ++  ++++++ +++++r+g  +++ +g+l+++++++ +l++++ +l ++ +++ ia+f+ +v+++   +m 
  EHU00258.1 232 FLNAGPFVYIELNHiSPQSFGYYFGLNIVFLFIMTLINSRAVRRFGPVTLFRFGLLVQFAMGIWLLVVSAFDLGFLPLVFGIAMFIGCVSMVSSNAMA 329
                 888888888888888*****************************************************999999999999999999999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.20s 00:00:00.79 Elapsed: 00:00:00.35
# Mc/sec: 3407.02
//
Query:       EHU00259.1  [L=239]
Description: 16S rRNA pseudouridylate 516 synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-18   67.9   0.0    2.2e-18   66.8   0.0    1.5  1  PseudoU_synth_2  RNA pseudouridylate synthase
    1.8e-10   40.4   0.1      3e-10   39.6   0.1    1.4  1  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   2.5e-22   2.2e-18       2     160 .]      62     192 ..      61     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 2.5e-22
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      ++++nKP+g++++ ++       ++ t+ +  +e+  ++l++ +RLD +t+Gl+ll+++++++++ +   ++++++K+Y+++++ ap+++  a 
       EHU00259.1  62 YFMLNKPQGYVCSTDD------PDHPTIVYFIEEPMAFKLHAAGRLDIDTTGLVLLTDDGQWSHRITS--PRHHCEKTYRVTLE-APVSDDTAA 146
                      889*************......**********************************************..*************8.888888888 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                      +++                +l+++k+ t+   l+        + ++v l++ +Gr hQ+++++aa
       EHU00259.1 147 QFSAGV-------------QLHNEKSLTKPAQLEII------TPTEVLLTISEGRYHQVKRMFAA 192
                      777777.............78888899988888888......889******************96 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   3.4e-14     3e-10       1      48 []       1      47 [.       1      47 [. 0.91

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3.4e-14
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +RLdk+++ + l +sr  A + I+++rV+VNG+vv+d +++++p  ++
  EHU00259.1  1 MRLDKFIS-QQLEISRAIAGREIRGQRVTVNGEVVRDTAFKLQPDHEV 47
                8*******.555556****************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1980.58
//
Query:       EHU00260.1  [L=584]
Description: putative ATP-dependet helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-26   91.3   0.0    1.1e-25   90.6   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
    1.3e-12   48.1   0.0    3.5e-12   46.6   0.0    1.8  1  Helicase_C     Helicase conserved C-terminal domain
    5.6e-10   39.3   0.1    1.3e-09   38.1   0.0    1.6  2  SWI2_SNF2      SWI2/SNF2 ATPase
    2.8e-09   37.0   0.0    1.1e-08   35.0   0.0    1.9  2  DEAD           DEAD/DEAH box helicase
    5.2e-05   23.1   0.1    0.00013   21.8   0.0    1.7  2  AAA_30         AAA domain
     0.0044   15.8   0.0     0.0066   15.2   0.0    1.2  1  SNF2_N         SNF2 family N-terminal domain
     0.0053   16.8  10.9     0.0077   16.3   3.9    2.4  2  UPF0547        Uncharacterised protein family UPF0547
     0.0073   16.6   0.0       0.02   15.2   0.0    1.7  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.013   15.1   3.2      0.048   13.3   0.3    2.4  2  zf-tcix        Putative treble-clef, zinc-finger, Zn-binding
      0.037   13.3   0.0      0.061   12.6   0.0    1.2  1  DUF2075        Uncharacterized conserved protein (DUF2075)
      0.047   13.4  10.6       0.35   10.6   0.3    2.4  2  zinc_ribbon_2  zinc-ribbon domain
       0.12   12.2   0.3        0.3   11.0   0.3    1.6  1  MciZ           Mother cell inhibitor of FtsZ
       0.14   11.6   8.7          8    6.0   0.1    3.1  3  zf-ribbon_3    zinc-ribbon domain
       0.46   10.6  10.6       0.61   10.1   3.2    2.3  2  DZR            Double zinc ribbon


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   8.4e-29   1.1e-25       2     170 ..       3     154 ..       2     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 8.4e-29
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekd 100
                 ++lr+yQ+ea++++++++  ++++ ++i+++TG+GK+lv+a+l++  +      ++l+l++ k+l+ q  ++++ +  ea+     +  g ++k+    
  EHU00260.1   3 FTLRPYQQEAVDATVAHFR-RHHEPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKELVAQNHSKYQAYGLEAD----IFAAGLQRKE---- 87 
                 789***************9.999********************999998.....9***********************985....4555555555.... PP

                 ...-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHH....HHT---SEEEEEESS-S CS
      ResIII 101 stnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swrei....lekfkeavllglTATpe 170
                  +++k+++ ++qs+ +++        +l +++f ++i+DE+Hr+g++k  ++++i     +++++  llglTATp 
  EHU00260.1  88 -SQRKVVFGSVQSVARNL--------SLFDSAFSLVIVDECHRIGDDKesQYQQIfthlRQHNPNLRLLGLTATPF 154
                 .7899*************........99******************9556999996665666677**********7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   2.7e-15   3.5e-12       4     109 ..     240     342 ..     237     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.7e-15
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                 +++ +++++  +++ ++if+ t++++ + ++ll      ++a + +e+ +++r++ +++f++++ ++L+   v+ +G d p v+l+ ++ + ++v+ y+
  EHU00260.1 240 QIIRQIVEFADDRQGVMIFASTVEHAREiLSLL----PENSALVSAETHAKDRDALIAAFKAQQLKFLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 334
                 5677777888999***********996444444....56889999****************************************************** PP

                 HHHTTSSS CS
  Helicase_C 102 qriGRtgR 109
                 q +GR  R
  EHU00260.1 335 QIVGRGLR 342
                 *****988 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0     1e-12   1.3e-09       1     159 [.       8     155 ..       8     167 .. 0.86
   2 ?   -2.8   0.0       3.1   3.9e+03      80     105 ..     221     245 ..     206     291 .. 0.56

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1e-12
   SWI2_SNF2   1 qQyravekavervkegdrkgGviWHtqGSGKsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfakageekpkqaesrkeLkellekesekiif 99 
                 +Q  av ++v++ +++ ++  vi   +G+GKsl  + la+  +       +v+v+   k+L  Q ++++++ g e+       + L+++   +++k++f
  EHU00260.1   8 YQQEAVDATVAHFRRH-HEPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHVKELVAQNHSKYQAYGLEAD---IFAAGLQRKE--SQRKVVF 94 
                 6899*********996.89999999********99999887777......9*******************9998874...3334566554..589**** PP

   SWI2_SNF2 100 ttiqKfeeeekeklevlsereniivlvDEaHR......sqygelakklrkalpnaafigFTGTPil 159
                   +q  +++       l ++   +v+vDE+HR      sqy+++ ++lr++ pn  ++g+T TP  
  EHU00260.1  95 GSVQSVARN-----LSLFDSAFSLVIVDECHRigddkeSQYQQIFTHLRQHNPNLRLLGLTATPFR 155
                 ******653.....346777779*********7777777999**********************75 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.1
   SWI2_SNF2  80 aesrkeLkellekesekiifttiqKf 105
                   s+++L+++l k++++i   +i  +
  EHU00260.1 221 LFSEADLNREL-KQQQRITPQIIRQI 245
                 44555666666.33444443333333 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   8.9e-12   1.1e-08       2     169 ..       7     153 ..       6     157 .. 0.76
   2 ?   -1.4   0.0       1.4   1.8e+03     144     170 ..     240     263 ..     221     304 .. 0.48

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 8.9e-12
                 HHHHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 ++Q+ea+++++     + +  ++  +TG+GK+l+  i+ l+++       + ++l+++  +eL+ q +++++ ++ ++d+ +    g +++++q++++ 
  EHU00260.1   7 PYQQEAVDATVahfrrHHEPAVIVLPTGAGKSLV--IAELARL------ARGRVLVLAHVKELVAQNHSKYQAYGLEADIFA---AGLQRKESQRKVV- 93 
                 7899999999866665558999***********9..4444444......567********************9999877333...3444455555555. PP

                 TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                       +g  + +++ ls   l  s ++++++DE++r+ d+  + ++++i+++l+q + + +    ++ l+AT+
  EHU00260.1  94 ------FGSVQSVARNLS---LFDSAFSLVIVDECHRIGDD-KESQYQQIFTHLRQHNPNLR----LLGLTATP 153
                 ......555555555443...2237899************8.99**********87665544....*******8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 HHHHHSHHHCTTSTTTSE.EEEEESSBS CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
        DEAD 144 rilnqlpqitcdgklqrq.vivlSATlp 170
                 +i++q+ +  +d    rq v+++  T++
  EHU00260.1 240 QIIRQIVEFADD----RQgVMIFASTVE 263
                 344444222222....222444444433 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     1e-07   0.00013       2     123 ..       5     148 ..       4     151 .. 0.81
   2 ?   -3.0   0.0         4   5.1e+03      35      63 ..     242     269 ..     239     291 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1e-07
      AAA_30   2 lnaeQaaaveallts...gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa...eelgieastiakllkrlk............. 81 
                 l++ Q++av+a++++   ++  av++ p G+GK+ ++++l+++++   grv++lA+ ++  ++     ++ g+ea+  a  l+r +             
  EHU00260.1   5 LRPYQQEAVDATVAHfrrHHEPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAHVKELVAQNHskyQAYGLEADIFAAGLQRKEsqrkvvfgsvqsv 100
                 667788888877665111344689******************999...7999999988866654424458889******999999999*********** PP

      AAA_30  82 ..grarlepg.tllivDEagmv...dtkqlaallkaaekagakvilvG 123
                   +   ++++ +l+ivDE   +     +q +++++++++++  ++l+G
  EHU00260.1 101 arNLSLFDSAfSLVIVDECHRIgddKESQYQQIFTHLRQHNPNLRLLG 148
                 98555677889********99965556789999999999998888887 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4
      AAA_30  35 lkalreaweaaggrviglAptgkaAkvLa 63 
                 +++++e ++++ + v+++A+t + A+++ 
  EHU00260.1 242 IRQIVEFADDR-QGVMIFASTVEHAREIL 269
                 56666666655.34888899888888744 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.2e-06    0.0066     125     215 ..      51     153 ..       8     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.2e-06
                 EE--SSHHHH-----------------EEEE-HHHHHHHT.............TTS-S-S-SEEEES-GGGT--T.TSHHHHHHHH---S-...EEE.E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx...xxx.x RF
      SNF2_N 125 rvlvyggqkkmkkkntkvapklladydvvittYdvlsreaelq.......kkrsvlkqvewkrvvlDEghtlkns.tskaaeavskLstsn...rwi.l 211
                 rvlv    k+ + +n+   +++  ++d+   ++++ +++ +++       +++  l +     v++DE+h+++   +s+ +++  +L+++n   r++ l
  EHU00260.1  51 RVLVLAHVKELVAQNHSKYQAYGLEADIFAAGLQRKESQRKVVfgsvqsvARNLSLFDSAFSLVIVDECHRIGDDkESQYQQIFTHLRQHNpnlRLLgL 149
                 456666666677777888888889999999999998877777789999887888899999*************9978999999999*988744444348 PP

                 -S-- CS
                 xxxx RF
      SNF2_N 212 tGTP 215
                 t+TP
  EHU00260.1 150 TATP 153
                 8888 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.6      0.03        38      16      22 ..     382     388 ..     380     389 .. 0.87
   2 !   16.3   3.9     6e-06    0.0077       1      20 [.     431     450 ..     431     451 .. 0.99

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.03
     UPF0547  16 fCphCGy 22 
                 fCp CG+
  EHU00260.1 382 FCPACGF 388
                 9*****9 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6e-06
     UPF0547   1 KvCPeCeakvPvaaqfCphC 20 
                 K+CPeC a+  +aa++C++C
  EHU00260.1 431 KNCPECNAENDIAARRCREC 450
                 9******************* PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05      0.02       8     112 ..      27     137 ..      21     153 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsst..sskdllrellralglelkaerlsseellealeqalrarav....iellii 97 
                  v++ ++G+GK++++++l++ +         r +v+   +v+  +    s  + +   + ++  +l +++ +++ ++  ++  +r+ +      +l+i+
  EHU00260.1  27 AVIVLPTGAGKSLVIAELARLA---------RGRVLvlaHVKELVAQnhSKYQAYGLEADIFAAGLQRKESQRKVVFGSVQSVARNLSLfdsaFSLVIV 116
                 677779***************9.........5555445733333333333333333333333333333556899999***********9********** PP

      AAA_22  98 DEaqhlr..s....eealeeL 112
                 DE +++   +    ++++++L
  EHU00260.1 117 DECHRIGddKesqyQQIFTHL 137
                 *****9665223444444444 PP

>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.15   1.9e+02      13      20 ..     383     390 ..     382     395 .. 0.89
   2 ?   13.3   0.3   3.7e-05     0.048      10      33 ..     430     451 ..     427     459 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.15
     zf-tcix  13 CpkCGtyN 20 
                 Cp CG  N
  EHU00260.1 383 CPACGFAN 390
                 *****988 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.7e-05
     zf-tcix  10 vrkCpkCGtyNGtRglsCkNkaCd 33 
                  + Cp+C ++N +++++C+  +Cd
  EHU00260.1 430 FKNCPECNAENDIAARRCR--ECD 451
                 699***************8..455 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.7e-05     0.061      10     109 ..      33     131 ..      29     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.7e-05
     DUF2075  10 aGtGKtvvllnllael..eddeeertavylsvNhplvlvlrealakke.....ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 +G+GK++v  +l+  +  +   + + + ++ +Nh+  +++  + +  +     +++++k +f  ++s+  nls          +  + +vivDE hr+ 
  EHU00260.1  33 TGAGKSLVIAELARLArgRVLVLAHVKELVAQNHSKYQAYGLEADIFAaglqrKESQRKVVFGSVQSVARNLS--------LFDSAFSLVIVDECHRIG 123
                 5*********999888555556888888999999888865433322222245455777888888888888888........88899************9 PP

     DUF2075 102 tksdqaek 109
                 + ++++ +
  EHU00260.1 124 DDKESQYQ 131
                 95444332 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00027      0.35       9      21 ..     376     388 ..     374     390 .. 0.87
   2 ?    6.1   4.6    0.0071       9.2       2      19 ..     433     450 ..     432     450 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
  zinc_ribbon_2   9 lqdnakFCpyCGt 21 
                    +++ ++FCp CG+
     EHU00260.1 376 NEPVQVFCPACGF 388
                    88999*******7 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0071
  zinc_ribbon_2   2 CpnCGaelqdnakFCpyC 19 
                    Cp+C ae++  a+ C +C
     EHU00260.1 433 CPECNAENDIAARRCREC 450
                    ***************999 PP

>> MciZ  Mother cell inhibitor of FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00023       0.3      14      31 ..     561     578 ..     558     582 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
                 SEHHHHHHHHHHHHHHXS CS
        MciZ  14 GKAWEIRekLKeYgkqye 31 
                 G+ W+IRekL  Y+ ++ 
  EHU00260.1 561 GRFWQIREKLFDYQGRFR 578
                 888**********99985 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0062         8      16      23 ..     380     387 ..     373     389 .. 0.73
   2 ?    4.7   5.1     0.016        21       3      22 ..     431     450 ..     429     452 .. 0.91
   3 ?    4.5   0.1     0.018        24       3      17 ..     445     460 ..     443     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0062
  zf-ribbon_3  16 dnvCpyCG 23 
                  +++Cp CG
   EHU00260.1 380 QVFCPACG 387
                  66777777 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
  zf-ribbon_3   3 vrCPnCGa.plssddnvCpyC 22 
                  ++CP+C+a + +  ++ C  C
   EHU00260.1 431 KNCPECNAeN-DIAARRCREC 450
                  79********.*****99999 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.018
  zf-ribbon_3   3 vrCPnCGa.plssddn 17 
                  +rC +C++ ++++dd+
   EHU00260.1 445 RRCRECDKiLVDPDDM 460
                  79******88****96 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.0    0.0074       9.5       7      48 ..     375     450 ..     370     451 .. 0.81
   2 ?   10.1   3.2   0.00048      0.61       1      22 [.     433     454 ..     433     466 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0074
         DZR   7 elppdarfCseCgtk..lkavaa..................................edrCpsCgekvdpearfCpeC 48 
                 +++p + fC++Cg +       +                                   ++Cp+C++++d  ar C eC
  EHU00260.1 375 DNEPVQVFCPACGFAntF--WGKatsdgmviehfgrrcqgvleddegereqcdyrfrFKNCPECNAENDIAARRCREC 450
                 567777899999987442..23344678888899999999999999999999999999******************** PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00048
         DZR   1 CpqCgeelppdarfCseCgtkl 22 
                 Cp+C++e++  ar C eC + l
  EHU00260.1 433 CPECNAENDIAARRCRECDKIL 454
                 9999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4234.29
//
Query:       EHU00261.1  [L=94]
Description: 50S ribosomal subunit protein L25 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-24   83.8   0.1    9.9e-24   83.7   0.1    1.0  1  Ribosomal_L25p  Ribosomal L25p family
  ------ inclusion threshold ------
      0.048   13.8   0.1      0.065   13.4   0.1    1.2  1  KapB            Kinase associated protein B


Domain annotation for each model (and alignments):
>> Ribosomal_L25p  Ribosomal L25p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.1   1.1e-27   9.9e-24       1      81 []       4      91 ..       4      91 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.1e-27
                    EEEEECTS.SCCCHHHHHHTTEEEEEEEESSSCEEEEEEEHHHHHHHCH.....CSEEEEEETT..CEEEEEEEEEETTTTCEEEEEE CS
  Ribosomal_L25p  1 LkaekRte.gkgaarrlRregkvPavlyGggkepisisvdakelrkllkt....stlieLevdg..ekvllkdvqrhpvkdkilHvDF 81
                    ++a +R+e gkga+rrlR++++ Pa++yGg ++++si +d++++++l  +     ++++L vdg  +kv +++vqrhp+k k+ H+DF
      EHU00261.1  4 INAVERKEqGKGASRRLRAANRFPAIIYGGSEAAVSIDLDHDQVMNLQAKpgfyEEVLTLVVDGkeTKVKVQAVQRHPFKPKLHHIDF 91
                    68999*888***************************************88*************8777********************9 PP

>> KapB  Kinase associated protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.2e-06     0.065      13      37 ..      65      89 ..      52      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.2e-06
        KapB 13 ereqkllvkvlaVlkhPtqGDLHnp 37
                + ++++ vkv+aV++hP +  LH+ 
  EHU00261.1 65 VDGKETKVKVQAVQRHPFKPKLHHI 89
                4578899****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 705.24
//
Query:       EHU00262.1  [L=334]
Description: nucleotide associated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-95  318.6   0.0    5.3e-95  318.5   0.0    1.0  1  NA37      37-kD nucleoid-associated bacterial protein


Domain annotation for each model (and alignments):
>> NA37  37-kD nucleoid-associated bacterial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.5   0.0     3e-99   5.3e-95       2     309 .]      10     324 ..       9     324 .. 0.97

  Alignments for each domain:
  == domain 1  score: 318.5 bits;  conditional E-value: 3e-99
        NA37   2 iHildknsdeeilse.....leldendeiveylvkhlnkifkskegkygrFsedseelfaellkeylegeeddFvefSkklaeqLfeeleknesaesGd 95 
                 +H+l k ++++   e     + l + + +ve ++++l++++++k++ yg F+ +se  +ae+l+ +++g + dF++fS++++ +L++el+k+++ae+G 
  EHU00262.1  10 LHQLIKRDENQL--ElvlrdSLL-PATSTVEAMAEELHRVYSAKSKAYGLFNAESE--LAEALRNCRKGHD-DFLAFSRAATGRLRDELAKYPFAEGGV 102
                 8******88866..455665888.899******************77*********..***********77.9************************** PP

        NA37  96 llvvhyeseatdy..iailkseykkafthnleleedkhldlqkldkaarInltew.....ssrylsfidkragrkdvsyffedfLgceegvdskkqtkk 187
                 +l+++y+++a++y  +ail+s+++++++++++++++++ld+++ d++arI+l ew     s ryl+f+++r+grk v++ff+dfLg+e g+d+k+q++ 
  EHU00262.1 103 VLFIQYRYLAVEYllVAILNSQSSMRVNEQMDISSTHYLDINHADIVARIDLIEWetnpeSTRYLTFLRGRVGRK-VADFFMDFLGAEVGLDTKAQNRG 200
                 **************************************************************************9.*********************** PP

        NA37 188 llkavedfakkeeldkaekqelrkrvveylkeqleegesvdleelaeelfkdnpee.kefvkeeeeyeleeefpvdkekklkklkkfigsgigisisfd 285
                 ll+av+d++++ +ldk e+q++r++v++y++eql++ge++ l+ l+ el++  ++  ++f++e + yelee fp+d+ ++l++l+kf gsg+g++++fd
  EHU00262.1 201 LLQAVDDYCDESNLDKNERQNYRQQVYSYCNEQLQAGEEIALKALSGELPPLGDKTfEAFTQE-QGYELEEHFPADR-STLRQLTKFAGSGGGLTLNFD 297
                 ***************************************************999778888888.*************.********************* PP

        NA37 286 re...ervsnddgtdtltIkgippnlk 309
                 ++   er+++d+ tdtltIkg+ppnl+
  EHU00262.1 298 AMllgERIFWDPVTDTLTIKGTPPNLR 324
                 99***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2832.86
//
Query:       EHU00263.1  [L=74]
Description: uncharacterized DUF1414 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-24   83.3   0.6    1.4e-23   82.6   0.6    1.4  1  DUF1414   Protein of unknown function (DUF1414)


Domain annotation for each model (and alignments):
>> DUF1414  Protein of unknown function (DUF1414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.6   7.9e-28   1.4e-23       2      44 .]      27      69 ..      26      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 7.9e-28
                T-HCHHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHH CS
     DUF1414  2 kApvDLsLmvLGNmvTnilnssVpeaqRealAekFaqALknSv 44
                +Ap+DLsLmvLGNmvTn++ns+V++aqR+alA +Fa+AL++Sv
  EHU00263.1 27 QAPTDLSLMVLGNMVTNLINSDVAPAQRRALARSFADALQASV 69
                9*****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 565.19
//
Query:       EHU00264.1  [L=584]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-105  351.2  12.3   3.5e-105  350.6  12.3    1.2  1  DUF3413    Domain of unknown function (DUF3413)
    6.1e-20   71.8   0.9    1.3e-19   70.8   0.9    1.5  1  Sulfatase  Sulfatase
     0.0021   18.3   0.0     0.0038   17.5   0.0    1.4  1  DUF4968    Domain of unknown function (DUF4968)
     0.0026   16.2   1.9      0.017   13.6   0.0    2.2  2  CBP_BcsG   Cellulose biosynthesis protein BcsG
  ------ inclusion threshold ------
       0.05   12.2   0.0      0.071   11.7   0.0    1.1  1  DUF229     Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> DUF3413  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.6  12.3  9.7e-109  3.5e-105       2     247 ..       6     251 ..       5     252 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.6 bits;  conditional E-value: 9.7e-109
     DUF3413   2 kkyrekvsqlirwghwFalfnillalliglrYlfasdlPetllgllYlvvsllghfsflafliyllvlfpltflipsrrllrglaviiatlglilLlvD 100
                 ++yrekvsq+i+wghwFalfni++al++g+rYl ++d+P +l+g++Y+  s++ghfsf++f++yll++fpltf+++s+rl+r+l+ ++at+gl+lL+vD
  EHU00264.1   6 QRYREKVSQMISWGHWFALFNIFFALILGSRYLLVADWPASLAGRIYAYSSWIGHFSFIVFAAYLLIIFPLTFVVMSQRLMRVLSSVVATAGLTLLMVD 104
                 689************************************************************************************************ PP

     DUF3413 101 tevfqqyklHLnpvvlelllngeqselssswllllilvlvilllelllanlvwkklrklkrkklgkpvalvlllaflashlihiwadAnlyrpitqqka 199
                 ++vf++++lHLnpvv+el++n++qse++++w+l++i v++i+l+e+l+a+++wkklr+l+r+ +gkp+a+++++af+ashl++iwadAn+yrpit+q+a
  EHU00264.1 105 SAVFNRFHLHLNPVVWELVINPDQSEMARDWQLMFIGVPLIFLVEILFATWSWKKLRSLNRRSFGKPLAALFICAFFASHLMYIWADANFYRPITMQRA 203
                 *************************************************************************************************** PP

     DUF3413 200 nlPLsypltAksflekhglldeeeyeerkaeqerksasslnYPleplq 247
                 nlPLsyp+tA++fle+hglld++ey++r ++q++++a  ++YPl+ ++
  EHU00264.1 204 NLPLSYPMTARRFLERHGLLDAQEYQRRLVQQGNPEAAAVQYPLSDIT 251
                 ********************************************9987 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.9   3.5e-23   1.3e-19       3     305 ..     261     498 ..     259     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 3.5e-23
                 EEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEE CS
   Sulfatase   3 vvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigk 101
                 +++i++d l     ++ +  ta  p+l   a++ +rft+++sa+    + ++ l+ g +p  ++         +  ++t+++L++ l  +GY+      
  EHU00264.1 261 LLVITVDGL-----NSANTDTA-LPALGVFARQNVRFTQHFSAGDNAERGLFGLFYGISPSYMNG--------VLAQRTPSALLTALSTQGYQF----- 340
                 566666655.....23334444.8**************************************992........7888999**************..... PP

                 S-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH..HCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGST CS
   Sulfatase 102 whlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl..larndkpfflylatlapHappeapdeyakkyat 198
                    g++s      ++gf++ l ++++ ++++ p +++                +  + +++++l  ++ ++ p+f++la+++p        +  +k   
  EHU00264.1 341 ---GLFS------SDGFNQPLYRQALLSDYSLPASGDQP-------------NASTVSQWQNWLstQKVDGTPWFSWLALNGPDI-----SGNNDK--- 409
                 ...7773......567***99999999999998855543.............455666666666637777**************8.....222333... PP

                 TTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGG CS
   Sulfatase 199 ffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshi 297
                              ++yl+     +++i+ +l +L++  ll+nt+vv+t+ hg +le+        + ++ + + ++vPl+++wp++ a+ ++  l++h 
  EHU00264.1 410 ----------TRQRSYLRQAPALNEQIQAILTTLQQRDLLKNTVVVITAQHGIALEG-------DPDNEGNRQNLQVPLVIHWPDTPAQ-TVTRLSDHQ 490
                 ..........34479****************************************66.......555566789****************.********* PP

                 GHHHHHHH CS
   Sulfatase 298 Dlfptild 305
                 D++ t+++
  EHU00264.1 491 DVMVTLMQ 498
                 *****997 PP

>> DUF4968  Domain of unknown function (DUF4968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0038      49      90 ..     521     561 ..     484     564 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
     DUF4968  49 ektefeveekedevvikTekltvkieksplrisfydkegkll 90 
                 +  ++ ++ +++++vi+T k+t++ + ++++ + yd++g++l
  EHU00264.1 521 RRHDWVTSSEDNKLVITTPKVTLVLN-NNGSYRAYDADGNTL 561
                 6789**********************.*************98 PP

>> CBP_BcsG  Cellulose biosynthesis protein BcsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.7     0.048   1.7e+02      13      61 ..      57     106 ..      53     115 .. 0.79
   2 !   13.6   0.0   4.7e-06     0.017     352     414 ..     394     457 ..     345     476 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.048
    CBP_BcsG  13 lagylkfhlllnllflal.lllplrskllrklrqliaipvglaLlyhdsw 61 
                 ++g+ +f +++  l++++ l + + s++l ++ + + + +gl+Ll  ds 
  EHU00264.1  57 WIGHFSFIVFAAYLLIIFpLTFVVMSQRLMRVLSSVVATAGLTLLMVDSA 106
                 8899999988887777663667777777777777777889*****99997 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.7e-06
    CBP_BcsG 352 ntisLhDGnrlagskklsslasYkprakkllddldkfideleksg..rkvvvvlvPehGaalrgd 414
                   ++L  G  + g++ ++++ sY ++a +l +++++++++l++++  +++vvv+  +hG al+gd
  EHU00264.1 394 SWLAL-NGPDISGNNDKTRQRSYLRQAPALNEQIQAILTTLQQRDllKNTVVVITAQHGIALEGD 457
                 34444.577888999999************************987669****************9 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     2e-05     0.071     307     344 ..     415     452 ..     403     519 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
      DUF229 307 kfnllealDedllkylkklekkgllentlvlllsDHGl 344
                 ++  + al+e++ ++l++l++++ll+nt+v++ + HG 
  EHU00264.1 415 YLRQAPALNEQIQAILTTLQQRDLLKNTVVVITAQHGI 452
                 566778899****************************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4192.01
//
Query:       EHU00265.1  [L=413]
Description: phage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-25   88.5   0.3    1.4e-24   86.8   0.0    1.9  3  Phage_integrase  Phage integrase family
    1.7e-18   66.7   0.2    3.4e-18   65.8   0.2    1.5  1  Arm-DNA-bind_3   Arm DNA-binding domain
    1.8e-05   24.9   0.1    5.3e-05   23.4   0.1    1.8  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.095   13.3   1.2        1.1    9.9   0.1    2.6  2  Ribosomal_S20p   Ribosomal protein S20


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.57   2.6e+03      73     116 ..     108     133 ..      73     175 .. 0.54
   2 ?   -2.2   0.0      0.67     3e+03      21      42 ..     163     184 ..     146     190 .. 0.72
   3 !   86.8   0.0   3.1e-28   1.4e-24       3     170 ..     215     378 ..     213     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.57
                      THHHHHHHHHHHHHHCHCCTTTSBSSBETTSSB--HHHHHHHHH CS
  Phage_integrase  73 seealellkellskaleeaeksellfaskrgkplsrqtvrkafk 116
                      ++ a+ ++++  s++                  l ++t++++++
       EHU00265.1 108 QKVAADWYEMKKSQN------------------LAANTIKDIWR 133
                      333333333333333..................33333333333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.67
                      HHHHHHHHHHHHHT--HHHHTT CS
  Phage_integrase  21 irdklllellyetGlRisElls 42 
                      i+ +  le+l +  +Ri+E++ 
       EHU00265.1 163 IKARGNLETLKRVLQRINEIMD 184
                      6667778888888889999875 PP

  == domain 3  score: 86.8 bits;  conditional E-value: 3.1e-28
                      HHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   3 ltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      ++++++ +l+++l   s + +++ll+e+ + t +R  E ++ r+++++l+++++++++ ++K+++++++pl e+al +l+ +   +      +e
       EHU00265.1 215 IRPEQLPELMQTLSIaSIERHTRLLIEWQLLTVTRPVESAEARWEEINLADNTWTIPAGRMKMRRDHIIPLCEQALAVLEAMKPIS----AHRE 304
                      789************99*******************************************************99999998887777....778* PP

                      BSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase  96 llfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthva 170
                      ++f+s   ++ p+s+q++++a++r++++      l +H lR  f+ta +e+g+ ++v++ +l+H + + + + Y++++
       EHU00265.1 305 YVFPSFkkPTLPMSSQSANAALRRMGYQ----GVLVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVrRAYNRSN 378
                      ****9977899*****************....4568**********************************999*9987 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.2   7.6e-22   3.4e-18       1      73 [.       8      94 ..       8      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 7.6e-22
  Arm-DNA-bind_3  1 LTdkaikaladsd.kklprd..GLglrvtpsGaktfvlryr...........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    LT+++ika+++ d +++ +d  GL+l ++psG+k +++ y+           +G+ +a+sla+A+k+++e+raliaqGiDP+ ++++
      EHU00265.1  8 LTNTEIKAAKPADkEYTLQDgaGLYLLIKPSGSKIWRFSYYrptdkkralvsFGSLDALSLADAQKRRDEYRALIAQGIDPQIHQQQ 94
                    89******8877744333348******************999*******8666****99***********************99886 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   1.2e-08   5.3e-05       1      48 [.     106     154 ..     106     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.2e-08
                      ..HHHHHHHHHHHH.HHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HH CS
  Phage_int_SAM_3   1 tFsefleeWleeyk.prvkesTyatyksiiknhIlPyFgniklkkItpa 48 
                      tF++++  W+e++k +++  +T++   + +++++lP +gn +++++t++
       EHU00265.1 106 TFQKVAADWYEMKKsQNLAANTIKDIWRSLEKYVLPDIGNTPINELTAR 154
                      9***********999*******************************986 PP

>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00025       1.1      40      72 ..     162     199 ..     116     204 .. 0.80
   2 ?    1.3   0.1      0.12   5.5e+02       9      24 ..     364     379 ..     358     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
                     C.....-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHH CS
  Ribosomal_S20p  40 a.....dkekaqealkkaiskidkaakkgvihkNtAaR 72 
                           + e+++  l+ +   +d aa+ g+i  NtAa+
      EHU00265.1 162 PikargNLETLKRVLQRINEIMDFAANSGLIEINTAAN 199
                     2333567888***************************8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
                     HHHHHHHHHHHHHHHH CS
  Ribosomal_S20p   9 rirqnekrrlrNrsyk 24 
                      + +ne rr++Nrs++
      EHU00265.1 364 HVDTNEVRRAYNRSNY 379
                     6889*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3037.81
//
Query:       EHU00266.1  [L=46]
Description: hypothetical protein CKS_2140 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 373.84
//
Query:       EHU00267.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00267.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00267.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00267.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00267.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00267.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00267.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00267.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00267.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00267.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00267.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00267.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00267.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00267.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00267.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00267.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00267.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00267.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 2844.51
//
Query:       EHU00268.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-97  326.7   3.8    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      3e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   8.7    1.9e-10   41.4   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.023   14.5   5.9      0.036   13.8   5.9    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.028   13.6   1.5      0.054   12.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   12.9   6.3      0.048   12.2   6.3    1.3  1  FUSC             Fusaric acid resistance protein family
      0.032   14.6   4.4       0.12   12.8   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.044   13.0   0.5      0.074   12.2   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.096   12.2   2.0       0.12   11.9   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.14   11.9   9.9       0.23   11.2   9.9    1.2  1  ERM              Ezrin/radixin/moesin family
       0.17   11.8   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.19   12.1   3.0       0.49   10.7   3.0    1.7  1  HalX             HalX domain
       0.29   10.8   2.3        1.1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
          1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        4.2    6.9   7.3        9.3    5.7   7.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        6.1    7.5   8.3        8.1    7.1   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.4      0.13   1.3e+02     167     217 ..      34      87 ..      22     121 .. 0.45
   2 !  325.1   0.0    4e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeq 217
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+
    EHU00268.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEE 87 
                   45566566667777776666643113332233333333333333333322.1111 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00268.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00268.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00268.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.4e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.4e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00268.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.6e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00268.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   8.7     2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00268.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.9   3.9e-05     0.036     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00268.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.5   5.7e-05     0.054      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00268.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.3   5.1e-05     0.048     213     294 ..       4      89 ..       1     120 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU00268.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   0.00012      0.12      22      55 ..      23      56 ..      12      71 .. 0.82
   2 ?    2.8   0.5      0.16   1.5e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHU00268.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888899************************985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00268.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   7.8e-05     0.074      24      76 ..      37      91 ..      33     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00268.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEV 91
                578***************8777443335566677788888999********9986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00013      0.12     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.3   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU00268.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   3344444555555556666666778999999999998888665543889999999****9999************999844.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00268.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   9.9   0.00024      0.23      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00268.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.3   2.1e+03      26      54 ..      16      44 ..       9      62 .. 0.79
   2 ?    3.1   0.0     0.092        87      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.022        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.3
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00268.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.092
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU00268.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555554.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.022
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00268.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.0   0.00052      0.49       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00268.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0011       1.1     152     191 ..      17      56 ..       5      65 .. 0.86
   2 ?    1.7   0.1      0.19   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHU00268.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00268.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.5   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00268.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00268.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4   0.00097      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00097
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00268.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0042         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.085        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00268.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.085
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00268.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.3    0.0098       9.3      70     152 ..      13      97 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0098
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00268.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666677777888888888888888885542278888999************************98766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0086       8.1      22      53 ..      12      43 ..       8      50 .. 0.87
   2 ?    3.2   0.8      0.15   1.4e+02      34      57 ..      68      91 ..      62     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00268.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677899********************887665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00268.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                     1020  (0.0568911); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 3952.74
//
Query:       EHU00269.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00269.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 937.43
//
Query:       EHU00270.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00270.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00270.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00270.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00270.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 911.47
//
Query:       EHU00271.1  [L=375]
Description: outer membrane porin protein C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-131  438.2  30.6   2.8e-131  438.0  30.6    1.0  1  Porin_1   Gram-negative porin
    3.3e-16   59.9  49.8    3.3e-16   59.9  49.8    1.3  1  Porin_4   Gram-negative porin


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.0  30.6  3.1e-135  2.8e-131       1     340 []      28     375 .]      28     375 .] 0.97

  Alignments for each domain:
  == domain 1  score: 438.0 bits;  conditional E-value: 3.1e-135
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTC.TTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHC CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtege.saqsktrlaFaGLkfgevGsldyGrnygvvydvea 98 
                 Kdgnkldl+gkv++lhyfsd++s++gd++y+r+GfKGetq+ dqL gygqwEy+++ n++e++ +a+s tr++FaGLkfg++Gs+dyGrnygv+yd++a
  EHU00271.1  28 KDGNKLDLFGKVDGLHYFSDNDSSNGDQSYVRFGFKGETQVTDQLSGYGQWEYQAALNNSEAQgTADSYTRVGFAGLKFGDAGSFDYGRNYGVAYDIGA 126
                 9**************************************************************78889******************************* PP

                 TTTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS......SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CH CS
     Porin_1  99 wtdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedts.tnn.rnlkksngdgygvslsYeveGfalsvagayarsdrtak 195
                 wtdvlpefggdt+  +dnfm +r ng+atYrn+ FfGlvdg nfa+qyqgkn++++ t+  r++  +ngdg+g+s++Y+ + +++++++a  +sdrt++
  EHU00271.1 127 WTDVLPEFGGDTY-GADNFMFQRGNGMATYRNNGFFGLVDGWNFAVQYQGKNDNPTeTSGgRDVLGENGDGWGLSTTYDLG-SGFGIGAATFQSDRTNN 223
                 ************9.9***************************************9954458*******************9.8**************** PP

                 HC......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEE..........EEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETTST CS
     Porin_1 196 qklelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvg..........asgianktqnlevvaqyqfdfGlrPsiaYvqskgkdlegkk 284
                 q+    + +  lg+g+ka +++ glkYdanniylaa+Y+  +na  +g          a+g a k+ n e+vaqyqfdfGlrPs+aY++s g d+++ +
  EHU00271.1 224 QNG---NAPGILGRGDKAAAYTGGLKYDANNIYLAAMYTRAYNAISFGdstsgnqantAYGYADKADNWELVAQYQFDFGLRPSLAYINSRGTDVQN-W 318
                 995...679999*********************************************99**************************************.* PP

                 CCEEEEEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSC.CTSSTSC-EEEEEEEEEE CS
     Porin_1 285 gdndlvkyvdvGatYyFnKnmsayVdykinlldkdddk.elgistddivavglvyqF 340
                 g ++l kyvdvGatYyFnKnms+yVdykinlld++d + ++gi+tdd+v+vglvyqF
  EHU00271.1 319 GKQNLKKYVDVGATYYFNKNMSTYVDYKINLLDDNDFTkAAGINTDDVVGVGLVYQF 375
                 **********************************9955799***************9 PP

>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9  49.8   3.6e-20   3.3e-16       4     305 ..      12     346 ..       8     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.6e-20
     Porin_4   4 alaaaAgaAaAqs.......sVtlyGsidagvayvdgsatgssadgatgfdsgsrigftgsedldlGlglkasfeleagdngagtsg.....arqayvg 90 
                 al+aaAg+A+A++       +++l+G +d   + +d       +d+++g +s +r+gf+g +++ + l+   ++e +a+ n+  ++g      r  ++g
  EHU00271.1  12 ALLAAAGSANAAEiynkdgnKLDLFGKVDGLHYFSD-------NDSSNGDQSYVRFGFKGETQVTDQLSGYGQWEYQAALNNSEAQGtadsyTRVGFAG 103
                 89999****99999***************6555544.......45667778899******999998888778888885543222222233458888999 PP

     Porin_4  91 lsg.gfGkvtlGrqdgafdeagvdlafesgsladtgtalsgvsgsa.gfdsrdsnsiiyyspk.....fgGftagasyafgeddntnglagsvagdsdd 182
                 l+  + G++++Gr++g+++++g          +d+ + ++g + +a  f  ++ n+++ y+++      +G  ++++y+ g +dn +++ g+ +   ++
  EHU00271.1 104 LKFgDAGSFDYGRNYGVAYDIGAW--------TDVLPEFGGDTYGAdNFMFQRGNGMATYRNNgffglVDGWNFAVQYQ-GKNDNPTETSGGRDVLGEN 193
                 998899**************9983........33333333333222022234445554455444644478********8.5556655666665555668 PP

     Porin_4 183 ndafglgagyafggvglavaaaysqgdneada............dldawglgasvslggfklgasyadaendaaaaa..............adadlygv 255
                  d++gl+ +y++g+ g+ ++aa+ q+d ++++            +  a++ g +++ +++ l a y++a n+ ++++              ++ad++++
  EHU00271.1 194 GDGWGLSTTYDLGS-GFGIGAATFQSDRTNNQngnapgilgrgdKAAAYTGGLKYDANNIYLAAMYTRAYNAISFGDstsgnqantaygyaDKADNWEL 291
                 9**********985.99999999966666666667899*****99999999********************9999999********************* PP

     Porin_4 256 gasytvga.ltvgaaygnydd....agandadatsyglgatYnLskrtdlyaeya 305
                  a+y+++  l+ ++ay n ++    ++++ +  + + +gatY ++k+++ y+ y+
  EHU00271.1 292 VAQYQFDFgLRPSLAYINSRGtdvqNWGKQNLKKYVDVGATYYFNKNMSTYVDYK 346
                 ******65389*****99999889999*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2879.37
//
Query:       EHU00272.1  [L=51]
Description: hypothetical protein CKS_2131 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       142  (0.00792013); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 409.59
//
Query:       EHU00273.1  [L=37]
Description: hypothetical protein CKS_2130 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.054   12.8   0.1      0.055   12.7   0.1    1.0  1  MFS_Mycoplasma  Mycoplasma MFS transporter
        0.1   13.0   0.2       0.11   12.9   0.2    1.0  1  DUF2681         Protein of unknown function (DUF2681)


Domain annotation for each model (and alignments):
>> MFS_Mycoplasma  Mycoplasma MFS transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.2e-06     0.055     155     187 ..       2      34 ..       1      36 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-06
  MFS_Mycoplasma 155 ilfvlgyvlglfvlspfnKtiydrkrflvtlfl 187
                     i  +l++ lglfv++ +  ++  r r++vt +l
      EHU00273.1   2 IYIILAVALGLFVIGSYKTWQQRRHRHMVTTYL 34 
                     7788999**********************9885 PP

>> DUF2681  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   1.2e-05      0.11       3      34 ..       1      32 [.       1      36 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
     DUF2681  3 qlallvgliaavlllvaylswqlkkarkknak 34
                +++++++++  + ++  y+ wq ++ r    +
  EHU00273.1  1 MIYIILAVALGLFVIGSYKTWQQRRHRHMVTT 32
                589999999999999*********99976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 307.19
//
Query:       EHU00274.1  [L=346]
Description: ApbE family thiamine biosynthesis lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-80  267.9   0.3    1.1e-79  267.6   0.3    1.0  1  ApbE      ApbE family


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.6   0.3   6.1e-84   1.1e-79       1     257 [.      38     321 ..      38     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 267.6 bits;  conditional E-value: 6.1e-84
                 TTEEEEEEEE.........HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCT.S.S-EEE-HHHHHHHHHHHHHHHHTTTSS-TTTHHHHHHHCTTSGG.. CS
        ApbE   1 mgttvsitly..g......leaaieaelerlekllsryrpdSelsrlNra.k.kevkvspelaellkaaleiseltdgafdptvgplvklwgfgeeka. 88 
                 mgt+++++l+  +      l++ i+++l++ +++ls+++++S lsr+N++ + ++++vs+++a++++ al+i ++t ga+d+tvgplv+lwgfg++k+ 
  EHU00274.1  38 MGTVWRVSLAgvDetrkadLQQRIQQQLDADDAELSTWKATSVLSRFNQSrAtTPQPVSENMADIVTMALRIGKKTAGAMDITVGPLVNLWGFGPDKQp 136
                 9*******9754156677788***************************8874488****************************************9554 PP

                 .----HHHHHHHHTT.-GGGEEE........EESTT..-----TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC..-ECT-EEEEEE-TT.S.. CS
        ApbE  89 .rvpsaeeidaalalvgykkiel........lakkgpgmkLDlggiaKGyavdrvaellka.giksalvnlGGdiralG..pdgkpwrvgiedPr.a.. 172
                  ++p++++i+aa+al+g +++++        l+k+ pg+++Dl+ +++G+a+d +a+l+++ gi+++lv++GG ++  G  ++++pwrv+i++P+ +  
  EHU00274.1 137 vHIPDDQQIAAARALTGLQHLRViqgsngqwLQKDLPGLYVDLSTMGEGFATDHLARLMEQeGINNYLVSVGGAVLSRGmnAQNQPWRVAIQKPTdRen 235
                 888******************989999****************************************************987789**********6257 PP

                 SEEEEEEESSSEEEEEETTSSEEE..TEEEES-B-TTTSSB---SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHCCGGGTCTEE CS
        ApbE 173 ellavlslsddavaTSGdyeryfe..gkryhHiidprtgyPaesglasvtViads.alADalaTalfvlgeekalellekkeegveal 257
                 +++a ++l++ +++TSG+y++y+e  gkr +Hiidp+tg+P++++l+s+tVia++ ++AD++ T l+vlg eka++l+ k+  +++++
  EHU00274.1 236 AVQARVDLQGHGISTSGSYRNYYEldGKRLSHIIDPATGRPVDHKLVSATVIATTaMEADGWDTGLMVLGTEKAKALALKE--KLAVY 321
                 8999*****88************888**************************9755*********************9864..46665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2776.14
//
Query:       EHU00275.1  [L=213]
Description: alkylated DNA repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-53  180.4   0.0    5.3e-53  180.1   0.0    1.0  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
     0.0082   17.0   0.0      0.025   15.5   0.0    1.7  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.0   5.9e-57   5.3e-53      15     196 .]      34     210 ..      21     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 5.9e-57
  2OG-FeII_Oxy_2  15 aellrelleegpfrqptilggkrvsvqqtllgplgwatdgpgyrysekesvdakplspfpeallrlverlvkaagpegwspnaalvnfYrdgari 109
                      e++ ++++++pf ++ ++gg r+sv++t++g +gw td++gyryse++s+++++++++pe+++ l+++++++ag++ ++p+a+l+n+Y++ga++
      EHU00275.1  34 YEAIMTIAKSNPFEHRITPGGYRMSVAMTNCGDFGWSTDARGYRYSEQDSTHQRQWPAMPETFRLLARQAAEEAGFPAFNPDACLINRYEPGAKL 128
                     466777789************************************************************************************** PP

  2OG-FeII_Oxy_2 110 glHqDkeesaleapivSlSLGasatfrfgkesreeeiiailLesGdllvmggesrkayHgvprikkdtapeleleelrtrRinlTfR 196
                      lHqDk+e++l +pivS+SLG +a+f+fg+ +r+++ +++lLe+Gd++v+gg+sr  yHg+ + k + +p+     ++  R nlTfR
      EHU00275.1 129 TLHQDKDEKDLLQPIVSVSLGLPAVFQFGGFERSDQAQRVLLEHGDVVVWGGPSRLRYHGILPLKAGIHPL-----TGAFRYNLTFR 210
                     ***********************************************************************.....9*********9 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55     5e+03      76      91 ..      42      59 ..      11      62 .. 0.62
   2 !   15.5   0.0   2.7e-06     0.025       3      84 ..     119     194 ..     117     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.55
                    T.....EEE--B.-SS-EEEE CS
  2OG-FeII_Oxy_3 76 p.....HevlpvtkggeRlsl 91
                    +     H+++p   gg R+s+
      EHU00275.1 42 KsnpfeHRITP---GGYRMSV 59
                    03333499988...4577776 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.7e-06
                     EEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE....E..T-B--EEE..........---TT-EEEEE-..B-T.EEE--B.- CS
  2OG-FeII_Oxy_3   3 vlrygegqeykpHvDnfekeegsgqrrltvllyLnekes..eeGGelelyekdkeavkikpkkgrlvlFesdellp.Hevlpvtk 84 
                     ++ry++g +++ H+D+   e++  q +++v l L    +  + GG    +e++++a+++  ++g++v++   ++l+ H++lp ++
      EHU00275.1 119 INRYEPGAKLTLHQDKD--EKDLLQPIVSVSLGLP---AvfQFGG----FERSDQAQRVLLEHGDVVVWGGPSRLRyHGILPLKA 194
                     79*************86..677799*********4...3468999....555677888889********96544445**999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1586.12
//
Query:       EHU00276.1  [L=528]
Description: membrane and ATP-binding components of an ABC superfamily predicted multidrug transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-28   98.3   0.0    8.7e-28   97.5   0.0    1.4  1  ABC_tran        ABC transporter
    1.1e-07   32.0   0.6     0.0076   16.1   0.1    2.3  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      2e-05   25.1   0.1    4.6e-05   23.9   0.1    1.6  1  AAA_16          AAA ATPase domain
    0.00015   21.6   5.5    0.00015   21.6   5.5    1.6  2  ABC_membrane    ABC transporter transmembrane region
     0.0028   17.1   0.1        2.5    7.5   0.0    2.4  2  SMC_N           RecF/RecN/SMC N terminal domain
     0.0035   17.1   0.1     0.0098   15.6   0.1    1.8  1  AAA_29          P-loop containing region of AAA domain
     0.0037   17.0   0.0      0.022   14.5   0.0    1.7  2  AAA_15          AAA ATPase domain
  ------ inclusion threshold ------
      0.038   13.3   0.0      0.071   12.4   0.0    1.3  1  Zeta_toxin      Zeta toxin
       0.07   13.1   0.1       0.14   12.2   0.1    1.5  1  AAA_5           AAA domain (dynein-related subfamily)
      0.087   12.4   0.2       0.42   10.1   0.1    2.1  2  AAA_25          AAA domain
      0.093   12.6   0.0       0.26   11.2   0.0    1.8  1  APS_kinase      Adenylylsulphate kinase
        0.1   12.8   0.0       0.35   11.0   0.0    1.9  2  AAA_33          AAA domain
       0.12   12.2   0.1       0.27   11.1   0.1    1.5  1  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.16   12.5   0.0       0.25   11.8   0.0    1.4  1  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   6.8e-31   8.7e-28       3     136 ..     341     477 ..     339     478 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 6.8e-31
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...HHHTCHHHHHHHSTTGGTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...esdeeiekalsklglkelk 98 
                  v+l+l++ge+v ++G nG+GKStL++ll+gl++p++G + +dg++++  ++  +r++++ ++ + +lf++l + ++   +s ++++ +l+kl+++++ 
  EHU00276.1 341 PVNLTLRRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGFLVIDGQPVDAGDRDAWRQHFSAVFTDVHLFDRL-IDSQgepASPARVQLWLEKLKMQDKL 438
                 599*********************************************************************.888888999**************944 PP

                 CBGESTTS..GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  99 dtvvkssp..ssLSgGqkqrvalarallkkpkllllDEpt 136
                 +   +++    +LS+Gq +r+al  a+++++++lllDE  
  EHU00276.1 439 KIE-GNKIlnLQLSKGQSKRLALLLAVAEQRDVLLLDEWA 477
                 333.2333569***************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.9e-06    0.0076       2      44 ..     352     392 ..     351     421 .. 0.75
   2 !   14.1   0.0   2.4e-05     0.031     231     299 ..     444     510 ..     429     513 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.9e-06
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44 
                  +liG NgsGKS+L  +l +l   ++ + +l ++ ++    + 
  EHU00276.1 352 VFLIGGNGSGKSTLAMLLTGLY--QPQSGFLVIDGQPVDAGDR 392
                 68****************9998..4555555555555555555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.4e-05
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTHSp 299
                 ++   +lS G+ + lall+a+++++   ++ll+DE  +  +P++ r ++ ell +l++ g  v++ +H+ 
  EHU00276.1 444 KILNLQLSKGQSKRLALLLAVAEQR---DVLLLDEWAADQDPHFRRVFYrELLPALQAAGKTVFAISHDD 510
                 5566789******************...9********************777755555699*******96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   3.6e-08   4.6e-05      23     142 ..     348     474 ..     343     506 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.6e-08
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql.esa...ipysa.laqalareellrqlldeaesaeleawrekleeala......avp 109
                 r+elv+l+G  G+GKs+l+  l   ++ + g++++ g+ ++  +++    ++sa ++++  +++l+   +++a+ a ++ w ekl+ + +         
  EHU00276.1 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQsGFLVIDGQPVDAgDRDawrQHFSAvFTDVHLFDRLIDSQGEPASPARVQLWLEKLKMQDKlkiegnK-- 444
                 4589***************999987777745888********6555677777777888888888888888889999999999988776554444331.. PP

      AAA_16 110 elagaea......srllellkrllallsrderplvlvlD 142
                              +     l+ lla +++ +   vl+lD
  EHU00276.1 445 ------IlnlqlsKGQSKRLALLLAVAEQ-R--DVLLLD 474
                 ......13322212222222222233333.2..356666 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   5.5   1.1e-07   0.00015      37     189 ..      46     195 ..      12     201 .. 0.72
   2 ?   -3.9   0.9       6.5   8.3e+03     131     149 ..     245     263 ..     235     277 .. 0.46

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.1e-07
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH CS
  ABC_membrane  37 tealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvggl 133
                   t  +  ++ ++l+ +++  +++l+++  l+++g + + rlr +++k+il   ++ ++++++ +ll+ lt+d++ +  +   +l  ++q  ++ +g+ 
    EHU00276.1  46 T--SLSVLPAFLAQVALLMAVTLASQLSLTWLGHQFVWRLRGEFIKRILDTRVERIEQTDSAQLLAGLTSDIRAIT-LAFVRLPELIQGSIITLGSA 139
                   2..333444555555555555666666669*******************************************985.55666777777777778888 PP

                   HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  ABC_membrane 134 ivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsg 189
                   +++ +l++k+ lv+ + l + ++  +++ +++ +   k  +  +++++  + +++g
    EHU00276.1 140 LYLAWLSPKMLLVTSGWLAVTLVGGWMLVSRFYQHMAKLREVEDNLYRDYQTVIEG 195
                   888899*********99999999999888888777777777777776666666665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.5
                   HHHHHHHHHSHHHHHHHHH CS
  ABC_membrane 131 gglivmfylgwkltlvlla 149
                   g+++++f++  +l ++ +a
    EHU00276.1 245 GAIGMVFFMANSLGWANTA 263
                   3333333333333333222 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0025       3.2      26      40 ..     351     365 ..     341     369 .. 0.86
   2 !    7.5   0.0     0.002       2.5     130     210 ..     443     521 ..     408     526 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0025
                 EEEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnl 40 
                 + +++G NGSGKs l
  EHU00276.1 351 LVFLIGGNGSGKSTL 365
                 6799*********87 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.002
                 TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHH.HHHHHCTT.SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvae.llkekskn.aQfivislreemlekadklvg 210
                  +i   +LS G+ +   laLl+A+ + +   + llDe +a  D + ++ + + ll + +     ++ is++++ + +ad+l g
  EHU00276.1 443 NKILNLQLSKGQSK--RLALLLAVAEQRD--VLLLDEWAADQDPHFRRVFYReLLPALQAAgKTVFAISHDDHYFIHADRLHG 521
                 3444449*****98..6889999987665..689*********9988887651555544444789999999999999999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.6e-06    0.0098      18      38 ..     345     365 ..     334     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.6e-06
      AAA_29  18 eidlkgatlltGpsGsGKSTl 38 
                 ++++ + ++l+G +GsGKSTl
  EHU00276.1 345 TLRRGELVFLIGGNGSGKSTL 365
                 555455999***********9 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-05     0.022      23      50 ..     350     376 ..     342     393 .. 0.80
   2 ?   -0.9   0.0      0.84   1.1e+03     288     367 ..     441     511 ..     418     512 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
      AAA_15  23 eeltvliGkNnsGKSsilealdlFlnnk 50 
                 e l +liG N+sGKS+++++l  + + +
  EHU00276.1 350 E-LVFLIGGNGSGKSTLAMLLTGLYQPQ 376
                 3.89****************98777655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.84
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSph 367
                 +++++   + + G++  l l+l  + ae++       ++ll++E  a + p + +v+++ l+ +++   + v+  +H +h
  EHU00276.1 441 EGNKILNLQLSKGQSKRLALLL--AVAEQR-------DVLLLDEWAADQDPHFRRVFYRELLPALQAAGKTVFAISHDDH 511
                 5555555566666666665555..445566.......7799999999999999999999999999988888888888877 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.071      17      51 ..     350     384 ..     342     387 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrldp 51 
                  l++l G+ G+GKs+la ll+   ++q++++++d+
  EHU00276.1 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGFLVIDG 384
                 689****************************9996 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00011      0.14       2      26 ..     352     377 ..     351     385 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                 EEEE--SSSSHHHHHHHGGGGB.S-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nre 26 
                 v+L+G  G+gKs+la+ l  ++  ++
  EHU00276.1 352 VFLIGGNGSGKSTLAMLLTGLYqPQS 377
                 89****************99996444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00033      0.42      30      53 ..     346     369 ..     341     372 .. 0.90
   2 ?   -2.4   0.0       2.3   2.9e+03      38      52 ..     493     507 ..     490     508 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
      AAA_25  30 lpagelallaGapgtGKttlaldl 53 
                 l++gel+ l+G  g+GK+tla+ l
  EHU00276.1 346 LRRGELVFLIGGNGSGKSTLAMLL 369
                 789******************866 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
      AAA_25  38 laGapgtGKttlald 52 
                 l + +++GKt++a++
  EHU00276.1 493 LPALQAAGKTVFAIS 507
                 6678899****9986 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.26       2      41 ..     349     387 ..     348     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41 
                 g  v+l G  gsGKst+a+ l   L + +    ++dG+ v
  EHU00276.1 349 GELVFLIGGNGSGKSTLAMLLT-GLYQPQSGFLVIDGQPV 387
                 6789***************997.78888889999999877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.35       1      19 [.     351     369 ..     351     431 .. 0.91
   2 ?   -2.4   0.0       3.9   4.9e+03       7      18 ..     496     507 ..     496     516 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
      AAA_33   1 lvllvGlpGsGKstlaerl 19 
                 lv+l+G +GsGKstla  l
  EHU00276.1 351 LVFLIGGNGSGKSTLAMLL 369
                 89*************9866 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.9
      AAA_33   7 lpGsGKstlaer 18 
                 l+++GK+ +a +
  EHU00276.1 496 LQAAGKTVFAIS 507
                 579*****9966 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00021      0.27       4      28 ..     350     374 ..     347     381 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfd 28 
                      l++l+G  G+Gkstl   lt  ++
      EHU00276.1 350 ELVFLIGGNGSGKSTLAMLLTGLYQ 374
                     589*************999998776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.25      20      39 ..     350     369 ..     333     469 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                  l+ ++G NG+GK+T+   +
  EHU00276.1 350 ELVFLIGGNGSGKSTLAMLL 369
                 588999*********97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3554.92
//
Query:       EHU00277.1  [L=67]
Description: hypothetical protein CKS_2125 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.26   11.3   0.0    1.3  1  Bromo_TP  Bromodomain associated


Domain annotation for each model (and alignments):
>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.5e-05      0.26      43      73 ..      33      63 ..      29      67 .] 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHTTSS-SS--HHHHHHHHHHTT- CS
    Bromo_TP 43 lgeqaksfaehagRseptlkDvvltLqelgi 73
                + ++a++++++ +R+   +  +v++L++++i
  EHU00277.1 33 FFRLASQWCDRGARISKGQHHFVVSLKNFAI 63
                6689*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 531.46
//
Query:       EHU00278.1  [L=466]
Description: putative transport [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-39  133.1   1.8    2.7e-38  131.6   1.8    1.7  1  MS_channel  Mechanosensitive ion channel
  ------ inclusion threshold ------
       0.14   11.1   5.0       0.21   10.5   5.0    1.2  1  MFS_1       Major Facilitator Superfamily
        0.3   10.1   3.3       0.56    9.2   2.9    1.5  2  Atg14       Vacuolar sorting 38 and autophagy-related subunit


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   1.8   4.5e-42   2.7e-38       5     201 ..     142     385 ..     139     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.5e-42
                 HHHHHHHHHHHHHHTTT--.SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESS..SEEEEEEEE-SSEEEEEETTSEEEEEEHHH CS
  MS_channel   5 kiliivvgilivlsllgvn.vsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveig..dieGtVediglrttkirtfdgrivtiPnss 100
                 kil+ ++  +++l  +  + +++++++lGa++++l+l+++ +++ lva i+l+ ++ +++GD++e++  +i+G+V+di l t++ir++d+++  +P+++
  EHU00278.1 142 KILVHIISAIMILAIMSNKsPAIIISSLGAVAAVLMLVFQHTLLPLVANIQLSSNDVLQLGDWIELPanNISGEVIDIALHTITIRNWDNTLSRVPTKT 240
                 78999999999999999988***********************************************99****************************** PP

                 HHTS-EEESSS...SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-T..........................................TS- CS
  MS_channel 101 lvtsnieNlsr..esgtrrikvsigvtyssdvkklekvleelkealkekpevlk..........................................dke 155
                 ++t++ +N++   +sg+rri +s+ ++ +s+++ +  +le + ++   ++++ k                                          d+ 
  EHU00278.1 241 FLTETYTNWQAmfSSGARRIMRSFYLDQTSIRFVDHAMLEPMVQVRGISEQLSKlmdgrelsavgdrwfvengmtnlmvfrhyltawltqredihkDMY 339
                 ****************************************99999999999999********************************************* PP

                 EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHHH CS
  MS_channel 156 llvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkilee 201
                   v+ +++++++l++e+++f+ +v++ +y+++qs+i++ i +i + 
  EHU00278.1 340 IVVRSLKPSAEGLPIEIYCFTSSVLWVDYENTQSAIFEYIYAIANV 385
                 **************************************99888765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.0   3.5e-05      0.21     156     294 ..      25     181 ..      17     196 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.5e-05
       MFS_1 156 ilaivsllafvlfllllpeepperkrkspkeee........kgtgpaplvpawkallkdpvl..w..illialllfffgfsglltllplylqevlgls. 241
                 +l +++l+a  l+  +++++ +++  +s+ +           + + ++++p+++  +  +++  +   llia+ ++  +  +++++l l+++evl +  
  EHU00278.1  25 VLIVAGLVAH-LICKFFVVRVVRKVFFSSHKNQvpldkdvrLSEKLSNFIPVITVYFLLQFMpdLpeHLLIAIKTI--CGILFMVYLSLFFNEVLEIVn 120
                 3334444443.33366655555555555555545555666666677777778888888887744256444444444..444566666666677777777 PP

       MFS_1 242 ...............glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglall 294
                                g++++g    l+ +++ai+  +++ +s++    ++++++ l++++a+l+l++ 
  EHU00278.1 121 isyvkkskrknhsikGYIQVG--KILVHIISAIM--ILAIMSNK---SPAIIISSLGAVAAVLMLVFQ 181
                 77999999999**********..***********..******99...567777777777777777664 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.9   9.3e-05      0.56     176     248 ..     123     199 ..     112     263 .. 0.73
   2 ?   -2.4   0.0      0.32   1.9e+03     162     187 ..     289     314 ..     257     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 9.3e-05
       Atg14 176 yergkwvfskngeseesytIgg......iplpdlrdlnafpaeeIsasLsyiaqLlaLvshyLsirLPaeltlphscqp 248
                 y++    ++kn + + +++ g       +++++l  +++ ++  I +sL+ +a  l+Lv + + ++L a+++l++++  
  EHU00278.1 123 YVKK--SKRKNHSIKGYIQVGKilvhiiSAIMILAIMSNKSPAIIISSLGAVAAVLMLVFQHTLLPLVANIQLSSNDVL 199
                 3333..44566778888888887767766777777788899999*******************************9974 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.32
       Atg14 162 cselaklyglrrtsyergkwvfskng 187
                 +++l+kl++ r+ s ++++w+++  +
  EHU00278.1 289 SEQLSKLMDGRELSAVGDRWFVENGM 314
                 68999999999999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3414.71
//
Query:       EHU00279.1  [L=504]
Description: alpha-N-arabinofuranosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-39  133.9   0.0    9.1e-39  133.3   0.0    1.3  1  Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha-L-AF_C  Alpha-L-arabinofuranosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   5.1e-43   9.1e-39       1     168 []     289     494 ..     289     494 .. 0.93

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 5.1e-43
                   EEEEE--S-..S................SS------HHHHHHHHHHHHHHHHHTTT--EEEES-SBSTT-.....SEEEETTE.EEE-HHHHHHHHH CS
                   xxxxxxxxx..x................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C   1 gEyavwyds..p................glleqqntledAlaeAafltglernaDvVkmasyAplvnviaatqWspdliwdngkvvgtpsYyvqklf 79 
                   +E+++w+ +  p                +lleq++t+ dAl  + ++ +l++++D+Vkmas+A+lvnvia     p+ + ++g+++++++Y++++++
    EHU00279.1 289 DEWNIWSIEgePwqdyftdpanryqeapPLLEQSYTFLDALTFGGLMCSLLNHCDRVKMASLAQLVNVIA-----PIFTRPGGEAIRQTIYWPFQMV 380
                   9*****7667636678888899999999******************************************.....********************** PP

                   HHS--SEEEEEEEE--EEEEEEEET........................SS--EEEEEEETT-.-SEEEEEEEEE-.STT----SSSTTSSEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C  80 sknaggtvlpvelespkyeikgege........................aeeavevevdleglekaskaevtvlsg.dlkaeNtfenpekvvpkeek 151
                   s++ +g++l+   + p+ ++  +++                        +++a++v++ l+g+++ + ae+ +l+g +l+a+Ntf +p++vvp++++
    EHU00279.1 381 SHCGRGHALRYFANVPTLNTVHGETrqiqsaavyneekqqiaffalnmhEHDAADVAFMLDGFGEGTIAEHSILAGyALDAKNTFAQPDNVVPTSRT 477
                   ****************9955544445888999999*************97779******************************************** PP

                   E.EE-E..EEEEE-TTE CS
                   xxxxxxxxxxxxxxxxx RF
  Alpha-L-AF_C 152 lakvsggkftytlpayS 168
                   l++++  ++++tlp++S
    EHU00279.1 478 LTEAERRQMQVTLPPLS 494
                   *9999999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3720.22
//
Query:       EHU00280.1  [L=175]
Description: hypothetical protein CKS_2118 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.02   15.0   0.0      0.046   13.9   0.0    1.5  1  HTH_17          Helix-turn-helix domain
      0.024   14.8   0.2      0.072   13.2   0.0    1.9  2  HTH_28          Helix-turn-helix domain
       0.12   12.3   0.0       0.27   11.1   0.0    1.6  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.7e-06     0.046      12      30 ..      13      30 ..       9      36 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.7e-06
      HTH_17 12 gvsrstvyrlirrgelpaa 30
                gvsr+ vy++i +ge+ ++
  EHU00280.1 13 GVSRQAVYDWIEKGEI-VM 30
                9**************9.65 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.2e-05     0.072      18      34 ..       8      24 ..       3      27 .. 0.86
   2 ?   -2.5   0.0      0.99   5.9e+03      14      23 ..      93     102 ..      88     102 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
      HTH_28 18 aArelgisrrtvyrWik 34
                 A++ g+sr+ vy+Wi 
  EHU00280.1  8 YAKHRGVSRQAVYDWIE 24
                599************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.99
      HTH_28  14 svreaArelg 23 
                 +vr+aA el+
  EHU00280.1  93 RVRDAASELN 102
                 7888888875 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.5e-05      0.27      10      33 ..       4      26 ..       1      33 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkk 33
                    + +a A++ gvs+qaV++W++ k+
      EHU00280.1  4 SKSAYAKHRGVSRQAVYDWIE-KG 26
                    67889**************96.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1269.80
//
Query:       EHU00281.1  [L=226]
Description: nudix hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00072   19.6   0.0     0.0016   18.4   0.0    1.5  1  DUF2213   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2213  Uncharacterized protein conserved in bacteria (DUF2213)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     9e-08    0.0016      35     155 ..      41     167 ..      30     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9e-08
     DUF2213  35 dpdriirvlrdpdelfkkealasfegkpvtdeHpee.evtaenwkelavGtvgrdvrfegeylvadllitdaeaiaaiesgklrelSagYeadldmtpg 132
                 +++   +v+rdp    +++ l+ + g+pv+++Hp+  +++a  +++ +vGtv       g+ + a   i+ +e+i+ ie++k   +S + ++ +  ++g
  EHU00281.1  41 RANDKEHVWRDPRIYLNAQFLERCVGVPVIIDHPQGgKLDAVGTESRIVGTV-MLPYLRGDEVWAVCRIYGKEIIDYIEKEK-DGISTSPSVIFCGDSG 137
                 5666778999999999999***************7778888888********.89999************************.9999875555444444 PP

     DUF2213 133 eyd.......GekydavqrnirgnHvAlVe 155
                  +d        +++ ++     ++HvAlV+
  EHU00281.1 138 CADvpnatgdDNNFLIEGVPYLIDHVALVP 167
                 333000000022333333344567777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1842.62
//
Query:       EHU00282.1  [L=190]
Description: nudix hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.038   13.7   0.0      0.051   13.3   0.0    1.3  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.9e-06     0.051     102     159 ..      75     130 ..      54     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-06
                 HHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHH CS
  His_Phos_1 102 eawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarll 159
                  a  ++ +  +p  gE+  d ++R+   +++la++ ++ ++  Vs  +++ +l  ++ 
  EHU00282.1  75 VAIGKRAP--APFSGEKAMDYRKRALMGIQKLAKKFHDVNIRAVSDSATLSVLEDQIY 130
                 44444433..5777************************************99977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1473.39
//
Query:       EHU00283.1  [L=339]
Description: hypothetical protein CKS_2115 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2452.00
//
Query:       EHU00284.1  [L=57]
Description: hypothetical protein CKS_2114 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 509.10
//
Query:       EHU00285.1  [L=320]
Description: ferrochelatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-101  339.5   0.0   1.9e-101  339.3   0.0    1.0  1  Ferrochelatase  Ferrochelatase
    3.5e-05   24.1   0.0     0.0021   18.3   0.0    2.3  2  CbiX            CbiX
  ------ inclusion threshold ------
      0.065   11.4   0.0      0.089   11.0   0.0    1.1  1  Glyco_hydro_70  Glycosyl hydrolase family 70


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.3   0.0  3.2e-105  1.9e-101       1     314 [.       4     317 ..       4     320 .] 0.98

  Alignments for each domain:
  == domain 1  score: 339.3 bits;  conditional E-value: 3.2e-105
                     .EEEEEEE----SSC..CCHHHHHHHHCT-TTTS-S-.TTTHHHHHHHHHHHHHHHHHHHHHHT..TSS-SHHHHHHHHHHHHHHHHHHH---EE CS
  Ferrochelatase   1 ktavLLlnlGgPekp..edvrpflenllsdrrvielp.lllqkllaklilkerlekvaekYeki..gggSPlneitrkqaealekelaergidvk 90 
                     k++vL++nlG+P++p   +v+ fl+++l+d rv++lp +l+ ++l+++i + r+++va+ Y++i  ++gSPl++++ +qa+ale+  +     ++
      EHU00285.1   4 KQGVLIVNLGTPKEPttAAVKTFLSKFLHDYRVVDLPrILWCPILHGVIIPLRAKRVAKLYSSIwmDEGSPLMVYSVRQARALEALTG-----MP 93 
                     68**********************************************************************************9997.....8* PP

                     EEEEESSSSSBHHHHHHHHHCTT-SEEEEEES-SS--TTTHHHHHHHHHHHHHH..TT-SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-HC.C CS
  Ferrochelatase  91 vylamrywePsiedaleelkadgvervvvlplyPqysasttgssleeleralkk..kreapevrvirqfydhpgyiealaesikealeelpeekk 183
                     v+l+m+y+ePsi  a+++l a+gv++++v+plyPq+s+st++s+++ + r+l+   +r +p +++i++++dhp+yi+al +s+ e++e +  + +
      EHU00285.1  94 VELGMSYGEPSIGGAIDRLLAKGVDKIIVIPLYPQFSSSTVSSVFDSVSRHLQTmkNRYTPAINFINDYADHPAYIDALKTSVLESFEAN--GVP 186
                     ****************************************************7666999*****************************98..889 PP

                     -EEEEEEE--BHHHHT.TT-SHHHHHHHHHHHHHHHTTT-S.-EEEEEE---SSS-BSSSBHHHHHHHHCCC.-S-EEEE-TT-SS--HHHHIII CS
  Ferrochelatase 184 akllfsaHglPeravkkkgdpYqqqveetarlvaealglke.evelayqSrvGpeeWlePdtddtleelaekgvkaivvvpigFvsDhlEtleel 277
                     ++ll+s+Hg+P r+  ++gd+Yq+++  t++l+ +al++++ +v +++qSr+G+e+Wl+P+td+t+++l+++gvk++ v+++gF++D+lEtleel
      EHU00285.1 187 DALLVSYHGIPVRFS-NEGDKYQERCALTTKLLTDALNMPSlKVVMTFQSRFGREPWLTPYTDETIKNLPAEGVKSLQVISPGFAADCLETLEEL 280
                     **************8.67***************************************************************************** PP

                     IIIIITTSTT..CCCEEE----TT-HHHHHHHHHHHH CS
  Ferrochelatase 278 diearelaeeaggekfvrvptlndspafiealadlve 314
                     d+++re++ +agg++f+++p+lnd+p +ie+l++l+e
      EHU00285.1 281 DEQNREIFMHAGGTSFTYIPALNDKPVHIEMLRQLAE 317
                     *********************************9986 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.6e-07    0.0021      15      60 ..      82     125 ..      76     173 .. 0.85
   2 ?    3.5   0.0     0.015        90      37     105 ..     244     312 ..     241     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.6e-07
                 HHHHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEE CS
        CbiX  15 laeelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPl 60 
                  a++l++  +  pvelg   + eps+  a+++l ++gv++i+v+Pl
  EHU00285.1  82 QARALEALTG-MPVELGM-SYGEPSIGGAIDRLLAKGVDKIIVIPL 125
                 4788899888.9*****8.99************************8 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.015
                 ECCSCCSSHHHHC-SBSEE.EEEEESSSSSHHHHTHHHHHCT--SSSS-TTEEEEE---CCCSCCHHHHH CS
        CbiX  37 epsleealrelaeqgvkri.vvvPlflfaGvhvkeDIpeeleeaeeahpkdveieytepLGthplvaevl 105
                 +p+ +e++++l ++gvk   v+ P f ++   + e + e+ +e+  + + +++++y ++L ++p  +e+l
  EHU00285.1 244 TPYTDETIKNLPAEGVKSLqVISPGFAADCLETLEELDEQNREIFMHAG-GTSFTYIPALNDKPVHIEML 312
                 68999*************98999***99998888878777777777777.88888888888887766665 PP

>> Glyco_hydro_70  Glycosyl hydrolase family 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.5e-05     0.089     598     650 ..     123     175 ..      98     194 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.5e-05
  Glyco_hydro_70 598 felapqyvsstdgsfldsiiqnGyaftdrydlglskpnkyGtaddlvdaikal 650
                     + l pq+ sst +s +ds+ +   ++++ry  +++  n y      +da+k+ 
      EHU00285.1 123 IPLYPQFSSSTVSSVFDSVSRHLQTMKNRYTPAINFINDYADHPAYIDALKTS 175
                     45789************************************999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2436.00
//
Query:       EHU00286.1  [L=73]
Description: hypothetical protein CKS_2546 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 583.63
//
Query:       EHU00287.1  [L=179]
Description: putative MFS transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-25   89.5  11.4    1.9e-25   89.2  11.4    1.0  1  MFS_3     Transmembrane secretion effector
    7.6e-18   64.6  18.2    8.4e-18   64.4  18.2    1.0  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2  11.4   2.2e-29   1.9e-25       7     173 ..      13     178 ..       9     179 .] 0.97

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 2.2e-29
       MFS_3   7 lrqkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwl 105
                 l+++ F + W+a   s++G  + +va+sW +  i+ s ++  ++     LP +ll+++aG laD+fdrR++++++ql+  ++ + l+ l++l   +   
  EHU00287.1  13 LQHRSFVAFWLARTCSSFGFQMLSVAVSWQIYAITHSAMALGMIGLMQFLPSVLLALPAGHLADQFDRRRIVVIGQLIEWAALLGLVALTLLHWADKLE 111
                 78999********************************************************************************************** PP

       MFS_3 106 llaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafa 173
                 + +l +li++  al  Pa   +++ lv+   +  A+a +svg   a  vGP lgG+l  ++G+ ++++
  EHU00287.1 112 IWGLVFLISLAKALEWPAITSMLPALVPPPILARAMAASSVGGQAAVIVGPTLGGLL-YIAGPEVVYG 178
                 *******************************************************86.5789998887 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4  18.2   9.4e-22   8.4e-18       2     155 ..      22     178 ..      21     179 .] 0.87

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 9.4e-22
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa...sslw.lllvlrvlq 95 
                 +la  +s++++ +l++a+++ +    + s+ ++g++  + +l +++++lp+G+l+d f rrr++++g l+  ++ll l+ ++         ++ l +l 
  EHU00287.1  22 WLARTCSSFGFQMLSVAVSWQIYAITH-SAMALGMIGLMQFLPSVLLALPAGHLADQFDRRRIVVIGQLIEWAALLGLVaLTllhWADKlEIWGLVFLI 119
                 89999**************96655555.9999******************************9999999988883333332244534444699999*** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfy 155
                 +l+ ++ +pa+ +++ +++p++  +ra++  s+g ++++i+gp lggll+  +g ++v+ 
  EHU00287.1 120 SLAKALEWPAITSMLPALVPPPILARAMAASSVGGQAAVIVGPTLGGLLY-IAGPEVVYG 178
                 **************************************************.888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1469.78
//
Query:       EHU00288.1  [L=207]
Description: putative MFS transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-13   47.8  11.6    7.9e-13   47.6  11.6    1.0  1  MFS_3     Transmembrane secretion effector
    2.7e-06   26.6  16.0    6.3e-06   25.4  15.9    1.6  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6  11.6   8.8e-17   7.9e-13     210     402 ..       9     202 ..       3     207 .] 0.83

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 8.8e-17
       MFS_3 210 glRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslw 308
                 g+Rf +  ++   v+    lF +      aLLP+ a+d l++++   G+l ga  vGA+l ++ lsr +   +   ++  +++++ l  l  al+++lw
  EHU00288.1   9 GVRFIRERKDALGVI-SLDLFAVLLGGATALLPVFAQDILHTGPWGLGLLRGAPSVGALLVGVWLSRHKLEKHVGMIMFGSVAGFGLATLLFALSTKLW 106
                 666666555544333.4456777778889************************************9988888888999999999*************** PP

       MFS_3 309 vavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvt.laLlaaaaalllaaaillll.klpeleasd 402
                 + +l+l+ +G+  ++++    + vql +P+ ++gR+ av    ++ +  +G +  G +a  +++   a++ +  +l+++++ ++l+ +l+++++ +
  EHU00288.1 107 LSLLALAALGGFDMVSMVIRGALVQLDTPDTMRGRVNAVNAIFINTSNQLGEFESGLLAAWMGAVpAAVIGGVGTLVVVGLWMMLFpNLRKRQKLE 202
                 ************************************************************998650555555556666666555542688877765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  15.9     7e-10   6.3e-06      39     184 ..      55     204 ..      25     207 .] 0.71

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7e-10
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrr....vlllglllfalglllll.fa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagf 130
                 +l   + +v++l++G++  r+   +    +++ ++++f+l+    l fa  + lwl l++ +  G +  +++ + +al+   +p++ rgr++++ ++++
  EHU00288.1  55 GLLRGAPSVGALLVGVWLSRHKLEKhvgmIMFGSVAGFGLA---TLlFAlsTKLWLSLLALAALGGFDMVSMVIRGALVQLDTPDTMRGRVNAVNAIFI 150
                 44444667899999999999975554012444444444444...222445599**66666666666667****************************** PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrksp 184
                 + +  lg   +glla++ g   + +i ++ +l++ v l+++l+p  +++ k +++
  EHU00288.1 151 NTSNQLGEFESGLLAAWMGAVPAAVIGGVGTLVV-VgLWMMLFPNLRKRQKLENE 204
                 ***************9988655555555555555.55999**9999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1507.06
//
Query:       EHU00289.1  [L=335]
Description: transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-86  289.5  31.9    3.1e-86  289.2  31.9    1.0  1  FecCD         FecCD transport family
  ------ inclusion threshold ------
      0.053   13.8   0.1      0.053   13.8   0.1    3.1  3  DUF1294       Protein of unknown function (DUF1294)
       0.71    9.1  10.6       0.51    9.6   8.5    2.0  2  Peptidase_U4  Sporulation factor SpoIIGA
        3.8    7.6   5.4        2.3    8.3   1.0    2.8  3  DUF543        Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.2  31.9   6.9e-90   3.1e-86       1     312 []      18     332 ..      18     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.2 bits;  conditional E-value: 6.9e-90
       FecCD   1 llllllllslllgavkispsevfeallgka...dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllg 96 
                 ll++l+l+s + g+v++s+++v++al   +   +++   iv++lrlpr+l+a+++Ga+La+ GallQt+trN LadP + G+ssga++gavl+++ +  
  EHU00289.1  18 LLAILMLISTAEGTVSLSLTQVLSALDMADapvSEMITRIVIDLRLPRTLLAVMTGAGLAIVGALLQTTTRNDLADPFLFGLSSGASAGAVLVITRFGD 116
                 6899*********************98777888899999********************************************************9999 PP

       FecCD  97 slslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllll 195
                  ls+ +lp+aaf+g+l++++ v+ll + +k+ s + liL+G+avs+l++a+ts+l++  +++a++s++fw lG l+ asw+++  +lv l+ll+ +++l
  EHU00289.1 117 RLSALTLPVAAFAGGLFSAAAVMLLFHFKKQRSAEHLILCGLAVSFLFGAVTSYLIFSGDQRAASSVMFWSLGGLGLASWHNLPYALVSLALLTGFVAL 215
                 *************************************************************************************************** PP

       FecCD 196 larkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpv 294
                   r+ld l  g++tA slG++v+r+r+ ++l++al+ta+ val+G+igFvGL+vPh++r ++g +hr l+pl+al+Ga+ll++ d+++r+ll+p+elp+
  EHU00289.1 216 RGRQLDGLLAGEQTALSLGIHVNRLRIEVFLCCALATALLVALTGVIGFVGLMVPHLCRHVTGVKHRLLIPLCALWGAILLCAGDIASRTLLAPQELPI 314
                 *************************************************************************************************** PP

       FecCD 295 givtaliGapffiylllr 312
                 gi+ta iG+ f i+ l+r
  EHU00289.1 315 GIITAGIGGGFVIVQLMR 332
                 ************998876 PP

>> DUF1294  Protein of unknown function (DUF1294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.2e-05     0.053      20      52 ..     116     148 ..     111     150 .. 0.90
   2 ?   -3.7   0.4       3.3   1.5e+04      27      38 ..     203     214 ..     202     215 .. 0.81
   3 ?   -1.6   0.3      0.77   3.4e+03      27      40 ..     255     268 ..     251     277 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
     DUF1294  20 wRipEktLlllallgGslGallgmrlfrHKtkk 52 
                  R +  tL + a++gG + a + m lf++K ++
  EHU00289.1 116 DRLSALTLPVAAFAGGLFSAAAVMLLFHFKKQR 148
                 5888899***********************986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.3
     DUF1294  27 LlllallgGslG 38 
                 L+ lall G+++
  EHU00289.1 203 LVSLALLTGFVA 214
                 788999999875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.77
     DUF1294  27 LlllallgGslGal 40 
                 L++l+ + G++G +
  EHU00289.1 255 LVALTGVIGFVGLM 268
                 33333344444443 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.5   0.00011      0.51      34     125 ..      98     210 ..      68     268 .. 0.72
   2 ?   -1.4   0.3      0.25   1.1e+03      45      45 ..     263     263 ..     223     332 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
  Peptidase_U4  34 rlllaAllGalyvvlvlflpklesillsillki...lvsllmvliafgpkslkeflkalllfylvsfllgGilfalsyll...lkskn......... 115
                    l  +A +Ga++ v++ f  +l+  l+ +++ +   l+s++ v++ f +k+ +   + +l+ ++vsfl+g +   l++                   
    EHU00289.1  98 GLSSGASAGAVL-VITRFGDRLS-ALTLPVAAFaggLFSAAAVMLLFHFKKQRSAEHLILCGLAVSFLFGAVTSYLIFSGdqrA---Assvmfwslg 189
                   567899999999.7777776444.5555555556779******999*************************9999999445440...1444444444 PP

  Peptidase_U4 116 ...........llvlllgalv 125
                              ++++ l++l+
    EHU00289.1 190 glglaswhnlpYALVSLALLT 210
                   555555445443333333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.25
  Peptidase_U4  45 y 45 
                    
    EHU00289.1 263 G 263
                   2 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.31   1.4e+03      22      50 ..      60      88 ..      46     107 .. 0.71
   2 ?   -2.3   0.0      0.99   4.4e+03      33      48 ..      98     113 ..      90     132 .. 0.63
   3 ?    8.3   1.0   0.00052       2.3      29      53 ..     155     181 ..     125     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
      DUF543 22 DaclsnllvkvglgllvGvvasvllfrrR 50
                D  l ++l+ v  g++ ++v ++l + +R
  EHU00289.1 60 DLRLPRTLLAVMTGAGLAIVGALLQTTTR 88
                66667777777788888888777766555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.99
      DUF543  33 glgllvGvvasvllfr 48 
                 gl++++++ a ++++r
  EHU00289.1  98 GLSSGASAGAVLVITR 113
                 4455555545555555 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00052
      DUF543  29 lvkvglgllvGvvasvllfr..rRaap 53 
                 l   ++++l+G+v+s l+f   +Raa+
  EHU00289.1 155 LCGLAVSFLFGAVTSYLIFSgdQRAAS 181
                 556799*************99966665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2562.88
//
Query:       EHU00290.1  [L=323]
Description: putative periplasmic substrate-binding component of an ABC superfamily iron(III) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-23   83.3   0.0    2.4e-23   82.9   0.0    1.1  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.3e-27   2.4e-23      10     231 ..      56     292 ..      48     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.3e-27
                   HHHHHTT-GGGEEEB-GGG--GGGGGGT.....TS-BSBESSSB-HHHHHHH--SEEEE-GGG.......GGGHHHHHHHS-EEE----TTS..... CS
  Peripla_BP_2  10 eillalGatdkvvgvdtttsdpldadklee...aivevgadgeidvEklaalkPDlvilskgl....gltdedeellksgiptvivessntg..... 94 
                   e+ +al + +++vg  + + +    ++ ++   +i+e  a++ +++E+l+a+ PD  ++  ++    g       l++ gi+t++  +s+++     
    EHU00290.1  56 EMAFALHLQNRIVGLTGISGWYKMTPAFKQamgSIPE-LAPKYPSLETLLAASPDFFFAGWNYgmkvGGDVTPASLRQYGIKTLVLSESCVFtqkdk 151
                   6666666666666666666666666655555534444.478899*********************9955666677999******************* PP

                   .....HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-H CS
  Peripla_BP_2  95 .....eslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisa 186
                        + l++    lg+++g+ +eae+lv+++++ l+a+ ++ +  +p++v+v+ ++++  ++ +g + + +++++a+g++n+ ++  + ++++ s+
    EHU00290.1 152 qkatmDLLYNDEIKLGKIFGKRAEAEALVEDWKQQLQALPQRPADTQPRKVFVYDSGED-KPFTSGKYAMPTAIIEAAGGKNAMESL-EMSWGTTSW 246
                   *****************************************999998999999997777.88999**********************.********* PP

                   HHHHHH--SEEEEEEHHHHT-S--HHHHT-S.HHHHTSHHHHTT-E CS
  Peripla_BP_2 187 Eqilasdpdvifvsgraeadnktgleflken.pllaelpAvkngrV 231
                   E ++a +pd i+  + ++ +  + l +++en pl + +pAvk++r 
    EHU00290.1 247 ESVAATQPDFIILLDYQTGSGAEALRHFLENhPLMKLTPAVKHHRY 292
                   ****************8888887777777766***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2614.24
//
Query:       EHU00291.1  [L=245]
Description: ATP-binding component of an ABC superfamily iron transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-26   93.0   0.0    4.1e-26   92.1   0.0    1.4  1  ABC_tran      ABC transporter
    1.6e-09   38.1   0.5    5.6e-05   23.1   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    8.8e-09   35.1   0.0    1.3e-07   31.3   0.0    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
    1.1e-07   32.4   0.3    1.9e-07   31.6   0.3    1.4  1  AAA_16        AAA ATPase domain
      9e-05   23.1   0.0    0.00014   22.4   0.0    1.2  1  AAA_23        AAA domain
    0.00011   21.9   0.0    0.00018   21.2   0.0    1.3  1  AAA_29        P-loop containing region of AAA domain
    0.00025   21.5   0.0     0.0014   19.1   0.0    1.9  2  AAA           ATPase family associated with various cellular 
    0.00044   20.5   0.1     0.0024   18.1   0.1    2.0  1  AAA_22        AAA domain
    0.00051   20.4   0.0    0.00084   19.7   0.0    1.3  1  AAA_19        AAA domain
    0.00076   19.4   0.1     0.0016   18.4   0.1    1.8  1  NACHT         NACHT domain
     0.0012   18.8   0.1      0.012   15.6   0.0    2.4  3  AAA_5         AAA domain (dynein-related subfamily)
     0.0013   18.5   0.0       0.12   12.1   0.0    2.2  2  IstB_IS21     IstB-like ATP binding protein
     0.0061   16.3   0.0       0.01   15.6   0.0    1.3  1  AAA_15        AAA ATPase domain
      0.007   16.6   0.0      0.046   13.9   0.0    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0087   16.2   0.0      0.027   14.7   0.0    2.0  1  AAA_33        AAA domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.095   12.4   0.0    1.9  2  AAA_24        AAA domain
       0.02   15.1   0.0      0.033   14.4   0.0    1.4  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.024   14.2   0.0      0.038   13.6   0.0    1.4  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.025   13.6   0.0      0.048   12.7   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
       0.03   13.8   0.0      0.048   13.2   0.0    1.2  1  AAA_7         P-loop containing dynein motor region
      0.036   13.7   0.0      0.065   12.8   0.0    1.4  1  AAA_27        AAA domain
       0.04   13.9   0.0        0.2   11.7   0.0    1.9  2  AAA_14        AAA domain
      0.045   13.7   0.0      0.082   12.8   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea
      0.067   13.1   0.1       0.24   11.3   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
      0.074   13.1   0.0       0.21   11.7   0.0    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
      0.089   13.0   0.0       0.16   12.2   0.0    1.5  1  AAA_28        AAA domain
        0.1   13.0   0.0       0.16   12.4   0.0    1.4  1  RNA_helicase  RNA helicase
       0.12   12.2   0.0       0.18   11.6   0.0    1.3  1  AAA_11        AAA domain
       0.13   11.9   0.0       0.14   11.8   0.0    1.3  1  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.14   11.9   0.0       0.26   11.0   0.0    1.7  1  AAA_30        AAA domain
       0.17   11.9   0.0       0.31   11.1   0.0    1.3  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.18   11.2   0.0       0.26   10.7   0.0    1.3  1  SRPRB         Signal recognition particle receptor beta subun
       0.19   11.2   0.0       0.41   10.1   0.0    1.5  1  Pox_A32       Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   7.5e-29   4.1e-26       1     137 []       8     155 ..       8     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 7.5e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdee 84 
                 l++++++++ege+++i+G+nG+GK++Ll++++++l+     i+l+g+ l + ++++l   i+v+ q++  + +l+v+e                  ++ 
  EHU00291.1   8 LHHIHFSVREGERLVIIGPNGSGKTSLLRAMCRELSSPPQAIQLNGACLATFSRQQLATCIAVMAQNDMPDLRLSVEEYvalgriphlgacpagVNQRI 106
                 6899***************************************************************99999**99999************99777777 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 i++ +++ gl+ lk++++    + LSgG++qr alar+l++kp l+llDE t+
  EHU00291.1 107 IHESIDETGLSALKTRPL----AALSGGERQRAALARVLAQKPLLILLDESTN 155
                 ******************....****************************997 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     1e-07   5.6e-05       3      19 ..      22      38 ..      21      53 .. 0.93
   2 !   13.4   0.2   9.3e-05     0.051     230     301 ..     120     185 ..      98     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1e-07
      AAA_21  3 vliGpNgsGKSnLLdal 19
                v+iGpNgsGK++LL+a+
  EHU00291.1 22 VIIGPNGSGKTSLLRAM 38
                9**************97 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.3e-05
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 + +p++ lS G ++  a l+ +l++ +   l+l+DE  n+L+P +   ll l+k++   g+  i++ H+ +l
  EHU00291.1 120 KTRPLAALSGGERQR-AALARVLAQKP--LLILLDESTNHLDPLARQQLLALIKNK---GITAIAVLHDLSL 185
                 56799999*******.66666665554..89*******************999887...4555555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.3e-10   1.3e-07      28     187 ..      22     173 ..      11     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.3e-10
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                 +i+GpNGSGK++ll A++  L+   +    + +l+    ++ +++++  + ++++ +n+  +l+ + ee++   r+ + g     +n++ ++++  +  
  EHU00291.1  22 VIIGPNGSGKTSLLRAMCRELSSPPQ----AIQLNGACLATFSRQQLATC-IAVMAQNDMPDLRLSVEEYVALGRIPHLGACPAGVNQRIIHESIDETG 115
                 8****************999995444....44555544442334444444.5666677778899999999999999999**999999999999777777 PP

                 HHCTT-ST.TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagisk.elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 l+  +  +  +LSgGe++ +ala ++A +      l llDe   +LD   ++++  l+k+k 
  EHU00291.1 116 LSALKTRPlAALSGGERQRAALARVLAQK----PLLILLDESTNHLDPLARQQLLALIKNKG 173
                 77766654379**************9843....347899********************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.3   3.6e-10   1.9e-07      12     160 ..       7     170 ..       1     180 [. 0.61

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.6e-10
      AAA_16  12 Llsale.rvrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde.................aes 91 
                 Ll+ ++ +vr+g  e ++++G+ G+GK+sl+r+  r+l+    +i l+g c       ++++la+++    +++q + +                 + +
  EHU00291.1   7 LLHHIHfSVREG--ERLVIIGPNGSGKTSLLRAMCRELSSPpQAIQLNGACLAT---FSRQQLATCI---AVMAQNDMPdlrlsveeyvalgriphLGA 97 
                 444445566666..6788******************999994355566666666...3334455555...23333332233333544555555555444 PP

      AAA_16  92 aeleawrekleeala..........avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlr 160
                 + ++  ++ ++e++           + ++l+g   +r +++l+r l      ++pl+++lD+    +d+  +q l aL +
  EHU00291.1  98 CPAGVNQRIIHESIDetglsalktrPLAALSGG--ERQRAALARVL-----AQKPLLILLDESTnHLDPLARQQLLALIK 170
                 444444444444444777776654444444443..88888999999.....3789******7554777777777666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.7e-07   0.00014      23      40 ..      22      39 ..       8      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.7e-07
      AAA_23 23 lItGpNGaGKTTildAik 40
                +I+GpNG+GKT++l+A++
  EHU00291.1 22 VIIGPNGSGKTSLLRAMC 39
                8***************99 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.3e-07   0.00018      17      57 ..      11      54 ..       7      58 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.3e-07
      AAA_29 17 ieidlkg..atlltGpsGsGKSTllDAiqalLv.pakkvrfNka 57
                i++++++    +++Gp+GsGK++ll A+   L  p++ ++ N a
  EHU00291.1 11 IHFSVREgeRLVIIGPNGSGKTSLLRAMCRELSsPPQAIQLNGA 54
                455544446999***************98766515568899987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.6e-06    0.0014       2      33 ..      22      55 ..      21      91 .. 0.77
   2 ?    0.4   0.0       1.5   8.3e+02      45      66 ..     132     152 ..     102     215 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.6e-06
                EEESSTTSSHHHHHHHHHHHHTHE..EEEEETTT CS
         AAA  2 llyGppGtGKTllakavakelgve..fleisgse 33
                +++Gp G GKT+l +a+++el+++   ++++g+ 
  EHU00291.1 22 VIIGPNGSGKTSLLRAMCRELSSPpqAIQLNGAC 55
                689******************9662245555544 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHTSTSEEEEEET CS
         AAA  45 kirelfkeakekakpsilfiDE 66 
                 + r+ ++++ ++ kp  +++DE
  EHU00291.1 132 RQRAALARVLAQ-KPLLILLDE 152
                 444444444333.478888888 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   4.4e-06    0.0024       8     104 ..      21     158 ..      15     186 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.4e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsstsskdllrellralglelka........................ 70 
                 lv++G+ G+GKT llr + ++l   ++a +            + ++   + + ++++  dl+  + + + l++                          
  EHU00291.1  21 LVIIGPNGSGKTSLLRAMCRELSSPPQAIQlngaclatfsrqQLAT--CIAVMAQNDMPDLRLSVEEYVALGRIPhlgacpagvnqriihesidetgls 117
                 89********************887777778777777765442222..333333333333333333333333322444566666666666666555555 PP

      AAA_22  71 ........erlsseellealeqalraravielliiDEaqh.lr 104
                         +    e+ ++al++ l ++    l+++DE  + l+
  EHU00291.1 118 alktrplaALSGGERQRAALARVLAQKPL--LILLDESTNhLD 158
                 65455554333334444444444444444..777777766665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-06   0.00084      10     132 ..      18     174 ..      10     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.5e-06
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggv.kpeeillvaftgrAakelrerlaalgae.............................atTiHrl.al 77 
                  + l+++++ G+GKT +l++++++l +  +  +++   l++f ++   +l++ +a++ ++                              + iH+   +
  EHU00291.1  18 GERLVIIGPNGSGKTSLLRAMCRELSSPPQAiQLNGACLATFSRQ---QLATCIAVMAQNdmpdlrlsveeyvalgriphlgacpagvnQRIIHESiDE 113
                 567899*******************98765415556666666655...555555444554455788777788888888888888877776677744033 PP

      AAA_19  78 ldfddlltealelle.....eaeeekklqeee.llivDEfq.dvdelq.yrLlkallgekkkl 132
                  ++  l+t +l++l      +a+  + l ++  l++ DE+   +d+l+ ++Ll  +++++  +
  EHU00291.1 114 TGLSALKTRPLAALSggerqRAALARVLAQKPlLILLDESTnHLDPLArQQLLALIKNKG--I 174
                 5555556666666668887533334444444468999**862578665155555554333..3 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.9e-06    0.0016       2      66 ..      20      80 ..      19     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.9e-06
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS-- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepa 66
                 +++ G++GsGKT Ll+ +++++ ++ +  +    +   +l+++sr++ a+++a +   ++p++ 
  EHU00291.1 20 RLVIIGPNGSGKTSLLRAMCRELSSPPQAIQ----LNGACLATFSRQQLATCIAVMAQNDMPDLR 80
                5799*******************98875543....345677777777766666655555555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       5.1   2.8e+03      84     102 ..       3      21 ..       2      22 .. 0.86
   2 !   15.6   0.0   2.2e-05     0.012       2      33 ..      21      52 ..      20      75 .. 0.92
   3 ?    0.4   0.0       1.1     6e+02      86     113 ..     116     144 ..     105     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5.1
                 HHHHHHHSSEEE..-SSSE CS
       AAA_5  84 sLlslleerrllleeggel 102
                 +L++ll++ ++++ eg +l
  EHU00291.1   3 RLQPLLHHIHFSVREGERL 21 
                 6999********9999876 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.2e-05
                EEEE--SSSSHHHHHHHGGGGBS--EEEEE-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnreveyvqlt 33
                ++++Gp G+gK++l + +++ l ++ + +ql+
  EHU00291.1 21 LVIIGPNGSGKTSLLRAMCRELSSPPQAIQLN 52
                789************************99997 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.1
                 HHHHHSSEEE..-SSSEEE---....... CS
       AAA_5  86 lslleerrllleeggelvkakndd.ller 113
                 ls l +r l   +gge+++a+    l+++
  EHU00291.1 116 LSALKTRPLAALSGGERQRAALARvLAQK 144
                 67777788888888888877776665555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00022      0.12      44      70 ..      15      41 ..       2      51 .. 0.83
   2 ?    4.1   0.0     0.062        34     100     137 ..     135     172 ..     121     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgve 70
                +++ e +v++Gp G GK+ l  a+ +e
  EHU00291.1 15 VREGERLVIIGPNGSGKTSLLRAMCRE 41
                788999**************9999876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.062
   IstB_IS21 100 aralkrllkvdllilDdlgllpldqaeaellfeviekr 137
                 a  ++ l++  llil d ++++ld  ++++l+ +i+++
  EHU00291.1 135 AALARVLAQKPLLILLDESTNHLDPLARQQLLALIKNK 172
                 34455666778999999999**************9875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05      0.01      26      43 ..      21      38 ..       9      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-05
      AAA_15 26 tvliGkNnsGKSsileal 43
                 v+iG+N+sGK+s+l+a+
  EHU00291.1 21 LVIIGPNGSGKTSLLRAM 38
                69*************997 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.5e-05     0.046      19      89 ..     113     170 ..     104     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.5e-05
     SbcCD_C  19 edgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 e+g +    r  ++lSGGe+         aala ++ +      ++ l++LDE  + lD+  +++ll+l++
  EHU00291.1 113 ETGLSALKTRPLAALSGGER-------QRAALARVLAQ------KPLLILLDESTNHLDPLARQQLLALIK 170
                 555555567889999****9.......56899999999......589********************9987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.9e-05     0.027       3      24 ..      22      43 ..      21     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.9e-05
      AAA_33  3 llvGlpGsGKstlaerllkklg 24
                +++G++GsGK+ l++ ++++l 
  EHU00291.1 22 VIIGPNGSGKTSLLRAMCRELS 43
                789***************9987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018     0.095       3      22 ..      19      38 ..      17      54 .. 0.80
   2 ?   -0.1   0.0       1.2   6.4e+02      22      42 ..     141     161 ..     135     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 +++i+Gp+g+GKT+l++ +
  EHU00291.1 19 ERLVIIGPNGSGKTSLLRAM 38
                589*************9988 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
      AAA_24  22 lgpkplfidtekGlksldadk 42 
                 l +kpl+i +++++++ld+  
  EHU00291.1 141 LAQKPLLILLDESTNHLDPLA 161
                 4699***********999765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     6e-05     0.033       1      28 [.      20      47 ..      20      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-05
                EEEEESSTTSSHHHHHHCHCT-CCC-EE CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfseke 28
                ++v++G +g+GKtsll+ ++++  s+ +
  EHU00291.1 20 RLVIIGPNGSGKTSLLRAMCRELSSPPQ 47
                589***************9988766544 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.1e-05     0.038       3      25 ..      21      43 ..      19      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-05
                EEEEESTTCCHHHHHHHHHCT-- CS
        cobW  3 tvltGflGsGKTtLlnhllenra 25
                +v+ G+ GsGKT+Ll++++++ +
  EHU00291.1 21 LVIIGPNGSGKTSLLRAMCRELS 43
                6899**************97655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.9e-05     0.048     120     156 ..       9      45 ..       3      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.9e-05
       T2SSE 120 evlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 + ++ +vre   +++ G+ gsGKt ll a+  e+ + 
  EHU00291.1   9 HHIHFSVREGERLVIIGPNGSGKTSLLRAMCRELSSP 45 
                 567889999999******************9999876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.9e-05     0.048      27      66 ..      12      52 ..       6      72 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-05
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkld.kekylslt 66
                +  ++++  ++++Gp G+GKt++++ ++++l+ + + + l+
  EHU00291.1 12 HFSVREGERLVIIGPNGSGKTSLLRAMCRELSsPPQAIQLN 52
                566889999******************99998344444444 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012     0.065      18      47 ..      10      39 ..       8      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAis 47
                +++fs  e +  +i+GpN +GK+++lrA+ 
  EHU00291.1 10 HIHFSVREGERLVIIGPNGSGKTSLLRAMC 39
                677887777777999*************96 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00037       0.2       5      38 ..      21      53 ..      17      87 .. 0.79
   2 ?   -0.1   0.0       1.6   8.8e+02      61      76 ..     141     156 ..     105     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesilyinl 38
                lvi G+  +GKT ll+ + +el  ++ + + +n 
  EHU00291.1 21 LVIIGPNGSGKTSLLRAMCRELS-SPPQAIQLNG 53
                89*****************9998.6666666664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.6
      AAA_14  61 keekktylflDEiqev 76 
                  ++k  +++lDE  + 
  EHU00291.1 141 LAQKPLLILLDESTNH 156
                 2347788999998765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00015     0.082      23      44 ..      21      42 ..       7      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
    ATPase_2 23 yfiYGpegsGKtaLlkeiienl 44
                ++i Gp gsGKt+Ll+ +  +l
  EHU00291.1 21 LVIIGPNGSGKTSLLRAMCREL 42
                799*************998776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00045      0.24      93     124 ..      11      43 ..       4      66 .. 0.82
   2 ?   -1.1   0.1       2.8   1.5e+03      29      61 ..     156     188 ..     140     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00045
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpele 124
                  ++  +++ +  v++G+ G GK++L+ a+  el+
   EHU00291.1  11 IHFSVREgERLVIIGPNGSGKTSLLRAMCRELS 43 
                  55566665899***************9988765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.8
                  T--HHHHHHHHHHHHHTT-EEEEEEE-GGG--H CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivlnKiDllee 61 
                  +l++   +++L+l+++kgi+ + vl  + l+++
   EHU00291.1 156 HLDPLARQQLLALIKNKGITAIAVLHDLSLIDT 188
                  455555567788888888888888877776654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00039      0.21       2      23 ..      21      42 ..      20      74 .. 0.88
   2 ?   -1.5   0.0       4.6   2.5e+03      70     100 ..     137     168 ..     101     182 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00039
                EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgek 23
                 +i+G   +GK++L++a+++e 
  EHU00291.1 21 LVIIGPNGSGKTSLLRAMCREL 42
                68*****************973 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.6
                 HHHHHCTSEEEEEEETTTTCSHHHH.HHHHHH CS
    MMR_HSR1  70 flaleeadlillvvdaseeklkpld.eeleel 100
                 ++++   + +l+++d s+++l+pl  ++l +l
  EHU00291.1 137 LARVLAQKPLLILLDESTNHLDPLArQQLLAL 168
                 33333345677777755455555431344444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0003      0.16       1      20 [.      20      39 ..      20      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0003
      AAA_28  1 kivitGgestGKTtlleaLa 20
                + vi+G+ ++GKT+ll+a+ 
  EHU00291.1 20 RLVIIGPNGSGKTSLLRAMC 39
                579*************9975 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0003      0.16       2      24 ..      22      44 ..      21      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0003
  RNA_helicase  2 wlyGpsgeGKStlakeLakallk 24
                  ++ Gp+g GK++l + ++++l++
    EHU00291.1 22 VIIGPNGSGKTSLLRAMCRELSS 44
                  799*****************985 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00033      0.18       8      42 ..       9      43 ..       5      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00033
      AAA_11  8 eaiksalseseitliqGPPGtgKTktivellsqll 42
                + i++ ++e e  +i GP G+gKT+ + +++++l 
  EHU00291.1  9 HHIHFSVREGERLVIIGPNGSGKTSLLRAMCRELS 43
                5678889999999********************94 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.14       9      40 ..      13      44 ..      10     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                 S-EBTT-EEEEEESTTSSHHHHHHHHHHHSST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqslskqsns 40
                 f++ +G+r++i+g +g Gkt ++++++++ +s
   EHU00291.1 13 FSVREGERLVIIGPNGSGKTSLLRAMCRELSS 44
                 78899******************999998655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00049      0.26      20      41 ..      20      42 ..      11     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00049
      AAA_30 20 vavltGpAGtGKttalkal.rea 41
                  v+ Gp G+GKt +l+a+ re+
  EHU00291.1 20 RLVIIGPNGSGKTSLLRAMcREL 42
                46899************995554 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00057      0.31      19      44 ..      18      43 ..       2      50 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00057
                TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalg 44
                g+ +++ G+ G+GKT l r+++++l 
  EHU00291.1 18 GERLVIIGPNGSGKTSLLRAMCRELS 43
                5568999****************996 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00049      0.26       4      35 ..      19      50 ..      16      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
                -EEEEE-STTSSHHHHHHHHHHSS---B---S CS
       SRPRB  4 pavllvGlsdsGKTslftrLttdsvkktvtSq 35
                ++++++G+  sGKTsl+  +  +   + ++ q
  EHU00291.1 19 ERLVIIGPNGSGKTSLLRAMCRELSSPPQAIQ 50
                5789*************999888766666555 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00076      0.41      15      38 ..      20      43 ..      13      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00076
     Pox_A32 15 rlalvGgsGsGktvyLlsLlrtlv 38
                rl+++G  GsGkt  L+++ r+l 
  EHU00291.1 20 RLVIIGPNGSGKTSLLRAMCRELS 43
                9***************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2053.73
//
Query:       EHU00292.1  [L=145]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-09   35.5   0.0    7.8e-08   32.5   0.0    2.1  2  HTH_Tnp_1  Transposase
     0.0006   19.5   0.0     0.0079   16.0   0.0    2.1  2  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.017   15.0   0.1       0.31   11.0   0.0    2.2  2  MarR_2     MarR family
      0.063   13.4   0.0         13    6.1   0.0    2.3  2  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18   7.9e+02      14      38 ..       9      33 ..       7      48 .. 0.86
   2 !   32.5   0.0   1.7e-11   7.8e-08       3      40 ..      91     128 ..      89     130 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.18
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspn 38
                +++++ +++    +e  rr+g+ + 
  EHU00292.1  9 EALHLHFDENLARVEAGRRLGIPKT 33
                67888889999999999****9875 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.7e-11
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqL 40 
                 rr  ++++fK+++V+ sl+pg++v+++Ar+ g+++n L
  EHU00292.1  91 RRPNFPRAFKIALVEKSLQPGTNVAQLARENGINDNLL 128
                 6789********************************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06    0.0079       9      46 ..       9      47 ..       7      48 .. 0.88
   2 ?    1.1   0.0      0.08   3.6e+02      11      30 ..     104     124 ..      98     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ +  l + e+ r+Lg+++ Tv+    r+r+ Gl
  EHU00292.1  9 EALHLHFDeNLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                67777776699999*********************9998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.08
      HTH_23  11 llllae.GlsvreIAreLgvs 30 
                 +   ++ G +v++ Are g++
  EHU00292.1 104 VEKSLQpGTNVAQLARENGIN 124
                 444556889999******997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-05      0.31      10      50 ..       7      47 ..       4      47 .. 0.91
   2 ?    1.5   0.0      0.06   2.7e+02      18      33 ..     110     123 ..     102     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.9e-05
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l+  e  rrlg++k +v  +  r+ +aGL
  EHU00292.1  7 LLEALHLHFDENLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                6888888888889999************************8 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.06
                 TTSEEEHHHHHHHHTS CS
      MarR_2  18 pgrdltvgelarrlgl 33 
                 pg   +v++lar+ g+
  EHU00292.1 110 PG--TNVAQLARENGI 123
                 66..799******998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0028        13      11      41 ..      16      47 ..       5      53 .. 0.81
   2 ?    5.2   0.0     0.005        23       2      25 ..     100     124 ..      99     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0028
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGi 41
                + + ++ ea r+lgi  +tv ++  r+++ G+
  EHU00292.1 16 DENlARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                45567889************999999999886 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.005
      HTH_28   2 Rleiikllaa.GhsvreaArelgis 25 
                 ++  ++  ++ G +v+++Are gi+
  EHU00292.1 100 KIALVEKSLQpGTNVAQLARENGIN 124
                 5556666566588***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1116.50
//
Query:       EHU00293.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00293.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00293.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00293.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00293.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 771.14
//
Query:       EHU00294.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00294.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1043.35
//
Query:       EHU00295.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-98  328.8   3.4    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.038   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.041   13.4   2.5      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.28   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.77    8.9   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.5    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.1    7.2   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  326.1   0.0  2.2e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00295.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.2e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00295.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00295.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00295.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00295.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00295.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00295.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00295.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU00295.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00295.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00295.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00295.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00295.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00295.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU00295.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00295.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00295.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00295.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00295.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU00295.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00295.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU00295.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU00295.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00295.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00295.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU00295.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00295.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00295.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU00295.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU00295.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00295.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00295.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00295.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00295.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1052  (0.0586759); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.37
# Mc/sec: 4242.96
//
Query:       EHU00296.1  [L=484]
Description: AMP nucleosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-52  176.9   0.0    3.4e-52  176.2   0.0    1.3  1  AMNp_N     Bacterial AMP nucleoside phosphorylase N-terminus
    2.4e-17   63.0   0.0    4.2e-17   62.2   0.0    1.4  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> AMNp_N  Bacterial AMP nucleoside phosphorylase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.0   3.7e-56   3.4e-52       1     153 [.      12     167 ..      12     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.2 bits;  conditional E-value: 3.7e-56
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHC..TTEEEEEEEEE-S--SS.-SS-SSS--SSSEEEEEE---TTTTHHHHHHHHHHHHHCC-- CS
      AMNp_N   1 aavarleelYeeavaalrealeaflaggelpderara..afvYPelrvtteseaev.dsrrsfgrvsepGtYsttvtrPdlfreYlleqlelLlrnygv 96 
                 +a+++le+lY++av+alr++++a++++g lpd +ar+   fvYPelr+t++++ ++ +++r++gr++++G+YsttvtrP+l+r+Y+ eql +L ++y+v
  EHU00296.1  12 QALNALEQLYNDAVDALRASIKAYTEEGVLPDPAAREqgLFVYPELRITWQGDGPQqNRTRAWGRFTHTGSYSTTVTRPALLRHYISEQLAMLEKEYDV 110
                 699*********************************9999**************99899**************************************** PP

                 EEEEEEEEEE--GGGCCTSST---SCCCHHHHHHCS--B-STXXXXXXXXXXXXXXX CS
      AMNp_N  97 evevgeSdqeiPlhyvldeselelegalsaeladvfdvpdLaaidDeiadGtleaae 153
                 ++evg+S+qeiP++yv+d+s+l+l+++++a +a++f++++L++i+De+adG+++a++
  EHU00296.1 111 DIEVGPSQQEIPYPYVIDGSDLSLDRTMNAGIARHFPTTELSQIGDETADGLFHADA 167
                 ****************************************************99876 PP

>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   4.7e-21   4.2e-17      40     202 ..     269     431 ..     237     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.7e-21
                 TTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEESSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHT CS
   PNP_UDP_1  40 kgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainfdgrsplygpkeegqyfpdsydapadpelrallkeaaea 138
                 +++ ++++  G+G++na +++ + ++   ++ a ++iG +Ggl ++ ++GD v++ +++++d   ++  p    +  p ++ a + ++l++++k  ++ 
  EHU00296.1 269 HRRGITLINIGVGPSNAKTICDHLAVI--RPHAWLMIGHCGGLCESQRIGDYVLAHAYLRDDHVLDSVLP----PDIPIPSIAEVQRALYEATKS-VSG 360
                 778899************777777777..7******************************9999999998....667888888889******999.444 PP

                 TT.....TTEEEEEEEEESESS-CHHHHHH..HHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEEEETTT CS
   PNP_UDP_1 139 lg.....ikvhrGvvatadgfyaeteaelr..llrrlgadaveMEtaavaqlArelgipfaairvvsdlaa 202
                 ++      ++++G+v+t+d    e +  ++  +++   a av+ME+a +a+  +++ +p++++ +vsd+  
  EHU00296.1 361 MPgeevkERLRTGTVVTTDDRNWELRYSASalRFNLSRAVAVDMESATIAAQGYRFRVPYGTLLCVSDKPL 431
                 4445555******************6655577888888******************************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3532.85
//
Query:       EHU00297.1  [L=177]
Description: hypothetical protein CKS_2534 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-10   41.4   2.1     0.0026   17.9   0.8    4.3  5  XhlA             Haemolysin XhlA
    4.7e-09   36.5  14.0        0.5   10.8   0.2    5.1  6  UPF0184          Uncharacterised protein family (UPF0184)
    1.2e-07   32.1   0.0      0.062   13.8   0.0    3.5  2  NPV_P10          Nucleopolyhedrovirus P10 protein
    3.3e-07   30.5   0.0    2.1e-05   24.7   0.0    2.1  2  Tropomyosin_1    Tropomyosin like
    4.5e-07   29.9   0.0      0.002   18.2   0.0    2.4  2  DUF1664          Protein of unknown function (DUF1664)
    1.2e-06   28.6   0.4        3.1    8.1   0.0    4.9  7  V-SNARE_C        Snare region anchored in the vesicle membran
    1.4e-06   28.0   0.0        3.1    7.7   0.0    5.2  5  Matrilin_ccoil   Trimeric coiled-coil oligomerisation domain 
    3.1e-06   26.7   0.0    3.9e-06   26.4   0.0    1.0  1  Tropomyosin      Tropomyosin
    4.8e-06   27.0   1.4      0.062   13.8   0.1    4.0  3  DUF16            Protein of unknown function DUF16
      4e-05   23.9   0.0        4.5    7.8   0.0    3.6  4  FlaC_arch        Flagella accessory protein C (FlaC)
    5.3e-05   23.3   0.0        9.7    6.4   0.0    4.9  3  DUF2802          Protein of unknown function (DUF2802)
    6.5e-05   23.2   0.0        1.1    9.6   0.0    3.3  4  E2R135           Coiled-coil receptor-binding R-domain of col
    8.5e-05   22.3   7.5          9    6.2   0.5    6.5  7  MtrG             Tetrahydromethanopterin S-methyltransferase,
    0.00018   21.8   0.1        3.2    8.2   0.0    4.1  2  CLZ              C-terminal leucine zipper domain of cyclic n
    0.00025   21.4   0.0       0.53   10.7   0.0    3.7  3  Snapin_Pallidin  Snapin/Pallidin
    0.00041   20.4   0.0      0.042   13.9   0.0    2.3  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
    0.00073   19.8   0.3         31    5.0   0.0    4.5  5  CCDC-167         Coiled-coil domain-containing protein 167
    0.00081   19.3  11.7         10    5.9   0.2    5.5  5  Glyco_H_20C_C    Glycoside Hydrolase 20C C-terminal domain
    0.00089   18.7   0.1       0.47    9.8   0.1    2.7  1  DUF3552          Domain of unknown function (DUF3552)
     0.0012   18.8   0.0      0.063   13.3   0.0    2.1  2  Laminin_II       Laminin Domain II
     0.0013   17.0   0.0        0.4    8.8   0.0    2.0  2  EzrA             Septation ring formation regulator, EzrA
     0.0025   18.0   5.6        0.5   10.7   0.7    2.8  2  DUF4164          Domain of unknown function (DUF4164)
     0.0042   15.0   0.0      0.005   14.7   0.0    1.0  1  Myosin_tail_1    Myosin tail
     0.0075   17.0   0.0        1.1   10.1   0.0    2.9  1  Occludin_ELL     Occludin homology domain
     0.0093   15.6   0.0      0.018   14.6   0.0    1.5  1  Exonuc_VII_L     Exonuclease VII, large subunit
     0.0096   16.0   0.0        9.4    6.3   0.0    3.2  2  COG2             COG (conserved oligomeric Golgi) complex com
  ------ inclusion threshold ------
      0.011   15.5   0.0        8.6    6.1   0.0    3.0  2  DUF241           Arabidopsis protein of unknown function
      0.026   14.4   0.0         18    5.2   0.0    3.0  4  DASH_Spc19       Spc19
      0.029   14.8   0.0        6.7    7.2   0.0    3.3  1  DUF4140          N-terminal domain of unknown function (DUF41
      0.031   14.7   0.0        2.1    8.8   0.0    3.2  2  ACP_PD           Acyl carrier protein phosphodiesterase
       0.04   14.0   0.0       0.14   12.2   0.0    1.9  1  Nup54            Nucleoporin complex subunit 54
      0.044   13.7   0.0      0.088   12.7   0.0    1.7  1  EMP24_GP25L      emp24/gp25L/p24 family/GOLD
      0.048   13.9   0.4       0.63   10.3   0.4    2.4  1  Cortex-I_coil    Cortexillin I, coiled coil
      0.048   12.8   0.0        3.1    6.8   0.0    2.5  2  RmuC             RmuC family
      0.059   13.7   0.0         26    5.2   0.0    2.9  3  HrpB7            Bacterial type III secretion protein (HrpB7)
      0.079   12.5   0.0       0.83    9.2   0.0    2.1  1  MscS_porin       Mechanosensitive ion channel porin domain
       0.08   12.0   0.0        9.1    5.3   0.0    2.5  2  APG17            Autophagy protein Apg17
        0.1   11.5   0.0       0.91    8.3   0.0    1.9  1  Spc7             Spc7 kinetochore protein
        0.1   11.0   0.0        9.7    4.4   0.0    2.1  2  Sec3_C           Exocyst complex component Sec3
       0.13   12.5   0.3        6.9    7.0   0.1    3.5  4  Osmo_CC          Osmosensory transporter coiled coil
       0.15   12.3   0.1         53    4.2   0.1    3.2  4  KxDL             Uncharacterized conserved protein
       0.21   10.9   0.0       0.74    9.1   0.0    1.8  1  GAS              Growth-arrest specific micro-tubule binding
       0.51    8.7   0.7        6.9    5.0   0.1    2.3  2  Hemagglutinin    Haemagglutinin
        5.5    7.3   6.9         41    4.5   5.5    3.3  2  DUF1283          Protein of unknown function (DUF1283)
        8.4    5.7  15.2        1.4    8.2   1.7    2.7  2  TraF_2           F plasmid transfer operon, TraF, protein


Domain annotation for each model (and alignments):
>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0023      0.92       4      46 ..      10      52 ..       7      55 .. 0.87
   2 !   12.0   0.0   0.00047      0.19       4      46 ..      38      80 ..      35      82 .. 0.91
   3 !   10.1   0.0    0.0019      0.74       5      44 ..      53      92 ..      50     107 .. 0.74
   4 ?    7.3   0.0     0.013       5.4       3      42 ..      72     111 ..      70     117 .. 0.67
   5 !   17.9   0.8   6.4e-06    0.0026       4      64 ..     108     166 ..      99     169 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0023
        XhlA  4 erlerietkldnleervdkleekaaeaeekiknleedlkkles 46
                 rl  ++++ld l++r+d ++++ +  +++++ + ++l+ l s
  EHU00297.1 10 SRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDS 52
                5788899999999999999999999999999999999998876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00047
        XhlA  4 erlerietkldnleervdkleekaaeaeekiknleedlkkles 46
                 rl  ++++ld l++r+d ++++ +  +++++ + ++l+ + s
  EHU00297.1 38 SRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDS 80
                5888999******************************999876 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0019
        XhlA  5 rlerietkldnleervdkleekaaeaeekiknleedlkkl 44
                rl  ++++ld l++r+d ++++ +  +++++ + ++l+ l
  EHU00297.1 53 RLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLDGL 92
                6666777777777777777777777777777777777654 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.013
        XhlA   3 kerlerietkldnleervdkleekaaeaeekiknleedlk 42 
                 ++rl  i+++ld  ++r+d l+ + + ++++++ +  +l+
  EHU00297.1  72 DKRLDGIDSRLDGVDKRLDGLDCRLDGVDKRLDGIDYRLD 111
                 5677777777777777777777777777776666666665 PP

  == domain 5  score: 17.9 bits;  conditional E-value: 6.4e-06
        XhlA   4 erlerietkldnleervdkleekaaeaeekiknleedlkklesnqkWlirtiiGalisavi 64 
                  rl  i+++ld ++ r dk++++ ++++e+ + l  + ++l + +  ++++++ a+++++ 
  EHU00297.1 108 YRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNNRL--IWTFMVPAILAVFA 166
                 566667777777777777777777777777777777777775555..56777777777776 PP

>> UPF0184  Uncharacterised protein family (UPF0184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.014       5.6      35      57 ..       5      27 ..       1      29 [. 0.88
   2 !    8.4   0.1    0.0069       2.7      31      57 ..      29      55 ..      27      57 .. 0.88
   3 !   10.8   0.2    0.0013       0.5      31      57 ..      57      83 ..      55      85 .. 0.91
   4 !   10.5   0.2    0.0016      0.62      30      56 ..      70      96 ..      66      99 .. 0.89
   5 !    9.5   0.2    0.0032       1.3      31      56 ..      85     110 ..      82     117 .. 0.89
   6 ?    7.9   0.5      0.01         4      31      57 ..     120     146 ..      97     153 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.014
     UPF0184 35 LDqinsaLDalEernDdlnskLr 57
                 D ++s LD +++r D l s+L 
  EHU00297.1  5 FDGLDSRLDGVDKRLDGLDSRLD 27
                7999****************995 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0069
     UPF0184 31 insmLDqinsaLDalEernDdlnskLr 57
                ++   D ++s LD +++r D l s+L 
  EHU00297.1 29 VDKRFDGLDSRLDGVDKRLDGLDSRLD 55
                6677899*****************995 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0013
     UPF0184 31 insmLDqinsaLDalEernDdlnskLr 57
                ++  LD ++s LD +++r D + s+L 
  EHU00297.1 57 VDKRLDGLDSRLDGVDKRLDGIDSRLD 83
                7789*********************95 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.0016
     UPF0184 30 ainsmLDqinsaLDalEernDdlnskL 56
                 ++  LD i+s LD +++r D l  +L
  EHU00297.1 70 GVDKRLDGIDSRLDGVDKRLDGLDCRL 96
                68889******************9998 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.0032
     UPF0184  31 insmLDqinsaLDalEernDdlnskL 56 
                 ++  LD +++ LD +++r D +  +L
  EHU00297.1  85 VDKRLDGLDCRLDGVDKRLDGIDYRL 110
                 7889****************999888 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.01
     UPF0184  31 insmLDqinsaLDalEernDdlnskLr 57 
                 ++   D+++   D+++er D+l ++ +
  EHU00297.1 120 MDRRFDKVDQRFDKVDERFDKLDARFE 146
                 334456666666666666666666655 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00016     0.062      17      65 ..      37      82 ..       2     115 .. 0.69
   2 !    9.2   0.0    0.0042       1.7      16      52 ..     113     149 ..     106     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00016
     NPV_P10 17 ddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiL 65
                d+++d +++++d +++ l  v+   ++Ld++   L+ +++ ++ I++ L
  EHU00297.1 37 DSRLDGVDKRLDGLDSRLDGVD---KRLDGLDSRLDGVDKRLDGIDSRL 82
                4445555555555555544433...555555555555555555555544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0042
     NPV_P10  16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLa 52 
                 +d+++d ++ + d+v++ + +v+e  +kLda  ++L+
  EHU00297.1 113 IDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLN 149
                 789999999999*****99999988888888877776 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.003       1.2      85     138 ..       8      61 ..       1      78 [. 0.42
   2 !   24.7   0.0   5.2e-08   2.1e-05      34     140 ..      44     147 ..      37     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.003
  Tropomyosin_1  85 LEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewekkyeeleeky 138
                    L   l+  dk+L     +L  +d++ + l+ +   ++++ d  +++++ +++++
     EHU00297.1   8 LDSRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRL 61 
                    444444444444444444444444444444444444444444444444333332 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 5.2e-08
  Tropomyosin_1  34 eqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewek 129
                    ++ +  L  +++ +++ ++ l+++l  + + ++     ++  + + ++++ L   l+  dk+L     +L  +d++ + ++R+  +++q+ d+ ++
     EHU00297.1  44 DKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGI---DSRLDGVDKRLDGLDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDE 136
                    44555566666666666666666666666665543...4566799*************************************************** PP

  Tropomyosin_1 130 kyeeleekyke 140
                    ++++l++++++
     EHU00297.1 137 RFDKLDARFES 147
                    *****999876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00011     0.042      42     118 ..      11      90 ..       1      93 [. 0.66
   2 !   18.2   0.0     5e-06     0.002      39     122 ..      64     150 ..      62     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00011
     DUF1664  42 avesvskqleqvseslaatkrh...Lssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                  ++ v k+l+ + + l  + ++   L sr+d vdk+ld        +++ ++ + + l+ +++ ++ +++   g++++l+
  EHU00297.1  11 RLDGVDKRLDGLDSRLDGVDKRfdgLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLD 90 
                 45556666666665555443331226777777777777777777777777777777777777777777777777777776 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 5e-06
     DUF1664  39 lsdavesvskqleqvseslaatkrh...Lssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 l + ++ v k+l+ + + l  + ++   L  r+d vdk+ld        i++ ++ + +  +++++ +++v+e + +l+++ e++++
  EHU00297.1  64 LDSRLDGVDKRLDGIDSRLDGVDKRldgLDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNN 150
                 5566677888999988777766665111567*************************************************9999875 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.25        99      36      56 ..      10      30 ..       5      31 .. 0.85
   2 ?    3.8   0.0      0.17        69      36      57 ..      24      45 ..      19      53 .. 0.77
   3 ?    4.7   0.0     0.094        37      36      59 ..      38      61 ..      33      68 .. 0.78
   4 ?    6.7   0.0     0.022       8.9      36      65 ..      52      81 ..      51      82 .. 0.85
   5 ?    5.9   0.0     0.038        15      36      57 ..      66      87 ..      59      95 .. 0.63
   6 !    8.1   0.0    0.0079       3.1      38      65 ..      96     123 ..      89     124 .. 0.94
   7 ?    1.9   0.0      0.67   2.7e+02      39      56 ..     118     135 ..     116     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.25
   V-SNARE_C 36 etLkrarsklhnvanrlgksn 56
                ++L ++ ++l ++++rl+ ++
  EHU00297.1 10 SRLDGVDKRLDGLDSRLDGVD 30
                578999999999999999876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.17
   V-SNARE_C 36 etLkrarsklhnvanrlgksns 57
                ++L ++ +++ ++++rl+ +++
  EHU00297.1 24 SRLDGVDKRFDGLDSRLDGVDK 45
                5678888888888888888776 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.094
   V-SNARE_C 36 etLkrarsklhnvanrlgksnsiL 59
                ++L ++ ++l ++++rl+ +++ L
  EHU00297.1 38 SRLDGVDKRLDGLDSRLDGVDKRL 61
                568888899999999998887755 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.022
   V-SNARE_C 36 etLkrarsklhnvanrlgksnsiLrsikrR 65
                ++L ++ ++l ++++rl+ +++ L  i+ R
  EHU00297.1 52 SRLDGVDKRLDGLDSRLDGVDKRLDGIDSR 81
                578899999999999999999988888776 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.038
   V-SNARE_C 36 etLkrarsklhnvanrlgksns 57
                ++L ++ ++l ++++rl+ +++
  EHU00297.1 66 SRLDGVDKRLDGIDSRLDGVDK 87
                4566666666666666666554 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0079
   V-SNARE_C  38 LkrarsklhnvanrlgksnsiLrsikrR 65 
                 L ++ ++l +++ rl+ +++ L  ++rR
  EHU00297.1  96 LDGVDKRLDGIDYRLDGIDKRLDGMDRR 123
                 88999**********************9 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.67
   V-SNARE_C  39 krarsklhnvanrlgksn 56 
                  +  +++  v++r++k++
  EHU00297.1 118 DGMDRRFDKVDQRFDKVD 135
                 566677777777777764 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.094        38      27      45 .]       8      26 ..       2      26 .. 0.87
   2 ?    5.4   0.0     0.042        17      20      45 .]      29      54 ..      27      54 .. 0.85
   3 !    7.7   0.0    0.0077       3.1      20      45 .]      43      68 ..      41      68 .. 0.92
   4 ?    5.4   0.0     0.043        17      20      45 .]      57      82 ..      55      82 .. 0.88
   5 ?    5.3   0.0     0.046        18      20      43 ..      85     108 ..      69     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.094
                    HHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 27 LtqkLeavtkRlealEnkl 45
                    L ++L+ v kRl  l+++l
      EHU00297.1  8 LDSRLDGVDKRLDGLDSRL 26
                    7889***********9986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.042
                    HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 20 VeseiqaLtqkLeavtkRlealEnkl 45
                    V+++ + L ++L+ v kRl  l+++l
      EHU00297.1 29 VDKRFDGLDSRLDGVDKRLDGLDSRL 54
                    5666777999************9986 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0077
                    HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 20 VeseiqaLtqkLeavtkRlealEnkl 45
                    V+++++ L ++L+ v kRl  l+++l
      EHU00297.1 43 VDKRLDGLDSRLDGVDKRLDGLDSRL 68
                    8899999***************9986 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.043
                    HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 20 VeseiqaLtqkLeavtkRlealEnkl 45
                    V+++++ L ++L+ v kRl   +++l
      EHU00297.1 57 VDKRLDGLDSRLDGVDKRLDGIDSRL 82
                    7889999************9888775 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.046
                     HHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil  20 VeseiqaLtqkLeavtkRlealEn 43 
                     V+++++ L  +L+ v kRl   ++
      EHU00297.1  85 VDKRLDGLDCRLDGVDKRLDGIDY 108
                     445555555556666666555555 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   9.7e-09   3.9e-06       2     150 ..       4     152 ..       3     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 9.7e-09
  Tropomyosin   2 klkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleelea 99 
                  ++  ++  ld +  rl+ + ++l+  +k+++  ++    + +r+  l++ l+ +++rl+  +++L+ + k+ d  +  +  + +r    + +l+  ++
   EHU00297.1   4 RFDGLDSRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLDGLDCRLDGVDK 101
                  666778899999************************************************************************************** PP

  Tropomyosin 100 qlkeakeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeL 150
                  +l+   ++ +  d++++ + r+   v++ +++  er ++ +++ ++L ++L
   EHU00297.1 102 RLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNNRL 152
                  ***********************************************9998 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   0.00015     0.062      36     104 .]      12      80 ..       4      94 .. 0.52
   2 ?    6.0   0.1     0.041        16      78     103 ..      96     121 ..      79     128 .. 0.62
   3 ?    8.0   0.1      0.01         4      33      73 ..     107     147 ..      99     153 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00015
                 HHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHC- CS
       DUF16  36 LkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDsieg 104
                 L  +++++d l+ +++ + +  + ++ +++   ++ +  + +l+ vd+ l+ +   L+ ++kRlD i++
  EHU00297.1  12 LDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDS 80 
                 555555555555555555555555555555555555555555555555555555555555555554442 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.041
                 ......HHHHHHHHHHHHHHHHHHHC CS
       DUF16  78 lnkvdetleliletLqkinkRlDsie 103
                 l+ vd+ l+ i   L+ i+kRlD ++
  EHU00297.1  96 LDGVDKRLDGIDYRLDGIDKRLDGMD 121
                 44566666666666666666666654 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqka 73 
                 + rL  i++++d  + +++k+ q  +k +e+ ++l ++ + 
  EHU00297.1 107 DYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFES 147
                 55666777777777777777777777777777777665554 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.049        19       1      36 [.      11      46 ..       2      51 .. 0.82
   2 ?    7.8   0.0     0.011       4.5       1      33 [.      53      85 ..      39      93 .. 0.57
   3 ?    5.0   0.0     0.081        32       1      37 [.      81     117 ..      81     127 .. 0.72
   4 ?    7.0   0.0      0.02       7.8       2      35 ..     103     136 ..      95     152 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.049
   FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveelken 36
                r+d ++++l+ l+++l+ v k ++ l + ++ ++++
  EHU00297.1 11 RLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKR 46
                677788888888888888888888888888888876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.011
   FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveel 33
                r+d ++++l+ l+++l+ v k ++ + + ++ +
  EHU00297.1 53 RLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGV 85
                444555555555555555555555555555555 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.081
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenV 37 
                 r+d ++++l+ l+ +l+ v k ++ +   ++ ++++ 
  EHU00297.1  81 RLDGVDKRLDGLDCRLDGVDKRLDGIDYRLDGIDKRL 117
                 5677777888888888888888888887777777654 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.02
   FlaC_arch   2 idelEnklsklsteletvkkeneelsksveelke 35 
                 +d ++ +l+ ++ +l+ + + ++++ +  ++++e
  EHU00297.1 103 LDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDE 136
                 3334444444444444444444444444444444 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.033        13       5       5 ..      53      53 ..       1     111 [. 0.70
   2 ?    0.6   0.0       1.5   6.1e+02       1      22 [.      98     119 ..      98     124 .. 0.71
   3 ?    6.4   0.0     0.024       9.7       2      25 ..     120     143 ..     112     152 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.033
     DUF2802  5 r 5 
                r
  EHU00297.1 53 R 53
                1 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.5
     DUF2802   1 gmgqrlaelekrlkqleerlee 22 
                 g+++rl+ ++ rl+ +++rl+ 
  EHU00297.1  98 GVDKRLDGIDYRLDGIDKRLDG 119
                 5778888888888887777764 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.024
     DUF2802   2 mgqrlaelekrlkqleerleeleq 25 
                 m++r +++++r ++++er+++l +
  EHU00297.1 120 MDRRFDKVDQRFDKVDERFDKLDA 143
                 555555555555555555555543 PP

>> E2R135  Coiled-coil receptor-binding R-domain of colicin E2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.011       4.2       9      53 ..       4      48 ..       1      57 [. 0.77
   2 !    9.6   0.0    0.0027       1.1       4      52 ..      27      75 ..      26      78 .. 0.88
   3 !    7.9   0.0    0.0089       3.6       5      52 ..      56     103 ..      52     115 .. 0.68
   4 ?    3.3   0.0      0.24        97       4      35 ..     118     149 ..     115     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.011
      E2R135  9 eydkakaeldaedkniatlnsriastekaipgaraavqeadkkvk 53
                 +d   + ld  dk +  l+sr+   +k   g  + ++  dk++ 
  EHU00297.1  4 RFDGLDSRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLD 48
                577777888888999999999999888888888888888888765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0027
      E2R135  4 eglkreydkakaeldaedkniatlnsriastekaipgaraavqeadkkv 52
                +g+ + +d   + ld  dk +  l+sr+   +k + g  + ++  dk++
  EHU00297.1 27 DGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRL 75
                5788899999999******************999999999998888875 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0089
      E2R135   5 glkreydkakaeldaedkniatlnsriastekaipgaraavqeadkkv 52 
                 g+ +  d   + ld  dk +  ++sr+   +k + g  + ++  dk++
  EHU00297.1  56 GVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLDGLDCRLDGVDKRL 103
                 556666666777777777777777777777777777777776666665 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.24
      E2R135   4 eglkreydkakaeldaedkniatlnsriaste 35 
                 +g+ r +dk    +d  d     l++r  s +
  EHU00297.1 118 DGMDRRFDKVDQRFDKVDERFDKLDARFESLN 149
                 68999999999999999999999999987755 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.23        90      12      28 ..       5      21 ..       2      32 .. 0.67
   2 ?    2.9   0.0      0.25     1e+02      11      28 ..      32      49 ..      29      55 .. 0.72
   3 ?    1.4   0.0      0.72   2.9e+02      14      27 ..      56      69 ..      51      74 .. 0.67
   4 ?    3.7   0.0      0.14        56      15      27 ..      71      83 ..      63      94 .. 0.71
   5 ?    0.2   0.0       1.8   7.1e+02      14      25 ..      84      95 ..      79     100 .. 0.59
   6 ?    3.4   0.1      0.18        70      17      24 ..     108     115 ..      92     129 .. 0.59
   7 ?    6.2   0.5     0.023         9      12      29 ..     124     141 ..     120     153 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.23
        MtrG 12 fnevkkrLdeieekvef 28
                f+ +++rLd ++++++ 
  EHU00297.1  5 FDGLDSRLDGVDKRLDG 21
                66667777777777664 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.25
        MtrG 11 dfnevkkrLdeieekvef 28
                 f+ +++rLd ++++++ 
  EHU00297.1 32 RFDGLDSRLDGVDKRLDG 49
                577788888888888775 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.72
        MtrG 14 evkkrLdeieekve 27
                 v+krLd ++ +++
  EHU00297.1 56 GVDKRLDGLDSRLD 69
                46677777777665 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.14
        MtrG 15 vkkrLdeieekve 27
                v+krLd i+ +++
  EHU00297.1 71 VDKRLDGIDSRLD 83
                6677777777665 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 1.8
        MtrG 14 evkkrLdeieek 25
                 v+krLd ++ +
  EHU00297.1 84 GVDKRLDGLDCR 95
                456666666655 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.18
        MtrG  17 krLdeiee 24 
                  rLd i++
  EHU00297.1 108 YRLDGIDK 115
                 33333333 PP

  == domain 7  score: 6.2 bits;  conditional E-value: 0.023
        MtrG  12 fnevkkrLdeieekvefv 29 
                 f++v++r d+++e+ +  
  EHU00297.1 124 FDKVDQRFDKVDERFDKL 141
                 555555555555554433 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.028        11      56      61 ..      42      47 ..       1     110 [. 0.65
   2 !    8.2   0.0    0.0079       3.2      17      45 ..     122     150 ..      92     156 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.028
         CLZ 56 ssqrkL 61
                 ++++L
  EHU00297.1 42 GVDKRL 47
                333222 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0079
         CLZ  17 eeaakagaeqkeleekverLessLeaLqt 45 
                 +++ k  +  ++++e+ ++L+++ e+L++
  EHU00297.1 122 RRFDKVDQRFDKVDERFDKLDARFESLNN 150
                 22222222333333333333333333333 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.75     3e+02      63      89 ..      10      36 ..       3      40 .. 0.81
   2 !   10.7   0.0    0.0013      0.53      15      89 ..      19      92 ..      12     121 .. 0.74
   3 ?    5.8   0.0     0.047        19      59      89 ..     111     141 ..      95     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.75
  Snapin_Pallidin 63 kKLvnikkrmsslnerlqklkkRaekL 89
                      +L  + kr+  l +rl  + kR + L
       EHU00297.1 10 SRLDGVDKRLDGLDSRLDGVDKRFDGL 36
                     588889999999999999999987765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0013
  Snapin_Pallidin 15 ldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRaekL 89
                     ld ld++l  + +  + L ++ld   ++L+ l    +  v ++l+    +L  + kr+  + +rl  + kR++ L
       EHU00297.1 19 LDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLD-GVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLDGL 92
                     6667777777777777777777777777777777776.5557777777777777777777777777777777765 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.047
  Snapin_Pallidin  59 keyakKLvnikkrmsslnerlqklkkRaekL 89 
                      +   k+L  + +r  ++ +r  k+ +R +kL
       EHU00297.1 111 DGIDKRLDGMDRRFDKVDQRFDKVDERFDKL 141
                      5556788888888888888888888888887 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00011     0.042      39     118 ..      11      85 ..       2     107 .. 0.50
   2 ?    4.7   0.0      0.07        28      40      80 ..     103     149 ..      84     156 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00011
  Baculo_PEP_C  39 lldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnl 118
                    ld ++++L+ l+++l      +d+r+d l ++L+   ++l d l+++L+++++ l  L s + ++ + L ++ + l+++
    EHU00297.1  11 RLDGVDKRLDGLDSRLDG----VDKRFDGLDSRLDGVDKRL-DGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGV 85 
                   344444444444444333....4444444444444433333.35555555555555555555555555555544444443 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.07
  Baculo_PEP_C  40 ldaietqLnalsedlksllaeldt......rldtlltnLtdalnalq 80 
                   ld i+ +L+ ++++l  +   +d+      ++d+ +++L++   +l+
    EHU00297.1 103 LDGIDYRLDGIDKRLDGMDRRFDKvdqrfdKVDERFDKLDARFESLN 149
                   44444444444444444332222222222233444444444444443 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.37   1.5e+02      17      25 ..      23      31 ..       3      51 .. 0.52
   2 ?    4.6   0.0      0.11        42      13      27 ..      47      61 ..      28      77 .. 0.52
   3 ?    5.0   0.0     0.077        31       2      29 ..      57      84 ..      56      93 .. 0.76
   4 ?    4.8   0.1     0.091        36      18      20 ..     108     110 ..      77     152 .. 0.57
   5 ?    0.6   0.0       1.8   7.2e+02       5      27 ..     130     152 ..     126     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.37
    CCDC-167 17 rerLeaver 25
                  rL+ v++
  EHU00297.1 23 DSRLDGVDK 31
                333333333 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.11
    CCDC-167 13 lascrerLeaverrl 27
                l  +  rL+ v++rl
  EHU00297.1 47 LDGLDSRLDGVDKRL 61
                333333333333333 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.077
    CCDC-167  2 vaseIdkleeklascrerLeaverrlrk 29
                v + +d+l+ +l  + +rL+ +++rl +
  EHU00297.1 57 VDKRLDGLDSRLDGVDKRLDGIDSRLDG 84
                5667788888888888888888888865 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.091
    CCDC-167  18 erL 20 
                  rL
  EHU00297.1 108 YRL 110
                 222 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 1.8
    CCDC-167   5 eIdkleeklascrerLeaverrl 27 
                   dk++e+  ++  r e++++rl
  EHU00297.1 130 RFDKVDERFDKLDARFESLNNRL 152
                 56888888999999999999887 PP

>> Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.058        23     144     162 ..       2      20 ..       1      29 [. 0.56
   2 ?    5.9   0.2     0.026        10     149     163 ..      35      49 ..      26      63 .. 0.48
   3 ?    5.6   0.4     0.033        13     144     162 ..      58      76 ..      50      91 .. 0.63
   4 ?    5.5   0.8     0.035        14     143     160 ..     106     123 ..      82     142 .. 0.59
   5 ?    0.4   0.0       1.2   4.9e+02     140     161 ..     131     152 ..     125     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.058
  Glyco_H_20C_C 144 diRlGGllaRlesaeeRLe 162
                    d R+ Gl +Rl+ + +RL+
     EHU00297.1   2 DKRFDGLDSRLDGVDKRLD 20 
                    5566666666666666654 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.026
  Glyco_H_20C_C 149 GllaRlesaeeRLea 163
                    Gl +Rl+ + +RL++
     EHU00297.1  35 GLDSRLDGVDKRLDG 49 
                    444444444444432 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.033
  Glyco_H_20C_C 144 diRlGGllaRlesaeeRLe 162
                    d Rl Gl +Rl+ + +RL+
     EHU00297.1  58 DKRLDGLDSRLDGVDKRLD 76 
                    5566666666666666654 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.035
  Glyco_H_20C_C 143 ldiRlGGllaRlesaeeR 160
                    +d Rl G+ +Rl+ + +R
     EHU00297.1 106 IDYRLDGIDKRLDGMDRR 123
                    444555555555555554 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 1.2
  Glyco_H_20C_C 140 fevldiRlGGllaRlesaeeRL 161
                    f+ +d R+  l aR+es ++RL
     EHU00297.1 131 FDKVDERFDKLDARFESLNNRL 152
                    6668889999999999999888 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0012      0.47      92      92 ..      97      97 ..       1     153 [. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
     DUF3552 92 e 92
                +
  EHU00297.1 97 D 97
                2 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.069        27      15      76 ..      15      76 ..       3      84 .. 0.51
   2 !   13.3   0.0   0.00016     0.063       6      81 ..      76     151 ..      72     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.069
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHH CS
  Laminin_II 15 vleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklk 76
                v + l +l+ +l+ + +   ++++ ++ +++ ++ +   ++ + +    L+  ++ + ++l 
  EHU00297.1 15 VDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLD 76
                44555555555555555555555555555555555444444444444444444444444444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00016
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
  Laminin_II   6 aeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkql 81 
                 + +++ +  v + l +l+ +l+ + + l +i+  ++ +++ ++ + +  + + +   k+++  ++L +++++l+++
  EHU00297.1  76 DGIDSRLDGVDKRLDGLDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNNR 151
                 5678888999***************************************************************987 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0     0.001       0.4     345     429 ..       4      88 ..       2      93 .. 0.90
   2 !    7.7   0.0    0.0022      0.89      96     151 ..      96     151 ..      71     154 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
                 THHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 345 klrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrk 429
                 ++++l+++l+ + k+++ l+ +l+  +  +  l ++l+ ++++l+ ++++++ +++ l++l +      ++ld i+++l  + ++
  EHU00297.1   4 RFDGLDSRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKR 88 
                 67899999*****************************************************999999999999999998877666 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0022
                 HHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT CS
        EzrA  96 fkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkk 151
                 +  + k+l+ ++ +ld ++++++ +   ++++ +   k  e+ +kl  ++++l+++
  EHU00297.1  96 LDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNNR 151
                 34455555555555555555555555555555555555555555555555554443 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.7    0.0012       0.5      15      78 ..      17      77 ..       1     106 [. 0.50
   2 !    9.4   0.7    0.0031       1.2      24      73 ..      99     149 ..      77     153 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0012
     DUF4164 15 aaldsLEkavdrrleaerkr.deleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLka 78
                + ld L++++d       kr d l++++  +++    L+ +Ld++  r+  l +  + v +rL+ 
  EHU00297.1 17 KRLDGLDSRLD----GVDKRfDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDG 77
                33333333322....22222244444444444444444444444444444444444444444443 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0031
     DUF4164  24 vdrrleaerkr.deleaeiealgedrsRLaeeLdqaearaarleevnrEvs 73 
                 vd+rl+    r d +++++  +++   + ++++d++  r  +l +  + ++
  EHU00297.1  99 VDKRLDGIDYRlDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLN 149
                 344444433335666666666666666666666666666666655444444 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05     0.005     434     578 ..       4     148 ..       1     153 [. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
  Myosin_tail_1 434 kvsklqaelesvsslleeaegksiklskdvsslesqlqDtqellqeetrqkLalssrlrqleeeknalkeqleeeeeakknvekqlstlqaqlsdl 529
                    +   l++ l+ v++ l+  +++   + k    l+s+l+ +++ l+    +   + +rl  l+    ++  +l+   +    v+k+l  l+ +l  +
     EHU00297.1   4 RFDGLDSRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLDGLDCRLDGV 99 
                    66778899********************************9999877666667999**************************************** PP

  Myosin_tail_1 530 kkkleeeasavealeeakkrlqrelealtqrleekaaaydklektkkRl 578
                     k+l+     ++ ++     + r ++++ qr+++  + +dkl+   + l
     EHU00297.1 100 DKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESL 148
                    ******************************************9765555 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0027       1.1      27      89 ..      92     152 ..       3     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0027
  Occludin_ELL  27 lhaeleevskkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkrceyLkekL 89 
                   l  +l+ v k++  ++ +l+  +++ + ++++ +++ q++ k+  d+++ +  +r+e L+++L
    EHU00297.1  92 LDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKV--DERFDKLDARFESLNNRL 152
                   5567888888888888899999888889999999999999988..888999999999998887 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.6e-05     0.018     161     256 ..      37     145 ..       2     156 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 161 krlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlk...ekleekkerlkklkerle...........lle 243
                   +++l+   +rl+ l+srl   +++l+   +rld + +rl+  ++++l+   +rl+ l  rl    ++l+  + rl+ + +rl+           +++
    EHU00297.1  37 DSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDG-IDSRLDGVDKRLDGLDCRLDgvdKRLDGIDYRLDGIDKRLDgmdrrfdkvdqRFD 132
                   23444444455555555555555555555555555555555.5555555555555555555335534444444443333333344442223333344 PP

  Exonuc_VII_L 244 ekkerleeleekl 256
                   + +er+++l ++ 
    EHU00297.1 133 KVDERFDKLDARF 145
                   4444444444444 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.024       9.4      71      91 ..      47      67 ..       3     105 .. 0.60
   2 ?    4.5   0.0     0.089        35      62      91 ..     115     144 ..      95     153 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.024
        COG2 71 leevesplaaarkkvesvrek 91
                l+ ++s l  + k+++ + + 
  EHU00297.1 47 LDGLDSRLDGVDKRLDGLDSR 67
                333333333333333333333 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.089
        COG2  62 ghLvglqeeleevesplaaarkkvesvrek 91 
                 ++L g++++ ++v++ + ++ ++++++ + 
  EHU00297.1 115 KRLDGMDRRFDKVDQRFDKVDERFDKLDAR 144
                 345555555555555555555555444443 PP

>> DUF241  Arabidopsis protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.022       8.6     188     203 ..      51      61 ..       2     124 .. 0.61
   2 ?    5.9   0.0     0.025       9.9     194     226 ..     120     154 ..      99     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
      DUF241 188 lssskkekvqsalkrl 203
                  s+     ++ + krl
  EHU00297.1  51 DSR-----LDGVDKRL 61 
                 222.....12222222 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.025
      DUF241 194 ek..vqsalkrleeleecieelEeglekvfRrLIk 226
                  +   +++ +r+++++e  ++l++  e++  rLI 
  EHU00297.1 120 MDrrFDKVDQRFDKVDERFDKLDARFESLNNRLIW 154
                 335589999************************95 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.37   1.5e+02      67     100 ..      10      43 ..       3      50 .. 0.75
   2 ?    4.3   0.0     0.085        34      70     100 ..      41      71 ..      29      91 .. 0.55
   3 ?    1.7   0.0      0.55   2.2e+02      67      89 ..      73      95 ..      55     123 .. 0.53
   4 ?    5.2   0.0     0.045        18      73     101 ..     114     142 ..     104     153 .. 0.50

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
  DASH_Spc19  67 ellekaekeleklerreetLkaklelqegrlsna 100
                 + l+ ++k l+ l++r +   ++++ +++rl+  
  EHU00297.1  10 SRLDGVDKRLDGLDSRLDGVDKRFDGLDSRLDGV 43 
                 5677788888888888888888888888888764 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
  DASH_Spc19  70 ekaekeleklerreetLkaklelqegrlsna 100
                 + ++k l+ l++r +   ++l+ +++rl+  
  EHU00297.1  41 DGVDKRLDGLDSRLDGVDKRLDGLDSRLDGV 71 
                 4444444444444444444444444444443 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.55
                HHHHHHHHHHHHHHHHHHHHHHH CS
  DASH_Spc19 67 ellekaekeleklerreetLkak 89
                + l+ +++ l+  ++r + L  +
  EHU00297.1 73 KRLDGIDSRLDGVDKRLDGLDCR 95
                33333333333333333333333 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.. CS
  DASH_Spc19  73 ekeleklerreetLkaklelqegrlsnae 101
                 +k l+ ++rr ++  +++++ + r ++ +
  EHU00297.1 114 DKRLDGMDRRFDKVDQRFDKVDERFDKLD 142
                 55555555555555555555555554432 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.017       6.7      66      77 ..      60      71 ..       2     153 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.017
     DUF4140 66 elkalraeleel 77
                +l+ l+++l+ +
  EHU00297.1 60 RLDGLDSRLDGV 71
                233333333333 PP

>> ACP_PD  Acyl carrier protein phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.56   2.2e+02      62      62 ..      58      58 ..       4     104 .. 0.66
   2 ?    8.8   0.0    0.0052       2.1      58      99 ..     110     148 ..     101     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.56
      ACP_PD 62 e 62
                +
  EHU00297.1 58 D 58
                1 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0052
      ACP_PD  58 legieralqrmarrlkrasklaeaieeleenyaeleadFlef 99 
                 l+gi++ l++m+rr+ + +   + +++++e+ ++l+a F+++
  EHU00297.1 110 LDGIDKRLDGMDRRFDKVD---QRFDKVDERFDKLDARFESL 148
                 7899999999999998777...66777777777777777665 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00036      0.14      31     125 ..      33     126 ..       3     153 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---SSHHHHHHHHHHHHHHHS- CS
       Nup54  31 FedLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilrsrgyaldaeEeelrarletleaqlnd 125
                 F+ L +R++  +k ++ + +rl+ + +rl+ l  ++   + +rl+ + +r     +Rl  l ++l+ + +r  ++d   + + +rl+ ++++ ++
  EHU00297.1  33 FDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLD-SRLDGVDKRLDGIDSRLDGVDKRLDGLDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDK 126
                 777888888888888888888888888888887.4444455555555555555555555555555555555444444444444444444444443 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00022     0.088     112     171 ..     109     167 ..      29     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00022
  EMP24_GP25L 112 kletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvav 171
                   l+ + ++l+ +++++d++ + ++   er ++l +  es+n+r++w  ++   +l+++a+
   EHU00297.1 109 RLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNNRLIWTFMVPA-ILAVFAW 167
                  6888999************************************987655554.4444444 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4    0.0016      0.63      18      75 ..      19      76 ..       3     153 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0016
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil 18 laglenslesekvsreelikqkdelesllasleseaaerekrlreleakldealknle 75
                   l gl+  l++     + l  + d +++ l  l+s+ +  +krl  l+++ld + k l+
     EHU00297.1 19 LDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLD 76
                   5555555555555555555555555555555555555555555555555555444443 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.07        28     242     265 ..      33      56 ..       2     102 .. 0.58
   2 ?    6.8   0.0    0.0078       3.1     231     271 ..     106     146 ..      94     157 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.07
        RmuC 242 fekfgedleklgkklekaqksydk 265
                 f ++  +l+ + k+l+ + + +d 
  EHU00297.1  33 FDGLDSRLDGVDKRLDGLDSRLDG 56 
                 333333333333333333333333 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0078
        RmuC 231 iaellgelydkfekfgedleklgkklekaqksydkavkkle 271
                 i  +l  + +++ ++  +++k+ ++++k+ + +dk+  ++e
  EHU00297.1 106 IDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFE 146
                 55555555566666666666666666666666666444433 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.065        26      84     135 ..      15      66 ..       6      72 .. 0.79
   2 ?    4.7   0.0     0.094        37      93     131 ..      52      90 ..      40     114 .. 0.56
   3 ?    3.6   0.1       0.2        81     105     134 ..     113     142 ..      86     150 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.065
       HrpB7  84 legrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrr 135
                 +  r+  ++++l    +++d    ++  +++++  +d+++d +++r++ l+ 
  EHU00297.1  15 VDKRLDGLDSRLDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDS 66 
                 5667777777888888888889999999999999999999999999987765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.094
       HrpB7  93 aelaaarqaldaaedavaatarkiaRndaqidacrerie 131
                 ++l    ++ld    ++  +++++   d+++d +++r++
  EHU00297.1  52 SRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLD 90 
                 444444444444444444444444444444444444444 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.2
       HrpB7 105 aedavaatarkiaRndaqidacrerierlr 134
                   +++   +r+  + d + d+++er ++l+
  EHU00297.1 113 IDKRLDGMDRRFDKVDQRFDKVDERFDKLD 142
                 344444455555555555555555555555 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0021      0.83      85     138 ..      38      91 ..      26     153 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0021
  MscS_porin  85 qrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLns 138
                 +rl+ +  +l  l ++l   +++l  l +r++ + ++l     rl+ + +rL++
  EHU00297.1  38 SRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRLDGVDKRLDG 91 
                 444444444444444444444444444444444444444444444444444443 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.023       9.1      47      74 ..      35      62 ..       4     103 .. 0.52
   2 ?    3.9   0.0     0.061        24      60      89 ..     111     140 ..      95     160 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.023
                HHHHHHHHHHHIIIIIIIIIIIIIIIII CS
       APG17 47 glkqQlkllekirkslerklekgkeefk 74
                gl++ l+ ++k  ++l  +l+ ++++++
  EHU00297.1 35 GLDSRLDGVDKRLDGLDSRLDGVDKRLD 62
                2222333333333333333333333333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.061
                 IIIIIIIIIIIIIIIHHHHHHHHHHHHHHH CS
       APG17  60 kslerklekgkeefkdlikeldaanerLek 89 
                 +++ ++l+ ++++f+++++++d+++er +k
  EHU00297.1 111 DGIDKRLDGMDRRFDKVDQRFDKVDERFDK 140
                 344444444444444444444433333222 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0023      0.91     156     245 ..      41     133 ..       1     151 [. 0.37

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0023
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeeles.id..keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 + ++k+ + ld+ l+ ++++ + l ++l+   ++ + ++s +d   ++L  l  +l+ +++ ++    +l+   ++l+  + ++++++++ ++
  EHU00297.1  41 DGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSrLDgvDKRLDGLDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDK 133
                 333333333333333333333333333332222222222221111222222222222222222222222222222222222222222222222 PP

>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.024       9.7      25      71 ..      26      72 ..       2      86 .. 0.61
   2 ?    4.4   0.0     0.025       9.8      25      79 ..      89     143 ..      83     155 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.024
      Sec3_C 25 llesdkkveelkkdidkalkecdeldalltlysveLstlsedieyIE 71
                l  +dk+++ l +++d + k +d ld++l+  ++ L  l + ++ ++
  EHU00297.1 26 LDGVDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDSRLDGVD 72
                44455666666666666666666666666666666666655555554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.025
      Sec3_C  25 llesdkkveelkkdidkalkecdeldalltlysveLstlsedieyIEsqnngLQv 79 
                 l  +d++ + + k++d +   +d +d++l+ ++  + ++ +  +++++   +L  
  EHU00297.1  89 LDGLDCRLDGVDKRLDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDA 143
                 5567888888888888888888888888888888888888888888877666653 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       5.9   2.4e+03      14      34 ..       5      25 ..       2      39 .. 0.70
   2 ?   -0.5   0.0       3.7   1.5e+03      14      33 ..      33      52 ..      22      73 .. 0.68
   3 ?    0.9   0.0       1.4   5.7e+02      32      32 ..      93      93 ..      62     123 .. 0.60
   4 ?    7.0   0.1     0.017       6.9      13      39 ..     123     149 ..     120     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 5.9
                XTHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC 14 YdnIEqkvedideeIaaLeek 34
                +d    +++ +d+ +  L  +
  EHU00297.1  5 FDGLDSRLDGVDKRLDGLDSR 25
                666677777788777776653 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.7
                XTHHHHHHHHHHHHHHHHHH CS
     Osmo_CC 14 YdnIEqkvedideeIaaLee 33
                +d    +++ +d+ +  L  
  EHU00297.1 33 FDGLDSRLDGVDKRLDGLDS 52
                55555566666666655554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1.4
                H CS
     Osmo_CC 32 e 32
                 
  EHU00297.1 93 D 93
                2 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.017
                 XXTHHHHHHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC  13 hYdnIEqkvedideeIaaLeekRqrLv 39 
                 ++d++ q+ + +de   +L ++ ++L 
  EHU00297.1 123 RFDKVDQRFDKVDERFDKLDARFESLN 149
                 799****************99977775 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.62   2.5e+02      39      76 ..      29      66 ..      16      70 .. 0.62
   2 ?    2.0   0.0      0.65   2.6e+02      39      78 ..      43      82 ..      34      84 .. 0.72
   3 ?   -0.2   0.0         3   1.2e+03      53      78 ..      99     124 ..      83     127 .. 0.62
   4 ?    4.2   0.1      0.13        53      37      68 ..     125     156 ..     121     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.62
        KxDL 39 sqerlaklrarfkqgtkllkevkkdLesifkkirslka 76
                +++r+  l +r+    k l  + + L+ + k+++ l +
  EHU00297.1 29 VDKRFDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGLDS 66
                44555556666665666666666666666666666665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.65
        KxDL 39 sqerlaklrarfkqgtkllkevkkdLesifkkirslkakl 78
                +++rl  l +r+    k l  + + L+ + k+++ + ++l
  EHU00297.1 43 VDKRLDGLDSRLDGVDKRLDGLDSRLDGVDKRLDGIDSRL 82
                4567777777777777777777778888888877777665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 3
        KxDL  53 gtkllkevkkdLesifkkirslkakl 78 
                   k l  +   L+ i k+++ + +++
  EHU00297.1  99 VDKRLDGIDYRLDGIDKRLDGMDRRF 124
                 44555556666777777777777665 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.13
        KxDL  37 alsqerlaklrarfkqgtkllkevkkdLesif 68 
                 +++++r+ k+ +rf +      ++++ L ++f
  EHU00297.1 125 DKVDQRFDKVDERFDKLDARFESLNNRLIWTF 156
                 56788888888888888888888888888876 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0019      0.74      87     132 ..     103     148 ..      65     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0019
         GAS  87 lknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaa 132
                 l+ +  rl   +k l  +    + + qrf+kv + +d+l ++fe+ 
  EHU00297.1 103 LDGIDYRLDGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESL 148
                 566666788888999999999999*******************985 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.11        44     406     418 ..      41      55 ..       6     111 .. 0.55
   2 ?    5.0   0.1     0.017       6.9     379     411 ..     119     151 ..      96     165 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                    HHHHHHHH..HHHHH CS
  Hemagglutinin 406 eeldkkvd..dgfld 418
                    + +dk++d  d +ld
     EHU00297.1  41 DGVDKRLDglDSRLD 55 
                    333333321112222 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.017
                    HHHHHHHHTTTEEEBXSSXXTTTTHHHHHHHHH CS
  Hemagglutinin 379 kvnsliekenkqleavgkelnelekrieeldkk 411
                     ++   +k  +++++v + +++l+ r e l+++
     EHU00297.1 119 GMDRRFDKVDQRFDKVDERFDKLDARFESLNNR 151
                    223334555566666666666666666666655 PP

>> DUF1283  Protein of unknown function (DUF1283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       8.3   3.3e+03      39      54 ..       2      17 ..       1      23 [. 0.78
   2 ?    4.5   5.5       0.1        41      37      65 ..     126     154 ..      17     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 8.3
     DUF1283 39 ekefdkadkaidkrdk 54
                +k+fd  d  +d  dk
  EHU00297.1  2 DKRFDGLDSRLDGVDK 17
                6889999988887665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.1
     DUF1283  37 rvekefdkadkaidkrdkCeksanvnaYW 65 
                 +v+++fdk+d+ +dk d+  +s n    W
  EHU00297.1 126 KVDQRFDKVDERFDKLDARFESLNNRLIW 154
                 67788999999999999888888766555 PP

>> TraF_2  F plasmid transfer operon, TraF, protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   6.3      0.38   1.5e+02      42      71 ..      35      64 ..       1      96 [. 0.50
   2 ?    8.2   1.7    0.0035       1.4      31      82 ..      97     152 ..      88     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.38
      TraF_2 42 dlsdildgleaavnaasadetq.vdeaaddl 71
                 l+++ldg+++  ++++ +  + vd+++d l
  EHU00297.1 35 GLDSRLDGVDKRLDGLDSR-LDgVDKRLDGL 64
                3333333222332222222.11222222222 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0035
      TraF_2  31 gdvdnlvDkiD....dlsdildgleaavnaasadetqvdeaaddlnalLedlggdg 82 
                   vd+ +D iD     ++++ldg+++  ++ +++  +vde++d+l+a +e+l++  
  EHU00297.1  97 DGVDKRLDGIDyrldGIDKRLDGMDRRFDKVDQRFDKVDERFDKLDARFESLNNRL 152
                 56777777777777788888888888888877775559999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 1221.21
//
Query:       EHU00298.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00298.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00298.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00298.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00298.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00298.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHU00298.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00298.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00298.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHU00298.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00298.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00298.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHU00298.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00298.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00298.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00298.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHU00298.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00298.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2706.32
//
Query:       EHU00299.1  [L=58]
Description: hypothetical protein CKS_2532 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 487.87
//
Query:       EHU00300.1  [L=432]
Description: xanthine/uracil/thiamine/ascorbate permease family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-56  191.5  46.1    2.5e-56  191.1  46.1    1.2  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1  46.1   1.4e-60   2.5e-56       2     387 ..      18     392 ..      17     394 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 1.4e-60
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllga 95 
                       ++++g++++lam + l v+P ++g+  g  ++   ++ at+la++i+++l+ li++++++++ g++++++  ++++l     ++++ + +lga
       EHU00300.1  18 TEIIAGITTFLAMAYILFVNPSILGAT-G--MDKGAVFVATCLAAAIGSVLMGLIANYPIALAPGMGLNAFFTYTVVLH----MGYTWQIALGA 104
                      579************************.3..4555*********************************99997888888....59********* PP

                      HHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHH CS
  Xan_ur_permease  96 llvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpiLi 189
                      +++++v+f+ +s++++r+++++ ip    +++  +iGl+la ia++++g++  +     v+ ++l+  +  + +++++++v+l+   +++++Li
       EHU00300.1 105 VFLSAVIFFALSIFKIREWIIKSIPLPLRAGIAAGIGLFLAIIALEGAGIVVDNPA-TLVGIGDLTKPGPLLAMLGFIIIVVLEARRVTGAVLI 197
                      ***************************************************84433.58*********************************** PP

                      HHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH...H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII..IIIHHHHHHHHHHHH CS
  Xan_ur_permease 190 giiagwllalfmgivnlspevseapwfqlpsplkfgtpl.fnlgliltvlavalvavvesvGdiravakvvgrslkp..kpdlrralladGlat 280
                      gi++++++++ +g +++ +++s+ p + + + +++     fn gli +++a+++v v++++G++ +v k +g+ +++   p+++ral+ad+ a 
       EHU00300.1 198 GILIITFISMGIGLTPFGGVFSAPPSIAP-TFMHLDIAGaFNVGLISVIFAFLFVDVFDNTGTLLGVTKRAGLADEEgnVPKMGRALVADSAAA 290
                      *******************7777777755.5666655445********************************99999999************** PP

                      HHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHH CS
  Xan_ur_permease 281 llsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnlliva 374
                      l+++llG++ +t+y+e++++v+++    +r+++ta v+++l+ l  ++++l+ss+P ++ ++++l+ +++++ sg+++ +++d++ a  ++++a
       EHU00300.1 291 LFGSLLGTSTTTSYVESAAGVSAG----GRTGLTAVVVAVLFLLALFFSPLASSVPVYA-TAPALLFVAVLMTSGLAENDWKDITTAAPVTVTA 379
                      ************************....*******************************.********************************** PP

                      HHHHHHHH----- CS
  Xan_ur_permease 375 vslvlGlgvatvp 387
                      +++ l+ ++a ++
       EHU00300.1 380 LTMPLTYSIANGI 392
                      ******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3632.64
//
Query:       EHU00301.1  [L=247]
Description: putative response regulator protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-24   84.5   0.9    7.2e-24   84.1   0.3    1.5  2  Response_reg  Response regulator receiver domain
    1.9e-22   79.1   0.3    1.9e-22   79.1   0.3    1.7  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.3     8e-28   7.2e-24       1     110 [.       5     114 ..       5     116 .. 0.96
   2 ?   -2.8   0.0      0.79   7.1e+03      33      46 ..     181     194 ..     167     205 .. 0.64

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 8e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vl+vdDd +v++ll+++l e+ + +v  + +gkeal+++ ++  + l++lD+++p+ +Gl +l++++++ p++ vi+lt+ ++e+++v +l++gadd
    EHU00301.1   5 VLVVDDDSAVCDLLQDALSEHAL-RVYRCHQGKEALAMVSAHPdIALVMLDMMLPDTNGLLVLQQLQRQRPDILVIMLTGMGSESEMVVGLEMGADD 100
                   8**********************.***************99877***************************************************** PP

                   EEESSG-HHHHHHH CS
  Response_reg  97 flsKpfdpeeLlka 110
                   +++Kpf+p+ ++++
    EHU00301.1 101 YIAKPFNPRVVVAR 114
                   ********988876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.79
                   HHHHHHHHHHHESE CS
  Response_reg  33 kealellkeekvdl 46 
                   +++lel+++e++d+
    EHU00301.1 181 DQLLELTHSETMDV 194
                   55666666666665 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.49   4.3e+03      48      61 ..     110     123 ..     109     127 .. 0.80
   2 !   79.1   0.3   2.2e-26   1.9e-22       2      77 .]     155     230 ..     153     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.49
                  HHHHHHHHHHHTTT CS
  Trans_reg_C  48 vhisrLRkkLedde 61 
                  v ++r R  L+ ++
   EHU00301.1 110 VVVARARAALRRSG 123
                  789999*9999865 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 2.2e-26
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  e+v lt+ e+ lL+++++++++v++r++Lle    e+ dv drt+dv+i rLR+k+e+++++p lI+t+rg GY++
   EHU00301.1 155 ETVPLTQGEYTLLRAMVRHARKVLTRDQLLELTHSETMDVFDRTIDVQIMRLRRKIEANPHQPGLIRTIRGLGYVF 230
                  5699**********************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1884.03
//
Query:       EHU00302.1  [L=362]
Description: putative carbohydrate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-35  122.2   0.0    4.6e-35  121.4   0.0    1.3  1  PfkB          pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.093   13.0   0.2       0.33   11.2   0.1    2.0  2  Hairy_orange  Hairy Orange


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.0   5.1e-39   4.6e-35      23     297 ..      28     329 ..       7     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 5.1e-39
                 TSEEEESEEEEEEESHHHHHHHHHHHTT..-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHHHHH CS
        PfkB  23 gelvevktveksaGGagaNvAvalarlg..advafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedgertivfnrgaaadltkee 119
                 g l e ++ ek aGGa++Nv   l+r+      a+ig +G+D  G+fll+ +k++++d + v++++d++t+++ +++  dg+rt+ f +ga++ l+  +
  EHU00302.1  28 GWLTEIQHSEKAAGGAPLNVLLTLSRMQctLPLAAIGLLGNDADGDFLLAMMKAAQIDYRLVQRTDDKPTAMTQVMTAPDGQRTFFFSPGANSLLDRPH 126
                 445588999*******************88889****************************************************************** PP

                 HH..HHHHHHGCTSEEEEES..............EECTTSHHHHHHHHHHHHHHTTE.EEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSC CS
        PfkB 120 le..ededlleeadllyisg..............llsselpeavleelaeaaknggt.fdpnlldplgaqfkeallellaladllkpneeElealtgek 201
                 +   +d + + +  +l +                 l +++ ++ + +  ++a+ +g+   + l +++g+ +++++l +l+  d+l  ne E++al+g  
  EHU00302.1 127 FAavDDTQRIFHLGYLLLLEtldgvdsefgtrsaRLLAHMQQRGYFTSLDLASRAGYfTSLDLASRAGD-YRPQVLPALRWLDYLVINELEAQALSGVL 224
                 *99955555555555544444888888888888888888888888888888888887555555555555.9**************************** PP

                 T......HSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE....SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT CS
        PfkB 202 l......edieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpav...pkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvq 291
                 l      + ++  ++a+++l ++g++  vv +  eGa+  e dge  ++++    +  +v ++GAGD+f++g+l a  eg+++   l++a+++A+++++
  EHU00302.1 225 LrdgrgiQPPAAFARAAQWLAEQGVRQRVVIHAPEGAWGREADGEGVWQPAwqlAPDAIVGSVGAGDAFCAGVLFASHEGEDMVSTLKLAHTCACFNLR 323
                 *******9*********************************88888888775667899**************************************999 PP

                 SSSSST CS
        PfkB 292 kkgaia 297
                   +a++
  EHU00302.1 324 AANATD 329
                 888875 PP

>> Hairy_orange  Hairy Orange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.7e-05      0.33      17      38 ..     145     169 ..     141     170 .. 0.91
   2 ?   -2.4   0.0      0.63   5.7e+03      24      34 ..     246     256 ..     240     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
  Hairy_orange  17 Laspegvdp..dvk.qrLlrHLqrc 38 
                   L++++gvd+  + + +rLl+H+q++
    EHU00302.1 145 LETLDGVDSefGTRsARLLAHMQQR 169
                   899******9*9999*******985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.63
  Hairy_orange  24 dpdvkqrLlrH 34 
                   + +v+qr++ H
    EHU00302.1 246 EQGVRQRVVIH 256
                   4589***9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2962.38
//
Query:       EHU00303.1  [L=286]
Description: putative aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-94  316.8   0.1    1.4e-94  316.7   0.1    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
     0.0042   16.5   0.2       0.02   14.3   0.1    2.0  2  AP_endonuc_2   Xylose isomerase-like TIM barrel
     0.0055   15.8   0.0     0.0079   15.3   0.0    1.4  1  FMN_dh         FMN-dependent dehydrogenase
  ------ inclusion threshold ------
       0.03   14.1   0.1        1.2    8.9   0.0    2.4  2  DSBA           DSBA-like thioredoxin domain
        0.1   11.5   0.0       0.15   11.0   0.0    1.2  1  Peripla_BP_5   Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.7   0.1     4e-98   1.4e-94       3     280 .]       6     285 ..       4     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 316.7 bits;  conditional E-value: 4e-98
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHHH CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaiea 98 
                    l + l++A+++gya+gafnv +++ ++a+++aae+++sP I++++e +++++   ++ ++e +r  a    k +vpv+l+lDHg ++e +++ai+ 
     EHU00303.1   6 LAQGLAHAQQQGYALGAFNVLDSHFLRALFDAAERQRSPFIINIAEVHFKYV--TLDQITEAIRFEAA---KHTVPVVLNLDHGLHFEAVMQAIRL 96 
                    56789********************************************666..78999999998887...568********************** PP

                    S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------...TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS..--T CS
  F_bP_aldolase  99 gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv...vaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpkpkLdf 191
                    gf+SvM+DgS+l++eeNi++t+evv+ aha+gvsvEaElG +gg e gv   +a+++ +Tdp  a+efv+etg+d+lAvaiGn+HG+yk +pkLdf
     EHU00303.1  97 GFTSVMFDGSTLSYEENIRQTREVVRAAHAVGVSVEAELGAVGGDEGGVlfgEADSEKFTDPRLAAEFVRETGIDTLAVAIGNAHGKYKGEPKLDF 192
                    **********************************************9999987788899************************************* PP

                    HHHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHG..GE-HHH-H.HHHHHHHHHHHHHHHHHHHHHTT-SS- CS
  F_bP_aldolase 192 erlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkke..kenkkydp.rkllkeaeeamkevvkekiellgsagk 280
                    +rl++i++++ vplVlHGgsg++d ++r+ai+lG+ KiN++t +++a+++av+++   +n +yd+  +ll+++e+a+ e+v++ ++++gsag+
     EHU00303.1 193 DRLAAIRQQTgVPLVLHGGSGISDADFRRAISLGIHKINFYTGMSQAALDAVERSlaSRNTRYDEfAELLMAVEKAICETVMQQMNIFGSAGQ 285
                    ****************************************************76665445555551577999*******************96 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   5.6e-06      0.02       4     111 ..      93     197 ..      90     203 .. 0.85
   2 ?   -0.6   0.0      0.21   7.7e+02      77     113 ..     220     262 ..     216     271 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.6e-06
                   HHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC...HTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCT CS
  AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypded...erearreesvdalkraielaaaLGapllvlhpGtagag 97 
                   a ++Gf++v++ g++l         ++r+ r+ +++++   +s+++  +  + de     +ea+  e + + + a+e+ ++ G+++l + +G+a+  
    EHU00303.1  93 AIRLGFTSVMFDGSTLSYEE-----NIRQTREVVRAAHAVGVSVEAELGAVGGDEGgvlFGEAD-SEKFTDPRLAAEFVRETGIDTLAVAIGNAHGK 183
                   6799*************996.....689999999888888777888888888777788866666.6679999********************99999 PP

                   TTSGHHHHHHHHHH CS
  AP_endonuc_2  98 pkgseeeawerlae 111
                   +kg+++ +++rla+
    EHU00303.1 184 YKGEPKLDFDRLAA 197
                   99999999999885 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.21
                   HHHHHHTBSEEEEEBCC......GBCTTTSGHHHHHHHHHHHH CS
  AP_endonuc_2  77 elaaaLGapllvlhpGt......agagpkgseeeawerlaesl 113
                   ++a  LG++ +++ +G       a  ++  s++++++ +ae l
    EHU00303.1 220 RRAISLGIHKINFYTGMsqaaldAVERSLASRNTRYDEFAELL 262
                   5666777777777777566666655556666666666666655 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-06    0.0079     185     241 ..     152     230 ..      21     232 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-06
                 H.....................THHHH.HHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE..-SHHHHHHHHHTTESEE CS
      FMN_dh 185 l...................kkasaaa.efvgkqldpsltwddikwlreqtklplvvKGv..ltaedakraveaGvdgi 241
                                     + a a + ++ +   +p+l++d ++ +r+qt +plv+ G   ++ +d +ra+ +G++ i
  EHU00303.1 152 SekftdprlaaefvretgidTLAVAIGnAHGKYKGEPKLDFDRLAAIRQQTGVPLVLHGGsgISDADFRRAISLGIHKI 230
                 044444444444445544431112222344445568***********************8778888999******9876 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.022        79     113     139 ..     107     133 ..      61     147 .. 0.82
   2 ?    8.9   0.0   0.00034       1.2     117     183 ..     152     218 ..     145     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.022
                 HHTSSS-TSSHHHHHHHHHHTTS.HHH CS
        DSBA 113 lwsegqaitddqellevaekaGldaee 139
                  +s  ++i+++ e++++a ++G+++e+
  EHU00303.1 107 TLSYEENIRQTREVVRAAHAVGVSVEA 133
                 678999*****************9876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00034
                 SS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHH.HHHHHHTT-SSSSEEEETTCEEEESSS CS
        DSBA 117 gqaitddqellevaekaGldaeeldealeseavkeavren.taaaqslgvtGvPtvvvdgkrmvfGad 183
                  +++td+   +e++++ G+d+ +++   + +++k + + + +++a+ ++ tGvP v+ +g+  +++ad
  EHU00303.1 152 SEKFTDPRLAAEFVRETGIDTLAVAIGNAHGKYKGEPKLDfDRLAAIRQQTGVPLVLHGGS-GISDAD 218
                 688999999**************99999999999999876256788899*********999.666665 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.3e-05      0.15       9      68 ..     208     267 ..     201     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
  Peripla_BP_5   9 lsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedk 68 
                   l G  +is+    +a+ l i++in  +G++   ++av    as   ++ e ae l++ +k
    EHU00303.1 208 LHGGSGISDADFRRAISLGIHKINFYTGMSQAALDAVERSLASRNTRYDEFAELLMAVEK 267
                   668889***********************************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2071.86
//
Query:       EHU00304.1  [L=230]
Description: ATP synthase delta chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-91  304.9   0.0    2.8e-91  304.8   0.0    1.0  1  Lyx_isomer  D-lyxose isomerase
     0.0072   16.0   0.5        1.8    8.3   0.1    2.4  2  Cupin_2     Cupin domain


Domain annotation for each model (and alignments):
>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.8   0.0   3.1e-95   2.8e-91       1     222 [.       1     221 [.       1     222 [. 0.99

  Alignments for each domain:
  == domain 1  score: 304.8 bits;  conditional E-value: 3.1e-95
  Lyx_isomer   1 mkRseineiikeaealieelkfklPpfakwtpeewkakkkeaeeivdnklGWDitdfgkgdfeklGltlftlRngnlkkkkkkklYaekllivkegqvt 99 
                 mkR+++n+ ++ ++++++++++ lP++a++  ++w++++++++eiv+ +lGWD+t fg +df ++GltlftlRng+ + +  +k+Yaek+++v+egqvt
  EHU00304.1   1 MKRADVNRHLQYTRDFFTRQDVPLPSWADYGIRQWRQQQEDITEIVALRLGWDLTSFGGDDFLQTGLTLFTLRNGSPHGTPWHKPYAEKVMHVREGQVT 99 
                 9************************************************************************************************** PP

  Lyx_isomer 100 pmHfHwskaeDiinRgGgklvielynsdedeklededvtvsvDGvkktvaageklrlkpGesitlepglyHkfwaekgkgkvlvgevstvndDetDnrF 198
                 pmH+H +k+eDiinRgGg+l++elyn++ ++k + ++vtvs+DG+++t+aag+++rl+ Ges+tl  g++H+fw+e+g g+vlvgevs+ ndD++Dn+F
  EHU00304.1 100 PMHYHPRKMEDIINRGGGNLIVELYNREGHDK-AATPVTVSLDGIRQTHAAGSQIRLSLGESVTLVAGVWHSFWGENGFGDVLVGEVSMPNDDDNDNVF 197
                 ***************************99987.789*************************************************************** PP

  Lyx_isomer 199 leplgRfseieedeeplhllvsdY 222
                 l+pl+Rf++++edeep++ll++dY
  EHU00304.1 198 LTPLARFNDLDEDEEPQRLLCNDY 221
                 ************************ PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0012        11       2      19 ..      90     107 ..      89     123 .. 0.85
   2 !    8.3   0.1    0.0002       1.8      31      58 ..     145     172 ..     126     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
                 EEEEETTEEEEEECSSSE CS
     Cupin_2   2 lvelppGesapshrHpge 19 
                 ++++  G+++p+h+Hp+ 
  EHU00304.1  90 VMHVREGQVTPMHYHPRK 107
                 69999***********86 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0002
                 EEEECTEEEEEETTEEEEE-TT-EEEEE CS
     Cupin_2  31 eltvdgeeveleaGdsvyfpagtpHrfr 58 
                   +  g +++l+ G+sv   ag++H f 
  EHU00304.1 145 QTHAAGSQIRLSLGESVTLVAGVWHSFW 172
                 55567899*****************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1708.55
//
Query:       EHU00305.1  [L=312]
Description: periplasmic-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-54  185.6  11.1    1.4e-54  185.4  11.1    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    2.8e-19   69.6   1.0    4.2e-19   69.0   0.4    1.4  2  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    6.7e-08   33.0   0.1    3.4e-07   30.7   0.0    2.0  2  Peripla_BP_3  Periplasmic binding protein-like domain
  ------ inclusion threshold ------
       0.11   13.0   0.6        1.5    9.3   0.1    2.5  2  Toprim_2      Toprim-like


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4  11.1   3.2e-58   1.4e-54       1     257 [.      29     284 ..      29     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 3.2e-58
                   EEEEES-SSTCHHHHHHHHHHHHHHH.TTCEEEEE.ECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT- CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaake.lgaevtvv.gdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsge 95 
                   igv+v d  npff ++++g+e  a++ +g++v+v+   ++ d  +Qv qi+++ia++vd ii++++d++++apa+k+a++aGI+Vva+d +   ++ 
    EHU00305.1  29 IGVTVGDLANPFFVQITKGAEMKARQlAGDNVKVTlVSSGYDLGQQVGQIDNFIAAKVDMIILNAADTKGIAPAVKRARDAGIVVVAVDVA---ADG 122
                   899***********************6777777779*******************************************************...999 PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESS CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaan 191
                     a ++ dn++aGe++ +y+a+ l++k g+vvi++G p ++ ++ r+eg + +lk +p+ik+++++++a  ++e + + ++ ll+anp +d+++a n
    EHU00305.1 123 ANATITSDNTQAGEMACKYIADRLKDK-GNVVIINGPPVSAVQN-RVEGCMTALKRHPDIKLLSSNQNAKGSREGGLEVMTGLLSANPkIDAVFAIN 217
                   9**************************.********99999997.**********************99******************66******** PP

                   CCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHH..HTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvvvtgqDatpealeai..kdGtidatvaqdpyelgyaavelavallkGk 257
                   d +a+ga  a ++a+++   +++g+D++p   ea+  k+  + at aqdp+ +++ ave+ +++l+Gk
    EHU00305.1 218 DPTAIGADLAAKQAQRNEF-FIVGVDGSPDGEEALkrKNSLFAATPAQDPQVMAAKAVEIGYDILQGK 284
                   ******9999999887665.5**************555556669***********************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.4   9.4e-23   4.2e-19       3     204 ..      28     233 ..      26     245 .. 0.86
   2 ?   -2.0   0.0      0.43   1.9e+03      59     106 ..     256     304 ..     248     308 .. 0.75

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 9.4e-23
                   EEEEEES-TTSHHHHHHHHHHHHHHHHH...TEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-TT CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakeh...gvdvlllaageeedla.kaidllkakgidgliiatsdts..fdditakaesgipvialedaidapd 93 
                   ++g+ + +l +Pff++++kg++  a+++   +v+v+l+  g++  ++  +id   a ++d +i+  +dt+   +++++   +gi v+a++ a+d + 
    EHU00305.1  28 SIGVTVGDLANPFFVQITKGAEMKARQLagdNVKVTLVSSGYDLGQQvGQIDNFIAAKVDMIILNAADTKgiAPAVKRARDAGIVVVAVDVAADGA- 123
                   7999******************99999854468889999998876667*********************986788888888899999999998888. PP

                   TS-EEEE-HHHHHHHHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSS...SHHHHHHHHHHHHTT-TT-SEEE- CS
  Peripla_BP_1  94 gvPcvipddtqageestqkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsn...diedaaealnelleshPeidaiva 186
                      ++  d+tqage + ++   +   ++ +++++gp   +++++rv+G + al+ +     +  + +  n   ++e++ e ++ ll+ +P ida+ a
    EHU00305.1 124 -NATITSDNTQAGEMACKYIADRLKDKGnVVIINGPP-VSAVQNRVEGCMTALKRH---PDIKLLSSNQNakgSREGGLEVMTGLLSANPKIDAVFA 215
                   .557889*********************888888775.56899*************...245555555553336789999***************** PP

                   SSHHHHHHHHHHHHHTT. CS
  Peripla_BP_1 187 indeaalGavlalkkeGr 204
                   ind +a+Ga la+k++ r
    EHU00305.1 216 INDPTAIGADLAAKQAQR 233
                   ***********9998776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.43
                   EEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS-EEEE-HHHHH CS
  Peripla_BP_1  59 gliiatsdtsfdditakaes.gipvialedaidapdgvPcvipddtqag 106
                    l  at++++   + aka + g  ++  + a d+p+ +P+ + d++++g
    EHU00305.1 256 SLFAATPAQDPQVMAAKAVEiGYDILQGKPAPDKPVLIPVKLIDRNNVG 304
                   5666788888444555566689999999999999999999999988877 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15   6.5e+02     122     146 ..     124     148 ..      23     160 .. 0.68
   2 !   30.7   0.0   7.6e-11   3.4e-07      56     165 ..     193     302 ..     143     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
                   -EEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_3 122 lTtvrqpleelGraaaellldlleg 146
                     t+  +  + G+ a + ++d+l++
    EHU00305.1 124 NATITSDNTQAGEMACKYIADRLKD 148
                   3466666777777777777777744 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 7.6e-11
                   SHHHHH......HHHHHCC-S..EEEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--...SCC..CSSSS--..EEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_3  56 aaaaaraal.llqalklaalP..tAviaasDelAlgvlqalreaglrvPedlsvigfdds...ela..alssPpl..TtvrqpleelGraaaellld 142
                    +++++ +  ll      a+P  +Av+a +D +A+g+  a+++a+    +++ ++g+d+s   e+a  +  s  l   t +q+++ ++ +a+e+  d
    EHU00305.1 193 REGGLEVMTgLL-----SANPkiDAVFAINDPTAIGADLAAKQAQR---NEFFIVGVDGSpdgEEAlkRKNS--LfaATPAQDPQVMAAKAVEIGYD 279
                   333444443222.....1245227**********************...8*********9554333322222..2559******************* PP

                   HHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3 143 llegekappeqvllppelveReS 165
                    l+g++ap ++vl+p +l+ R  
    EHU00305.1 280 ILQGKPAPDKPVLIPVKLIDRNN 302
                   *********************75 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00035       1.5      45      77 ..     123     155 ..     105     165 .. 0.82
   2 ?    1.1   0.0      0.12   5.5e+02      38      69 ..     230     259 ..     212     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00035
    Toprim_2  45 kkvvlalDnDkaGrkaakrlaellreagvreki 77 
                 ++  +  Dn +aG+ a+k +a++l+++g  ++i
  EHU00305.1 123 ANATITSDNTQAGEMACKYIADRLKDKGNVVII 155
                 5567889*****************999944443 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
    Toprim_2  38 llerypekkvvlalDnDkaGrkaakrlaellr 69 
                 + +r+  +  ++ +D    G++a kr ++l+ 
  EHU00305.1 230 QAQRN--EFFIVGVDGSPDGEEALKRKNSLFA 259
                 33333..668888***********99888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2455.20
//
Query:       EHU00306.1  [L=326]
Description: permease component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-42  145.3  49.1      3e-42  144.6  49.1    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6  49.1   1.7e-46     3e-42       1     268 []      49     314 ..      49     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 144.6 bits;  conditional E-value: 1.7e-46
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   ++ln++++a+i + +A G+++v+ ++G+i+l++g++++  a+va+l +   +    l++++al++g+a+gl++g+lv++ +++++i+tl++ ++l+g
    EHU00306.1  49 NLLNITRQASINIVLAAGMTFVI-LTGGIDLSVGSMLGTTAVVALLTSLDPML-ASLTIPMALGAGLAMGLFNGILVAWAGLPPFIVTLGTYTALRG 143
                   589********************.************99999988887777555.******************************************* PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaG 194
                    ++ll +g t  ++ ++   ++       +++    + ++a++++++++++lrrt +G++++avg+n +aar+ Gi+v+ v l+++ +sg+l+gl G
    EHU00306.1 144 AAYLLANGTTVINADINF-EWIGNGYLGPVPW----LIVIAFAVIALCWFILRRTTLGVHIYAVGSNIQAARLTGIKVGLVLLFVYGMSGLLSGLGG 235
                   ***666666666664443.3333333333333....3499********************************************************* PP

  BPD_transp_2 195 allalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   ++ a +l s++ n g+g++++aiaav+lGg+      g++ gt+iGalii+++++ ++tl+g++  ++ v+ ga++i+++
    EHU00306.1 236 LMSASRLYSANGNLGMGYELDAIAAVILGGTsfvggiGTITGTLIGALIIATLNN-GMTLMGVSYFWQLVIKGAVIIIAV 314
                   *******************************************************.9******9*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2276.50
//
Query:       EHU00307.1  [L=504]
Description: ATP-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-56  188.4   0.2    2.8e-32  112.1   0.0    2.3  2  ABC_tran     ABC transporter
    3.8e-09   36.8   0.4       0.01   15.7   0.0    3.2  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.3e-05   23.7   2.0    8.2e-05   22.4   0.5    2.3  2  AAA_30       AAA domain
    0.00021   20.8   0.4     0.0045   16.4   0.2    2.6  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0005   20.0   1.3      0.019   14.8   0.1    3.0  3  RsgA_GTPase  RsgA GTPase
     0.0028   17.1   1.1      0.069   12.6   0.4    2.8  3  TniB         Bacterial TniB protein
     0.0031   17.2   0.2      0.012   15.4   0.1    2.0  2  AAA_29       P-loop containing region of AAA domain
     0.0059   16.2   0.0      0.017   14.8   0.0    1.7  1  AAA_27       AAA domain
      0.009   15.3   0.1       0.63    9.3   0.0    2.5  2  Zeta_toxin   Zeta toxin
  ------ inclusion threshold ------
      0.021   15.2   2.2       0.63   10.4   0.6    2.7  2  AAA_16       AAA ATPase domain
      0.022   15.0   2.4       0.33   11.2   1.2    3.0  2  AAA_22       AAA domain
       0.03   14.8   0.0      0.059   13.9   0.0    1.4  1  AAA_23       AAA domain
      0.033   14.2   0.4       0.97    9.4   0.1    2.4  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.039   12.9   0.6       0.42    9.5   0.0    2.6  3  AAA_10       AAA-like domain
      0.042   13.9   0.0       0.52   10.4   0.0    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
      0.045   14.2   4.3        4.4    7.7   2.9    3.3  2  AAA          ATPase family associated with various cellular a
      0.062   13.6   0.4         11    6.4   0.0    3.4  2  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.09   12.8   0.0       0.42   10.6   0.1    2.1  2  Dynamin_N    Dynamin family
       0.11   12.1   0.5       0.51    9.9   0.1    2.2  2  AAA_25       AAA domain
       0.14   12.0   0.4        1.4    8.8   0.0    2.4  2  APS_kinase   Adenylylsulphate kinase
       0.16   12.5   0.2        6.6    7.3   0.1    2.9  2  AAA_18       AAA domain
       0.32   11.2   2.4        3.5    7.8   2.4    2.8  1  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   3.5e-35   2.8e-32       1     137 []      22     171 ..      22     171 .. 0.97
   2 !   74.5   0.0   1.4e-23   1.2e-20       2     136 ..     272     425 ..     271     426 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 3.5e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 lk v+l++++ge++a++GenGaGKStL+k+lag ++ t+Ge+l++g++    +++  l + i  + qe +l p+ltv+en                ++ 
  EHU00307.1  22 LKGVDLTVYPGELHALMGENGAGKSTLMKILAGAHTATSGEVLINGEPYPLkRPKAALAAGITLIYQEINLAPNLTVAENiflgseitragmvrrhQMA 120
                 789******************************************99877658999***************************************9999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +e+++++++lg +  ++++v    s LS  ++q v++aral +++++l++DEpta
  EHU00307.1 121 REAQQVINHLGAQFSATDKV----SRLSIAEQQQVEIARALHRNSRILVMDEPTA 171
                 99*****************9....*****************************97 PP

  == domain 2  score: 74.5 bits;  conditional E-value: 1.4e-23
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 +  sl++++ge+v++ G  GaG S L++l+ g ++ ++Gei++dg++++   ++e   + ig+l+++   + lf e+ ++en                 
  EHU00307.1 272 QPCSLNVRAGEIVGLAGLVGAGRSELAQLIFGVHRLQQGEIWVDGQKVEIhSPREAIAHGIGFLTENrkeQGLFLEMAAQENivmatlerdaqygmlnr 370
                 5679*****************************************9999889**************999899***************988877777554 PP

                 HHHTC....HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdee....iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     +    +++a++ l++   ++  v  ++  LSgG +q++ + r ++  p++l+lDEpt
  EHU00307.1 371 R---QarkiASEAIAVLNIRV-PHALV--RAGGLSGGNQQKLLISRWIAIGPRILILDEPT 425
                 2...12233555555555444.66666..67*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05      0.01       2      24 ..      35      57 ..      34     112 .. 0.78
   2 ?    5.5   0.0     0.015        13     253     297 ..     159     200 ..     148     204 .. 0.88
   3 !   12.3   0.0   0.00014      0.11     206     295 ..     382     453 ..     303     454 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l G Ng+GKS+L+++l +++ 
  EHU00307.1 35 HALMGENGAGKSTLMKILAGAHT 57
                5799**************98854 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
      AAA_21 253 ralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 r     ++l+ DEp + L  + ++ l+ l+k+l++ g  +i  +H
  EHU00307.1 159 RNS---RILVMDEPTAALSSRETEQLFALIKRLRSQGMAIIYISH 200
                 333...9****************************9999999999 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00014
      AAA_21 206 eeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                  +l+ +v ++                + a  lS G ++   l++  ++  +  ++l++DEp  g +  + +++++++ + +r g+ +++ 
  EHU00307.1 382 AVLNIRVPHA---------------LVRAGGLSGGNQQK-LLISRWIAIGP--RILILDEPTRGVDVGAKSEIYRMMQDMARQGVAILMI 453
                 5555555554...............46688999999999.44444444444..************************9888889988876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.5     1e-07   8.2e-05      19     122 ..      33     198 ..      25     202 .. 0.75
   2 ?   -1.2   0.0       1.7   1.4e+03      20      63 ..     283     333 ..     277     387 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-07
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g.........................grviglAptgkaAkv..La............eelgieastiakll 77 
                  +++l G  G+GK+t++k l+ a++a  g                         ++ i lAp+ ++A++  L+            +     a+      
  EHU00307.1  33 ELHALMGENGAGKSTLMKILAGAHTATsGevlingepyplkrpkaalaagitliYQEINLAPNLTVAENifLGseitragmvrrhQ----MAR------ 121
                 58899*********************977*************************999************44443333222222220....222...... PP

      AAA_30  78 krlk...............................grarlepg.tllivDEagmv....dtkqlaallkaaekagakvilv 122
                    +                               +r +l+++ ++l+ DE   +     t+ql al+k+++++g+ +i +
  EHU00307.1 122 ---EaqqvinhlgaqfsatdkvsrlsiaeqqqveiAR-ALHRNsRILVMDEPTAAlssrETEQLFALIKRLRSQGMAIIYI 198
                 ...1234444444666788888888888889999754.445555*******887776667888888888888889988865 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLa 63 
                 ++ l G  G+G + + + +  +++ + g      ++v + +p ++ A+ ++
  EHU00307.1 283 IVGLAGLVGAGRSELAQLIFGVHRLQqGeiwvdgQKVEIHSPREAIAHGIG 333
                 566778888888888888877777764577777777777777777777665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   5.5e-06    0.0045      25     208 ..      33     211 ..      17     221 .. 0.72
   2 ?   -1.5   0.0       1.8   1.4e+03     131     184 ..     392     441 ..     283     473 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.5e-06
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--....BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSE.EEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk....skekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkge.seykingke 117
                 ++ a++G+NG+GKs l+  +    G  ++    +++ + li+      k+ +++  a +++++++ + +   + +e++ +  ++ r g   ++++ ++ 
  EHU00307.1  33 ELHALMGENGAGKSTLMKIL---AGA-HT----ATSGEVLINGepypLKRPKAALAAGITLIYQEINLApNLTVAENIFLGSEITRAGMvRRHQMAREA 123
                 46899***********9977...563.44....688899999888877888999999******999988444556678888888888873334443333 PP

                 E-H.HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCE CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtk.kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadkl 208
                  +  + +  +++ ++ + + LS  e++ v +a   A++  + + + ++De  aaL  ++++++  l+k+ +++ + +i is+r   + + +  
  EHU00307.1 124 QQViNHLGAQFSATD-KVSRLSIAEQQQVEIAR--ALH--RNSRILVMDEPTAALSSRETEQLFALIKRLRSQgMAIIYISHRMAEVYELSDR 211
                 333344444444433.45578888888777664..455..566799**********************9887758888999997655544443 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                 T-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 131 giskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                  +    LSgG+++ + ++  +Ai    p  + +lDe     D    +++ ++++
  EHU00307.1 392 LVRAGGLSGGNQQKLLISRWIAIG---P-RILILDEPTRGVDVGAKSEIYRMMQ 441
                 333335666655444444444442...2.2445566666666655555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.4e-05     0.019      99     130 ..      32      63 ..      26      67 .. 0.86
   2 ?   -1.6   0.0       2.7   2.2e+03      61      85 ..     177     201 ..     114     215 .. 0.69
   3 ?    2.3   0.0      0.17   1.4e+02      98     130 ..     280     312 ..     255     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
                  TSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgev 130
                  +++ +l+G+ G+GKStL++ l++ +++  gev
   EHU00307.1  32 GELHALMGENGAGKSTLMKILAGAHTATSGEV 63 
                  57889*****************9988777776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
                  HHHHHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  61 eeeeleelkeelealgyevllvsak 85 
                  e+e+l +l ++l++ g++++++s +
   EHU00307.1 177 ETEQLFALIKRLRSQGMAIIYISHR 201
                  2235566666777777777776655 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.17
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgev 130
                  +++++ l+G  G+G+S L   + + ++l+ ge+
   EHU00307.1 280 AGEIVGLAGLVGAGRSELAQLIFGVHRLQQGEI 312
                  458999**************9999888888887 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.45   3.7e+02      39      62 ..      36      59 ..      26      72 .. 0.85
   2 !   12.6   0.4   8.4e-05     0.069      87     151 ..     123     190 ..     107     203 .. 0.80
   3 ?   -0.1   0.0      0.66   5.4e+02     116     129 ..     412     425 ..     399     453 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.45
        TniB 39 llvGdsnnGKtmivekFarlhppe 62
                 l+G+   GK+++++  a  h+++
  EHU00307.1 36 ALMGENGAGKSTLMKILAGAHTAT 59
                689**********99888888766 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.4e-05
        TniB  87 yaaiLealgaplkararvskl...eqqvlrllrel..kvrvLiiDEihnllagsarkqreflnalksLgn 151
                  ++++++lga+++a+++vs+l   eqq +++ r+l  + r+L++DE   +l  s+r+ +++++++k+L  
  EHU00307.1 123 AQQVINHLGAQFSATDKVSRLsiaEQQQVEIARALhrNSRILVMDEPTAAL--SSRETEQLFALIKRLRS 190
                 5789999*****999977754223788889998873358********9999..8889999******9975 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.66
        TniB 116 relkvrvLiiDEih 129
                  ++++r+Li+DE  
  EHU00307.1 412 IAIGPRILILDEPT 425
                 57899******965 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.4e-05     0.012      13      39 ..      23      49 ..      17      59 .. 0.81
   2 ?   -3.1   0.0       8.7   7.1e+03      24      36 ..     283     295 ..     274     297 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                +g ++++ + + + l+G++G+GKSTl+
  EHU00307.1 23 KGVDLTVYPGELHALMGENGAGKSTLM 49
                55667777777999************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.7
      AAA_29  24 atlltGpsGsGKS 36 
                 ++ l+G  G+G S
  EHU00307.1 283 IVGLAGLVGAGRS 295
                 6778999999999 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05     0.017       9      44 ..      14      50 ..       9      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
      AAA_27  9 eryGkftd.rsldfsaeeadlhliyGpNEAGKstalr 44
                +r+G+f   + +d+     +lh ++G N AGKst+++
  EHU00307.1 14 RRFGHFYAlKGVDLTVYPGELHALMGENGAGKSTLMK 50
                599**97625799*999*****************997 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00077      0.63      21      52 ..      37      68 ..      33      79 .. 0.86
   2 ?    3.2   0.0     0.056        46      18      47 ..     283     312 ..     272     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00077
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvvrldpD 52
                l G  GAGKs+l++ l+ +++++++ v +++ 
  EHU00307.1 37 LMGENGAGKSTLMKILAGAHTATSGEVLINGE 68
                6799*****************99999998876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.056
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvv 47 
                 ++ l+G  GAG sela+l+   ++ q++ +
  EHU00307.1 283 IVGLAGLVGAGRSELAQLIFGVHRLQQGEI 312
                 5679*************9988887555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00077      0.63      27     161 ..      35     188 ..      27     198 .. 0.47
   2 ?    3.4   0.0      0.11        89      20     128 ..     279     393 ..     269     450 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00077
      AAA_16  27 vllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde..............aesaeleawrekleeala.... 106
                   l Ge G GKs+l++ l+ a +++ g + ++g+   l  ++p +ala  +   +l+ q+ +               +               ++    
  EHU00307.1  35 HALMGENGAGKSTLMKILAGAHTATSGEVlINGEPYPL--KRPKAALAAGI---TLIYQEINLapnltvaeniflgsE---------------ITragm 113
                 5699***********99997777664444477777777..45556677777...455555555233332222222220...............222334 PP

      AAA_16 107 ...................avpelagaea......srllellkrllallsrderp.lvlvlDdlq..wadeaslqllaaLlrl 161
                                    +               srl  + ++ ++ ++  +r   +lv+D+        ++ ql+a++ rl
  EHU00307.1 114 vrrhqmareaqqvinhlgaQ--------FsatdkvSRLSIAEQQQVEIARALHRNsRILVMDEPTaaLSSRETEQLFALIKRL 188
                 43333333333333332221........0222334333333333332222222222566666544223333444444444444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellr..alekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.......... 106
                 r+g  e+v l G  G G s l++ ++   +l++ ++++  g+ ++     p+ a+a  + +  l +  +++    ++ + +++   ++a          
  EHU00307.1 279 RAG--EIVGLAGLVGAGRSELAQLIFGvhRLQQGEIWV-DGQKVEI--HSPREAIAHGIGF--LTENRKEQ---GLFLEMAAQENIVMAtlerdaqygm 367
                 555..799999*************99532444443333.3333333..2444444444422..11111111...1111111111111111223333444 PP

      AAA_16 107 ....avpelagaeasrllellkrlla 128
                     +++++a+++   l+  + ++l+
  EHU00307.1 368 lnrrQARKIASEAIAVLNIRVPHALV 393
                 44443344444444444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   0.00041      0.33       9     101 ..      36     170 ..      31     204 .. 0.46
   2 ?   -1.0   0.0       2.5     2e+03      10      26 ..     286     302 ..     279     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00041
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee...................erpevvfvtlpsstsskdllrellralglelka.................. 70 
                 +++Ge G+GK+tl++ l+  +++                         +   ++ ++  ++    +++++++   +  + +                  
  EHU00307.1  36 ALMGENGAGKSTLMKILAGAHTAT----SgevlingepyplkrpkaalAAGITLIYQEINLAPNLTVAENIFLGSEITRAGmvrrhqmareaqqvinhl 130
                 799**************9998532....23356766555554444443111222223333333333333333333333333444444444444444444 PP

      AAA_22  71 ..........erlsseell.ealeqalraravielliiDEaq 101
                           +rls  e     +++al++    ++l+ DE  
  EHU00307.1 131 gaqfsatdkvSRLSIAEQQqVEIARALHRN--SRILVMDEPT 170
                 444442222222222222222222222222..3355555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.5
      AAA_22  10 vtGesGtGKTtllrrll 26 
                 + G +G+G++ l++ ++
  EHU00307.1 286 LAGLVGAGRSELAQLIF 302
                 67999******999765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.3e-05     0.059      21      42 ..      34      55 ..      14      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-05
      AAA_23 21 ltlItGpNGaGKTTildAikla 42
                l ++ G+NGaGK+T++  +  a
  EHU00307.1 34 LHALMGENGAGKSTLMKILAGA 55
                77899***********988766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1    0.0012      0.97      18      43 ..      24      56 ..       7      64 .. 0.67
   2 ?    2.2   0.0       0.2   1.6e+02      19      40 ..     281     302 ..     266     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
                H.......TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 18 l.......gdvilLeGdLGaGKTtlvrglakal 43
                        g++ +L G+ GaGK+tl++ la a 
  EHU00307.1 24 GvdltvypGELHALMGENGAGKSTLMKILAGAH 56
                1343344456699**************998765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.2
                 TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrgla 40 
                 g+++ L G +GaG + l++ + 
  EHU00307.1 281 GEIVGLAGLVGAGRSELAQLIF 302
                 77899************99875 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00052      0.42       9      54 ..      20      65 ..      16      92 .. 0.85
   2 ?   -1.4   0.1         1   8.2e+02     241     282 ..     161     201 ..     116     216 .. 0.54
   3 ?   -0.1   0.0      0.44   3.5e+02      26      61 ..     286     321 ..     278     382 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00052
      AAA_10  9 lanqevkgsktnasasliiGdlGnGKSvlakllvlyisllggkali 54
                +a ++v+ +++     +++G+ G+GKS l+k+l    ++  g +li
  EHU00307.1 20 YALKGVDLTVYPGELHALMGENGAGKSTLMKILAGAHTATSGEVLI 65
                66677777777777789***************99888888877776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
      AAA_10 241 fkvvifDEawiftssaeGkkllkelvRiGRsynaavylvtqs 282
                  ++ ++DE  +  ss e ++l   ++R  Rs   a++ +++ 
  EHU00307.1 161 SRILVMDEPTAALSSRETEQLFALIKRL-RSQGMAIIYISHR 201
                 3444455555555555555544444443.3333333333333 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.44
      AAA_10  26 iiGdlGnGKSvlakllvlyisllggkaliiDpkker 61 
                 + G +G+G+S la+l++   +l +g + +   k e 
  EHU00307.1 286 LAGLVGAGRSELAQLIFGVHRLQQGEIWVDGQKVEI 321
                 578899999999999999999988776543344443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00063      0.52       3      25 ..      36      58 ..      35      91 .. 0.88
   2 ?   -0.0   0.0       1.1     9e+02       2      21 ..     284     303 ..     283     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00063
                EEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltgekai 25
                a++G   +GKStL++ l g++  
  EHU00307.1 36 ALMGENGAGKSTLMKILAGAHTA 58
                799**************998433 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 v+++G   +G S L + ++g
  EHU00307.1 284 VGLAGLVGAGRSELAQLIFG 303
                 899**********9988876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.9    0.0055       4.4       3     115 ..      37     205 ..      35     217 .. 0.52
   2 ?    0.2   0.0       1.2   9.5e+02      15      69 ..     373     426 ..     371     491 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0055
                 EESSTTSSHHHHHHHHHHHHTHE.............................................EEEEETTTCSSS................... CS
         AAA   3 lyGppGtGKTllakavakelgve.............................................fleisgsellsk................... 37 
                 l+G  G GK++l+k +a    ++                                                        +                   
  EHU00307.1  37 LMGENGAGKSTLMKILAGAHTATsgevlingepyplkrpkaalaagitliyqeinlapnltvaeniflG----------Seitragmvrrhqmareaqq 125
                 788889999999999888843222333333333334444444444444443333344433333333330..........03333333333344444444 PP

                 ................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  38 ................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                                  ++ +e++  e+ +++ +++   il++DE  a  +sr            +qL++ +++++++   + +i +++r+ ++
  EHU00307.1 126 vinhlgaqfsatdkvsRLSIAEQQQVEIARALHRNS--RILVMDEPTAALSSR----------ETEQLFALIKRLRSQ--GMAIIYISHRMAEV 205
                 444444433333333333444444445554444444..788888888888877..........567888888888873..47778787777665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                 HHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGG CS
         AAA  15 akavakelgvefleisgsellskyvgesekkirelfkeakeka.kpsilfiDEida 69 
                 a+ +a+e+ + +l+i ++  l    g s  + ++l+ + +  a +p il++DE  +
  EHU00307.1 373 ARKIASEA-IAVLNIRVPHALVRAGGLSGGNQQKLLIS-RWIAiGPRILILDEPTR 426
                 56666663.66788888887766666666666666644.44445689999999433 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.013        11      53      89 ..     150     186 ..     116     187 .. 0.84
   2 ?    2.8   0.1      0.17   1.4e+02      63      77 ..     415     429 ..     388     442 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
     SbcCD_C  53 lyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +++ a++ +++ r++++DE  + l+++ +++l++l++
  EHU00307.1 150 QVEIARALHRNSRILVMDEPTAALSSRETEQLFALIK 186
                 444444456778*********************9986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.17
     SbcCD_C  63 alrlvfLDEAFsklD 77 
                  +r+++LDE   ++D
  EHU00307.1 415 GPRILILDEPTRGVD 429
                 456666666666666 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00052      0.42       2      41 ..      36     115 ..      36     201 .. 0.70
   2 ?   -1.7   0.0       3.3   2.7e+03       3      53 ..     286     340 ..     284     391 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00052
                 EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE........................................C CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql........................................g 41 
                 a++G+  +GKS+++  L g++   +g+ ++   p  l+                                         +
  EHU00307.1  36 ALMGENGAGKSTLMKILAGAHTATSGEVLINGEPYPLKRpkaalaagitliyqeinlapnltvaeniflgseitragmvR 115
                 578999*************************9999999966666666666666666666666666666655555554441 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
                 EEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C.......CS...S CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas.......eravke 53 
                 + G + +G S ++  + g + l  g++ +    +e++  +e  a+       +   ++
  EHU00307.1 286 LAGLVGAGRSELAQLIFGVHRLQQGEIWVDGQKVEIHSPREAIAHgigflteN---RK 340
                 56777889999999999999999999988888888888888777754442221...22 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00063      0.51      32      61 ..      31      62 ..      24      79 .. 0.73
   2 ?   -1.4   0.1       1.7   1.4e+03     112     131 ..     160     179 ..     101     200 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00063
      AAA_25 32 agelallaGapgtGKttlaldlalava..tGk 61
                 gel++l+G  g+GK+tl   la a +  +G+
  EHU00307.1 31 PGELHALMGENGAGKSTLMKILAGAHTatSGE 62
                599**************986666444334444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
      AAA_25 112 eslpLfakdrggtlltadvd 131
                  s+ L++++   +l  ++++
  EHU00307.1 160 NSRILVMDEPTAALSSRETE 179
                 23333333333333333333 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.69   5.6e+02       7      23 ..      37      53 ..      33      65 .. 0.83
   2 ?    8.8   0.0    0.0017       1.4       3      64 ..     282     347 ..     280     393 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.69
                EESSTTSSHHHHHHHHH CS
  APS_kinase  7 ltGlsgsGKstianale 23
                l G  g+GKst+ + l+
  EHU00307.1 37 LMGENGAGKSTLMKILA 53
                67999******998876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0017
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH.....TTTTTTT--SSHHHHHHHHHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnv.....RhgLnkdLgfseedRkenirrva 64 
                  +v l+Gl g+G+s +a+ +   +++ ++  + +dG++v     R+ + +++gf +e+Rke+   + 
  EHU00307.1 282 EIVGLAGLVGAGRSELAQLIF-GVHRLQQGEIWVDGQKVeihspREAIAHGIGFLTENRKEQGLFLE 347
                 57889************9886.566666777888999987777788999**********99866554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0081       6.6       3      38 ..      37      70 ..      36     183 .. 0.86
   2 ?    2.3   0.0      0.29   2.4e+02       1      18 [.     284     301 ..     284     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0081
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakengll 38
                l+G  G+GK+tl k L+  +     +++v+ +++++
  EHU00307.1 37 LMGENGAGKSTLMKILAGAH--TATSGEVLINGEPY 70
                78899***********8776..56666666555555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.29
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 ++l+G  G+G ++la+ +
  EHU00307.1 284 VGLAGLVGAGRSELAQLI 301
                 689************987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.4    0.0043       3.5       3      43 ..      36     125 ..      34     199 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0043
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdt.............................................lrr.rlfgtdqq 43 
                  l G +G+GKstl + l+ +++   +++l   +                                             +rr +++ + qq
  EHU00307.1  36 ALMGENGAGKSTLMKILAGAHTatsGEVLINGEpyplkrpkaalaagitliyqeinlapnltvaeniflgseitragmVRRhQMAREAQQ 125
                 67899************9999976744432222245555555555555555555555555555555555555555554222233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3578.95
//
Query:       EHU00308.1  [L=866]
Description: putative hybrid two-component system regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-23   80.9   0.0    1.6e-22   80.1   0.0    1.4  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    7.9e-12   45.3   0.0      2e-11   44.0   0.0    1.8  1  Response_reg  Response regulator receiver domain
    4.9e-10   39.6   0.1    4.9e-10   39.6   0.1    2.6  2  HAMP          HAMP domain
    7.5e-10   39.0   0.2    2.6e-06   27.6   0.0    3.5  3  PAS_7         PAS fold
    5.2e-06   26.4   0.1    5.2e-06   26.4   0.1    2.9  3  HisKA         His Kinase A (phospho-acceptor) domain
      0.006   16.4   0.0      0.011   15.6   0.0    1.4  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
  ------ inclusion threshold ------
      0.058   13.3   1.1       0.16   11.9   1.1    1.7  1  JAKMIP_CC3    JAKMIP CC3 domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   6.2e-26   1.6e-22       2     110 ..     595     709 ..     594     711 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 6.2e-26
                 HHHHHHHHHHHHHHHHHHH.HSTTTEEEEEEEE...EE.....TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTE CS
   HATPase_c   2 dekrLrqiisnlvdNavkf.atkageieveika...se.....ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGe 91 
                 d ++L+ +++nlv Na ++ a+++gei+++i     +e     d+++i+v D G+G+++e + ++fe+f +   tk++g g+GlGls+v  +v++ gG+
  EHU00308.1 595 DASQLENAVINLVVNARDAmAGQSGEIRLRIWNqrrTErgekrDRVTIEVIDHGCGMSEEVRAQVFEPFFT---TKTTGTGSGLGLSMVYGFVRQSGGQ 690
                 678999*************5559999999999765511556789***************************...9999****************9**** PP

                 EEEEEETTTEEEEEEEEES CS
   HATPase_c  92 iwvesepgrGttftftlpl 110
                 +++e+ pg+Gtt+++ lp 
  EHU00308.1 691 VELETAPGQGTTVRLLLPR 709
                 ***************9986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.8e-15     2e-11       1     111 [.     734     842 ..     734     843 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 7.8e-15
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSS.SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpg.mdGlellkeireedpelpviiltahseeedavealkagad 95 
                   vl+ dD+p+vr+ l + l +  y  + e+++g++al+l ++   +dl++ D+++pg ++G e++++ +++ p+l  +++++++    +++ + +   
    EHU00308.1 734 VLVLDDEPAVRQTLCEHLHQLCY-LTLECDTGEAALALQHQTPdIDLLISDLMLPGeINGAEVIRQAQQKWPQLATLLISGQD---LRHQPVTLPLC 826
                   89*********************.999**********9866555************99**********************766...79999****** PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   + l+Kp++ ++L++al
    EHU00308.1 827 ERLAKPWQAAQLVQAL 842
                   *************997 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   1.9e-13   4.9e-10       2      50 ..     312     361 ..     311     363 .. 0.93
   2 ?   -2.7   0.7       3.1   7.9e+03       8      27 ..     525     542 ..     522     549 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.9e-13
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldr 50 
                 + r++  +L  +a+a+ r+a+G+ ++++p   +rDE+GeLarafN+++++
  EHU00308.1 312 IYRNLGSSLTAIAAAMTRLAQGEHNVSVPGlQRRDELGELARAFNVFARN 361
                 56788889999************************************987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHTTTBTSS CS
        HAMP   8 rPLrrLaraarriaaGdldt 27 
                  +++r ++aa+r a   l++
  EHU00308.1 525 SRIERARQAADRAA--LLTQ 542
                 68999999999987..4555 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     1e-09   2.6e-06       4      47 ..     386     429 ..     383     439 .. 0.93
   2 !    7.5   0.0    0.0017       4.4      74     111 ..     437     474 ..     429     478 .. 0.83
   3 ?   -1.8   0.0       1.4   3.5e+03      14      24 ..     620     630 ..     616     632 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1e-09
       PAS_7   4 msqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellry 47 
                 m++G+++fD++++Lv+wN++y +ll++ ++ +q g +++ ll+ 
  EHU00308.1 386 MRDGFALFDNSGELVVWNDQYPQLLGIAPRDLQRGLHYQHLLAQ 429
                 99***********************************9999875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
       PAS_7  74 kphsfererpdgrvievrgnplpdgGfVttytDiTerr 111
                  ++  e++ +dgr++e+r +p+p +G V t  + T r+
  EHU00308.1 437 LAEPQEVRLADGRTVELRFSPVPRRGSVNTVLERTSRK 474
                 566789999*******************9987777665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.4
       PAS_7  14 dlrLvawNrry 24 
                 + rL++wN+r 
  EHU00308.1 620 EIRLRIWNQRR 630
                 569******95 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       5.6   1.4e+04      41      62 ..     146     167 ..     132     171 .. 0.51
   2 ?   -3.4   0.1       4.1   1.1e+04      32      49 ..     260     277 ..     237     288 .. 0.69
   3 !   26.4   0.1     2e-09   5.2e-06       3      65 ..     490     551 ..     488     553 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHHHHHHHHHHHC CS
       HisKA  41 letiesearrldhlvedlLdls 62 
                  + + s+  + + l+e++ dl+
  EHU00308.1 146 RNLVLSGLWQSQLLLERINDLA 167
                 4444444555555555555555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.1
                 T-HSSCHHHHHHHHHHHH CS
       HisKA  32 klteelkeyletiesear 49 
                 +l+++  +y++++ ++++
  EHU00308.1 260 ALNDDITAYVQRVARQSD 277
                 345566667777766665 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 2e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 g+++ g+aH++++ L++i+g + + + +   +  l+  +e++++ a+r   l ++lL +sr +
  EHU00308.1 490 GQLTGGIAHDFNNLLAVIIGSLALTEGQ-LPPGPLASRIERARQAADRAALLTQRLLAFSRKQ 551
                 899*********************9775.55689999************************87 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.2e-06     0.011       3      63 ..     599     669 ..     596     695 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.2e-06
  HATPase_c_3   3 lekAlaelvdNsldAdaen...vkievnknrgkt.......geivieDdGkGmseeelknalrlatsskea 63 
                  le A++ lv N+ dA a +   + + + ++r  +        +i + D G Gmsee   +++++  ++k++
   EHU00308.1 599 LENAVINLVVNARDAMAGQsgeIRLRIWNQRRTErgekrdrVTIEVIDHGCGMSEEVRAQVFEPFFTTKTT 669
                  489************9998877666655444222355566689999********99888899888877775 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.1   6.1e-05      0.16      65     142 ..      77     146 ..      51     191 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.1e-05
  JAKMIP_CC3  65 eqvaeeeselrfrqLlaeyqalqrayalLreklggeldaerelkareqleselrktkskikdLeeaLaqkGqdskwve 142
                 + v + e +   r+L ++ qalq  +alL ++  + +++er+++ r +    l   +s      + L +kG++ + + 
  EHU00308.1  77 QVVGALEYQSESRRLQQNQQALQHSLALLASTPLAAREPERVARLRAR---SLMLEQSV-----SLLLRKGHERHLQR 146
                 56666677778899****************************998873...33333333.....34555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5783.94
//
Query:       EHU00309.1  [L=294]
Description: permease component of an ABC superfamily phosphonate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-08   32.0   6.2    9.2e-08   32.0   6.2    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   8.0      0.23   4.1e+03     102     162 ..      26     101 ..      20     114 .. 0.62
   2 !   32.0   6.2   5.1e-12   9.2e-08       2     182 ..     105     278 ..     104     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.23
  BPD_transp_1 102 vlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...............nggvlalv 162
                   + ++a+  ++  l ++f +++ g  +  +l++ + lg+ +l+   ++d+ ++                ++g+l+++
    EHU00309.1  26 LRRLAMLALALVLYYVFFFMVFGIEWNRLLTGCQQLGRYFLRMFVWQDFVNWPfgyyfsqvgitlaivFAGTLTAT 101
                   5577777777777777777777777777788777788888888888888877766666664444222222222222 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 5.1e-12
  BPD_transp_1   2 illGilaa.....lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGas 93 
                   ++l++laa      +  +++  ++r+l+++l+++ + ++++++v       ++g + l+++++++l+ +++   +++++ ++++++  +   alGa+
    EHU00309.1 105 LPLSFLAArnvmhDKIARPIAFVVRRLFDMLRGIDMAIWGLIFV------RAVGMGPLAGVLAIILQDIGLLGKLYSEGHEAVERSPSRGLGALGAN 195
                   67777777543222333445556777777777888888999999......*********************************************** PP

  BPD_transp_1  94 rwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                     q  r  ++ +++p ++++ ++++ ++   a++l f+g++   g  l+ a++++  ++     v +l+i++++++ v+d++   l +r
    EHU00309.1 196 SLQKHRFGIFTQSFPQFLALSLYQIESNTRSAAVLGFVGAG---GVGLVYAENMRLWNWDV---VMFLTIILVVVVMVMDAISSRLRKR 278
                   ***************************************55...44477788888888666...7777777777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2076.25
//
Query:       EHU00310.1  [L=284]
Description: permease component of an ABC superfamily phosphonate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-16   60.7   7.7    1.5e-16   60.7   7.7    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.088   13.4   2.8       0.22   12.1   0.8    2.5  3  YuiB          Putative membrane protein
       0.53   10.2   0.1       0.53   10.2   0.1    2.7  3  SLATT_1       SMODS and SLOG-associating 2TM effector domain 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.1     0.018   1.1e+02      22      63 ..      40     113 ..      25     117 .. 0.66
   2 !   60.7   7.7   2.5e-20   1.5e-16       3     177 ..     111     279 ..     109     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.018
  BPD_transp_1  22 pliivllslPsfv.....laillvlvf...........................vilsilghlilpviilllls 63 
                   +l+ +++slP+f      ++++l l +                            ++ +l ++ ++v+i+++l 
    EHU00310.1  40 NLVTIWQSLPHFFdylheIMPVLHLPVlfadgktegslaywgyrlniqlpliweTLQLALASTLIAVVIVGVLA 113
                   67888999999999999977776655566678888888888888888777544444444444444444444443 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 2.5e-20
  BPD_transp_1   3 llGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   +l+++aa  ++    l+ ++r ++ +l+++P +++a+++v       ++g +++p++++l+l++++  + ++++a++s ++  v+   a+Gas+ q+
    EHU00310.1 111 VLAFFAAdnTQTPASLRMAIRAFVAFLRTMPELAWAVMFV------MAFGIGAIPGFLALALHTIGSLTKLFYEAIESASDKPVRGLAACGASKLQR 201
                   6899999999999***************************......99************************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                   +r+   P+++p++++  ++++  ++  +++l ++g++ G+g+ l++ i    +++ s  ++l ++i+v ll +v+  l r
    EHU00310.1 202 MRYAFWPQVKPVFLSYSFMRLEVNFRSSTILGLVGAG-GIGQELMTNIKLDRFDQVS-MTLLLILIVVSLLDTVSGRLRR 279
                   ***********************************76.6***************999.8888888888888888776665 PP

>> YuiB  Putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.34     2e+03      58      89 ..       4      35 ..       1      40 [. 0.83
   2 ?   12.1   0.8   3.6e-05      0.22      20      84 ..      95     158 ..      90     172 .. 0.89
   3 ?   -2.3   0.1       1.2     7e+03      30      37 ..     258     265 ..     220     274 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.34
        YuiB 58 faslleklvelalvDililvsgliGaivaGvv 89
                f++ ++++   +  D l+ +  l+G ++a   
  EHU00310.1  4 FERYYQRIRRQQKRDSLVWSLVLVGLYLAAAN 35
                7778899999999999999999**99998765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.6e-05
        YuiB  20 lnmllrttWilaviypivvllivdkvklleyltepkeafaslleklvelalvDililvsgliGai 84 
                 l + l +t i +vi+++++++  d++++ + l+ + +af ++l+++ ela + +++++ g+ Gai
  EHU00310.1  95 LQLALASTLIAVVIVGVLAFFAADNTQTPASLRMAIRAFVAFLRTMPELAWAVMFVMAFGI-GAI 158
                 56778999********************************************999999884.665 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.2
        YuiB  30 laviypiv 37 
                 +++++ ++
  EHU00310.1 258 MTLLLILI 265
                 33333333 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   8.8e-05      0.53      10      52 ..       5      47 ..       1      58 [. 0.88
   2 ?    0.8   1.9     0.073   4.3e+02      31      70 ..      98     138 ..      90     144 .. 0.67
   3 ?    0.5   0.6     0.091   5.4e+02      36      72 ..     129     165 ..     115     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.8e-05
     SLATT_1 10 ldwYrkkaeeneraakrwrlllillellalllaalrafgelsv 52
                 ++Y++  ++++r + +w+l+l+ l l+a+ +a ++ ++ ++ 
  EHU00310.1  5 ERYYQRIRRQQKRDSLVWSLVLVGLYLAAANMAEFNLVTIWQS 47
                579******************************9998888876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.073
     SLATT_1  31 lillellalllaalrafgelsv.dlvgvlaavaaallaWle 70 
                  ++ +l+a++++ + af +++  +  + l +++ a++a+l 
  EHU00310.1  98 ALASTLIAVVIVGVLAFFAADNtQTPASLRMAIRAFVAFLR 138
                 44566777777766655545444778888888888888875 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.091
     SLATT_1  36 llalllaalrafgelsvdlvgvlaavaaallaWlelk 72 
                 ++ +++a lr+++el ++++ v+a  ++a+  +l+l 
  EHU00310.1 129 AIRAFVAFLRTMPELAWAVMFVMAFGIGAIPGFLALA 165
                 5667889999999999988888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2183.55
//
Query:       EHU00311.1  [L=309]
Description: substrate-binding component of an ABC superfamily phosphonate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-49  166.9   0.0    6.8e-49  166.7   0.0    1.0  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
    0.00047   20.2   0.0     0.0009   19.2   0.0    1.4  1  NMT1             NMT1/THI5 like
     0.0024   17.3   0.0     0.0048   16.3   0.0    1.6  1  SBP_bac_3        Bacterial extracellular solute-binding prote
  ------ inclusion threshold ------
      0.099   12.0   0.0       0.18   11.2   0.0    1.4  1  Rhamnogal_lyase  Rhamnogalacturonate lyase family


Domain annotation for each model (and alignments):
>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.0   1.5e-52   6.8e-49       2     227 ..      30     275 ..      29     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 1.5e-52
                     EE--SS-HHHHHHHHHHHHHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE.--HHHHHHHHHHS..-EEEEEEEEE.TT--SEEEEEEEEE CS
  Phosphonate-bd   2 gvlPsespaelkeayqpladyLseelGvevelvvatdyaavvealragqvDiaf.lgplayvqardqa..gveplatrvr.sdGsasyrsviivr 92 
                     g+l  +++ +   + q++  ++ +el v+ +++  +dy++v+++l  g+vD+++ ++p++y+ +  q+  +v+++++ v+ +d s++y+sv+iv+
      EHU00311.1  30 GILGGQNATQQIGDNQCVKSFFDKELHVDTKIRNSSDYSGVIQGLLGGKVDLVLsMSPSSYASVYIQDpkAVDLVGIVVDdKDQSRGYHSVVIVK 124
                     5666677777777899999********************************99747899999976664327899999999777799********* PP

                     TTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HH....HHSSEE.EE--HHHHHHHHHTTSSSEEEEEHHHHHHHH.......... CS
  Phosphonate-bd  93 adsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpe....ddfsev.fsgshdaavlavlsgdadaaavsadaledlv.......... 172
                     ads++++ledLkgk++++++p+StsG+lvp + + k +g +++    ++fs+v fsg+h++ +l vl++++d a+++++ + d+           
      EHU00311.1 125 ADSPYKKLEDLKGKSFGMADPDSTSGFLVPNQAFKKLFGGNIDnkynNFFSSVtFSGGHEQDILGVLNNQFDGAVTWTSMVGDYNkgytsgafgr 219
                     **********************************777888777556679*****************************99999999999998888 PP

                     ...HH-HHHHTTEEEEEEEEEEE--EEEEETTS-HHHHHHHHHHHHH---SHHHHHHH CS
  Phosphonate-bd 173 ...aegpedkdelrviassppipndpvvvrkelseelkekiqdallslaeteegkkll 227
                         ++p+ ++++r+i++sp+ipn p++v+++l++++k+k+ +a+ +l++  ++++ +
      EHU00311.1 220 lirMDHPDLMKQIRIIWQSPLIPNGPILVSNKLPADFKAKVIAAIKKLDK--DDHACF 275
                     8887778899***************************************8..444444 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     2e-07    0.0009      15     100 ..      50     144 ..      47     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2e-07
                 HH.HHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHH..HHHHTT--EEEEEEEE-S-......-EEEEEECCC--SSGGGGTTSEEEE-S CS
        NMT1  15 YF.keeGldVeivepadpsdatelvasgkadfgvsyqesll..aarakglpvvsvaallqep......lsglivlkdsgikspkDLkGkrigyvg 100
                 +F ke ++d +i   +d s +++ +  gk+d+ +s ++s +  +  +    v  v+ +++ +       s +iv++ds+ k+++DLkGk  g+  
  EHU00311.1  50 FFdKELHVDTKIRNSSDYSGVIQGLLGGKVDLVLSMSPSSYasVYIQDPKAVDLVGIVVDDKdqsrgyHSVVIVKADSPYKKLEDLKGKSFGMAD 144
                 5623447888**********************9999999983334457788888888887762223335679********************976 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.1e-06    0.0048      33     168 ..      52     210 ..      50     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-06
                 HHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETT............SHGTCCHSSCGCGTTSEEE.EET CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxx.xxx RF
   SBP_bac_3  33 akrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkd............askissiksladLkgkkvg.vqa 117
                  k+l v++++++  +++++i++l  gkvD++    +++p   + v   +p  +  ++++v +kd            a  +s +k+l+dLkgk+ g +  
  EHU00311.1  52 DKELHVDTKIRNSsDYSGVIQGLLGGKVDLVL---SMSPSSYASVYIQDPKAVDLVGIVVDDKDqsrgyhsvvivkA--DSPYKKLEDLKGKSFGmADP 145
                 58999******988****************98...7899999******************976689********652..56788888******995566 PP

                 TSHHHHHHHHHHHC.....TSEE..........EEE.SSHHHHHHHHHTTSSSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxx.....xxxx..........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 118 gstaeellkeelkk.....gaei..........vef.dtleealqaLkngrvdavvadspvlaylvk 168
                 +st+  l+ +++ k     +  i          v+f   +e+ ++ + n++ d +v+  +++ ++ k
  EHU00311.1 146 DSTSGFLVPNQAFKklfggN--IdnkynnffssVTFsGGHEQDILGVLNNQFDGAVTWTSMVGDYNK 210
                 68887666665555566441..333333333334443445555666777777777776666666655 PP

>> Rhamnogal_lyase  Rhamnogalacturonate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.1e-05      0.18      57      94 ..     105     143 ..      60     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.1e-05
  Rhamnogal_lyase  57 dnlledkeenrGywdlvwskegkks.ktdklkGtkfeiv 94 
                        +++dk++ rGy  +v  k + +  k + lkG +f + 
       EHU00311.1 105 GIVVDDKDQSRGYHSVVIVKADSPYkKLEDLKGKSFGMA 143
                      45899***************99987699*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2583.60
//
Query:       EHU00312.1  [L=276]
Description: ATP-binding component of an ABC superfamily phosphonate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-33  115.7   0.0      4e-33  114.8   0.0    1.4  1  ABC_tran     ABC transporter
    4.5e-07   30.0   0.1    0.00063   19.6   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.6e-05   24.9   1.3    9.6e-05   22.3   0.5    2.1  2  RsgA_GTPase  RsgA GTPase
    3.4e-05   23.4   0.8    0.00016   21.2   0.7    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00065   19.4   0.1     0.0021   17.8   0.1    1.9  1  AAA_29       P-loop containing region of AAA domain
    0.00072   20.0   0.1     0.0019   18.6   0.1    1.8  1  AAA_16       AAA ATPase domain
     0.0024   17.4   0.0     0.0037   16.8   0.0    1.3  1  KdpD         Osmosensitive K+ channel His kinase sensor domai
     0.0064   16.2   0.0       0.59    9.8   0.0    2.1  2  AAA_15       AAA ATPase domain
     0.0066   16.7   0.1      0.015   15.5   0.1    1.8  1  AAA_22       AAA domain
      0.007   16.4   0.1      0.016   15.3   0.1    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.018   14.7   0.1      0.044   13.5   0.0    1.6  2  AAA_30       AAA domain
      0.028   14.1   0.0      0.054   13.2   0.0    1.5  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
      0.034   14.4   0.1        1.2    9.4   0.0    3.0  2  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.086   12.4   0.1       0.13   11.8   0.1    1.4  1  AAA_25       AAA domain
      0.093   13.1   0.0        0.2   12.1   0.0    1.5  1  EF-hand_3    EF-hand
      0.096   13.2   0.0       0.17   12.4   0.0    1.3  1  AAA_23       AAA domain
       0.11   12.4   0.1       0.26   11.2   0.1    1.6  1  NACHT        NACHT domain
       0.12   11.8   0.0       0.17   11.3   0.0    1.2  1  Cellulase    Cellulase (glycosyl hydrolase family 5)
       0.14   11.4   0.0       0.29   10.4   0.0    1.5  1  Zeta_toxin   Zeta toxin
       0.15   11.4   0.2       0.35   10.2   0.0    1.7  2  DnaB_C       DnaB-like helicase C terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.0   4.5e-36     4e-33       1     137 []      40     201 ..      40     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 4.5e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE........EETTCEGGG.......B-HHHCCHCEEEE-SS--S-TTSBHHHH..... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei........lldgkdlke.......qeleslrkeigvlpqepqlfpeltvren..... 79 
                 l+nvs++l++ge+va++G++GaGKStLl +l g  +  +G i                +       ++++++r++ g+++q+ +l p+l v +n     
  EHU00312.1  40 LDNVSFDLHAGELVAVIGRSGAGKSTLLHMLNGTISASQGAIislhhgeaD-------RnvvnlssRQMREWRAQCGMIFQDFCLVPRLDVLTNvllgr 131
                 79***************************************9665555332.......1444456699******************************* PP

                 ................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                 ++++++ ++l+++++   + +++    ++LSgGq qrva++ral+++pk+ll+DEp a
  EHU00312.1 132 lsqtstlksffkvfsdADRARAIQLLEWMNMLPQALQRA----ENLSGGQMQRVAICRALMQNPKILLADEPVA 201
                 *************98888888999999999988777777....*****************************75 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0016       1.5       2      19 ..      53      70 ..      52      99 .. 0.85
   2 !   19.6   0.0     7e-07   0.00063     242     302 ..     178     235 ..     136     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0016
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                 ++iG+ g+GKS+LL  l
  EHU00312.1 53 VAVIGRSGAGKSTLLHML 70
                689***********9766 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 7e-07
      AAA_21 242 krllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                  +  a+  al + +   ++ll DEp ++L+Pk ++r++++l++ s+ g+ v++  HS +l+
  EHU00312.1 178 MQRVAICRALMQNP---KILLADEPVASLDPKNTTRIMDVLRQVSEQGISVMVNLHSIELV 235
                 44435555666555...9****************************999999988887775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.5   1.1e-07   9.6e-05      86     131 ..      36      82 ..       9      98 .. 0.82
   2 ?    0.9   0.0      0.41   3.7e+02      24      61 ..     202     237 ..     199     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.1e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++ l++++  l+  ++++++G SG+GKStL+ +l+++ +++ g++ 
   EHU00312.1  36 SNKVLDNVSFDLHAgELVAVIGRSGAGKSTLLHMLNGTISASQGAII 82 
                  4567888888888879*********************9888877764 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.41
                  ESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--H CS
  RsgA_GTPase  24 slkepelslnlldrfLvlaeekgiepvivlnKiDllee 61 
                  sl+ p  ++ ++  +L ++ e+gi++++ l  i+l+++
   EHU00312.1 202 SLD-P-KNTTRIMDVLRQVSEQGISVMVNLHSIELVKS 237
                  555.3.46667777999************999999875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.7   1.8e-07   0.00016      25     204 ..      51     237 ..      23     249 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.8e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTT..TTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSS.SCEEEEEEEETTSE...EEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx...xxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersak..klrseklsdlihk.skekasvkkaeveitfdnedkklkiek.eevsisrrvkrkge...seykingk 116
                 ++ a++G+ G+GKs ll  +  +++ ++    +l + ++++ + + s+++ +  +a+  ++f++     + +  ++v + r  +++      +++ +  
  EHU00312.1  51 ELVAVIGRSGAGKSTLLHMLNGTISASQGAiiSLHHGEADRNVVNlSSRQMREWRAQCGMIFQDFCLVPRLDVlTNVLLGRLSQTSTLksfFKVFSDAD 149
                 5789****************9999987553226777777665555588999999999999997766653333313344444333332221244444544 PP

                 EE-H...HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC CS
                 xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 117 evtk...kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlek 204
                 +++     e +++l++a    e+LSgG+ + va  +  A+   +p  + l De  a LD kn++++ ++l++ s++   ++v  ++ e+++ 
  EHU00312.1 150 RARAiqlLEWMNMLPQALQRAENLSGGQMQRVA--ICRALM-QNP-KILLADEPVASLDPKNTTRIMDVLRQVSEQgISVMVNLHSIELVKS 237
                 444311277889999999999******976555..554543.344.46789*********************99874556665555555554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.3e-06    0.0021      13      39 ..      41      67 ..      38      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.3e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ +++++  + + ++G+sG+GKSTll
  EHU00312.1 41 DNVSFDLHAGELVAVIGRSGAGKSTLL 67
                6677888866699*************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.1e-06    0.0019      21      63 ..      49      92 ..      37     224 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.1e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggif...lrgkcdql 63
                +  +elv ++G sG GKs+l+ +l   ++++ g       g++d++
  EHU00312.1 49 A--GELVAVIGRSGAGKSTLLHMLNGTISASQGAIislHHGEADRN 92
                3..489*******************999999655513333444444 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.1e-06    0.0037      41     141 ..     146     246 ..     131     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.1e-06
        KdpD  41 ethgrketealleglevipr...keveykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdv.eelLeagidVittvnvqhleslndvve 135
                 ++ +r++  +lle ++++p+   ++ + +g +++++ +  +l ++p+++l De   +   + ++++r  dv +++ e+gi+V+  vn++ +e ++   +
  EHU00312.1 146 SDADRARAIQLLEWMNMLPQalqRAENLSGGQMQRVAICRALMQNPKILLADEPVASL--DPKNTTRIMDVlRQVSEQGISVM--VNLHSIELVKSYCT 240
                 56678888888888888876111445567788999999999************87766..56788899998457889*****8..88899999999998 PP

        KdpD 136 kitgvr 141
                 ++ g++
  EHU00312.1 241 RVIGIQ 246
                 888876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00066      0.59      19      44 ..      47      71 ..      38     113 .. 0.76
   2 ?    4.7   0.0     0.023        20     322     365 ..     189     231 ..     161     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00066
      AAA_15 19 idlseeltvliGkNnsGKSsileald 44
                ++  e l  +iG+ ++GKS++l++l+
  EHU00312.1 47 LHAGE-LVAVIGRSGAGKSTLLHMLN 71
                34445.99****************96 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.023
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++++ill +EP a+L p++ + +++ l+ +++++   v++  HS
  EHU00312.1 189 QNPKILLADEPVASLDPKNTTRIMDVLRQVSEQGI-SVMVNLHS 231
                 5789****************************998.77777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.7e-05     0.015       7      63 ..      52     114 ..      47     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsstsskdllrellra 63 
                 +++v+G sG+GK+tll +l  +  + + a        +++ vv     +  +++  + +++++
  EHU00312.1  52 LVAVIGRSGAGKSTLLHMLNGTISASQGAIIslhhgeADRNVVNLSSRQMREWRAQCGMIFQD 114
                 789***************999876554444477765544544444444444677666666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.8e-05     0.016       2      22 ..      53      73 ..      52      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                va++Gr+ +GKStL+  l g+
  EHU00312.1 53 VAVIGRSGAGKSTLLHMLNGT 73
                89*************999875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.9e-05     0.044      19      52 ..      51      84 ..      45     107 .. 0.83
   2 ?   -2.1   0.0         3   2.7e+03      93      96 ..     195     198 ..     134     227 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrvigl 52
                 ++++ G+ G+GK+t+l  l+ ++ a++g +i l
  EHU00312.1 51 ELVAVIGRSGAGKSTLLHMLNGTISASQGAIISL 84
                48899******************99997777765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
      AAA_30  93 ivDE 96 
                 + DE
  EHU00312.1 195 LADE 198
                 3333 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     6e-05     0.054       4      63 ..      39     100 ..      36     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6e-05
                  HHHHH.S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEEEEESEEHHHHHHHHHHC CS
                  xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   4 vlDal.fpivqGqrtlipgafgvGktvisqslskqsnsdd.aiiyvgiGergnevaevleef 63 
                  vlD + f +  G+ ++++g +g Gk++++++l    ++++ aii    Ge  ++v ++ ++ 
   EHU00312.1  39 VLDNVsFDLHAGELVAVIGRSGAGKSTLLHMLNGTISASQgAIISLHHGEADRNVVNLSSRQ 100
                  56543277889999******************999877777**********99998876554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.2   1.1e+03      32      57 ..      17      37 ..      11      47 .. 0.67
   2 ?    9.4   0.0    0.0014       1.2      62      89 ..     189     216 ..     147     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.2
     SbcCD_C 32 tlSGGekqflaylalaaalaalyssa 57
                t SGG+k     +  + +l+ +y+s+
  EHU00312.1 17 THSGGQK-----VLSVQGLSKAYGSN 37
                7899999.....44455667777765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++ DE  ++lD++++++++++l+
  EHU00312.1 189 QNPKILLADEPVASLDPKNTTRIMDVLR 216
                 35889999*****************998 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.13      30      57 ..      47      74 ..      37     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_25 30 lpagelallaGapgtGKttlaldlalav 57
                l agel++++G++g+GK+tl+  l  ++
  EHU00312.1 47 LHAGELVAVIGRSGAGKSTLLHMLNGTI 74
                579*****************97665555 PP

>> EF-hand_3  EF-hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022       0.2      20      82 ..     104     167 ..      92     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
   EF-hand_3  20 dqkklgllLeellqvpr.qvgEsaaFggsnvepsvrscFeqvsskkkielehflewlksePqsl 82 
                  + ++g++ +++  vpr  v  +   g  +  ++ +s+F+  s+  ++++ ++lew++  Pq l
  EHU00312.1 104 WRAQCGMIFQDFCLVPRlDVLTNVLLGRLSQTSTLKSFFKVFSDADRARAIQLLEWMNMLPQAL 167
                 46789999********9559999999*999999****************************987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019      0.17      11      38 ..      41      69 ..      32      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTildA 38
                +++++d++   l++++G  GaGK+T+l  
  EHU00312.1 41 DNVSFDLHAgELVAVIGRSGAGKSTLLHM 69
                67889996636***************965 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00029      0.26       2      25 ..      52      75 ..      51      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
                CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawa 25
                lv++ G++G GK+tLl+ l  ++ 
  EHU00312.1 52 LVAVIGRSGAGKSTLLHMLNGTIS 75
                799*************98866655 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.17      37      86 ..     178     233 ..     150     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                 EEEEEEECTGGTTSSTTT........GCTHHHHHHHHHHHHHHHHTT-EEEEEEESST CS
   Cellulase  37 tvRlpvswgelvenapdy........kvdenslerveevvkyakenglyvildiHsee 86 
                 + R++++ + l+ ++p++        + d+++  r+ +v+  + e+g+ v++++Hs e
  EHU00312.1 178 MQRVAIC-RALM-QNPKIlladepvaSLDPKNTTRIMDVLRQVSEQGISVMVNLHSIE 233
                 5567777.3333.34444444444458999*************************973 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00032      0.29      18      49 ..      52      84 ..      44     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
  Zeta_toxin 18 lillgGqpGAGKselaellkdele.rqgnvvrl 49
                l+ + G +GAGKs+l+++l+  +  +qg ++ l
  EHU00312.1 52 LVAVIGRSGAGKSTLLHMLNGTISaSQGAIISL 84
                5667799*************9998777777766 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00039      0.35       8      48 ..      39      79 ..      29     106 .. 0.80
   2 ?   -1.7   0.0       1.7   1.5e+03      83     124 ..     172     218 ..     153     242 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00039
                HHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCST CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  8 dLDkltsGlqkgdliiiAarpsmGktalalniaenaavkek 48
                 LD++   l+ g+l+ + +r++ Gk++l   +  ++ +++ 
  EHU00312.1 39 VLDNVSFDLHAGELVAVIGRSGAGKSTLLHMLNGTISASQG 79
                6999***********************98888777665433 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
                 TSXHHHHHHHHHHHHHHHHSEEEEEEXSSX.....CHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxx RF
      DnaB_C  83 klkeedweklteaieelseaklfiddtpal.....tvseirskarrl 124
                 +l+  ++++++   + +++ k+++ d+p       + ++i   +r++
  EHU00312.1 172 NLSGGQMQRVAICRALMQNPKILLADEPVAsldpkNTTRIMDVLRQV 218
                 45555555555555555555666666654422222223333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2094.72
//
Query:       EHU00313.1  [L=256]
Description: beta-lactamase superfamily I metal-dependent hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-19   68.9   0.3    6.5e-19   68.2   0.3    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain
    5.5e-09   36.3   0.0    8.4e-09   35.7   0.0    1.5  1  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.024   14.5   0.0       0.12   12.2   0.0    1.9  2  Lactamase_B_3  Beta-lactamase superfamily domain
      0.082   13.2   0.1       0.14   12.4   0.1    1.3  1  DUF1922        Domain of unknown function (DUF1922)


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.3   1.4e-22   6.5e-19       2     200 ..      48     219 ..      47     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.4e-22
                    EEEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEE..HHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSE CS
  Lactamase_B_2   2 riLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyap..kgvlavleanfvylaleeepavnvheldwges 95 
                    riL+Dag+ l++   r +        +++i+ +llth H+DH++gl tlr +++k +p+++p  ++  ++l ++   l + ++       l++   
     EHU00313.1  48 RILLDAGLPLLAE--RFQ--------PEDINRILLTHYHMDHVQGLFTLRWGKGKPIPVWGPpdEKGCDDLFKHPGLLDFRPA-------LTPFVA 126
                    9********9877..443........569**********************99988****99665556677777677766666.......777778 PP

                    EEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---HHHHHHHCT..-SEEEEE-S-SSTTHHHH.HHT---STSHHHHC CS
  Lactamase_B_2  96 felgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyipeeigerlgg..adllllditayeddemir.hmgHltpeeaveaa 188
                     ++g  +l++t+ p++h+  +          G++++++g r++++ Dt  +p++ ++ l+g  +d l++d++  ++  + + +  H ++  a+ ++
     EHU00313.1 127 QSFG--DLRVTPLPLQHSRLT---------HGYLFDWHGARLAWLCDTCGLPPDTADFLRGqtLDHLVVDCN--DP--PGQgGRNHNDVTAALTII 207
                    8898..688999999998887.........**********************99999999999*******88..44..45559************* PP

                    TTSSSSEEEEES CS
  Lactamase_B_2 189 adlgakrlvliH 200
                    ++l+++++ liH
     EHU00313.1 208 EALKPHQAWLIH 219
                    ************ PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.9e-12   8.4e-09       4      64 ..      35      86 ..      32     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.9e-12
                 CSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGC CS
  Lactamase_B  4 dpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglggl 64
                 +  +s lie + + iL D+G++  a+r+         +p+d+ +++lTH+H DH+ gl  l
   EHU00313.1 35 RAPTSALIEAGRERILLDAGLPLLAERF---------QPEDINRILLTHYHMDHVQGLFTL 86
                 567899****************999996.........8******************99766 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.8e-05      0.12       8      50 ..      38      80 ..      36      95 .. 0.94
   2 ?   -0.1   0.0      0.16   7.3e+02      97     157 ..     146     213 ..     120     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
  Lactamase_B_3  8 nsflletagarilvDPfkanlgyeppaeeaDlvlisqaledHa 50
                   +s l+e +  ril+D + + l  + ++e+++ +l+++ + dH 
     EHU00313.1 38 TSALIEAGRERILLDAGLPLLAERFQPEDINRILLTHYHMDHV 80
                   58999*999********999999*******************7 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
  Lactamase_B_3  97 ngflleqdgltiyhlGh.lahelsseelkelgrvDvvltPvgg......pltlgqeealelakrLkpk 157
                     g+l++  g ++++l + ++ +++ +++   + +D +++   +          +   al ++++Lkp+
     EHU00313.1 146 HGYLFDWHGARLAWLCDtCGLPPDTADFLRGQTLDHLVVDCNDppgqggRNHNDVTAALTIIEALKPH 213
                    57888888888888888334555666666666666666665555555555566666667777777765 PP

>> DUF1922  Domain of unknown function (DUF1922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.2e-05      0.14       3      38 ..      16      51 ..      15      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
                EEEETTS--EEEETT-SEEEETTTEEEE--SSS-BS CS
     DUF1922  3 ifRCdCGRvlYakegaktrkCvCGktikvkerrilk 38
                +f CdCG  l a++ a+ r+ +    i+  + ril 
  EHU00313.1 16 VFGCDCGACLRARQFARYRRAPTSALIEAGRERILL 51
                799******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2047.31
//
Query:       EHU00314.1  [L=178]
Description: ribose 1,5-bisphosphokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-08   33.6   0.0    3.6e-08   33.3   0.0    1.1  1  Guanylate_kin  Guanylate kinase
      4e-07   30.6   0.0    5.9e-06   26.8   0.0    2.1  1  AAA_18         AAA domain
    3.5e-06   27.3   0.1    2.6e-05   24.4   0.1    2.1  1  AAA_33         AAA domain
  ------ inclusion threshold ------
      0.027   14.9   0.7       0.19   12.1   0.0    2.2  2  AAA_16         AAA ATPase domain
      0.046   13.5   0.0      0.092   12.5   0.0    1.4  1  AAA_29         P-loop containing region of AAA domain
      0.091   13.0   0.0       0.24   11.7   0.0    1.8  2  AAA_22         AAA domain
       0.21   11.5   0.0        0.3   11.0   0.0    1.4  1  RsgA_GTPase    RsgA GTPase


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.4e-11   3.6e-08       2     180 ..       2     175 ..       1     177 [. 0.86

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.4e-11
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEE CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkivi 97 
                    +r++ l+gpsg Gk+sl + L +  pe   +   ++Tr+    +v G++   +++ e+ +  +   f    + +g +yg   ++i + l+ g++v+
     EHU00314.1   2 ARLIWLIGPSGSGKDSLLDRLREAPPEGLLIAHRYITRPH---DVGGENHIALTEAEFIRRDALGLFAVSWQAHGFYYGV-GSEIDHWLACGQNVL 93 
                    68999****************9999998888888889875...6799999999*******99999999999999999995.689************ PP

                    EE--CHHHHHHHHT...TTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGGCSSEEEEES.SHHHHHHHHHHHHH CS
  Guanylate_kin  98 LDvdiqavkqlrka...elspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqeyefdvvivnd.dleealkklkelle 180
                       + q+++++r+    +l p+++     s  +l  rl++rg+e+e  +a+rla a ++  e    + ++nd  lee++++l++lle
     EHU00314.1  94 VNGSRQHLEHVRARygtRLLPLCL---EVSSAVLAARLRQRGRESEAAIAQRLARADRHQPEG--CLRLNNDgALEETVQQLRQLLE 175
                    ************973224555555...55999*********************9988765555..6788888459********9997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.3e-09   5.9e-06       1     117 [.       5     135 ..       5     146 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.3e-09
      AAA_18   1 IlltGtpGvGKttlakeLskr..lgf......gvnlrdvakenglllevdpe.........aldeskrldedkldklldaleenss............. 69 
                 I+l G++G+GK +l ++L++   +g+       ++  dv  en++ l++ ++         a                     + +             
  EHU00314.1   5 IWLIGPSGSGKDSLLDRLREAppEGLliahryITRPHDVGGENHIALTEAEFirrdalglfA-------------------VSWQAhgfyygvgseidh 84 
                 89****************99843122344444333333333333333333333333332232...................222224444455555554 PP

      AAA_18  70 aleegknlvidghlaeleseaakdikk...vvLtaspeelleRlekRgyee 117
                  l+ g+n+++ g +++le  +a+ + +    +L++s  +l+ Rl++Rg+e+
  EHU00314.1  85 WLACGQNVLVNGSRQHLEHVRARYGTRllpLCLEVSSAVLAARLRQRGRES 135
                 34558999**********999997777*********************765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1     1e-08   2.6e-05       1     129 [.       4     142 ..       4     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1e-08
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvil....dat.......nlsrrerar 87 
                 l++l+G++GsGK  l++rl ++ + + l++  ++ r + + +++++  +t++++  ++ l  +a + +++g+ + +    d          l +  r+ 
  EHU00314.1   4 LIWLIGPSGSGKDSLLDRLREAPPeGLLIAHRYITRPHDVGGENHI-ALTEAEFIRRDALGLFAVSWQAHGFYYGVgseiD-HwlacgqnVLVNGSRQH 100
                 799****************999998888888888887777777777.5788888888899888889999998888855541.03444453666799999 PP

      AAA_33  88 flklarrlgvpvrivvvetdeetlkeRlakRaangddrsevp 129
                 + ++  r+g + + + +e++ ++l++Rl++R +++++++   
  EHU00314.1 101 LEHVRARYGTRLLPLCLEVSSAVLAARLRQRGRESEAAIAQR 142
                 ****99***************************977655444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.4e-05      0.19      25      51 ..       3      28 ..       1      66 [. 0.82
   2 ?    0.9   0.8      0.21   5.3e+02       4      24 ..     132     151 ..      82     178 .] 0.58

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.4e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                +l+ l+G+sG+GK sl+++l++ +  +
  EHU00314.1  3 RLIWLIGPSGSGKDSLLDRLRE-APPE 28
                6799*****************5.5555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
      AAA_16   4 GReeeleqLlsalervrsgrp 24 
                 GRe e +++++ l r+ +++p
  EHU00314.1 132 GRESE-AAIAQRLARADRHQP 151
                 22333.233333333333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.6e-05     0.092      26      40 ..       6      20 ..       2      24 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.6e-05
      AAA_29 26 lltGpsGsGKSTllD 40
                 l+GpsGsGK +llD
  EHU00314.1  6 WLIGPSGSGKDSLLD 20
                589***********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.5e-05      0.24       6      37 ..       3      34 ..       1      72 [. 0.82
   2 ?   -1.3   0.1      0.94   2.4e+03      54      54 ..     137     137 ..      90     176 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaee 37
                +++ ++G+sG+GK  ll rl+e  +e   +++
  EHU00314.1  3 RLIWLIGPSGSGKDSLLDRLREAPPEGLLIAH 34
                7899******************9987766655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.94
      AAA_22  54 k 54 
                 +
  EHU00314.1 137 A 137
                 2 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012       0.3     100     121 ..       3      24 ..       1      59 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                  SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallp 121
                  +++ l+G+SG GK +L+++l++
   EHU00314.1   3 RLIWLIGPSGSGKDSLLDRLRE 24 
                  56789**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1284.64
//
Query:       EHU00315.1  [L=239]
Description: carbon-phosphorus lyase complex subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-27   95.7   0.0    4.3e-27   95.3   0.0    1.1  1  ABC_tran         ABC transporter
      9e-08   32.7   0.0    1.2e-07   32.3   0.0    1.4  1  AAA_16           AAA ATPase domain
    1.1e-05   25.3   0.0    1.8e-05   24.7   0.0    1.3  1  RsgA_GTPase      RsgA GTPase
    1.3e-05   24.7   0.0     0.0083   15.6   0.0    2.2  2  SMC_N            RecF/RecN/SMC N terminal domain
    3.4e-05   23.8   0.0      0.079   12.8   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00028   21.0   0.6    0.00073   19.7   0.6    1.9  1  AAA_33           AAA domain
    0.00029   20.5   0.0    0.00054   19.7   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
    0.00032   21.0   0.0    0.00059   20.1   0.0    1.4  1  AAA_22           AAA domain
      0.005   16.6   0.0      0.012   15.3   0.0    1.6  2  AAA_30           AAA domain
     0.0074   16.4   0.0      0.015   15.4   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0099   16.4   0.0      0.015   15.8   0.0    1.2  1  AAA_23           AAA domain
  ------ inclusion threshold ------
      0.013   14.7   0.0      0.019   14.1   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.017   15.1   0.0      0.029   14.3   0.0    1.4  1  NACHT            NACHT domain
      0.034   13.9   0.1       0.13   12.0   0.0    1.9  2  IstB_IS21        IstB-like ATP binding protein
      0.044   13.0   0.0       0.06   12.5   0.0    1.2  1  NB-ARC           NB-ARC domain
      0.046   14.0   0.0      0.083   13.1   0.0    1.5  1  AAA_28           AAA domain
      0.069   13.0   0.0        0.1   12.4   0.0    1.3  1  CPT              Chloramphenicol phosphotransferase-like prot
      0.077   12.6   0.0       0.13   11.8   0.0    1.4  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.078   13.5   0.0       0.14   12.7   0.0    1.6  1  AAA_18           AAA domain
      0.097   12.7   0.0       0.17   11.9   0.0    1.3  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.097   12.0   0.0       0.16   11.3   0.0    1.3  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
        0.1   12.2   0.0       0.23   11.0   0.0    1.6  2  AAA_25           AAA domain
       0.13   12.0   0.0       0.21   11.3   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.17   12.3   0.0        0.3   11.5   0.0    1.4  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   5.8e-30   4.3e-27       1     137 []      32     186 ..      32     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 5.8e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.......B-HHHCCHCEEEE-SS--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.......qeleslrkeigvlpqepqlfpeltvren............ 79 
                 l+n  l++++ge+v++ G++G+GKStLl++l+g+++ ++G+i+++ + ++ +       q + + r  ig+++q  ++ p++   e             
  EHU00315.1  32 LQNACLDVSQGECVVLHGHSGSGKSTLLRALYGNYQANSGHIWVQhQGEWVDmaqaparQIIAIRRDTIGWVSQFLRVIPRVPTLEIvmqpllergver 130
                 678899************************************7775444444577888899********************9888889999**888887 PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    +++++++l++l+ ++   + ++  ps++SgG++qrv +ar ++ + ++lllDEpta
  EHU00315.1 131 gFCEARAKELLTRLNVPQ---RLWSLAPSTFSGGEQQRVNIARGFIADYPVLLLDEPTA 186
                 777788999999999777...7777779*****************************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.6e-10   1.2e-07      16      67 ..      36      93 ..      29     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.6e-10
      AAA_16 16 lervrsgrpelvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesa.....i 67
                  +v++g  e+v+l+G+sG+GKs+l+r+l+  ++++  ++++  +g++++  +a     i
  EHU00315.1 36 CLDVSQG--ECVVLHGHSGSGKSTLLRALYGNYQANsgHIWVqHQGEWVDMAQAparqiI 93
                4457777..89*******************999999644555788888888444232331 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.4e-08   1.8e-05      77     130 ..      16      73 ..       2      80 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.4e-08
                  SEEEE--TTTHTTHHHHHHHC....TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  77 yevllvsaktkegleelkell....kdktsvlvGqSGvGKStLinallpelelktgev 130
                  +++++++++++++l  l++++    +++++vl G+SG GKStL+ al ++ +++ g++
   EHU00315.1  16 CKTFVLHNQNGAALPVLQNACldvsQGECVVLHGHSGSGKSTLLRALYGNYQANSGHI 73 
                  6777777888888888877653332669**********************99988887 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0044       3.3      26      44 ..      44      62 ..      33      70 .. 0.84
   2 !   15.6   0.0   1.1e-05    0.0083     133     204 ..     154     221 ..     129     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0044
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                  ++ G+ GSGKs ll A+
  EHU00315.1 44 CVVLHGHSGSGKSTLLRAL 62
                56889***********998 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.1e-05
                 STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 133 skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                  ++++SgGe++ v +a  f    +   p+ llDe  a LD  n ++v+ l+++++++   iv  +++e +++
  EHU00315.1 154 APSTFSGGEQQRVNIARGF----IADYPVLLLDEPTASLDSVNSAAVVGLIEQARERGAAIVGIFHDEAVRE 221
                 5667889998888777655....5678*****************************9988886666665544 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00011     0.079       3      22 ..      46      65 ..      44     113 .. 0.74
   2 !    9.3   0.0    0.0012       0.9     259     292 ..     177     210 ..     148     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                vl G  gsGKS+LL+al++ 
  EHU00315.1 46 VLHGHSGSGKSTLLRALYGN 65
                777889***********974 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0012
      AAA_21 259 sllliDEpEngLHPkllrrllellkelsrngaQv 292
                 ++ll+DEp ++L+    + +++l+++++++ga +
  EHU00315.1 177 PVLLLDEPTASLDSVNSAAVVGLIEQARERGAAI 210
                 9***********************9999988765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   9.7e-07   0.00073       2     101 ..      45     150 ..      44     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.7e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr.rer....arflkl 91 
                 v+l+G++GsGKstl++ l+ + +     + +    +        q + ++ + ++ ++++++++++r   +     i+ +++l+r  er    ar  +l
  EHU00315.1  45 VVLHGHSGSGKSTLLRALYGNYQansgHIWVQHQGEWVD---MAQAPARQIIAIRRDTIGWVSQFLRVIPRVPTLEIVMQPLLERgVERgfceARAKEL 140
                 799***************855443323333333333333...334444555666677777777777777777777777777777766666777677777 PP

      AAA_33  92 arrlgvpvri 101
                 + rl+vp r+
  EHU00315.1 141 LTRLNVPQRL 150
                 7777777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.2e-07   0.00054      16      42 ..      36      62 ..      31      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.2e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAi 42
                 +++++ + ++l G+sGsGKSTll A+
  EHU00315.1 36 CLDVSQGECVVLHGHSGSGKSTLLRAL 62
                5667755599*************9775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   7.9e-07   0.00059       4      37 ..      41      74 ..      38     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.9e-07
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee 37
                +  ++v++G+sG+GK+tllr l  ++++ + + +
  EHU00315.1 41 QGECVVLHGHSGSGKSTLLRALYGNYQANSGHIW 74
                6789******************999977666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05     0.012      16      49 ..      40      73 ..      32     103 .. 0.84
   2 ?   -2.1   0.0       3.6   2.7e+03     101     119 ..     192     210 ..     137     213 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrv 49
                s+  ++vl+G  G+GK+t+l+al   ++a+ g++
  EHU00315.1 40 SQGECVVLHGHSGSGKSTLLRALYGNYQANSGHI 73
                344599*****************99999885444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.6
      AAA_30 101 dtkqlaallkaaekagakv 119
                 +++ +  l+++a+++ga +
  EHU00315.1 192 NSAAVVGLIEQARERGAAI 210
                 3333344555555556555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-05     0.015       2      27 ..      45      71 ..      44      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-05
                EEEEESTTSSHHHHHHHHHTS.TEEES CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.kaivs 27
                v++ G++ +GKStL++al g+ +a  +
  EHU00315.1 45 VVLHGHSGSGKSTLLRALYGNyQANSG 71
                7899***************98666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-05     0.015      21      39 ..      44      62 ..      31      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-05
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                 ++++G+ G+GK+T+l+A+
  EHU00315.1 44 CVVLHGHSGSGKSTLLRAL 62
                679**************97 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.019      52      81 ..      41      70 ..      16     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
      DUF815 52 pannvLLwGarGtGKSslvkallneyaeeg 81
                + + v+L G+ G+GKS+l++al  +y++++
  EHU00315.1 41 QGECVVLHGHSGSGKSTLLRALYGNYQANS 70
                566799******************999876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.9e-05     0.029       2      21 ..      44      63 ..      43      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.9e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                 v+l+G +GsGK+tLl+ l 
  EHU00315.1 44 CVVLHGHSGSGKSTLLRALY 63
                589*************9986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.13      44      67 ..      39      62 ..       2      86 .. 0.84
   2 ?   -0.9   0.0       1.5   1.1e+03     109     145 ..     176     211 ..     162     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
   IstB_IS21 44 iekkenivllGpsGvGKshlaial 67
                +++ e++vl G+sG GKs l  al
  EHU00315.1 39 VSQGECVVLHGHSGSGKSTLLRAL 62
                6789***************99988 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
   IstB_IS21 109 vdllilDdlgllpldqaeaellfeviekryerrsiii 145
                   +l+lD+  +  ld+ +++ +  +ie++ er + i+
  EHU00315.1 176 YPVLLLDEP-TASLDSVNSAAVVGLIEQARERGAAIV 211
                 568888886.467888888889999999999998887 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.1e-05      0.06      21      49 ..      43      71 ..      32     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.1e-05
                EEEEEEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnksdeveg 49
                  v l+G  G+GK+tl++  + +++   g
  EHU00315.1 43 ECVVLHGHSGSGKSTLLRALYGNYQANSG 71
                4799**************99988665544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.083       1      28 [.      44      76 ..      44     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_28  1 kivitGgestGKTtlleaLa....ar.gypvvp 28
                ++v+ G +++GK+tll+aL     a+ g+ +v+
  EHU00315.1 44 CVVLHGHSGSGKSTLLRALYgnyqANsGHIWVQ 76
                59*****************96543225777775 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014       0.1       1      24 [.      42      65 ..      42      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                --EEEEEE-TTSSHHHHHHHHHHH CS
         CPT  1 ariilLnGgsssGKsslaralqev 24
                ++ ++L+G s sGKs+l ral   
  EHU00315.1 42 GECVVLHGHSGSGKSTLLRALYGN 65
                5789****************9654 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.13       2      26 ..      44      68 ..      43      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                EEEEEESTTCCHHHHHHHHHCT--S CS
        cobW  2 vtvltGflGsGKTtLlnhllenrag 26
                ++vl G  GsGK+tLl++l  n + 
  EHU00315.1 44 CVVLHGHSGSGKSTLLRALYGNYQA 68
                5799**************9954443 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.14       1      39 [.      45      81 ..      45     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglll 39
                ++l G +G+GK+tl ++L     +  n+++++ +++ ++
  EHU00315.1 45 VVLHGHSGSGKSTLLRALYGN--YQANSGHIWVQHQGEW 81
                6899**************443..4666666666655554 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.17      18      43 ..      39      66 ..      19      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
                H..TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrglakal 43
                +  g++++L+G  G+GK+tl r+l  ++
  EHU00315.1 39 VsqGECVVLHGHSGSGKSTLLRALYGNY 66
                134788****************997665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00021      0.16      36      59 ..      40      62 ..       7      65 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
                  GGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 36 kkmashllvaGatgsGKStalntL 59
                  ++ +  ++++G +gsGKSt l++L
    EHU00315.1 40 SQGE-CVVLHGHSGSGKSTLLRAL 62
                  4444.6899*************98 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00031      0.23      28      53 ..      38      62 ..      13      87 .. 0.79
   2 ?   -3.1   0.0       6.4   4.8e+03     168     188 ..     195     215 ..     185     216 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00031
      AAA_25 28 gllpagelallaGapgtGKttlaldl 53
                ++   ge ++l G++g+GK+tl+  l
  EHU00315.1 38 DV-SQGECVVLHGHSGSGKSTLLRAL 62
                55.5899***************9766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.4
      AAA_25 168 lvealeriarrtgaavllvhH 188
                 +v  l + ar+ gaa++++ H
  EHU00315.1 195 AVVGLIEQARERGAAIVGIFH 215
                 333444446777888888877 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00028      0.21       2      21 ..      46      65 ..      45      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     v hG  G+GKStl+r l+ +
       EHU00315.1 46 VLHGHSGSGKSTLLRALYGN 65
                     89*************99866 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0004       0.3       1      26 [.      45      70 ..      45     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0004
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkkl 26
                  ++l+G+sg GKStl + L  + + ++
    EHU00315.1 45 VVLHGHSGSGKSTLLRALYGNYQANS 70
                  689*************9876666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1792.33
//
Query:       EHU00316.1  [L=253]
Description: carbon-phosphorus lyase complex subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-32  111.3   0.0    6.7e-32  110.9   0.0    1.2  1  ABC_tran      ABC transporter
    2.2e-08   34.3   0.0    0.00034   20.5   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    9.2e-06   26.1   0.0    1.6e-05   25.3   0.0    1.4  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
    1.2e-05   25.8   0.3    2.1e-05   25.0   0.3    1.4  1  AAA_16        AAA ATPase domain
    0.00016   22.0   0.4     0.0013   19.0   0.4    2.1  1  AAA_22        AAA domain
    0.00022   20.9   0.0    0.00051   19.7   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
    0.00089   19.2   0.1     0.0039   17.1   0.0    2.0  2  NACHT         NACHT domain
    0.00091   19.8   0.0     0.0014   19.2   0.0    1.2  1  AAA_23        AAA domain
      0.001   18.7   1.5      0.014   15.0   1.5    2.2  1  AAA_25        AAA domain
     0.0028   17.8   0.1     0.0066   16.6   0.1    1.8  1  AAA_33        AAA domain
      0.003   17.5   0.0     0.0053   16.7   0.0    1.4  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
     0.0066   16.4   0.0      0.014   15.3   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.036   13.8   0.2    1.9  1  AAA_30        AAA domain
      0.014   15.1   0.0        2.1    7.9   0.0    2.0  2  AAA_15        AAA ATPase domain
      0.015   15.3   0.1      0.046   13.7   0.0    1.7  2  AAA_5         AAA domain (dynein-related subfamily)
      0.017   14.7   0.0      0.029   13.9   0.0    1.4  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.025   14.0   0.0        4.8    6.5   0.1    2.3  2  TniB          Bacterial TniB protein
      0.025   14.8   0.0      0.051   13.8   0.0    1.5  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.028   13.7   0.1      0.078   12.3   0.0    1.7  2  Zeta_toxin    Zeta toxin
      0.031   14.3   0.0      0.092   12.8   0.0    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
      0.031   14.0   0.0      0.062   13.0   0.0    1.5  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.033   13.6   0.2      0.068   12.6   0.0    1.5  1  Pox_A32       Poxvirus A32 protein
      0.035   14.7   0.0      0.076   13.6   0.0    1.6  1  AAA_18        AAA domain
      0.042   14.1   0.1       0.26   11.5   0.0    2.1  3  AAA_28        AAA domain
      0.053   13.6   0.0        0.1   12.7   0.0    1.4  1  DUF87         Helicase HerA, central domain
      0.058   13.8   0.0       0.62   10.5   0.0    2.2  1  AAA           ATPase family associated with various cellular 
       0.07   13.0   0.0        1.4    8.8   0.0    2.2  2  Rad17         Rad17 P-loop domain
      0.071   13.5   0.0       0.13   12.7   0.0    1.3  1  Propep_M14    Carboxypeptidase activation peptide
      0.074   12.5   0.0        2.1    7.7   0.0    2.0  2  SMC_N         RecF/RecN/SMC N terminal domain
       0.09   11.9   0.0       0.14   11.3   0.0    1.3  1  NB-ARC        NB-ARC domain
      0.098   11.9   0.0       0.15   11.3   0.0    1.2  1  DUF2813       Protein of unknown function (DUF2813)
       0.11   12.2   0.0        0.2   11.3   0.0    1.4  1  AAA_24        AAA domain
       0.16   12.4   0.0       0.42   11.0   0.0    1.7  1  RNA_helicase  RNA helicase
       0.16   12.2   0.0       0.28   11.4   0.0    1.5  1  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.16   12.3   0.1        0.9    9.9   0.1    2.1  1  AAA_19        AAA domain
       0.17   11.9   0.0       0.62   10.1   0.0    1.8  2  AAA_14        AAA domain
       0.22   10.8   0.0       0.34   10.1   0.0    1.3  1  Septin        Septin


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   1.4e-34   6.7e-32       2     136 ..      24     175 ..      23     176 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 1.4e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren...........esde 83 
                 ++vs++l++ge+++ivGe+G+GK+tLl+ l+  l p++G i++ ++dl +    ++++ lr  +gv++q+  + l p++t++ n           ++ e
  EHU00316.1  24 EDVSFDLYPGEVLGIVGESGSGKTTLLRSLSARLAPQAGAIHYLQRDLYQmsesDRRRLLRTAWGVVHQHplEGLRPQVTAGGNigerlmavghrHYGE 122
                 79*********************************************9999999999*************9999*************9**999985555 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   ++a ++l+ +e++++++++ p+++SgG++qr+++ar l+++pkl+++DEpt
  EHU00316.1 123 IRAQASHWLQAVEIAANRIDDLPTTFSGGMQQRLQIARNLVTQPKLVFMDEPT 175
                 56667777777778889999********************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00029      0.14       3      20 ..      37      54 ..      35      81 .. 0.86
   2 !   20.5   0.0   7.1e-07   0.00034     236     299 ..     147     208 ..     111     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00029
      AAA_21  3 vliGpNgsGKSnLLdald 20
                +++G  gsGK++LL+ l+
  EHU00316.1 37 GIVGESGSGKTTLLRSLS 54
                79*************995 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 7.1e-07
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                  +S G+++ l ++  l  ++   +l++ DEp  gL+ ++++rll+ll+ l r  +  v+++TH+ 
  EHU00316.1 147 TFSGGMQQRLQIARNLVTQP---KLVFMDEPTGGLDVSVQARLLDLLRTLVReLNLAVVIVTHDL 208
                 46778887767777777766...9***********************66666699********96 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.3e-08   1.6e-05       1      25 [.     227     251 ..     227     253 .] 0.95

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.3e-08
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsv 25 
                 vE g +++++d+p+HPYT++L++sv
  EHU00316.1 227 VESGLTDRVLDDPHHPYTQLLVSSV 251
                 8**********************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   4.2e-08   2.1e-05      25     162 ..      34     197 ..      29     219 .. 0.53

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.2e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.ipysalaqalareellrqllde.........................aesaeleaw 97 
                 e++ ++GesG+GK++l+r+l  +l  + g   + + d ++++   +  l++++ + +++ q   e                         +  a++++w
  EHU00316.1  34 EVLGIVGESGSGKTTLLRSLSARLAPQAGAIHYLQRDLYQMSeSDRRRLLRTA-W-GVVHQHPLEglrpqvtaggnigerlmavghrhygEIRAQASHW 130
                 566799******************99965555555555544422223366666.5.6666666663333334445555555555555555444455555 PP

      AAA_16  98 rekleeala..................................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrll 162
                  ++ e a++                                  +++ l+ +   rll+ll+ l+                                r+l
  EHU00316.1 131 LQAVEIAANriddlpttfsggmqqrlqiarnlvtqpklvfmdePTGGLDVSVQARLLDLLRTLV--------------------------------REL 197
                 5555554444444444444443333333333333333333322222222222244444444444................................332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.4   2.7e-06    0.0013       8      37 ..      36      65 ..      32     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.7e-06
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee 37
                l ++GesG+GKTtllr l  +l  +a a +
  EHU00316.1 36 LGIVGESGSGKTTLLRSLSARLAPQAGAIH 65
                559*****************9965443333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-06   0.00051      12      50 ..      23      61 ..      21      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-06
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                f++ ++++ + ++  ++G+sGsGK+Tll +++a L p+ 
  EHU00316.1 23 FEDVSFDLYPGEVLGIVGESGSGKTTLLRSLSARLAPQA 61
                677778888888889***************999999987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.1e-06    0.0039       3      25 ..      36      58 ..      34      85 .. 0.89
   2 ?   -0.5   0.0       2.1     1e+03     100     122 ..     181     201 ..     141     223 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.1e-06
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                + + Ge+GsGKTtLl++l   +a
  EHU00316.1 36 LGIVGESGSGKTTLLRSLSARLA 58
                5699**************98887 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.1
                 .........HHHHHCTTTTT--E CS
       NACHT 100 kekqpvrtlLselirkkllpeas 122
                 + ++++ +lL++l+r+  l  a 
  EHU00316.1 181 SVQARLLDLLRTLVRE--LNLAV 201
                 3344555555555555..33333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.8e-06    0.0014       9      40 ..      22      54 ..      21      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.8e-06
      AAA_23  9 sfrdqeidFsk.gltlItGpNGaGKTTildAik 40
                 f+d+++d+ +  +  I+G+ G+GKTT+l+ + 
  EHU00316.1 22 GFEDVSFDLYPgEVLGIVGESGSGKTTLLRSLS 54
                6899999998835889*************9886 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.5   2.8e-05     0.014      32     134 ..      32     132 ..      25     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-05
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlg.pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv..eslpLfakdrggtllt 127
                  ge+  ++G +g+GKttl+ +l++ +a      g +  +   + ly   E ++ +l r ++ v +++++ +  + +++ g   e+l+ +  ++ g++++
  EHU00316.1  32 PGEVLGIVGESGSGKTTLLRSLSARLAPQA---GaI--HYLQRDLYQMSESDRRRLLRTAWGVVHQHPLEGLRPQVTAGGNigERLMAVGHRHYGEIRA 125
                 4888889********************333...422..2456778888999999999999999999966555544443332233344444444444444 PP

      AAA_25 128 advdale 134
                 ++ ++l+
  EHU00316.1 126 QASHWLQ 132
                 4444433 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.4e-05    0.0066       4      33 ..      38      82 ..      35     220 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-05
      AAA_33  4 lvGlpGsGKstlaerllkklg....avllssdt...........l 33
                +vG +GsGK+tl+++l ++l+    a++  + +           l
  EHU00316.1 38 IVGESGSGKTTLLRSLSARLApqagAIHYLQRDlyqmsesdrrrL 82
                79**************88888666666644444133333333330 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.1e-05    0.0053       1      27 [.      35      61 ..      35      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-05
        MobB  1 vlgivgksgsGKTtLleklipelkarg 27
                vlgivg sgsGKTtLl  l + l+ + 
  EHU00316.1 35 VLGIVGESGSGKTTLLRSLSARLAPQA 61
                79***************9988887665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.9e-05     0.014      87     130 ..      20      64 ..       8      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-05
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++g+e+++  l   ++  +vG+SG GK+tL+ +l  +l  + g++
   EHU00316.1  20 GKGFEDVSFDLYPgEVLGIVGESGSGKTTLLRSLSARLAPQAGAI 64 
                  567788888777669999****************99887777766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   7.5e-05     0.036      20      47 ..      35      72 ..      30     207 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.5e-05
      AAA_30 20 vavltGpAGtGKttalkal.reaweaag.........g 47
                v  ++G  G+GKtt+l++l ++++ +ag         +
  EHU00316.1 35 VLGIVGESGSGKTTLLRSLsARLAPQAGaihylqrdlY 72
                7789***************5555555565555555550 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0044       2.1      13      43 ..      22      53 ..      21      60 .. 0.81
   2 ?    5.3   0.0     0.028        13     322     365 ..     164     207 ..     152     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0044
      AAA_15 13 slkdveidlsee.ltvliGkNnsGKSsileal 43
                 ++dv+ dl +  +  ++G+ +sGK+++l+ l
  EHU00316.1 22 GFEDVSFDLYPGeVLGIVGESGSGKTTLLRSL 53
                5677666666666888*************998 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.028
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 +++++++++EP   L  + q  l +ll+ l+++ +  v+i TH 
  EHU00316.1 164 TQPKLVFMDEPTGGLDVSVQARLLDLLRTLVRELNLAVVIVTHD 207
                 56889**************************************7 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.5e-05     0.046       4      27 ..      38      62 ..      36      82 .. 0.81
   2 ?   -1.7   0.0       5.6   2.7e+03      23      50 ..     194     222 ..     159     236 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-05
                EE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5  4 LvGppGtgKselaerlaaal.nrev 27
                +vG++G+gK++l ++l+a+l  +  
  EHU00316.1 38 IVGESGSGKTTLLRSLSARLaPQAG 62
                69*****************975444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.6
                 B.S--EEEEE--TT--HHHHH--B--... CS
       AAA_5  23 l.nreveyvqltrdtteedlkgrreikng 50 
                 + + ++ +v  t d+  + l+ +r + ++
  EHU00316.1 194 VrELNLAVVIVTHDLGVARLLAHRLLVMK 222
                 24444445555555555555555544444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.1e-05     0.029       2      23 ..      35      56 ..      34      90 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.1e-05
                EEEEEESTTCCHHHHHHHHHCT CS
        cobW  2 vtvltGflGsGKTtLlnhllen 23
                v++++G  GsGKTtLl++l ++
  EHU00316.1 35 VLGIVGESGSGKTTLLRSLSAR 56
                7899*************99844 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.023        11      39      58 ..      37      56 ..      33      73 .. 0.83
   2 ?    6.5   0.1    0.0099       4.8     118     160 ..     164     204 ..     123     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.023
        TniB 39 llvGdsnnGKtmivekFarl 58
                 +vG+s  GKt+++++ +++
  EHU00316.1 37 GIVGESGSGKTTLLRSLSAR 56
                69***********9987755 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0099
        TniB 118 lkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 ++++++ +DE    l   ++ q ++l +l++L +el++++v+v
  EHU00316.1 164 TQPKLVFMDEPTGGL--DVSVQARLLDLLRTLVRELNLAVVIV 204
                 478899999999999..6677889*****************98 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   0.00011     0.051      49      89 ..     151     191 ..     144     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00011
     SbcCD_C  49 alaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 ++ + ++ a++  ++++lvf+DE  ++lD   +a+ll+ll+
  EHU00316.1 151 GMQQRLQIARNLVTQPKLVFMDEPTGGLDVSVQARLLDLLR 191
                 566777777667789************************98 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016     0.078      21      54 ..      38      72 ..      31      78 .. 0.85
   2 ?   -3.3   0.0       9.3   4.5e+03     122     154 ..     195     227 ..     182     235 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvvr.ldpDdl 54
                ++G +G+GK++l++ l ++l++q ++++ l++D +
  EHU00316.1 38 IVGESGSGKTTLLRSLSARLAPQAGAIHyLQRDLY 72
                789******************88888874666666 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.3
  Zeta_toxin 122 YevevvvvavkkelSrlgvldRyeeevaegRlv 154
                 +e++++vv+v   l + ++l+  +  +++gR+v
  EHU00316.1 195 RELNLAVVIVTHDLGVARLLAHRLLVMKQGRVV 227
                 456666666666666655554333333445655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00019     0.092       3      24 ..      37      58 ..      35      79 .. 0.83
   2 ?   -1.8   0.0       6.4   3.1e+03      17      33 ..     191     211 ..     154     227 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00019
                EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltgeka 24
                +ivG + +GK+tL+++l+ + a
  EHU00316.1 37 GIVGESGSGKTTLLRSLSARLA 58
                8****************98743 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.4
                 HHHHTS....TEEESSSTTSS CS
    MMR_HSR1  17 naltge....kaivsdkpgtT 33 
                 ++l++e    ++iv++  g+ 
  EHU00316.1 191 RTLVRElnlaVVIVTHDLGVA 211
                 333332222244555555554 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00013     0.062       1      24 [.      35      58 ..      35      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                v+g+ g+SG+Gktt+ r l  +++
  EHU00316.1 35 VLGIVGESGSGKTTLLRSLSARLA 58
                689****************99988 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00014     0.068      16      38 ..      36      58 ..      33      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
     Pox_A32 16 lalvGgsGsGktvyLlsLlrtlv 38
                l +vG+sGsGkt+ L+sL  +l 
  EHU00316.1 36 LGIVGESGSGKTTLLRSLSARLA 58
                569**************987765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   0.00016     0.076       3      25 ..      38      65 ..      36      86 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00016
      AAA_18  3 ltGtpGvGKttlakeLskrlgf.....g 25
                + G +G+GKttl + Ls rl+      +
  EHU00316.1 38 IVGESGSGKTTLLRSLSARLAPqagaiH 65
                8899*************99832344444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00054      0.26       4      22 ..      38      56 ..      36      86 .. 0.81
   2 ?   -2.2   0.0       8.8   4.3e+03      60      79 ..     152     172 ..     122     189 .. 0.66
   3 ?   -0.4   0.0       2.4   1.2e+03     135     157 ..     184     205 ..     152     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00054
      AAA_28  4 itGgestGKTtlleaLaar 22
                i+G +++GKTtll+ L+ar
  EHU00316.1 38 IVGESGSGKTTLLRSLSAR 56
                78999************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 8.8
      AAA_28  60 leeqleeeaaa.aankvlfcD 79 
                 ++++l+ +++  +++k++f+D
  EHU00316.1 152 MQQRLQIARNLvTQPKLVFMD 172
                 344444444446777888887 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.4
      AAA_28 135 eaiderlrealrelgipviivps 157
                 +++ ++lr ++rel+  v+iv +
  EHU00316.1 184 ARLLDLLRTLVRELNLAVVIV-T 205
                 445577888888888888888.5 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00021       0.1      26      48 ..      36      58 ..      25      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00021
       DUF87 26 lAilgsTGsGKSntvavLleell 48
                l+i+g++GsGK+++ ++L ++l+
  EHU00316.1 36 LGIVGESGSGKTTLLRSLSARLA 58
                79*****************9997 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0013      0.62       3      30 ..      38      75 ..      36     220 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0013
                EESSTTSSHHHHHHHHHHHH..........THEEEEEE CS
         AAA  3 lyGppGtGKTllakavakel..........gvefleis 30
                ++G  G GKT+l +++   l          +++++++s
  EHU00316.1 38 IVGESGSGKTTLLRSLSARLapqagaihylQRDLYQMS 75
                689*************9997443332222223333333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0029       1.4      46      72 ..      34      60 ..      24      75 .. 0.89
   2 ?    1.9   0.0      0.38   1.9e+02     121     170 ..     155     203 ..     139     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0029
       Rad17 46 riLLisGPsGCgkstvvkvLskelgik 72
                ++L i G sG gk+t ++ Ls  l+++
  EHU00316.1 34 EVLGIVGESGSGKTTLLRSLSARLAPQ 60
                6899*****************999887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.38
       Rad17 121 klqklGddlrtdkklilvedlPnkfyrds.dalrevirkylrssealplil 170
                 +lq    +l t+ kl+++++       ++  +l +++r+ +r  +  ++++
  EHU00316.1 155 RLQ-IARNLVTQPKLVFMDEPTGGLDVSVqARLLDLLRTLVRELNL-AVVI 203
                 444.567788888888888877777777766788888887776554.4444 PP

>> Propep_M14  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00026      0.13       8      67 ..     153     209 ..     151     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00026
  Propep_M14   8 eeqlelLrdLeesseldfWkppsklgepvdilVppekledfeelLeslgisyevlieDvq 67 
                 ++ l++ r+L ++++l f+++p+   +  d+ V+++ l+ ++ l+++l++ + ++ +D++
  EHU00316.1 153 QQRLQIARNLVTQPKLVFMDEPT---GGLDVSVQARLLDLLRTLVRELNLAVVIVTHDLG 209
                 6779999*************777...77*****************************996 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0043       2.1      26      47 ..      35      56 ..      21      81 .. 0.83
   2 ?    3.0   0.0      0.12        59     150     200 ..     157     209 ..     112     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0043
                EEEEEESTTSSHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAilFv 47
                +  ivG+ GSGK+ ll +++  
  EHU00316.1 35 VLGIVGESGSGKTTLLRSLSAR 56
                567*************998755 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
                 HHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
       SMC_N 150 lfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislree 200
                  +A + v +  l+++De    LD +  +++ +ll++   +    +++++++ +
  EHU00316.1 157 QIARNLVTQPKLVFMDEPTGGLDVSVQARLLDLLRTLVRElnLAVVIVTHDLG 209
                 45556666777999*********************876652256666777655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.14      22      40 ..      35      53 ..      28      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
                EEEEEESTTSSHHHHHHHH CS
      NB-ARC 22 vvalvGmgGvGKttlakqi 40
                v+++vG  G+GKttl+++ 
  EHU00316.1 35 VLGIVGESGSGKTTLLRSL 53
                89*************9876 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00031      0.15      13      67 ..      22      78 ..      20      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
     DUF2813 13 GinrLSlsleentvL..iGENaWGKSSLldALslilnvekelyqFtlkDFhvdesee 67
                G +  S  l +  vL  +GE   GK  Ll+ Ls  l++++ + ++ ++D ++ ++++
  EHU00316.1 22 GFEDVSFDLYPGEVLgiVGESGSGKTTLLRSLSARLAPQAGAIHYLQRDLYQMSESD 78
                556667777777775559********************************9765444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00042       0.2       5      22 ..      36      53 ..      33      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00042
      AAA_24  5 iliyGpsgiGKTtlakel 22
                + i+G+sg+GKTtl+++l
  EHU00316.1 36 LGIVGESGSGKTTLLRSL 53
                679************998 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00086      0.42       3      25 ..      38      60 ..      36      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00086
  RNA_helicase  3 lyGpsgeGKStlakeLakallkk 25
                  ++G+sg GK+tl ++L+++l+ +
    EHU00316.1 38 IVGESGSGKTTLLRSLSARLAPQ 60
                  78***************999854 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00058      0.28       4      21 ..      38      55 ..      36     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00058
                EESSTTSSHHHHHHCHCT CS
         Roc  4 lvGdsgvGKtsllkrfve 21
                +vG+sg+GKt+ll+++  
  EHU00316.1 38 IVGESGSGKTTLLRSLSA 55
                8************99874 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0019       0.9       9      38 ..      32      61 ..      26     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0019
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvelg 38
                + +vl +++  G+GKT++l+   a l  + 
  EHU00316.1 32 PGEVLGIVGESGSGKTTLLRSLSARLAPQA 61
                5678999************99988877655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0013      0.62       3      45 ..      34      76 ..      32      92 .. 0.77
   2 ?   -1.0   0.0       3.3   1.6e+03      55      72 ..     158     173 ..     126     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0013
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkk 45
                ++l i+G   +GKTtll+ l  +l  ++  i y++ d  + ++
  EHU00316.1 34 EVLGIVGESGSGKTTLLRSLSARLAPQAGAIHYLQRDLYQMSE 76
                688999**************98888677777777766655544 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.3
      AAA_14  55 lileklkeekktylflDE 72 
                 + ++++   + +++f+DE
  EHU00316.1 158 IARNLV--TQPKLVFMDE 173
                 333332..3678899998 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00071      0.34       9      27 ..      38      56 ..      34      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00071
                EEEBTTSSCCCCCCTTSSS CS
      Septin  9 vvGesglGkttlintlfet 27
                +vGesg Gkttl+++l ++
  EHU00316.1 38 IVGESGSGKTTLLRSLSAR 56
                8**************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 1891.63
//
Query:       EHU00317.1  [L=282]
Description: carbon-phosphorus lyase complex subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     3e-147  488.9   0.1   3.5e-147  488.7   0.1    1.0  1  PhnJ            Phosphonate metabolism protein PhnJ
  ------ inclusion threshold ------
      0.067   13.2   0.8       0.14   12.1   0.5    1.6  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon


Domain annotation for each model (and alignments):
>> PhnJ  Phosphonate metabolism protein PhnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.7   0.1  3.9e-151  3.5e-147       2     274 ..       6     277 ..       5     278 .. 0.99

  Alignments for each domain:
  == domain 1  score: 488.7 bits;  conditional E-value: 3.9e-151
        PhnJ   2 kynfafldeeakreirrailkavaiPGyqvpfasrelPlarGwGtGGlqltlsligkddvlkvidqGsddsvnavnirkliektagvettekteeatli 100
                  yn ++lde++kr+irrailkavaiPGyqvpfa+re+P+++GwGtGG+q+t+s+ig++dvlkvidqG+dd++nav+ir+++++++g +tte+t +atli
  EHU00317.1   6 GYNNGYLDEQTKRTIRRAILKAVAIPGYQVPFAGREMPMPYGWGTGGIQITASVIGDKDVLKVIDQGADDTTNAVSIRRFFQRVSGAATTERTVDATLI 104
                 5999*********************************************************************************************** PP

        PhnJ 101 qtrhriPeeklkedqilvlqvPipeplrvvepseaetkklhaeedysklwvklyedivrfgeiatsadyPvlvngryvmdpsPiPrfdvpkleqseall 199
                 qtrhriPe++l+edqil++qvPipeplr++ep+e+et+++ha e+y+ ++vklyedi+rfg+iat+++yPv+vn+ryvmdpsPiP+fd+pk+++++al+
  EHU00317.1 105 QTRHRIPETPLQEDQILIFQVPIPEPLRFIEPRETETRTMHALEEYGIMQVKLYEDIARFGHIATTYAYPVKVNDRYVMDPSPIPKFDNPKMHMMPALQ 203
                 *************************************************************************************************** PP

        PhnJ 200 lfgaGrekriyavPPytkveslafedvpfevekfeekaCalcgatesfldevieddegeklyvcsdtdyceerre 274
                 lfgaGrekriya+PPytkvesl+f+d+pf+v++++e  Calcg+++s+ldev++dd+g++++vcsdtd+c++++e
  EHU00317.1 204 LFGAGREKRIYALPPYTKVESLDFDDHPFTVQQWDE-PCALCGSRHSYLDEVVMDDQGTRMFVCSDTDFCHQQQE 277
                 ***********************************9.**********************************9987 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.86   7.7e+03      11      21 ..     112     122 ..     112     122 .. 0.87
   2 ?   12.1   0.5   1.6e-05      0.14       4      24 ..     240     268 ..     240     275 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.86
  PhnA_Zn_Ribbon  11 eytYedgallv 21 
                     e++++++++l+
      EHU00317.1 112 ETPLQEDQILI 122
                     78999999997 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.6e-05
  PhnA_Zn_Ribbon   4 kCplCaSeytY........edgallvCpe 24 
                     +C lC+S ++Y        +++ ++vC++
      EHU00317.1 240 PCALCGSRHSYldevvmddQGTRMFVCSD 268
                     6**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2160.20
//
Query:       EHU00318.1  [L=358]
Description: carbon-phosphorus lyase complex subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-155  516.8   0.0   2.6e-155  516.6   0.0    1.0  1  PhnI      Bacterial phosphonate metabolism protein (PhnI)
      8e-07   29.1   0.0    1.4e-06   28.3   0.0    1.4  1  PhnG      Phosphonate metabolism protein PhnG


Domain annotation for each model (and alignments):
>> PhnI  Bacterial phosphonate metabolism protein (PhnI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  516.6   0.0  2.9e-159  2.6e-155       1     352 [.       1     351 [.       1     352 [. 0.98

  Alignments for each domain:
  == domain 1  score: 516.6 bits;  conditional E-value: 2.9e-159
        PhnI   1 gYvavkggekaieealklleeerrkdesveelsveqieeqlrllvdrvmsegslYdpelaalAikqaeGdlleavfllRayrstlpRlgeskpvdteem 99 
                 +Yvavkggekai++a++l ++ rr+d++v+els++q+++ql l+vdrvm+eg++Ydp laalAikqa+Gdl+ea+fllRayr+tlpRl++s+p+ t +m
  EHU00318.1   1 MYVAVKGGEKAIANAHHLQADVRRGDRAVPELSCDQVAQQLGLAVDRVMTEGGIYDPALAALAIKQASGDLVEAIFLLRAYRTTLPRLAQSTPLATGSM 99 
                 8************************************************************************************************** PP

        PhnI 100 rveRRiSaafKdipGGqvLGptlDYthrLldfelaeeekeelkevelaeeaeeklprvldlLreeglleeeeeeeeeepkDitreplefPasRsarLqa 198
                 r+eRRiSa +Kd+pGGqvLGpt+DY+hrLldf+l +++++     + +++ +e++p+++++++eeg+  e+e+++ +ep+Ditrep+ fPasR+arLq+
  EHU00318.1 100 RIERRISAVYKDLPGGQVLGPTYDYSHRLLDFTLIANGETP-PPPRSEQALPEHCPHMFSMMSEEGFA-EAEHDDGSEPTDITREPMGFPASRAARLQQ 196
                 *************************************9444.3446777889***************9.66799************************* PP

        PhnI 199 laRgdegallalaYstlRgygevHptvgelrvGeveveleapelgeaveigeievtecevvnqfegseeeepqftlGyglvfGqnerkaiamallDral 297
                 l Rgdeg+ll+l+Yst+Rgyg++Hp++ge+r+G+v+v++ ++elg+++eige+ +tece+vn f+++ e++p+ft+GyglvfG++erka++mal+Dral
  EHU00318.1 197 LVRGDEGFLLSLGYSTQRGYGRTHPFAGEIRTGYVSVSICPEELGFELEIGEMLLTECEMVNGFTHDGESAPHFTRGYGLVFGRAERKAMSMALVDRAL 295
                 *************************************************************************************************** PP

        PhnI 298 raeelgee.eapaqdeefvlshvDnveatGfveHlKlPHYvtFqselelvrklrke 352
                 +++e +e+ ++paqdeefvlsh+Dnvea+Gfv+HlKlPHYv+Fq+elel+++lr++
  EHU00318.1 296 QTREHHERiTSPAQDEEFVLSHADNVEAAGFVSHLKLPHYVDFQAELELLKRLRQD 351
                 *****************************************************985 PP

>> PhnG  Phosphonate metabolism protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.6e-10   1.4e-06      55     107 ..     244     305 ..     216     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.6e-10
                 EEEEEEEEEEEEEEE...T......TS-EEEEEEESS-HHHHHHHHHHHHHCTSHHHHHHHH CS
        PhnG  55 FnlGEvtvtraavrl...e......dgtvGvayvlgrdkrkAelaAllDAllqtpereeele 107
                   +GE+ +t++ +     +      + t G+++v gr +rkA  +Al+D +lqt+e++e+++
  EHU00318.1 244 LEIGEMLLTECEMVNgftHdgesapHFTRGYGLVFGRAERKAMSMALVDRALQTREHHERIT 305
                 568********99884442333333445******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2808.50
//
Query:       EHU00319.1  [L=194]
Description: PhnH family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-61  206.0   0.6    4.8e-61  205.8   0.6    1.0  1  PhnH      Bacterial phosphonate metabolism protein (PhnH)


Domain annotation for each model (and alignments):
>> PhnH  Bacterial phosphonate metabolism protein (PhnH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.6   2.7e-65   4.8e-61       2     189 .]       6     189 ..       5     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 205.8 bits;  conditional E-value: 2.7e-65
        PhnH   2 gfadpvhdaqrvFralLdAlarPGrvvaleaaaepaplspaaaavlltLlDqetplwlaaalakeeevaawlrfhtgaplveeeeeAdFalvddeaalp 100
                  f++pv daq++Fr++L+A+++PG +v+l+ ++ +  lspaa+avlltL+Dqe plwl+++++ +++++++lrfhtgap++++++ A+Fal +++a+ +
  EHU00319.1   6 SFHHPVADAQHAFRRILKAMSEPGVMVSLPLQQGWGALSPAATAVLLTLVDQESPLWLDPQVD-NQTLRDNLRFHTGAPITDSSD-AAFALSHATAQPN 102
                 699***************************9966****************************9.******************999.*****99986655 PP

        PhnH 101 alekfalGtlesPersaTlivevasleegealrlsGPGIkeertlaveglpadflearaanaaefPlGvDllLvdgeevvaLPRttkve 189
                 + ++f+ G++ +Pe+s+Tli+ev++l+ g alrl+GPG++e r++a++ lp++++++++a+ + fP+GvDl++++ge+++a+PRtt+ve
  EHU00319.1 103 P-ADFSAGDNLAPEKSTTLIIEVPALNVGLALRLTGPGLREARAIAPQ-LPESVIDYLRARPHPFPQGVDLIFTCGEAMMAVPRTTHVE 189
                 5.**********************************************.**************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1433.20
//
Query:       EHU00320.1  [L=149]
Description: carbon-phosphorus lyase complex subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-53  180.9   0.8    1.3e-53  180.7   0.8    1.0  1  PhnG      Phosphonate metabolism protein PhnG


Domain annotation for each model (and alignments):
>> PhnG  Phosphonate metabolism protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.8   7.5e-58   1.3e-53       2     142 .]       6     146 ..       5     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 7.5e-58
                 HHHHHHHHHHHS-HHHHHHHHHHH-----EEEEEEEEEEEEEEEEEGGGTSSEEEEEEEEEEEEEEEETTS-EEEEEEESS-HHHHHHHHHHHHHCTSH CS
        PhnG   2 aRqewlavLakapaeelealleelalapevellraPetglvmvrgraggtgepFnlGEvtvtraavrledgtvGvayvlgrdkrkAelaAllDAllqtp 100
                 aRq+wl+vLa+++a+el+al++ l+l+p+++l+r++e+gl+ +++r+g+tg++F++G++tvtra+vrl+dgt+G++y+lgrdk++Ae +Al+DAllq+ 
  EHU00320.1   6 ARQHWLSVLAHSSAAELDALWQPLNLTPAFTLIRPAEIGLTRLQARMGATGKRFVMGDATVTRAVVRLNDGTLGYSYLLGRDKAHAERCALMDALLQQT 104
                 7************************************************************************************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGEE--EEEXXX CS
        PhnG 101 ereeeleaelieplearlaeeraaraaelaaTkVdFftlvRG 142
                  ++e l++++i+pl+a ++e+r+ ra+e+a++kVdFftlvRG
  EHU00320.1 105 GTAELLQEKIITPLAALRDEQRQLRAREIASSKVDFFTLVRG 146
                 *****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1202.96
//
Query:       EHU00321.1  [L=238]
Description: putative phosphonate uptake/biodegradation DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-31  108.3   0.0    3.8e-31  107.8   0.0    1.2  1  UTRA       UTRA domain
    1.1e-18   66.6   0.3    2.7e-18   65.4   0.3    1.7  1  GntR       Bacterial regulatory proteins, gntR family
    0.00016   21.5   0.2    0.00051   20.0   0.1    2.0  2  HTH_Crp_2  Crp-like helix-turn-helix domain
    0.00018   21.2   0.1    0.00066   19.4   0.1    1.9  1  HTH_DeoR   DeoR-like helix-turn-helix domain
     0.0013   19.0   0.0     0.0033   17.7   0.0    1.7  1  Rrf2       Transcriptional regulator
     0.0017   18.2   0.0     0.0033   17.3   0.0    1.5  1  MarR       MarR family
     0.0068   16.3   0.0      0.015   15.2   0.0    1.6  1  HTH_36     Helix-turn-helix domain
     0.0099   15.7   0.1      0.052   13.4   0.0    2.2  2  MarR_2     MarR family
  ------ inclusion threshold ------
      0.038   13.8   1.3        1.5    8.7   0.0    3.5  4  HTH_23     Homeodomain-like domain
      0.058   13.3   0.0       0.25   11.3   0.0    2.0  2  HTH_11     HTH domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0   2.1e-34   3.8e-31       1     140 [.      93     231 ..      93     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 2.1e-34
                 CCCCSEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--H CS
        UTRA   1 aqglepktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearlada 99 
                 +qg +p++e l +  +pas ++a+aLg+++g++v+++++lr+++g pv+l  ++lp      ++ + +++gsl+++l++++g +++r++++i+ r a+a
  EHU00321.1  93 EQGSDPTSERLLAVLRPASTDVAAALGVNEGDNVIHLRTLRRVNGLPVCLINHFLPDLSW-WPQLQRFTSGSLHDFLRQHTGKQLVRTQTRISTRRAQA 190
                 5999**********************************************9999987766.999999******************************** PP

                 HHHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 100 eeaelLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                 +e++ L+i+ +sp+L++++++ + dg   eys+s+ rgd +
  EHU00321.1 191 KECKQLEIALHSPLLCVRTLNKTTDGAMAEYSVSLTRGDMI 231
                 **************************************975 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.3   1.5e-21   2.7e-18       2      64 .]      11      72 ..      10      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.5e-21
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y++v+++L++ + + ++r Gd LPse++La+ ++V+r+t+R+A ++L+ +gl++rr+g+G+ V
  EHU00321.1 11 YQAVAAQLEQAVQE-RYRSGDYLPSEQQLADHYAVNRHTLRRAVDELVNKGLLQRRHGVGILV 72
                899********999.*********************************************988 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.9e-07   0.00051      22      60 ..      33      73 ..      12      77 .. 0.73
   2 ?   -2.6   0.0       3.1   5.6e+03      19      33 ..     106     120 ..      89     122 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.9e-07
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEE..EEES CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisrgrr..iril 60
                 + ++lA++  ++r t+ r+  eL ++gl++r+++  i +l
  EHU00321.1 33 PSEQQLADHYAVNRHTLRRAVDELVNKGLLQRRHGvgILVL 73
                589****************************7754346555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.1
                 EEEHHHHHHHHHTTS CS
   HTH_Crp_2  19 elpltqeelAsmlGl 33 
                  l+   ++ A+ lG+
  EHU00321.1 106 VLRPASTDVAAALGV 120
                 366667788888886 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   3.7e-07   0.00066      18      49 ..      36      67 ..      33      72 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.7e-07
    HTH_DeoR 18 eelvellgvSeaTiRRDLneLeeqglltRthG 49
                ++l++++ v   T RR  +eL+++gll R hG
  EHU00321.1 36 QQLADHYAVNRHTLRRAVDELVNKGLLQRRHG 67
                79*****************************9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.9e-06    0.0033      26      70 ..      33      76 ..       8      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.9e-06
                B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSH CS
        Rrf2 26 vsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakp 70
                 s +++a+++ ++++ l++ + +L ++gl++ + G+ G ++L++p
  EHU00321.1 33 PSEQQLADHYAVNRHTLRRAVDELVNKGLLQRRHGV-GILVLMRP 76
                56689******************************9.77777776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.9e-06    0.0033      19      51 ..      34      66 ..      26      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 19 svseLakklgvskstvtrvldrLekkGlieRsk 51
                s ++La++  v++ t+ r++d+L+ kGl++R++
  EHU00321.1 34 SEQQLADHYAVNRHTLRRAVDELVNKGLLQRRH 66
                679****************************97 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.4e-06     0.015      25      55 .]      32      62 ..      25      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.4e-06
      HTH_36 25 fpsqetlakrlglsknTvsraikeLeqlGyi 55
                 ps + la ++++++ T +ra++eL+ +G++
  EHU00321.1 32 LPSEQQLADHYAVNRHTLRRAVDELVNKGLL 62
                588999***********************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.9e-05     0.052      25      55 ..      36      66 ..      26      69 .. 0.91
   2 ?   -1.4   0.0       1.3   2.3e+03       6      33 ..     110     120 ..      96     135 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrp 55
                ++la++  + ++++ r++++Lv +GL++rr 
  EHU00321.1 36 QQLADHYAVNRHTLRRAVDELVNKGLLQRRH 66
                68999999********************995 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
                 HHHHHHHHHHCTTTSEEEHHHHHHHHTS CS
      MarR_2   6 aqarvLaaLgrrpgrdltvgelarrlgl 33 
                 a                  +++a++lg+
  EHU00321.1 110 AS-----------------TDVAAALGV 120
                 33.................344444443 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.27   4.9e+02      27      40 ..       3      16 ..       2      26 .. 0.82
   2 ?    8.7   0.0   0.00085       1.5      21      46 ..      36      61 ..      34      64 .. 0.87
   3 ?    0.3   0.0      0.36   6.5e+02      21      30 ..     112     121 ..      99     123 .. 0.76
   4 ?   -3.3   0.1       4.8   8.6e+03      29      37 ..     127     135 ..     127     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
      HTH_23 27 LgvsrrTvyrwlkr 40
                L +++ Tvy+ + +
  EHU00321.1  3 LSRHPTTVYQAVAA 16
                7899*****98876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00085
      HTH_23 21 reIAreLgvsrrTvyrwlkryreeGl 46
                ++ A+++ v+r+T++r +   +++Gl
  EHU00321.1 36 QQLADHYAVNRHTLRRAVDELVNKGL 61
                789**************998877875 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.36
      HTH_23  21 reIAreLgvs 30 
                 +++A++Lgv+
  EHU00321.1 112 TDVAAALGVN 121
                 6899999997 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 4.8
      HTH_23  29 vsrrTvyrw 37 
                 ++ rT++r+
  EHU00321.1 127 IHLRTLRRV 135
                 688999985 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.5   2.6e+03      24      37 ..       2      15 ..       2      16 .. 0.82
   2 ?   11.3   0.0   0.00014      0.25      16      43 ..      33      60 ..      17      70 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.5
      HTH_11 24 eLnvSrrtvrrdIk 37
                eL++  +tv++ ++
  EHU00321.1  2 ELSRHPTTVYQAVA 15
                5788899***9987 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
      HTH_11 16 isgeeLAeeLnvSrrtvrrdIkaLeelg 43
                 s ++LA++  v r t rr +++L  +g
  EHU00321.1 33 PSEQQLADHYAVNRHTLRRAVDELVNKG 60
                46689******************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1646.83
//
Query:       EHU00322.1  [L=280]
Description: short-chain alcohol dehydrogenase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-50  171.1   0.0    2.6e-50  170.6   0.0    1.2  1  adh_short       short chain dehydrogenase
    1.5e-39  135.9   0.2    1.9e-39  135.6   0.2    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    3.1e-12   46.8   0.0    4.4e-12   46.3   0.0    1.2  1  KR              KR domain
    4.5e-06   26.7   3.9    8.1e-06   25.8   1.5    2.0  2  NAD_binding_10  NAD(P)H-binding
     0.0023   17.4   0.4     0.0093   15.5   0.4    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
      0.008   15.3   0.1      0.014   14.5   0.1    1.3  1  RmlD_sub_bind   RmlD substrate binding domain
  ------ inclusion threshold ------
      0.042   13.7   0.1      0.068   13.0   0.1    1.4  1  DFP             DNA / pantothenate metabolism flavoprotein
      0.074   13.2   0.0       0.13   12.4   0.0    1.5  1  MTES_1575       REase_MTES_1575


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.0   1.2e-53   2.6e-50       3     189 ..       9     191 ..       7     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 1.2e-53
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                  l+ G+s G+Gr++a++ +++G++vvv++r+ ++++ +++   +    a+a+++Dvt++++++++v+ka + +g+ldvLvnNAG   +++++e +++++
  EHU00322.1   9 WLISGCSTGFGRELAQQTIARGFRVVVTARHRSAIADLVDGHPN----AIAVELDVTQQHSIDKAVNKALETFGTLDVLVNNAGYGYQSSVEEGEDKAI 103
                 5899*****************************99999999887....9************************************************** PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 ++ ++ N++g+f ltravlpam  +++G+I n++Svag+ ++a+   Y+AsK+av+g+++s+a+e+ p gi v+++ PG+++Td a +
  EHU00322.1 104 RAQFDANVFGLFALTRAVLPAMRTARRGHIMNITSVAGFIGFASSGYYAASKHAVEGWSDSFAQEVGPLGIHVTCIEPGPFRTDWAGR 191
                 ***********************************************************************************98765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.2   8.7e-43   1.9e-39       1     197 [.      13     208 ..      13     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 8.7e-43
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   G   g Gr++A++  ++G +vv+t ++++a   +++l++ +++++ +e+DVt++ +++++v+++ e+fg+lD+lvnnag+  +  ++++e +++ ++
    EHU00322.1  13 GCSTGFGRELAQQTIARGFRVVVTARHRSA---IADLVDGHPNAIaVELDVTQQHSIDKAVNKALETFGTLDVLVNNAGYGYQ--SSVEEGEDKAIR 104
                   66789**********************999...*******999955*************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfdelle 190
                     +d n+ +lf+l++a+lp+m+    g i+n++sv++ +++++   y+a+K+a+e+ + ++A e+gp gi v ++ pgp +T+   ++++++++ l 
    EHU00322.1 105 AQFDANVFGLFALTRAVLPAMRTArrGHIMNITSVAGFIGFASSGYYAASKHAVEGWSDSFAQEVGPLGIHVTCIEPGPFRTDWaGRSLHQTPSTLP 201
                   *******************8887668********************************************************984566666666666 PP

                   HHHHHST CS
  adh_short_C2 191 elearap 197
                     ++ a 
    EHU00322.1 202 DYAETAA 208
                   6665555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     2e-15   4.4e-12       3     178 ..       9     184 ..       7     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2e-15
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  li G+  g+G+ela++ +++g r +v+++R+       ++ ia l +   +  +v++Dv++++++ ++++++ ++++++   ++ Ag   ++ +ee +
  EHU00322.1   9 WLISGCSTGFGRELAQQTIARGFR-VVVTARH-------RSAIADLVDGHPNAIAVELDVTQQHSIDKAVNKALETFGTLDVLVNNAGYGYQSSVEEGE 99 
                 79********************87.6678888.......467999999999************************************************ PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH....HHHHHHHHHHHHHHTEEEEEE--B CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa....flDalaeyrrsqglpavsinwglw 178
                 ++++++ + + v G+  L +++ +     +  +++ ++S+ag++g a  + Yaa  +    + D++a++   +g ++++i+ g++
  EHU00322.1 100 DKAIRAQFDANVFGLFALTRAVLPamrtARRGHIMNITSVAGFIGFASSGYYAASKHavegWSDSFAQEVGPLGIHVTCIEPGPF 184
                 *******************998776766788899******************997652222678999999999999999987765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.5   3.6e-09   8.1e-06       5      98 ..      17     138 ..      13     192 .. 0.78
   2 ?    1.2   0.0      0.13     3e+02      55     108 ..     207     258 ..     195     275 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.6e-09
                     HHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH.CTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC....HHHH.......... CS
  NAD_binding_10   5 kvGrllvkellargghevtalvRnpeklaele.aeeglevvegdvtdvedlaealk.......gadaVvsalggggk....deeg.......... 77 
                     + Gr+l+++ +ar g++v++ +R+ + +a+l   ++++ +ve+dvt++ ++ +a++         d+ v ++g g +    +  g          
      EHU00322.1  17 GFGRELAQQTIAR-GFRVVVTARHRSAIADLVdGHPNAIAVELDVTQQHSIDKAVNkaletfgTLDVLVNNAGYGYQssveE--Gedkairaqfd 108
                     67***********.5**************987478********************944444433367666664444444330..23333466667 PP

                     .........HHHHHHHHHHCT--EEEEEEE CS
  NAD_binding_10  78 .........aknivdaakeagvkRfvlvsa 98 
                              +++++ a+++a   ++  +++
      EHU00322.1 109 anvfglfalTRAVLPAMRTARRGHIMNITS 138
                     777888888999999998888777777666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
                     HHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEEEEETTTTSGCGCH CS
  NAD_binding_10  55 aealkgadaVvsalggggkdeegaknivdaakeagvkRfvlvsaigvgdevpge 108
                     a+a   a a +s + +g+   ++a ++++ a+  +  R v+++a g +  v ++
      EHU00322.1 207 AAARMKATAAYSGTQKGD-PVRAASAMIAIAEHPDPPRHVVMGAWGYEA-VTEK 258
                     444455555555555444.357799999999999999999999999884.3333 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   4.1e-06    0.0093       2     238 ..      10     245 ..       9     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.1e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S---HHHHHHSHHHHHHHHTH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfk....ee.qpdavihlAavggvaassedpadfieknlq 93 
                 l+ G +   G+ l+++  ++g +v++ +r +sa +   + +     veld+t++ +++++++    ++   d+ ++ A++g  +           +  +
  EHU00322.1  10 LISGCSTGFGRELAQQTIARGFRVVVTARHRSAIADLVDGHPnaIAVELDVTQQHSIDKAVNkaleTFgTLDVLVNNAGYGY-QS----------SVEE 97 
                 777888888**************99999998888877777668999*******99666666600004444444444444322.22..........2334 PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS.....S.SBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT...-EEEEEEESEEESTT..S-TTS CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdae.....q.pkeettltgplkpnspYaaaKlageklveayaaqyg...lnaiilrlfnlyGpr..ngege 181
                 g  + + a ++a+v   lf+ + +v +++ +     +   ++++    ++++  Yaa+K+a+e    ++a++ g   ++++++ +         +  ++
  EHU00322.1  98 GEDKAIRAQFDANV-FGLFALTRAVLPAMRTarrghImNITSVAGFIGFASSGYYAASKHAVEGWSDSFAQEVGplgIHVTCIEPGPFRTDWagRSLHQ 195
                 66667777777777.66777777777755554333221378888777889****************999999975556777666643333323333445 PP

                 TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEE CS
   Epimerase 182 vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiy 238
                   + +p +++ ++++  + t   +gt++ d +    +a a+++++eh    d+++++
  EHU00322.1 196 TPSTLPDYAETAAARM-KATAAYSGTQKGDPVR---AASAMIAIAEH---PDPPRHV 245
                 6677777777777777.6666667777665554...46667777777...3335555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   6.2e-06     0.014       3      81 ..       9     109 ..       8     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.2e-06
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.................T--TTSHHHHHHHHHHH.....--SEEEE------HHHHHHSHHHHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre.................eldltdaeavaellkea.....kpdvvvnaAAytavDkaEseeeaaya 76 
                    +l+ G +   G+eLa+q  ++g+ v+ + r+                 eld+t+++++++++++a       dv+vn A y     +E+ e++a +
     EHU00322.1   9 WLISGCSTGFGRELAQQTIARGFRVVVTARHrsaiadlvdghpnaiavELDVTQQHSIDKAVNKAletfgTLDVLVNNAGYGYQSSVEEGEDKAIR 104
                    5889999999******************99999************************9999977622222467********************999 PP

                    HHTHH CS
  RmlD_sub_bind  77 vnaea 81 
                    ++ +a
     EHU00322.1 105 AQFDA 109
                    98776 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.1e-05     0.068      19      93 ..       7      90 ..       3     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.1e-05
                TTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S.-SS--.....-TT-.EEEE--SHHHHHHHHHHHHTT-...SEEEE---S- CS
         DFP 19 pVRfisNrSSGkmGyalAeaaaarGaeVtlvsgp.vslet.....pegv.evvkvesaeemleaveealkea...divimaAAva 93
                pV +is  S+G  G +lA++ +arG +V + + + +++++     p+++   ++v++ +++ +av++al++    d+++  A   
  EHU00322.1  7 PVWLISGCSTG-FGRELAQQTIARGFRVVVTARHrSAIADlvdghPNAIaVELDVTQQHSIDKAVNKALETFgtlDVLVNNAGYG 90
                88899999**9.7***************999888335554455656666246789999999999999986555569999988655 PP

>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05      0.13       1      60 [.      18      75 ..      18      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
   MTES_1575  1 FeeeVaeaLrergykvkpqvgvggfriDlvvedpgkyllaIecdgdkyhsskeardrdie 60
                F +e+a++ ++rg++v+   +  +   Dlv  +p  + +a+e d  + hs ++a+++ +e
  EHU00322.1 18 FGRELAQQTIARGFRVVVTARHRSAIADLVDGHP--NAIAVELDVTQQHSIDKAVNKALE 75
                778999999********************99999..9*************9998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2171.37
//
Query:       EHU00323.1  [L=593]
Description: thiamine pyrophosphate protein TPP binding domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-43  147.7   3.7    7.1e-43  146.2   0.3    2.6  3  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.6e-30  105.2   0.0    6.6e-30  103.9   0.0    1.7  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    2.8e-28   98.4   0.1    6.7e-28   97.1   0.0    1.7  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0014   18.4   1.4     0.0024   17.7   1.4    1.3  1  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.3   1.6e-46   7.1e-43       2     170 ..       4     174 ..       3     176 .. 0.97
   2 ?   -2.9   0.0      0.98   4.4e+03      61     105 ..     432     450 ..     418     476 .. 0.58
   3 ?    1.8   0.0     0.036   1.6e+02     137     162 ..     524     548 ..     516     556 .. 0.83

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 1.6e-46
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.....TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeq....girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPll 94 
                   ++++ +v++Lka+gv++++ +pG++i+ +l a+++++    gi+++++rhE+ aaf+A g+a++tg++gv+l t gpGat++lt+l++Ak d+ P+l
    EHU00323.1   4 KTSDFFVQRLKAWGVTRIYDYPGDGINGVLGAIQRANeqgdGIEFIQVRHEEMAAFMAAGHAKFTGELGVCLSTGGPGATHLLTGLYDAKMDHAPVL 100
                   57899*****************************99999********************************************************** PP

                   EEEEE--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEEH CS
  TPP_enzyme_N  95 vlsgdrptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevde 170
                   +++g+++++ rg  ++q e++   +f +v++++++ + p++++++++r +r+a  +++g++++ +pkd+++e+ ++
    EHU00323.1 101 AIAGQAEATARGASYQQ-EMNLDRIFSDVANFVQEASAPAQVRHLIDRGVRIA-IAQNGVAVVIVPKDIQDEAWQA 174
                   ************77777.***********************************.*****************98776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.98
                   HH.TS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCH CS
  TPP_enzyme_N  61 at.gkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslr 105
                   a+ +                            P++ l+gd + ++ 
    EHU00323.1 432 AHpH---------------------------KPVVTLVGDGAMQMN 450
                   3333...........................444444444444444 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.036
                   HHHHHHHHHHHHSSS--EEEEEEEHH CS
  TPP_enzyme_N 137 pealrrAirtalsgrpgPvylelpkd 162
                   p al+ A++ al +  +Pv+le+  d
    EHU00323.1 524 PDALAGAWQRAL-SADRPVLLEVKTD 548
                   789999*****5.5556******987 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   1.5e-33   6.6e-30       1     153 []     390     545 ..     390     545 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 1.5e-33
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHT.GGGHHHHHHT.....T-SEEEEEEE-SBCCCHHHH CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmi.lqelatavrr.....nlpitvvvlnNegygmtggq 91 
                   d G++  w+ar ++vk+ ++   sggl++mG ++p+Ai+ak+a+p+++vv +vGDG+++m+ + el+t+ ++     +  ++v+v+nN+ ++ + ++
    EHU00323.1 390 DSGSCANWFARDYRVKQGQRASLSGGLACMGAAVPYAIAAKFAHPHKPVVTLVGDGAMQMNnMAELITIQKYwqqwaDPRLIVCVFNNQDLNQVTWE 486
                   789***************9*999************************************************988886779***************** PP

                   HHHHTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  92 qepfggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   q+ + g+ +++ + ++l++v++a++ae+lG +g++v+++  + l+ a ++al+ ++p+l+ev
    EHU00323.1 487 QRVMEGNPRFEAT-QQLPNVNYAEFAESLGLTGIYVDNP--DALAGAWQRALSADRPVLLEV 545
                   9988887777755.58*******************9999..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   1.5e-31   6.7e-28       1     137 []     200     330 ..     200     330 .. 0.94
   2 ?   -3.8   0.0       2.2   9.8e+03      12      31 ..     436     455 ..     428     460 .. 0.64

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 1.5e-31
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   +++aae l++ k+++il+G+g++  +a+ e+++ a+ lg+ v+  l gk+v+p+d p+  g +gl+g+ +  e+++++D++l++G+ f ++     +
    EHU00323.1 200 LQRAAEVLNSGKKVAILIGSGAR--DAAIEVVKAANLLGAGVAKALLGKDVLPDDAPFVTGAIGLLGTGPSWEMMQHCDTLLMIGSGFPWTE----F 290
                   589********************..***************************************************************9932....2 PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketleaL 137
                    +   +a+ ++ididpa +g +y+ ++ + gd++etl+aL
    EHU00323.1 291 LPKEGQARAVQIDIDPAMLGLRYPCEVNLHGDAAETLRAL 330
                   233445699*****************************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.2
                   SSEEEEE-CHHCHTTGHHHH CS
  TPP_enzyme_M  12 krpvilvGggvarsgaseel 31 
                   k +v lvG g+ + +  +el
    EHU00323.1 436 KPVVTLVGDGAMQMNNMAEL 455
                   44466788887776666666 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.4   5.3e-07    0.0024      28     108 ..      38     118 ..      31     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.3e-07
                 HCCCCCTTEE.EEEE-S.SHHHHHHHHHHHHCTT-EEEE.EEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEEEE- CS
       POR_N  28 ellakgevgdvevvqme.sEigaisaviGAaaaGaraaT.aTSgqGllLmienlglaageelPvvivvvaRalpstglsirtd 108
                 ++ ++g+   +e++q+  +E++a++a+ +A ++G +++   T g+G       l+ a ++++Pv+ +  +    + g s++++
  EHU00323.1  38 RANEQGD--GIEFIQVRhEEMAAFMAAGHAKFTGELGVClSTGGPGATHLLTGLYDAKMDHAPVLAIAGQAEATARGASYQQE 118
                 4455666..499**9963789***************98636899*********************999998888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4232.59
//
Query:       EHU00324.1  [L=171]
Description: AsnC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-18   66.4   0.1    1.8e-18   65.8   0.1    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    2.3e-18   65.9   0.1    3.4e-18   65.4   0.1    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
      1e-16   60.5   0.1    1.5e-16   60.0   0.1    1.2  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00026   20.8   0.0    0.00051   19.9   0.0    1.4  1  MarR            MarR family
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.016   15.1   0.0    1.4  1  MarR_2          MarR family
      0.029   14.4   0.0       0.05   13.7   0.0    1.4  1  HTH_20          Helix-turn-helix domain
      0.069   12.7   0.0        0.3   10.7   0.0    2.0  2  HTH_CodY        CodY helix-turn-helix domain
      0.097   12.8   0.0        1.3    9.2   0.0    2.4  1  HemN_C          HemN C-terminal domain
        0.1   12.6   0.0       0.19   11.7   0.0    1.5  1  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.15   12.4   0.0       0.28   11.6   0.0    1.4  1  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.1   9.9e-22   1.8e-18       1      48 []       7      54 ..       7      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 9.9e-22
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld++d++IL  Lqk++ris+  LA+++glSps++++r+krLe++G+I+
  EHU00324.1  7 LDRIDINILVQLQKDGRISNVNLADAVGLSPSPCLQRVKRLEQAGFIT 54
                79********************************************96 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.1   1.9e-21   3.4e-18       2      74 ..      74     146 ..      73     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.9e-21
                     EEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   2 lvslepgh.peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     +v+l+ gh +e++ +fe+a+++++e +ec+ +tG ydyll+  +r++e++++++++ l++  g+ ++ ++iv++
      EHU00324.1  74 EVTLN-GHrREDFMRFEAAMRDVDELMECHLITGGYDYLLRFITRSIEHYQDVIEKMLDAQIGIDKYFSYIVIK 146
                     799**.555***************************************************************98 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.1   8.2e-20   1.5e-16       1      42 []       7      48 ..       7      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 8.2e-20
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+iD+ IL  Lq+d+Ris+  LA++vGlS+s++l+Rv+rLe
     EHU00324.1  7 LDRIDINILVQLQKDGRISNVNLADAVGLSPSPCLQRVKRLE 48
                   8****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.8e-07   0.00051       7      48 ..      13      54 ..       9      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.8e-07
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                 iL++l   g +s+  La+++g+s+s     ++rLe++G+i+
  EHU00324.1 13 NILVQLQKDGRISNVNLADAVGLSPSPCLQRVKRLEQAGFIT 54
                69***************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     9e-06     0.016      10      52 ..      14      54 ..       6      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9e-06
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                +L  L   ++  ++   la++ gls+s   +++krL++aG+++
  EHU00324.1 14 ILVQLQKDGR--ISNVNLADAVGLSPSPCLQRVKRLEQAGFIT 54
                5555555554..77778************************95 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05      0.05      29      56 ..      28      55 ..      12      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                HHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 29 elaerldlskntlsyHLrvLeeagLvev 56
                 la++++ls++ + ++++ Le+ag++++
  EHU00324.1 28 NLADAVGLSPSPCLQRVKRLEQAGFITG 55
                69************************96 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017       0.3       2      34 ..      21      53 ..      20      59 .. 0.94
   2 ?   -1.4   0.0      0.97   1.7e+03       8      26 ..      63      81 ..      56      83 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
    HTH_CodY  2 eGrLtaskiaDriGitrsvivnaLrkLesaGii 34
                +Gr+   ++aD +G+  s     +++Le aG i
  EHU00324.1 21 DGRISNVNLADAVGLSPSPCLQRVKRLEQAGFI 53
                7999999************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.97
    HTH_CodY  8 skiaDriGitrsvivnaLr 26
                 ki D + +   v  n  r
  EHU00324.1 63 TKITDSVTVFTEVTLNGHR 81
                6788888888888777665 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00071       1.3      13      61 ..       2      63 ..       1      64 [. 0.59

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00071
      HemN_C 13 lgLRlreGldlaafeqrfgld..............leellaaaleklqeqGLLeldggrlrlt 61
                +gL++ + +d+  + q+                   ++   + +++l+++G+++  + ++ lt
  EHU00324.1  2 NGLMKLDRIDINILVQLQKDGrisnvnladavglsPSPC-LQRVKRLEQAGFITGYEAHVNLT 63
                555555555555555533332555555555555226666.555********998777777766 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.19      21      54 ..      23      57 ..       4      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis.rg 54
                ++++  lA+ +Gl+++ + +  ++L+++g i+  +
  EHU00324.1 23 RISNVNLADAVGLSPSPCLQRVKRLEQAGFITgYE 57
                78999**************************9433 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.28      18      57 ..      16      55 ..       8      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
                HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2 18 akeeeeepvsseeiaerqnispsylekilakLrkaglvks 57
                 + ++++ +s  ++a+ +++sps + + +++L++ag+++ 
  EHU00324.1 16 VQLQKDGRISNVNLADAVGLSPSPCLQRVKRLEQAGFITG 55
                3334444499***************************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1308.66
//
Query:       EHU00325.1  [L=437]
Description: gamma-aminobutyrate:alpha-ketoglutarate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-127  425.7   0.0   1.7e-127  425.4   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    0.00047   19.4   0.0     0.0066   15.7   0.0    2.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.4   0.0  1.9e-131  1.7e-127      10     405 ..      34     429 ..      26     430 .. 0.96

  Alignments for each domain:
  == domain 1  score: 425.4 bits;  conditional E-value: 1.9e-131
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S..EEEEESSHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld..kvflansGseAvetAlK 105
                  +lvi++a+G+ ++dv+g+rylD+v++i v+n+Gh+hP+vv+av  q+  +sh +f+++++  +++la+ l+kl++++ d  k ++++sG+eAve+A+K
   EHU00325.1  34 PLVIERAKGSEVWDVEGNRYLDFVGGIGVLNVGHNHPAVVNAVTRQLGLVSHACFQVVAYPGYIELAQRLNKLVGGE-DhyKSVFFTSGAEAVENAVK 130
                  499***********************************************************************983.247***************** PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH..CHTCCCEEEEEE-SC CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale..kkkkdevaAvivEpi 201
                  +ar+      +t+++ iiaf+gafHGrtl+ + +tg +++yk++fg+f+ +v+rl++p + +      +ea +l++le+l   +   + vaA+i+Ep+
   EHU00325.1 131 IARA------YTQRSGIIAFDGAFHGRTLLGVTLTGMSAPYKQNFGSFPSDVYRLPFPNPLHG----VTEADCLKALEQLFavQILPERVAAIIIEPV 218
                  ****......9***********************************************97775....5667899999999988999************ PP

                  ETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHH CS
  Aminotran_3 202 qgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplaca 299
                  qg+gG+ +a p+f+++lr ++++h+++li DE+q+GfGrTG++fA +++g++pDl+t+aK+l+gGlp+s v+++ae+m+  apg+ g+T+gGn laca
   EHU00325.1 219 QGDGGFLPAGPAFMQALRRITTQHGIVLICDEIQSGFGRTGTMFAFQQLGIKPDLVTTAKSLAGGLPISGVVGKAEIMDSPAPGGLGGTYGGNALACA 316
                  ************************************************************************************************** PP

                  HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.....HHHHHHHHHCTEE-EEETT..TEEEE---TT- CS
  Aminotran_3 300 valavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.....keilkkakekGvlilsaGd..nvirllpplii 390
                  +alavl+i+e+e+ll +  +lg++l+++L++l++ky  i++vRg+G+m a+e+ + +++k+     ++il+ a ++G+l++++G   n+ir+l pl++
   EHU00325.1 317 AALAVLDIFEQENLLARSCQLGEQLNQRLRQLADKYACIGDVRGVGFMQAVEILDVDTHKPdsaltQKILDCACQEGLLLIKCGLhrNTIRFLAPLVT 414
                  **********************************************************9999****99***************9888*********** PP

                  -HHHHHHHHHHHHHH CS
  Aminotran_3 391 tdeeidelleilkka 405
                  td +++e+l i+  a
   EHU00325.1 415 TDSQLEEALHIFDIA 429
                  *********999755 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.3e-07    0.0066      14     289 ..      66     349 ..      59     424 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.3e-07
                    TTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHH............HTTT-EEE CS
  Aminotran_1_2  14 dsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllk............lnpgdeil 97 
                    + ++p + +++ ++    l ++ + +   + g+ el ++l k++g      +++ ++v ++sGa a+ +a++ +              +++g+  l
     EHU00325.1  66 GHNHPAVVNAVTRQLG--LVSHACFQVVAYPGYIELAQRLNKLVG-----GEDHYKSVFFTSGAEAVENAVKIARAytqrsgiiafdgAFHGRTLL 154
                    4455555555555554..788889999999999************.....6778889********9999998888744444444444445555544 PP

                    EEESS..-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE...TEEEEEEESS-TTT--B--.HHHHHHHHHHHHHTTEEEEEE CS
  Aminotran_1_2  98 vpdpt..yasyknilrlsggevvryplyseedfhldlealeealkeapegnk...ktkvilvesphNPtGtvat.leeleklldlakkynlllfvD 187
                      ++t   a+yk+++    + v+r p  + +  +++  + ++al+++ + ++   ++  i++e ++   G ++  ++  ++l +++++++++l++D
     EHU00325.1 155 GVTLTgmSAPYKQNFGSFPSDVYRLP-FPNPLHGVTEADCLKALEQLFAVQIlpeRVAAIIIEPVQGDGGFLPAgPAFMQALRRITTQHGIVLICD 249
                    44333335556666666666666666.3346667777777777777665555999999*****9999999998735567888899999******** PP

                    ETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH..HHHHHHH CS
  Aminotran_1_2 188 eaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs..eleemrq 279
                    e+ +gf  + + ++ + ++++++    ++ sl+  + + G     ++g+a++ +  +    ++++   +l+ aa++a+l+ +++++   +  +  +
     EHU00325.1 250 EIQSGFGRTGTMFAFQQLGIKPDLV-TTAKSLAGGLPISG-----VVGKAEIMDSPAPGGLGGTYggNALACAAALAVLDIFEQENLlaRSCQLGE 339
                    ********98876555666666555.77777777777777.....888777777776666666666888888888888888777644443333333 PP

                    HHHHHHHHHH CS
  Aminotran_1_2 280 rlqkrrkelr 289
                    +l++r ++l 
     EHU00325.1 340 QLNQRLRQLA 349
                    3334333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3195.26
//
Query:       EHU00326.1  [L=377]
Description: putative hippurate hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-29  101.1   0.2    7.7e-29  100.9   0.2    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
      4e-09   36.4   0.1    9.8e-09   35.1   0.1    1.6  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.043   13.5   0.4       0.41   10.3   0.1    2.3  2  BAG6           BCL2-associated athanogene 6


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.2   1.3e-32   7.7e-29       2     204 ..      63     366 ..      62     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.3e-32
                    EEEES-BSSTTCG.GGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEE CS
                    xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeet.dgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavf 95 
                    l++++D++p +++ +     +++ ++ ++ +++G+d++++++l+a+e l++ + +    +gt+ ++fqp+EEg  +Gaka+++ gl+er+++dav+
     EHU00326.1  63 LRADMDALPVQDKgEV---AWTSLQQ-NRSHACGHDGHTTMLLGAAEKLAR-DVA---FDGTVCFIFQPAEEGL-AGAKAMIDdGLFERFPCDAVY 149
                    89*******5555122...5566645.9********************987.333...39************76.********888899******* PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                    +lh + p ++  g ++ +++                                                                            
     EHU00326.1 150 ALHNW-PELPL-GVIQTRPGpimaaadrfditvkgagghaaqphlthdtllalselvvqlntlvpraldpcepalltvtrmqggfshnmipaeani 243
                    *****.99999.9999999999************************************************************************** PP

                    ................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH.TTTE.EEEEE CS
                    ................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxx.xxxxx RF
  Peptidase_M20 116 ................................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsg.pggtdarff.agip.tvmif 175
                                                    ++ev  + +++p+t+n d++ ++ala+   +  g + +l +++   ++d++f+ ++ p +++++
     EHU00326.1 244 tgtvrtfnpaaqdiiesrlrqmaehiaaahglQAEVN-YLRYYPATINsDAEATQALAALHAA--GMQARLAAQPaLTSEDFAFMlQAKPgAYLWI 336
                    *******************************99****.99********999999999888766..99999999999*********66669677999 PP

                    E..SSGGCTTSTTTEEEHHHHHHHHHHHHHH CS
                    x..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 176 g..pgsglaHspnEyvdledlekgikvlarl 204
                    g  p+ +  H+   +++++ ++ gi+++  l
     EHU00326.1 337 GsaPC-KPLHHAAYDFNDALIPHGIRAFITL 366
                    95455.99***************99998665 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   1.6e-12   9.8e-09       9     107 ..     176     272 ..     173     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.6e-12
                 EEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCST CS
   M20_dimer   9 gkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekeape 107
                 + itvkg +gH++ p+   + + +l++l+ +l+ +  +     +  +  l+vt  +gG++ n+ip+ea  + ++R+ +    + ++ ++++++e+ a++
  EHU00326.1 176 FDITVKGAGGHAAQPHLTHDTLLALSELVVQLNTLVPRA--LDPCEPALLTVTRMQGGFSHNMIPAEANITGTVRTFNPAAQDIIESRLRQMAEHIAAA 272
                 89********************************96553..4666666689************************777788899999999999988765 PP

>> BAG6  BCL2-associated athanogene 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.077   4.6e+02      42      61 ..      19      38 ..       8      41 .. 0.80
   2 ?   10.3   0.1   6.9e-05      0.41      58     110 ..     193     248 ..     188     254 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.077
        BAG6 42 eeaqrildrvsEalhllsha 61
                 ++qr+ d v+  lh l+  
  EHU00326.1 19 FQEQRTSDIVARFLHDLGIE 38
                589************99865 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.9e-05
        BAG6  58 lshalhalSDlrldLsqpppRhLsv.rPilveqsavvssgiv...ipiqvnlanlvt 110
                   ++l alS l ++L++  pR L    P l+    + + g     ip ++n++ +v+
  EHU00326.1 193 THDTLLALSELVVQLNTLVPRALDPcEPALLTVTRM-QGGFShnmIPAEANITGTVR 248
                 556889*****************8559*98764433.22222233788888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.30s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2605.36
//
Query:       EHU00327.1  [L=308]
Description: D-3-phosphoglycerate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-43  148.8   0.0    1.3e-43  148.4   0.0    1.1  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0049   17.1   0.0     0.0073   16.5   0.0    1.3  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.041   13.5   0.0    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   2.2e-47   1.3e-43       3     178 .]     102     273 ..     100     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 2.2e-47
                   HHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhl 99 
                   ++l l+r ++++ +++r+++w   +a++    s+++vGi+GlG++G+a+   l+ +g++  +++r++++    +      ++l ++la+sDi+++ l
    EHU00327.1 102 AVLGLHRDMPRYFQQQRAQQW---QAHSAMPASERRVGIMGLGELGRAALTQLQTLGFDCGGWSRTPHQIP-GAVCWHGDAQLPAFLARSDILVCLL 194
                   6899*****************...778888899*********************************99877.333333557**************** PP

                   --STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 100 pltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   pltp+t++l+na+ +++++ ga l+ ++RG+ ++e++Ll+aL+sg++++a++Dv+e+eplp+ + ++++p + ltPHia
    EHU00327.1 195 PLTPSTEGLLNARLFSQLPAGAALVQAGRGPQLNEQDLLTALDSGQLRAAVIDVTEPEPLPAGHAFWTHPAIWLTPHIA 273
                   ******************************************************************************8 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06    0.0073       2      91 ..     135     223 ..     134     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgst 91 
                    +g++GlG++G+   ++l+  g++  ++ rt+ ++  +v    ++ +++ +++a+ d+ +++++ ++ ++ +++  l+++l +g+ l++ + 
     EHU00327.1 135 VGIMGLGELGRAALTQLQTLGFDCGGWSRTPHQIPGAVC--WHGDAQLPAFLARSDILVCLLPLTPSTEGLLNArLFSQLPAGAALVQAGR 223
                    89*******************************999995..556778889***********************99***********99885 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.9e-06     0.041      39     130 ..      39     299 ..      30     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.9e-06
                 TESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................... RF
  2-Hacid_dh  39 dadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt................................... 102
                 +++a+i ++     ++v +++p+Lk+   +g+G +++Dl+a+ ++  lV  +    t+ + E+                                    
  EHU00327.1  39 QVEAVIAWVPP---DDVTRRFPNLKILFSVGAGAEQFDLSALPAHLPLVRMIEPGLTQGMVEYItfavlglhrdmpryfqqqraqqwqahsampaserr 134
                 57777777777...899999***********************99777777778999999999888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  EHU00327.1 135 vgimglgelgraaltqlqtlgfdcggwsrtphqipgavcwhgdaqlpaflarsdilvcllpltpstegllnarlfsqlpagaalvqagrgpqlneqdll 233
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ......................................T-BHHHHHHHHHHHHHHHHHHHTTCCGT CS
                 ......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ......................................aaTeeaqeniaeeaaenlvaflkgespa 130
                                                        a+++    ++   + nl++f +ge++ 
  EHU00327.1 234 taldsgqlraavidvtepeplpaghafwthpaiwltphIASRTQNDSAVSALVANLRRFQRGEPLH 299
                 888888888888888888888888888888888888877777777777777778888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2187.64
//
Query:       EHU00328.1  [L=280]
Description: histone acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-23   80.5   0.0    9.2e-20   70.7   0.0    2.1  2  Acetyltransf_18  Acetyltransferase (GNAT) domain
    9.9e-12   44.9   0.1    1.8e-10   40.9   0.0    2.1  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.1e-11   42.9   0.2    1.2e-10   41.7   0.2    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      1e-10   41.9   0.0    2.1e-10   40.8   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.2e-05   25.1   0.3    6.5e-05   22.8   0.3    2.2  2  FR47             FR47-like protein
    0.00011   22.2   0.0     0.0022   18.1   0.0    2.4  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.001   19.7   0.9     0.0046   17.6   0.5    2.2  2  Acetyltransf_3   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.059   13.5   0.0       0.12   12.6   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_18  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0012       2.7      28      87 ..      41     105 ..      33     119 .. 0.75
   2 !   70.7   0.0   4.1e-23   9.2e-20       2     112 ..     154     262 ..     153     273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0012
  Acetyltransf_18  28 lvvveedgeivGyglarktrkglk.iGPlvAeneei....AeaLlkalvanaegkkvridvpeen 87 
                       vv+ee+ge+ G +++++  ++ + iG ++  n+++     ++L+ al++++ g +vr++  ++ 
       EHU00328.1  41 GVVIEEQGEVIGSAILWRWGDEAAtIGLVIVANQHQgrglGKQLMLALLEKVPGYNVRLHATDMG 105
                      6999************999888766**99888887612225678888899999988999887764 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 4.1e-23
  Acetyltransf_18   2 lelDreafGadRskfLkrrlkqaeqklvvveedgeivGyglarktrkglkiGPlvAeneeiAeaLlkalvanaegkkvridvpeenkalielle 95 
                      +++D++a G  R +++ ++++  +q++++++++++ +G++ +r++ +g++iGP++A++  +A+aL++al+++ +g+ +r+d+ + +  + ++le
       EHU00328.1 154 VKMDQAAHGLYRPELIAHLIN-DNQTVILQDDAQQARGFASLRRFGRGWVIGPVIADSLPVAQALTAALMQGLKGEYLRMDTDA-ALPMASWLE 245
                      799******************.566699999***************************************************99.678899*** PP

  Acetyltransf_18  96 klgfkevfecarmvkng 112
                      +lg+ +v+ +++mv+++
       EHU00328.1 246 SLGLANVDAPVTMVRGQ 262
                      **************964 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   7.9e-14   1.8e-10      34     111 ..      42     119 ..      27     124 .. 0.88
   2 ?    1.8   0.0     0.093   2.1e+02      18      74 ..     165     223 ..     145     238 .. 0.68

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7.9e-14
  Acetyltransf_10  34 lvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      +v ee+g+++G + l r g+    i+l++V+++++g+G+gk+L+ a++e++        + ++a++  +++YeklGF+a+g+
       EHU00328.1  42 VVIEEQGEVIGSAILwRWGDeaaTIGLVIVANQHQGRGLGKQLMLALLEKVPGY----NVRLHATDMGKGLYEKLGFVACGN 119
                      6789999***9996666666668***************************9433....79*******************986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.093
  Acetyltransf_10  18 spealrerieegealllvaeeggkivGvielrdgs...hisllfVdpeyrgqGigkaLle 74 
                       pe +++ i + + ++++ ++ ++  G+++lr+ +    i+ ++ d+    q + +aL++
       EHU00328.1 165 RPELIAHLI-NDNQTVILQDDAQQARGFASLRRFGrgwVIGPVIADSLPVAQALTAALMQ 223
                      456677777.7777789999999999***9977654555555555555555555555555 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.2   5.1e-14   1.2e-10       5      75 ..      41     115 ..      37     116 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.1e-14
                     EEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH..TT.SEEEEEEEEETHH.HHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea..ae.kgiileqlelnae.kaikfYeklGFe 75 
                       V+e++g+++G ++l++ +   a i+ + V+ +++g+G+G++L+ a  ++  g++   ++l+a+    ++YeklGF+
      EHU00328.1  41 GVVIEEQGEVIGSAILWRWGdeaATIGLVIVANQHQGRGLGKQLMLAllEKvPGYN---VRLHATdMGKGLYEKLGFV 115
                     5799*********99999998866666699***************86332254532...34422224578*******8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   9.6e-14   2.1e-10      24     117 .]      29     114 ..      10     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 9.6e-14
                     HHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  24 feesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +e++++ +   +++v+ee ge+iG + l+   d   + a i  + V+ +++g+GlG++L+ al+e++   ++    l+     d   +lYeklGF
      EHU00328.1  29 REDWAIGIQLgEGVVIEEQGEVIGSAILWRWGD---EAATIGLVIVANQHQGRGLGKQLMLALLEKVPGYNV---RLHA---TDMGKGLYEKLGF 114
                     4455444444499******************99...899999999********************8888855...6633...44459*******9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.3   2.9e-08   6.5e-05      10      78 ..      52     115 ..      44     121 .. 0.87
   2 ?   -2.9   0.0       3.2   7.1e+03      30      40 ..     183     193 ..     167     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.9e-08
                 --EEEEEEE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  10 gelaawilrkdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfe 78 
                 g+++ w+   +   +g + v ++h++rGlg++l  al +++   g++v l++    +    lyeklGf 
  EHU00328.1  52 GSAILWRWGDEAATIGLVIVANQHQGRGLGKQLMLALLEKV--PGYNVRLHAT---DMGKGLYEKLGFV 115
                 678889999999**************************998..5888888875...5678999999996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.2
                 -GGG-SSSHHH CS
        FR47  30 lpehrrrGlgs 40 
                 ++  + rG++s
  EHU00328.1 183 DDAQQARGFAS 193
                 44456678776 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.7e-07    0.0022       2     108 ..       5      98 ..       4     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.7e-07
                     EEEE-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHH CS
  Acetyltransf_9   2 irelteedldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLla 96 
                     ir++t++d+++v+++  +a ++ +++     e +   ++ ++ +++e++ge++g++ l ++    ++   +aa ++ V va +h+grg+ ++L+ 
      EHU00328.1   5 IRTMTSDDIPQVHAMS-QALNWPHRR-----EDWAIGIQLGEGVVIEEQGEVIGSAILWRW----GD---EAATIGLVIVANQHQGRGLGKQLML 86 
                     7888888888877654.455555554.....678999999999999999999999988665....33...6899********************* PP

                     HHHHHHHHTT-- CS
  Acetyltransf_9  97 raleemreegqp 108
                     ++le++   +++
      EHU00328.1  87 ALLEKVPGYNVR 98 
                     ***998765544 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.5   2.1e-06    0.0046       4     108 ..       5      92 ..       3     115 .. 0.67
   2 ?   -1.2   0.0       1.3     3e+03      32      32 ..     177     177 ..     140     235 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
  Acetyltransf_3   4 LrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlaps.fwgkGya 97 
                     +r +t++D++++++ +s+      l++p      e+w   +      + g g +i+++++ viGs+ l++  +  e+a +g+++    ++g+G++
      EHU00328.1   5 IRTMTSDDIPQVHA-MSQA-----LNWPH---RREDWAIGI------QLGEGVVIEEQGE-VIGSAILWRWGD--EAATIGLVIVANqHQGRGLG 81 
                     56666666666664.4422.....23333...223333332......2345677744444.7*******6555..56****9999666******* PP

  Acetyltransf_3  98 teavralleya 108
                     +  + alle +
      EHU00328.1  82 KQLMLALLEKV 92 
                     ******99865 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
  Acetyltransf_3  32 l 32 
                     +
      EHU00328.1 177 Q 177
                     1 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.2e-05      0.12      24      53 ..      63      92 ..      44     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.2e-05
  Acetyltransf_CG 24 vldfthTeVpeelrGkGiAkkLvkaaldda 53
                       ++  ++V  +++G+G++k+L+ a l+++
       EHU00328.1 63 AATIGLVIVANQHQGRGLGKQLMLALLEKV 92
                     55666789*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2147.84
//
Query:       EHU00329.1  [L=443]
Description: FAD dependent oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-64  217.6   3.1    4.9e-64  217.1   3.1    1.2  1  DAO              FAD dependent oxidoreductase
    7.4e-08   31.9   0.8    2.5e-06   26.8   0.3    2.3  2  GIDA             Glucose inhibited division protein A
    2.1e-07   30.4   9.1    3.9e-06   26.2   9.1    2.1  1  FAD_binding_2    FAD binding domain
    4.4e-07   30.0   0.1    1.4e-06   28.4   0.1    2.0  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      6e-07   29.0   0.6    4.8e-06   26.0   0.1    2.0  2  Thi4             Thi4 family
      1e-06   28.2   0.4      5e-06   26.0   0.4    2.0  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    0.00018   21.0   3.3    0.00029   20.3   3.3    1.6  1  FAD_oxidored     FAD dependent oxidoreductase
    0.00037   19.9   0.6     0.0007   18.9   0.6    1.4  1  FAD_binding_3    FAD binding domain
     0.0015   17.9   0.0     0.0032   16.8   0.0    1.5  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0019   17.3   1.0     0.0021   17.2   0.2    1.4  2  Lycopene_cycl    Lycopene cyclase protein
     0.0046   16.3   1.0      0.034   13.4   0.3    2.0  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
      0.006   15.3   1.8      0.006   15.3   1.8    2.0  2  HI0933_like      HI0933-like protein
  ------ inclusion threshold ------
      0.031   13.9   0.1      0.053   13.2   0.1    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.054   13.4   1.5        0.1   12.5   0.0    1.9  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
        0.2   11.5   0.0         24    4.8   0.0    2.3  2  ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extens
       0.41    9.4   2.1       0.62    8.8   2.1    1.2  1  Trp_halogenase   Tryptophan halogenase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   3.1   4.4e-67   4.9e-64       1     352 []      19     413 ..      19     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 4.4e-67
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 dvv+iG+Gi+G+++ ++La++g  V+l+ekg  +g ++S+rn+g+++++ r+ +   el +l+ eal+ +++l++e+g ++++rr+Gl++ +++e++ +
  EHU00329.1  19 DVVVIGAGIAGAAATWYLAKQGlkVVLIEKG-LVGAEQSSRNWGWCRQQNRDER---EL-PLVIEALRGWEQLSQETGEELGFRRSGLVYATRNEADIA 112
                 9******************************.9999*************99666...44.*************************************** PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTT.STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEE CS
         DAO  98 aldkllallleagldaelldaeevrelepa.lpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaad 194
                 a+dk+ ++++++g+++ +l+a++++++ p+   ++lg++  p++g ++p+ +++++   a+++G+++++++ v+gl+ + g+v+gv  +t+ g +++  
  EHU00329.1 113 AWDKWGQMAKQYGVRSDILNARQAKAMTPGsATDWLGGVSAPTDGAAEPRLAAPGIVIGAQKNGAQVFQQCAVRGLDITAGRVSGV--VTErGLIKT-S 208
                 **999999999***999************9544*******************************************9999******..666698633.6 PP

                 EEEE--GGGHHHH.HTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE...................... CS
         DAO 195 avVnaaGawsdll.gllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad...................... 270
                  v+ aaGaw++ + +++  ldlp+  v g+ ++++p+ ++     + +++++         ++p +dg+  v  ++                       
  EHU00329.1 209 RVICAAGAWTSMFcRRH-GLDLPLGNVIGTAFRTQPIRQAITV--PFYTERF--------ACRPQLDGSYTVSVSGRgrlepgaqglrylkqfyptfks 296
                 6*********9554666.3566*************99884322..3333333........344444443332222222244444477999********* PP

                 ................................EETTCSSTSCSHHHHHHHHHHHHHHSGGGCG..EEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEEC CS
         DAO 271 ................................eesgdddpevdeedidellealrklfPqlgd..vlrkwaGlrp.lpdglpligetpgvkglylatGh 334
                                                 e+ +  dp++d   ++  l a+r+ fP+l++  v ++w G+ + +pd  p+i  + + +gl+l +G+
  EHU00329.1 297 rrknltlnlgikpffhgpeamgrwdldsvspfERMRILDPAADRSVVENGLAAMRREFPALANlkVAQAWGGMIDsTPDAIPVISTVAKLPGLVLSAGF 395
                 ******************999999999887766666666999999***************96633668*******77*********8899********* PP

                 TTTHHHHHHHHHHHHHHH CS
         DAO 335 sghGltlapatGkllael 352
                 s hG+  +p++G+l+ael
  EHU00329.1 396 SAHGFGIGPGAGRLAAEL 413
                 ****************97 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3   2.3e-09   2.5e-06       1      29 [.      19      47 ..      19      68 .. 0.85
   2 ?    3.0   0.0     0.038        43     117     153 ..     184     219 ..     173     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.3e-09
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                dv+ViG+G AG +A + +a+ G+kv+Li 
  EHU00329.1 19 DVVVIGAGIAGAAATWYLAKQGLKVVLIE 47
                79*************************93 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.038
                 -EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT CS
        GIDA 117 eveeliveekkvkgvvtedgetikakavviatGtflk 153
                  v  l+++ ++v+gvvte+g  ik++ v+ a+G++ +
  EHU00329.1 184 AVRGLDITAGRVSGVVTERGL-IKTSRVICAAGAWTS 219
                 577888999*********995.79999******9654 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   9.1   3.4e-09   3.9e-06       1     208 [.      19     223 ..      19     238 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.4e-09
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SS.GGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeq.kkagikdspelhrtdtlkaldela.dqplveafveaapeavd 94 
                    Dv+ViG+G+AG aA+  +a++Glkv+++ek+ +  ga + s  + +   ++ + +++         ++++ ++ +e+   ++   +++++ ++ ++
     EHU00329.1  19 DVVVIGAGIAGAAATWYLAKQGLKVVLIEKGLV--GAEQSSRNWGWCRQQNRDeRELPLVIEALRGWEQLSQETGEELgFRRSGLVYATRNEADIA 112
                    9*******************************9..7666666666655533330333333333334444444444444477777778887777788 PP

                    HHHHTT----BCCTS....SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHH.HHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  95 eLeelgvpfsrtedg....pvdvrelGglsatartlhdaadarretlvtghallarl.vesarkagvdfqerteadeLivedgrvtGavvenpesg 185
                       ++g + ++   g     +++r+  ++++ + t +  ++   +  +  ++l+a++ v +a+k+g +++ +++++ L ++ grv+G+v e     
     EHU00329.1 113 AWDKWGQMAKQ--YGvrsdILNARQAKAMTPGSATDWLGGVSAPTDGAAEPRLAAPGiVIGAQKNGAQVFQQCAVRGLDITAGRVSGVVTE----- 201
                    88888777766..22334456666666666654444433333225566777888876257899999*********************9988..... PP

                    CEEEEEESEEEE-----GG.... CS
  FAD_binding_2 186 revrirakavvlatgGfgrallk 208
                     +  i+  +v++a+g++   +++
     EHU00329.1 202 -RGLIKTSRVICAAGAWTSMFCR 223
                    .33466789******99964444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   1.3e-09   1.4e-06       1      28 [.      22      49 ..      22      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.3e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   ++GaG++G++a ++Lak+g++v+l+ek+
     EHU00329.1 22 VIGAGIAGAAATWYLAKQGLKVVLIEKG 49
                   8*************************97 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   4.3e-09   4.8e-06       8      51 ..       7      50 ..       5      54 .. 0.84
   2 ?    0.8   0.0      0.22   2.4e+02     109     145 ..     173     208 ..     165     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.3e-09
                HHHHHHHHT.EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSS CS
        Thi4  8 yfedllkya.esDvvivGaGssGLtaayylakkpdlkvailersv 51
                y++d  ++   +Dvv++GaG +G +a+ ylak+ +lkv+++e+ +
  EHU00329.1  7 YVQDSPDFPdAADVVVIGAGIAGAAATWYLAKQ-GLKVVLIEKGL 50
                566666665147*********************.********865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.22
                 TSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTC CS
        Thi4 109 qlanvkllnavaveDlivregegvaGvvinwtlvela 145
                 q+ ++++++  av  l +    +v+Gvv++  l++++
  EHU00329.1 173 QKNGAQVFQQCAVRGLDITA-GRVSGVVTERGLIKTS 208
                 56789999999999998888.79******99998876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.4   4.5e-09     5e-06       2      36 ..      19      51 ..      18     247 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.5e-09
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtcl 36
                 dvvviG+G+AG aa  +la++g+kv+l+e  + ++
   EHU00329.1 19 DVVVIGAGIAGAAATWYLAKQGLKVVLIE--KGLV 51
                 8***************************5..3233 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   3.3   2.6e-07   0.00029       1      31 [.      19      49 ..      19     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.6e-07
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  DvvV+G+g+aG aA    a++G kv+L+e+ 
    EHU00329.1 19 DVVVIGAGIAGAAATWYLAKQGLKVVLIEKG 49
                  9****************************85 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6   6.3e-07    0.0007       2      32 ..      18      48 ..      17      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.3e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+++GaG aG+ ++  L+++G +vvl+ek
     EHU00329.1 18 ADVVVIGAGIAGAAATWYLAKQGLKVVLIEK 48
                   69****************************9 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.8e-06    0.0032      28      66 ..      17      55 ..      12      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.8e-06
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleq 66
                 +a v+viG+G+aG +A +  ++ g kV+++++    +eq
   EHU00329.1 17 AADVVVIGAGIAGAAATWYLAKQGLKVVLIEKGLVGAEQ 55
                 79*************************999987666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.8e-06    0.0021       1      47 [.      19      65 ..      19      88 .. 0.75
   2 ?   -4.0   0.0       5.2   5.8e+03      93     128 ..     179     216 ..     177     224 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsll..fpnnyvWsde 47
                   DvvviGaG Ag +    l  ak+glkvvlie +       + n  W+ +
     EHU00329.1 19 DVVVIGAGIAGAAATWYL--AKQGLKVVLIEKGLVGAeqSSRNWGWCRQ 65
                   9***********999999..**********9874332002444466655 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.2
  Lycopene_cycl  93 llerlvengvklleakvesveeeea..geslvvleggr 128
                    + ++++  g   + ++v  v+ e      s+v++++g 
     EHU00329.1 179 VFQQCAVRGLDITAGRVSGVVTERGliKTSRVICAAGA 216
                    66788888888888888888888776667777777775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.3   3.1e-05     0.034       1      34 [.      21      53 ..      21      65 .. 0.86
   2 ?    1.3   0.0      0.15   1.7e+02      95     135 ..     176     217 ..     171     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnign 34
                 ++iGaG aG aa   l k gl +++ +Ekg +g+
   EHU00329.1 21 VVIGAGIAGAAATWYLAKQGL-KVVLIEKGLVGA 53
                 79*******************.79******8774 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
  Pyr_redox_3  95 elpiklfeeVesvkk.edegfevetsketyeAkkviiAtGef 135
                    ++ +++ V+ ++  +++   v t+++ +++++vi A+G +
   EHU00329.1 176 GAQVFQQCAVRGLDItAGRVSGVVTERGLIKTSRVICAAGAW 217
                  556667777777776334557799****************86 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.8   5.4e-06     0.006       2      32 ..      19      49 ..      18      54 .. 0.95
   2 ?    0.3   0.1       0.2   2.2e+02     119     164 ..     172     216 ..     168     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv+viG+G AG  a+  +ak+g +V+l+ek+
   EHU00329.1 19 DVVVIGAGIAGAAATWYLAKQGLKVVLIEKG 49
                 8****************************97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.2
                  HHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  ++++g ++  +++v++++ +++++  v t +++ +++++++ A G 
   EHU00329.1 172 AQKNGAQVFQQCAVRGLDITAGRVSGVVT-ERGLIKTSRVICAAGA 216
                  578999*****************999999.99***********996 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.7e-05     0.053       1      40 [.      20      60 ..      20      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknG 40
                ++++GaG  G    ++Lak+g +v+li ++   +e+ ++n+
  EHU00329.1 20 VVVIGAGIAGAAATWYLAKQGLKVVLIEKGLvGAEQSSRNW 60
                689************************98877677644444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.2e-05       0.1       2      30 ..      20      48 ..      19      73 .. 0.87
   2 ?   -0.6   0.3      0.91     1e+03       4      34 ..     169     199 ..     168     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.2e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                v viGaG+ Ga  +  +a++gl+Vvl++ 
  EHU00329.1 20 VVVIGAGIAGAAATWYLAKQGLKVVLIEK 48
                89************************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.91
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseea 34 
                 viGa   Ga++ +++a +gl+++   +s   
  EHU00329.1 169 VIGAQKNGAQVFQQCAVRGLDITAGRVSGVV 199
                 8999999**************9987666555 PP

>> ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.028        31      36      67 ..     180     212 ..     170     220 .. 0.82
   2 ?    4.8   0.0     0.022        24      34      86 ..     217     269 ..     214     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.028
                      EEESS-TT-EEETT-EEEEEECTTCE.EEEEE- CS
  ATP-synt_ab_Xtn  36 fkpkvkvgdkvsggdilGtvqeteli.ehkimv 67 
                      f++ +  g  +++g + G+v+e  li + ++++
       EHU00329.1 180 FQQCAVRGLDITAGRVSGVVTERGLIkTSRVIC 212
                      6667778999****************6666665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.022
                      EEEEESS-TT-EEETT-EEEEEECTTCEEEEEE--TT-EEEEEEE--EEEE-T CS
  ATP-synt_ab_Xtn  34 wefkpkvkvgdkvsggdilGtvqeteliehkimvppkvegkvkeiaeegeytv 86 
                      w+     ++g  +  g+++Gt   t+ i++ i vp+ +e    + + +g+ytv
       EHU00329.1 217 WTSMFCRRHGLDLPLGNVIGTAFRTQPIRQAITVPFYTERFACRPQLDGSYTV 269
                      666666778889999********************988877777777788877 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.1   0.00055      0.62       1      37 [.      19      52 ..      19      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00055
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                    ++v++G+G+aG  a  +lak++   l+v l+e+  +g
      EHU00329.1 19 DVVVIGAGIAGAAATWYLAKQG---LKVVLIEKGLVG 52
                    69********************...99*****97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3231.42
//
Query:       EHU00330.1  [L=554]
Description: ATP-binding component of an ABC superfamily peptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-53  178.4   0.0    1.4e-26   93.6   0.0    2.2  2  ABC_tran         ABC transporter
    8.9e-14   52.0   3.3     0.0053   16.6   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.5e-08   33.7   3.6    0.00049   19.6   0.2    3.9  2  SMC_N            RecF/RecN/SMC N terminal domain
    2.7e-08   34.2   2.1      0.019   15.3   0.2    4.0  3  AAA_22           AAA domain
    5.8e-08   33.3   1.9      0.012   16.0   0.2    2.9  2  AAA_16           AAA ATPase domain
    8.9e-08   32.6   0.3       0.11   12.9   0.0    3.7  3  AAA              ATPase family associated with various cellul
    1.4e-07   31.1   0.5      0.024   14.4   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
    5.9e-07   29.5   1.6     0.0099   15.8   0.2    2.5  2  NACHT            NACHT domain
    1.2e-06   28.5   1.3      0.093   12.6   0.0    3.8  3  RsgA_GTPase      RsgA GTPase
    2.7e-06   27.4   3.2       0.15   12.1   0.3    4.1  3  AAA_5            AAA domain (dynein-related subfamily)
      7e-06   25.8   2.5      0.032   13.9   0.0    2.4  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    7.7e-06   26.5   0.1      0.054   14.0   0.0    2.9  2  AAA_18           AAA domain
    8.1e-06   26.5   1.1        0.1   13.1   0.3    2.4  2  AAA_23           AAA domain
      1e-05   25.2   7.6      0.027   14.1   0.1    4.2  3  AAA_25           AAA domain
      2e-05   24.4   4.5      0.063   13.0   0.1    3.3  3  IstB_IS21        IstB-like ATP binding protein
    4.4e-05   23.3   1.0       0.14   11.9   0.0    2.7  2  AAA_24           AAA domain
    4.8e-05   23.5   4.9       0.22   11.7   0.8    3.8  2  AAA_33           AAA domain
      7e-05   22.8   0.1       0.15   12.0   0.0    2.6  2  APS_kinase       Adenylylsulphate kinase
    0.00012   21.6   0.3       0.51    9.7   0.1    2.4  2  PhoH             PhoH-like protein
    0.00012   22.3   0.0       0.65   10.2   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    0.00012   22.1   0.5      0.088   12.9   0.0    3.0  3  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    0.00013   21.5   0.2      0.049   13.0   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00024   20.9   0.4       0.22   11.3   0.0    2.7  2  PRK              Phosphoribulokinase / Uridine kinase family
    0.00026   20.9   0.8        1.3    8.9   0.1    3.1  3  MobB             Molybdopterin guanine dinucleotide synthesis
     0.0003   21.1   0.9        2.6    8.3   0.0    3.6  3  AAA_28           AAA domain
    0.00035   19.9   0.4       0.35   10.0   0.0    2.5  2  NB-ARC           NB-ARC domain
    0.00041   20.1   0.4       0.58    9.9   0.1    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    0.00041   20.1   1.2       0.54   10.0   0.0    2.9  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
    0.00046   19.5   0.6       0.63    9.2   0.0    2.4  2  TIP49            TIP49 P-loop domain
    0.00051   19.5   1.1         11    5.4   0.0    4.2  4  TniB             Bacterial TniB protein
    0.00072   19.0   7.5          2    7.7   0.1    4.8  5  ATPase           KaiC
    0.00073   19.1   0.1        1.4    8.4   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
    0.00074   19.5   0.2        1.1    9.3   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.001   18.9   0.0       0.49   10.0   0.0    2.4  2  AAA_15           AAA ATPase domain
     0.0021   18.1   0.0        1.1    9.4   0.0    2.8  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0033   17.9   0.0       0.11   13.1   0.0    2.4  2  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
      0.005   17.2   3.2        3.4    8.0   1.3    3.0  2  AAA_19           AAA domain
     0.0067   15.5   0.0        3.1    6.8   0.0    2.5  2  T2SSE            Type II/IV secretion system protein
     0.0075   16.6   0.1          6    7.3   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0077   15.8   0.2        6.4    6.3   0.0    3.2  3  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0084   15.8   6.2        1.9    8.1   0.0    3.4  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.011   15.7   0.6        2.8    7.8   0.0    3.2  3  NTPase_1         NTPase
      0.018   14.8   0.1        9.8    5.9   0.0    2.8  2  DEAD             DEAD/DEAH box helicase
      0.032   13.7   0.1        7.9    5.9   0.0    2.5  2  RecA             recA bacterial DNA recombination protein
       0.04   13.8   0.3         13    5.6   0.0    2.7  2  CPT              Chloramphenicol phosphotransferase-like prot
      0.042   13.3   1.6          2    7.8   0.1    2.4  2  Pox_A32          Poxvirus A32 protein
      0.057   12.7   0.1        8.8    5.5   0.0    2.4  2  Rad51            Rad51
       0.06   13.1   0.5          5    6.8   0.0    2.4  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.074   12.4   0.4          6    6.1   0.0    2.8  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.086   13.0   0.3         15    5.7   0.0    2.8  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.088   12.1   2.1        9.6    5.4   0.0    2.9  3  Zeta_toxin       Zeta toxin
        0.1   12.7   0.5        9.4    6.3   0.1    2.9  2  Dynamin_N        Dynamin family
       0.11   12.2   1.5        6.8    6.3   0.0    3.1  3  CoaE             Dephospho-CoA kinase
       0.11   11.7   0.0        7.4    5.6   0.0    2.2  2  G-alpha          G-protein alpha subunit
       0.12   12.4   0.1        9.3    6.2   0.0    3.0  3  ResIII           Type III restriction enzyme, res subunit
       0.26    9.9   0.1        6.2    5.3   0.0    2.3  2  AAA_13           AAA domain
       0.36   10.9   3.2        7.3    6.6   0.5    2.3  2  DUF87            Helicase HerA, central domain
        4.1    6.1  13.8       0.55    9.0   0.6    4.1  4  ABC_ATPase       Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   9.8e-26     3e-23       2     136 ..      33     190 ..      32     191 .. 0.93
   2 !   93.6   0.0   4.6e-29   1.4e-26       1     137 []     309     461 ..     309     461 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 9.8e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 +++ +++++ge++a++Ge+G+GK+t++++l+g  +     +eG+i++ g+++      + + +  ++++++ q   ++++p++++ ++           
  EHU00330.1  33 SDIRFTVQKGEVLALIGESGSGKTTIAMALMGYARHgckiAEGNIHVAGTNVMAltpaELRFFRGNKVAYIAQSaaASFNPGMKIIDQviepvvihgtm 131
                 6899*****************************9999999************999994445556689*******9999******99999********99 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++++++  + ++l l++ +dt+ ++ p+++SgGq qr++ a+al+++p++++lDEpt
  EHU00330.1 132 trkAAKAKALGLFRELALPN-PDTIGDRFPHQVSGGQLQRLMTAMALISDPEVVILDEPT 190
                 9888888899999****999.999999999*****************************9 PP

  == domain 2  score: 93.6 bits;  conditional E-value: 4.6e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH..............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx..............x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren..............e 80 
                 l+n++l+l +g+ ++i+Ge+G+GK+tL+ ++agl    +++il++g+ +     +++    ++i++++q   + l+p ++v++               +
  EHU00330.1 309 LENINLTLWKGQAIGIIGESGSGKTTLAHAIAGLNPACQEQILFNGHMVAGqmqKRTDNELRRIQYVFQMadTALNPAHSVEQIlsrpltlfhglsgiA 407
                 78*********************************************999966666666778899****98899*****99888***********8888 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++++++l+ ++l+    tv++++p sLS Gqkqrv laral+ +p+++l+DE t+
  EHU00330.1 408 RQNRLYQLLDLVRLPR---TVLSRRPWSLSSGQKQRVNLARALAAEPDVILCDEVTS 461
                 8888888888888766...9999999****************************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0081       2.5       3      20 ..      46      63 ..      44      80 .. 0.82
   2 !   16.6   0.0   1.7e-05    0.0053     235     302 ..     161     226 ..     139     227 .. 0.82
   3 !    9.1   0.1    0.0033         1       3      23 ..     323     343 ..     322     378 .. 0.86
   4 !   16.1   0.1   2.5e-05    0.0077     233     300 ..     429     494 ..     417     497 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0081
      AAA_21  3 vliGpNgsGKSnLLdald 20
                +liG  gsGK+++  al 
  EHU00330.1 46 ALIGESGSGKTTIAMALM 63
                8************99994 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.7e-05
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 +++S G+++ l  + al++++    ++++DEp + L+   + ++l+ +++  + +g+  i ++H+  ++
  EHU00330.1 161 HQVSGGQLQRLMTAMALISDP---EVVILDEPTTALDVTTQVEVLKAFRRVVKqRGVTAIYVSHDLAVV 226
                 788999999844444444444...9********************9995555559**********8876 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0033
      AAA_21   3 vliGpNgsGKSnLLdaldlla 23 
                 ++iG  gsGK++L  a+ +l 
  EHU00330.1 323 GIIGESGSGKTTLAHAIAGLN 343
                 69***************9984 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 2.5e-05
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                  +++lS+G+k+   l+ al++ +   +++l DE+ + L+  + + +l+l++el+r  g  vi+ +H+ +
  EHU00330.1 429 RPWSLSSGQKQRVNLARALAAEP---DVILCDEVTSALDTVVASAVLDLISELRReLGLSVIFISHDMH 494
                 5789****************999...9***********************999999**********976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.3    0.0038       1.2      26     206 ..      44     230 ..      34     242 .. 0.56
   2 !   19.6   0.2   1.6e-06   0.00049      25     209 ..     320     501 ..     309     512 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0038
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtkke 122
                 + a++G+ GSGK+ +  A+   +G +     +   ++  ih    +  +++ ae+  +  n+ +  ++  + +++   +++ +    + i g+  +k+ 
  EHU00330.1  44 VLALIGESGSGKTTIAMAL---MGYARH-GCK--IAEGNIHVaGTNVMALTPAELRFFRGNKVAYiAQSAAASFNPGMKIIDQVIEPVVIHGTMTRKAA 136
                 5688999999999999988...786444.333..34444444224445555555555333333322233333355555555555555556555544433 PP

                 HHH...HHHCTT-STT...........CS-HHHHH..HHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCC CS
                 xxx...xxxxxxxxxx...........xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       SMC_N 123 vse...llesagiske...........lLSgGekt..LvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemle 203
                  ++   l+++  +              + SgG+ +  ++a+aL+      +   +++lDe   aLD +   +v + +++  k+  +  i +s++  +++
  EHU00330.1 137 KAKalgLFRELAL--PnpdtigdrfphQVSGGQLQrlMTAMALI------SDPEVVILDEPTTALDVTTQVEVLKAFRRVVKQrgVTAIYVSHDLAVVA 227
                 3330003333333..03478888888888999755225555555......4444678999999999888888888888666553366677777776666 PP

                 C-S CS
                 xxx RF
       SMC_N 204 kad 206
                 ++ 
  EHU00330.1 228 QMA 230
                 663 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.6e-06
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                 +   i+G+ GSGK+ l  Ai    G + a + +     +++    +++   +  +++ +f+  d +l   ++  s+++ ++r  +  + + g  ++++ 
  EHU00330.1 320 QAIGIIGESGSGKTTLAHAI---AGLNPACQEQILFNGHMVAGqMQKRTDNELRRIQYVFQMADTAL---NPAHSVEQILSRPLTLFHGLSG-IARQNR 411
                 56679***************...45544433333333455555466677778889*****9999993...3444444444444443333333.344555 PP

                 HHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                 + +ll  +++ ++       +LS G+k+ v la  +A    +p  + l De+ +aLD    ++v +l+ e + +  + vi ++++m +    + 
  EHU00330.1 412 LYQLLDLVRLPRTvlsrrpwSLSSGQKQRVNLARALAA---EPD-VILCDEVTSALDTVVASAVLDLISELRRELGLSVIFISHDMHAVRAVCD 501
                 555555555555544444558999****9999988875...444.5678**********************99966655555555554443333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00041      0.13       5      26 ..      42      63 ..      38     109 .. 0.84
   2 ?    2.4   0.0      0.55   1.7e+02      80     128 ..     166     219 ..     119     222 .. 0.74
   3 !   15.3   0.2     6e-05     0.019       7      38 ..     321     367 ..     318     497 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00041
      AAA_22  5 agilvvtGesGtGKTtllrrll 26
                  +l+++GesG+GKTt +  l+
  EHU00330.1 42 GEVLALIGESGSGKTTIAMALM 63
                56899***********987765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.55
      AAA_22  80 ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                  +l++ + a a    +e++i+DE    l+   + e+l+ +r+ ++  + gv+ i+v
  EHU00330.1 166 GQLQRLMTAMALisdPEVVILDEPTTaLDvttQVEVLKAFRRVVK--QRGVTAIYV 219
                 45555555555577789******9998987655888888888888..888887765 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 6e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee...............e 38 
                  + ++GesG+GKTtl+  ++  +++ +++                 +
  EHU00330.1 321 AIGIIGESGSGKTTLAHAIAGLNPACQEQILfnghmvagqmqkrtdN 367
                 5679***************9999877666665444444444444441 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.7e-05     0.015      21      65 ..      41      82 ..      28     217 .. 0.68
   2 !   16.0   0.2     4e-05     0.012      27      89 ..     322     404 ..     318     494 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.7e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqles 65
                +g  e++ l+GesG+GK++++ +l+  + ++g+  ++g+ +  ++
  EHU00330.1 41 KG--EVLALIGESGSGKTTIAMALM-GYARHGCKIAEGNIHVAGT 82
                33..8999****************9.5666656666666555544 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4e-05
      AAA_16  27 vllsGesGvGKsslvrell..ralekd....ggiflrgkcdqlesa....ipy..salaqalareellrqllde........a 89 
                 + ++GesG+GK++l+ +++  ++++++    +g+ ++g+ ++ + +    i y  ++  +al   + ++q+l++        +
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAglNPACQEqilfNGHMVAGQMQKRTDNelrrIQYvfQMADTALNPAHSVEQILSRpltlfhglS 404
                 6699*************993346666667765666888888884444444555544455555555555555555333333221 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0014      0.44       2      23 ..      46      76 ..      45     123 .. 0.69
   2 !   12.9   0.0   0.00037      0.11       3      52 ..     324     378 ..     322     392 .. 0.64
   3 ?    4.5   0.0      0.14        43      47     113 ..     438     494 ..     411     501 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0014
                EEESSTTSSHHHHHHHHHHHH.........T CS
         AAA  2 llyGppGtGKTllakavakel.........g 23
                 l+G  G GKT++a a++  +         +
  EHU00330.1 46 ALIGESGSGKTTIAMALMGYArhgckiaegN 76
                599***************9974433333332 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00037
                 EESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSS...STTHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake..lgvefleisgsellsk...yvgesekkirelfke 52 
                 ++G  G GKT+la+a+a    + +e + ++g+ +  +      +  ++i+ +f+ 
  EHU00330.1 324 IIGESGSGKTTLAHAIAGLnpACQEQILFNGHMVAGQmqkRTDNELRRIQYVFQM 378
                 689**************98443355566666666544111334444455555555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.14
                 HHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGG CS
         AAA  47 relfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpd 113
                 ++ ++ a++ a +p +++ DE+ +   +           v+++ l  +++++++ + + vi ++++++
  EHU00330.1 438 KQRVNLARALAaEPDVILCDEVTSALDTV----------VASAVLDLISELRRELG-LSVIFISHDMH 494
                 45556667777789*********999888..........67777777777776655.77777777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   7.6e-05     0.024      17      39 ..      37      59 ..      30      66 .. 0.77
   2 !   14.3   0.0   8.3e-05     0.026      24      45 ..     321     342 ..     311     355 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.6e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                ++++  g +  l+G+sGsGK+T+ 
  EHU00330.1 37 FTVQK-GeVLALIGESGSGKTTIA 59
                45553.45999***********96 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.3e-05
      AAA_29  24 atlltGpsGsGKSTllDAiqal 45 
                 a+ ++G+sGsGK+Tl  Ai+ l
  EHU00330.1 321 AIGIIGESGSGKTTLAHAIAGL 342
                 5669***********9999866 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1    0.0003     0.094       2      28 ..      44      70 ..      43      77 .. 0.87
   2 !   15.8   0.2   3.2e-05    0.0099       4     141 ..     323     449 ..     320     481 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0003
                CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegk 28
                +++l Ge+GsGKTt +  l+  +++g+
  EHU00330.1 44 VLALIGESGSGKTTIAMALMGYARHGC 70
                7899***************98888776 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.2e-05
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.. CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.rsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgqke 101
                  + Ge+GsGKTtL++ +a  +   +++q    +  ++  ++++++++  ++ ++++f+  +    p       + ++  r L ++ gl  ++++++   
  EHU00330.1 323 GIIGESGSGKTTLAHAIAG-LNPACQEQ--ILFNGHMVAGQMQKRTDNeLRRIQYVFQMADTALNPAHS----VEQILSRPLTLFHGLSGIARQNRL-- 412
                 589*************985.45555555..344444444444444433446666666666666666666....666667777778888888876666.. PP

                 .......HHHH..HCTTTTT--EEEEEEECCCHHHHCTTSSC CS
       NACHT 102 kqpvrtlLsel..irkkllpeasllltvrpralrdleeqlee 141
                      +lL +l  +++++l++ ++ l++  +++ +l++ l+ 
  EHU00330.1 413 ----YQLL-DLvrLPRTVLSRRPWSLSSGQKQRVNLARALAA 449
                 ....4444.441255777777777777777777777666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0    0.0003     0.093      88     122 ..      30      65 ..      12      78 .. 0.80
   2 !    9.6   0.1    0.0026      0.81      96     121 ..     316     341 ..     305     350 .. 0.81
   3 ?    2.4   0.0      0.43   1.3e+02      61     110 ..     360     406 ..     343     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0003
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  + +++++  +++ ++ +l+G+SG GK+t+  al++ 
   EHU00330.1  30 DIVSDIRFTVQKgEVLALIGESGSGKTTIAMALMGY 65 
                  5567888888887****************9999874 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0026
                  HCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallp 121
                  l+k++ + ++G+SG GK+tL  a+++
   EHU00330.1 316 LWKGQAIGIIGESGSGKTTLAHAIAG 341
                  45679999************999876 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.43
                  HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTS CS
  RsgA_GTPase  61 eeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGv 110
                  ++   +++ +el++++y + +   +  + ++++++ l+  ++++ G SG+
   EHU00330.1 360 QM--QKRTDNELRRIQYVFQMA-DTALNPAHSVEQILSRPLTLFHGLSGI 406
                  33..478889999998866666.45588999******************8 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0024      0.74       3      20 ..      46      63 ..      44      78 .. 0.88
   2 ?   -0.3   0.0       3.1   9.6e+02      58      79 ..     170     194 ..     166     271 .. 0.72
   3 !   12.1   0.3   0.00047      0.15       4      94 ..     324     480 ..     322     485 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0024
                EEE--SSSSHHHHHHHGG CS
       AAA_5  3 lLvGppGtgKselaerla 20
                 L+G++G+gK+++a+ l 
  EHU00330.1 46 ALIGESGSGKTTIAMALM 63
                59************9885 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 3.1
                 -------...G-SEEEEESGGG--H CS
       AAA_5  58 plvraar...egeilvlDEveraes 79 
                  l++a+     +e+++lDE ++a +
  EHU00330.1 170 RLMTAMAlisDPEVVILDEPTTALD 194
                 5677777777778888888665543 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00047
                 EE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------...................................... CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar...................................... 64 
                 ++G++G+gK++la  +a +  +  e ++++  + + +++ r++ + ++ ++v + + +a +                                      
  EHU00330.1 324 IIGESGSGKTTLAHAIAGLNPACQEQILFNGHMVAGQMQKRTDNELRRIQYVFQMADTALNpahsveqilsrpltlfhglsgiarqnrlyqlldlvrlp 422
                 69*****************98888888888888888888888766333333333333333333345555688888888888888888888888888888 PP

                 ...........................G-SEEEEESGGG--.HHHHHHHHHHHHSSEE CS
       AAA_5  65 ...........................egeilvlDEverae.sevlnsLlslleerrl 94 
                                            e+++++ DEv+ a  + v++++l l++e r+
  EHU00330.1 423 rtvlsrrpwslssgqkqrvnlaralaaEPDVILCDEVTSALdTVVASAVLDLISELRR 480
                 8888888888888888888888888888888888888888767777777777777665 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   1.0   0.00067      0.21       6      41 ..      34      69 ..      31     270 .. 0.75
   2 !   13.9   0.0    0.0001     0.032       9      39 ..     314     344 ..     306     409 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00067
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslskqsnsd 41
                 D  f++ +G+ ++++g++g Gkt+i+ +l+ ++++ 
   EHU00330.1 34 DIRFTVQKGEVLALIGESGSGKTTIAMALMGYARHG 69
                 8889*************************9997544 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.0001
                  S-EBTT-EEEEEESTTSSHHHHHHHHHHHSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslskqsn 39 
                  +++ +Gq ++i+g++g Gkt+++++++  + 
   EHU00330.1 314 LTLWKGQAIGIIGESGSGKTTLAHAIAGLNP 344
                  6899********************9987643 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0052       1.6       3      26 ..      47      82 ..      45     110 .. 0.76
   2 !   14.0   0.0   0.00018     0.054       1      44 [.     322     363 ..     322     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0052
      AAA_18  3 ltGtpGvGKttlakeL...skrlgf..........gv 26
                l G +G+GKtt+a +L   +++ g+          g+
  EHU00330.1 47 LIGESGSGKTTIAMALmgyARH-GCkiaegnihvaGT 82
                7899************776555.44446555555544 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00018
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44 
                 I++ G +G+GKttla++++ ++       +++++++++ ++ ++
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAGLN--PACQEQILFNGHMVAGQMQK 363
                 89****************9998..66677777777777777777 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00099      0.31      20      39 ..      43      62 ..      32      69 .. 0.80
   2 !   13.1   0.3   0.00033       0.1      18      40 ..     318     340 ..     305     342 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00099
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                 + +++G+ G+GKTTi  A+
  EHU00330.1 43 EVLALIGESGSGKTTIAMAL 62
                577899**********9998 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00033
      AAA_23  18 skgltlItGpNGaGKTTildAik 40 
                 +     I+G+ G+GKTT+  Ai 
  EHU00330.1 318 KGQAIGIIGESGSGKTTLAHAIA 340
                 556678**************995 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   8.7e-05     0.027      30      66 ..      39      76 ..      32      91 .. 0.78
   2 ?    6.0   0.0     0.026       8.1     119     188 ..     157     221 ..     128     222 .. 0.83
   3 ?    5.0   1.5     0.053        16      32      54 ..     318     340 ..     305     495 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.7e-05
      AAA_25 30 lpagelallaGapgtGKttlaldlalavatGkpwlg.p 66
                + +ge+ +l+G +g+GKtt+a+ l+     G++ ++ +
  EHU00330.1 39 VQKGEVLALIGESGSGKTTIAMALMGYARHGCKIAEgN 76
                5799******************9987666666665554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.026
      AAA_25 119 kdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 +++ +++  +++++l+ a+  + ++++v++D  + al+   +      ++++a++r+ ++ g++ + v H
  EHU00330.1 157 DRFPHQVSGGQLQRLMTAMALISDPEVVILDEPTTALDVTTQ-----VEVLKAFRRVVKQRGVTAIYVSH 221
                 45667778889999*****************99999988555.....56889999999999999888888 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.053
      AAA_25  32 agelallaGapgtGKttlaldla 54 
                 +g  + ++G +g+GKttla  +a
  EHU00330.1 318 KGQAIGIIGESGSGKTTLAHAIA 340
                 677778899********987665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1    0.0002     0.063      44      69 ..      39      64 ..      24      88 .. 0.83
   2 ?   -0.8   0.0       3.6   1.1e+03      98     119 ..     170     191 ..     162     227 .. 0.63
   3 !   11.3   0.0   0.00069      0.21      46      80 ..     318     352 ..     305     381 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0002
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgv 69
                ++k e ++l+G sG GK+ +a+al  
  EHU00330.1 39 VQKGEVLALIGESGSGKTTIAMALMG 64
                678899*****************843 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.6
   IstB_IS21  98 klaralkrllkvdllilDdlgl 119
                 +l +a++ +  ++++ilD+  +
  EHU00330.1 170 RLMTAMALISDPEVVILDEPTT 191
                 5666777778889*****9643 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00069
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavraglsvlf 80 
                 k ++i ++G sG GK+ la a++    + + ++lf
  EHU00330.1 318 KGQAIGIIGESGSGKTTLAHAIAGLNPACQEQILF 352
                 568899****************8655444455555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0029       0.9       4      21 ..      44      61 ..      41      73 .. 0.86
   2 !   11.9   0.0   0.00044      0.14       2      22 ..     319     339 ..     318     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0029
      AAA_24  4 kiliyGpsgiGKTtlake 21
                 ++++G+sg+GKTt+a  
  EHU00330.1 44 VLALIGESGSGKTTIAMA 61
                689***********9965 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00044
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 ++ i i+G+sg+GKTtla  +
  EHU00330.1 319 GQAIGIIGESGSGKTTLAHAI 339
                 56799************9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.8    0.0007      0.22       1      33 [.      44     127 ..      44     232 .. 0.52
   2 !   10.6   0.2    0.0015      0.46       4      26 ..     324     346 ..     322     458 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0007
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.avllssdt..................................................l 33 
                 ++ l+G +GsGK+t a  l+     ++ +++ +                                                  +
  EHU00330.1  44 VLALIGESGSGKTTIAMALMGYARhGCKIAEGNihvagtnvmaltpaelrffrgnkvayiaqsaaasfnpgmkiidqviepvvI 127
                 67799**************86555555565555344444455555555555444444444444444444444444444444441 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0015
      AAA_33   4 lvGlpGsGKstlaerllkklgav 26 
                 ++G +GsGK+tla+ ++  ++a+
  EHU00330.1 324 IIGESGSGKTTLAHAIAGLNPAC 346
                 5899**********998777743 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00048      0.15       2      96 ..      42     136 ..      41     149 .. 0.63
   2 !    8.2   0.0    0.0067       2.1       3      45 ..     320     361 ..     318     383 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00048
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT...--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekg...isvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarell 96 
                 g v+ l G sgsGK+tia+al  + ++        + + G nv      +L f + +   ++  +a+ a    + g+ ++  +i P   + +++r++ 
  EHU00330.1  42 GEVLALIGESGSGKTTIAMALMGYARHGCkiaEGNIHVAGTNVMALTPAELRFFRGN---KVAYIAQSAAASFNPGMKIIDQVIEPVVIHGTMTRKAA 136
                 678999**************9754433221113345566777776666777776444...34445555555556666666666666666666666655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0067
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTT CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgL 45 
                   + + G sgsGK+t+a+a++  L+   ++ +l +G  v  ++
  EHU00330.1 320 QAIGIIGESGSGKTTLAHAIA-GLNPACQEQILFNGHMVAGQM 361
                 567789*************98.677777777777777776555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1    0.0017      0.51      16      39 ..      39      62 ..      29      74 .. 0.87
   2 !    9.4   0.0    0.0022      0.67      18      40 ..     318     340 ..     306     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0017
                HHH-SEEEEE--TTSSTTHHHHHH CS
        PhoH 16 lkkndivfaiGpaGtGKtylaval 39
                ++k +++  iG++G+GKt +a+al
  EHU00330.1 39 VQKGEVLALIGESGSGKTTIAMAL 62
                5578899**************985 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0022
                 H-SEEEEE--TTSSTTHHHHHHH CS
        PhoH  18 kndivfaiGpaGtGKtylavala 40 
                 k + + +iG++G+GKt la a+a
  EHU00330.1 318 KGQAIGIIGESGSGKTTLAHAIA 340
                 6677899************9876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0032      0.99       2      26 ..      45      69 ..      44      92 .. 0.78
   2 !   10.2   0.0    0.0021      0.65       3      64 ..     323     382 ..     321     389 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0032
                EEEESSTTSSHHHHHHCHCT-CCC- CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfse 26
                + l+G+sg+GKt+++  ++    + 
  EHU00330.1 45 LALIGESGSGKTTIAMALMGYARHG 69
                579************9999766655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0021
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE- CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDta 64 
                  ++G+sg+GKt+l++ +   +   +e+  +   ++  +++  k ++n+ +  ++ +++ Dta
  EHU00330.1 323 GIIGESGSGKTTLAHAIAGLNPACQEQILFNGHMVAGQMQ--KRTDNELRRIQYVFQMADTA 382
                 68*************9987666655555555555555553..23333333334455666665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00028     0.088       4      31 ..      47      73 ..      44     218 .. 0.85
   2 ?    6.1   0.0     0.036        11       6      21 ..     326     341 ..     323     351 .. 0.86
   3 ?   -1.0   0.0       5.5   1.7e+03      17      44 ..     441     466 ..     440     546 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00028
                EESSTTSSHHHHHHHHHHHHHHTT--EE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  4 astkGGvGKTtlaanLaralarrglrVl 31
                  + +G+GKTt+a +L+ +    g +++
  EHU00330.1 47 LIGESGSGKTTIAMALMGYARH-GCKIA 73
                5689*************96554.87776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.036
                 SSTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLar 21 
                 + +G+GKTtla ++a 
  EHU00330.1 326 GESGSGKTTLAHAIAG 341
                 68*********99886 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 5.5
                 HHHHHHHHHTT--EEEEEEEESSCCCCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  17 anLaralarrglrVllvDaDpqannlai 44 
                 +nLarala  + +V+l D  + + ++++
  EHU00330.1 441 VNLARALAA-EPDVILCD-EVTSALDTV 466
                 578888887.77777777.444444443 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.022       6.7      25      44 ..      45      64 ..      34      71 .. 0.87
   2 !   13.0   0.0   0.00016     0.049      25      71 ..     322     368 ..     310     385 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.022
  Mg_chelatase 25 lllvGppGsGKtmlakrlps 44
                  l l+G +GsGKt +a +l++
    EHU00330.1 45 LALIGESGSGKTTIAMALMG 64
                  789************99875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00016
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeek 71 
                   + ++G +GsGKt la+++++l p+ +e+  ++  ++a  ++k+++++
    EHU00330.1 322 IGIIGESGSGKTTLAHAIAGLNPACQEQILFNGHMVAGQMQKRTDNE 368
                   5589*********************9999988888887777555544 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1     0.011       3.5       1      24 [.      44      67 ..      44     109 .. 0.76
   2 !   11.3   0.0    0.0007      0.22       2      20 ..     322     340 ..     321     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                v+++ g+SG+Gktt+a +l    +
  EHU00330.1 44 VLALIGESGSGKTTIAMALMGYAR 67
                67899**********998876544 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0007
         PRK   2 IgvagsSGaGkttvarkle 20 
                 Ig+ g+SG+Gktt+a+++ 
  EHU00330.1 322 IGIIGESGSGKTTLAHAIA 340
                 9**************9986 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0043       1.3       1      30 [.      44      72 ..      44      83 .. 0.82
   2 !    8.6   0.0    0.0052       1.6       2      18 ..     322     338 ..     321     345 .. 0.87
   3 ?   -0.8   0.0       4.2   1.3e+03      18      41 ..     473     497 ..     469     513 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0043
        MobB  1 vlgivgksgsGKTtLleklipelkarglrv 30
                vl+++g sgsGKTt+   l+   +++g+++
  EHU00330.1 44 VLALIGESGSGKTTIAMALMGY-ARHGCKI 72
                689************9998865.4556665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0052
        MobB   2 lgivgksgsGKTtLlek 18 
                 +gi+g sgsGKTtL + 
  EHU00330.1 322 IGIIGESGSGKTTLAHA 338
                 89************875 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 4.2
        MobB  18 klipelkar.glrvgtiKhahhgfd 41 
                  li+el+++ gl+v  i h+ h++ 
  EHU00330.1 473 DLISELRRElGLSVIFISHDMHAVR 497
                 58888876449*********99875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.035        11       3      25 ..      46      71 ..      44      86 .. 0.81
   2 !    8.3   0.0    0.0085       2.6       2      22 ..     322     342 ..     321     382 .. 0.84
   3 ?    3.0   0.0      0.36   1.1e+02      62      93 ..     438     473 ..     422     545 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.035
      AAA_28  3 vitGgestGKTtlleaLa...argyp 25
                +++G +++GKTt++ aL    ++g +
  EHU00330.1 46 ALIGESGSGKTTIAMALMgyaRHGCK 71
                799*************9866444655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0085
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 i i+G +++GKTtl+ a+a  
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAGL 342
                 669**************9954 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.36
      AAA_28  62 eqleeeaaa..aankvlfcD..rglldtlaYarayg 93 
                 +q+ ++a+a  a+++v++cD  +++ldt++ + +++
  EHU00330.1 438 KQRVNLARAlaAEPDVILCDevTSALDTVVASAVLD 473
                 4444454445599*******8889999999887664 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.2    0.0075       2.3      21      38 ..      43      60 ..      35      66 .. 0.87
   2 !   10.0   0.0    0.0011      0.35      22      41 ..     321     340 ..     308     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0075
                EEEEEEESTTSSHHHHHH CS
      NB-ARC 21 lvvalvGmgGvGKttlak 38
                 v+al G  G+GKtt+a 
  EHU00330.1 43 EVLALIGESGSGKTTIAM 60
                489*************96 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
                 EEEEEESTTSSHHHHHHHHC CS
      NB-ARC  22 vvalvGmgGvGKttlakqil 41 
                  +++ G  G+GKttla+ i 
  EHU00330.1 321 AIGIIGESGSGKTTLAHAIA 340
                 689*************9986 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0082       2.5      17      44 ..      37      64 ..      24      92 .. 0.77
   2 !    9.9   0.1    0.0019      0.58      16      47 ..     313     344 ..     305     362 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0082
                     HHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat 17 kvaktdlsvlitGesGtGKellaraihe 44
                      ++++   + + GesG+GK+++a a+  
       EHU00330.1 37 FTVQKGEVLALIGESGSGKTTIAMALMG 64
                     555555556689***********99854 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0019
                      HHHCTSSS-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  16 kkvaktdlsvlitGesGtGKellaraiheask 47 
                      + +  +   + i GesG+GK++la+ai   ++
       EHU00330.1 313 NLTLWKGQAIGIIGESGSGKTTLAHAIAGLNP 344
                      555555667889**************977655 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0088       2.7       5      23 ..      46      64 ..      42      76 .. 0.88
   2 !   10.0   0.0    0.0017      0.54       4      24 ..     322     342 ..     320     352 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0088
   PduV-EutP  5 lliGkvgsGKttLtqalkg 23
                 liG++gsGKtt++ al g
  EHU00330.1 46 ALIGESGSGKTTIAMALMG 64
                59***********999976 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0017
   PduV-EutP   4 illiGkvgsGKttLtqalkge 24 
                 i +iG++gsGKttL++a+ g 
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAGL 342
                 558**************9885 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0041       1.3      49      70 ..      41      62 ..      28      84 .. 0.84
   2 !    9.2   0.0     0.002      0.63      48      71 ..     317     340 ..     306     368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0041
                XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 49 aGravLlaGpsgtGktalaiai 70
                 G ++ l G+sg+Gkt +a+a+
  EHU00330.1 41 KGEVLALIGESGSGKTTIAMAL 62
                588999**************97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.002
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  48 laGravLlaGpsgtGktalaiais 71 
                   G+a+ + G+sg+Gkt la ai+
  EHU00330.1 317 WKGQAIGIIGESGSGKTTLAHAIA 340
                 5699*****************998 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.12        38      36      53 ..      43      60 ..      33      95 .. 0.83
   2 ?    2.7   0.1      0.24        74     115     172 ..     176     231 ..     153     235 .. 0.76
   3 ?    5.4   0.0     0.035        11      37      81 ..     321     365 ..     316     404 .. 0.77
   4 ?    3.1   0.0      0.18        55     108     160 ..     437     489 ..     406     502 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.12
        TniB 36 pnlllvGdsnnGKtmive 53
                + l l+G+s  GKt+i+ 
  EHU00330.1 43 EVLALIGESGSGKTTIAM 60
                5689***********986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
        TniB 115 lrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealralrtD 172
                     +++v+i+DE   +l   +++q e+l a ++   +  ++ ++v  + a+ a  +D
  EHU00330.1 176 ALISDPEVVILDEPTTAL--DVTTQVEVLKAFRRVVKQRGVTAIYVSHDLAVVAQMAD 231
                 444578999****99999..88999999*99999999999999999887777665555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.035
        TniB  37 nlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkp 81 
                  + ++G+s  GKt++++  a l+p+ +++   +  +++ q+ ++ 
  EHU00330.1 321 AIGIIGESGSGKTTLAHAIAGLNPACQEQILFNGHMVAGQMQKRT 365
                 5679**************999999998876666666666666555 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.18
        TniB 108 eqqvlrllr..elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 ++q ++l r  + ++ v++ DE+ ++l        ++l ++  L +el ++++ +
  EHU00330.1 437 QKQRVNLARalAAEPDVILCDEVTSALD--TVVASAVLDLISELRRELGLSVIFI 489
                 4444444441145778***********5..555689***************9987 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         2   6.1e+02     199     220 ..      11      32 ..       4      41 .. 0.84
   2 !    7.4   0.2    0.0078       2.4      17      38 ..      40      61 ..      27      80 .. 0.84
   3 ?    3.0   0.1      0.17        53     110     163 ..     170     221 ..     163     256 .. 0.74
   4 !    7.7   0.1    0.0064         2      16      37 ..     316     337 ..     307     343 .. 0.88
   5 ?    0.5   0.1         1   3.2e+02     126     192 ..     457     518 ..     442     535 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2
      ATPase 199 tleivkmRgtkhskkehpfeIt 220
                 +++++k+R t+h+ +  +++I 
  EHU00330.1  11 VISVDKLRVTAHNDNGDELDIV 32 
                 799*********9988777775 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0078
      ATPase 17 pegrvvlitGepGtGKtifalq 38
                 +g+v  + Ge+G+GKt++a+ 
  EHU00330.1 40 QKGEVLALIGESGSGKTTIAMA 61
                578999************9975 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.17
      ATPase 110 elaeaikeika.krvviDsitglayeekeavaReilrqlvrvlkklgvTailvse 163
                 +l++a++ i   + v++D  t+     +  +  e l+ + rv+k++gvTai vs 
  EHU00330.1 170 RLMTAMALISDpEVVILDEPTTA-L--DVTTQVEVLKAFRRVVKQRGVTAIYVSH 221
                 56666666665466777776666.2..2222234555666667********9986 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0064
      ATPase  16 ipegrvvlitGepGtGKtifal 37 
                 + +g+++ i Ge+G+GKt++a 
  EHU00330.1 316 LWKGQAIGIIGESGSGKTTLAH 337
                 568999*************985 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1
      ATPase 126 DsitglayeekeavaReilrqlvrvl.kklgvTailvsekssseeaaggygveefivdgvivLdlkei 192
                 D +t+      + v+ + +  l+++l ++lg+  i++s  ++++ +a   ++   + +g+iv +l ++
  EHU00330.1 457 DEVTSA----LDTVVASAVLDLISELrRELGLSVIFISH-DMHAVRAVCDEIVV-MRNGAIVTQLARE 518
                 555555....44566677888888888999999999998.44444444444444.4566666555544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0045       1.4      28      54 ..      37      63 ..      27      80 .. 0.85
   2 !    8.3   0.0    0.0049       1.5      25      88 ..     311     371 ..     304     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0045
       AAA_7 28 lllknkkpvllvGptGtGKtviikdll 54
                  ++++  + l+G++G+GKt+i++ l+
  EHU00330.1 37 FTVQKGEVLALIGESGSGKTTIAMALM 63
                5678888999************99876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0049
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklek 88 
                  ++l l +++ + ++G++G+GKt++++ +    +       +i f+ ++ a q+q+  +++l +
  EHU00330.1 311 NINLTLWKGQAIGIIGESGSGKTTLAHAIAGLNP---ACQEQILFNGHMVAGQMQKRTDNELRR 371
                 5677888899999***********9988654433...566677788888888888777777765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0035       1.1      18      41 ..      39      64 ..      23      73 .. 0.78
   2 ?    7.8   0.0      0.01       3.2      18      40 ..     316     340 ..     305     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0035
                H..TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrglak 41
                +  g+v++L G+ G+GKTt++ +l+ 
  EHU00330.1 39 VqkGEVLALIGESGSGKTTIAMALMG 64
                233789**************988875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.01
                 H..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrgla 40 
                 l  g++i + G+ G+GKTtl++++a
  EHU00330.1 316 LwkGQAIGIIGESGSGKTTLAHAIA 340
                 2447789999***********9987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0016      0.49      25      43 ..      44      62 ..      32      68 .. 0.85
   2 ?    6.3   0.0     0.022         7      27      43 ..     323     339 ..     307     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0016
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +  liG+ +sGK++i++al
  EHU00330.1 44 VLALIGESGSGKTTIAMAL 62
                889**************98 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
      AAA_15  27 vliGkNnsGKSsileal 43 
                  +iG+ +sGK+++++a+
  EHU00330.1 323 GIIGESGSGKTTLAHAI 339
                 59**************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.047        15       3      22 ..      46      65 ..      44      96 .. 0.83
   2 !    9.4   0.0    0.0035       1.1       2      22 ..     322     342 ..     321     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.047
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a++G + +GK+t+  al+g 
  EHU00330.1 46 ALIGESGSGKTTIAMALMGY 65
                89***************983 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0035
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 ++i+G + +GK+tL  a+ g 
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAGL 342
                 89***************9983 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00034      0.11       2      45 ..     243     286 ..     242     295 .. 0.85
   2 ?    2.1   0.0      0.93   2.9e+02      17      33 ..     528     544 ..     521     553 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00034
   oligo_HPY   2 ErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapsl 45 
                 E+g+++ l+  p+  YT++L++++ + +r+  + +  ++e p+l
  EHU00330.1 243 EYGTTAHLIGAPQSDYTRLLMAAAQQKERPSNWCPAKANELPLL 286
                 99***********************9999998666666666655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.93
   oligo_HPY  17 YTkaLlrsvprldrekd 33 
                 Y + L r+vp+l++++ 
  EHU00330.1 528 YFERLKRAVPELRQGWL 544
                 9999**********998 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.3     0.011       3.4       9      40 ..      41      72 ..      34     217 .. 0.81
   2 ?    7.9   0.0     0.012       3.6      10      77 ..     319     405 ..     312     489 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.011
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvelggv 40
                k +vl++++  G+GKT++ ++ + ++ +  ++
  EHU00330.1 41 KGEVLALIGESGSGKTTIAMALMGYARHGCKI 72
                67899************999888776655554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.012
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.........................atTiHrlal 77 
                  + + +++  G+GKT++  h++a l+ + ++   +il     +  a ++++r+++ +++                          t +H+l+ 
  EHU00330.1 319 GQAIGIIGESGSGKTTL-AHAIAGLNPACQE---QILF--NGHMVAGQMQKRTDNELRRiqyvfqmadtalnpahsveqilsrpLTLFHGLSG 405
                 677899********975.5566655555433...2322..22233444444443333333333333344444444444444443444444444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.018       5.6     119     153 ..      32      66 ..       7      79 .. 0.77
   2 !    6.8   0.0      0.01       3.1     127     161 ..     317     351 ..     257     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.018
       T2SSE 119 aevlrkavrerglilvsGgTgsGKttllyallkei 153
                  + +r  v++  ++ + G  gsGKtt++ al+ + 
  EHU00330.1  32 VSDIRFTVQKGEVLALIGESGSGKTTIAMALMGYA 66 
                 45577788888889999***********9998765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.01
       T2SSE 127 rerglilvsGgTgsGKttllyallkeinksderiv 161
                  + + i + G  gsGKttl+ a+    ++++e+i+
  EHU00330.1 317 WKGQAIGIIGESGSGKTTLAHAIAGLNPACQEQIL 351
                 5556677889************9998888888775 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1      0.03       9.2       3      20 ..      47      64 ..      45      84 .. 0.82
   2 ?    7.3   0.0     0.019         6       3      19 ..     324     340 ..     322     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.03
  RNA_helicase  3 lyGpsgeGKStlakeLak 20
                  l G+sg GK+t+a  L+ 
    EHU00330.1 47 LIGESGSGKTTIAMALMG 64
                  78***********99875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.019
  RNA_helicase   3 lyGpsgeGKStlakeLa 19 
                   + G+sg GK+tla+ +a
    EHU00330.1 324 IIGESGSGKTTLAHAIA 340
                   78***********9965 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1      0.05        16       2      30 ..      44      73 ..      43      74 .. 0.84
   2 ?    6.3   0.0     0.021       6.4       2      22 ..     321     341 ..     320     373 .. 0.78
   3 ?    0.1   0.0       1.7   5.3e+02      39      65 ..     489     515 ..     471     532 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.05
                EEEEEESTTCCHHHHHHHHH.CT--SS-EE CS
        cobW  2 vtvltGflGsGKTtLlnhll.enraglkla 30
                v+ l G  GsGKTt+  +l+   r+g k+a
  EHU00330.1 44 VLALIGESGSGKTTIAMALMgYARHGCKIA 73
                56789999*******999998777887776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.021
                 EEEEEESTTCCHHHHHHHHHC CS
        cobW   2 vtvltGflGsGKTtLlnhlle 22 
                 ++++ G  GsGKTtL  ++  
  EHU00330.1 321 AIGIIGESGSGKTTLAHAIAG 341
                 5789999********888873 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.7
                 CHCCCCCCHCCCT.EEEETTTTECCHC CS
        cobW  39 vsiDaellretgveivelenGciCctl 65 
                 +s+D + +r+ ++eiv + nG i  +l
  EHU00330.1 489 ISHDMHAVRAVCDEIVVMRNGAIVTQL 515
                 689999*****9*********997774 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.6     0.015       4.5      16      47 ..      40      89 ..      34     223 .. 0.59
   2 !    8.1   0.0    0.0063       1.9      20     112 ..     321     475 ..     312     493 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa.g.................g 47
                ++  v +l G  G+GKtt+  al   +++  +                  
  EHU00330.1 40 QKGEVLALIGESGSGKTTIAMALMGYARHGcKiaegnihvagtnvmaltP 89
                4446999***********98888766655433555455554444444440 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0063
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk..................................... 81 
                    + G  G+GKtt+  a++ +  a +++++     + +A ++++ ++ e ++i+ + +  +                                     
  EHU00330.1 321 AIGIIGESGSGKTTLAHAIAGLNPACQEQILF--NGHMVAGQMQKRTDNELRRIQYVFQMADtalnpahsveqilsrpltlfhglsgiarqnrlyqlld 417
                 56789**********99999888877655543..45556666666555555555544444334444444444444445566666666666666666666 PP

      AAA_30  82 ..........................grarlepg.tllivDEagmv.dtkqlaallkaa 112
                                           +ra l+++ ++++ DE+  + dt  + a+l+ +
  EHU00330.1 418 lvrlprtvlsrrpwslssgqkqrvnlARA-LAAEpDVILCDEVTSAlDTVVASAVLDLI 475
                 66677777777777777776666665333.33333677777754433666666666655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.13        39       3      23 ..      46      66 ..      44      83 .. 0.79
   2 ?    7.8   0.0     0.009       2.8       2      21 ..     322     341 ..     321     383 .. 0.75
   3 ?   -0.6   0.0       3.6   1.1e+03      90     104 ..     445     459 ..     433     525 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.13
                EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlell 23
                ++ G++G+GKtT+   ++   
  EHU00330.1 46 ALIGESGSGKTTIAMALMGYA 66
                678**********98777655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.009
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 + i G++G+GKtTl + ++ 
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAG 341
                 6788************9975 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 3.6
                 HHHHHHH-EEEE--- CS
    NTPase_1  90 rkalseadviviDEi 104
                 r    e+dvi+ DE+
  EHU00330.1 445 RALAAEPDVILCDEV 459
                 333488999999998 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.5     0.037        11      13      36 ..      41      64 ..      31     243 .. 0.71
   2 ?    5.9   0.0     0.032       9.8       8      64 ..     312     460 ..     308     522 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.037
                TTCEEEEEESTTSSHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 13 gggdvlvaaeTGsGKTlaflipvl 36
                +g+ + + +e GsGKT++++  + 
  EHU00330.1 41 KGEVLALIGESGSGKTTIAMALMG 64
                455666899********9987664 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.032
                 HHHHH.TTCEEEEEESTTSSHHHHH.HHHHHHHHHHS............TTSTS............................................. CS
                 xxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx............xxxxx............................................. RF
        DEAD   8 iplil.gggdvlvaaeTGsGKTlaf.lipvlqivyet............kgktg............................................. 47 
                 i+l+l +g+ + + +e GsGKT+ + +i+ l+   ++                +                                             
  EHU00330.1 312 INLTLwKGQAIGIIGESGSGKTTLAhAIAGLNPACQEqilfnghmvagqM---Qkrtdnelrriqyvfqmadtalnpahsveqilsrpltlfhglsgia 407
                 66666678888899*******97651344443332222333333333321...0333445555555555555555555555555555555555555555 PP

                 ....................................-EEEEEESSHHHHHHHH CS
                 ....................................xxxxxxxxxxxxxxxxx RF
        DEAD  48 ....................................pkalivePtreLaeqtl 64 
                                                      +al  eP   L+ ++ 
  EHU00330.1 408 rqnrlyqlldlvrlprtvlsrrpwslssgqkqrvnlARALAAEPDVILCDEVT 460
                 55555555555555555555555555555555555555555555555555555 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.026       7.9      50      79 ..      39      68 ..      12      77 .. 0.80
   2 ?    5.2   0.0      0.04        12      51      75 ..     317     340 ..     302     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
                EETTSEEEEEESTTSSHHHHHHHHHHHHHH CS
        RecA 50 lpkGriieiyGpessGkttlalhaiaeaqk 79
                + kG ++ + G   sGktt+a+ ++  a++
  EHU00330.1 39 VQKGEVLALIGESGSGKTTIAMALMGYARH 68
                679******************999876655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.04
                 ETTSEEEEEESTTSSHHHHHHHHHH CS
        RecA  51 pkGriieiyGpessGkttlalhaia 75 
                  kG+ i i G   sGkttla haia
  EHU00330.1 317 WKGQAIGIIGESGSGKTTLA-HAIA 340
                 699****************9.5666 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.046        14       1      22 [.      42      63 ..      42      72 .. 0.87
   2 ?    5.6   0.0     0.042        13       6      40 ..     324     358 ..     319     393 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.046
                --EEEEEE-TTSSHHHHHHHHH CS
         CPT  1 ariilLnGgsssGKsslaralq 22
                ++++ L G s sGK+++a al 
  EHU00330.1 42 GEVLALIGESGSGKTTIAMALM 63
                5788899************996 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.042
                 EEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH CS
         CPT   6 LnGgsssGKsslaralqevldepwlhlgvDafvea 40 
                 + G s sGK++la+a+  + +++  ++     + a
  EHU00330.1 324 IIGESGSGKTTLAHAIAGLNPACQEQILFNGHMVA 358
                 5699************9999998777766666555 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0064         2      16      34 ..      45      63 ..      38      69 .. 0.87
   2 ?    4.2   0.1     0.083        26      16      29 ..     322     335 ..     315     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0064
     Pox_A32 16 lalvGgsGsGktvyLlsLl 34
                lal+G+sGsGkt+  ++L+
  EHU00330.1 45 LALIGESGSGKTTIAMALM 63
                89**********9887775 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.083
     Pox_A32  16 lalvGgsGsGktvy 29 
                 + ++G+sGsGkt+ 
  EHU00330.1 322 IGIIGESGSGKTTL 335
                 679*********85 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.049        15      35      58 ..      40      63 ..      27     119 .. 0.84
   2 ?    5.5   0.0     0.028       8.8      40      58 ..     322     340 ..     315     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.049
                ESSSEEEEEESTTSSHHHHHHHHH CS
       Rad51 35 etgsiteifGefrsGktqlchtlc 58
                + g +  ++Ge++sGkt +++ l 
  EHU00330.1 40 QKGEVLALIGESGSGKTTIAMALM 63
                567778899************986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.028
                 EEEEESTTSSHHHHHHHHH CS
       Rad51  40 teifGefrsGktqlchtlc 58 
                   i+Ge++sGkt l+h ++
  EHU00330.1 322 IGIIGESGSGKTTLAHAIA 340
                 5699************987 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.11        35       2      20 ..      48      66 ..      47      73 .. 0.85
   2 ?    6.8   0.0     0.016         5       1      23 [.     324     346 ..     324     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.11
  ATP_bind_1  2 vGpaGsGKttfvgalseil 20
                +G  GsGKtt+  al+ ++
  EHU00330.1 48 IGESGSGKTTIAMALMGYA 66
                899********99988765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.016
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 ++G  GsGKtt+ +a++ + +++
  EHU00330.1 324 IIGESGSGKTTLAHAIAGLNPAC 346
                 79***********9998777766 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.02         6      42      60 ..      45      63 ..      26      66 .. 0.84
   2 ?    3.1   0.1      0.16        50      42      58 ..     322     338 ..     302     340 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                  EEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLi 60
                  l ++G +gsGK+t  ++L+
    EHU00330.1 45 LALIGESGSGKTTIAMALM 63
                  5789*************98 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
                   EEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalnt 58 
                   + ++G +gsGK+t  ++
    EHU00330.1 322 IGIIGESGSGKTTLAHA 338
                   5599*********8776 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.049        15      18      42 ..      39      63 ..      30      81 .. 0.81
   2 ?    4.4   0.1      0.12        38      25      43 ..     323     341 ..     306     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.049
                     HT-SS-EEEEEETT--HHHHHHCC- CS
  Sigma54_activ_2 18 aqsklpvfltGekGsgkelvArlLh 42
                     +q+  ++ l+Ge Gsgk+++A +L 
       EHU00330.1 39 VQKGEVLALIGESGSGKTTIAMALM 63
                     56667788*************9986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.12
                      EEEEETT--HHHHHHCC-- CS
  Sigma54_activ_2  25 fltGekGsgkelvArlLhk 43 
                       ++Ge Gsgk++ A +++ 
       EHU00330.1 323 GIIGESGSGKTTLAHAIAG 341
                      59************99974 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.031       9.6      18      41 ..      44      67 ..      30     138 .. 0.72
   2 ?    4.7   0.4     0.051        16      19      37 ..     322     340 ..     310     351 .. 0.87
   3 ?   -1.4   0.0       3.7   1.2e+03      98     147 ..     350     399 ..     347     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.031
  Zeta_toxin 18 lillgGqpGAGKselaellkdele 41
                ++ l G +G+GK+++a +l  + +
  EHU00330.1 44 VLALIGESGSGKTTIAMALMGYAR 67
                5567799*********99877664 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.051
  Zeta_toxin  19 illgGqpGAGKselaellk 37 
                 i + G +G+GK++la++++
  EHU00330.1 322 IGIIGESGSGKTTLAHAIA 340
                 556799*********9986 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.7
  Zeta_toxin  98 iivegtlrspdvvkklaealkkaGYevevvvvavkkelSrlgvldRyeee 147
                 i++ g +   +  k++ ++l+   Y  + +  a ++++S++++l+R ++ 
  EHU00330.1 350 ILFNGHMVAGQMQKRTDNELRRIQYVFQMADTALNPAHSVEQILSRPLTL 399
                 66667777777777788888888888999999999999999999997765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.26        82       1      20 [.      45      64 ..      45      69 .. 0.91
   2 ?    6.3   0.1      0.03       9.4       1      36 [.     322     357 ..     322     493 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.26
                EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlg 20
                +a++G+  sGK++++ aL+g
  EHU00330.1 45 LALIGESGSGKTTIAMALMG 64
                589***************99 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.03
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36 
                 i ++G+  sGK++++ a+ g +    ++++    ++
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAGLNPACQEQILFNGHMV 357
                 789***************998765566555555555 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.19        57       2      23 ..      44      65 ..      43      80 .. 0.81
   2 ?   -1.0   0.1         4   1.2e+03     128     155 ..     197     224 ..     154     235 .. 0.66
   3 ?    6.3   0.0     0.022       6.8       3      53 ..     322     377 ..     320     387 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.19
                EEEEEESTTSSHHHHHHHHHHT CS
        CoaE  2 ivgltGgiasGKstvanlfadl 23
                +++l G  +sGK+t+a ++  +
  EHU00330.1 44 VLALIGESGSGKTTIAMALMGY 65
                67899***********988654 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4
                 EE--HHHHHHHHHHCCTSTHHHHHHHHH CS
        CoaE 128 vdvelelqveRlvardgvseeevkaiia 155
                  +ve+ +  +R+v+++gv++  v + +a
  EHU00330.1 197 TQVEVLKAFRRVVKQRGVTAIYVSHDLA 224
                 3455556677888888888777766555 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.022
                 EEEEESTTSSHHHHHHHHHH.....TT-EEEEHHHHHHHTTCCTHHHHHHHHHHHG CS
        CoaE   3 vgltGgiasGKstvanlfad.....lgvpivDaDlvArqvvepgsealkkiveeFg 53 
                 +g+ G  +sGK+t+a+++a      +   +    +vA q+ +   ++l++i   F+
  EHU00330.1 322 IGIIGESGSGKTTLAHAIAGlnpacQEQILFNGHMVAGQMQKRTDNELRRIQYVFQ 377
                 9**************99875211212334567888888888888888888877775 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.024       7.4      26      41 ..      45      60 ..      24      82 .. 0.83
   2 ?    4.0   0.0     0.076        23      27      46 ..     323     342 ..     310     490 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.024
                EEEEESTTSSHHHHHH CS
     G-alpha 26 llllGqseSGKsTilk 41
                l l+G+s+SGK+Ti  
  EHU00330.1 45 LALIGESGSGKTTIAM 60
                89***********965 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.076
                 EEEESTTSSHHHHHHHHHHH CS
     G-alpha  27 lllGqseSGKsTilkqlkll 46 
                  ++G+s+SGK+T+   +  l
  EHU00330.1 323 GIIGESGSGKTTLAHAIAGL 342
                 579**********9888755 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.03       9.3      29      49 ..      47      67 ..      21      92 .. 0.83
   2 ?    2.3   0.0      0.49   1.5e+02      26      44 ..     321     339 ..     305     370 .. 0.76
   3 ?   -1.7   0.0       8.3   2.6e+03     126     141 ..     444     459 ..     430     484 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.03
                EEESTTSTHHHHHHHHHHHH- CS
      ResIII 29 ikmaTGtGKTlvaaklierll 49
                +  + G+GKT +a++l+ + +
  EHU00330.1 47 LIGESGSGKTTIAMALMGYAR 67
                77789***********98766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.49
                 EEEEEESTTSTHHHHHHHH CS
      ResIII  26 rglikmaTGtGKTlvaakl 44 
                  + i  + G+GKT +a ++
  EHU00330.1 321 AIGIIGESGSGKTTLAHAI 339
                 45577899*****877554 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 8.3
                 .HHHTTT-SEEEEETG CS
      ResIII 126 eellrdrfdviiiDEa 141
                  ++l  + dvi++DE+
  EHU00330.1 444 ARALAAEPDVILCDEV 459
                 456677888*****97 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.23        71      23      54 ..      49      78 ..      46      97 .. 0.76
   2 ?    5.3   0.0      0.02       6.2      22      46 ..     325     349 ..     323     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.23
      AAA_13 23 GwNGaGKTtLSrllrslelgetepkfangsie 54
                G  G+GKTt++++l    ++    k a+g+i+
  EHU00330.1 49 GESGSGKTTIAMALMGYARHG--CKIAEGNIH 78
                788**********99886543..455666664 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.02
      AAA_13  22 YGwNGaGKTtLSrllrslelgetep 46 
                  G  G+GKTtL+ +++ l+   +e+
  EHU00330.1 325 IGESGSGKTTLAHAIAGLNPACQEQ 349
                 5889************996554444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.13        39      26      43 ..      45      62 ..      34      65 .. 0.90
   2 ?    6.6   0.5     0.024       7.3      26      43 ..     322     339 ..     313     342 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.13
       DUF87 26 lAilgsTGsGKSntvavL 43
                lA +g++GsGK++ +  L
  EHU00330.1 45 LALIGESGSGKTTIAMAL 62
                699**********98776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.024
       DUF87  26 lAilgsTGsGKSntvavL 43 
                 ++i+g++GsGK++++  +
  EHU00330.1 322 IGIIGESGSGKTTLAHAI 339
                 79************9876 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   6.4e+02     242     264 ..      39      62 ..      28      67 .. 0.90
   2 ?    2.6   0.1      0.15        46     378     427 ..     203     252 ..     177     270 .. 0.82
   3 ?    0.2   0.8      0.78   2.4e+02     248     265 ..     323     340 ..     314     342 .. 0.84
   4 ?    9.0   0.6    0.0018      0.55     329     413 ..     439     508 ..     431     534 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
                 E-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAl 264
                 ++kG v +++G    GK+T+  Al
  EHU00330.1  39 VQKGeVLALIGESGSGKTTIAMAL 62 
                 788889999**********99998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHHHHHHH CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvtekakeia 427
                 +  r+++k+ gv+ i v+  +    ++Ad+++++ + k+ +  + a+ i 
  EHU00330.1 203 KAFRRVVKQRGVTAIYVSHDLAVVAQMADRILVLLQGKIAEYGTTAHLIG 252
                 4556778999***********************99988888777776665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.78
                 EEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 248 lIvGggfhGKsTLLeAle 265
                  I+G    GK+TL +A++
  EHU00330.1 323 GIIGESGSGKTTLAHAIA 340
                 599*************96 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 329 qAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                 q +n+++al a+ +++L DE tsA   ++     +           +++d++ el+++lg+s+i ++  + +  +v d++++m++
  EHU00330.1 439 QRVNLARALAAEPDVILCDEVTSALDTVV-----A----------SAVLDLISELRRELGLSVIFISHDMHAVRAVCDEIVVMRN 508
                 55677777777777777777777755444.....2..........34589*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 3490.37
//
Query:       EHU00331.1  [L=282]
Description: binding-protein-dependent transport systems inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-24   84.3  11.4    8.6e-24   84.3  11.4    2.7  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.046   13.7   0.1      0.046   13.7   0.1    3.6  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.6      0.11   9.5e+02      27      54 ..      22      50 ..       9      56 .. 0.66
   2 !    3.2   0.4    0.0071        64     106     132 ..      69      95 ..      62      97 .. 0.89
   3 !   84.3  11.4   9.6e-28   8.6e-24       1     177 [.      95     271 ..      95     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.11
  BPD_transp_1 27 llslPsfvlaillvlvf.vilsilghlil 54
                  + +l  +v+a++ ++++   l+++g++ l
    EHU00331.1 22 IVTLFWLVIALFGTWWApHSLDDIGSGPL 50
                  45566666666666666655556665555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0071
  BPD_transp_1 106 alppiitglilafggllggavlleflg 132
                   +l+ i+ g+ +++g++lg+a+l++++g
    EHU00331.1  69 MLTRIMYGAKFSLGLALGAAILASLIG 95 
                   6778999******************99 PP

  == domain 3  score: 84.3 bits;  conditional E-value: 9.6e-28
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g++l+++aa   +++l +ll ++ +++l lP  +la+++v       ++g++  + +i+++++++++ +r+ ++ a + +++d+v+a+r++G srw 
    EHU00331.1  95 GTMLALIAA-VTGRWLEELLGRINDAMLVLPGKILALMIV------AVFGSSLPMlLITAVFTYWPGAFRIAFALASSLRNMDYVRASRLRGESRWY 184
                   7899*****.******************************......99**8888879**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqr 177
                   i  + +lPn++ p+++ ++l+f++++   + l+flg    lg +   a +g  + e++            ++la++ +++++nl++d lq 
    EHU00331.1 185 IAIHDILPNMVHPVLADFGLRFVYIVLLLSGLSFLG----LGVQPPYADWGTLVRENIqglfdgspavLMPALAIASLTIAVNLFIDSLQS 271
                   ************************************....************************999888899999999999999998886 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.2e-06     0.046      18      40 ..      19      41 ..      17      59 .. 0.89
   2 ?   -1.4   0.7      0.27   2.4e+03      20      26 ..      92      98 ..      81     110 .. 0.48
   3 ?   -0.3   0.7      0.12   1.1e+03      23      34 ..     127     141 ..     126     160 .. 0.73
   4 ?   -1.3   0.0      0.25   2.2e+03      21      37 ..     208     224 ..     204     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-06
      OppC_N 18 vglvilllllliaifaPliaPyd 40
                +gl++ l+ l+ia+f+ ++aP++
  EHU00331.1 19 LGLIVTLFWLVIALFGTWWAPHS 41
                69*******************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.27
      OppC_N 20 lvillll 26
                  i   l
  EHU00331.1 92 SLIGTML 98
                2222222 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.12
      OppC_N  23 lllllliaifa...P 34 
                 +l+l ++a+f+   P
  EHU00331.1 127 ILALMIVAVFGsslP 141
                 566777788873334 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.25
      OppC_N  21 villlllliaifaPlia 37 
                  i+lll  +++++  + 
  EHU00331.1 208 YIVLLLSGLSFLGLGVQ 224
                 46777777888886553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2064.47
//
Query:       EHU00332.1  [L=317]
Description: binding-protein-dependent transport systems inner membrane component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-34  117.1  13.0    7.6e-34  117.1  13.0    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4     0.063   1.1e+03      51      65 ..      15      29 ..       3      49 .. 0.53
   2 !  117.1  13.0   4.2e-38   7.6e-34       2     184 ..     118     316 ..     117     317 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.063
  BPD_transp_1 51 hlilpviillllsaa 65
                   +il ++i++++ ++
    EHU00332.1 15 AGILTLLIVSAVVFF 29
                  333332222222222 PP

  == domain 2  score: 117.1 bits;  conditional E-value: 4.2e-38
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilpviillllsaapyvrlirraalrslpk 81 
                   +++Gi aa+nr++kld++l + + ++ ++P f++a + vl+f                  + s+++ ++lpvi+l+    a ++r++r+a++++l++
    EHU00332.1 118 LIIGIAAAMNRGSKLDRALVIGTMATVAVPEFLVATVAVLIFavklhwvsamslgspnmDFASYIKAYALPVITLCCGLVAQMARMTRAAIINQLDS 214
                   789**********************************999999****************************************************** PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrl 178
                    + e a+++G+s+ + + +++lPna+ pi+  + l++ +l+gg +++e+++s+pGl +++++a +++d++  +   v  ++ ++lll+l+adi++ +
    EHU00332.1 215 PYLEMALLKGVSPMRAVLRHALPNAVGPIANAISLSLSYLFGGVIIIETIFSYPGLASQMVDAVSNRDLPVVQ-LCVMLFAGCYLLLLLAADIVTIA 310
                   *************************************************************************.*********************** PP

  BPD_transp_1 179 ldprvr 184
                   ++p+ r
    EHU00332.1 311 FNPKWR 316
                   **9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2347.23
//
Query:       EHU00333.1  [L=535]
Description: extracellular solute-binding protein family 5 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-68  230.4   0.0      4e-68  230.1   0.0    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
       0.16   12.1   0.0        0.5   10.5   0.0    1.8  2  MG4        Macroglobulin domain MG4


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.1   0.0   4.5e-72     4e-68       1     337 [.     105     427 ..     105     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: 230.1 bits;  conditional E-value: 4.5e-72
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHH CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpas 99 
                 +v+paLAes+ + sdDg t+ +kLRkgv+F+DG+p+t++Dvv+s+ r +dp  as++ +l+e   + k++ av+d++v++ l +pn++ +++la  p  
  EHU00333.1 105 TVKPALAESI-D-SDDGVTWSIKLRKGVTFHDGKPFTSKDVVYSLSRHKDPAVASSAFKLAE---QFKTINAVNDNEVQLILVAPNFDVPYMLATSPFL 198
                 689******6.6.********************************************99996...********************************** PP

                 HGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEEEE CS
   SBP_bac_5 100 iakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglkvl 198
                 i+        +++++   k +gtGP++ k+f+pg ++  ++np+Y+++g+p+ld++e+  ++d++ar++al+sG+i++++++++sd  ++  +++  v 
  EHU00333.1 199 IV--------QDGTKDFSKGIGTGPFVCKSFTPGVSTLGTKNPNYFKPGLPHLDQVELLGVTDQAARVNALLSGDIQVASGLKASDSMRISRTPDHGV- 288
                 **........4566667777**************************89**************************************************. PP

                 EEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSS.STTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETCE CS
   SBP_bac_5 199 yespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansl.lppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrekk 296
                  e++gg +t l + t+++p +++++  A+ y  +re +vk+vl+g + + n + +pp++p ++ + kp +   dpekAk ++++aG  ++         
  EHU00333.1 289 LETKGGMYTNLIIRTDIKPGSNPDFVLAMKYLQPREIVVKTVLQGFGDVSNDTpVPPWHPLYNADLKPRPL--DPEKAKFYINKAGMSGQT-------- 377
                 ************************************************999999**************965..****************97........ PP

                 EEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHH...........H CS
   SBP_bac_5 297 lkltlllasgspaekaiaeliqqqlkkiGikvevktvdwa...........a 337
                   + + +++  + +++ a+liqq  +++G++v+v+ v+ +            
  EHU00333.1 378 --IEIVTTPPLEGATEGAQLIQQVGRNVGLNVNVRRVPYEgywgthwmkdpI 427
                 ..9**********************************985344333333333 PP

>> MG4  Macroglobulin domain MG4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.72   6.5e+03      22      39 ..     130     147 ..     120     181 .. 0.74
   2 ?   10.5   0.0   5.6e-05       0.5       5      31 ..     231     257 ..     230     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.72
         MG4  22 vkdpdgspaknvpVkiea 39 
                 v+ +dg+p+  + V+ ++
  EHU00333.1 130 VTFHDGKPFTSKDVVYSL 147
                 566788888888887777 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.6e-05
         MG4   5 ktpkffKpGlPfsikVlvkdpdgspak 31 
                 k p++fKpGlP   +V++    ++ a+
  EHU00333.1 231 KNPNYFKPGLPHLDQVELLGVTDQAAR 257
                 789**************9999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 4401.24
//
Query:       EHU00334.1  [L=425]
Description: FAD dependent oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-58  198.3   0.4      3e-58  198.1   0.4    1.0  1  DAO             FAD dependent oxidoreductase
    7.4e-10   38.6   0.1    0.00037   19.8   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.6e-09   37.5   2.2    2.3e-08   33.6   1.3    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.1e-08   34.2   0.3    7.9e-05   21.5   0.2    2.1  2  HI0933_like     HI0933-like protein
    3.2e-07   29.8   3.9      5e-07   29.2   2.4    1.8  2  FAD_binding_2   FAD binding domain
    1.4e-05   24.5   0.1    2.2e-05   23.9   0.1    1.3  1  FAD_binding_3   FAD binding domain
    2.2e-05   23.7   0.4    4.1e-05   22.8   0.4    1.4  1  GIDA            Glucose inhibited division protein A
    3.6e-05   23.3   0.1    5.1e-05   22.8   0.1    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
    0.00019   20.8   0.8    0.00031   20.1   0.4    1.5  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00021   20.6   0.2    0.00035   19.9   0.2    1.3  1  Thi4            Thi4 family
    0.00029   21.0   1.7    0.00029   21.0   1.7    2.5  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00064   19.1   0.1      0.044   13.1   0.0    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
    0.00088   19.2   1.4     0.0052   16.7   0.3    2.1  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0016   18.4   1.6       0.46   10.4   0.1    2.4  2  NAD_binding_9   FAD-NAD(P)-binding
     0.0017   17.5   0.6     0.0031   16.6   0.6    1.4  1  Lycopene_cycl   Lycopene cyclase protein
     0.0025   18.3   1.3      0.012   16.2   0.6    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0055   16.3   0.1     0.0077   15.8   0.1    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.048   13.2   0.5       0.08   12.5   0.5    1.3  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
       0.17   11.2   0.1       0.27   10.5   0.1    1.2  1  ThiF            ThiF family
       0.17   11.6   0.0       0.38   10.5   0.0    1.5  1  ScdA_N          Domain of Unknown function (DUF542)


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.1   0.4   3.3e-61     3e-58       1     352 []      27     383 ..      27     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 198.1 bits;  conditional E-value: 3.3e-61
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS..........STHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl..........rylpeaselarlslealeelreleeelgididyrrtGll 87 
                 dvv+iG+G +G+s+A+ Lar g  V++l++g ++ s+aS rn+g++  g+            l++as++++   +a+ +  +l +++ id+d+r +G+l
  EHU00334.1  27 DVVVIGAGFTGVSAALSLARSGinVVVLDSG-EVMSQASARNGGHCNTGVaqnfaslvasQGLEQASRFYKAFDDAVTYVGQLIKDEQIDCDFRLCGKL 124
                 9*******************9**********.5555*************98777777766556666699999999999998888888************ PP

                 EEESSHHHHHHHHHHHHHH.HHTTTTEEEEEHHHHH.HHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEE CS
         DAO  88 slaadeeelealdkllall.leagldaelldaeevr.elepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgver 184
                  la++++ + +l++ ++l  +  ++++ell+++e++ e++    +++g+l+ +++gq++  k+  +la+ a++ G++i++++ vt+le+ dg  ++v  
  EHU00334.1 125 KLASKASHFSGLREAWELMrRTVDPEVELLSQSEIAqEIDG--GDFHGGLLQHHGGQMHMGKFGVGLAEVAARSGAKIYTHHHVTKLERLDGYRHRV-- 219
                 ***98888*********9877788888*****765525554..59******************************************9966555666.. PP

                 ECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..EEETTTTEEEEEETTSEEEEEESSEEETTCSSTS CS
         DAO 185 ttp.gendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe..tdddgrgvyvtprkdgrvlvGgtadeesgdddpe 279
                 +t+ g + a d+v +a+G+ sd  +   + ++++i+pv + ++v++pl+ +l+    +lp+     +  + g y++ ++d r+++Gg a  +++  +p+
  EHU00334.1 220 VTSkGDILA-DKVLMATGCSSDgPF---PWFQRRIVPVGSFIVVTEPLDTALLTG--LLPHKRnyVTSMNIGNYFRTTADSRLVFGGRA--RFAISNPT 310
                 455576655.9**********9977...777899*************99866544..44443357777799****************98..77777778 PP

                 CSHHHHHHHHHHHHHHSGGGCG..EEEEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 280 vdeedidellealrklfPqlgd..vlrkwaGlrpl.pdglpligetpgvkglylatGhsghGltlapatGkllael 352
                  d++  d l  a++ +fP+l++  + ++w G+ ++  d+lp  ge    +g+++  G+sghG +++  +G+++a+l
  EHU00334.1 311 SDSRSGDILHAAMASMFPRLRHtqIDYCWGGMVDMsADRLPHAGE---QDGVFYSLGYSGHGTQMSVWMGRVMADL 383
                 88888888999999999**96644889*******758********...59************************97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.2e-07   0.00037     164     224 ..      25      85 ..      16     115 .. 0.83
   2 !   16.5   0.0   4.3e-06    0.0038      87     133 ..     189     236 ..     183     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.2e-07
  Pyr_redox_3 164 gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvke 224
                  + +vvViG++ ++v aAl l+r g +V v+++g+ +++ +++   + +  + +++++lv++
   EHU00334.1  25 HADVVVIGAGFTGVSAALSLARSGINVVVLDSGEVMSQASARNGGHCNTGVAQNFASLVAS 85 
                  6789999999999999999999999999999999999999988888888888888888876 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.3e-06
  Pyr_redox_3  87 lrevaksfelpiklfeeVesvkk.edegfevetsketyeAkkviiAtG 133
                  l+eva++   +i ++++V+++++ ++   +v tsk+++ A+kv++AtG
   EHU00334.1 189 LAEVAARSGAKIYTHHHVTKLERlDGYRHRVVTSKGDILADKVLMATG 236
                  578999*****************55567******************** PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   1.3   2.6e-11   2.3e-08       2     111 ..      27     239 ..      26     244 .. 0.83
   2 !   10.6   0.0   0.00026      0.24     189     243 ..     189     243 ..     172     269 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 2.6e-11
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE................TTHCHHHCSHHH.......HCHHHHHHHHHHHHH................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxx.......xxxxxxxxxxxxxxx................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve................legtclnggcll.......skallgvaedaeias................... 57 
                  dvvviG+G+ G++aal la++g++v++++                 +g                s+ l++++++++ +                    
   EHU00334.1  27 DVVVIGAGFTGVSAALSLARSGINVVVLDsgevmsqasarngghcNTGVA------QnfaslvaSQGLEQASRFYKAFDdavtyvgqlikdeqidcdf 118
                  8***************************6667777777653333322222......22222223666666666666666******************* PP

                  .............................................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.. CS
                  .............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2  58 .............................................................evvkklnqgielllgeevvkidpgkkkvklekkke.. 92 
                                                                                ++ k++ g+  ++++++ ki++ ++  kle + +  
   EHU00334.1 119 rlcgklklaskashfsglreawelmrrtvdpevellsqseiaqeidggdfhggllqhhggqMHMGKFGVGLAEVAARSGAKIYTHHHVTKLERL-Dgy 215
                  *************************************************************99999****99999999****777755555544.459 PP

                  .....TCEEEEEESEEEE---EEE CS
                  .....xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  93 .....gdeekiaydklvlAtGssp 111
                        ++ +i +dk+++AtG+s+
   EHU00334.1 216 rhrvvTSKGDILADKVLMATGCSS 239
                  9999977779***********876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00026
                  HHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstel 243
                  l+e+  ++G ++++++ v+++++ +  +++vv+++g+ i ad v++a+G + + ++
   EHU00334.1 189 LAEVAARSGAKIYTHHHVTKLERLDGyRHRVVTSKGD-ILADKVLMATGCSSDGPF 243
                  5666777888899999999999888866667777777.789999999988776555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.2   8.8e-08   7.9e-05       2      62 ..      27      85 ..      26     133 .. 0.77
   2 !   10.8   0.0   0.00016      0.14     118     166 ..     192     239 ..     188     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 8.8e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnlseepeellsr 62
                 dv+viG+G  G+ aA+s+a+ g +V++l++++ + +      gG cN     ++++ l+++
   EHU00334.1 27 DVVVIGAGFTGVSAALSLARSGINVVVLDSGE-VMSQASARNGGHCNTGV-AQNFASLVAS 85
                 8*****************************95.56666777789***776.5566555554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00016
                  HHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS CS
  HI0933_like 118 elkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlS 166
                   + ++g k++++++v+++e+ ++ ++rv t s++ + adk+++AtG  S
   EHU00334.1 192 VAARSGAKIYTHHHVTKLERLDGYRHRVVT-SKGDILADKVLMATGCSS 239
                  567899************************.9**************987 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   2.4   5.6e-10     5e-07       1      44 [.      27      70 ..      27      97 .. 0.91
   2 ?   -0.4   0.0      0.51   4.6e+02     147     204 ..     189     240 ..     132     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.6e-10
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S- CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGg 44
                   Dv+ViG+G+ G +AAl++a+ G +v+v++ +++++ a+a  +G 
     EHU00334.1 27 DVVVIGAGFTGVSAALSLARSGINVVVLDSGEVMSQASARNGGH 70
                   9********************************98888877775 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.51
                    HHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 147 lvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    l+e a + g ++++++ +++L + dg  +  vv+  ++g    i a++v++atg  + 
     EHU00334.1 189 LAEVAARSGAKIYTHHHVTKLERLDGYRHR-VVT--SKGD---ILADKVLMATGCSSD 240
                    333344455999999999999876663333.333..2333...456777777776555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   2.5e-08   2.2e-05       2      40 ..      26      64 ..      25     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.5e-08
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                   +dV+++GaG +G+++al L++ G++vv+++  +  ++ +
     EHU00334.1 26 ADVVVIGAGFTGVSAALSLARSGINVVVLDSGEVMSQAS 64
                   69****************************988888777 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.4   4.6e-08   4.1e-05       1      29 [.      27      61 ..      27     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.6e-08
                CEEEE-SSHHHHHHHHHHHHTT--EEEE......E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi......t 29
                dv+ViG+G  G+ AAl +ar+G++v+ +       
  EHU00334.1 27 DVVVIGAGFTGVSAALSLARSGINVVVLdsgevmS 61
                79***********************9986665551 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   5.7e-08   5.1e-05       1      33 [.      27      59 ..      27     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.7e-08
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergv 33
                  DvvV+G+g  Gv AA++ ar+G +v++++  +v
    EHU00334.1 27 DVVVIGAGFTGVSAALSLARSGINVVVLDSGEV 59
                  9**************************997654 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.4   3.5e-07   0.00031      19      77 ..      18      73 ..       5     110 .. 0.79
   2 ?   -3.4   0.0       5.4   4.9e+03      46     140 ..     192     206 ..     185     226 .. 0.51

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.5e-07
                 TTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C 19 laGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev 77
                 + G +p  ++a v+viG+G  G++A+   ++ g +V+vlD  +   +     g++ +++
   EHU00334.1 18 ASGPLP--AHADVVVIGAGFTGVSAALSLARSGINVVVLDSGEVMSQASARNGGH-CNT 73
                 556667..89******************************987666555555555.555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.4
                  HHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEETTGGGT-SBTT-.-T CS
  AlaDh_PNT_C  46 takglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDvAidqGGnvets.rl 140
                  +a++ gak++                                                                                 t  ++
   EHU00334.1 192 VAARSGAKIY---------------------------------------------------------------------------------THhHV 206
                  3333333333.................................................................................33222 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   3.9e-07   0.00035      16      49 ..      24      56 ..      22      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.9e-07
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailer 49
                a +Dvv++GaG +G++aa  la++ +++v++l++
  EHU00334.1 24 AHADVVVIGAGFTGVSAALSLARS-GINVVVLDS 56
                579*********************.******986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.7   3.3e-07   0.00029       1      32 [.      30      61 ..      30      99 .. 0.78
   2 ?   -2.1   0.1       5.2   4.6e+03      25      40 ..     190     205 ..     174     219 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.3e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   ++GaG++G +aA  La+ g++v++l++++  +
     EHU00334.1 30 VIGAGFTGVSAALSLARSGINVVVLDSGEVMS 61
                   8*************************998764 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.2
                    E-SSSSSSGGG-EECE CS
  NAD_binding_8  25 lekrdrlGGraasyev 40 
                     e + r G ++++ ++
     EHU00334.1 190 AEVAARSGAKIYTHHH 205
                    3334444444444443 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.028        25       1      23 [.      35      57 ..      35      79 .. 0.88
   2 !   13.1   0.0   4.9e-05     0.044     180     266 ..     149     241 ..     121     258 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.028
                   HHHHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEar 23
                   ++G +aA  L++ G +V+vl + 
     EHU00334.1 35 FTGVSAALSLARSGINVVVLDSG 57
                   58******************865 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.9e-05
                    T.TTCBHHHHTCCCCHHHHHTSCCCEETTH...THHHHHHHHH..TTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEEE-S-HHHHH CS
  Amino_oxidase 180 p.selsaklalpllwelegfggslllprgG...lsqlpealae..elrgldirlntrVkeikr.egdgvtvtledgevveaDaVvvTvplgvlk 266
                    p  el++ + + ++ +  +f+g+ll   gG   ++     lae   ++g +i + + V++++r +g   +v ++ g+   aD+V++++  +   
     EHU00334.1 149 PeVELLSQSEIAQEIDGGDFHGGLLQHHGGqmhMGKFGVGLAEvaARSGAKIYTHHHVTKLERlDGYRHRVVTSKGDI-LADKVLMATGCSSDG 241
                    4467888999999999999999999998889999999999999999*****************999999999988885.********9877655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   5.8e-06    0.0052       2      31 ..      28      61 ..      27     103 .. 0.76
   2 ?    1.2   0.0      0.33   2.9e+02       8      27 ..     183     202 ..     180     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.8e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S....- CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi....s 31
                v viGaG  G + a  +a++g++Vv++d     s
  EHU00334.1 28 VVVIGAGFTGVSAALSLARSGINVVVLDSgevmS 61
                89**************************844432 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.33
                 SCCHHHHHHHHHHTT-EEEE CS
     3HCDH_N   8 GtmGagiaavfasagleVvl 27 
                 G  G g+a+v+a++g ++  
  EHU00334.1 183 GKFGVGLAEVAARSGAKIYT 202
                 889************99875 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00052      0.46       1      37 [.      29      60 ..      29      81 .. 0.81
   2 !    6.9   0.1    0.0064       5.7     117     154 ..     200     236 ..     187     238 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00052
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   +++GaG++G++++  L+++      +++ + d  e +
     EHU00334.1 29 VVIGAGFTGVSAALSLARS-----GINVVVLDSGEVM 60
                   69***************99.....4888888876665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0064
  NAD_binding_9 117 vevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    +   +++v++le+ ++ ++ + +++  + ad+V +A+G
     EHU00334.1 200 IY-THHHVTKLERLDGYRHRVVTSKGDILADKVLMATG 236
                    33.3567888888877777788999999*********9 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   3.5e-06    0.0031       1      36 [.      27      60 ..      27      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   DvvviGaG  g+s A  l  a+ g++vv++++++ +
     EHU00334.1 27 DVVVIGAGFTGVSAALSL--ARSGINVVVLDSGEVM 60
                   9*****************..***********99866 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   1.3e-05     0.012       2      32 ..      28      58 ..      27      66 .. 0.89
   2 ?   -0.6   0.0       2.2     2e+03      51      68 ..     194     211 ..     183     224 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                vvv+G+G++g+ +A  la+ g +V v++ ++
  EHU00334.1 28 VVVIGAGFTGVSAALSLARSGINVVVLDSGE 58
                8***********************9988765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.2
                 HHTTEEEECSEEEEEEEE CS
   Pyr_redox  51 ekngievllntkveeieg 68 
                  + g ++++++ v+++e 
  EHU00334.1 194 ARSGAKIYTHHHVTKLER 211
                 345667777777777664 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   8.6e-06    0.0077       3      33 ..      28      58 ..      26     104 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.6e-06
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDide 33
                    ++viG+G+ G+  a+ la+ g++v+++D  e
      EHU00334.1 28 VVVIGAGFTGVSAALSLARSGINVVVLDSGE 58
                    89**************************865 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   8.9e-05      0.08       6      50 ..      27      71 ..      24      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.9e-05
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-E CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfe 50
                 ++viG G  G + al l  sg++vvv    +  s ++A++ g+ 
  EHU00334.1 27 DVVVIGAGFTGVSAALSLARSGINVVVLDSGEVMSQASARNGGHC 71
                699***********************9888888888888888765 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0003      0.27      18      48 ..      25      54 ..      12      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
                TSEEEEE--SHHHHHHHHHHHHHTTTEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 18 dskvllvGaGglGsellknLalsGvgkltlv 48
                ++ v+++GaG  G  ++  La+sG+  + + 
  EHU00334.1 25 HADVVVIGAGFTGVSAALSLARSGIN-VVVL 54
                5789********************95.4444 PP

>> ScdA_N  Domain of Unknown function (DUF542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042      0.38      20      34 ..     331     345 ..     321     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
      ScdA_N  20 rkygIDFCCgGkvsL 34 
                 r+ +ID+C+gG v +
  EHU00334.1 331 RHTQIDYCWGGMVDM 345
                 7889*******8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3138.14
//
Query:       EHU00335.1  [L=222]
Description: type II haloacid dehalogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-07   31.3   0.0    2.7e-07   30.8   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
      0.002   18.4   0.0      0.021   15.1   0.0    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.089   12.9   0.0       0.17   12.0   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   4.6e-11   2.7e-07      77     174 ..      94     189 ..      41     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 4.6e-11
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagik 174
                 +  p ++v   L ++ ++ + l + T+++++ + +++ +lg    ++  +t+e+++  KP+ + +e +lekl++ ++e++ v  s+ +D+++a+ +gik
  EHU00335.1  94 TWGPHPDVPAGLAKV-AEAFPLVLLTNSMKDLIPHHIPRLG--APIHMTITAEEAGAYKPQMKGFEYMLEKLDCRPDEILHVSSSFrYDLMTAHDLGIK 189
                 556788999999999.889**********************..689999************************************************98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.5e-06     0.021     100     205 ..      78     182 ..       6     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.5e-06
                 HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGD 198
                 v + qa+ + ++t   ++ + p++   +a+  +a +++vllt++ +    + + +lG   ++ +i++++ +  kp  +g+++ +++L  +p e+++V  
  EHU00335.1  78 VTWTQADSDYIYTDCATWGPHPDVPAGLAKVAEA-FPLVLLTNSMKDLIPHHIPRLG-APIHMTITAEEAGAYKPQMKGFEYMLEKLDCRPDEILHVSS 174
                 3344889999999999999***********9977.89*************999999*.4448899999999**************************98 PP

                 SHH.HHHH CS
                 xxx.xxxx RF
   Hydrolase 199 gvn.Daaa 205
                 ++  D+  
  EHU00335.1 175 SFRyDLMT 182
                 88777665 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.8e-05      0.17       4      53 ..     149     199 ..     147     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvt 53 
                     KP+   +++ le+l+  p+e+l +  + + D+  A++ G+k  v V +G +
      EHU00335.1 149 KPQMKGFEYMLEKLDCRPDEILHVSSSFRYDLMTAHDLGIKHkVWVNRGHE 199
                     999999*********************************987799999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1756.75
//
Query:       EHU00336.1  [L=489]
Description: aldehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-141  471.2   0.0   3.2e-141  471.0   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.049   13.0   0.1       0.27   10.7   0.0    2.2  2  DUF2917   Protein of unknown function (DUF2917)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.0   0.0  3.6e-145  3.2e-141       3     462 .]      23     485 ..      21     485 .. 0.97

  Alignments for each domain:
  == domain 1  score: 471.0 bits;  conditional E-value: 3.6e-145
                 T-SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHH CS
      Aldedh   3 esesetievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlr 98 
                 +++++ ++v  P++g+v+a+  +a+aedvd+av +A++a k  +w+   ++eR+++Lr++adl+e+    la+le+l    p+++  + e++ +++ +r
  EHU00336.1  23 QTQGDAFAVKRPSDGKVFATLGEAQAEDVDHAVMTAHQALKtsGWSGCAPRERGRVLRRWADLIEQ-DPLLAQLEALGSTRPITDVVQhEIPFTAEAIR 120
                 5566779*********************************9878*********************9.789***************9999********** PP

                 HHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHH CS
      Aldedh  99 yyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevg 197
                 +yae a+k++g+ +p+++++l +   eP+Gv+gaItPWNfPl++a+wk  palaaGN+vvlKP+e tpls++++ael+ +aglP+g+ln+v+gsg+ +g
  EHU00336.1 121 FYAECADKYSGDLFPTRDSSLGMLIAEPYGVIGAITPWNFPLSMASWKCGPALAAGNAVVLKPSELTPLSTVRMAELAVQAGLPAGILNIVQGSGAVTG 219
                 ****************88********************************************************************************* PP

                 HHHHH-TTESEEEEES-HHHHHHHHHHHHCT.TSEEEEEE---EEEEE-TTS.HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 198 ealvehpevdkvsftGstevgrkiakaaakn.lkrvtlElGGknplivleda.DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 +alv+hp v+kvsftGst +g +i++ aa+  +k+vtlElGGk+p +v++da +++  +++i++g++ n GQ C+a++rl+vq++i+ +++e+l++  +
  EHU00336.1 220 SALVRHPLVRKVSFTGSTVTGARIMSDAAQFgMKPVTLELGGKSPQLVFDDAgEIEVLAQRILRGFTANGGQACVAGTRLIVQRGIAGALTERLAALCR 318
                 ***************************775449*******************88********************************************* PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 +++ g   +e++ + Pli+++q +kv++++e ak++ga++l+Gg+ + a+ ++g+f++Pt+l++v++d++ +q+EiFGPVl++ +f++e+e + +a   
  EHU00336.1 319 EVRPGVTWQETSRYAPLIDARQGNKVQSVIEAAKAQGADVLVGGD-RFADTDEGWFWQPTLLTQVKQDNPAVQQEIFGPVLTIQTFDSEDEGLGLAAHE 416
                 ********************************************5.5899************************************************* PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                  yGL agv+t +l ra+r+++ +  G+v++N++ ++    +p gG+  Sg+G++ g+++++++ + k+v
  EHU00336.1 417 TYGLCAGVHTLSLPRAMRAIRGIASGTVWVNRYGRSGDFIIPTGGFMGSGIGKDLGRQAFQACQRQKSV 485
                 *********************************77666668**********************999987 PP

>> DUF2917  Protein of unknown function (DUF2917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.19   1.7e+03       4      15 ..     174     185 ..     172     202 .. 0.50
   2 ?   10.7   0.0     3e-05      0.27      10      38 ..     426     456 ..     421     461 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.19
     DUF2917   4 apgqavslrara 15 
                 a+g av l++ +
  EHU00336.1 174 AAGNAVVLKPSE 185
                 444444444433 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3e-05
     DUF2917  10 slr.aragqeLr.vreGrvWvTregdpeDhw 38 
                 +l  +ra +++r +++G vWv r g+++D  
  EHU00336.1 426 TLSlPRAMRAIRgIASGTVWVNRYGRSGDFI 456
                 556578999999*****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 4000.34
//
Query:       EHU00337.1  [L=485]
Description: succinate-semialdehyde dehydrogenase I, NADP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-168  560.4   0.1   2.7e-168  560.2   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.2   0.1  1.5e-172  2.7e-168       5     461 ..      26     479 ..      22     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: 560.2 bits;  conditional E-value: 1.5e-172
                 SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
      Aldedh   5 es.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyae 102
                  +  t++v +Patge++a+vpa ++++ +aa+a A++  +awa++p ++Ra++L+k+++l+ +++++la ++t+e+Gkplaear+ev + +++++++ae
  EHU00337.1  26 YQgATLAVNDPATGETLASVPALGRQETEAAIACAESVRHAWAATPNATRAALLEKWHQLILDNADDLAIIMTAEQGKPLAEARGEVLYGASFVKWFAE 124
                 5546799******************************************************************************************** PP

                 HHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh 103 laeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200
                 +a++++g+++p  +++++++v ++P+Gv +aItPWNfP++++++k+apalaaG+ +++KP++ tplsal+la l+e+ag+P+gvl+v+tg   ++g+al
  EHU00337.1 125 EARRIYGDTIPApTTDRRIIVLKQPVGVAAAITPWNFPIAMITRKVAPALAAGCPIIVKPSDLTPLSALALAVLAERAGFPAGVLQVLTGMPTDIGAAL 223
                 ************88************************************************************************************* PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvg 299
                 +e++ v+k+sftGst+vg+ ++k++a+++kr++lElGG++pliv++daD++ av++++++ f+naGQ+C++a+r+lvq++iy++f+++l++a+++lkvg
  EHU00337.1 224 TESRLVRKISFTGSTRVGQLLMKQCADSIKRLSLELGGNAPLIVFDDADIEIAVAGVMTSKFRNAGQTCVCANRILVQRNIYERFTARLLDAVATLKVG 322
                 *************************************************************************************************** PP

                 -TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESE CS
      Aldedh 300 dpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLa 398
                 d++++ +++GPli+ +++ekv++++++a ++ga+ll+Gg     +++ g +v+Ptvl +vt++mria eE+FGPV++++ f+dee+a+++aNdt++GL+
  EHU00337.1 323 DGFAPGSTIGPLINTSAVEKVNGHIDDALQKGATLLTGG----ISNDPGTWVQPTVLGQVTSEMRIALEETFGPVAPLFIFDDEEQALAMANDTPFGLG 417
                 ***************************************....6789**************************************************** PP

                 EEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 399 agvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 a+ ft++++ra rvae+le+G+v++N+   + + a pfgGvk Sg+Greg+++g++ey+e kt
  EHU00337.1 418 AYFFTENIRRAWRVAEALEFGMVGFNTGVISLEVA-PFGGVKLSGIGREGSRYGIDEYLEQKT 479
                 ****************************7777777.************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3967.16
//
Query:       EHU00338.1  [L=319]
Description: DNA-binding transcriptional activator of cysteine biosynthesis [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-47  161.8   0.2    2.1e-47  161.2   0.2    1.3  1  LysR_substrate  LysR substrate binding domain
    2.1e-13   50.0   0.1    4.8e-13   48.9   0.1    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.042   13.7   0.0    1.7  1  MarR_2          MarR family
      0.021   14.9   0.2      0.062   13.4   0.0    1.9  2  HTH_20          Helix-turn-helix domain
      0.022   14.3   0.2       0.15   11.6   0.0    2.3  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.095   12.6   0.0       0.32   10.9   0.0    1.9  2  HTH_5           Bacterial regulatory protein, arsR family
       0.12   12.3   0.3       0.47   10.4   0.1    2.0  2  HTH_11          HTH domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.2     8e-51   2.1e-47       3     207 ..      90     294 ..      88     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 8e-51
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepv 96 
                     + +g L+i++++t ary lpp++++fr++yP+v+lel +g+++e++++l++ge+D++i+++ + + ++l a p+++ ++ l++++dh+La+++pv
      EHU00338.1  90 ESSGILSIATTHTQARYSLPPVIKSFRQLYPNVRLELNQGSPQEIVNMLLAGEVDVGIASEMLaNNNSLAAFPWFSWHHALLVPRDHELAQQQPV 184
                     789******************************************************************************************** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkg 190
                     sl++L ++pli++++g + r +++ a+++aglkp+++l++ + + ++  v+ GlG+++l + a+++    g+lv +  + + +   +++l  ++g
      EHU00338.1 185 SLNALSQHPLITYRQGITGRSRVDSAFQRAGLKPDIVLSAQDSDVVRTYVKLGLGVGILADQACEK-EPGGELV-RLDATHLFDaNTVWLGLKRG 277
                     ****************************************************************77.5566888.777777************** PP

                     CCCHHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflrea 207
                     + ++  v +f++++ ++
      EHU00338.1 278 QLQRNYVWQFLELCNAN 294
                     ************99776 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   1.9e-16   4.8e-13       1      59 [.       3      63 ..       3      64 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.9e-16
                HHHHHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.EEE-HHH CS
       HTH_1  1 lrqlrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.lrLTeaG 59
                ++ql++  + a+ + ++t+ A  L +sq+ vsr+i++LE+elgv++f+R g++ l +Te G
  EHU00338.1  3 FQQLKIIREAARREfNLTEVASTLFTSQSGVSRHIRDLEDELGVEIFVRRGKRlLGMTEPG 63
                5899********999**********************************888889999998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.042       8      47 ..       6      42 ..       1      43 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                + ++ + +rr+   ++ +e+a +l  s+s vsr++++L++
  EHU00338.1  6 LKIIREAARRE---FNLTEVASTLFTSQSGVSRHIRDLED 42
                55555555555...9***********************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.062      15      52 ..       8      45 ..       3      55 .. 0.79
   2 ?   -3.1   0.0       3.5   8.9e+03      30      44 ..     178     192 ..     177     192 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH.CT CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLee.ag 52
                i r+   ++++ ++e+a +l +s++ +s+H+r Le+  g
  EHU00338.1  8 IIREA-ARREFNLTEVASTLFTSQSGVSRHIRDLEDeLG 45
                44444.8899999*********************98555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.5
                 HHHHHTS-HHHHHHH CS
      HTH_20  30 laerldlskntlsyH 44 
                 la++  +s n ls+H
  EHU00338.1 178 LAQQQPVSLNALSQH 192
                 555555677777777 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05      0.15      21      44 ..      20      43 ..       6      43 .. 0.90
   2 ?   -0.4   0.0      0.34   8.7e+02       9      22 ..     186     199 ..     186     199 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeee 44
                +e+A  l  S+s v+r+++ Le+e
  EHU00338.1 20 TEVASTLFTSQSGVSRHIRDLEDE 43
                79999*****************96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
      HTH_24   9 LelLqknprisqre 22 
                 L++L ++p i++r+
  EHU00338.1 186 LNALSQHPLITYRQ 199
                 89*********996 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.32       4      41 ..       5      42 ..       4      43 .. 0.87
   2 ?   -3.2   0.0       3.2   8.1e+03       6      18 ..     133     145 ..     133     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                HHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHH CS
       HTH_5  4 RlkILklLaegelcvcelaeelglsqstvShHLkkLre 41
                +lkI++  a++e   +e a  l  sqs vS+H + L++
  EHU00338.1  5 QLKIIREAARREFNLTEVASTLFTSQSGVSRHIRDLED 42
                57788888889999999999999*************98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.2
                 HHHHHHTTSSEEH CS
       HTH_5   6 kILklLaegelcv 18 
                 +I+++L  ge  v
  EHU00338.1 133 EIVNMLLAGEVDV 145
                 7999999888665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00018      0.47       6      52 ..       6      54 ..       3      59 .. 0.78
   2 ?   -1.6   0.0       1.1   2.8e+03       9      23 ..     178     191 ..     176     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
      HTH_11  6 lelLleargp.isgeeLAeeLnvSrrtvrrdIkaLeelg.vpIesepgr 52
                l++++ea    ++  e A  L  S + v r+I++Le+ + v+I  ++g+
  EHU00338.1  6 LKIIREAARReFNLTEVASTLFTSQSGVSRHIRDLEDELgVEIFVRRGK 54
                45555555555999999999999************65555***999997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
      HTH_11   9 LleargpisgeeLAe 23 
                 L ++++p+s + L++
  EHU00338.1 178 L-AQQQPVSLNALSQ 191
                 4.5677799999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2420.03
//
Query:       EHU00339.1  [L=305]
Description: DNA-binding transcriptional dual regulator of nitrogen assimilation [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-34  117.9   0.9    4.5e-34  117.6   0.9    1.1  1  LysR_substrate  LysR substrate binding domain
    2.2e-22   78.8   0.3    7.3e-22   77.1   0.3    2.0  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.043   13.5   0.0      0.058   13.1   0.0    1.3  1  NMT1_2          NMT1-like family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.9   7.6e-38   4.5e-34       3     205 ..      88     288 ..      86     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 7.6e-38
                     TSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   3 glrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                       +g+++ig  p +a + l +pll+  r++yP++ + l+e++s++l d + +g+lD+a+++++ + +g+ ++pL++e l+lv + ++p   g+ v
      EHU00339.1  88 VVEGQVSIGLAPGTAaSALTMPLLQTVREQYPDIMIYLHENSSSALNDNIISGQLDMAVLYDRAPTAGINSVPLLKEDLYLVGATACP---GANV 179
                     56899999976555549999*******************************************************************9...9999 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     +l+++a+  l l ++ s+ r+++++a+  ++l++r+  e++sl++l a++++G+G+++lp+sa+r+ + + +  ++ +  p+++ +l+l   ++ 
      EHU00339.1 180 DLAEVAQMSLFLPRDYSAVRQRVDEAFSLRRLSARIIGEIESLSTLTAAISSGMGVTVLPESAARALVGSTQAWMARITSPTISLPLSLNLSHRL 274
                     ********************************************************************8888888999999************** PP

                     CCHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflr 205
                     +lsp ++a+ ++l+
      EHU00339.1 275 PLSPPAQAVKNILL 288
                     ********998886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.3   1.2e-25   7.3e-22       1      60 []       3      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 1.2e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+l++fv++++ gs+t+AAe L+++qpa+s+q+++LE el+++L++Rt+rg+++TeaG+
  EHU00339.1  3 LRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELEQQLLNRTKRGVTPTEAGK 62
                79********************************************************95 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.6e-06     0.058       6     102 ..      91     186 ..      86     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.6e-06
      NMT1_2   6 eqlklGfialtdaaplvvakekglfake.GltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnklkd 102
                  q+++G  + t a  l +   + + +++ ++      ++s ++l+d++++g+lD+a+  + ap++  + +   k+d++ + + +  G+ + l++ +++
  EHU00339.1  91 GQVSIGLAPGTAASALTMPLLQTVREQYpDI-MIYLHENSSSALNDNIISGQLDMAVLYDRAPTAGINSVPLLKEDLYLVGATACPGANVDLAE-VAQ 186
                 6889999999999999999999999999333.366778999*****************988888766666577888888888888888888875.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2660.20
//
Query:       EHU00340.1  [L=344]
Description: permease component of an ABC superfamily ribose/xylose/arabinose/galactoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-45  154.8  41.9    4.2e-45  154.0  41.9    1.4  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.56   10.2   7.6       0.11   12.4   2.0    2.6  2  DUF1427       Protein of unknown function (DUF1427)
        2.3    8.5   4.4         18    5.6   0.1    2.4  2  C_GCAxxG_C_C  Putative redox-active protein (C_GCAxxG_C_C)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0  41.9   7.1e-49   4.2e-45       3     268 .]      63     333 ..      61     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 7.1e-49
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl...........lllallvallvgaavglllgllvlrlkvdeliit 88 
                   + ++ ++ai++i+A+G++ v+ i+ +i+l+ g+++al a+vaa l++  + l             + + ++++vg+++gl++g+l++r++++++i+t
    EHU00340.1  63 ILIVLQVAIIGIIAVGVTQVI-ITTGIDLSSGSVIALTAVVAASLAQTSDTLtpmfpslvnmpAVVPIGAGIGVGLLCGLINGVLITRTGIPPFIAT 158
                   56899****************.***********************9999999999******65555566789999********************** PP

  BPD_transp_2  89 llllsvlvgltlllltgitsgvkgqssvkellgfagallsflsaviv.llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfv 184
                   l++++ ++gl++ ++t+          ++++++ ++ + s ++++   +++l+++l++++ l++tr+G  ++a+g+n + a+++Ginv+++ ++++ 
    EHU00340.1 159 LGMMVSARGLAQ-YYTQ----------GNPISFLSDGFTSIGQGAMPvIIFLVVALVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLIIVYT 244
                   ************.3333..........3344444444444444444448999********************************************* PP

  BPD_transp_2 185 isgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   i+gal+glaG++la++  s++ ++gvg++++aiaa+v+Gg       g++ gt+iGa+i+g++ks + t++g++   ++++ g+++++++
    EHU00340.1 245 IAGALSGLAGVVLAARVSSGQSSMGVGYELDAIAAAVIGGSslmggvGRITGTLIGAVILGLIKS-GFTFVGVDAYIQDIIKGIIIVAAV 333
                   *****************************************************************.999999**************9986 PP

>> DUF1427  Protein of unknown function (DUF1427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.35   2.1e+03      30      60 ..      69      99 ..      67     112 .. 0.75
   2 ?   12.4   2.0   1.9e-05      0.11       7      36 ..     133     162 ..     129     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.35
     DUF1427 30 vaLvGLlGiLvGeqvvPvakrllageevata 60
                va++G++ + v   ++  +  l +g+ +a++
  EHU00340.1 69 VAIIGIIAVGVTQVIITTGIDLSSGSVIALT 99
                7889998888888888888888777776654 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.9e-05
     DUF1427   7 lgaGllvGviYsllnvrsPaPPvvaLvGLl 36 
                 +g+Gll G+i ++l  r   PP +a +G++
  EHU00340.1 133 IGVGLLCGLINGVLITRTGIPPFIATLGMM 162
                 799**********************99986 PP

>> C_GCAxxG_C_C  Putative redox-active protein (C_GCAxxG_C_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0031        18      25      47 ..     125     146 ..     100     150 .. 0.82
   2 ?    3.7   1.1     0.012        70      14      49 ..     267     304 ..     254     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0031
  C_GCAxxG_C_C  25 lasgfggGmgrsgelCGalsGav 47 
                   +++ +g+G+g +g lCG ++G +
    EHU00340.1 125 AVVPIGAGIG-VGLLCGLINGVL 146
                   5677899999.**********87 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.012
  C_GCAxxG_C_C  14 elgldee..tllklasgfggGmgrsgelCGalsGavma 49 
                    +g+ +e   + +++ g ++ mg++g + G l Gav++
    EHU00340.1 267 SMGVGYEldAIAAAVIGGSSLMGGVGRITGTLIGAVIL 304
                   56666663245555556666699999********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2846.17
//
Query:       EHU00341.1  [L=494]
Description: ATP-binding component of an ABC superfamily sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-59  198.7   0.0    5.3e-34  117.7   0.0    2.2  2  ABC_tran     ABC transporter
    4.5e-10   39.8   0.0    0.00042   20.2   0.0    3.2  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00061   19.3   3.2      0.079   12.4   0.5    3.7  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00075   19.2   0.0     0.0033   17.1   0.0    2.0  2  AAA_29       P-loop containing region of AAA domain
      0.002   18.1   0.0      0.033   14.1   0.0    2.5  2  RsgA_GTPase  RsgA GTPase
     0.0031   17.3   0.0      0.013   15.3   0.0    2.0  2  MukB         MukB N-terminal
     0.0083   16.4   1.4       0.36   11.1   0.1    3.3  3  AAA_22       AAA domain
     0.0099   16.3   0.0       0.29   11.5   0.0    2.7  3  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.029   14.9   0.0    1.5  1  AAA_23       AAA domain
      0.019   14.7   2.0       0.52   10.0   0.5    3.2  3  AAA_30       AAA domain
      0.036   13.0   0.5       0.45    9.4   0.0    2.3  3  AFG1_ATPase  AFG1-like ATPase
       0.05   12.4   0.6         17    4.0   0.0    3.6  4  ABC_ATPase   Predicted ATPase of the ABC class
      0.058   13.5   0.0       0.71   10.0   0.0    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
       0.19   11.4   0.0       0.28   10.8   0.0    1.4  1  AAA_15       AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0   4.1e-37   5.3e-34       1     137 []      21     170 ..      21     170 .. 0.98
   2 !   79.1   0.0   3.3e-25   4.2e-22       2     136 ..     270     424 ..     269     425 .. 0.90

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 4.1e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+nvsl +++g+++a++GenGaGKStL+k+l+g+++p++G+i+++g++++  +++  lr+ i++++qe +l p++tv+en                  +
  EHU00341.1  21 LDNVSLRVRPGTVHALMGENGAGKSTLMKCLIGMYRPDQGSIKIKGEPVQFrDTMDALRSGISMIHQELNLVPHMTVAENiwlgrepvkfgfvdhaRLN 119
                 79************************************************98999**************************************999999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ee +++ls+l++  ++d+ v     +LS   +q+v++a+a+  +++++++DEpt+
  EHU00341.1 120 EETQQLLSRLNIRLKADRLV----GELSIASQQMVEIAKAVSWNSDIVIMDEPTS 170
                 99************999999....*****************************96 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 3.3e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................e 80 
                 ++vs+ +++ge++++ G  GaG S +++ l g++  ++Geil+dg ++    +    +k +++l+++   + lf  l+v en                 
  EHU00341.1 270 SDVSFGVRRGEILGVAGLVGAGRSEVMESLFGMVPFDSGEILIDGVPVAIdSPSVAIEKGMAFLTEDrkkSGLFLVLSVLENmsivnmpeysgkggfvS 368
                 68*********************************************9997899999**********99999**************9998888888853 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   + +++ +++++  ++k+ ++++  ++LSgG +q+v +ar ll +pk+l+lDEpt
  EHU00341.1 369 HVKMAQDCMDQIRRLNIKTPTMDQIINNLSGGNQQKVLIARWLLAQPKILILDEPT 424
                 33337788888888887778887778*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.4e-05     0.031       2      24 ..      34      56 ..      33      84 .. 0.75
   2 ?    1.8   0.0      0.13   1.7e+02     259     297 ..     161     199 ..     100     204 .. 0.90
   3 !   20.2   0.0   3.3e-07   0.00042     234     296 ..     394     453 ..     365     460 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l G Ng+GKS+L+++l ++ r
  EHU00341.1 34 HALMGENGAGKSTLMKCLIGMYR 56
                5799**************77764 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
      AAA_21 259 sllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++++ DEp + L    +++l++++++l++ g  ++  +H
  EHU00341.1 161 DIVIMDEPTSALTETEVAHLFTIIRDLREQGKAIVYISH 199
                 899************************999999999999 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 3.3e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 +++lS G ++   ++ +ll+++   ++l++DEp  g++  + +++++l++el+++g+ +i+++
  EHU00341.1 394 INNLSGGNQQKVLIARWLLAQP---KILILDEPTRGIDVGAKAEIYRLISELANRGVAIIMVS 453
                 5678999999977777888777...9*********************************9876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.5   6.2e-05     0.079      25     200 ..      32     202 ..      16     218 .. 0.63
   2 ?    1.1   0.1      0.18   2.3e+02      34      46 ..     289     300 ..     277     470 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.2e-05
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seykingkevtkke 122
                  + a++G+NG+GKs l+  +   +G     +   +   + ++  ++   + +  ++++ ++ +       +++++  ++  + e  ++ + ++   ++e
  EHU00341.1  32 TVHALMGENGAGKSTLMKCL---IGMYRPDQGSIKIKGEPVQF-RDTMDALRSGISMIHQELNLV-----PHMTVAENIWLGREpVKFGFVDHARLNEE 121
                 367999**********9999...56432222222222223333.455666666677765555544.....55555555555555455655566666677 PP

                 HHHHHHCTT-STT..CS-HHHHHHHHHHHH.HHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE.E-SSHH CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
       SMC_N 123 vsellesagiske..lLSgGektLvalaLl.fAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv.islree 200
                  ++ll++ +i  +   L  Ge ++++  ++ +A      + ++++De  +aL e++v+ + ++++  +++   iv is++ +
  EHU00341.1 122 TQQLLSRLNIRLKadRL-VGELSIASQQMVeIAKAVSWNSDIVIMDEPTSALTETEVAHLFTIIRDLREQGKAIVyISHKMD 202
                 77777777765541134.4677777777763455555577899999999999999999999999999999887775677654 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
                 TSSHHHHHHHHHH CS
                 xxxxxxxxxxxxx RF
       SMC_N  34 GSGKsnlldAilF 46 
                 G+G+s +++++ F
  EHU00341.1 289 GAGRSEVMESL-F 300
                 55555555555.3 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-06    0.0033      13      39 ..      22      48 ..      19      61 .. 0.83
   2 ?   -1.6   0.0       1.8   2.4e+03      12      39 ..     269     296 ..     267     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ ++++++  ++ l+G++G+GKSTl+
  EHU00341.1 22 DNVSLRVRPGTVHALMGENGAGKSTLM 48
                667788888779**************8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTll 39 
                 f++ ++ +++ ++  ++G  G+G S ++
  EHU00341.1 269 FSDVSFGVRRGEILGVAGLVGAGRSEVM 296
                 5566666765557889999****99776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-05     0.033      97     124 ..      28      56 ..      10      70 .. 0.78
   2 ?    0.5   0.0      0.39     5e+02      73     122 ..     251     302 ..     228     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpele 124
                  ++   + +l+G+ G+GKStL++ l++  +
   EHU00341.1  28 VRPgTVHALMGENGAGKSTLMKCLIGMYR 56 
                  55447899***************998655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.39
                  HHTTSEEEE--TTT.HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  73 ealgyevllvsakt.kegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  +a+g evl+v+  + ++ +++++  ++  ++  ++G  G+G+S ++++l + 
   EHU00341.1 251 NAIGEEVLTVRHLScQDRFSDVSFGVRRgEILGVAGLVGAGRSEVMESLFGM 302
                  556666666655431577888888887779999**********999999776 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-05     0.013      28      59 ..      33      64 ..      30      78 .. 0.90
   2 ?   -2.3   0.0       2.4   3.1e+03      20      35 ..     386     401 ..     382     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1e-05
                HHHHHS--SHHHHHHHHHHHHHHS--TTT--- CS
        MukB 28 vttlsGgnGaGksttmaafvtaliPdlsllhf 59
                v +l G nGaGkst m +++    Pd+  ++ 
  EHU00341.1 33 VHALMGENGAGKSTLMKCLIGMYRPDQGSIKI 64
                889***********************987765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 EEE-HHHHHHHHHS-- CS
        MukB  20 rtfdldelvttlsGgn 35 
                 +t  +d+++  lsGgn
  EHU00341.1 386 KTPTMDQIINNLSGGN 401
                 56689**********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00028      0.36       7      29 ..      33      55 ..      28     205 .. 0.86
   2 ?    0.7   0.0      0.46   5.9e+02       5      26 ..     279     300 ..     276     307 .. 0.84
   3 ?    1.2   0.0      0.32   4.1e+02      82     128 ..     407     452 ..     374     459 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                + +++Ge G+GK+tl++ l   +
  EHU00341.1 33 VHALMGENGAGKSTLMKCLIGMY 55
                5689*************998777 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.46
      AAA_22   5 agilvvtGesGtGKTtllrrll 26 
                   il v G +G+G++ +++ l+
  EHU00341.1 279 GEILGVAGLVGAGRSEVMESLF 300
                 5677799***********9986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.32
      AAA_22  82 leqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 +++ l a+ +  +li+DE  + ++   ++e+++ +++l+n    gv++i+v
  EHU00341.1 407 IARWLLAQPK--ILILDEPTRgIDvgaKAEIYRLISELAN---RGVAIIMV 452
                 5566666666..******9998878756999999999999...67777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00023      0.29      18      64 ..      27      74 ..      18     157 .. 0.71
   2 ?    1.4   0.0      0.28   3.6e+02      56     116 ..     197     268 ..     175     282 .. 0.72
   3 ?   -2.0   0.0       3.2     4e+03      24      45 ..     279     300 ..     272     302 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdql..e 64
                rvr g   +  l Ge G GKs+l+++l   ++ d g   ++g+ +q+  +
  EHU00341.1 27 RVRPG--TVHALMGENGAGKSTLMKCLIGMYRPDQGSIkIKGEPVQFrdT 74
                45544..45679***************99888886444499999999332 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.28
      AAA_16  56 lrgkcdql...esaipy........salaqalareellrqlldeaesaeleawrekleealaavpelagaea 116
                 ++ k d+    + +i+         s   +a++r +l++++  ++ +++++ +  ++ e++  v++l+++++
  EHU00341.1 197 ISHKMDEIfaiTDEISVfrdgswvgSDSSSAFTRQSLITKMVGRELTQLFPKFNNAIGEEVLTVRHLSCQDR 268
                 55555555444444444455555555688999************9999999999999999999999999866 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.2
      AAA_16  24 pelvllsGesGvGKsslvrell 45 
                 +e++ + G  G G s ++++l+
  EHU00341.1 279 GEILGVAGLVGAGRSEVMESLF 300
                 4789999*********999886 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.3e-05     0.029      21      39 ..      33      51 ..       7      54 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-05
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                + ++ G+NGaGK+T++ ++
  EHU00341.1 33 VHALMGENGAGKSTLMKCL 51
                55789***********998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   0.00041      0.52      18      49 ..      31      62 ..      24     197 .. 0.70
   2 ?   -3.1   0.0       4.2   5.4e+03      22      38 ..     283     299 ..     278     310 .. 0.82
   3 ?    1.3   0.0      0.19   2.5e+02      65     122 ..     382     452 ..     364     454 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00041
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrv 49
                  v++l G  G+GK+t++k l  +++ ++g++
  EHU00341.1 31 GTVHALMGENGAGKSTLMKCLIGMYRPDQGSI 62
                56899***************999998775444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.2
      AAA_30  22 vltGpAGtGKttalkal 38 
                  + G  G+G + ++++l
  EHU00341.1 283 GVAGLVGAGRSEVMESL 299
                 5789999****999876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.19
      AAA_30  65 elgieastiakllkrlk.........grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                  l+i++ t+++++++l          +r+ l++ ++li DE        + +++ +l+++++++g+ +i+v
  EHU00341.1 382 RLNIKTPTMDQIINNLSggnqqkvliARWLLAQPKILILDEPTRGidvgAKAEIYRLISELANRGVAIIMV 452
                 5678999999999888899999999977889999*******765444445667777777777777777776 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.1         5   6.5e+03      67      80 ..      36      49 ..      31      52 .. 0.86
   2 ?    1.2   0.0      0.11   1.3e+02      67      90 ..     284     307 ..     261     311 .. 0.87
   3 ?    9.4   0.0   0.00035      0.45     110     173 ..     397     461 ..     368     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 5
  AFG1_ATPase 67 lwGgvGrGKtylmd 80
                 l G  G GK+ lm 
   EHU00341.1 36 LMGENGAGKSTLMK 49
                 67889*******96 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
  AFG1_ATPase  67 lwGgvGrGKtylmdlffeslpvek 90 
                  + G vG G++ +m++ f  +p++ 
   EHU00341.1 284 VAGLVGAGRSEVMESLFGMVPFDS 307
                  6799***************99865 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00035
  AFG1_ATPase 110 lrkekdplaivadrlaeearvlCfDEfe.vsDiadamllsrLleaLfargvtlvaTSNiaPedLy 173
                  l+++++    +a  l+++ ++l +DE +   D++    + rL+++L +rgv+++  S  +Pe L+
   EHU00341.1 397 LSGGNQQKVLIARWLLAQPKILILDEPTrGIDVGAKAEIYRLISELANRGVAIIMVSSELPEILG 461
                  445555556678889999999999996515799999999**********************9886 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.068        86     243     264 ..      29      51 ..      24      57 .. 0.84
   2 ?   -0.0   0.1      0.23   2.9e+02     328     352 ..     147     171 ..     140     190 .. 0.91
   3 ?    0.7   0.0      0.14   1.8e+02     305     349 ..     379     423 ..     370     427 .. 0.87
   4 ?    4.0   0.0     0.014        17     379     412 ..     438     470 ..     432     482 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.068
                 -SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAl 264
                 + G v +++G +  GKsTL++ l
  EHU00341.1  29 RPGtVHALMGENGAGKSTLMKCL 51 
                 55668999************987 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 328 sqAanimealeagakllLiDEDtsA 352
                  q ++i++a+  +++++++DE tsA
  EHU00341.1 147 QQMVEIAKAVSWNSDIVIMDEPTSA 171
                 57789*******************9 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.14
                 TB---CCC--STTEEESS--HHHHHHHHHHHHHHTT-SEEEEEGG CS
  ABC_ATPase 305 FinnLPegkdttkfstedASGStsqAanimealeagakllLiDED 349
                  i++L  ++ t + + ++ SG   q + i++ l a+ k+l++DE 
  EHU00341.1 379 QIRRLNIKTPTMDQIINNLSGGNQQKVLIARWLLAQPKILILDEP 423
                 577777888899999*****************************6 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.014
                 CHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEE CS
  ABC_ATPase 379 rvrelykklgvstilvvggsgdyldvAdtvilme 412
                 ++ el ++ gv +i+v++ + + l ++d++++m+
  EHU00341.1 438 LISEL-ANRGVAIIMVSSELPEILGMSDRIMVMH 470
                 55666.889************************8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00055      0.71       3      22 ..      35      54 ..      33      87 .. 0.85
   2 ?    0.4   0.0      0.52   6.6e+02       3      21 ..     283     301 ..     281     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00055
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a++G   +GKStL++ l+g 
  EHU00341.1 35 ALMGENGAGKSTLMKCLIGM 54
                799**************984 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.52
                 EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg 21 
                 +++G   +G S ++ +l+g
  EHU00341.1 283 GVAGLVGAGRSEVMESLFG 301
                 79999*******9999987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022      0.28      13      50 ..      20      58 ..      19     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
      AAA_15 13 slkdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                +l++v++ + +  +  l G+N++GKS++++ l  +   +
  EHU00341.1 20 ALDNVSLRVRPGtVHALMGENGAGKSTLMKCLIGMYRPD 58
                56667777777667799*************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 3822.35
//
Query:       EHU00342.1  [L=307]
Description: putative periplasmic binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-61  208.4  20.8    1.6e-61  208.1  20.8    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    2.1e-13   50.4   3.4    2.5e-13   50.1   3.4    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    4.2e-07   30.4   0.0    1.2e-06   29.0   0.0    1.7  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.4e-06   28.3   9.7    2.2e-05   24.3   5.5    2.1  2  Peripla_BP_6  Periplasmic binding protein
  ------ inclusion threshold ------
      0.069   13.9   0.2       0.19   12.5   0.2    1.7  1  Mub_B2        Mub B2-like domain
       0.62   10.5   2.9         40    4.7   0.1    3.2  3  Vault_2       Major Vault Protein repeat domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1  20.8   5.4e-65   1.6e-61       1     258 []      27     281 ..      27     281 .. 0.96

  Alignments for each domain:
  == domain 1  score: 208.1 bits;  conditional E-value: 5.4e-65
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT.GCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd.dapsger 96 
                   +gv++  ++++f + +r+++++  k+  +++++  da++d+a+Q +q++++i +gvd+iiv+pvd++a++p++++a +aG+  v++++  +a+ g++
    EHU00342.1  27 VGVSMAMFDDNFLTIVRNAIQNEMKKDDVKGQI-EDAKGDVAQQLQQVQNFIGQGVDAIIVNPVDTDAVKPIIDQASKAGVALVFVNRKpQAQLGDK 122
                   7999*****************************.6******************************************************99999*** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSC CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltan.pldgilaand 192
                    a+vg d+e aG+lq+e+la++++gk g+v+il G++ +  ++er++g+++v ++yp+ik+v++ ++a  ++++a + +++++ta  ++++i ++nd
    EHU00342.1 123 MAFVGSDSELAGRLQMEALAKAMNGK-GNVAILLGDLANESTRERTKGVEAVVAKYPNIKVVQK-QTAKFSRNDAVDVVSNWMTAGdDINAIASNND 217
                   **************************.***********************************95.6669***************7746********* PP

                   CHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 193 gmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   +ma+ga++al +++  + ++v+g+D+tp al++ik+G++ a+v+qd++++g+ av++av+l+kG+k
    EHU00342.1 218 EMAIGAIQALGKND--KHILVAGVDGTPDALQMIKNGKMVASVFQDAKGQGEGAVQTAVKLVKGEK 281
                   ************65..3355********************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   3.4   8.2e-17   2.5e-13      39     203 ..      63     231 ..      25     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 8.2e-17
                   -SSHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T..TTS-EEEE-HHHHHHHHHHHHHHHHHHHT.GEEEEEE-T CS
  Peripla_BP_1  39 ageeedlakaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap..dgvPcvipddtqageestqkLiaeghkrp.iallegpes 130
                    g+ ++++++++    +g+d++i+   dt+ +  i  +a++ g+  +++++  +a   d +  v  d   ag  + + L +++ +++ +a+l g+  
    EHU00342.1  63 KGDVAQQLQQVQNFIGQGVDAIIVNPVDTDaVKPIIDQASKaGVALVFVNRKPQAQlgDKMAFVGSDSELAGRLQMEALAKAMNGKGnVAILLGDLA 159
                   2333444466666777*********98888888888888888*********9777788999****************************99999888 PP

                   TSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT CS
  Peripla_BP_1 131 altakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeG 203
                   +  ++er++G +a +a+    +k v+  +   +++da + + + +  + +i+ai  +nde+a+Ga++al k+ 
    EHU00342.1 160 NESTRERTKGVEAVVAKYPN-IKVVQKQTAKFSRNDAVDVVSNWMTAGDDINAIASNNDEMAIGAIQALGKND 231
                   8888999***********55.999999999**************************************99987 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.61   1.8e+03     116     116 ..     118     118 ..      36     154 .. 0.57
   2 !   29.0   0.0     4e-10   1.2e-06      11     164 ..     150     296 ..     138     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.61
                   C CS
  Peripla_BP_3 116 a 116
                   +
    EHU00342.1 118 Q 118
                   1 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 4e-10
                   EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTTE CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalll..qalklaalPtAviaasDelAlgvlqalreaglrvPedl 104
                   ++a++   gd  +++ +er++g++ ++ +  ++++ + ++a+   + a ++ ++++   +         A+  ++De+A+g++qal     +    +
    EHU00342.1 150 NVAILL--GDLANESTRERTKGVEAVVaKYPNIKVVQKQTAKFSRNDAVDVVSNWMTagDD------INAIASNNDEMAIGAIQALGKNDKH----I 234
                   667777..67778999***********9999999666666555555555555444222222......26*******************9995....* PP

                   EEEBSS--SCC.CSSSS..--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--G CS
  Peripla_BP_3 105 svigfddsela.alssP..plTtvrqpleelGraaaellldllegekappeqvllppelveRe 164
                    v g+d+++ a ++      + +v q++++ G+ a+++ ++l++gek +++ v +p +l++ +
    EHU00342.1 235 LVAGVDGTPDAlQMIKNgkMVASVFQDAKGQGEGAVQTAVKLVKGEK-VQKIVDIPFQLITKD 296
                   ********9999999887677**********************5554.444444877888765 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   5.5   7.4e-09   2.2e-05      46     231 ..      58     245 ..      44     250 .. 0.84
   2 !    7.2   0.2    0.0012       3.6      23      78 ..     240     290 ..     236     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.4e-09
                   EEEE-TTSHHHHHHHHHHHHHCT--SE.EEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSC.EEEE CS
  Peripla_BP_6  46 verDdaydpdraaeaarrlvdqdgvda.lvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggk.kval 140
                   +++D ++d+++ +++++ ++  +gvda +v p+ +++++ + + + k+gv ++ +    + +  + +  +g +    ++  +e+lak   gk +va+
    EHU00342.1  58 QIEDAKGDVAQQLQQVQNFIG-QGVDAiIVNPVDTDAVKPIIDQASKAGVALVFVNRKPQAQLGDKMAFVGSDSELAGRLQMEALAKAMNGKgNVAI 153
                   689******************.7777615688999999999999999*******999999999**********9999*********98764447776 PP

                   EEES..SHHHHHHHHHHHHHHHCC.TEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHH CS
  Peripla_BP_6 141 vyad..yafgregiaalkaaakaa.Ggevvgeepvplgttdfsaqvlqikaagada.vllagtgadlaallkaaaeaGldakrillvswsgseed 231
                   +  d  + + re  ++++a+++++  ++vv+  + +++ +d   +v + + ag d+  ++++  ++++ +++a+ +++   k+il+++ +g++  
    EHU00342.1 154 LLGDlaNESTRERTKGVEAVVAKYpNIKVVQKQTAKFSRNDAVDVVSNWMTAGDDInAIASNNDEMAIGAIQALGKND---KHILVAGVDGTPDA 245
                   6555459999**************8899****************************7777777777777777665554...44888777776655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0012
                   HHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BS CS
  Peripla_BP_6  23 agaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgpls 78 
                   +g+ +a+  i      nG+ +  v  D +++ ++a++ a +lv +++v+ +v+  +
    EHU00342.1 240 DGTPDALQMI-----KNGKMVASVFQDAKGQGEGAVQTAVKLVKGEKVQKIVDIPF 290
                   5666666666.....2899*****************************99998765 PP

>> Mub_B2  Mub B2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   6.4e-05      0.19      19      50 ..     184     214 ..     170     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.4e-05
                 EEEEEEEEEEEEEETTT--EE..EEEE--EE- CS
      Mub_B2  19 vtqtvtftrtatvDkVTgWtatgsttfaavtS 50 
                 ++qt++f+r+  vD V +W ++g+ + +a+ S
  EHU00342.1 184 QKQTAKFSRNDAVDVVSNWMTAGD-DINAIAS 214
                 799****************99444.6777765 PP

>> Vault_2  Major Vault Protein repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.013        40      11      48 ..      41      76 ..      31      80 .. 0.86
   2 ?    3.9   0.1     0.024        72      11      32 ..      84     104 ..      82     109 .. 0.84
   3 ?    0.2   0.0      0.34     1e+03      16      50 ..     258     292 ..     254     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.013
     Vault_2 11 vvknPvkrdekgqpvldeyGqaklakGdkevRlaq.dpF 48
                +v+n ++++ k++   d+ Gq + akGd+   l+q + F
  EHU00342.1 41 IVRNAIQNEMKKD---DVKGQIEDAKGDVAQQLQQvQNF 76
                89*********88...************98777776555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.024
     Vault_2  11 vvknPvkrdekgqpvldeyGqa 32 
                 +++nPv+ d+  +p++d+  +a
  EHU00342.1  84 IIVNPVDTDAV-KPIIDQASKA 104
                 89*******99.7899987765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.34
     Vault_2  16 vkrdekgqpvldeyGqaklakGdkevRlaqdpFpL 50 
                 v +d+kgq +  +   +kl+kG+k  ++ + pF L
  EHU00342.1 258 VFQDAKGQGEGAVQTAVKLVKGEKVQKIVDIPFQL 292
                 55677777777777889999999998888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2590.16
//
Query:       EHU00343.1  [L=420]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-21   75.8   0.2      6e-21   74.6   0.2    1.7  1  Arm-DNA-bind_3   Arm DNA-binding domain
    7.4e-20   71.4   0.6    2.7e-19   69.6   0.1    1.9  2  Phage_integrase  Phage integrase family
     0.0054   15.7   0.1      0.011   14.7   0.1    1.4  1  DUF3435          Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.2     1e-24     6e-21       1      74 []       3      88 ..       3      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 1e-24
  Arm-DNA-bind_3  1 LTdkaikaladsd.kklprd..GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekkae 74
                    LTd + k++++ + +++ +d  G++lrvtp+G+k++++ yr         +G ypavsl++AR++++e+r+l+aqGiDP+++k+ae
      EHU00343.1  3 LTDIKAKNAKPLEkEYKLTDgfGMFLRVTPKGSKYWQMAYRfegkqklfsIGVYPAVSLSDARQRRDEARRLLAQGIDPNAKKQAE 88
                    799999997766633333348****************999999****9888*******************************9985 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.12   7.2e+02      36      82 ..      67     114 ..      61     188 .. 0.67
   2 !   69.6   0.1   4.4e-23   2.7e-19       3     171 ..     208     391 ..     206     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
                      -HHHHTT-BGGGEECT.TTEEEEEEEECSSSSEEEEECTHHHHHHHHH CS
  Phage_integrase  36 RisEllsLrvkdldle.ngvilvheregKgskeravplseealellke 82 
                      R  E+++L  + +d + ++ + v+e + K+ k r+ ++  +a  + k+
       EHU00343.1  67 RRDEARRLLAQGIDPNaKKQAEVKELKAKRDKTRTFTVVAKAWFSTKT 114
                      777777887777776514567786666666666777666444444333 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 4.4e-23
                      HHHHHHHHHHHCCGCHHHHHHHHH..HHHHHHHT--HHHHTT-BGGGEECTTTEEEEE............EEECSSSSEEEEECTHHHHHHHHH CS
  Phage_integrase   3 ltedeverllaaleeslkirdkll..lellyetGlRisEllsLrvkdldlengvilvh............eregKgskeravplseealellke 82 
                      l+ +e+ +ll+ + e  k r+ ++  ++l +   +R sEl+  r++++d++ + + ++            +r  K+++++ vpl ++a++ lke
       EHU00343.1 208 LELEEIPQLLKKITE-YKGRRLTIlaIQLNLMIFIRSSELRFARWSEIDFKSKLWVIPeqreaienvkhsTRGAKMKRKHFVPLCKQAMRILKE 300
                      677899999999999.4445544434777777889**********************************99999******************** PP

                      HHHHHCHCCTTTSBSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHC.TSHHHHHHHHT-SSCCHH.HHHHCCCH CS
  Phage_integrase  83 llskaleeaeksellfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleag.vdlrvvqkllGHssistt.qiYthvak 171
                      + + ++ee +++ l+f       kp+s++t++ka++++++ ++ +  + +H +R  +++aL+e+g ++ ++v+  + H++ +++   Yth+ak
       EHU00343.1 301 IRQLTYEEGNDDGLIFTGCydSFKPMSENTINKALRNMGYDTKQD--ICGHGFRTLACSALIESGlWSEDAVELQMSHKESNSVrAAYTHKAK 391
                      ****************8887799******************8877..******************7799***************99****986 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.8e-06     0.011     171     250 ..     324     401 ..     319     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-06
     DUF3435 171 ealtastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHassrtFlkhYlsqkvdkdvqavvlg 250
                 ++++++t+n++l+++g ++  +++i  + +R  a  al eSg  se   +l + H++s+   + Y ++  + d ++++l+
  EHU00343.1 324 KPMSENTINKALRNMGYDT--KQDICGHGFRTLACSALIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQ 401
                 69***************98..588999******************************99999***999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2962.80
//
Query:       EHU00344.1  [L=171]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-43  146.9  13.7    4.8e-43  146.9  13.7    1.8  2  MCPsignal     Methyl-accepting chemotaxis protein (MCP) signa
  ------ inclusion threshold ------
      0.058   13.7   0.1       0.14   12.4   0.1    1.6  1  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9  13.7   5.4e-47   4.8e-43      23     172 .]       3     138 ..       1     138 [. 0.98
   2 ?   -0.6   0.2      0.11   9.9e+02     148     162 ..     152     166 ..     139     170 .. 0.48

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 5.4e-47
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHH CS
   MCPsignal  23 kqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkeindsvesleetrqrveegse 121
                 ++m++i++s+ ++ di++Vi++ia+QTN+LALNAa+EAARAGe GrGFaVVA+EVr+LA+rsa aak+i++li              e+++ +v++g+e
  EHU00344.1   3 DTMHNIHESAVKVRDITSVIESIAFQTNILALNAAVEAARAGEDGRGFAVVAGEVRTLAQRSATAAKDIKRLI--------------EQAVAHVDSGVE 87 
                 79***********************************************************************..............99********** PP

                 HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 122 lveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                 +++ tg+++ ++ ++v+++a+ ++ ia+as+eq ++i+ev+ av++++ vt
  EHU00344.1  88 IAALTGQSVLKVMSMVSDLAEGMDSIARASSEQLQGISEVSVAVNQMDGVT 138
                 ************************************************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHH CS
   MCPsignal 148 aaaseeqsasieevn 162
                 +++ +eq++++ ++ 
  EHU00344.1 152 SRSLSEQAQTLRQIV 166
                 233345555555554 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.6e-05      0.14      22      74 ..      29      80 ..      26      91 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
                  -SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE CS
  Mur_ligase_C 22 hnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads 74
                  +n+ +l+aa++a+r   + +   +v+g+ + l +r++t  ++++rl ++++  
    EHU00344.1 29 TNILALNAAVEAARAGEDGRGFAVVAGEVRTLAQRSATAAKDIKRLIEQAV-A 80
                  7999************9999999************************9944.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1364.23
//
Query:       EHU00345.1  [L=104]
Description: putative ArsR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   33.9   0.1    1.3e-07   31.5   0.1    1.9  1  HTH_20    Helix-turn-helix domain
    0.00033   20.5   0.0     0.0073   16.2   0.1    2.2  2  HTH_5     Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
       0.04   13.8   0.0       0.06   13.2   0.0    1.4  1  MarR_2    MarR family
       0.15   11.6   0.0       0.29   10.7   0.0    1.5  1  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1     3e-11   1.3e-07       3      60 ..       6      78 ..       4      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3e-11
                HHHHHS-HHHHHHHHHH...............STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  3 iaeALahPvRrrilraL...............araegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                ++++La+P+R ++l++L                +  g++as + +  +ls+   s  L++L +agL+e  ++g
  EHU00345.1  6 AIKLLANPTRVAVLKWLkrpdeafadysqlypFDQYGVCASLIQDKAGLSQPATSLCLKALHDAGLLEASKVG 78
                6899****************************9***********************************99887 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.039   1.7e+02       1      13 [.      12      24 ..      12      31 .. 0.82
   2 !   16.2   0.1   1.6e-06    0.0073      19      46 ..      46      73 ..      43      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.039
                SHHHHHHHHHHTT CS
       HTH_5  1 dptRlkILklLae 13
                +ptR+ +Lk L +
  EHU00345.1 12 NPTRVAVLKWLKR 24
                69******99977 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.6e-06
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 19 celaeelglsqstvShHLkkLreaGLVe 46
                + + ++ glsq+++S  Lk+L++aGL+e
  EHU00345.1 46 SLIQDKAGLSQPATSLCLKALHDAGLLE 73
                5567889*******************86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05      0.06       6      54 ..      14      75 ..      10      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHHCTTTS.............EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  6 aqarvLaaLgrrpgr.............dltvgelarrlglsksavsrilkrLvaaGLverr 54
                +   vL +L r ++               + ++ + ++ gls++a+s  lk L +aGL+e +
  EHU00345.1 14 TRVAVLKWLKRPDEAfadysqlypfdqyGVCASLIQDKAGLSQPATSLCLKALHDAGLLEAS 75
                556666666666655666666666655555688899999********************976 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.4e-05      0.29      23      47 ..      48      72 ..      41      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.4e-05
      HTH_24 23 LAerlglSpstvnrrlkrLeeeGlI 47
                + ++ glS+++++ +lk L ++Gl+
  EHU00345.1 48 IQDKAGLSQPATSLCLKALHDAGLL 72
                8899*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 832.23
//
Query:       EHU00346.1  [L=372]
Description: Oye family NADH-dependent flavin oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-85  285.9   0.0    5.2e-85  285.7   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
     0.0044   16.5   0.0       0.23   10.9   0.0    2.3  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.7   0.0   5.8e-89   5.2e-85       1     342 []       3     349 ..       3     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 285.7 bits;  conditional E-value: 5.8e-89
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +LF+P+++g+ tL+nRi+ +p+tr r++++gn++  +++eyy+qra+   + +ite++ ++p ++g+   pgi+++ qi++wr++t+avh++g+ ++
    EHU00346.1   3 SLFTPLTLGDLTLRNRIALPPLTRCRSEQPGNIPGTMMVEYYRQRAS--AGFMITEGTQIEPRGQGYAWTPGIHSDAQIAGWRNVTDAVHAEGGTLF 97 
                   59*********************************************..99********************************************** PP

                   EEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-............S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH CS
  Oxidored_FMN  98 vqlwhlGreakseyladqevdspsdpvaldaqee...........esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFl 183
                    qlwh Gr ++   ++ ++   p +p+a+ a+               +e  +++elt +e+k ++  +  AA++a++AgfDgVe h+anGYL+nqF+
    EHU00346.1  98 CQLWHVGRVSHNALQPGKQ--PPVAPSAVAASGVrvfietgpgagMLTESSMPRELTTSEVKAIVAMYRTAAENAKKAGFDGVELHAANGYLINQFI 192
                   **********999988877..444444444443344477999997444444499******************************************* PP

                   -TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS....--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTT CS
  Oxidored_FMN 184 spksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekg....ldfaet...aqkivllkelekrlkdgkklalvhaaeprkrga 273
                   s ++n rtDeygGsl+nR+rFl+ev +aV  + g++rvg+R++p    +++    l+ +e    a +i +++ l++ +  + ++a +++++      
    EHU00346.1 193 SEHTNFRTDEYGGSLDNRLRFLREVTEAVSAVFGSHRVGVRFAPLFSSTEEervyLGLVERdphATYIRAAQMLNELETGYLSIAEADWDN------ 283
                   ******************************************9964433331111456777644444444444444444444455555544...... PP

                   THHHCCTTHHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 274 gsvrteqekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                    +   e  ++   ++e    p++  gr+++e+ a+ ++++g  dL ++gR f+a+pdl+ + k g pln
    EHU00346.1 284 SPEMPE--SFRIALRETFRSPIMYSGRYTREK-AERMLEKGWGDLFGFGRTFIANPDLPARFKMGYPLN 349
                   444444..66678******************9.******************************999876 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0051        46     121     146 ..     125     158 ..     119     165 .. 0.75
   2 !   10.9   0.0   2.5e-05      0.23       2      94 ..     168     281 ..     167     326 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0051
                   HHHTSEEEEE--TTTTSSSTC........HHHHH CS
  AP_endonuc_2 121 ekegvklalEtlagsgvelgd........eelar 146
                   ++ gv++ +Et++g+g+ +          +e+++
    EHU00346.1 125 AASGVRVFIETGPGAGMLTESsmprelttSEVKA 158
                   579*************987766665555555555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.5e-05
                   HHHHHCT-SEEEEECCTCSHHHHC...............HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS......HHHHHHHHHHHHH CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvsel...............sdeelrelrkaldelglriaslslftrfgypdederear......reesvdalkraie 77 
                   + a++aGfdgvEl+ ++++ + +                 d +lr lr+  ++      s++   rf  ++ +  e+r      +++  + + ra++
    EHU00346.1 168 ENAKKAGFDGVELHAANGYLINQFisehtnfrtdeyggsLDNRLRFLREVTEAVSAVFGSHRVGVRFAPLFSSTEEERvylglvERDPHATYIRAAQ 264
                   579*****************98779999999999999988888888888888888888888888888888888555556777777777788888888 PP

                   HHHHHTBSEEEEEBCCG CS
  AP_endonuc_2  78 laaaLGapllvlhpGta 94 
                   + ++L + +l +   ++
    EHU00346.1 265 MLNELETGYLSIAEADW 281
                   88888888888874434 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2599.05
//
Query:       EHU00347.1  [L=183]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-08   33.7   0.0    4.1e-08   33.5   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.9e-07   29.6   0.0      1e-06   29.1   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.6e-05   23.7   0.0    4.9e-05   23.3   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.8e-12   4.1e-08      32     117 .]      73     152 ..      29     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 6.8e-12
                     TCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  32 aegllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklGF 117
                     +++l++  ++  + iGf+++  +     ++++i +l++speyr  GlGs Ll  ++ +    g+++i  l      d a+ ++e+ GF
      EHU00347.1  73 NSSLCFgLYRHTRQIGFARVVTDMA---ETWVIQDLFISPEYRYIGLGSWLLHCCLTHPSASGCHRIiAL-----SDSAQDFLERNGF 152
                     44566645566889****9999999...9****************************88888**998577.....7789******999 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.7e-10     1e-06       5      75 ..      77     153 ..      73     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.7e-10
                     EEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea..ae...kgiileqlelnaekaikfYeklGFe 75 
                     +f +++  +++Gf++++ +      i  l+++peyr  G+G+ Ll +   +   +g++ +   l++  a++f e++GF+
      EHU00347.1  77 CFGLYRHTRQIGFARVVTDMaetWVIQDLFISPEYRYIGLGSWLLHCclTHpsaSGCHRI-IALSD-SAQDFLERNGFI 153
                     66677778899****9999866444444*****************964522555887533.35544.79*********6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   8.2e-09   4.9e-05      29     109 ..      73     155 ..      53     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.2e-09
  Acetyltransf_10  29 gealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav 109
                      ++ l++++++ ++ +G++++ +d      i+ lf++peyr  G+g+ Ll+ ++++ +  g +    +  s+ a++f e+ GF ++
       EHU00347.1  73 NSSLCFGLYRHTRQIGFARVvTDMAetwVIQDLFISPEYRYIGLGSWLLHCCLTHPSASGCH--RIIALSDSAQDFLERNGFICH 155
                      5667999***********9966655888***************************7666655..45666779999****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1302.44
//
Query:       EHU00348.1  [L=434]
Description: UDP-forming alpha,alpha-trehalose-phosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-97  324.6   0.0    1.2e-96  324.3   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.3   0.0  6.7e-101   1.2e-96      71     471 ..      14     407 ..       4     409 .. 0.96

  Alignments for each domain:
  == domain 1  score: 324.3 bits;  conditional E-value: 6.7e-101
                      HCCCCCEEEEEE-HHHHHHHCCCHHHHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCT CS
  Glyco_transf_20  71 leekfsvvpvflsdekveeyyngfsksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkle 164
                      ++  ++ +++ ls+ +v+e y+++  + LWp++H    ++++  +f    +++Y+k+n+++A  i++++ ++d+iw++DYhL+ ++++lR+   
       EHU00348.1  14 QKGPYETLTFPLSSAEVKEGYHHYIHQGLWPVFH----QRPDLARFSADGYREYKKINEAYARVICDNAMPEDTIWIQDYHLLGCAHYLREAGL 103
                      556677889999**********************....6778**************************************************** PP

                      TSEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCS CS
  Glyco_transf_20 165 dakigfflHiPFPsseifriLpvreeilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkk 258
                       + +gfflH PFPs  +f ++p  + + ++ll +dl+GF+t ++ ++F+  +++  + e  s    v+++gr v+++++p+gid ++++    +
       EHU00348.1 104 TNPVGFFLHQPFPSGTMFEAIPDWRWLTQSLLCCDLLGFQTVQDLNNFIVWLESEFRTERLSVD-SVRVQGRIVKLGVFPVGIDLDDVRCLRDS 196
                      ********************************************************99999985.5**************************** PP

                      CHHHHHHHHHHHHT.TTSEEEEEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB- CS
  Glyco_transf_20 259 esvsekvkelkerfenkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldyt 352
                      +s +    + +e++ +  + +l+   lD++ G++ ++ a e +L+++  ++++++l+q+a+p+++      ++++++e l g+ Ng+ g +++ 
       EHU00348.1 197 NSCAFMEMQCRESLPE--NTVLSGGHLDESAGLPYRISAVEVLLRKHAVYQKNITLLQLAPPAAGYADRAAAVTHTLETLCGEFNGMHGMMNWY 288
                      **************87..5999************************************************************************ PP

                      SEEEEES---HHHHHHHHHH-SEEEE--SSBSS-CHHHHHHHCSTT.T--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHH CS
  Glyco_transf_20 353 PvvylersldfeeliallaaadvllvtslRdGmnlvakeyvvcqqe.kkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeer 445
                      Pv  l++  ++ee + +++a+ v+lvt+l  Gm+l+ak yv+ q+  + gvLiLS+FaGaa+++  +a++vNP+d +++a+ai++aL m+  er
       EHU00348.1 289 PVNCLTHAYSREEQAGIYRASRVALVTPLMSGMSLMAKMYVALQDPeNPGVLILSQFAGAAEQMD-GALIVNPYDPDAMADAIHSALLMPLRER 381
                      ********************************************98689***************9.88************************** PP

                      HHHHHHHHHHHHHT-HHHHHHHHHHH CS
  Glyco_transf_20 446 kkrekkllkqvskhdvqsWaesflse 471
                      ++ + +l+k +  hd+++Wae fls 
       EHU00348.1 382 RHLHARLMKGLHLHDSHHWAEAFLSV 407
                      ***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3234.17
//
Query:       EHU00349.1  [L=165]
Description: glutathione peroxidase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-41  140.7   0.0    1.4e-41  140.4   0.0    1.1  1  GSHPx     Glutathione peroxidase
    3.2e-05   23.8   0.0    4.3e-05   23.4   0.0    1.2  1  AhpC-TSA  AhpC/TSA family
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.034   13.8   0.0    1.3  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.0   2.4e-45   1.4e-41       1     108 []       4     111 ..       4     111 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 2.4e-45
                 GGGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSSSTT CS
       GSHPx   1 iyelsakdidgekvkleklrgkvvlivnvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievnGek 99 
                 +y+lsa+ ++ge +++  ++gkvvl+vn as+Cg+t+qy  le+l+k+y+d+glv+lgfPCnqfg+qepg+ ++i++ ++ +y+v  +++ek+evnG  
  EHU00349.1   4 FYQLSATRLHGERITMADYAGKVVLVVNTASHCGFTPQYAGLEALYKKYADQGLVVLGFPCNQFGRQEPGNADDIAQTCHINYGVSLPMFEKVEVNGAA 102
                 79************************************************************************************************* PP

                 B-HHHHHHH CS
       GSHPx 100 edplykflk 108
                 ++p+++flk
  EHU00349.1 103 AHPVFRFLK 111
                 *******98 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.1e-09   4.3e-05       8      67 ..       7      64 ..       2      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 7.1e-09
                -EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES CS
    AhpC-TSA  8 felknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv 67
                 ++++ +ge ++++dy+gk+v+++ +++ +c ++  +   l++ly++++++g+ v+g  +
  EHU00349.1  7 LSATRLHGERITMADYAGKVVLVVNTAS-HCGFT-PQYAGLEALYKKYADQGLVVLGFPC 64
                678899************7666666666.99987.67889****************9766 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.7e-06     0.034      13      67 ..       9      61 ..       2      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-06
                EETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEE CS
     Redoxin 13 laatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvva 67
                 +  +g+ ++ ++++gk+v+v+  ++ +c+   + +  le l++++++ g  v++
  EHU00349.1  9 ATRLHGERITMADYAGKVVLVVNTAS-HCGFTPQYA-GLEALYKKYADQGLVVLG 61
                56789*********************.***966655.9*******9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1180.70
//
Query:       EHU00350.1  [L=77]
Description: hypothetical protein CKS_2475 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00039   20.2   0.1    0.00049   19.9   0.1    1.2  1  YmgB      Biofilm development protein YmgB/AriR


Domain annotation for each model (and alignments):
>> YmgB  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   2.7e-08   0.00049       2      48 ..      26      72 ..      25      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.7e-08
                HHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHT---HHHHHHHHHH CS
        YmgB  2 EtevLgaiireilasggkvtnKaIIlkLiekLEsesdvvqldvyRqa 48
                 +e Lg ++ eil  g++++ Ka+  +Lie++++ s+ ++ + + ++
  EHU00350.1 26 QQETLGVVVVEILRAGRTLNRKALCKSLIERMSHVSSPQEEEHLQEL 72
                6899****************************998876666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 601.19
//
Query:       EHU00351.1  [L=91]
Description: hypothetical protein CKS_2474 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.6   1.5      0.022   14.5   1.5    1.1  1  FEZ       FEZ-like protein


Domain annotation for each model (and alignments):
>> FEZ  FEZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.5   1.2e-06     0.022      88     153 ..       4      67 ..       1      88 [. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-06
         FEZ  88 sddeelreqldmHslilsglneepllTaeqVieEieeimqespdpeeeeeesssdlsilseeveek 153
                 s de+lr+ l      l +l+e+  +T   V+e ++ im +s+++e+++ +s    s ++ +++++
  EHU00351.1   4 SKDEKLRDTLIG-EAALASLEEQGSVTFKSVLENLDTIMRSSDSEEKSRAVSM-AISEIKADMAAR 67 
                 678888888766.55678999*********************99554444433.434444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 736.17
//
Query:       EHU00352.1  [L=37]
Description: hypothetical protein CKS_2473 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 316.87
//
Query:       EHU00353.1  [L=86]
Description: hypothetical protein CKS_2472 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 664.24
//
Query:       EHU00354.1  [L=492]
Description: sulfate permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-55  187.1  31.3    6.4e-29  100.9  14.4    2.3  2  Sulfate_transp  Sulfate permease family
    2.7e-12   46.4   0.1    4.6e-12   45.6   0.1    1.3  1  STAS            STAS domain
    0.00024   21.5  34.5     0.0012   19.2   6.4    4.1  4  MFS_MOT1        Molybdate transporter of MFS superfamily
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.029   14.7   0.0    1.7  1  STAS_2          STAS domain
       0.19   11.7   1.7       0.41   10.7   1.7    1.5  1  BmKX            BmKX
          2    7.3  12.0      0.029   13.4   4.7    1.7  2  Gaa1            Gaa1-like, GPI transamidase component


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9  14.4   2.1e-32   6.4e-29       2     138 ..      15     144 ..      14     152 .. 0.97
   2 !   93.1   7.6     5e-30   1.5e-26     190     376 ..     165     351 ..     155     356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 2.1e-32
  Sulfate_transp   2 kgDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviqv 96 
                     +gD++aGi+val +iP a+a++++ag++p++gLys+++ ++v a++G+ + +++ ++++++l++ +++++        g++ ++++++l+G++q+
      EHU00354.1  15 RGDVLAGIVVALALIPEAIAFSIIAGVDPQVGLYSAFCIPFVMAFLGGRPAMISSATGAMALLMVTLVKEH-------GLQYLLATSVLTGLLQL 102
                     69*******************************************************************77.......***************** PP

  Sulfate_transp  97 llGllRLgflveflseavlsGfiaGaaivillsqikvllgle 138
                     l+G lRLg l++++s++v++Gf+ + ai i+++q+ +l+ ++
      EHU00354.1 103 LAGYLRLGSLMRYVSRSVVTGFVNALAILIFMAQLPELTHVS 144
                     *************************************99886 PP

  == domain 2  score: 93.1 bits;  conditional E-value: 5e-30
  Sulfate_transp 190 vipapaelvavivatlvsaifelkreagvkivgeipsglpelslp..kvdwsllsallpdalaialvglleaiavsksldkkkgykvdsnkELvA 282
                        +p +lv +iv t +s+ + +++ + v  +g++p  lp + +p   +++ +l  +lp a+ +a+vglle++ ++  +d ++++  d n+E  A
      EHU00354.1 165 TKAIPSPLVCIIVLTAISVWL-HLDVRTVGDMGRLPGSLPVFLIPdiPLNFHTLLIILPYAAGLAVVGLLESMMTATIVDDMTDTGSDKNRECKA 258
                     567899***************.788888888**************77789999****************************************** PP

  Sulfate_transp 283 lGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkelkklwklskldfli 376
                     +G++Ni  +++gg++  + + +s++n+k+G++ +ls+l  ++v+ll++++l + ++ iP+a+L a++i++ +g   +++++ +l+    +  ++
      EHU00354.1 259 QGIANICTAFIGGMAGCAMIGQSVINVKSGGRGRLSTLTAGVVLLLMVVFLRQWVSQIPMAALVAVMIMVSVG-TFSWQSIANLRTHPMSTSVV 351
                     **************************************************************99999988888.78888888887644444444 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1   1.5e-15   4.6e-12       5     105 ..     393     482 ..     389     489 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.5e-15
                 EECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCGG CS
        STAS   5 eeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgffd 103
                 e++ +  i++++g+++fa++++f+++ +  ++ e            +i+d ++ +f+D ++v+aL +i+ +++r g ev l +++ +    ++++g++d
  EHU00354.1 393 ERQGNTRIYTVTGQVFFASSDRFTRHFDVSEEVE-----------RVIIDVTHAHFWDITSVSALDRIVIKFRREGTEVGLRGMNAATQTLVDRLGVHD 480
                 677788********************99988876...........7***************************************************99 PP

                 CC CS
        STAS 104 ev 105
                 + 
  EHU00354.1 481 KP 482
                 87 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   8.2     0.001         3      11     109 ..      25     130 ..      19     132 .. 0.77
   2 !    7.2   0.6    0.0022       6.6      66     107 ..     139     180 ..     129     182 .. 0.84
   3 !   19.2   6.4   4.1e-07    0.0012      25     108 ..     231     329 ..     205     332 .. 0.77
   4 ?    0.4   0.3      0.29   8.7e+02      70      88 ..     348     366 ..     336     398 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
    MFS_MOT1  11 glTllnlvialaalaslsltalllsvGlmnlltglfggvPmc......hgAgglaaqyrf.....gartgaagillGlvllllgltgllerllrliPks 98 
                 +l l++ +ia +++a+++++  l s+  + ++++++gg P        ++A  +++          + + a  +l+Gl+ ll g+++ l  l+r++ +s
  EHU00354.1  25 ALALIPEAIAFSIIAGVDPQVGLYSAFCIPFVMAFLGGRPAMissatgAMALLMVT---LvkehgLQYLLATSVLTGLLQLLAGYLR-LGSLMRYVSRS 119
                 56799********************99*************9988863333333333...2345745555556666666666666665.99********* PP

    MFS_MOT1  99 vlgglllgaGl 109
                 v+ g + ++++
  EHU00354.1 120 VVTGFVNALAI 130
                 ****9988776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0022
    MFS_MOT1  66 artgaagillGlvllllgltgllerllrliPksvlgglllga 107
                 + t ++  +++l+   lg++ l+ r++++iP +++ +++l a
  EHU00354.1 139 ELTHVSWQVYALTAAGLGIIYLFPRITKAIPSPLVCIIVLTA 180
                 5566777888999999**********************9965 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 4.1e-07
    MFS_MOT1  25 a.................slsltalllsvGlmnlltglfggvPmchgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllg 106
                                   + + ++ +   G++n++t+++gg+  c++ g  + ++++g r   + +  G+vlll+ +++  ++ ++ iP++ l +++++
  EHU00354.1 231 GllesmmtativddmtdtGSDKNRECKAQGIANICTAFIGGMAGCAMIGQSVINVKSGGRGRLSTLTAGVVLLLMVVFL--RQWVSQIPMAALVAVMIM 327
                 15555555555556777755788999999****************99999999999**************999998885..888888999888888777 PP

    MFS_MOT1 107 aG 108
                 + 
  EHU00354.1 328 VS 329
                 65 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.29
    MFS_MOT1  70 aagillGlvllllgltgll 88 
                 +++++l+ v+++++  +l 
  EHU00354.1 348 TSVVMLATVVVVVATHNLA 366
                 4444444444444443321 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.6e-06     0.029      27      79 ..     426     478 ..     403     479 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.6e-06
      STAS_2  27 aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79 
                 ++v +D+++  + D + +++L + +   r++g  + lrg++ a ++l+d++G+
  EHU00354.1 426 ERVIIDVTHAHFWDITSVSALDRIVIKFRREGTEVGLRGMNAATQTLVDRLGV 478
                 5899************************************************8 PP

>> BmKX  BmKX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   0.00014      0.41       3      20 ..     253     270 ..     253     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
        BmKX   3 nGECkakgeAamCTaGtd 20 
                 n ECka+g A++CTa  +
  EHU00354.1 253 NRECKAQGIANICTAFIG 270
                 56************9555 PP

>> Gaa1  Gaa1-like, GPI transamidase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.7      0.78   2.3e+03     316     316 ..     123     123 ..      42     189 .. 0.54
   2 ?   13.4   4.7   9.7e-06     0.029     341     414 ..     319     388 ..     214     412 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.78
        Gaa1 316 g 316
                 g
  EHU00354.1 123 G 123
                 1 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.7e-06
        Gaa1 341 lalllltvlllllplllslllkrllkakeqkvellksvsllllglllsalallNfSLallvallavPltfiar....p 414
                  al+++++++++  +  +       + ++   + + s s+++l+++++++a++N +L++l+++l++ l f  +    +
  EHU00354.1 319 AALVAVMIMVSVGTFSWQ-------SIANLRTHPM-STSVVMLATVVVVVATHNLALGVLIGVLIASLNFATKvarfM 388
                 111111111111111111.......1122333343.78999*************************999998755542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.21s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3711.94
//
Query:       EHU00355.1  [L=230]
Description: cryptic haloacid dehalogenase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-15   58.3   0.0    5.5e-15   55.9   0.0    1.9  1  HAD_2           Haloacid dehalogenase-like hydrolase
    4.6e-12   46.7   0.0    1.2e-10   42.0   0.0    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
    0.00093   19.2   0.0     0.0017   18.4   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.015   15.7   0.0    1.2  1  HAD             haloacid dehalogenase-like hydrolase
       0.02   15.0   0.0      0.033   14.3   0.0    1.4  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.5e-18   5.5e-15       3     177 ..      16     198 ..      14     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.5e-18
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee...........kieellrkyneekkkkevkpydgvkelLee 90 
                 FD+  Tlldt +l + ++++l ++    e  e  + +l++ sl e++  + +s                 i+ l +          +  +++v + L  
  EHU00355.1  16 FDVNETLLDTAPLKACVVRRLGNKP---ERAEAWFTSLLHYSLVESVTGSWHSFGDIAeavlqmtaecyGITPLPDATSLADALSAMPAFPDVADGLSA 111
                 8888888888888888888888665...5555555666666665555555554443334556665555533444333333333367899********** PP

       HAD_2  91 LkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 Lk++g++l   T++s++ +e++l+q g+ s+F+ +++ e  +  KPd +v++ a++++k  + ++++v  +  D+ +ak+ag+k++ 
  EHU00355.1 112 LKSHGLTLVALTNSSQALAEKQLSQAGLSSFFSRVLSVESLQVYKPDLRVYRWAMDEMKQPATSCMMVAAHGWDVGGAKRAGMKTAF 198
                 ************************************************************************************986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.4e-14   1.2e-10      75     210 .]      45     193 ..      11     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 3.4e-14
                 HHHHHHHCHHHHHHHHHHHHHHCHHHHHH..............TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
   Hydrolase  75 ewltaldippdlgaaigsaqsqgrtvall..............qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.dd 158
                  w+t+l  ++ +++ +gs+ s g ++  +              +a  la+   a p   +p++a+ + +Lk+ g+ +v lt+++++ ae+ ++q+G   
  EHU00355.1  45 AWFTSLLHYSLVESVTGSWHSFGDIAEAVlqmtaecygitplpDATSLADALSAMP--AFPDVADGLSALKSHGLTLVALTNSSQALAEKQLSQAGlSS 141
                 37777777777778888888888887777888888888888888************..**************************************999 PP

                 GESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 159 yfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +f+ v++++   v kp+ + ++ a++e++ +   ++mV    +D+ ++++Ag
  EHU00355.1 142 FFSRVLSVESLQVYKPDLRVYRWAMDEMKQPATSCMMVAAHGWDVGGAKRAG 193
                 99************************************99999999999997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.6e-07    0.0017       4      73 ..     156     221 ..     153     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.6e-07
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     KP   +y+ a+ +++ +   ++m+      D+ gA++aG+k++++++   +p  l+    +p++++ d+ 
      EHU00355.1 156 KPDLRVYRWAMDEMKQPATSCMMVAAH-GWDVGGAKRAGMKTAFIARPGQTPFPLA---PEPDVIVRDIG 221
                     9999***********************.****************999666665544...56888888775 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   4.2e-06     0.015       2     130 ..      15     141 ..      14     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.2e-06
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprl..wralreklllal....frellrldraglaelleallaglseelaaelerfvaevirpklldpgalell 94 
                 +fD++ TLld+ +l + + ++l+++++r+  w + +  + l       ++ + +  +++ ++ ++ ++  + ++a  l++++   + p+ + p++ + l
  EHU00355.1  15 FFDVNETLLDTAPLKACVVRRLGNKPERAeaWFTSLLHYSLVEsvtgSWHSFGDIAEAVLQMTAECYGITPLPDATSLADAL--SAMPA-F-PDVADGL 109
                 9**********99997777699998887755444444433333557644444444566666666666666677777777777..45555.7.8999999 PP

         HAD  95 aahraaGdrvvvvSgglrplvepllaelgadevlat 130
                 +a ++ G ++v ++++ + l+e  l + g    l++
  EHU00355.1 110 SALKSHGLTLVALTNSSQALAEKQLSQAG----LSS 141
                 9999*********************9999....666 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.2e-06     0.033      15      53 ..     101     136 ..      95     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.2e-06
                  E-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHH CS
  Hydrolase_6  15 aipgaaealnalraagkpvvllTNnsskseeeyakklek 53 
                  a+p +a+ l al+++g ++v lTN+s+   e+   +l++
   EHU00355.1 101 AFPDVADGLSALKSHGLTLVALTNSSQALAEK---QLSQ 136
                  89**********************99877544...3344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1820.15
//
Query:       EHU00356.1  [L=82]
Description: uncharacterized DUF2543 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-44  150.1   1.3    1.6e-44  149.9   1.3    1.0  1  DUF2543          Protein of unknown function (DUF2543)
  ------ inclusion threshold ------
      0.034   14.0   0.0      0.034   14.0   0.0    1.2  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
      0.039   13.4   0.0      0.042   13.3   0.0    1.1  1  Mannitol_dh_C    Mannitol dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> DUF2543  Protein of unknown function (DUF2543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   1.3   2.8e-48   1.6e-44       1      81 []       1      81 [.       1      81 [. 0.99

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 2.8e-48
     DUF2543  1 mnneiplkyydiadeyatesaePvseeerdalahyfqllitrltnneeiseeaqkemareagideqrideiaeflnqWGne 81
                m  ++plkyydia+eya+e+a+Pvse+e+dalahyfqllitrl+nne ise+aq+ema+eagid  rideia+flnqWGne
  EHU00356.1  1 MTPDVPLKYYDIAEEYAAETATPVSESEHDALAHYFQLLITRLMNNEAISEDAQQEMAAEAGIDAARIDEIATFLNQWGNE 81
                7789****************************************************************************8 PP

>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.7e-06     0.034      21      58 ..      41      78 ..      14      82 .] 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.7e-06
                     HHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS CS
  2Fe-2S_thioredx 21 lvQeeegwlpeealeevaellgvppaevyevatFYsmf 58
                         +++ ++e+a++e+a++ g+ +a++ e+atF +++
       EHU00356.1 41 TRLMNNEAISEDAQQEMAAEAGIDAARIDEIATFLNQW 78
                     444557899*************************8876 PP

>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.9e-06     0.042     108     154 ..       9      55 ..       6      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.9e-06
  Mannitol_dh_C 108 iraivkkllteevapllkkvdeqdleeYadkiieRF.sNpyikdtver 154
                    ++ i++++  e+  p+ +  +++ l++Y +++i R  +N++i+++ ++
     EHU00356.1   9 YYDIAEEYAAETATPVSES-EHDALAHYFQLLITRLmNNEAISEDAQQ 55 
                    788999*************.***************8256788877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 616.22
//
Query:       EHU00357.1  [L=527]
Description: amino acid permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-40  137.0  48.3    1.4e-39  136.2  47.4    1.7  1  AA_permease_2  Amino acid permease
    8.5e-23   80.7  45.6    3.1e-22   78.8  45.5    1.9  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2  47.4   1.5e-43   1.4e-39       1     420 [.      10     493 ..      10     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 136.2 bits;  conditional E-value: 1.5e-43
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    l+l+++ +l igs+igsg + +   + +++g  + + ++++++i+ l+ +lvyaElssalpr gG + y  +  g+ v+f+ + ++++ay  ++ +
     EHU00357.1  10 LGLVDLSLLGIGSMIGSGWLYAAlnSSGYAGSHTGWAWVLGAVIV-LMIGLVYAELSSALPRAGGFVRYPNYSHGNIVGFVIGVSSLLAYTSTAGV 104
                    7899999***********877755677777776555666666666.79********999*********************************9988 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgn....twltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpng 186
                     + ++ +y ++++ p l ++    t l +++ i++l++++l+n+ +++  +++++i++++k+++p++++i l l++  ++             p+g
     EHU00357.1 105 EVEAVRQYAIYWW-PALGHTdgspTGLGFVVQIGLLVVFFLLNYWSVSFFGRVNTIVTTFKFIVPVLTIITLLLYFHAPNLDV------PPAPPGG 193
                    8888999999998.755555444444889999*********************************999998888877666665......456788* PP

  AA_permease_2 187 wpgvllglli..vlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei.....anlsnlgs.vaalffeavggkvv 272
                      gv+++l++  +++++ Gf  a+ +++e+k+  ++vp+ai i++++++v+yl ++ af+g+vp d +     a l+++ + ++a +++ +g +++
     EHU00357.1 194 AHGVFSSLTGagIVFAYLGFRQAVDFASEAKNpqRNVPLAIGIAIAVSFVIYLALQYAFMGAVPADLLsqhgwAGLKQVFQsPYADLARSLGLTWL 289
                    ********87679****************888779*********************************55555333333322599999999999** PP

  AA_permease_2 273 aiivvilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfl........................... 340
                      ++ i +++s +g +n +++g++rvl+a+ar g l ++f  v+ k g p +a++l+++++++++   l                           
     EHU00357.1 290 INLILIDAVISPAGTGNIYLAGAARVLFAWARNGHLFKVFGEVDaKSGVPRGALWLSLLLAIAWT---Lpsefqvwggligavtsatvftympgpi 382
                    *************************************************************6664...2357999999999999999999999998 PP

  AA_permease_2 341 ............................lassaaynfllsvsslgliisyllliigalilr....kkrphlkr.....pgkilvaiigalfllfll 399
                                                +    a ++l  +s ++++ + + ++i a++ +    kk+ ++ +     +  +l+a  ++++++ +l
     EHU00357.1 383 tlgafrrhlpdmqrpfrlpiagllsplaF---VASTLLIYWSGWSVNEILIPILIIAWVAYavfgKKNSEFSQdlrcaW--WLLAYYIVVMVISML 473
                    88888888888888888888888666542...34578888888887777777777777444222244444422355433..788888888888877 PP

  AA_permease_2 400 valffppkgpatqssliytii 420
                     +    + +++t++ +i+ i+
     EHU00357.1 474 GTYG-GSGVISTPFDMILIIV 493
                    7644.4677777777776655 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8  45.5   3.4e-26   3.1e-22       3     456 ..      16     462 ..      14     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 3.4e-26
  AA_permease   3 lvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasil 100
                   +  +g++iG g + +  +  + aG  ++  a++l+ v++++++l  +e++++ p++ggf  y   ++g  +GfviG + l+ +  ++++e+ a+  +
   EHU00357.1  16 SLLGIGSMIGSGWLYAALNSSGYAGSHTG-WAWVLGAVIVLMIGLVYAELSSALPRAGGFVRYPNYSHGNIVGFVIGVSSLLAYTSTAGVEVEAVRQY 112
                  5789********99999999999999555.79************************************************************999999 PP

  AA_permease 101 iqfwelvtdlpkawvt........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivg...iillaggkpnkgagfrflgdngsifknnlp 187
                    +w   ++l  +++          + +lvv++++n+ +v ++g++ +i++ +k+i  + +ii +   ++    + p +                  p
   EHU00357.1 113 AIYW--WPALGHTDGSptglgfvvQIGLLVVFFLLNYWSVSFFGRVNTIVTTFKFIVPVLTIITLllyFHAPNLDVPPAP-----------------P 191
                  9999..8999999999999999886679999********************************99544444444444433.................4 PP

  AA_permease 188 pgfakeeegafknfisvf..vivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.....aspfvi 278
                  +g         ++++s +  + +vfa+ G+   +  a+E+k+P++++P ai  ++   +++Y+ + ++ +  vp +   l ++   +      sp+  
   EHU00357.1 192 GG--------AHGVFSSLtgAGIVFAYLGFRQAVDFASEAKNPQRNVPLAIGIAIAVSFVIYLALQYAFMGAVPADL--LSQHGWAGlkqvfQSPYAD 279
                  44........566666662356799*************************************************999..5555555578899****** PP

  AA_permease 279 fikesgvsvlaplinaviltaalssansslysasRvlyslakdglaP.kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisali 375
                    +++g+  l +li +   ++  +++n +l+ a Rvl++ a++g++   ++++  k+gvP  a+ ls++++ +  l +++     +v+  l+ +++ +
   EHU00357.1 280 LARSLGLTWLINLILIDAVISPAGTGNIYLAGAARVLFAWARNGHLFkVFGEVDAKSGVPRGALWLSLLLAIAWTLPSEF-----QVWGGLIGAVTSA 372
                  ********************************************99934555667***************9999955444.....5678888888888 PP

  AA_permease 376 glivwlliilsylrfRkalkyqgr.........sieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaayliv 456
                  ++++++   +++  fR+ l   +r            ++++ + ll++++ + +  ++i +li a++ay+ ++k  + ++     a+ l +
   EHU00357.1 373 TVFTYMPGPITLGAFRRHLPDMQRpfrlpiaglLSPLAFVASTLLIYWSGWSVNEILIPILIIAWVAYAVFGKKNSEFSQDLRCAWWLLA 462
                  888888888888888877655444110000000333445555555555555555555556666666666666666555554444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4056.67
//
Query:       EHU00358.1  [L=160]
Description: hypothetical protein CKS_2467 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.094   12.6   1.1       0.17   11.8   0.1    2.0  2  DUF1641     Protein of unknown function (DUF1641)
       0.15   12.6   0.0       0.56   10.8   0.0    2.1  2  LepB_GAP_C  LepB GAP domain C-terminal subdomain


Domain annotation for each model (and alignments):
>> DUF1641  Protein of unknown function (DUF1641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.51   4.5e+03      30      37 ..      90      97 ..      86      97 .. 0.63
   2 ?   11.8   0.1   1.9e-05      0.17       9      38 ..     109     139 ..     103     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.51
     DUF1641 30 llalLKal 37
                +++ +Ka+
  EHU00358.1 90 IVNAAKAM 97
                56777776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.9e-05
     DUF1641   9 v.GlfgLlraLrDPDVqrGLGfllalLKalG 38 
                   G+ g++r+L+D++  rG+  +la  +a+G
  EHU00358.1 109 ApGIRGIIRLLKDEELWRGIKPALAGVRAFG 139
                 55*************9888877777666666 PP

>> LepB_GAP_C  LepB GAP domain C-terminal subdomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.68   6.1e+03      27      47 ..      26      46 ..      19      65 .. 0.66
   2 ?   10.8   0.0   6.3e-05      0.56      39      73 ..     115     148 ..      59     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.68
                HHHTTSSS--HHHHHHHTTTH CS
  LepB_GAP_C 27 leEleaaepSlLlvrivkddt 47
                le l++    +L + iv+ +t
  EHU00358.1 26 LESLHQHGFLRLATDIVNANT 46
                666666666677777776553 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.3e-05
                 HHHHHTTTHHHHHHHHHHTS..STTTT--S-HHHH CS
  LepB_GAP_C  39 lvrivkddtlwqrlkealsekksaFeaReDnpeeK 73 
                 ++r++kd++lw+ +k al+    aF +   +p+eK
  EHU00358.1 115 IIRLLKDEELWRGIKPALAG-VRAFGREMKQPSEK 148
                 89*****************9.88999888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1272.50
//
Query:       EHU00359.1  [L=195]
Description: formate dehydrogenase-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-23   82.3   0.0      3e-23   81.9   0.0    1.1  1  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.7e-27     3e-23       1     110 [.      34     139 ..      34     140 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.7e-27
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCT CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNal 93 
                      l L++gr l++++++ +t+   r  + +p  +vei+p+ A+++ +++Gd+V+++srrG++ev++ +terv+   +f+p ++++       +N l
       EHU00359.1  34 LLLNNGRMLEHFQATNQTGAGGRITSLSPhWYVEISPALAQERHLQEGDWVRLTSRRGALEVPVIITERVAGNILFIPIHHGK-----PGVNGL 122
                      689********************************************************************************.....****** PP

                      S--SCSTTT--CSTT-E CS
  Molydop_binding  94 tddatdplsgtpefksv 110
                      t d+ dp  +tp++k++
       EHU00359.1 123 TGDHHDPDVQTPAYKEI 139
                      ***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1488.12
//
Query:       EHU00360.1  [L=701]
Description: formate dehydrogenase-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-78  263.2   0.0    5.2e-78  262.9   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    1.3e-18   66.7   0.4    4.1e-18   65.1   0.4    2.0  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    3.2e-09   36.7   9.4    0.00075   19.6   4.0    2.9  2  Fer4_10          4Fe-4S dicluster domain
    2.1e-08   33.6  22.3    1.9e-05   24.3   3.0    3.6  3  Fer4             4Fe-4S binding domain
    9.2e-08   31.8  17.8    0.00075   19.5   3.4    2.8  2  Fer4_6           4Fe-4S binding domain
    3.6e-07   29.6   0.5    3.6e-07   29.6   0.5    2.2  1  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    4.2e-06   26.8   9.6    4.2e-06   26.8   9.6    2.5  3  Fer4_21          4Fe-4S dicluster domain
    1.6e-05   25.4  14.7    1.6e-05   25.4  14.7    3.5  3  Fer4_7           4Fe-4S dicluster domain
    1.8e-05   25.1   9.1    1.8e-05   25.1   9.1    2.9  3  Fer4_8           4Fe-4S dicluster domain
      4e-05   23.7  13.7      4e-05   23.7  13.7    3.3  3  Fer4_9           4Fe-4S dicluster domain
    0.00041   21.2  13.4       0.27   12.2   8.5    3.2  2  Fer4_16          4Fe-4S double cluster binding domain
     0.0022   18.0   2.4     0.0022   18.0   2.4    3.4  2  Fer4_2           4Fe-4S binding domain
  ------ inclusion threshold ------
      0.012   15.8  11.9      0.091   13.0   0.9    2.8  3  Fer4_18          4Fe-4S dicluster domain
      0.025   15.3   9.5      0.026   15.2   0.7    2.7  2  Fer4_15          4Fe-4S single cluster domain
        1.2    9.7  23.8        1.1    9.9  15.1    3.6  3  Fer4_17          4Fe-4S dicluster domain
        1.2    9.7  14.9        1.6    9.4   2.0    3.0  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.9   0.0   4.6e-81   5.2e-78       1     431 [.     230     656 ..     230     657 .. 0.94

  Alignments for each domain:
  == domain 1  score: 262.9 bits;  conditional E-value: 4.6e-81
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHH CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qti 92 
                    Rl++P++R   + +G+F+++sWdeAl++i ++l+++  + g +++ + +s +  s+e+ ++ +k ++l++g  ++++d+  +++ + a     +t+
     EHU00360.1 230 RLTTPLIR---E-QGRFRPASWDEALAVIVQRLTQIHRQSGGNSIGFIGS-SKASNEEAYLTQKIARLIFG--TNNVDNSSRYCQNPATqglfRTV 318
                    9*******...6.8****************************99996666.5556****************..78999999998776667888888 PP

                    CCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTC CS
  Molybdopterin  93 gsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdk 188
                    g++         +++d+++++lii++GsN++e++p+  ++i +++++ + ++ v++pr +e++++ad++l ikpg d   a am+ ++ + ++ d+
     EHU00360.1 319 GHGGD-----AGTIKDMQQASLIIIVGSNIAENHPVIASHIKQSHKHHGQQLLVVDPRRHEMAERADLYLRIKPGYDMVWASAMARYMFDHGYADE 409
                    77644.....45789********************************************************************************* PP

                    HHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTT CS
  Molybdopterin 189 eflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqli 284
                    +fl+   +  +e++  l   + + +++ ++  ++   + a+ + +++  +  ++ +g++++++g+++  a+ nL+l +gn+g+p +g   ++G ++
     EHU00360.1 410 AFLAEKVNNVAEFRASLAPFTLNYASQLTGLSVQELTNAAEMIGQAKS-ACLLWAMGITQHSHGSDTSTALSNLLLVTGNYGKPSTGGYPMRGHNN 504
                    ***********************8888888888888877777777666.********************************************999 PP

                    HHHCHHHHTCCTTCCCCCCCTT......HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEES CS
  Molybdopterin 285 lagaaekvgalpvllsvkslke......ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldg 374
                    ++g a++ g l+  ++ +++++      +  +++  +p+ l    + + + +++ ++++ +k++y++g++   ++a   +v++a+ +ld+ vv d+
     EHU00360.1 505 VQG-ASDFGCLSNVYPGYESVTdpavrqKWAAAWGVDPEALSAEEGADNYRMIEQAHQGTLKAMYIIGEETAFADAHSTKVHEAFSRLDFMVVQDI 599
                    999.9999999999999999999***888888888899******************************999999999******************* PP

                    CSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 375 rltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLak 431
                    ++++ta++aD++LPa+  +Eke++++n+e+r+q++  + +p g++++dw Il +La 
     EHU00360.1 600 FMSRTAEFADVVLPACPSVEKEGTFVNTERRIQRFYEVLPPLGDSRPDWRILTELAS 656
                    *******************************************************97 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.4   3.7e-21   4.1e-18       1      54 [.     173     226 ..     173     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 3.7e-21
                     SEEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   1 ekvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllervy 54 
                     +k++kt+C+yCgvgC++e++++d  i kv++  d+p+n   +CvKG++++++v+
      EHU00360.1 173 IKKTKTVCTYCGVGCSFEMWTRDRHILKVQPVADAPANGISTCVKGKFGWDFVN 226
                     589*************************************************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   9.9e-07    0.0011       3      24 ..      55      74 ..      53      93 .. 0.73
   2 !   19.6   4.0   6.7e-07   0.00075       6      51 ..     101     187 ..      97     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.9e-07
     Fer4_10  3 vidddtCirCgkCvkaCPadlt 24
                 +d+d+Ci Cg+Cv+aC  ++ 
  EHU00360.1 55 TYDPDQCILCGRCVEAC--QNV 74
                589**************..333 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 6.7e-07
     Fer4_10   6 ddtCirCgkCvkaCPadl........................................tsvgakgeaseeeavrkkvekCtgcg.aC 51 
                  ++C+ Cg Cv++CP ++                                        t+v+ ++ a+++++++k    Ct cg  C
  EHU00360.1 101 GSSCVSCGHCVTVCPCNAllektmqpnagpftnmpetvkrplidvvkklensigagpvTGVSLIDMAMRQSEIKKTKTVCTYCGvGC 187
                 679*************99*****************************************************************9666 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   3.0   1.7e-08   1.9e-05       2      19 ..      55      72 ..      54      74 .. 0.91
   2 !   17.1   6.0   3.2e-06    0.0036       7      23 ..     103     119 ..      99     120 .. 0.93
   3 ?    0.8   0.2      0.43   4.8e+02       6      12 ..     178     184 ..     173     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.7e-08
                EEETTTSSS-THHHHHST CS
        Fer4  2 videekCigCGaCvevCP 19
                ++d++ Ci CG+Cve+C 
  EHU00360.1 55 TYDPDQCILCGRCVEACQ 72
                79***************6 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.2e-06
                 TSSS-THHHHHSTTTEE CS
        Fer4   7 kCigCGaCvevCPvgAI 23 
                  C+ CG Cv vCP +A+
  EHU00360.1 103 SCVSCGHCVTVCPCNAL 119
                 7**************97 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.43
                 TTSSS-T CS
        Fer4   6 ekCigCG 12 
                   C++CG
  EHU00360.1 178 TVCTYCG 184
                 57****9 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.4   6.7e-07   0.00075       3      19 ..      55      71 ..      55      72 .. 0.96
   2 !   17.0   6.6     4e-06    0.0045       7      24 .]     102     119 ..     101     119 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 6.7e-07
      Fer4_6  3 eidpdkCigCgdCvrvC 19
                ++dpd Ci Cg+Cv +C
  EHU00360.1 55 TYDPDQCILCGRCVEAC 71
                68*************** PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4e-06
      Fer4_6   7 dkCigCgdCvrvCPegai 24 
                 ++C++Cg Cv+vCP +a+
  EHU00360.1 102 SSCVSCGHCVTVCPCNAL 119
                 68************9996 PP

>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.5   3.2e-10   3.6e-07       5      35 ..       1      32 [.       1      35 [. 0.92

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.2e-10
  NADH-G_4Fe-4S_3  5 lellLanHpldCltCdkn.GnCeLQdlayelg 35
                     ++  La H l+C++C+ n G+C+L++ + ++ 
       EHU00360.1  1 MDRVLARHELYCTVCEHNtGDCTLHNAVSDMA 32
                     6889**********************998875 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       7.2     8e+03      41      51 ..      12      22 ..       4      29 .. 0.56
   2 !   26.8   9.6   3.7e-09   4.2e-06       4      54 ..      57     117 ..      55     122 .. 0.77
   3 ?   -1.4   0.1       2.4   2.7e+03      36      46 ..     175     185 ..     155     190 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.2
     Fer4_21 41 CvGCnlCssvC 51
                C+ C+  +  C
  EHU00360.1 12 CTVCEHNTGDC 22
                55555444444 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 3.7e-09
     Fer4_21   4 dedkCigCgkCliaCedtsh.qaieidaktvl.........kvvedeCvGCnlCssvCPve 54 
                 d+d+Ci Cg+C+ aC++  + + ++id  + +         ++  ++Cv C  C++vCP +
  EHU00360.1  57 DPDQCILCGRCVEACQNVEVnETLSIDYTADHprvlwdggeRIAGSSCVSCGHCVTVCPCN 117
                 799************986551556666555444456788767889**************74 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.4
     Fer4_21  36 vvedeCvGCnl 46 
                  ++  C+ C +
  EHU00360.1 175 KTKTVCTYCGV 185
                 33444444432 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   7.1   0.00011      0.12      18      48 ..      41      71 ..      11      74 .. 0.63
   2 !   25.4  14.7   1.5e-08   1.6e-05       1      52 []      60     118 ..      60     118 .. 0.83
   3 ?    2.4   0.1      0.21   2.4e+02       4      17 ..     179     192 ..     161     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      Fer4_7 18 eldeeenekgtekveidpekClgCgaCvavC 48
                e +++e++ +++ +++dp++C+ Cg+Cv++C
  EHU00360.1 41 ERKPAEKDHTNPFYTYDPDQCILCGRCVEAC 71
                23344444566889***************** PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.5e-08
      Fer4_7   1 rCigCgaCvaaCp....vkaieldeeenekgt...ekveidpekClgCgaCvavCPtga 52 
                 +Ci Cg+Cv+aC     ++++++d+ ++++++      +i  ++C++Cg+Cv+vCP +a
  EHU00360.1  60 QCILCGRCVEACQnvevNETLSIDYTADHPRVlwdGGERIAGSSCVSCGHCVTVCPCNA 118
                 6***********8777788888988888876555444588889*************987 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.21
      Fer4_7   4 gCgaCvaaCpvkai 17 
                  C +C + C+ +  
  EHU00360.1 179 VCTYCGVGCSFEMW 192
                 48888888875544 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       5.4   6.1e+03      50      61 ..      11      22 ..      10      45 .. 0.70
   2 !   25.1   9.1   1.6e-08   1.8e-05       3      64 ..      59     117 ..      57     118 .. 0.80
   3 ?   -2.1   0.1         5   5.6e+03       8      16 ..     180     188 ..     177     210 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.4
      Fer4_8 50 sCttcgaCtevC 61
                +Ct c++ t  C
  EHU00360.1 11 YCTVCEHNTGDC 22
                466665544444 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 1.6e-08
      Fer4_8   3 ekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 ++Ci Cg+C +aC  ++     + d   ++    + +++  e+ a  sC++cg+C++vCp +
  EHU00360.1  59 DQCILCGRCVEACQNVEVNETLSIDYTADHPR--VLWDG-GERIAGSSCVSCGHCVTVCPCN 117
                 68***********9999988776766666555..45555.357889**************86 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5
      Fer4_8   8 CgaCqsaCp 16 
                 C +C   C 
  EHU00360.1 180 CTYCGVGCS 188
                 777777774 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   7.0   0.00021      0.23      33      48 ..      43      73 ..      10      76 .. 0.53
   2 !   23.7  13.7   3.6e-08     4e-05       1      50 [.      60     118 ..      60     119 .. 0.84
   3 ?    3.3   0.4     0.085        96       5      24 ..     180     199 ..     178     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      Fer4_9 33 e...............eaCigCgaCveaCpk 48
                +               ++Ci Cg+CveaC++
  EHU00360.1 43 KpaekdhtnpfytydpDQCILCGRCVEACQN 73
                234455556666777799***********86 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.6e-08
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase.........eaCigCgaCveaCpkga 50 
                 +C+ Cg+CveaC++  v+e  +  + + + +           ++C++Cg Cv +Cp +a
  EHU00360.1  60 QCILCGRCVEACQNVEVNETLSIDYTADHPRVLwdggeriagSSCVSCGHCVTVCPCNA 118
                 6***********88888777777766665554479999****99************986 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.085
      Fer4_9   5 CgaCveaCpagvvvedaaer 24 
                 C++C   C ++++++d+   
  EHU00360.1 180 CTYCGVGCSFEMWTRDRHIL 199
                 ***********999987655 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2    0.0012       1.4       1      13 [.      60      72 ..      25      87 .. 0.78
   2 !   12.2   8.5   0.00024      0.27       2      28 ..     104     127 ..     103     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
     Fer4_16  1 rCgtCgkCaevCP 13
                +C+ Cg+C+e+C 
  EHU00360.1 60 QCILCGRCVEACQ 72
                4777777777774 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00024
     Fer4_16   2 CgtCgkCaevCPtnaikekkekeiear 28 
                 C++Cg C+ vCP na+ ek   +++++
  EHU00360.1 104 CVSCGHCVTVCPCNALLEK---TMQPN 127
                 *****************99...33333 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.4     2e-06    0.0022       3      20 ..      54      71 ..      52      73 .. 0.91
   2 !   11.6   6.1   0.00021      0.24       9      21 ..     103     115 ..     100     115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2e-06
      Fer4_2  3 vvvdtdrCigCgaCvsaC 20
                + +d+d Ci Cg Cv aC
  EHU00360.1 54 YTYDPDQCILCGRCVEAC 71
                789*************** PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00021
      Fer4_2   9 rCigCgaCvsaCP 21 
                 +C++Cg Cv++CP
  EHU00360.1 103 SCVSCGHCVTVCP 115
                 6***********9 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.1    0.0012       1.3      84      98 ..      60      74 ..      58      86 .. 0.84
   2 ?   13.0   0.9   8.2e-05     0.091      59      82 ..     102     125 ..      93     129 .. 0.83
   3 ?   -2.9   0.1       6.9   7.7e+03      54      74 ..     170     190 ..     162     200 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
     Fer4_18 84 eciscllcidacdkv 98
                +ci c++c++ac++v
  EHU00360.1 60 QCILCGRCVEACQNV 74
                7***********998 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 8.2e-05
     Fer4_18  59 gdcidcescvkvcPtgidirkGlq 82 
                 + c++c++cv+vcP +  + k +q
  EHU00360.1 102 SSCVSCGHCVTVCPCNALLEKTMQ 125
                 68************9887777776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.9
     Fer4_18  54 kekgagdcidcescvkvcPtg 74 
                 +++ +   + c +c   c  +
  EHU00360.1 170 QSEIKKTKTVCTYCGVGCSFE 190
                 444444455666666666555 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   2.4e-05     0.026       3      25 ..      56      78 ..      55      91 .. 0.87
   2 ?    3.5   2.4      0.11   1.2e+02       6      19 ..     102     115 ..      98     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
     Fer4_15  3 vDrdaCigcglCvaeapevfeld 25
                +D d+Ci cg+Cv+++++v +++
  EHU00360.1 56 YDPDQCILCGRCVEACQNVEVNE 78
                79***************998876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
     Fer4_15   6 daCigcglCvaeap 19 
                 + C +cg Cv+++p
  EHU00360.1 102 SSCVSCGHCVTVCP 115
                 68***********8 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.7    0.0019       2.1       2      57 ..      12      72 ..      10      77 .. 0.54
   2 ?    9.9  15.1   0.00097       1.1       1      58 [.      60     116 ..      60     119 .. 0.72
   3 ?    0.6   0.2      0.73   8.2e+02       5      20 ..     180     195 ..     178     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
     Fer4_17  2 CiqCgyClpeCpsyeaydn...epkkllraaklglleeaeke....ekaslCieCgeCerkCP 57
                C+ C++ +  C  ++a ++     + + ++ k++  e+ +++       ++Ci Cg+C+++C 
  EHU00360.1 12 CTVCEHNTGDCTLHNAVSDmaiPIQYYPYERKPA--EKDHTNpfytYDPDQCILCGRCVEACQ 72
                3334443335666555443111222333333333..33333344545789************6 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00097
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraakl..glleeaekeekaslCieCgeCerkCPq 58 
                 +Ci Cg C+++C   e +++    + ++     ++ +e   + + s+C++Cg C+++CP 
  EHU00360.1  60 QCILCGRCVEACQNVEVNETLSIDYTADHPRvlWDGGE---RIAGSSCVSCGHCVTVCPC 116
                 5***************9888444444442222333333...35779*************5 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.73
     Fer4_17   5 CgyClpeCpsyeaydn 20 
                 C yC   C++ +++++
  EHU00360.1 180 CTYCGVGCSFEMWTRD 195
                 9999999999888776 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.0    0.0014       1.6       2      19 ..      57      74 ..      57      80 .. 0.92
   2 ?    4.0   5.8     0.065        73       4      17 ..     102     115 ..      99     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0014
     Fer4_13  2 DrdtCiacgaCvelaPdv 19
                D d+Ci cg Cve++ +v
  EHU00360.1 57 DPDQCILCGRCVEACQNV 74
                789************876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.065
     Fer4_13   4 dtCiacgaCvelaP 17 
                 ++C++cg Cv ++P
  EHU00360.1 102 SSCVSCGHCVTVCP 115
                 68***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 5737.07
//
Query:       EHU00361.1  [L=91]
Description: formate dehydrogenase-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-09   35.6   0.0    8.3e-09   35.4   0.0    1.1  1  Fer2_4    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   4.6e-13   8.3e-09       3      80 ..      17      89 ..      15      91 .] 0.95

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.6e-13
      Fer2_4  3 pvtltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVevegepnvracstpvedGlkvetq 80
                + t+ ++G+++++++G  +++ l  +g ++p+ c++      l++   C  C+Ve  g+  vr c+ +  + ++v++ 
  EHU00361.1 17 TCTIVYNGERLSGQAGLPLIDFLELHGKKLPHVCYH----PALKPLETCDVCWVEHAGKL-VRGCTLETVHDMVVSSV 89
                67999*******************************....99*************99987.**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 696.44
//
Query:       EHU00362.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00362.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00362.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00362.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00362.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00362.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHU00362.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00362.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00362.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHU00362.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00362.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00362.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHU00362.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00362.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00362.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00362.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHU00362.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00362.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2715.01
//
Query:       EHU00363.1  [L=365]
Description: glutathione-independent formaldehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-27   94.3   0.6    9.4e-27   93.1   0.6    1.6  1  ADH_N        Alcohol dehydrogenase GroES-like domain
    1.8e-10   40.9   3.2    6.2e-10   39.2   3.2    1.9  1  ADH_zinc_N   Zinc-binding dehydrogenase
    0.00021   20.9   0.3     0.0035   16.9   0.1    2.1  2  Glu_dehyd_C  Glucose dehydrogenase C-terminus
    0.00087   18.6   3.4    0.00098   18.5   2.6    1.5  1  AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.066   13.2   0.2       0.12   12.3   0.2    1.5  1  ADH_N_assoc  Alcohol dehydrogenase GroES-associated
      0.084   13.1   0.4       0.15   12.3   0.4    1.4  1  TrkA_N       TrkA-N domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.6   3.1e-30   9.4e-27       2     102 ..      15     123 ..      14     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 3.1e-30
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-.........TTBEETTTS. CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC.........eeakllgvs. 90 
                 ++vl++++++ iCgsDlh+++g  +++ +++ ilGHE  G+v+e+g++v+++kvGd V++++++ cg C++C++g + +C         + +++     
  EHU00363.1  15 TDVLVRITTTNICGSDLHMYEG--RTSFEQGRILGHENLGQVVEIGSGVERVKVGDYVCLPFNVGCGFCENCEKGLTGFClttnpgtagAAYGF---Ae 108
                 79*******************9..69******************************************************99777743333333...36 PP

                 ...S-SSSBSEEEEC CS
       ADH_N  91 ...ldGgfaeyvvvp 102
                    ++Gg+ae + vp
  EHU00363.1 109 mgpWSGGQAELLRVP 123
                 66********99998 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   3.2   2.1e-13   6.2e-10       2      69 ..     176     243 ..     176     326 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.1e-13
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSH CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsg 69 
                 vGl+a   A + Ga ev++vd  +++l+la+klGa ++  +   d v +i +lt+g+g d   ecvG++
  EHU00363.1 176 VGLMAAHSAIIKGAsEVYVVDTHADRLALAEKLGAIAINATGA-DAVNKILDLTDGRGTDCGCECVGYQ 243
                 8*********************************988777755.***********************43 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.2e-06    0.0035      32     111 ..     166     243 ..     155     256 .. 0.75
   2 ?    1.9   0.0     0.046   1.4e+02     161     203 ..     310     352 ..     305     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-06
  Glu_dehyd_C  32 esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsr.etpvdeipeas..eemdlvvEaTGsa 111
                  es+ + GaG +GL+a+       +g ++vyv++++     ++ l e+lGa  ++    + v++i + +  +  d  +E+ G+ 
   EHU00363.1 166 ESVAIYGAGQVGLMAAHSAII--KGASEVYVVDTHAD---RLALAEKLGAIAINATgADAVNKILDLTdgRGTDCGCECVGYQ 243
                  7999***********665554..79999*****8654...6779******999865245677776654114677888888775 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
  Glu_dehyd_C 161 NanrrhfeaavdtLaalpeslldelvtkvvdldeleeAfeddd 203
                   an+++++  +++L a ++    ++++++++l+e++e +++ d
   EHU00363.1 310 QANVKAYNRQLARLIAQDKAKPGQIISHRLQLTEAAEGYKHFD 352
                  58999*******************************9998544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.6   3.3e-07   0.00098      21      78 ..     157     221 ..     151     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.3e-07
                  CEETCB---E.EEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCECEE.....H CS
  AlaDh_PNT_C  21 Ggvpgvepak.vlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakfvev.....l 78 
                  + + g +p++ v + G+G +Gl A++ a   ga +V+v+D+ ++rl   e+lga  +++     +
   EHU00363.1 157 TELAGLKPGEsVAIYGAGQVGLMAAHSAIIKGAsEVYVVDTHADRLALAEKLGAIAINAtgadaV 221
                  556677777538999****************9857******************998877444440 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     4e-05      0.12      12      23 .]       1      12 [.       1      12 [. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
  ADH_N_assoc 12 VrVeeVPDPkIe 23
                 ++V++VPD+kIe
   EHU00363.1  1 MSVKDVPDAKIE 12
                 79*********8 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   5.1e-05      0.15       1      51 [.     168     219 ..     168     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatd 51 
                 ++i G+G+vG   a+     g ++v+v+d+  +r++ +++ g+ ++++ ++d
  EHU00363.1 168 VAIYGAGQVGLMAAHSAIIkGASEVYVVDTHADRLALAEKLGAIAINATGAD 219
                 6899*********99877646678*************999998777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2739.48
//
Query:       EHU00364.1  [L=73]
Description: hypothetical protein CKS_2461 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 560.00
//
Query:       EHU00365.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00365.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00365.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00365.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00365.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 891.32
//
Query:       EHU00366.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHU00366.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1025.04
//
Query:       EHU00367.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00367.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00367.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00367.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00367.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00367.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00367.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00367.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00367.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00367.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00367.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00367.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00367.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00367.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00367.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00367.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU00367.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00367.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00367.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00367.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU00367.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00367.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00367.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00367.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00367.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00367.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00367.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00367.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00367.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00367.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00367.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU00367.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU00367.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU00367.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00367.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00367.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00367.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 3678.09
//
Query:       EHU00368.1  [L=414]
Description: diguanylate cyclase/phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-63  213.6   0.0    5.6e-63  212.6   0.0    1.4  1  EAL       EAL domain
    0.00018   21.7   0.0     0.0022   18.2   0.0    2.5  1  PAS_4     PAS fold
  ------ inclusion threshold ------
      0.028   14.4   0.0      0.091   12.8   0.0    1.9  1  PAS       PAS fold


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.0   9.4e-67   5.6e-63       6     238 .]      16     243 ..      13     243 .. 0.96

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 9.4e-67
                 HHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CCHHH CS
         EAL   6 ealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladeefle 104
                 + l+++e+ +y+QP+v+l++ +vvg+e+l+r   pdg +i+p++f+p  er+gll el+  +l q +  +  +     ++  ls+n+sp++l+  ++++
  EHU00368.1  16 KRLQAGEFTPYFQPIVSLEDERVVGFEMLARRVLPDGLIIPPDQFIPEMERQGLLNELTAVLLTQGILTAGTWP----EQQFLSVNVSPSQLKGCHLPD 110
                 67899********************************************************************5....55557**************** PP

                 HHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCC CS
         EAL 105 elrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialake 203
                  ++++++q+ +s  rL +eite++l+++ ++++ + ++ L+++G+ ia+ddfgtg+ssl+ l  lp ++iK+d+s+++ + ++++++++v++++ l ++
  EHU00368.1 111 IIKHVANQYAFSLPRLKIEITETALIDDVDSAR-AQIDYLSEMGCMIAMDDFGTGFSSLAWLIQLPATTIKIDSSFIRSMLHQKDSRKIVSSVVGLGRS 208
                 ******666666666*****************9.***************************************************************** PP

                 CT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 204 lgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 l+++v+aegVetee++e+lr++gc+++QGyl++kp
  EHU00368.1 209 LDMDVIAEGVETEEEAEMLRKIGCTYAQGYLFGKP 243
                 **********************************9 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.7e-07    0.0022       8      47 ..     288     327 ..     285     385 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.7e-07
       PAS_4   8 lavldpdgrvlyaNaaaaelfgappeellGktlaellpee 47 
                 +++l++d+r+++a++++ae + ++ ++l+++  +e+ p e
  EHU00368.1 288 ICFLNTDLRIVDASETFAERVCWELDDLIDRYIYEVIPSE 327
                 899***********************************86 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.5e-05     0.091      11      70 ..     285     339 ..     275     381 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
                 SSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT CS
         PAS  11 pdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqge 70 
                  + i+ ++ d ri+ ++++++e   ++ ++++ + ++++i+ e     a++l++l   +e
  EHU00368.1 285 GTSICFLNTDLRIVDASETFAERVCWELDDLIDRYIYEVIPSE-----ADKLLWLQDFRE 339
                 5679************************************985.....566655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3097.11
//
Query:       EHU00369.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-20   72.2   0.0    1.1e-19   70.9   0.0    1.5  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   6.2e-24   1.1e-19      31     209 ..     104     320 ..      89     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 6.2e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHU00369.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegglrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999888877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHU00369.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHU00369.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3027.24
//
Query:       EHU00370.1  [L=518]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-47  161.7  35.4    3.4e-47  160.4  17.8    3.8  3  MCPsignal     Methyl-accepting chemotaxis protein (MCP) signa
     0.0011   18.6   0.5     0.0011   18.6   0.5    3.8  5  4HB_MCP_1     Four helix bundle sensory module for signal tra
  ------ inclusion threshold ------
      0.015   15.4   1.3      0.015   15.4   1.3    3.5  5  COG2          COG (conserved oligomeric Golgi) complex compon
      0.033   14.8   0.1      0.033   14.8   0.1    3.2  3  OAD_gamma     Oxaloacetate decarboxylase, gamma chain
       0.21   12.0   6.0       0.32   11.4   0.6    3.9  4  HAMP          HAMP domain
       0.27   11.7   5.9       0.11   13.0   2.8    2.0  2  Fez1          Fez1
       0.34   10.7   7.1      0.099   12.5   2.0    2.5  2  LapA_dom      Lipopolysaccharide assembly protein A domain
       0.47   10.9   4.2       0.32   11.4   1.9    2.0  2  DUF4200       Domain of unknown function (DUF4200)
          2    9.0   7.6        1.7    9.2   3.1    2.9  3  APG6_N        Apg6 coiled-coil region
        7.8    6.7  11.5        3.5    7.8   7.1    2.5  2  FIT1_2        Facilitor Of iron transport 1 and 2


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.032        57     127     170 ..      46      87 ..      27     139 .. 0.82
   2 !    6.4   6.4    0.0039         7      97     167 ..     266     333 ..     247     337 .. 0.48
   3 !  160.4  17.8   1.9e-50   3.4e-47       2     172 .]     329     485 ..     327     485 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.032
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 127 gealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                  ++l++i ++va+ ++l+  +aa+s++  asi++++  ++++++
  EHU00370.1  46 LRTLQTIKDNVAQQTTLL--LAASSDDRHASIQDIAAKFAALQQ 87 
                 467888888888877776..788888888888888888777655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0039
                 .............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  97 eiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqavee 167
                 +++ +i+ s +s++ +  +++ g ++ ++ +   ++ ++a +e a++++e+++++++ +as+++++++  e
  EHU00370.1 266 DLVSQIKASSASVSLAADEISRGNTELSSRT---EQQAAALQETAASMEELTTTVKNNAASAQKTAESARE 333
                 2334444444444444444444443322211...1233444555555555555555555555555555443 PP

  == domain 3  score: 160.4 bits;  conditional E-value: 1.9e-50
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 ++a+e+   A++g++ v+++ ++m++i+ s+ ++ dii+Vi++ia+QTN+LALNAa+EAARAGe GrGFaVVA+EVr+LA+rsa aa++i++li     
  EHU00370.1 329 ESARETALLARKGETDVQKMSDTMHTISASALKVRDIIAVIESIAFQTNILALNAAVEAARAGEDGRGFAVVAGEVRTLAQRSATAARDIKQLI----- 422
                 6788888899************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          e+++++ve+g+  ++ tge++ +iv +v+++a+ ++ei+ as+eq ++i++v+ av++++ vt
  EHU00370.1 423 ---------EQAVTQVESGVGVAQGTGESILKIVGMVGSLASAMDEISLASTEQMQGISQVSIAVSQMDGVT 485
                 .........9***********************************************************986 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5     6e-07    0.0011       8     104 ..       7     102 ..       1     107 [. 0.94
   2 ?   -1.1   0.0      0.68   1.2e+03     137     171 ..     132     167 ..     108     174 .. 0.74
   3 ?   -3.3   0.5       3.2   5.7e+03      11      36 ..     193     219 ..     187     222 .. 0.72
   4 ?   -1.0   2.5       0.6   1.1e+03     142     176 ..     300     327 ..     259     338 .. 0.53
   5 ?   -1.1   0.1      0.66   1.2e+03      28      70 ..     343     385 ..     333     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6e-07
   4HB_MCP_1   8 LillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieeleaeidkllekyektilt 104
                 L  +fl++++l +++ ++  ++l+++ ++ +++   rl  +++l+ ik+n++++ ++ll     + +a  ++++++   l+++ d+ +++++ +i  
  EHU00370.1   7 LNAAFLTVIMLGVCITLFAGIKLSTVRDQ-QKLTVARLNDLRTLQTIKDNVAQQTTLLLAASSDDRHASIQDIAAKFAALQQNSDDTTAHFRTLING 102
                 7889**********************998.788999*******************************************************999875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.68
   4HB_MCP_1 137 kdeAyqlyetegrparekliea.leelvdlnlkvAe 171
                 k  A ++++++g+  re +++a l +l+++ + v++
  EHU00370.1 132 KASATRVLQQDGNAVREHIDNAlLTDLANYRSAVSD 167
                 557888888888888888876525777777777665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.2
   4HB_MCP_1  11 lflllallliivG.vvGlyslkkinkn 36 
                 + ++l ++ i++G v++++ +++i+k+
  EHU00370.1 193 SLSVLTVVFIALGfVMSWLITRRIKKQ 219
                 556677777778877888888888876 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.6
   4HB_MCP_1 142 qlyetegrparekliealeelvdlnlkvAeeaykd 176
                 +        a +++ +++eel ++ +++A  a+k 
  EHU00370.1 300 A-------AALQETAASMEELTTTVKNNAASAQKT 327
                 2.......222223333333333333333322222 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.66
   4HB_MCP_1  28 yslkkinknletmYedrllpikdlgeikanlrelradllelil 70 
                 + ++k+++ + t+    l+  ++++ i++ + + +++ l+  +
  EHU00370.1 343 TDVQKMSDTMHTISASALKVRDIIAVIESIAFQTNILALNAAV 385
                 5678899999999999998888888888888888887777665 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.3   4.2e+03      94     114 ..      47      67 ..      28      85 .. 0.62
   2 ?   -2.3   0.0       2.5   4.5e+03      91     125 ..     138     174 ..     133     176 .. 0.61
   3 ?   15.4   1.3   8.4e-06     0.015      58     120 ..     251     314 ..     247     328 .. 0.83
   4 ?   -2.1   0.0       2.1   3.7e+03      84     110 ..     347     373 ..     333     414 .. 0.58
   5 ?   -1.2   0.1       1.1     2e+03      76     112 ..     451     487 ..     441     511 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.3
        COG2  94 ereeeveskleeakeleekre 114
                 ++ +++++++++++ l  +  
  EHU00370.1  47 RTLQTIKDNVAQQTTLLLAAS 67 
                 567788888888777766554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.5
        COG2  91 klsereeeveskleea..keleekrellklllkldev 125
                  l++  ++v++ +++a  ++l++ r  + +++ ++++
  EHU00370.1 138 VLQQDGNAVREHIDNAllTDLANYRSAVSDMVAYQDR 174
                 5666666777777665335666666777777777665 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 8.4e-06
        COG2  58 vslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeake.leekrellklll 120
                 +sl ++L g+q++l+ + s+++a    v+ + +++s+  +e++s+ e++++ l+e+ ++++ l 
  EHU00370.1 251 FSLMASLAGMQDNLRDLVSQIKASSASVSLAADEISRGNTELSSRTEQQAAaLQETAASMEELT 314
                 578899***************************************9987651455556665554 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.1
        COG2  84 kvesvreklsereeeveskleeakele 110
                 k++++++ +s+   +v++ ++  ++++
  EHU00370.1 347 KMSDTMHTISASALKVRDIIAVIESIA 373
                 344444444444444444443333333 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.1
        COG2  76 splaaarkkvesvreklsereeeveskleeakeleek 112
                  +la+a+++++ +  +  + +++v+  +++   ++++
  EHU00370.1 451 GSLASAMDEISLASTEQMQGISQVSIAVSQMDGVTQN 487
                 5666677777766666666666666666655554444 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.7   4.9e+03      15      31 ..      11      27 ..       9      38 .. 0.78
   2 ?   14.8   0.1   1.9e-05     0.033       9      58 ..     185     236 ..     180     264 .. 0.84
   3 ?   -0.0   0.6      0.78   1.4e+03      41      58 ..     319     344 ..     292     370 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.7
   OAD_gamma 15 FvvLilLslvislfski 31
                F+  i+L ++i+lf  i
  EHU00370.1 11 FLTVIMLGVCITLFAGI 27
                67778888999998766 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.9e-05
   OAD_gamma   9 lGmgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa..e 58 
                 +G++ VF+ L +L++v+ ++++++++   +  kk+  a++a+a+a aaa  +
  EHU00370.1 185 TGLAGVFLSLSVLTVVFIALGFVMSWLITRRIKKQLGAEPAQAQALAAAiaA 236
                 79999**********************9999999999999999887766541 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.78
   OAD_gamma  41 kkakaaaaaaaaaaaaa........e 58 
                 ++a++a++ a++a ++a        +
  EHU00370.1 319 NNAASAQKTAESARETAllarkgetD 344
                 22222222222222222444444442 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   0.00018      0.32      15      53 .]     229     266 ..     225     266 .. 0.89
   2 ?    0.4   0.1      0.47   8.5e+02      13      27 ..     278     294 ..     268     317 .. 0.80
   3 ?   -2.4   0.0       3.7   6.7e+03      11      28 ..     346     363 ..     344     368 .. 0.80
   4 ?   -3.1   0.0       5.9   1.1e+04      12      20 ..     452     460 ..     450     461 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
                 HHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHHHH CS
        HAMP  15 raarriaaGdldtrlpv.sgrDEiGeLarafNaMldrLre 53 
                 + a++iaaGdl+t+  v  +rD    L +++  M+d+Lr+
  EHU00370.1 229 ALAAAIAAGDLSTP--VkLRRDDAFSLMASLAGMQDNLRD 266
                 56899*********..7669*****************986 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.47
                 HHHHHHHHTTT..BTSS CS
        HAMP  13 LaraarriaaG..dldt 27 
                 ++ aa++i++G  +l++
  EHU00370.1 278 VSLAADEISRGntELSS 294
                 67899999999444444 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHTTTBTSST CS
        HAMP  11 rrLaraarriaaGdldtr 28 
                 +++++++  i+a  l++r
  EHU00370.1 346 QKMSDTMHTISASALKVR 363
                 789999999998777766 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5.9
                 HHHHHHHHH CS
        HAMP  12 rLaraarri 20 
                  La+a+++i
  EHU00370.1 452 SLASAMDEI 460
                 678888887 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.7     3e+03     135     149 ..      73      87 ..      30     169 .. 0.57
   2 ?   13.0   2.8     6e-05      0.11      26     134 ..     243     349 ..     238     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
        Fez1 135 reverlraeLkeerq 149
                 ++++ + a+ +  +q
  EHU00370.1  73 ASIQDIAAKFAALQQ 87 
                 222222222222222 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6e-05
        Fez1  26 vtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelq.rkkseaellrekvekleeelkelreelselsleeeeaa.....lesd 118
                 v  + ++ ++l a+l  ++ +l++  ++ik  ++s++  ++e+ + + el+ r++++a  l+e++ ++ee ++ ++++++++++++e+a+     +   
  EHU00370.1 243 VKLRRDDAFSLMASLAGMQDNLRDLVSQIKASSASVSLAADEISRGNTELSsRTEQQAAALQETAASMEELTTTVKNNAASAQKTAESARetallA--- 338
                 5567788899999999999***************************99996366888999999999999999999998877665544444233331... PP

        Fez1 119 eakaqrqeaeeleelk 134
                   ++    ++++++++
  EHU00370.1 339 --RK---GETDVQKMS 349
                 ..22...222222222 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3      0.42   7.5e+02      26      51 ..      14      42 ..       1      49 [. 0.50
   2 ?   12.5   2.0   5.5e-05     0.099      17      51 ..     192     222 ..     186     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.42
    LapA_dom 26 afgiGallgwllsl.wsyl..rlrrelrr 51
                ++ +G+ +++++++ +s +  ++++ + r
  EHU00370.1 14 VIMLGVCITLFAGIkLSTVrdQQKLTVAR 42
                33444444444444323333345555555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.5e-05
    LapA_dom  17 lpLsllllvafgiGallgwllslwsylrlrrelrr 51 
                 l+Ls+l +v++++G+++ wl++     r +++l +
  EHU00370.1 192 LSLSVLTVVFIALGFVMSWLITR----RIKKQLGA 222
                 89******************987....66666655 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.4   1.2e+04      77      94 ..      70      87 ..      49      96 .. 0.58
   2 ?   11.4   1.9   0.00018      0.32      18     103 ..     281     366 ..     268     372 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.4
     DUF4200 77 ekeaeikklkaeietlks 94
                ++ a i+++ a+ ++l++
  EHU00370.1 70 DRHASIQDIAAKFAALQQ 87
                444445555555554444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
     DUF4200  18 kkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekl 103
                 + +ei r + +l++r e+  ++ qe   ++++++  +k n a  ++  + a e + l ++ e +++k+ + + t+ +   k  +++
  EHU00370.1 281 AADEISRGNTELSSRTEQQAAALQETAASMEELTTTVKNNAASAQKTAESARETALLARKGETDVQKMSDTMHTISASALKVRDII 366
                 5689999999***************************************************************9998877776665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.3   2.3e+03      71     102 ..      62      93 ..      31     104 .. 0.63
   2 ?   -0.7   0.0       1.1   1.9e+03      23      55 ..     112     142 ..     108     167 .. 0.68
   3 ?    9.2   3.1   0.00094       1.7      15     108 ..     261     351 ..     252     365 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
      APG6_N  71 kelekereeleaelaaleeelealeeeeerfw 102
                   l +  ++  a +++++++ +al+++ +   
  EHU00370.1  62 LLLAASSDDRHASIQDIAAKFAALQQNSDDTT 93 
                 34444555556666677777777776666554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
      APG6_N  23 kerdaYeeflkklkkekkeeekqdeeleeleee 55 
                 +e d+ ++flkk++++++  +   + ++ l+++
  EHU00370.1 112 SEVDEASDFLKKIETSSPPFK--ASATRVLQQD 142
                 68899999****999977765..3444444443 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00094
      APG6_N  15 dkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynel 108
                 +  l+++ ++++a ++  +   +e +     ++el +  e+ ++  +e ++ +eeL  + k++++ +++ a+ ++e++ l ++ e  +++ ++ 
  EHU00370.1 261 QDNLRDLVSQIKASSASVSLAADEISR---GNTELSSRTEQQAAALQETAASMEELTTTVKNNAASAQKTAESARETALLARKGETDVQKMSDT 351
                 444444444444444444444444333...56889999999999**************************************999999998875 PP

>> FIT1_2  Facilitor Of iron transport 1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.1     0.002       3.5      20      63 ..     296     343 ..     289     359 .. 0.86
   2 ?   -0.6   0.1      0.82   1.5e+03      19      41 ..     484     506 ..     481     515 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
      FIT1_2  20 tdsaapvlsestt....rtvtvanstaayakvvteaPettssssttkt 63 
                 t++ a++l+e+ +     t+tv+n++a++ k+   a et+  + + +t
  EHU00370.1 296 TEQQAAALQETAAsmeeLTTTVKNNAASAQKTAESARETALLARKGET 343
                 899999999999999888***************999999988887776 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.82
      FIT1_2  19 vtdsaapvlsesttrtvtvanst 41 
                 vt++ a+ ++es t     ++++
  EHU00370.1 484 VTQNNAALVEESSTASHGLSDQA 506
                 89999999999998777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2255  (0.125774); expected 358.6 (0.02)
Passed bias filter:                      910  (0.0507558); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 3416.65
//
Query:       EHU00371.1  [L=191]
Description: ATP/GTP-binding transmembrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.18   11.5   0.0    1.2  1  FMN_bind_2  Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     1e-05      0.18      34      88 ..      81     135 ..      62     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1e-05
                 EEEEEEEE-EE...-TTSSEEEEEEETTSGGGGGT.TTS-EEEEEEEEEE..EE-CC CS
  FMN_bind_2  34 glqashiPflldeeekgkgkLrgHlaraNpqakaleeeeevlvvfqgpda..YvsPs 88 
                 ++ ++ iP+ ++   ++   Lr+H  + N+ +++l++e+ v ++f + ++   v++ 
  EHU00371.1  81 RPLSTLIPLAVQV--SQPVILRFHADKPNKLVADLLAEKAVPLTFISWEHknLVTAA 135
                 78999******44..44447***************9999999998776655666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1382.91
//
Query:       EHU00372.1  [L=615]
Description: PTS system beta-glucoside-specific IIBCA components [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-43  148.1   0.0    1.7e-43  147.4   0.0    1.4  1  PTS_EIIA_1    phosphoenolpyruvate-dependent sugar phosphotran
    1.9e-34  119.2  31.1    3.2e-34  118.4  31.1    1.4  1  PTS_EIIC      Phosphotransferase system, EIIC
      3e-13   49.0   0.0    6.1e-13   48.0   0.0    1.6  1  PTS_EIIB      phosphotransferase system, EIIB
  ------ inclusion threshold ------
        1.8    8.4   3.8          5    7.0   3.8    1.8  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2


Domain annotation for each model (and alignments):
>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.0   3.9e-47   1.7e-43       2     126 ..     464     588 ..     463     589 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 3.9e-47
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 ++++pvsGe++pl+ + D+vfa++++G+G+ai p+ gk+ +p+dG+ve++f+t+Ha+g+k+d+g+e+lihiGidtvkl g++F+++++ g+ +++gd+l
  EHU00372.1 464 RLFAPVSGEITPLSALADPVFADEIFGKGLAIYPTGGKLRSPIDGRVESLFETHHALGLKSDTGAEILIHIGIDTVKLGGRHFTSHIQPGQFIRTGDLL 562
                 589************************************************************************************************ PP

                 EEE-HHHHGGGSS---EEEEESSGGG CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnsee 126
                 +++dl+a++++g++  ++v+vtn e+
  EHU00372.1 563 ITFDLNALEAEGIDRSVIVIVTNCER 588
                 **********************9875 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4  31.1   7.2e-38   3.2e-34       2     324 .]     105     384 ..     104     384 .. 0.88

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 7.2e-38
    PTS_EIIC   2 dgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvll 100
                  +f+++ip++  +Gil g+  l+            + ++ ++ ++il +++++vf++Lpl +a+++a+++  g+++++++a + +l ++ l    + l+
  EHU00372.1 105 GIFSPIIPAIAGAGILKGILALMV--------AFHWLETQNQSYQILLAISDGVFYFLPLALAFSAAKRF--GANPYVAVALAASLFHPAL----QTLF 189
                 68*******************333........2467888999****************************..****************999....5555 PP

    PTS_EIIC 101 laagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsg 199
                 +a ++     + +lg+++ ++++  ++i++ll+ +l++++e+ i + +P +l   + + ++ +i t v+l+++g+++ + ++a++gg+++    l ++ 
  EHU00372.1 190 TAGEP-----IRFLGLPVRTVNYASTVIPVLLSIWLLSYVERLIDRVIPAALKTMFVPLLSLLIVTPVTLIAIGPLGIFAGNALTGGIIW----LVENM 279
                 55555.....9*****************************************************************************99....45555 PP

    PTS_EIIC 200 sllgvlifgflerllipfGlHhafiapfwftsa....ggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaalt 294
                 +++++ ++g+  +l+i++G+H +++++++ ++     +++ +                       + + + g++ a++ +++ +++ k++k+l  ++  
  EHU00372.1 280 GIIAGVVVGGTLSLIIITGMHYVLVPVMIHNIShlgfDPFKIL----------------------FYVTNLGQAGAAFGVFL-RARDKKLKSLALTTSF 355
                 5*****************************9985443333333......................66666666666666444.5568888888888888 PP

    PTS_EIIC 295 pflfGItepleFgfpfvlnlllfipallag 324
                 ++ +GItep+++g++++++++ f +all+g
  EHU00372.1 356 SAAMGITEPAMYGINIRYKRP-FAAALLGG 384
                 9********************.99999887 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.4e-16   6.1e-13       1      34 []       8      41 ..       8      41 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.4e-16
                HHHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  1 keIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                ++I+ ++GGkdN+ s+ hC+TRLR+ l+D+sk+d
  EHU00372.1  8 QQIIPLIGGKDNVQSLFHCITRLRFLLRDNSKAD 41
                69******************************98 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.8    0.0011         5       7      26 ..     280     301 ..     278     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
  Adeno_E3_CR2   7 aIivaVvvG..laiIiicmlyY 26 
                   +Ii++VvvG  l++Iii+ + Y
    EHU00372.1 280 GIIAGVVVGgtLSLIIITGMHY 301
                   8*******98899****98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4387.75
//
Query:       EHU00373.1  [L=490]
Description: beta-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-130  435.6   3.5   1.5e-129  432.3   3.5    1.9  1  Glyco_hydro_1  Glycosyl hydrolase family 1
    0.00012   21.6   0.0    0.00029   20.4   0.0    1.6  2  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.3   3.5  1.7e-133  1.5e-129       4     452 ..       6     485 ..       3     486 .. 0.92

  Alignments for each domain:
  == domain 1  score: 432.3 bits;  conditional E-value: 1.7e-133
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHH.......................HHHHHGGGSTTS--.-SSTT-HHHHHHHHHHHHHHTT-SEE CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwD.......................tftetpgkvlegsn.gdvacdsYhrykeDvallkelgvkay 75 
                    +fpedFlwg+ataa+q+EGaw+ +Gkg+s++D                       + +e ++   +++  +  +  +Y ++keD+al++ +g++++
     EHU00373.1   6 SFPEDFLWGGATAANQLEGAWHVGGKGLSVSDvytfdastpqdqwldqwlsmthaQVAEAQNPESKKYYpKRKGNGFYTHFKEDIALFAGMGFRCF 101
                    7*********************************999999999999987766332222222222222224677899******************** PP

                    EEE--HHHHSTTS.TT---HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHH CS
  Glyco_hydro_1  76 rfSisWpRilPkG.egeinekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvv 169
                    r+Si+W+Ri+P+G e+e+ne+Gl++Y+ ++d+ll++giep+v l H+++P aL   +Ggw nr+++d + ++a++vf r+++kvk+w+TfnE+n+v
     EHU00373.1 102 RMSIAWTRIFPRGdEAEPNEAGLQFYDAVLDALLAHGIEPIVSLSHYEMPLALVTdYGGWPNRQLVDFYVRFATTVFMRYRKKVKYWMTFNEINCV 197
                    ****************************************************9766**************************************** PP

                    HHHHHTS.S-STT-S-TT.THHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHH CS
  Glyco_hydro_1 170 allgylt.gefaPgkkdl.eaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemk 263
                     +++y++ g+   g+  + +  y+ aH++++a+a a k+++ +++ +++g +++++  +p + +++d++a+e++++++  +f d++ +G Yp+++ 
     EHU00373.1 198 KHHPYVSiGVIEEGHPHIeQDKYQGAHHQFVASALATKACHAIIPGAQVGCMISYQILYPHTCHPDDVQACEEMQRVS-LFFSDVQARGYYPAYAE 292
                    *****86377888865541679**************************************************999988.7**************** PP

                    HHHGGG..S----HHHHHHH.TT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEE CS
  Glyco_hydro_1 264 ellrergalpeiteedkell.kgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyi 358
                    ++l e+g ++    +d e+l ++++df++++yY+s++v++++  e+ + ++ +  +    +p+l+++++gw+i+p+glr  l+ l+++Yq +p++i
     EHU00373.1 293 RMLAEKGVQLIKAVGDDEILrQHPVDFVSFSYYMSSTVSAHP--EKLTGAQGNLITGGIRNPHLETSEWGWQIDPKGLRLALNQLYDRYQ-KPLFI 385
                    ******9998888899999967789****************9..66677777888889999*****************************.9**** PP

                    EE----EE-BSSS.HHH--HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHH CS
  Glyco_hydro_1 359 teNGlgakdeiee.gkveDdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykevi 448
                    +eNGlga d+++  g+++Dd+RidYl +h++++k+ai dgv l gY+ w+ +D++++ ++ +skr+G++yvd+    n t++Rt kkS++wyk++i
     EHU00373.1 386 AENGLGAVDTVKPdGSIDDDYRIDYLSQHVAQMKEAIADGVPLFGYTWWGPIDVVSAGTAqMSKRYGFIYVDQddmgNGTQKRTLKKSYHWYKKLI 481
                    **********9877******************************************98888***********9999999***************** PP

                    H-SS CS
  Glyco_hydro_1 449 ekng 452
                    ++ng
     EHU00373.1 482 ASNG 485
                    *997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.3e-08   0.00029      23     137 ..      86     200 ..      62     264 .. 0.77
   2 ?   -2.7   0.0      0.35   3.2e+03     237     262 ..     381     418 ..     364     435 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.3e-08
                 HHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..........TTTCSSSSTTTTHHHHHHHHHHHHHH CS
   Cellulase  23 tkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse..........egwltkadgnssedtaeeffkklwtq 111
                  k+ i++++ +gf ++R+ ++w ++++ +++ + +e+ l+ +++v+++  ++g+  i+ + ++          +gw         + +  +f+  + t 
  EHU00373.1  86 FKEDIALFAGMGFRCFRMSIAWTRIFPRGDEAEPNEAGLQFYDAVLDALLAHGIEPIVSLSHYemplalvtdyGGW--------PNRQLVDFYVRFATT 176
                 57789999****************************************************9997755444444333........445567788887778 PP

                 HHHHHTTTTTTEEEESSSS--STTCT CS
   Cellulase 112 iAerykkndevvifelmNEPhgnntg 137
                 +  ry k+  v  + ++NE +++++ 
  EHU00373.1 177 VFMRYRKK--VKYWMTFNEINCVKHH 200
                 88888444..4445578888887665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.35
                 SEEEEEEEESSTTSSH.....HHHHHHHHH.......H CS
   Cellulase 237 ipviigEfGgsnadgd.....lakeeaekw.......l 262
                 +p++i E G++  d       ++++++  +       +
  EHU00373.1 381 KPLFIAENGLGAVDTVkpdgsIDDDYRIDYlsqhvaqM 418
                 58899999988666655455555555544444443334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3646.86
//
Query:       EHU00374.1  [L=316]
Description: esterase/lipase/thioesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-56  192.0   0.0    1.8e-56  191.3   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
    1.8e-08   33.7   0.1    3.9e-08   32.6   0.1    1.4  1  COesterase     Carboxylesterase family
    0.00031   20.4   0.0     0.0043   16.6   0.0    2.1  2  DLH            Dienelactone hydrolase family
    0.00049   19.6   0.2      0.014   14.9   0.1    2.4  2  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.01   14.7   0.0      0.015   14.1   0.0    1.1  1  Say1_Mug180    Steryl acetyl hydrolase
      0.045   13.2   0.0      0.093   12.2   0.0    1.4  1  Esterase_phd   Esterase PHB depolymerase


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3   0.0     6e-60   1.8e-56       1     210 [.      83     292 ..      83     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 6e-60
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    ++++HGGG ++gs++++ +l +  a++ ++vvvsvdYrl+Pe+ fP  +ed++++l+w++++a+ lg+dp+ri ++GdSaG+ laa +al  rd++
     EHU00374.1  83 ILHLHGGGHLFGSPEQSLSLTSATARRHNCVVVSVDYRLSPETVFPGSLEDSYQVLNWMVNEAAMLGIDPARIGVMGDSAGAGLAASLALFTRDRN 178
                    689************************************************************9******************************** PP

                    ---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHS.S..GGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHH CS
  Abhydrolase_3  97 epkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlyl.p..eadrddplaspllaedlsglpptlvvvaefDplrdegeayaer 189
                    +p++a+q l+ P++d  rt +e++   + ++ + ++tr+  ++ w++ l +  + ++ +p+a+p +a+dl+glpp+++ v++ D++ de+ +ya+r
     EHU00374.1 179 GPTLAFQNLMFPMLDD-RTVTETH--PNPVTGEFVWTREYNRIGWSALLgEapGGEAVSPYAAPARATDLRGLPPAWIGVGTLDLFLDENLDYAQR 271
                    **************99.7767777..456788899**************6256788889********9**************************** PP

                    HHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 190 lraagvevelieyegmvHgfa 210
                    l  ag +vel++++g++Hgf+
     EHU00374.1 272 LIRAGAAVELHVWPGAFHGFH 292
                    ********************8 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   1.3e-11   3.9e-08     108     206 ..      83     174 ..      67     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.3e-11
                 EEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHH CS
  COesterase 108 lVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGesAGaasvsllll 204
                 +  +hGgg  +gs ++     sa a++ n++vV++ YRl +       +  +pG   l D  + L+W  ++ a  G dp r+ ++G+sAGa +++ l l
  EHU00374.1  83 ILHLHGGGHLFGSPEQslSLTSATARRHNCVVVSVDYRLSP-------ETVFPG--SLEDSYQVLNWMVNEAAMLGIDPARIGVMGDSAGAGLAASLAL 172
                 5679**********88867788888999**********987.......457888..69*********************************99998877 PP

                 SG CS
  COesterase 205 sp 206
                  +
  EHU00374.1 173 FT 174
                 65 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.073   2.2e+02      86     116 ..     142     171 ..     125     190 .. 0.82
   2 !   16.6   0.0   1.4e-06    0.0043     146     201 ..     250     303 ..     235     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.073
         DLH  86 vaylksvpevstkkvgvvGfCmGGalallla 116
                 v+ ++  +  ++ ++gv+G   G+ la  la
  EHU00374.1 142 VNEAAMLG-IDPARIGVMGDSAGAGLAASLA 171
                 66667777.899***************9988 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.4e-06
         DLH 146 pilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresyneea 201
                 p  + +g+ D f + +   + ++ l+ a++++el+v+pga H+F+  + +  + +a
  EHU00374.1 250 PAWIGVGTLDLFLDENL--DYAQRLIRAGAAVELHVWPGAFHGFHGSETAAVSLQA 303
                 77888999999999994..8999999******************998887544444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9   5.8e+03     173     195 ..      78     100 ..      73     107 .. 0.74
   2 !   14.9   0.1   4.6e-06     0.014      46     201 ..     132     305 ..     129     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
                   S-SEEEEEETTS-SSTTSSHHHH CS
  Peptidase_S9 173 gknvlllifpdegHgvgkprakv 195
                   gk + +l  ++ gH +g+p+++ 
    EHU00374.1  78 GKRMGILHLHGGGHLFGSPEQSL 100
                   66666777788999999988765 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.6e-06
                   HHHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHHH-GGG-S.EEEEESE---CCCHHCSTTS..........THHHCCCC--TTT..CHH CS
  Peptidase_S9  46 dDfiaaaealakeg...yvdserlaitGgSyGGyltgaalnqrpdlFk.aavaevpvvdvlrydsdtdl..........lteeymewgnpee..nee 126
                   +D  +++ ++++e     +d+ r++++G S+G  l++ ++    d+ +  ++ ++ ++ +l + + t+           +t+ey   g +    +  
    EHU00374.1 132 EDSYQVLNWMVNEAamlGIDPARIGVMGDSAGAGLAASLALFTRDRNGpTLAFQNLMFPMLDDRTVTEThpnpvtgefvWTREYNRIGWSALlgEAP 228
                   6777777777777643458*************77777666655555441455566666666666665555567777778888888777665566666 PP

                   HHHHHHHH-CGGG--...---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HHHHHH CS
  Peptidase_S9 127 gykelspyspldnvk...aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv.eelarl 201
                   g +++spy+  ++ +     pp  + +G++D      e l ++++L ++g  v+l++ p++ Hg+  +++ +   +ar+
    EHU00374.1 229 GGEAVSPYAAPARATdlrGLPPAWIGVGTLDLFL--DENLDYAQRLIRAGAAVELHVWPGAFHGFHGSETAAvSLQARE 305
                   778899998888777888899999******9655..9**************************9987777665666666 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.2e-06     0.015     125     218 ..      83     176 ..      76     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.2e-06
  Say1_Mug180 125 llylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvkskgf.....knvvvlGdSaGGnlvLslllkls 217
                  +l+lHGGg  ++    +l+  s + + ++   ++ +DY +       + +p  + +s +v +++v+  ++       + v+GdSaG  l  sl l  +
   EHU00374.1  83 ILHLHGGGHLFGSPEQSLSLTSATARRHNC-VVVSVDYRLSP----ETVFPGSLEDSYQVLNWMVNEAAMlgidpARIGVMGDSAGAGLAASLALFTR 175
                  79****************998888888764.57889**9987....667888888888888887764433111336899*******999888877665 PP

  Say1_Mug180 218 k 218
                  +
   EHU00374.1 176 D 176
                  5 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.1e-05     0.093      92     121 ..     148     177 ..     130     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
  Esterase_phd  92 hrvdaarvyvaGlsaGaaladllalhypdv 121
                    ++d+ar+ v G saGa+la  lal   d+
    EHU00374.1 148 LGIDPARIGVMGDSAGAGLAASLALFTRDR 177
                   589********************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2256.19
//
Query:       EHU00375.1  [L=203]
Description: hypothetical protein CKS_2445 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-05   24.1   0.0    7.2e-05   23.3   0.0    1.4  1  ASCH      ASCH domain
     0.0011   19.4   0.1     0.0022   18.4   0.1    1.6  1  DUF4440   Domain of unknown function (DUF4440)


Domain annotation for each model (and alignments):
>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     8e-09   7.2e-05       2      90 ..       5      89 ..       4     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8e-09
                EE-TTHHHHHHTTS--EEEESSTTTGGGT-CEEEEEECCCCTSEEEEEEEEEEEEEEHHHHHHHHHCHCC---HCHHHHHHHCCHHHHH CS
        ASCH  2 sfhqelaslivsGkKtaeirvwdeelpkvrgdllilaalkptgralgivevtkvevkpfeevteehalkegesleewrevheefyeees 90
                ++ ++l +++ +G+K+++ir w+e++ +  g l  +   +++     iv+v++v  +p++ v +  +++e +  +e+++ ++e+y++  
  EHU00375.1  5 HIVPRLMTAVRAGNKRHTIR-WQEQAIT-PGPLRYI--NHEDPADSVIVTVERVVMMPLSSVAQHLGKDEEWPDAELLAGMQEHYPAIQ 89
                56778999************.9999888.4******..5555555678999999999*****999999888899999999999999865 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.4e-07    0.0022      13      85 ..     128     197 ..     109     203 .] 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-07
                 HCT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECCTT CS
     DUF4440  13 vagdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtgrytfegrgdg 85 
                 ++ da+ la+ l+p++ ++++sg + ++++ ++al+a++ a+  +  + + +++    A++ +r   ++r+dg
  EHU00375.1 128 KRYDAAWLAQRLHPEFQEITRSGVRVNRAQTIAALQAEAHAPAIVSRDFQLIQTETHHALLLYR---TARPDG 197
                 57799999****************************9977777777777888888999999999...445566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1564.44
//
Query:       EHU00376.1  [L=62]
Description: hypothetical protein CKS_2443 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 584.73
//
Query:       EHU00377.1  [L=506]
Description: aldehyde dehydrogenase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-163  542.9   0.1   5.8e-163  542.7   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.7   0.1  3.2e-167  5.8e-163       7     461 ..      34     493 ..      27     494 .. 0.96

  Alignments for each domain:
  == domain 1  score: 542.7 bits;  conditional E-value: 3.2e-167
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaela 104
                 + + +++P++g+  +++p+++++dvd+avaaA++a +aw k+++++Ra +L k+ad lee+ e +a  et+++Gkp++e+ a +++ a+d++ry+a+ +
  EHU00377.1  34 NYFTNTSPVNGSAAGEFPRSDKADVDKAVAAAAAAADAWGKTSPQQRALVLLKIADRLEENLEYMAVNETWDNGKPVRETLAaDMPLAVDHFRYFAGCV 132
                 55999********************************************************************************************** PP

                 HHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 105 eklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealveh 203
                 +  eg++++++e + a+ ++ePlGvv++I+PWNfPll+aawklapal aGN+vvlKPae+tpls++l++el+++  lP+gv+nvv+g+g+e+geal++h
  EHU00377.1 133 RAQEGSAAEIDEFTAAYHFHEPLGVVAQIIPWNFPLLMAAWKLAPALGAGNCVVLKPAEQTPLSITLFVELIQD-LLPPGVVNVVHGYGKEAGEALASH 230
                 **********99**************************************************************.9*********************** PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS...H...HHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda...D...ldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                 p+++kv+ftGst++g +i++ aak+l + t+ElGGk+p+i +ed    +   ++ka+e++v   f+n+G+vC+++sr+lvqesiy+ f++++++++k++
  EHU00377.1 231 PGIAKVAFTGSTATGGHILELAAKSLIPSTVELGGKSPNIFFEDImqaEesfIEKAAEGVVL-GFLNQGEVCTCPSRALVQESIYEPFMAAVLKRIKTI 328
                 ******************************************99643223445677777666.589********************************* PP

                 -BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT..E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 297 kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge..reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 + gdpld +t vG+++s++q++k+ +y+e a++ega++l+Gg   + ++ l++gy+++Pt+l++ +++mr++qeEiFGPV+ +++fkde+eai+iaNd+
  EHU00377.1 329 RRGDPLDTETMVGAQASQQQFDKILSYLEIARQEGAEILTGGGveKLDDALASGYYIQPTLLKG-NNSMRVFQEEIFGPVVGITTFKDEAEAIAIANDS 426
                 ****************************************99888778999************8.********************************** PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                  yGL+agv+t+d++ra rv ++++aG v+ N+++ + a+a +fgG+k+Sg+Gre+ k +l++y ++k+
  EHU00377.1 427 IYGLGAGVWTRDINRAYRVGRAIKAGRVWTNCYHLYPAHA-AFGGYKKSGIGRETHKMMLDHYQQTKN 493
                 *********************************9999999.*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.33
# Mc/sec: 4584.45
//
Query:       EHU00378.1  [L=187]
Description: methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-06   27.9   0.0    5.2e-06   27.1   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    4.5e-06   27.3   0.0    6.6e-06   26.8   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    1.8e-05   23.9   0.0    2.1e-05   23.7   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
    8.6e-05   22.1   0.0    0.00011   21.8   0.0    1.1  1  MTS              Methyltransferase small domain
    0.00026   21.6   0.0    0.00044   20.8   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
     0.0014   18.4   0.0     0.0019   18.0   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.038   13.6   0.0    1.2  1  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
      0.056   13.0   0.0      0.081   12.4   0.0    1.3  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
       0.11   12.5   0.0       0.14   12.1   0.0    1.2  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.6e-09   5.2e-06       1      97 []      52     143 ..      52     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.6e-09
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhhlsdedlekalkeiarv 92 
                      + +lG+G G lt++l++++ ++a++  ++is+++ ++ ++  +    ++++++++ae l+   gs+D+++s g  l  ls+e +e++l+ ++ +
       EHU00378.1  52 IAELGAGDGVLTRRLLAKMaPEATLDVFEISSALAQKLNALDD---ERMTVRTCSAEYLN---GSYDAIFS-GLpLLSLSQELREAILQAVFHA 138
                      679***********99999679*********999998888773...37999999999886...9*******.67799999999*********** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      L p+G
       EHU00378.1 139 LGPNG 143
                      ***99 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.3e-09   6.6e-06       2      99 .]      54     145 ..      53     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.3e-09
  Methyltransf_12   2 eiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas.nvlhhlkdir.evldnirkl 92 
                      e+G+G+G l+r+ll+k  p++++ + +is++      +kl++ ++   +++++++++++ l g  s+D++++   +l+  +++r ++l+ + ++
       EHU00378.1  54 ELGAGDGVLTRRLLAKMaPEATLDVFEISSALA----QKLNALDD---ERMTVRTCSAEYLNG--SYDAIFSGlPLLSLSQELReAILQAVFHA 138
                      89***************9999999*****9999....77777775...667777777766655..******996777777888868888999** PP

  Methyltransf_12  93 LkpgGrl 99 
                      L p+G++
       EHU00378.1 139 LGPNGVF 145
                      *****86 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.1e-08   2.1e-05      11      81 ..      18     100 ..       9     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.1e-08
                 -EE--HHHHHHHHHHH-GG...........TTSEEEEES-TTTCCHHHH.HCC-..SEEEEE-S-HHHHHHHHCHTTTCCCEEEE CS
      RrnaAD  11 nflknkkvineIldklnle...........ekltvleigpGkGilTeeL.akra..kqvvvlElderLakllqkklskdeklkvv 81 
                 +f++n+  + +I   ++              +  + e+g+G G+lT++L ak+a    + v+E+ ++La+ l++   +de+++v 
  EHU00378.1  18 QFIRNPRKMGSITPSSEALcrtmveavdwrHQFRIAELGAGDGVLTRRLlAKMApeATLDVFEISSALAQKLNA--LDDERMTVR 100
                 5555555555555555555555555555559*****************9899998888889*************..789999985 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.4e-08   0.00011      22     139 ..      39     149 ..      26     172 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.4e-08
                 HHHHHCHCCTCSEEEEET-TTSHHHHH.HHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHH CS
         MTS  22 lLletlpkelsgkvlDlGcGaGvlgaa.lakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavae 119
                  ++e+++ +++ +++ lG+G Gvl+   lak+ pea++++++++  Al+   + l +++    ++ + + +e  ++++d+i s  P+ + ++   ++ e
  EHU00378.1  39 TMVEAVDWRHQFRIAELGAGDGVLTRRlLAKMAPEATLDVFEISS-ALAQKLNALDDER----MTVRTCSAEYLNGSYDAIFSGLPLLSLSQ---ELRE 129
                 3445555558889************86268999*********985.6665555555555....455556666667999*****999988777...7888 PP

                 HHHHHHHHHEEEEEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeLliVa 139
                 +++++  +aL ++G ++   
  EHU00378.1 130 AILQAVFHALGPNGVFVQFQ 149
                 88888888899999876555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.2e-07   0.00044       2      95 ..      54     146 ..      53     147 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.2e-07
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpgGl 93 
                      ++G+G G l++ l  + a   ++D+ +   +la++ +  ++++++++ ++ae   + ++s+D+++s   l  +  e +e++l+ +   L p+G+
       EHU00378.1  54 ELGAGDGVLTRRLLAKMAPEATLDVFEISSALAQKLNALDDERMTVRTCSAE---YLNGSYDAIFSGLPLLSLsqELREAILQAVFHALGPNGV 144
                      79************99999999999999999999999999988899999999...6789*********9999998899999************9 PP

                      EE CS
  Methyltransf_11  94 lv 95 
                      +v
       EHU00378.1 145 FV 146
                      97 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   9.7e-07    0.0019       6     109 ..      51     147 ..      47     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.7e-07
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..naladpdkileei 97 
                      r+ +lG+G G lt +l  ++ p+a+   +D  e +  lA++ +  l  ++++++ +++e l+      ++D i+s  +l    +   ++il+ +
       EHU00378.1  51 RIAELGAGDGVLTRRLLAKMAPEAT---LDVFEISSALAQK-LNALDDERMTVRTCSAEYLN-----GSYDAIFSGLPLlsLSQELREAILQAV 135
                      7889******************999...5555544455555.34466679**********99.....89*******9999999999******** PP

  Methyltransf_31  98 ervlkpggilli 109
                      + +l p+g+++ 
       EHU00378.1 136 FHALGPNGVFVQ 147
                      *********985 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.9e-05     0.038       9      65 ..      40      88 ..      35     114 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
  Methyltransf_28  9 ewqalgrpskklrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrer 65
                     + +a++    ++r+ ElG+G+G L   +L  ++ +       +++ + E+S++l+++
       EHU00378.1 40 MVEAVDWRH-QFRIAELGAGDGVLTRRLLAKMAPE-------ATLDVFEISSALAQK 88
                     555665444.5******************999866.......456777888777766 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.1e-05     0.081      51     158 ..      44     146 ..      27     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.1e-05
  Methyltransf_PK  51 pgkrevkvaldcGaGiGrvtknlLlkll..skvDlvepvekflekakeelaeekkkvgkvyvvglqeftPeegrYdliWiqWcvghLtDedlva 142
                      ++ r++ ++++ GaG G +t++lL k++  + +D+ e  + + +k++  l +e+  v+ +    l      +g+Yd i+    +  L+ e   a
       EHU00378.1  44 VDWRHQFRIAELGAGDGVLTRRLLAKMApeATLDVFEISSALAQKLN-ALDDERMTVRTCSAEYL------NGSYDAIFSGLPLLSLSQELREA 130
                      5677788999*****************96678999999888888887.56665544444333322......57777777777777777777777 PP

  Methyltransf_PK 143 flkrckkalkpnGliv 158
                       l+ + +al pnG++v
       EHU00378.1 131 ILQAVFHALGPNGVFV 146
                      7777777777777776 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.2e-05      0.14      12      75 ..      36      97 ..      24     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.2e-05
  Methyltransf_32 12 lvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklg 75
                     l++++++   + +++++++++GaG g L+++l   ++  +  +  ++++++l++k ++++++  
       EHU00378.1 36 LCRTMVEA-VDWRHQFRIAELGAGDGVLTRRLLA-KMAPEATLDVFEISSALAQKLNALDDERM 97
                     56666666.578889******************9.33346666668889999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1339.12
//
Query:       EHU00379.1  [L=240]
Description: glutamine amidotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-17   63.9   0.0    2.1e-17   63.6   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    1.3e-08   34.8   0.0    2.5e-08   34.0   0.0    1.4  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
      0.096   12.3   0.0       0.13   11.9   0.0    1.1  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.4e-21   2.1e-17      44     178 ..      61     198 ..      44     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.4e-21
                 SEEEEEEESSCTT.....TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT.......CGGTTTTSEEEEEEEEEE CS
      GATase  44 dgilvsgGpgspg.....vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet.......allyglknevierhrHry 130
                  g ++sg    ++      e + + ++ ++++++P+LG+C+G+Ql+a+++g+kv  +     hg++  l + +t        ll  l++ ++++ +Hr 
  EHU00379.1  61 SGAVLSGSWAMVTdheewSERTAAWVRAVMDAQLPLLGVCYGHQLMAYALGGKVADNP----HGWERGLLALNTttaakhdPLLATLPDHFEAWLSHRQ 155
                 5666666666666665667788888999999************************665....23332222222223355559***************** PP

                 EEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTT CS
      GATase 131 evnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpe 178
                  v      p + +++a+se+d     ++  +n + ++QFHPE+  + +
  EHU00379.1 156 SVVI---PPPQSTILAQSEKD-PCQVLRYSPN-ALSMQFHPEFDRQIM 198
                 9997...89999******998.4555555555.9********987665 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   4.1e-12   2.5e-08      94     216 .]      82     192 ..      73     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 4.1e-12
  Peptidase_C26  94 elaLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveA 189
                    + a +ra++++++P+lg+C G+ql++ alGG+++ + +        +e    a + +   +++ lla l    ++e    H+q++    ++  + A
     EHU00379.1  82 TAAWVRAVMDAQLPLLGVCYGHQLMAYALGGKVADNPHG-------WERGLLALNTTTAAKHDPLLATLPD--HFEAWLSHRQSVVIPPPQSTILA 168
                    567899*************************99887774.......3334466677778889999999988..8999999**************** PP

  Peptidase_C26 190 vaeDgviEaieseeakafvlgvQwHPE 216
                    ++e +    ++       +l++Q+HPE
     EHU00379.1 169 QSEKDPCQVLRYSP---NALSMQFHPE 192
                    ***99988888777...57*******9 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.1e-05      0.13      16     118 ..      33     135 ..      32     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
    GATase_3  16 ldpLeaepevrvrfvplkdeslg..edadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLd 112
                 +d+L+ +pe ++++ p  +e l+  +++   +l G+   + d +   e +++ ++++ + a+ p+lg+C G q++   +  +   ++  g   gl  L+
  EHU00379.1  33 IDALNLQPEDYLIVRPHLGEPLPqfTEISGAVLSGSWAMVTDHEEWSE-RTAAWVRAVMDAQLPLLGVCYGHQLMAYALGGKVA-DNPHGWERGLLALN 129
                 6889999999999999999999988679999*****999999886666.7999********************98877765443.34555666777777 PP

    GATase_3 113 ietefe 118
                 ++t+ +
  EHU00379.1 130 TTTAAK 135
                 777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1948.81
//
Query:       EHU00380.1  [L=294]
Description: hypothetical protein CKS_2439 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-38  129.5  41.9    1.6e-19   70.5  16.2    2.0  2  EamA            EamA-like transporter family
      1e-05   24.8   6.9      0.022   13.9   0.5    2.5  2  Mg_trans_NIPA   Magnesium transporter NIPA
    1.8e-05   23.8   2.3    1.8e-05   23.8   2.3    2.3  2  CRT-like        CRT-like, chloroquine-resistance transporter-
    0.00023   20.8  15.7    0.00072   19.2  15.5    1.9  1  SLC35F          Solute carrier family 35
  ------ inclusion threshold ------
       0.27   11.9  14.3       0.11   13.2   3.5    3.1  2  Multi_Drug_Res  Small Multidrug Resistance protein
       0.88    8.7  11.1       0.17   11.0   0.7    2.2  2  Nuc_sug_transp  Nucleotide-sugar transporter


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5  16.2   5.2e-23   1.6e-19       5     136 ..       7     130 ..       4     131 .. 0.96
   2 !   65.3  17.7   2.1e-21   6.3e-18       5     135 ..     138     275 ..     134     277 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 5.2e-23
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 +++l ++ +wa++ v+ k++l +++pl+lt +rf++ +i+l++++ ++++++         +llll++  +++ f+l+f ++++t+a++ ++++ l   
  EHU00380.1   7 FTVLMVVSIWAFNNVAVKWGLVDLPPLFLTWMRFFVVAIVLVPFCRINRQQF--------PWLLLLAFTFGFMHFSLLFLGMRYTDAGTGAIVVQLGTP 97 
                 568889999**************************************99999........8999999999***************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 ++++l++++l+ekl l+ql+gi+++l Gv++++
  EHU00380.1  98 IAMLLAMVFLKEKLRLIQLIGIMISLSGVVVLS 130
                 ******************************986 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 2.1e-21
        EamA   5 llallaalfwaiyfvlskillrkvspl...tltfvrfliagillliiallkegkl....aklslkdwllllllgllgtvlafllffyalkktsasnasl 96 
                 +++l+  l++a+++ +s  +++k +p+   t+t++  ++a  ++ + + ++e+ +    +   +++w+++l+ ++ ++v+a+ l++++lkk ++  +++
  EHU00380.1 138 WWVLCILLCSATGWAVSNLIVKKSPPIkplTMTGWIAFLALPIVGAASYMSESHQlyalQHAGWRGWFAILYSAIASSVVAYTLWYSLLKKYNVNLIMP 236
                 566666666666666666666666555444999999999999999999999988889999999999********************************* PP

        EamA  97 itslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 +++l+Pv+++i+++++lg +l++++++g+ l++lG+ + 
  EHU00380.1 237 YSLLTPVLAVIMGIVVLGDSLNSFKIIGASLVILGTTIA 275
                 ***********************************9876 PP

>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   7.4e-06     0.022      88     119 ..      98     129 ..      85     152 .. 0.87
   2 !   13.7   1.2   8.1e-06     0.024      75     122 ..     231     278 ..     192     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-06
  Mg_trans_NIPA  88 vsavlasllLkekLkllgllGcllailGstvl 119
                    ++ +la ++LkekL+l++l+G+++++ G +vl
     EHU00380.1  98 IAMLLAMVFLKEKLRLIQLIGIMISLSGVVVL 129
                    56789***********************8886 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.1e-06
  Mg_trans_NIPA  75 atLvtPLGalsvivsavlasllLkekLkllgllGcllailGstvlvih 122
                    + L+ P   l+ +++ ++  ++L + L+ + ++G  l ilG+t+ vi 
     EHU00380.1 231 VNLIMPYSLLTPVLAVIMGIVVLGDSLNSFKIIGASLVILGTTIAVIN 278
                    679999999999********************************9985 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   2.3   6.2e-09   1.8e-05      84     139 ..      75     130 ..      35     157 .. 0.90
   2 ?    1.0   1.2     0.053   1.6e+02     107     140 ..     244     277 ..     231     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.2e-09
    CRT-like  84 lvvigavstsGslqvllnqaiipitllasllllkerysliqylGAlviilgvvvvl 139
                 l ++g  +t   +  ++ q+ +pi +l+++++lke+  liq++G ++ + gvvv+ 
  EHU00380.1  75 LLFLGMRYTDAGTGAIVVQLGTPIAMLLAMVFLKEKLRLIQLIGIMISLSGVVVLS 130
                 5677888888888999*************************************865 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.053
    CRT-like 107 itllasllllkerysliqylGAlviilgvvvvli 140
                 + +++ +++l +  + ++++GA ++ilg  +++i
  EHU00380.1 244 LAVIMGIVVLGDSLNSFKIIGASLVILGTTIAVI 277
                 5688999999****************99998876 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2  15.5   2.4e-07   0.00072      91     296 ..      77     274 ..      31     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.4e-07
      SLC35F  91 vkayqytsltsvqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvlagrransgsnpvlGdllvlaGatlyavsnvl..eeylvkk 187
                     +yt   +  ++   ++p+ ++l+++flk + rl+++ig+++ + Gvv+l +s  +       +        ++l  at +avsn +      +k 
  EHU00380.1  77 FLGMRYTDAGTGAIVVQLGTPIAMLLAMVFLKEKLRLIQLIGIMISLSGVVVLSGSPTIP------A---WWVLCILLCSATGWAVSNLIvkKSPPIKP 166
                 5566777777777777889********************************988777666......2...233468899*********64112234555 PP

      SLC35F 188 lslvellgllglfGaiisaiqlailerkelkaih...Wdaeiallfvgfalvlfllysl.lpilikktsatsvnlslltsdlyslliglflfhykvswl 282
                 l ++  +++l+l    i +    + e ++l+a++   W    a+l+ + a ++ + y+l  ++l k +   ++  sllt  + ++++g+ + ++ ++ +
  EHU00380.1 167 LTMTGWIAFLAL---PIVGAASYMSESHQLYALQhagWRGWFAILYSAIASSVVA-YTLwYSLLKKYNVNLIMPYSLLTP-VLAVIMGIVVLGDSLNSF 260
                 555555555555...3556667888999999987555777778888777666655.555156666778889999****97.56999************* PP

      SLC35F 283 yllafvviliGlil 296
                  ++   ++++G  +
  EHU00380.1 261 KIIGASLVILGTTI 274
                 ***99999999765 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.5   3.6e-05      0.11      25      92 ..      53     121 ..      35     122 .. 0.80
   2 ?    2.8   3.1     0.062   1.9e+02      57      93 .]     235     268 ..     180     268 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                     ---------HHHH..HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH CS
  Multi_Drug_Res  25 gftkltpsllviv..gygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglal 92 
                       ++ +p ll+++  +  + f+lL + ++ +++++  a+   +Gt + +l+++++++e+l l +lig+++
      EHU00380.1  53 INRQQFPWLLLLAftFGFMHFSLLFLGMRYTDAGTG-AIVVQLGTPIAMLLAMVFLKEKLRLIQLIGIMI 121
                     5555555555555335567899999*********97.999***************************985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.062
                     -HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  57 vAYavwsGiGtvlivlvgillfgeslslkkliglali 93 
                     + Y +++    vl v++gi+++g+sl+  k+ig  l+
      EHU00380.1 235 MPYSLLT---PVLAVIMGIVVLGDSLNSFKIIGASLV 268
                     4555555...4789999**************998775 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   5.8e-05      0.17      98     153 ..      74     129 ..      62     134 .. 0.94
   2 ?    2.0   4.0     0.033        98     238     311 ..     199     272 ..     165     276 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.8e-05
  Nuc_sug_transp  98 nllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalv 153
                      ll++++   da+t  +  ql      l+++++Lk kl   q + +++ + Gv+++
      EHU00380.1  74 SLLFLGMRYTDAGTGAIVVQLGTPIAMLLAMVFLKEKLRLIQLIGIMISLSGVVVL 129
                     689**************************************************986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.033
  Nuc_sug_transp 238 GffkGydlvvwvvvllqavG.GlvvavvvkyaDnilkgfatslaiilstvasvllldlkitllFllGallviaav 311
                       ++G+  +++ +++   v   l  ++  ky  n++  ++  l+ +l++++ +++l+ +++   ++Ga+lvi+ +
      EHU00380.1 199 AGWRGWFAILYSAIASSVVAyTLWYSLLKKYNVNLIMPYSL-LTPVLAVIMGIVVLGDSLNSFKIIGASLVILGT 272
                     34567766666666665554257778888999999999875.788999********99999999********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2124.09
//
Query:       EHU00381.1  [L=453]
Description: family III CoA-transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-47  163.0   0.8    2.9e-45  155.0   0.0    2.7  2  CoA_transf_3  CoA-transferase family III
  ------ inclusion threshold ------
      0.054   13.5   0.0        0.1   12.5   0.0    1.4  1  Rnf-Nqr       Rnf-Nqr subunit, membrane protein


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.7     0.001       9.2     232     323 ..      96     168 ..      66     189 .. 0.64
   2 !  155.0   0.0   3.2e-49   2.9e-45       1     224 [.     199     412 ..     199     422 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.001
  CoA_transf_3 232 gvyrtkdgwvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaelaewlaertaaewlellaaagvpaapvntleevlddpq 323
                   g y++++gw+ + ++ +++  a+  +lg++   ++                 ++la+ +a+ +a+e+++++ +ag +aa+++++e   ++pq
    EHU00381.1  96 GDYACRNGWIRLHTNAPHHRLAMESVLGQHP--DR-----------------DALAREVAQWQATELEQAVIDAGGCAAEMRSAEAWRQHPQ 168
                   5566666666666666666666666666542..22.................3444445555555555555555555555555555555554 PP

  == domain 2  score: 155.0 bits;  conditional E-value: 3.2e-49
  CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegrellkrLvakADVvieNfrpgv 97 
                   L G+rVldl++++aGp+at++LA lGA V +++pp        +      +e ++ + ++ +Kr  +lDlk++++r+ +  L+++ADV+++ +r+ +
    EHU00381.1 199 LLGIRVLDLTRIIAGPVATRFLASLGANVLRIDPP-------GW------QEPGADEELACGKRRAVLDLKQPADRAQFIWLLKQADVLVHGYRADA 282
                   669********************************.......45......4566778999************************************* PP

  CoA_transf_3  98 lerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsl.t.gepdgpPvkvgvplgDivtgllaavailaallarertGkGqvi 192
                   le+lg+++e+l++  P L+ + ++++G +Gp+++r+g+D ++q+ +G++   +  ++++ Pv   v+  D++tg+l a+a+la l++r  +G G++ 
    EHU00381.1 283 LEKLGFDAESLQSLCPGLVDVGLNAWGWQGPWRNRRGFDSLVQMGCGIAEQgMrWKQHNAPVPLPVQALDHATGYLIAAAVLAGLRQRLHEGSGSQT 379
                   *************************************************99433457788************************************* PP

  CoA_transf_3 193 dvslleaalallapqlley.latgevperqgnr 224
                   ++sl+ +a  l +  ++     +g +p++++n+
    EHU00381.1 380 RLSLARTAWLLEQHRYASDmAHSGIIPQHSDNQ 412
                   ********9999999988845555555544444 PP

>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05       0.1     110     155 ..     332     377 ..     320     399 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
                 HHHHT--------THHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSS CS
     Rnf-Nqr 110 graeafasknsvleslldglgsglGftlalvllaairellgkGtli 155
                  + +   ++n +++  +++l  + G+++a  +la++r++l +G+  
  EHU00381.1 332 EQGMRWKQHNAPVPLPVQALDHATGYLIAAAVLAGLRQRLHEGSGS 377
                 5555555667899999*************************88764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3265.28
//
Query:       EHU00382.1  [L=189]
Description: putative redox enzyme maturation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-11   42.9   0.4    4.5e-11   42.9   0.4    1.6  2  Nitrate_red_del  Nitrate reductase delta subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.4   2.5e-15   4.5e-11       4     135 ..      36     147 ..      33     149 .. 0.85
   2 ?   -2.0   0.1      0.19   3.4e+03      18      36 ..     162     178 ..     153     185 .. 0.52

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 2.5e-15
  Nitrate_red_del   4 lsaeveealaelaealaaededllelaaeYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefyrqaglevaeefneppDHlaveLefl 97 
                      l+a++  + ++l + l +++ d ++l a+Y +LF+g     +sP++s + +       g++  e+r+f+++ g+   e      DH++++L + 
       EHU00382.1  36 LAAQWPLEQDALLKRL-QQSSDPQALTADYEALFVG-ESCNVSPFASHWPE-------GKPESEIRAFLTSRGMPLGEAP---TDHFGALLLAA 117
                      5555555556666666.499***************7.999***********.......789*************988875...********999 PP

  Nitrate_red_del  98 ahLaereaeaeeaeeaealleaqkafleehllpWlpef 135
                      + L +++a         +  +aq a++++ l+pW+++f
       EHU00382.1 118 SWLEDQSAA--------DESAAQLALFDTFLMPWCGAF 147
                      977766665........4468***************99 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.19
  Nitrate_red_del  18 alaaededllelaaeYtrL 36 
                       l  ++ ++++ +a Y +L
       EHU00382.1 162 TL--AELSREAIQAMYDEL 178
                      33..444455555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1489.42
//
Query:       EHU00383.1  [L=67]
Description: putative PHP family hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 624.98
//
Query:       EHU00384.1  [L=245]
Description: putative zinc-binding hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-08   34.0   0.0    4.1e-08   33.7   0.0    1.3  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   2.3e-12   4.1e-08       1      74 [.       5     110 ..       5     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2.3e-12
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEB.TT...HHHHHHHHHHH.HTTTTSEEEEEEE............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx..................... RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgn.lf...gyvefykaakk.kykagikpiiGleayvaddse..................... 73 
                 dlH+Ht  s+  +  ++ ++v++ak  glk +aiTDhg+ +     y++f++     +  +g+ ++ G+ea++++++                      
  EHU00384.1   5 DLHMHTVASTH-AYSTLHDYVAQAKLNGLKLFAITDHGPdMAdapHYWHFVNMRIWpRIIDGVAILRGIEANIKNQQGeidcsgpmlesldlivagfhe 102
                 89*******88.77778*********************73444445555554332234449*********99888775555555555555554444444 PP

                 ........ CS
                 .......x RF
         PHP  74 .......k 74 
                         
  EHU00384.1 103 pvyaprdL 110
                 44444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2018.92
//
Query:       EHU00385.1  [L=313]
Description: putative 2-hydroxyacid dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-46  156.9   0.0    4.1e-46  156.6   0.0    1.1  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    2.5e-08   34.3   0.0    3.8e-08   33.7   0.0    1.3  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    0.00028   20.9   0.0    0.00044   20.3   0.0    1.4  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
    0.00043   20.2   0.0    0.00075   19.4   0.0    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
      0.014   16.0   0.0      0.026   15.1   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.025   14.8   0.2       0.32   11.2   0.2    2.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.025   14.6   0.0      0.041   13.9   0.0    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.052   13.2   0.1       0.11   12.1   0.1    1.6  1  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   1.8e-49   4.1e-46       4     178 .]     108     278 ..     105     278 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 1.8e-49
                   HHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S- CS
  2-Hacid_dh_C   4 llallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlp 100
                   +l   rr+ ++++++++ +w   + l++++  +  +Gi+G+G +Gq+vak l+a g+ v +++rs k+ + + +  +  + l+++l++++++++ lp
    EHU00385.1 108 VLGWFRRFDDYQQQQQSAQW---QPLPSYSRDQFHIGILGAGVLGQQVAKSLTARGFPVRVWSRSAKQIAGVTS-FAGRDALDDFLRDTQVLINLLP 200
                   78899***************...9999**************************************998884444.44789***************** PP

                   -STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 101 ltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                    t+etr+li+++ la++++ga+++N aRG+ v e++Ll+aL+sg+i+gaalDvf+ eplp+d+pl+ +p+v++tPH a
    EHU00385.1 201 STAETRNLIDQKLLARLPQGAFFLNLARGDQVVEADLLTALDSGQIKGAALDVFQVEPLPADHPLWFHPRVTITPHNA 278
                   ****************************************************************************87 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.7e-11   3.8e-08       2      88 ..     140     225 ..     139     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.7e-11
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilid 88 
                    ig++G Gv+G++ a+ l+++g+ v v+ r+++++  +    + + + + +++++ +v i +++++++++++i++ ll++l +g+++++
     EHU00385.1 140 IGILGAGVLGQQVAKSLTARGFPVRVWSRSAKQIAGVT--SFAGRDALDDFLRDTQVLINLLPSTAETRNLIDQkLLARLPQGAFFLN 225
                    9*****************************99998887..57789999*********************************9999876 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     2e-07   0.00044       2      37 ..     140     175 ..     139     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2e-07
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHH CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeeliee 37 
                     i++lGaG  G  +Ak+l+ +g +vr+w+r++++i  
      EHU00385.1 140 IGILGAGVLGQQVAKSLTARGFPVRVWSRSAKQIAG 175
                     89*****************************98865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.3e-07   0.00075       1      38 [.     139     176 ..     139     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.3e-07
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealeka 38 
                 +++++GaG++G+++a+ + ++g++V++  +s+++++ +
  EHU00385.1 139 HIGILGAGVLGQQVAKSLTARGFPVRVWSRSAKQIAGV 176
                 589***************************99998755 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.2e-05     0.026       2      42 ..     140     176 ..     139     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeel 42 
                    igi+GaG +g+ +a+ l+a+g     ++v  sr+ ++++  
     EHU00385.1 140 IGILGAGVLGQQVAKSLTARG---FPVRVW-SRSAKQIAGV 176
                    9********************...888855.9998888765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00014      0.32       1      80 [.     140     202 ..     140     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppi 80 
                      + i+GaG  Gq va+ l +++ +   + v++rs ++ +               ++    ++ L+  l+++++++nl+p++
       EHU00385.1 140 IGILGAGVLGQQVAKSLTARG-F--PVRVWSRSAKQIA--------------GVTSFAGRDALDDFLRDTQVLINLLPST 202
                      689****************98.5..6*******99943..............3445555555888888888888888877 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.8e-05     0.041      13      97 ..     138     216 ..     130     232 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                   -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE...-SSSSS-SB-HHHHHC CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvis...ataseepilekeevee 97 
                    ++ ++GaG ++++vak L a+g+  v v  R+ ++ + + +   g        + l++ l++  v+i    +ta + ++++++ + +
    EHU00385.1 138 FHIGILGAGVLGQQVAKSLTARGFP-VRVWSRSAKQIAGVTSFA-GR-------DALDDFLRDTQVLINllpSTAETRNLIDQKLLAR 216
                   5789********************9.*******98887775443.44.......2333333333333322226666666666666555 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     5e-05      0.11       1      34 [.     140     174 ..     140     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rle 34 
                 i ilGaG +G+ +a +L++ g +v ++ rs+ +++
  EHU00385.1 140 IGILGAGVLGQQVAKSLTARGFPVRVWSRSAkQIA 174
                 79****************************97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2477.84
//
Query:       EHU00386.1  [L=561]
Description: periplasmic trehalase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.4e-164  546.8   6.2     7e-164  546.4   6.2    1.1  1  Trehalase        Trehalase
    0.00024   20.5   0.4    0.00045   19.6   0.4    1.4  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
  ------ inclusion threshold ------
      0.016   14.0   1.2      0.054   12.2   0.1    2.2  3  Glyco_hydro_63   Glycosyl hydrolase family 63 C-terminal doma


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  546.4   6.2  1.2e-167    7e-164       1     511 [.      62     540 ..      62     541 .. 0.97

  Alignments for each domain:
  == domain 1  score: 546.4 bits;  conditional E-value: 1.2e-167
                 CCTTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHT CS
   Trehalase   1 klfgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrki 99 
                 k ++d+ktf D++++ +++++l++++ ++++      +++dlk+fv ++f+ +         ++ k+ p+      + ++lr    ++n lw+ l+r  
  EHU00386.1  62 KFYPDQKTFADAVPKYDPSSTLADWQMQKNQ------RGFDLKRFVAANFTLP--------TDSDKYVPP------AGQNLR---DHINGLWPVLTR-- 135
                 689************************9999......79************97........334455555......789999...9***********.. PP

                 TTS-SCE-TTECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHHCHCC CS
   Trehalase 100 kkkvgllpeassllplpkpfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyektedd 198
                   +++++ ++ sllplpkp+vVPGgRFrE+YyWDsYf++lGL+es+++d +++mv+nf++l+++YG+i+NgnR+YYlsRSQPP+++ mv++++++ e+d
  EHU00386.1 136 --TTSNTGKYDSLLPLPKPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVQDMVDNFASLLDRYGHIPNGNRTYYLSRSQPPFFSLMVDLLATH-EGD 231
                 ..999******************************************************************************************.*** PP

                 HHHHHHHHHHHHHHHCCTT.......TCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTTHCCHHHHHCCCCHHHHHCCHHCHHHHCCCCT CS
   Trehalase 199 allravlaalkkeyefwma.......eqrldevtklskryllnrygvpeetprpesyledketaeklkkerkkeevyrelkaaaesgwdlssRwlresg 290
                 +++ ++l++l+key++wma        +++++v+kl+++++lnry++ ++ pr+es++ d +ta+k++ +r+k+e+yr+l+a+a+sgwd+ssRw+ + +
  EHU00386.1 232 NVYVRYLPQLQKEYDYWMAdsdsvaaGNASKRVVKLADGTVLNRYWDARDVPRTESWMDDIATANKAP-QRNKAEMYRDLRAGAASGWDFSSRWFTD-A 328
                 *******************9****99999***************************************.****************************.8 PP

                 T-S.TCCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----BGGGGHHHHCT-S-HH CS
   Trehalase 291 hdtgellelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyesatnlvpLwaglaske 389
                 h+   l+++rt++l+pvDLN+l+++lek++++++   ++ ++++ f  +aekr++ai+++LW+ ++g+y+DYd+k++k + +++a++l+pL++++as++
  EHU00386.1 329 HN---LSTIRTTQLAPVDLNSLMFHLEKTLSTAYRLNKQDAQAKAFADRAEKRQAAINRYLWDSKQGWYADYDWKTRKIHPQLTAATLFPLYMQIASDK 424
                 88...********************************************************************************************** PP

                 HHHHHHHHCHHHHCCCCCEESCCCC-SBSSS-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTSTSTTBTT- CS
   Trehalase 390 qaaklvakvlekleesgllvaegglgtsllksgrQWDyPngWaPlqilaveglerygeeelaerlaerwlktvtkafsdegklvEKYdvtreaeygGgg 488
                 q     a++++++ e++ll+ +ggl t++++ g+QWD+PngWaPlq++avegle+y + +la++++ r+l++v+ ++++e+klvEKY v+  +  gGgg
  EHU00386.1 425 Q-----ADSTASAVEKQLLK-PGGLVTTTVNNGQQWDAPNGWAPLQWVAVEGLEHYKKPQLAQQVGLRFLRNVQLTYDKEHKLVEKYVVEGYNLGGGGG 517
                 *.....89999999******.*********************************************************************777777*** PP

                 SSSSTTCSBHHHHHHHHHHHCCH CS
   Trehalase 489 geyvlqeGFGWvNgvvlelLell 511
                 gey+lq+GFGW+Ngv+l+lL+++
  EHU00386.1 518 GEYPLQDGFGWTNGVTLKLLDKY 540
                 ********************987 PP

>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.4   7.5e-08   0.00045     174     256 ..     347     438 ..     264     451 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.5e-08
                      HHHHHHHHHHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS..........-BTT--HHHHHHHHHTT-S-GGGH.HHHHHHHHHHHH CS
  Bac_rhamnosid6H 174 ylvrslklvakiaellgkeedakkyaalaeelkaafnkkyldsetg..........svandtqtanalpLafglvpeaeraakvaerlvkkve 256
                       +++  k+++ + +l +++++ak++a++ae+ +aa+n+ ++ds++g          +++ +  +a ++pL++++   +++a+ +a++++k++ 
       EHU00386.1 347 LMFHLEKTLSTAYRLNKQDAQAKAFADRAEKRQAAINRYLWDSKQGwyadydwktrKIHPQLTAATLFPLYMQIA-SDKQADSTASAVEKQLL 438
                      455666677777788888889*************************999999988888888899***********.55555777777777665 PP

>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.064   3.9e+02      89     131 ..     159     202 ..     139     210 .. 0.83
   2 ?   12.2   0.1     9e-06     0.054     252     318 ..     341     407 ..     332     445 .. 0.84
   3 ?   -3.3   0.1      0.48   2.9e+03     411     429 ..     460     478 ..     449     530 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.064
                     TB-SEEHHHHHHHHHHHHHH.-HHHHHHHHHHHHTT--TT---- CS
  Glyco_hydro_63  89 fFPRGFlWDeGFhqllilkw.dvdltleilasWldlinedGWip 131
                      F   ++WD  F  l + +    d + +++ ++ +l++  G ip
      EHU00386.1 159 RFREVYYWDSYFTMLGLAESgHWDKVQDMVDNFASLLDRYGHIP 202
                     566679********98875413456899999999****999998 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9e-06
                     -HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTEETTTTEE-EEEE-T...... CS
  Glyco_hydro_63 252 hvDlrsWvalaakslksiaellgeeeekekyaktekelsenleklhwseeekayaDlgvhtekvklk 318
                      vDl+s +    k+l++  +l +++ +++ +a+ +++ + +++++ w+++++ yaD+  +t+k++ +
      EHU00386.1 341 PVDLNSLMFHLEKTLSTAYRLNKQDAQAKAFADRAEKRQAAINRYLWDSKQGWYADYDWKTRKIHPQ 407
                     59*************999999999999999*******999******************999877644 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.48
                     -HHHHHHHHHHHHHH---S CS
  Glyco_hydro_63 411 Wininylilsalkhyskve 429
                     W  + ++++++l+hy+k +
      EHU00386.1 460 WAPLQWVAVEGLEHYKKPQ 478
                     7777788888888887433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4078.03
//
Query:       EHU00387.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-44  151.2   0.0    3.1e-44  149.9   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   3.4e-48   3.1e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.4e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHU00387.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHU00387.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHU00387.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHU00387.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHU00387.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHU00387.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2375.86
//
Query:       EHU00388.1  [L=244]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-25   88.6   0.0    3.5e-25   87.9   0.0    1.4  1  YcgR      Flagellar regulator YcgR
    3.6e-08   33.6   0.0    7.4e-08   32.6   0.0    1.5  1  PilZ      PilZ domain


Domain annotation for each model (and alignments):
>> YcgR  Flagellar regulator YcgR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   3.9e-29   3.5e-25       1     106 [.       9     110 ..       9     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 3.9e-29
                 ..E-SHHHHHHHHHHHHHTT--EEEEETT-SSEEEE-EEEEETTTTEEEEE--BSGGGHHHHHTT--EEEEEEETTEEEEEEE---EEEEETTEEEEEE CS
        YcgR   1 YllrnpleIlavLrdLakrkslvtvsfddggqqfltsllavdadkgtlvlDagsneeenqrllaaeeltfvaeldgvkveFtleqlrkvefegrpafaa 99 
                 Yl+r +l++l v++dL + ++++ v+f  +++qf++++la d+++  +v+D+gsn+ +n  +l+ +++t+ ae++g+kveF l++l+k+ef+g+paf+a
  EHU00388.1   9 YLKRGTLAVLGVMKDLLQAQTPLLVNF--SRGQFISRMLAADENR--IVFDLGSNNLDNDYALQCNDITVFAETQGAKVEFALPGLEKTEFDGLPAFQA 103
                 899************************..8************999..**************************************************** PP

                 ---S-E. CS
        YcgR 100 alPesll 106
                 +lPe l+
  EHU00388.1 104 TLPEVLW 110
                 *****98 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   8.2e-12   7.4e-08       1     102 [.     113     230 ..     113     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.2e-12
                 CSSSS-C....EEECEEEEEEETTEE.EEEEEEEEESSEEEEEES...T-SS-TTSE.EEEEEECECEEEEEEEEEEEEEECTCTTE.........EEE CS
        PilZ   1 qrRkekR..levpvsipvtleadege.lkgrliDiSlgGlairlp...deelalgdr.velklpldkdqelslpgrVvrvkpeedge.........rlG 83 
                 qrR+++R   +++ +  +  +  +g+  + rl+D+SlgG+++ ++   +  l+ gd+  +l+++l++ +++++ ++ +++ +++  +         rl+
  EHU00388.1 113 QRREFFRisAPMDPQFWCHCTWPDGSaARLRLQDLSLGGIGVLVDdamPDGLKSGDDfKNLQVELGEYGQFNVNATLMHIGERSMITsknetkvtpRLS 211
                 8******99666666666666666665888******************999****998999999*******************988899999999999* PP

                 EEEEEECHHHHHHHHHHHH CS
        PilZ  84 veFldldeeqrellirllf 102
                 ++F+ l+++q+++l++ +f
  EHU00388.1 212 FRFTALEPHQERQLQQVIF 230
                 ****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1993.59
//
Query:       EHU00389.1  [L=377]
Description: hypothetical protein CKS_2428 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-50  169.4   4.3    1.2e-49  168.7   4.3    1.3  1  MS_channel  Mechanosensitive ion channel


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   4.3   6.5e-54   1.2e-49       3     206 .]     143     342 ..     141     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 6.5e-54
                 HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnssl 101
                 +l+++++v+++l++ls++g++++al+a+lG++g+a++la ++++s+++a++ + f+kp++ GD++ +gdi+Gt+e+igl tt++r+ +g+ +++ n  l
  EHU00389.1 143 LLRVVVWVMMLLAILSNMGIDITALVASLGVGGIAIALAIQTVLSDVFASLAIGFDKPIEHGDFIVFGDIAGTIEHIGLKTTRLRSLSGEQIVCSNTIL 241
                 589************************************************************************************************ PP

                 HTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHH CS
  MS_channel 102 vtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkile 200
                 ++++i+N++r +++rr+++++g+ y+++ ++++++ e +k++++  +++       +++++f+ds l+fev +fv + +++ y+++q+einl+ +++le
  EHU00389.1 242 LQQTIHNYKR-MQQRRLVFTFGISYATPSEQVREISELVKTIIQGIEMTRF---DRAHFLAFDDSKLTFEVVYFVLSADYNVYMDIQQEINLQLMAALE 336
                 **********.*********************************9999996...8899***************************************** PP

                 HHT--- CS
  MS_channel 201 eegiei 206
                 e +i++
  EHU00389.1 337 ERNIRF 342
                 ****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2794.91
//
Query:       EHU00390.1  [L=495]
Description: putative glycerol kinase 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-58  197.1   0.0    4.6e-58  196.7   0.0    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    3.9e-38  131.2   2.1    6.6e-38  130.4   2.1    1.4  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.0   5.2e-62   4.6e-58       1     243 [.       5     250 ..       5     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 5.2e-62
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE-T CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd.kpLynailw 98 
                 +il++D Gtt+ ka+++d+kg++va+++  l+l+ p++g aeqdp++iw a+ +ai  +l+q   +   +++++is+qre++ ++ ++d  pL++ ++w
  EHU00390.1   5 VILAIDEGTTNAKAVAVDRKGRMVARGSHGLTLQHPQPGLAEQDPQAIWSAVRQAIIDCLAQC--DGASVAGVAISNQRESVLIWQRRDgVPLTPLVSW 101
                 589************************************************************..************************9********* PP

                 T--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT..--EEEHHHHCTTTSEETTTTEE-HH CS
      FGGY_N  99 kdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg..qfvtdvtnasesmlfnikklewdee 191
                 +drr+++ ++ l++ g++ ++ + tgl ++++f++ kl+ ++   p+ f++++    +++++d++L+w+Lt    fvtd+ na++++l+ ++  +wd+e
  EHU00390.1 102 QDRRSESFCRDLQQSGSAARISALTGLAVDPMFPAAKLTGMLAAIPDGFARAAagelCIGTVDSWLTWQLTAgtTFVTDHANAARTQLYSLHRNDWDDE 200
                 ****************************************************99*****************999************************* PP

                 HHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHH CS
      FGGY_N 192 llailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaa 243
                 ll ++ +p+++LP++  s+ ++g ++ +     Gl +g+p+ +  gD  aa+
  EHU00390.1 201 LLSLFSLPRAALPQITASASVAGMIRVS--DIPGLAPGTPILARIGDSHAAL 250
                 ***********************99865..667778***********99997 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   2.1   7.3e-42   6.6e-38       2     195 ..     262     445 ..     261     448 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 7.3e-42
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsglra 100
                 k+++GT+s l+++  +p++  +gl t+va  dg+  +a eg i  +gs  awl   lg+     d  +  + la     e   d++g++fvpa+sgl a
  EHU00390.1 262 KATYGTGSSLMMSMATPLLTDNGLSTTVAWHDGQARFAFEGNITHTGSGAAWLGTMLGI----HDPRQL-TALA-----EGCDDNQGCYFVPALSGLGA 350
                 78***************************999************************888....666666.6777.....999***************** PP

      FGGY_C 101 pywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAa 195
                 p wd +arg i gl++  t+a +ar ale+++ q++++  a+e+d g +l  l vd ++++n+ lmq++Ad+l++p+  ++taea alGaA+lA+
  EHU00390.1 351 PWWDLKARGLICGLTDAATPAVLARVALESICWQIADVFFAMEEDCGTALPALCVDDSATQNPWLMQFQADVLQRPLHCAPTAEASALGAALLAG 445
                 **********************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3843.74
//
Query:       EHU00391.1  [L=314]
Description: transketolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-27   95.4   0.2    3.2e-27   94.9   0.2    1.3  1  Transketolase_C  Transketolase, C-terminal domain
    2.7e-17   63.0   0.0    4.5e-17   62.3   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
      9e-09   35.6   0.0    1.6e-08   34.8   0.0    1.4  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
     0.0049   15.6   0.0     0.0089   14.8   0.0    1.4  1  DHDPS            Dihydrodipicolinate synthetase family
  ------ inclusion threshold ------
      0.045   12.7   0.0      0.065   12.2   0.0    1.1  1  Filo_glycop      Filovirus glycoprotein
       0.16   11.8   0.1       0.33   10.8   0.1    1.5  1  Alba             Alba
       0.18   11.3   0.5       0.46   10.0   0.1    2.0  2  DUF3343          Protein of unknown function (DUF3343)


Domain annotation for each model (and alignments):
>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.2   1.3e-30   3.2e-27       1     124 []     181     303 ..     181     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 1.3e-30
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g++++lreg+d++lva+Gs+v+ea+ Aae+Lek+g+sa V+++++++p+ ++ + +++ + + +++vee++++gG+gs va++lae    gl++
       EHU00391.1 181 GQIDRLREGHDIALVAMGSTVHEAVTAAEQLEKQGVSAAVISVPSIRPCNTQQLHNLLSHFRAVITVEEHNINGGVGSLVAEVLAE---YGLPV 271
                      78899*********************************************************************************...9**** PP

                      EEEEEEE-SS..SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdv..iepgsaeelekafgldaeki 124
                      + +r+g+ +      g +++  +++g+da +i
       EHU00391.1 272 KLLRLGIANGeyAIAGDRAATRAHHGIDASSI 303
                      ********876455678889999999999887 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.8e-20   4.5e-17       8     174 ..      10     167 ..       4     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.8e-20
                   HHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHHHHHT CS
  Transket_pyr   8 aeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsgeakgk 104
                   ++ +al   ++++ +vv + aD++     + +   ++    r++++gi+Eqa++ +a+G+al g  ++ v +  + F+     +a+++i  ++   +
    EHU00391.1  10 VMVDALTDAVHRGIDVVPVVADSTSTAKIAPFIDAFPG---RLVNVGIAEQALVSTAAGLALGG--KIAVTCNAAPFLI---SRANEQIKIDVCYNN 98 
                   56678999999999999999999977766667666666...***********************..899999*****99...9************** PP

                   --EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSE CS
  Transket_pyr 105 lkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksl 174
                   ++v+   + ++ ++g  + +h+s+ ++a++r   ++ + +P+ p+e+++++  a+    r+Pv++rl  ++
    EHU00391.1  99 TNVKlFGLNAGASYGPLASTHHSIDDIAVMRGFGNIEIYAPACPVECRQIIDYALD--HRGPVYIRLDGKA 167
                   ****9***************************************************..789*****97665 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   6.3e-12   1.6e-08       2      76 ..     191     265 ..     190     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 6.3e-12
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHHHHH CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlveevka 76 
                 ++++vamGs++ +a +a+++l ++g+++ ++ + ++rP  +++l++ll+++++v++++  +  g  G lv ev a
  EHU00391.1 191 DIALVAMGSTVHEAVTAAEQLEKQGVSAAVISVPSIRPCNTQQLHNLLSHFRAVITVEEHNINGGVGSLVAEVLA 265
                 799******************************************************998878888*****9966 PP

>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.5e-06    0.0089      77     128 ..     197     250 ..     188     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.5e-06
                 ---SSHHHHHHHHHCCCCCT-SEEEEE---SS---H...HHHHHHHHHHHHCHSS CS
       DHDPS  77 vGsnstseaiklakkaeeaGadgvlavtPYYnkpsq...eglyqhfkaiieatdl 128
                  Gs  ++ea+++a++ e++G+ ++++ +P   + ++   ++l +hf+a+i +++ 
  EHU00391.1 197 MGS-TVHEAVTAAEQLEKQGVSAAVISVPSIRPCNTqqlHNLLSHFRAVITVEEH 250
                 688.899*******************999987665511167889******77655 PP

>> Filo_glycop  Filovirus glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.6e-05     0.065     262     316 ..     188     242 ..     176     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
                  ....HHHHTSS-.....SSSSEEEEE...............E-TTS...HH---- CS
  Filo_glycop 262 ddedlatsGkrsgerepnttsdlvtkqglsstmpptpspqpstPeiggndttise 316
                  + +d+a    +s  +e  t+++ + kqg+s+++  +ps +p + ++  n  ++ +
   EHU00391.1 188 EGHDIALVAMGSTVHEAVTAAEQLEKQGVSAAVISVPSIRPCNTQQLHNLLSHFR 242
                  56789999999999*******************************9766555544 PP

>> Alba  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.33      30      53 ..     192     215 ..     185     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                 EEEEEETTHHHHHHHHHHHHHHHT CS
        Alba  30 VvlkatGraIskAvsvaeilkrrf 53 
                 + l+a+G  +  Av+ ae l++++
  EHU00391.1 192 IALVAMGSTVHEAVTAAEQLEKQG 215
                 889*******************98 PP

>> DUF3343  Protein of unknown function (DUF3343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00018      0.46       4      32 ..     196     224 ..     193     226 .. 0.90
   2 ?   -2.8   0.1       1.7   4.4e+03      11      26 ..     283     300 ..     279     306 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
     DUF3343   4 itFssthhAiaaekalkeggiearliplP 32 
                 ++ s++h+A  a + l+++g++a +i++P
  EHU00391.1 196 AMGSTVHEAVTAAEQLEKQGVSAAVISVP 224
                 56689***********************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
     DUF3343  11 hAiaaekalkeg..giea 26 
                 +Aia ++a+ ++  gi+a
  EHU00391.1 283 YAIAGDRAATRAhhGIDA 300
                 677777777766444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2525.41
//
Query:       EHU00392.1  [L=276]
Description: transketolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-39  136.3   0.1    1.9e-39  135.5   0.1    1.3  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    2.3e-11   43.4   0.0    2.2e-06   27.1   0.0    2.7  3  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    5.7e-07   29.4   0.1    1.3e-06   28.2   0.1    1.7  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
      8e-07   28.3   0.0    1.1e-06   27.8   0.0    1.1  1  E1_dh            Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.1   4.3e-43   1.9e-39      21     271 ..      31     269 ..      12     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 4.3e-43
                      T-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS-SS--TTTSTT--S---ST CS
  Transketolase_N  21 ksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsktpGhPelghtagvevttGPL 114
                       +Gh Ga l+ ++i ++l+ ++l+ +P+ ++  +RD ++ s Gha+   Y +l   Gy ++l+ l  +++ +s  pGhP  ++t+gve  tG L
       EHU00392.1  31 AGGHTGADLSQVEILTALYFRILNCAPDRTEDDQRDIYIQSKGHAVGGYYCVLAEAGY-FPLDWLPTYQHADSALPGHPVRQKTPGVELNTGAL 123
                      57********************************************************.899******************************** PP

                      THHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGG.GT--S-HHHHHHHTT CS
  Transketolase_N 115 GqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGete.isftedvakrfeayg 207
                      G G+  avg+ala k+  +             ++v+ gDg l eG   ea+ +a++ +L++Li++ D+nk+ + G+t  i +t+  a++++a+g
       EHU00392.1 124 GHGLPVAVGIALAAKKSHS----------PRRVFVVTGDGELAEGSNWEAALVAAHYGLDNLIIINDKNKLQLAGATRdILNTDPLAEKWRAFG 207
                      ***********99876544..........4679*******************************************97155677799******* PP

                      -EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHH CS
  Transketolase_N 208 WhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaal 271
                       +v e ++g+d++a+ + +e+   +  kP +i  +t  G+g    +g+++ h    + de+a++
       EHU00392.1 208 LEVRE-CNGNDMAAVVNTLENLPVN-GKPQVIIAHTEKGFGISFIQGQAEWHHRVPKGDEIARA 269
                      **988.999***********99887.*************************9999999999876 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.6e-05     0.072      13      62 ..       6      58 ..       4      63 .. 0.81
   2 !   27.1   0.0     5e-10   2.2e-06      98     186 ..     108     194 ..      98     227 .. 0.78
   3 ?    0.7   0.0     0.055   2.5e+02     245     270 ..     213     238 ..     200     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
  DXP_synthase_N 13 lskeeleelaeelrefliesv..sktggHlasnLgvveLtlalh.yvfdtpkD 62
                    ls + le+ a+ +r+ +i+    s  ggH ++ L+ ve+  al+ ++++   D
      EHU00392.1  6 LSVDALEKKARAVRRRIIQLNagSPAGGHTGADLSQVEILTALYfRILNCAPD 58
                    6778899999*****99986523789****************96356666555 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 5e-10
  DXP_synthase_N  98 pkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskyl 186
                     p r+  +   +++g  +  + +a+G+a a++++++ ++v  v GDg l+ G  +ea   +++   + l+i+Nd ++   +  Ga  ++l
      EHU00392.1 108 PVRQKTPGVELNTGALGHGLPVAVGIALAAKKSHSPRRVFVVTGDGELAEGSNWEAALVAAHYGLDNLIIINDKNKL--QLAGATRDIL 194
                     5555555556677777788999**********************************999999999999999997653..3445655555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.055
  DXP_synthase_N 245 idGhdleelikvleevkklkgpvllh 270
                      +G+d+++++++le++    +p+++ 
      EHU00392.1 213 CNGNDMAAVVNTLENLPVNGKPQVII 238
                     68*************99988888775 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1     3e-10   1.3e-06      26      85 ..     119     184 ..     102     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3e-10
                   TTS-TTTHHHHHHHHHHH..STT...SEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBC CS
  TPP_enzyme_C  26 glgtmGyglpaAiGakla..kpd...revvaivGDGgflmi..lqelatavrrnlpitvvvlnNegy 85 
                    +g++G glp+A+G++la  k +   r+v++++GDG ++     ++   a+ ++l+ ++++ + + +
    EHU00392.1 119 NTGALGHGLPVAVGIALAakK-ShspRRVFVVTGDGELAEGsnWEAALVAAHYGLDNLIIINDKNKL 184
                   579**************6341.13458**********875433788889999999888877665555 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.6e-10   1.1e-06      95     202 ..     115     223 ..      95     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.6e-10
                 .BEEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEE CS
       E1_dh  95 rilggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrargvgipglrV 192
                  +    g +g   p++ Gialaak     + +++++GDg  ++G  +ea+  aa ++l   i +   Nk  +  +++   +++ la++ r++g    + 
  EHU00392.1 115 GVELNTGALGHGLPVAVGIALAAKKSHSPRRVFVVTGDGELAEGSNWEAALVAAHYGLDNlIIINDKNKLQLAGATRDILNTDPLAEKWRAFGLEVREC 213
                 46667788999999********************************************994666678******************************** PP

                 ETTSHHHHHH CS
       E1_dh 193 dgnDplavye 202
                 +gnD+ av +
  EHU00392.1 214 NGNDMAAVVN 223
                 ********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2178.46
//
Query:       EHU00393.1  [L=315]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-60  202.2   0.0    9.2e-60  201.9   0.0    1.0  1  Sugar-bind    Putative sugar-binding domain
    8.1e-05   22.4   0.2    0.00025   20.9   0.0    1.9  2  MarR_2        MarR family
    0.00032   20.4   0.6     0.0016   18.2   0.1    2.3  2  HTH_23        Homeodomain-like domain
    0.00085   18.8   0.1     0.0023   17.4   0.1    1.8  1  Sigma70_r4    Sigma-70, region 4
     0.0038   17.5   0.6       0.12   12.7   0.1    2.5  2  KORA          TrfB plasmid transcriptional repressor
     0.0076   16.2   0.2      0.021   14.8   0.2    1.7  1  HTH_37        Helix-turn-helix domain
     0.0094   15.9   0.0      0.028   14.4   0.0    1.7  1  MarR          MarR family
  ------ inclusion threshold ------
       0.01   15.7   0.1      0.035   14.0   0.0    1.9  2  PAX           'Paired box' domain
      0.012   15.5   0.1      0.036   14.0   0.1    1.7  1  HTH_Crp_2     Crp-like helix-turn-helix domain
      0.013   15.2   0.1      0.029   14.1   0.1    1.5  1  HTH_38        Helix-turn-helix domain
      0.018   14.7   0.1      0.042   13.5   0.1    1.7  1  Sigma70_r4_2  Sigma-70, region 4
      0.034   14.6   0.1      0.074   13.5   0.1    1.5  1  HTH_40        Helix-turn-helix domain
      0.061   13.4   0.0        0.2   11.7   0.0    1.8  1  HTH_29        Winged helix-turn helix
      0.074   13.1   0.0       0.19   11.8   0.0    1.7  1  KorB          KorB domain


Domain annotation for each model (and alignments):
>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0   7.2e-63   9.2e-60       8     254 ..      64     314 ..      58     315 .] 0.94

  Alignments for each domain:
  == domain 1  score: 201.9 bits;  conditional E-value: 7.2e-63
                 HHHHHHHHHHT-SEEEEESSTSTT..CHHHHHHHHHHHHHHHHH--TTEEEEE-.SSHHHHHHHHHTHHCCHTCEEEEESBSECSSCHCGSHHHHHHHH CS
  Sugar-bind   8 eleerLkekfglkeaivvpddade..edvlealgraaaqllesllkdgdvvgvg.wGrtlsavaealtpkslrdvkvvqliGglsekvsaevnevvarl 103
                 ele++++++++l +aivv   +++  +++++a+g aaa++le +l++++ +g++ w  t++++++al+p + +   v+ql+Gg++++++ ++  ++++l
  EHU00393.1  64 ELEKAIEQTYQLPQAIVVDVAEQAsvSEIKQAIGSAAAHYLETRLRPDELIGISsWSGTIRCMVDALHPLNASCKGVIQLLGGVGANGNVQATILTQNL 162
                 89****************5444444699*************************54999***********8888889*********************** PP

                 HHHCTSEEE--SSBSB-SSHHHHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCCCCHHHCCT.TS-HHHHHHHHHTTEEEEETTEEEETTS-BCCHCHC CS
  Sugar-bind 104 AqklggeyellpaPavlssaelreallaersikevlelakkadvalvGiGsaseeaklvkrg.flteeelaelreegaVGeilgrffDaeGevveteln 201
                 A  l++ + llp   +  s   r+ l a++ ++evl+++ ++d+a+vGiG+++ +a l ++g +++   l++l+++gaVG+i+ ++fD++G++v  + +
  EHU00393.1 163 AALLNCPAWLLPSQSIEHSVSDRQRLAANPEVAEVLNKFGEVDLAIVGIGDLEPSALLRNSGnYYDATMLRTLAARGAVGDICLHYFDEQGQPVLQADE 261
                 ********************************************************99988725566667889************************** PP

                 CCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTTS-SEEEEEHHHHHHHH CS
  Sugar-bind 202 erviglsledlrkipkviavAggesKaeAilaaLrgglinvLitdestAkalL 254
                 + vig++le++r+ ++v+a+Agg++Ka+Ai++aLrgg++nvLi+d  tA+ l+
  EHU00393.1 262 DPVIGMELEQVRQCSQVVALAGGKEKAQAIRGALRGGYVNVLIVDYPTARLLV 314
                 *************************************************9986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     2e-07   0.00025      15      53 ..      17      53 ..      13      60 .. 0.84
   2 ?   -3.3   0.0       6.8   8.7e+03      11      28 ..     232     245 ..     229     246 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2e-07
                HCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 15 grrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                +  +g    ++++a+ l+ls+s vsril r v+ G v  
  EHU00393.1 17 YYVEG--RKQSDIAQLLKLSQSFVSRILTRSVKEGVVKI 53
                55566..489*************************9975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.8
                 HHHHHCTTTSEEEHHHHH CS
      MarR_2  11 LaaLgrrpgrdltvgela 28 
                 L  L++r+    +vg+++
  EHU00393.1 232 LRTLAARG----AVGDIC 245
                 55666665....667765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.3e-06    0.0016      10      46 ..      13      50 ..       3      52 .. 0.85
   2 ?   -1.1   0.1       1.4   1.8e+03       9      27 ..      78      96 ..      77      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
      HTH_23 10 illllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                i+ l+ + G  +++IA++L  s++ v+r+l r ++eG+
  EHU00393.1 13 IATLYYVeGRKQSDIAQLLKLSQSFVSRILTRSVKEGV 50
                77777766**********************99888885 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
      HTH_23  9 rillllaeGlsvreIAreL 27
                 i+  +ae +sv+eI ++ 
  EHU00393.1 78 AIVVDVAEQASVSEIKQAI 96
                5788899999****98776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.8e-06    0.0023      14      45 ..      15      46 ..      11      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
                HHHHTTT--HHHHHHHHTS-HHHHHHHHHHHH CS
  Sigma70_r4 14 elrfgeglTleEIgerlgiSrerVrqiekrAl 45
                +l+++eg+ +++I++ l +S++ V++i++r +
  EHU00393.1 15 TLYYVEGRKQSDIAQLLKLSQSFVSRILTRSV 46
                699*************************9976 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   9.1e-05      0.12      21      55 ..      11      45 ..       6      52 .. 0.90
   2 ?    2.4   0.0      0.15   1.9e+02      10      39 ..      62      91 ..      59     120 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.1e-05
        KORA 21 veiargvLVegkkqadvatelgltkqavsqavkrv 55
                v+ia    Veg+kq+d+a+ l l++  vs++  r 
  EHU00393.1 11 VKIATLYYVEGRKQSDIAQLLKLSQSFVSRILTRS 45
                68999999*********************998885 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
        KORA 10 ikgleelaeqtveiargvLVegkkqadvat 39
                 + le+  eqt +    + V+  +qa v +
  EHU00393.1 62 FPELEKAIEQTYQLPQAIVVDVAEQASVSE 91
                677888888888888888888888887654 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.6e-05     0.021      18      53 ..       8      43 ..       3      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHT CS
      HTH_37 18 qlalaiaeliekrelsqseaaqllgiaqPkvsrllr 53
                +l+ +ia l   ++ +qs++aqll+ +q+ vsr+l 
  EHU00393.1  8 RLMVKIATLYYVEGRKQSDIAQLLKLSQSFVSRILT 43
                799******************************985 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-05     0.028      10      47 ..      14      51 ..       8      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-05
                HHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                ++ly+ ++ ++s++a  l++s+s v+r+l+r +k+G +
  EHU00393.1 14 ATLYYVEGRKQSDIAQLLKLSQSFVSRILTRSVKEGVV 51
                68999999**********************98887765 PP

>> PAX  'Paired box' domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.035      31      87 ..      19      72 ..       5      96 .. 0.81
   2 ?   -1.8   0.0       2.1   2.8e+03       5      22 ..     141     158 ..     137     204 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
         PAX 31 hsgvrpcvisrqlrvshgcvskilgryqetgsirpgviggskpkvatpevvkkieey 87
                 +g +  +i++ l++s+  vs+il+r  + g ++ +v+    p    pe++k ie+ 
  EHU00393.1 19 VEGRKQSDIAQLLKLSQSFVSRILTRSVKEGVVKISVVP---PANVFPELEKAIEQT 72
                4688999**************************988874...667789998888875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
         PAX   5 vnqlggvfvngrplpdsi 22 
                 ++ lggv  ng      +
  EHU00393.1 141 IQLLGGVGANGNVQATIL 158
                 555677777775444433 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.8e-05     0.036      24      52 ..      24      52 ..      21      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                HHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 24 qeelAsmlGltretvsrilseLkreglis 52
                q ++A++l l+++ vsril++  +eg+++
  EHU00393.1 24 QSDIAQLLKLSQSFVSRILTRSVKEGVVK 52
                89************************997 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.2e-05     0.029      12      43 ..      12      44 ..       7      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
      HTH_38 12 eIerll.aeGlslreIArrLgrspsTIsRElkR 43
                +I++l+  eG  +++IA++L+ s s +sR l R
  EHU00393.1 12 KIATLYyVEGRKQSDIAQLLKLSQSFVSRILTR 44
                69999637***********************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.2e-05     0.042      20      52 ..      15      47 ..      12      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
                  HHHHTS---HHHHHHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2 20 llryleglsykEIAellgisegtVksrlsRArk 52
                  +l+y+eg ++ +IA+ll++s + V + l R  k
    EHU00393.1 15 TLYYVEGRKQSDIAQLLKLSQSFVSRILTRSVK 47
                  79******************9999888888766 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.7e-05     0.074       9      77 ..      18      97 ..      11     107 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.7e-05
      HTH_40  9 leeglsieeIAkerglkesTIegHLaelieegeeidlerlvseeeekeIeeaiek............vgseklkpikealp 77
                + eg +  +IA+  +l++s + + L++ ++eg  ++++ + +++ + e+e+aie+            +++ + ++ik+a +
  EHU00393.1 18 YVEGRKQSDIAQLLKLSQSFVSRILTRSVKEGV-VKISVVPPANVFPELEKAIEQtyqlpqaivvdvAEQASVSEIKQAIG 97
                57899999************************8.99977744455555555555533335555544333444777777665 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016       0.2      10      41 ..      20      50 ..      16      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
      HTH_29 10 eGvstvsqiAkllglsrrtvyrwlkrfeegGl 41
                eG +  s+iA+ll ls + v r+l r +++G+
  EHU00393.1 20 EGRK-QSDIAQLLKLSQSFVSRILTRSVKEGV 50
                8998.*************************96 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.19       3      69 ..      21      83 ..      19     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
        KorB  3 gvkqadIAkaLGksksfvslylklldvpdylrelydseviadirtLyeLrraaekhpaevrafvaen 69
                g kq+dIA+ L  s+sfvs+ l     +  ++ ++   v+ + ++  eL +a e+  +  +a+v + 
  EHU00393.1 21 GRKQSDIAQLLKLSQSFVSRILTRSVKEGVVK-IS---VVPPANVFPELEKAIEQTYQLPQAIVVDV 83
                88*****************9887655555544.32...46788888888888887777777777444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2406.57
//
Query:       EHU00394.1  [L=210]
Description: membrane-bound lytic murein transglycosylase E [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-26   92.0   0.0    3.4e-26   91.2   0.0    1.4  1  SLT       Transglycosylase SLT domain
  ------ inclusion threshold ------
      0.017   14.4   0.0      0.023   13.9   0.0    1.2  1  SLT_2     Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   3.8e-30   3.4e-26       5     114 ..      51     172 ..      48     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 3.8e-30
                 HHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT.....-SHHHHCSHHHHHHHHHHHHHHHHHTTTT.......HHHHHH CS
         SLT   5 kaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk.....lsedelldPeknisagakyLkslykqyng.......slllal 91 
                  a+++ygv+++l+ ai+ vESg+np +vs+s+avGLmQi  +ta+r ++r +     +++ el+dP++ni++g++y+k l ++           +++++
  EHU00394.1  51 SAASQYGVDEKLISAIINVESGGNPGVVSRSNAVGLMQIKAATAGREVYRTQgrrgqPTTAELRDPARNIEIGTAYIKILQQSALSgirdpltLRYATI 149
                 6899*******************************************9999999999*************************99999*****99***** PP

                 HHHHH-HHHHHHTTHSSHHHHHH CS
         SLT  92 aAYNaGegtvkkakkevkkkekk 114
                 ++Y++G+g++ ++++++++++++
  EHU00394.1 150 VSYANGAGALLRTFSRDRDRAIA 172
                 *****************999876 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-06     0.023      51      99 ..      23      71 ..      14     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-06
       SLT_2 51 eeYlkrfvtekriakGraflkehaallariekeyGVpaeiivAiwgvEt 99
                ++Y+k+  t+   a   ++  +++ + +++ ++yGV++++i Ai+ vE+
  EHU00394.1 23 HTYVKEKNTPLTQAPPSRISGTWSLFTESAASQYGVDEKLISAIINVES 71
                566666666666666666666677778899******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1683.30
//
Query:       EHU00395.1  [L=307]
Description: L,D-carboxypeptidase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-30  105.4   0.0    4.8e-30  104.7   0.0    1.4  1  Peptidase_S66C  LD-carboxypeptidase C-terminal domain
    1.3e-25   89.8   0.0    2.3e-25   89.1   0.0    1.4  1  Peptidase_S66   LD-carboxypeptidase N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S66C  LD-carboxypeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   5.3e-34   4.8e-30       2     124 .]     173     288 ..     172     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 5.3e-34
                     EEEEEEEHHHHHCCTTSTTS---TT..EEEEEE--TTHHHHHHHHHHHHCTSTTGGG--EEEEEE--..G...CC...---HHHHHHHHHT-GGG CS
  Peptidase_S66C   2 GrliGGnlsvlasllgtpylpekdlkgkILflEdvsespyridrmLtqlkeagvldkvkGivlGrftkpeekeeeeekeeykealeevlaeiled 96 
                     G+l+GGnl++++sl+gtp++p    ++ IL++Edv+e+p ri+rmL ql ++g+l + ++i+ G+ft+++ + + ++  +    + +v++   + 
      EHU00395.1 173 GTLWGGNLAMISSLIGTPWMP--AITDGILVIEDVNEHPFRIERMLLQLHQCGILAQQRAIITGSFTSTALS-DYDNGFD----FATVWQYLRDL 260
                     9********************..7899****************************************66332.2223344....66666555567 PP

                     TTS-EEEEESESSSBS---EEETSEEEE CS
  Peptidase_S66C  97 lkiPvlynldiGHtspnltlplGakael 124
                     +++Pv+ +ld+GH+++++tlplGa+a+l
      EHU00395.1 261 SGLPVISDLDFGHGPDTVTLPLGARATL 288
                     78************************97 PP

>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   2.5e-29   2.3e-25       1     121 []       6     128 ..       6     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 2.5e-29
                    EEEE-SSS-GGGSSH.HHHHHHHHHHHHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHHHHC-TTE.CEEEES--SS-CHHCHHHH-HCCHHC... CS
  Peptidase_S66   1 iaivapSsglkkeeekeeleraievleelglevvlgksaaksagylagtdeeRaadLnealadpei.kaiicarGGygaarllpyldfdaikk... 92 
                    i+++apS++++   ++++ + ++e+l++ g++v+ + ++a++ +++agtd+eR++d+n++++  +  ++++++rGGyga+rllp ++++a+++   
     EHU00395.1   6 IRLIAPSGYCH---NQPAAHLGVERLRAAGHQVENTGAIARRFQRFAGTDSERLDDINALADLATLpDIVLAVRGGYGATRLLPSINYAALQRrla 98 
                    89*****9996...3579****************8888889999****************998664499********************8877777 PP

                    .S--EEEE-CCHHHHHHHHHHCHTBSEEE- CS
  Peptidase_S66  93 .npkiliGySDiTalhlalyaktglvtlhg 121
                     +p  l+G+SD+T+++lal +++g++++ g
     EHU00395.1  99 dQPLALCGHSDFTVIQLALLQHAGIISFSG 128
                    7**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2536.83
//
Query:       EHU00396.1  [L=221]
Description: metallo-beta-lactamase superfamily protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-06   27.7   0.4    4.4e-06   26.8   0.3    1.5  1  Lactamase_B  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.3   2.5e-10   4.4e-06      78     195 ..      65     182 ..      46     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.5e-10
                  HHHCCHCHHHHHHHHHCCHH......TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEE.TTCCEEEECTTTSSHHCCCCCC.TTCEE CS
  Lactamase_B  78 eapalfmeeaddaasrkgll......lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvvey.gggkvlftGDallagetgridltlrgae 168
                  ++++ ++ ++  +  + ++l      l + s++    d+  ++++++g+  l +t+g+++g++++ +++ +g ++lf+GD+l +    +++       
   EHU00396.1  65 WHESAPGAAV-IQKRFSSALychsrsLGQISRFVEPDDTFTQQETHFGDFHLLPTPGHTPGSCSYLYHSpQGPTYLFVGDTLTRDHDRWVTV-----L 156
                  3333333333.33333333368888888889999999999*****************************888899********999999999.....5 PP

                  E-SHCHHHHHHHHHHHHHHHCHSEEEE CS
  Lactamase_B 169 vrdpsdaekyldsllklaglkaevlvp 195
                  v d  +ae +  sl+ ++ l+++v+++
   EHU00396.1 157 VADSNPAELAA-SLELYRSLRPDVVLM 182
                  55555555555.9999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1770.25
//
Query:       EHU00397.1  [L=138]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-11   44.7   0.0    1.4e-11   44.4   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.6e-11   43.0   0.0    5.5e-11   42.7   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.3e-09   37.1   0.0    4.2e-09   36.7   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00011   22.1   0.0    0.00014   21.7   0.0    1.2  1  FR47             FR47-like protein
    0.00017   21.6   0.0    0.00028   21.0   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   3.9e-15   1.4e-11      34     108 ..      40     117 ..      16     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.9e-15
  Acetyltransf_10  34 lvae.eggkivGvielrdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFka 108
                      ++++ +g k++G  ++++g+  +i ll V+++ rgqG g++L+ a+e+ea+++g +    v+  + +a+pfYeklG+++
       EHU00397.1  40 FICDaQGRKLAGLTGTTTGNwlRIDLLWVAQALRGQGTGRQLVLAAEQEARQRGCR-FAQVDTGSfQAKPFYEKLGYRV 117
                      44540457899***9988888*****************************999998.999***999***********96 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.5e-14   5.5e-11      24     117 .]      28     115 ..       8     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.5e-14
                     HHHHHHSTTCEEEEEEETTE.EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  24 feesfsleaegllvaeedge.liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     f++   + + gl+++   g+ l+G  + +  ++       i+ l+V+ + rg+G G++L+ a+e++ar++g+ + +++v+    +a ++YeklG+
      EHU00397.1  28 FYDADLIKPLGLFICDAQGRkLAGLTGTTTGNW-----LRIDLLWVAQALRGQGTGRQLVLAAEQEARQRGC-R-FAQVDTGSFQAKPFYEKLGY 115
                     333344455588886666665999999999999.....9*********************************.4.6778888999*********8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.2e-12   4.2e-09      23      75 ..      57     116 ..      25     117 .. 0.67

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.2e-12
                     ES..TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEE.EEEETHH..HHHHHHHHTTEE CS
  Acetyltransf_7  23 ld..aeitrlaVdpeyrgkGiGraLlea.ae....kgiile.qlelnae..kaikfYeklGFe 75 
                     ++    i  l+V+++ rg+G Gr+L+ a ++    +g++ + q+ +     +a +fYeklG++
      EHU00397.1  57 TGnwLRIDLLWVAQALRGQGTGRQLVLAaEQearqRGCR-FaQVDT--GsfQAKPFYEKLGYR 116
                     222344555****************96532245678887.555555..234899********8 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     4e-08   0.00014      24      80 ..      63     118 ..      41     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4e-08
                 EEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  24 lgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 +  l v +  r++G g++lv a  +e ++rg   ++ v ++  ++  +yeklG++++
  EHU00397.1  63 IDLLWVAQALRGQGTGRQLVLAAEQEARQRGCR-FAQVDTGSFQAKPFYEKLGYRVR 118
                 557889999*******************99975.99******************987 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.7e-08   0.00028      20      59 ..      56      95 ..      40      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.7e-08
  Acetyltransf_CG 20 rkegvldfthTeVpeelrGkGiAkkLvkaalddareeglk 59
                     + ++ l ++   V ++lrG+G +++Lv aa ++ar++g +
       EHU00397.1 56 TTGNWLRIDLLWVAQALRGQGTGRQLVLAAEQEARQRGCR 95
                     455678888999************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1024.66
//
Query:       EHU00398.1  [L=47]
Description: hypothetical protein CKS_2419 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 424.10
//
Query:       EHU00399.1  [L=39]
Description: hypothetical protein CKS_2418 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 357.78
//
Query:       EHU00400.1  [L=59]
Description: hypothetical protein CKS_2416 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 486.48
//
Query:       EHU00401.1  [L=109]
Description: hypothetical protein CKS_2415 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 986.62
//
Query:       EHU00402.1  [L=188]
Description: hypothetical protein CKS_2414 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1607.81
//
Query:       EHU00403.1  [L=82]
Description: uncharacterized DUF883 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-11   44.2   1.2    3.6e-11   43.5   1.2    1.4  1  DUF883    Bacterial protein of unknown function (DUF883)
    9.4e-09   35.0   0.3    1.2e-08   34.7   0.3    1.1  1  CsbD      CsbD-like


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   1.2     4e-15   3.6e-11      36      94 .]      24      82 .]       1      82 [] 0.77

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 4e-15
      DUF883 36 leerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94
                 ++  +rar ++r+ ++++   a++aa++ +d  + nP + +++AagvG++lG+Ll r+
  EHU00403.1 24 TDSPRHRARGAARRYTNQASYAARDAADCIKDQMQSNPFAGLAVAAGVGVVLGFLLGRK 82
                445568888888999999999999999999999***********************996 PP

>> CsbD  CsbD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.3   1.3e-12   1.2e-08       2      53 .]       4      55 ..       3      55 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.3e-12
        CsbD  2 kikgkaeqvkGkvKeaaGkaTgdekleaeGkadqlkGkaqqkygdakdaakd 53
                ki+ ++++v+G++ +++G++T++++ +a G a++   +a  ++ da d +kd
  EHU00403.1  4 KIEDAVKEVAGAAEQQWGEVTDSPRHRARGAARRYTNQASYAARDAADCIKD 55
                8*******************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 715.36
//
Query:       EHU00404.1  [L=390]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-25   87.6  26.7    9.1e-18   64.3   9.7    2.0  2  Sugar_tr  Sugar (and other) transporter
    9.1e-22   77.5  43.9    6.8e-12   45.0  18.0    2.1  2  MFS_1     Major Facilitator Superfamily
     0.0026   16.2  17.9      0.026   13.0   9.7    2.4  2  MFS_3     Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   9.7   1.5e-21   9.1e-18       5     164 ..      18     178 ..      14     210 .. 0.87
   2 !   27.7  10.9     2e-10   1.2e-06     255     430 ..     200     373 ..     184     380 .. 0.72

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.5e-21
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.... CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.... 99 
                  a+g ++++Y ++++g+ +t+++ +++f+l+ +++      +l+ ++++i+++ + +G+l++g lgdr+GRk++l+++ +l+  ++  +++++ +    
  EHU00404.1  18 GAVGNFIEWYEFAIYGFLATIIA-HNFFQLQGESALSG--LILTWASFAIAFFFRPLGALVFGRLGDRLGRKPVLITVLILMTLATTAIGLIPTYatag 113
                 47889*****************9.66666666665554..488999999*********************************99999999999887777 PP

                 .SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS CS
    Sugar_tr 100 .nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnkt 164
                   +  +l++ R+l G+++G++++ +  ++ E+Ap   Rg+ + ++ l ++fG lva ++ l++ +t
  EHU00404.1 114 iLAPVLLTALRILQGLFAGGEYGGAVALMTEFAPRGQRGRYGAWQSLTVAFG-LVALWLRLAITET 178
                 7788888888*****************************************9.6888888887665 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 2e-10
                 HHHHHHHHHHHHHTTHHHHHHHTTTHHHHS..S-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHH CS
    Sugar_tr 255 lligvvlqifqqltGinaimyysptifenl..glsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasiv 351
                 ++++++  ++    G+  + +++ ++ + l  g+++ ll+ +i  v  +++++ a  ++dr+GRR++++  ++  +++++ l    +++ ++ +    +
  EHU00404.1 200 IFLAIARVMLWSSAGYTCLVIMPGYLQSALhtGMNQALLIAVIANVGFALTIIPAGIVSDRVGRRRVMVSASVLLLLMAMPLL--KIVQADGVSLLLKA 296
                 55566666666666777777777777776511666666666666665555566667*********877666666666666665..44444444556778 PP

                 HHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHH.HHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHH CS
    Sugar_tr 352 aivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavav.nwlanflisllfpiiteaigggyvflvfaglavlfi 430
                 ++v+ia  ++   +g+gp +   +sE+fp+ vR+++l +a+a+ n +++   +l+++ + ++ g+  + + +++  +l+ 
  EHU00404.1 297 LVVLIAGGLVGLLAGPGPAM---LSEMFPTTVRYTGLGVAYALsNAVFSGCAGLIITGLIKQTGNLDIPAWYMMATALVS 373
                 88888888888888888887...8****************9852778999999999999999998888877777766655 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0  18.0   1.1e-15   6.8e-12       4     135 ..      21     167 ..      18     172 .. 0.77
   2 !   38.5  17.8   1.1e-13   6.5e-10      12     166 ..     215     375 ..     200     389 .. 0.73

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1.1e-15
       MFS_1   4 aaflsalarsilgpalplalaedlg.......ispseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf...a.ss..lw. 86 
                 + f+  + ++i+g++++ ++a+++        +s+  + +  +++ +++  +++l++Grl+dr+Gr++vl++ l+l+ l+ ++++l+   a ++   + 
  EHU00404.1  21 GNFIEWYEFAIYGFLAT-IIAHNFFqlqgesaLSGLILTWaSFAIAFFFRPLGALVFGRLGDRLGRKPVLITVLILMTLAtTAIGLIptyAtAGilAPv 118
                 56667777777777777.56555433444444788888884444566677******************************4444443322243344555 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGai 135
                 ll +lr+lqGl+ag+ + +++al+++ +p+ +rgr+ ++ s+++++G +
  EHU00404.1 119 LLTALRILQGLFAGGEYGGAVALMTEFAPRGQRGRYGAWQSLTVAFGLV 167
                 6*****************************************9999986 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 1.1e-13
       MFS_1  12 rsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa..sslw.lllvlrv.lqGlgagalfp 104
                 +++ ++++p +l+++l+    ++ l++++  +g+a++++p+G +sdr+Grrrv++ + +l++l+ +++l  ++   ++  ll +l v ++G   g+l+ 
  EHU00404.1 215 YTC-LVIMPGYLQSALHTGMNQALLIAVIANVGFALTIIPAGIVSDRVGRRRVMVSASVLLLLM-AMPLlkIVqaDGVSlLLKALVVlIAGGLVGLLAG 311
                 333.455566*******999********************************999999999999.66663543556666455444442444444***** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGa.ilgpllggllasslg.Wravfyilaivsllafv 166
                  g a+++++fp + r  ++g+++a +++ +  ++ l+   l+ + g    + + + + +l+++ 
  EHU00404.1 312 PGPAMLSEMFPTTVRYTGLGVAYALSNAVFsGCAGLIITGLIKQTGnLDIPAWYMMATALVSIP 375
                 ***********************97777766777777777775555555555555555555543 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.6   0.00011      0.66      62     115 ..      73     129 ..      47     140 .. 0.84
   2 !   13.0   9.7   4.3e-06     0.026      11     107 ..     200     294 ..     192     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00011
       MFS_3  62 silaGalaDnfdrRkvllavqlllalvsvllt...vlaalgllspwlllaltlligi 115
                 +++ G l D + r+ vl++v +l+ l+++ +    + a+ g+l+p+ll al +l g+
  EHU00404.1  73 ALVFGRLGDRLGRKPVLITVLILMTLATTAIGlipTYATAGILAPVLLTALRILQGL 129
                 7899******************999888765411167889**********9998875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.3e-06
       MFS_3  11 vFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlll 107
                 +F +i    l s+ G     +  ++l + +++  ++  l+ + a +   l  i+aG+++D + rR+v++ + +ll+l ++ l  +++ + +s  lll
  EHU00404.1 200 IFLAIARVMLWSSAGYTCLVIMPGYLQSALHTGMNQALLIAVIANVGFALTIIPAGIVSDRVGRRRVMVSASVLLLLMAMPLLKIVQADGVS--LLL 294
                 566666677889999999999999**************************************************999999877666555433..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3018.88
//
Query:       EHU00405.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.7   4.0    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.7    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.6e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00405.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.6e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00405.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00405.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00405.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00405.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00405.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00405.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00405.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00405.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00405.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00405.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00405.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00405.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00405.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00405.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU00405.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00405.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00405.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00405.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU00405.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00405.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00405.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00405.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00405.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00405.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00405.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00405.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00405.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00405.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00405.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU00405.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU00405.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU00405.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00405.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00405.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00405.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1035  (0.0577277); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 3478.83
//
Query:       EHU00406.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHU00406.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 853.48
//
Query:       EHU00407.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00407.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00407.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00407.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00407.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 816.07
//
Query:       EHU00408.1  [L=37]
Description: hypothetical protein CKS_2408 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 297.20
//
Query:       EHU00409.1  [L=399]
Description: FAD-binding monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-48  164.7   0.0    4.9e-48  164.2   0.0    1.2  1  FAD_binding_3   FAD binding domain
    2.6e-09   36.7   0.3    4.2e-05   22.8   0.2    2.2  2  FAD_binding_2   FAD binding domain
    8.3e-08   32.4   0.2      2e-07   31.1   0.2    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    9.1e-08   32.1   0.0    5.7e-06   26.1   0.1    2.3  2  DAO             FAD dependent oxidoreductase
    6.6e-07   28.8   0.0    3.2e-05   23.3   0.0    2.4  2  Thi4            Thi4 family
    1.8e-06   26.9   0.0    2.9e-06   26.2   0.0    1.3  1  HI0933_like     HI0933-like protein
    3.4e-06   26.3   1.2    0.00013   21.1   0.7    2.8  2  Lycopene_cycl   Lycopene cyclase protein
    8.6e-06   24.9   0.1      0.023   13.6   0.0    2.7  2  Trp_halogenase  Tryptophan halogenase
    2.9e-05   23.5   0.0    4.2e-05   23.0   0.0    1.4  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      8e-05   22.2   0.7    0.00073   19.0   0.7    2.0  1  FAD_oxidored    FAD dependent oxidoreductase
    9.8e-05   21.7   0.0    0.00028   20.2   0.0    1.8  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00082   19.9   0.0     0.0018   18.8   0.0    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0015   17.7   0.0     0.0041   16.2   0.0    1.6  2  GIDA            Glucose inhibited division protein A
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.043   13.7   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.061   13.8   0.0       0.11   13.0   0.0    1.4  1  NAD_binding_7   Putative NAD(P)-binding
      0.083   11.9   0.0       0.13   11.2   0.0    1.3  1  SE              Squalene epoxidase
       0.12   11.5   0.1       0.77    8.8   0.0    1.9  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.21   10.8   0.5       0.49    9.6   0.3    1.7  2  Amino_oxidase   Flavin containing amine oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   4.9e-51   4.9e-48       3     330 ..      10     331 ..       8     350 .. 0.81

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 4.9e-51
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH.CHHCST CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle.lesspe 97 
                    d +I+G+GpaGlmla lL++aG +vv++ek+++  +++r+d++++ t++++ +lGl d +l     ++ ++++  +  ++ +  +ad + l  +++
     EHU00409.1  10 DCCIIGGGPAGLMLAYLLARAGLQVVVLEKHADFLRDFRGDTIHPFTLQIMHHLGLLDALLTLP--HQRVEKLQAEM-GGEEVTMADFSrLPVRCR 102
                    789*********************************************************9888..55544444333.55678899999677**** PP

                    -CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEEEEE CS
  FAD_binding_3  98 rvtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvldvlf 192
                     ++ +pq+++++ L+e+ ++   +++ ++t  + l  ++ +v  ++ ++ +g+  ++ra+ +vGaDG  S +r+++g++ + ++   ++ ++ ++ 
     EHU00409.1 103 FIAFMPQWDFLNFLAEKSAQFSgFTLLKSTVCRELITENGQVCGVLAEQ-AGQPMEIRARLVVGADGRDSVIRAQAGLSSQHFGAPRDVLWFHLNK 197
                    ***************99888776**********9999999988877777.68888************************99888776677777765 PP

                    EC-SCCCTTCCEEEEECCTTEE.EEEECCETEEEEEEEEECCE-GGGS.....CCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEEEEEEEESSS CS
  FAD_binding_3 193 dadlsdiveplvlilsaesrgv.mviPlentlerfyvqvearaekeer.....sekfteeevkarlreivgektldv.eieevsawtvaqrvaeky 281
                    + d +     l+ ++++ +r    vi + +     y+q+ ++ +k++      +     ++ +a++    ++  ++v + e+ + + ++    +++
     EHU00409.1 198 QPDDP-----LTGMGHTGPRNNfIVIDRGD-----YWQCGLTIPKGQFealqaQGLDALKDTIAAVSPFAASRLAEVdSWEKLKLLSIRIDRLDQW 283
                    55433.....33455555554315666666.....999999998888733221222234667777888888889999777889999********** PP

                    EETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGG CS
  FAD_binding_3 282 rkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeel 330
                     k  v+++GDAaH+++P gG+G+N+aiqDav  a  L   l+ ++  +l
     EHU00409.1 284 AKPGVLCIGDAAHAMSPIGGVGVNLAIQDAVAAANLLTRPLR-RGTLKL 331
                    *************************************99998.555444 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   4.2e-08   4.2e-05       1      32 [.      10      41 ..      10      44 .. 0.92
   2 !   11.9   0.0   8.7e-05     0.086     147     200 ..     116     168 ..      72     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.2e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   D  +iG+G AGL+ A+ +a+aGl+v+v+ek  
     EHU00409.1 10 DCCIIGGGPAGLMLAYLLARAGLQVVVLEKHA 41
                   6679*************************975 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 8.7e-05
                    HHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE--- CS
  FAD_binding_2 147 lvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatg 200
                    l+e+  +    +++ +t  +eLi+e+g+v G+ +e  + g+  +ira+ vv a g
     EHU00409.1 116 LAEKSAQFSgFTLLKSTVCRELITENGQVCGVLAE--QAGQPMEIRARLVVGADG 168
                    55555454459************************..999999999998888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.2     2e-10     2e-07       1      30 [.      13      42 ..      13      44 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   I+G+G +Gl +AylLa+ag++v++lek+ +
     EHU00409.1 13 IIGGGPAGLMLAYLLARAGLQVVVLEKHAD 42
                   9**************************987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   5.8e-09   5.7e-06       1      31 [.      10      42 ..      10      53 .. 0.93
   2 ?    3.8   0.0     0.035        35     147     201 ..     111     168 ..     105     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.8e-09
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                d +iiGGG +Gl  Ay Lar+g  V++lek+ +
  EHU00409.1 10 DCCIIGGGPAGLMLAYLLARAGlqVVVLEKHAD 42
                789***************************965 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.035
                 HHHHHHHHH.HHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEE..EEE--G CS
         DAO 147 kltaalara.aealGveilegtevtgleeedgkvwgverttp.gendaada..vVnaaG 201
                  ++++la++ a+  G ++l+ t  ++l  e+g+v gv  +++ g+  +++a  vV a G
  EHU00409.1 111 DFLNFLAEKsAQFSGFTLLKSTVCRELITENGQVCGV-LAEQaGQPMEIRArlVVGADG 168
                 7999*****9999*************98889999999.445546543345553766655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.2e-08   3.2e-05      17      50 ..       8      40 ..       2      44 .. 0.91
   2 ?    2.9   0.0     0.056        56     103     172 ..     116     173 ..     109     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.2e-08
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers 50
                 +D  i+G+G++GL  ay la++ +l+v++le++
  EHU00409.1  8 SADCCIIGGGPAGLMLAYLLARA-GLQVVVLEKH 40
                689********************.********98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.056
                 HHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--GSSSTT CS
        Thi4 103 llskvlqlanvkllnavaveDlivregegvaGvvinwtlvelahdtqscvDPlvirakvvvdatGhdgei 172
                 l+ k  q ++  ll++++  +li+ +  +v Gv       e+a        P  ira++vv a G d+ i
  EHU00409.1 116 LAEKSAQFSGFTLLKSTVCRELITEN-GQVCGVLA-----EQAG------QPMEIRARLVVGADGRDSVI 173
                 67777888888888888888888888.67888764.....3443......68888888888888888766 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.9e-09   2.9e-06       2      39 ..      10      47 ..       9      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.9e-09
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39
                 d  +iGgG+AGlm A  +a++g +V++lek   ++r +
   EHU00409.1 10 DCCIIGGGPAGLMLAYLLARAGLQVVVLEKHADFLRDF 47
                 678****************************9998865 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.7   1.3e-07   0.00013       1     140 [.      10     168 ..      10     186 .. 0.56
   2 ?    0.8   0.0       0.2     2e+02     256     298 ..     286     333 ..     275     385 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.3e-07
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdefedlga..............leecvehsWsgtivylddgkkillg.ra 80 
                    D  +iG+GpAgl lA  l  a++gl+vv++e  ++ l+  +  +   +  ++                  e +++   g +v ++d+++  +  r 
     EHU00409.1  10 DCCIIGGGPAGLMLAYLL--ARAGLQVVVLEKHADFLRDFRGdTIHPFTLQIMHhlglldalltlphqRVEKLQAEMGGEEVTMADFSRLPVRcRF 103
                    789***************..***********99999876544433333333222344444443333221122233333444555555544444333 PP

  Lycopene_cycl  81 Ygrvsskrlkeellerlv.engvklleakvesveeeeageslvvleggr....kirarlvvdarg 140
                     + + + ++ + l+e+ +  +g +ll+++v +    e+g++  vl++      +irarlvv a g
     EHU00409.1 104 IAFMPQWDFLNFLAEKSAqFSGFTLLKSTVCRELITENGQVCGVLAEQAgqpmEIRARLVVGADG 168
                    34455556666666665545666677777766555555555544443333356677777776666 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
  Lycopene_cycl 256 qkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres.....s 298
                    + vl iG aa ++ P  G  v  +++ a   a+ + + lr+      +
     EHU00409.1 286 PGVLCIGDAAHAMSPIGGVGVNLAIQDAVAAANLLTRPLRRGtlklsD 333
                    34899**************99999999998888888888864332221 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.3e-05     0.023       3      34 ..      12      40 ..      10      72 .. 0.79
   2 !    8.1   0.1    0.0011       1.1     158     348 ..     114     318 ..     107     343 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlvese 34
                     i+GGG+aG + A +la+a+   l+v ++e+ 
      EHU00409.1 12 CIIGGGPAGLMLAYLLARAG---LQVVVLEKH 40
                    79******************...999999986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
                     HHHHHH.HHHCT-EEEE--EEEEEE-TTS-EEEEEETT...S-EEE-SEEEE-SGGG-IIIIIIT---EEE-TTT----EEEEEEEE--H..... CS
  Trp_halogenase 158 kfLrrv.aearGvtrvegkvvevqldedgrveslrled...greveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavqvesee..... 243
                     +fL +  a+  G t ++ +v    + e+g+v ++  e+     e+ a+l++ + G  + + +qa   g  +  +++   r +     +++     
      EHU00409.1 114 NFLAEKsAQFSGFTLLKSTVCRELITENGQVCGVLAEQagqPMEIRARLVVGADGRDSVIRAQA---GLSS--QHFGAPRDVLWFHLNKQpddpl 203
                     5665440444578888888877778888888887777663334666778888888888888876...4443..3343444443333333313344 PP

                     ....---SSEEEEE-SSEEEEEEEETTEEEEEEEE-TTTS....-HHHHHHHHHHHCT--TTT.S-.EEEE---EEES-SEETTEEE-CCCTEE- CS
  Trp_halogenase 244 ....lvepytrataekaGWtWkiPLqhrlgnGyvyssaha....dddeAlaellaeldgklea.ep.rkirfttGrrkqawvknvvalGlasgfv 328
                         +  p+ + +  + G  W+  L+   g+  +   + +    d   A+  + a   ++++  e+ + ++++  r  q  +++v+ +G+a+ ++
      EHU00409.1 204 tgmgHTGPRNNFIVIDRGDYWQCGLTIPKGQFEALQAQGLdalkDTIAAVSPFAASRLAEVDSwEKlKLLSIRIDRLDQWAKPGVLCIGDAAHAM 298
                     44444455555777788888888887777774444444444443444555555554444443313357788888899999999************ PP

                     -CCCS-HHHHHHHHHHHHHH CS
  Trp_halogenase 329 ePlestsihliqaalrrLla 348
                      P+ + ++ l+ +++   ++
      EHU00409.1 299 SPIGGVGVNLAIQDAVAAAN 318
                     *********99885544443 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.2e-08   4.2e-05       2      31 ..      13      41 ..      12      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.2e-08
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgn 31
                 IiG+GPaGl  a+ l +agl ++++lEk++
   EHU00409.1 13 IIGGGPAGLMLAYLLARAGL-QVVVLEKHA 41
                 9*******************.7******84 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.7   7.4e-07   0.00073       1     153 [.      10     178 ..      10     190 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.4e-07
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg.vl...GGlltsglvatdignkaeeqvvtgiareflerlrq....rggarlk.krskwn...... 82 
                   D +++GGgpaG++ A+  araG +v+++e++  +l    G +       ++++     +   +    ++r+++    +gg++ + +++  +      
    EHU00409.1  10 DCCIIGGGPAGLMLAYLLARAGLQVVVLEKHAdFLrdfRGDTIHPFTLQIMHHL---GLLDALLTLPHQRVEKlqaeMGGEEVTmADF--Srlpvrc 101
                   899**************************8641331113444444444444444...3444444444444444111222222222222..1344566 PP

  FAD_oxidored  83 .....tfepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDATg.dGdlaalaG 153
                        + + ++++ ++e+  + +g t+l  t+ +e ++e++++ +v +e+  +  +irA++++ A g d  + a+aG
    EHU00409.1 102 rfiafMPQWDFLNFLAEKSAQFSGFTLLKSTVCRELITENGQVCGVLAEQAGQPMEIRARLVVGADGrDSVIRAQAG 178
                   67754555567777777777888888888888888888877888888865445888888888877543455555565 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.8e-07   0.00028       2     178 ..      10      44 ..       3      85 .. 0.72
   2 ?   -2.8   0.0         3   2.9e+03     259     279 ..     276     302 ..     271     317 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.8e-07
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  d+++iGgGpAGl +a  la+ag++v+++e                                                                     
   EHU00409.1  10 DCCIIGGGPAGLMLAYLLARAGLQVVVLE--------------------------------------------------------------------- 38 
                  55677777777777777777777777765..................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                                                                                               +l
   EHU00409.1  39 -------------------------------------------------------------------------KHADFL 44 
                  .........................................................................333333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
                  E--TTSBESSTTEEE-GGGC......T CS
                  xxxxxxxxxxxxxxxxxxxx......x RF
  Pyr_redox_2 259 vvdeflrtnvpgiyaiGDva......g 279
                   +d+  +   pg+  iGD a      g
   EHU00409.1 276 RIDRLDQWAKPGVLCIGDAAhamspiG 302
                  566666777899999999996665542 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.8e-06    0.0018       4      38 ..      13      47 ..      10      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.8e-06
                EECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS CS
   Pyr_redox  4 vvGgGyiglElAgalaelgkkVtvversdkllrll 38
                ++GgG  gl+lA  la+ g +V v+e +  +lr +
  EHU00409.1 13 IIGGGPAGLMLAYLLARAGLQVVVLEKHADFLRDF 47
                9***************************9999544 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.2e-06    0.0041       1      33 [.      10      42 ..      10      50 .. 0.91
   2 ?   -1.9   0.0       1.4   1.4e+03     117     149 ..     133     168 ..     123     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.2e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GG CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkld 33
                d+ +iGgG AG+  A+ +ar+G++v+ + ++ d
  EHU00409.1 10 DCCIIGGGPAGLMLAYLLARAGLQVVVLEKHAD 42
                789***********************9977766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
                 -EEEEEECTTEEEEEEETTS...-EEEECEEEE--T CS
        GIDA 117 eveeliveekkvkgvvtedg...etikakavviatG 149
                  + eli+e+++v+gv+ e+     +i+a+ vv a G
  EHU00409.1 133 VCRELITENGQVCGVLAEQAgqpMEIRARLVVGADG 168
                 4578999999****9887531114566666666655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-05     0.043       3      39 ..      12      48 ..      10      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-05
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdiseealekal 39
                 +iG G  G  +a+++a+agl+Vv+++ ++++l++ +
  EHU00409.1 12 CIIGGGPAGLMLAYLLARAGLQVVVLEKHADFLRDFR 48
                59****************************9998765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011      0.11       7      39 ..       8      40 ..       4      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleagakvtvvape 39
                      ++++GgG+ ++  ++ l++ag +v+v+ + 
     EHU00409.1  8 SADCCIIGGGPAGLMLAYLLARAGLQVVVLEKH 40
                   678**************************9887 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.13     125     176 ..     281     337 ..     256     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
          SE 125 sknekkGlillGDalnmRHPltggGmtvalnDivllskllkpl.....edlsdeekv 176
                 ++  k G++ +GDa     P+ g G+  a++D+v  ++ll+         lsd +kv
  EHU00409.1 281 DQWAKPGVLCIGDAAHAMSPIGGVGVNLAIQDAVAAANLLTRPlrrgtLKLSDLHKV 337
                 567899***************************988888753212222455555555 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00077      0.77       3      39 ..       9      43 ..       7      67 .. 0.80
   2 ?    0.1   0.0      0.35   3.5e+02      69      91 ..     109     132 ..     107     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00077
  K_oxygenase  3 lDligiGiGpsnLsLailleevkkelkalflerqpef 39
                  D  +iG Gp+ L La ll+ +   l++++le++ +f
   EHU00409.1  9 ADCCIIGGGPAGLMLAYLLARAG--LQVVVLEKHADF 43
                 6899****************999..********9998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.35
  K_oxygenase  69 pfsFlnYlkek.grLykFlnletf 91 
                  ++ Fln+l ek  +++ F+ l++ 
   EHU00409.1 109 QWDFLNFLAEKsAQFSGFTLLKST 132
                  689******994599999977654 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00049      0.49       2      22 ..      19      39 ..      18      41 .. 0.95
   2 ?   -2.1   0.0       1.7   1.7e+03      51      94 ..      53      98 ..      47     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00049
                   HHHHHHHHHHHTTEEEEEEES CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEa 22
                   aGL+ A+ L++aG++V+vlE 
     EHU00409.1 19 AGLMLAYLLARAGLQVVVLEK 39
                   9*******************5 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
                   THHHHHHHHHTTCCCCEE.EESCCGCEEEEETTEECC.TTEECHHH CS
  Amino_oxidase 51 gnpllellkelgledsls.lpdpgapkrvlskggref.pgdlspvp 94
                   ++ +l+++++lgl d l  lp+  ++k   ++gg+e+ ++d+s++p
     EHU00409.1 53 HPFTLQIMHHLGLLDALLtLPHQRVEKLQAEMGGEEVtMADFSRLP 98
                   6678899999999999986676666666666666666755555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2915.43
//
Query:       EHU00410.1  [L=68]
Description: hypothetical protein CKS_2406 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 544.79
//
Query:       EHU00411.1  [L=48]
Description: hypothetical protein CKS_2403 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 443.68
//
Query:       EHU00412.1  [L=101]
Description: hypothetical protein CKS_2401 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-05   24.9   0.0      3e-05   24.6   0.0    1.1  1  CdiI_2    CdiI immunity protein


Domain annotation for each model (and alignments):
>> CdiI_2  CdiI immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.7e-09     3e-05       2      83 ..      16      96 ..      15      96 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.7e-09
      CdiI_2  2 ypeLeqLlggyFhQDydlegdsieeiledYvssespeevaelideieellassldeeleeaflaelgae.fdpeawgltaref 83
                yp +++ l++ F+   d++++ + e  ++Y+++      a+++ ei +ll+ s+deel++   ++l+++ f+pe wg t+r f
  EHU00412.1 16 YPVMREILTASFSCYHDDFDNAVGETAACYFDTN-VLSKADARNEIGSLLRISDDEELKTTS-EQLDCDhFRPEPWGETWRMF 96
                8899999999999999****************75.9999***************99888888.77777449**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 773.66
//
Query:       EHU00413.1  [L=50]
Description: isocitrate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-07   30.1   0.0    2.8e-07   30.0   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.5e-11   2.8e-07     305     348 .]       1      46 [.       1      46 [. 0.96

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.5e-11
                 TT-HHHHHHHHHHHHHHHHHTSCCHHHCTTS..TCCCHHHHHHHHH CS
      Iso_dh 305 lgleeaAdkiekAvekvleagivTkDlagea..akevstsefgdav 348
                 +++ eaAd i k++e++++a++vT+D+++ +  ak +++sefgd +
  EHU00413.1   1 MEWFEAADLIVKGMEGAIAAKTVTYDFERLMdgAKLLKCSEFGDVI 46 
                 789****************************99**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 418.09
//
Query:       EHU00414.1  [L=418]
Description: phage tail-like protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3528.56
//
Query:       EHU00415.1  [L=64]
Description: hypothetical protein CKS_2398 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 496.32
//
Query:       EHU00416.1  [L=361]
Description: Flp pilus assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-07   30.6   1.0      5e-07   29.1   1.0    1.6  1  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.0   2.8e-11     5e-07       4     254 ..      32     299 ..      30     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.8e-11
  Baseplate_J   4 yLdrlgelevgvtRkpAtkAsgtvtftgeagtvIpaGtrvstadglsfatted.titagqgsatvkvtaeeaGaagNvpagtsllldtaiagiqsvav 100
                   L++lg++ +gv++   t  s  v ft   g  Ip+G +v   ++ ++a+  d ++++g  +  + + a+ aG+ + vp+g++++++t ++    v+ 
   EHU00416.1  32 LLKQLGSI-YGVPQGMGTNTSVYVVFTAPPGFPIPKGFTVGD-GNNQYAVVRDaVTPTGGQTEPLYCLATSAGSWA-VPEGSVTQIITSVPKSYVVTC 126
                  5899**99.9*******************************9.888899999856666666666777777777765.9******************** PP

  Baseplate_J 101 antkvssgGadiEsdealreRillalqepptgGnkadYkewalevqgVtrakvlplwngpGt.Vkvvilldng.........glPtaellak...... 182
                  +n ++  +G d  + +++r+ ++++  +  + G  + +++  +ev+gV +  +  +++++G  V vv   d            +P+ ++l++      
   EHU00416.1 127 TNLTAGLPGLDDQTYSSYRAQVMQSGMKAVQ-GVPDYFRTLMQEVEGVQENLISYRQFSQGKwVAVVGGGD-PyevayaiykAIPDISMLTNdvsnps 222
                  *************************988777.777779999********9999999998888343333333.22333344444555555555666666 PP

  Baseplate_J 183 ....VqayiseglrPvtaevtvlaptekavnitat.lllaegtdseavkq.aveaaiqayfkeeakpggtivlsqiea 254
                       +++++  + P    +  + pt +++++ +t  + ++++++ + ++ av++ + +y+  +a  g+ i+  qi++
   EHU00416.1 223 gnpvDKKTVQIDVYPDSYQIPYVVPTSQTASVYITwNTASTNYVDPTGVSnAVQQPVVDYIEAIAV-GQPINALQIKE 299
                  666322222346689999999999999999999997777778888888877999999999999888.88888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3016.08
//
Query:       EHU00417.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00417.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00417.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00417.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00417.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00417.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00417.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00417.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00417.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00417.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00417.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00417.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00417.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00417.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00417.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00417.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00417.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00417.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2610.61
//
Query:       EHU00418.1  [L=115]
Description: hypothetical protein CKS_2394 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 868.42
//
Query:       EHU00419.1  [L=133]
Description: hypothetical protein CKS_2393 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1117.28
//
Query:       EHU00420.1  [L=334]
Description: hypothetical protein CKS_2392 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2872.91
//
Query:       EHU00421.1  [L=87]
Description: hypothetical protein CKS_2391 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.0   0.1      0.028   14.3   0.1    1.4  1  FTP       Fungalysin/Thermolysin Propeptide Motif


Domain annotation for each model (and alignments):
>> FTP  Fungalysin/Thermolysin Propeptide Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.6e-06     0.028      12      32 ..       8      28 ..       6      29 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-06
                -TS-EEEEEEEEETTEEEEEE CS
         FTP 12 anGttHvryqQtynGipVfgg 32
                +nG++ +++q t+ Gi+Vfg 
  EHU00421.1  8 PNGQSPFTFQATVGGIKVFGK 28
                59*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 812.27
//
Query:       EHU00422.1  [L=104]
Description: hypothetical protein CKS_2390 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 977.98
//
Query:       EHU00423.1  [L=617]
Description: hypothetical protein CKS_2389 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-23   82.9   1.6    1.4e-23   82.8   0.1    1.8  2  SLT              Transglycosylase SLT domain
     0.0054   17.3   1.3      0.022   15.4   0.0    2.7  3  Transglycosylas  Transglycosylase-like domain
  ------ inclusion threshold ------
      0.028   14.4   0.1      0.082   12.9   0.0    1.9  2  Phage_lysozyme2  Phage tail lysozyme
       0.03   13.6   0.0      0.061   12.6   0.0    1.5  1  SLT_2            Transglycosylase SLT domain
        7.4    6.9  12.9        1.6    9.0   1.0    4.1  5  WXG100           Proteins of 100 residues with WXG


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.1   7.7e+03      73      96 ..     259     285 ..     252     287 .. 0.66
   2 !   82.8   0.1   3.8e-27   1.4e-23       4     103 ..     445     541 ..     442     553 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
                 HHHHHHHHHTTTT...HHHHHHHHHHH CS
         SLT  73 akyLkslykqyng...slllalaAYNa 96 
                 a+ L ++++++ +   + l a  AYNa
  EHU00423.1 259 ANQLDQNMGGGTQqsyQDLSAKFAYNA 285
                 566666666666655555667778886 PP

  == domain 2  score: 82.8 bits;  conditional E-value: 3.8e-27
                 HHHHHHHTS-HHHHHHHHHHHHTT-TT-B-.TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHH CS
         SLT   4 ikaekkygvepsllaaiaqvESgfnpkAvs.ksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegtv 101
                 ++a k+ +++  l+ aiaq+ES++np A + +sga+GL+Q+mp tak++gl    + d+++dP+k++ a+ +yL++l+k+y+g++ ++l++YN G+  +
  EHU00423.1 445 EAANKTANLPNGLMSAIAQKESSWNPLALNkSSGAAGLFQFMPGTAKAYGL----EGDDVYDPNKSTVAAGRYLNDLNKRYKGDVAKMLTSYNGGRIDK 539
                 678888999999999***************7789****************9....9***************************************9776 PP

                 HH CS
         SLT 102 kk 103
                   
  EHU00423.1 540 DG 541
                 55 PP

>> Transglycosylas  Transglycosylase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.3   4.6e+03      42      66 ..     132     156 ..     123     162 .. 0.80
   2 !   15.4   0.0   6.2e-06     0.022       8      44 ..     459     496 ..     454     511 .. 0.86
   3 ?   -4.0   0.0         5   1.8e+04      57      71 ..     572     586 ..     571     587 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
                      TCCST.SCGGGS-HHHHHHHHHHHH CS
  Transglycosylas  42 ggekyapsaaqAsreqQiavAekvl 66 
                      + e+y++s        Q+++A++v+
       EHU00423.1 132 ATEQYKSSQGLGVSTGQMQAAQNVY 156
                      5678888888888888999999987 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.2e-06
                      HHHHHHHHSS-T.T-TTSSSEBTTTTBEHHHHHHTTCC CS
  Transglycosylas   8 daiAqcEsggnw.aintgnGyyGglqfsqstWeavgge 44 
                       aiAq Es+ n  a n+++G++G +qf + t +a+g e
       EHU00423.1 459 SAIAQKESSWNPlALNKSSGAAGLFQFMPGTAKAYGLE 496
                      68*******9977********************99955 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5
                      HHHHHHHHHHHHHCG CS
  Transglycosylas  57 qQiavAekvlatqGa 71 
                       Q ++A+ vl+++G 
       EHU00423.1 572 RQLEAANTVLSSGGK 586
                      589999999999885 PP

>> Phage_lysozyme2  Phage tail lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.7   6.1e+03      73      89 ..     252     268 ..     188     293 .. 0.57
   2 ?   12.9   0.0   2.3e-05     0.082      25      62 ..     460     493 ..     434     534 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
  Phage_lysozyme2  73 wkdlevqlefllkelkn 89 
                       k  ++q + l++ + +
       EHU00423.1 252 SKQYQAQANQLDQNMGG 268
                      23333333333333333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.3e-05
  Phage_lysozyme2  25 GniqqEsgfnpgavesalskggggyGlvQWtgsrrtal 62 
                      +  q+Es+ np a +    k++g+ Gl+Q+ +++ +a+
       EHU00423.1 460 AIAQKESSWNPLALN----KSSGAAGLFQFMPGTAKAY 493
                      45688**********....9***********9988654 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.061     143     175 ..     468     499 ..     427     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
       SLT_2 143 vdpeelkGSwaGamGltQFmPssylkyAvDfdg 175
                 ++p +l+ S  Ga Gl QFmP ++ +y+ ++d+
  EHU00423.1 468 WNPLALNKS-SGAAGLFQFMPGTAKAYGLEGDD 499
                 555555544.6*****************98875 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.6   9.2e+03      65      76 ..      19      30 ..      15      32 .. 0.50
   2 ?    3.1   0.0     0.032   1.2e+02      47      81 ..      66     100 ..      63     102 .. 0.92
   3 ?   -2.6   0.1       1.9   6.8e+03       6      30 ..     146     170 ..     136     176 .. 0.55
   4 ?    9.0   1.0   0.00044       1.6      12      64 ..     237     289 ..     235     299 .. 0.90
   5 ?    0.2   0.1      0.25   9.1e+02       6      42 ..     433     469 ..     432     480 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.6
                HHHHHHHHHHHH CS
      WXG100 65 daLeeisealkq 76
                ++L+ei+++ k+
  EHU00423.1 19 QQLNEIADKFKN 30
                445555554443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  47 dafqaefeewkqaaqklvdaLeeisealkqaanaf 81 
                 ++f++++++++++aq   + ++ i+++l +++n++
  EHU00423.1  66 TSFDKFLKNLNKEAQGTLKTFTLINKTLGATTNTL 100
                 789***************************99986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   6 peelrqaaarfqkqaeeledelqrl 30 
                 + ++++a + +++  +  +++ q+l
  EHU00423.1 146 TGQMQAAQNVYGSRFSGTSTIMQAL 170
                 4555555555554444444444444 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00044
                 HHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHH CS
      WXG100  12 aaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklv 64 
                 +a+++ +++++l ++ ++ +a+ ++l ++  G +++++q+  +++  +a+++ 
  EHU00423.1 237 TANQLLANSDRLPELSKQYQAQANQLDQNMGGGTQQSYQDLSAKFAYNADRIG 289
                 7889999999*******************************999999988875 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCT CS
      WXG100   6 peelrqaaarfqkqaeeledelqrlkaevdalqsgWs 42 
                 p+++ +  ++f ++a++  ++ + l++ +++ +s+W+
  EHU00423.1 433 PDAMKANVQTFVEAANKTANLPNGLMSAIAQKESSWN 469
                 6777777888888888888888888888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.36
# Mc/sec: 5105.79
//
Query:       EHU00424.1  [L=205]
Description: hypothetical protein CKS_2388 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1510.05
//
Query:       EHU00425.1  [L=146]
Description: hypothetical protein CKS_2387 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   13.4   0.0      0.052   12.9   0.0    1.1  1  CsoS2_M   Carboxysome shell peptide mid-region


Domain annotation for each model (and alignments):
>> CsoS2_M  Carboxysome shell peptide mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-06     0.052     235     296 ..      78     142 ..      64     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-06
     CsoS2_M 235 tGdqYlgseskeegrapekves.setlrgntvtGtevgrsekvt..GdEaGsCkavtGdeyvgae 296
                  G qY ++ + ++  + +kv s s+t  + +v  t++++ + ++  G E+G+  ++tG+ y+++e
  EHU00425.1  78 LGAQYKTQWEANTAIGDAKVYSdSSTFGDFEVMNTAITNVQDMSfaGGEPGVAITITGTYYINSE 142
                 57888888888888888888652566777788888887776653338899999999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1167.50
//
Query:       EHU00426.1  [L=442]
Description: hypothetical protein CKS_2386 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3222.43
//
Query:       EHU00427.1  [L=315]
Description: hypothetical protein CKS_2385 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2439.95
//
Query:       EHU00428.1  [L=142]
Description: hypothetical protein CKS_2384 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1096.71
//
Query:       EHU00429.1  [L=146]
Description: hypothetical protein CKS_2383 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1214.49
//
Query:       EHU00430.1  [L=156]
Description: hypothetical protein CKS_2382 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.09   13.4   0.0       0.23   12.1   0.0    1.7  1  TIG_2     TIG domain found in plexin


Domain annotation for each model (and alignments):
>> TIG_2  TIG domain found in plexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05      0.23      56      88 ..      11      43 ..       5      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
       TIG_2 56 qemqysYegssgelevelsVvwngnfriDnpan 88
                q+++++Y+ ++++ + ++++   g+++iDn+++
  EHU00430.1 11 QAHTFNYKLPEKSQSFGVTIPAGGQHMIDNQSD 43
                679***************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1307.87
//
Query:       EHU00431.1  [L=342]
Description: hypothetical protein CKS_2381 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-06   26.8   0.1    4.6e-06   26.2   0.1    1.2  1  DUF2184   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2184  Uncharacterized protein conserved in bacteria (DUF2184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   2.6e-10   4.6e-06      29     198 ..      87     264 ..      70     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.6e-10
     DUF2184  29 ligasygytvqElraaqalGrsLdtrkadaarraadkkinkiayvGdekkgltGLlnspgvtvttaaagatgstkWadkTadeiladinaaltavwtas 127
                 +i+   +y+  +  aa + G sL++  + a r+ +++++  +  +G ++ + +G+ nsp+ t+++  ++ +g+  +++  + e+++++ +++++ +t  
  EHU00431.1  87 RISTRSQYSYLDTDAASRWGYSLNSGLQLANRQGHAQQLRNMLIYGVKASNNEGIANSPNATTVNLGSDSQGNDSYTTWDSGEMAKFVLGLIADQKTRM 185
                 56667799999*******************************************************99999**********************888887 PP

     DUF2184 128 gy.veapdtlllppsqya.dLatrrvsdtg........nktilsflkenniatkqkgrpLtiekvkelegagtggkdrmva 198
                 +   +a +t++l p++++ +L  + v + +         +t+ + +k+  ia   +g ++ + +   l g+g+gg+d +++
  EHU00431.1 186 MLlGQALTTVVLCPQRFMkALEWTGVVELTsyqrpgggTETVGTMIKN--IANGASGDDVIFCQDDTLIGKGAGGTDLIIV 264
                 775444455555555554156555444333355555658888888864..5555678888888888899999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2734.15
//
Query:       EHU00432.1  [L=205]
Description: hypothetical protein CKS_2380 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1539.70
//
Query:       EHU00433.1  [L=401]
Description: nudix hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00023   21.2   0.0    0.00048   20.2   0.0    1.5  1  DUF2213          Uncharacterized protein conserved in bacteri
     0.0023   17.3  18.1     0.0031   16.9  18.1    1.1  1  BUD22            BUD22
  ------ inclusion threshold ------
      0.028   13.2   8.9      0.038   12.8   8.9    1.2  1  Tim54            Inner membrane protein import complex subuni
      0.055   13.4  13.9      0.081   12.9  13.9    1.3  1  Spore_coat_CotO  Spore coat protein CotO
      0.056   13.1  26.6       0.11   12.2  26.6    1.5  1  CAF-1_p150       Chromatin assembly factor 1 complex p150 sub
      0.072   12.9  14.8       0.12   12.2  14.8    1.3  1  RR_TM4-6         Ryanodine Receptor TM 4-6
       0.12   10.8  17.8       0.16   10.4  17.8    1.1  1  Borrelia_P83     Borrelia P83/100 protein
       0.15   12.2   4.0       0.23   11.6   4.0    1.3  1  DDHD             DDHD domain
       0.19   11.3  19.8       0.34   10.5  19.8    1.4  1  DDRGK            DDRGK domain
       0.22   11.9  10.0        0.4   11.1  10.0    1.3  1  CCDC53           Subunit CCDC53 of WASH complex
       0.28   10.4   5.6       0.35   10.0   5.6    1.1  1  Zip              ZIP Zinc transporter
        0.4    9.4   8.7       0.53    9.0   8.7    1.2  1  SAPS             SIT4 phosphatase-associated protein
        0.4   10.0   4.3       0.56    9.5   4.3    1.2  1  DHHW             DHHW protein
        0.4   11.1  10.8       0.93    9.9  10.8    1.7  1  RNA_pol_Rpc4     RNA polymerase III RPC4
       0.43    8.8   2.4         14    3.8   2.8    2.2  2  Silic_transp     Silicon transporter
       0.51   10.1  12.8       0.79    9.5  12.8    1.2  1  FGF-BP1          FGF binding protein 1 (FGF-BP1)
       0.56    9.6  14.3       0.95    8.8  14.3    1.3  1  DUF4746          Domain of unknown function (DUF4746)
       0.67   10.0  17.8        1.2    9.1  17.8    1.3  1  DUF2514          Protein of unknown function (DUF2514)
        0.7    8.7  19.7       0.97    8.3  19.7    1.2  1  NARP1            NMDA receptor-regulated protein 1
       0.73    9.7  19.0        1.3    8.9  19.0    1.4  1  RPN2_C           26S proteasome regulatory subunit RPN2 C-ter
        0.9    8.7   3.3        1.4    8.1   3.3    1.2  1  DUF1943          Domain of unknown function (DUF1943)
       0.97    8.4   9.2        1.3    8.0   9.2    1.1  1  SLC12            Solute carrier family 12
          1    7.6  16.1        1.3    7.3  16.1    1.1  1  CDC45            CDC45-like protein
        1.1    8.6  10.7        1.4    8.2  10.7    1.3  1  DUF4407          Domain of unknown function (DUF4407)
        1.1    9.6  18.7        1.8    8.8  18.7    1.4  1  Vfa1             AAA-ATPase Vps4-associated protein 1
        1.3    8.5  11.4        2.1    7.8  11.4    1.4  1  Sec62            Translocation protein Sec62
        1.4    8.7  11.2        2.9    7.7  11.2    1.6  1  Coilin_N         Coilin N-terminus
        1.5    8.9   9.7        2.3    8.3   9.7    1.3  1  TP53IP5          Cellular tumour antigen p53-inducible 5
        1.7    8.3  17.8         15    5.1  17.9    2.0  2  DUF5523          Family of unknown function (DUF5523)
        2.3    7.7  17.3         12    5.4  17.6    2.0  2  PPP4R2           PPP4R2
        2.6    6.6  11.7        3.4    6.1  11.7    1.1  1  DUF2151          Cell cycle and development regulator
        2.9    6.6   6.8        4.3    6.0   6.8    1.2  1  ALMT             Aluminium activated malate transporter
        3.2    6.5  12.9        4.1    6.1  12.9    1.1  1  NPR3             Nitrogen Permease regulator of amino acid tr
        3.3    6.7  15.3        4.4    6.3  15.3    1.1  1  LAP1C            Lamina-associated polypeptide 1C (LAP1C)
        3.5    7.6   9.8        5.1    7.0   9.8    1.3  1  FAM60A           Protein Family FAM60A
        3.7    6.4   6.3        4.6    6.1   6.3    1.2  1  PA26             PA26 p53-induced protein (sestrin)
        4.2    6.0  13.3        5.6    5.6  13.3    1.1  1  Presenilin       Presenilin
        4.3    5.7  10.4        6.2    5.2  10.4    1.2  1  RRN3             RNA polymerase I specific transcription init
        5.4    6.2  12.6        3.8    6.7  11.1    1.5  1  PPL5             Prim-pol family 5
        6.4    5.7   8.9        9.9    5.0   8.9    1.2  1  DUF913           Domain of Unknown Function (DUF913)
        6.7    6.9  12.3         10    6.3  12.3    1.2  1  MMR1             Mitochondrial Myo2 receptor-related protein


Domain annotation for each model (and alignments):
>> DUF2213  Uncharacterized protein conserved in bacteria (DUF2213)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-06   0.00048      41     156 ..      22     138 ..      11     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.1e-06
     DUF2213  41 rvlrdpdelfkkealasfegkpvtdeHpeeev.taenwkelavGtvgrdvrfegeylvadllitdaeaiaaiesgklrelSagYeadldmtpg...eyd 135
                 +v+rdp+   +++ l+ ++g+pv+ +Hp+++v t ++ +e +vG+v     + g+ + a   i+ ++++++i +++   +S + ++ ++  +g   ++d
  EHU00433.1  22 HVWRDPNLYLNDAFLQRCNGLPVITNHPDKAVlTEQDFTERIVGSV-MLPYIRGDEVWAVCRIYIRDIVEQIVKET---VSTSPSVVFNNASGnveVMD 116
                 689999999999****************9977255666********.88999999999999999999*****9999...56555555555555223556 PP

     DUF2213 136 G.ekydavqrnirgnHvAlVee 156
                 G +++ ++   +  +H+AlV e
  EHU00433.1 117 GdTNFLIEGVPFLLDHIALVTE 138
                 6245667778899999999976 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  18.1   7.2e-06    0.0031     119     205 ..     191     286 ..     182     356 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.2e-06
       BUD22 119 tvkevveeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeee.eeesdkeeesedsedeekeeseddeeeeeededdedaee............ 204
                 t++ ++++ ++++k +++ e+++kk+++ek++++++kk+++k++++e eee++k+++++++e+ +++++e+++ ++++d+++    +            
  EHU00433.1 191 TISARMDSLESGIKARADAEEAEKKEAKEKADQEEQKKAEEKAKADEaEEEQRKADQAKADEE-KAKAEEEEKAKSDSDMTE----Arvkadsayvacg 284
                 788899999999999999998444444444444444443333333332122222222222222.122222222222222222....1223344555555 PP

       BUD22 205 .d 205
                  +
  EHU00433.1 285 kQ 286
                 40 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   8.9   8.6e-05     0.038     194     309 ..     213     329 ..     196     368 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.6e-05
       Tim54 194 eepeeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasaelppeiPell..qpvlviplphllGflntp 290
                 e++e++e++++ee++++e++++++e+eee+++++++k++e+++++eeeek+k+ + +++   ++d a     ++ P+ +  + +l  +   l+G+ +  
  EHU00433.1 213 EKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEARVKADSAYVACGKQAPTPFsgEKALDYRKRVLMGMQKHS 311
                 222233333333333333333333333444444444555555555555555555555555555555555555566666633566666667777877776 PP

       Tim54 291 iriyrfltrRkladevgre 309
                 ++  +  + R++ad+ + +
  EHU00433.1 312 EKH-KDVNIRAIADSATLS 329
                 663.446666666666555 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  13.9   0.00019     0.081      31     101 ..     208     277 ..     169     320 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00019
  Spore_coat_CotO  31 sfkeekkqaaakekkdeaeekkpekaveeeveqekkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqe 101
                       ++e++k++a++++++e ++k++eka ++e  +e++++a++ + +ee++kaeeeek +      e+  k +
       EHU00433.1 208 DAEEAEKKEAKEKADQEEQKKAEEKAKADEA-EEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEARVKAD 277
                      3344444555555555555555555555555.555666777777777777777666666655555544443 PP

>> CAF-1_p150  Chromatin assembly factor 1 complex p150 subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  26.6   0.00025      0.11      58     131 ..     204     282 ..     190     298 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00025
  CAF-1_p150  58 rkkeeekekkekerrekkekdekekaeklrlkeekrkeklealeak.leekrkkeeekrlkeee....krikaekaeit 131
                 + + +  e + ke +ek +++e+ kae     +e  +e+  a +ak  eek k eee + k +      r+ka+ a ++
  EHU00433.1 204 KARADAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKaDEEKAKAEEEEKAKSDSdmteARVKADSAYVA 282
                 3444445555556666666666666654443344444444445566258899999999999887677799***999775 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  14.8   0.00027      0.12      93     158 ..     201     265 ..     153     283 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00027
                 XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  93 eeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaea 158
                 + +++++++ee e+ +ea+ekad+e+++k+e++ + +e+e+e+++ +++k+ ++kak++++e+a++
  EHU00433.1 201 SGIKARADAEEAEK-KEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKS 265
                 33444444444443.333356665555555544443333333333333333333333333333222 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  17.8   0.00036      0.16     191     262 ..     200     271 ..     154     352 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
  Borrelia_P83 191 ekdvelrrdivDlkeresqedakraqvlkeeldkkqkdadkakkkadtaednadkqrkevreklqeaknlpe 262
                   e++++ r d  +   +e++e+a ++++ k e + k+ +a++ ++kad+a+++ +k + e +ek + + ++ e
    EHU00433.1 200 ESGIKARADAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTE 271
                   333333333333355555555555555555555556666666666666665555555555555555322221 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.0   0.00053      0.23     120     170 ..     210     273 ..     152     367 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00053
        DDHD 120 lelaeeesaslaessksherasesskasqeskaaesstasssaksskaee.............k 170
                  e +++e++++a+++++++++++++ ++ e+++++  +a+ ++++ kaee             +
  EHU00433.1 210 EEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEeekaksdsdmteaR 273
                 1112222222222222222222222222222222222222222211111122233333333330 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  19.8   0.00078      0.34       9      78 ..     210     265 ..     201     335 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00078
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DDRGK   9 kkleeKekkrqqreaeeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyekl 78 
                 +  e+Ke+k ++ + e+++ ee+ k +e +ee+rk +              ++k+ eek++ e+ee  k 
  EHU00433.1 210 EEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKAD--------------QAKADEEKAKAEEEEKAKS 265
                 3445555555555556666666666555554444433..............3333333333332222221 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.0    0.0009       0.4      26     122 ..     185     280 ..     173     283 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0009
      CCDC53  26 vekrlqrleitlalLEakLsSipgleeveaeaaeastsddnaarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeqeesesk.nvltvkdDpry 122
                 v+k  +++ +++  LE+ +++  ++ee+e+++a++++++  +++k++++++++ ea++++ +a++a++ ee+a+ e+ee+++s+s+   ++vk D  y
  EHU00433.1 185 VNKGFETISARMDSLESGIKARADAEEAEKKEAKEKADQ--EEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDmTEARVKADSAY 280
                 566677888888888988888778887777755444443..444444444444444444445555555555555555555555544566677777666 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.6   0.00081      0.35      97     172 ..     201     307 ..     167     332 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
         Zip  97 tmivek..ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas...................... 171
                 + i+++   +++++k+ k++ +++++++a++++++d+ ee+++k d+++ ++++a+ +ee+++++ +   ++  +a+                      
  EHU00433.1 201 SGIKARadAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEARVKADsayvacgkqaptpfsgekaldy 299
                 444444656677788888888888888888889999999999988876666666665555555554444444444437777777777777777777777 PP

         Zip 172 .......e 172
                         
  EHU00433.1 300 rkrvlmgM 307
                 77777763 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.7    0.0012      0.53     251     325 ..     197     270 ..     134     303 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
        SAPS 251 Devrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseeded 325
                 D + ++++++ ++e ea +   +e++++e++++++ + k ++ ++e+ k+++++++e++++++++++ +s++d++
  EHU00433.1 197 DSLESGIKARADAE-EAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMT 270
                 22222222222111.111111111111111111111112222222222222222222222222222222222222 PP

>> DHHW  DHHW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.3    0.0013      0.56      37     136 ..     187     287 ..     172     353 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0013
        DHHW  37 dafkslnarlksl.yGirkddvkgevtkgvekddadeekeeldvienisseasteasdaakessaesdsseaaskeavekeddskkdgeilnavlvl.g 133
                  +f +++ar+ sl  Gi+      e+ k++ k++ad+ +e+++  e+ +++ + e +  a + +a+ ++ +a+ +e+++ + d ++     ++ +v+ g
  EHU00433.1 187 KGFETISARMDSLeSGIKARADAEEAEKKEAKEKADQ-EEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEARVKADSAYVAcG 284
                 689********98458887555555666655555555.5555666667777777777777777777788888777776666666666666666666424 PP

        DHHW 134 dsa 136
                 ++a
  EHU00433.1 285 KQA 287
                 555 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.8    0.0021      0.93      32      79 ..     214     261 ..     170     290 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0021
  RNA_pol_Rpc4  32 esqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklk 79 
                   +++++eka++ee++kae++ +a+++e+++ k++++k +++k+ka++ +
    EHU00433.1 214 KKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEE 261
                   111111222222222222222222222222222222222222221111 PP

>> Silic_transp  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.086        38     194     231 ..      30      67 ..      21      72 .. 0.91
   2 ?    3.8   2.8     0.032        14     471     507 ..     209     246 ..     120     284 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.086
  Silic_transp 194 yliqnilalvaGkpvktneeprsalqalffwgrvllsl 231
                   yl   +l+   G pv tn + ++ l+   f  r++ s+
    EHU00433.1  30 YLNDAFLQRCNGLPVITNHPDKAVLTEQDFTERIVGSV 67 
                   899999***************************99887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.032
  Silic_transp 471 vldekagskeekakfeeakvmetka.llklkkeqeald 507
                   + + +  + +eka  ee k  e ka ++++++eq + d
    EHU00433.1 209 AEEAEKKEAKEKADQEEQKKAEEKAkADEAEEEQRKAD 246
                   33322233333333333222222221223333332222 PP

>> FGF-BP1  FGF binding protein 1 (FGF-BP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  12.8    0.0018      0.79     130     206 ..     201     274 ..     166     285 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0018
     FGF-BP1 130 ahlklvasslasskkeekekekesskekskakaaasaeekskkkkkaskrkkketkkpaekepecaeedpdleeqek 206
                 + +k  a + +++kke kek+++++++k+++ka+a    ++++++++++++k+ ++k++ +e+e+a++d d+ e++ 
  EHU00433.1 201 SGIKARADAEEAEKKEAKEKADQEEQKKAEEKAKAD---EAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEARV 274
                 333333333333333333333333333333222222...22333333333333344444444444555777666654 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  14.3    0.0022      0.95      67     135 ..     205     269 ..     164     287 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0022
     DUF4746  67 veeeeelveevsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveeeeeeeeeeeeee 135
                 ++    +  e+++++e++ek+++e++k+++++a+ +  e++++++++++++ee+  +eeee+++++++ 
  EHU00433.1 205 AR----ADAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDM 269
                 33....333444444444444444444443333322222222222233333333333322222222222 PP

>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  17.8    0.0028       1.2      27     117 ..     201     287 ..     174     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0028
     DUF2514  27 aewekrwadrdaedsqakviaeeaaReeeqrrkaaaekavkdaqekaaaAradavgaaaaadrLrqeaakLaaaksavaadsaaaargkaa 117
                  + ++r+++++ae+++ak  a++++ ++ +++++a e  +++ q+ka++A+ad  +a+a+ +   +  +++  +++ v+adsa +a gk a
  EHU00433.1 201 SGIKARADAEEAEKKEAKEKADQEEQKKAEEKAKADE--AEEEQRKADQAKADEEKAKAEEEEKAKSDSDM--TEARVKADSAYVACGKQA 287
                 5667778888888888888888888888888888888..8899******************9999999999..666789*********988 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  19.7    0.0022      0.97     394     460 ..     210     270 ..     196     318 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0022
                 G---HHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......-------------S-S CS
       NARP1 394 eeekeeaksaelseaerkklrkkakkaekkaekeeaekaekekekkaaekkakkedeeakkededpl 460
                 ee+++++++++ +++e+kk+++kak +e+++e+ +a++a      ka e+kak+e+ee+ k d+d +
  EHU00433.1 210 EEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQA------KADEEKAKAEEEEKAKSDSDMT 270
                 233333344455555555555555555444444444433......3445556666666666666654 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  19.0     0.003       1.3      56     112 ..     209     266 ..     186     292 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.003
                 HHHHHHHHHG......----------------------------------SS----SSEEEE CS
      RPN2_C  56 arakkkekek.....eeeekeedkmdvdeekeekekkekekkekekeeekkkkekektfekl 112
                 a +++k+++k     ee++k+e+k + de++ee++k ++ k+++    ek k+e+e++ +  
  EHU00433.1 209 AEEAEKKEAKekadqEEQKKAEEKAKADEAEEEQRKADQAKADE----EKAKAEEEEKAKSD 266
                 33222222221122133444444444444333333333333333....33333333333333 PP

>> DUF1943  Domain of unknown function (DUF1943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.3    0.0031       1.4      38     130 ..     174     260 ..     166     301 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0031
     DUF1943  38 mlnltadlfG.rsvnlfEvgaraegleelleklf....gpkgffsdkllkkksekekkeeskrrkrsvqkrkqdikeeikkkleklakklkidkeepe 130
                  +++  d++G  +  +  ++ar+++le  +++       +k           +e ++k +++ +k++ +k+k d+ ee ++k ++   + ++ k+e+e
  EHU00433.1 174 VAKVVGDALGgVNKGFETISARMDSLESGIKARAdaeeAEK-----------KEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEE 260
                 555555555559999999************77774333333...........3333333333333333333344555555555554443333333333 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.2     0.003       1.3     145     243 ..     209     316 ..     182     348 .. 0.39

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.003
       SLC12 145 aeesekeeeekkkakkkklleekskekeekekleekdsnlslseekkeeekekkkekkkkkekkeklkkkekslllkeaskee................ 227
                 aee+ek+e+++k+++++++++e++ + +e+e+ ++k ++++ +eek  +++e++k+k++++ ++ + k ++++ +                        
  EHU00433.1 209 AEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKA-KAEEEEKAKSDSDMTEARVK-ADSAYV-------Acgkqaptpfsgekald 298
                 11111111111212222222222222222222222222222222222.11111111111111122222.111111.......01222234556666666 PP

       SLC12 228 ..kevleeitqfqkkqkk 243
                   k+vl  +++ ++k+k+
  EHU00433.1 299 yrKRVLMGMQKHSEKHKD 316
                 666666666666655554 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  16.1    0.0029       1.3     128     196 ..     208     294 ..     185     353 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0029
       CDC45 128 eeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrk..sksdeeee..sddddersrkrrrse..............p 196
                 + ee+++++ +e+ ++++++++ee+ + de +ee+++ ++ k ++  +k++eee+  sd+d +++r +  s               +
  EHU00433.1 208 DAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEekAKAEEEEKakSDSDMTEARVKADSAyvacgkqaptpfsgE 294
                 222222111111111111111111111111111111111111111011111122221333333333333333555555555555442 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.7    0.0032       1.4     134     218 ..     192     269 ..     163     363 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0032
     DUF4407 134 elaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrae 218
                   a++++  + ++a  da ea+ ++++++a++e + +        + k ++a+e ++++d+a+a+ +++ka+  ++++ +++ + 
  EHU00433.1 192 ISARMDSLESGIKARADAEEAEKKEAKEKADQEEQKKAE-----EKAKADEAEEEQRKADQAKADEEKAKAE--EEEKAKSDSDM 269
                 344444444455555555555555555555555443222.....2334455555555555555555555555..33333322222 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  18.7    0.0042       1.8      67     131 ..     209     273 ..     188     325 .. 0.42

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0042
        Vfa1  67 eleeeiekvkkeyeekqkkkkekekkkkekd.kkdkdkkkekekdkkkekekeeekkkelkkaeee 131
                 + e e ++ k++ +++++kk+e+++k +e++ ++ k+++ + +++k+k +e ee++k++ + +e++
  EHU00433.1 209 AEEAEKKEAKEKADQEEQKKAEEKAKADEAEeEQRKADQAKADEEKAKAEE-EEKAKSDSDMTEAR 273
                 222233333333333333333222222222211111111111111111111.22222222222222 PP

>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.4    0.0049       2.1      14      71 ..     212     272 ..     198     336 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0049
       Sec62  14 alksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkee...k 71 
                 a+k+e+++k+++++++k +e+ k+++ae+++++  +++   + +k +e+ek+k++++    
  EHU00433.1 212 AEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDmteA 272
                 1222222222222222222222222222222222222222222222222222221112220 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.2    0.0066       2.9      78     135 ..     197     255 ..     145     276 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0066
    Coilin_N  78 egsetkleaqesede.dsresasksasttkqkkkkKrekkqeeqdeqkasqaakdkkkk 135
                 +++e++ +a +  +e +++e ++k ++++++k ++K + ++ e+++ ka+qa++d++k 
  EHU00433.1 197 DSLESGIKARADAEEaEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKA 255
                 44444444443322202222222222222222233333333333333334444333333 PP

>> TP53IP5  Cellular tumour antigen p53-inducible 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.7    0.0053       2.3      67     146 ..     208     268 ..     178     328 .. 0.42

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0053
     TP53IP5  67 kqnneelqearalekkleskklestkepkelkskewkeeskvrnkakgspaavpkkeeqaeaevpktsrgeglntkaqkk 146
                   ++ e +ea+ ++++ e+kk+e + ++ e+++     e+              +k +qa+a+ +k++++e+ ++k+ + 
  EHU00433.1 208 DAEEAEKKEAKEKADQEEQKKAEEKAKADEAEE-----EQ--------------RKADQAKADEEKAKAEEEEKAKSDSD 268
                 222222222222222222222222222222222.....22..............22222222222222222222222111 PP

>> DUF5523  Family of unknown function (DUF5523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  17.9     0.035        15      70     137 ..     208     271 ..     189     286 .. 0.49
   2 ?    0.5   0.0      0.92     4e+02      16      47 ..     338     369 ..     328     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.035
     DUF5523  70 dpepeeseekkkkkekeekeeeeeegeeeeeeeeeeeeeeeekdeeellvkkeeeeflldqtaedlle 137
                 d+e++e++e k+k  +ee+++ ee+ + +e eee+++ ++++ dee+  +k eeee    ++++d++e
  EHU00433.1 208 DAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEK--AKAEEEEKA--KSDSDMTE 271
                 44444433333333333333333333333333333333344444444..333333333..23455554 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.92
     DUF5523  16 esdkeeekeekedesklssrvkfkdaakkvks 47 
                 e++k+ e+e++++  +l++rv++ +a +++++
  EHU00433.1 338 EARKSIENEMNNTLGQLHQRVRMDEAGRRITE 369
                 55667778888888************999874 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.9   8.3e+02      38      73 ..      79     115 ..      74     144 .. 0.80
   2 ?    5.4  17.6     0.028        12     205     283 ..     196     264 ..     146     278 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
      PPP4R2  38 sslkslfrekLenviehftetiPe.eeipalPNVeif 73 
                    + ++r++ e+++++ + t+P+ +   a  NVe++
  EHU00433.1  79 AVCRIYIRDIVEQIVKETVSTSPSvVFNNASGNVEVM 115
                 555679999**************94445556788876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.028
      PPP4R2 205 idsimsvnlgfedeeekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeee 283
                 +ds+ s + +  d+ee e++++++           + ++e++k eek + +e++ee++ +++ ++d+e+++ +eee+ +
  EHU00433.1 196 MDSLESGIKARADAEEAEKKEAKE----------KADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAK 264
                 344433334444444444422221..........122222333333333333333333333333333333333332222 PP

>> DUF2151  Cell cycle and development regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  11.7    0.0078       3.4     561     628 ..     208     292 ..     190     359 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0078
     DUF2151 561 ekeeedkkkvkrkfsdkedk.tekksakeeseksdeesseskkeeeaeresvkeaev.dspesppakll................p 628
                 + ee++kk +k+k  ++e+k +e+k + +e+e+ ++++ ++k++ee+++++++e+   ds + ++a++                 +
  EHU00433.1 208 DAEEAEKKEAKEKADQEEQKkAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKsDSDM-TEARVKadsayvacgkqaptpfS 292
                 33333455555444444444044444444555544333344444444443333333313333.33333344444444444444330 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.8    0.0099       4.3     333     419 ..     185     273 ..     164     291 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0099
        ALMT 333 vkvaaeeLqskldsks.kLlvnsekweaakkkekaeevee.kkeeekeseskkeeaeaveeaeseseksllkeskrslklskkesapae 419
                 v+++ e++ +++ds    +   ++ +ea+kk++k+++ +e +k+ e+++++++ e+e++++ ++++++++ k++++++ +s + +++a+
  EHU00433.1 185 VNKGFETISARMDSLEsGIKARADAEEAEKKEAKEKADQEeQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEAR 273
                 55555555555544330222222222222222222222210122222222222222333333333333333333333333333333333 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.9    0.0094       4.1      52     130 ..     211     270 ..     186     319 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0094
        NPR3  52 kkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesekeeeekedkkknlt 130
                 +++k++ +++                     +ee+k+ +e+++++e+e+++++ ++ ++d+e++++eeeek ++++++t
  EHU00433.1 211 EAEKKEAKEKAD-------------------QEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMT 270
                 111111111111...................111112222222222222222222233333333334444444444444 PP

>> LAP1C  Lamina-associated polypeptide 1C (LAP1C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.3      0.01       4.4      36     190 ..     195     344 ..     171     363 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
                 XXX................XXXXXXXXXXXXXX..XXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
       LAP1C  36 kkdhqevetigsesadtedkseseqevnlseepkdetEeedsessqsgeeghklsseslgeekldsedsvsssdktgradaqleessaalseeasdrta 134
                 + d  e  ++++++a++ +k e +++++++e++  ++Ee+ +    + ee+ k +  ++ eek ++e++ + + ++  ++a+++ +sa ++  ++  t 
  EHU00433.1 195 RMDSLESGIKARADAEEAEKKEAKEKADQEEQK--KAEEKAKADEAE-EEQRKADQAKADEEKAKAEEEEKAKSDSDMTEARVKADSAYVACGKQAPTP 290
                 555555666666667777777776666666655..444333322222.333334444444444444444444444444555555555555555545666 PP

                 XXXXXXX......XXXXXXXXXXXXXXXXXXXXX..XXXX..XXXXXXXXXXXXXX CS
       LAP1C 135 asqepsaadsqeaqssghskaeqeeqdtlrrtrllvpeaeshqqetelleeskesa 190
                  s e+   d ++    g++k++++++d+ +r  ++ + + s  +e+   e +k+  
  EHU00433.1 291 FSGEKAL-DYRKRVLMGMQKHSEKHKDVNIR-AIADSATLSVLEEAIYGEARKSIE 344
                 6666666.88888888999999889999999.444445555556665555555533 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.8     0.012       5.1      86     156 ..     204     300 ..     186     351 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.012
      FAM60A  86 kslaklkkkekkesskkieekfekklkkkkklkkt...kakasdasssereaspassdsasedsdesedeeek........................k 156
                 k  a++ + ekke+++k +++ +kk+++k k+ ++   ++ka +a+ +e++a+++++++a++dsd +e++  k                        +
  EHU00433.1 204 KARADAEEAEKKEAKEKADQEEQKKAEEKAKADEAeeeQRKADQAKADEEKAKAEEEEKAKSDSDMTEARV-KadsayvacgkqaptpfsgekaldyR 300
                 33333333322222222222222222222211111000111111222222222222222222222222222.13444455555555555555555542 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.3      0.01       4.6     174     256 ..     202     271 ..     168     372 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.01
        PA26 174 glepeldlesskklksasasanekedsseeeeeelerkaaaeaeaevealmermkklqeeedeeeeaseeelserfekeeses 256
                 g++ ++d e+ +k +++            e+ ++ e+k+a+e+++  ea  e+ k+ q ++dee++  eee +++ +++ + +
  EHU00433.1 202 GIKARADAEEAEKKEAK------------EKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMT-E 271
                 33333333333222222............2222222222222222222222222222222222222222222222211111.1 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  13.3     0.013       5.6     233     292 ..     210     267 ..     188     318 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
  Presenilin 233 aeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeessee 292
                 +e+e++e++ek+++e++++ +e+++ +e++e+++++++ ++  +ee+++ae++++++s++
  EHU00433.1 210 EEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKA--DEEKAKAEEEEKAKSDS 267
                 11111111111111111111111111111111111111111..11111111111111111 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  10.4     0.014       6.2     215     273 ..     207     264 ..     160     295 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
        RRN3 215 veledlddeedeeleeeleededdedddedd.....eesdlddlssdeeaeedee.kdeeeeslk 273
                  + e+ + +e +e+ ++ e+++ +e++++d+      + d+ + +++       + k+eeee++k
  EHU00433.1 207 ADAEEAEKKEAKEKADQEEQKKAEEKAKADEaeeeqRKADQAKADEE-------KaKAEEEEKAK 264
                 33334444444444433333222222222222221111111111111.......11222221111 PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.1    0.0088       3.8     175     245 ..     207     277 ..     192     304 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0088
        PPL5 175 eerlaaeakgveeveeksskkkskekkkklkkktsrkkkkegkkekesekeeededeeddlsdlvnv.vegs 245
                 +++ +ae+k+++e  +++++kk +ek k+ + +++++k ++ k+++e+ k+ee+e+ +   sd+ ++ v+++
  EHU00433.1 207 ADAEEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKADQAKADEEKAKAEEEEKAKS-DSDMTEArVKAD 277
                 33344444444443444444444444444444444555554454444444433333333.388877623444 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.9     0.023       9.9     266     322 ..     210     268 ..     166     284 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.023
      DUF913 266 ssasskseasssssssetkeeekssededvemeda..eeetesesdeseeseeekekns 322
                 ++a++k++++++++++++k+eek+++de +e++++  ++++++e++++ee+e+ k++++
  EHU00433.1 210 EEAEKKEAKEKADQEEQKKAEEKAKADEAEEEQRKadQAKADEEKAKAEEEEKAKSDSD 268
                 22222223333333333333333222322222222222333333333333333344433 PP

>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  12.3     0.023        10      95     222 ..     213     344 ..     186     350 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.023
        MMR1  95 skltiketleqlreeksqqksks.aekekqkrsvaakseqesekveeleksksereise.tssaiSestlleledletteaetlnpnnsveek...... 185
                  k   ke+ +q +++k ++k+k    +e+q ++ +ak  +e+ k ee+ek ks++++ e + +a S   ++ ++   ++ +e          k      
  EHU00433.1 213 EKKEAKEKADQEEQKKAEEKAKAdEAEEEQRKADQAKADEEKAKAEEEEKAKSDSDMTEaRVKADSAYVACGKQAPTPFSGE----------Kaldyrk 301
                 3333344444443322222222202222233333333334444444444555554443314455566666666655433222..........0333444 PP

        MMR1 186 ......kpavektkspskrivStssvassleevelnelpkdle 222
                       ++ +ek+k+ + r +  s++ s lee+   e +k +e
  EHU00433.1 302 rvlmgmQKHSEKHKDVNIRAIADSATLSVLEEAIYGEARKSIE 344
                 4445567778888889999999998888888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2861  (0.159574); expected 358.6 (0.02)
Passed bias filter:                     1174  (0.0654805); expected 358.6 (0.02)
Passed Vit filter:                       391  (0.0218082); expected 17.9 (0.001)
Passed Fwd filter:                        84  (0.00468515); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 1.02u 0.32s 00:00:01.34 Elapsed: 00:00:00.43
# Mc/sec: 2784.88
//
Query:       EHU00434.1  [L=278]
Description: hypothetical protein CKS_2378 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2157.41
//
Query:       EHU00435.1  [L=476]
Description: hypothetical protein CKS_2377 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-14   54.2   0.0    1.4e-14   53.7   0.0    1.1  1  DUF1073   Protein of unknown function (DUF1073)


Domain annotation for each model (and alignments):
>> DUF1073  Protein of unknown function (DUF1073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   7.8e-19   1.4e-14      10     321 ..      41     349 ..      34     375 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 7.8e-19
     DUF1073  10 swlarkiidipAedmlrngielkg..ekdkdqlkaieaelkrLglkeallealkwarlfGgaallikvkdededlskPldpekvgkgslkglrvldree 106
                 ++l  k +++p + ++ + ++ ++  + d+ ++ + ++ ++r+gl+e++++++  +r +G+aa+ +++++     ++Pl    + +++  +++v d+ +
  EHU00435.1  41 HPLGGKLVEKPINMAMCKPRSYNVetDPDERVVRQFREVWERMGLNEKIKNLFYVSRCYGAAAIGVGTDGV--TCKDPLPTFGL-REEDVYINVWDPLN 136
                 5666788999999999888888885466777899************************************9..8*****66666.45555999999999 PP

     DUF1073 107 vptsneldsdplspdygkpetYevkskedgtaavkvHkSRli.rfigkelpdmlkpa.enfwGeSvlqslldavkrfdraaasvaqlleranllviktd 203
                  + s   d++p s      ++++  +++ + a +  H+SR + +f+g ++    +++   f G+Sv q++l   k +  + +  + + ++a +lv kt+
  EHU00435.1 137 AAGSMVTDQNPNS------RFFQQANATLKIASKSWHPSRTLkIFNGTPIYLEYQNStFGFTGRSVFQRVLYPMKSYIGTMVANNLVAKKAGVLVAKTE 229
                 9545566666666......5555555555556667*******99999998655554459**************************************** PP

     DUF1073 204 gladalaagdeedeleerleliklarsnegmlvidkeeeleqkstsls..glkdllaqfqeklaaaskiPltrLfGqspa.GlnatGegDlrnYydrik 299
                 + + ++a+g  +++  ++ e + +  +neg+l i++++++e+ +++     l+ + +++  +++a s++P++ ++ ++ + G++  G++D +   ++++
  EHU00435.1 230 Q-NGSVASGIMAAATGKKRENV-KISENEGVLSIGTKDDIESLNLQNIdkALSTARDNIISDISAGSDVPAILIKEEAFSnGFG-EGKEDSKAISQYVD 325
                 5.55899998865555555555.57899*********999988876543569999999999***********999998652665.78999776555555 PP

     DUF1073 300 alQea..elrpvLerllellllse 321
                 ++++    + +  erl++++++ e
  EHU00435.1 326 GVRQViePVMDYFERLVRYIAWNE 349
                 555533334447899999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3944.13
//
Query:       EHU00436.1  [L=376]
Description: hypothetical protein CKS_2376 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.052   14.0   0.0       0.11   12.9   0.0    1.5  1  DUF4089      Protein of unknown function (DUF4089)
      0.076   12.7   0.4       0.33   10.6   0.0    2.3  2  Terminase_6  Terminase-like family


Domain annotation for each model (and alignments):
>> DUF4089  Protein of unknown function (DUF4089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.11      13      32 ..     238     257 ..     236     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
     DUF4089  13 ldpeyrpgVvanferiaaiA 32 
                 l pey+pgV +n+er+a+i 
  EHU00436.1 238 LLPEYMPGVYNNLERLAKIC 257
                 669**************995 PP

>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.7e-05      0.33      58     113 ..      25      77 ..       2     175 .. 0.74
   2 ?   -1.7   0.1      0.22   1.9e+03     132     166 ..     293     335 ..     279     360 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.7e-05
                  TTS--EEEE-SSEEEETTS-EEEEES....SHHHHHTS--SEEEEESGGGSTTHHH CS
  Terminase_6  58 ildiefeesaknlvvlsnGaslhflslesetaggiqGaqidliyfDElteipksqe 113
                  +++++ +  ++  + l+nG+++ f  + + ++ + +G++++ +++DE+++ +    
   EHU00436.1  25 LIKTQSR--SEKRILLKNGGKIDFWVTDD-NKLAGRGRKYHCVLIDEAAFTKSPEM 77 
                  2333333..33445559************.89999************988776554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.22
                  EEE---SSSHHHHHHHHHHCTSS........-EEEEE-GGGSG CS
  Terminase_6 132 attpptpdhgvydfvtgwldeeg........pqsvtkiqavve 166
                  + ++++++ + + + +g++++e+        +++v++++++++
   EHU00436.1 293 SVLTSKGKDERAVLASGHHWQEKakiakpafDKTVEFKKKTAN 335
                  5566667777777777888888555555555444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2968.70
//
Query:       EHU00437.1  [L=214]
Description: hypothetical protein CKS_2375 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-10   40.6   0.0    1.9e-09   38.1   0.0    1.9  2  Terminase_2  Terminase small subunit
  ------ inclusion threshold ------
      0.087   12.8   0.7       0.17   11.9   0.7    1.5  1  L27_1        L27_1


Domain annotation for each model (and alignments):
>> Terminase_2  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.1e-13   1.9e-09      40     129 ..       3     161 ..       1     188 [. 0.87
   2 ?    0.7   0.2     0.075   6.7e+02      40      61 ..     180     201 ..     173     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.1e-13
  Terminase_2  40 LrkpkIkkaIreakaereertiieadeVlqellkiaraeitdeve..................................................... 84 
                   rkp +++aI++  +++ e++i++a+++l  + +ia a+++++ +                                                     
   EHU00437.1   3 YRKPAVARAINQGIEQLTEQAILNAQDILRHWHEIAIADPGEISQmrrvccrycwgfdnryqwideteydkaaakaandskpppdqsggfgfvanddp 100
                  58**************************************8888888888888888888888888888889999999999999999999999999999 PP

  Terminase_2  85 .............rvklkdseevdkeilrevkegke...gvkvklkDklkAlellakhlgl 129
                                v l d++++ + ++r ++++k+   g++v ++D+++Al++la   +l
   EHU00437.1 101 npdcpkcagegieDVFLADTRDLVGPARRLIAGVKKtkfGIEVMTRDQDAALKNLAAFHNL 161
                  999999999999999999*****9999999999999999****************998744 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.075
  Terminase_2  40 LrkpkIkkaIreakaereerti 61 
                  L++ kIk++I+++ +  + +++
   EHU00437.1 180 LSNEKIKAEIENLRNGANGNEQ 201
                  899*******998776666655 PP

>> L27_1  L27_1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   1.9e-05      0.17       3      36 ..     144     178 ..     142     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
       L27_1   3 rkkDaerALelLeeyrakLskeedeeLrq.alerv 36 
                   +D++ AL+ L ++++  s+e+d+eLr  ++erv
  EHU00437.1 144 MTRDQDAALKNLAAFHNLASSEQDRELRLlEIERV 178
                 57899**********************95367776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1759.24
//
Query:       EHU00438.1  [L=85]
Description: hypothetical protein CKS_2374 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 784.89
//
Query:       EHU00439.1  [L=288]
Description: hypothetical protein CKS_2373 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 2578.73
//
Query:       EHU00440.1  [L=177]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-06   26.9   0.0    6.6e-06   26.3   0.0    1.3  1  ParBc     ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.7e-10   6.6e-06      27      89 ..       1      60 [.       1      61 [. 0.90

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.7e-10
       ParBc 27 vasIkkkGllqPiivrktrqgryeiiaGerRlrAakrlglkevpvivleid.deeamalslien 89
                +asI++ G+++Pi++++      eiiaG+ R+ Aa+ +g+  vp i l    d ++ a +++ n
  EHU00440.1  1 MASIEEFGWTNPILIDECG----EIIAGHGRVLAAEQMGIAAVPTITLSGLtDAQKAAYRIADN 60
                58****************9....*********************99998886888877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1484.44
//
Query:       EHU00441.1  [L=205]
Description: hypothetical protein CKS_2371 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-08   32.5   0.1    8.8e-08   32.2   0.1    1.2  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   4.9e-12   8.8e-08       7     164 ..      50     184 ..      32     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.9e-12
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppe 100
                      +el +++ +l+  +  +g vLd+G G G + e     + +  g+D +p+ ve+++ + ++ +  +         +++   + +++leh++ p+ 
       EHU00441.1  50 RELTAARIQLVS-RHYSGVVLDVGIGAGQFVE----ARPDTKGFDVNPAGVEWLKARGQWAHLYH---------DRYPALTFWDSLEHIDRPEV 129
                      444444444443.77889**********9999....7899************9866666666666.........9******************* PP

  Methyltransf_23 101 llrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevve 164
                      +++++ +      ++++s+p  +  +++ l++ ++ ++  +hi +++ + l +++ ++G+++ve
       EHU00441.1 130 AIARAEK------WVFVSVPIFE-GAEHVLRSRHFRRD--EHIWYWTHDGLIKWFAANGFKLVE 184
                      *******......******9533.45555555565553..7********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1755.97
//
Query:       EHU00442.1  [L=302]
Description: heptosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-05   21.8   0.0    0.00014   21.3   0.0    1.2  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
        1.4    8.8   3.9       0.68    9.8   0.2    2.3  2  MGTL            MgtA leader peptide


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.6e-08   0.00014     103     211 ..     123     233 ..      96     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.6e-08
                     --SSS-EEEEE---TT....GGGS--HHHH.HHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSEEEEE CS
  Glyco_transf_9 103 llaerpyivflpgask....daKrWpeeky.aelaealqekgyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakadlvvgn 192
                        ++p++v+ p++++    +a r p +ky +e+++ l  +g+ v  ++ +e  + e    + +  +       g++s++++ al+++ad v++ 
      EHU00442.1 123 VPDGKPIAVIRPTTERtewhNASRGPLNKYvDEVSRLLAIRGFHVLSIADNEP-GLEWIPDLEPFAH--RKLHDGQLSITQMLALVERADIVLTG 214
                     34789*********998888778888888868**********99998888888.9999999999988..33445********************* PP

                     SSHHHHHHHHTT--EEEEE CS
  Glyco_transf_9 193 DSGlmHlAaAldrpviaLY 211
                        +mH A A ++p+i L 
      EHU00442.1 215 ACVVMHAALAYGKPMICLQ 233
                     ****************985 PP

>> MGTL  MgtA leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.26   2.3e+03       6       9 ..      37      40 ..      37      41 .. 0.93
   2 ?    9.8   0.2   7.6e-05      0.68       2      14 ..      73      85 ..      72      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.26
        MGTL  6 TPLP 9 
                TPLP
  EHU00442.1 37 TPLP 40
                9**9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 7.6e-05
        MGTL  2 dPdPTPLPRrRlk 14
                +P+P   PR R++
  EHU00442.1 73 EPEPPGIPRQRIF 85
                9***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2414.17
//
Query:       EHU00443.1  [L=49]
Description: hypothetical protein CKS_2369 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 414.95
//
Query:       EHU00444.1  [L=179]
Description: gp55 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-31  108.8  16.7      3e-31  108.6  16.7    1.0  1  DUF2514   Protein of unknown function (DUF2514)
     0.0045   17.0   2.5      0.006   16.6   2.5    1.2  1  BRE1      BRE1 E3 ubiquitin ligase
  ------ inclusion threshold ------
      0.017   15.4   8.1      0.021   15.1   8.1    1.2  1  ATG16     Autophagy protein 16 (ATG16)
       0.43    9.9  11.0       0.55    9.5  11.0    1.2  1  DUF4407   Domain of unknown function (DUF4407)
        1.4    7.4   8.4        1.6    7.2   8.4    1.1  1  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6  16.7   8.5e-35     3e-31       1     160 [.      12     173 ..      12     174 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 8.5e-35
     DUF2514   1 WkqlavvlvlvaalvwG.fahGrskeeaewekrwadrdaedsqakviaeeaaReeeqrrkaaaekavkdaqekaaaAradavgaaaaadrLrqeaakL. 97 
                 Wk+l++ l lva + w  +  G   ++ +w+ +w +rd  ds a   ae a+R+ee+rr++aa++ +k a e++a  +ada+ a+ a+d L+q++a L 
  EHU00444.1  12 WKPLVITL-LVAFSLWRaYSFGVDSTNSKWNLKWSQRDLVDSTAALHAEVAERNEERRRQQAADEERKRADEELAKVQADADAAQRAGDGLQQQLATLr 109
                 88887665.556778999********************************************************************************7 PP

     DUF2514  98 .aaaksavaadsaaaargkaaaraavvLadlLsraaerarelAeaaDrsriagetCeraYdavr 160
                  + a s   + sa+aa+g a a++  vLa+lL+ +++ra+ +A++aD+ + ag  Cer Yd v+
  EHU00444.1 110 rQLAGSETGRISAIAAAGAAKAETTRVLAELLGESDKRAGIYAKEADERYAAGSSCERTYDKVT 173
                 76788889999**************************************************997 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.5   1.7e-06     0.006       2      71 ..      46     115 ..      45     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
        BRE1   2 qkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKs 71 
                 q  Lv+ ++a  +  ++ ++     ++  e+ +r++ e ak +    aa+r+ d l+++l +L+++l+ s
  EHU00444.1  46 QRDLVDSTAALHAEVAERNEERRRQQAADEERKRADEELAKVQADADAAQRAGDGLQQQLATLRRQLAGS 115
                 67799999999999999999999999****************************************9866 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   8.1   5.8e-06     0.021      26     116 ..      48     117 ..      34     177 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.8e-06
       ATG16  26 rLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqklee 116
                 +L d t+al+ae a+ +++                   +++q  ++ +++ +  +++la+++++  +++++   l+q+l +l  +l+  e+
  EHU00444.1  48 DLVDSTAALHAEVAERNEE-------------------RRRQ--QAADEERKRADEELAKVQADADAAQRAGDGLQQQLATLRRQLAGSET 117
                 5666666666666666222...................1112..233455568899**************************999976554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  11.0   0.00015      0.55     109     200 ..      57     138 ..      41     178 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
     DUF4407 109 daelaeeqqeeakelke.qlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaela 200
                 +ae+ae+++e+ +++ + + ++ +++ela+ +a+ +a+q++ d ++++l++lr++++   +g     ++++a  g       a+ ++ ++ la
  EHU00444.1  57 HAEVAERNEERRRQQAAdEERKRADEELAKVQADADAAQRAGDGLQQQLATLRRQLAGSETGR----ISAIAAAG-------AAKAETTRVLA 138
                 445555544444333320333337777777777777777777777777777777777544442....22222222.......22333333333 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.4   0.00045       1.6     239     312 ..      67     138 ..      38     171 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00045
        FUSC 239 arllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaella 312
                 +r++++ ++e+++a +ela++ a+++a  a++a ++l+++la+lr++l+  ++ +  + ++a+++ a+   +la
  EHU00444.1  67 RRRQQAADEERKRADEELAKVQADADA--AQRAGDGLQQQLATLRRQLAGSETGRISAIAAAGAAKAETTRVLA 138
                 333444444444443346666666666..556677777777777777777666666333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1657  (0.0924201); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 1595.74
//
Query:       EHU00445.1  [L=203]
Description: chitinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-09   35.5   0.4    1.4e-07   31.7   0.4    2.5  1  Glyco_hydro_19  Chitinase class I


Domain annotation for each model (and alignments):
>> Glyco_hydro_19  Chitinase class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.4   7.6e-12   1.4e-07      89     158 ..      98     166 ..      17     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7.6e-12
  Glyco_hydro_19  89 ssdycessakwplaagkkyyGrGpiqlsynynygeaGqaiGqdllnnpdlvatdavvsfktalwfwmtaq 158
                     +  y+++  + + + g +y GrG iq++ + ny ++G  +G+dll  p+l+ +d   + ++a wf+ ++ 
      EHU00445.1  98 NIVYAHRMGNIAESDGWNYRGRGLIQITGHDNYRDCGAGLGTDLLLVPQLLEQDEYAA-RSAAWFFASKG 166
                     45577777778888899*************************************9866.66779987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1661.28
//
Query:       EHU00446.1  [L=100]
Description: hypothetical protein CKS_2366 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-22   79.8   1.7    1.4e-22   79.5   1.7    1.1  1  Phage_holin_3_7  Putative 3TM holin, Phage_holin_3


Domain annotation for each model (and alignments):
>> Phage_holin_3_7  Putative 3TM holin, Phage_holin_3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   1.7   7.6e-27   1.4e-22       1      79 [.      13      91 ..      13      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 7.6e-27
  Phage_holin_3_7  1 lnavaclaiavrLltyrRngarhrrgiswlAyllivasgsvairillglyrevdlaevlinvvLlvlvlrarGNvarll 79
                     +na+ac++ a  L t++R+ga+h+r  ++lA +li+a gsv+i+il g+y+ ++++e++inv+L++++++a+GNv r++
       EHU00446.1 13 VNALACAVSATTLGTFQRKGAKHKRIGAFLALVLIIACGSVTIQILTGEYTVANPSETVINVMLTIFIVSAKGNVMRVF 91
                     69***************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 761.61
//
Query:       EHU00447.1  [L=67]
Description: hypothetical protein CKS_2364 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-17   61.5   0.1    5.7e-17   61.5   0.1    1.0  1  DUF2767   Protein of unknown function (DUF2767)


Domain annotation for each model (and alignments):
>> DUF2767  Protein of unknown function (DUF2767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.1   3.2e-21   5.7e-17       6      67 .]       5      65 ..       1      65 [. 0.93

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 3.2e-21
     DUF2767  6 leeelYdEvCRvvGdvVlvlaelGqetkriviadvlrTrlarkkdqrdaleqkalEkairll 67
                 +e lY+E+CR+vGd+V+ l ++  etk+  ia+ lrT+l+  + + +    ka+E ai +l
  EHU00447.1  5 ESEALYNEMCRIVGDAVFILCDTDVETKKYNIANALRTALSGDHGHTE-YMRKAMEAAITVL 65
                5799*************************************9998887.899*******875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 603.63
//
Query:       EHU00448.1  [L=232]
Description: phage antitermination protein Q [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-48  162.9   0.0      1e-47  162.6   0.0    1.0  1  Phage_antiter_Q  Phage antitermination protein Q
  ------ inclusion threshold ------
      0.067   13.3   0.0      0.075   13.1   0.0    1.2  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> Phage_antiter_Q  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   1.1e-51     1e-47       3     218 ..       6     220 ..       4     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 1.1e-51
  Phage_antiter_Q   3 leyvReqlitAlaDisgetkGqLvaleenalvetdrykrkklrvidevegslitldaePvkakqsrakkksiilvkeveystasWRRAvlalde 96 
                      +ey R +l+ Al+D sg+tkGqL a+ e++ +e dr +rk+ +++   +g+ ++ ++  + + ++r+++++ ++++++e+++a+WRRAv  l e
       EHU00448.1   6 IEYARIELTRALMDNSGKTKGQLQAFCEHPPAEKDRCPRKQIHMVEFDDGRKVKAENTSLYVLETRSRRRPLPPINDYEFAGAPWRRAVNFLPE 99 
                      79******************************************************************************************** PP

  Phage_antiter_Q  97 eekAWllycYsektkykeqveivqylWekFlaqlkgkrlaaktkerlraLvwlavqdvkkeladreidsyeraelaslvGvskknWketykkrW 190
                       e+AWl+ycY+  +++++q  i++ +W+   + l+   l +ktk+rl  L+wla+qdv+   +++  + y  a+la l+ v+ ++W ++y+ +W
       EHU00448.1 100 YEQAWLKYCYGFDLTFRYQTLICEVIWNGHQKYLPT-GLLNKTKKRLISLIWLAAQDVAATRNNDTYKEYAGAALARLMSVNPSTWLRVYAPHW 192
                      *******************************99998.8999*******************999999999************************* PP

  Phage_antiter_Q 191 lalkelfleldkeallsvaekrlkqkes 218
                      + +k++f eld  al++  +  ++ +++
       EHU00448.1 193 AHFKRAFDELDVGALQHTLDHHCEAIPE 220
                      *****************99999998876 PP

>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.4e-06     0.075      35     145 ..      97     210 ..      15     230 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.4e-06
                   CCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TCEEEC.C.CCCEECTTECEEECTHCHHHH..HHC.SCS...EEEEE CS
  Sacchrp_dh_C  35 lpapeasdnplgYkfsWspegvlreltnpakvlengqvkevpgsellkgakkpiyi.l.pglslegypnrdslpyeelyg..lpeaktl...frgtl 124
                   lp  e +   l+Y+  +  +  +r +t  ++v++ng++k++p + l k++k+ i + + +  +    ++r+  +y+e+ g  l+++  +   +  ++
    EHU00448.1  97 LPEYEQA--WLKYCYGF--DLTFRYQTLICEVIWNGHQKYLPTGLLNKTKKRLISLiWlA--AQDVAATRNNDTYKEYAGaaLARLMSVnpsTWLRV 187
                   5655555..56888888..8889999999*************666655777777775432..34477788889999999955443323344455555 PP

                   EEEEHHHHHHHHHHH..TTT--S CS
  Sacchrp_dh_C 125 rypgfsellkslkel..Gllsee 145
                   + p++ ++ +++ el  G l+++
    EHU00448.1 188 YAPHWAHFKRAFDELdvGALQHT 210
                   55677888888888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1765.23
//
Query:       EHU00449.1  [L=79]
Description: hypothetical protein CKS_2362 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-30  105.4   0.1    1.1e-30  105.3   0.1    1.0  1  DUF1364   Protein of unknown function (DUF1364)


Domain annotation for each model (and alignments):
>> DUF1364  Protein of unknown function (DUF1364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.1   6.3e-35   1.1e-30      16      91 ..       1      77 [.       1      78 [. 0.95

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 6.3e-35
                -TTT----GGG-EEEE--------------SSSEEEE-HHHHHHHTTSS-SS-..HHHHHHHHHHHHHHHHHHHHHTT CS
     DUF1364 16 ipgvCNgnpeTtvlahyrlaglagvglksddllaafaCsachdaidrRtrild..aeeaelvhaegvlrTqealekeg 91
                +pgvCN npeT+vl+hyr+ gl+g+g+k+ddl+aa++C +chda+d+R ++ +  +ee++l+haegv+rT+++++keg
  EHU00449.1  1 MPGVCNFNPETSVLTHYRMPGLCGTGIKPDDLVAAIGCNCCHDAVDGRIKT-EysREELRLMHAEGVFRTLTIWKKEG 77
                7***********************************************984.335********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 715.53
//
Query:       EHU00450.1  [L=217]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-56  188.8   0.0    6.5e-56  188.6   0.0    1.0  1  Dam       DNA N-6-adenine-methyltransferase (Dam)


Domain annotation for each model (and alignments):
>> Dam  DNA N-6-adenine-methyltransferase (Dam)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.6   0.0   3.6e-60   6.5e-56       1     169 [.      17     201 ..      17     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.6 bits;  conditional E-value: 3.6e-60
         Dam   1 ksntpkevrDlWrtPdevfaaleaefgkfvLDaaadeeNakcekflteednaLkqdWsk.....ngaiflNPPYSri..........lrfvkkaaeqmr 84 
                 +s+++kev+D+WrtPd+++++++a+fg+f LD++ad++N+kc++++t+ednaL qdWs+      ga+++NPPYSr+          +  ++++a +mr
  EHU00450.1  17 QSHKLKEVGDQWRTPDAIWWGINAKFGPFSLDLFADDHNTKCDNYYTAEDNALVQDWSArlgflGGAAYANPPYSRAqqfegeyitgMVPIMQHAAAMR 115
                 699********************************************************999999**********************999********* PP

         Dam  85 eknqkivmLlkadtstaWfkealedadevafitrgRisF......isaetkk.esdannkgsvlvidrefkeprtslsyvskkellrkGqel 169
                 e ++++v+ +k++ts+ W++   e+ad++af+ rgRisF      i+ae +  es+a++  +++++d+++++++t  sy+s++el+++G+ +
  EHU00450.1 116 ELGGRYVFFIKSATSESWWP---ENADHIAFV-RGRISFdlpdwyIPAEGEPsESSAGFGMAIAIFDKTWTGQAT--SYISREELESTGRMI 201
                 ********************...*********.****************9999**********************..***********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1931.87
//
Query:       EHU00451.1  [L=199]
Description: hypothetical protein CKS_2360 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-81  271.0   0.6    5.7e-81  270.9   0.6    1.0  1  DUF1367   Protein of unknown function (DUF1367)


Domain annotation for each model (and alignments):
>> DUF1367  Protein of unknown function (DUF1367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   0.6   3.2e-85   5.7e-81       1     196 []       1     197 [.       1     197 [. 0.98

  Alignments for each domain:
  == domain 1  score: 270.9 bits;  conditional E-value: 3.2e-85
     DUF1367   1 maelqlvktsngllvpateadrellkslkvGevvkadlkkvRnlafHrkfFalLdlgfeYWePaggvisqkErklvrglakflaavagse..svlkeaa 97 
                 ma++ql k s ++l pat++++e+l+ +k+Ge+++ad+k+vRn++fH++fF+lL+lgf+YW+P+gg+i ++E+klv+g+++fl++++g++   +l++aa
  EHU00451.1   1 MAQIQLQKVSPETLTPATPEASEFLQRIKIGEWIHADFKRVRNYQFHKRFFKLLQLGFDYWTPTGGAILPEEQKLVNGFVDFLCRQVGQQhsVALSDAA 99 
                 99**************************************************************************************9976789**** PP

     DUF1367  98 deylakvakkRaeklisidksldafrewvtveaGfydivelpdGslkkeaksisfanmdeeeFqelYkavlnvlWnliLsrkfeseeeaenaadqllsf 196
                 ++yla  a+ R ++ i + ks++a+rewvt++aG+y+++ +pdGs++++aksisfa+mde eFq++Yk++lnvlWn+iL+rkf+s  e+en+a+qll++
  EHU00451.1 100 EQYLADAAHIR-TRDIALLKSFEAYREWVTIQAGYYTEHIYPDGSRNRRAKSISFAKMDEIEFQQFYKSTLNVLWNWILFRKFSSPAEVENVAAQLLEY 197
                 ***********.5669********************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1508.63
//
Query:       EHU00452.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00452.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 931.64
//
Query:       EHU00453.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00453.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00453.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00453.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00453.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 864.89
//
Query:       EHU00454.1  [L=1157]
Description: family 2 glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0044   17.0   0.1     0.0081   16.1   0.1    1.5  1  EOS1             N-glycosylation protein
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.066   13.0   0.0    1.8  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> EOS1  N-glycosylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1     9e-07    0.0081      29     112 ..     548     631 ..     546     805 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9e-07
        EOS1  29 WlvyYsilaaliRllslqaiiwp......lvllllsvlsadkeqplaaWivisttltlseivqswvtSnladaeldsrevksrssaaerl 112
                 W ++Ys+ +     +sl++i+++      l+ ++++++++ ++qp+   ivi t  ++se +  w+t nl++a+ + +  ks+ s++++ 
  EHU00454.1 548 WRLKYSTEPV----ISLSIILVAgtdihqLQCCITTLFEQ-THQPVCQLIVIVTP-ATSEAITAWLTTNLSTASVNINILKSHGSQTQEA 631
                 99*****995....68888877522211134444455555.59*****9999765.66888999********999977777755544433 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.4e-06     0.066      12     118 ..     572     679 ..     561     689 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.4e-06
                      THHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCH.....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE.-TTHHHH CS
  Glycos_transf_2  12 tlletlesllaqdpypdfeiivvDDgStDetveileelak.....edprvrvirreenvGkagalnaglraatgdyilflDaDdep.dpdwlek 99 
                       l+ +++ l +q+  p  ++iv+       t e + ++        + ++ +++    + + +a+n+++ +a g+++l+lD  + + +++wle 
       EHU00454.1 572 QLQCCITTLFEQTHQPVCQLIVIVTPA---TSEAITAWLTtnlstASVNINILKSHGSQTQEAAINEAVGQAEGEFLLLLDPRVLFvSRGWLEA 662
                      667788888888666666666666554...3333333333333369999999****999**********************987651666**** PP

                      HHHHHHH.TTCEEEEEEEE CS
  Glycos_transf_2 100 lvealekdgadvvlgqrpr 118
                      l+ ++ ++++  v++++  
       EHU00454.1 663 LACHALRHDV--VCVAPHI 679
                      ******9666..6666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 8445.63
//
Query:       EHU00455.1  [L=1230]
Description: family 2 glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-20   73.1   0.0    2.4e-19   69.8   0.0    2.3  2  Glycos_transf_2  Glycosyl transferase family 2
    6.9e-15   55.6   0.1      2e-14   54.0   0.0    1.8  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    1.1e-09   38.2   0.0    4.2e-09   36.3   0.0    1.8  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    3.3e-06   27.0   0.0    7.9e-06   25.7   0.0    1.6  1  Glyco_tranf_2_5  Glycosyltransferase like family
     0.0056   16.2   0.2       0.03   13.8   0.1    2.3  3  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
      0.025   14.9   0.0        0.1   13.0   0.0    2.0  2  Glyco_trans_1_2  Glycosyl transferases group 1
       0.17   12.3   0.0       0.44   11.0   0.0    1.8  1  Glyco_trans_1_4  Glycosyl transferases group 1
       0.32   11.5   2.1       0.97   10.0   0.8    2.6  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.2   4.5e+02      35     111 ..     355     440 ..     338     482 .. 0.84
   2 !   69.8   0.0   1.1e-22   2.4e-19       1     166 [.     620     797 ..     620     801 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
                      EES-.SSCHHHHHGGGCH...C-TTEEEEEESSS-HHHHHHHHHHHH--SS......EEEEEESSEEE-TTHHHHHHHHHHH.TTCE CS
  Glycos_transf_2  35 DDgS.tDetveileelak...edprvrvirreenvGkagalnaglraatgd......yilflDaDdepdpdwleklvealekdgadv 111
                      +D S t+  ++ l+++ +   e++++ ++  +en G a+a  + l+a++ +      ++l+ D D + ++++++  +  + ++ + v
       EHU00455.1 355 KDRSiTEARRAALQSFIQsvpESGDIGIVIIDEN-GDAAACERSLAAVRQQtlppatVMLLSDVDIALNEGTISACASGWVAELNEV 440
                      4666688888899999999999999999999999.9999999999999999999999999999999999988887776666555555 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 1.1e-22
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-.SSCHHHHHGGGCH.C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgS.tDetveileelak.edprvrvirreenvGkagalnaglraatgdyilflDaDdep 92 
                      s+++ t   +++l+++++ l + + yp +e+++vD+ S    +  +l +l k + ++++v+r +  + +a+  n+++++a+gd++lflD D+++
       EHU00455.1 620 SIIVSTRDHAALLRACIDTLMEKTRYPYYELLIVDNQSvDAQACTFLNDLDKlNIEQIKVLRYDAPFNFAAMHNRAAEQAKGDVLLFLDNDCQI 713
                      89************************************77788899999999*****************************************9 PP

                      -TT.HHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.........EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHH CS
  Glycos_transf_2  93 dpd.wleklvealekdgadvvlgqrprifgetdeiernkrv.........generlyfkerkrslkgnlsfeigsaallrreal 166
                      +   wl  l+e++ ++++++v +   +++g   +    ++v         g +e+ +++    ++ +nl+ ++ s++++r++++
       EHU00455.1 714 TQPdWLDALLEHALRPEVALVGARLEYHDGRVQHGGYLLGVqngvdspweGMQEHARGFQSYLQTEHNLAAVSASCMMVRKDVF 797
                      8555**************99999999999999999999999*********9999999************************998 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.1   4.6e+03      32      54 ..     380     402 ..     364     480 .. 0.63
   2 !   54.0   0.0   8.9e-18     2e-14       4     215 ..     619     842 ..     616     868 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
  Glyco_tranf_2_3  32 vevvvvvdesdaetlevaeelaa 54 
                      + +v++++++da+++e+  ++++
       EHU00455.1 380 IGIVIIDENGDAAACERSLAAVR 402
                      55666666666666654333222 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 8.9e-18
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqe.yprvevvvvvdesdaet.levaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvD 95 
                      ++++V t + ++ l+++++ l   + yp +e+ +v+++s +++ + ++  l ++l  ++++v+ +++ +    ++ + n+a +++k+d++l++D
       EHU00455.1 619 ISIIVSTRDHAALLRACIDTLMEKTrYPYYELLIVDNQSVDAQaCTFLNDL-DKLNIEQIKVL-RYDAPF--NFAAMHNRAAEQAKGDVLLFLD 708
                      799*******************77659*********997666516666664.77887799987.556553..566777**************** PP

  Glyco_tranf_2_3  96 dDtvv.ePdtlkrllqffltpkvgavgtpvfllnrstl............vsalgal.efaerhlrflaarralgvltlnGsgslirrevlkel 175
                       D+ + +Pd l++ll  +l+p+v+ vg++ + + ++               s++  + e a+ +++ l++  + + ++++ s++++r +v+  l
       EHU00455.1 709 NDCQItQPDWLDALLEHALRPEVALVGARLEYHDGRVQhggyllgvqngvDSPWEGMqEHARGFQSYLQT--EHNLAAVSASCMMVRKDVFFSL 800
                      ***999************************9998773336667888888744444442455666655544..455556679************* PP

  Glyco_tranf_2_3 176 egldp.lfllt.dDyelglrlrragfrtayvpgaavrevfps 215
                      +g+ +  f l   D++lglr+ ++g+  ++ p + vr++ ++
       EHU00455.1 801 GGFAEnDFPLYfADVDLGLRAQQQGYLNVWTPWSRVRHMGGA 842
                      ***999777767**************************9654 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.9e-12   4.2e-09      16     184 ..     636     806 ..     620     823 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.9e-12
  Glyco_tranf_2_2  16 eervlqkakyydeeielivvddgSsekfl.eevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfis.sDkfekilklit 107
                       +++++k+ y  +  el++vd+ S +  +   ++ + +ln +       d  +  aa +Nr a++a++d++lFlD Dc i+ +D ++++l+   
       EHU00455.1 636 IDTLMEKTRY--PYYELLIVDNQSVDAQAcTFLNDLDKLNIEQIKVLRYDAPFNFAAMHNRAAEQAKGDVLLFLDNDCQITqPDWLDALLE--- 724
                      589999****..************9975514456666666655433444779**************************9874799***999... PP

  Glyco_tranf_2_2 108 ikklrenidaavvlpvvdlnkedsev......lkdvedltassrvledllaakstlvk..ffapss.ssilinrraflevGGyDEr 184
                        +lr  ++ a+v +  ++ +   +       ++++ d  +++ ++e +  ++s l     +a  s s +++++  f  +GG+ E+
       EHU00455.1 725 -HALR--PEVALVGARLEYHDGRVQHggyllgVQNGVDSPWEG-MQEHARGFQSYLQTehNLAAVSaSCMMVRKDVFFSLGGFAEN 806
                      .6665..666777777777776655333322234455666665.677888887777655667777769999999999999999987 PP

>> Glyco_tranf_2_5  Glycosyltransferase like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.5e-09   7.9e-06       6     178 ..     653     829 ..     650     866 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.5e-09
  Glyco_tranf_2_5   6 vnneelyeeclsylenlevpegyeveiiairnaksiaeaynkalsasdakykvYlhqDvliinkdfikdlleiFkkdkkiGmiGvvGakslpes 99 
                      v+n+++ ++++++l++l+  +  ++ +++ ++  + a+  n+a+++++  ++++l++D  i+++d++  lle+    +++ ++   Ga+   ++
       EHU00455.1 653 VDNQSVDAQACTFLNDLDKLNIEQIKVLRYDAPFNFAAMHNRAAEQAKGDVLLFLDNDCQITQPDWLDALLEHA-LRPEVALV---GARLEYHD 742
                      6788888899999999988888888888889999**************************************99.88997765...67777777 PP

  Glyco_tranf_2_5 100 gvwweskkkvgk...vietskeeakelra.eeeeseyeeVeaidGllmatqydv.....pwredlftgfhfYdvsqslefekagykvv 178
                      g + ++ +  g    v +  +   +++r  ++  ++  +  a+    m++++dv      + e+     +f+dv+  l+ +++gy +v
       EHU00455.1 743 GRVQHGGYLLGVqngVDSPWEGMQEHARGfQSYLQTEHNLAAVSASCMMVRKDVffslgGFAEN-DFPLYFADVDLGLRAQQQGYLNV 829
                      777777774443111555545555555547888899999***************8888888888.345799**************877 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.9   8.7e+03      33      55 ..     411     433 ..     409     439 .. 0.82
   2 ?   -3.3   0.0       2.3   5.3e+03     100     117 ..     510     527 ..     504     531 .. 0.84
   3 !   13.8   0.1   1.3e-05      0.03      24     121 ..     694     805 ..     689     827 .. 0.71

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.9
  Glyco_transf_21  33 llvisDsdvrvkpdyLeellaal 55 
                      ++++sD d+++++ ++   +  +
       EHU00455.1 411 VMLLSDVDIALNEGTISACASGW 433
                      7899*******999998776665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
  Glyco_transf_21 100 favGksmalrreaLeaiG 117
                        vG +++++r++++a+G
       EHU00455.1 510 PYVGRTLLFDRRKVQAAG 527
                      679************998 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.3e-05
  Glyco_transf_21  24 qaleaakydllvisDsdvrv.kpdyLeellaaledpkvglVts.lpvgsdakglaaaleaaf..l.......ntlagvlqa..kls.glgfavG 103
                      +a e+ak d+l+++D d  + +pd L+ ll++  +p+v+lV + l +  ++ + ++ l  ++  +       + +a+ +q+  +++  l  +  
       EHU00455.1 694 RAAEQAKGDVLLFLDNDCQItQPDWLDALLEHALRPEVALVGArLEYHDGRVQHGGYLLGVQngVdspwegmQEHARGFQSylQTEhNLAAVSA 787
                      56788************986269******************99555544444544555444422243443334455555554434326667777 PP

  Glyco_transf_21 104 ksmalrreaLeaiGGfea 121
                      ++m++r++++ ++GGf++
       EHU00455.1 788 SCMMVRKDVFFSLGGFAE 805
                      888899999999999975 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.1   1.2e+04      22      62 ..     236     288 ..     232     314 .. 0.56
   2 ?   13.0   0.0   4.6e-05       0.1       8      81 ..    1143    1213 ..    1127    1218 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.1
  Glyco_trans_1_2  22 Gafaltddaegleelftpgk............evilfedleelaekiryllan 62 
                      G+++   +++g+e +++  +             + +  ++ee+++++++  ++
       EHU00455.1 236 GIPVFLASTTGVEGYLNAHNlqefeqshftvvNLQFCPETEEWIAALKRGFSE 288
                      55555555666666666555555555555444444445666666666665544 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.6e-05
  Glyco_trans_1_2    8 sespnlrlfEaaacGafaltddaegleelftpgkevilfe.dleelaekiryllanpeerraiaeaarervlaeh 81  
                         + nlrl+E+  cG++++++++ ++ ++   g  v l+e   +++  +ir+ la+ +  r+++ + r+ v+++ 
       EHU00455.1 1143 ECKSNLRLLEIGTCGVPIIATSI-EPYRC---GLPVTLVEnRFKDWMGAIRAHLADMDATRRLGDQLRAAVHQDW 1213
                       345679***************55.44444...55678888899*************************9999875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.44      18     132 ..    1082    1192 ..    1066    1194 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                       HHHHHHHHHHH.HHEEEEEES---..HHHHHHHTT-T.TEEEE---THHHHHHHH-SEEEE--......-.--SHHHHHHHHTT-EEEE-TG CS
  Glyco_trans_1_4   18 dllleavpllrkkdvrlvivGdgprpeeleelaagleerveftGfvedlaellaaadvfvaPs......e.gfglkllEamaaglpvVatdv 102 
                       ++ll  +++l +k v+ v++G +pr   ++  + +++ +v f  +    +++  + d++++P+      e   +l llE   +g+p++at++
       EHU00455.1 1082 QILLPLIKELEDK-VEWVFMGMKPR--GVH--C-EFHTGVPFDMYP--EKQASLNLDLALVPLevnqfnEcKSNLRLLEIGTCGVPIIATSI 1165
                       5555555555533.66777773322..232..1.122334443333..344445679******6654433678******************9 PP

                       GGTTT--TTSSEE--TT-HHHHHHHHHHHH CS
  Glyco_trans_1_4  103 ggiaevvgengllvppgdpealaeailrLl 132 
                          +  +g    lv++   +++  ai + l
       EHU00455.1 1166 -E-PYRCGLPVTLVEN-RFKDWMGAIRAHL 1192
                       .5.3323544456763.3666666666655 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   4.4e+03      20      46 ..     262     290 ..     251     355 .. 0.56
   2 ?   10.0   0.8   0.00043      0.97       2      88 ..     627     717 ..     626     724 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
  Glyco_tranf_2_4  20 drilvydndstDgtrailkelpevk..ll 46 
                      +++ v++ + +++t +++++l++     +
       EHU00455.1 262 SHFTVVNLQFCPETEEWIAALKRGFseAV 290
                      56666666777777777776655331222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00043
  Glyco_tranf_2_4   2 neadiLpeflahh.lalg..fdrilvydndstDgt.railkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvvpd 88 
                      + a++L ++++ + ++ +  + ++l++dn+s D    ++l  l+++++ +++    d+++ ++++++ +a++a++d +l++D D  ++ pd
       EHU00455.1 627 DHAALLRACIDTLmEKTRypYYELLIVDNQSVDAQaCTFLNDLDKLNIEQIKVLRYDAPFNFAAMHNRAAEQAKGDVLLFLDNDCQITQPD 717
                      556666666665423344224679*********8725677778999999999755579999*99999999999***********8888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 8366.72
//
Query:       EHU00456.1  [L=309]
Description: FliC family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-41  140.6  18.5    3.5e-41  140.6  18.5    2.8  3  Flagellin_N      Bacterial flagellin N-terminal helical regio
    1.3e-29  102.3   8.2    1.3e-29  102.3   8.2    4.3  5  Flagellin_C      Bacterial flagellin C-terminal helical regio
  ------ inclusion threshold ------
      0.015   15.7   4.9        5.2    7.6   0.1    3.5  3  Snapin_Pallidin  Snapin/Pallidin
      0.044   14.1   2.4       0.25   11.7   1.0    2.4  2  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.28   10.6   5.8        3.2    7.2   0.2    2.3  2  DUF3829          Protein of unknown function (DUF3829)
        0.3   11.4   3.9        1.5    9.1   0.5    2.3  2  Muted            Organelle biogenesis, Muted-like protein
       0.65    9.5   4.0        1.2    8.6   0.3    2.3  2  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.9    8.5   7.8         72    3.4   3.8    3.5  2  DUF1664          Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6  18.5   1.6e-44   3.5e-41       1     135 [.       4     138 ..       4     142 .. 0.99
   2 ?    1.9   3.6     0.096   2.2e+02      78     119 ..     226     265 ..     165     274 .. 0.61
   3 ?    2.9   3.6     0.047   1.1e+02      47      87 ..     244     288 ..     235     306 .. 0.69

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 1.6e-44
                  --SS-STTHHHHHHHHHHHHHHHHHHHHTTSBTTSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T CS
  Flagellin_N   1 istnalalaarsnlnknqaelqkaqeelstGlridsalddaaglaisvslrsqiaglsqlvrnnslgisrlqtaqgalselsdilqrlkelavaasnd 98 
                  i+tn+l+l++++nl+k+q++l +a+e+ls+Glri+sa+ddaag ai+++++s+i+gl++++rn+++gis+ qta+gal+e++++lqr+++l+v+a+n+
   EHU00456.1   4 INTNTLSLVTQNNLSKSQSSLGTAIERLSSGLRINSAKDDAAGEAIANRFSSNINGLTVAARNANDGISLSQTAEGALTEVNNNLQRVRDLTVQAQNS 101
                  9************************************************************************************************* PP

                  TTS-SHHHHHHHHHHHHHHHHHHHHHH-EETTEE-SS CS
  Flagellin_N  99 snsdedrqslqaelqqLtdelnrianttsfNGekLla 135
                  sns +d +s+qae++q ++e++r+ ++t+fNG k+l+
   EHU00456.1 102 SNSASDIDSIQAEVNQRMQEIDRVTKQTDFNGIKVLN 138
                  **********************************997 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.096
                  HHHHHHHHHHHHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHH CS
  Flagellin_N  78 lselsdilqrlkelavaasndsnsdedrqslqaelqqLtdel 119
                  +++ ++++++ + l+ a++n   s++  + l++++++Lt + 
   EHU00456.1 226 IDKAIKAVDNQRSLLGASQNRFESTI--SNLNNTVTNLTAAR 265
                  44555555555555555555555554..44555555554443 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.047
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHH..HHHHH CS
  Flagellin_N  47 svslrsqiaglsqlvrnnslgisrlqtaqgals..els..dilqr 87 
                   ++++s i++l++ v+n + + sr+q a+ a +   +s  +ilq+
   EHU00456.1 244 QNRFESTISNLNNTVTNLTAARSRIQDADYATEvsNMSraQILQQ 288
                  5799999*******************9997543113331145555 PP

>> Flagellin_C  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1     0.003       6.7       9      27 ..      15      33 ..       9      45 .. 0.89
   2 ?    0.4   1.6      0.39   8.6e+02      23      69 ..      51     102 ..      43     115 .. 0.48
   3 ?    0.2   1.4      0.45     1e+03      37      53 ..     109     126 ..      76     145 .. 0.55
   4 ?   -3.4   0.1       5.8   1.3e+04      55      71 ..     174     190 ..     166     200 .. 0.52
   5 !  102.3   8.2     6e-33   1.3e-29       2      86 .]     224     308 ..     223     308 .. 0.98

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHHHHH CS
  Flagellin_C  9 tdldkvrselGavqnRles 27
                 ++l+k +s+lG++ +Rl+s
   EHU00456.1 15 NNLSKSQSSLGTAIERLSS 33
                 789**************87 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.39
                  HHHHHHHHHHHHHHCHHHHHHCHHCCHH.....HHHHHHHHHHHHHHHHHHH CS
  Flagellin_C  23 nRlesaitnlkaqsenlkaaesrledvD.....paeestrvtklqiliqasy 69 
                  nR++s+i+ l+ +  n +  +s  + +      +++   rv +l++++q s+
   EHU00456.1  51 NRFSSNINGLTVAARNANDGISLSQTAEgalteVNNNLQRVRDLTVQAQNSS 102
                  6666666666665555554443222221000001233344555555555554 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.45
                  CHHHHH.HCHHCCHHHHH CS
  Flagellin_C  37 enlkaa.esrledvDpae 53 
                  + ++a+  +r++++D  +
   EHU00456.1 109 DSIQAEvNQRMQEIDRVT 126
                  222222023444444444 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5.8
                  HHHHHHHHHHHHHHHHH CS
  Flagellin_C  55 strvtklqiliqasyal 71 
                      t+ ++ + +++++
   EHU00456.1 174 GQSGTTQNTSSTTGQTV 190
                  44444455555555444 PP

  == domain 5  score: 102.3 bits;  conditional E-value: 6e-33
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHH CS
  Flagellin_C   2 divdeaitdldkvrselGavqnRlesaitnlkaqsenlkaaesrledvDpaeestrvtklqiliqasyallaqanqlpqsllnlL 86 
                  + +d+ai+++d++rs lGa+qnR+es+i+nl+++++nl+aa+sr++d+D+a+e+++++++qil+qa++++laqanq+pq++l+lL
   EHU00456.1 224 ADIDKAIKAVDNQRSLLGASQNRFESTISNLNNTVTNLTAARSRIQDADYATEVSNMSRAQILQQAGSSVLAQANQVPQTMLSLL 308
                  579********************************************************************************98 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0034       7.7      24      51 ..      16      42 ..      13      53 .. 0.82
   2 ?    1.0   0.5      0.26   5.9e+02      42      51 ..      87      96 ..      71     130 .. 0.42
   3 ?    7.6   0.1    0.0023       5.2      12      51 ..     227     266 ..     223     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0034
  Snapin_Pallidin 24 elrqsQeeLleqldrlnekLkeleeaqe 51
                     +l +sQ+ L   ++rl++ L+ ++ a++
       EHU00456.1 16 NLSKSQSSLGTAIERLSSGLR-INSAKD 42
                     799*****************8.554444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.26
  Snapin_Pallidin 42 kLkeleeaqe 51
                     +L+++++++ 
       EHU00456.1 87 NLQRVRDLTV 96
                     3333333333 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0023
  Snapin_Pallidin  12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                        +++++d++ + l +sQ+   +++++ln+ +++l  a +
       EHU00456.1 227 DKAIKAVDNQRSLLGASQNRFESTISNLNNTVTNLTAARS 266
                      56899**************************999888776 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   0.00011      0.25      25      74 ..      81     129 ..      64     131 .. 0.88
   2 ?    0.9   0.0      0.26   5.8e+02      64      77 ..     248     261 ..     221     275 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
     BLOC1_2  25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqv 74 
                 L+++N++  +++ +l+ +a++ +++++++++ ++e+++ +q+id++ kq+
  EHU00456.1  81 LTEVNNNL-QRVRDLTVQAQNSSNSASDIDSIQAEVNQRMQEIDRVTKQT 129
                 66777664.79***********************************9997 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
     BLOC1_2  64 lqqidqiekqvteL 77 
                  + i +++++vt L
  EHU00456.1 248 ESTISNLNNTVTNL 261
                 22233333333333 PP

>> DUF3829  Protein of unknown function (DUF3829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.1    0.0041       9.2     189     269 ..      44     117 ..      12     133 .. 0.73
   2 ?    7.2   0.2    0.0014       3.2     197     256 ..     225     285 ..     216     306 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0041
     DUF3829 189 aklkkklddlekaleklekaskeekrkkpalesfkssakeflaaarkiirrirdkepysdsdkellksadsvegspeallr 269
                 a+ ++  + +++ ++ l  a ++ ++      s+ + a+++l+++++ ++r+rd + +++++++   sa++ +  ++++ +
  EHU00456.1  44 AAGEAIANRFSSNINGLTVAARNAND----GISLSQTAEGALTEVNNNLQRVRDLTVQAQNSSN---SASDIDSIQAEVNQ 117
                 55566667777777777777777755....4799999999999999999999999988877754...44444444444443 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0014
     DUF3829 197 dlekaleklekaskeekr....kkpalesfkssakeflaaarkiirrirdkepysdsdkellk.s 256
                 d    + k+ ka  ++++    +++ +es +s++++ +++++   +ri+d +++++ +++ +  +
  EHU00456.1 225 D----IDKAIKAVDNQRSllgaSQNRFESTISNLNNTVTNLTAARSRIQDADYATEVSNMSRAqI 285
                 3....3333333333333777799****************************9999998876653 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   0.00069       1.5      57     116 ..      71     128 ..      55     136 .. 0.80
   2 ?    3.2   0.2     0.047   1.1e+02      44      93 ..     226     277 ..     218     300 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00069
       Muted  57 pkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflke 116
                  ++ ++ +  L+e+n++l+ +++ + + ++   ++  ++ + +q++ ++r +e + + k+
  EHU00456.1  71 ISLSQTAEGALTEVNNNLQRVRDLTVQAQNS--SNSASDIDSIQAEVNQRMQEIDRVTKQ 128
                 5677888999*******99999999888888..555567999999999999999988776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.047
       Muted  44 ikklvnelkeq..llpkclesmkenLselnkkleaalekverllqkeleeek 93 
                 i k ++ +++q  ll    ++ ++++s+ln+ + +++   +r+++ +  +e 
  EHU00456.1 226 IDKAIKAVDNQrsLLGASQNRFESTISNLNNTVTNLTAARSRIQDADYATEV 277
                 5555555554411233334446666777776666666666666666444443 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.3   0.00054       1.2      83     149 ..      73     139 ..      58     149 .. 0.89
   2 ?    1.8   0.4     0.067   1.5e+02     111     162 ..     250     301 ..     216     308 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00054
  HAUS-augmin3  83 LeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraenaetnavLqq 149
                   L q ++ +  e +  l+r   L+vqa + ++  ++ ++ + e++++++e+++ ++++ ++  +vL++
    EHU00456.1  73 LSQTAEGALTEVNNNLQRVRDLTVQAQNSSNSASDIDSIQAEVNQRMQEIDRVTKQTDFNGIKVLNT 139
                   6667777778888999****************************************99988888765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.067
  HAUS-augmin3 111 lqqelrkleeeekeakkklkeaqeelraenaetnavLqqlteeakqlaeyfe 162
                     ++l++  ++ ++a+ ++++a+ ++++ n    + Lqq  +++  +a++ +
    EHU00456.1 250 TISNLNNTVTNLTAARSRIQDADYATEVSNMSRAQILQQAGSSVLAQANQVP 301
                   3333334444455555666666666666666666666666666666665554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   3.8     0.032        72      33      63 ..      11      43 ..       4     136 .. 0.65
   2 ?    2.4   0.1     0.066   1.5e+02      51      82 ..     234     265 ..     221     299 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.032
     DUF1664 33 fvTkrslsdavesvskqleqvsesl..aatkrh 63
                 vT+ +ls+  +s+++ +e++s+ l  +++k++
  EHU00456.1 11 LVTQNNLSKSQSSLGTAIERLSSGLriNSAKDD 43
                689999999999999999999965411455543 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.066
     DUF1664  51 eqvseslaatkrhLssridrvdkkldeqkeis 82 
                 ++  + l a +++++s i ++++++ + +++ 
  EHU00456.1 234 DNQRSLLGASQNRFESTISNLNNTVTNLTAAR 265
                 22233333333444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2244.00
//
Query:       EHU00457.1  [L=465]
Description: FliD family flagellar hook-associated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-59  201.1  20.6    1.8e-59  201.1  20.6    2.6  2  FliD_C          Flagellar hook-associated protein 2 C-terminu
    5.6e-19   68.6  14.0    5.6e-19   68.6  14.0    5.3  4  FliD_N          Flagellar hook-associated protein 2 N-terminu
  ------ inclusion threshold ------
      0.016   15.3   1.2      0.016   15.3   1.2    3.7  4  Laminin_II      Laminin Domain II
      0.026   14.6   0.3       0.11   12.5   0.3    2.1  1  TolA_bind_tri   TolA binding protein trimerisation


Domain annotation for each model (and alignments):
>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   9.6       3.6   1.6e+04      64     217 ..      16     170 ..      14     180 .. 0.67
   2 !  201.1  20.6     4e-63   1.8e-59       1     239 [.     223     452 ..     223     453 .. 0.98

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 3.6
                 HHCCCCCCCCCS..-----XXXXXXXXTTTTXHHHHHHHHHHHHHHHSXXXSSSXXSTGGGTEE.EXTT.TXXEEEXHHHHHHHHH.HHHHHHHHHHTT CS
      FliD_C  64 NalvteinektkekedeikdeekaksGaLrgdstlrnilsqLrsslssevesgeilsladlGis.tnkn.kGkLelDeekLkkalk.enpssveelFsg 159
                 N+l  ++++  + k + i++++++ ++ L+  + +++ ls+L++   +    ++ +++a   ++ tn + + +L    +  + +++ ++++s ++l+s+
  EHU00457.1  16 NTLYSSMESAEQTKLTPITKQQASYNAQLTAWGVVKTGLSKLQTAAAA---LQNASTIAATKVTsTNTAfTATLASKASAGNYSIEvTQLASSQSLLSK 111
                 777777777777777888889999999999999999999999988888...344444444444413333447777666666666666777788888888 PP

                 TSS.......SXSHHHHHHHHHHHHHSTT..SHHHHHHHHXXXXHHHHHHHHHHHHHCH CS
      FliD_C 160 stsqektvtsdsglatrlenllksyvkss.ngtlqtasknltkqikdldkkiedldkrl 217
                 s s+++t   d+ la+r+  + +s  ks+ + tl +++++l +  + ++k++ +++ ++
  EHU00457.1 112 SASSKDTDLGDQSLASRTITISQSGQKSPlTVTLSKDQTSLSDIRDAINKQQGSVNASI 170
                 88888888888888888665555555444234555667777777777777776666655 PP

  == domain 2  score: 201.1 bits;  conditional E-value: 4e-63
                 -B-EEEEETTEEEEESSSEEESSSTTEEEEE-S-E-CCE-EEEEEEC-SCCCCCCHCHHHHHHHHCCCCCCCCCS..-----XXXXXXXXTTTTXHHHH CS
      FliD_C   1 aqnAeftvdgiavtrstNtisdvldGvtlnLkkatedgeeltlsvetDtdkikealkeFVdaYNalvteinektkekedeikdeekaksGaLrgdstlr 99 
                 a++A+++++g+++trs+Nt++d+ +GvtlnL+k+t+++++ tl+v+tD++ ++ a++ +VdaYN+l t+i ++tk++  +  +++++ +G L gd tlr
  EHU00457.1 223 AKDAQLKINGVSITRSSNTVTDAPEGVTLNLTKTTAANTPETLTVATDNQPMTAAIQAYVDAYNSLQTTIGNQTKYTAVKAGESQSSGNGDLLGDNTLR 321
                 89**************************************************************************9999999**************** PP

                 HHHHHHHHHHHSXXXSSSXXSTGGGTEEEXTTTXXEEEXHHHHHHHHHHHHHHHHHHHTTTSS.......SXSHHHHHHHHHHHHHSTT.SHHHHHHHH CS
      FliD_C 100 nilsqLrsslssevesgeilsladlGistnknkGkLelDeekLkkalkenpssveelFsgstsqektvtsdsglatrlenllksyvkssngtlqtaskn 198
                 ni+++Lrs+lss ++sg++ sl++lGi+++ n GkL +D++kL+kal+++p +v ++++g+++       ++g+at+ +n l+++++s+ g++q+a++ 
  EHU00457.1 322 NIQTSLRSQLSSGQASGNLTSLSQLGITQDVN-GKLTVDSTKLDKALTNQPTDVLNFLTGDGK-------TTGFATQANNKLTQILASD-GQVQNATNG 411
                 ************999****************9.***************************988.......****************999.********* PP

                 XXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH CS
      FliD_C 199 ltkqikdldkkiedldkrletleerlkkqfaalekavskln 239
                 +++ +k+l ++++++++++ ++++r+k+qf++l ++vs++ 
  EHU00457.1 412 INTSLKKLYDQYDEVNSQIAATMARYKTQFTSLSTLVSSMT 452
                 **************************************996 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6  14.0   1.3e-22   5.6e-19       2      97 .]      12     106 ..      11     106 .. 0.96
   2 ?   -6.5  12.5         4   1.8e+04      23      76 ..     145     196 ..     123     279 .. 0.64
   3 ?   -0.5   2.9      0.46   2.1e+03      30      52 ..     278     305 ..     264     366 .. 0.60
   4 ?    4.6   5.6     0.012        53      20      86 ..     392     457 ..     384     463 .. 0.64

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.3e-22
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXXGGGGGXEEEEECSTTTEEEEEETTS-SEEEEEEEEE--BEE CS
      FliD_N   2 glDtdslvkqlmkaerakldkleqkktklewkqsayrelnsklsnlksalsalsksstfsakkatssdesvvtatassgaaagsysieVkqlAtaa 97 
                 +lD+++l +++ +ae++kl+++++++++++++ +a++ +++ ls+l++a++al+++st++a+k+ts+++ ++tat  s+a+ag+ysieV+qlA+++
  EHU00457.1  12 NLDLNTLYSSMESAEQTKLTPITKQQASYNAQLTAWGVVKTGLSKLQTAAAALQNASTIAATKVTSTNT-AFTATLASKASAGNYSIEVTQLASSQ 106
                 79**********************************************9999*99****9*99999976.67*********************986 PP

  == domain 2  score: -6.5 bits;  conditional E-value: 4
                 XXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXXGGGGGXEEEEECST.TTEEEE CS
      FliD_N  23 leqkktklewkqsayrelnsklsnlksalsalsksstfsakkatssde.svvtat 76 
                 l +++t+l+  ++a+++ + ++++ + +++   +++ + + +a  s + +++t++
  EHU00457.1 145 LSKDQTSLSDIRDAINKQQGSVNASIIKAD---DNTYYLSLTARDSGTaNAMTVS 196
                 444444444444444444444444333331...1222222233333333333333 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.46
                 XXXXHHHHHHHHHHHHHHHHHH.....H CS
      FliD_N  30 lewkqsayrelnsklsnlksal.....s 52 
                 +++  +ay++l++ + n  + +     +
  EHU00457.1 278 IQAYVDAYNSLQTTIGNQTKYTavkagE 305
                 4555566666666666644422222220 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.012
                 XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHH.XX.GGGGGXEEEEECSTTTEEEEEETTS-SEEE CS
      FliD_N  20 ldkleqkktklewkqsayrelnsklsnlksalsal.sk.sstfsakkatssdesvvtatassgaaagsy 86 
                  +kl+q  ++  + q+a + +n++l++l+++++++ s+ ++t++  k++ +    ++  +ss +++g+y
  EHU00457.1 392 NNKLTQILASDGQVQNATNGINTSLKKLYDQYDEVnSQiAATMARYKTQFT---SLSTLVSSMTQTGNY 457
                 57899999999999****************996552223444433333322...222222333455555 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       0.3   1.4e+03      21      69 ..      56     104 ..      38     134 .. 0.65
   2 ?    1.4   0.2     0.064   2.9e+02      18      60 ..     137     176 ..     126     186 .. 0.77
   3 ?   -0.7   0.2      0.29   1.3e+03      10      41 ..     263     293 ..     235     307 .. 0.72
   4 ?   15.3   1.2   3.5e-06     0.016       1      77 [.     391     464 ..     388     465 .] 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.3
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTT CS
  Laminin_II  21 plsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklap 69 
                 +l++    +++    ++++v  tn    +     ++A++ + ++++la 
  EHU00457.1  56 KLQTAAAALQNASTIAATKVTSTNTAFTATLASKASAGNYSIEVTQLAS 104
                 4555444444444444566777777777777777777777777777663 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.064
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  18 qlaplsqnlentkeklseinrsveetnekvkdankairdArrs 60 
                 q+ pl + l++ + +ls i++    +n++  + n  i  A ++
  EHU00457.1 137 QKSPLTVTLSKDQTSLSDIRDA---INKQQGSVNASIIKADDN 176
                 78899999************99...666666666666666665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.29
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsve 41 
                 et   v  + +p+ + ++   + ++++++++ 
  EHU00457.1 263 ET-LTVATDNQPMTAAIQAYVDAYNSLQTTIG 293
                 33.35777778888888888888888888754 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 3.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHH CS
  Laminin_II   1 skelaaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklke 77 
                 +++++++++ +  +v++ ++++++ l+++ +++ e+n++   + + +  ++++  + ++ v+ ++++ + L +++ +
  EHU00457.1 391 ANNKLTQILASDGQVQNATNGINTSLKKLYDQYDEVNSQ---IAATMARYKTQFTSLSTLVSSMTQTGNYLTQQFAK 464
                 57888899999999************************9...7777889999999999***********99999876 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   2.5e-05      0.11       8      73 ..     394     455 ..     390     457 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
  TolA_bind_tri   8 rLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkleagg 73 
                    +L +il++      ++q+  +  ++ l++L  q +e + q+  +  r + +++ l +++++++++g
     EHU00457.1 394 KLTQILAS----DGQVQNATNGINTSLKKLYDQYDEVNSQIAATMARYKTQFTSLSTLVSSMTQTG 455
                    56677766....56889*******************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1403  (0.0782531); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.49
# Mc/sec: 2880.47
//
Query:       EHU00458.1  [L=136]
Description: flagellar protein potentiates polymerization [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-38  131.6   0.1    1.7e-38  131.4   0.1    1.0  1  FliS      Flagellar protein FliS


Domain annotation for each model (and alignments):
>> FliS  Flagellar protein FliS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.1   9.7e-43   1.7e-38       2     114 ..       8     125 ..       7     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 9.7e-43
                 GGCSH....CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH.HHHHHTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHCT-HH CS
        FliS   2 qaYkq....nsvetaspeklvlmLydgalkflkrakeaieekdiekkgeaiskaqdIi.seLrasLdlekggeiaknLaalYdyiirrlleanlkkdae 95 
                 qaY+q    ++v +asp++lv++L+dgal+++k+a   ie++di  kg+a+ska++Ii ++Lra L++e gg+i++nL++lY+y+ rrll+ nl++d e
  EHU00458.1   8 QAYAQvgveSAVLSASPHQLVVLLFDGALSAMKKAAILIEQGDIPGKGNALSKAINIItNGLRAGLNHEVGGKISANLDDLYEYMTRRLLQTNLNNDLE 106
                 8999999999************************************************99*************************************** PP

                 HHHHHHHHHHHHHHHHHHH CS
        FliS  96 kldeviklleelreaWkei 114
                 ++ ev++ll+++++aWk+i
  EHU00458.1 107 AITEVEGLLNNIADAWKQI 125
                 *****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1094.87
//
Query:       EHU00459.1  [L=119]
Description: FliT family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-20   72.3   1.0    5.6e-20   71.9   1.0    1.2  1  FliT      Flagellar protein FliT


Domain annotation for each model (and alignments):
>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   1.0   3.1e-24   5.6e-20       1      85 []      21     106 ..      21     106 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 3.1e-24
                 HHHHHHCT-HHHHHHHHHHHHHHHHHHHCS-.-ST--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHH CS
        FliT   1 mleaAragdWdelaaleaerqqlverlreld.aaplspaereekrellrrilandaeirallqprldelqkllgalrrqrkannaY 85 
                 mle Ar+g+Wdel ++e  ++  ver+++++ a+ ls+ +r+++r +l++il+n+  +++ll +r++el++l++++ +q++   +Y
  EHU00459.1  21 MLENARQGQWDELLSCESTYVSSVERVARDNdASALSALQRAQIRPVLEQILKNETTLKTLLGERMSELRSLVTTSTQQHNIVSSY 106
                 9********************************************************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 881.03
//
Query:       EHU00460.1  [L=152]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-50  166.8   0.1    1.2e-49  166.5   0.1    1.1  1  YedD      YedD-like protein


Domain annotation for each model (and alignments):
>> YedD  YedD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   0.1   6.8e-54   1.2e-49       1     105 [.      24     128 ..      24     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 6.8e-54
                 -------TTT-EEEE--S--TTSSSTT-EEEEEE-TTSEEEEEEESSSEEEEEEEEEEETTEEEEEETT--EEEEEEETTEEEETTEEEEEESS--HHH CS
        YedD   1 vvktPaPaelaGyWqskgPqkklvspeaiaslivtkeGdtldcrqWqrviakPgkltrldddlvnvtkklevyelelegdeleydgltlervdrptaec 99 
                 +v+tPaPa+l+G+Wq++gPq++l+s++ai+sli+ ++G tldcrqWqrviakPgklt+l+ d+vnvt++l+++ l+l+g+el+ydgltl++vdrpt+ec
  EHU00460.1  24 AVQTPAPANLQGNWQTVGPQSNLISDKAIGSLIINADGSTLDCRQWQRVIAKPGKLTQLNGDYVNVTRQLRIMTLDLDGGELDYDGLTLRKVDRPTVEC 122
                 699************************************************************************************************ PP

                 HHHHHH CS
        YedD 100 qdalak 105
                 q+al++
  EHU00460.1 123 QKALQE 128
                 ***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1194.06
//
Query:       EHU00461.1  [L=107]
Description: hypothetical protein CKS_2654 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.25   11.6   1.1        6.1    7.2   0.2    2.1  2  MHB       Haemophore, haem-binding


Domain annotation for each model (and alignments):
>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2   0.00034       6.1      16      50 ..       9      43 ..       3      53 .. 0.84
   2 ?    3.6   0.0    0.0043        77      42      55 ..      77      90 ..      53      94 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00034
         MHB 16 aastsaYLdthPdvnqaltslkgqprdqaraavka 50
                a++ + ++++h d ++al +l++q++ +a+ ++++
  EHU00461.1  9 AQARQMFFTAHADFQAALDELTEQDARAANMSLRE 43
                567788999***************99988887775 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0043
         MHB 42 dqaraavkaYfdan 55
                  a++a++aY+ ++
  EHU00461.1 77 AVAAEAIEAYLRSH 90
                44445555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 864.72
//
Query:       EHU00462.1  [L=98]
Description: hypothetical protein CKS_2653 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-28   97.6   9.8    5.2e-28   97.4   9.8    1.0  1  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
  ------ inclusion threshold ------
      0.071   13.1   0.3      0.087   12.9   0.3    1.2  1  DUF4054          Protein of unknown function (DUF4054)


Domain annotation for each model (and alignments):
>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   9.8   5.8e-32   5.2e-28       1      85 [.       1      85 [.       1      86 [. 0.99

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 5.8e-32
  Anti-adapt_IraP  1 MknlilelLvklakkeeeskeLtaqVealelllsallltlskekvqeliesvekainsalessdevlksdaeLLlkqinrllsva 85
                     M++l++++L+klak+++++keLtaqVea++ll++all ++++++  +++e+v++ai +a++ss+e+++sd++LLl+++nrll+va
       EHU00462.1  1 MRQLVIDILLKLAKMDVDAKELTAQVEAQSLLVAALLVQAKQDNALTISETVQDAIVTASRSSSEFMQSDIDLLLTHLNRLLAVA 85
                     9*********************************************************************************997 PP

>> DUF4054  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   9.7e-06     0.087      15      73 ..       5      63 ..       1      72 [. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.7e-06
     DUF4054 15 aiqawldlAallvsakrfgklreqalallaAHll.aadgraaaaggaggaaagrvtsasv 73
                +i++ l+lA++ v+ak+ ++ + +a  ll+A ll +a+++ a +  +++++a  ++s s+
  EHU00462.1  5 VIDILLKLAKMDVDAKELTA-QVEAQSLLVAALLvQAKQDNALTISETVQDAIVTASRSS 63
                68999***************.888888888888845555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 794.03
//
Query:       EHU00463.1  [L=79]
Description: macrophage survival protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-18   66.9   0.1    1.9e-18   66.5   0.1    1.1  1  DinI      DinI-like family


Domain annotation for each model (and alignments):
>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.1   1.1e-22   1.9e-18       3      63 .]      17      76 ..      16      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.1e-22
                THHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHTHHHH- CS
        DinI  3 gaiealeaELskRiqevfPdaevrvrkasanglsveGaskedkeriseiLQetwesADdWl 63
                ga++++ aEL+kR+++vfPd+ev+v+++++n+++++  sk+dk ++ +++ e++++A+ Wl
  EHU00463.1 17 GARDMILAELQKRVHRVFPDIEVKVKPMERNAIETD-LSKNDKATVARLVDEMFDEAEFWL 76
                89**********************************.***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 615.64
//
Query:       EHU00464.1  [L=88]
Description: hypothetical protein CKS_2651 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.012   15.5   0.8      0.013   15.4   0.8    1.0  1  Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)


Domain annotation for each model (and alignments):
>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.8   7.1e-07     0.013     103     176 ..      10      83 ..       1      84 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-07
  Bacillus_HBL 103 llellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgkikk 176
                    ++ l +  +++ +  +++++  + L++  l++++ + + + +++ +++ l+ ++  +++l+++i+d++ +i++
    EHU00464.1  10 KTDYLRDVASQLKEMRHYAQTNTETLSAHWLAFDAGEYKDEGNAARIDALLNKQGTLLEDLEKAIQDIEIEINH 83 
                   45678889999999999***********99999999999999***************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 729.63
//
Query:       EHU00465.1  [L=65]
Description: hypothetical protein CKS_2650 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      100  (0.00557756); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 537.49
//
Query:       EHU00466.1  [L=286]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-19   68.7   0.3    7.9e-19   68.1   0.3    1.3  1  DEDD_Tnp_IS110  Transposase
    9.5e-15   54.7   0.3    2.3e-14   53.5   0.3    1.6  1  Transposase_20  Transposase IS116/IS110/IS902 family
  ------ inclusion threshold ------
      0.053   13.5   0.0      0.087   12.8   0.0    1.4  1  Stomagen        Stomagen
      0.088   11.8   0.0       0.14   11.1   0.0    1.3  1  DUF913          Domain of Unknown Function (DUF913)
       0.11   12.7   2.1       0.22   11.8   1.7    1.6  1  TetR_C_30       Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.3   2.2e-22   7.9e-19       1     146 [.       9     154 ..       9     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.2e-22
  DEDD_Tnp_IS110   1 vGiDvakdkhdacvidaegkvllservpndeeglealleklaakagevlvvveatghygallvaflleagitvvvvnplavkrlrklylrkaKtD 95 
                     vGiDv+k + d ++ +     + +++v nd +g++ ++++ ++k +  lv +eatg   a ++ +l++ag+++++vnp++++ +++++   aKtD
      EHU00466.1   9 VGIDVSKATLDLAASS----AIEQFSVCNDADGFDLIIAE-LRKRDVELVLMEATGGLEAAVACALQAAGFEIAIVNPRQARDFARAMGYLAKTD 98 
                     8**********99986....78889***************.999999************************************************ PP

  DEDD_Tnp_IS110  96 akDAkvIAdll....rdrgrlrplkl.ddeayaeLrqltrqredlvkertrlknrl 146
                     ++DAk +A+++    r+++r r+++  +d++ + L  ++ +r++l+++ +++ nrl
      EHU00466.1  99 RIDAKALAQMAevinRHPERDRFIRAlPDAERQVLNAMVVRRRQLIAMQVAERNRL 154
                     ********99755444677777775438888899*******************998 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.3   6.3e-18   2.3e-14       2      71 ..     196     263 ..     195     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 6.3e-18
  Transposase_20   2 elLesipGiGpvtaaallaeigdlrrfksakqlaayaGlapvenqSGkkkrrgriskrGnrrlRraLyea 71 
                     e+L+si+GiG++t aallae+++l    +++++ a++G+apv+++SG++++ +r++ +G++ +R+aLy++
      EHU00466.1 196 ERLSSIKGIGTMTIAALLAEVPEL-GKLTRREISALVGVAPVNRDSGTMRG-RRTIFGGRAGVRTALYNG 263
                     78**********************.999*********************99.899999**********86 PP

>> Stomagen  Stomagen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.087       3      37 ..     246     282 ..     244     286 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
    Stomagen   3 RRlliGstaP..tCtYnECrgCrtkCraeqvPvdand 37 
                 RR++ G +a   t  Yn C g +  Cr    Pv   d
  EHU00466.1 246 RRTIFGGRAGvrTALYNGCTGFKAWCRSPSAPVKWAD 282
                 999*****9865777*****************98665 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.8e-05      0.14     211     257 ..     178     224 ..     157     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.8e-05
      DUF913 211 esdgdlasnlGssfdELvRhhpsLktaiikavikmlarvvelgkeka 257
                 + d d+ +++G+ f EL    +s+k   +  + ++la+v elgk  +
  EHU00466.1 178 RVDDDMKNHIGNHFRELSERLSSIKGIGTMTIAALLAEVPELGKLTR 224
                 47899**************************************9766 PP

>> TetR_C_30  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.7   6.1e-05      0.22       7      96 ..      73     162 ..      68     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
   TetR_C_30   7 llelaeeggeggrafarllarvysepdeelrellaeeydpvarrf..iaalrralPdlpeeelfwrlhfalgallftladtgrldilsggec 96 
                  +e+a  ++++ r far +++++   ++++ + + +++++v+ r   ++ + ralPd++++ l   ++     +++ +a+++rl  + +++ 
  EHU00466.1  73 GFEIAIVNPRQARDFARAMGYLAK--TDRIDAKALAQMAEVINRHpeRDRFIRALPDAERQVLNAMVVRRRQLIAMQVAERNRLYLAHPQSR 162
                 678889999***************..899999999999999988655899*************99999999999999999999886655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2238.70
//
Query:       EHU00467.1  [L=107]
Description: hypothetical protein CKS_2648 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 859.86
//
Query:       EHU00468.1  [L=69]
Description: hypothetical protein CKS_5834 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 569.14
//
Query:       EHU00469.1  [L=53]
Description: OspG family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 460.78
//
Query:       EHU00470.1  [L=406]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-56  192.4   0.6    1.4e-56  191.9   0.6    1.2  1  DDE_Tnp_ISL3    Transposase
    2.8e-12   45.8   0.0    9.1e-12   44.2   0.0    2.0  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
    5.4e-10   39.8   9.5    5.4e-10   39.8   9.5    1.9  2  zf-ISL3         zinc-finger of transposase IS204/IS1001/IS109
  ------ inclusion threshold ------
      0.062   13.3   0.1       0.12   12.4   0.1    1.4  1  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
      0.068   13.3   0.1       0.18   11.9   0.1    1.6  1  FANCI_S1-cap    FANCI solenoid 1 cap


Domain annotation for each model (and alignments):
>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.6     4e-60   1.4e-56       2     238 ..     158     393 ..     157     395 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 4e-60
  DDE_Tnp_ISL3   2 giDEislkkghkyvtvvvdllvdggrlldilpgRkketlkafleslsekerekveavvmDmsaayksavkealPnAk..ivvDrFHvvklanealde 96 
                    +DE+++kkgh+y+tv++d    +gr l+ +++R +e l ++l++l++ + e +++++mDm+a+y++a++ +lP A+  i +DrFHv k+++e +d+
    EHU00470.1 158 NVDEVAFKKGHRYITVISDR---EGRALALTDDRGTESLASYLRTLTDGQLEAIKTFSMDMNAGYIRAARIHLPGAVgkIAFDRFHVAKQLGEIVDK 251
                   59****************98...999********************999***************************777****************** PP

  DDE_Tnp_ISL3  97 vRrreqkelreekrkklkrsrrlllknpenlteeqkqrldelleaspelekaYelkeelrevfrkkdkeearkalkewiekaersglkefkklaktl 193
                   +R++e+ +l+ + r++ k++r+l+  +++ +te ++++l +l e+ + +++ + lke  ++++++    e r+ +++wi+ a++++++ +k++a t+
    EHU00470.1 252 TRQTEHPRLPVDSRRQAKGTRFLWQYSEKWMTEPRQEKLTWLREQMQLTSQCWTLKELAKDIWNRPWSTERRTDWQQWIALAKSCDVPVMKNMAGTI 348
                   *********999****************************************************8889999************************** PP

  DDE_Tnp_ISL3 194 knhreeIlnyfdsrlsngpvEgiNnkikaikrrayGfrnfenfrl 238
                    ++  +Iln++++++sng +E++N+ki++++ +a+G+rn e+f+l
    EHU00470.1 349 SKRLYGILNAMRHNVSNGNAEALNSKIRLLRIKARGYRNRERFKL 393
                   *******************************************86 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   2.6e-15   9.1e-12       2      52 .]      92     141 ..      91     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 2.6e-15
  HTH_Tnp_ISL3   2 elPwarrrsriTlrleayilelllesrsvkavArqlgvSwtTVwrildryv 52 
                   ++Pwa ++sr+Tl++e ++l  l+ s +v av +ql +Sw+ V  i+ r+v
    EHU00470.1  92 PVPWAGAGSRYTLLFESFVLSWLKIS-TVDAVRKQLKLSWNAVDGIMTRAV 141
                   69************************.********************9986 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   9.5   1.5e-13   5.4e-10       5      47 .]      45      86 ..      43      88 .. 0.93
   2 ?   -2.3   0.0       2.1   7.6e+03      20      36 ..     278     294 ..     276     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.5e-13
     zf-ISL3  5 CPnCgsk.tvvkhgkkerrvrhlpiggkrvyLrlrkrRyrCkeC 47
                CP+Cg++ +v++h   +r++rhl+++++ ++++++++R+ C+++
  EHU00470.1 45 CPTCGQQcPVHDHR--HRKWRHLDTCQFMTVVEANVPRVMCPDH 86
                *******9988886..*************************995 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
     zf-ISL3  20 errvrhlpiggkrvyLr 36 
                   +++ +p ++k ++Lr
  EHU00470.1 278 SEKWMTEPRQEKLTWLR 294
                 56899999999*9*997 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.3e-05      0.12      16      28 ..      39      51 ..      20      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.3e-05
  PhnA_Zn_Ribbon 16 dgallvCpeCahE 28
                     ++ll+Cp+C+ +
      EHU00470.1 39 KNTLLICPTCGQQ 51
                    699*******988 PP

>> FANCI_S1-cap  FANCI solenoid 1 cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     5e-05      0.18       5      31 ..     181     207 ..     178     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
  FANCI_S1-cap   5 IlsLaaedsteeLqkfLqtLkedeLte 31 
                    l+L ++  te L ++L+tL++++L +
    EHU00470.1 181 ALALTDDRGTESLASYLRTLTDGQLEA 207
                   68999********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3051.15
//
Query:       EHU00471.1  [L=84]
Description: hypothetical protein CKS_2645 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-18   65.9   0.4    4.2e-18   65.8   0.4    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.4   2.3e-22   4.2e-18      53     130 .]       2      84 .]       1      84 [] 0.95

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 2.3e-22
   Caudo_TAP  53 pawvedk...keeqiqqAeqekqqllaqAseqiaplq..davdlgiatdeEkaaLlawkkYrvlLnrvDvslapdieWPeqPe 130
                 paw + +   kee+++ A++++++l++qA++ +++ q   ++++g++  ++ aa++ w +Y+++L +vD+s+apdi WP++P+
  EHU00471.1   2 PAWIDLPpptKEELVNTAKNTQSALISQANNYMNSRQwpGKAAVGRLKGDDLAAYNTWLDYLDALYAVDTSKAPDISWPQKPS 84 
                 7788888888************************99988******************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 629.92
//
Query:       EHU00472.1  [L=465]
Description: hypothetical protein CKS_2644 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3883.69
//
Query:       EHU00473.1  [L=374]
Description: hypothetical protein CKS_2643 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-39  134.9  13.0    4.2e-39  134.2  13.0    1.3  1  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2  13.0   2.3e-43   4.2e-39       3     254 ..      68     334 ..      66     335 .. 0.91

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 2.3e-43
  Baseplate_J   3 eyLdrlgelevgvtRkpAtkAsgtvtftgeag...tvIpaGtrvsta.dglsfatted.............titagqgsatvkvtaeeaGaagNvpag 83 
                    Ld +  +++g+tR pAt+A+g+vtf++ ++   ++I  G++v+t+ +++++ ++ d             +++ag  s+ v+v+a++aGaagN++ag
   EHU00473.1  68 SDLDTWL-ADYGFTREPATYATGPVTFSRFTAtnaALITIGSQVTTNdGTQTYNVILDtgnanysaaqggyVVAAGVASVIVPVQAVTAGAAGNASAG 164
                  6799999.559*****************9999999************88899***99999************************************** PP

  Baseplate_J  84 tsllldtaiagiqsvavantkvssgGadiEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwngpGtVkv...villdng.glPt 176
                  t++++   i+gi++v +an++  ++Gad+Esd+a r+R++l + + ++ ++ ++ ++++ +v qgV++  v ++ n +G  ++   + ++d+g g P+
   EHU00473.1 165 TVTTVVGSIPGIDTVNNANAF--ANGADAESDDAARARFRLWIASLSK-ATLSAIEYAIASVkQGVSYKVVENQ-NYAGATQYgyfYAVVDDGsGAPS 258
                  ******************966..*************************.899**********999998666666.5555544222233445556**** PP

  Baseplate_J 177 aellakVqayiseglrPvtaevtvlaptekavnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqiea 254
                  ++ l +V ++i +++r  t +++v++pt++++ni +t++ +++ + +++++ v++ai++y+++++  g+ + l++++a
   EHU00473.1 259 SAFLSSVYTAI-DAVRGATITFSVFGPTVVTANIAMTITTDPSVTHSDIVALVNTAITNYIATLTL-GQSLPLTKLSA 334
                  ***********.*************************99************************777.99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2966.58
//
Query:       EHU00474.1  [L=121]
Description: hypothetical protein CKS_2642 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   16.6   0.0     0.0074   16.4   0.0    1.2  1  DUF2634   Protein of unknown function (DUF2634)
  ------ inclusion threshold ------
       0.15   11.8   0.0       0.17   11.7   0.0    1.3  1  GPW_gp25  Gene 25-like lysozyme


Domain annotation for each model (and alignments):
>> DUF2634  Protein of unknown function (DUF2634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.3e-07    0.0074       9      72 ..      11      74 ..       6     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.3e-07
     DUF2634  9 efvlddngklkivdglEalkqwiykalkTeryryliYsenYGveledligkkys.keyveseikr 72
                ++ + ++g+l  v+g E  kq i + l T+ ++ l+++++YG  l + +g++ + +e++   + +
  EHU00474.1 11 DLSVSPSGDLLSVTGTERRKQKILRRLITNPGE-LVFHPEYGAGLGQKVGESVNiNEWKALILGQ 74
                56678899*************************.****************998855555555544 PP

>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.9e-05      0.17       9      47 ..      31      70 ..      23     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                HHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--.CHHHHH CS
    GPW_gp25  9 rdleiLLntfpgervsvlnyGlpllallfasls.edreri 47
                +++   L t+pge v+ ++yG +l + + +s + ++++++
  EHU00474.1 31 QKILRRLITNPGELVFHPEYGAGLGQKVGESVNiNEWKAL 70
                566667889*******************999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1054.49
//
Query:       EHU00475.1  [L=199]
Description: phage baseplate assembly protein V [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1887.50
//
Query:       EHU00476.1  [L=372]
Description: hypothetical protein CKS_2640 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3065.31
//
Query:       EHU00477.1  [L=323]
Description: hypothetical protein CKS_2639 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.03   13.9   0.0    1.7  2  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.7e-06      0.03      24      80 ..      37      91 ..      33     108 .. 0.83
   2 ?   -3.5   0.0      0.43   7.6e+03      29      49 ..     255     275 ..     253     283 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-06
  Phage_P2_GpU 24 aeherlggrpalqfvGpgeetitlsgvlfpeltggreeleaLramaeagealpLvlG 80
                   +h+++ggr  +  +G + + it sg +  +    +++++ L++m +age l++ l+
    EHU00477.1 37 VTHQMIGGRRLVDVLGVEYDPITWSGIFTGDT--TSSRVSMLEQMRDAGETLTMTLS 91
                  68**************************9777..66778889999999999998865 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.43
  Phage_P2_GpU  29 lggrpalqfvGpgeetitlsg 49 
                   +++  ++  + +g +++tlsg
    EHU00477.1 255 VNKNVRTGQTANGVKSVTLSG 275
                   555555556666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2746.39
//
Query:       EHU00478.1  [L=783]
Description: putative phage-related tail transmembrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.03   14.0   0.6       0.13   11.9   0.1    2.1  2  BAR_3         BAR domain of APPL family
       0.06   12.5   0.3       0.14   11.2   0.3    1.6  1  RmuC          RmuC family
       0.06   13.4   0.4        0.2   11.7   0.4    1.8  1  Laminin_II    Laminin Domain II
       0.15   10.9   0.1       0.29   10.0   0.1    1.4  1  Spc7          Spc7 kinetochore protein
       0.18   11.3   2.0       0.37   10.3   2.0    1.4  1  MscS_porin    Mechanosensitive ion channel porin domain
       0.73    9.9   2.5        4.8    7.2   0.4    2.6  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.5e-05      0.13      15      88 ..      20      94 ..      17      97 .. 0.91
   2 ?   -0.6   0.0       0.3   8.9e+02      69      97 ..     547     577 ..     516     586 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
       BAR_3 15 esleevEaeleelekklkkllKlckrlieagkaysaaqkqfaqsLre.lkkeskgdeetdesLkkfsellqelen 88
                ++l +v ++++el  k + + K++++++++ +a s+a  ++++sL++  + +  g +   +s+++ +++ q++++
  EHU00478.1 20 KNLAKVGKDAKELGGKFDAINKSIQAITKSSEAASKALDKLNRSLNNpATSQAVGAKTYADSMERAAKAAQKIAS 94
                6899999****************************************6666669999999****99999998865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.3
       BAR_3  69 deetd..esLkkfsellqelenehtilldqa 97 
                 d++t+  +sL+ f + l+e +n h ++  +a
  EHU00478.1 547 DTLTKglSSLTTFLQKLTEFSNAHPKFTSSA 577
                 4444477888888888888888887766655 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   4.8e-05      0.14     220     278 ..      14      72 ..       5      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.8e-05
        RmuC 220 rqeaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkklegnilrka 278
                  +++++kn +++ + ++el  kf  + ++++++ k+ e a+k++dk+  +l++  +++a
  EHU00478.1  14 LNDQLSKNLAKVGKDAKELGGKFDAINKSIQAITKSSEAASKALDKLNRSLNNPATSQA 72 
                 46788999999999999999999999999999999999999999998888876555555 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   6.8e-05       0.2      17      69 ..      13      65 ..       3      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTT CS
  Laminin_II 17 eqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklap 69
                    +ls+nl ++ ++++e+ ++ + +n+ +++ +k  + A+++  kL++ ++
  EHU00478.1 13 TLNDQLSKNLAKVGKDAKELGGKFDAINKSIQAITKSSEAASKALDKLNRSLN 65
                455689*******************************************9987 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   9.7e-05      0.29     132     192 ..       6      66 ..       5      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.7e-05
        Spc7 132 WRmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaee 192
                 +R   l +L ++l++nl+++ +d+++L  + + +++  +++++  ++ ++ l+kl++  ++
  EHU00478.1   6 YRVAVLLTLNDQLSKNLAKVGKDAKELGGKFDAINKSIQAITKSSEAASKALDKLNRSLNN 66 
                 7899999***********************************************9986655 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.0   0.00012      0.37      89     159 ..      17      85 ..      11      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
  MscS_porin  89 qtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaela 159
                 q s +l+++ ++ ++l  ++ +++ +++ + +   +a+++l+++++ Ln++a++++    a+  a  +e+a
  EHU00478.1  17 QLSKNLAKVGKDAKELGGKFDAINKSIQAITKSSEAASKALDKLNRSLNNPATSQA--VGAKTYADSMERA 85 
                 77899**********************************************65554..3333333333333 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4    0.0016       4.8      47      96 ..      11      66 ..       3      74 .. 0.61
   2 ?    1.5   0.1      0.09   2.7e+02      39     118 ..     545     590 ..     515     653 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
  Baculo_PEP_C 47 Lnalsedlksllaeldt...rldtlltnLtdalnalq...dtlrneLtnlnsiltn 96
                  L +l+++l++ la++ +   +l   +++++++++a++   ++ +++L+ ln  l+n
    EHU00478.1 11 LLTLNDQLSKNLAKVGKdakELGGKFDAINKSIQAITkssEAASKALDKLNRSLNN 66
                  33444455555555544334566666666666666666667777777777777776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.09
  Baculo_PEP_C  39 lldaietqLnalsedlksllaeldt...rldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNinstLnnllqalnnl 118
                   lld++ + L++l++ l++ l+e+++   ++++++  L + + al+                                    +l
    EHU00478.1 545 LLDTLTKGLSSLTTFLQK-LTEFSNahpKFTSSAMSLLEVITALA------------------------------------GL 590
                   334444444444444444.22222223355555555555554444....................................33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.40
# Mc/sec: 5818.07
//
Query:       EHU00479.1  [L=152]
Description: hypothetical protein CKS_2637 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1061.86
//
Query:       EHU00480.1  [L=171]
Description: putative antirepressor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-38  130.1   0.0    5.9e-38  129.7   0.0    1.2  1  P22_AR_N  P22_AR N-terminal domain


Domain annotation for each model (and alignments):
>> P22_AR_N  P22_AR N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.0   3.3e-42   5.9e-38      16     113 ..       3      99 ..       1     100 [. 0.94

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 3.3e-42
    P22_AR_N  16 dgkiyvamkpivealGldwssQveKlke.deklssvvieitvpsdgktremlclplrklpgwLakInpnkvkpelrekviaYqeecaevLadywtkgka 113
                  g +yvamkpive++Gldw+sQ++Kl +  ek++++ i+  +p++g+ ++mlc+pl+kl+gwL++Inp kv++++re +i+Yqeec+++L+dyw kg a
  EHU00480.1   3 AGVAYVAMKPIVENIGLDWKSQYAKLVSqREKFGCGDIT--IPTKGGVQQMLCIPLKKLNGWLFSINPAKVRDAVREGLIRYQEECFTALHDYWSKGVA 99 
                 699***********************9956777777776..9******************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1232.25
//
Query:       EHU00481.1  [L=57]
Description: hypothetical protein CKS_2635 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-12   47.1   1.2    1.7e-12   46.9   1.2    1.1  1  Arc             Arc-like DNA binding domain
    5.4e-05   22.9   0.0    6.8e-05   22.6   0.0    1.1  1  HicB            HicB family
     0.0073   16.2   0.6      0.012   15.5   0.6    1.5  1  RHH_1           Ribbon-helix-helix protein, copG family
     0.0075   16.8   0.0     0.0092   16.5   0.0    1.1  1  CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin sys
  ------ inclusion threshold ------
      0.016   15.4   0.7      0.021   15.0   0.7    1.1  1  FliG_M          FliG middle domain


Domain annotation for each model (and alignments):
>> Arc  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   1.2   4.8e-16   1.7e-12       2      45 ..       9      52 ..       8      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 4.8e-16
                CCSEEEEEECEHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHC CS
         Arc  2 rkapkFnlRlPeevrekvkevAeengRSmNSEilqrveeslkke 45
                rk + F lRlPe ++e ++  Ae +g S+NS i+qr+  sl  e
  EHU00481.1  9 RKNDSFQLRLPERMKEEIRRMAEMDGISINSAIVQRLAKSLREE 52
                89***************************************876 PP

>> HicB  HicB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.9e-08   6.8e-05      19      51 .]      13      45 ..       9      45 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.9e-08
        HicB 19 kFnlRvspeLHarlalaAaeqgvSLNqfveqaL 51
                +F+lR+++ + +++  +A++ g+S+N  ++q+L
  EHU00481.1 13 SFQLRLPERMKEEIRRMAEMDGISINSAIVQRL 45
                7*************************9999987 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   3.4e-06     0.012       2      28 ..      14      40 ..      13      52 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.4e-06
                EEEEEEHHHHHHHHHHHHHHTSSHHHH CS
       RHH_1  2 vsirldeellerLdelarrrgrSrSel 28
                +++rl+e ++e+++++a++ g S   +
  EHU00481.1 14 FQLRLPERMKEEIRRMAEMDGISINSA 40
                789******************998654 PP

>> CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06    0.0092      41      77 ..      10      46 ..       6      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.6e-06
  CopG_antitoxin 41 ktksislrlpedlLealkekAnkrdvpyqslikelle 77
                    k+ s  lrlpe + e+++  A+  +++++s i + l+
      EHU00481.1 10 KNDSFQLRLPERMKEEIRRMAEMDGISINSAIVQRLA 46
                    778889**********************998877665 PP

>> FliG_M  FliG middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.7   5.9e-06     0.021      35      68 ..      18      52 ..      16      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.9e-06
                S-HHHHHHHHHHHHTCCTC..SHHHHHHHHHHHHHH CS
      FliG_M 35 Lpeelraevirriatlekv..spevlkeveevLekk 68
                Lpe++++e irr+a+++ +  +++++++++++L+++
  EHU00481.1 18 LPERMKEE-IRRMAEMDGIsiNSAIVQRLAKSLREE 52
                78877777.6*******986689**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 486.84
//
Query:       EHU00482.1  [L=118]
Description: hypothetical protein CKS_2634 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-18   65.8   0.0    5.3e-18   64.6   0.0    1.6  1  Arc       Arc-like DNA binding domain
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.046   13.3   0.0    1.1  1  SpvD      Salmonella plasmid virulence protein SpvD
      0.042   13.7   0.0      0.073   12.9   0.0    1.4  1  HicB      HicB family
       0.16   11.9   0.0       0.27   11.1   0.0    1.3  1  RHH_5     CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5


Domain annotation for each model (and alignments):
>> Arc  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   1.2e-21   5.3e-18       5      44 ..      11      50 ..       8      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 1.2e-21
                EEEEEECEHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH CS
         Arc  5 pkFnlRlPeevrekvkevAeengRSmNSEilqrveeslkk 44
                ++F +R+P ++r+ v+ +A++ngRSmNSEi+q+++++l  
  EHU00482.1 11 ERFTVRMPDGMRDAVAARAKANGRSMNSEIVQILQDALDS 50
                58***********************************975 PP

>> SpvD  Salmonella plasmid virulence protein SpvD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     1e-05     0.046      23      86 ..      35      97 ..      18     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
        SpvD 23 dsdskevkrikdalcvkskekklypqtlsk.ddlkkmakyvnktyvhysgncvllsaclhynihy 86
                  +s+ v+ ++dal  ++   k +p+ +sk dd+++m k+vn+    +  n  lls  l y   +
  EHU00482.1 35 SMNSEIVQILQDALDSQTSVPKAFPEGVSKeDDFNRMVKFVNDKTEDFKNN--LLSEILEYAAFH 97
                44556677889****************9984689*********99999887..789999987665 PP

>> HicB  HicB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.073      19      51 .]      12      44 ..       6      44 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
        HicB 19 kFnlRvspeLHarlalaAaeqgvSLNqfveqaL 51
                +F++R +  +  ++a+ A+++g S+N  ++q+L
  EHU00482.1 12 RFTVRMPDGMRDAVAARAKANGRSMNSEIVQIL 44
                69************************9888876 PP

>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.1e-05      0.27       3      41 ..      12      50 ..      11      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
       RHH_5  3 RvnvtLPeelleeLeewAdeegRsvSnlaafLvekalre 41
                R +v  P++ +++++  A++ gRs+ + + +++++al++
  EHU00482.1 12 RFTVRMPDGMRDAVAARAKANGRSMNSEIVQILQDALDS 50
                667888******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 926.01
//
Query:       EHU00483.1  [L=146]
Description: hypothetical protein CKS_2633 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-08   32.0   0.0    2.3e-07   30.7   0.0    1.6  1  Phage_tail_S    Phage virion morphogenesis family
  ------ inclusion threshold ------
      0.038   15.0   0.0       0.11   13.5   0.0    1.8  1  HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-compon


Domain annotation for each model (and alignments):
>> Phage_tail_S  Phage virion morphogenesis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   2.6e-11   2.3e-07       5     130 ..       8     123 ..       4     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2.6e-11
  Phage_tail_S   5 avedalkrllak.ladrrplmraigeeLresqeqrfeaqkdP.dG.spwkplkdktlaakkgkikrggkilrklgrlarslkteatsdsvevGsnki 98 
                    + +a+++l+++  + ++ ++ a+ge++r++ ++++ + +    G  +w+pl+++t  ++ +k+   ++ l ++g+l++s++++++ +++ +Gs   
    EHU00483.1   8 SLASAFSSLATSiSNGQNGIAHALGEAIRDRAKEKIGDYQPSsHGfDAWAPLAQSTMDQRVSKGFPANNPLLRSGELRDSITMRSDGNGAIIGSPLD 104
                   67789999999977778889****************999966789779******************9999999*********************999 PP

  Phage_tail_S  99 yAaiHQfGgkagrdrvskkgkkvtipaRplLG 130
                   +A     G    +          +ip Rp+LG
    EHU00483.1 105 IALYQENGT---E----------HIPPRPFLG 123
                   985544444...2..........366666664 PP

>> HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05      0.11       2      81 .]       8     112 ..       7     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
  HK97-gp10_like   2 klakkleklserevekaikkalkkaAkevldkakkrtp................................svdtggdLrdsitvqgkvkkkggey 64 
                      la  +++l+   ++   + ++ + ++ ++d ak+++                                 +  + g+Lrdsit      + +g  
      EHU00483.1   8 SLASAFSSLAT-SISNGQNGIAHALGEAIRDRAKEKIGdyqpsshgfdawaplaqstmdqrvskgfpannPLLRSGELRDSITM-----RSDG-N 95 
                     67888889998.699999999999999999999999999999999999999999999999988888776633366*********.....3322.3 PP

  HK97-gp10_like  65 rvevgnnaeyArlvEfG 81 
                        +g+++++A ++E+G
      EHU00483.1  96 GAIIGSPLDIALYQENG 112
                     35689999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1083.26
//
Query:       EHU00484.1  [L=49]
Description: hypothetical protein CKS_2632 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 395.86
//
Query:       EHU00485.1  [L=128]
Description: hypothetical protein CKS_2631 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1102.59
//
Query:       EHU00486.1  [L=143]
Description: hypothetical protein CKS_2630 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.068   13.4   0.1       0.26   11.5   0.1    2.0  2  DUF1921   Domain of unknown function (DUF1921)


Domain annotation for each model (and alignments):
>> DUF1921  Domain of unknown function (DUF1921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.3   5.4e+03       7      19 ..      42      54 ..      42      57 .. 0.83
   2 ?   11.5   0.1   1.5e-05      0.26      32      51 .]      89     108 ..      80     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.3
     DUF1921  7 vatvsGsqqkLlv 19
                v+ ++G  ++L++
  EHU00486.1 42 VTKITGETDTLMI 54
                6779999999987 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.5e-05
     DUF1921  32 AsGafseAvntdnGriRiWR 51 
                 A G  +e + ++nG++ +WR
  EHU00486.1  89 APGTITETITENNGAVTVWR 108
                 78999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1247.49
//
Query:       EHU00487.1  [L=520]
Description: phage tail sheath protein FI [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00019   21.8   6.8    0.00062   20.2   5.4    2.5  2  Phage_sheath_1N  Phage tail sheath protein beta-sandwich doma
     0.0029   17.6   0.0     0.0058   16.6   0.0    1.5  1  Phage_sheath_1C  Phage tail sheath C-terminal domain


Domain annotation for each model (and alignments):
>> Phage_sheath_1N  Phage tail sheath protein beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   5.4     7e-08   0.00062       5      94 ..     103     205 ..      99     245 .. 0.73
   2 ?   -1.1   0.0       0.3   2.7e+03      25      39 ..     505     519 ..     463     519 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7e-08
                      CEEEEE.TTSS..T.....EEESSSSGGGGGEEEEEEEHSSSTTSEEEEEEETTEEEEEEEEESSCCCTT-.BSSEEEEHHTTEES.ECEEEES CS
  Phage_sheath_1N   5 tatltltstase.a.....igakypgerGnritvevtsgaddsnqfdvivregdrivdaqilvtgekdvvg.niavaaklvasgna.pdlpatA 90 
                      +a++ l++ta+  a     ++aky g++Gn it ++ +g +  n ++ +v+  +++ + ++ +t      g ++a+ a+lv ++n  +++   A
       EHU00487.1 103 AAAIALKDTATPtAatgmtLTAKYSGTKGNGITAKISTGTA-VNSYKLTVYFPGQTPEVFDNIT------GsGAALWASLVSAVNNgITAVRGA 189
                      467899999998878999**********************9.8999999999888888887776......335666666666666544444444 PP

                      CE.............T CS
  Phage_sheath_1N  91 ssw............g 94 
                      s++            +
       EHU00487.1 190 SQFvvatvgtstsvpD 205
                      4434444444444441 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
                      GGGGGEEEEEEEHSS CS
  Phage_sheath_1N  25 erGnritvevtsgad 39 
                      e+G +++v+v s+a+
       EHU00487.1 505 EGGASVNVSVSSSAT 519
                      689999999999887 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.4e-07    0.0058      10      99 ..     408     502 ..     400     505 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.4e-07
                      HHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTSB-S--S......TTSEEEEC.SSSSTTEEEEEEEE-BSSSSS- CS
  Phage_sheath_1C  10 evirtldllrddirstfkkkylgkklnnddgralvksalnaylkelqregaienfdn......ksdlevea.kntdkdrlvvkinvkpvnsmek 96 
                      +++r+ ++l  +++ +f +  ++++  + d+r++ k+++ ++l++l++eg+i + +       k d ++++ +    + +v++++vk++  +++
       EHU00487.1 408 TYTRMTNYLSATLAASFGY--VVGEGQTTDLRRSTKATIESFLQNLADEGMIGDPNGgpafsvKLDATNNPsSRVALGYMVADVQVKYLATVRY 499
                      6889999999999999999..*******************************997776655556666666666666677777777777777777 PP

                      EEE CS
  Phage_sheath_1C  97 lyf 99 
                      + +
       EHU00487.1 500 FLI 502
                      765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 4464.94
//
Query:       EHU00488.1  [L=64]
Description: hypothetical protein CKS_2628 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 504.04
//
Query:       EHU00489.1  [L=152]
Description: hypothetical protein CKS_2627 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1257.38
//
Query:       EHU00490.1  [L=213]
Description: hypothetical protein CKS_2626 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.097   12.6   0.0       0.24   11.4   0.0    1.6  1  TOM13     Outer membrane protein TOM13


Domain annotation for each model (and alignments):
>> TOM13  Outer membrane protein TOM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.3e-05      0.24      46      76 ..     166     196 ..     161     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.3e-05
       TOM13  46 inlvLPFinGlmLGfGellAhEiafrlgWsg 76 
                  n++LP++nG+ L   +++  +++ r++ ++
  EHU00490.1 166 FNVLLPYVNGVTLRTADIITDDLGGRYKLTS 196
                 69********************999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1728.61
//
Query:       EHU00491.1  [L=130]
Description: hypothetical protein CKS_2625 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   14.4   0.1       0.48   10.7   0.0    2.1  2  DUF1799   Phage related hypothetical protein (DUF1799)
       0.21   11.8   0.0          1    9.5   0.0    2.0  1  KapB      Kinase associated protein B


Domain annotation for each model (and alignments):
>> DUF1799  Phage related hypothetical protein (DUF1799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.029   2.6e+02      45      73 ..      40      69 ..      31      75 .. 0.66
   2 ?   10.7   0.0   5.3e-05      0.48       9      43 ..      80     114 ..      73     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.029
     DUF1799 45 Yealfavldrlgldkeek.ddlfdqlqvle 73
                +++l+++l+ l  ++e+   + ++ l +le
  EHU00491.1 40 WQTLYHRLKTLSAEEEAVvVNYITTLNTLE 69
                899999988776665543134445555555 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.3e-05
     DUF1799   9 eaetvevWpenaeavelflrvgtqWrvgpaGavgL 43 
                 ++++ +vW  n + v    r+ +qWr+ + G +g+
  EHU00491.1  80 DTDQAAVWKRNTNEVRDRTRLFNQWRRELCGFIGI 114
                 567999*********************99999987 PP

>> KapB  Kinase associated protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00012         1      17      59 ..       5      58 ..       2     106 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
        KapB 17 kllvkvlaVlkhPtqGDLHnpkeadvv...........fFheRkALsykEktnv 59
                + lv v+  + +P+qGD+  +   d +           ++h  k Ls +E+++v
  EHU00491.1  5 SQLVDVRRFMGYPMQGDIPATDTSDMAygwvssgawqtLYHRLKTLSAEEEAVV 58
                5799*************9988887754111111111115666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1108.62
//
Query:       EHU00492.1  [L=37]
Description: hypothetical protein CKS_2624 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 281.06
//
Query:       EHU00493.1  [L=374]
Description: hypothetical protein CKS_2623 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-16   59.9   3.0    1.6e-13   50.1   1.5    2.1  2  P22_CoatProtein  P22 coat protein - gene protein 5


Domain annotation for each model (and alignments):
>> P22_CoatProtein  P22 coat protein - gene protein 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   1.5   8.9e-18   1.6e-13      71     276 ..      69     265 ..      31     270 .. 0.83
   2 !    9.4   0.0     2e-05      0.36     326     412 ..     285     369 ..     282     374 .] 0.72

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 8.9e-18
                      -EE--EEEEE----EEEEEEEEGGG...GSS....SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEESS-TTSSTTHHHHHHHHHHHHH CS
  P22_CoatProtein  71 glvelkvtvkvgkqkgvdfelssaera.lsl....edlserilkpaieklandieldllnslaengslvvgkadaspntiikkwsdvadaesil 159
                      + + ++++ ++ k   v+f+++ +e+  +++    +++ +  ++ a++ l+n++e+dl  +la+  s  +g+a+ +p   + ++sd a++++il
       EHU00493.1  69 DQNIGNTPFTIQKSRMVPFQWTGEEQKgVNNgpgyANIRRNQIAQAMRTLVNEMESDLG-KLALISSRASGTAGTTPF--ATNLSDTAQVRKIL 159
                      666689999999999******988754144322224677888999*************9.**************9999..89************ PP

                      HHCTB--T-EEEEE-HHHHHHHHHHHHSSSSSSHHHHHHHH.STEEESSCTT-SEEEE-TT--EE-----TSEBBSS-B-B---SE-BSS-EEE CS
  P22_CoatProtein 160 kdlgvktdgrsavldpadekklagslagleaageevseayr.egqirgrvaGfdalmdqnvlshttgalggtitVkgAnqvkseavkDnrtatv 252
                       d+g++ ++ +av+d+++ +  +  la+l +a+e+  + +r +g++  +  Gf+++ + +v  h+ g+ g++   +gA +v++        + +
       EHU00493.1 160 SDNGAPLSELQAVIDTTAGAN-LRTLAQLTKANEAGTDELRaQGTL-LELHGFKVRESAGVVTHAPGT-GASYVTNGALTVGT--------TVI 242
                      ***************998765.456666666666666666637999.9*******************9.999999********........89* PP

                      EBS--TS..--TT-EEEEEEEEEE CS
  P22_CoatProtein 253 tlsattgatlkaGDvlsiagvkai 276
                       ++  tg+ + aGDv+ i + k +
       EHU00493.1 243 PVQTGTGT-ILAGDVIGIGNFKYV 265
                      ******97.********9988655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 2e-05
                      -B-SSEBEEES--S-EE-..EEEEETTCEEEEE----TTSTTG.TSSEEEEE.T--EEEEEEEEETTTTEEEEEEEE-EEEEES-TTTE CS
  P22_CoatProtein 326 slangaavtilntaaatlkkNlffakeaitLvtaplelpkkls.edvatety.dGlsirvvtqydistdkqvmRldllygvkalrPelg 412
                      +la gaavt   t +a    N +f+ +ai L+t+  +lp+++  +d  ++ +   +++ +      +++ +   ++   g + ++Pe  
       EHU00493.1 285 NLASGAAVTLAATYTA----NFAFSRSAILLATRAPALPQEGDmADDRITITdPRTGMAFEVSMYRQYKRVHYEIAAAWGCANIKPEHT 369
                      5788999999888777....**************999**88763444444444456666666666677777777777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3172.86
//
Query:       EHU00494.1  [L=250]
Description: hypothetical protein CKS_2622 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.015   15.7   0.4      0.074   13.4   0.0    2.1  2  FliC      Flagellin protein
       0.12   11.8   0.0       0.21   11.0   0.0    1.4  1  GbpC      Glucan-binding protein C
       0.22   10.4   0.1       0.35    9.8   0.1    1.2  1  Stn1      Telomere regulation protein Stn1


Domain annotation for each model (and alignments):
>> FliC  Flagellin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05     0.074      99     122 ..       3      26 ..       1      30 [. 0.92
   2 ?   -0.3   0.1      0.21   1.2e+03      20      52 ..     205     237 ..     200     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
        FliC  99 YfvqaDGsVtngsGkavYvsadGk 122
                 + ++++G V ++ Gk vYv+ dGk
  EHU00494.1   3 LKLDENGHVVVSDGKPVYVNDDGK 26 
                 56899******************8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
        FliC  20 gttytlagatagtvdvtgatvsadallsavksa 52 
                 gt ++ +g++ g++ + g+t+s ++++s + ++
  EHU00494.1 205 GTGASGGGSSGGNGGTGGKTISRAQFESLSPQD 237
                 666666666667799999999999999876555 PP

>> GbpC  Glucan-binding protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.5e-05      0.21     171     217 ..      20      66 ..       7      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.5e-05
                 EE-TTS-B---TTS--EEEE----EEEETTEEEEEEEE-TTSEEE-- CS
        GbpC 171 fYdedGkeidpdkekallslsSLNrengkssdtvEkvkdftgefvkI 217
                 + ++dGkei +d   al s+s LN e +++ + +E ++ +   f  I
  EHU00494.1  20 YVNDDGKEIAFDAPGALQSISRLNGEAKSHRERAESAEASLKAFEGI 66 
                 6689*********99999*********99889999888776666655 PP

>> Stn1  Telomere regulation protein Stn1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   5.9e-05      0.35     175     246 ..      41     115 ..      35     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.9e-05
                 XX..............XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
        Stn1 175 klnelyegedeveeeestPkkenn.iqnkaasieqLqkiksvedklevasp..ytareesiyvkdeellltlles 246
                  ln++ + ++e +e +++  k    i +++a i+ L  ik++ dk  v ++  +++r+e+i  ++e+    + e+
  EHU00494.1  41 RLNGEAKSHRERAESAEASLKAFEgIADPKAAIKALEVIKNLDDKKLVDAGevDKVRAEAIKAVEEKYAPIVKER 115
                 6888888899889999998888889*************************9334567778888888777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1941.40
//
Query:       EHU00495.1  [L=445]
Description: hypothetical protein CKS_2621 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-41  141.2   0.1    3.3e-41  140.6   0.1    1.3  1  DUF4055   Domain of unknown function (DUF4055)


Domain annotation for each model (and alignments):
>> DUF4055  Domain of unknown function (DUF4055)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.1   1.8e-45   3.3e-41       1     135 []     231     365 ..     231     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 1.8e-45
     DUF4055   1 PLldLAelNikhyrsssdqedilhfarvpllvltGleeekelaiGsgsaielpdgaa.akyveasgeaiaagkealdrlekqmaalGarlleektateT 98 
                 PL+ LA lNi+h++s+sdq++ilh+arvp+l+   l +  ++++G+++ai+++d++a +kyve++g+ai+ag+++l +le+ m+++Ga+ll+ k++++T
  EHU00495.1 231 PLAQLAFLNIEHWQSRSDQQTILHVARVPILFGRKLGD-APITVGAANAIVSDDDNAdLKYVEHTGKAIEAGRTDLRDLEDLMRQIGAELLVVKPGRQT 328
                 9*******************************999999.6**************9999***************************************** PP

     DUF4055  99 atqaaieaeaenSvLallasnledaldqaLrwmaewl 135
                 + q+  ++ea +++L+ ++++l+da + aL+++aew+
  EHU00495.1 329 VAQTVADNEAGTCALQRIVGDLTDAANLALQYAAEWI 365
                 ************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3248.20
//
Query:       EHU00496.1  [L=490]
Description: hypothetical protein CKS_2620 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-11   43.3   0.1    6.4e-11   42.6   0.1    1.4  1  Terminase_6C  Terminase RNaseH-like domain


Domain annotation for each model (and alignments):
>> Terminase_6C  Terminase RNaseH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   3.6e-15   6.4e-11       2     153 ..     329     475 ..     328     477 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.6e-15
                   EEE--SS..CTTBEEEEEEE...ETTTTCEEEEEEEEESSS-CCCHHHHHHHHHHCTTCEEEEECCSCHHHHHHHHHHCCT--S-SCEESSH..HHH CS
  Terminase_6C   2 gvDpaeg..rggDyaalvvi...dvkddkfellavlherglspalqaaaikklaerynviyvyieitsaGesvaellkrdlesealavkpepaskdk 93 
                   +vDp +   +++D +++vv+   ++  d+ +  +   + + sp ++a +++ ++ ++ + ++ ie++++G +  ++l++++     ++   +ask+k
    EHU00496.1 329 AVDPQAVnnEDSDETGIVVAssyGRGNDRLFSADADYSGKFSPNGWAKKAIWAYTEHRAEAIVIETNQGGDMAEDTLRNAGFT--GRIIRVHASKGK 423
                   67887777899***********9777777777666666667777777777777778*************************85..3444444569** PP

                   HHHHHHHHHHHHTTSEEEETHH.CECCCCCCHCC-EEHCCHHCHCSGCCTCHHHHHHHHHH CS
  Terminase_6C  94 atrvskvkdliesgrlkvdkga.ecaksfealegfhtdlgaerstsaehdDlvdAlsyall 153
                   ++r++++++l+e+gr+ +  +  ++++ +++    +          ++++D++dAl++a+ 
    EHU00496.1 424 YARAEPISALYEQGRVAHRGNLyTLENQLMEYVPATA---------KKSPDRLDALVWAIT 475
                   ******************9974444444444444444.........677**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3757.80
//
Query:       EHU00497.1  [L=58]
Description: hypothetical protein CKS_2619 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 460.25
//
Query:       EHU00498.1  [L=116]
Description: hypothetical protein CKS_2618 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   12.6   0.0       0.12   11.9   0.0    1.4  1  DUF166    Domain of unknown function


Domain annotation for each model (and alignments):
>> DUF166  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.5e-06      0.12     110     138 ..      28      56 ..      20      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.5e-06
      DUF166 110 vpkpfCsleeegkpkideFleefGkPele 138
                 ++ +fC+l e++  +i + ++efG+P+++
  EHU00498.1  28 TDAEFCALVEHELYHIAQAADEFGAPKFN 56 
                 5789***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 961.86
//
Query:       EHU00499.1  [L=69]
Description: hypothetical protein CKS_2617 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 620.44
//
Query:       EHU00500.1  [L=102]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.14   11.5   0.0    1.1  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.9e-06      0.14      56     108 ..      32      81 ..      31      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.9e-06
                 TTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEE.TTSHGTCCHSSCGCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
   SBP_bac_3  56 sgkvDiaiaaititpeReekvdFsqpyfsagqvllvrk.kdaskissiksladL 108
                 sg +D+ai+ +    + +ek+ F + + ++g +l++r+ k++   + ik+ ++L
  EHU00500.1  32 SGLADMAISEMQNRVAAAEKFSFEE-HGQTGSALMTRRkKEK---RVIKKAEQL 81 
                 6899********************8.***********84433...455544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 780.99
//
Query:       EHU00501.1  [L=37]
Description: hypothetical protein CKS_2615 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 323.57
//
Query:       EHU00502.1  [L=138]
Description: hypothetical protein CKS_2614 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0071   15.9   1.4     0.0086   15.6   1.4    1.1  1  Leu_zip   Leucine zipper
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.037   13.6   0.0    1.3  1  DUF2478   Protein of unknown function (DUF2478)
      0.092   13.4   0.1       0.11   13.1   0.1    1.2  1  PIG-L     GlcNAc-PI de-N-acetylase
       0.15   11.8   0.2       0.18   11.6   0.2    1.1  1  DUF3708   Phosphate ATP-binding cassette transporter
       0.18   11.4   5.5       0.69    9.5   1.0    3.2  3  PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-te
       0.34   11.0   9.2        1.8    8.7   1.7    2.4  2  bZIP_1    bZIP transcription factor
       0.35   10.7   5.6      0.081   12.7   1.3    2.0  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.4   3.4e-06    0.0086     135     223 ..      23     112 ..      17     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
     Leu_zip 135 ierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdeke.nskeiskleeklaelkldlektleektasaksleedla 223
                 i++L  +n+ L++r ++l  q  ++++++s +++++k+l +++ge+++  + ++++ +  e k + l++++++ l+e++ s   + +d++
  EHU00502.1  23 IAKLGYDNQILNQRNERLRLQNAELMSKNSDMAATIKNLADRVGEQNKIVAdETRRRAAAEMKQQGLQNEVKQALRESKPSVVLVPDDVV 112
                 899999*************************************99977665478888899999999*******99999888777776665 PP

>> DUF2478  Protein of unknown function (DUF2478)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.037     103     143 ..      80     120 ..      33     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
     DUF2478 103 GkqEaeGrGlreeiaaalaagiPvltaVseklleaWraFag 143
                 +  E++ +Gl +e+++al +  P ++ V+++++++ r+ a+
  EHU00502.1  80 AAAEMKQQGLQNEVKQALRESKPSVVLVPDDVVDRLREQAD 120
                 678******************************99988665 PP

>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.4e-05      0.11      58     114 ..      51     112 ..      16     124 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHCTE.......EEEEECC..CBTT-STT....S-CHHHHHHHHHHHHHH--SEEEEE-TTT CS
       PIG-L  58 Earaaakhlgva.....dedvffld..fpDgsles....ydedellddlaklieryrPdvvltldpeg 114
                 +++ aa + ++a     +      +  ++D + ++    +++++l++++++++++ +P+vvl++d+  
  EHU00502.1  51 NSDMAATIKNLAdrvgeQ------NkiVADETRRRaaaeMKQQGLQNEVKQALRESKPSVVLVPDDVV 112
                 333333333332112111......13344444444677799***********************9865 PP

>> DUF3708  Phosphate ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   7.2e-05      0.18      46     132 ..      10      94 ..       5     119 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.2e-05
     DUF3708  46 alPALllllvWlllqpsvieslvaaelpeavlalsegqrqllledvrniaegldaLsaae..aealkatadeirallaavgvalgtevt 132
                 ++PA++++++ +++++   ++++ ++  e ++ +++      +++ +  a+ +++L ++   ++++ a++++ ra ++++   l  ev+
  EHU00502.1  10 LIPAIFVVIIIGFIAKLGYDNQILNQRNERLRLQNAEL----MSKNSDMAATIKNLADRVgeQNKIVADETRRRAAAEMKQQGLQNEVK 94 
                 79**************************9888776433....33333333333333333300333334444444444433333444443 PP

>> PikAIV_N  Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.0   0.00027      0.69      17      27 ..      37      47 ..      37      49 .. 0.94
   2 ?    0.8   0.0      0.15   3.8e+02       8      13 ..      95     100 ..      90     100 .. 0.81
   3 ?    0.8   0.1      0.14   3.6e+02      18      23 ..     113     118 ..     112     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00027
    PikAIV_N 17 nERLRqqNrrL 27
                nERLR qN++L
  EHU00502.1 37 NERLRLQNAEL 47
                9********98 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
    PikAIV_N   8 eALRaS 13 
                 +ALR+S
  EHU00502.1  95 QALRES 100
                 8***98 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.14
    PikAIV_N  18 ERLRqq 23 
                 +RLR+q
  EHU00502.1 113 DRLREQ 118
                 8***98 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.9    0.0029       7.3      32      60 ..      34      62 ..      29      67 .. 0.57
   2 ?    8.7   1.7    0.0007       1.8      11      37 ..      67      95 ..      63     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 32 errvkaLekeNksLkseleelkkevekLk 60
                 +r + L  +N++L s+++ ++ ++++L 
  EHU00502.1 34 NQRNERLRLQNAELMSKNSDMAATIKNLA 62
                55555555555555555555555555553 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0007
                --HHHHHHHHHHHHHHHHHH..HHHHHHH CS
      bZIP_1 11 qkNReaArrsRqRKqaeiee..Lerrvka 37
                ++N++ A + R+R  ae+++  L+++vk+
  EHU00502.1 67 EQNKIVADETRRRAAAEMKQqgLQNEVKQ 95
                79************999987779999986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   3.2e-05     0.081       4      52 ..      15      63 ..      13      80 .. 0.85
   2 ?   -0.3   0.6      0.36   9.3e+02      26      49 ..      72      95 ..      64     101 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
                XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  4 lfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLks 52
                ++++ + f++k  ++ + l+q  ++l  ++a+l  +n +++a +k+L +
  EHU00502.1 15 FVVIIIGFIAKLGYDNQILNQRNERLRLQNAELMSKNSDMAATIKNLAD 63
                566667778888889999*****************************53 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.36
                HHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC 26 iaalqaelaklkaeneeLeaevkd 49
                +a+ ++  a+   +++ L+ evk+
  EHU00502.1 72 VADETRRRAAAEMKQQGLQNEVKQ 95
                555555555555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1516  (0.0845557); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1139.04
//
Query:       EHU00503.1  [L=137]
Description: putative endolysin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-08   34.2   0.1    2.9e-08   33.9   0.1    1.1  1  Glyco_hydro_19  Chitinase class I


Domain annotation for each model (and alignments):
>> Glyco_hydro_19  Chitinase class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   1.6e-12   2.9e-08     103     158 ..      42      96 ..      22     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.6e-12
  Glyco_hydro_19 103 agkkyyGrGpiqlsynynygeaGqaiGqdllnnpdlvatdavvsfktalwfwmtaq 158
                      g ky GrG  q++++ ny ++ +a+G  l +npdl+ +d     ++a+wfw ++ 
      EHU00503.1  42 DGWKYRGRGLKQVTFHDNYAACEKALGIPLTDNPDLLLQDGNA-ARSAVWFWKANI 96 
                     5779************************************985.589*****8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1027.70
//
Query:       EHU00504.1  [L=106]
Description: phage holin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-16   58.6   7.2    7.6e-16   58.0   7.2    1.3  1  Phage_holin_3_3  LydA holin phage, holin superfamily III
    0.00087   19.7   0.2      0.001   19.4   0.2    1.1  1  DUF1440          Protein of unknown function (DUF1440)
     0.0022   18.4   1.8     0.0029   18.0   1.8    1.2  1  Phage_holin_3_1  Phage holin family (Lysis protein S)
  ------ inclusion threshold ------
      0.035   13.2   1.6      0.038   13.0   1.6    1.0  1  PHO4             Phosphate transporter family
        4.5    6.9   5.7         10    5.7   0.6    2.0  2  DUF3341          Protein of unknown function (DUF3341)


Domain annotation for each model (and alignments):
>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   7.2   2.1e-19   7.6e-16       2      78 .]      14      89 ..      13      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2.1e-19
  Phage_holin_3_3  2 liivlAllGGlvsylmrakkgrrrfsikellleivvSgfvGllvfllceelglsqlltlaiaglsGylGaraliall 78
                     +++++ +lG ++ y  ++ +g   fs++ l l+++vS+f+G+l +ll+ +++++q++t+ai+g++G++G+ +++al+
       EHU00504.1 14 IALGMTVLGAVAAYAYKVLSG-DTFSWRTLCLQLIVSIFAGFLMMLLATYWQWPQEVTGAICGMAGWSGSSLIKALE 89
                     778999***************.***************************************************9985 PP

>> DUF1440  Protein of unknown function (DUF1440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   2.8e-07     0.001      34      95 ..      16      80 ..       4      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.8e-07
     DUF1440 34 lGipedltsatytys...gqkvnwvsvlvhilfsivfavlYvvvaevfpkiklwqGalfGllvti 95
                lG++     a+y y+   g +++w ++ + +++si++++l +++a ++++ + + Ga+ G++ + 
  EHU00504.1 16 LGMTVLGAVAAYAYKvlsGDTFSWRTLCLQLIVSIFAGFLMMLLATYWQWPQEVTGAICGMAGWS 80
                555443334444443333******************************************98775 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.8     8e-07    0.0029      20      98 ..      15      95 ..       5      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 8e-07
  Phage_holin_3_1 20 qiiaavlAlviallrviYdgk..swkkvlleallCgllalavrslle.llglpaslavviggliGflGvekirelakkllek 98
                      ++ +vl +v a+   + +g+  sw++  l  l+ +++a +++ ll+ + ++p++++ +i g+ G+ G + i++l k++l+k
       EHU00504.1 15 ALGMTVLGAVAAYAYKVLSGDtfSWRTLCLQ-LIVSIFAGFLMMLLAtYWQWPQEVTGAICGMAGWSGSSLIKALEKRFLQK 95
                     5667788888899888888987666666665.777888888888775266*****************************997 PP

>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.6   1.1e-05     0.038      28      95 ..      10      75 ..       2     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
        PHO4 28 aaifeflGavllGaeVaetirkgivdvelfdpselmlgmlaallgaavwlllatvlglPvStthslvG 95
                 a++ +lG+++lGa Va    k + + ++f+ ++l l +++ +++ ++++llat++++P   t ++ G
  EHU00504.1 10 IAMLIALGMTVLGA-VAAYAYKVL-SGDTFSWRTLCLQLIVSIFAGFLMMLLATYWQWPQEVTGAICG 75
                56677788877765.777776644.566778889999999*******************988888766 PP

>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.9    0.0088        32      58      91 ..       8      41 ..       7      51 .. 0.83
   2 ?    5.7   0.6    0.0028        10      59      83 ..      47      71 ..      38      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0088
                HHHHHHHHHHHHHIIIIISS---STT--SS-HHH CS
     DUF3341 58 GllGlalalllqvytsvvdyplnigGkPlfslpa 91
                Gl+++++al ++v+ +v  y + +   + fs+ +
  EHU00504.1  8 GLIAMLIALGMTVLGAVAAYAYKVLSGDTFSWRT 41
                8999999999999999999999998888999865 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0028
                HHHHHHHHHHHHIIIIISS---STT CS
     DUF3341 59 llGlalalllqvytsvvdyplnigG 83
                ++ ++ ++l++++++ +++p+ + G
  EHU00504.1 47 IVSIFAGFLMMLLATYWQWPQEVTG 71
                4567889999999999*****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 835.28
//
Query:       EHU00505.1  [L=273]
Description: antitermination protein Q [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-44  147.6   1.5    6.5e-22   77.7   0.4    2.6  3  Antiterm       Antitermination protein
     0.0034   17.7  17.2     0.0089   16.4  11.1    2.7  2  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
       0.86    9.6  15.6        1.4    9.0   1.6    3.3  3  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi


Domain annotation for each model (and alignments):
>> Antiterm  Antitermination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.4   1.1e-25   6.5e-22       2      87 .]      24     111 ..      23     111 .. 0.98
   2 ?   -1.9   0.0      0.71   4.2e+03      43      59 ..     143     159 ..     129     174 .. 0.66
   3 !   68.4   0.0   8.7e-23   5.2e-19       3      87 .]     180     265 ..     178     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 1.1e-25
                 XTTSBXTTTTSXEEEXHHHHHHHXTSXXETTTXXBXSTTHHHHHHHHHCCCCCHGHHH..HHTSHHHHCHHHHHHHHHHHHHHHHHHH CS
    Antiterm   2 tasdalrctdvgaalglaqskaqlGvpvflakrGysrldsteaiealtklapaltekt..lrklwerkvkpflelLvtkafkeesraa 87 
                 t++d+l++td  a++g+a s+aq+G+++f++k+G+s++d+++a+  lt++a + ++k+  lrkl+++++++++++L+++af +++++a
  EHU00505.1  24 TSPDTLTGTDYIASMGMAMSRAQMGYSAFMGKVGISENDAARAVSLLTDYALQSCDKVaaLRKLDKDIKRQVMQTLASFAFLDYCQSA 111
                 789***********************************************************************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.71
                 HHHHHHHCCCCCHGHHH CS
    Antiterm  43 eaiealtklapaltekt 59 
                  a++++++la++l e+t
  EHU00505.1 143 GAVTEIKRLAESLPENT 159
                 47778888888877776 PP

  == domain 3  score: 68.4 bits;  conditional E-value: 8.7e-23
                 TTSBXT.TTTSXEEEXHHHHHHHXTSXXE.....TTTXXBXSTTHHHHHHHHHCCCCCHGHHHHHTSHHHHCHHHHHHHHHHHHHHHHHHH CS
    Antiterm   3 asdalr.ctdvgaalglaqskaqlGvpvf.....lakrGysrldsteaiealtklapaltektlrklwerkvkpflelLvtkafkeesraa 87 
                 +s+a+r c+++g+a+ +a+sk q Gvpv+     +++rG++r+++ +a++a+t+++++++  t    w r+ kpf++ L+ k+  ees+a+
  EHU00505.1 180 VSSACRdCKGRGKAMMEAESKRQ-GVPVIgdckrCGGRGFERIPAVQAYRAITEITDEISLAT----WDRSGKPFYDGLIVKLEVEESWAD 265
                 89*********************.***************************************....**********************97 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.4    0.0098        59      13      26 ..     113     126 ..     105     142 .. 0.60
   2 !   16.4  11.1   1.5e-06    0.0089       1      51 [.     171     217 ..     171     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0098
  DnaJ_CXXCXGXG  13 kkktCktCkGsGvv 26 
                    +k+ Ck C+ +G +
     EHU00505.1 113 SKRPCKCCNATGFI 126
                    24557777777743 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.5e-06
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsGvvreeqk.t.lgpfvqqsqstCpeCeGtG 51 
                    C++CkG+      ++ C++CkG+G+ ++e + +  g+    +  +C++C+G+G
     EHU00505.1 171 CPECKGKCV---VSSACRDCKGRGKAMMEAEsKrQGV---PVIGDCKRCGGRG 217
                    ********7...4667********7555544132333...23469*******9 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012        71      12      25 ..     116     129 ..     112     139 .. 0.86
   2 ?    5.7   2.0    0.0024        14      32      43 ..     170     181 ..     164     183 .. 0.83
   3 ?    9.0   1.6   0.00023       1.4      11      41 ..     182     218 ..     180     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
                 E-TTTTTTSEETTE CS
   Anti-TRAP  12 kCdaCngsGkiepe 25 
                 +C+ Cn +G i++e
  EHU00505.1 116 PCKCCNATGFIDAE 129
                 8********99876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0024
                 E-TTTTTSSEEE CS
   Anti-TRAP  32 eCPkCsGkglip 43 
                  CP+C+Gk ++ 
  EHU00505.1 170 LCPECKGKCVVS 181
                 5*******9875 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00023
                 EE-TTTTTTSEETTE........E....-TTTTTSSE CS
   Anti-TRAP  11 tkCdaCngsGkiepe..eprasle....CPkCsGkgl 41 
                  +C  C+g Gk+  e   +r +++    C +C+G+g+
  EHU00505.1 182 SACRDCKGRGKAMMEaeSKRQGVPvigdCKRCGGRGF 218
                 58*********87665577888744444******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2117.43
//
Query:       EHU00506.1  [L=120]
Description: holliday junction resolvase/crossover junction endodeoxyribonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-17   62.5   0.0    6.5e-17   62.2   0.0    1.1  1  RusA      Endodeoxyribonuclease RusA


Domain annotation for each model (and alignments):
>> RusA  Endodeoxyribonuclease RusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   3.6e-21   6.5e-17       1     123 [.       9     114 ..       9     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 3.6e-21
                 E---..-HHHHEEESSSSEEE-HHHHHHHHHHHHHHHHTT-..TT-B-S-EEEEEEEE-SS...............SS---HHHHHHHHHHHH.HTTSB CS
        RusA   1 pgepvgkarprlrkkggrtytpkktkayeeevkaylekqyekdkeplegplkvevtlyfpipkslskkkkqealektkkpDiDNlaKavlDal.ngivw 98 
                 p++p   +++ ++ ++gr +++kk ++y ++v++++++ ++  +  l+g+lkv++++y+p+               + ++D+DNl+Ka lD+l +++v+
  EHU00506.1   9 PWPP--GNNHLFSVFRGRKIKSKKGREYTSAVARQIAESNQ--QYNLTGKLKVKINAYPPT---------------RARRDLDNLFKAPLDSLtQAGVI 88 
                 5677..88999999*************************96..******************...............78********************* PP

                 S-GGGEEEEEEE--TT-...EEEEEE CS
        RusA  99 kDDsqvvdlivekvysee.prvevei 123
                  DDs++ d+++ +    +  r+ev i
  EHU00506.1  89 ADDSLIDDVRMVRCEVVKgGRLEVII 114
                 *******9999755544446888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 965.46
//
Query:       EHU00507.1  [L=96]
Description: uncharacterized DUF1364 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-43  146.9   0.2    1.3e-43  146.7   0.2    1.0  1  DUF1364     Protein of unknown function (DUF1364)
  ------ inclusion threshold ------
      0.096   13.0   0.0       0.17   12.2   0.0    1.4  1  Mur_ligase  Mur ligase family, catalytic domain
        0.1   12.8   0.0       0.11   12.7   0.0    1.1  1  DUF968      Protein of unknown function (DUF968)


Domain annotation for each model (and alignments):
>> DUF1364  Protein of unknown function (DUF1364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.2   2.2e-47   1.3e-43       1      91 [.       2      92 ..       2      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 2.2e-47
                XXX--TTTTS--S---TTT----GGG-EEEE--------------SSSEEEE-HHHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHHTT CS
     DUF1364  1 sklrkaAkGqeCtvripgvCNgnpeTtvlahyrlaglagvglksddllaafaCsachdaidrRtrildaeeaelvhaegvlrTqealekeg 91
                sklr++A+G+eC+vr+pgvCNgnpeT+vlahyr+ g++g+g+k+ddl++a+aCs+chd+idrR+r+l a ea+l+h+egv+rTq al +eg
  EHU00507.1  2 SKLRNEARGRECQVRLPGVCNGNPETVVLAHYRMVGICGTGMKPDDLFGAWACSSCHDEIDRRSRQLPAAEARLAHLEGVIRTQDALLREG 92
                589************************************************************************************9998 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.17       1      18 [.      32      49 ..      32      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                EEEEESTTSCCHHHHHHH CS
  Mur_ligase  1 eihfigidgrgmsagalf 18
                ++ ++gi+g+gm++ +lf
  EHU00507.1 32 HYRMVGICGTGMKPDDLF 49
                689**************9 PP

>> DUF968  Protein of unknown function (DUF968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05      0.11     128     177 ..      17      67 ..      11      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
      DUF968 128 qPCvccg.kraddphhlighGeGkmGskahDLfvlPLcrvhhdelhrdaaa 177
                 +P vc+g  ++++  h    G  + G k  DLf    c + hde+ r + +
  EHU00507.1  17 LPGVCNGnPETVVLAHYRMVGICGTGMKPDDLFGAWACSSCHDEIDRRSRQ 67 
                 799**9955677778888889999********************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 806.34
//
Query:       EHU00508.1  [L=71]
Description: hypothetical protein CKS_2607 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 590.05
//
Query:       EHU00509.1  [L=49]
Description: hypothetical protein CKS_2606 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 437.37
//
Query:       EHU00510.1  [L=153]
Description: NinB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-48  164.3   0.1    1.6e-48  163.8   0.1    1.2  1  NinB      NinB protein
  ------ inclusion threshold ------
      0.047   13.5   0.1      0.064   13.0   0.1    1.2  1  DUF2840   Protein of unknown function (DUF2840)


Domain annotation for each model (and alignments):
>> NinB  NinB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.1   1.8e-52   1.6e-48       2     131 .]       3     132 ..       2     132 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 1.8e-52
        NinB   2 kqtfvlreeaikqnaieaiaslpvdekkplvveikeetRslaqNallwallkdiarqvewagekldaeeWKdlltaalkqatgeeqevvpgleGgfvvl 100
                  q+++lr+++i++n+i+ai++lp++ +kp+++ i+e++Rs +qN+++w+ll+d++ qv+w g+k ++++WKdl+ta ++++++e+q+++pg+ Gg+v++
  EHU00510.1   3 TQRYLLRNSSIRKNCISAIQQLPANPDKPIEIVIQERKRSSDQNRRMWPLLHDLSAQVTWFGQKYTPDDWKDLITALVAKSKNEQQRTAPGIGGGVVMF 101
                 699************************************************************************************************ PP

        NinB 101 gestskmsvkelaeLielieafgaehgVkfs 131
                 g +tskm+v+e+ e+ie i++fg+e++Vkfs
  EHU00510.1 102 GSRTSKMRVSEMVEVIEAIYWFGTEQNVKFS 132
                 ******************************7 PP

>> DUF2840  Protein of unknown function (DUF2840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   7.1e-06     0.064      25     110 ..      40     126 ..      32     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-06
     DUF2840  25 eqildrrrrvvsfaPgavfafvrWaandygTvvsr..ldivravapgeavqtlpfvrpGgeiLLrvegwpkVervleaidavealgid 110
                 ++  d++rr+     + + a v W  + y   +++  +  + a +++e+  t p++  G  +  + +++ +V +++e+i+a+   g +
  EHU00510.1  40 KRSSDQNRRMWPLL-HDLSAQVTWFGQKYTPDDWKdlITALVAKSKNEQQRTAPGIGGGVVMFGSRTSKMRVSEMVEVIEAIYWFGTE 126
                 45566666666555.45779999*999999998874466778889999999******9999999******************887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1218.52
//
Query:       EHU00511.1  [L=91]
Description: hypothetical protein CKS_2604 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 705.60
//
Query:       EHU00512.1  [L=53]
Description: hypothetical protein CKS_2603 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 425.87
//
Query:       EHU00513.1  [L=455]
Description: putative replicative DNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-64  217.0   0.0    1.1e-62  211.7   0.0    2.1  2  DnaB_C      DnaB-like helicase C terminal domain
    4.9e-15   55.5   0.0      1e-14   54.4   0.0    1.6  1  DnaB        DnaB-like helicase N terminal domain
    1.6e-07   30.9   0.1    2.5e-07   30.3   0.1    1.4  1  ATPase      KaiC
    1.1e-06   28.4   0.0    2.1e-06   27.5   0.0    1.4  1  AAA_25      AAA domain
     0.0018   17.6   0.0     0.0042   16.4   0.0    1.6  1  DUF2075     Uncharacterized conserved protein (DUF2075)
     0.0025   18.3   0.0     0.0071   16.8   0.0    1.9  1  AAA         ATPase family associated with various cellular ac
     0.0031   16.2   0.0     0.0044   15.7   0.0    1.2  1  GvpD        GvpD gas vesicle protein
     0.0057   16.7   0.1      0.013   15.5   0.1    1.6  1  AAA_5       AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.025   14.5   0.0    1.6  1  NACHT       NACHT domain
      0.012   15.3   0.0      0.026   14.3   0.0    1.5  1  RuvB_N      Holliday junction DNA helicase RuvB P-loop domain
      0.015   15.1   0.1       0.03   14.0   0.1    1.4  1  AAA_30      AAA domain
      0.019   14.2   0.1      0.039   13.2   0.1    1.4  1  TIP49       TIP49 P-loop domain
      0.029   13.6   0.0      0.059   12.6   0.0    1.4  1  Zeta_toxin  Zeta toxin
      0.052   13.3   0.0       0.11   12.2   0.0    1.5  1  IstB_IS21   IstB-like ATP binding protein
       0.16   12.4   0.0       0.32   11.3   0.0    1.6  1  AAA_16      AAA ATPase domain


Domain annotation for each model (and alignments):
>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.047        56      69     144 ..      82     162 ..      72     169 .. 0.78
   2 !  211.7   0.0   8.9e-66   1.1e-62       2     248 ..     172     416 ..     171     421 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.047
                 HHHHTXX..HHHHHHTTSXHHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHHHHHHHHH...TTEEEEEEEEGGGTBTS CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
      DnaB_C  69 sseaeid..skklrtgklkeedweklteaieelseaklfiddtpaltvseirskarrlkke...kglgliviDyLqlmegs 144
                 ss a+i+  +k++r+  + ++ ++++++a+++l++++ +  ++++  vs i sk++  +++   +++g ++ DyL+++e++
  EHU00513.1  82 SSAANIKawAKRVRQCWMVRTSISEIESALAMLRNVNTHNINQQTAIVSGILSKLQFETNDklpRRIGDLIPDYLNVLEDR 162
                 666677644688999999999**************9987666666679999998886555558899999*******99965 PP

  == domain 2  score: 211.7 bits;  conditional E-value: 8.9e-66
                 BXSSTHHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHT.TSXHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
      DnaB_C   2 lstgfkdLDkltsGlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtg.klkeedweklteaieel 99 
                 l+tg + +D++ +G+ + dliiiA+rp+mGkt la+nia+++  + k + +++s+ems++q+v+R ++ +++++ ++lr+   +++ed+++lt+a+++l
  EHU00513.1 172 LQTGIEAVDNAYGGFDRTDLIIIAGRPGMGKTELAINIANSIGRQ-KGKGLMMSMEMSETQVVERHIADRGGLSITTLRNPlGMDQEDYTRLTTATGTL 269
                 689**************************************9975.5578999**************************985799************** PP

                 HHSEEEEEEXSSXCHHHHHHHHHHHHHHTTEEEEEEEEGGGTBTSCSSSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXXHHHHCCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 100 seaklfiddtpaltvseirskarrlkkekglgliviDyLqlmegseekenreqevseisrsLkalakelnvpvialsqLsravesredkrPvlsDLreS 198
                  + + ++    ++tv ei ++a rl++++gl+++ iDyL l++ ++ +e+    ++e++r+Lk++    +vpvi l+qL+r+v+ r+dkrP + DL  S
  EHU00513.1 270 IDEDNYVLA-GSFTVDEIIAQAERLNMDGGLSFLAIDYLTLIDMPK-AERMDLAIAEVTRKLKQFCLRNKVPVILLAQLNRKVDDRADKRPNMGDLAGS 366
                 **9999987.569******************************755.5666779********************************************* PP

                 TSCCCCXSEEEEEEECCHHHHHHCHHCEEEEEEEEETTSXXEEEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 199 gsieqdADvvlflyrdeyykedseekgkaeiiiaKhRnGptgtvklafek 248
                  sie+dADv++f yrde+y+++s+ kg+ae+i+ K R+G+ +t  + +++
  EHU00513.1 367 SSIEKDADVIFFPYRDEVYNDNSDMKGIAELIVGKYRSGQPQTFYMGWRN 416
                 ********************99999****************999988875 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   8.7e-18     1e-14       5     103 .]       3      96 ..       1      96 [. 0.92

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 8.7e-18
                 HHHHHHHHHHHHHHSTTHHH..HHHCC--GGGSSSHHHHHHHHHHHHHHHTTTS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC-S-CCCHHHHHHHH CS
        DnaB   5 sieaEqavLgalLldpeaid..evadilkpedFyepahrliFeailelyekgepiDlvtvkeelekkgkledvggaaylaelvaavpsaanieeyaeiv 101
                 s++ Eq+++g++L++ ++id  e+a++l ++ F + + r+ + ai +l +k+epiD+ tv++ + +++       ++y+ +l+++++saani+++a+ v
  EHU00513.1   3 SLDFEQQLIGSMLIKGDHIDsrEIASKLPADAFANHHLRNMYSAICRLLDKSEPIDPFTVRDGIPEES-------RDYVLTLAKNCSSAANIKAWAKRV 94 
                 6899**********988665339*****************************************8876.......57********************99 PP

                 HH CS
        DnaB 102 ke 103
                 ++
  EHU00513.1  95 RQ 96 
                 85 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   2.1e-10   2.5e-07       2      79 ..     173     250 ..     172     358 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.1e-10
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlren..akslGwdleklee 79 
                 +tgIe  D+   gG+ +   + i+G pG GKt +a + + +++ +   +g++ ++e +++++ e+  a + G  ++ l++
  EHU00513.1 173 QTGIEAVDNAY-GGFDRTDLIIIAGRPGMGKTELAIN-IANSIGRQKGKGLMMSMEMSETQVVERhiADRGGLSITTLRN 250
                 8*********6.***********************98.779999999************999887223455666666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.7e-09   2.1e-06      18     190 ..     175     347 ..     162     351 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.7e-09
      AAA_25  18 pppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal...........rddarllv 105
                  ++ ++  ++g+  + +l+++aG+pg GKt la+++a ++ +          ++gk l+ s E+se ++ +R  a +  l           ++ +  ++
  EHU00513.1 175 GIEAVDNAYGGF-DRTDLIIIAGRPGMGKTELAINIANSIGR----------QKGKGLMMSMEMSETQVVERHIADRGGLsittlrnplgmDQEDYTRL 262
                 566777778888.89************************986..........568***********999999998888888898899888544444444 PP

      AAA_25 106 ldlagveslpLfakdrggtl....ltadvdaleaaieevegvrlvviDplsralgg.densnsdvgalvealeriarrtgaavllvhHvg 190
                 +++ +    +L+++d+   +    +++ +++ e +++   g+ ++ iD l+ +     e  + +++++  +l++++ r ++ v+l+ +++
  EHU00513.1 263 TTA-T---GTLIDEDNYVLAgsftVDEIIAQAE-RLNMDGGLSFLAIDYLTLIDMPkAERMDLAIAEVTRKLKQFCLRNKVPVILLAQLN 347
                 443.3...3566555433333222444444433.3333366***********9888677777788********************98876 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06    0.0042       3      55 ..     191     241 ..     189     267 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.5e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke 55 
                 ++++ G++G GKt +++n+++ +   +++ +  ++s   ++ +v+++++a + 
  EHU00513.1 191 LIIIAGRPGMGKTELAINIANSI--GRQKGKGLMMSMEMSETQVVERHIADRG 241
                 79*********************..99999999************99998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.9e-06    0.0071       1     115 [.     192     350 ..     192     359 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.9e-06
                 EEEESSTTSSHHHHHHHHHHHHTHE.......EEEEETTTCSSS.......................................STTHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgve.......fleisgsellsk.......................................yvgesekkirelfkea 53 
                 +++ G pG+GKT la  +a+++g++        +e+s +++++                                        yv +++  + e++++a
  EHU00513.1 192 IIIAGRPGMGKTELAINIANSIGRQkgkglmmSMEMSETQVVERhiadrgglsittlrnplgmdqedytrlttatgtlidednYVLAGSFTVDEIIAQA 290
                 5789*****************974444555335666666666446777777777777788888888888888888888888888888888888888888 PP

                 HHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  54 keka...kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                 ++ +   + s l iD +  +   +     e  + ++++  ++l+++  + +kv vi+ ++  +k+
  EHU00513.1 291 ERLNmdgGLSFLAIDYLTLIDMPK----AERMDLAIAEVTRKLKQFCLR-NKVPVILLAQLNRKV 350
                 887777555777777666664333....344444555555555555553.446666666655555 PP

>> GvpD  GvpD gas vesicle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.7e-06    0.0044      12      70 ..     191     258 ..     184     343 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.7e-06
        GvpD  12 tllikGaPGtGktlftlrgldvlrre.sdvlyvstrvddetvseayfsgeaeldktall........d 70 
                  ++i G+PG Gkt ++++  +++ r+ ++ l +s    +  v e ++++++ l+ t l         d
  EHU00513.1 191 LIIIAGRPGMGKTELAINIANSIGRQkGKGLMMSMEMSETQVVERHIADRGGLSITTLRnplgmdqeD 258
                 5799*******************77526889***********************88765555555552 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.1e-05     0.013       2      47 ..     192     238 ..     191     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrrei 47 
                 +++ G pG gK+ela  +a  + +++    +++  ++e++++ r   
  EHU00513.1 192 IIIAGRPGMGKTELAINIANSIgRQKGKGLMMSMEMSETQVVERHIA 238
                 5899******************99999**************998765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.1e-05     0.025       2      32 ..     191     221 ..     190     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqg 32 
                 l+i+ G++G+GKT L+  +a  + ++k ++ 
  EHU00513.1 191 LIIIAGRPGMGKTELAINIANSIGRQKGKGL 221
                 79********************999997774 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.2e-05     0.026      31      59 ..     187     215 ..     172     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.2e-05
      RuvB_N  31 ealdhvllyGpPGlGkttlakiiakelgv 59 
                 +  d ++++G PG+Gkt la  ia+ +g 
  EHU00513.1 187 DRTDLIIIAGRPGMGKTELAINIANSIGR 215
                 56899********************9986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.5e-05      0.03      19     115 ..     190     293 ..     177     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa....eelgieastiakllkrlk.grarlepgtllivDEagmv..dtkqlaallk 110
                  + ++ G++G GKt +   +++ + +++g+ ++++ +    +v++    +  g+   t+ + l   + + +rl+++t  ++DE   v  ++ +++++++
  EHU00513.1 190 DLIIIAGRPGMGKTELAINIANSIGRQKGKGLMMSMEMSETQVVErhiaDRGGLSITTLRNPLGMDQeDYTRLTTATGTLIDEDNYVlaGSFTVDEIIA 288
                 47899**********99999888888865666666555555555511116666888999999988879778999*********8877669999999999 PP

      AAA_30 111 aaeka 115
                 +ae+ 
  EHU00513.1 289 QAERL 293
                 99875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.2e-05     0.039      53      79 ..     192     218 ..     188     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  53 vLlaGpsgtGktalaiaiskelgedvp 79 
                 +++aG +g Gkt lai i++++g++  
  EHU00513.1 192 IIIAGRPGMGKTELAINIANSIGRQKG 218
                 89*********************7654 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.059      14      44 ..     187     217 ..     177     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqg 44 
                 +r +li+++G pG GK+ela  ++++++rq+
  EHU00513.1 187 DRTDLIIIAGRPGMGKTELAINIANSIGRQK 217
                 66789******************99998665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.3e-05      0.11      45      75 ..     187     217 ..     181     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.3e-05
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavrag 75 
                 ++ + i++ G +G+GK+ lai ++ +  r+ 
  EHU00513.1 187 DRTDLIIIAGRPGMGKTELAINIANSIGRQK 217
                 577889*****************99877654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027      0.32      23      51 ..     188     216 ..     172     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd 51 
                 r+ l+++ G +G+GK+ l+  +++++ ++
  EHU00513.1 188 RTDLIIIAGRPGMGKTELAINIANSIGRQ 216
                 44799****************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3249.78
//
Query:       EHU00514.1  [L=321]
Description: putative phage replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-06   26.5   0.2    1.6e-05   25.4   0.0    1.7  2  Phage_rep_O  Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.8e-10   1.6e-05       1      95 []      19     130 ..      19     130 .. 0.92
   2 ?   -3.7   0.0         1   1.8e+04      56      74 ..     160     178 ..     155     184 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.8e-10
  Phage_rep_O   1 rkadlddGYtrlanelleall...rakltkrqlkillavir.ktYgfkkksdwisnsqlveltg.............isrtkvskalkeLirekviik 81 
                  r+++++ G   l ++ll + +    ak++ + + i la ++ +t  f + s++++ +qlv+ +               s+++v+++l+++++ek+i+ 
   EHU00514.1  19 RMENQKQGHFALFRSLLSKDWasdTAKFSLWVRIIGLAQWKpRTVEFDGVSWDLQPGQLVTKVPylarklkdsqgneKSPKQVRDMLEFFTKEKMITF 116
                  79*****************99777778887777777888875799****************999***********999999***************** PP

  Phage_rep_O  82 egrkvgvnkniseW 95 
                   g++ g +++i ++
   EHU00514.1 117 AGNRHGTVITIINY 130
                  **********9887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
  Phage_rep_O  56 veltgisrtkvskalkeLi 74 
                  ve+t+  +++v++ +k L 
   EHU00514.1 160 VEVTKKVTNEVEQSKKLLE 178
                  5566666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2422.15
//
Query:       EHU00515.1  [L=61]
Description: hypothetical protein CKS_2600 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 460.77
//
Query:       EHU00516.1  [L=305]
Description: hypothetical protein CKS_2599 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2399.34
//
Query:       EHU00517.1  [L=197]
Description: hypothetical protein CKS_2598 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0042   16.2   2.0     0.0062   15.7   2.0    1.2  1  Atg14     Vacuolar sorting 38 and autophagy-related subunit 1


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.0   3.5e-07    0.0062      24     107 ..     112     195 ..     100     197 .] 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.5e-07
       Atg14  24 lyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklakl 107
                 l e++ + a+l s  e+l+k+ e++l   eeae+++ + + +++kl   k +i++ +  +q+ +d l   ++ ++++ +kl+ l
  EHU00517.1 112 LQEKKMESANLSSSPEALRKQAEQLLRAAEEAEKKRFDTDFLNKKLAPVKLEICQAHGLIQRKMDELIDATDLLNKAVQKLKDL 195
                 889*****************************************************9999999999999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1522.99
//
Query:       EHU00518.1  [L=272]
Description: hypothetical protein CKS_2597 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-63  209.7  25.0    2.9e-15   55.5   1.0    4.9  4  Pentapeptide    Pentapeptide repeats (8 copies)
    5.8e-25   87.2   0.0    5.5e-06   26.4   0.0    4.4  3  Pentapeptide_3  Pentapeptide repeats (9 copies)
    1.9e-19   69.6   0.0    1.7e-08   34.5   0.0    3.4  2  Pentapeptide_4  Pentapeptide repeats (9 copies)


Domain annotation for each model (and alignments):
>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.7   6.5e-19   3.9e-15       4      40 .]      25      61 ..      25      61 .. 0.91
   2 !   54.5   2.5   1.1e-18   6.3e-15       1      40 []      67     106 ..      67     106 .. 0.98
   3 !   54.1   0.7   1.4e-18   8.5e-15       1      40 []     107     146 ..     107     146 .. 0.96
   4 !   55.5   1.0   4.9e-19   2.9e-15       1      40 []     147     186 ..     147     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 6.5e-19
                  TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide  4 sgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40
                  s+A+L+ga+L+ga l+gA+L+gA+lsgAdLsga+L+g
    EHU00518.1 25 SRADLRGADLRGAYLRGADLSGADLSGADLSGADLRG 61
                  6899999999999999999999999999999999998 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 1.1e-18
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   A+L+gA+Lsga+Ls+a+l+gA L++A+l+gAdLs+a+Lsg
    EHU00518.1  67 ADLRGADLSGADLSDADLRGAYLRDADLRGADLSDADLSG 106
                   89************************************98 PP

  == domain 3  score: 54.1 bits;  conditional E-value: 1.4e-18
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   A L+gA+Lsga+L+ga l++A+L+gA+ls+AdLsga L++
    EHU00518.1 107 AYLRGADLSGADLRGAYLRDADLRGADLSDADLSGAYLRD 146
                   779***********************************97 PP

  == domain 4  score: 55.5 bits;  conditional E-value: 4.9e-19
                   -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   A+L+gA+L+ga+L+ga l++A+L+gA+ls+AdLsga L++
    EHU00518.1 147 ADLRGADLRGADLRGAYLRDADLRGADLSDADLSGAYLRD 186
                   89************************************97 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   9.2e-10   5.5e-06       2      46 ..      45      86 ..      24      87 .. 0.63
   2 !   24.4   0.0   4.1e-09   2.4e-05       2      47 ..      55      97 ..      54     107 .. 0.81
   3 !   25.1   0.0   2.4e-09   1.4e-05      28      47 ..     114     132 ..      89     186 .. 0.56

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 9.2e-10
  Pentapeptide_3  2 sganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsg 46
                    sga +sga d++ga  +ga + ++ad+++ad+sga  + d+d++g
      EHU00518.1 45 SGADLSGA-DLSGADLRGA-YLRDADLRGADLSGADLS-DADLRG 86
                    45556666.6666666666.566666666666666666.666665 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 4.1e-09
  Pentapeptide_3  2 sganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47
                    sga ++ga ++r+a  +ga + s+ad+++ad++ga    d+d++ga
      EHU00518.1 55 SGADLRGA-YLRDADLRGA-DLSGADLSDADLRGAYLR-DADLRGA 97
                    67888888.8888888888.888888888888888887.8888876 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 2.4e-09
  Pentapeptide_3  28 FgsadFsgarFtgdvdFsga 47 
                     +++ad++ga    d+d++ga
      EHU00518.1 114 LSGADLRGAYLR-DADLRGA 132
                     333333333333.3333333 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   5.2e-10   3.1e-06       8      75 ..      29      97 ..      23      99 .. 0.57
   2 !   34.5   0.0   2.8e-12   1.7e-08       2      76 ..     103     178 ..     102     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 5.2e-10
  Pentapeptide_4  8 fnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdi 75
                    +++++l ++ ++ a+l ++++++++ls + ++ + l+d+d++++dl  a +s  +l+++ ++d  l+++
      EHU00518.1 29 LRGADLRGAYLRGADLSGADLSGADLSGADLRGAYLRDADLRGADLSGADLSDADLRGAYLRDaDLRGA 97
                    344444444444444444444444446666777777777777777777777777777777755466665 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 2.8e-12
  Pentapeptide_4   2 eftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd.klkdid 76 
                     +++ + +++++ls+++++ a+lrd+++++++ls++ ++ + l+d+d++++dl+ a + g  l+++ +++  l d+d
      EHU00518.1 103 DLSGAYLRGADLSGADLRGAYLRDADLRGADLSDADLSGAYLRDADLRGADLRGADLRGAYLRDADLRGaDLSDAD 178
                     5666778999******************************************************999986898887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       179  (0.00998383); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1915.21
//
Query:       EHU00519.1  [L=48]
Description: hypothetical protein CKS_2596 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 384.41
//
Query:       EHU00520.1  [L=58]
Description: hypothetical protein CKS_2595 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 515.20
//
Query:       EHU00521.1  [L=290]
Description: hypothetical protein CKS_2594 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-29  100.5   0.0    1.3e-28  100.0   0.0    1.1  1  AAA_24    AAA domain
     0.0083   16.4   0.0      0.018   15.3   0.0    1.6  1  AAA_22    AAA domain
  ------ inclusion threshold ------
       0.05   14.0   0.0       0.11   12.9   0.0    1.7  1  AAA       ATPase family associated with various cellular acti
      0.058   12.8   0.1      0.092   12.2   0.1    1.3  1  Pox_A32   Poxvirus A32 protein
      0.074   13.0   0.5         13    5.7   0.0    2.4  2  NTPase_1  NTPase
       0.11   13.0   0.0       0.23   12.0   0.0    1.5  1  AAA_18    AAA domain
       0.13   12.6   0.0       0.63   10.4   0.0    2.0  2  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0   5.2e-32   1.3e-28       2     187 ..      12     207 ..      11     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 5.2e-32
      AAA_24   2 klkiliyGpsgiGKTtlakel....gpkplfidtekGlksldadkfpdie........swedfldevvelaaeladyktlviDtideleelclaevirq 88 
                 kl+++++Gpsg+GKT++a+      g k+++idtekG++sl+ d  +           + e f+++++  aae+a+y++l+iD+i++ +  +   +   
  EHU00521.1  12 KLRLALTGPSGSGKTYSALLVakgiGGKIAVIDTEKGSASLYSDIAD-FDvleleppfTPERFIEAIN--AAEQAGYDSLIIDSITHEWGGVGGCLELV 107
                 7899*************************************988755.22244777666667776664..679************************** PP

      AAA_24  89 nekaeskedkgdgkGygelaeefrrllkklqelrknvifiahektrkdedpegeakytrlepklgkktanelkeevDlvlranlkred..kvgervlkt 185
                 + +a+ k  ++++++++e+++++r++l+++     ++i+++++kt++ + +e +  +   ++ l++   + +++e+++vl++  +++   ++  r+  +
  EHU00521.1 108 DTIAKAKYRGNSWSAWSEINPRHRSFLDAILRSSMHIIATMRSKTETAQVEENG-RKKVAKLGLKSEQRDGVEYEFTTVLDIGHETHHaiASKDRTKLF 205
                 *************************************************99777.7888888888888999************9987777555555555 PP

      AAA_24 186 sk 187
                 s+
  EHU00521.1 206 SN 207
                 44 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.1e-06     0.018       7      98 ..      14      91 ..       7     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.1e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiD 98
                 l++tG+sG+GKT+++  +++           + +++ ++  +++  ++l+++++ +  lel+  + + e+++ea++ a +a ++   liiD
  EHU00521.1 14 RLALTGPSGSGKTYSALLVAKGI---------GGKIAVIDTEKGS--ASLYSDIADFDVLELEP-PFTPERFIEAINAAEQAGYD--SLIID 91
                589***************99997.........5554455544444..88888888877777777.77888888888887777777..66666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.3e-05      0.11       2      30 ..      16      44 ..      15      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-05
                EEESSTTSSHHHHHHHHHHHHTHEEEEEE CS
         AAA  2 llyGppGtGKTllakavakelgvefleis 30
                 l+Gp G GKT+ a  vak +g ++  i+
  EHU00521.1 16 ALTGPSGSGKTYSALLVAKGIGGKIAVID 44
                599****************9976655444 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.6e-05     0.092       3      30 ..       2      29 ..       1      43 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.6e-05
     Pox_A32  3 rFdresLlkkpFrlalvGgsGsGktvyL 30
                +F+++  +k++ rlal+G sGsGkt   
  EHU00521.1  2 KFEKAMRKKAKLRLALTGPSGSGKTYSA 29
                7888889999***************754 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0073        19       2      20 ..      15      33 ..      14      46 .. 0.81
   2 ?    5.7   0.0    0.0051        13     115     163 ..     131     178 ..     126     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0073
                EEEE--TTSSHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvl 20
                +++TGp+G+GKt     v+
  EHU00521.1 15 LALTGPSGSGKTYSALLVA 33
                78**********7766665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0051
                 HHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE--TTTTTTH CS
    NTPase_1 115 keaveevLksekpvlavihrrkdlalveeirerkdvkvfevteenrdal 163
                 ++ ++ +L+s+  ++a+++ +++ a vee  + k+v  + ++ e+rd +
  EHU00521.1 131 RSFLDAILRSSMHIIATMRSKTETAQVEENGR-KKVAKLGLKSEQRDGV 178
                 667899***************98888888776.4788888999999866 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.9e-05      0.23       2      86 ..      16      97 ..      15     101 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.9e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe..aldeskrldedkldklldaleenssaleegknlvidghlael 86
                +ltG++G+GKt  a  ++k  g  + ++d+ k + +l+++ ++   l+ +  +  ++  ++++a e+     +  ++l+id++  e+
  EHU00521.1 16 ALTGPSGSGKTYSALLVAKGIGGKIAVIDTEKGSASLYSDIADfdVLELEPPFTPERFIEAINAAEQ-----AGYDSLIIDSITHEW 97
                59**********9999999753377777777777777777777644444444444444555555555.....457999999998876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00025      0.63      25      51 ..      13      39 ..       3      92 .. 0.78
   2 ?   -0.2   0.0      0.44   1.1e+03      68     125 ..     128     184 ..     104     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                  + l+G+sG+GK+  +  +++ + ++
  EHU00521.1 13 LRLALTGPSGSGKTYSALLVAKGIGGK 39
                5688**********9999988877777 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.44
      AAA_16  68 pysa.laqalareellrqllde...aesaeleawrekleealaavpelagaeasrllellkr 125
                 p+   +++a+ r + +  ++++   +e+a++e+  +k  + l+    l+++++  + ++++ 
  EHU00521.1 128 PRHRsFLDAILR-SSMHIIATMrskTETAQVEENGRKKVAKLG----LKSEQRDGVEYEFTT 184
                 444447888855.777777777333444444444444444333....444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2565.36
//
Query:       EHU00522.1  [L=137]
Description: single-stranded DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-31  106.3   0.6      1e-30  105.9   0.6    1.2  1  SSB       Single-strand binding protein family
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.065   13.1   0.0    1.5  1  DUF4792   Domain of unknown function (DUF4792)


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.6   1.1e-34     1e-30      19      99 ..       1      82 [.       1      90 [. 0.94

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.1e-34
                ETTSEEEEEEEEEEEEEEEE.TTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEEE CS
         SSB 19 tesGnavarftlatnrrfkd.qegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrysteivae 99
                +++G ava++tlat+++++d q+ge++e tewhrvv+fgklaev+ eyl+kGs+vy+eG+l+trk++dq gq+ry+te+ ++
  EHU00522.1  1 MPNGGAVANITLATSESWRDkQTGENKEVTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWQDQGGQERYTTEVLVN 82
                69*****************************************************************************998 PP

>> DUF4792  Domain of unknown function (DUF4792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.3e-06     0.065      13      57 ..      21      66 ..      11      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.3e-06
     DUF4792 13 PplsvktnwseskklsveddshkewgyyLnkGSqvnisycvks.ss 57
                +++ ++++++e + +++  +  +  g+yL kGSqv i+ + ++ ++
  EHU00522.1 21 KQTGENKEVTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTrKW 66
                678888899999*************************988887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1103.02
//
Query:       EHU00523.1  [L=104]
Description: hypothetical protein CKS_2592 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.12   12.6   0.0    1.2  1  BATS      Biotin and Thiamin Synthesis associated domain


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.4e-06      0.12      27      56 ..      39      68 ..       9      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-06
                SECCCTCHH-HHHHHHHHHCCT--EEE-C- CS
        BATS 27 agillsgResaefrdqlllklGansisags 56
                ++ l s+Re++e+rd  +lk  + +i  ++
  EHU00523.1 39 VKVLFSTRETQEERDAWMLKSMVRQIAENN 68
                45899***********998***99998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1468  (0.0818785); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 824.35
//
Query:       EHU00524.1  [L=51]
Description: hypothetical protein CKS_2591 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 442.50
//
Query:       EHU00525.1  [L=117]
Description: hypothetical protein CKS_2590 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0049   17.1   0.1     0.0068   16.7   0.1    1.2  1  DUF1024   Protein of unknown function (DUF1024)
  ------ inclusion threshold ------
      0.076   13.3   0.1       0.13   12.5   0.1    1.4  1  HALZ      Homeobox associated leucine zipper
      0.085   12.9   0.2       0.14   12.2   0.2    1.3  1  DHR10     Designed helical repeat protein 10 domain
       0.14   10.9   0.0       0.14   10.9   0.0    1.1  1  Adeno_PV  Adenovirus minor core protein PV


Domain annotation for each model (and alignments):
>> DUF1024  Protein of unknown function (DUF1024)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.5e-06    0.0068      15      63 ..      15      63 ..       3      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
     DUF1024 15 sayngndtegllkeiedvykkaqafdeilegmtnaiqhsvkegieldea 63
                 a n nd eg +   ed     q +d ++ g+ +ai+h  +  +eld a
  EHU00525.1 15 QAINYNDPEGEFVYYEDYAALQQKMDALVGGFEEAIRHKDRLAVELDAA 63
                58899******************************************87 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.9e-05      0.13       6      42 ..      31      67 ..      30      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
        HALZ  6 DYdvLKasYdaLksdydsLkkenekLkaelqeLkekl 42
                DY++L+++ daL   ++   +++++L  el   +ekl
  EHU00525.1 31 DYAALQQKMDALVGGFEEAIRHKDRLAVELDAANEKL 67
                9*****************************9888887 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   3.1e-05      0.14      61     108 ..      34      81 ..      30      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
       DHR10  61 elrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaa 108
                 +l+++++ +    +e  r+++rl   l+ a+ekl+r+  +a + ++ a
  EHU00525.1  34 ALQQKMDALVGGFEEAIRHKDRLAVELDAANEKLSRYSMSAGQADQFA 81 
                 67888888888899************************9998877755 PP

>> Adeno_PV  Adenovirus minor core protein PV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.1e-05      0.14     102     152 ..      29      80 ..       9     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
    Adeno_PV 102 ygdedlleqane.rlgefaygkrhkdmlalpldegnptpslkpvtlqqvlpt 152
                 y d   l+q  +  +g f    rhkd la+ ld  n   s   ++  q    
  EHU00525.1  29 YEDYAALQQKMDaLVGGFEEAIRHKDRLAVELDAANEKLSRYSMSAGQADQF 80 
                 4555566665551579********************9888776666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 933.09
//
Query:       EHU00526.1  [L=221]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1727.28
//
Query:       EHU00527.1  [L=53]
Description: hypothetical protein CKS_2588 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 438.50
//
Query:       EHU00528.1  [L=68]
Description: hypothetical protein CKS_5754 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 552.42
//
Query:       EHU00529.1  [L=164]
Description: hypothetical protein CKS_2587 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1297.33
//
Query:       EHU00530.1  [L=197]
Description: putative adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-25   89.8   0.0    2.1e-25   89.6   0.0    1.0  1  MT-A70    MT-A70


Domain annotation for each model (and alignments):
>> MT-A70  MT-A70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   1.2e-29   2.1e-25       1     172 []       5     176 ..       5     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 1.2e-29
                 ECEEEE---BHHCC..HTT....--SS--B-HHHHHTS-GGGCECC.EEEEEEEEETTCHHHHHHHHHHHCT-EEEE..EEEEEEE-TTSCBS-BS-TT CS
      MT-A70   1 fdviiidPpweeklvarkk....elpyktlneeelkaLpipelldk.rslvflWvtnrellelkrellkkWglelve..eltwlkinklgepiatlesg 92 
                 + +i +dPpw+++  a +       +y  ++ +++ +Lp+ +l+d+  +l+++W    + +e+  ++ + Wg++l++   +tw k+n+ +   a    g
  EHU00530.1   5 YRLIYADPPWSYRDKANDGsrgaCHKYPVMTLQDICRLPVWSLADPeSCLLAMWWVPTQPMEA-LKVVEAWGFRLMTmkGFTWHKTNRRKGNSA-IGMG 101
                 789*********99766658887778999****************978999999887777777.799*******9752269******6655555.89** PP

                 SSSBB-EEEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHCTCS-EEEET--G--TTEEEEETT CS
      MT-A70  93 avlkkskEhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehllesarkLelFaRslrpgwltvGne 172
                 ++ +   E +l +vkg   + +d +i     ++ + +p+ ehs KP+ + + l +l  + +++elFaR +  gw+++Gne
  EHU00530.1 102 HMTRANSEDCLFAVKGRLPERMDASI-----CQHVSAPRMEHSAKPQIIRDSLVRLIGDVPRIELFARTADQGWDSWGNE 176
                 *******************9999976.....889999*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1537.44
//
Query:       EHU00531.1  [L=427]
Description: putative integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-20   71.9   0.1    9.5e-20   70.3   0.0    1.9  2  Arm-DNA-bind_2   Arm DNA-binding domain
      2e-19   70.0   0.0    4.3e-19   69.0   0.0    1.5  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_2  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   1.1e-23   9.5e-20       1      64 [.       5      67 ..       5      68 .. 0.96
   2 ?   -3.5   0.0       1.2   1.1e+04      21      38 ..     107     124 ..     102     127 .. 0.72

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 1.1e-23
  Arm-DNA-bind_2  1 pggVeirsggklridFrykGkrcreslglpdtpanrKkaerllaeIeeeIalGtFdYakyFPqS 64
                    p+gV    ++ lri+F+y+Gkr  e lg+pdtp+nrK a++l+ +I  +I++GtFdY+ +FP+S
      EHU00531.1  5 PTGVAPN-KNHLRIWFMYEGKRRWEALGIPDTPKNRKMAGELRSNIVYRIKTGTFDYRGQFPDS 67
                    5788888.99*****************************************************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
  Arm-DNA-bind_2  21 krcreslglpdtpanrKk 38 
                     +r+r +l+++ +++ +++
      EHU00531.1 107 RRVRVTLDIIGNKRDIRS 124
                     688888888888877775 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   4.8e-23   4.3e-19       3     166 ..     201     393 ..     200     397 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 4.8e-23
                      HHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE.........EEECSSSSEEEEECTHHHHHHHHHHHHHH CS
  Phage_integrase   3 ltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh.........eregKgskeravplseealellkellska 87 
                      +t +e  rl++ +++    +++++  l+  tGlR +El++L+++d+dle g++ v          +  +++   r++ l ++a e l+++ + +
       EHU00531.1 201 ITREEFPRLINGCNN---QQNANMWSLAIMTGLRHGELCALSWEDIDLEAGTLSVSrsltpqgifTPPKTEAGIRTICLMDAAIEILRNQRQLT 291
                      57899999**99999...99***********************************999999999766666666799999999999999998888 PP

                      CHCCTTTSBSSBET........................TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT- CS
  Phage_integrase  88 leeaeksellfask........................rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGH 157
                       +  ++++++f  +                         g   s++++ +++ +a ++ag+  + +  + Rh+fa + l ag++++ v++ +GH
       EHU00531.1 292 -RMFPQTSFIFHTReygeriedqktfvfnpsinsvngkSGAYYSTESLGQIWTSALKRAGLR-HRKAYQSRHTFACWSLAAGANPNYVASQMGH 383
                      .778888888888888888888888888888*****9999999*******************.******************************* PP

                      SSCCHH.HHH CS
  Phage_integrase 158 ssistt.qiY 166
                      s+ +++ ++Y
       EHU00531.1 384 SDAQMVyRVY 393
                      ******9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3627.87
//
Query:       EHU00532.1  [L=103]
Description: flagellar basal-body component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-28   98.4   7.2    2.4e-28   98.1   7.2    1.1  1  FliE      Flagellar hook-basal body complex protein FliE


Domain annotation for each model (and alignments):
>> FliE  Flagellar hook-basal body complex protein FliE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   7.2   1.3e-32   2.4e-28       7      89 .]      19     103 .]      12     103 .] 0.89

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.3e-32
        FliE   7 ssakaaaaasae.sFasvLksaleevnetqkeaeelaeafalGes.vdlhdvmialqkAslslqltvqVRnklveAYqeImrmqv 89 
                 ++++++++ ++  +F++++k+al++++etq++a+++a+af++G++ v l+dvm++lqk+s+s+q+ +qVRnklv+AY +Im+mqv
  EHU00532.1  19 QANNKSDEVNSHiDFGATMKAALDKISETQTTARSQAQAFEMGKPgVALNDVMVDLQKSSISMQMGIQVRNKLVSAYTDIMNMQV 103
                 3344444445566***********************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 834.13
//
Query:       EHU00533.1  [L=572]
Description: flagellar basal-body MS-ring and collar protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-78  263.0   2.4    3.1e-77  258.6   0.0    2.9  4  YscJ_FliF      Secretory protein of YscJ/FliF family
    9.1e-47  159.2  21.0    9.1e-47  159.2  21.0    3.1  3  YscJ_FliF_C    Flagellar M-ring protein C-terminal
      0.001   19.3   0.1     0.0021   18.3   0.1    1.4  1  DUF3272        Protein of unknown function (DUF3272)
  ------ inclusion threshold ------
      0.025   14.4   0.3      0.025   14.4   0.3    1.7  2  CbtA           Probable cobalt transporter subunit (CbtA)
      0.064   13.5   0.0       0.16   12.2   0.0    1.6  1  Ectoine_synth  Ectoine synthase
       0.22   11.7   0.9        3.5    7.8   0.2    2.6  2  DUF1206        Domain of Unknown Function (DUF1206)


Domain annotation for each model (and alignments):
>> YscJ_FliF  Secretory protein of YscJ/FliF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   0.0     1e-80   3.1e-77       2     193 ..      35     224 ..      34     225 .. 0.98
   2 ?   -2.5   0.0       1.2   3.4e+03      73     118 ..     340     384 ..     335     389 .. 0.68
   3 ?    2.7   0.3     0.029        85      45      97 ..     401     451 ..     389     457 .. 0.68
   4 ?   -2.5   0.1       1.1   3.4e+03       7      38 ..     478     509 ..     475     550 .. 0.50

  Alignments for each domain:
  == domain 1  score: 258.6 bits;  conditional E-value: 1e-80
   YscJ_FliF   2 vaaviaaivvlvlwlsrpeyevLysnlsekdaaeivekLdeegipyklsddggtilVpedqvsearlklaseglpksgssvgfelfdkkssfgtTdfee 100
                 +aa+ia+++ lvlw+++p+y vL+snls++d ++iv++L+++++py+++d+gg+++Vped+v+e+rl+la++glpk g +vgfel+d k++fg+++f e
  EHU00533.1  35 AAAAIAVVFSLVLWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQGLPKGG-NVGFELLD-KEKFGISQFSE 131
                 7999***********************************************************************887.8*******.889******** PP

   YscJ_FliF 101 qvkyqralegeLartiesldgVesArVhlalPeksvfvreqkepsAsVvlklkpgrelseeqvkaIvnlVasaVpglkpenVtvvDqkgnlLs 193
                 qv+yqralegeLartiesl +V+ ArVhla+P+ ++fvreqk psAsV+l+l+pgr l+e q++aI+++V+s+V gl+p nVtvvDq+g+lL+
  EHU00533.1 132 QVNYQRALEGELARTIESLGPVKTARVHLAMPKPTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224
                 *******************************************************************************************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
   YscJ_FliF  73 eglpksgssvgfelfdkkss.fgtTdfeeqvkyqralegeLarties 118
                 +g  ++g  ++ e   + +s  +t++   + +    ++ eL rti++
  EHU00533.1 340 NGQNANG--QNNEANGQRTStASTSSVPTNSRRDDTVNYELDRTIRH 384
                 5555444..34444444444478888888999999999999999986 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.029
   YscJ_FliF  45 ipyklsddggtilVpedqvsearlkl.aseglpksgssvgfelfdkkssfgtTd 97 
                 ++y+ +d+g++i  +e+q+++++ +   + g+ ++ +++++++++  s+f tT+
  EHU00533.1 401 VNYREDDKGKAIALNEQQLKQIENLTrEAMGYSQT-RGDTVNVVN--SQFNTTE 451
                 67888888888888888888886443044555533.356666666..6687776 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.1
   YscJ_FliF   7 aaivvlvlwlsrpeyevLysnlsekdaaeive 38 
                 +a+v+++l+ +     vL ++  e+ aae  +
  EHU00533.1 478 VALVAFILYRKMVRPHVLRKKAAEQAAAEAQA 509
                 55555555555555555554444443333322 PP

>> YscJ_FliF_C  Flagellar M-ring protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.74   2.2e+03     112     133 ..     184     205 ..     168     215 .. 0.80
   2 !  159.2  21.0     3e-50   9.1e-47       1     150 []     256     447 ..     256     447 .. 0.89
   3 ?    1.4   0.1      0.13   3.8e+02      65     108 ..     502     545 ..     471     561 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.74
  YscJ_FliF_C 112 keakplsaeelaqieklvkeAv 133
                  +  ++l++ +++ i+++v+++v
   EHU00533.1 184 QPGRALDEGQIQAITHMVSSSV 205
                  456789999*********9986 PP

  == domain 2  score: 159.2 bits;  conditional E-value: 3e-50
  YscJ_FliF_C   1 LepvvGpgnvrvqvsadldfsqeeqteetydp....nsqvvrseqtseesssgee...gvpGalsnqp.............................. 61 
                  L+p++G+gnv++qv+a+++f+++eqt+e+y+p    ++ ++rs+qts+++++g++   gvpGalsnqp                              
   EHU00533.1 256 LNPILGQGNVHAQVTAQINFDTSEQTDEKYQPngdpKNASIRSQQTSTSEQTGSPypgGVPGALSNQPapantapintannnaangqnangqnneang 353
                  89****************************7733325555******998888855578************************************9865 PP

  YscJ_FliF_C  62 aeteaaeagsnsssskseettnYevdktvshtkkapgsikrlsVaVvvd...g..keakplsaeelaqieklvkeAvGfdaergDsvsVvnipF 150
                  ++t++a+++s  ++s++++t+nYe+d+t++htk ++g+++rlsVaVvv+       +a +l++++l+qie+l +eA+G++++rgD+v+Vvn++F
   EHU00533.1 354 QRTSTASTSSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNyreDdkGKAIALNEQQLKQIENLTREAMGYSQTRGDTVNVVNSQF 447
                  444455555555*************************************8761568999**********************************9 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.13
  YscJ_FliF_C  65 eaaeagsnsssskseettnYevdktvshtkkapgsikrlsVaVv 108
                  +aa+++++++  +++++  Y v  ++ + +++  s +r+s+ V+
   EHU00533.1 502 QAAAEAQAARAAQQNDQEAYSVQLSKDELEQERKSNNRMSAEVM 545
                  33444444466666666667776666666666666666666665 PP

>> DUF3272  Protein of unknown function (DUF3272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   6.9e-07    0.0021      18      50 ..     465     497 ..     461     501 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.9e-07
     DUF3272  18 FfNeslltGdylfAlfwalllfRdlrrayavtk 50 
                 FfN+++  G++l+ ++ a++l+R + r +++ k
  EHU00533.1 465 FFNQLINAGKWLLVALVAFILYRKMVRPHVLRK 497
                 *************************99999876 PP

>> CbtA  Probable cobalt transporter subunit (CbtA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.2   3.6e+03     178     192 ..      33      47 ..      21      55 .. 0.55
   2 ?   14.4   0.3   8.2e-06     0.025      13      56 ..     476     527 ..     470     549 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
        CbtA 178 laaavaflvlvaval 192
                 +aaa+a++v+  ++l
  EHU00533.1  33 VAAAAAIAVVFSLVL 47 
                 344444444444443 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.2e-06
        CbtA  13 llAGllaflvqrlvvePlilaAeayEeaaaaaeaaeaaaeHeh........a 56 
                 ll +l+af++ r +v P++l+  a E+aaa+a+aa aa++ ++        +
  EHU00533.1 476 LLVALVAFILYRKMVRPHVLRKKAAEQAAAEAQAARAAQQNDQeaysvqlsK 527
                 7899*****************************9999985554333333331 PP

>> Ectoine_synth  Ectoine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.4e-05      0.16      22      73 ..     218     270 ..     212     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.4e-05
                    EEEEEE-GGGSSSSEEEEEEE-TT--EEEE-TT-EEEEEE.EE--EEEEETTT CS
  Ectoine_synth  22 eskRlllkddgmGfslhettikagtetelkYknHleavyc.ieGegeveeled 73 
                    +s  ll ++d +G  l++ ++k  +e+e +Y++ +ea+   i G+g+v+ + +
     EHU00533.1 218 QSGHLLTRSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNpILGQGNVHAQVT 270
                    68889********************************9854999999987655 PP

>> DUF1206  Domain of Unknown Function (DUF1206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0012       3.5      19      65 ..       4      49 ..       2      51 .. 0.72
   2 ?    1.3   0.0      0.12   3.6e+02      43      56 ..     471     484 ..     452     486 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
     DUF1206 19 qaalggggssasgsdgalatlleqpfGrvllglvglgllgyglwqlv 65
                +aa +++++   g ++ la+l + p  + ++++++++ +++ l  ++
  EHU00533.1  4 SAAATQNEETK-GFGDLLARLRANPRIPLIVAAAAAIAVVFSLVLWA 49
                56666666655.*************7777777777777777666554 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.12
     DUF1206  43 pfGrvllglvglgl 56 
                  +G++ll+++ + +
  EHU00533.1 471 NAGKWLLVALVAFI 484
                 47*****9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1645  (0.0917508); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3809.30
//
Query:       EHU00534.1  [L=330]
Description: flagellar motor switching and energizing component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-38  129.5  17.3    5.8e-36  123.0   4.9    3.6  4  FliG_C    FliG C-terminal domain
    5.4e-36  123.3  16.4    6.2e-32  110.2   3.0    3.5  3  FliG_N    FliG N-terminal domain
    1.1e-28   99.3   9.1    5.1e-24   84.3   0.1    3.9  3  FliG_M    FliG middle domain
      3e-06   27.8  19.8        0.2   12.3   2.4    4.8  4  MgtE_N    MgtE intracellular N domain
  ------ inclusion threshold ------
      0.057   13.6   2.2       0.15   12.3   0.3    2.2  2  DUF3654   Protein of unknown function (DUF3654)
       0.35   11.9   2.3          3    8.9   0.3    3.0  2  DUF1018   Protein of unknown function (DUF1018)


Domain annotation for each model (and alignments):
>> FliG_C  FliG C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   1.1   0.00065       1.9      44      93 ..       9      58 ..       4      68 .. 0.87
   2 ?    1.5   0.0      0.11   3.3e+02      31      76 ..      50      97 ..      49     105 .. 0.73
   3 ?    4.7   0.1     0.011        34      15      87 ..     100     172 ..      86     181 .. 0.87
   4 !  123.0   4.9   1.9e-39   5.8e-36       3     108 .]     217     322 ..     215     322 .. 0.97

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00065
                HHHHHCTS-HHHHHHHHTTS-HHHHHHHHHHHHHC-S--HHHHHHHHHHH CS
      FliG_C 44 LalaLkgaseelrekilsnmSkraaemlreelealgpvrlsdveeaqkei 93
                 a+++    ee  + +++ + +r+ + l   ++++ +v+ ++  e  +e+
  EHU00534.1  9 SAILMMTIGEERAAEVFKHLNQREVQHLSAAMASMRQVSHKQLTEVLREF 58
                5778888899999****************************999887765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                HHHHHHTTS-..HHHHHHHHCTS-HHHHHHHHTTS-HHHHHHHHHHHH CS
      FliG_C 31 aiqrllrevd..kedLalaLkgaseelrekilsnmSkraaemlreele 76
                ++ ++lre++  +e+ a +  ++++ lr  + +++ +++a +l e++ 
  EHU00534.1 50 QLTEVLREFEgdAEQFAALSLNSNDYLRSVLTRALGEERASSLLEDIL 97
                577889988753444555555677888999999**9999999988875 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.011
                 HHHHS-GGGGGGS-HHHHHHHHTTS-HHHHHHHHCTS-HHHHHHHHTTS-HHHHHHHHHHHHHC-S--HHHHH CS
      FliG_C  15 rkkmftfedlvrlddraiqrllrevdkedLalaLkgaseelrekilsnmSkraaemlreelealgpvrlsdve 87 
                 r+    +e l  ++++a   l+r+ +++ +a+ L   ++   + il+   +r +  +   ++++g v+++   
  EHU00534.1 100 RDTTSGMETLNFMEPQAAADLIRDEHPQIIATILVHLKRGQAADILALFDERLRHDVMLRIATFGGVQPAALA 172
                 666777899999****************************************999999999999999887665 PP

  == domain 4  score: 123.0 bits;  conditional E-value: 1.9e-39
                 HHHH-HHHHHHHHHHHS-GGGGGGS-HHHHHHHHTTS-HHHHHHHHCTS-HHHHHHHHTTS-HHHHHHHHHHHHHC-S--HHHHHHHHHHHHHHHHHHH CS
      FliG_C   3 LeeedpelaeeirkkmftfedlvrlddraiqrllrevdkedLalaLkgaseelrekilsnmSkraaemlreelealgpvrlsdveeaqkeivaiirrle 101
                 +++ d ela++i ++mf fe+lv++ddr+iqrll+ev++e+L++aLkga++ lrek+l+nmS raa++lr++l+++gpvr+s ve+ qk+i+ ++rrl+
  EHU00534.1 217 VRDFDGELAQKIIDEMFLFENLVEVDDRSIQRLLQEVESEQLLIALKGAEQPLREKFLKNMSARAADILRDDLANRGPVRMSAVENEQKAILLVVRRLA 315
                 667799********************************************************************************************* PP

                 CTTSS-B CS
      FliG_C 102 eeGeIel 108
                 e+Ge+++
  EHU00534.1 316 ESGEMVI 322
                 ****986 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   3.0   2.1e-35   6.2e-32       2     101 ..       3     102 ..       2     104 .. 0.97
   2 !   18.8   0.4   6.1e-07    0.0018       5      88 ..     126     210 ..     124     219 .. 0.77
   3 ?    3.5   2.2     0.034     1e+02       2      60 ..     192     256 ..     191     297 .. 0.61

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 2.1e-35
                 XXHHHHHHHHHHHCXHHHHHHHHTTSXHHHHHHHHHHHHCHTTXXHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHSHHHHHHHCHHHHXXXX CS
      FliG_N   2 LsgvqkaAilllaLgeeeaaevlkhLdeeeiekltkeiaslksvskeeveaVleefleeleaqeylseggeeyarelLekalgeekaeellerltaeaq 100
                 L+g++k+Ail++++gee+aaev+khL+++e+++l++++as+++vs++++ +Vl+ef  ++e+ ++ls ++++y r++L++algee+a++lle++ ++++
  EHU00534.1   3 LTGTEKSAILMMTIGEERAAEVFKHLNQREVQHLSAAMASMRQVSHKQLTEVLREFEGDAEQFAALSLNSNDYLRSVLTRALGEERASSLLEDILETRD 101
                 9*********************************************************************************************98876 PP

                 X CS
      FliG_N 101 e 101
                 +
  EHU00534.1 102 T 102
                 5 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHHCXHHHHHHHHTTSXHHHHHHHHHHHHCHTTXXHHHHHHHHHHHHHHHHCC..CCHHCHHHHHHHHHHHHHHSHHHH CS
      FliG_N   5 vqkaAilllaLgeeeaaevlkhLdeeeiekltkeiaslksvskeeveaVleefleeleaq..eylseggeeyarelLekalgeeka 88 
                 +q +A +l+ L + +aa +l+ +de+   +++ +ia+++ v+++ ++++ e  ++ l  +  + +  gg  +a e+++  + +++ 
  EHU00534.1 126 PQIIATILVHLKRGQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNSLLDGTnlKRAKMGGVRTAAEIINL-MKTQQE 210
                 6789****************************************77776666666664433367777888888887754.444444 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.034
                 XXHHHHHHHHHHHCXHHHHHHHHTT...SXHHHHHHHHHHH...HCHTTXXHHHHHHHHHHHHHH CS
      FliG_N   2 LsgvqkaAilllaLgeeeaaevlkh...Ldeeeiekltkei...aslksvskeeveaVleeflee 60 
                 + gv+ aA ++ ++  ++   v++    +d e  +k++ e+    +l +v+   ++++l+e  +e
  EHU00534.1 192 MGGVRTAAEIINLMKTQQEEAVIEAvrdFDGELAQKIIDEMflfENLVEVDDRSIQRLLQEVESE 256
                 56777777777777655555554432228999999******666677777777788777777654 PP

>> FliG_M  FliG middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   2.9e-06    0.0085      17      66 ..      10      59 ..       7      67 .. 0.89
   2 !   84.3   0.1   1.7e-27   5.1e-24       2      72 ..     115     185 ..     114     189 .. 0.94
   3 ?    2.1   0.4     0.079   2.3e+02      27      51 ..     197     221 ..     194     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
                HHHHHTS-HHHHHHHHHTS-HHHHHHHHHHHHTCCTCSHHHHHHHHHHHH CS
      FliG_M 17 AliLsyLdpeqAAevLseLpeelraevirriatlekvspevlkeveevLe 66
                A+ +  +  e+AAev+++L +++ + +   +a++++vs + l ev +  e
  EHU00534.1 10 AILMMTIGEERAAEVFKHLNQREVQHLSAAMASMRQVSHKQLTEVLREFE 59
                788889999******************************99999977665 PP

  == domain 2  score: 84.3 bits;  conditional E-value: 1.7e-27
                 HHHHHHHTTS-HHHHHHHHHTS-HHHHHHHHHTS-HHHHHHHHHHHHTCCTCSHHHHHHHHHHHHHHCHHH CS
      FliG_M   2 kqlanllknEhPqtiAliLsyLdpeqAAevLseLpeelraevirriatlekvspevlkeveevLekklssv 72 
                 ++ a+l+++EhPq+iA+iL +L++ qAA++L+ ++e+lr +v++riat++ v+p++l e+ evL++ l+++
  EHU00534.1 115 QAAADLIRDEHPQIIATILVHLKRGQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNSLLDGT 185
                 66799************************************************************999876 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.079
                 HHHHHHHTS-HHHHHHHHHHHHTCC CS
      FliG_M  27 qAAevLseLpeelraevirriatle 51 
                  AAe+++ ++ ++ + vi  +  ++
  EHU00534.1 197 TAAEIINLMKTQQEEAVIEAVRDFD 221
                 5888888888888777777665554 PP

>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00087       2.6      19      60 ..      10      57 ..       2      63 .. 0.70
   2 !   12.3   2.4   6.7e-05       0.2      22      80 ..      97     155 ..      49     162 .. 0.62
   3 !    6.5   0.4    0.0043        13       4      61 ..     172     232 ..     167     236 .. 0.65
   4 !   10.2   5.9   0.00029      0.86       3      94 ..     198     286 ..     196     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00087
                HHHHHHS-HHHHHHHHCTS-CCCCCHHHHCS......-HHHHHHHHCC CS
      MgtE_N 19 aallrllpkeeaaevleeldedlqeelieal......sdeelaellee 60
                a l   + +e+aaev+++l++++ + l +a+      s+++l+e+l e
  EHU00534.1 10 AILMMTIGEERAAEVFKHLNQREVQHLSAAMasmrqvSHKQLTEVLRE 57
                455566789999999999999998888888755555566666666666 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.7e-05
                 HHHS-HHHHHHHHCTS-CCCCCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHHH CS
      MgtE_N  22 lrllpkeeaaevleeldedlqeeliealsdeelaelleeldsDdaadlleelpeekvee 80 
                 l+  ++    e+l+ ++++ +++li++  ++ +a +l +l   +aad+l   +e+ ++ 
  EHU00534.1  97 LETRDTTSGMETLNFMEPQAAADLIRDEHPQIIATILVHLKRGQAADILALFDERLRHD 155
                 33334444455556666666666666666666666666666666666666666555555 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0043
                 HHHHHCHCCS-HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHHHHCS...-HHHHHHHHCCS CS
      MgtE_N   4 adiaelleelpeeeraallrllpkeeaaevleeldedlqeelieal...sdeelaelleel 61 
                 a++ e+l++l +   ++  +     +aae+++ +++++ e +iea+   + e ++++++e+
  EHU00534.1 172 AELTEVLNSLLDGTNLKRAKMGGVRTAAEIINLMKTQQEEAVIEAVrdfDGELAQKIIDEM 232
                 4555666666666666666666777888888888877777777776332445566666666 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00029
                 HHHHHHCHCCS-HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHHHHHHCS-HHHHHHHH CS
      MgtE_N   3 padiaelleelpeeeraallrllpkeeaaevleeldedlqeeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeereeie 94 
                 +a+i +l+++ +ee  ++ +r  + e a ++++e+      e + +++d+ +++ll+e +s+++   l+  +++ +e++l+++++  ++ ++
  EHU00534.1 198 AAEIINLMKTQQEEAVIEAVRDFDGELAQKIIDEMFL--F-ENLVEVDDRSIQRLLQEVESEQLLIALKGAEQPLREKFLKNMSARAADILR 286
                 5777888888888888888888888888888888853..3.445568************************************999887665 PP

>> DUF3654  Protein of unknown function (DUF3654)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.22   6.5e+02      60     110 ..       7      61 ..       3      66 .. 0.67
   2 ?   12.3   0.3   4.9e-05      0.15      91     138 .]     204     253 ..     173     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
     DUF3654  60 drksfllelyaeglmlkalkakldeeeveepll.....avvdhelLidahkeykid 110
                 ++ ++l+++  e+ +  + k+  ++ ev++  +       v+h+ L +  +e+++d
  EHU00534.1   7 EKSAILMMTIGEERAAEVFKHLNQR-EVQHLSAamasmRQVSHKQLTEVLREFEGD 61 
                 5667788888777777666655433.444433334455889999999999999887 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.9e-05
     DUF3654  91 llavvdhelLidahkeykidvvkELvkqvll..egkeIddesinkvveev 138
                 l+++ ++e +i+a +++ +++++ ++  ++l  +  e+dd+si++  +ev
  EHU00534.1 204 LMKTQQEEAVIEAVRDFDGELAQKIIDEMFLfeNLVEVDDRSIQRLLQEV 253
                 446677899**********************98889********988775 PP

>> DUF1018  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.3     0.001         3      27     110 ..      21     121 ..       4     123 .. 0.76
   2 ?    1.4   0.1       0.2   6.1e+02      57     114 ..     207     254 ..     166     263 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.001
     DUF1018  27 lakvlaeLkalgfkpkskkkakrkkparkatsaqlrkiealWielakagvvrdrseaaLnafvkrqt....................gvdrlewlddeq 105
                 +a+v ++L+++  +  s++ a+ ++    ++++ ++ ++    + +++ ++  +s+++L++ + r +                    g++ l+++++++
  EHU00534.1  21 AAEVFKHLNQREVQHLSAAMASMRQ---VSHKQLTEVLREFEGDAEQFAALSLNSNDYLRSVLTRALgeerassllediletrdttsGMETLNFMEPQA 116
                 6788999999988888888887765...67777788888888888999999999999999999999977777777777777777777777777777777 PP

     DUF1018 106 askvi 110
                 a+ +i
  EHU00534.1 117 AADLI 121
                 77766 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
     DUF1018  57 tsaqlrkiealWielakagvvrdrseaaLnafvkrqtgvdrlewlddeqaskvieaLk 114
                 t++  + iea          vrd + + +++++  ++  ++l  +dd+  +++++ ++
  EHU00534.1 207 TQQEEAVIEA----------VRDFDGELAQKIIDEMFLFENLVEVDDRSIQRLLQEVE 254
                 3333333333..........33444566777777777777777777776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2243.05
//
Query:       EHU00535.1  [L=231]
Description: flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-39  134.6   0.1    1.9e-39  134.6   0.1    1.7  2  FliH             Flagellar assembly protein FliH
  ------ inclusion threshold ------
      0.026   14.2  10.1      0.063   13.0  10.1    1.7  1  Yae1_N           Essential protein Yae1, N terminal
       0.11   11.9   4.7       0.14   11.5   4.7    1.1  1  DUF4407          Domain of unknown function (DUF4407)
       0.22   11.9  10.7       0.33   11.3  10.7    1.3  1  OmpH             Outer membrane protein (OmpH-like)
          2    8.1   6.2       0.13   11.9   0.5    1.9  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal


Domain annotation for each model (and alignments):
>> FliH  Flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4       1.1   3.8e+03       2      17 ..      42      57 ..      35      61 .. 0.67
   2 !  134.6   0.1   5.4e-43   1.9e-39       4     128 .]      98     222 ..      95     222 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                ...HHHHHHHHHHHHH CS
        FliH  2 eeqarlaalleelens 17
                e+q++++++ ++l+++
  EHU00535.1 42 EQQQQFEQMQQQLRKE 57
                5666666666666654 PP

  == domain 2  score: 134.6 bits;  conditional E-value: 5.4e-43
                 .HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S-HHHHHHHHHHHHTTSCHHHS-EEEEE-HHHHHHHHHHHHHHHHHCT-EEEE-TT CS
        FliH   4 qarlaalleelenslaeldeeledqlvqlaldiarkvikkelsvdpekilalvrealaklpvdekkitlrvnpdDlelvrehlgeelsargwrlvaDss 102
                 qar+++l++e++n+l++ld+ ++ +l+qlal++ar vi+++++vd +++l +++ +l+++p+ ++k++lrv+pdDl ++++ lg +l+ +gwrl+aD++
  EHU00535.1  98 QARMQQLVTEFQNTLESLDSVIAARLMQLALEAARSVIGQATTVDGSALLRQIQGLLQQEPMFSGKPQLRVHPDDLLRIEQTLGPTLDLHGWRLLADNT 196
                 89************************************************************************************************* PP

                 S-TT-EEEEESSCEEEHHHHHHHHHH CS
        FliH 103 lsrGgcrieseegeiDatietRlkkl 128
                 l++Ggc++++e+g++Da+++tR+++l
  EHU00535.1 197 LHPGGCKLSAEDGDLDASVATRWQEL 222
                 ***********************986 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  10.1   1.8e-05     0.063       1      23 [.      66      88 ..      61      94 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
      Yae1_N  1 GYreGiaeGkeqglqeGfdeGyq 23
                G+++G++eG+++g+ +Gf++G+ 
  EHU00535.1 66 GHQQGFNEGQKAGYDAGFQQGLA 88
                56666666666666666666665 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.7   3.9e-05      0.14     147     229 ..      38     122 ..      28     154 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
     DUF4407 147 aeidaaearldalraeaqkeldgtk.........gtgttgvaGkgpaake.kkaqldaaqaelaelkakldatarlaalraelaeleaerake 229
                 +e d++++++++ +++++ke++g+          +      +G+ + +++  ++ l++aq++ a l+a+   ++ +++ +++l++l++ +a++
  EHU00535.1  38 SEEDEQQQQFEQMQQQLRKEAHGQGyseghqqgfN------EGQKAGYDAgFQQGLADAQQQQAPLQAR--MQQLVTEFQNTLESLDSVIAAR 122
                 6678999***************9889886643332......3444444445444555555555555555..5555555555555554444433 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.7   9.2e-05      0.33      24     109 ..      36     122 ..      27     147 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHH..HHHHHTTTS.-HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        OmpH  24 lekkfkklqaeleakekelqklqe..elqkkakklekeekeqe.lqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikevakek 109
                 +e+++ + q+++e+++++l+k++    + +  +++  +e +++ +++  q+  +++qq++  lq++ q+l+ ++++ ++  ++ v +++
  EHU00535.1  36 FESEEDEQQQQFEQMQQQLRKEAHgqGYSEGHQQG-FNEGQKAgYDAGFQQGLADAQQQQAPLQARMQQLVTEFQNTLE-SLDSVIAAR 122
                 45556666666666666666555422343333333.2233333533333333333444445566666666666444443.344444444 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.8       1.2   4.4e+03      15      22 ..      45      52 ..      33      58 .. 0.47
   2 ?   11.9   0.5   3.6e-05      0.13      11      42 ..      92     126 ..      84     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
  Nbl1_Borealin_N 15 eRirrlra 22
                     ++ +++  
       EHU00535.1 45 QQFEQMQQ 52
                     33333333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.6e-05
  Nbl1_Borealin_N  11 lE...veeRirrlraelelllktlrnrfelellri 42 
                      ++   ++ R+++l +e +++l++l++ ++ +l+++
       EHU00535.1  92 QQqapLQARMQQLVTEFQNTLESLDSVIAARLMQL 126
                      5556689**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1524  (0.085002); expected 358.6 (0.02)
Passed bias filter:                      828  (0.0461822); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1609.33
//
Query:       EHU00536.1  [L=453]
Description: flagellum-specific ATP synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-71  237.9   0.0    1.1e-70  237.6   0.0    1.1  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    7.3e-24   83.4   0.2    1.2e-23   82.7   0.2    1.4  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
  ------ inclusion threshold ------
       0.13   12.8   0.1       0.27   11.7   0.1    1.5  1  ABC_tran       ABC transporter


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   1.8e-74   1.1e-70       1     213 []     161     372 ..     161     372 .. 0.99

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 1.8e-74
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlAE 98 
                  G+r+++al+++++Gqr+++++++gvGk+v++ ++++++ +d +i++ +iGerg+ev++++e++  ++  +r+v++a+ ++ ++++r++ +  ++ +AE
   EHU00536.1 161 GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTLAD-VIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRLQGAAYATRIAE 257
                  89***********************************8777.******************************************************** PP

                  HHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  99 yfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivLdkk 196
                   frd+gk++lli+dsl+r+a+A+rei+l++ge+pa++gyp++++akl+ l+ERag+  d  Gs+t++++v ++g+D +dp+++  ++i+dg+ivL+++
   EHU00536.1 258 DFRDRGKHILLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRR 355
                  *********************************************************99*************************************** PP

                  HHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 197 laqrkhfPainvlvSvS 213
                  la+++h+Pai++ +S+S
   EHU00536.1 356 LAEAGHYPAIDIEASIS 372
                  ***************98 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.2   2.1e-27   1.2e-23       2      71 ..     380     449 ..     379     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 2.1e-27
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLiniGaYkkGsdpelDeAiakrpainafLkQgvdekvsfeetlaqLk 71 
                    ++ h++ +r++++ll+ +q+n+dL+++GaY++Gsdp lD+Ai+++p+++afL+Qg+ e++++++++  L+
     EHU00536.1 380 DENHYARVRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDKAIQLYPQMEAFLQQGIFERSEYDDACLHLH 449
                    789*************************************************************988776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.6e-05      0.27       6      34 ..     169     197 ..     165     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
                 EEEETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagl 34 
                 l++ +g++++++  +G GKS Ll ++a+ 
  EHU00536.1 169 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 197
                 8999********************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3295.89
//
Query:       EHU00537.1  [L=147]
Description: flagellar protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-32  110.6  21.9    6.5e-32  110.3  21.9    1.1  1  FliJ           Flagellar FliJ protein
  ------ inclusion threshold ------
      0.011   15.3  10.8      0.012   15.2  10.8    1.1  1  Exonuc_VII_L   Exonuclease VII, large subunit
      0.023   15.4   0.7      0.043   14.5   0.4    1.5  1  Sulfatase_C    C-terminal region of aryl-sulfatase
      0.045   14.1   0.1      0.052   13.8   0.1    1.2  1  FANCI_S2       FANCI solenoid 2
       0.23   11.3  21.8      0.028   14.2  12.4    2.0  2  OEP            Outer membrane efflux protein
       0.24   10.9  22.7       0.65    9.5  22.7    1.6  1  MscS_porin     Mechanosensitive ion channel porin domain
       0.26   10.6   2.4       0.33   10.3   2.4    1.1  1  Bestrophin     Bestrophin, RFP-TM, chloride channel
       0.26   11.4  10.7       0.88    9.7   5.8    2.6  2  RasGAP_C       RasGAP C-terminus
       0.48   11.3  15.7       0.38   11.6   0.6    3.2  3  FliT           Flagellar protein FliT
        1.2    9.6   4.5        1.2    9.6   2.7    1.8  2  IZUMO          Izumo sperm-egg fusion, Ig domain-associated
        1.4    9.4   5.5        2.5    8.6   3.2    2.3  3  FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
        1.8    8.3  10.9          4    7.1  11.0    1.6  1  DUF745         Protein of unknown function (DUF745)
        1.9    7.3   6.0        2.1    7.1   6.0    1.0  1  LMBR1          LMBR1-like membrane protein
          3    8.0   7.4        1.7    8.8   5.1    1.7  1  Fib_alpha      Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3  21.9   5.1e-35   6.5e-32       2     122 ..      20     141 ..      19     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 5.1e-35
        FliJ   2 eaareLaeaqrelqqaeekleeleqyrqeyqkqlsgea.qglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkere 99 
                  aa  L+ ++r +q+a+e+l +l +y++ey+++l++++ +g++ +++ ny++fi++l++ai+q++++l+q+++++e+a  +w e++q+++++++L+ r+
  EHU00537.1  20 RAAVLLGDMRRGQQAANEQLSMLLDYQDEYRNKLNSDMsSGIASNRWTNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRLNAYQTLITRA 118
                 6778899*******************************77*********************************************************** PP

        FliJ 100 kkeeqkeenrrEqkqlDElalrr 122
                 +++++++enr +qk++DE+a+r+
  EHU00537.1 119 EENALRQENRLDQKRMDEFAQRA 141
                 *********************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2  10.8   9.6e-06     0.012     143     235 ..      40     132 ..      13     146 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.6e-06
  Exonuc_VII_L 143 aeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k..ekleekkerlkkl 235
                   + l++  +e++++l++ +++ +   ++r +++++ +++ e+ +e++r++l+++++rle+    ++++k++rl+ +++ + +  e+  ++++rl++ 
    EHU00537.1  40 SMLLDYQDEYRNKLNSDMSSGIA--SNRWTNYHQFIQTLEKAIEQHRSQLQQWNQRLEQ-ALVNWREKQQRLNAYQTLItRaeENALRQENRLDQK 132
                   34455557777888888888776..4578899999999999******************.6779999*******9955533443333333444322 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   3.4e-05     0.043      70     112 ..      62     105 ..      51     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-05
                  TSTT.CCHHHHHHHHHHHHHHHCCC------TCCHHCHS.-GGG CS
  Sulfatase_C  70 saes.peykevlkeikkaveehkktlkpvpnqlakgellpkpwl 112
                  +++  ++y++ +++++ka+e+h+++l++ +++l+++  ++++  
   EHU00537.1  62 ASNRwTNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQ 105
                  444569****************************9988887655 PP

>> FANCI_S2  FANCI solenoid 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.1e-05     0.052      42     108 ..      32      98 ..       6     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-05
    FANCI_S2  42 aklgsqiLlelfkvhesarseiieqllsriitkseeevsqyiklLselvksapltllesssklkell 108
                 ++ + + L+ l   +++ r+++ + + s i++++ ++ +q+i+ L + ++++  +l++  ++l++ l
  EHU00537.1  32 QQAANEQLSMLLDYQDEYRNKLNSDMSSGIASNRWTNYHQFIQTLEKAIEQHRSQLQQWNQRLEQAL 98 
                 56677778999999*********************************************99999887 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.9     0.067        85     121     162 ..       8      49 ..       2      58 .. 0.85
   2 ?   14.2  12.4   2.2e-05     0.028      83     152 ..      67     136 ..      60     144 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.067
         OEP 121 keqlelaeealklaekalelaearykaGlislldvlqaqvrl 162
                  ++++lae+ l++a  +l  +++  +a   +l+ +l++q ++
  EHU00537.1   8 YTLRDLAEQDLERAAVLLGDMRRGQQAANEQLSMLLDYQDEY 49 
                 566799*********************999996699999886 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.2e-05
         OEP  83 arvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlisl 152
                  ++ +  + le+a +q++ ++qq  + ++qa+ +++  +++l +++ ++++ae+++ + e r+++ + ++
  EHU00537.1  67 TNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRLNAYQTLITRAEENALRQENRLDQKRMDE 136
                 6778888999**********************************************99999998877665 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  22.7   0.00051      0.65      20     150 ..      16     143 ..      10     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00051
  MscS_porin  20 qdLeqalnlLdkidkskkkaeelqkaidda.PkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrper 117
                 qdLe+a  lL + ++ ++ a+e    + d+  +   +l+ + ++      ++++ +  ++ +++Le+ ++q  sqlq+++++l q+  +++e q+r++ 
  EHU00537.1  16 QDLERAAVLLGDMRRGQQAANEQLSMLLDYqDEYRNKLNSDMSSG----IASNRWTNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRLNA 110
                 778888888777666555544444444444044444566666666....77777778888899************************************ PP

  MscS_porin 118 aqqqltearqrlqeirnrLnstaaagealsqaq 150
                  q+ +t a +     +nrL++++ ++ a ++a+
  EHU00537.1 111 YQTLITRAEENALRQENRLDQKRMDEFAQRAAL 143
                 *******************99966655555555 PP

>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.4   0.00025      0.33      72     139 ..      62     135 ..      59     147 .] 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
  Bestrophin  72 vydRWweqrkllgwldkaarslarqvrglsd..eegrlarrtilrylvlllvlffralssrvrkr....fptle 139
                 + +RW +  + + +l+ka+ +   q++++++  e++    r+  + l+ +++l++ra ++++r++    +++++
  EHU00537.1  62 ASNRWTNYHQFIQTLEKAIEQHRSQLQQWNQrlEQALVNWREKQQRLNAYQTLITRAEENALRQEnrldQKRMD 135
                 679*************************9955688888889999999*****************9444433333 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.056        72      44      93 ..      10      59 ..       2      72 .. 0.81
   2 ?    9.7   5.8   0.00069      0.88      56      94 ..      70     116 ..      63     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.056
    RasGAP_C 44 lrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk 93
                lr+  +++le++   l +++  ++  ++ql+ + +y ++ +++l++  ++
  EHU00537.1 10 LRDLAEQDLERAAVLLGDMRRGQQAANEQLSMLLDYQDEYRNKLNSDMSS 59
                67778899999999999999999******************999887544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00069
    RasGAP_C  56 eetlktLseknnylesqlesYkayienvleqlkkkkgk........l 94 
                 ++ ++tL++  ++++sql+++++ +e++l +  +k+++         
  EHU00537.1  70 HQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRlnayqtliT 116
                 677899**************************999766555433221 PP

>> FliT  Flagellar protein FliT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6    0.0003      0.38      57      83 ..      10      36 ..       8      37 .. 0.94
   2 ?    6.2   4.7     0.014        18      41      85 .]      67     111 ..      36     111 .. 0.75
   3 ?    3.1   0.9      0.13   1.7e+02      10      47 ..     101     138 ..     100     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
                HHHHHHHHHHHHHHHHCHTHHHHHHHH CS
        FliT 57 irallqprldelqkllgalrrqrkann 83
                +r+l+++ l++ + llg++rr+++a+n
  EHU00537.1 10 LRDLAEQDLERAAVLLGDMRRGQQAAN 36
                89**********************987 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHH CS
        FliT  41 eekrellrrilandaeirallqprldelqkllgalrrqrkannaY 85 
                     ++++ + +  ++ r++lq++ ++l++ l + r +++  naY
  EHU00537.1  67 TNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRLNAY 111
                 5556667777777788899*********************99999 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHCS--ST--HHHHHHHHHHH CS
        FliT  10 Wdelaaleaerqqlverlreldaaplspaereekrell 47 
                 W e  + ++ +q+l+ r +e++  + +  ++++ +e+ 
  EHU00537.1 101 WREKQQRLNAYQTLITRAEENALRQENRLDQKRMDEFA 138
                 7777888999*******999995555555666655555 PP

>> IZUMO  Izumo sperm-egg fusion, Ig domain-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.3   1.7e+03      30      51 ..      16      37 ..       4      69 .. 0.55
   2 ?    9.6   2.7   0.00097       1.2      13      73 ..      73     132 ..      66     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
                HHHHHHHHHHHTTT---SGGGG CS
       IZUMO 30 klleraealledlsekelaenk 51
                + lera  ll d+   + a n+
  EHU00537.1 16 QDLERAAVLLGDMRRGQQAANE 37
                4444444455555432222222 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00097
                 HHHHHHTHHHHHSGGHHHHHHHHHHHHHTTT---SGGGGGGSEEEHHHHHHHHHHHHHHHH CS
       IZUMO  13 lksLeedllpselehreklleraealledlsekelaenkflgvvdeetlekvasslkkelk 73 
                 +++Le+++ +++ ++ ++  +r+e++l ++ ek+   n+++ ++++++ + ++++ + + k
  EHU00537.1  73 IQTLEKAI-EQHRSQLQQWNQRLEQALVNWREKQQRLNAYQTLITRAEENALRQENRLDQK 132
                 56677666.666669*****************************99887777766555555 PP

>> FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         2   2.6e+03      33      51 ..      37      55 ..      16      77 .. 0.64
   2 ?    2.2   0.2      0.19   2.4e+02      24      54 ..      65      92 ..      59      96 .. 0.59
   3 ?    8.6   3.2    0.0019       2.5      27      62 ..      86     121 ..      79     136 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
  FAA_hydro_N_2 33 ptlqaaLdnWdevepaLee 51
                   ++l  +Ld  de +++L++
     EHU00537.1 37 EQLSMLLDYQDEYRNKLNS 55
                   4566666666666666654 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.19
  FAA_hydro_N_2 24 kavdaseiaptlqaaLdnWdevepaLeelye 54
                   ++++ +++++tl +a+++ +   ++L++  +
     EHU00537.1 65 RWTNYHQFIQTLEKAIEQHR---SQLQQWNQ 92
                   45556667777777777644...34444444 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0019
  FAA_hydro_N_2  27 daseiaptlqaaLdnWdevepaLeelyeaLnagtak 62 
                    + ++  + l +aL nW+e +++L++ ++ + +++++
     EHU00537.1  86 QLQQWNQRLEQALVNWREKQQRLNAYQTLITRAEEN 121
                    56667789***************9988887766644 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.0    0.0032         4      78     173 ..      45     142 ..       9     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0032
      DUF745  78 vqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkql..kearkdlektkkaAykAa 173
                  q+e ++  +s  +  +a++  ++ +q +++l++++++ +++l++ +q  ++a  + +ek+q l+a ++ + + +++   +e r d +++ + A++Aa
  EHU00537.1  45 YQDEYRNKLNSDMSSGIASNRWTNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRLNAYQTLITRAEENAlrQENRLDQKRMDEFAQRAA 142
                 5666666678888999999999999************************************9999999999988887633567777788888888887 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.0    0.0017       2.1     218     326 ..      16     119 ..       3     144 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0017
       LMBR1 218 eaereledllkevkklrksisesdp.lrkyleeilkkvPeeiaeklksnenkteeslaklekqlikalqkrertekqwkrllekalelediiknksske 315
                 +  ++   ll ++++ ++  +e+   l +y +e  +k ++++++ ++sn+  ++ + ++    l ka+++++ + +qw++ le+a      + n  +k+
  EHU00537.1  16 QDLERAAVLLGDMRRGQQAANEQLSmLLDYQDEYRNKLNSDMSSGIASNRWTNYHQFIQT---LEKAIEQHRSQLQQWNQRLEQA------LVNWREKQ 105
                 333444467788888888888888877799999999999999999888655544444443...4677777777777777777777......33333333 PP

       LMBR1 316 kefksses...srr 326
                 ++++  +    + +
  EHU00537.1 106 QRLNAYQTlitRAE 119
                 33332222223333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.1    0.0013       1.7      31     103 ..      67     139 ..      59     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesn 103
                 +++++ +++le+ +e+++++ ++ ++  ++    +rekq+  +  +++i++ +++  ++ +rl+++  +++ +
  EHU00537.1  67 TNYHQFIQTLEKAIEQHRSQLQQWNQRLEQALVNWREKQQRLNAYQTLITRAEENALRQENRLDQKRMDEFAQ 139
                 678899***********************************99998888888776555888887776555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2442  (0.136204); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1070.56
//
Query:       EHU00538.1  [L=422]
Description: FliK family flagellar hook-length control protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-21   75.3   2.9    7.1e-21   73.9   2.9    1.8  1  Flg_hook  Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   2.9     4e-25   7.1e-21       3      83 ..     290     370 ..     288     372 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 4e-25
                 HHHHHHCCTTSEEEEEECCCCCEEEEEEEEEETTEEEEEEEE-SCHHHHHHHHTHHHHHHHHHCCTTCCEEEEEECS---- CS
    Flg_hook   3 kvakaasngsqeatlrLdppeLGkvevkltlrggqlsvqltaenpetrelLeqnlprLreaLaaaGlklddlsvsegspsq 83 
                 ++ + ++ng+q+a+lrL+p++LG ++++l+l+++q+++++++ ++++r++Le++lp+Lr+aLa++G++l++ +vs++s  q
  EHU00538.1 290 QIVMFSRNGQQNAELRLHPEDLGAIQISLKLNNDQAQLNMVSGHSHVRAALEAALPQLRTALAENGINLGESQVSSDSFAQ 370
                 6778899********************************************************************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3359.45
//
Query:       EHU00539.1  [L=161]
Description: flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-22   80.4   0.0    1.6e-22   80.0   0.0    1.2  1  FliL             Flagellar basal body-associated protein FliL
  ------ inclusion threshold ------
       0.12   12.5   1.0       0.12   12.5   1.0    1.7  2  Myco_arth_vir_N  Mycoplasma virulence signal region (Myco_art


Domain annotation for each model (and alignments):
>> FliL  Flagellar basal body-associated protein FliL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.8e-26   1.6e-22       1     101 [.      59     159 ..      59     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.8e-26
        FliL   1 yvpleepfvvnlkdadgggerylkveitlevadaeleek..ekepeirdailsllssktaeelstpegkekLkeelleelnkvl.eegklekgpvedVl 96 
                 +++l+  f+vnl ++d++ +r+l v++tl+++d+e++ +  +++pe+r+++l lls+++a+ l+t++gk++L e+++++l  +l +   + ++ v+dVl
  EHU00539.1  59 FFALDT-FTVNLVNPDNDPDRVLYVGFTLRLPDEETRRRmsDYLPEVRSRLLLLLSRQSAAALATEQGKQALVEQIKQALAPPLvKG--QPPQVVDDVL 154
                 689955.************************999999999999*****************************************555..479******* PP

        FliL  97 Ftsfv 101
                 Ft f+
  EHU00539.1 155 FTAFI 159
                 ****9 PP

>> Myco_arth_vir_N  Mycoplasma virulence signal region (Myco_arth_vir_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   1.3e-05      0.12       3      28 ..       6      31 ..       4      33 .. 0.77
   2 ?   -3.5   0.9       1.3   1.2e+04      17      22 ..     117     122 ..     116     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
  Myco_arth_vir_N  3 flKKKKikIltla.lvaaLlaaltfgG 28
                     ++K  K kIl+ + l+++L+a+ ++ G
       EHU00539.1  6 KAKGRKRKILIPVlLIVTLAAC-SVAG 31
                     689999***9987358999998.5555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.3
  Myco_arth_vir_N  17 vaaLla 22 
                      +aaL++
       EHU00539.1 117 AAALAT 122
                      799997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1308.10
//
Query:       EHU00540.1  [L=335]
Description: flagellar motor switching and energizing component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-78  263.1   0.0    2.4e-78  262.5   0.0    1.3  1  FliM      Flagellar motor switch protein FliM
      6e-16   58.2   0.0    1.1e-15   57.4   0.0    1.5  1  FliMN_C   Type III flagellar switch regulator (C-ring) FliN C


Domain annotation for each model (and alignments):
>> FliM  Flagellar motor switch protein FliM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.0   2.6e-82   2.4e-78       1     192 []      38     231 ..      38     231 .. 0.99

  Alignments for each domain:
  == domain 1  score: 262.5 bits;  conditional E-value: 2.6e-82
                 XXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHTS-EEEEEEEEEEEEHHHHHTTSBSS-EEEEEEETTTEEEEEEEE-HHHHHHHHHHHTTS-S- CS
        FliM   1 ydfkrqdrvskerlrtleliherlaRllttslsallrkivevsvasvdqlkyeeflrslpvptslnvirlkplkgtallevdpslvfsivdrllGGdgr 99 
                 yd+++q+rv++erl++le+i+er+aR++++ l++llr+++++sv ++++++y+ef+r+lpvpt+ln+i+lkpl+gtal++++pslvf++vd+l+GGdgr
  EHU00540.1  38 YDPNTQRRVVRERLQALEIINERFARHFRMALFNLLRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGR 136
                 9************************************************************************************************** PP

                 --S..TT----HHHHHHHHHHHHHHHHHHHHHHTTT---EEEEEEEESSTTSEESS-.TTSEEEEEEEEEEETTEEEEEEEEEEHHHHHHHHTTH CS
        FliM 100 aaak.egrefteiErkvierllkvvledlkeawspvvdlepeldelEvnpqfaqivs.pneivvlvsleieigeseGelnlclPyitiEpirekl 192
                 + +k egreft++E++vi r+lk +l+ +++aw+++ +l +e++++E++++f++i++ pn+ivv++ +++eig+  Ge+n+c+P+++iEp+re+l
  EHU00540.1 137 FPTKvEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSEMQVKFTNITTsPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLREML 231
                 *******************************************************988***********************************98 PP

>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.2e-19   1.1e-15       2      72 ..     253     321 ..     252     322 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.2e-19
                 .XXXXXEEEEEEEEEEEEEHHHHHHHHTTSEEE--TTGGGCEEEEETTEEEEEEEEEEETTEEEEEEEEE- CS
     FliMN_C   2 elsdvpveleaelgrtrltlrellnLkvGdvipLdkpadepvevyvngkpiarGelgvvggrlavriteii 72 
                 +++++++el a +++t+l l+ +l+Lk+Gdv+p++kp  e +   v+g+p+ + ++g+++g++a+r++++i
  EHU00540.1 253 QVQHSELELIAHFAETSLRLSRVLQLKPGDVLPIEKP--ERIIAHVDGVPVLTSQYGTLNGQYALRVEHLI 321
                 899**********************************..*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2669.23
//
Query:       EHU00541.1  [L=137]
Description: flagellar motor switching and energizing component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-27   94.3   1.6    4.3e-27   93.9   1.6    1.2  1  FliMN_C   Type III flagellar switch regulator (C-ring) FliN C
    1.2e-20   73.0   6.1    1.8e-20   72.5   6.1    1.3  1  FliN_N    Flagellar motor switch protein FliN N-terminal
  ------ inclusion threshold ------
      0.013   14.3   0.0      0.016   13.9   0.0    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   1.6   7.2e-31   4.3e-27       2      72 ..      56     126 ..      55     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 7.2e-31
                 .XXXXXEEEEEEEEEEEEEHHHHHHHHTTSEEE--TTGGGCEEEEETTEEEEEEEEEEETTEEEEEEEEE- CS
     FliMN_C   2 elsdvpveleaelgrtrltlrellnLkvGdvipLdkpadepvevyvngkpiarGelgvvggrlavriteii 72 
                  ++d+pv+l++elgrt++t++ell+L +G+v+ Ld  a+ep+++++ng +ia+Ge++vv+++++vrit+ii
  EHU00541.1  56 LIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVNDKYGVRITDII 126
                 69*******************************************************************98 PP

>> FliN_N  Flagellar motor switch protein FliN N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   6.1     3e-24   1.8e-20       1      50 []       1      49 [.       1      49 [. 0.98

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 3e-24
      FliN_N  1 MSDakkPsdddkesaDDLWAeAlneQaateksaastegvFksLegqdalG 50
                M+D+kkPs dd++saDDLWAeA+neQ ++  s++++++vFks+e+++++G
  EHU00541.1  1 MTDSKKPS-DDTISADDLWAEAMNEQVGSGASTSQSDDVFKSFESSNTSG 49
                ********.**************************************998 PP

>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.7e-06     0.016     324     366 ..      71     115 ..      55     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHHSCSSTTEEEEESSS..CEEETTEEE-TT-EEEEE CS
        p450 324 ldavikEtLRlhpvvplllpRevtk..dvvirgylipkGtevivn 366
                 ++++ikE LRl + ++++l   + +  d+ i+gyli +G +v+vn
  EHU00541.1  71 TKMTIKELLRLTQGSVVSLDGLAGEplDILINGYLIAQGEVVVVN 115
                 89*****************99999999***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 967.06
//
Query:       EHU00542.1  [L=132]
Description: FliO family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-19   68.0   0.2    9.1e-19   67.6   0.2    1.2  1  FliO      Flagellar biosynthesis protein, FliO
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.016   15.5   0.0    1.3  1  MLANA     Protein melan-A


Domain annotation for each model (and alignments):
>> FliO  Flagellar biosynthesis protein, FliO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.2     1e-22   9.1e-19       1      88 [.      43     125 ..      43     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1e-22
        FliO   1 wllrRagggssgrsrrggrrlkvvaslalgpkervvlVevgeellllGvtpgsislLheltkaeapeppsaeeapapaeFaqlLarll 88 
                 wl+rR +  + ++++ g+r+l   as+++g++ervv+V+  +  l+lGvt+++i++Lh+l  ++   + +++e++ap++F+qlL++l+
  EHU00542.1  43 WLARR-M--GFAPKKVGSRELTLTASVQVGQRERVVIVDTPDARLVLGVTAQQITHLHTL--PPGSPDVDTAEKAAPQDFRQLLQNLV 125
                 9****.3..34556789*******************************************..33333333334444555******986 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.8e-06     0.016      32      89 ..      30      89 ..       2     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-06
       MLANA 32 vvvLaillllgCwyykrrsGY..kslrskslkvstlktlvgegeleelakadsklalqef 89
                v+v+ ill+l+C ++ rr G+  k++ s++l+ ++  ++ +++++  +++ d++l+l   
  EHU00542.1 30 VLVVIILLILACAWLARRMGFapKKVGSRELTLTASVQVGQRERVVIVDTPDARLVLGVT 89
                566779**************9667888888888777777777777777778888776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1034.67
//
Query:       EHU00543.1  [L=244]
Description: flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-77  258.9  12.5    3.6e-77  258.6  12.5    1.1  1  FliP      FliP family


Domain annotation for each model (and alignments):
>> FliP  FliP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6  12.5     2e-81   3.6e-77       2     191 .]      47     238 ..      46     238 .. 0.97

  Alignments for each domain:
  == domain 1  score: 258.6 bits;  conditional E-value: 2e-81
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        FliP   2 ltvlslapallimvtsftrivivlsllrnalglqqvppnqvliglallltlfvmaPvleeineeavkplleeeiteeealekakeplrefllkqtrekd 100
                 +t l+++pa+l+m+tsftri+iv+ llrnalg+ ++ppnqvl+gl+l+lt+f+maP++++i+++a+ p+++++i+++ a++k+++plref+l+qtre d
  EHU00543.1  47 ITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFMLRQTREAD 145
                 7899*********************************************************************************************** PP

                 HHHHHHCTT-..-SSGGGS-HHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        FliP 101 lalflelaek..eeeeeevplsvlipafviselkkafeigfllylpFlviDlvvasvlmslGmmmlsPvvislPfKlllfvlvdgwtllvksL 191
                 lalf++la++      e+vp+++l+pa+v+selk+af+igf++++pFl+iDlvvasvlm+lGmmm++P++i+lPfKl+lfvlvdgw+llv+sL
  EHU00543.1 146 LALFARLANTppIVGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 238
                 *********955455677************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1782.93
//
Query:       EHU00544.1  [L=89]
Description: flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-29  102.0   6.2    1.4e-29  101.8   6.2    1.0  1  Bac_export_3  Bacterial export proteins, family 3
     0.0083   15.7   5.6       0.01   15.4   5.6    1.0  1  Bac_export_1  Bacterial export proteins, family 1
  ------ inclusion threshold ------
       0.01   15.6   1.8      0.011   15.4   1.8    1.0  1  BacA          Bacitracin resistance protein BacA
       0.15   12.2   0.4       0.15   12.2   0.4    2.0  2  DUF4235       Protein of unknown function (DUF4235)
        2.7    8.0   8.3        1.3    9.0   0.2    2.9  3  TM_helix      Conserved TM helix


Domain annotation for each model (and alignments):
>> Bac_export_3  Bacterial export proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   6.2   3.9e-33   1.4e-29       2      73 ..       6      77 ..       5      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 3.9e-33
  Bac_export_3  2 vidlarealllvlllsaplllvalvvGlvvsifQaaTqIqEqTLsfvpKllavllvllllgpwmletlvdft 73
                  v+ +++e++ ++lll+ap+ll+alv Gl+vs++QaaTqI+EqTLsf+pK++av+++ +++gpwml+ l+d++
    EHU00544.1  6 VMVMGQESMRVALLLAAPMLLAALVSGLLVSLLQAATQINEQTLSFIPKIIAVAATGVVAGPWMLNVLLDYI 77
                  78899******************************************************************7 PP

>> Bac_export_1  Bacterial export proteins, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   5.6   2.8e-06      0.01     155     228 ..       6      78 ..       2      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-06
  Bac_export_1 155 lvellsdlfvlalqlalPvvaalllvnlalGllsRaaPqlnvfvvgfplkilvgllllllllplllevferlfe 228
                   ++ ++++++ +al+la+P+++a l+  l + ll  aa q+n   ++f  ki++  ++ +++ p +l+v+ ++++
    EHU00544.1   6 VMVMGQESMRVALLLAAPMLLAALVSGLLVSLLQ-AATQINEQTLSFIPKIIAVAATGVVAGPWMLNVLLDYIR 78 
                   566999************************9995.99****************999999999999998888775 PP

>> BacA  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.8   3.2e-06     0.011     180     240 ..      11      79 ..       5      88 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-06
        BacA 180 eaaaefSFllaiPailgagllk....llksaealtaselll...lv.gfvvafvvallaikfllkllkk 240
                 +++++ ++lla P++l+a +      ll++a+++++++l++   ++  +++ +v++  ++++ll+++++
  EHU00544.1  11 QESMRVALLLAAPMLLAALVSGllvsLLQAATQINEQTLSFipkIIaVAATGVVAGPWMLNVLLDYIRT 79 
                 6899************99974432336666677777766655664424445556667778888888765 PP

>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   4.1e-05      0.15      46      65 ..      24      43 ..      11      50 .. 0.88
   2 ?    0.1   0.3      0.25   8.9e+02       8      17 ..      57      66 ..      52      69 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
     DUF4235 46 vllfAaisGavlavvrvaad 65
                +ll+A++sG++++++++a++
  EHU00544.1 24 MLLAALVSGLLVSLLQAATQ 43
                9****************997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.25
     DUF4235  8 lglvaGavag 17
                + +++G+vag
  EHU00544.1 57 AVAATGVVAG 66
                3444444443 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.5     0.022        78      23      44 ..      19      40 ..      16      46 .. 0.70
   2 ?    9.0   0.2   0.00037       1.3       8      26 ..      46      64 ..      39      66 .. 0.81
   3 ?   -0.3   0.1       0.3   1.1e+03       6      15 ..      69      78 ..      69      89 .] 0.58

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHH CS
    TM_helix 23 ILlvGwiiAkfvsrlvtkllak 44
                +L+  +++A +vs l+  ll++
  EHU00544.1 19 LLAAPMLLAALVSGLLVSLLQA 40
                4555567788888888777776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00037
                HHHHTTHSHHHHHHHHHHH CS
    TM_helix  8 nellsflPnLvgAilILlv 26
                ++ lsf+P++++ ++  +v
  EHU00544.1 46 EQTLSFIPKIIAVAATGVV 64
                688*********9887776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.3
                XXHHHHTTHS CS
    TM_helix  6 llnellsflP 15
                +ln ll ++ 
  EHU00544.1 69 MLNVLLDYIR 78
                5666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 661.57
//
Query:       EHU00545.1  [L=261]
Description: flagellar export pore protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-68  230.4  33.9    2.3e-68  230.2  33.9    1.0  1  Bac_export_1  Bacterial export proteins, family 1


Domain annotation for each model (and alignments):
>> Bac_export_1  Bacterial export proteins, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.2  33.9   1.3e-72   2.3e-68       2     229 ..      14     246 ..      13     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 230.2 bits;  conditional E-value: 1.3e-72
  Bac_export_1   2 lafllvfaRilallllaPvfgsrsiparvrlglalalalllaaaalpalpsvesll....llllkEvliGlllGfllrlvfaalqlaGeiidlqmGl 94 
                   ++f+++++Rilal+++aPv+++r+i++rv++gla+++++ll+ + l ++ +v+ ++    +ll++++liG+++Gf++++ faa+++aGe+i+lqmGl
    EHU00545.1  14 SQFFWPMVRILALIATAPVLSERAISKRVKIGLAAMITWLLV-PLL-PPVNVTLFSpagfMLLIQQMLIGIAIGFTMQFAFAAVRAAGELIGLQMGL 108
                   68***************************************2.222.2334555556677************************************* PP

  Bac_export_1  95 smasvfdpasgaqssvlgqflnllalllflaldghllliealveSfelipvg...legk..laellvellsdlfvlalqlalPvvaalllvnlalGl 186
                   s+a++fdpas  +++vl++fl +la+llfl+++ghl+li++l++Sf+++pvg   l  +  +++ l++ ++ +f+ +++lalP++++ll +n++lGl
    EHU00545.1 109 SFATFFDPASRLNMPVLARFLDMLAMLLFLSFNGHLWLISLLADSFHTLPVGgtpL--EanAFMALAKSGGMIFLNGMMLALPLIVLLLTLNMVLGL 203
                   ***************************************************97542..2348999******************************** PP

  Bac_export_1 187 lsRaaPqlnvfvvgfplkilvgllllllllplllevferlfee 229
                   l+R++Pql++f++gfp+++ vg+l++ ll+pll++++e+lf e
    EHU00545.1 204 LNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGE 246
                   ****************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2256.54
//
Query:       EHU00546.1  [L=211]
Description: DNA-binding transcriptional activator, co-regulator with RcsB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-17   62.4   1.8    4.6e-17   61.3   1.8    1.6  1  GerE      Bacterial regulatory proteins, luxR family
     0.0087   16.1   0.1      0.018   15.2   0.1    1.5  1  Myc-LZ    Myc leucine zipper domain
  ------ inclusion threshold ------
      0.045   14.2   1.8       0.11   12.9   0.3    2.4  2  HTH_40    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   1.8   7.7e-21   4.6e-17       2      56 ..     141     195 ..     140     196 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 7.7e-21
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +Ls+ E+ +L+++++G  + +I+++++i++kTV++hk+ni +K++++++++++++
  EHU00546.1 141 TLSQTESNMLKMWMSGHDTIQISDKMQIKAKTVSSHKGNIKRKIKTHNKQVIYHV 195
                 69*************************************************9987 PP

>> Myc-LZ  Myc leucine zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.9e-06     0.018       8      21 ..      34      47 ..      33      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-06
      Myc-LZ  8 SekEqLRkrrEqLK 21
                S +EqL+ r+EqLK
  EHU00546.1 34 SDIEQLQQRCEQLK 47
                779**********9 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.24   1.5e+03      43      43 ..      53      53 ..      16      95 .. 0.59
   2 ?   12.9   0.3   1.9e-05      0.11       5      32 ..     149     176 ..     145     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.24
      HTH_40 43 i 43
                i
  EHU00546.1 53 I 53
                1 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.9e-05
      HTH_40   5 tlelleeglsieeIAkerglkesTIegH 32 
                  l+++++g++  +I+++ ++k +T+ +H
  EHU00546.1 149 MLKMWMSGHDTIQISDKMQIKAKTVSSH 176
                 589************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1674.13
//
Query:       EHU00547.1  [L=568]
Description: methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-56  189.1  30.8      3e-55  186.7  21.3    3.0  3  MCPsignal   Methyl-accepting chemotaxis protein (MCP) signall
    1.3e-26   93.6   0.1    1.3e-26   93.6   0.1    3.8  4  TarH        Tar ligand binding domain homologue
      8e-10   38.9   5.6    1.4e-09   38.2   0.3    3.8  3  HAMP        HAMP domain
  ------ inclusion threshold ------
      0.011   15.8  11.9        1.7    8.7   3.1    4.6  5  DUF1664     Protein of unknown function (DUF1664)
      0.039   14.1   0.4      0.039   14.1   0.4    3.3  3  OSCP        ATP synthase delta (OSCP) subunit
       0.09   13.1  13.8          7    7.0   0.2    5.0  4  BLOC1_2     Biogenesis of lysosome-related organelles complex
       0.66   10.4  11.5        3.2    8.2   1.8    3.6  3  CENP-H      Centromere protein H (CENP-H)
       0.67    9.6  33.6       0.78    9.4  18.0    3.1  3  DUF745      Protein of unknown function (DUF745)
        1.1    9.4   3.4        5.2    7.1   0.4    3.0  3  UPF0242     Uncharacterised protein family (UPF0242) N-termin
        3.3    7.9  10.3        5.5    7.2   0.3    3.3  3  Fib_alpha   Fibrinogen alpha/beta chain family
        5.1    4.9   9.1        1.4    6.8   2.9    2.3  2  Prominin    Prominin


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.3   3.7e+03     133     153 ..      86     106 ..      49     121 .. 0.44
   2 !    8.2   0.3    0.0013       2.1     118     170 ..     275     327 ..     255     329 .. 0.81
   3 !  186.7  21.3   1.8e-58     3e-55       1     172 []     340     497 ..     340     497 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 133 iveavaevadlvqeiaaasee 153
                  +++++e++d   ++aa+ e 
  EHU00547.1  86 AAARIGEMDDFNANLAATDER 106
                 233344444444444444333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
                 HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 118 egselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 + + +v +  e    i +  +e+++  +++++ +e+q+a++e+++ ++e++++
  EHU00547.1 275 SLVRTVGSVLEGAIAIYQGSSEISAGNTDLSSRTEQQAAALEQTAASMEQLTA 327
                 445667777777778999999***************************99875 PP

  == domain 3  score: 186.7 bits;  conditional E-value: 1.8e-58
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal   1 sdlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 s+la +as++A++gg  v+ vvk+m++i+ ssk+i++i++Vi++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsaqaakeie+li    
  EHU00547.1 340 SQLAADASDKARNGGDMVSGVVKTMNDISGSSKKIAEITNVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIESLI---- 434
                 57899******************************************************************************************.... PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                            e+++ v++gs++v e+g+++ eiveav +v+d+++eiaaas+eqs+ i++v+qav+e+++vt
  EHU00547.1 435 ----------AESVKLVSSGSHQVGEAGSTMGEIVEAVRRVTDIMSEIAAASDEQSRVIQQVSQAVTEMDNVT 497
                 ..........8999********************************************************986 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1   7.7e-30   1.3e-26       2     166 ..      16     180 ..      15     187 .. 0.97
   2 ?   -0.8   2.7      0.77   1.3e+03      46      90 ..     308     350 ..     287     354 .. 0.58
   3 ?    0.7   0.2      0.26   4.3e+02     131     168 ..     392     429 ..     384     437 .. 0.84
   4 ?   -0.7   1.0      0.74   1.2e+03      55      93 ..     473     510 ..     454     525 .. 0.60

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 7.7e-30
                 XXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHHHHHHH CS
        TarH   2 lkrisIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaedakellaraeeslaqseea 100
                 +++++++ ++ l+ + +  L++++ g+++++l  sn++l+++ t+++q +  L +++++l +aRl++ +ag+aa  +e++d +++la  +e+++q+e  
  EHU00547.1  16 WQNLRLVPLFSLIFGGILFLFALCIGISSYFLILSNQSLKDA-TEEIQVRNGLIDSSSNLRSARLNIIQAGAAARIGEMDDFNANLAATDERIKQAENG 113
                 689***************************************.7777**************************************************** PP

                 HHHHHTS---GGGHH.HHHHHHHHHHH.HHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHH CS
        TarH 101 wkaYlalprtaeeeealaaelkakyka.lqdglapliaaleagnleaffdlptqkiqplfealyaay 166
                  + Yl+   +++e+ +l++el++++k+ +q+gl+p+i+a ++g +e +++++t ++++l++a++a +
  EHU00547.1 114 LNVYLNRKNKTPEDVRLDEELTTRFKEyVQKGLKPMIDAGKQGSFESIIAQETDTTRKLDNAYNAVL 180
                 **************************************************************99875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.77
                 HH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHH CS
        TarH  46 nrlqqqaaLaearvsllqaRltLnragiaaladeaedakellara 90 
                  + qq+aaL ++ +s+ q   t+ + ++  ++ +++ a+++ ++a
  EHU00547.1 308 TE-QQAAALEQTAASMEQLTATVKQ-NADNAHHASQLAADASDKA 350
                 33.5566666666666666666666.4455555555555555555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.26
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayea 168
                 +l ++++a +ag++ + f++++ ++++l +   +a+++
  EHU00547.1 392 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKE 429
                 799999*****************999999988888877 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHH CS
        TarH  55 aearvsllqaRltLnragiaaladeaedakellaraees 93 
                 a a+++  +   ++++ ++  +++ +++ ++l+++a + 
  EHU00547.1 473 AAASDEQSRVIQQVSQ-AVTEMDNVTQQNASLVEEASAA 510
                 4444444444445554.3334444444445555555444 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.3   8.6e-13   1.4e-09       1      52 [.     226     277 ..     226     278 .. 0.96
   2 ?   -1.2   0.1       1.7   2.8e+03      19      29 ..     296     314 ..     290     338 .. 0.51
   3 ?    0.8   0.1       0.4   6.6e+02       6      22 ..     458     474 ..     454     499 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 8.6e-13
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +l r ++ PLr+ +++++ria+Gdl+++  ++gr+EiG L  ++ +M+++L+
  EHU00547.1 226 FLRRVVITPLRKSVAHIERIAQGDLTAPSVPHGRNEIGLLLDNLQRMQESLV 277
                 68999***********************999*******************97 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
                 HHTTT..BTSST......C CS
        HAMP  19 riaaG..dldtr......l 29 
                 +i+aG  dl++r       
  EHU00547.1 296 EISAGntDLSSRteqqaaA 314
                 6666655555554334432 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.4
                 THHHHHHHHHHHHHHTT CS
        HAMP   6 ilrPLrrLaraarriaa 22 
                 i+  +rr+++ + +iaa
  EHU00547.1 458 IVEAVRRVTDIMSEIAA 474
                 77778999999999996 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.037        61      12      93 ..      28     111 ..      20     133 .. 0.70
   2 ?    3.3   0.8     0.049        80      53      97 ..     293     337 ..     269     368 .. 0.73
   3 ?    2.2   1.3      0.11   1.8e+02      46     108 ..     304     366 ..     296     392 .. 0.55
   4 ?    2.0   0.1      0.13   2.1e+02      73     112 ..     422     461 ..     412     465 .. 0.81
   5 ?    8.7   3.1     0.001       1.7      49     112 ..     464     527 ..     453     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.037
     DUF1664  12 vvgavgYgyvwwkGwklsdlmfvTkrslsdaves..vskqleqvseslaatkrhLss.....ridrvdkkldeqkeiskeikeevtevr 93 
                 ++g++ +++    G++ s ++   ++sl+da e+  v + l + s++l++++ ++ +     ri ++d    + ++  ++++e +++++
  EHU00547.1  28 IFGGILFLFALCIGIS-SYFLILSNQSLKDATEEiqVRNGLIDSSSNLRSARLNIIQagaaaRIGEMD----DFNANLAATDERIKQAE 111
                 5677777777777877.6799999*******9962267899999999999999887622222444444....44444444444444444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.049
     DUF1664  53 vseslaatkrhLssridrvdkkldeqkeiskeikeevtevredls 97 
                  s++++a   +Lssr ++  + l+++++  +++++ v++  ++ +
  EHU00547.1 293 GSSEISAGNTDLSSRTEQQAAALEQTAASMEQLTATVKQNADNAH 337
                 457778888888888888888888888888777777776665554 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
     DUF1664  46 vskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvke 108
                 +s++ eq  ++l++t   +++  ++v ++ d+  ++s+  ++  +++r++ + ++  v+++++
  EHU00547.1 304 LSSRTEQQAAALEQTAASMEQLTATVKQNADNAHHASQLAADASDKARNGGDMVSGVVKTMND 366
                 455555555555555555555555555555555555555555555555555555444444443 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.13
     DUF1664  73 kkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 ++ ++ kei + i+e v+ v+++ +++ge  +++ e+ve 
  EHU00547.1 422 RSAQAAKEIESLIAESVKLVSSGSHQVGEAGSTMGEIVEA 461
                 466888999999********99999999988888888775 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.001
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 +++++++++aa+ ++ s+ i++v + + e+ +++++ ++ v+e++   ++++++  ++ +av+ 
  EHU00547.1 464 RVTDIMSEIAAASDEQSRVIQQVSQAVTEMDNVTQQNASLVEEASAAAASLEDQAGKLTKAVSA 527
                 5677889999999999999999999999999999999999999999999999999999999975 PP

>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   2.4e-05     0.039      13     127 ..      87     200 ..      84     204 .. 0.92
   2 ?    3.6   3.8      0.04        65      15      94 ..     311     402 ..     304     448 .. 0.66
   3 ?    0.2   0.7      0.45   7.3e+02      16      61 ..     480     525 ..     471     537 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
        OSCP  13 AkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfkeklseavknflkllaenkRlalLpeiaeefeellaeargiveaeVtsav 111
                 A + g++++++++l a ++ +++ ++  ++  n + ++ e + l eel++  ++e+v++ lk +++ ++ + +++i+++  +  ++  +  +a ++ a+
  EHU00547.1  87 AARIGEMDDFNANLAATDERIKQAENGLNVYLNRKNKTPEDVRLDEELTTR-FKEYVQKGLKPMIDAGKQGSFESIIAQETDTTRKLDNAYNAVLVKAI 184
                 667789999*********99*999999999999999999999999999988.*********************************************** PP

        OSCP 112 pLtdeqlekleaalak 127
                 +L d   + ++a+ a+
  EHU00547.1 185 KLRDIRSDFINAKAAE 200
                 ****999999888765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.04
        OSCP  15 ekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfke............klseavknflkllaenkRlalLpeiaeefee 94 
                 ++ ale++++++e+l+a+++++++ a+  s+ a +a++k+    +++++            k   +++n+++ +a +  +  L++ +e+ ++
  EHU00547.1 311 QAAALEQTAASMEQLTATVKQNADNAHHASQLAADASDKARNGGDMVSGvvktmndisgssKKIAEITNVINSIAFQTNILALNAAVEAARA 402
                 45689***********************9999999999776555555544444776765554445666777777777777666666665554 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.45
        OSCP  16 kgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelf 61 
                 +  +++v++ ++++++v +++++l e  s  a s e+++  l++ +
  EHU00547.1 480 SRVIQQVSQAVTEMDNVTQQNASLVEEASAAAASLEDQAGKLTKAV 525
                 2358999999999999999999999999888888888777666655 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.076   1.2e+02      32      72 ..      86     126 ..      70     144 .. 0.82
   2 ?    3.0   0.3      0.08   1.3e+02      52      90 ..     307     328 ..     265     338 .. 0.62
   3 ?    7.0   0.2    0.0043         7      11      79 ..     325     393 ..     318     399 .. 0.81
   4 ?    6.8   1.0    0.0049       7.9      34      83 ..     450     499 ..     419     509 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.076
     BLOC1_2  32 asekykklkdvaaslekkleklnekyeelqpylqqidqiek 72 
                 a++++ +++d  a+l+++ e++++ ++ l+ yl++ ++  +
  EHU00547.1  86 AAARIGEMDDFNANLAATDERIKQAENGLNVYLNRKNKTPE 126
                 788999*************************9987665555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.08
     BLOC1_2  52 klnekyeelqpylqqidqiekqvteLeeavseLDeyske 90 
                 +++++                  + Le++++ +++ +  
  EHU00547.1 307 RTEQQA-----------------AALEQTAASMEQLTAT 328
                 444444.................4444444444444433 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0043
     BLOC1_2  11 leaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79 
                 l+a+++  +++  +  +l   as k  +  d+++++ k++++++  ++++++  + i+ i  q++ L  
  EHU00547.1 325 LTATVKQNADNAHHASQLAADASDKARNGGDMVSGVVKTMNDISGSSKKIAEITNVINSIAFQTNILAL 393
                 55666666677777778888899999999******************************9877776654 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0049
     BLOC1_2  34 ekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavse 83 
                 e    + ++++ +++  + ++e  ++ +++ + i+q+ + vte+ ++ ++
  EHU00547.1 450 EAGSTMGEIVEAVRRVTDIMSEIAAASDEQSRVIQQVSQAVTEMDNVTQQ 499
                 555689999999********************************999876 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.8      0.01        17       8      71 ..     301     363 ..     261     390 .. 0.68
   2 ?    0.3   0.0      0.57   9.2e+02      19      47 ..     413     441 ..     407     455 .. 0.64
   3 ?    8.2   1.8     0.002       3.2       3      60 ..     460     517 ..     458     531 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.01
      CENP-H   8 rdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek.eklkeelekl 71 
                 + +lss+ ++++++l+++ ++++++++  ++ ++ n+  a++l+  a++k++   + + + + k 
  EHU00547.1 301 NTDLSSRTEQQAAALEQTAASMEQLTAT-VKQNADNAHHASQLAADASDKARNGgD-MVSGVVKT 363
                 4567888888888888888777777664.455677777778887666666666642.33333333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.57
      CENP-H  19 sqelrelqeeltevekenlrlkrknrela 47 
                 ++e+r+l ++ +++ ke+ +l +++++l+
  EHU00547.1 413 ASEVRSLAQRSAQAAKEIESLIAESVKLV 441
                 45555666666666666555555555555 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.002
      CENP-H   3 plieqrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekese 60 
                 + +++  ++ se+++ s e + + ++++++  e  +++++n++l++e    a   e +
  EHU00547.1 460 EAVRRVTDIMSEIAAASDEQSRVIQQVSQAVTEMDNVTQQNASLVEEASAAAASLEDQ 517
                 6788999999999999999999999999999999999999999999985444433333 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.36   5.9e+02      69     138 ..      52     122 ..      49     134 .. 0.70
   2 ?    8.7   2.5   0.00081       1.3      95     143 ..     311     359 ..     282     379 .. 0.71
   3 ?    9.4  18.0   0.00048      0.78       9     139 ..     388     519 ..     381     537 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.36
      DUF745  69 qelreaeavvqeekkslqsseanakaaakaakq..aqqqlealkallkaakenlenaeqvaagaqqelaekt 138
                 q+l++a + +q + + l  s++n+++a+    q  a + +  + ++ ++  ++ e+++q+ +g +  l+ k+
  EHU00547.1  52 QSLKDATEEIQ-VRNGLIDSSSNLRSARLNIIQagAAARIGEMDDFNANLAATDERIKQAENGLNVYLNRKN 122
                 66777777774.666677777777777654433115566777888888888888888888888777777766 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00081
      DUF745  95 aakaakqaqqqlealkallkaakenlenaeqvaagaqqelaektqllea 143
                  a+a +q  +++e+l+a++k+  +n+++a q+aa a+ ++++  +++  
  EHU00547.1 311 QAAALEQTAASMEQLTATVKQNADNAHHASQLAADASDKARNGGDMVSG 359
                 3344556667788888888888888888888888888887777777654 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00048
      DUF745   9 assiAqkAAqeAkaAndaqaaAaeaAakqvksqLAdkAlqAakAAeAaLaGKqqlveqleqelreaeavvqeekkslqsseanakaaakaakqaqqqle 107
                 ++ +A +AA eA +A ++    a   a++v+ +LA++ +qAak  e  +a    lv +  +++ ea + + e+ +++++    ++  a+a+++  + ++
  EHU00547.1 388 TNILALNAAVEAARAGEQGRGFAVV-ASEVR-SLAQRSAQAAKEIESLIAESVKLVSSGSHQVGEAGSTMGEIVEAVRRVTDIMSEIAAASDEQSRVIQ 484
                 556899*********8866666655.55665.6***************************************999999887766666666655555555 PP

      DUF745 108 alkallkaake...nlenaeqvaagaqqelaektq 139
                 ++++++ ++ +   + +++ + a+ a+++l++++ 
  EHU00547.1 485 QVSQAVTEMDNvtqQNASLVEEASAAAASLEDQAG 519
                 55555544433000333333444555666776655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.64     1e+03      71     152 ..      94     115 ..      16     172 .. 0.60
   2 ?    0.9   0.0      0.26   4.2e+02      94     117 ..     307     331 ..     255     391 .. 0.62
   3 ?    7.1   0.4    0.0032       5.2      83     136 ..     464     517 ..     412     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.64
     UPF0242  71 eekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellq 152
                 +  +a+l ++de +k+ e+                                                             l+
  EHU00547.1  94 DDFNANLAATDERIKQAEN------------------------------------------------------------GLN 115
                 2222333333333333333............................................................332 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
     UPF0242  94 lqeee.eeLkeeldakeeelerlke 117
                 ++e++   L++  +++e++ +  k+
  EHU00547.1 307 RTEQQaAALEQTAASMEQLTATVKQ 331
                 2222101222222222222222222 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0032
     UPF0242  83 glktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeel 136
                  ++ +  ++  + +e+ +  +++++  +e+ + +++n++L e+++a+a+  e++
  EHU00547.1 464 RVTDIMSEIAAASDEQSRVIQQVSQAVTEMDNVTQQNASLVEEASAAAASLEDQ 517
                 44555668999999******************************9999877765 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.41   6.8e+02      50     121 ..     103     186 ..      79     191 .. 0.50
   2 ?    4.8   0.8     0.018        29      43     114 ..     314     384 ..     295     402 .. 0.50
   3 ?    7.2   0.3    0.0034       5.5      33      84 ..     458     509 ..     446     529 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.41
                 HHHHHHHHHHHHHHHHHHHHHHHHH..........H.HHHHHHHHHHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  50 stkeaeelvkeikdslrekqkskkd..........n.dnvikksskeleeeilrlketidaqe.snirvLqnvlesneqkiqkL 121
                 + + +++  + ++ +l++k+k+ +d            + v k ++ +++   +   e+i+aqe  + r+L n +++  +k  kL
  EHU00547.1 103 TDERIKQAENGLNVYLNRKNKTPEDvrldeelttrFkEYVQKGLKPMIDAGKQGSFESIIAQEtDTTRKLDNAYNAVLVKAIKL 186
                 333333333333333333333333322222222212122334456666655554445555555578888888887777666665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.018
                 CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH CS
   Fib_alpha  43 eleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesn 114
                  le+ + s ++   +vk+  d  +++ + ++d +   ++  +++   +++  + i+   ++i +++nv++s 
  EHU00547.1 314 ALEQTAASMEQLTATVKQNADNAHHASQLAADASDKARNGGDMVS-GVVKTMNDISGSSKKIAEITNVINSI 384
                 444444444444444444444444444444444444555555555.55555555555555555555555554 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0034
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikkssk 84 
                 + + ++++++ ++ei+  + e +++++++++ ++e  + +++n +++++ s 
  EHU00547.1 458 IVEAVRRVTDIMSEIAAASDEQSRVIQQVSQAVTEMDNVTQQNASLVEEASA 509
                 5567888899999999999999999999999999999999999888777654 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   2.9   0.00084       1.4     623     734 ..     312     430 ..     294     440 .. 0.81
   2 ?    0.7   0.8     0.058        95     349     399 ..     458     506 ..     428     531 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00084
    Prominin 623 kvnletlaekleelanelsngkknlk..qslkneaqdlraiqqelvlplessvkklkksvkklde.....ensdlqesikkllaaveraenflkkngse 714
                    le++a+++e+l  +++++ +n++  ++l  +a+d  +   ++v  + ++++++  s kk+ e     ++  +q++i  l aave+a    + +g  
  EHU00547.1 312 AAALEQTAASMEQLTATVKQNADNAHhaSQLAADASDKARNGGDMVSGVVKTMNDISGSSKKIAEitnviNSIAFQTNILALNAAVEAARAGEQGRGFA 410
                 56799999999999999988885555115666667777777789*********************988888889*****************99999999 PP

    Prominin 715 iinneskklldrileqfeeY 734
                 ++++e + l++r  +  +e 
  EHU00547.1 411 VVASEVRSLAQRSAQAAKEI 430
                 99999999999988776665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.058
    Prominin 349 ipekvknqtaevvpdlkkalakgreqikklakkiprealdavisdlenter 399
                 i e v++ ++++++++  a ++++  i+++++++ +e+ + + ++ + +e+
  EHU00547.1 458 IVEAVRR-VTDIMSEIAAASDEQSRVIQQVSQAV-TEMDNVTQQNASLVEE 506
                 4444332.23344444444444444444444444.2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1745  (0.0973284); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.40
# Mc/sec: 4219.00
//
Query:       EHU00548.1  [L=64]
Description: dextransucrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-37  124.5   0.2    1.1e-36  124.3   0.2    1.0  1  DSRB      Dextransucrase DSRB


Domain annotation for each model (and alignments):
>> DSRB  Dextransucrase DSRB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.2   5.9e-41   1.1e-36       1      60 [.       1      60 [.       1      61 [. 0.99

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 5.9e-41
        DSRB  1 mkvndrvtvktDgeerReGtiLaveeFseGvmYLvaLedYPeGiWFFnekesadGvFvep 60
                mkv+drv+vktDg++rR GtiLave+F+eG+m+LvaL+dYP+GiWFFne++++dGvFvep
  EHU00548.1  1 MKVDDRVSVKTDGGPRRIGTILAVEPFNEGTMFLVALDDYPQGIWFFNENNHRDGVFVEP 60
                9**********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 540.26
//
Query:       EHU00549.1  [L=52]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-22   78.2   8.9    4.1e-22   78.1   8.9    1.0  1  Pmp3      Proteolipid membrane potential modulator
  ------ inclusion threshold ------
        1.1    8.5   3.1        1.1    8.5   3.1    1.0  1  DUF4191   Domain of unknown function (DUF4191)


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   8.9   4.6e-26   4.1e-22       1      48 [.       2      49 ..       2      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 4.6e-26
        Pmp3  1 dillillaiilPPlaValksGcsadllinilLtllgylPgviHAfyii 48
                d+l+il+ai+lPPl+V+l++G++ ++++nilLtl+gy+Pg++HA+++i
  EHU00549.1  2 DLLRILIAILLPPLGVFLQVGFGGAFWLNILLTLCGYIPGIVHAVWVI 49
                79*********************************************9 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.1   0.00013       1.1      25      72 ..       3      52 .]       1      52 [] 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00013
     DUF4191 25 llwlllaaflvvvvvfvvlglllg.s.lilllilgillgllvalivltrr 72
                ll +l+a++l ++ vf+ +g+    +  ill++ g + g++ a++v++rr
  EHU00549.1  3 LLRILIAILLPPLGVFLQVGFGGAfWlNILLTLCGYIPGIVHAVWVIARR 52
                5678999999999999999998322226667777888**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 468.45
//
Query:       EHU00550.1  [L=64]
Description: hypothetical protein CKS_2566 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   22.2   0.0    0.00017   21.8   0.0    1.2  1  DUF2525   Protein of unknown function (DUF2525)


Domain annotation for each model (and alignments):
>> DUF2525  Protein of unknown function (DUF2525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   9.6e-09   0.00017       2      46 ..      18      62 ..      17      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.6e-09
     DUF2525  2 vdALLaAineisesevqefidnddahrvtvdgreydtyrELaeaF 46
                +dALL Ai+  + ++vq++ +++ a+  +  g     +rE ae F
  EHU00550.1 18 MDALLHAIQRDTAGQVQDYFSPQVAQTEKNAGGPTAPCREPAEGF 62
                7*******************************9*******99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 586.00
//
Query:       EHU00551.1  [L=261]
Description: putative mannosyl-3-phosphoglycerate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.7   0.0    1.3e-19   70.9   0.0    2.0  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
    6.3e-12   45.5   0.0    6.5e-07   29.1   0.0    2.1  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
    0.00044   19.5   0.0     0.0017   17.6   0.0    1.8  2  Trehalose_PPase  Trehalose-phosphatase
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.45   10.8   0.1    2.1  1  Hydrolase        haloacid dehalogenase-like hydrolase
       0.15   12.1   0.0       0.94    9.5   0.0    2.0  1  HAD_2            Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   3.7e-23   1.3e-19       1     229 [.      10     223 ..      10     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 3.7e-23
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC.SEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTTCE CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgld.lpvialNGaliddekgkilykstiskedvkeiikllkennve 97 
                  i++DlDG Ll+++    + +   ++ ++++++ vvi++     ++lp+ +++g++ +p+ia NGa+ ++ ++k + + + +k ++  i  +l+ ++++
   EHU00551.1  10 IVTDLDGSLLDHHDYNWDAATTWLETFSQHQVPVVICSSKTAAEILPLQRKIGISgTPFIAENGAVLYFREDKPV-RIPDDKLNYVAICRILSAMKQQ 106
                  89*********999999**************************************************99999998.3333444555677777777778 PP

                  EEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE.EES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHH CS
  Hydrolase_3  98 illytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakil.ilkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkk 194
                  + +++ +++  ++             ++ +     + +   ++++  ++   +++e ld+++ +l++       + + ++ ++ +mp+   Kg+al+k
   EHU00551.1 107 FRFSGFQDFSDSDV------------SAMTGLPEAEAALARQRDASEVIvWRDTDEALDRFRHALADYH----LTLTQGGRFWHVMPARSGKGHALHK 188
                  88888777666555............3344444444444444555555548999999999999999996....67889999***************** PP

                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmg 229
                  l+++++ +   +i  GDg ND +ML a+++++ ++
   EHU00551.1 189 LLSHYSHQDLITIGLGDGPNDAPMLDAVDYAIVIK 223
                  *******************************9886 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.2e-06     0.019       3      58 ..       8      63 ..       6      91 .. 0.88
   2 !   29.1   0.0   1.8e-10   6.5e-07     153     245 ..     169     257 ..     145     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.2e-06
                EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT- CS
        S6PP  3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknl 58
                l++v+dLD++l+d+ + + ++  ++le+ ++++v +v+++ ++ ++ + l+++  +
  EHU00551.1  8 LMIVTDLDGSLLDHHDYNWDAATTWLETFSQHQVPVVICSSKTAAEILPLQRKIGI 63
                79*******************************************99999998876 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 1.8e-10
                 TTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHHHHHHH--TTE..EE-SS-THHHHHHHHHHT CS
        S6PP 153 sgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeellqwllenakeneriylaeercaaGileglahf 245
                  g++  v+P r++kg+Al+ L++++  +   ++  Gd  nD+ +l +  +++v++  +++        ++++ ++y+ +++  +G  egl hf
  EHU00551.1 169 GGRFWHVMPARSGKGHALHKLLSHYSHQDLITIGLGDGPNDAPMLDAVDYAIVIKGFSKN----PVTLTRNDGQVYHTTHHGPEGWREGLDHF 257
                 578889**************************************************9999....7888899999******************9 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.17   6.3e+02      23      67 ..      28      74 ..      11      82 .. 0.62
   2 !   17.6   0.0   4.6e-07    0.0017     130     201 ..     149     216 ..     135     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.17
                     THHHHHHHHHTTS-..EEEE-SS-HHH...HHHHH---SSEEEEGGGT CS
  Trehalose_PPase 23 ellslLkkLasdpknvvaivSGrslke...eellvkvpelglaaeHGa 67
                     ++++ L++ +++ +  v+i S +  +e    ++  ++++ + +ae+Ga
       EHU00551.1 28 AATTWLETFSQH-QVPVVICSSKTAAEilpLQRKIGISGTPFIAENGA 74
                     444555555555.23467777777666666777778888888888887 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4.6e-07
                      HHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS--------EEEEEE-SSTTHHHHTTS CS
  Trehalose_PPase 130 kelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsadseddfvlciGDdrtDedmFsvl 201
                      +e+++  + +l d+  l +tqg ++  v p++  KG a+++ll+++ ++   d + + +GD   D  m +++
       EHU00551.1 149 DEALDRFRHALADY-HLTLTQGGRFWHVMPARSGKGHALHKLLSHYSHQ---DLITIGLGDGPNDAPMLDAV 216
                      56677778888899.*********************************9...999999***99999887765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.45     121     210 .]     127     217 ..       9     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                 TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES...STTTSHHHHHHHHHHH......TSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 121 peaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet...vakpspegkvaaireL......qgkpeevamVGDgvnDaaalaaAg 210
                 pea+ a+a+ +      v++  d  e  +r  + l     d +++ +  +   +  p  +gk +a+ +L      q  +  ++  GDg+nDa++l a++
  EHU00551.1 127 PEAEAALARQR--DASEVIVWRDTDEALDRFRHALA----DYHLTLTQGGrfwHVMPARSGKGHALHKLlshyshQDLI--TIGLGDGPNDAPMLDAVD 217
                 66666666633..44556666666666666666644....222333333355666677788888888884443323335..9999**********9876 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00026      0.94       2      81 ..      11     167 ..      10     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00026
       HAD_2   2 iFDlDgTlldteeliiqafnelleey......................................................................... 27 
                 + DlDg lld  ++  +a++++le +                                                                         
  EHU00551.1  11 VTDLDGSLLDHHDYNWDAATTWLETFsqhqvpvvicssktaaeilplqrkigisgtpfiaengavlyfredkpvripddklnyvaicrilsamkqqfrf 109
                 569********************9999999999999999999999999999999999999999999999999999999999999999999999999998 PP

       HAD_2  28 .glselseeelrkliglslrellrklgeseeeee.....kieellrkyneekkkkevkpy 81 
                  g++++s+++++ + gl+  e+    + +    e     + +e l+++++ + ++++++ 
  EHU00551.1 110 sGFQDFSDSDVSAMTGLPEAEAALARQRDAS--EvivwrDTDEALDRFRHALADYHLTLT 167
                 8999999999999999998776544444333..223567677777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2155.41
//
Query:       EHU00552.1  [L=406]
Description: hypothetical protein CKS_2562 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3184.67
//
Query:       EHU00553.1  [L=60]
Description: uncharacterized DUF2158 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0014   18.3   0.0     0.0017   18.1   0.0    1.1  1  DUF2158        Uncharacterized small protein (DUF2158)
  ------ inclusion threshold ------
      0.039   12.6   0.0      0.039   12.6   0.0    1.0  1  LA-virus_coat  L-A virus, major coat protein


Domain annotation for each model (and alignments):
>> DUF2158  Uncharacterized small protein (DUF2158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-07    0.0017       4      52 .]       7      48 ..       4      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-07
     DUF2158  4 dVVkLKsGGpeMTVt..aaGgviaapgeslkCqWFdgegelqeevFpedsL 52
                d V+ K GG  M Vt  a+G        +++  W+dg    ++e+F  d+L
  EHU00553.1  7 DEVQHKDGGQTMVVTghASG--------MVEYRWYDGYAV-RSEAFRTDEL 48
                55899**********77777........*********998.*****99987 PP

>> LA-virus_coat  L-A virus, major coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.4e-06     0.039      92     124 ..       7      38 ..       2      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-06
                    CCHHHTSS--CCHHHHHHHHCTTT----B-CCH CS
  LA-virus_coat  92 qelkssagiqsnivashaynvaswrwydnhval 124
                    +e++   g q+ +v++ha  +  +rwyd + a+
     EHU00553.1   7 DEVQHKDGGQTMVVTGHASGMVEYRWYDGY-AV 38 
                    788999999*******************86.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 430.62
//
Query:       EHU00554.1  [L=43]
Description: hypothetical protein CKS_2560 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 387.65
//
Query:       EHU00555.1  [L=300]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-113  378.2  10.9   2.8e-113  378.0  10.9    1.0  1  DUF808    Protein of unknown function (DUF808)


Domain annotation for each model (and alignments):
>> DUF808  Protein of unknown function (DUF808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.0  10.9  1.6e-117  2.8e-113       1     304 []       4     291 ..       4     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 378.0 bits;  conditional E-value: 1.6e-117
      DUF808   1 sgllaLlDdiaalaklaaaslDDvaaaakkaakkaagvvvDDlavtaqqvsgvkaeRElpvvwkiakgSllNKlvillPaalllsafapwlitplLmlG 99 
                 ++ll+LlDdia+l       lDD++++ k+aakk+agv++DDl+++aqqvsgvka+ Elpvvw +akgS+lNK +il+P+al++safapwlitplLm+G
  EHU00555.1   4 TSLLTLLDDIATL-------LDDISVMGKVAAKKTAGVLGDDLSLNAQQVSGVKANCELPVVWGVAKGSFLNK-LILVPLALIISAFAPWLITPLLMIG 94 
                 59***********.......*****************************************************.9************************ PP

      DUF808 100 gayLcfEGaeKvlekllhkeee.....eeeeeeeaeeadlaelEkekvkgairtDfiLSaEiivialgevaeeslltqvlvlvvvavliTvgvYGlVal 193
                 gayLc+EG+eKvl++l+h++++     ++++ ++ +++d +e+Ek+kvkga+rtDfiLSaEi++i+lg v+e++ll+qvl+l+ +a+l+T+gvYG+Va+
  EHU00555.1  95 GAYLCYEGVEKVLHSLQHDKQQnspeaRQQRLDNLAKQDPREFEKKKVKGAVRTDFILSAEIVAITLGIVSEAPLLNQVLILAGIAILVTIGVYGIVAG 193
                 ****************877766444333333344556699*********************************************************** PP

      DUF808 194 ivklDdvGlalakkkksklarklGrglvkamPkllkllsvvGtaAmllVgggilvhgleelglealaelvhhlaeavaeaaaalgavlewlvetllsav 292
                 ivk+Dd+G++l++ k+s++a+++G +l++a+P+l+k+l+vvGt+Am+lVgggi+vhg++          +hh++e++ +    ++++++ l++  +++v
  EHU00555.1 194 IVKIDDLGFWLKQ-KSSRVAQSVGAVLLAAAPWLMKILTVVGTLAMFLVGGGIIVHGIT---------PLHHFIENAIA---PFSGLVSGLLSNGANLV 279
                 *************.569******************************************.........89999988876...6899************* PP

      DUF808 293 vGlvvGavvvav 304
                 +G+++G +v++v
  EHU00555.1 280 IGFIIGSIVLLV 291
                 ********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2673.31
//
Query:       EHU00556.1  [L=91]
Description: hypothetical protein CKS_2558 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 797.57
//
Query:       EHU00557.1  [L=159]
Description: DNA mismatch endonuclease of very short patch repair [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-30  105.0   0.1    2.3e-30  104.2   0.1    1.4  1  Vsr        DNA mismatch endonuclease Vsr
  ------ inclusion threshold ------
      0.029   14.6   0.4       0.37   11.0   0.4    2.2  1  MTES_1575  REase_MTES_1575
      0.089   12.6   0.1          9    6.1   0.0    2.2  2  DUF5615    Domain of unknown function (DUF5615)


Domain annotation for each model (and alignments):
>> Vsr  DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.1   3.9e-34   2.3e-30       1      73 [.       2      74 ..       2      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 3.9e-34
                XXSSXHHHHHHHHHTXXSSSXHHHHHHHHHHHHTT--EEES-TTSTT--SEEEGGGTEEEEEE-TTTTT-SST CS
         Vsr  1 aDvydkakRskvmakikskdtkpElrlaklltglGlryRkndkslaGkPDvvlkkykvvvFvhGcFWHghdce 73
                aDv+  ++Rsk+m++i+ +dt++E r+a ll   G+ yR++dk+l+G+PD+vl  ++ ++FvhGcFWH h+c+
  EHU00557.1  2 ADVHSSETRSKNMRAIRQQDTAIEQRIALLLKDRGFTYRVQDKNLPGRPDFVLTAHQAIIFVHGCFWHRHHCY 74
                69**********************************************************************8 PP

>> MTES_1575  REase_MTES_1575
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   6.3e-05      0.37      51      79 ..      89     118 ..      24     138 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.3e-05
   MTES_1575  51 s.keardrdierqevLerlGWkilRiwssd 79 
                 + +++++rd +  + L++ GWk+l iw+ +
  EHU00557.1  89 KiNSNVERDHRYVRQLRESGWKVLIIWECA 118
                 3478999********************865 PP

>> DUF5615  Domain of unknown function (DUF5615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0055        33       6      37 ..      21      51 ..      19      57 .. 0.85
   2 ?    6.1   0.0    0.0015         9      10      43 ..      97     133 ..      89     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0055
     DUF5615  6 DenlsprlvellreaghdvlhvrelglegasD 37
                D  + +r++ ll+++g+ +  v++ +l+g +D
  EHU00557.1 21 DTAIEQRIALLLKDRGF-TYRVQDKNLPGRPD 51
                66788999999999999.88999999999988 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0015
     DUF5615  10 sprlvellreaghdvlhvrelgleg...asDeeiley 43 
                 ++r v++lre g++vl + e+ l+g    +D++ le+
  EHU00557.1  97 DHRYVRQLRESGWKVLIIWECALRGklrLDDDALLER 133
                 4799****************99998888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1504.55
//
Query:       EHU00558.1  [L=462]
Description: DNA cytosine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-74  250.3   0.0    3.9e-74  250.0   0.0    1.1  1  DNA_methylase  C-5 cytosine-specific DNA methylase
    2.8e-14   52.8   0.0    1.7e-13   50.2   0.0    2.2  2  DNA_meth_N     DNA methylase N-terminal domain


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   0.0   4.3e-78   3.9e-74       1     331 [.      89     448 ..      89     451 .. 0.88

  Alignments for each domain:
  == domain 1  score: 250.0 bits;  conditional E-value: 4.3e-78
                    -EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-......-SEEEES-TTTS-...............GS--.-SEEEE---GGGTEC CS
  DNA_methylase   1 lkfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfk.....kvsigDitkidkk...............klpediDlLvgGfPCqpfSv 76 
                    ++f+dLfaGiGG+r g+e++g++cv+ se++k+a+ tY+an+       + + Di+++++                 +p d+ +L++GfPCqpfS 
     EHU00558.1  89 FRFVDLFAGIGGIRRGFERIGGKCVFTSEWNKEAIRTYRANHYsdpleHHFNTDIRQVTQPaglydetaiyssidaAIP-DHQVLLAGFPCQPFSL 183
                    79****************************************9999966777899999988999********9999999.7*************** PP

                    TSE........E--TTSGGG.HHHHHHHHHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEE........EEEEEGGGTT-SB--EE CS
  DNA_methylase  77 aGk........qkgfedtrg.tLffeiiriikekkPkvfllENVkgLlkhdkgktlkvilekleelGYevs........ykllnasdyGvpQnReR 155
                    aG          +gfe + + tLff+++ri+ +kkP +f+lENVk+L++hdkg+t+ +i+++l+elGY v         +k+++a+++  pQ ReR
     EHU00558.1 184 AGVskknalgrAHGFECQAQgTLFFDVARILAAKKPPFFVLENVKNLKSHDKGRTFAIIMDTLDELGYAVAdadasapdPKVIDARHF-LPQHRER 278
                    **8665555555666643326*******************************************************************.9****** PP

                    EEEEEEEGGG----------SS---GGG.......TSGGGTTS-EEBTTTB--GGGSSSTT-EE--.......S---HHHTS--B--TTS...-B- CS
  DNA_methylase 156 vfivgirkdlelnvlvkvkefrfpkkkd..leasktlrdlleekseldeektalsdklvekeekikkttkaseegypkelsrnridkveelkglsa 249
                    +++vgir d         ++f++ + k+   ++ + l++lle     +++k+ ls+ l+    + +k++ka ++g+   l++   +    +++lsa
     EHU00558.1 279 IVLVGIRRDI-----AGCENFTLRDIKRffPAQVPSLQSLLEA---APDDKYILSQVLWRYLYQYAKKHKALGNGFGFGLNDP-RNLQCCVRTLSA 365
                    ********94.....7899999999999988999********9...6*********999999999999*********656666.333444588999 PP

                    ---S-STT--B-TTS---EEEETTEEE--T.....TTGGG--B-BHHHHHHHHT--TT....-----SBHHHHHHHHTS--HHHHHHHHH CS
  DNA_methylase 250 trrksgrgeklekelaeagklqknkerfkp....viekkriRrLtprEaarlqGfPdd....fefgskksaaykqiGnsVpvpvieaiak 331
                     ++k g+     + l ++g   +++e  ++     +  +r+RrLtprE+ar++Gf+d     f +++++++aykq+GnsV+vpv  a+a+
     EHU00558.1 366 RYYKDGS-----EILIDRGWDADKGE--RDfldaTNMAHRPRRLTPRECARIMGFDDAgsepFRIPVSDTQAYKQFGNSVVVPVFAAVAQ 448
                    9999996.....44445444444444..3445567889***********************************************99986 PP

>> DNA_meth_N  DNA methylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.9e-17   1.7e-13       2      57 .]      22      77 ..      21      77 .. 0.97
   2 ?   -0.7   0.0      0.16   1.4e+03      38      52 ..     395     409 ..     392     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.9e-17
  DNA_meth_N  2 LLeqvLeIYDqKtvaeeLrkvgeseWsretLnRwvkgksaarrLteaEvalLrkLL 57
                LL+qvL+IY ++++++ L ++g ++Ws++ +nR+ +gks+  +L+ aE +l + LL
  EHU00558.1 22 LLHQVLSIYSVRDIVARLHQAGFAHWSPTLINRIRQGKSTLPALSTAERDLFERLL 77
                9***********************************************99999887 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.16
  DNA_meth_N  38 gksaarrLteaEval 52 
                  + ++rrLt +E+a+
  EHU00558.1 395 MAHRPRRLTPRECAR 409
                 56789*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3351.66
//
Query:       EHU00559.1  [L=534]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-27   96.9  18.2    2.5e-26   92.5   8.8    2.6  2  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    2.3e-22   79.7   4.3    2.3e-22   79.7   4.3    4.1  5  TarH           Tar ligand binding domain homologue
     0.0046   16.0  10.6     0.0086   15.1   3.2    2.4  2  IFT57          Intra-flagellar transport protein 57
  ------ inclusion threshold ------
      0.011   14.0   9.0       0.11   10.6   0.4    2.5  3  EzrA           Septation ring formation regulator, EzrA
       0.48    8.9  15.2      0.021   13.3   3.5    2.4  3  Corona_S2      Coronavirus S2 glycoprotein
       0.52   10.7   7.2        6.9    7.1   0.9    2.5  2  Fez1           Fez1
        1.4    9.2  17.7        5.3    7.4   0.2    5.3  4  DUF948         Bacterial protein of unknown function (DUF948)
        1.6    8.8  19.0        3.1    7.8   3.8    4.0  5  Laminin_II     Laminin Domain II
        1.7    8.7  13.3         10    6.2   1.1    3.7  3  DUF1664        Protein of unknown function (DUF1664)
          2    9.0  10.2       0.77   10.3   0.6    2.9  2  DUF16          Protein of unknown function DUF16
        3.7    7.9  10.1        0.7   10.2   0.1    3.4  3  PP_kinase_N    Polyphosphate kinase N-terminal domain
        4.6    7.2  12.7        6.7    6.7   1.5    3.1  3  DUF489         Protein of unknown function (DUF489)
        5.6    5.8  13.6          7    5.4   2.1    2.5  2  Spc7           Spc7 kinetochore protein
        6.1    7.0  11.2        1.5    9.0   0.4    2.9  3  Fib_alpha      Fibrinogen alpha/beta chain family
        6.3    7.1   6.3        8.5    6.7   0.5    2.5  2  NifQ           NifQ


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   4.1    0.0011       1.3      95     158 ..     278     345 ..     265     353 .. 0.64
   2 !   92.5   8.8   2.1e-29   2.5e-26       2     169 ..     343     496 ..     340     499 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
                 H..............HHHHHHHHHHHHHHHH....HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  95 iieiqkeindsvesleetrqrveegselvee....tgealkeiveavaevadlvqeiaaaseeqsasi 158
                 +  i++ein+ ++s+ e  ++++++ ++v+e     ++++++i+++ ++v+++v++ +  s++ ++ +
  EHU00559.1 278 LRTIVAEINTIAASVAEGAREMQHTNDQVSEhykvQNSSFSHISQRLHRVSEEVENSTLFSQQAAQQA 345
                 45566666777777666666666666666551111456899999999999999999666655554433 PP

  == domain 2  score: 92.5 bits;  conditional E-value: 2.1e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 + a+ a e  ++   +v+++  qm++i +ss ei+ i+e +d+++ QT lLALNAaiE A AG +Gr F+VVA+E  +L ++s ++a++i+ l+     
  EHU00559.1 343 QQAHVADELMQQCASQVDEMEVQMRHIVDSSGEIAGIVELLDGLSLQTRLLALNAAIESAHAGVYGRSFSVVAKEMGTLSNKSGESAQQINGLV----- 436
                 567788888899999*******************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveeva 169
                          ++t+ +++eg ++v++ +  + +i+++v+ v ++++e+   ++ qs+ ++ ++  v +++
  EHU00559.1 437 ---------NNTQLHISEGFNKVKSLEALFYQISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVALD 496
                 .........999***********************************************9999887765 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   4.3     2e-25   2.3e-22       6     162 ..      29     179 ..      28     198 .. 0.94
   2 ?   -2.1   2.5       2.6     3e+03       7      27 ..     211     231 ..     199     252 .. 0.59
   3 ?   -0.4   1.9      0.81   9.7e+02      30      95 ..     296     360 ..     287     366 .. 0.74
   4 ?   -2.9   0.0       4.6   5.5e+03     131     169 ..     394     432 ..     392     438 .. 0.83
   5 ?   -1.8   0.4       2.2   2.6e+03      38      99 ..     508     528 ..     463     532 .. 0.58

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 2e-25
                 XXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS....SHHHHHHHHHHHHHHHH CS
        TarH   6 sIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaeda....kellaraeeslaqseea 100
                 s+r  ++l ++l+++L+ +  +l    +s+++ +l++++ +r    a L+ ar +ll+a+++  ragi++++d+  ++    k+l ++a++sl  +e+ 
  EHU00559.1  29 SLRGNFMLFVVLFCLLQSIGIVLLTAQVSHTKVNLTQASAMR-DRLALLDHARIELLTASDNSHRAGIYLMEDQKSGSvdswKSLAETAKSSLVHAEQL 126
                 577889************************************.******************************************************** PP

                 HHHHHTS---GGGHH.HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHH CS
        TarH 101 wkaYlalprtaeeeealaaelkakykalqdglapliaaleagnleaffdlptqkiqplfeal 162
                 +++Y+a+p+ +         l++ +  l +gl+++++ lea+n++aff +p+q++q++f+++
  EHU00559.1 127 FAQYHAVPKGE---------LEQGFMMLTQGLEEQLKGLEANNIDAFFMVPMQAYQQQFNSA 179
                 *********99.........899************************************964 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
                 XXXXXXXXXXXXXXXXXXXXS CS
        TarH   7 IrtrLllvlallgvLllvsgg 27 
                 ++t+Ll++l l g  ll+ g+
  EHU00559.1 211 LVTGLLFTLLLTGGVLLLRGV 231
                 345555555555555555554 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.81
                 SSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS...SHHHHHHHHHHH CS
        TarH  30 lsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaeda...kellaraeesla 95 
                    ++++nd++ e y+ +    + ++ ++++l + +  +   ++ + +++a++a    el+++  ++++
  EHU00559.1 296 AREMQHTNDQVSEHYKVQ---NSSFSHISQRLHRVSEEVEN-STLFSQQAAQQAhvaDELMQQCASQVD 360
                 556889999999988877...88999999999999999998.666666666666677777777766665 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.6
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH. CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayeaL 169
                 +l ++i+  +ag + + f ++++++  l ++   +++++
  EHU00559.1 394 ALNAAIESAHAGVYGRSFSVVAKEMGTLSNKSGESAQQI 432
                 678888999999999999999999999999988888875 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.2
                 HHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHHHHHH CS
        TarH  38 dalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaedakellaraeeslaqsee 99 
                 +++r+++t +  q++ L                                        a+s +
  EHU00559.1 508 RQVRTADTLQ-HQASRL----------------------------------------AESAQ 528
                 3334444444.444444........................................44444 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.2   7.2e-06    0.0086     226     322 ..     271     367 ..     268     382 .. 0.92
   2 !    5.1   0.8    0.0078       9.4     234     308 ..     423     500 ..     395     532 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.2e-06
       IFT57 226 leqmkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqeme 322
                 +  m++  ++i ++++++  ++++  ++++ t +++++  k  ns++++  q ++ ++ee+++ +   +q+ ++ +   + +++   ++++++ +m 
  EHU00559.1 271 VADMRQGLRTIVAEINTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVENSTLFSQQAAQQAHVADELMQQCASQVDEMEVQMR 367
                 678999999******************************************************************9999988999999888888886 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0078
       IFT57 234 ksieeslpetksqlkklhedisktlekiesrEk...ylnsqleellqeyreaqeelsevkekykqlsegvseltrela 308
                 ++  es ++++  +++ +  is+  +k++s E    ++ ++++  +++++e++e+ ++++++++ + ++v +l +el+
  EHU00559.1 423 NKSGESAQQINGLVNNTQLHISEGFNKVKSLEAlfyQISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVALDKELH 500
                 444444444445555555555555566666554111345555555555555555555555555555555555555554 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   1.9e+03     110     171 ..      95     154 ..      75     160 .. 0.57
   2 ?   10.6   0.4   9.3e-05      0.11      42     133 ..     281     375 ..     274     391 .. 0.79
   3 ?    8.2   1.0   0.00053      0.63      94     157 ..     441     504 ..     416     533 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHH CS
        EzrA 110 ldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsygealeelekqle 171
                 ++ +e +     +  k l e  + +  + e+l  +Y+ + k  l++   +   ++ le+ql+
  EHU00559.1  95 IYLMEDQKSGSVDSWKSLAETAKSSLVHAEQLFAQYHAVPKGELEQG--FMMLTQGLEEQLK 154
                 55555555555555555666666666666666666665555544443..3444555555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9.3e-05
                 HHHTTTSSS-S---T..TTHHHHHHHHHHHHHHHHHHTHHHHHT-GGGT--S-SHHHH..HTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT CS
        EzrA  42 vqeelskvkklnltg..eseekfeewkkkwdeiktkklpeieellfeaeelldkykfk..kakkklaeleeeldeveekikkileelkelteseek 133
                 +  e++++ +    g  e++++ +++ + ++ ++++++ +i+++l ++ e +++  ++  +a ++   ++e ++++ ++++++  +++++++s  +
  EHU00559.1 281 IVAEINTIAASVAEGarEMQHTNDQVSEHYK-VQNSSFSHISQRLHRVSEEVENSTLFsqQAAQQAHVADELMQQCASQVDEMEVQMRHIVDSSGE 375
                 5667777777777776677777777777775.6777999999999999999998887622677788889999999999999999999999998765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00053
                 HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTT CS
        EzrA  94 ykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrf 157
                  ++ +  +k+++le+  +++ +++ ++ ++lkel e+ + ++ ++  +  +   l k+l++n+ 
  EHU00559.1 441 LHISEGFNKVKSLEALFYQISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVALDKELHTNEG 504
                 55556668999************************************************99975 PP

>> Corona_S2  Coronavirus S2 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   1.9e+03     105     139 ..     159     201 ..     120     225 .. 0.41
   2 ?   13.3   3.5   1.8e-05     0.021     254     342 ..     268     354 ..     258     367 .. 0.85
   3 ?    2.9   1.6     0.025        30     270     320 ..     427     480 ..     378     531 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                 HHHHHHHTTSSEE....ESHHSHS..EETTEEGTTT....SBT CS
   Corona_S2 105 aevsellavskka....fklaslsavsiGefnlssl....lpd 139
                  +++ +++v  +a    f+ a  +++   + +ls +    l +
  EHU00559.1 159 NNIDAFFMVPMQAyqqqFNSAWFNEITQANKQLSAVnnltLET 201
                 3333333332222111123333333344444444444433222 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSHHTTSSHSHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Corona_S2 254 fnkaigniseglatvatalakiqdvvnkqgqalnelvaqlsknfgaissviqdiydrldkieadaqvdrlitGrlaalnvfvsqkltra 342
                 f +a++++++gl+t+   ++ i   v + ++ ++++  q+s+ ++   s+ ++i +rl +++ ++    l     aa +++v+++l+++
  EHU00559.1 268 F-NAVADMRQGLRTIVAEINTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVENSTLFSQ-QAAQQAHVADELMQQ 354
                 4.59**********************************************************99987777654.456667777666655 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.025
                 SHHHHHHHHHHHHHHHHHH...HHHHHSHHTTSSHSHHHHHHHHSCHHHHHHHH CS
   Corona_S2 270 talakiqdvvnkqgqalne...lvaqlsknfgaissviqdiydrldkieadaqv 320
                  + ++i  +vn+    ++e    v++l+  f  is +++++  +l ++e +a  
  EHU00559.1 427 ESAQQINGLVNNTQLHISEgfnKVKSLEALFYQISQSVSAVVTQLKELEENATA 480
                 345667776766555555422246777777888888888888888877655432 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.9    0.0057       6.9      42     144 ..     273     366 ..     260     405 .. 0.51
   2 ?    6.8   0.7     0.007       8.4      35     100 ..     466     531 ..     411     534 .] 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0057
        Fez1  42 elrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaq.rqeaeeleelkrever 139
                 ++r+ l++  +ei+++ +s+ e ++e+++ +++++++           +  ++ ++++ ++l+++s+e e+++l s++a +q + + e +++  ++v++
  EHU00559.1 273 DMRQGLRTIVAEINTIAASVAEGAREMQHTNDQVSEH----------YKVQNSSFSHISQRLHRVSEEVENSTLFSQQAAQQaHVADELMQQCASQVDE 361
                 5555555555555555555555555555555555544..........2222223333333333333322222222222211102222333333444444 PP

        Fez1 140 lraeL 144
                 ++ ++
  EHU00559.1 362 MEVQM 366
                 43333 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.007
        Fez1  35 alkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelr 100
                 a+ +ql+el+++ +++ ++++ + +++   ++el++ e   +r+  +a++l+ ++++l e  +++r
  EHU00559.1 466 AVVTQLKELEENATAQSRRVSGIAAEVVALDKELHTNEGLTARQVRTADTLQHQASRLAESAQQFR 531
                 556788899988888899999999999888999998888888999999999998888888888877 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.1   1.3e+03      61      85 ..     185     209 ..     178     213 .. 0.75
   2 ?    3.1   3.1     0.094   1.1e+02      28      77 ..     317     369 ..     264     381 .. 0.56
   3 ?    7.4   0.2    0.0044       5.3      26      85 ..     409     469 ..     390     477 .. 0.75
   4 ?    2.8   2.1      0.12   1.4e+02      27      86 ..     463     529 ..     459     531 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
      DUF948  61 edvneklekvdplteavadlgesvs 85 
                  + n++l +v++lt +  ++++++s
  EHU00559.1 185 TQANKQLSAVNNLTLETLTTSRNLS 209
                 4678888888888888888888776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.094
      DUF948  28 ldeaaatieelekqvdp...ilkevedllakvnelledvneklekvdplteav 77 
                 +++++++++ + ++v++    ++++++  + + el++++ +++++++  + ++
  EHU00559.1 317 FSHISQRLHRVSEEVENstlFSQQAAQQAHVADELMQQCASQVDEMEVQMRHI 369
                 34444444444444443111335555555555556666666666666555555 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0044
      DUF948  26 ktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad.lgesvs 85 
                 + ++ +a+ + +l ++ ++  +++++l+++++   ++  +k++++++l++++ + +++ v 
  EHU00559.1 409 RSFSVVAKEMGTLSNKSGESAQQINGLVNNTQLHISEGFNKVKSLEALFYQISQsVSAVVT 469
                 5667788888889999999999999999999996666666777777777766431555555 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.12
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvne.......klekvdplteavadlgesvse 86 
                  ++++ ++++ele+++++ ++ v ++ a+v +l ++++        ++ + d+l +++  l+es ++
  EHU00559.1 463 SVSAVVTQLKELEENATAQSRRVSGIAAEVVALDKELHTnegltarQVRTADTLQHQASRLAESAQQ 529
                 4555555555555444444444444444444443333333344445888888888888888888776 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         6   7.1e+03       8      53 ..     187     197 ..     179     214 .. 0.47
   2 ?    7.8   3.8    0.0026       3.1       4      58 ..     281     335 ..     278     383 .. 0.67
   3 ?    1.4   0.1      0.25   2.9e+02       4      42 ..     344     382 ..     341     404 .. 0.83
   4 ?    5.9   1.2    0.0099        12      31      94 ..     427     487 ..     414     494 .. 0.54
   5 ?    7.1   2.3    0.0042         5       7      72 ..     459     524 ..     454     530 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   8 anetakevleqlaplsqnlentkeklseinrsveetnekvkdanka 53 
                 an+++++v +                                    
  EHU00559.1 187 ANKQLSAVNN-----------------------------------L 197
                 3333333322...................................2 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   4 laaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdAr 58 
                 ++ae+n +a++v e   +++   ++++e ++  n+s  ++ + ++  ++ ++   
  EHU00559.1 281 IVAEINTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVENST 335
                 6788888888888888888888888888888888888888888887666665443 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.25
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   4 laaeanetakevleqlaplsqnlentkeklseinrsvee 42 
                  a+ a+e +++  +q+ ++++++ ++ ++  ei++ ve 
  EHU00559.1 344 QAHVADELMQQCASQVDEMEVQMRHIVDSSGEIAGIVEL 382
                 56779999999*************999999999988765 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0099
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHH CS
  Laminin_II  31 eklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnise 94 
                 e++++in+ v++t+ ++++  + +++ +    ++ + +  ++ +lkel++   a    s+ +s 
  EHU00559.1 427 ESAQQINGLVNNTQLHISEGFNKVKSLEALFYQISQSVSAVVTQLKELEENATA---QSRRVSG 487
                 445555555555555555555555555555555555566666666666555555...4555554 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.0042
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTG CS
  Laminin_II   7 eanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLl 72 
                 ++++++++v  ql++l++n    +  +s+i+++v   +++++     ++   r   +L+++a +L 
  EHU00559.1 459 QISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVALDKELHTNEGLTARQVRTADTLQHQASRLA 524
                 6899********************************999999888777777777888888888776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.1    0.0084        10      38      98 ..     273     333 ..     263     344 .. 0.54
   2 ?    4.6   4.3     0.027        32      59     110 ..     315     366 ..     297     388 .. 0.65
   3 ?    4.7   1.0     0.025        29      56     115 ..     435     497 ..     410     529 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0084
     DUF1664  38 slsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlse 98 
                  +++ + ++  +++++ +s+a+  r++++  d+v ++ + q+   ++i++ +++v+e++++
  EHU00559.1 273 DMRQGLRTIVAEINTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVEN 333
                 3444445555555555555555555555555555555555555555555555555555544 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.027
     DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeav 110
                 +   h+s+r++rv +++++++  s++ +++ + + e +++  ++v++++  +
  EHU00559.1 315 SSFSHISQRLHRVSEEVENSTLFSQQAAQQAHVADELMQQCASQVDEMEVQM 366
                 3445777888888888887777777777777777777777777777665444 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.025
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevt...evredlseigedvesvkeavegles 115
                  +++t+ h+s+  ++v +      +is+++++ vt   e++e+ ++ ++ v+ + + v  l++
  EHU00559.1 435 LVNNTQLHISEGFNKVKSLEALFYQISQSVSAVVTqlkELEENATAQSRRVSGIAAEVVALDK 497
                 444444454444444433222222333332222220002222333333333333333333333 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   3.2      0.28   3.3e+02      26      79 ..     307     363 ..     271     392 .. 0.53
   2 ?   10.3   0.6   0.00065      0.77      24      79 ..     431     486 ..     411     525 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.28
                 HH.B-........BHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  26 ne.fkds......nkqrLkkieakvd...klgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                  e +k +        qrL+++ ++v+             q+  +q +  +el ++   q +e++
  EHU00559.1 307 SEhYKVQnssfshISQRLHRVSEEVEnstL-------FSQQAAQQAHVADELMQQCASQVDEME 363
                 443332222222234555555555543321.......122222222222333333333333222 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00065
                 HHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  24 qlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                 q+n   ++++ ++ +  +kv++l+  + ++ q v++   ++kel+++  aq++++ 
  EHU00559.1 431 QINGLVNNTQLHISEGFNKVKSLEALFYQISQSVSAVVTQLKELEENATAQSRRVS 486
                 55666666666666667999999999999*****************9999999877 PP

>> PP_kinase_N  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00059       0.7      36      86 ..     157     204 ..     147     214 .. 0.76
   2 ?    1.4   2.0      0.33     4e+02      55      82 ..     306     333 ..     278     372 .. 0.50
   3 ?   -1.3   0.2       2.3   2.7e+03      79      79 ..     477     477 ..     423     529 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00059
                  HHHHHHHHHHHCCHHHHH.HTT-..-----------HHHHHHHHHHHHHHH CS
  PP_kinase_N  36 fssNlDEFfmvRvaslkrqleakvekksedgltpeeqlkaiseeveelvee 86 
                   ++N+D Ffmv + + ++q+++   ++     ++++ql+a+++ + e +++
   EHU00559.1 157 EANNIDAFFMVPMQAYQQQFNSAWFNE---ITQANKQLSAVNNLTLETLTT 204
                  589***************999983333...456677888887766665554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.33
                  HTT-..-----------HHHHHHHHHHH CS
  PP_kinase_N  55 leakvekksedgltpeeqlkaiseevee 82 
                  ++++++ ++++ ++ ++ l+++seeve+
   EHU00559.1 306 VSEHYKVQNSSFSHISQRLHRVSEEVEN 333
                  2222222222222223333333333332 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.3
                  H CS
  PP_kinase_N  79 e 79 
                  +
   EHU00559.1 477 N 477
                  1 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.69   8.2e+02      30      77 ..     112     160 ..     101     208 .. 0.58
   2 ?    6.7   1.5    0.0056       6.7      44     125 ..     263     344 ..     258     367 .. 0.80
   3 ?    6.7   0.5    0.0056       6.7      43     115 ..     451     523 ..     405     532 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.69
                 HHHHHHHHH--S-SSHHHHTTS.GGGGHHHHHHHHHHHHT--SCHHHHH CS
      DUF489  30 letllkslletdpestedvygg.lanlklGletlleqlekekkkkdael 77 
                 l+ + ks l+  ++ +++ +   + +l++G+ +l + le++ k  +a+ 
  EHU00559.1 112 LAETAKSSLVHAEQLFAQYHAVpKGELEQGFMMLTQGLEEQLKGLEANN 160
                 5556666665555444444444788999999999999998887544432 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0056
                 SHHHHTTSGGGGHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHHHHH CS
      DUF489  44 stedvygglanlklGletlleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehfdllhenvlan 125
                 +t+ +++ +a++++Gl+t+++ +++ + +       +  +  +++++ + +++ ++++++r++++++++e+ +l +++  ++
  EHU00559.1 263 ETAGLFNAVADMRQGLRTIVAEINTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVENSTLFSQQAAQQ 344
                 68889********************99965555666667777888888889999**************99988888776654 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0056
                 SSHHHHTTS.GGGGHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS CS
      DUF489  43 estedvygg.lanlklGletlleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehf 115
                 +s+e+++ + +++++  +++l+  le+++++++ ++   a++++al ++L+ n+ ++a+  +  +++++q++  
  EHU00559.1 451 KSLEALFYQiSQSVSAVVTQLK-ELEENATAQSRRVSGIAAEVVALDKELHTNEGLTARQVRTADTLQHQASRL 523
                 6677777774455555444444.455555567889999******************999999999999998765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.5    0.0079       9.4     138     230 ..     286     377 ..     277     407 .. 0.63
   2 ?    5.4   2.1    0.0059         7     177     271 ..     419     513 ..     407     530 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0079
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqle 230
                 +++  ++ e   ++++ +++++++ +  ++    ++++  +++ee+e+   ++++ ++ +     el ++ a++  e+e +++ + +   +++
  EHU00559.1 286 NTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVENSTLFSQQAAQ-QAHVADELMQQCASQVDEMEVQMRHIVDSSGEIA 377
                 4566677777778888888888888888888888888888888888777665555333.2222334444555555555555555555555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0059
        Spc7 177 aeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrl 271
                  +l+++  +  ++ + l + ++  + e  +++++l+a   + ++ ++ + +ql+elee+ ++ + + s + +e+ + ++ l+ ++g ++ +v++ 
  EHU00559.1 419 GTLSNKSGESAQQINGLVNNTQLHISEGFNKVKSLEALFYQISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVALDKELHTNEGLTARQVRTA 513
                 45555555555556666666666677777777777777778888888888888888888888888888888888888888888888888888753 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       8.6     1e+04      31      55 ..     178     202 ..     169     209 .. 0.57
   2 ?    9.0   0.4    0.0012       1.5      30     119 ..     275     363 ..     253     386 .. 0.71
   3 ?    4.7   1.0     0.027        33      80     128 ..     448     495 ..     413     531 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8.6
                 CCCCHHHCCCCCCCCCCCCHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeae 55 
                 +   +++++ +++l+ ++n t e+ 
  EHU00559.1 178 SAWFNEITQANKQLSAVNNLTLETL 202
                 4444667777777777777666555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiq 119
                 ++ +++ +++++   +++++  +e++++  ++++ ++ +++s ++ ++ ++++s+e+e + + + ++  +q +   +L +   s++ +++
  EHU00559.1 275 RQGLRTIVAEINTIAASVAEGAREMQHTNDQVSEHYKVQNSSFSHISQRLHRVSEEVE-NSTLFSQQAAQQAHVADELMQQCASQVDEME 363
                 4444445555555555555555566666666666666666666656888888899998.7777888888888888888888888777775 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.027
                 HHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  80 kksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128
                 +k+ k+le    ++ ++++a ++++++L ++  +++++++ +  ++ ++
  EHU00559.1 448 NKV-KSLEALFYQISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVAL 495
                 332.235555556666666666666666666666666666555555444 PP

>> NifQ  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.8      0.13   1.6e+02      16      84 ..     298     370 ..     282     394 .. 0.64
   2 ?    6.7   0.5    0.0071       8.5       8     118 ..     413     524 ..     407     529 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.13
        NifQ  16 laealGlsaaelaeLlerlfpgaeaal...eaaalaeeleeeraeeeedlralLlehaseeaee.erwlaaiv 84 
                  ++++  + +e  ++ ++ f++++++l   +++ ++++l +++a++++++++ L+++++++ +e e  + +iv
  EHU00559.1 298 EMQHTNDQVSEHYKVQNSSFSHISQRLhrvSEEVENSTLFSQQAAQQAHVADELMQQCASQVDEmEVQMRHIV 370
                 4444444555555566666666666554434444555556667777778887777777766665377888887 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0071
        NifQ   8 laleeaealaealGlsaaelaeLlerlfpgaeaaleaaalaeeleeeraeeeedlralLlehaseeaeeerwlaaivarrsleedhLWqdLgLasrae. 105
                 + ++e ++l+++ G sa++++ L++++  ++++  ++ ++ e+l  + ++  + +++ L e ++++++++r +  i a+    ++ L  + gL++r+  
  EHU00559.1 413 VVAKEMGTLSNKSGESAQQINGLVNNTQLHISEGFNKVKSLEALFYQISQSVSAVVTQLKELEENATAQSRRVSGIAAEVVALDKELHTNEGLTARQVr 511
                 6678888999**********************999999999999999**********************************************999841 PP

        NifQ 106 LsallerhFpeLa 118
                   + l+++ ++La
  EHU00559.1 512 TADTLQHQASRLA 524
                 3445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1919  (0.107033); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 3617.93
//
Query:       EHU00560.1  [L=83]
Description: hypothetical protein CKS_2553 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-05   22.8   0.1    0.00013   21.8   0.1    1.4  1  Arc       Arc-like DNA binding domain
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.038   13.9   0.0    1.8  2  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> Arc  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.4e-08   0.00013      15      46 ..      15      46 ..      12      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHCT CS
         Arc 15 vrekvkevAeengRSmNSEilqrveeslkkeg 46
                ++e +k+ A en  Sm  Ei+qr++ sl  ++
  EHU00560.1 15 LKEHIKQLALENQVSMSQEIVQRLQASLEAPS 46
                579*************************9887 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.2e-06     0.038       2      27 ..       7      32 ..       6      38 .. 0.95
   2 ?   -2.3   0.0      0.57   5.1e+03       8      11 ..      65      68 ..      61      77 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.2e-06
                EEEEEEHHHHHHHHHHHHHHTSSHHH CS
       RHH_1  2 vsirldeellerLdelarrrgrSrSe 27
                ++i++d  l+e + +la + ++S+S+
  EHU00560.1  7 LTIKIDPALKEHIKQLALENQVSMSQ 32
                8***********************97 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.57
                HHHH CS
       RHH_1  8 eell 11
                ++++
  EHU00560.1 65 SSEI 68
                3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1224  (0.0682693); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 697.54
//
Query:       EHU00561.1  [L=234]
Description: putative phosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   41.2   0.0    3.3e-10   40.2   0.0    1.5  1  HD        HD domain


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.9e-14   3.3e-10       3     120 ..      28     130 ..      26     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.9e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHTTCCHHHHHH CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld.....ledvaklirehheswegkk 96 
                  H ++V+  a+r+       +d+ ++l+a+++HD+++ p ++  e+++         ++++a+ +++++  +++d     +  v +++ +h++s  ++ 
  EHU00561.1  28 AHLRRVWMSAQRIMAGTS--ADPLIVLTACYFHDVVNLPKNH-PERNK--------ASTYAASETQRILQQDFTDfpaelIGGVMHAVQAHSFSAAIT- 114
                 7****************9..*******************998.33332........3566666666666666555667799999***********988. PP

                 HHHHHHCCTSCHHHHHHHHHHHHH CS
          HD  97 rprglaerqlslearivklaDrla 120
                         + ++ea+iv++aDrl+
  EHU00561.1 115 --------PETPEAKIVQDADRLE 130
                 ........**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 2099.15
//
Query:       EHU00562.1  [L=227]
Description: hypothetical protein CKS_2551 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1815.47
//
Query:       EHU00563.1  [L=255]
Description: DgsA-binding anti-repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-64  215.6   0.0    9.5e-64  215.3   0.0    1.0  1  Peptidase_M90  Glucose-regulated metallo-peptidase M90


Domain annotation for each model (and alignments):
>> Peptidase_M90  Glucose-regulated metallo-peptidase M90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.0   5.3e-68   9.5e-64      26     245 .]      24     243 ..       4     243 .. 0.93

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 5.3e-68
  Peptidase_M90  26 rlpllaalseeekarLrelaqlflaekefegakgleltdemrlliAaqAcllilnlgldyYdglkeilvYpdefvarrevedeagvvheeeeellG 121
                    + p+++ l+++e++ L+++aq fl++k++  ++g++l+   ++ iA+  cl++l+lgld+ dg++e+l+Yp+ f+++r  +de+g+vh+  ++ +G
     EHU00563.1  24 TQPIFTLLNHDERQSLQAMAQHFLQQKKLVPLEGCQLDTLRTVRIALLFCLPVLKLGLDWLDGFHEVLIYPEPFNVDRLWQDEHGLVHHAPAVHAG 119
                    3589999***************************************************************************************** PP

  Peptidase_M90 122 eawergpviLswedveaggeneedkenvviHEfaHkLDme.dgeadGvPplaerasaeeWaevlseeyeklrerve..akeeslidpYgatnpaEF 214
                    ++w++gpv+L w d++ +++ ++  +n+viHE+aHkLD + +g + GvP + +  ++++W++ l+++++ ++++ve   +++  idpY+a++paE+
     EHU00563.1 120 QSWTQGPVVLNWLDIQDSFDLSG--YNLVIHEVAHKLDARgSGYTSGVPMM-PLREVAQWEKDLRSAMAGIEHEVEsvGEQAASIDPYAASDPAEC 212
                    ******************99999..*************97368999***98.77899******************96544679************* PP

  Peptidase_M90 215 FAVasEaFFekpeklkeehpelyelLaafyr 245
                    FAV+sE+FF++p+ l+e++p++y++L++fy+
     EHU00563.1 213 FAVLSEYFFTAPALLAERFPAMYRHLQHFYQ 243
                    ******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2046.56
//
Query:       EHU00564.1  [L=288]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-30  105.0   2.2    1.7e-28   99.9   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    6.6e-15   55.2   1.5    1.5e-14   54.1   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    4.6e-12   46.5   9.0    9.8e-12   45.5   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0057   16.4   6.2     0.0083   15.9   6.2    1.1  1  FAM184           Family with sequence similarity 184, A and B
     0.0093   16.3   5.3      0.041   14.2   0.6    2.5  2  Csm1_N           Csm1 N-terminal domain
     0.0093   15.6   0.6      0.011   15.3   0.6    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
  ------ inclusion threshold ------
      0.011   15.0   1.7      0.017   14.3   1.7    1.2  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.017   13.7   6.9      0.021   13.4   6.9    1.1  1  FUSC             Fusaric acid resistance protein family
      0.023   15.0   3.1      0.039   14.2   3.1    1.3  1  Troponin         Troponin
      0.031   14.0   2.9       0.15   11.8   0.5    2.1  2  LXG              LXG domain of WXG superfamily
      0.038   13.2   1.2      0.054   12.7   1.2    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.079   12.8  11.1       0.11   12.3  11.1    1.1  1  ERM              Ezrin/radixin/moesin family
       0.11   12.7   1.7        0.5   10.5   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
       0.15   12.1  10.9       0.24   11.5  10.9    1.2  1  DHR10            Designed helical repeat protein 10 domain
       0.19   11.6   2.2       0.36   10.7   2.2    1.4  1  RD3              RD3 protein
       0.45    9.7   3.1       0.64    9.2   3.1    1.1  1  TMPIT            TMPIT-like protein
       0.52   10.1   3.8        0.8    9.5   3.8    1.2  1  PCRF             PCRF domain
       0.62    9.8   3.5        3.3    7.5   3.7    2.0  2  USP8_interact    USP8 interacting
       0.92    9.0   7.8          2    7.9   7.8    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.2    9.3   8.3        1.6    8.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.7    9.0   8.0        2.6    8.4   8.0    1.2  1  OmpH             Outer membrane protein (OmpH-like)
        2.6    8.5   8.1       0.24   11.8   3.1    1.8  2  HalX             HalX domain
        3.5    8.3   9.4        3.9    8.2   1.3    2.8  2  SlyX             SlyX
        3.8    8.1   9.9        4.6    7.8   0.5    2.6  2  MerR-DNA-bind    MerR, DNA binding
        4.4    7.4   8.5        4.2    7.4   0.6    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.1     0.076        54     167     215 ..      34      83 ..      19     121 .. 0.50
   2 !   99.9   0.0   2.3e-31   1.7e-28       2     100 ..     187     285 ..     186     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.076
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU00564.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   57777777778888888888863344442...333333333333333332111 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 2.3e-31
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00564.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789*********************************************************************************************9 PP

  DDE_Tnp_IS66  99 kr 100
                   +r
    EHU00564.1 284 DR 285
                   94 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   1.5   2.1e-17   1.5e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.1e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00564.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   9.0   1.4e-14   9.8e-12       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.4e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00564.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   6.2   1.2e-05    0.0083     114     196 ..      10      96 ..       7     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00564.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888887777765557777889**************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.6   5.7e-05     0.041      22      56 ..      23      57 ..      11      71 .. 0.81
   2 ?    3.9   0.5     0.097        69      33      53 ..      71      91 ..      67      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00564.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.097
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00564.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   1.5e-05     0.011     144     230 ..      10     106 ..       3     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk......... 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++         
    EHU00564.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQHdpalpqplr 105
                   33444555555555666666677789999999999988886655439999**************************99944.333333233333333 PP

  Exonuc_VII_L 230 e 230
                   +
    EHU00564.1 106 Q 106
                   0 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.7   2.4e-05     0.017      47     106 ..      34      90 ..      24      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00564.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   6.9     3e-05     0.021     213     294 ..       4      89 ..       1     124 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU00564.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 44889***********************************999**********999996667888888888888888888877766 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.1   5.5e-05     0.039      46     120 ..       9      97 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU00564.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5    0.0002      0.15     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.8   0.2      0.12        84      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00564.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00564.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877666 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   7.5e-05     0.054      24      76 ..      37      91 ..      13     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.5e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00564.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                579***************55553233356667777888889999*******9986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  11.1   0.00015      0.11      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00564.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66889999999**********************************999999887335577789*******************9865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00069       0.5      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?    0.5   0.1      0.92   6.6e+02       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00564.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.92
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00564.1 167 ACCSCDHI 174
                  35555555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  10.9   0.00034      0.24      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00564.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   0.00051      0.36      45     127 ..      16      95 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00051
         RD3  45 keeeerkaetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevlaenevevkeivelfksvlkevleer 127
                  +e++   ++ ++Y++l s+        ase ++L  l ak++  + gk  +++re++a +  e++e +++++  + evl e+
  EHU00564.1  16 LQEQQTTIRKMAEYNRLLSQR---VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQ 95 
                 566777788889******965...455799*************************************9999999999988776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.1   0.00089      0.64      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00089
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00564.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445555555555555555555777777665 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.8    0.0011       0.8      19      96 ..      18      96 ..       6     100 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
                TTGGGSSSTTHHHHHTHHHHHHH.HHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSS CS
        PCRF 19 edqekakklskelaeleeiveal.eeleealedleeakell..eedeelaelaeeeleelekeleeleeelkklLlpkden 96
                e+q++++k+++  + l++ v+a+ +e++++++ +++++++   ++ e+l+e    +++e+e+++++l+ee+ ++L   +++
  EHU00564.1 18 EQQTTIRKMAEYNRLLSQRVAAYaSEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLG--EQH 96
                33334444333333344444433144555555555555565334778999999999******************98..333 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.7    0.0046       3.3       2      49 ..      12      61 ..      11      93 .. 0.79
   2 ?   -1.2   0.0       2.1   1.5e+03      61      84 ..     212     236 ..     194     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0046
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHU00564.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgK 61
                   9***************************************9998766552 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
  USP8_interact  61 devlr.WveslklarvtrWGglist 84 
                    +e+ +  + +l++a++ rW g +s 
     EHU00564.1 212 SEIYHrQGVELSRATLGRWSGAVSE 236
                    4444325678999999999999985 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.8    0.0028         2      70     152 ..      13      97 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0028
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00564.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55667777777777777777777788999999999999999998874477888899************************98766 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0023       1.6      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    4.5   1.1     0.052        37      22      37 ..      74      89 ..      73      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0023
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00564.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.052
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00564.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.0    0.0036       2.6       9      83 ..      14      92 ..      10     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0036
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU00564.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                56777788888899999999*********************966655.23466666666667777777777444444444 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       9.3   6.7e+03      43      57 ..      11      25 ..       7      33 .. 0.49
   2 ?   11.8   3.1   0.00033      0.24       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9.3
        HalX 43 rleelraqldetlde 57
                rl +l ++  +t+  
  EHU00564.1 11 RLRALLQEQQTTIRK 25
                444444444444443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00033
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00564.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.3    0.0054       3.9      22      53 ..      12      43 ..       7      53 .. 0.87
   2 ?    3.3   2.1      0.18   1.3e+02      34      57 ..      68      91 ..      42     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0054
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00564.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                777899********************887665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.18
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00564.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.4      0.12        88      21      64 ..      13      56 ..      10      57 .. 0.84
   2 ?    7.8   0.5    0.0064       4.6      32      60 ..      61      89 ..      58     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.12
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHU00564.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   778866666777777888***********************997 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0064
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHU00564.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   5788999*****************98655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6    0.0059       4.2      23      69 ..      11      57 ..       7      62 .. 0.87
   2 ?    3.6   2.1     0.092        66      45      70 ..      63      88 ..      58      92 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0059
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHU00564.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                5666678899*************************999999999875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.092
  TMF_DNA_bd 45 lekeikelkkkleklekeleeleerl 70
                +ek  +++ +++++ e+ ++ l+e++
  EHU00564.1 63 SEKLREKTARQVREAEERISALQEEM 88
                55666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1484  (0.0827709); expected 358.6 (0.02)
Passed bias filter:                      943  (0.0525964); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 2164.46
//
Query:       EHU00565.1  [L=50]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-12   44.9   0.0    9.4e-12   44.7   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   5.2e-16   9.4e-12      59     100 ..       1      41 [.       1      42 [. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.2e-16
   TnpB_IS66  59 llykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 +++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00565.1   1 MFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 41 
                 689***********7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 399.06
//
Query:       EHU00566.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   37.1   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.072   13.2   0.0        0.1   12.7   0.0    1.3  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00566.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00566.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00566.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00566.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 897.95
//
Query:       EHU00567.1  [L=215]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-70  236.5  11.8      2e-70  236.4  11.8    1.0  1  MarC      MarC family integral membrane protein
  ------ inclusion threshold ------
        6.9    6.8  12.4        4.6    7.4   1.4    2.6  3  YrvL      Regulatory protein YrvL


Domain annotation for each model (and alignments):
>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4  11.8   2.2e-74     2e-70       3     203 .]      10     210 ..       8     210 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 2.2e-74
        MarC   3 aiikafvsLlaiinplgnvpvflslleevskeerkrialkasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkakqkkekkkkse 101
                  +ik+fv L+a++np+g++pvf+s+++++  +er++++l+a++ +++il+ +l++G+ il++fgisid+++iaGgil+++ia++m+++k  ++k++k+e
  EHU00567.1  10 GYIKFFVGLFALVNPIGIIPVFISMTRYQGVAERNKTNLTANLAVAIILWTSLFLGDAILHVFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQE 108
                 689************************************************************************************************ PP

        MarC 102 eeeseekdeiavvPLAlPliaGPgaittvlvlaseassivekvavvlaillaalitllilllsslilrllgktginaleRlmGllLvalavqlivdGik 200
                 + e++ +++i vvPLAlPl+aGPgai++++v++++++s+ + + + +a++++a+ ++l+++ +++++r+lg+tgin+++R+mGllL+al+++++v+Gik
  EHU00567.1 109 KTETAIRESIGVVPLALPLMAGPGAISSTIVWSTRYHSWLNLLGFTVAVAIFAFSCWLLFRAAPIMVRVLGQTGINVITRIMGLLLMALGIEFVVTGIK 207
                 *************************************************************************************************** PP

        MarC 201 eil 203
                  i+
  EHU00567.1 208 AIF 210
                 986 PP

>> YrvL  Regulatory protein YrvL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.78     7e+03      44      57 ..      15      27 ..      10      41 .. 0.52
   2 ?    7.2   0.5   0.00056       5.1       8      38 ..      49      79 ..      42      96 .. 0.86
   3 ?    7.4   1.4   0.00051       4.6      34      98 ..     143     204 ..     139     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.78
        YrvL 44 Ffliflvlglllel 57
                F+++f ++  ++++
  EHU00567.1 15 FVGLFALVN-PIGI 27
                333333332.4444 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00056
        YrvL  8 illlvliivfaifflvvvglfkllGieYeSv 38
                 + l+++i++ + ++++ ++++++Gi+ +S 
  EHU00567.1 49 TANLAVAIILWTSLFLGDAILHVFGISIDSF 79
                5668999*******************98886 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00051
        YrvL  34 eYeSvgslllFfliflvlglllellakillkvllelkklskslakllalildltftllaihivDe 98 
                 +Y S+  ll F +++ +  + + ll+++ + +++    l ++ +++++ i+ l++  l+i +v +
  EHU00567.1 143 RYHSWLNLLGFTVAVAIFAFSCWLLFRAAPIMVR---VLGQTGINVITRIMGLLLMALGIEFVVT 204
                 8************************999999987...7888888888888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1675.40
//
Query:       EHU00568.1  [L=894]
Description: alcohol/acetaldehyde-CoA dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-114  383.1   0.7   1.6e-114  382.5   0.7    1.3  1  Fe-ADH         Iron-containing alcohol dehydrogenase
    1.6e-27   96.2   3.8    2.6e-25   88.9   4.3    2.1  2  Aldedh         Aldehyde dehydrogenase family
      6e-19   68.7   0.3    4.4e-08   33.1   0.6    2.5  2  Fe-ADH_2       Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
       0.24   11.2   1.5        1.2    9.0   0.0    2.9  4  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.5   0.7  3.6e-118  1.6e-114       1     361 [.     457     851 ..     457     854 .. 0.94

  Alignments for each domain:
  == domain 1  score: 382.5 bits;  conditional E-value: 3.6e-118
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P+ i+f +g+l    e+++  gakra++vtd +++ ++g++d+v++ l+++gie +vf +ve +ptl+ v+++a++++++++dv+ia+GGGs++D+AK+
  EHU00568.1 457 PKSIYFRRGSLPVALEEVATDGAKRAFVVTDHFLF-NNGYADQVTRVLKSHGIETEVFFEVEADPTLSIVRKGAEQMHSFKPDVIIALGGGSPMDAAKI 554
                 889******************************99.*************************************************************** PP

                 HHHHTT.............................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHH CS
      Fe-ADH 100 ialllanpe..vedyl........gegkakkkka.lpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglD 187
                 +++++++pe  +e++         ++ k +k    ++++ai Tt+GtGsevtp+av+td+++g+k++++d+ l+Pd+aivD +l++++P+++ a++glD
  EHU00568.1 555 MWVMYEHPEthFEELAlrfmdirkRIYKFPKMGVkARMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPRSLCAFGGLD 653
                 *******955955555555576565555433333599************************************************************** PP

                 HHHHHHHHHHHHT---TTSSB--HHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH... CS
      Fe-ADH 188 alahalEayvskkanplsdalaleairliaknleravadge.dleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfn 285
                 a++halEayvs  an++sd+ al+a++l+ +nl+ ++a+g+ +++are++++a+t+ag+af+na lg++H++ah+lg+ f+iphglan++l   v+r+n
  EHU00568.1 654 AVTHALEAYVSVLANEYSDGQALQALKLLKENLPASYAEGAkNPAARERVHNAATIAGIAFANAFLGVCHSMAHKLGSEFHIPHGLANSLLISNVIRYN 752
                 ***************************************977********************************************************* PP

                 ......................HHHHHHT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HH....HHHHHHHT-TSGGGGSSS---H CS
      Fe-ADH 286 a...............eaaperlaqlaralgge....sdeeaaeeliealrellkelglptsLselgvdeedl....dklaeaalkdrslannprelta 361
                 a               ++a++r+a++a+ lg +     ++++ e+l+ +l+e+  elg+p s++e gv+e+d+    dklae+a++d+++++npr +  
  EHU00568.1 753 AndnptkqtafsqydrPQARRRYAEIADHLGLTatgdRTAQKIEKLLVWLDEIKTELGIPASIREAGVQEADFlakvDKLAEDAFDDQCTGANPRYPLI 851
                 ***************99999****************9999******************************8777777******************8765 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   4.3   5.9e-29   2.6e-25      27     302 ..       5     279 ..       1     311 [. 0.89
   2 !    4.8   0.0    0.0019       8.5     364     427 ..     330     400 ..     318     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 5.9e-29
                 -HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEE CS
      Aldedh  27 taedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaeklegevlpssegklalvrre 125
                 + ++++a v++ k+a++a+a+ + ++  +i+r+aa + ++ +  la++ ++e G  + e +   +  ++ + y a   +k  g vl+++++  +++  e
  EHU00568.1   5 NVAELNALVERVKKAQQAFASFSQQQVDAIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDDKTCG-VLETDDTFGTITIAE 102
                 678999***************************************************99998666656555555555555554.778889********* PP

                 E-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHH CS
      Aldedh 126 PlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrk 220
                 P+G +  I+P   P ++a+ k+++ l + N +++ P +++   + + a ++ +a    g Pk+++  +  +  e++++l++hp+++++  tG+  + + 
  EHU00568.1 103 PIGLICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKDATNKAADIVLQAaiaaGAPKDIIGWIDAPSVELSNQLMHHPDINLILATGGPGMVKA 201
                 ************************************9887777777666666655555**********************************9877666 PP

                 HHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TT CS
      Aldedh 221 iakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpl 302
                  ++    + k+ +    G+ p+++ e aD+++av++i+++ ++ +G +C + + ++v + iyd+++++++ +   l +g++l
  EHU00568.1 202 AYS----SGKPAIGVGAGNTPVVIDETADVKRAVASILMSKTFDNGVICASEQSVIVVDAIYDAVRARFASHGGYLLQGHEL 279
                 555....4689999999****************************************************9887666666665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0019
                 HHHHS---SSEEEEEEESSHHHHHHHHHSS....SEESEEEEE-SB...HHHHHHHHHHS-SSEEEESSSS CS
      Aldedh 364 riaqeEiFGPVlsvikfkdeeeaieiaNdt....eyGLaagvftkd...leraervaerleaGnvyiNdst 427
                 + + +E   P l+++++kd e+a+++a +       G +++++t++    +r++++ +++++  + iN+++
  EHU00568.1 330 EPFAHEKLSPTLAMYRAKDYEDAVSKAEKLvamgGIGHTSCLYTDQdnqSARVHYFGDKMKTARILINTPA 400
                 445677789****************999863223589*******761115689999************984 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.5e-11   6.9e-08      10      94 ..     470     555 ..     461     562 .. 0.88
   2 !   33.1   0.6   9.9e-12   4.4e-08      99     246 ..     589     738 ..     580     740 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.5e-11
    Fe-ADH_2  10 lgellkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyv 94 
                   e ++  ++k++++v+d+   +  ++++v++ lk++gi++ev+ eve++++l+ v+k +e++++ + d+++a+GgG+ +D+ak++
  EHU00568.1 470 ALEEVATDGAKRAFVVTDHFLFNNgYADQVTRVLKSHGIETEVFFEVEADPTLSIVRKGAEQMHSFKPDVIIALGGGSPMDAAKIM 555
                 55556777899********9655549****************999***************************************97 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 9.9e-12
    Fe-ADH_2  99 nvpyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaae 194
                 + ++v++ T+    +   p+a ++ d  g+k  +   a +P   i+D +++ + Pr+l a G  D++      + + lane+s+  a+++ + ++e++ 
  EHU00568.1 589 KARMVAITTTSGTGSEVTPFAVVTDDatGQKYPLaDYALTPDMAIVDANLVMDMPRSLCAFGGLDAVTHALEAYVSVLANEYSDGQALQALKLLKENLP 687
                 6789999999988888999999999988999999888999999******************************************************99 PP

    Fe-ADH_2 195 klved.kketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                 +  ++  k+  a e++ +a +++gi+++++  G +H ++H l  ++  +  HG
  EHU00568.1 688 ASYAEgAKNPAARERVHNAATIAGIAFANAFLGVCHSMAHKLGSEF--HIPHG 738
                 8877516679999*******************************99..89998 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.42   1.9e+03      14      24 ..      43      53 ..      39      55 .. 0.86
   2 ?   -3.2   0.0       1.7   7.8e+03      21      33 ..     302     314 ..     300     314 .. 0.81
   3 ?   -3.7   0.0       2.6   1.2e+04       9      22 ..     679     692 ..     678     692 .. 0.89
   4 ?    9.0   0.0   0.00028       1.2      16      32 ..     771     787 ..     765     788 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.42
  HTH_AsnC-type 14 edaRisyaeLA 24
                   +daRi+ a++A
     EHU00568.1 43 ADARIPLAKMA 53
                   79*****9988 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
  HTH_AsnC-type  21 aeLAervGlSest 33 
                     ++Ae+ G++ +t
     EHU00568.1 302 VKIAEMAGITVPT 314
                    689*****99876 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.6
  HTH_AsnC-type   9 LeaLqedaRisyae 22 
                    L++L e+  +syae
     EHU00568.1 679 LKLLKENLPASYAE 692
                    78999999999997 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00028
  HTH_AsnC-type  16 aRisyaeLAervGlSes 32 
                    aR+ yae+A+ +Gl+++
     EHU00568.1 771 ARRRYAEIADHLGLTAT 787
                    9*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6118.09
//
Query:       EHU00569.1  [L=206]
Description: thymidine kinase/deoxyuridine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-62  208.5   0.0    7.6e-62  208.3   0.0    1.0  1  TK        Thymidine kinase
     0.0098   15.4   0.0      0.016   14.7   0.0    1.3  1  KdpD      Osmosensitive K+ channel His kinase sensor domain
  ------ inclusion threshold ------
      0.016   15.5   0.1      0.031   14.6   0.1    1.4  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.3   0.0   1.3e-65   7.6e-62       1     177 []       2     186 ..       2     186 .. 0.97

  Alignments for each domain:
  == domain 1  score: 208.3 bits;  conditional E-value: 1.3e-65
          TK   1 gsielilgpmfaGKsteLlrrvkryqlaekkvvvikaakdnRysegkvvthdgisleak..ksktssleeikeeleeedvdvvlvDEaqFfe.qdivel 96 
                 +++++++++m+aGKst+Ll+++++yq++ ++++v++a++dnR+++gkv++++g+s  a+  + +++   ei +e++++ v++vlvDE+qF++ +++  l
  EHU00569.1   2 AQLYFYYSAMNAGKSTALLQSSYNYQERGMRTLVYTAEIDNRFGTGKVSSRIGLSSPAVlyNAESQLDVEIAQEHARQPVHCVLVDESQFLTrEQVKAL 100
                 689*******************************************************98666666677899999999********************* PP

          TK  97 seklanegkivivagLdtdFerklFenilkllalaekvkklkavCmkCgkkAsftkrln......kekeviliGgkekYvsvCrkcy 177
                 s++++n +++v+++gL+tdF ++lF+++++lla+a+k+++lk+vC +Cg+kA ++ rl+      +e+e+++iGg+e+Y+svCrk+y
  EHU00569.1 101 SDVVDNLDIPVLCYGLRTDFLGELFTGSQYLLAWADKLVELKTVC-HCGRKAGMVLRLDsegkpfREGEQVVIGGNERYISVCRKHY 186
                 *********************************************.*************9**************************9 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-06     0.016      12      92 ..      10      90 ..       2     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-06
        KdpD 12 apGvGktyamLeeaqelkeegvdvviglvethgrketeallegleviprkeveykgkeleeldldailarkp.evvlvDela 92
                a  +Gk+ a+L+++ + +e+g+  ++ + e  +r  t ++ +++ +  + +v y+ ++  ++++ +  ar+p + vlvDe  
  EHU00569.1 10 AMNAGKSTALLQSSYNYQERGMRTLVYTAEIDNRFGTGKVSSRIGLSSP-AVLYNAESQLDVEIAQEHARQPvHCVLVDESQ 90
                5679****************************************99888.67888888889999999999996689***965 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   5.1e-06     0.031      69     126 ..      62     112 ..      11     121 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
      AAA_22  69 kaerlsseellealeqalraravielliiDEaqhlrseealeeLrsllnlsrkgvqli 126
                  +    +++l   ++q   ++ v +++++DE q+l + e+++ L++ ++    +++++
  EHU00569.1  62 YN---AESQLDVEIAQEHARQPV-HCVLVDESQFL-TREQVKALSDVVD--NLDIPVL 112
                 33...555566666666666667.8**********.9*******99999..6666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1517.79
//
Query:       EHU00570.1  [L=135]
Description: global DNA-binding transcriptional dual regulator H-NS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-19   69.4   7.2    7.6e-19   68.3   3.5    2.0  2  Histone_HNS    H-NS histone family
     0.0026   17.8   0.8     0.0048   16.9   0.8    1.5  1  UCMA           Unique cartilage matrix associated protein
  ------ inclusion threshold ------
      0.046   13.7   2.2       0.06   13.3   2.2    1.4  1  DUF615         Protein of unknown function (DUF615)
      0.052   14.0   4.4      0.063   13.7   4.4    1.0  1  Fez1           Fez1
      0.055   13.4   0.6      0.074   13.0   0.6    1.2  1  STAT_alpha     STAT protein, all-alpha domain
      0.056   12.7   0.2      0.071   12.3   0.2    1.1  1  FAD_binding_3  FAD binding domain
      0.058   13.8   1.0        0.1   13.0   0.9    1.4  1  DUF3037        Protein of unknown function (DUF3037)
      0.059   12.9   0.1      0.066   12.8   0.1    1.0  1  Spem1          Spermatid maturation protein 1
      0.063   13.6   0.5       0.18   12.1   0.4    1.8  2  HTH_WhiA       WhiA C-terminal HTH domain
       0.11   12.2   0.1       0.18   11.6   0.0    1.4  1  DUF1028        Family of unknown function (DUF1028)


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.4    0.0078        14      13      50 ..      11      48 ..       2      51 .. 0.80
   2 !   68.3   3.5   4.2e-22   7.6e-19       6      90 ..      37     126 ..      32     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0078
                 XXXXXXXXXXXXXXXXXXXXXXXX----SSS-----EE CS
  Histone_HNS 13 eealeaeerkealaeirelaaeyGltleelaaeakkak 50
                 + +l+a++r+  l++++e+++++ + ++e  +ea+ +k
   EHU00570.1 11 IRTLRAQARECSLETLEEMLEKFEVVVNERRDEASHSK 48
                 5668999********************99966655444 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 4.2e-22
                  XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX----SSS--.---EEEEE.....---T..TT-SSS.-EEEEES----HHHHHHH... CS
  Histone_HNS   6 ieelekqeea..leaeerkealaeirelaaeyGltleelaae.akkakkkkakakkvpaK..YrdpetegetWsGrGrkPkwlkaalaag 90 
                  ++e++ +++   +e+eer+++l+++r+++ ++G++++el+++ ++++++ kak++++paK  ++d+++e +tW+G+Gr+P+++k+a+++ 
   EHU00570.1  37 VNERRDEASHskAETEERARKLEQYRDMLLADGIDPNELFNAlSESKTSGKAKRAARPAKyqFVDENGETKTWTGQGRTPAAIKKAMEQH 126
                  5566666666558**************************99975555555555566***97779**********************9975 PP

>> UCMA  Unique cartilage matrix associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.8   2.7e-06    0.0048      71     134 .]       7      77 ..       2      77 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.7e-06
        UCMA  71 einaenrqrlaaderrreyyeeqrnefenyveeende.......qeersrekveqwrqfh.ydGldpsylyn 134
                 +in  +  r +a e   e  ee  ++fe  v+e++de        eer+r k+eq+r++   dG+dp  l+n
  EHU00570.1   7 NINNIRTLRAQARECSLETLEEMLEKFEVVVNERRDEashskaeTEERAR-KLEQYRDMLlADGIDPNELFN 77 
                 4555555666777888999**************99973332222467776.79****975269****98876 PP

>> DUF615  Protein of unknown function (DUF615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.2   3.4e-05      0.06      71     129 ..      22      91 ..       2     130 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
      DUF615  71 dveairaalealkn...........kseeetaalhelerwrdrLiaeddaaleelleeypev.DrqeLRql 129
                  +e ++++le+++            +++e++++ ++le+ rd L+a++ +  +el+++++e     + ++ 
  EHU00570.1  22 SLETLEEMLEKFEVvvnerrdeashSKAETEERARKLEQYRDMLLADGID-PNELFNALSESkTSGKAKRA 91 
                 45555555555555444444455534555669****************88.67777777665444455555 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.4   3.5e-05     0.063      28     157 ..       6     132 ..       2     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
        Fez1  28 qklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe 126
                 + +++i +l+aq re   +le+ ee ++++e  ++e+ +e  + ++e +++  + e  r+ + +   + +el ++lse++++  +a+ +++ ak q  +
  EHU00570.1   6 KNINNIRTLRAQAREC--SLETLEEMLEKFEVVVNERRDEASHSKAETEERARKLEQYRDMLLADGIDPNELFNALSESKTS-GKAKRAARPAKYQFVD 101
                 66789999******96..799***************************************9999999999999999996654.4555566666777666 PP

        Fez1 127 aeeleelkreverlraeLkeerqkkeeqass 157
                 ++  ++      r  a++k+  +++ +q ++
  EHU00570.1 102 ENGETKTWTGQGRTPAAIKKAMEQHGKQLDD 132
                 5555555555556666666666666666555 PP

>> STAT_alpha  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   4.1e-05     0.074      13      67 ..      14      67 ..       1      88 [. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.1e-05
  STAT_alpha 13 skvqeteqdirkLedeqeeFdfqyqelqkleqeraesekkelkkqkellqqmlna 67
                 + q  e ++++Le++ e+F++ ++e + + +++ + e++e +++ e++++ml a
  EHU00570.1 14 LRAQARECSLETLEEMLEKFEVVVNERRDE-ASHSKAETEERARKLEQYRDMLLA 67
                36788899******************9998.777777888889999999988765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     4e-05     0.071      28     122 ..      35     130 ..      25     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
                    EEEESSSSSCCSSS--EEE.HHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH.CHHCST-CEE--HHHHHHHHHHHHHHHTEE CS
  FAD_binding_3  28 vlvekrsttvvlpradgln.qrtmellrqlGledrilaegapnelmgealynelsdtpkaradle.lesspervtvypqteleriLvehaeerglq 121
                    v+v+ r++++ +++a++ +  r +e +r++ l+d i  +   n+l++  ++++  ++  ++a+++ ++ ++e+ t+ +q ++  ++ ++ e++g q
     EHU00570.1  35 VVVNERRDEASHSKAETEErARKLEQYRDMLLADGIDPNELFNALSESKTSGK-AKRAARPAKYQfVDENGETKTWTGQGRTPAAIKKAMEQHGKQ 129
                    79999***********987369*****************************99.66679999999999****************999999999977 PP

                    E CS
  FAD_binding_3 122 v 122
                    +
     EHU00570.1 130 L 130
                    5 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.9   5.7e-05       0.1      41      91 ..      14      64 ..       5      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
     DUF3037 41 lralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprst 91
                lra + e+ le+lee+l+++e ++++++++  + k +++er r+l++ r+ 
  EHU00570.1 14 LRAQARECSLETLEEMLEKFEVVVNERRDEASHSKAETEERARKLEQYRDM 64
                566678889******************99999999***********99876 PP

>> Spem1  Spermatid maturation protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.7e-05     0.066     117     223 ..      12     117 ..       1     122 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
       Spem1 117 rssrRrrrrlqhrkss.rscshqqrlrnsrrfrkrrsvfrkqrhsrkmsqlrpvpsfdledqdsaleeeddlsfPhpkyprrgwgglYqqtglpsnvGl 214
                 r+  R + r +  ++  ++ ++ + + n+rr + ++s  +++++ rk  q r +   d  d +++++  ++ s    k  r ++   Yq ++  ++   
  EHU00570.1  12 RTL-RAQARECSLETLeEMLEKFEVVVNERRDEASHSKAETEERARKLEQYRDMLLADGIDPNELFNALSE-SKTSGKAKRAARPAKYQFVDENGETKT 108
                 333.444444333333255566677899**************************************99988.7788999999999************** PP

       Spem1 215 WGrqGgiLa 223
                 W  qG+  a
  EHU00570.1 109 WTGQGRTPA 117
                 *99998655 PP

>> HTH_WhiA  WhiA C-terminal HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4    0.0001      0.18      40      82 ..       6      60 ..       1      62 [. 0.87
   2 ?   -1.5   0.0       1.9   3.4e+03      24      34 ..     117     127 ..      99     134 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                HHHHHHHHHHHH-TTS-HHHHHHTT..............T--HHHHHHHHHHHHH CS
    HTH_WhiA 40 eklkevaelRlenpdaSLkeLgell............eppisKSgvnhrlrklke 82
                +++ ++  lR + +++SL+ L e+l            e   sK   + r rkl++
  EHU00570.1  6 KNINNIRTLRAQARECSLETLEEMLekfevvvnerrdEASHSKAETEERARKLEQ 60
                56778889*****************999999999988888999999999999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                 HHHHHHHHHT- CS
    HTH_WhiA  24 eaielieekkg 34 
                 +ai++ +e++g
  EHU00570.1 117 AAIKKAMEQHG 127
                 44444444433 PP

>> DUF1028  Family of unknown function (DUF1028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.18      56     107 ..      65     122 ..      44     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
                 HHHTT--HHHHHHHHHHT-T....TGGG-..EEEEEETTS-EEEEE-TTS-S-EEEE. CS
     DUF1028  56 lleagasaeealeallaade....grelR..QlavvdakgetaaftGeeclewaghrt 107
                 ll++g +++e  +al ++++    +r+ R   ++ vd +get ++tG+  ++ a +++
  EHU00570.1  65 LLADGIDPNELFNALSESKTsgkaKRAARpaKYQFVDENGETKTWTGQGRTPAAIKKA 122
                 7899********99997766433333444446899*************9999766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1390  (0.077528); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 981.06
//
Query:       EHU00571.1  [L=335]
Description: NAD-dependent epimerase/dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-59  201.1   0.0    3.4e-59  200.9   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.1e-56  191.1   0.1    2.4e-56  190.9   0.1    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    9.4e-20   70.8   0.0    1.2e-19   70.4   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.5e-15   57.1   0.0    2.9e-15   56.1   0.0    1.5  1  RmlD_sub_bind    RmlD substrate binding domain
    5.9e-14   51.9   0.0      6e-13   48.6   0.0    2.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.6e-08   34.2   0.1    4.5e-08   32.8   0.1    1.6  1  adh_short        short chain dehydrogenase
    2.1e-07   31.0   0.0    4.9e-07   29.8   0.0    1.6  1  NAD_binding_10   NAD(P)H-binding
      9e-07   28.3   0.1    0.00024   20.4   0.0    2.3  2  NAD_binding_4    Male sterility protein
      3e-05   24.0   0.0    6.5e-05   22.9   0.0    1.5  1  KR               KR domain
  ------ inclusion threshold ------
      0.012   15.2   0.2       0.02   14.5   0.1    1.4  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      0.023   14.3   0.1      0.037   13.6   0.1    1.3  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9   0.0   2.1e-62   3.4e-59       1     331 [.       4     324 ..       4     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: 200.9 bits;  conditional E-value: 2.1e-62
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG aGfiG ++ ++Ll+ g++v+gi+++++ ++++  ++  +      +++++++k Dl D++++  l++++++++v++LAAq  V++s+e+P+
     EHU00571.1   4 LVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVSLKQARLDL--IGDNPSFTFVKTDLADRQAIAALFEQHKFQRVIHLAAQAGVRYSLENPH 97 
                    9****************************9998887666555443..345789******************************************* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB.-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpq.tEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrget 191
                    +++++nv+G l++Le +r++ +e   +++ aS+s vYG  ++ p+ tE+   +P s Yaa+K + + + + y + y+l+++  ++f  ++p   ++
     EHU00571.1  98 AYVDANVIGHLNILEGCRHHRVE---HLLYASSSSVYGLNSKLPFsTEDSVDHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFFTVYGPWGRPD 190
                    ********************987...799***************8689999*****************************************9999 PP

                    SCCCHHHHHHHHHHTTS.-C-EECTTTT-EEEEEEHHHHHHHHHHHHHC.SS-.--EEE-TT-EEECHHCHHCCHHCCCHHHHHH........... CS
  GDP_Man_Dehyd 192 fvtrkitravarialgk.qevlylGnldakRdwghvkDyveamwlmlqq.dkp.edyviatgethsvrefvelaflelgktiewegkgeeevgrak 284
                    +   k+tra+    +g+  +v  + +++ +Rd+++++D+vea+ ++  +  +p e + +++g   s        + +lg++  +  +  + +++++
     EHU00571.1 191 MALFKFTRAMI---AGEaIDV--YNQGKMQRDFTYIDDVVEAIIRLQDRiPQPdESWTVESGSAASSSAP--YRIYNLGNSQPM--SLIRYIEAIE 277
                    99999999875...4541344..5677779*************995444322324466666666555544..445555554333..3455667778 PP

                    .TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 285 esgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                    +   v+ + +  +++pg+v ++ +d+s + + +g+kp+++++e+vr+
     EHU00571.1 278 KALGVTANKNLMPMQPGDVLATSADTSDLFNAVGFKPQTGVDEGVRR 324
                    888999999************************************97 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.1   1.5e-59   2.4e-56       2     228 ..       4     234 ..       3     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 1.5e-59
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiek 90 
                 lVtGa+GfiG ++ ++ll++g++v+g+d+l++    ++++            ++v+ dl dr+a+++lf++++++ vihlAa++gv+ s e+p +++++
  EHU00571.1   4 LVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVSLKQARldligdnpsfTFVKTDLADRQAIAALFEQHKFQRVIHLAAQAGVRYSLENPHAYVDA 102
                 8*****************************99999888887799******************************************************* PP

                 HTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSS.BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHH CS
   Epimerase  91 nlqgtlnlleaarkagvkrllflsSsevYGkdaeqp.keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvip 187
                 n++g ln+le +r + v+ ll++sSs+vYG + + p  +e++    + +p s Yaa+K a e + + y + y+l+++ lr f++yGp    g+++  ++
  EHU00571.1 103 NVIGHLNILEGCRHHRVEHLLYASSSSVYGLNSKLPfSTEDS----VdHPVSLYAATKKANELMSHTYSHLYQLPTTGLRFFTVYGPW---GRPDMALF 194
                 ******************************999999555555....55****************************************...99****** PP

                 HHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 188 alirkilegkqevtllgdgtalRdflyveDvaeaillvleh 228
                 ++ r + +g+  + ++++g+ +Rdf y++Dv+eai+++ ++
  EHU00571.1 195 KFTRAMIAGE-AIDVYNQGKMQRDFTYIDDVVEAIIRLQDR 234
                 **********.************************998776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   7.2e-23   1.2e-19       1     274 [.       4     286 ..       4     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 7.2e-23
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD.......lrespelleelskvnvkkviegDvtdkdkleealegvdv..vihlaslvdvag.kltedeim 89 
                 +vtG+aGF+G ++ ++L+ +++  +v  +D       +  ++  l+ +      +++++D+ d + + +  e+ +   vihla+   v+    +   + 
  EHU00571.1   4 LVTGAAGFIGFHVSQRLLAAGH--QVVGIDnlndyydVSLKQARLDLIGDNPSFTFVKTDLADRQAIAALFEQHKFqrVIHLAAQAGVRYsLENPHAYV 100
                 69*******************6..4444444444444777777777777777777**************9998654339*****999997466778999 PP

   3Beta_HSD  90 kvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdk. 187
                 ++nv G  n+le c+++ v+ l+Y Ss +v g ns + ++     ++     +++ y+ +K+  E +   +     +   +l T  LR  ++yG+  + 
  EHU00571.1 101 DANVIGHLNILEGCRHHRVEHLLYASSSSVYGLNS-KLPFS----TEDSVDHPVSLYAATKKANELMSH-T----YSHLYQLPTTGLRFFTVYGPWGRp 189
                 ********************************954.56676....3344566899******98875533.3....3456689*************6541 PP

   3Beta_HSD 188 .llvpllkqlaklglalfkigdeevlsdrvYvgNvawahilAaralqdpkk..........kssvagqayfisddsPvesyddfnltllkelglelks 274
                  + +  + +++  g+a+  + + ++  d++Y + v+ a+i     + +p +          +ss+  + y   + +P+     +   + k+lg+  ++
  EHU00571.1 190 dMALFKFTRAMIAGEAIDVYNQGKMQRDFTYIDDVVEAIIRLQDRIPQPDEswtvesgsaaSSSAPYRIYNLGNSQPMS-LIRYIEAIEKALGVTANK 286
                 14445566777888899999********************988888888766777776554455555555555667776.777777777777777665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.8e-18   2.9e-15       1     198 [.       1     233 [.       1     301 [. 0.80

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.8e-18
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.........................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre.........................eldltdaeavaellkeakpdvvvnaAAytavDkaEsee 71 
                    m+ lvtGa G +G ++ ++l ++g++v+++++                          ++dl+d++a+a+l++++k + v+++AA   v    +++
     EHU00571.1   1 MNFLVTGAAGFIGFHVSQRLLAAGHQVVGIDNLndyydvslkqarldligdnpsftfvKTDLADRQAIAALFEQHKFQRVIHLAAQAGVRYSLENP 96 
                    789***************************87789************************************************************* PP

                    HHHHHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS--.--SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESS..SSS-H CS
  RmlD_sub_bind  72 eaayavnaeavealAeaaaavga.lLihvStDyVFdGekkrpYeeddet.sPlnvYGrtKlaGEqavla....agkkalivRtswvyge..kgknf 159
                    +a   +n+ +  ++ e ++++ + +L++ S+  V+  + k p++++d + +P+++Y++tK a E +       ++  ++ +R+  vyg   +    
     EHU00571.1  97 HAYVDANVIGHLNILEGCRHHRVeHLLYASSSSVYGLNSKLPFSTEDSVdHPVSLYAATKKANELMSHTyshlYQLPTTGLRFFTVYGPwgRPDMA 192
                    *******************999857*****************998887638************988776333333344557777777773233345 PP

                    HHHHHHHHHH-SEEEEESS..-EE--EEHHHHHHHHHHHHH CS
  RmlD_sub_bind 160 vktmlrlakereelkvvaD..qlgsPTsardlAevllqlle 198
                    ++++ r     e ++v +    ++  T+ +d+ e+++ l +
     EHU00571.1 193 LFKFTRAMIAGEAIDVYNQgkMQRDFTYIDDVVEAIIRLQD 233
                    55566666666666665531123445666666666666555 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   3.7e-16     6e-13       2     171 ..       4     182 ..       3     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 3.7e-16
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlvee 95 
                      lvtGa+G iG ++ +++l+   + + + + +++   ++++   + + + + +++   v +d++d++ ++ ++e++k + v+h AA   V    e
       EHU00571.1   4 LVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVSLKQARLDLIGD-NPSFT--FVKTDLADRQAIAALFEQHKFQRVIHLAAQAGVRYSLE 94 
                      8****************************9**9999999996555555.33334..6789********************************** PP

                      SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE...............GGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EE CS
  Polysacc_synt_2  96 npleaiktNvlgtenvieaaieagvkkvvliSt...............DKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNV 171
                      np+  ++ Nv+g  n++e + +++v+++++ S+               D   +P++++ atK++ e++  ++++     +   +  Rf  V
       EHU00571.1  95 NPHAYVDANVIGHLNILEGCRHHRVEHLLYASSssvyglnsklpfsteDSVDHPVSLYAATKKANELMSHTYSHLY---QLPTTGLRFFTV 182
                      ***************************9987642222222222222223334588888888888887777666655...333444455444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   2.8e-11   4.5e-08       4     165 ..       4     168 ..       2     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 2.8e-11
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 lvtGa++ IG  ++++l+++G +vv +d+ ++     +k+ + +    + +++++++D++dr+++ al+e+   k++++  L + AG+       ++s 
  EHU00571.1   4 LVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVSLKQARLDligdNPSFTFVKTDLADRQAIAALFEQH--KFQRVIHLAAQAGV-------RYSL 93 
                 8**************************999998877777776656766888*******************98..9*************.......7999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHH....HHHCTTEEEEEEEEGGGTSB-TT....BHHHHHHHHHHHHHHHHHHH CS
   adh_short  99 eewervievNltgvflltravlpa....mlkqssGrIvnvsSvagkvpvag....vaaYsAsKaavagltrslak 165
                 e+  ++++ N+ g +++ + +  +    +l +ss ++    S   +    +    v+ Y+A+K a + ++++ ++
  EHU00571.1  94 ENPHAYVDANVIGHLNILEGCRHHrvehLLYASSSSVYGLNSKLPFSTEDSvdhpVSLYAATKKANELMSHTYSH 168
                 999999999999999987665443222266777777777777766544433112256788888777777776655 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     3e-10   4.9e-07       1     130 [.       7     161 ..       7     178 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT..........HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S..EEEES---TCC.....HHHH. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn..........peklaeleaeeglevvegdvtdvedlaealkgad..aVvsalggggk.....deeg. 77 
                     GA G +G ++ ++lla+g h+v+ +  n          +++l+ + +++  + v+ d+ d +++a+ ++++    V+  +++ g      +    
      EHU00571.1   7 GAAGFIGFHVSQRLLAAG-HQVVGI-DNlndyydvslkQARLDLIGDNPSFTFVKTDLADRQAIAALFEQHKfqRVIHLAAQAGVrysleN--Ph 97 
                     9****************5.**9876.4433455555546677777799*********************9985545555543333366651..13 PP

                     .........HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHH...CCHHHHHHHHHHHHH CS
  NAD_binding_10  78 .........aknivdaakeagvkRfvlvsaigvgdevpgefgewnke...llkaylaakraaeel 130
                              + ni++ ++ + v+++++ s+  v+   +++++  +++      + +aa ++a el
      EHU00571.1  98 ayvdanvigHLNILEGCRHHRVEHLLYASSSSVYG-LNSKLPFSTEDsvdHPVSLYAATKKANEL 161
                     455556699**********************9995.44444444443111334445555555555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0039       6.3       1      21 [.       5      25 ..       5      32 .. 0.86
   2 !   20.4   0.0   1.5e-07   0.00024      86     208 ..      75     184 ..      57     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0039
                   EE-TTSHHHHHHHHHHHHHS- CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttp 21
                   +TGa GF+G ++ ++LL    
     EHU00571.1  5 VTGAAGFIGFHVSQRLLAAGH 25
                   7***************98765 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.5e-07
                    HH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHH CS
  NAD_binding_4  86 eevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeq 178
                    ++ + +ih aA+  + +++++    +++Nv G  ++le ++  +   +ll+ S++ v+g +++                   ++++ +     Y  
     EHU00571.1  75 HKFQRVIHLAAQAGVRYSLENphaYVDANVIGHLNILEGCRHHRVE-HLLYASSSSVYGLNSKL---------------PFSTEDSVDHPVSLYAA 154
                    57899*******99999998766689***************88777.*******9999988843...............34445555555567999 PP

                    HHHHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 179 sKalaEklvrearrrsglpvvivRpsiitg 208
                    +K + E + +++++  +lp++ +R  +++g
     EHU00571.1 155 TKKANELMSHTYSHLYQLPTTGLRFFTVYG 184
                    999999999999988889988888888777 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     4e-08   6.5e-05       3     142 ..       3     132 ..       2     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4e-08
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +l+tG++G +G ++++ l++ g + + +   +   d + k+    l   + + ++v+ D++d++a++al+e+ k      + vih A  +      + +
  EHU00571.1   3 FLVTGAAGFIGFHVSQRLLAAGHQVVGIDNLNDYYDVSLKQARLDLIGDNPSFTFVKTDLADRQAIAALFEQHK-----FQRVIHLAAQAG----VRYS 92 
                 69*********************99998888764444444444445566789*******************998.....567999997655....5778 PP

                 HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH- CS
          KR 102 aedleqvlapKvkGawnLhelledesldffvlfSSiagllg 142
                  e+ ++ + + v G  n+ e +++++++++++ SS  +++g
  EHU00571.1  93 LENPHAYVDANVIGHLNILEGCRHHRVEHLLYASSS-SVYG 132
                 9999*************************9877775.5555 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.2e-05      0.02       1      83 [.       7      93 ..       7     119 .. 0.79
   2 ?   -4.1   0.0       5.8   9.5e+03     140     154 ..     151     165 ..     140     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                  TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHT.TSE..E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGC CS
  adh_short_C2  1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeel.gae..v..lecDVtdeeqvealveevvekfgklDilvnnagiapkl 83
                  Gaa  IG+++ ++l ++G +vv  d  ++  + +++++  +l g +  +  +++D +d+++++al+e+  +kf+++  l   ag+  +l
    EHU00571.1  7 GAAGFIGFHVSQRLLAAGHQVVGIDNLNDYyDVSLKQARLDLiGDNpsFtfVKTDLADRQAIAALFEQ--HKFQRVIHLAAQAGVRYSL 93
                  88899*****************99988887655555554443133344346****************9..7788888888888886664 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.8
                   HHHHHHHHHHHHHHH CS
  adh_short_C2 140 aygaaKaalealtry 154
                    y+a+K a e ++++
    EHU00571.1 151 LYAATKKANELMSHT 165
                   566666666665554 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   2.3e-05     0.037       2      65 ..       4      75 ..       3     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S........-SHHHHHHHHSTT.EEEES-TT-HHHHHHHHTT- CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt........kselakslkeaGv.elvkgdlddkeslvealkgv 65
                lv+Ga+G +G +v + ll+agh+v  +  ++        k+ +++ + +++  ++vk dl d++ +++++++ 
  EHU00571.1  4 LVTGAAGFIGFHVSQRLLAAGHQVVGI-DNLndyydvslKQARLDLIGDNPSfTFVKTDLADRQAIAALFEQH 75
                89**********************765.4445779999999999999999973667*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2337.20
//
Query:       EHU00572.1  [L=446]
Description: UDP-glucose dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-64  215.8   0.8      6e-64  215.1   0.8    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    7.7e-40  135.0   0.0    1.5e-39  134.1   0.0    1.5  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
    9.9e-30  103.1   0.0    4.2e-29  101.1   0.0    2.1  3  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0002   21.6   0.2        1.2    9.3   0.0    2.9  3  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00034   20.5   0.0      0.001   19.0   0.0    1.8  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0034   16.7   0.4     0.0061   15.9   0.4    1.5  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0042   17.3   1.9      0.029   14.6   0.1    2.8  2  TrkA_N          TrkA-N domain
     0.0084   16.4   0.0      0.075   13.3   0.0    2.2  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.038   13.6   0.0    1.6  2  ApbA            Ketopantoate reductase PanE/ApbA
      0.037   14.5   0.3        1.4    9.4   0.2    2.6  2  NAD_binding_7   Putative NAD(P)-binding
      0.083   12.9   0.1        0.4   10.6   0.0    2.0  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
        0.1   11.8   0.1       0.18   11.0   0.1    1.4  1  FAD_binding_3   FAD binding domain
       0.16   12.5   0.4        0.5   11.0   0.4    1.8  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.8   4.3e-67     6e-64       1     187 []       1     187 [.       1     187 [. 0.94

  Alignments for each domain:
  == domain 1  score: 215.1 bits;  conditional E-value: 4.3e-67
                     SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB CS
  UDPG_MGDP_dh_N   1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaa 95 
                     mk++v+G GYvGlv+aavlae+gh+v+++D+de+kv++l++g+ipi+epgL  lvk++ esgrl+f+td+   v++  + fiaVgTP ++ + +a
      EHU00572.1   1 MKVTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEKKVENLKKGQIPIFEPGLTPLVKSNYESGRLKFSTDAALGVNHGVMQFIAVGTPPDE-DGSA 94 
                     89****************************************************************************************.8888 PP

                     -THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-.TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHHHHHHHH CS
  UDPG_MGDP_dh_N  96 DlkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkk.gvdfdvvsnPEflregsavkdllnpdrvviGveekkaeaaleel 187
                     Dlkyv+++ar+ia+++ ++kvv+ kSTvpvgta+ +   + e  +++  +++fdvvsnPEfl+eg av d+++p+r+v+G+++++  ++l+el
      EHU00572.1  95 DLKYVTAVARTIAQHMTDHKVVIDKSTVPVGTADRVRAVMTETLQARDaNISFDVVSNPEFLKEGAAVADCMRPERIVVGTDNDAVVELLREL 187
                     *********************************96665555555555589*********************************9988887775 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0   1.1e-42   1.5e-39       1      93 [.     204     296 ..     204     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 1.1e-42
  UDPG_MGDP_dh   1 etAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgleaelleavrevNe 93 
                   ++AEl+K+aaN++latkIsf+Ne++nl+e+lg+d+e+V++++g+d+rig++f++pg+G+GGsc+pkDv+aL+++ae+ g++++ll+av++vN+
    EHU00572.1 204 RSAELTKYAANCMLATKISFMNEISNLAERLGADIEKVRQGIGSDSRIGYHFIYPGCGYGGSCFPKDVQALIRTAESIGYTPRLLKAVEDVND 296
                   69******************************************************************************************8 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.7   9.2e+03      85      99 ..     104     119 ..      97     123 .. 0.74
   2 ?   -2.1   0.0       3.6     5e+03      53      53 ..     129     129 ..     103     177 .. 0.51
   3 !  101.1   0.0     3e-32   4.2e-29       1     105 []     320     424 ..     320     424 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.7
                     HHHHHCC.SS-EEEES CS
  UDPG_MGDP_dh_C  85 aklkelm.kpavvfDg 99 
                      ++++ m  ++vv+D 
      EHU00572.1 104 RTIAQHMtDHKVVIDK 119
                     5678888899999985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.6
                     C CS
  UDPG_MGDP_dh_C  53 g 53 
                     +
      EHU00572.1 129 R 129
                     2 PP

  == domain 3  score: 101.1 bits;  conditional E-value: 3e-32
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCCSS-E CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelmkpav 95 
                     a++Gl+fK++tdD+Re+++  ++e L e+ga v+++DP +++ea++ ++++++++++ + e+al+gad +vi+te+++f+  d++ +k+ +k++v
      EHU00572.1 320 ALWGLSFKPNTDDMREASSRVLMEALWEAGASVQAFDPEAMDEAQRIYGHRDDLKLMGTKESALQGADGLVICTEWQNFRAPDFDVIKNALKQPV 414
                     79************************************************9******************************************** PP

                     EEESSS-CCC CS
  UDPG_MGDP_dh_C  96 vfDgrnvldp 105
                     +fDgrn++dp
      EHU00572.1 415 IFDGRNLYDP 424
                     *******996 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00085       1.2       1      43 [.       2      44 ..       2      57 .. 0.90
   2 !    8.8   0.2    0.0012       1.7      67     106 ..      97     136 ..      94     146 .. 0.84
   3 ?   -2.0   0.0       2.6   3.6e+03      16      62 ..     343     392 ..     340     421 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00085
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTE CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaega 43
                   k+ + G+G  G   a  l++ g++v +++++++kve+l + ++
     EHU00572.1  2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEKKVENLKKGQI 44
                   57899********************************998775 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0012
                    HHHHHHHHSHCCC--TT-EEEE-S---HHHHHHHHHHHHH CS
  NAD_binding_2  67 kavdeviegllealkkgdilidgstsspedtrelakelke 106
                    k v +v + +++++   +++id st+ + ++ ++ + ++e
     EHU00572.1  97 KYVTAVARTIAQHMTDHKVVIDKSTVPVGTADRVRAVMTE 136
                    568999999******************9999998776654 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.6
                    HHHHHTT-EEEEE-SSH.HHHHHHHHTT..EEE-SSHHHHHHHCSEEEE- CS
  NAD_binding_2  16 lnllkagykvavynrtk.ekveelvaeg..akaaesieelvasldvvitm 62 
                    + l +ag +v +++ ++ ++++++  ++  +k++ + e++++++d  +++
     EHU00572.1 343 EALWEAGASVQAFDPEAmDEAQRIYGHRddLKLMGTKESALQGADGLVIC 392
                    66778899999999554145555555446677777777777777655554 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   7.4e-07     0.001       1      40 [.       2      41 ..       2      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.4e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                kv+v G G +G   aav+a+ g++V  +d++e+++e+ ++
  EHU00572.1  2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEKKVENLKK 41
                79********************************998765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   4.5e-06    0.0061      30      98 ..       2     119 ..       1     140 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE.................................................H CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev.................................................l 78 
                  kv+v+G G +Gl  +a+ +++g +V  +Dv++++ e+l++ +  ++e                                                  +
   EHU00572.1   2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEKKVENLKKGQIPIFEPgltplvksnyesgrlkfstdaalgvnhgvmqfiavgtppdedgsadlkyV 99 
                  8************************************9986555455566667777777777777777777777777777777777777777777766 PP

                  CHHHHHHHHHHHH-SEEEE- CS
  AlaDh_PNT_C  79 ksqeellaeavkeadvvigt 98 
                  ++ ++++a+++ +  vvi  
   EHU00572.1 100 TAVARTIAQHMTDHKVVIDK 119
                  66667777777777777754 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.1e-05     0.029       2      44 ..       4      46 ..       3      49 .. 0.89
   2 ?    1.1   0.2      0.33   4.5e+02      35      57 ..     136     158 ..      98     221 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEE CS
      TrkA_N  2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglev 44
                 + G G vG   a  L e g+ dv+ id de++ve+l++  +++
  EHU00572.1  4 TVFGIGYVGLVQAAVLAEvGH-DVLCIDVDEKKVENLKKGQIPI 46
                699***************888.7**************9876665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.33
                 HHHHHTTSEEEES-TTSHHHHHH CS
      TrkA_N  35 eelreeglevvvgdatdeevLee 57 
                 e+l+++ +++    ++++e+L+e
  EHU00572.1 136 ETLQARDANISFDVVSNPEFLKE 158
                 33344444444455555555554 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.4e-05     0.075       3      42 ..     206     245 ..     205     250 .. 0.91
   2 ?   -0.0   0.0      0.73     1e+03      74     101 ..     267     294 ..     261     303 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-05
  NAD_binding_11   3 GqavKlvnnlllainlaaasEalvlaekaGldpekvlevi 42 
                     ++ +K + n +la+++  + E   lae++G d+ekv + i
      EHU00572.1 206 AELTKYAANCMLATKISFMNEISNLAERLGADIEKVRQGI 245
                     5679*******************************98865 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.73
  NAD_binding_11  74 mlKDlglalelareagaplpllalaeql 101
                     + KD++  + +a++ g+  +ll+++e +
      EHU00572.1 267 FPKDVQALIRTAESIGYTPRLLKAVEDV 294
                     66***************99999999876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-05     0.038       1      43 [.       3      46 ..       3      68 .. 0.90
   2 ?   -3.3   0.0       4.7   6.4e+03      29      43 ..     104     117 ..      95     149 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrl 43
                +++ G+G +G + aa La+ g+dv +i+ ++ ++e+lkk  + +
  EHU00572.1  3 VTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEkKVENLKKGQIPI 46
                5799*********************************9977655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.7
                 SCHHHHHHHHHCEEE CS
        ApbA  29 rsrrlealkknGlrl 43 
                 r+  ++++ ++ + +
  EHU00572.1 104 RTI-AQHMTDHKVVI 117
                 333.33333333333 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2     0.001       1.4       9      46 ..       2      50 ..       1     157 [. 0.72
   2 ?    2.5   0.0      0.14   1.9e+02      24      70 ..     343     394 ..     335     409 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevkeele............e 46
                   kv v+G G v++  +  l+e g +v  ++ + ++++e            +
     EHU00572.1  2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDVD-EKKVEnlkkgqipifepG 50
                   799***********************99888.333333445555555553 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.14
  NAD_binding_7  24 rklleagakvtvvapevkeeleelvklaeeel......ekdlegadlviaatd 70 
                    + l eaga v+  +pe  +e++ ++  ++++l      e+ l+gad ++++t+
     EHU00572.1 343 EALWEAGASVQAFDPEAMDEAQ-RIYGHRDDLklmgtkESALQGADGLVICTE 394
                    67999***********544444.333345554445555677999997777765 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00029       0.4       1      40 [.       2      41 ..       2      44 .. 0.95
   2 ?   -1.0   0.0       1.1   1.5e+03      85     133 ..     102     153 ..      97     200 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeine 40
                    k++v+G G  G   A+vlae gh+v  +  +e+ +e++++
      EHU00572.1  2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEKKVENLKK 41
                    79*********************************99876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                     HHHHHCCC--TT-EEEE---SEET.TTEEHHHHHHHHH-S--....EEEEESS CS
  NAD_Gly3P_dh_N  85 vlkklkgllkkkailvsliKGieegtlkllsevieeelkeek....vavlsGp 133
                     v+++++++++++++++  +  +  gt +++  v++e l+         v+s p
      EHU00572.1 102 VARTIAQHMTDHKVVIDKS-TVPVGTADRVRAVMTETLQARDanisFDVVSNP 153
                     4444444443333333222.233344444444444444433333223333333 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.18       3      40 ..       2      39 ..       1      45 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                   +V + G G +Gl+ a +L+e G +v++++  +++v++ 
     EHU00572.1  2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDVDEKKVENL 39
                   79999*************************99999876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00036       0.5       1      30 [.       2      31 ..       2      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                EEEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvver 30
                kv+v G Gy+gl  A++lae g++V +++ 
  EHU00572.1  2 KVTVFGIGYVGLVQAAVLAEVGHDVLCIDV 31
                689**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3308.73
//
Query:       EHU00573.1  [L=300]
Description: glucose-1-phosphate uridylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-25   89.8   0.0    2.7e-25   89.4   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    7.3e-07   29.7   0.0    1.5e-06   28.7   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
     0.0029   17.4   0.0     0.0081   15.9   0.0    1.6  2  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.023   14.6   0.1    1.3  1  CTP_transf_3     Cytidylyltransferase


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0     6e-29   2.7e-25       1     242 [.      10     276 ..      10     280 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 6e-29
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT...................... CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg...................... 72 
                      kavI + G GtR+ P t++++k ++p ++k +liq+++++++++gi+e iv +t+  +  +e+++ +  +++                      
       EHU00573.1  10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGINE-IVLVTHSSKNAIENHFDTSFELEsmlekrvkrqlldeiqsicpph 101
                      689999************************.*****************.777777888999999999988889999**************9988 PP

                      SEEEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST........THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC.... CS
  NTP_transferase  73 vevlialepegkgtAdAvalaaelledeksdelvlvLggDhlikd........ayeeavkkaiekaakgtvtfgivpveeateyGviead.... 154
                      v++  + +   kg+ +Av+ a  l++de     +++L+ D++i++        ++ e++ + +e+++     ++++pv++ t+yGv+  +    
       EHU00573.1 102 VTIMQVRQGIAKGLGHAVMCAHPLVGDEPV---AVILP-DVIIDEyesnptkdNLAEMLSRYEESGR---SQIMVEPVSDVTAYGVVDCKgael 188
                      888888899999**************9994...77777.5666655788655566666666666666...9*****************998888 PP

                      ...TTSBEEEEECS-SSHSH.CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHH CS
  NTP_transferase 155 ...eegrverfvEKPkeaka.selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllean 242
                         ++      vEKPk+ +a s+la+ G Yv   ++   lak   + + ge ++td +  ++e+++v++++l k+ +   D G+   +++a 
       EHU00573.1 189 npgDSAPMVGVVEKPKASEApSNLAVVGRYVLSADIWPLLAK-TPPGAGGEVQLTDSIAMLMEKETVEAYHL-KGVS--HDCGNKLGYMQAF 276
                      776666999********99999******************88.99999****************99997755.5544..7888877777665 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.3e-10   1.5e-06       2      97 ..      12     139 ..      11     174 .. 0.63

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.3e-10
                   EEEEESS-TTT....TT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHH.........................HHTTCTS-EEE-T CS
  NTP_transf_3   2 viLAGGrSsRm....gg.dKallplggkpllervldalraagvdevvvvggd..eevla.........................alarlgvrvvede 66 
                   vi  +G ++Rm    +  +K +lpl +kpl+++v++   aag++e+v+v+ +  +++++                          + ++ v++++  
    EHU00573.1  12 VIPVAGLGTRMlpatKAiPKEMLPLVDKPLIQYVVNECIAAGINEIVLVTHSskNAIENhfdtsfelesmlekrvkrqlldeiqSICPPHVTIMQV- 107
                   66679******6654238********************************9843344445555555555555555554333222111223333333. PP

                   TSS-SHHHHHHHHHHHH....SSSCEEEEETT-T CS
  NTP_transf_3  67 dpgkgplaslaaalraaa...dadavlvlacDmP 97 
                      +g++++l +a+  a    ++++v+v++ D++
    EHU00573.1 108 --RQGIAKGLGHAVMCAHplvGDEPVAVILPDVI 139
                   ..34444444444433223347777777777765 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.8e-06    0.0081       3      55 ..      11      65 ..       9      78 .. 0.85
   2 ?   -2.2   0.0      0.64   2.8e+03     107     133 ..     149     175 ..     147     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.8e-06
                EEEECTTSSCTT...-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGG CS
        IspD  3 vvipAAGsGkRm...kaglpKqflelkgqtllehtvdallaskavdkivvvvsedd 55
                +vip AG G+Rm    +  pK  l l +++l++  v+   a   +++iv+v +  +
  EHU00573.1 11 AVIPVAGLGTRMlpaTKAIPKEMLPLVDKPLIQYVVNECIA-AGINEIVLVTHSSK 65
                89*********95545778******************9999.77999999988766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.64
                 HHHHHHHHHHHHTTCSEEEEEEE-SSE CS
        IspD 107 aadiaellaaaeqstqgailalpvkDt 133
                 ++++ae+l   e+s  + i++ pv+D 
  EHU00573.1 149 KDNLAEMLSRYEESGRSQIMVEPVSDV 175
                 577899999999999999******995 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   5.1e-06     0.023      16      86 ..      31      99 ..      26     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                  GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTT.SEEEE--TTCSSHHHHHHHHHHHHTT CS
  CTP_transf_3 16 KnlldlggkpliayvleaalkskafekvivaTDseeiknvakefg.asvlvtrsslesdterflevvkaflm 86
                  K +l+l +kpli+yv+ + + ++   ++++ T  ++ kn++++++  s+ + +  ++++++ +l++++ + +
    EHU00573.1 31 KEMLPLVDKPLIQYVVNECIAAGI-NEIVLVT--HSSKNAIENHFdTSFELESMLEKRVKRQLLDEIQSICP 99
                  99*******************888.6666666..45578888888899999999999999999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2354.54
//
Query:       EHU00574.1  [L=338]
Description: response regulator of RpoS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-29  100.8   0.1    9.5e-29   99.8   0.1    1.5  1  Response_reg  Response regulator receiver domain
     0.0013   18.7   0.0     0.0022   17.9   0.0    1.3  1  SpoIIE        Stage II sporulation protein E (SpoIIE)
     0.0042   17.1   0.0      0.046   13.8   0.0    2.2  2  BRCT_3        BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.1   1.6e-32   9.5e-29       1     109 [.      10     118 ..      10     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 1.6e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+D+ ++r+ll+q+l++ g  ++ eaedg ea+++l++++v l+++D++mp+m+G+++++++r + ++lp++i++a+++++d+ ++l++g++d+
    EHU00574.1  10 ILIVEDEAVFRSLLNQFLTSMGA-VTVEAEDGLEAIAQLDKHAVELVICDLEMPRMNGIQFVEHLRSHGNTLPILIISATENMSDIAQVLRLGVQDV 105
                   8**********************.999********************************************************************** PP

                   EESSG.-HHHHHH CS
  Response_reg  98 lsKpf.dpeeLlk 109
                   l Kp+ + e+ ++
    EHU00574.1 106 LLKPLkNFERFRE 118
                   ****955555555 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.7e-07    0.0022       2     114 ..     195     309 ..     194     318 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.7e-07
                 TTEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHHTTTS........HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEETT CS
      SpoIIE   2 dgrlalvvgDvvGhGleAalimgllrsalrelatagle........paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrpd 92 
                 d++la++  Dv+  G +  l + llr +++ l++++l+        ++ +l+++n +l r+ + +   + ++++ y+   ++l +++aG +  l v++ 
  EHU00574.1 195 DKDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLSgqkqrlpeLSSLLRQVNLLL-RQANLT-GQFPLLVGYYHRGLKNLVLVSAGLNATLHVQA- 290
                 7899******************************************************.888888.89******************************. PP

                 STEEEEE--SS--TTTSSST-E CS
      SpoIIE  93 ggtklllastglplGilpeady 114
                     +   s+g+plG ++ +++
  EHU00574.1 291 ---HQIQLSNGVPLGTMGSTHI 309
                 ...5566689999999877655 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.6e-06     0.046       2      59 ..       4      63 ..       3      71 .. 0.87
   2 ?    0.5   0.0      0.11   6.5e+02      15      64 ..     111     159 ..     101     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.6e-06
      BRCT_3  2 ilkdlkillvseqkefeelWseilklaGaavvkkekseaee..islgkldvvvtdsscpe 59
                +l + kil+v ++  f++l ++ l+ +Ga +v++e   +    ++ +++++v+ d ++p+
  EHU00574.1  4 PLIGKKILIVEDEAVFRSLLNQFLTSMGAVTVEAEDGLEAIaqLDKHAVELVICDLEMPR 63
                77889**************************99987766555688889999999999986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.11
      BRCT_3  15 kefeelWseilklaGaavvkkekseaeeislgkldvvvtdsscpeevlkk 64 
                 k+fe + + + ++   ++ +++ +e e+  ++  d++v d+s  +++lk+
  EHU00574.1 111 KNFERFREAVYECLYPSMFTSKVEEDEQ-LFQDWDALVRDPSAAAKLLKE 159
                 5788888888888888887777777777.47778*******999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2710.39
//
Query:       EHU00575.1  [L=303]
Description: patatin-like phospholipase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-24   86.5   0.1    6.1e-24   85.3   0.1    1.6  1  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1   3.4e-28   6.1e-24       1     201 [.       8     165 ..       8     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 3.4e-28
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 L+l+ G ++g +++g+++aL + +g+++d+++G S+GA++++++   r p +  +++++++++++  r               +  +++ggl+ +e   
  EHU00575.1   8 LALGSGAAKGWAHIGVIEAL-ESAGINIDVVAGCSIGALVGAAYVNHRLPHM--KKWVSAFSYWDVIRL-------------MDLSWQRGGLLRGERVF 90 
                 899*****************.**************************99999..999999999988888.............9**************** PP

     Patatin 100 ellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldgelyvDGGilsNv 198
                 + +r+++++++++++ +++g +                            ++ ++ +e   ++++l +avraS+++Pgl+ppv ++g ++vDG++++ v
  EHU00575.1  91 NHVRQLITHDAIESCGKPFGVV---------------------------ATNLSTGRELWLTEGELHQAVRASCSMPGLLPPVGYNGYWLVDGAVVNPV 162
                 **********************...........................78999******************************************999 PP

     Patatin 199 Pil 201
                 Pi 
  EHU00575.1 163 PIS 165
                 985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2252.96
//
Query:       EHU00576.1  [L=151]
Description: hypothetical protein CKS_2734 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-30  105.4   0.3    2.5e-30  105.2   0.3    1.1  1  UPF0225   UPF0225 domain
    1.2e-11   44.2  29.9    8.1e-07   28.8  11.4    2.2  2  SEC-C     SEC-C motif


Domain annotation for each model (and alignments):
>> UPF0225  UPF0225 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.3   2.8e-34   2.5e-30       1      99 []      29     127 ..      29     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 2.8e-34
     UPF0225   1 taeaLmRsRysAyvlkdadYlvatthpetreaeeeaeleatakkvkflkleiletekeekedeatVeFkarlkekgkektlhErSrFvredgrWlYvdg 99 
                 +ae+LmRsRy Ayv++d+dYlvat+hp++r  + ++ +++++  +++l+l+i ++++++++de++V+F ar+ e+g ++++ ErSrF red rW+Yvdg
  EHU00576.1  29 SAEQLMRSRYCAYVKQDVDYLVATWHPTSRVPALADLVTESFAGTEWLSLNITRCDEGRHKDESFVTFFARFAENGVNRAMYERSRFLREDSRWYYVDG 127
                 59********************************9***************************************************************8 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  10.4   1.7e-08   0.00016       1      19 []       1      19 [.       1      19 [. 0.95
   2 !   28.8  11.4   9.1e-11   8.1e-07       1      18 [.     134     151 .]     134     151 .] 0.99

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.7e-08
       SEC-C  1 RNdpCPCGSGkKYKkCCgp 19
                +++ CPC SGk+Y  CC+p
  EHU00576.1  1 MSESCPCCSGKQYSLCCQP 19
                7899*************98 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 9.1e-11
       SEC-C   1 RNdpCPCGSGkKYKkCCg 18 
                 RNd CPCG  kKYKkCCg
  EHU00576.1 134 RNDRCPCGADKKYKKCCG 151
                 9****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1363.05
//
Query:       EHU00577.1  [L=282]
Description: formyltetrahydrofolate hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-51  174.9   0.0    1.7e-51  174.6   0.0    1.1  1  Formyl_trans_N  Formyl transferase
    4.6e-07   29.5   0.0    1.1e-06   28.3   0.0    1.7  1  ACT             ACT domain


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   1.9e-55   1.7e-51       2     181 .]      88     264 ..      87     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 1.9e-55
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHH CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpkel 96 
                     ++v+l+++++++l +ll++   g+l+ ++++v++n+++++  +  e+++ip+ ++++++l+++ ++++++a+e++ +++d++vla+ym++l++ +
      EHU00577.1  88 RVVILVTKEAHCLGDLLMKSAFGGLDMEIAAVIGNHETLR--SLVERFDIPFVLVSHEGLSRE-EHDNKMADEIDRYQPDYVVLAKYMRVLTPGF 179
                     9*************************************99..999**************9876.9****************************** PP

                     HHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  97 vqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                     vq+++++i+niH+S+LP+f Ga+++++a+e+G+k  G+t h+v+++lD+G+i++q+ +++++ +t+ee+++  +d+e+++l +al
      EHU00577.1 180 VQRYPNQIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVINVDHSYTAEEMMRAGRDVEKNVLSRAL 264
                     *********************************************************************************9986 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.2e-10   1.1e-06       2      63 ..      10      70 ..       9      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.2e-10
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63
                vlr+ +pD +Gl+a++++++ ++ +Ni+  + + ++++ +++++ +++++  ++ ++l+ l 
  EHU00577.1 10 VLRTICPDAKGLIAKITNICYKHELNIVQNNEFVDHRT-GRFFMRTELEGIFNDNTLLADLD 70
                799**********************************8.99999999999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2503.09
//
Query:       EHU00578.1  [L=268]
Description: exonuclease III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-21   77.4   0.1    1.7e-21   76.8   0.1    1.2  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.044   13.6   0.0       0.89    9.4   0.0    2.2  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   1.9e-25   1.7e-21       2     233 .]       5     259 ..       4     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.9e-25
                    EEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefndl 97 
                    ++N+ng         +r  +l +l++++++Dv+gLQE++  +  ++++  a  g++ +      ++g++g++g+a+l + ++ s+ r  + + +d 
     EHU00578.1   5 SFNINGL-------RARPHQLEALVEKHQPDVIGLQETKVHDDMFPLEDVAKLGYNVF------YHGQKGHYGVALLTKVQPVSVRRGFPGDGEDA 87 
                    8*****5.......368999*************************9999998555555......3589*****************88888888888 PP

                    SGCEEEEEEEEEEEEEEE.........CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH........ CS
                    xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
  Exo_endo_phos  98 vaalrreplaakleqlni.........ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap........ 176
                      +l++     +  + +           + ++ + + +++++++l+  +  ++  ++pv+++GD+N  ++d d    ++ +++   +         
     EHU00578.1  88 QRRLIMAEIPSPIGDITLingyfpqgeSRDHPTKFPAKEKFYRDLQSYLSESLTADKPVLIMGDMNISSTDLDIGIGEDSRKRWLRTGkcsflpee 183
                    888888888888888888*************************************************77777777777777776666677777666 PP

                    ......H................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ......x................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ......v................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                                                ++ ++      + g r+D  las++la +  ++++++  + +   +++SDH
     EHU00578.1 184 rewmdrLlswglvdtwrahnpdtCDRFSWFDYRSKGFDDNRGLRIDLLLASTGLASHCIESGIDYDIRGM---EKPSDH 259
                    666555055667778888999999999************************************8887776...8****9 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0001      0.89       4      44 ..     106     157 ..     103     169 .. 0.70
   2 ?    2.0   0.0     0.019   1.7e+02      88     118 ..     226     262 ..     197     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0001
  Exo_endo_phos_2   4 isvYippsd.........elenlestlekllselksp..kiiilGDfNakhp 44 
                      i+ Y p+ +         + e++ ++l+++lse  +   +++i+GD+N  ++
       EHU00578.1 106 INGYFPQGEsrdhptkfpAKEKFYRDLQSYLSESLTAdkPVLIMGDMNISST 157
                      566666666666666676556666666666666555456*********9876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.019
  Exo_endo_phos_2  88 stiDltltsdnlals......kleleeedlgSDHrpi 118
                        iDl l+s+ la +        ++   +  SDH p+
       EHU00578.1 226 LRIDLLLASTGLASHciesgiDYDIRGMEKPSDHAPV 262
                      569**********997666665555666666888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2200.82
//
Query:       EHU00579.1  [L=96]
Description: hypothetical protein CKS_2729 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-24   84.8   3.8    3.1e-24   84.3   3.8    1.3  1  DUF1496   Protein of unknown function (DUF1496)
  ------ inclusion threshold ------
      0.013   15.5   0.2      0.017   15.1   0.2    1.3  1  IGFL      Insulin growth factor-like family


Domain annotation for each model (and alignments):
>> DUF1496  Protein of unknown function (DUF1496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   3.8   3.5e-28   3.1e-24       3      53 .]      42      96 .]      40      96 .] 0.97

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 3.5e-28
     DUF1496  3 itqgknvn....rvCyYedkaYseGAvikvegvlLqCsrdekfegngeLiWkelk 53
                +tqg+n++    ++C++e+++Y+eGAv+k egvlLqC+rdek++g+++LiWk++k
  EHU00579.1 42 WTQGQNNQqncmQCCIFENRNYTEGAVVKSEGVLLQCARDEKSLGTNNLIWKIVK 96
                9******9********************************************986 PP

>> IGFL  Insulin growth factor-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.9e-06     0.017      13      66 ..      19      72 ..       5      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-06
        IGFL 13 dkiynPleqCCdddtvlslnrtrlCGpnCtfwpCfelCCpesvgaqkkfvvklk 66
                +  y P+    + d+++++ r      + + + C++ C  e  + ++ +vvk  
  EHU00579.1 19 QANYHPSTGGTNTDVIVDMPREAWTQGQNNQQNCMQCCIFENRNYTEGAVVKSE 72
                4579***************999988888999********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 788.16
//
Query:       EHU00580.1  [L=638]
Description: DNA topoisomerase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-113  380.2   0.0   1.5e-113  379.9   0.0    1.0  1  Topoisom_bac  DNA topoisomerase
      4e-16   59.1   0.0      1e-15   57.8   0.0    1.8  1  Toprim        Toprim domain
  ------ inclusion threshold ------
      0.041   14.0   0.0       0.42   10.8   0.0    2.3  2  FYRC          F/Y rich C-terminus


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.9   0.0  2.6e-117  1.5e-113       6     413 .]     158     593 ..     153     593 .. 0.92

  Alignments for each domain:
  == domain 1  score: 379.9 bits;  conditional E-value: 2.6e-117
  Topoisom_bac   6 lvdaaeaRrelDwliGinlsrlltk...klkg.kkvlsaGRVqtptLaliveRereienFvpeeyweveatl.kkekkeke.........kkkkkkk 88 
                   l  +a aR+++Dwl+Gin++r++t+   ++ g ++vls+GRVqtp+L+l+v+R++eienFvp++y+ev+a++ + ++ ++          + +++++
    EHU00580.1 158 LCVSALARARADWLYGINMTRAWTLmgrNA-GyDGVLSVGRVQTPVLGLVVRRDEEIENFVPKDYFEVKAHIvTPDDIRFVanwvpseacEPWQDEE 253
                   67899********************87444.359*************************************954444444489*******99***** PP

  Topoisom_bac  89 erikdkeeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlsee..aelkailea 183
                   +r+ +++ ae +++++  + a+v+++++k++++ +plpf++++Lq ea++++glsa+ +l+i+q+LYe+++litYpR+ds++l++e  a   a+l+a
    EHU00580.1 254 GRLLKRSLAEHVVARITGQPARVTAYSDKRESDTAPLPFSLSALQIEAAKRFGLSAQAVLDICQRLYETHKLITYPRSDSRYLPDEhfAGRHAVLNA 350
                   ****************7779******************************************************************98667899999 PP

  Topoisom_bac 184 lakkygkeylefaekllkktkkksvvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktile 280
                   ++ +  + ++++  +  +++k+ +++++kkv+aH+AI+Pt++++   +l+d+e+++Y lI+r++l+++ +da +++ t++l++++ +f a+ + + e
    EHU00580.1 351 IQVHQPDLTSPAEFD--ADRKN-RCWDDKKVDAHHAIIPTARASA-VRLNDNEQQVYGLIARQYLMQFCPDAMFRKCTIELDIAGGKFVAKARFLAE 443
                   998755544443333..33443.389**************88775.89************************************************* PP

  Topoisom_bac 281 kGfkkvykeekkeeeee..elpelkegeevkvkeveleekkTkppkryteasLikameka.................giGtpaTraeiieklvergY 358
                   +G++++  +++ +ee++   lp ++eg+ + +++ e+ +k+T+pp ++t+a+L++am                    g+Gt+aTra iie l++r +
    EHU00580.1 444 AGWRALLGSKERDEENDgmPLPVVAEGDVLLCEHGEVLAKQTQPPRHFTDATLLSAMTGIarfvqdkelkkvlratdGLGTEATRAGIIELLFRRSF 540
                   *******887777775599****************************************************************************** PP

  Topoisom_bac 359 verkkkslvptelGkalvellekfkdlvspelTaeleekLdeIaegkadakevld 413
                   +++k+++++ t++Gkal++ l+  +  + p++Ta++e++L +I+e    ++e+++
    EHU00580.1 541 LQKKGRYIHSTDTGKALIHSLP--DLAARPDMTAQWESTLTRISEKACRYDEFMQ 593
                   ***99****************9..5699***********************9995 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.7e-19     1e-15       2     101 ..       3     135 ..       2     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.7e-19
                 EEEESSHHHHHHHHHTHT............STEEEEEEESSSSEEEHS.................TTEEEEE..ECTTTHHHHHHHHHHHHHHSEEEEE CS
      Toprim   2 lvivEgpsdaktiakalg............sgfqavtaslGhildlet.................efkpvye..eiedkkkvlkalkelakradeiila 69 
                 l+i+E+ps  ++ia +l             +++q+vt+++Gh+l++++                 ++++++    +++  k+lk+++ l+ +ade++ a
  EHU00580.1   3 LFIAEKPSLGRAIADVLPkphrrgdgfiacGNDQVVTWCVGHLLEQAQpdaydgryarwsladlpIIPEKWRlqPRPSVAKQLKVVEGLLAQADEVVHA 101
                 9***************99******************************887777777777776655555555999************************ PP

                 CSSSHHHHHHHHHHHHHHT.HHHTT.TEEEEEES CS
      Toprim  70 tDpDreGeaiawellevlk.ellen.kigrvefs 101
                  DpDreG+ +  e+l++l+ ++ ++ k++r+ ++
  EHU00580.1 102 GDPDREGQLLVDEVLDYLQlPAEKRsKVQRCLIN 135
                 *******************866665678887776 PP

>> FYRC  F/Y rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     7e-05      0.42      41      80 ..     288     330 ..     274     335 .. 0.79
   2 ?   -0.0   0.0      0.17     1e+03      21      52 ..     570     601 ..     565     620 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7e-05
        FYRC  41 lk..lklfpesisGeemfGLsepaivrlieslpgaekctnY.k 80 
                  +   +l   +i+ ++ fGLs +a++ + + l + +k+ +Y +
  EHU00580.1 288 APlpFSLSALQIEAAKRFGLSAQAVLDICQRLYETHKLITYpR 330
                 44555556678999************************99953 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.17
        FYRC  21 atevWqkvlervqelrkeaglklklfpesisG 52 
                 +t+ W++ l+r++e+    ++ +++   ++sG
  EHU00580.1 570 MTAQWESTLTRISEKACRYDEFMQPLVHTLSG 601
                 6788*********9444443333444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.19s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 5376.75
//
Query:       EHU00581.1  [L=183]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-24   87.2   0.1    1.4e-24   87.0   0.1    1.0  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.12   11.9   0.0        1.4    8.4   0.0    2.1  2  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.1   1.6e-28   1.4e-24       3     169 ..       9     161 ..       7     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.6e-28
                     H--B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE- CS
  Nitroreductase   3 kRrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvliviv 97 
                     +RrS   + +  ++ e l++il+a++raP +g+lqpwrf++v + e r++l +++ ++++ ++ +++ +          ka +a ++ap++i + 
      EHU00581.1   9 NRRSASRLAEPAPSGEALDNILRAGMRAPDHGGLQPWRFIIV-ENEGRDRLSQLLEKAARDNQMDEKAIN---------KASQAPFRAPMIITV- 92 
                     799999999999******************************.89*****************99999885.........588************. PP

                     --TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE CS
  Nitroreductase  98 atldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavG 169
                         +  + +++  +++++++a++a++ +++aA a+G+  ++ +g+  ++++vr+ +g  +++ iv+++ +G
      EHU00581.1  93 ---VAHCEINHKVPRWEQIASASCAVMAMQMAAVAQGFNGIWRSGVWTDDPQVREAFGCREQDAIVGFLYLG 161
                     ...777889999*********************************************************999 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00016       1.4     142     187 ..      10      53 ..       5      81 .. 0.79
   2 ?    1.4   0.0     0.022     2e+02      91     137 ..     118     167 ..     114     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00016
                     ---HHHHBSS-GGGS-HHHHHHHHHHHTS--GGG----EEE.E-SS CS
  TM1586_NiRdase 142 rkpleelcevkeeelpewfkeileaarlAPsAlNqqpwrfelkddd 187
                     r++++ l e      +e +++il+a + AP     qpwrf +++++
      EHU00581.1  10 RRSASRLAEPA--PSGEALDNILRAGMRAPDHGGLQPWRFIIVENE 53 
                     56666666544..45899***********************99864 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.022
                     HHHHHHHTT-EEEEES--SST..............T-S-EEEEE-BS--- CS
  TM1586_NiRdase  91 lvLkltalGlgtcWvggtykk...kkakvelkkgeklvivIalGyaktkl 137
                     + + ++a+G++  W +g       +++++  ++++ +v ++ lG ++ k+
      EHU00581.1 118 MQMAAVAQGFNGIWRSGVWTDdpqVREAFGCREQDAIVGFLYLGTPQLKS 167
                     6788999*******988655444588889999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1363.43
//
Query:       EHU00582.1  [L=621]
Description: protease IV (signal peptide peptidase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-91  302.6   1.0    3.2e-48  163.6   0.1    2.8  3  Peptidase_S49  Peptidase family S49
    2.8e-06   27.3   0.3    9.4e-05   22.4   0.3    2.3  2  CLP_protease   Clp protease
     0.0019   17.8   0.2     0.0073   15.9   0.0    2.0  2  Peptidase_S41  Peptidase family S41
     0.0019   17.3   0.2     0.0036   16.4   0.2    1.4  1  SDH_sah        Serine dehydrogenase proteinase
  ------ inclusion threshold ------
      0.023   15.0   0.2       0.18   12.2   0.0    2.2  2  TED            Thioester domain


Domain annotation for each model (and alignments):
>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   1.5e+03      39      59 ..      63      83 ..      56      91 .. 0.90
   2 !  136.3   0.0   2.2e-43     8e-40       2     147 ..     143     297 ..     142     303 .. 0.92
   3 !  163.6   0.1   8.9e-52   3.2e-48       2     153 ..     395     545 ..     394     546 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
                   EE---EEEEEEE-HHHHHHTT CS
  Peptidase_S49 39 vgsiGvitqllnlenlldklg 59
                   v++ Gv  +++ ++n l k+g
     EHU00582.1 63 VDLTGVLVDKPSVSNRLSKIG 83
                   899***************998 PP

  == domain 2  score: 136.3 bits;  conditional E-value: 2.2e-43
                    HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC..CTTSS--HHHHHHHHHHHHHH CS
  Peptidase_S49   2 akkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksav..slrrelteeereilqrlldet 95 
                    +++++kPv+a+++++++ ++Yylas a ki+++p++ v+++G++t++l+++ lldkl+v+ +v+++G+yksav  +lr+++++++r++ +r+++++
     EHU00582.1 143 FRDSGKPVYALGDSYSQ-AQYYLASYATKIYLSPQGTVDLHGFATNGLYYKTLLDKLKVNSHVFRVGTYKSAVepFLRDDMSPAARDADSRWIGQL 237
                    899**************.****************************************************************************** PP

                    HHHHHHHHHHHHTS-HHHHHCHHCC........HEEEHHHHHHTTSSSEETSHHHHHHHH CS
  Peptidase_S49  96 yqqFvqtVaknRnlsveqvdkiAeg........rvltgqqAlklgLvdelgtvddavael 147
                    +q++++tV++nR+++ eq+ + A +        +  tg+ Al+++Lvd lg+  da + l
     EHU00582.1 238 WQNYLNTVSANRQITPEQLFPGAAAiiaglqavKGDTGKYALDNKLVDVLGSRADADQAL 297
                    ***********************9888444333444677889999999999998886665 PP

  == domain 3  score: 163.6 bits;  conditional E-value: 8.9e-52
                    HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHH CS
  Peptidase_S49   2 akkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyq 97 
                    ak+a+kP+v+s++++aaSggY++++ a++i+a+pst++gsiG++  + +len+l+++gv++++v+++ ++++   +++l+ee ++ +q  +++ y 
     EHU00582.1 395 AKAAGKPIVVSMGGMAASGGYWISTPASYIIASPSTLTGSIGIFGVINTLENSLASIGVHTDGVATSPLADV-ASTKALPEEVQQLMQLTIENGYH 489
                    6899*******************************************************************9.77899****************** PP

                    HHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHC CS
  Peptidase_S49  98 qFvqtVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvddavaeleelakv 153
                    +Fv  Va +R+ + eq+d+iA+g+v+tg++A+++gLvd lg +ddav++++elakv
     EHU00582.1 490 NFVGLVATSRHKTPEQIDAIAQGHVWTGSDAKANGLVDALGDFDDAVKKAAELAKV 545
                    ******************************************************98 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3   2.6e-08   9.4e-05      44      94 ..     366     419 ..     335     430 .. 0.82
   2 ?    2.4   0.0     0.036   1.3e+02     139     178 ..     491     529 ..     472     532 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.6e-08
                   -SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS..-EEEEEE.EEEETHHHHHHH CS
  CLP_protease  44 dpdkdillyinspGGsvtaglaIydtmqyikp..dvsticl.GlaaSmgsllla 94 
                    ++k i l +nspGGsvta+ aI   ++  k+  + +++ + G+aaS g  + +
    EHU00582.1 366 PKIKAIILRVNSPGGSVTASEAIRSELAAAKAagKPIVVSMgGMAASGGYWIST 419
                   57899**********************99987223344444699***9988876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.036
                   HHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE CS
  CLP_protease 139 lneilakhtgqslekiekdldrdtflsaeeAveyGLidev 178
                    + ++a + ++++e+i + + + ++ + ++A++ GL+d  
    EHU00582.1 491 FVGLVATSRHKTPEQIDA-IAQGHVWTGSDAKANGLVDAL 529
                   556778888999999986.5556667899*********86 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-06    0.0073      17      81 ..     101     169 ..      90     201 .. 0.81
   2 ?   -2.7   0.0       1.1   3.9e+03      39      55 ..     376     392 ..     355     404 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
                    HHHHHHHHHHH.TTSSEEEEE-TTB-EB...EHHHHHHHHHCCSSSSEEEEEECTTSEEEEEEHTCSS- CS
  Peptidase_S41  17 elakalkelkk.knvkglilDlRnNgGG...lldeavelaslflddglivstrgrdgkkkkksktekas 81 
                    ++ +a+++ k  +n+kgl+lDlR+  GG   +l+++ ++++ f d+g+ v+  g  +++ +++ +++a+
     EHU00582.1 101 DVVDAIRQAKGdSNIKGLVLDLRDFAGGdqpSLQYVGKALREFRDSGKPVYALGDSYSQAQYYLASYAT 169
                    677888899989****************66668999999999999999888888888888666655554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
                    TB-EBEHHHHHHHHHCC CS
  Peptidase_S41  39 nNgGGlldeavelaslf 55 
                    n +GG+++++ ++ s +
     EHU00582.1 376 NSPGGSVTASEAIRSEL 392
                    56899999988776655 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2     1e-06    0.0036      82     154 ..     359     434 ..     352     451 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1e-06
     SDH_sah  82 lrairltpkdkpidliihtpGGlvlaatqiakalkehkaktrviv...phyamsGGtlialaadeiildenavlGp 154
                 +r  rl pk k i l + +pGG v a++ i   l + ka  + iv      a sGG  i+  a  ii  + ++ G 
  EHU00582.1 359 IRDARLDPKIKAIILRVNSPGGSVTASEAIRSELAAAKAAGKPIVvsmGGMAASGGYWISTPASYIIASPSTLTGS 434
                 68899******************************999987766511145799***********999988877775 PP

>> TED  Thioester domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.34   1.2e+03       7      42 ..     305     340 ..     298     371 .. 0.70
   2 ?   12.2   0.0     5e-05      0.18      20      80 ..     467     529 ..     433     554 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.34
         TED   7 agkgfpssedgaa.....nkasklnkenankilwildngYp 42 
                   ++ ++     +     ++ +++ ++++++i+ il+ g  
  EHU00582.1 305 KQNNDYR-----NvsiydYNVKQDASQQKGNIAVILASGAI 340
                 3333333.....14455588889999999999999998865 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5e-05
         TED  20 nkasklnkenankilwildngYpnk..lseeeggltdddayaaTQaAIWyftdgvdasgetss 80 
                  ++++l++e+++ ++  ++ngY n   l + +++ t ++++a+ Q  +W  +d   +  +++ 
  EHU00582.1 467 ASTKALPEEVQQLMQLTIENGYHNFvgLVATSRHKTPEQIDAIAQGHVWTGSDAKANGLVDAL 529
                 45677799999****************99999999**************99954442222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 5148.56
//
Query:       EHU00583.1  [L=337]
Description: cytoplasmic L-asparaginase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-64  214.6   0.0    1.3e-63  214.1   0.0    1.2  1  Asparaginase    Asparaginase, N-terminal
    4.3e-32  110.7   0.0    9.6e-32  109.6   0.0    1.6  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   0.0   1.4e-67   1.3e-63       1     184 [.       5     188 ..       5     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 1.4e-67
                   EEEEEEEESGGGEEECTTS--CCEES-HHHHHCCTTTCCCCSEEEE.........EEEEEE-GGG--HHHHHHHHHHHHHHCCT-SEEEEE--STTH CS
  Asparaginase   1 kvlvlatGGTiasekdesggalapalsaeellealpelekiaeles.........eqlanidSsnmtpadwlklaeaieealeeydgfVvlhGTDTl 88 
                   +++v +tGGTi+++++++g  + p   +++ l++   l+k++e++          e+ + idSs+mtp+dw+ +ae+i+ ++++ydgfV+lhGTDT+
    EHU00583.1   5 NIYVAYTGGTIGMQRSAQG--YIP---VSGHLQQK--LAKMPEFHRpempdftihEYQPLIDSSDMTPQDWQSIAEDIRLNYDRYDGFVILHGTDTM 94 
                   589***************9..777...66666666..677777777777889999****************************************** PP

                   HHHHHHHHHHEES.SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHCGGTTSECEEEETTEEEETTTEEE-BSSSSS-EEETTT--SEEEETTEEE CS
  Asparaginase  89 aytAsaLslmlknldkpvvltGsqrplselrsDgpeNlldAllvaasseriagvlvvfngkllranrvtKvhtssldaFespnlgplaevegskvk 184
                   a+tAsaLs+ml+nl+kpv++tGsq+pl elrsDg++Nll++l+vaa++ +i++v+++fn++l+r+nr+tK h++ ++aF spnl++l e  g +++
    EHU00583.1  95 AFTASALSFMLENLAKPVIVTGSQIPLAELRSDGQQNLLNSLYVAANY-PINEVTLFFNNTLYRGNRTTKAHADGFNAFASPNLSALLEA-GIHIR 188
                   ************************************************.**************************************998.66665 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   1.1e-35   9.6e-32       3     114 .]     213     326 ..     211     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.1e-35
                     EEEE--TT--HHHHHHHHHTT--EEEEEEBTTTB--H..HHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHH CS
  Asparaginase_C   3 vvlklhpgmdtkvlkallkkgakGvvlegtGvGnlps..allealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaari 95 
                      v++++pg++++v++++l++ +k+++l ++GvGn+p+  ++l +l++a +rgivvv+ +qc+sg v+++ y++g++le +gvis+ d+t eaa +
      EHU00583.1 213 GVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQnaEFLSELQQASERGIVVVNLTQCISGKVNMGGYATGNALEHAGVISGFDLTVEAALT 307
                     6899********************************999******************************************************** PP

                     HHHHHCTT---HHHHHHHH CS
  Asparaginase_C  96 kLmlllgkgldpaevrklf 114
                     kL +ll++ l+++++r+ +
      EHU00583.1 308 KLHYLLSQDLSSDQIRAKM 326
                     ****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2508.41
//
Query:       EHU00584.1  [L=202]
Description: nicotinamidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-33  113.9   0.0    1.1e-32  113.6   0.0    1.1  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   6.2e-37   1.1e-32       2     171 ..       4     202 .]       3     202 .] 0.96

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 6.2e-37
  Isochorismatase   2 alvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvhe...............leevkgdlderkaaphfkpgttgaelvp 80 
                      al++iD+qndf+++g  +++e + +ve +n+ ++a++++g  v++ +d h+               +    + l++ +++ h ++ + ga+++p
       EHU00584.1   4 ALIIIDIQNDFCPGGPMAVKEGDHTVEVANRYARAFHENGECVVALQDWHPadhgsfasvsgepvyTLGELNGLPQIWWPDHGVQHSAGADFHP 97 
                      9**************************************************************999788888889999**************** PP

  Isochorismatase  81 elaplegdvvvdKt......rfsaf......agtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaals..pelhdaal 160
                       l     d v++K        +saf       +t+ld +L+++ i+++v  G+atd+CV+ +++dal+lGy+v vv+ ++ +++  pe+ d al
       EHU00584.1  98 GLDRSLFDAVFHKGqdqdvdSYSAFfdnghrRKTELDSWLRARDITHLVMLGLATDYCVKYSVLDALELGYQVEVVAAGCRGVNlnPEDSDIAL 191
                      ****99*******99999***************************************************************99877999***** PP

  Isochorismatase 161 krlkqafatvi 171
                      +++++++a++i
       EHU00584.1 192 AQMAAQGAVII 202
                      ****9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1599.24
//
Query:       EHU00585.1  [L=93]
Description: uncharacterized DUF1315 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-27   94.4   0.4      4e-27   94.1   0.4    1.0  1  DUF1315      Protein of unknown function (DUF1315)
      0.004   17.2   0.1     0.0067   16.5   0.1    1.4  1  LZ3wCH       Leucine zipper with capping helix domain
  ------ inclusion threshold ------
      0.069   12.1   0.0      0.076   12.0   0.0    1.1  1  PAP_central  Poly(A) polymerase central domain


Domain annotation for each model (and alignments):
>> DUF1315  Protein of unknown function (DUF1315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.4   6.7e-31     4e-27       2      74 ..       7      82 ..       6      88 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 6.7e-31
     DUF1315  2 ellasltpevyqrlkqAvElGkWpdGrklteeQretcmqavmvyeakhlkeeerv.....GyikkkskeGeelkkeee 74
                ++l+++tpe+y+rl +AvE+GkWpdG++lt++Qr+ ++q+vm+++a++++  +++     G++++ksk+  +lk+e+ 
  EHU00585.1  7 AMLDAMTPEIYERLMTAVETGKWPDGVALTQQQRDNSLQLVMMWQARNNDAPQHMtigknGEMVTKSKK--QLKEEFG 82
                79*******************************************************************..9999875 PP

>> LZ3wCH  Leucine zipper with capping helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.1e-06    0.0067      37      51 ..      72      86 ..      68      90 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
      LZ3wCH 37 kskkelneefgIetD 51
                kskk+l+eefgIe+D
  EHU00585.1 72 KSKKQLKEEFGIEPD 86
                89************9 PP

>> PAP_central  Poly(A) polymerase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.3e-05     0.076     148     197 ..      12      61 ..       7      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxx RF
  PAP_central 148 aastlvskfFlvlskWkwpqpvlLkeieekee.p.lrvWdpkvnksdrahlm 197
                  ++  + +++ + +++ kwp  v L++ +++++ + + +W+ + n++   ++m
   EHU00585.1  12 MTPEIYERLMTAVETGKWPDGVALTQQQRDNSlQlVMMWQARNNDA--PQHM 61 
                  566788899999999***********99977423466***996544..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 729.57
//
Query:       EHU00586.1  [L=136]
Description: methionine sulfoxide reductase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-52  176.9   0.0    1.6e-52  176.7   0.0    1.0  1  SelR            SelR domain
  ------ inclusion threshold ------
      0.017   15.4   0.1      0.039   14.2   0.1    1.7  1  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr
      0.023   14.4   0.3       0.54   10.0   0.1    2.2  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
      0.082   13.1   0.8         11    6.3   0.2    2.3  2  zf-B_box        B-box zinc finger


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7   0.0   3.6e-56   1.6e-52       4     120 ..      12     127 ..       9     128 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.7 bits;  conditional E-value: 3.6e-56
                 CTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEECTSS CS
        SelR   4 kkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFedgp 102
                 ++Lt++q +v++++gte+p++g++ ++k++G+y+c vc++pLf setk+dsgcGwpsF+e++++ea+++ +d+s+gm+r+e++c +cd+hlGhvF dgp
  EHU00586.1  12 AQLTEMQRYVTQQRGTEPPYSGALLHNKQEGIYHCLVCNAPLFLSETKYDSGCGWPSFYEPVSDEAIRYLEDNSHGMQRIEIRCGNCDSHLGHVFPDGP 110
                 68************************************************************************************************* PP

                 SSS.SEEEEE-CCCEEEE CS
        SelR 103 kpttgkrycinsvslkfk 120
                 +pt g+ryc+ns+sl+f+
  EHU00586.1 111 QPT-GERYCVNSASLNFT 127
                 *95.************96 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   8.7e-06     0.039       3      75 ..      44     112 ..      42     135 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.7e-06
                   EEETTTS-EEEECCCEEEEECCCEEEES---CCCEE.EECEEEETTSTTEEEEEEEETTT--EEEEEEEECSCC CS
  Yippee-Mis18   3 fqCkkCktilgdslqlvsegralnivvlkkvtrnvv.vgkelvtdeegkctystlsCkgCnsvlGwkYksteee 75 
                   ++C  C+++l +s    ++g  +   ++++v+++ + + +  ++      +  +++C +C+s+lG ++ + ++ 
    EHU00586.1  44 YHCLVCNAPLFLSETKYDSGCGWPS-FYEPVSDEAIrYLEDNSHG----MQRIEIRCGNCDSHLGHVFPDGPQP 112
                   7899999999999999998888554.5666666555044444444....77899*************9887765 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.026   1.1e+02      41      52 ..      40      51 ..      32      53 .. 0.79
   2 ?   10.0   0.1   0.00012      0.54      12      49 ..      82     120 ..      75     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.026
  zinc_ribbon_10 41 eevkyrCpkCga 52
                    +e  y C  C+a
      EHU00586.1 40 QEGIYHCLVCNA 51
                    5668******97 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00012
  zinc_ribbon_10  12 ddetsaknryalICskChshnGlapkeeleev.kyrCpk 49 
                     +d+++ ++r  + C +C sh G + ++ ++++ + +C +
      EHU00586.1  82 EDNSHGMQRIEIRCGNCDSHLGHVFPDGPQPTgERYCVN 120
                     577788999*************99988888877666665 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0024        11       9      25 ..      37      53 ..      35      53 .. 0.90
   2 ?    5.0   0.0    0.0059        27       8      25 ..      85     102 ..      84     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0024
    zf-B_box  9 HknkpatlfCedCqqpl 25
                H++++ +++C +C++pl
  EHU00586.1 37 HNKQEGIYHCLVCNAPL 53
                889999********997 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0059
    zf-B_box   8 eHknkpatlfCedCqqpl 25 
                  H+++++++ C +C+++l
  EHU00586.1  85 SHGMQRIEIRCGNCDSHL 102
                 6999999999**999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1071.95
//
Query:       EHU00587.1  [L=332]
Description: glyceraldehyde-3-phosphate dehydrogenase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-71  237.0   0.0    9.2e-71  236.6   0.0    1.2  1  Gp_dh_C       Glyceraldehyde 3-phosphate dehydrogenase, C-ter
    2.6e-42  143.3   1.3    1.5e-41  140.8   0.3    2.1  2  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b
    0.00032   20.8   1.7     0.0027   17.8   1.7    2.4  1  DapB_N        Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.014   14.7   0.0      0.081   12.3   0.0    2.0  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.085   13.0   0.0       0.14   12.3   0.0    1.3  1  DUF2656       Protein of unknown function (DUF2656)


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   0.0   2.6e-74   9.2e-71       1     158 []     155     312 ..     155     312 .. 1.00

  Alignments for each domain:
  == domain 1  score: 236.6 bits;  conditional E-value: 2.6e-74
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Laplakv+ndkfgi++glmttvha+t++Qk++Dgps+kd+r +r a++niip+stgaakavg+Vlpel+gkl+g+A+rVPtpnvsvvdl+v+lek++++
  EHU00587.1 155 LAPLAKVINDKFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASY 253
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 +e++aa+k+aaeg++k++l+y e+++vs+D++g+  +s+fdak++i++++n+vk+v+wy
  EHU00587.1 254 KEICAAIKAAAEGEMKDVLGYVEDDVVSTDFNGEVLTSVFDAKAGIALNDNFVKLVSWY 312
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.3   4.2e-45   1.5e-41       1     100 [.       3     102 ..       3     103 .. 0.98
   2 ?    1.0   0.0      0.15   5.4e+02      34      81 ..     266     316 ..     245     327 .. 0.72

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 4.2e-45
                 CEEEEESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS-- CS
     Gp_dh_N   1 vkvainGfGRIGrlvlralleekelevvaindltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvft 99 
                 +kv+inGfGRIGr+v+ra+ +++++e+vaindl d++++ay+lkyDs+hgrf+g+ve+++ alvvngkki+v+aekdp++l+w+e+gvd+V e+tG+f 
  EHU00587.1   3 IKVGINGFGRIGRIVFRAAQQRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVQDGALVVNGKKIRVTAEKDPANLKWGEVGVDVVAEATGIFL 101
                 69***********************************************************************************************98 PP

                 S CS
     Gp_dh_N 100 d 100
                 +
  EHU00587.1 102 T 102
                 6 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
                 S-HHHHHHHHHEETTTEC-SS-EEEE....TTEEEETTEEEEEE--SSGGGS CS
     Gp_dh_N  34 tdletlayllkyDsvhgrfkgeveae....eealvvngkkikvlaekdpeel 81 
                 ++++++   ++ D v   f+gev ++    ++ + +n++ +k+++  d +e 
  EHU00587.1 266 GEMKDVLGYVEDDVVSTDFNGEVLTSvfdaKAGIALNDNFVKLVSWYD-NET 316
                 677777788899999999999998877755666999999999887666.445 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.7   7.4e-07    0.0027       1     100 [.       3     121 ..       3     134 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.4e-07
                 EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHH..................HHSSSS--S-BEBSSHHHHHHH...-SEEEE-S-HH CS
      DapB_N   1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdag..................ellglgklgvavtddleevlek...advliDFTtpe 78 
                 ikv+++G+ Gr+G+ v +a+++++d+e+va  d  + ++ +  +                    +++ +k+ v+ ++d ++++     +dv+ + T   
  EHU00587.1   3 IKVGINGF-GRIGRIVFRAAQQRSDIEIVAINDLLDADYMAYMLKydsthgrfdgtvevqdgaLVVNGKKIRVTAEKDPANLKWGevgVDVVAEATGIF 100
                 79******.*********************987766555555444555566666666666654444444666666666665554445566777777777 PP

                 HHHHHHHHHHHTT-EEEE--SS CS
      DapB_N  79 avlenlklalekgvklViGTTG 100
                  + e+++  + +g k V+  TG
  EHU00587.1 101 LTDETARKHITAGAKKVV-LTG 121
                 777777766666555555.355 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.3e-05     0.081      38      70 ..       4      37 ..       2      54 .. 0.83
   2 ?   -0.6   0.0       0.2   7.3e+02      88     126 ..     110     148 ..     100     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
                  EEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlk.afgmkviaydrskk 70
                  +vGi G+GrIG+ v + ++   +++++a++   +
    EHU00587.1  4 KVGINGFGRIGRIVFRAAQqRSDIEIVAINDLLD 37
                  79****************9788999999887654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.2
                   HHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEES CS
  2-Hacid_dh_C  88 llaesDivslhlpltpetrhlinaeelakmkkgailiNt 126
                   + a +  v+l+ p +++t  ++  ++++k + + i+ N+
    EHU00587.1 110 ITAGAKKVVLTGPSKDDTPMFVRGANFDKYQGQDIVSNA 148
                   566788899999**********99999999988888776 PP

>> DUF2656  Protein of unknown function (DUF2656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.8e-05      0.14      85     120 ..      60      95 ..      14     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
     DUF2656  85 aapdiLilgglktsparssapdaLqeGeWGVdvVEt 120
                  +   L++ g+k   ++ ++p  L+ Ge GVdvV  
  EHU00587.1  60 VQDGALVVNGKKIRVTAEKDPANLKWGEVGVDVVAE 95 
                 45567999*************************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2653.50
//
Query:       EHU00588.1  [L=291]
Description: aldose 1-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-42  146.3   0.0    1.4e-42  146.0   0.0    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.0     8e-47   1.4e-42       3     284 ..      29     270 ..      27     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 8e-47
                  EEEEETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEETTEEEECCCCBTTTCEETBSGGGSB-EEEEE CS
  Aldose_epim   3 itlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdsyfgatlgrvanRianGeFeldGkpyqlpqneegknplHGgargreWeveev 100
                  i ++++ +++a ++l+GA+l+ +++ +  +++v+++sd+           ++l+ +a+R   G     G+p+++p++++   p+HG+ar++ W+++ +
   EHU00588.1  29 IIVSHP-RVRAAVTLQGAHLIAWQPSG--EKPVIWLSDK----------SPFLPGKAIR---G-----GVPICWPWFGPAGEPAHGFARNQSWTLSAH 105
                  567787.69******************..78********..........6*********...8.....****************************** PP

                  EE.TTEEEEEEEEEEETCHC...STSEEEEEEEEEEETTEEEEEEEEEEESSS-EEEEEEEEEEEETSSCTCTGGEEEEEEEEEEEECTTSGEEEEEE CS
  Aldose_epim 101 ke.ddgvtvslvlkpdgeeg...ypgdlevrvtytLnednelkieyeatndgkptpfnltnHtYFnlsgesidshelqieadeylevdeeliptgelk 194
                   e +dgv +++vl+ + + +   +p+d+++  +++L++++e+++e ++  ++     ++++H+YFn++    ds  +++++++   +d+        +
   EHU00588.1 106 DEnEDGVLLTFVLESTPQ-TlklWPHDFTLIARFRLGQHCEIELEAYGDYES-----TAALHSYFNVA----DSASVEVTGLGEHYIDK--------V 185
                  *************65555.4569*****************776666666665.....9**********....*********99999999........2 PP

                  ECTTCCCCCCSSEEHCSSETEEEEEEEESSCSEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT.SEECCEEESSECTCETCCCECHHHT CS
  Aldose_epim 195 dvkgtpfdfrqpkaigedlkglDhayllksklkaviidpdkksgiklevsttepalvvytgnflk.kylsreglaletqmlpdepnhpefp 284
                  + +++p +++ ++ ++e+   +D++++ ++ +  vi d   k++i++ ++++  ++v ++++     ++ +++ ++++ m+++e++++ +p
   EHU00588.1 186 K-DNQPGQSEGKQRFTER---VDRIFTAPK-DCSVINDLAGKRQIEVYHHHHS-DVVTWNPGVALsCSMPDMPNEGYKTMVCVETARISKP 270
                  2.3444544455555555...7********.999999999999***9999999.*******9999999*******************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2275.67
//
Query:       EHU00589.1  [L=283]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-55  188.8   0.0    1.4e-54  185.3   0.0    1.9  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.097   12.3   0.0       0.23   11.1   0.0    1.7  1  PreAtp-grasp  Pre ATP-grasp domain


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.0   1.6e-58   1.4e-54       2     291 ..      16     269 ..      15     271 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 1.6e-58
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +g+Gtw +g + + s+++ + +l++ l+aG +++DtAe+Y +g +ee++G alk    +r+e ++++Kv      ++++  k++ ++++e+sl+rL+
    EHU00589.1  16 IGIGTWYMGED-PASRQQEISALQAGLDAGLRLVDTAEMYAEGGAEEVVGDALKG---RRDEALLVSKV------YPWNAGKQDAIAACEASLRRLQ 102
                   9********98.*******************************************...***********......89999999************** PP

                   -S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGG CS
  Aldo_ket_red  99 tdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplgg 194
                   td++Dl+llH+   s+p + e+++a++ l+++ kira+GvSnf+ e ++++  ++++   +++qv y+l ++  e  ll+lc++  +p++ay+pl++
    EHU00589.1 103 TDRIDLYLLHW-RGSVP-LDETISAMQTLQQQDKIRAWGVSNFDSEDMDALwAETGGENCATNQVLYHLGSRGIEYDLLPLCRQRAMPVMAYCPLAQ 197
                   **********8.56889.9********************************88888899*************************************9 PP

                   .GTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHH CS
  Aldo_ket_red 195 .Glltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeld 290
                    G l+                          +l ++++l+++a+++g+++aql l++a+ +++ + +ip+as++ ++++n++al+++lsee+  +ld
    EHU00589.1 198 vGRLR-------------------------SQLFTDPALNAIARQKGITVAQLLLAWAI-RDGDVLAIPKASSLVHVRENAAALDITLSEEDCLRLD 268
                   77777.........................22357899*********************.9********************************9999 PP

                   H CS
  Aldo_ket_red 291 e 291
                   +
    EHU00589.1 269 R 269
                   7 PP

>> PreAtp-grasp  Pre ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.5e-05      0.23      13      48 ..     205     242 ..     181     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.5e-05
  PreAtp-grasp  13 mvgrl.lteeqrskagasaq.RlvWfardGDvlvlpva 48 
                   +++++ l++  r+k  ++aq  l+W +rdGDvl +p+a
    EHU00589.1 205 LFTDPaLNAIARQKGITVAQlLLAWAIRDGDVLAIPKA 242
                   555555555556666555551678*********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2090.94
//
Query:       EHU00590.1  [L=249]
Description: MltA-interacting protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-55  188.7   8.3    1.8e-55  188.5   8.3    1.0  1  MipA       MltA-interacting protein MipA
  ------ inclusion threshold ------
      0.027   14.6   6.7      0.039   14.1   4.3    1.9  2  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> MipA  MltA-interacting protein MipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   8.3     2e-59   1.8e-55       1     213 []      29     249 .]      29     249 .] 0.93

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 2e-59
        MipA   1 lGagagygps.ypgsddyellllPllfyegenfyldglsdggynlletdnfrlglslslslesgrdesda......lgdrktsleaGlfaeyrtqvgll 92 
                 lGa+++y++s y+g++d + l++P+++yege+f+++ l+ ggy+++++++ +l+lsl  s ++ + ++++      l++r+++l++G+++++++++g++
  EHU00590.1  29 LGASVIYAQSpYRGGQD-RYLPVPIINYEGEKFWFNTLQ-GGYYVWKDPQDQLSLSLLGSPQQYDPDDNDlgdmkgLDKRRMTLMGGVTYRHTDDWGII 125
                 7***********99875.789***************997.9********9899999888888887666668999999****************99***8 PP

        MipA  93 r...ladvsgahkGaea...lsasfslsgrwtlspgaglsyasskyndyyYGVsaaeaaasglpaYkagaglssvglglgasyrpltenwsllasasyt 185
                 r   l dv+++++G  +   + ++fs+ g++t++pg+g+ ++s+++n+yyYGVs +e+ ++g+++Y++++++s++ ++++asy+ +t++w++ +s++yt
  EHU00590.1 126 RtslLGDVLNNSNGIVWdltYLYRFSF-GDFTFTPGIGALWNSANQNRYYYGVSGNESDRTGIRRYHPDDSWSPY-VEMNASYS-ITPQWNASLSGRYT 221
                 878766********7779666677777.9**********************************************.*******5.************** PP

        MipA 186 rlsseiadSPlvesdnqvtaglgvaYrF 213
                 r++sei+dSP+v+++ q+t+++gv+Y+F
  EHU00590.1 222 RFASEIKDSPMVDKSGQFTVWTGVSYTF 249
                 ***************************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.014   1.3e+02      88     147 ..      64     123 ..      16     125 .. 0.59
   2 ?   14.1   4.3   4.4e-06     0.039      61     178 .]     111     249 .]      98     249 .] 0.72

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.014
   OMP_b-brl  88 pvnagyaf..nlsdsvlpyggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnws 147
                 +++ gy++  +  d++++ +++ ++++  + d ++ g+ +  ++  ++l+ Gv y+ +d+w 
  EHU00590.1  64 TLQGGYYVwkDPQDQLSLSLLGSPQQY--DPDDNDLGDMKGLDKRRMTLMGGVTYRHTDDWG 123
                 344555542244555888888888876..334334435777788888999999999999886 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.4e-06
   OMP_b-brl  61 egglsysgdkdysgs.....gktdikinllsvpvnagyafnlsds.vlpyggaGlgytkvevdvsgng..........asdsdtdfglglgaGveyala 143
                 +gg++y  ++d +       g    ++n     +++ y+f ++d  + p +ga  + ++++  + g+               d+ ++ +++  + y ++
  EHU00590.1 111 MGGVTYRHTDDWGIIrtsllGDVLNNSNGIVWDLTYLYRFSFGDFtFTPGIGALWNSANQNRYYYGVSgnesdrtgirRYHPDDSWSPYVEMNASYSIT 209
                 5555554444433334445444444567778899999****99*8788888888886666666666666668899999********************* PP

   OMP_b-brl 144 dnwslkaeYrytdlksdadnd...lknntfqv..gvgyrF 178
                 ++w+ +++ ryt + s+ ++    +k  +f+v  gv+y F
  EHU00590.1 210 PQWNASLSGRYTRFASEIKDSpmvDKSGQFTVwtGVSYTF 249
                 *****99999999887444444546667776655777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1740.43
//
Query:       EHU00591.1  [L=644]
Description: serine-protein kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.1e-177  588.9   0.0   4.2e-177  588.4   0.0    1.2  1  AAA_PrkA      PrkA AAA domain
    3.1e-72  243.3   1.6    6.2e-72  242.3   1.6    1.5  1  PrkA          PrkA serine protein kinase C-terminal domain
    3.1e-05   24.4   0.0    0.00012   22.6   0.0    2.0  2  AAA_16        AAA ATPase domain
     0.0025   17.8   0.1      0.023   14.7   0.0    2.5  3  AAA_5         AAA domain (dynein-related subfamily)
     0.0093   16.2   0.0      0.045   14.0   0.0    2.1  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.049   13.2   0.1          4    7.0   0.0    2.5  2  CobU          Cobinamide kinase / cobinamide phosphate guanyl
        0.1   11.9   0.0       0.34   10.2   0.0    1.8  2  Mg_chelatase  Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  588.4   0.0  1.6e-180  4.2e-177       2     358 .]      20     380 ..      19     380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 588.4 bits;  conditional E-value: 1.6e-180
    AAA_PrkA   2 slaeyleivkedksvaksaaerlldlikdkglelvdtaederlsrifsnetikkypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggG 100
                 +l+e+l+i+k+d+s++++aaerll++i+++  ++vdta+++rlsrifsn+++ +ypafe +f+G+ee+ie+iv+y+++aaq+lee+kqilyllGPvggG
  EHU00591.1  20 TLQEFLTICKQDRSAYANAAERLLMAIGEP--VMVDTAQEPRLSRIFSNRVMGRYPAFE-EFYGMEEAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGG 115
                 89****************************..99*************************.*************************************** PP

    AAA_PrkA 101 ksslverlkklleaapiyal....egsPvfeePlhli.peelrkkleeeygi...rlegllsPlatkrleeefgGdiekfkvekilfsilkrigiakve 191
                 kssl+erlk+l++ +piy+l    e+sPv+++Pl+l+ p+e++++le+eyg+   +l +++sP+a+krl ++fgGdi++fkv+k+++sil++ +iak+e
  EHU00591.1 116 KSSLAERLKSLMQRVPIYVLsadgERSPVNDHPLCLFnPQEDANILEKEYGVprrYLGTIMSPWAAKRL-HDFGGDITRFKVVKVWPSILEQLAIAKTE 213
                 ***********************99*****************************99*************.***************************** PP

    AAA_PrkA 192 PgdennqdisalvGkvdirkleeysendpdaysysGalnranrGllefvemfkadikvlhplltatqegnyksteklslipfdgiilahsnesewkkfk 290
                 PgdennqdisalvGkvdirkle++++ndpday ysGal+ran+G++efvemfka+ikvlhplltatqegny++te +s++pf+giilahsnesew +f+
  EHU00591.1 214 PGDENNQDISALVGKVDIRKLENHAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFR 312
                 *************************************************************************************************** PP

    AAA_PrkA 291 snkknealldrivvvkvPyclrvseekkiyekllkeseladahiaPetlevlarfsiltrlkeseksd 358
                 +nk+nea+ldr+++vkvPyclrvsee+kiyekll++sel+ a++aP tle+larfsil+rlk++++s+
  EHU00591.1 313 NNKNNEAFLDRVYIVKVPYCLRVSEEIKIYEKLLNHSELSTAPCAPGTLETLARFSILSRLKDPDNSS 380
                 *****************************************************************985 PP

>> PrkA  PrkA serine protein kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   1.6   2.4e-75   6.2e-72       1     257 []     382     636 ..     382     636 .. 0.97

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 2.4e-75
        PrkA   1 leKmklYdgeel..pdsleeedvkeLreeaeereGmsGispRyvikilsealssseakeekcinpldvlealeeglkeheviseeerekylefle.vvr 96 
                 ++Km++Ydge+l  +d++++ + +e+ + a+++eGm+G+s+R+++kils+++  + ++ e ++np++++++le+ +++ e++++++ ekyle l+ ++ 
  EHU00591.1 382 YSKMRVYDGESLkdTDPKAK-SWQEYHDYAGVDEGMNGLSTRFAFKILSRVF--NFDHAEVAANPVHLFYVLEQQIER-EQFPQDQAEKYLEHLKgYLI 476
                 58**********66566666.99****************************9..7889********************.******************** PP

        PrkA  97 eeydervkkevqeAllyseeeqieelvenYldhveayikkekvkdpiTgeelepd..erflrsiEeqigiseeakkdFRrevikelaasalaregkkid 193
                  +y+e++ ke+q+A+l+s++e+ ++ +++Y+ +++++i++++++dp+Tg+  +++  +++l++iE+++gis+  +kdFR+e++++++++++ ++g++++
  EHU00591.1 477 PKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDREslNAELEKIEKPAGISN--PKDFRNEIVNFVLRARAHNNGRNPN 573
                 ************************************************************************..9************************ PP

        PrkA 194 ytsierlkealekklfedvkdllklisstktpdkeqqkkveevverLvekfgYceacArevleY 257
                 +ts+e+l++++ekk+f+++++ll++is++++ ++++qkk++++v+r++ek gY+++++r ++e+
  EHU00591.1 574 WTSYEKLRTVIEKKMFSNTEELLPVISFNTKTSTDEQKKHDDFVDRMMEK-GYTRKQVRLLCEW 636
                 *****************************9*****************555.***********98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.6e-08   0.00012       1      63 [.      77     142 ..      77     168 .. 0.88
   2 ?   -2.5   0.0       2.2   5.7e+03      98     127 ..     530     560 ..     450     569 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.6e-08
      AAA_16   1 rlvGReeeleqLlsalervrsgrp...elvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                 +++G ee +eq+ s+l+ +++g +   ++++l G+ G GKssl+++l+ +l ++  +++l+++ +++
  EHU00591.1  77 EFYGMEEAIEQIVSYLKHAAQGLEekkQILYLLGPVGGGKSSLAERLK-SLMQRVpIYVLSADGERS 142
                 599**************999999999**********************.566664488888877766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
      AAA_16  98 rekleeala.avpelagaeasrllellkrll 127
                 re l ++l+ + +++  + ++++++++ +++
  EHU00591.1 530 RESLNAELEkIEKPAGISNPKDFRNEIVNFV 560
                 2222222221112222222266666666666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   8.1e+03      65      89 ..      40      64 ..       8      78 .. 0.49
   2 !   14.7   0.0   9.1e-06     0.023       3      31 ..     107     135 ..     105     142 .. 0.89
   3 ?   -0.3   0.0      0.38   9.7e+02      80     137 ..     267     323 ..     248     324 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
                G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5 65 egeilvlDEveraesevlnsLlsll 89
                e  ++ ++E  +++++  ++L +++
  EHU00591.1 40 ERLLMAIGEPVMVDTAQEPRLSRIF 64
                3334444444444444444444444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 9.1e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvq 31 
                  L+Gp G gKs+laerl+++++r   yv+
  EHU00591.1 107 YLLGPVGGGKSSLAERLKSLMQRVPIYVL 135
                 69*******************99888876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--....-TT-TTHHHHTT CS
       AAA_5  80 evlnsLlslleerrllleeggelvkaknddllerfrviatanpld...rslnelspalrsR 137
                 + +++L++ll   +    +g+e ++a +++      ++a +n+ +   ++ n+ ++a+++R
  EHU00591.1 267 APIKVLHPLLTATQEGNYNGTEGISALPFN----GIILAHSNESEwvtFRNNKNNEAFLDR 323
                 445666666666666666688888888854....556666666669998888889999988 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-05     0.045       4      31 ..     102     129 ..      99     159 .. 0.86
   2 ?   -2.5   0.0       2.2   5.6e+03      44      70 ..     539     566 ..     517     596 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqlde 31 
                 +++il++ G++G GK+ l++rl++  ++
  EHU00591.1 102 KKQILYLLGPVGGGKSSLAERLKSLMQR 129
                 899*******************998754 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
      AAA_22  44 fvtlpsst.sskdllrellralglelka 70 
                 +++ p++  ++kd+++e+++++ + + +
  EHU00591.1 539 KIEKPAGIsNPKDFRNEIVNFVLRARAH 566
                 5666666568999999999887765554 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0016         4       3      30 ..     108     135 ..     106     142 .. 0.82
   2 ?    3.4   0.0      0.02        50      41      65 ..     561     585 ..     555     634 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
        CobU   3 vtGgarSGKSefAeklaeeskekvvYiA 30 
                 ++G++  GKS++Ae+l + +++  +Y+ 
  EHU00591.1 108 LLGPVGGGKSSLAERLKSLMQRVPIYVL 135
                 79**************877777778885 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.02
        CobU  41 eRiarHrerRpaeWetveepldlae 65 
                  R ++H + R+ +W+ +e+ + + e
  EHU00591.1 561 LRARAHNNGRNPNWTSYEKLRTVIE 585
                 58899*************9554433 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.34      25      47 ..     106     128 ..      85     132 .. 0.84
   2 ?   -3.8   0.0       2.7   6.9e+03     155     189 ..     440     475 ..     439     477 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllp 47 
                   l l+Gp G GK+ la+rl+sl+ 
    EHU00591.1 106 LYLLGPVGGGKSSLAERLKSLMQ 128
                   7799****************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
  Mg_chelatase 155 amNpcpcgklkdke.kectcsekeierYlsklsgpl 189
                   a+Np    ++ +++ ++ +  +++ e+Yl++l g l
    EHU00591.1 440 AANPVHLFYVLEQQiEREQFPQDQAEKYLEHLKGYL 475
                   566666665554441445556889999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4446.22
//
Query:       EHU00592.1  [L=424]
Description: uncharacterized DUF444 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-185  617.7   3.9   1.3e-185  617.5   3.9    1.0  1  DUF444    Protein of unknown function (DUF444)


Domain annotation for each model (and alignments):
>> DUF444  Protein of unknown function (DUF444)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  617.5   3.9  7.2e-190  1.3e-185       2     421 .]       4     420 ..       3     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: 617.5 bits;  conditional E-value: 7.2e-190
      DUF444   2 iidrrlngknkslenrqRflrrvkeqikeavadavsersikdiskgekikipikdikepefeygkggeregVlpGnkefkeGdkierpeeggggggsge 100
                 +idrrlngknks++nrqRflrr+k+qik+++++a+++rs++d+s+ge+++ip++di+ep f++g+gg+r++V+pGn++f++ d++erp++ggg+g+ g+
  EHU00592.1   4 FIDRRLNGKNKSAVNRQRFLRRYKSQIKQSISEAINKRSVTDVSSGESVSIPVDDINEPIFHQGRGGQRHRVHPGNDHFVQNDRVERPQGGGGSGS-GQ 101
                 9***************************************************************************************99877654.44 PP

      DUF444 101 g..seaGegedefefelsreEfldllfedLeLPdLekkklekveekktkragytrkGspsnldvkrtlrealkRrialkrpkeeelreleeelaeleae 197
                 g  s++Gegedef+f++s++E+ldllfedL+LP+L+k++ ++++e+kt+rag+t++G+p+n++v+r+l+++l+Rr+a++++k+++l+ele++l+e+e++
  EHU00592.1 102 GnaSQDGEGEDEFVFQISKDEYLDLLFEDLALPNLRKNQHRQLNEYKTHRAGFTSNGVPANISVVRSLQNSLARRTAMTAGKRRQLHELEDALSEVEKS 200
                 446**********************************************************************************************99 PP

      DUF444 198 eeekeseeleeleeeieeleerikripfidelDlRYrrvekepkpesnaVmfclmDvSGSMdetkkdlakrfFilLylFLkrkYekvevvFirHtteAk 296
                 e  ++  e+e+l++ei+el++ri+r+pfid++DlRY+++ek+p+p+s+aVmfclmDvSGSMd+++kd+akrf+ilLylFL+r+Y++vevv+irH+t+Ak
  EHU00592.1 201 EP-AQLLEEERLRKEIAELRARIDRVPFIDTFDLRYKNFEKRPEPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAK 298
                 87.666699****************************************************************************************** PP

      DUF444 297 eVdeeeFFysresGGTvvSsalelmkeiieerYppseWNiYaaqasDgdnwseDsekavellaekilplvqyfaYveitpsaseeeqtlweeyekvaee 395
                 eVde+eFFys+e+GGT+vSsal+lm+e+++erY+p++WNiYaaqasDgdnw++Ds+ + e+la+++lp+v+y++Y+eit+   +++qtlw+eye++++ 
  EHU00592.1 299 EVDEQEFFYSQETGGTIVSSALKLMDEVVKERYDPAQWNIYAAQASDGDNWADDSPLCHEILAKNLLPVVRYYTYIEITR---RAHQTLWREYEHLQSM 394
                 ********************************************************************************...**************** PP

      DUF444 396 eenfamakvkekediypvfrellkke 421
                 ++nfa+++++e+ediypvfrel++k+
  EHU00592.1 395 FDNFAIQHIREPEDIYPVFRELFHKQ 420
                 ***********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3126.38
//
Query:       EHU00593.1  [L=575]
Description: putative cation/proton antiporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-55  188.7  46.0    1.7e-55  188.4  46.0    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    3.4e-15   55.8   0.0    5.8e-15   55.1   0.0    1.4  1  CorC_HlyC       Transporter associated domain
    5.6e-10   38.9   0.0    1.1e-09   38.0   0.0    1.5  1  TrkA_C          TrkA-C domain


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4  46.0   2.9e-59   1.7e-55       2     379 ..      15     387 ..      11     389 .. 0.94

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 2.9e-59
                     HHHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS......HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   2 vllillallvgllarrlklpeivgliiaGlllGpsglglieps.eedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliG 95 
                     vl+++++ll+ + ++rl++p +v+++++G+l G  g g i+ +      ++s+l l ++l++ G++++ ++++  l+++l la++gv+it+ l+G
      EHU00593.1  15 VLVASSILLSSF-SSRLGIPILVIFLALGMLAGIDGIGGIAFDnYPAAYLISNLALAIILLDGGMRTKASSFKVALGPALSLATVGVIITAGLTG 108
                     344444444444.*************************5444457************************************************** PP

                     HHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHH CS
  Na_H_Exchanger  96 lllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavgg 190
                     +++++  ++ +++ +++l+gai+  td+++v ++l   + ++er+  +l+ es+ nD +av+l+  l++++  e+g++   +++++ ++  +++g
      EHU00593.1 109 MVAAW--LFRLDMMQGFLIGAIIGSTDAAAVFSLL-GDKGLNERVSATLEIESGSNDPMAVFLTITLIEMI--EQGRTGLDWMFVVHLIQQFGLG 198
                     ****9..79**************************.77788******************************..777777778889999999**** PP

                     HHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTT..HHHHHHHHHHHHHHHHHHHHHHHHSXH CS
  Na_H_Exchanger 191 lllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnk..lseklesfreglfnplfFvlvGlsldl 283
                     ++lgl  g  l+ ++ ++   + l++ll+l   +l+++l+++l  sgil++ l+G +l++++ +n+  + + ++ ++ +l  + +F+++Gl + +
      EHU00593.1 199 IVLGLGGGRALQQLINRMNLAPGLYPLLALSGGILVFALTTVLEGSGILAVYLCGFLLGNSPIRNRfgILQTFDGMA-WLSQIGMFIVLGLLVTP 292
                     *********9999999999***********************************************99999999999.***************** PP

                     HHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX.SSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTT.SSTTTCSTSXHHHHHHHHHH CS
  Na_H_Exchanger 284 kvlnnhlsvlilvllilvaillgrilavflllrll.glslrealiigfgglqrgavalalaalgpalgllarel.yallivvvlftvlvqGlslk 376
                     + l  ++  +++++l+l++il++r+l+vf+ l  + g++ re+++i++ gl rgav ++la++  ++gl ++ l ++++++vvl+++ +qG+sl 
      EHU00593.1 293 SDL--WHIAVPAMILSLWLILVARPLSVFIGLLPFrGFTARERIFISWVGL-RGAVPIILAVFPMMAGLENASLyFNIAFFVVLVSLMLQGTSLG 384
                     ***..79999********************9999989**************.*****************************************98 PP

                     HHH CS
  Na_H_Exchanger 377 pll 379
                     +  
      EHU00593.1 385 FAA 387
                     865 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   9.8e-19   5.8e-15       2      80 ..     493     571 ..     492     572 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 9.8e-19
                 EECTTEEEEETT-BHHHHHHHHTSTTHHC.T-S.BHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelglelpee.dye.TlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvekl 80 
                 ++ +g++++d++++l+++++++glel+e+ +++ +lg l+++ lg  P +g+  +++++ l++tV e ++++I+k+ v+++
  EHU00593.1 493 QRFFGDFILDADARLHDVAQIYGLELDEDtNAQqSLGQLMMSMLGGAPVVGD--QIEWNQLTWTVAEKEDNHIVKIGVRPN 571
                 56789***********************645555******************..88888******************9986 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.8e-13   1.1e-09       6      69 ..     421     483 ..     417     484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.8e-13
                 EE--GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   6 vpagsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                 ++a+ + vG  l++l++++   +++a+ R+++l++p+g t+L+e+Dv+ v+g   dl +l + +
  EHU00593.1 421 LSADKWCVGAALRDLQMPR-ETRIAALFRDNVLMHPNGATRLKENDVICVIGRERDLPALGKMF 483
                 67899**************.************************************99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3874.45
//
Query:       EHU00594.1  [L=33]
Description: hypothetical protein CKS_2711 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-18   65.3   1.0    2.8e-18   65.2   1.0    1.0  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.035   13.5   0.0      0.035   13.5   0.0    1.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.0   4.7e-22   2.8e-18      17      46 .]       1      30 [.       1      30 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.7e-22
  HTH_Tnp_IS1 17 mAfNGaGvraTARtlkvGiNTviRtLKnSr 46
                 mAfNGaGvr+TARtlk+GiNTviR LK+Sr
   EHU00594.1  1 MAFNGAGVRDTARTLKIGINTVIRALKSSR 30
                 9****************************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-06     0.035      28      49 ..       6      27 ..       1      29 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  + v++ Ar l ++ +TV+r+l+
    EHU00594.1  6 AGVRDTARTLKIGINTVIRALK 27
                  5589****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.11      16      40 ..       4      28 ..       1      33 [] 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
      HTH_23 16 eGlsvreIAreLgvsrrTvyrwlkr 40
                +G+ vr+ Ar L +  +Tv r lk 
  EHU00594.1  4 NGAGVRDTARTLKIGINTVIRALKS 28
                58899****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 268.06
//
Query:       EHU00595.1  [L=71]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-36  125.1   0.4    2.3e-36  125.0   0.4    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.4   1.3e-40   2.3e-36      61     131 .]       1      71 []       1      71 [] 0.99

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 1.3e-40
  DDE_Tnp_IS1  61 iltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  ++tsddwg+y re++kdkhl++ki+tqriernnltlrtr+krlark+++fs+s+e+hekvig ++e++m++
   EHU00595.1   1 MITSDDWGSYAREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSIEIHEKVIGAFIERHMFY 71 
                  789******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 581.63
//
Query:       EHU00596.1  [L=488]
Description: undecaprenyl-phosphate UDP-galactose phosphotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-63  212.7   0.0    7.4e-63  211.5   0.0    1.6  2  Bac_transf     Bacterial sugar transferase
    2.8e-07   30.7   0.4    5.9e-07   29.7   0.4    1.6  1  CoA_binding_3  CoA-binding domain
  ------ inclusion threshold ------
      0.086   13.5   0.1       0.17   12.6   0.1    1.4  1  PglD_N         PglD N-terminal domain


Domain annotation for each model (and alignments):
>> Bac_transf  Bacterial sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.56   3.3e+03     162     181 ..      87     106 ..      85     108 .. 0.83
   2 !  211.5   0.0   1.2e-66   7.4e-63       1     183 [.     292     482 ..     292     483 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.56
  Bac_transf 162 YvenlslllDlkillktvka 181
                 Y+ +  ++++lk ++kt+++
  EHU00596.1  87 YTYRKPFWFELKEIVKTLVV 106
                 7777889**********986 PP

  == domain 2  score: 211.5 bits;  conditional E-value: 1.2e-66
  Bac_transf   1 KrlfDivlsllalillsplllvialliklessggpvffkqkRvGkngkpFkiyKFRsmvkdaekkl..............gavvklkndpritkvGrfl 85 
                 Kr fDiv++ l+l++l+p++++++ ++k + +gg+ ++ ++Rv ++gk+Fk++KFRsmv+++++ l              ++ +klkndprit++G fl
  EHU00596.1 292 KRGFDIVVASLLLLFLAPVFALLCYMVK-R-DGGNAIYGHERVSQDGKKFKCLKFRSMVTNSKEVLenllatseearrewDKDFKLKNDPRITRIGGFL 388
                 9******************999999999.4.688****************************9999********************************* PP

  Bac_transf  86 RktslDELPqlinVLkGdMslVGpRPelpeeveeeieeyeee.eerlkvkPGltGlaqvnsgrselsleeklelDleYvenlslllDlkillktvkavl 183
                 RktslDELPql+nV++G+MslVGpRP +++e    +e+y    ++ l +kPG+tGl+qv sgr+++++++++ +D +Yv+n+ l++D+ il+kt  +vl
  EHU00596.1 389 RKTSLDELPQLWNVIRGEMSLVGPRPVIEAE----LERYAGDvDYYLMAKPGMTGLWQV-SGRNDIDYDTRVYFDSWYVKNWALWTDIAILFKTAGVVL 482
                 *****************************94....44554554566*************.78888******************************9998 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.4   9.9e-11   5.9e-07      19     128 ..      98     207 ..      85     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 9.9e-11
  CoA_binding_3  19 lrvlsawllvllllallsfslkdafSR.lwlaywavvglvllivsrllvravlrrlrrngrnerrvvavgggeelakqiranpelgfrvvgvfddr 113
                    + ++ + ++  ll ++l+++ k +fSR +w+ +w  + l+l +  r+ v ++++r  + ++  ++++++ + +e++++++++  lg++v++++  +
     EHU00596.1  98 KEIVKTLVVFSLLDLALIAFSKWDFSRmVWVFSWSYALLLLPL-MRAGVKSAINRAGQWQKETIIIGSGRNATEAYAALQSEEILGYNVQAFISVE 192
                    455555555555555566677899***99*****988877777.899************************************************* PP

  CoA_binding_3 114 ddarseevagvpvlg 128
                    d+  ++ v+gvpv+ 
     EHU00596.1 193 DAPLQQSVNGVPVIS 207
                    *999999*****985 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.8e-05      0.17       3      65 ..     160     227 ..     158     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
      PglD_N   3 vIiGaGGhgkvvadiieange..yeiigflDdnk...ktevegypvlgkaiellkslseeeyevviAI 65 
                 +IiG G  + + +  +++++   y++ +f+  ++   +++v+g+pv++  + +++ +  +++++++A+
  EHU00596.1 160 IIIGSGRNATEAYAALQSEEIlgYNVQAFISVEDaplQQSVNGVPVISANDINWQTIDRDNVQFIVAM 227
                 89**********9999988644499988886554113689*********9999*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4070.76
//
Query:       EHU00597.1  [L=397]
Description: putative multidrug resistance protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-39  135.7  44.0    1.8e-39  135.7  44.0    1.6  1  MFS_1     Major Facilitator Superfamily
    3.1e-07   29.6  27.3    8.9e-06   24.8  11.3    3.0  2  Sugar_tr  Sugar (and other) transporter
    1.3e-05   23.8   2.7      2e-05   23.2   2.7    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
        1.9    8.8   6.0        8.6    6.6   0.2    2.3  2  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7  44.0   3.9e-43   1.8e-39       2     352 ..       9     353 ..       8     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 3.9e-43
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 l +++l+ l++++++p+lp  +ae l   ++ i++ + l+ l  ++++l+ G+l+d++Gr+++ llgl+l+++g+++++ ass++l+l++rv+qG + +
  EHU00597.1   9 LSLVLLAPLGIDLYLPTLP-QIAEGLSTPVTLIQTTIPLFLLIIGLGQLVSGPLVDNYGRKPIALLGLTLYIAGSAIAATASSFPLFLLARVVQGYAVC 106
                 567899*************.8*****************************************************66666347777************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 +++ ++ + ++d  ++++ +ra+g+l+++ ++ ++l+pllggllas++gWra+f++l+  +++++++++++lpe++p+             ++ ++ + 
  EHU00597.1 107 CSAVVAFSGVRDRLSGDDAARAYGFLNGALNIVPALAPLLGGLLASAFGWRAPFWFLCTYAAVVMLMVIIWLPETRPADTLRV--------KGLSVNQ- 196
                 *******************************************************************9999988888888874........4567888. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglalla 295
                 + a+l++p +  l +a++ ++ ++ +   +++l p +l++  gls  l  ++++++ ++ ++ +++++ + +++ gr + l +++l +ll+a gl+l++
  EHU00597.1 197 YAAILRQPRF--LAFAFANAG-ALGMvltYVSLAPHILMTEGGLS-PLAFSFAFGANGFWIMLVSVVVNKAIRKAGRPFCLAMGCLTMLLGA-GLLLAG 290
                 9999999977..444444443.333334588888889********.677777788888888888**********999888888777776665.344444 PP

       MFS_1 296 vt.....ssavllll.vlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +t       ++++l+ + v + + gl+f++++++++a + + +++ag as+l ++++ +gga g
  EHU00597.1 291 MTllpdsLQSHWALYmFPVAVAVaGLAFTVGPATSYALEPY-QQQAGVASALQGFIQMAGGAAG 353
                 444666666666666344558888*****************.4999999999999999999887 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  11.3     2e-09   8.9e-06      52     194 ..      44     181 ..      29     183 .. 0.80
   2 !    8.5   8.0   0.00018       0.8     276     371 ..     226     324 ..     188     385 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2e-09
                 HHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHH.HHHHHTTS-SCCHHHHHHHHHHHHHH CS
    Sugar_tr  52 vsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlv.PmyisEiApkklRgalvslyqlaitf 149
                   +fl++  +G+l++g+l+d +GRk++ l + +l+++g+++ a+a    s+ +++++Rv+ G +v +  v++ +   + ++ ++ + a + l+     +
  EHU00597.1  44 IPLFLLIIGLGQLVSGPLVDNYGRKPIALLGLTLYIAGSAIAATAS---SFPLFLLARVVQGYAVCCSAVVAfSGVRDRLSGDDAARAYGFLNGAL-NI 138
                 5567888889************************************...***************99988876255666778777777777666544.44 PP

                 HHHHHHHHHHHHHTSS-TTHHHHHHH.CCHHHHHHHHHHGGGS--- CS
    Sugar_tr 150 Gilvaaifglglnktsnadgwrillg.lqlvpallllilllflPES 194
                    +a  +g  l+   +   wr +++ l+   a+++l+++++lPE+
  EHU00597.1 139 VPALAPLLGGLLASAFG---WRAPFWfLCTYAAVVMLMVIIWLPET 181
                 44556666666666666...99999824666788999999999998 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00018
                 HTTTHHHHSS-THHHHHHHHHHH...HHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.....CHHHHHHHHHHHHHHHTTTTH CS
    Sugar_tr 276 ysptifenlglsksllvtiivgv...vnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks..kaasivaivfialfialfalgwgp 369
                 ++p i+ + g   +l++++ +g+   + +++++v+   ++++GR  +l +G+++m++ + +l   + ll+++    +a +++ v++a+   +f++g++ 
  EHU00597.1 226 LAPHILMTEGGLSPLAFSFAFGAngfWIMLVSVVVNKAIRKAGRPFCLAMGCLTMLLGAGLLLAGMTLLPDSLqsHWALYMFPVAVAVAGLAFTVGPA- 323
                 55666555544444466666655111777777777799*****************9988777645555666553566666666666666666665554. PP

                 HH CS
    Sugar_tr 370 vp 371
                   
  EHU00597.1 324 -T 324
                 .3 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   2.7   4.4e-09     2e-05      95     217 ..      55     178 ..      33     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.4e-09
       TRI12  95 ilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpaga.splfvgelms..nktkflgllivsipvvvtsglspylgqrla 190
                  lv g l d +gr+p+ +l   l + g+ + +ta+ f  +l a  + g a   +   +   v + +s  + ++  g+l  ++ +v   +l+p lg  la
  EHU00597.1  55 QLVSGPLVDNYGRKPIALLGLTLYIAGSAIAATASSFPLFLLARVVQGYAVCCSAVvAFSGVRDRLSgdDAARAYGFLNGALNIVP--ALAPLLGGLLA 151
                 4788********************************************99876544033346677772235678888887776554..48********* PP

       TRI12 191 iqgswrwifyiyiitsaiavllivvwy 217
                     wr  f+     +a+ +l++++w 
  EHU00597.1 152 SAFGWRAPFWFLCTYAAVVMLMVIIWL 178
                 **********99999999999999996 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2    0.0019       8.6      42     106 ..     159     222 ..     107     235 .. 0.74
   2 ?    4.5   1.3    0.0084        38      43      99 ..     306     362 ..     265     377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0019
                 .....XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXX.......XXXX.XXXXXXXXXXXXXXXX CS
        RskA  42 r....laaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaap.......daagatatvvdsasggalvld 106
                 +     + aa+++l ++++    +++++d+lr    +  +++a+l++p       +          +a++  +vl+
  EHU00597.1 159 PfwflCTYAAVVMLMVIIW--LPETRPADTLRVKGLSVNQYAAILRQPrflafafA----------NAGALGMVLT 222
                 1445445566666668888..99*************************55544443..........3333333333 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0084
                 XXXXXXXXXXXX..XX..........XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
        RskA  43 laaaaAaalllv..lgqlavasaaldplrqsaaqaeavvavlaapdaagatatvvdsas 99 
                 ++++a+a+++l+  +g     s al+p +q+a  a+a+  +++ +++a++++ +v+ + 
  EHU00597.1 306 MFPVAVAVAGLAftVG--PATSYALEPYQQQAGVASALQGFIQMAGGAAGSLLIVALPL 362
                 5566666666551155..77788899999999999999999999988888887777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2817.58
//
Query:       EHU00598.1  [L=356]
Description: PLP-binding alanine racemase 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-65  219.7   0.0    4.9e-65  219.2   0.0    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    8.3e-42  141.9   0.2    1.4e-41  141.2   0.2    1.4  1  Ala_racemase_C  Alanine racemase, C-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.0   5.4e-69   4.9e-65       1     219 []       9     217 ..       9     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 219.2 bits;  conditional E-value: 5.4e-69
                     EEHHHHHHHHHHHHHHSCTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC.STGGGHHHHHHTTEEEEE CS
  Ala_racemase_N   1 idldalrhNlrrlralagpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg.fspeelaalaeydltvtv 94 
                     i+++alrhNl+ +r++a p+++++ vvKanayghg+++v + l     dgf+  ++eEa+ lre+g+++pil+leg f+p++l ++ +y+lt+ v
      EHU00598.1   9 INQQALRHNLAIVRRAA-PASRVWSVVKANAYGHGIARVWESLS-S-TDGFALLNMEEAILLREQGWKKPILLLEGfFHPDDLTLIDRYRLTTSV 100
                     899**************.9999*******************888.6.9****************************99***************** PP

                     SSHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHHHHHHHTTGGGSE CS
  Ala_racemase_N  95 dsleqlealaaaareagkplrvhlkidtgmgRlGftpeeleellealaalpglrleglmtHfasadepdeeteaqlarfeealeelekaglrppv 189
                     +s +q+ ala+a    + p+++ lki++gm+RlGf+pe+++ ++ +l+al+++  + lm Hfa+a++pd  + a l+r+++a+e l+        
      EHU00598.1 101 HSNWQIHALANATL--SAPVDIYLKINSGMNRLGFRPEQVNGIWHKLRALENVGDITLMAHFADAENPD-GIVAPLQRIADATEGLD------SP 186
                     ************98..9**************************************************99.****************6......46 PP

                     EEEESHHHHHHSG.GGTTEEEESGGGGT-SS CS
  Ala_racemase_N 190 vslanSaaillaa.ahfdmvRpGialyGlsp 219
                     vsl+nSa++l+++ ah d+vRpGi+lyG+sp
      EHU00598.1 187 VSLSNSACTLWHPeAHRDWVRPGIILYGASP 217
                     9***********7699*************98 PP

>> Ala_racemase_C  Alanine racemase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.2   1.5e-45   1.4e-41       1     121 [.     232     352 ..     232     355 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 1.5e-45
                     SEEEEEEEEEEEEESTTSEESGGGSEE-SSSEEEEEES--GGGTCGGGGT..TEEEETTEEEEEESEE-SSEEEEEECTSTT--TT-EEEEEEET CS
  Ala_racemase_C   1 vmtlkarviqvkevkagegvgYgatyvaerdtriavvpiGYaDGlprals..gevlingkrvpvvGrvcMDqlmvdlteveevkvgdevvllgeg 93 
                     vmtl++++i v++++ag+gvgYg +y+a++++ri+vv++GYaDG+pr++    +v+++g  ++vvG v+MD+++vdlt ++++ +g+ v+l+g+ 
      EHU00598.1 232 VMTLSSEIIGVQQLQAGDGVGYGYRYRASQPQRIGVVACGYADGYPRHAPngTPVFVDGVLTQVVGAVSMDMITVDLTPCPQAGIGSPVELWGN- 325
                     8**********************************************987445****************************************8. PP

                     EEEEHHHHHHHHTSEHHHHHHTSHTTSE CS
  Ala_racemase_C  94 eeitveelaeaagtisyeiltrlskrvp 121
                      +++++++a+aagt+ ye++++l++rvp
      EHU00598.1 326 -NVKIDQVAKAAGTVGYELMCALAPRVP 352
                     .8*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2608.47
//
Query:       EHU00599.1  [L=433]
Description: D-amino acid dehydrogenase small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-77  259.1   0.4    1.1e-76  258.8   0.4    1.1  1  DAO              FAD dependent oxidoreductase
    2.1e-08   33.8   0.1      5e-05   22.7   0.1    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    2.5e-08   34.0   0.0    1.4e-06   28.4   0.0    2.6  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    4.6e-08   33.5   0.0    3.3e-06   27.5   0.0    2.4  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.8e-07   30.6   1.1    5.5e-06   25.7   1.1    2.2  1  FAD_binding_2    FAD binding domain
    2.3e-07   30.6   0.1    2.4e-05   24.0   0.1    2.3  2  ApbA             Ketopantoate reductase PanE/ApbA
    3.3e-07   29.4   0.4      0.012   14.3   0.0    2.7  3  HI0933_like      HI0933-like protein
    1.3e-05   24.7   0.0     0.0019   17.6   0.0    2.2  2  Amino_oxidase    Flavin containing amine oxidoreductase
     0.0001   21.6   0.0    0.00016   21.1   0.0    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    0.00014   21.2   0.3    0.00087   18.6   0.2    2.1  2  FAD_binding_3    FAD binding domain
    0.00025   20.7   0.0    0.00044   19.9   0.0    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
    0.00049   20.0   0.1      0.001   19.0   0.1    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00069   19.1   1.1       0.18   11.1   1.4    2.7  2  FAD_oxidored     FAD dependent oxidoreductase
     0.0015   17.5   0.2        0.2   10.5   0.3    2.3  2  Trp_halogenase   Tryptophan halogenase
     0.0053   15.9   0.2      0.032   13.3   0.1    2.1  3  GIDA             Glucose inhibited division protein A
  ------ inclusion threshold ------
       0.01   15.1   0.0        2.6    7.2   0.1    2.2  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
      0.015   14.5   0.0      0.043   13.0   0.0    1.7  2  Thi4             Thi4 family
      0.016   15.4   0.0      0.037   14.3   0.0    1.6  1  TrkA_N           TrkA-N domain
      0.027   13.0   0.0       0.47    8.9   0.0    2.0  2  GDI              GDP dissociation inhibitor
      0.027   14.5   0.0      0.059   13.4   0.0    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
      0.049   13.9   0.0      0.098   12.9   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.058   13.8   0.0       0.11   13.0   0.0    1.5  1  NAD_binding_7    Putative NAD(P)-binding
      0.098   12.7   0.0       0.17   11.9   0.0    1.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
        0.1   13.1   0.0       0.27   11.7   0.0    1.9  1  XdhC_C           XdhC Rossmann domain
       0.12   12.6   0.0       0.23   11.6   0.0    1.5  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.12   13.0   0.0       0.32   11.6   0.0    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.13   11.6   0.1       0.21   10.9   0.1    1.3  1  ThiF             ThiF family
       0.13   12.2   0.1        0.3   11.1   0.1    1.6  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.8   0.4   1.7e-79   1.1e-76       1     351 [.       2     396 ..       2     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 258.8 bits;  conditional E-value: 1.7e-79
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.......................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.......................................... 55 
                 +vvi G+G++G++ A++Lar+g  Vt+++++++++ ++S +n+g++++g++ +p+a                                           
  EHU00599.1   2 HVVILGSGVVGVTSAWYLARAGhqVTVIDRQPQPAMETSAANAGQISPGYA-APWAApgvplkamkwmfqrhaplairldgsrfqlewmwhmlrncdmq 99 
                 79*******************99***************************8.9998899**************************************** PP

                 .......HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST....TTSEEEEETTEEEE CS
         DAO  56 .......elarlslealeelreleeelgididyrrtGllslaadeeelealdkllallleagldaelldaeevrelepalp....gllgalfypdtgqv 143
                        +++rl+++++++l++l +e+gi  + r+ G+l+l+++++++e   k +a l+eag+++ell++++++ +epal+    +l+g+l  p++ + 
  EHU00599.1 100 hyqqnksRMVRLAEYSRDCLKALRAETGIAYEGRQGGTLQLFRTQQQFESASKDIAVLREAGVPYELLESHQLASVEPALAatqhKLTGGLRLPNDETG 198
                 ******************************************************************************93346789************* PP

                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--GGGHH.HHHTTCTT.TSEEEEEEEEEEEEEECCTHSTGSGC CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaGawsd.llgllkel.dlpispvrgqvlvlkplseklvspaa 239
                 d++ +t+ la+ ae++Gv ++++t++  l +++++++gv+    g +  +ad  V+a G ws+ l+   k++ d+p++p++g++l++ p+++     a 
  EHU00599.1 199 DCQLFTQRLAKMAEEAGVVFRFNTPIDQLLRDGNRIYGVK---CGDEvIKADSYVVALGSWSTaLM---KNIvDIPVYPLKGYSLTI-PVTN-----AD 285
                 ****************************988889*****3...2444346799********98666...555588************.8877.....45 PP

                 SEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEE..EEEEEEE.ETTSSEEEEEEETEEEEEEEEECT CS
         DAO 240 ilpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvlr..kwaGlrp.lpdglpligetpgvkglylatGhs 335
                  +pv  t+ d+++  ++ r d+r++vGg a e  g+++ + +e++++ l   + +l+P+ gdv++   w+Glrp +pdg p++g tp  ++lyl+tGh+
  EHU00599.1 286 AAPVS-TILDETYKVAVTRFDNRIRVGGMA-EIVGFNT-KLPEARRETLEMVVTDLYPEGGDVSQasFWTGLRPmTPDGTPVVGATP-LSNLYLNTGHG 380
                 67788.88888888999999**********.*******.********************99999555*******55*********98.88********* PP

                 TTHHHHHHHHHHHHHH CS
         DAO 336 ghGltlapatGkllae 351
                   G+t+a+++G+lla+
  EHU00599.1 381 TLGWTMACGSGQLLAD 396
                 ***************8 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   7.9e-08     5e-05     144     179 ..       2      38 ..       1      48 [. 0.85
   2 !    9.0   0.0    0.0012      0.74     185     237 ..     203     255 ..     182     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 7.9e-08
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll.r 179
                  ++v+ G+G++Gv  A +la++g++vt++++ +++  +
   EHU00599.1   2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAmE 38 
                  79****************************9998733 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGv 237
                  ++++l++  e+ Gv ++++t + ++ ++g+++  v+ +d e+i+ad  vva G 
   EHU00599.1 203 FTQRLAKMAEEAGVVFRFNTPIDQLLRDGNRIYgVKCGD-EVIKADSYVVALGS 255
                  678888999999999999999999999998555343333.34999999999884 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   2.3e-09   1.4e-06       1      43 [.       5      47 ..       5      71 .. 0.81
   2 ?    2.9   0.0       0.2   1.3e+02      18      36 ..     297     315 ..     289     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.3e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgv 43
                   I+G+G+ G + A++La+ag++v+++++++++    + ++ +++
     EHU00599.1  5 ILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMETSAANAGQI 47
                   89****************************9877666666544 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
                    CTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  18 agfdvlllekrdrlGGraa 36 
                    +++ v+ +++r r+GG a 
     EHU00599.1 297 YKVAVTRFDNRIRVGGMAE 315
                    4889************986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.2e-09   3.3e-06       1      35 [.       2      36 ..       2      46 .. 0.90
   2 ?    3.4   0.0      0.18   1.1e+02      43      78 ..     204     239 ..     199     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 5.2e-09
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +vv++G+G++g+  A +la+ g++Vtv++r++++ 
  EHU00599.1  2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPA 36
                89******************************987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.18
                 HHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  43 skilqeklekngievllntkveeiegsedgvesvkl 78 
                  ++l++  e+ g+ +++nt + ++  +++ +++vk+
  EHU00599.1 204 TQRLAKMAEEAGVVFRFNTPIDQLLRDGNRIYGVKC 239
                 57788999999***********99999988888875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.1   8.6e-09   5.5e-06       2     208 ..       3     262 ..       2     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.6e-09
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaapeavdeL 96 
                    v++ GsG+ G ++A  +a+aG++v+v++  ++   +t ++ +g   ++            p +++   lka+ +    ++   + ++ ++  ++++
     EHU00599.1   3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMETSAANAGQISPG---------YAAPWAAPGVPLKAMKWMFqRHAPLAIRLDGSRFQLEWM 89 
                    9*******************************9999999999999999.........245999999999999999988888888999999999999 PP

                    HHT..T----BCCTSSB-EEE-TT-SST.................................................................EEE CS
  FAD_binding_2  97 eel..gvpfsrtedgpvdvrelGglsat.................................................................art 125
                     ++   +++++ ++++ ++ +l + s++                                                                 ++ 
     EHU00599.1  90 WHMlrNCDMQHYQQNKSRMVRLAEYSRDclkalraetgiayegrqggtlqlfrtqqqfesaskdiavlreagvpyelleshqlasvepalaatQHK 185
                    99999777777666666666666666666666666677777777777788889999999999999*************************886333 PP

                    E-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG.... CS
  FAD_binding_2 126 lhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrallk 208
                    l + ++ ++++ ++ +    rl++ a++agv f+++t++d+L+++++r++G+ +       ++ i+a+  v+a g ++ al+k
     EHU00599.1 186 LTGGLRLPNDETGDCQLFTQRLAKMAEEAGVVFRFNTPIDQLLRDGNRIYGVKCG------DEVIKADSYVVALGSWSTALMK 262
                    3334444448899999999********************************9888......5557888888888888765554 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   3.7e-08   2.4e-05       1      33 [.       3      36 ..       3      48 .. 0.88
   2 ?    4.2   0.0     0.049        31      12      57 ..     202     249 ..     200     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.7e-08
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rl 33
                ++ilG+G +G + a++La+ag++vt+i+r++  +
  EHU00599.1  3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPqPA 36
                68***************************99544 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.049
                 HHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.CEEEEEECEE CS
        ApbA  12 llaakLakagadvtlilrsr.rlealkknGlrltseg.geeilrppea 57 
                 l+  +Lak +++  +++r +  +++l ++G r+++++ g+e+++ +  
  EHU00599.1 202 LFTQRLAKMAEEAGVVFRFNtPIDQLLRDGNRIYGVKcGDEVIKADSY 249
                 6777999978887777777777***************99999887765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   8.7e-05     0.056       2      36 ..       2      36 ..       1      47 [. 0.90
   2 ?   -1.6   0.0       1.3   8.4e+02      61     104 ..      99     143 ..      94     159 .. 0.78
   3 !   14.3   0.0     2e-05     0.012     114     168 ..     206     259 ..     194     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.7e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+++G G  G+  A  +a++g++V++++++++++
   EHU00599.1  2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPA 36
                 79****************************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                  ES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE-STT..EEEET CS
  HI0933_like  61 srypenpkflksalsrftnedlialveelgvelkeedsg..rlFpv 104
                  ++y++n+  +   l++++ + l al +e g++++ ++ g  +lF +
   EHU00599.1  99 QHYQQNKSRMV-RLAEYSRDCLKALRAETGIAYEGRQGGtlQLFRT 143
                  67777766654.5999****************99999884455655 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2e-05
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-G CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiP 168
                   l k ++eagv +r +t + ++ ++ ++++ vk+ ++e ++ad+ v+A+G+ S +
   EHU00599.1 206 RLAKMAEEAGVVFRFNTPIDQLLRDGNRIYGVKC-GDEVIKADSYVVALGSWSTA 259
                  5888999***************************.***************99975 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.016        10       3      23 ..      12      32 ..      11      35 .. 0.89
   2 !   17.6   0.0     3e-06    0.0019     211     274 ..     202     272 ..     132     348 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.016
                   HHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEar 23
                   G + A++L++aG++Vtv+  +
     EHU00599.1 12 GVTSAWYLARAGHQVTVIDRQ 32
                   7899*************9876 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3e-06
                    HHHHHHHH..TTTTEEEETSEEEEEEEEETTC.EEEEETTSTEEEESEEEE-S-HHHHH...SSEEES..CC CS
  Amino_oxidase 211 qlpealae..elrgldirlntrVkeikregdg.vtvtledgevveaDaVvvTvplgvlk...ailfsP..pl 274
                       ++la+  e+ g+ +r+nt+  ++ r+g+  ++v++   ev++aD++vv++  +  +   +i   P  pl
     EHU00599.1 202 LFTQRLAKmaEEAGVVFRFNTPIDQLLRDGNRiYGVKC-GDEVIKADSYVVALGSWSTAlmkNIVDIPvyPL 272
                    55677787888*****************88887***99.57788*********9887776555555555555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.5e-07   0.00016      30      69 ..       2      41 ..       1      79 [. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-07
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69
                 +v+++G Gv+G+ +++  ++ g +Vtv+D +p+ + + ++
   EHU00599.1  2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMETSA 41
                 79****************************9987766665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   1.4e-06   0.00087       3      40 ..       2      39 ..       1      47 [. 0.89
   2 ?   -0.1   0.0      0.66   4.2e+02     108     137 ..     204     233 ..     155     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                    V+I G+G +G+++a  L++aG +v++++++ + + ++
     EHU00599.1  2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMET 39
                   69****************************99887665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.66
                    HHHHHHHHHHHTEEETCSEEEECCEECCCC CS
  FAD_binding_3 108 eriLvehaeerglqvrfktevesleqdeeg 137
                    ++ L++ aee+g+ +rf+t +  l++d++ 
     EHU00599.1 204 TQRLAKMAEEAGVVFRFNTPIDQLLRDGNR 233
                    556788888888888888888888888776 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.9e-07   0.00044       1      33 [.       1      33 [.       1      48 [. 0.90

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.9e-07
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDide 33
                    m+++++G+G vG+++a  la++gh+v+++D + 
      EHU00599.1  1 MHVVILGSGVVGVTSAWYLARAGHQVTVIDRQP 33
                    789***************************876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   1.6e-06     0.001       1      38 [.       2      39 ..       2      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealeka 38
                +v ++G+G++G   a  +a+ag++V+++d++++ + + 
  EHU00599.1  2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMET 39
                589***************************98765554 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   1.4   0.00028      0.18       2      32 ..       3      33 ..       2     177 .. 0.95
   2 ?    4.7   0.0     0.025        16      83     138 ..     197     248 ..     158     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  vv+ G+g+ Gv+ A   araG +v ++++++
    EHU00599.1  3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQP 33
                  9***************************987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.025
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkv 138
                   t + + +++ l +m +eagv   +nt +++  ++g+ri +v++    g+++i+A+ 
    EHU00599.1 197 TGDCQLFTQRLAKMAEEAGVVFRFNTPIDQLLRDGNRIYGVKC----GDEVIKADS 248
                   67888999999*******************************9....467777765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.3   0.00031       0.2       2      35 ..       3      33 ..       2      47 .. 0.89
   2 ?    4.6   0.0     0.019        12     152     209 ..     199     255 ..     197     289 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvesee 35
                    +vi+G G  G ++A +la+a+   ++vt+++ + 
      EHU00599.1  3 VVILGSGVVGVTSAWYLARAG---HQVTVIDRQP 33
                    9********************...89***98765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
                     -HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGG CS
  Trp_halogenase 152 daalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGf 209
                     d +l+ + L ++ae++Gv  +  +  +  l++ +r+ +++  d ++++ad ++ + G 
      EHU00599.1 199 DCQLFTQRLAKMAEEAGVVFRFNTPIDQLLRDGNRIYGVKCGD-EVIKADSYVVALGS 255
                     67899***********************************955.56999988877765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1     5e-05     0.032       2      37 ..       3      38 ..       2      51 .. 0.80
   2 ?   -0.8   0.0      0.98   6.3e+02     117     154 ..     223     259 ..     199     265 .. 0.73
   3 ?   -3.5   0.0       6.3     4e+03     301     318 ..     315     331 ..     310     334 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37
                v+++G G  G+  A+ +ar+G++v+ i  + +  +e
  EHU00599.1  3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAME 38
                99***********************99555444444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.98
                 -EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT- CS
        GIDA 117 eveeliveekkvkgvvtedgetikakavviatGtflkg 154
                  +++l+ + +++ gv+   +e+ika++ v+a G+++++
  EHU00599.1 223 PIDQLLRDGNRIYGVKCG-DEVIKADSYVVALGSWSTA 259
                 566676666888888764.6799**********97665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 6.3
                 EEET----S-HHHHHHHH CS
        GIDA 301 ylvgfstslpeevqkevl 318
                  +vgf+t+lpe  + e+l
  EHU00599.1 315 EIVGFNTKLPEARR-ETL 331
                 689*******9655.444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0041       2.6     167     198 ..       3      34 ..       1      52 [. 0.72
   2 ?    5.6   0.0     0.012         8      86     143 ..     206     264 ..     193     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0041
  Pyr_redox_3 167 vvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                  vv+ G +  +v  A  l+r+g++Vtv++r+ +
   EHU00599.1   3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPQ 34 
                  77777777788888888888888888887764 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.012
  Pyr_redox_3  86 YlrevaksfelpiklfeeVesvkke.degfevetsketyeAkkviiAtGefdkPnklni 143
                   l+++a++  +  + ++ + ++ ++ ++ + v++  e+++A++ ++A G ++   + ni
   EHU00599.1 206 RLAKMAEEAGVVFRFNTPIDQLLRDgNRIYGVKCGDEVIKADSYVVALGSWSTALMKNI 264
                  5778899999999999***9999962677********************9998777666 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.7e-05     0.043      19      50 ..       2      32 ..       1      40 [. 0.93
   2 ?   -3.2   0.0       6.4   4.1e+03     106     136 ..     209     238 ..     199     246 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.7e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailers 50
                 vvi G+G  G+t+a yla++ + +v++++r+
  EHU00599.1  2 HVVILGSGVVGVTSAWYLARA-GHQVTVIDRQ 32
                69*******************.*******986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.4
                 HHHTSTTEEEEESEEEEEEEEETBTEEEEEE CS
        Thi4 106 kvlqlanvkllnavaveDlivregegvaGvv 136
                 k+ + a+v     + + D ++r+g+++ Gv 
  EHU00599.1 209 KMAEEAGVVFRFNTPI-DQLLRDGNRIYGVK 238
                 4444466643333444.66789999999985 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.8e-05     0.037       1      38 [.       3      40 ..       3      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.8e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelr 38
                ++i+G G vG + a +L + g+ +v+vid++++ + e +
  EHU00599.1  3 VVILGSGVVGVTSAWYLARaGH-QVTVIDRQPQPAMETS 40
                79*****************555.8********9876654 PP

>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.095        61       7      47 ..       3      43 ..       1      53 [. 0.88
   2 ?    8.9   0.0   0.00073      0.47     235     281 ..     205     250 ..     199     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.095
                EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE- CS
         GDI  7 vivlGtGlkecilsGllsvdgkkvlhldrndyyGgesaslt 47
                v++lG+G+     +  l+  g++v ++dr++    e+++ +
  EHU00599.1  3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMETSAAN 43
                99********99999***************99888887766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00073
                 HHHHHHHHHTT-EEETS--ECEEEE-TTS-EEEEEETTEEEEECEEE CS
         GDI 235 qgfarlsaiyGGtymlnkpvdevvldedgkvvGvkseeevakakkvi 281
                 q +a+++   G  + +n+p+d+++  + +++ Gvk ++ev+ka+  +
  EHU00599.1 205 QRLAKMAEEAGVVFRFNTPIDQLLR-DGNRIYGVKCGDEVIKADSYV 250
                 678899999999********99987.899**************8643 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.3e-05     0.059       9      68 ..      13      79 ..       7      98 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-05
  Glyco_transf_4  9 leLaraLarrGheVtvvtpgddgpleeev.......elvvrvprvplpllkrllrslaflrrlrrll 68
                    ++ a +Lar+Gh+Vtv+ ++++++ e          + + ++ + p ++lk  +++++ +  l+ +l
      EHU00599.1 13 VTSAWYLARAGHQVTVIDRQPQPAMETSAanagqisPGYAAPWAAPGVPLKAMKWMFQRHAPLAIRL 79
                    556789***********99999999988676655555555555555555556666666555555555 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00015     0.098       1      41 [.       3      40 ..       3      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskekleala 41
                     v+i+G+G vG   a++lar ++   ++tv+dr+ + + ++ 
       EHU00599.1  3 VVILGSGVVGVTSAWYLARAGH---QVTVIDRQPQPAMETS 40
                     89******************97...8******998765554 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00017      0.11       9      45 ..       2      38 ..       1     110 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00017
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevkeele 45
                   +v++ G G v+ + +  l++ag +vtv++ + ++++e
     EHU00599.1  2 HVVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAME 38
                   89**************************999644444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00027      0.17      17      96 ..      13     231 ..      10     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
                 HHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
        CbiA  17 anLaralarrglrVllvDaDpqannlaileglendiep............................................................. 54 
                 +++a +lar+g++V ++D +pq ++ ++   + ++i p                                                             
  EHU00599.1  13 VTSAWYLARAGHQVTVIDRQPQ-PAMETSAANAGQISPgyaapwaapgvplkamkwmfqrhaplairldgsrfqlewmwhmlrncdmqhyqqnksrmvr 110
                 578999****************.5555577778888889999999999999999999999999999999999999999999999999999999999999 PP

                 ........................................................................................CCHCCCHHHHH CS
                 ........................................................................................xxxxxxxxxxx RF
        CbiA  55 ........................................................................................dlkrllellea 65 
                                                                                                         d++ + + l++
  EHU00599.1 111 laeysrdclkalraetgiayegrqggtlqlfrtqqqfesaskdiavlreagvpyelleshqlasvepalaatqhkltgglrlpndetgDCQLFTQRLAK 209
                 999999999999999999999999999999999999999999999999999999999999888888888888888888888888888888888888888 PP

                 HCHCHHHH..EEEEEEEEESS...-TTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  66 lgkkkalllkiagvvlnrvdgeneetllkea 96 
                 + ++       agvv+    +   ++ll+++
  EHU00599.1 210 MAEE-------AGVVFRFNTPI--DQLLRDG 231
                 8887.......77777553333..5555555 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00043      0.27       1      44 [.       3      46 ..       3     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00043
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade 44
                +vi+G g v+   a ++a++g +vtv+d +++ a ++++++a +
  EHU00599.1  3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMETSAANAGQ 46
                69*****************************8776555554444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00037      0.23       3      42 ..       4      43 ..       2      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00037
                   EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT CS
  NAD_binding_2  3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg 42
                    ++G Gv G   a  l++ag++v+v++r+++ + e  a++
     EHU00599.1  4 VILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAMETSAAN 43
                   5789*************************99887776655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0005      0.32       2      45 ..       3      42 ..       2      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0005
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaee 45
                   + i+G+G +g + a  l++ag   h+++v+ +r+p+ a e+ ++
     EHU00599.1  3 VVILGSGVVGVTSAWYLARAG---HQVTVI-DRQPQPAMETSAA 42
                   6799*****************...****99.9999988887654 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00032      0.21      20      49 ..       2      30 ..       1      32 [. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
                EEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvgkltlvD 49
                +v+++G G +G   +++La++G  ++t++D
  EHU00599.1  2 HVVILGSGVVGVTSAWYLARAG-HQVTVID 30
                89********************.5789998 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00046       0.3       2      37 ..       3      38 ..       2      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00046
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeeliee 37
                    + +lG+G  G + A  la++gh+v+++ r+++ + e
      EHU00599.1  3 VVILGSGVVGVTSAWYLARAGHQVTVIDRQPQPAME 38
                    89***************************9976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3015.93
//
Query:       EHU00600.1  [L=511]
Description: SpoVR family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.6e-177  589.7  10.2     3e-177  589.5  10.2    1.0  1  SpoVR         SpoVR like protein
  ------ inclusion threshold ------
      0.019   14.6   0.1      0.039   13.5   0.1    1.5  1  Peptidase_M1  Peptidase family M1 domain
      0.065   12.6   0.0       0.12   11.8   0.0    1.3  1  DUF639        Plant protein of unknown function (DUF639)


Domain annotation for each model (and alignments):
>> SpoVR  SpoVR like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  589.5  10.2  5.1e-181    3e-177       1     417 [.      20     451 ..      20     452 .. 0.98

  Alignments for each domain:
  == domain 1  score: 589.5 bits;  conditional E-value: 5.1e-181
       SpoVR   1 deelkeleeakeeieeiakelgLdfypnqfeiitaeqmleaaayvgmPlrysHWsfGkeyeklkksykyglsklaYElViNsdPciaylleeNslvqqk 99 
                 d++++ l+ + +ei ++ak++gLd+yp+q+e+it+eqm++a+++vgmP++ysHWsfGk++ +++++yk+g+++laYE+ViNs+Pciayl+eeN++++q+
  EHU00600.1  20 DWTFELLDVYLAEIDRVAKHYGLDTYPHQIEVITSEQMMDAYSSVGMPINYSHWSFGKKFIETEQRYKHGQQGLAYEIVINSNPCIAYLMEENTMTMQA 118
                 799************************************************************************************************ PP

       SpoVR 100 lviAHv.ygHndFFknNalFkkttdarkildslalaaerireyeeryGeeeVEklldaalaleel.vdrykrkekkkleeeekrkkereeye.sqvedl 195
                 lv+AH+ ygHn+FFknN+lF+++tda++i+d+l +a+++i+++eeryG+eeVE+lld+++al+++ vdrykr++k +l+ee++r+k+reey  sqv++l
  EHU00600.1 119 LVMAHAcYGHNSFFKNNYLFRSWTDASSIVDYLLFARNYIADCEERYGVEEVERLLDSCHALMNYgVDRYKRPQKISLQEEKARQKSREEYLqSQVNTL 217
                 *******************************************************************************************999***** PP

       SpoVR 196 wrtleekkkkeeeekekeekfpeepeedlllFleknapeLeeWqrdilrivreeaqYFlPQrqtkimNEGwAsywHstilnel....kltdeeileflk 290
                 wrtl++++k++++ + +  ++p+ep+e+ll+F+eknap Le+Wqr+ilrivr+++qYF+PQ+qt++mNEGwA++wH+tiln+l    k+++++++efl+
  EHU00600.1 218 WRTLPRREKEAAHFEAA--RYPSEPQENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLydegKVSERFMMEFLH 314
                 *****888777666666..9******************************************************************************* PP

       SpoVR 291 shsgvv......apsksglNPYalGlklfedierrveepteeerekfdkkagegre..klfevrelekDesfirqyLtkelvrelklfslkkkeeeee. 380
                 sh++v+      ++ +sg+NPYalG+++f+di+r++++ptee+r +f+++ag+ ++  +l+++++ +kDesfi+q+L+++++r+++lf++ +++++++ 
  EHU00600.1 315 SHTNVIyqppynSQWYSGINPYALGFAMFQDIKRICQSPTEEDRYWFPDIAGS-DWlkTLHFAMREFKDESFISQFLSPKVMRDFRLFTVLDDDRNNYl 412
                 ***********999***************************************.77789***********************************99998 PP

       SpoVR 381 .veaiidekgykkvrekLlkqltnagl.paiqvedvdle 417
                  ++ai+de+gy+++r++Ll+q+++++l p+iqv++vdl+
  EHU00600.1 413 eIAAIHDESGYRAIRQQLLAQYNLSNLePNIQVYNVDLR 451
                 9*************************99********987 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.5e-06     0.039      94     127 ..     282     315 ..     278     346 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-06
                   HHHHHHHHHHHHHHHHHSCCCHCHHHHHHHCHHH CS
  Peptidase_M1  94 LnEGfatyleylildklepewevseqllleevee 127
                   +nEG+at+++y il++l++e +vse++++e +++
    EHU00600.1 282 MNEGWATFWHYTILNHLYDEGKVSERFMMEFLHS 315
                   8*************************98876665 PP

>> DUF639  Plant protein of unknown function (DUF639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     2e-05      0.12     108     162 ..     410     464 ..     393     468 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
      DUF639 108 kledavkvsaepdsntiekivavqdglseLeqllqkvnvvlLklRalllskapqa 162
                   +++  + +e+    i + + +q+ ls+Le ++q  nv l   R+l l   pq 
  EHU00600.1 410 NYLEIAAIHDESGYRAIRQQLLAQYNLSNLEPNIQVYNVDLRGDRSLTLRYVPQS 464
                 556778899********99999*******************99999999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3910.53
//
Query:       EHU00601.1  [L=239]
Description: DNA-binding transcriptional dual regulator of fatty acid metabolism [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-67  224.3   0.0    9.3e-67  224.0   0.0    1.1  1  FadR_C          FadR C-terminal domain
    4.6e-20   71.0   0.0      8e-20   70.3   0.0    1.4  1  GntR            Bacterial regulatory proteins, gntR family
    3.2e-05   23.8   0.0    7.7e-05   22.6   0.0    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
    3.5e-05   23.6   0.0    0.00037   20.3   0.0    2.2  2  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00039   20.9   0.0    0.00079   19.8   0.0    1.6  2  FCD             FCD domain
     0.0013   18.5   1.5      0.059   13.2   0.2    2.9  3  HTH_IclR        IclR helix-turn-helix domain
     0.0063   16.0   1.1     0.0098   15.4   0.1    1.9  2  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.023   14.9   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.026   14.9   0.0      0.071   13.5   0.0    1.7  2  Rrf2            Transcriptional regulator
      0.038   14.2   0.1      0.081   13.1   0.1    1.5  1  PaaX            PaaX-like protein
       0.04   14.0   0.2        0.2   11.8   0.1    2.3  3  HTH_28          Helix-turn-helix domain
      0.067   13.1   0.0       0.16   11.9   0.0    1.6  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> FadR_C  FadR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.0   6.2e-70   9.3e-67       1     163 [.      72     235 ..      72     236 .. 0.98

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 6.2e-70
      FadR_C   1 NnfwetsglniletlirldedkvpelvedllsaRtnisaiyireavknnpekslevlaevkeledkaeafaefDYklfrelafasgnkiYvLilNglkk 99 
                 N+fwetsglniletl+rld+ +vp l+++lls+Rtnis+i+i +a+++ pek+ evl+ v + +d+ ++++e+DY++fr+lafasgn+iY+LilNglk+
  EHU00601.1  72 NDFWETSGLNILETLARLDHGSVPALIDNLLSVRTNISSIFISRALRHYPEKAREVLQAVAQTDDQVDSYTELDYRVFRGLAFASGNPIYGLILNGLKG 170
                 9************************************************************************************************** PP

      FadR_C 100 lYsrvgslyFsneearelalkfYrelkelceee.eaekvaevvrkygkesgkiWkelkkelpenl 163
                 lY+rvg++yFsn+ear++a++fY +l+ lc+++ ++++++e+vr+yg++sg iW++++k++p++l
  EHU00601.1 171 LYTRVGRHYFSNPEARKVAREFYLTLLDLCDKQpTQDEIVECVRHYGRQSGDIWHSMQKSMPNDL 235
                 ******************************98736789************************986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   5.4e-23     8e-20       4      64 .]      11      71 ..       8      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 5.4e-23
                HHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  4 qvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                 ++e++ e I++ ++ pG++LP+ereL++ +gV+rtt+Re+L+rL+++g++++++g+ t+V
  EHU00601.1 11 FAEEYIIESIWNSRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTRV 71
                57899******************************************************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.2e-08   7.7e-05      25      61 ..      35      73 ..      24      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.2e-08
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEE.EEES- CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis.rgrr.irild 61
                +el++++G+tr t+  +l++L r+g+++ ++++  r++d
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGWLTiQHGKpTRVND 73
                79*************************964334477776 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.5e-07   0.00037      26      61 ..      35      70 ..      33      72 .. 0.94
   2 ?    0.2   0.0      0.49   7.3e+02      13      32 ..     192     213 ..     189     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.5e-07
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTE CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgrpkl 61
                +e++e +gv r++  evL++L + G+ ++++g+p++
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTR 70
                89*******************************986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.49
                 HCHHHH..HHCCCHHCHHCCCT CS
        TrmB  13 vYlaLl..klgpatadeiaeel 32 
                  Yl+Ll  + ++ t dei e++
  EHU00601.1 192 FYLTLLdlCDKQPTQDEIVECV 213
                 79***98888899999998875 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       8.3   1.2e+04      30      36 ..      49      55 ..      41      69 .. 0.56
   2 !   19.8   0.0   5.3e-07   0.00079      27     106 ..     122     199 ..     100     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8.3
         FCD 30 eelleal 36
                +e+l++l
  EHU00601.1 49 REVLQRL 55
                2222222 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.3e-07
         FCD  27 aeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeHraildA 106
                 ++++e+l+a ++ ++  ++++++e+d++  r la a+gnp    +l+ l     r+ r ++s+pe ++ + +   ++ld 
  EHU00601.1 122 EKAREVLQAVAQTDD--QVDSYTELDYRVFRGLAFASGNPIYGLILNGLKGLYTRVGRHYFSNPEARKVAREFYLTLLDL 199
                 466777777777766..4556*************************************9998888777666656666665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2     4e-05     0.059      22      49 ..      35      62 ..      33      64 .. 0.95
   2 ?    2.6   0.0     0.081   1.2e+02       5      21 ..      79      94 ..      78     102 .. 0.80
   3 ?   -1.0   0.0         1   1.5e+03       3      19 ..     122     138 ..     122     144 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyve 49
                +el++ +g++++t +  Lq L + G+++
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGWLT 62
                59************************96 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.081
                HHHHHCT-CTTBSS-BH CS
    HTH_IclR  5 alaiLdalaeapqeltl 21
                +l iL+ la+ + + ++
  EHU00601.1 79 GLNILETLARLDHG-SV 94
                799*******9987.55 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1
                 HHHHHHHCT-CTTBSS- CS
    HTH_IclR   3 dRalaiLdalaeapqel 19 
                 ++a ++L+a+a+++  +
  EHU00601.1 122 EKAREVLQAVAQTDDQV 138
                 578899*****998765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   6.6e-06    0.0098      21      47 ..      35      61 ..      34      62 .. 0.96
   2 ?   -4.0   0.1       7.8   1.2e+04       7      13 ..      81      87 ..      80      88 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.6e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                reL+e +g++++t+++ l+rL ++G++
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGWL 61
                8************************97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.8
      HTH_24  7 kILelLq 13
                +ILe+L 
  EHU00601.1 81 NILETLA 87
                7999886 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.5e-05     0.023      22      56 ..      31      65 ..      12      68 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
                    SB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 22 vvktkdlaerLnvspssVsemlkkLekdGyveyek 56
                     +   +l+e ++v   +  e l++L++dG +  ++
      EHU00601.1 31 LPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65
                    566789************************98877 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.7e-05     0.071      29      61 ..      35      67 ..      28      70 .. 0.94
   2 ?   -2.9   0.0       6.1   9.2e+03      31      46 ..     102     117 ..      79     119 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGk 61
                +e++e  ++ ++ l+ +l++L++ g+++ + Gk
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGWLTIQHGK 67
                699***************************997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.1
                 HHHHHTS-HHHHHHHH CS
        Rrf2  31 iaerqnispsylekil 46 
                 ++ r+nis  ++++ l
  EHU00601.1 102 LSVRTNISSIFISRAL 117
                 4446777777777665 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.5e-05     0.081      29      56 ..      37      64 ..      35      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.5e-05
        PaaX 29 llaelGiseslvRaalsRlakaGwlvre 56
                l + +G+  +++R  l Rla++Gwl+ +
  EHU00601.1 37 LSELIGVTRTTLREVLQRLARDGWLTIQ 64
                66789********************865 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00013       0.2      16      51 ..      35      68 ..      35      69 .. 0.92
   2 ?   -2.4   0.0       3.8   5.6e+03      12      36 ..      91     120 ..      80     120 .. 0.56
   3 ?   -2.9   0.0       5.2   7.8e+03       3      17 ..     128     143 ..     125     144 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      HTH_28 16 reaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                re++++ g++r+t++  ++r+   G+  L  ++++p
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGW--LTIQHGKP 68
                799********************999..88888877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.8
      HTH_28  12 Ghsvre.....aArelgisrrtvyrWikry 36 
                 ++sv++     ++ + +is+  ++r ++ y
  EHU00601.1  91 HGSVPAlidnlLSVRTNISSIFISRALRHY 120
                 445555444445555566666666666655 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5.2
      HTH_28   3 leiikllaaGh.svre 17 
                 l+++ +  +++ s++e
  EHU00601.1 128 LQAVAQTDDQVdSYTE 143
                 3344444456677776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011      0.16      21      48 ..      35      62 ..      20      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 21 seLakklgvskstvtrvldrLekkGlie 48
                 eL + +gv+++t+ +vl rL ++G+++
  EHU00601.1 35 RELSELIGVTRTTLREVLQRLARDGWLT 62
                59************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1792.93
//
Query:       EHU00602.1  [L=176]
Description: oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-41  142.7  13.4    1.3e-41  142.5  13.4    1.0  1  DsbB      Disulfide bond formation protein DsbB
  ------ inclusion threshold ------
       0.81    9.9   6.7       0.35   11.1   0.3    2.6  3  DPM3      Dolichol-phosphate mannosyltransferase subunit 3 (D


Domain annotation for each model (and alignments):
>> DsbB  Disulfide bond formation protein DsbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5  13.4   1.5e-45   1.3e-41       2     146 ..      12     159 ..      11     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 1.5e-45
                 HHHHHHHHHHHHHHHHHHHHHHCTTTTSXXSHHHHHHHHHHHHHHHHHHTTSSSS...HHHHHHHHHHHHHHHHHHHHHHHHHHHSX-SSTSB-B.SXX CS
        DsbB   2 rllllllalaslallalAlyfqhvlglePCelCvyqRlallliallallaaiapk...rllllllallaalvgaalaarhvgvellpwdpasCgs.lpt 96 
                 r ++lllal++lal ++Al+fqh lg++PC++C+y R+al++++ +++l+++ p+   +l++++l++++a+ g+ l+  h+ + l+p+++++C + +++
  EHU00602.1  12 RGAWLLLALSALALELTALWFQHGLGYKPCVMCIYVRCALFGVMGAGILGFLMPRspvQLVAIVLWIYSAWEGLRLSYEHTMILLHPNPFVTC-DfAAR 109
                 678************************************************999999999*********************************.999** PP

                 XTTSXHHHHSSTTTTTXXSSSSSSSXECTTSEHHHHHHHHHHHHHHHHHH CS
        DsbB  97 fpealpldewlpevfkatgdCgeadwkllglsmaqwnllifalllllllv 146
                 fp +lpld+wlp+vf a+gdC+e++w++l l m+qw++ ifa++ll+ ++
  EHU00602.1 110 FPAWLPLDKWLPSVFVASGDCSEQAWRFLSLAMPQWMIGIFAVYLLVGVL 159
                 *********************************************99875 PP

>> DPM3  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.028   2.5e+02      17      64 ..      14      62 ..       9      65 .. 0.75
   2 ?   -1.3   0.1       0.3   2.7e+03      12      28 ..      71      87 ..      66     104 .. 0.57
   3 ?   11.1   0.3   3.9e-05      0.35      31      60 ..     132     161 ..     105     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.028
        DPM3 17 lwlalllrlvslplskvqdev.vpvlPlwalvlfGayslatlgygvltf 64
                +wl+l l+ + l+l+  + ++ + + P ++ + + + +  ++g g+l f
  EHU00602.1 14 AWLLLALSALALELTALWFQHgLGYKPCVMCIYVRCALFGVMGAGILGF 62
                7999999999999877776654778888888887777777777777655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
        DPM3 12 llllalwlalllrlvsl 28
                l++++lw++   + + l
  EHU00602.1 71 LVAIVLWIYSAWEGLRL 87
                34445555555444433 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 3.9e-05
        DPM3  31 skvqdevvpvlPlwalvlfGayslatlgyg 60 
                 ++ ++ + +++P w++ +f++y+l+ +++ 
  EHU00602.1 132 EQAWRFLSLAMPQWMIGIFAVYLLVGVLVL 161
                 78999999****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1541.62
//
Query:       EHU00603.1  [L=148]
Description: uncharacterized UPF0153 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-07   31.2  11.5    5.2e-07   30.3  11.5    1.5  1  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3  11.5   2.9e-11   5.2e-07       2      85 .]      24      92 ..      23      92 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.9e-11
    CxxCxxCC  2 CkeCgaCCkelkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetklCkiYeeR....pkicrlfpasekeellaraetCa 85
                C++Cg+CC    +kl+++d+++++ ++v               +C +l+ +t++C++Y++R     ++++l+++ + +++ ++++tCa
  EHU00603.1 24 CDGCGQCCL---NKLQDADTDEIYFTNV---------------ACNQLNIKTCQCRNYARRfeyeEDCIKLTRE-NLTTFDWLPRTCA 92
                *********...****************...............*********************99******99.8***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1202.88
//
Query:       EHU00604.1  [L=219]
Description: putative isomerase/hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-55  186.3   0.0    7.3e-55  186.0   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   0.0   4.1e-59   7.3e-55       1     211 [.      18     213 ..      18     218 .. 0.94

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 4.1e-59
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE- CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsa 96 
                    k+vc+g nya+h++e+g+a    p      epv+f+k+as+l+  ++p+++P+   ++++EvELav ig+ l+++ s + +++aiaGy +++D++ 
     EHU00604.1  18 KVVCVGSNYAKHIKEMGSA---TPT-----EPVIFIKPASALCDLRQPLSIPDAFGEVHHEVELAVLIGTTLKQA-SEAHVAKAIAGYGVALDLTL 104
                    689*************955...455.....899******************************************.999***************** PP

                    SBGGG---.HH..HHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES...... CS
  FAA_hydrolase  97 Rdlqaeekapl..gwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgae 190
                    Rdlqa  k ++  +w ++k+fd+++p++ +i  ++  +dp++ +l+l vnge++qd+nt+dmi+++  liah+s+ +tL++Gd+iltGTp+gvg  
     EHU00604.1 105 RDLQAGLK-KAgqPWEKAKAFDNACPLSGFIPVAEFTGDPQNTDLKLVVNGEVRQDGNTSDMIHKILPLIAHMSQYFTLHAGDVILTGTPEGVG-- 197
                    ******99.44458888**************88899999*****************************************************98.. PP

                    .S--EE--TT-EEEEEETTTE CS
  FAA_hydrolase 191 eeslkflkdgDeveveieglG 211
                          ++ gD++ev+  g G
     EHU00604.1 198 -----PMRSGDTLEVSFAGHG 213
                    .....49********998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1889.12
//
Query:       EHU00605.1  [L=91]
Description: YcgL family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-31  109.1   0.1    1.3e-31  108.8   0.1    1.1  1  YcgL      YcgL domain


Domain annotation for each model (and alignments):
>> YcgL  YcgL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.1     7e-36   1.3e-31       1      73 []       3      75 ..       3      75 .. 1.00

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 7e-36
        YcgL  1 caiYksskkeetYLYvekkddfsevPeeLlesfGkpefvmeleLskerkLaradaekVlaaLeeqGfylqlpp 73
                c iY+s+ +++tYLYvekkddfs+vP++Ll+ fGkp+++m ++L++++kLa+ad++kV++ L+eqG+ylq+pp
  EHU00605.1  3 CVIYRSPVRDQTYLYVEKKDDFSRVPDALLKGFGKPQLAMVINLAQRDKLANADINKVKQGLSEQGYYLQIPP 75
                9***********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 753.51
//
Query:       EHU00606.1  [L=232]
Description: cell division inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-34  118.3   0.0    1.8e-34  117.8   0.0    1.2  1  MinC_N    Septum formation inhibitor MinC, N-terminal domain
    1.5e-31  108.4   0.1    2.8e-31  107.5   0.1    1.5  1  MinC_C    Septum formation inhibitor MinC, C-terminal domain


Domain annotation for each model (and alignments):
>> MinC_N  Septum formation inhibitor MinC, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0     2e-38   1.8e-34       1     103 [.       1     103 [.       1     104 [. 0.98

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2e-38
      MinC_N   1 leqapvelksskltvlvleLhtsdlerikqkLsdkiaeaPklfknapvvldvskleekvdlkaLkelisraglrivgvsgckdkaskeeimkagLpvLs 99 
                 + q p+e+k+s++t++v++Lh+++ e+i ++L+dki +aP ++knapvvl+v++l+  v++k + +++s++glrivgvsgckd+a+k++i+ agLpvL+
  EHU00606.1   1 MPQSPIEFKGSSFTLSVVHLHHHEPEVIRKALQDKIDQAPDFLKNAPVVLNVAALNAAVNWKQMLQAVSATGLRIVGVSGCKDEALKKLIARAGLPVLA 99 
                 7799*********************************************************************************************** PP

      MinC_N 100 kske 103
                 + ke
  EHU00606.1 100 EGKE 103
                 9886 PP

>> MinC_C  Septum formation inhibitor MinC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.1   3.1e-35   2.8e-31       1     101 [.     128     228 ..     128     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 3.1e-35
                 EE-S-B-TT-EEEES.SEEEESC-B-TT-EEEESS-EEEEEEE-SEEEE-TTS-TT--EEEEEE--SEEEET.TEEEE--TT-..--S-EEEEE..ETT CS
      MinC_C   1 vvkktvRsGqqieae.gdlvvlgdVnpGAeviAdgniivlGalrGrahAGakgneearifalklepeqlrIa.dyiaraseeeeeekepeiaqisleed 97 
                 +v+++vRsGqqi+a+  dl+v+++V++GAe++Adgni+++G +rGra+AGa+g++e++if+++l++e+++Ia +y+    ++++ee  +++a+++l+++
  EHU00606.1 128 IVNTPVRSGQQIYARnADLIVTSSVSAGAELVADGNIHIYGMMRGRALAGASGDRECQIFCTNLSAELVSIAgEYWI--MDQIPEEYFAKAARLCLQDG 224
                 6899************************************************************************9..899988999*********** PP

                 EEEE CS
      MinC_C  98 kivi 101
                 +++i
  EHU00606.1 225 ALTI 228
                 9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2103.71
//
Query:       EHU00607.1  [L=270]
Description: membrane ATPase of the MinC-MinD-MinE system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-21   75.5   0.1    7.8e-21   74.8   0.1    1.3  1  AAA_31          AAA domain
      2e-20   73.2   0.1    2.7e-20   72.7   0.1    1.2  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
    1.1e-17   64.3   0.8    1.7e-16   60.4   0.8    2.5  1  ParA            NUBPL iron-transfer P-loop NTPase
    3.8e-10   39.5   3.0    1.7e-09   37.3   2.1    2.0  2  ArsA_ATPase     Anion-transporting ATPase
    9.2e-10   38.2   1.1      2e-09   37.1   1.1    1.5  1  MipZ            ATPase MipZ
      3e-07   30.2   0.0    5.4e-07   29.3   0.0    1.6  1  CBP_BcsQ        Cellulose biosynthesis protein BcsQ
      1e-05   25.1   0.1    0.00073   19.1   0.1    2.5  2  Fer4_NifH       4Fe-4S iron sulfur cluster binding proteins, 
    0.00041   20.1   0.0    0.00063   19.5   0.0    1.4  1  AAA_24          AAA domain
      0.002   18.0   3.1        2.4    8.0   0.0    2.8  3  AAA_26          AAA domain
     0.0035   17.2   0.2     0.0081   16.0   0.1    1.6  2  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
  ------ inclusion threshold ------
       0.01   15.1   0.2       0.02   14.2   0.2    1.4  1  VirC1           VirC1 protein
      0.011   15.3   2.0      0.022   14.4   1.2    1.8  2  SRP54           SRP54-type protein, GTPase domain
       0.04   14.0   0.5       0.21   11.7   0.4    2.1  1  DUF87           Helicase HerA, central domain
      0.046   14.0   0.5       0.13   12.5   0.5    1.7  1  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C
       0.46   10.0   2.7        1.4    8.5   2.2    2.0  2  AAA_25          AAA domain
       0.72    9.5   2.5        1.6    8.4   2.5    1.5  1  AAA_30          AAA domain


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.1     7e-24   7.8e-21       2     170 ..       3     166 ..       2     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7e-24
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQ.anattglgiekneiektlyevlieeknikeaiiktk.venldlipssidLaeaeielv 98 
                 ++I+++  KGGvGKTT+s ++a  la++gkk+ ++D+D    n+   +g+e +++  ++++v+  ++++++a+i++k +e+l+++p+s      +++ +
  EHU00607.1   3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGlRNLDLIMGCE-RRVVYDFVNVIQGDATLNQALIRDKrTEQLYILPASQT---RDKDAL 97 
                 89************************************8637999999975.556689999999999**9999988868899*****964...344443 PP

      AAA_31  99 elekkeeilkellekv.kdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkk 170
                 + e  e++    l+++ + e+D+i+ D p  +++ +  aL+ +d+ ii +++e  +++  +++l  i++  ++
  EHU00607.1  98 TREGVEKV----LNDLaEMEFDFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIISSKSRR 166
                 44444444....44441568************************************99999999988876665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.1   2.4e-23   2.7e-20       1     128 []       5     227 ..       5     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 2.4e-23
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i+++s+kGGvGKTt +a++a+ la++g++++++D+D    nl +++g e ++                                               
  EHU00607.1   5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYdfvnviqgdatlnqalirdkrteqlyilpasqtrdkdaltregve 103
                 79******************************************99999999999999***************************************** PP

                 ................................................CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS...-TTCHHHHHHHHHH CS
                 ................................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ................................................dlkrllellealgkkkall..lkiagvvlnrvdgeneetllkealeelkqr 103
                                                                 d +r+l+++++ +++ +         ++l+r+++ + ++  + ++e++++ 
  EHU00607.1 104 kvlndlaemefdfivcdspagietgalmalyfadeaiittnpevssvrDSDRILGIISSKSRRAETSqePVKEHLLLTRYNPGRVNRGDMLSMEDVLEI 202
                 *********************************************************777776666667777889999999999999999999999977 PP

                 CTS-EEEEEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 104 ygvpvlgviprdeavaeapargepv 128
                 +++p++gvip+d++v +a ++gepv
  EHU00607.1 203 LRIPLVGVIPEDQSVLRASNQGEPV 227
                 7*********************997 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.8   1.5e-19   1.7e-16       3     245 ..       2     246 ..       1     247 [. 0.79

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.5e-19
        ParA   3 kkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqsekkli...PveakgikvmSigfllesedeavvwrGpmksk 98 
                  ++i+v+SgKGGVGK+t ++ +A+ La+kg+k+ ++D Di   ++  ++g+e++ +    + ++    +++  i+    + l     +    + ++  +
  EHU00607.1   2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQgdaTLNQALIRDKRTEQLYILPASQTRDKDALTRE 100
                 579**************************************************6554443333321122334455555665555566777778888999 PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteif..gkggge 195
                  ++++l+d +  e D+++ D P G    +l  +     ++a+i t p+  ++ d  + + ++++ + +     e ++ +   +  +  ++      ++e
  EHU00607.1 101 GVEKVLNDLAEMEFDFIVCDSPAGIETGALMALYFA--DEAIITTNPEVSSVRDSDRILGIISSKSRRAETSQEPVKEHLLLTRYNPGRVNrgDMLSME 197
                 99**********************988777665555..89*********************99888887777777766555544444444311445788 PP

        ParA 196 klaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 ++ e l +pl+g ip d+++ +as++g+p++l++ es+a ka+++ +e++
  EHU00607.1 198 DVLEILRIPLVGVIPEDQSVLRASNQGEPVILDA-ESDAGKAYADTVERL 246
                 89999999*********************99886.788888888887765 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   2.1   1.5e-12   1.7e-09       3      38 ..       5      40 ..       2      45 .. 0.91
   2 ?    0.8   0.0       0.2   2.3e+02     114     135 ..     103     124 ..      68     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.5e-12
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38
                 +++ +GKGGVGKtt+saa+a+ l++kgkk+++i  D
   EHU00607.1  5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40
                 45678***************************9877 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
                  HHHHHHHHCSSSSEEEEESBSC CS
  ArsA_ATPase 114 eellkyvkeeeydvvvlDtaPT 135
                  e++l+ + e+e+d +v D++  
   EHU00607.1 103 EKVLNDLAEMEFDFIVCDSPAG 124
                  4566666799999999998543 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   1.1   1.8e-12     2e-09       1     130 [.       3     144 ..       3     170 .. 0.69

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.8e-12
                 EEEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHH..HHHHHHHHHT------EEE-.SSS-H........HHHTTS-HHHHHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlaryle..nraataerkglsLplpeala.lseae........eaeveeeeeaevae 88 
                 ++iv++  kGG Gk+t +  +a+ L++kG++  +id+d+  r l   ++   r+     + ++ + +  +a ++++         +++  +++  + + 
  EHU00607.1   3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGceRRVVYDFVNVIQGDATLNQAlIRDKRteqlyilpASQTRDKDALTREG 101
                 58************************************9888887776521444333333333333222220223220001111134566777777789 PP

                 HHHHHHHH.HHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEE CS
        MipZ  89 leelvadl.eaeldfividtPGsdsalsrlahsladtlvtPln 130
                 +e++++dl e e+dfiv d+P   ++ + +a  +ad  +   n
  EHU00607.1 102 VEKVLNDLaEMEFDFIVCDSPAGIETGALMALYFADEAIITTN 144
                 999999972569***********************98665444 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.8e-10   5.4e-07       3     151 ..       4     149 ..       1     229 [. 0.87

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.8e-10
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDlspd.nlLrlhFnvdieqregwaraeldgapwrqaale..yapgldllPfGelnveekenlqql 98 
                 +++++  +GGvG+t+ +aa+a+ l + g++ +viD+      L l    + +    +++    +a ++qa ++   +++l +lP  +++++++     +
  EHU00607.1   4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGlRNLDLIMGCERRVVYDFVNVIQGDATLNQALIRdkRTEQLYILPASQTRDKDAL----T 98 
                 67777789***************************97642568999999999999999999999999999997335789*****9999999998....4 PP

    CBP_BcsQ  99 aekaeallaalkelkeqyrwillDlpagasaltrellaladlvllvvepdanc 151
                 +e  e++l+ l+e   ++++i+ D pag ++ +  +l  ad  +  ++p++++
  EHU00607.1  99 REGVEKVLNDLAE--MEFDFIVCDSPAGIETGALMALYFADEAIITTNPEVSS 149
                 4555555555555..58*****************99999*********99865 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   6.5e-07   0.00073       4      38 ..       7      41 ..       3      85 .. 0.85
   2 ?    3.9   0.0     0.028        31     182     240 ..     184     242 ..     106     260 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.5e-07
   Fer4_NifH  4 aiyGkGGiGksttsqnlsaalaemgkkvlivGCDP 38
                   GkGG+Gk+t+s+ +++ la++gkk +++  D 
  EHU00607.1  7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41
                457*************************9998775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.028
   Fer4_NifH 182 nsrkvdderel.iekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrel 240
                 n  +v++++ l +e+  e l ++++ v+P d+ v +a+ + + vi  a+ s+ +k y + 
  EHU00607.1 184 NPGRVNRGDMLsMEDVLEILRIPLVGVIPEDQSVLRASNQGEPVILDAE-SDAGKAYADT 242
                 444455555442456677889999********99999999988875444.3446666655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.6e-07   0.00063       5      56 ..       6      64 ..       2     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.6e-07
      AAA_24  5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfldev 56
                ++  G+ g+GKTt+ + +       g+k+++id++ Gl++ld + + + + + df++ +
  EHU00607.1  6 VVTSGKGGVGKTTSSAAIatglaqkGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVI 64
                5667*************99*********************9987766555555555555 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   2.1    0.0029       3.2       3      32 ..       5      34 ..       3      37 .. 0.90
   2 ?   -0.5   0.0      0.83   9.4e+02      72     114 ..      87     129 ..      62     139 .. 0.63
   3 !    8.0   0.0    0.0021       2.4     154     194 ..     152     217 ..     136     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0029
      AAA_26  3 ifvtgtdtgvGKTvvslgLvralkrkgvkv 32
                i+vt+   gvGKT+ s++++  l +kg k+
  EHU00607.1  5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKT 34
                8999999******************99886 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.83
      AAA_26  72 plspelaarqegedid.lekivkelek.dadivvVEGagglgvpi 114
                 p+s++  ++  ++  + +ek+ ++l++ + d++v++   g+ ++ 
  EHU00607.1  87 PASQTRDKDALTR--EgVEKVLNDLAEmEFDFIVCDSPAGIETGA 129
                 3444444433332..237888877777688999999888777665 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0021
      AAA_26 154 qknvrvlGvilNkvrnpe..........................nvetlekksgipvlGvvPylpdl 194
                 +   r+lG+i +k r +e                           +e + +   ip++Gv+P ++++
  EHU00607.1 152 D-SDRILGIISSKSRRAEtsqepvkehllltrynpgrvnrgdmlSMEDVLEILRIPLVGVIPEDQSV 217
                 3.689********87775666777888888899999999999999*****************99876 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   7.2e-06    0.0081       1      34 [.      10      43 ..      10      48 .. 0.92
   2 ?   -3.0   0.0       4.6   5.2e+03     123     142 ..     137     156 ..      97     172 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.2e-06
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGq 34
                G+  +GK+T ++ ++  +++kg+k+v++D D+G 
  EHU00607.1 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGL 43
                66789***************************95 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
      CLP1_P 123 leliealepdvvvvldqeel 142
                  e+i + +p+v  v d+++ 
  EHU00607.1 137 DEAIITTNPEVSSVRDSDRI 156
                 45555566666666665554 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.8e-05      0.02       3      38 ..       4      39 ..       2      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
       VirC1  3 litfcslkGGaGkttalmglcsalasdgkrvalfea 38
                +i ++s kGG Gktt+  ++ + la++gk+  + + 
  EHU00607.1  4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDF 39
                78999***********************99877665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.2     2e-05     0.022       4      38 ..       6      40 ..       3      42 .. 0.88
   2 ?   -1.6   0.0       1.6   1.8e+03      68      91 ..      98     121 ..      75     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                ++  G  G+GKTt+ a +a  l ++gkk++++  D
  EHU00607.1  6 VVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40
                5667999**********************999877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHTTSSEEEEEE CS
       SRP54  68 paavakeavekakeekidvvlvDT 91 
                 + + +++ ++   e ++d++++D+
  EHU00607.1  98 TREGVEKVLNDLAEMEFDFIVCDS 121
                 334445555566778899999996 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   0.00019      0.21      30      61 ..      10      40 ..       9     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
       DUF87 30 gsTGsGKSntvavLleellekkgatililDpH 61
                g+ G+GK++  a +   l+ +kg +++++D +
  EHU00607.1 10 GKGGVGKTTSSAAIATGLA-QKGKKTVVIDFD 40
                778****************.99*******976 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   0.00012      0.13       4     103 ..       4     120 ..       2     131 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
  CobA_CobO_BtuR   4 lihvytGdG.KGKttAAlGlalRalgaglkvlvvqFlKg.eke.....sgElaalkkl........eielerlg..........kegfvkmeeee 73 
                     +i v  G+G  GKtt++  +a   + +g+k +v+ F  g + +       E++++  +        +                 ++ ++   +++
      EHU00607.1   4 IIVVTSGKGgVGKTTSSAAIATGLAQKGKKTVVIDFDIGlR-NldlimGCERRVVYDFvnviqgdaT------LnqalirdkrtEQLYI-LPASQ 90 
                     57778887537*************************77743.2234435577776665655544330......1233344444223444.77888 PP

  CobA_CobO_BtuR  74 keedaaaakealekakealaseeydlvvlD 103
                     ++++ a ++e++ek+ + la+ e+d++v D
      EHU00607.1  91 TRDKDALTREGVEKVLNDLAEMEFDFIVCD 120
                     99999999********************99 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.2    0.0012       1.4      35     150 ..       5     121 ..       1     125 [. 0.61
   2 ?   -3.4   0.0       5.5   6.2e+03      33      46 ..     224     237 ..     212     250 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
      AAA_25  35 lallaGapgtGKttlaldlalava.tGkpwlg.pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrggtlltadv 130
                 +++  G +g+GKtt    +a  +a +Gk+    ++    ++  ++ +++++  +   +  +  ++++++ l   ++ ++   lp  +++++++l+ + v
  EHU00607.1   5 IVVTSGKGGVGKTTSSAAIATGLAqKGKKTVViDFDIGLRNLDLIMGCERR-VVYDFVNVIQGDATLNQALIRDKRTEQlYILPASQTRDKDALTREGV 102
                 57889***********99999999766655445444444444444444444.45555555555554444444444444333334444556666677778 PP

      AAA_25 131 daleaaieevegvrlvviDp 150
                 +++ +++ e+e  +++v D+
  EHU00607.1 103 EKVLNDLAEME-FDFIVCDS 121
                 88888888865.88888775 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.5
      AAA_25  33 gelallaGapgtGK 46 
                 ge ++l + +++GK
  EHU00607.1 224 GEPVILDAESDAGK 237
                 33333334444443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.5    0.0015       1.6      20      51 ..       5      36 ..       2      38 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrvig 51
                ++v  G  G GKtt+ +a++  ++++g++ ++
  EHU00607.1  5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36
                67899*******************99866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1939.96
//
Query:       EHU00608.1  [L=89]
Description: cell division topological specificity factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-25   86.6   0.2    9.3e-25   86.4   0.2    1.1  1  MinE      Septum formation topological specificity factor Min


Domain annotation for each model (and alignments):
>> MinE  Septum formation topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.2   5.2e-29   9.3e-25       1      68 []      14      82 ..      14      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 5.2e-29
                XXXSSS-EEEEEEEEES..SS--TTCCHHHHHHHHHHHHHH-..-SEEEEEEE---E..EEEEEEEE-- CS
        MinE  1 SaevAKeRLkliLahdR.aslspelleqlkeeileviskYveideekvevklekekedvsvLeaniplk 68
                +a++AKeRL++i+a++R ++ +p++l+qlk++il+vi kYv+id++ v+v+l+++ +d s+Le+n++l+
  EHU00608.1 14 TANIAKERLQIIVAERRrGDSEPHYLPQLKRDILDVICKYVKIDPDMVTVQLDQKGDDISILELNVTLP 82
                69**************999**********************************663478*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 722.86
//
Query:       EHU00609.1  [L=373]
Description: ribonuclease D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-41  141.8   0.0    2.9e-41  141.1   0.0    1.3  1  DNA_pol_A_exo1  3'-5' exonuclease
    1.4e-12   47.4   1.3    2.6e-12   46.5   0.2    2.1  3  HRDC            HRDC domain


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0   3.2e-45   2.9e-41       2     176 .]       4     171 ..       3     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 3.2e-45
                     EEEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHH CS
  DNA_pol_A_exo1   2 eivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlardf 96 
                       +++++ l+e++++ +++++va+DtE+ ++++  ++ +l liql+++e+ ++idpl ++d   ++++ +ll+d  +tk++h+  +Dlev+ + f
      EHU00609.1   4 SLIDNDDHLAEVCQKARQHTAVALDTEFVRTRT--YYPQLGLIQLFDGEQLVLIDPLPVRD---WSPFIALLTDTRVTKFLHAGGEDLEVFLHRF 93 
                     67999****************************..**************************...9****************************** PP

                     TS--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHHH CS
  DNA_pol_A_exo1  97 gielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkele 176
                     g+ +++++dt++ a++ + + s++++s+++++++ +eldk+e +++w  arpl+e q++YAa+D+++ll+++++L  ++e
      EHU00609.1  94 GVLPQPMIDTQILAAFSGQPLSWGFASMVAHFTQ-VELDKSEARTDWL-ARPLTERQCQYAAADVHYLLPIAHQLMAQVE 171
                     **********************************.*************.**************************99985 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.5   1.4e+04      28      41 ..       8      21 ..       3      25 .. 0.69
   2 !   46.5   0.2   2.9e-16   2.6e-12       1      66 [.     213     277 ..     213     279 .. 0.97
   3 ?   -2.4   0.1      0.55   4.9e+03       4      22 ..     306     324 ..     304     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.5
                -HHHHHHHHHH--- CS
        HRDC 28 pdktLleiAeklPt 41
                +d++L e+ +k+ +
  EHU00609.1  8 NDDHLAEVCQKARQ 21
                67777777777655 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 2.9e-16
                 HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHH CS
        HRDC   1 qlallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeile 66 
                 qla l++L++wR ++Are+d++ ++v++++ L+++A+ +P +++eL  + g++ + ++ +g+++l+
  EHU00609.1 213 QLAALQRLAAWRLNVAREKDMAVNFVVREENLWKVARFMPGSQGELDHL-GLSGHEIRFHGRAMLA 277
                 7899********************************************9.************9997 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHHHTS- CS
        HRDC   4 llkaLrewReelAreedvp 22 
                  +ka +++ ++++++ +++
  EHU00609.1 306 AFKAIKALVQQVSEQSGLS 324
                 6788888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.33
# Mc/sec: 3356.65
//
Query:       EHU00610.1  [L=558]
Description: acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-110  369.9   0.0   1.6e-110  369.6   0.0    1.1  1  AMP-binding      AMP-binding enzyme
    4.6e-21   75.6   5.0    7.1e-21   75.0   0.4    2.9  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
     0.0066   16.7   0.0      0.018   15.3   0.0    1.8  1  AMP-binding_C_2  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.073   13.2   0.1       0.17   12.0   0.1    1.6  1  DUF4235          Protein of unknown function (DUF4235)
       0.22   11.5   0.2        6.3    6.9   0.0    2.3  2  Pept_S41_N       Peptidase S41 N-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.6   0.0  4.6e-114  1.6e-110       1     422 [.      29     460 ..      29     461 .. 0.86

  Alignments for each domain:
  == domain 1  score: 369.6 bits;  conditional E-value: 4.6e-114
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97 
                  +e+++ ++ +++a+++   gq++TYr+lde+++++Aa+L+ +l +++g rVa+++pn +++ val+++l+aG+vvv +np +t++el++ l+ds+a++
   EHU00610.1  29 FEQAVVRYAGQPAFYN--MGQKMTYRQLDEKSRAFAAYLQhELRLQPGARVALMMPNLLQYPVALFGVLRAGMVVVNVNPLYTPRELKHKLNDSGASA 124
                  7889999*******77..9*********************99******************************************************** PP

                  EEETCTCCCHHHHHHHHSCC-EECEEEEE...SCCS-HCCHCCCHCCCCSCTTS.........................-TSCCCS-BTTSEEEEEEE CS
  AMP-binding  98 liatvdselleklleaaakleavklvivl...dadellkeeelkeeeeseekae.........................kpeeeeelkpddlayiiYT 167
                  ++  + s+ ++ l+++ a+  avk+v+++   d+ ++ k++ +++  +     +                          p + +++++ddla+++YT
   EHU00610.1 125 IV--IVSNFAHTLEKVVAE-TAVKHVVLTrmgDQLAPVKATLVNFVVK-----YvkrlvpkyhlpgaisfrhvletgasMPYRRPQVSNDDLAFLQYT 214
                  **..555555555555543.4555554440004444444444444443.....2334567889999*************55566689*********** PP

                  --SSSS-EEEEEEHHHHHHHHHHHHHHHCSC.CTT.T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH.HHHHHHHHHHHT-SEEEEEHH CS
  AMP-binding 168 SGTTGkPKGVmlshrnlvanvaslkletrfk.lke.ddvvlsilplahifglilelllallsGatvvllpkdaald.pklllelieklkvtviagvPr 262
                  +GTTG  KG+ml+hrn+ an+ + k  t+ k l++ ++ v++ lpl+hif+l+++ ll++  G++ vl+++  ++d p ++++ ++k+  t i+gv++
   EHU00610.1 215 GGTTGVAKGAMLTHRNMQANLEQTKA-TYGKlLRDgKECVVTALPLYHIFALTVNGLLFVELGGQNVLITN--PRDiP-AFVKEMAKYPFTAITGVNT 308
                  ***********************873.2333244447777888*************************994..45645.56688888*********** PP

                  HHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE CS
  AMP-binding 263 vleallesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvp 360
                  +++all++++++    + d+s lrl   gg ++++++++++++l+g+ +legYGlTE+++ v+ +++ + +  +gs+G p+p ++v i+De+ g++vp
   EHU00610.1 309 LFNALLNDDNFN----KLDFSTLRLSAGGGMAVQKAVAERWEKLTGHYLLEGYGLTECSPLVS-VNPYDINCHTGSIGLPVPSTDVIILDEN-GNEVP 400
                  *******76666....56*******999**********************************9.5556666688*****************9.***** PP

                  TTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 361 dgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +ge+Gel++rgp+vm gY+++peatae+++ + +wl++GD++++d++G ++iv+Rkkd+i +
   EHU00610.1 401 TGEPGELCIRGPQVMLGYWQHPEATAEVLK-N-GWLHSGDIVTVDHEGFIRIVDRKKDMILV 460
                  *****************************8.4.7**************************76 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4      0.17   6.1e+02      27      63 ..     141     184 ..      89     192 .. 0.63
   2 !   75.0   0.4     2e-24   7.1e-21       1      76 []     469     543 ..     469     543 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
                    ---EEEEEE.---.-.--HHHHHHHHH....HHHT-TTTS-SEE CS
  AMP-binding_C  27 ealvafVvl.kdg.s.ealeeeLkahv....rkelgpyavpkkv 63 
                    e++v  Vvl + g + ++++++L+ +v    ++ +++y  p ++
     EHU00610.1 141 ETAVKHVVLtRMGdQlAPVKATLVNFVvkyvKRLVPKYHLPGAI 184
                    44555566532233223333343333322225566666666655 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 2e-24
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E +l++hp+V+eaa++Gvp e+ Gea++++Vv kd+ ++++eeL  h+r++l  y+vp+ v+f delpkt  GK
     EHU00610.1 469 EIEDVLMQHPKVREAAAIGVPSELSGEAVKVCVVKKDQ-SLTKEELLGHCRRQLTGYKVPRIVEFRDELPKTNVGK 543
                    8*********************************9854.5689*******************************99 PP

>> AMP-binding_C_2  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     5e-06     0.018       1      47 [.     462     508 ..     462     549 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5e-06
                      TEEE-HHHHHHHHHT-TTEEEEEEEEEEEETTEEEEEEEEEE-TT-- CS
  AMP-binding_C_2   1 GvnvfPsqieevlkeieevepeYqivvtregelDelevkvEvkegfs 47 
                      G nv+P +ie+vl++ ++v +   i v  e + + ++v v  k++  
       EHU00610.1 462 GFNVYPNEIEDVLMQHPKVREAAAIGVPSELSGEAVKVCVVKKDQSL 508
                      89*******************99999999988888888887777543 PP

>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.8e-05      0.17       8      30 ..     329     351 ..     325     355 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
     DUF4235   8 lglvaGavagkafaavWkkvtge 30 
                 l++++G++++ka+a+ W+k+tg+
  EHU00610.1 329 LSAGGGMAVQKAVAERWEKLTGH 351
                 799******************97 PP

>> Pept_S41_N  Peptidase S41 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0018       6.3      17      43 ..      10      36 ..       9      45 .. 0.88
   2 ?    2.1   0.1     0.054   1.9e+02      33      48 ..     307     325 ..     300     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0018
  Pept_S41_N 17 ndevpdlidprkfssPedfFksLlykk 43
                  +vp+ i+ + + s  d+F++ + ++
  EHU00610.1 10 PADVPAEINADRYTSLVDLFEQAVVRY 36
                579******************988665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.054
  Pept_S41_N  33 edfFksLlykkd....drFS 48 
                 +++F++Ll+++     d FS
  EHU00610.1 307 NTLFNALLNDDNfnklD-FS 325
                 689*****977666666.87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4229.04
//
Query:       EHU00611.1  [L=197]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-46  157.9   0.0    1.4e-46  157.7   0.0    1.1  1  Slp       Outer membrane lipoprotein Slp family


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   7.5e-51   1.4e-46       1     151 [.      19     167 ..      19     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 7.5e-51
         Slp   1 LagCasvPeeirgesatel.slsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLdssgrPelsdeseGRflarvegFlDPaiykkgrlvTv 98 
                 L+gC+svP++i+g+sa ++ +l +v+++p+ y+g+e r+GGk+v+v+n++ ktrlei++ pLd+ +rP l+++s GR++a ++gF+DP++  k+++vTv
  EHU00611.1  19 LSGCVSVPDTIKGHSALPQqDLLRVMSNPALYVGQESRFGGKVVNVTNRNGKTRLEIATQPLDDGARPVLGASSVGRIYADIPGFVDPTDV-KDQYVTV 116
                 89**************9999***********************************************************************.******* PP

         Slp  99 vGtlkgsetgkigeadytypvvevkgvklWpeeeveesyvkeyyyepywyykp 151
                 +Gt+kg+e gkigea+y+++vv+v+g+++W+ +++ +s +++   +p+ +y+p
  EHU00611.1 117 LGTIKGTEPGKIGEANYSFVVVDVRGYQRWHLTRQVVSPPEP--LDPWIWYGP 167
                 ******************************555555554443..468888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1511.47
//
Query:       EHU00612.1  [L=232]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-26   94.3   0.0    1.7e-26   93.5   0.0    1.3  1  Peptidase_M22  Glycoprotease family
  ------ inclusion threshold ------
       0.13   11.2   0.1       0.16   10.9   0.1    1.1  1  IMPDH          IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   1.9e-30   1.7e-26      23     133 ..      30     136 ..      29     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.9e-30
                    HHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCTSEC.SSCEEEEESSSTEE CS
  Peptidase_M22  23 elasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarleeke.efPvvllvsGghtq 117
                    e+a r H++r+lpl++e+l++ +l+l++ld+ a+++gPG+ftg+r+G+ +A+glal++ +P+ g+++l+ +a+ a  +++  +  v+ ++++++++
     EHU00612.1  30 EIAPRDHTQRILPLVAELLQAQQLELTELDVLAFGRGPGSFTGVRIGIGIAQGLALGAALPMAGISTLATLAQGAWRQHGAcR--VLTAIDARMGE 123
                    7899***********************************************************************97777777..*********** PP

                    EEEECTTEEEEEEEES CS
  Peptidase_M22 118 vylvkegryeilgetl 133
                    vy++   +y++ ++ +
     EHU00612.1 124 VYWA---EYQRDEDGI 136
                    ****...888766554 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.8e-05      0.16     152     221 ..      43     110 ..       2     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.8e-05
                 EE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 152 nvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgd 221
                  va+  +a++L  ++ d++  G GpGs   t v  g+G++q  A+ ++  +a       +a G  ++ g 
  EHU00612.1  43 LVAELLQAQQLELTELDVLAFGRGPGSF--TGVRIGIGIAQGLALGAALPMAGISTLATLAQGAWRQHGA 110
                 57888899999999*************7..55667************99999999999999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 2071.20
//
Query:       EHU00613.1  [L=632]
Description: ATP-dependent helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-35  120.3   0.0    1.7e-34  119.5   0.0    1.4  1  Helicase_C_2     Helicase C-terminal domain
    7.2e-08   32.6   0.3    3.8e-06   27.0   0.3    2.8  2  ResIII           Type III restriction enzyme, res subunit
      2e-07   30.9   2.2    0.00011   22.1   0.2    3.4  4  DEAD             DEAD/DEAH box helicase
     0.0012   18.5   0.0     0.0023   17.6   0.0    1.4  1  DEAD_2           DEAD_2
     0.0053   16.0   0.5      0.063   12.5   0.1    2.1  2  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.022   13.8   0.0      0.047   12.7   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
      0.041   13.9   0.0      0.098   12.7   0.0    1.6  1  Methyltransf_17  S-adenosyl-L-methionine methyltransferase
      0.096   12.2   0.1       0.19   11.2   0.1    1.5  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
       0.11   12.5   0.1       0.18   11.7   0.1    1.4  1  DeoRC            DeoR C terminal sensor domain
       0.17   11.7   0.0       0.28   10.9   0.0    1.3  1  DUF938           Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   9.2e-38   1.7e-34       4     170 ..     459     616 ..     456     617 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 9.2e-38
  Helicase_C_2   4 llevvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfsddllraviivglPfpnpkd 100
                   l+e+ +g+++ +++S+ +++e+++++++++    ++++v+ +e s+ ++l+e+ +  k +a+l+a+   +++EG+d+++d+l++vii +lPf +p+d
    EHU00613.1 459 LIEANKGRCFFLCTSHLMMRELAAEFRATM---TLPVLVQ-GETSKGQLLKEFID--KGNALLVATS--SFWEGVDVRGDALSLVIIDKLPFTSPED 547
                   6788999*********************98...59*****.**************..*********9..**************************** PP

  Helicase_C_2 101 peveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlre 170
                   p ++a++e ++ +g+ +++++++lp+a+ +++Q++GRliR+ dD+g++v++D+R+ ++ +++ ++++l++
    EHU00613.1 548 PLLKARMEDCRIRGG-DPFSDVQLPDAVITLKQGVGRLIRDTDDRGVLVICDQRLVSRPYGALFLSSLPP 616
                   ***************.*************************************************99987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   2.1e-09   3.8e-06       2     146 ..      18     232 ..      17     258 .. 0.69
   2 ?   -1.7   0.0       1.4   2.5e+03      42     101 ..     453     508 ..     450     525 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.1e-09
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG.......................... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef.......................... 74 
                 +++re Q e+ +++ e+++  ++ ++++++ TGtGKT+ +++ + r +k     k+++   +k+l +q++ +                           
  EHU00613.1  18 FKPREAQREMAQAVTEAVQ--NQGELVVEAGTGTGKTYAYLAPALRAKK-----KVIVSTGSKALQDQLYARDlptiakaltftgktallkgrsnylcl 109
                 789***************5..999******************9999999.....799999999*****9954435566666667777777777777777 PP

                 ...............................................GGGTGG....GEEEESSS-B--.............................. CS
      ResIII  75 ...............................................kkflseaykeigkkvsgdkkka.........................kekds 101
                                                                                                                +k++
  EHU00613.1 110 ermeqqsatggdmsvqaltdfvtlrswasqtpdgdistcagvtedspL--------------------WplvtstndnclgsdcplykdcfvvkARKKA 188
                 666666666666666666666666555555555555444444444440....................0444444444444455555555555588888 PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlga 146
                  +++++v++ + + ad+  +e      l  + dv+i+DEaH l +
  EHU00613.1 189 MDTDVVVVNHHLFLADLVVKE-GGFGELIPEADVMIFDEAHQLPD 232
                 899999999999999993322.22233334456********9876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                 HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII  42 aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 ak+++ l +++k  +++fl+ +  ++  +  ef+ ++  ++  +g+  +g+  k+   ++
  EHU00613.1 453 AKMMKPLIEANK-GRCFFLCTSHLMMRELAAEFRATMTLPVLVQGETSKGQLLKE---FI 508
                 677888888655.599999999999999999999888888877777777777666...33 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2     6e-08   0.00011       5      65 ..      29      81 ..      22     118 .. 0.79
   2 !    6.1   0.0    0.0048       8.5      97     138 ..     190     235 ..     180     258 .. 0.66
   3 ?   -1.9   0.0       1.3   2.4e+03     150     170 ..     382     400 ..     376     405 .. 0.64
   4 ?   -1.1   0.0      0.78   1.4e+03      45     110 ..     462     524 ..     451     539 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6e-08
                HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtln 65
                +++ +++ ++g+++v+a TG+GKT a+l p+l        + ++k+++ + +++L  q + 
  EHU00613.1 29 QAVTEAVQNQGELVVEAGTGTGKTYAYLAPAL--------RAKKKVIVSTGSKALQDQLYA 81
                33444555789*********************........567799999999999999875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0048
                 TCSEEEEEHHH.HHHHH.HCTSSH..CTTEEEEEEETHHHHHHTTT CS
                 xxxxxxxxxxx.xxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgr.lddll.stgkln..lsqvrflVlDEadrlldqgf 138
                 ++d+vv ++   l+dl+ ++g +   + +  ++++DEa++l d   
  EHU00613.1 190 DTDVVVVNHHLfLADLVvKEGGFGelIPEADVMIFDEAHQLPDIAS 235
                 4666666665515556666777666688889********9976533 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
                 HHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 150 pqitcdgklqrqvivlSATlp 170
                 ++  ++ k     i+ SATl 
  EHU00613.1 382 REVMDNRK--AAWIFTSATLA 400
                 44445545..349******98 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.78
                 STS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH.HTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
        DEAD  45 ktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl.dngvdivvgtpgrldd 110
                  ++ ++++++ ++ ++++ + +++  +    l vl + g++++ + l+++ d+g  ++v+t + +  
  EHU00613.1 462 ANKGRCFFLCTSHLMMRELAAEFRATMT---LPVL-VQGETSKGQLLKEFiDKGNALLVATSSFWEG 524
                 5666888888888888888888888888...5554.5566666555555447889999999876655 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0023     113     176 .]     182     247 ..     171     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                 HHHHHHHCCTSEEEEEHHHHTSCCCHHHHH..T..GCGCEEEECTCCCHHHHHHHCC-EEEECHHH CS
      DEAD_2 113 ylsrelledadiiilpYqyLldekireslk..gislknsivilDEAhNiedvceeaasveiseesl 176
                   +r+ + d d++++ ++++l   + ++    ++  +  ++i+DEAh + d++ +    ++s+++l
  EHU00613.1 182 VKARKKAMDTDVVVVNHHLFLADLVVKEGGfgELIPEADVMIFDEAHQLPDIASQYFGQQLSSRQL 247
                 467999999**************99999877778899*******************9999999886 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.081   1.5e+02       5      48 ..      42      80 ..      40      92 .. 0.79
   2 !   12.5   0.1   3.5e-05     0.063      78     121 ..     208     252 ..     177     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.081
     DUF2075  5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlr 48
                +V+ ++GtGKt+  l+ + ++     ++++++ +++++l++ l+
  EHU00613.1 42 VVEAGTGTGKTYAYLAPALRA-----KKKVIVSTGSKALQDQLY 80
                79999*******999888887.....666666666666666666 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.5e-05
     DUF2075  78 kkaeekkeepkedvvivDEAhrlltksdqaekqse.enqlkelmk 121
                 k+    +  p++dv+i+DEAh l + ++q++ q+    ql +l k
  EHU00613.1 208 KEGGFGELIPEADVMIFDEAHQLPDIASQYFGQQLsSRQLADLAK 252
                 55555667799**************77776655433667766655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.6e-05     0.047     114     145 ..      23      54 ..      11      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
       T2SSE 114 lkekiaevlrkavrerglilvsGgTgsGKttl 145
                  + ++a+++ +av+++g ++v  gTg+GKt  
  EHU00613.1  23 AQREMAQAVTEAVQNQGELVVEAGTGTGKTYA 54 
                 567899***********************954 PP

>> Methyltransf_17  S-adenosyl-L-methionine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.4e-05     0.098      13      58 ..      23      68 ..      18     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
                     HHHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEE CS
  Methyltransf_17 13 aqrdiLnhvaaevadieGpvlelGLGnGRtydhlrellperriivf 58
                     aqr++ ++v+++v++    v+e G G G+ty +l   l  ++ +++
       EHU00613.1 23 AQREMAQAVTEAVQNQGELVVEAGTGTGKTYAYLAPALRAKKKVIV 68
                     9*************99999***************999987765544 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.19       6      29 ..      32      54 ..      25     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                   HHHHHS-SSEEEEEE-TTSSHHHH CS
  UvrD-helicase  6 reaiaslggpilveAsAGsGKTfv 29
                    ea+++ +g+++veA+ G+GKT+ 
     EHU00613.1 32 TEAVQN-QGELVVEAGTGTGKTYA 54
                   456666.99*************86 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0001      0.18       4      60 ..      22      82 ..      19     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
       DeoRC  4 eeKrrIAkaAaeliedgdtifldaGt....TtlelaraLaekknltvvTnslnvaeeLsek 60
                e+ r++A+a+ e ++++  ++++aGt    T ++la aL++kk++ v T s  + ++L ++
  EHU00613.1 22 EAQREMAQAVTEAVQNQGELVVEAGTgtgkTYAYLAPALRAKKKVIVSTGSKALQDQLYAR 82
                77899******************99976778899***************999988888877 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.28      14      51 ..      27      64 ..      20      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
      DUF938 14 ilevLksylakttervLEiasGtGqHAvffApalpnlk 51
                +++++ +++++++e v+E ++GtG+  +++Apal   k
  EHU00613.1 27 MAQAVTEAVQNQGELVVEAGTGTGKTYAYLAPALRAKK 64
                67788999*************************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4261.09
//
Query:       EHU00614.1  [L=55]
Description: hypothetical protein CKS_2689 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.7   8.5      0.092   13.5   8.5    1.0  1  DUF4282   Domain of unknown function (DUF4282)
       0.82    9.8   3.7        1.1    9.4   2.9    1.6  1  GWT1      GWT1
        2.9    7.5   4.9        3.1    7.4   4.9    1.1  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF4282  Domain of unknown function (DUF4282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.5   1.5e-05     0.092      15      63 ..       4      50 ..       1      53 [. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
     DUF4282 15 vlYilgivlialvllslivgafaalseslsagggllllllaviafllmi 63
                + Y++++++ al+ll++++++f+ +  s +a +g++ l++ + + ++++
  EHU00614.1  4 THYLFWVMFGALTLLFIVIATFVGM--SRTAKHGFFTLVVLMAILVAGA 50
                67***********************..5555555555555555554444 PP

>> GWT1  GWT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.9   0.00018       1.1      82     106 ..       1      25 [.       1      45 [. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00018
        GWT1  82 laNlpYvlwvvalnltllllfllie 106
                 +aN  Y +wv+   ltll++++++ 
  EHU00614.1   1 MANTHYLFWVMFGALTLLFIVIATF 25 
                 89*********99999988877443 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.9   0.00051       3.1       7      48 ..       8      51 ..       3      55 .] 0.53

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00051
     DUF4131  7 lvllalllllllllllllrr..rprrrvllllllllllallgfa 48
                +++++ +l ll++ ++ +    r+ ++ +++l +l++++++g++
  EHU00614.1  8 FWVMFGALTLLFIVIATFVGmsRTAKHGFFTLVVLMAILVAGAL 51
                34444444444444444444556666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 407.71
//
Query:       EHU00615.1  [L=114]
Description: putative reactive intermediate deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-24   86.5   0.1    1.5e-24   86.4   0.1    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP
  ------ inclusion threshold ------
      0.024   15.3   0.1      0.032   14.9   0.1    1.1  1  PMC2NT         PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.1   1.6e-28   1.5e-24       3     120 ..       4     113 ..       2     114 .] 0.95

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 1.6e-28
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--E CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaPa 98 
                    +++++ ++ s+av +++++y++  +p +     l ++d+e+qt++al+ ++a+L+ +g+++s+++++t+Fl+d +dfa++n++++ +++ + +aP+
     EHU00615.1   4 TRVDPEHRMSEAVIHNDTIYYTS-VPEN-----L-DADAEAQTANALAVIDALLTRVGSDKSKILDATIFLVDKADFAAMNRAWDAWVSPD-NAPV 91 
                    567889999************96.9987.....4.9*******************************************************.7*** PP

                    EEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  99 rsaveVaaLpkgakvEIeaiav 120
                    r++v++  +++++kvEI++ia+
     EHU00615.1  92 RCTVQAGLMNPKYKVEIKIIAA 113
                    ********************96 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   3.6e-06     0.032       5      55 ..      11      61 ..      10      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
      PMC2NT  5 raanaLpaeDldfyrsldpefaksldeqserllslinsllklaaskseisa 55
                r + a+ ++D  +y s+ +++ ++ ++q+++ l++i++ll  ++s++++  
  EHU00615.1 11 RMSEAVIHNDTIYYTSVPENLDADAEAQTANALAVIDALLTRVGSDKSKIL 61
                67889999************************************9998743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 892.18
//
Query:       EHU00616.1  [L=60]
Description: uncharacterized UPF0181 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-26   91.1   5.4    2.9e-26   90.9   5.4    1.1  1  UPF0181     Uncharacterised protein family (UPF0181)
  ------ inclusion threshold ------
       0.07   13.3   0.1      0.092   12.9   0.1    1.3  1  PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal


Domain annotation for each model (and alignments):
>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   5.4   3.2e-30   2.9e-26       1      48 [.       1      48 [.       1      50 [. 0.97

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 3.2e-30
     UPF0181  1 MldnllsLtHeqQQqAVEkIqeLmaqGmssgeAIalVAqelReehqak 48
                M+++l++L+H+qQQ+AVE+Iq+Lma+GmssgeAI +VAqe+Re+h+++
  EHU00616.1  1 MMTGLPALSHDQQQRAVERIQQLMAEGMSSGEAITVVAQEIRESHTGE 48
                99*******************************************986 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     1e-05     0.092      34      59 ..      29      59 ..       5      60 .] 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                CCEEEE......EEEETTCCEEEEEEEESSH CS
  PGM_PMM_IV 34 edGrrla.....vRpSGTepllrvyvEaksd 59
                  G  ++     +R S T+ ++r ++E +++
  EHU00616.1 29 SSGEAITvvaqeIRESHTGEMIRARFEEDDE 59
                445555566899***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 555.97
//
Query:       EHU00617.1  [L=452]
Description: aminodeoxychorismate synthase, subunit I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-93  310.4   0.0    1.2e-92  310.1   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme
    8.5e-24   84.4   0.0    1.6e-23   83.5   0.0    1.4  1  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.1   0.0   1.3e-96   1.2e-92       3     258 .]     188     440 ..     186     440 .. 0.99

  Alignments for each domain:
  == domain 1  score: 310.1 bits;  conditional E-value: 1.3e-96
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHSS CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrargk 96 
                      +dYae+++kv+++i+agd+y+v+l++r++a+   + d ++++  l ++n+ap+s++l+l+ds +l+ SPE++l ++++  i+t+pi+GTr+r +
       EHU00617.1 188 DDYAERFNKVQAYIQAGDCYQVNLAQRFSAS--YQGDEWRAFCMLNQANRAPFSAFLRLPDSAILSLSPERFLALDQQ-VITTRPIKGTRPRAA 278
                      79*****************************..999****************************************77.*************** PP

                      SHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHHH CS
  Chorismate_bind  97 tpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkra 190
                      +pe+d+a++++l++ +K+raE+lmivdl+rnd+g+va +gsv+vpelf ve +++v+hlvsti+++l++++++ dll+a+fP+g++tGaPk ra
       EHU00617.1 279 DPEADAAQADSLRTAAKDRAENLMIVDLLRNDIGRVAVAGSVHVPELFVVEPFPAVHHLVSTIQATLPDHLHACDLLRACFPGGSITGAPKIRA 372
                      ********************************************************************************************** PP

                      HHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 191 meiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      m iidelE++rR++++G++gyl++ g+++++++IRt+++++++l++ aG+G+vadSd ++Ey+Etl+K
       EHU00617.1 373 MAIIDELEPHRRNAWCGSIGYLSVCGRMDTSITIRTLIAERQHLYCAAGGGLVADSDMASEYQETLDK 440
                      ******************************************************************98 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   1.8e-27   1.6e-23       8     142 .]      18     151 ..      13     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.8e-27
  Anth_synt_I_N   8 vylklaeeehkflLeSaeneggegrySfigldpflelkskngevevegpegeeleeeepldalrellerfrsaedseptelpfvgGlvGylgYDlv 103
                     + ++a+ ++++lL S++ +++++r+ ++ +dp  +l+++++ +e+++ ++ e+++ +pl++l++  + + ++ ++ + +lpf+gG++G++gYDl 
     EHU00617.1  18 YFSRIAHLPWAMLLSSGQASHSDNRFDILTADPLTTLTTRGSITEIQQGDRVETRTDDPLSLLQQECDALGAK-PPRHPDLPFQGGALGLFGYDLG 112
                    688999999*********99999*************************8888888888*************55.77788***************** PP

  Anth_synt_I_N 104 reieklpksakddlnlpdarlilydtlivfDhkerrlyl 142
                    r +e lp++a  dl + d+   +y+++++ Dh+ ++l+l
     EHU00617.1 113 RRFETLPDTALHDLTTADMAVGIYNWALIADHHLGKLTL 151
                    *********************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3708.04
//
Query:       EHU00618.1  [L=187]
Description: putative NUDIX hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-16   59.4   0.0    5.7e-16   58.8   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   3.2e-20   5.7e-16       2     117 ..      27     142 ..      26     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 3.2e-20
                 EEEEEEEEEEETTSE.EEEEEES..SSSTTT.EESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSG CS
       NUDIX   2 lrravgvvllnekge.vLlvrrs..kkpfpg.WelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevege 95 
                 +++av + +  +++  +Ll++rs   ++++g  ++PgG+ + ++ ++ ++A+RE++EE+G+ ++ +e+lg+l+ +++++g++ ++   +     +++ e
  EHU00618.1  27 RHAAVLIPVVARQQPgLLLTQRShaLRKHAGqVAFPGGMQDHDDsSLVATALREAQEEVGIAPDRVEVLGCLPPVTSSTGFQVTPVVGI----VPATLE 121
                 8999***977777557*******99888888578***************************99*******9999999988877522222....455555 PP

                 CSSTSTTTEEEEEEEEHHHHHH CS
       NUDIX  96 lepndenevsevrwvpleellk 117
                 l++n ++ev+++  +pl+e+l+
  EHU00618.1 122 LRLN-PDEVQSAFEMPLTEALR 142
                 5555.99999999999999933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1349.07
//
Query:       EHU00619.1  [L=454]
Description: L-serine dehydratase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-97  324.6   2.8    6.5e-97  324.3   2.8    1.1  1  SDH_alpha  Serine dehydratase alpha chain
    1.4e-55  188.0   0.1    2.8e-55  186.9   0.1    1.5  1  SDH_beta   Serine dehydratase beta chain


Domain annotation for each model (and alignments):
>> SDH_alpha  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.3   2.8  7.2e-101   6.5e-97       2     260 .]     184     448 ..     183     448 .. 0.93

  Alignments for each domain:
  == domain 1  score: 324.3 bits;  conditional E-value: 7.2e-101
   SDH_alpha   2 kgleilelvteneeeaakrlsaeeidakleeiwevmdeaieeglsnkaiaeegllpgelkvkr.ayaalgkrll.............dklsaaAlavae 86 
                 +gl+++ lv++ne  a+ + s+eei+a++  iw++m+++i++gl+    + eg+lpg l+v r a a+l++ l+             d+++++Alav+e
  EHU00619.1 184 TGLSLSGLVMKNE-LAL-H-SREEINAYFATIWQTMQACIDRGLN----T-EGVLPGPLRVPRrA-ASLRRLLIssakhsndpmvviDWINMFALAVNE 273
                 68999999***99.888.5.59**********************8....6.***********966.8888888444444444445558*********** PP

   SDH_alpha  87 mnaaggrvvtaptsGaaGilPavlvalleelkas......eellraLllaaligilikrnasisgAecGcqaevGvacamAAaglaallggspeqienA 179
                 +naaggrvvtapt+Ga+Gi+Pavl+++ +    +      +  +r++l++++igil+k nasisgAe+Gcq+evGvac+mAAagla+llg+speq++ A
  EHU00619.1 274 ENAAGGRVVTAPTNGACGIVPAVLAYYDH----FiepvtpDIFIRYFLASGAIGILYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPEQVCVA 368
                 **************************888....334569999********************************************************* PP

   SDH_alpha 180 aeialehllGltCDpvaGlvkipCiernalgavkAvtaarlalagdggegivsldevietmrntgkdmsekyketseggLa 260
                 aei++eh+lGltCDpvaG v++pCierna++ vkA++aar+al+ ++ e +vsld+vietm++tgkdm++ky+ets+ggLa
  EHU00619.1 369 AEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTS-EPRVSLDKVIETMYETGKDMNAKYRETSRGGLA 448
                 *********************************************88.*******************************97 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.1   3.1e-59   2.8e-55       1     154 [.       3     155 ..       3     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.9 bits;  conditional E-value: 3.1e-59
                 XXXXXXXXXXXXX-TTTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHHHS-TTSSHHHHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEETT. CS
    SDH_beta   1 SvfdlfkiGiGPSSShTvgpmraaaaFveelkekelleevarirveLyGsLaatgkghgtdeAvllGLegeepetvdpdavesrleeieeekklklag. 98 
                 Svfd+fk+GiGPSSShTvgpm+a+++Fv  l+e+++l+ev+ri+v++yGsL++tgkgh+td A+++GL+ge+p++vd+da+++ +++++++++l+la+ 
  EHU00619.1   3 SVFDMFKVGIGPSSSHTVGPMKAGKQFVVLLSEQGKLHEVTRIAVDVYGSLSLTGKGHHTDIAIIMGLAGESPDSVDIDAIPAFIKDVQQRERLPLAKg 101
                 9************************************************************************************************98 PP

                 TEEEE--HHHHEEEETT---SS-SSEEEEEEE-TTS-EEEEEEEEEETTTEEEETT CS
    SDH_beta  99 ekeiefdeeedivlekkkslplhsnglelsaldeegellleetyySiGGGfiveee 154
                  +e++f  e  +v++++ +l+lh+ngl+l a++++  l+l++tyyS+GGGfiv+ee
  EHU00619.1 102 AHEVDFPREGGMVFRSE-NLSLHENGLRLLAFSGDL-LVLSKTYYSVGGGFIVDEE 155
                 9*************997.9***************97.9***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3370.90
//
Query:       EHU00620.1  [L=520]
Description: hypothetical protein CKS_2683 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-65  218.4   0.0    1.4e-64  217.9   0.0    1.2  1  EAL        EAL domain
    1.5e-25   89.9   0.0    2.6e-25   89.1   0.0    1.3  1  CSS-motif  CSS motif domain associated with EAL
  ------ inclusion threshold ------
       0.22    9.9   0.0       0.33    9.3   0.0    1.2  1  DUF515     Protein of unknown function (DUF515)


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.9   0.0   2.3e-68   1.4e-64       7     238 .]     276     501 ..     271     501 .. 0.96

  Alignments for each domain:
  == domain 1  score: 217.9 bits;  conditional E-value: 2.3e-68
                 HCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CCHHHH CS
         EAL   7 alenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladeeflee 105
                  + ++e+++y QP +++++g++ g+e+llrw++p++g i+p+ f+pl er++l++ l+r+vl+++++ l +l   +++d+++++n+ +++++d+ +le+
  EHU00620.1 276 GITAREFIVYCQPLINARNGQCDGIEILLRWHNPRQGWIPPDVFIPLTERQNLIKPLTRFVLNRVVEALPDLP--HSPDFHIAVNVAASHFRDRAILED 372
                 57889**************************************************************999987..69********************** PP

                 HHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCC CS
         EAL 106 lrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakel 204
                 l+ +   + p p+ Lv+e+te+++   l  + + v+ +L++ G+r+a+ddfgtg+sslsyl++l+pd++Kld+ ++a + +d+ ++++++++i+la++l
  EHU00620.1 373 LQTIWWPANPVPK-LVVELTERDA---LPVVDQTVISQLHEIGVRLAIDDFGTGHSSLSYLKDLQPDVLKLDKIFTASIGTDAINATVTDMVISLAQRL 467
                 *98889999****.********87...77777799999************************************************************* PP

                 T-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 205 gikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 +i +vaegVet+eq++ lr+ g+d +QGy++++p
  EHU00620.1 468 NISLVAEGVETPEQADYLRDRGVDHLQGYYFARP 501
                 *********************************9 PP

>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   4.4e-29   2.6e-25       2     200 ..      43     234 ..      43     238 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 4.4e-29
   CSS-motif   2 qqqldalaeralerledvldqadqaldelqplagrpCseahlaaLrrivafspyvrdiglvkdgrlyCSSlwGeldlplpllppdltsrdgvrlwllrg 100
                 qq++ ++a  a++r +++++ +d a++  + l+g+pC +a    L + +a  + vr+i+lv+d+ lyCSS++G++d +++++ p+  + ++ r++l+++
  EHU00620.1  43 QQRAISFADNAITRFDRMFSPLDVAANNTLGLVGMPCEDAR-FPLIEKIASLQTVRAILLVNDDLLYCSSIFGSRDITFSQTYPE-LALNDKRMILSTD 139
                 79999*********************************999.*******************************************.9999********* PP

   CSS-motif 101 tplvpdrpalvlrrgnyavvispgv..fidgqyl.pelllavsssdgeqlalvvgpaallldgrvlslaeliasearssgalyvrakserypltvvvya 196
                   l ++ p+l+l+ +  ++  s g+   i++ +  ++ll+  s ++++ ++ v g+   ++       ++li+s+ +s++++++  +s ryp+tv++y+
  EHU00620.1 140 DYLLKGSPVLLLWTPTTLDNRS-GIlqAINIELMsSYLLEPQSPWVERAIFNVNGKSLEYG-------NPLIESAVPSEDEVTYNEASLRYPYTVTLYG 230
                 *******************887.999********888888888888888888888776656.......999**************************** PP

   CSS-motif 197 ppas 200
                 p  s
  EHU00620.1 231 PSPS 234
                 9876 PP

>> DUF515  Protein of unknown function (DUF515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   5.5e-05      0.33      27      99 ..      11      95 ..       7     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.5e-05
      DUF515 27 errkrliiGasvlvvivillvfaiYsyienkeleeLENakaakieeinklFas.eyaNdpq...........KlllinKiqaans 99
                 rrkrl+i  ++ ++++ l+    Y++ +++  ++     +++i   +++F   + a +++           ++ li+Ki + + 
  EHU00620.1 11 YRRKRLLIAVVIASIVLTLTLALRYFEEKSRIQQRAISFADNAITRFDRMFSPlDVAANNTlglvgmpcedaRFPLIEKIASLQT 95
                59******5555566666666667999999999998889999*********9775554444477777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3552.06
//
Query:       EHU00621.1  [L=522]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-49  166.7  14.5    6.5e-49  166.1  14.5    1.3  1  TerC       Integral membrane protein TerC family
    1.2e-15   57.2   0.2    4.7e-15   55.4   0.0    2.1  2  CorC_HlyC  Transporter associated domain
    8.7e-06   26.1   1.5      0.014   15.8   0.1    2.8  2  CBS        CBS domain
  ------ inclusion threshold ------
       0.19   12.0   0.1       0.19   12.0   0.1    3.5  3  DUF3382    Domain of unknown function (DUF3382)
          1    9.7   8.4      0.055   13.7   1.0    2.5  3  CclA_1     Putative cyclic bacteriocin


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1  14.5   1.8e-52   6.5e-49       1     180 [.      14     203 ..      14     204 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.1 bits;  conditional E-value: 1.8e-52
        TerC   1 ltlvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlvlRillillavallel...........f...dlilligglfLlytavkellekrlen 85 
                 ltl++leivL+iDNlv+ia+l+ klp++q++ka+l+G+ +Al++R+ l+ l++++++l           f   dlill+gg+fLl++a+ el+e+    
  EHU00621.1  14 LTLIVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLGLLSLISWMVTLtrplfsvggfsFagrDLILLAGGIFLLFKATMELHERL--- 109
                 689***********************************************************99999882556*******************9865... PP

        TerC  86 klvkeekkkkkktkstllavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvklvle 180
                   +++ +++ +++ ++++avv qi+++D vfslD v++av++ ++l++++tav+++++v+ +++k+l+k+++ +pt+ +l+l++ll+ig++lv+e
  EHU00621.1 110 -ENRKLENSGNRSYASFWAVVAQIVILDAVFSLDAVITAVGMVNNLPVMMTAVVIAMIVMLLASKPLTKFVNAHPTVVVLCLSFLLMIGLSLVAE 203
                 .5688999999999******************************************************************************987 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.2     8e+03      10      31 ..     407     428 ..     406     430 .. 0.75
   2 !   55.4   0.0   1.3e-18   4.7e-15       4      80 ..     436     513 ..     434     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.2
                 EETT-BHHHHHHHHTSTTHHCT CS
   CorC_HlyC  10 vdGslpldeleeelglelpeed 31 
                 v+G ++  ++ e++  e+p+ed
  EHU00621.1 407 VQGLITPLDVLEAIAGEFPDED 428
                 6777777788888888999976 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 1.3e-18
                 CTTEEEEETT-BHHHHHHHHTS.T..THHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   4 degsylvdGslpldeleeelgl.e..lpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvekl 80 
                 d++ +lv+G ++l+ l+++l++ e   p++d  +l+Gll+ + g++Pk+g+  ++d+  l f++ e+ + rI+ vrv+++
  EHU00621.1 436 DGDGWLVKGGTDLHSLQQLLDFhElvKPDDDHASLAGLLIAQKGQLPKPGD--VIDIAPLHFQIIEATEYRIDLVRVTRD 513
                 7899******************66544667899******************..66666*******************986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00068       2.4       2      56 ..     303     360 ..     302     361 .. 0.84
   2 !   15.8   0.1     4e-06     0.014       6      56 ..     371     421 ..     364     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00068
                 HHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHHHHH CS
         CBS   2 gdimtr..dvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllrall 56 
                 ++imt+  d+  v+ + ++ e+  ++ ++ +s +PV   e ++++G+v  + ll al 
  EHU00621.1 303 RSIMTPrgDISWVDASRPVDEIRIQLLDTPHSLFPVCrGELDEIIGVVRAKELLVALD 360
                 67888888888999999******99889997555**9877778***********9986 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4e-06
                 BSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHHHHH CS
         CBS   6 trdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllrall 56 
                 ++++++vp++ +   +l  +r+++ +++ +V +e g + G++t  D+l+a++
  EHU00621.1 371 NTPIIVVPETLDPINLLGVLRRAK-GSFVIVtNEFGVVQGLITPLDVLEAIA 421
                 78999*****99999999998766.677444599**555***********97 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5     0.069   2.5e+02       6      25 ..       8      28 ..       5      34 .. 0.86
   2 ?   -2.1   2.0       1.4     5e+03      33      54 ..     149     170 ..     121     181 .. 0.59
   3 ?   12.0   0.1   5.4e-05      0.19       5      76 ..     180     249 ..     176     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.069
     DUF3382  6 AliaallalvlfvpilGl.ql 25
                +++a+ll+l++   +lG+ +l
  EHU00621.1  8 SIWAGLLTLIVLEIVLGIdNL 28
                689**************9555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
     DUF3382  33 vleprwglvaiavavvfvgqLl 54 
                  + +++   ++av++ +++ Ll
  EHU00621.1 149 GMVNNLPVMMTAVVIAMIVMLL 170
                 4444455555566666655555 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 5.4e-05
     DUF3382   5 nAliaallalvlfvpilGlqleldgtrlvleprwglvaiavavvfvgqLlrplllqalkarkklkkveskad 76 
                 nA  + +++ + f++++Gl l+ +g  +++ +  g + +a++   +  L+ +  ++++ + ++ +++ ++++
  EHU00621.1 180 NAHPTVVVLCLSFLLMIGLSLVAEGFGFHIPK--GYLYAAIGFSILIELFNQIARRNFLRHQSHRPMRERTA 249
                 666666777777999*****************..99999999999999999999998888766665555444 PP

>> CclA_1  Putative cyclic bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.32   1.2e+03      85     103 .]      49      67 ..      14      67 .. 0.76
   2 ?   13.7   1.0   1.5e-05     0.055      44     101 ..     121     179 ..      93     181 .. 0.89
   3 ?   -3.8   0.2       4.5   1.6e+04      10      26 ..     193     209 ..     185     220 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.32
      CclA_1  85 rglivtlvkrwgmkklvsw 103
                  gl ++l+ r g+  l+sw
  EHU00621.1  49 IGLSLALIMRLGLLSLISW 67 
                 4889999999999999999 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.5e-05
      CclA_1  44 tyaslynvvsaivngasimnavavvtav.iagplaaaltavgrglivtlvkrwgmkklv 101
                 +yas++ vv+ iv   +++   av+tav +   l   +tav   +iv l+    + k+v
  EHU00621.1 121 SYASFWAVVAQIVILDAVFSLDAVITAVgMVNNLPVMMTAVVIAMIVMLLASKPLTKFV 179
                 7**************************967889***************99887777766 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.5
      CclA_1  10 lflwgaaligvcfafmv 26 
                 l++ g +l+   f f +
  EHU00621.1 193 LLMIGLSLVAEGFGFHI 209
                 23334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3801.33
//
Query:       EHU00622.1  [L=323]
Description: PTS system mannose-specific IIAB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-55  185.2   2.0    1.1e-54  184.7   2.0    1.2  1  PTSIIB_sorb    PTS system sorbose subfamily IIB component
    1.6e-34  118.6   0.0    3.4e-34  117.6   0.0    1.6  1  EIIA-man       PTS system fructose IIA component
  ------ inclusion threshold ------
      0.033   14.2   0.0      0.084   12.9   0.0    1.7  1  SL4P           Uncharacterized Strongylid L4 protein
      0.084   13.0   0.0        8.6    6.5   0.0    2.4  2  Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix do
        3.7    7.7   5.0         21    5.2   0.1    2.4  2  Strep_SA_rep   Streptococcal surface antigen repeat


Domain annotation for each model (and alignments):
>> PTSIIB_sorb  PTS system sorbose subfamily IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   2.0   3.1e-58   1.1e-54       1     147 [.     164     310 ..     164     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 3.1e-58
                  EEEEEEETTGCGTTHHHHHHCCCTTSEEEEE-HHHHC-HHHHHHHHCCS-TTSEEEEE-HHHHHHHHHCB-.TTEEEEEEESSHHHHHHHHHTT---S CS
  PTSIIB_sorb   1 iklvRiDdRLiHGqVataWtkelkanriivvdDevakdelqkellkmaapsgvkvsilsvekaievlkkakvekekvlllvknpedalklveggvkik 98 
                  i l+RiDdRLiHGqVat+Wtke++++riivv+Deva+d+++k+ll+++ap+gv+++++ v+k+++v++++k+ +e+v+ll++np+d+l++ve+gv+ik
   EHU00622.1 164 ICLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVANDNVRKTLLTQVAPPGVTAHVVGVDKMVRVWNNPKYARERVMLLFTNPTDVLRVVEQGVDIK 261
                  679*********************************************************************************************** PP

                  EEEEEEB---TTSEESSSSBEE-HHHHHHHHHHHHC--EEEE-SSTTS- CS
  PTSIIB_sorb  99 evnvGnmakkegkkqvsksvslteeeiealkelaekgveveiqkvpsdk 147
                  +vn+G+ma+++gk+qv+++vs++e++i+a+++l+e+++e+e++kv  d+
   EHU00622.1 262 SVNIGGMAFRQGKTQVNNAVSVDEKDIAAFQKLNERNIELEVRKVSGDP 310
                  *********************************************9876 PP

>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   9.4e-38   3.4e-34       2     114 ..       5     117 ..       4     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 9.4e-38
                 EEEEESBCHHHHHHHHHHCCHSSS-SCEEEEEC-TTS-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC--CHHHHHHH CS
    EIIA-man   2 ivivsHgelAeglaelleelagedqekviavggtpdesigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitgvnlPlveeav 100
                 ++i +Hg++Ae+l++++e+l+ge qe+v++++++p+e+++tl ek++++++e+d++++vl+LvD +g++pfn+a++++ ++ ++ev++gvn+P+++e++
  EHU00622.1   5 LIIGTHGWAAEQLLKTAEMLLGE-QENVKWIDFVPGENAETLIEKYQAKLAELDTSKGVLFLVDTWGGSPFNAASRLVMDHASYEVVAGVNIPMLVETL 102
                 89*********************.9************************************************************************** PP

                 HHH.CHHHCCHHHHH CS
    EIIA-man 101 aar.asaslgelvek 114
                 +ar ++++++elv+ 
  EHU00622.1 103 MARdDNPTFDELVAI 117
                 ***99******9985 PP

>> SL4P  Uncharacterized Strongylid L4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05     0.084      24      56 ..      40      73 ..      28      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
        SL4P 24 kDkddLfekfkkklkelgipldevywvd.edgdr 56
                ++ + L+ek++ kl+el+ + + ++ vd ++g +
  EHU00622.1 40 ENAETLIEKYQAKLAELDTSKGVLFLVDtWGGSP 73
                68899***********************888765 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.015        52      36      63 ..      35      62 ..      30      64 .. 0.93
   2 ?    6.5   0.0    0.0024       8.6      29      51 ..      99     122 ..      77     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.015
                   SS--HHHHHHHHHHH---HHHHHC-SS- CS
  Phage_CI_repr 36 dffPgdvvvtcaletdtsLewLatGkgq 63
                   df+Pg+   t+ ++ +++L++L t+kg 
     EHU00622.1 35 DFVPGENAETLIEKYQAKLAELDTSKGV 62
                   9*************************96 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0024
                    HHHHHHSSS--.HHHHHHHHHHH- CS
  Phage_CI_repr  29 vstwvrRdffP.gdvvvtcaletd 51 
                    v t++ Rd +P  d +v++a+et+
     EHU00622.1  99 VETLMARDDNPtFDELVAIAVETG 122
                    56999******99*********98 PP

>> Strep_SA_rep  Streptococcal surface antigen repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.2     0.019        68       1       8 [.      47      54 ..      47      55 .. 0.85
   2 ?    5.2   0.1     0.006        21      11      22 ..     285     296 ..     285     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.019
                  XXXXXHHH CS
  Strep_SA_rep  1 AeYeaKLa 8 
                  ++Y+aKLa
    EHU00622.1 47 EKYQAKLA 54
                  58999998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.006
                   HHHHHHHHHHHH CS
  Strep_SA_rep  11 eaeLAaVQKana 22 
                   e+++Aa QK n+
    EHU00622.1 285 EKDIAAFQKLNE 296
                   89*******886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2475.45
//
Query:       EHU00623.1  [L=266]
Description: mannose-specific enzyme IIC component of PTS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-76  256.3  40.2    2.5e-76  256.1  40.2    1.0  1  EII-Sor          PTS system sorbose-specific iic component


Domain annotation for each model (and alignments):
>> EII-Sor  PTS system sorbose-specific iic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1  40.2   1.4e-80   2.5e-76       2     233 .]       6     237 ..       5     237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 256.1 bits;  conditional E-value: 1.4e-80
     EII-Sor   2 iqailiglvaflagldsllgeltlerPlvagllvGlilGdlqtGlivGatlqlvylGvvtiGgavppdaalagiigtalailsgasaeaavalavpval 100
                 +q+ili+++a++ag+ s+l+e++++rPlva++l+G+ilGd++tG+i+G+tl++++lG+++iG+av+pdaala+ii+t+l+i+ g+s+ a++ala+p+a+
  EHU00623.1   6 LQIILIFIIACIAGMGSILDEFQFHRPLVACTLIGIILGDMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGGQSVGAGIALAIPLAA 104
                 8************************************************************************************************** PP

     EII-Sor 101 lgqllttlvrtinsvfvhkadkaaekgnlkkierlhlllplllglllrfipvflalyfgaeavqallnaipewllkgLsvaGglLpavGfAmllkvmlk 199
                 +gq+lt++vrt++++f+h adkaaekgnl +i+++h+ ++ll+++++++++ ++a+ +g++av++ll++ipe++++gL++aGg++++vG+Am++++m  
  EHU00623.1 105 AGQVLTIIVRTLTVAFQHAADKAAEKGNLTAISWIHVSALLLQAMRIAIPALIVAISVGTDAVHSLLSSIPEVVTNGLNIAGGMIVVVGYAMVINMMRA 203
                 *************************************************************************************************** PP

     EII-Sor 200 kkllpffllGFvlaaylklnliavaiigvaiAli 233
                   l+pff lGFv aa++++nl+a+++igv++A++
  EHU00623.1 204 GYLMPFFYLGFVTAAFTSFNLVALGVIGVVMAVL 237
                 ********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1899.68
//
Query:       EHU00624.1  [L=281]
Description: mannose-specific enzyme IID component of PTS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.5e-110  366.5   1.1   7.4e-110  366.3   1.1    1.0  1  EIID-AGA  PTS system mannose/fructose/sorbose family IID comp


Domain annotation for each model (and alignments):
>> EIID-AGA  PTS system mannose/fructose/sorbose family IID component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.3   1.1  4.1e-114  7.4e-110       1     265 []      10     279 ..      10     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 366.3 bits;  conditional E-value: 4.1e-114
    EIID-AGA   1 kltkkdlnkvflrslflqasfnyermqalgflysmlpalkklYkkdkedlkealkrhleffNtepqlatfilGitlalEeekang.eideeainavKvg 98 
                 klt  d++ vf+rs ++q+s+n+ermqalgf++sm+p++++lY+++++d+k+a+krhleffNt+p++a+++lG+t+a+Ee++ang +id+ ain++Kvg
  EHU00624.1  10 KLTPGDVRAVFVRSNLFQGSWNFERMQALGFCFSMVPVIRRLYPENNDDRKQAIKRHLEFFNTHPYVAAPVLGVTMAMEEQRANGaAIDDGAINGIKVG 108
                 688899*************************************99****************************************55************ PP

    EIID-AGA  99 lmGPlAGiGDslfwgtlrpilaaiaaslAlqgnilGpilflvvfnvvrlalryyllelGYklGtkaieklsesgllqkltkaasilGlfvvGaliaswv 197
                 lmGPlAG+GD++fwgt+rp++aa++a++A++g++lGp+lf+++fn++rl++ryy++ +GY++G ++++++  +g lqklt++asilGlfv+Gal+++w+
  EHU00624.1 109 LMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLARLLTRYYGVAYGYRKGIDIVSDMG-GGFLQKLTEGASILGLFVMGALVNKWT 206
                 **********************************************************************9.779************************ PP

    EIID-AGA 198 kistplki......ssgettvslqdildkilpgllpllltllvywllkkkkvspikiilllvvigivgsllgil 265
                 ++++pl++      + ++t++++q+ild+++pg++plllt+ ++wll++k v++++ii+++++igi g+++g+l
  EHU00624.1 207 HVNIPLVVsritdqTGKTTVTTVQSILDQLMPGIVPLLLTFACMWLLRRK-VNALWIIVGFFAIGIFGYWIGLL 279
                 ******995555532333489*****************************.*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2241.59
//
Query:       EHU00625.1  [L=152]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-59  199.2   0.9    3.8e-59  199.0   0.9    1.0  1  DUF986           Protein of unknown function (DUF986)
  ------ inclusion threshold ------
      0.023   14.7   3.6      0.023   14.7   3.6    1.8  2  Na_Ca_ex         Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> DUF986  Protein of unknown function (DUF986)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.9   4.2e-63   3.8e-59       1     147 [.       4     150 ..       4     151 .. 0.99

  Alignments for each domain:
  == domain 1  score: 199.0 bits;  conditional E-value: 4.2e-63
      DUF986   1 tdiilillivllllyaiydefildklkgktkLkvkLkrrkkidalilivliviliyqnvteegesltlyLLavlillaiYlafiRspklllKeeGffya 99 
                 tdii++l+i++ll++aiyde+il+++kg t L+v+L+rr+k+d+li+i+l+vil+++nvt++g  lt++LL++l++l+++l+++R p l++K+eG+f+a
  EHU00625.1   4 TDIIIALCIAALLVFAIYDEAILPRRKGPTLLRVPLQRRHKADSLIFIGLLVILLWNNVTHQGPVLTTTLLMMLCFLSFWLFWLRRPTLVMKREGLFFA 102
                 79************************************************************************************************* PP

      DUF986 100 nifieYkkikainlsedgilvidlekrrllikvkklddlekivkflve 147
                  i+i Y++i+++nlsedgilvi+le+rrlli+v++lddle++++ lve
  EHU00625.1 103 GIWIAYSRIQSMNLSEDGILVIQLEQRRLLIAVHQLDDLERVYQTLVE 150
                 *********************************************987 PP

>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.13   1.2e+03     111     143 ..       9      19 ..       2      35 .. 0.57
   2 ?   14.7   3.6   2.6e-06     0.023      79     149 ..      47     112 ..      44     114 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.13
                 HHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHH CS
    Na_Ca_ex 111 llllllvlllllplfvpgrltvleglvllllYa 143
                 +l+++++l+                      +a
  EHU00625.1   9 ALCIAALLV----------------------FA 19 
                 222222222......................22 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.6e-06
                 HHTHHHHHHHHHHBTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  79 lllviGlialigslkvdseslkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                  l+ iGl +++ +  v ++     l  +ll++l++l+  ++l+  l+ p+ +++ egl +++++++y  ++
  EHU00625.1  47 SLIFIGLLVILLWNNVTHQG--PVLTTTLLMMLCFLS--FWLF-WLRRPTLVMKREGLFFAGIWIAYSRIQ 112
                 68999**9999773333322..222333344444433..2222.334589****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1279.32
//
Query:       EHU00626.1  [L=269]
Description: 23S rRNA m1G745 methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.5   0.0    3.3e-13   49.7   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
      2e-13   50.9   0.0    4.7e-13   49.7   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    2.9e-13   50.3   0.1      2e-12   47.6   0.1    2.3  2  Methyltransf_11  Methyltransferase domain
    1.2e-07   31.4   0.0    2.1e-07   30.6   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.7e-05   22.8   0.0     0.0013   18.6   0.0    2.1  1  Methyltransf_23  Methyltransferase domain
    9.1e-05   22.1   0.0    0.00017   21.2   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00013   20.7   0.0     0.0002   20.1   0.0    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
     0.0012   18.9   0.0     0.0019   18.2   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
     0.0025   18.5   0.0     0.0085   16.8   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
     0.0036   17.1   0.0     0.0099   15.6   0.0    1.7  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.046   13.8   0.0       0.11   12.6   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
      0.059   12.8   0.0      0.092   12.1   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.2e-16   3.3e-13       5     128 ..      87     198 ..      84     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 2.2e-16
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       ++lD GCG+G++t +la++  p ++v+G+D  + ai+lA ++     +  v F++++ + l+  ++d + D ++       +++p++   e+ 
       EHU00626.1  87 AQILDTGCGEGYYTGALADNFAPAGKVFGLDVAKMAIRLAAKR-----YPQVLFCVASSQRLP--FADHSLDAVVR------IYAPCNEA-ELN 166
                      69****************************************8.....889************..*********99......55555544.558 PP

  Methyltransf_31  99 rvlkpggilliedpr..llaelpakveeeska 128
                      rv+kpgg+ll+ +p   +la+++a ++++ ++
       EHU00626.1 167 RVIKPGGYLLTVTPGphHLAQFKALIYRDVQL 198
                      9*********9999987888888777776664 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   3.2e-16   4.7e-13       1      97 []      89     173 ..      89     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.2e-16
                      EEEET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +Ld GcG+G +t ala+++ +++kv g+D+++ +++ a++r+    ++v f +++ ++lpf+d+s D+vv ++a    + ++     +e+ rv+
       EHU00626.1  89 ILDTGCGEGYYTGALADNFaPAGKVFGLDVAKMAIRLAAKRY----PQVLFCVASSQRLPFADHSLDAVVRIYA----PCNE-----AELNRVI 169
                      8******************779********************....9************************855....3333.....6788888 PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       EHU00626.1 170 KPGG 173
                      8888 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.2   6.2e+03      45      64 ..      59      77 ..      37      81 .. 0.73
   2 !   47.6   0.1   1.3e-15     2e-12       1      95 [.      90     176 ..      90     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.2
                     EEETTEECCCTSS-TT-EEE CS
  Methyltransf_11 45 vefvvadaeklpfednsfDl 64
                      +f++a   + p++d+ +D+
       EHU00626.1 59 RDFLQAGYYQ-PLRDKVVDV 77
                     3567777777.999999997 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 1.3e-15
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld GcG G+++ ala+++   ++v+g+D++k +++la +++++      f va+ ++lpf+d+s D+vv   + ++        +e+ Rv kpg
       EHU00626.1  90 LDTGCGEGYYTGALADNFapaGKVFGLDVAKMAIRLAAKRYPQVL----FCVASSQRLPFADHSLDAVVRIYAPCNE-------AELNRVIKPG 172
                      89*************888899****************99999865....79*********************99999.......69******** PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+l+
       EHU00626.1 173 GYLL 176
                      **96 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.4e-10   2.1e-07      35     152 ..      70     178 ..      53     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.4e-10
                      HHHHHHHH--S-...-TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES- CS
  Ubie_methyltran  35 Wkkfveklvavk...rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfG 125
                       +++v ++ +++   ++a++lD  +G g ++ +l+d+    gkv +lD+ ++ ++ + k+     + ++ f +a++++Lpf d s D v   + 
       EHU00626.1  70 LRDKVVDVLNQHlqvPAAQILDTGCGEGYYTGALADNFAPAGKVFGLDVAKMAIRLAAKR-----YPQVLFCVASSQRLPFADHSLDAVVRIYA 158
                      5666666665541115679********************************999888877.....6799*******************976665 PP

                      GGG-S-HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 126 lrnvtDklkaLkeayrvlkpGGrlvvl 152
                        n         e+ rv+kpGG l+ +
       EHU00626.1 159 PCNE-------AELNRVIKPGGYLLTV 178
                      5554.......3678999999998765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   8.5e-07    0.0013       9     124 ..      70     184 ..      55     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.5e-07
  Methyltransf_23   9 lsdklerllpk..lraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg......kfdlIvlrev 91 
                      l+dk+  +l    + + + +Ld GcG+G+ +  l++n++   +v g D   +a+ +a+k++ ++   f   + a +q+      + d +v ++ 
       EHU00626.1  70 LRDKVVDVLNQhlQVPAAQILDTGCGEGYYTGALADNFApagKVFGLDVAKMAIRLAAKRYPQV--LF---CVASSQRlpfadhSLDAVVRIYA 158
                      5566655553333456679******************98899**************95444444..44...44555552222224444444444 PP

  Methyltransf_23  92 lehvpdppellrqiatllkpgGylllseplasl 124
                       ++        + +++ +kpgGyll  +p+  +
       EHU00626.1 159 PCNE-------AELNRVIKPGGYLLTVTPGPHH 184
                      4433.......3577778888888888887654 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   0.00017      17      75 ..      72     130 ..      65     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                 -HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHH.HHTTC.EEEEEESBHHHHHHHHHHH CS
         MTS  17 DkGsklLletlpkelsgkvlDlGcGaGvlgaala.kespeaevtlvdvdarAlesakenl 75 
                 Dk  ++L ++l+   + ++lD GcG G+ + ala ++ p  +v  +dv ++A+++a + +
  EHU00626.1  72 DKVVDVLNQHLQV-PAAQILDTGCGEGYYTGALAdNFAPAGKVFGLDVAKMAIRLAAKRY 130
                 6667899999999.6778*********976666516788889************998765 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.3e-07    0.0002     114     219 ..      82     179 ..      52     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.3e-07
  Methyltransf_29 114 aggkvrtvlDvGCgvasfgayllsrdvltlslapkDeheaqvqfaLeRgvpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdR 207
                       +    ++lD+GCg   ++++l ++   +  +   D+ +  + +a  R    +  v +++rlp+  +s d +     ri    ++     e++R
       EHU00626.1  82 LQVPAAQILDTGCGEGYYTGALADNFAPAGKVFGLDVAKMAIRLAAKRYPQVLFCVASSQRLPFADHSLDAV----VRIYAPCNE----AELNR 167
                      34455789*****************************************99999****************76....344444444....59*** PP

  Methyltransf_29 208 vlRpgGyfvlsa 219
                      v++pgGy++  +
       EHU00626.1 168 VIKPGGYLLTVT 179
                      *******97654 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06    0.0019      23      71 ..      83     130 ..      71     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
  Methyltransf_32  23 esgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekra 71 
                      + +a +++D G+G+gY + +la+ +     kv+g+d+ +  ++ a kr 
       EHU00626.1  83 QVPAAQILDTGCGEGYYTGALAD-NFAPAGKVFGLDVAKMAIRLAAKRY 130
                      567899*****************.66789********999888777765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.7e-06    0.0085       1      43 [.      90     133 ..      90     161 .. 0.82
   2 ?   -2.0   0.0       4.3   6.4e+03      89      99 .]     165     175 ..     162     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.7e-06
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakr 43 
                      L+ GcG G ++ al++++ p  ++ g+D+ + ai  a+++  + 
       EHU00626.1  90 LDTGCGEGYYTGALADNFaPAGKVFGLDVAKMAIRLAAKRYPQV 133
                      899***************99999***********8888887765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.3
  Methyltransf_12  89 irklLkpgGrl 99 
                      + +++kpgG+l
       EHU00626.1 165 LNRVIKPGGYL 175
                      7899*****87 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3   4.4e+03     160     177 ..      27      44 ..      24      48 .. 0.81
   2 !   15.6   0.0   6.7e-06    0.0099      72     115 ..      84     127 ..      68     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3
                 HHTEEEEEEEEEEESBSS CS
        PCMT 160 idQLkeGGrlvvPvgeee 177
                 +dQ keG   ++Pv++++
  EHU00626.1  27 FDQAKEGYVNLLPVQHKG 44 
                 799999999999999754 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6.7e-06
                 -TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHH CS
        PCMT  72 kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeak 115
                  + a++L+ G+G Gy t  la  + + g+v +++  k  ++ a 
  EHU00626.1  84 VPAAQILDTGCGEGYYTGALADNFAPAGKVFGLDVAKMAIRLAA 127
                 4789****************************998877666555 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.2e-05      0.11      21      60 ..      85     124 ..      71     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.2e-05
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl 60 
                 p  +++D g++ G ++  l+ ++ ++gkv+++D+ +ma +
  EHU00626.1  85 PAAQILDTGCGEGYYTGALADNFAPAGKVFGLDVAKMAIR 124
                 67889******************989***********533 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.1e-05     0.092     154     202 ..      77     128 ..      73     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-05
        PrmA 154 aleklvk.egeevlDvGtGSGiL..aiaaakLgakkvvavDiDevAvkvake 202
                 +l+++++ + +++lD G+G G    a+a     a kv+++D+ ++A++ a++
  EHU00626.1  77 VLNQHLQvPAAQILDTGCGEGYYtgALADNFAPAGKVFGLDVAKMAIRLAAK 128
                 566665514569*********864478888999***************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2258.94
//
Query:       EHU00627.1  [L=69]
Description: stress protein, member of the CspA-family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-33  113.5   1.6    3.2e-33  113.4   1.6    1.0  1  CSD       'Cold-shock' DNA-binding domain
     0.0012   18.5   0.4     0.0015   18.1   0.4    1.4  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   1.6   3.6e-37   3.2e-33       2      65 ..       5      68 ..       4      69 .] 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 3.6e-37
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +G+Vkwfn++kgfGFIt++dg+kdvFvH+saiqg+gf++L+egq+VeFe+++g+kgp A+nVt 
  EHU00627.1  5 KGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTA 68
                7*************************************************************96 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   1.7e-07    0.0015       7      29 ..      14      36 ..      12      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-07
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF+ p +g++D+f++ + +
  EHU00627.1 14 SKGFGFITPADGSKDVFVHFSAI 36
                79****************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 604.17
//
Query:       EHU00628.1  [L=334]
Description: hypothetical protein CKS_2675 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-38  131.9   0.1    3.1e-38  131.3   0.1    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain
    3.1e-16   59.7   0.0    3.9e-16   59.4   0.0    1.1  1  Lactamase_B_3  Beta-lactamase superfamily domain
     0.0021   18.1   0.7      0.016   15.2   0.4    2.5  3  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.1   5.2e-42   3.1e-38       1     199 [.      88     284 ..      88     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 5.2e-42
                    SEEEES--TT.......HHHHHTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCC..C--EEEEEE.EEHHHHHHCCTTCGHHHCHTTTTE CS
  Lactamase_B_2   1 rriLiDagpd.......lrqqalralqPve.lrdelppidaVllthaHyDHlaglltlre..lrpkklply.apkgvlavleanfvylaleeepav 85 
                    + iLiD+ ++       + ++ +r+  P + + d+lp++d Vl++h+HyDHl + +t+++  +r  +  ++ +p+g+++  ++++v      +   
     EHU00628.1  88 HYILIDPALSrrasplpFIGP-ERKT-PSPlAIDQLPRLDYVLISHNHYDHL-DKPTIKQivRRFPDT-IFlVPLGLAEWCKRHGV------K--- 170
                    67********77777777777.6665.88889********************.99*****75444443.555*******9999964......4... PP

                    EEEEE-TTSEEEECSTTEEEEEEEE-EE--C.TCCE-TTTSEEEEEECTTEEEEEESS-S---..HHHHHHHCT-SEEEEE-S-SSTTHHHHHHT- CS
  Lactamase_B_2  86 nvheldwgesfelgdggleitatparhksgr.rldrnagdtlGlriegggkrvyyigDtgyip..eeigerlggadllllditayeddemirhmgH 178
                    +vheldw+++  ++  g+++ a+parh+s r   +rn+++++G++i+++  r++++gD+gy +   +i++++g+++l+ l+i+ay +++++ +  H
     EHU00628.1 171 QVHELDWWQQKVFA--GIQFDAVPARHWSMRtVTNRNRTLWCGWVIRTASLRFWFSGDSGYSDslLAIAQHYGPFNLAALPIGAYAPRWFM-GAQH 263
                    799**********9..899************9999****************************666699**********************.9*** PP

                    --STSHHHHCTTSSSSEEEEE CS
  Lactamase_B_2 179 ltpeeaveaaadlgakrlvli 199
                    ++p++av++ +++g   +++i
     EHU00628.1 264 MDPQQAVALWRAIGQPLTLPI 284
                    ***************999998 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   6.4e-20   3.9e-16       2     162 ..      73     284 ..      72     285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 6.4e-20
  Lactamase_B_3   2 ltwlghnsflletagarilvDPf........kanlgyeppa................eeaDlvlisqaledHahletlkql............... 58 
                    l wlgh+++l++++   il+DP                                   ++ D vlis+++ dH + +t+kq+               
     EHU00628.1  73 LWWLGHAALLMRINQHYILIDPAlsrrasplP--------FigperktpsplaidqlPRLDYVLISHNHYDHLDKPTIKQIvrrfpdtiflvplgl 160
                    77*********************555444440........24445666677778888*************************************** PP

  Lactamase_B_3  59 ........aenvkvleegeslevggleiravatshdav...ggsergenngflleqdgltiyhlGhlahelsseel.kelgrvDvvltPvgg.... 138
                             ++v+ l+ +++  ++g+++ av++ h++      ++r   +g++++ + l++ + G+ ++  s   + +  g+ ++  +P+g     
     EHU00628.1 161 aewckrhgVKQVHELDWWQQKVFAGIQFDAVPARHWSMrtvTNRNRTLWCGWVIRTASLRFWFSGDSGYSDSLLAIaQHYGPFNLAALPIGAyapr 256
                    *****999999999999******************76621134455559********************887777635568999999999999998 PP

  Lactamase_B_3 139 ....pltlgqeealelakrLkpklvlPm 162
                           +++++a+ l +++   l lP+
     EHU00628.1 257 wfmgAQHMDPQQAVALWRAIGQPLTLPI 284
                    8887678888888888888877777776 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   2.6e-06     0.016       5      57 ..      77     136 ..      73     138 .. 0.80
   2 ?   -2.6   0.0      0.79   4.7e+03      60      78 ..     159     177 ..     158     182 .. 0.86
   3 ?   -1.4   0.0      0.32   1.9e+03     136     160 ..     212     236 ..     210     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-06
                  SSEEEEEEETTCEEEES--SCHHHHHHHH.......HHHHHTSGGGGEEEEE-SBSSHHH CS
  Lactamase_B   5 pvnsyliegdggviLiDtGtsteaaraal.......elaalglkpkdvdavilTHlHlDH 57 
                  ++ + l++ + + iLiD+ +s +a+ +            ++  ++ ++d+v+++H H+DH
   EHU00628.1  77 GHAALLMRINQHYILIDPALSRRASPLPFigperktPSPLAIDQLPRLDYVLISHNHYDH 136
                  56678899999999999999999999888999999544444455667************* PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.79
                  TGGGCTTHHCCEETCCEHH CS
  Lactamase_B  60 glgglveatdvpvgavaee 78 
                  gl++++++++v+++++ ++
   EHU00628.1 159 GLAEWCKRHGVKQVHELDW 177
                  8999********9998776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.32
                  EEEEETTCCEEEECTTTSSHHCCCC CS
  Lactamase_B 136 gvveygggkvlftGDallagetgri 160
                   v++  + ++ f+GD +++ + + i
   EHU00628.1 212 WVIRTASLRFWFSGDSGYSDSLLAI 236
                  5777888888999999998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 3039.09
//
Query:       EHU00629.1  [L=90]
Description: hypothetical protein CKS_2674 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-28   97.7   0.1    3.6e-28   97.5   0.1    1.1  1  YebO      YebO-like protein
  ------ inclusion threshold ------
      0.015   15.5   0.1      0.019   15.1   0.1    1.1  1  HemY_N    HemY protein N-terminus
      0.046   13.5   0.7      0.063   13.1   0.7    1.2  1  DivIC     Septum formation initiator
      0.049   13.4   0.3      0.075   12.8   0.3    1.5  1  Vpu       Vpu protein


Domain annotation for each model (and alignments):
>> YebO  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.1     8e-32   3.6e-28       2      80 .]      16      90 .]      15      90 .] 0.89

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 8e-32
        YebO  2 vlvivvlvgllvwFFvnRasvrAneqieLleelleqqkrQnaLLrrLaeakkeqsedveeksdaveesdedfkrlipEr 80
                v ++ ++v+l++wF+vnRasvrAneq++Ll++lle+qk+QnaLLrr++ea++++ e+ +e      ++++ ++rlipEr
  EHU00629.1 16 VFLLALIVALMLWFYVNRASVRANEQVALLTSLLEEQKKQNALLRRMIEAQNGADEPSPEAP----SENDGLIRLIPER 90
                778999**********************************************9777744443....35568*******9 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   4.3e-06     0.019      20      73 ..      15      68 ..      10      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.3e-06
      HemY_N 20 vlllvllfvllylllrllrlllrlparvrrwrrrrrerkarealseGlialaeG 73
                 ++l++l+v+l+l + + r+ +r+ ++v+   +   e+k+++al++ +i+ ++G
  EHU00629.1 15 GVFLLALIVALMLWFYVNRASVRANEQVALLTSLLEEQKKQNALLRRMIEAQNG 68
                68999*******************************************999888 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   1.4e-05     0.063       3      49 ..      19      65 ..      17      71 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
                XXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC  3 llfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkd 49
                l+++++l++  +  +a  + ++++a l+  l+++k++n+ L + ++ 
  EHU00629.1 19 LALIVALMLWFYVNRASVRANEQVALLTSLLEEQKKQNALLRRMIEA 65
                5555555555566678899********************99988875 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.7e-05     0.075       7      57 ..      12      73 ..       1      89 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
         Vpu  7 iglialivaliiaivvWtivyreykkikkq...........keierlikrireraedSgnES 57
                i+ +++++ali+a ++W +v r   +  +q           k+ + l++r++e ++  ++ S
  EHU00629.1 12 ISYGVFLLALIVALMLWFYVNRASVRANEQvalltslleeqKKQNALLRRMIEAQNGADEPS 73
                56678999***********9999999999988888888888888999999999887666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      848  (0.0472977); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 669.27
//
Query:       EHU00630.1  [L=79]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-37  128.0   0.9    1.1e-37  127.9   0.9    1.0  1  YobH      YobH-like protein


Domain annotation for each model (and alignments):
>> YobH  YobH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   0.9   6.3e-42   1.1e-37       1      70 []       2      71 ..       2      71 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 6.3e-42
        YobH  1 rllirivillaviwvalLlsGyGvligskenaaGlGLqCqyltargvvtaqylhtdsGviGvtdCPllkk 70
                +l+ir++i++ ++w+a+L++GyGvl gs++na GlGL+C+yltarg+vtaqylhtdsGv+GvtdCPllkk
  EHU00630.1  2 KLFIRAIIVIGILWLAMLFTGYGVLAGSNKNAEGLGLKCNYLTARGMVTAQYLHTDSGVVGVTDCPLLKK 71
                689******************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 658.44
//
Query:       EHU00631.1  [L=264]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-39  134.7   0.3    5.1e-38  129.8   0.0    2.4  2  IclR            Bacterial transcriptional regulator
    2.8e-15   55.8   0.3    7.7e-15   54.4   0.0    1.9  2  HTH_IclR        IclR helix-turn-helix domain
    6.6e-06   25.9   0.0    1.3e-05   24.9   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
      1e-05   25.3   0.0    3.8e-05   23.5   0.0    1.9  2  HTH_11          HTH domain
    3.5e-05   23.3   0.0    8.1e-05   22.1   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00011   22.1   0.0    0.00023   21.0   0.0    1.5  1  MarR            MarR family
     0.0002   21.2   0.0    0.00055   19.8   0.0    1.8  1  MarR_2          MarR family
    0.00026   20.8   0.4     0.0013   18.5   0.0    2.2  2  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0013   18.8   0.2     0.0043   17.1   0.0    2.0  2  HTH_20          Helix-turn-helix domain
      0.002   18.7   0.4     0.0058   17.2   0.1    1.9  1  Mga             Mga helix-turn-helix domain
     0.0021   18.0   0.0     0.0044   17.0   0.0    1.5  1  HTH_6           Helix-turn-helix domain, rpiR family
     0.0055   16.9   0.1      0.014   15.5   0.1    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0065   16.4   0.0      0.013   15.4   0.0    1.6  1  HTH_45          Winged helix-turn-helix
  ------ inclusion threshold ------
      0.013   15.6   0.0       0.13   12.4   0.0    2.4  2  HTH_22          HTH domain
      0.013   15.5   0.0       0.03   14.3   0.0    1.6  1  HTH_29          Winged helix-turn helix
       0.02   15.4   0.0      0.051   14.1   0.0    1.7  1  HTH_27          Winged helix DNA-binding domain
       0.02   15.0   0.0      0.034   14.3   0.0    1.5  1  FUR             Ferric uptake regulator family
       0.02   14.8   0.2      0.066   13.2   0.1    1.9  1  PadR            Transcriptional regulator PadR-like family
      0.021   15.2   0.1      0.051   13.9   0.1    1.7  1  Rrf2            Transcriptional regulator
      0.023   14.8   0.0       0.05   13.7   0.0    1.6  1  HTH_28          Helix-turn-helix domain
      0.023   14.6   1.9      0.056   13.4   0.0    2.6  3  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.024   14.7   0.0       0.24   11.5   0.0    2.3  2  HTH_7           Helix-turn-helix domain of resolvase
      0.036   14.0   0.2       0.12   12.4   0.1    1.8  2  Dimerisation2   Dimerisation domain
      0.071   12.9   0.0       0.22   11.3   0.0    1.8  1  HTH_38          Helix-turn-helix domain
      0.072   12.8   0.0       0.16   11.7   0.0    1.6  1  HTH_DeoR        DeoR-like helix-turn-helix domain
      0.081   12.8   0.0       0.24   11.3   0.0    1.9  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.091   13.2   0.5        3.3    8.2   0.1    2.4  2  HTH_26          Cro/C1-type HTH DNA-binding domain
       0.13   12.3   0.0       0.25   11.3   0.0    1.5  1  HTH_36          Helix-turn-helix domain
       0.15   11.8   0.0       0.39   10.5   0.0    1.7  1  CobS_N          Cobaltochelatase CobS subunit N terminal


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.18   1.1e+02      40      78 ..      32      70 ..      21      74 .. 0.84
   2 !  129.8   0.0   8.3e-41   5.1e-38       2     128 ..     129     254 ..     128     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.18
                HT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTT CS
        IclR 40 lelkrlterTitdpeeLleeLakvReqGyavdreEeeeg 78
                +++++l +r + ++ +  + L+++++ Gy  +++E+e++
  EHU00631.1 32 HGITELAQRLMMSKSTVYRFLQTMKALGYVAQEGESEKY 70
                678889999999999999*****************9975 PP

  == domain 2  score: 129.8 bits;  conditional E-value: 8.3e-41
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                 +lr+ s+iG r pl++ta+GK+lLa+ ++ee++a+ler +++  t +T+ d  +L+e+L +vR+qGy  d+eE+e gvrciA+p+fd++g  va++s+s
  EHU00631.1 129 NLRMASRIGHRNPLHSTALGKVLLAWRSREEVNAILERMTFTINTANTLPDAGALREALGQVRAQGYGEDNEEQEVGVRCIAVPVFDRFGVAVAGLSLS 227
                 67999********************************************************************************************** PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkisr 128
                 +pt r++ ++ ++ ++ l+rea + +s 
  EHU00631.1 228 FPTLRFSAANKQQ-YVTLLREAGQRLSS 254
                 **********999.*********99985 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.2e-17   7.7e-15       1      52 []      15      65 ..      15      65 .. 0.96
   2 ?   -1.9   0.0         5   3.1e+03      22      40 ..      87     105 ..      74     116 .. 0.55

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.2e-17
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                s+++ + iL+al+e++   +++elA+r+ ++kStv+R+Lqt+  lGyv q+g
  EHU00631.1 15 SVQKVFGILQALSEERDH-GITELAQRLMMSKSTVYRFLQTMKALGYVAQEG 65
                799**************6.9*****************************985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5
                 HHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  22 selArrtglpkStvhRlLq 40 
                 s+l r ++++    +Rl++
  EHU00631.1  87 SDLIRSADVHMRELSRLTK 105
                 5555555555444455544 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-08   1.3e-05       6      45 ..      21      61 ..      17      63 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.2e-08
                HHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  6 kILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                 IL++L+e + + ++ela  l +s+stv + L  ++ +G+V
  EHU00631.1 21 GILQALSEeRDHGITELAQRLMMSKSTVYRFLQTMKALGYV 61
                59******999*****************************9 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.1e-08   3.8e-05       5      44 ..      22      60 ..      18      67 .. 0.89
   2 ?   -2.0   0.0         6   3.7e+03      35      48 ..     241     254 ..     239     258 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.1e-08
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                il+ L e+r+   + eLA++L +S++tv+r ++++++lg+
  EHU00631.1 22 ILQALSEERD-HGITELAQRLMMSKSTVYRFLQTMKALGY 60
                9999977776.7889***********************95 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6
      HTH_11  35 dIkaLeelgvpIes 48 
                 ++  L+e+g ++ s
  EHU00631.1 241 YVTLLREAGQRLSS 254
                 55556666544444 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.3e-07   8.1e-05       6      47 ..      20      61 ..      17      62 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.3e-07
      HTH_24  6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + IL++L ++ +  ++eLA+rl +S+stv r l+ ++  G++
  EHU00631.1 20 FGILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGYV 61
                78***************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.7e-07   0.00023       6      47 ..      20      61 ..      17      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.7e-07
                HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                f iL  l+e+ ++ ++eLa +l++skstv r+l ++   G++
  EHU00631.1 20 FGILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGYV 61
                56999*****************************99888887 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.9e-07   0.00055      22      55 ..      32      65 ..      19      69 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.9e-07
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverrp 55
                  ++ela+rl +sks+v r l+ + a G+v ++ 
  EHU00631.1 32 HGITELAQRLMMSKSTVYRFLQTMKALGYVAQEG 65
                6689**************************9874 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.2e-06    0.0013      15      58 ..      24      67 ..      20      76 .. 0.84
   2 ?   -1.0   0.0       2.6   1.6e+03       6      22 ..     233     249 ..     230     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.2e-06
                HHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 15 laLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                +aL ++    ++e+a++l  ++s+vY+ L+ ++  G+V  e ++
  EHU00631.1 24 QALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGYVAQEGES 67
                566677778899**************************998554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
                 HHHHCCCHCHHHHHHCC CS
        TrmB   6 LseyEakvYlaLlklgp 22 
                 +s    + Y++Ll++  
  EHU00631.1 233 FSAANKQQYVTLLREAG 249
                 67788899*****6544 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     7e-06    0.0043      14      60 ..      21      67 ..      11      68 .. 0.93
   2 ?   -2.1   0.1       6.9   4.3e+03      41      49 ..      93     101 ..      83     102 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7e-06
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +il+aL++++ +  +ela+rl +sk+t+++ L+++   g+v +++e+
  EHU00631.1 21 GILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGYVAQEGES 67
                8******************************************9997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.9
                 HHHHHHHHH CS
      HTH_20  41 lsyHLrvLe 49 
                 ++ H+r+L+
  EHU00631.1  93 ADVHMRELS 101
                 455777765 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   9.4e-06    0.0058      19      56 ..      20      57 ..      12      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.4e-06
                HHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHH CS
         Mga 19 yqllkflfeeeevsieelaqelyiSestlkrkikelnk 56
                + +l+ l ee+   i+elaq+l++S+st++r ++ ++ 
  EHU00631.1 20 FGILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKA 57
                78999999***********************9998875 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.2e-06    0.0044      25      63 ..      22      60 ..       8      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.2e-06
                HHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSH CS
       HTH_6 25 ilaspdkaielsikalAkaaavSeativrfakkLGfkGF 63
                il+  ++ +  +i +lA+ +  S++t+ rf +++ + G+
  EHU00631.1 22 ILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGY 60
                78888889999***********************99998 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.3e-05     0.014      24      56 ..      33      65 ..      14      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.3e-05
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    + ++la+rL  s+s+V   l+ ++  Gyv  e+
      EHU00631.1 33 GITELAQRLMMSKSTVYRFLQTMKALGYVAQEG 65
                    5689*************************8775 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.013       8      61 ..      19      75 ..      14     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      HTH_45  8 iadILeais.egeakkTkimykanLsykllnkYLdmLvekgli..kkskekYvlTek 61
                ++ IL+a+s e +   T++  +  +s +++ ++L+++   g++  + ++ekY+lT k
  EHU00631.1 19 VFGILQALSeERDHGITELAQRLMMSKSTVYRFLQTMKALGYVaqEGESEKYSLTLK 75
                788*****9777889****************************6444899*****76 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00021      0.13      44      62 ..      34      52 ..      31      53 .. 0.89
   2 ?   -0.2   0.0       1.8   1.1e+03      16      36 ..     229     249 ..     222     250 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
      HTH_22 44 vekvAekLgiSraTvYryL 62
                + ++A++L +S+ TvYr L
  EHU00631.1 34 ITELAQRLMMSKSTVYRFL 52
                6789*************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.8
      HTH_22  16 pverltkeekieivraLdekG 36 
                 p  r + + k++ v  L e+G
  EHU00631.1 229 PTLRFSAANKQQYVTLLREAG 249
                 666889999********9998 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.9e-05      0.03       5      40 ..      23      59 ..      22      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.9e-05
      HTH_29  5 llllaeGvs.tvsqiAkllglsrrtvyrwlkrfeegG 40
                l++l+e+ +  + ++A++l +s++tvyr+l  + + G
  EHU00631.1 23 LQALSEERDhGITELAQRLMMSKSTVYRFLQTMKALG 59
                56666666666******************99887776 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.2e-05     0.051      13      53 ..      27      67 ..      19      75 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.2e-05
      HTH_27 13 rhrrrrkkl.adlcgrlnvedshisyslkkLtekGLv.ertgd 53
                   ++r++  ++l++rl++++s++   l  + + G+v ++ ++
  EHU00631.1 27 S--EERDHGiTELAQRLMMSKSTVYRFLQTMKALGYVaQEGES 67
                4..3444444***************************333333 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.4e-05     0.034      37      61 ..      40      64 ..      22     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.4e-05
                TTT--HHHHHHHHHHHHHTTSEEEE CS
         FUR 37 dpeislaTVYrtLklleeaglvkel 61
                +  +s +TVYr L++++ +g v + 
  EHU00631.1 40 RLMMSKSTVYRFLQTMKALGYVAQE 64
                5579****************99764 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   0.00011     0.066       1      59 [.      22      73 ..      22      82 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
                HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS- CS
        PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpp 59
                iL+ l+e+  +G     el+++    l +s++++Y+ L+++++ g+v++e e ++ + +
  EHU00631.1 22 ILQALSEERDHGI---TELAQR----LMMSKSTVYRFLQTMKALGYVAQEGESEKYSLT 73
                6777777777773...455555....56899*****************99887765555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   8.2e-05     0.051      16      67 ..      22      72 ..      12      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.2e-05
                HHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEE CS
        Rrf2 16 yLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrL 67
                +L++ +ee+   ++e+a+r  +s+s + + l++++  g+v  ++G +  y+L
  EHU00631.1 22 ILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGYVA-QEGESEKYSL 72
                455556666688***************************95.6676666666 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.1e-05      0.05       5      37 ..      22      56 ..      20      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.1e-05
      HTH_28  5 iikllaa..GhsvreaArelgisrrtvyrWikrye 37
                i+++l +   h ++e+A++l +s +tvyr ++   
  EHU00631.1 22 ILQALSEerDHGITELAQRLMMSKSTVYRFLQTMK 56
                55666642256******************998655 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     9e-05     0.056      25      53 ..      35      63 ..      17      74 .. 0.89
   2 ?   -1.7   0.0       4.7   2.9e+03      40      50 ..      98     108 ..      83     130 .. 0.57
   3 ?   -1.8   0.1       5.2   3.2e+03      34      45 ..     156     167 ..     155     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9e-05
                HHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglisr 53
                +elA++l ++ +tv r l+ +k  g++ +
  EHU00631.1 35 TELAQRLMMSKSTVYRFLQTMKALGYVAQ 63
                59***********************9984 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.7
                 HHHHHHHHTTS CS
   HTH_Crp_2  40 rilseLkregl 50 
                 r+ls+L +e +
  EHU00631.1  98 RELSRLTKETI 108
                 44444444433 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.2
                 SHHHHHHHHHHH CS
   HTH_Crp_2  34 tretvsrilseL 45 
                 +re v+ il ++
  EHU00631.1 156 SREEVNAILERM 167
                 79******9987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00039      0.24      20      42 ..      29      52 ..      23      54 .. 0.84
   2 ?   -0.1   0.0       1.6     1e+03       9      22 ..     237     250 ..     233     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00039
                TT.--STTTSSSS---SSSS--SS CS
       HTH_7 20 eG.isiskIAkevnisRsTvYRyl 42
                e  + i+++A ++  s+sTvYR l
  EHU00631.1 29 ERdHGITELAQRLMMSKSTVYRFL 52
                555789****************87 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.6
                 HHHGGGGSSTTTT- CS
       HTH_7   9 ndinrvvkLleeGi 22 
                 n++++v  L+e+G+
  EHU00631.1 237 NKQQYVTLLREAGQ 250
                 45899999999998 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00019      0.12      22      77 ..      21      73 ..      13      78 .. 0.80
   2 ?   -0.9   0.0       2.7   1.7e+03      20      63 ..      73     114 ..      70     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
  Dimerisation2 22 gvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekkeekkalYsnt 77
                   g+  +L ee+ +   e+a++l +s + + r+l+++ aLg   +e   ++++ Ys t
     EHU00631.1 21 GILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGYVAQE---GESEKYSLT 73
                   4455566677888**************************99955...334678776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.7
  Dimerisation2  20 eLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLe 63 
                     L++F++  +   l+ +++ ++ ++ ++ ++rL +  + Lg L 
     EHU00631.1  73 TLKLFEVGSN--ALQHSDLIRSADVHMRELSRLTKETIHLGALD 114
                    6888888766..88888888999999999999999888888776 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00035      0.22      18      41 ..      29      52 ..      22      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
      HTH_38 18 aeGlslreIArrLgrspsTIsREl 41
                ++++++ e A+rL  s+sT++R l
  EHU00631.1 29 ERDHGITELAQRLMMSKSTVYRFL 52
                46799*****************66 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00026      0.16       5      43 ..      22      60 ..      20      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
    HTH_DeoR  5 ilellkqqgklsveelvellgvSeaTiRRDLneLeeqgl 43
                il+ l +++   ++el+++l  S+ T+ R L+++++ g 
  EHU00631.1 22 ILQALSEERDHGITELAQRLMMSKSTVYRFLQTMKALGY 60
                999************************999999888775 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038      0.24       8      36 ..      22      50 ..      20      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                   IL+aL e      +eLA+r+ +S stv r
     EHU00631.1 22 ILQALSEERDHGITELAQRLMMSKSTVYR 50
                   9**************************87 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0054       3.3       6      33 ..      27      54 ..      23      59 .. 0.83
   2 ?    2.8   0.0      0.26   1.6e+02      14      35 ..      87     108 ..      82     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0054
      HTH_26  6 madrgitkseLargtgisaatlsrlvkg 33
                  +r+  ++eLa+++ +s++t++r+++ 
  EHU00631.1 27 SEERDHGITELAQRLMMSKSTVYRFLQT 54
                567777899***************9875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.26
      HTH_26  14 seLargtgisaatlsrlvkgkp 35 
                 s+L r ++++   lsrl k+++
  EHU00631.1  87 SDLIRSADVHMRELSRLTKETI 108
                 899****************985 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00041      0.25      10      55 .]      19      61 ..      15      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00041
      HTH_36 10 llgslasfanknggcfpsqetlakrlglsknTvsraikeLeqlGyi 55
                ++g+l +++ ++ +       la+rl +sk+Tv+r ++    lGy+
  EHU00631.1 19 VFGILQALSEERDH---GITELAQRLMMSKSTVYRFLQTMKALGYV 61
                88888888888877...8899*****************99999996 PP

>> CobS_N  Cobaltochelatase CobS subunit N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00063      0.39       5      18 ..       9      22 ..       7      22 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00063
      CobS_N  5 lPDtkvsvRevFGI 18
                +PD   sv++vFGI
  EHU00631.1  9 QPDAVSSVQKVFGI 22
                8************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2048.56
//
Query:       EHU00632.1  [L=246]
Description: putative transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-35  120.6  15.6      8e-35  120.4  15.6    1.0  1  MFS_1       Major Facilitator Superfamily
    5.1e-10   38.8   7.0    5.9e-10   38.6   7.0    1.1  1  Sugar_tr    Sugar (and other) transporter
    5.5e-05   22.6  12.5    7.5e-05   22.2  12.5    1.3  1  MFS_4       Uncharacterised MFS-type transporter YbfB
     0.0075   14.6   1.8     0.0075   14.6   1.8    1.8  2  OATP        Organic Anion Transporter Polypeptide (OATP) fami
  ------ inclusion threshold ------
      0.062   11.7  11.9      0.078   11.3  11.9    1.1  1  MFS_3       Transmembrane secretion effector
       0.13   11.1   6.8       0.16   10.8   6.8    1.2  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4  15.6   2.7e-38     8e-35       1     184 [.      22     204 ..      22     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 2.7e-38
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++++++++ l+ si+++alp +++++l++sp++  +++ +y ++ +++ l l++l+d +G rrv+ +gl++fa++++++++++sl+ll ++rvlqGlg+
  EHU00632.1  22 IAIGLIMAVLDGSIANVALP-TISRELQASPAQSVWVINAYQIAIVASLLSLSFLGDIVGYRRVYQAGLVVFAITSVFCALSPSLPLLTLGRVLQGLGG 119
                 58999***************.******************************************************77777767777************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrksp 184
                 +a++++  ali+ ++p++  gr+i++ ++ ++++++ gp ++++++s ++Wr++f+i+ +++++ ++l+l +lp++p + k+++ 
  EHU00632.1 120 AAIMSVNTALIRIIYPPRYLGRGIAINALLVAISTAAGPTVAAAILSFASWRWLFLINLPLGVVTLWLALRYLPDNPQRAKTQKF 204
                 *****************************************************************99999999999999988765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   7.0     2e-13   5.9e-10      34     194 ..      40     195 ..      18     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2e-13
                 T--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS- CS
    Sugar_tr  34 lsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiAp 132
                 l + + + ++s  +s ++ +++++  +++ l +++lgd++G++ ++ ++ v+f i +v +a+++   s+ +l++gRvl G+g  ++  + + +i  i p
  EHU00632.1  40 LPTISRELQASPAQSVWVINAYQIAIVASLLSLSFLGDIVGYRRVYQAGLVVFAITSVFCALSP---SLPLLTLGRVLQGLGGAAIMSVNTALIRIIYP 135
                 444445555678899*************************************************...******************************** PP

                 SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 133 kklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                 +++ g+ + ++ l +++    + ++ +++  + +   wr+l+ ++l + ++ l l    lP+ 
  EHU00632.1 136 PRYLGRGIAINALLVAISTAAGPTVAAAILSFAS---WRWLFLINLPLGVVTLWLAlRYLPDN 195
                 ******************9999999999999999...99999999999976554431455655 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2  12.5   2.5e-08   7.5e-05     212     342 ..      38     169 ..       8     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.5e-08
       MFS_4 212 tFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflaitalvlqlarelapp 310
                 + l+ i r+  +++++   +   + +a+++++l    + +  g rr++ a l++ a+  + + lsps+ +l ++ vl Gl   ai+++ ++l+r ++pp
  EHU00632.1  38 VALPTISRELQASPAQSVWVINAYQIAIVASLLSLSFLGDIVGYRRVYQAGLVVFAITSVFCALSPSLPLLTLGRVLQGLGGAAIMSVNTALIRIIYPP 136
                 55777777766666655444455789999999999**************************************************************** PP

       MFS_4 311 at.rrllglmTasfgigQilGpllasllaeatg 342
                     r +++  +  +i  ++Gp +a+++ ++++
  EHU00632.1 137 RYlGRGIAINALLVAISTAAGPTVAAAILSFAS 169
                 *9899*********************9998776 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.8   2.5e-06    0.0075       8      85 ..      24     101 ..      17     106 .. 0.88
   2 ?   -0.3   0.2     0.083   2.5e+02     134     193 ..     107     166 ..     102     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   8 llglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllal 85 
                 +  ++ ++ +++ ++++ ti ++ + + ++s ++  +++i+ ++ +l +s++g+ +   r+  +g++++a+ s+ +al
  EHU00632.1  24 IGLIMAVLDGSIANVALPTISRELQASPAQSVWVINAYQIAIVASLLSLSFLGDIVGYRRVYQAGLVVFAITSVFCAL 101
                 33444477778899***********************************************************99998 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.083
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllk 193
                 l+ l+ +l+G+G+++i+++ ++ i     ++     ++i   l ++  a G ++++++l+
  EHU00632.1 107 LLTLGRVLQGLGGAAIMSVNTALIRIIYPPRYLGRGIAINALLVAISTAAGPTVAAAILS 166
                 6889999********999999999888888888888888888888888888777777776 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  11.9   2.6e-05     0.078      15     189 ..      22     191 ..      11     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
       MFS_3  15 iWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlli 113
                 i i  +++ l + i +va   +  +++asp++   v  a  + i+   +    l D++  R+v  a+ ++ a++sv+ +++  l ll+        +l 
  EHU00632.1  22 IAIGLIMAVLDGSIANVALPTISRELQASPAQSVWVINAYQIAIVASLLSLSFLGDIVGYRRVYQAGLVVFAITSVFCALSPSLPLLTLGR-----VLQ 115
                 4455677777788888999999999999999988888888887775555557899********************9999998887666444.....567 PP

       MFS_3 114 giGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrw 189
                 g+G a  +    A +  + + r +   +a+n++ + i+ ++GP ++  +++++   + f +n    ++ ++  lr 
  EHU00632.1 116 GLGGAAIMSVNTALIRIIYPPRYLGRGIAINALLVAISTAAGPTVAAAILSFASWRWLFLINLPLGVVTLWLALRY 191
                 88888888999************************************************99976655555555444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.8   5.4e-05      0.16     264     383 ..      56     174 ..      12     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.4e-05
  MFS_1_like 264 slvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglG 362
                  ++    +a +  ++  + l +++G +++  ++l++++++ +  a+  ++ l+ +  vL+g+  +++ ++ +  +++i p+++ ++g+++ + l + + 
  EHU00632.1  56 WVINAYQIAIVASLLSLSFLGDIVGYRRVYQAGLVVFAITSVFCALSPSLPLLTLGRVLQGLGGAAIMSVNTALIRIIYPPRYLGRGIAINALL-VAIS 153
                 455555566777788889999********************************************************************97665.7888 PP

  MFS_1_like 363 ralGsliGGllwdlksaiflF 383
                 +a G  ++ ++    s ++lF
  EHU00632.1 154 TAAGPTVAAAILSFASWRWLF 174
                 888888886666777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1817.84
//
Query:       EHU00633.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-97  325.6   3.9    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.037   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.041   13.4   2.5      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.27   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.77    8.9   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.5    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.5    7.1   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00633.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00633.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00633.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00633.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00633.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00633.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00633.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00633.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU00633.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00633.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00633.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00633.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00633.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00633.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU00633.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00633.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00633.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00633.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00633.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU00633.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00633.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU00633.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU00633.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00633.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00633.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU00633.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00633.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00633.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU00633.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU00633.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00633.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00633.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00633.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00633.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1049  (0.0585086); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 3704.46
//
Query:       EHU00634.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00634.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 889.32
//
Query:       EHU00635.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00635.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00635.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00635.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00635.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 838.74
//
Query:       EHU00636.1  [L=371]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-60  203.5   5.3    1.5e-59  201.8   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    9.3e-15   54.8   1.5    2.2e-14   53.6   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
      5e-11   43.2   9.0    1.1e-10   42.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0068   15.6   0.9      0.013   14.7   0.9    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
  ------ inclusion threshold ------
      0.013   15.1   1.0       0.02   14.5   1.0    1.3  1  Exonuc_VII_L     Exonuclease VII, large subunit
      0.013   15.8   4.8      0.059   13.7   0.5    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.026   14.8   2.8      0.044   14.1   2.8    1.3  1  Troponin         Troponin
       0.03   14.1   8.0      0.047   13.5   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.031   13.5   0.6      0.047   12.9   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.032   14.1   0.4         13    5.8   0.0    3.1  3  UME              UME (NUC010) domain
      0.033   12.7   7.5      0.044   12.3   7.5    1.2  1  FUSC             Fusaric acid resistance protein family
      0.074   12.8   3.0       0.21   11.3   0.4    2.1  2  LXG              LXG domain of WXG superfamily
      0.096   12.5  10.8       0.14   11.9  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.17   12.0   1.7       0.68   10.1   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
       0.22   11.6  10.9       0.38   10.8  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.25   11.4   5.3        2.2    8.4   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.31   11.8   2.3        0.9   10.3   2.3    1.8  1  LCE6A            Late cornified envelope protein 6A family
        0.5    9.6   3.0       0.71    9.1   3.0    1.1  1  TMPIT            TMPIT-like protein
       0.81    9.8   5.6        1.5    9.0   5.6    1.4  1  CREPT            Cell-cycle alteration and expression-elevate
       0.93    9.0   7.9          2    7.9   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.1    9.0   3.5        4.2    7.1   3.5    1.9  2  USP8_interact    USP8 interacting
        1.6    9.1   6.7        0.2   12.0   2.4    1.8  1  HalX             HalX domain
        3.2    8.1   8.9        5.7    7.3   8.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        6.4    7.5   9.2        5.2    7.8   1.1    2.8  3  SlyX             SlyX
        7.8    7.1  12.3        6.6    7.4   0.4    3.3  3  MerR-DNA-bind    MerR, DNA binding
        8.6    6.4   8.5        6.1    6.9   0.6    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.3     0.097        67     167     221 ..      34      91 ..      20     121 .. 0.48
   2 !  201.8   0.1   2.1e-62   1.5e-59       2     180 ..     187     371 .]     186     371 .] 0.99

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.097
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00636.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 201.8 bits;  conditional E-value: 2.1e-62
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00636.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigkl 180
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigkl
    EHU00636.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKL 371
                   ***********************************************999**********************98.***********997 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   1.5   3.1e-17   2.2e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 3.1e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00636.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   9.0   1.6e-13   1.1e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.6e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00636.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.9   1.9e-05     0.013      47     106 ..      34      90 ..      24     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00636.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.0   2.9e-05      0.02     144     233 ..      10     101 ..       3     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerlk 233
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l 
    EHU00636.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPALP 101
                   33444555555555666666677789999999999988886655439999**************************999554331...2222222 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   8.5e-05     0.059      22      56 ..      23      57 ..      14      71 .. 0.81
   2 ?    3.4   0.5      0.14        99      33      53 ..      71      91 ..      66      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.5e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00636.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00636.1 71 ARQVREAEERISALQEEMAEV 91
                5789999999******99986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.8   6.4e-05     0.044      46     120 ..       9      97 ..       3     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU00636.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666666 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.0   6.8e-05     0.047     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.8e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00636.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888877777765557777889**************9862678999**********************************99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   6.8e-05     0.047      24      77 ..      37      92 ..      29     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.8e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00636.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.8   1.2e+03      26      54 ..      16      44 ..       8      59 .. 0.77
   2 ?    5.8   0.0     0.019        13      15      54 ..      64     103 ..      58     124 .. 0.81
   3 ?    4.4   0.0     0.049        34       9      39 ..     341     371 .]     339     371 .] 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.8
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00636.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                78999999999999999999988777655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.019
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00636.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 566555554.888888889999458***************8 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.049
         UME   9 iltrlseklndshgkkslaekkraikaleel 39 
                  +++  +k++d+h +++++   +a+k +++l
  EHU00636.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKL 371
                 689999********************99976 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   7.5   6.4e-05     0.044     213     295 ..       4      92 ..       1     124 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00636.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996677888888888888888888887766441 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4    0.0003      0.21     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.0   0.2      0.21   1.5e+02      97     130 ..      63      96 ..      61     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00636.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00636.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5678888888999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  10.8    0.0002      0.14      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00636.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00098      0.68      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?    0.1   0.1       1.3     9e+02       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00098
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00636.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00636.1 167 ACCSCDHI 174
                  35555555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  10.9   0.00055      0.38      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00055
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00636.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0033       2.2      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.9   1.2     0.078        54      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0033
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00636.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.078
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00636.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.3    0.0013       0.9      17      71 ..     115     172 ..     101     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0013
       LCE6A  17 cspPkrknpslapcsapCgasc....sgGCsstsqrpraqkpvssrrahrkkprCLsGd 71 
                  s+P r+ ++l+p  ++C+a      + GC+ ++q   + ++    + +r+k+ C s d
  EHU00636.1 115 ASLP-RETLTLSPAETTCPACGgelnALGCDVSEQLELISSAFKVIETQRPKLACCSCD 172
                 3566.56789999999999877777788*******99999999999*********9876 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.0     0.001      0.71      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.001
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00636.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.6    0.0022       1.5      45     141 ..      11     115 ..       6     117 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0022
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU00636.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777776633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU00636.1 110 RKPLPA 115
                 999996 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.9    0.0029         2      70     153 ..      13      98 ..       2     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0029
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00636.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.5    0.0061       4.2       2      49 ..      12      61 ..      11      93 .. 0.80
   2 ?   -2.0   0.0       3.9   2.7e+03      66      83 ..     218     235 ..     196     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0061
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHU00636.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgK 61
                   9***************************************9998766552 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.9
  USP8_interact  66 WveslklarvtrWGglis 83 
                     + +l++a++ rW g +s
     EHU00636.1 218 QGVELSRATLGRWSGAVS 235
                    566899999999999988 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.4    0.0003       0.2       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0003
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU00636.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.9    0.0083       5.7       9      86 ..      14      95 ..      10     109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0083
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU00636.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                56777778888899999999*********************966655.23466666666668888888777544444555444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.1    0.0075       5.2      22      53 ..      12      43 ..       7      49 .. 0.86
   2 ?    2.5   0.1      0.32   2.2e+02      22      45 ..      33      56 ..      33      68 .. 0.83
   3 ?    2.8   1.9      0.26   1.8e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0075
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00636.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                777899********************887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllae 45
                L++ va+ + +i rl++ +++l++
  EHU00636.1 33 LSQRVAAYASEINRLKALVAKLQR 56
                789999999999999999988864 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.26
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00636.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   3.4      0.18   1.3e+02      21      64 ..      13      56 ..      10      57 .. 0.84
   2 ?    7.4   0.4    0.0096       6.6      32      60 ..      61      89 ..      58      93 .. 0.86
   3 ?    0.5   0.0       1.3   9.3e+02      25      51 ..     329     355 ..     327     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.18
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHU00636.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   778866666777777888***********************997 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0096
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHU00636.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   5788999*****************98555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.3
                    HHHHSTTTBHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  25 alyddrappcqdvrallarklaeleer 51 
                    aly+d++ + ++  a ++rk++++ +r
     EHU00636.1 329 ALYEDGRITEAACMAHARRKIHDVHAR 355
                    5788888888999999*******9987 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.6    0.0089       6.1      23      69 ..      11      57 ..       7      62 .. 0.86
   2 ?    3.2   2.0      0.13        90      46      70 ..      64      88 ..      60      94 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0089
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHU00636.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                5666678899*************************999999999875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.13
  TMF_DNA_bd 46 ekeikelkkkleklekeleeleerl 70
                ek  +++ +++++ e+ ++ l+e++
  EHU00636.1 64 EKLREKTARQVREAEERISALQEEM 88
                5555555666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      922  (0.0514251); expected 358.6 (0.02)
Passed Vit filter:                       139  (0.0077528); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 2895.10
//
Query:       EHU00637.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00637.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 929.92
//
Query:       EHU00638.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00638.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00638.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00638.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00638.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 793.88
//
Query:       EHU00639.1  [L=74]
Description: hypothetical protein CKS_2911 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-11   42.6   0.1    5.4e-11   42.5   0.1    1.0  1  FMN_bind_2  Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1     3e-15   5.4e-11      11      82 ..      10      73 ..       2      74 .] 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 3e-15
                -HCHHHHHHHHS-EEEEEEEETTEEEEEEEE-EE...-TTSSEEEEEEETTSGGGGGT.TTS-EEEEEEEEE CS
  FMN_bind_2 11 dleelrqlirenplgtLvtaiesglqashiPflldeeekgkgkLrgHlaraNpqakaleeeeevlvvfqgpd 82
                ++ee+r+++ ++ +gtLv++    lq+shiPf +    +g+++L++Hlar+Npq  al+++  +l+ +++ +
  EHU00639.1 10 TPEECRHFLTQHTFGTLVSS---DLQISHIPFCF----NGENVLETHLARNNPQRVALAQQP-CLLSVRKRH 73
                67899*************86...588********....77779***************8888.999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 605.66
//
Query:       EHU00640.1  [L=138]
Description: glutathione-dependent formaldehyde-activating enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-09   37.2   0.9    2.8e-09   37.2   0.9    1.6  2  GFA            Glutathione-dependent formaldehyde-activating 
  ------ inclusion threshold ------
      0.032   14.5   1.6      0.062   13.5   1.6    1.5  1  Cas_CXXC_CXXC  CRISPR-associated protein (Cas_CXXC_CXXC)


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.6      0.73   6.6e+03       2       5 ..       8      11 ..       7      13 .. 0.80
   2 !   37.2   0.9   3.2e-13   2.8e-09       2      82 ..      29     104 ..      28     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.73
         GFA  2 lChC 5 
                +ChC
  EHU00640.1  8 QCHC 11
                7*** PP

  == domain 2  score: 37.2 bits;  conditional E-value: 3.2e-13
         GFA   2 lChCsdCrkasgsaftanavvkaealelleg..elkeykktadsgnkvtrsfCpeCgsplyseesaapevvivrvGtlddpek 82 
                 +C+Cs Cr + +    ++++ +a+ l++ +g  +l+ey++   ++ ++ ++fC+ Cg   +++++ +pe++ v++++l   + 
  EHU00640.1  29 RCNCSFCRMRGA----VVVFAPASGLTIHKGkaALSEYRF---NSGQAVHYFCSVCGIYTFHQSRSNPEQFGVNAACLTGVSP 104
                 7******98876....89999**********999999998...6778889***************************987655 PP

>> Cas_CXXC_CXXC  CRISPR-associated protein (Cas_CXXC_CXXC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.6     7e-06     0.062       6      63 ..      30      82 ..      25      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7e-06
  Cas_CXXC_CXXC  6 gnCitCgeRnvkqlkgklsvlsksgivpLlgsegslknyfwngknkadiCpiCklllf 63
                    nC +C+ R  +++++      +sg++   g     +  f +g+ + ++C++C +++f
     EHU00640.1 30 CNCSFCRMRGAVVVFA-----PASGLTIHKGKAALSEYRFNSGQAVHYFCSVCGIYTF 82
                   69*************9.....788886677775555666999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1136.58
//
Query:       EHU00641.1  [L=367]
Description: HipA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.3e-17   61.4   0.0    1.2e-16   61.0   0.0    1.1  1  HipA_C       HipA-like C-terminal domain
    1.4e-15   57.7   0.0    2.6e-15   56.9   0.0    1.5  1  Couple_hipA  HipA N-terminal domain


Domain annotation for each model (and alignments):
>> HipA_C  HipA-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.4e-20   1.2e-16      36     211 ..     130     332 ..     113     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.4e-20
                 HHHHHHHHHHHHTT--B--EEEEEET..EEEEEEE-SSEEE.......EE--EEEHHHHCT--GGGCSCC..-.-HHHHHHHHCCCTTHH..HHHHHHH CS
      HipA_C  36 enEylcmrlakaaGldvaevelveve..ekallveRFDrrk.......erlhqedacqllgldpeekYek..g.syeelakllrqlsataseedleelf 122
                 +n +lc+ la+++Gl+v++++ ++ e  +  l+++R Drr+       +rl+ e +cq+lg +p+  +e+  g ++e l+ ll  +++  + +d+e ++
  EHU00641.1 130 DNAFLCLALARELGLPVPDARPLRQEggGWQLCITRDDRRWnadrtqcYRLPTENLCQALGFPPACSHEQsgGpGLEALMGLLMGSRS--ALTDREAIM 226
                 5679*******************99998555*********8888999****************98888887658**********9954..46******* PP

                 HHHHHHHHCTBTT--GGGSE.EEECCCEEEE--B-S--BSGCCTTT.........ECCEECCSSSEEEE........HHHHHHHCT--HHHHHHHHHHH CS
      HipA_C 123 rrmvfniligNtDdHlKNfs.llrgggrwrLaPaYDlvstaayedee........lalsiggekgrear........faelaeelglkekaaeeiieev 204
                 r +vf++l+g t   ++ +  ++ ++g++rLaP+  lvs+++ ++++        l l+++g  g+  r        f   a+++  +e++++ i++ +
  EHU00641.1 227 RCLVFQWLTGITSLDARHIRlFIEREGSFRLAPFRCLVSAWPARSQRkmdrddiqLPLGVTGPAGKLHRitqiapshFLGSARSVRFSEEQMHTILNGF 325
                 ********************88888899************99954446899999989999998888777888888887777888889999999999999 PP

                 HHHHHHH CS
      HipA_C 205 veaavaa 211
                 v+a++aa
  EHU00641.1 326 VSALPAA 332
                 9988876 PP

>> Couple_hipA  HipA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   2.9e-19   2.6e-15       3      97 ..       6     102 ..       4     104 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.9e-19
                  EEETTEEEEEEEEETTTEEEEEE-HHHHH.TCS--SCTTC-TTSTEB-CHHHHHHHHTTSBSSHHHHHHHHH.HTSSTTSHHHHHHHHTTCESTTEE CS
  Couple_hipA   3 VflngervGalardeegvarFeydpafle.akgpelSlslplsaepytskglpgffanlLPegelrellarr.rgisskdelelLaaiGadlmGale 97 
                   ++ngervG+l ++++g+++F+y++++l+ +  ++lSlslpl++++++s ++  ff+nlL   +l e  +++ ++++s   + +L+ +G +l+Gal 
   EHU00641.1   6 AWMNGERVGTLMQHHDGTLSFQYAASWLQhPLTRPLSLSLPLQRAAHHSVRVSYFFENLLSPIPLTEKEKNQaFQTKSCGVFTVLQKVGYRLPGALI 102
                  69***************************999********************************8877655527*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2956.79
//
Query:       EHU00642.1  [L=79]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-16   57.5   0.1    1.3e-15   57.2   0.1    1.3  1  HTH_3        Helix-turn-helix
    6.4e-12   45.7   0.1    7.7e-12   45.4   0.1    1.1  1  HTH_31       Helix-turn-helix domain
    5.3e-10   39.1   0.4    6.4e-10   38.9   0.4    1.1  1  HTH_37       Helix-turn-helix domain
    2.1e-08   34.1   0.0    2.6e-08   33.8   0.0    1.2  1  HTH_19       Helix-turn-helix domain
      7e-08   32.8   0.1    9.6e-08   32.4   0.1    1.2  1  HTH_26       Cro/C1-type HTH DNA-binding domain
    0.00033   20.5   0.0    0.00061   19.6   0.0    1.5  1  HTH_25       Helix-turn-helix domain
     0.0014   18.5   0.2     0.0033   17.3   0.0    1.7  2  MarR         MarR family
     0.0014   18.1   0.6      0.024   14.2   0.0    2.6  2  HTH_24       Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.011   15.4   0.2      0.069   12.9   0.0    2.1  3  HTH_38       Helix-turn-helix domain
      0.029   14.4   0.8      0.077   13.0   0.8    1.8  1  Pou          Pou domain - N-terminal to homeobox domain
       0.08   12.8   0.1       0.18   11.6   0.0    1.7  2  HTH_23       Homeodomain-like domain
      0.099   12.6   0.0       0.46   10.4   0.0    2.2  2  Terminase_5  Putative ATPase subunit of terminase (gpP-like)
       0.11   12.3   0.5       0.39   10.6   0.0    2.1  2  HTH_IclR     IclR helix-turn-helix domain
       0.12   12.4   0.5       0.52   10.3   0.1    2.1  2  HTH_Crp_2    Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1     1e-18   1.3e-15       1      53 [.      12      64 ..      12      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1e-18
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                lk+lR+q+g++q++LA+++G++++t+s+ En   + sletl+k+++aL++ l+
  EHU00642.1 12 LKRLRQQQGWTQTDLAKRVGLKQATLSHFENYPESTSLETLFKILQALDIALA 64
                89******************************888*************99775 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1     6e-15   7.7e-12       1      57 [.       7      62 ..       7      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 6e-15
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +L+ +L++lR+++G++q+++A+r+g+ ++tls+ E+  +   s+++l ++++al+  
  EHU00642.1  7 QLANQLKRLRQQQGWTQTDLAKRVGLKQATLSHFENYPE-STSLETLFKILQALDIA 62
                6999***********************************.6*************975 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.4     5e-13   6.4e-10      17      80 .]       6      68 ..       5      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 5e-13
                HHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEEEEEE CS
      HTH_37 17 aqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkveivvk 80
                +qla ++++l+++++++q+++a++ g +q+ +s+ +++  ++ sl++L ++l+al+  + +++k
  EHU00642.1  6 RQLANQLKRLRQQQGWTQTDLAKRVGLKQATLSHFENY-PESTSLETLFKILQALDIALALQIK 68
                589*********************************95.5678**************9999986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0     2e-11   2.6e-08       4      54 ..      12      61 ..       9      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2e-11
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgi 54
                Lk++R + g+tq +la+r+g  ++ +s++En     +s e+l ki++al+i
  EHU00642.1 12 LKRLRQQQGWTQTDLAKRVGLKQATLSHFENYPE-STSLETLFKILQALDI 61
                9*****************************8855.8899*********998 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   7.5e-11   9.6e-08       2      52 ..      12      61 ..      11      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 7.5e-11
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgc 52
                L++l ++ g t+++La+++g+ +atls + +  pe+ sl+tL ki +aL++
  EHU00642.1 12 LKRLRQQQGWTQTDLAKRVGLKQATLSHFENY-PESTSLETLFKILQALDI 61
                899999************************98.8***************97 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.8e-07   0.00061       1      32 [.      11      42 ..      11      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.8e-07
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHC CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEe 32
                +L++ R+++g++  ++ak+  +++++l ++E+
  EHU00642.1 11 QLKRLRQQQGWTQTDLAKRVGLKQATLSHFEN 42
                69**************************9997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-06    0.0033       9      35 ..      12      38 ..       6      40 .. 0.94
   2 ?   -1.6   0.0         2   2.6e+03      22      22 ..      60      60 ..      47      75 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
                HHHHHHSTTEEHHHHHHHHTS-HHHHH CS
        MarR  9 LrilyeqgplsvseLakklgvskstvt 35
                L  l++q++ ++++Lak++g++++t++
  EHU00642.1 12 LKRLRQQQGWTQTDLAKRVGLKQATLS 38
                789**********************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
                H CS
        MarR 22 e 22
                +
  EHU00642.1 60 D 60
                3 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.9e-05     0.024       9      35 ..      12      38 ..      12      40 .. 0.88
   2 ?    1.6   0.1      0.16   2.1e+02       3      12 ..      50      59 ..      49      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
      HTH_24  9 LelLqknprisqreLAerlglSpstvn 35
                L+ L+++ + +q++LA+r+gl ++t++
  EHU00642.1 12 LKRLRQQQGWTQTDLAKRVGLKQATLS 38
                6678899999************99986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
      HTH_24  3 etdrkILelL 12
                et +kIL++L
  EHU00642.1 50 ETLFKILQAL 59
                689*****98 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12   1.6e+02      21      32 ..       3      14 ..       3      17 .. 0.88
   2 ?   12.9   0.0   5.4e-05     0.069      12      38 ..      11      38 ..      10      39 .. 0.87
   3 ?   -2.2   0.0       2.8   3.6e+03      26      37 ..      63      74 ..      61      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
      HTH_38 21 lslreIArrLgr 32
                +s r+ A +L+r
  EHU00642.1  3 YSPRQLANQLKR 14
                799*******99 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.4e-05
      HTH_38 12 eIerll.aeGlslreIArrLgrspsTIs 38
                ++ rl+ ++G+++ + A+r+g +  T s
  EHU00642.1 11 QLKRLRqQQGWTQTDLAKRVGLKQATLS 38
                6789984699**************9988 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.8
      HTH_38 26 IArrLgrspsTI 37
                 A +++  p+T 
  EHU00642.1 63 LALQIKTPPTTL 74
                677888889985 PP

>> Pou  Pou domain - N-terminal to homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8     6e-05     0.077       8      49 ..       7      42 ..       5      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-05
         Pou  8 efakefkqkRiklgltQadvglaLgklygkefSqttIcrFEk 49
                ++a+++k+ R + g tQ+d+++  g      + q t++ FE+
  EHU00642.1  7 QLANQLKRLRQQQGWTQTDLAKRVG------LKQATLSHFEN 42
                89*****************998755......44566666665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.18      11      35 ..      12      38 ..       4      43 .. 0.84
   2 ?   -2.4   0.0       3.5   4.5e+03      37      40 ..      55      58 ..      48      67 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      HTH_23 11 llllae..GlsvreIAreLgvsrrTvy 35
                l+ l++  G+++++ A++ g  + T++
  EHU00642.1 12 LKRLRQqqGWTQTDLAKRVGLKQATLS 38
                55566568**************99987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
      HTH_23 37 wlkr 40
                +l++
  EHU00642.1 55 ILQA 58
                3332 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00036      0.46      12      33 ..      19      40 ..       4      60 .. 0.86
   2 ?   -0.9   0.0       1.2   1.6e+03      18      28 ..      60      71 ..      53      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
  Terminase_5 12 qGyrvaeIAeelglkeatVysW 33
                 qG++ ++ A+ +glk+at   +
   EHU00642.1 19 QGWTQTDLAKRVGLKQATLSHF 40
                 9****************98665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
  Terminase_5 18 eIAeelglk.ea 28
                 +IA +l++k + 
   EHU00642.1 60 DIALALQIKtPP 71
                 799999999555 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0003      0.39      14      36 ..      16      38 ..       7      40 .. 0.87
   2 ?   -0.2   0.1       0.7     9e+02       6      12 ..      53      59 ..      48      76 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
                TTBSS-BHHHHHHHHTS-HHHHH CS
    HTH_IclR 14 eapqeltlselArrtglpkStvh 36
                +++q++t ++lA+r gl  +t +
  EHU00642.1 16 RQQQGWTQTDLAKRVGLKQATLS 38
                57788*************99975 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.7
                HHHHCT- CS
    HTH_IclR  6 laiLdal 12
                + iL+al
  EHU00642.1 53 FKILQAL 59
                5555555 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0004      0.52       3      39 ..       8      38 ..       6      40 .. 0.77
   2 ?   -0.4   0.0      0.91   1.2e+03      33      45 ..      47      59 ..      46      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
                HHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHH CS
   HTH_Crp_2  3 lArfLlrlaeraggeielpltqeelAsmlGltretvs 39
                lA+ L rl+++ +       tq++lA ++Gl + t+s
  EHU00642.1  8 LANQLKRLRQQ-Q-----GWTQTDLAKRVGLKQATLS 38
                66666666554.3.....36***************99 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.91
                SSHHHHHHHHHHH CS
   HTH_Crp_2 33 ltretvsrilseL 45
                ++ et+ +il++L
  EHU00642.1 47 TSLETLFKILQAL 59
                7889999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 673.15
//
Query:       EHU00643.1  [L=130]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-08   34.3   0.0    2.4e-08   34.2   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.2e-08   34.4   0.0    2.6e-08   34.2   0.0    1.1  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    5.1e-06   26.4   0.0    5.9e-06   26.2   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.039   14.1   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.13   12.3   0.0       0.19   11.7   0.0    1.2  1  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   6.6e-12   2.4e-08      44     117 .]      56     123 ..      13     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 6.6e-12
                     EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  44 liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     l G + ++++         i+ l+Vs++ rg GlG +L++a+e+ a  +g++   +  +    +a ++Y+k G+
      EHU00643.1  56 LQGGLAGSIKGR----WLCIDYLWVSEAQRGAGLGGELIRAAEQAAVARGCHSAQV--DTFSFQALPFYQKQGY 123
                     445555555544....78999******************************88555..445677********98 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   7.2e-12   2.6e-08      15      75 ..      61     124 ..      33     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 7.2e-12
                     EEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEETHH..HHHHHHHHTTEE CS
  Acetyltransf_7  15 vGfialslld..aeitrlaVdpeyrgkGiGraLleaae.....kgiile.qlelnae..kaikfYeklGFe 75 
                      G    s+ +   +i +l+V+++ rg G+G +L++aae     +g++ + q+ +     +a++fY+k G++
      EHU00643.1  61 AG----SIKGrwLCIDYLWVSEAQRGAGLGGELIRAAEqaavaRGCH-SaQVDT--FsfQALPFYQKQGYV 124
                     33....33334456777******************733356778986.445555..13499*********7 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.6e-09   5.9e-06      49     107 ..      65     124 ..      19     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.6e-09
  Acetyltransf_10  49 rdgs.hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFk 107
                      + ++  i  l V++++rg G+g +L+ a+e++a  +g + +  v+  + +a pfY+k+G++
       EHU00643.1  65 KGRWlCIDYLWVSEAQRGAGLGGELIRAAEQAAVARGCH-SAQVDTFSfQALPFYQKQGYV 124
                      444467999***********************9999999.99**99999***********7 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.039      26      57 ..      70     101 ..      59     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
  Acetyltransf_CG  26 dfthTeVpeelrGkGiAkkLvkaalddareeg 57 
                       ++   V+e+ rG G++++L++aa + a ++g
       EHU00643.1  70 CIDYLWVSEAQRGAGLGGELIRAAEQAAVARG 101
                      578889******************99999887 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.3e-05      0.19       5      35 ..      69      99 ..      67     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
  Acetyltransf_13  5 cGisriWvssshRrkgiAtkLldaarenfiy 35
                     ++i  +Wvs++ R  g+  +L+ aa +  + 
       EHU00643.1 69 LCIDYLWVSEAQRGAGLGGELIRAAEQAAVA 99
                     67999******************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1097.88
//
Query:       EHU00644.1  [L=697]
Description: xylosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-67  226.5   0.0      7e-67  226.1   0.0    1.1  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    1.9e-48  165.1   0.0    2.7e-48  164.6   0.0    1.2  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   0.0   7.8e-71     7e-67      22     318 ..      62     357 ..      24     357 .. 0.89

  Alignments for each domain:
  == domain 1  score: 226.1 bits;  conditional E-value: 7.8e-71
                    HHHHHHHHH--SEEE--GG..GTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS---S-HHHHHHHT-HHHHHHHHHHHHHHHH CS
  Glyco_hydro_3  22 eaaellkkyqvGgiilfae..nledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegtlfPsalalaatssldlikelgriiakelr 115
                    ++ +    + vG+i+++ +   +   + ++ +++ +r  +e srlgiP+l+  +++ Gl ++    tlfPs+l  ++t+++ l+k +++ i++e+r
     EHU00644.1  62 TILKARLTHGVGQITCPLGthIVDAVTGVRAANRLQRDLVEGSRLGIPALFNEECLVGLLCKGA--TLFPSSLNYGSTWDAGLVKRAAQHIGAEAR 155
                    444444567899999975553677777888889999999********************95544..****************************** PP

                    HHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT..T-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHH. CS
  Glyco_hydro_3 116 algididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga..gvaatvKHFpghGdgavdshkelptvdhseeelrevdlvpfqaai. 208
                     +g ++ +aPv+dv+rd r+g+++++F+edp lv+ +a+a+v+Glqg+  +++at+KH++gh  + +++ ++ + v+    el++  l+pf+ a+ 
     EHU00644.1 156 SVGCKQGLAPVLDVSRDVRWGRTEETFGEDPWLVGVMATAYVEGLQGErrDLLATLKHYAGH--SFSEGARNHAPVHLGFCELNDTFLLPFEMAVk 249
                    ***********************************************999************..*******************************9 PP

                    HTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-....HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHH CS
  Glyco_hydro_3 209 eagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrgg....keeavvlaLkAGvDilLvpeertseikalkkavk 300
                     a+++sVM+a   + ++d++p ++++ lltdvLR+++GFdG++v D+ ++  + +++g     +e ++la +AG+D++L ++++      l++av+
     EHU00644.1 250 LANAGSVMPA---YHDIDNQPSHSDRFLLTDVLREQWGFDGLIVADYGGVSLLHQHHGisqdAAESAALAFNAGLDVELPKDDCA---RHLAEAVS 339
                    9*********...********************************************99988889999****************8...******** PP

                    TTSS-HHHHHHHHHHHHH CS
  Glyco_hydro_3 301 eGeltearidesvrrvlr 318
                       l+++ id+ v r+l+
     EHU00644.1 340 RQLLSMETIDRIVSRILT 357
                    ****************96 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.0     3e-52   2.7e-48       1     204 []     394     652 ..     394     652 .. 0.91

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 3e-52
                      -EEEEEGSS--S-S-STEEEEEESGGGS.SS-SS-BSSS--.........--S---HHHHHHHHHHH........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxx.......................... RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad.etlklGggsgtv.........tvsylvsplegirerles.......................... 58 
                      i+LL+N+ ++LPLk+   ++av+Gp ad   + l g+s  v         ++s++++pl +++++l++                          
       EHU00644.1 394 ITLLENN-GILPLKTG-ARVAVVGPCADdPLALLSGYSFPVhliisdmleETSQVTTPLAAMQHYLGEqqvryakgchiietrtagapvfpgds 485
                      79****8.*****666.5**********4445678899888999999999777899**********99************************** PP

                      ..............-HHHHHHHHHHHTSEEEEEEEES........SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTT CS
                      .............xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  59 .............eegideaveaakeaDvavvvvgedpei.....egEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeen 134
                                   +  ideave+a+++Dv++++vg+   +      gEg+D ++l+lp+ q+ l++a+aa++k+ +vv++ g+p++++   ee+
       EHU00644.1 486 gakpmqqspvsqdTGLIDEAVEVARQSDVVIACVGDLAGLfqsgtVGEGSDTDSLTLPGVQQPLLEALAATGKPLIVVMTGGRPYNLQGL-EER 578
                      ************9889*********************77799999******************************************999.88* PP

                      EEEEEE-S--GCCHHHHHHHHHTTSS---B--SS-EESSSGGG............S-----S.......ETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.......xxxxxxxxx RF
  Glyco_hydro_3_C 135 vkAilaawlpGqegGtaiadvLfGdvnPsGkLpvtfpksledlpddyyeek.dtykfegtpl.......YpeGlglsY 204
                      v+A + aw pGqegG aiadvL+G+++P+G+L v++pk+++ +p  yy++k +   + gtp+       Yp+G+gl++
       EHU00644.1 579 VAAFMLAWAPGQEGGWAIADVLTGRAEPQGRLVVSIPKNVGAMPF-YYNHKlK---SGGTPIafhfgarYPFGFGLGW 652
                      *******************************************88.8888652...4444445555555******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 5763.68
//
Query:       EHU00645.1  [L=459]
Description: putative sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-108  363.0  29.1   1.8e-108  362.8  29.1    1.0  1  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
        6.9    6.6   6.6         31    4.5   0.5    3.7  4  TMIE      TMIE protein


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.8  29.1  2.1e-112  1.8e-108       1     426 [.      14     432 ..      14     433 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.8 bits;  conditional E-value: 2.1e-112
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 +yg+g++a  +++ +++++l++Fytdv+gl+aa +g+++lv+rl Da++Dp +G+l+d+t+tr Gr+rPwl+  ai+++vs++  f++p+++++ak+++
  EHU00645.1  14 GYGIGDAASSMVWQTATLFLAYFYTDVFGLPAAIMGTMFLVVRLADAFVDPCIGALVDRTRTRHGRFRPWLMWFAIPFGVSCLITFYVPDAGPTAKIVY 112
                 6************************************************************************************************** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 ++vty +l   y+++++py+++  +lt d+ eR sl+s+r+ ++ +gg++++++  +lv  lg+ +++++gyl+++ ++  L +++++ +++ t+er  
  EHU00645.1 113 ACVTYAILSFIYSAVNVPYCAMPGALTLDPRERHSLQSWRFACAFIGGLVVTVIGLPLVELLGQ-GDKAEGYLYAMGLMGFLGVVLIYCCFFMTRER-- 208
                 ****************************************************************.********************************.. PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgal 297
                     + + +++++s++ +lk + +n +++i++++ +l ++a++ + +  lYy++yvl+  + + +f ++ +i+al g++l  ++  ++++ ++y ++++
  EHU00645.1 209 ----YLPHNDTAGSMWSDLKLLAKNNQWRIIIIFNILLLTAVVTRGSSPLYYMNYVLRRPDLVFTFIVTGMIAALCGAFLSERILGKFDRIRAYQVCLV 303
                 ....3589******************************************************************************************* PP

       MFS_2 298 ltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqspq 396
                 + +++l++++l++ps+++l + l +++gf   + + + w m++dvvDy e ++G+r +g++f++ +f+ k++ + g++v+g++L++++y+ + ++qspq
  EHU00645.1 304 SFVFFLTVIYLIPPSQVWLIIGLNIVFGFVQNLTTPVQWNMFSDVVDYEEHRSGRRLDGLVFSTALFAIKFGLAMGGAVVGWILGLVHYQPGVAAQSPQ 402
                 *************************************************************************************************** PP

       MFS_2 397 vvlalrllyavlpavlllvallllvrypln 426
                 v+++++l+  ++p+vl++++llll++y+ln
  EHU00645.1 403 VITTINLMHNIIPGVLFIAMLLLLFFYQLN 432
                 *****************************9 PP

>> TMIE  TMIE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.5    0.0035        31      16      36 ..     186     206 ..     183     208 .. 0.84
   2 ?    3.2   0.1    0.0087        78       8      28 ..     228     248 ..     221     250 .. 0.83
   3 ?   -2.0   0.1      0.37   3.3e+03       8      26 ..     294     312 ..     291     316 .. 0.77
   4 ?   -3.4   0.0      0.99   8.8e+03      20      52 ..     416     448 ..     410     454 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0035
        TMIE  16 aivllvvlaivillCCvirfR 36 
                 a+ l+ +l +v++ CC++  R
  EHU00645.1 186 AMGLMGFLGVVLIYCCFFMTR 206
                 56678899*********9877 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0087
        TMIE   8 glrvWhviaivllvvlaivil 28 
                 +   W++i+i+ + +l+ v++
  EHU00645.1 228 KNNQWRIIIIFNILLLTAVVT 248
                 5567*************9997 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.37
        TMIE   8 glrvWhviaivllvvlaiv 26 
                  +r ++v  + ++++l+++
  EHU00645.1 294 RIRAYQVCLVSFVFFLTVI 312
                 6788999998888888887 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 0.99
        TMIE  20 lvvlaivillCCvirfRiPRTkqeIeadyarkk 52 
                 +v+++ ++ll  + ++  PR     ea +a++ 
  EHU00645.1 416 GVLFIAMLLLLFFYQLNSPRVNAIAEALAAKRA 448
                 566666666666777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3378.51
//
Query:       EHU00646.1  [L=210]
Description: N-3-oxohexanoyl/oxooctanoyl-L-homoserine lactone synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-54  184.0   0.0    2.1e-54  183.8   0.0    1.0  1  Autoind_synth  Autoinducer synthase


Domain annotation for each model (and alignments):
>> Autoind_synth  Autoinducer synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   1.2e-58   2.1e-54       3     182 ..      10     185 ..       8     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 1.2e-58
  Autoind_synth   3 slrseaklkelfrLRkevFkdRLeWdvqiidGmerDqyDnlkttyllgvkdegrvigsvRlletkgPnmltdtFsslldgeniaesanllessRFf 98 
                    ++++ + ++el++LRk++F+dRL+W+v +++Gme D++D   t y+lg+ + g++++svR+     Pnm+t+tF + +   ++++ +   essRFf
     EHU00646.1  10 EELQTTRSEELYKLRKKTFSDRLGWEVICSQGMESDEFDGPGTRYILGICE-GQLVCSVRFTSLDRPNMITHTFQHCFSDVTLPAYG--TESSRFF 102
                    57788999*******************************************.*********************************66..5****** PP

  Autoind_synth  99 vDkdlvsdraasslalvtltlflgiieyarkagydeivtivdlvmeriLkRsGwpisvvgeplsekkekvllallpaddesvea 182
                    vDk +++ +++ ++++++  lfl+++++a+++ y +i+tiv+  m++iL RsGw+i+v++e+   +ke+++l++lpa ++ +++
     EHU00646.1 103 VDKARARALLG-EHYPISQVLFLAMVNWAQNNAYGNIYTIVSRAMLKILTRSGWQIKVIKEAFLTEKERIYLLTLPAGQDDKQQ 185
                    ***********.9****************************************************************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1531.84
//
Query:       EHU00647.1  [L=249]
Description: Quorum-sensing transcriptional activator EsaR [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-27   95.5   0.0    2.7e-27   95.1   0.0    1.1  1  Autoind_bind  Autoinducer binding domain
      3e-15   55.5   0.1    5.8e-15   54.6   0.1    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    2.2e-06   27.3   0.0    3.9e-06   26.4   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
    0.00033   20.1   0.0    0.00065   19.2   0.0    1.5  1  Sigma70_r4    Sigma-70, region 4
    0.00056   19.4   0.0     0.0011   18.4   0.0    1.5  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0022   18.1   0.1      0.016   15.4   0.0    2.2  2  HTH_28        Helix-turn-helix domain
     0.0041   16.9   0.6      0.012   15.4   0.0    2.0  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.037   13.8   0.0    1.7  1  HTH_10        HTH DNA binding domain
      0.058   13.3   0.0       0.12   12.2   0.0    1.4  1  HTH_5         Bacterial regulatory protein, arsR family
      0.069   12.9   0.4        7.8    6.3   0.0    2.3  2  GP57          Phage Tail fiber assembly helper gene product 5


Domain annotation for each model (and alignments):
>> Autoind_bind  Autoinducer binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   1.5e-30   2.7e-27       3     148 ..      13     157 ..      12     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 1.5e-30
                   HHHHHHHHHHHHHTTCSEEEEEEEETTSCESCEEEEEESS-HHHHHHHHHTTGGGT-HHHHHHHHCSSEEEEECGGCCCCCSHHHHHHHHHHHHTT- CS
  Autoind_bind   3 eelfdlltrlaaalGfdrfaygarapskdsaedvlllsnyPaeWlerYveegylaiDPvvreaarssspfvWsddllaaelspaarrfldeardfGl 99 
                   ++l  +++r ++ lG + +ay+  + sk+++++vl++s+yP+eW + Y++++++  DPv+  a++++spf W++    ++ + +  ++++  +++++
    EHU00647.1  13 DTLQTYIQRKLSPLGSPDYAYT--VVSKKNPSNVLIISSYPDEWIRLYRANNFQLTDPVILTAFKRTSPFAWDENITLMS-DLRFTKIFSLSKQYNI 106
                   67888999**************..******************************************************76.68888*********** PP

                   SEEEEEEEEETTSSEEEEEEEESSSSCCHHHHHH..HHHHHHHHHHHHHHH CS
  Autoind_bind 100 rsGltvpvhgprgrlaalslageerdldaaeaae..ararlqllalhaher 148
                   ++G+t+ +h++ ++la+ls++ ++ d++a e++   ++  +q+l + + e+
    EHU00647.1 107 VNGFTYVLHDHMNNLALLSVIIKGNDQTALEQRLaaEQGTMQMLLIDFNEQ 157
                   ********************9999999999988889999999999988775 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1   3.3e-18   5.8e-15       2      56 ..     180     234 ..     179     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 3.3e-18
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 ++s+RE evL +   Gk+  eIA++ +iS  TVk+h++n+  KL+v +  +++rl
  EHU00647.1 180 IFSSRENEVLYWASMGKTYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRL 234
                 589*************************************************985 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.2e-09   3.9e-06      26      51 ..     195     220 ..     182     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2.2e-09
                   ---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrlsRAr 51 
                   g++y+EIA+++gis++tVk +++   
    EHU00647.1 195 GKTYAEIAAITGISVSTVKFHIKNVV 220
                   99*******************98655 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.6e-07   0.00065       8      48 ..     184     223 ..     181     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.6e-07
                 HHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   8 rerevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 re evl+     g T++EI+++ giS ++V+ ++k+ + kL
  EHU00647.1 184 RENEVLYWASM-GKTYAEIAAITGISVSTVKFHIKNVVVKL 223
                 56666655554.55*****************9999988887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.4e-07    0.0011      19      40 ..     197     218 ..     195     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.4e-07
      HTH_24  19 sqreLAerlglSpstvnrrlkr 40 
                 +++e+A  +g+S+stv+ ++k+
  EHU00647.1 197 TYAEIAAITGISVSTVKFHIKN 218
                 89******************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.69   1.2e+03      32      38 ..      54      60 ..      52      66 .. 0.86
   2 !   15.4   0.0   8.6e-06     0.016       7      34 ..     189     217 ..     187     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.69
      HTH_28 32 Wikryee 38
                Wi+ y++
  EHU00647.1 54 WIRLYRA 60
                *****98 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 8.6e-06
      HTH_28   7 klla.aGhsvreaArelgisrrtvyrWik 34 
                 +++a  G++++e+A++ gis +tv+  ik
  EHU00647.1 189 LYWAsMGKTYAEIAAITGISVSTVKFHIK 217
                 56663699****************98776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         7   1.3e+04      37      43 ..      54      60 ..      53      65 .. 0.75
   2 !   15.4   0.0   6.5e-06     0.012      16      35 ..     193     213 ..     187     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7
      HTH_23 37 wlkryre 43
                w++ yr+
  EHU00647.1 54 WIRLYRA 60
                8888875 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.5e-06
      HTH_23  16 e.GlsvreIAreLgvsrrTvy 35 
                   G++++eIA++ g+s +Tv 
  EHU00647.1 193 SmGKTYAEIAAITGISVSTVK 213
                 369****************96 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.1e-05     0.037      25      51 ..     197     223 ..     194     224 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.1e-05
      HTH_10  25 tlkeLAkelGIskstlsehLrkaeskl 51 
                 t +e+A + GIs st++ h++++  kl
  EHU00647.1 197 TYAEIAAITGISVSTVKFHIKNVVVKL 223
                 679******************998876 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-05      0.12      18      37 ..     198     217 ..     195     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
                 HHHHHHHHTS-HHHHHHHHH CS
       HTH_5  18 vcelaeelglsqstvShHLk 37 
                   e+a+++g+s stv  H k
  EHU00647.1 198 YAEIAAITGISVSTVKFHIK 217
                 579***************87 PP

>> GP57  Phage Tail fiber assembly helper gene product 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0043       7.8       5      32 ..     135     162 ..     131     168 .. 0.88
   2 ?    4.4   0.1     0.017        30      41      59 ..     197     215 ..     191     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0043
        GP57   5 tveqklsaeivtlksrildtqdqaarlm 32 
                 ++eq+l+ae  t++  ++d ++q  rl 
  EHU00647.1 135 ALEQRLAAEQGTMQMLLIDFNEQMYRLA 162
                 47*********************99985 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.017
        GP57  41 tlaeiaravGitGdtikve 59 
                 t aeia   Gi+  t+k  
  EHU00647.1 197 TYAEIAAITGISVSTVKFH 215
                 89**************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1862.49
//
Query:       EHU00648.1  [L=297]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-58  196.7   0.0    4.9e-58  196.5   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.2e-48  164.3   0.0    2.6e-48  164.1   0.0    1.0  1  adh_short     short chain dehydrogenase
    5.6e-09   36.2   0.0    7.5e-09   35.7   0.0    1.1  1  KR            KR domain
  ------ inclusion threshold ------
      0.044   13.2   0.1      0.063   12.7   0.1    1.2  1  PALP          Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   0.0   1.1e-61   4.9e-58       4     232 ..      62     293 ..      57     295 .. 0.96

  Alignments for each domain:
  == domain 1  score: 196.5 bits;  conditional E-value: 1.1e-61
                   TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   sgIGra+A a+a+eGa+v++ +l ee+  +++v +l e+ g++ v ++ D ++e+ +++lv+e+++k+g+lDilvnnag  +  ++++l++s e+fd
    EHU00648.1  62 SGIGRAVAIAYAREGADVAINYLPEEEsdAAEVIKLIEAEGRKaVaIPGDLRSEAFCQKLVNEAADKLGGLDILVNNAGRQQF-NESILTLSTEDFD 157
                   8*************************97767777777777766457************************************9.************* PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                    ++++n+y+ f l+kaal ++ +g++i+n+ssv+a +  +    y+ +Ka  +a+t++lA++lgp+giRvNav+pgp  T+++ +  + +e  e++ 
    EHU00648.1 158 ATFKTNVYAPFWLTKAALAHLPRGAAIINTSSVQAFKPSDILLDYAQTKACNVAFTKALAKQLGPEGIRVNAVAPGPYWTPLQPSGGQPQEKVEQFG 254
                   **********************************************************************************9999999******** PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   a aplgr g+p e+a +++ Lasde s+ +Gq+   DgG
    EHU00648.1 255 ADAPLGRPGQPVEIAPLYVTLASDECSFASGQVWCSDGG 293
                   *************************************** PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.0   5.8e-52   2.6e-48       2     188 ..      54     241 ..      53     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 5.8e-52
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCS CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsels 97 
                  +l+tG++sGIGra+a ++a+eGa+v++  + ++e++++ev+k +++eg+ka+ai++D+++++ +++lv++a++klg+ld+LvnNAG  + ++++  ls
  EHU00648.1  54 KALITGGDSGIGRAVAIAYAREGADVAInyLPEEESDAAEVIKLIEAEGRKAVAIPGDLRSEAFCQKLVNEAADKLGGLDILVNNAGRqQFNESILTLS 152
                 69**************************977888999***************************************************666788999** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                  e++++++++N+ ++f+lt+a+l ++   ++++I+n+sSv++++p+  +  Y+ +Ka  +++t++lak+l p+girvnavaPG+  T+++ 
  EHU00648.1 153 TEDFDATFKTNVYAPFWLTKAALAHLP--RGAAIINTSSVQAFKPSDILLDYAQTKACNVAFTKALAKQLGPEGIRVNAVAPGPYWTPLQP 241
                 *************************87..999****************************************************9999875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.7e-12   7.5e-09       4     165 ..      56     218 ..      54     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.7e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklleemt 101
                 litGG  g+G+++a   a++ga   +    +  +++d+++ i+ +ea g +  +++ D+ +++  ++l++e+ ++ + +   ++ Ag  + ++ + +++
  EHU00648.1  56 LITGGDSGIGRAVAIAYAREGADVAINYLPE--EESDAAEVIKLIEAEGRKAVAIPGDLRSEAFCQKLVNEAADKLGGLDILVNNAGRQQfNESILTLS 152
                 9********************9877777666..6788889************************************************996789***** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 +ed+++ ++  v +   L ++      +   ++ +SS+ ++  s    +Ya + a+  a+ +  ++
  EHU00648.1 153 TEDFDATFKTNVYAPFWLTKAALAhlPRGAAIINTSSVQAFKPSDILLDYAQTKACNVAFTKALAK 218
                 **************9999888776556678899999999999999999999887766665554433 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.063      53     113 ..      51     114 ..      38     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
                 TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEE.EEETTS-..HHHHHHHHHTT-EEEEECCHHHH CS
        PALP  53 tgaktvveassGNhgralAaaaallGlkvti.vvpadas..pekvallrllGaevvevggdyde 113
                 tg+k +++++++  gra+A+a a+ G +v i ++p+  s  +e ++l+++ G + v ++gd  +
  EHU00648.1  51 TGRKALITGGDSGIGRAVAIAYAREGADVAInYLPEEESdaAEVIKLIEAEGRKAVAIPGDLRS 114
                 78999**********************887747999999778****************998433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2295.96
//
Query:       EHU00649.1  [L=380]
Description: beta-lactamase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-70  237.1   2.7    3.8e-70  236.7   2.7    1.0  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.7   2.7   2.1e-74   3.8e-70       2     325 ..      31     373 ..      30     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 236.7 bits;  conditional E-value: 2.1e-74
                     HHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTCTTGGGTTEBH CS
  Beta-lactamase   2 drlvrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTl 96 
                     ++++++lmaq+gipG++v+v+ +g++ + +  Gvad ++ r vt++tlf+++Sv+Ktft++++  l++ G+l+L+dpVs+y+P++ gp++++  +
      EHU00649.1  31 KSVIDPLMAQQGIPGMSVGVLYKGRPQYINF-GVADTASDRRVTENTLFELGSVSKTFTGVLAGVLIRNGALRLNDPVSRYWPALNGPQWQSRWM 124
                     6789**********************97777.9************************************************************** PP

                     HHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGG CS
  Beta-lactamase  97 rdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdp 191
                      +L+t+++G  +l  +d++++++    ell++ ++++p+ apGt++ Ys +++gllg+l+  v+g  +e+++++ +++pL ++ t +++p+s ++
      EHU00649.1 125 VHLATYSAGGLPLHLPDEVTSQD----ELLAYAQQWQPDAAPGTQRHYSHVSIGLLGYLM--VKG-EFEEAMQKDVITPLRLTRTFYTVPPSMMF 212
                     **********9999999999998....*******************************76..566.7**************************** PP

                     GBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHH.HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH..... CS
  Beta-lactamase 192 rdaagytgngpearappanlpaeaegagglistardlarfl.glalegglllsaetlaqltaklssgttrpagiraglglGwvladktga..... 280
                      +a+gy ++g+++r++p++l+ae     g++stard+++f+   a+ +gl ++ ++l+  +  ++s++ r +   +  glGw +++ + +     
      EHU00649.1 213 DYAWGY-QDGKPVRVSPGMLSAETS---GVKSTARDMMAFMqANANPNGLSSGNTALRNGILTAQSRYLRAGELYQ--GLGWEIYPWPIDsqtiv 301
                     ******.99**************98...*************54445555555555666666666666666666666..67999999999999999 PP

                     .........................TEEEEEEE..STEEEEEEEECGGTEEEEEEESBCSSHHHHHHHHHHH CS
  Beta-lactamase 281 .........................pgtfghtG..ggygtyvfvdpeanlvvavltnrdppnedaaedarli 325
                                              ++++++tG   g+g+y++++p++n +v++l+n+++pn+++ ++a +i
      EHU00649.1 302 tasdtqaalstqpatilspaqpmdrASWVHKTGstKGFGAYIAFVPQQNSGVILLANKNYPNPERIKAAVAI 373
                     ***************************************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2813.38
//
Query:       EHU00650.1  [L=393]
Description: glycosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-10   39.4   0.0    8.7e-10   38.4   0.0    1.5  1  Glycos_transf_1  Glycosyl transferases group 1
    2.6e-09   37.6   0.0    5.9e-09   36.4   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   9.7e-14   8.7e-10       7     145 ..     159     312 ..     154     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 9.7e-14
                      HHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC...HCSCEEEEEES............STTHHHHHHHHHHHCTTCGGGEEECCH.SSS CS
  Glycos_transf_1   7 kklgknekkkiilsvgrlekeKgvdllikafallkkq...lnpnvklviaG...........ngeeekelkklaeelelsdnviflgevs.red 85 
                      +k + +++k  +++vg+  ++Kg + ++ a+ +l ++      ++ + ++G             ++++ + + +e +  ++ ++ +   + + +
       EHU00650.1 159 QKRPRQSDKLRLVFVGNEFYRKGGAEVVLAISELIETgqiDAGQLDVQLIGeltkrhnvahrAFQDNDAFYRDIEDRITRHACFTHHSRKdNRE 252
                      667778899999999999999**********9999989888899999999*******999997888899999999999999999999999999* PP

                      HHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT.-H CS
  Glycos_transf_1  86 leellknadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpn.na 145
                      l++l++++d+ +lp   E  G ++lE  a+g+pv++sn+  ++e+  +   G+l++ + n+
       EHU00650.1 253 LMQLFQQSDVGLLPTWQETYGFSVLEMQASGCPVLTSNVRALPEINPPTA-GWLIDGElND 312
                      **************888*****************************9999.****998654 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   6.6e-13   5.9e-09       3     118 ..     169     308 ..     167     319 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 6.6e-13
                      EEEEES---GG.GTHHHHHHHH.HHHH.H...H...EEEEEES---.................HHHHHHHT.T-T.TEEEE---....THHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleav.pllrkk...d...vrlvivGdgp.rp..............eeleelaa.gleerveftGfv....edlael 69 
                      +++fvG+    +kg   ++ a+ +l+      d   + + ++G+ + r+              +++    + +++ +  ft +      +l +l
       EHU00650.1 169 RLVFVGNE-FYRKGGAEVVLAIsELIE-TgqiDagqLDVQLIGELTkRHnvahrafqdndafyRDI----EdRITRHACFTHHSrkdnRELMQL 256
                      78999987.344777777777735555.33333567999999965432234443332222122222....2344455666666665544599** PP

                      HHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--.TTSSEE--T CS
  Glyco_trans_1_4  70 laaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv.gengllvpp 118
                      ++++dv ++P+  e+ g ++lE+ a+g+pv +++v +++e+   ++g+l++ 
       EHU00650.1 257 FQQSDVGLLPTwqETYGFSVLEMQASGCPVLTSNVRALPEINpPTAGWLIDG 308
                      ************99**************************778899999963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3089.23
//
Query:       EHU00651.1  [L=385]
Description: salicylate hydroxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-32  110.9   0.0    8.7e-32  110.7   0.0    1.0  1  FAD_binding_3   FAD binding domain
    1.3e-05   24.5   0.4    2.2e-05   23.7   0.4    1.3  1  GIDA            Glucose inhibited division protein A
    1.6e-05   25.1   0.1    5.3e-05   23.4   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    4.7e-05   22.7   0.7    9.9e-05   21.6   0.7    1.5  1  FAD_binding_2   FAD binding domain
    5.6e-05   22.5   0.4    0.00087   18.6   0.3    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      7e-05   21.9   2.2      0.037   12.9   0.4    2.6  3  Trp_halogenase  Tryptophan halogenase
    0.00069   19.0   0.1       0.85    8.8   0.0    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0026   16.5   0.4      0.013   14.2   0.4    1.9  2  HI0933_like     HI0933-like protein
     0.0049   16.2   0.1       0.26   10.5   0.1    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
        0.1   12.2   1.2       0.19   11.3   0.4    1.8  2  DAO             FAD dependent oxidoreductase
        0.1   11.6   0.0       0.17   10.9   0.0    1.3  1  SE              Squalene epoxidase
       0.12   11.7   0.9        0.2   10.9   0.9    1.4  1  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   5.8e-35   8.7e-32       3     346 ..       2     338 ..       1     341 [. 0.83

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 5.8e-35
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.CCCCCEEEEEHH..CHHC CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne.lsdtpkaradle..less 95 
                    + +++G+G  G+++al L ++G ++ + e  +t  + + a  + +  +  l++lGl+d+++a g    +m+++ y++ ls+    r  l+  +++ 
     EHU00651.1   2 KAIVIGGGMGGMTAALALEQQGFQTEVYEAVKTIRPVGAAISVWPNGVKCLNSLGLKDKVRALG---GNMAFMAYKDaLSGETLTRFSLSplVQQV 94 
                    578*************************************************************...555666666645555677777777789** PP

                    ST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHH.TGGEEEEEEEEEEEEEE CS
  FAD_binding_3  96 pervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktl.giefegeetvyeagvld 189
                    +e ++ +   el+ +L+++    g  +v+f+++++ +eq+ +gv a++ d+++ e      ++lv+aDG +S vr+ + g +++       ag ++
     EHU00651.1  95 GEFPYPIARAELQAMLLDA---YGrDRVHFGKRIVQVEQHATGVVATFEDNSQAEG-----DFLVAADGTHSVVRDYVlGEKLPRRY----AGYVN 178
                    ******************9...67789**********************9975555.....**************986154455444....44555 PP

                    EEEEC-SCCCTTC...CEEEEECCTTEEEEEECCETEEEEE..EEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEE.EEES CS
  FAD_binding_3 190 vlfdadlsdivep...lvlilsaesrgvmviPlentlerfy..vqvearaekeersekfteeevkarlreivgektldveieevsawtvaq.rvae 279
                     +  +++++  +p   ++    + +r+  ++P++ ++  f   v ++a+ e+++++ + + +++   + + v++  +  +++ ++++++++    +
     EHU00651.1 179 WNGLVNIDESIAPadqWTTFVGDGKRV-SLMPVSGNRFYFFfdVPLPAGLEQDRTTARDDLRRYFSGWAAPVQKLIAAIDVDTTNRVDIHDiEPFQ 273
                    444445544444454455555666664.788888844444411345566777777888888999*************************993468* PP

                    SSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHH CS
  FAD_binding_3 280 kyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavv 346
                    ++ kgrv l GDAaH ++P  GqG   a++Da+ La++Laa+    + e+ L  Y+++r ++++++v
     EHU00651.1 274 RFVKGRVVLLGDAAHSTTPDIGQGGCAAMEDAIVLASALAAHSL--GIEDALLRYQARRVDRVKDLV 338
                    ******************************************99..789999*********999987 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.4   1.5e-08   2.2e-05       2      72 ..       3      77 ..       2      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.5e-08
                EEEE-SSHHHHHHHHHHHHTT--EEEE....ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi....thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagi 72
                 iViGgG+ G+ AAla+ + G+++  +    t +    a  +  + ++ + +  l+  ++algg ++ +a k ++
  EHU00651.1  3 AIVIGGGMGGMTAALALEQQGFQTEVYeavkTIRPVGAAISVWPNGVKCLNSLGLKDKVRALGGNMAFMAYKDAL 77
                69*************************7655444444445556667777788899***********999988776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   3.6e-08   5.3e-05       1      27 [.       5      31 ..       5      47 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.6e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   ++G+G++G++aA +L ++gf+ +++e+
     EHU00651.1  5 VIGGGMGGMTAALALEQQGFQTEVYEA 31
                   8************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.7   6.6e-08   9.9e-05       2      33 ..       3      34 ..       2      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.6e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   +iViG+G++G++AAl++ ++G ++ v e ++ 
     EHU00651.1  3 AIVIGGGMGGMTAALALEQQGFQTEVYEAVKT 34
                   69*********************999988765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   5.8e-07   0.00087       2      35 ..       2      35 ..       1      77 [. 0.84
   2 ?    1.6   0.0     0.089   1.3e+02     199     238 ..     118     157 ..      81     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.8e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtc 35
                 + +viGgG++G++aal l q+g+++ ++e+ +t+
   EHU00651.1  2 KAIVIGGGMGGMTAALALEQQGFQTEVYEAVKTI 35
                 679**********************999855554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.089
                  EEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 199 evklgtsvkeidgngeklevvledgeeidadlvvvavGvr 238
                  +v++g+++++++++ + +  + ed+++ + d +v a G  
   EHU00651.1 118 RVHFGKRIVQVEQHATGVVATFEDNSQAEGDFLVAADGTH 157
                  5788899999*9999988899999999*******999976 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.4   2.5e-05     0.037       3      65 ..       4      62 ..       2      71 .. 0.82
   2 !    7.7   0.1   0.00094       1.4     145     221 ..      95     168 ..      68     196 .. 0.76
   3 ?   -1.2   0.0      0.46   6.9e+02     310     365 ..     272     328 ..     229     343 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
                    EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-.SSS---SS-EE--THHHHTHHHHT--HHHHCH CS
  Trp_halogenase  3 vivGGGtaGwlaAaalakalkgklevtlves.eeigtvgvGeatipsirkllrlLgideeeflr 65
                    +++GGG  G +aA al++++   ++ ++ e+ ++i +vg   +  p+ +k+l++Lg++++  +r
      EHU00651.1  4 IVIGGGMGGMTAALALEQQG---FQTEVYEAvKTIRPVGAAISVWPNGVKCLNSLGLKDK--VR 62
                    79*****************9...566666652578888888899*************998..55 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00094
                     S--EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT--- CS
  Trp_halogenase 145 lsyAyhldaalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaLktg 221
                      ++ y + +a+++ +L +   ++ v +   ++v+v+++++g v+ ++  d  + e+d+ + + G  + + + +L ++
      EHU00651.1  95 GEFPYPIARAELQAMLLDAYGRDRV-HFGKRIVQVEQHATGVVATFE--DNSQAEGDFLVAADGTHSVVRDYVLGEK 168
                     5677777777777777765555555.5567899**********9876..57778************99998888764 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.46
                     ES-SEETTEEE-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--.HHHHHHHHH CS
  Trp_halogenase 310 rkqawvknvvalGlasgfvePlestsihliqaalrrLlallpdksde.paaiaefnr 365
                      +++ +  vv+lG+a+ +  P  +++   +++++  L++ l+++s   + a+ ++ +
      EHU00651.1 272 FQRFVKGRVVLLGDAAHSTTPDIGQGGCAAMEDAIVLASALAAHSLGiEDALLRYQA 328
                     678888899999999999999888888888888888888888776654445555554 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00099       1.5       1      22 [.      10      31 ..      10      35 .. 0.93
   2 !    8.8   0.0   0.00057      0.85     221     259 ..     115     153 ..      79     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00099
                   HHHHHHHHHHHHTTEEEEEEES CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEa 22
                   + G++aA  L ++Gf++ v+Ea
     EHU00651.1 10 MGGMTAALALEQQGFQTEVYEA 31
                   78*******************9 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00057
                    TTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE- CS
  Amino_oxidase 221 rgldirlntrVkeikregdgvtvtledgevveaDaVvvT 259
                    +++++++++r  ++++++ gv  t+ed ++ e+D  v +
     EHU00651.1 115 GRDRVHFGKRIVQVEQHATGVVATFEDNSQAEGDFLVAA 153
                    5689******************************98765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   8.9e-06     0.013       2      34 ..       2      34 ..       1      37 [. 0.92
   2 ?   -0.4   0.0      0.24   3.5e+02     125     167 ..     118     159 ..      98     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.9e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34
                 + iviGgG  G+ aA++++++g ++ ++e+ k+
   EHU00651.1  2 KAIVIGGGMGGMTAALALEQQGFQTEVYEAVKT 34
                 689**************************9876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.24
                  EEE-S--EEEEECETTE.EEEEE..TTEEEEESEEEE----SS- CS
  HI0933_like 125 klrletevksvekeedgkfrvkt.kseeeleadklvlAtGGlSi 167
                  +++  +++ +ve++++g   v+t +++++ e d lv A G  S+
   EHU00651.1 118 RVHFGKRIVQVEQHATG--VVATfEDNSQAEGDFLVAADGTHSV 159
                  46778899999888888..44444899*************9997 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00017      0.26       1      46 [.       4      52 ..       4      85 .. 0.75
   2 ?    3.5   0.0     0.023        34     215     269 ..     103     158 ..      96     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg....nignsiyrypkemtfi 46
                 i+iG+G  G++aa++l++ g++   + E       +g++i+ +p+  + +
   EHU00651.1  4 IVIGGGMGGMTAALALEQQGFQ-TEVYEAVktirPVGAAISVWPNGVKCL 52
                 89******************95.667776421234677888888766665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.023
  Pyr_redox_3 215 enrleelvke..ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykp 269
                  + +l++++    ++ +v+f +++ +++++ + +  ++ed+++  + d+ v+a G ++
   EHU00651.1 103 RAELQAMLLDayGRDRVHFGKRIVQVEQHATGVVATFEDNSQA-EGDFLVAADGTHS 158
                  55555555555555689**********************7664.5588888899887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00013      0.19       2      28 ..       3      31 ..       2      40 .. 0.88
   2 ?   -1.2   0.0      0.77   1.2e+03     163     207 ..     119     160 ..     105     288 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                EEEECTSHHHHHHHHHHHHTT..EEEEES CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllek 28
                 ++iGGG+ G+++A++L ++g  + ++e+
  EHU00651.1  3 AIVIGGGMGGMTAALALEQQGfqTEVYEA 31
                58***************999988777775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.77
                 EEESECEEEEEEEETCEEEEEEECT.EEEE..EEEEEEE--GGGHHHH CS
         DAO 163 ilegtevtgleeedgkvwgverttp.gend..aadavVnaaGawsdll 207
                 +++g +++ +e++   ++gv   +  + n+  + d +V a G +s  +
  EHU00651.1 119 VHFGKRIVQVEQH---ATGVV--ATfEDNSqaEGDFLVAADGTHS-VV 160
                 5666667777665...34442..1112221112344777777665.22 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.17     105     167 ..     252     315 ..     232     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
          SE 105 fkkaleegklrsmpnkflpasknekkG.lillGDalnmRHPltggGmtvalnDivllskllkpl 167
                 + +a++ ++   +  + +++ +  +kG ++llGDa     P +g G   a++D+++l+  l   
  EHU00651.1 252 LIAAIDVDTTNRVDIHDIEPFQRFVKGrVVLLGDAAHSTTPDIGQGGCAAMEDAIVLASALAAH 315
                 56777777777777778888888888857889*************************9998765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   0.00014       0.2       3      27 ..       4      28 ..       3      35 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
  FAD_oxidored  3 vVvGGgpaGvaAAiaAaraGakvlL 27
                  +V+GGg++G++AA+a  ++G ++ +
    EHU00651.1  4 IVIGGGMGGMTAALALEQQGFQTEV 28
                  7*******************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2704.25
//
Query:       EHU00652.1  [L=680]
Description: dipeptidyl carboxypeptidase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-133  446.7   1.1   1.3e-133  446.7   0.1    1.5  2  Peptidase_M3  Peptidase family M3
  ------ inclusion threshold ------
      0.091   12.8   0.1        2.3    8.3   0.1    3.0  3  DUF2680       Protein of unknown function (DUF2680)


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.49   4.4e+03      59      92 ..     144     175 ..     113     184 .. 0.52
   2 !  446.7   0.1  1.4e-137  1.3e-133       2     457 ..     229     677 ..     228     678 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.49
                   HTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3  59 ledkmaknpetvldfleelvkklrpllekelkll 92 
                   l+   a+ pe+ ++ l++l ++++ l  + +++l
    EHU00652.1 144 LAG--ANLPEAQKQQLKTLNQEAARLSTQFTNKL 175
                   333..55555555555555555555555544444 PP

  == domain 2  score: 446.7 bits;  conditional E-value: 1.4e-137
                   HHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   2 lkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkk 98 
                   l++ + r++R++++ a  ++ ++++ ++++++l  +l + rae+A+llg+ s+a+++l+d+mak+pe++l f++++v ++r  +e+e +++++ ++k
    EHU00652.1 229 LQSLTVRATRQALFHAALTRSEKND-DNDTRQLVLRLSQVRAEQARLLGFASFATWQLQDQMAKTPEAALAFMRNIVPAARARAEREAAAIQQTIDK 324
                   677889**************77655.6779******************************************************************* PP

                   CCT-SSS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHH.CHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEEEC- CS
  Peptidase_M3  99 elglegelqpwDvaYYsekqreekydldqeelkeyfpletvle.GllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylDlye 194
                   ++g++  l +wD+++Y+e++r+++ydld++++k+yf+l+tvle G ++ + +L+Gi+f +++d   +v+h+dV+++e++d+   +gl + +y+D+++
    EHU00652.1 325 QQGDF-ILSAWDWNFYAEQVRRAQYDLDENQIKPYFELNTVLEqGFFWAATQLYGITFAQRHDL--PVYHPDVQVYEIFDA-DGSGL-ALFYTDFFK 416
                   *****.************************************99********************..***************.66666.********* PP

                   -TTS-SS-EEEEEE--B..TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT-S-CCCCCHHHHHHHHGGGS CS
  Peptidase_M3 195 rkgKrggAasfglvksr..edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgtnvpidfvElpSqlmEnllte 289
                   r++K ggA+++++v+++       ++pviy ++N+t+p++ +P+LL++dev tLfHEfGH++H l+++++y+++sgt +p+dfvE+pSq++E+++ e
    EHU00652.1 417 RDSKGGGAWMSNFVNQStlL---DSKPVIYNVCNYTQPAEREPALLSWDEVITLFHEFGHTLHGLFASQRYPSLSGTATPRDFVEFPSQINEHWASE 510
                   ***************96441...368*********************************************************************** PP

                   HHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHH.HHHHHHHCTTSCTTBTTSSGGGC-CCCHTS CS
  Peptidase_M3 290 pevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlle.tyaelrkkflglpvapdeasqasFghlfah 385
                   p+v + +++hy+tge++p+el ek+i+a ++n+++e+ + l  a +d+ +H+ +  +++++  ++  + ++lr++ l + ++p+++ + +F h+  +
    EHU00652.1 511 PQVFRHYARHYQTGEPMPAELHEKIIRAGKFNKGYEMSELLAAALLDLHWHSLDGGQPVQS--VDGfEQQALRSDDLDMAAVPPRYRSSYFQHIWGG 605
                   ********************************************************99977..44457788999999*****************99* PP

                   S-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 386 gYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                   gYaa+YY+y + ++la d +++f e++ l+r++G+ +r++iLsrG+s d + l+++++g ep+ +++lk  g
    EHU00652.1 606 GYAAGYYAYIWTQMLADDGYQWFVENGGLTRKNGDIFRQKILSRGNSSDLKALYEAWRGGEPKLEPMLKNRG 677
                   *******************************************************************99876 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00025       2.3       3      27 ..     151     175 ..     149     184 .. 0.90
   2 ?   -0.1   0.0      0.11   9.7e+02      33      47 ..     322     336 ..     321     342 .. 0.82
   3 ?   -1.5   0.0      0.29   2.6e+03      27      44 ..     628     645 ..     626     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00025
     DUF2680   3 deQkkeleaLyqqiaelrKqivdKy 27 
                 + Qk++l++L+q+ a l  q+ +K+
  EHU00652.1 151 EAQKQQLKTLNQEAARLSTQFTNKL 175
                 67****************9999997 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
     DUF2680  33 lTkeqgekikkniDk 47 
                 + k+qg+ i +  D 
  EHU00652.1 322 IDKQQGDFILSAWDW 336
                 99*******998875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.29
     DUF2680  27 yVeaGllTkeqgekikkn 44 
                 +Ve G lT+  g+   ++
  EHU00652.1 628 FVENGGLTRKNGDIFRQK 645
                 699*******99977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5035.06
//
Query:       EHU00653.1  [L=258]
Description: xanthine dehydrogenase accessory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-37  126.8   0.0    9.5e-37  126.3   0.0    1.3  1  XdhC_C     XdhC Rossmann domain
    3.2e-16   59.3   0.1    6.4e-16   58.3   0.1    1.5  1  XdhC_CoxI  XdhC and CoxI family


Domain annotation for each model (and alignments):
>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.0   1.1e-40   9.5e-37       2     125 .]     109     249 ..     108     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 1.1e-40
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..............-GGG-TT-SE.........-EEEE--S-HHHHHHHHHHHSS.S--SEEEESS CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa..............tkerfpeade.........tavvvlthdhklDaealeaalr.kkaayigllG 76 
                 ++fGaghv+qal++++a+l++++ ++d+re++                                  ++++v+th+h lD +++ea+l+ ++++y g++G
  EHU00653.1 109 LVFGAGHVGQALVNVLATLPCHINWIDSRENIFlsvppgvriqqpddP--------LdavaeapagSYYIVMTHHHPLDLALCEAILKrGDFHYAGVIG 199
                 79****************************654588877766654441........0444456668*********************867799****** PP

                 -HHHHHHHCTTS.--.......TTEESS-S--.S---SHHHHHHHHHHHH CS
      XdhC_C  77 SrkkaarrlerlraaglseeelarlhaPiGld.igaktpeeIAvsilAei 125
                 S++k++r++ rl+ +g+++ +larl++P+Gl+ +++k p+eIAv+i++ei
  EHU00653.1 200 SQTKSQRFRYRLAGKGIDDVRLARLRCPVGLPdVKGKLPAEIAVAIAGEI 249
                 ************************************************98 PP

>> XdhC_CoxI  XdhC and CoxI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   7.1e-20   6.4e-16       2      62 ..      14      73 ..      13      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 7.1e-20
                HHCT..EEEEEEEEEECSSSSGTT-EEEEETTS-EEE-SSSSCHHHHHHHHHHHHHHCT-- CS
   XdhC_CoxI  2 laagrpvalaTVvdteGsaprplGakmlvrpdgrviGsvgggclEaavideArallaagrt 62
                ++  +p++l+TV++ +Gs pr  Gakm+v++ + ++ ++ggg+lE + i++Arall++g+ 
  EHU00653.1 14 RETRQPCVLVTVLRDRGSVPRDGGAKMVVTAKE-TFLTIGGGHLEFQCIAQARALLESGQA 73
                6789****************************9.899********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1925.31
//
Query:       EHU00654.1  [L=785]
Description: xanthine dehydrogenase molybdenum binding subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.2e-209  694.6   1.2     1e-208  694.3   1.2    1.0  1  Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehyd
    1.7e-23   83.1   0.0    3.8e-23   81.9   0.0    1.7  1  Ald_Xan_dh_C   Aldehyde oxidase and xanthine dehydrogenase, a
  ------ inclusion threshold ------
       0.12   12.8   0.0       0.72   10.3   0.0    2.1  2  DHHA1          DHHA1 domain
       0.14   12.3   0.1        3.2    8.0   0.0    2.9  3  ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  694.3   1.2  2.3e-212    1e-208      10     550 .]     167     709 ..     156     709 .. 0.98

  Alignments for each domain:
  == domain 1  score: 694.3 bits;  conditional E-value: 2.3e-212
                    EEEEEEE-HHHHHHH-S.EEEEEEEEEEBE---SS--EEEEEEETCTTEEEEEES-SSHHHHHHHHHHHHT--GGGEEEE-SB-S--TTTT.SS-- CS
  Ald_Xan_dh_C2  10 lakiekGdveaafaeadhvvegefrtgrqehfylEtqaalavpddedgeltvysstqaphevrrlvaevlglpenkvrvivprvGGGFGgK.tqsv 104
                    +   ++Gdveaa+a+a+h+v+g f++g+qehfylEtq+al++p +ed+ l+v++stq+p+e+++lvaev+g+ +nkv++ ++r+GGGFGgK tq++
     EHU00654.1 167 H---QRGDVEAALARAPHRVQGAFHIGGQEHFYLETQTALVIP-GEDDALQVFCSTQNPTEIQKLVAEVMGITMNKVTIDMRRMGGGFGGKeTQAA 258
                    2...48*************************************.9*************************************************** PP

                    HHHHHHHHHHHHHTS-EEEE--HHHHHHHS-EEEEEEEEEEEEE-TTS-EEEEEEEEEEEESSTHHHCHCCHCCTTGGGTTTB--SEEEEEEEEEE CS
  Ald_Xan_dh_C2 105 plevlaalaAkktgrpVklvldReedmlatgkrhpfkikykvgadkdGkitaldvdlladaGayadlspavleralshldgpYkipnvrvegrvvy 200
                     +++l+a+aA+ tgr Vk++l R++dm +tgkrhpf ++y+vg+++dG++ ++++dl  ++G++ dls ++++ra++h+d++Y + ++r++g+ ++
     EHU00654.1 259 GVACLCAVAARLTGRAVKMRLARRDDMRITGKRHPFFVRYDVGVEDDGRLCGVKIDLAGNCGYSLDLSGSIVDRAMFHADNAYYLGDARITGYRCR 354
                    ************************************************************************************************ PP

                    -SSS-EE-SSTTTHHHHHHHHHHHHHHHHHHHT--HHHHHHHHBCECGCC...SEEETEESSS-HHHHHHHHHHHHTHHHHHHSCCHHCCT..ECE CS
  Ald_Xan_dh_C2 201 tNtppntafRGfGgpqamfalErlmdelAeelgldplelRrrNlikpgel..tpygqpvydsgdlpelldklkessdyeerraeqaefnag..wkk 292
                    tNt++ntafRGfGgpq+m+a+E++md++A+e g+dpl lR+rN++ ++e+  t+y+q+ ++++ l+e+ ++l+ ssdy+ rr+++a+fna+    k
     EHU00654.1 355 TNTASNTAFRGFGGPQGMVAIEQIMDHIARERGIDPLTLRKRNYYGKHERniTHYHQQ-VKDNLLDEITEQLEISSDYHTRREAIAAFNASspLLK 449
                    *********************************************7766644899999.699***************************8778889 PP

                    EEEEEEEEEEEBS--S.EETTEEEEEEEEE-TTS-EEEEESS--SSS-HHHHHHHHHHHHHT--GGGEEEE-SBTTSSS----S-TT-HHHHHHHH CS
  Ald_Xan_dh_C2 293 rGiglapvvegiglgftakflnqegalvrvntdGsvtvstggtemGqGletklaqiaaeeLgvpledvrvvegdtdkvpngsgtaaSrstdlngnA 388
                    rG++l+pv++gi  +ft++flnq+gal+ ++tdG+v++++ggtemGqGl+tk+aqi+a++L+++ ++++++ +dt kvpn+s+taaS++tdlng+A
     EHU00654.1 450 RGLALTPVKFGI--SFTSSFLNQAGALILIYTDGTVQLNHGGTEMGQGLNTKVAQIVAQVLQIDTDKIQITATDTGKVPNTSPTAASSGTDLNGKA 543
                    ************..9999****************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHCTS-CCCEEEETTEEEETEEEECHHHHHHHHHHTTSSEEEEEEE.......EEEETHCHCSBBEEEEEEEEEEEEET CS
  Ald_Xan_dh_C2 389 vkkAaeklrerllkiaaellevspedleledgkvvvkeksvslaelaaaaylervslsatgfykt....ldeetgkgppfayfaygaavaeVevDt 480
                    +++Aae lrer++ +  +l+++ pe++++++g v++ +++ ++a++a+ a+l++v+lsatg+y++    +d++  +g+pf+yfaygaa++eV vDt
     EHU00654.1 544 AQNAAEILRERMRTMLCSLHNCLPEAVSFNNGVVRAGDHYYTFAQVAQLAWLNQVPLSATGYYRVpgihYDRQADRGEPFYYFAYGAACCEVIVDT 639
                    ***************************************************************99******************************* PP

                    TT--EEEEEEEEEEE-BS-S-HHHHHHHHHHHHHHHHHHHHT---EEETTTEESS-STTTS----GGGS- CS
  Ald_Xan_dh_C2 481 etgevkvlrvvivhDvGksiNpaivegQieGGfvqGiGlalmEelvydedGqlltasladYkiPtaadiP 550
                    +tge+++lr++i+hDvG s+Npai++gQ+eGGfvqG+G++++Eelv++++Gql+t+++a+YkiP+++d+P
     EHU00654.1 640 LTGEYRLLRADILHDVGASLNPAIDIGQVEGGFVQGLGWLTCEELVWNDKGQLMTNGPASYKIPAISDVP 709
                    *********************************************************************9 PP

>> Ald_Xan_dh_C  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   8.6e-27   3.8e-23       1     110 []      39     146 ..      39     146 .. 0.93

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 8.6e-27
                   TT-SCCGGGCC-TTTE.EEEEEE-SSSSEEEEEEE-HHHHCSTTEEEEEEHHHHCCGTECCTTSSS-EEEESS-SSEESSTT-EEEEEEESSHHHHH CS
  Ald_Xan_dh_C   1 tGeavYvdDipapgal.ylafvrStkahAkivsidvsaalalpGVvavitakdlpkenkaigsiledeedallaedkvrsvgqavaavvAedeetAr 96 
                   +Gea+Y+dD + +  l +l+  +S +ahA+i+++d +   a+pGVv v+t++d+p+ n+ + + +  +   lla+d v++vgq+v av+Ae+ e+Ar
    EHU00654.1  39 SGEAQYIDDKAEQPGLlHLCPRLSDHAHARITRVDLQPCYAVPGVVRVLTWQDVPGVNDIG-PLQPGD--PLLAQDIVHYVGQIVIAVLAETPEAAR 132
                   69*******99888888****************************************7766.555555..5************************** PP

                   HHHHT-EEEEEE-- CS
  Ald_Xan_dh_C  97 kAaklvkveYeelp 110
                   + a+++ +eY +lp
    EHU00654.1 133 QGANAAMIEYASLP 146
                   **********9875 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00016      0.72      72     120 ..     202     260 ..     193     261 .. 0.73
   2 ?   -0.9   0.0      0.45     2e+03      38      65 ..     523     553 ..     488     559 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
                 EEEEEEEECT.EEEEEEEESSH.........SS-HHHHHHHHHHHTTCCEEEE.TCEEEE CS
       DHHA1  72 ivfvakeegd.kvkvsarskkd.........gvdagelakeaaaklgggGGGH.dlAaGa 120
                 ++++ +e++  +v +s     +         g+ ++++  +  + +ggg+GG+  +AaG 
  EHU00654.1 202 ALVIPGEDDAlQVFCSTQNPTEiqklvaevmGITMNKVTID-MRRMGGGFGGKeTQAAGV 260
                 55555666544444444444447777777779******999.9**************995 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
                 C...TCEEEEEECHCCHHHHHHHHHHHHHHT CS
       DHHA1  38 k...gvkvlvaevgeewdagalgiaadklks 65 
                     +++  +a +g++ + +a ++aa+ l++
  EHU00654.1 523 GkvpNTSPTAASSGTDLNGKAAQNAAEILRE 553
                 1333333334444477777777777777766 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00072       3.2       9      46 ..     210     247 ..     207     252 .. 0.90
   2 ?   -1.8   0.0      0.83   3.7e+03      16      36 ..     410     430 ..     406     435 .. 0.85
   3 ?    0.0   0.0      0.21   9.6e+02      20      49 ..     497     526 ..     494     546 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00072
                    GG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH- CS
  ACP_syn_III_C   9 edidalvphqanlriidavakklglpeekvvvnldeyG 46 
                    + +++++  q   +i + va+ +g++++kv+++++++G
     EHU00654.1 210 DALQVFCSTQNPTEIQKLVAEVMGITMNKVTIDMRRMG 247
                    567889999999999999******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.83
                    E-SSSHHHHHHHHHHHT--GG CS
  ACP_syn_III_C  16 phqanlriidavakklglpee 36 
                    + q++ +++d++ ++l+++ +
     EHU00654.1 410 HQQVKDNLLDEITEQLEISSD 430
                    5699999**********9987 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.21
                    SHHHHHHHHHHHT--GGGB--THHHH-B-G CS
  ACP_syn_III_C  20 nlriidavakklglpeekvvvnldeyGnts 49 
                    n ++ + va+ l+++ +k+ ++  ++G + 
     EHU00654.1 497 NTKVAQIVAQVLQIDTDKIQITATDTGKVP 526
                    66777889************9999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5769.00
//
Query:       EHU00655.1  [L=479]
Description: xanthine dehydrogenase subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-45  153.7   0.0      8e-45  152.6   0.0    1.5  1  FAD_binding_5  FAD binding domain in molybdopterin dehydrogen
    1.8e-30  105.2   1.0    4.5e-30  103.8   0.5    2.0  2  CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domai
      2e-30  104.6   0.8      5e-30  103.3   0.8    1.7  1  Fer2_2         [2Fe-2S] binding domain
    0.00035   20.5   6.3     0.0025   17.7   0.6    2.9  2  Fer2           2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_5  FAD binding domain in molybdopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.0   1.8e-48     8e-45       5     170 ..     194     357 ..     188     358 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 1.8e-48
                    EEE-SSHHHHHHHHHHCTTSEEESS-TTHHHHHHHTT---SEEEEGTTSGGGS-EEEESSEEEEETTSBHHHHHHHHHHHHHHHHSHHHHHTSS-H CS
  FAD_binding_5   5 ylrpasleealallaaepdaklvaGgtdlgvlmkekvarpehliditgipelkeieeteggleiGAavtlselaaealvrerypalsealekiAsp 100
                    ++ p++++++++ + a+pda l+aGgtdl +l++++ + + ++i +++++ lk+  e++++ ++GAa++l+++   ++++ r+p ++ +l+++As 
     EHU00655.1 194 CFIPKTVQQLAECCIAHPDAALLAGGTDLSLLITQRDQHLTKMIALGQVDALKACGEDDKHYQLGAAASLEHI--ADFMATRIPGFAGMLTRFASL 287
                    678**********************************************************************..79999**************** PP

                    HHHHH-BHHHHHHHT-TT-SSHHHHHHTTEEEEEEESSEEEEEECHHHEEETTEESS-TT-EEEEEEEE- CS
  FAD_binding_5 101 qiRnvaTiGGNlataspisDlapaLlaldAevelrsaegerevpleeflkgpgktalepgelitaveiPa 170
                    qiR+++T+GGNla+aspi+D  p Llal+A++ l+ ++ +r+vpl+ f++g+++t+l+pge+i ++ iP+
     EHU00655.1 288 QIRQLGTLGGNLANASPIGDASPTLLALNASLLLQHGDTQRTVPLDGFFTGYRQTVLRPGEFIHTILIPK 357
                    *********************************************************************7 PP

>> CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   5.5e+03      49      78 ..     131     163 ..     127     170 .. 0.55
   2 !  103.8   0.5     1e-33   4.5e-30       2     101 ..     366     464 ..     365     466 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                    HHHHHHTTSBSSH...HHHHHHHHHHHTTCHHH CS
  CO_deh_flav_C  49 kaeaaLiGkplse...elleeaakaleeelspa 78 
                    +ae aL+G+         + +aa++  ++++p+
     EHU00655.1 131 QAEHALAGNLCRCtgyRSIMAAAEQSLSDVQPD 163
                    667777776544311234455555555566665 PP

  == domain 2  score: 103.8 bits;  conditional E-value: 1e-33
                    EEEEESSSSSS-ESEEEEEEEEEETTCEECEEEEEEESSSSS-EE-HHHHHHHTTSBSSHHHHHHHHHHHHTTCHHHTCTTC-HHHHHHHHHHHHH CS
  CO_deh_flav_C   2 ayklsrrrendiaivnaAfrveleedgkiedariafggvaptpvraekaeaaLiGkplseelleeaakaleeelspasdprasaeYRrslavsllf 97 
                    a+k+s+r ++di++v aAf+++ +++ ++++a iafgg+a+tp+ra ++e+aL G  ls e+l++a++ale+ ++p sd rasa+YR ++a++ll+
     EHU00655.1 366 AWKVSKRLDDDISAVFAAFNIHTDNG-IVTRAHIAFGGMAATPLRAVACEQALCGAALSPETLARACQALEATFQPLSDFRASADYRLQVACNLLR 460
                    68*********************988.********************************************************************* PP

                    HHHH CS
  CO_deh_flav_C  98 rfll 101
                    r+++
     EHU00655.1 461 RYVY 464
                    *986 PP

>> Fer2_2  [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.8   1.1e-33     5e-30       1      75 [.      81     153 ..      81     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 1.1e-33
      Fer2_2   1 TveglgeeleelhpvqeafveegasqCGyCtpGfvmsaaalleenepkpteeeirealsgnlCRCtgYrpivdAv 75 
                 Tve+l++  ++lhpvq+a+v++++sqCG+CtpGfvms+++l +++ p+ +++++++al+gnlCRCtgYr+i++A+
  EHU00655.1  81 TVEDLRQG-KSLHPVQQAMVDCHGSQCGFCTPGFVMSLFSLQKNQ-PEWNRQQAEHALAGNLCRCTGYRSIMAAA 153
                 9*****88.67******************************8777.88888**********************98 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   5.7e-07    0.0025       5      77 ..       8      71 ..       4      72 .. 0.72
   2 !    4.6   0.6    0.0068        31      33      44 ..      99     110 ..      91     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.7e-07
                TEEEEEEEETTTHBHHHHHHH.TTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  5 gkevevevadgettlldaaee.nggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                +++v+ e  d+  t+l ++++ +   +++ +C  g Cg+C v++         + ++g+     + + +C ++v
  EHU00655.1  8 DRPVTEEQLDPNLTVLSYLRThQRRCGTKEGCASGDCGACSVTLG--------SVVDGKL--TYQTVNSCLMLV 71
                555555555666669999997799*********999*****9877........3455554..234568887766 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0068
                 TSSSSSSSSTTE CS
        Fer2  33 ysCggggCgtCl 44 
                 ++C+g++Cg C+
  EHU00655.1  99 VDCHGSQCGFCT 110
                 69*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3578.57
//
Query:       EHU00656.1  [L=442]
Description: guanine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-75  252.1   0.0    1.1e-74  251.9   0.0    1.0  1  Amidohydro_1  Amidohydrolase family
    6.6e-22   78.6   1.6    2.5e-15   56.9   0.0    2.6  3  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.17   11.2   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   0.0   1.8e-78   1.1e-74       2     344 .]      71     432 ..      70     432 .. 0.95

  Alignments for each domain:
  == domain 1  score: 251.9 bits;  conditional E-value: 1.8e-78
                   EEE-EEEEEEECETTECSSS...GHHHHH...........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESS CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga...tledwl...........vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkv 84 
                   ++PG++D H+H++q+++ ga   +l++wl            +p++aa++++ +++++l +Gtt+++ +g++++++++al+ aae+l  ++ri++gkv
    EHU00656.1  71 IIPGFVDCHIHYPQTEMIGAfgeQLLEWLnqytfpveaqyHCPDYAAQMSAFFLQQLLANGTTSALIFGTVHPQSVDALFSAAEAL--NMRIIAGKV 165
                   89***********************************************************************************8..********* PP

                   EGGS.......GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHH.TTEEEEEETSSCHHHHHHHHHHTTTEEEE CS
  Amidohydro_1  85 sldr.......gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkr.dlpvaiHaletkgevedaeaafgetiehg 173
                   ++dr       +++e s a++e+l+a++      +++g+++ al+p++ap+ s+++l+++  +  ++ d++v++H++e+++ev+++++ f+    h+
    EHU00656.1 166 MMDRnapdyltETPEESYAQTEALIARW------HERGRLNYALTPRFAPTSSPALLEKVQALRQRHpDVWVHTHLSENPHEVAWVKQLFP---DHN 253
                   ********99988888999999999998......6899************************99999************************...*** PP

                   TTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHH CS
  Amidohydro_1 174 thlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrg 270
                   ++l+v+++++l +  + ++ah+ hl+  e+  l+    ++ +a cp+sn+ l+sg++++ + +++Gv+vg+gtD +++g ++n+l++l  a+k+ ++
    EHU00656.1 254 GYLDVYHQYQLTGR-RSVFAHCLHLETQEWQCLHDT--NSAIAFCPTSNLFLGSGLFNIQRSWQQGVNVGIGTD-VGAGTTFNMLQTLGEAYKVGQL 346
                   **************.*********************..************************************.*****************77773 PP

                   CCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC...CT..............CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 271 llyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl...di..............laafvglkkdgnvkkvivkGklv 344
                        ++++ls++ea++ aT++gA+al ld+++G +++Gk+AD+vv+d+    +              l  ++ l +d+n+++++v+G+ v
    EHU00656.1 347 -----QQYKLSAAEAFYHATLGGAHALDLDKHIGNFAPGKEADFVVLDPavsALqrlrmanskdiwekLFVLMTLGDDRNIVQTWVNGRPV 432
                   .....4678**************************************998651166778888999*99********************976 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.38   2.3e+03     441     472 ..      15      46 ..      15      47 .. 0.92
   2 !   20.7   0.1   4.1e-08   0.00025       3      20 ..      64      81 ..      62      88 .. 0.90
   3 !   56.9   0.0   4.1e-19   2.5e-15     258     472 ..     208     432 ..      87     433 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.38
  Amidohydro_3 441 DlvvldadpldvdppelaearvrltvvdGrvv 472
                   D++    dp  + +++++ +  +lt+ +Grvv
    EHU00656.1  15 DFAAVAHDPESILAQARYLDDGVLTLREGRVV 46 
                   88888999999999999*9***********99 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 4.1e-08
  Amidohydro_3  3 iDakGrlvlPGFvDsHtH 20
                  iD++G+l +PGFvD H+H
    EHU00656.1 64 IDLRGKLIIPGFVDCHIH 81
                  9***************** PP

  == domain 3  score: 56.9 bits;  conditional E-value: 4.1e-19
  Amidohydro_3 258 pdfedealaelvaaadergldvaihaigdaavd.......dvldafeaa..aekngnqdrr.rlehaegvtesqiervaalqvaagvqpvfnfedel 344
                   +  ++ al e v a+++r  dv +h++  +           ++d+  +    +++ +++rr   +h+  + +++ + +++ + a++++p +n     
    EHU00656.1 208 APTSSPALLEKVQALRQRHPDVWVHTHLSENPHevawvkqLFPDHNGYLdvYHQYQLTGRRsVFAHCLHLETQEWQCLHDTNSAIAFCPTSNL---- 300
                   45556778899999999999999998877666555233344555555558899999****9******************************99.... PP

  Amidohydro_3 345 ldsrlgperargstpvkellnagvkvalgsD.apvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadA 440
                            ++g++++++ +++gv+v  g+D   +++f+ + ++g a    ++++        +ls  ea+ + T g+A al l+++ G+ ++G++A
    EHU00656.1 301 -------FLGSGLFNIQRSWQQGVNVGIGTDvGAGTTFNMLQTLGEAY---KVGQ----LQQYKLSAAEAFYHATLGGAHALDLDKHIGNFAPGKEA 383
                   .......345778******************88888888888888888...3333....36779********************************* PP

  Amidohydro_3 441 Dlvvldadpldvdppelaear.................vrltvvdGrvv 472
                   D+vvld +  +++  ++a+ +                 +++t+v+Gr+v
    EHU00656.1 384 DFVVLDPAVSALQRLRMANSKdiweklfvlmtlgddrnIVQTWVNGRPV 432
                   ******99999998888888899999*********************98 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05      0.17      50     122 ..     125     199 ..     111     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
                   HHHHHTT.-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-TTTS-EEEE-HHHHHHHHHHHHHHHHHHHT.G CS
  Peripla_BP_1  50 dllkakg.idgliiatsdts.fdditakaes.gipvialedaidapdgvPcvipddtqageestqkLiaeghkrp.i 122
                   ++l+a+g   +li +t  ++ +d++   ae+ ++ +ia +  +d     P ++ +  +  + +t+ Lia+ h+r+  
    EHU00656.1 125 QQLLANGtTSALIFGTVHPQsVDALFSAAEAlNMRIIAGKVMMDRN--APDYLTETPEESYAQTEALIARWHERGrL 199
                   45555551689*****999989*********9*****999998877..899***********************853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3440.49
//
Query:       EHU00657.1  [L=248]
Description: NAD(P)-binding L-allo-threonine dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-52  175.9   0.0    7.5e-52  175.6   0.0    1.1  1  adh_short        short chain dehydrogenase
    2.3e-35  122.3   0.1    2.8e-35  122.0   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.9e-12   47.5   0.0    2.6e-12   47.0   0.0    1.1  1  KR               KR domain
      6e-09   36.0   0.2    7.2e-09   35.8   0.2    1.2  1  NAD_binding_10   NAD(P)H-binding
    2.4e-06   27.2   0.4    5.3e-06   26.1   0.2    1.8  2  Epimerase        NAD dependent epimerase/dehydratase family
    0.00052   20.6   0.0     0.0012   19.4   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00053   19.2   0.0    0.00092   18.4   0.0    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0051   16.4   0.1     0.0085   15.7   0.1    1.3  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.011   15.5   0.7        1.1    9.0   0.1    2.3  2  Maf_N            Maf N-terminal region
      0.052   12.6   0.0      0.089   11.9   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
      0.069   12.5   0.0       0.11   11.9   0.0    1.3  1  Glyco_hydro_101  Endo-alpha-N-acetylgalactosaminidase
       0.17   11.9   0.0        5.5    7.2   0.0    2.6  2  TPR_7            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   0.0     5e-55   7.5e-52       2     188 ..       2     187 ..       1     194 [. 0.97

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 5e-55
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselsee 99 
                 +++vtGa++G+G+ i +++++ G kv++ +r++e+l+++++ l+++   ++++q+Dv++r+++e+++++  +++  +dvLvnNAG+  g +p+++ + +
  EHU00657.1   2 IIFVTGATAGFGQSITRRFIETGHKVIASGRRAERLKALKDALGDN---LYTVQLDVRNRAAIEEAIAHLPAEWRDIDVLVNNAGLaLGIEPAHRADVN 97 
                 689*********************************9999999986...*************************************9899********* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdmak 188
                 +we++i++N +g++ +travlpam++++ G+I+n++S+ag  p+ag+ +Y+A+Ka+v++++ +l+ +l+ t  rv+ + PGlv  T++ +
  EHU00657.1  98 DWENMIDTNTKGLVYMTRAVLPAMVERNVGHIINIGSIAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTALRVTDIEPGLVGgTEFSN 187
                 ***********************************************************************************9888765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.1   1.9e-38   2.8e-35       1     215 [.       7     220 ..       7     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 1.9e-38
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga  g G+ i +++ e G +v+++ ++ e+   +++l+++lg + + +++DV++++++e++++++ +++  +D+lvnnag a    +p++ ++ +++
    EHU00657.1   7 GATAGFGQSITRRFIETGHKVIASGRRAER---LKALKDALGDNlYtVQLDVRNRAAIEEAIAHLPAEWRDIDVLVNNAGLALG-IEPAHRADVNDW 99 
                   899*********************998887...9********99547************************************9.9*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   ++++d+n+++l+++++a+lp+m e+  g i+n+ s++++   ++ n+yga+Ka + +++ +l  +l     Rv  + pg++  +  s+++ f+   +
    EHU00657.1 100 ENMIDTNTKGLVYMTRAVLPAMVERnvGHIINIGSIAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTALRVTDIEPGLVGGTEFSNVR-FKGDDD 195
                   ********************7776669*******************************************************99999997.888889 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHC CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLa 215
                   ++++ +    + tpe+v ea+ + a
    EHU00657.1 196 KADKVYEGATALTPEDVTEAVYWVA 220
                   999999999999********99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.7e-15   2.6e-12       4     164 ..       4     162 ..       2     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.7e-15
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----.-----TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgv.lrdklleem 100
                 ++tG++ g+G++++r  +e g + ++  +R+       ++++++l++  g +  +v++Dv +++a+e++++++ ae + i   ++ Ag+ l  ++  + 
  EHU00657.1   4 FVTGATAGFGQSITRRFIETGHK-VIASGRR-------AERLKALKDAlGDNLYTVQLDVRNRAAIEEAIAHLPAEWRDIDVLVNNAGLaLGIEPAHRA 94 
                 79******************976.6678999.......3578888886699**********************************99963679****** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 + +d+e+++    kG+  + +++ +    +++ +++ + Siag +  ag   Y a+ af+ ++    r
  EHU00657.1  95 DVNDWENMIDTNTKGLVYMTRAVLPamveRNVGHIINIGSIAGSWPYAGGNVYGATKAFVRQFSLNLR 162
                 ********************9988778889*****************************999875554 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   4.8e-12   7.2e-09       1     100 [.       7     136 ..       7     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.8e-12
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHT.......T-SEEEES-........--TCC..HHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae..eglevvegdvtdvedlaealk.......gadaVvsal........ggggk..dee 76 
                     GAt + G+ ++++ ++  gh+v a  R++e+l++l+++  ++l +v++dv + ++++ea++       ++d+ v ++        +++++  d  
      EHU00657.1   7 GATAGFGQSITRRFIET-GHKVIASGRRAERLKALKDAlgDNLYTVQLDVRNRAAIEEAIAhlpaewrDIDVLVNNAglalgiepAHRADvnD-- 98 
                     9****************.5****************987778*******************999999999**9999887877666533333440.. PP

                     H..............HHHHHHHHHHCT--EEEEEEETT CS
  NAD_binding_10  77 g..............aknivdaakeagvkRfvlvsaig 100
                                    +++++ a+ e +v +++ +++i 
      EHU00657.1  99 WenmidtntkglvymTRAVLPAMVERNVGHIINIGSIA 136
                     144455556889999*******************9985 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   3.6e-09   5.3e-06       1     115 [.       3     134 ..       3     176 .. 0.77
   2 ?   -3.4   0.0       3.6   5.4e+03     216     239 ..     210     227 ..     209     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.6e-09
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S.---H....HHHHHSH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfke....e.qpdavihlAa.vggv....aassedp 84 
                 i+VtGat   G+ +++++ e g++vi+  r+  a++ ++l+d+       v+ld+++r+a+e++++       ++d+ ++ A+   g+    +a ++d 
  EHU00657.1   3 IFVTGATAGFGQSITRRFIETGHKVIASGRR--AERLKALKDAlgdnlYTVQLDVRNRAAIEEAIAHlpaeWrDIDVLVNNAGlALGIepahRADVNDW 99 
                 89*****************************..5555566666789999**********9999987533323478999998875544422216788888 PP

                 HHHHHHHTHH....HHHHHHHHHHHTCTEEEEEEE CS
   Epimerase  85 adfieknlqg....tlnlleaarkagvkrllflsS 115
                 + +i++n++g    t+ +l a+ +++v  +++++S
  EHU00657.1 100 ENMIDTNTKGlvymTRAVLPAMVERNVGHIINIGS 134
                 99999998752222667777777889999999998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHHTT-STTEEEE CS
   Epimerase 216 eDvaeaillvlehvdagdkgeiyn 239
                 eDv ea+++v++       +e++n
  EHU00657.1 210 EDVTEAVYWVATL------PEHVN 227
                 7999999999998......44555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.7e-07    0.0012      10      51 ..      12      54 ..       3      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.7e-07
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.....-EEE CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelg.....vkvt 51
                   +g++++++++++g   h+++ a+ r  e++++l+++lg     v++ 
     EHU00657.1 12 FGQSITRRFIETG---HKVI-ASGRRAERLKALKDALGdnlytVQLD 54
                   79***********...****.99**************9666553333 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.1e-07   0.00092       1     168 [.       3     190 ..       3     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.1e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.......T-SEEEE--..-- CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.....kvdvvfhaA..Al 87 
                      ++vtGa+  +G++++r+++++  k +i   r   +l ++++ l ++l +         v  dvr+++ +e+a+ +l     ++dv+++ A  Al
       EHU00657.1   3 IFVTGATAGFGQSITRRFIETGHK-VIASGRRAERLKALKDALGDNLYT---------VQLDVRNRAAIEEAIAHLpaewrDIDVLVNNAglAL 86 
                      78*****************99865.666677777899999988543333.........345777777777777643222226777777774445 PP

                      --HHHHHH..S.HHHHHHHHHHH....HHHHHHHHHHTT-SEEEEEEEGGGSS--...SHHHHHHHHHHHHHHHGGG--SSS-........... CS
  Polysacc_synt_2  88 KhVPlvee..n.pleaiktNvlg....tenvieaaieagvkkvvliStDKAvnPt...nvmGatKrlaekllqalakeseekk........... 160
                         P+     n + ++i+tN  g    t+ v+ a +e +v +++ i +     P    nv+GatK++  ++  +l++  + +            
       EHU00657.1  87 GIEPAHRAdvNdWENMIDTNTKGlvymTRAVLPAMVERNVGHIINIGSIAGSWPYaggNVYGATKAFVRQFSLNLRTDLHGTAlrvtdiepglv 180
                      555654431131445677775543333899999999********998887777754449********999988888777555556666777777 PP

                      ..-EEEEEEE CS
  Polysacc_synt_2 161 ..tkfvvvRf 168
                        t+f+ vRf
       EHU00657.1 181 ggTEFSNVRF 190
                      7777777776 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.7e-06    0.0085       1      63 [.       3      66 ..       3      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.7e-06
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHS...TTEEEES-TT-HHHHHHHHT CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkea...Gvelvkgdlddkeslvealk 63
                I v+GaT   G+s++r +++ ghkv a  R  ++  +k+lk+a      +v+ d+ +++ ++ea+ 
  EHU00657.1  3 IFVTGATAGFGQSITRRFIETGHKVIASGRRAER--LKALKDAlgdNLYTVQLDVRNRAAIEEAIA 66
                78**************************997744..44444432114567899**********996 PP

>> Maf_N  Maf N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3    0.0054       8.1      22      31 ..     206     215 ..     202     216 .. 0.86
   2 ?    9.0   0.1   0.00076       1.1       4      22 ..     214     232 ..     213     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0054
       Maf_N  22 gLtpEDAvEa 31 
                  LtpED+ Ea
  EHU00657.1 206 ALTPEDVTEA 215
                 6********8 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00076
       Maf_N   4 EdLYWmatyqQqlnpeaLg 22 
                 E  YW at++ ++n   L+
  EHU00657.1 214 EAVYWVATLPEHVNINTLE 232
                 778**********977776 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     6e-05     0.089       1      50 [.       1      68 [.       1      84 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6e-05
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..................T--TTSHHHHHHHHHHH CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre..................eldltdaeavaellkea 50
                   m i vtGa+   G+ +++++ e g++v+a +r+                  +ld+++++a++e++++ 
     EHU00657.1  1 MIIFVTGATAGFGQSITRRFIETGHKVIASGRRaerlkalkdalgdnlytvQLDVRNRAAIEEAIAHL 68
                   6699**************************99999****************9******9999999654 PP

>> Glyco_hydro_101  Endo-alpha-N-acetylgalactosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.3e-05      0.11     148     205 ..      27      93 ..      16     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
                      HHHTT.HHHHHHHHHHHH-.T--EEEEESTSTTS.........HHHHHHHHHHHCTT-EEEES-TTS CS
  Glyco_hydro_101 148 DlasgkllkRfkelreelgeeldfiYvDvyresg.........waskklskelnkqGwrvasewaea 205
                       +asg++++R+k l+++lg++l ++ +Dv ++++          + + +   +n++G+ ++ e a+ 
       EHU00657.1  27 VIASGRRAERLKALKDALGDNLYTVQLDVRNRAAieeaiahlpAEWRDIDVLVNNAGLALGIEPAHR 93 
                      589**************************97766555555555445566666777777777776665 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.22   3.2e+02      11      28 ..      95     110 ..      91     121 .. 0.80
   2 ?    7.2   0.0    0.0037       5.5      12      35 ..     191     212 ..     187     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.22
       TPR_7  11 rlGdyeeAielyeqsLal 28 
                 +++d+e+ i+ +++  +l
  EHU00657.1  95 DVNDWENMIDTNTK--GL 110
                 49********9999..55 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0037
       TPR_7  12 lGdyeeAielyeqsLaltkdpeda 35 
                  Gd ++A ++ye   a++  ped+
  EHU00657.1 191 KGDDDKADKVYEG--ATALTPEDV 212
                 59***********..999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1974.92
//
Query:       EHU00658.1  [L=109]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-42  143.1  12.6    3.5e-42  143.0  12.6    1.0  1  UPF0060   Uncharacterised BCR, YnfA/UPF0060 family


Domain annotation for each model (and alignments):
>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0  12.6     2e-46   3.5e-42       1     105 [.       2     106 ..       2     109 .] 0.98

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 2e-46
     UPF0060   1 vlksillfllaalaeigGaylvwlwlreaksvllalvaaillavygflatlqpaafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalialvGvl 99 
                 ++k+ llf+++alaei+G++l+wlwl++++s++l+++aa++l+++++l+tl+paa+GrvyaayGGv+v++al+w+++vdgvkl  +dw Galia+ G+l
  EHU00658.1   2 LIKTALLFFITALAEITGCFLPWLWLKKGASAWLLVPAALSLTLFVWLLTLHPAASGRVYAAYGGVYVLTALVWLRIVDGVKLSIWDWSGALIAFSGML 100
                 589************************************************************************************************ PP

     UPF0060 100 vilyap 105
                 +i+ ++
  EHU00658.1 101 IIVLGW 106
                 ***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 892.74
//
Query:       EHU00659.1  [L=107]
Description: uncharacterized DUF1283 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-44  148.4   2.1      6e-44  148.1   2.1    1.0  1  DUF1283   Protein of unknown function (DUF1283)


Domain annotation for each model (and alignments):
>> DUF1283  Protein of unknown function (DUF1283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   2.1   3.4e-48     6e-44       2      83 .]      26     107 .]      25     107 .] 0.98

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 3.4e-48
     DUF1283   2 klvienGdsalskeaarqskeqWnetrsLRnkvnkrvekefdkadkaidkrdkCeksanvnaYWepntkrCLDrrtGrpvkP 83 
                 +l+ienG sal++eaarqskeqWn+t++LRnkvn+rvekefdkad+a+d+rdkCe+san+naYWepnt rCLDrrtGrpv P
  EHU00659.1  26 RLIIENGSSALNNEAARQSKEQWNDTHMLRNKVNRRVEKEFDKADRAFDTRDKCEQSANLNAYWEPNTLRCLDRRTGRPVLP 107
                 79*****************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 963.21
//
Query:       EHU00660.1  [L=98]
Description: hypothetical protein CKS_2889 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-25   87.9   1.4    4.6e-25   87.6   1.4    1.1  1  DUF1161   Protein of unknown function (DUF1161)


Domain annotation for each model (and alignments):
>> DUF1161  Protein of unknown function (DUF1161)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   1.4   2.6e-29   4.6e-25       1      52 []      23      76 ..      23      76 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 2.6e-29
     DUF1161  1 CeelkaeIeaKiqangV..tsytLeiVpndqaaqaagkVVGsCengtkkIvYkR 52
                Ce++ka+I++Ki++ngV  ++++L++Vpndqa+qa g+VVG+C+n+t+kIvYk+
  EHU00660.1 23 CESVKADISQKIIQNGVpeSGFSLDVVPNDQADQAVGQVVGHCDNDTQKIVYKK 76
                ****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 899.75
//
Query:       EHU00661.1  [L=487]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-52  176.4  55.4    7.3e-52  176.4  55.4    2.2  2  MFS_1            Major Facilitator Superfamily
      1e-14   54.3  32.7    9.2e-11   41.3  16.0    2.7  2  Sugar_tr         Sugar (and other) transporter
      1e-05   24.2   8.7    2.1e-05   23.2   8.7    1.4  1  TRI12            Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4  55.4   1.2e-55   7.3e-52       2     352 ..      19     406 ..      18     407 .. 0.87
   2 ?    0.8   0.2      0.03   1.8e+02     149     172 ..     456     475 ..     449     486 .. 0.67

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 1.2e-55
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +la f++a+  +i+++a+p ++  +lg   + +g+++++y l++a++++++Grl+d +Gr+r+l+lg++lf++g++l+ fa+s+++l+v+r++qGlgag
  EHU00661.1  19 MLAMFMAAIEVTIVATAMP-TIVAELG-GFAHFGWVFSVYLLTQAISVPLYGRLADLWGRKRMLFLGITLFLAGSVLCGFAHSMFWLIVFRAFQGLGAG 115
                 7999***************.9******.**********************************************888889999999************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 a++p+  +++ad+++++er+++ g+ls+ ++++ai+gpl g++l+++++W+++f+++ ++++++++l ++llp+ p +++ + +  +            
  EHU00661.1 116 AIMPLTSTIVADIYSPRERASVQGWLSSVWGVAAIVGPLSGAWLVQHFNWSVIFWVNVPIGIISMLLLAILLPTHPQKHPAP-SLNLIgsgwltlcisa 213
                 ****************************************************************998666665555555555.3444479999999999 PP

       MFS_1 189 ................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallal 255
                                                 +++++apl+p    l+ ++ + +  i+ l++++ ++g++++lp+++q v g s  l+ag++la++++
  EHU00661.1 214 vliallqaeqlgywlllfllvgglagwqltrhEQQAQAPLFP--MRLWQSKLIIAGNIGNLVIGATMMGVSAFLPTWIQGVTGGS-PLQAGTALAMMSI 309
                 999999999999999999999999999999999999999999..4444444221233333344556666****************.8************ PP

       MFS_1 256 vgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 ++  ++ ++grl+  ++ r++  l+ +ll++++++l+ll   ss + + + ++liG+g+g++++++l+ ++++a    +g  ++ +++ + +g+alg
  EHU00661.1 310 GWPLASTVSGRLMLFTSYRFTAQLGAILLIAGSALLLLLHRESSLLQAGFTSFLIGTGMGMTSTTFLVSVQNHAEYGIRGICTASVMFSRMIGSALG 406
                 **999********98887777777777777777777777666455555559999*****************************************99 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.03
       MFS_1 149 gWravfyilaivsllafvlfllll 172
                 + ++vf+++ +++l a++    + 
  EHU00661.1 456 SLHWVFIVALVIALSAMW----VA 475
                 567899999999999844....33 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3  16.0   1.5e-14   9.2e-11      48     192 ..      49     188 ..      23     192 .. 0.92
   2 !   18.9   7.9   9.5e-08   0.00057      44     174 ..     296     424 ..     241     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.5e-14
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                  g+++s++l+ ++i+  + g l+d +GRk  l  +++lf++g+vl+++a+   s+  liv R + G+g+G++  l+++ ++ i  ++ R  + ++  + 
  EHU00661.1  49 FGWVFSVYLLTQAISVPLYGRLADLWGRKRMLFLGITLFLAGSVLCGFAH---SMFWLIVFRAFQGLGAGAIMPLTSTIVADIYSPRERASVQGWLSSV 144
                 69************************************************...778899**************************************** PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS- CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllill.lflP 192
                 + +  +v+  +g+ l +  n   w + +++++ + ++ ++ll ++lP
  EHU00661.1 145 WGVAAIVGPLSGAWLVQHFN---WSVIFWVNVPIGIISMLLLaILLP 188
                 ************99999999...*******99999875555425555 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 9.5e-08
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s ++ g  ++++++G  + s ++g l+ + +++ +   +a+l+++g++l  + + ++s+ +  +  +l+G g+G++s++  + ++  A   +Rg+++  
  EHU00661.1 296 SPLQAGTALAMMSIGWPLASTVSGRLMLFTSYRFTAQLGAILLIAGSALLLLLHRESSLLQAGFTSFLIGTGMGMTSTTFLVSVQNHAEYGIRGICTAS 394
                 567889999*********************************************99999999999********************************99 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrill 174
                   ++  +G  +++ ++ ++ + +   +wr++ 
  EHU00661.1 395 VMFSRMIGSALGTAVMGAVLNLNL--QWRLPH 424
                 999999999988877776644444..599885 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   8.7   3.6e-09   2.1e-05      60     216 ..      29     186 ..      12     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.6e-09
       TRI12  60 lqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpag.asplfvge 157
                 +   a+a+p i+ ++g     + + +++ + qa+s+ + grl+d +gr+ ++ l   l l g+++   a  +  l+   ++ g+ ag     +  +v +
  EHU00661.1  29 VTIVATAMPTIVAELGGFAHFGWVFSVYLLTQAISVPLYGRLADLWGRKRMLFLGITLFLAGSVLCGFAHSMFWLIVFRAFQGLGAGAIMpLTSTIVAD 127
                 456799***********99999999999************************************99999999999999999999999765145678999 PP

       TRI12 158 lmsnktk..flgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvw 216
                 + s + +  + g l  s+  v+   ++p  g  l    +w  if++ + +  i++ll+ + 
  EHU00661.1 128 IYSPRERasVQGWLS-SVWGVAAI-VGPLSGAWLVQHFNWSVIFWVNVPIGIISMLLLAIL 186
                 999765511556554.55555554.8***********************999999987664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3552.75
//
Query:       EHU00662.1  [L=238]
Description: putative membrane component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-24   85.9  14.7    2.8e-24   85.9  14.7    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.022   14.9   5.7      0.022   14.9   5.7    3.9  3  DUF4229       Protein of unknown function (DUF4229)
        1.5    9.3  21.1       0.43   11.1   2.7    3.2  2  FtsX          FtsX-like permease family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.13   7.8e+02     156     182 ..      11      37 ..       3      46 .. 0.63
   2 !   85.9  14.7   4.7e-28   2.8e-24       1     181 [.      62     234 ..      62     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
  BPD_transp_1 156 ggvlalviavlllnlvadilqrlldpr 182
                   g++l +viavl  ++    + +l+++r
    EHU00662.1  11 GLALLAVIAVLGALVWGLGWDTLVARR 37 
                   455555555555555555555555555 PP

  == domain 2  score: 85.9 bits;  conditional E-value: 4.7e-28
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   gi+ Gil+ + + +++ + ++ +++v+ +lP+++++ l         ++g +  p++++l+l ++ +++++++a+l+++p +l+eaa   G+++wq+
    EHU00662.1  62 GIPSGILLSRPFARRWAEYVMQIFNVGNTLPPLAVLALAM------VVIGIGDKPALFALFLASLLPIVRNTYAGLSAVPPSLIEAANGIGMTKWQR 152
                   8999*****99999********************888888......799************************************************ PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   +r+v lPnalp+i++g+++a ++++g a l+ ++g+++ +g l++  i  +d++  +  g++a++++ l+l  ++  l r+l+p
    EHU00662.1 153 LRQVELPNALPVILAGVRIATAINVGTAPLAFLIGASS-FGELIFPGIYLNDFPVLI-LGAVATALVALILDMLLATLGRYLSP 234
                   ***********************************999.*****************9.9*********************9998 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   5.7   3.6e-06     0.022       8      63 ..      15      83 ..      11      87 .. 0.89
   2 ?    0.7   1.9     0.095   5.7e+02      16      40 ..      95     120 ..      89     124 .. 0.58
   3 ?   -2.3   5.0      0.83     5e+03      29      48 ..     204     224 ..     161     228 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
     DUF4229  8 laLfvvltavillvarliglp.............vpllvaallAlvvalplSmvllkklRdrataqvae 63
                la+++vl a+++++++   ++             + +++++l+Al+v  p +++l ++  +r ++ v +
  EHU00662.1 15 LAVIAVLGALVWGLGWDTLVArrvdliylgqqhlFLVFWSMLFALLVGIPSGILLSRPFARRWAEYVMQ 83
                899999*******998777778999******************************99999999888876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.095
     DUF4229  16 avillvarliglp.vpllvaallAlv 40 
                 av++l+ ++ig+   p l a++lA +
  EHU00662.1  95 AVLALAMVVIGIGdKPALFALFLASL 120
                 34444444444444677777777765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.83
     DUF4229  29 vpllvaallA.lvvalplSmv 48 
                 +p+l++  +A ++val+l m+
  EHU00662.1 204 FPVLILGAVAtALVALILDML 224
                 455544333324556555554 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  10.7     0.061   3.6e+02      25      79 ..      51     106 ..       9     128 .. 0.82
   2 ?   11.1   2.7   7.2e-05      0.43      10      83 ..     145     220 ..     139     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.061
        FtsX  25 illitlvalviGlglgllaaqllsdvllssvfs.selkisidlitvliiivlllll 79 
                 ++   l+al++G+  g+l++ ++   + ++v + +++  ++++++vl+++++++ +
  EHU00662.1  51 VFWSMLFALLVGIPSGILLSRPFARRWAEYVMQiFNVGNTLPPLAVLALAMVVIGI 106
                 45556778888888889999999999988866568889999998888888887754 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.2e-05
        FtsX  10 lGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs..selkisidlitvliiivlllllalla 83 
                 +Gm+k+q l+++ + ++l +++a v    + ++ + +l  ++++s f+  + + i+++ ++vli+ ++++ l+ l+
  EHU00662.1 145 IGMTKWQRLRQVELPNALPVILAGVRIATAINVGTAPLAFLIGASSFGelIFPGIYLNDFPVLILGAVATALVALI 220
                 8***********9999999999999777777777777777777777776888888888888888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1739.90
//
Query:       EHU00663.1  [L=303]
Description: periplasmic substrate-binding component of an ABC superfamily glycine/betaine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-66  223.0   0.0    5.2e-66  222.9   0.0    1.0  1  OpuAC     Substrate binding domain of ABC-type glycine betain


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.9   0.0   2.9e-70   5.2e-66       2     256 ..      28     298 ..      27     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.9 bits;  conditional E-value: 2.9e-70
                 EEEEEEESSHHHHHHHHHHHHHHHHTTE.EEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHH................HHHHHHHHHHHHEEEEEEEES CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGy.kveltnlgstavlfaalasGdiDvypeewtgta................yeaykkaveekkglevlgplg 83 
                 ++v+++k++teq++l++++   l+kkG+ +  + n+++ ++ ++a+ +++iD+++ e+tgt+                y+++k  +++  gl +l+p++
  EHU00663.1  28 PLVLATKSFTEQHILSAMTVMWLQKKGFqVIPKRNIAT-TISRNAMLNKQIDMTW-EYTGTSliifnhinkpmssqeaYQTVKN-LDGRLGLIWLNPAP 123
                 799*************************9999*****9.999*************.*******************997766666.999*********** PP

                 EEECEEEEEEHHHHHHHTTTBHHHH.........CTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEE.GSCEEEEHH.HHHHHHHTTCS CS
       OpuAC  84 agnteglavpkyvaekygiksisDL.........kkpaedlelgakgeflgrpdgwgcekvtegllkaYgldkvelv.egseaamda.elyaaykrgep 171
                 ++nt+++a++++ a+k+gi+++s+L          +p+++++lg++ ef+gr+dg++       l+k+Y+l     + + + ++md+ ++y+a+++g +
  EHU00663.1 124 MNNTYAFAMQRARADKEGISTLSQLvakidqvrkTDPKHNWRLGLDLEFYGRSDGMK------PLQKTYNL----TLdRPQIRQMDPgLVYNAIRDGFV 212
                 *************************87777776666666******************......********....5669******************** PP

                 SEEEEETTSTHHHHTTEEE-B-TTSTS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC..--HHHHHHHHHHHHTTTT-HHHHHHHHHH CS
       OpuAC 172 vvvyawtPdwaikkydlvvLedpkglfppaynvvpvvrkefaekaPevaafLekls..ldtetlnelnaqvdvegkdpeevAkawla 256
                 +++ ++t+d+++k +dl+vL+d+k++fp  ynv+pvvrk+++e +P ++a+L++ls  +++e+++e+n++vd ++++pe+vA+++l+
  EHU00663.1 213 DAGLIYTTDGRVKGFDLKVLQDDKHFFPS-YNVTPVVRKDVLESHPGLEAALNQLSplITDEAITEMNKRVDIDHQSPEQVARDFLQ 298
                 *****************************.***************************99**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2348.51
//
Query:       EHU00664.1  [L=215]
Description: putative binding-protein-dependent transport system component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-20   72.1  22.1    4.6e-20   72.1  22.1    1.4  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.23   4.2e+03      47      59 ..      17      29 ..      11      35 .. 0.57
   2 !   72.1  22.1   2.5e-24   4.6e-20       1     179 [.      36     205 ..      28     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.23
  BPD_transp_1 47 silghlilpviil 59
                    ++h++l ++++
    EHU00664.1 17 LTWQHTWLVLVAV 29
                  4577777764333 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 2.5e-24
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg..hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   g++lGil+   r k+l   ++++  ++l++P+++l+ l++    ++s +g   ++ p+i++++l+++ ++++++  al++lp++l+ea r  G++ w
    EHU00664.1  36 GVPLGILIV--RIKWLATPVLGIATIVLTIPTIALFGLMIP---LFSLIGqgIGAVPAITAVFLYSLLPIVRNTHTALENLPDGLREAGRGIGMTFW 127
                   677777777..99*********************6666663...33566611556679*************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   q++r v +P+alp+i+ g++ a++ ++g  +++  +g++ Glg+lll+ i+g+d+      +++a+++++ ll +v+d+l   l
    EHU00664.1 128 QRLRWVEIPMALPVIFGGIRTAVVMNVGVMAIAAVIGAG-GLGLLLLDGISGSDVR-----MLIAGALMICLLAIVLDWLLHRL 205
                   *************************************66.7***************.....56666666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1662.53
//
Query:       EHU00665.1  [L=378]
Description: putative ATP/GTP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-35  122.4   0.0      9e-35  120.2   0.0    2.0  2  ABC_tran      ABC transporter
    1.7e-12   47.6   0.1    2.3e-06   27.9   0.0    2.7  2  CBS           CBS domain
    2.9e-05   24.0   0.0       0.16   11.7   0.0    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    8.4e-05   23.0   0.0    0.00019   21.8   0.0    1.7  2  AAA_16        AAA ATPase domain
    0.00025   21.0   0.0     0.0005   20.0   0.0    1.5  1  Rad17         Rad17 P-loop domain
    0.00057   20.3   0.2       0.01   16.3   0.2    2.5  1  AAA           ATPase family associated with various cellular 
     0.0038   17.5   0.0      0.015   15.6   0.0    2.0  2  AAA_22        AAA domain
     0.0045   16.7   0.0     0.0092   15.7   0.0    1.5  1  AAA_30        AAA domain
     0.0049   16.8   0.1     0.0087   16.0   0.1    1.4  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.028   14.4   0.0    1.5  1  AAA_5         AAA domain (dynein-related subfamily)
      0.023   13.9   0.0      0.028   13.6   0.0    1.3  1  G-alpha       G-protein alpha subunit
      0.026   13.6   0.2      0.042   12.9   0.2    1.3  1  T2SSE         Type II/IV secretion system protein
      0.037   13.8   0.2       0.14   11.8   0.1    1.9  2  AAA_24        AAA domain
      0.039   13.5   0.1       0.25   10.9   0.1    2.2  2  AAA_25        AAA domain
      0.044   14.1   0.1       0.15   12.4   0.1    1.8  1  AAA_19        AAA domain
      0.058   13.4   0.0       0.11   12.5   0.0    1.4  1  AAA_14        AAA domain
      0.065   13.0   0.0       0.14   11.9   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
       0.12   11.8   0.0       0.22   10.9   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.13   12.0   0.0       0.19   11.4   0.0    1.2  1  AAA_15        AAA ATPase domain
       0.19   12.0   0.3       0.48   10.7   0.2    1.8  2  AAA_28        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0     1e-37     9e-35       1     136 [.      22     168 ..      22     169 .. 0.94
   2 ?   -0.4   0.0       1.7   1.5e+03      79     102 ..     283     330 ..     244     370 .. 0.63

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 1e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 ++nvsl++ +ge+ +++G++G+GK+t lk++ +l   t+G+il++g+d+++q+++ lr++ig++ q+  lfp++t++en             + +e+++
  EHU00665.1  22 VDNVSLEVPAGEMCVLLGPSGCGKTTTLKMINRLIPATSGRILINGEDTNTQDTTTLRRNIGYVIQQIGLFPNMTIEENitvvprmlgwdkkQCRERAT 120
                 58**************************************************************************************87666666688 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++s + l+   ++ +++ p+++SgGq+qr+ + ral+ +p++ll+DEp+
  EHU00665.1 121 ELMSMVALDP--TKFLHRYPREMSGGQQQRIGVIRALAADPPVLLMDEPF 168
                 8888888777..88899999*****************************6 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.7
                 H........................HHHTCHHHHHHHSTTGGTTCBGE CS
                 x........................xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n........................esdeeiekalsklglkelkdtvv 102
                 n                         ++ ++e++l++++ ++++++++
  EHU00665.1 283 NdmrsitvvdddgkplgfvkrrearSASGRCEDILHTFRVTGKAEENL 330
                 133333333335555555555555555666888888887777666655 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.6e-09   2.3e-06       3      52 ..     257     307 ..     255     311 .. 0.85
   2 !   16.9   0.0   7.4e-06    0.0066      13      56 ..     325     368 ..     314     369 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.6e-09
                 HH.SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   3 di.mtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 d+    + +tv+ +t+l +a+ +m +++ +++ VVd+dgk++G v +r   
  EHU00665.1 257 DVtDQQPTITVKRSTPLMDAFSTMDDNDMRSITVVDDDGKPLGFVKRREAR 307
                 664445779***************8888*****************999765 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 7.4e-06
                 ETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS  13 ppdttleealelmrekg.vsrlPVVdedgklvGivtlrDllrall 56 
                 + +++l+ +l ++ e++ v  +P+Vde+g++ G +++  ++++l+
  EHU00665.1 325 KAEENLRVVLSKLYEHNtV-WMPIVDEEGRYSGEISQDYIADYLS 368
                 567899******9999988.*****************99999985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00067       0.6       3      25 ..      36      58 ..      34     101 .. 0.74
   2 !   11.7   0.0   0.00018      0.16     232     298 ..     136     200 ..     109     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00067
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                vl Gp g+GK++ L+ +  l  +
  EHU00665.1 36 VLLGPSGCGKTTTLKMINRLIPA 58
                89***************999554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00018
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHS 298
                 + +re+S G+++ ++++ al++++   ++ll DEp    +P + r+++  e+l+  ++ +  v+l++H+
  EHU00665.1 136 RYPREMSGGQQQRIGVIRALAADP---PVLLMDEPFGAVDP-INREVIqnEFLDMQRQLKKTVMLVSHD 200
                 6789******************99...**************.556666688887777778899999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.1e-07   0.00019      17      67 ..      23      76 ..      16     166 .. 0.79
   2 ?   -2.9   0.0       8.9     8e+03       2      24 ..     240     263 ..     239     267 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.1e-07
      AAA_16 17 ervrsgrp..elvllsGesGvGKsslvrellralekdg.giflrgkcdqlesai 67
                ++v+   p  e+++l G+sG+GK++ ++++ r + ++   i+++g+ +  +  +
  EHU00665.1 23 DNVSLEVPagEMCVLLGPSGCGKTTTLKMINRLIPATSgRILINGEDTNTQDTT 76
                544444445599*******************99988852555666655554443 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.9
      AAA_16   2 lvGReeeleqLlsale.rvrsgrp 24 
                 +vG ++ l++Ll +   +v +++p
  EHU00665.1 240 FVGQDRTLKRLLLVQAgDVTDQQP 263
                 899999999996554435555555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.6e-07    0.0005      33     113 ..      20      96 ..      10     118 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.6e-07
       Rad17  33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskel.giklrewlnpvslkepdnqksdfkgltekesrflsqiesfkele 113
                 ++++  +Le    ++ ++ GPsGCgk+t++k++ +   +++ r  +n+     ++   +d+ +l       + qi  f+++ 
  EHU00665.1  20 KAVDNVSLEVPAGEMCVLLGPSGCGKTTTLKMINRLIpATSGRILINGED---TN--TQDTTTLRRNIGYVIQQIGLFPNMT 96 
                 677778888888889999*************9988651334444555544...33..3333333333333455555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   1.1e-05      0.01       2      98 ..      36     192 ..      35     215 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-05
                 EEESSTTSSHHHHHHHHHHHHTHE.................................................................EEEEETTTCS CS
         AAA   2 llyGppGtGKTllakavakelgve.................................................................fleisgsell 35 
                 +l Gp G+GKT++ k + + + ++                                                                 ++ ++ +++l
  EHU00665.1  36 VLLGPSGCGKTTTLKMINRLIPATsgrilingedtntqdtttlrrnigyviqqiglfpnmtieenitvvprmlgwdkkqcreratelmsMVALDPTKFL 134
                 699**************9997433333334444444555555556666666666666666666666666666666666666666666555666666666 PP

                 SSSTTHHHHHHHHHHHHHHHTS.TSEEEEEET.GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  36 skyvgesekkirelfkeakeka.kpsilfiDE.idalaksrsgseseeeervvnqLlteldgvkk 98 
                   y  e++   ++ +  +++ a +p +l++DE + a+ + +       +e ++n++l +  ++kk
  EHU00665.1 135 HRYPREMSGGQQQRIGVIRALAaDPPVLLMDEpFGAVDPIN-------REVIQNEFLDMQRQLKK 192
                 66999999999999999999998889999999433333333.......55566666666665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-05     0.015       7      31 ..      34      58 ..      31     123 .. 0.81
   2 ?   -1.8   0.0       3.7   3.3e+03      45      84 ..     301     339 ..     276     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqlde 31
                ++v+ G+sG+GKTt+l+++ +  ++
  EHU00665.1 34 MCVLLGPSGCGKTTTLKMINRLIPA 58
                789***************9988754 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.7
      AAA_22  45 vtlpsstsskdllrellralglelkaerlsseellealeq 84 
                 v+  +  s +  ++++l+ + + +ka + +++ +l++l++
  EHU00665.1 301 VKRREARSASGRCEDILHTFRVTGKA-EENLRVVLSKLYE 339
                 55556667788899999999988888.7777666666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     1e-05    0.0092      19      52 ..      33      66 ..      26     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrvigl 52
                 ++vl Gp G GKtt+lk +++++ a  gr+++ 
  EHU00665.1 33 EMCVLLGPSGCGKTTTLKMINRLIPATSGRILIN 66
                4899********************9997777654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.7e-06    0.0087      97     143 ..      30      78 ..       3      87 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.7e-06
                  CTTSEEEEECSTTSSHHH...HHHHHCTT-----S--------------S CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKSt...LinallpelelktgevseklgrGkhTTta 143
                   +++++vl+G+SG GK+t   +in+l+p ++ ++  +  ++ + + TTt 
   EHU00665.1  30 PAGEMCVLLGPSGCGKTTtlkMINRLIPATSGRIL-INGEDTNTQDTTTL 78 
                  34599************966668888888665553.55566666666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.1e-05     0.028       3      41 ..      36      75 ..      34      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-05
                EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHH CS
       AAA_5  3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedl 41
                +L+Gp+G+gK++  + + +++  ++  +  + +dt+++d 
  EHU00665.1 36 VLLGPSGCGKTTTLKMINRLIpATSGRILINGEDTNTQDT 75
                79*******************8666677777777777764 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-05     0.028      27     104 ..      36     125 ..      17     240 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
                 EEEESTTSSHHHHHHHHHHHCS--..........--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT..........HHHC-SS-SCCCS-H CS
     G-alpha  27 lllGqseSGKsTilkqlkllykkg..........fseeelatwraviqlnivrsiktilealesleselsesf...elqelkerldplkkv 104
                 +llG s++GK+T+lk + +l   +           ++++  t+r   +  ++++i ++ +   +++++  +++   ++++++er+ +l+++
  EHU00665.1  36 VLLGPSGCGKTTTLKMINRLIPATsgrilingedTNTQDTTTLRR-NIGYVIQQIGLFPNMTIEENITVVPRMlgwDKKQCRERATELMSM 125
                 69****************888666678884444333333333322.223344445555555555555555555666555555555555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   4.7e-05     0.042     126     166 ..      29      70 ..       3      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinksderivt.vEDp 166
                 v +  + ++ G+ g GKtt+l ++   i++++ ri++  ED+
  EHU00665.1  29 VPAGEMCVLLGPSGCGKTTTLKMINRLIPATSGRILInGEDT 70 
                 4466788999*********************88886514666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00016      0.14       4      24 ..      34      53 ..      31      77 .. 0.85
   2 ?   -0.9   0.0       1.3   1.2e+03     113     134 ..     182     203 ..     179     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
      AAA_24  4 kiliyGpsgiGKTtlakelgp 24
                ++++ Gpsg GKTt++k++ +
  EHU00665.1 34 MCVLLGPSGCGKTTTLKMI-N 53
                789**************98.4 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
      AAA_24 113 rllkklqelrknvifiahektr 134
                 ++l++ ++l+k+v +++h   +
  EHU00665.1 182 EFLDMQRQLKKTVMLVSHDIDE 203
                 78999999*********97666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00028      0.25      30      49 ..      29      48 ..       9      51 .. 0.90
   2 ?   -1.4   0.0       1.6   1.5e+03     170     188 ..     181     199 ..     177     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
      AAA_25 30 lpagelallaGapgtGKttl 49
                +page ++l G++g+GKtt 
  EHU00665.1 29 VPAGEMCVLLGPSGCGKTTT 48
                69****************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
      AAA_25 170 ealeriarrtgaavllvhH 188
                 + + +++r+++ +v+lv H
  EHU00665.1 181 NEFLDMQRQLKKTVMLVSH 199
                 567789999********99 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00017      0.15      10      35 ..      32      57 ..      24      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallv 35
                 ++++++++ G+GKT++lk+i +l+ 
  EHU00665.1 32 GEMCVLLGPSGCGKTTTLKMINRLIP 57
                46789999***********9987765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012      0.11       3      58 ..      33      87 ..      31     102 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelile 58
                +++v+ G+  +GKTt lk +i++l+   +  + in +d ++++ ++ ++++ ++ +
  EHU00665.1 33 EMCVLLGPSGCGKTTTLK-MINRLIPATSGRILINGEDTNTQDTTTLRRNIGYVIQ 87
                6789************85.5566665667778899999888776665555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.14      13      45 ..      23      55 ..      20      67 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqal 45
                d+ ++e+   ++++l GpsG GK+T l  i+ l
  EHU00665.1 23 DNVSLEVPAGEMCVLLGPSGCGKTTTLKMINRL 55
                556677765559*************98555544 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00024      0.22      24      52 ..      34      62 ..      19      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00024
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplsee 52
                    +l+Gp+G+GKt   k ++ l+p+ s +
    EHU00665.1 34 MCVLLGPSGCGKTTTLKMINRLIPATSGR 62
                  45789*******************98765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.19      18      72 ..      28      77 ..      20      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_15 18 eidlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenis 72
                e++  e + vl G+ ++GK++ l++++ ++  +    +  i i+ ed+++++ + 
  EHU00665.1 28 EVPAGE-MCVLLGPSGCGKTTTLKMINRLIPAT----SGRILINGEDTNTQDTTT 77
                455566.899*****************999877....788888888888887765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00053      0.48       2      20 ..      35      53 ..      34      72 .. 0.87
   2 ?   -2.9   0.0       8.1   7.3e+03     131     160 ..     173     201 ..     169     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00053
      AAA_28  2 ivitGgestGKTtlleaLa 20
                 v++G++++GKTt+l+ ++
  EHU00665.1 35 CVLLGPSGCGKTTTLKMIN 53
                599***********99776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.1
      AAA_28 131 leereaiderlrealrelgipviivpsgdv 160
                 + +re i++ ++++ r+l   v+ v s d+
  EHU00665.1 173 PINREVIQNEFLDMQRQLKKTVMLV-SHDI 201
                 5567778888888888888888888.7666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2835.86
//
Query:       EHU00666.1  [L=232]
Description: putative dethiobiotin synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-26   93.8   0.0    1.4e-26   93.5   0.0    1.1  1  AAA_26    AAA domain
    3.4e-09   36.9   0.0      5e-09   36.3   0.0    1.2  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0068   15.7   0.1      0.018   14.3   0.0    1.7  2  DUF1611   Domain of unknown function (DUF1611_C) P-loop domai


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   2.4e-30   1.4e-26       1     196 [.       2     207 ..       2     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 2.4e-30
      AAA_26   1 rtifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgie......ededselikellgldqtyelpeplalsaplspelaarqegedidlekiv. 92 
                 +t+f++gtdt+vGKTvvs +L++++ + g++++ +KP++   +      +++d+ +++++ + + +y++ +p++++++      +   + ++  ++i  
  EHU00666.1   2 KTLFIAGTDTEVGKTVVSRALLQSFIQAGFSAAGYKPVARCGVkteeglRNKDALFLQSASSMTLPYQAVNPVIFEKE----EIGGYPPCEVNYARISq 96 
                 79************************************7666645555556699*********************865....45667777777777777 PP

      AAA_26  93 ..kelekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp......envetlekksgip 183
                   k l + ad vvVEG+gg ++  ++ +     + + ++pvilV+ +++g i ++llt+ea    +++++G ++N+  np      e +  l  k + p
  EHU00666.1  97 glKNLHQLADRVVVEGTGGWRSLMNDAQPLSAWVVEQQLPVILVVGIKTGCISHALLTAEAILGDGLPLAGWVANR-INPglahyaEIISVLLDKLPAP 194
                 7799************************************************************************.5776887777899999999*** PP

      AAA_26 184 vlGvvPylpdlea 196
                 +lG++Pylp++e+
  EHU00666.1 195 LLGELPYLPRVEQ 207
                 ********99875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   8.3e-13     5e-09       1     119 [.       4     206 ..       4     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 8.3e-13
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ++ia+t  +vGKT+++ +L++++ ++g+  + ++    +   +  egl+n+ +                                              
  EHU00666.1   4 LFIAGTDTEVGKTVVSRALLQSFIQAGFSAAGYKPVARCGVKT-EEGLRNKDALflqsassmtlpyqavnpvifekeeiggyppcevnyarisqglknl 101
                 579*******************************444444444.6999999999********************************************* PP

                 ........................................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEE CS
                 ........................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ........................................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygvpvlg 110
                                                         ++k  +++ +al +  a l   l +ag+v+nr+++    ++  e +  l+ +++ p+lg
  EHU00666.1 102 hqladrvvvegtggwrslmndaqplsawvveqqlpvilvvGIKT-GCISHALLTAEAILgdgLPLAGWVANRINPG--LAHYAEIISVLLDKLPAPLLG 197
                 ***************************************98877.99999999998888999**************..666667777777788****** PP

                 EEE--CCHC CS
                 xxxxxxxxx RF
        CbiA 111 viprdeava 119
                 ++p+  +v 
  EHU00666.1 198 ELPYLPRVE 206
                 ****98885 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.1e-06     0.018      13      45 ..       2      34 ..       1      38 [. 0.92
   2 ?   -2.4   0.0      0.41   2.4e+03      89      98 ..     106     115 ..      96     145 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-06
     DUF1611 13 krvlvvGTdcavGKrttaleleealeerGlkaa 45
                k +++ GTd +vGK + +++l + + ++G+ aa
  EHU00666.1  2 KTLFIAGTDTEVGKTVVSRALLQSFIQAGFSAA 34
                6789*************************9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.41
     DUF1611  89 dlilveGQgs 98 
                 d ++veG g+
  EHU00666.1 106 DRVVVEGTGG 115
                 5566666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1987.37
//
Query:       EHU00667.1  [L=405]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-51  175.7   0.0    1.8e-51  175.4   0.0    1.1  1  ROK             ROK family
    1.4e-05   24.9   0.5     0.0011   18.8   0.1    2.7  2  MarR_2          MarR family
    0.00011   22.1   0.3    0.00064   19.6   0.0    2.2  2  MarR            MarR family
    0.00055   20.1   0.0     0.0011   19.1   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
  ------ inclusion threshold ------
      0.074   12.6   0.0       0.21   11.2   0.0    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0   4.9e-55   1.8e-51       9     293 ..      95     391 ..      87     392 .. 0.93

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 4.9e-55
                 SEEEEEEEETTS-EEEEEEE...EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS-EEEEE CS
         ROK   9 tkialalvdeegeilarekv...etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvpveven 104
                   ++l+l+d ++  l + ++   + pt+ +  tl+d ++++  + +++++ l a++i +pGli+  sg ++  p  + ++++l ++l++r+++pv++++
  EHU00667.1  95 GTLTLTLRDLSSRALVEDHLplpDDPTQSLLTTLTDHVDAFFIRHQKRLERLTAIAITLPGLINVASGVVHRLPGYNCHDMPLGSTLAARTGLPVFIQH 193
                 5678899999999999999988788999999*******9999999999999************************************************ PP

                 HHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC..........CGT CS
         ROK 105 DvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq..........kge 193
                 D+ a +laE+ fgas ++++vi + +   vGaGvi +g+l++ ++    e+GH+q+dp g++c+CGn+gClEt+as  +l + + q          + +
  EHU00667.1 194 DISAWTLAESLFGASRGAQDVIQIVIDETVGAGVITDGQLLHKSGRALVEVGHTQVDPYGQQCYCGNHGCLETVASTGSLLALVAQrlpgqpdsllHHQ 292
                 ****************************************985555599**********************************9999************ PP

                 TS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHH CS
         ROK 194 kleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgdkagllGaaaLa 291
                 +l+++ ++++a+ gd  a +++  +++++++++  ++n+f+pq i +g  + +a ++l +a+++ ++++ + + ++     +a+ +  + g+lGaaaL+
  EHU00667.1 293 TLTLEAVCEAARAGDRLARDAIATVGHHVGRLLGMMVNIFNPQHILIGSPLNQAADILfPAVQNTIHQQSLPAYSAGI--QLAPTEFTEPGTLGAAALI 389
                 ********************************************************9999999999887766666665..5777788899********9 PP

                 CC CS
         ROK 292 ke 293
                 k+
  EHU00667.1 390 KD 391
                 86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1     3e-07    0.0011      15      55 ..      26      66 ..      18      73 .. 0.82
   2 ?    3.5   0.0     0.019        67      31      52 ..      90     111 ..      88     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3e-07
                HCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE..E CS
      MarR_2 15 grrpgrdltvgelarrlglsksavsrilkrLvaaGLverr..p 55
                  +++  ++  el rr +l ++++++i++++ +a Lv+++   
  EHU00667.1 26 DQHGP--VSRIELSRRAQLAPASITKIVREMLDAHLVQETefQ 66
                45666..8999**************************877443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.019
                 HTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  31 lglsksavsrilkrLvaaGLve 52 
                 l+l +++++ +l++L+++ Lve
  EHU00667.1  90 LRLHRGTLTLTLRDLSSRALVE 111
                 8899*****************9 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.8e-07   0.00064      10      48 ..      23      61 ..      17      64 .. 0.92
   2 ?   -0.8   0.1      0.42   1.5e+03      27      44 ..      90     107 ..      89     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.8e-07
                HHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                r+++++gp s +eL ++ ++ ++++t++++++ ++ l++
  EHU00667.1 23 RLIDQHGPVSRIELSRRAQLAPASITKIVREMLDAHLVQ 61
                789******************************998875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.42
                 HTS-HHHHHHHHHHHHHT CS
        MarR  27 lgvskstvtrvldrLekk 44 
                 l ++++t+t +l+ L  +
  EHU00667.1  90 LRLHRGTLTLTLRDLSSR 107
                 789999***999988665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.1e-07    0.0011      12      53 ..      20      61 ..      19      64 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.1e-07
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                    ++Y+l +++++v++ +l++r + +p+s+++ ++++ ++ +v+
      EHU00667.1 20 VVYRLIDQHGPVSRIELSRRAQLAPASITKIVREMLDAHLVQ 61
                    69*********************************9988875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.9e-05      0.21       9      47 ..      22      60 ..      21      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
      HTH_24  9 LelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                ++l+ +++  s  eL++r  l p+ +++ ++++ ++ l+
  EHU00667.1 22 YRLIDQHGPVSRIELSRRAQLAPASITKIVREMLDAHLV 60
                68999****************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3005.20
//
Query:       EHU00668.1  [L=300]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-45  154.7   3.0    2.1e-45  154.7   3.0    1.7  2  LysR_substrate  LysR substrate binding domain
    1.1e-23   83.0   0.5    2.1e-23   82.0   0.5    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.033     3e+02      20      55 ..      58      91 ..      53      91 .. 0.88
   2 !  154.7   3.0   2.3e-49   2.1e-45       2     207 ..      89     295 ..      88     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.033
                    HHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTS CS
  LysR_substrate 20 llppllarfraryPevelelvegdseelldllaege 55
                     l+p+ ++f++    + l++++++  + +++l++ge
      EHU00668.1 58 QLTPAGQQFLQDARAILLQVEQAT--QRAARLHRGE 91
                    689999*****************9..8888888885 PP

  == domain 2  score: 154.7 bits;  conditional E-value: 2.3e-49
                     TTSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   2 gglrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargep 95 
                     +g++g+Lrig+++++a   ++ ++l  fr+r P+v+++++e ++ ++l  l+eg+lDl+++++ p +++l+ + L++epl++v++++hpLa   +
      EHU00668.1  89 RGEEGELRIGFTSSAAfIGVVSDALYLFRQRWPDVHVQMQEINTRQQLTPLHEGKLDLGVMRNTPLPADLHHQLLLQEPLCAVVHKAHPLASAGK 183
                     6899************99**************************************************************************99* PP

                     ECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                     +sl++La ep+++++++ g  l  +++d+l+++++kp ++ ev ++ ++l+lva GlG+++lp+s+ ++ l +  +v+lpl+ep++ +e++lv+ 
      EHU00668.1 184 ISLQALASEPFVFFDPQVGtaLYSEILDLLQRYQIKPYITQEVGEAMTILGLVATGLGVSILPASFSHARLTN--VVWLPLEEPDALSEMWLVWS 276
                     **************9999999*********************************************8886666..********9999******** PP

                     TTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflrea 207
                     ++re+s ++++++++lr++
      EHU00668.1 277 AQREMSVQMAHMMALLRRE 295
                     ****************986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.5   2.4e-27   2.1e-23       1      60 []       5      64 ..       5      64 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.4e-27
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+lr+f+avaee +f rAA++L++sqp +s+qi  LE+e g++Lf+Rt+r+++LT+aG+
  EHU00668.1  5 LRHLRYFIAVAEELHFGRAAQRLHISQPPLSQQIMHLEAETGAQLFNRTNRSVQLTPAGQ 64
                79*********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2250.56
//
Query:       EHU00669.1  [L=415]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-33  115.8  65.3      8e-25   87.5  30.6    2.1  2  MFS_1       Major Facilitator Superfamily
    9.7e-07   28.0  18.1    9.7e-07   28.0  18.1    2.5  2  Sugar_tr    Sugar (and other) transporter
    0.00069   18.6  15.5     0.0021   17.0   6.2    3.1  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        2.2    8.4   6.0         12    6.0   0.4    2.8  2  DUF2614     Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5  30.6   1.8e-28     8e-25       1     223 [.      40     259 ..      38     269 .. 0.81
   2 !   30.8  33.2   3.2e-11   1.4e-07      10     171 ..     252     408 ..     241     414 .. 0.76

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.8e-28
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+ a++ +++  +++ p+lp  l+ ++g+sp++ ++ l++ +++ a++ l++G+lsd +Gr++v++++l l +++ +l++ + ++w  +l++r+l Gl 
  EHU00669.1  40 LFSAGLATFALLYCVQPLLP-VLSAQFGVSPAASSISLSVSTATLALGLLITGPLSDAVGRKSVMVTALMLASVC-TLISATMTSWhGILLMRALIGLS 136
                 57788889999999******.9*****************************************************.555523567889*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  ++++++g++++++  +++  ++ +gl+ +g+s+G + g l++g+l++ ++Wr++  +++ ++l a+++f+  lp++++ ++++   +      ++ ++
  EHU00669.1 137 LSGVAAVGMTYLSEEIHPSVVAFSMGLYISGNSIGGMSGRLISGVLTDFFSWRVAIAAIGCFALAAALMFWKILPASRHFHPTS--LRP-----RHLAI 228
                 ******************************************************************998444444444444444..444.....34444 PP

       MFS_1 198 pawkallkdpvlw......illialllfffgf 223
                 + +++ ++d  l       +ll++++++ f +
  EHU00669.1 229 N-FRLHWRDAGLPllfaegLLLMGAFVTLFNY 259
                 4.555555554421112333444444443333 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 3.2e-11
       MFS_1  10 larsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpaga 107
                 + + +l+  +   +l+   ++s +++gl l++++l+ +++s+ +G+l+ r+Gr +v+l + l+++ glll +f +     lvl ++  +  +a+f a++
  EHU00669.1 252 A-FVTLFNYIGYrLLGAPWHLSQAVVGL-LSVVYLTGSWSSPKAGALTSRYGRGPVMLGATLIMLTGLLLTAF-HA----LVLIFIGMMLFSAGFFAAH 343
                 2.22333333444777778899999998.566677899*****************************555557.55....4444444444477788888 PP

       MFS_1 108 aliadwfpke...ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlflll 171
                 ++++ w  ++    +g+a +l+  ++ +G+ ++  +gg++ +++gW+++ +++  ++lla+   +++
  EHU00669.1 344 SVASGWIGPRarrAKGQASSLYLFSYYVGSSVAGTAGGFFWHQFGWPGITVFISTLLLLALA--VAW 408
                 8888888885444678999******************************9999999999944..344 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0  18.1   2.2e-10   9.7e-07      48     195 ..      72     214 ..      60     217 .. 0.89
   2 ?    1.1  14.9     0.032   1.4e+02      49     191 ..     273     408 ..     247     412 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.2e-10
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 s++++s+  +  ++G l++g+l+d +GRk+++++a +l++++++++a+ +   s+  ++++R l+G+++ ++ ++  +y+sE  ++++  + ++ly ++
  EHU00669.1  72 SSISLSVSTATLALGLLITGPLSDAVGRKSVMVTALMLASVCTLISATMT---SWHGILLMRALIGLSLSGVAAVGMTYLSEEIHPSVVAFSMGLYISG 167
                 56777777778899************************************...********************************************** PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS---H CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallll.illlflPESP 195
                  ++G + +  +  +l ++ +   wr+ ++    +al+ + +++  lP S 
  EHU00669.1 168 NSIGGMSGRLISGVLTDFFS---WRVAIAAIGCFALAAAlMFWKILPASR 214
                 ********************...999999888888654404445567665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.032
                 HHHHHTHHHHHHHHHHH...HHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslf...agllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                  ++v++++v+ + Gs     ag l+ r+GR +++l a+++++ g +l+a+      + ++++g +l   g  +a  +++ +i+  A  +  g+  sly 
  EHU00669.1 273 QAVVGLLSVVYLTGSWSspkAGALTSRYGRGPVMLGATLIMLTGLLLTAFHA----LVLIFIGMMLFSAGFFAAHSVASGWIGPRARRA-KGQASSLYL 366
                 556666666666666652227999************************9999....9*********99999999999999999888755.489999999 PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpallllilllfl 191
                 +++ +G  va + g ++ +  +     ++    ++++llll+l + +
  EHU00669.1 367 FSYYVGSSVAGTAGGFFWHQFG-----WPGITVFISTLLLLALAVAW 408
                 9999999999888888765555.....56666677777777766665 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.9     2e-06     0.009      12      80 ..      48     116 ..      45     121 .. 0.88
   2 !   17.0   6.2   4.6e-07    0.0021     288     381 ..      98     190 ..      97     194 .. 0.92
   3 ?   -3.9  13.3         1   4.7e+03     280     378 ..     293     388 ..     241     395 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-06
  MFS_1_like  12 faalgsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlfl 80 
                 fa l +++P l +   + g++++ + i +++  +t  l+ +i+g+l+D +g++  +v + +l+s+++++
  EHU00669.1  48 FALLYCVQPLLPVLSAQFGVSPAASSISLSVSTATLALGLLITGPLSDAVGRKSVMVTALMLASVCTLI 116
                 99999*********************************************9877777666666666555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.6e-07
  MFS_1_like 288 GhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaif 381
                 G   ++++al++  +  l+ a+++++  +l++ +L g+s+  + a++++y s+ + +s+ a+ +gl+ +   ++G+ +G li+G+l d +s ++
  EHU00669.1  98 GRKSVMVTALMLASVCTLISATMTSWHGILLMRALIGLSLSGVAAVGMTYLSEEIHPSVVAFSMGLYISG-NSIGGMSGRLISGVLTDFFSWRV 190
                 77889999999999999999999********************************************876.89*************99888665 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1
  MFS_1_like 280 aeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgl.lsglyfglGralGsliGGllwdlk 377
                 a  l+ ++G   +++ a l++   +ll  +++ ++l+++  +L ++ f + +++a  ++    p+  +a+gq+  l  +++ +G+ +   +GG++w ++
  EHU00669.1 293 AGALTSRYGRGPVMLGATLIMLTGLLL-TAFHALVLIFIGMMLFSAGFFAAHSVASGWIG---PRARRAKGQASsLYLFSYYVGSSVAGTAGGFFWHQF 387
                 457999999999888877777666655.5567889999999999999*9******99998...888888888742445667799999999******887 PP

  MFS_1_like 378 s 378
                 +
  EHU00669.1 388 G 388
                 6 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.9     0.011        51      34      66 ..     100     132 ..      80     137 .. 0.87
   2 ?    6.0   0.4    0.0028        12      22      48 ..     311     340 ..     304     358 .. 0.47

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
     DUF2614  34 elllvlflllGlllvlastvvyfwiGllstkav 66 
                 + ++v  l+l  ++ l+s+++  w G+l  +a+
  EHU00669.1 100 KSVMVTALMLASVCTLISATMTSWHGILLMRAL 132
                 56888899999999999**********999986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0028
     DUF2614  22 ivmyigllfkeselllvlf...lllGlllv 48 
                 ++m  gll+ + + l+ +f   +l+   ++
  EHU00669.1 311 LIMLTGLLLTAFHALVLIFigmMLFSAGFF 340
                 445555444444444443311122222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2947.83
//
Query:       EHU00670.1  [L=85]
Description: hypothetical protein CKS_2879 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 691.70
//
Query:       EHU00671.1  [L=181]
Description: cytochrome b561 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-21   77.0  12.7    1.7e-21   76.7  12.7    1.1  1  Ni_hydr_CYTB  Prokaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7  12.7   9.2e-26   1.7e-21       2     182 .]       5     175 ..       4     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 9.2e-26
                   ----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-HHHHHHHHHHHHHHHHHHHHHHH------------STTTSSSSS------------- CS
  Ni_hydr_CYTB   2 yslvarllHWlnallvvllllsgllianlhprlywgdsgkaralHklaGlvllalllfrllwlkkakkpspriifrqikrdltlllrgrkpeagknn 98 
                   y +  ++lHWl++ll ++ +++  l  ++++ ++ ++++     H++aG ++l+++l rll+                       +r+r p+  +  
    EHU00671.1   5 YAASQIALHWLTVLLLIIVYATMELRGYVERGSWQRFVM--TVTHFSAGATILVVMLSRLLLK----------------------IRHRSPAITPPV 77 
                   7788899**********************9999988775..666*******************......................888888877777 PP

                   ---TT.....THHHHHHHHHHHHHHHHHHHTHHHHHHHH.............HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH---X.XXXXX CS
  Ni_hydr_CYTB  99 plqkl.....vhlllyvllvvliltGlllsfaatagfpll..........lddkggaqlarelHellaaallafvvlHiaaallhgpvkkd.tlrrM 179
                   p+++       h+l+y+l++ l++ G++      +g+++l          ++d+ + + +  +He la + ++++ lH+aaal+h++  kd tl rM
    EHU00671.1  78 PRWQTglahlTHTLIYALFISLPVLGIAS--RYLKGREWLlfgipmpvaaEPDFDLSDTLVDWHETLAPLGYWLIGLHVAAALFHHYALKDnTLLRM 172
                   7777777777*******************..66688888888**********************99999999************************* PP

                   XXX CS
  Ni_hydr_CYTB 180 itg 182
                   ++g
    EHU00671.1 173 MPG 175
                   998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1717.18
//
Query:       EHU00672.1  [L=394]
Description: putative arabinose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-30  103.7  59.0    9.2e-30  103.7  59.0    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0022   17.3  36.1     0.0022   17.3  36.1    1.3  1  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7  59.0     1e-33   9.2e-30       1     352 [.      18     349 ..      16     350 .. 0.90
   2 !    9.4   4.9   5.1e-05      0.46     118     177 ..     334     388 ..     324     393 .. 0.61

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1e-33
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l++aaf+  ++ ++   +l+  +a  + +  +e+g++lt+ya++ a++slpl+ l+ ++ rr +l + + lf+++ +l +fa s+  l+v+r+  +l  
  EHU00672.1  18 LAIAAFVFNTTEFVPVGLLS-DIAAGFSMKTAEVGIMLTIYAWVVALLSLPLMLLTRNVERRLLLTVLFSLFVASHVLSTFAWSFSSLIVSRIGIALSH 115
                 46778888888888888888.999***********************************8888999999999999555557778889************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 ++++++ a+l+ +++p  ++++a+++l++g++l+++lg ++g ++ ++lgWr +f ++++ +l+++++ + +lp+ p+e+  + +              
  EHU00672.1 116 AVFWSITASLAIRVAPAGKKTQALSMLATGTALAMVLGVPIGRVVGQALGWRTTFGVIGLSALILMIMLARVLPRLPSEHTGSLSSVP----------- 203
                 *******************************************************************988888888888888855444........... PP

       MFS_1 199 awkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                    +l+++p l  ++l++ l+++ +++++++++  ++q v + s    ++lll l++ +g++++ll++ l +r+++  +ll++ ++l+++++gl+++a+
  EHU00672.1 204 ---LLFRRPALAgMYLLVTLIVT-AHYTAYSYIEPFMQLVANAS-ESFTTLLLLLFGSAGIFGSLLFSSLGKRFPS--ALLISAIALVTLCMGLLIFAA 295
                 ...89999988665666666664.899999999999********.7888888999********************9..********************* PP

       MFS_1 297 tssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                    + +++ ++v++G+++ ++  +++  + +lap +++  a++l++ ++++g+  g
  EHU00672.1 296 V-RPGAIITLCVVWGMAMMMIGLAMQIRVLSLAP-DATDVAMSLMSGIYNIGIGAG 349
                 *.9999999************9999999999997.*****************9887 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 5.1e-05
       MFS_1 118 ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                   +++ g++++g+++Ga+lg  ++ +++ +     v  ++++v+ll+  +  +++++++p
  EHU00672.1 334 AMSLMSGIYNIGIGAGALLGSQVSVYMS-LSDVGNVGAMIGLVALLW--C--VYIFRRYP 388
                 3455666666666666666666666666.444667888888888888..5..45555554 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  36.1   2.5e-07    0.0022      53     359 ..      73     377 ..      60     381 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-07
       MFS_4  53 sagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallfaGvGlGiavsgllvllllqlglsasslW 151
                 ++ + Rl l +   + v++ + + ++ sf+ +++ R++  ++ Av   +++sl+++ a a ++ + +++l  G  l ++++  +   ++ ++l++ ++ 
  EHU00672.1  73 RNVERRLLLTVLFSLFVASHVLSTFAWSFSSLIVSRIGIALSHAVFWSITASLAIRVAPAGKKTQALSMLATGTALAMVLGVPI-GRVVGQALGWRTTF 170
                 445556655555566677788889999999***************************999999***********9988776544.44445567777779 PP

       MFS_4 152 lalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYglaGfGYiit...atFlvaiardgaggalleallWllvGlaaivgvlvwl 247
                  ++++ +++l++++a +lpr ++++  + + +    ++ + +  +ll+  ++ + Y ++     F+ ++a+   +++ ++ ll ll+G a i g l+  
  EHU00672.1 171 GVIGLSALILMIMLARVLPRLPSEHTGSLSSVPLLFRRPALAGMYLLVTLIVTAHYTAYsyiEPFMQLVAN---ASESFTTLLLLLFGSAGIFGSLLFS 266
                 9999999************8888777666555333333333333333333333333332000335555555...4999********************* PP

       MFS_4 248 rvakrsglrralaaallieavgvllsllspsplglivssvllGltflaitalvlq.larelappatrrllglmTasfgigQilGpllasllaeatgsla 345
                  + kr   + ++ a+ l+  +  ll  +   p ++i  +v+ G+++++i  l++q ++  lap+at  +++lm  ++ ig  +G+ll s ++ +  sl+
  EHU00672.1 267 SLGKRFPSALLISAIALVTLCMGLLIFAAVRPGAIITLCVVWGMAMMMI-GLAMQiRVLSLAPDATDVAMSLMSGIYNIGIGAGALLGSQVSVYM-SLS 363
                 *****99988888777777766677777788888999999999987765.67777257899********************9**99988776554.566 PP

       MFS_4 346 lallvaaaalvlaa 359
                  + +v+a + ++a+
  EHU00672.1 364 DVGNVGAMIGLVAL 377
                 67777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.34
# Mc/sec: 3470.88
//
Query:       EHU00673.1  [L=107]
Description: hypothetical protein CKS_2875 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 936.15
//
Query:       EHU00674.1  [L=88]
Description: zinc finger protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-13   50.9   4.5    1.6e-13   50.3   4.5    1.3  1  zf-dskA_traR   Prokaryotic dksA/traR C4-type zinc finger
     0.0035   17.3   1.2     0.0051   16.8   1.2    1.2  1  DZR            Double zinc ribbon
     0.0078   16.1   0.4       0.02   14.8   0.3    1.6  2  C1_1           Phorbol esters/diacylglycerol binding domain (
  ------ inclusion threshold ------
      0.014   15.5   0.8      0.024   14.8   0.8    1.4  1  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (
      0.028   14.3   0.3      0.042   13.8   0.3    1.3  1  DUF4428        Domain of unknown function (DUF4428)
      0.042   12.5   0.2      0.042   12.5   0.2    1.2  1  AAA_13         AAA domain
       0.49   10.2   3.2        9.8    6.0   0.2    2.3  2  zinc_ribbon_2  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   4.5   6.2e-17   1.6e-13       4      35 ..      37      68 ..      32      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 6.2e-17
  zf-dskA_traR  4 gsCeeCGEpIpeaRlralPgarlCveCqekae 35
                    Ce CGEpIpeaR++al g+r+Cv+Cqek++
    EHU00674.1 37 TECELCGEPIPEARRQALKGVRYCVSCQEKID 68
                  34***************************987 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.2     2e-06    0.0051      11      42 ..      35      71 ..      31      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
         DZR 11 darfCseCgtklkavaa.....edrCpsCgekvdpea 42
                +a  C+ Cg++++++ +      + C+sC+ek+d+++
  EHU00674.1 35 SATECELCGEPIPEARRqalkgVRYCVSCQEKIDKQK 71
                5778********977769**************99765 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   7.9e-06      0.02      10      40 ..      35      69 ..      27      70 .. 0.74
   2 !    6.1   0.1    0.0039        10       8      23 ..      54      69 ..      49      77 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
                S--B-TTT-SB-...-SSSS-EEE....ETTT--EE-C CS
        C1_1 10 qptfCkhCgefl...wgkekqglk....CswCkllvHk 40
                + t C+ Cge++   +   +q+lk    C  C+++++k
  EHU00674.1 35 SATECELCGEPIpeaR---RQALKgvryCVSCQEKIDK 69
                6799********5543...444433336*****99987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0039
                -SS--B-TTT-SB--S CS
        C1_1  8 fkqptfCkhCgeflwg 23
                +k   +C  C+e + +
  EHU00674.1 54 LKGVRYCVSCQEKIDK 69
                5677899999999933 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.8   9.2e-06     0.024      15      40 .]      36      64 ..      35      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.2e-06
  Auto_anti-p27 15 aetCpvCgvPLmrdr....kggkvyCvaCd 40
                   a+ C+ Cg P+ + r    k g  yCv+C+
     EHU00674.1 36 ATECELCGEPIPEARrqalK-GVRYCVSCQ 64
                   689****9999999987755.666*****6 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   1.6e-05     0.042       1      38 [.      38      71 ..      38      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
     DUF4428  1 iCaiCgkKigllkrlkleDgyvCkdClkKlseflsdvk 38
                +C +Cg+ i+   r +l+    C +C +K+    +++k
  EHU00674.1 38 ECELCGEPIPEARRQALKGVRYCVSCQEKI----DKQK 71
                6*******************9********8....3333 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.7e-05     0.042     253     275 ..      34      56 ..      12      86 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
      AAA_13 253 assdtCpFCgqplpaerkaaLea 275
                 +s+++C+ Cg+p+p++r++aL+ 
  EHU00674.1  34 ESATECELCGEPIPEARRQALKG 56 
                 3479*****************85 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0038       9.8      13      23 .]      36      46 ..      33      48 .. 0.72
   2 ?    4.6   0.3     0.011        28       1      11 [.      59      69 ..      59      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0038
  zinc_ribbon_2 13 akFCpyCGtpl 23
                   a+ C+ CG+p+
     EHU00674.1 36 ATECELCGEPI 46
                   67788888874 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.011
  zinc_ribbon_2  1 fCpnCGaelqd 11
                   +C +C +++++
     EHU00674.1 59 YCVSCQEKIDK 69
                   8*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 710.66
//
Query:       EHU00675.1  [L=505]
Description: putative carboxylesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-93  314.5   0.0      2e-91  307.4   0.0    2.0  1  COesterase     Carboxylesterase family
    3.3e-08   33.6   1.3    0.00088   19.2   0.1    2.3  2  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.046   12.6   0.0        1.9    7.3   0.0    2.1  2  Say1_Mug180    Steryl acetyl hydrolase


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.4   0.0   3.4e-95     2e-91       6     497 ..       9     477 ..       4     485 .. 0.85

  Alignments for each domain:
  == domain 1  score: 307.4 bits;  conditional E-value: 3.4e-95
                 EETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSSTTSS CS
  COesterase   6 etslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekkeakkk 104
                  ++ G+++G+  +      + +F+GiPYA+pPvg+ R+++P+p +pw+gv++A++fs+a +qn++       + + + sEDCLyLnv+tP+   + +  
  EHU00675.1   9 ALTDGELQGTLDD-----GIFVFKGIPYAAPPVGAYRWRAPQPVKPWHGVLNAQHFSAASWQNRDYCLAIGGGDPGVFSEDCLYLNVWTPE--LQPEVP 100
                 4555777776666.....99*********************************************999999999999*************7..568899 PP

                 EEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-...SSTTSB.S...-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETH CS
  COesterase 105 lPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlst...gdeeap.G...NvGllDqvlALrWVkenIasFGGdpervtlfGesA 194
                 lPV+Vw+hGggf++gs+    y+g+ La++ + +vVt+nYRlG lGF++    ++e+a+ G   N++llDq++ALrWV+++Ia+FGG+ ++vtlfGes+
  EHU00675.1 101 LPVMVWLHGGGFTIGSGGLapYSGKPLASR-GAVVVTLNYRLGHLGFFAHpalEKEQADtGhinNFALLDQIAALRWVQQHIAAFGGNASNVTLFGESS 198
                 9****************8878*********.9****************9988744444322444*********************************** PP

                 HHHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B.--SSS. CS
  COesterase 195 GaasvsllllsplsrglfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPv.vdgdf. 291
                 Ga sv  l  splsrglf++ I+qS+ +l p ++++ ar++   +a+++g     ++  +  lr+ +a+ +   +++         + ++Pv + gd+ 
  EHU00675.1 199 GARSVLSLCCSPLSRGLFHKGIVQSAYSL-PDVTRDAAREKGVMVATALGL---PADASMAQLRELPADAFWPLDSS---------LGLGPVaIAGDMv 284
                 *************************8666.5577888**************...55566899*********999988.........9999999777662 PP

                 SSS-HH..HHHHCGC.CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSTTTSSTCHHHHHHHHHHHHHH CS
  COesterase 292 lpekPe..ellkseg.kvplliGvnkdegllflaylldkeksvkkkeeklsesllkdelyleaekkeelseaikeeytdeadrddaeksrkallelltd 387
                 lp +P   +l++ ++   pl+ G n+de++ ++ + +++ + v + ++                ++    + +++ y     + d++ + +a   ++ d
  EHU00675.1 285 LP-EPVlkTLMAGKQhRLPLMAGSNSDEASVLVWFGVEAAAVVGQLRR----------------NNHFHYRLLRWIYR----TGDDALLGRA---VARD 359
                 66.5644455665559******************99998433222222................13445566777776....4444444544...4567 PP

                 HHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCS.....S-HHHHHHHHHHHHHHHHHHHHSSTTS...TTSS CS
  COesterase 388 vlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekee.....ftkedeklsrkmmtywtnFaktgnPnk...eeee 478
                 ++f +    ++++  ++g p + Y fdy +++s++    g+ hg+e++yv+++  + +       ft++d  +s+++ +yw +Fa   +P+    e+++
  EHU00675.1 360 MTFSIVPWLIMRAQEKAGMPGWRYWFDYVSERSRDLYPHGTWHGNEIPYVMNTLAMMPPAdddrtFTAADHAFSQQVCDYWFRFACDVTPHTtmiEGKQ 458
                 777776677777777***************999996669************997766655589988888****************************** PP

                 ----B.TTTBEEEEESSSS CS
  COesterase 479 kWpkytkeeekylkinlkp 497
                 +Wp+  k+++  ++++ + 
  EHU00675.1 459 RWPAWRKKHDVTMSLGWQG 477
                 *****99999999888766 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   9.5e-06     0.057       1      39 [.     104     141 ..     104     143 .. 0.92
   2 !   19.2   0.1   1.5e-07   0.00088      48      96 ..     166     214 ..     161     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.5e-06
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE--- CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrl 39 
                    +v++HGGGf++gs   +    + la++ gavvv  +Yrl
     EHU00675.1 104 MVWLHGGGFTIGSGGLAPYSGKPLASR-GAVVVTLNYRL 141
                    79**************99999999986.89999*****9 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.5e-07
                    HHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3  48 avedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    a+ d +aalrw++++ +++g ++s+++l+G+S G+  ++ ++    ++g
     EHU00675.1 166 ALLDQIAALRWVQQHIAAFGGNASNVTLFGESSGARSVLSLCCSPLSRG 214
                    67899**********99******************98888777666665 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00031       1.9     109     135 ..      87     114 ..      80     120 .. 0.80
   2 ?    3.0   0.0    0.0061        36     195     214 ..     189     208 ..     166     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00031
  Say1_Mug180 109 wlrkvpetfdPkvD.pvllylHGGgfal 135
                  +l +   + +P+v  pv+++lHGGgf +
   EHU00675.1  87 YLNVWTPELQPEVPlPVMVWLHGGGFTI 114
                  5555555669***99***********86 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0061
  Say1_Mug180 195 knvvvlGdSaGGnlvLslll 214
                   nv+++G+S+G   vLsl  
   EHU00675.1 189 SNVTLFGESSGARSVLSLCC 208
                  69***************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3860.28
//
Query:       EHU00676.1  [L=144]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-15   56.2  10.9    3.9e-15   56.2  10.9    1.7  2  DoxX      DoxX
  ------ inclusion threshold ------
      0.012   15.5   3.7      0.012   15.5   3.2    1.3  1  DoxD      TQO small subunit DoxD


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2  10.9   4.3e-19   3.9e-15       2      84 ..      20      99 ..      19     100 .. 0.95
   2 ?   -1.6   0.2      0.46   4.1e+03       9      18 ..     125     134 ..     117     139 .. 0.60

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.3e-19
        DoxX  2 llllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvh 84
                 lllRl lg+l++ hG  kl + g+  +a  l + gl  p + a+ a ++E++++l+l+ G++tR aA+++av ++vatl+v 
  EHU00676.1 20 KLLLRLTLGGLLLFHGEFKLVH-GVGWIAHLLRQHGL--PGFIAWGAWMGEIIAPLMLIAGFMTRPAAFIIAVNMVVATLLVK 99
                69*******************7.88889999999999..*****************************************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.46
        DoxX   9 lgvlfiahGl 18 
                 l v+f+ +G 
  EHU00676.1 125 LVVMFLGAGR 134
                 4555555554 PP

>> DoxD  TQO small subunit DoxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   3.2   1.4e-06     0.012      75     140 ..      67     137 ..      39     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
        DoxD  75 EiivGlllliGlltRlsslvafa.l...algialsayWlgstcedEyqig..lllvaaelvliltgsgklsl 140
                 Eii+ l+l+ G++tR +++ +++ +   +l +  +a W  +  +  + ++  +l   ++lv+++ g+g+++l
  EHU00676.1  67 EIIAPLMLIAGFMTRPAAFIIAVnMvvaTLLVKTGAVWHRT-DVGAWALEteALYLFGALVVMFLGAGRFTL 137
                 9**************8886654313000344445899*988.78899885337999*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1252.10
//
Query:       EHU00677.1  [L=446]
Description: uncharacterized DUF1338 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.9e-115  383.7   0.1     8e-115  383.5   0.1    1.0  1  DUF1338   Domain of unknown function (DUF1338)


Domain annotation for each model (and alignments):
>> DUF1338  Domain of unknown function (DUF1338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.5   0.1  4.4e-119    8e-115       2     324 .]      10     399 ..       9     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 383.5 bits;  conditional E-value: 4.4e-119
     DUF1338   2 laralldalsekYlarvpkvralvelvraanaaslssegek......tdelerllvedHgAiRtggvtnegidalarlfaslGyvpvgeydlpekklpa 94 
                 +++ +++a+s++Y+++vp++++l++lv+a+n+a+l+++++        del+rl +e+HgAiR+g  ++ ++++l+++fa++G+ pvg+ydl+++++p+
  EHU00677.1  10 IRTGFSQAMSDMYQQEVPLYGTLMQLVKAVNEATLTADSVLeqrltqADELSRLSLERHGAIRVG--SADELAMLRQMFAVMGMFPVGYYDLSQAGVPV 106
                 7899**********************************9988999888889**************..******************************** PP

     DUF1338  95 hwtaFrpp.eedlaknlpRvFiSeLrvedlsdaaqraieayvlaareiftkrllellekleedggltagdaeafvaealetfrwqkeapvakadyelLa 192
                 h+taFrp+ +e+l++n++R+F+S+Lr+e++ d a+r+ +a++la+r+ift+++ +l++ ++++gglta +a+af++ealetfrw++++ v+  +y++L+
  EHU00677.1 107 HSTAFRPIdDEALQRNPFRIFTSLLRLELIADPALRDEAARILASRDIFTPECRNLIALHQQQGGLTAPQAQAFINEALETFRWHSHSLVESRTYQALN 205
                 *********99**************************************************************************************** PP

     DUF1338 193 aeseyaAwvl.vngyaiNHlTprvldidalqafleergiklkdeieGpptvspdglLrQtSfkAleeevkfaegsgeevgavparfgEieqRgvlltnk 290
                 ++++++A+v+ +  ++iNHlTpr+ldid++qa + + gi++k +ieGpp+++ ++lLrQtSfkAlee+v f   +g +  +++arfgEieqRg++lt++
  EHU00677.1 206 QQHRLIADVVcFPACHINHLTPRTLDIDRVQALMPTYGIDPKTVIEGPPRRKVPVLLRQTSFKALEEPVIFT--DGFQG-THTARFGEIEQRGAALTPQ 301
                 ************************************************************************..88887.******************* PP

     DUF1338 291 grnlydellkea................................................................gepilyedFlpgnAagIFestl 324
                 gr+lyd+ll+ea                                                                ++pi+yedFlp++AagIF+s+l
  EHU00677.1 302 GRALYDRLLSEAgsgadnqqhqqqltatfaafpddenalreaglawftyrlsekgraeppqrgeslaslieqgrilADPIIYEDFLPVSAAGIFQSNL 399
                 *******************************************************************9999865544*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.32
# Mc/sec: 4124.63
//
Query:       EHU00678.1  [L=446]
Description: 4-hydroxybenzoate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-47  161.4  62.5    7.4e-34  117.2  29.3    2.0  2  MFS_1       Major Facilitator Superfamily
    1.8e-30  106.2  30.7    1.7e-26   93.1   7.0    2.1  2  Sugar_tr    Sugar (and other) transporter
      4e-10   39.5  34.8    4.1e-10   39.5   9.9    2.1  2  MFS_4       Uncharacterised MFS-type transporter YbfB
    2.9e-05   23.3   1.8    2.9e-05   23.3   1.8    3.4  3  PUCC        PUCC protein
    0.00032   19.7  16.6      0.032   13.1   0.1    2.4  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        3.5    5.8  19.2       0.86    7.8   3.1    3.0  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2  29.3   2.5e-37   7.4e-34       2     241 ..      30     292 ..      29     293 .. 0.84
   2 !   54.6  33.4   2.6e-18   7.8e-15       1     170 [.     264     432 ..     264     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 2.5e-37
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++++l ++++++ g+++p +l+++ ++s +++g ++++  +g a++++++G+l+drfGrr ++++++l+f+l++l+ +f++s+  ++++r+l+Glg g
  EHU00678.1  30 FIVVALDGMDIALMGFIAP-TLKTAWHVSTHQLGVVISAALIGLALGAMVAGPLADRFGRRLMIIFSVLFFGLWTLVTAFSHSIEQMILFRFLTGLGLG 127
                 8999***************.******************************************************77777967777************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 a++p++ al+a+++p+++r++ i ++  gf +Ga+ g  ++++l+  + W++v ++ +i+ ll++   +l    +++ r   s                
  EHU00678.1 128 AAMPNVSALVAEYAPERRRSFIITVVFCGFTFGAASGGFAASWLLPRYDWHSVLLLGGILPLLVLP--VLIRQLPESVRFLISRGAPAqhiraileril 224
                 ****************************************************************44..3555333333333333333377777777777 PP

       MFS_1 189 ............kgtgpaplvp.........awkallkdpvlw...illialllfffgfsglltllplylqevlgls 241
                                      +         a+  + ++++     +l+ + +++ f ++++ ++lp++ + + g+s
  EHU00678.1 225 pgstspdthfhaT--------EaekspaehsAIATVISPRYRIgslMLWGGYFMGLFLVYLIGSWLPSL-VNTQGMS 292
                 7777665555542........1222223336577788888663566899999999999999*******5.9999887 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 2.6e-18
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlg 98 
                 l+ ++f+  +  +++g++lp  l ++ g+s++e+ +++++y +g  ++sl++G+l+drf +   l + +++ ++++++l f+ +++ ++ +  + +G++
  EHU00678.1 264 LWGGYFMGLFLVYLIGSWLP-SLVNTQGMSVTEAAIITAMYQAGGTLGSLFAGWLMDRFNASLSLAVIYFCGGIAIVALGFSpPQVVIMSAIAFCSGFC 361
                 57799***************.999999********************************99999999999999996666698677779*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfll 170
                   +++++++al a ++p   r+ + +++ +   +Gail + +g+ ++   ++++++f++lai +ll  v+  l
  EHU00678.1 362 FNGANTGMNALSASYYPTHARATGSSWMHGVGRIGAILSAFVGAEMLsLGWSFSVIFLLLAIPALLTTVM--L 432
                 ********************************************777255559999***********996..3 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   7.0   5.7e-30   1.7e-26      44     278 ..      57     280 ..      25     299 .. 0.80
   2 !   15.2  20.8   2.4e-06    0.0072      44     189 ..     292     432 ..     260     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 5.7e-30
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s+ ++g++ s++l+G ++G+++ag+l+drfGR+  +++++++f   ++++a+++   s+e++i+ R+l+G+g+G+a   v+ +++E+Ap++ R++++++
  EHU00678.1  57 STHQLGVVISAALIGLALGAMVAGPLADRFGRRLMIIFSVLFFGLWTLVTAFSH---SIEQMILFRFLTGLGLGAAMPNVSALVAEYAPERRRSFIITV 152
                 67789*************************************************...****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HH.HHHHHHHH.HHHCHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgkee.eakevlak.lrgeedadrelaeekdsleaeqeee 238
                    + tfG   + +    l    +   w+  l l  +++ll+l +l   lPES r+l+++g      +++l++ l g++ +d  + +  ++   ++   
  EHU00678.1 153 VFCGFTFGAASGGFAASWLLPRYD---WHSVLLLGGILPLLVLPVLiRQLPESVRFLISRGAPAqHIRAILERiLPGSTSPDTHFHATEAEKSPAE--- 245
                 ********9988877777766667...9******999999988665278************99978899999977777666666654433333331... PP

                 ...HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTT CS
    Sugar_tr 239 kaswkellssktvrqrlligvvlqifqqltGinaimyysp 278
                 +  + +++s      r  ig ++ ++  + G + ++ +++
  EHU00678.1 246 HSAIATVIS-----PRYRIGSLMLWGGYFMGLFLVYLIGS 280
                 122333333.....47788888888888888888777664 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.4e-06
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s +   +i++++++G+++Gslfag+l+drf    sl+++ ++  i++v  ++++   +v ++ +  + +G++  +a++ +  + + + p++ R +  s+
  EHU00678.1 292 SVTEAAIITAMYQAGGTLGSLFAGWLMDRFNASLSLAVIYFCGGIAIVALGFSP--PQVVIMSAIAFCSGFCFNGANTGMNALSASYYPTHARATGSSW 388
                 4456789***********************************************..66888888899******************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                       +G +++a++g+ +   +    + + + l ++pall  + +l
  EHU00678.1 389 MHGVGRIGAILSAFVGAEMLSLGW--SFSVIFLLLAIPALLTTV-ML 432
                 *****************9955544..6************65544.44 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   9.9   1.4e-13   4.1e-10      15     170 ..      46     200 ..      41     224 .. 0.84
   2 !    6.0  16.9    0.0022       6.4      15     167 ..     281     434 ..     270     441 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.4e-13
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                 i P l ++ ++s  q+g + +a ++G  +Ga++a   + +   Rl++  ++l   l +l  a+ +s+  ++l Rfl+G++ ++++  +s+lv + a + 
  EHU00678.1  46 IAPTLKTAWHVSTHQLGVVISAALIGLALGAMVAGPLADRFGRRLMIIFSVLFFGLWTLVTAFSHSIEQMILFRFLTGLGLGAAMPNVSALVAEYAPER 144
                 66999999**************************8888888899999999999********************************************** PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllp 170
                 rr++++ ++f+G  +G a +g +++ ll    +++s+ l+ ++l +++l +++  lp
  EHU00678.1 145 RRSFIITVVFCGFTFGAASGGFAASWLLP-RYDWHSVLLLGGILPLLVLPVLIRQLP 200
                 ****************9988888765554.344444556666666666555555555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0022
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamalt.esfaaflliRflaGvasAvvlvfgsslvlahaaa 112
                  LP l++++++s+++a+++ a+  +G  +G+l+a   + + ++ l l +  +   ++++a ++   +++++++i f +G     +   + +l+ +   +
  EHU00678.1 281 WLPSLVNTQGMSVTEAAIITAMYQAGGTLGSLFAGWLMDRFNASLSLAVIYFCGGIAIVALGFSpPQVVIMSAIAFCSGFCFNGANTGMNALSASY-YP 378
                 69********************************766667777777888888889999999986156778899******98766666666666555.45 PP

       MFS_4 113 arrervgallfaGvG.lGiavsgllvllllqlglsasslWlalavlsavllllval 167
                 + + + g+    GvG +G ++s+ + + +l lg+s s++ l+la+ +++ ++++a+
  EHU00678.1 379 THARATGSSWMHGVGrIGAILSAFVGAEMLSLGWSFSVIFLLLAIPALLTTVMLAV 434
                 55666677777899989*********************************999986 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   3.0      0.19   5.7e+02     280     350 ..      37     111 ..      13     116 .. 0.59
   2 !   23.3   1.8   9.7e-09   2.9e-05      65     154 ..      91     178 ..      74     201 .. 0.75
   3 ?   -1.2  11.5      0.27     8e+02     239     321 ..     290     374 ..     286     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
        PUCC 280 gvllgllsflllil..aallen.vallvagvlllGlasGlfavaaltlmldlaaeerag.lalGaWGaaQaiaag 350
                 g+ ++l++f++ +l  a+ ++  +  +v +++l+Gla G + ++ l+  +        + l+ G+W ++ a + +
  EHU00678.1  37 GMDIALMGFIAPTLktAWHVSThQLGVVISAALIGLALGAMVAGPLADRFGRRLMIIFSvLFFGLWTLVTAFSHS 111
                 555555555553330033333324445666677777777777777766665555554445788888888877765 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 9.7e-09
        PUCC  65 iaplalivlsgkgeaeaaatwaglilaavafllvGlgvslsqTallALladlaeeeerpkvvgllyvmlligivvsaivvgallkdytea 154
                 ++ ++++++++   +  +a++ +    ++   l Glg+++    + AL+a+ a e++r+ +++++++ +++g + + ++ ++ll  y+ +
  EHU00678.1  91 MIIFSVLFFGLW--TLVTAFSHSIEQMILFRFLTGLGLGAAMPNVSALVAEYAPERRRSFIITVVFCGFTFGAASGGFAASWLLPRYDWH 178
                 444556666652..22234444444444444689**************************************************998754 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.27
        PUCC 239 gLtvgeTTkLtalfalGtlvGlllaglvlsrglkkarlaslgvllgllsflllila...allenvallvagvlllGlasGlfavaa 321
                 g+ v+e   +ta++  G+ +G l ag+++ r     +la++   +g+ ++++l ++   +++ +  ++ +g ++ G  +G+ a +a
  EHU00678.1 290 GMSVTEAAIITAMYQAGGTLGSLFAGWLMDRFNASLSLAVIYFCGGI-AIVALGFSppqVVIMSAIAFCSGFCFNGANTGMNALSA 374
                 7899999*********************9977777777776655544.45555555111345567888888888898889887765 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7  10.5   0.00012      0.34     226     370 ..      24     168 ..      18     177 .. 0.87
   2 !   13.1   0.1   1.1e-05     0.032      25      86 ..     285     345 ..     270     353 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
  MFS_1_like 226 eviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLh 323
                 ++i+++++++ l  +  ++  F+   L      s+  lG+++    ++     ++a  l +++G + ++i+++l++ l  l+ a+ ++   ++++ +L 
  EHU00678.1  24 RLIVLCFIVVALDGMDIALMGFIAPTLkTAWHVSTHQLGVVISAALIGLALGAMVAGPLADRFGRRLMIIFSVLFFGLWTLVTAFSHSIEQMILFRFLT 122
                 67888888888888888888898888866678899999999999999999999*********************999977777777************* PP

  MFS_1_like 324 gisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliG 370
                 g+ +g+    +   v++ ap++ +++++ ++    f +G a+G +++
  EHU00678.1 123 GLGLGAAMPNVSALVAEYAPERRRSFIITVVF-CGFTFGAASGGFAA 168
                 **************************999764.45777888887765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.1e-05
  MFS_1_like  25 ylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfip 86 
                   + +g+++ e +iit++  +   l++++ g+l Drf++   ++++  +  + + ++l f p
  EHU00678.1 285 LVNTQGMSVTEAAIITAMYQAGGTLGSLFAGWLMDRFNASLSLAVIYFCGGI-AIVALGFSP 345
                 46899**********************************9997766543333.333344545 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1   0.00029      0.86       3      90 ..      25     113 ..      23     119 .. 0.93
   2 ?    2.1   0.2     0.015        45     135     195 ..     115     175 ..     109     183 .. 0.85
   3 ?    4.5   4.3    0.0029       8.7     316     379 ..     281     343 ..     262     375 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00029
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvllsllglvq.amvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalPhfis 90 
                 l++l++++++  +m  +++  +  t+   ++ ++ + g++ s+  ig +l +++ + +++r  r  +i +++l+++l +l++a+ h i 
  EHU00678.1  25 LIVLCFIVVALdGMDIALMGFIAPTLKTAWHVSTHQLGVVISAALIGLALGAMVAGPLADRFGRRLMIIFSVLFFGLWTLVTAFSHSIE 113
                 567787777777************************************************************************99875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.015
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 135 fflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllkly 195
                 ++l  +l G+G  + ++   + + +++ +++ ++ + ++++  ++G a G + +s ll  y
  EHU00678.1 115 MILFRFLTGLGLGAAMPNVSALVAEYAPERRRSFIITVVFCGFTFGAASGGFAASWLLPRY 175
                 56667889999999999999999**************************988888887666 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0029
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
        OATP 316 FlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklakl.vlvvsllslll 379
                 +lp  + tq ++s +eA+++t+++   g++lG l++G+l+ +++ s + ++ + +  +++++l +
  EHU00678.1 281 WLPSLVNTQ-GMSVTEAAIITAMYQ-AGGTLGSLFAGWLMDRFNASLSLAVIYfCGGIAIVALGF 343
                 556666665.788899999987765.6889****************9865554044444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 1993.31
//
Query:       EHU00679.1  [L=306]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-34  118.9   0.5    3.4e-34  118.1   0.5    1.3  1  LysR_substrate   LysR substrate binding domain
    5.7e-19   67.8   3.0    1.8e-18   66.2   3.0    1.9  1  HTH_1            Bacterial regulatory helix-turn-helix protei
     0.0087   16.1   0.4      0.034   14.2   0.4    2.0  1  HTH_20           Helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   14.3   0.1      0.054   13.5   0.1    1.3  1  DiSB-ORF2_chro   Putative virion glycoprotein of insect virus
      0.033   14.0   0.2      0.068   13.0   0.2    1.5  1  HTH_30           PucR C-terminal helix-turn-helix domain
        0.1   11.4   0.0       0.35    9.6   0.0    1.7  2  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.5   1.1e-37   3.4e-34       8     206 ..     103     303 ..      98     305 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 1.1e-37
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGG CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsled 100
                     +r+ga +t+a   lp++l rf+++ P+ ++++ + +++ ll++l++ge+Dl+i +       +gl+++ L+ e l lv++p+hpL     v+l+ 
      EHU00679.1 103 IRLGALTTAAMGMLPQILDRFHQLRPNTTIQVATLHNNVLLAGLRAGEFDLGIGRMADkeMMTGLTYELLFLESLKLVVRPEHPLLSD-NVTLSR 196
                     8*******************************************************9999***************************8.899*** PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCH CS
  LysR_substrate 101 Ladeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrels 194
                       ++p +  +eg++ r+l+++ l+e+g ++    +e++s++ +++l++  + i ++p+ av+++l ++ l+ lp+  p +  ++++++r g  ls
      EHU00679.1 197 AMQWPVVISPEGTAPRRLAQQMLDEQGCSLpPHCVETSSTSLARQLALRYDYIWFVPSGAVKEDLSHNALISLPITSPGPGEPVGIITRTGNTLS 291
                     ****************************9978889******************************************8888************** PP

                     HHHHHHHHHHHH CS
  LysR_substrate 195 pavrafidflre 206
                       ++ ++  +r+
      EHU00679.1 292 LSAEVLMSTIRK 303
                     *******99875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   3.0     6e-22   1.8e-18       1      60 []      13      72 ..      13      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 6e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSS.EEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgr.glrLTeaGe 60
                lr+l++fvava++g++ rAAe L lsqpa+s+ +++LEe+ gv+LfeR gr g++LT  Ge
  EHU00679.1 13 LRHLHAFVAVAQQGTLGRAAETLSLSQPALSKTLNELEELTGVRLFER-GRlGAQLTTMGE 72
                79**********************************************.7779****9996 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   1.2e-05     0.034      16      50 ..      13      51 ..      10      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                HHHH....STCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20 16 lraL....araegltaselaerldlskntlsyHLrvLee 50
                lr+L    a a+  t++  ae+l+ls+  ls+ L++Lee
  EHU00679.1 13 LRHLhafvAVAQQGTLGRAAETLSLSQPALSKTLNELEE 51
                67777778999999************************9 PP

>> DiSB-ORF2_chro  Putative virion glycoprotein of insect viruses
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.054      21      39 ..     222     240 ..     221     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
  DiSB-ORF2_chro  21 qeCtLPPnCsdvsvvildk 39 
                     q+C+LPP+C + s + l +
      EHU00679.1 222 QGCSLPPHCVETSSTSLAR 240
                     79*********99888765 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.3e-05     0.068      10      44 ..      23      57 ..      13      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgldl 44
                +++g + ++A++L ++   l++ L+ +eel+g+ l
  EHU00679.1 23 AQQGTLGRAAETLSLSQPALSKTLNELEELTGVRL 57
                678999**************************987 PP

>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00012      0.35     150     188 ..      28      69 ..       7      89 .. 0.83
   2 ?   -1.1   0.0       0.2   5.9e+02      49      72 ..     203     226 ..     193     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00012
                      E--TTSEE-..-HHHHHHHHHHHH.HTTHHHHSSHHHHHHHH CS
  G_glu_transpept 150 vlkagellk..qpalAktLerlae.eGaeaFYkGelAeklva 188
                        +a e+l   qpal+ktL++l e +G++ F +G+l+ +l  
       EHU00679.1  28 LGRAAETLSlsQPALSKTLNELEElTGVRLFERGRLGAQLTT 69 
                      55555555444*************9*************9976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
                      EEEE--BB-TT--TTTTTSCBCCH CS
  G_glu_transpept  49 aldaretAPaaatkdmfdkegdsk 72 
                      ++   +tAP+ ++++m+d++g+s 
       EHU00679.1 203 VISPEGTAPRRLAQQMLDEQGCSL 226
                      677889***********8887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2389.11
//
Query:       EHU00680.1  [L=188]
Description: DNA endonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-17   61.9   0.0    8.2e-17   61.3   0.0    1.3  1  Smr       Smr domain


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   4.6e-21   8.2e-17       2      80 .]      90     170 ..      89     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 4.6e-21
                 E-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTS..TTHCHHHHHHHHHHHCSTTEEEEEE--CCCTGGGEEEEEE- CS
         Smr   2 DLhglrraealnvletfldaasakglrsvevihGkGah..agvgvLrpavmgwLagkeaveafreaekkeGgkGavvVlLk 80 
                 +L    ++ +++ l tf+++ +++g+r++++ihGkG+   +++ + r+ + +wL++ ++v+ f+ a+k++Gg+Ga++V+L+
  EHU00680.1  90 NLLRQPVETCRQNLFTFMQDVRKAGYRNLLIIHGKGRDndSHANIVRSYLDRWLREFDDVQTFCVAQKQHGGSGALYVGLR 170
                 5666678999***************************95444*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1516.43
//
Query:       EHU00681.1  [L=246]
Description: DNA-binding transcriptional dual regulator, global regulator of anaerobic growth [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-17   62.2   0.0    7.7e-17   61.2   0.0    1.5  1  cNMP_binding  Cyclic nucleotide-binding domain
    5.1e-16   58.4   0.1    8.5e-16   57.7   0.1    1.4  1  HTH_Crp_2     Crp-like helix-turn-helix domain
    6.2e-16   57.8   0.5      1e-15   57.1   0.5    1.4  1  Crp           Bacterial regulatory proteins, crp family
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.047   13.6   0.0    1.5  1  MarR_2        MarR family
       0.19   10.8   0.0       0.23   10.4   0.0    1.1  1  Med1          Mediator of RNA polymerase II transcription sub


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.1e-20   7.7e-17       3      85 ..      47     128 ..      45     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2.1e-20
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflel 85 
                    +++g+++f++Gd+ +sly ++sG+++ y+++e+g+e++++++ +Gdl+G  a+++ ++++  ++Al+++ ++++p d++++l
    EHU00681.1  47 PIQKGHTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIMN-ASHPSFAQALETAMVCEIPFDTLDDL 128
                   679****************************************************9.99********************9987 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1   2.4e-19   8.5e-16       1      68 []     164     238 ..     164     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.4e-19
                 HHHHHHHHHHHCTTT..C....EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEES-HHHHHHH CS
   HTH_Crp_2   1 qRlArfLlrlaerag..g....eielpltqeelAsmlGltretvsrilseLkreglis.rgrririldleaLral 68 
                 +RlA+f ++l++r g  g    e++l +t+ +++++lGlt et+sr+l+++++ g++  +g+ i+i + ++L+al
  EHU00681.1 164 ERLAAFVWNLSRRYGqrGfsqrEFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAvKGKYITIENHAMLEAL 238
                 7*********88854333556899**********************************76744*********985 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.5   2.9e-19     1e-15       1      32 []     189     220 ..     189     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.9e-19
                 EE--HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp   1 LpmSRqdIAdylGlTrETVSRlLtrLrekGLI 32 
                 L+m+R dI++ylGlT+ET+SRlL+r++++G++
  EHU00681.1 189 LTMTRGDIGNYLGLTVETISRLLGRFQKSGML 220
                 89****************************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.047      21      51 ..     190     220 ..     170     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
                 EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  21 dltvgelarrlglsksavsrilkrLvaaGLv 51 
                  +t g++  +lgl+  ++sr+l r+++ G++
  EHU00681.1 190 TMTRGDIGNYLGLTVETISRLLGRFQKSGML 220
                 4699*************************87 PP

>> Med1  Mediator of RNA polymerase II transcription subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.5e-05      0.23     365     404 ..      84     139 ..      32     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.5e-05
        Med1 365 hsytfqitkdlpg...............l.gitvkelpFshPrqlpeiLpiLRqya 404
                 + + f+++ dl+g               l  ++v e+pF  +++l+  +p LRq++
  EHU00681.1  84 QITGFHLAGDLVGfdaimnashpsfaqaLeTAMVCEIPFDTLDDLSGKMPALRQQM 139
                 44566666666667777777777777774478**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1881.39
//
Query:       EHU00682.1  [L=317]
Description: stress-induced protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-33  114.1   0.1    1.4e-18   67.8   0.0    2.2  2  Usp            Universal stress protein family
  ------ inclusion threshold ------
       0.22   10.6   0.0        0.3   10.2   0.0    1.1  1  Malectin_like  Malectin-like domain


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   1.5e-22   1.4e-18       2     141 .]       4     146 ..       3     146 .. 0.97
   2 !   44.4   0.1   2.5e-15   2.3e-11      16     141 .]     174     300 ..     156     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.5e-22
                 -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH...HHHHHHCTTCEEEEEEEESSHHHHHHH CS
         Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada...akaaaeaggvkvevvveegdpaeeile 97 
                 y++IlVa+D  ++ + Al++A+ l +  g+++ +   i +++++++  + ++++++  +    ++ +     a+a ++ag+ +   v+++  p e+i++
  EHU00682.1   4 YQNILVAIDPQQDDQPALRRAVYLNQLIGGKIKAFLPIYDFSYEMTTLLSPDERTAMRQGVISQRSEWIreqAQAYLDAGVDIDIKVIWHNRPYEAIIQ 102
                 99*****************************************************99999999888777999*************************** PP

                 HHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  98 vaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 ++ +++ dl++  ++++++l+ +++  + + +lr++pcpV++V+
  EHU00682.1 103 EVLAHQHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPCPVWMVK 146
                 *******************************************8 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 2.5e-15
                 HHHHHHHHHHHHH.CTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCC CS
         Usp  16 kkAlewAlelaka.rgaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeedadliVvGsrg 113
                 +k+++  ++la++ +++e++l+ + +  +   + ++++  +    +  + +   ++++ +++  + ++ ++ve g p e+i e+   ++a ++V+G+ g
  EHU00682.1 174 QKLIRETVKLAESvNHTEVHLVGAYPITPINIAIELPDFDPSVYNDAIRGQHLVAMKALRQKFSISEEFTHVEKGLPEEVIPELSAHLGAGIVVLGTIG 272
                 6788888999999888998888888887777777777666666666666666555688999************************************** PP

                 SSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 114 rsglsrlllGSvseyvlrhapcpVlvVr 141
                 r+gls ++lG+++e+v+ h  c++l+++
  EHU00682.1 273 RTGLSAAFLGNTAEQVIDHLRCDLLAIK 300
                 *************************987 PP

>> Malectin_like  Malectin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   3.3e-05       0.3     113     176 ..     168     237 ..     152     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.3e-05
  Malectin_like 113 k.....esvvkEiihvpks.dslqvcLvktgtgtPfIsaLElrplknslYpstesgqslaLklvaRlnfg 176
                    +     +++++E +++++s ++ +v Lv     tP+  a+El  +++s+Y+ +  gq l+ + + R +f+
     EHU00682.1 168 HhdalnQKLIRETVKLAESvNHTEVHLVGAYPITPINIAIELPDFDPSVYNDAIRGQHLVAMKALRQKFS 237
                    344555799***88888877******************************77777777554555565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2492.76
//
Query:       EHU00683.1  [L=462]
Description: pyridine nucleotide transhydrogenase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-203  675.3  16.9   5.2e-203  675.1  16.9    1.0  1  PNTB             NAD(P) transhydrogenase beta subunit
     0.0023   18.3   1.1     0.0069   16.7   1.1    1.9  1  TraA             TraA
  ------ inclusion threshold ------
      0.021   14.6   0.8       0.13   12.0   0.1    2.6  3  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
       0.57   10.3   0.1       0.57   10.3   0.1    5.3  6  DUF4229          Protein of unknown function (DUF4229)


Domain annotation for each model (and alignments):
>> PNTB  NAD(P) transhydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  675.1  16.9  1.2e-206  5.2e-203       2     459 ..       7     460 ..       6     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 675.1 bits;  conditional E-value: 1.2e-206
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PNTB   2 elaylvaallfilglkglsspktarrgnllgavgmllavvatlllllkeaaseelalillalvigaviGlllakkvemtemPqlvallnslvGlAavlv 100
                 ++ay+vaa+lfi++l+gls+ +t+r+gn++g+ gm++a++a+  ++  ++  +++ +illa+vig++iG+ lak+vemtemP+lva+l+s+vGlAavlv
  EHU00683.1   7 TAAYIVAAILFIMSLAGLSKYETSRQGNIFGISGMAIALIAS--VFGPDS--SHVVWILLAMVIGGAIGIRLAKRVEMTEMPELVAILHSFVGLAAVLV 101
                 689***************************************..454444..45899****************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X.............XXXXXXXX CS
        PNTB 101 alaelleeeaekaeealeavelvelvlgvliGavtftGslvAflKLqgllsskplklpgrkllnlllllalvvllvlfvla....asslllllllvlal 195
                 +++++++++     + +e+++l e+++g++iGavtftGslvAf+KL g+lss+pl+lp+r+ lnll+l+++++ll++fv++    a+ ++l+++l++al
  EHU00683.1 102 GINSYVDHAPGL-PAVIENIHLSEVFIGIFIGAVTFTGSLVAFGKLCGKLSSRPLMLPQRHKLNLLALVVSFLLLLWFVNTqslgAQVFALVIMLIIAL 199
                 *******98755.679*************************************************************999888777777779******* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X--S-EES CS
        PNTB 196 llGvllvlpiggaDmpvvisllnsysGlaaaaaGfvlenklLiivGalvgasGaiLsyimckamNrsllnvllggfgaaassekaeeeekeekevkeis 294
                 ++G++lv++iggaDmpvv+s+lnsysG+aaaaaGf+l+n+lLi++Galvg+sGaiLsyimckamNrs+++v++ggfg++ ++++a   ++e+ e++eis
  EHU00683.1 200 AFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGSDGTASTA---SDETGEHREIS 295
                 ****************************************************************************543333333...335669***** PP

                 HHHHHHHHHC-SEEEEEE-HHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHCCGGGG-SEEEEES-SCCC CS
        PNTB 295 aedvaellkeakkviivPGYGlavaqAqhavaelaklLeekgveVkfaiHPvAGRmPGhmnVLLAeadvpydkvlemdeineefaetDvalViGAnDvv 393
                 +e++ae+l+++++vii+PGYG+avaqAq+ vae++++L+++g++V+f+iHPvAGR+PGhmnVLLAea+vpyd vlemdein++f++tD +lViGAnD+v
  EHU00683.1 296 TEETAEMLRSSRSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDEINDDFSDTDTVLVIGANDTV 394
                 *************************************************************************************************** PP

                 -CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTT--S-GGGGSTTEEEEES-HHHHHHHHHH CS
        PNTB 394 npaakedpnspiagmPvlevekakkvivlkrslasGYagveNplFykentsmlfgdakksleellk 459
                 npaa++dp+spiagmPvlev+ka++viv+krs+++GYagv+NplF+kent+mlfgdak+s+e++lk
  EHU00683.1 395 NPAAQDDPGSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVESILK 460
                 ***************************************************************987 PP

>> TraA  TraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.1   1.5e-06    0.0069      66     104 ..      44      82 ..       5     101 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
        TraA  66 atvkatfgkdssvvkwvvlaevlvgavmymmtknvkfla 104
                 a + + fg dss v w++la v+ ga+   ++k v +  
  EHU00683.1  44 ALIASVFGPDSSHVVWILLAMVIGGAIGIRLAKRVEMTE 82 
                 457889*************************99998754 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.98   4.4e+03      68      86 ..     228     246 ..     213     253 .. 0.73
   2 ?   12.0   0.1   2.9e-05      0.13       2      87 ..     297     391 ..     296     407 .. 0.88
   3 ?   -1.8   0.0      0.51   2.3e+03      39      66 ..     408     435 ..     406     451 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.98
                   CHHHHHHHHH-SEEEEES- CS
  TPP_enzyme_M  68 skaanealeeaDlvlalGa 86 
                   ++aa   + + Dl+++ Ga
    EHU00683.1 228 AAAAAGFMLSNDLLIVTGA 246
                   4566667788899999997 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.9e-05
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGS.........CHHHHHHHHH-SEEEEES-S CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhg.........skaanealeeaDlvlalGar 87 
                   e+ ae+l++++ ++i  G g+a ++a+  ++e  ekl++  ++   g   +  + p ++ +l   +          ++ n+ + ++D+vl++Ga+
    EHU00683.1 297 EETAEMLRSSRSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAkvpydvvleMDEINDDFSDTDTVLVIGAN 391
                   689****************************************9999999999999998866555568899999999999999**********76 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.51
                   T-EEEEEGGGTTSS-TTSTTEEEESGGG CS
  TPP_enzyme_M  39 giPvvttlmgkgvipedhplylgmlglh 66 
                   g+Pv++ ++++ vi  +   + g++g+ 
    EHU00683.1 408 GMPVLEVWKAQNVIVFKRSMNTGYAGVQ 435
                   7899999999999998888888888875 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.4       2.9   1.3e+04      36      49 ..       7      20 ..       5      25 .. 0.55
   2 ?   10.3   0.1   0.00013      0.57      13      52 ..      38      77 ..      26      83 .. 0.86
   3 ?    0.2   0.6      0.18   8.2e+02      11      28 ..      93     110 ..      87     146 .. 0.75
   4 ?   -1.6   8.2      0.66     3e+03       8      44 ..     166     196 ..     163     200 .. 0.54
   5 ?    1.9   4.6     0.053   2.4e+02       8      36 ..     193     221 ..     190     240 .. 0.90
   6 ?   -0.7   0.2      0.35   1.6e+03      29      54 ..     237     264 ..     225     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.9
     DUF4229 36 llAlvvalplSmvl 49
                + A +va++l ++ 
  EHU00683.1  7 TAAYIVAAILFIMS 20
                45666666664444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
     DUF4229 13 vltavillvarliglpvpllvaallAlvvalplSmvllkk 52
                ++ ++i+l+a ++g ++  +v +llA+v+ +++++ l k+
  EHU00683.1 38 ISGMAIALIASVFGPDSSHVVWILLAMVIGGAIGIRLAKR 77
                5678899999999*999999999***********988665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.18
     DUF4229  11 fvvltavillvarliglp 28 
                 fv+l+av+++++  ++ +
  EHU00683.1  93 FVGLAAVLVGINSYVDHA 110
                 888888888888655543 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.66
     DUF4229   8 laLfvvltavillvarliglpvpllvaallAlvvalp 44 
                 laL+v +++++++v+       + l a ++Alv+ l+
  EHU00683.1 166 LALVVSFLLLLWFVN------TQSLGAQVFALVIMLI 196
                 567777777777776......3444444444444333 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.053
     DUF4229   8 laLfvvltavillvarliglpvpllvaal 36 
                 + L+++l++  +lva + g+++p++v++l
  EHU00683.1 193 IMLIIALAFGWHLVASIGGADMPVVVSML 221
                 578999999999***99**********98 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.35
     DUF4229  29 vpllvaallAlvva..lplSmvllkklR 54 
                 ++ l++++ Alv +  ++lS+++ k + 
  EHU00683.1 237 SNDLLIVTGALVGSsgAILSYIMCKAMN 264
                 6668888999998744689998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3466.49
//
Query:       EHU00684.1  [L=510]
Description: pyridine nucleotide transhydrogenase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-74  250.4   1.9    1.7e-74  249.7   1.9    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    3.2e-51  173.2   0.0    6.2e-51  172.3   0.0    1.5  1  AlaDh_PNT_N    Alanine dehydrogenase/PNT, N-terminal domain
    2.1e-36  124.2   8.3    6.6e-36  122.6   8.3    1.9  1  PNTB_4TM       4TM region of pyridine nucleotide transhydroge
    0.00038   19.9   0.5       0.12   11.7   0.1    2.8  3  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.015   14.6   0.3      0.025   13.8   0.3    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.099   12.9   2.2       0.25   11.6   2.2    1.6  1  DUF3392        Protein of unknown function (DUF3392)
       0.48   10.7   2.2          3    8.2   1.6    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.7   1.9   6.7e-78   1.7e-74       1     213 [.     141     368 ..     141     369 .. 0.98

  Alignments for each domain:
  == domain 1  score: 249.7 bits;  conditional E-value: 6.7e-78
                  HHHHHHHHCSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE....................H CS
  AlaDh_PNT_C   1 AvleaakalekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev....................l 78 
                  A++eaa+++ +ff+g++t+aG+vp   pakv+viG+GvaGl+Ai +a +lga+V+++D+rp+++eq++s+ga+f+e+                    +
   EHU00684.1 141 AIVEAAHEFGRFFTGQITAAGKVP---PAKVMVIGAGVAGLAAIGAAGSLGAVVRAFDTRPEVKEQVQSMGAEFLELdfkeeagsgdgyarvmsdafI 235
                  899*********************...*********************************************************************** PP

                  CHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEETTGGGT-SBTT--TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHHHHH CS
  AlaDh_PNT_C  79 ksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDvAidqGGnvetsrltthgepvveekgvvhygvanlpgavprtasalltnn 176
                  k++++l+a++ +e+d++++t+lipGk+aP+L+t+emv+sMkpgsVivD+A+++GGn++   lt +++ +v+++gv+++g+++lp+++p+++s+l+ +n
   EHU00684.1 236 KAEMALFAQQSQEVDIIVTTALIPGKPAPTLITREMVASMKPGSVIVDLAAQTGGNCA---LTVADRVTVTDNGVKIIGYTDLPSRLPTQSSQLYGSN 330
                  **********************************************************...************************************* PP

                  HHHHHHHHC..HHHTCCHHHCTSHHHHCCEEEETTEESS CS
  AlaDh_PNT_C 177 tlpyleell..adkglkkalkedealrkglvvkkGkvtn 213
                  ++++++ l+  +++++  ++ +d ++r+++v+++G++t+
   EHU00684.1 331 LVNLMKLLCkeKNGEI-VIDFDDVVIRSVTVIRDGEITW 368
                  *********7555566.9999****************98 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.0   2.4e-54   6.2e-51       1     136 []       4     137 ..       4     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 2.4e-54
                  EE---SSTT----SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GGCHH CS
  AlaDh_PNT_N   1 gvpkEikagErRvaltPatvkkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkepseeelellkegqtlisflhlaanp 98 
                  g+pkE++a+E+Rva+tP+t+++L+++G++v++e+gaG+ a+f+d+ Y +aGa++++++ +v++ ad++lkV++p e++++l++eg+tl+sf+++a+np
   EHU00684.1   4 GIPKERSANESRVAATPKTIEQLIRLGFSVTIEQGAGKPASFDDDSYVNAGATLTDRQ-QVWQ-ADIVLKVNAPGEDDIALMREGSTLVSFIWPAQNP 99 
                  89*****************************************************877.9***.********************************** PP

                  HHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHHH CS
  AlaDh_PNT_N  99 ellealaekgvtaialElvprisraqsldaLssmaeia 136
                  ell++la+++vt++a+++vprisraqsldaLssma+ia
   EHU00684.1 100 ELLDKLAARKVTVMAMDAVPRISRAQSLDALSSMANIA 137
                  ************************************98 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   8.3   2.6e-39   6.6e-36       1      82 []     427     509 ..     427     509 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 2.6e-39
    PNTB_4TM   1 altvfvLalfvGyeviwkVtpaLhtPLmsvtnaisgiiivgallalg.stlakvlgaiavvlasinvvGGFlvtqrmLkmFkk 82 
                 ++tvf+La++vGy+v+w+V++aLhtPLmsvtnaisgii+vga+l++g   ++++l++iav++asin++GGF+vtqrmLkmF+k
  EHU00684.1 427 HFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGAILQMGhGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRK 509
                 589********************************************877899****************************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   2.7e+03     134     154 ..      98     118 ..      77     137 .. 0.71
   2 !   11.7   0.1   4.7e-05      0.12      33      86 ..     162     215 ..     129     217 .. 0.82
   3 !    5.4   0.0    0.0041        10      84     127 ..     241     285 ..     225     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
                   HHHHHHHHHTTSCCEEEES-- CS
  2-Hacid_dh_C 134 eeaLleaLksgkiagaalDvf 154
                   +  Ll+ L ++k+  +a+D +
    EHU00684.1  98 NPELLDKLAARKVTVMAMDAV 118
                   456777777777777777765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.7e-05
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHH CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsle 86 
                   ++   +v +iG+G  G a++  + ++g+ v a+d++++ +e+++++g+e+ +l+
    EHU00684.1 162 KVPPAKVMVIGAGVAGLAAIGAAGSLGAVVRAFDTRPEVKEQVQSMGAEFLELD 215
                   56678999******************************9999999999999886 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0041
                   SHHHHHHH-SEEEE-S-.-STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  84 sleellaesDivslhlp.ltpetrhlinaeelakmkkgailiNta 127
                    + +  +e Di++ ++    +    li++e+ a+mk+g++++  a
    EHU00684.1 241 LFAQQSQEVDIIVTTALiPGKPAPTLITREMVASMKPGSVIVDLA 285
                   5555666778776654414455678****************9876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   9.8e-06     0.025       2     177 ..     167     200 ..     132     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.8e-06
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  +v+viG+G+AGlaa   ++  ga v  +                                                                      
   EHU00684.1 167 KVMVIGAGVAGLAAIGAAGSLGAVVRAF---------------------------------------------------------------------- 194
                  5667777777776666666666666655...................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrl 177
                                                                                          + r+++
   EHU00684.1 195 ------------------------------------------------------------------------DTRPEV 200
                  ........................................................................333333 PP

>> DUF3392  Protein of unknown function (DUF3392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   9.8e-05      0.25      42      99 ..     417     473 ..     405     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-05
     DUF3392  42 rllsslkfvlrvlvfvllcafGyGllivlltPllakaLaqleslllalvvllvflliG 99 
                 + +++ +f+   +vf l c++Gy  ++  ++  l++ L+++++ + +++v+ ++l +G
  EHU00684.1 417 ANVAPSEFLSHFTVFALACVVGYY-VVWNVSHALHTPLMSVTNAISGIIVVGAILQMG 473
                 6789999****************5.56678999*******************999888 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.6    0.0012         3       1      30 [.     170     199 ..     170     200 .. 0.92
   2 ?   -0.2   0.0      0.46   1.2e+03      23      41 ..     280     298 ..     275     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    ++GaG++Gl+a  ++   g+ v  +++r+ 
     EHU00684.1 170 VIGAGVAGLAAIGAAGSLGAVVRAFDTRPE 199
                    8***********999999999999999975 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.46
                    EEE-SSSSSSGGG-EECET CS
  NAD_binding_8  23 lllekrdrlGGraasyevp 41 
                    ++++ + ++GG++a    +
     EHU00684.1 280 VIVDLAAQTGGNCALTVAD 298
                    58899999****9855554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3643.57
//
Query:       EHU00685.1  [L=317]
Description: uncharacterized DUF1471 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-64  212.3   0.6    5.8e-21   74.2   0.0    3.5  3  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   1.9e-23   3.4e-19       1      56 []      34      91 ..      34      91 .. 0.98
   2 !   66.1   0.0   1.1e-22     2e-18       1      56 []     120     176 ..     120     176 .. 0.99
   3 !   74.2   0.0   3.2e-25   5.8e-21       1      56 []     261     317 .]     261     317 .] 0.99

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 1.9e-23
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC....CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsare..nnggnlhatAelYK 56
                l+p+++i+++g+f+++ d++da+sk+Ade  A++Y+I+ +++  +n+gn+++tA+lYK
  EHU00685.1 34 LKPFERINITGRFNAIGDAADAVSKRADELNADSYYIQGINDsnGNSGNWRVTADLYK 91
                79**************************************99999************9 PP

  == domain 2  score: 66.1 bits;  conditional E-value: 1.1e-22
                 EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEEE CS
     DUF1471   1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelYK 56 
                 l+p++t++v+g f s++d+++a+sk+A+ekGA+++ I+++ + n ggn+ +tA++YK
  EHU00685.1 120 LEPFDTVTVTGFFPSQPDVNEAISKAAKEKGAASFFIVRQVDaNTGGNQFITAYIYK 176
                 79******************************************************9 PP

  == domain 3  score: 74.2 bits;  conditional E-value: 3.2e-25
                 EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEEE CS
     DUF1471   1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelYK 56 
                 +qp++t+++sg+fg+p++++++ +k+A+ kGAk+Y+It++++ ++ggnl++tA+l+K
  EHU00685.1 261 MQPFDTVTFSGHFGTPTEVSQEAAKRAAGKGAKFYHITRQWQnQSGGNLTVTADLFK 317
                 7*******************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2441.05
//
Query:       EHU00686.1  [L=462]
Description: putative arginine/ornithine antiporter transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-70  237.9  44.8    2.8e-70  237.3  44.8    1.2  1  AA_permease_2  Amino acid permease
    2.4e-14   52.8  41.9    5.3e-14   51.7  41.7    1.5  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.3  44.8   3.1e-74   2.8e-70       1     391 [.       5     408 ..       5     437 .. 0.90

  Alignments for each domain:
  == domain 1  score: 237.3 bits;  conditional E-value: 3.1e-74
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvla 93 
                    l+l +++alv++s++g+g+f  +  +aa +gpa++l++w+++++g++ ++l+++ l+ + ++ +gGi++y++a+fg++ +f+saw +w+++v++++
     EHU00686.1   5 LGLSALTALVLSSMLGAGVFSLPqnMAAVAGPAALLTGWLITGAGIIFLSLAMLLLTRLkPNLDGGIFTYARAGFGELTGFCSAWGYWLCAVIANV 100
                    68899***********9999988878888****************************999************************************ PP

  AA_permease_2  94 silsvaasyllnalgp.....dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffp 184
                    s+l++++s+l ++++      +++gntw+++l a+++l+lv+++ +rg+++ a i+   ++ k  +pl+++++l++ +++ + f++  + + +   
     EHU00686.1 101 SYLVIVFSALSFFTDTpdrviFGNGNTWQAMLGASVVLWLVHWLVLRGVQTAASINLLATLGKQ-VPLLLFVVLAVMAFNYDRFHFD-FSGLSLGV 194
                    *************99679**99999***************************************.7*************87766643.33446777 PP

  AA_permease_2 185 ngwpgvllgllivlwsfdGfesaanvseevkk.kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvil 279
                      w++v  ++li+lw+f+G+e+a++vs+++++ kdv +a+ +++l +l++yllv +++lg+vp   +a+ +n +s+a+l+ + +g +++ +i+v++
     EHU00686.1 195 PLWQQVKQTMLITLWVFIGVEGAVVVSSRARHkKDVGRATLLAVLAALLVYLLVILLSLGIVPRAALAEMRN-PSMAGLMTQLTG-SWGNAIIVVG 288
                    7****************************99879**************************************.99********99.********** PP

  AA_permease_2 280 ialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkk 375
                    +++s++ga ++++i++++v + +a++g++Pr +a++n +++p ++++lt+  ++++l+l++l+ +a+yn+ll+++s +++++yll+ ++++++ k 
     EHU00686.1 289 LIISVCGAYLSWTIMAAEVPFIAAQQGAFPRSIARQNVRNAPAASLWLTNGSVQVCLILIALT-GADYNMLLTIASEMILVPYLLVGLYLIKVVKG 383
                    ********************************************************9999986.8**********************999999998 PP

  AA_permease_2 376 rphlkr.........pgkilvaiig 391
                    +++            +g++l+++ g
     EHU00686.1 384 QNKPWAlvtgigasvYGIWLLYASG 408
                    6664335555555554445444444 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  41.7   5.9e-18   5.3e-14       7     418 ..      15     406 ..      10     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 5.9e-18
  AA_permease   7 lggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqf 103
                  l ++ G+g+f    + ++ aGp+++l ++l++g+ i++  l++  +  ++p   gg+ tya+   g+  Gf  ++ y+++ +   ++ +  ++i+++ 
   EHU00686.1  15 LSSMLGAGVFSLPQNMAAVAGPAALLTGWLITGAGIIFLSLAMLLLTRLKPnLDGGIFTYARAGFGELTGFCSAWGYWLCAV---IANVSYLVIVFSA 109
                  778999**********************************************************************777655...5556778888888 PP

  AA_permease 104 welvtdlpkawvt...........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgf 190
                  ++++td p   ++           ++v+l ++  + l gv   + + ++++l k + ++ f+++  ++ ++ ++ ++    f g +++      +p  
   EHU00686.1 110 LSFFTDTPDRVIFgngntwqamlgASVVLWLVHWLVLRGVQTAASINLLATLGKQVPLLLFVVLA-VMAFNYDRFHF---DFSGLSLG------VPL- 196
                  8888****77777***********99999999*******************************99.45555554444...34444444......333. PP

  AA_permease 191 akeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvl 288
                          +++   + i +  f G e  ++++++++  +k++ +a+l +v+  +++Y+l++ll   +vpr +l  +    ++   +   ++ +  s  
   EHU00686.1 197 -------WQQVKQTMLITLWVFIGVEGAVVVSSRARH-KKDVGRATLLAVLAALLVYLLVILLSLGIVPRAALAEMR---NP--SMAGLMTQLTGSWG 281
                  .......345666677777778888888888888765.99********************************98888...45..56666666666777 PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliils 386
                  + +i++++++++ ++++s ++ a  v +  a++g++P+  ++ + r+ P++++ l+   ++++l+l +l+ a    +n+ll+i+  ++l+ +ll+ l 
   EHU00686.1 282 NAIIVVGLIISVCGAYLSWTIMAAEVPFIAAQQGAFPRSIARQNVRNAPAASLWLTNGSVQVCLILIALTGA---DYNMLLTIASEMILVPYLLVGLY 376
                  89999*********************************************************9966666665...5*******************999 PP

  AA_permease 387 ylrfRkalkyqgrsieelgfkaallplgvilv 418
                  ++++ k    ++ ++   g+ a ++  ++ ++
   EHU00686.1 377 LIKVVKG--QNKPWALVTGIGASVYGIWLLYA 406
                  9988777..56666656666655555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 3601.48
//
Query:       EHU00687.1  [L=136]
Description: hypothetical protein CKS_2851 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1034.12
//
Query:       EHU00688.1  [L=241]
Description: DNA-binding response regulator in two-component regulatory system with RstB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-21   76.4   0.2    3.6e-21   75.0   0.0    1.7  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
    5.8e-20   71.5   0.0    8.4e-20   71.0   0.0    1.2  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.38   3.4e+03      48      61 ..     107     120 ..     106     125 .. 0.76
   2 !   75.0   0.0     4e-25   3.6e-21       2      77 .]     156     231 ..     155     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.38
                  HHHHHHHHHHHTTT CS
  Trans_reg_C  48 vhisrLRkkLedde 61 
                  v  +rLR  L++++
   EHU00688.1 107 VLLARLRLHLRQSQ 120
                  67899999999943 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 4e-25
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  e+++l++  f+lL++L++++g+++ r+ Ll+ + g ++d+ dr++dv+isrLRkkL+d++ +p +I+t+r++GY +
   EHU00688.1 156 ENIALSTADFDLLWVLASHAGQILNRDALLKTLRGVSYDGMDRSIDVAISRLRKKLHDSATEPFRIKTIRNKGYLF 231
                  6799********************************************************9*************86 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   9.3e-24   8.4e-20       1     111 [.       4     112 ..       4     113 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 9.3e-24
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   ++ v+D+p v +l++ +l ++++ ev + + g+ a + + e+++dl++lDi++pg dG+ +++ +r++  + p+++lt+ +++ + + al++ga+d+
    EHU00688.1   4 IVYVEDEPEVGSLIAAYLGRHDI-EVIVETRGDRAEATIAEQQPDLVMLDIMLPGKDGMSICRDLRANW-QGPIVLLTSLDSDMNHILALEMGAQDY 98 
                   678********************.7777789************************************99.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   + K   p+ Ll++l
    EHU00688.1  99 ILKTAPPAVLLARL 112
                   *******9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2100.98
//
Query:       EHU00689.1  [L=433]
Description: sensory histidine kinase in two-component regulatory system with RstA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-19   70.0   0.0    4.1e-19   69.1   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    5.7e-07   29.5   1.1    5.7e-07   29.5   1.1    2.1  2  HisKA        His Kinase A (phospho-acceptor) domain
    1.2e-05   25.5   0.0    3.9e-05   23.9   0.0    1.9  1  HAMP         HAMP domain
     0.0018   18.1   0.0     0.0034   17.2   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.057   13.4   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.1e-22   4.1e-19       3     111 ..     317     424 ..     315     425 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.1e-22
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                  + ++++++nlv Na+++   +++++v++  +     ++v D+G+Gip e+++++fe+f++ d s++r +gg GlGl+iv++++  + G+++ve++p +
  EHU00689.1 317 TRLMERVLDNLVNNALRY--ANQRLRVSLWFDGAVGNLQVDDDGPGIPHEERERVFEPFVRlDPSRDRATGGCGLGLAIVHSIAHALSGRVSVETSPLG 413
                 556789***********9..6789999999877899*************************************************9************* PP

                 EEEEEEEEESS CS
   HATPase_c 101 Gttftftlple 111
                 G + +f+ pl+
  EHU00689.1 414 GASLRFSWPLD 424
                 ******99986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   1.1   1.6e-10   5.7e-07       1      65 [.     211     269 ..     211     271 .. 0.88
   2 ?   -2.2   0.0       1.2   4.4e+03      49      62 ..     322     335 ..     313     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.6e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 s+ +++ g+aHELrtPL  ++  +e+  +        ++  + + + + +l++l+e+lL+++r++
  EHU00689.1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN------LSEAESAALNRDVSQLESLIEELLTYARLD 269
                 689***********************644......44445678999*****************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHC CS
       HisKA  49 rrldhlvedlLdls 62 
                 r ld+lv++ L+++
  EHU00689.1 322 RVLDNLVNNALRYA 335
                 45788999988876 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   3.9e-05      11      52 ..     165     206 ..     158     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP  11 rrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                  rL+ aa+r ++G+ld+r   ++   + +++ afN+M+++++
  EHU00689.1 165 LRLEHAAQRFGQGQLDVRTHFDSTSSLFRVGVAFNQMAENIN 206
                 59****************999*******************97 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.4e-07    0.0034       4      85 ..     321     397 ..     317     414 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.4e-07
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalr.latsskeakrkstslGkkGiGlklAslslg 85 
                  e +l  lv+N+l    ++  +++ ++ g++g++++ DdG G++ ee +++++ + + +++     + +G  G+G  lA++++ 
   EHU00689.1 321 ERVLDNLVNNALRYANQRLRVSLWFD-GAVGNLQVDDDGPGIPHEERERVFEpFVRLDPS---RDRATGGCGLG--LAIVHSI 397
                  788999*******9999999999997.799*********************846677777...46777777877..7776654 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.057      37     112 ..     325     401 ..     307     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
  HATPase_c_2  37 eEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvDev 112
                  + +++Na ++a+     ++++v+l+ d+    ++v D+Gpg + e++++  e  p        +     +G+Gla++++++  +
   EHU00689.1 325 DNLVNNALRYAN-----QRLRVSLWFDGAVGNLQVDDDGPGIPHEERERVFE--PfvrldpsrDRATGGCGLGLAIVHSIAHAL 401
                  556788888888.....58899999****************88887665444..4568899999999999********999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3534.22
//
Query:       EHU00690.1  [L=495]
Description: carboxypeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-172  574.5   0.0   2.1e-172  574.3   0.0    1.0  1  Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  574.3   0.0  1.2e-176  2.1e-172       2     488 .]       8     492 ..       7     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 574.3 bits;  conditional E-value: 1.2e-176
  Peptidase_M32   2 lkellkkvsalesasallewDketvmpkkgaearaeqlatLselahelltseevaellekleeekeeldekekavveelkreykkakkvpaelvea 97 
                    l ++++++s  ++ sa+  wD++t+mp++g++ar+e+la +s l+h++lt+++++++l+++e+++++++  e+a++ e++r+y +a+ +paelvea
     EHU00690.1   8 LCKTFQRLSRFSHLSAIAGWDMQTMMPAGGSAARGEALAEMSVLRHQILTDKRIGDWLDQAEQQSLNDV--ERANLGEMRRAYVQATLLPAELVEA 101
                    56899**********************************************************999886..8************************ PP

  Peptidase_M32  98 lakasakaeaaWreareandfalfepsLeevielkreiaell.edlkkspYdaLldeyepgltvekidalFeelkealvpllkkikeskekekkdk 192
                    ++ a +++e+aWr++r and++ f+ +L+ev++l+r++ael+ + ++ s YdaLld +epg+t++++d++F++lk++l  ll+++ e++++++   
     EHU00690.1 102 KSIAGSRCEHAWRTQRPANDWQGFATNLKEVVRLSRQEAELRaQANGCSRYDALLDVFEPGMTSATLDHTFGQLKTWLPHLLQQVVEKQAQQPV-- 195
                    *****************************************************************************************95544.. PP

  Peptidase_M32 193 sflereipeekqrelsrellkalgfdfdrgrldeseHPFttsfsrkDvRittryeednllsslfsvlHEaGHalYeqnlpeelsktplgggvslgi 288
                     + ++++p+++qrel+ +++ +lgfdf++grld s+HPF+ +  ++DvRittry++d++ls++++v+HE+GHa Yeqnlpe+++++p++ ++s +i
     EHU00690.1 196 ITPQGPFPIASQRELGLRVMAELGFDFNHGRLDISAHPFCGG-VPEDVRITTRYNQDEFLSAMMGVIHETGHARYEQNLPEQWRGQPVALARSTAI 290
                    4899**************************************.88*************************************************** PP

  Peptidase_M32 289 hEsqSrlyEniigrskeFwevllpklkeafpeqlddvsleefyeavnkvepsliRveADEltYslHillRyelEkeliegklsvkdlpeaWnekyk 384
                    hEsqS+l+E+++grs  F++ +lp++ ++ ++q + +++++f++  ++v+p+liRv+ADEl+Y++H++lRye+E++lieg+++v+d+p++W+ek++
     EHU00690.1 291 HESQSLLMEMQLGRSAPFLQRILPQIISQLGDQPA-LQADNFVRLTQQVKPGLIRVDADELSYPAHVILRYEIERALIEGEIEVEDIPALWDEKMQ 385
                    ********************************999.************************************************************ PP

  Peptidase_M32 385 eyLgidpp.ddaeGvLQDvHWssgafGYFPtYalGniyaaqlfeamekdlpel..eiakgefseikkWLkenihqkGslysseellkkatgeslna 477
                    + Lg+d   + ++G++QD+HW++gafGYFPtY+lG++yaaqlf+a+++++p+    i++g+++++ +WL++ni+q+Gs+ ++e+l+ +atge+ln+
     EHU00690.1 386 QSLGLDTRgNYRNGCMQDIHWADGAFGYFPTYTLGAMYAAQLFQALQNAIPQSaeLIQHGDLQPVFDWLQQNIWQHGSRFTTEQLIVNATGEALNP 481
                    ******9989****************************************7767889*************************************** PP

  Peptidase_M32 478 eyyidyLkeky 488
                    +y+ ++L+++y
     EHU00690.1 482 DYFRKHLEQRY 492
                    *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3545.13
//
Query:       EHU00691.1  [L=161]
Description: acid shock protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.054   13.9  10.1      0.054   13.9  10.1    9.4  8  Asr              Acid shock protein repeat
         10    4.1  21.7         11    4.0  21.7    1.0  1  Hid1             High-temperature-induced dauer-formation pro


Domain annotation for each model (and alignments):
>> Asr  Acid shock protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7  19.8     0.087   7.8e+02       2      21 .]      52      67 ..      51      67 .. 0.84
   2 ?    1.2  18.7     0.061   5.5e+02       3      21 .]      66      81 ..      66      81 .. 0.81
   3 ?   13.9  10.1     6e-06     0.054       6      21 .]      82      97 ..      82      97 .. 0.98
   4 ?    6.1  14.4    0.0017        15       3      21 .]      96     111 ..      96     111 .. 0.91
   5 ?    1.8  18.1     0.041   3.7e+02       3      21 .]     110     125 ..     110     125 .. 0.81
   6 ?    1.6  18.3     0.047   4.2e+02       3      21 .]     124     139 ..     124     139 .. 0.81
   7 ?    5.5  15.0    0.0027        24       3      21 .]     138     153 ..     138     153 .. 0.91
   8 ?   -3.2   4.5       1.6   1.4e+04       1      10 [.     154     161 .]     154     161 .] 0.53

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.087
         Asr  2 HkKHKVtKKTvEQKAQAAKK 21
                HkKH    K   QKAQAAKK
  EHU00691.1 52 HKKH---HK-AAQKAQAAKK 67
                ***7...55.46*******9 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.061
         Asr  3 kKHKVtKKTvEQKAQAAKK 21
                kKH    K   QKAQAAKK
  EHU00691.1 66 KKH---HKKAAQKAQAAKK 81
                786...45567*******9 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 6e-06
         Asr  6 KVtKKTvEQKAQAAKK 21
                KV KK + QKAQAAKK
  EHU00691.1 82 KVAKKDTAQKAQAAKK 97
                8**************9 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0017
         Asr   3 kKHKVtKKTvEQKAQAAKK 21 
                 kKH  tKK   QKAQAAKK
  EHU00691.1  96 KKH--TKKPA-QKAQAAKK 111
                 79*..99975.*******9 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.041
         Asr   3 kKHKVtKKTvEQKAQAAKK 21 
                 kKH    K   QKAQAAKK
  EHU00691.1 110 KKH---HKKAAQKAQAAKK 125
                 786...45567*******9 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.047
         Asr   3 kKHKVtKKTvEQKAQAAKK 21 
                 kKH    K   QKAQAAKK
  EHU00691.1 124 KKH---HKKAAQKAQAAKK 139
                 786...45567*******9 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.0027
         Asr   3 kKHKVtKKTvEQKAQAAKK 21 
                 kKH  tKK   QKAQAAKK
  EHU00691.1 138 KKH--TKKPA-QKAQAAKK 153
                 79*..99975.*******9 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 1.6
         Asr   1 qHkKHKVtKK 10 
                 +HkK    KK
  EHU00691.1 154 HHKKA--AKK 161
                 77773..344 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  21.7    0.0012        11     591     699 ..      47     155 ..       2     160 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0012
        Hid1 591 rldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavs....qlremsekarakesaesteesrqesatsk 685
                 +++ +++++++  ++ + ++    ++++   ++ + +k+++a++d  +ka+  k++t++ +++a+     +++  ++ ++ak+++++ ++++q+++++ 
  EHU00691.1  47 HKAAVHKKHHKAAQKAQAAK----KHHKKAAQKAQAAKKKVAKKDTAQKAQAAKKHTKKPAQKAQAakkhHKKAAQKAQAAKKHHKKAAQKAQAAKKHT 141
                 22222222222222222222....223333444444455555555554444444444444444333223233444444444444455555555555555 PP

        Hid1 686 kspsgmsqsaeekf 699
                 k+p++ +q+a+++ 
  EHU00691.1 142 KKPAQKAQAAKKHH 155
                 55555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5081  (0.283396); expected 358.6 (0.02)
Passed bias filter:                      989  (0.055162); expected 358.6 (0.02)
Passed Vit filter:                       541  (0.0301746); expected 17.9 (0.001)
Passed Fwd filter:                       177  (0.00987227); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.61u 0.36s 00:00:01.97 Elapsed: 00:00:00.53
# Mc/sec: 916.29
//
Query:       EHU00692.1  [L=269]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-10   38.9   0.0    3.2e-09   36.9   0.0    1.9  1  Trypsin    Trypsin
    3.9e-06   27.8   0.0    5.8e-06   27.3   0.0    1.3  1  Trypsin_2  Trypsin-like peptidase domain


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   3.6e-13   3.2e-09      12     199 ..      51     241 ..      41     264 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.6e-13
                 STTEEEEEETTC.EEEEEEEEEETTEEEEEGGGTTT.............GGGEEEEESE.SBTTSCTTTEEEEEEEEEEEETTEBTTTT........TT CS
     Trypsin  12 fpwqvslsvksg.khlCgGslisenwvlTAaHCvsn.............asdvkvvlge.hnlkksegkeqklkvekvivhpnynpstl........dn 87 
                  pw +  +++++ + lC+++lis++  lTA+HC+                s  k +  e h+++ + +          +vh+   + +           
  EHU00692.1  51 APWDAIGQLETEsGNLCTATLISPHLALTAGHCLLTppgkfdkpvalrfMSTKKGWRYEiHDIDARVE--------PSLVHKLKADGEGwivpsnaaPF 141
                 477766666666689**********************8766544433331111112222233333333........33343333333313555555578 PP

                 TEEEEEESSSSTSBSSBHCCBBCS......TTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHH.TTTTSTTTEEEEESTTSSSBCTTT CS
     Trypsin  88 Diallklkepvklgdtvrpiclpa......assslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksa.ykgkvtenmlcagakeggkdacqG 179
                 D++l+ l++p    +++ pi l +      +++  ++g++++++G+       + d+l     +++s+++c  + +     ++ +         d+ +G
  EHU00692.1 142 DYGLIILRNP---PSAITPIPLFEgsrsdlTEALKAAGRKVTQAGY-------PADHLD----SLYSHSDCLITgW----AQRAVLSHQ----CDTLPG 218
                 **********...99*******994333333333344444444444.......556666....6889999999643....333333323....37888* PP

                 TTTSEEEETTT...EEEEEEEEE CS
     Trypsin 180 DSGGPlvcsdg...elvGivswg 199
                 DSG+Pl+ ++    +l+ + s  
  EHU00692.1 219 DSGSPLLLKGDkgwQLIAVQSSA 241
                 ********999999999999876 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.5e-10   5.8e-06       1     149 [.      67     236 ..      67     237 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6.5e-10
   Trypsin_2   1 GsGflvgsdglilTnaHvv...........dsadgaavkaikkkveeagadgrevpak..........vvaadp............elDlAllkvssde 66 
                 +++ l+++++  lT+ H++           +             ++  +++g++++            v + +               D+ l+ +  ++
  EHU00692.1  67 CTATLISPHL-ALTAGHCLltppgkfdkpvA------------LRFMSTKKGWRYEIHdidarvepslVHKLKAdgegwivpsnaaPFDYGLIIL-RNP 151
                 588999***9.********665433333330............3333333333333332222222222222222555555555433347777777.77* PP

   Trypsin_2  67 raglpplplgp.se......alkggepvyvvGyplggeksg.svssGivsgvvesesaasgegesflqtdaatspGsSGGplf...dsdGrvvG 149
                 ++++ p+pl + s+        + g++v+  Gyp+   +s  s s+  ++g  +         + +l ++++t pG SG+pl+   d+ +++++
  EHU00692.1 152 PSAITPIPLFEgSRsdlteaLKAAGRKVTQAGYPADHLDSLySHSDCLITGWAQ---------RAVLSHQCDTLPGDSGSPLLlkgDKGWQLIA 236
                 ********8774332222233333468888888766666333555555555555.........9999***************944334466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1962.35
//
Query:       EHU00693.1  [L=1299]
Description: ATP-dependent helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.7e-237  788.7   3.5   3.7e-237  788.7   3.5    1.4  2  DUF3418      Domain of unknown function (DUF3418)
    4.4e-18   65.4   0.0    8.2e-18   64.5   0.0    1.5  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    1.2e-17   64.1   0.0    3.4e-17   62.7   0.0    1.8  1  HA2          Helicase associated domain (HA2)
    7.9e-12   45.5   0.0    2.5e-11   43.9   0.0    1.9  1  Helicase_C   Helicase conserved C-terminal domain
    5.4e-08   32.8   0.1    1.5e-07   31.4   0.1    1.8  1  DEAD         DEAD/DEAH box helicase
    3.3e-05   24.2   0.1    0.00011   22.6   0.1    1.9  1  AAA_19       AAA domain
     0.0002   21.2   0.2    0.00042   20.1   0.2    1.5  1  AAA_30       AAA domain
    0.00022   20.4   0.0    0.00054   19.1   0.0    1.6  1  T2SSE        Type II/IV secretion system protein
    0.00046   20.5   0.6     0.0029   17.9   0.1    2.6  2  AAA_22       AAA domain
    0.00071   20.1   0.0     0.0016   19.0   0.0    1.5  1  AAA_23       AAA domain
      0.002   17.6   0.1     0.0045   16.5   0.1    1.5  1  PhoH         PhoH-like protein
     0.0047   16.8   2.3      0.042   13.8   1.1    2.9  2  NACHT        NACHT domain
     0.0093   15.2   0.0      0.017   14.4   0.0    1.4  1  DUF2075      Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.059   12.9   1.4       0.18   11.4   0.1    2.5  3  AAA_25       AAA domain
       0.37   10.8   2.1          3    7.8   0.7    2.7  2  ResIII       Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DUF3418  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       3.6   4.3e+03     376     462 ..      27      68 ..      17      93 .. 0.46
   2 !  788.7   3.5  3.1e-240  3.7e-237       2     583 .]     712    1296 ..     711    1296 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.6
     DUF3418 376 lekqlpnkqklalaaaplgsveaLlddliaaaldrllaeelprdeaeFealleevraelaeeaqevvrlveeilaaaaevekklkka 462
                 l+++l++++k++   a++g +++L +                                             +ilaa ++v+++++++
  EHU00693.1  27 LQRRLHGARKVKNPDAQHGIAAELEQ---------------------------------------------DILAAEQRVAQRIAAT 68 
                 33333333333333333333333333.............................................3555555555555433 PP

  == domain 2  score: 788.7 bits;  conditional E-value: 3.1e-240
     DUF3418    2 rgavvatervtLyGlpivakRrvnygkidpeeaRelFIReALVegewetkhaFfahNrklleeveeleakaRRrDilvddetlfaFYdariPadvvs 98  
                  +gav+a+e+vtLyGlpiva R+vnyg idp ++RelFIR+ALVeg+w+t+haFf++N+kl +eve+le+k+RRrDilvddetlfaFYd+r+ ++vvs
  EHU00693.1  712 QGAVMASEKVTLYGLPIVAARKVNYGAIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLEHKSRRRDILVDDETLFAFYDQRVGKEVVS 808 
                  89*********************************************************************************************** PP

     DUF3418   99 arhfdkWwkkarkedpklLdltredLlreeaaevteedFPdslglgglelplsYqFePgseaDGVtvtvplalLnqvsaerfeWlVpGlleekvtal 195 
                  arhfd+Wwk+++k++p+lL++++++L++++a++v++ d+P+ ++ g+l+l+lsYqFePg++aDGVtv++pl+lLnqv++++feW++pG+++e+++al
  EHU00693.1  809 ARHFDSWWKQVSKTTPELLNFDKQMLIKAGADTVSQLDYPNVWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDEAGFEWQIPGVRRELIIAL 905 
                  *******************************************8899************************************************** PP

     DUF3418  196 iksLPKalRrnlvPapdvaaavlerleekkpaegpLleaLaralrrltgveveeddfdlekLpahlrmnfrvvdekgkvlaegrdlaaLkarlaeka 292 
                  iksLPK+lRr+lvPap++a+a+l r+   + +e pLl+aL+r+ rr+tgv++e+dd+++e++p+hl+m+frvvde++++l+eg+dlaaLk  l++k+
  EHU00693.1  906 IKSLPKPLRRHLVPAPNYAEAFLGRV---TAMEMPLLDALSREFRRMTGVTLERDDWQWEQVPDHLKMTFRVVDEHNRKLQEGKDLAALKVLLKGKV 999 
                  ***********************999...88899*************************************************************** PP

     DUF3418  293 raavaaaakaa.erkgltswdfgelpetveikrggqevkgypaLvdegdsvalrvfdteaeaaaahraGlrrLlllalkeqlkqlekqlpnkqklal 388 
                  +++++++a++  e++gl+ w fg+lp+++e+krg+ +vk++paLvde+dsva+r+fd+e+e+++++++G rrLlll++++++k+l+++lpnk+kl l
  EHU00693.1 1000 QETLSNVADDGlEQRGLHLWCFGDLPRSYEQKRGNYQVKAWPALVDEKDSVAIRLFDSEHEQQKMMWRGQRRLLLLNIPSPVKYLHEKLPNKAKLGL 1096
                  *******99889************************************************************************************* PP

     DUF3418  389 aaaplgsveaLlddliaaaldrlla..eelp.rdeaeFealleevraelaeeaqevvrlveeilaaaaevekklkkaks..la.aladireqleeLv 479 
                   ++p+g+v +L+dd+ia+ +d+l+a     p +++a+F+al+e+vrael++++ e++++ve+il+a+ +++k+lk++ +  la aladi++q++ Lv
  EHU00693.1 1097 YFNPYGKVMELIDDCIACGIDKLIAeaGG-PaWEQAAFDALCEKVRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDmtLAlALADIKAQMNGLV 1192
                  ************************97522.35*******************************************9999763336************ PP

     DUF3418  480 ypgfvaatpaerLqhlprYlkAielRleklkadparDaeklaeveeleqayaellaklpeeradseeleeirwlieElrVslFAqeLgTavpVSekR 576 
                  y+gfv++ ++++L++  rYl++ie+Rlekl+ dp+ D++++ +v+++eqa+++ ++klp++r+d+e++ +irw++eElr+slFAq+LgT++p+S+kR
  EHU00693.1 1193 YRGFVTQNGWQHLADTLRYLHGIERRLEKLPVDPHSDRARMLRVQAVEQAWQAWRNKLPPQRQDDEDVLHIRWMLEELRISLFAQQLGTPYPISDKR 1289
                  ************************************************************************************************* PP

     DUF3418  577 lekalae 583 
                  + +a+++
  EHU00693.1 1290 IMQAMEQ 1296
                  ****985 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   6.9e-21   8.2e-18       1      82 [.     621     697 ..     621     699 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 6.9e-21
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82 
                  ++ +ll Gl+++i++kd +k+++++ar + r++i+p S l+k    k+p+w + +elvet++l+ r  ++idp+w++++a++
   EHU00693.1 621 IHCALLTGLLSHIGQKDAEKQEFTGAR-NARFAIFPGSGLFK----KPPKWTMVAELVETSRLWGRIAARIDPEWIEPLAQH 697
                  6789**********************9.*************9....**********************************98 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   2.8e-20   3.4e-17       2      98 ..     466     549 ..     465     582 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 2.8e-20
         HA2   2 lelLvalgAL....deegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrkl 96 
                 ++lL +lgAL    + + +lT  Gr++a+lP++prla+m laa  ++ gc++ev+ i+A ls +++  +++e+++ ++e+      ++r         +
  EHU00693.1 466 VRLLEELGALtlseEGHYKLTGSGRQLAQLPVDPRLARMVLAA--RQYGCVREVMIIAAGLSIQDPRERPAEKKQASDEK------HRR---------F 547
                 689*******998555589************************..555**************999999999876655542......222.........2 PP

         HA2  97 ah 98 
                 a 
  EHU00693.1 548 AD 549
                 22 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.1e-14   2.5e-11      10     110 ..     285     403 ..     273     404 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.1e-14
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SSH.... CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rnv.... 97 
                 l ++e +g+ilif+   +++ + ++ l ++   + +v++l+++l+++e+++++++  +g +++++at+vae+++++p++++Vi+ +      +      
  EHU00693.1 285 L-SQEGRGDILIFMSGEREIRDtADALMKRDlpHTEVLPLYARLSNSEQNRVFQSH-SG-RRIVLATNVAETSLTVPGIKYVIDPGTArisrY-Syrtk 379
                 3.68899***********9977756665555799*********************9.55.48*********************9999955442.05777 PP

                 ...........HHHHHHHTTSSST CS
  Helicase_C  98 ...........tsyiqriGRtgRa 110
                            +s++qr+GR+gR+
  EHU00693.1 380 vqrlpiepisqASANQRKGRCGRV 403
                 79999999999************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.2e-10   1.5e-07       3     170 ..      82     233 ..      80     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.2e-10
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskldngvdi 100
                  Q+ + ++i   + v+va+eTGsGKT+     +l   +   +  +  +    P r  a+ ++n++ + +++ +l  +  +g +v+ +dq+ +    ++i
  EHU00693.1  82 KQQDIADAIRAHQVVIVAGETGSGKTTQLPKICL--ALG--RGITGLIGHTQPRRLAARTVANRIAEELET-SLGGC--VGyKVRFNDQVGET---TQI 170
                 5888999999999*************98444444..322..344446667899999999999999999994.44444..44347778887777...9** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                  ++t g l+  +++ +  l q  ++++DEa++ + +   df+   l++l     + + l+  vi+ SAT+ 
  EHU00693.1 171 KLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLN--IDFLLGYLREL---LPRRPdLK--VIITSATID 233
                 **********886555.49************99887..77777777777...44445344..*******97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   9.2e-08   0.00011       1     118 [.      83     206 ..      83     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.2e-08
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallve.....lggvkpeeillvaftgrAakelrerlaalgaeatTiH.rlalldfddlltealelle 92 
                 q+++++   +++v++v +  G+GKT+ l +i+  l +     +g+ +p+++++ ++++r a+el+++l +  +    +  ++++ +  +l+ +   ll 
  EHU00693.1  83 QQDIADaIRAHQVVIVAGETGSGKTTQLPKICLALGRgitglIGHTQPRRLAARTVANRIAEELETSLGGCVGYKVRFNdQVGETTQIKLM-TDGILLA 180
                 5666764567788888888************99887633333678889*******************976666544444133222222222.1222344 PP

      AAA_19  93 eaeeekklqeeellivDEfqdvdelq 118
                 e ++++ l + +++i+DE+ + +  +
  EHU00693.1 181 EIQQDRLLMQYDTIIIDEAHERSLNI 206
                 667788885555******98766444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   3.6e-07   0.00042       3      97 ..      80     199 ..      78     205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.6e-07
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g........grviglAptgkaAkvLaeelgi...........eastiakllkrlk 81 
                 +++Q+++++a+ +++  v+++ G  G+GKtt l ++  a+ +           +r+++ +  ++ A++L+++lg             ++t+       +
  EHU00693.1  80 SQKQQDIADAIRAHQ--VVIVAGETGSGKTTQLPKICLALGRGiTglightqpRRLAARTVANRIAEELETSLGGcvgykvrfndqVGETT-------Q 169
                 789*****9998877..9***************99988887664368999988999999999999***99766633333222222222222.......1 PP

      AAA_30  82 .............grarlepg.tllivDEa 97 
                              ++ rl  + + +i+DEa
  EHU00693.1 170 iklmtdgillaeiQQDRLLMQyDTIIIDEA 199
                 3333334556666445555555*******9 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.5e-07   0.00054     118     147 ..      82     111 ..      13     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.5e-07
       T2SSE 118 iaevlrkavrerglilvsGgTgsGKttlly 147
                  ++ ++ a+r++++++v+G TgsGKtt l 
  EHU00693.1  82 KQQDIADAIRAHQVVIVAGETGSGKTTQLP 111
                 445577888999***************994 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.4e-06    0.0029       5     117 ..      93     218 ..      89     231 .. 0.73
   2 ?   -1.7   0.0       2.7   3.2e+03      96     134 ..     263     304 ..     260     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst..sskdllrellralglelka..................erlsseelleal 82 
                 +++++v Ge+G+GKTt l ++   l          +++  ++  +++     ++++++++++l+ +l +                  +  +   ll+ +
  EHU00693.1  93 HQVVIVAGETGSGKTTQLPKICLALG---------RGITgLIGHTQPRrlAARTVANRIAEELETSLGGcvgykvrfndqvgettqiKLMTDGILLAEI 182
                 6789*********************4.........44444444444444479999999999999999999***********966666666666666444 PP

      AAA_22  83 e.qalraravielliiDEaqhlrs...eealeeLrslln 117
                 + + l  ++    +iiDEa+   s   + +l +Lr+ll 
  EHU00693.1 183 QqDRLLMQY--DTIIIDEAHER-SlniDFLLGYLRELLP 218
                 303444444..5********96.4447999999988865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.7
      AAA_22  96 iiDEaqhlrseealeeLrsllnl....srkgvqliLvGtpelr 134
                 +++Ea+ + + ++l+ + + ++     +r ++ +++ G +e+r
  EHU00693.1 263 VVEEADDV-ERDQLQAIFDAVDElsqeGRGDILIFMSGEREIR 304
                 79999999.9999999977777676667777777777777777 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-06    0.0016      19     148 ..      93     239 ..      81     290 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.3e-06
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsrks.....grgfeksdveiesegkvkay..veltfenkdgry...........trsiererelskk 99 
                 + ++++ G++G+GKTT l  i+laL+   ++l +         + + + ++ e e++  ++  ++++f+++ g+              +i+++r l + 
  EHU00693.1  93 HQVVIVAGETGSGKTTQLPKICLALGRGITGLIGHTqprrlAARTVANRIAEELETSLGGCvgYKVRFNDQVGETtqiklmtdgilLAEIQQDRLLMQY 191
                 5688999******************97666654444565454455566666777788888888999999988887999999999999999999999999 PP

      AAA_23 100 kgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefel 148
                 ++  +++a +++l+id l  +++ell ++ + l++i+  +  + ++f++
  EHU00693.1 192 DTIIIDEAHERSLNIDFLLGYLRELLPRR-PDLKVIITSATIDPQRFSR 239
                 99999999999999999999999876655.5566666666666444443 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.8e-06    0.0045       5      34 ..      79     108 ..      77     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.8e-06
                 -SHHHHHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH   5 ktkeQkeylealkkndivfaiGpaGtGKty 34 
                  +++Q+++++a++++++v+++G++G+GKt 
  EHU00693.1  79 VSQKQQDIADAIRAHQVVIVAGETGSGKTT 108
                 6799************************95 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.1   3.5e-05     0.042       2     133 ..      95     235 ..      94     260 .. 0.55
   2 ?   -0.6   0.0      0.94   1.1e+03      86     125 ..     278     323 ..     270     350 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-....-HCHHHCCCCTS--SSS-C............CHHHHCCSCCCEE... CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.rsladllfsqlpepaapvse............vwavllelperlL... 84 
                 +vi+ Ge GsGKTt l k++la+ +g      +  +  l  r++  +  +   l + l  +   + +  ++            ++ +   +++rlL   
  EHU00693.1  95 VVIVAGETGSGKTTQLPKICLALGRGITGLIGHTQPRRLAARTVANR--IaEELETSLGGCVGYKVRFNDQvgettqiklmtdGILLAEIQQDRLLmqy 191
                 89********************9998644322222222222222222..23344444444444444444445545555555432222222333444666 PP

                 ..EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHH CS
       NACHT  85 ..lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralr 133
                   +i+D + e +   ++     +   L+el+++   p  ++++t+ +   +
  EHU00693.1 192 dtIIIDEAHERSLNIDF-----LLGYLRELLPR--RPDLKVIITSATIDPQ 235
                 66666666666665555.....55666666666..6666666666555555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.94
                 EEE-STT-SS-TCH...............HHHHHCTTTTT--EEEE CS
       NACHT  86 ilDglDelvtdlgq......kekqpvrtlLselirkkllpeaslll 125
                 i+D++Del+++ +       ++++++r+    l+++ l+ +  l l
  EHU00693.1 278 IFDAVDELSQEGRGdilifmSGEREIRDTADALMKRDLPHTEVLPL 323
                 99******98555477777777777777777777766666655555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05     0.017       2      98 ..      94     200 ..      93     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakke.ekkkkkeafeklssfinnlsef..kkaeekkeepked 90 
                 +vv+V G++G+GKt  l ++  +l         + + r+ +  +v ++  + l+  l ++   k ++++++ + +++   ++     + ++++   + d
  EHU00693.1  94 QVVIVAGETGSGKTTQLPKICLALgrgitglIGHTQPRRLAARTVANRIAEELETSLGGCVgYKVRFNDQVGETTQIKLMTDGIllAEIQQDRLLMQYD 192
                 79**********************999988877778888888888899999999999999988899999999988876666655999999********* PP

     DUF2075  91 vvivDEAh 98 
                  +i+DEAh
  EHU00693.1 193 TIIIDEAH 200
                 ******** PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00015      0.18      26      61 ..      86     121 ..      73     197 .. 0.82
   2 ?   -3.5   0.0       5.3   6.4e+03      84     147 ..     301     364 ..     298     366 .. 0.70
   3 ?   -3.0   0.0       3.7   4.5e+03      86     125 ..    1024    1063 ..    1022    1066 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlalavatGk 61 
                 + + ++a+ ++++aG +g+GKtt +  ++la+ +G 
  EHU00693.1  86 IADAIRAHQVVIVAGETGSGKTTQLPKICLALGRGI 121
                 567789*****************9999888776554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.3
      AAA_25  84 delrrRlravg.ealrddarllvldlagv.eslpLfakdrggtl.ltadvdaleaaieevegvrlvv 147
                  e+r  + a++ ++l++ + l+++ + +  e++++f++ +g  + l+    +++++   v+g++ v+
  EHU00693.1 301 REIRDTADALMkRDLPHTEVLPLYARLSNsEQNRVFQSHSGRRIvLAT---NVAETSLTVPGIKYVI 364
                 477778888665888888888888888888999999877777773333...4677777777777654 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.7
      AAA_25   86 lrrRlravgealrddarllvldlagveslpLfakdrggtl 125 
                  l+r +++ + +++ +a+ +++d +++  ++Lf++++++++
  EHU00693.1 1024 LPRSYEQKRGNYQVKAWPALVDEKDSVAIRLFDSEHEQQK 1063
                  678888888999999******9988889999999988765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.7    0.0025         3      23     143 ..      92     201 ..      60     231 .. 0.71
   2 ?   -2.9   0.0       4.9   5.8e+03     100     140 ..     757     792 ..     747     793 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0025
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH..HHHHHHH.HHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk..slleqtl.eefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118
                  ++ ++++ +TG+GKT  + k++ +l +      + ++ +++   l  +t  +++++ l++     +  ++ + +++     ++++i ++t   l a++
  EHU00693.1  92 AHQVVIVAGETGSGKTTQLPKICLALGRG----ITGLIGHTQprRLAARTVaNRIAEELETS-LGGCVGYKVRFNDQ---VGETTQIKLMTDGILLAEI 182
                 44556788889999999888888888874....45555555533555555533333333333.22333344444444...5678888888888888888 PP

                 ........HHHTTT-SEEEEETGGG CS
      ResIII 119 eeeeeeseellrdrfdviiiDEaHr 143
                       +++ l  ++d iiiDEaH 
  EHU00693.1 183 ------QQDRLLMQYDTIIIDEAHE 201
                 ......88889999999******97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.9
                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEET CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDE 140
                 d ++++ ++   q+l ++      e+ e ++ r d+++ DE
  EHU00693.1 757 DWQTRHAFFRANQKLRSEV-----EDLEHKSRRRDILVDDE 792
                 5567788899999999999.....88888889999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.50
# Mc/sec: 7846.96
//
Query:       EHU00694.1  [L=199]
Description: NADH-azoreductase, FMN-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-46  158.2   0.0    2.4e-46  158.0   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    2.2e-13   50.2   0.0    2.8e-13   49.9   0.0    1.2  1  FMN_red       NADPH-dependent FMN reductase
  ------ inclusion threshold ------
      0.084   13.1   0.0        8.6    6.6   0.0    2.2  2  Flavodoxin_5  Flavodoxin domain


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.0   3.9e-50   2.4e-46       2     195 ..       3     194 ..       2     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 3.9e-50
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHC.....C.HHHHTTC.HHHHHHH.HHHHHCSSEEEEEEE-BTT CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaa.....k.layeekp.adveseq.iekllaadaivlqfPlwwf 90 
                   k+L+++++     s+s++la+ ++e+++++g ++vtvrdL++ ++pvl+ + + a     + l++++ + a   s++ i++l+a+d++v+++P+++f
    EHU00694.1   3 KVLVLKSSILAGYSQSGQLADFYAEQAKAKG-DQVTVRDLAENPVPVLDGELVGAlrpsdApLSPRQ-QeALSLSDAlIAELQAHDVVVIAAPMYNF 97 
                   9**********99******************.9**********************998753788888.66*************************** PP

                   B--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCT.CCCH.H CS
  Flavodoxin_2  91 gvPailKgwiDrvltagfaf.yteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegva.gaed.e 184
                   ++P +lK+++D +++ag +f yte+g  + +g+ kgk+a++++++Gg  +          a d l+p+++ +lgfiGi+dve+v++eg+a g+e   
    EHU00694.1  98 NIPTQLKNYFDLIARAGVTFrYTEAG--P-EGLVKGKRAVILSSRGGI-HK-------DTASDLLTPYVKLFLGFIGITDVEFVFAEGIAyGPEVaT 183
                   *************************9..6.67777*************.33.......3467999999***********************999988 PP

                   HHHHHHHHHHH CS
  Flavodoxin_2 185 ealaealerle 195
                   +a aea+++++
    EHU00694.1 184 KATAEAKDAIK 194
                   88888888765 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   4.7e-17   2.8e-13       2     152 ..       3     173 ..       2     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.7e-17
                 EEEEEES--STT.-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHT.........CGGSHHH........HHHHHHHHH-SCEEEEEEE CS
     FMN_red   2 kilvisGSlrkg.sntrklaewaaealkeagaevelidladlilpcalcdkdlese.........gqtsddv........aellekiaaadaliivtPe 82 
                 k+lv+  S  +g s + +la++ ae++k++g +v++ dla+ + p  ++d++l  +                         +l++ ++a+d+++i+ P 
  EHU00694.1   3 KVLVLKSSILAGySQSGQLADFYAEQAKAKGDQVTVRDLAENPVP--VLDGELVGAlrpsdaplsP-----RqqealslsDALIAELQAHDVVVIAAPM 94 
                 778885555444499************9999999999****9999..7887776665444455543.....0444568899****************** PP

                 CTTCE-HHHHHHHHCHT-..........SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHH.HTT-EEEECSEEEETS CS
     FMN_red  83 YngsysgllKnalDrlsr.........trgkkelrgKpvalvavgggrrgglraeeqlrqvla.elgaivvpraavavgk 152
                 Yn +++ +lKn +D++ r           ++  ++gK +++++  gg  +   a   l +    +lg i + ++++++++
  EHU00694.1  95 YNFNIPTQLKNYFDLIARagvtfryteAGPEGLVKGKRAVILSSRGG-IHKDTASDLLTPYVKlFLGFIGITDVEFVFAE 173
                 ****************99********767777778*******98877.99999999999999988999999888888765 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0075        45       9      35 ..      16      42 ..      13      50 .. 0.86
   2 ?    6.6   0.0    0.0014       8.6      29      65 ..      72     106 ..      65     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0075
  Flavodoxin_5  9 GqTkkiaeriaeelreegelvdvedve 35
                   q+ + a++ ae+ +++g++v+v+d+ 
    EHU00694.1 16 SQSGQLADFYAEQAKAKGDQVTVRDLA 42
                  68999*******************973 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0014
  Flavodoxin_5  29 vdvedvekesedlesydavvigasvyygkllpelakF 65 
                   ++++d+     +l+  d vvi+a+ y+ +++ +l+++
    EHU00694.1  72 LSLSDA--LIAELQAHDVVVIAAPMYNFNIPTQLKNY 106
                   556665..578999*****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1513.61
//
Query:       EHU00695.1  [L=106]
Description: hypothetical protein CKS_2843 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-27   96.1   0.6    1.4e-27   95.9   0.6    1.0  1  DUF1318       Protein of unknown function (DUF1318)
     0.0095   16.2   0.1      0.011   15.9   0.1    1.2  1  PG_binding_3  Predicted Peptidoglycan domain


Domain annotation for each model (and alignments):
>> DUF1318  Protein of unknown function (DUF1318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.6   1.6e-31   1.4e-27       3      92 .]      18     106 .]      16     106 .] 0.97

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 1.6e-31
     DUF1318   3 aaalkldeakaqGlvGetadGylgvvkaaaaearalvkaiNakRkavYteiAaknglsleevaklaaekliekaksGeyvqeanGkWvkK 92 
                 a+al+ldea+++G vGet +Gy++ + ++ +++ alvk+iN+ R+a+Y+++A++n+l ++eva++a++kl+++a +Geyv+++nG+W +K
  EHU00695.1  18 AWALTLDEARQSGRVGETLSGYIAPRADD-SDTLALVKRINDGRAAQYQRLAEQNNLITDEVARIAGQKLVNRAAAGEYVRGINGQWLRK 106
                 899***********************996.99********************************************************98 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.3e-06     0.011      33      63 ..      43      88 ..      19     105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
                  ..HHS-HHHHHHHHHHHHHHHHHHHHHHHH...............S CS
  PG_binding_3 33 arasadedaLlkainlarrefyldlaerri...............t 63
                   + + d  aL+k+in++r++ y++lae++                +
    EHU00695.1 43 RADDSDTLALVKRINDGRAAQYQRLAEQNNlitdevariagqklvN 88
                  4455677799******************976666555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 826.17
//
Query:       EHU00696.1  [L=62]
Description: lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-17   63.0   5.6    1.9e-17   62.7   5.6    1.1  1  Lipoprotein_19  YnbE-like lipoprotein


Domain annotation for each model (and alignments):
>> Lipoprotein_19  YnbE-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   5.6   1.1e-21   1.9e-17       1      34 []      27      60 ..      27      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.1e-21
  Lipoprotein_19  1 PdkPItINLNVkIehEvrvkvdkdvddlieenpg 34
                    P+ PItIN+NVkIehE+++kvdkdv++l++++++
      EHU00696.1 27 PKDPITINMNVKIEHEIHIKVDKDVEALLKNQSD 60
                    99******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 537.83
//
Query:       EHU00697.1  [L=873]
Description: hypothetical protein CKS_2841 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-65  219.5   1.6    1.2e-64  217.8   0.0    2.8  3  DctA-YdbH  Dicarboxylate transport
     0.0016   18.6   0.2      0.056   13.6   0.0    3.4  4  DUF748     Domain of Unknown Function (DUF748)
  ------ inclusion threshold ------
      0.035   12.9   0.1      0.051   12.3   0.1    1.1  1  NPR2       Nitrogen permease regulator 2


Domain annotation for each model (and alignments):
>> DctA-YdbH  Dicarboxylate transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       1.6   9.8e+03      51      77 ..     147     173 ..     144     179 .. 0.62
   2 ?   -2.1   0.0      0.45   2.7e+03       9      52 ..     590     632 ..     587     645 .. 0.68
   3 !  217.8   0.0     2e-68   1.2e-64       1     206 []     658     859 ..     658     859 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.6
   DctA-YdbH  51 ldlkkqkqeavlrlsgldlaellalqk 77 
                 l l+k++q+++ r ++l+l+  l+ q+
  EHU00697.1 147 LTLNKASQQLHYRGDNLQLEATLEGQQ 173
                 455566666666666666666666555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
   DctA-YdbH   9 vpitdikadlqgeyplleakplqlskasadllgGelsleelrld 52 
                 ++i+ +++++q+  +   ++ ++    ++ + +G++ ++ ++++
  EHU00697.1 590 MKIRAGELRAQVAFSAAAQQGFHAG-GHWTVKNGSVWTPDSQIN 632
                 5677777777777766666666665.888888888888888877 PP

  == domain 3  score: 217.8 bits;  conditional E-value: 2e-68
   DctA-YdbH   1 riaelnpgvpitdikadlqgeyplleakplqlskasadllgGelsleelrldlkkqkqeavlrlsgldlaellalqklkglaatGkldGtLPlvldkgg 99 
                 riae+++++++++i+adlqg  p++e+ pl l+++s+dllgG++++++lr++   q+++a + l++++l++l+ ++k  ++a++G+++G+LPl+++++ 
  EHU00697.1 658 RIAEIKNQFALQNIQADLQGAWPWRENDPLWLQDVSMDLLGGKITMPSLRMP---QHSPARVSLRDISLSKLVSAIKPRQFAMSGRVNGELPLWITNAR 753
                 79**************************************************...******************************************** PP

   DctA-YdbH 100 vsienGrLaarapgglrvdgeaavealaqsnpslklafdaLenleyseLsstldlapdGeltlkvrlkGknpdlekgrpvnLNynheenllqLlrslri 198
                 ++ienG++a+ +p++ r+d+++a +a++++n ++++a+d+L+++e+s++++tl+l++ Gelt+ ++++G+++  + ++ vnLNy+h+enl+qL+rslr+
  EHU00697.1 754 WIIENGWIANSGPLTFRMDKDMA-DAITANNIAAGAAMDWLRYMEISRSWATLNLDNLGELTMVAQVQGTSRFSNRNQTVNLNYRHQENLFQLWRSLRF 851
                 ***********************.*************************************************************************** PP

   DctA-YdbH 199 gdnleeki 206
                 gdnl++++
  EHU00697.1 852 GDNLQSWV 859
                 *****985 PP

>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.11   6.7e+02     105     135 ..     151     181 ..     120     236 .. 0.61
   2 ?   -3.0   0.0       1.2   7.5e+03      48      76 ..     329     345 ..     317     356 .. 0.51
   3 !   13.6   0.0   9.4e-06     0.056      59     132 ..     552     621 ..     529     630 .. 0.80
   4 ?   -3.5   0.0       1.8   1.1e+04      77      89 ..     714     726 ..     705     746 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.11
      DUF748 105 kLsldlryklakgdklkltaeg.nlgleqLel 135
                 k s +l+y+  ++ +l+ t+eg +l+++qL++
  EHU00697.1 151 KASQQLHYR-GDNLQLEATLEGqQLTVRQLTI 181
                 445555555.3222222222221344444443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
      DUF748  48 advelsgavnkggplqisGtlnplplase 76 
                              plq++G+ ++++ +++
  EHU00697.1 329 L------------PLQLTGDSKFAAMQLS 345
                 3............3444444443333332 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 9.4e-06
      DUF748  59 ggplqisGtlnplplaselelslkgldLaplspYlakylglelesGkLsldlryklakgdklkltaegnlgleq 132
                  gp++++G+   +  ++++++     +L+ ++p l++ l+++++ G+L ++++ + a++++  ++a g+ ++++
  EHU00697.1 552 VGPVRVNGRW--DGERLRGQAWWPTQSLTVFQPLLSPDLKMKIRAGELRAQVAFS-AAAQQ-GFHAGGHWTVKN 621
                 4777777777..556666677777778***********************99999.54444.789999988876 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.8
      DUF748  77 lelslkgldLapl 89 
                  ++sl++++L++l
  EHU00697.1 714 ARVSLRDISLSKL 726
                 4555555555444 PP

>> NPR2  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.5e-06     0.051     324     369 ..     819     863 ..     783     868 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-06
        NPR2 324 sskkvteakadeeevevkvpskttlfrLyrslkqgqtvkeWvlqek 369
                  + +    ++ ++ v+ +  ++++lf+L+rsl+ g +++ Wv ++ 
  EHU00697.1 819 VQGTSRF-SNRNQTVNLNYRHQENLFQLWRSLRFGDNLQSWVEENA 863
                 4444433.344889999999**********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.19s 00:00:00.80 Elapsed: 00:00:00.36
# Mc/sec: 7260.50
//
Query:       EHU00698.1  [L=330]
Description: fermentative D-lactate dehydrogenase, NAD-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-53  179.9   0.0    4.5e-53  179.2   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.3e-33  115.5   0.0    1.4e-33  115.4   0.0    1.0  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0027   17.8   0.0     0.0051   16.9   0.0    1.4  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
     0.0064   17.0   0.0      0.022   15.3   0.0    1.9  1  CoA_binding_2  CoA binding domain
     0.0075   16.4   0.0      0.031   14.5   0.0    1.9  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.047   14.2   0.0       0.14   12.6   0.0    1.8  1  XdhC_C         XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   0.0   1.5e-56   4.5e-53       1     178 []     110     297 ..     110     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 1.5e-56
                   HHHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivsl 97 
                   ++l++ l+rr+++a++++r+ ++ s + l+g ++++kt GiiG+G+IG a+ ++lk+fgm+++a+d+++++  ++ +lg+e+v+l++l+aes +++l
    EHU00698.1 110 VGLMMTLNRRIHRAYQRTRDANF-SLDGLTGFNMHNKTAGIIGTGKIGIATLRILKGFGMRLLAFDPYPSE--QALSLGAEYVDLKTLFAESHVITL 203
                   689********************.99******************************************884..46899******************* PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSS..........SSGTC...HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeee..........plped...spllelpnviltPHia 178
                   h+pltpe++hl+na+++a+m++g+++iNt+RGgl+d +a ++aLk++ki++ ++Dv+e+e          ++ +d    +l  ++nv++t H a
    EHU00698.1 204 HCPLTPENHHLLNANAFAQMRDGVMIINTSRGGLIDSQAAIDALKQQKIGALGMDVYENErdlffedksnDVIQDdifRRLSACHNVLFTGHQA 297
                   **************************************************************999988874444434458899*********87 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   4.8e-37   1.4e-33       2     133 ..       4     328 ..       3     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 4.8e-37
                 EEEST.CHHHHHHHHH...TTE.EEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHH..TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTT CS
                 xxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellke...egv.evevkdellteellekakdadalivrsntkvtaevleal..pkLkviaragvGvDnvDldaakerGilVtnvpgys 94 
                 +++++ ++++++++++   ++  +++++d ll+e +++ a d+da+++++n++ ++ vle+l   ++k+ia++++G++nvDl+aa+e+G+ V++vp+ys
  EHU00698.1   4 AVYST-KHYDQKYFEQvnkQYGfDLVFYDFLLSESTAKTAVDCDAVCLFVNDDGSRPVLEELaeLGVKFIALRCAGFNNVDLKAAAELGLEVVRVPAYS 101
                 67766.89999999999985556***************************************999********************************** PP

                 HHHHHHHH........................................................................................... CS
                 xxxxxxxx........................................................................................... RF
  2-Hacid_dh  95 tesvAElt........................................................................................... 102
                 +e+vAE++                                                                                           
  EHU00698.1 102 PEAVAEHAvglmmtlnrrihrayqrtrdanfsldgltgfnmhnktagiigtgkigiatlrilkgfgmrllafdpypseqalslgaeyvdlktlfaeshv 200
                 *************************************************************************************************** PP

                 .................................................................................................T- CS
                 .................................................................................................xx RF
  2-Hacid_dh 103 .................................................................................................aa 104
                                                                                                                  ++
  EHU00698.1 201 itlhcpltpenhhllnanafaqmrdgvmiintsrgglidsqaaidalkqqkigalgmdvyenerdlffedksndviqddifrrlsachnvlftghqaFL 299
                 *************************************************************************************************** PP

                 BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 105 Teeaqeniaeeaaenlvaflkgespanav 133
                 T ea+ +i e+++enl +  +ge+++n+v
  EHU00698.1 300 TAEALTAISETTLENLSRLHRGEDCPNRV 328
                 ***************************98 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.7e-06    0.0051      19     125 ..     140     251 ..     132     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
                    S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE....-SSSSSSB-HHHHCCS-TTEEEEE-. CS
  AdoHcyase_NAD  19 vllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvt....ttGnkdiitlehlkkmkddaivcni. 109
                    + +  k+a ++G G +G  + + lkg+G r++    dP  + qa+  G e v l+++ ++++++      t  n+ +++++ +++m+d +++ n  
     EHU00698.1 140 FNMHNKTAGIIGTGKIGIATLRILKGFGMRLL--AFDPYPSEQALSLGAEYVDLKTLFAESHVITLhcplTPENHHLLNANAFAQMRDGVMIINTs 233
                    5577899**********************987..58*************************99864233256899****************99974 PP

                    ..SSTTTTBTHHHHHTTT CS
  AdoHcyase_NAD 110 ..Ghfdseidvaaleana 125
                      G  ds+  ++al++++
     EHU00698.1 234 rgGLIDSQAAIDALKQQK 251
                    445677777777777764 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.3e-06     0.022      49     106 ..      38      95 ..      32     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.3e-06
                    -T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHHHHTT-EEE CS
  CoA_binding_2  49 laedpepvdlvdvftppeatpeivkealalgakavwlqpgsedeeaaelaeeagirvv 106
                    +a+   ++d+v++f++ +   ++++e+++lg+k + l  + +++  +++a+e g++vv
     EHU00698.1  38 TAKTAVDCDAVCLFVNDDGSRPVLEELAELGVKFIALRCAGFNNVDLKAAAELGLEVV 95 
                    443247899*******************************************999998 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.95   2.8e+03      45      66 ..      34      55 ..       4      71 .. 0.70
   2 !   14.5   0.0     1e-05     0.031       3     116 ..     148     259 ..     146     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.95
                   E-SSHHHHHHHCSEEEE-SSSH CS
  NAD_binding_2 45 aaesieelvasldvvitmvkag 66
                   + es ++ + ++d+v ++v+++
     EHU00698.1 34 LSESTAKTAVDCDAVCLFVNDD 55
                   5677778888888888888764 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1e-05
                    EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHHH CS
  NAD_binding_2   3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspedt 97 
                    g+iG+G++G    + l+  g+++ +++      e++++ ga+ + +++ l+a+  v+ +  + +++  ++++   +++++ g ++i++s     d+
     EHU00698.1 148 GIIGTGKIGIATLRILKGFGMRLLAFDPY--PSEQALSLGAEYV-DLKTLFAESHVITLHCPLTPENHHLLNAnAFAQMRDGVMIINTSRGGLIDS 240
                    99************************966..5677888888666.5677888889**********999999999********************** PP

                    HHHHHHHHHTT-EEEEEEE CS
  NAD_binding_2  98 relakelkekglkfldaPV 116
                    +   ++lk++++  l++ V
     EHU00698.1 241 QAAIDALKQQKIGALGMDV 259
                    **************99866 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.8e-05      0.14       3      77 ..     149     257 ..     148     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
                 EE--STTHHHHHHHHHHHTEEEEEEES-G.GGG..................................-GGG-TT-SE.-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C   3 ifGaghvaqalarlaaalgfrvtvvdpre.efa..................................tkerfpeade.tavvvlthdhklDaealeaal 65 
                 i+G g+++ a  r+++ +g+r+  +dp + e a                                  +++ f++ ++  +++  +++  +D +a   al
  EHU00698.1 149 IIGTGKIGIATLRILKGFGMRLLAFDPYPsEQAlslgaeyvdlktlfaeshvitlhcpltpenhhllNANAFAQMRDgVMIINTSRGGLIDSQAAIDAL 247
                 89***************************5555999999999998888888888888888877766666666655555556666677899********* PP

                 SS--SEEEESS- CS
      XdhC_C  66 rkkaayigllGS 77 
                   k + ig+lG 
  EHU00698.1 248 --KQQKIGALGM 257
                 ..7778888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2395.81
//
Query:       EHU00699.1  [L=91]
Description: uncharacterized DUF333 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.6   0.4    2.1e-13   50.2   0.4    1.2  1  DUF333    Domain of unknown function (DUF333)
  ------ inclusion threshold ------
      0.011   16.2   4.2      0.024   15.1   4.2    1.7  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s
      0.074   13.3   0.8      0.086   13.1   0.8    1.0  1  Lir1      Light regulated protein Lir1


Domain annotation for each model (and alignments):
>> DUF333  Domain of unknown function (DUF333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.4   3.6e-17   2.1e-13       6      47 ..      46      87 ..      42      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3.6e-17
      DUF333  6 AsvyCvkqGGkleiakdadGgqvgyCqlpdGkrceEwaLyrg 47
                A++ C+++GG+l+ ++++dG+++g+Cql +G+rc+E+aL+ g
  EHU00699.1 46 AEASCTNAGGTLAFSNQLDGSRIGMCQLVNGRRCSEQALLGG 87
                8999***********************************865 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   4.2   3.9e-06     0.024       5      18 .]       6      19 ..       1      19 [. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.9e-06
      LPAM_1  5 llalgalllLsGCs 18
                +l++ga+llLs+Cs
  EHU00699.1  6 FLLAGAALLLSACS 19
                9************9 PP

>> Lir1  Light regulated protein Lir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8   1.4e-05     0.086       1      82 [.       1      82 [.       1      85 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
        Lir1  1 mqaalsivaalvlvlpaavklkklailspakvaasslsslrsrvraaaa.vavdastvDysssisvfPaeaCdligGeaCsad 82
                m+aa+++ a+  l l+a  + ++   + p++ +a++ +++ +    a a  + +  t  +s ++    +  C+l+ G  Cs +
  EHU00699.1  1 MKAATFLLAGAALLLSACSSNSD-DNEPPQQATAAHVQPRVVMSAMAEAsCTNAGGTLAFSNQLDGSRIGMCQLVNGRRCSEQ 82
                89999999998888887777665.77888888899999988877777766899999********999*************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 705.62
//
Query:       EHU00700.1  [L=218]
Description: peptide transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-40  137.0  11.9    5.2e-40  136.6  11.9    1.2  1  MgtC      MgtC family


Domain annotation for each model (and alignments):
>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6  11.9   2.9e-44   5.2e-40       1     119 [.       9     137 ..       9     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 2.9e-44
        MgtC   1 LllAlllGlliGleRelrekaaGlRTfaLvalgaalfvllslelae............srvaaqvvsgigflgagvilkekegakvkglTTaaslwvta 87 
                 ++lA +lG+liGleR++r k aGlRT++Lv++g+a+f+l+s + ++            srvaaqvvsg+gflgag+il   +++ vkglTTaa+lwvta
  EHU00700.1   9 IALAGILGGLIGLERQMRAKEAGLRTHILVGIGSAMFMLVSKYGFAdmlmkdhvaldpSRVAAQVVSGMGFLGAGTIL--IQKQVVKGLTTAAGLWVTA 105
                 5799****************************************999*******************************..55559************** PP

        MgtC  88 aiGllvglglyllavvatvlvllllallrele 119
                 aiGl++g g+y +++ +tvl+l++l ++r+l+
  EHU00700.1 106 AIGLVIGSGMYEIGIYGTVLALVVLEVFRRLS 137
                 *****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1916.43
//
Query:       EHU00701.1  [L=311]
Description: putative tRNA 2-thiocytidine (s(2)C32) synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-11   43.9   0.0    4.5e-11   42.8   0.0    1.5  1  ATP_bind_3  PP-loop family


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   2.5e-15   4.5e-11       2     160 ..      42     204 ..      41     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 2.5e-15
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H......HHCTTSTCCCHHHHHHHHHHHHCHHC CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdv......akkkgknleeaARelRYevlkealkk 94 
                 ++v +SgG DS ++l +l +l+k+  +++ ++ v+   ++      +++ e+ +  +++++i + d+      +  +gk++     +lR  +l +++ +
  EHU00701.1  42 IMVCLSGGKDSYTMLEILRSLQKSAPVSFSLVAVNLDQKQPG-FPGHILPEYLEAQGVEYKIVEEDTysivkeKIPEGKTTCSLCSRLRRGILYRTATE 139
                 7899***********************999999998877654.556777888888888888888887777754444577777888899*********** PP

                 CT.CEEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEE..TTCCEE-CCCT--HHHHHHHHHHTT CS
  ATP_bind_3  95 egievlllAhhadDqaEtfllrlargsglaglagikeasei..asirlvRPlLkvskeeleeylkekk 160
                  g++ ++l+hh+dD + t++l+++ g ++    g++++      +  ++RPl  ++ +++ ++ + ++
  EHU00701.1 140 LGCTKIALGHHRDDILQTLFLNMFYGGKM---KGMPPKLMSddGKHIVIRPLAYCREKDIIRFSEARQ 204
                 *************************8886...67777655521457889*******999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2449.47
//
Query:       EHU00702.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00702.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00702.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00702.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00702.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 791.00
//
Query:       EHU00703.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00703.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1053.58
//
Query:       EHU00704.1  [L=327]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-30  105.5   2.0    9.7e-29  100.7   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    7.7e-15   55.0   1.5    1.8e-14   53.8   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    5.9e-12   46.2   9.0    1.2e-11   45.2   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0073   16.1   6.2      0.011   15.6   6.2    1.1  1  FAM184           Family with sequence similarity 184, A and B
     0.0083   16.4   4.6      0.046   14.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
  ------ inclusion threshold ------
      0.013   15.1   0.6      0.015   14.9   0.6    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
      0.013   14.7   1.7      0.021   14.0   1.7    1.2  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.021   13.4   6.8      0.027   13.0   6.8    1.1  1  FUSC             Fusaric acid resistance protein family
       0.03   14.6   3.1       0.05   13.9   3.1    1.3  1  Troponin         Troponin
       0.04   13.6   2.7       0.18   11.5   0.5    2.1  2  LXG              LXG domain of WXG superfamily
      0.073   12.3   1.8        0.1   11.8   1.8    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.083   12.7  10.8       0.12   12.2  10.8    1.1  1  ERM              Ezrin/radixin/moesin family
       0.14   12.3   1.7       0.58   10.3   0.1    2.4  2  Zn-ribbon_8      Zinc ribbon domain
       0.19   11.8   5.3        1.9    8.6   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.19   11.8  10.9        0.3   11.1  10.9    1.2  1  DHR10            Designed helical repeat protein 10 domain
       0.24   11.2   2.2       0.46   10.3   2.2    1.4  1  RD3              RD3 protein
       0.57    9.4   3.1       0.81    8.9   3.1    1.1  1  TMPIT            TMPIT-like protein
       0.65    9.8   3.8          1    9.2   3.8    1.2  1  PCRF             PCRF domain
       0.84    9.4   3.5        4.2    7.1   3.7    2.0  2  USP8_interact    USP8 interacting
        1.2    8.7   7.8        2.5    7.6   7.8    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.5    9.6   4.9        1.2    9.9   3.0    1.8  1  LCE6A            Late cornified envelope protein 6A family
        2.2    8.6   8.0        3.3    8.1   8.0    1.2  1  OmpH             Outer membrane protein (OmpH-like)
        3.3    8.1   8.1       0.29   11.5   3.1    1.8  1  HalX             HalX domain
        4.8    7.9   9.3        7.7    7.2   2.1    2.7  2  SlyX             SlyX
          6    7.5  10.0        5.7    7.6   0.5    2.5  2  MerR-DNA-bind    MerR, DNA binding
        6.5    6.8   8.5        5.2    7.2   0.6    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.9     0.082        56     167     214 ..      34      82 ..      20     121 .. 0.50
   2 !  100.7   0.0   1.4e-31   9.7e-29       2     100 ..     187     285 ..     186     312 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.082
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU00704.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   57777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 100.7 bits;  conditional E-value: 1.4e-31
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00704.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr 100
                   +r
    EHU00704.1 284 DR 285
                   97 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.5   2.6e-17   1.8e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00704.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   9.0   1.8e-14   1.2e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.8e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00704.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.2   1.5e-05     0.011     114     196 ..      10      96 ..       7     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00704.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888887777765557777889**************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   6.6e-05     0.046      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    3.7   0.5      0.12        81      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.6e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00704.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.12
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00704.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.6   2.2e-05     0.015     144     230 ..      10     102 ..       3     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk.....e 230
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++     +
    EHU00704.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQHdpalpQ 102
                   33444555555555666666677789999999999988886655439999**************************99944.333333223331 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.7   3.1e-05     0.021      47     106 ..      34      90 ..      24      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00704.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.8   3.9e-05     0.027     213     294 ..       4      89 ..       1     123 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU00704.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 44889***********************************999**********999996667888888888888888888877766 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.1   7.2e-05      0.05      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU00704.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444455556666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   0.00025      0.18     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.5   0.1      0.14        99      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00025
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00704.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.14
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00704.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877666 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.8   0.00015       0.1      24      76 ..      37      91 ..      16     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00704.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                579***************55553233356667777888889999*******9986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  10.8   0.00017      0.12      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00704.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66889999999**********************************999999887335577789*******************9865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00084      0.58      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?    0.3   0.1       1.1   7.8e+02       7      14 ..     167     174 ..     154     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00084
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00704.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.1
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00704.1 167 ACCSCDHI 174
                  35555555 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0028       1.9      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    4.2   1.2     0.067        46      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0028
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00704.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.067
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00704.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.9   0.00044       0.3      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00044
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00704.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.2   0.00066      0.46      45     127 ..      16      95 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00066
         RD3  45 keeeerkaetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevlaenevevkeivelfksvlkevleer 127
                  +e++   ++ ++Y++l s+        ase ++L  l ak++  + gk  +++re++a +  e++e +++++  + evl e+
  EHU00704.1  16 LQEQQTTIRKMAEYNRLLSQR---VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQ 95 
                 5667777888899*****965...455799*************************************9999999999988776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.1    0.0012      0.81      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00704.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445555555555555555555777777665 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.8    0.0015         1      19      96 ..      18      96 ..       6     100 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0015
                TTGGGSSSTTHHHHHTHHHHHHH.HHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSS CS
        PCRF 19 edqekakklskelaeleeiveal.eeleealedleeakell..eedeelaelaeeeleelekeleeleeelkklLlpkden 96
                e+q++++k+++  + l++ v+a+ +e++++++ +++++++   ++ e+l+e    +++e+e+++++l+ee+ ++L   +++
  EHU00704.1 18 EQQTTIRKMAEYNRLLSQRVAAYaSEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLG--EQH 96
                33334444333333344444433144555555555555565334778999999999******************98..333 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.7    0.0061       4.2       2      49 ..      12      61 ..      11      91 .. 0.80
   2 ?   -1.5   0.0       2.7   1.9e+03      65      84 ..     217     236 ..     195     249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0061
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHU00704.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgK 61
                   9***************************************9998766552 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.7
  USP8_interact  65 rWveslklarvtrWGglist 84 
                    r + +l++a++ rW g +s 
     EHU00704.1 217 RQGVELSRATLGRWSGAVSE 236
                    35678999999999999985 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.8    0.0036       2.5      70     152 ..      13      97 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0036
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00704.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.0    0.0017       1.2      17      71 ..     115     172 ..     101     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0017
       LCE6A  17 cspPkrknpslapcsapCgasc....sgGCsstsqrpraqkpvssrrahrkkprCLsGd 71 
                  s+P r+ ++l+p  ++C+a      + GC+ ++q   + ++    + +r+k+ C s d
  EHU00704.1 115 ASLP-RETLTLSPAETTCPACGgelnALGCDVSEQLELISSAFKVIETQRPKLACCSCD 172
                 3566.56789999999999877777788*******99999999999*********9876 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.0    0.0047       3.3       9      83 ..      14      92 ..      10     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0047
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU00704.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                56777778888899999999*********************966655.23466666666667777777777444444444 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.1   0.00042      0.29       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00042
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00704.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.1     0.011       7.7      22      53 ..      12      43 ..       7      65 .. 0.88
   2 ?    3.1   2.0      0.21   1.5e+02      34      57 ..      68      91 ..      44     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00704.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                7778899******************9887665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.21
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00704.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888889999998888887654 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   3.4      0.15   1.1e+02      21      64 ..      13      56 ..      10      57 .. 0.84
   2 ?    7.6   0.5    0.0083       5.7      32      60 ..      61      89 ..      58     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.15
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHU00704.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   778866666777777888***********************997 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0083
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHU00704.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   5788999*****************98655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.6    0.0075       5.2      23      69 ..      11      57 ..       7      62 .. 0.87
   2 ?    3.4   2.1      0.11        79      45      70 ..      63      88 ..      58      92 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0075
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHU00704.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                5666678899*************************999999999875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
  TMF_DNA_bd 45 lekeikelkkkleklekeleeleerl 70
                +ek  +++ +++++ e+ ++ l+e++
  EHU00704.1 63 SEKLREKTARQVREAEERISALQEEM 88
                55566666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1636  (0.0912488); expected 358.6 (0.02)
Passed bias filter:                     1096  (0.06113); expected 358.6 (0.02)
Passed Vit filter:                       162  (0.00903564); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.35
# Mc/sec: 2763.04
//
Query:       EHU00705.1  [L=182]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-41  140.5   0.1    8.1e-41  140.3   0.1    1.0  1  DDE_Tnp_IS66    Transposase IS66 family
    1.3e-16   60.5   0.1    2.9e-16   59.4   0.1    1.6  1  DDE_Tnp_IS66_C  IS66 C-terminal element
  ------ inclusion threshold ------
       0.11   13.1   0.1       0.33   11.6   0.1    1.8  2  WGG             Pre-rRNA-processing protein TSR2


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.1   1.4e-44   8.1e-41     150     281 ..       1     131 [.       1     132 [. 0.97

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 1.4e-44
  DDE_Tnp_IS66 150 waHlrRkfvdaeeakkksqaaaealarigklyaiereareaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfle 246
                   +aH+rRk++d++ +++ +++++eal+rigklyaie+e+r  +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ 
    EHU00705.1   1 MAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIRGSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCS 96 
                   79************98.*********************94479****************************************************** PP

  DDE_Tnp_IS66 247 dgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                   +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00705.1  97 NGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 131
                   *********************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   4.9e-20   2.9e-16       1      39 []     138     175 ..     138     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 4.9e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00705.1 138 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 175
                     9************************9.************ PP

>> WGG  Pre-rRNA-processing protein TSR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   5.5e-05      0.33       4      29 ..      80     105 ..      78     117 .. 0.81
   2 ?   -3.1   0.0       2.3   1.4e+04      29      42 ..     151     164 ..     138     171 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.5e-05
         WGG   4 gvalilhlWtaLklavengwggpdsa 29 
                 + a +l++W+aL+l  +ngw   d +
  EHU00705.1  80 AFAYLLKQWDALNLYCSNGWAEIDNN 105
                 56889***************987765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
         WGG  29 adkrdwlagaivdl 42 
                 +   + ++g+i d+
  EHU00705.1 151 ETWLRYVIGHIQDW 164
                 44444445555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1364.82
//
Query:       EHU00706.1  [L=327]
Description: putative Zn(II) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-63  212.2   0.0    1.1e-62  212.0   0.0    1.0  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   6.2e-67   1.1e-62       3     292 .]      39     323 ..      37     324 .. 0.97

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 6.2e-67
        CorA   3 gfvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkde 101
                 + +Wl+l+ +++   e+L+ + ++++ + + l+ ++ rprv+  +d++ +vl+sv+++ + ++++ v+++++++d++++++rr+++ a+dev  +l+ +
  EHU00706.1  39 HPCWLHLNYTHPRSAEWLQSTPQIPDAVRDALAGESMRPRVSRLGDGFMIVLRSVNHNSDARPDQLVAMRVFINDQLIVSTRRRKVFAVDEVLTDLE-N 136
                 569*************************9999999**************************************************************.9 PP

        CorA 102 ggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdllde 200
                 g++p ++g++l +++d+++ +  e +e+l++++ eled l  +++ + ++el  lr++l+ +rr++ap+r+v+ ++la++  +++dd ++++++++ d+
  EHU00706.1 137 GNGPVNCGSWLVEVCDALTGHTSEFIEDLHDKIIELEDAL-LDQRIPPRGELGLLRKQLIVMRRYMAPQRDVF-ARLASEKLPWMDDSERRRMQEIADR 233
                 9***************************************.8899999*************************.77777******************** PP

        CorA 201 lerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfkr 292
                 l r l++l+a   r+ +l d+ +s+++e +Nr  ++++++++iflP+T++tG++G N +g+P+ +w y  +f ++++l ++la+++  ++++
  EHU00706.1 234 LGRGLDDLDAGVARTAVLADEVASVMAESMNRRTYTMSLMAMIFLPATFLTGLFGVNLGGIPGGGWRY--GFSVFCILLVILALGVAGYLRK 323
                 **************************************************************999999..77777***********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2574.65
//
Query:       EHU00707.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU00707.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU00707.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU00707.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU00707.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU00707.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU00707.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU00707.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU00707.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU00707.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU00707.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU00707.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU00707.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU00707.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU00707.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU00707.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU00707.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU00707.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2282.77
//
Query:       EHU00708.1  [L=539]
Description: periplasmic-binding component of an ABC superfamily murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-87  293.7   7.5    2.8e-87  293.1   7.5    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
      0.022   14.2   0.4       0.12   11.7   0.0    2.3  3  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   7.5   3.1e-91   2.8e-87       1     374 [.      78     457 ..      78     459 .. 0.95

  Alignments for each domain:
  == domain 1  score: 293.1 bits;  conditional E-value: 3.1e-91
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC..............TCTEEEEEEEETTEEEEEESSE CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee..............dqdikkveavddytvrftlkkp 85 
                 ++vp++A+s w+ s D+k+++f+LR ++++sDG+p+tA+D+v+s++r++dp+t+s+ as+ +               + d  +v+a+d++ +++tl++p
  EHU00708.1  78 KIVPGVAQS-WS-SSDNKVWIFTLRNNARWSDGEPVTAQDFVYSWQRVVDPKTSSSQASFVALsglseadaiakgttTPDKLGVTALDKHRLKVTLSRP 174
                 69*******.45.************************************************99************************************ PP

                 TTTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCC CS
   SBP_bac_5  86 nalfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaeppps 184
                  + f++++++v+  ++ +   +++ + ++ + k+vg+G+Y+l++ + ++kivl+rnp Yw++    l +++f  i++++++    ++G++d+ +++p +
  EHU00708.1 175 VPWFPAMVSNVAFYPVPQRVIQKEGDQWTQPGKLVGNGAYQLDSRVVNEKIVLVRNPRYWDNAHSVLTKVTFLPINEESSATKRYRAGDVDITESFPKN 273
                 ****************9999999999**********************************99999**********6666666666*****999999999 PP

                 THCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH...SHHHHHHHHHH CS
   SBP_bac_5 185 dieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka...ydpekAkklLk 280
                 + + lk++   +v y+  ++g++y+afNt++ p +d+rvR+Als  iDr+ i+++vl+ + +pa  ++p + +g+ + +  + ++      ++A++lL+
  EHU00708.1 274 MYALLKKTLPGQV-YTPDQLGTYYYAFNTQQGPTADARVRKALSWSIDRQVIADKVLGTGEKPAWHFTPDVTAGFTPLPALQQQHnqqEMDAQARALLA 371
                 9999999999999.******************************************************************999887763369******* PP

                 HTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTC CS
   SBP_bac_5 281 eaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssg 374
                 +aGy   +        ++ ++ll+++s+ +++ia ++++++kk +G++v++++ +w +ty +++++g fd+i  +w +dy +p++fl  ++s+++
  EHU00708.1 372 AAGYGPAK--------PLKLTLLYNTSESHQKIAIAVASMWKKnLGVDVKLENQEW-KTYIDSRNSGRFDVIRASWVGDYNEPSTFLTLLTSGTS 457
                 ******97........5799************************************.*******************************9999886 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.19   1.7e+03     132     206 ..     243     315 ..     191     321 .. 0.63
   2 ?   11.7   0.0   1.4e-05      0.12      25      64 ..     397     436 ..     388     439 .. 0.90
   3 ?   -1.7   0.0      0.18   1.6e+03      48      68 ..     457     477 ..     450     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.19
                 TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 132 gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseLrkainkal 206
                 +++  + +  ++a+++ ++g vd +     +++ l+kk   ++v+   ++  + +y+++  +++++  + + kal
  EHU00708.1 243 KVTFLPINEESSATKRYRAGDVDITESFPKNMYALLKKTLPGQVYT--PDQLGTYYYAFNTQQGPTADARVRKAL 315
                 4455566777777777888888855444444444444444444444..556666666666666666555555555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  25 dvdlakaiakrlgvkvefvpvswdelipalksgkvDiaia 64 
                  + +a    k lgv+v++++++w++ i++ +sg++D++ a
  EHU00708.1 397 AIAVASMWKKNLGVDVKLENQEWKTYIDSRNSGRFDVIRA 436
                 577888999**********99***************9866 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.18
                 GGHHHHHHTTSSSEEESSEB- CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  48 delipalksgkvDiaiaaiti 68 
                 ++ ip  k+ ++D++ia  ++
  EHU00708.1 457 SSNIPRFKNAEYDAVIAKASM 477
                 566888888899999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4346.12
//
Query:       EHU00709.1  [L=235]
Description: murein peptide amidase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-14   52.3   0.1    2.4e-13   50.6   0.1    1.7  1  Peptidase_M14  Zinc carboxypeptidase
    1.4e-06   27.6   0.2    1.8e-06   27.3   0.2    1.2  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
    1.7e-05   24.4   0.1    2.3e-05   24.0   0.1    1.2  1  DUF2817        Protein of unknown function (DUF2817)


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.1     4e-17   2.4e-13      42     183 ..      35     158 ..       9     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 4e-17
                    TTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSS CS
  Peptidase_M14  42 aeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdl 137
                    +++  +  li +g+H++E  + a+l  +l+ L             l++   +++  +NPDG ++           r+na+     GvDlnRnFp+ 
     EHU00709.1  35 NQTDSNSGLILAGTHGDENAAIATLSAALRTLPDG----------LRRH--HVVLAVNPDGCQLGL---------RANAN-----GVDLNRNFPAA 104
                    35567777889999999999999999999999875..........4444..79*************.........*****.....*********99 PP

                    .TTSS.....S..SBSSTTSTTBHHSSTT.SHHHHHHHHHHHHTTEEEEEEEEE CS
  Peptidase_M14 138 .wnse.....g..astspcsetyrgpapfsepetravlefiqkknivlfidlhs 183
                     w+s+     +  a ++       g++p+sepet+a++++i++ +   ++++h 
     EHU00709.1 105 nWQSGetvyrWnsAADARDVTLSTGAHPASEPETQALCSLIHQLKPAWVVSWHE 158
                    995555577741344555566789***************************996 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.2     3e-10   1.8e-06       4      73 ..      41     107 ..      38     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3e-10
                 EEEEEE-SSTT-HHHHHHHHHHHHHHHCCCESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC CS
   AstE_AspA   4 kvlisAGvHGnElaGvellrqllkqleeadilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg 73 
                 + li AG+HG+E a++++l   l+ l  +  l++  +v+ +Np + + g R    +  dLNR Fp  + +
  EHU00709.1  41 SGLILAGTHGDENAAIATLSAALRTLPDG--LRRHHVVLAVNPDGCQLGLRANA-NGVDLNRNFPAANWQ 107
                 679***********************977..677788999**************.**********87766 PP

>> DUF2817  Protein of unknown function (DUF2817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   3.9e-09   2.3e-05      56     120 ..      44     103 ..      30     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.9e-09
     DUF2817  56 ltsGthGveGfaGSavqvalLrealakllaegvavLlvhalNPyGfahlrrvnedNVDLnRNfld 120
                 + +GthG e  a  a   a+Lr  l++ l++   v    a+NP G +   r n + VDLnRNf +
  EHU00709.1  44 ILAGTHGDENAA-IATLSAALRT-LPDGLRRHHVV---LAVNPDGCQLGLRANANGVDLNRNFPA 103
                 457888877655.4556677776.45555555544...499**********************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1910.60
//
Query:       EHU00710.1  [L=327]
Description: L-Ala-D/L-Glu epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-26   92.0   2.0    5.8e-26   91.4   2.0    1.2  1  MR_MLE_C   Enolase C-terminal domain-like
    3.2e-23   82.2   0.0    5.9e-23   81.3   0.0    1.5  1  MR_MLE_N   Mandelate racemase / muconate lactonizing enzyme, 
  ------ inclusion threshold ------
      0.077   12.1   0.0       0.13   11.4   0.0    1.3  1  MAAL_C     Methylaspartate ammonia-lyase C-terminus
       0.87    9.3   3.7        5.2    6.8   0.3    2.5  2  Ezh2_MCSS  MCSS domain


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   2.0   1.3e-29   5.8e-26       2     204 ..     133     319 ..     132     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 1.3e-29
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHHSSE CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrarasip 100
                 +a +a++l++  g + +K+k+         er+ a+r+av p+  ++l+vDan++w+++    +++ l++l++++lE+P+p+ +  e+la     +++p
  EHU00710.1 133 MASSAQALWQH-GATLLKIKMDN---NFITERLMAIRAAV-PD--ATLIVDANESWHAEGLAARCQLLADLEIAMLEQPLPAGE-DEALANFI--HPLP 221
                 67788777775.********555...56678*********.75..5************************************65.77788877..489* PP

                 EEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSC.SSHHHHHHHHHHHHTTTTBEEEEEEGGGGH.TSGCSBSSSS CS
    MR_MLE_C 101 iaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsg.sgglglaaslhlaaaipnllileyfldael.leeelleepl 197
                 i+a+Es+++r+ + +l   g  d+v++++ ++gG+tea+++a+ a+  g +++++++ +++ +  a+l l   +   ++++ +      + +  +e++l
  EHU00710.1 222 ICADESCHTRESLPAL--HGRYDMVNIKLDKAGGLTEALALAQAARDQGFTLMLGCMiCTSRAIRAALPLVPMV---RFADLDG---AtWLAVDVEPAL 312
                 ****************..999***********************************723455555555554444...3333333...236777888888 PP

                 EEETTEE CS
    MR_MLE_C 198 evedGrv 204
                 +v++G +
  EHU00710.1 313 KVQNGAL 319
                 8888855 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.3e-26   5.9e-23       2     117 .]       2     112 ..       1     112 [. 0.96

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.3e-26
                 EEEEEEEEEEEEC.EEEETTEEEEEEEEEEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSSCHHHHHHHHHH CS
    MR_MLE_N   2 ievvvveeavklr.PvqlavttvqkqslvlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlgnmsAkaaidmA 99 
                 ++v+   ea++l+ P+++a++++ ++++v+v+ie ++Gv+G+geat+++     ++ e+++ + +++    ++  ++l++++ +  l++ +A++aid+A
  EHU00710.1   2 RTVKCYPEAWPLHtPFVIARGSRTEAKVVVVEIE-ENGVKGTGEATPYT-----RYGESEALVLEHIATVMPQLQQGLTREALQTLLPAGAARNAIDCA 94 
                 7899999***************************.**************.....99999999999999******************************* PP

                 HHHHHHHHTTSBHHHHTT CS
    MR_MLE_N 100 lwDlkakalnlpladLlG 117
                 lwDl+a+++   l + +G
  EHU00710.1  95 LWDLAARQQHRTLEQVVG 112
                 **********99999887 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.9e-05      0.13     138     197 ..     218     275 ..     208     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.9e-05
      MAAL_C 138 ikvelvaDeWcntledirefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGG 197
                   + + aDe c t e + +   ++  d+v ik    Gg+++++   + ++++g   +lG 
  EHU00710.1 218 HPLPICADESCHTRESLPAL--HGRYDMVNIKLDKAGGLTEALALAQAARDQGFTLMLGC 275
                 566799*********99876..6889***************************9999985 PP

>> Ezh2_MCSS  MCSS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3      0.02        89      17      40 ..     222     249 ..     221     261 .. 0.66
   2 ?    6.8   0.3    0.0012       5.2      12      20 ..     272     280 ..     268     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.02
                 TT--SSSS........-SEE-TTS-EE-SSGG CS
   Ezh2_MCSS  17 iCfshsCe........HGeydadNekrtfSld 40 
                 iC   sC         HG yd  N+k    ld
  EHU00710.1 222 ICADESCHtreslpalHGRYDMVNIK----LD 249
                 56666664444555559*****9998....45 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0012
                 HHSBTTT-- CS
   Ezh2_MCSS  12 iLgCliCfs 20 
                 +LgC+iC s
  EHU00710.1 272 MLGCMICTS 280
                 79*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2434.12
//
Query:       EHU00711.1  [L=167]
Description: lipid hydroperoxide peroxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28   99.4   0.0    1.7e-28   99.2   0.0    1.0  1  Redoxin   Redoxin
    2.3e-15   56.6   0.0    2.7e-15   56.4   0.0    1.1  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.9e-32   1.7e-28       1     147 []      20     163 ..      20     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.9e-32
                 -TTSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.HHHHHHHTT-TSEEEE-..TTSH CS
     Redoxin   1 kagdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.vkefwgkeglkfpvlsD..gsaa 96 
                 ++gd+a+ ftl  +a++  +vslse++gk++++n++p+ ++++C  ++   +k+++l++e +++vv +++++ +f +++f+g+++l+++v+++  ++++
  EHU00711.1  20 QPGDSAKPFTL--VAKNLANVSLSEYAGKRKILNIFPSVDTGVCASSV---RKFNQLAGELNNTVVLCISADLPFaQSRFCGADNLNNVVTLStlRGGE 113
                 689*******8..88*******************************99...***************************************999999*** PP

                 HHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHTSTTSHHHHH CS
     Redoxin  97 ftkalGlrleedaseglrtpryavidedgkvvylevepepeteesnaeavl 147
                 f +++G++++  a +gl +++++v+de+++v y ++++e +t e++++a+l
  EHU00711.1 114 FKQDYGVEIADGALQGLTARAVIVLDEHDNVLYSQLVNEITT-EPDYDAAL 163
                 ****************************************76.****9987 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     3e-19   2.7e-15       2     123 ..      22     146 ..      21     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 3e-19
                 TSB----EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-..TTSHHHHHT CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsD..eegkvakay 98 
                 gd a+ f+l  ++  +vsls+y+gk  +l+++p+ ++ vC   ++++++l+ e+   +  v+ +s+d p+++ +f+ +++ln  + +   + g++ ++y
  EHU00711.1  22 GDSAKPFTLVAKNLANVSLSEYAGKRKILNIFPSVDTGVCASSVRKFNQLAGELN--NTVVLCISADLPFAQSRFCGADNLNNVVTLStlRGGEFKQDY 118
                 99*****************************************************..99*********************876666665899******* PP

                 T-EETT...TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  99 gvlkee...kglalratfvidkegkiry 123
                 gv   +   +gl+ ra++v+d++ ++ y
  EHU00711.1 119 GVEIADgalQGLTARAVIVLDEHDNVLY 146
                 **********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1218.35
//
Query:       EHU00712.1  [L=523]
Description: tyrosine-binding DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-61  205.1   0.0    8.8e-61  204.5   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    3.7e-19   68.1   0.4    7.5e-19   67.1   0.4    1.6  1  HTH_50           Helix-turn-helix domain
      1e-18   67.8   0.0    3.3e-18   66.1   0.0    1.9  1  Sigma54_activ_2  Sigma-54 interaction domain
    1.6e-06   27.7   0.0    3.6e-06   26.6   0.0    1.6  1  ACT              ACT domain
    4.1e-05   23.6   0.0    0.00013   22.0   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00012   22.6   0.0    0.00027   21.4   0.0    1.7  1  ACT_4            ACT domain
    0.00029   21.3   0.0    0.00089   19.7   0.0    1.9  1  AAA              ATPase family associated with various cellul
    0.00077   19.4   0.1     0.0028   17.6   0.1    2.0  1  PAS_8            PAS domain
     0.0036   16.7   0.0     0.0078   15.6   0.0    1.6  1  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
     0.0041   17.1   0.0      0.026   14.5   0.0    2.3  2  PAS              PAS fold
     0.0052   16.3   0.0     0.0091   15.5   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
     0.0077   16.5   0.4       0.44   10.8   0.1    2.9  2  PAS_4            PAS fold
  ------ inclusion threshold ------
      0.034   14.2   0.0      0.091   12.9   0.0    1.7  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.056   12.8   0.1        3.7    6.9   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.11   11.7   0.0       0.17   11.0   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
       0.13   12.1   0.0       0.47   10.3   0.0    2.0  1  HTH_10           HTH DNA binding domain
       0.25   11.7   0.1       0.83   10.0   0.1    1.9  2  NUMOD1           NUMOD1 domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.5   0.0   8.3e-64   8.8e-61       2     167 ..     208     373 ..     207     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 204.5 bits;  conditional E-value: 8.3e-64
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTS CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgG 95 
                      ++ ++++++++eq++k+a +d+++li G++GtGK++lara+h +s r + pf+a+nca++p+++ eseLFGh++Ga+  A + kkG fe+a+gG
       EHU00712.1 208 VAVTPKMRQVVEQARKLAMHDAPLLIIGDTGTGKDMLARACHLRSARGKMPFLALNCASLPDDVAESELFGHAAGAYPNALEGKKGFFEQANGG 301
                      567899**************************************************************************************** PP

                      EEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                       ++LDeige+++++Q+kLlr+l++g+++rvG+++e++v+vr+i+at+++l e v++g+fredL+yrlnv+++
       EHU00712.1 302 SVLLDEIGEMSPTMQTKLLRFLNDGTFRRVGEEHEVHVNVRVICATQKNLFELVQRGEFREDLFYRLNVLTL 373
                      *********************************************************************987 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.4   7.2e-22   7.5e-19       1      49 [.     465     513 ..     465     514 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 7.2e-22
      HTH_50   1 egsLkeyveefErelikkayekYpStRklAkrLGvShtaianklrkYgI 49 
                 eg+L  +   fEr+++ ++y +YpStRklAkrLGvShtaianklr Y++
  EHU00712.1 465 EGTLDQITRRFERSILTRLYLSYPSTRKLAKRLGVSHTAIANKLREYEL 513
                 578999999**************************************86 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   3.2e-21   3.3e-18       4     138 .]     211     378 ..     208     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.2e-21
                      -HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTSEEE CS
  Sigma54_activ_2   4 saaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakggtLy 74 
                      ++++ +  e+  ++a   +p++++G+ G+gk++ Ar+ h  s++   +f   ++a+lp                       + ++eqa+gg  +
       EHU00712.1 211 TPKMRQVVEQARKLAMHDAPLLIIGDTGTGKDMLARACHLRSARGKMPFLALNCASLPddvaeselfghaagaypnalegkKGFFEQANGGSVL 304
                      6777888888889999******************************************999*******************999*********** PP

                      EEE-TT--HHHHHHHHHHHHH.........HT.TTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  75 lkdiadlskaeqkeLlellak.........ae.ksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      l +i ++s+  q++Ll  l+           e + ++r+++++ k+l +l++ g+f e L+++L  l+l++PpL
       EHU00712.1 305 LDEIGEMSPTMQTKLLRFLNDgtfrrvgeeHEvHVNVRVICATQKNLFELVQRGEFREDLFYRLNVLTLNLPPL 378
                      ****************************9866699**************************************9 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.4e-09   3.6e-06       2      64 ..       2      60 ..       1      63 [. 0.87

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.4e-09
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64
                +l+v+++Dr Gl+ +++ +l  rgi ++ ie++ss++    i+  + + + e+ +++++++++
  EHU00712.1  2 RLEVFCQDRIGLARELLDLLVARGIDLRGIEVASSGR----IYLNFSTLEFEQFSNLMAEIRR 60
                589********************************66....8888888888888888888876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.2e-07   0.00013       2     120 ..     231     347 ..     230     375 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-07
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE...--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvq...ltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerr 93 
                 +l++G++GtgK +la+    +    + +++  +   l++d  e++l+g+   + +   + +++ +  +a +g  ++lDE+ ++++ ++ +Ll+ l++ +
  EHU00712.1 231 LLIIGDTGTGKDMLARACHLRSargKMPFLALNcasLPDDVAESELFGHAAGAyPNALEGKKGFFE-QA-NGGSVLLDEIGEMSPTMQTKLLRFLNDGT 327
                 89*************9655444557555555441116889**********9654444444444443.33.788889*********************** PP

                 EE..-SSSEEE---......-EEEEEE CS
       AAA_5  94 llleeggelvkaknddllerfrviata 120
                 ++     ++v+++       +rvi ++
  EHU00712.1 328 FRRVGEEHEVHVN-------VRVICAT 347
                 **66666666554.......5666554 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.6e-07   0.00027       8      79 ..       2      68 ..       1      68 [. 0.95

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.6e-07
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVe 79
                rlev ++dr gl +++++++ + +++++ +++ +  +    +i ++++    e+ s+++a +r++pgV++V+
  EHU00712.1  2 RLEVFCQDRIGLARELLDLLVARGIDLRGIEVAS--SG---RIYLNFSTLEFEQFSNLMAEIRRTPGVTDVR 68
                89********************************..34...8999999**********************95 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   8.4e-07   0.00089       1     111 [.     231     349 ..     231     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.4e-07
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeer 84 
                 +l++G  GtGK +la+a    +   +++fl +++++l ++               ++ +  +++f++a        +++DEi ++ ++           
  EHU00712.1 231 LLIIGDTGTGKDMLARACHLRSargKMPFLALNCASLPDDvaeselfghaagAYPNALEGKKGFFEQANG----GSVLLDEIGEMSPTM---------- 315
                 5899*************988765667***********977899996666333222222223445555444....5699********999.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnr 111
                  + +Ll++l++ + +        + +v vi+at++
  EHU00712.1 316 -QTKLLRFLNDGTFRrvgeehevHVNVRVICATQK 349
                 .9999999999999899999999777******986 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.7e-06    0.0028       3      57 ..      82     133 ..      80     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-06
       PAS_8   3 lralfesspdgiavvdlgdrivdvNqaalellGysadlkgellg.qllpvlrplle 57 
                 l al+ ++p++++ vdl  ++  +N+aa+ l+     l++ +++ +  ++l  ++ 
  EHU00712.1  82 LSALLVAMPEPVFSVDLRSKVELANPAAQNLFN----LDENKIRnVNADHLINGFN 133
                 5688899*********6667************9....7777776544444444444 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.4e-06    0.0078      11      51 ..     470     511 ..     469     512 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.4e-06
  HTH_Tnp_ISL3  11 riTlrleayilellles.rsvkavArqlgvSwtTVwrildry 51 
                   +iT+r+e+ il++l  s  s +  A++lgvS t + + l++y
    EHU00712.1 470 QITRRFERSILTRLYLSyPSTRKLAKRLGVSHTAIANKLREY 511
                   79*********************************9999876 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.5e-05     0.026       4      39 ..      83     118 ..      80     131 .. 0.90
   2 ?   -1.2   0.0       1.8   1.9e+03      57     102 ..     209     256 ..     187     262 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHH CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsre 39 
                 +a+l ++p+p+f vD + ++ ++N+aa+ l++l+++
  EHU00712.1  83 SALLVAMPEPVFSVDLRSKVELANPAAQNLFNLDEN 118
                 688899**************************9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHTT-ECCCCEEEEC..TTSSEEEEEEEEEEEEETTEE CS
         PAS  57 elaelleqlleqgeesrageisfkl..rdgrpihlevraspvrdagge 102
                  +  +++q+ eq+++  + +  +      g+ + ++ ra+++r+a g+
  EHU00712.1 209 AVTPKMRQVVEQARKLAMHDAPLLIigDTGTGKDMLARACHLRSARGK 256
                 444555555555555555555555567788889999999999998886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.7e-06    0.0091       4      69 ..     199     264 ..     196     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.7e-06
       AAA_7   4 deeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikd.llkkldkekylsltinf 69 
                 ++e++f++i+  t +  ++    ++l  ++ p+l++G+tGtGK ++++   l++    k+ +l +n+
  EHU00712.1 199 TDETEFDHIVAVTPKMRQVVEQARKLAMHDAPLLIIGDTGTGKDMLARAcHLRSAR-GKMPFLALNC 264
                 56789999999999999999999***********************9996666665.6666666665 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00041      0.44       3      60 ..      88     151 ..      86     177 .. 0.81
   2 ?    2.6   0.0      0.15   1.6e+02      37      80 ..     190     242 ..     173     265 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
       PAS_4   3 slpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpee......daarleralrrvl 60 
                 ++p++++ +d  ++v+ aN+aa+ lf ++   +++     l +          +r++++ ++v+
  EHU00712.1  88 AMPEPVFSVDLRSKVELANPAAQNLFNLDENKIRNVNADHLINGFnfgrwlENERVQAQAQHVV 151
                 6899****************************99999988877766666666666666666665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
       PAS_4  37 Gktlaellpee.....daarleralrrvlegeepiefleelll....pgeerh 80 
                 G+ l+ l+ ++     +  ++ + +r+v+e+ + + +++ +ll     g ++ 
  EHU00712.1 190 GRQLQNLVVTDetefdHIVAVTPKMRQVVEQARKLAMHDAPLLiigdTGTGKD 242
                 33333322222234444555555566666665555555555555554444444 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.6e-05     0.091       6     120 ..     231     340 ..     227     361 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.6e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---........----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle........eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVq 96 
                 +l++g tg+Gk +la+a       + + ++  +++ +l          + ++  + + l+g ++g  ++++gG vllDEi   +p             q
  EHU00712.1 231 LLIIGDTGTGKDMLARACHLRSA-RGKMPFLALNCASLPDdvaeselfGHAAGAYPNALEG-KKGFFEQANGGSVLLDEIGEMSP-----------TMQ 316
                 689999*******9999988888.8999999999999888555433333333333333333.34555667788************...........*** PP

                 HHHHHHHH--EE-----.--EE-TT CS
       AAA_2  97 rdLLqileggtltdkqg.rkvdtkn 120
                 + LL+ l +gt +   + ++v+  n
  EHU00712.1 317 TKLLRFLNDGTFRRVGEeHEVHV-N 340
                 **********9984433244443.3 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0035       3.7      24      42 ..     230     248 ..     212     253 .. 0.83
   2 ?    3.5   0.0     0.038        40      98     155 ..     291     346 ..     282     353 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0035
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                    ll++G  G+GK mla++ 
    EHU00712.1 230 PLLIIGDTGTGKDMLARAC 248
                   599*************975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.038
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaa 155
                   k+G    a+ G ++LDE+ e++ ++   L + l+dg+   +r  ++ e   ++ +++a
    EHU00712.1 291 KKGFFEQANGGSVLLDEIGEMSPTMQTKLLRFLNDGTF--RRVGEEHEVHVNVRVICA 346
                   5677789999***************9999999999864..455555555555555555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016      0.17      13      80 ..     190     255 ..     179     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
      DUF815  13 egalepveevdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaee 80 
                  ++l+ +  +de+++d++v +  + +++ve +++++ + +   +L++G+ GtGK  l +a++ + a+ 
  EHU00712.1 190 GRQLQNLVVTDETEFDHIVAVTPKMRQVVEQARKLAMHDA--PLLIIGDTGTGKDMLARACHLRSARG 255
                 4568899999***********************9987664..58****************99877665 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00045      0.47      26      46 ..     490     510 ..     485     513 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
      HTH_10  26 lkeLAkelGIskstlsehLrk 46 
                 +++LAk+lG+s +++ + Lr+
  EHU00712.1 490 TRKLAKRLGVSHTAIANKLRE 510
                 789****************97 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.5   4.8e+03      22      34 ..     109     121 ..     107     122 .. 0.71
   2 ?   10.0   0.1   0.00079      0.83      12      33 ..     483     504 ..     478     508 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.5
      NUMOD1  22 AakyLgishntIn 34 
                 A + ++ ++n I+
  EHU00712.1 109 AQNLFNLDENKIR 121
                 7777888888876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00079
      NUMOD1  12 tigkFsSireAakyLgishntI 33 
                 ++ +++S r++ak Lg+sh  I
  EHU00712.1 483 LYLSYPSTRKLAKRLGVSHTAI 504
                 5789***************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3823.58
//
Query:       EHU00713.1  [L=353]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-53  181.3   1.8    7.8e-53  178.5   0.2    2.1  2  DUF697    Domain of unknown function (DUF697)
     0.0043   16.8   0.3      0.024   14.3   0.1    2.1  2  EcsC      EcsC protein family


Domain annotation for each model (and alignments):
>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.014   1.3e+02      79     125 ..      65     122 ..      56     138 .. 0.62
   2 !  178.5   0.2   8.7e-57   7.8e-53       2     161 ..     184     342 ..     183     343 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.014
      DUF697  79 rsvlknlaglGlvelgtdllkqllsl...........nlatklsaraaQGvvagllTa 125
                 rs+ +n++g+Gl  +g +++ q ++             l + ++++++ ++++g+lT+
  EHU00713.1  65 RSLWRNMVGAGLGLFGISIVAQGVQWshnawlahdwfALGSGMAGGLIVAAGVGALTR 122
                 5566666666666666666555444422233333555555666666666666666665 PP

  == domain 2  score: 178.5 bits;  conditional E-value: 8.7e-57
      DUF697   2 qaaeleelaeqelleqrdqeakkliekyawekAlvvavsPlalvDllavaavnlrlirelaelYgielgyegaqrLarsvlknlaglGlvelgtdllkq 100
                 ++ e  +l+ q+++  +d++a++ i+++a+e+Al++avsPlalvD++++a++n+rl++++a +Ygielgy +++rL+r vl n+a++G++el+ +++++
  EHU00713.1 184 NDGETVRLYVQLVQPVLDRQARREISRHAAESALMIAVSPLALVDMAFIAWRNIRLVNRIAAIYGIELGYYSRLRLFRLVLLNMAFAGASELVREVGMD 282
                 67788999******************************************************************************************* PP

      DUF697 101 llslnlatklsaraaQGvvagllTarvGlsaieylrplaswgdegkpklsevvkellsqlk 161
                 ++s+++a++lsaraaQG++agllTar+ ++a+e++rpl+ w +++kp+l++ ++el+ q+k
  EHU00713.1 283 WMSQDIAARLSARAAQGIGAGLLTARLCIKAMELCRPLP-WLENDKPRLGDYRRELIGQIK 342
                 ***************************************.****************99987 PP

>> EcsC  EcsC protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.072   6.5e+02      99     113 ..      70      84 ..      48      87 .. 0.78
   2 !   14.3   0.1   2.7e-06     0.024     112     163 ..     224     278 ..     156     307 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.072
        EcsC  99 aaeGagtGagGllll 113
                  + Gag+G++G+ ++
  EHU00713.1  70 NMVGAGLGLFGISIV 84 
                 578********9665 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.7e-06
        EcsC 112 lllaDiPlllglklkvlqeiAliYGydlkek.eerlfiLkvlqlasa.dde.erk 163
                 l l+D+ ++   +++++ +iA+iYG +l  + + rlf L +l++a+a  +e +r+
  EHU00713.1 224 LALVDMAFIAWRNIRLVNRIAAIYGIELGYYsRLRLFRLVLLNMAFAgASElVRE 278
                 5789999999******************7662569***********965544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2727.57
//
Query:       EHU00714.1  [L=465]
Description: uncharacterized DUF463 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-186  620.9   0.1   1.5e-186  620.7   0.1    1.0  1  DUF463    YcjX-like family, DUF463
  ------ inclusion threshold ------
      0.072   13.4   0.0        2.5    8.4   0.0    2.8  3  AAA_22    AAA domain
      0.081   12.4   0.0       0.13   11.7   0.0    1.2  1  Pox_A32   Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  620.7   0.1  2.5e-190  1.5e-186       1     444 []      20     464 ..      20     464 .. 0.99

  Alignments for each domain:
  == domain 1  score: 620.7 bits;  conditional E-value: 2.5e-190
      DUF463   1 lrlavTGLsraGKtvfitsLvnqLlaaekkarlplfeaaregrllgaklepqpddsvprFdYeealaaLtaeppeWpesTreiselrLeiryksksglr 99 
                 lrlavTGLsr+GKt+fitsLvnqLl+++++arlplf+++r++rllg+k++pq+d+  +rF+Y+e la+L ++pp+Wp++Tr++se+rL++ry+++++l 
  EHU00714.1  20 LRLAVTGLSRSGKTAFITSLVNQLLSVHSGARLPLFSVVRDERLLGVKRVPQRDMGTARFTYDEGLAQLYGSPPAWPTPTRGVSEMRLALRYRPHDTLL 118
                 7************************************************************************************************** PP

      DUF463 100 rllkeeatltldivDYPGEWLlDLpLleqdyaqwsqevlellkeearaelaaewlaalkeldpsakadeetleelaeaytayLaacreeeglsllqPGR 198
                 r+lke+atl+l+ivDYPGEWLlDLp+l+qdy +ws+++  ll++ +ra +a++w + +++ldp a+a+e+ l+++aea+t+yL++c++e gl+++q GR
  EHU00714.1 119 RHLKETATLYLEIVDYPGEWLLDLPMLAQDYLTWSRQMNGLLQG-DRALWAQPWRDLCQRLDPLAPAEENRLADIAEAWTDYLHRCKAE-GLHFIQSGR 215
                 ******************************************99.999*****************************************.********* PP

      DUF463 199 fllpgdlegaPvLtFfPllaleeaeks.....kkgsllavlerryeaYkkkvvkpffrehFarldrqivLvDvLsalnaGkealedleealaeileafr 292
                 f+lpgd++gaP+L+FfP+++ ++a+++     +kgs++a+l++r+++Y+++vvk f+++hF r+drqivLvD+L++ln+G++a++d++ al++++++f+
  EHU00714.1 216 FVLPGDMAGAPALQFFPWPTADDAQAAklaqaDKGSNFAMLQQRFHYYCQHVVKGFYKNHFVRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFH 314
                 ********************9999988899999****************************************************************** PP

      DUF463 293 ygkssllkrlfspridkvlfaAtkaDhvtaeqhkrLeallrqlveeaveraefegaevevlalaavrateeaeveeegeeleavrgteleekeevalfp 391
                 yg+++l++rlfsp idk+lfaAtkaDh+t++qh ++++ll+qlv++a+++a+feg++++++ la+v+at++++v+++ge+++a+rg++l+++e ++++p
  EHU00714.1 315 YGQRTLFRRLFSPVIDKLLFAATKADHITHDQHGNMVSLLQQLVQDAWQNAAFEGISMDCIGLASVQATQSGQVDHQGEKIPALRGHRLADGEALTVYP 413
                 *************************************************************************************************** PP

      DUF463 392 GelPeklpeaefwkeqkfefvrfrPpkkeegeeealphirlDralefLlgDkL 444
                 Ge+P +lp a+fw++q+f+f++frP+  + + +++lphir+D+alefLlgDkL
  EHU00714.1 414 GEVPPRLPGAAFWQQQGFQFEQFRPQ--QLDIDRPLPHIRMDAALEFLLGDKL 464
                 **************************..58999******************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00041       2.5       8      36 ..      22      50 ..      16     110 .. 0.82
   2 ?    1.1   0.0     0.073   4.3e+02      55      91 ..     169     205 ..     162     212 .. 0.85
   3 ?   -1.4   0.0      0.44   2.6e+03      91     114 ..     273     304 ..     242     325 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00041
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakae 36
                l+vtG s +GKT  +  l++ql  + + +
  EHU00714.1 22 LAVTGLSRSGKTAFITSLVNQLLSVHSGA 50
                79*******************98776555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.073
      AAA_22  55 dllrellralglelkaerlsseellealeqalrarav 91 
                 + +r+l++ l+  + ae++++ ++ ea +++l+++++
  EHU00714.1 169 QPWRDLCQRLDPLAPAEENRLADIAEAWTDYLHRCKA 205
                 5588999999988888999999999*********987 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.44
      AAA_22  91 v.......ielliiDEaqhlr.seealeeLrs 114
                 +       ++++++D  q l+  ++a+++ r 
  EHU00714.1 273 KnhfvrfdRQIVLVDCLQPLNsGPQAFNDMRL 304
                 14445666789999999999754888887754 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.2e-05      0.13      12      39 ..      18      45 ..      12      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
     Pox_A32 12 kpFrlalvGgsGsGktvyLlsLlrtlvk 39
                ++ rla++G s sGkt+++ sL+++l +
  EHU00714.1 18 RHLRLAVTGLSRSGKTAFITSLVNQLLS 45
                678********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3629.29
//
Query:       EHU00715.1  [L=82]
Description: phage shock protein D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-29  101.7   2.8    1.9e-29  101.5   2.8    1.1  1  Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
  ------ inclusion threshold ------
        0.1   12.9   0.0       0.11   12.8   0.0    1.2  1  GtrA             GtrA-like protein


Domain annotation for each model (and alignments):
>> Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   2.8   2.1e-33   1.9e-29       1      61 []      12      72 ..      12      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.1e-33
  Phageshock_PspD  1 kvkpglkiaGklvlltAlrYgPaGvAGWAvksvArrPLkllLAvALEPlLrrvakrvsarf 61
                     ++ p+lk+a +++++ A++YgPaGv GWAvksvArrPL++lL +ALEPlL+rv++rv+ rf
       EHU00715.1 12 RATPALKSAARFIIINAVTYGPAGVTGWAVKSVARRPLRILLGLALEPLLKRVMNRVASRF 72
                     689********************************************************98 PP

>> GtrA  GtrA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05      0.11      47      88 ..       4      44 ..       2      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
        GtrA 47 nrrwtFkdrekakllkqflkFvlvsllglllnllilwllvek 88
                +r  tF++r +   lk +++F+++++++++   +  w++ ++
  EHU00715.1  4 SRAATFRHRATPA-LKSAARFIIINAVTYGPAGVTGWAVKSV 44
                6889******987.**************99877776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 647.40
//
Query:       EHU00716.1  [L=116]
Description: phage shock protein C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-15   55.7   1.6    4.3e-15   55.3   1.6    1.2  1  PspC      PspC domain
      0.005   16.4   0.0     0.0061   16.1   0.0    1.1  1  PSD1      Protein of unknown function (DUF1553)


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   1.6   4.8e-19   4.3e-15       1      51 [.       5      62 ..       5      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 4.8e-19
        PspC  1 krLyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll.......glllYiilwiilP 51
                ++L R+pd+ +l+GVcaGlAey++v ++l+R+i+vl l       ++++Y++l ++l+
  EHU00716.1  5 RKLWRKPDEGKLMGVCAGLAEYLDVPVRLLRIIVVLSLffglfvfTVIAYFVLGFVLD 62
                69*******************************7666689777777788****99986 PP

>> PSD1  Protein of unknown function (DUF1553)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.8e-07    0.0061      43      87 ..      70     113 ..      53     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.8e-07
        PSD1  43 sqgepPshpeLLDwLaaefvesgwslKeLirlIvlSatYrqsska 87 
                 + +++P+  eLLD L++ + +++ +++ + r+ v+S+t+  +s+ 
  EHU00716.1  70 NGEAQPTASELLDQLETALQQDERNVRDIERY-VTSETFSVRSRF 113
                 34689************************998.79****988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 885.45
//
Query:       EHU00717.1  [L=75]
Description: phage shock protein B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-32  111.5   0.3    1.6e-32  111.3   0.3    1.0  1  PspB      Phage shock protein B
    0.00032   21.0   0.3    0.00037   20.8   0.3    1.1  1  BatA      Aerotolerance regulator N-terminal
  ------ inclusion threshold ------
      0.036   14.3   0.0      0.041   14.2   0.0    1.1  1  KxDL      Uncharacterized conserved protein
      0.038   13.1   0.1      0.043   12.9   0.1    1.0  1  AIP3      Actin interacting protein 3
      0.046   13.7   0.0      0.074   13.1   0.0    1.4  1  Ac76      Orf76 (Ac76)


Domain annotation for each model (and alignments):
>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.3   4.6e-36   1.6e-32       2      73 .]       3      74 ..       2      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 4.6e-36
        PspB  2 evflavpliifvlfVapiWLiLHYrskkkrskglsaedekrLeellekAekleeRietLEriLdaespnwRn 73
                + fla+pl+ifvlfVap+WL+LHY++k++   +ls+++++rL++++++A++++eRi++LE+iLdae+pnwR+
  EHU00717.1  3 ALFLAIPLTIFVLFVAPVWLWLHYSNKRSGGAELSQSQMQRLQQVTRDAQRMRERIDALEAILDAEHPNWRQ 74
                579********************************************************************7 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3     1e-07   0.00037       5      54 ..       7      58 ..       1      65 [. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1e-07
        BatA  5 lnPllLlallllplpiillyllkrrpqev.vfsslrlleevekdeea.lqrl 54
                + Pl+ ++l+++p+ ++l+y +kr      + s ++ l++v++d ++ ++r+
  EHU00717.1  7 AIPLTIFVLFVAPVWLWLHYSNKRSGGAElSQSQMQRLQQVTRDAQRmRERI 58
                5699*********************99888**************99954444 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.041      51      84 ..      38      71 ..      27      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
        KxDL 51 kqgtkllkevkkdLesifkkirslkaklakkyPe 84
                +++++ l++v +d + ++++i++l+a l +++P+
  EHU00717.1 38 QSQMQRLQQVTRDAQRMRERIDALEAILDAEHPN 71
                67899****************************6 PP

>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.2e-05     0.043     229     263 ..      40      74 ..      35      75 .] 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
                 XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        AIP3 229 skkqlesvakeikkakkelkkleeyiktekpvWkk 263
                 + + l++v+++ +++++++++le  ++ e+p+W++
  EHU00717.1  40 QMQRLQQVTRDAQRMRERIDALEAILDAEHPNWRQ 74 
                 6789*****************************96 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.1e-05     0.074      28      65 ..      10      46 ..       1      68 [. 0.62

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
        Ac76 28 ltllllfvlFiillnvyyikteStpadlytekakkikK 65
                lt+++lfv  +  l ++y ++ S  a+l +++++++++
  EHU00717.1 10 LTIFVLFVAPV-WLWLHYSNKRSGGAELSQSQMQRLQQ 46
                44444444444.4899************9999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                     1009  (0.0562775); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 638.24
//
Query:       EHU00718.1  [L=221]
Description: phage shock protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-48  164.8  28.9    2.4e-48  164.6  28.9    1.0  1  PspA_IM30      PspA/IM30 family
  ------ inclusion threshold ------
      0.022   13.8   0.5      0.031   13.4   0.5    1.3  1  Filo_VP35      Filoviridae VP35
       0.18   11.1  11.5       0.18   11.0  10.9    1.3  1  MPS2           Monopolar spindle protein 2
       0.36    9.7  24.1       0.28   10.0  21.4    2.0  1  Spc7           Spc7 kinetochore protein
       0.45   10.6  15.5      0.093   12.8   2.3    3.6  3  DUF1664        Protein of unknown function (DUF1664)
       0.82    9.3  21.3        3.4    7.3   9.4    3.0  2  SHE3           SWI5-dependent HO expression protein 3
       0.91    9.5   8.5       0.16   12.0   1.2    2.3  2  DUF489         Protein of unknown function (DUF489)
        1.9    7.8  16.0       0.52    9.6  12.0    2.0  2  FAM76          FAM76 protein
        2.4    8.4  17.3       0.12   12.7   9.5    2.4  2  DUF5082        Domain of unknown function (DUF5082)
        2.5    8.4  27.8       0.82   10.0   6.1    4.3  3  ABC_tran_CTD   ABC transporter C-terminal domain
        4.5    7.3   7.8        1.6    8.7   1.1    2.7  3  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
        5.6    7.4  10.3        6.2    7.3   0.6    4.3  5  FlaC_arch      Flagella accessory protein C (FlaC)
        7.1    6.2  14.4      0.065   12.8   3.4    2.7  3  Fzo_mitofusin  fzo-like conserved region
        7.7    6.2  31.0         15    5.3  31.0    1.6  1  ERM            Ezrin/radixin/moesin family
          8    7.0  25.6       0.12   12.9   6.3    3.5  3  ZapB           Cell division protein ZapB
        8.3    7.1  16.8        0.5   11.0   2.6    3.1  3  YabA           Initiation control protein YabA
        8.4    4.2   9.6        2.1    6.2   5.4    1.6  1  Prominin       Prominin
        9.9    4.6  15.2        3.7    6.1  10.8    2.0  2  FapA           Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6  28.9   2.5e-51   2.4e-48       1     218 [.       2     216 ..       2     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 2.5e-51
   PspA_IM30   1 gifkrllrllraniselldkaeDPekileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkgeeeLArealaeikslekq 99 
                 gif+r++++++ani++ll+ aeDP+k+++  i++m+++l+++r ++a+++a++kql r++e+++ q +++++kA++A +k +e+LAr al e+++l++ 
  EHU00718.1   2 GIFSRFADIVNANINSLLERAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLSRRIEQAELQQAEWQEKAELAIRKDKEDLARSALIEKQKLTDL 100
                 79************************************************************************************************* PP

   PspA_IM30 100 aealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgklstesatdslerieeKieerearadaaaelaesaqdldakl 198
                 ++ l+ +++q+ ++   +++++++le+k++e++a +++l +r +aa+  ++v ++l++ +  +a++ +e +e++i+ +ea+a+ ++  +   ++ld+++
  EHU00718.1 101 IASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLRHQAASSSRDVRRQLDSGKIDEAMARFESFERRIDHMEAEAESHGFGK--PKTLDQQF 197
                 **********************************************************************************9887655..99****** PP

   PspA_IM30 199 eaagiqkevseqvlarlkae 218
                  ++++++e+ +q l++lka+
  EHU00718.1 198 TELKADDEI-SQQLNALKAK 216
                 *********.9******994 PP

>> Filo_VP35  Filoviridae VP35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   3.1e-05     0.031      59     108 ..      84     133 ..      48     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
                 XTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
   Filo_VP35  59 ddiifeelvvkrtladllivvnrqiidiestlseletrvtelerqlheik 108
                 +d+    l+ k+ l+dl+  ++r++ +++ tl+ ++  + ele++l e +
  EHU00718.1  84 EDLARSALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETR 133
                 566677899*************************************8865 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  10.9   0.00018      0.18      81     222 ..       9     158 ..       4     181 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
        MPS2  81 kLvgksfkevvekifed...........vDgi.eaekisslelkeevkrlvvlssknsekdslstprkkilldllkkqesPeklrrsnrklkaLevrve 167
                 ++v+ ++++++e++               D++ e   +s+ +l e+     ++ s++ e+++l  +  ++ ++l  ++++    r+ +   ++L   ++
  EHU00718.1   9 DIVNANINSLLERAEDPqklvrlmiqemEDTLvEVRSTSARALAEK-----KQLSRRIEQAELQQAEWQEKAELAIRKDKEDLARSALIEKQKLTDLIA 102
                 5566666655555433355655552222233212334444444444.....4578888888888888887777776666666667777788899999** PP

        MPS2 168 slkdELeakdevlrekeRelleLkkrlseykekYellqrefs.lykarrveksqns 222
                 slk+E+e+ de+l+    e+ eL+k+lse + + + l  +++     r v+ + +s
  EHU00718.1 103 SLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLRHQaASSSRDVRRQLDS 158
                 *************************************9999966677777777777 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  21.4   0.00028      0.28     138     283 ..      30     176 ..      26     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00028
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek 235
                   + +++e++l ++++ +++  +++++l++  ++ e ++ae +e++e   +  +e+l+ +   e ++l + +a+lk e+e+  + l++++ +++ele+k
  EHU00718.1  30 RLMIQEMEDTLVEVRSTSARALAEKKQLSRRIEQAELQQAEWQEKAELAIRkDKEDLARSALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKK 128
                 55567778888888877777777788888888888999999999888754427777888888888899999**************************** PP

        Spc7 236 ieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltg 283
                 ++e++++ + l  + ++a + ++ +++ ++  +++ +++++++e+  +
  EHU00718.1 129 LSETRARQQALTLRHQAASSSRDVRRQLDSGKIDEAMARFESFERRID 176
                 *******************************************99766 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.7     0.071        71      53      83 ..      46      76 ..      30      92 .. 0.72
   2 ?   12.8   2.3   9.4e-05     0.093      56     106 ..      89     139 ..      77     148 .. 0.84
   3 ?    1.4   0.2       0.3     3e+02      63      95 ..     170     203 ..     141     221 .] 0.50

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.071
     DUF1664 53 vseslaatkrhLssridrvdkkldeqkeisk 83
                 s+   a k++Ls+ri++ + ++ e +e ++
  EHU00718.1 46 TSARALAEKKQLSRRIEQAELQQAEWQEKAE 76
                45566678999*****999988877766544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.4e-05
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                 s    k++L++ i+++ ++++++ e+ + +k e++e++++lse++   +++
  EHU00718.1  89 SALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQAL 139
                 55567999*********************************9998876665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.3
     DUF1664  63 hLssridrvdkkldeqke.iskeikeevtevred 95 
                  +++rid+++++ ++      k ++++ te++ d
  EHU00718.1 170 SFERRIDHMEAEAESHGFgKPKTLDQQFTELKAD 203
                 4555666666555544320223334444444443 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.4     0.011        11      54     111 ..      12      76 ..       9      82 .. 0.79
   2 ?    7.3   9.4    0.0034       3.4      39      98 ..      93     152 ..      80     221 .] 0.74

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHH..H...H..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH CS
        SHE3  54 NdnLsslLkRKe..r...r..lkdlekelselkesveelklekkqlkkrlenssaseteleeele 111
                 N n++slL+R e  +   r  ++++e+ l e ++    + +ekkql+ r+e+ + +++e +e+ e
  EHU00718.1  12 NANINSLLERAEdpQklvRlmIQEMEDTLVEVRSTSARALAEKKQLSRRIEQAELQQAEWQEKAE 76 
                 78999999997644222223379****************************98877777766654 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  39 keskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlen 98 
                  ++k+ + +aslk E ++    L R +  + +lek+lse + + + l+l++++ +   + 
  EHU00718.1  93 EKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLRHQAASSSRDV 152
                 4679999***************************************99999877655443 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.9      0.28   2.8e+02      63     116 ..      19      72 ..       3      88 .. 0.67
   2 ?   12.0   1.2   0.00016      0.16      59     121 ..      97     160 ..      88     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.28
                 HHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS- CS
      DUF489  63 leqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehfd 116
                 le  e+ +k  ++ +  +  +l+++ +  ++  + +++l++rieq+e q+++ +
  EHU00718.1  19 LERAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLSRRIEQAELQQAEWQ 72 
                 444444444444455555556777777777777788899999999998877654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00016
                 HHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS.-TTSHH CS
      DUF489  59 letlleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehf.dllhen 121
                 l+ l+++l++e ++ d +ltr+  ++ +le+kLs++++  ++l+ r +++++ ++   +l + +
  EHU00718.1  97 LTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLRHQAASSSRDVRrQLDSGK 160
                 67789999999999999*****************************999999887553555544 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  12.0   0.00052      0.52     178     267 ..      53     140 ..      14     169 .. 0.65
   2 ?   -0.0   0.3      0.46   4.6e+02     244     268 ..     192     218 ..     143     221 .] 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00052
       FAM76 178 khkkrssrlevskleeeklaeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelrekl 267
                 ++k+ s r+e ++l++ +  +ek++   +k++ d+     l++ ++L + iaslk+++eq d++l   + +i+el  +l e++++ +   
  EHU00718.1  53 EKKQLSRRIEQAELQQAEW-QEKAELAIRKDKEDL-ARSALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALT 140
                 2223333444555553332.222222223334444.45689999*******************************999988776655433 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.46
       FAM76 244 ekdkkitelkaelleke..kelreklk 268
                 + d++ telka+ + ++  + l+ k++
  EHU00718.1 192 TLDQQFTELKADDEISQqlNALKAKMN 218
                 467888888887654440134444444 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   9.5   0.00012      0.12      29     121 ..      40     132 ..      12     134 .. 0.86
   2 ?   -0.0   0.3         1   9.9e+02      19      46 ..     190     216 ..     172     221 .] 0.58

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
     DUF5082  29 LkeaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLenqiseaqgvldtlqsqlnsl 121
                 L e++++   + ++ kq  + +e+ ++++++W+ k+e     + ++l  s    ++kl +li+++++E+e+  ++++ ++g ++ l+++l+++
  EHU00718.1  40 LVEVRSTSARALAEKKQLSRRIEQAELQQAEWQEKAELAIRKDKEDLARSALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSET 132
                 668888888888899999999*******************************************************************99986 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1
     DUF5082  19 iaaleekIerLkeaktklsdekeslkqk 46 
                  ++l+++ ++Lk a +++s++ ++lk+k
  EHU00718.1 190 PKTLDQQFTELK-ADDEISQQLNALKAK 216
                 567788888887.344444444444443 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   7.5       0.2     2e+02       9      40 ..      53      83 ..      33     104 .. 0.79
   2 ?   10.0   6.1   0.00082      0.82       6      52 ..     104     145 ..      99     181 .. 0.82
   3 ?    3.9   1.5     0.065        65       9      36 ..     167     187 ..     159     221 .] 0.47

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.2
  ABC_tran_CTD  9 eleeleaeIeaLEeeiaeleaeladpelysdp 40
                  e ++l ++Ie+ E ++ae +++ + + + +d 
    EHU00718.1 53 EKKQLSRRIEQAELQQAEWQEKAELA-IRKDK 83
                  6679****************987654.44444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00082
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaelee 52 
                    +re e++++++ ++  eiaele++l++       ++ ++l+ + ++
    EHU00718.1 104 LKREVEQVDETLTRMKGEIAELEKKLSETR-----ARQQALTLRHQA 145
                   69*************************876.....455555555444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.065
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpel 36 
                   ++e  e++I+ +E+e        ++ ++
    EHU00718.1 167 RFESFERRIDHMEAE-------AESHGF 187
                   344455555555555.......444443 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1         2     2e+03      50      50 ..      32      32 ..       6      70 .. 0.48
   2 ?    8.7   1.1    0.0016       1.6      28      88 ..      96     157 ..      84     166 .. 0.76
   3 ?    2.0   0.5       0.2     2e+02      70      95 ..     191     218 ..     135     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2
  Baculo_PEP_C 50 l 50
                  +
    EHU00718.1 32 M 32
                  2 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0016
  Baculo_PEP_C  28 qnvqilaqlatlldaietqLnalsedlksllaeldt.rldtlltnLtdalnalqdtlrneLt 88 
                   +++ ++a l++ +++++++L+ ++ ++ +l ++l++ r  +++ +L ++ ++ + ++r +L+
    EHU00718.1  96 KLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSEtRARQQALTLRHQAASSSRDVRRQLD 157
                   45677788888999999999998888888888876546667777777777777777777776 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.2
  Baculo_PEP_C  70 tnLtdalnalq..dtlrneLtnlnsilt 95 
                   ++L+++  +l+  d+++++L++l+++++
    EHU00718.1 191 KTLDQQFTELKadDEISQQLNALKAKMN 218
                   5566666666666677777776666554 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.4       0.3     3e+02       2      31 ..      33      62 ..      13      69 .. 0.68
   2 ?    7.3   0.6    0.0062       6.2      13      40 ..      98     125 ..      92     129 .. 0.81
   3 ?    1.4   0.1      0.42   4.2e+02       2      22 ..     122     144 ..     121     154 .. 0.66
   4 ?   -0.5   0.0       1.7   1.7e+03       6      24 ..     165     183 ..     160     186 .. 0.55
   5 ?    0.9   0.1      0.62   6.1e+02       1      28 [.     174     202 ..     167     219 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.3
   FlaC_arch  2 idelEnklsklsteletvkkeneelsksve 31
                i+e+E  l ++ ++ + + +e ++ls  +e
  EHU00718.1 33 IQEMEDTLVEVRSTSARALAEKKQLSRRIE 62
                556666666666666666666666666666 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0062
   FlaC_arch  13 steletvkkeneelsksveelkenVkdl 40 
                    ++++k+e e++ ++++++k ++ +l
  EHU00718.1  98 TDLIASLKREVEQVDETLTRMKGEIAEL 125
                 5568999999999999999999888665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.42
   FlaC_arch   2 idelEnklsklst..eletvkke 22 
                 i elE+kls++    +  t++ +
  EHU00718.1 122 IAELEKKLSETRArqQALTLRHQ 144
                 67999999988764455555555 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.7
   FlaC_arch   6 Enklsklsteletvkkene 24 
                   ++++++ +++ +++e e
  EHU00718.1 165 MARFESFERRIDHMEAEAE 183
                 4455555556666666654 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.62
   FlaC_arch   1 ridelEnklsklst.eletvkkeneelsk 28 
                 rid +E + +++   + +t+ +++ el+ 
  EHU00718.1 174 RIDHMEAEAESHGFgKPKTLDQQFTELKA 202
                 56666666665555544444444444443 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.0      0.74   7.4e+02      97     134 ..      34      67 ..      21      87 .. 0.58
   2 ?   12.8   3.4   6.5e-05     0.065      88     148 ..      89     148 ..      85     158 .. 0.78
   3 ?   -0.7   0.1       0.9     9e+02     125     127 ..     197     199 ..     155     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.74
  Fzo_mitofusin  97 qelsstfarlcqqvdetekeleeeikelekeiekleev 134
                    qe++ t+     +v+ t++   +e k+l+++ie+ e  
     EHU00718.1  34 QEMEDTLV----EVRSTSARALAEKKQLSRRIEQAELQ 67 
                    44444433....44444444445555555555554433 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.5e-05
  Fzo_mitofusin  88 sancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkasll 148
                    sa +++q   +l   ++r  +qvdet + ++ ei+elek++++  +  ++a +lr++a + 
     EHU00718.1  89 SALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRA-RQQALTLRHQAASS 148
                    556667777777777777888899999999***********99765.56778999999765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.9
  Fzo_mitofusin 125 eke 127
                     +e
     EHU00718.1 197 FTE 199
                    222 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  31.0     0.015        15      22     198 ..      27     217 ..      12     220 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
         ERM  22 ekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaek.eeeekeklerkl....reaeleaarleeeserkeeeaerLkeeleea 115
                 +  +   +e e+t  +    + ra  e+++L+++ ++ae + ++ +e+ae    + ke+l+r +    ++ + ++a l++e+e+ +e  +r+k e+ e 
  EHU00718.1  27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLSRRIEQAELQQAEWQEKAELaIRKDKEDLARSAliekQKLTDLIASLKREVEQVDETLTRMKGEIAEL 125
                 444445566666666666666666666666666666666555555555543134455555553311113444455556666666666666666666666 PP

         ERM 116 reaeeeakekllealstpskseseenveeseteeeeensee............esaeletdeveklsleieeeRvtylekskrlqeqLkeLksel 198
                 ++++ e++++ ++++ + +  +s+  v+++ +  + ++                +ae e+++    ++++  +  t+l+   ++ +qL++Lk+ +
  EHU00718.1 126 EKKLSETRARQQALTLRHQAASSSRDVRRQLDSGKIDEA-MarfesferridhMEAEAESHGF--GKPKTLDQQFTELKADDEISQQLNALKAKM 217
                 666655555544444444222221122222211111111.12222222222112233333333..345555559999999999999999999865 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   5.7      0.39   3.9e+02      28      61 ..      41      74 ..      26      81 .. 0.74
   2 ?   12.9   6.3   0.00012      0.12      14      61 ..      95     142 ..      93     145 .. 0.94
   3 ?    1.7   0.3      0.36   3.6e+02      13      52 ..     161     214 ..     154     220 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.39
        ZapB 28 eeLkeeneelkeenreleeeneqlkeereawqer 61
                 e++  ++    e+++l++ +eq + ++++wqe+
  EHU00718.1 41 VEVRSTSARALAEKKQLSRRIEQAELQQAEWQEK 74
                5555566556667999999999999999999997 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
        ZapB  14 qkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqer 61 
                 qk+ d i++L+ e+e++ e    +k e++ele+++++ ++ ++a++ r
  EHU00718.1  95 QKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLR 142
                 7999***************************************98755 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.36
        ZapB  13 iqkaidtitlLqmeieeLkeen........eelkeenrele......eeneqlk 52 
                 i++a  + ++   +i+ +++e         ++l ++  el+      +++++lk
  EHU00718.1 161 IDEAMARFESFERRIDHMEAEAeshgfgkpKTLDQQFTELKaddeisQQLNALK 214
                 555555555555555555555543444444445555555554432223333333 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.8      0.15   1.5e+02      22      63 ..      31      76 ..      11      89 .. 0.52
   2 ?   11.0   2.6    0.0005       0.5       2      56 ..      93     147 ..      92     168 .. 0.73
   3 ?   -0.8   0.0       2.5   2.5e+03      18      31 ..     204     217 ..     186     220 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....XXXXXXXXXXX CS
        YabA 22 eeleelkeelaelleenaeLeleneklrerl....eeeekkekekk 63
                  ++e++++l+e+    a+  +e+++l +r+     ++ + +++ +
  EHU00718.1 31 LMIQEMEDTLVEVRSTSARALAEKKQLSRRIeqaeLQQAEWQEKAE 76
                3456666666666666666666666666666322211222223333 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0005
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXX CS
        YabA   2 dkkelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeee 56 
                 +k++l+d +++l++++e++ e+l+++k e+ael ++ +e ++ ++ l  r + ++
  EHU00718.1  93 EKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLRHQAAS 147
                 7899999999999999999999999999999999999888888887765553222 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHH CS
        YabA  18 eelleeleelkeel 31 
                 +e++++l++lk+++
  EHU00718.1 204 DEISQQLNALKAKM 217
                 45566666666665 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.4    0.0021       2.1     229     363 ..      82     212 ..      63     221 .] 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0021
    Prominin 229 tlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcldqlpnvdevleal 327
                   e+   +aL e ++l + + + k++ eqv++++++++ + ++L++ l++ + + + +      +++  +++++l+  k+d    +   ++ ++ ++++
  EHU00718.1  82 DKEDLARSALIEKQKLTDLIASLKREVEQVDETLTRMKGEIAELEKKLSETRARQQALTLRHQAASSSRDVRRQLDSGKIDEA--MARFESFERRIDHM 178
                 44555567899999*************************************99865544442222555556555555333332..34456777777777 PP

    Prominin 328 eevletnlssivkeglarlneipekvknqtaevvpd 363
                 e   e+    ++k   +++ e++    +++++ ++ 
  EHU00718.1 179 EAEAESHGFGKPKTLDQQFTELKA--DDEISQQLNA 212
                 777777777888888888887753..3333333333 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.8    0.0037       3.7     324     415 ..      39     122 ..      33     161 .. 0.74
   2 ?    0.4   0.3      0.19   1.8e+02     346     402 ..     161     218 ..     129     221 .] 0.58

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
        FapA 324 teiev.gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea 415
                 t +ev + +  +l ek k+l +++e+ e ++ + ++k ++           ++k++   ++l +k+kl++ +++l++e ++++e l ++k+e+
  EHU00718.1  39 TLVEVrSTSARALAEK-KQLSRRIEQAELQQAEWQEKAELAIR--------KDKEDLARSALIEKQKLTDLIASLKREVEQVDETLTRMKGEI 122
                 6677766675555555.88888888887777777777444443........456788899999999999999999999999999999984333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
        FapA 346 leeleeeleklkkkikklpklka.ekqlesekkeqlkklletkeklkeeleeleeelk 402
                 + e  ++ e  +++i++++++++  +  +++ ++q+   l++  +++++l++l+++++
  EHU00718.1 161 IDEAMARFESFERRIDHMEAEAEsHGFGKPKTLDQQFTELKADDEISQQLNALKAKMN 218
                 3333666667777777777766644444555555555666666777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2103  (0.117296); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.49
# Mc/sec: 1351.76
//
Query:       EHU00719.1  [L=335]
Description: Psp operon transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-60  201.8   0.0    8.5e-60  201.3   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
    7.7e-21   74.7   0.0    2.4e-20   73.1   0.0    1.8  1  Sigma54_activ_2  Sigma-54 interaction domain
      4e-07   30.1   0.0    6.7e-07   29.4   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
    2.1e-06   27.3   0.0      0.002   17.5   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.9e-05   23.3   0.2    0.00014   21.6   0.2    2.0  1  HTH_8            Bacterial regulatory protein, Fis family
     0.0018   18.4   0.0      0.003   17.7   0.0    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0067   16.9   0.0      0.017   15.6   0.0    1.7  1  AAA              ATPase family associated with various cellul
      0.007   16.8   0.6      0.016   15.6   0.1    1.9  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.026   14.0   0.0      0.046   13.2   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
       0.14   12.0   0.1       0.41   10.5   0.1    1.8  1  HTH_23           Homeodomain-like domain
       0.17   11.2   0.0       0.78    9.0   0.0    2.0  3  ATPase           KaiC


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.0   5.2e-63   8.5e-60       1     163 [.       6     168 ..       6     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 5.2e-63
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      l+ges+++ e+leq++k+a+ + +vl++Ge GtGKel+a+ +h  s+r ++ fv++ncaa++e+ll+seLFGhe+GaFtGA+k++ G+fe+adg
       EHU00719.1   6 LLGESNNFLEVLEQVSKLAPLEKPVLVVGERGTGKELIASRLHYLSDRWQGLFVSLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADG 99 
                      578999**************************************************************************************** PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHT CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrln 163
                      GtlfLDe+++ p+ +QekLlrv++ g++ervG+++  +v+vr+i+atnedl +  e+gkfr+dL+ rl+
       EHU00719.1 100 GTLFLDELATAPMLVQEKLLRVIEYGQLERVGGNHVFQVNVRLICATNEDLPALAEAGKFRADLLDRLA 168
                      *******************************************************************96 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.5e-23   2.4e-20       1     138 []       7     177 ..       7     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.5e-23
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakgg 71 
                      lg+s++  e  e++ ++a  + pv+++Ge G+gkel+A  Lh  s +w+ +fv  ++a+l+                       l  +e+a+gg
       EHU00719.1   7 LGESNNFLEVLEQVSKLAPLEKPVLVVGERGTGKELIASRLHYLSDRWQGLFVSLNCAALNenlldselfgheagaftgaqkrhLGRFERADGG 100
                      79999999**************************************************988667777777777777777776666667779*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      tL+l ++a  +   q +Ll +++             + ++rl++++ +dl++l+eag+f + Ll +L   ++++PpL
       EHU00719.1 101 TLFLDELATAPMLVQEKLLRVIEYgqlervggnhVFQVNVRLICATNEDLPALAEAGKFRADLLDRLAFDVVQLPPL 177
                      ***********************99******9763389**************************************8 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.1e-10   6.7e-07       1     122 [.      29     148 ..      29     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.1e-10
                 EEEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--..........--------.G-SEEEEESGGG--HHHHHHHHHHHHS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar.egeilvlDEveraesevlnsLlsllee 91 
                 +vl+vG+ GtgK  +a rl  +         +++  +l++++  ++l+g+   +  g ++++ + +    r  g +l+lDE+ +a+  v+++Ll+++e 
  EHU00719.1  29 PVLVVGERGTGKELIASRLHYLSdrwqglFVSLNCAALNENLLDSELFGHEAGAfTGAQKRHLGRFE---RaDGGTLFLDELATAPMLVQEKLLRVIEY 124
                 599*******************994433334445555555666666666555334444444444444...369************************** PP

                 SEEE..-SSSEEE---......-EEEEEESS CS
       AAA_5  92 rrllleeggelvkaknddllerfrviatanp 122
                  +l    g+++ +++       +r+i ++n+
  EHU00719.1 125 GQLERVGGNHVFQVN-------VRLICATNE 148
                 ****88888888886.......788887776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0016       2.6      25      45 ..      30      50 ..      24      56 .. 0.90
   2 !   17.5   0.0   1.2e-06     0.002      93     158 ..      85     148 ..      77     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0016
  Mg_chelatase 25 lllvGppGsGKtmlakrlpsl 45
                  +l+vG  G+GK ++a+rl+ l
    EHU00719.1 30 VLVVGERGTGKELIASRLHYL 50
                  799***************976 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.2e-06
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                   g +k + G   +a  G LfLDEl+     v e L + +e g+  ++r   +  f  ++ l++a+N 
    EHU00719.1  85 GAQKRHLGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGQ--LERVGGNHVFQVNVRLICATNE 148
                   5667788999*******************************7..58******************95 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   8.3e-08   0.00014       5      42 .]     289     326 ..     287     326 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.3e-08
                 HHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   5 vEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                  E+++ e  L+++++n+ +AA lLG++  +L+  +kk+
  EHU00719.1 289 QERDVVEISLQQAKYNQRRAASLLGVTYHQLRAIMKKH 326
                 699999**************************988885 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.8e-06     0.003       6     132 ..      30     151 ..      27     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.8e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTT...T-HHHHTTSEEEEETGGG-------------HHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligapp...gyvgaeegGivllDEidKihpkessgadvSregVqr 97 
                 +l++g+ g+Gk+++a  l  l + + +  ++ +++ +l e    +e   h    ++ga++   g  ++++gG ++lDE+  +              Vq+
  EHU00719.1  30 VLVVGERGTGKELIASRLHYLSD-RWQGLFVSLNCAALNEnlldSELFGHEAGAFTGAQKrhlGRFERADGGTLFLDELATAPM-----------LVQE 116
                 57899999999999999999999.889999999999999987777777777777777776222566778899**********99...........**** PP

                 HHHHHHH--EE-------EE-TT-EEEEEE--TTH CS
       AAA_2  98 dLLqileggtltdkqgrkvdtknilfImtgafgss 132
                  LL+++e g+l+   g++v   n+ +I++++ +  
  EHU00719.1 117 KLLRVIEYGQLERVGGNHVFQVNVRLICATNEDLP 151
                 ******************************97655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     1e-05     0.017       1     112 [.      30     150 ..      30     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeee 83 
                 vl++G  GtGK l+a+ +   +   +  f++++++ l ++             + g ++k+  + f++a        lf+DE+                
  EHU00719.1  30 VLVVGERGTGKELIASRLHYLSdrwQGLFVSLNCAALNENlldselfgheagaFTG-AQKRHLGRFERAD----GGTLFLDELATAPML---------- 113
                 799************99877752225779999999999767888866655552222.2333334444443....478*****9877444.......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS.G CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr.p 112
                  v+++Ll++++  + +        + +v +i+atn+  
  EHU00719.1 114 -VQEKLLRVIEYGQLErvggnhvfQVNVRLICATNEdL 150
                 .5999***9999999999999999888********854 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1     1e-05     0.016      13      82 ..      14      71 ..       9     192 .. 0.67
   2 ?   -1.4   0.1       1.7   2.7e+03      72      99 ..     249     287 ..     224     332 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
      AAA_16 13 lsalervrsgrp..elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareell 82
                l++le+v++  p    vl++Ge+G+GK  ++ +l+ +l+++  g+f++ +c  l ++              ll
  EHU00719.1 14 LEVLEQVSKLAPleKPVLVVGERGTGKELIASRLH-YLSDRwQGLFVSLNCAALNEN--------------LL 71
                5677888888888899*******************.777774799999999888333..............22 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
      AAA_16  72 laqalareellrqllde...........aesaeleawre 99 
                 +++ +ar++  ++ +++           +   +l++w+ 
  EHU00719.1 249 IINPFARRSEAADRAAPlpatesptalpSLPLDLRQWQN 287
                 444444444444444442222222222222222222332 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.8e-05     0.046      27      70 ..      21      62 ..      12      77 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkldkekylsltinfs 70
                ++l   +kpvl+vG+ GtGK +i+++l   l+ ++++ l+++++
  EHU00719.1 21 SKLAPLEKPVLVVGERGTGKELIASRLHY-LS-DRWQGLFVSLN 62
                5677789*************999988554.33.45555555554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00025      0.41      16      40 ..     300     325 ..     294     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
      HTH_23  16 e.GlsvreIAreLgvsrrTvyrwlkr 40 
                 + ++++r++A +Lgv++++++ + k+
  EHU00719.1 300 QaKYNQRRAASLLGVTYHQLRAIMKK 325
                 46899****************99987 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00048      0.78      17      59 ..      25      64 ..      16      87 .. 0.81
   2 ?   -3.2   0.0       2.6   4.3e+03     101     128 ..     221     248 ..     210     259 .. 0.78
   3 ?   -1.7   0.0      0.91   1.5e+03      71     118 ..     279     326 ..     273     330 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00048
      ATPase 17 pegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveep 59
                p ++ vl++Ge GtGK ++a +  + +  +   +g+fv+++  
  EHU00719.1 25 PLEKPVLVVGERGTGKELIASRLHYLS-DR--WQGLFVSLNCA 64
                567889**************9988888.33..68899988765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.6
      ATPase 101 kedleelieelaeaikeikakrvviDsi 128
                   +++el++ +++ + + + + + +D i
  EHU00719.1 221 PGNVRELKNVVERSVYRHNTSDTALDEI 248
                 5688888999988888888888888877 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.91
      ATPase  71 Gwdlekleeegklaiidasesaeesaeekdkedleelieelaeaikei 118
                   dl++++++++  ++++s +++++++++  + l    ++l+ ++k+ 
  EHU00719.1 279 PLDLRQWQNQQERDVVEISLQQAKYNQRRAASLLGVTYHQLRAIMKKH 326
                 567788888888888888888777666566655666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2435.59
//
Query:       EHU00720.1  [L=542]
Description: periplasmic-binding component of an ABC superfamily predicted antimicrobial peptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-89  298.8   0.1    6.4e-89  298.5   0.1    1.1  1  SBP_bac_5     Bacterial extracellular solute-binding proteins
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.27   11.6   0.0    1.5  1  Ribosomal_L5  Ribosomal protein L5
       0.21   11.3   0.6       0.47   10.2   0.1    1.8  2  HTH_ABP1_N    Fission yeast centromere protein N-terminal dom


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5   0.1   1.1e-92   6.4e-89       2     375 ..      77     455 ..      76     457 .. 0.93

  Alignments for each domain:
  == domain 1  score: 298.5 bits;  conditional E-value: 1.1e-92
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSS......B-SHHHHHHHHHHHHTGGGHCTTHHHHHC........TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGt......pltAeDvvfsferlldpdtasgyasllee........dqdikkveavddytvrftlkkpn 86 
                 ++ +LA+s wev d+g ty+f+LR+gv+F+  +       ++A+Dvvfsf r+ d ++++   +  ++         + +++v+++d+ytv+++l++p+
  EHU00720.1  77 LQADLADS-WEVRDNGATYRFHLRHGVQFQHTSnftptrTMNADDVVFSFARMFDRKHPWHDVNGGYYpyfdslqfADAVQSVKKIDNYTVEIRLNSPD 174
                 5789****.7**********************9899999*******************999999888899999************************** PP

                 TTTTTHCHHHHHHHGC....CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEEST CS
   SBP_bac_5  87 alfltllaavpasiak....kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaep 181
                 a fl ++a + a+i +    ++  +++   ++ ++ pvgtGP++l e+  gq+i+l rnp+Yw +g p+l ++++   +  + r+ +l++Ge+d+ a+p
  EHU00720.1 175 ASFLWHMATHYAPILSkeyaDS-LDKTGHQETLDRLPVGTGPFQLSEYRSGQYIRLARNPYYW-KGVPRLQQVVIDLGAGGAGRLSKLLTGECDVLAYP 271
                 *999999999999999777444.445555999*******************************.*********************************** PP

                 TCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHH CS
   SBP_bac_5 182 ppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLk 280
                  +s+i  l++++ l +   +pg+++ ylafNt+kpp+d ++vR+Al++Ai++e +++ +++g+a+ a+s+lp  s+++d + +    aydp+kA++ L+
  EHU00720.1 272 AASQISILRDDPRLRM-TLRPGMNIAYLAFNTRKPPLDRPEVRHALALAINNERLMESIYYGTAETAASILPRASWAYDTDASIT--AYDPKKARAALE 367
                 ****************.*************************************************************9999987..89********** PP

                 HTT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCT CS
   SBP_bac_5 281 eaGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssga 375
                 +aG +d   ++       ++ +++++++++  ++aeliq++l++iG++v++ +v+  + ++++  + ++d+ l gw +d+ dpd+f+ p+ls++++
  EHU00720.1 368 AAGVTDLHLRL-------VVPAASQSWNPAPlKTAELIQADLAQIGVNVTIVPVEG-RFQEAQLMAMNHDLTLAGWATDSNDPDSFFRPLLSCAAI 455
                 *******8654.......45555555555555************************.999999*****************************9876 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05      0.27       5      35 ..     239     269 ..     238     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
                   S-EEEEEEEEEE-SSSSSCHHHHHCCHHHHC CS
  Ribosomal_L5   5 vPrleKivinmgvGeagedkkllekaakeLa 35 
                   vPrl+++vi  g G ag+ +kll++  ++La
    EHU00720.1 239 VPRLQQVVIDLGAGGAGRLSKLLTGECDVLA 269
                   8*********************998777775 PP

>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.62   3.7e+03      49      59 ..     188     199 ..     186     200 .. 0.77
   2 ?   10.2   0.1   7.8e-05      0.47      23      60 ..     455     492 ..     447     493 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.62
  HTH_ABP1_N  49 iLSskY.ayLDd 59 
                 iLS+ Y ++LD+
  EHU00720.1 188 ILSKEYaDSLDK 199
                 8*****447886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.8e-05
  HTH_ABP1_N  23 rpsqkaliaWFeqeygqkisqstvSeiLSskYayLDda 60 
                   sq++ + W    ++ +++ + +S+ LS + ++ D+a
  EHU00720.1 455 IASQTNYAHWCSPAFDSTLKNALLSQQLSGRIESYDKA 492
                 579****************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3909.86
//
Query:       EHU00721.1  [L=321]
Description: putative membrane component of an ABC superfamily antimicrobial peptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-42  144.6  12.6    2.8e-42  144.6  12.6    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.6     0.065   1.2e+03      19      43 ..       5      29 ..       2      54 .. 0.56
   2 !  144.6  12.6   1.6e-46   2.8e-42       1     181 [.      92     311 ..      92     315 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.065
  BPD_transp_1 19 llrpliivllslPsfvlaillvlvf 43
                  +lr+l+ ++ +l ++ l+ + +  f
    EHU00721.1  5 ILRRLVLLVITLFFLSLVSFSLSYF 29
                  4555555555555555555555444 PP

  == domain 2  score: 144.6 bits;  conditional E-value: 1.6e-46
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf........................................vilsilghlilpvi 57 
                   gi+lGi a+  r+k+ dk+++ +  +++s+P+f+la+l++l+f                                        +++s+l +lilpv 
    EHU00721.1  92 GIPLGICAGALRHKWQDKVISAFALLGFSIPVFWLALLFTLFFsltlgwlpvsgrydllypvqnitgfalidawlspspwrheMMISVLMYLILPVT 188
                   89**************************************999****************************************************** PP

  BPD_transp_1  58 illllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis 154
                   +l++  ++ +vrl+r +  ++++k++v+aa ++G+sr++++r++vl nalpp+i+ l+l+f ++l+ a+++e++++wpGlg++l++ai ++dy++is
    EHU00721.1 189 VLAMAPTTEIVRLLRISTSDVVDKNYVKAAATRGLSRFTVIRRHVLHNALPPVIPRLGLQFSSMLTLAMITEMVFNWPGLGRWLINAIRQQDYAAIS 285
                   ************************************************************************************************* PP

  BPD_transp_1 155 nggvlalviavlllnlvadilqrlldp 181
                    +gv +++ +v+++n++adi+ ++l+p
    EHU00721.1 286 -AGVMVTGGLVIVVNVLADIVGAALNP 311
                   .***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2347.86
//
Query:       EHU00722.1  [L=296]
Description: putative membrane component of an ABC superfamily antimicrobial peptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-22   78.8  10.0    4.2e-22   78.8  10.0    1.6  2  BPD_transp_1   Binding-protein-dependent transport system inn
    7.4e-10   38.7   3.8    5.2e-09   35.9   0.1    2.7  2  OppC_N         N-terminal TM domain of oligopeptide transport
      0.005   17.2   2.2      0.016   15.5   2.2    1.9  1  Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.47   2.8e+03     137     147 ..      59      69 ..      29     111 .. 0.54
   2 !   78.8  10.0   7.1e-26   4.2e-22       2     183 ..     114     295 ..     113     296 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.47
  BPD_transp_1 137 lgtllleailg 147
                   lg++ll ++++
    EHU00722.1  59 LGYQLLPPSWS 69 
                   44444444443 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 7.1e-26
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   ++lGi+a+ + +++ + +l  + ++lls+Ps++lai++v        lg  l  +++++ l  ++ +vr i++a+ ++l+k++v aar++Ga+ + i
    EHU00722.1 114 LVLGIVAG-MTHGVRSAVLNHVLDTLLSIPSLLLAIIVV------AFLGpRLEHALLAVWLALMPRLVREIYSAVHDELEKEYVIAARLDGATSINI 203
                   79******.9*****************************......7788556666788888888999****************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldprv 183
                   +++ +lPn+lp++i+ +  a+  ++ + ++l fl     lg +l ++++g ++   +          + + +al ++vl +nl+ d + r+++  v
    EHU00722.1 204 LWHAILPNVLPMLISEITRALSMAILDIAALGFLD----LGAQLPSPEWGAMLGDSLelvyvapwtvMLPGAALMVSVLMVNLLGDGIRRAVEAGV 295
                   ***********************************....***************999*********************************999766 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   8.7e-13   5.2e-09       1      51 []      14      66 ..      14      66 .. 0.92
   2 ?    2.5   1.0     0.024   1.4e+02      23      36 ..     145     158 ..     143     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 8.7e-13
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp.qdli.qnllpP 51
                s +++ w+ F  +  A++gl  + +lll+++f+ ++aPy+  q++  ++llpP
  EHU00722.1 14 SAFRQSWHHFYGDMPAMIGLYGFGTLLLLCLFGHFLAPYNIdQQFLgYQLLPP 66
                6689************************************996666588*999 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.024
      OppC_N  23 lllllliaifaPli 36 
                 ll+++++a+++P +
  EHU00722.1 145 LLAIIVVAFLGPRL 158
                 7899999****987 PP

>> Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.2   2.7e-06     0.016      24      78 ..      96     150 ..      92     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.7e-06
  Cyd_oper_YbgE  24 aaatsglshgllllllwavcagvvhGvGFrprkalwrllFsPllallilllalil 78 
                    a +++++s ++l + +wa+  g+v G+   +r+a++  ++  ll+++ llla+i+
     EHU00722.1  96 APTVGSASLVTLFATFWALVLGIVAGMTHGVRSAVLNHVLDTLLSIPSLLLAIIV 150
                    66789999*******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2189.59
//
Query:       EHU00723.1  [L=331]
Description: peptide transport system ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-29  101.4   0.0    5.1e-27   95.1   0.0    2.0  2  ABC_tran         ABC transporter
    2.8e-17   63.0   0.2    7.1e-17   61.7   0.2    1.7  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    2.6e-08   34.0   0.0    3.2e-06   27.2   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0012   19.1   1.9        1.3    9.3   0.1    2.3  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.021   14.3   0.1       0.12   11.8   0.1    1.9  1  SMC_N            RecF/RecN/SMC N terminal domain
      0.035   14.5   0.1       0.68   10.4   0.0    2.4  2  AAA              ATPase family associated with various cellul
      0.053   13.5   0.1       0.15   12.0   0.0    1.7  2  AAA_5            AAA domain (dynein-related subfamily)
        0.1   12.3   0.0         12    5.6   0.0    2.3  2  IstB_IS21        IstB-like ATP binding protein
       0.18   11.5   0.1       0.84    9.3   0.0    1.9  2  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   2.6e-30   5.1e-27       2     137 .]      24     188 ..      23     188 .. 0.96
   2 ?    4.4   0.0     0.026        51      27     110 ..     198     280 ..     196     284 .. 0.72

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 2.6e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 ++++l+l ege+ ++vGe+G+GKS ++k+++g +++    t++++ +d+ dl +    ++++++ +++++++qe  ++l+p  +v+++           
  EHU00723.1  24 DRINLSLTEGEIRGLVGESGSGKSLVAKAICGVTNDnwrvTADRMVFDDVDLLRlsprERRRIVGHNVSMIFQEpqSCLDPSESVGRQlmqaiprwtyk 122
                 789******************************99888999999999999999999999999************88899******999*********** PP

                 .........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                          ++++++ ++l+++g+k+ ++++++s p++L +G+ q+v++a al+++p+ll++DEpt+
  EHU00723.1 123 gpwmkrfwfWRKNRAIELLHRVGIKD-HKDIMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTN 188
                 *************************9.999**9*********************************8 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.026
                 HHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  27 LlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...esdeeiekalsklglkelkdtvvksspssLS 110
                 +++ll++l ++++ +ill ++dl++ ++   r ++ ++ q+ +  +   + ++    +++ + +a+  +g +  +++++    ++LS
  EHU00723.1 198 IFRLLSRLNQNNNTTILLISHDLRTLSHWADRINVMYCGQTVETAQSEDLMTTphhPYTQALIRAMPDFGRPLPHKSRL----NTLS 280
                 7899*********************999999999999999943333332222233466666666666666666666666....5565 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.2   3.6e-20   7.1e-17       1      65 []     239     306 ..     239     306 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 3.6e-20
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+++s++l++ p+HPYT+aL+r++p++ r+     +l ++ g  psle l+ GC+  pRCp+a+ +C
  EHU00723.1 239 VETAQSEDLMTTPHHPYTQALIRAMPDFGRPLPhksRLNTLSGAIPSLESLPIGCRLGPRCPYAQRKC 306
                 8**************************9998777779******************************* PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0      0.01        20       4      19 ..      38      53 ..      36      82 .. 0.77
   2 !   27.2   0.0   1.6e-09   3.2e-06     165     302 ..     118     223 ..      92     224 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
      AAA_21  4 liGpNgsGKSnLLdal 19
                l+G  gsGKS + +a+
  EHU00723.1 38 LVGESGSGKSLVAKAI 53
                9**************9 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 1.6e-09
      AAA_21 165 rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllli 263
                 r+ +   + + f f++++r ++ l r   +++  ++ +                               ++el +G  +   +  a++ a+++ +ll+ 
  EHU00723.1 118 RWTYKGPWMKRFWFWRKNRAIELLHRVGIKDHKDIMRSF------------------------------PYELTEGECQKVMI--AIALANQP-RLLIA 183
                 666666666666666666666666666666666666665..............................67888888888333..44444444.***** PP

      AAA_21 264 DEpEngLHPkllrrllell.kelsrngaQviltTHSplll 302
                 DEp n ++P  ++ +++ll +++++n++ ++l +H+   l
  EHU00723.1 184 DEPTNAMEPTTQAQIFRLLsRLNQNNNTTILLISHDLRTL 223
                 *******************555555**********97655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2   0.00092       1.8      10      24 ..      38      52 ..      33      55 .. 0.91
   2 !    9.3   0.1   0.00066       1.3      59     135 ..     139     222 ..     131     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00092
      AAA_22 10 vtGesGtGKTtllrr 24
                ++GesG+GK+++++ 
  EHU00723.1 38 LVGESGSGKSLVAKA 52
                79**********996 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00066
      AAA_22  59 ellralglelka.......erlsseell.ealeqalraravielliiDEaqhlr...seealeeLrsllnlsrkgvqliLvGtpelrk 135
                 ell+ +g + ++       ++l++ e+   +++ al ++   +lli DE  + +   +++++  L s+ln  + + + iL + ++lr 
  EHU00723.1 139 ELLHRVGIKDHKdimrsfpYELTEGECQkVMIAIALANQ-P-RLLIADEPTNAMeptTQAQIFRLLSRLN--QNNNTTILLISHDLRT 222
                 556666665555777777788899999944555555555.5.6*********554654777777778888..8999999999988886 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   5.9e-05      0.12      25     208 ..      34     229 ..      22     241 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--........BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEE.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.. RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk........skekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seyk.. 112
                 ++  +vG+ GSGKs +  Ai+ v  +    + r +  +++++          +e++++   +v+++f+++++     +++ s+ r++++     +yk  
  EHU00723.1  34 EIRGLVGESGSGKSLVAKAICGVTND----NWRVTA-DRMVFDdvdllrlsPRERRRIVGHNVSMIFQEPQSC---LDPSESVGRQLMQAIPrWTYKgp 124
                 56789***************655443....333332.222222233344467778888888899999988887...33333444444443321233211 PP

                 .ETTE.EE-HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SS CS
                 .xxxx.xxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       SMC_N 113 .ingk.evtkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislr 198
                  +++    +k+   ell+++gi+ +         +L  Ge + v++a+ +A q      l + De   a+  +  +++ +ll   ++++n+ ++ is++
  EHU00723.1 125 wMKRFwFWRKNRAIELLHRVGIKDHkdimrsfpyELTEGECQKVMIAIALANQ----PRLLIADEPTNAMEPTTQAQIFRLLSrlNQNNNTTILLISHD 219
                 02222134667778888888888777888888888888887777777776643....346777888888888888888887774445556777788887 PP

                 HHHCCC-SCE CS
                 xxxxxxxxxx RF
       SMC_N 199 eemlekadkl 208
                  ++l++    
  EHU00723.1 220 LRTLSHWADR 229
                 7777665444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00034      0.68       3      23 ..      38      58 ..      37     100 .. 0.78
   2 ?    1.4   0.2       0.2     4e+02      78     115 ..     187     223 ..     161     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
                EESSTTSSHHHHHHHHHHHHT CS
         AAA  3 lyGppGtGKTllakavakelg 23
                l+G  G GK+l+aka++  ++
  EHU00723.1 38 LVGESGSGKSLVAKAICGVTN 58
                79***************8764 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
                 CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGS CS
         AAA  78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkl 115
                 ++  e ++++q+++ l++++++ +++++++++++ ++l
  EHU00723.1 187 TNAMEPTTQAQIFRLLSRLNQN-NNTTILLISHDLRTL 223
                 4556778899999999999996.558888888877666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.7e-05      0.15       4      29 ..      38      63 ..      37      67 .. 0.89
   2 ?   -2.4   0.0       2.2   4.3e+03      84      84 ..     197     197 ..     159     222 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.7e-05
                EE--SSSSHHHHHHHGGGGBS--EEE CS
       AAA_5  4 LvGppGtgKselaerlaaalnrevey 29
                LvG++G+gKs +a+ ++ ++n+++ +
  EHU00723.1 38 LVGESGSGKSLVAKAICGVTNDNWRV 63
                8*******************877755 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.2
                 H CS
       AAA_5  84 s 84 
                  
  EHU00723.1 197 Q 197
                 2 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0059        12      52      68 ..      38      54 ..      27      86 .. 0.81
   2 ?    4.5   0.0     0.013        27      84     155 ..     150     227 ..     135     239 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0059
   IstB_IS21 52 llGpsGvGKshlaialg 68
                l+G sG GKs +a a+ 
  EHU00723.1 38 LVGESGSGKSLVAKAIC 54
                89*************96 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.013
   IstB_IS21  84 edLveelkrarrdgklar...alkrllkvdllilDdlgllpldqaeaellfeviekryerr...siiitsnl.pfaewd 155
                 +d++++   + ++g+ ++   a++   +++lli D+  ++ ++   ++++f+++++  +++    ++i+ +l ++++w 
  EHU00723.1 150 KDIMRSFPYELTEGECQKvmiAIALANQPRLLIADEP-TNAMEPTTQAQIFRLLSRLNQNNnttILLISHDLrTLSHWA 227
                 555565555555555555111445556789***9996.45666666677777777655543000344444442456665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00042      0.84      27      44 ..      38      55 ..      21      69 .. 0.86
   2 ?   -0.7   0.0      0.51     1e+03     102     119 ..     187     204 ..     169     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00042
                     EECSTTSSHHHHHHHHHH CS
  Sigma54_activat 27 itGesGtGKellaraihe 44
                     ++GesG+GK+l+a+ai  
       EHU00723.1 38 LVGESGSGKSLVAKAICG 55
                     68************9965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
                      GGGS-HHHHHHHHHHHHH CS
  Sigma54_activat 102 igelplelQekLlrvlqe 119
                       + +++++Q++++r+l +
       EHU00723.1 187 TNAMEPTTQAQIFRLLSR 204
                      4679999******99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2256.39
//
Query:       EHU00724.1  [L=267]
Description: peptide transport system ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-32  110.6   0.0    1.3e-31  110.0   0.0    1.3  1  ABC_tran         ABC transporter
    2.2e-06   28.0   0.1    6.7e-06   26.4   0.1    1.7  1  AAA_22           AAA domain
      5e-05   22.8   0.9    0.00082   18.9   0.9    2.1  1  SMC_N            RecF/RecN/SMC N terminal domain
    0.00032   20.6   0.2    0.00063   19.7   0.0    1.5  2  RsgA_GTPase      RsgA GTPase
    0.00069   19.3   0.1     0.0013   18.4   0.1    1.4  1  AAA_29           P-loop containing region of AAA domain
    0.00078   19.2   0.1     0.0099   15.6   0.0    2.2  2  IstB_IS21        IstB-like ATP binding protein
    0.00081   19.2   0.0    0.00081   19.2   0.0    1.1  1  AAA_15           AAA ATPase domain
     0.0036   17.8   0.0     0.0053   17.3   0.0    1.4  1  AAA_23           AAA domain
     0.0051   16.9   0.0      0.008   16.3   0.0    1.3  1  DUF87            Helicase HerA, central domain
  ------ inclusion threshold ------
      0.011   15.5   0.2       0.03   14.1   0.1    1.7  2  AAA_24           AAA domain
      0.011   15.5   0.4      0.025   14.4   0.2    1.6  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.013   15.9   0.0      0.035   14.5   0.0    1.7  1  RNA_helicase     RNA helicase
      0.013   15.9   0.1       0.02   15.3   0.1    1.4  1  AAA_16           AAA ATPase domain
      0.017   15.1   0.1       0.04   13.8   0.1    1.6  1  NACHT            NACHT domain
      0.027   13.4   0.1      0.052   12.5   0.0    1.5  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.032   13.0   0.6        1.1    8.0   0.1    2.1  2  ABC_ATPase       Predicted ATPase of the ABC class
      0.042   13.5   0.0       0.12   12.1   0.0    1.7  1  Sigma54_activat  Sigma-54 interaction domain
      0.042   13.7   0.1      0.081   12.8   0.1    1.4  1  DUF3652          Huntingtin protein region
      0.059   12.3   0.0      0.096   11.6   0.0    1.3  1  AAA_10           AAA-like domain
       0.06   13.8   0.0          1    9.8   0.0    2.2  2  AAA              ATPase family associated with various cellul
      0.063   13.4   0.1       0.26   11.4   0.0    1.9  2  MMR_HSR1         50S ribosome-binding GTPase
      0.074   13.2   0.0       0.16   12.1   0.0    1.7  1  AAA_33           AAA domain
      0.084   12.0   0.0       0.12   11.5   0.0    1.3  1  NB-ARC           NB-ARC domain
      0.084   12.2   0.0       0.12   11.7   0.0    1.2  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.095   12.9   0.0        1.6    9.0   0.0    2.2  2  AAA_28           AAA domain
       0.12   12.5   0.0       0.27   11.4   0.0    1.6  1  Sigma54_activ_2  Sigma-54 interaction domain
       0.17   10.5   0.1       0.48    9.0   0.0    1.6  2  AAA_13           AAA domain
       0.19   12.2   0.0       0.37   11.3   0.0    1.4  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0     2e-34   1.3e-31       2     136 ..      30     177 ..      29     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 2e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren...........esdeeiek 87 
                 k vs++l+e +++ai+GenG+GKStL+k+l+g + pteGei +d++ l+  +    +++i++++q+  ++l+p+ +v +            +++++ ++
  EHU00724.1  30 KSVSFTLREKQTLAIIGENGSGKSTLAKMLSGTVAPTEGEIIIDDHALSFGDYGYRSQRIRMIFQDpsTSLNPRQRVSQIlelplrlntdlDAEAREKR 128
                 78****************************************************************98899999999888*********9988888888 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ +l++++l  +++++ p+ L  Gqkqr+ laral+ +pk++++DE+ 
  EHU00724.1 129 IIGTLRQVGLLRDHAGYYPHMLAPGQKQRLGLARALILQPKVIIADEAL 177
                 999999999999***********************************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1     1e-08   6.7e-06       4     130 ..      38     208 ..      35     214 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee................erpevvfvtlpsstsskdllrellralglelka................ 70 
                 +++ l+++Ge G+GK+tl+++l  +       +e                 r++ +++  + +++s + ++++ ++l+l+l                  
  EHU00724.1  38 EKQTLAIIGENGSGKSTLAKMLSGTVAP----TEgeiiiddhalsfgdygYRSQRIRMIFQDPSTSLNPRQRVSQILELPLRLntdldaearekriigt 132
                 67889******************99732....22456799**********8888888888888877777888888877777777789988888888888 PP

      AAA_22  71 ..........erlsseellealeqalrarav.........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGt 130
                           +      ++ ++    ++++          ++++i DEa   l+   + ++++   +l++  ++g++ i+v +
  EHU00724.1 133 lrqvgllrdhA-----GYYPHMLAPGQKQRLglaralilqPKVIIADEALAsLDmtmRSQLVNLMLELQE--KHGIAYIYVTQ 208
                 88887444443.....33344444444444466666699999*******998965433555555566666..99998888766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.9   1.3e-06   0.00082      23     213 ..      38     224 ..      22     230 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--...BTTCSSTTEEEEEEEEEETTEESSSSSSC...EEEEEEEETTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk...skekasvkkaeveitfdnedkklkiekee...vsisrrvkrkgeseyking 115
                 +k+  ai+G+NGSGKs l   ++ +        +  ++ + +i     s       + ++ ++f++++ +l+ ++     +++  r+ ++ + e + ++
  EHU00724.1  38 EKQTLAIIGENGSGKSTLAKMLSGT--------VAPTEGEIIIDDhalSFGDYGYRSQRIRMIFQDPSTSLNPRQRVsqiLELPLRLNTDLDAEAREKR 128
                 567789************9988433........44556666665555556677888999*****99999954444431114444455555555555555 PP

                 EEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvt 212
                    t ++v  l  +ag ++++L  G+k+ + la  + +   +p+ + + De  a LD + ++++++l+ e +++    +i ++ + +m+++ +  v v+
  EHU00724.1 129 IIGTLRQVGLLRDHAGYYPHMLAPGQKQRLGLARALIL---QPK-VIIADEALASLDMTMRSQLVNLMLELQEKhgIAYIYVTQHLGMMKHISDKVLVM 223
                 56666777777777777777*******98888765544...444.5678*********99999999877666653577888888889998886666665 PP

                 E CS
                 x RF
       SMC_N 213 k 213
                 +
  EHU00724.1 224 H 224
                 5 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   9.9e-07   0.00063      70     129 ..       9      69 ..       1      77 [. 0.82
   2 ?   -3.0   0.0       9.3     6e+03      31      48 ..     185     202 ..     167     223 .. 0.56

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.9e-07
                  HHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  70 eelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                  +  +++ y++ l + ++ e++++++  l++ +t +++G+ G GKStL ++l ++     ge
   EHU00724.1   9 NLSKTFRYRTGLFRRQHVEAVKSVSFTLREkQTLAIIGENGSGKSTLAKMLSGTVAPTEGE 69 
                  55666778888888889999********99899******************9987665555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.3
                  -HHHHHHHHHHHHHTT-E CS
  RsgA_GTPase  31 slnlldrfLvlaeekgie 48 
                  +++l++ +L l e++gi 
   EHU00724.1 185 RSQLVNLMLELQEKHGIA 202
                  333333333333333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1     2e-06    0.0013      16      38 ..      33      55 ..      25      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTl 38
                ++++++k++  ++G++GsGKSTl
  EHU00724.1 33 SFTLREKQTLAIIGENGSGKSTL 55
                45566566899***********9 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-05    0.0099      24      68 ..      14      60 ..       3      72 .. 0.77
   2 ?    1.2   0.1       0.4   2.6e+02     103     144 ..     162     202 ..     150     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
   IstB_IS21 24 fraarsl.dkrkvkeLatlsfi.ekkenivllGpsGvGKshlaialg 68
                fr  ++l  +++v+++ + sf+ ++k+ ++++G  G GKs la  l+
  EHU00724.1 14 FRYRTGLfRRQHVEAVKSVSFTlREKQTLAIIGENGSGKSTLAKMLS 60
                4444454145668899*****637899****************8875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.4
   IstB_IS21 103 lkrllkvdllilDdlgllpldqaeaellfeviekryerrsii 144
                  + +l+++++i D+ +l  ld   +++l +++ +  e++ i+
  EHU00724.1 162 RALILQPKVIIADE-ALASLDMTMRSQLVNLMLELQEKHGIA 202
                 44566778888777.799999999999999998888887664 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.3e-06   0.00081      21      83 ..      36      95 ..      28     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.3e-06
      AAA_15 21 lsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef 83
                l e+ +  +iG+N+sGKS+++++l      +    + +i i+++ l+  ++ ++s++i+  ++ 
  EHU00724.1 36 LREKqTLAIIGENGSGKSTLAKMLSGTVAPT----EGEIIIDDHALSFGDYGYRSQRIRMIFQD 95
                55554789****************6555544....67777777777777777777777766665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.3e-06    0.0053      16      37 ..      33      57 ..      19     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.3e-06
      AAA_23 16 dF...skgltlItGpNGaGKTTild 37
                 F   +k   +I+G+NG+GK+T+  
  EHU00724.1 33 SFtlrEKQTLAIIGENGSGKSTLAK 57
                33557888999***********976 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-05     0.008      26      81 ..      42      94 ..      32     129 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-05
       DUF87 26 lAilgsTGsGKSntvavLleellekkgatililDpH....GEYgkalekllsekvkvitp 81
                lAi+g+ GsGKS++++ L   ++    ++i+ +D H    G+Yg  +     +++++i +
  EHU00724.1 42 LAIIGENGSGKSTLAKMLSGTVA-PTEGEII-IDDHalsfGDYGYRS-----QRIRMIFQ 94
                8*************998877777.5555555.555546667777777.....44444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.7e-05      0.03       2      22 ..      39      59 ..      38      74 .. 0.84
   2 ?   -1.6   0.0         3   1.9e+03     129     170 ..     208     223 ..     184     262 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                k+ ++i+G++g+GK+tlak+l
  EHU00724.1 39 KQTLAIIGENGSGKSTLAKML 59
                6789***************99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
      AAA_24 129 ahektrkdedpegeakytrlepklgkktanelkeevDlvlra 170
                  h+ + k  ++                           vl +
  EHU00724.1 208 QHLGMMKHISD--------------------------KVLVM 223
                 44433333333..........................33322 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   3.8e-05     0.025       3      21 ..      43      61 ..      42      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-05
      AAA_21  3 vliGpNgsGKSnLLdaldl 21
                ++iG NgsGKS+L + l++
  EHU00724.1 43 AIIGENGSGKSTLAKMLSG 61
                79***********999854 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.4e-05     0.035       3      56 ..      44      93 ..      42     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.4e-05
  RNA_helicase  3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfw.dgYtgqevvvid 56
                  + G++g GKStlak L+ +++     ++++++++   + +f  +gY++q + +i+
    EHU00724.1 44 IIGENGSGKSTLAKMLSGTVA-----PTEGEIIIDDHALSFGdYGYRSQRIRMIF 93
                  89*************888888.....88899999888888887899988876554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   3.2e-05      0.02       6      88 ..      23      95 ..      20     197 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-05
      AAA_16  6 eeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde 88
                ++ +e+++s+  ++r+   + + ++Ge G+GKs+l+++l   +  ++g   +  ++ ++          ++  r++ +r + ++
  EHU00724.1 23 RQHVEAVKSVSFTLREK--QTLAIIGENGSGKSTLAKMLSGTVAPTEGEIiIDDHALSF---------GDYGYRSQRIRMIFQD 95
                55555555555555555..6799**************9997666664322133333333.........3333333333333333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   6.3e-05      0.04       2      22 ..      41      61 ..      40      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                ++++ Ge+GsGK+tL++ l  
  EHU00724.1 41 TLAIIGENGSGKSTLAKMLSG 61
                789*************98865 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.1e-05     0.052      13      59 ..      37      82 ..      27     105 .. 0.79
   2 ?   -3.5   0.0       5.5   3.6e+03     264     288 ..     192     216 ..     182     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.1e-05
  TrwB_AAD_bind 13 retqhilivGttGsGKtqalekllrairargdraivlDltGafvsrf 59
                   re+q ++i+G  GsGK++ l k+l +  a  +  i++D +     ++
     EHU00724.1 37 REKQTLAIIGENGSGKST-LAKMLSGTVAPTEGEIIIDDHALSFGDY 82
                   7999************97.6678888888888888888766555555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.5
  TrwB_AAD_bind 264 llaegRkfGgavvlglqsiaqlrev 288
                    +l+   k+G+a++   q+   ++++
     EHU00724.1 192 MLELQEKHGIAYIYVTQHLGMMKHI 216
                    5666678888888888888777765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.04        26     247     268 ..      42      63 ..      28      67 .. 0.84
   2 ?    8.0   0.1    0.0017       1.1     375     419 ..     187     231 ..     171     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.04
                 EEEEE-TTSSHHHHHHHHHHCC CS
  ABC_ATPase 247 tlIvGggfhGKsTLLeAlekGv 268
                  +I+G +  GKsTL + l+  v
  EHU00724.1  42 LAIIGENGSGKSTLAKMLSGTV 63 
                 579***********99987665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0017
                 -HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE- CS
  ABC_ATPase 375 plvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdv 419
                  lv+++ el +k+g+  i v+  +g + +++d+v++m++ ++ + 
  EHU00724.1 187 QLVNLMLELQEKHGIAYIYVTQHLGMMKHISDKVLVMHQGEVVER 231
                 5889999******************************99766655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.12      10      46 ..      27      63 ..      21      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                     HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat 10 elleqikkvaktdlsvlitGesGtGKellaraiheas 46
                     e++++++ + + + ++ i Ge+G+GK++la+++  + 
       EHU00724.1 27 EAVKSVSFTLREKQTLAIIGENGSGKSTLAKMLSGTV 63
                     56667777778889999**************987655 PP

>> DUF3652  Huntingtin protein region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00013     0.081       1      30 [.     163     191 ..     163     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
     DUF3652   1 aiigiPrIiqLcdglmASgqpalrheipal 30 
                 a+i +P++i   d+  AS++  +r+++  l
  EHU00724.1 163 ALILQPKVI-IADEALASLDMTMRSQLVNL 191
                 79*******.**************998765 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015     0.096      22      54 ..      40      72 ..      25      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      AAA_10 22 sasliiGdlGnGKSvlakllvlyisllggkali 54
                   +iiG+ G GKS lak+l   ++  +g ++i
  EHU00724.1 40 QTLAIIGENGSGKSTLAKMLSGTVAPTEGEIII 72
                4569****************9988888877765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0016         1       3      52 ..      44      95 ..      42     110 .. 0.69
   2 ?    1.6   0.0      0.54   3.5e+02      58     114 ..     167     212 ..     149     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0016
                EESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfke 52
                ++G  G GK++lak +  ++   + e + i+ + l     g ++++ir++f++
  EHU00724.1 44 IIGENGSGKSTLAKMLSGTVaptEGE-IIIDDHALSFGDYGYRSQRIRMIFQD 95
                78**************9997332122.33333333322568888888888887 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.54
                 TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGG CS
         AAA  58 kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdk 114
                 +p++++ DE+ a             +++ +qL++ + ++++k + +  i +t++  +
  EHU00724.1 167 QPKVIIADEALASLD----------MTMRSQLVNLMLELQEK-HGIAYIYVTQHLGM 212
                 477777777554443..........45788888888888886.44888888887443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00041      0.26       2      25 ..      42      65 ..      41      77 .. 0.86
   2 ?   -0.8   0.0       2.4   1.6e+03      51     100 ..     140     195 ..     117     209 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00041
                EEEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekai 25
                 ai+G   +GKStL + l+g++a 
  EHU00724.1 42 LAIIGENGSGKSTLAKMLSGTVAP 65
                69****************998664 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.4
                 EECGGCSS.....HHHHHHHHHHHHHHHHC...TSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  51 vDtpGlie.....gaseekglgkaflalee...adlillvvdaseeklkpldeeleel 100
                  D +G +      g++++ gl++a+    +   ad +l  +d++ +  ++l + + el
  EHU00724.1 140 RDHAGYYPhmlapGQKQRLGLARALILQPKviiADEALASLDMTMR--SQLVNLMLEL 195
                 5667743223333555566777766653333445666666665522..3333334444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00025      0.16       4      33 ..      44     111 ..      42     208 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
      AAA_33   4 lvGlpGsGKstlaerl...lkklgavllssdt...................................l 33 
                 ++G +GsGKstla+ l   ++++ ++++  d                                    +
  EHU00724.1  44 IIGENGSGKSTLAKMLsgtVAPTEGEIIIDDHalsfgdygyrsqrirmifqdpstslnprqrvsqilE 111
                 6899**********996655555577766666566666666555444444444444444444444440 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.12       2      39 ..      23      58 ..      22      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
                HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHH CS
      NB-ARC  2 eksvekviekLlekdelqslvvalvGmgGvGKttlakq 39
                 ++ve+v+   +   e q   +a+ G  G+GK+tlak 
  EHU00724.1 23 RQHVEAVKSVSFTLREKQ--TLAIIGENGSGKSTLAKM 58
                578888888878777888..9**************986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.12      21      54 ..      38      71 ..      23     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
  Mg_chelatase 21 GgHnlllvGppGsGKtmlakrlpsllpplseeea 54
                   +  l ++G  GsGK+ lak l++ ++p + e +
    EHU00724.1 38 EKQTLAIIGENGSGKSTLAKMLSGTVAPTEGEII 71
                  5667899****************99998876554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0025       1.6       3      22 ..      43      62 ..      41      94 .. 0.84
   2 ?    1.8   0.0      0.38   2.5e+02     109     155 ..     160     206 ..     114     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0025
      AAA_28  3 vitGgestGKTtlleaLaar 22
                +i+G  ++GK+tl++ L+ +
  EHU00724.1 43 AIIGENGSGKSTLAKMLSGT 62
                79***************965 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.38
      AAA_28 109 ydlvfllppapeidddgeRredleereaiderlrealrelgipviiv 155
                  ++ ++l+p   i d +    d+  r ++ ++++e+ +++gi +i v
  EHU00724.1 160 LARALILQPKVIIADEALASLDMTMRSQLVNLMLELQEKHGIAYIYV 206
                 466788888888866666778999999999************99988 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00042      0.27      19      47 ..      37      65 ..      23      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00042
                     T-SS-EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2 19 qsklpvfltGekGsgkelvArlLhknsgp 47
                     ++k  + ++Ge+Gsgk++ A++L+   +p
       EHU00724.1 37 REKQTLAIIGENGSGKSTLAKMLSGTVAP 65
                     5677889****************876655 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00075      0.48      21      38 ..      44      61 ..      39      78 .. 0.87
   2 ?   -1.8   0.0       1.4   8.8e+02     525     569 ..     166     209 ..     160     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00075
      AAA_13 21 iYGwNGaGKTtLSrllrs 38
                i G NG+GK+tL+++l+ 
  EHU00724.1 44 IIGENGSGKSTLAKMLSG 61
                67*************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTH 569
                  + k+++ D    SLD ++    ++l+ +   +k+ ++ +++  H
  EHU00724.1 166 LQPKVIIADEALASLDMTMRSQLVNLMLELQ-EKHGIAYIYVTQH 209
                 578999999999****999999999999986.8888888887544 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00058      0.37       1      25 [.     229     253 ..     229     264 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00058
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsv 25 
                 vErg +++++ +plH  Tk L++s 
  EHU00724.1 229 VERGGTADVLASPLHDLTKRLINSH 253
                 8**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.52u 0.34s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 1709.22
//
Query:       EHU00725.1  [L=262]
Description: enoyl-[acyl-carrier-protein] reductase, NADH-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-86  289.3   0.2    2.3e-86  289.1   0.2    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.7e-15   55.6   0.0    5.8e-15   55.3   0.0    1.1  1  adh_short     short chain dehydrogenase
     0.0065   16.4   0.0      0.011   15.7   0.0    1.3  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.1   0.2   3.9e-90   2.3e-86       1     234 []      13     252 ..      13     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.1 bits;  conditional E-value: 3.9e-90
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH.- CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpflet.s 91 
                   G+a   +I+++iA+a++++Gae+++t++n+++k rvee+a++lg++ vl+cDV+++e++++l++e+++++ k+D++v+++g+ap   l+g+++++ +
    EHU00725.1  13 GVAskLSIAYGIAQAMHKQGAELAFTYQNDKLKGRVEEFAKDLGSDiVLPCDVAEDESIQSLFAELAKTWPKFDGFVHSIGFAPGdqLDGDYVNAvT 109
                   788778****************************************66*********************************************955* PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel 188
                   re+f+ a+d+++ys++++ak+++ ++++++++++ls++gaer++pnyn++g aKa+lea +ry+A+ +gp+g+RvNavs+gpi+Tlaasgik+f+++
    EHU00725.1 110 REGFKIAHDISAYSFVAMAKECRAMLNPNSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAVSAGPIRTLAASGIKDFRKM 206
                   ************************************************************************************************* PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   l+++ea +p++r++t+e+v++ a+fL+sd+a +itG++++vDgG++
    EHU00725.1 207 LAHCEAVTPIRRTVTIEDVGNSAAFLCSDLAGGITGEIVHVDGGFS 252
                   ********************************************96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   9.7e-19   5.8e-15       1     189 [.       7     199 ..       7     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 9.7e-19
                 SEEEEESTTS..HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.....S--SS CS
   adh_short   1 kvvlvtGass..GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.....tgsgp 92 
                 k +l+tG +s   I + ia+++ k+Ga++++  ++++kl+  ++e+ ++  + +++++Dv++ e+++ l+++ +k + k d +v+  G           
  EHU00725.1   7 KRILITGVASklSIAYGIAQAMHKQGAELAF-TYQNDKLKGRVEEFAKDLGSDIVLPCDVAEDESIQSLFAELAKTWPKFDGFVHSIGFapgdqLDGDY 104
                 6799***9885579999***********987.6777889999999999978899***********************************8877544555 PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 ++ ++ e ++   ++   + + +++++ +aml + + +  + s   ++ + +++ + + +Ka +++ +r +a+ + p+g+rvnav  G+++T  a  
  EHU00725.1 105 VNAVTREGFKIAHDISAYSFVAMAKEC-RAML-NPNSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAVSAGPIRTLAASG 199
                 666677779999999****99999995.6667.68888999999999********************************************977665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.8e-06     0.011       4      92 ..      10      95 ..       8     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-06
                EEETTTSHHHHH..HHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----- CS
          KR  4 litGGlGgLGle..larwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvl 92
                litG + +L  +  +a+ + ++ga+ l+++  + +     k +++e+++  g ++ v+++Dv++ +++++l++e+ ++ p+  G +h+ g++
  EHU00725.1 10 LITGVASKLSIAygIAQAMHKQGAE-LAFTYQNDK----LKGRVEEFAKDlGSDI-VLPCDVAEDESIQSLFAELAKTWPKFDGFVHSIGFA 95
                7888887765442278999999985.666666633....3445555555426676.689*****************999********97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2124.77
//
Query:       EHU00726.1  [L=369]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2685.03
//
Query:       EHU00727.1  [L=265]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-23   82.7   7.8    2.7e-23   82.4   7.8    1.1  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.041   13.8   0.0    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   7.8     3e-27   2.7e-23       3     208 ..      55     263 ..      53     264 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 3e-27
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEEEEEETTS..GGGG CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplvlvaspdh..pLar 92 
                     g  g+Lr+g++p  ++  l++ll++ + ryP+++ ++ + + ++ll++l+++++D++i + +    ++ +++a  La+  + +v +p+h  +L +
      EHU00727.1  55 GVNGTLRLGVVPQ-CSVSLAQLLKAVQVRYPQLDYRIAVLSADQLLEALNSHTVDVGIGFFEMatlRELHFQAALLADRGVEAVFHPGHfqHLGE 148
                     789********99.89999*******************************************9999999999*****************554555 PP

                     SSSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEE CS
  LysR_substrate  93 gepvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvy 187
                      e+++l  La++pl l e+   +r++l+ alre  l prv++e+ s+  ll++ + GlG+ + pr  + ++  +g  + +p+  p + r+ +lv+
      EHU00727.1 149 VESLDLPTLARQPLCLAEPTRYFRRYLDMALREMSLMPRVVVESASIMQLLQCTQVGLGVLVSPRGHLLPASLHGLEQ-RPVIMPKMARQAALVV 242
                     9999******************************************************************99996666.*****99999999999 PP

                     ETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflreal 208
                      +  +++p++++f d +r++l
      EHU00727.1 243 AEPGRATPLAQHFYDEARSHL 263
                     99999***********99886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.6e-06     0.041      32      59 ..       1      28 [.       1      29 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-06
                HHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1 32 rqikrLEeelgvpLfeRtgrglrLTeaG 59
                +++k+LE+elg  L++R+++ +  T++G
  EHU00727.1  1 MRLKNLERELGLSLINRSNNFAGFTPEG 28
                689**************888899**999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2047.72
//
Query:       EHU00728.1  [L=45]
Description: hypothetical protein CKS_2808 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 376.83
//
Query:       EHU00729.1  [L=528]
Description: PTS system maltose and glucose-specific IICB components [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-75  253.5  35.5    2.4e-75  253.5  35.5    1.4  2  PTS_EIIC  Phosphotransferase system, EIIC
    1.9e-11   43.2   0.2    3.4e-11   42.4   0.2    1.4  1  PTS_EIIB  phosphotransferase system, EIIB
  ------ inclusion threshold ------
       0.21   12.2   3.3          5    7.8   0.1    2.6  2  DUF2563   Protein of unknown function (DUF2563)


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.5  35.5   4.1e-79   2.4e-75       1     324 []      12     368 ..      12     368 .. 0.95
   2 ?   -3.8   0.7      0.84     5e+03     183     211 ..     383     414 ..     371     437 .. 0.52

  Alignments for each domain:
  == domain 1  score: 253.5 bits;  conditional E-value: 4.1e-79
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 ++++m+pi ++ a+Gi+lgl+ ++++++++g +  ++ ++++ +  ++ ++ +a fanLpl+fa++ a+glak +k++a++a++ig++a+n+   i++ 
  EHU00729.1  12 GKALMMPISVIAAAGIFLGLAAAMQNPAVTGEAF-AQMQVAQLIIGFIRKVAGALFANLPLFFAVASAIGLAKAEKPTAAFAAVIGYIAMNV--GINAT 107
                 689*******************999999999776.67788888888**********************************************..99999 PP

    PTS_EIIC 100 llaagala......................sakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglv 176
                 l a+g++a                      ++++ +lgi+t +++v+g++++gll+++l+n+f+     +LP ++ ff g rfvpi+t++ vl +vg++
  EHU00729.1 108 LAAKGITAatttpqalqqagldqttammtsAEYIQMLGIFTYNMSVLGGVVAGLLTVMLHNRFYT---QQLPTAISFFGGRRFVPIVTVV-VLPLVGVL 202
                 999999999*********************99*********************************...**********************.99999*** PP

    PTS_EIIC 177 llliwpaiqgglnalglllggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlyg......agk..............eaahilt 255
                 l liwp +  g+ + g ++g+sg + g++++g++erllip+GlHh+++ +  ft++gg + + +q+l+g      a                 +++  +
  EHU00729.1 203 LALIWPTLGEGIAWVGQMIGHSGQY-GAFLLGAAERLLIPTGLHHILNETVRFTPIGGMAVVDGQTLVGalnifnA-SlthpglipdatlrtATQFLAQ 299
                 **************99999999966.*******************************************6666650.1555677777788888999999 PP

    PTS_EIIC 256 gefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 g+ + +mfG+p+a+la+y++a +e k ++k l++++alt+f +GItepleF f+fv+++l++++a+l+g
  EHU00729.1 300 GKIPVMMFGLPAAALAIYHTARPEHKQRVKALVLAGALTSFTTGITEPLEFCFIFVSPVLYVLHAFLTG 368
                 99999**************************************************************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.84
    PTS_EIIC 183 aiqgglnalgll...lggsgsllgvlifgfle 211
                  +qgg++ l+++    g+++ +  +l++g+++
  EHU00729.1 383 NVQGGIIDLVVFgvlGGSKTHWWWTLVLGVIY 414
                 34444444332222133333344444444444 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.2   5.8e-15   3.4e-11       3      33 ..     455     485 ..     453     485 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 5.8e-15
                 HHHHH-.GGGEEEEEE-SSEEEEEES-GGGS CS
    PTS_EIIB   3 IldalGGkdNIesvthCaTRLRltlkDaskv 33 
                 I+ +lGG+ NIe++++C TRLR+ +kD++ v
  EHU00729.1 455 IISGLGGAANIEDIDCCFTRLRVRVKDMKEV 485
                 99*************************9865 PP

>> DUF2563  Protein of unknown function (DUF2563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.8     0.014        83      35      87 ..      62     116 ..      34     130 .. 0.72
   2 ?    7.8   0.1   0.00083         5      27      64 ..     295     332 ..     288     344 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.014
     DUF2563  35 lsGmfGdfaaadafhdavvaahaqhvrnlqahreal..iavGekarhaakGftdm 87 
                 +  +f +++   a  +a++ a+a++     a       + vG +a +aakG t+ 
  EHU00729.1  62 AGALFANLPLFFAVASAIGLAKAEKPTAAFAAVIGYiaMNVGINATLAAKGITAA 116
                 55567777777777777777777776665555444311579***********986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00083
     DUF2563  27 dqlarGpllsGmfGdfaaadafhdavvaahaqhvrnlq 64 
                 + la+G +   mfG  aaa a +++    h+q+v+ l 
  EHU00729.1 295 QFLAQGKIPVMMFGLPAAALAIYHTARPEHKQRVKALV 332
                 5699******************9999********9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.35
# Mc/sec: 4463.80
//
Query:       EHU00730.1  [L=768]
Description: putative formate dehydrogenase oxidoreductase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-23   81.7   0.0      5e-22   78.5   0.0    2.0  1  Molybdopterin    Molybdopterin oxidoreductase
    8.1e-12   45.2   0.0    1.5e-11   44.3   0.0    1.4  1  Molydop_binding  Molydopterin dinucleotide binding domain
  ------ inclusion threshold ------
      0.062   13.5   0.0       0.15   12.3   0.0    1.6  1  DUF3539          Protein of unknown function (DUF3539)
       0.08   13.1   0.0       0.22   11.7   0.0    1.7  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   1.1e-25     5e-22       1     376 [.     110     495 ..     110     519 .. 0.77

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.1e-25
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH...CHHC CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq...qtig 93 
                    Rl++P+    +r+ + ++++sWd+A++lia+ +k+     +pd++ ++ sg++  +e+  +++ + + lg +n+   ++ ++   as +   + ig
     EHU00730.1 110 RLTHPLRY--NRETDHYEPISWDDAYALIAQHIKA---MDNPDQMELYTSGRAS-NEASWLYQLFGRMLGTNNFPDCSNMCHE--ASGAglkRSIG 197
                    88999866..7889*********************...7777788888888887.6666656666666666544333333333..44334445555 PP

                    CCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-H..................CGGGCSEEEEEHTTTHHH CS
  Molybdopterin  94 sdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryae..................llkfadewlaikpgtdaa 171
                     +       +  l d++++d+i+++G N+ +++p +  + ++ a   +ak++ + +  +                     +  +++  ++ g d a
     EHU00730.1 198 VG-----KGTIRLDDFDHADAIFVFGQNPGTNHPRM-LHSLRHAADHGAKIVTFNTLRERglerfadpqkpleivtskAGTISSAYYQPHLGGDMA 287
                    54.....4578888**********************.77777777777999998887777777777888888888877456667777777777777 PP

                    HHHHHHHHHHHCCCC..........TCHHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHH CS
  Molybdopterin 172 lalamghvilqelkv..........dkeflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyr 257
                     + +m +++l+              d++fl+  t g e + + ++ t   +  ++++   +++re a+ + +++   +  + +g+++++++ +++r
     EHU00730.1 288 AVRGMVKALLETHRAriaagesglfDQAFLNAKTHGVEAYFDAVDNTDWMQIVAQSGLTEAQIREAAAIYQSADR-VICTWAMGITQHKHSVDTVR 382
                    766666666654333333344455599999999999999999999999998888888888888888877777776.******************** PP

                    HHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT.HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHH CS
  Molybdopterin 258 avinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke.ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevd 352
                     + nL ll g+ g++g+g   ++G  +++g  ++++    ++++k +       f  e p   g+    + ve+ n++ + ++kvl  lg n   +
     EHU00730.1 383 EITNLQLLFGQLGKKGAGLCPVRGHSNVQG--NRTMGI-DEKPAKPFLDaLGQHFNFEPPRAAGH----NTVEALNAMLRDEIKVLIALGGNLAAA 471
                    ***********************9666666..444444.36666666666888999999999999....555666777778*************** PP

                    STTSCCCHCHHHCSSEEEEEESCS CS
  Molybdopterin 353 hadenevekalekldlvvvldgrl 376
                    ++d  ++e+al ++ l v +   l
     EHU00730.1 472 APDSPRTEEALSRCGLTVHISTKL 495
                    **************9998776655 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.4e-15   1.5e-11       1     111 []     645     753 ..     645     754 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.4e-15
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTE.EEEEEE....EEESSB-TTEEEEESSHCC.....S CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrG.svevra....kvtervrpGvvfmpfgwweagekgg 88 
                      ++L t rs+dq++++++  ++++++  ++ evv inp+d+aalG ++G++V +e+ +   v+ r+     v +++++G +++++++        
       EHU00730.1 645 FTLQTLRSHDQYNTTIYGLDDRYRGVYGQrEVVFINPDDMAALGFSEGQNVDIETLWNdGVTRRVsgfkLVPYNIPRGNLAAYYPE-------- 730
                      6899****************************************************998777777777789999*********999........ PP

                      -GHCTS.--SCSTTT--CSTT-EE CS
  Molydop_binding  89 naNalt.ddatdplsgtpefksva 111
                       +N l+   +  ++sgtp+ ksv+
       EHU00730.1 731 -TNPLVpLNSYGDISGTPTSKSVP 753
                      .88999999999999999999875 PP

>> DUF3539  Protein of unknown function (DUF3539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05      0.15      26      75 ..      94     152 ..      86     159 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
                 EEESSEE--EEEEEE-S.........SSEEEEEE-HHHHHHHHHHHHHHHHHHSHHHHH CS
     DUF3539  26 fttLYaqrlfFlvtlke.........eelkfepisrsdArllvenrlrllrregeeeel 75 
                  ttLYaq  +Fl ++ +         e  ++epis +dA  l+ ++++++++  ++e +
  EHU00730.1  94 VTTLYAQSDYFLEYQGRlthplrynrETDHYEPISWDDAYALIAQHIKAMDNPDQMELY 152
                 59*********9998888889999867789*******************9988877655 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     5e-05      0.22      14      38 ..     674     698 ..     669     705 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                 TTEEEE-HHHHHHHTS-TTSEEEEE CS
     CDC48_N  14 rgivridpedmeelglepgdvveie 38 
                 r +v i+p+dm++lg+++g+ v+ie
  EHU00730.1 674 REVVFINPDDMAALGFSEGQNVDIE 698
                 899*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 5146.48
//
Query:       EHU00731.1  [L=643]
Description: ribonuclease II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-86  291.1   0.0    1.4e-86  290.8   0.0    1.1  1  RNB       RNB domain
      1e-19   70.0   0.4    2.4e-19   68.8   0.1    1.9  2  OB_RNB    Ribonuclease B OB domain
    3.5e-11   43.3   1.8    3.9e-09   36.7   0.4    2.5  2  S1        S1 RNA binding domain
    1.4e-10   41.2   0.0      1e-07   32.0   0.0    2.9  3  CSD2      Cold shock domain
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.028   14.7   0.0    1.7  1  PilZ      PilZ domain


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.8   0.0   3.9e-90   1.4e-86       1     325 [.     189     515 ..     189     516 .. 0.96

  Alignments for each domain:
  == domain 1  score: 290.8 bits;  conditional E-value: 3.9e-90
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlid 99 
                 R+dl++l ++tId+++++d+DdA+++e l+++  +l+V+IAD++ yv egs+ldk a++ra++ yLp+ ++pMLP+els+d+cSL+p+  r+ l ++++
  EHU00731.1 189 REDLTALDFVTIDSASTEDMDDALYVEALEDNALRLTVAIADPTAYVAEGSELDKLAAQRAFTNYLPGFNIPMLPRELSDDVCSLRPDVRRPVLACRVT 287
                 99************************************************************************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 100 vdekgevlsveiylsvIkskarltydevqdlleqkdeke.ekk.taedLellyelakalrkkRlkkgalefdspeikllldedkgnrielkveeetkah 196
                 v ++g++ +v++  ++I+ska+l ydev+d+le+  e + +++ +a++++ll++l+    ++R++++ +  d p +++ll e kg+++++  e ++ a+
  EHU00731.1 288 VAQDGSLSDVHFFAAWIESKAKLVYDEVSDWLENSGEWQpQNDaIANQIRLLHQLCLSRGEWRQAHELVFKDRPAYRFLLGE-KGEVLDIVAEPRRIAN 385
                 ********************************999988876558*******************999777779**********.**************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 197 slveelmllANelvArflseleipailriheepsnekledliklakklglk.lednsskknlqeslekleeeeaeqllselllrllkeakyssepvgHf 294
                 ++vee m+lAN ++A++l  +   +i+++h  +++ + e+ + +++++g+   ++++++ +  ++l++  + +  q+l+  ++r+ + a++ +ep +Hf
  EHU00731.1 386 RIVEEAMILANICAAEVLRDKLGFGIYNVHAGFDSANAEQAAAVLATHGITaDPSAITTLDGFRVLRRELDAQPTQFLDSRIRRFQTYAEITTEPGPHF 484
                 ***************************************************96666666677777777767777************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 295 gLaleeYthfTSPirRYpDlvvhrllkalla 325
                 gL+le Y+++TSPir++ D+++hrllka+++
  EHU00731.1 485 GLGLEAYATWTSPIRKFGDMINHRLLKAIVR 515
                 ***************************9976 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   6.7e-23   2.4e-19       1      57 [.      24      80 ..      24      81 .. 0.97
   2 ?   -3.3   0.0       2.1   7.5e+03      36      48 ..     524     535 ..     523     541 .. 0.69

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 6.7e-23
                EEEEE-SSS-EEEEECT.TEEEEE-HHHHTTS-TT-EEEEEEEE.SSSEEEEEEEEEE CS
      OB_RNB  1 GtvrahkkGFGFlipdegkeDifippeqmkkamhGDrVlvritk.gdrrgrregrvvr 57
                G+v++++kGFGFl++d  ++++fipp qmkk+mhGDr+++ i++ +dr++++++++v+
  EHU00731.1 24 GVVKGTEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIIAVIHTdKDRESAEPETLVE 80
                89**************7.***********************************99997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
                 -EEEEEEEESSSE CS
      OB_RNB  36 DrVlvritkgdrr 48 
                 D V+v++++ +rr
  EHU00731.1 524 DAVTVTMSE-RRR 535
                 899999988.333 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0071        25       8      50 ..      22      64 ..      20      71 .. 0.83
   2 !   36.7   0.4   1.1e-12   3.9e-09       5      75 .]     560     635 ..     557     638 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0071
                EEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCE CS
          S1  8 veGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevl 50
                 eG+V+  +kg  f e+++  + f+p  +++  ++++ +  v+
  EHU00731.1 22 AEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIIAVI 64
                59********999*****************9886666655555 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.1e-12
                 TCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS....CEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   5 gevveGeVtsvtkgGafVelg.ngvegfvpaselsrd....arvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +  +++e++++++gG++V+l+ ng+ +f+pa  l++     ++ +++++v  +G+ v+ + + +d++ ++++++++
  EHU00731.1 560 DRKFSAEIIDISRGGMRVRLLeNGAVAFIPAPFLHSVrdelVCSQESGTVQIKGEVVYRVTDVIDVTIAEVRMETR 635
                 67899************************************88888888888888888888888888888877764 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0041        15      10      41 ..      41      72 ..      35      83 .. 0.78
   2 !   32.0   0.0   2.8e-11     1e-07       2      74 .]      99     175 ..      99     175 .. 0.86
   3 ?   -3.6   0.0       3.6   1.3e+04      23      36 ..     520     533 ..     513     540 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0041
        CSD2 10 kqdifipkeklkgakdGdkVvveiteypdkkn 41
                ++  fip+ + k++ +Gd +++ i+  +d+++
  EHU00731.1 41 QKSYFIPPPQMKKVMHGDRIIAVIHTDKDRES 72
                45669******************999776543 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 2.8e-11
        CSD2   2 Vvpddkrlkqdif.ip.keklkgakdGdkVvveiteyp..dkknpeGevievLGkkgdpgveilsilakhglpeeFP 74 
                 +vpd++ lk+ i   p +  ++++++Gd++v+e+ ++p  +++ + +e +e +  ++d+ + ++++l +h+l+++ P
  EHU00731.1  99 IVPDHPLLKEAIQcRPvRGLTHDFQQGDWAVAEMRRHPlkGDRGFYAELTEFIVSADDHLAPWWVTLSRHNLERQAP 175
                 69999999999994443345569***************743466*****************************9887 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.6
        CSD2  23 akdGdkVvveitey 36 
                 a+ +d V v + e+
  EHU00731.1 520 ARPDDAVTVTMSER 533
                 78899999999886 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.8e-06     0.028      20      87 ..     558     628 ..     537     640 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.8e-06
                 ETTEEEEEEEEEEESSEEEEEES........T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTEEEEEEEE CS
        PilZ  20 adegelkgrliDiSlgGlairlp........deelalgdrvelklpldkdqelslpgrVvrvkpeedgerlGveFl 87 
                 a + ++++ +iDiS+gG+++rl         ++++    r el    +++++++++g+Vv +  +     + v + 
  EHU00731.1 558 ATDRKFSAEIIDISRGGMRVRLLengavafiPAPFLHSVRDELVCS-QESGTVQIKGEVVYRVTD----VIDVTIA 628
                 568899****************989877764333333333344444.789999999999998888....5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4427.47
//
Query:       EHU00732.1  [L=688]
Description: putative carbon starvation protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-170  566.7  25.6     2e-170  566.7  25.6    2.3  3  CstA      Carbon starvation protein CstA
    9.4e-33  113.0   8.6    9.4e-33  113.0   8.6    3.7  4  CstA_5TM  5TM C-terminal transporter carbon starvation CstA
  ------ inclusion threshold ------
      0.012   15.0   1.7      0.012   15.0   1.7    2.5  2  DUF2417   Region of unknown function (DUF2417)
        6.4    6.9  14.1        9.8    6.3   0.1    4.4  4  DUF3278   Protein of unknown function (DUF3278)


Domain annotation for each model (and alignments):
>> CstA  Carbon starvation protein CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.7  25.6  4.4e-174    2e-170       1     375 []      32     409 ..      32     409 .. 0.99
   2 ?   -4.7   3.1       1.8   8.2e+03     164     164 ..     549     549 ..     417     601 .. 0.57
   3 ?   -1.1   0.4      0.15   6.7e+02     129     150 ..     642     663 ..     621     681 .. 0.49

  Alignments for each domain:
  == domain 1  score: 566.7 bits;  conditional E-value: 4.4e-174
        CstA   1 mnavllvvvavvvfviayrfYgkfiakkvlklddkraTPaerledgkdyvptnklvlfghhFasiagagPlvGpvlAaqfGylPgllWilvGavfagav 99 
                 +nav+lvv+av+++ iayrfY+ fia+++++ldd+r TPaerl+dg dyvptnk+vlfghhFa+iagagPlvGp+lAaq+G+lPg++WilvG+++agav
  EHU00732.1  32 VNAVWLVVAAVACYSIAYRFYSLFIARNIFELDDHRLTPAERLSDGLDYVPTNKWVLFGHHFAAIAGAGPLVGPILAAQMGFLPGTIWILVGVMLAGAV 130
                 79************************************************************************************************* PP

        CstA 100 hDfvvlvasvrrkgkslgelakkelgkvakllallaillililvlavlalvvvkalaespaavfsviltipialllGvllrklrkg.vleasvigvvll 197
                 +Df+vl++s+rr+g+slge+a++elg +a+++++l +l ++i++l++lalvvvkala+sp++ f++++tipial++G+++r+lr+g ++e+s+ig+vl+
  EHU00732.1 131 QDFLVLFISTRRDGRSLGEMARQELGAFAGVITMLGALGVMIIILSALALVVVKALANSPWGLFTIAATIPIALFMGIYMRFLRPGkIAEVSLIGFVLM 229
                 **************************************************************************************9************ PP

        CstA 198 llavvvgsev.eea.laelltlsketlaivlivYvfvAsvlPvwlllaPrdYlstflligtivllalgilvvapelklpavtefvdgegpvfagslfPl 294
                 ++a+++g  v +++ ++  +tl+ + l++vl++Y+f+AsvlPvwlllaPrdYlstfl+ig+iv+la+gi++++pe+k+pavt+f+dg+gpvf+g+lfP+
  EHU00732.1 230 MAAIIYGGDVaQHPyWGPFFTLKGTSLTWVLVIYGFIASVLPVWLLLAPRDYLSTFLKIGVIVGLAVGIVFAMPEMKMPAVTRFIDGTGPVFSGALFPF 328
                 **********88889************************************************************************************ PP

        CstA 295 lfitiACGaiSGFHslvssgttskllekesdarlvgygamllEslvailalvaaavlepaayfalnsaaavlgttveaaaa 375
                 lfitiACGaiSGFH+lvssgtt+kl+e+es++r++gygaml+Es+vai+al++a+vl+p++yfa+n++aa++gttve+aa+
  EHU00732.1 329 LFITIACGAISGFHALVSSGTTPKLVERESHIRFIGYGAMLMESFVAIMALICASVLDPGVYFAMNAPAALIGTTVENAAQ 409
                 ****************************************************************************99885 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 1.8
        CstA 164 s 164
                  
  EHU00732.1 549 G 549
                 1 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.15
        CstA 129 kllallaillililvlavlalv 150
                  +l  +++l+ + +++a++ ++
  EHU00732.1 642 AALCGFFMLVAVTMLIAAFFVI 663
                 2333444445555555555332 PP

>> CstA_5TM  5TM C-terminal transporter carbon starvation CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         2   9.2e+03      48      60 ..      32      44 ..      13      59 .. 0.51
   2 ?   -1.6   4.1      0.75   3.4e+03      15     110 ..     137     230 ..     116     235 .. 0.60
   3 !  113.0   8.6   2.1e-36   9.4e-33       1     116 []     463     591 ..     463     591 .. 0.88
   4 ?   -1.7   0.1      0.84   3.7e+03      79      92 ..     649     662 ..     635     675 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
    CstA_5TM 48 vatliavalavll 60
                v+++  v++av++
  EHU00732.1 32 VNAVWLVVAAVAC 44
                3333333333333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.75
    CstA_5TM  15 falTtlDtatRlaRyilqellgelkkkaltnky.vatliavalavllllwggintlWplFGaaNQlLAalaLlvvtvwllktgrkalvtliPmvfml 110
                 f+ T  D +  l+ ++ qel + +   ++   + v ++i +ala+++++    n+ W lF +a  +  al + + + +l + g+ a v li  v+m+
  EHU00732.1 137 FISTRRD-GRSLGEMARQELGAFAGVITMLGALgVMIIILSALALVVVKAL-ANSPWGLFTIAATIPIALFMGIYMRFL-RPGKIAEVSLIGFVLMM 230
                 5555444.4456666667766655544445555566666666666665544.788888888876554444333333333.33666666666666665 PP

  == domain 3  score: 113.0 bits;  conditional E-value: 2.1e-36
    CstA_5TM   1 aavaytfailfvalfalTtlDtatRlaRyilqellgelkkkaltn.kyvatliavalavllllwg............gintlWplFGaaNQlLAalaLl 86 
                 +a++y+failf+alf+lT++D++tR  R+i+q+l+g++  + ++n +++++l+ + +av+   wg            gintlWplFG+ NQ+LA++aL+
  EHU00732.1 463 MAFWYHFAILFEALFILTAVDAGTRACRFIVQDLVGTVVPSMANNrSWLGNLAGTTVAVAG--WGffvyqgvidplgGINTLWPLFGIGNQMLASMALI 559
                 689*********************************9994444442668888888888887..666777779999999********************* PP

    CstA_5TM  87 vvtvwllktgr..kalvtliPmvfmlvvtlta 116
                 ++tv+l+k+++  +a+vt++P+++++++++ta
  EHU00732.1 560 LGTVVLFKMKKqrYAWVTILPTIWLFITSMTA 591
                 *******555558****************997 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.84
    CstA_5TM  79 lLAalaLlvvtvwl 92 
                 +L a+++l++++++
  EHU00732.1 649 MLVAVTMLIAAFFV 662
                 34444444444444 PP

>> DUF2417  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.26   1.2e+03     186     216 ..     456     486 ..     452     506 .. 0.84
   2 ?   15.0   1.7   2.7e-06     0.012     121     212 ..     560     660 ..     546     673 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.26
     DUF2417 186 ilvrniikllllvvlilltltllLralDasl 216
                 ++ +  ++++   ++il+ +  +L+a+Da +
  EHU00732.1 456 VVNSRAMMAFWYHFAILFEALFILTAVDAGT 486
                 556677888999999*************986 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.7e-06
     DUF2417 121 llllllvkytReregfvgiasvlWaaltfllgilldryvekgkkeeeerltgreet.........rhtlkewlsilvrniikllllvvlilltltllLr 210
                 l  ++l k  ++r  +v+i+  +W ++t++ ++++    ek    +  + ++ ++           +t+  +  i+++n i+++l+ +++l+ +t+l+ 
  EHU00732.1 560 LGTVVLFKMKKQRYAWVTILPTIWLFITSMTAAWQKIFHEKPSIGFLAQANKFRKGldegviiapAKTVADMHTIVFSNQINAALCGFFMLVAVTMLIA 658
                 44577888999**************************99999988888876666557789************************************998 PP

     DUF2417 211 al 212
                 a+
  EHU00732.1 659 AF 660
                 76 PP

>> DUF3278  Protein of unknown function (DUF3278)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0022       9.8      21      84 ..     146     210 ..     144     216 .. 0.73
   2 ?    5.4   0.4    0.0042        19      31      80 ..     454     503 ..     450     506 .. 0.88
   3 ?    0.3   0.6      0.15   6.8e+02      40      81 ..     552     591 ..     548     603 .. 0.69
   4 ?    0.9   0.1     0.097   4.3e+02      45      85 ..     626     663 ..     618     688 .] 0.51

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
     DUF3278  21 plDeykrqeinrignnafillwl..yllilslvalllakktpeselilglvltnlllvvlvsglYi 84 
                  l e +rqe+++ +  + +l +l  +++ils++al+++k+  +s     + + + +   l  g+Y+
  EHU00732.1 146 SLGEMARQELGAFAGVITMLGALgvMIIILSALALVVVKALANSPWG-LFTIAATIPIALFMGIYM 210
                 578999*************9665116677899999999998886554.555555555556666776 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0042
     DUF3278  31 nrignnafillwlyllilslvalllakktpeselilglvltnlllvvlvs 80 
                   + n  +++ ++y  ++ + al++  + +    +  +++  l+ +v+ s
  EHU00732.1 454 TEVVNSRAMMAFWYHFAILFEALFILTAVDAGTRACRFIVQDLVGTVVPS 503
                 5688999***********************99999999999988777655 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.15
     DUF3278  40 llwlyllilslvalllakktpeselilglvltnlllvvlvsg 81 
                 +l+++ lil  v+l+ +   ++   ++ ++ t+ l+ + ++ 
  EHU00732.1 552 MLASMALILGTVVLFKM--KKQRYAWVTILPTIWLFITSMTA 591
                 56667777777777766..44445676777788888777765 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.097
     DUF3278  45 llilslvalllakktpeselilglvltnlllvvlvsglYil 85 
                 + ++ + +++++++++  +l+ g+ +++  +++l++  +++
  EHU00732.1 626 KTVADMHTIVFSNQINA-ALC-GFFMLVA-VTMLIAAFFVI 663
                 55666666666655554.333.2222222.12233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4753.97
//
Query:       EHU00733.1  [L=96]
Description: hypothetical protein CKS_2803 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-24   86.1   1.1    1.7e-24   85.6   1.1    1.2  1  Sel_put     Selenoprotein, putative
  ------ inclusion threshold ------
        3.3    7.4   4.9          5    6.8   4.9    1.2  1  Nup54_57_C  NUP57/Nup54 C-terminal domain


Domain annotation for each model (and alignments):
>> Sel_put  Selenoprotein, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   1.1   1.9e-28   1.7e-24       1      62 []      32      96 .]      32      96 .] 0.97

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.9e-28
     Sel_put  1 klrralrrvrqylrllvGepdYerYvehmrrhHpdkppmsereFfrerqdaryg.npggv.RC.C 62
                ++r++++ ++q +rl+vG++dY++Y++hmr++Hpd ppmser+F+r+++dar+  ++g++ +C C
  EHU00733.1 32 RWRAFWQGLQQSFRLMVGVQDYQKYLQHMRQQHPDLPPMSERDFHRYCLDARFPsQAGKLgKCpC 96
                5899**************************************************99999****88 PP

>> Nup54_57_C  NUP57/Nup54 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.9   0.00055         5       9      21 ..      51      63 ..      50      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00055
  Nup54_57_C  9 eDYekQLqHLkKE 21
                +DY+k LqH++++
  EHU00733.1 51 QDYQKYLQHMRQQ 63
                8*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 739.36
//
Query:       EHU00734.1  [L=661]
Description: modulator of Rnase II stability [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-67  226.6   0.2    5.3e-67  225.8   0.2    1.4  1  EAL       EAL domain
    2.4e-45  154.2   0.0    4.8e-45  153.2   0.0    1.5  1  GGDEF     Diguanylate cyclase, GGDEF domain
    2.9e-08   33.9   0.2    7.6e-08   32.5   0.2    1.7  1  PAS_9     PAS domain
    2.9e-06   27.2   0.2      2e-05   24.6   0.0    2.5  3  PAS       PAS fold
     0.0003   21.0   0.0     0.0019   18.4   0.0    2.4  3  PAS_4     PAS fold
     0.0014   19.2   0.0      0.014   16.0   0.1    2.5  2  PAS_10    PAS domain
  ------ inclusion threshold ------
      0.048   13.9   0.2       0.18   12.0   0.2    2.1  1  GGDEF_2   GGDEF-like domain
      0.052   13.6   0.1        4.3    7.5   0.0    2.6  2  PAS_8     PAS domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.2   2.4e-70   5.3e-67       3     238 .]     412     644 ..     410     644 .. 0.96

  Alignments for each domain:
  == domain 1  score: 225.8 bits;  conditional E-value: 2.4e-70
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 +lr+ale+++l ++yQP v  ++gkv  +eal+rw++p++gl+sp++f+p+ae++gl+  l rwv+ ++l+++ +++ +  d ++++++n+s+++l+d+
  EHU00734.1 412 NLRKALEQDHLLVHYQPKV-DTDGKVRSAEALVRWHSPERGLVSPADFIPYAEDSGLIVPLGRWVMLNVLKQIIAWRqQ--DIHLRVAVNVSARQLMDQ 507
                 699****************.6*******************************************************955..667777************ PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +++++l+++l  +g+ +s + +e+tes l+++++++  ++++++++lG+++ lddfgtgyssls+lar+p+++iKld+s+++++++ + +q+lv+a++a
  EHU00734.1 508 SIYSDLKQALTDAGLTESPIDIELTESCLIENEAEAL-KLMHKFQELGAQVHLDDFGTGYSSLSQLARVPINAIKLDQSFIRNVNKRPVSQSLVRAIVA 605
                 **********888888888********9999999998.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 +ak+l+++v+aeg+et ++  ++ + g+d  QGy+++kp
  EHU00734.1 606 VAKALDLQVIAEGIETADEEAFVLKNGVDGRQGYFYAKP 644
                 **************************************9 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   2.1e-48   4.8e-45       1     160 [.     237     390 ..     237     391 .. 0.97

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 2.1e-48
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a++D +TgLpNR ++ ++++q+l+ra  e+++++v++ldl+nFkk+nd+yGh +GD++Lq+v+ ++ s+l+k+++++RlggdeF++l ++ts+   a+l
  EHU00734.1 237 ANTDGITGLPNRHAIHQQISQALERA--EGSETGVVYLDLNNFKKVNDAYGHMFGDQLLQAVSLAILSCLSKNQTLGRLGGDEFVVLAEQTSQ---AAL 330
                 789***********************..469*************************************************************6...699 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 + ++ r+l++l++p++++ +e+y  +siGia+a p +ged e l+++Ad+a+y aK+++r 
  EHU00734.1 331 EAMATRILDRLRQPFRIGLIEVYSGCSIGIAIA-PLHGEDRECLIRNADTAMYHAKENNRG 390
                 *********************************.6**********************9986 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   3.4e-11   7.6e-08       3     104 .]     123     225 ..     121     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.4e-11
       PAS_9   3 gilidnpdgrilyaNeaalrllGyspeevlgksitdlf...vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdd.dgelvgiiv 97 
                  i+i +  g+i ++N+  ++ +G  +++v+g+++++lf    +++ ++++++ ++++g    +eve  + + +g++++ l++   v+++ +++ +++i+
  EHU00734.1 123 VIVILDQRGNIQRFNRLSEEYTGLYEQDVIGRNVFQLFmtkQEAAASRRNIAGFFRDGN--SYEVERWIKTMKGQRLF-LFRNKFVHSGsGKNEIFLIC 218
                 467788*****************999************999999999999999999999..*************7777.666666678857777779** PP

       PAS_9  98 ilrDite 104
                   +Dite
  EHU00734.1 219 YGTDITE 225
                 ******8 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.8e-09     2e-05       4     113 .]     114     223 ..     111     223 .. 0.82
   2 ?   -2.6   0.0       2.3   5.2e+03      25      37 ..     279     291 ..     249     302 .. 0.69
   3 ?   -1.6   0.0       1.2   2.6e+03      59      90 ..     410     440 ..     396     444 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.8e-09
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.HHHHHHHHHHHHTT-ECCCCEEEEC.TTSSEEEEEEEEEEEEETT CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda.elaelleqlleqgeesrageisfkl.rdgrpihlevraspvrdag 100
                 +++++ + + i+++D +g+i  +N+  ee +Gl +++v+g++++ l+ ++++a   ++ +    ++g++ + +e+++k+ + +r + ++   ++ ++++
  EHU00734.1 114 EQVVSEANSVIVILDQRGNIQRFNRLSEEYTGLYEQDVIGRNVFQLFMTKQEAaASRRNIAGFFRDGNSYE-VERWIKTmKGQRLFLFRNKFVHSGSGK 211
                 5678889999*************************************999988777777777777777765.577788867777777788888887777 PP

                 EEEEEEEEEEEES CS
         PAS 101 geilgflgvlrdi 113
                  ei  +++ + di
  EHU00734.1 212 NEI-FLICYGTDI 223
                 776.777766665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                 EECHHHHHHHSST CS
         PAS  25 yvNaaaeellGls 37 
                  vN+a+  ++G +
  EHU00734.1 279 KVNDAYGHMFGDQ 291
                 4788888888876 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHTT-ECCCCEEEECTTSSEEEEE CS
         PAS  59 aelleqlleqgeesrageisfklrdgrpihle 90 
                    l+++leq +   +++ ++++ dg+++ +e
  EHU00734.1 410 DTNLRKALEQDHLLVHYQPKVDT-DGKVRSAE 440
                 55566666666666666666666.66666555 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.7e-07    0.0019       5     110 .]     121     228 ..     117     228 .. 0.90
   2 ?   -2.5   0.0       2.7     6e+03      49      72 ..     248     271 ..     243     276 .. 0.76
   3 ?   -2.7   0.0       3.2   7.1e+03      77      96 ..     418     437 ..     409     443 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.7e-07
       PAS_4   5 pdalavldpdgrvlyaNaaaaelfgappeellGktlaellpee.daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGe.vigvlvi 101
                 + ++++ld  g++++ N+ ++e+ g+  ++++G+ +++l+ +   aa+ +r+++   + + ++e +   ++ +++r +++r   ++  sG+  i+++++
  EHU00734.1 121 NSVIVILDQRGNIQRFNRLSEEYTGLYEQDVIGRNVFQLFMTKqEAAASRRNIAGFFRDGNSYEVERWIKTMKGQRLFLFRNKFVHSGSGKnEIFLICY 219
                 6678999******************************9555555***************************777777777777777899999******* PP

       PAS_4 102 srDiTerrr 110
                 ++DiTe+rr
  EHU00734.1 220 GTDITEERR 228
                 ******997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.7
       PAS_4  49 aarleralrrvlegeepiefleel 72 
                 ++++++++ ++le  e  e+  ++
  EHU00734.1 248 RHAIHQQISQALERAEGSETGVVY 271
                 678999999999998877766555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.2
       PAS_4  77 eerhyelrllPlrdesGevi 96 
                 e+ h+++++ P  d++G+v+
  EHU00734.1 418 EQDHLLVHYQPKVDTDGKVR 437
                 56677777777777777764 PP

>> PAS_10  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.2   2.7e+03      68      91 ..      38      62 ..      26      65 .. 0.78
   2 !   16.0   0.1   6.4e-06     0.014       7      89 ..     119     206 ..     114     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
      PAS_10 68 devevvvp.kngkwvlvrylpyrde 91
                 + +v vp ++g++ l+r +p+ + 
  EHU00734.1 38 SNTSVAVPlTPGQCSLLRAMPVITS 62
                45566677889**********9885 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.4e-06
      PAS_10   7 stpieltflDdnlqirrFtpaakklfklipadv.Grpladi..hpkkavknveeviealrtgekdevevvvp..kngkwvlvrylpyr 89 
                 +++  ++ lD+  +i rF++ ++++  l ++dv Gr++ ++  ++++a  + +++   +r+g++ eve +++  k ++++l r + ++
  EHU00734.1 119 EANSVIVILDQRGNIQRFNRLSEEYTGLYEQDViGRNVFQLfmTKQEAAASRRNIAGFFRDGNSYEVERWIKtmKGQRLFLFRNKFVH 206
                 6778899*************99999999988855*****99433446666678999***************77788888988876665 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   8.2e-05      0.18      36      93 ..     291     349 ..     227     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
     GGDEF_2  36 rllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgglsvriGi 93 
                 +ll+a++ a+ +   + + l    gd++v+l    +++++ea++ r+++rl++ ++riG+
  EHU00734.1 291 QLLQAVSLAILSClsKNQTLGRLGGDEFVVLAEQTSQAALEAMATRILDRLRQ-PFRIGL 349
                 45666655554444455666677899***************************.****97 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.04        91       7      43 ..     117     154 ..     111     173 .. 0.70
   2 ?    7.5   0.0    0.0019       4.3       8      41 ..     263     293 ..     253     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.04
       PAS_8   7 fesspdgiavvd.lgdrivdvNqaalellGys.adlkge 43 
                 +  ++  i+++d +g+ i   N+  +e +G+  +d++g 
  EHU00734.1 117 VSEANSVIVILDqRGN-IQRFNRLSEEYTGLYeQDVIGR 154
                 5555666777997777.*************443555543 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
       PAS_8   8 esspdgiavvdlgdrivdvNqaalellGysadlk 41 
                 e s  g++ +dl++ +  vN+a+ +++G  ++l+
  EHU00734.1 263 EGSETGVVYLDLNN-FKKVNDAYGHMFG--DQLL 293
                 57888999999889.*************..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 5175.88
//
Query:       EHU00735.1  [L=288]
Description: enoyl-CoA hydratase/isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-18   65.2   0.0    6.9e-18   64.9   0.0    1.2  1  ECH_1     Enoyl-CoA hydratase/isomerase
    5.6e-11   42.5   0.0    8.6e-11   41.9   0.0    1.3  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   7.7e-22   6.9e-18      44     203 ..      69     236 ..      32     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 7.7e-22
                 EEEEE.BTSEEEEEB-HH...HHHHHHC..HHHHHHHCCHHHHHHHH..HHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CT CS
       ECH_1  44 vvLtG.gdkaFaaGadlk...emaeeek..akqallkeevlelwtkl..ytvpkpviaavnGaaigGGlelalacDiviaadnasfglnelklGlipga 134
                  v  +  +++F aG+dl+   e  +++   a  a  +  v+   +++  ++   +++a+++G a+gGG+e ala  ++ a +na+ g +e+ + l+pg+
  EHU00735.1  69 WVTGSlVPQMFNAGGDLRffvECIRNNRweALRAYARACVDCIHSAArgFNTGAVTLAMIEGSALGGGFEAALAHHFILAQNNARMGFPEIAFNLFPGM 167
                 454458899*******97333455555565555555555555555551156678********************************************* PP

                 TCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHHHHH CS
       ECH_1 135 ggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrqlke 203
                 gg   +ar+ G+++Aee+++ g++ sa+  + +Glvdkv+   +  + ++  +  l  k + + ++lk+
  EHU00735.1 168 GGYSLVARRSGMKLAEELIIEGESHSAEWYETRGLVDKVFQPGDSYRATRTFIDTLRPKLNGVRAMLKA 236
                 ***************************************998888888888888888666555555554 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   9.6e-15   8.6e-11      42     238 ..      72     273 ..      37     287 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 9.6e-15
                 EESSSSECE--B--HHHHHHHHCS-THH.HHHHHHHHHHHHHHHC...-SS-EEEEE-BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHH CS
       ECH_2  42 kgagekafCAGgDvralyeaakegkkee.eeffreeYklnyliat...ypkpvvalmdGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgs 136
                  +  ++ f AGgD+r ++e ++++++e+ +++ r+  ++ +  a+       ++a+++G ++GgG   ++  +f  + +++++  PE+a  lfP  Gg 
  EHU00735.1  72 GSLVPQMFNAGGDLRFFVECIRNNRWEAlRAYARACVDCIHSAARgfnTGAVTLAMIEGSALGGGFEAALAHHFILAQNNARMGFPEIAFNLFPGMGGY 170
                 4456789*****************9998899999999998888753114557889*******************************************9 PP

                 HHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........--------......----SHHHHHHHHHHHT.-S.-TTT CS
       ECH_2 137 yfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaelessdeeaveevleelaeeaeeeeeeselaekreaidrlfsad.svee 233
                  + +r +g +l++ l + G++ +++   + gl +++++  +  + ++++ ++ + + + v+++l++ ++  + ++ ++ +  +++++d +fs + +  +
  EHU00735.1 171 SLVARRSGmKLAEELIIEGESHSAEWYETRGLVDKVFQPGDSYRATRTFIDTLRPKLNGVRAMLKARQRVLQLSR-AELMDITEDWVDYAFSLEaKDIA 268
                 999999887***************99999*****99998888888877777777779999999998765555433.34444577899999976532223 PP

                 HHHHH CS
       ECH_2 234 iveaL 238
                  +e+L
  EHU00735.1 269 YMERL 273
                 34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2438.80
//
Query:       EHU00736.1  [L=232]
Description: L-ribulose-5-phosphate 4-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-45  153.3   0.3    8.9e-45  152.9   0.3    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.3     5e-49   8.9e-45       1     184 [.       7     196 ..       7     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 5e-49
                  HHHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEE.EEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HH CS
  Aldolase_II   1 eelaeasrllarrglvegtgGniSvrvpeedsfl.itpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspa 97 
                  +++ ea+ +l +++lv+ t+Gn+S+ ++ e+++l i+psgv+++ ++ +d+vvvdl sgev+eg +  ++pss+t++H+a+y a p+++ +vHtHs +
   EHU00736.1   7 QQVLEANLDLPKHNLVTFTWGNVSALDR-EQGLLvIKPSGVSYDVMKVDDMVVVDLASGEVIEG-T--KRPSSDTATHRALYLAWPEVGGIVHTHSRH 100
                  57899********************988.556666*********************99****88.3..58**************************** PP

                  HHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH........HHHHHHHHHH......S-SEEEETTTEEEEEESSHHHHHHHHHHHHHH CS
  Aldolase_II  98 avalsalagkeglppltqeaaklllgdevpvipyaapgteel........gealaealke......dakavllrnHGlltvGetleeAvalaetleea 181
                  a++++ +a ++ +p+  +++a+  +++e+p+++ ++  +ee+        ge + e++++        +avl+++HG++++G+++++Av+ a++lee+
   EHU00736.1 101 ATIWA-QA-GRAIPAWGTTHADD-FYGEIPCTRAMR--DEEIqqqyewntGEVIIETFAQrglsptAIPAVLVNSHGPFAWGKDAHAAVHSAVVLEEV 193
                  *****.65.689***88888884.5688***76666..6899999*************9558*999888****************************9 PP

                  HHH CS
  Aldolase_II 182 aei 184
                  a +
   EHU00736.1 194 AYM 196
                  975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1741.51
//
Query:       EHU00737.1  [L=71]
Description: lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-08   33.6  19.1    3.6e-08   33.1  19.1    1.3  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
    3.8e-05   23.6  19.3      6e-05   23.0  19.3    1.4  1  Gly-zipper_Omp   Glycine zipper
    0.00028   20.6  20.2     0.0063   16.2   3.7    1.9  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
     0.0009   19.6   2.2     0.0022   18.4   2.2    1.7  1  LPAM_1           Prokaryotic membrane lipoprotein lipid attac
  ------ inclusion threshold ------
       0.17   12.0  14.2       0.24   11.5  14.2    1.4  1  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea
       0.46   10.3  22.9       0.59   10.0   7.4    2.1  2  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1  19.1   1.2e-11   3.6e-08       3      41 ..      34      70 ..      32      71 .] 0.96

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.2e-11
  Rick_17kDa_Anti  3 aliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnai 41
                     ++iGA+aG++ G+ +  ++g++lG+v+GAa+G+++G++i
       EHU00737.1 34 TAIGAGAGAIGGSVL--TNGSALGTVGGAAVGGIIGHQI 70
                     99*************..99*******************9 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0  19.3     2e-08     6e-05       4      38 ..      35      70 ..      33      71 .] 0.83

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2e-08
  Gly-zipper_Omp  4 aiGAaaGaliGg.avggrgtGaliGAavGaavGgli 38
                    aiGA aGa+ G+  ++g++ G+++GAavG+++G +i
      EHU00737.1 35 AIGAGAGAIGGSvLTNGSALGTVGGAAVGGIIGHQI 70
                    89*******999557788888888888888888877 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.7   2.1e-06    0.0063      20      41 ..      21      46 ..      16      50 .. 0.65
   2 !   11.0   8.0   9.3e-05      0.28       5      24 ..      50      68 ..      48      71 .] 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
                     XXX....XXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG 20 liG....sgggkGAaiGAaaGalaGg 41
                     l+G    s++ +++aiGA+aGa++G 
       EHU00737.1 21 LSGcsnwSKRDRNTAIGAGAGAIGGS 46
                     55565566666677777777777775 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.3e-05
                     XXXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG  5 rGAaiGAaaGAvvGaliGsg 24
                     +G a G+++GA+vG++iG +
       EHU00737.1 50 NGSALGTVGGAAVGGIIG-H 68
                     688999999999999999.3 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.2   7.2e-07    0.0022       1      18 []       5      25 ..       5      25 .. 0.98

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.2e-07
      LPAM_1  1 MKKi...llalgalllLsGCs 18
                MKK+   +la +++++LsGCs
  EHU00737.1  5 MKKLtvaVLATTLVVALSGCS 25
                ********************9 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  14.2   8.1e-05      0.24      17      59 ..      23      67 ..       5      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.1e-05
  Bacteriocin_IIc 17 GGkcaqgtvggivggalaGaatGaa..tlgilgaavGavvGavvG 59
                     G +++ ++  +++ ga aGa++G +   +  lg+++Ga+vG++ G
       EHU00737.1 23 GCSNWSKRDRNTAIGAGAGAIGGSVltNGSALGTVGGAAVGGIIG 67
                     4489999999***************76677788888888888887 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.3    0.0023       6.7      30      41 ..      35      46 ..      32      49 .. 0.62
   2 ?   10.0   7.4    0.0002      0.59       7      24 ..      51      68 ..      48      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0023
  Gly-zipper_OmpA 30 aiGAasGavaGl 41
                     aiGA++Ga++G+
       EHU00737.1 35 AIGAGAGAIGGS 46
                     566666666665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0002
  Gly-zipper_OmpA  7 GAalGAaaGAavGaitGs 24
                     G alG ++GAavG+i G+
       EHU00737.1 51 GSALGTVGGAAVGGIIGH 68
                     99************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 543.70
//
Query:       EHU00738.1  [L=107]
Description: translation initiation factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-17   63.8   0.3      2e-17   63.5   0.3    1.1  1  SUI1      Translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.3   1.1e-21     2e-17       4      76 ..      31     100 ..      28     101 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.1e-21
        SUI1   4 kihirleqrgg.rKkvTtvsgleafgidlkklakelkkkfacsgsvvkdggeeiqvQGdqrkkvaelLtekygv 76 
                  ++i++++ g+ +K v +++g+++++  l+ la elkkk++c+gsv kdg  +i++QGd r+ ++ lL+ k g+
  EHU00738.1  31 IVRIQRQTSGRkGKGVCLITGVDMDDGALNLLAAELKKKCGCGGSV-KDG--VIEIQGDKRDLLKSLLEAK-GM 100
                 699*****9999*********************************8.999..9****************99.86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 966.65
//
Query:       EHU00739.1  [L=237]
Description: orotidine-5'-phosphate decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-51  173.8   0.0    4.5e-51  173.6   0.0    1.0  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6   0.0   2.5e-55   4.5e-51       2     225 .]       8     229 ..       7     229 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.6 bits;  conditional E-value: 2.5e-55
                 EEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHHH CS
   OMPdecase   2 nLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGkas 100
                 ++ +alD+++ + +l+++d+++p  + lK++ ++++ +g      +l++ ++++gf+if+D+Kf+DI+nt +++++   a++++++++v+vha  G  +
  EHU00739.1   8 PVLVALDYHDLNSALHFVDQIEPGSCRLKVGKEMFTLFG-----PQLVKTLQQRGFEIFLDLKFHDIPNTTAHAVA---AAADLGVWMVNVHASGGARM 98 
                 689************************************.....*******************************7...899***************** PP

                 HHHHHHHHHHTT..S.EEEEEESTSSGGHHHHHH.H..SHHHHHHHHHHHHHHHTTESEEECCCHTH.HHHHH.TTCSCEEEHHHTTEEEEECTTCCGG CS
   OMPdecase 101 vkalaeaaekwg..nrgllilaqmsskgnlmlqe.k..gytqacveaarehkaedfvmGfvaqetln.ateed.addfihltpgigleqggdgkgqqyn 192
                 + a+ ea+  +g  ++ l++++ ++s+++ +l   +      + +e++++ ++e++++G+v++++++ + ++  + df  +tpgi++ +g+d+++q++ 
  EHU00739.1  99 MNAAREALVPFGqqAPLLIAVTVLTSMNADDLLGlGitLSPAEQAERLAKLTHECGLDGVVCSAHEAaRFKQViGRDFTLVTPGIRP-AGSDAGDQRRV 196
                 *********99988889****************9956899***************************8444557*************.*********** PP

                 GHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHH CS
   OMPdecase 193 tpekligiagadiiivGRgIlkagdpveeaery 225
                 +++++++ ag d++++GR+++++++p+++++++
  EHU00739.1 197 MTPQQAKLAGVDYMVIGRPVTQSANPAATLKAI 229
                 ****************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1828.52
//
Query:       EHU00740.1  [L=389]
Description: putative periplasmic heat shock protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-12   44.4   1.4     0.0027   17.7   0.0    6.3  6  TPR_2           Tetratricopeptide repeat
    8.7e-12   44.6   6.8    1.4e-11   43.9   6.8    1.3  1  Rubredoxin_2    Rubredoxin metal binding domain
    1.5e-11   44.6  12.9    2.4e-05   24.7   0.1    4.9  7  TPR_19          Tetratricopeptide repeat
    5.6e-11   42.3  17.5       0.19   12.7   0.0    7.8  7  TPR_14          Tetratricopeptide repeat
    1.4e-10   41.7   3.1       0.69   10.6   0.0    5.4  5  TPR_16          Tetratricopeptide repeat
    9.4e-10   37.8   9.6      0.088   12.9   0.0    6.2  7  TPR_7           Tetratricopeptide repeat
    1.4e-08   34.2   0.3      0.022   14.5   0.0    4.7  4  TPR_1           Tetratricopeptide repeat
    1.4e-07   31.7   5.6     0.0003   21.0   0.8    4.6  5  TPR_12          Tetratricopeptide repeat
    6.8e-07   29.4   1.8    0.00084   19.5   0.0    4.0  4  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
    7.8e-07   28.8   2.7      0.039   14.2   0.0    6.1  6  TPR_8           Tetratricopeptide repeat
    1.2e-05   24.9   0.0      0.005   16.5   0.0    3.6  3  TPR_11          TPR repeat
    0.00018   22.0  10.7        3.8    8.3   0.0    6.9  7  TPR_6           Tetratricopeptide repeat
    0.00047   19.9   4.7         10    6.1   0.0    4.9  4  TPR_10          Tetratricopeptide repeat
     0.0014   18.4  11.7      0.058   13.1   4.4    2.8  3  TPR_21          Tetratricopeptide repeat-like domain
     0.0022   17.0   2.1      0.086   11.7   0.7    2.1  2  NARP1           NMDA receptor-regulated protein 1
     0.0095   16.4   0.0      0.055   14.0   0.0    2.1  2  SPG48           AP-5 complex subunit, vesicle trafficking
  ------ inclusion threshold ------
       0.01   15.5   2.0      0.053   13.2   0.7    2.4  2  HrpB1_HrpK      Bacterial type III secretion protein (HrpB1_H
      0.049   14.0  14.8        2.8    8.3   0.3    4.9  6  TPR_20          Tetratricopeptide repeat
       0.07   13.8   0.4    1.4e+02    3.6   0.1    4.3  4  TPR_4           Tetratricopeptide repeat
      0.073   13.5   0.0         16    6.2   0.0    3.8  4  TPR_17          Tetratricopeptide repeat
      0.094   13.5   0.1       0.17   12.6   0.1    1.4  1  zinc_ribbon_15  zinc-ribbon family
       0.11   12.5   0.1       0.39   10.7   0.0    1.9  1  HypA            Hydrogenase/urease nickel incorporation, meta
       0.11   12.6   7.3        2.4    8.4   0.3    4.0  4  TPR_9           Tetratricopeptide repeat
       0.39   11.1   4.8         22    5.6   0.1    4.4  4  PPR             PPR repeat
       0.48   10.4   4.3        1.2    9.1   4.3    1.7  1  zf-CCHC_3       Zinc knuckle


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1   8.2e+02       8      31 ..      42      65 ..      39      67 .. 0.81
   2 ?    5.5   0.0      0.03        22       2      22 ..      70      90 ..      69      91 .. 0.93
   3 !    8.1   0.2    0.0043       3.1       5      27 ..     111     133 ..     108     136 .. 0.89
   4 ?    0.3   0.0       1.4     1e+03      11      30 ..     151     170 ..     149     173 .. 0.78
   5 ?    3.5   0.1      0.13        96       3      26 ..     182     205 ..     180     212 .. 0.86
   6 !   17.7   0.0   3.8e-06    0.0027       5      32 ..     218     245 ..     214     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.1
       TPR_2  8 GlayyklgdyeeAleafekAleld 31
                G   + +++ ++A+++f   l+ d
  EHU00740.1 42 GVNFLLSNQQDKAVDLFLDMLKED 65
                6777888999*******9888876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.03
       TPR_2  2 ealynlGlayyklgdyeeAle 22
                ea+  lG++ + +g+ ++A++
  EHU00740.1 70 EAHLTLGNLFRSRGEVDRAIR 90
                89*****************96 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0043
       TPR_2   5 ynlGlayyklgdyeeAleafekA 27 
                  +lG+ y+++g y++A++ f++ 
  EHU00740.1 111 QQLGRDYMAAGLYDRAEDMFKQL 133
                 579***************99986 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.4
       TPR_2  11 yyklgdyeeAleafekAlel 30 
                 + +  d+ +A+e  e+ ++l
  EHU00740.1 151 HQATSDWLQAIEVAERLVKL 170
                 56667888999999999988 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.13
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                  +++l+l ++ ++d+++A  +++k
  EHU00740.1 182 FYCELALQAMSSDDLDRAMTLLKK 205
                 7999**************999988 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 3.8e-06
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  ++G++++++g+y +A+e+++++l  d 
  EHU00740.1 218 IMMGRILMEKGEYGKAVEHLQRVLDQDK 245
                 679*********************9886 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   6.8   1.9e-14   1.4e-11       1      28 []     355     382 ..     355     382 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.9e-14
  Rubredoxin_2   1 YvCsqCGfesakwfGrCpsCgsWntlke 28 
                   Y+C++CGf++++++++CpsC++W ++k+
    EHU00740.1 355 YRCQKCGFTAHALYWHCPSCRTWSSVKP 382
                   9************************998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.5e-05     0.018       5      66 ..      49     109 ..      45     113 .. 0.88
   2 !    9.6   0.8    0.0018       1.3      12      56 ..      94     138 ..      93     148 .. 0.83
   3 ?   -1.3   0.0       4.5   3.3e+03       9      37 ..     159     189 ..     153     191 .. 0.69
   4 !   24.7   0.1   3.4e-08   2.4e-05       2      57 ..     191     246 ..     190     252 .. 0.94
   5 ?    1.3   1.1      0.68   4.9e+02      24      61 ..     264     300 ..     250     304 .. 0.71
   6 ?    1.1   0.7      0.82   5.9e+02       7      33 ..     280     306 ..     275     312 .. 0.52
   7 ?    0.5   0.2       1.2   8.7e+02       2      51 ..     292     341 ..     292     345 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.5e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 ++ + A++l+  +l+ed +  ea l L ++  + g++d A+++ + l+e++   ++ ++LlA
  EHU00740.1  49 NQQDKAVDLFLDMLKEDSGTVEAHLTLGNLFRSRGEVDRAIRIHQSLMESASL-SYEQRLLA 109
                 66789*******************************************99988.65555555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0018
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +l+e+a   + + + a  +L + ++a+g +d Ae++ ++l +e+ 
  EHU00740.1  94 SLMESASLSYEQRLLAIQQLGRDYMAAGLYDRAEDMFKQLTDETD 138
                 5788887778888899999*********************99985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 4.5
      TPR_19   9 eAlalleqa..lqedpknaearllLAealla 37 
                 +A++  e++  l +d + +e++  ++e+ l+
  EHU00740.1 159 QAIEVAERLvkLGKDKQKGEIAHFYCELALQ 189
                 6777777751245588888888888888887 PP

  == domain 4  score: 24.7 bits;  conditional E-value: 3.4e-08
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + + d+++A+ ll++  ++d ++a++ + + ++l++ g++ +A + L++++++d+ 
  EHU00740.1 191 MSSDDLDRAMTLLKKGEAADRQSARVSIMMGRILMEKGEYGKAVEHLQRVLDQDKE 246
                 6678***********9999**********************************975 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.68
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddary 61 
                 +++a+++  + +++ +  ++Ae  L+a++e+++  a++
  EHU00740.1 264 QPDAWAAFLKRCVEENTGAAAELYLSAILEQEQG-AEA 300
                 5566666666667777778888888888888888.544 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.82
      TPR_19   7 yaeAlalleqalqedpknaearllLAe 33 
                   +A++l+ +a+ e  + aea+ ++++
  EHU00740.1 280 TGAAAELYLSAILEQEQGAEAAQNYIN 306
                 445555555554444455555554555 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 1.2
      TPR_19   2 laegdyaeAlalleq.alqedpknaearllLAeallalgqldeAealLdal 51 
                 l++++ aeA++ + +  lq  p++      L+e +l   +   A++ L  l
  EHU00740.1 292 LEQEQGAEAAQNYINhQLQRHPNMRVFHR-LMEFHLHEAEDGRAKESLMVL 341
                 57777777777666625888886655555.888888888888888877655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.073        52      14      42 ..      48      76 ..      39      78 .. 0.87
   2 !    8.2   0.0    0.0073       5.2       1      23 [.      69      91 ..      69      98 .. 0.90
   3 !   10.8   0.3    0.0011      0.75       3      28 ..     109     134 ..     107     140 .. 0.88
   4 ?    3.6   0.1      0.21   1.5e+02       3      33 ..     143     173 ..     141     177 .. 0.89
   5 !   11.9   0.2   0.00046      0.33       6      44 .]     185     223 ..     180     223 .. 0.91
   6 !   12.7   0.0   0.00026      0.19       6      33 ..     219     246 ..     214     255 .. 0.89
   7 ?    3.0   0.2      0.32   2.3e+02       3      41 ..     284     322 ..     282     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.073
      TPR_14 14 lGdpdeAiallrralalaPddaeawllla 42
                + + d+A++l+ ++l+ + +  ea+l l+
  EHU00740.1 48 SNQQDKAVDLFLDMLKEDSGTVEAHLTLG 76
                6789**************99999999887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0073
      TPR_14  1 peallalaeallalGdpdeAial 23
                +ea+l l+ +++ +G+ d+Ai++
  EHU00740.1 69 VEAHLTLGNLFRSRGEVDRAIRI 91
                589******************97 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0011
      TPR_14   3 allalaeallalGdpdeAiallrral 28 
                 a ++l++ ++a+G +d+A+++++++ 
  EHU00740.1 109 AIQQLGRDYMAAGLYDRAEDMFKQLT 134
                 5689******************9985 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.21
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd 33 
                 al++l+ ++ a  d+ +Ai++++r+++l+ d
  EHU00740.1 143 ALQQLLLIHQATSDWLQAIEVAERLVKLGKD 173
                 789999999999*************998765 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00046
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 +la   + ++d+d+A++ll++  a++ ++a++ ++++++
  EHU00740.1 185 ELALQAMSSDDLDRAMTLLKKGEAADRQSARVSIMMGRI 223
                 68899999************************9999985 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 0.00026
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 +++++l++ G++ +A+++l+r+l+++ +
  EHU00740.1 219 MMGRILMEKGEYGKAVEHLQRVLDQDKE 246
                 789*********************9875 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.32
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 a l l ++l++ +  ++A ++ +  l+++P+ +++++l+
  EHU00740.1 284 AELYLSAILEQEQGAEAAQNYINHQLQRHPNMRVFHRLM 322
                 55666667777777888999***********99988765 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0012      0.86      14      54 ..      52      89 ..      48      98 .. 0.89
   2 !   10.1   0.1    0.0014         1       3      26 ..     113     136 ..     112     140 .. 0.92
   3 ?    5.9   0.1     0.028        20       6      56 ..     150     202 ..     146     214 .. 0.69
   4 !   10.6   0.0   0.00097      0.69       2      28 ..     219     245 ..     218     248 .. 0.92
   5 ?   -1.2   0.5       4.6   3.3e+03      52      61 ..     282     291 ..     267     304 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0012
      TPR_16 14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54
                d+A+ ++   lk d   + ++eA+l lg+++  +g++++A+
  EHU00740.1 52 DKAVDLFLDMLKED---SGTVEAHLTLGNLFRSRGEVDRAI 89
                56888888888888...***********************8 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0014
      TPR_16   3 laraalragdyddAaaaleaalkr 26 
                 l+r++++ag yd+A+ +++++++ 
  EHU00740.1 113 LGRDYMAAGLYDRAEDMFKQLTDE 136
                 89******************9886 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.028
      TPR_16   6 aalragdyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeAaal 56 
                 ++ +  d+ +A++++e+++k++++      a+++ +l++ a    +l++A  l
  EHU00740.1 150 IHQATSDWLQAIEVAERLVKLGKDKQKgeIAHFYCELALQAMSSDDLDRAMTL 202
                 566778999*************8877755555555555555555555555555 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00097
      TPR_16   2 alaraalragdyddAaaaleaalkrdp 28 
                 +++r++++ g+y +A++ l+++l++d+
  EHU00740.1 219 MMGRILMEKGEYGKAVEHLQRVLDQDK 245
                 79**********************995 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 4.6
      TPR_16  52 eAaalyraal 61 
                 +Aa+ly++a+
  EHU00740.1 282 AAAELYLSAI 291
                 3335555544 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       6.2   4.4e+03      13      26 ..      49      62 ..      46      66 .. 0.77
   2 !   12.9   0.0   0.00012     0.088       1      26 [.      71      96 ..      71     106 .. 0.84
   3 !    9.6   0.1    0.0014      0.99       2      31 ..     110     137 ..     109     142 .. 0.85
   4 ?    3.0   0.2      0.17   1.2e+02       7      31 ..     149     173 ..     143     199 .. 0.70
   5 ?   -0.5   0.0       2.2   1.6e+03      21      35 ..     183     198 ..     177     210 .. 0.70
   6 !   12.6   0.0   0.00015      0.11       5      32 ..     220     245 ..     218     249 .. 0.88
   7 ?   -1.6   0.1       5.3   3.8e+03      17      35 ..     282     298 ..     278     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.2
       TPR_7 13 GdyeeAielyeqsL 26
                ++ ++A++l+  +L
  EHU00740.1 49 NQQDKAVDLFLDML 62
                66799**9997754 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsL 26
                a+l L++l++++G+ ++Ai++++ ++
  EHU00740.1 71 AHLTLGNLFRSRGEVDRAIRIHQSLM 96
                5788******************9844 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0014
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 + +L+r y + G y++A++ ++q   +++ 
  EHU00740.1 110 IQQLGRDYMAAGLYDRAEDMFKQ--LTDET 137
                 568********************..76665 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.17
       TPR_7   7 rlysrlGdyeeAielyeqsLaltkd 31 
                  ++++  d+ +Aie+ e++  l kd
  EHU00740.1 149 LIHQATSDWLQAIEVAERLVKLGKD 173
                 5899999999999999993344333 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 2.2
       TPR_7  21 lyeqsL.altkdpeda 35 
                 ++e +L a+ +d++d+
  EHU00740.1 183 YCELALqAMSSDDLDR 198
                 4555666666666554 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 0.00015
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdp 32 
                 ++r+  + G+y +A+e++++  +l+ d 
  EHU00740.1 220 MGRILMEKGEYGKAVEHLQR--VLDQDK 245
                 8*******************..777765 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 5.3
       TPR_7  17 eAielyeqsLaltkdpeda 35 
                  A+ely    a+ +++++a
  EHU00740.1 282 AAAELYLS--AILEQEQGA 298
                 59999999..888887776 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0064       4.6       2      21 ..      70      89 ..      69      91 .. 0.93
   2 ?    5.7   0.3      0.02        14       6      26 ..     112     132 ..     109     132 .. 0.91
   3 ?   -0.3   0.0       1.6   1.1e+03       4      26 ..     183     205 ..     180     207 .. 0.80
   4 !   14.5   0.0   3.1e-05     0.022       7      31 ..     220     244 ..     214     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0064
                HHHHHHHHHHHHTT-HHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAl 21
                +a+  lGn++++ g+ d A+
  EHU00740.1 70 EAHLTLGNLFRSRGEVDRAI 89
                8999***************9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyek 26 
                 +lG  y+  g yd A++ +++
  EHU00740.1 112 QLGRDYMAAGLYDRAEDMFKQ 132
                 58999*************986 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyek 26 
                 ++ l++  ++  ++d A    +k
  EHU00740.1 183 YCELALQAMSSDDLDRAMTLLKK 205
                 88899999999999999876665 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 3.1e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                 +G +++++g+y +A+e+ +++L  +
  EHU00740.1 220 MGRILMEKGEYGKAVEHLQRVLDQD 244
                 799*******************987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.1   2.9e+03      52      68 ..      42      58 ..      36      62 .. 0.83
   2 !   21.0   0.8   4.2e-07    0.0003       5      71 ..      71     133 ..      67     135 .. 0.89
   3 ?    2.9   0.8      0.19   1.4e+02      11      75 ..     149     210 ..     139     212 .. 0.70
   4 !   14.4   0.2   4.7e-05     0.034      10      76 ..     180     245 ..     176     246 .. 0.81
   5 !   12.4   0.0   0.00021      0.15       8      48 ..     219     252 ..     212     276 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.1
      TPR_12 52 grlyralgryeeAlell 68
                g  +++++++++A++l+
  EHU00740.1 42 GVNFLLSNQQDKAVDLF 58
                66778999*****9998 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.2e-07
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 a+  l+++ r +g+ d A+++++  +e a+ +    +++ + + + Lgr y a+g y+ A++++++ 
  EHU00740.1  71 AHLTLGNLFRSRGEVDRAIRIHQSLMESASLS----YEQRLLAIQQLGRDYMAAGLYDRAEDMFKQL 133
                 4558*************************655....556999***********************96 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.19
      TPR_12  11 avlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +++++  ++ +A+e  e+ + +     ++++ + a  ++ L+     +++++ A  ll++  a++
  EHU00740.1 149 LIHQATSDWLQAIEVAERLVKLG---KDKQKGEIAHFYCELALQAMSSDDLDRAMTLLKKGEAAD 210
                 57788888888888888888888...345556688888888777666677777777777766655 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 4.7e-05
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 a+++++l   + + + l++a+ + ++    d+ + a++ + +gr++ + g+y +A+e+l+++l+ ++
  EHU00740.1 180 AHFYCELALQAMSSDDLDRAMTLLKKGEAADR-QSARVSIMMGRILMEKGEYGKAVEHLQRVLDQDK 245
                 55555555556677889999999977777776.99**********9999************998765 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 0.00021
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattl 48 
                  ++ +l++ g+y +A e+l+++l++ ++l       +++tl
  EHU00740.1 219 MMGRILMEKGEYGKAVEHLQRVLDQDKEL-------VSETL 252
                 47888999999999999999998887554.......44444 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.34   2.5e+02      18      62 ..      30      75 ..      14      78 .. 0.85
   2 ?    2.2   0.0      0.29   2.1e+02      20      49 ..     104     133 ..      84     144 .. 0.79
   3 !   19.5   0.0   1.2e-06   0.00084       7      81 ..     159     239 ..     153     240 .. 0.85
   4 ?   -0.7   0.1       2.3   1.7e+03      31      76 ..     257     301 ..     250     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.34
                HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHH CS
      ANAPC3 18 aetespedayllAlclylngqykrAyellrka.klnskslgcrylf 62
                +e+++++  y  +  ++l++q ++A +l+ ++ k++s + ++++++
  EHU00740.1 30 QESNRLSREYVAGVNFLLSNQQDKAVDLFLDMlKEDSGTVEAHLTL 75
                67788888999999999***************99999999999876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.29
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka 49 
                  +++ ++  l+  +  +g y+rA + ++++
  EHU00740.1 104 EQRLLAIQQLGRDYMAAGLYDRAEDMFKQL 133
                 5667778889999***********999998 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHH...HHH--HHHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   7 nAiflaerlla..aetespedayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  Ai +aerl++  ++++  e a+++   Al   ++ + +rA++ll+k    + +s ++ + +++ l + ++y +A+ +L++
  EHU00740.1 159 QAIEVAERLVKlgKDKQKGEIAHFYcelALQAMSSDDLDRAMTLLKKGeAADRQSARVSIMMGRILMEKGEYGKAVEHLQR 239
                 799*******666555555556665455999999**************9******************************87 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.3
                 HHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  31 lclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAi 76 
                  c+ +++q +    +l+++  ++++ +++ l+  + l++++  eA 
  EHU00740.1 257 TCFQRLNQPDAWAAFLKRC-VEENTGAAAELYLSAILEQEQGAEAA 301
                 5777777777777888888.44455555666655556666555555 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.95   6.8e+02       2      21 ..      70      89 ..      69      91 .. 0.90
   2 ?    2.7   0.1      0.26   1.9e+02       6      27 ..     112     133 ..     109     136 .. 0.85
   3 ?   -1.5   0.0       5.7   4.1e+03       5      30 ..     145     170 ..     142     172 .. 0.71
   4 ?    2.3   0.1      0.35   2.5e+02       1      29 [.     180     208 ..     180     213 .. 0.83
   5 !   14.2   0.0   5.5e-05     0.039       2      32 ..     215     245 ..     214     247 .. 0.89
   6 ?    1.8   0.0       0.5   3.6e+02      12      29 ..     260     277 ..     257     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.95
                CHHHHHHHHHHHTT-HHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAk 21
                ea++ lg++ ++ g+ + A+
  EHU00740.1 70 EAHLTLGNLFRSRGEVDRAI 89
                78999***********9998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.26
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyeka 27 
                 +lg+ y+  g y+ A+  +++ 
  EHU00740.1 112 QLGRDYMAAGLYDRAEDMFKQL 133
                 6788899************997 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.7
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                 ++l +i++ + d  +A+e+ e+ ++l
  EHU00740.1 145 QQLLLIHQATSDWLQAIEVAERLVKL 170
                 56666666666666899999888876 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.35
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekale 29 
                 a+ y+ l++  ++  d++ A+  ++k   
  EHU00740.1 180 AHFYCELALQAMSSDDLDRAMTLLKKGEA 208
                 5789999999999*********9999655 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 5.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++  ++g+i++++g+y +A+e ++++l+ d+
  EHU00740.1 215 RVSIMMGRILMEKGEYGKAVEHLQRVLDQDK 245
                 66789*********************98776 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.5
                 HHTT-HHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekale 29 
                 + l++ +++ +++++++e
  EHU00740.1 260 QRLNQPDAWAAFLKRCVE 277
                 6799************98 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.054        39       1      14 [.      76      89 ..      68      90 .. 0.95
   2 ?   -3.1   0.0       9.4   6.7e+03       9      28 ..     195     214 ..     192     216 .. 0.76
   3 !   16.5   0.0   6.9e-06     0.005       1      26 [.     221     246 ..     221     249 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.054
      TPR_11  1 GdayyeqGkyeeAi 14
                G++++++G+ + Ai
  EHU00740.1 76 GNLFRSRGEVDRAI 89
                99**********99 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.4
      TPR_11   9 kyeeAieaYkkAlkldPdna 28 
                 +++ A++ +kk  + d ++a
  EHU00740.1 195 DLDRAMTLLKKGEAADRQSA 214
                 68889999998877777766 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 6.9e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G++++e+G+y +A+e++++ l+ d +
  EHU00740.1 221 GRILMEKGEYGKAVEHLQRVLDQDKE 246
                 99********************9976 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0         3   2.2e+03      11      24 ..      46      59 ..      35      66 .. 0.72
   2 ?    3.3   0.0      0.22   1.6e+02       1      25 [.      70      94 ..      70     102 .. 0.84
   3 ?    5.9   0.3     0.033        23       5      29 ..     112     136 ..     109     136 .. 0.90
   4 ?    3.2   0.0      0.24   1.7e+02      13      28 ..     148     169 ..     139     170 .. 0.70
   5 ?   -0.4   0.1       3.3   2.4e+03      13      25 ..     191     205 ..     183     205 .. 0.70
   6 !    8.3   0.0    0.0053       3.8       5      29 ..     219     243 ..     216     244 .. 0.90
   7 ?   -1.2   0.1       5.8   4.1e+03       3      21 ..     286     303 ..     283     314 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 3
                HHHHHHHHHHHHHH CS
       TPR_6 11 rklgdtdkAleale 24
                +  ++ dkA++++ 
  EHU00740.1 46 LLSNQQDKAVDLFL 59
                444699****9885 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.22
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  1 dAlyklalsyrklgdtdkAlealer 25
                +A + l+ ++r+ g+ d+A+++ ++
  EHU00740.1 70 EAHLTLGNLFRSRGEVDRAIRIHQS 94
                688999******99******97555 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 +l++ y ++g +d+A +++++l +e
  EHU00740.1 112 QLGRDYMAAGLYDRAEDMFKQLTDE 136
                 689999**99***********9875 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.24
                 H......HHHHHHHHHHHHHHH CS
       TPR_6  13 l......gdtdkAlealerlik 28 
                 l       d+ +A+e  erl+k
  EHU00740.1 148 LlihqatSDWLQAIEVAERLVK 169
                 33555536999*********97 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 3.3
                 H..HHHHHHHHHHHH CS
       TPR_6  13 l..gdtdkAlealer 25 
                 +  +d d+A+++l++
  EHU00740.1 191 MssDDLDRAMTLLKK 205
                 2446999***99975 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 ++++ + + g++ kA+e l+r++++
  EHU00740.1 219 MMGRILMEKGEYGKAVEHLQRVLDQ 243
                 6899999988************986 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 5.8
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAle 21 
                 ly+ a + +++  +++A  
  EHU00740.1 286 LYLSAILEQEQ-GAEAAQN 303
                 45555555555.5555544 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.04        29       8      26 ..      75      93 ..      73      98 .. 0.87
   2 ?    6.0   0.3     0.016        11       5      27 ..     110     132 ..     106     133 .. 0.88
   3 ?   -0.1   0.1       1.3   9.3e+02      18      36 ..     150     168 ..     143     172 .. 0.78
   4 ?    6.1   0.0     0.015        10       8      29 ..     220     241 ..     218     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.04
      TPR_10  8 LanalrqrgrydeAealle 26
                L+n+ r+rg+ d+A ++++
  EHU00740.1 75 LGNLFRSRGEVDRAIRIHQ 93
                9**************9965 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.016
      TPR_10   5 lnNLanalrqrgrydeAeallee 27 
                    L++ + + g yd+Ae+++++
  EHU00740.1 110 IQQLGRDYMAAGLYDRAEDMFKQ 132
                 567****************9976 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.3
      TPR_10  18 ydeAealleealairrrll 36 
                  ++A  +  +a+++ +rl+
  EHU00740.1 150 IHQATSDWLQAIEVAERLV 168
                 5678888899******997 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.015
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 ++++l + g+y +A+++l+++l
  EHU00740.1 220 MGRILMEKGEYGKAVEHLQRVL 241
                 699*****************98 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.6   0.00041       0.3      11     141 ..       7     135 ..       5     143 .. 0.88
   2 !   13.1   4.4   8.1e-05     0.058      52     180 ..     120     248 ..      97     264 .. 0.74
   3 ?   -0.1   0.1      0.91   6.5e+02     108     137 ..     277     306 ..     267     322 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
      TPR_21  11 ilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakde 109
                 +l+ v++a + ++G +  q+ +++++++ s  Y + ++ + +++++ka +++ ++ +e +gt     a+L l +   ++g++++A    ++++e+a+  
  EHU00740.1   7 LLLPVAAAYGWYMGRRSAQQDKQQESNRLSREYVAGVNFLLSNQQDKAVDLFLDMLKEDSGT---VEAHLTLGNLFRSRGEVDRAIRIHQSLMESASLS 102
                 567899999999999999999999***********999999*****9999999999999999...8999******************999999999866 PP

      TPR_21 110 elka.larlRLarvllaekkydeAlktLeakke 141
                   ++ la  +L r ++a++ yd+A  + ++ ++
  EHU00740.1 103 YEQRlLAIQQLGRDYMAAGLYDRAEDMFKQLTD 135
                 5554167789*************9988776655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.1e-05
      TPR_21  52 akdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalar..lRLarvllaekkydeAlktL.eakkeeafaal 147
                 a+  ++a++++++l de +    +al +Lll ++a  + d+ +A +  e++++ +kd++  ++a+    La   +  +++d+A+++L +++ ++  +a+
  EHU00740.1 120 AGLYDRAEDMFKQLTDETDFR-IGALQQLLLIHQA--TSDWLQAIEVAERLVKLGKDKQKGEIAHfyCELALQAMSSDDLDRAMTLLkKGEAADRQSAR 215
                 444557777888888777666.6677777776665..468888888888888888888888888733589*999*************556778899999 PP

      TPR_21 148 vaelrGDilvaqgkldeAraaYqaAlaaleeka 180
                 v+ + G il+++g+  +A ++ q+ l++ +e  
  EHU00740.1 216 VSIMMGRILMEKGEYGKAVEHLQRVLDQDKELV 248
                 *********************999999988766 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.91
      TPR_21 108 deelkalarlRLarvllaekkydeAlktLe 137
                 +e+  a a+l L ++l +e+ +++A + ++
  EHU00740.1 277 EENTGAAAELYLSAILEQEQGAEAAQNYIN 306
                 344444455555555555555555544444 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.016        11     183     287 ..      26     134 ..      16     171 .. 0.74
   2 !   11.7   0.7   0.00012     0.086      16     136 ..     192     311 ..     176     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
                 S----SSHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHH...HHHHHHCTTT-HHHH.HHHHHHHHHTT-HH CS
       NARP1 183 sekepesallwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaev...meearklDlaDRyiN.skcakymLradeve 277
                 + k++es  l   y     +   ++++kA+++    ++++   ve +lt +++++  G++++A+++   + e+ +l  + R +   +  +  + a+ ++
  EHU00740.1  26 QDKQQESNRLSREYVAGVNFLLSNQQDKAVDLFLDMLKEDSGTVEAHLTLGNLFRSRGEVDRAIRIhqsLMESASLSYEQRLLAiQQLGRDYMAAGLYD 124
                 344455555566666677777788999************************************876222334556666666665233455566666666 PP

                 HHHHHHTTTS CS
       NARP1 278 eAeetvslFt 287
                 +Ae++    t
  EHU00740.1 125 RAEDMFKQLT 134
                 6666666555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00012
                 HHTHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-CH.HHHHHHHHT..SSS-HHHHHHHHHHTTTS-TT-SHHHHTH CS
       NARP1  16 eagkleeAlehLeekekqivDklavketkaelllkLgrkeeAeatyeaLlernpensk.YyeglekakklskedeeallalydelaekyprsdaprRlp 113
                  +++l++A+  L++ e        v+ +++++l++ g++ +A + +++ l++ +e  +     le++ + + ++ +a+ a++++++e+++ ++a   l 
  EHU00740.1 192 SSDDLDRAMTLLKKGEAADRQSARVSIMMGRILMEKGEYGKAVEHLQRVLDQDKELVSeTLPMLETCFQ-RLNQPDAWAAFLKRCVEENTGAAAELYLS 289
                 6899**************99*********************************9986515566666666.556689************99888877776 PP

                 HHH--HHHHHHHHHHHHHHHHHC CS
       NARP1 114 LdfleGeeFkelvdkYlrkaLrk 136
                   +le e+  e++++Y++++L++
  EHU00740.1 290 -AILEQEQGAEAAQNYINHQLQR 311
                 .58899999************98 PP

>> SPG48  AP-5 complex subunit, vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.7   2.7e+03      39      66 ..      98     125 ..      63     137 .. 0.70
   2 !   14.0   0.0   7.6e-05     0.055       8      46 ..     232     270 ..     226     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.7
       SPG48  39 asdlskarllLailqFfLnhgeavavda 66 
                 +++ls+++ lLai q   ++  a ++d 
  EHU00740.1  98 SASLSYEQRLLAIQQLGRDYMAAGLYDR 125
                 3467788889999998888877777774 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.6e-05
       SPG48   8 eavklLdllcrldsslvarvlptikrllqrlasdlskar 46 
                  av+ L+ + ++d++lv ++lp +++ +qrl++  ++a 
  EHU00740.1 232 KAVEHLQRVLDQDKELVSETLPMLETCFQRLNQPDAWAA 270
                 69*****************************99877775 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.63   4.5e+02      44      86 ..      68     109 ..      34     116 .. 0.75
   2 ?   13.2   0.7   7.4e-05     0.053      16     122 ..     185     294 ..     176     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.63
  HrpB1_HrpK  44 vaeldllegvlliergrweeAlrlLreveaeasgtpyakaLlA 86 
                 ++e++l  g+l  +rg+++ A+r+ +++ ++a +  y + LlA
  EHU00740.1  68 TVEAHLTLGNLFRSRGEVDRAIRIHQSLMESA-SLSYEQRLLA 109
                 4566677788999999*******999998554.4566666666 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.4e-05
  HrpB1_HrpK  16 evlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveaeasgt.pyakaLlAlcLa.alrDeeWrayAeevlesdadpd 112
                 e++ +a+ s+d + a +lL+   +   + a + ++ g +l+e+g++  A+  L+ v ++ ++       +l  c +   + ++W a  + ++e++++++
  EHU00740.1 185 ELALQAMSSDDLDRAMTLLKKGEAADRQSARVSIMMGRILMEKGEYGKAVEHLQRVLDQDKELvSETLPMLETCFQrLNQPDAWAAFLKRCVEENTGAA 283
                 677889999999999999999999999*****************************955544313334455555550556678*******999988877 PP

  HrpB1_HrpK 113 a.laLvkaLea 122
                 a l+L + Le+
  EHU00740.1 284 AeLYLSAILEQ 294
                 61444444444 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3    0.0039       2.8      16      78 ..      29      89 ..      21      99 .. 0.76
   2 ?   -0.3   0.1         2   1.4e+03      28      65 ..     113     149 ..     107     158 .. 0.53
   3 ?   -0.5   0.0       2.3   1.6e+03      40      55 ..     142     157 ..     135     176 .. 0.79
   4 ?    2.0   0.2      0.38   2.7e+02      27      63 ..     185     217 ..     159     220 .. 0.70
   5 ?    6.8   0.1     0.012       8.7      17      54 ..     209     246 ..     199     252 .. 0.82
   6 ?    4.6   0.3     0.056        40      14      82 ..     274     356 ..     260     358 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0039
      TPR_20 16 aanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplv 78
                +++ + l  ++      l  +++++A++++l++lk+d++    +a  +l  +f + g+ d ++
  EHU00740.1 29 QQESNRLSREYVAGVNFLLSNQQDKAVDLFLDMLKEDSGT--VEAHLTLGNLFRSRGEVDRAI 89
                555555666677777788999***************9988..778888888888888877554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2
      TPR_20  28 lAlallaagryeeAleqLleilkrdrkweddaarkqll 65 
                 l + ++aag y+ A e +++ l  + +++ +a ++ ll
  EHU00740.1 113 LGRDYMAAGLYDRA-EDMFKQLTDETDFRIGALQQLLL 149
                 55566666666665.33444444444444444444443 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.3
      TPR_20  40 eAleqLleilkrdrkw 55 
                  Al+qLl i +++++w
  EHU00740.1 142 GALQQLLLIHQATSDW 157
                 5999999999999998 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.38
      TPR_20  27 dlAlallaagryeeAleqLleilkrdrkweddaarkq 63 
                 +lAl+ ++  +    l++ +++lk+  ++++++ar  
  EHU00740.1 185 ELALQAMSSDD----LDRAMTLLKKGEAADRQSARVS 217
                 55555555555....5555666777777777777765 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.012
      TPR_20  17 anpddldarldlAlallaagryeeAleqLleilkrdrk 54 
                 a+ +     + + + l+++g+y +A+e+L ++l +d++
  EHU00740.1 209 ADRQSARVSIMMGRILMEKGEYGKAVEHLQRVLDQDKE 246
                 5555666777888999******************9986 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.056
      TPR_20  14 alaanpddldarldlAlallaagryeeAleqLleilkrdrkw..............eddaarkqllkifealgsqdplvakyR 82 
                 ++ ++ +  +a+l l+  l +++  e+A + + + l+r+ +               ed++a++ l+ + +++g+q     +yR
  EHU00740.1 274 RCVEENTGAAAELYLSAILEQEQGAEAAQNYINHQLQRHPNMrvfhrlmefhlheaEDGRAKESLMVLRDLVGEQIRTKPRYR 356
                 555555666788888888888888888888888888888888888888888888889**********9999999866666666 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       1.3   9.4e+02       2      20 ..      70      88 ..      69      91 .. 0.84
   2 ?    3.6   0.1      0.19   1.4e+02       7      24 ..     113     130 ..     112     132 .. 0.89
   3 ?   -1.2   0.1       6.6   4.7e+03       7      24 ..     186     203 ..     180     209 .. 0.69
   4 ?    3.4   0.0      0.21   1.5e+02       2      26 .]     215     239 ..     214     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.3
       TPR_4  2 rallaLArallalGdldeA 20
                 a+l L+ +   +G+ d+A
  EHU00740.1 70 EAHLTLGNLFRSRGEVDRA 88
                5899999999999999998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.19
       TPR_4   7 LArallalGdldeArall 24 
                 L+r + a+G +d+A++++
  EHU00740.1 113 LGRDYMAAGLYDRAEDMF 130
                 899************986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 6.6
       TPR_4   7 LArallalGdldeArall 24 
                 LA  +    dld+A +ll
  EHU00740.1 186 LALQAMSSDDLDRAMTLL 203
                 666666667888887776 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.21
       TPR_4   2 rallaLArallalGdldeAraller 26 
                 r+ ++++r l + G++  A ++l+r
  EHU00740.1 215 RVSIMMGRILMEKGEYGKAVEHLQR 239
                 777899*****************87 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.022        16       6      33 ..      62      89 ..      57      90 .. 0.81
   2 ?   -1.0   0.0       4.4   3.2e+03      13      32 ..     180     199 ..     178     201 .. 0.82
   3 ?   -1.6   0.0       6.7   4.8e+03      19      30 ..     198     209 ..     196     215 .. 0.81
   4 ?    2.1   0.0      0.43   3.1e+02      14      34 .]     215     235 ..     207     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.022
      TPR_17  6 leldPnnadaynnLAelllknGdlmtAr 33
                l+ d   ++a+  L++l++++G+ ++A+
  EHU00740.1 62 LKEDSGTVEAHLTLGNLFRSRGEVDRAI 89
                555666689*****************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.4
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                 a +y++LA    +  dl++A
  EHU00740.1 180 AHFYCELALQAMSSDDLDRA 199
                 56799999988888888887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 6.7
      TPR_17  19 LAelllknGdlm 30 
                 +A +llk+G+ +
  EHU00740.1 198 RAMTLLKKGEAA 209
                 7999**999865 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.43
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                  +  +++++l ++G++++A++
  EHU00740.1 215 RVSIMMGRILMEKGEYGKAVE 235
                 555689************975 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00024      0.17      64      85 ..     346     374 ..     311     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00024
  zinc_ribbon_15  64 e.......kkeCknCgkeveeefkyCpkC 85 
                              ++C++Cg + ++ + +Cp+C
      EHU00740.1 346 GeqirtkpRYRCQKCGFTAHALYWHCPSC 374
                     0445556689******************* PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00055      0.39      66      95 ..     350     377 ..     314     387 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00055
                 EE--EEEETTTS-EEECHHHHHS-TTTSSS CS
        HypA  66 evpvkvrCreCgkefeleekalrCpkCgsa 95 
                 +++ ++rC++Cg + +      +Cp+C + 
  EHU00740.1 350 RTKPRYRCQKCGFTAHAL--YWHCPSCRTW 377
                 56889*******777754..358****875 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       6.9   4.9e+03       8      28 ..      82     102 ..      75     124 .. 0.56
   2 ?    8.4   0.3    0.0034       2.4       3      27 ..     149     173 ..     147     220 .. 0.86
   3 ?    5.9   0.1     0.019        14      36      60 ..     221     245 ..     190     257 .. 0.91
   4 ?   -1.1   0.0       3.1   2.2e+03       2      27 ..     289     314 ..     288     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.9
       TPR_9   8 eedweralavverllllaPdd 28 
                 + + +ra+++ ++l+  a+ +
  EHU00740.1  82 RGEVDRAIRIHQSLMESASLS 102
                 555666666666665544444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0034
       TPR_9   3 aiaireedweralavverllllaPd 27 
                  i++   dw +a++v+erl+ l  d
  EHU00740.1 149 LIHQATSDWLQAIEVAERLVKLGKD 173
                 699*****************99655 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.019
       TPR_9  36 GlllaqlGclsaAladLeaylalap 60 
                 G++l++ G + +A++ L++ l+++ 
  EHU00740.1 221 GRILMEKGEYGKAVEHLQRVLDQDK 245
                 899******************9985 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.1
       TPR_9   2 kaiaireedweralavverllllaPd 27 
                  ai+ +e+ +e+a  +++  l+ +P+
  EHU00740.1 289 SAILEQEQGAEAAQNYINHQLQRHPN 314
                 57889999999999999988888886 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.15   1.1e+02      17      29 ..      52      64 ..      52      66 .. 0.89
   2 ?   -0.5   0.0       2.7   1.9e+03      10      28 ..      79      97 ..      74      98 .. 0.78
   3 ?    5.6   0.1     0.031        22      10      26 ..     117     133 ..     115     136 .. 0.87
   4 ?   -1.8   0.0         7   5.1e+03      13      28 ..     331     346 ..     329     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.15
         PPR 17 eeAlelfkeMkek 29
                ++A++lf +M+++
  EHU00740.1 52 DKAVDLFLDMLKE 64
                79********997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.7
         PPR 10 ycknGkleeAlelfkeMke 28
                + + G+++ A+++++ + e
  EHU00740.1 79 FRSRGEVDRAIRIHQSLME 97
                66789******99987665 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.031
         PPR  10 ycknGkleeAlelfkeM 26 
                 y  +G+++ A+++fk++
  EHU00740.1 117 YMAAGLYDRAEDMFKQL 133
                 7789***********87 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 7
         PPR  13 nGkleeAlelfkeMke 28 
                  G+ +e l ++++++ 
  EHU00740.1 331 DGRAKESLMVLRDLVG 346
                 69999****9998876 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.3    0.0017       1.2       3      18 ..     353     368 ..     351     376 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
   zf-CCHC_3   3 asaaCQkClkkGHwtY 18 
                  + +CQkC+++ H  Y
  EHU00740.1 353 PRYRCQKCGFTAHALY 368
                 6789*********866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2487.62
//
Query:       EHU00741.1  [L=103]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-19   68.6   0.5    2.9e-19   68.6   0.5    2.0  2  LapA_dom   Lipopolysaccharide assembly protein A domain
     0.0077   16.2   2.5     0.0092   15.9   2.5    1.1  1  DsbD_2     Cytochrome C biogenesis protein transmembrane regi
  ------ inclusion threshold ------
      0.041   14.2   2.2      0.049   14.0   2.2    1.1  1  Tmemb_170  Putative transmembrane protein 170
      0.065   13.0   0.0      0.079   12.7   0.0    1.1  1  G6B        G6B family
      0.083   12.6   6.9      0.097   12.4   6.9    1.1  1  Yip1       Yip1 domain
       0.17   12.1   0.8        2.8    8.3   0.0    2.1  2  DUF948     Bacterial protein of unknown function (DUF948)
          4    7.4   8.1       0.88    9.5   1.1    2.1  2  DUF4389    Domain of unknown function (DUF4389)
        8.7    6.8   9.1       0.37   11.2   1.0    2.0  2  PhoR       Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   4.3         1   2.3e+03      20      34 ..       7      21 ..       3      22 .. 0.81
   2 !   68.6   0.5   1.3e-22   2.9e-19       2      63 ..      24      85 ..      23      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
    LapA_dom 20 sllllvafgiGallg 34
                 l++lv f+i + lg
  EHU00741.1  7 FLVVLVIFIISVTLG 21
                689999999999887 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 1.3e-22
    LapA_dom  2 NtqpVtvnflfaqvelpLsllllvafgiGallgwllslwsylrlrrelrrlkkkikklekel 63
                N+q++t+n+l+aq+++++s+ll+  fg+G+llgw+++ +++lr r  l ++++kik+l++++
  EHU00741.1 24 NDQVITFNYLLAQGDFRISTLLATLFGVGFLLGWVICGLFWLRVRVSLANAQRKIKRLQAQV 85
                ************************************************************98 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.5   4.1e-06    0.0092      74     145 ..       5      72 ..       1      77 [. 0.65

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
      DsbD_2  74 gvllgllllllglklllkkkllklerlgkllsrllkklakklkslasalllGllnGllpCglvysalllala 145
                  ++l++l+++ +++++l+++  ++ +++ ll++   +++     la+++++G+l G++ Cgl+++ + ++la
  EHU00741.1   5 LIFLVVLVIF-IISVTLGAHNDQVITFNYLLAQGDFRIST---LLATLFGVGFLLGWVICGLFWLRVRVSLA 72 
                 4455555444.55555555666666666555554444443...46799**************9987766665 PP

>> Tmemb_170  Putative transmembrane protein 170
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   2.2   2.2e-05     0.049      46      98 ..       7      61 ..       1      69 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
   Tmemb_170 46 ilillvgvlepltagaitsaviaavy..raaslemstlyalvwGvgqtillviis 98
                 l++lv +++++t ga    vi + y   ++++++stl a ++Gvg  +  vi++
  EHU00741.1  7 FLVVLVIFIISVTLGAHNDQVITFNYllAQGDFRISTLLATLFGVGFLLGWVICG 61
                45778899****************99556889**************999888876 PP

>> G6B  G6B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.5e-05     0.079     124     171 ..      42      89 ..      31     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
         G6B 124 sqllipllgaglalglgalGvawwlrrrsppallrplprfaplvkaea 171
                 s+ll +l g+g+ lg +  G+ w + r s+++ +r + r++ +v+++a
  EHU00741.1  42 STLLATLFGVGFLLGWVICGLFWLRVRVSLANAQRKIKRLQAQVDQNA 89 
                 7899********************99************9999887765 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.9   4.3e-05     0.097      22      83 ..       3      63 ..       1      74 [. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
        Yip1 22 pdlallllalltlllgllas.....lnlgqtlasgeevqgltlssllgaiiggylglllgllllall 83
                ++l++l+++++ +++++l++      ++   la+     +++ s+ll++++g  +  llg+++ +l+
  EHU00741.1  3 YLLIFLVVLVIFIISVTLGAhndqvITFNYLLAQ----GDFRISTLLATLFGVGF--LLGWVICGLF 63
                6899999999999999999976665444444444....48999******999999..6998887765 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.5     0.091     2e+02      10      22 ..       8      20 ..       5      31 .. 0.82
   2 ?    8.3   0.0    0.0012       2.8       5      44 ..      48      87 ..      42      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.091
      DUF948 10 FvvLviflivvll 22
                +vvLvif+i v l
  EHU00741.1  8 LVVLVIFIISVTL 20
                6899999998865 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0012
      DUF948  5 IaAiAFvvLviflivvllklkktldeaaatieelekqvdp 44
                ++ + F++  +++  + l+++  l +a++ i+ l+ qvd+
  EHU00741.1 48 LFGVGFLLGWVICGLFWLRVRVSLANAQRKIKRLQAQVDQ 87
                57899********************************996 PP

>> DUF4389  Domain of unknown function (DUF4389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   0.00039      0.88      23      50 ..       4      31 ..       2      43 .. 0.86
   2 ?    2.2   1.0     0.078   1.8e+02      17      51 ..      48      83 ..      39      87 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
     DUF4389 23 lvlwvvvvvqflivLvtgrpnepLrdfg 50
                l++++vv+v f+i + +g++n+++  f 
  EHU00741.1  4 LLIFLVVLVIFIISVTLGAHNDQVITFN 31
                57899999999999999******99885 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.078
     DUF4389 17 vlslaslvlwvvvvvqfl.ivLvtgrpnepLrdfgk 51
                ++++  l+ wv++ + +l +++ + + ++++ ++ +
  EHU00741.1 48 LFGVGFLLGWVICGLFWLrVRVSLANAQRKIKRLQA 83
                344444444444433333033333555555554444 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.7      0.41   9.1e+02       8      25 ..       5      22 ..       1      36 [. 0.58
   2 ?   11.2   1.0   0.00016      0.37       8      56 ..      40      89 ..      36      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.41
        PhoR  8 rlallllaallvgllvga 25
                +++l++l++ ++++ +ga
  EHU00741.1  5 LIFLVVLVIFIISVTLGA 22
                333444444466665554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00016
        PhoR  8 rlallllaallvgllvgalaalll.lalllllawhlyqllrLsrWLrkpk 56
                r+++ll+ +  vg+l+g +   l+ l + + la   ++++rL+   +++ 
  EHU00741.1 40 RISTLLATLFGVGFLLGWVICGLFwLRVRVSLANAQRKIKRLQAQVDQNA 89
                67888888889*********99999999999999*******987776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1366  (0.0761894); expected 358.6 (0.02)
Passed bias filter:                      915  (0.0510346); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 751.21
//
Query:       EHU00742.1  [L=254]
Description: phosphatidylglycerophosphatase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-27   94.9   1.5    3.3e-27   94.9   1.5    1.9  2  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4     0.092   1.6e+03      90      90 ..      44      44 ..       8      72 .. 0.47
   2 !   94.9   1.5   1.9e-31   3.3e-27       2     133 ..      79     232 ..      75     234 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.092
        PAP2 90 i 90
                +
  EHU00742.1 44 M 44
                1 PP

  == domain 2  score: 94.9 bits;  conditional E-value: 1.9e-31
        PAP2   2 llalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses..........................keakesfPSgHsafafalalllall 74 
                 ll++ +++++ ++++s++K  v++pRP++++ e+++  + +t++++++                           e++  fPSg ++fa+++all++ l
  EHU00742.1  79 LLIMNVTILAGQYTKSFIKERVQEPRPYVVWLEKTHGLDDKTFYQLNRtqrgervtaliadeshipvwlkkhwpFETGFAFPSGRTLFAASWALLVIGL 177
                 56788899999999********************************99************************9999999******************** PP

        PAP2  75 lrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqk 133
                 l+++r+      +++++ ++av+v+ sRl lg+H++ D+ ++++++++l+++a++l+q+
  EHU00742.1 178 LWPRRHY----KTIVLVGVWAVGVMGSRLLLGMHWPRDLAVATVLSWFLVVIATWLAQR 232
                 *******....89******************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1971.01
//
Query:       EHU00743.1  [L=197]
Description: GTP cyclohydrolase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-68  228.9   0.0    2.8e-68  228.6   0.0    1.0  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.6   0.0   1.6e-72   2.8e-68       2     163 .]       5     170 ..       4     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 228.6 bits;  conditional E-value: 1.6e-72
                      XEEEEEEEETTEEEEEEEE--.....EEEEEE-.........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHHHH-.EEEEEE--TTTTTHH CS
  GTP_cyclohydro2   2 rvaeaklptrfgefrliayedkvdgkehlalvkgdi....pvlvRvHsecltgDvlgslrcdcgeqldealeliaeegrGvlvylrqegrgigl 91 
                      rvaeaklpt +g+f ++++e+ ++g+ h+alv+gdi    pvl RvHsecltgD+l slrcdcg ql++al++iaeegrGvl+y rqegr+igl
       EHU00743.1   5 RVAEAKLPTPWGDFLMVGFEELATGHDHVALVFGDIndnePVLARVHSECLTGDALFSLRCDCGFQLEAALNAIAEEGRGVLLYHRQEGRNIGL 98 
                      777***********************************************************************99****************** PP

                      HHHHHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHCTT....SEEEE CS
  GTP_cyclohydro2  92 lnklkayalqdeglDTveanlalglpadardygiaaqILkdlgvkkirLlTnnpekveaLegfgievvervp 163
                      lnk++ayalqd+g+DTvean++lg++ad+rd++++a + k lgv+++rLlTnnp+kve L++ gi++vervp
       EHU00743.1  99 LNKIRAYALQDKGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPRKVEILSEAGINIVERVP 170
                      **********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1626.88
//
Query:       EHU00744.1  [L=893]
Description: aconitate hydratase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.9e-182  606.0   0.0   6.3e-182  605.7   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    7.1e-48  162.3   0.0    1.6e-47  161.1   0.0    1.6  2  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  605.7   0.0  7.1e-186  6.3e-182       4     461 .]      69     564 ..      61     564 .. 0.94

  Alignments for each domain:
  == domain 1  score: 605.7 bits;  conditional E-value: 7.1e-186
   Aconitase   4 wdahlveeegiayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsv.....gaeealeknledefernkeryefLksaakaf 97 
                 w+++ +++++iay p+rvl+qd+tgv+a+vdlaa+reav+rlgg+++++++l pvdlvidhsv     g+++a+e+n++ e+ern+ery fL++++kaf
  EHU00744.1  69 WQKTGHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVNRLGGDVNKVNPLSPVDLVIDHSVtvdhfGDDDAFEENVRLEMERNHERYVFLRWGQKAF 167
                 7766555566***************************************************************************************** PP

   Aconitase  98 .girvvppgqGIvHqvnlEy.............glalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtak 182
                  ++rvvppg+GI+HqvnlEy              +a+p+ t+vgtDSHTtmi++lGvl++GvGgieaea++lgqp+++ ip+vvg+kltGkl++g+ta+
  EHU00744.1 168 dQFRVVPPGTGICHQVNLEYlgkaiwqqqingeTYAWPD-TLVGTDSHTTMINALGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLRPGITAT 265
                 **************************99998655*****.*********************************************************** PP

   Aconitase 183 DlvlavigklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaav.lveaydkaqalfelaadedaeydkvl 280
                 Dlvl+v+++lrk+gvvgk+vEf+G+g+++L+l+draTiaNMa+E+GAt+g+fpvde tl+Y+++tgr++++v lve+y+k q++++ a d ++++++ l
  EHU00744.1 266 DLVLTVTQMLRKHGVVGKFVEFYGDGLADLPLADRATIANMAPEYGATCGFFPVDEVTLSYMTLTGRDAEQVaLVEHYAKRQGMWRNAGD-EPVFTSSL 363
                 ************************************************************************9************76666.67****** PP

   Aconitase 281 eldlstlepsvagpkrPqdavplselvkkefkeele.....keaaekaley...klkegtklkdgkvdiaaigSCTNssnedvraaaglla.kavekgl 370
                  ld++++e s+agpkrPqd+v+l ++v+++f+ ++e     +++ +k+++y   +++ +++l+dg+v iaai+SCTN+sn++v +aaglla kave+gl
  EHU00744.1 364 ALDMNDVESSLAGPKRPQDRVSL-GDVPAAFDASNElevnhAQKPHKEVTYtnsDTGLSHTLTDGAVAIAAITSCTNTSNPSVLMAAGLLAkKAVERGL 461
                 ***********************.777754544443447765556666777656666799*************************************** PP

   Aconitase 371 kvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrle........ege...aivsssNRNFegRqgpntra.yLaSPelvvaa 457
                 k +p+vk+s+aPGS+vv++yl  + l++ L+k+Gf++vg+gC+tCigns++l+        eg+    +v+s+NRNFegR++p  ++ +LaSP+lvva+
  EHU00744.1 462 KRQPWVKASLAPGSKVVSDYLAVAQLTPFLDKLGFNLVGYGCTTCIGNSGPLPdaiesaikEGDltvGAVLSGNRNFEGRIHPLIKTnWLASPPLVVAY 560
                 ****************************************************98998887666699899****************************** PP

   Aconitase 458 AlaG 461
                 AlaG
  EHU00744.1 561 ALAG 564
                 ***9 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.7   1.5e+04      51      70 ..     604     623 ..     599     628 .. 0.78
   2 !  161.1   0.0   1.8e-51   1.6e-47       3     130 ..     693     820 ..     691     821 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.7
                  EEETTTTEEEEHHHHHHHHH CS
  Aconitase_C  51 ttdlddgekedvvdaaeryk 70 
                  t d++ +e+ +v+d  ++++
   EHU00744.1 604 TSDMYHKEYAEVFDGTPEWQ 623
                  55667789999999999998 PP

  == domain 2  score: 161.1 bits;  conditional E-value: 1.8e-51
                  CCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHT CS
  Aconitase_C   3 kllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrll 100
                  ++l ++G++++d++s+++++++++++++gt+ani+++ne+v++++ + t++ ++ge+ +++daa++y+ eg +l viagk++G+GSSR++AAk++rl 
   EHU00744.1 693 RYLLAHGVERNDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGYTKHYPSGEQLAIYDAAMKYQAEGVPLAVIAGKEYGSGSSRDWAAKGPRLQ 790
                  688899******************************************************************************************** PP

                  TEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 101 GikaviaeSFerIfennliknglLplefke 130
                  G+++viaeSFerI+++nli++g+Lplef++
   EHU00744.1 791 GVRVVIAESFERIHRSNLIGMGILPLEFPQ 820
                  ****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 6919.87
//
Query:       EHU00745.1  [L=59]
Description: hypothetical protein CKS_2791 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 473.88
//
Query:       EHU00746.1  [L=52]
Description: hypothetical protein CKS_5753 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 482.83
//
Query:       EHU00747.1  [L=324]
Description: O-acetyl-L-serine-binding DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-41  140.4   0.0    6.6e-41  140.0   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    1.2e-15   57.2   0.0    2.1e-15   56.4   0.0    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   7.3e-45   6.6e-41       5     205 ..      92     292 ..      90     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 7.3e-45
                     CEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   5 rgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepvsl 98 
                     +g+L +++++t ary lp +++ f +ryP v+l++++g+++++++++ +g +D+ai+++ +   ++l+  p ++  + +v+ pdhpLa++ +v++
      EHU00747.1  92 KGSLYVATTHTQARYALPGVIKGFIERYPCVSLHMHQGSPTQIAEAVSKGNADFAIATEALhLYDDLIMLPCYHWNRAIVVTPDHPLAGKGQVTI 186
                     799******************************************************************************************** PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre 192
                     e+Lad+pl++++ g++ r +l+ a+ +agl+pr+++++++++ ++  v+ GlG++++ ++av d +ad++lv ++ +e  ++ +++ + +r++  
      EHU00747.1 187 EELADFPLVTYTFGFTGRSELDTAFMRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAV-DPVADPDLVRIEASE-IFTnSTTKIGFRRSTF 279
                     **************************************************************.55*******999999.7777************ PP

                     CHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflr 205
                     l++ + +fi+ ++
      EHU00747.1 280 LRSYMYDFIQRFA 292
                     *****99999876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   2.3e-19   2.1e-15       1      60 []       3      64 ..       3      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 2.3e-19
                HHHHHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.EEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.lrLTeaGe 60
                l+qlr+ v+v+ +  +++  Ae L++sqp +s+q++ LE+elgv++f R+g++ +++T+aGe
  EHU00747.1  3 LQQLRYIVEVVNHNlNVSSTAEGLYTSQPGISKQVRMLEDELGVQIFARSGKHlTQVTPAGE 64
                78***********************************************999989******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2601.04
//
Query:       EHU00748.1  [L=865]
Description: DNA topoisomerase I, omega subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.9e-129  431.3   2.5     7e-129  430.4   0.2    2.1  2  Topoisom_bac     DNA topoisomerase
    3.8e-39  132.1   0.2      9e-24   82.9   2.1    2.6  2  Topo_Zn_Ribbon   Topoisomerase I zinc-ribbon-like
    3.5e-33  113.9   0.1    8.7e-33  112.6   0.1    1.7  1  Toprim           Toprim domain
    2.2e-19   68.9  16.3    2.9e-11   42.9   2.1    4.5  4  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
  ------ inclusion threshold ------
      0.056   13.9   0.0       0.42   11.1   0.0    2.5  2  Toprim_4         Toprim domain
      0.097   13.1   0.0       0.35   11.3   0.0    1.9  1  Toprim_2         Toprim-like
       0.13   12.8  11.5        0.2   12.2   0.0    3.6  3  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
       0.41   10.7   4.7         19    5.3   4.7    2.6  1  DZR              Double zinc ribbon
        4.5    7.3   8.8        2.7    8.0   0.0    3.3  5  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
        7.4    6.6   7.7         51    4.0   0.4    3.6  3  YhfH             YhfH-like protein


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.4   0.2  3.9e-132    7e-129       2     413 .]     157     565 ..     156     565 .. 0.94
   2 ?    0.7   0.1      0.12   2.1e+02     252     295 ..     819     863 ..     812     865 .] 0.83

  Alignments for each domain:
  == domain 1  score: 430.4 bits;  conditional E-value: 3.9e-132
  Topoisom_bac   2 inenlvdaaeaRrelDwliGinlsrlltkklkgkkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke....kkkkkkkerikdk 94 
                   +n + v+a++aRr +D+++G+ +s+ll+kk+   + lsaGRVq+++++l+veRerei++Fvpeeywe++a+l++ k+ +      ++ +k  r  ++
    EHU00748.1 157 LNIDRVNAQQARRFMDRVVGYMVSPLLWKKIA--RGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELSANLTTPKGDELtmdvTHAGDKPFRPVNH 251
                   68899************************999..9************************************9555555546889999999999999* PP

  Topoisom_bac  95 eeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlseeaelkailealakkygke 191
                   ++  a+l+ l+k ++ v++ e+k ++++p  pf t+tLq++as++lg++ kkt+++aq+LYe  g+itY+RTdst+ls++a ++ ++ +++ ++gk+
    EHU00748.1 252 DQTHAALALLEKARFAVTDREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA-GHITYMRTDSTNLSQDA-VSMVRGYIEGHFGKK 346
                   **********8879************************************************5.*****************.9************** PP

  Topoisom_bac 192 ylefaekllkktkkksvvknkkveaHeAIrPteelp....klkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktilekGfk 284
                   yl+ a++++++ k     +n++ eaHeAIrP  +++    +lk+ + d +klY+lI+r+f+a++m++a+y++tt++++++++++ka+g+t+ ++G++
    EHU00748.1 347 YLPDAANTFAS-K-----ENSQ-EAHEAIRPS-DVEvlaeQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVTAGDYKLKAKGRTLRFDGWT 435
                   *******9984.3.....3788.9*******9.767554333666699999********************************************** PP

  Topoisom_bac 285 kvykeekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaTraeiieklvergYverkkkslvptelGkalvell.e 380
                   kv++  +k++e+++lp++++g+e++++++  ++++Tkpp+r++easL++++ek+giG+p+T+a+ii+++++rgYv+++++++++ ++G+ +++ l e
    EHU00748.1 436 KVMPALRKNDEDRTLPPVNVGDELSLQDLLPSQHFTKPPARFSEASLVRELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLeE 532
                   ***9998888878****************************************************************99****************88 PP

  Topoisom_bac 381 kfkdlvspelTaeleekLdeIaegkadakevld 413
                   +f +l+++++Ta++e++Ld++a+++a++k+vld
    EHU00748.1 533 NFRELMNYDFTAHMENSLDQVANNQAEWKAVLD 565
                   89****************************986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.12
  Topoisom_bac 252 mkdakyeettvklev.eeeefkasgktilekGfkkvykeekkeee 295
                   ++d + ++t v+++  +++++ as k  +  G+ ++y + k++e 
    EHU00748.1 819 ATDPEGNKTLVRFSRkTKQQYVASEKDGKATGWSAFYIDGKWQEA 863
                   56788999999997657899*****************88887765 PP

>> Topo_Zn_Ribbon  Topoisomerase I zinc-ribbon-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.8e-15   6.8e-12       2      41 .]     758     793 ..     757     793 .. 0.97
   2 !   82.9   2.1     5e-27     9e-24       1      40 [.     824     863 ..     824     864 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 3.8e-15
  Topo_Zn_Ribbon   2 npalvRFSrKtkeqYVlsEkdGKaTgWlAayidgKwretr 41 
                     +p+l   ++K+++++Vl+  dG+a+ +lAa++++K+retr
      EHU00748.1 758 LPELP--CEKSDAYFVLR--DGAAGVFLAANTFPKSRETR 793
                     799**..***********..******************97 PP

  == domain 2  score: 82.9 bits;  conditional E-value: 5e-27
  Topo_Zn_Ribbon   1 gnpalvRFSrKtkeqYVlsEkdGKaTgWlAayidgKwret 40 
                     gn++lvRFSrKtk+qYV+sEkdGKaTgW+A+yidgKw+e 
      EHU00748.1 824 GNKTLVRFSRKTKQQYVASEKDGKATGWSAFYIDGKWQEA 863
                     8*************************************95 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.1   4.9e-36   8.7e-33       2     103 .]       5     142 ..       4     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 4.9e-36
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS......................................TTEEEEEECTTTHHHHHHHHHHHHH CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildlet......................................efkpvyeeiedkkkvlkalkelakr 62 
                 lvivE+p++akti+k+lg ++++v++s+Ghi+dl+t                                       +++ y+++++k+kv+++lk la++
  EHU00748.1   5 LVIVESPAKAKTINKYLG-SGYVVKSSVGHIRDLPTsgstakksaetptdkkakkvkkdekaalvsrmgvdpyhGWEADYQILPNKEKVVAELKALAEN 102
                 9*****************.******************************************************************************** PP

                 HSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEESSS CS
      Toprim  63 adeiilatDpDreGeaiawellevlkellenkigrvefsei 103
                 ad+i+latD DreGeaiaw+l+ev++ +++++++rv+f+ei
  EHU00748.1 103 ADHIYLATDLDREGEAIAWHLREVIG-GDDKRFSRVVFNEI 142
                 **************************.99999*******98 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.5   8.4e-09   1.5e-05       2      27 ..     597     622 ..     596     636 .. 0.91
   2 ?    3.7   1.1     0.029        52       2      31 ..     660     690 ..     659     694 .. 0.91
   3 !   42.9   2.1   1.6e-14   2.9e-11       1      39 []     708     745 ..     708     745 .. 0.93
   4 ?    4.2   0.0     0.021        38       4      31 ..     763     790 ..     762     795 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.4e-09
                     EE-SSS--EEEEEE-SSSEEEEESST CS
  zf-C4_Topoisom   2 ekCPkCggdLvlkrgkkGkFvGCsnY 27 
                     ++CP Cg ++ +++   G F+GCs Y
      EHU00748.1 597 IDCPTCGRKMGIRTASTGVFLGCSGY 622
                     58***********************9 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.029
                     EE-SSS--EEEEEE-SSS.EEEEESST.T-- CS
  zf-C4_Topoisom   2 ekCPkCggdLvlkrgkkG.kFvGCsnYPeCk 31 
                     + C kCg  +      +G k + C n PeC+
      EHU00748.1 660 RRCQKCGTAMDSYLIDNGrKLHVCGNNPECD 690
                     57********99999999999*********7 PP

  == domain 3  score: 42.9 bits;  conditional E-value: 1.6e-14
                     -EE-SSS--EEEEEE-SSSEEEEESST.T----EEB-GG CS
  zf-C4_Topoisom   1 vekCPkCggdLvlkrgkkGkFvGCsnYPeCkftkklkkn 39 
                     v++C+kCg++++lk+g++Gk+++C+n  +Ck+t+k+ +n
      EHU00748.1 708 VVECEKCGSEMHLKMGRFGKYMACTND-DCKNTRKILRN 745
                     579***********************6.*******9775 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.021
                     -SSS--EEEEEE-SSSEEEEESST.T-- CS
  zf-C4_Topoisom   4 CPkCggdLvlkrgkkGkFvGCsnYPeCk 31 
                     C+k  +  vl+ g  G F++ + +P+ +
      EHU00748.1 763 CEKSDAYFVLRDGAAGVFLAANTFPKSR 790
                     677677789****************965 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.8   3.3e+03       2      31 ..       4      34 ..       3      61 .. 0.69
   2 ?   11.1   0.0   0.00024      0.42      39      81 ..      87     130 ..      79     138 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.8
    Toprim_4  2 eiiiVEgyaDvlaleka.giknvvavlggal 31
                +++iVE++a +  + k+ g   vv +  g +
  EHU00748.1  4 ALVIVESPAKAKTINKYlGSGYVVKSSVGHI 34
                6899**9999999999888777777655555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00024
    Toprim_4  39 peklkt.enlveaekkvkevilaldgDaeGeataerlaelllee 81 
                 p k k   +l++  ++++ ++la+d D eGea a +l e ++  
  EHU00748.1  87 PNKEKVvAELKALAENADHIYLATDLDREGEAIAWHLREVIGGD 130
                 44444444555556677*****************9998855444 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.35      17      68 ..      61     127 ..      54     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
    Toprim_2  17 ikektnvvalgGt.alte...............aalkllerypekkvvlalDnDkaGrkaakrlaell 68 
                 ++ek ++v+ +G+ +++                a lk l+++ +++++la+D D+ G++ a  l+e++
  EHU00748.1  61 KDEKAALVSRMGVdPYHGweadyqilpnkekvvAELKALAEN-ADHIYLATDLDREGEAIAWHLREVI 127
                 444778888888853333666777788888777888888888.677**************99998876 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011       0.2       8      52 ..     599     645 ..     597     649 .. 0.85
   2 ?    1.3   0.9      0.29   5.2e+02       7      17 ..     661     671 ..     656     695 .. 0.77
   3 ?    2.9   2.2     0.088   1.6e+02       6      32 ..     709     739 ..     708     746 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
  Zn_ribbon_recom   8 CgeCGspmtrrkrkgkrhyYrCstyrrkgk.kCsnh..sireekleea 52 
                      C  CG++m  r++ +      Cs+y    k +C+++   i+e+++ ++
       EHU00748.1 599 CPTCGRKMGIRTA-STGVFLGCSGYALPPKeRCKQTinLIPENEVLNI 645
                      ***********99.67799******9888756*999888898888776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
  Zn_ribbon_recom   7 rCgeCGspmtr 17 
                      rC +CG +m  
       EHU00748.1 661 RCQKCGTAMDS 671
                      8*******954 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.088
  Zn_ribbon_recom   6 lrCgeCGspmtrrkrk.gkr...hyYrCsty 32 
                      + C +CGs m+ +  + gk+       C+++
       EHU00748.1 709 VECEKCGSEMHLKMGRfGKYmacTNDDCKNT 739
                      56**********9887777754433455555 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   4.7     0.011        19      12      40 ..     659     720 ..     573     733 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
         DZR  12 arfCseCgtklkavaa.................................edrCpsCgekvdp 40 
                  r C++Cgt+++++                                      C +Cg+++++
  EHU00748.1 659 RRRCQKCGTAMDSYLIdngrklhvcgnnpecdgyeieegefrikgydgpVVECEKCGSEMHL 720
                 34788888888766557778888888888888888888888888888888888888887765 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0015       2.7      21      39 ..     588     607 ..     568     619 .. 0.68
   2 ?    0.0   0.1      0.46   8.3e+02      46      57 ..     659     670 ..     650     674 .. 0.77
   3 ?    0.3   0.6      0.38   6.8e+02      30      50 ..     661     684 ..     660     693 .. 0.71
   4 ?    1.0   0.3      0.23   4.2e+02      43      57 ..     705     719 ..     687     722 .. 0.77
   5 ?    0.4   1.0      0.35   6.3e+02      30      51 ..     710     733 ..     708     740 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
  OrfB_Zn_ribbon  21 evnpay.TSktCseCgsknk 39 
                     + n+   TS +C+ Cg+k+ 
      EHU00748.1 588 QPNQMVlTSIDCPTCGRKMG 607
                     5556666*********9975 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.46
  OrfB_Zn_ribbon  46 tfkCpnCgfead 57 
                     + +C++Cg+ +d
      EHU00748.1 659 RRRCQKCGTAMD 670
                     568999998776 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.38
  OrfB_Zn_ribbon  30 tCseCgsknke...alsgrtfkCp 50 
                     +C +Cg  ++    ++ +++++C 
      EHU00748.1 661 RCQKCGTAMDSyliDNGRKLHVCG 684
                     688888888877766666667775 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.23
  OrfB_Zn_ribbon  43 sgrtfkCpnCgfead 57 
                     +g +++C++Cg e++
      EHU00748.1 705 DGPVVECEKCGSEMH 719
                     566788999998876 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.35
  OrfB_Zn_ribbon  30 tCseCgsknke..alsgrtfkCpn 51 
                     +C +Cgs++     + g+ + C+n
      EHU00748.1 710 ECEKCGSEMHLkmGRFGKYMACTN 733
                     677888777665566666666665 PP

>> YhfH  YhfH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.16   2.8e+02      16      23 ..     599     606 ..     595     608 .. 0.91
   2 ?    3.0   0.1     0.058     1e+02      15      24 ..     661     670 ..     659     672 .. 0.87
   3 ?    4.0   0.4     0.029        51      15      24 ..     710     719 ..     707     721 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
        YhfH  16 CteCGkei 23 
                 C++CG ++
  EHU00748.1 599 CPTCGRKM 606
                 *****998 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.058
        YhfH  15 kCteCGkeie 24 
                  C++CG  ++
  EHU00748.1 661 RCQKCGTAMD 670
                 6******997 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.029
        YhfH  15 kCteCGkeie 24 
                 +C +CG+e++
  EHU00748.1 710 ECEKCGSEMH 719
                 8*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6302.93
//
Query:       EHU00749.1  [L=82]
Description: uncharacterized DUF2498 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-35  121.4   0.0    1.1e-35  121.3   0.0    1.0  1  DUF2498   Protein of unknown function (DUF2498)


Domain annotation for each model (and alignments):
>> DUF2498  Protein of unknown function (DUF2498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.0   6.3e-40   1.1e-35       3      78 ..       6      81 ..       4      82 .] 0.97

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 6.3e-40
     DUF2498  3 kaiereaLLeeanklikehedyleGmeatdveqkedvLvFkGeyfldeqglPtekttavFnmfkyLahelsekytl 78
                + ++ +aLL +an +++eh+d+++G+eat v q++dvLvFkG yfld +glPt+kttavFn+fk+La  ls +y+l
  EHU00749.1  6 EGVSSQALLDIANAMLREHDDFIAGIEATAVSQQGDVLVFKGPYFLDTEGLPTAKTTAVFNLFKHLAVLLSPRYHL 81
                66899**********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 648.12
//
Query:       EHU00750.1  [L=348]
Description: putative inner membrane peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-60  203.1   0.8    3.7e-60  202.4   0.8    1.3  1  Peptidase_S49_N  Peptidase family S49 N-terminal
    3.5e-45  153.7   0.0    6.9e-45  152.7   0.0    1.4  1  Peptidase_S49    Peptidase family S49
      0.007   15.4   0.1      0.012   14.7   0.1    1.3  1  SDH_sah          Serine dehydrogenase proteinase
  ------ inclusion threshold ------
       0.09   13.0   3.2      0.093   12.9   0.2    2.5  3  Metal_resist     Heavy-metal resistance
      0.092   12.9   4.3       0.32   11.2   4.3    1.9  1  UPF0239          Uncharacterised protein family (UPF0239)
        1.7    8.9   7.9       0.92    9.7   0.1    2.5  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin


Domain annotation for each model (and alignments):
>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.4   0.8   1.2e-63   3.7e-60       1     153 []       2     157 ..       2     157 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.4 bits;  conditional E-value: 1.2e-63
  Peptidase_S49_N   1 eflleyglFlaklvtlvvailvvvvlivalaakkkkekgelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkaekkkake... 91 
                      ++ll+yglFlak+vt+vvai+++v+++v++a++k++  g+l++t+L+++y+++ke+l+ + ++ +++k + k++kk+ek+++kaek++ak+   
       EHU00750.1   2 DLLLSYGLFLAKAVTVVVAIAAIVMIVVHAAQRKRHPGGQLRLTRLDDDYNKMKEALQLEKMKPQAQKLWLKNHKKAEKQKAKAEKRDAKQgnv 95 
                      5799************************************************************************************999999 PP

  Peptidase_S49_N  92 eeekkrvfvldFkGdikAsevesLreeitavLsvakpeDevllrLesgGGvVhgYGlaasqL 153
                      ++ k++++vl+F+G+i+Asev+sLreei+a+L+va+p+DevllrLes+GG+VhgYGlaasqL
       EHU00750.1  96 DTVKPTLYVLNFNGSIDASEVKSLREEISAILAVAQPGDEVLLRLESPGGMVHGYGLAASQL 157
                      99***********************************************************9 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0   2.3e-48   6.9e-45       2     146 ..     160     302 ..     159     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 2.3e-48
                    HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHH CS
  Peptidase_S49   2 akkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyq 97 
                    +++a+  ++a +++vaaSggY++a++a++iva+p++++gsiGv++q++n+++ll++ +++v++++aG+yk++++l+ e+tee re++q+ l+et+ 
     EHU00750.1 160 LRDAGLNLTAAVDKVAASGGYMMACVANTIVAAPFAVIGSIGVVAQIPNFNRLLKRNDIDVELHTAGQYKRTLTLFGENTEEGREKFQQDLNETHL 255
                    57889999**************************************************************************************** PP

                    HHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHH CS
  Peptidase_S49  98 qFvqtVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvddavae 146
                     F+q+V ++R  ++ ++d +A+g++++g+qAl lgL+d+++t+dd++  
     EHU00750.1 256 LFKQFVHEMR--PSLDIDRVATGEHWYGRQALGLGLIDRISTSDDLIIA 302
                    **********..9********************************8754 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     4e-06     0.012      94     156 ..     136     201 ..     115     219 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-06
     SDH_sah  94 idliihtpGGlv....laatqiakalkehkaktrvivphyamsGGtlialaadeiildenavlGpvd 156
                 + l + +pGG+v    laa q+   l++   + +  v + a sGG ++a  a+ i+  + av+G + 
  EHU00750.1 136 VLLRLESPGGMVhgygLAASQLQ-RLRDAGLNLTAAVDKVAASGGYMMACVANTIVAAPFAVIGSIG 201
                 44667889998766668999985.5999999*********************************864 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.1e-05     0.093       1      71 [.      15      87 ..      15      95 .. 0.80
   2 ?   -1.8   0.0       1.1   3.3e+03      91     111 ..     154     174 ..     147     178 .. 0.72
   3 ?   -1.6   0.0         1     3e+03      45      70 ..     240     265 ..     237     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
                  ...XXXXXXXXXXXXXXXXXXXXXXXTTHHBH..HHHHHHHS-TTHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  1 vsLalNlfllGalvgaalrgpggpppggparg.raellraalgLpaeqra.elraalrdharelralrrelra 71
                  v+++++++++ ++v++a ++ ++p+++ +  + +++++ + ++L  e+ + ++++++ + +++++++ + +++
    EHU00750.1 15 VTVVVAIAAIVMIVVHAAQRKRHPGGQLRLTRlDDDYNKMKEALQLEKMKpQAQKLWLKNHKKAEKQKAKAEK 87
                  57999999999999999999999999988777*9999999999988775547788888888777777776665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                   HHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  91 eaalaeiraaqaalraqieea 111
                   +++l+++r+a  +l a++++ 
    EHU00750.1 154 ASQLQRLRDAGLNLTAAVDKV 174
                   566777777777777776665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
                   HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  45 aeqraelraalrdharelralrrelr 70 
                   +e r+++++ l++ +  +    +e+r
    EHU00750.1 240 EEGREKFQQDLNETHLLFKQFVHEMR 265
                   78899999999999988888887777 PP

>> UPF0239  Uncharacterised protein family (UPF0239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.3   0.00011      0.32      17      86 ..       1      81 [.       1      92 [. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
     UPF0239 17 lelllrYGLflG.AifqlvCilAiillpsskseesveeeaessee.........ksseqvkkpkaaaaqr.lkkikKeeKK 86
                ++lll YGLfl  A+  +v i+Ai+++ ++  + + ++  +   +         k++ q +k k +a++  lk  kK eK 
  EHU00750.1  1 MDLLLSYGLFLAkAVTVVVAIAAIVMIVVHAAQRKRHPGGQLRLTrldddynkmKEALQLEKMKPQAQKLwLKNHKKAEKQ 81
                5789******97588899999999988888777766655443333011113322333344444544444314555556665 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   3.4      0.17     5e+02      21      75 ..      44      97 ..      41     128 .. 0.84
   2 ?    9.7   0.1   0.00031      0.92      78     115 .]     226     264 ..     218     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
  TMF_TATA_bd 21 irrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekelee 75
                 + rl+ +++++ke l +le+ + +a++  +k  k+ e++k+++++ +  + +++ 
   EHU00750.1 44 LTRLDDDYNKMKEAL-QLEKMKPQAQKLWLKNHKKAEKQKAKAEKRDAKQGNVDT 97
                 678888888888776.69***************9999999999988877776665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00031
  TMF_TATA_bd  78 eryetlLellGeksEeveE.LraDvaDlKemykeqveql 115
                   +y+ +L+l+Ge +Ee  E  ++D+++   ++k+ v ++
   EHU00750.1 226 GQYKRTLTLFGENTEEGREkFQQDLNETHLLFKQFVHEM 264
                  5799*********99976649******999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2682.20
//
Query:       EHU00751.1  [L=253]
Description: putative oxoacyl-(acyl carrier protein) reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-50  170.5   0.0    3.2e-50  170.3   0.0    1.0  1  adh_short        short chain dehydrogenase
    1.9e-40  138.9   0.0    4.1e-40  137.8   0.0    1.5  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.1e-17   63.1   0.1      4e-17   62.7   0.1    1.1  1  KR               KR domain
    0.00083   18.9   0.3      0.023   14.2   0.3    2.1  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.04   13.1   0.0      0.049   12.7   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.045   13.1   0.0      0.051   13.0   0.0    1.2  1  DUF1776          Fungal family of unknown function (DUF1776)
       0.11   12.1   0.0       0.13   11.9   0.0    1.2  1  CHASE2           CHASE2 domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   0.0   1.2e-53   3.2e-50       2     194 ..      14     210 ..      13     211 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 1.2e-53
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTT..SHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvt..dreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 ++lvtGas+GIGr+ a ++a+ Ga+v++++rs+ekl+++ + ++++ ++ a+ + +D++  + +++ +l ++ ++ + +ld + +NA+i  + +p ++l
  EHU00751.1  14 IILVTGASDGIGREAALTYARFGAEVILLGRSAEKLQQTEALINQLnKRPAHSVVLDLSdaTPARCAQLAQELAQTFSRLDGVLHNASIlGEIVPLADL 112
                 89********************************************8999*********4456899***********************9999****** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 + + w++v+++N+ ++f lt+a+lp +lk++sG+ v+++S +g+ + ag+ aY+ sK+a +g+++ la+e++++  rvn+++PG+++T+m++++ ++e
  EHU00751.1 113 DPQIWQQVMKINVDATFYLTQALLPLLLKSESGSLVFTTSSVGRTGRAGWGAYAVSKFATEGMMQVLADEYKNQALRVNCINPGGTRTKMRASAFPQE 210
                 *******************************************************************************************9987765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   1.6e-43   4.1e-40       1     226 [.      19     240 ..      19     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 1.6e-43
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTS..HHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtd..eeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Ga  gIGr++A ++a+ Gaev+l  ++ e+ +++e+l ++l+++ +  + +D +d  ++ +++l++e++++f +lD++++na i  +   p+++++ 
    EHU00751.1  19 GASDGIGREAALTYARFGAEVILLGRSAEKLQQTEALINQLNKRpAhsVVLDLSDatPARCAQLAQELAQTFSRLDGVLHNASILGE-IVPLADLDP 114
                   899***************************************776567999*99833578***************************.********* PP

                   HHHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfd 186
                   + +++++++n+ ++f+l++a+lp l+k++ gs+v ++s  ++ + ++  ay+++K a e++++ lA e+ ++  RvN++ pg ++T++ as++++  
    EHU00751.1 115 QIWQQVMKINVDATFYLTQALLPlLLKSEsGSLVFTTSSVGRTGRAGWGAYAVSKFATEGMMQVLADEYKNQALRVNCINPGGTRTKMrASAFPQ-- 209
                   ***********************7555447**********************************************************5555542.. PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEE CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqt 226
                               g+l tp ++  ++l+L+ d+++  tG  
    EHU00751.1 210 ---------EDAGKLKTPADIMPLYLYLMGDDSRRKTGMS 240
                   .........2346777899999999999999998888865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.1   1.6e-20     4e-17       3     174 ..      15     194 ..      14     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.6e-20
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-------.--TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrd.klleem 100
                  l+tG+  g+G+e a + a+ ga+ ++ll+Rsa++ ++ +ali++l+++ a+  v+++  + ++  ++l +e+ ++++++ Gv+h A +l +  +l+++
  EHU00751.1  15 ILVTGASDGIGREAALTYARFGAE-VILLGRSAEKLQQTEALINQLNKRPAHSVVLDLSDATPARCAQLAQELAQTFSRLDGVLHNASILGEiVPLADL 112
                 59***************9999986.7899********************999888888889999*************************985279**** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHH....HHHHHHHHHHHHHHHHHHTEEEEE CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYa....aaNaflDalaeyrrsqglpavsin 174
                 + + ++qv++  v+++  L ++l +    ++   +v+++S  g +g ag ++Ya    a+  ++  la++ ++q+l++ +in
  EHU00751.1 113 DPQIWQQVMKINVDATFYLTQALLPlllkSESGSLVFTTSSVGRTGRAGWGAYAvskfATEGMMQVLADEYKNQALRVNCIN 194
                 *********************998877667888999999999***********93333445556666666666666666665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3     9e-06     0.023       1     176 [.      15     199 ..      15     218 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HH.........HHHHHHHHH.T-SEEEE--S.---HHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrs.........alerlfkee.qpdavihlAa.vggvaa 79 
                 ilVtGa+  iG+  +   ++ g evi l r   a++ ++ e l         + v ldl d++         +l++    + + d v+h A   g +  
  EHU00751.1  15 ILVTGASDGIGREAALTYARFGAEVILLGRS--AEKLQQTEALinqlnkrpaHSVVLDLSDATparcaqlaqELAQT---FsRLDGVLHNASiLGEIVP 108
                 8999999999999999999999999999998..55555555557778999998888999998888777533333333...3599999999998777644 PP

                 HHHSH....HHHHHHHTHHHHHHHHHHH....HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEES CS
   Epimerase  80 ssedp....adfieknlqgtlnlleaar....kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlf 170
                  ++      ++++++n+  t  l +a+     k++   l+f  S    G+  +            +   +Ya++K a e +++ +a++y+ +a+ +++ 
  EHU00751.1 109 LADLDpqiwQQVMKINVDATFYLTQALLplllKSESGSLVFTTS--SVGRTGR------------AGWGAYAVSKFATEGMMQVLADEYKNQALRVNCI 193
                 33333011145666666666666666653333333335555544..3444444............34589***************************** PP

                 EEESTT CS
   Epimerase 171 nlyGpr 176
                 n  G r
  EHU00751.1 194 NPGGTR 199
                 *99999 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.9e-05     0.049       1     114 [.      15     134 ..      15     196 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-......HHHHHHHTT..T-SEEEE----. CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrd......kerlekaleelkvdvvfhaAAl. 87 
                      +lvtGa+  iG+e   + +++ ++ +ill r+  kl++ e  ++ +l+k+    ++v  + d +       +++l+++++  + d v+h A + 
       EHU00751.1  15 ILVTGASDGIGREAALTYARFGAE-VILLGRSAEKLQQTEALIN-QLNKRPA-HSVVLDLSDATParcaqlAQELAQTFS--RLDGVLHNASIl 103
                      89****************999976.5566666666666666543.3333222.233344444432111001344444555..889999999974 PP

                      .--HHHHHHSH...HHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  88 .KhVPlveenp...leaiktNvlgtenviea 114
                         VPl++  p    +++k Nv +t  + +a
       EHU00751.1 104 gEIVPLADLDPqiwQQVMKINVDATFYLTQA 134
                      4679999875422257788888887666655 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     2e-05     0.051      91     196 ..      92     194 ..      14     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
     DUF1776  91 rLkgvilvPslsyptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphn 189
                 rL gv+   s    + p++ + ++ w+++++ ++ +++ ++qallpll +    ++  +v+++s +     +  +  a+   a + +++vL+ e+++++
  EHU00751.1  92 RLDGVLHNASILGEIVPLADLDPQIWQQVMKINVDATFYLTQALLPLLLK---SESGSLVFTTSSVGRTGRAGWGAYAVSKFATEGMMQVLADEYKNQA 187
                 66666666666667889*******************************97...5667777777777777777777778888888999999999999999 PP

     DUF1776 190 idvtqik 196
                 + v +i+
  EHU00751.1 188 LRVNCIN 194
                 9998887 PP

>> CHASE2  CHASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.2e-05      0.13      57     127 ..      53     129 ..      38     232 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.2e-05
      CHASE2  57 arllerLeaagakaiglDilfsepeey...dealaealakgpnvvpaaaglGfvnvvpDaDgvvRrpll.vese..l 127
                  +l+++L++  a  ++lD+  ++p +     ++la+++++ + v+ +a+ lG +   +D D  + ++++ ++++  +
  EHU00751.1  53 EALINQLNKRPAHSVVLDLSDATPARCaqlAQELAQTFSRLDGVLHNASILGEIVPLADLDPQIWQQVMkINVDatF 129
                 689****************5555544256777777777776667666777777777777777666655555555542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1725.57
//
Query:       EHU00752.1  [L=196]
Description: cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-59  199.7   0.0    5.3e-59  199.3   0.0    1.1  1  CobA_CobO_BtuR   ATP:corrinoid adenosyltransferase BtuR/CobO/
      5e-07   29.5   5.3    1.1e-06   28.4   5.3    1.6  1  Co_AT_N          Cob(I)alamin adenosyltransferase N terminal
  ------ inclusion threshold ------
       0.13   12.5   0.1       0.46   10.8   0.0    1.9  2  Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like


Domain annotation for each model (and alignments):
>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   0.0     9e-63   5.3e-59       2     172 .]      28     196 .]      27     196 .] 0.99

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 9e-63
  CobA_CobO_BtuR   2 kglihvytGdGKGKttAAlGlalRalgaglkvlvvqFlKgekesgElaalkkleielerlgkegfvkmeeeekeedaaaakealekakealasee 96 
                     +g+++v+tG+GKGKt AA+G+alRa+g+g++ + +qF+Kge+  gE+++l++ ++e++ +  +gf+ +e++++++d+aa+ + +e+a+++l++++
      EHU00752.1  28 RGILMVFTGNGKGKTIAAFGTALRACGHGKRAAAIQFIKGEWPNGERNLLARHGVEFQVMA-TGFT-WETQNRQTDTAACLAVWEHARRMLSDDT 120
                     6999****************************************************99999.99**.**************************** PP

  CobA_CobO_BtuR  97 ydlvvlDEinyalklglldeeevlellkkkpeklelvlTGrnapeelleaADlvtemkkvkHpydkgikarkGiey 172
                     +dlv+lDEi+y++++++l+ +e++++l+ +p+++ ++lTGr+++++ll++AD+vtem++vkH++d+gika++Gi++
      EHU00752.1 121 LDLVILDEITYMISMDYLPLDELVTALQGRPAHQSVILTGRGCHRTLLDMADTVTEMRPVKHAFDAGIKAQQGIDW 196
                     **************************************************************************98 PP

>> Co_AT_N  Cob(I)alamin adenosyltransferase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   5.3   1.8e-10   1.1e-06       8      25 .]       4      21 ..       1      21 [. 0.93

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.8e-10
     Co_AT_N  8 eRHrqrMQRrKevqDari 25
                +RH+qr+QR+Ke++Dari
  EHU00752.1  4 DRHQQRQQRLKEQVDARI 21
                79***************9 PP

>> Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.8e-05      0.46      49      95 ..       5      50 ..       1      63 [. 0.77
   2 ?   -1.5   0.0      0.52   3.1e+03      55      76 ..      85     108 ..      74     133 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
                     HHHHH.....HHHHHHHHHHHH-SEEEEEE-TT--.-HHHHHHHHHHT CS
  Nuc_deoxyri_tr2 49 eedrskkrfreqvewelealekAdvvvfvfdgeds.atrslvElglaa 95
                     +++++++r +eqv+   +a ++++ +++vf+g+ + +  ++  +g+a 
       EHU00752.1  5 RHQQRQQRLKEQVDARIAAAQQVRGILMVFTGNGKgK--TIAAFGTAL 50
                     56788999************************55534..555555544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.52
                      ....HHHHHHHHHHHH..-SEEEE CS
  Nuc_deoxyri_tr2  55 krfreqvewelealek..Advvvf 76 
                      + + + + we +  ++  A  + +
       EHU00752.1  85 QVMATGFTWETQNRQTdtAACLAV 108
                      555566666666553321444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1453.33
//
Query:       EHU00753.1  [L=437]
Description: putative citrate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-49  166.8  56.1    2.3e-48  165.0  50.8    2.7  2  CitMHS           Citrate transporter
    3.1e-09   36.5  39.7    1.3e-06   27.9  19.5    2.3  2  Na_H_antiporter  Na+/H+ antiporter family
  ------ inclusion threshold ------
        1.3    9.5   3.1         18    5.8   0.0    3.2  3  DUF3357          Domain of unknown function (DUF3357)


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0  50.8   3.8e-52   2.3e-48       1     300 []      13     380 ..      13     380 .. 0.91
   2 ?   -0.6   0.2       0.1   6.1e+02     192     225 ..     406     430 ..     386     432 .. 0.70

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 3.8e-52
                 xxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   1 lvllileklrldvvallvlvll.......vltieealsgiaspii..........llllgamiigaaleetGlfdrlaakllrlaggkrdllvllvllt 82 
                 +++li++k++++++al+++ +l                g++  ++          ++l + ++++++++++Glfd+l++++l++++g  d ++++ ++t
  EHU00753.1  13 FMYLIMTKRMSALIALILIPTLfaliggfY-------HGLGEMMLngvktlaptgVMLTFSILYFGLMIDAGLFDPLVRFILKIVRG--D-PLKVLVGT 101
                 799*************76666644433331.......333333335555555555********************************..6.88****** PP

                 xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
      CitMHS  83 allsafvsndgv....vlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa.................................... 141
                 a+l+ +vs+dg+     +i i+++l+l+++l+++++++++++ la++i++ l+p+G+pt+raa                                    
  EHU00753.1 102 AVLTLLVSLDGDssttYMIAIAAFLPLYRKLGMNVLAMTCLVNLASGIMN-LSPWGGPTARAAaalridaldifipmlpailiacvalvglafvfglqe 199
                 **************************************************.************************************************ PP

                 ..............................xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 142 ..............................arpglslpnlll....lalllvgllplvllfmfgvalalpvnapkvkkqkaiieaiarsllpvatilll 206
                                               +rp++++pn +l    l+ll+vg++p+ +lfm ++a+a++ n+p+ ++qka+i ++a+++l v +++  
  EHU00753.1 200 rkrlgvmrisddhlnnielglgdadecaanRRPKMFWPNFILttvlLVLLVVGAMPIQILFMLAFAIAVMLNYPSLEEQKARIGSHASNVLAVTALI-- 296
                 ******************************************666666677777*************************************999999.. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 207 aykkveWsvlllfaGvfllvgaleqtGilealadllga....g.gplvalalvlglial.lsafisnvavaalmapialgmapalgllspsplalalav 299
                            ++aG+f++  +l++tG+++a+a++l a    + gp++  al+++li+l +++f+sn+a++  ++p+++++a++ g +s++++a+a++v
  EHU00753.1 297 -----------FAAGIFTG--ILSGTGMVDAMAKSLLAfiphSfGPYL--ALFTALISLpFTFFMSNDAFYFGILPVIAQTAASYG-ISAEEIARASIV 379
                 ...........********..**************9667876467876..799***************************888655.99********99 PP

                 x RF
      CitMHS 300 g 300
                 g
  EHU00753.1 380 G 380
                 8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.1
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 192 aiarsllpvatilllaykkveWsvlllfaGvfll 225
                  ++r+++++++++         s++l+++G++++
  EHU00753.1 406 DHQRFAIKWGILI---------SLVLMAGGLVTG 430
                 6888888888888.........555555555444 PP

>> Na_H_antiporter  Na+/H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9  19.5   2.2e-10   1.3e-06     100     300 ..       4     193 ..       1     197 [. 0.85
   2 !   14.5  12.2   2.5e-06     0.015     109     249 ..     236     379 ..     231     431 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.2e-10
  Na_H_antiporter 100 tgalalvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvsslakg 193
                      + +++   +v+ f  +++ + +    al+ ++l+++++a+++++   + + +++  G+k+ +++++ l ++  + g++ + g ++ lv  ++k 
       EHU00753.1   4 ILGFT---MVVCFMYLIMTKRM---SALIALILIPTLFALIGGF--YHGLGEMMLNGVKTLAPTGVMLTFSILYFGLMIDAGLFDPLVRFILKI 89 
                      44444...45566777766665...6777788************..99********************************************** PP

  Na_H_antiporter 194 v.vskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdttilsstglnadhidhvsytqlpy 286
                      v   ++ + + + +++llv+   G s  t  I    + pl+ klg++ la+  +v  ++ +   lsP++  t+  +++l+ d  d +    lp 
       EHU00753.1  90 VrGDPLKVLVGTAVLTLLVSL-DGDSSTTYMIAIAAFLPLYRKLGMNVLAMTCLVNLASGIM-NLSPWGGPTARAAAALRIDALDIFI-PMLPA 180
                      ******************986.69999*********************99999997665544.59**************999888888.67776 PP

  Na_H_antiporter 287 allvapitailllv 300
                       l+++ +++++l++
       EHU00753.1 181 ILIAC-VALVGLAF 193
                      66666.66666654 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.5e-06
  Na_H_antiporter 109 vkafivalafqntdvatalvvgalaglivatllela..slseidkllnrGiksmlgaililllAwgiggvlealgvteslvsslakgv.vs.kg 198
                      +  fi+ +++    v+ a+ + +l++l++a+++ l   sl+e ++ +   +  +l + +++++A  ++g+l  +g++++  +sl++++ +s   
       EHU00753.1 236 WPNFILTTVLLVLLVVGAMPIQILFMLAFAIAVMLNypSLEEQKARIGSHASNVLAVTALIFAAGIFTGILSGTGMVDAMAKSLLAFIpHSfGP 329
                      5556666666666666666666666666666666555588888777777788888888888888889*********************999666 PP

  Na_H_antiporter 199 llplilflvallvafatGtswgtigIilpiavplaaklgisllalvravea 249
                      +l+l + l++l  +f++ +    +gI+  ia + aa++gis   ++ra   
       EHU00753.1 330 YLALFTALISLPFTFFMSNDAFYFGILPVIA-QTAASYGISAEEIARASIV 379
                      9************************986665.6688999999666555433 PP

>> DUF3357  Domain of unknown function (DUF3357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   5.6e+03      29      49 ..      24      44 ..      19      62 .. 0.67
   2 ?    2.3   0.1     0.037   2.2e+02      21      50 ..     170     202 ..     154     215 .. 0.64
   3 ?    5.8   0.0    0.0031        18       9      41 ..     222     253 ..     214     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
     DUF3357 29 iasalvvlvvlvalagvrlag 49
                ++ al+++  l+al+g  ++g
  EHU00753.1 24 ALIALILIPTLFALIGGFYHG 44
                456777778888888875544 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.037
     DUF3357  21 r.....pllaavliasalvvlvvlvalagvrlagq 50 
                       p+l+a+lia++++v  ++  ++g+++ ++
  EHU00753.1 170 AldifiPMLPAILIACVALV-GLA-FVFGLQERKR 202
                 25556688999999998875.333.3555655555 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0031
     DUF3357   9 deaaaaaaararrpllaavliasalvvlvvlva 41 
                 d++ ++aa+r+ + +++ ++++++l+vl+v+ a
  EHU00753.1 222 DAD-ECAANRRPKMFWPNFILTTVLLVLLVVGA 253
                 444.68888888999**9999999999998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2865.01
//
Query:       EHU00754.1  [L=117]
Description: hypothetical protein CKS_2783 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.022   15.1   0.1      0.033   14.5   0.1    1.3  1  PP-binding  Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.9e-06     0.033      26      56 ..      82     112 ..      71     116 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-06
  PP-binding  26 dlGlDSllavellaaleeefgveiplsdlfe 56 
                 ++GlD l+a++l +++ ++ g++++++ l +
  EHU00754.1  82 SMGLDPLSAMALKRSVMQRTGFDLSDDKLAD 112
                 69*************************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 873.56
//
Query:       EHU00755.1  [L=294]
Description: 23S rRNA pseudouridylate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-17   61.8   0.0    2.2e-16   60.4   0.0    1.8  2  PseudoU_synth_2  RNA pseudouridylate synthase
    6.1e-11   41.9   0.2    2.8e-10   39.7   0.1    2.3  2  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   2.4e-20   2.2e-16       2     157 ..      69     199 ..      68     202 .. 0.84
   2 ?   -2.8   0.1      0.65   5.8e+03      27     156 ..     262     270 ..     238     281 .. 0.54

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 2.4e-20
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      +++++KP+g  +++ +      e + t  ++ ++    ++ +v+RLD++t Gl+l+++++e+an+l++  ++r+v+++Y + vf       g++
       EHU00755.1  69 VLAYYKPEGELCTRSD-----PEGRPTVFDRLPRLRGSRWIAVGRLDVNTCGLMLFTTDGELANRLMH--PSREVEREYAVRVF-------GQV 148
                      7899************.....8999999999999**********************************..*************9.......222 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvh 157
                      +    +  +k    ++ ++ +dg  a   l++   +     + +++++++l +Gr++++R+ 
       EHU00755.1 149 D----D--DKIRQLSKGVQLEDGPAAFKTLRFAGGE-----GINQWYNVTLTEGRNREVRRL 199
                      2....2..2222455556677777777777766666.....999****************86 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.65
  PseudoU_synth_2  27 ttatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegaikkkiskdtekqegarrkaeeldgkk 120
                      +t++                                                                                          
       EHU00755.1 262 RTKA------------------------------------------------------------------------------------------ 265
                      2222.......................................................................................... PP

  PseudoU_synth_2 121 avtylkvlksgsseksakvslveleletGrkhQiRv 156
                                                     +QiR+
       EHU00755.1 266 -------------------------------NQIRR 270
                      ...............................33333 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   3.2e-14   2.8e-10       2      43 ..       4      43 ..       3      48 .. 0.93
   2 ?   -2.2   0.0       0.4   3.6e+03      27      37 ..      49      59 ..      49      61 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 3.2e-14
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE- CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVk 43
                 L+kvlar+g +s rre++ +I +GrV V+Gk ++  ++r++
  EHU00755.1  4 KLQKVLARAGHGS-RREIEAMIAAGRVSVDGKLAT-LGDRIE 43
                79**********9.*********************.999987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.4
                TEEETTEEE-- CS
          S4 27 rVlVNGkvvkd 37
                +++++G  v +
  EHU00755.1 49 KIRIDGHLVSI 59
                699***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2321.46
//
Query:       EHU00756.1  [L=213]
Description: hypothetical protein CKS_2777 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   13.7   1.3       0.14   12.7   1.3    1.6  1  LPAM_1     Prokaryotic membrane lipoprotein lipid attachment 
      0.074   13.9   0.9       0.29   12.0   0.9    1.9  1  Trypsin_2  Trypsin-like peptidase domain
       0.34   10.9   1.0        5.3    7.1   0.0    2.6  3  SLH        S-layer homology domain


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   2.3e-05      0.14       2      18 .]       3      19 ..       1      19 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      LPAM_1  2 KKillalgalllLsGCs 18
                K++++ ++++l+LsGCs
  EHU00756.1  3 KRFVSSALIALALSGCS 19
                778999**********9 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   4.8e-05      0.29     104     147 ..     129     166 ..      58     172 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.8e-05
   Trypsin_2 104 sGivsgvvesesaasgegesfl..qtdaatspGsSGGplfdsdGrv 147
                 +  ++ +++        ++  +    +a + +G+SGG +f+sd ++
  EHU00756.1 129 RTAIRNLWN--------KSPCIamASNAGVVQGMSGGGVFNSDDTI 166
                 333333333........34444457788899**********99664 PP

>> SLH  S-layer homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.042   2.5e+02       3      19 ..     101     118 ..     101     118 .. 0.91
   2 ?    7.1   0.0   0.00089       5.3      13      34 ..     139     161 ..     132     166 .. 0.76
   3 ?   -2.8   0.1       1.1   6.6e+03      23      30 ..     168     175 ..     168     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.042
         SLH   3 kDvkkhda.wakdaieal 19 
                 +D+ +h + + +++i al
  EHU00756.1 101 TDIGDHVKmYGYSYISAL 118
                 79******888****997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00089
         SLH  13 kdaiealaelGiisGyp.dgtFr 34 
                 ++ i+ +  +G+++G++ +g F+
  EHU00756.1 139 SPCIAMASNAGVVQGMSgGGVFN 161
                 599**************444466 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.1
         SLH  23 GiisGypd 30 
                 G+i Gy+d
  EHU00756.1 168 GVIVGYSD 175
                 8999**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1598.45
//
Query:       EHU00757.1  [L=206]
Description: putative RNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-44  151.8   0.0    1.6e-44  151.6   0.0    1.0  1  Sua5_yciO_yrdC  Telomere recombination
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.19   11.7   0.0    1.3  1  Y_Y_Y           Y_Y_Y domain


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   1.7e-48   1.6e-44       1     179 []      22     198 ..      22     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 1.7e-48
                     HHHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-TS-H.HHH CS
  Sua5_yciO_yrdC   1 ealrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskeklpk.eva 94 
                     e+l+kGg++++pt+++Y+L+c+++++ a+er++ i++ + ++++++++++l++l+ + +  v + a++l+++ +PG +t++lk++ke +p+  ++
      EHU00757.1  22 EYLNKGGVIVYPTDSGYALGCRLEEKGAMERICPIRQLDGHHNFTLMCRDLSELSVYSQ--VGNSAFRLIKNNTPGNYTFILKATKE-VPRrLMN 113
                     689******************************************************98..**********************9888.7773669 PP

                     TTTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS.-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  95 pglktvGvrlPdtplarlLlealgeplvaTSanlsge.psitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     +++kt+G+r+P++p+a++Lleal+ep+++TS  l+g+     d+e++++ +g+ vdli+dgg +  ++++tV+dlt++ p+i+R+G
      EHU00757.1 114 EKRKTIGLRVPSNPVALALLEALNEPMMSTSLILPGNdFTESDPEDIQHSIGKLVDLIIDGG-TLGQQPTTVIDLTSDAPEIVREG 198
                     9***********************************944567899*****************.7788*****************98 PP

>> Y_Y_Y  Y_Y_Y domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05      0.19      29      50 ..      80     106 ..      68     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
                 ......EEEEES--SEEEEEEEEEEET CS
       Y_Y_Y  29 q.....easytnlppGdYtlkVkakdn 50 
                 q     +  ++n+ pG+Yt+ +ka+++
  EHU00757.1  80 QvgnsaFRLIKNNTPGNYTFILKATKE 106
                 33444477899************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1743.66
//
Query:       EHU00758.1  [L=294]
Description: putative PHP family metal-dependent phosphoesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-09   38.6   0.0    2.4e-09   37.7   0.0    1.3  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.4e-13   2.4e-09       1     116 [.      11     178 ..      11     229 .. 0.61

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.4e-13
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse.......................... 73 
                 dlH+Ht  s  dg ls+++lv++a e+    +aiTDh+ + g+ e+ +aa  + +  +++i G+e++   +++                          
  EHU00758.1  11 DLHSHTRAS--DGLLSPQALVERAVEMRVGVLAITDHDTVAGVAEAQQAA-LRASLPVNVIAGVEISTLWENHeihivglnidihhpvmtqflagqytt 106
                 677787765..778999*************************99999999.566689********8777666666666666666666666666666666 PP

                 ............................................E....EHHHHHHHHHHHHH..........HHHH CS
                 ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP  74 ..................................kerpshltllaknqeGyknllkllskaylegfyrkpridkell 116
                                                   + +  + ++ +    G    + +++k yl  + ++  ++ +++
  EHU00758.1 107 rleraqriaerlekaqipdalagalrlaeggmitRGHFARYLVEV----GKASTMAQVFKNYL-ARGKTGYVPPQWC 178
                 666666666666655555555555555555554444444444444....55555666666666.3344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2139.94
//
Query:       EHU00759.1  [L=520]
Description: component I of anthranilate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-85  286.5   0.0    2.8e-85  286.0   0.0    1.2  1  Chorismate_bind  chorismate binding enzyme
    8.7e-16   58.4   0.0    3.6e-14   53.2   0.0    2.9  3  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.0   0.0   3.1e-89   2.8e-85       2     258 .]     242     502 ..     241     502 .. 0.97

  Alignments for each domain:
  == domain 1  score: 286.0 bits;  conditional E-value: 3.1e-89
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETT.SEEEEECEEEEEEH CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkvegg.rrietepiaGTrar 94 
                      +e+Y++ v+k++++ir g++++vv+srr++++++   +pla+y++l++ np+py+f+++ +d++l+gaSPE  lk ++  r+ie++piaGTr+r
       EHU00759.1 242 DEEYCNVVRKMQDAIRIGEIFQVVPSRRFSLPCP---SPLAAYDTLKRSNPSPYMFFMQDQDFSLFGASPESSLKYDAAsRQIEIYPIAGTRPR 332
                      799*****************************77...578***********************************997679************* PP

                      SSSHH......HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCC CS
  Chorismate_bind  95 gktpe......edealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgav 182
                      g+++        d++ e e+++d+Ke+aEhlm+vdl+rndL+++++pgs  v++l+kv+rys v+hlvs++ g+l+ed+++l++ +a++ +g++
       EHU00759.1 333 GRHADgsldrdLDSRIELEMRTDHKELAEHLMLVDLARNDLARICRPGSRYVADLTKVDRYSFVMHLVSRVVGTLREDLDVLHAYRACMNMGTL 426
                      9999877766679********************************************************************************* PP

                      SEESHHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 183 tGaPkkrameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      +GaPk ram++i+e E +rRg+Y+Gavgy++a+g++++++vIR+a v+++ ++++aGaG+v dS+p+aE +E ++K
       EHU00759.1 427 SGAPKVRAMQLIAEAEGTRRGIYGGAVGYFTANGDLDTCIVIRSAYVENGVATVQAGAGVVLDSNPQAEADESRNK 502
                      ************************************************************************9988 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0     4e-18   3.6e-14       3     139 ..      19     190 ..      17     193 .. 0.87
   2 ?   -2.2   0.0      0.47   4.2e+03      31      53 ..     299     323 ..     276     358 .. 0.68
   3 ?    1.8   0.0     0.028   2.6e+02      89      99 ..     447     457 ..     388     457 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 4e-18
  Anth_synt_I_N   3 ltplsvylklaeee.hkflLeSaeneggegrySfigldpflelkskngeveveg........................................pe 57 
                    ++p +v+ +l + +  + lLeSa+ +++e+  S++++d +l++ + ++ v+v+                                         +e
     EHU00759.1  19 EDPAAVFHQLCGARpSTLLLESADIDSKENLKSLMIIDSALRISALGNCVTVQAlsdngrallplldealpaeiknesrpdgrvltfttthdqqDE 114
                    789*******99999***************************999999999998999999999999999999999999999999999998876666 PP

  Anth_synt_I_N  58 geeleeeepldalrellerfrsaedseptelpfvgGlvGylgYDlvreieklpksakddlnlpdarlilydtlivfDhkerr 139
                    +++l+  +++dalr + + + s  d  + e  fvgG   +++YDlv  +e+lp +   ++ +pd++++l +tl+v Dh+ + 
     EHU00759.1 115 DSRLRALSVFDALRVIPQLVNSPAD--EREAVFVGG---LFAYDLVAGFEDLP-TLSSEQRCPDYCFYLAETLLVLDHQAHS 190
                    66666666****9999999995544..667778775...68************.5667777******************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.47
  Anth_synt_I_N  31 grySfigldpflelk..skngevev 53 
                      +S+ g++p  +lk  + ++++e+
     EHU00759.1 299 QDFSLFGASPESSLKydAASRQIEI 323
                    4588888888777664455555555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.028
  Anth_synt_I_N  89 pfvgGlvGylg 99 
                     ++gG+vGy++
     EHU00759.1 447 GIYGGAVGYFT 457
                    489******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3989.36
//
Query:       EHU00760.1  [L=193]
Description: anthranilate phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-45  152.7   0.0    1.2e-44  152.4   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
    2.5e-08   33.9   0.6    9.1e-08   32.1   0.6    1.8  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.4   0.0   1.3e-48   1.2e-44       2     186 ..       6     186 ..       5     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 152.4 bits;  conditional E-value: 1.3e-48
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH..THHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEEC CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeile..llknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkeke 97 
                 l+Dn ds+t+nlv++l+ +g++v +++++ +a    e  + ++   +++s+Gpg+p+ ++ ++e++  +r+ k+Pi+GICLG+Q++++++g++v ++  
  EHU00760.1   6 LLDNIDSFTYNLVDQLRTFGHNVVIYRNNVPAALLTErlQSMDNPVLMLSPGPGAPKdAGCMPELLGALRG-KLPIIGICLGHQAIVEAYGGHVGQAG- 102
                 89****************************9998877655888889*************************.**************************. PP

                 EEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHH CS
      GATase  98 kehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnf 186
                 +  hg+ + +++d++a + gl+n++ ++++H+++  +    p++l+v a   ++  +m++++++++++g+QFHPEs++t++g++ll++ 
  EHU00760.1 103 EILHGKASSINHDGEAMFAGLSNPLPVARYHSLVGSN---TPDELTVNASY-NG-MVMAVRHEHDRVCGFQFHPESILTTQGARLLEQT 186
                 9************************************...9*****96666.77.8*****************************9986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.6     1e-11   9.1e-08     101     216 .]      73     172 ..      60     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1e-11
  Peptidase_C26 101 alergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgvi 196
                    al+ ++Pi+giC+G+q +  a+GG++ q+ e       h       ++ +++ + + ++a l +     v+ +H+   ++  +el v A    g++
     EHU00760.1  73 ALRGKLPIIGICLGHQAIVEAYGGHVGQAGEI----L-H------GKASSINHDGEAMFAGLSN--PLPVARYHSLVGSNTPDELTVNAS-YNGMV 154
                    78889********************9998873....2.3......3345677888888888876..99*******************996.579** PP

  Peptidase_C26 197 EaieseeakafvlgvQwHPE 216
                     a+++e+++  v g Q+HPE
     EHU00760.1 155 MAVRHEHDR--VCGFQFHPE 172
                    ****99955..********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1487.30
//
Query:       EHU00761.1  [L=332]
Description: indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-99  331.3   0.0    5.4e-99  330.9   0.0    1.1  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    1.6e-16   59.9   0.3    9.2e-16   57.5   0.1    2.4  3  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
  ------ inclusion threshold ------
       0.22   11.1   1.3        9.7    5.8   0.0    2.8  3  DSHCT            DSHCT (NUC185) domain


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.9   0.0    9e-103   5.4e-99       3     253 .]      73     322 ..      71     322 .. 0.99

  Alignments for each domain:
  == domain 1  score: 330.9 bits;  conditional E-value: 9e-103
                      TBEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTST--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHHH CS
  Glycos_transf_3   3 dlvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLealgvnleltpeeveklleevgvgflfapeyhkamkhvapvrr 96 
                       ++DivgTGGdg+n++NiSta+a+v+A +G+kvakhgnrsvssksGs+D+L a+g+nl++ +e ++++l++ +v+flfap+yh++++h++pvr+
       EHU00761.1  73 AFADIVGTGGDGSNSINISTASAFVAATCGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMPAELARRALDDLNVCFLFAPQYHTGFRHAMPVRQ 166
                      689******************************************************************************************* PP

                      HHTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCSTSHHHHHHHHHHHHHHHHTTEEEEEEEEEGSSTSSSEEESH CS
  Glycos_transf_3  97 elgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhgdGldevsllakttvaelkdgeiteytlepedfglkraelea 190
                      +l++rT+fn+LGPLinpar+  +++gvys+el+ ++a++lk lg +ra+vvhg G+dev+l++ t+vael +geit y+l+pedfg++ +  +a
       EHU00761.1 167 QLKTRTLFNVLGPLINPARPPLAVIGVYSPELVLPIAQTLKVLGYQRAAVVHGGGMDEVALHDVTQVAELREGEITRYQLSPEDFGFGFHPKDA 260
                      ********************************************************************************************** PP

                      HHHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSHHH CS
  Glycos_transf_3 191 leggepkenaeilkavlegkksaakrdlvllnagaalvlagkadslkegvakaeevidsGkAl 253
                      l+gg+p+en +il+++l+g+ ++a+ ++v++n++++l + g  ++l+e++++a+++i+sG+A+
       EHU00761.1 261 LAGGTPEENRDILTRLLQGNGEQAHEEAVAVNVAMLLKVFG-NEDLRENAQRALNAIRSGQAY 322
                      *****************************************.89*****************96 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   1.5e-19   9.2e-16       2      61 ..       3      62 ..       2      64 .. 0.96
   2 ?   -3.7   0.0       1.9   1.1e+04      27      35 ..     238     246 ..     234     247 .. 0.77
   3 ?   -1.3   0.0      0.34     2e+03       2      18 ..     271     288 ..     265     299 .. 0.68

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.5e-19
                     HHHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHH CS
  Glycos_trans_3N  2 diikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmre 61
                     +i++kl + ++Lt++e ++++++i++g++++ q+aA L+A++++Ge++eEia++a A++e
       EHU00761.1  3 PILEKLYQSHSLTQAESHQLFSAIITGQLEPTQLAAALVAMKVRGENPEEIAGAACALLE 62
                     79*******************************************************997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
                      TTSS-HHHH CS
  Glycos_trans_3N  27 kgevtdaqi 35 
                      +ge+t +q+
       EHU00761.1 238 EGEITRYQL 246
                      589999997 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.34
                      HHHHHHHTT..---HHHH CS
  Glycos_trans_3N   2 diikklrdg.eeLtaeei 18 
                      di+ +l++g +e   ee+
       EHU00761.1 271 DILTRLLQGnGEQAHEEA 288
                      677777777556666665 PP

>> DSHCT  DSHCT (NUC185) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.013        76      26      53 ..      22      50 ..       4      72 .. 0.66
   2 ?   -2.4   0.0      0.57   3.4e+03     104     122 ..     225     243 ..     222     247 .. 0.81
   3 ?    5.8   0.0    0.0016       9.7     134     158 ..     293     317 ..     286     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.013
       DSHCT 26 lfsgvl.ddlepeelaAllsalvfeekre 53
                lfs ++  +lep++laA+l a+    +++
  EHU00761.1 22 LFSAIItGQLEPTQLAAALVAMKVRGENP 50
                55554414678888888888776555544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.57
       DSHCT 104 asfaellektdldeGdiVR 122
                 + + ++++ ++l eG+i R
  EHU00761.1 225 VALHDVTQVAELREGEITR 243
                 5678899999999999988 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0016
       DSHCT 134 lakaakvigneeLkkkaeeaielik 158
                 +a   kv+gne+L+++a++a ++i+
  EHU00761.1 293 VAMLLKVFGNEDLRENAQRALNAIR 317
                 6677899****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2285.04
//
Query:       EHU00762.1  [L=453]
Description: indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-96  319.9   0.0    1.2e-95  319.5   0.0    1.1  1  IGPS       Indole-3-glycerol phosphate synthase
    4.2e-59  199.6   0.0    6.9e-59  198.9   0.0    1.3  1  PRAI       N-(5'phosphoribosyl)anthranilate (PRA) isomerase
  ------ inclusion threshold ------
      0.075   13.0   0.0       0.54   10.3   0.0    2.1  2  HHH_4      Helix-hairpin-helix containing domain
       0.16   11.7   0.1       0.47   10.2   0.1    1.8  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.5   0.0   2.7e-99   1.2e-95       1     253 [.       6     252 ..       6     253 .. 0.99

  Alignments for each domain:
  == domain 1  score: 319.5 bits;  conditional E-value: 2.7e-99
                 HHHCHHHHHHHHHHHHCCS-GGCCCCG..-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC---CC CS
        IGPS   1 lekivaekkeevaeakkrqsladleaavklakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFqGsle 99 
                 l+kiv++k+ +v+++k++q+l++++ +  + ++ rsf++aL+   +++a+i+E+KkaSPskglir+dfdp+ iA +y+++ Asa+SVLt+ekyFqG++ 
  EHU00762.1   6 LDKIVKDKAVWVEARKQQQPLESFQPR--IVPSSRSFYDALQG--TRTAFILECKKASPSKGLIRDDFDPEMIAGVYRHY-ASAVSVLTDEKYFQGDFA 99 
                 79**********************996..6*************..99*********************************.****************** PP

                 HHHHHHHH-SS-EEEES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEETTTTEE-CHH CS
        IGPS 100 dLrevrqavslpvlrKdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnLktlevdlnt 198
                 +L+ v++a+ +pvl+KdFiid+yqi+ ar ++adaiLL+++v++de++++l++ a+sl+++vL+Ev++e+elera++l+ak++G+NnR+L++l++dln+
  EHU00762.1 100 FLPVVSAAITQPVLCKDFIIDPYQIYLARFCQADAILLMLSVVDDEQYRQLSAIAHSLQMGVLTEVSNEQELERAIALEAKVVGINNRDLRDLSIDLNR 198
                 *************************************************************************************************** PP

                 HHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHH CS
        IGPS 199 teeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekaire 253
                 t++La+ + + v++++eSGi++  dv++l++  +n+fL+G++lm++ed+++a+r+
  EHU00762.1 199 TRQLAPRLGQGVTVISESGINNYRDVRELSHF-ANGFLIGSALMEEEDLHAAVRR 252
                 ********************************.*******************997 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   0.0   1.5e-62   6.9e-59       1     192 [.     258     447 ..     258     449 .. 0.98

  Alignments for each domain:
  == domain 1  score: 198.9 bits;  conditional E-value: 1.5e-62
                 TCE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--EEEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS-TTSE CS
        PRAI   1 akicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpaklVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktelpvika 99 
                 +k+cgltr++d+ aa++aga+++g+ifae s+r+v+ e+a++++  +p+++VGVf+N+ i++++ ++++l+l +vQLHGde +++y+ +l ++lp + +
  EHU00762.1 258 NKVCGLTRPEDACAACDAGAIYGGIIFAEGSPRQVDTEKARAVIAGAPLNYVGVFRNAAISDIVTKVESLQLSAVQLHGDE-DHAYVAALYQALPEQVQ 355
                 69*******************************************************************************.99*************** PP

                 EEEEEE-SSS--S-SSTT-SEEEEESSS-SSSXXXXGGGGTTSXX.TTEEEESSXXTTTHHHHHT.TXXSEEEEXGGGEEE.TEEXHHHHHHHH CS
        PRAI 100 lkvaesvdevkearradhvdllllDsgaGGtGelldwsliskllkslkviLAGGLtpeNvaeaiklegvlgvDvssGVEtn.GvkDlekirkfv 192
                 +++a s++++ + r+ +h+d++++D+g+GG+G+++dwsl+++++  ++v+LAGGL+++N++ea++  g++g+D++sGVE++ G+kD+ ki++++
  EHU00762.1 356 IWKALSISDALPERNWPHIDRYVFDNGQGGSGQTFDWSLLHGQDL-KNVLLAGGLSADNCVEAAQ-LGCAGLDFNSGVESApGIKDASKIAAVF 447
                 ********************************************8.9******************.*************************998 PP

>> HHH_4  Helix-hairpin-helix containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   1.4e+03      17      42 ..      69      93 ..      63     100 .. 0.80
   2 ?   10.3   0.0   0.00012      0.54      40      83 ..     120     159 ..     113     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
       HHH_4 17 isaklaekiykkygeealeilkenPY 42
                + ++++  +y++y + a+ +l+++ Y
  EHU00762.1 69 FDPEMIAGVYRHYAS-AVSVLTDEKY 93
                77899999*****55.7888888777 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00012
       HHH_4  40 nPYrliedvegigFktaDkiakklgieedsprRikagilyvlke 83 
                 +PY    +++   F +aD+i + l +  d+++R  ++i + l+ 
  EHU00762.1 120 DPY----QIYLARFCQADAILLMLSVVDDEQYRQLSAIAHSLQM 159
                 789....567789***************************9985 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0001      0.47      81     147 ..     157     230 ..     138     246 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
                 SE..EEEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT.....SEEEEESS--TTTHHHHHCT CS
   QRPTase_C  81 vk..ievevesleeleevleaeadiimLDnfsveelkkaveelkeknkr.....vlievSGgvtlenveeyaks 147
                 ++  +  ev++++ele++++ ea ++ + n +  +l   ++++++ ++r      +i+ SG  +  +v+e+ + 
  EHU00762.1 157 LQmgVLTEVSNEQELERAIALEAKVVGINNRDLRDLSIDLNRTRQLAPRlgqgvTVISESGINNYRDVRELSHF 230
                 3335899**************************99999999999998888888667777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3291.17
//
Query:       EHU00763.1  [L=396]
Description: tryptophan synthase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-54  183.4   1.7    7.1e-54  183.2   1.7    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   1.7     4e-58   7.1e-54       3     294 .]      51     377 ..      49     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 4e-58
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHH.HHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgae.yllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvall 97 
                 ++ +pT l  + +l+k ++++l+lK+E+l ++g++K++ +   +l++ + g +++ ++e+++G+hg+a A+a+allG+k++i++ a++    + +v ++
  EHU00763.1  51 YAGRPTALTLCGNLTKGTQTRLYLKREDLLHGGAHKTNQVLgQALLAKRMG-KNEIIAETGAGQHGVASALACALLGMKCRIYMGAKDVerqSPNVFRM 148
                 5789*************************************5555555666.999**********************************5555****** PP

                 HHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT.........SHHHHHH.HHTHHHHHH....HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHS CS
        PALP  98 rllGaevvevggdydeavaaaaelaaegegaylvsqfd.........nptvieg.ygtiglEil....eqlggkpdavvvpvGgGgliaGiaaglkerr 182
                 rl+Gaev+ v+++  + ++a++e+++++ g y + ++           pt++   +  ig E +    e+ g+ pdav+++vGgG+++ G+ ag+ e+ 
  EHU00763.1 149 RLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMlgtaagphpFPTIVREfQRMIGEETKkqilEKEGRLPDAVIACVGGGSNAIGMFAGFIEE- 246
                 **************************************99888775555577777********866668888************************95. PP

                 TT-EEEEEEEC..TTCGGTTCC..S..S.SS..B................SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB- CS
        PALP 183 pdvrvigvepe..gsdalarsl..ragrrvtvpvs...............dtiadglavgspselafelldrlvdeivtvsdeealeamrllarregiv 262
                  +v++igvep+  g ++  +++  ++gr+  +  +                +i  gl+ +s+++++  l      ++v+v+d+eal+a ++l+r+egi+
  EHU00763.1 247 ESVKLIGVEPAghGIETGEHGAplKHGRVGIYFGMkapmmqtsegqieesYSISAGLDFPSVGPQHAHLNSIGRADYVSVTDNEALAAFKTLCRAEGII 345
                 559********66444444444556666666666699999999999999999999*****99999999998888999********************** PP

                 B-HHHHHHHHHH.HHHHHHCCTTCEEEEEEE-B CS
        PALP 263 vepssaaalaal.klreagelkegdrvvviltg 294
                 +   sa+ala + k+++a+  ke + +vv l+g
  EHU00763.1 346 PALESAHALAHAlKMAKAEPEKE-QLIVVNLSG 377
                 ************44444444444.488888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3040.94
//
Query:       EHU00764.1  [L=267]
Description: tryptophan synthase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-96  319.8   0.0    9.4e-96  319.6   0.0    1.0  1  Trp_syntA     Tryptophan synthase alpha chain
      0.007   15.8   0.0      0.059   12.8   0.0    2.1  3  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.46   10.2   0.0    2.1  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.6   0.0   1.6e-99   9.4e-96       1     258 [.       8     266 ..       8     267 .] 0.99

  Alignments for each domain:
  == domain 1  score: 319.6 bits;  conditional E-value: 1.6e-99
                 HHHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHH CS
   Trp_syntA   1 faklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlv 99 
                 f +l a+++++fvpy+t+gdp+ e sl i++al ++gad++ElG+pfsdPladGP+Iq a lra+a+g+t+++++e++++vr+k++++Pi ll+y+nlv
  EHU00764.1   8 FTRLAAKKEGVFVPYITLGDPSPELSLRIIDALVEGGADALELGIPFSDPLADGPTIQGAGLRAFAAGTTTTQCFEIIASVRQKYPDLPIGLLMYANLV 106
                 678999********************************************************************************************* PP

                 CCC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHHHTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHHCTS CS
   Trp_syntA 100 lsygeerflaelkeagvdglivpDlPleeaeelveaakkkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkklta 198
                 ++ g+++f++++++agvd++++ D+P+ee++++++aa +++++++f ++p+++de l++++++++g++Yv+sraG+Tgaen+++  +++l+ +++++ a
  EHU00764.1 107 FNNGIDAFYQRCEQAGVDSVLIGDVPVEESAPFRQAAMRHNIAPIFFCPPNADDELLRQISSHGRGYIYVLSRAGITGAENRANLPLKHLIDKMREYHA 205
                 *************************************************************************************************** PP

                 S-EEEESSS-SHHHHHHHH.TT-SEEEE-HHHHHHHHCTTTSHHHHHHHHHHHHHHHHHCC CS
   Trp_syntA 199 vPvavGFGistkeqvkqva.kvadGvivGSalvkkieeeaeekeqalekleelarelkeaa 258
                  P ++GFGis+++qvk+v+ ++ +G+i+GSa+vk+ie++ ++++ +l++l+e+++++k+a+
  EHU00764.1 206 PPSLQGFGISEPSQVKEVIdAGVAGAISGSAVVKIIEKNLAQPKVMLTELKEFVSRMKAAT 266
                 *******************9*************************************9987 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.2   7.2e+03      95     121 ..      68      94 ..      66      97 .. 0.76
   2 ?    0.1   0.0     0.077   4.6e+02      89     119 ..     116     146 ..     102     152 .. 0.77
   3 !   12.8   0.0   9.9e-06     0.059      51     107 ..     182     239 ..     160     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.2
                   T-SEEEESHHHHH-THHHHHHHHHHCG CS
  His_biosynth  95 gadkviigtaavknpelikelaekfgs 121
                   g +    gt + ++ e+i ++ +k+++
    EHU00764.1  68 GLRAFAAGTTTTQCFEIIASVRQKYPD 94 
                   556667788888888888888888875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.077
                   HHHHHCT-SEEEESHHHHH-THHHHHHHHHH CS
  His_biosynth  89 eelleagadkviigtaavknpelikelaekf 119
                   ++  +ag+d v ig + v+++  ++++a ++
    EHU00764.1 116 QRCEQAGVDSVLIGDVPVEESAPFRQAAMRH 146
                   6777899999999999999988888887665 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 9.9e-06
                   HHHHCTTHH.HHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH CS
  His_biosynth  51 ldaakegre.anldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavk 107
                   +++a++  +   ++l+ +++e    p   G GI++ ++v+e+++ag+   i g+a+vk
    EHU00764.1 182 ITGAENRANlPLKHLIDKMREYHAPPSLQGFGISEPSQVKEVIDAGVAGAISGSAVVK 239
                   66776444314568999999999999999**************************998 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.7e-05      0.46      68     143 ..       3     123 ..       1     152 [. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.7e-05
                   HHHHHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECE..................................EEEESSTTTCCTTTCGG CS
  Amidohydro_2  68 gannrvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkG..................................vrlnphvggddllgdrl 130
                   +++  ++ +aak  + fv+ +++ +++pe  ++++   v e g+ +                                  +++  +v++++++ +  
    EHU00764.1   3 RYDRLFTRLAAKKEGVFVPYITLGDPSPELSLRIIDALV-EGGADAlelgipfsdpladgptiqgaglrafaagttttqcFEIIASVRQKYPDLPIG 98 
                   67888999*****************************99.999988444444444444444444444444555555555544444444444444322 PP

                   H............HHHHHHHHHHT- CS
  Amidohydro_2 131 d............rpifealeelgl 143
                                + +++++e  g+
    EHU00764.1  99 LlmyanlvfnngiDAFYQRCEQAGV 123
                   2455555666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.53
# Mc/sec: 1502.73
//
Query:       EHU00765.1  [L=104]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-22   79.7   1.3      2e-22   79.3   1.3    1.2  1  BON       BON domain
  ------ inclusion threshold ------
        0.1   12.6   0.4       0.18   11.8   0.2    1.6  2  DUF4995   Domain of unknown function


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   1.3   2.2e-26     2e-22       1      68 [.      37     104 .]      37     104 .] 0.98

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 2.2e-26
                 EHHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 dD+ i++kvka+l+kd +l++++inVe+ +G+V LsG+V s++ +++Av+++r+vaGV++Vvn+++++
  EHU00765.1  37 DDTVITTKVKAELLKDESLKSTEINVETFKGKVQLSGFVSSPQMANRAVQVTRSVAGVRSVVNNMQIK 104
                 89***************************************************************985 PP

>> DUF4995  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2     2e-05      0.18       1      33 [.       1      39 [.       1      67 [. 0.67
   2 ?   -1.4   0.0      0.27   2.4e+03      36      53 ..      75      92 ..      54     101 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
     DUF4995  1 mkkklll..afaa..aaialasCqtspkeeys..Wikka 33
                mk +++l  a++a  +a++l++C ++p++e++  +i+++
  EHU00765.1  1 MKWFKVLasAMVAavVALTLSACAPTPTKEGTggYIDDT 39
                666666633344411456678*****9998642266665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.27
     DUF4995 36 vavqQLeltaeevedsvk 53
                v++ Q+ + a +v  sv 
  EHU00765.1 75 VSSPQMANRAVQVTRSVA 92
                566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 801.12
//
Query:       EHU00766.1  [L=210]
Description: outer membrane protein W [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-67  225.1   0.1    7.5e-67  225.0   0.1    1.0  1  OmpW         OmpW family
    2.9e-14   53.6   2.7    3.7e-14   53.3   2.7    1.1  1  OMP_b-brl    Outer membrane protein beta-barrel domain
    1.3e-05   25.4   0.2    2.9e-05   24.2   0.1    1.4  1  Opacity      Opacity family porin protein
    0.00045   20.3   1.1       0.01   15.9   0.3    2.2  2  OMP_b-brl_2  Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
      0.016   15.0   0.1      0.025   14.3   0.1    1.3  1  OprF         OprF membrane domain


Domain annotation for each model (and alignments):
>> OmpW  OmpW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.0   0.1   2.1e-70   7.5e-67       1     192 []      22     210 .]      22     210 .] 0.98

  Alignments for each domain:
  == domain 1  score: 225.0 bits;  conditional E-value: 2.1e-70
                 STTEEEEEEEEEEECC-SCE--SECTTE-TTSCCECSSCECEEEEEEEECTTTEEEEEEEES.ECCCEEEC.SSTTCEECCCEEE-EEEEEEEE.TSTT CS
        OmpW   1 eegsliirarltkvapnasqkklkvdsavsgsevavgsdvqltlsvtyfftdnvavEllaat.tahnirvsglgsngkvgkikvlPptltlqYh.geas 97 
                 ++g+++ira+ ++v pn+ ++++       ++++++++d+ql+l++ty++tdn++vEllaat ++h+++      +g ++++++lPptl++qY+ ++ +
  EHU00766.1  22 QAGDFFIRAGSATVRPNEGSDNV-----LGMGGFSASNDTQLGLTFTYMATDNIGVELLAATpFRHKVGLG---PTGTLATVRQLPPTLMAQYYfFDSQ 112
                 68******************988.....77889**********************************9877...799********************** PP

                 SSEEEEEEEEEEEEECCECCCHHC....TCCEEEE-SECEEEEEEEEEEECSSSEEEEEEEEEECTEECCEEETCTSSCCSCCCCSSECEEEEEEEEEE CS
        OmpW  98 skvrPYvGaGvnyttffdeklgst....gltdlklkdslgaagqiGvDikvkddwllnldvkklflktkaeiklvgskklkskvkLdPwvvsigigyrF 192
                 sk rPYvG+G+nyttf+d k+++t    gl+dl++kds+g+agq+G+D+++++dwlln++ ++++++t++++k +g+++++  +++dPwv+++g+gyrF
  EHU00766.1 113 SKARPYVGVGINYTTFYDAKFNQTgrdaGLSDLSVKDSWGIAGQVGLDYQINRDWLLNASLWYMDIDTNVKFK-SGDQQQNIHMRIDPWVFFFGAGYRF 210
                 *************************************************************************.************************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   2.7     1e-17   3.7e-14       3     178 .]       8     210 .]       6     210 .] 0.72

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1e-17
   OMP_b-brl   3 llllaalsaaaaaassfggfyvggglglskvkv........dgvgsdsgfgfgvgagyefndnvgvegglsy..sgdkdysgs.gktdikinllsvpvn 90 
                  ll++al + a+a ++ g f +++g +++  +         +g+  ++++++g++ +y+ +dn+gve+ ++      ++ + +  +t ++ ++l  ++ 
  EHU00766.1   8 MLLALALPQLALAHQA-GDFFIRAGSATVRPNEgsdnvlgmGGFSASNDTQLGLTFTYMATDNIGVELLAATpfR--HKVGLGpTGTLATVRQLPPTLM 103
                 3555555555666655.88999988777755544433444444454557*****************999985322..2222221222444455555555 PP

   OMP_b-brl  91 agyafnlsds.vlpyggaGlg...ytkvevdvsgng....asdsdtdfglglgaGveyaladnwslkaeYrytdlks.......dadnd....lknntf 170
                 a y+f  s+s  +py+g+G++   +++++++  g +    + + ++ +g  +++G+ y+++ +w l+a+  y+d+++       d++ +    ++   f
  EHU00766.1 104 AQYYFFDSQSkARPYVGVGINyttFYDAKFNQTGRDaglsDLSVKDSWGIAGQVGLDYQINRDWLLNASLWYMDIDTnvkfksgDQQQNihmrIDPWVF 202
                 88887767778**********888666666655555779999******************************9999988977664444478779999** PP

   OMP_b-brl 171 qvgvgyrF 178
                  +g+gyrF
  EHU00766.1 203 FFGAGYRF 210
                 *******9 PP

>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   8.1e-09   2.9e-05      41     122 ..     105     187 ..     101     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 8.1e-09
     Opacity  41 viydfdtgskvkPyvGvrvasn...gakvsasaklpkkeafasetrvGlGvlaGvkykltpnltldtgvrynrlGrleatrvktv 122
                   y fd +sk +PyvGv +      +ak++++ + +  +  + + + G+    G +y+++ ++ l++++ y  +   ++ ++k+ 
  EHU00766.1 105 QYYFFDSQSKARPYVGVGINYTtfyDAKFNQTGRDAGLSDLSVKDSWGIAGQVGLDYQINRDWLLNASLWYMDI--DTNVKFKSG 187
                 5799************9998442246777777777777777899999**999*******************988..345555555 PP

>> OMP_b-brl_2  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   2.9e-06      0.01      95     172 ..     101     173 ..      94     176 .. 0.81
   2 !   10.0   0.0   0.00018      0.65      37      87 ..     147     195 ..     142     210 .] 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
  OMP_b-brl_2  95 Pllakykikks..nvrlflfaGpyfgylleskesgstsdvddgkakdasydsdklkkfdygltigagyeffkklglelry 172
                   l+a+y++ +s    r+++ +G+++   +++k++ + +d++ +     +   +   +++   ++g++y +++ + l++++
   EHU00766.1 101 TLMAQYYFFDSqsKARPYVGVGINYTTFYDAKFNQTGRDAGLS-----D--LSVKDSWGIAGQVGLDYQINRDWLLNASL 173
                  58******888889********************998776655.....3..33457888888889999999988888765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
  OMP_b-brl_2  37 snprlgfsvgvvveyrleegwglqpglgyssrgmefefegetnn.edkktki 87 
                  ++ + g++++v+ +y++++ w l+++l+y    ++++f++   + + ++ ++
   EHU00766.1 147 VKDSWGIAGQVGLDYQINRDWLLNASLWYMDIDTNVKFKS---GdQQQNIHM 195
                  5677899**********************99999999983...313455455 PP

>> OprF  OprF membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   6.9e-06     0.025      50     132 ..      55     139 ..      44     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.9e-06
                 -EEEEEEEEEESSSSEEEEEEEEE..EE-------------EEEEEEEEEEEE-S-SSSEEEEEEEEEEEEEEEEEE-SS-EEEE CS
        OprF  50 gdlyGasiGyfltddvelnlsyde..vndvrstdetgskkvkGdktsldalyhfgtaGdalrpyveaGlahqsitnvadgssGrd 132
                  ++ G +  y+ td++ ++l       ++v     ++   v+    +l a+y+f ++  + rpyv  G+   +  + + +++Grd
  EHU00766.1  55 DTQLGLTFTYMATDNIGVELLAATpfRHKVGLGPTGTLATVRQLPPTLMAQYYFFDSQSKARPYVGVGINYTTFYDAKFNQTGRD 139
                 56678888999999998887544311344444444455678888899************************99999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1698.27
//
Query:       EHU00767.1  [L=138]
Description: hypothetical protein CKS_2765 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-11   44.2   1.6    3.2e-11   43.8   1.6    1.2  1  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   1.6   1.8e-15   3.2e-11       1      84 [.       7      98 ..       7      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.8e-15
    CxxCxxCC  1 eCkeCgaCCk............elkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetk...lCkiYeeRpkicrlfpasekeellaraetC 84
                +C +CgaCC+            +++  ++ e +e l+ ++++++ ++ ++      rC++l++e +    C+iYe+Rp+ cr+f +s   e+++ +e C
  EHU00767.1  7 PCISCGACCAhfrvsfywaeadDAGGPVPTELTEPLSLMMRNMRGTNDRSP-----RCIALEGEIGhcvSCSIYENRPSPCREFAMS--GENGIGNEGC 98
                5********************99**************************99.....********998999*************9996..6666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1110.11
//
Query:       EHU00768.1  [L=244]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-84  282.9  22.1    2.9e-84  282.7  22.1    1.0  1  UPF0259   Uncharacterised protein family (UPF0259)


Domain annotation for each model (and alignments):
>> UPF0259  Uncharacterised protein family (UPF0259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.7  22.1   1.6e-88   2.9e-84       1     248 []       1     242 [.       1     242 [. 0.98

  Alignments for each domain:
  == domain 1  score: 282.7 bits;  conditional E-value: 1.6e-88
     UPF0259   1 msitvnslyrDtinflrnkiaailllsllsafitvlidsiilPnaeellilsilendkvinsgsssllelvqklsieqkkiLlklsiaktlssLignal 99 
                 msit+ slyrDt nf+r+++++++l+sll+af+tv++ + ++P +++++il++ ++       s sl+e+vq +s+eq+++Ll++s+a t+ +Lign+l
  EHU00768.1   1 MSITASSLYRDTGNFFRHQLITLVLMSLLTAFVTVMLLHAFTPGDDQMAILQQGDIS------SASLFEMVQSMSPEQQQVLLRASAAGTFAGLIGNTL 93 
                 9**************************************************554443......589********************************* PP

     UPF0259 100 LlgnlitliqlvsekkrvsilnaiglsllllPklliLiflttlliqlGllllliPGiivaillslsPiillkekksildsikasvnitfknikliaPav 198
                 Llg+++ li lvs+++rvs+l+aig+s++llPkll L fl+tl+ qlG+++l++PG++++i+lslsPiil +ek +++++++as+++++kn++liaPa+
  EHU00768.1  94 LLGGMLCLIPLVSSGQRVSALRAIGTSAPLLPKLLLLTFLITLVAQLGFMVLVVPGVLLTIVLSLSPIILANEKLGVIAAMRASMRMAWKNVRLIAPAI 192
                 *************************************************************************************************** PP

     UPF0259 199 llWllvklllllliskfsllskkiaflllnllsnlisailiiYlfrlYll 248
                 +lWll+kl ++++ +++ +l+ ++ +++   + nlis++l+iYl+rlY+l
  EHU00768.1 193 ILWLLAKLAVMFFFTSLVVLPMNVSTVIFTAIGNLISTLLVIYLYRLYML 242
                 *************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1847.43
//
Query:       EHU00769.1  [L=179]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-66  224.3  23.7    1.3e-66  224.2  23.7    1.0  1  IspA           Intracellular septation protein A
  ------ inclusion threshold ------
      0.056   13.7   1.3        2.9    8.1   0.1    2.3  2  stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_
        3.6    8.1  16.4        1.9    8.9   6.6    2.3  2  MerC           MerC mercury resistance protein
        9.9    5.7  11.4       0.33   10.6   0.9    3.0  3  PepSY_TM       PepSY-associated TM region


Domain annotation for each model (and alignments):
>> IspA  Intracellular septation protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2  23.7   2.8e-70   1.3e-66       1     175 [.       1     175 [.       1     176 [. 0.99

  Alignments for each domain:
  == domain 1  score: 224.2 bits;  conditional E-value: 2.8e-70
        IspA   1 mkllldllPlilFfvayklagillAtavlivatvlqiailklrtrkvekmqlislvlvvvfGgltlllhdetFikwKptvlyvlfalvLllsllilkkn 99 
                 mk+lld+lPl++Ff++ykl++i++A ++l+vat l+++++++++rk+ekm+++++vlv+vfG+ltl++h+++FikwK+tv+y lfal+Ll+s++++k++
  EHU00769.1   1 MKQLLDFLPLVVFFIFYKLYDIFVASGALVVATGLALVASWVLYRKLEKMTIFTFVLVAVFGTLTLVFHNDEFIKWKVTVIYSLFALALLFSQWFMKQP 99 
                 9************************************************************************************************** PP

        IspA 100 llkrllgkeleLpdevWrkLnlawalfflvlavlnlvvaanlsedtWvnfklFGllgltlvfiliqvillkkhlke 175
                 l++++lgkeleLp++vWr+Ln+awalffl+++++n++va+ l +++Wvnfk+FGl+gltl+f+l++++++ +++++
  EHU00769.1 100 LIQTMLGKELELPNTVWRNLNIAWALFFLLCGLANIYVAFWLPQSVWVNFKVFGLTGLTLLFTLLSGLYIWRKMPQ 175
                 ************************************************************************9986 PP

>> stn_TNFRSF12A  Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2      0.01        45      82     111 ..      25      54 ..      14      62 .. 0.83
   2 ?    8.1   0.1   0.00064       2.9      84     104 ..     153     173 ..     141     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.01
  stn_TNFRSF12A  82 lGGalslalvlgllsGflvwrrcrrrekft 111
                      Gal +a  l+l++ ++++r+  +   ft
     EHU00769.1  25 ASGALVVATGLALVASWVLYRKLEKMTIFT 54 
                    479*****************9988877776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00064
  stn_TNFRSF12A  84 GalslalvlgllsGflvwrrc 104
                    G   l+l+++llsG+ +wr+ 
     EHU00769.1 153 GLTGLTLLFTLLSGLYIWRKM 173
                    55679**************86 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.6   0.00043       1.9      38     110 ..      24      89 ..       4     109 .. 0.67
   2 ?    4.5   2.1     0.011        47      58     110 ..     116     162 ..     112     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00043
        MerC  38 lhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflgteaeetllfgslwqvltvlGaalLai 110
                 +   +l++++ ++l+a +v yr+  k+ +++  +++++  l+ +f++    e +     w+v+++ +++ La+
  EHU00769.1  24 VASGALVVATGLALVASWVLYRKLEKMTIFTFVLVAVFGTLTLVFHN---DEFI----KWKVTVIYSLFALAL 89 
                 55667778888888888888888888888888888888888888888...3333....344444444433332 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
        MerC  58 yrrhrktsvlvlgalGllillvalflgteaeetllfgslwqvltvlGaalLai 110
                 +r+ +  + l+ ++ Gl+ + va +l+   ++++   + ++v+ ++G++lL++
  EHU00769.1 116 WRNLNIAWALFFLLCGLANIYVAFWLP---QSVW---VNFKVFGLTGLTLLFT 162
                 788888899999999999999998888...3333...4556777777777655 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.12   5.5e+02     184     204 ..      29      49 ..      22      60 .. 0.78
   2 ?    0.6   0.3     0.078   3.5e+02     250     276 ..      65      91 ..      49      93 .. 0.74
   3 ?   10.6   0.9   7.3e-05      0.33     127     150 ..     151     174 ..     139     179 .] 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.12
                 xxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 184 llalTGlvwslaavlgaavka 204
                 l+++TGl++  ++vl+ ++++
  EHU00769.1  29 LVVATGLALVASWVLYRKLEK 49 
                 567799999888888877665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.078
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 250 lypLHfGtffGlplrillfllglalaa 276
                    +H  +f+ + + +++ l++lal++
  EHU00769.1  65 TLVFHNDEFIKWKVTVIYSLFALALLF 91 
                 445788888888888888888888876 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 7.3e-05
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 127 lvglaallllvllvsGlilwwprr 150
                 ++gl++l ll+ l+sGl++w +  
  EHU00769.1 151 VFGLTGLTLLFTLLSGLYIWRKMP 174
                 68999***************7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1220.21
//
Query:       EHU00770.1  [L=140]
Description: esterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-19   67.8   0.1    1.2e-18   67.3   0.1    1.2  1  4HBT             Thioesterase superfamily
     0.0017   17.9   0.1     0.0022   17.6   0.1    1.2  1  MaoC_dehydratas  MaoC like domain


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.1   1.3e-22   1.2e-18       1      74 [.      26      98 ..      26     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.3e-22
                TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETT CS
        4HBT  1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrded 74
                +G ++gG++++ +D ++++++++++ + ++v+v+ + ++fl+pv +gd++ ++a+++r+g++s+++ v+v+ ++
  EHU00770.1 26 NGDIFGGWLMSQMDMGGAILAKEIAEG-RVVTVRVDGMTFLKPVAVGDVVSCYAKCIRTGNSSMTINVQVWIKK 98
                599***********************8.*******************************************775 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.4e-07    0.0022      62     115 ..      41      94 ..      21     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-07
                      HHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas  62 vaklveeelgdnvvarvgeikvrFtkpVlpgdtlkvelevvgkrdvrktkkvev 115
                        +++++e++++ v  v+ + + F kpV +gd +  ++++    +  +t++v+v
       EHU00770.1  41 GGAILAKEIAEGRVVTVRVDGMTFLKPVAVGDVVSCYAKCIRTGNSSMTINVQV 94 
                      567899999999999***************************999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1066.46
//
Query:       EHU00771.1  [L=260]
Description: ferric siderophore transport system periplasmic binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-19   70.7  78.8    8.2e-17   62.0  78.8    2.3  1  TonB_N       TonB polyproline region
    2.5e-16   59.9   0.0    5.2e-16   58.9   0.0    1.6  1  TonB_C       Gram-negative bacterial TonB protein C-terminal
  ------ inclusion threshold ------
       0.19   12.0   0.5       0.34   11.1   0.5    1.3  1  Dockerin_1   Dockerin type I domain


Domain annotation for each model (and alignments):
>> TonB_N  TonB polyproline region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0  78.8   1.4e-20   8.2e-17       1     134 []      36     178 ..      36     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.4e-20
                 XXXXXXXXXXX.XXXXXXXXXXXXXXX....XXXXXXXXXXX..XXXXXXXXXXXXX..XXXXXXXXX..XXXXXXXXXXXX........XXXXXXXXX CS
      TonB_N   1 eqvielPkaeqkpisvtmvapaelepPapaaaepePapePavepePePePEvvPePp..apvviekPkPePkPkPkPkpvkk........vekkkrevk 89 
                 +q  elPka+q pisvtmvap+ +++Pa ++++p+P+p+P  +peP  eP + PePp  +pv+i+kP+P+P+PkP Pkp+ k         +++krevk
  EHU00771.1  36 HQTRELPKASQ-PISVTMVAPEVQPEPAITQPTPQPDPQP--APEPVAEPKPTPEPPkaEPVPIPKPEPKPEPKPEPKPEPKprprhqpkHTQPKREVK 131
                 68899******.***************8887777776666..7888889999999999999999999998666666665543222221115789***** PP

                 X.XXXXXXX.XXXXX...XXXXXXXXXXXXXXXXXXXXX--SS-EEE CS
      TonB_N  90 p.tearpes.PfendesaasarpvtaaataaaaspsvsaasgPrals 134
                 p +ea+p++ P+++d+ a++++p+ta++ +++a+p+ +a++gP+al+
  EHU00771.1 132 PrEEAKPQAnPLKQDAPATQTKPATAPKATPSATPAQTASTGPKALN 178
                 *888999989*****************************99****96 PP

>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   8.7e-20   5.2e-16       2      69 ..     181     247 ..     180     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 8.7e-20
                 -----HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--E.EE.... CS
      TonB_C   2 epeYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkn.gkpvtv 69 
                 +p+YP +A++ ++eG+v+v+f++d+dG+v+n+ +++  ++ ++++++ +a+r+w+++ ++ + g   t+
  EHU00771.1 181 KPAYPPRAAALRVEGRVRVKFDVDSDGRVDNIDILSAEPRNMFERSVKQAMRSWRYQSGKPGtGL--TM 247
                 699******************************************************99986333..33 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   5.7e-05      0.34      37      51 ..     201     215 ..     195     217 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
                 GSTT-SSCESHHHHH CS
  Dockerin_1  37 aDvNgDGrvnalDal 51 
                 +Dv+ DGrv+ +D+l
  EHU00771.1 201 FDVDSDGRVDNIDIL 215
                 455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 1919.01
//
Query:       EHU00772.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHU00772.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHU00772.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHU00772.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2958.42
//
Query:       EHU00773.1  [L=98]
Description: putative enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-29  101.9   0.0    2.2e-29  101.7   0.0    1.0  1  YCII      YCII-related domain
    0.00039   20.7   0.0    0.00045   20.5   0.0    1.4  1  DUF1330   Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   2.4e-33   2.2e-29       1      95 []       1      95 [.       1      95 [. 0.99

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 2.4e-33
                EEEEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEEEEEEEE- CS
        YCII  1 MlyvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveerevkefk 95
                Mlyvi+a d+ +sle+r+a+++ahla+l+ l++eG+l++aGp+++ d+++++ ++++g+++i+e+++l++a+++aa+dP+++aG++ ++ vk+fk
  EHU00773.1  1 MLYVIYAEDNADSLEKRNAVRPAHLARLKLLHEEGRLIVAGPMPAVDSNDPGVAGFTGSTVIAEFPSLETAQAWAADDPYIAAGVYKHVSVKPFK 95
                9********************************************************************************************97 PP

>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     5e-08   0.00045      51      76 ..      58      83 ..       3      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5e-08
     DUF1330 51 trlvvieFpsveaarawyeSpeYqaa 76
                  +v+ eFps+e+a+aw +++ Y aa
  EHU00773.1 58 GSTVIAEFPSLETAQAWAADDPYIAA 83
                689******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 699.11
//
Query:       EHU00774.1  [L=57]
Description: hypothetical protein CKS_2758 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0071   16.9   0.4     0.0079   16.7   0.4    1.1  1  YoqO             YoqO-like protein
  ------ inclusion threshold ------
      0.047   13.9   2.2      0.054   13.7   2.2    1.1  1  TrbC             TrbC/VIRB2 family
       0.22   11.0   0.5       0.22   11.0   0.5    2.5  3  SKG6             Transmembrane alpha-helix domain
       0.69    9.5   3.3       0.74    9.4   3.3    1.0  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> YoqO  YoqO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   1.8e-06    0.0079      28      77 ..       7      57 .]       2      57 .] 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
        YoqO 28 aniivigvlifvllYnwDelKkySkkslivlsitlvilvlli.vflllkgq 77
                a  +vi++l+  +lY w +   + kk liv+ i l   v l+ v ll+ gq
  EHU00774.1  7 ALLLVITLLVGGALYLWRKHGWRNKKHLIVMLIVLAAAVQLVnVNLLMTGQ 57
                6678999****************************9999888345778776 PP

>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.2   1.2e-05     0.054      54      97 ..       6      49 ..       1      50 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
        TrbC 54 akviatiaiivaGimlafgrlswrtlvmvviGiviifgAssivs 97
                  ++ +i ++v G+ +++++  wr    +++ ++++ +A ++v+
  EHU00774.1  6 MALLLVITLLVGGALYLWRKHGWRNKKHLIVMLIVLAAAVQLVN 49
                567899************************************97 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.7     0.029   1.3e+02      21      33 ..       3      15 ..       3      16 .. 0.69
   2 ?   11.0   0.5   4.8e-05      0.22      21      36 ..      10      25 ..       9      27 .. 0.92
   3 ?   -0.8   3.7      0.23     1e+03      21      29 ..      35      43 ..      34      48 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.029
        SKG6 21 aViiivLlailif 33
                a+i ++Ll+i ++
  EHU00774.1  3 AIIMALLLVITLL 15
                5788888888665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.8e-05
        SKG6 21 aViiivLlailifvrR 36
                 Vi +++++ l+++r+
  EHU00774.1 10 LVITLLVGGALYLWRK 25
                79*************9 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.23
        SKG6 21 aViiivLla 29
                +V++ivL+a
  EHU00774.1 35 IVMLIVLAA 43
                799999987 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.3   0.00016      0.74       9      47 ..       8      47 ..       2      53 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00016
     DUF4131  9 llalllllllllllllrr.rprrrvllllllllllallgf 47
                ll+++ ll   +l+l+r+  +r++  l+++l+ l+a++++
  EHU00774.1  8 LLLVITLLVGGALYLWRKhGWRNKKHLIVMLIVLAAAVQL 47
                2222222222223333335777777888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 484.56
//
Query:       EHU00775.1  [L=57]
Description: hypothetical protein CKS_2757 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        9.2    6.2   7.0        6.6    6.6   4.8    1.8  2  DUF1289   Protein of unknown function (DUF1289)


Domain annotation for each model (and alignments):
>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.8   0.00037       6.6      21      39 ..       3      21 ..       2      31 .. 0.80
   2 ?   -0.7   0.0      0.07   1.3e+03      31      41 ..      41      51 ..      38      55 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00037
     DUF1289 21 RtldEiaaWssmsdeerra 39
                R+++E+a+W+ + + +rr+
  EHU00775.1  3 RSRNEVARWRMLRQVQRRR 21
                9***********9999954 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.07
     DUF1289 31 smsdeerravl 41
                ++ +++rr++l
  EHU00775.1 41 QLAQQQRRSIL 51
                56778888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 447.81
//
Query:       EHU00776.1  [L=486]
Description: cardiolipin synthase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-35  121.5   0.0    3.6e-21   75.4   0.0    2.4  2  PLDc_2    PLD-like domain
    9.1e-15   54.1   0.1    6.1e-07   29.4   0.0    2.5  2  PLDc      Phospholipase D Active site motif
    7.2e-08   32.2   6.1    2.3e-07   30.7   6.1    1.9  1  PLDc_N    Phospholipase_D-nuclease N-terminal
  ------ inclusion threshold ------
       0.24   11.4   0.7       0.44   10.5   0.7    1.3  1  CRPA      Chlamydia 15 kDa cysteine-rich outer membrane prote


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   5.4e-15   2.4e-11       1     103 [.     134     244 ..     134     259 .. 0.78
   2 !   75.4   0.0   8.1e-25   3.6e-21       4     121 ..     329     442 ..     326     452 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 5.4e-15
      PLDc_2   1 liqliksAkksidiatyyf...vsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet......ll....gslHaKl 86 
                 li+ i+ A+++i ++ y+       +e++++l++a++rgv++r++lds     g+v+   ++ +  ++++ag++v +  +      +l     + H+K+
  EHU00776.1 134 LIRDIQLARHNIEMVFYIWnpgGLADEVAESLMAASRRGVHCRLMLDSA----GSVA-FFRSPWVGMMRNAGIDVVEALQvsllrvFLrrmdLRQHRKM 227
                 6788999**********994444456679******************93....3333.4566777777999999887663444444114556899**** PP

      PLDc_2  87 ylidgktvivGSsNltk 103
                 +lid+ ++++GS+Nl +
  EHU00776.1 228 VLIDNYIAYTGSMNLVD 244
                 **************965 PP

  == domain 2  score: 75.4 bits;  conditional E-value: 8.1e-25
      PLDc_2   4 liksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsNlt 102
                 +  sA++++ + t+y+v+++++l a++ aa rgv+v ++++++ +d+ +v  as++ ++el leagv+++ fe   g lH+K +lidg+  +vG++Nl+
  EHU00776.1 329 AVYSAREQLIMTTPYLVPSDDLLHAICTAALRGVNVSLVVPRH-NDSLLVSWASRSFFSEL-LEAGVKIYQFED--GLLHTKSVLIDGQLSLVGTVNLD 423
                 56689************************************96.57899999*********.********9976..789******************** PP

      PLDc_2 103 krgldlnlElnvviedkel 121
                  r+l ln+E+ + ++d+ +
  EHU00776.1 424 MRSLWLNFEITLAVDDAGF 442
                 **************99865 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.4e-10   6.1e-07       1      28 []     219     246 ..     219     246 .. 0.93
   2 !   22.6   0.0   1.9e-08   8.6e-05       2      28 .]     400     426 ..     399     426 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.4e-10
                 TTBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   1 ymgthHqKivivDdrvafvGgaNLcdgr 28 
                 ++ ++H+K+v +D+++a+ G++NL d r
  EHU00776.1 219 MDLRQHRKMVLIDNYIAYTGSMNLVDPR 246
                 5789********************9986 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.9e-08
                 TBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   2 mgthHqKivivDdrvafvGgaNLcdgr 28 
                 +g++H+K v +D+ +++vG+ NL++++
  EHU00776.1 400 DGLLHTKSVLIDGQLSLVGTVNLDMRS 426
                 799**********************97 PP

>> PLDc_N  Phospholipase_D-nuclease N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   6.1     5e-11   2.3e-07       7      41 ..      24      59 ..      17      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5e-11
      PLDc_N  7 lidiird.rnpssklaWllvilflPvlGailYllfG 41
                 ++i+++ r  +s +aWll+i++lP++G+i+Yl fG
  EHU00776.1 24 TLRILMKrRAVTSAMAWLLIIFILPLVGIIAYLSFG 59
                5677775477777**********************9 PP

>> CRPA  Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   9.9e-05      0.44      68     110 ..      11      54 ..       6      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.9e-05
        CRPA  68 lvvlGilLviaglallfilqaqlganaf.ylliPaviGlvkllv 110
                 l+v G  L+iag++l  +++ ++ + a+ +lli  ++ lv +++
  EHU00776.1  11 LLVFGYWLLIAGITLRILMKRRAVTSAMaWLLIIFILPLVGIIA 54 
                 79*****************9998887765899999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3813.35
//
Query:       EHU00777.1  [L=107]
Description: uncharacterized DUF440 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-44  150.3   0.1    1.8e-44  150.2   0.1    1.0  1  DUF440           Protein of unknown function, DUF440
  ------ inclusion threshold ------
      0.067   13.2   0.3        7.2    6.7   0.2    2.3  2  Lac_bphage_repr  Lactococcus bacteriophage repressor


Domain annotation for each model (and alignments):
>> DUF440  Protein of unknown function, DUF440
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.1     2e-48   1.8e-44       1     101 []       6     107 .]       6     107 .] 0.98

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 2e-48
      DUF440   1 rltedealdqaydiFlelaadnLdpadillfnlqfeerGavelvepaedWeeevgvevdkeeyaevliGL.eeeqdelddiFariLisrdkdekechil 98 
                 rltede+l+qaydiFlela dnLdpadi+lfnlqfeerG++el++p edW+e+v++++++++++ev+iGL e + + + d+Far+L++r+kd+k chil
  EHU00777.1   6 RLTEDETLEQAYDIFLELAGDNLDPADIILFNLQFEERGGAELFDPGEDWQEHVDFDLNPDFFSEVVIGLgEADGEPITDVFARVLLCREKDHKLCHIL 104
                 579*******************************************************************8889999********************** PP

      DUF440  99 Wke 101
                 W+e
  EHU00777.1 105 WRE 107
                 *85 PP

>> Lac_bphage_repr  Lactococcus bacteriophage repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0008       7.2      15      30 ..      50      65 ..      25      71 .. 0.80
   2 ?    4.6   0.0    0.0035        32      27      35 ..      79      87 ..      77      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0008
  Lac_bphage_repr 15 dskvDWdeWVSFDGkP 30
                     d+  DW+e V FD +P
       EHU00777.1 50 DPGEDWQEHVDFDLNP 65
                     5667*********777 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0035
  Lac_bphage_repr 27 DGkPltDeV 35
                     DG+P+tD  
       EHU00777.1 79 DGEPITDVF 87
                     9******65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 804.98
//
Query:       EHU00778.1  [L=332]
Description: ATP-binding subunit of oligopeptide ABC transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-32  113.3   0.0    1.6e-32  112.9   0.0    1.2  1  ABC_tran         ABC transporter
    2.2e-18   66.5   0.1    4.3e-18   65.6   0.1    1.5  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    0.00012   22.3   0.1    0.00088   19.6   0.1    2.0  1  AAA_22           AAA domain
    0.00021   20.8   0.0    0.00035   20.1   0.0    1.3  1  SMC_N            RecF/RecN/SMC N terminal domain
     0.0006   19.7   0.2       0.75    9.5   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0048   17.3   0.1      0.007   16.8   0.1    1.4  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.029   14.3   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
      0.019   15.4   0.0      0.043   14.3   0.0    1.6  1  AAA              ATPase family associated with various cellul
      0.023   14.6   0.3      0.045   13.7   0.3    1.5  1  NACHT            NACHT domain
      0.027   13.7   0.0      0.038   13.2   0.0    1.3  1  NB-ARC           NB-ARC domain
      0.027   14.2   0.1      0.048   13.4   0.1    1.4  1  AAA_29           P-loop containing region of AAA domain
      0.029   14.1   0.4        0.2   11.4   0.0    2.2  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.037   14.1   0.1      0.071   13.2   0.1    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
      0.052   12.9   0.6       0.99    8.8   0.1    2.2  2  TniB             Bacterial TniB protein
      0.098   12.6   0.2       0.21   11.5   0.2    1.5  1  MobB             Molybdopterin guanine dinucleotide synthesis
        0.1   13.0   0.0       0.24   11.8   0.0    1.7  1  RNA_helicase     RNA helicase
       0.17   10.5   0.2       0.89    8.1   0.1    1.8  2  AAA_13           AAA domain
        0.2   11.3   0.0       0.31   10.7   0.0    1.3  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.23   11.2   0.3       0.83    9.3   0.0    1.9  2  Sigma54_activat  Sigma-54 interaction domain
       0.28    9.9   0.5        6.6    5.4   0.2    2.3  2  ABC_ATPase       Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   1.8e-35   1.6e-32       2     136 ..      39     190 ..      38     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 1.8e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...............x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...............e 80 
                 + vsl l+ege++++vGe+G+GKStL+++++gl+k teG++++ g++l     +e++++r+ i++++q+  ++l+p++t+++                +
  EHU00778.1  39 DGVSLRLYEGETLGVVGESGCGKSTLARAIIGLVKATEGRVTWLGRNLLGqseEEWRKARSDIQMIFQDplASLNPRMTIGDIiaeplrtyhpelsrqD 137
                 789*********************************************99777788888899*******999*********************877666 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++++++++ k+gl     + +++ p+++SgGq qr+ +aral+ +pkl+++DEp 
  EHU00778.1 138 IKDRVKTMMMKVGLLP---NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 190
                 6666888888888666...8888889*****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.1   4.8e-21   4.3e-18       1      65 []     242     309 ..     242     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 4.8e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE g+ +++ ++p+HPYTkaL+++vp +d+  +   +++ ++ge ps+ + ++GC+F++RCp a +eC
  EHU00778.1 242 VELGTYDEVYTHPQHPYTKALMSAVPIPDPDLEknkQIQLLEGELPSPINPPSGCLFRTRCPIAGPEC 309
                 8*****************************9999999******************************* PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   9.8e-07   0.00088      10     129 ..      53     220 ..      46     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.8e-07
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdllrellralglelka.................................... 70 
                 v+GesG+GK+tl+r +    +    a+e r++ +      +s++++++ ++++  +++++l +                                    
  EHU00778.1  53 VVGESGCGKSTLARAIIGLVK----ATEGRVTWLgrNLLGQSEEEWRKARSDIQMIFQDPLASlnprmtigdiiaeplrtyhpelsrqdikdrvktmmm 147
                 89****************984....44446666653333444448888888888888888888888888888888888777777777999988888888 PP

      AAA_22  71 .........erlsseellealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvG 129
                          +r   e    ++++   ara    ++l+i DE    l+   ++++++ L +l+   + g++li++ 
  EHU00778.1 148 kvgllpnliNRYPHEFSGGQCQRIGIARALilePKLIICDEPVSaLDvsiQAQVVNLLQQLQR--EMGLSLIFIA 220
                 888888885555555555888888888888999999999997777988555999999999999..9999999986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.9e-07   0.00035      27     205 ..      51     229 ..      37     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.9e-07
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC.CCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEE.EETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrsekl.sdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgesey.kingkevtkkev 123
                   +vG+ G+GKs l  Ai   +G  +a++ r + l ++l+ +s+e+ +  + +++++f+++ ++    +++++i   + +  ++ + ++ ++++ k  v
  EHU00778.1  51 LGVVGESGCGKSTLARAI---IGLVKATEGRVTWLgRNLLGQSEEEWRKARSDIQMIFQDPLAS---LNPRMTIGDIIAEPLRTYHpELSRQDI-KDRV 142
                 569***************...8998999999998835688888999999999******999998...677777777776666633313333333.4567 PP

                 HHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka 205
                 + ++ ++g+ ++       ++SgG+ + + +a  + +   +p  l + De  +aLD +  ++v++ll++ + +    +i i+++  ++++ 
  EHU00778.1 143 KTMMMKVGLLPNlinryphEFSGGQCQRIGIARALIL---EP-KLIICDEPVSALDVSIQAQVVNLLQQLQREmgLSLIFIAHDLAVVKHI 229
                 7777777777777777777*****9988777655433...34.48899********************98887445678888888887776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0024       2.2       3      22 ..      52      71 ..      51     105 .. 0.76
   2 !    9.5   0.0   0.00084      0.75     230     301 ..     156     225 ..     122     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0024
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +++G  g+GKS+L +a+ +l
  EHU00778.1 52 GVVGESGCGKSTLARAIIGL 71
                589**************877 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00084
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpll 301
                  ++ ++e+S G+ + ++++ al+  +   +l++ DEp + L+ ++++ ++ ll +l+r  g  +i+  H+  +
  EHU00778.1 156 INRYPHEFSGGQCQRIGIARALILEP---KLIICDEPVSALDVSIQAQVVNLLQQLQReMGLSLIFIAHDLAV 225
                 56778999999999989999999888...99**********************99999888888888887665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   7.8e-06     0.007      24      55 ..      48      79 ..      36     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.8e-06
      AAA_16 24 pelvllsGesGvGKsslvrellralekdggif 55
                +e + ++GesG+GKs+l+r++   +++++g +
  EHU00778.1 48 GETLGVVGESGCGKSTLARAIIGLVKATEGRV 79
                467889**************996666655444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.2e-05     0.029      97     125 ..      46      74 ..      23      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
                  CTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelel 125
                   +++t  +vG+SG GKStL  a+++  ++
   EHU00778.1  46 YEGETLGVVGESGCGKSTLARAIIGLVKA 74 
                  3458999**************99986555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.8e-05     0.043       3      51 ..      53     106 ..      51     119 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-05
                 EESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfk 51 
                 ++G  G+GK++la+a++  ++     v+ l  ++    ++ + ++ ++i+++f+
  EHU00778.1  53 VVGESGCGKSTLARAIIGLVKategrVTWLGRNLLGQSEEEWRKARSDIQMIFQ 106
                 68***************9986322223333333333333355566666666666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3     5e-05     0.045       2      25 ..      50      73 ..      49      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5e-05
                CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawa 25
                ++ + Ge+G+GK+tL++ ++ + +
  EHU00778.1 50 TLGVVGESGCGKSTLARAIIGLVK 73
                56699**************97766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-05     0.038      22      48 ..      50      76 ..      35     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
                EEEEEESTTSSHHHHHHHHCCSHCCCC CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksdeve 48
                 +++vG  G+GK+tla+ i+   + +e
  EHU00778.1 50 TLGVVGESGCGKSTLARAIIGLVKATE 76
                578**************9987655555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   5.4e-05     0.048      15      46 ..      41      72 ..      36      80 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.4e-05
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAiqalL 46
                 ++++ + ++  ++G+sG GKSTl  Ai+ l 
  EHU00778.1 41 VSLRLYEGETLGVVGESGCGKSTLARAIIGLV 72
                5566654446669***********99988765 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.59   5.3e+02     126     146 ..       9      29 ..       3      30 .. 0.85
   2 ?   11.4   0.0   0.00022       0.2       2      23 ..      51      72 ..      50     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.59
         PRK 126 vaelldlkiyvdisidlelar 146
                 + e +dlk+  di++d ++ +
  EHU00778.1   9 LLEIADLKVHFDIKDDKQWFW 29 
                 67899***********99987 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00022
         PRK  2 IgvagsSGaGkttvarklekif 23
                +gv g+SG+Gk+t+ar++  ++
  EHU00778.1 51 LGVVGESGCGKSTLARAIIGLV 72
                599*************987655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   7.9e-05     0.071       2      22 ..      51      71 ..      50      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.9e-05
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 ++vG +  GKStL +a++g 
  EHU00778.1 51 LGVVGESGCGKSTLARAIIGL 71
                689***************985 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11        99      38      53 ..      51      66 ..      46      76 .. 0.86
   2 ?    8.8   0.1    0.0011      0.99     118     163 ..     179     222 ..     141     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
        TniB 38 lllvGdsnnGKtmive 53
                l +vG+s +GK+++++
  EHU00778.1 51 LGVVGESGCGKSTLAR 66
                669**********987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0011
        TniB 118 lkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGte 163
                 l+++++i DE  ++l   ++ q +++n+l++L++e+ ++++ +  +
  EHU00778.1 179 LEPKLIICDEPVSAL--DVSIQAQVVNLLQQLQREMGLSLIFIAHD 222
                 6899******99999..6778899****************987655 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00024      0.21       2      31 ..      51      80 ..      50      86 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
        MobB  2 lgivgksgsGKTtLleklipelkarglrvg 31
                lg+vg sg+GK tL   +i  +ka + rv 
  EHU00778.1 51 LGVVGESGCGKSTLARAIIGLVKATEGRVT 80
                89*********************9998886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.24       3      21 ..      53      71 ..      51     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
  RNA_helicase  3 lyGpsgeGKStlakeLaka 21
                  ++G+sg+GKStla+ ++  
    EHU00778.1 53 VVGESGCGKSTLARAIIGL 71
                  78************97654 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.29   2.6e+02      23      39 ..      55      71 ..      53      98 .. 0.82
   2 ?    8.1   0.1   0.00099      0.89     524     579 ..     178     231 ..     171     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.29
      AAA_13 23 GwNGaGKTtLSrllrsl 39
                G  G GK+tL+r++  l
  EHU00778.1 55 GESGCGKSTLARAIIGL 71
                7789*********9887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00099
      AAA_13 524 igkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579
                 i + k ++ D PvS LD  ++  v++l+++   ++   + +fi  H l   k +++
  EHU00778.1 178 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ-REMGLSLIFI-AHDLAVVKHISD 231
                 568899***********************997.6777777777.588877777765 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00034      0.31      10      37 ..      44      71 ..      35     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
                 -EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 10 pivqGqrtlipgafgvGktvisqslskq 37
                  + +G++++++g++g+Gk++++++++  
   EHU00778.1 44 RLYEGETLGVVGESGCGKSTLARAIIGL 71
                 5689******************998755 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00093      0.83      27      47 ..      53      73 ..      34      82 .. 0.81
   2 ?   -1.0   0.0       1.4   1.3e+03      99     120 ..     186     208 ..     162     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00093
                     EECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat 27 itGesGtGKellaraiheask 47
                     ++GesG+GK++larai    k
       EHU00778.1 53 VVGESGCGKSTLARAIIGLVK 73
                     89*************976655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                      EET.GGGS-HHHHHHHHHHHHHS CS
  Sigma54_activat  99 LDe.igelplelQekLlrvlqeg 120
                       De ++ l++++Q+++ ++lq+ 
       EHU00778.1 186 CDEpVSALDVSIQAQVVNLLQQL 208
                      45558899999999999999874 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.07        63     237     264 ..      38      68 ..      17      74 .. 0.76
   2 ?    5.4   0.2    0.0073       6.6     376     411 ..     201     236 ..     161     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.07
                 EEEEEE-..SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 237 vsGmgip..kG.vtlIvGggfhGKsTLLeAl 264
                 v G+ ++  +G    +vG    GKsTL +A+
  EHU00778.1  38 VDGVSLRlyEGeTLGVVGESGCGKSTLARAI 68 
                 55555443356334499*************8 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0073
                 HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEE CS
  ABC_ATPase 376 lvdrvrelykklgvstilvvggsgdyldvAdtvilm 411
                 +v+++++l +++g+s+i ++  +    +++d+v++m
  EHU00778.1 201 VVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 236
                 478889999999999999999999999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2505.12
//
Query:       EHU00779.1  [L=337]
Description: ATP-binding component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-28   97.7   0.0      1e-27   97.3   0.0    1.2  1  ABC_tran   ABC transporter
    1.4e-21   76.8   0.1    2.5e-21   76.0   0.1    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    1.7e-06   28.1   0.8    5.2e-06   26.5   0.0    2.0  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
    0.00015   21.3   0.2    0.00028   20.4   0.2    1.4  1  SMC_N      RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.027   14.2   0.2        1.5    8.5   0.0    2.2  2  IstB_IS21  IstB-like ATP binding protein
      0.077   12.8   0.8       0.16   11.8   0.2    1.8  2  AAA_29     P-loop containing region of AAA domain
       0.32   11.3   0.9        1.6    9.0   0.9    2.0  1  AAA_22     AAA domain
       0.36   10.9   1.3       0.66   10.0   0.6    1.7  2  DUF87      Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   4.6e-31     1e-27       2     136 ..      40     196 ..      39     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 4.6e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE....EETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei....lldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 ++++++l++ge+++ivGe+G+GKS  + +l+gll   +G+i    l++gk++ +    q  +   ++i++++q+  ++l+p ++v+e+           
  EHU00779.1  40 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAS-NGRIggsaLFNGKEILNlpekQLNRLRAEQIAMIFQDpmTSLNPYMRVGEQlmevlklhkgm 137
                 899******************************985.555555559******999884444445578*******9999*******************98 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++ ee  k+l+ ++++e + +++k  p+++SgG++qrv++a+all++pkll++DEpt
  EHU00779.1 138 ssaQAFEESVKMLDAVKMPE-ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 196
                 77666666888888899888.666778999*****************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.1   1.1e-24   2.5e-21       1      65 []     248     312 ..     248     312 .. 0.99

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.1e-24
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 +E+g+++++f +p+HPY+++Ll++vprld+e + l++i+g++p+l rl++GCpF+pRCp+a+++C
  EHU00779.1 248 MEYGRARDVFYQPAHPYSIGLLNAVPRLDAEGESLTTIPGNPPNLLRLPQGCPFQPRCPHAMDIC 312
                 7**************************************************************** PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.28   6.3e+02       3      13 ..      53      63 ..      52     113 .. 0.85
   2 !   26.5   0.0   2.3e-09   5.2e-06     233     302 ..     165     232 ..      95     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.28
      AAA_21  3 vliGpNgsGKS 13
                +++G  gsGKS
  EHU00779.1 53 GIVGESGSGKS 63
                69********9 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 2.3e-09
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                  ++e+S G+++   ++ all ++   +ll+ DEp + L+  +++ +++ll+el+r  ++ +i+ TH+  ++
  EHU00779.1 165 YPHEFSGGMRQRVMIAMALLCRP---KLLIADEPTTALDVTVQAQIMTLLNELKReFNTAIIMITHDLGVV 232
                 57899******977777777777...89**********************99999899*********8876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.2e-07   0.00028      28     209 ..      53     240 ..      43     249 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.2e-07
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC...CCCC--.BTTCSSTTEEEEEEEEEETTEE....SSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx.xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrsekl...sdlihk.skekasvkkaeveitfdnedkk....lkiekeevsisrrvkrkgeseykingkev 118
                  ivG+ GSGKs    A++ +L   +   +  + l   +++++  +k+ +++   +++++f+++  +    +++   e  +++ + +kg s+ +  +++v
  EHU00779.1  53 GIVGESGSGKSQTAFALMGLLAS-NG-RIGGSALfngKEILNLpEKQLNRLRAEQIAMIFQDPMTSlnpyMRVG--EQLMEVLKLHKGMSSAQAFEESV 147
                 69***************888883.33.4555443222455555556777778889*****99888855433333..33344444444444444444444 PP

                 -H...HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-.SCEE CS
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 119 tk...kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka.dklv 209
                 +     ++ e  ++++++++++SgG ++ v++a+ +    ++p+ l + De   aLD +  +++ +ll+e + +  + +i+i+++ ++++   dk++
  EHU00779.1 148 KMldaVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL---LCRPK-LLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITHDLGVVAGIcDKVL 240
                 4411144557788999*********77766666552...37776.7789********************8877633678888888777765545554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00066       1.5      34      68 ..      35      70 ..      12      86 .. 0.79
   2 ?    3.4   0.0     0.024        55     100     149 ..     178     229 ..     171     234 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00066
   IstB_IS21 34 kvkeLatlsf.iekkenivllGpsGvGKshlaialg 68
                 v+++  l+f +++ e + ++G sG GKs  a al 
  EHU00779.1 35 DVTAVNDLNFsLRAGETLGIVGESGSGKSQTAFALM 70
                566666677746788999**************9984 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
   IstB_IS21 100 aralkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnl 149
                   a++ l +++lli D+   +l    qa+  +l++ +++ ++++ i+it +l
  EHU00779.1 178 MIAMALLCRPKLLIADEptTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 229
                 556778999*******943455566788889999999999********9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2     7e-05      0.16      18      50 ..      45      77 ..      35      86 .. 0.74
   2 ?   -2.9   0.0       2.6   5.7e+03      41      57 ..     205     221 ..     203     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7e-05
      AAA_29 18 eidlkg.atlltGpsGsGKSTllDAiqalLvpak 50
                +++  g +  ++G+sGsGKS    A++ lL ++ 
  EHU00779.1 45 SLRA-GeTLGIVGESGSGKSQTAFALMGLLASNG 77
                4443.33666**********76668888887665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
      AAA_29  41 AiqalLvpakkvrfNka 57 
                 A+++ L+ + k++fN a
  EHU00779.1 205 AQIMTLLNELKREFNTA 221
                 55566667778999987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.9    0.0007       1.6      10     117 ..      54     219 ..      47     233 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0007
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee...................erpevvfvtlpsstsskdllrellralglelka................... 70 
                 ++GesG+GK+ ++  l+  l     +                      r+e++ +  + +++s + + ++ ++l + lk                    
  EHU00779.1  54 IVGESGSGKSQTAFALMGLLASNGRIGGsalfngkeilnlpekqlnrLRAEQIAMIFQDPMTSLNPYMRVGEQLMEVLKLhkgmssaqafeesvkmlda 152
                 89*********9999999885443333388888888888888888887777777777777777777777777777666557778888887777777777 PP

      AAA_22  71 .....erlsseellealeqalrarav........ielliiDEaqh.lr...s...eealeeLrslln 117
                      +r++ + + + +   +r+r +        ++lli DE    l+   +   +++l+eL++ +n
  EHU00779.1 153 vkmpeARKRMKMYPHEFSGGMRQRVMiamallcrPKLLIADEPTTaLDvtvQaqiMTLLNELKREFN 219
                 7777533333333355555555555566666666788888888777767553345555555544444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.6   0.00029      0.66      26      48 ..      52      74 ..      42      91 .. 0.86
   2 ?   -1.4   0.0       0.9     2e+03     119     151 ..     122     151 ..      82     223 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
       DUF87 26 lAilgsTGsGKSntvavLleell 48
                l+i+g++GsGKS t+  L+  l+
  EHU00779.1 52 LGIVGESGSGKSQTAFALMGLLA 74
                79*************99987776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.9
       DUF87 119 svleealdqakakeekeklssdepveklleelk 151
                 +v e++++ +   ++ + +ss++ +e++ + l 
  EHU00779.1 122 RVGEQLMEVL---KLHKGMSSAQAFEESVKMLD 151
                 4444444433...46666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2352.12
//
Query:       EHU00780.1  [L=302]
Description: membrane component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-29  100.7  10.0      8e-29  100.7  10.0    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne
    1.4e-14   53.7   1.5    1.4e-14   53.7   1.5    3.5  4  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
       0.24   11.4   0.2       0.24   11.4   0.2    3.2  4  Ac76          Orf76 (Ac76)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   5.8      0.65   3.9e+03      21     153 ..      40      70 ..      25     121 .. 0.49
   2 !  100.7  10.0   1.3e-32     8e-29       1     182 [.     119     300 ..     119     302 .] 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.65
  BPD_transp_1  21 rpliivllslPsfvlaillvlvf.vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglil 116
                   ++   vl+ +  fv++ +++  f +                                                                        
    EHU00780.1  40 LISLMVLMLITLFVIFAPMLSPFsY------------------------------------------------------------------------ 64 
                   4444444444444444444434442........................................................................ PP

  BPD_transp_1 117 afggllggavlleflgswpGlgtllleailgydysei 153
                                                  +d++++
    EHU00780.1  65 -------------------------------FDTDWG 70 
                   ...............................333333 PP

  == domain 2  score: 100.7 bits;  conditional E-value: 1.3e-32
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l G++a+ + ++k+d +++++ ++l s+P++ ++illv      + +g  il   ++++++s++ ++r++r + l+   k+++eaa++ G+s+w+
    EHU00780.1 119 GTLYGSIAG-YLGGKIDSVMMRILEILNSFPFMFFVILLV------TFFGRNILLiFAAIGMVSWLDMARIVRGQTLSLKRKEFIEAAHVGGVSTWK 208
                   6788*****.******************************......********988**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldpr 182
                   i+ ++++Pn+l +++  + l +++++   ++l+flg    lgt+   +++g  +s ++           +++++lv+ ++ +n++ d l ++ldp+
    EHU00780.1 209 IVTRHIVPNVLGVVVVYASLLVPSMILFESFLSFLG----LGTQEPLSSWGALLSDGAnsmevspwllLFPAIFLVVTLFCFNFIGDGLRDALDPK 300
                   ************************************....*****************9************************************97 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   1.5   2.4e-18   1.4e-14       1      51 []      24      76 ..      24      76 .. 0.91
   2 ?   -2.4   0.7      0.85   5.1e+03      19      32 ..     104     117 ..     101     127 .. 0.61
   3 ?   -1.8   2.7      0.54   3.3e+03      22      33 ..     150     161 ..     149     175 .. 0.72
   4 ?   -2.1   0.2      0.66     4e+03      22      31 ..     277     286 ..     275     294 .. 0.59

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 2.4e-18
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp..qdliqnllpP 51
                slwqda rrF  N++A+++l +l+l++l++ifaP+++P+++  +d+ ++  pP
  EHU00780.1 24 SLWQDARRRFIHNRAALISLMVLMLITLFVIFAPMLSPFSYfdTDWGMMSSPP 76
                8***************************************9887776556565 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.85
      OppC_N  19 glvilllllliaif 32 
                 +l + ++ +lia++
  EHU00780.1 104 SLMVGIAAALIAVV 117
                 55555555666654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.54
      OppC_N  22 illlllliaifa 33 
                 ++ ++ll+ +f+
  EHU00780.1 150 MFFVILLVTFFG 161
                 566777778876 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.66
      OppC_N  22 illlllliai 31 
                 i+l+++l+++
  EHU00780.1 277 IFLVVTLFCF 286
                 5555555553 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   4.1e-05      0.24      15      44 ..      33      62 ..      31      75 .. 0.86
   2 ?    0.6   0.4     0.096   5.7e+02      27      38 ..     149     160 ..     136     200 .. 0.58
   3 ?   -1.9   0.1      0.59   3.5e+03      24      44 ..     226     246 ..     217     267 .. 0.68
   4 ?   -2.3   0.4      0.75   4.5e+03      36      40 ..     277     281 ..     255     290 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.1e-05
        Ac76 15 fildkneklsellltllllfvlFiillnvy 44
                fi ++++ +s ++l+l+ lfv+F  +l+ +
  EHU00780.1 33 FIHNRAALISLMVLMLITLFVIFAPMLSPF 62
                899***999999999999******999865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.096
        Ac76  27 lltllllfvlFi 38 
                 +++ ++l+v F+
  EHU00780.1 149 FMFFVILLVTFF 160
                 345556666665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.59
        Ac76  24 sellltllllfvlFiillnvy 44 
                  +ll+  ++lf  F+  l + 
  EHU00780.1 226 ASLLVPSMILFESFLSFLGLG 246
                 467777888888887776655 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.75
        Ac76  36 lFiil 40 
                 +F+++
  EHU00780.1 277 IFLVV 281
                 22221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2230.72
//
Query:       EHU00781.1  [L=306]
Description: membrane component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-38  131.3  18.2    3.3e-38  131.3  18.2    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.088   12.7   0.5       0.31   11.0   0.5    1.9  1  DUF2897       Protein of unknown function (DUF2897)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.24   2.2e+03      30      40 ..      13      23 ..       3      60 .. 0.68
   2 !  131.3  18.2   3.6e-42   3.3e-38       1     185 []     112     306 .]     112     306 .] 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.24
  BPD_transp_1 30 lPsfvlaillv 40
                  +P++ ++i + 
    EHU00781.1 13 IPTLFVLITIS 23
                  33333322222 PP

  == domain 2  score: 131.3 bits;  conditional E-value: 3.6e-42
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   g+++G++aal++n  +d++++++  ++  +Psfv+a+llvl+f            + + + ++ lp+++l+l ++a ++r++r ++++++ ++++++
    EHU00781.1 112 GVTAGVIAALKQNTLWDYVVMGVAMTGVVIPSFVVAPLLVLIFaitlkwlpgggWNGGQWNYMLLPMVALSLAYIASIARITRGSMIEVMHSNFIRT 208
                   899**************************************************98888999************************************ PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   ara+G++ ++i+ +++l+ al p+i+ ++ af+g+++g++++e + + pG+g+l+++  l++dys+ +  +++ ++++++l+n+++d+l++++dp++
    EHU00781.1 209 ARAKGLPLRRIVLRHALKPALLPVISYMGPAFVGIITGSMVIESIYGLPGIGQLFVNGALNRDYSLVL-SLTILVGLLTILFNAIVDVLYAVIDPKI 304
                   ********************************************************************.***************************9 PP

  BPD_transp_1 184 rk 185
                   r+
    EHU00781.1 305 RY 306
                   95 PP

>> DUF2897  Protein of unknown function (DUF2897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   3.4e-05      0.31       8      25 ..     106     123 ..     103     125 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
     DUF2897   8 IiilVlgvIvGnlavLky 25 
                 I+++Vlgv +G +a+Lk+
  EHU00781.1 106 ILAVVLGVTAGVIAALKQ 123
                 99***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2242.31
//
Query:       EHU00782.1  [L=546]
Description: periplasmic substrate-binding component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-86  288.6   8.4    1.1e-85  287.9   8.4    1.3  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.9   8.4   6.2e-90   1.1e-85       2     376 ..      84     466 ..      83     467 .. 0.92

  Alignments for each domain:
  == domain 1  score: 287.9 bits;  conditional E-value: 6.2e-90
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC..............TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee..............dqdikkveavddytvrftlkkpn 86 
                 ++p++Aes w+ ++D k++tf+LRk++k+s+G+p+tA+D+v+s++rl+dp+tas+yas+l++                ++ +v+a+dd+t+++tl++p 
  EHU00782.1  84 PIPGVAES-WD-NKDFKVWTFHLRKNAKWSNGEPVTAQDFVYSWQRLADPKTASPYASYLQYghlanvddiiagkkPPTDLGVKALDDHTLQVTLSEPV 180
                 68******.57.*************************************************************************************** PP

                 TTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-..SHHHHHHHH.HTTSSSEEESTTC CS
   SBP_bac_5  87 alfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvip.dsdaraaal.qsGeiddvaeppp 183
                 ++f+ ll + + s+++ka  ++  ++++ +e+ v++G++kl++++ +++i+++rnpdYw++    l++++f  i+ + ++  + +  +G    ++++p+
  EHU00782.1 181 PYFYKLLIHSSMSPVNKAVIEKFGDKWTQPENIVSNGAFKLESHVINERITVVRNPDYWDNAHTVLNKVTFLPISsEVSDVNRYFsDNGSDMTYNNLPI 279
                 ***************98888888999999******************************99*************6233334444456666667799999 PP

                 CTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH....SHHHHHHHH CS
   SBP_bac_5 184 sdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka....ydpekAkkl 278
                 +  ++l+ ++g+++ + +p++ ++y+ +N++k+pf d+rvR Al + iDr+ iv++vl  +++pa+s++pp  +g     kp++ +       ++Akkl
  EHU00782.1 280 ELFKKLQRDNGKEL-HVDPYLCTYYYEINNQKAPFTDPRVRAALKLGIDRDIIVDKVLAQGQKPAYSYTPPATDGMELV-KPEWFTwsqeKRNAEAKKL 376
                 99999999999999.********************************************************98887544.44333367776679***** PP

                 HHHTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCTT CS
   SBP_bac_5 279 LkeaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssgag 376
                 L+eaGy+ ++        +++++ll+++s ++k++a +  + ++k +G+kv++++ +w +t+l+++++g+fd++  gw ady +p +fln++ls+s+++
  EHU00782.1 377 LAEAGYTADK--------PLTFTLLYNTSDLHKKLAIAASSIWAKnLGVKVKLENQEW-KTFLDTRHQGNFDVARAGWCADYNEPTSFLNTMLSDSSNN 466
                 ********97........568999999999999*************************.***********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4148.93
//
Query:       EHU00783.1  [L=539]
Description: periplasmic substrate-binding component of an ABC superfamily oligopeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-84  282.6  10.0    5.5e-84  282.3  10.0    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.3  10.0     3e-88   5.5e-84       1     376 [.      77     459 ..      77     460 .. 0.95

  Alignments for each domain:
  == domain 1  score: 282.3 bits;  conditional E-value: 3e-88
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC..............TCTEEEEEEEETTEEEEEESSE CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee..............dqdikkveavddytvrftlkkp 85 
                 +vvp++Aes we ++ gk++tf+LR ++k+s+G+p+tA D+v+s++rl+dp+tas+y+s+l+                 d  +v+a+dd+++++tl++p
  EHU00783.1  77 KVVPGVAES-WE-NQQGKIWTFTLRNDAKWSNGEPVTANDFVYSWRRLADPKTASPYTSYLQAahianadeiiagkaAPDQLGVKAIDDHHLQVTLTEP 173
                 69*******.56.************************************************99************************************ PP

                 TTTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEE.ESTTC CS
   SBP_bac_5  86 nalfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddv.aeppp 183
                  ++++++la+++ +++ + a +++ + ++ + ++vg+G+Y+l +++ ++kivl+rnp Yw++ +  +++ +f  i+++++ ++  +sG +d   + +pp
  EHU00783.1 174 VPYLIAMLAHTAMKPVYAPAIQKWGEAWTQPGHYVGNGAYTLSDWVVNEKIVLKRNPLYWNNAQTVIEQGTFLPISSENSDINRYRSGGLDMTnSAIPP 272
                 *****************99*****************************************99999*************************8889999** PP

                 CTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH....SHHHHHHHH CS
   SBP_bac_5 184 sdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka....ydpekAkkl 278
                 ++ ++l+++ g +v + sp + ++y+ +N+kkppf d+rvR A+ + +Dr+ i+k++++ +++pa+s++pp   ga   ++ ++ +       e+Akkl
  EHU00783.1 273 NMFAKLRKDIGDEV-KVSPLLCTFYYEINNKKPPFTDARVRAAIKMTLDRDIIAKKIMGQGQIPAYSFTPPYTNGAALATP-EWMTwsqsQRNEAAKKL 369
                 **************.*******************************************************99988865544.45558888667****** PP

                 HHHTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCTT CS
   SBP_bac_5 279 LkeaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssgag 376
                 L+eaG++ ++           ++ll+++s  +k  a + ++++++ +G +v++++ +w +t le++++ ++d++   w ady +p++fln+fls+s+ +
  EHU00783.1 370 LAEAGFDSKNSL--------RFTLLYNTSDQNKTQAIAAASMWQRnLGAQVTLQNQEW-KTLLETRHQAQYDVVRATWCADYNEPSTFLNMFLSQSSTN 459
                 *********974........56777777778889999999***999************.***********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3969.16
//
Query:       EHU00784.1  [L=157]
Description: IS66 family transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   60.6   0.0    2.1e-15   56.8   0.0    2.1  2  HTH_Tnp_1  Transposase
    7.9e-08   31.9   0.0      0.017   14.9   0.0    2.3  2  HTH_23     Homeodomain-like domain
    5.9e-05   23.1   0.0      0.019   15.1   0.0    2.4  2  HTH_28     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.025   14.4   0.1        2.1    8.3   0.0    2.7  3  MarR_2     MarR family
      0.042   13.5   0.0         10    5.9   0.0    2.3  2  CENP-B_N   CENP-B N-terminal DNA-binding domain
       0.11   12.6   2.1       0.27   11.3   0.0    2.3  3  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.13     4e+02      14      37 ..       9      32 ..       7      35 .. 0.89
   2 !   56.8   0.0   6.9e-19   2.1e-15       3      55 ..      92     144 ..      88     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvsp 37
                +++r+ ++++ +  e  rr+g+ +
  EHU00784.1  9 EALRLHFDEKLPRIEAGRRLGIPK 32
                789999***************986 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 6.9e-19
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeasp 55 
                 rr  +++ fK+++V++s++pg+sv+++Ar+ ++++n L++Wrr+y++g++a+ 
  EHU00784.1  92 RRPNFPRDFKIAMVEQSMQPGVSVAQLARENNINDNLLFNWRRLYQQGLLAAR 144
                 5677******************************************9988765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.7e-06     0.017       9      46 ..       9      47 ..       7      48 .. 0.89
   2 !   14.8   0.0   6.3e-06     0.019      12      46 ..     103     140 ..     101     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.7e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ + +l++ e+ r+Lg+++ T +    r+r+ Gl
  EHU00784.1  9 EALRLHFDeKLPRIEAGRRLGIPKTTACDLFVRFRKAGL 47
                677777777**************************9998 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.3e-06
      HTH_23  12 lllae....GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                  ++ +    G sv++ Are +++ + + +w++ y + Gl
  EHU00784.1 103 AMVEQsmqpGVSVAQLARENNINDNLLFNWRRLY-QQGL 140
                 444544559*************************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0059        18       3      42 ..       8      48 ..       8      57 .. 0.85
   2 !   15.1   0.0   6.4e-06     0.019       1      40 [.     100     139 ..     100     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0059
      HTH_28  3 leiikllaaGh.svreaArelgisrrtvyrWikryeegGia 42
                le+++l  + + ++ ea r+lgi  +t  ++  r+++ G+ 
  EHU00784.1  8 LEALRLHFDEKlPRIEAGRRLGIPKTTACDLFVRFRKAGLS 48
                689999999999***********999998888899998875 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.4e-06
      HTH_28   1 qRleiikllaa.GhsvreaArelgisrrtvyrWikryeegG 40 
                 +++ ++++ ++ G+sv+++Are +i+   +  W++ y++ G
  EHU00784.1 100 FKIAMVEQSMQpGVSVAQLARENNINDNLLFNWRRLYQQ-G 139
                 68889988887799************************9.5 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0007       2.1      10      50 ..       7      47 ..       4      47 .. 0.90
   2 ?    2.9   0.0     0.034     1e+02      17      33 ..     110     124 ..     103     126 .. 0.87
   3 ?   -1.6   0.0      0.85   2.5e+03      43      56 ..     133     146 ..     132     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0007
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l   e  rrlg++k ++  +  r+ +aGL
  EHU00784.1  7 LLEALRLHFDEKLPRIEAGRRLGIPKTTACDLFVRFRKAGL 47
                688888888888999999*********************98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.034
                 TTTSEEEHHHHHHHHTS CS
      MarR_2  17 rpgrdltvgelarrlgl 33 
                  pg  ++v++lar+ ++
  EHU00784.1 110 QPG--VSVAQLARENNI 124
                 588..9*******9877 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.85
                 HHHHHTTSEEEEES CS
      MarR_2  43 krLvaaGLverrpg 56 
                 +rL ++GL+  r++
  EHU00784.1 133 RRLYQQGLLAARTD 146
                 68889999988775 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0034        10      27      41 ..      23      37 ..      13      40 .. 0.84
   2 ?    5.4   0.0    0.0048        14      12      34 ..     101     124 ..      89     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0034
                HHHHHHT--CCHHHH CS
    CENP-B_N 27 elarrfnvpestlsd 41
                e +rr+++p++t+ d
  EHU00784.1 23 EAGRRLGIPKTTACD 37
                679*********876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0048
                 HHHHHHHHHCTT.-HHHHHHHHT- CS
    CENP-B_N  12 KievIqrleege.Skaelarrfnv 34 
                 Ki+++ ++ +   S+a lar+ n+
  EHU00784.1 101 KIAMVEQSMQPGvSVAQLARENNI 124
                 8888855544444********998 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.18   5.4e+02      16      43 ..      22      49 ..       9      64 .. 0.75
   2 ?   -4.3   0.8         6   1.8e+04      47      53 ..      88      94 ..      87      95 .. 0.69
   3 ?   11.3   0.0     9e-05      0.27      10      43 ..     111     143 ..     103     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.18
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaa 43
                 ++ ++lg+ ++t ++   rf++ Gl+ 
  EHU00784.1 22 IEAGRRLGIPKTTACDLFVRFRKAGLSW 49
                5667899999999999999999999865 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 6
      HTH_29 47 rrrsgrp 53
                r+r++rp
  EHU00784.1 88 RKRPRRP 94
                5777877 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 9e-05
      HTH_29  10 eGvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43 
                  Gvs v+q+A+  ++     ++w++++++g laa
  EHU00784.1 111 PGVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 143
                 5998.************************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1225.17
//
Query:       EHU00785.1  [L=222]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-42  141.8   0.6    1.6e-41  140.4   0.1    1.9  2  Gp138_N      Phage protein Gp138 N-terminal domain
     0.0066   16.5   3.7       0.45   10.6   1.5    3.4  3  Phage_spike  Phage spike trimer


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.1   1.7e-45   1.6e-41       4      98 .]       5     103 ..       4     103 .. 0.98
   2 ?   -1.6   0.0      0.33   2.9e+03      46      61 ..     164     179 ..     136     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 1.7e-45
     Gp138_N   4 kivsfdpaavtatvqpaikkklsdg....etvelpllvdvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlhdlsdafaivG 98 
                 +i+sfd+++vt+tvqpaik  +sd+    ++v+lpllvdvpvvfprgggvtltfpv++Gdeclvvf++r+id+w+q+Ggvqe++d r+hdlsdafa++G
  EHU00785.1   5 IIQSFDAETVTCTVQPAIKGVISDQngstQSVALPLLVDVPVVFPRGGGVTLTFPVATGDECLVVFADRCIDFWWQNGGVQESVDPRQHDLSDAFALPG 103
                 79********************99999999*******************************************************************99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.33
     Gp138_N  46 gggvtltfpvkaGdec 61 
                  g+vt+  ++ +G+ c
  EHU00785.1 164 NGNVTINGNLSQGMGC 179
                 5788888888888887 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.057   5.1e+02      38      52 ..      21      35 ..       3      36 .. 0.69
   2 ?    2.8   0.0     0.014   1.3e+02       5      18 ..     130     143 ..     126     144 .. 0.90
   3 !   10.6   1.5     5e-05      0.45      17      52 ..     158     192 ..     149     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.057
                 EEES-EEEESS-EEE CS
  Phage_spike 38 tikGdithsgGnlss 52
                  ikG i++++G+ +s
   EHU00785.1 21 AIKGVISDQNGSTQS 35
                 678889889988776 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.014
                  EEEE-SSEEEEESS CS
  Phage_spike   5 atvkAstsitLdtP 18 
                  + v A + it++tP
   EHU00785.1 130 VEVAAGHDITVKTP 143
                  7899*********9 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 5e-05
                  SSEEEEEEEEEEEEEEESSEEEEES-EEEESS-EEE CS
  Phage_spike  17 tPevecTgnLtvgtltvqgGGtikGdithsgGnlss 52 
                  +Pe++  gn+t+  +++ +G+  +G+ + ++G ++ 
   EHU00785.1 158 APEIVLNGNVTIN-GNLSQGMGCSGGSANINGPVTV 192
                  7***********7.************9999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1948.20
//
Query:       EHU00786.1  [L=160]
Description: hypothetical protein CKS_2955 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1326.39
//
Query:       EHU00787.1  [L=158]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-14   54.3   0.0    3.9e-14   52.7   0.0    1.8  2  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.062   13.1   0.0       0.15   11.9   0.0    1.6  2  HTH_23     Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   4.4e-18   3.9e-14       1      58 [.      39      96 ..      39     111 .. 0.89
   2 ?   -1.9   0.0      0.48   4.3e+03      36      51 ..     142     157 ..     141     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 4.4e-18
   HTH_Tnp_1  1 mrrrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspaef 58
                ++rr  w+ efK+r+ ++sl pg+ v+e+Ar+hgv++n  ++Wr ++r+g++ + ++ 
  EHU00787.1 39 RKRRPDWPLEFKIRMAELSLLPGACVAELAREHGVNDNLVFNWRNLHRQGLLDPAIRA 96
                58999********************************************999888874 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.48
   HTH_Tnp_1  36 spnqLykWrrqyrege 51 
                  p+ L++ +++ rege
  EHU00787.1 142 TPELLRALVSELREGE 157
                 6899999999998875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.69   6.2e+03      39      46 ..       3      10 ..       2      11 .. 0.81
   2 ?   11.9   0.0   1.7e-05      0.15       9      45 ..      52      88 ..      50      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.69
      HTH_23 39 kryreeGl 46
                kr+r+ G+
  EHU00787.1  3 KRFRRTGI 10
                89999986 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.7e-05
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeG 45
                r++ l +  G++v+e Are+gv+ + v +w++   + G
  EHU00787.1 52 RMAELSLLpGACVAELAREHGVNDNLVFNWRNLH-RQG 88
                555566668*********************9876.344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1388.26
//
Query:       EHU00788.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-40  136.3   0.0    3.3e-40  136.1   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.1   0.0   1.8e-44   3.3e-40       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.1 bits;  conditional E-value: 1.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR++++gLaa Vq++l++dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00788.1   9 RIWLVAGVTDMRCSFNGLAAKVQNTLRADPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 891.51
//
Query:       EHU00789.1  [L=288]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-24   87.2   1.0    2.4e-23   83.0   0.0    2.1  2  DDE_Tnp_IS66   Transposase IS66 family
    1.9e-14   53.8   2.8      4e-14   52.7   2.8    1.6  1  zf-IS66        zinc-finger binding domain of transposase IS66
    1.6e-12   48.0   8.3    3.5e-12   46.9   8.3    1.6  1  LZ_Tnp_IS66    Transposase C of IS166 homeodomain
     0.0069   16.7   3.3       0.03   14.6   0.6    2.5  2  Csm1_N         Csm1 N-terminal domain
  ------ inclusion threshold ------
       0.01   15.4   0.5      0.013   15.1   0.5    1.1  1  Exonuc_VII_L   Exonuclease VII, large subunit
      0.041   13.6   2.9        0.1   12.3   0.4    2.1  2  LXG            LXG domain of WXG superfamily
      0.061   13.1   7.2       0.09   12.5   7.2    1.2  1  FAM184         Family with sequence similarity 184, A and B
      0.073   13.2   2.1       0.28   11.3   0.2    2.4  2  Zn-ribbon_8    Zinc ribbon domain
      0.077   12.2   1.4       0.11   11.7   1.4    1.2  1  Tho2           Transcription factor/nuclear export subunit pr
      0.081   11.4   7.9      0.032   12.8   5.2    1.6  2  FUSC           Fusaric acid resistance protein family
      0.089   12.7   0.4       0.18   11.7   0.4    1.4  1  PyrI_C         Aspartate carbamoyltransferase regulatory chai
        0.3   10.8   3.1       0.11   12.1   0.4    1.6  2  TackOD1        Thaumarchaeal output domain 1
        0.3   10.9   2.4        1.3    8.8   2.5    1.9  2  USP8_interact  USP8 interacting
       0.49   10.2   8.3       0.68    9.7   8.3    1.1  1  ERM            Ezrin/radixin/moesin family
        0.5   10.7   5.4      0.078   13.3   1.1    1.8  2  HalX           HalX domain
       0.77    9.9   6.0          2    8.5   0.2    2.8  2  DUF1192        Protein of unknown function (DUF1192)
        1.3    9.1   7.7        4.4    7.4   0.5    2.3  2  TMF_DNA_bd     TATA element modulatory factor 1 DNA binding
        1.7    9.3   9.3        7.7    7.2   2.3    2.8  2  SlyX           SlyX
        1.8    7.8   3.4        2.6    7.2   3.4    1.1  1  TMPIT          TMPIT-like protein
          8    7.1   7.4         31    5.2   0.1    2.6  2  MerR-DNA-bind  MerR, DNA binding


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.7       0.2   1.8e+02     167     213 ..      34      81 ..      17     124 .. 0.49
   2 !   83.0   0.0   2.6e-26   2.4e-23       2      92 ..     187     277 ..     186     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleaw 213
                   sq++a   ++i++l+a+ ++++++    +    ++lr +++r+++++ e+ 
    EHU00789.1  34 SQRVAAYASEISRLKALVAKLQRMqfgkS---SEKLRDKTQRQVHESEERI 81 
                   56666666777778887777763334432...3333333333333333321 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 2.6e-26
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksyl 92 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gv+lsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +p++ ++  + l
    EHU00789.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVDLSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPDTVSTVMGIL 277
                   789****************************************************************************999888776655 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   2.8   4.4e-17     4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l+ +g d ++e+l+++   f+Vie++rpk+aC +C+
  EHU00789.1 128 ETVCPACGGELRALGCD-ISEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   8.3   3.9e-15   3.5e-12       1      68 [.      46     121 ..      46     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 3.9e-15
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSEltardpeQleL.....aleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE + rd +Q++       + +l++e  ev  +    + +++ r++  RkpLpa+LPRe+
   EHU00789.1  46 RLKALVAKLQRMQFGKSSE-KLRDKTQRQVheseeRISALQEEMGEVLGEqhdpELPQPLRQSSARKPLPASLPRET 121
                  79*****************.4788888888777776666667777776669999999******************97 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.6   3.4e-05      0.03      22      56 ..      23      57 ..      15      73 .. 0.80
   2 ?    2.1   0.2      0.28   2.5e+02      33      52 ..      71      90 ..      68      99 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00789.1 23 IRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.28
      Csm1_N 33 sqkletkdqeiesLkeqlae 52
                ++++   +++i++L+e++ e
  EHU00789.1 71 QRQVHESEERISALQEEMGE 90
                46778888889999988865 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.5   1.5e-05     0.013     144     230 ..      10     119 ..       3     190 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k....ekleekk..... 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l+ ++++q+++++er++ l+e++ +    +    ++     
    EHU00789.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLqRMQFGKSSEKLRDKTQRQVHESEERISALQEEMgEvlgeQ----HDpelpq 102
                   3344455555555566666667778999999999998888665543999***************************9996644330....3322232 PP

  Exonuc_VII_L 230 ................e 230
                                   +
    EHU00789.1 103 plrqssarkplpaslpR 119
                   33333333333333330 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   0.00011       0.1     152     193 ..      17      58 ..       4      66 .. 0.87
   2 ?    1.9   0.2      0.17   1.5e+02      97     130 ..      63      96 ..      61     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00789.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +++e +++l++e+ ++l +  
  EHU00789.1  63 SEKLRDKTQRQVHESEERISALQEEMGEVLGEQH 96 
                 5788889999999999999999999999887655 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.2    0.0001      0.09     114     196 ..      10      96 ..       7     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl++k + +v++ +e++ +l++e+ ++ +e+ 
  EHU00789.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEISRLKALvAKLQRMQFGKSSEKLRDKTQRQVHESEERISALQEEMGEVLGEQH 96 
                 578888887777765557777889**************9862678999**********************************99975 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00032      0.28      24      37 ..     126     139 ..     119     141 .. 0.80
   2 ?    0.7   0.2      0.68   6.1e+02       7      15 ..     167     175 ..     154     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
  Zn-ribbon_8  24 apltaCPeCgsevr 37 
                  +++t+CP+Cg+e+r
   EHU00789.1 126 PAETVCPACGGELR 139
                  67888******987 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.68
  Zn-ribbon_8   7 rCeeCghef 15 
                   C +C+h  
   EHU00789.1 167 ACCSCDHIV 175
                  355666554 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   0.00012      0.11      24      76 ..      37      91 ..      13     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k +++ ++ +e+i++L+eE+ e 
  EHU00789.1 37 VAAYASEISRLKALVAKLQRMQfGKSsEKLRDKTQRQVHESEERISALQEEMGEV 91
                579***************55553333367778889999999**********9875 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.2   3.6e-05     0.032     213     294 ..       4      89 ..       1     125 [. 0.85
   2 ?   -1.8   0.0      0.91   8.1e+02     488     543 ..     194     249 ..     192     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ ++++ ++ + ++r+ al+++  
  EHU00789.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRMqfgkSSEKLRDKTQRQVHESEERISALQEEMG 89 
                 44889***********************************999**********999997777888888888888888888887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.91
        FUSC 488 laavvfrlirpvsaewlarrllralrrdlaraasrpaaeaesrfesrmldrlaqll 543
                 la +v++ +   +++ + + + r    dl ra+ ++  +a s+++  ++d+l q +
  EHU00789.1 194 LARIVTAKFAEHTPHYRQSEIYRRQGVDLSRATLGRWSGAVSELLEPLYDLLRQYV 249
                 56677777778888888888888888899999999999999999999999998865 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   0.00021      0.18      14      44 ..     145     176 ..     143     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
                 GGGT.TS-.-EEEEEETTTTEEEETTT--EEE CS
      PyrI_C  14 Itnn.epveskFkvedkekvklkCkYCekeis 44 
                 I+++ e ++s Fkv+++++ kl C  C+++++
  EHU00789.1 145 ISEQlELISSAFKVIETQRPKLACCSCDHIVQ 176
                 899999**********************9876 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.6   3.2e+03      23      38 ..      21      34 ..       8      81 .. 0.43
   2 ?   12.1   0.4   0.00013      0.11     122     173 ..     127     176 ..     116     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
     TackOD1 23 eklepvldpkskelys 38
                ++++++++++   l s
  EHU00789.1 21 TTIRKMAEYNR--LLS 34
                33333333322..111 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00013
     TackOD1 122 gkleCpkCktkLrhiGvDYdrplevykCnsCkslfsepevkarClsCekese 173
                  + +Cp C  +Lr++G D ++ le  +     ++   ++ k+ C+sC++ ++
  EHU00789.1 127 AETVCPACGGELRALGCDISEQLELISSA--FKVIETQRPKLACCSCDHIVQ 176
                 6789****************999998754..588889999999*99998765 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.5    0.0014       1.3       2      60 ..      12      72 ..      11      94 .. 0.81
   2 ?   -1.4   0.0       1.9   1.7e+03      66      84 ..     218     236 ..     195     250 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..pvlraladqler 60
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  ++ ++l d+++r
     EHU00789.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRMQfgKSSEKLRDKTQR 72
                   9***************************************999877666444555554443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
  USP8_interact  66 WveslklarvtrWGglist 84 
                     +  l++a++ rW g +s 
     EHU00789.1 218 QGVDLSRATLGRWSGAVSE 236
                    5667999999999999986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.3   0.00076      0.68      17      98 ..       5      88 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00076
         ERM 17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleees 98
                + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ ++k +r+++e e++++ l+ee+
  EHU00789.1  5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRMQfgKSSEKLRDKTQRQVHESEERISALQEEM 88
                66889999999*********************************999999988733456777899*****************97 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       7.5   6.7e+03      43      57 ..      11      25 ..       7      33 .. 0.49
   2 ?   13.3   1.1   8.7e-05     0.078       2      60 ..      37      97 ..      36     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.5
        HalX 43 rleelraqldetlde 57
                rl +l ++  +t+  
  EHU00789.1 11 RLRALLQEQQTTIRK 25
                444444444444443 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 8.7e-05
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadseeYqeLe..arleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L+d ++ q  e  +r+ +l+++  e+l e+ d
  EHU00789.1 37 VAAYASEISRLKALVAKLQRMQFGKSSEKLRDKTQRQVHEseERISALQEEMGEVLGEQHD 97
                789*****************************9876644455**************99555 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0022         2      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.6   0.3     0.077        69      22      35 ..      74      87 ..      71      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0022
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00789.1 33 LSQRVAAYASEISRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.077
     DUF1192 22 veELeerIalLeaE 35
                v+E eerI++L++E
  EHU00789.1 74 VHESEERISALQEE 87
                78889********9 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.5    0.0049       4.4      23      69 ..      11      57 ..       7      62 .. 0.86
   2 ?    5.2   1.6     0.024        22      44      71 ..      62      89 ..      58      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0049
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHU00789.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRM 57
                56666788999********************9999999999999875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.024
  TMF_DNA_bd 44 elekeikelkkkleklekeleeleerlk 71
                 +ek  +++++++ ++e+ ++ l+e++ 
  EHU00789.1 62 SSEKLRDKTQRQVHESEERISALQEEMG 89
                5677777778888888888888877765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.3    0.0086       7.7      22      53 ..      12      43 ..       7      65 .. 0.87
   2 ?    4.4   1.8     0.063        57      33      59 ..      67      93 ..      44     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00789.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9877665 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.063
                HHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX 33 idrlqrqlrllaerlkeleessgasea 59
                 d+ qrq+ + +er+++l+e++g+   
  EHU00789.1 67 RDKTQRQVHESEERISALQEEMGEVLG 93
                588999999999999999999875444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.4    0.0028       2.6      13      88 ..      14      91 ..       7      99 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0028
       TMPIT 13 eleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlk....evesl 88
                +l +++++ ++k++e+++l s+ + + +++  rlk+l ++l++++  +  ++e+  ++ +++++e ++ ++    e+ ++
  EHU00789.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRMQFGK--SSEKLRDKTQRQVHESEERISalqeEMGEV 91
                555666688889999999999999999999999999999999998774..444444444444444444444111255555 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   3.4      0.15   1.4e+02      21      64 ..      13      56 ..      10      57 .. 0.84
   2 ?    5.2   0.1     0.035        31      32      57 ..      61      86 ..      58     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.15
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i +L+al a L++
     EHU00789.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQR 56
                   7788666667777778889**********************997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.035
                   TBHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqa 57
                   ++++++r+ ++r+++e eeri +Lq+
     EHU00789.1 61 KSSEKLRDKTQRQVHESEERISALQE 86
                   57889999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1266  (0.0706119); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2163.53
//
Query:       EHU00790.1  [L=360]
Description: hypothetical protein CKS_2951 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-21   75.5   0.0      6e-21   74.8   0.0    1.4  1  Peptidase_S66   LD-carboxypeptidase N-terminal domain
    5.6e-21   75.4   0.0      1e-20   74.5   0.0    1.4  1  Peptidase_S66C  LD-carboxypeptidase C-terminal domain
  ------ inclusion threshold ------
      0.055   13.2   0.0      0.075   12.8   0.0    1.2  1  DUF1834         Domain of unknown function (DUF1834)


Domain annotation for each model (and alignments):
>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0     1e-24     6e-21       1     121 []      54     174 ..      54     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 1e-24
                    EEEE-SSS-GGGSSH.HHHHHHHHHH.HHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHHHHC-TTECEEEES--SS-CHHCHHHH..-HCCHHC. CS
  Peptidase_S66   1 iaivapSsglkkeeekeeleraievl.eelglevvlgksaaksagylagtdeeRaadLnealadpeikaiicarGGygaarllpyl..dfdaikk. 92 
                    i ++a Ss+ + e+  +e+e+a ++l  + + +   +k +   +  +++tde+Ra+ L +al+d +++ ++++rGG+ga +l p l  + ++i + 
     EHU00790.1  54 IYLIASSSQYD-EKVIPEIEEAFSRLcYATDQRYLDQKPT---RLGYVNTDENRAKTLTDALSDRNVHYLWFVRGGSGALNLYPALhsNRKRISSs 145
                    77999998875.5566688888888844445555544433...237899*************************************4435677778 PP

                    S--EEEE-CCHHHHHHHHHHCHTBSEEE- CS
  Peptidase_S66  93 npkiliGySDiTalhlalyaktglvtlhg 121
                     pki++G+SD+Ta+h +++++++++++hg
     EHU00790.1 146 TPKIIFGFSDVTAVHSFVNHELNWPSVHG 174
                    ****************************8 PP

>> Peptidase_S66C  LD-carboxypeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   1.7e-24     1e-20       1     124 []     226     340 ..     226     340 .. 0.91

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.7e-24
                     EEEEEEEEHHHHHCCTTSTTS---TT..EEEEEE--TTHHHHHHHHHHHHCTSTTGGG--EEEEEE--..G...CC...---HHHHHHHHHT-GG CS
  Peptidase_S66C   1 eGrliGGnlsvlasllgtpylpekdlkgkILflEdvsespyridrmLtqlkeagvldkvkGivlGrftkpeekeeeeekeeykealeevlaeile 95 
                     +G+l GGnl+++ sl+ t+y+    +++kI++lEd++ +++++dr+L+q++ + ++ + +++++G+f  +++ ++    + +k++++ev+++++e
      EHU00790.1 226 TGKLDGGNLTLVRSLFSTKYEG--TYTDKIMMLEDTGGTAKQLDRTLHQIEYKRKF-HPRAVIFGQFY-IQN-AD----DAEKSLYREVVKNFAE 311
                     699*****************87..899********999******************.68******999.332.22....455789********** PP

                     GTTS-EEEEESESSSBS---EEETSEEEE CS
  Peptidase_S66C  96 dlkiPvlynldiGHtspnltlplGakael 124
                     + ++Pv+y  ++GH++ n +++l+ +a++
      EHU00790.1 312 RVNYPVYYYPEFGHGETNRPFILNHRASI 340
                     ************************99976 PP

>> DUF1834  Domain of unknown function (DUF1834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05     0.075     110     154 ..     209     251 ..     140     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
     DUF1834 110 qdl.GlavepLkPgrvrslfnaklqaqglsvyacefetryaeeald 154
                  d  G  vepL+P++v+++  +kl++ +l++++  f+t+y     d
  EHU00790.1 209 VDYsG--VEPLNPQAVTTVT-GKLDGGNLTLVRSLFSTKYEGTYTD 251
                 44445..59**********9.*******************963333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2623.56
//
Query:       EHU00791.1  [L=97]
Description: maltose/maltodextrin transport ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-10   38.7   0.1    9.6e-10   38.5   0.1    1.1  1  TOBE_2    TOBE domain
  ------ inclusion threshold ------
      0.021   15.1   0.2      0.035   14.4   0.2    1.3  1  TOBE      TOBE domain


Domain annotation for each model (and alignments):
>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.1   1.1e-13   9.6e-10       5      76 .]       5      73 ..       1      73 [. 0.89

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.1e-13
      TOBE_2  5 PEklrlaaagg.an.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76
                PE+l     +  a+ +l+G+V+ ve lG++t++++++++ ++ +v+++       +++G+t +++++p++++++
  EHU00791.1  5 PEHLLS---SEiADvTLEGEVQVVEQLGHETQIHIQIPAIRQNLVYRQEDV--VLVKEGTTMGIGLPPERCHLF 73
                999999...555778************************888888888887..49*****************98 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   3.9e-06     0.035       6      28 ..      17      39 ..      14      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-06
        TOBE  6 qlpgtVvvveplgseveVrvdlg 28
                +l+g+V vve lg e++++++++
  EHU00791.1 17 TLEGEVQVVEQLGHETQIHIQIP 39
                79*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 729.78
//
Query:       EHU00792.1  [L=433]
Description: maltose outer membrane porin (maltoporin) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.2e-144  480.2  18.8   9.3e-144  480.0  18.8    1.0  1  LamB      LamB porin


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  480.0  18.8  5.2e-148  9.3e-144       1     379 []      27     433 .]      27     433 .] 0.96

  Alignments for each domain:
  == domain 1  score: 480.0 bits;  conditional E-value: 5.2e-148
                 EEEEEEEEEEEETTSSB------TT-S----TT---SEEEEEEEEEEEEEETTEEEEEEEEEEEEE-............-EEEEEEEEEET-STTSTT- CS
        LamB   1 FhGYaRsGvgvsseggeqkcfqaggagskyRLGnEcdtyaElklgkelekedgkkfkvdvmlayssdelkndstadesdlalrqayveaknlleflpea 99 
                 F+GYaRsG+g++++ggeq+cfqa+ga+skyRLGnEc+tyaElklg+e++ke++k+f++d+++ays ++ +nd+++  +++a+r+a+v+ knl+++lp++
  EHU00792.1  27 FSGYARSGIGWTGSGGEQQCFQATGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVSQ-QNDWES--TSPAFREANVKGKNLIDALPGS 122
                 9*****************************************************************94.666665..88******************** PP

                 EEEEEEE--S-EEEGGGTEEEE---EEEEEEEEEE-SSSEEEEEEEEEEEEEEEEC..........EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEEE CS
        LamB 100 tlWaGkrfyrrndihilDfyywdlsGtGaGiedidlgdgklslalvrsdesddsssk.........kevsnnaldlrltgiklndggklelgldyaran 189
                 t+WaGkrfy+r+d+h++Dfyywd+sG+GaG+ed+dlg+gkls+a++rs+e+++s+++         ++++++++d+rl+g+++n++g lelg+dy+ran
  EHU00792.1 123 TIWAGKRFYQRHDVHMIDFYYWDISGPGAGLEDVDLGFGKLSFAATRSSEAGGSYTFssdrirnyaTSTADDVFDVRLAGLETNPNGVLELGVDYGRAN 221
                 ****************************************************99999*********99******************************* PP

                 --T....-TT---EEEEEEEEEEEEETTEEEEEEEEEEECCCT.T-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEEEEEEE..TTS- CS
        LamB 190 ksd....akkaakdgvmltlehtqsflggfnklalqygtglga.enkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvyqksddrydngd 283
                  +d    ++ a+kdg+++t+ehtqs+l+g+nk++lqy+t++ + + kg ++g+++n    ++++ +r+l++g+++l+++++++y+++yq++d   dn+ 
  EHU00792.1 222 ARDgyrlDEGASKDGWLFTAEHTQSMLKGYNKFVLQYATDALTsQGKGLAQGSNIN----NNGRLYRILDHGAISLAERWDMMYVAMYQNTDL--DNNR 314
                 *******99********************************997888889999999....569*****************************9..9*** PP

                 -EEEEEEEEEEEEECCTTEEEEEEEEEEEEEE.......EEEEEEEEEEEESSSSTT-SSEEEEEEEEEEEEESEEE.................TGGGS CS
        LamB 284 dkkwlsagvRpvykltdnfklllElgydrvkk......gnlyKlTlaptlkagsgfwsRPelRlfatyakwneaakd.................alska 359
                 +++w+++gvRp+yk+t+++++llE+gyd+vk+      +++yK+Tla++++ag+++wsRP+lRlfatyakw+e++ +                  +   
  EHU00792.1 315 GNEWYTVGVRPMYKWTPIMSTLLEVGYDNVKSqevgerNGQYKITLAQQWQAGDSIWSRPALRLFATYAKWDEKWGYskdaagdlttlaardssGNGLF 413
                 *******************************44455558****************************************************99866778 PP

                 B-SS-EEEEEEEEEEEEEEE CS
        LamB 360 gakkgdtseltfGvqaEaWW 379
                 ++++g+++e+tfG+q+E+WW
  EHU00792.1 414 TNSRGNNDEWTFGAQMEIWW 433
                 89999*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3639.30
//
Query:       EHU00793.1  [L=306]
Description: maltose regulon periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-51  171.2   0.0    1.5e-50  170.4   0.0    1.4  1  MalM      Maltose operon periplasmic protein precursor (MalM)
  ------ inclusion threshold ------
       0.16   12.2   0.0       0.36   11.0   0.0    1.5  1  SgrR_N    Sugar transport-related sRNA regulator N-term
       0.19   11.0   0.2       0.47    9.8   0.0    1.7  2  TPR_MalT  MalT-like TPR region


Domain annotation for each model (and alignments):
>> MalM  Maltose operon periplasmic protein precursor (MalM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   2.6e-54   1.5e-50       3     134 .]      77     208 ..      75     208 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 2.6e-54
        MalM   3 ksavaafalPanrgsleltlsSlvkdksvfaPnvlvLDeqfkvvatyssskFkyqparllkgdrleaelkltpaegqkeiYllvytteedlakstkleh 101
                 +++vaa++lPa  g+l++tlsS+v++++vfaPnvlvLDe+++++a+++s+ F+yq+++++ +dr+e+ +kltp+ gq++iYllv+tte+dl+++t+l++
  EHU00793.1  77 TGPVAAYSLPATLGELTITLSSEVQNNQVFAPNVLVLDEHLRPAAWFPSRWFTYQQPGVMAADRIEGVMKLTPVPGQQKIYLLVFTTEKDLTQTTTLLD 175
                 79************************************************************************************************* PP

        MalM 102 pakayakalgnavpeikdpvakhsatGqlelkv 134
                 pakaya+++g+avp+i+dpva+hs +G+l+++v
  EHU00793.1 176 PAKAYARGTGHAVPDIPDPVARHSLSGRLKINV 208
                 *******************************98 PP

>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-05      0.36      67     104 ..     257     294 ..     251     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.1e-05
      SgrR_N  67 lepeelqeqlaeklleqgkiekalalldkdkaalakll 104
                 ++ e++ +q ++++++qg+i+kal+lld++++  +   
  EHU00793.1 257 TDTESYFNQSIRQAVAQGNIDKALKLLDEAERLGSPSA 294
                 56789999********************7776655555 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.41   2.4e+03     211     243 ..      14      46 ..       8      55 .. 0.63
   2 ?    9.8   0.0   7.8e-05      0.47     170     194 ..     269     293 ..     232     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.41
    TPR_MalT 211 lwlaqgdlaaaerwleaaelpsdddnhflelel 243
                 ++l+ g++a a++ +   ++++++  hf++  l
  EHU00793.1  14 AMLLAGHSATARAEINLMPQDVSGAPHFSQTSL 46 
                 556666666666666666666666666666544 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 7.8e-05
    TPR_MalT 170 ialaqGdleeAetllekaeelares 194
                  a aqG++++A++ll++ae+l   s
  EHU00793.1 269 QAVAQGNIDKALKLLDEAERLGSPS 293
                 5789***************996544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2598.12
//
Query:       EHU00794.1  [L=684]
Description: 4-alpha-glucanotransferase (amylomaltase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.9e-130  433.7   0.0   1.1e-129  433.3   0.0    1.0  1  Glyco_hydro_77  4-alpha-glucanotransferase


Domain annotation for each model (and alignments):
>> Glyco_hydro_77  4-alpha-glucanotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.3   0.0  6.3e-134  1.1e-129       1     466 [.     142     661 ..     142     663 .. 0.93

  Alignments for each domain:
  == domain 1  score: 433.3 bits;  conditional E-value: 6.3e-134
                     E-GGGSB-SSSSSS--SSHHHHHHHHHHHTT--EEEES--SE....ST..--TTS-SESSSE-GGGS-CHG.HHH...........HHHHHTTSS CS
  Glyco_hydro_77   1 lplsSLrskksyGiGdlgdlkefvdflakagqklwqilPlndt...ep.dtsPYsslSafalnplyidlealpel...........aelaeegll 80 
                     ++l+SLrs+ ++G+Gd++dl+++v+ + + g  +++++Pl+++    p ++sPYs++S+++ln+lyi++ ++ ++           ++ ++++l+
      EHU00794.1 142 VQLYSLRSAGNWGMGDFADLRQLVNETGQRGGAFIGLNPLHALfpaLPdQASPYSPSSRRWLNVLYISVPDVADFtlsaaaqawwlTAETQDVLQ 236
                     69****************************************988744467***********************999888888777444444444 PP

                     HGGGSSB--HHHHHHHHHHHHHHHHHTHHH..HHSHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHCT-SSGGGS-HHHHTTTHHHHHHHHH CS
  Glyco_hydro_77  81 akeelervdyekvielklkllrkaferfkek.kkakeskefeeFveenaewledyalFmal.....kekfegaswseWpeelrkrkeealekakk 169
                       ++ ++vdy +v++lkl++lr a+++f ++ k+++e+ +fe F+ + +e l ++ +F+al      ++     w +Wp+++++++++a+++++ 
      EHU00794.1 237 RARAAQWVDYPAVASLKLTALRFAWAQFLQRdKEDSEAVAFEVFILQGGESLLHQGIFDALhawfvGQDPTCHGWDTWPAAYQQPDSAAVHAFRI 331
                     444448*******************998776466667788*********************6666655556689********************* PP

                     HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEE..EEEESS--SSSHHHHHCGGGB-BTTTSEESSBSSSTT-EEEEEE-B-HHHHHHTTTHH CS
  Glyco_hydro_77 170 elaeeiefykflQylfdkqlkelkeyanekgieli..gDlpigvardSadvWanpelFkldesaGaPPDafsatGQnWgnPlynweelekdgyaw 262
                     e+ +ei+fy++lQ+l+++q++++ +  ++ +++l+  +Dl++gva ++a++W+++ l++l +s+GaPPD + + GQnWg+P+ ++ el +++y++
      EHU00794.1 332 EHGDEIRFYQWLQWLAARQFAACWQDSQRLQMTLGlyRDLAVGVAANGAETWSQRALYCLAASVGAPPDILGPLGQNWGLPPLHPGELYDRAYEP 426
                     **********************************999********************************************************** PP

                     HHHHHHHHHTT-SEEEETTGGGGTEEEEEETT-SSCTC-EEEE--HHHHHHHHHHHHHHCT-EEEE---SS--HHHHHHHHHTT-BEEEEGGGTT CS
  Glyco_hydro_77 263 wikrlraalklfdalRIDHvlGffrlWeipaeektalngeyvkypgeelfevlkeelqkgkllviaEDLGvvpdevrelleelgilgmkvlqfaf 357
                     wi +lra+++ ++alRIDHv+++ rlW+ipa+ +ta +g+yv yp+++l+++l+ e+q+++++vi+EDLG+vpd + + l++ g++++kvl+f++
      EHU00794.1 427 WITLLRANMRDCGALRIDHVMALLRLWWIPAG-ETAAEGAYVTYPVDDLLAILALESQRHRCMVIGEDLGTVPDTIVAKLRDAGVYSYKVLYFER 520
                     *******************************9.9************************************************************* PP

                     STTTT.TTSGGGS-SSEEEES--TTS--HHHHHT.......................HHHHHHHHHHHHHHHHTT...........CCS-GGGHH CS
  Glyco_hydro_77 358 edeenefylphnypensvvytgtHDndtlrgwwe.......................eerakekealleylkeeg...........peeaeeeiv 418
                     + e+  f++p+ +p++++++ +tHD++tlrgww+                       ++r+++++all+ l+++g           +++++  ++
      EHU00794.1 521 TAER-AFRPPAAWPAQAMAVATTHDMPTLRGWWQhddltlgsqlglypdnavlgglhRQRRTARAALLQSLQRQGylkngalvqanSPRMSLVLN 614
                     7777.5*************************************************987777799999999999999999999876544888999* PP

                     HHHHHHHHHSSSSEEEEEHHHHTTTGGG-S--TT-SSSSTTS-B--SS CS
  Glyco_hydro_77 419 ealirlalasvaklailplqDlllgeeeriNvPgtveeepnWrwrlkl 466
                     +al+ ++++++++l+ l+ +D+ l++++ +NvPgtve +pnWr++l+l
      EHU00794.1 615 TALHCFLADCNSALLGLQPEDW-LDMASPVNVPGTVETYPNWRRKLSL 661
                     **********************.*********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 5624.50
//
Query:       EHU00795.1  [L=800]
Description: maltodextrin phosphorylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.3e-299  993.5   0.0   6.1e-299  993.3   0.0    1.0  1  Phosphorylase  Carbohydrate phosphorylase


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  993.3   0.0  3.4e-303  6.1e-299       2     710 ..      93     797 ..      92     798 .. 0.99

  Alignments for each domain:
  == domain 1  score: 993.3 bits;  conditional E-value: 3.4e-303
                    HCTT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEEC CS
  Phosphorylase   2 kelgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkvee 97 
                    ++ +++l++++e e+d++LGnGGLGRLAacfld++at++ pa+Gyg++Y+yGlF+Q+++dgaq e+pd+W +++ pw + +  + v+v +gg+v++
     EHU00795.1  93 SQWDVSLSDVLENERDPALGNGGLGRLAACFLDAMATVGQPATGYGLNYQYGLFRQRFVDGAQDEQPDDWQRERYPWFTYNARRDVQVGLGGRVSN 188
                    68899*****************************************************************************************98 PP

                    CTTE...ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-STTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHHHHH CS
  Phosphorylase  98 eeeeeklkvkwvdeeevlavpydvpvvGyktktvntLrLwsakaseefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqYflv 193
                    e+     +++w+++  +++ ++d+pvvG+++ +++ LrLw+a++++ fdl++fn+g +++a ++  +a +++kvLYPnd++++gk+LrL QqYf +
     EHU00795.1 189 ENG----TIRWQPAFYLKGEAWDLPVVGFENGVTQPLRLWQATHAQPFDLQTFNNGAFMRAEKQGMDAAKLTKVLYPNDHHQAGKKLRLIQQYFQC 280
                    554....799************************************************************************************** PP

                    HHHHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHH CS
  Phosphorylase 194 saslqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhleiie 289
                    ++sl+dilrr+ +  ++l++l+++ +iqlnDtHP+laipelmr+L+de++++wd+aw++t++tfaytnht+lpeale+w++ +++ llprh+ ii+
     EHU00795.1 281 ACSLTDILRRHLQAGRSLDSLADYEVIQLNDTHPTLAIPELMRLLIDEHQFSWDSAWTLTQRTFAYTNHTLLPEALECWDTGIVRALLPRHMLIIH 376
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHSTT-HHHHHHHSSEETSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-CHHHCCCTSHHHHHH CS
  Phosphorylase 290 einerfleevekklpedeeklerlsiieeekkvrmanlaivgshsvngvaalhsellkkevlkdfyelypekfnnktnGitprrwlllanpelael 385
                    ++n+++++ev++++p+d++ ++rl+i++ +k++rmanl+++ +++vngvaalhs+l+k+e++ ++++l+p+kf+n+tnGitprrw+ ++np+la+l
     EHU00795.1 377 RLNAQLKAEVDARWPGDDAVWARLAIVH-HKQLRMANLCVMSCFAVNGVAALHSRLVKEELFPEYVALWPDKFHNVTNGITPRRWINQCNPRLARL 471
                    ****************************.9****************************************************************** PP

                    HHHHCSSGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTS-- CS
  Phosphorylase 386 itekigeewvkdleeLkkLekladdkefleelaeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneikenpekkv 481
                    i++++++ w++dl+ L++Le+ +dd+ f++++++ikq+nK++la++i+e++++ v+p+++fdvq+kRlheYkRq+L +Lhii+l++ + ++p++++
     EHU00795.1 472 ISHTLKRPWINDLDALASLENWVDDAGFCADYQQIKQQNKQDLAAWIAERTDIVVNPAAMFDVQIKRLHEYKRQHLTLLHIIALWQMLYRDPQANL 567
                    ************************************************************************************************ PP

                    --EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEESST CS
  Phosphorylase 482 vprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigtlDG 577
                    +pr+vifg+kaapgYalAk+ii  in+vaev+n+dp+v+d lkvvf+++ynvs+ae++ipaadlseqistagkeASGTgnmk++lnGaltigtlDG
     EHU00795.1 568 CPRVVIFGAKAAPGYALAKNIIYAINQVAEVINHDPRVADCLKVVFIPDYNVSVAERLIPAADLSEQISTAGKEASGTGNMKLALNGALTIGTLDG 663
                    ************************************************************************************************ PP

                    CHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--HHHHHHH-HHHHHHHHHHHCTTTTTTSTTTTHHHHHHHC.TCC-TT-CHHHHHHHHHHHHHHH CS
  Phosphorylase 578 anvEiaeevgeenifiFGltaeeveelkkkgynpkelyekdpelkevldalesgtfsekekeefkelvdsll.ekkDeylvlaDfesYveaqekve 672
                    anvEiae+vge+nifiFG+t+e+v++lk+ +y+p ++ ++d +l+++l+ale+gtfs +++++f+ l++sl  e+ D + vlaDf++Y++aq+++e
     EHU00795.1 664 ANVEIAEQVGEDNIFIFGHTVEQVQALKAGHYDPVQWRTNDVQLDQALQALENGTFSAGDTHAFDLLLNSLGpENGDPWRVLADFRHYLNAQQRAE 759
                    ***********************************************************************9899********************* PP

                    HHHCSHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTT CS
  Phosphorylase 673 eaYkdkkewakksilniaksgkFssDrtikeYaeeiWk 710
                    + ++dk++w++ +iln+a++g+Fs+Dr+i++Y+++iW+
     EHU00795.1 760 ALWADKQAWTRAAILNTARCGMFSADRAIRHYQQRIWQ 797
                    *************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 6193.26
//
Query:       EHU00796.1  [L=942]
Description: ATP-dependent transcriptional activator of the maltose regulon [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-111  370.6  28.6   8.1e-111  370.6  28.6    2.2  2  TPR_MalT  MalT-like TPR region
    6.6e-06   26.6   0.1    6.6e-06   26.6   0.1    4.6  5  AAA_16    AAA ATPase domain
    1.8e-05   25.1  26.0     0.0099   16.4   0.6    6.1  5  TPR_19    Tetratricopeptide repeat
    2.4e-05   24.5  25.4    0.00086   19.5   1.3    5.9  4  TPR_12    Tetratricopeptide repeat
     0.0015   18.8   1.5      0.028   14.7   0.0    3.3  3  AAA_22    AAA domain
      0.002   18.2   0.8         12    6.4   0.1    4.9  5  TPR_8     Tetratricopeptide repeat
     0.0028   18.1   0.0          2    9.0   0.0    3.1  2  DUF1843   Domain of unknown function (DUF1843)
     0.0067   16.1   0.0        1.5    8.5   0.0    2.3  2  RPN7      26S proteasome subunit RPN7
     0.0068   16.3   0.0      0.013   15.5   0.0    1.4  1  ATPase_2  ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.079   12.5   0.0    2.4  2  AAA_25    AAA domain
       0.11   12.4   3.0       0.19   11.6   0.1    2.9  3  NACHT     NACHT domain
       0.15   12.4   0.0       0.44   10.9   0.0    1.8  1  AAA_19    AAA domain
       0.15   12.8  35.7        9.2    7.2   0.0    7.9  6  TPR_4     Tetratricopeptide repeat
       0.54   10.5   6.7         15    5.9   0.0    4.9  5  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.7       1.4   1.7e+03     118     118 ..     364     364 ..     309     436 .. 0.58
   2 !  370.6  28.6  6.3e-114  8.1e-111       1     335 [.     449     783 ..     449     784 .. 1.00

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
    TPR_MalT 118 l 118
                 +
  EHU00796.1 364 A 364
                 1 PP

  == domain 2  score: 370.6 bits;  conditional E-value: 6.3e-114
    TPR_MalT   1 geiaalrAllaiasgdaeralelArqALallpeddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheA 99 
                 ge++al A++ai+ g+a++a++lA  AL+ lpe+++++ri+at+v+Ge+ +++G+l ++l+ + ++e++ar++d++h +l++l+qq+eil+aqG+L+ A
  EHU00796.1 449 GEFNALLAQVAINDGNADDAERLAMLALDALPESRHYSRIVATSVHGEILHCKGELSNSLALMCQTEHMARREDAWHYVLWSLIQQSEILFAQGFLQTA 547
                 8************************************************************************************************** PP

    TPR_MalT 100 letyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetllekaeelaresnfhv 198
                 +et+e+a++l++ q+l+++pl++fll+++a+ll+ w++L+eAeq+++ G+++l+ ++p+++++++ ll++ a+a+G+l++A tll+++e+l+++ ++h 
  EHU00796.1 548 YETQERAFALVKAQHLSHFPLHEFLLRIRAQLLWAWGRLDEAEQAARDGMKVLQGFQPQQQIQCLGLLVQSAIARGNLDNARTLLNRLENLLNNGRWHH 646
                 *************************************************************************************************** PP

    TPR_MalT 199 dwlanaeevrvrlwlaqgdlaaaerwleaaelpsdddnhflelelrnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgree 297
                 dwlana++vrv++w+++gdl++a++wl+++++p++++nhfl+ ++rn+ar++++lg+y eA+ +l++L ++a++l+++++l+++l+L+++++++++++ 
  EHU00796.1 647 DWLANADKVRVLYWQMTGDLQSARDWLRQTPKPASASNHFLQGQWRNVARAQILLGQYTEAEVILDELNDNARALQLMSDLNRNLLLLNQIYWETDQRA 745
                 *************************************************************************************************** PP

    TPR_MalT 298 eAlaaLeqALeLAepegyirsFvdeGeplakLLkelkk 335
                 +A++aL  AL+LA ++g+i++Fv +Ge +a++L++l++
  EHU00796.1 746 KAQQALLSALNLARSTGFISHFVVQGETMAQQLRQLLQ 783
                 ***********************************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   5.2e-09   6.6e-06      20     166 ..      28     152 ..      15     158 .. 0.63
   2 ?   -0.5   0.2       1.1   1.4e+03      64     122 ..     159     214 ..     138     269 .. 0.61
   3 ?    0.3   0.0       0.6   7.7e+02      37      89 ..     273     319 ..     273     393 .. 0.53
   4 ?   -2.5   0.1       4.4   5.7e+03      70     106 ..     569     604 ..     544     647 .. 0.49
   5 ?    0.4   0.5       0.6   7.7e+02      42     107 ..     674     747 ..     669     804 .. 0.47

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.2e-09
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasr 118
                 ++g  +lvl++ ++G GK++l+ +++    + g++ l +   q e+ + y  l+ al + +  +  +++      ++  ++ ++ +             
  EHU00796.1  28 AAGNYRLVLVTSPAGYGKTTLISHWAADKAELGWYSLDESDNQTERFADY--LVAAL-Q-QATQGCCRR------SEVLAQKRQYV------------N 104
                 345559********************533333555566666666444444..22222.2.222222222......22223233333............6 PP

      AAA_16 119 llellkrllallsrderplvlvlDdlqwade.aslqllaaLlrlleskp 166
                 l++l+++l++ l++ ++pl l++Dd + +   a +++++++lr +   +
  EHU00796.1 105 LNALFTQLFNDLQEWHKPLWLIIDDYHHITNpAIHDAMRFFLRHQPE-N 152
                 *********888888************98874666668888888665.3 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
      AAA_16  64 esaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllel 122
                 ++++p + +a++  re+ll+   ++++   ++++++++ ++l   ++la++e  rl++ 
  EHU00796.1 159 SRNLPQLGIANLRVREQLLELSSQQLAF-THQEAQAFFAARLP--APLASDETGRLCDD 214
                 4556666777777788888888777666.56666666666666..34444444333333 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.6
      AAA_16  37 Ksslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde.....a 89 
                 Ks+l+r+l  al ++    ++g+            +++ ++r +l+ q  d+     +
  EHU00796.1 273 KSALLRSLNAALIAE----VTGEENGQ-------RWLEEIERQGLFLQRMDDsgqwfS 319
                 888999888888887....44444444.......366666666666666655333330 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.4
      AAA_16  70 salaqalareellrqlldeaesaeleawrekleeala 106
                   ++  + r +ll + ++ +e+ +++++  k ++ ++
  EHU00796.1 569 HEFLLRI-RAQLLWAWGRLDEAEQAARDGMKVLQGFQ 604
                 4444444.33444444444444444433333333333 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.6
      AAA_16  42 rellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.............a 107
                 r+ +++++++  +fl+g+++   +a   ++ l q+ ++e +l +l+d+a++ +l  +  + +                 a
  EHU00796.1 674 RQTPKPASAS-NHFLQGQWRNVARA---QIlLGQYTEAEVILDELNDNARALQLMSDLNRNLL--LlnqiywetdqrakA 747
                 5556666666.67888888888333...44344444444444444444333222222222222..122444433222221 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.9     0.002       2.5      26      65 ..     450     489 ..     421     491 .. 0.89
   2 ?    3.7   0.7     0.069        88      30      50 ..     575     595 ..     538     610 .. 0.71
   3 !    8.6   0.8     0.002       2.6      24      61 ..     608     644 ..     584     646 .. 0.70
   4 !   16.4   0.6   7.7e-06    0.0099       5      56 ..     664     719 ..     661     727 .. 0.74
   5 ?    2.0   2.5      0.24   3.1e+02      17      54 ..     720     757 ..     715     761 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.002
      TPR_19  26 earllLAeallalgqldeAealLdalpeedpddaryasLl 65 
                 e  +lLA++ ++ g+ d+Ae+l   ++++ p +  y++  
  EHU00796.1 450 EFNALLAQVAINDGNADDAERLAMLALDALPESRHYSRIV 489
                 67789*****************999999999988887765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.069
      TPR_19  30 lLAeallalgqldeAealLda 50 
                   A++l+a g+ldeAe++  +
  EHU00796.1 575 IRAQLLWAWGRLDEAEQAARD 595
                 359*************98655 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.002
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddary 61 
                 +   + lL++  +a g+ld A+ lL++l +   +  r+
  EHU00796.1 608 QIQCLGLLVQSAIARGNLDNARTLLNRLENLLNN-GRW 644
                 44455689*******************9987777.555 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 7.7e-06
      TPR_19   5 gdyaeAlalleq....alqedpknaearl.lLAeallalgqldeAealLdalpeedp 56 
                 gd+++A + l+q    a +++++ +  +  + A+a++ lgq++eAe +Ld+l + ++
  EHU00796.1 664 GDLQSARDWLRQtpkpA-SASNHFLQGQWrNVARAQILLGQYTEAEVILDELNDNAR 719
                 77788888888855543.55666444444236*******************988776 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.24
      TPR_19  17 alqedpk.naearllLAeallalgqldeAealLdalpee 54 
                 alq   + n +++l L ++++++ q ++A+++L  +++ 
  EHU00796.1 720 ALQLMSDlNRNLLL-LNQIYWETDQRAKAQQALLSALNL 757
                 45555553555555.99****************988775 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.5    0.0016         2       6      70 ..     454     513 ..     450     520 .. 0.87
   2 !   19.5   1.3   6.7e-07   0.00086       3      74 ..     528     599 ..     526     601 .. 0.90
   3 ?    3.1   0.2     0.091   1.2e+02      54      70 ..     658     675 ..     612     676 .. 0.57
   4 ?    3.2   4.9     0.087   1.1e+02       8      77 .]     693     760 ..     690     760 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 l  la+v    g+ d+A++l   al++    ++  h+  + +    g++++  g++   l+l  +
  EHU00796.1 454 L--LAQVAINDGNADDAERLAMLALDAL---PESRHYSRIVATSVHGEILHCKGELSNSLALMCQ 513
                 4..9************************...9999***************999999888877666 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 6.7e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +++l +  ++l+++g ++ A e  e+a +++++ +  + pl    lr  ++l++a+gr++eA+++ ++ +++
  EHU00796.1 528 LWSLIQQSEILFAQGFLQTAYETQERAFALVKAQHLSHFPLHEFLLRIRAQLLWAWGRLDEAEQAARDGMKV 599
                 567778899**********************99998766*************************99987765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.091
      TPR_12  54 ly.ralgryeeAlellee 70 
                 ly +++g+++ A+++l++
  EHU00796.1 658 LYwQMTGDLQSARDWLRQ 675
                 452467999999999988 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.087
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrl.lGpdhpltattlrnLgrlyralgryeeAlelleealaiaek 77 
                 n+a +   lg+y+eA+ +l++  + ar+l l  d   + + l  L ++y+++++ ++A+++l  al++a++
  EHU00796.1 693 NVARAQILLGQYTEAEVILDELNDNARALqLMSD---LNRNLLLLNQIYWETDQRAKAQQALLSALNLARS 760
                 6677777899999999999999999999966655...567999999*********************9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.2e-05     0.028       6     112 ..      33     145 ..      28     164 .. 0.68
   2 ?   -1.5   0.0       2.2   2.8e+03      21     101 ..     631     715 ..     629     752 .. 0.60
   3 ?    0.0   0.6      0.73   9.3e+02      80     113 ..     772     803 ..     741     818 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelka............erlsseellealeqalrarav 91 
                 ++++vt ++G GKTtl+   +            ++e+  + l +s    + ++  l+ al++ + +            +  ++ +l+++l + l++ ++
  EHU00796.1  33 RLVLVTSPAGYGKTTLISHWAAD----------KAELGWYSLDESDnQTERFADYLVAALQQATQGccrrsevlaqkrQYVNLNALFTQLFNDLQEWHK 121
                 67899*************99998..........566666666666634556677777777777777777888888555555666666555555555555 PP

      AAA_22  92 ielliiDEaqhlr.s..eealeeL 112
                 +  liiD+ +h++ +  ++a++++
  EHU00796.1 122 PLWLIIDDYHHITnPaiHDAMRFF 145
                 9**********9541453333333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
      AAA_22  21 llrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.....ielliiDEaq 101
                 ll+rl + l++   + +  ++++ v+v   + t+  + +r+ lr++  +++a   s++ l  + ++ +ra+        + +i+DE  
  EHU00796.1 631 LLNRLENLLNNGRWHHDwlANADKVRVLYWQMTGDLQSARDWLRQTPKPASA---SNHFLQGQWRNVARAQILlgqytEAEVILDELN 715
                 5556666655554444457666666666666665555556666666666666...555555666666666655666655556666654 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.73
      AAA_22  80 ealeqalraravielliiDEaqhlrseealeeLr 113
                 e+++q+lr+     l  +DE +h r  ++l+e+ 
  EHU00796.1 772 ETMAQQLRQLLQ--LNTLDELDHHRARRILNEIN 803
                 455666666655..88888888874477887773 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.1   1.4e+03       4      29 ..     452     477 ..     449     480 .. 0.85
   2 ?    4.0   0.0     0.054        69       8      25 ..     577     594 ..     575     599 .. 0.87
   3 ?   -2.2   0.0       5.4   6.9e+03       6      25 ..     614     633 ..     610     635 .. 0.76
   4 ?    0.6   0.0      0.69   8.8e+02       7      24 ..     694     711 ..     691     717 .. 0.83
   5 !    6.4   0.1    0.0094        12       9      33 ..     736     760 ..     729     761 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                   +l+++ ++ g+ + A+   + al+
  EHU00796.1 452 NALLAQVAINDGNADDAERLAMLALD 477
                 6799*************988887775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.054
                 HHHHHHTT-HHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyye 25 
                 +++++  g+++eA+++ +
  EHU00796.1 577 AQLLWAWGRLDEAEQAAR 594
                 89************9876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.4
                 HHHHHHHHTT-HHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyye 25 
                 +l +  +  g++++A   ++
  EHU00796.1 614 LLVQSAIARGNLDNARTLLN 633
                 5667778889*****98776 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.69
                 HHHHHHHTT-HHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyy 24 
                  +++ + lg+y eA+  +
  EHU00796.1 694 VARAQILLGQYTEAEVIL 711
                 6888999*******8766 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0094
                 HHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldpd 33 
                 +iy+++ +  +A++++  al l+++
  EHU00796.1 736 QIYWETDQRAKAQQALLSALNLARS 760
                 8********************9875 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0016         2       4      37 ..     358     391 ..     357     399 .. 0.76
   2 ?    5.6   0.0     0.018        23       7      32 ..     616     641 ..     613     644 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0016
     DUF1843   4 gvaiqqAiasGDLakMKalaaqaeqqLaeygdia 37 
                 g ai+ A+asGD + ++ ++ +    L ++++++
  EHU00796.1 358 GEAIHHARASGDAEMLRDVLIEHAWSLFNQSELP 391
                 78**********9999998877766666666665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
     DUF1843   7 iqqAiasGDLakMKalaaqaeqqLae 32 
                  q+Aia+G L++ ++l+ + e+ L++
  EHU00796.1 616 VQSAIARGNLDNARTLLNRLENLLNN 641
                 59****************99999986 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.013        17      67     106 ..     603     642 ..     576     652 .. 0.79
   2 !    8.5   0.0    0.0012       1.5      44     123 ..     658     753 ..     649     756 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
                 -SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS-- CS
        RPN7  67 tslkhkidmllnlirvaiffndwdlvskylekakellekg 106
                  ++++ i++l  l++ ai++++ d + + l+++++ll +g
  EHU00796.1 603 FQPQQQIQCLGLLVQSAIARGNLDNARTLLNRLENLLNNG 642
                 58899********************************995 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
                 HHHHHCT-HHHHHHHHHTCCCC--SHHHHHHH.HHHHHHHHHHTT-HHHHHHHHHHHHCSSS---................HHHHHHHHHHHHHHH CS
        RPN7  44 ehYlkigdleeAlkaysrireyctslkhkidm.llnlirvaiffndwdlvskylekakellekggd...............werknrlkvyeGlal 123
                  ++ ++gdl++A  +++++ ++ + ++h ++  + n+ r +i ++++  +++ l+++++     +                we+  r k+ ++l++
  EHU00796.1 658 LYWQMTGDLQSARDWLRQTPKPASASNHFLQGqWRNVARAQILLGQYTEAEVILDELNDNARALQLmsdlnrnllllnqiyWETDQRAKAQQALLS 753
                 58999*************************96599*******************999987777555666999999999999999999999999876 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.8e-06     0.013      11     131 ..      23     134 ..      17     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.8e-06
    ATPase_2  11 leeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilk.eksklvfkaiel 108
                 ++++   ++++ ++++ p g GKt+L+ + +  + +++    y  + ++ +++++ ++      +  l++a++   ++ e+  + + ++  ++++ +++
  EHU00796.1  23 IRKLSAAGNYRLVLVTSPAGYGKTTLISHWAADKAELG---WYSLDESDNQTERFADY-----LVAALQQATQGCCRRSEV--LAQkRQYVNLNALFTQ 111
                 5666778999**********************998866...57777766666666666.....555688888888888777..3334777788999*** PP

    ATPase_2 109 llekikkkgkkiiiiiDelqkli 131
                 l++++++  k + +iiD+   + 
  EHU00796.1 112 LFNDLQEWHKPLWLIIDDYHHIT 134
                 ******************98887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.2e-05     0.079      24     119 ..      21     128 ..      10     158 .. 0.61
   2 ?   -1.6   0.1       1.4   1.7e+03      70      95 ..     653     678 ..     643     727 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
      AAA_25  24 wlvkgllpag..elallaGapgtGKttlaldlalava.tGkpwlg..pvap.eqgkVlyvsaEdsedelrrRlravgeal.....rddarllvldlagv 111
                  l++ l +ag   l+l++ + g GKttl +++a++ a +G+  l+  + ++ + +  l+ ++ ++ ++  rR + + +++     ++  + l+ dl+++
  EHU00796.1  21 RLIRKLSAAGnyRLVLVTSPAGYGKTTLISHWAADKAeLGWYSLDesDNQTeRFADYLVAALQQATQGCCRRSEVLAQKRqyvnlNALFTQLFNDLQEW 119
                 5555555555224899*********************88887766663333133444444455555555566555554444455555555555556665 PP

      AAA_25 112 .eslpLfak 119
                  ++l L+ +
  EHU00796.1 120 hKPLWLIID 128
                 555555553 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
      AAA_25  70 eqgkVlyvsaEdsedelrrRlravge 95 
                  +++Vly++  ++ +  r +lr++ +
  EHU00796.1 653 DKVRVLYWQMTGDLQSARDWLRQTPK 678
                 67899999999999899999987654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00015      0.19       1      95 [.      33     135 ..      33     194 .. 0.67
   2 ?   -2.4   0.0       3.1     4e+03      40      71 ..     238     268 ..     221     284 .. 0.80
   3 ?   -1.5   0.2       1.7   2.1e+03      85     132 ..     709     746 ..     668     801 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                 SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C....................CHHHHCCS CS
       NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse....................vwavllel 79 
                 rlv+++ +aG GKTtL+ +    wa++k + g      + sl e   +++  ++ad+l++ l++  +   +                     ++ l+e 
  EHU00796.1  33 RLVLVTSPAGYGKTTLISH----WAADKAELG------WYSLDESDNQTE--RFADYLVAALQQATQGCCRrsevlaqkrqyvnlnalftqLFNDLQEW 119
                 68899999*******9765....666664444......445555554432..35555555544444444443555555555555555555588999999 PP

                 CCCEEEEEE-STT-SS CS
       NACHT  80 perlLlilDglDelvt 95 
                  + l+li+D++  + +
  EHU00796.1 120 HKPLWLIIDDYHHITN 135
                 99999*****988875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
                 EETTTTTTS-...-HCHHHCCCCTS--SSS-C CS
       NACHT  40 lslrelsrsgnarsladllfsqlpepaapvse 71 
                 +s r+ls ++++ +l d+l+++ ++    +++
  EHU00796.1 238 HSARRLSGINAS-HLNDYLVEEVLDNVTLPTR 268
                 567888888877.9999999998887666655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.7
                 EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT  85 lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpral 132
                  ilD l++ ++ l+          +s+l  ++ll  + + + +  ra 
  EHU00796.1 709 VILDELNDNARALQL---------MSDLN-RNLLLLNQIYWETDQRAK 746
                 444444444444444.........43332.224433344333333333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00035      0.44       9      43 ..      31      65 ..      24     156 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvelggvkpe 43
                + +++lvt ++G GKT+++ h  a   elg  +++
  EHU00796.1 31 NYRLVLVTSPAGYGKTTLISHWAADKAELGWYSLD 65
                56789****************99887777766554 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.1       6.3   8.1e+03       1      20 [.     341     360 ..     341     366 .. 0.78
   2 ?    6.2   0.5     0.015        19       6      24 ..     454     472 ..     452     472 .. 0.93
   3 ?    6.2   5.7     0.015        19       5      25 ..     574     594 ..     572     595 .. 0.90
   4 ?    7.2   0.0    0.0072       9.2       3      25 ..     611     633 ..     609     634 .. 0.89
   5 ?    4.9   0.1     0.041        53      11      26 .]     660     675 ..     655     675 .. 0.87
   6 ?    6.1   0.0     0.017        21       8      26 .]     695     713 ..     692     713 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.3
       TPR_4   1 arallaLArallalGdldeA 20 
                 ++++ a A  + a+G + eA
  EHU00796.1 341 PALHRAAATSWMAQGFPGEA 360
                 57889999999999977777 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
       TPR_4   6 aLArallalGdldeArall 24 
                 +LA+++   G++d+A++l+
  EHU00796.1 454 LLAQVAINDGNADDAERLA 472
                 79***************96 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.015
       TPR_4   5 laLArallalGdldeAralle 25 
                   +A++l+a G+ldeA+++++
  EHU00796.1 574 RIRAQLLWAWGRLDEAEQAAR 594
                 679***************998 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0072
       TPR_4   3 allaLArallalGdldeAralle 25 
                 +l +L + + a+G+ld Ar+ll 
  EHU00796.1 611 CLGLLVQSAIARGNLDNARTLLN 633
                 678999***************96 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.041
       TPR_4  11 llalGdldeAraller 26 
                 ++ +Gdl  Ar++l++
  EHU00796.1 660 WQMTGDLQSARDWLRQ 675
                 6789***********8 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.017
       TPR_4   8 ArallalGdldeAraller 26 
                 Ara+ +lG++ eA+ +l++
  EHU00796.1 695 ARAQILLGQYTEAEVILDE 713
                 9*************99986 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.5   8.3e+03      60      67 ..     453     460 ..     408     472 .. 0.48
   2 ?    2.9   0.1       0.1   1.3e+02      43      81 ..     597     634 ..     540     635 .. 0.79
   3 ?    5.9   0.0     0.012        15      36      81 ..     663     713 ..     658     714 .. 0.81
   4 ?    0.4   0.2      0.59   7.6e+02      16      52 ..     721     758 ..     718     764 .. 0.81
   5 ?   -0.6   0.1       1.3   1.6e+03      37      59 ..     790     812 ..     779     813 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.5
                 HHHHHHHH CS
      ANAPC3  60 ylfAqcll 67 
                  l+Aq+++
  EHU00796.1 453 ALLAQVAI 460
                 33444444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.1
                 HHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  43 yellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +++l+ + +  + ++c+ l+ q++++ ++++ A+++L +
  EHU00796.1 597 MKVLQGF-QPQQQIQCLGLLVQSAIARGNLDNARTLLNR 634
                 5666666.6678889*******************99976 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.012
                 TT-HHHHHHHHHCT.SHHHC-H....HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  36 ngqykrAyellrka.klnsksl....gcrylfAqcllkLkkyeeAiaaLek 81 
                 +g+ ++A ++lr++ k +s s     g +   A++++ L++y eA+ +L++
  EHU00796.1 663 TGDLQSARDWLRQTpKPASASNhflqGQWRNVARAQILLGQYTEAEVILDE 713
                 688999999999996655555456778888889*************99986 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.59
                 H.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3  16 laaetespedayllAlclylngqykrAyellrka.kln 52 
                 l+ +++ + +++ll + + ++ q  +A++ l +a +l+
  EHU00796.1 721 LQLMSDLNRNLLLLNQIYWETDQRAKAQQALLSAlNLA 758
                 44667778899999***************999996665 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.3
                 T-HHHHHHHHHCTSHHHC-HHHH CS
      ANAPC3  37 gqykrAyellrkaklnskslgcr 59 
                  +++rA ++l++ +++++++ ++
  EHU00796.1 790 LDHHRARRILNEINKYHRHKFAH 812
                 589**********9999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 6918.85
//
Query:       EHU00797.1  [L=410]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-34  120.1  47.0      2e-20   73.0  19.0    2.0  2  MFS_1     Major Facilitator Superfamily
    5.6e-05   21.6   7.3     0.0018   16.7   0.3    2.4  2  OATP      Organic Anion Transporter Polypeptide (OATP) family
  ------ inclusion threshold ------
        2.2    8.5   5.7       0.15   12.3   0.4    1.8  2  DUF4381   Domain of unknown function (DUF4381)
        2.5    7.9   8.9        4.6    7.0   0.0    3.3  3  DUF3094   Protein of unknown function (DUF3094)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0  19.0   4.5e-24     2e-20       1     207 [.      33     242 ..      33     257 .. 0.80
   2 !   51.1  24.4     2e-17   9.1e-14       9     176 ..     242     406 ..     232     410 .] 0.83

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 4.5e-24
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGl 97 
                 ++++++++ +  ++l +++p +l++++ +s ++igl++ +y  +a+++++ +G  +d++   ++l  g++++++g +ll++  ++++ ++l + +l G+
  EHU00797.1  33 VAFSHCCNDFIQAMLPSIYP-LLKTNFALSYAQIGLITLIYQMTASLLQPWIGLYTDKHPKPWLLPSGMVATLIGiGLLAS--APHFsVVLMASALIGV 128
                 5899****************.9*************************************5555************444444..55555*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......kg 190
                 g++++ p +  +++  + + + g a + +++g  +G++++pl++++l+   g  av +++ i+++ +++l ++  ++ ++ ++  ++  ++      ++
  EHU00797.1 129 GSATFHPEASRVARMASGG-QFGTAQSTFQVGGYVGTAFAPLVAAMLIIPHGQLAVGWLMLIALFAVIILSGISRWTVKHGHAHMKKHNQRslralsSR 226
                 *988888888888887777.****************************999999***************999999998888888887777544444433 PP

       MFS_1 191 tgpaplvpawkallkdp 207
                 +++ +l+   + ll  +
  EHU00797.1 227 DVKLALSV-VGVLLLAK 242
                 33333333.33333333 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 2e-17
       MFS_1   9 alarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpa 105
                  +++ + ++++ + +l e +++ + e+++ l ++ ++ a+++l++G+++dr+Gr+ v+++++l+ + +  ll+ + ++l++ +vl v  Gl  +++f+a
  EHU00797.1 242 KFTYIASISNYYIfYLVERFQLPVPEAQIYLFTFLAAVAIGTLVGGPVGDRIGRKAVVWISFLGVIPF-SLLM-PhANLFWTAVLTVCIGLVFSSAFAA 338
                 3444445555666688****************************************************.4444.329999******************* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                  ++++ ++ p++  + a  +++++f++G i +++lg +  +++g + v+ +++++ ll+fv   ll+p+++
  EHU00797.1 339 LVVYAQEVLPGRTGMVAGIMFGTMFGIGGIAAAALGKFA-DWYGITTVYNACGFLPLLGFVT--LLMPDTR 406
                 ***********5555555667789999999999997765.5******************884..6666554 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   3.9e-07    0.0018       6      90 ..      33     118 ..      28     157 .. 0.86
   2 !    8.2   1.2   0.00014      0.64     298     368 ..     237     303 ..     206     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        OATP   6 lsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgs.lllalPhfis 90 
                 + +  +++ ++ +++ s+   +  +F l+ +++gli+ ++++++ ll   ++ + ++  +P ++  g++ + +g  ll + Phf +
  EHU00797.1  33 VAFSHCCNDFIQAMLPSIYPLLKTNFALSYAQIGLITLIYQMTASLLQPWIGLYTDKHPKPWLLPSGMVATLIGIgLLASAPHFSV 118
                 556667777888889999999***********************************************99999972555679*976 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00014
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 298 lvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklakl 368
                 +++l++ ++i  ++ +++F   yl ++F+l   eA++++ ++++ ++a+G+l+gG +  ++  +a   + +
  EHU00797.1 237 VLLLAKFTYIASISNYYIF---YLVERFQLPVPEAQIYL-FTFLAAVAIGTLVGGPVGDRIGRKAVVWISF 303
                 4567777777777777777...9***************7.78999**********9988876554444444 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   3.3e-05      0.15      17      64 ..     181     227 ..     175     248 .. 0.76
   2 ?   -4.5   0.8         4   1.8e+04      16      34 ..     314     331 ..     312     341 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
     DUF4381  17 papGwwlllaalllllllvlalwllrrrkrn.rreAlreLaalradead 64 
                 +a+Gw +l+a+ ++++l ++  w +++ +++ ++  +r L+al+  + d
  EHU00797.1 181 LAVGWLMLIALFAVIILSGISRWTVKHGHAHmKKHNQRSLRALS--SRD 227
                 799*9999966666999999999999776666888888888888..333 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 4
     DUF4381  16 PpapGwwlllaalllllll 34 
                 P a   w+ ++  ++++l+
  EHU00797.1 314 PHANLFWTAVLT-VCIGLV 331
                 566555665522.333332 PP

>> DUF3094  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.001       4.6      29      48 ..      92     111 ..      87     113 .. 0.91
   2 ?    3.0   2.2     0.018        81      31      46 ..     185     200 ..     182     204 .. 0.85
   3 ?   -1.1   0.1      0.35   1.6e+03      35      46 ..     321     332 ..     315     340 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
     DUF3094  29 rpWlllvvvlavvigLGlls 48 
                 +pWll + ++a  ig+Gll+
  EHU00797.1  92 KPWLLPSGMVATLIGIGLLA 111
                 8*****************95 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.018
     DUF3094  31 WlllvvvlavvigLGl 46 
                 Wl+l+++ av+i  G+
  EHU00797.1 185 WLMLIALFAVIILSGI 200
                 **********998885 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.35
     DUF3094  35 vvvlavvigLGl 46 
                 ++vl+v igL +
  EHU00797.1 321 TAVLTVCIGLVF 332
                 568888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2888.16
//
Query:       EHU00798.1  [L=145]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-06   26.2   0.0    9.7e-06   25.8   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0032   17.4   0.0     0.0043   17.0   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.041   14.6   0.0      0.049   14.3   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
       0.11   12.6   0.0       0.14   12.3   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
       0.15   12.5   0.1       0.34   11.4   0.1    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.7e-09   9.7e-06      27     117 .]      36     123 ..      12     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.7e-09
                     HHHSTTCEEEEEEET..TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  27 sfsleaegllvaeed..geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      fs ++  ++v  +d  g+ iG+  l  +     ++a++ +++  ++  g G+G   l ale++ar +g++++ + ++  n++a+++Y ++ F
      EHU00798.1  36 HFSAPEAATWVLARDsqGKAIGCGALVHVSS---ETAELKRMFSTRDIPGTGAG--VLAALEQIARARGYRALRCSTRRVNTRAVAFYHRCQF 123
                     467777788884444479***********99...9*************999988..5679****************************99976 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-06    0.0043      23     110 ..      34     127 ..      22     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
  Acetyltransf_10  23 rerieegealllvaeeg..gkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                      +++++++ea ++v+ ++  gk +G+++l   +s   ++ ++f  ++  g+G g   l a+e+ a+ +g++  + + +  +  av+fY+++ F++
       EHU00798.1  34 TQHFSAPEAATWVLARDsqGKAIGCGALvHVSSetaELKRMFSTRDIPGTGAG--VLAALEQIARARGYRAlRCSTRRVNtRAVAFYHRCQFQE 125
                      567776666666665554599999997766666677***********999999..58999999999999999888888888************9 PP

  Acetyltransf_10 109 vg 110
                      + 
       EHU00798.1 126 TA 127
                      85 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.049      47     138 .]      36     124 ..       6     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
  Acetyltransf_3  47 eeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymla.psfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                       s+ e+ +w++   ++g  iG+  l +++ e+  ael  m+  ++  g G +  +++al ++a +  g++ l++ +   N++ ++ + ++ f+
      EHU00798.1  36 HFSAPEAATWVLARDSQGKaIGCGALVHVSSET--AELKRMFStRDIPGTGAG--VLAALEQIA-RARGYRALRCSTRRVNTRAVAFYHRCQFQ 124
                     44455778899965444555****999888876..9*******5567666655..555555555.7788*****************99999885 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05      0.14      56     135 ..      50     124 ..      35     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
  Acetyltransf_4  56 e.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFe 135
                     + +++ +G  +l+ + +    + ael+  +   + +  g+g   ++aleq++++ +++ l  ++   n+ +++f+ +  F+
      EHU00798.1  50 DsQGKAIGCGALVHVSS----ETAELKRMFS--TRDIPGTGAGVLAALEQIARARGYRALRCSTRRVNTRAVAFYHRCQFQ 124
                     34899999999997777....999*****96..5788899999********************************987665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.5e-05      0.34       3      76 .]      42     125 ..      40     125 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.5e-05
                     EEEEEEEET..TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHH.HHHTT...SEEE.EE..EEEETHHHHHHHHHHTTEEE CS
  Acetyltransf_7   3 gevfVaedd..gkivGfialslld...aeitrlaVdpeyrgkGiGraL.leaae...kgii.le..qlelnaekaikfYeklGFee 76 
                     + ++V+ +d  gk +G+ al++++   ae++r++   +  g G G    le  +   +g++ l   + ++n+ +a++fY ++ F+e
      EHU00798.1  42 AATWVLARDsqGKAIGCGALVHVSsetAELKRMFSTRDIPGTGAGVLAaLEQ-IaraRGYRaLRcsTRRVNT-RAVAFYHRCQFQE 125
                     5678888888999999999999999988888899999999999885442332.1245665432222223343.99*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1063.88
//
Query:       EHU00799.1  [L=422]
Description: putative liprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-120  401.1   1.9   3.5e-120  400.8   1.9    1.1  1  GHL10           Glycosyl hydrolase-like 10
    3.5e-05   22.9   0.0    5.8e-05   22.2   0.0    1.3  1  Melibiase       Melibiase
     0.0023   18.0   0.0     0.0041   17.2   0.0    1.3  1  DUF4434         Domain of unknown function (DUF4434)
     0.0085   14.8   0.0      0.011   14.4   0.0    1.2  1  Glyco_hydro_66  Glycosyl hydrolase family 66
  ------ inclusion threshold ------
      0.045   13.2   0.0      0.069   12.6   0.0    1.3  1  Alpha_L_fucos   Alpha-L-fucosidase
      0.048   13.6   0.0      0.069   13.1   0.0    1.3  1  GHL15           Hypothetical glycosyl hydrolase family 15


Domain annotation for each model (and alignments):
>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.8   1.9  1.2e-123  3.5e-120       2     310 ..      37     370 ..      36     371 .. 0.96

  Alignments for each domain:
  == domain 1  score: 400.8 bits;  conditional E-value: 1.2e-123
       GHL10   2 lRgvWlanvdsvdll.............dkvqkkeaikkLddlq...lntvyvqvkndgtalypsavakwselktgkkgedpGrDvLaevideahkrnl 84 
                 +RgvWl++v+++d++             + +qk++  +kLd+l+   +ntv++qvk+dgtal+ s++++ws+++tg++g++pG D+L++++deahkr++
  EHU00799.1  37 VRGVWLTTVSRLDWPpiasvnirdealrVSQQKRALTDKLDKLKslgINTVFFQVKPDGTALWASKILPWSDMMTGETGQNPGFDPLQFMLDEAHKRGM 135
                 8**************************95666666555555555555**************************************************** PP

       GHL10  85 kvlaWF...evglnak.....elselvkahPasltvqkrdevktsesaagerlwlnPliPevqdfitklvvevvkrYdvDgvqlDDyfylpesfGydli 175
                 +v+aWF   +v++n+k     el+ +++++Pas+ v +rd+++ts    g+r +l+P+iP+v+d+it++v+evvk+Yd+Dgvq+DDyfy  es+G+ l+
  EHU00799.1 136 RVHAWFnpyRVSVNTKpstvaELNRTLSQQPASVFVLHRDWIRTS----GDRYVLDPGIPDVRDWITSIVAEVVKHYDIDGVQFDDYFY-AESPGSPLN 229
                 ***************999999************************....****************************************.9******** PP

       GHL10 176 dvalYrqetkkealsnkeddlwidWRrdkisqlvkklnatikavkPnvkisvsPagvw.n.............laydeflaDtrrWiekgvideivlqv 260
                 d +++ +++  + +++k+d     WRr +++ l++++++tik  kP+v+++vsPagvw n             +ayde++aDtrrW+++g++d+i++q+
  EHU00799.1 230 DSQTFIRYG--QGFASKAD-----WRRHNTQLLIEQVSHTIKQLKPQVEFGVSPAGVWrNrshdaagsdtrgaAAYDESYADTRRWVQDGLLDYIAPQI 321
                 *********..69******.....**********************************98*************************************** PP

       GHL10 261 YreklaafaaeldvlakreskevkptavglliGlaakkvpeplkidaqwv 310
                 Y++ ++++aa++dvla++++++vkpt+++l+iG+a +kv+ p k++++w+
  EHU00799.1 322 YWP-FSRSAARYDVLANWWANVVKPTKTRLYIGIALYKVGVPAKNEPEWT 370
                 ***.*********************************************7 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.9e-08   5.8e-05     105     200 ..     122     226 ..     107     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.9e-08
   Melibiase 105 gleelakevhekglkfGlWvePemvsad...se...l...yrehPdwvlqvedrsrtesrnqlvLdlsrpdvvdyiievldnllkeaqidyvkWDmnrh 194
                  l+ + +e+h++g++   W++P  vs++   s+   l     + P  v+  +     +s +++vLd + pdv+d i+ ++++++k+ +id v++D    
  EHU00799.1 122 PLQFMLDEAHKRGMRVHAWFNPYRVSVNtkpSTvaeLnrtLSQQPASVFVLHRDWIRTSGDRYVLDPGIPDVRDWITSIVAEVVKHYDIDGVQFDDYFY 220
                 4778899*****************99883333322231113578888887776677778899********************************97665 PP

   Melibiase 195 lteigs 200
                  +  gs
  EHU00799.1 221 AESPGS 226
                 555555 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.4e-06    0.0041      24      82 ..      74     138 ..      64     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHTT--EEEES-SEETTEESS--HHHHT.T---......-SB-HHHHHHHHHHHTT-EEE CS
     DUF4434  24 eklrelkelgmntlilqrvsykgkafypskllke.kfek......kakdlveaiLdaAdklgmkvf 82 
                  kl++lk+lg+nt+++q++  +++    sk+l++  + +      +  d+++ +Ld+A k gm+v+
  EHU00799.1  74 DKLDKLKSLGINTVFFQVKPDGTA-LWASKILPWsDMMTgetgqnPGFDPLQFMLDEAHKRGMRVH 138
                 6899************96554444.44444444422222233323566*****************8 PP

>> Glyco_hydro_66  Glycosyl hydrolase family 66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-06     0.011     115     264 ..      71     219 ..      60     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-06
                     HHHHHHHHHHHTT--EEEETS--SBTTB-S-.SSSEEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETTSSBTTBSTTSB-E.E CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Glyco_hydro_66 115 eiekeieqLnryhinavqfyDwqykhhkplegtveqpaeswkdlanrkvytsavkeyiaaahskgikamaYnliyaalkdeaeadgvkkewal.f 208
                       ++++++L+ + in v+f+ ++ + + + + +    ++  +   +++   + ++ + ++ah++g++  a+   y ++ + ++ + v +   +  
      EHU00799.1  71 ALTDKLDKLKSLGINTVFFQ-VKPDGTALWASKILPWSDMMTGETGQNPGFDPLQFMLDEAHKRGMRVHAWFNPYRVSVN-TKPSTVAELNRTlS 163
                     55677888888888888776.66666666662222233333334445566778888999999999999999999999999.66666655444426 PP

                     ETTEEEE.............EEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S- CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_66 209 kdknateqdkvklpseksdiylmdpsnkeWqkyiieqnkkvvkafdfDGvhiDqlG 264
                     ++  ++  ++ +   ++ d y++dp+ ++ +++i +  ++vvk++d DGv+ D + 
      EHU00799.1 164 QQPASVFVLHRDWIRTSGDRYVLDPGIPDVRDWITSIVAEVVKHYDIDGVQFDDYF 219
                     66666667777777779999*********************************875 PP

>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.069     119     221 ..      94     221 ..      80     282 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                    T--BSS--TT-S-BGGG......ST-S-HHHHHHHHHHHTT-EEEEEEESS....................-TT-TT--SS--SHHHHHHHH.... CS
  Alpha_L_fucos 119 dgfalwdskvsdwnsvd.....agPkrDivkelakavrkeglkfglyysla....................dwknpdyyedkkkeedrktekkek. 188
                    dg alw sk+ +w+ +      ++P  D ++ + ++++k+g+++++ +  +                                          ++ 
     EHU00799.1  94 DGTALWASKILPWSDMMtgetgQNPGFDPLQFMLDEAHKRGMRVHAWFNPYrvsvntkpstvaelnrtlsqQ---------------------PAs 168
                    99***********99887888899**********************99988554444443333332222220.....................223 PP

                    .......................HHHHHHHHHHHHHHHHSTTEEEEEES--SH CS
  Alpha_L_fucos 189 ....................kskkykektlnqlkelvtkYkpdilwfDgewek 221
                                           + ++++++ + e+v++Y+ d + fD  + +
     EHU00799.1 169 vfvlhrdwirtsgdryvldpGIPDVRDWITSIVAEVVKHYDIDGVQFDDYFYA 221
                    44444455555555555555444555666666777777777766666644444 PP

>> GHL15  Hypothetical glycosyl hydrolase family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.069      54     130 ..     177     256 ..     141     307 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
       GHL15  54 kriskyqghyqmdvsnpefrewWvksalnelrdsgiDGvfaDndvktlsyysldlplsgvae.......ii.daklregldellk 130
                  r   + + y  d   p++r w +  +++ +++ +iDGv  D ++ + s  s   pl++ ++       ++ +a++r + ++ll 
  EHU00799.1 177 IRT--SGDRYVLDPGIPDVRDWITSIVAEVVKHYDIDGVQFDDYFYAESPGS---PLNDSQTfirygqgFAsKADWRRHNTQLLI 256
                 333..4677899999999*9987777777777777*********99766533...455444433333332245667666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3050.99
//
Query:       EHU00800.1  [L=54]
Description: uncharacterized DUF2256 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-17   61.0  11.6    9.8e-17   60.8  11.6    1.1  1  DUF2256   Uncharacterized protein conserved in bacteria (DUF2
     0.0058   17.8   0.9     0.0072   17.5   0.9    1.2  1  Ecl1      ECL1/2/3 zinc binding proteins
  ------ inclusion threshold ------
       0.02   14.9   6.4      0.029   14.4   6.4    1.3  1  zf-MYND   MYND finger


Domain annotation for each model (and alignments):
>> DUF2256  Uncharacterized protein conserved in bacteria (DUF2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8  11.6   1.6e-20   9.8e-17       1      40 []       7      46 ..       7      46 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.6e-20
     DUF2256  1 kKselpsKiCavCgrpftwRkkWekdWdeVkyCSerCrrn 40
                +K+ lp +   +C++p+twRkkW+k+Wd+V yCSerCrr+
  EHU00800.1  7 NKQGLPVRYYRQCHKPMTWRKKWAKCWDQVLYCSERCRRQ 46
                6899999999****************************96 PP

>> Ecl1  ECL1/2/3 zinc binding proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.9   1.2e-06    0.0072      19      31 ..      34      46 ..      27      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
        Ecl1 19 nsiLYCSEaCRrk 31
                +++LYCSE+CRr+
  EHU00800.1 34 DQVLYCSERCRRQ 46
                789********97 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   6.4   4.9e-06     0.029       3      31 ..      18      48 ..      17      52 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.9e-06
                TT--..B-SCE-TTTS.-SEESSHHHHHHCH CS
     zf-MYND  3 vCgk.aealkkCagCk.svfYCskeCqradw 31
                +C+k     kk a+C  +v YCs+ C+r+ +
  EHU00800.1 18 QCHKpMTWRKKWAKCWdQVLYCSERCRRQRR 48
                788833333488999549**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 434.19
//
Query:       EHU00801.1  [L=743]
Description: putative formate dehydrogenase oxidoreductase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-29  102.2   0.0    5.8e-29  101.3   0.0    1.4  1  Molybdopterin    Molybdopterin oxidoreductase
    1.8e-09   37.6   0.0    1.4e-08   34.7   0.0    2.4  2  Molydop_binding  Molydopterin dinucleotide binding domain
  ------ inclusion threshold ------
      0.012   15.4   0.1        4.9    6.9   0.0    2.7  3  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
      0.024   14.9   0.0      0.072   13.4   0.0    1.8  1  CpcD             CpcD/allophycocyanin linker domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   1.3e-32   5.8e-29       1     373 [.      80     462 ..      80     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1.3e-32
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCC CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaqqtigsds 96 
                    Rl++Pm+  +    + +++++W++A+++i ++l+     ++pd+v ++ sg++  +e+ ++ + +++ +g +n+   ++ ++ p++    +  ++s
     EHU00801.1  80 RLTHPMKY-DPV-TDTYQPIEWQTAFNEIGERLRS---YHNPDSVEFYTSGRAS-NEAAFLWQLFAREFGTNNFPDCSNMCHEPTS----VGLPES 165
                    9999*999.666.9*********************...9*******76666665.*****99999999999877777777777653....345566 PP

                    CTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-H..................CGGGCSEEEEEHTTTHHHHHH CS
  Molybdopterin  97 rsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryae..................llkfadewlaikpgtdaalal 174
                          + +l d+++ dl+i +G+N+ +++p +   ++++++k++ak+++i p  +                   +++ a+ + +i+ g daa++ 
     EHU00801.1 166 IGIGKGTVELDDFDHCDLVICIGHNPGTNHPRM-LATLQEVSKRGAKIVAINPLRERglerftapqnpvqmvtlsSTELASTYYKIRVGGDAAMLK 260
                    66666688999**********************.999****************9999988999999999999987666789999999999999966 PP

                    HHHHHHH...HCCCC.......TCHHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHH CS
  Molybdopterin 175 amghvil...qelkv.......dkeflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravi 260
                    + ++ ++   +e k        d +f++ +t g + ++  l++t       + + ++r ++e +++++++a + +i +G+g++++q g++++++++
     EHU00801.1 261 GVMKCLMamdEEAKTrgnpgvfDAAFIAEHTQGLDALKADLEATDWA-HILNVSGMSREQIEHIAQLYANAERTIICYGMGITQHQYGTQNVQQIA 355
                    65555441113343366666667788888888888888888888766.6778888999999999999999999*********************** PP

                    HHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT.HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTT CS
  Molybdopterin 261 nLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke.ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhad 355
                    nL+ll gn+g++g+g   l+G  +++g  + vg    + + +sl +  +  f    p + g+    ++v++ ++++++++++l  lg n   + +d
     EHU00801.1 356 NLLLLRGNMGKKGAGICPLRGHSNVQGD-RTVGIT--EVPSESLLKrIEAVFGFTPPTKHGH----SAVKAVQAIRDGEINALLCLGGNLAEAMSD 444
                    *********************8888884.444444..3444444442555566666666666....7777889*********************** PP

                    SCCCHCHHHCSSEEEEEE CS
  Molybdopterin 356 enevekalekldlvvvld 373
                     +++  a +kld+vv + 
     EHU00801.1 445 PQQTFAAMRKLDMVVHMA 462
                    **************9765 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.65   2.9e+03      38      82 ..     295     343 ..     294     361 .. 0.72
   2 !   34.7   0.0   3.1e-12   1.4e-08       1     111 []     614     724 ..     614     724 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.65
                      HHHHHT--TT-EEEEEETTE....EEEEEEEEESSB-TTEEEEESSHCC CS
  Molydop_binding  38 dAaalGikdGdlVevesrrG....svevrakvtervrpGvvfmpfgwwe 82 
                      dA + +++  d+ ++ +  G    ++e  a++  +  +  +   +g  +
       EHU00801.1 295 DALKADLEATDWAHILNVSGmsreQIEHIAQLYANAERTIICYGMGITQ 343
                      8999999999999999988876667777777777666666666666555 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 3.1e-12
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEE..TTEEEEEEE.....EEESSB-TTEEEEESSHCC.... CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVeves..rrGsvevra.....kvtervrpGvvfmpfgwweagek 86 
                      l+L+t rs+dq++++ +  ++++++  ++ + + i+++ A++ G++ Gd+V +    + G  + r         +++++G+v++++++      
       EHU00801.1 614 LVLTTLRSHDQYNTTLYGLDDRYRGVSGRrDILFISENEAEKKGVRMGDQVNIIAldPDGNPTHRRldnltIAVHDMAEGSVAAYYPE------ 701
                      79***************************************************96335564443333333355666**********99...... PP

                      .S-GHCTS.--SCSTTT--CSTT-EE CS
  Molydop_binding  87 ggnaNalt.ddatdplsgtpefksva 111
                         aN+l+  d+ d  sg+p++ks++
       EHU00801.1 702 ---ANVLIpLDSYDTKSGIPSYKSTP 724
                      ...8*******************985 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0011       4.9      74     112 ..     177     218 ..     155     233 .. 0.75
   2 ?    5.4   0.0    0.0031        14       1      35 [.     320     355 ..     320     366 .. 0.82
   3 ?   -3.3   0.0       1.5   6.9e+03      69      89 ..     446     466 ..     426     473 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
                   HHHH-SEEEEES-S..SSTCCCTTTTTTTTTT-.EEEEEESS CS
  TPP_enzyme_M  74 aleeaDlvlalGar..fddirttgsepefapea.kiihidid 112
                    ++++Dlv+++G +   +  r  ++ +e+++++ ki+ i++ 
    EHU00801.1 177 DFDHCDLVICIGHNpgTNHPRMLATLQEVSKRGaKIVAINPL 218
                   5689********885555545555777888888899999875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0031
                   HHHHHHHHHH-SSEEEEE-CHHCHTT.GHHHHHHHH CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsg.aseelrela 35 
                   ie++a+l ++a+r +i  G g+ +++  ++ +++ a
    EHU00801.1 320 IEHIAQLYANAERTIICYGMGITQHQyGTQNVQQIA 355
                   789******************998752556666665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.5
                   HHHHHHHHH-SEEEEES-SSS CS
  TPP_enzyme_M  69 kaanealeeaDlvlalGarfd 89 
                   +++ +a+++ D v+   ++++
    EHU00801.1 446 QQTFAAMRKLDMVVHMATKLN 466
                   445567777777777777766 PP

>> CpcD  CpcD/allophycocyanin linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.6e-05     0.072      35      55 .]     197     217 ..     195     217 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.6e-05
        CpcD  35 rLsqemqrInrqGGkIvsItp 55 
                 r+ +++q++++ G+kIv I+p
  EHU00801.1 197 RMLATLQEVSKRGAKIVAINP 217
                 9******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 6007.52
//
Query:       EHU00802.1  [L=237]
Description: hypothetical protein CKS_2938 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-34  118.0  13.4    3.9e-34  117.6  13.1    1.4  1  MgtC      MgtC family
  ------ inclusion threshold ------
       0.11   13.1   0.0       0.32   11.6   0.0    1.8  2  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6  13.1   4.4e-38   3.9e-34       3     118 ..      12     130 ..      10     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 4.4e-38
        MgtC   3 lAlllGlliGleRelrekaaGlRTfaLvalgaalfvllslelae.....srvaaqvvsgigflgagvilkekegakvkglTTaaslwvtaaiGllvglg 96 
                 +Al+lG+liG eR+lr+++ GlRT+aLv+ ga+lfvl+++ +       +rvaa+vvsgigflg+gvi+  ++g +v+gl+Taa+lw+taa+G+l+ +g
  EHU00802.1  12 AALILGALIGSERQLRQRMTGLRTNALVSTGACLFVLMTQCVPGiatdaTRVAAYVVSGIGFLGGGVIM--RDGLNVRGLNTAATLWCTAAVGVLCSMG 108
                 69************************************66665589999********************..9999************************ PP

        MgtC  97 lyllavvatvlvllllallrel 118
                 l+l+a+++++++l++++llrel
  EHU00802.1 109 LLLEAAIGCMVILCANILLREL 130
                 ******************9997 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         2   1.8e+04      26      40 ..      78      92 ..      78      94 .. 0.74
   2 ?   11.6   0.0   3.6e-05      0.32       3      78 ..     147     224 ..     145     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
       ACT_4 26 viseekanivsvnak 40
                vi  ++ n++ +n+ 
  EHU00802.1 78 VIMRDGLNVRGLNTA 92
                577788888888875 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.6e-05
       ACT_4   3 esytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveV..kdvehLsrviakLraipgVisV 78 
                 + y+v++   a+d+  + + ++  + +++ +++s+++++ +    +e++ +v    + + +L++++ ++   +gV sV
  EHU00802.1 147 QHYKVQIVCLAQDEVQVRSLMLHSLGNSGLRLQSLHSEDLDPPHRMEVNAEVMGqpSMTGQLESLVSRISLEKGVSSV 224
                 57*************************************7555455555555323256899*********99999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2057.67
//
Query:       EHU00803.1  [L=177]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-23   81.1   0.1    6.9e-23   80.7   0.1    1.2  1  NLPC_P60  NlpC/P60 family
  ------ inclusion threshold ------
       0.12   12.9   1.0       0.12   12.9   1.0    1.8  2  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.1   7.7e-27   6.9e-23       2     105 .]      59     162 ..      58     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 7.7e-27
                 -BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHH.CCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETTEEEEEE.TTEEEEEETTSTTBH CS
    NLPC_P60   2 kpYrwGGkspsgfDCsglvryafaka.gielprssgeq.eaagkkkeiskselkrGDLvffktkkgisHvgiYlgngkmlhas.sekvsvsslsekywk 97 
                 +pY+wGG++ sg+DCsg+v  ++ +  ++ + r + ++  ++g +  ++ ++l++GDLvff+  +g  Hvg Y  +++++has s++v  ssl+++ywk
  EHU00803.1  59 TPYQWGGTQLSGVDCSGYVWRTLHDRfNLPMDRVTTADlLHMGVR--VTPEHLQPGDLVFFRI-GGGMHVGFYDTDNQFIHASaSKGVIRSSLNNPYWK 154
                 79*********************9999****99999884566666..****************.999******************************** PP

                 SCEEECCE CS
    NLPC_P60  98 krllgvrr 105
                 + + ++rr
  EHU00803.1 155 SVYYQARR 162
                 ***99986 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   1.4e-05      0.12       4      18 .]       5      21 ..       1      21 [. 0.77
   2 ?   -3.0   0.2       1.5   1.4e+04       6      12 ..      43      49 ..      42      49 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
      LPAM_1  4 i..llalgalllLsGCs 18
                +  +++ g++llLsGCs
  EHU00803.1  5 TsfFFLSGLMLLLSGCS 21
                36577779********9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
      LPAM_1  6 lalgall 12
                + ++a+l
  EHU00803.1 43 IPIVAAL 49
                5566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1278.83
//
Query:       EHU00804.1  [L=94]
Description: hypothetical protein CKS_2935 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 781.95
//
Query:       EHU00805.1  [L=248]
Description: short chain dehydrogenase/reductase family oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-55  188.0   0.1    2.1e-55  187.8   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.3e-53  180.1   0.1    3.8e-53  179.9   0.1    1.0  1  adh_short        short chain dehydrogenase
    7.4e-09   35.8   0.5      1e-08   35.3   0.5    1.2  1  KR               KR domain
  ------ inclusion threshold ------
      0.063   12.6   0.0       0.12   11.6   0.0    1.5  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
       0.09   13.5   0.2       0.22   12.3   0.1    1.6  1  Methyltransf_25  Methyltransferase domain
      0.099   12.5   0.0       0.15   11.9   0.0    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.1   7.1e-59   2.1e-55       1     218 [.      12     229 ..      12     244 .. 0.93

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 7.1e-59
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   GaasgIG+aiA ++a+eGa+++ltd++  + k+v +  ++ g   + + +DV + e  +a v+++ ++f+++Dilvnnag+ ++  +++++++   +
    EHU00805.1  12 GAASGIGAAIAMLFAREGAHLILTDRDSTKLKTVVDHCRQSGVPcFgIVADVGEVEGATAGVDACLAQFDGIDILVNNAGMLTQ--ARCTDITLPMW 106
                   9*****************************88888888888988569*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   +++++v+l+s+fl +++alp +++++ g+++n++s  + ++ ++ ++y+aaKa++ ++tr+l  e+ ++++ vNa++pgp++T++ +gi+  ++ + 
    EHU00805.1 107 EEMMAVDLRSVFLATQRALPsMLAQRwGRVINIASQLGIKGGAELSHYAAAKAGVLGFTRSLGLEVSADNVLVNAIAPGPVETPLIDGIN--QAWKT 201
                   ********************7444446**************************************************************9..78888 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasde 218
                   + +a+ plgr+g++eeva +al Las+ 
    EHU00805.1 202 AKAAELPLGRFGRAEEVAPVALLLASEP 229
                   88999*********************74 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   0.1   1.3e-56   3.8e-53       3     191 ..       8     196 ..       6     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 1.3e-56
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                  ++ Ga+sGIG aia  +a+eGa+++++dr + kl++v++++++ g   + i +Dv + e + a v+++ ++++++d+LvnNAG+  ++   +++   w
  EHU00805.1   8 CVISGAASGIGAAIAMLFAREGAHLILTDRDSTKLKTVVDHCRQSGVPCFGIVADVGEVEGATAGVDACLAQFDGIDILVNNAGMLTQARCTDITLPMW 106
                 6899*********************************************************************************************** PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 e++++v l +vfl+t+ +lp ml+q++Gr++n++S+ g ++ a+++ Y+A+Ka+v g+trsl  e++ +++ vna+aPG+v+T++   ++
  EHU00805.1 107 EEMMAVDLRSVFLATQRALPSMLAQRWGRVINIASQLGIKGGAELSHYAAAKAGVLGFTRSLGLEVSADNVLVNAIAPGPVETPLIDGIN 196
                 ***********************************************************************************9977666 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.5   3.4e-12     1e-08       4     154 ..       9     159 ..       7     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.4e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 +i G++ g+G ++a   a++ga hl+l+ R+   + + k+ +++++++g+ +  + aDv + +  +a ++++ a+++ i   ++ Ag+l ++  ++ t 
  EHU00805.1   9 VISGAASGIGAAIAMLFAREGA-HLILTDRD---STKLKTVVDHCRQSGVPCFGIVADVGEVEGATAGVDACLAQFDGIDILVNNAGMLTQARCTDITL 103
                 79************99999997.8*******...4455669********************************************************** PP

                 HHHHHHHTTTTHHHHHHHH.HTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhe.lled...esldffvlfSSiagllgsagqanYaaaNa 154
                  ++e+++a  ++ +    + +l++   ++   ++ ++S  g+ g a+ ++Yaaa a
  EHU00805.1 104 PMWEEMMAVDLRSVFLATQrALPSmlaQRWGRVINIASQLGIKGGAELSHYAAAKA 159
                 *********998875544314443555788999********************976 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.12      33      78 ..       2      47 ..       1      67 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
                   --TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHC CS
  THF_DHG_CYH_C 33 elegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitr 78
                   +l+ k++v+ G+ + +g ++a+l+++++a   ++++ +++l++++ 
     EHU00805.1  2 QLRMKRCVISGAASGIGAAIAMLFAREGAHLILTDRDSTKLKTVVD 47
                   577899******************************9988876554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.3e-05      0.22       5      77 ..      14      86 ..      11      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
                     T-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GGGS CS
  Methyltransf_25  5 GcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lhhl 77
                     + G G  +++l +r g a+++ +D +++ l+++  +++++g+ +  +++d+ +++ + + +D++++++  + +l
       EHU00805.1 14 ASGIGAAIAMLFAREG-AHLILTDRDSTKLKTVVDHCRQSGVPCFGIVADVGEVEGATAGVDACLAQFDgIDIL 86
                     5677776655554435.************************************************988877764 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.2e-05      0.15      10      44 ..      17      51 ..       9      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.2e-05
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekiek 44
                +Ga ia++fa++g +  l+d+++ +l+++ +++++
  EHU00805.1 17 IGAAIAMLFAREGAHLILTDRDSTKLKTVVDHCRQ 51
                8**************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2147.23
//
Query:       EHU00806.1  [L=257]
Description: short-chain dehydrogenase/reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-66  224.2   1.5    1.8e-66  224.1   1.5    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    1.7e-44  151.6   0.1    2.2e-44  151.3   0.1    1.1  1  adh_short       short chain dehydrogenase
    2.5e-16   60.1   1.2    3.6e-16   59.6   1.2    1.1  1  KR              KR domain
      0.005   16.5   0.1     0.0093   15.6   0.1    1.4  1  LRR_RI_capping  Capping Ribonuclease inhibitor Leucine Rich R


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   1.5     4e-70   1.8e-66       1     234 []      14     252 ..      14     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 4e-70
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH...HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea...kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   GaasgIG a+A ++a++G +v++ ++ ++    + +++++++++g ++ l+++V ++++v+a++++ v++fg+lD +v nagi ++  ++++e+s++
    EHU00806.1  14 GAASGIGLALATLYAQRGVRVIAGYYPQDPhdpAVAAAQIEAAGGDALwLPLNVGSTDSVDAFIAQGVQHFGRLDAVVANAGILRR--AEIEEMSDA 108
                   9***********************9998886333444555555566646*************************************..********* PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT..HHH CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeggsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg..fde 187
                    +d++l+v+l+++++l +aa+ ++++g+s+v++ss+++ ++ ++ +++y+aaKaa+ +++r+lAvel+p+g+R+Na+ pg+i+T+ + + ++   +e
    EHU00806.1 109 RWDEMLNVDLTGVMRLFRAAAAHLQSGASLVAVSSIAGGVYgWQAHAHYAAAKAAVPGICRSLAVELAPRGVRCNAIIPGLIETPQSLDKDNslGPE 205
                   ************************************88877366677**************************************955544445899 PP

                   HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 188 lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                    l+++++ +plgr+g++eeva++++fL sde+sy tGq l+vDgGlt
    EHU00806.1 206 GLAKAAKAIPLGRVGRAEEVAKVIAFLTSDESSYLTGQSLIVDGGLT 252
                   *********************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.1   4.8e-48   2.2e-44       2     186 ..       9     194 ..       8     201 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 4.8e-48
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 v+ + Ga+sGIG+a+a  +a++G++v++  + + + + + +a++++++g +al ++++v + ++v+a++++ v+++g+ld++v+NAGi ++++++e+s+
  EHU00806.1   9 VAAISGAASGIGLALATLYAQRGVRVIAgyYPQDPHDPAVAAAQIEAAGGDALWLPLNVGSTDSVDAFIAQGVQHFGRLDAVVANAGILRRAEIEEMSD 107
                 7899************************8667778888999999**99*************************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdm 186
                 ++w+++++v ltgv+ l ra++ ++  qs+++ v vsS+ag  +++   a Y+A+Kaav g+ rsla elap+g+r+na+ PGl++T+ 
  EHU00806.1 108 ARWDEMLNVDLTGVMRLFRAAAAHL--QSGASLVAVSSIAGgVYGWQAHAHYAAAKAAVPGICRSLAVELAPRGVRCNAIIPGLIETPQ 194
                 ************************5..69***********98999*****************************************985 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   1.2     8e-20   3.6e-16       4     161 ..      11     169 ..       9     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 8e-20
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                  i G++ g+Gl+la+  a++g r ++    + +  +d +   a++ea g +  ++++ v + d+v a +++  ++++++  v+  Ag+lr + +eem++
  EHU00806.1  11 AISGAASGIGLALATLYAQRGVRVIAGYYPQDP--HDPAVAAAQIEAAGGDALWLPLNVGSTDSVDAFIAQGVQHFGRLDAVVANAGILRRAEIEEMSD 107
                 599********************9998888844..44455699******************************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHH.HH--TT-HHHHHHHHHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled..esldffvlfSSiag.llgsagqanYaaaNaflDalae 161
                 ++++++l+  ++G+  L ++ +   +s   +v +SSiag ++g + +a+Yaaa a + ++++
  EHU00806.1 108 ARWDEMLNVDLTGVMRLFRAAAAhlQSGASLVAVSSIAGgVYGWQAHAHYAAAKAAVPGICR 169
                 ******************99998889999********988*************998877666 PP

>> LRR_RI_capping  Capping Ribonuclease inhibitor Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.1e-06    0.0093       8      19 ..     103     114 ..     101     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-06
  LRR_RI_capping   8 EeLSdsRWtELL 19 
                     Ee+Sd+RW E+L
      EHU00806.1 103 EEMSDARWDEML 114
                     9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1905.29
//
Query:       EHU00807.1  [L=456]
Description: putative sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-35  120.7  57.0    6.1e-30  104.3  27.4    2.0  2  MFS_1     Major Facilitator Superfamily
      3e-22   79.1  20.3    3.9e-22   78.8  20.3    1.1  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3  27.4   6.8e-34   6.1e-30       2     320 ..      30     366 ..      25     371 .. 0.80
   2 !   30.3  21.6   2.2e-11     2e-07      52     174 ..     315     440 ..     310     453 .. 0.76

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 6.8e-34
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwl...llvlrvlqGl 97 
                 ++a +++ +++ ++g++lp  ++ ++g+s+ e++ ++t +a+g av +l +G+l+dr+Grr  +++++ + al++ll ++  +lw    l + r ++Gl
  EHU00807.1  30 FFAWIFAVYDFILFGTLLP-EIGGHFGWSEVEQSEIATWVAFGEAVIALAIGPLVDRLGRRMGIVITVGGAALCSLLTAI-GGLWGkgaLTAIRSVAGL 126
                 6677788888888999999.9*****************************************************666665.55553355********** PP

       MFS_1  98 gagalfpagaaliadwfpk.e......ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee. 188
                 g+ a  ++ a++++++++  +      ++g++++l+++g+ +Ga+++ +l ++l+  +gW+++f+++a+ sl+ ++l  +l + e p+ + +++++ + 
  EHU00807.1 127 GY-AEQTVNATYLSELYTAlDdpklnkRKGFVYSLVQGGWPVGALVASALTAILLPIIGWQGSFIFAAFRSLVIALL--ALKLKETPQFEVQKKIKTLr 222
                 *9.777777777777776635899999***********************************************997..44433333333333333334 PP

       MFS_1 189 ...................kgtgpaplvp.awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrl 267
                                    + + ++++++   +  l++    +l +a+ll++f+++++++l ++ + +++  s +  ++l+l l+ lvg ++ l  g+l
  EHU00807.1 223 eqgkekdarqvaadyqvpyEDQPKSGFASaFRGTALRSTL--VLGVAILLNWFAIQIFSVLGTTVITKTHAVS-FNNSLLILILSNLVGYCGYLAHGWL 318
                 5677677777777676666555555555532223333332..58999999999********************.9999999****************** PP

       MFS_1 268 sdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfps 320
                  dr+grr+++  +  l+ +a++++++++       ++++++l+++gl+f  ++
  EHU00807.1 319 GDRIGRRNTIAAGWMLGGIAFAAMLFCPDN-----FAIIVALYSVGLFFLIGP 366
                 ****************************99.....444445555555554444 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 2.2e-11
       MFS_1  52 lGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailg.pllggllassl 148
                  G+l+dr+Grr ++ +g  l +++++++lf++  + ++++l  +  ++  + ++a++ +i++ fp   r+ a +l++a+  +Gai++  +  ++l++ +
  EHU00807.1 315 HGWLGDRIGRRNTIAAGWMLGGIAFAAMLFCPDNFaIIVALYSVGLFFLIGPYAAALFFISESFPTAIRATAGALIMAMGPVGAIVAgVGTTSVLSQGG 413
                 4***********************66666886667477777777777779999*******************************777255555666555 PP

       MFS_1 149 gWrav.fyilaivsllafvlfllllpe 174
                  W+ +  ++ a+ ++++++++l+  p+
  EHU00807.1 414 HWQEAaLLFGAVPCFVSGIIILFARPV 440
                 588772555666777888864454444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8  20.3   4.3e-26   3.9e-22      44     445 ..      57     446 ..       8     451 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 4.3e-26
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS......-SCCH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA......pkklR 136
                 s+v ++ i+  + +G+++ +l +g+l+dr+GR+ +++i++  +  +++l+a+    +   +l++ R ++G+g   ++++  +y+sE+       + ++R
  EHU00807.1  57 SEVEQSEIATWVAFGEAVIALAIGPLVDRLGRRMGIVITVGGAALCSLLTAIGG-LWGKGALTAIRSVAGLGYA-EQTVNATYLSELYtalddpKLNKR 153
                 667778899999************************************999888.99***************95.566677899997656888666888 PP

                 .HHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH CS
    Sugar_tr 137 .galvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleae 234
                  g++ sl q ++ +G lva+ ++++l  + +   w+  + ++++ +l++++l l l E+P + v+k+      ++l++  +e+da + +a+++  +e +
  EHU00807.1 154 kGFVYSLVQGGWPVGALVASALTAILLPIIG---WQGSFIFAAFRSLVIALLALKLKETPQFEVQKK-----IKTLREQGKEKDARQVAADYQVPYEDQ 244
                 89***************************99...*********************************.....778888777779999999999999999 PP

                 HH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHH CS
    Sugar_tr 235 qeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaic 330
                  ++      + ++      r +++++++i+ +   i ++  +++t++ +++       ll+ i+   v     ++  +l dr+GRR++   G + + i+
  EHU00807.1 245 PKSG---FASAFRG--TALRSTLVLGVAILLNWFAIQIFSVLGTTVITKTHAVSFnnsLLILILSNLVGYCGYLAHGWLGDRIGRRNTIAAGWMLGGIA 338
                 5443...4444444..24577777788889999999********998877654442337777777777777777778*********9999988777777 PP

                 HHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH..T-HHHHHHHHHHH CS
    Sugar_tr 331 fvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig..ggyvflvfaglav 427
                 f+ +    l+++++     +++iv+++ +  +f +g+     + +sE fp+++R++a a+ +a+  +  ++ ++ ++ ++++ g  +    l+ a+ + 
  EHU00807.1 339 FAAM----LFCPDN-----FAIIVALYSVGLFFLIGPYAAALFFISESFPTAIRATAGALIMAMGPVGAIVAGVGTTSVLSQGGhwQEAALLFGAVPCF 428
                 6666....799999.....799*******************************************************9999999544445556666677 PP

                 HHHHHHHHHS--STT--C CS
    Sugar_tr 428 lfiifvfffvpetkgrtl 445
                 ++ i+++f  p t   t+
  EHU00807.1 429 VSGIIILFARPVTQLNTH 446
                 778888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3367.18
//
Query:       EHU00808.1  [L=216]
Description: hypothetical protein CKS_2929 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1611.08
//
Query:       EHU00809.1  [L=129]
Description: hypothetical protein CKS_2928 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-21   76.6   0.0    1.8e-21   76.4   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0     1e-25   1.8e-21       9     120 ..      17     126 ..      11     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1e-25
                    SS-BSEEEETTEEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE CS
  Ribonuc_L-PSP   9 apYsqavkagnlvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsave 103
                    ++Ys++    +++++sG lp +p  ge+   + +++q+ q+++ l+ +L++ +++ s+ V+v+v+ladi+ + ++n+ ya+++   k  Par++v 
     EHU00809.1  17 GHYSHYCLGAGMMFISGLLPATP-AGEMLsAAPFADQVLQVFASLDTCLRQENLTRSQLVMVRVYLADIALWDDFNALYAQWLGSWK--PARAVVP 109
                    89****999*************9.55555599******************************************************8..******* PP

                    -SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 104 VaaLpkgakvEIeaiav 120
                    V+ L  g+++EIea+av
     EHU00809.1 110 VSGLHYGVLLEIEATAV 126
                    ***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1113.11
//
Query:       EHU00810.1  [L=443]
Description: FAD dependent oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-63  214.6   2.0    3.7e-63  214.2   2.0    1.1  1  DAO            FAD dependent oxidoreductase
    5.4e-07   29.0   2.7    4.3e-06   26.1   4.2    1.7  2  FAD_binding_2  FAD binding domain
      2e-06   27.9   0.0    5.1e-06   26.6   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0008   18.6   0.1      0.017   14.2   0.1    2.2  2  GIDA           Glucose inhibited division protein A
     0.0036   16.6   0.1      0.028   13.7   0.1    2.0  2  Thi4           Thi4 family
     0.0043   16.3   0.0      0.013   14.7   0.0    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0081   15.4   0.5      0.038   13.3   0.2    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.012   14.8   0.5      0.022   14.0   0.5    1.4  1  FAD_binding_3  FAD binding domain
      0.066   12.5   0.1       0.15   11.4   0.0    1.5  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.068   12.8   0.1       0.11   12.2   0.1    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
       0.14   10.9   2.3       0.24   10.0   1.1    1.8  2  HI0933_like    HI0933-like protein
       0.26    9.8   0.0       0.34    9.4   0.0    1.1  1  Mqo            Malate:quinone oxidoreductase (Mqo)


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   2.0   2.5e-66   3.7e-63       1     352 []      19     413 ..      19     413 .. 0.88

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 2.5e-66
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 dvviiG+Gi+G++t ++L+++g  V++lekg  +g ++S+rn+g++++  r+ +   e+ +l l+al++++el++e g+d+++r tGl++ + +e++  
  EHU00810.1  19 DVVIIGAGIVGAATCWALTQKGyrVAVLEKG-LVGAEQSSRNWGWCRQLNRDER---EI-PLILHALQRWHELSKEIGMDVGFRATGLVYATCTEKDIR 112
                 9******************************.9999************888555...45.*******************************88999999 PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEE CS
         DAO  98 aldkllallleagldaelldaeevrelepalp.gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaad 194
                 ++d++ ++++++g+++++l+a+e++++ p+++  ++g++++pd+g +dpa ++++l++aa ++G+ +++++ v+gl+   g+v+gv   t+ g +++  
  EHU00810.1 113 NWDNWGKMAKQYGIRSQILNAAEAKAMTPGSRtAWKGGVHSPDDGYADPALAAPGLMEAAVKKGAFLFQRCAVRGLDISAGQVSGV--ITErGLIKT-S 208
                 9*999999999******************94459******************************************9988******..666698533.6 PP

                 EEEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE..................... CS
         DAO 195 avVnaaGawsdll.gll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad..................... 270
                  vV aaGaw++l+ +++    dlp   v g+ +++ p+++  v          +    + + ++pr dg+  +  +++                     
  EHU00810.1 209 RVVCAAGAWTSLFcRRHgI--DLPAGNVIGSAFRTYPVEQ--VIT--------RPFYTDAFACRPRSDGGYTIALSGTgrlepgiqglkyarqffplyk 295
                 6**********88777744..56*9**********77655..222........33445567789998887665444444499999999*********** PP

                 .................................EETTCSSTSCSHHHHHHHHHHHHHHSGGG..CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEE CS
         DAO 271 .................................eesgdddpevdeedidellealrklfPql..gdvlrkwaGlrp.lpdglpligetpgvkglylatG 333
                                                  e  +  dp+v++  +++ l a+ + +P+l   +v+++w G+ + +pd+  +i  +p+ +gl+l +G
  EHU00810.1 296 arrlnletkirltsflqgpeslarwsmerpspfEKIRILDPTVSDGVVEKGLMAIGREYPALagLRVTQAWGGVIDcMPDDISVISTVPQLPGLVLSAG 394
                 *************************9998776655555569********************95566889*******56**********9********** PP

                 CTTTHHHHHHHHHHHHHHH CS
         DAO 334 hsghGltlapatGkllael 352
                 +sghG+  +p++G+l+a+l
  EHU00810.1 395 YSGHGFGIGPGAGRLTADL 413
                 *****************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   4.2   2.9e-09   4.3e-06       1     208 [.      19     222 ..      19     240 .. 0.81
   2 ?   -2.9   0.0       1.8   2.7e+03     137     171 ..     270     303 ..     258     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.9e-09
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaapeavde 95 
                    Dv++iG+G+ G a   +++++G +vav+ek+ +   ++    G+   +++ e +   i     + ++++ k+ + +   ++   ++++  ++ ++ 
     EHU00810.1  19 DVVIIGAGIVGAATCWALTQKGYRVAVLEKGLVGAEQSSRNWGWCRQLNRDEREIPLI-LHALQRWHELSKEIGMDVgFRATGLVYATCTEKDIRN 113
                    9*******************************95557777788888888655544444.557777777788888888899999999**9******* PP

                    HHHTT----BCCTS....SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHH.HTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTC CS
  FAD_binding_2  96 Leelgvpfsrtedg....pvdvrelGglsatartlhdaadarretlvtghallarlvesa.rkagvdfqerteadeLivedgrvtGavvenpesgr 186
                      ++g + ++   g     ++++e  ++++ +rt+++ +++  +     +al+a+++ +a  k g  ++ r++++ L +  g+v+G++ e      
     EHU00810.1 114 WDNWGKMAKQ--YGirsqILNAAEAKAMTPGSRTAWKGGVHSPDDGYADPALAAPGLMEAaVKKGAFLFQRCAVRGLDISAGQVSGVITE------ 201
                    ****777777..2344459*********************97799999999999976555166669999*****************9988...... PP

                    EEEEEESEEEE-----GG.... CS
  FAD_binding_2 187 evrirakavvlatgGfgrallk 208
                    +  i+  +vv+a+g++   l++
     EHU00810.1 202 RGLIKTSRVVCAAGAWTS-LFC 222
                    33466779*****99995.443 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                    ..HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECT CS
  FAD_binding_2 137 lvtghallarlvesarkagvdfqerteadeLived 171
                      +g + l+++++++ k++ +f++ ++a++L+ e+
     EHU00810.1 270 ALSGTGRLEPGIQGL-KYARQFFPLYKARRLNLET 303
                    567888899999999.8999*********999876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.4e-09   5.1e-06       1      28 [.      22      49 ..      22      81 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.4e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   I+GaG+ G++++++L+++g++v +lek+
     EHU00810.1 22 IIGAGIVGAATCWALTQKGYRVAVLEKG 49
                   9*************************97 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-05     0.017       1      29 [.      19      54 ..      19     142 .. 0.73
   2 ?    2.2   0.0     0.051        76     118     152 ..     185     218 ..     177     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.......E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.......t 29
                dv++iG+G  G + ++a+ ++G++v+ +        
  EHU00810.1 19 DVVIIGAGIVGAATCWALTQKGYRVAVLekglvgaE 54
                79***********************99855555551 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.051
                 EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-B CS
        GIDA 118 veeliveekkvkgvvtedgetikakavviatGtfl 152
                 v  l+++ ++v+gv+te+g  ik++ vv a+G++ 
  EHU00810.1 185 VRGLDISAGQVSGVITERGL-IKTSRVVCAAGAWT 218
                 67788888********9995.78999******954 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.9e-05     0.028      18      51 ..      18      50 ..       6      54 .. 0.87
   2 ?    0.0   0.0      0.28   4.2e+02      94     145 ..     159     208 ..     152     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersv 51
                 Dvvi+GaG  G ++   l++k + +va+le+ +
  EHU00810.1 18 VDVVIIGAGIVGAATCWALTQK-GYRVAVLEKGL 50
                6*********************.********865 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.28
                 SEHHHHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTC CS
        Thi4  94 kdaalftstllskvlqlanvkllnavaveDlivregegvaGvvinwtlvela 145
                 +d al+   l+ ++++  ++ l++  av  l +    +v+Gv+++  l++++
  EHU00810.1 159 ADPALAAPGLMEAAVK-KGAFLFQRCAVRGLDISA-GQVSGVITERGLIKTS 208
                 5677788888999998.8999********999998.79******99998876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.9e-06     0.013       2      30 ..      19      47 ..      12      94 .. 0.84
   2 ?   -1.5   0.0      0.75   1.1e+03      96     114 ..     203     221 ..     132     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.9e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve 30
                 dvv+iG+G+ G a+   l q+g++v+++e
   EHU00810.1 19 DVVIIGAGIVGAATCWALTQKGYRVAVLE 47
                 78888888888888888888888888885 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.75
                  EEEEESEEEE---EEE-BC CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdl 114
                    i+  ++v A G+++ ++
   EHU00810.1 203 GLIKTSRVVCAAGAWTSLF 221
                  3467777777777776665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   2.5e-05     0.038       1      34 [.      21      53 ..      21      66 .. 0.85
   2 ?   -0.4   0.0      0.37   5.5e+02     114     135 ..     196     217 ..     181     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnign 34
                 +IiGaG  G a+  +l ++g  ++ +lEkg +g+
   EHU00810.1 21 VIIGAGIVGAATCWALTQKGY-RVAVLEKGLVGA 53
                 7********************.8*******8774 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.37
  Pyr_redox_3 114 fevetsketyeAkkviiAtGef 135
                    v t+++ +++++v+ A+G +
   EHU00810.1 196 SGVITERGLIKTSRVVCAAGAW 217
                  5699****************86 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   1.5e-05     0.022       2      32 ..      18      48 ..      17      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dV+I+GaG +G+ +   L+++G rv ++ek
     EHU00810.1 18 VDVVIIGAGIVGAATCWALTQKGYRVAVLEK 48
                   79****************************9 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.9e-05      0.15      30      66 ..      19      55 ..      13      75 .. 0.86
   2 ?   -3.3   0.0       2.9   4.4e+03       1      27 [.     172     199 ..     172     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.9e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleq 66
                  v++iG+G++G +  ++ ++ g +V vl++    +eq
   EHU00810.1 19 DVVIIGAGIVGAATCWALTQKGYRVAVLEKGLVGAEQ 55
                 69*************************9987766666 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
                  HHHHHHHHCSCG.CTSEEETTCEETCB- CS
  AlaDh_PNT_C   1 Avleaakalekf.fggkgtlaGgvpgve 27 
                  Av  +a+ +++    g  + aG+v+gv 
   EHU00810.1 172 AVKKGAFLFQRCaVRGLDISAGQVSGVI 199
                  6778888888862578999999999985 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     7e-05      0.11       1      30 [.      20      49 ..      20      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrs 30
                ++i+GaG +G   ++ L+++g+ v ++ ++
  EHU00810.1 20 VVIIGAGIVGAATCWALTQKGYRVAVLEKG 49
                68*********************9988765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1   0.00016      0.24       2      32 ..      19      49 ..      18      54 .. 0.94
   2 ?   -0.9   0.0      0.35   5.2e+02     116     164 ..     169     216 ..     164     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv++iG+G  G  ++ ++ ++g rV++lek+
   EHU00810.1 19 DVVIIGAGIVGAATCWALTQKGYRVAVLEKG 49
                 8****************************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
                  HHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 116 lkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  ++++ ++g  l  +++v++++ +++++  v t +++ ++++++v A G 
   EHU00810.1 169 MEAAVKKGAFLFQRCAVRGLDISAGQVSGVIT-ERGLIKTSRVVCAAGA 216
                  566677888899999*******99**999999.99***********996 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00022      0.34       2      47 ..      17      60 ..      16      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00022
         Mqo  2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeessnaw 47
                +vdvv+iGaGi+ a+    l+  +  ++++vle+    ae+ss++w
  EHU00810.1 17 SVDVVIIGAGIVGAATCWALT--QKGYRVAVLEKGLVGAEQSSRNW 60
                68***********98887776..5789999****999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3159.87
//
Query:       EHU00811.1  [L=376]
Description: metal-activated pyridoxal enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-31  107.5   0.4    1.1e-30  106.9   0.4    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    3.2e-20   72.6   0.0    8.7e-20   71.2   0.0    1.8  1  D-ser_dehydrat  Putative serine dehydratase domain
    0.00043   19.8   0.0    0.00087   18.8   0.0    1.5  1  AP_endonuc_2    Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.4   1.8e-34   1.1e-30       2     214 ..      15     237 ..      14     241 .. 0.90

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.8e-34
                     EHHHHHHHHHHHHHHS.CTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESCSTGGGHHHHHH.....TTE CS
  Ala_racemase_N   2 dldalrhNlrrlrala.gpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvlegfspeelaalae.....ydl 90 
                     d  ++r+N+rrl +++ + ++++++++K+    +  v+ a+ l++  a+  +v+tl+Ea++ ++ag+++ il+  g++p++l+++a+     + +
      EHU00811.1  15 DKVKFRRNIRRLYDHIdSLHCQIRPHLKT----LRTVQSAPWLLRDRASPATVSTLAEAEAFAAAGYRN-ILYAVGIAPDKLPRIAAclrlgAYV 104
                     56689***********555999*******....88999999999899*******************666.9999999*******9999999879* PP

                     EEEESSHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSC.HHHHHHHHHHHHTTTEEEEEEE-S-SST......TSTSHHHHHHHHHHHHHHH CS
  Ala_racemase_N  91 tvtvdsleqlealaaaareagkplrvhlkidtgmgRlGftp.eeleellealaalpglrleglmtHfasa......depdeeteaqlarfeeale 178
                     ++++dsl q++a++a+ ++++  + v+++id++++R+G++p + + + + a  +++g+++eg++tH + +      de +++++a+ ++  +a++
      EHU00811.1 105 HLLLDSLTQAQAISAYGQQHQVAFSVFIEIDCDGHRGGIKPdDSALTDIGAYLQQNGMHVEGVLTHAGESyhcrtqDEIAQAARAECQAAIKAAK 199
                     *****************************************8666555555555678***************9988777778888********** PP

                     HHHHTTGGGSEEEEESHHHHHHSG.GG.TTEEEESGGG CS
  Ala_racemase_N 179 elekaglrppvvslanSaaillaa.ah.fdmvRpGial 214
                     +l++ag+ +pvvs+++++++ +      +++vR+G++ 
      EHU00811.1 200 RLRAAGVTCPVVSVGSTPTAHAVRdLDgVTEVRAGVFS 237
                     ***999*****************53446*******975 PP

>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.5e-23   8.7e-20       1      95 [.     255     359 ..     255     360 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.5e-23
                     -EEEEEEEEEEETTTT.EEES--HHHH-S-.....S.S--BT-EEE-TTSEEEEB-..EE-SS-EEEE--TT-...GGGS-TT-EEEEE-S-HHH CS
  D-ser_dehydrat   1 AlavlatVvSrptarr.alvdaGskalsld.....s.sgpgfgkvvagleegwvvsvrrlsdEhgiltleees...addlrvGdvvrlipnHaCp 85 
                     Al+v++tV++++ +++ + vdaG++a+s+d     +    g+g v++++ +++ + +++ ++Ehgi++ + +s    +d+ +G+++r++pnHaC+
      EHU00811.1 255 ALSVVTTVIGQNAEKGwLFVDAGWMAMSRDrgtasQkTDYGYGLVCDSEGRSTGLLLSSTNQEHGIIAIPPDSghqVTDFSLGTRLRILPNHACA 349
                     89*************99*************9999855778899999888866666667***********966699999***************** PP

                     HHTT-SEEEE CS
  D-ser_dehydrat  86 tvnlhdayvv 95 
                     t+ +h +y v
      EHU00811.1 350 TAGMHTRYQV 359
                     *******987 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-07   0.00087      12     100 ..     132     219 ..     130     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-07
                   EEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS..HHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTS CS
  AP_endonuc_2  12 vElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear..reesvdalkraielaaaLGapllvlhpGtagagpkg 100
                   +E+ +++++     +d++l ++ + l+++g+++ ++ ++++ +y        +   ++++++ + ai++a++L a  +++++ + g+ p  
    EHU00811.1 132 IEIDCDGHRGGIKPDDSALTDIGAYLQQNGMHVEGVLTHAGESYHCRT---QDeiAQAARAECQAAIKAAKRLRAAGVTCPVVSVGSTPTA 219
                   89999999999988******************************6653...23578999**************988888887743344433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2948.60
//
Query:       EHU00812.1  [L=304]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-34  117.9   0.1    5.3e-34  117.4   0.1    1.2  1  LysR_substrate  LysR substrate binding domain
    1.8e-11   43.8   0.0    2.9e-11   43.1   0.0    1.3  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00099   18.9   0.0     0.0019   18.0   0.0    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.072   13.0   0.1       0.21   11.5   0.1    1.8  1  MarR_2          MarR family
       0.12   12.1   0.0       0.35   10.7   0.0    1.7  2  HTH_8           Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.1   1.5e-37   5.3e-34       2     206 ..      88     292 ..      87     295 .. 0.91

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.5e-37
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     ++ +g+Lr+ ap  +++  ++pll+++  ++P+++++l  +d  +   + a+   D+ai  g+++ds+l ++++a +++vl+aspd+ L r g p
      EHU00812.1  88 NRISGTLRVLAPLGFGSEYIAPLLSDYVDQHPDLSVDLMLSD--NPNWMQADK-WDVAIYIGNLRDSSLYSTRIAPNRRVLCASPDY-LQRhGVP 178
                     5789**************************************..666555666.*********************************.***9*** PP

                     ECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                     +++++L ++ +++ +e++   +r+ + +  +   +k++++l +n+   +++++++G Gi + + + ++ e+++grlv   lpe+ lp +++++++
      EHU00812.1 179 THPAELTQHHCLVIRENAEdvTRWVFAHQHDPVTVKITPRLASNDGRVIKRWALQGKGIMVRSIWDISSEIKQGRLV-PLLPEFMLPpADIAALT 272
                     ***************99999*********************************************************.99999966669998887 PP

                     E.TTCCCHHHHHHHHHHHHH CS
  LysR_substrate 188 r.kgrelspavrafidflre 206
                       ++  + p+++ fi +l++
      EHU00812.1 273 SmPEIKRLPRTQGFITLLKT 292
                     62444577788888887776 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   8.2e-15   2.9e-11       2      60 .]       5      63 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 8.2e-15
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++lr f+ +  + ++++AA+ L +++p+v+++++  E+ +g +L+ R  +++ LT++Ge
  EHU00812.1  5 DDLRFFQVISASATLAAAARYLDITPPSVTQRLQHIEQKMGIKLILRPAKRIILTDEGE 63
                589********************************************999********7 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.3e-07    0.0019      11      44 ..      15      48 ..      11      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.3e-07
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldl 44
                ++  ++a+A+ L + + ++++RL++ie+ +g+ l
  EHU00812.1 15 ASATLAAAARYLDITPPSVTQRLQHIEQKMGIKL 48
                567799************************9986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     6e-05      0.21      22      47 ..      17      42 ..       7      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
                EEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLva 47
                 t ++ ar+l++++++v+++l+  ++
  EHU00812.1 17 ATLAAAARYLDITPPSVTQRLQHIEQ 42
                488999***************98876 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.8e-05      0.35      21      40 ..      19      38 ..      12      39 .. 0.91
   2 ?   -3.0   0.0       1.8   6.5e+03       9      22 ..      78      91 ..      75      91 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.8e-05
                HHHHHHHHTS-HHHHHHHHH CS
       HTH_8 21 kskAArlLGisRrtLyrKLk 40
                +++AAr+L+i++ +++ +L+
  EHU00812.1 19 LAAAARYLDITPPSVTQRLQ 38
                689***************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
                HHHHHHHHTTT-HH CS
       HTH_8  9 lIeaALertgGnks 22
                 +++++++t++++s
  EHU00812.1 78 QLQDVIDQTRNRIS 91
                68999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2450.07
//
Query:       EHU00813.1  [L=187]
Description: fasciclin-like repeat-containing secreted/surface protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-32  110.8   0.2    6.8e-32  110.4   0.2    1.1  1  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.2   3.8e-36   6.8e-32       2     128 .]      51     186 ..      50     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 3.8e-36
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHT..CHHHHHHHHHTTEEESSS-HHHHHHH......HEEEECCTTSSEEEEEE CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellaklln..dkkklkeiLkyHvvpetvsssalkka......setlatllegaklrvni 92 
                 d +t+v+++++agl+++L+ ++g++TvFaPtn+Afaklp+++ ++ll+  +k++l+++L+yHvv++++ ++al+++        +l+t ++g++l++ +
  EHU00813.1  51 DHTTLVAAVKAAGLVDTLQ-GKGPFTVFAPTNAAFAKLPAGTVDNLLKpeNKAQLTSVLTYHVVAGKYDMKALENKikqgggHAELKT-VNGQPLWIMN 147
                 689***************5.55******************************************************888888888***.********** PP

                 EGGTTEEEETT....EEEEEEEEEEESSEEEEEESS-TSX CS
   Fasciclin  93 ekgngtvtvng....karvvrsdieatngvihvidkvLlp 128
                 + g +++ +++     a++ + d++++ngvi vid+vL+p
  EHU00813.1 148 N-GPHNIQLKDaqgnVANISTYDVNQKNGVIDVIDTVLMP 186
                 *.55567777777888**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1591.92
//
Query:       EHU00814.1  [L=184]
Description: putative RNA polymerase sigma factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-15   55.3   0.5    1.1e-14   53.9   0.3    1.8  2  Sigma70_r2    Sigma-70 region 2
    5.5e-14   51.6   0.0    8.4e-14   51.0   0.0    1.3  1  Sigma70_r4_2  Sigma-70, region 4
    4.3e-09   35.8   0.0    8.4e-09   34.8   0.0    1.5  1  Sigma70_r4    Sigma-70, region 4
     0.0065   16.4   0.0       0.47   10.3   0.0    2.1  2  Sigma70_ECF   ECF sigma factor
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.055   13.2   0.0    1.9  2  HTH_38        Helix-turn-helix domain
      0.061   13.2   0.1       0.13   12.2   0.1    1.5  1  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
      0.088   12.6   0.1       0.21   11.5   0.1    1.6  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.3   4.4e-18   1.1e-14       1      69 [.      27      94 ..      27      96 .. 0.96
   2 ?   -2.2   0.0       1.4   3.7e+03      49      57 ..     167     175 ..     161     178 .. 0.59

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 4.4e-18
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSS CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrr 69
                l+++  p ++++a r+l+++ +ae++++++fl +w ++e++dp+ + ++ +w + i+r+++id+lR+ +
  EHU00814.1 27 LYRQTSPHLFAIALRMLRHRPWAEEVLHDCFLTIWSKAETYDPALS-APMTWMTQIVRHRCIDWLRSGQ 94
                79999*****************************************.*******************855 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 HHHHHHHHH CS
  Sigma70_r2  49 fsawllria 57 
                 +++w+ r +
  EHU00814.1 167 VKSWIRRAM 175
                 555555443 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   3.3e-17   8.4e-14       3      54 .]     127     178 ..     125     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 3.3e-17
                   HHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   3 alrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +lr++++ L+ +qr+ ++l y++g+s+ +IA  l  ++g+Vks+++RA+++L
    EHU00814.1 127 RLRRCMENLSSEQRQSVTLAYYQGMSHSDIAHWLQQPVGSVKSWIRRAMAHL 178
                   79************************************************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.3e-12   8.4e-09       1      50 []     131     180 ..     131     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 3.3e-12
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +++ L+ ++r+ ++l +++g+++++I+  l+ + + V++ ++rA+ +LR+
  EHU00814.1 131 CMENLSSEQRQSVTLAYYQGMSHSDIAHWLQQPVGSVKSWIRRAMAHLRE 180
                 5889*********************************************7 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.013        33       6      42 ..      11      47 ..       7      67 .. 0.81
   2 !   10.3   0.0   0.00018      0.47     100     167 ..      92     166 ..      72     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
  Sigma70_ECF  6 elleqvkdGdaeaaeqllelvydeLrrlagsklkner 42
                 +l++++ +Gd  a e+l+++   +L  +a + l++ +
   EHU00814.1 11 TLMQAIVKGDRLAFEKLYRQTSPHLFAIALRMLRHRP 47
                 58999***************99999999999996654 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00018
  Sigma70_ECF 100 GGdvvraeldeeeds....vdsdspdelleLdea..lerlls.ldpeqarlvelrkleGlsveEiAeklgvskrt 167
                   G+ + a+ +e +d+    vd+d+pd + + ++a  l r ++ l+ eq++ v l++ +G+s  +iA+ l+    +
   EHU00814.1  92 SGQARMASTEEPHDDallvVDADEPDSRPDDAQAarLRRCMEnLSSEQRQSVTLAYYQGMSHSDIAHWLQQPVGS 166
                  555566665555555666666666666665444422556555599*********************999765544 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.69   1.8e+03      25      34 ..      37      46 ..      20      46 .. 0.72
   2 ?   13.2   0.0   2.1e-05     0.055       4      31 ..     134     161 ..     131     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.69
      HTH_38 25 eIArrLgrsp 34
                +IA r+ r++
  EHU00814.1 37 AIALRMLRHR 46
                7999998886 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.1e-05
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLg 31 
                  Ls e+R+     + +G+s ++IA +L 
  EHU00814.1 134 NLSSEQRQSVTLAYYQGMSHSDIAHWLQ 161
                 5999*********************996 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.1e-05      0.13       4      36 ..     141     173 ..     138     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
  Terminase_5   4 rqArlLYwqGyrvaeIAeelglkeatVysWkkr 36 
                  +   l Y+qG +  +IA  l+    +V sW +r
   EHU00814.1 141 QSVTLAYYQGMSHSDIAHWLQQPVGSVKSWIRR 173
                  333444************************999 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   8.1e-05      0.21       4      40 ..     137     173 ..     134     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.1e-05
      HTH_23   4 ereRlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                  ++R+++ l++ +G+s ++IA  L  +   v  w++r
  EHU00814.1 137 SEQRQSVTLAYYQGMSHSDIAHWLQQPVGSVKSWIRR 173
                 5789*********************999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1724.17
//
Query:       EHU00815.1  [L=215]
Description: hypothetical protein CKS_2920 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   81.1   9.0    2.3e-22   80.2   9.0    1.5  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   9.0   1.3e-26   2.3e-22       1     180 []      60     213 ..      60     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.3e-26
                 --HHHHHHHHHTT-X...........................XXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
        RskA   1 PpprlwarilaalaatpqaaaaaaaaaaapppaaapaararrlaaaaAaalllvlgqlavasaaldplrqsaaqaeavvavlaapdaagatatvvdsas 99 
                 Pp+r+w++i   l a+p  ++a +aa                +++aaA a+l+++ +      + +pl    ++++    v++a+            + 
  EHU00815.1  60 PPDRVWKKIVLNLPAKPSVRPARRAALG--------------WMVAAAIAVLALFSWRMFYVPEFTPLTVMSDAQQHSQWVVSAD-----------HDL 133
                 99*************9999888776666..............6666665555555556666666666666666666666666666...........788 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXX CS
        RskA 100 ggalvldvsglpalpagkvyqlWlipaggkpvslGvleaggsatltlpagpdlgaaaavaVTlEpaGGsqPt..psgpvvarg 180
                 ++++v++++++ ++++  ++qlWlip g++p+slG+l+a+++++l l  ++ l   a+va++ Ep+GGs Pt  p+gpv+++g
  EHU00815.1 134 TQLRVTPLQPV-TADSHTSLQLWLIPTGSRPISLGLLNAEQATQLALKRQDSLK-NAVVAISREPRGGS-PTgqPTGPVLYSG 213
                 8999999**99.99***********************66666666665555555.9*************.**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 2056.69
//
Query:       EHU00816.1  [L=530]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-50  171.5  31.0    1.4e-49  168.2  15.5    2.7  2  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    6.9e-06   26.4   6.3    1.3e-05   25.5   1.2    3.6  3  HAMP           HAMP domain
    0.00017   21.8  23.5      0.014   15.7   0.6    5.7  5  DUF948         Bacterial protein of unknown function (DUF948)
     0.0037   15.3  10.1      0.012   13.6   3.2    2.4  2  Prominin       Prominin
     0.0059   17.1  11.3      0.036   14.6   2.9    3.8  3  Syntaxin-6_N   Syntaxin 6, N-terminal
  ------ inclusion threshold ------
      0.032   12.9   9.9     0.0098   14.6   2.1    2.4  2  Tweety         Tweety
       0.41   10.7  17.3        3.2    7.8   2.7    3.9  4  DUF1664        Protein of unknown function (DUF1664)
        0.5   10.5   6.2        1.3    9.1   0.5    2.8  2  EcoEI_R_C      EcoEI R protein C-terminal
        1.2    9.3   8.2        1.3    9.2   3.8    3.1  2  SesA           N-terminal domain on NACHT_NTPase and P-loop N
        1.3    8.2   7.9       0.79    8.9   2.1    2.4  2  TMPIT          TMPIT-like protein
        5.8    6.3  11.5        6.2    6.2   1.4    2.7  3  Mce4_CUP1      Cholesterol uptake porter CUP1 of Mce4, putati
        6.2    6.3  20.7       0.52    9.8   0.8    4.9  4  4HB_MCP_1      Four helix bundle sensory module for signal tr
        6.7    7.3  30.0       0.35   11.4   7.7    4.4  4  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   7.7    0.0008       1.1      94     167 ..     233     303 ..     209     308 .. 0.71
   2 !  168.2  15.5     1e-52   1.4e-49       2     172 .]     306     462 ..     304     462 .. 0.98

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
                 HH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  94 liieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqavee 167
                 +  ++++++ +s++++e + + v+++s++++  +e+l   ++++++ a++++e aa+ +e+s+++ +++++   
  EHU00816.1 233 AFNALVENVAQSLSAVERSAHSVSTASSQISAGNEDL---SSRTEQQAASLEETAASMSELSETVRQTAENTRL 303
                 3333445666677777777777777777777777766...578999999999999999*****99999988765 PP

  == domain 2  score: 168.2 bits;  conditional E-value: 1e-52
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 +l+++a+e  +++  +v+ ++++m +i++ss++i+ ii+ i+++a+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rs  +a+ei++li     
  EHU00816.1 306 QLSKKAREISSDSSDKVHTMLGTMTDIKQSSEKITAIIALIEGVAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSSASAREIKDLI----- 399
                 68999*****************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          e++ + ve+g++++e+ ge++ ++ +a+ +v+dlv+eia as+eqs +i++v qav+++++vt
  EHU00816.1 400 ---------ESSMSYVETGVSQAEQVGENMGRMNDAIRQVTDLVDEIAIASQEQSLGISQVHQAVHQMDDVT 462
                 .........99**********************************************************996 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   1.2   9.4e-09   1.3e-05       5      51 ..     194     241 ..     190     243 .. 0.88
   2 ?    1.3   0.0      0.34   4.7e+02      12      28 ..     254     272 ..     250     303 .. 0.68
   3 ?   -2.0   0.1       3.5   4.8e+03       5      21 ..     422     438 ..     420     440 .. 0.58

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 9.4e-09
                 TTHHHHHHHHHHHHHHTTT.BTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaG.dldtrlpvsgrDEiGeLarafNaMldrL 51 
                 +i r L+ +++++++ ++  dl+ r ++ ++DEiG  a+afNa+++++
  EHU00816.1 194 SIRRHLNGMRTTMEHASERlDLTLRADDARKDEIGLTAKAFNALVENV 241
                 67777899999999999866*************************997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.34
                 HHHHHHHHHTTT..BTSST CS
        HAMP  12 rLaraarriaaG..dldtr 28 
                  +++a  +i+aG  dl++r
  EHU00816.1 254 SVSTASSQISAGneDLSSR 272
                 6788999999998888887 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.5
                 TTHHHHHHHHHHHHHHT CS
        HAMP   5 rilrPLrrLaraarria 21 
                 r+   +r++++ +++ia
  EHU00816.1 422 RMNDAIRQVTDLVDEIA 438
                 44445666666666665 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   1.8e+03      20      58 ..      11      42 ..       1      60 [. 0.59
   2 !   15.7   0.6     1e-05     0.014      11      86 ..     182     264 ..     172     267 .. 0.70
   3 !   12.0   1.3   0.00014      0.19      20      86 ..     230     296 ..     226     299 .. 0.93
   4 !    9.1   1.7    0.0011       1.6      27      75 ..     296     344 ..     277     359 .. 0.58
   5 ?    3.4   3.9     0.068        94      35      48 ..     427     464 ..     372     498 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
      DUF948 20 vllklkktldeaaatieelekqvdpilkevedllakvne 58
                v       l  ++++ + +++++ p + +++++++ +n+
  EHU00816.1 11 V-------LAGFQSRFQYVQDNTLPSIVDLDKMVNGSNR 42
                3.......3344455555566666666666666666665 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1e-05
      DUF948  11 vvLviflivvllkl.......kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 ++L ++ ++++l++       + t+++a+++++ + +  d+  +e+  + +  n+l+e+v + l +v++  ++v +++ ++s+
  EHU00816.1 182 LILGALSVRTILSIrrhlngmRTTMEHASERLDLTLRADDARKDEIGLTAKAFNALVENVAQSLSAVERSAHSVSTASSQISA 264
                 334445667777773334444555555555555555666777899999******************************99986 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00014
      DUF948  20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 + +  + +++++a+++  +e+ ++++++ + ++ a  ++l +  +++ +++++  +++ +l+e+v++
  EHU00816.1 230 TAKAFNALVENVAQSLSAVERSAHSVSTASSQISAGNEDLSSRTEQQAASLEETAASMSELSETVRQ 296
                 567778899********************************************************87 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0011
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdplte 75 
                    e+++   +l k++++i+ ++ d ++++  ++ d+++ +ek+ ++++
  EHU00816.1 296 QTAENTRLASQLSKKAREISSDSSDKVHTMLGTMTDIKQSSEKITAIIA 344
                 1223334444555666666666666666666677777777766666665 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.068
      DUF948  35 ieele........................kqvdpilke 48 
                 i++++                        +q+d ++++
  EHU00816.1 427 IRQVTdlvdeiaiasqeqslgisqvhqavHQMDDVTQQ 464
                 22222222222222222222221111111333333333 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   3.2     9e-06     0.012     623     731 ..     277     392 ..     256     404 .. 0.86
   2 !    5.8   0.9     0.002       2.7     223     289 ..     395     461 ..     388     493 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9e-06
    Prominin 623 kvnletlaekleelanelsngk..knlkqslkneaqdlraiqqelvlplessvkklkksvkklde.....ensdlqesikkllaaveraenflkkngse 714
                   +le++a+++ el++++ +    + l ++l ++a+++++  +++v ++  ++ ++k+s +k+ +     e+  +q++i  l aave+a    + +g  
  EHU00816.1 277 AASLEETAASMSELSETVRQTAenTRLASQLSKKAREISSDSSDKVHTMLGTMTDIKQSSEKITAiialiEGVAFQTNILALNAAVEAARAGEQGRGFA 375
                 5678889999999888887666667899*********************************************************************** PP

    Prominin 715 iinneskklldrileqf 731
                 +++ e ++l++r     
  EHU00816.1 376 VVAGEVRNLAQRSSASA 392
                 *******9999876655 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.002
    Prominin 223 gldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn 289
                 ++dl + + s v   +++ e+++en+ +++++++qv +l  e+   +++ + g+++v + ++q+   
  EHU00816.1 395 IKDLIESSMSYVETGVSQAEQVGENMGRMNDAIRQVTDLVDEIAIASQEQSLGISQVHQAVHQMDDV 461
                 5788888999999999*****************************************9999876444 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   1.7e+03       5      48 ..      61     106 ..      60     112 .. 0.69
   2 !   14.6   2.9   2.6e-05     0.036       3      97 ..     234     324 ..     194     336 .. 0.85
   3 ?    5.3   0.5      0.02        28       3      78 ..     374     450 ..     373     483 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
  Syntaxin-6_N   5 evkeeVqkslnkaeslyrrw..erlledtssstseeldetrteLrk 48 
                   e+++e+  +++++++l   +  +++ +d++++ se    + +++++
    EHU00816.1  61 EFEKEIAAKMDTLKGLTLFYlkNEITNDQDKQLSEHALALIKQIQT 106
                   6789999999999999999975576666665555555555555544 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.6e-05
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevke 97 
                   F+   e+V +sl+ +e   ++ +   ++++s+ +e+l++ +++  ++l++    +++L etvr   +  ++ ++ ++  ++ r++ ++  ++v +
    EHU00816.1 234 FNALVENVAQSLSAVERSAHSVST-ASSQISAGNEDLSSRTEQQAASLEETAASMSELSETVR---QTAENTRLASQLSKKAREISSDSSDKVHT 324
                   778889999999999999999987.455566679****************************5...54455666666666666666666666655 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.02
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtss..stseeldetrteLrkalrsiewdledLeetvriveknpskfkide 78 
                   F +v+ eV++ +++  +  r+ ++l e++ s  +t  +  e+  e    ++++  ++ dL + ++i++++ +  +i++
    EHU00816.1 374 FAVVAGEVRNLAQRSSASAREIKDLIESSMSyvETGVSQAEQVGENMGRMNDAIRQVTDLVDEIAIASQE-QSLGISQ 450
                   8899999999999999999999999988888644555555555566667788889999999999888775.4455554 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.1   7.1e-06    0.0098      89     166 ..     239     316 ..     227     347 .. 0.81
   2 ?    2.5   1.0     0.033        46     110     183 ..     386     460 ..     375     490 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
      Tweety  89 dGvlqltyslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselpflkk 166
                 + v q ++++++  h +++ ++++s+ +e+l+++ e++ ++lee  a+  +l et+r++ e+++ + q  ++ + +++
  EHU00816.1 239 ENVAQSLSAVERSAHSVSTASSQISAGNEDLSSRTEQQAASLEETAASMSELSETVRQTAENTRLASQLSKKAREISS 316
                 557788889999999********************************************9998877776665554433 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.033
      Tweety 110 klvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselp.flkkkdvsltelaeqvelvel 183
                 ++ s+++++++  +e+++  +e+ +++ +++ e + +++  +++v++ ++e++   +++++ ++++ + v++++ 
  EHU00816.1 386 QRSSASAREIKDLIESSMSYVETGVSQAEQVGENMGRMNDAIRQVTDLVDEIAiASQEQSLGISQVHQAVHQMDD 460
                 555556666666666666666666666666666666666666666666666664444556666666666666554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.024        34      46     112 ..     195     261 ..     190     271 .. 0.71
   2 ?    7.8   2.7    0.0023       3.2      35     103 ..     230     301 ..     224     314 .. 0.56
   3 ?    4.3   3.2     0.029        40      41     114 ..     271     347 ..     264     351 .. 0.64
   4 ?    6.9   2.0    0.0044       6.1      66     115 ..     411     460 ..     380     492 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.024
     DUF1664  46 vskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                 + ++l+ + ++++++ ++L   +   d++ de   ++k+ ++ v++v + ls++++  +sv++a ++
  EHU00816.1 195 IRRHLNGMRTTMEHASERLDLTLRADDARKDEIGLTAKAFNALVENVAQSLSAVERSAHSVSTASSQ 261
                 5667777777777777777777777777777777777777777888888887777777777766555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0023
     DUF1664  35 Tkrslsdavesvskqleqvs...eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedv 103
                 T + ++  ve+v+++l  v    +s++++  ++s+  + + ++ ++q++  +e+++ ++e++e ++++ e+ 
  EHU00816.1 230 TAKAFNALVENVAQSLSAVErsaHSVSTASSQISAGNEDLSSRTEQQAASLEETAASMSELSETVRQTAENT 301
                 556666666666666666554444455555555555555555555555555555555555555555544433 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.029
     DUF1664  41 davesvskqleqvseslaatkrhLssrid..rvdkkld.eqkeiskeikeevtevredlseigedvesvkeavegle 114
                 +  e+ + +le+  +s+++  +   +  +  r+ ++l  +  eis++ +++v+++ + +++i++ +e++ +++  +e
  EHU00816.1 271 SRTEQQAASLEETAASMSELSETVRQTAEntRLASQLSkKAREISSDSSDKVHTMLGTMTDIKQSSEKITAIIALIE 347
                 55555555666665555544444444333114555554156789999999999999999999999999998887665 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0044
     DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 s+ ++v++++  ++++++++++ v+e+    +e +  +++v++av++++ 
  EHU00816.1 411 SQAEQVGENMGRMNDAIRQVTDLVDEIAIASQEQSLGISQVHQAVHQMDD 460
                 55677888888888888888888888888888888888888888888774 PP

>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.6     0.063        87       6      41 ..      61      96 ..      60     108 .. 0.94
   2 ?    9.1   0.5   0.00094       1.3       5      98 ..     274     367 ..     271     401 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.063
   EcoEI_R_C  6 kfrkfieenkdsidaLqiiwsdreltkellkeLeek 41
                +f+k i  + d++  L  ++ + e+t ++ k+L+e+
  EHU00816.1 61 EFEKEIAAKMDTLKGLTLFYLKNEITNDQDKQLSEH 96
                699*******************************99 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00094
   EcoEI_R_C   5 ekfrkfieenkdsidaLqiiwsdreltkellkeLeekLkepppgitpealweayellek.kvspq.ltdlidlirkiagldeeletrserverafk 98 
                 e+  + +ee ++s+ +L+   ++     +l  +L++k  ++    + +++ +++  + + k+s++ +t +i li  +a++  +++    +ve+a++
  EHU00816.1 274 EQQAASLEETAASMSELSETVRQTAENTRLASQLSKK-AREISSDSSDKVHTMLGTMTDiKQSSEkITAIIALIEGVAFQ-TNILALNAAVEAARA 367
                 5556678888888888888888777777777777777.4444455566666777666666666668**************.679999999999876 PP

>> SesA  N-terminal domain on NACHT_NTPase and P-loop NTPases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.8   0.00094       1.3      30     115 ..     240     329 ..     221     336 .. 0.74
   2 ?   -0.3   0.1      0.86   1.2e+03      68     101 ..     422     457 ..     394     471 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00094
        SesA  30 evgkrLplvq...etLedaksqlesskldedtesaikpvlesckekatkleeifekvapapadsrl.eryrkavrs..lgkgskVEtLmkgi 115
                 +v+++L  v+   +  ++a sq++++++d +++   ++ ++s +e a++++e+ e+v+++++++rl  +  k++r+      +kV t+  ++
  EHU00816.1 240 NVAQSLSAVErsaHSVSTASSQISAGNEDLSSR--TEQQAASLEETAASMSELSETVRQTAENTRLaSQLSKKAREisSDSSDKVHTMLGTM 329
                 566666666611134566666666666666655..79****************************999999999985445566777665554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.86
        SesA  68 sckekatkleeifekvapapadsrl..eryrkavrs 101
                 + +++++++ ++ +++a a ++++l   ++++av +
  EHU00816.1 422 RMNDAIRQVTDLVDEIAIASQEQSLgiSQVHQAVHQ 457
                 456677777777777755555544334666666665 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.1   0.00057      0.79       6      83 ..     240     319 ..     235     368 .. 0.62
   2 ?    2.1   0.4     0.067        93      10      84 ..     412     464 ..     379     493 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00057
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlk 83 
                 ++++++ ++e +a+++ + + ++s+ ++++s+++++q   l+e  +s+++l+++v+  +e+ + +++l+++ +e+++  +
  EHU00816.1 240 NVAQSLSAVERSAHSVSTASSQISAGNEDLSSRTEQQAASLEETAASMSELSETVRqtAENTRLASQLSKKAREISSDSS 319
                 55666666666666666666666666666666666666666666666666666644333444444455444444443333 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.067
       TMPIT  10 efkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlke 84 
                 +++++ e+  +++  +++++ l ++++ + ++q+  ++++++++++++                         ++
  EHU00816.1 412 QAEQVGENMGRMNDAIRQVTDLVDEIAIASQEQSLGISQVHQAVHQMDDV----------------------TQQ 464
                 23333333333444444444444444444444444444444444443332......................222 PP

>> Mce4_CUP1  Cholesterol uptake porter CUP1 of Mce4, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.6     0.083   1.1e+02      32     104 ..     226     295 ..     218     303 .. 0.49
   2 ?    4.5   2.4     0.015        21      18     108 ..     261     351 ..     252     362 .. 0.91
   3 ?    6.2   1.4    0.0045       6.2      30     104 ..     417     494 ..     401     507 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.083
   Mce4_CUP1  32 rlGesltdlnevLdelNprlpqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdalllaav 104
                 ++G + +++n++++++ ++l  +++  +++ +++   ++  +dl +  ++    +++++e +a++++l  ++ 
  EHU00816.1 226 EIGLTAKAFNALVENVAQSLSAVERSAHSVSTASSQISAGNEDLSSRTEQ---QAASLEETAASMSELSETVR 295
                 55555555555555555555555555555555555555555555443322...22333333333333333333 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.015
   Mce4_CUP1  18 tLsAvaeALeGrGerlGesltdlnevLdelNprlpqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdalllaavglsn 108
                  +sA  e L+ r e+   sl++  + ++el + + q  e+ r   +l++   ++++d  d ++ +  t + i++ ++++ a+++ + g++ 
  EHU00816.1 261 QISAGNEDLSSRTEQQAASLEETAASMSELSETVRQTAENTRLASQLSKKAREISSDSSDKVHTMLGTMTDIKQSSEKITAIIALIEGVAF 351
                 5788899999*********************************************************************999887776665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0045
   Mce4_CUP1  30 GerlG...esltdlnevLdelNprlpqlredireladladvYadaapdlldaLdnavttsrTiveqqaeLdalllaav 104
                 Ge++G   +++ ++ +++de+     + +  i+++ ++ +  +d+ ++    +++a+  sr++ +q+ +L++l++a v
  EHU00816.1 417 GENMGrmnDAIRQVTDLVDEIAIASQEQSLGISQVHQAVHQMDDVTQQNAALVQEASSASRSLMDQAGALNDLVAAFV 494
                 444441113455555555555555556667789999999999*****************************9998876 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.8   0.00038      0.52      30     180 ..      12     165 ..       1     166 [. 0.79
   2 ?    4.4   0.6     0.018        25       7      40 ..     169     202 ..     165     206 .. 0.88
   3 ?   -0.4   0.4       0.5   6.9e+02     146     175 ..     275     303 ..     256     312 .. 0.64
   4 ?    3.5   0.2     0.033        45      76     136 ..     412     473 ..     387     492 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00038
   4HB_MCP_1  30 lkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieeleaeidkllekyektilteeEkellee.fkeqlnaYrevrkk 127
                 l   ++ ++ +  + l +i dl ++ +  ++++ +l+++  +kd+a+  e +k+i  +++ +  l+  y k  +t ++ ++l+e     +++ ++    
  EHU00816.1  12 LAGFQSRFQYVQDNTLPSIVDLDKMVNGSNRVNVSLYRHQSAKDSAKPVEFEKEIAAKMDTLKGLTLFYLKNEITNDQDKQLSEhALALIKQIQTRLPA 110
                 5566778899999*****************************************************999998888887665555045556666777788 PP

   4HB_MCP_1 128 vlelakegkkdeAyqlye..tegrparekliealeelvdlnlkvAeeaykdnkas 180
                 +le +++ +     ++++  + + ++ ++lie+ ++  + n +v+   +k+n++ 
  EHU00816.1 111 FLEYSRSHDDAHSLSALQgpDGVGQSIRDLIESYQNQLQFNVQVGAAFQKENNRV 165
                 8888888887755555552223448888888888888888888888888888776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.018
   4HB_MCP_1   7 KLillflllallliivGvvGlyslkkinknletm 40 
                  L+ l++ ++++++i+G+++++ + +i + l+ m
  EHU00816.1 169 TLWALIAGSSVIILILGALSVRTILSIRRHLNGM 202
                 5999******************999999988877 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.5
   4HB_MCP_1 146 tegrparekliealeelvdlnlkvAeeayk 175
                 +++  + e++ ++++el+++ ++ Ae++  
  EHU00816.1 275 QQA-ASLEETAASMSELSETVRQTAENTRL 303
                 333.55566666666666666666666554 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.033
   4HB_MCP_1  76 ekdellkdieeleaeidkllekyektilteeEke.lleefkeqlnaYrevrkkvlelakegk 136
                 + +++ +++ + ++ i + +   +++ + ++E+   ++++++++ + ++v ++  +l++e  
  EHU00816.1 412 QAEQVGENMGRMNDAIRQVTDLVDEIAIASQEQSlGISQVHQAVHQMDDVTQQNAALVQEAS 473
                 55666666666666666666666666666666664466666666666666666666666554 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   7.7   0.00025      0.35      11      86 ..     226     300 ..     221     301 .. 0.93
   2 ?   -1.2   0.1       2.1   2.9e+03      28      61 ..     331     364 ..     300     370 .. 0.51
   3 ?    7.5   1.2    0.0042       5.8       6      73 ..     375     445 ..     372     454 .. 0.80
   4 ?    0.2   4.1      0.77   1.1e+03      10      48 ..     449     487 ..     441     519 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
  T7SS_ESX_EspC  11 hlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaa 86 
                    ++   a+ +++ ++++a++++a+ ++sa+++++  +  +a n ++++  + ++a++e++aa+++eL++ +r++A++
     EHU00816.1 226 EIGLTAKAFNALVENVAQSLSAV-ERSAHSVSTASSQISAGNEDLSSRTEQQAASLEETAASMSELSETVRQTAEN 300
                    5566789999*************.9999999999****************************************85 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
  T7SS_ESX_EspC  28 savaaaagasaavldshGpicaatndavaaaeaa 61 
                    +  +++ + +a ++   G+ ++   +a++aa++a
     EHU00816.1 331 DIKQSSEKITAIIALIEGVAFQTNILALNAAVEA 364
                    3333333333334444455555555555555554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0042
  T7SS_ESX_EspC   6 sVdpdhlrelaakhdevaaeiasavaaa...agasaavldshGpicaatndavaaaeaarraagealaaas 73 
                     V+++++r la++  + a ei+++ +++   ++++ + +++ G     +nda++++ ++ ++ + a +++s
     EHU00816.1 375 AVVAGEVRNLAQRSSASAREIKDLIESSmsyVETGVSQAEQVGENMGRMNDAIRQVTDLVDEIAIASQEQS 445
                    599*********************99886444555666788999999999999999988877666666665 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.77
  T7SS_ESX_EspC  10 dhlrelaakhdevaaeiasavaaaagasaavldshGpic 48 
                    +++ ++ +++d+v ++ a++v+ a+ as++++d+ G++ 
     EHU00816.1 449 SQVHQAVHQMDDVTQQNAALVQEASSASRSLMDQAGALN 487
                    678888899999999999999999999999999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2263  (0.12622); expected 358.6 (0.02)
Passed bias filter:                      825  (0.0460148); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.45
# Mc/sec: 3541.38
//
Query:       EHU00817.1  [L=622]
Description: Kup system potassium uptake protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-199  663.5  23.9   2.4e-199  663.3  23.9    1.0  1  K_trans   K+ potassium transporter
     0.0014   18.5   0.1     0.0063   16.3   0.0    2.1  2  PSS       Phosphatidyl serine synthase


Domain annotation for each model (and alignments):
>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  663.3  23.9  2.6e-203  2.4e-199       2     534 .]      14     544 ..      13     544 .. 0.99

  Alignments for each domain:
  == domain 1  score: 663.3 bits;  conditional E-value: 2.6e-203
     K_trans   2 lqalgvvygdigtSPLYvlksif.eakatepseedilGvlSlifwtLilivtvkYviivlradnkgeGGilaLlaliaslkkskkkakwlllilaliGa 99 
                 l+a g+v+gdigtSPLY+lk+++    +  ++ee+++G lSlifw L+livtvkYv++++rad++geGGil+L++l++  ++   + + ++++++l+G 
  EHU00817.1  14 LAAAGIVFGDIGTSPLYTLKECLsILPSGAVTEEAVMGFLSLIFWGLMLIVTVKYVMFIMRADHDGEGGILTLMSLAR--QNVGATLSRIIVLAGLTGG 110
                 7899*******************7788999************************************************..7777777788899****** PP

     K_trans 100 alllgDgvltPaisvlsAveGlevaspsleklvvpislvilvlLFliQkfGtekigklfgpimliWflllavlGilnivkkpsvlkAlnPlyaiefllr 198
                 a+++gDg++tPaisvlsAveG+ev++p+l++++vp+++vil+lLF+iQk+Gte+++++fgpiml+Wf++la+lG++ i+++p+vl+AlnP +a++fll+
  EHU00817.1 111 AFFYGDGIITPAISVLSAVEGIEVVAPALDRYIVPLAVVILTLLFVIQKHGTERVSRVFGPIMLVWFITLAILGVHGILMNPHVLHALNPAFALKFLLN 209
                 *************************************************************************************************** PP

     K_trans 199 nklagflvLgavlLavTGaEaLyaDlGhfgkkpirlawlllvlpaLllnYlGQgalllknpeavsnpfyelipealllpllvlatlatiiASQalIsgv 297
                 +++ +f++Lg v+LavTGaEaLyaD+Gh+gk+pirlawl+++lpaL+lnY+GQgal+l np+a++npfy l+p ++ +pl++l+tlat+iA Qa+Isgv
  EHU00817.1 210 HEALSFAALGMVVLAVTGAEALYADMGHLGKTPIRLAWLIIALPALVLNYFGQGALVLVNPAAIQNPFYILAPVWAQIPLIILSTLATVIAAQAIISGV 308
                 *************************************************************************************************** PP

     K_trans 298 FslvsqaiklgllPrlkvvhtsekeegqiYiplvNwllliavilvvlvFksssnlaaAYGlavtltmlittlllllvlvlvwklklilvllvlllflli 396
                 ++l++qai+ g+lP ++v+ ts++e+gqiYip+vNwll+ av +v+l+F++ss+l++AYG+ vt+tm++t++l+ +v+ + wk++l ++l++ll++l+i
  EHU00817.1 309 YTLTHQAIRQGFLPPMRVIFTSATESGQIYIPVVNWLLFGAVTVVILAFRQSSALSSAYGIVVTGTMVLTACLAGIVAFKNWKWPLPVALVFLLCMLAI 407
                 *************************************************************************************************** PP

     K_trans 397 dllflsanlkKipeGgwvplllavvlllimltWkygrkkllekeaeeevpleellkllekkkvkrvpgtavflssaketvpavllhilkklkvlhervv 495
                 d+ ++++nl K+ +Ggwvp+lla+++l++ml+W+  r++l+++ +++ v+l+ l ++le + + rv gta+fl++++ ++p++llh+lk+++vlher+v
  EHU00817.1 408 DVPLFISNLMKLLSGGWVPVLLAMTMLMLMLIWSGERSRLIRRLTDDPVRLKALISSLEASPPMRVGGTAIFLTRKEYEIPQALLHNLKHNRVLHERTV 506
                 *************************************************************************************************** PP

     K_trans 496 llsvktlevpkvpkeerveveklkseglvrvvvryGfme 534
                 ll++kt++ p+v++++r+ +++l+ +++++v+++yG+ e
  EHU00817.1 507 LLHIKTVDLPRVHNQKRIALRQLS-PSFWQVTAEYGWHE 544
                 ************************.***********976 PP

>> PSS  Phosphatidyl serine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.32   2.9e+03       4      40 ..      56      92 ..      55     100 .. 0.70
   2 !   16.3   0.0   7.1e-07    0.0063     155     251 ..     515     616 ..     474     620 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.32
         PSS  4 avWrvvlglsvlYllllvfllfqdledarqllklldp 40
                ++W ++l ++v Y+++++         + +l++l  +
  EHU00817.1 56 IFWGLMLIVTVKYVMFIMRADHDGEGGILTLMSLARQ 92
                6999999999999999987665555555555555555 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.1e-07
         PSS 155 ikslkkklkrvlkqftpaswt...eyeWkktkslkrflavllll.vvvllleLnvFflkavlelppshllvllRllllallaaaavrelyeyvtd.kkv 248
                  ++++++++ +l+q++p  w+   ey W++  s+k +l+++ l  + ++l e ++F    +l ++++  l  +R +++ ++   a+r   +++   ++v
  EHU00817.1 515 LPRVHNQKRIALRQLSPSFWQvtaEYGWHERPSMKDVLHLCGLEgFGCTLNEASFFTSHDTLVMKKRRGLAHARGAIFHFFQRNALRAHEQFMIPpNRV 613
                 445667777889*****9996444899************998862668888888888999****************************99999753555 PP

         PSS 249 krl 251
                  +l
  EHU00817.1 614 IEL 616
                 555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4600.36
//
Query:       EHU00818.1  [L=111]
Description: FMN-binding negative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0039   16.9   0.0     0.0048   16.6   0.0    1.1  1  FMN_bind_2  Putative FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.7e-07    0.0048     112     167 ..       3      55 ..       1      56 [. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.7e-07
                 EEEEE---HHHHHHHHHHHHHHHS---...--S-------HCHHHCTEEEEEEEEE CS
  FMN_bind_2 112 GkakviedeeelrkqledltdqaEaerkkpwkvedapekyiekllkaIvgieieit 167
                 G  +++ +++el + l+++ + +++      + +  p++y +kl+++I+g++iei+
  EHU00818.1   3 GISRLM-TQAELGQSLDRMLAAFQP--GLRQDKQRLPDDYQQKLMQGITGVRIEIS 55 
                 667777.9999*************9..555556789******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 869.31
//
Query:       EHU00819.1  [L=126]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-22   80.4   0.0    1.7e-22   80.2   0.0    1.1  1  DDE_Tnp_IS66    Transposase IS66 family
      7e-17   61.4   0.1    1.5e-16   60.3   0.1    1.6  1  DDE_Tnp_IS66_C  IS66 C-terminal element
  ------ inclusion threshold ------
      0.062   14.0   0.1       0.18   12.5   0.1    1.7  2  WGG             Pre-rRNA-processing protein TSR2


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   2.9e-26   1.7e-22     207     281 ..       1      75 [.       1      76 [. 0.97

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 2.9e-26
  DDE_Tnp_IS66 207 laeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                   +++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00819.1   1 MQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 75 
                   57899********************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.1   2.5e-20   1.5e-16       1      39 []      82     119 ..      82     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.5e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00819.1  82 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 119
                     9************************9.************ PP

>> WGG  Pre-rRNA-processing protein TSR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     3e-05      0.18       4      29 ..      24      49 ..      22      61 .. 0.81
   2 ?   -2.0   0.0         1     6e+03      25      42 ..      91     108 ..      81     117 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
         WGG  4 gvalilhlWtaLklavengwggpdsa 29
                + a +l++W+aL+l  +ngw   d +
  EHU00819.1 24 AFAYLLKQWDALNLYCSNGWAEIDNN 49
                56889***************987765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
         WGG  25 gpdsadkrdwlagaivdl 42 
                 g d +   + ++g+i d+
  EHU00819.1  91 GVDPETWLRYVIGHIQDW 108
                 555554445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1002.52
//
Query:       EHU00820.1  [L=115]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-21   76.7   0.0    1.5e-21   76.4   0.0    1.1  1  HTH_18    Helix-turn-helix domain
    2.9e-14   52.7   0.0    2.6e-09   36.9   0.0    2.2  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.7e-25   1.5e-21       2      80 ..      28     105 ..      27     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.7e-25
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 ++++g+s ++Lqr+fk+++g +  ey+r ++l++  ++L+ +t+ ++  +A  lGF+++++F+r f++ +g+ P+++rr
  EHU00820.1  28 SERAGYSKWHLQRMFKEHTGYPLGEYIRMKKLKKSADRLT-STNEPILNVAISLGFDSQQSFNRSFKRQYGVAPGAWRR 105
                 689************************************8.5************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.5e-06      0.04       1      35 [.      14      48 ..      14      55 .. 0.87
   2 !   36.9   0.0   2.9e-13   2.6e-09       6      42 .]      68     105 ..      66     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-06
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGm 35
                + +n+  +l ++ +++ +g+S  +++r Fk+ tG 
  EHU00820.1 14 IDNNIEARLDLDTVSERAGYSKWHLQRMFKEHTGY 48
                5678889999***********************97 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 2.9e-13
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 stn  i ++A  lgf S++ F r Fk+++G+ P ++r+
  EHU00820.1  68 STNEPILNVAISLGFdSQQSFNRSFKRQYGVAPGAWRR 105
                 899*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 941.25
//
Query:       EHU00821.1  [L=145]
Description: hypothetical protein CKS_3571 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-23   82.3   0.1    3.8e-23   82.0   0.1    1.1  1  Ribonuclease  ribonuclease


Domain annotation for each model (and alignments):
>> Ribonuclease  ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.1   2.1e-27   3.8e-23       1      88 [.      55     142 ..      55     143 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.1e-27
  Ribonuclease   1 LPseartklqaieaGskags.gpfry...ksigGdvfgNreglLPkkksgyYrEydvntpgekyrgadRivtg.dgldsketyytadhyesFv 88 
                   LP+ ++tk qa++ G+++ + +++++   ++igGd+f+Nre++LP++++++++E+dvn++++ +r adR+v++ dgl    ++ ++dhy+sF+
    EHU00821.1  55 LPDYYITKKQARRLGWNPAKgNLCDVlpgRAIGGDRFSNRERKLPERSDRQWYEADVNYRCG-HREADRLVYSsDGL----VFLSTDHYRSFK 142
                   8*******************9999999999********************************.**********9999....***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1153.68
//
Query:       EHU00822.1  [L=87]
Description: ribonuclease inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-12   46.3   0.6    3.6e-12   46.1   0.6    1.1  1  Barstar   Barstar (barnase inhibitor)


Domain annotation for each model (and alignments):
>> Barstar  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.6     2e-16   3.6e-12       2      71 ..       6      77 ..       5      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2e-16
     Barstar  2 ldgakirdkadfldeiaealgfPdyfGrNlDALdDcLtd.....aegyviviegsaalrkalpeafetllevled 71
                +d+ + +d+++f++++a++ +  + fG+NlDAL+DcLt+     a    i++ ++++ +++l+  ++ l+e  + 
  EHU00822.1  6 FDLGELADRDAFYRQFAAQSDCSGDFGNNLDALWDCLTGgmalpA---EIYLLNADRHDADLAPVLALLEEAAQS 77
                689999***************9999**************997665...899999999999988887777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       179  (0.00998383); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 773.82
//
Query:       EHU00823.1  [L=791]
Description: putative virulence factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-135  453.3   1.3      2e-71  241.4   0.8    2.0  2  Virul_Fac  Putative bacterial virulence factor


Domain annotation for each model (and alignments):
>> Virul_Fac  Putative bacterial virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.4   0.8   1.1e-75     2e-71       2     435 ..      27     440 ..      26     446 .. 0.92
   2 !  211.7   0.0   1.1e-66     2e-62     519     872 ..     443     784 ..     436     786 .. 0.88

  Alignments for each domain:
  == domain 1  score: 241.4 bits;  conditional E-value: 1.1e-75
   Virul_Fac   2 leWveevrenaervdseadslieklrrsrnaarrlgkaaerpmsvgvFGlSQAGKSyLiSaLAadaegkLetdlggekldFikhiNPpGggkEaTGLvT 100
                 l+W+e++re+++r++ ea++l+ +lr++r++++ l++   rp++ ++FG SQAGK +L+  + ada+g+L t l  + +++ +hiNP      aT   T
  EHU00823.1  27 LAWIENTREQSPRLALEAETLTLQLRQARVQTQALAQQVARPVTLALFGQSQAGKAWLLTEMVADAQGQLITALSDKPVNYFQHINPGN-LDFAT--AT 122
                 79************************************************************************************966.66788..7* PP

   Virul_Fac 101 RFtrkaeaapagfPieLrLlsEidiakilaNsffeDfdkekveveleeekirallkelearaqaepvpglseddvvdladYleknfakslealkadywe 199
                 RFt ++e+ ++++P+eL L+sE+++ +  +         e v  ++++++i++++++l++++ ++p pgl++d++v l+ +++++     ++l++++w+
  EHU00823.1 123 RFTHQREPLSSEWPVELALMSEAEVLRLAISC------GEGV-SQPDTANIDSVIQRLQRHRLTTPLPGLESDALVTLWSWCRRHHLY-DAQLDRHFWP 213
                 ***************************76643......3444.47999**********************************999876.56789***** PP

   Virul_Fac 200 eavelaprLsledRaelfsvlWgeleeltevYlqlaeaLarlghaeevfapleaLvkeeegklsqadSIidVdvLerlgksed..dsvevlpekegelg 296
                 +avelap+Ls++dR +lfs+lW   ++l e+ ++l +  ++l ++++v  pl+ L+ +         S++  + L    +++d   ++e++p + ++l+
  EHU00823.1 214 QAVELAPWLSVDDRVQLFSLLWPAEPALNELVRSLLHLRHQLRNSTRVLGPLSLLTDS---------SLLPAEQLIVPASEQDlsLHIEICPLNGNRLA 303
                 *****************************************************99765.........688888888777777766899*********** PP

   Virul_Fac 297 aevslsraelaaLtaElvfplaeeprvplfeevDLLDFP..GyRgRlklesleevkeeenpvaqLlLRGKvAYLFerYtdeqelnvlllCtpsskqsev 393
                 ++ ++ +  la Lt E+++pl+++pr+++ +e D+L  P  G  +  +l + ++  +++++++  lL  K   L   Y + q +  ll+Ct+ s+  +v
  EHU00823.1 304 KPQHVALGLLALLTLEVTIPLSSTPRTAFYDEADMLELPapGTPSDAALREERQRLQQQDALRARLLEHKRTLLPGIYAARQGIDLLLICTAASQRQDV 402
                 ************************************99622666666666555556688************************************99** PP

   Virul_Fac 394 kdlgpvleeWidktqGetpeeRarrkagLlwvlTkfDkrlee 435
                    +++l+eW    q  +p++ a +k+ L+w++T +D r ++
  EHU00823.1 403 DIASRALREW----QRLQPKNDAGEKPRLIWAITPYDARHQQ 440
                 **********....5578*******************99776 PP

  == domain 2  score: 211.7 bits;  conditional E-value: 1.1e-66
   Virul_Fac 519 eseavqrhvadpeeawdaalklnDGGvsrlaekLekvakpelKlerieeqldeiaeelvearLaayyqaddaee.vekkkklaeeilkalektlekakl 616
                  +eavqr v +p + w  +l+l+  Gv r++e L+  ++pe++++++  ql +i++ +ve+rL+++ +a    +   +k+++a+++lk+l+   +++ l
  EHU00823.1 443 VDEAVQRQVGQPGQQWGSMLALDRAGVDRMSEWLQDEMQPEARRDQLIAQLAQIQHMVVERRLQPWTEAGASPDqAVRKQNIADTLLKCLQ---HRTGL 538
                 5899****************************************************************9998886899*************...9999* PP

   Virul_Fac 617 fgelLkaLqvseetlrelylreeeveeeakeeaeaeavadeavaaaletaapaaaldlfsdaaaaaaaaaapaakaeeqarksaeeefaeavleeWieh 715
                 +gelL++Lq+s+e+lr+l+l+++ ++    ++       +++ +a+ ++     ++dlfsda+ +     +pa+++++    +  ++f ++v++ W++h
  EHU00823.1 539 HGELLERLQPSREALRQLWLNQSGSS--VPAA-------TTSIQAPENQFGIGFEFDLFSDAEIE-----QPAPQQSS--FGQGLTQFPRQVFSLWLNH 621
                 *********************33222..2222.......233333434333445599***94433.....33333333..3444579************ PP

   Virul_Fac 716 LralsedaellaalglskeaveelvdElitaaeRlkleeklaealaeteqagvkreklaerqvlvaaeaindFvawLGfeelpeeerpeselekgkkiF 814
                 Lr+l+e+++ll+ l++ k+++e l++Elita  R+++ ++l++al+e + ++++ e+ a+rqv++a+++++dFvawLGf + pe+erp+s++++g++iF
  EHU00823.1 622 LRQLPENQSLLTLLNIDKATMEWLIEELITASFRTGILQSLQTALHEPDAQSMSHESRADRQVTRAMTVLGDFVAWLGFLQRPEAERPASRVNRGQSIF 720
                 *************************************************************************************************** PP

   Virul_Fac 815 apppaeaaa......lpeLdeepenyseeylldWlvalaalaveNaghsagreisaeqNerLge 872
                 ++ppa + +      l++L+++p+n+++ y++dWlv+l+++++eN g + g ++     e+L +
  EHU00823.1 721 SRPPAPSVNfsagqrLTKLSATPANHTAYYIYDWLVGLNTVIIENNGYTGGGDLPVSAREALAD 784
                 ***999887788899************************************9998888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5257.19
//
Query:       EHU00824.1  [L=391]
Description: putative MFS superfamily benzoate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-124  415.4  44.8   2.2e-124  415.1  44.8    1.0  1  BenE             Benzoate membrane transport protein


Domain annotation for each model (and alignments):
>> BenE  Benzoate membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.1  44.8  1.3e-128  2.2e-124       4     377 ..      11     384 ..       9     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 415.1 bits;  conditional E-value: 1.3e-128
        BenE   4 slsavlagllavligyagslviifqaaqaaglseaqiaswllalslvmglsgillslryrvPvvtaWstPgaalLvtslpglslaeavgaflvsaallv 102
                 +l++v++g++avl+gy+++ +ii+qaaqaag+ +a ia+w   ++++mg+++  lsl yr+Pv+ aWstPgaalL+tslpg sl+eavg+f+++++l+v
  EHU00824.1  11 TLPMVVSGFVAVLVGYSSTGAIIYQAAQAAGAPPALIAGWFSVIGIAMGIASTGLSLAYRMPVLAAWSTPGAALLATSLPGTSLNEAVGVFVFANVLIV 109
                 6789*********************************************************************************************** PP

        BenE 103 lvGisgaldrlvkriPkslaaallagillrfglkavkaleqqpllvlalllsyllarrfaPryavllvLvvgvlvavllGklelaalalelarpewitP 201
                 l+G++g ++rl+++iP slaaa+l gillrfgl++++ +++++ l++++ +s+llarr   ry +l+ L+vgv++av++ +l++ a a + + p  + P
  EHU00824.1 110 LCGVTGLFARLMNHIPASLAAAMLVGILLRFGLQTFSDFAVNFPLAATMCMSWLLARRWLARYVILITLLVGVTLAVAQNSLHFPAQAARFSLPAPVWP 208
                 *************************************************************************************************** PP

        BenE 202 efslaallslalPlvlvaltsqflpGlavLkaagYeapakplivatglasllaapfGgvtvnlaaitAaictgpdahedkarryvaalaaglfyllagi 300
                 +fsl++l+ ++lP +lv+++sq+ pG+a L+a+gY++ ++ l++ tgl++l+++pfGg++v +aaitAaic+g+++++d++rr++aa++ag+ yllag+
  EHU00824.1 209 SFSLHTLIGIGLPYFLVTMASQNAPGIATLQAHGYRPSVSGLMSWTGLLALVLSPFGGFSVCVAAITAAICMGEEVDPDPRRRWIAAAVAGGCYLLAGV 307
                 *************************************************************************************************** PP

        BenE 301 faatlvalfaalPkelvallAglALlgaiasalqaalkderereaalvtflvtasgltllgigaafwGlvlGllvll 377
                  +a +++lf+alP+ +v ++A lAL+++++++lq+al+++++r++al++fl+tasg+tllgig+afwGlv G++++l
  EHU00824.1 308 SGALIAMLFSALPAVMVHVVARLALVTTLGGSLQRALAEPADRDSALLAFLITASGVTLLGIGSAFWGLVGGVIAHL 384
                 ************************************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2803.03
//
Query:       EHU00825.1  [L=181]
Description: Cro/CI family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-16   58.4   0.0    8.1e-16   57.8   0.0    1.3  1  HTH_3     Helix-turn-helix
    7.5e-10   39.0   0.0    1.5e-09   38.0   0.0    1.5  1  HTH_31    Helix-turn-helix domain
    2.4e-08   33.5   0.0    4.3e-08   32.8   0.0    1.4  1  Cupin_2   Cupin domain
    1.3e-05   25.1   0.0    2.2e-05   24.4   0.0    1.3  1  HTH_19    Helix-turn-helix domain
    3.2e-05   23.7   0.0    5.4e-05   23.0   0.0    1.3  1  HTH_25    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   2.3e-19   8.1e-16       1      54 [.      12      65 ..      12      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.3e-19
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                lk+lR+++g+s++  Aek+Gvs++ + +iE+Ge++P++ tl+k+a  ++v++++
  EHU00825.1 12 LKQLRQANGWSLTLTAEKTGVSKAMLGQIERGESSPTIATLWKIATGFNVPFSF 65
                8**************************************************986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   4.3e-13   1.5e-09       2      57 ..       8      62 ..       7      69 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 4.3e-13
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                LG+ L++lR++ G+s++  Ae +gvs++ l+++E+G+   p+ a+l ++a++++++
  EHU00825.1  8 LGEALKQLRQANGWSLTLTAEKTGVSKAMLGQIERGES-SPTIATLWKIATGFNVP 62
                8*************************************.6**********999986 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.2e-11   4.3e-08       3      69 ..     106     173 ..     104     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.2e-11
                 EEEETTEEEEEECSSSEE.EEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   3 velppGesapshrHpged.effyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 vel+p +++ s  H+    e ++VleGe+ l + + + +l++++++ f a + H +rN+ d+ +r+ +
  EHU00825.1 106 VELAPSAQSDSAAHEKGViEQVVVLEGELLLGIADTWRRLKRDEAFQFRADVAHSYRNPLDTRLRFHS 173
                 7899*99999999999989****************************************999999865 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.1e-09   2.2e-05       1      56 [.       9      63 ..       9      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.1e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidl 56
                Ge Lk++R  +g+++   ae++g+s++++ +iE g++  p++ +l kia  ++++ 
  EHU00825.1  9 GEALKQLRQANGWSLTLTAEKTGVSKAMLGQIERGES-SPTIATLWKIATGFNVPF 63
                99*********************************99.**********99888875 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.5e-08   5.4e-05       2      35 ..      12      45 ..      11      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.5e-08
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT-- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddf 35
                L++ R+a g+sl   a++t ++k++l ++E++++
  EHU00825.1 12 LKQLRQANGWSLTLTAEKTGVSKAMLGQIERGES 45
                9******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1346.23
//
Query:       EHU00826.1  [L=185]
Description: nicotinamidase/isochorismatase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-42  144.5   0.1      4e-42  144.3   0.1    1.0  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.1   2.3e-46     4e-42       1     167 [.      10     169 ..      10     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 2.3e-46
  Isochorismatase   1 talvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKt 94 
                      tal+viD+q+++v  + + ++e + v+e+++ l++a+r++++pv++++          + +++   ++ +  ++ a lvp+++p+ +d++v+K+
       EHU00826.1  10 TALIVIDLQEGIV--ALPVVHEPQPVIERCAALAAAFREKDLPVVIVNVAGG-----APGRAESPRHQGELPANWATLVPAMTPQHNDITVTKH 96 
                      8************..*************************************.....999999******************************* PP

  Isochorismatase  95 rfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqaf 167
                      +++af++t l+++L+++gi+++v++Giat+++Ve+tar+a++lGy+v+++ DA+ +l+ ++h+++++r++++ 
       EHU00826.1  97 TWGAFNQTTLHDQLQKRGITQVVICGIATSIGVESTARQAYELGYNVTLAVDAMTDLNSDTHENSIERIFPRL 169
                      ********************************************************************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1578.14
//
Query:       EHU00827.1  [L=45]
Description: hypothetical protein CKS_3582 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 390.72
//
Query:       EHU00828.1  [L=83]
Description: hypothetical protein CKS_3583 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.8   0.0      0.032   14.7   0.0    1.1  1  PIN       PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.8e-06     0.032      28      74 ..      14      57 ..       6      79 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-06
                SSEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHH.HHTSEEEEBC CS
         PIN 28 leelvtsalvlaEllyvlarrkskrekaaelvellll.lsalkilpid 74
                +++ ++sa+++ E+++++ar      +++ + +++l+ + ++++l + 
  EHU00828.1 14 ADRTFISAVTWLETRRGIAR----LARRDSEQAQRLRhAYQTQVLAVY 57
                37889***************....444444444444445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 733.25
//
Query:       EHU00829.1  [L=55]
Description: PTS system lactose/cellobiose-specific IIB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 502.19
//
Query:       EHU00830.1  [L=455]
Description: putative sugar-specific permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-122  409.1  39.9   2.1e-122  409.1  39.9    1.4  2  EIIC-GAT  PTS system sugar-specific permease component


Domain annotation for each model (and alignments):
>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.1  39.9  1.2e-126  2.1e-122       2     396 .]      12     406 ..      11     406 .. 0.98
   2 ?   -2.9   0.0      0.15   2.7e+03     143     158 ..     424     439 ..     411     450 .. 0.48

  Alignments for each domain:
  == domain 1  score: 409.1 bits;  conditional E-value: 1.2e-126
    EIIC-GAT   2 ilggpaillglivligllllkkklskaikgtlkaiiGflilslgagllvsslkpvaeafseafglkidvvwpneaivalassqelgsevalilllgliv 100
                 +lg+++il+++i+ligl+l+kk+++k+++gt+k+ +Gfli+ +g++++v++l+ + + f++ fg+ ++ +   +ai++la   elgseva++ll+++iv
  EHU00830.1  12 LLGQASILIAFIALIGLVLQKKSAGKVVEGTFKTLLGFLIMMAGINIIVGALTFLNSIFTHGFGM-QGYITDVAAIAGLANR-ELGSEVAMTLLVIFIV 108
                 799**************************************************************.8**************6.99************** PP

    EIIC-GAT 101 niilarfkktttlkyifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqtlgyalaalvgklfgkk 199
                 nii+ar+++   +kyifltg+ +l++a++ av+ y +g++++ l+++g+++ g++ +v+pal+q+++r+it++d+valgh+ t+gy+l a+v+k++gk 
  EHU00830.1 109 NIIIARLTP---FKYIFLTGQALLWMATIGAVIGYKAGLTGLPLILTGGIFGGVMAVVMPALAQPVVRRITDSDDVALGHFCTIGYLLTAAVAKVVGKG 204
                 *********...*************************************************************************************** PP

    EIIC-GAT 200 ekstekiklpkklgflrdnivagailmlilfllaaliagkel....sggknfvvqiltqaltfaaglviilkgvrmfveelvpafkgiseklvpgavpA 294
                 ++ste++klp++++fl+d++ ++a++m+ ++l+ al+ag ++    s+g+n+++++++qa++f+ag++++ +gvr++++elvpaf+gi+ +lvp+a+pA
  EHU00830.1 205 SRSTEDLKLPDNFKFLQDTYLSMAVVMVPMYLIPALAAGLAFiaqySSGTNYLMYAFMQAIQFVAGVFVLYSGVRLLLNELVPAFRGIAMRLVPDAKPA 303
                 *************************************855555555999************************************************** PP

    EIIC-GAT 295 lDvavvfgfapnavtiGfllsfigqllallilillgaaiilPgvlplfflgatagvfanavggikgaiigsfisGllilflpalllpllgelgmagvtf 393
                 lD++v+f++apnav++Gfl +++g ++++l+++++g+a+ilPg+l+ ff g+tagvf+na gg++ga+ig+f++Gl+i+flpa+l+p+l + g++gvtf
  EHU00830.1 304 LDCPVMFPYAPNAVIVGFLATTLGSVVGMLVFPMFGLAMILPGLLTNFFAGGTAGVFGNALGGRRGAMIGCFLHGLFITFLPAILVPMLESYGFTGVTF 402
                 *************************************************************************************************** PP

    EIIC-GAT 394 .dad 396
                  d+d
  EHU00830.1 403 sDSD 406
                 9987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.15
    EIIC-GAT 143 alviigslllglywlv 158
                  +++++++++++ w v
  EHU00830.1 424 FVAVFVAFVTAIAWFV 439
                 2233333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3920.45
//
Query:       EHU00831.1  [L=280]
Description: ketose-bisphosphate aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-88  295.8   0.7    3.7e-88  295.6   0.7    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
      0.021   14.3   0.1      0.043   13.3   0.1    1.4  1  His_biosynth   Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.6   0.7   4.1e-92   3.7e-88       3     275 ..       6     279 ..       4     280 .] 0.94

  Alignments for each domain:
  == domain 1  score: 295.6 bits;  conditional E-value: 4.1e-92
                    HHHHHHHHHHHT-.-EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHH CS
  F_bP_aldolase   3 lkellkkAkeegy.avgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaie 97 
                     ++llk Ake+++ avg fn + le++ a+++aae+++sP+++q+s+g+a++   g+e+l++ v+++a+   + ++  +lhlDH+++le ++ ai+
     EHU00831.1   6 FTDLLKIAKERNFkAVGSFNLHCLEMLPAFFKAAEQTHSPLMIQISTGTAKYL--GHELLVDAVKSLAK---SKNISTCLHLDHCSDLEAIQTAIN 96 
                    6799******9988************************************766..8*************...669********************* PP

                    HS-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------..TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS..--T CS
  F_bP_aldolase  98 agfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv..vaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpkpkLdf 191
                    agfsSvM+DgS+lpleeNia+t++v+++a++l+vsvEaElG igg+edg   + +e  +T +e+a +fv+etgvd+lA++iG+vHG y+ k++++ 
     EHU00831.1  97 AGFSSVMYDGSHLPLEENIANTRRVIDMARPLNVSVEAELGAIGGSEDGKcvEMDEIAFTPVEDARRFVHETGVDMLAISIGTVHGLYTGKAHIQH 192
                    ***********************************************99854445559*********************************99*** PP

                    HHHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHG.GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHT CS
  F_bP_aldolase 192 erlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkke.kenkk.ydprkllkeaeeamkevvkekiell 275
                    +rl++i++a+ +plVlHGg+gv+de++r a+++G+ K+N+ t+++ ++++++k++ ++ k   + r++l +a +a+++v+ ek++l+
     EHU00831.1 193 QRLAAITDATaTPLVLHGGTGVSDEDMRLAVSSGIDKVNVGTEMNVQWVAQCKNTfEKGKVnDSVRNFLVPANNAVTNVLVEKMQLF 279
                    ****************************************************9996333444677899*****************98 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.7e-06     0.043      26     119 ..     152     248 ..     141     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.7e-06
                   EETTSHHHHHHHH.HHHT-SEEEEE..EHHHHCTTH.HHHHHHHHHHHHH-SSEEEEESS..SSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHH CS
  His_biosynth  26 ryagdpvelakry.eeegadelhvv..Dldaakegr.eanldlveeiaeevfipvqvGGG..Irsledveelleagadkviigtaavknpelikela 116
                   ++a  pve a+r+ +e+g+d+l +    + +  +g+  ++++ +++i++++  p+ + GG  +++ ed++ ++++g+dkv +gt++  n +++ ++ 
    EHU00831.1 152 EIAFTPVEDARRFvHETGVDMLAISigTVHGLYTGKaHIQHQRLAAITDATATPLVLHGGtgVSD-EDMRLAVSSGIDKVNVGTEM--NVQWVAQCK 245
                   5667899999999668899987754226777775551567789999****999999988854666.55****************96..455555555 PP

                   HHH CS
  His_biosynth 117 ekf 119
                   + f
    EHU00831.1 246 NTF 248
                   555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2111.10
//
Query:       EHU00832.1  [L=89]
Description: hypothetical protein CKS_3589 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0075   16.5   1.5      0.016   15.4   1.3    1.8  1  Ribosomal_S15   Ribosomal protein S15
  ------ inclusion threshold ------
      0.059   13.6   2.1       0.11   12.8   2.1    1.4  1  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_
      0.072   13.3   0.8      0.088   13.0   0.8    1.1  1  Fib_alpha       Fibrinogen alpha/beta chain family
       0.11   12.4   0.1       0.16   12.0   0.1    1.3  1  UspB            Universal stress protein B (UspB)


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.3   3.5e-06     0.016       6      55 ..       7      56 ..       4      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.5e-06
                   HHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHH CS
  Ribosomal_S15  6 kefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvsk 55
                   k+++ h++D  +    +  ++e+I++l+ +l +n  D +++++L++  ++
     EHU00832.1  7 KKVENHPQDAAERDRLAESVSEKIRQLEAMLASNTADTDTQKQLMLEYNR 56
                   7899999999999999999************************9876554 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.1   2.4e-05      0.11       2      45 ..      15      57 ..      14      60 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
  Plasmid_RAQPRD  2 daaEreeLakll.kqLdqlqalveraeaqakqeekaRvhfdYdrl 45
                    daaEr++La+ + +++ ql+a+++   a  +++  + + ++Y+r+
      EHU00832.1 15 DAAERDRLAESVsEKIRQLEAMLASNTADTDTQ--KQLMLEYNRA 57
                    89******9866157********8777777666..7899999997 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8     2e-05     0.088      34     113 ..       6      87 ..       4      89 .] 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HCCCHHHHHHHCCHHHHHHHHHHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskele..eeilrlketidaqesnirvLqnvles 113
                 kk++e+  ++ +e  +  ++++e +++++ +l+++ + ++ +++++ ++++ l    +  r+++ id  + +i +L+n++++
  EHU00832.1   6 KKKVENHPQDAAERDRLAESVSEKIRQLEAMLASNTADTDTQKQLMLEYNRALSlyAKSRRYRDHIDPLFVKIDELRNLVRK 87 
                 566666666777777888999999*************999999999999998763367889*****************9987 PP

>> UspB  Universal stress protein B (UspB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.6e-05      0.16      52      87 ..      42      82 ..      30      87 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
        UspB 52 thgqlskqvrl......lryiksreyldhhdpevilkcervr 87
                ++++++kq+ l        y ksr+y+dh dp ++ k + +r
  EHU00832.1 42 ADTDTQKQLMLeynralSLYAKSRRYRDHIDPLFV-KIDELR 82
                55666666643211111679************998.455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1239  (0.0691059); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 676.34
//
Query:       EHU00833.1  [L=145]
Description: PTS system 3-keto-L-gulonate/L-ascorbate-specific IIA component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-25   87.2   0.0    1.1e-24   87.0   0.0    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0     6e-29   1.1e-24       4     141 ..       9     145 .]       6     145 .] 0.96

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 6e-29
                 HCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTE..TCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEE CS
  PTS_EIIA_2   4 tkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgig..ngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklifll 99 
                 + + i++ + a++++++i+ +a++l++ g++  +  y +a++ +  + + +++  +g+AiPHar+e+ v ++ ++++ l ep+ fe    +++++++++
  EHU00833.1   9 EANAIQVGVAASDWQQVIAMAAKPLVAGGYIRAS--YPQAVIDNTLTHGAYYVfeEGIAIPHARPETgVIRDCFSLIVLAEPISFE--GSEKADIVIMF 103
                 5689999*************************99..****************777**********988******************..5689******* PP

                 E-SSCHH.HHH.HHHHHHHHHCSCCHHHHHHC--SHHHHHHHH CS
  PTS_EIIA_2 100 alpekdaehlk.ilaqLaellkdeefvekLrkakseeeilell 141
                  + +++a h++  + +++ ll+d+  + kLr+a+s ++++e+l
  EHU00833.1 104 GARNSNA-HIEeGIRAIVSLLDDDATLVKLRQASSVADVMEIL 145
                 *******.***9****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1191.59
//
Query:       EHU00834.1  [L=213]
Description: glucokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0004   20.6   0.0     0.0017   18.5   0.0    2.0  1  AAA_33      AAA domain
    0.00043   20.8   0.1     0.0051   17.4   0.1    2.2  1  AAA_18      AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.018   15.3   0.0    1.3  1  Hydin_ADK   Hydin Adenylate kinase-like domain
      0.012   15.4   0.0      0.043   13.7   0.0    1.9  2  CPT         Chloramphenicol phosphotransferase-like protein
      0.048   12.9   0.0      0.088   12.1   0.0    1.4  1  Zeta_toxin  Zeta toxin
      0.061   13.7   0.1      0.091   13.1   0.1    1.7  1  AAA_16      AAA ATPase domain
       0.11   11.9   0.0       0.18   11.2   0.0    1.3  1  KTI12       Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.7e-07    0.0017       1     121 [.      10     130 ..      10     150 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.7e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg....tdqqsktdytrvldrlyqilnelarkalsagrnvil..datnlsrrerarflklar 93 
                 +vl+ G p+sGKstl + l  + +  +l+ d++++         d+q+     ++   +yq + +++    ++  n+++  da  +  +  + + + ++
  EHU00834.1  10 VVLVNGIPASGKSTLTRMLSGRFTLPILTLDSIKEPFMSsfapVDRQRN---RQLGCAAYQAIWNIV---GQSPVNTVFliDAW-FGFQSKSVLEQGLQ 101
                 89**********************9999999988855442322222222...224444555554444...44444433333443.33344456666677 PP

      AAA_33  94 rlgvpvri.vvvetdeetlkeRlakRaan 121
                 r+gv + + ++++ +++++ +R ++R a+
  EHU00834.1 102 RAGVDEVLeIWMQISPDEAVARYQARLAQ 130
                 77776555588888888888888888765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1     2e-06    0.0051       1      22 [.      11      32 ..      11     135 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                +l++G+p++GK+tl++ Ls r 
  EHU00834.1 11 VLVNGIPASGKSTLTRMLSGRF 32
                79****************9885 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   6.9e-06     0.018       1      53 [.      10      62 ..      10      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.9e-06
   Hydin_ADK  1 aiivhGaPlsGKtatavtLakkYeaAlltiDsvvleAisdgnssaGlrArelC 53
                +++v+G P sGK++ +  L+ ++   +lt+Ds+    +s+       r r+l 
  EHU00834.1 10 VVLVNGIPASGKSTLTRMLSGRFTLPILTLDSIKEPFMSSFAPVDRQRNRQLG 62
                589******************************98888888888888888874 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.043       2      33 ..       9      40 ..       8      71 .. 0.84
   2 ?   -1.2   0.0      0.59   1.5e+03      24      46 ..     107     129 ..      91     173 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEE CS
         CPT  2 riilLnGgsssGKsslaralqevldepwlhlg 33
                r++l nG + sGKs+l+r l   +  p l l 
  EHU00834.1  9 RVVLVNGIPASGKSTLTRMLSGRFTLPILTLD 40
                79******************988888877764 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.59
                 HSSS-EEEEEHHHHHHHS-GGGG CS
         CPT  24 vldepwlhlgvDafvealppkrq 46 
                  + e w+++  D+ v++ +++  
  EHU00834.1 107 EVLEIWMQISPDEAVARYQARLA 129
                 44566777777776666554443 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.4e-05     0.088      12      40 ..       3      32 ..       1      45 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
  Zeta_toxin 12 sq.erPklillgGqpGAGKselaellkdel 40
                +q e++ ++l+ G p++GKs+l ++l  ++
  EHU00834.1  3 RQaESKRVVLVNGIPASGKSTLTRMLSGRF 32
                4449999******************98877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.6e-05     0.091      23      51 ..       7      35 ..       1     199 [. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
      AAA_16 23 rpelvllsGesGvGKsslvrellralekd 51
                + ++vl+ G +++GKs+l r+l  +++  
  EHU00834.1  7 SKRVVLVNGIPASGKSTLTRMLSGRFTLP 35
                3499****************998766655 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     7e-05      0.18       4      26 ..      11      33 ..       9      49 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7e-05
                EEEE--TTSSHHHHHHHHHHHHH CS
       KTI12  4 vvltGlPssGKstrakeLakale 26
                v++ G+P+sGKst+++ L+  ++
  EHU00834.1 11 VLVNGIPASGKSTLTRMLSGRFT 33
                899*************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1583.50
//
Query:       EHU00835.1  [L=117]
Description: hypothetical protein CKS_3593 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-20   72.8   1.9    6.3e-20   72.6   1.9    1.0  1  DUF393    Protein of unknown function, DUF393


Domain annotation for each model (and alignments):
>> DUF393  Protein of unknown function, DUF393
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   1.9   3.5e-24   6.3e-20      14     113 .]       1      97 [.       1      97 [. 0.98

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 3.5e-24
      DUF393  14 vqflerrdrkgrirfadlqsasgkallkelgidaeqldslllvieagrvysgsdAaleiaralpglwrllalllvlprlkklrdalYrliarnRyrlfg 112
                 ++fl r+  ++++rfa++qs++gkall+ +g++ ++++++++ i++++ + +++A++++ ++lp +wr++++l++lp+   l + +Y+ ia nRyrlfg
  EHU00835.1   1 MRFLLRHRLARQVRFASVQSEEGKALLRWAGLPDDNISTIVY-IRDEQHWLRAQAIFRVFQQLPLPWRIMSVLRWLPKR--LSNLFYDAIALNRYRLFG 96 
                 689999999*********************************.89999*******************************..*****************9 PP

      DUF393 113 r 113
                 r
  EHU00835.1  97 R 97 
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1045.02
//
Query:       EHU00836.1  [L=135]
Description: hypothetical protein CKS_3594 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0068   14.1   0.3     0.0068   14.1   0.3    1.3  2  Med23       Mediator complex subunit 23
  ------ inclusion threshold ------
       0.02   15.3   6.8      0.054   13.9   6.8    1.7  1  DUF2231     Predicted membrane protein (DUF2231)
        4.4    5.8   6.3        5.3    5.6   6.3    1.1  1  Strabismus  Strabismus protein


Domain annotation for each model (and alignments):
>> Med23  Mediator complex subunit 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   1.1e-06    0.0068    1116    1155 ..      25      64 ..       4      70 .. 0.86
   2 ?   -4.0   0.0      0.33     2e+03    1135    1150 ..      78      92 ..      74      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-06
       Med23 1116 evvanalldvvlkgyklipsneieswinaiglvltaLPea 1155
                    va+ l d+v ++ ++i ++   sw+ aiglv++ LP  
  EHU00836.1   25 FFVAAWLFDIVYMKTTVIFWSVSASWLIAIGLVIAVLPRV 64  
                  568999********************************86 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.33
       Med23 1135 sneieswinaiglvlt 1150
                    + ++wi++++++l+
  EHU00836.1   78 E-KTHFWISLVAILLA 92  
                  3.4599******9997 PP

>> DUF2231  Predicted membrane protein (DUF2231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   6.8   9.1e-06     0.054       2      90 ..      45     124 ..      43     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.1e-06
     DUF2231   2 aevglwnlvaalvigflaalaGlvelllaepsirakktallHavggvlllalivaltvWrfvlrlreeeqvsplylalslvvvvlllvq 90 
                    + w+++++lvi++l  ++ l+ l+       +     +H+ + +++++l++a    + ++++r+  +v p+ ++ls++vv+lll++
  EHU00836.1  45 SVSASWLIAIGLVIAVLPRVISLIYLFRG-----SSAPEKTHFWISLVAILLAIA----NAFIHSRDAYAVVPTAVILSTLVVILLLLA 124
                 55678999999999999999998877777.....33444579999**********....***********************9999875 PP

>> Strabismus  Strabismus protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.3   0.00088       5.3      89     177 ..      36     126 ..      28     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00088
  Strabismus  89 ylgtalaavlsllafls..PlafvvlPklewkeqlekCgaeCeGllislafklliLliaswalFlRkpratlPriflfRalvlvlvllltl 177
                 y++t++ +    +++l    l++ vlP++ +   l + + + e +   +++  ++L+ia   +  R + a +P  +++ +lv++l+ll  +
  EHU00836.1  36 YMKTTVIFWSVSASWLIaiGLVIAVLPRVISLIYLFRGSSAPEKTHFWISLVAILLAIANAFIHSRDAYAVVPTAVILSTLVVILLLLANV 126
                 66666555444444444014566789**999999998888888888888888999******************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 1243.19
//
Query:       EHU00837.1  [L=433]
Description: L-sorbosone dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-18   64.7   0.1    5.9e-16   58.7   0.1    2.8  1  GSDH      Glucose / Sorbosone dehydrogenase
     0.0002   21.2   1.8       0.34   11.0   0.0    3.0  3  NHL       NHL repeat


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   6.6e-20   5.9e-16       1     276 [.      78     357 ..      78     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 6.6e-20
                 -S-EEEEEE-TTS-EEEEETTTEEEEEE.TTEE.EEEEE-..--.--STT-SEEEEE....E-TTTTTS-EEEEEEEE-.........TTSSEEEEEEE CS
        GSDH   1 lehPwslaflpdgrlLvtersGrlrlvkadgklkepiagvp.ev.vakgqgGlldva....lhpdfaenrlvYltyaea......eeekggagtavara 87 
                 l+hP ++ +lp++++Lv+e +G+ + +++  +l   i+g+  +   + g+gG   ++    ++ +++++r +    a        ++   ++ + ++++
  EHU00837.1  78 LQHPRQVYVLPNNDILVAESNGTPKPTTKPKEL---ITGLVkNAsGKGGKGG-NRITllrnVNGKWEQHRFIENLTAPFgmqlvgNTLYVANADSLVKF 172
                 689999999999999999999999999855555...6666422202333333.2333111144566666666555554444444334444566677777 PP

                 EE-SS..-EEEEEEEEEEE---TT-------EEE-TTS.-EEEE---TT-.GGGGG-TT-SSSEEEEE-TTSSB-TT-TTTT-TTS-TTEEEE--SCE- CS
        GSDH  88 rlsedeaaledlevifrqepkvesgahfGsrlafgpdg.tLfvtvGdrsk.reeaqdlsselGkilrlnkdGsvpadnpfvgkagakpeiwsyGhRnpq 184
                   se +++++   + +++ p    ++h    l  +pdg +L+v+vG +s+ +e+    +     +l +             ++a+ +++i+++G Rnp 
  EHU00837.1 173 PYSEGQTEIRTAPEEVTELPGGPINHHWTKALLASPDGsKLYVGVGSNSNiTENGIGAEYRRAAVLEV-------------DAASGASRIYASGLRNPT 258
                 777778888888888889999999**************99******9887444444444444444443.............34456789********** PP

                 --EE-TTT--EEEE.....EE--SSS.EEEEEE-TT-B--TTT-S......S-......-S-TTS---SEEETT---EEEEEEE........TTEEEEE CS
        GSDH 185 GlaldpdtgeLwes.....EhGprgg.DelnlieaGknYGWplvsygeeYsgkkiges.etreglekpvlvwtpsiapsglafytgdafpewkgdllvg 276
                 Gl ++p+t++Lw++     E G+    D l  +++ + YGWp   +g++ + ++ ++  +  +   kp +  ++ +ap gl+fy  +++p+++g ++++
  EHU00837.1 259 GLDWEPQTKQLWAVvnerdEIGSDLVpDYLTSVKEKGFYGWPYSYFGQHVDVRAQPQRpDLVKTAIKPDYALSSHVAPLGLLFYGAENMPQYRGGAFIS 357
                 ************8544333556554369**********************9886665546677788999999999*********************996 PP

>> NHL  NHL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   3.8e-05      0.34       1      21 [.      78      98 ..      78      99 .. 0.92
   2 ?   -3.1   0.1       1.2     1e+04      12      19 ..     158     165 ..     157     167 .. 0.82
   3 !    8.5   0.1   0.00023       2.1       4      19 ..     405     420 ..     403     424 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
                BSSEEEEEEETTTEEEEEECC CS
         NHL  1 fnyPhGvavdsnGdiyVaDse 21
                +++P+ v v++n+di+Va+s+
  EHU00837.1 78 LQHPRQVYVLPNNDILVAESN 98
                689***************987 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
                 TTEEEEEE CS
         NHL  12 nGdiyVaD 19 
                 ++ +yVa+
  EHU00837.1 158 GNTLYVAN 165
                 6889**97 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00023
                 EEEEEEETTTEEEEEE CS
         NHL   4 PhGvavdsnGdiyVaD 19 
                 P G+a d++G +++aD
  EHU00837.1 405 PVGLASDKQGGLIIAD 420
                 9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3585.70
//
Query:       EHU00838.1  [L=209]
Description: putative acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-16   57.5   7.4    1.5e-09   37.2   5.4    3.5  4  Hexapep     Bacterial transferase hexapeptide (six repeats)
    9.1e-08   31.7   3.8    9.1e-08   31.7   3.8    2.5  3  Hexapep_2   Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
      0.032   13.9   0.2      0.059   13.0   0.2    1.4  1  FAS_I_H     Fatty acid synthase type I helical domain
      0.046   12.6   0.0      0.079   11.9   0.0    1.4  1  Fucokinase  L-fucokinase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     1e-05     0.045       2      29 ..      25      57 ..      24      59 .. 0.93
   2 !    5.4   0.0    0.0035        16       8      23 ..      59      74 ..      57      75 .. 0.73
   3 !   37.2   5.4   3.3e-13   1.5e-09       2      36 .]     114     148 ..     113     148 .. 0.96
   4 ?   -3.2   0.1       1.9   8.3e+03      29      36 .]     151     158 ..     150     158 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
                EEEETTEEE-T.....TEEEETTEEE-TTEEEE CS
     Hexapep  2 tvIGsnvlIgp.....faviggnVkIGdnvkIg 29
                t+IG  + I +     ++++g+   +G++++I+
  EHU00838.1 25 TQIGAQCEILAhsyleYSTLGDFSYVGEHCCIA 57
                79*****************************97 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0035
                EEE-TTEEEETTEEE- CS
     Hexapep  8 vlIgpfaviggnVkIG 23
                + Ig f+ i++ V IG
  EHU00838.1 59 SEIGRFTAIANQVRIG 74
                5688888888888888 PP

  == domain 3  score: 37.2 bits;  conditional E-value: 3.3e-13
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 ++IG++v+Ig++++++++V++Gd+++++ag+v+++
  EHU00838.1 114 VIIGNDVWIGHGVIVLPGVTVGDGAVLAAGAVVTK 148
                 79*******************************86 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.9
                 ETTEEEES CS
     Hexapep  29 gagvvigg 36 
                 +a++v+gg
  EHU00838.1 151 AAYTVVGG 158
                 56666654 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.47   2.1e+03      10      16 ..      27      33 ..      24      37 .. 0.66
   2 ?   -1.1   0.4      0.37   1.7e+03       4      19 ..      50      66 ..      48      75 .. 0.56
   3 !   31.7   3.8     2e-11   9.1e-08       2      34 .]     114     148 ..     113     148 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
                E-TT-EE CS
   Hexapep_2 10 iGanagi 16
                iGa ++i
  EHU00838.1 27 IGAQCEI 33
                5665554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.37
                E-TT-EE-TT-EES..EE CS
   Hexapep_2  4 IGdnCliGanagiG..vs 19
                +G+ C i a+++iG  + 
  EHU00838.1 50 VGEHCCI-ADSEIGrfTA 66
                6777766.5666664444 PP

  == domain 3  score: 31.7 bits;  conditional E-value: 2e-11
                 EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdncvvgaGvvita 34 
                 viIG+++ iG   ++  Gv++Gd++v++aG v+t+
  EHU00838.1 114 VIIGNDVWIGHGVIVlpGVTVGDGAVLAAGAVVTK 148
                 9*************99******************7 PP

>> FAS_I_H  Fatty acid synthase type I helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.3e-05     0.059      73      95 ..     180     202 ..     164     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
     FAS_I_H  73 SaWNwarqdilklyydllqgrlk 95 
                 ++WNw+r+ i++ ++d++++  +
  EHU00838.1 180 AWWNWTREKIMANLADFQSEDIE 202
                 7***************9998766 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05     0.079     265     319 ..      11      65 ..       2      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
  Fucokinase 265 nkkekkkesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelesse 319
                  +++++++s+ + ++++  ++++ ++s++e+s+l++   +g+++ + + e+ + +
  EHU00838.1  11 LQQTEIDASVRMRETQIGAQCEILAHSYLEYSTLGDFSYVGEHCCIADSEIGRFT 65 
                 4556668999999**********************9999*******999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1592.41
//
Query:       EHU00839.1  [L=488]
Description: catalase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     4e-186  618.7   0.3     5e-186  618.4   0.3    1.1  1  Catalase      Catalase
    1.4e-13   50.8   0.0    2.5e-13   50.0   0.0    1.4  1  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  618.4   0.3  5.6e-190    5e-186       1     381 [.      10     387 ..      10     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 618.4 bits;  conditional E-value: 5.6e-190
                 B-TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSS CS
    Catalase   1 ttseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadta 99 
                 tt++G+pv+++++sl++g++Gpl+l+d++lie++a+f+reripeR  hAkG+ga+g Fevt+d+s++tka++++  g+kt+vl+RfStvage+gs+dt+
  EHU00839.1  10 TTDAGIPVASDEHSLSVGPDGPLVLHDHYLIEQMANFNRERIPERQPHAKGSGAFGFFEVTEDVSRYTKANVFQP-GTKTDVLMRFSTVAGERGSPDTW 107
                 899**********************************************************************86.*********************** PP

                 SS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE-T CS
    Catalase 100 RdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlkdaamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklvnk 198
                 Rd+rGf++kfyT+eGn+DlvgnntpvFfirDp+kf+++i+sqkr++++nl+d++m+wdf++l+pes hqv++l++drgipks+rhmngy++ht+ +vn+
  EHU00839.1 108 RDPRGFSIKFYTREGNYDLVGNNTPVFFIRDPMKFQHFIRSQKRRADNNLRDNDMQWDFWTLSPESSHQVTWLMGDRGIPKSWRHMNGYSSHTYMWVNA 206
                 *************************************************************************************************** PP

                 T--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE--S- CS
    Catalase 199 egevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnrnpen 297
                 +ge ++vk+hf+t+qg++nlt++ea+klaged dy+trdL+ +i++g++p+w+ly+q+m+ +ea+++r+n++DlTkvwp++++pl++vGkltLnrnp++
  EHU00839.1 207 QGEKFWVKYHFHTDQGIENLTQQEADKLAGEDGDYHTRDLFMSIKNGHFPSWTLYMQIMPFAEADEYRYNPFDLTKVWPHSDYPLIKVGKLTLNRNPTD 305
                 *************************************************************************************************** PP

                 HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..---S----TT-.....S-S---SS-S- CS
    Catalase 298 yFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepnsl 381
                  +a++Eq+af+p+nlvpGi+ s+Dk+L gR+f+Yad++r RlGvny+q+pvN+p+ +v++y++dGamr+  n  ++p Y+pns 
  EHU00839.1 306 NHAQIEQAAFEPNNLVPGIGLSPDKMLLGRVFAYADAHRARLGVNYKQIPVNAPQSPVNSYSKDGAMRI--NPVSDPVYAPNSK 387
                 ********************************************************************5..89999******95 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   2.8e-17   2.5e-13       3      65 .]     419     481 ..     417     481 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.8e-17
                   GG--SSHHHHHHHH.HS-HHHHHHHHHHHHHHH.TTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   3 dfddhfsQagllyr.smseeekerlvnniafel.skvedeeiqerqlehfakvDpdlgqrVaeal 65 
                   d dd+  Qa +l + +m++++++rlvnn+++ l ++ve e + +r++++++++D+++g r+a+a+
    EHU00839.1 419 D-DDDVGQANTLINkVMDDAARDRLVNNVTGLLlNGVE-EPVLSRAFAYWRNIDKTIGDRIATAV 481
                   4.8*****************************966676.***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3615.45
//
Query:       EHU00840.1  [L=343]
Description: Zn-dependent NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-42  143.9   0.0    3.4e-42  142.7   0.0    1.6  2  ADH_N_2       N-terminal domain of oxidoreductase
    6.6e-19   68.2   0.0    1.1e-18   67.4   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.6e-11   44.7   0.0    4.3e-11   44.0   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   5.7e-46   3.4e-42       2     106 ..      10     114 ..       9     116 .. 0.98
   2 ?   -3.1   0.0       1.2   7.2e+03      24      35 ..     143     154 ..     142     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 5.7e-46
     ADH_N_2   2 qwvlkkrpegaptesdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyavs 100
                  w+l++rp+g+pte++f+++ +++pe+kdGe+l+r+ ylS+DPymRgrm++ ksy++p el+++m+gg+v++V eSkn++fk+Gd+V+ ++gwq+yavs
  EHU00840.1  10 AWLLASRPKGEPTEDNFRYVAQPTPEIKDGEILLRTIYLSLDPYMRGRMDEGKSYAPPAELDKPMVGGTVCQVAESKNSEFKAGDWVLCQSGWQEYAVS 108
                 7************************************************************************************************** PP

     ADH_N_2 101 dgkgle 106
                 dgk++ 
  EHU00840.1 109 DGKDVA 114
                 **9986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
     ADH_N_2  24 elpelkdGevlv 35 
                 ++ ++k+Ge lv
  EHU00840.1 143 DIGQPKEGETLV 154
                 578999***998 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   1.9e-22   1.1e-18       1     126 [.     161     297 ..     161     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 1.9e-22
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgeee 96 
                 +vG  + ql k+ G++v++v++ eek++ a + lG d++i++++ d++e++k ++ ++g+d++fe vG g++++a + ll+p  r+ v+G+   + ++e
  EHU00840.1 161 PVGATVGQLGKMKGCRVVGVAGGEEKCRHAVEnLGFDACIDHHSQDFEEQLKNAC-PDGIDIYFENVG-GKVFDAVFPLLNPAARVPVCGLfsAYSQKE 257
                 79*************************998888*********555**********.99**********.**********************87444444 PP

                 EEHHH.........HHHTT-EEEEE-SSC.HHHHHHHHHH CS
  ADH_zinc_N  97 fdlrn.........lllkeksilGsllgs.lreefkeald 126
                 +++++         +l ++++++G++  + + ++++e+l+
  EHU00840.1 258 LPPGPdrtsrimagILTRRIRMQGFIIFQdYGHRYPEFLK 297
                 4444455555555699********9988867788887766 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.3e-15   4.3e-11       1     133 []     194     339 ..     194     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 7.3e-15
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEE.EE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-........ CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrl.vsig.gpplsaallkpakkrkgrsvkyeflfsmkas........ 84 
                   lG+d +id++++dfe   + ++++g+D+ +++vgg+ + +a++ +l++ +r+ v+ g  +  s++ l+p  +r +r     +   ++++        
    EHU00840.1 194 LGFDACIDHHSQDFEeqlKNACPDGIDIYFENVGGKVF-DAVFPLLNPAARVpVC-GlFSAYSQKELPPGPDRTSRIMAGILTRRIRMQgfiifqdy 288
                   8**************99988899***************.*******776999544.43555555556665656555555555554444466777778 PP

                   ...-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 ..aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                     +  + l++++ l++++k++ +     +le++++A+ ++ +g+ +GK V+
    EHU00840.1 289 ghRYPEFLKAMTPLVASKKIHYREHMIDGLENTPKAFIDMLNGKNFGKTVV 339
                   9989999******************99***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2550.83
//
Query:       EHU00841.1  [L=264]
Description: FAD dependent oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-17   64.3   0.8    1.8e-17   64.0   0.8    1.0  1  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.066   12.3   0.3       0.11   11.5   0.0    1.4  2  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.8     2e-21   1.8e-17     114     351 ..      10     244 ..       2     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 2e-21
                 EEEEHHHHHHHSTT.ST.TTS.EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 114 elldaeevrelepa.lp.gll.galfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.ll 207
                 +l++++ v e++p+  p  l+  a+ +p++g+v   +l+a l ++++a+G+e++e++   ++   +g+++g+ r ++ g +  ad v +a+G w+   +
  EHU00841.1  10 RLVNPRTVHEVDPQvNPsALAsVAIANPGEGWVSLPHLAAKLVEDFKAAGGEVIEQAGKASVLTAGGRATGI-RSAKrGDIM-ADRVLVACGSWTPdVV 106
                 7899988******9744555657799******************************888887667899****.555558764.599*********9666 PP

                 HTTCTT..TSEE.EEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE.....EETTCSSTSCSHHHHHHHHHHHHHHSGG CS
         DAO 208 gllkel..dlpi.spvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad.....eesgdddpevdeedidellealrklfPq 298
                     +l  ++p  spv   v ++   +e    +         + +     ++p + gr+l+  ++        ++d++ ++d + i++l+  + +l+ +
  EHU00841.1 107 ---APLgvRIPNgSPVSMLVTTT--AQERD-LN--------VVLNTPRAAIRPNP-GRTLAVDHDWyeediVAHADGQYSIDHAVIRQLMADAGHLLGD 190
                 ...44433335325555555555..33321.22........55556666788876.777765554355554334555589*****************99 PP

                 GCGEEE.EEE.EEEEET.TSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 299 lgdvlr.kwa.Glrplp.dglpligetpgvkglylatGhsghGltlapatGkllae 351
                  ++++  +w  Gl p p dg p++ge  +v+g ++a+ h  +G tla+  G+ll+e
  EHU00841.1 191 GAPLEAdSWKiGLKPVPgDGEPVVGELKKVPGCFVAFTH--SGATLALILGELLTE 244
                 8999966********856********879*******999..*************98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.2e-05      0.11     129     204 ..      32     103 ..      14     136 .. 0.82
   2 ?   -2.7   0.0      0.26   2.3e+03      58      91 ..     153     186 ..     141     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.2e-05
                    STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 129 aadarr.etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    +a a+  e +v+ ++l+a lve +++ag ++ e++  +++++ +gr+tG+  +     ++  i a++v++a+g +  
     EHU00841.1  32 VAIANPgEGWVSLPHLAAKLVEDFKAAGGEVIEQAGKASVLTAGGRATGIRSA-----KRGDIMADRVLVACGSWTP 103
                    455556689****************************************9666.....5556889********9976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.26
                    C.CHHHHHHHHHHHHTTT-S..-HHHHHHHHHTHHH CS
  FAD_binding_2  58 ikdspelhrtdtlkaldela..dqplveafveaape 91 
                    + d +++  +d ++ +d+++  d+++++ +++ a++
     EHU00841.1 153 V-D-HDWYEEDIVAHADGQYsiDHAVIRQLMADAGH 186
                    3.5.78888999999988877899999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2041.38
//
Query:       EHU00842.1  [L=78]
Description: hypothetical protein CKS_3600 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 576.16
//
Query:       EHU00843.1  [L=261]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-27   94.9   0.0    7.1e-27   94.7   0.0    1.1  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0     4e-31   7.1e-27       1     192 [.       8     184 ..       8     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 4e-31
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelre 94 
                      ++GgKrkl++++  l+p   ++++vepF+Gg+a+ff   +q k  ++nDin d++nly+ +i+n  ee+ik+++   ++  l ++re f  l++
       EHU00843.1   8 WVGGKRKLAKHLLPLFP--AHTCYVEPFCGGAALFFMK-EQSKAEVLNDINGDIVNLYR-VIQNHLEEFIKQFK---WA--L-TSREMFKWLKD 91 
                      9****************..689*************877.68******************.**************...44..2.589*****997 PP

                      HHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T CS
  MethyltransfD12  95 efnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPPYn 188
                            +++++ ++a++f+yl +l f  + +  + g ++ +   +++   + e+ l+++  +l  ++ie  d ++ +++++  + ++YlDPPY 
       EHU00843.1  92 TPP---ETLTDIQRAARFYYLQKLSFGSKVEGRTFG-TSATSPSRLNI-LRMEETLSEAWMRLHRVAIEHLDWQECMRRYDRTGTLFYLDPPYW 180
                      777...89****************997776655555.77777778888.889999999999********************************9 PP

                      .S.. CS
  MethyltransfD12 189 prqy 192
                       +q 
       EHU00843.1 181 KTQG 184
                      8543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1915.62
//
Query:       EHU00844.1  [L=90]
Description: hypothetical protein CKS_3604 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 719.29
//
Query:       EHU00845.1  [L=130]
Description: hypothetical protein CKS_3605 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   15.2   0.7        1.4    9.3   0.3    2.3  2  PqqD      Coenzyme PQQ synthesis protein D (PqqD)
      0.061   12.9   0.0      0.086   12.4   0.0    1.1  1  DUF4795   Domain of unknown function (DUF4795)


Domain annotation for each model (and alignments):
>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0059        53      35      61 ..      23      51 ..      12      54 .. 0.81
   2 ?    9.3   0.3   0.00016       1.4      33      64 ..      79     111 ..      69     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0059
                HHHH.HHHHC.T--HHHHHHHHHHHHHHH CS
        PqqD 35 ivaa.laeey.dvdeeeaeadvlafldqL 61
                iv+  la++y + ++e a a+  +f+++L
  EHU00845.1 23 IVDGiLAAIYtGPTKEDATAAATDFVNHL 51
                555438899977779***********998 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHC.T--HHHHHHHHHHHHHHHHCT CS
        PqqD  33 eeivaalaeey.dvdeeeaeadvlafldqLrek 64 
                 + i+++la+   d+d++e+e  v+ ++d L+ k
  EHU00845.1  79 QGIAEKLADAViDADKAEVEGQVQTYVDNLQYK 111
                 679*****9999*****************9865 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.6e-06     0.086      77     130 ..      59     122 ..      50     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.6e-06
     DUF4795  77 LatkvsrdqfDeakkeLekmleellekle.........eqeealkkaldtLq..eelkekldrle 130
                 ++t +  d+fD   +++ ++++ + ekl          e+e +++  +d+Lq   ++++  dr++
  EHU00845.1  59 VRTAC-GDNFDRIQSAFAEQAQGIAEKLAdavidadkaEVEGQVQTYVDNLQykHSIDNGQDRIS 122
                 66667.799******************9999999***9**************9888999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1031.59
//
Query:       EHU00846.1  [L=197]
Description: tail fiber assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-26   92.2   0.1      4e-26   91.7   0.1    1.2  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.1   2.2e-30     4e-26       1     129 [.      72     197 .]      72     197 .] 0.97

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2.2e-30
   Caudo_TAP   1 rkqklfstdtlkieydkeggelpesvvevsdineelkiqpkgkflvsdgeglpawvedkkeeqiqqAeqekqqllaqAseqiaplqdavdlgiatdeEk 99 
                 r+q+++s  ++ ++ ++++g+lp+ +v  +         p   ++++dg ++  +++++k++ +++A +++q+ll++A+  +++++++++lg +tde+k
  EHU00846.1  72 RGQTVYSIIDGSPQLITSLGDLPDGTVSTA---------PAERYMKWDGSAWVHDADAEKAAFQDKASAQRQSLLTAANVVTSDWRTELQLGVITDEDK 161
                 789*********************777777.........99********************************************************** PP

   Caudo_TAP 100 aaLlawkkYrvlLnrvDvslapd......ieWPeqP 129
                 a L++w+ Y+++L+++D+sl+ d      i+WP +P
  EHU00846.1 162 AGLIKWMAYIKALKALDFSLVNDeggynaIAWPDKP 197
                 **********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1683.01
//
Query:       EHU00847.1  [L=90]
Description: phage tail fiber repeat protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 738.17
//
Query:       EHU00848.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-07   30.9   0.0    3.5e-07   30.4   0.0    1.3  1  HTH_Tnp_1  Transposase


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     2e-11   3.5e-07      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2e-11
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n  ++Wrr+y++g++a+   
  EHU00848.1  2 QPGVSVAQLARENNINDNLQFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 928.20
//
Query:       EHU00849.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00849.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1063.10
//
Query:       EHU00850.1  [L=525]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-97  325.1   4.2    1.6e-96  323.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    6.9e-17   61.4   0.1    2.8e-16   59.5   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.5e-14   52.9   1.5    1.8  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.085   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
       0.04   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.082   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.2   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.5   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.3   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.8    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.8    7.1   8.7        2.8    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        95     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.1   0.0     2e-99   1.6e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00850.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.1 bits;  conditional E-value: 2e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00850.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00850.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00850.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 472
                   4479***************************************************************************************97 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.1   3.4e-19   2.8e-16       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 3.4e-19
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     S i+T++lNgv+P+a+L++vL +++d +p+++l +LLPW
      EHU00850.1 479 SFIGTCRLNGVEPEAWLRYVLSHIQD-WPVNRLTDLLPW 516
                     89***********************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.5e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00850.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.3e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.3e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00850.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.6e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00850.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4    0.0001     0.085      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.17   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00850.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00850.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.5e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.025        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00850.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00850.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00850.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   4.9e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00850.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00850.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.6e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU00850.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.5e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00850.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.082      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00850.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0    0.0001     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00850.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.4   0.00042      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00042
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU00850.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00043      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.29   2.4e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00850.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00850.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00038      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00850.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00850.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.6   0.2       1.8   1.5e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00850.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00850.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        81      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00850.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00850.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0015       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00850.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0053       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00850.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.8      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU00850.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0034       2.8      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.1   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0034
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU00850.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU00850.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00850.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1468  (0.0818785); expected 358.6 (0.02)
Passed bias filter:                     1036  (0.0577835); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 3840.62
//
Query:       EHU00851.1  [L=75]
Description: oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-09   35.5   0.0    8.3e-09   35.5   0.0    1.0  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.6e-13   8.3e-09      18      89 ..       5      70 ..       1      75 [] 0.85

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.6e-13
                    EEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEE CS
  GFO_IDH_MocA_C 18 wtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvl 89
                    + + +r++ e + rw+++k  ++G+++dlg H +D++  LfG+p +  ++l   ++ ++ a+ +d++   ++
      EHU00851.1  5 ESHFDRFRLEVRQRWREMKGAGSGIWYDLGPHLLDQALQLFGPPVAINVDL---AEMRPGAQTTDYF---HA 70
                    5788899999999999999999**********************9999999...6888888888888...44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 554.49
//
Query:       EHU00852.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-99  332.1   3.5    1.6e-98  329.7   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.03   12.9   6.9      0.056   12.0   6.9    1.5  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.2    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        7.1    7.3   8.7        7.7    7.2   1.0    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  329.7   0.0  1.9e-101   1.6e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU00852.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 329.7 bits;  conditional E-value: 1.9e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00852.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00852.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00852.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00852.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00852.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00852.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00852.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00852.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00852.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00852.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU00852.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00852.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00852.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00852.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU00852.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00852.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00852.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00852.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00852.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU00852.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00852.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00852.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00852.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00852.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00852.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00852.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00852.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU00852.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00852.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00852.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                     1022  (0.0570026); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.40
# Mc/sec: 3887.76
//
Query:       EHU00853.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00853.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 884.36
//
Query:       EHU00854.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00854.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00854.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00854.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00854.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 820.18
//
Query:       EHU00855.1  [L=124]
Description: oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.6   0.2        3.4    8.1   0.1    2.3  2  DUF1330   Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0059   1.1e+02      36      56 ..      52      72 ..      47      73 .. 0.89
   2 ?    8.1   0.1   0.00019       3.4      11      45 ..      72     106 ..      69     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0059
     DUF1330 36 vrggkvevlEGdeeptrlvvi 56
                +r+g+ +++EGd+ ++++v+ 
  EHU00855.1 52 MRDGTLTQVEGDALNEKTVLT 72
                699*********999999985 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00019
     DUF1330  11 tdpeaykeYaalaeaalakyggrflvrggkvevlE 45 
                 t+p +y +Y a++++a++  g++ ++++++ +v+E
  EHU00855.1  72 TQPGNYPAYYAAIRDAITGRGANPVTAEEAIQVME 106
                 67889***************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 996.15
//
Query:       EHU00856.1  [L=331]
Description: adenosine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-91  306.3   0.0    3.1e-91  306.1   0.0    1.0  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.1   0.0   1.7e-95   3.1e-91       2     326 ..       6     327 ..       5     329 .. 0.99

  Alignments for each domain:
  == domain 1  score: 306.1 bits;  conditional E-value: 1.7e-95
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  lp +d+H Hldg+++ +t+l+l+++ + + l+++ ++++ ++++  e++ +L +fl++l+++v+vl    ++++++a e+++d+a+ + +y+e++fsP
   EHU00856.1   6 LPLTDIHRHLDGNIRAQTILDLGRQFNLT-LPADTLDTLRPHVQVTETQPDLVSFLQKLDWGVKVLG-DLDACQRIARENVEDAARAGIHYAELRFSP 101
                  899************************99.************************************9.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT.TCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEE CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk.peewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpH 196
                   ++a+ + +lp + vv++v+dg+++++++  +++rl+ ++sr+ +e+++ ++ + + ++rd  ++++dl++de + p+++fl+++++a+++++++t+H
   EHU00856.1 102 GYMAMTH-HLPIAGVVEAVIDGVKAACQQHDITVRLTGIMSRTfGEQACLNELNGFLAHRD-HITAVDLAGDELGAPGHRFLSHFRRARDAGFHITVH 197
                  *****99.99**********************************99999999999******.9*********************************** PP

                  ESSSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHHHH CS
  A_deaminase 197 aGEagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYaiaa 294
                  aGEa+g+e++++A+++l+aerigHGv++ +d++L++ la++ i++e c +SN+++++++++a++Plk+fle+g+ +++ntDDP+++g++L++eY  aa
   EHU00856.1 198 AGEAAGPESIWQAIRDLGAERIGHGVKAIEDRALMDYLAENGIGIESCLTSNIQTSTVASLAQHPLKTFLEHGVLATINTDDPAVQGIELAHEYLHAA 295
                  ************************************************************************************************** PP

                  HHHT--HHHHHHHHHHHHHCSSS-HHHHHHHC CS
  A_deaminase 295 qvfklseedlaelarNsvkqsflsadekkkll 326
                   +++ls++++++ + N++  +flsa+ek+++ 
   EHU00856.1 296 PAAGLSQAQMRQAQDNGLTIAFLSAAEKAAIR 327
                  ****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2743.69
//
Query:       EHU00857.1  [L=499]
Description: putative GTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.5e-128  428.6  23.6   3.9e-128  428.4  23.6    1.0  1  DUF945      Bacterial protein of unknown function (DUF945)
  ------ inclusion threshold ------
       0.01   16.1   0.3      0.026   14.8   0.3    1.6  1  P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation


Domain annotation for each model (and alignments):
>> DUF945  Bacterial protein of unknown function (DUF945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.4  23.6  4.4e-132  3.9e-128       1     460 []       1     481 [.       1     481 [. 0.99

  Alignments for each domain:
  == domain 1  score: 428.4 bits;  conditional E-value: 4.4e-132
      DUF945   1 MKKslvavgvvvalgaawtGaswytGkqaeerldeqvaqlnkqlglkvveed......syerGvFsStaklvlq.daagaendedgkpvelvldstiyH 92 
                 MKK+ vavgvvvalg++wtGa+w+tGk++e+++d++++++n+ql   +++++      +y+rG+FsS++ +v+q  ++ ++n   ++++++ l+++i+H
  EHU00857.1   1 MKKTQVAVGVVVALGVVWTGAAWFTGKKLESNMDQMIQNANAQLTTLAPNSRlkvsyqDYQRGIFSSKMNVVIQaSSQTEDNPLLKPGQSIILNEQIDH 99 
                 ***99*********************************************************************99999******************** PP

      DUF945  93 GPlplsr..kfnlspalasvetelaldeatkklfdklkgksPltlttrvgysgstsseltlpafelkeeg..gklewsggkvkvdlskdlkklsgegnl 187
                 GP+p+++  k nl+p++asv+t+l++++a+kklf+ ++++s+++++trvgysgst++++++ ++++++++  ++l  sgg+++++++++ +k+ ++ ++
  EHU00857.1 100 GPFPFAQlkKANLIPSMASVHTTLTNTDAVKKLFELTNNQSFINAETRVGYSGSTDTAIKILPIDYQNAQtaQRLATSGGTLNISADNKGDKVGLDSDI 198
                 ******************************************************************888888*************************** PP

      DUF945 188 dglkleadn....deslelkgltlssdlkrgkeglylGdsslkiasltvssedqegaelknlsldsssteegdllnstlkyslkslklngkdlgslkle 282
                 d+++++++n    ++ ++l+gl+l++d++ ++eg+ +Gd+s+++++++  + +q+++ l+++  dss +  ++++n++++y+++ +++++++lg+  l+
  EHU00857.1 199 DSIAITTKNqvdqPVMFTLNGLKLKADTHLTNEGVRIGDQSISVDKVAAAVSGQDAVILNKMVGDSSFDNQSGKINGDINYKIDGVEVQKQNLGQFALK 297
                 *************************************************************************************************** PP

      DUF945 283 lslnnLdaealkklqeaynqlqakala.....kaeeqlqeqleeallealpkLlakgpeleiselslknpeGeltlnlsldl....apedsaksdsenl 372
                 ++l+++da+++k++++ yn++ ++ ++     +++   q+ +++ ll++lp+Ll++ p+++i++ls+kn +Ge+t+nl++++    + ++++++ +  +
  EHU00857.1 298 MKLSQFDAQSVKAFSDNYNAQLTTLMNqpgveDDPVRFQNGVRAILLNNLPTLLKGAPSISIAPLSWKNDKGESTFNLNAHFndpsTVTGEPQTLAASV 396
                 *******************999999889*********************************************************99999********* PP

      DUF945 373 lqllkkleldaklslpkalleellaqaaksqegadkeeaekqakqqveqllqmlvqqgllklegddlkselkyengqvtlNGkpiple 460
                 +++lk+  ld+kls+++++++e ++ +   +eg+++++a+k+a+qqv++l++m+++++l+++++++++++l+y+ngqv++NG++++le
  EHU00857.1 397 DRVLKT--LDLKLSVNMPMATETMRHI-GLAEGYQADDAQKLADQQVKGLAAMGQMFRLTQTQDNNIVTSLQYANGQVNMNGDKMSLE 481
                 ******..******************9.88899999*************************************************985 PP

>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   2.9e-06     0.026      20      55 ..     413     448 ..     411     470 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHH CS
  P5CR_dimer  20 lliealadagvklGlsreeArelaaqtvaGaaklll 55 
                 ++ e +   g ++G + ++A++la q v+G+a++ +
  EHU00857.1 413 MATETMRHIGLAEGYQADDAQKLADQQVKGLAAMGQ 448
                 56799999*************************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3687.64
//
Query:       EHU00858.1  [L=391]
Description: mannose-6-phosphate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-100  336.8   0.0   6.2e-100  335.0   0.0    1.7  2  PMI_typeI        Phosphomannose isomerase type I
      5e-06   26.1   0.0    0.00045   19.9   0.0    2.4  2  Cupin_2          Cupin domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.23   11.1   0.0    1.5  1  AraC_binding_2   AraC-binding-like domain
       0.12   12.2   0.2        2.1    8.3   0.0    2.6  3  AraC_binding     AraC-like ligand binding domain
       0.13   12.2   0.0       0.23   11.4   0.0    1.3  1  HutD             HutD
       0.18   11.7   0.0       0.35   10.8   0.0    1.4  1  MannoseP_isomer  Mannose-6-phosphate isomerase


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.0   0.0  2.1e-103  6.2e-100       2     371 ..       2     354 ..       1     356 [. 0.94
   2 ?   -0.6   0.0       0.2     6e+02     252     273 ..     358     379 ..     356     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 335.0 bits;  conditional E-value: 2.1e-103
                 EEEEEEEEE-TTBEECGGSHHHHHHHHH-TT..TTSCEEEEEEC--TTS-EE.CTTTC...CCCHCHHHHHHHTGHHHCCHHTSS-SEEEEEEEESS-- CS
   PMI_typeI   2 fkLqcgvqnyaWGkiGsesalakllaasdPsieedkpyaElWmgtHpkgpsk.vlnkk...lkdvvlkellaelresvgkkfgeelpfLfKvLsvekvl 96 
                  k++++vq yaWG   s++al++l++  +P    d p+aElWmg+Hpk+ps  +++++   l+dv+ ++++++l+++v+k+fge lpfLfKvL++e++l
  EHU00858.1   2 KKMSNAVQYYAWG---SKTALTSLYGIANPE---DLPMAELWMGAHPKSPSAvDVEGQsrsLRDVIAAHPSQMLGDAVAKRFGE-LPFLFKVLCAEQPL 93 
                 6899*********...9**************...****************98567888899**********************9.************** PP

                 -EEE---HHHHHH..........HHHH.TCCCHCCCTTTEEEEESS.EEEEEEE..HHHHHHHCCCEHCCHCCCECCHHCCHHHHHHCCHTTSHHHHCC CS
   PMI_typeI  97 SiqvHPdKklaei..........lhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslieagdpealkk 185
                 SiqvHP K  ae           +    ++nY+d+NhkpEl+ Alt+F++++gfr          + +e+  l+++ + +++e +++l +  +p++   
  EHU00858.1  94 SIQVHPSKSAAEEgfarenaasvPLSSPERNYKDANHKPELVYALTPFKAINGFR----------ERNEMVTLLTPVADAHPEIAHFLRQ-PSPDN--- 178
                 ************99*******9999999**************************8..........5689999******************.55555... PP

                 CCHHCCHCHCCCTTTHHCCCHCCCCCCCCCCC-HHHCCCC-HHHHCCHCHHHSTTTTCHCH.TTEEEEEE.TT.EECCHCCHHCECCEEEEEEEEES-E CS
   PMI_typeI 186 kkvlqklFssllnsekekikqklallveriqssdaevnktdlaelidrlneqyPddiGlfa.llLNlvkLnpGEAmflkandphaylsGdivecmaasd 283
                    l++lFs+ll  +++++ q+l+ l++  +++ +e+++t     i+ + e+yPdd+Glf+ llLN+++L+pG Amfl+a++phayl+G+++e+ma+sd
  EHU00858.1 179 ---LAQLFSTLLSLQQDEKAQALTVLKNVVSQQTGEPWQT-----IHEIAEYYPDDSGLFSpLLLNVITLQPGQAMFLFAETPHAYLHGVALEVMANSD 269
                 ...56***********************************.....9999************************************************** PP

                 EEEECCCECCEEECHCCHCH.EEEEEECCCCEE--BSCEECEEEEEEE.CCCCECCEEECCCTTEEEEE-TTS-EEEEEEECEEEEEEC CS
   PMI_typeI 284 nvvRaGlTpKfidvkelvemltYkykpsdelklqqteslldasvlydp.pieefavektklkkgeatilplesasiliaveGtatiivs 371
                 nv+RaGlTpK+id++el+++l+++ kp+ +l++q++ + +     y+p p+++fa++ ++++++  t++ +esa++l+++eG+at++  
  EHU00858.1 270 NVLRAGLTPKYIDIPELMANLKFDEKPASQLLTQPEIQQDGE---YFPiPVDDFAFSIHTVNAQPLTLH-QESAALLFCIEGEATVTNR 354
                 ************************************966666...8888*********99987766655.56*************9865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.2
                 EEE.TT.EECCHCCHHCECCEE CS
   PMI_typeI 252 vkLnpGEAmflkandphaylsG 273
                 + L+pGE  f+ a d++  l G
  EHU00858.1 358 LMLKPGESCFVAATDAPVSLTG 379
                 579***********99988777 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.018        55      38      57 ..     237     256 ..     235     263 .. 0.91
   2 !   19.9   0.0   1.5e-07   0.00045      12      51 ..     331     370 ..     324     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
                 EEEEETTEEEEE-TT-EEEE CS
     Cupin_2  38 eveleaGdsvyfpagtpHrf 57 
                 +++l++G++++  a tpH++
  EHU00858.1 237 VITLQPGQAMFLFAETPHAY 256
                 689***************98 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.5e-07
                 EEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-T CS
     Cupin_2  12 pshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpa 51 
                 p   H+++ ++++++eGe+++t   ++  l++G+s ++ a
  EHU00858.1 331 PLTLHQESAALLFCIEGEATVTNRQQQLMLKPGESCFVAA 370
                 5567*9*****************************99977 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.8e-05      0.23      53      97 ..     336     381 ..     304     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.8e-05
  AraC_binding_2  53 ddfylvqlplsGraeveqggrevvlgpgd.avvldpgrpyrlrwsa 97 
                     ++   ++++++G+a+v+ +++++ l pg+ ++v++++ p++l+ ++
      EHU00858.1 336 QESAALLFCIEGEATVTNRQQQLMLKPGEsCFVAATDAPVSLTGQG 381
                     3356799**********************78888888899998766 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.1   3.4e+03     100     120 ..     173     191 ..     161     200 .. 0.57
   2 ?    0.4   0.0      0.19   5.6e+02      44      61 ..     239     256 ..     236     259 .. 0.90
   3 ?    8.3   0.0    0.0007       2.1      23      54 ..     338     369 ..     328     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                   E---TTTHHHHHHHHHHHHHH CS
  AraC_binding 100 lledeelaqllralfrlleet 120
                   ++   +laql++ l++l   +
    EHU00858.1 173 QPSPDNLAQLFSTLLSLQ--Q 191
                   455556666666666666..2 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
                   EE-TT-EEEE-TTS-EEE CS
  AraC_binding  44 dlgpGdlfLlppgepHdy 61 
                    l+pG+ ++l  ++pH y
    EHU00858.1 239 TLQPGQAMFLFAETPHAY 256
                   689*************98 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0007
                   SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE- CS
  AraC_binding  23 eyvihyvteGtgrlrlngrtydlgpGdlfLlp 54 
                    + +  ++eG+++++ ++++  l+pG+ +++ 
    EHU00858.1 338 SAALLFCIEGEATVTNRQQQLMLKPGESCFVA 369
                   788999*********************99875 PP

>> HutD  HutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.6e-05      0.23     119     181 ..     325     383 ..     319     385 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.6e-05
                 EEEEEEEEEEE.--SEEEEEESSS-EEEEETTE..EEEE-TT-EEEEES--EEEEEEEEEEEE CS
        HutD 119 lelekkaaasasgastvllfllkgqlevtlsveaadetlaagdalllegeaalelelegegel 181
                 +++ +++  + +++s+ llf+ +g+++vt++  +++  l+ g+++ + +++ + ++l+g+g++
  EHU00858.1 325 HTV-NAQPLTLHQESAALLFCIEGEATVTNR--QQQLMLKPGESCFVAATD-APVSLTGQGRV 383
                 444.34444556788899******9999766..67999*999999888888.68888888876 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.35       8     117 ..     264     371 ..     258     384 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
  MannoseP_isomer   8 vvetkdavlvad.kdkvqdvkkvveelkaegreeaelh.revyrPWGsyevldege.ryqvkritvkPgeklslqkhhhraehWvvvkGtakvt 98 
                      v++++d vl a    k  d+ +++ +lk +++ + +l  +  ++  G+y  +   + ++ ++++  +P     l  h+  a    +++G a vt
       EHU00858.1 264 VMANSDNVLRAGlTPKYIDIPELMANLKFDEKPASQLLtQPEIQQDGEYFPIPVDDfAFSIHTVNAQP-----LTLHQESAALLFCIEGEATVT 352
                      66666777766513467788888888888888876654144677788888887665357777777776.....5679999999*********** PP

  MannoseP_isomer  99 vddevlllkenestyiplg 117
                      + +++l+lk  es ++ ++
       EHU00858.1 353 NRQQQLMLKPGESCFVAAT 371
                      ***************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2769.73
//
Query:       EHU00859.1  [L=465]
Description: fumarate hydratase (fumarase C),aerobic Class II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-122  409.2   0.1   1.6e-122  408.8   0.1    1.2  1  Lyase_1      Lyase
    1.7e-25   89.2   0.3    5.6e-25   87.5   0.1    2.0  2  FumaraseC_C  Fumarase C C-terminus
  ------ inclusion threshold ------
       0.13   11.4   0.0        0.2   10.8   0.0    1.2  1  G-alpha      G-protein alpha subunit
        0.2   12.1   0.0       0.67   10.4   0.0    1.9  1  DUF4288      Domain of unknown function (DUF4288)


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.8   0.1  3.7e-126  1.6e-122       1     312 []      12     342 ..      12     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 408.8 bits;  conditional E-value: 3.7e-126
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.....HHHHHHHHHHHTTSST....HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.....alaalkkaaakanvdl....keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnev 90 
                 g ++v+adkl+g++t+rs+e+fr+s e+       ala++k+aaa++n dl    +e a+aii+a+devl+  k+ d+f+l+ +q+gsgt++nmn+nev
  EHU00859.1  12 GPIDVPADKLWGAQTQRSLEHFRISTEKMPvalvhALAMTKRAAASVNRDLgllpAERAEAIIQAADEVLA-DKHSDEFPLAIWQTGSGTQTNMNMNEV 109
                 56899********************7766699999************************************.66777********************** PP

                 HH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHH CS
     Lyase_1  91 ig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaeal 179
                 ++    ellg      ++v+pnd+v+++qSsnD++pTa+++a++ a++e+L+p+l+ L+++l++k+ +fkd+vkiGrThlqdAtP+tlgqe+s+++++l
  EHU00859.1 110 LAnrasELLGgergmsRLVHPNDDVNKSQSSNDVFPTAMHVAAVIAVREHLIPQLNVLKQTLRAKSDAFKDIVKIGRTHLQDATPLTLGQEISGWVAML 208
                 ***99999999**************************************************************************************** PP

                 HHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSS CS
     Lyase_1 180 erdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.agl 276
                 e+++++++++   +l+el+ ggtavgtgln++pe+a +vak la++t +p v+apn+fea++++Da+v ++galk la+sL+k+a+D+r+lssg+ +g+
  EHU00859.1 209 EHNLKHIEQSI-PHLAELALGGTAVGTGLNTHPEYAVRVAKALAELTEQPfVTAPNKFEALATCDALVHAHGALKGLAASLMKIANDVRWLSSGPrCGI 306
                 ***********.9************************************************************************************** PP

                 EEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 277 velslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                 +e+ ++e+epGSSiMPgKvNP+q+E++t+ +++v+G
  EHU00859.1 307 GEIAIPENEPGSSIMPGKVNPTQCEAMTMLCCQVMG 342
                 ***********************************9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   5.2e+03      31      48 ..      58      75 ..      46      78 .. 0.72
   2 !   87.5   0.1   1.2e-28   5.6e-25       1      54 []     408     461 ..     408     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
                 HHHHTT-.-HHHHHHHT- CS
  FumaraseC_C 31 avlelgllteeeldelld 48
                 +  +lgll +e+ +++++
   EHU00859.1 58 VNRDLGLLPAERAEAIIQ 75
                 445789999999888876 PP

  == domain 2  score: 87.5 bits;  conditional E-value: 1.2e-28
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH. CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMtg 54 
                  LVTaLn hIGY+kAa+IAk+A+k+g tl+  +l+lg+lte+e+d++++pe+M+g
   EHU00859.1 408 LVTALNTHIGYDKAAEIAKQAHKQGLTLKASALKLGYLTEAEFDAWVRPEDMVG 461
                  8***************************************************95 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.5e-05       0.2      55     105 ..     357     405 ..     346     439 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
                 HHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS-HC CS
     G-alpha  55 elatwraviqlnivrsiktilealesleselsesfelqelkerldplkkve 105
                 el+ +r++i++n+++s++++ + ++s+++ +   +  + ++er+d+l++ +
  EHU00859.1 357 ELNVYRPMIIHNFLQSVRLLADGMDSFNHHC--AVGIEPVRERIDQLLNES 405
                 55679**********************9999..778899999999988655 PP

>> DUF4288  Domain of unknown function (DUF4288)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.67      17      57 ..     397     437 ..     384     449 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
     DUF4288  17 deqeqfeErlvLvkAdseeeAyekaeklgkeeeepyknadg 57 
                   +++ +E+l+Lv A +    y+ka +++k+++++  + + 
  EHU00859.1 397 RIDQLLNESLMLVTALNTHIGYDKAAEIAKQAHKQGLTLKA 437
                 5678999************************9998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3430.38
//
Query:       EHU00860.1  [L=308]
Description: inhibitor of replication at Ter, DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.1e-131  436.4   5.5   4.6e-131  436.2   5.5    1.0  1  Ter            DNA replication terminus site-binding protein 
  ------ inclusion threshold ------
      0.035   14.6   0.1      0.074   13.6   0.1    1.6  1  DUF1878        Protein of unknown function (DUF1878)
       0.07   12.2   0.7       0.58    9.2   0.3    2.2  2  IFRD           Interferon-related developmental regulator (IF
       0.14   12.7   0.4       0.54   10.8   0.3    2.1  1  zf-C4pol       C4-type zinc-finger of DNA polymerase delta


Domain annotation for each model (and alignments):
>> Ter  DNA replication terminus site-binding protein (Ter protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.2   5.5    1e-134  4.6e-131       2     296 .]       9     303 ..       8     303 .. 1.00

  Alignments for each domain:
  == domain 1  score: 436.2 bits;  conditional E-value: 1e-134
         Ter   2 lneqfeqleealaalkqeleqlellaarvfeLPevekgkEhepvekikvtqltgeeAlelalshfrrlfikqqseklSskaavRlpGvlcfsvsnaeka 100
                 ++++++ leeal al+q++e ++ll arvf+LP++ekg+Eh+ +++i+v+q+ g+eA+e al+h+ rlf+++qseklS+kaavRlpG+lc++ s+++++
  EHU00860.1   9 MQQCVKDLEEALGALRQQIEAQPLLIARVFSLPPIEKGHEHDAITQIAVEQHLGTEARERALNHYCRLFMQHQSEKLSTKAAVRLPGALCIECSEQDAQ 107
                 89************************************************************************************************* PP

         Ter 101 elealieeiNklKaeleeiitvesglekeerFefvhrhlpglitlnayRkltllenpssvrFgWanKqiikkltreevleqLekslkapravapytreq 199
                 +l+a i++iN+lKa+le++itvesgl++e+rFefvh+hl+glitlnayR++t l  p+svrFgWanKq+ik+++r+e+++qLekslka+ra+ap+treq
  EHU00860.1 108 QLTAFINSINQLKARLEHMITVESGLPSEARFEFVHQHLRGLITLNAYRTITALPAPESVRFGWANKQVIKNVKRDEIIAQLEKSLKAGRAQAPWTREQ 206
                 *************************************************************************************************** PP

         Ter 200 wqekveqeiqdvkslPekakLkikRpvkvqPiarvwyaeqqkqvqlacplPllvlceeeeevpklgeLknYdaenikkrqkpkakklelliprLhly 296
                 w+ekv+qe+ dv++lP++a+LkikRpvkvqP+ar+w ae++kq+qlacp+P+lvlc+++++vpklgeL nYdae+i +r+kp+a++l+lliprLhl+
  EHU00860.1 207 WAEKVQQELADVRALPASARLKIKRPVKVQPVARIWRAEEKKQTQLACPSPILVLCRDRTQVPKLGELLNYDAEAITHRYKPAAEPLHLLIPRLHLW 303
                 ***********************************************************************************************97 PP

>> DUF1878  Protein of unknown function (DUF1878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.6e-05     0.074      24      89 ..      68     133 ..      49     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                 TTT-HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHH CS
     DUF1878  24 eeklpfyklviekklskeeveeilklCekLseeleeqkaegfvlFdkllakFakkLhekLeveeti 89 
                 +    + +l ++++ +k   ++ ++l   L  e +eq a+ ++ F + +++ + +L++ + ve+ +
  EHU00860.1  68 RALNHYCRLFMQHQSEKLSTKAAVRLPGALCIECSEQDAQQLTAFINSINQLKARLEHMITVESGL 133
                 44556889**************************************************99998765 PP

>> IFRD  Interferon-related developmental regulator (IFRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00013      0.58      42     133 ..      50     150 ..      47     160 .. 0.63
   2 ?    0.7   0.0     0.049   2.2e+02      78      95 ..     181     198 ..     174     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00013
        IFRD  42 qaidelt...eksaktReaaLesllellsshyleefveerlatlldalekslkkgkse.EqalA.lkalall......citlgagdeseeileelkpvL 129
                 +ai+++    +  +++Re+aL+ +++l+++h  e+   +  + l  al  ++  ++++  q++A ++ +  l      +it+++g +se  +e ++++L
  EHU00860.1  50 DAITQIAveqHLGTEARERALNHYCRLFMQHQSEKLSTKAAVRLPGAL--CIECSEQDaQQLTAfINSINQLkarlehMITVESGLPSEARFEFVHQHL 146
                 66777777667789****************988876666555555444..3333333322222212233333455666777777777777777777777 PP

        IFRD 130 krii 133
                 + +i
  EHU00860.1 147 RGLI 150
                 6666 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.049
        IFRD  78 rlatlldalekslkkgks 95 
                 ++ +++++lekslk g++
  EHU00860.1 181 KRDEIIAQLEKSLKAGRA 198
                 7899**********9986 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00012      0.54       9      43 ..      90     128 ..      72     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
    zf-C4pol   9 k....kalCkkCrsdkqesllkllsrlkelekklnelet 43 
                 +     alC +C+++++++l++ ++++++l+ +l+++ t
  EHU00860.1  90 AvrlpGALCIECSEQDAQQLTAFINSINQLKARLEHMIT 128
                 1445589******999999************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2248.20
//
Query:       EHU00861.1  [L=205]
Description: phosphoesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-10   40.0   8.4    6.3e-10   38.9   8.4    1.6  1  PAP2       PAP2 superfamily
    0.00012   21.8  16.2    0.00063   19.5  16.2    1.9  1  PAP2_3     PAP2 superfamily
  ------ inclusion threshold ------
      0.078   12.9   1.8       0.75    9.7   0.1    2.2  2  DUF2678    Protein of unknown function (DUF2678)
       0.33   10.9   7.6      0.073   13.0   1.1    2.2  2  RseC_MucC  Positive regulator of sigma(E), RseC/MucC
        4.5    7.2  11.5       0.11   12.4   4.2    2.1  2  DUF2873    Protein of unknown function (DUF2873)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   8.4   1.8e-13   6.3e-10       5     133 ..      62     173 ..      58     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.8e-13
        PAP2   5 lllalalaall.tsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsR 102
                 ++++ a+++l+ + +   ++  pRPf++   +    +  +         + sfPS H +  f++ l+l++  +             il+l+++lva+sR
  EHU00861.1  62 FAIVTAITGLTlNFLCSAFYFHPRPFMIRLGHLWIDH-AA---------DTSFPSDHGTLFFSITLALWARGNWGSGG--------ILTLVSLLVAWSR 142
                 3444444444426666999999***998777666666.44.........46******998888777777665555555........8************ PP

        PAP2 103 lylgvHflsDvlaGlliGialaalayrlvqk 133
                 ++lgvHf+ D  ++l ++++ +++++ ++ k
  EHU00861.1 143 IFLGVHFPLDMAGALGVAAVAVIIVTLFWRK 173
                 **********999977777766666665554 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  16.2   1.8e-07   0.00063      28     189 ..      26     165 ..      11     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.8e-07
      PAP2_3  28 lavilala..Yaslhfqvtllvlvllf.lrrrerlreflttlllatllgllvyalfPaagPrlleeagfvdtvaaaslagalrdgasravllrgtieng 123
                 l +++ +   Y +++++++ll+++++  +++re ++ +++t +  ++l +l++a++   +P+++         +            +++++++++   +
  EHU00861.1  26 LIDFATFSaeYLIFLLPLMLLIYWFTGgRAERETALFAIVTAITGLTLNFLCSAFYFHPRPFMI---------R------------LGHLWIDHA---A 100
                 44444444669999999999999999999999999999999999999********9999**877.........2............334555554...6 PP

      PAP2_3 124 laafPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                   +fPS H ++ + ++lalw   ++   + ++ l+ +l++++ + +g H+ +D+++++ +a+va++
  EHU00861.1 101 DTSFPSDHGTLFFSITLALWARGNWG-SGGILTLVSLLVAWSRIFLGVHFPLDMAGALGVAAVAVI 165
                 679***************99988888.9*********************************99975 PP

>> DUF2678  Protein of unknown function (DUF2678)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00021      0.75      74     114 ..      42      83 ..      23      85 .. 0.79
   2 ?    2.5   0.2     0.036   1.3e+02      60      86 ..     151     176 ..     106     193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00021
     DUF2678  74 svivlifwyrqgdlepkfrnl.iyyilasivllclcanlyfh 114
                   ++li+w+  g  e     + i   ++ + l  lc+ +yfh
  EHU00861.1  42 PLMLLIYWFTGGRAERETALFaIVTAITGLTLNFLCSAFYFH 83 
                 5689*******99987655432666778889999*******9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.036
     DUF2678  60 lniffavcillisssvivlifwyrqgd 86 
                 l++  a+ +    + +iv +fw ++g+
  EHU00861.1 151 LDMAGALGVAA-VAVIIVTLFWRKKGE 176
                 33333443333.234567789999997 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1     2e-05     0.073      64     113 ..      32      80 ..      28      85 .. 0.90
   2 ?    1.4   0.7     0.077   2.8e+02      84     117 ..     139     173 ..     128     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
   RseC_MucC  64 lkaallvYllPllllilgallgsallgssellaalgallglvlgflivrl 113
                 ++a  l++llPl+lli     g a   ++ l+a+++a+ gl l fl+  +
  EHU00861.1  32 FSAEYLIFLLPLMLLIYWFTGGRAE-RETALFAIVTAITGLTLNFLCSAF 80 
                 678899*****************99.7*****************998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.077
   RseC_MucC  84 lgsall.gssellaalgallglvlgflivrllskr 117
                 + s ++ g +  l ++gal +++++++iv+l+ ++
  EHU00861.1 139 AWSRIFlGVHFPLDMAGALGVAAVAVIIVTLFWRK 173
                 33333346677778888888888888888877665 PP

>> DUF2873  Protein of unknown function (DUF2873)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.2     3e-05      0.11       6      31 ..      26      51 ..      25      53 .. 0.89
   2 ?   -4.2   0.7       4.6   1.6e+04      22      29 ..     164     171 ..     162     171 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
     DUF2873  6 LiDfYLCfLafLLfLvLimLiifWfs 31
                LiDf      +L+fL  +mL+i+Wf 
  EHU00861.1 26 LIDFATFSAEYLIFLLPLMLLIYWFT 51
                8999877778***************5 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4.6
     DUF2873  22 LimLiifW 29 
                 +i++ +fW
  EHU00861.1 164 VIIVTLFW 171
                 56777888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.46
# Mc/sec: 1329.25
//
Query:       EHU00862.1  [L=256]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-76  255.6  21.9    4.7e-76  255.4  21.9    1.0  1  UPF0014   Uncharacterised protein family (UPF0014)


Domain annotation for each model (and alignments):
>> UPF0014  Uncharacterised protein family (UPF0014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4  21.9   2.6e-80   4.7e-76       3     242 .]      10     245 ..       9     245 .. 0.99

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 2.6e-80
     UPF0014   3 qlalalllvlialllslvlklglekelliaavrmvvQLllvGyvLklifalnslllvllillvmllvAaieaakrvkkklkklllivllsllvstlltl 101
                 +l+l+l+lvl+all+s ++klg++k++l+++ r++vQL++vGyvLk +f++n+  l++l++l+++++Aa +a+kr ++++ ++++i++++++ +t++tl
  EHU00862.1  10 SLLLSLVLVLMALLISQKEKLGMSKDILWSVSRAIVQLAIVGYVLKSVFDVNNGGLTVLMVLFICVNAALNARKR-SRNIGNAFVISFVAIASGTAITL 107
                 6899***********************************************************************.999*******************9 PP

     UPF0014 102 llllllviqpepwyepqylIPlaGmilGnamnaialalerllselksereeiealLalGatpkeAvkeivreairaaliPtinsmatvGlVsLPGmmtG 200
                 ++l++   ++++++ p+++IP++Gmi Gnam a++l++++l+++++++ ++i+++L+lGa  k A+++i+ e+iraa+iPt+++++tvGlVsLPGmm+G
  EHU00862.1 108 TILVM---SGAIAFLPMQVIPVSGMIAGNAMVAVGLCYSNLNQRFSDNAQKIQEMLSLGAPVKLASQRILAESIRAAMIPTVDAAKTVGLVSLPGMMSG 203
                 99988...99***************************************************************************************** PP

     UPF0014 201 qiLaGaspleAvkyqilimfmilastalstvlvvlllyrrlf 242
                 +i+aG++pl+A+kyqi+++fm+l++++lst+++v+l+yrr+f
  EHU00862.1 204 LIFAGVDPLKAIKYQIMVTFMLLGTASLSTIIAVYLSYRRFF 245
                 *****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1027  (0.0572815); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1827.23
//
Query:       EHU00863.1  [L=245]
Description: ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-30  104.6   0.0    9.1e-30  104.0   0.0    1.3  1  ABC_tran      ABC transporter
    3.6e-08   33.1   0.0    4.4e-07   29.6   0.0    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
    5.4e-07   29.3   0.1    1.1e-06   28.3   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
    5.8e-07   30.0   0.3    8.4e-07   29.5   0.3    1.1  1  AAA_16        AAA ATPase domain
    1.3e-05   25.1   0.0    0.00035   20.5   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00015   21.7   0.0    0.00026   20.9   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
    0.00077   19.4   1.1     0.0077   16.2   0.0    2.4  2  NACHT         NACHT domain
    0.00083   19.6   0.3     0.0036   17.6   0.3    1.9  1  AAA_22        AAA domain
      0.001   19.3   0.1      0.005   17.1   0.0    1.9  2  AAA_28        AAA domain
     0.0015   18.0   0.0     0.0036   16.7   0.0    1.6  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0019   18.7   0.0     0.0023   18.5   0.0    1.3  1  AAA_23        AAA domain
     0.0023   18.5   0.0     0.0046   17.5   0.0    1.5  1  AAA_18        AAA domain
     0.0025   17.7   0.2      0.019   14.9   0.0    1.9  2  Rad17         Rad17 P-loop domain
     0.0049   16.6   0.0       0.01   15.6   0.0    1.5  1  AAA_30        AAA domain
     0.0056   16.3   0.1      0.014   15.0   0.0    1.7  2  AAA_25        AAA domain
     0.0076   16.4   0.0      0.014   15.5   0.0    1.6  1  AAA_33        AAA domain
     0.0079   15.5   0.1      0.015   14.6   0.0    1.5  2  KAP_NTPase    KAP family P-loop domain
  ------ inclusion threshold ------
      0.013   15.5   0.2       0.12   12.3   0.0    2.0  2  NTPase_1      NTPase
       0.02   14.3   0.0      0.035   13.5   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.021   14.6   0.0      0.022   14.5   0.0    1.1  1  AAA_15        AAA ATPase domain
      0.022   13.9   0.0      0.022   13.9   0.0    1.1  1  G-alpha       G-protein alpha subunit
      0.025   13.6   0.1      0.047   12.7   0.0    1.5  2  T2SSE         Type II/IV secretion system protein
      0.027   14.5   0.1       0.19   11.7   0.1    2.1  2  AAA_5         AAA domain (dynein-related subfamily)
      0.027   14.5   0.0       0.15   12.1   0.0    2.0  2  AAA_14        AAA domain
      0.038   14.0   0.1       0.07   13.1   0.1    1.4  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.042   14.3   0.1       0.39   11.1   0.1    2.1  1  AAA           ATPase family associated with various cellular 
      0.051   13.8   0.1        2.2    8.6   0.1    2.4  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.052   14.0   0.0       0.12   12.8   0.0    1.6  1  RNA_helicase  RNA helicase
      0.083   11.9   0.1       0.13   11.2   0.1    1.2  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
      0.086   12.9   0.0       0.11   12.5   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
      0.097   12.6   0.0       0.19   11.6   0.0    1.5  1  APS_kinase    Adenylylsulphate kinase
       0.11   11.7   0.0       0.18   11.0   0.0    1.3  1  Zeta_toxin    Zeta toxin
       0.13   12.0   0.0       0.19   11.4   0.0    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family
       0.13   11.7   0.0       0.24   10.8   0.0    1.4  1  KTI12         Chromatin associated protein KTI12
       0.14   12.1   0.0       0.28   11.1   0.0    1.6  1  ATPase_2      ATPase domain predominantly from Archaea
       0.16   11.6   0.0       0.25   11.0   0.0    1.3  1  AAA_24        AAA domain
       0.21   11.0   0.1       0.32   10.4   0.1    1.2  1  Pox_A32       Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   1.9e-32   9.1e-30       1     137 []      43     186 ..      43     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 1.9e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeieka 88 
                 l+ vsl+l++g +v+++G +G+GKSt+lk+la ll+pt Gei+++g+d+ + + e++r+++++++q+pqlf ++ v++n             ++++++a
  EHU00863.1  43 LQPVSLQLSPGDVVVLTGASGSGKSTFLKILASLLTPTTGEIRFQGRDIATLRAEEYRQQVSYCFQTPQLFGQT-VYDNlalpwqlrrqtPPQAKLKAA 140
                 688**********************************************************************9.********8766555555557777 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l++++l+    + ++   + LSgG+kqr+ l r l   p +lllDE t+
  EHU00863.1 141 LESVNLSP---DMLNAAIEPLSGGEKQRIGLLRHLQFVPAVLLLDEVTS 186
                 77777665...6666667****************************985 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   9.1e-10   4.4e-07      26     214 ..      55     233 ..      40     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 9.1e-10
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevs 124
                 + +++G+ GSGKs +l  +  +L  ++  ++r +  + + +    +a+  + +v+  f+ ++   ++  +++ +  ++ r+   + k+          +
  EHU00863.1  55 VVVLTGASGSGKSTFLKILASLLTPTTG-EIRFQGRD-IATL---RAEEYRQQVSYCFQTPQLFGQTVYDNLALPWQLRRQTPPQAKL----------K 138
                 67889************99999997666.88876554.4443...4555666899999999888555555555555555555555555..........4 PP

                 HHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEEE CS
                 xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 ellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtkv 214
                   les+++s++        LSgGek+ + l  l    ++ pa   llDe+ +aLDe+n   v +l+++   +  + ++ is++ + +++a++++++t+ 
  EHU00863.1 139 AALESVNLSPDmlnaaiePLSGGEKQRIGL--L-RHLQFVPAV-LLLDEVTSALDEENSLTVQSLIRRLVAEhpMAVVWISHDVNDIQQAEHVLRLTSP 233
                 4444444444433333337******97765..3.455666765.589********************8765534888999*************999874 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   2.2e-09   1.1e-06      16      54 ..      47      86 ..      41      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.2e-09
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalLvpak.kvrf 54
                ++++++ ++++ltG+sGsGKST+l  ++ lL+p++ ++rf
  EHU00863.1 47 SLQLSPGDVVVLTGASGSGKSTFLKILASLLTPTTgEIRF 86
                577888889************************9977776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.3   1.7e-09   8.4e-07      25     170 .]      54     212 ..      40     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.7e-09
      AAA_16  25 elvllsGesGvGKsslvrellralekd..ggiflrgkcdql..esaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaea.. 116
                  +v+l+G+sG+GKs+ ++ l+  l+ +  +   +r + ++    +a +y + +  ++ + +l+ q   +   +++ +w+ + ++  +  ++l++a++  
  EHU00863.1  54 DVVVLTGASGSGKSTFLKILASLLTPTtgE---IRFQGRDIatLRAEEYRQqVSYCFQTPQLFGQTVYD---NLALPWQLRRQTPPQ--AKLKAALEsv 144
                 689**************9888666655431...444444443344455544477778777888888877...677888887777654..5555555555 PP

      AAA_16 117 srllellkrllallsrder............plvlvlDdlqwadeaslql.laaLlrllesk.pllvv 170
                 +   + l+++++ ls +e+            p vl+lD++  a ++  +l  ++L r+l +  p++vv
  EHU00863.1 145 NLSPDMLNAAIEPLSGGEKqrigllrhlqfvPAVLLLDEVTSALDEENSLtVQSLIRRLVAEhPMAVV 212
                 66667777777666666667788888888889*********999999999999999997775576665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.3e-07   0.00035       1      33 [.      55      81 ..      55     120 .. 0.73
   2 ?    2.9   0.0      0.16        77     238     272 ..     159     190 ..     123     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.3e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdveglt 33
                + vl+G+ gsGKS++L++l  l        ++t
  EHU00863.1 55 VVVLTGASGSGKSTFLKILASLLT------PTT 81
                579****************88853......332 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHP 272
                 S G k+ ++ll  l   +   ++ll+DE+ + L+ 
  EHU00863.1 159 SGGEKQRIGLLRHLQFVP---AVLLLDEVTSALDE 190
                 666666666666666666...9*********9985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.4e-07   0.00026      83     132 ..      36      86 ..       9     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.4e-07
                  -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  83 saktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  s   ++ l+ ++ +l+  +++vl G SG GKSt+++ l++ l+  tge++ 
   EHU00863.1  36 SHGGRQLLQPVSLQLSPgDVVVLTGASGSGKSTFLKILASLLTPTTGEIRF 86 
                  5555566677777777769****************************9985 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.6e-05    0.0077       1      25 [.      54      78 ..      54      86 .. 0.89
   2 ?    1.7   0.2      0.46   2.2e+02      90     125 ..     181     214 ..     102     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-05
                SCEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  1 rlvilqGeaGsGKTtLlqklalawa 25
                ++v+l+G++GsGK+t+l+ la+++ 
  EHU00863.1 54 DVVVLTGASGSGKSTFLKILASLLT 78
                589****************999875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.46
                 STT-SS-TCH.........HHHHHCTTTTT--EEEE CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeaslll 125
                 lDe+ + l++++   v+ l+++l+ +   p a +++
  EHU00863.1 181 LDEVTSALDEENSLTVQSLIRRLVAE--HPMAVVWI 214
                 46666666666677888888888888..55544444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   7.4e-06    0.0036       7     126 ..      55     212 ..      50     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.4e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee................erpevvfvtlpsst.sskdllrellralglelka............erlsse 76 
                 ++v+tG sG+GK+t l+ l++ l+      +                e +++v+++ + +    ++++ +l+  ++l++ +             +ls +
  EHU00863.1  55 VVVLTGASGSGKSTFLKILASLLTPT----TgeirfqgrdiatlraeEYRQQVSYCFQTPQlFGQTVYDNLALPWQLRRQTppqaklkaalesVNLSPD 149
                 789*******************9533....234669777777777774444444444444433566666666666666666888888877764333333 PP

      AAA_22  77 ellealeqalrarav...........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqli 126
                  l +a+e  +   +            +++l++DE+   l+   s ++ + +r+l+   +++++++
  EHU00863.1 150 MLNAAIEPLSGGEKQrigllrhlqfvPAVLLLDEVTSaLDeenSLTVQSLIRRLVA--EHPMAVV 212
                 33344444444444477777777888999999999988877655777777777777..7777665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     1e-05     0.005       2      30 ..      56      84 ..      55     122 .. 0.77
   2 ?   -0.3   0.0       2.2   1.1e+03     130     161 ..     189     219 ..     162     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-05
      AAA_28  2 ivitGgestGKTtlleaLaargypvvpEa 30
                +v+tG++++GK+t l+ La+  +p+  E+
  EHU00863.1 56 VVLTGASGSGKSTFLKILASLLTPTTGEI 84
                8******************9877776664 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.2
      AAA_28 130 dleereaiderlrealrelgipviivpsgdve 161
                 d+e+   ++ ++r ++ e+++ v+ + s dv+
  EHU00863.1 189 DEENSLTVQSLIRRLVAEHPMAVVWI-SHDVN 219
                 77888889999999999999999988.77765 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.4e-06    0.0036      30      81 ..      45      93 ..      30     102 .. 0.75
   2 ?   -2.2   0.0       4.3   2.1e+03     212     226 ..     192     206 ..     178     233 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.4e-06
                  EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTS CS
  FtsK_SpoIIIE 30 plvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykg 81
                  p+ l+l++    +++ Ga+gsGKSt+l+ +++Sl+t  t  e+++   D ++
    EHU00863.1 45 PVSLQLSPGD-VVVLTGASGSGKSTFLK-ILASLLT-PTTGEIRFQGRDIAT 93
                  6666666666.67889***********8.5688887.566777776666665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
                   ....HHHHHHHHHHH CS
  FtsK_SpoIIIE 212 ssvlvedaivRlark 226
                   +s  v+++i+Rl++ 
    EHU00863.1 192 NSLTVQSLIRRLVAE 206
                   355566666666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.7e-06    0.0023      11      58 ..      44      91 ..      31     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.7e-06
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTildAiklaLygetprlsrksgrgf 58
                + +++++s+  ++++tG  G+GK+T+l  +   L+  t++ + + gr++
  EHU00863.1 44 QPVSLQLSPgDVVVLTGASGSGKSTFLKILASLLTPTTGEIRFQ-GRDI 91
                556677777459*******************9999877766544.4444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.5e-06    0.0046       1      27 [.      56      87 ..      56     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.5e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf....gvn 27
                ++ltG++G+GK+t+ k L+++l        ++
  EHU00863.1 56 VVLTGASGSGKSTFLKILASLLtPTtgeiRFQ 87
                79****************99973335555444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.9e-05     0.019      34      72 ..      42      80 ..      39      92 .. 0.86
   2 ?    0.5   0.0      0.99   4.8e+02     135     177 ..     178     220 ..     164     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.9e-05
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLskelgik 72
                 l+  +L+  +  +++++G sG gkst +k+L+  l++ 
  EHU00863.1 42 LLQPVSLQLSPGDVVVLTGASGSGKSTFLKILASLLTPT 80
                66777888889999*******************988765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.99
       Rad17 135 lilvedlPnkfyrds.dalrevirkylrssealplilviteies 177
                 ++l++++ +    +   +++ +ir+ +  +++++++ +  +++ 
  EHU00863.1 178 VLLLDEVTSALDEENsLTVQSLIRRLVA-EHPMAVVWISHDVND 220
                 6899999999887765889999998765.566688877766654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.1e-05      0.01      16      45 ..      51      80 ..      41      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa 45
                s+  v+vltG+ G+GK+t lk l+ +++  
  EHU00863.1 51 SPGDVVVLTGASGSGKSTFLKILASLLTPT 80
                45569******************9998866 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.9e-05     0.014      30      72 ..      50      89 ..      21     106 .. 0.75
   2 ?   -2.2   0.0       5.4   2.6e+03     169     169 ..     200     200 ..     168     222 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-05
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tGkpwlgpvapeqg 72
                l  g++++l+Ga+g+GK+t++  la  ++  t     g+++ + +
  EHU00863.1 50 LSPGDVVVLTGASGSGKSTFLKILASLLTptT-----GEIRFQGR 89
                45799***************877766555333.....43444555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.4
      AAA_25 169 v 169
                 +
  EHU00863.1 200 I 200
                 2 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     3e-05     0.014       1      24 [.      55      78 ..      55     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklg 24
                +v+l G++GsGKst+++ l+  l+
  EHU00863.1 55 VVVLTGASGSGKSTFLKILASLLT 78
                899*************99876655 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     3e-05     0.015      16      45 ..      49      78 ..      41     166 .. 0.80
   2 ?   -2.1   0.0       3.6   1.7e+03     174     218 ..     176     222 ..     147     227 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
  KAP_NTPase 16 tlatpivvgLygkWGsGKssllnkledelk 45
                +l+++ vv+L+g+ GsGKs++l+ l + l 
  EHU00863.1 49 QLSPGDVVVLTGASGSGKSTFLKILASLLT 78
                568999******************998876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.6
  KAP_NTPase 174 rlVvviDdLDrcetee.vlqlleavkllfslkpvvfi.lavDphvia 218
                 + V+++D+  +  +ee +l++  +++ l+   p++++ ++ D + i+
  EHU00863.1 176 PAVLLLDEVTSALDEEnSLTVQSLIRRLVAEHPMAVVwISHDVNDIQ 222
                 56777777776554440455555666665554433331555555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00025      0.12       2      25 ..      56      79 ..      55     108 .. 0.78
   2 ?    1.2   0.0      0.63     3e+02      97     154 ..     177     229 ..     160     241 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
                EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellks 25
                v++TG +G+GK+T++k +++ll  
  EHU00863.1 56 VVLTGASGSGKSTFLKILASLLTP 79
                89*************999988854 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.63
                 -EEEE---STT..GGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE CS
    NTPase_1  97 dviviDEiGkm..ElkskkfkeaveevLksekpvlavihrrkdlalveeirerkdvkvfe 154
                  v+++DE+ +   E +s ++++ ++++++++++ ++ i +      v++i++    +v++
  EHU00863.1 177 AVLLLDEVTSAldEENSLTVQSLIRRLVAEHPMAVVWISHD-----VNDIQQA--EHVLR 229
                 57777888764458899999999999999777766666665.....4555554..34444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.2e-05     0.035      23      67 ..      54      98 ..      31     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.2e-05
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkk 67
                    ++l+G++GsGK+   k l+sll+p + e  ++ + ia++  ++
    EHU00863.1 54 DVVVLTGASGSGKSTFLKILASLLTPTTGEIRFQGRDIATLRAEE 98
                  5689***********************999888888888777644 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.5e-05     0.022      15      50 ..      44      80 ..      40     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.5e-05
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                + v+++ls+  + vl G+ +sGKS++l++l  +l+ +
  EHU00863.1 44 QPVSLQLSPGdVVVLTGASGSGKSTFLKILASLLTPT 80
                557788888789********************99977 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.5e-05     0.022      26      64 ..      56      99 ..      48     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
                EEEEESTTSSHHHHHHHHHHHCS--.....--HHHHHCCHHHHH CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg.....fseeelatwraviq 64
                ++l G+s+SGKsT+lk l  l +++     f+ +++at+ra  +
  EHU00863.1 56 VVLTGASGSGKSTFLKILASLLTPTtgeirFQGRDIATLRAEEY 99
                6899***************9998887888877777777666444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-05     0.047     130     156 ..      54      80 ..      23      94 .. 0.82
   2 ?   -3.3   0.0       7.7   3.7e+03     184     195 ..     192     203 ..     152     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.7e-05
       T2SSE 130 glilvsGgTgsGKttllyallkeinks 156
                  +++++G+ gsGK+t+l +l + +  +
  EHU00863.1  54 DVVVLTGASGSGKSTFLKILASLLTPT 80 
                 5789*************9998888766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.7
       T2SSE 184 akvtfadllraa 195
                 +++t+++l+r +
  EHU00863.1 192 NSLTVQSLIRRL 203
                 344444444433 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0004      0.19       2      24 ..      56      78 ..      55      94 .. 0.86
   2 ?    0.4   0.0       1.2   5.9e+02      65      78 ..     175     188 ..     111     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0004
                EEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5  2 vlLvGppGtgKselaerlaaaln 24
                v+L G++G+gKs++ + la++l+
  EHU00863.1 56 VVLTGASGSGKSTFLKILASLLT 78
                79******************994 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.2
                 G-SEEEEESGGG-- CS
       AAA_5  65 egeilvlDEverae 78 
                  +++l+lDEv+ a 
  EHU00863.1 175 VPAVLLLDEVTSAL 188
                 56889999998775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00031      0.15       3      43 ..      54      93 ..      52     120 .. 0.64
   2 ?   -0.0   0.0       1.7   8.4e+02      66      89 ..     177     206 ..     160     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00031
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43
                 ++v+tGa  +GK+t+lk l++ l  +    + ++  d  +
  EHU00863.1 54 DVVVLTGASGSGKSTFLKILASLLT-PTTGEIRFQGRDIAT 93
                589*************998885555.333333333333333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.7
      AAA_14  66 tylflDEiqev......pewekalkslvde 89 
                  +l+lDE+  +       ++++ +++lv e
  EHU00863.1 177 AVLLLDEVTSAldeensLTVQSLIRRLVAE 206
                 578999998875544444455555555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00014      0.07      18      43 ..      48      77 ..      33      85 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00014
                H....TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 18 l....gdvilLeGdLGaGKTtlvrglakal 43
                l    gdv++L+G  G+GK+t+ + la+ l
  EHU00863.1 48 LqlspGDVVVLTGASGSGKSTFLKILASLL 77
                13456899****************999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00081      0.39       1      74 [.      56     191 ..      56     226 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00081
                 EEEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS........................................STTHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel..........gvefleisgsellsk........................................yvgesekkirel 49 
                 v+l+G  G GK+++ k +a+ l          g+++ ++ + e +++                                         v  s++ +++ 
  EHU00863.1  56 VVLTGASGSGKSTFLKILASLLtpttgeirfqGRDIATLRAEEYRQQvsycfqtpqlfgqtvydnlalpwqlrrqtppqaklkaaleSVNLSPDMLNAA 154
                 6899*****************855544332223334444444444336777777777777777777777777777777777777777444444444444 PP

                 HHHH..HHTS............TSEEEEEETGGGHHHHH CS
         AAA  50 fkea..keka............kpsilfiDEidalaksr 74 
                 ++ +     +             p +l++DE+ +   ++
  EHU00863.1 155 IEPLsgG--EkqrigllrhlqfVPAVLLLDEVTSALDEE 191
                 4443221..112234444444556777777777776665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0044       2.2      64      89 ..     176     201 ..     145     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0044
     SbcCD_C  64 lrlvfLDEAFsklDeesiatllelle 89 
                 +++++LDE  s lDee++ t+ +l++
  EHU00863.1 176 PAVLLLDEVTSALDEENSLTVQSLIR 201
                 78899**********99988877765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00024      0.12       1      25 [.      56      80 ..      56     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00024
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkk 25
                  ++l+G+sg GKSt+ k La+ l+ +
    EHU00863.1 56 VVLTGASGSGKSTFLKILASLLTPT 80
                  689**************99888743 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00027      0.13      16      53 ..      40      77 ..      27      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
                HHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 16 kellerllakaGraqvvGltGvPGaGkstlvealglel 53
                ++ll+ ++ +     vv ltG  G+Gkst+++ l+  l
  EHU00863.1 40 RQLLQPVSLQLSPGDVVVLTGASGSGKSTFLKILASLL 77
                788888888999999****************9988766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00023      0.11       2      47 ..      56     102 ..      55     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00023
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke 47 
                 v++ G + +GKSt+++ l    +  ++++ +  rdi + r ++ +++
  EHU00863.1  56 VVLTGASGSGKSTFLKILASLlTPTTGEIRFQGRDIATLRAEEYRQQ 102
                 899***************99867889999999999988888743333 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00039      0.19       3      28 ..      54      79 ..      52     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00039
                EEEEEESSTTSSHHHHHHHHHHHHHH CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLve 28
                 vv ltG sgsGKst  + l++ L+ 
  EHU00863.1 54 DVVVLTGASGSGKSTFLKILASLLTP 79
                6899***********99999887764 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00038      0.18      17      51 ..      54      88 ..      46     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00038
  Zeta_toxin 17 klillgGqpGAGKselaellkdelerqgnvvrldp 51
                ++++l G++G+GKs+ ++ l+  l+++ + +r+++
  EHU00863.1 54 DVVVLTGASGSGKSTFLKILASLLTPTTGEIRFQG 88
                5899**************99999886666666554 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00039      0.19       1      24 [.      55      78 ..      55     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00039
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                v+ ++g+SG+Gk+t+ + l +++ 
  EHU00863.1 55 VVVLTGASGSGKSTFLKILASLLT 78
                5779*************9999987 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0005      0.24       4      49 ..      56     101 ..      54     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSSS-- CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvviddeslgiekdsykd 49 
                 vvltG   sGKst+ k La+ l+ +  ++     +   ++ ++y++
  EHU00863.1  56 VVLTGASGSGKSTFLKILASLLTPTTGEIRFQGRDIATLRAEEYRQ 101
                 9**********************98888887777777777777765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00057      0.28      16      45 ..      49      78 ..      46     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00057
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkeiienle 45
                + +p ++++++G  gsGK+++lk +++ l 
  EHU00863.1 49 QLSPGDVVVLTGASGSGKSTFLKILASLLT 78
                667999*****************9888774 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00052      0.25       4      22 ..      55      73 ..      53     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00052
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++++G sg+GK+t++k l
  EHU00863.1 55 VVVLTGASGSGKSTFLKIL 73
                589*************988 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00067      0.32      16      35 ..      56      75 ..      46      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00067
     Pox_A32 16 lalvGgsGsGktvyLlsLlr 35
                ++l+G sGsGk ++L+ L +
  EHU00863.1 56 VVLTGASGSGKSTFLKILAS 75
                6899***********97755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 1958.65
//
Query:       EHU00864.1  [L=394]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-11   42.0  63.7    1.2e-09   37.6  55.5    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.029   14.4   0.1       0.12   12.4   0.1    2.1  1  Collar    Phage Tail Collar Domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6  55.5   1.4e-13   1.2e-09       2     339 ..      16     335 ..      15     338 .. 0.71
   2 !   15.3  15.4   7.8e-07     0.007      63     179 ..     276     390 ..     270     394 .] 0.85

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.4e-13
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga. 99 
                  l+++ls  +++ l++++   +  + g+s + +  +l+l  l+++++++  G+l+ r G r +l l  +++a+gl+l+ f+++l+++l+++v+ G+g+ 
  EHU00864.1  16 GLVQILSWGGSFYLMVVMAAPVVAETGWSQQWVYGALSLGILVSGLLAPRCGHLIARTGGRLMLALNGIVMAAGLTLMGFSHHLPVFLLAWVIIGIGMa 114
                 578999999*********99888888*998866667777777778889999***********************77777988888*************5 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                  +l+ a  a +   + ++ r+  +g+  ++  + +++  ++ +ll+++l+Wr++ +++a+++l++++   +++++  p+ +  sp+++++ +g ap + 
  EHU00864.1 115 MGLYDALFATLGTRYGGQARSAITGITLISGFCTSVVW-PATALLIHWLNWRGACFAIAALLLVSVLP--AYFYA-LPKGHLISPVKRKSAPGTAPDL- 208
                 557789999999*****777777766666555555555.66666667*******99999999999663..33333.3333333333331222333333. PP

       MFS_1 199 awkallkdpvlwillialllf.ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalglalla 295
                        + vl++ll+a+++  +++++++++ l + l +  g+s  + a+  la++ l+g +   +a+rl+d  ++   +++ +++++ l+algl+lla
  EHU00864.1 209 -------PAVLFYLLCAIFTLaSVIMTAISVQLIT-LLQASGYS--MAAA--LAISTLLGPCQ--VASRLIDMaFKGGHPIWTTFFSVGLVALGLLLLA 293
                 .......3444323333333313344444444444.38999999..8888..********766..******9987777788888888888888888888 PP

       MFS_1 296 vtssavllllvlvliGfglgfvfpsllalasdlappeeagtasg 339
                 ++  + l+ll+++++G g g+ ++   +l   ++ pe+ + ++g
  EHU00864.1 294 LF--PQLALLSMIFYGAGNGLRTIVRGTLPLMMVKPEAYAVLAG 335
                 88..7779999*******99855444444444445565555555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.8e-07
       MFS_1  63 rvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaiv 160
                 ++ ++++ l algllll++   ++ l l++ ++ G+g g+ + + ++l   ++++e  +   g+++  + +G +++pl  g++ + lg  a+ ++l+ +
  EHU00864.1 276 WTTFFSVGLVALGLLLLAL---FPqLALLSMIFYGAGNGLRTIVRGTLPLMMVKPEAYAVLAGWMARPALMGQAITPLGVGYVFATLGPKATLWLLCTL 371
                 4667788888888334443...66699****************************999999999999******************************** PP

       MFS_1 161 sllafvlfllllpeepper 179
                 +++ ++l+++l  + p + 
  EHU00864.1 372 AVINLLLVVALKKRLPAPA 390
                 ****998777766555554 PP

>> Collar  Phage Tail Collar Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.3e-05      0.12      28      44 ..     118     134 ..     109     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
                 -HHHHHHCTTTTSB.-S CS
      Collar  28 ypaLfaliGttyGgdgq 44 
                 y aLfa++Gt+yGg ++
  EHU00864.1 118 YDALFATLGTRYGGQAR 134
                 99***********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2584.84
//
Query:       EHU00865.1  [L=164]
Description: BadM/Rrf2 family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-13   49.1   0.0      1e-12   48.2   0.0    1.5  1  Rrf2      Transcriptional regulator
  ------ inclusion threshold ------
      0.044   13.2   0.2       0.12   11.9   0.0    1.7  2  VirC2     VirC2 protein


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.2e-16     1e-12       3      82 ..       2      82 ..       1      83 [. 0.91

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.2e-16
                --HHHHHHHHHHHHHHHSSTCC-.B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHH CS
        Rrf2  3 lsskteyalhallyLakeeeeep.vsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvra 82
                l+ ++  al+++l  a  e+ ++  +s+ +a   + +ps+++k++  L++ g++ s+ G+ G + L +p++eItl d++  
  EHU00865.1  2 LDYRFPTALQMVLSVAVAEQMGKrSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDIYVS 82
                56688999****99988776665599999*************************************************975 PP

>> VirC2  VirC2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.17   1.5e+03     104     122 ..       2      20 ..       1      27 [. 0.81
   2 ?   11.9   0.0   1.3e-05      0.12       6      80 ..      79     150 ..      74     153 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.17
                 TTS-HHHHHHHHHHHHHHH CS
       VirC2 104 lqysaskslqmilrraldd 122
                 l+y    +lqm+l  a+++
  EHU00865.1   2 LDYRFPTALQMVLSVAVAE 20 
                 6788888999999988875 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       VirC2   6 palsvgeakrlaaarpeivhpsltrfsqdaaaprlperlgeeerrpapaaakrrdssdrqsvltvdalssatape 80 
                   +sv + k+l aarp++    l  +            ++e e+ +++ +akr+ +   + ++t d+ + ++ pe
  EHU00865.1  79 IYVSVTDDKKLWAARPDVAPRCLVSANLC---WYFKSIAEEAEQASLAVLAKRTVADALNELKTHDTSNCTAVPE 150
                 5689*************875555443332...23333445677888999****9999999************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1158.62
//
Query:       EHU00866.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.0    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.1   0.0  4.7e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU00866.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.7e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00866.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00866.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00866.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00866.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00866.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00866.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00866.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00866.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00866.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00866.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU00866.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU00866.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00866.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00866.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU00866.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00866.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00866.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00866.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU00866.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00866.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00866.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00866.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00866.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00866.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00866.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00866.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00866.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00866.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00866.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU00866.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00866.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00866.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.75u 0.32s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 3388.25
//
Query:       EHU00867.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHU00867.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 867.88
//
Query:       EHU00868.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00868.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00868.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00868.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00868.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 824.11
//
Query:       EHU00869.1  [L=220]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-13   49.2   0.0    6.2e-13   49.0   0.0    1.2  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   3.5e-17   6.2e-13      39     192 ..       2     143 ..       1     195 [. 0.80

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 3.5e-17
                      ...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHHHHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B CS
  MethyltransfD12  39 kkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelreefnkkidaireaeeaidflylnrllfsglervnkkgnf 132
                      k+q k  ++nDin d++nly+ +i+n  ee+ik+++   ++  l ++re f  l++      +++++ ++a++f+yl +l f  + +  + g +
       EHU00869.1   2 KEQSKAEVLNDINGDIVNLYR-VIQNHLEEFIKQFK---WA--L-TSREMFKWLKDTPP---ETLTDIQRAARFYYLQKLSFGSKVEGRTFG-T 84 
                      5688999**************.**************...44..2.589*****997777...89****************997776655555.7 PP

                      ---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T.S.. CS
  MethyltransfD12 133 nvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPPYnprqy 192
                      + +   +++   + e+ l+++  +l  ++ie  d ++ +++++  + ++YlDPPY  +q 
       EHU00869.1  85 SATSPSRLNI-LRMEETLSEAWMRLHRVAIEHLDWQECMRRYDRTGTLFYLDPPYWKTQG 143
                      7777778888.889999999999********************************98543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1866.95
//
Query:       EHU00870.1  [L=78]
Description: hypothetical protein CKS_3567 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 682.57
//
Query:       EHU00871.1  [L=1051]
Description: hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1136.1   8.5          0 1135.9   8.5    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    2.4e-11   43.2  35.4    1.3e-10   40.8  13.3    2.5  2  MMPL       MMPL family
    0.00026   20.5  15.4    0.00026   20.5  15.4    2.3  2  SecD_SecF  Protein export membrane protein
  ------ inclusion threshold ------
      0.071   11.2  15.5       0.12   10.4  15.5    1.3  1  Patched    Patched family
        6.1    6.6  16.7      0.091   12.6   4.7    2.6  2  MASE5      Membrane-associated sensor


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1135.9   8.5         0         0       1    1020 [.       3    1038 ..       3    1039 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1135.9 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  +++ffi+rpifa+vl+++i ++G ++i  lP++++P++ pp vqv+++ypGa+p+v++++v++plE+a+ng+++++y++S   s+g++  t+tF  g
  EHU00871.1    3 FSRFFIDRPIFAAVLSVLIFMTGLIAIPLLPISEYPDVVPPSVQVRAEYPGANPKVIADSVATPLEEAINGVENMMYMKSVAgSDGVLVTTVTFRPG 99  
                  689********************************************************************************************** PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+d+A++qvqnr+++a+  LPe+v++ gi+ +k s + +lv+++ s++++++  +lr++a  ++kd+L+r++GVg++q++G+ e+a+r+wldp+k+
  EHU00871.1  100 TDPDQAQVQVQNRVAQAEARLPEDVRRLGITTQKMSPTLTLVVHLFSPGSTYDSLYLRNYATLKVKDELARLPGVGQIQIFGAGEYAMRVWLDPNKV 196 
                  ************************************************************************************************* PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  a+ glt++dvvsa++eqnv+v+aGql      ++++  l+i++qg+l++++++++ii+k  +dgs vrlrDvA++e+ga  ++l++++n+k+av+++
  EHU00871.1  197 AARGLTAADVVSAMQEQNVQVSAGQLgaeplkKQSDFLLSINMQGRLENEQQFGDIILKtAEDGSLVRLRDVARIEMGAGSYALRSQLNNKDAVGIG 293 
                  ******************************9888888999*******************999*********************************** PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  ++++pganai+ ++av++k++eL++ +P +v+ + +yd t fvr si+ Vv+tLlea+ Lvvlvv+lFLq++ra++ip++avP+s++gtf vl++lg
  EHU00871.1  294 IFQAPGANAIDLSNAVRAKMDELATRFPDDVKWAAPYDPTVFVRDSIKAVVQTLLEAVFLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLG 390 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  fslN+l+LfgLvlAiG+vvDdAiVvvEn+er++e+ g++p++aa+++m+e+ g+++aialvl+avf+P++fl+Gv+G++++qfa ti++++++s++ 
  EHU00871.1  391 FSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEM-GLSPKAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFATTIAISTVISAIN 486 
                  ***********************************.************************************************************* PP

                  HHCCHHHHHHHHS---STT-CT..........SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEE CS
    ACR_tran  478 altltPalcallLkerkeekek..........kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvts 564 
                  +ltl+Pal+a+lLk +++ k++          ++fr fnr+f+++ ++Y+ +++k lr+r  v  v+l+ll++  ++f  +p  f+P +d+ +l+  
  EHU00871.1  487 SLTLSPALAAMLLKDHQAAKDRptrlidwlfgWIFRPFNRFFHRTAHGYESMVAKTLRRRGAVFGVYLMLLAGAGWMFHAVPGGFIPTQDKLYLIGG 583 
                  ********************99*********99**************************************************************** PP

                  EE-STTB-HHHHHHHHHHHHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGG.SHHHHHHHHHHHCTTSTSSEEEEEETTSS CS
    ACR_tran  565 vqlppgvsleqtqkvlkqvekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeek.svealierlrkelkkipganvellapiql 660 
                  v++p+g+sl++t +v++q+++i  + + v++++a+ G++  ++t+ pns+ vf  Lkp +erk      ++++ + ++++++ i++   + + p+++
  EHU00871.1  584 VKMPEGSSLARTDEVIRQMSEIGLQTEGVAYAVAFPGLNALQFTNTPNSGTVFFGLKPFSERKRTAAeINADINADINAKIARIQQGFGFSIMPPPI 680 
                  ****************************************999*******************98776256678889********************* PP

                  CCCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEE CS
    ACR_tran  661 reletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrr 757 
                   +l++ sg ++ +q+ ++g ++ aL++a + l+ a+ + p+++   s++q+++pql+v++dr+ka+  Gv++ d ++tl+t+lg+syvndf++ gr+
  EHU00871.1  681 LGLGQGSGYSLYVQD-RAGLGYGALQTAINTLSGAVMQTPGMHFPISSYQANVPQLDVQVDRDKAKVQGVALTDLFSTLQTYLGSSYVNDFNRFGRT 776 
                  ***************.********************************************************************************* PP

                  EEEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HH.HHHHHHHHHCTT..SSTTEEEEEEHH CS
    ACR_tran  758 vkvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdsls.eaeeavekiakkvklpegvtiewtgq 853 
                   +v+ +++ ++r s+ed+++l+ rn+ g+mvp++++++i+ ++gp+ + r+ng++++ + g++ +++++s +a+ + e++  +  lp+g++iewt  
  EHU00871.1  777 WRVMAQADGEFRDSVEDIANLRTRNDRGEMVPIGSMVHITTTYGPDPVIRYNGYPAADLIGDADPRVLSSaQAMRQLEAMSGQ-LLPNGMNIEWTDL 872 
                  ***************************************************************99987653899999999999.9************ PP

                  HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC CS
    ACR_tran  854 aeqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegks 950 
                  ++q+   +n++li++++a+ll flvLaalyes+  pl+++l+vP+++++all+++l+g +++v++qvGl++l+Gla+kNail+vefa+el+  +gk 
  EHU00871.1  873 SYQQATQGNTALIVFPVAVLLAFLVLAALYESWTLPLAVILIVPVTMLSALLGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARELEM-QGKG 968 
                  *******************************************************************************************9.9999 PP

                  HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  951 leeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  + +a+lea++ RLrPi+MT++a+i G +PL+l++ga +e++   g++v++G++ +t+++L+l+Pv+Yv +
  EHU00871.1  969 IVDAALEACRLRLRPIVMTSIAFIAGTIPLILGEGAAAEVRGVTGVTVFSGMLGVTLFGLFLTPVFYVAL 1038
                  *******************************************************************987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8  13.3   3.6e-14   1.3e-10     147     306 ..     347     502 ..     332     532 .. 0.80
   2 !    7.6  14.2   0.00043       1.6     139     299 ..     876    1035 ..     841    1048 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.6e-14
        MMPL 147 lievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeavirava 245
                 l+e+v lvv++vi  + ++   a ++pll v vs++ ++++     +llg+ l+t +l +  vl+i++ +D a+ +v      ++ g + ++a+ +a++
  EHU00871.1 347 LLEAVFLVVLVVI--LFLQTWRASIIPLLAVPVSVVGTFSV----LYLLGFSLNTLSL-FGLVLAIGIVVDDAIVVVENVERNIEMGLSPKAAAHQAMR 438
                 4455555555555..55678999****************99....5677888888776.688999********************************** PP

        MMPL 246 stgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAllvllGraa 306
                  + + ++a +l++++ ++ +++   ++ ++ +q++++ia++ ++++  +lTl PAl+++l +  
  EHU00871.1 439 EVSGPIIAIALVLCAVFVPMAFlsgVTGQFYKQFATTIAISTVISAINSLTLSPALAAMLLKDH 502
                 ************9999888777211457899***************************987664 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00043
        MMPL  139 dasdrdlk.lievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaage 234 
                  +a++ +++ ++  v++++++++L+ +y S   +l ++l v v +l al    ++      + +++ ++   v+l++ +   a+l+v   re   +g+
  EHU00871.1  876 QATQGNTAlIVFPVAVLLAFLVLAALYESWTLPLAVILIVPVTMLSALLG--VWLTG---GDNNVFVQVGLVVLMGLACKNAILIVEFARELEMQGK 967 
                  44455555045569*******************************99877..55544...5677778888899999999*************99**9 PP

        MMPL  235 dreeaviravastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAll 299 
                     +a+ +a +   + +++  + +++ ++ L +   a  +v + +Gv++  G+l ++l  l l+P + 
  EHU00871.1  968 GIVDAALEACRLRLRPIVMTSIAFIAGTIPLILgegAAAEVRGVTGVTVFSGMLGVTLFGLFLTPVFY 1035
                  9999*************************998733355666666788888888888887777777655 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5  15.4   7.2e-08   0.00026      33     187 ..     343     499 ..     333     501 .. 0.75
   2 ?   -1.3   5.4      0.34   1.2e+03      31     171 ..     878    1019 ..     868    1034 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.2e-08
                 HHHHHHHH.HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHH CS
   SecD_SecF  33 avlallia.lvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnq 130
                 +v+ ll a ++++l+++ +   wr  +  ++a+   v+ t +vl llg+ ++  ++ +l   iG  v+d +vv + v+ n++     + k ++ +++ +
  EHU00871.1 343 VVQTLLEAvFLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEM--GLSPKAAAHQAMRE 439
                 333333330344444445555677777778888888999999**************************************877..67778888888887 PP

                 HHHHHHHTTHH.HHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHHH CS
   SecD_SecF 131 tLtrtiltslt.tllvvvallllgg...dslkdfalallvGlivgtyssifiasplllllk 187
                      i++++  +  v v + +l g   +  k+fa+++ +  ++ +++s+ ++ +l+++l 
  EHU00871.1 440 VSG-PIIAIALvLCAVFVPMAFLSGvtgQFYKQFATTIAISTVISAINSLTLSPALAAMLL 499
                 665.55555441444445555554445599***********************99999886 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.34
                  HHHHHHHHH...HHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHH CS
   SecD_SecF   31 ekavlalli...alvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkei 123 
                  +++  al++   a++l ++++a  +e w ++la+i+ +   ++ ++  + l+g + ++ + ++l +++G   ++ +++ +  re   + + + + ++
  EHU00871.1  878 TQGNTALIVfpvAVLLAFLVLAALYEsWTLPLAVILIVPVTMLSALLGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFAREL--EMQGKGIVDA 972 
                  55555555411155555566777776478888877776666666666677888999999999****************9999997..4556777778 PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTT CS
   SecD_SecF  124 inlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivg 171 
                  + ++    L   ++ts+  +++  + l+lg+++ +++  +  v +++g
  EHU00871.1  973 ALEACRLRLRPIVMTSIA-FIAGTIPLILGEGAAAEVRGVTGVTVFSG 1019
                  888888888877777776.55555556677776666665555555555 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  15.5   3.3e-05      0.12     658     809 ..     342     498 ..     330     500 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.3e-05
     Patched 658 stiqnivlallcmfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekd..dakeRvvealeal 754
                 +++q+++ a++++++v +lf++   ++++  l++    +g++ +l l g  L  +s+  ++++iG  vd +  +  +  r+ +   ++k+ + +a+ ++
  EHU00871.1 342 AVVQTLLEAVFLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEMglSPKAAAHQAMREV 440
                 68999999********************99999998899******************************88777777777766699************* PP

     Patched 755 gwPvvqgalSTilgvlvLlf...vdsymvqvFfktvvLvvvigllHgLlilPillslf 809
                   P++  al   +  + ++f   v     + F+ t+ ++ vi+++  L + P l +++
  EHU00871.1 441 SGPIIAIALVLCAVFVPMAFlsgVTGQFYKQFATTIAISTVISAINSLTLSPALAAML 498
                 *******997766666666622267777889*********************998876 PP

>> MASE5  Membrane-associated sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   4.2       0.4   1.4e+03      42      97 ..     340     393 ..     330     409 .. 0.76
   2 ?   12.6   4.7   2.5e-05     0.091      81     162 ..     865     948 ..     843     961 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.4
       MASE5  42 eaaliallllsllllalalilsrqpealslslllvlllllsllWallgyylltsea 97 
                   a++++ll  ++l++l++il  q + +s  ++ +l++ +s++  ++++yll ++ 
  EHU00871.1 340 IKAVVQTLLEAVFLVVLVVILFLQTWRAS--IIPLLAVPVSVVGTFSVLYLLGFSL 393
                 56789999999999999999999999665..8888888888888888777776664 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.5e-05
       MASE5  81 lsllWallgyylltseaqlplvepLldiLlltaliALYpevrl..llafvlPllltslvarvllkpeieiffllavvilllill 162
                 +++ W  l+y  +t  ++  +v+p+ ++L + +l+ALY ++ l   ++ ++P+ ++s++ +v+l  + + +f+ + +++l+ l+
  EHU00871.1 865 MNIEWTDLSYQQATQGNTALIVFPVAVLLAFLVLAALYESWTLplAVILIVPVTMLSALLGVWLTGGDNNVFVQVGLVVLMGLA 948
                 567799999999999999999*****************9886611556689**************9998888887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.40
# Mc/sec: 7820.23
//
Query:       EHU00872.1  [L=383]
Description: RND multidrug efflux membrane fusion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-19   67.8   0.0    6.4e-17   61.1   0.0    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
    2.1e-16   59.8   1.6    3.8e-16   59.0   1.6    1.4  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    2.4e-11   44.3   0.2    8.4e-07   29.7   0.0    3.2  3  HlyD_3           HlyD family secretion protein
     0.0024   17.7   0.0       0.05   13.5   0.0    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.032   13.0   0.0        0.5    9.1   0.0    2.0  2  HlyD_2           HlyD family secretion protein
      0.044   13.4   0.1      0.081   12.5   0.1    1.4  1  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   2.1e-20   6.4e-17       1      50 []      63     112 ..      63     112 .. 0.97
   2 ?    3.3   0.0     0.024        71       4      28 ..     174     198 ..     172     209 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 2.1e-20
  Biotin_lipoyl_2   1 evvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      e+v++ ++vsG ++++n ++G++Vk+G+vL+++D+r +++al+qa a la
       EHU00872.1  63 ESVQLRPRVSGYITTVNYHEGDEVKKGQVLFTIDDRSYRTALDQARASLA 112
                      79********************************************9875 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.024
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGd 28 
                       ++ap++Gr ++  ++ G  V aGd
       EHU00872.1 174 RVTAPIDGRASRAMITAGNLVTAGD 198
                      589*********************9 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   1.6   1.3e-19   3.8e-16      19     214 .]      64     290 ..      54     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.3e-19
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLael....yspelvaaqeeyllalkakkklkkke.................lleaarerLrllgvseeqi 96 
                  +++ +rv+G++++++ + +gd+VkkGq L+++    y + l +a++ +  a+++++ +++++                 + ++a++   + +v++++ 
  EHU00872.1  64 SVQLRPRVSGYITTVNYH-EGDEVKKGQVLFTIddrsYRTALDQARASLARARSQASLTRSESartekllgtqavsremwEQRRASASQAQADVQAAE- 160
                 46789*************.*************955445667778888888887755544444467778999999977777555666666677777666. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX....XXXXXXXX.....XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  97 aelektgkvqktvtvkapisGvVteknvreGqyvqpgdt...lftiadlstVWveaevyeqql....alvkvgqk.....vevtvealpgktfeGkvdy 183
                 ++++  +       v+api+G   + +++ G+ v++gd+   l t+ + +++ v+++v e+ +    a  ++gq+     ve+ ++  +g   +G+vd+
  EHU00872.1 161 SAVAMAQLNLDFSRVTAPIDGRASRAMITAGNLVTAGDSasvLTTLVSQDKMVVYFDVDETTFlhyqAMARQGQQrhalpVEIALAGEQGYPHRGNVDF 259
                 55666666667789********************998765559999999*********997642222677888854444489999999999******** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 184 iyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 ++ +++++t t+++R++ldN+++ + pg+fA
  EHU00872.1 260 LDNQLNASTGTIRMRAQLDNHQRIFTPGLFA 290
                 *****************************98 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00019      0.56       2      33 ..      67      98 ..      66     121 .. 0.82
   2 !   29.7   0.0   2.8e-10   8.4e-07       2     104 ..     175     285 ..     174     287 .. 0.86
   3 ?   -2.6   0.0       3.1   9.3e+03      81     106 .]     312     336 ..     299     336 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
      HlyD_3  2 lrApvdGvvvelnveegevvqagdelleiipp 33
                lr  v+G ++ +n+ eg+ v +g++l++i + 
  EHU00872.1 67 LRPRVSGYITTVNYHEGDEVKKGQVLFTIDDR 98
                67789************************873 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 2.8e-10
      HlyD_3   2 lrApvdGvvvelnveegevvqagde...lleiippdtllveakvpaa...dlgsik.....kkgqkvtlkldqgsdytlkgkierisptvdaktgaykv 89 
                 ++Ap+dG+ + + +++g+ v+agd    l +++ +d++ v++ v+++   + + ++      +  +v++ l   ++y+ +g+++ ++   +a+tg++++
  EHU00872.1 175 VTAPIDGRASRAMITAGNLVTAGDSasvLTTLVSQDKMVVYFDVDETtflHYQAMArqgqqRHALPVEIALAGEQGYPHRGNVDFLDNQLNASTGTIRM 273
                 89**********************99989999999*******999873333445556667778889******999************************ PP

      HlyD_3  90 evslenpekksiplk 104
                 +++l+n    +  ++
  EHU00872.1 274 RAQLDNH---QRIFT 285
                 *****98...55555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.1
      HlyD_3  81 daktgaykvevslenpekksiplkpG 106
                 + ++++y + v+ + +  ++ ++kpG
  EHU00872.1 312 TDQDRKYVYIVDAQGK-AQRRDIKPG 336
                 5556655555555544.457777776 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05      0.05      49      73 .]      71      95 ..      64      96 .. 0.57
   2 ?    1.4   0.0     0.095   2.8e+02      11      35 ..     183     202 ..     173     221 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                   SSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 49 kaGvvkeilvkeGdtvevgdllaki 73
                   ++G+++ + + eGd+v+ g++l++i
     EHU00872.1 71 VSGYITTVNYHEGDEVKKGQVLFTI 95
                   4555555555555555555555554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.095
                    EEEE.ECSESSSTTCEE-TTSEEEE CS
  Biotin_lipoyl  11 sveegvvevlvkvGdkVkagqvlae 35 
                      +      ++ +G  V+ag++  +
     EHU00872.1 183 ASR-----AMITAGNLVTAGDSASV 202
                    333.....56666666666665433 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.028        85      77     103 ..      78     104 ..      49     124 .. 0.78
   2 ?    9.1   0.0   0.00017       0.5     339     373 ..     300     334 ..     297     345 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.028
      HlyD_2  77 yfvkeGdkvkkgkkvaeiqkseadekl 103
                   ++eGd vkkg+ +++i + +    l
  EHU00872.1  78 VNYHEGDEVKKGQVLFTIDDRSYRTAL 104
                 457899999999999999887766554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00017
      HlyD_2 339 ieGlkiPkdsivekdgkkGVYvvdesgvakFkeik 373
                  + l i  +++ + +++k VY+vd +g+a+ + ik
  EHU00872.1 300 FNALLIDDKAVLTDQDRKYVYIVDAQGKAQRRDIK 334
                 57899************************988888 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.7e-05     0.081      24      96 ..     147     234 ..     122     240 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
                      HHCCH---SSHHHHHCCHHHCCHHHCHHHHHHHHHHHHHHCTHHHHT..................TSEEEEEE--BTTTEEHHHHHHHCHH CS
  Acid_phosphat_B  24 vetnnsdfktaelaeqvkevtieqyssdskavvdqaynsakeaelka..................dkkdavvfDiDeTvLsnspYqkyqgl 96 
                      + +++++++++  +++v   ++ q + d ++v++ +   a+ a ++a                  + k++v fD+DeT + +++  + qg+
       EHU00872.1 147 ASASQAQADVQAAESAV---AMAQLNLDFSRVTAPIDGRASRAMITAgnlvtagdsasvlttlvsQDKMVVYFDVDETTFLHYQAMARQGQ 234
                      33333344443333333...33666666666666666666655555556666667777888899999***********9977766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2986.86
//
Query:       EHU00873.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00873.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 932.24
//
Query:       EHU00874.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-98  327.4   4.4    2.4e-97  325.8   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    8.1e-15   54.9   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.6e-11   44.8   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.023   13.9   1.7      0.042   13.0   1.7    1.3  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.028   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.031   12.8   6.9      0.056   12.0   6.9    1.4  1  FUSC             Fusaric acid resistance protein family
      0.056   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
      0.071   13.0   0.6        9.2    6.2   0.0    3.0  3  UME              UME (NUC010) domain
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.9    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.2    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  325.8   0.0  2.8e-100   2.4e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU00874.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 325.8 bits;  conditional E-value: 2.8e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00874.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+ H+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00874.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMTHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00874.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00874.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00874.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU00874.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00874.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU00874.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00874.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00874.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     343     446 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU00874.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00874.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788899988888887766664444444444432 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00874.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU00874.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU00874.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    6.2   0.0     0.011       9.2       8      40 ..     340     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU00874.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU00874.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.011
         UME   8 giltrlseklndshgkkslaekkraikaleeli 40 
                 + +t+  +k++d+h +++++   +a+k +++l 
  EHU00874.1 340 ACMTHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 579**************************9985 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU00874.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU00874.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00874.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU00874.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00874.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU00874.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU00874.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00874.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU00874.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU00874.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00874.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00874.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                     1023  (0.0570584); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.38
# Mc/sec: 4095.51
//
Query:       EHU00875.1  [L=76]
Description: hypothetical protein CKS_3467 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.47
# Mc/sec: 486.97
//
Query:       EHU00876.1  [L=254]
Description: short-chain dehydrogenase/reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-75  252.9   0.5    3.2e-75  252.7   0.5    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.2e-59  201.1   1.3    1.4e-59  200.8   1.3    1.0  1  adh_short        short chain dehydrogenase
      3e-16   59.9   1.2    3.9e-16   59.5   1.2    1.1  1  KR               KR domain
    0.00015   21.7   1.4    0.00029   20.8   1.4    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00021   21.5   1.1    0.00035   20.8   1.1    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00054   20.0   0.2    0.00096   19.2   0.2    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00078   19.0   0.4      0.026   14.0   0.3    2.5  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0093   15.3   0.3      0.015   14.6   0.3    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.034   14.6   0.8      0.062   13.8   0.8    1.4  1  NAD_binding_7    Putative NAD(P)-binding
        0.1   12.2   0.1       0.16   11.6   0.1    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.7   0.5   1.8e-78   3.2e-75       1     234 []      13     245 ..      13     245 .. 0.95

  Alignments for each domain:
  == domain 1  score: 252.7 bits;  conditional E-value: 1.8e-78
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE...EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae...vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga sgIG+a Ak++aeeGa+vvl+ + +++   +e++a++l+ +   v  cDV++ +qv+al+++v+ek+g +D+lvnnagi  +  g+++e++ ++
    EHU00876.1  13 GAGSGIGAASAKRFAEEGASVVLVGRTRDK---LEKVAAQLSGQdhmVADCDVAEADQVQALASRVEEKYGCVDVLVNNAGIIVQ--GRIHEIELAD 104
                   889**************************9...444444444222348*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   +++ ++v+l ++f+++++++p l+k +g++vn+ssv++  + ++ ++y+aaK+a+ ++tr+lA+++g +g+RvNa++pg++ T++++g+k+ ++lle
    EHU00876.1 105 WKKLMSVDLDGVFHCVHYFMPaLLKTRGNVVNISSVSGLGGDWGMSVYNAAKGAITNFTRSLAMDYGTDGVRVNAICPGFTFTDLTEGVKNDQALLE 201
                   *********************999999********************************************************************** PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   ++ +r+pl+r+g+pe++a+a++f+asd+a+yitG++l vDgGlt
    EHU00876.1 202 RFYDRIPLRRAGEPEDIADAIAFIASDDARYITGANLPVDGGLT 245
                   ******************************************97 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.8   1.3   7.9e-63   1.4e-59       1     193 [.       7     196 ..       7     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 200.8 bits;  conditional E-value: 7.9e-63
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+v+vtGa+sGIG a ak++a+eGa+vv+v+r+ +kle+va++l    ++ +++ +Dv+++++v+al +++++k+g +dvLvnNAGi  +g ++e++ +
  EHU00876.1   7 KIVVVTGAGSGIGAASAKRFAEEGASVVLVGRTRDKLEKVAAQLSG--QDHMVADCDVAEADQVQALASRVEEKYGCVDVLVNNAGIIVQGRIHEIELA 103
                 79******************************************95..6899*********************************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 +w+++++v l gvf++++ ++pa+l + +G++vn+sSv g+ +  g+++Y A+K+a++ +trsla+++ ++g+rvna++PG++ Td+++ ++++
  EHU00876.1 104 DWKKLMSVDLDGVFHCVHYFMPALL-KTRGNVVNISSVSGLGGDWGMSVYNAAKGAITNFTRSLAMDYGTDGVRVNAICPGFTFTDLTEGVKND 196
                 ***********************99.99***********************************************************9988776 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   1.2   2.2e-19   3.9e-16       3     162 ..       9     165 ..       7     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.2e-19
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +++tG+  g+G + a+  ae+ga+ +vl++R+   +++ ++  a+l+  g + +v+++Dv+++d+v+al ++++++ + +   ++ Ag++ ++ + e +
  EHU00876.1   9 VVVTGAGSGIGAASAKRFAEEGAS-VVLVGRT---RDKLEKVAAQLS--GQDHMVADCDVAEADQVQALASRVEEKYGCVDVLVNNAGIIVQGRIHEIE 101
                 68********************95.899****...233333445554..6677889******************************************* PP

                 HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                  +d++++++  ++G+ +  +++ +   ++   +v +SS++gl g  g + Y aa   +  + ++
  EHU00876.1 102 LADWKKLMSVDLDGVFHCVHYFMPallKTRGNVVNISSVSGLGGDWGMSVYNAAKGAITNFTRS 165
                 ***************99777777757777889**********************9888877665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.4   1.6e-07   0.00029       2      70 ..       9      78 ..       8     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
                EEEE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEE CS
     3HCDH_N  2 vaviGaGt.mGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisft 70
                v v GaG  +Ga  a+ fa++g +Vvlv +++++lek++++++ + + ++    +++++v+a+++r++ +
  EHU00876.1  9 VVVTGAGSgIGAASAKRFAEEGASVVLVGRTRDKLEKVAAQLSGQDHMVADCDVAEADQVQALASRVEEK 78
                779999977**********************************999998888999999999999999855 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.1     2e-07   0.00035       1      77 [.       9      89 ..       9     100 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2e-07
                     EEEE--S.HHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHH...HTTS....SEEEE-S CS
  Sacchrp_dh_NADP  1 vliiGaG.svGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaal...lkeg....dlvvnls 77
                     v++ GaG ++G a a+  a+++     +++++r+++kle++aa+++g+++  + +d+++ ++ ++al   ++e+    d++vn +
       EHU00876.1  9 VVVTGAGsGIGAASAKRFAEEGA---SVVLVGRTRDKLEKVAAQLSGQDHMVADCDVAEADQ-VQALasrVEEKygcvDVLVNNA 89
                     68889962699999999999987...5******************99998888888888777.5555222666645555555544 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   5.3e-07   0.00096       9      63 ..       3      57 ..       1      76 [. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.3e-07
                  ..TT-EEEEES-SH.HHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EE CS
  Shikimate_DH  9 slkekkvlliGaGe.maelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiea 63
                  ++++k v++ GaG  ++   ak ++++g+  vv ++Rt+++ +++a +l+g++  +
    EHU00876.1  3 RFTGKIVVVTGAGSgIGAASAKRFAEEGAS-VVLVGRTRDKLEKVAAQLSGQDHMV 57
                  56788899*****85788899*******99.999***************9885444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3   1.5e-05     0.026       1      62 [.       9      74 ..       9     122 .. 0.80
   2 ?    2.4   0.0     0.051        92     140     167 ..     150     177 ..     148     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfke 62
                ++VtGa   iG+a +k+++e+g  v+ + r +++ ++   +         + ++d+ +++++++l ++
  EHU00876.1  9 VVVTGAGSGIGAASAKRFAEEGASVVLVGRTRDKLEKV-AA-QlsgqdhMVADCDVAEADQVQALASR 74
                68********************8887777773333322.22.14677888889999999999988774 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.051
                 SHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
   Epimerase 140 spYaaaKlageklveayaaqyglnaiil 167
                 s Y aaK a+ + ++++a +yg++ + +
  EHU00876.1 150 SVYNAAKGAITNFTRSLAMDYGTDGVRV 177
                 79********************998766 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   8.5e-06     0.015      34      94 ..       4      62 ..       1      66 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.5e-06
                  GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SE CS
  2-Hacid_dh_C 34 lsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDi 94
                   +gk v + G+G+ IG a akr+++ g+ v+ + r+++   + e++ ++l   + ++a++D+
    EHU00876.1  4 FTGKIVVVTGAGSgIGAASAKRFAEEGASVVLVGRTRD---KLEKVAAQLSGQDHMVADCDV 62
                  68999*******76**********************88...3667788999*********98 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   3.4e-05     0.062       4      73 ..       3      76 ..       1      99 [. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
  NAD_binding_7  4 dlkgkkvlvvGgGe.vAarkvrklleagakvtvvapevkeeleelvkla.eeel..ekdlegadlviaatddre 73
                   +++gk v+v G+G+ ++a  +++++e+ga v++v  +  +  +   +l+ ++++  + d+++ad v a  ++ e
     EHU00876.1  3 RFTGKIVVVTGAGSgIGAASAKRFAEEGASVVLVGRTRDKLEKVAAQLSgQDHMvaDCDVAEADQVQALASRVE 76
                   7899*******99669*******************994333332223332333322344555555555554444 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     9e-05      0.16       1      37 [.       9      47 ..       9      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9e-05
                EEEES-SH.HHHHHHHHHHHHTHCEEEE-SCH.HHHHHH CS
        ApbA  1 iailGaGa.iGsllaakLakagadvtlilrsr.rlealk 37
                +++ GaG+ iG   a + a+ ga v+l++r+r +le++ 
  EHU00876.1  9 VVVTGAGSgIGAASAKRFAEEGASVVLVGRTRdKLEKVA 47
                578999966***********************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2165.08
//
Query:       EHU00877.1  [L=690]
Description: glycogen debranching enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-19   70.6   0.0    2.4e-19   69.4   0.0    1.6  1  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t
      1e-13   51.6   0.1    1.6e-07   31.2   0.0    3.1  3  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   2.7e-23   2.4e-19       1      84 []      15     103 ..      15     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 2.7e-23
                 TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTT..TEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT....S....CEEEE--TT- CS
      CBM_48   1 plGahvsedekgvnfrvwapnAekVslvldfnn..wdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps....g....ekklllDPya 84 
                 +lGa+++++  gvnf++++ +Ae+V+l+l++++  ++  +++l  + t+ +W+ ++pg  p g ++Y+yrv gp+    g    ++kll+DPya
  EHU00877.1  15 QLGANYDGQ--GVNFALFSAHAERVELCLYDPSgkQEIARLELP-EFTHEIWHGYVPGLQP-G-ALYGYRVYGPYdpenGhrfnPNKLLVDPYA 103
                 59****988..**********************99999999999.69**********6666.7.5**********887747788*********8 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.8e-11   1.6e-07      10      83 ..     199     285 ..     188     320 .. 0.75
   2 !   14.7   0.0   1.9e-06     0.017     138     181 ..     314     358 ..     294     421 .. 0.83
   3 !    2.5   0.0    0.0099        89     303     332 ..     503     535 ..     448     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.8e-11
                    CCCCCCCT-SCEEE-B-CE..........-S-TTTTSS-SCECCE-CC.C-..-CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk..........spqadhgYdiadytkidpe.fG..tnedlkeLiskahekgikvilDlVvNHtsdehew 83 
                    + Y+k+LG+t++ l P+              ++  gY   ++ +  ++ fG    + +  ++++ h+ gi vilD+V NHt++ +e 
     EHU00877.1 199 VGYIKSLGITSVELLPVHWfpddqhlldkGLKNFWGYNSLNFFAPATRyFGprGIQGFRDMVRAFHDAGIEVILDVVYNHTAEGSEL 285
                    56***************997788888776333567******9886555178445799*************************98886 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.9e-06
                    -TTS-BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTC CS
  Alpha-amylase 138 lkklpdLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskv 181
                    + +    nt ++ v + + d +++w e+  idGfR D    +  +
     EHU00877.1 314 TGTGNTVNTSHPRVLQMVTDSLRYWAESMhIDGFRFDLGTILGRE 358
                    45556789********************99*******98877764 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.0099
                    T...HHHHHHHHHCCCTSSSEEEEETTCCCT-- CS
  Alpha-amylase 303 a...ekklklaaillltlrGvpviYyGeEigmt 332
                    +   e++ +++++ l+ ++G+p+   G+E g +
     EHU00877.1 503 NavrERQKRNFLATLFFSHGTPMLLAGDEFGRS 535
                    145577888999999**************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5218.39
//
Query:       EHU00878.1  [L=843]
Description: malto-oligosyltrehalose synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-21   76.2   0.0    6.1e-18   65.5   0.0    3.2  3  Alpha-amylase  Alpha amylase, catalytic domain
  ------ inclusion threshold ------
        1.8    8.6   5.2        8.5    6.4   0.7    2.9  2  PilJ           Type IV pili methyl-accepting chemotaxis trans


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   6.8e-22   6.1e-18      11      99 ..      26     118 ..      23     139 .. 0.83
   2 !    5.8   0.0   0.00094       8.4     122     183 ..     200     262 ..     176     439 .. 0.69
   3 ?    0.6   0.0     0.038   3.4e+02     312     329 ..     665     682 ..     602     684 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 6.8e-22
                    CCCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--T..TSCCCHCCHHSTTSG.GGCCC CS
  Alpha-amylase  11 dYlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsd..ehewfkeslkkkgep.krdyy 99 
                    +Ylk+LG++ ++ sPif+    ++hgYd++d ++idp+ G  + +++L+s++++ g+ +i+D+V+NH++   e+ w ++ l++ + + +++y+
     EHU00878.1  26 PYLKDLGISHLYASPIFTaTKGSTHGYDVTDVNAIDPAIGGRAGFDRLVSALKAAGLGLIIDIVPNHMAAslENGWWRDVLEHGQDSrYARYF 118
                    7****************9434589*******************************************97622566777777754433355555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00094
                    SCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC.CCCCCCTTT-SEEEETTCCCTTTCCC CS
  Alpha-amylase 122 aweydekaqeyylhlflkklpdLnteneevrkelkd.vvkfwlekgidGfRlDvvkhvskvea 183
                    +w++      y  + ++ +l     e ++v ++  + +++++    +dG+R+D v+ ++  ++
     EHU00878.1 200 SWRNAAHDLSYRRFFEVTGLVGVRLEDPAVFEDAHRlILSLVHSGAVDGLRVDHVDGLADPKG 262
                    4555555556666777889999999***********5555555555*******9998887443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.038
                    HCCCTSSSEEEEETTCCC CS
  Alpha-amylase 312 illltlrGvpviYyGeEi 329
                    i+ lt + vp iY+G E+
     EHU00878.1 665 IIKLTAPSVPDIYQGSEA 682
                    6778999********996 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3      0.01        92      34      95 ..     397     460 ..     390     482 .. 0.83
   2 ?    6.4   0.7   0.00095       8.5      60     108 ..     513     566 ..     469     572 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.01
        PilJ  34 aagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpae....avraqleaveqlWqelkkpa 95 
                 ++g   +a ++++l++ +a+  ++ +a+ + +++  l  +++    av+ q ++ ++++q+l  p+
  EHU00878.1 397 TQGL--TADDQQRLQAVAADVKASAHAPDSHALDFLLRIMQGdvahAVTGQADSFRTRFQQLTGPL 460
                 4555..78899***********************999999999999**************999988 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00095
        PilJ  60 alrlgdpapgllvpae.....avraqleaveqlWqelkkpaeaalaqqddaayl 108
                 a +  d+++g  + a      +  +q++a  ++W+el +pa + la++ ++++ 
  EHU00878.1 513 ASSTHDTKRGEDARARlytltEAPQQWAACVARWRELNRPAVRSLAEGPAPEAT 566
                 444444444444444344444********************9999998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 6426.85
//
Query:       EHU00879.1  [L=595]
Description: malto-oligosyltrehalose trehalohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-19   69.8   0.1    1.6e-12   47.6   0.0    3.0  2  Alpha-amylase  Alpha amylase, catalytic domain
    7.6e-12   45.4   0.1    1.9e-11   44.1   0.1    1.7  1  DUF3459        Domain of unknown function (DUF3459)
  ------ inclusion threshold ------
       0.14   12.0   0.0        0.3   11.0   0.0    1.5  1  DUF1737        Domain of unknown function (DUF1737)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   2.7e-16   1.6e-12       1      83 [.     127     210 ..     127     230 .. 0.91
   2 !   17.2   0.0     5e-07     0.003     145     332 ..     232     438 ..     229     441 .. 0.67

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.7e-16
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCC CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehew 83 
                    G+++  i+kL+Yl e G+t i + P+ +   q   gYd    ++ + ++Gt +d+k+ i++ah  gi v+lD+V NH + + ++
     EHU00879.1 127 GTFQAAIKKLPYLAETGITMIEVLPVSQfGGQRGWGYDGVLLYAPHAAYGTPDDFKAFIDAAHGYGIAVVLDIVLNHFGPDGNY 210
                    6788889********************9777899*********************************************99887 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5e-07
                    -TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC............HCCHCCHHHHHHHHHHHTC.....CGTT-.EEEEE-TT-SCCC CS
  Alpha-amylase 145 nteneevrkelkdvvkfwlekg.idGfRlDvvkhvskveal............esngeflheftqalnetva.....srkev.mtvgEvssdased 221
                     ++ ++vr+++ ++  fwl++   dG+R D++++++ +++             +     +h  t++  ++++     +   v    +E+++d ++ 
     EHU00879.1 232 AYDVDAVRRYIAEAPLFWLQEYcLDGLRFDAIDQIEDIADKhvlteiaerirvDIPDRQIHLTTEDCRNVIFlhprtEDGGVpLFTAEWNDDFHNA 327
                    567789**************999**************87778999999999885555566666666666666655442222313446777777777 PP

                    HCCCC-CGG-SIC.ECCITTCGGGCC-CTS.TTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTT...HHHHHHHHH CS
  Alpha-amylase 222 lrvyttearlele.mvldfphldvaqkaki.keqlksisakklkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaea...ekklklaai 312
                      v +t + + +     d p  +va++ ++ +  + ++s++  +++  ++  +        v f++nHDq  +++r++ ++       ++++++++
     EHU00879.1 328 VHVFATGETHAYYkDFADQPEKRVARALAEgFVYQGEVSVQSGEKRGVDSTGQP---PVAFVDFIQNHDQ--VGNRAQGERLISlagAERTQVLLA 418
                    777777666665503334555555555555444444445554444444443333...357788999***9..455555555333555566899999 PP

                    CCCTSSSEEEEETTCCCT-- CS
  Alpha-amylase 313 llltlrGvpviYyGeEigmt 332
                     ll+++ +p  + GeE g t
     EHU00879.1 419 TLLLSPHIPLLFMGEEYGET 438
                    9999************9976 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   3.2e-15   1.9e-11       1      90 [.     504     587 ..     504     588 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-15
                 HHHHHHHHHHHH..CCCTT--CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SSCGCCS-SS---SEEEEECT--S....SSEE-TTEEEE CS
     DUF3459   1 lyrdLLaLRree..PaLadarrgglevavlgdgallvrwrlgdgrllrllaNLgdepvtlppegaagkllfsseaaraggdagrlppesvvv 90 
                 l+r+LLa+R++   P La a   +++v + ++g ++v w++   ++l++++N g+++++lp  + +g++lf++++a     a rlp +s+vv
  EHU00879.1 504 LTRSLLAIRQQSivPLLATAGGHSGQVLATAEGFVAVSWTF-PAGTLSMALNIGEQAQPLP--EIPGETLFAWPKA-----ADRLPQHSIVV 587
                 68**************************************9.99999**************..************6.....689*****998 PP

>> DUF1737  Domain of unknown function (DUF1737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     5e-05       0.3      16      49 ..     348     381 ..     344     384 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
     DUF1737  16 cerVtqaLneGWqlyGspsitfdgargvmrcgQA 49 
                 ++rV  aL+eG+  +G++s+   ++rgv   gQ+
  EHU00879.1 348 EKRVARALAEGFVYQGEVSVQSGEKRGVDSTGQP 381
                 58*******************9999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4131.74
//
Query:       EHU00880.1  [L=754]
Description: hydroperoxidase HPII(III) (catalase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.3e-177  588.2   0.0   9.1e-177  587.9   0.0    1.1  1  Catalase      Catalase
    9.4e-21   73.8   0.0    4.5e-20   71.6   0.0    2.2  2  Catalase-rel  Catalase-related immune-responsive
    1.9e-18   66.6   0.0    2.9e-18   65.9   0.0    1.3  1  Catalase_C    C-terminal domain found in long catalases
     0.0025   17.6   0.0     0.0043   16.9   0.0    1.4  1  DJ-1_PfpI     DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.9   0.0    2e-180  9.1e-177       1     382 [.      81     466 ..      81     467 .. 0.98

  Alignments for each domain:
  == domain 1  score: 587.9 bits;  conditional E-value: 2e-180
                 B-TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSS CS
    Catalase   1 ttseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadta 99 
                 tt++G++++d+qnsl+ag+rGp+ll+d++++ek++hfd+eripeR+vhA+G++ahg+F+ + +++d+tka++ls++++ tpv+vRfStv+g +gsadt+
  EHU00880.1  81 TTNQGTRIADDQNSLRAGSRGPTLLEDFIMREKITHFDHERIPERIVHARGSAAHGYFQPYCSLKDVTKAHFLSEPEQITPVFVRFSTVQGGAGSADTV 179
                 89************************************************************************************************* PP

                 SS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB..-HHH..HHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EE CS
    Catalase 100 RdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk..daam..fwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfk 194
                 Rd+rGfa+kfyTeeG +DlvgnntpvFfi+D+ kfpd++h++k+ep+++++  ++a+  fwd++sl+pe+lh+v++++sdrgip+syr+m+g+g+htf+
  EHU00880.1 180 RDIRGFATKFYTEEGVFDLVGNNTPVFFIQDAHKFPDFVHAVKPEPHNEIPqgQSAHdtFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFR 278
                 **************************************************988555566**************************************** PP

                 EE-TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE CS
    Catalase 195 lvnkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnr 293
                 l+n+eg++++v+fh+k+  g ++l ++e++kl+g+dpd+++rdL+eaie+g++pe+el +q+++ee++ k++f+ilD+Tk++pe+ vp+ +vGk++Lnr
  EHU00880.1 279 LINDEGKATFVRFHWKPLAGKASLLWDESQKLTGRDPDFHRRDLWEAIEAGDFPEFELGLQMIPEEDEFKFDFDILDATKLIPEALVPVVRVGKMVLNR 377
                 *************************************************************************************************** PP

                 --S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT.-TTGGGSGGG---..---S----TT-.....S-S---SS-S-T CS
    Catalase 294 npenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRl.GvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepnsle 382
                 np+n+Fae+Eqvaf+p+++vpG+++++D+lLqgRlfsY+dtq++Rl G+n++++p+Nrp ++++n+qr+G++r+e++++  +nYepns++
  EHU00880.1 378 NPDNFFAETEQVAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLgGPNFHEIPINRPVCPYHNFQRQGMHRMEIDTNP-ANYEPNSIN 466
                 **********************************************99**************************999988.9*****976 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0     1e-23   4.5e-20       2      65 .]     499     562 ..     498     562 .. 0.97
   2 ?   -2.1   0.0         1   4.6e+03       6      27 ..     731     752 ..     730     754 .] 0.88

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1e-23
                   HGG--SSHHHHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   2 edfddhfsQagllyrsmseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaeal 65 
                    +f +++sQ++l+++s+++ e+++++ +++felskv ++ i+er+l+h+ ++D +l+q+Va++l
    EHU00880.1 499 PSFGEYYSQPRLFWNSQTAIEQQHIIGAYSFELSKVARPYIRERVLDHLLRIDVTLAQGVAANL 562
                   57889********************************************************987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                   -SSHHHHHHHHHS-HHHHHHHH CS
  Catalase-rel   6 dhfsQagllyrsmseeekerlv 27 
                   ++f+ a +  r++s  +k+ ++
    EHU00880.1 731 NDFTAAMAEHRVWSRSQKAETI 752
                   7899999999********9887 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   6.6e-22   2.9e-18       1     150 [.     599     745 ..     599     747 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 6.6e-22
  Catalase_C   1 dglkVgiLasndseaslaqakalaaalaaegvdvtvvaeklg.......saegvnrTYstadaveFDaivvadgaeslfsakataasslfpagrplqll 92 
                 +g++V++L+s+    + +++ ++ ++l+ +gv ++++a ++g       s+ ++++T+    +  FDa++v d++ +          +l ++g++  +l
  EHU00880.1 599 KGRQVALLVSE--GVNADDVLHILQHLKTAGVHTKLLAAHMGqvsadngSQLPIDATFNGLPSLTFDAVIVPDSNMD----------ALLKSGDARYFL 685
                 69*******95..5699**********************99988754444445*********************444..........45789******* PP

  Catalase_C  93 ldayrhgKpigalGsgaealkaagisa..eepGVyvadsasealvekvkegLatfrfldR 150
                 l+ay+h K ig  G++++  +++++++  +e+G++ ad+a+ al++++++++a +r+++R
  EHU00880.1 686 LEAYKHLKVIGLSGEARRFKAQFDLDEnqQEDGIVEADNAEIALMNDFTAAMAEHRVWSR 745
                 ****************998876666554499****************************9 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.6e-07    0.0043       2      68 ..     602     668 ..     601     702 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.6e-07
                 EEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE- CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkragikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlp 68 
                 +v++l+ +gv+  ++   ++ lk ag+++++     ++v+  +G ++++da+++ + + ++Da+++p
  EHU00880.1 602 QVALLVSEGVNADDVLHILQHLKTAGVHTKLLAAHMGQVSADNGSQLPIDATFNGLPSLTFDAVIVP 668
                 799****************************************************9999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5429.03
//
Query:       EHU00881.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-44  151.2   0.0    3.1e-44  149.9   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   3.4e-48   3.1e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.4e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHU00881.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHU00881.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHU00881.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHU00881.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHU00881.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHU00881.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2269.08
//
Query:       EHU00882.1  [L=138]
Description: transthyretin-like protein precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-35  122.4   0.1    1.5e-35  122.2   0.1    1.1  1  Transthyretin    HIUase/Transthyretin family
    0.00018   21.5   0.0    0.00023   21.1   0.0    1.2  1  bMG3             Bacterial alpha-2-macroglobulin MG3 domain
    0.00055   20.3   0.1    0.00072   20.0   0.1    1.2  1  MG2              MG2 domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.025   14.6   0.0    1.5  2  Big_1            Bacterial Ig-like domain (group 1)
      0.026   14.8   0.1      0.046   14.0   0.1    1.4  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.1   4.1e-39   1.5e-35       1     110 []      29     137 ..      29     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 4.1e-39
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESSSSEEGCGB-SEEEEEEEEHHHHHHHTTS..SESCEEEEEEES.TTSEEE CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvkellaekeeleagtyklrfeteeYfekegtesffpevevvfevk.eeehyh 95 
                    +++hvL+  +G+p  g++v+le+ e+   ++ +l++++td++Gr+++l +++++ e+g yk++f+t++Y++k +++sffpe++v f+++ +e+hyh
     EHU00882.1  29 LSVHVLNLETGTPTPGISVDLEHKEQG--KWVKLSSGVTDKNGRISALFPTDKQYETGDYKVVFKTGDYYQKVQHASFFPEIPVIFHMDkSESHYH 122
                    799*******************97666..4***********************************************************677**** PP

                    EEEEEETTEEEEE-B CS
  Transthyretin  96 vPlllspfgYstYrG 110
                    +Plllsp+gYstYrG
     EHU00882.1 123 IPLLLSPYGYSTYRG 137
                    **************9 PP

>> bMG3  Bacterial alpha-2-macroglobulin MG3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.6e-08   0.00023      11      59 ..      25      76 ..      17     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.6e-08
        bMG3 11 grdkllvwvtsLdsgkPvagaeVrlld.kkge..vlaegtTDaqGvarfaal 59
                 ++ l v+v +L++g P +g++V+l   ++g+   l +g TD++G+++   +
  EHU00882.1 25 MKNPLSVHVLNLETGTPTPGISVDLEHkEQGKwvKLSSGVTDKNGRISALFP 76
                577899*******************985666533689********9875444 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1     2e-07   0.00072      26      94 ..      37     104 ..      19     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2e-07
                 TTCSB---EEEEEEEE-TTSSEEEEEEE.EE-CTTEEEEEEE--TT--SEEEEEEEEECSTTT-EEEEEE CS
         MG2  26 etlqglaklplkltirdpdgkevkelpl.atdetggaesefalpeaaklGeysvelsadsaeeslssgsf 94 
                 et+++ ++  +++++++ ++++  +l+  +td++g ++  f++ ++ ++G+y+v++++ +  ++++++sf
  EHU00882.1  37 ETGTPTPG--ISVDLEHKEQGKWVKLSSgVTDKNGRISALFPTDKQYETGDYKVVFKTGDYYQKVQHASF 104
                 55555555..8999999999999999999***************************99888888888887 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.1e-06     0.025       8      51 ..      28      74 ..      24      83 .. 0.84
   2 ?   -3.9   0.0       4.2   1.5e+04      23      32 ..     107     116 ..     106     119 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
       Big_1  8 tltatvkD.angnpvagatVtfsvsg.gals.assgtTdanGkatvt 51
                 l+++v + + g+p +g++V ++    g+ +  ssg+Td+nG++++ 
  EHU00882.1 28 PLSVHVLNlETGTPTPGISVDLEHKEqGKWVkLSSGVTDKNGRISAL 74
                56666666467***************999999***********9875 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.2
       Big_1  23 gatVtfsvsg 32 
                  ++V f +++
  EHU00882.1 107 EIPVIFHMDK 116
                 5799999886 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.3e-05     0.046       3      62 ..      30      98 ..      28     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
  CarboxypepD_reg  3 sGrVtd.asgapiagatVtvtnadtg...tvastttdadGafrlrglpp.....gtysvtvsapGyata 62
                     s +V + ++g+p +g +V ++++++g   + +s +td++G+ +  + +      g+y+v++    y + 
       EHU00882.1 30 SVHVLNlETGTPTPGISVDLEHKEQGkwvKLSSGVTDKNGRISALFPTDkqyetGDYKVVFKTGDYYQK 98
                     667888459*************988844336999******99987554467788999999977766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1072.99
//
Query:       EHU00883.1  [L=104]
Description: membrane-bound c-type lysozyme inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-16   60.0   0.0      2e-16   59.7   0.0    1.1  1  MliC      Membrane-bound lysozyme-inhibitor of c-type lysozym
  ------ inclusion threshold ------
       0.36   11.4   0.8       0.36   11.4   0.8    1.7  2  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> MliC  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   2.2e-20     2e-16       1      64 [.      31      93 ..      31      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 2.2e-20
                EEECCCEEEEEEEECTTEEEEEEECCTEEEEEEEEETSSSEEEEE..TEEEEEETTEEEEEETTTE CS
        MliC  1 YqCdsgaevtvtyiagdpsfavlrlggktltLaqavSaSGarYsa..nyewWtkGdeAtLtwgggd 64
                Y+C+   ++tvt + + ++++++ ++gk+ltL+q+vSaSGarY +  +y++W+kG+ A+++++++ 
  EHU00883.1 31 YRCGTL-PLTVTLD-NAKDQVSFIMDGKPLTLTQTVSASGARY-SdgQYVFWSKGNGAFIERNDKI 93
                99*986.*******.9***************************.4469*************99875 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   1.1         2   1.8e+04       1       3 [.       1       3 [.       1       3 [. 0.94
   2 ?   11.4   0.8     4e-05      0.36       9      18 .]       8      17 ..       5      17 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 2
      LPAM_1 1 MKK 3
               M+K
  EHU00883.1 1 MRK 3
               **9 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4e-05
      LPAM_1  9 galllLsGCs 18
                +a+++LsGCs
  EHU00883.1  8 VAMVMLSGCS 17
                8********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 889.70
//
Query:       EHU00884.1  [L=218]
Description: pyridoxine 5'-phosphate oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-23   82.2   0.0    3.4e-23   81.6   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
    1.7e-19   69.6   3.5    2.5e-19   69.1   1.6    2.2  2  PNP_phzG_C      Pyridoxine 5'-phosphate oxidase C-terminal di
  ------ inclusion threshold ------
      0.086   13.0   0.0       0.12   12.6   0.0    1.2  1  ThuA            Trehalose utilisation


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   5.7e-27   3.4e-23       2      86 ..      40     123 ..      39     125 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 5.7e-27
                     HHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESC CS
  Putative_PNPOx   2 deelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsd 86 
                     ++++++ l ++ a+++ATvde+G+P+ ++vllk+ d+r g+vf+tn  srk+++l++npr++l f +  l+r+v++ G++e++s+
      EHU00884.1  40 KQACEAQLPDPTAMTVATVDEQGQPYQRIVLLKHYDER-GMVFYTNLGSRKAQHLANNPRISLHFPWHFLERQVMVLGEVEKLSP 123
                     7889999**************************99999.*******************************************985 PP

>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.3   1.8e+03      21      31 ..      11      21 ..       8      42 .. 0.54
   2 !   69.1   1.6   4.2e-23   2.5e-19       1      43 []     178     218 .]     178     218 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.3
  PNP_phzG_C 21 lHdRfrYeree 31
                 H R  Y+r +
  EHU00884.1 11 AHLRREYTRGG 21
                59999998843 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 4.2e-23
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeedgkWkierLsP 43 
                 WgGyrv+ +++EFWqg+++RlHdRf Y+r++  ++Wki+rL+P
  EHU00884.1 178 WGGYRVKFNTMEFWQGGEHRLHDRFLYQRDN--DGWKIDRLAP 218
                 ****************************998..69*******9 PP

>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     2e-05      0.12     147     192 ..      48      90 ..      24     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                 -SE...EEEEE...............ETE...TTEEEEEE----TTS CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 147 prg.vhvlatvdestydpngadhPiaWcreydgkGrvFytalGhtee 192
                 p+  + ++atvde+     + +  i+  ++yd +G vFyt+lG  ++
  EHU00884.1  48 PDPtAMTVATVDEQG----QPYQRIVLLKHYDERGMVFYTNLGSRKA 90 
                 333578999998875....35667888899*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1543.68
//
Query:       EHU00885.1  [L=424]
Description: tyrosyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-91  306.6   0.0    2.2e-91  306.2   0.0    1.1  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
    5.5e-06   26.0   0.0    1.1e-05   25.0   0.0    1.5  1  S4            S4 domain
     0.0038   17.0   0.0     0.0093   15.8   0.0    1.6  1  S4_2          S4 domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.2   0.0   3.6e-95   2.2e-91       3     292 ..      31     328 ..      29     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 306.2 bits;  conditional E-value: 3.6e-95
                   HS--EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTT....EEEEETH CS
  tRNA-synt_1b   3 erplrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdps.kaeerklrkreevlena..ikaqlakgldpek....aevvlqs 91 
                   ++p+++y+G+dPT++ lHlG+lvpl +l ++q+agh++++l+++++++igdps ka+erkl+++e+v e++  i++q+a +ld++     a   +++
    EHU00885.1  31 QGPISLYCGFDPTADsLHLGHLVPLLCLKRFQDAGHRPVALVGGATGLIGDPSfKAAERKLNTSETVGEWVekIRKQVAPFLDFDCgansAIAANNY 127
                   6799**********************************************************************************9998889**** PP

                   HHHTTHHHHHHHHHHHTTCBHHHHHHHHHCCHHCSS.SC--BHHHHHHHHHHHHHHHHTCHS....EEEEEGGGHHHHHHHHHHHHHHHHHSTTSS- CS
  tRNA-synt_1b  92 ewlehlelaellrdlgklgslnrmlqfksvkkrlee.gegislgeftYplLqaaDilllkad....lvpgGsDQkqnielgrdlarrfnkkevfkkp 183
                   +w  +++++++lrd+gk++s+n+m+++++vk+rl++ ++gis++ef+Y lLq++D+++l++     l++gGsDQ++ni++g+dl rr++++    ++
    EHU00885.1 128 DWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRdDQGISFTEFSYNLLQGYDFACLNELhgvaLQIGGSDQWGNITSGIDLTRRLHQN----QV 220
                   ************************************99**********************999999************************9....** PP

                   EEEEET-BBSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE.ESSHHHHHHHHHCCCCHHHH CS
  tRNA-synt_1b 184 egltvplltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkp.kreaeellaeevtklvhggd 279
                   +gltvpl+t++dG+ K++K++g+ a++Ld +k+s++k++q+++++ d++v+++lk +t+ls+e+i++le++ +++    +a+ +lae+vt+lvhg++
    EHU00885.1 221 FGLTVPLITKSDGT-KFGKTEGG-AVWLDAKKTSPYKFYQFWINTADADVYRFLKFFTFLSIEEINALEEEDKNSGtAPRAQYVLAEQVTHLVHGEE 315
                   **************.********.***********************************************99888888****************** PP

                   HHHHHHHHHHHHH CS
  tRNA-synt_1b 280 lkkalaealnell 292
                      a+++ +++l+
    EHU00885.1 316 GLAAAKRITESLF 328
                   ********99998 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.9e-09   1.1e-05       3      46 ..     359     402 ..     359     404 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.9e-09
                 HHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTC CS
          S4   3 LdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgD 46 
                 L++ l+++ l++sr +Ar +I    V +NG++  d+ yr + +D
  EHU00885.1 359 LQQALVKAELVPSRGQARTMIGSNAVSLNGEKQSDAEYRFRDSD 402
                 8999***********************************99888 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06    0.0093      10      42 ..     359     391 ..     358     403 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
        S4_2  10 LgqlLKlaglvesGgeaKafiaegeVkvNGeve 42 
                 L+q L +a+lv s g+a+++i +++V++NGe++
  EHU00885.1 359 LQQALVKAELVPSRGQARTMIGSNAVSLNGEKQ 391
                 99*****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3368.02
//
Query:       EHU00886.1  [L=286]
Description: pyridoxal kinase 2/pyridoxine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-15   56.8   0.0    2.7e-15   56.4   0.0    1.1  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    3.5e-09   36.4   0.0    2.4e-08   33.7   0.0    2.1  2  PfkB          pfkB family carbohydrate kinase
  ------ inclusion threshold ------
        0.1   12.6   0.1        0.4   10.7   0.1    2.1  2  SsgA          Streptomyces sporulation and cell division prot
       0.16   12.4   0.0       0.44   11.1   0.0    1.7  2  PIN           PIN domain


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     6e-19   2.7e-15      60     241 ..      74     263 ..      42     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 6e-19
                   --SEEEE-S--SHHHHHHHHHHH.....HHTTSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHH CS
  Phos_pyr_kin  60 kvdavKiGmlasaeiievvaekl.....kkykvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkl 151
                   ++dav  G l+sae  e + + +     ++ ++ + +DPVm   +   ++++ + e   +  lp +++i PNl E+e+L++++++++e++ eaa+ l
    EHU00886.1  74 TCDAVLSGYLGSAEQGEKILDIVhqvkaANPEAWYFCDPVMGHPEKGCIVAPGVAEFHCKMALPASDIIAPNLLELEMLSERTVTSVESAVEAARLL 170
                   57888888898887666555444200133455689************************************************************** PP

                   HHTT-SEEEEEEGGS-S.SSEEEEEEEETSSEEEEEEEE---..-S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHCG-BSTSS CS
  Phos_pyr_kin 152 lklgakaVlikGghleg.eeavvtdvlydgeeveeleaerie..tknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaikealelgkg 241
                   + +g k Vlik     g ++++++ +l++ +e  +++ + ++   ++  G G+  s  +   l +g+sl+ A+++ ++ v+e + ++ e+g+ 
    EHU00886.1 171 ITQGPKVVLIKHLARAGrRSDRFEMLLVTADEAWHISRPLVDfgVRQPVGVGDLTSGLLLVDLLHGQSLQAALEHVTAAVYEVMLKTHEMGEY 263
                   ***********98765625555555666999999999999883357889*********************************99999999875 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.13     6e+02     131     194 ..      45     106 ..      31     112 .. 0.76
   2 !   33.7   0.0   5.3e-12   2.4e-08     178     284 ..     133     248 ..     119     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.13
                 SEEEEES.EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHH CS
        PfkB 131 dllyisg.llsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeEl 194
                 ++ ++ g ++++   +++++ +a++ + ++ +d +l+  lg+  +e+ +++l  ++ +k+   E+
  EHU00886.1  45 QYGHWTGtVMPASHLTDIVKGIADIDRLKT-CDAVLSGYLGS--AEQGEKILDIVHQVKAANPEA 106
                 566677777777777888888888888888.68888888887..788888888888887777776 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 5.3e-12
                 HHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE........TTEEEEEEE.SSSS..-SBGTTHHHHHHHHHH CS
        PfkB 178 lellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve........kdgelkvpavpkvk..vvDttGAGDsfvggfl 266
                 + +l+ +d++ pn  Ele l++++ +++e+a++a+  l+++g+k+v++++ ++    ++         d+ +++++ p v+  v +++G GD   g +l
  EHU00886.1 133 KMALPASDIIAPNLLELEMLSERTVTSVESAVEAARLLITQGPKVVLIKHLARAGRRSDrfemllvtADEAWHISR-PLVDfgVRQPVGVGDLTSGLLL 230
                 55689*******************************************9855543333334344444*******99.65654489************** PP

                 HHHHTTHHHHHHHHHHHH CS
        PfkB 267 aallegksleealrfana 284
                 + ll+g+sl+ al+  +a
  EHU00886.1 231 VDLLHGQSLQAALEHVTA 248
                 ************998766 PP

>> SsgA  Streptomyces sporulation and cell division protein, SsgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6   7.3e+03      46      56 ..      27      37 ..      19      45 .. 0.73
   2 ?   10.7   0.1   8.9e-05       0.4      27      50 ..     202     225 ..     193     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
                ETTEEEEEEE. CS
        SsgA 46 eGdVrvwPaer 56
                +  V+vwP ++
  EHU00886.1 27 RMGVNVWPLNT 37
                55799999875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.9e-05
                 EEEEEEHHHHHHHTTS-EEETTEE CS
        SsgA  27 vewvfaRelLaeGlrapageGdVr 50 
                   w+++R l+  G+r+p+g Gd +
  EHU00886.1 202 EAWHISRPLVDFGVRQPVGVGDLT 225
                 57********************74 PP

>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   6.4e+03      79      97 ..      61      79 ..      53     112 .. 0.68
   2 ?   11.1   0.0   9.7e-05      0.44      28      96 ..     150     234 ..     137     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
                HHHHHHHHHHHSBHHHHHH CS
         PIN 79 eeaaeialkygllpnDali 97
                ++++ ia+  +l++ Da++
  EHU00886.1 61 DIVKGIADIDRLKTCDAVL 79
                4555555555555555543 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 9.7e-05
                 S...SEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHHHHHHH.............SBHHHHH CS
         PIN  28 l...eelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaeialkyg.............llpnDal 96 
                     e+ vts+ ++ E+++ l    +k  + ++l ++  + +++++l ++a+ a+++++     g             ll+ D+l
  EHU00886.1 150 EmlsERTVTSVESAVEAARLLITQGPKVVLIKHLARAGRRSDRFEMLLVTADEAWHISRPLVDFGvrqpvgvgdltsgLLLVDLL 234
                 1346999****************999*******************************9999888877776666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2192.76
//
Query:       EHU00887.1  [L=201]
Description: glutathionine S-transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-12   45.9   0.1    7.4e-12   45.3   0.1    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    1.4e-10   41.3   0.0    2.9e-10   40.3   0.0    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.7e-09   37.9   0.0    4.8e-09   36.5   0.0    1.7  2  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.1e-09   37.3   0.3    3.4e-09   36.6   0.3    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    3.5e-09   36.8   0.0    8.9e-09   35.5   0.0    1.7  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    6.1e-07   29.6   0.1    9.4e-07   29.0   0.1    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    7.5e-05   23.0   0.1    0.00032   21.0   0.0    2.0  2  GST_N_5   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.036   14.4   0.0      0.056   13.7   0.0    1.4  1  Tom37     Outer mitochondrial membrane transport complex prot
      0.095   12.5   0.0       0.43   10.4   0.0    2.0  2  GST_C_6   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.7e-15   7.4e-12       5      93 .]     104     189 ..      92     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.7e-15
                 HHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C   5 isqilllfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 ++++ + ++++ ++ +e +++ +++++ + ++ +++el ++ +l+G ++++AD++l+ +++w+  l+l+++  +  +l++w+ r+ +rp
  EHU00887.1 104 ELHKSFSPLFRNDAPDE-YKALVRRQLEAKFAWVNGELQDKPWLMGVHFSVADAYLYVVTRWAKALNLDVS--ALSHLQQWFARVEERP 189
                 44455566666657777.****************************************************7..**************99 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.4e-13   2.9e-10      13      75 ..      10      74 ..       1      75 [. 0.91

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.4e-13
                THHHHHHHHHHTT-EEEEEEECSTTTCGGC.HHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N 13 rahrirlllaakgveyevvpldfeageeks.pellklnplgkvPaLedn.gkkltESraIleYia 75
                 + +++++l +  +++ +v++d++++ +++ +++ ++np+g+vPaL+   g++ltE  aI++Y+a
  EHU00887.1 10 CSLSPHIVLLECALDFTQVNVDLQTKLTERgDDFRQINPKGQVPALQLSeGNVLTEGAAIVQYLA 74
                5678999****************************************999**************8 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.4e-12   4.8e-09      14      74 ..      15      80 ..       9      81 .. 0.87
   2 ?   -2.7   0.0       4.3   8.5e+03      20      32 ..     127     139 ..     115     146 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.4e-12
                HHHHHHHT--EEEE---....TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHHH-GG CS
     GST_N_3 14 rlaLnekglpvevvevt....pgehdeellaknplgkvPvLe.ddgealtdSlaIidyLeelypgp 74
                +++L e+ l+++ v+v+     +e+ + ++++np+g+vP+L+   g +lt+ +aI++yL +l p++
  EHU00887.1 15 HIVLLECALDFTQVNVDlqtkLTERGDDFRQINPKGQVPALQlSEGNVLTEGAAIVQYLADLKPDR 80
                799*************94444555699***************456***************999876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.3
                 HT--EEEE---TT CS
     GST_N_3  20 kglpvevvevtpg 32 
                 ++l+ ++++v+++
  EHU00887.1 127 RQLEAKFAWVNGE 139
                 3455566666544 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.3   1.7e-12   3.4e-09       7      69 .]     125     184 ..      87     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.7e-12
                 HHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHHH CS
     GST_C_2   7 aleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWler 69 
                 +++ql+a++++++ +L d+p+l G ++++aD+ l+++  +++a        +a+++l++W++r
  EHU00887.1 125 VRRQLEAKFAWVNGELQDKPWLMGVHFSVADAYLYVVTRWAKALN---LDVSALSHLQQWFAR 184
                 899*****************************************9...5679********987 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.5e-12   8.9e-09       9      69 ..      15      75 ..       9      76 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.5e-12
                HHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  9 lialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                +i+l ++ l+++   v+l +k  e++++f ++np+g+VP+L++ +g+v++e ++I++yl++
  EHU00887.1 15 HIVLLECALDFTQVNVDLQTKLTERGDDFRQINPKGQVPALQLSEGNVLTEGAAIVQYLAD 75
                79999*******999*9999***************************************86 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   4.7e-10   9.4e-07       4      98 ..     106     197 ..     103     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.7e-10
                 HHHHHCCCC.SHCHHH.HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCC.CC-HHHHHHHHHHHTSHHHHHHHCT CS
     GST_C_3   4 hhpiaklly.dqkeea.ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaeal.kkfpklkalyervearpkikaYles 98 
                 h+ ++ l+  d    a  + k++++ +l+  +++++  l+   +++l+g ++++AD  l+ v    + ++ + ++  +l+++ +rve+rp+++a l+ 
  EHU00887.1 106 HKSFSPLFRnD----ApDEYKALVRRQLEAKFAWVNGELQ--DKPWLMGVHFSVADAYLYVVTRWAKALNLDvSALSHLQQWFARVEERPSVQAALKA 197
                 55555555322....2356788999999999999999999..899****************99999999656799******************99875 PP

>> GST_N_5  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   0.00032       1      69 [.       1      73 [.       1      77 [. 0.90
   2 ?   -1.3   0.0       1.5     3e+03      27      43 ..     130     146 ..     123     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
     GST_N_5  1 MklfvseGn....phglkvLaaakaakgkvevqvqtvnheekvvpfltrpvlpvleldsgqfLFSsnaicryl 69
                Mklf   G+    ph + +  a+++++++v++q +  + ++   +  ++ ++p+l+l +g++L   +ai++yl
  EHU00887.1  1 MKLFCKAGAcslsPHIVLLECALDFTQVNVDLQTKLTERGDDFRQINPKGQVPALQLSEGNVLTEGAAIVQYL 73
                999999996444488888889999**********99999999999999************************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
     GST_N_5  27 evqvqtvnheekvvpfl 43 
                 e + ++vn e ++ p+l
  EHU00887.1 130 EAKFAWVNGELQDKPWL 146
                 55677888888888887 PP

>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.056      25      62 ..      45      82 ..      20     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
       Tom37 25 slsptgeLPaLkdgegtwisgfdnIveylrkkseesdl 62
                ++ p+g++PaL+ +eg+ +++   Iv+yl + + +++l
  EHU00887.1 45 QINPKGQVPALQLSEGNVLTEGAAIVQYLADLKPDRHL 82
                458**********997777***********88533333 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00021      0.43      10      31 ..     138     159 ..     129     185 .. 0.79
   2 ?   -0.2   0.0      0.44   8.7e+02      26      37 ..     170     181 ..     165     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
     GST_C_6  10 elLgdkkyFfGdkPtslDAlvF 31 
                   L+dk++++G + + +DA+++
  EHU00887.1 138 GELQDKPWLMGVHFSVADAYLY 159
                 569********66*******98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.44
     GST_C_6  26 lDAlvFGhlaqi 37 
                 lD+++ +hl q 
  EHU00887.1 170 LDVSALSHLQQW 181
                 899999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1508.39
//
Query:       EHU00888.1  [L=494]
Description: di/tripeptide permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-87  293.0  22.4    4.5e-87  292.4  22.4    1.2  1  PTR2      POT family
    8.1e-18   64.5  47.7    8.1e-18   64.5  47.7    2.6  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4  22.4   5.1e-91   4.5e-87       2     388 ..      89     446 ..      88     458 .. 0.94

  Alignments for each domain:
  == domain 1  score: 292.4 bits;  conditional E-value: 5.1e-91
                 HHHHHHHHHHHHHHHHCCCCTTTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        PTR2   2 ktIllgsiiyaiGhvvlalsaipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqe 100
                 ++I+lg +++aiG++++a+s ++             +++ig+a+Ia+G G++K+n+S++++ ++e++dpr +++ F++Fy+siN+GSL+s+++tp+l+e
  EHU00888.1  89 RVIVLGVLVLAIGYALVAFSGHNVS-----------VVYIGMATIAVGSGLFKANPSSLLSTCYEKDDPRIDGA-FTMFYMSINIGSLFSMMLTPWLAE 175
                 79*******************9994...........9*************************************.************************ PP

                 TT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH--.-HHCCHCHHHHHHHHH-...H CS
        PTR2 101 nvgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldk.alsileivvegivfnim...t 195
                 ++gy ++F++++++++i+ll Fl+++rl+k+ ++k+++    f +ll+++       + + ++  ++w  +++ +++     l+ ++ gi+++++   +
  EHU00888.1 176 KYGYNVAFSLSVIGLVITLLNFLFCKRLVKDFGSKPDFAPLQFGKLLMTLA------GIVVLIALANWMLHHQAIARiL---LCLIALGIMVIFAkeaF 265
                 *********************************************977755......456889999*********9944...55555555555554459 PP

                 HTHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH.HTST-BE.SSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSCCCCHHHHHHHHH CS
        PTR2 196 kkkveevkrllrvvplflpliifwalyaQmgttlvlqa.rtmnrki.gsfeippaqlqvlnailillliPifdklvypllrkltlgltslkkiavGlfl 292
                 + k + ++r++ ++ l++++i+f++ly Qm+t+l+++a r++++++ g ++  p+q+q+ln+++i+l++Pi+++++++l++k    l ++ k+a+G++l
  EHU00888.1 266 ALKGAARRRMIVAFLLMVEAIVFFVLYMQMPTSLNFFAiRNVEHTLfG-ITFAPEQFQALNPFWIMLASPILAAVYNKLGDK----LPMPHKFAIGMVL 359
                 9*********************************************99.********************************8....78*********** PP

                 HHHHHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCT CS
        PTR2 293 aslafaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssvlatlvakate 388
                 +s+af+++ + + ++++++          +s+ wli++y l++i+el++s  gl++++++ p++++++i+g+++lt+a + ++++ +a+l+a +++
  EHU00888.1 360 CSAAFLVLPVGAKFASDAG---------IVSLNWLILSYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAVIAGKVANLMAVPEN 446
                 *******************.........9**************************************************************98775 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5  47.7   9.1e-22   8.1e-18      10     352 ..      35     434 ..      26     435 .. 0.75
   2 ?    0.7   0.2     0.023     2e+02      30      57 ..     460     487 ..     437     491 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 9.1e-22
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpag 106
                 ++++ l +++  +l ++lg+s+s   +l++ ++++   ++ ++G+l+d+ +G +rv++lg+l++a+g +l +f+ +++ +++++ +  ++g+g++ ++ 
  EHU00888.1  35 FGYYGLQAIMAVYLVRQLGMSESDSITLFSSFSALVYGLVAIGGWLGDKvLGTKRVIVLGVLVLAIGYALVAFSgHNVSVVYIGMATIAVGSGLFKANP 133
                 5677777888889************************************88****************444448789999******************** PP

       MFS_1 107 aaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............... 188
                  +l++  + k  ++   a+ ++++++++G+++ ++l ++la+ +g+ ++f +  i +++ ++ fl+  +  +   +++  +++                
  EHU00888.1 134 SSLLSTCYEKddPRIDGAFTMFYMSINIGSLFSMMLTPWLAEKYGYNVAFSLSVIGLVITLLNFLFCKRLVKDFGSKPDFAPLQfgkllmtlagivvli 232
                 **********66699*************************************99999999884333333333333333333333668889999999888 PP

       MFS_1 189 ................kgtgpaplvp...............awkallkdpvlwillialllf.....ffgfsg.lltllply.....lqevlgls...g 242
                                                          a+k   +++    +++a+ll+     ff++++ + t l ++      ++ +g++    
  EHU00888.1 233 alanwmlhhqaiarilL--------ClialgimvifakeafALKGAARRR----MIVAFLLMveaivFFVLYMqMPTSLNFFairnvEHTLFGITfapE 319
                 88876666555544440........1555533333333444456666666....555555554532234444445555555533333344444447663 PP

       MFS_1 243 lllaglllallalvgailallagrlsdrlgrrrrlllall.llllaalglallavt.........ssavllllvlvliGfglgfvfpsllalasdlapp 331
                  ++a+   ++  +++   +++++++ ++lg + ++   ++ +++l+++++++l+v           s  +l+l++ l ++g  +++++ la++++l+p+
  EHU00888.1 320 QFQAL--NPFWIMLA---SPILAAVYNKLGDKLPMPHKFAiGMVLCSAAFLVLPVGakfasdagiVSLNWLILSYGLQSIGELMISGLGLAMVAQLVPQ 413
                 47777..77777777...88899999999988888776551455555555555555899999988888888888888999******************* PP

       MFS_1 332 eeagtasglfntagslggalg 352
                 + +g+++g   ++ + +++++
  EHU00888.1 414 RLMGFIMGSWFLTTAGAAVIA 434
                 ********9996666555554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.023
       MFS_1  30 spseigllltlyalgaavaslplGrlsd 57 
                   ++ig+++++ a++++v++++l r+++
  EHU00888.1 460 VFQQIGIATAVIAVLMLVTAPLLNRMTQ 487
                 4568888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3728.57
//
Query:       EHU00889.1  [L=234]
Description: CTP synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-12   46.6   0.0      5e-12   46.0   0.0    1.2  1  GATase    Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   2.8e-16     5e-12       7     167 ..      21     204 ..      18     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 2.8e-16
                 TSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE....EEECEEEE CS
      GATase   7 dsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvv....kekekehh 101
                 +s+  +l++a+++l + +e ++i ++++  l++ ++ d++ + +G  +++ +g  ++++++ren++P+LG C G+Q ++i+++r+v       + ++  
  EHU00889.1  21 QSIPLALARAAAHLAIPIEPDWIPTPDLDDLSAVTQHDAVWLVPGSPYKNDDGVFSMLRWVRENGKPFLGSCGGFQYAVIDYARHVLgwedASHAETSE 119
                 678889************************98899**********999************************************999888733334444 PP

                 EEEEEEEETTT.................CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTEEEEEEEEETTT.EEEE CS
      GATase 102 ggtmrlgddet.................allyglknevierhrHryevnpk...elepaglevtakseddeelmeiiekknp.fvgv 167
                  g m +   ++                 a +yg   + +e    ++ vnp+   +l  +++++t ++ ++  + +i   + p +v++
  EHU00889.1 120 TGRMVIAPLSCslveqrgevtfapgsrmASAYGA-LTSDEGYHCNFGVNPAfsaALQGKNMRITSWDLNG-DVRGIELTDHPfYVAT 204
                 4444444444455566666777777766777777.66677777788888888877777779999999888.5888888888866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1875.02
//
Query:       EHU00890.1  [L=210]
Description: DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-19   70.0   0.0      3e-19   69.5   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    2.1e-07   30.5   0.0    4.4e-07   29.4   0.0    1.6  1  HHH            Helix-hairpin-helix motif
    0.00019   21.7   3.4    0.00031   21.0   3.4    1.4  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0     5e-23     3e-19       1     107 [.      34     168 ..      34     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 5e-23
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 ++++ls+q +d+++n+++++l+      tp +++++  + ++e+i+++G++++Ka+++++++ril+                                 
  EHU00890.1  34 IAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLALGVDGVKEYIKTIGLFNSKAENVIKTCRILLdqhggqvpedraalealpgvgrktanvvlntaf 130
                 6899********************5..5*********************************************************************55 PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekktkkkvekkleelle 107
                 g   ++i+vD+h+ r+++r +++   k+ ++ve+kl ++++
  EHU00890.1 131 G--WPTIAVDTHIFRVCNRTNFAPG-KNVEQVEEKLLKVVP 168
                 4..899*****************99.699******999887 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   7.4e-11   4.4e-07       2      29 ..     100     127 ..      99     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 7.4e-11
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIls 29 
                 ++g +p +r+ L+alPGVG+ktA+++l+
  EHU00890.1 100 HGGQVPEDRAALEALPGVGRKTANVVLN 127
                 7899**********************95 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   3.4   5.1e-08   0.00031       1      17 []     187     203 ..     187     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.1e-08
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    C ARkP+C+ C + DlC
     EHU00890.1 187 CVARKPRCGSCLIEDLC 203
                    ***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1561.13
//
Query:       EHU00891.1  [L=234]
Description: electron transport complex protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-59  201.0  12.5    1.5e-59  200.9  12.5    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9  12.5   8.5e-64   1.5e-59       3     173 ..       6     199 ..       4     200 .. 0.99

  Alignments for each domain:
  == domain 1  score: 200.9 bits;  conditional E-value: 8.5e-64
                 HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHT------THHHHHHHHHH CS
     Rnf-Nqr   3 killsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipkklriivfilviAalvtlvelvlkaflpslykaLgiflpL 101
                 ++l+ g++k+N +lvq+lG+Cp+lav+ +++nalg+gla+t+vl+l+n +is+ r+++p+++ri++++++iA++v  v+++++a+++ ly++Lgif+pL
  EHU00891.1   6 NLLVGGLWKNNSALVQLLGLCPLLAVTATATNALGLGLATTLVLTLTNSFISASRRWVPSEIRIPIYVMIIASVVSSVQMLINAYAYGLYQSLGIFIPL 104
                 68999********************************************************************************************** PP

                 HHS-HHHHHHHHT--------THHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSS........................-----SHHHHHHHHHHH CS
     Rnf-Nqr 102 ivvNCiilgraeafasknsvleslldglgsglGftlalvllaairellgkGtlig.......................lilagllagaFlglggl 173
                 iv+NCi+ graea+ask+s+  ++ldg++ g+G t+a+v+l++ire++g+Gtl++                       ++la+l++gaF+glg++
  EHU00891.1 105 IVTNCIVVGRAEAVASKSSIPLAALDGFAIGMGATCAMVVLGSIREIIGSGTLFNgadqllgpwakvlridvihfnspMLLAMLPPGAFIGLGMM 199
                 ********************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1980.41
//
Query:       EHU00892.1  [L=210]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-18   67.0   0.1    3.5e-18   65.9   0.1    1.5  1  FMN_bind  FMN-binding domain
  ------ inclusion threshold ------
       0.15   12.4   0.1       0.25   11.7   0.1    1.4  1  Wzz       Chain length determinant protein


Domain annotation for each model (and alignments):
>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.1   3.9e-22   3.5e-18       1      66 [.     100     187 ..     100     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 3.9e-22
                 SSSSEEEEEEEEETTTSBEEEEEEEESSS-TTTGGG.........................CTTHHHHSSEEETCTTBHHHHHHHHHHHHH CS
    FMN_bind   1 GyggtikvlvtvkdgdgtItgievlehsETpglgsk.........................avkkdggdqevDaiSGATissravkdavna 66 
                 Gy+g i++lv+  d  g++ g++v+eh+ETpglg+k                         avkkdgg  e+D+++GATi++rav++a ++
  EHU00892.1 100 GYSGAIQMLVGA-DFHGKVLGVRVIEHHETPGLGDKielrisdwinsfngkvvtgpndkafAVKKDGG--EFDQFTGATITPRAVVNATKR 187
                 9***********.999*******************999***999999988888777766555999988..9*****************998 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.7e-05      0.25       9      54 ..       2      47 ..       1      69 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHH CS
         Wzz  9 lsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkq 54
                l +++k+ ++++l++++++ + +++  + +p+ + ++q+++++  +
  EHU00892.1  2 LDTIRKNGVTLALFAAITTGVTAVVNTVTKPTVEHQTQLQQKNLLD 47
                7899************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1681.09
//
Query:       EHU00893.1  [L=352]
Description: putative inner membrane oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     8e-106  353.7  15.7     9e-106  353.5  15.7    1.0  1  NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family


Domain annotation for each model (and alignments):
>> NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.5  15.7    5e-110    9e-106       3     292 .]       6     348 ..       4     348 .. 0.95

  Alignments for each domain:
  == domain 1  score: 353.5 bits;  conditional E-value: 5e-110
  NQR2_RnfD_RnfE   3 sssphvrdkestkrimldvliallpallfgvynfglqalllilvavvvavlaEvlfaklrkkevkvt..dlsavvtglLlalilPptlplwvvvi 95 
                     +ssp++++++st +im+ v++a lp +++++y+fg+++ll++++a ++a+l+E+++ +lr+ +v+ +  d+sa++t++Ll++++P+ +p+w+vv+
      EHU00893.1   6 ASSPYTHNRRSTGNIMMLVILAALPGFAAQCYFFGVGTLLQVVLASLTALLTEAAILRLRNTPVAPQlaDNSALLTAILLGISIPSLAPWWLVVV 100
                     79**************************************************************999**************************** PP

  NQR2_RnfD_RnfE  96 gsvfaivvvKelfGGlGqNifNPAlvgrafllisfpaqmt.wva....................................DavsgatpLaalk.. 151
                     g+vfaiv++K+l+GGlGqN+fNPA+vg+++llisfp+qmt w++                                    D+vs+atpL+++k  
      EHU00893.1 101 GTVFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTsWMPpealqvikpgvldslsmiftghtlagdtlqqlqlgvDGVSQATPLDTFKtg 195
                     *****************************************998899**********************************************88 PP

  NQR2_RnfD_RnfE 152 ........saslldlflgniagsigetsalalllgglyLlvrkiiswripvsvlatvavlsllfn....llaapplfhllsGglllgafFmatdp 234
                             +     +  g +ag  ++++++ +llgg++Ll++++i+w+ip+++l++++v+++l +    +  ++pl+hl+sG+++lgafF+atdp
      EHU00893.1 196 lraghsaeQLLAQPIYSGVLAGLGWQWVNVGYLLGGVFLLWKNTIRWHIPAAMLLSLTVCATLGWllapASLNSPLIHLFSGATMLGAFFIATDP 290
                     877654431223344666889****************************************9988888866788********************* PP

  NQR2_RnfD_RnfE 235 vtspitkkGklifglliGlltvliRvfgaypeGvafaiLlmNllvplidkltrprnfg 292
                     vt+++t +G+li+g+liGll++liR fg+yp+Gvafa+Ll+N++vplid++t+pr++g
      EHU00893.1 291 VTASTTDRGRLIYGALIGLLVWLIRSFGGYPDGVAFAVLLANICVPLIDYYTQPRVYG 348
                     *******************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2757.89
//
Query:       EHU00894.1  [L=868]
Description: inner membrane iron-sulfur protein in SoxR-reducing complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-49  166.7   0.0    1.8e-48  164.2   0.0    2.4  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    4.6e-31  106.8   0.0    1.2e-30  105.4   0.0    1.8  1  RnfC_N        RnfC Barrel sandwich hybrid domain
    1.1e-09   38.8   7.7    3.2e-09   37.2   7.7    1.9  1  Fer4_7        4Fe-4S dicluster domain
    2.1e-09   37.1   0.1    4.9e-09   35.9   0.1    1.7  1  SLBB          SLBB domain
    2.4e-09   37.2   9.2    6.5e-09   35.8   9.2    1.8  1  Fer4_10       4Fe-4S dicluster domain
    1.1e-07   31.4  14.0    0.00084   19.1   1.5    2.5  2  Fer4          4Fe-4S binding domain
    8.5e-07   29.3   7.9    8.5e-07   29.3   7.9    3.0  2  Fer4_8        4Fe-4S dicluster domain
    1.2e-06   29.0  10.9    1.7e-05   25.2  10.0    3.3  2  Fer4_17       4Fe-4S dicluster domain
      5e-06   26.6  11.4    1.8e-05   24.8  10.7    2.3  2  Fer4_9        4Fe-4S dicluster domain
    1.1e-05   25.2  15.2      0.014   15.4   4.6    2.5  2  Fer4_2        4Fe-4S binding domain
    1.7e-05   24.9  11.3      0.016   15.7   1.7    2.4  2  Fer4_4        4Fe-4S binding domain
    0.00024   21.0  16.4     0.0094   16.0   3.2    2.6  2  Fer4_6        4Fe-4S binding domain
    0.00067   19.7   9.4     0.0027   17.8   9.3    2.1  1  Fer4_21       4Fe-4S dicluster domain
     0.0024   18.7  15.8      0.052   14.5   4.1    2.5  2  Fer4_3        4Fe-4S binding domain
     0.0037   17.4  10.6       0.22   11.7   0.8    3.8  2  Fer4_18       4Fe-4S dicluster domain
     0.0062   17.5  22.4      0.011   16.6   0.4    4.7  2  Fer4_16       4Fe-4S double cluster binding domain
     0.0097   16.7   9.0       0.11   13.4   0.8    3.4  2  Fer4_22       4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.039   14.6   0.0      0.079   13.6   0.0    1.5  1  NQRA_SLBB     NQRA C-terminal domain
       0.21   12.2   0.1       0.21   12.2   0.1    6.1  2  Fer4_13       4Fe-4S single cluster domain of Ferredoxin I


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   1.9e-51   1.8e-48       1     151 [.     139     283 ..     139     284 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 1.9e-51
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkkkylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaeakaa 97 
                   +++agi G+GGagfPt++Klk   +   ++li+NaaEcEP++t+D++lm++++ e+leG++i+a++l+ae+++ig++d+kpeai+al++al ++++ 
    EHU00894.1 139 IHDAGIAGLGGAGFPTATKLKGGLQ-GVNTLIINAAECEPYITADDRLMQDYAAEVLEGCRILAWVLQAERVLIGIEDNKPEAIAALKQALGGERD- 233
                   789*********************8.779*****************************************************************97. PP

  Complex1_51K  98 glldievvklagkYpaGeekaLiesltgrevprgkppadvgvvvnNveTlaavy 151
                       ++++ +++kYp+G +k+L++ ltg evp+g+  +d+gv+++Nv+T+ av+
    EHU00894.1 234 ----LQIRVIPTKYPSGGAKQLTKILTGMEVPHGGRSTDIGVLMQNVGTAWAVK 283
                   ....************************************************97 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   1.3e-33   1.2e-30       1     100 [.      14     114 ..      14     115 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 1.3e-33
      RnfC_N   1 ltfkgGvhppenkelskekpieklplpkelvlplsqhiGapakplvkvgdkVlkGqkiaeaegfvsapvhasvsGtVkaiekrlvahgsgve..avvie 97 
                 ++f+gG+hppe+k++s+ +p+++lplp+++++pl+qhiG++++++v+ gdkVl+Gq ++  +g  ++pvha++sG + ai+++++ah+sg++  ++ ++
  EHU00894.1  14 WDFQGGIHPPEMKTQSNGTPLAELPLPHRFIIPLKQHIGHEGEICVSPGDKVLRGQPLTFGQGR-MLPVHAPTSGVIDAIAQHMTAHPSGLSelCIFLT 111
                 79*************************************************************8.8************************755699999 PP

      RnfC_N  98 nDg 100
                 +Dg
  EHU00894.1 112 PDG 114
                 997 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   7.7   3.4e-12   3.2e-09       1      52 []     376     430 ..     376     430 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3.4e-12
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt...ekveidpekClgCgaCvavCPtga 52 
                 +Ci C aC++aCp++ +  + + + +g    +  +++ + C+ CgaC+ vCP+++
  EHU00894.1 376 SCIRCSACADACPANLLPQQLYWYSQGGdhdKARAHHIDGCIECGACAYVCPSNI 430
                 5****************988554444433325557789**************986 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   5.2e-12   4.9e-09       1      57 [.     296     344 ..     296     345 .. 0.98

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.2e-12
                 EEEEESS.BSS-EEEEEETT-BHHHHHHTTT-SBSS.........-EEEE-SSSSS-- CS
        SLBB   1 vVtVtGe.VkrPgnyevpigttlsdlieqaGGltddadlksvnLarlavipgGpmmgi 57 
                 vVt+tGe +++P+n++ ++gt++s+l+ q+G  + +++          vi+gGp mg+
  EHU00894.1 296 VVTLTGEaIAQPRNVWSRLGTPISHLLHQVGFHPSPGQ---------MVIMGGPLMGF 344
                 7*************************************.........8*********8 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   9.2   6.9e-12   6.5e-09       5      56 .]     373     427 ..     370     427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 6.9e-12
     Fer4_10   5 dddtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++++CirC +C +aCPa+l   + + +++  + ++a  + ++ C++cgaC+ +CP
  EHU00894.1 373 QEQSCIRCSACADACPANLlpqQLYWYSQGGDHDKARAHHIDGCIECGACAYVCP 427
                 6799*************99999999999999999********************9 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.5   8.9e-07   0.00084       7      21 ..     376     390 ..     373     392 .. 0.89
   2 !   16.9   5.2   4.1e-06    0.0039       7      22 ..     415     430 ..     412     431 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.9e-07
                 TSSS-THHHHHSTTT CS
        Fer4   7 kCigCGaCvevCPvg 21 
                  Ci+C aC+++CP +
  EHU00894.1 376 SCIRCSACADACPAN 390
                 7************97 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4.1e-06
                 TSSS-THHHHHSTTTE CS
        Fer4   7 kCigCGaCvevCPvgA 22 
                  Ci CGaC+ vCP + 
  EHU00894.1 415 GCIECGACAYVCPSNI 430
                 5************985 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   7.9     9e-10   8.5e-07       4      65 .]     376     430 ..     373     430 .. 0.81
   2 !   12.7   5.3   0.00014      0.13       4      17 ..     415     453 ..     413     533 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9e-10
      Fer4_8   4 kCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvgi 65 
                 +Ci+C+aC +aCp+    ++   +++g+  + + + ++      ++ C +cgaC+ vCp +i
  EHU00894.1 376 SCIRCSACADACPANLLPQQLYWYSQGGDHD-KARAHH------IDGCIECGACAYVCPSNI 430
                 7************777777666666666666.556666......8**************997 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00014
      Fer4_8   4 kCieCgaCqsaCp.........................v 17 
                  CieCgaC   Cp                         +
  EHU00894.1 415 GCIECGACAYVCPsniplvqyyrqekaelraidleakrT 453
                 699999999999866666654333333333222222221 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   3.9     0.001      0.95      41      60 ..     372     391 ..     355     392 .. 0.78
   2 !   25.2  10.0   1.8e-08   1.7e-05       2      60 ..     377     430 ..     376     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.001
     Fer4_17  41 ekaslCieCgeCerkCPqgl 60 
                 ++ ++Ci C  C+ +CP++l
  EHU00894.1 372 QQEQSCIRCSACADACPANL 391
                 56689999999999999987 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.8e-08
     Fer4_17   2 CiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCerkCPqgl 60 
                 Ci+C++C+++Cp +   ++    + +  + g++++  + + ++ CieCg C+++CP+++
  EHU00894.1 377 CIRCSACADACPANLLPQQ---LYWYS-QGGDHDK-ARAHHIDGCIECGACAYVCPSNI 430
                 ************9887333...23333.3466666.4779*****************98 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.6   4.9e-05     0.046      28      49 ..     370     390 ..     358     392 .. 0.70
   2 !   24.8  10.7   1.9e-08   1.8e-05       2      49 ..     377     429 ..     376     431 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-05
      Fer4_9  28 lraaseeaCigCgaCveaCpkg 49 
                 ++++ e++Ci C aC++aCp +
  EHU00894.1 370 NTQQ-EQSCIRCSACADACPAN 390
                 3333.358***********976 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 1.9e-08
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase.....eaCigCgaCveaCpkg 49 
                 C++C aC +aCpa++  ++   +    +++++     + Ci+CgaC+ +Cp++
  EHU00894.1 377 CIRCSACADACPANLLPQQLYWYSQGGDHDKArahhiDGCIECGACAYVCPSN 429
                 ***********7777744443333333333333466799************98 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   4.6   1.5e-05     0.014       7      22 .]     374     389 ..     371     389 .. 0.92
   2 !   14.9   2.9   2.2e-05     0.021       9      21 ..     415     427 ..     409     428 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
      Fer4_2   7 tdrCigCgaCvsaCPa 22 
                 +++Ci+C+aC +aCPa
  EHU00894.1 374 EQSCIRCSACADACPA 389
                 578************8 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.2e-05
      Fer4_2   9 rCigCgaCvsaCP 21 
                  Ci+CgaC  +CP
  EHU00894.1 415 GCIECGACAYVCP 427
                 6************ PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   2.5   6.9e-05     0.065       2      16 ..     375     389 ..     374     395 .. 0.91
   2 !   15.7   1.7   1.7e-05     0.016       2      17 .]     414     429 ..     413     435 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.9e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 ++Ci+C +C +aCP 
  EHU00894.1 375 QSCIRCSACADACPA 389
                 79************6 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.7e-05
      Fer4_4   2 erCigCgsCvaaCPqg 17 
                 + Ci+Cg+C ++CP++
  EHU00894.1 414 DGCIECGACAYVCPSN 429
                 56************75 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.2   9.9e-06    0.0094       6      23 ..     374     391 ..     373     392 .. 0.90
   2 !   10.0   5.4   0.00078      0.74       9      23 ..     416     430 ..     413     431 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.9e-06
      Fer4_6   6 pdkCigCgdCvrvCPega 23 
                 +++Ci C +C+++CP++ 
  EHU00894.1 374 EQSCIRCSACADACPANL 391
                 799************986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00078
      Fer4_6   9 CigCgdCvrvCPega 23 
                 Ci Cg+C+ vCP ++
  EHU00894.1 416 CIECGACAYVCPSNI 430
                 ************875 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   9.3   2.8e-06    0.0027       4      52 ..     373     427 ..     370     432 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.8e-06
     Fer4_21   4 dedkCigCgkCliaCedtsh.qai.....eidaktvlkvvedeCvGCnlCssvCP 52 
                 +e++Ci C  C+ aC+ +   q +      +d+++  ++  d C+ C  C+ vCP
  EHU00894.1 373 QEQSCIRCSACADACPANLLpQQLywysqGGDHDKARAHHIDGCIECGACAYVCP 427
                 5789************76542444687754555566666789************* PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   3.9    0.0021       1.9       1      12 [.     377     388 ..     377     390 .. 0.93
   2 !   14.5   4.1   5.5e-05     0.052       1      14 [.     416     429 ..     416     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0021
      Fer4_3   1 CtgCgaCvevCP 12 
                 C+ C+aC ++CP
  EHU00894.1 377 CIRCSACADACP 388
                 ************ PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.5e-05
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+ CgaC  vCP++
  EHU00894.1 416 CIECGACAYVCPSN 429
                 ************98 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   2.8    0.0037       3.5      71      96 ..     362     388 ..     352     400 .. 0.69
   2 !   11.7   0.8   0.00023      0.22      50      76 ..     405     431 ..     393     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0037
     Fer4_18  71 cPtgidirkGlq.leciscllcidacd 96 
                  P g ++ + +q  +ci c+ c dac 
  EHU00894.1 362 APSGTEMGNTQQeQSCIRCSACADACP 388
                 566666666666235888888888884 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00023
     Fer4_18  50 keerkekgagdcidcescvkvcPtgid 76 
                 +++ +++    ci+c++c  vcP +i 
  EHU00894.1 405 HDKARAHHIDGCIECGACAYVCPSNIP 431
                 56667788889************9986 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   1.2e-05     0.011       2      20 ..     377     395 ..     376     414 .. 0.87
   2 !   13.4   3.1   0.00012      0.12       2      26 ..     416     442 ..     415     486 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-05
     Fer4_16   2 CgtCgkCaevCPtnaikek 20 
                 C++C +Ca++CP+n + ++
  EHU00894.1 377 CIRCSACADACPANLLPQQ 395
                 **************98876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
     Fer4_16   2 CgtCgkCaevCPtnaikek..kekeie 26 
                 C++Cg+Ca vCP+n    +  +++++e
  EHU00894.1 416 CIECGACAYVCPSNIPLVQyyRQEKAE 442
                 *************98433312222222 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.1     0.019        18      76      95 ..     371     390 ..     362     391 .. 0.73
   2 !   13.4   0.8   0.00012      0.11       2      68 ..     416     487 ..     415     500 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
     Fer4_22  76 kfgesgCvGCgRCieacpvk 95 
                 + +e++C+ C  C +acp++
  EHU00894.1 371 TQQEQSCIRCSACADACPAN 390
                 55677788888888888765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
     Fer4_22   2 ClsCgaCtlvCptCsCfdvedet.....keeskegervrvwdsClleeftkvaggenvrkekkerlrqrllh 68 
                 C++CgaC++vCp+ +      ++     ++ + e++r+   ++ + ++ ++++ ++++r+ +++  +qr+ +
  EHU00894.1 416 CIECGACAYVCPSNIPLVQYYRQekaelRAIDLEAKRTLEAKARFEARQARLEREKQAREARHAEAKQRVAR 487
                 ************976543332222234544445566666666777777777777888888888888877765 PP

>> NQRA_SLBB  NQRA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.3e-05     0.079       1      46 [.     296     343 ..     296     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.3e-05
   NQRA_SLBB   1 viAlaGpavkkprlvrtrlGaslsdllage.lksg.evRvISGsVLtG 46 
                 v++l+G a+++pr v  rlG ++s ll +    ++    vI G +L G
  EHU00894.1 296 VVTLTGEAIAQPRNVWSRLGTPISHLLHQVgFHPSpGQMVIMGGPLMG 343
                 8**************************998777777888888888888 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8    0.0035       3.3       4      18 ..     375     389 ..     373     395 .. 0.91
   2 ?   12.2   0.1   0.00022      0.21       4      18 ..     414     428 ..     413     478 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0035
     Fer4_13   4 dtCiacgaCvelaPd 18 
                 ++Ci c aC++++P 
  EHU00894.1 375 QSCIRCSACADACPA 389
                 79************7 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00022
     Fer4_13   4 dtCiacgaCvelaPd 18 
                 d Ci+cgaC+ ++P 
  EHU00894.1 414 DGCIECGACAYVCPS 428
                 59************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2273  (0.126778); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                       206  (0.0114898); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 2.09u 0.42s 00:00:02.50 Elapsed: 00:00:00.61
# Mc/sec: 4281.02
//
Query:       EHU00895.1  [L=192]
Description: inner membrane iron-sulfur protein in SoxR-reducing complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-17   62.7  15.4    2.6e-17   62.7  15.4    2.0  2  Fer4_21   4Fe-4S dicluster domain
    1.7e-11   43.6   5.3    1.7e-11   43.6   5.3    2.1  1  FeS       Putative Fe-S cluster
    1.9e-11   43.3  26.4      6e-08   32.2   5.9    3.2  3  Fer4      4Fe-4S binding domain
    2.7e-08   34.3  16.9     0.0011   19.5   8.2    2.8  2  Fer4_7    4Fe-4S dicluster domain
    4.2e-08   33.2  32.7    4.2e-06   26.8  15.1    2.6  3  Fer4_9    4Fe-4S dicluster domain
    1.7e-07   30.9  20.8    5.8e-06   26.1   3.0    3.3  3  Fer4_2    4Fe-4S binding domain
    2.2e-06   27.6  14.3    2.2e-06   27.6  14.3    3.1  3  Fer4_10   4Fe-4S dicluster domain
    4.6e-06   26.5   4.7    4.6e-06   26.5   4.7    3.2  3  Fer4_6    4Fe-4S binding domain
    4.9e-06   27.4  19.7    0.00027   21.8   2.8    3.0  3  Fer4_16   4Fe-4S double cluster binding domain
     0.0067   17.3   4.7     0.0067   17.3   4.7    3.4  3  Fer4_3    4Fe-4S binding domain
  ------ inclusion threshold ------
      0.017   15.6  25.4      0.048   14.2   3.7    3.4  3  Fer4_4    4Fe-4S binding domain
      0.029   15.2   0.7      0.029   15.2   0.7    2.6  2  Fer4_22   4Fe-4S dicluster domain
      0.035   14.7   4.6      0.035   14.7   4.6    3.2  3  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
       0.13   12.0   1.0       0.22   11.2   1.0    1.3  1  EpuA      DNA-directed RNA polymerase subunit beta
        0.2   11.7   0.3        1.2    9.3   0.1    2.0  2  DUF1290   Protein of unknown function (DUF1290)
       0.24   12.0  21.6       0.73   10.4   2.6    3.0  3  Fer4_17   4Fe-4S dicluster domain
       0.56   11.0  19.3       0.14   12.9   4.3    3.6  2  Fer4_15   4Fe-4S single cluster domain
          2    8.6  16.1        1.8    8.8   3.6    2.4  2  Fer4_18   4Fe-4S dicluster domain
        2.6    8.6  23.0       0.11   12.9   2.4    2.9  3  Fer4_8    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4       1.8   1.7e+03       7      12 ..      48      53 ..      42      75 .. 0.65
   2 !   62.7  15.4   2.7e-20   2.6e-17       1      59 []     110     164 ..     110     164 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
     Fer4_21  7 kCigCg 12
                +C +Cg
  EHU00895.1 48 QCGQCG 53
                454444 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 2.7e-20
     Fer4_21   1 AridedkCigCgkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedciem 59 
                 A ide++CigC+kC++aC+   ++ai ++++++++v++d C+GC+lC+++CP+ dciem
  EHU00895.1 110 AWIDEENCIGCTKCIQACP---VDAIVGATRAMHTVLSDVCTGCDLCVAPCPT-DCIEM 164
                 78*****************...8*****************************6.****9 PP

>> FeS  Putative Fe-S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   5.3   1.8e-14   1.7e-11       1      33 []      44      76 ..      44      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 1.8e-14
         FeS  1 LPgtNCgaCGypgCmafAealvegeaqledCpp 33
                LP+++Cg+CGypgC+++A a+ + ++ +++C p
  EHU00895.1 44 LPQSQCGQCGYPGCRPYADAVGNNGEAINKCAP 76
                9******************************86 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.5      0.61   5.8e+02      11      14 ..      49      52 ..      46      54 .. 0.68
   2 !   32.2   5.9   6.4e-11     6e-08       2      23 ..     111     132 ..     110     133 .. 0.94
   3 !   20.8   5.8   2.5e-07   0.00023       5      24 .]     144     163 ..     140     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.61
                -THH CS
        Fer4 11 CGaC 14
                CG+C
  EHU00895.1 49 CGQC 52
                7777 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 6.4e-11
                 EEETTTSSS-THHHHHSTTTEE CS
        Fer4   2 videekCigCGaCvevCPvgAI 23 
                  idee CigC +C+++CPv+AI
  EHU00895.1 111 WIDEENCIGCTKCIQACPVDAI 132
                 69*******************9 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 2.5e-07
                 TTTSSS-THHHHHSTTTEEE CS
        Fer4   5 eekCigCGaCvevCPvgAIt 24 
                  + C+gC +Cv  CP+++I+
  EHU00895.1 144 SDVCTGCDLCVAPCPTDCIE 163
                 799***************96 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   8.2   1.2e-06    0.0011      12      52 .]      57     131 ..      47     131 .. 0.59
   2 !   18.9   1.5   1.8e-06    0.0017       2      22 ..     147     167 ..     141     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.2e-06
      Fer4_7  12 C..................................pvkaieldeeenekgtekveidpekClgCgaCvavCPtga 52 
                 C                                    + i+ d+e++++ +  + id+e+C+gC++C+++CP++a
  EHU00895.1  57 CrpyadavgnngeainkcapggeqtmlklaallnvEPQPIDGDDEAKAPVRTVAWIDEENCIGCTKCIQACPVDA 131
                 44444555555555555555555444444444444334455555555555566679*****************97 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.8e-06
      Fer4_7   2 CigCgaCvaaCpvkaieldee 22 
                 C+gC  Cva Cp+++ie+++ 
  EHU00895.1 147 CTGCDLCVAPCPTDCIEMRPI 167
                 999999999999999999875 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   9.6   1.1e-06     0.001       4      51 .]      48     132 ..      47     132 .. 0.83
   2 !   26.8  15.1   4.5e-09   4.2e-06       1      51 []     116     162 ..     116     162 .. 0.90
   3 !   11.1   5.3   0.00036      0.34       2      21 ..     147     166 ..     146     177 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-06
      Fer4_9   4 gCgaC.veaC.pagvvvedaaerkarlraase...................................eaCigCgaCveaCpkgai 51 
                 +Cg+C  + C p+  +v+ ++e ++++   +e                                   e+CigC +C++aCp +ai
  EHU00895.1  48 QCGQCgYPGCrPYADAVGNNGEAINKCAPGGEqtmlklaallnvepqpidgddeakapvrtvawideENCIGCTKCIQACPVDAI 132
                 7888877789656666777777777877777788888899999999999999999999999999999***************987 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 4.5e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkgai 51 
                 +C+gC++C++aCp +++v+   +    l       C+gC  Cv+ Cp+++i
  EHU00895.1 116 NCIGCTKCIQACPVDAIVGATRAMHTVLSDV----CTGCDLCVAPCPTDCI 162
                 6****************99988888887664....*************987 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00036
      Fer4_9   2 CtgCgaCveaCpagvvveda 21 
                 CtgC+ Cv+ Cp++ ++++ 
  EHU00895.1 147 CTGCDLCVAPCPTDCIEMRP 166
                 77777777777777776655 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4      0.67   6.3e+02       9      14 ..      48      53 ..      42      60 .. 0.68
   2 !   26.1   3.0   6.2e-09   5.8e-06       3      21 ..     110     128 ..     108     129 .. 0.93
   3 !   13.6   3.8   5.8e-05     0.055       5      22 .]     142     159 ..     138     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.67
      Fer4_2  9 rCigCg 14
                 C +Cg
  EHU00895.1 48 QCGQCG 53
                477776 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 6.2e-09
      Fer4_2   3 vvvdtdrCigCgaCvsaCP 21 
                 +++d+++CigC +C++aCP
  EHU00895.1 110 AWIDEENCIGCTKCIQACP 128
                 7****************** PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.8e-05
      Fer4_2   5 vdtdrCigCgaCvsaCPa 22 
                 v +d C+gC  Cv  CP+
  EHU00895.1 142 VLSDVCTGCDLCVAPCPT 159
                 5689********999**7 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.5      0.31     3e+02       3      13 ..      43      53 ..      41      74 .. 0.80
   2 !   27.6  14.3   2.4e-09   2.2e-06       3      56 .]     111     158 ..     109     158 .. 0.79
   3 !   11.9   5.4   0.00019      0.18       6      24 ..     144     162 ..     139     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.31
     Fer4_10  3 vidddtCirCg 13
                v+++++C +Cg
  EHU00895.1 43 VLPQSQCGQCG 53
                66788899998 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 2.4e-09
     Fer4_10   3 vidddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  id++ Ci+C+kC +aCP+     +a+  a++  +  + ++ Ctgc  Cv+ CP
  EHU00895.1 111 WIDEENCIGCTKCIQACPV-----DAIVGATRAMHT-VLSDVCTGCDLCVAPCP 158
                 699****************.....444444444333.35789***********9 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00019
     Fer4_10   6 ddtCirCgkCvkaCPadlt 24 
                 +d C++C  Cv+ CP+d  
  EHU00895.1 144 SDVCTGCDLCVAPCPTDCI 162
                 589************9653 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.5       2.6   2.5e+03       8      13 ..      48      53 ..      46      58 .. 0.60
   2 !   26.5   4.7   4.9e-09   4.6e-06       1      24 []     109     132 ..     109     132 .. 0.94
   3 !    8.5   6.8    0.0023       2.1       7      24 .]     145     162 ..     141     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
      Fer4_6  8 kCigCg 13
                 C +Cg
  EHU00895.1 48 QCGQCG 53
                455554 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 4.9e-09
      Fer4_6   1 vveidpdkCigCgdCvrvCPegai 24 
                 v+ id+++CigC +C+ +CP +ai
  EHU00895.1 109 VAWIDEENCIGCTKCIQACPVDAI 132
                 5789*****************998 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0023
      Fer4_6   7 dkCigCgdCvrvCPegai 24 
                 d C+gC+ Cv+ CP++ i
  EHU00895.1 145 DVCTGCDLCVAPCPTDCI 162
                 67************9866 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.1       5.7   5.4e+03       1       6 [.      48      53 ..      46      59 .. 0.72
   2 !   21.8   2.8   2.8e-07   0.00027       1      21 [.     116     136 ..     116     142 .. 0.87
   3 !   17.1   1.5   8.4e-06    0.0079       2      30 ..     147     175 ..     146     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.7
     Fer4_16  1 rCgtCg 6 
                +Cg+Cg
  EHU00895.1 48 QCGQCG 53
                477776 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2.8e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekk 21 
                 +C++C+kC+++CP++ai + +
  EHU00895.1 116 NCIGCTKCIQACPVDAIVGAT 136
                 6****************9874 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 8.4e-06
     Fer4_16   2 CgtCgkCaevCPtnaikekkekeiearec 30 
                 C++C  C+  CPt++i+++  ++  a+ +
  EHU00895.1 147 CTGCDLCVAPCPTDCIEMRPIATTTANWK 175
                 *****************995555544444 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7       2.6   2.4e+03       3       7 ..      48      52 ..      47      54 .. 0.83
   2 !   17.3   4.7   7.1e-06    0.0067       1      15 []     117     131 ..     117     131 .. 0.98
   3 ?    6.5   9.4      0.02        18       1      14 [.     147     160 ..     147     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.6
      Fer4_3  3 gCgaC 7 
                +Cg+C
  EHU00895.1 48 QCGQC 52
                59999 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 7.1e-06
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gC  C ++CPv+A
  EHU00895.1 117 CIGCTKCIQACPVDA 131
                 *************98 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.02
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 CtgC +Cv  CP++
  EHU00895.1 147 CTGCDLCVAPCPTD 160
                 ************87 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.8      0.74     7e+02       6      10 ..      48      52 ..      47      54 .. 0.91
   2 ?   14.2   3.7   5.1e-05     0.048       2      16 ..     115     129 ..     114     131 .. 0.92
   3 ?   10.6   6.2   0.00073      0.69       2      16 ..     145     159 ..     144     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.74
      Fer4_4  6 gCgsC 10
                +Cg+C
  EHU00895.1 48 QCGQC 52
                7**** PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.1e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 e+CigC +C+ aCP+
  EHU00895.1 115 ENCIGCTKCIQACPV 129
                 89************7 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00073
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 + C+gC+ Cva CP+
  EHU00895.1 145 DVCTGCDLCVAPCPT 159
                 88************7 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7     3e-05     0.029      77      95 ..     112     130 ..     102     131 .. 0.85
   2 ?    7.0   1.6     0.011        10      79      94 ..     144     159 ..     135     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3e-05
     Fer4_22  77 fgesgCvGCgRCieacpvk 95 
                 ++e+ C+GC +Ci+acpv+
  EHU00895.1 112 IDEENCIGCTKCIQACPVD 130
                 58899***********985 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
     Fer4_22  79 esgCvGCgRCieacpv 94 
                 + +C+GC  C++ cp+
  EHU00895.1 144 SDVCTGCDLCVAPCPT 159
                 6689999999988886 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   4.6   3.7e-05     0.035       1      17 [.     112     128 ..     112     132 .. 0.97
   2 ?    5.4   4.7     0.029        28       4      17 ..     145     158 ..     144     160 .. 0.90
   3 ?    2.9   0.3      0.17   1.6e+02      50      57 ..     156     163 ..     154     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-05
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 +D+++Ci+c++C +++P
  EHU00895.1 112 IDEENCIGCTKCIQACP 128
                 89**************9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.029
     Fer4_13   4 dtCiacgaCvelaP 17 
                 d C++c++Cv+ +P
  EHU00895.1 145 DVCTGCDLCVAPCP 158
                 67***********9 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.17
     Fer4_13  50 aCPvesIg 57 
                  CP+++I+
  EHU00895.1 156 PCPTDCIE 163
                 5******7 PP

>> EpuA  DNA-directed RNA polymerase subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   0.00023      0.22       2      21 ..       6      25 ..       5      26 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
        EpuA  2 iiVivLavlalaiGlmiGYg 21
                i V+vL +l+l+ G+++GY+
  EHU00895.1  6 IAVAVLSALSLVFGALLGYA 25
                78*****************6 PP

>> DUF1290  Protein of unknown function (DUF1290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0013       1.2       8      33 ..       5      30 ..       1      33 [. 0.89
   2 ?    0.0   0.0      0.97   9.2e+02      17      27 ..     129     139 ..     123     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
     DUF1290  8 ylsvailaaldsvfGgiraslekkFd 33
                +++va+l+al  vfG++  +  ++F+
  EHU00895.1  5 WIAVAVLSALSLVFGALLGYASRRFE 30
                79***************999999997 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.97
     DUF1290  17 ldsvfGgiras 27 
                 +d+++G++ra+
  EHU00895.1 129 VDAIVGATRAM 139
                 8********97 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.8    0.0049       4.6       2      58 ..      49     129 ..      48     132 .. 0.51
   2 ?   10.4   2.6   0.00077      0.73       1      15 [.     116     130 ..     116     144 .. 0.73
   3 ?    8.4   3.8    0.0034       3.2      44      59 ..     145     160 ..     130     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0049
     Fer4_17   2 CiqCgy..ClpeCpsyeaydn....e....pkkllraakl..........glleeaeke.........ekaslCieCgeCerkCPq 58 
                 C qCgy  C+p      ++++    +    ++ ++ ++++          g      +             ++Ci+C +C ++CP 
  EHU00895.1  49 CGQCGYpgCRPYADAVGNNGEainkCapggEQ-TMLKLAAllnvepqpidG----DDEAkapvrtvawIDEENCIGCTKCIQACPV 129
                 99999999999333333322222221222133.333333235556654431....211123465443334499***********96 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00077
     Fer4_17   1 rCiqCgyClpeCpsy 15 
                 +Ci+C  C+++Cp  
  EHU00895.1 116 NCIGCTKCIQACPVD 130
                 588888888888764 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0034
     Fer4_17  44 slCieCgeCerkCPqg 59 
                 + C++C +C++ CP +
  EHU00895.1 145 DVCTGCDLCVAPCPTD 160
                 5699999999999975 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.3   0.00015      0.14       2      32 ..     111     142 ..     110     146 .. 0.77
   2 ?    1.8   7.1      0.42     4e+02       6      20 ..     145     159 ..     140     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
     Fer4_15   2 vvDrdaCigcglCvaeap.evfeldedglasv 32 
                 ++D+++Cigc  C++++p + ++ + + +++v
  EHU00895.1 111 WIDEENCIGCTKCIQACPvDAIVGATRAMHTV 142
                 69***************735666666666655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.42
     Fer4_15   6 daCigcglCvaeape 20 
                 d C+gc lCva +p+
  EHU00895.1 145 DVCTGCDLCVAPCPT 159
                 78********99974 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.6    0.0019       1.8      58      74 ..     114     130 ..      97     140 .. 0.78
   2 ?    5.4   4.8     0.022        21      58      74 ..     144     160 ..     131     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0019
     Fer4_18  58 agdcidcescvkvcPtg 74 
                 + +ci c +c++ cP++
  EHU00895.1 114 EENCIGCTKCIQACPVD 130
                 56788888888888865 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.022
     Fer4_18  58 agdcidcescvkvcPtg 74 
                 +  c+ c+ cv+ cPt+
  EHU00895.1 144 SDVCTGCDLCVAPCPTD 160
                 456************96 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  10.4     0.013        12       4      63 ..      48     129 ..      45     131 .. 0.57
   2 ?   12.9   2.4   0.00012      0.11       3      17 ..     115     129 ..     113     145 .. 0.73
   3 ?    5.6   5.1     0.023        22      51      63 ..     147     159 ..     133     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.013
      Fer4_8   4 kCieCg..aCq.............saCp...........vlrrtkkhlldargeaae..dvqeeqvleeeealwsCttcgaCtevCpv 63 
                 +C++Cg   C+             ++C            +l +    + d  +ea++  + + +         ++C +c +C ++Cpv
  EHU00895.1  48 QCGQCGypGCRpyadavgnngeaiNKCApggeqtmlklaALLNVEPQPIDGDDEAKApvRTVAWI------DEENCIGCTKCIQACPV 129
                 66677644466777777666666666733444444444355555566666666666644222222......25788888888888887 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00012
      Fer4_8   3 ekCieCgaCqsaCpv 17 
                 e+Ci+C  C +aCpv
  EHU00895.1 115 ENCIGCTKCIQACPV 129
                 689999999999994 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.023
      Fer4_8  51 CttcgaCtevCpv 63 
                 Ct+c  C+  Cp+
  EHU00895.1 147 CTGCDLCVAPCPT 159
                 7777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1448.32
//
Query:       EHU00896.1  [L=193]
Description: inner membrane subunit of SoxR-reducing complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-58  198.0  22.4    1.3e-58  197.8  22.4    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8  22.4   7.3e-63   1.3e-58       2     173 ..       5     190 ..       4     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 7.3e-63
                 -HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH------.....---HHHHHHHHHHHHHHHHHHT------THHHH CS
     Rnf-Nqr   2 lkillsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipk.....klriivfilviAalvtlvelvlkaflpslykaL 95 
                 l +++ ++l++N+vlv+flG+Cpf++vskkl++a+gmgla+tfv++l++++++l+++li+      +lr++++ilviA++v+++e+v+++++psly+ L
  EHU00896.1   5 LLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVITLASICAWLVNHLILVpldlvYLRTMAYILVIAVVVQFTEMVVRKTSPSLYRLL 103
                 6789*********************************************************************************************** PP

                 HHHHHHHHS-HHHHHHHHT-----.---THHHHHHHHHHHHHHHHHHHHHHHHHHT........S-SSS.-----SHHHHHHHHHHH CS
     Rnf-Nqr  96 giflpLivvNCiilgraeafaskn.svleslldglgsglGftlalvllaairellg........kGtliglilagllagaFlglggl 173
                 giflpLi++NC++lg+ ++ ++ n ++l+++l+g+ ++lGf l++vl+a++re+l         kG  i+li+agl+a+aF+g++gl
  EHU00896.1 104 GIFLPLITTNCAVLGVPLLSVNLNhTFLKAALYGFSASLGFSLVMVLFAGMRERLVlanvpapfKGNSIALITAGLMALAFMGFTGL 190
                 *****************99998778************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1392.55
//
Query:       EHU00897.1  [L=147]
Description: hypothetical protein CKS_3491 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-41  142.4  14.0    1.5e-41  142.2  14.0    1.0  1  DUF2569   Protein of unknown function (DUF2569)
  ------ inclusion threshold ------
      0.053   12.2   5.0      0.065   11.9   5.0    1.2  1  TctA      Tripartite tricarboxylate transporter TctA family
       0.27    9.5   9.3       0.31    9.3   9.3    1.0  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> DUF2569  Protein of unknown function (DUF2569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2  14.0   2.5e-45   1.5e-41       2     143 .]       8     145 ..       7     145 .. 0.99

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 2.5e-45
     DUF2569   2 krigGwLllpligLilsllsialelidalkalfsleewstlknleslltlllileiitnialvafsilllvlffkrrksfPklyiifllanlvlalida 100
                  rigGwLllpl++L+++ll++al ++++l +lf+ + ++tl+n+ sl+t +++++++t++al+a+s++++++ffkr+ ++P++yi++ll++++lal+ +
  EHU00897.1   8 PRIGGWLLLPLAWLLMTLLTTALVMAMYLTPLFDAQWRETLFNHRSLVTGYWAISLLTATALWAYSMWVVWMFFKRSLRLPRHYIVWLLITVLLALK-T 105
                 59***********************************************************************************************.* PP

     DUF2569 101 lllspifekldaqairellqsvlaaaiwipYflkSkRVketFv 143
                 ++ +p+   +da a+++ll s+ aaa+++pYf++S+RVk+tF+
  EHU00897.1 106 FACTPV---SDARALQTLLLSLAAAAVFVPYFKRSARVKATFT 145
                 ******...*********************************6 PP

>> TctA  Tripartite tricarboxylate transporter TctA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.0   1.1e-05     0.065     298     378 ..      27     109 ..       9     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
        TctA 298 gvaavllgall.ihglqpgpeLftenpelvyallasllianvlllvlgllliklfak.llkipkelLlp.iilvllvigayaln 378
                  +a v+   l+ + + q  ++Lf ++ +lv +  a++l+++ +l++ +++++ +f k  l++p++++++ +i+vll++ ++a +
  EHU00897.1  27 TTALVMAMYLTpLFDAQWRETLF-NHRSLVTGYWAISLLTATALWAYSMWVVWMFFKrSLRLPRHYIVWlLITVLLALKTFACT 109
                 3333333322226799999****.5899*****999999999999999999999998899***999887257777777788766 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.3   5.2e-05      0.31      72     179 ..      21     138 ..       6     145 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.2e-05
     DUF2070  72 lflalltelivviisllaillsall......qalvllalvls...lalvfalrllvlvavsdes..llkavlpaliqpllailllvlyfspesflllll 159
                 l++ llt+ +v++++l +++ + +        +lv+ ++++s    ++  a+++ v+++++++s  l++ +++ l++++l++l +++  +p s +++l 
  EHU00897.1  21 LLMTLLTTALVMAMYLTPLFDAQWRetlfnhRSLVTGYWAISlltATALWAYSMWVVWMFFKRSlrLPRHYIVWLLITVLLALKTFAC-TPVSDARALQ 118
                 5666677777777666666655555767778888888888885554555567888888888765116788999999999999999998.5555555555 PP

     DUF2070 160 lslifalavylfivvvdrpl 179
                 ++l+ ++a+++f+ +++r  
  EHU00897.1 119 TLLLSLAAAAVFVPYFKRSA 138
                 55555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1156.33
//
Query:       EHU00898.1  [L=152]
Description: AsnC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-18   65.8   0.2    3.3e-18   65.0   0.2    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
    1.1e-15   57.1   0.6    3.5e-15   55.6   0.6    1.8  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    1.4e-14   53.8   0.0      2e-14   53.3   0.0    1.2  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    1.3e-05   25.0   0.0    2.5e-05   24.1   0.0    1.4  1  MarR            MarR family
     0.0011   18.8   0.1     0.0021   17.9   0.1    1.4  1  MarR_2          MarR family
     0.0014   18.6   0.1     0.0026   17.8   0.1    1.3  1  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.9   0.5       0.02   15.0   0.2    1.6  2  HTH_28          Helix-turn-helix domain
       0.04   13.5   0.0       0.11   12.0   0.0    1.7  2  HTH_47          winged helix-turn-helix
      0.042   13.6   0.1      0.091   12.6   0.1    1.6  1  HTH_IclR        IclR helix-turn-helix domain
      0.093   13.1   0.0       0.33   11.3   0.0    1.8  2  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2   1.8e-21   3.3e-18       2      47 ..       8      53 ..       7      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.8e-21
      HTH_24  2 detdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                d+td++ILe Lq+++r+s+ eLAe+++lSps++++r +rLe++G+I
  EHU00898.1  8 DRTDIRILEHLQREGRCSIVELAEAINLSPSPCLARTRRLEQSGII 53
                89*******************************************9 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.6   1.9e-18   3.5e-15       2      42 .]       8      48 ..       6      48 .. 0.99
   2 ?   -1.8   0.0       1.7     3e+03      16      24 ..      58      66 ..      56      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.9e-18
  HTH_AsnC-type  2 DeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   D++D++ILe+Lq+ +R s  eLAe+++lS+s++l+R rrLe
     EHU00898.1  8 DRTDIRILEHLQREGRCSIVELAEAINLSPSPCLARTRRLE 48
                   9***************************************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
  HTH_AsnC-type 16 aRisyaeLA 24
                   aRis  +L+
     EHU00898.1 58 ARISLNKLG 66
                   899999998 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.1e-17     2e-14       2      73 ..      74     145 ..      73     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.1e-17
                     EEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEE CS
  AsnC_trans_reg   2 lvslepgh.peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivl 73 
                     +++l + h p ++ +fe   +++ e+vecy ++G ydyllk+ +++l  +++++ + l++  g+a++ + +vl
      EHU00898.1  74 EITLAS-HyPSDFLRFETGARQYREIVECYNISGGYDYLLKIIAPNLYRFQDLMARLLDDEIGIAKFASRVVL 145
                     689995.55************************************************************9998 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   2.5e-05       4      47 ..      10      53 ..       8      56 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                t ++iL+ l ++g +s+ eLa+++++s+s     ++rLe+ G i
  EHU00898.1 10 TDIRILEHLQREGRCSIVELAEAINLSPSPCLARTRRLEQSGII 53
                789***************************************99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.2e-06    0.0021       5      51 ..       9      53 ..       5      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLv 51
                +++ r+L +L r+++  +++ ela++ +ls+s    + +rL++ G +
  EHU00898.1  9 RTDIRILEHLQREGR--CSIVELAEAINLSPSPCLARTRRLEQSGII 53
                7899*********98..**************************9988 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.5e-06    0.0026      10      55 ..       9      54 ..       5      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 10 PvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                ++  ril +L r++  +  elae++ ls++ +  + r Le+ g++ 
  EHU00898.1  9 RTDIRILEHLQREGRCSIVELAEAINLSPSPCLARTRRLEQSGIIA 54
                67789***************************************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   1.1e-05      0.02       4      46 ..      13      58 ..      12      61 .. 0.87
   2 ?   -3.1   0.0         5     9e+03      16      20 ..      96     100 ..      88     106 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
      HTH_28  4 eiiklla.aGh.svreaArelgisrrtvyrWikryeegGi.agLvp 46
                +i+++l+ +G+ s+ e+A++ ++s++ +    +r+e+ Gi ag + 
  EHU00898.1 13 RILEHLQrEGRcSIVELAEAINLSPSPCLARTRRLEQSGIiAGYAA 58
                89999996689****************************5488765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5
      HTH_28  16 reaAr 20 
                 re+ +
  EHU00898.1  96 REIVE 100
                 33333 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.3e-05      0.11      44      77 ..      21      54 ..       6      55 .. 0.93
   2 ?   -1.8   0.0       1.3   2.3e+03      32      52 ..      94     114 ..      88     131 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
                EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 44 DGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                 G+ s++++Ae i+l+   ++a  r+L++ g++a
  EHU00898.1 21 EGRCSIVELAEAINLSPSPCLARTRRLEQSGIIA 54
                5999****************************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 -HHHHHHHHHH-EEEEEHHHH CS
      HTH_47  32 aemallwvLnlaDGkrsLldi 52 
                 + ++++++ n++ G   Ll+i
  EHU00898.1  94 QYREIVECYNISGGYDYLLKI 114
                 456677777888888888776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.1e-05     0.091       7      33 ..      13      38 ..      12      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.1e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HH CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkS 33
                +iL++l ++++  ++ elA+++ l++S
  EHU00898.1 13 RILEHLQREGRC-SIVELAEAINLSPS 38
                8**********6.************99 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.33      17      56 ..      15      54 ..      10      61 .. 0.87
   2 ?   -1.2   0.0       1.5   2.7e+03      27      45 ..      94     114 ..      75     117 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                L++ ++e+ +s+ e+ae  n+sps +   +++L+++g++ 
  EHU00898.1 15 LEHLQREGRCSIVELAEAINLSPSPCLARTRRLEQSGIIA 54
                455556666*****************************96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.5
                 -HHHHHHHHTS-..HHHHHHH CS
        Rrf2  27 sseeiaerqnis..psyleki 45 
                 + +ei e++nis    yl ki
  EHU00898.1  94 QYREIVECYNISggYDYLLKI 114
                 567888888888333455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1122.34
//
Query:       EHU00899.1  [L=453]
Description: putative aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-75  253.8   0.0    2.8e-75  253.5   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.5   0.0   1.6e-79   2.8e-75      10     404 ..      46     439 ..      39     441 .. 0.88

  Alignments for each domain:
  == domain 1  score: 253.5 bits;  conditional E-value: 1.6e-79
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-...SEEEEESSHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkg.ldkvflansGseAvetAlKl 106
                  +l i ++eG++l d +g+rylD++    v+ lGh+hP+v++a+ +q+++l  ++   + ++ +l lae ll+ +p+  l +++l  +GseA+  A+++
   EHU00899.1  46 PLHIVRGEGAWLFDPEGRRYLDVYNN--VTSLGHCHPAVTDAICNQVKTL-ATN-TRYLHDTILILAERLLATVPEThLAHLMLTCTGSEANDLAFRI 139
                  5899********************96..7889*****************9.556.678899999999999999998515599999************* PP

                  HHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH...CHTCCCEEEEEE-SC CS
  Aminotran_3 107 arkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale...kkkkdevaAvivEpi 201
                  a+       +t  t ii  + a+HG t + +s  +++ + +    ++ p+v  +++p  ++++  +  +++ ++ +e  +   +++  + aA+iv   
   EHU00899.1 140 AKI------RTGGTGIIVTETAYHGITDA-VSQFSPSLGKSV---DLGPHVRLVPAPRAYHADGVD-LSERFTQDVETAIadlQRHGIQPAALIVDSL 226
                  ***......9***************9985.555555344444...445666677777666665554.33444444444444556888899******** PP

                  ETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSS.SSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS.B--TTTT-HHH CS
  Aminotran_3 202 qgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGk.lfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs.hgsTfgGnpla 297
                      G+ + + +fl+++ +  ++ + l+i+DEvq GfGrTG+ +++ +  g+ pD++tl+K +++G p++  lata+v   + + s   +Tf+Gn++ 
   EHU00899.1 227 FTSDGILPGPTGFLHGAVNAIRQAGGLFIADEVQPGFGRTGEnMWGFQRHGLRPDIVTLGKPMGNGQPVAGLLATADVLAEFGQRSrYFNTFAGNTVS 324
                  *****************************************659**************************************8777789********* PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC......HHHHHHHHHCTEE-EEETT..TEEEE--- CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke......keilkkakekGvlilsaGd..nvirllpp 387
                  ca+alavl++ie+e l+ +a+e+g++l eg + l++++e i++vRg+Gl++++el+++++ +        ++++++++kGvl+  + +  nv++++pp
   EHU00899.1 325 CAAALAVLDTIEREGLIAHARETGNRLLEGIRGLSHRHEAIGDVRGAGLFVGVELVSDRQSRAadrwltSQVVNRMRQKGVLLSACAMghNVLKIRPP 422
                  ***********************************************************977799****99************9985555******** PP

                  TT--HHHHHHHHHHHHH CS
  Aminotran_3 388 liitdeeidelleilkk 404
                  l+ t+e+++ +++ l +
   EHU00899.1 423 LVLTAEQAEIIIDVLDQ 439
                  ***********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3524.30
//
Query:       EHU00900.1  [L=349]
Description: aminoglycoside phosphotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-28  100.3   3.4    1.8e-28  100.1   1.1    1.9  2  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   1.1     1e-32   1.8e-28       2     226 ..      39     271 ..      38     288 .. 0.76
   2 ?    0.3   0.0     0.031   5.5e+02      19      38 ..     313     333 ..     301     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1e-32
                 EEEE--.SSCEEEEEEETT.--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-..B--B-CTTBS-EEETTE..........EEEEEE----EE-SS.HH CS
         APH   2 vrelsggasnrtylvttpa.gryvlrrnpparaaeeirrevallrlLakagv..pvPevlagdtddeeigl..........lfalieyvpgrsllr.kl 86 
                 v++l++   +++  ++tp+ +r+vl++++p++a++ + ++ a l ++a+  +  p+P+v+   t+++ +            l++++++++g ++++ ++
  EHU00900.1  39 VQPLASER-DQNCCIETPTgTRFVLKISNPGEAKAIVDFQIAALEHIAEVAPdlPTPRVVR--TSAGKECDivtlpagsttLVRMLSWLEGSQVRDtQP 134
                 67888844.559*******77**********9999999999*******998899******7..666666667788888888***************888 PP

                 HHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH...CCCGCCTCCHHHHHHHHHHHHHHHH--S..SS-EEEE-SS-SGGGEEE CS
         APH  87 saaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesata...rllaselldlleeleeqvlaalaallpg..elptvllHgDlhpgNllv 180
                 ++aq+++++  lg++  al+ +    +++a +++  l++    ++ +    + ++++ + l+e++  ++  ++++   +  +l+++++H+D+h+ N+lv
  EHU00900.1 135 TPAQRRAMACCLGRLDLALQGF----SHPAARHDL-LWNVSAAHRLMDkleAVIDPARRRLAEKFMMRFTTQVLP---RlgSLRAQVIHNDYHLYNVLV 225
                 8888888888888888888888....666666644.444444444433000333333333444444444444444...4667***************** PP

                 C...TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHH CS
         APH 181 d.pddgrvtGviDfedaglgpplyDlavllrswtseldpeflaallr 226
                   ++++r+tG+iDf+d+ ++p + ++a+++ ++ ++  + + a+ ++
  EHU00900.1 226 ApDAQDRLTGIIDFGDMIYAPLVGEVATAA-AFQMTGCDDPFAGAAQ 271
                 ******************************.6677666655555544 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.031
                 TT.--EEEEEE-TTS-HHHHH CS
         APH  19 pa.gryvlrrnpparaaeeir 38 
                 p+ + y++r+np+a++a ++ 
  EHU00900.1 313 PHnRAYIMRHNPAAWEALSML 333
                 455799999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2528.04
//
Query:       EHU00901.1  [L=221]
Description: type II haloacid dehalogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-09   37.2   0.0    1.3e-08   35.1   0.0    1.8  2  HAD_2      Haloacid dehalogenase-like hydrolase
    0.00034   21.0   0.0     0.0049   17.2   0.0    2.0  1  Hydrolase  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.11     1e+03     121     148 ..      44      71 ..      33      83 .. 0.75
   2 !   35.1   0.0   1.5e-12   1.3e-08      77     172 ..      93     186 ..      62     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.11
       HAD_2 121 yFdvivtsedvekkKPdpeviekalekl 148
                 +F +    e  +  KP  +vie+al++ 
  EHU00901.1  44 HFRFYRLDEVLGAWKPFYQVIENALQRA 71 
                 5666666666777899999**9999874 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.5e-12
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkag 172
                 + +p ++v e+L ++ ++ + l i ++++ + + +++++lg    F+ ++t+e+++  KP ++++e + ++l++ +e+++ +  s+ +D+++a  +g
  EHU00901.1  93 SWQPHPHVVETLTTI-AQHIPLVILSNSMIDLIPHSVTRLG--APFHAVYTAEEAQAYKPRARIFEYMFDQLGCGPEQMMHCSSSFrYDLMTACDLG 186
                 47899**********.99***********************..69***********************************99999999999987776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.5e-07    0.0049       2     195 ..       6     170 ..       5     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.5e-07
                 SEEEEESBTTTBCHH..HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge..psvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrgayaigkpewltaldippdlgaaigsaqsqg 97 
                 k + fD+ GTL++ e  p  + +++ +          +se + +  l+++   r  ++   +        y++ +  + +a                ++
  EHU00901.1   6 KFISFDCYGTLINFEmgPTAKGIYADR----------VSEAHMATFLAHFRFYRLDEVlGAWKP-----FYQVIENALQRAC---------------HA 74 
                 567899999999999777777787777..........666666666766666665555234444.....4444444444444...............66 PP

                 HHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  98 rtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevam 195
                 + v++++ +a   +++  ++++ p ++e++ ++ +  i++v+l+++      +   +lG   f+av+++++    kp  +++++  ++L+  pe++++
  EHU00901.1  75 HGVVYQESDAQTFYAAVASWQPHPHVVETLTTIAQH-IPLVILSNSMIDLIPHSVTRLG-APFHAVYTAEEAQAYKPRARIFEYMFDQLGCGPEQMMH 170
                 677777778888888889999***********9965.9**********99997888888.7789999999999****************988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1605.12
//
Query:       EHU00902.1  [L=160]
Description: putative cold-shock protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   34.7   0.1    2.3e-08   33.8   0.1    1.5  1  CSD       'Cold-shock' DNA-binding domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   1.3e-12   2.3e-08       2      64 ..       4      63 ..       3      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.3e-12
                EEEEE.EEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEE CS
         CSD  2 tGtVk.wfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVt 64
                +Gt+  wf++ kgfGFI++e+gd + ++Hv ++ + +   ++++ +V+Fe + ++kg +A  V+
  EHU00902.1  4 NGTITtWFQD-KGFGFIKDENGD-NRYFHVIKVANPD--LIKKDASVTFEPTTNNKGLSAFAVK 63
                6777626666.************.6688999999888..89*******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1242.09
//
Query:       EHU00903.1  [L=47]
Description: hypothetical protein CKS_3497 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 388.40
//
Query:       EHU00904.1  [L=180]
Description: nucleoprotein/polynucleotide-associated enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-57  194.3  11.5      2e-57  194.1  11.5    1.0  1  DUF2058     Uncharacterized protein conserved in bacteria (DU
     0.0056   16.5   0.2      0.012   15.4   0.0    1.5  1  Pfg27       Pfg27
  ------ inclusion threshold ------
       0.05   13.3   5.7      0.069   12.9   5.7    1.3  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> DUF2058  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1  11.5   3.4e-61     2e-57       1     174 []       5     180 .]       5     180 .] 0.95

  Alignments for each domain:
  == domain 1  score: 194.1 bits;  conditional E-value: 3.4e-61
     DUF2058   1 sLqeQLlkaGLvdkkkakkakkekrkqkkqkkkgaadeakeaaee.akaekaerdrelneqrkeeaekkalkaqirqlieenrlkkkegeiaynFtdgk 98 
                 +LqeQLlkaGLv++kk++k++++++k++ q+++     a+ea+ee +k++++erdr+l+e+rk++  +k++kaq++qlie+nr+  ++gei +nFtd++
  EHU00904.1   5 TLQEQLLKAGLVTSKKMDKVQRTAKKSRVQARE-----AREAVEEnKKKAQIERDRQLSEKRKQAVLAKEYKAQVKQLIEMNRIVVAKGEIGFNFTDNN 98 
                 59****************************988.....5666655156789************************************************ PP

     DUF2058  99 kvkklyvdeklqkqLvkGrlaivrl......eeeyelvpaevaekiaerdeevvvllnekeeeekdeddpYadyqiPDDLmW 174
                  +kk++vd+ +q+qL++Grlai+rl      e +y+++pa+va+kia+rd++ +vl+++ ++++++eddpYad+++PDDLmW
  EHU00904.1  99 LIKKIMVDKPVQTQLINGRLAIARLmaensdEPHYAIIPASVADKIAQRDPDSIVLNSALSQDAQEEDDPYADFKVPDDLMW 180
                 *************************999988889************************************************ PP

>> Pfg27  Pfg27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-06     0.012       9      83 ..      78     150 ..      69     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-06
                 -S--HHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHT-HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHH CS
       Pfg27   9 kdlstiirkvgelefnatsdyiyllkilskdkekfnyalkdrvailkevrktqnelfslkleeevkvsivlrise 83 
                  ++  i+   ge+ fn t++   l+k +  dk      ++ r ai + +  + +e ++  ++  v ++i++r  +
  EHU00904.1  78 IEMNRIVVAKGEIGFNFTDN--NLIKKIMVDKPVQTQLINGRLAIARLMAENSDEPHYAIIPASVADKIAQRDPD 150
                 55666777789********9..8999999999888889********************************99655 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.7   1.2e-05     0.069      32      88 ..       9      70 ..       5     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
  EMC3_TMCO1 32 ellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsem.....m 88
                +ll+  l++ kkm+k+q++ k+   +are+++  +++k+k+  +r  +l e+ ++       
  EHU00904.1  9 QLLKAGLVTSKKMDKVQRTAKKSRVQAREAREAVEENKKKAQIERDRQLSEKRKQAvlakeY 70
                7899999*************************888888888777888888777776544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2466  (0.137543); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 1525.74
//
Query:       EHU00905.1  [L=228]
Description: ribosomal large subunit pseudouridine synthase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-28   98.3   0.0      7e-28   97.7   0.0    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   3.9e-32     7e-28       1     159 [.      25     177 ..      25     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.9e-32
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      +l+++nKP+g+ + ++    ++++++ +    r       + lvhRLD +tsGl+++A+++++ ++l  +f++r+v+K+Y al+ g+ e +eg+
       EHU00905.1  25 HLLLINKPSGLLSLSGR--HPKNQDSVH---FRLAARFPGCTLVHRLDFGTSGLMVIARNKAINAALCAQFSQRSVSKVYTALLCGHVEHDEGR 113
                      6899********99999..222222222...22223445699**************************************************** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgs....seksakvslveleletGrkhQiRvhla 159
                      ++++i k     + + +    ++gk a+++++vl+++     ++ s +v+ v+l++etGr+hQ+R+h++
       EHU00905.1 114 VDAPIAK-----QFPLMAICARTGKPARSRYQVLARFTyvpdDGPSLPVTRVQLRPETGRTHQLRIHCQ 177
                      *******.....9*******************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1837.57
//
Query:       EHU00906.1  [L=225]
Description: hypothetical protein CKS_3501 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.2    8.0   5.6       0.42   11.2   1.0    1.9  2  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   2.4e-05      0.42       1      18 []       2      20 ..       2      20 .. 0.91
   2 ?   -2.8   0.3      0.65   1.2e+04      12      16 ..      72      76 ..      71      78 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.4e-05
      LPAM_1  1 MKKi.llalgalllLsGCs 18
                M Ki +   +all L+GC+
  EHU00906.1  2 MNKIiVTGTLALLFLTGCA 20
                89998889**********6 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.65
      LPAM_1 12 llLsG 16
                ++Ls+
  EHU00906.1 72 AVLSA 76
                56664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1824.18
//
Query:       EHU00907.1  [L=207]
Description: CheZ family phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-53  179.8   0.1    6.9e-53  179.6   0.1    1.0  1  CheZ      Chemotaxis phosphatase, CheZ
     0.0084   15.9   0.3      0.023   14.4   0.0    1.7  2  PYC_OADA  Conserved carboxylase domain
  ------ inclusion threshold ------
       0.35   10.8   2.6       0.22   11.4   0.5    1.8  2  HSBP1     Heat shock factor binding protein 1


Domain annotation for each model (and alignments):
>> CheZ  Chemotaxis phosphatase, CheZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6   0.1   1.2e-56   6.9e-53       3     201 ..      16     206 ..      14     207 .] 0.93

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 1.2e-56
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CheZ   3 lfeeiGkltReLhdalrelgldekllekaaeeipdardrLeyvielTeqAAertldavekalpladklkeeakeleeewerllerelekeefrelvkev 101
                 l+ + G + R+L+++lrelg+d ++l+++a  ipdar rL yv+++Te+AA+++l +ve +lp +++l+++a++l ++w++++ ++ ++  +r+l++e+
  EHU00907.1  16 LIIRAGFMLRNLRNSLRELGYD-QTLSEVAGGIPDARARLGYVVTMTENAASEVLGCVELTLPAQTTLQDTAESLLARWNSTAITPENEGAARALAEET 113
                 67789*****************.99************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XX.....XXXXXXXXXXXXXXX.XBXXSHHHHHHHHHHH CS
        CheZ 102 eaflkeveektealkkqLleilmaQdfqDLtGQvikkvielvkeveskLvqllleasekeekekkeekeeeleGPvinaekredvvssQdeVDdLLssL 200
                 ++ l +v++ t  +++qL+ ++maQ+fqDLtGQ+i++++++++e+e +Lvq+l+++++++          ++  P   a+ +e   +sQd+VDdLL+sL
  EHU00907.1 114 RTWLGTVPQLTGFTRQQLQAVMMAQGFQDLTGQIIQRMTKMLNELEVHLVQVLRDNVPAQP-------VAKVASPPAAAQPSESPSASQDDVDDLLASL 205
                 **********************************************************433.......3455555556666678899************ PP

                 T CS
        CheZ 201 G 201
                 G
  EHU00907.1 206 G 206
                 9 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-06     0.023       8      48 ..      21      61 ..      21      70 .. 0.95
   2 ?   -1.8   0.1      0.36   2.1e+03      14      40 ..     131     157 ..     126     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-06
                CCHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHTT----ST CS
    PYC_OADA  8 GGqltnlkeqakeqglldkfeevlkeyaevnkllGdivkVT 48
                G +l nl++ ++e+g+ + + ev+  ++++++ lG++v  T
  EHU00907.1 21 GFMLRNLRNSLRELGYDQTLSEVAGGIPDARARLGYVVTMT 61
                67999********************************8776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
                 HHHHHHHTT-GGGHHHHHHHHHHHHHH CS
    PYC_OADA  14 lkeqakeqglldkfeevlkeyaevnkl 40 
                 l+  +++qg+ d   ++++ ++++ ++
  EHU00907.1 131 LQAVMMAQGFQDLTGQIIQRMTKMLNE 157
                 566678899999999998888876555 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.2   7.1e+03       2      13 ..      73      84 ..      73      86 .. 0.82
   2 ?   11.4   0.5   3.7e-05      0.22      14      35 ..     136     157 ..     121     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
       HSBP1  2 eLtavVenlLqq 13
                eLt  ++++Lq+
  EHU00907.1 73 ELTLPAQTTLQD 84
                688889999996 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.7e-05
       HSBP1  14 lqdkFqtmsdqilsriDdMssr 35 
                 + + Fq+++ qi++r+  M + 
  EHU00907.1 136 MAQGFQDLTGQIIQRMTKMLNE 157
                 6778************999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1663.97
//
Query:       EHU00908.1  [L=514]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-47  159.1  18.6      9e-47  159.1  18.6    3.2  4  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si
    6.1e-14   52.0   0.5    6.1e-14   52.0   0.5    3.0  3  4HB_MCP_1        Four helix bundle sensory module for signal 
  ------ inclusion threshold ------
       0.21   11.4   4.2       0.56   10.0   0.5    2.7  2  Oxidored_q6      NADH ubiquinone oxidoreductase, 20 Kd subuni
       0.72   10.3   5.9       0.16   12.4   1.8    2.1  2  DUF4200          Domain of unknown function (DUF4200)
        3.5    8.1  11.3        5.8    7.4   0.2    3.7  4  Snapin_Pallidin  Snapin/Pallidin


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         2   7.2e+03     126     154 ..      46      74 ..      25      84 .. 0.49
   2 ?   -2.4   0.0      0.99   3.6e+03      21     156 ..     160     173 ..     135     189 .. 0.51
   3 !    5.8   4.4     0.003        11     122     170 ..     263     311 ..     231     323 .. 0.78
   4 !  159.1  18.6   2.5e-50     9e-47       1     172 []     324     481 ..     322     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                 HCCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 126 tgealkeiveavaevadlvqeiaaaseeq 154
                   +  +++  +v ++   v++ia  s+ q
  EHU00908.1  46 KYQLAQSMYGEVRDMGIAVRNIALLSDTQ 74 
                 33333344444444444455555555444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHH CS
   MCPsignal  21 vvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkeindsvesleetrqrveeg 119
                 ++++m ei+++                                                                                        
  EHU00908.1 160 ALRDMTEIQEK---------------------------------------------------------------------------------------- 170
                 23333333222........................................................................................ PP

                 HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 120 selveetgealkeiveavaevadlvqeiaaaseeqsa 156
                                                    s+
  EHU00908.1 171 ----------------------------------NSQ 173
                 ..................................222 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.003
                 HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 122 lveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 lv++ +ea ++++ a++e+a+  +e+++ +e+q+a+++e++ ++e++++
  EHU00908.1 263 LVSQIKEASASVALAADEIAQGNTELSSRTEQQAAALQETAASMEQLTA 311
                 4555566666777888888888899999999999999999999988765 PP

  == domain 4  score: 159.1 bits;  conditional E-value: 2.5e-50
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal   1 sdlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 +d+a+e+ + A++g+  v+ + ++m++i+ s+ ++ di++Vi++ia+QTN+LALNAa+EAARAGe+GrGFa VA+EVr+LA+rsa aa++i++li    
  EHU00908.1 324 ADSARETAQLARTGESDVQRMTRTMHDISVSATKVRDITAVIESIAFQTNILALNAAVEAARAGEEGRGFAMVAGEVRTLAQRSATAARDIKTLI---- 418
                 5889999999*************************************************************************************.... PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                           e+++++ve+g++ +++tg+++ +iv +v+e+ad +++i+ as+eq ++i++v+ av++++ vt
  EHU00908.1 419 ----------EQAVEQVESGVTVASSTGQSILKIVGMVGELADAMDNISLASSEQMQGISQVSIAVSQMDGVT 481
                 ..........99**********************************************************986 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.5   1.7e-17   6.1e-14       2     179 ..       1     181 [.       1     183 [. 0.96
   2 ?   -1.7   2.4       0.5   1.8e+03     149     176 ..     297     326 ..     256     334 .. 0.55
   3 ?   -2.9   0.1       1.1   4.1e+03     128     168 ..     380     420 ..     376     428 .. 0.56

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.7e-17
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieelea...eidkllek 97 
                 +ki+++Li +f+ll+ll i+  ++ +  l+++ +++++ ++ ++++ +  +++  ++r++ ++++++ l +d++ ++   ++i++ +a    + + l +
  EHU00908.1   1 MKISTRLIAGFGLLILLFILCTGIAHQALHHAREGMDDTVNIKMKKYQLAQSMYGEVRDMGIAVRNIALLSDTQAMQPEVTRIQKQKAlfiANRQALGA 99 
                 8**********************************************************************************9998844467899999 PP

   4HB_MCP_1  98 yektilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvdlnlkvAeeaykdnka 179
                 +  t  t+  +e ++++ ++     ++r+++  l  ++   e  +++ +++rp   kl +al ++ ++++k+++ a ++n +
  EHU00908.1 100 ILATDSTPAGREAFKRITDSEGPTFAARDQATRLGLANLDKETTDYLLKDLRPVQTKLLNALRDMTEIQEKNSQAAVQQNSH 181
                 999999999*******************************************************************999976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.5
   4HB_MCP_1 149 r..parekliealeelvdlnlkvAeeaykd 176
                 +  +  ++  e l + v+ n  +A+++ ++
  EHU00908.1 297 AalQETAASMEQLTATVKSNTAGAQQTADS 326
                 112334444455555555555555555554 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.1
   4HB_MCP_1 128 vlelakegkkdeAyqlyetegrparekliealeelvdlnlk 168
                 ++e+a++g+  + +++++ e+r+ ++   +a+ ++ +l ++
  EHU00908.1 380 AVEAARAGEEGRGFAMVAGEVRTLAQRSATAARDIKTLIEQ 420
                 66777777777777777777775554444444444443333 PP

>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   0.00016      0.56      62      85 ..     185     208 ..     156     234 .. 0.83
   2 ?    1.7   0.1      0.06   2.2e+02      13      70 ..     359     418 ..     347     465 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
                  HHHHHHHHGGGSSEEEEESHHHHH CS
  Oxidored_q6  62 alellkelaekakaviavGtCAaf 85 
                  +  l+  l + a +++avG+CA++
   EHU00908.1 185 RASLILMLLATASVIVAVGACAVT 208
                  55677888999***********97 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.06
                  TTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...E.....EEHHHHHHHHG CS
  Oxidored_q6  13 edlldllelielryhetlladskeeeieakekeadvlvveGavtrkp.....kealellkela 70 
                   d+ +++e i ++ ++  l+++  e+++a+e++  +++v G v  ++     ++a + +k l 
   EHU00908.1 359 RDITAVIESIAFQTNILALNAAV-EAARAGEEGRGFAMVAGEV--RTlaqrsATAARDIKTLI 418
                  34444444454555333333333.37788999999*******9..444566633333333333 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.2   1.1e+04       9      14 ..     165     170 ..     154     186 .. 0.49
   2 ?   12.4   1.8   4.5e-05      0.16       7     101 ..     266     360 ..     260     367 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
     DUF4200   9 fevqea 14 
                  e+qe+
  EHU00908.1 165 TEIQEK 170
                 333322 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.5e-05
     DUF4200   7 emfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseieklee 101
                 ++ e+  +++ + +ei++ + +l++r e+  ++ qe   ++++++  +k+n a  ++    a e ++l +  e+++++++  + ++    +k  +
  EHU00908.1 266 QIKEASASVALAADEIAQGNTELSSRTEQQAAALQETAASMEQLTATVKSNTAGAQQTADSARETAQLARTGESDVQRMTRTMHDISVSATKVRD 360
                 67788888888999*********************************************************************999888777766 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2    0.0016       5.8      44      80 ..     136     172 ..     129     177 .. 0.80
   2 ?    2.3   1.2     0.065   2.3e+02      18      51 ..     274     307 ..     246     316 .. 0.58
   3 ?    4.3   2.4     0.015        54      16      82 ..     293     361 ..     279     369 .. 0.72
   4 ?   -3.0   0.0       2.9     1e+04       9      25 ..     416     432 ..     411     467 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0016
  Snapin_Pallidin  44 keleeaqeaevlpdlkeyakKLvnikkrmsslnerlq 80 
                      ++l +++ + +l+dl++ + KL n+ ++m++++e+ +
       EHU00908.1 136 ANLDKETTDYLLKDLRPVQTKLLNALRDMTEIQEKNS 172
                      5555555567899********************9865 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.065
  Snapin_Pallidin  18 ldeklkelrqsQeeLleqldrlnekLkeleeaqe 51 
                      +     e+ q  +eL+++ ++++++L+e++   e
       EHU00908.1 274 VALAADEIAQGNTELSSRTEQQAAALQETAASME 307
                      2233346666667777777777777776655444 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
  Snapin_Pallidin  16 deldeklkelrqsQeeLleqldrlnekLkeleeaqe..aevlpdlkeyakKLvnikkrmsslnerlqkl 82 
                      ++  + l+e+ +s e+L++++++ ++  +++++ +   a++  + ++ ++++++  +++s   ++++ +
       EHU00908.1 293 EQQAAALQETAASMEQLTATVKSNTAGAQQTADSARetAQLARTGESDVQRMTRTMHDISVSATKVRDI 361
                      66778999******************9999999888533333444556666666666666666665555 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.9
  Snapin_Pallidin   9 ellepkldeldeklkel 25 
                      +l+e +++++++ +   
       EHU00908.1 416 TLIEQAVEQVESGVTVA 432
                      56667777776666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2268  (0.126499); expected 358.6 (0.02)
Passed bias filter:                      752  (0.0419432); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 3516.86
//
Query:       EHU00909.1  [L=476]
Description: cytosine/purine/uracil/thiamine/allantoin permease family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-45  155.1  43.9    8.4e-45  153.3  43.9    1.7  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3  43.9   4.7e-49   8.4e-45       2     440 .]      27     448 ..      26     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: 153.3 bits;  conditional E-value: 4.7e-49
  Transp_cyt_pur   2 vpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvvi 96 
                     +p  eR++ ++  f++W+g nl i+++v+gal+++lg +  +s++  +vg+++ga++++l++++G+++Glp++i+sR++fG++g+++plll+ ++
      EHU00909.1  27 IPLRERHGHPFSQFTLWFGGNLQITAIVTGALAVVLGGDVVWSLVGLLVGQILGAGIMSLHAVQGPRLGLPQMITSRMQFGVYGAVIPLLLVCMM 121
                     8889******************************************************************************************* PP

  Transp_cyt_pur  97 aivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.Gpv 190
                     ++++ ++ ++++++al+ ++                  +t+   ++ f+++ +vi +lg   i ++ ++a+ lv+v+af++l+ +lv ++   pv
      EHU00909.1 122 YVGFSASGTVLAGQALAKLVHVSN--------------ATG---MILFSALIIVIAVLGYRVIHQLGKLAS-LVGVLAFAYLFITLVITHDlTPV 198
                     *****************9998662..............222...344566666666677777777777655.67888899999999999987999 PP

  Transp_cyt_pur 191 ldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet.agv 284
                      +++  ++ ++ fl av +  +  +++ + ++D++ry++   s++  +++++++++t +   + l++ +a+ a +a a + +  + +  +t    
      EHU00909.1 199 WQNQ-HFT-LAHFLLAVSLSSSWQIAFCPYVSDYSRYLPANVSAKTLFWSVFFGTVTGTQASMTLGVIVAALAGKAFAGNEVGYIVSLGSTpTMA 291
                     9854.444.45799999999999999999999*****************9999999999988888888888887777777776677777777899 PP

  Transp_cyt_pur 285 llililvalaqlgvnisanllsagldlaallP....kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiadyfvv 373
                     ++i++ +++ ++ ++  +++ s++  ++ + +      + + +++l++ ++  v +++ lls+ ++l  ft fl +l +f+ p+ ++ ++d++v+
      EHU00909.1 292 MVIYFAICFGKITFTTLNAYGSFMALTTIVSGfrqqSAMGRGARILFVVLMVSVACVIALLSEPAFLktFTHFLLFLLAFFVPWSAISLIDFYVI 386
                     9**************99999999876555555887777888888999998888888888************************************ PP

  Transp_cyt_pur 374 rrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                      +g++ + al    + ++Y     +N   + +y++G++++l++++ +     +  ++ + d+s+ +G
      EHU00909.1 387 TQGKVDIPALSQ--PDGRYG---RWNRVGITVYVLGVLVQLPFIDNPLHHGSLTWLFAGNDVSWCIG 448
                     **********99..*****9...******************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3390.26
//
Query:       EHU00910.1  [L=110]
Description: hypothetical protein CKS_3505 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   14.2   1.3      0.045   13.9   1.3    1.2  1  DUF4760   Domain of unknown function (DUF4760)


Domain annotation for each model (and alignments):
>> DUF4760  Domain of unknown function (DUF4760)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.3   2.5e-06     0.045      25     123 ..       5     103 ..       1     107 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-06
     DUF4760  25 rnnakfqea.lkqlrk.vldsgkslakftlleekksekgeeeserekiltvlNflEfvavgiesgildEdmikelsvttvikawdlleplikelredsn 121
                 +nn+ ++   ++ +r  + d+ + +++++ll  +k+++ e+e+ +++  ++l ++E    +  ++++ E   k++    + k++++l++  ++ ++  +
  EHU00910.1   5 VNNKMYRYNlIQDMRSaARDMSVAVRNIALLSDAKEKQTEWERVQNQKANYLAKREKLVSSMSQNVSAEG--KNALENLLAKDDQALNLITMAGQKAMQ 101
                 6777787666899***99*************************999999*********99*******996..666644444444455554555566665 PP

     DUF4760 122 nd 123
                 +d
  EHU00910.1 102 SD 103
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1341  (0.074795); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 819.05
//
Query:       EHU00911.1  [L=482]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-47  162.2  14.2      1e-47  162.2  14.2    3.8  4  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    1.4e-05   25.4   7.3    2.1e-05   24.8   0.4    4.3  4  HAMP           HAMP domain
     0.0058   16.9  31.4     0.0085   16.3   3.5    5.9  6  DUF948         Bacterial protein of unknown function (DUF948)
  ------ inclusion threshold ------
      0.079   13.1   0.3      0.079   13.1   0.3    2.5  3  EcoEI_R_C      EcoEI R protein C-terminal
       0.14   12.3   1.3        0.4   10.7   0.4    2.2  2  DUF2096        Uncharacterized protein conserved in archaea (
       0.22   11.6  17.9        1.9    8.6   3.1    3.8  4  DUF1664        Protein of unknown function (DUF1664)
       0.26   11.1  16.5        3.2    7.6   1.8    4.0  3  Sec8_exocyst   Sec8 exocyst complex component specific domain
       0.46   11.1  21.4      0.054   14.0   5.7    4.6  4  Syntaxin-6_N   Syntaxin 6, N-terminal
       0.86    9.7   4.7        1.7    8.7   0.2    3.1  3  TssO           Type VI secretion system, TssO
        1.3    8.2  15.5      0.031   13.5   3.4    2.6  3  ISG65-75       Invariant surface glycoprotein
          2    8.9  29.3        1.4    9.4   4.0    4.7  5  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
        2.1    7.0  11.4       0.19   10.3   4.2    2.4  2  Tweety         Tweety
        3.1    7.8  29.6      0.087   12.8   3.0    4.0  5  Laminin_II     Laminin Domain II
          4    7.6  14.6        6.1    7.0   0.4    4.2  4  Fib_alpha      Fibrinogen alpha/beta chain family
          6    6.0  10.6        1.3    8.2   1.7    2.7  3  TMPIT          TMPIT-like protein


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2       0.3   3.5e+02      98     155 ..      10      67 ..       3      73 .. 0.66
   2 !    5.7   1.3    0.0097        12      98     158 ..     150     214 ..     137     221 .. 0.46
   3 !    7.1   6.3    0.0036       4.3      92     162 ..     183     246 ..     170     252 .. 0.49
   4 !  162.2  14.2   8.5e-51     1e-47       1     172 []     253     410 ..     253     410 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.3
                 ............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  98 iqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqs 155
                 i+ke+nd+++ +   +q+     +  e+ ++  ++  +++++++  +    aas  q 
  EHU00911.1  10 IEKEVNDTIKHIRALNQHYLAEDTSNEQDRQMTEKAFTMINKIERDLPAFLAASRAQN 67 
                 6777888888887777776666666666666666677777777777766666666665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0097
                 ............HHHHHHHHHHHHHHHHHCCHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  98 iqkeindsvesleetrqrveegselveetgealkeiveav....aevadlvqeiaaaseeqsasi 158
                 +   ++++ e l+ t +  ++ s+++  t++a++++ ++v    + v++  q +++as+++sa+ 
  EHU00911.1 150 MRLTMEQASENLDLTLKADDTRSDEIGLTAKAFNHLIQTVslslNAVESAAQSVSTASSQMSAGN 214
                 33344455555555555555555666666666554443331111344444445555555555544 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0036
                 HHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  92 ealiieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevn 162
                 ++li    + +  s++++e++ q v+++s++++  +e+l   +++++e a+++++ aa+ +e+s+++ +++
  EHU00911.1 183 NHLI----QTVSLSLNAVESAAQSVSTASSQMSAGNEDL---SARTEEQAASLEQTAASMSELSETVRQTA 246
                 2222....3333334444444444444444444444433...34555555556666666666666665555 PP

  == domain 4  score: 162.2 bits;  conditional E-value: 8.5e-51
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal   1 sdlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 s+la++a+e  e++   v+ ++++m +i++ss++i+dii+ i++ia+QTN+LALNAa+EAARAGeqGrGF VVA+EVr+LA+rs  +a+ei+ali    
  EHU00911.1 253 SQLAKNAREISEDSADRVKTMLTTMGDIRESSAKITDIISLIEGIAFQTNILALNAAVEAARAGEQGRGFPVVAGEVRNLAQRSSSSAREIKALI---- 347
                 5789*******************************************************************************************.... PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                           e++   ve g+ ++e  g++++++ +av +v+dlv+ei++a++eqs++i++v  av+++++vt
  EHU00911.1 348 ----------ESSMGFVEAGAVQAEGVGTNMHKMNDAVRQVTDLVDEISVAAQEQSQGISQVHLAVNQMDDVT 410
                 ..........99**********************************************************996 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.4   1.8e-08   2.1e-05       5      50 ..     142     188 ..     138     191 .. 0.91
   2 ?    1.2   0.1      0.43   5.1e+02      13      28 ..     203     220 ..     187     251 .. 0.63
   3 ?   -1.7   0.0       3.4   4.1e+03      14      22 ..     232     240 ..     225     262 .. 0.57
   4 ?   -0.2   0.1       1.1   1.3e+03       6      18 ..     463     475 ..     462     476 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.8e-08
                 TTHHHHHHHHHHHHHHTTT.BTSSTCCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   5 rilrPLrrLaraarriaaG.dldtrlpvsgrDEiGeLarafNaMldr 50 
                 +i r L+ ++ ++++ +++ dl+   ++++ DEiG  a+afN++++ 
  EHU00911.1 142 AIRRQLNAMRLTMEQASENlDLTLKADDTRSDEIGLTAKAFNHLIQT 188
                 68899************9889***9******************9986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.43
                 HHHHHHHHTTT..BTSST CS
        HAMP  13 LaraarriaaG..dldtr 28 
                 +++a  +++aG  dl++r
  EHU00911.1 203 VSTASSQMSAGneDLSAR 220
                 344555555567777777 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.4
                 HHHHHHHTT CS
        HAMP  14 araarriaa 22 
                 a+++ ++++
  EHU00911.1 232 AASMSELSE 240
                 333333333 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.1
                 THHHHHHHHHHHH CS
        HAMP   6 ilrPLrrLaraar 18 
                 ++rP+ ++++aa+
  EHU00911.1 463 MMRPVSNIVSAAA 475
                 89*********97 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.4   1.6e+03      46      59 ..      11      24 ..       5      58 .. 0.65
   2 ?   -2.1   0.0         4   4.7e+03      45      66 ..      81      95 ..      70     116 .. 0.57
   3 !   16.3   3.5   7.1e-06    0.0085       7      85 ..     126     211 ..     122     215 .. 0.77
   4 !    9.6   2.1   0.00091       1.1      20      86 ..     178     244 ..     174     247 .. 0.93
   5 !    8.7   1.4    0.0018       2.1      27      75 ..     244     292 ..     225     307 .. 0.56
   6 ?    4.2   4.1     0.044        52      23      74 ..     370     410 ..     325     442 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
      DUF948 46 lkevedllakvnel 59
                 kev+d+++++++l
  EHU00911.1 11 EKEVNDTIKHIRAL 24
                45666666665552 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4
      DUF948 45 ilkevedllakvnelledvnek 66
                i  e+++l+a+ ++       +
  EHU00911.1 81 IGAEARQLIANYQQ-------Q 95
                44444444444444.......1 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 7.1e-06
      DUF948   7 AiAFvvLviflivvllklkktldeaaatieelekqvdpil.......kevedllakvnelledvneklekvdplteavadlgesvs 85 
                 A A+++L +f ++++l +++ l++++ t+e+  +++d +l       +e+  + +  n l + v+  l++v++  ++v +++ ++s
  EHU00911.1 126 AAAILLLGFFTVKTILAIRRQLNAMRLTMEQASENLDLTLkaddtrsDEIGLTAKAFNHLIQTVSLSLNAVESAAQSVSTASSQMS 211
                 89****************99999999999999966666651111111677777788888888888888888888888888887766 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00091
      DUF948  20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 + +  +++++ ++ +++ +e+ ++++++ + ++ a  ++l +  +e+ +++++  +++ +l+e+v++
  EHU00911.1 178 TAKAFNHLIQTVSLSLNAVESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQ 244
                 6677899999*******************************************************87 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.0018
      DUF948  27 tldeaaatieelekqvdpilkevedllakvnelledvneklekvdplte 75 
                    e+++   +l k++++i+++++d ++++ +++ d++e ++k+  +++
  EHU00911.1 244 QTAENTRLASQLAKNAREISEDSADRVKTMLTTMGDIRESSAKITDIIS 292
                 1122333344444666666666666666666666666666666666555 PP

  == domain 6  score: 4.2 bits;  conditional E-value: 0.044
      DUF948  23 klkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplt 74 
                 k+++ ++++++ ++e+             + ++  +  ++v+  ++++d +t
  EHU00911.1 370 KMNDAVRQVTDLVDEIS-----------VAAQEQSQGISQVHLAVNQMDDVT 410
                 22222222222222222...........222222222222333333333333 PP

>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.7   2.1e+03      11     109 ..      14      44 ..       3      80 .. 0.58
   2 ?   13.1   0.3   6.6e-05     0.079      11      98 ..     228     315 ..     218     323 .. 0.71
   3 ?   -3.2   0.0       6.5   7.8e+03      69      83 ..     378     392 ..     360     438 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
   EcoEI_R_C  11 ieenkdsidaLqiiwsdreltkellkeLeekLkepppgitpealweayellekkvspqltdlidlirkiagldeeletrserverafkrwikekkftee 109
                 +++  ++i aL + +  ++++ e+ +                                                                    + te+
  EHU00911.1  14 VNDTIKHIRALNQHYLAEDTSNEQDR--------------------------------------------------------------------QMTEK 44 
                 44444444444444443333333333....................................................................33333 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.6e-05
   EcoEI_R_C  11 ieenkdsidaLqiiwsdreltkellkeLeekLkepppgitpealweayellek.kv...spq.ltdlidlirkiagldeeletrserverafk 98 
                 +e+ ++s+ +L+   ++     +l  +L++      + i+++   ++  +l + +    s+  +td+i+li  ia++  +++    +ve+a++
  EHU00911.1 228 LEQTAASMSELSETVRQTAENTRLASQLAKN----AREISEDSADRVKTMLTTmGDireSSAkITDIISLIEGIAFQ-TNILALNAAVEAARA 315
                 5666666666666666554444444455444....7788887777777777665557645558**************.679999999999875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.5
   EcoEI_R_C  69 ltdlidlirkiagld 83 
                 +tdl+d i  +a ++
  EHU00911.1 378 VTDLVDEISVAAQEQ 392
                 466666665555444 PP

>> DUF2096  Uncharacterized protein conserved in archaea (DUF2096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00033       0.4      13      70 ..       2      59 ..       1      72 [. 0.80
   2 ?   -1.5   0.0         2   2.4e+03      11      32 ..     251     272 ..     216     283 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
     DUF2096 13 sdLkkrgkevpkevlenlrlaktiinfYkldphapdlikel.kkaekelneiqeaLldl 70
                +dL ++   + kev++ ++ ++++ ++Y  +++ ++  +++ +ka +++n+i++ L  +
  EHU00911.1  2 TDLARQ-AVIEKEVNDTIKHIRALNQHYLAEDTSNEQDRQMtEKAFTMINKIERDLPAF 59
                677766.889******************9877777666665278999******999654 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
     DUF2096  11 llsdLkkrgkevpkevlenlrl 32 
                 l+s+L k+ +e++++  +++++
  EHU00911.1 251 LASQLAKNAREISEDSADRVKT 272
                 5666666666666666665554 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.046        55      46     114 ..     143     211 ..     138     219 .. 0.77
   2 ?    7.9   4.2    0.0025       2.9      41      99 ..     194     252 ..     170     280 .. 0.60
   3 ?    4.1   2.1     0.038        46      38     113 ..     216     294 ..     210     299 .. 0.58
   4 ?    8.6   3.1    0.0016       1.9      38     112 ..     370     440 ..     362     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.046
     DUF1664  46 vskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                 + +ql+ +  +++++ ++L   ++  d++ de   ++k+ ++ +++v+  l+++++  +sv++a +++ 
  EHU00911.1 143 IRRQLNAMRLTMEQASENLDLTLKADDTRSDEIGLTAKAFNHLIQTVSLSLNAVESAAQSVSTASSQMS 211
                 566788888888888888888888888888888888888888888888888888888888888777765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0025
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlsei 99 
                 +aves ++++ + s++++a  ++Ls+r ++  ++l+++++  +e++e v +  e+++  
  EHU00911.1 194 NAVESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQTAENTRLA 252
                 45556666666666666666666666666666666666666666666665555555443 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.038
     DUF1664  38 slsdavesvskqleqvseslaatkrhLssrid..rvdkkld.eqkeiskeikeevtevredlseigedvesvkeavegl 113
                  ls   e+ + +leq  +s+++  +   +  +  r+ ++l  +  eis++ ++ v+++   + +i+e + ++ ++++ +
  EHU00911.1 216 DLSARTEEQAASLEQTAASMSELSETVRQTAEntRLASQLAkNAREISEDSADRVKTMLTTMGDIRESSAKITDIISLI 294
                 4555555556666666655555444444433311344454414557777777778888888888887777777777655 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0016
     DUF1664  38 slsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                  ++dav +v    +++ ++++ + ++ s+ i +v   ++++ +++++ ++ v+e+++  +++ e+ ++++++v +
  EHU00911.1 370 KMNDAVRQV----TDLVDEISVAAQEQSQGISQVHLAVNQMDDVTQQNAALVEEASSASRSLMEQASALNRLVAT 440
                 455555555....55666677777888999999999999999999999999999999999999999999998876 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.4    0.0053       6.3      65     131 ..     180     247 ..     175     258 .. 0.80
   2 ?    3.6   0.2     0.047        56      83     129 ..     251     297 ..     240     311 .. 0.83
   3 ?    7.6   1.8    0.0027       3.2      37     131 ..     363     456 ..     347     464 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0053
  Sec8_exocyst  65 qaFnssiasYskilssiqesqekvselKesleeakkklstk.kkeLkelnarsakykevieiLdaiee 131
                   +aFn+ i++ s  l+++++++++vs    ++++ +++ls++ +++   l+++ a ++e+ e+  +  e
    EHU00911.1 180 KAFNHLIQTVSLSLNAVESAAQSVSTASSQMSAGNEDLSARtEEQAASLEQTAASMSELSETVRQTAE 247
                   68************************************765155667788877777777776666555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.047
  Sec8_exocyst  83 esqekvselKesleeakkklstkkkeLkelnarsakykevieiLdai 129
                    + +  ++ +e  e++   ++t   ++ ++ ++sak +++i++++ i
    EHU00911.1 251 LASQLAKNAREISEDSADRVKTMLTTMGDIRESSAKITDIISLIEGI 297
                   5666678888889999999999999*****************99877 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0027
  Sec8_exocyst  37 GlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKesleeakkklstkkkeLkelnarsakykevieiLdaiee 131
                   G + ++++ ++  +q+ + ++e+  +  q  +++i+  + +++++++ +++ ++l e+ ++a ++l ++ + L+ l a+ + ++   + L++++ 
    EHU00911.1 363 GVGTNMHKMNDAVRQVTDLVDEISVAA-QEQSQGISQVHLAVNQMDDVTQQNAALVEEASSASRSLMEQASALNRLVATFVIQRAGPDALKEVKS 456
                   556788888999999998888886554.55589********************************************999887777777776665 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.059        71       6      57 ..      10      56 ..       8      71 .. 0.69
   2 ?   -0.1   0.1       1.2   1.4e+03      35      35 ..     136     136 ..      83     190 .. 0.49
   3 ?   14.0   5.7   4.5e-05     0.054       3      98 ..     182     273 ..     180     274 .. 0.87
   4 ?    1.4   0.7      0.39   4.6e+02      55      74 ..     376     394 ..     321     446 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.059
  Syntaxin-6_N  6 vkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdl 57
                  +++eV+++++ +++l + +    edt   ++e+ ++ +++  + +++ie dl
    EHU00911.1 10 IEKEVNDTIKHIRALNQHYLA--EDT---SNEQDRQMTEKAFTMINKIERDL 56
                  6899***************75..222...24444444445556666666666 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
  Syntaxin-6_N  35 t 35 
                   t
    EHU00911.1 136 T 136
                   2 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.5e-05
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevkem 98 
                   F+   + V  sln +es  ++ +   ++ s + +e+l+  ++e  ++l++    +++L etv   ++  ++ ++ ++  ++ r++ e+  ++vk+m
    EHU00911.1 182 FNHLIQTVSLSLNAVESAAQSVSTASSQMS-AGNEDLSARTEEQAASLEQTAASMSELSETV---RQTAENTRLASQLAKNAREISEDSADRVKTM 273
                   6677789999************97555544.569****************************...7777779999999999999999999999988 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.39
  Syntaxin-6_N  55 wdledLeetvriveknpskf 74 
                    ++ dL + ++++ +++   
    EHU00911.1 376 RQVTDLVDEISVAAQEQ-SQ 394
                   34444444444443332.22 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.9   2.3e+03      58      75 ..       8      25 ..       4      62 .. 0.60
   2 ?    8.7   0.2    0.0014       1.7      41     112 ..     204     276 ..     182     300 .. 0.80
   3 ?    1.1   0.1      0.33     4e+02      56     102 ..     367     414 ..     358     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
        TssO 58 kelkkkvdsiykkIdsLk 75
                 +++k+v  + k+I  L+
  EHU00911.1  8 AVIEKEVNDTIKHIRALN 25
                445555555555554443 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
        TssO  41 eil.lkelerkkkfeekqkelkkkvdsiykkIdsLkpevnavfleneIkkdlndikntygknssdeRykmyaq 112
                      ++   ++++  + +e++  ++++ + ++ L+  v +  ++  +  +l + +  ++++s d+ + m + 
  EHU00911.1 204 STAsSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQTAENTRLASQLAKNAREISEDSADRVKTMLTT 276
                 4442444567889999*************************************************95555444 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.33
        TssO  56 kqkelkkkvdsiykkIdsL.kpevnavfleneIkkdlndikntygkns 102
                   ++++++v ++   +d +  + + +++  ++++  +n++ ++ ++n+
  EHU00911.1 367 NMHKMNDAVRQVTDLVDEIsVAAQEQSQGISQVHLAVNQMDDVTQQNA 414
                 56789999999999999999999999*************999998875 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         2   2.3e+03      72     105 ..      13      46 ..      10      69 .. 0.63
   2 ?   13.5   3.4   2.6e-05     0.031      56     146 ..     193     282 ..     182     295 .. 0.88
   3 ?    2.9   0.8     0.046        55      56     133 ..     354     431 ..     343     436 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2
    ISG65-75  72 kvdyyvekleslleeakekgtltesdaeklkkac 105
                 +v+ + +++++l +   ++ t++e+d +  +ka+
  EHU00911.1  13 EVNDTIKHIRALNQHYLAEDTSNEQDRQMTEKAF 46 
                 4566666666666665556666665554444444 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.6e-05
    ISG65-75  56 lketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkakeaakkAlGeele 146
                 l+ ++ +++++ +a ++ ++  e+l +++ee+ +  + t++ + +l ++++++ + ++ a++ ak+a+e+ e++++++k+   +++G+  e
  EHU00911.1 193 LNAVESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQTAENTRLASQLAKNAREISEDSADRVKTML-TTMGDIRE 282
                 7889999*************************99*******************************************99875.46777544 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.046
    ISG65-75  56 lketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskka 133
                 ++    +++ + ++++k +  v ++ +l++e    ++ +++ + ++  a+++  ++++++ + +++a ++ ++++++a
  EHU00911.1 354 VEAGAVQAEGVGTNMHKMNDAVRQVTDLVDEISVAAQEQSQGISQVHLAVNQMDDVTQQNAALVEEASSASRSLMEQA 431
                 555566677788899999999999999999988888888888888888888888888888888888877777666655 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         3   3.6e+03      44      71 ..     132     159 ..     116     167 .. 0.70
   2 ?    9.1   8.0    0.0014       1.7      13      86 ..     176     248 ..     169     250 .. 0.87
   3 ?    0.1   0.1      0.95   1.1e+03      24      61 ..     275     312 ..     249     319 .. 0.53
   4 ?    9.4   4.0    0.0012       1.4       7      78 ..     324     398 ..     322     414 .. 0.90
   5 ?   -0.8   0.2       1.9   2.2e+03      12      37 ..     406     431 ..     397     445 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3
  T7SS_ESX_EspC  44 hGpicaatndavaaaeaarraagealaa 71 
                     G ++++t +a++  + a r ++e+  +
     EHU00911.1 132 LGFFTVKTILAIRRQLNAMRLTMEQASE 159
                    5777777888887777777777777654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
  T7SS_ESX_EspC  13 relaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaa 86 
                       a+ ++   ++++ +++a+ + +a+++++  +  +a n +++a  + ++a++e++aa+++eL++ +r++A++
     EHU00911.1 176 GLTAKAFNHLIQTVSLSLNAV-ESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQTAEN 248
                    556777777888888889999.77788888889999************************************85 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.95
  T7SS_ESX_EspC  24 aeiasavaaaagasaavldshGpicaatndavaaaeaa 61 
                    +++ + ++++a+ ++ ++   G+ ++   +a++aa++a
     EHU00911.1 275 TTMGDIRESSAKITDIISLIEGIAFQTNILALNAAVEA 312
                    33444444444445555555555555555555555555 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0012
  T7SS_ESX_EspC   7 Vdpdhlrelaakhdevaaeiasavaaa...agasaavldshGpicaatndavaaaeaarraagealaaasteLad 78 
                    V+++++r la++  + a ei+++ +++   ++a+a  ++  G+   ++ndav+++ ++ ++   a +++s+++++
     EHU00911.1 324 VVAGEVRNLAQRSSSSAREIKALIESSmgfVEAGAVQAEGVGTNMHKMNDAVRQVTDLVDEISVAAQEQSQGISQ 398
                    99***********************9944455666677789********************99999999999986 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.9
  T7SS_ESX_EspC  12 lrelaakhdevaaeiasavaaaagas 37 
                    +  + ++  + ++e++sa ++  +++
     EHU00911.1 406 MDDVTQQNAALVEEASSASRSLMEQA 431
                    44444444555555555555443333 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.2   0.00016      0.19      93     169 ..     191     267 ..     102     294 .. 0.84
   2 ?    0.8   0.4      0.13   1.6e+02     108     163 ..     385     419 ..     343     456 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
      Tweety  93 qltyslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselpflkkkdv 169
                   ++++++a + +++ ++++s+ +e+l+ + ee+ ++le+  a+  +l et+r++ e+++ + q +++ + +++ + 
  EHU00911.1 191 LSLNAVESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQTAENTRLASQLAKNAREISEDSA 267
                 456788899999********************************************999988888887776655433 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
      Tweety 108 ikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselp.f 163
                 i+   +e+++                       ++ ++l+ +q++ v+qq ++l+  
  EHU00911.1 385 ISVAAQEQSQ----------------------GISQVHLAVNQMDDVTQQNAALVeE 419
                 2222222111......................2222222222222222222222211 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.41   4.9e+02      39      75 ..      13      52 ..       2      60 .. 0.49
   2 ?   -0.6   0.2         1   1.2e+03      10      66 ..     159     198 ..     138     211 .. 0.39
   3 ?    7.3   7.5    0.0037       4.4       5      99 ..     200     294 ..     192     298 .. 0.80
   4 ?   -3.6   0.1       8.9   1.1e+04      89     100 ..     337     348 ..     328     350 .. 0.59
   5 ?   12.8   3.0   7.3e-05     0.087       5      71 ..     368     434 ..     365     458 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.41
                XXXXXXXXXX...XXXXXXXXXXXXXXXX--TTTTTGGGH CS
  Laminin_II 39 sveetnekvk...dankairdArrsvkkLeklapqLldkl 75
                +v+ t ++++   +   a +  +++ ++++++a  +++k+
  EHU00911.1 13 EVNDTIKHIRalnQHYLAEDTSNEQDRQMTEKAFTMINKI 52
                2223333222000223344445555556666665555555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- CS
  Laminin_II  10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLek 66 
                 e +  +l+     s ++  t                 +k++n+ i+ ++ s   +e 
  EHU00911.1 159 ENLDLTLKADDTRSDEIGLT-----------------AKAFNHLIQTVSLSLNAVES 198
                 22222333333333333333.................33333333333333333333 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0037
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHH CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelI 99 
                 a++++   ++  +  ++ls+++e+  ++l++ ++s+ e  e v++  + +r+A++  k+  +  ++  d++k++ +        s++i  i  lI
  EHU00911.1 200 AQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQTAENTRLASQLAKNAREISEDSADRVKTMLTTMGDIRESSAKITDIISLI 294
                 55555556667778899**************************************9999999999999998876555544444577777777666 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 8.9
                 HHHHHHHHHHHH CS
  Laminin_II  89 sdniseikelIa 100
                 s +  eik+lI+
  EHU00911.1 337 SSSAREIKALIE 348
                 445567777776 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 7.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTT CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqL 71 
                 +++ n+ + +v + + ++s+  ++ ++ +s+++  v++++++ ++    +++A+++++ L ++a  L
  EHU00911.1 368 MHKMNDAVRQVTDLVDEISVAAQEQSQGISQVHLAVNQMDDVTQQNAALVEEASSASRSLMEQASAL 434
                 5678999*******************************************************99876 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.16   1.9e+02      89     111 ..       6      28 ..       2      62 .. 0.68
   2 ?    2.7   1.8      0.11   1.3e+02      32      89 ..     188     245 ..     173     264 .. 0.50
   3 ?    4.1   2.4      0.04        48      38      97 ..     222     280 ..     207     314 .. 0.52
   4 ?    7.0   0.4    0.0051       6.1      30      87 ..     368     425 ..     361     453 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.16
                 CCCHHHHHHHCCHHHHHHHHHHH CS
   Fib_alpha  89 eilrlketidaqesnirvLqnvl 111
                 +++ +++++++++++ir+L + +
  EHU00911.1   6 RQAVIEKEVNDTIKHIRALNQHY 28 
                 55667777777777777776554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
                 CCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Fib_alpha  32 dvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleee 89 
                 +v+ +l+ +e+  +++s  +++++   ++++  ++e+ +s +++   ++++s+++++ 
  EHU00911.1 188 TVSLSLNAVESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRQT 245
                 4444455555555555555555555555555555555555554455555555555532 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.04
                 CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH CS
   Fib_alpha  38 ekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketi 97 
                 e+   +le+ + s +e +e+v+++ + +r + + +k+  ++ ++s+++++  +l+    i
  EHU00911.1 222 EEQAASLEQTAASMSELSETVRQTAENTRLASQLAKNAREISEDSADRVK-TMLTTMGDI 280
                 55555566666666666666666666555555555544444444444444.222222233 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0051
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskele 87 
                  +++++ ++++++ ++eis   +e ++ +++++  +++    +++n  ++++ s+  +
  EHU00911.1 368 MHKMNDAVRQVTDLVDEISVAAQEQSQGISQVHLAVNQMDDVTQQNAALVEEASSASR 425
                 5678888888889999998888888888888888888888888888555555444322 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2         1   1.2e+03      73      88 ..      40      55 ..       7     128 .. 0.47
   2 ?    8.2   1.7    0.0011       1.3      10      88 ..     192     273 ..     184     307 .. 0.63
   3 ?    3.1   0.1     0.038        45      16      79 ..     366     431 ..     355     449 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
       TMPIT 73 eelkerkkvlkevesl 88
                ++++++ ++++++e  
  EHU00911.1 40 QMTEKAFTMINKIERD 55
                1112222222222222 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0011
       TMPIT  10 efkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlk.evesl 88 
                 +++++e++a+++ + + ++s+ ++++s ++++q   l++  +s+++l+++v+  +e+ + +++l+++ +e+++  + +v+ +
  EHU00911.1 192 SLNAVESAAQSVSTASSQMSAGNEDLSARTEEQAASLEQTAASMSELSETVRqtAENTRLASQLAKNAREISEDSAdRVKTM 273
                 5556666666666666666666666666666666666666666666666644334445555555555555554444233333 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.038
       TMPIT  16 etakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeevee...lkeelkerk 79 
                 ++ ++++  +++++ l +++s ++++q++ +++++ ++++++  + ++++  vee    +++l+e+ 
  EHU00911.1 366 TNMHKMNDAVRQVTDLVDEISVAAQEQSQGISQVHLAVNQMDDVT-QQNAALVEEassASRSLMEQA 431
                 556677888889999999999999999999999999988887653.333333333000333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2096  (0.116906); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 3497.31
//
Query:       EHU00912.1  [L=232]
Description: hypothetical protein CKS_3507 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.7   0.1       0.03   14.9   0.1    1.5  1  CHAP      CHAP domain


Domain annotation for each model (and alignments):
>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.7e-06      0.03       9      71 ..      96     179 ..      86     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-06
                 SHHHHHHHHHHHHS...............SSSSSS.ECTCCHHC..EEEEEECSTBS-..-TTEEEEEETTTTBC..T-EEEEEE CS
        CHAP   9 qCvefaywrlrqag...............gnaddW.nnakkakg..yknqanvgsstp..kvGdivvfdrggegg..yGHVaiVe 71 
                  C +fa+ +  ++g               ++++ W ++++ + +  + + + +++ ++  + G +vv+   +  +   GH+a+V 
  EHU00912.1  96 HCSAFAAAVGARLGvymlrppqhsqiflaSAQTRWfDSSEGR-QsgWIRVSDAWHAQQlaNKGMLVVVAYESPDQhrPGHIAVVR 179
                 699999777555556666666666666665689995333333.2357777777776644479**99998776555678******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1773.58
//
Query:       EHU00913.1  [L=418]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-39  134.7  63.2    5.6e-31  107.7  36.3    2.0  2  MFS_1     Major Facilitator Superfamily
    2.6e-10   39.3  21.0    1.3e-07   30.5   4.2    2.1  2  MFS_3     Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7  36.3   6.2e-35   5.6e-31       2     339 ..      30     361 ..      29     361 .. 0.83
   2 !   40.8  18.9   1.5e-14   1.3e-10      30     172 ..     265     405 ..     253     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 6.2e-35
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlg 98 
                 l+ ++++ +++++++p++ +++++++++sp +ig ++t  al+++ + + +G +sdr+Grr +ll+g  ++a+g ++ll a  +++ l++ + ++ G++
  EHU00913.1  30 LIFTLIIRFSYFMAWPFIAMIMTQNYHMSPVAIGCAMTSSALVSVGLGMYGGQISDRLGRRIILLMGCGFSAVG-YILL-AqaTGVGLFITGLMIIGVC 126
                 7889999*******************************************************************.7777.3349999************ PP

       MFS_1  99 agalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                  +++ p   al++d+  + ++r++a+ + +  ++++a+lgpl+g ++  + +  ++f+i ++ ++ +f+ +ll++p+ +p + ++++k          l
  EHU00913.1 127 FAWVDPPLRALMSDLLGDrRRRALALQVRYYLVNVAAVLGPLVGIAFG-LTSQKGTFLITGLSYFPFFIYVLLFIPAGKPVNTPPADKVS-----AVRL 219
                 ******************99***************************9.999***************99866777666666666665555.....2222 PP

       MFS_1 197 vp.awkallkdpvlw.illialllfffgfsg..lltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalg 290
                    + +++ +d+ +   ll++ l+  ++  +  + + lp y    l+ + ++ l++l+l   a  +++++ ++ r++ r+    r+ll+ ++++++ l+
  EHU00913.1 220 -HqVMGIIIRDKIFVaGLLCSTLCS-IV--FihFEAVLPQY-LLLLNSDaAVKLVTLILVTNASTVLVFQTFLVRIMARMHLPQRILLGAVIFFFSQLC 313
                 .146889999996633333333333.23..13577777777.555555554444444455555555556779999999999999999999999999999 PP

       MFS_1 291 lallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasg 339
                 ++ l ++ +++l+l v vl++ g ++ +p l+ l+++lap+e++g+++g
  EHU00913.1 314 FFSLRTA-DSWLWLSVTVLFSAGEAILMPNLNILLDQLAPAEHRGAYLG 361
                 9999999.55555559999**************************9987 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.5e-14
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraig 124
                 ++  + l+l++ a + +v++ +l r++ r+ + +  +llg+++f+++  l++f+   + +wl+l + vl ++g+++l+p+ ++l+ +++p e+rg ++g
  EHU00913.1 265 AVKLVTLILVTNASTVLVFQTFLVRIMARM-HLPqRILLGAVIFFFS-QLCFFSlrtADSWLWLSVTVLFSAGEAILMPNLNILLDQLAPAEHRGAYLG 361
                 4555778888899999*************9.5555888888888888.444444456999**************************************7 PP

       MFS_1 125 llsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                   s+ + lG++ gpllgg++++  g ++vf+  a +sll++ +  +++
  EHU00913.1 362 A-STLSTLGIAAGPLLGGVMLAMTG-PGVFISTAMLSLLLCAI--IYV 405
                 6.56699**************7766.9*************664..554 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   4.2   1.4e-11   1.3e-07      19     202 ..      33     213 ..      20     221 .. 0.82
   2 !   14.9   8.9   7.2e-07    0.0064      42     191 ..     264     407 ..     227     417 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.4e-11
       MFS_3  19 slvsnlGtliqevaasWlmtd.isasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiG 116
                 +l+  +  ++    ++ +mt+  + sp+++     +++L  + l +  G ++D + rR +ll++  + a++ +ll+  + +gl+   l     ++ig+ 
  EHU00913.1  33 TLIIRFSYFMAWPFIAMIMTQnYHMSPVAIGCAMTSSALVSVGLGMYGGQISDRLGRRIILLMGCGFSAVGYILLAQATGVGLFITGL-----MIIGVC 126
                 5566666666666778888853799****************************************************99999875444.....557889 PP

       MFS_3 117 aalndPaWqAsvgelvkrrd.vpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsyl.alivallrwkrevrksslprEk 202
                 +a  dP  +A +++l+  r     A  +    +n+a   GP + G+   +     +f ++ lsy+ + i++ll +   ++ ++ p++k
  EHU00913.1 127 FAWVDPPLRALMSDLLGDRRrRALALQVRYYLVNVAAVLGPLV-GIAFGLTSQKGTFLITGLSYFpFFIYVLLFIPAGKPVNTPPADK 213
                 9**************976550444666777889********65.79999999************955677777777666666666655 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 7.2e-07
       MFS_3  42 asplmvAlvqaaatLP.ifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpa 139
                 a+   v l+ ++ +   +++ + l+ ++a  +   ++ll + ++  +       +  l   + wl l +t+l + G a+ +P  +  +++l ++++  a
  EHU00913.1 264 AAVKLVTLILVTNASTvLVFQTFLVRIMARMHLPQRILLGAVIFFFSQLC----FFSLRTADSWLWLSVTVLFSAGEAILMPNLNILLDQLAPAEHRGA 358
                 44455565555444430344567778888888888888888877765433....334667899**********************99999887766544 PP

       MFS_3 140 ...AvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkr 191
                    A +L+++gi    ++GP lgGv++a+ G+ +  + + ls l   +a++ ++r
  EHU00913.1 359 ylgASTLSTLGI----AAGPLLGGVMLAMTGPGVFISTAMLSLLL--CAIIYVNR 407
                 222667777766....89**************9888777777653..34443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3315.35
//
Query:       EHU00914.1  [L=357]
Description: putative periplasmic binding protein/LacI family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-17   62.2   0.3    1.9e-15   57.6   0.1    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    4.1e-13   49.4   0.0    5.7e-13   48.9   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.7e-06   27.1   1.1    6.7e-06   25.8   0.4    2.0  2  LacI          Bacterial regulatory proteins, lacI family
    0.00031   20.4   0.0    0.00051   19.7   0.0    1.3  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.024   15.0   0.0      0.063   13.6   0.0    1.7  1  HTH_31        Helix-turn-helix domain
      0.026   14.6   0.0      0.057   13.5   0.0    1.6  1  HTH_3         Helix-turn-helix
      0.084   12.7   0.0       0.23   11.3   0.0    1.8  1  HTH_IclR      IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.057   1.5e+02      19      91 ..      72     138 ..      56     143 .. 0.72
   2 !   57.6   0.1   7.5e-19   1.9e-15       2     166 .]     173     338 ..     172     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.057
                   TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEE.SSCCHHHHHHH CS
  Peripla_BP_3  19 gdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAvia.asDelAlgvlq 91 
                    +rg++++ e++rg ++a++++ +    ++  +++++++  +++a      ++ +  +A+i+  +D +A+  l+
    EHU00914.1  72 APRGDHFYLEVTRGIAEACASHDVHISYCPLEEQRADVKLFLEKAG-----AKSN--DAIIIiGTDDQAIFSLA 138
                   567788889999*********9999999999888887777777666.....3333..55444366766665554 PP

  == domain 2  score: 57.6 bits;  conditional E-value: 7.5e-19
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-...S-SS-SSHHHHH.......HHHHHCC...-SEEEEESSCCHHHHHH CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvv...aaddpaaaaaaraal..llqalklaa...lPtAviaasDelAlgvl 90 
                   +hL e+Ghrr+  ++     + ++  +r++g ++a ++  lp+ +       ++ ++ +++a+  l  +l++         P+ ++     +  gv 
    EHU00914.1 173 QHLFEQGHRRVLTVT---CLRRETLFLRLEGIKDAYRHFHLPFSAQKDlivVEAYSEHETEAA--LngWLDEH---PreeWPDVIVPVGKGIITGVQ 261
                   8**************...555677889999999999999999544333000222222222333..23355333...1233589************** PP

                   HHHCCTT--TTTTEEEEBSS.--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  91 qalreaglrvPedlsvigfd.dselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   ++l+++ lr+Ped+s++  d  s la+ +  p+T +++p++elG++a++ll  +l+ ++ap  + ll  +l   +++
    EHU00914.1 262 TVLAARSLRIPEDISLMTTDlASQLAGAAGRPVTGFAVPCRELGYEAIQLLQNRLNRPHAPVYNLLLQAKLSDHGTV 338
                   ******************99566666999999*********************************999999988875 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.2e-16   5.7e-13      14     265 ..      77     322 ..      70     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.2e-16
                   HHHHHHHHHHHHHHHHHTEEEEEEE-SSH.HHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS-EEEE-HHHHHHH CS
  Peripla_BP_1  14 Pffldlvkgitkaakehgvdvlllaagee.edlakaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvPcvipddtqagee 108
                    f+l+++ gi +a + h+v +   + +e+ +d++  ++   ak  d++ii + d++  +i   a+s + p ++++   d++  ++ v pd   +g  
    EHU00914.1  77 HFYLEVTRGIAEACASHDVHISYCPLEEQrADVKLFLEKAGAKSNDAIIIIGTDDQ--AIFSLAASlNKPCVLINSR-DKDMKLDAVSPDHHAIGFS 170
                   59*******************9999876526777999**************99999..9**999999*******999.9999*************** PP

                   HHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-..GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-S...EEE-SSHHHHHHHHHHHH CS
  Peripla_BP_1 109 stqkLiaeghkrpiallegpesaltakervqGflaalaeaGl..evkdvhvalgsndiedaaealnelleshPeid...aivaindeaalGavlalk 200
                   + q+L ++gh+r ++ +   + + t   r +G  +a + + l    +++ +     + ++ + aln  l +hP  +   +iv     +  G   +l 
    EHU00914.1 171 AMQHLFEQGHRR-VLTVTCLRRE-TLFLRLEGIKDAYRHFHLpfSAQKDLIVVEAYSEHETEAALNGWLDEHPREEwpdVIVPVGKGIITGVQTVLA 265
                   ************.7555554443.5667899*********995555777788888888889999********7644666************888888 PP

                   HTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE CS
  Peripla_BP_1 201 keGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkereh 265
                   ++  l+i+e++     s++  d     q  +  + p++   +p ++lG++a + + +  n+  + 
    EHU00914.1 266 ARS-LRIPEDI-----SLMTTDLA--SQLAGAAGRPVTGFAVPCRELGYEAIQLLQNRLNRPHAP 322
                   888.*******.....44444433..455777899****************99999987655555 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.4   2.6e-09   6.7e-06       2      42 ..       7      47 ..       6      48 .. 0.93
   2 ?   -1.7   0.0         1   2.6e+03      20      32 ..     332     344 ..     331     348 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.6e-09
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameeln 42
                ++++  + G S++TVSrvL++k + se+ r+ + + +++l+
  EHU00914.1  7 MDEISAKTGYSVSTVSRVLSGKAYTSEKARNAIVRCARQLG 47
                788889999**************************999986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                 CTTSSSSTHHHHH CS
        LacI  20 LnnkerVseetre 32 
                 L+++++V+ +tr+
  EHU00914.1 332 LSDHGTVANATRH 344
                 678999*****98 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     2e-07   0.00051       9     221 ..      75     285 ..      70     318 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2e-07
                   STCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HH CS
  Peripla_BP_4   9 snpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdne 105
                   ++ f  +++ g+ ea++   +   +  + e + a+ + ++e+a ak  d+ii+  +d +a+      a++ + p v ++s   +++ +l  v+ d +
    EHU00914.1  75 GDHFYLEVTRGIAEACASHDVHISYC-PLEEQRADVKLFLEKAGAKSNDAIIIIGTDDQAIF---SLAASLNKPCVLINSR--DKDMKLDAVSPDHH 165
                   45566669999999999988888886.88888899999*******************96655...445555569*******..9************* PP

                   HHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.......-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT....ECEEEESS CS
  Peripla_BP_4 106 aaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.......ypgikivaevaganwdaekaqqalealltanp....ldgilaan 191
                   a+G  +++ l e+   +  +v      +      +r+eg++++ +         +++ +v+      +++ ++  al+ +l ++p     d+i+ ++
    EHU00914.1 166 AIGFSAMQHLFEQGHRRVLTV----TCLRRETLFLRLEGIKDAYRHfhlpfsaQKDLIVVE-----AYSEHETEAALNGWLDEHPreewPDVIVPVG 253
                   **************9883333....445888899*********666666666355999998.....89**************88668899******* PP

                   CCHHHCHHHHHHHTTT..TSTEEEEEES-HHH CS
  Peripla_BP_4 192 dgmaegalealeaagl..agkvvvtgqDatpe 221
                    g+  g+ + l+a  l    ++ +++ D+ ++
    EHU00914.1 254 KGIITGVQTVLAARSLriPEDISLMTTDLASQ 285
                   ******99999998776555555777776554 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.063      15      52 ..       5      41 ..       2      53 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlealar 52
                L+ +e  + +g+s+st+sr+ +G+    s+ + +a++r
  EHU00914.1  5 LRMDEISAKTGYSVSTVSRVLSGKAY-TSEKARNAIVR 41
                8999*********************7.87775555544 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.2e-05     0.057       9      34 ..       4      32 ..       2      51 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
                THHHHHHHHHHTSSHHHHHHHHTT...SS CS
       HTH_3  9 glsqeeLAeklGvsrstisriEnG...er 34
                +l + e+++k+G s+st+sr  +G    +
  EHU00914.1  4 KLRMDEISAKTGYSVSTVSRVLSGkayTS 32
                577899******************44444 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.8e-05      0.23      17      40 ..       3      26 ..       1      27 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.8e-05
                SS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 17 qeltlselArrtglpkStvhRlLq 40
                + l+  e++++tg + Stv+R L+
  EHU00914.1  3 GKLRMDEISAKTGYSVSTVSRVLS 26
                568899***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2726.20
//
Query:       EHU00915.1  [L=389]
Description: oxidoreductase domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-30  105.2   0.3    7.7e-30  104.2   0.3    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    8.8e-12   45.1   0.3    1.7e-11   44.2   0.3    1.5  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
     0.0007   20.2   0.1     0.0013   19.4   0.1    1.4  1  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain
     0.0011   19.5   0.1     0.0025   18.4   0.1    1.6  1  CoA_binding     CoA binding domain
     0.0021   18.6   0.0     0.0057   17.2   0.0    1.8  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.3   2.1e-33   7.7e-30       1     118 [.       2     123 ..       2     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 2.1e-33
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCT.TESEEEE-S-GGGHHHHHHHHHHTT-EEEEES CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladp.eidavivatpngtheelakaaleagkhvllEK 93 
                   l++ai+G+G+i+  h++++ +  ++ ++va++d  + +a++  +++g++   +ysd+ ++lad  +id+v v+tp++ h+e ++aal+agkhvl+EK
    EHU00915.1   2 LKIAIVGMGNIANLHIQAFLQFPERGKIVAVVDVYPDKARDKLQRYGLKdvrVYSDHLAMLADGaDIDVVDVCTPPYVHAENTIAALQAGKHVLCEK 98 
                   589**********************************************999************9******************************** PP

                   SS-SSHHHHHHHHHHHHHHTS-EEE CS
  GFO_IDH_MocA  94 Plattveeakelvelaekkgklvsv 118
                   P+a+++ee+++++++ + +gk++sv
    EHU00915.1  99 PMAASLEECDAMIAAQKASGKVLSV 123
                   **********************998 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.3   4.6e-15   1.7e-11       1     108 [.     137     240 ..     137     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 4.6e-15
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH.HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEET CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekg 94 
                     K+++++g  G++ + +v+ l+ r +a++  +w++   k++gG + ++++H+iD lqw +G+p  vva+    + + ++ae+ed+     + + + 
      EHU00915.1 137 KAAVDSGLAGKICHAQVDSLWWRGHAYYDLWWRGTWeKEGGGCTLNHAVHHIDALQWMLGAPTDVVAMMS--NVAHDNAEVEDLS---AAIFRYP 226
                     77889999999999999999988888888888877789*******************************6..6666677777777...6777777 PP

                     TEEEEEEEECCTSS CS
  GFO_IDH_MocA_C  95 sgevitlesgvskg 108
                     +g +++l+++v + 
      EHU00915.1 227 NGTLAQLTASVVHH 240
                     77777777766655 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   3.6e-07    0.0013       1     112 [.       8     119 ..       8     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.6e-07
                    --SHHHHHHHHHHHH---SSEEEEEEEEESS.EEE-TT.HHHHHT--CB---HHHHHHHH.S-EEEEE-.S--HHHHTTHHHHHHTTEEEE-S--C CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrd.sllskd.rkallasealtldlddliahl.dpdvvVEc.asseavaelvlkaLkagkdvvtankg 92 
                    G+G+i++  ++++++ +++   ++vav+d   ++++++     l++ ++++d  +++a+  d+d vV++ +++   ae   +aL+agk+v+     
     EHU00915.1   8 GMGNIANLHIQAFLQFPER--GKIVAVVDVYpDKARDKlQRYGLKDVRVYSDHLAMLADGaDID-VVDVcTPPYVHAENTIAALQAGKHVLCEKPM 100
                    99*************9996..555555555544455543777999****999999999553455.56766********************988777 PP

                    GGG-HHHHHHHTSSSTTS-- CS
  NAD_binding_3  93 aladealyeeLreaaeanga 112
                    a + ++  +++++a++a+g+
     EHU00915.1 101 AAS-LEECDAMIAAQKASGK 119
                    777.9999999999999986 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   7.1e-07    0.0025       5      88 ..       3      93 ..       1      96 [. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.1e-07
                 EEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEET.....TEEEESCHHHHHHHC.TTTEEEEES-HHHHHHHHHHHHHTT-S CS
  CoA_binding  5 kviviGagglgiagl.yhfkeklkygikavfgvnprkvgtevl.....glpvyksvdeleekt.evdvavitvPaesaqeavdelveagik 88
                 k++++G+g+ +        ++  + +i+av++v p+k+ ++ +     ++ vy +   + ++  ++dv  +++P+   +e ++++++ag  
   EHU00915.1  3 KIAIVGMGNIANLHIqAFLQFPERGKIVAVVDVYPDKARDKLQryglkDVRVYSDHLAMLADGaDIDVVDVCTPPYVHAENTIAALQAGKH 93
                 89*******97766656666777789*****************9*999*****66555555533566666777999999999999999865 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06    0.0057       1      81 [.       3      88 ..       3      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...-EEECECHHHHHH..H-SEEEE-S-HH.HHHHHHHHC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg...vkvtavdneeaae..eadvvvlavkpe.dveevlsel 81
                   ki+i+G+Gn++   ++ +l+   +  +iv + +  p+ka+   +++g   v+v + + + +a+  + dvv ++ +p+ ++e+++++l
     EHU00915.1  3 KIAIVGMGNIANLHIQAFLQFP-ERGKIVAVVDVYPDKARDKLQRYGlkdVRVYSDHLAMLADgaDIDVVDVCTPPYvHAENTIAAL 88
                   7***************999986.666777777****************999999988999999444467778888882455666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2996.97
//
Query:       EHU00916.1  [L=354]
Description: oxidoreductase domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-06   26.6   0.1    7.8e-06   25.9   0.1    1.4  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
    6.4e-06   27.0   0.0    2.4e-05   25.1   0.0    1.9  2  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   8.7e-10   7.8e-06       3      72 ..     158     225 ..     157     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 8.7e-10
                     HHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SE CS
  GFO_IDH_MocA_C   3 lIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmr 72 
                     l+e+g++G+vv+      + +++   +++w  +++  gG+l d+g+H+i +  + +G  +++v+a +  +
      EHU00916.1 158 LVEQGAIGRVVQTL--GTGPHREGTGRPDWFYQRRYFGGILCDIGSHQIEQFLYYTGNSQARVVASQVRN 225
                     89***********5..6777788888999999998999**************************997322 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.7e-09   2.4e-05      26     120 .]      48     143 ..      26     143 .. 0.87
   2 ?   -1.3   0.0      0.41   3.7e+03      15      52 ..     280     318 ..     269     348 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.7e-09
                   EEEEEEECSSHHHHHHHHHHT.THEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  26 eevvalldpdaeraeavaesf.gveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlattveeakelvelaekkgklvsvgy 120
                   + +  ++dpda + +++ ++f ++++ ++l+ +lad+++++v  a  +++  +l +++++agk+ + +K   t++e++++ +++++++g++++v y
    EHU00916.1  48 ATLKWVYDPDATKVDRFLQQFpQAQVADSLDTILADTQVRLVAGAAIPSERCALGLKVMAAGKDYFTDKAPLTSLEQLDDAKAMCARTGRKYAVYY 143
                   378889***********666616669999****************************************666********************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.41
                   HHHHHHHTTTTE.EEEEEECSSHHHHHHHHHHTTHEEES CS
  GFO_IDH_MocA  15 hlrplnesqrle.evvalldpdaeraeavaesfgveays 52 
                   ++r++ + +r+e +vv l+++d e    va + g++++ 
    EHU00916.1 280 EIRKYTDLTRDEqDVVYLVNQDGEFRYSVAGTVGFPFFG 318
                   555555555555588888888888777777777777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2523.68
//
Query:       EHU00917.1  [L=98]
Description: oligogalacturonide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-07   28.2   3.6    7.9e-07   28.0   3.6    1.1  1  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.011   14.7   5.0      0.028   13.4   4.9    1.5  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   3.6   8.8e-11   7.9e-07      35     117 ..       4      85 ..       1      89 [. 0.83

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8.8e-11
       MFS_2  35 vglvllvarlvDaitDpivGtlidktstrw.....GrrrPwlllsaiilavsiillftppelsqsakfiwllvtyillrilytlfeip 117
                 +g ++ +ar++D +  pi+G+++d+   +w     Grrr +ll+s +++   + +l+ + +     +  ++l ty+   +l +++ +p
  EHU00917.1   4 AGSIFAIARVIDSVLSPIMGYITDNFGHTWagrkfGRRRFFLLISSPLML-LYGALWVT-D----MSYWYYLGTYLTIELLSAMVLVP 85 
                 79999*******************97655555555***********9988.78888887.4....46788888999999988888877 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.9   3.1e-06     0.028      33      89 ..       3      69 ..       1      85 [. 0.55

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-06
       MFS_1 33 eigllltlyalgaavaslplGrlsd.........rfGrrr.vlllglllfalg.lllllfa.sslwlll 89
                e+g ++++  +  +v+s+++G+++d         +fGrrr +ll++  l++l  +l+   +  s+w+ l
  EHU00917.1  3 EAGSIFAIARVIDSVLSPIMGYITDnfghtwagrKFGRRRfFLLISSPLMLLYgALWV--TdMSYWYYL 69
                4556666666666777777777777666666665567777666666666666622222..233344322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 719.85
//
Query:       EHU00918.1  [L=363]
Description: oligogalacturonide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-28   98.2  23.6    5.1e-28   97.8  23.6    1.1  1  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.015   15.4   0.0    3.2  3  YbjM      Putative inner membrane protein of Enterobacteriace
      0.055   13.1   0.5        3.1    7.4   0.0    2.7  3  PepSY_TM  PepSY-associated TM region
        8.1    6.8   6.3        1.3    9.3   0.0    2.8  4  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8  23.6   1.1e-31   5.1e-28     140     426 ..       1     301 [.       1     302 [. 0.85

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.1e-31
       MFS_2 140 sflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervem..rkkekteqkeklslleqlkev.......frnraflil 229
                 +++s lg++la  ++++++  +g   +++ +y+++++i++++++++v+i++++t e +    +++ +++ + + ++l  +k++       f+ raf+  
  EHU00918.1   1 MMFSSLGSFLAVSVPGVIMTYTGK--DNAITYTLTGVIFSVIYCVAVFITWYTTWEAKDIqdADEVQKPPAPARHFLSHVKHMfvdlassFKIRAFRQH 97 
                 68999*************888886..******************************9987544444444444444444444431111111788****** PP

       MFS_2 230 lllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlg....kk.ntyllgalltivllvlvlll.qpsnlllflvll 321
                 ll++++ ++a+ v  + + Y++ y l+ ++s as++l  ++ +++ g++l+  l  r++    +  ++ +++++++++ l +v+l      +llf +++
  EHU00918.1  98 LLIYICSFTAMDVFLAVFTYFVIYGLKqDASLASLLLSNMMFMSIPGTFLFMLLLGRFSmtpsNAlRLSYISIAVVLLYLYGVYLWqWHVPVLLFSAAF 196
                 ***************************9999****99999******************97765444666666666666667777772333345555666 PP

       MFS_2 322 viagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqspqvvlalrllyavlpavlllvallll 420
                 +  g++ ++++++pw +++ + D +e+ t +rreg+f++  +++ k  ++i+++++g +L+ +g+ +++++q++++++a+ ll+  + ++ll+v+++l 
  EHU00918.1 197 LFMGIARAGLYYIPWNIYSFIPDIDEMVTRQRREGIFAGGMVLTRKSSVAIAIFIIGVVLQESGFAKGNGAQPDSAITAIVLLMVGVTGALLAVSFWLT 295
                 667899999****************************************************************************************** PP

       MFS_2 421 vrypln 426
                 ++++l+
  EHU00918.1 296 FQFKLT 301
                 ****98 PP

>> YbjM  Putative inner membrane protein of Enterobacteriaceae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   3.4e-06     0.015      44      84 ..      12      52 ..       5      58 .. 0.89
   2 ?   -1.6   1.1      0.66   2.9e+03      87     108 ..     127     147 ..      91     156 .. 0.44
   3 ?    1.6   0.2     0.068     3e+02      60      86 ..     279     304 ..     270     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.4e-06
        YbjM 44 fllPGivaallskekrllvpllGallaapvcllvlklvlas 84
                  +PG++++++ k++ ++++l+G++ ++ +c+ v+ ++ ++
  EHU00918.1 12 VSVPGVIMTYTGKDNAITYTLTGVIFSVIYCVAVFITWYTT 52
                568*******************************9999876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.66
        YbjM  87 slwqelayllSavFWcalGall 108
                 + +  l  l  ++F +  G++l
  EHU00918.1 127 ASLASL-LLSNMMFMSIPGTFL 147
                 222222.233344444444444 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.068
        YbjM  60 llvpllGallaapvcllvlklvlasee 86 
                 l+v ++Galla+ + +l +++ l++++
  EHU00918.1 279 LMVGVTGALLAVSF-WLTFQFKLTQRS 304
                 56778999999875.777777666544 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.014        62     185     285 ..      30     183 ..      27     186 .. 0.56
   2 ?    0.2   0.3      0.11   4.8e+02     132     146 ..     169     183 ..     161     214 .. 0.71
   3 ?    7.4   0.0    0.0007       3.1     177     206 ..     273     302 ..     271     358 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.014
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................................x RF
    PepSY_TM 185 lalTGlvwslaavlgaavkalvsegaaaaaaaaaaaaaaaaaaaa.....................................................e 230
                  +lTG+++s+     a + +++++ +a++ ++a++ ++++a+a++                                                      
  EHU00918.1  30 YTLTGVIFSVIYC-VAVFITWYTTWEAKDIQDADEVQKPPAPARHflshvkhmfvdlassfkirafrqhlliyicsftamdvflavftyfviyglkqdA 127
                 5778888864444.3445555544445555555555555555555667777777777777777777777777777777777777777777666443332 PP

                 xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 231 dladaslgdqslgakllewlyp......LHfGtffGlplril.lfllglalaalivtGlvlW 285
                 +la+  l++      ++ + +p      L  G+f  +p+  l l  +++a+++l++ G++lW
  EHU00918.1 128 SLASLLLSN------MMFMSIPgtflfmLLLGRFSMTPSNALrLSYISIAVVLLYLYGVYLW 183
                 222222222......22222223333336667775555444437778888888888888888 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
                 xxxxxxxxxxxxxxx RF
    PepSY_TM 132 allllvllvsGlilw 146
                 +++ ++l + G++lw
  EHU00918.1 169 SIAVVLLYLYGVYLW 183
                 455566666666666 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0007
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 177 wllpfllllalTGlvwslaavlgaavkalv 206
                 +++++ll++ +TG++++++ +l+ ++k + 
  EHU00918.1 273 ITAIVLLMVGVTGALLAVSFWLTFQFKLTQ 302
                 577888888888888887777777766544 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.63   2.8e+03      65      81 ..      34      50 ..      20      53 .. 0.58
   2 ?    9.3   0.0   0.00029       1.3      58      96 ..      90     128 ..      54     137 .. 0.80
   3 ?   -1.8   0.4      0.85   3.8e+03      64      84 ..     161     181 ..     156     183 .. 0.73
   4 ?   -3.4   0.0       2.7   1.2e+04      64      73 ..     274     283 ..     262     307 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.63
       Orf78 65 illisllavvcvlvlly 81
                 +++s++ +v+v++  y
  EHU00918.1 34 GVIFSVIYCVAVFITWY 50
                35555666666655444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00029
       Orf78  58 ekaqalnillisllavvcvlvllyviyYfvilrerqkss 96 
                 + +++ + lli++ ++ ++ v l v  Yfvi   +q  s
  EHU00918.1  90 KIRAFRQHLLIYICSFTAMDVFLAVFTYFVIYGLKQDAS 128
                 456678899**********************98887765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.85
       Orf78  64 nillisllavvcvlvllyviy 84 
                 n+l +s +++ +vl+ ly +y
  EHU00918.1 161 NALRLSYISIAVVLLYLYGVY 181
                 566777888888888888776 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.7
       Orf78  64 nillisllav 73 
                 +++++ ++ v
  EHU00918.1 274 TAIVLLMVGV 283
                 3333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2708.03
//
Query:       EHU00919.1  [L=58]
Description: hypothetical protein CKS_3518 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.28s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 436.07
//
Query:       EHU00920.1  [L=188]
Description: putative formate dehydrogenase oxidoreductase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0018   17.3   0.0     0.0025   16.9   0.0    1.2  1  Molybdopterin  Molybdopterin oxidoreductase


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-07    0.0025       1      74 [.     113     180 ..     113     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-07
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEE.EEBTSSCSHHHHHHHHHHHHHTT-EEE CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvag.fssgplmsmeslaslkkllsllggknl 74 
                    Rl++Pm+  +a   + ++++ W++A+ +i ++l+      +p  +++ f++++ +s+e+ ++ + +++ +g +n+
     EHU00920.1 113 RLTHPMKY-DAA-SDTYQPIAWETAFREIGERLRS---YSDP--NMVeFYTSGRVSNEAAFLWQLFAREYGTNNF 180
                    9*****99.666.9*********************...5555..445599999999********99999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1636.97
//
Query:       EHU00921.1  [L=587]
Description: putative formate dehydrogenase oxidoreductase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-19   67.6   0.0      2e-18   66.6   0.0    1.4  1  Molybdopterin    Molybdopterin oxidoreductase
      4e-11   42.9   0.1    9.6e-11   41.7   0.1    1.7  1  Molydop_binding  Molydopterin dinucleotide binding domain
  ------ inclusion threshold ------
      0.078   12.7   0.0        6.2    6.6   0.0    2.8  3  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   3.4e-22     2e-18     103     373 ..      13     303 ..       4     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.4e-22
                    SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-H..................CGGGCSEEEEEHTTTHHHHHHHHHHHH CS
  Molybdopterin 103 snpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryae..................llkfadewlaikpgtdaalalamghvi 180
                    + +l d+++ dl++ +G+N+ +++p +   ++++++k++a +++i p  +                   +++ a+ + +++ g daa++ +m++ +
     EHU00921.1  13 TVELDDFDHCDLVLCIGHNPGTNHPRM-LGTLREVSKRGATIVAINPLRERglerftspqspiemlsmgSTELASTYYKVRVGGDAAMLKGMMKFL 107
                    56788*********************9.88888999999********99999999999******999987778999************88888877 PP

                    HHCCCC..........TCHHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHC CS
  Molybdopterin 181 lqelkv..........dkeflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallv 266
                    l+              d++f+r +t g+e ++  l++t+  +  k ++   + ++ lar +a+++   +i +G+g++++q g++++++++nL+l+ 
     EHU00921.1 108 LAMDATareqgepgvlDEAFIREHTEGFEALKADLEATSWAHILKVSGMEREEIQHLARLYAEADR-TIICYGMGITQHQYGTQNVQQIANLLLMR 202
                    6532222233335555***********************998888888888888888888887777.***************************** PP

                    THCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTTHHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCH CS
  Molybdopterin 267 gnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslkeekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadeneveka 362
                    gn+g++g+g   l+G  +++g +    +    +s + l++ ++ f    p + g+     +ve++++++++  k+l  lg n   + +d + +  a
     EHU00921.1 203 GNMGKKGAGICPLRGHSNVQGDRTVGITE--IPSDSLLNSLEKVFGFTPPRQHGH----GAVEAIRAIRDGSAKALLCLGGNLAEAMSDPQVTFPA 292
                    ***************88888844444444..666666677888888888888888....999999******************************* PP

                    HHCSSEEEEEE CS
  Molybdopterin 363 lekldlvvvld 373
                     ++ldlvv + 
     EHU00921.1 293 MRNLDLVVHMA 303
                    *******9765 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   1.6e-14   9.6e-11       1     111 []     455     565 ..     455     565 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.6e-14
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEE..TTE.....EEEEEEEEESSB-TTEEEEESSHCC.... CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVeves..rrG.....svevrakvtervrpGvvfmpfgwweagek 86 
                      l+L+t rs+dq++++ +  ++++++ +++ +v+ inp+ A+++ ++ G++V v    + G     ++     v ++++ G+v++++++      
       EHU00921.1 455 LVLTTLRSHDQYNTTLYGLNDRYRGVTGRrDVLFINPDEAEKRQLRVGEQVNVIAldPDGnptsrRMDKLTIVVHDMAYGSVAAYYPE------ 542
                      79***************************************************863344544445555556888889*******9999...... PP

                      .S-GHCTS.--SCSTTT--CSTT-EE CS
  Molydop_binding  87 ggnaNalt.ddatdplsgtpefksva 111
                         aN+l+  d+ d  sg+p++ks++
       EHU00921.1 543 ---ANVLVpLDSHDTKSGIPAYKSTP 565
                      ...9*******************985 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.001       6.2      74     111 ..      18      58 ..       5      70 .. 0.79
   2 ?    2.7   0.0     0.016        94       1      35 [.     161     196 ..     161     206 .. 0.82
   3 ?   -2.6   0.0      0.72   4.3e+03      74      90 ..     292     308 ..     273     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.001
                   HHHH-SEEEEES-S..SSTCCCTTTTTTTTTT-.EEEEEES CS
  TPP_enzyme_M  74 aleeaDlvlalGar..fddirttgsepefapea.kiihidi 111
                    ++++Dlvl++G +   +  r  g+ +e+++++ +i+ i++
    EHU00921.1  18 DFDHCDLVLCIGHNpgTNHPRMLGTLREVSKRGaTIVAINP 58 
                   4689********88666666778888888888889999986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.016
                   HHHHHHHHHH-SSEEEEE-CHHCHTT.GHHHHHHHH CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsg.aseelrela 35 
                   i+++a l ++a r +i  G g+ +++  ++ +++ a
    EHU00921.1 161 IQHLARLYAEADRTIICYGMGITQHQyGTQNVQQIA 196
                   7899*****************998752556666655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.72
                   HHHH-SEEEEES-SSST CS
  TPP_enzyme_M  74 aleeaDlvlalGarfdd 90 
                   a+++ Dlv+   ++++ 
    EHU00921.1 292 AMRNLDLVVHMATKLNR 308
                   78999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4020.92
//
Query:       EHU00922.1  [L=172]
Description: hypothetical protein CKS_3521 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1275.29
//
Query:       EHU00923.1  [L=55]
Description: hypothetical protein CKS_3522 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-17   62.5   9.7    6.3e-09   35.8   3.8    2.1  2  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   3.8   3.5e-13   6.3e-09       1      21 []      10      30 ..      10      30 .. 0.97
   2 !   30.5   0.3   1.6e-11   2.9e-07       1      20 [.      32      51 ..      32      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.5e-13
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nFA +pE+a+E+GrKGG++S+
  EHU00923.1 10 NFAANPERASEAGRKGGKNSS 30
                9*******************6 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1.6e-11
         KGG  1 nFAnDpEkarEIGrKGGqaS 20
                nF n+pE+a E+GrKGG+ S
  EHU00923.1 32 NFRNNPERAVEAGRKGGKVS 51
                9****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       147  (0.00819901); expected 358.6 (0.02)
Passed bias filter:                       89  (0.00496402); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 446.34
//
Query:       EHU00924.1  [L=61]
Description: hypothetical protein CKS_3523 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 548.19
//
Query:       EHU00925.1  [L=40]
Description: hypothetical protein CKS_3524 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       168  (0.00937029); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 341.65
//
Query:       EHU00926.1  [L=45]
Description: hypothetical protein CKS_3525 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 398.93
//
Query:       EHU00927.1  [L=55]
Description: stress-induced protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   69.6  17.4    6.6e-10   38.9   4.4    2.1  2  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   5.1   1.6e-13   2.9e-09       1      21 []      10      30 ..      10      30 .. 0.98
   2 !   38.9   4.4   3.7e-14   6.6e-10       1      21 []      32      52 ..      32      52 .. 0.99

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.6e-13
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nFA+D+Eka+E+G+KGGq+S+
  EHU00927.1 10 NFAEDKEKASEAGKKGGQNSG 30
                9*******************8 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 3.7e-14
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nF+nD+Eka+E+G+KGGq+Sh
  EHU00927.1 32 NFKNDREKASEAGKKGGQNSH 52
                9*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                       82  (0.0045736); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 517.77
//
Query:       EHU00928.1  [L=342]
Description: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-36  125.6   0.0      6e-36  124.3   0.0    1.5  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
    0.00048   20.1   0.0    0.00085   19.3   0.0    1.3  1  CNP1         CNP1-like family
     0.0038   16.8   0.1      0.026   14.0   0.0    2.2  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai
     0.0042   16.3   0.0      0.013   14.7   0.0    1.6  1  URO-D        Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.3e-39     6e-36       1     318 [.       5     329 ..       5     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.3e-39
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  lpT+t GS P+ + + +  + +   +l+  e  +  +++ + ++++q ++g+D++++ge  R+  v  f e+l+g+ f+k ++v  ++      p ++
   EHU00928.1   5 LPTSTAGSLPKPSWLAQPETLWSPWKLQGSELAEGKKDALRLILDDQIQAGIDIVSDGEQTRQHFVTTFIEHLNGVDFEKREIVRIRNRYDASVPTVI 102
                  79***********9999999999999999999999***************************************************99999999**** PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGGH.HHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkadw.aayldw 195
                    vsr++++ +  ++     t++p+k  l Gp+t+++  +     +r++ a + a  l +e+k+Lea Gi +iQ+Depa+     ++++dw  a l+ 
   EHU00928.1 103 SAVSRQKPVFIDDAKFLRQQTKQPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKILNQEAKELEAIGIDIIQFDEPAFNVF-FDEVNDWgIAALER 199
                  *************************************99999999*********************************99754.55555652466777 PP

                  HHHHHHHHHTT.......S-TTSEEEEEES-..S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHH CS
  Meth_synt_2 196 aveafrldtia.......aaddtqvhtHlCy..selndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalik 284
                  +ve+ + +t++       ++++t+ +  l     +++++ +++++ ++D++++e  +s    +e + e   g++v +G +d+ ++ +++ ee+aa+++
   EHU00928.1 200 SVEGLKCETAVhicygygIKANTDWKKTLGTewRQYEEVFPKLQKSKIDIVSLECQNSR-VPIELI-ELIRGKKVMVGAIDVATNTIETPEEVAATLR 295
                  7776666554222222225666665555444115667778*************977776.344444.4456799************************ PP

                  CHHCTS-STSB-BB-SS-STTS-HHHHHHHHHHH CS
  Meth_synt_2 285 kaldvapkerlwvnPdCGLktrkreearaalknm 318
                  kal+ + +++l+ + +CG+  ++re ar +l+  
   EHU00928.1 296 KALQFVDADKLYPSTNCGMTPLSREVARGKLHAL 329
                  ****************************999876 PP

>> CNP1  CNP1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.9e-07   0.00085      66     112 ..     200     246 ..     194     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.9e-07
        CNP1  66 syeGirCataerklYatgrkdnkrWikaraaeWqrieeseanrlraa 112
                 s+eG++C+ta    Y++g k n+ W+k+  +eW++ ee  ++ ++++
  EHU00928.1 200 SVEGLKCETAVHICYGYGIKANTDWKKTLGTEWRQYEEVFPKLQKSK 246
                 79********************************9988655555444 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.27   1.2e+03      27      62 ..      30      65 ..      20      81 .. 0.76
   2 !   14.0   0.0   5.9e-06     0.026     137     208 ..     113     184 ..      94     279 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
                 SS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES--- CS
  Meth_synt_1 27 kiseeeLektakeLrakhwkkqkeagidlipvndfs 62
                 k++ +eL +  k+  +  ++ q +agid+++ ++ +
   EHU00928.1 30 KLQGSELAEGKKDALRLILDDQIQAGIDIVSDGEQT 65
                 567788888888888888999999999999987765 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.9e-06
                  HHHHHHH.HHTTGGEEEEEE-HHHHHH.T-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGS CS
  Meth_synt_1 137 leevkea.kalgieakpvllGpltflk.LskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvl 208
                  +++ k   +++    k  l Gp+t +  L + + +  ++++l  ++ ++ ++  +eL++ g++++q+dEPa+ +
   EHU00928.1 113 IDDAKFLrQQTKQPIKWALPGPMTMIDtLYDGHYK--SREKLAWEFAKILNQEAKELEAIGIDIIQFDEPAFNV 184
                  55555554566667888999****99625555554..58889999999999999****************9965 PP

>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.9e-06     0.013     250     330 ..     237     317 ..     231     323 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.9e-06
                 HHHHHHTTS--SEEE-...-TTS-HHHHHHSS....EEE--B-G.GGGG.S-HHHHHHHHHHHHT.T---SSSEEB-BSS---TT CS
       URO-D 250 eiledlaelgadvlsl...dwtvdlkeaarevgdkvalqGnldPialLl.gspeeiekevkeilekgaggkkgyilnlGhgippe 330
                 e++++l+++++d++sl   +++v++ e ++ +  k++++G +d  a+ + ++pee+ + ++++l+  ++ + +   ++ +g++p 
  EHU00928.1 237 EVFPKLQKSKIDIVSLecqNSRVPI-ELIELIRGKKVMVGAIDV-ATNTiETPEEVAATLRKALQF-VD-ADKLYPSTNCGMTPL 317
                 6788999*********555566688.888888899*********.67777***************5.55.789999******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.33
# Mc/sec: 3088.85
//
Query:       EHU00929.1  [L=327]
Description: hypothetical protein CKS_3529 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-184  610.6   4.6   5.8e-184  610.5   4.6    1.0  1  DUF1852   Domain of unknown function (DUF1852)
  ------ inclusion threshold ------
      0.038   12.7   0.2      0.054   12.2   0.2    1.1  1  HlyD_2    HlyD family secretion protein


Domain annotation for each model (and alignments):
>> DUF1852  Domain of unknown function (DUF1852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  610.5   4.6  6.4e-188  5.8e-184       1     323 []       1     323 [.       1     323 [. 1.00

  Alignments for each domain:
  == domain 1  score: 610.5 bits;  conditional E-value: 6.4e-188
     DUF1852   1 mkkdltfsiksirfdedykPsestrittnfanlarGekrqenlrnalkmidnrfnalaewdnpkgdrysveleiisveidieaeekeeafplieilktk 99 
                 mkk++tf+iks  fde+y+Pse+trittnfanlarG++rqenlrnal+midnrfn+la+wdnpk+dry veleiisve++ie+e++  afp+ieilkt+
  EHU00929.1   1 MKKEFTFTIKSSVFDENYNPSENTRITTNFANLARGTNRQENLRNALTMIDNRFNSLAHWDNPKADRYGVELEIISVELNIENETQRGAFPVIEILKTH 99 
                 899************************************************************************************************ PP

     DUF1852 100 ivdkktgkriegivGnnfssyvrdydfsvlllehnkdkaefsvPedfGdlhGklfkslvnseaykekfkkaPviclsvsssktykrtenehPvlGveyk 198
                 ivdkkt++riegivGnnfssyvrdydfsvll ehnk+++ fs+P +fGdlhG++fk++vns+a+ke+fkk+Pviclsvss+++y+rt+n+hPvlG+ey+
  EHU00929.1 100 IVDKKTQQRIEGIVGNNFSSYVRDYDFSVLLSEHNKNNTGFSAPANFGDLHGNIFKCFVNSAAFKENFKKQPVICLSVSSKNVYTRTGNRHPVLGIEYQ 198
                 *************************************************************************************************** PP

     DUF1852 199 qdelsltdeyfakmGlkvryfmPknsvaPlafyfsgdllsdytnlelististmetfqkiyrPeiynansaagkvykpslkhqdysltkivydreersq 297
                 qd++sltd+yf+kmGl+ ryfmP+nsvaPlafyfsgdllsdytnlelististmetfqkiyrPeiynans+ag++y+psl+h dyslt+ivydreers 
  EHU00929.1 199 QDAYSLTDQYFHKMGLTARYFMPENSVAPLAFYFSGDLLSDYTNLELISTISTMETFQKIYRPEIYNANSPAGQCYQPSLNHLDYSLTRIVYDREERSL 297
                 *************************************************************************************************** PP

     DUF1852 298 laveqgkfaeehfikpykeileqwsa 323
                 laveqgkf+ee+fikpyk++le+wsa
  EHU00929.1 298 LAVEQGKFTEEKFIKPYKAVLEEWSA 323
                 ************************97 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2     6e-06     0.054      96     171 ..      36     108 ..      12     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6e-06
      HlyD_2  96 kseadeklkekletlnerikeienneaieniekdiekldreInvlekdikesiknedikkieelKeelnalldkKk 171
                  ++++e+l++ l+ +++r +++ + +   n + d   ++ eI   e +i+++ + +++ +ie lK  +  +  + +
  EHU00929.1  36 GTNRQENLRNALTMIDNRFNSLAHWD---NPKADRYGVELEIISVELNIENETQRGAFPVIEILKTHIVDKKTQQR 108
                 47899*****************9999...889**********************************9988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2770.52
//
Query:       EHU00930.1  [L=300]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-35  121.5   3.9    4.3e-35  121.1   3.9    1.2  1  Cupin_6       Cupin
    1.4e-18   66.9   0.1    3.4e-18   65.7   0.0    1.7  2  HTH_18        Helix-turn-helix domain
      1e-17   63.7   0.0    3.5e-10   39.7   0.0    2.5  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    6.7e-05   22.5   0.0    0.00016   21.3   0.0    1.6  1  Cupin_2       Cupin domain
     0.0039   17.0   0.1     0.0085   15.9   0.1    1.5  1  TetR_N        Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.053   13.4   0.0    1.7  1  AraC_binding  AraC-like ligand binding domain
      0.069   13.0   0.1       0.79    9.6   0.0    2.3  2  HTH_IclR      IclR helix-turn-helix domain
      0.089   12.2   0.0       0.24   10.8   0.0    1.8  1  DUF2917       Protein of unknown function (DUF2917)


Domain annotation for each model (and alignments):
>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   3.9   1.9e-38   4.3e-35       1     182 [.       2     181 ..       2     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 1.9e-38
     Cupin_6   1 DvLsdlLagvrlrgalffrsaltapwslrfpag..lalhvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplaviealgeasglgeg 97 
                 D+Ls+lLa +++++ +++ + lt+  s+++pa   +++++v+ G+cwl++++ +ep+rL+ag + llp g+p++la +p++++++  ++ +e+    ++
  EHU00930.1   2 DPLSQLLALLEPQRYVSGGVILTPEMSVQWPAHdgVKCYAVVAGACWLTVDGVAEPLRLNAGKCYLLPPGAPFRLATNPDAQTVDFQTVRSEMVAV-TA 99 
                 9*****************************86667**************99989**************************7666444444333333.22 PP

     Cupin_6  98 etgnngagegttvllcGayqfdgsvsdpllaaLPrvlvvaaeeaapelrallellaaElardrpGsqavldrLldlLlvqaLRaw 182
                  +++++   +++ l+ G++ + g  +++ll +LP+v++++++++ + ++++le + +E+++ +pGs +++++L+ +Ll+qaLR +
  EHU00930.1 100 AKLDET---SACLLVGGHFLLTGRPAQMLLGTLPPVVHIRRSADRAAMQWALERMSQEVREAQPGSVLIVQQLAFMLLIQALRLY 181
                 222222...569***************************66677899************************************76 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.9   8.7e+03      26      36 ..     145     155 ..     135     173 .. 0.52
   2 !   65.7   0.0   1.5e-21   3.4e-18       1      80 [.     219     297 ..     219     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.9
                 HHHHHHHHHHH CS
      HTH_18  26 eylrrlRlerA 36 
                 +++ ++  +++
  EHU00930.1 145 QWALERMSQEV 155
                 33333333333 PP

  == domain 2  score: 65.7 bits;  conditional E-value: 1.5e-21
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 laa++g+sr  + ++fk+ +g+ p++yl++ R++ A+++L  + +  +++iA+ lG+++ s+F++af+++ g++P+++ +
  EHU00930.1 219 LAARVGMSRAVFAERFKQTVGIAPVDYLTQWRMHLACDQLK-KGNGGLTAIAAGLGYESESAFAKAFKRVIGVSPGKFSK 297
                 89**************************************5.699*******************************9965 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.6e-13   3.5e-10       1      42 []     206     247 ..     206     247 .. 0.97
   2 !   21.6   0.0   7.7e-08   0.00017      12      38 ..     266     293 ..     265     295 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.6e-13
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +++++ +++t++++A+ +g+Sr  F  +Fk+++G+ P  y+t
  EHU00930.1 206 MHQHPEHKWTLAELAARVGMSRAVFAERFKQTVGIAPVDYLT 247
                 89*************************************986 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 7.7e-08
                 HHHHHHTTS.SHHHHHHHHHHHSSS-HH CS
    HTH_AraC  12 ediAdelgf.SrsyFsrlFkketGmtPs 38 
                 + iA+ lg+ S+s F ++Fk++ G++P 
  EHU00930.1 266 TAIAAGLGYeSESAFAKAFKRVIGVSPG 293
                 679999*********************6 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.2e-08   0.00016       6      61 ..      24      81 ..      20      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 7.2e-08
                ETTEEEEEECSSSEEEEEEEEESEEEEEECTE..EEEEETTEEEEE-TT-EEEE.EE-S CS
     Cupin_2  6 ppGesapshrHpgedeffyVleGegeltvdge..eveleaGdsvyfpagtpHrf.rNtg 61
                 p  s ++  H+g   ++ V+ G   ltvdg   + +l+aG +++ p+g p r+  N+ 
  EHU00930.1 24 TPEMSVQWPAHDGV-KCYAVVAGACWLTVDGVaePLRLNAGKCYLLPPGAPFRLaTNPD 81
                5544889999****.***************7777*******************944444 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   3.8e-06    0.0085       3      38 ..     200     235 ..     199     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.8e-06
                 HHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTS CS
      TetR_N   3 daArelfaerGydattvreIAkrAGvskgalYryFp 38 
                  aA++++ ++  ++ t++e+A+r+G+s++ +  +F+
  EHU00930.1 200 GAALACMHQHPEHKWTLAELAARVGMSRAVFAERFK 235
                 69***************************9988886 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.053      21      73 ..      34      89 ..      25     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
                  T-SEEEEEEEEE-EEEEETTEE..EEE-TT-EEEE-TTS-EEEEE-TTS.EEEEEE CS
  AraC_binding 21 hdeyvihyvteGtgrlrlngrt..ydlgpGdlfLlppgepHdyesdsed.gweyrw 73
                  hd      v++G+++l+++g     +l++G   Llppg p +++  +++    +++
    EHU00930.1 34 HDGVKCYAVVAGACWLTVDGVAepLRLNAGKCYLLPPGAPFRLATNPDAqTVDFQT 89
                  677777789***********7777*****************999888765555555 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00035      0.79       9      33 ..     203     228 ..     198     229 .. 0.81
   2 ?    0.4   0.0      0.26   5.9e+02      11      29 ..     257     273 ..     256     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00035
                 HCT-CTTBSS.-BHHHHHHHHTS-HH CS
    HTH_IclR   9 Ldalaeapqe.ltlselArrtglpkS 33 
                 L +  ++p+  +tl+elA+r g++++
  EHU00930.1 203 LACMHQHPEHkWTLAELAARVGMSRA 228
                 556666666668************96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.26
                 T-CTTBSS-BHHHHHHHHT CS
    HTH_IclR  11 alaeapqeltlselArrtg 29 
                 +l +++++  l+ +A+ +g
  EHU00930.1 257 QLKKGNGG--LTAIAAGLG 273
                 66666665..9*****998 PP

>> DUF2917  Protein of unknown function (DUF2917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.24      13      51 ..      33      72 ..      22      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
     DUF2917 13 aragqeLr.vreGrvWvTregdpeDhwLqaGqslrlargq 51
                a+ g +   v +G+ W+T++g +e   L+aG+ + l++g 
  EHU00930.1 33 AHDGVKCYaVVAGACWLTVDGVAEPLRLNAGKCYLLPPGA 72
                44444443599*********************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2577.10
//
Query:       EHU00931.1  [L=294]
Description: NAD-dependent epimerase/dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-13   50.2   0.2    1.1e-12   47.9   0.2    1.9  1  Epimerase       NAD dependent epimerase/dehydratase family
    4.9e-13   49.4   0.2    1.2e-12   48.1   0.1    1.6  2  NAD_binding_10  NAD(P)H-binding
    3.1e-08   33.5   0.1    5.1e-08   32.8   0.1    1.4  1  NmrA            NmrA-like family
      6e-07   28.8   0.0    1.1e-06   28.0   0.0    1.4  1  RmlD_sub_bind   RmlD substrate binding domain
    2.4e-06   26.8   0.0    3.4e-06   26.3   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    1.6e-05   24.5   0.1    3.8e-05   23.3   0.1    1.6  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    0.00055   20.2   0.0     0.0013   19.0   0.0    1.6  1  TrkA_N          TrkA-N domain
      0.006   15.8   0.0      0.015   14.4   0.0    1.8  2  NAD_binding_4   Male sterility protein
  ------ inclusion threshold ------
      0.012   15.6   0.1      0.022   14.7   0.1    1.5  1  KR              KR domain
      0.013   15.2   0.0      0.024   14.3   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
      0.013   15.0   0.0      0.025   14.0   0.0    1.5  1  adh_short       short chain dehydrogenase
      0.017   15.7   0.0       0.04   14.5   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.028   14.6   0.0      0.049   13.8   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2   8.3e-16   1.1e-12       2     232 ..       4     214 ..       3     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 8.3e-16
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlle 100
                 ++tGatGfiGsa++  l ++g+ev+gl+r +++  + +++ +e   +d+ d+++l+r  +   ++ vih A   + ++  ++ ++  ++ +++++ l+ 
  EHU00931.1   4 FLTGATGFIGSAIAADLIAAGHEVVGLTRHQQGVDRLSKAGVEPFWGDINDHDSLQRGAA--SCEGVIHTAFNHDFSTFLTNCEADRQAIAAMATALAG 100
                 68*******************************************************999..9*******66555555555555544444444444444 PP

                 HHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTSSS CS
   Epimerase 101 aarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqe 199
                  ar      l+  s + +   ++  p  e+    pl+pn       +a+e  + a+  + g n+ ++rl+ +  p       +++++ li+ + +    
  EHU00931.1 101 SAR-----PLIITSAVGLDSTGQGRPAVEDY-FNPLHPN---P--RRASELAAMAA-LEKGGNVSVVRLSQVHNPL-----KQGLVTSLIEVARQTG-V 181
                 444.....45555554444444555655555.3455444...3..45555555554.55556*************9.....8999999999999988.8 PP

                 EEEETTST-EEEEEEHHHHHHHHHHHHHHHTT- CS
   Epimerase 200 vtllgdgtalRdflyveDvaeaillvlehvdag 232
                   ++++g++++  ++ +D++ ++ l+le+ + g
  EHU00931.1 182 SAFIDEGQNRWSAVHLDDAVCLYRLALEKNRPG 214
                 9999************************95544 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.1   8.8e-16   1.2e-12       1     127 [.       7     137 ..       7     171 .. 0.77
   2 ?   -1.3   0.0       1.3   1.7e+03      74      94 ..     165     185 ..     140     185 .. 0.61

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 8.8e-16
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC........HHHHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk........deegaknivdaake 87 
                     GAtG +G+++++ l+a+ ghev+ l+R+++ +++l+ ++g+e + gd++d+++l++  + ++ V+ ++ +++          +++a+++++ a +
      EHU00931.1   7 GATGFIGSAIAADLIAA-GHEVVGLTRHQQGVDRLS-KAGVEPFWGDINDHDSLQRGAASCEGVIHTAFNHDFstfltnceADRQAIAAMATALA 99 
                     9****************.5***************97.7******************************776665676655544557777777777 PP

                     CT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHH CS
  NAD_binding_10  88 agvkRfvlvsaigvgdevpgefgewnkellkaylaakraa 127
                        + +++ sa+g +    g+  + +++ +++ +   r+a
      EHU00931.1 100 GSARPLIITSAVGLDST--GQGRPAVEDYFNPLHPNPRRA 137
                     78889999999999964..443444455555555444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
                     HHHH.HHHHHHHHHHCT--EEE CS
  NAD_binding_10  74 deeg.aknivdaakeagvkRfv 94 
                     ++ g + +++++a+++gv+ f+
      EHU00931.1 165 KQ-GlVTSLIEVARQTGVSAFI 185
                     22.2478889999999998776 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   3.7e-11   5.1e-08       3      76 ..       5      83 ..       3     126 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.7e-11
                ESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.......S CS
        NmrA  3 viGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.......s 76
                 +GaTG +G+++++ l++agh+v  l+R ++   ++ l++aGve   gd++d++sl++     ++v+ +           +
  EHU00931.1  5 LTGATGFIGSAIAADLIAAGHEVVGLTRHQQ--GVDRLSKAGVEPFWGDINDHDSLQRGAASCEGVIHTAFNHdfstfltN 83
                58**************************865..689**********************99999999976443345555533 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   7.7e-10   1.1e-06       1     226 [.       1     233 [.       1     252 [. 0.77

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 7.7e-10
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    m++ +tGa+G +Gs++a+ l ++g+ev++ltr+                 d++d +++++  ++  ++ v+++A+ ++     ++ e    ++ +a
     EHU00931.1   1 MRLFLTGATGFIGSAIAADLIAAGHEVVGLTRHqqgvdrlskagvepfWGDINDHDSLQRGAAS--CEGVIHTAFNHDFSTFLTNCE----ADRQA 90 
                    89******************************99999999999998888899999999987666..888********9977666555....45566 PP

                    HHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----S..SHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHHHH-S.EEE CS
  RmlD_sub_bind  82 vealAeaaaavgalLihvStDyVFdGekkrpYeeddetsPl..nvYGrtKlaGEqavlaagkkalivRtswvygekgknfvktmlrlakere.elk 174
                     +a+A a a    +Li  S     d + +   + +d  +Pl  n + ++ la   a l++g ++ +vR s v    ++ +v+ +++ a++   +  
     EHU00931.1  91 IAAMATALAGSARPLIITSAV-GLDSTGQGRPAVEDYFNPLhpNPRRASELAA-MAALEKGGNVSVVRLSQVHNPLKQGLVTSLIEVARQTGvSAF 184
                    677777777777899988874.4688888888899999998223344444444.55566899*************************966551455 PP

                    EESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHH CS
  RmlD_sub_bind 175 vvaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefAra 226
                    + + q +      d A +l  l+ ++ +     + yH+++e+ ++   +A+a
     EHU00931.1 185 IDEGQNRWSAVHLDDAVCLYRLALEKNR---PGSRYHAVAEEGITLRVLADA 233
                    5555555555555666666666666665...688999999999888777776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.5e-09   3.4e-06       2      82 ..       5      80 ..       4     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.5e-09
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagk 82
                +tG++GF+G+a+   L+ +++     v+ l  +++  ++lsk +v+    gD++d+d+l++   + + vih+a   d    
  EHU00931.1  5 LTGATGFIGSAIAADLIAAGH----EVVGLTRHQQGVDRLSKAGVE-PFWGDINDHDSLQRGAASCEGVIHTAFNHDFSTF 80
                69******************7....678888888999*********.9************************987776654 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.7e-08   3.8e-05       2      73 ..       5      64 ..       4      75 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.7e-08
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHH CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllae 73
                    TG +GfiGs +a  L++ g+ev+g++r+++   ++r+++            ++ + gD++D++sl+r  a+
     EHU00931.1  5 LTGATGFIGSAIAADLIAAGHEVVGLTRHQQG--VDRLSKAG----------VEPFWGDINDHDSLQRGAAS 64
                   6*************************998876..34554433..........34467888888888876555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.2e-07    0.0013       7      80 ..      10      82 ..       7     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.2e-07
                SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHH CS
      TrkA_N  7 GrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilav 80
                G +G+++a  L + g+ +vv+  + ++ v++l++ g+e + gd  d + L++ g++++++vi ++ +++++++++
  EHU00931.1 10 GFIGSAIAADLIAaGH-EVVGLTRHQQGVDRLSKAGVEPFWGDINDHDSLQR-GAASCEGVIHTAFNHDFSTFLT 82
                669**********666.6********************************98.8999999999988887777765 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.1e-05     0.015       1      37 [.       5      39 ..       5      79 .. 0.88
   2 ?   -2.1   0.0       1.3   1.8e+03     186     213 ..     141     167 ..     136     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesa 37
                   lTGaTGF+G+ + ++L+      +++ l R ++g + 
     EHU00931.1  5 LTGATGFIGSAIAADLIAAGH--EVVGLTRHQQGVDR 39
                   8****************9988..79999998877554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                    HHHHHHHHH---EEEEEE-EEE--SSST CS
  NAD_binding_4 186 lvrearrrsglpvvivRpsiitgesktG 213
                       +a  ++g +v++vR+s +    k+G
     EHU00931.1 141 AAMAAL-EKGGNVSVVRLSQVHNPLKQG 167
                    444455.458889999999997754445 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.6e-05     0.022       4     103 ..       4      86 ..       2     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG++G +G ++a  l++ g + +v l+R+       ++ +++l++    ve +  D+ d+d++++  ++++       Gvih+A   + +++ +  +
  EHU00931.1   4 FLTGATGFIGSAIAADLIAAGHE-VVGLTRH-------QQGVDRLSKA--GVEPFWGDINDHDSLQRGAASCE-------GVIHTAFNHDFSTFLTNCE 85 
                 58******************986.5566677.......4678889885..578999***********999997.......******9999776654433 PP

                 H CS
          KR 103 e 103
                 +
  EHU00931.1  86 A 86 
                 3 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.024       7      42 ..      10      46 ..       7      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEE CS
        ApbA  7 GaiGsllaakLakagadvtlilrsr.rlealkknGlr 42
                G iGs +aa L +ag++v+ ++r +  +++l+k+G++
  EHU00931.1 10 GFIGSAIAADLIAAGHEVVGLTRHQqGVDRLSKAGVE 46
                88***********************99******9975 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.025       4      67 ..       4      61 ..       2      70 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHH CS
   adh_short  4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreeveal 67
                + tGa++ IG aia  l+++G +vv + r+++ + ++ k  +     + ++ +D++d++++++ 
  EHU00931.1  4 FLTGATGFIGSAIAADLIAAGHEVVGLTRHQQGVDRLSKA-G-----VEPFWGDINDHDSLQRG 61
                57***************************98877444333.2.....67788888888877765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.9e-05      0.04       6      45 ..       8      43 ..       4      91 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaee 45
                   ++G +g+a+a  l+aag   he+v + +r+++ ++ l ++
     EHU00931.1  8 ATGFIGSAIAADLIAAG---HEVV-GLTRHQQGVDRLSKA 43
                   58***************...****.99****999988765 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.6e-05     0.049       8      56 ..      10      65 ..       6     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                   SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.......EEE-SSHHHHHHHC CS
  NAD_binding_2  8 GvMGsnmalnllkagykvavynrtkekveelvaeg.......akaaesieelvasl 56
                   G +Gs +a  l++ag++v++  r+++ v++l ++g       ++ ++s++  +as+
     EHU00931.1 10 GFIGSAIAADLIAAGHEVVGLTRHQQGVDRLSKAGvepfwgdINDHDSLQRGAASC 65
                   889*******************************9666666644444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2458.04
//
Query:       EHU00932.1  [L=275]
Description: beta-lactamase domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-23   84.2   2.8    1.4e-23   83.9   2.8    1.2  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0002   21.0   1.9     0.0003   20.3   1.6    1.5  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.024   14.5   0.1      0.044   13.7   0.1    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   2.8   2.3e-27   1.4e-23       5     159 ..      46     217 ..      42     263 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 2.3e-27
                  SSEEEEEEETTCEEEES--SCHHHHHHHH............HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHH CS
  Lactamase_B   5 pvnsyliegdggviLiDtGtsteaaraal............elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeadda 90 
                  +v s+++++++ +i+iDtG+++ ++ra +            +l+++g++p+ vd v++THlH DH+G++ ++++  + p +++a ++++  +  +++ 
   EHU00932.1  46 SVHSWVVRTPDNLIVIDTGSGNGRERAGSplshqlntpyaqRLRDAGVDPDAVDIVLITHLHGDHVGWNTHWMDGKWTPFFKHARYYCSDSGLKGWQH 143
                  789********************************************************************************************888 PP

                  HHHCCHH.....TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCC CS
  Lactamase_B  91 asrkgll.....lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgr 159
                   ++ + l      +   a   ++++  ++   ++++++++t+g+ h h ++++++ g+  lf+GD+ ++  +++
   EHU00932.1 144 DPARKTLledsiNPVIAAGLLETFDVTQEPVFADVLRYVPTPGHSHDHASIILHSAGDYALFSGDLMHNDLQVS 217
                  8888888****9999999999999999999************************************99876665 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   1.6   5.1e-08    0.0003       3      52 ..      59     118 ..      57     225 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.1e-08
                    EEES--TT.........HHHH.HTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCC CS
  Lactamase_B_2   3 iLiDagpd.........lrqq.alralqPve.lrdelppidaVllthaHyDHlaglltlre 52 
                    i+iD+g +         l  q  +++ q+ + +  +++++d Vl+th H DH+ g  t   
     EHU00932.1  59 IVIDTGSGngreragspLSHQlNTPYAQRLRdAGVDPDAVDIVLITHLHGDHV-GWNTHWM 118
                    889999999999999987677678888999999999*****************.6655444 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   7.4e-06     0.044       8      54 ..      48     115 ..      44     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.4e-06
  Lactamase_B_3   8 nsflletagarilvDPf.........kanlgyeppa....................eeaDlvlisqaledHahlet 54 
                     s++++t++  i++D +         +        +                    + +D+vli++ + dH   +t
     EHU00932.1  48 HSWVVRTPDNLIVIDTGsgngreragS--------PlshqlntpyaqrlrdagvdpDAVDIVLITHLHGDHVGWNT 115
                    589999999999999985555544440........144455555556667777777***************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2125.18
//
Query:       EHU00933.1  [L=138]
Description: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-13   48.2   0.1      1e-12   47.8   0.1    1.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    0.00029   20.6   0.0    0.00038   20.2   0.0    1.3  1  MafB19-deam      MafB19-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   1.1e-16     1e-12      10     100 ..       3      93 ..       1      94 [. 0.85

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.1e-16
                      HHHHHHHHHH..TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHH......HHHHHHHHT-S CS
  dCMP_cyt_deam_1  10 lalkaakeaq..kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsm......Cakaiiqsgik 95 
                      lal+ +++a     +n++VG+viv+ng+++stg+ ++p       HAE  A+ + +    + +e + +yvt ePC        Ca  ++ ++++
       EHU00933.1   3 LALAQSRHALphCRPNPPVGCVIVHNGRVVSTGFTRSP----GQYHAEADALSTLT----LPVEACEIYVTPEPCAFqgrtpsCALTLARLRPR 88 
                      5666666666656789*********************9....446********998....46778**********97799999********999 PP

                      EEEEE CS
  dCMP_cyt_deam_1  96 kvvvg 100
                       ++++
       EHU00933.1  89 HIYIA 93 
                      99875 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.2e-08   0.00038      23      84 ..      19      71 ..       3     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.2e-08
  MafB19-deam 23 dkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdm 84
                  ++g+viv++++v+ +g ++ +       HaE++al        +   + + +yvt epC  
   EHU00933.1 19 PPVGCVIVHNGRVVSTGFTRSP----GQYHAEADALSTL-----TLPVEACEIYVTPEPCAF 71
                 589****************777....789*******765.....666799**********64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1035.48
//
Query:       EHU00934.1  [L=331]
Description: membrane-fusion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0084   16.6   0.6     0.0084   16.6   0.6    2.3  2  GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
  ------ inclusion threshold ------
      0.015   14.9   2.7      0.034   13.8   2.6    1.6  1  Miff           Mitochondrial and peroxisomal fission factor M


Domain annotation for each model (and alignments):
>> GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   9.4e-07    0.0084      23      75 ..     125     181 ..     103     196 .. 0.79
   2 ?   -1.5   0.2      0.39   3.5e+03      40      40 ..     222     222 ..     186     259 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.4e-07
  GTA_holin_3TM  23 aaklekellqlqqag..efaea..dreleqleaqleimkaEaasddgfnrrwRPllg 75 
                    + +++ ++l+lqq +   f++a  + +l+ql +q++i  a    + +++  wRPll 
     EHU00934.1 125 QDMAHTQQLALQQVSdnHFQAAmlNGQLAQLDQQIKIESAQVGMAQNLVNKWRPLLN 181
                    444555777888874457888899******************************985 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.39
  GTA_holin_3TM  40 a 40 
                    +
     EHU00934.1 222 E 222
                    1 PP

>> Miff  Mitochondrial and peroxisomal fission factor Mff
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.6   3.8e-06     0.034     139     258 ..     127     250 ..      97     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-06
        Miff 139 vrqngqlvrndsivtpsaeqvrvcppllsped.....ganlysargilsliqsttrrayqqvlevldenr.lrggsaskssslskhdslreelstldss 231
                 +++ +ql  ++ ++ ++ +++ +   l++ ++     +a++  a+++++  +    + y   l+  +e+  + g +++ ++ l+++ ++r+++s l+ +
  EHU00934.1 127 MAHTQQLALQQ-VSDNHFQAAMLNGQLAQLDQqikieSAQVGMAQNLVNKWRPLLNKGYISALQFAQEQSvVWGYESQYRALLQQQYATRQQISVLEDQ 224
                 34444444444.223333333333333333332333377888999999999999999999999999999966677788888888888**********99 PP

        Miff 232 leltpddvtvvdaasLrrqiiklnrRL 258
                 +   p   t v +  Lrrq++++n+ L
  EHU00934.1 225 ERQIPLA-TAVKLNVLRRQLAQVNENL 250
                 9999998.9***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2267.02
//
Query:       EHU00935.1  [L=496]
Description: L-arabinose isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.9e-171  567.9   0.0   1.1e-170  567.7   0.0    1.1  1  Arabinose_Isome  L-arabinose isomerase
    3.3e-45  152.6   0.0    6.2e-45  151.7   0.0    1.5  1  Arabinose_Iso_C  L-arabinose isomerase C-terminal domain


Domain annotation for each model (and alignments):
>> Arabinose_Isome  L-arabinose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.7   0.0  1.2e-174  1.1e-170       2     356 .]       2     355 ..       1     355 [. 0.99

  Alignments for each domain:
  == domain 1  score: 567.7 bits;  conditional E-value: 1.2e-174
                      GG-EEEEEEB--STS-HHHHHHHHHHHHHHHHHHHHHS--SSEEEE---B-SHHHHHHHHHHHHH-TTEEEEEEEESS---THHHHHHHHH--S CS
  Arabinose_Isome   2 kklevwfvtgsQeLYgeetlkqvaeeakeiveelnesaklpvkvvlkpvvktseeieklvkeanadeeciGvitwmhtfsPakmwikglkalkk 95 
                      ++ +vwfv+g+Q+LYg etl+qv+++a+++v++ln++  lpv+++lkp+vk+++e  +l+++a++d++ciG+itw+htfsPakmwi gl+ l+k
       EHU00935.1   2 QQFNVWFVIGTQHLYGAETLRQVEHNARQVVDGLNQE-GLPVRLTLKPLVKSPDEALSLCRDASHDQNCIGIITWLHTFSPAKMWIGGLNVLTK 94 
                      6889******************************966.69****************************************************** PP

                      -EEEEE--SSSS--TTT--HHHHHSS-HHHHHHHHHHHHHHTT--EEEEES-TT-HHHHHHHHHHHHHHHHHHHHTT-EEEEES---TT-STT- CS
  Arabinose_Isome  96 PllhlhtQfneeipwdeidmdfmnlnQsaHGdrefgfivarlrlkrkvvvghwkdeevqekiaawaraaaavaeskklkvarfgdnmrevavte 189
                      Pll++htQfn+eipwd++dmdfmnlnQ+aHG refgfi ar++l+++vv+ghw d++ q+++a+w+raa+a ++s++lkvarfgdnmrevavte
       EHU00935.1  95 PLLQFHTQFNAEIPWDSMDMDFMNLNQTAHGGREFGFIGARMGLQHSVVTGHWPDKHSQQRVANWMRAALAKQASQHLKVARFGDNMREVAVTE 188
                      ********************************************************************************************** PP

                      --HHHHHHHH--EEEEE-HHHHHHHHHTS-HHHHHHHHHHHHHHSEE-GGGSTTSTTHHHHHHHHHHHHHHHHHHHHHT-SEEEE-TT--TTSS CS
  Arabinose_Isome 190 GdkveaeiklGvsvntygvgdlvevveavsdeevdalveeyekkYelaeelkeeeereeslreaarielglrkfLeekgfkaftttFedlgglk 283
                      Gdkv+a+i++G++vn++gvgdlvev+++vs+ +v+alv+eye++Y++++ + +++e+++++ +aarielgl++fL+++g+kaftt+F++l+g++
       EHU00935.1 189 GDKVAAQIQFGYAVNGWGVGDLVEVINSVSEGDVNALVDEYESQYRFSDVAAAGGEKRQNVLDAARIELGLKRFLDDEGCKAFTTNFQTLHGMT 282
                      ********************************************************************************************** PP

                      S-SSHHHHHHHHHT-EEESTT-HHHHHHHHHHHHHTTTSSS-EEEEEEEEEE--TT--EEEEE-SS---GGGB CS
  Arabinose_Isome 284 qlpglavqrLmaeGyGfgaEGDwktaalvrilkvmaegleggtsfmEdYtydlepgkelvLgaHmlEvcpsia 356
                      qlpglavqrLm +GyGf++EGDwktaal+ri+kv+a + +ggtsfmEdYty+++pg++lvLg+HmlEvcpsia
       EHU00935.1 283 QLPGLAVQRLMGQGYGFAGEGDWKTAALLRIFKVLAGDRPGGTSFMEDYTYHFSPGNDLVLGSHMLEVCPSIA 355
                      ************************************************************************8 PP

>> Arabinose_Iso_C  L-arabinose isomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   6.9e-49   6.2e-45       1     114 []     359     472 ..     359     472 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 6.9e-49
                      --EEEE---TTTS-S--EEEE-BB--EEEEEEEEEE-SSSEEEEEEEEEEE--SS--TT--S-EEEEEESS-HHHHHHHHHHTT--SEEEEESS CS
  Arabinose_Iso_C   1 kprlevhplgiGgkedparlvFeakagkavvvslvdlgdrfrlivnevevvkpeeelpkLpvaralwkpkpdlktaaeaWilaGgaHHtvlsla 94 
                      kp ++v+ lgiG+k+dparl+F++ ag+a+++s++d+gdrfrl+vn v++++++++lpkLpvaralwk++p+l+ta eaWilaGgaHHtv+s+a
       EHU00935.1 359 KPLIDVQFLGIGNKADPARLIFSTPAGRAINASVIDMGDRFRLLVNVVDAIEQPKPLPKLPVARALWKAQPSLATASEAWILAGGAHHTVFSQA 452
                      799******************************************************************************************* PP

                      --HHHHHHHHHHHT-EEEEE CS
  Arabinose_Iso_C  95 ltaeqledfaelagielvvi 114
                      lt +++  + e+ gie++vi
       EHU00935.1 453 LTLDDMYLYGEMHGIEVLVI 472
                      *****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3739.61
//
Query:       EHU00936.1  [L=561]
Description: L-ribulokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-37  128.7   0.2    3.2e-37  128.2   0.2    1.2  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    1.2e-11   44.6   0.0    5.7e-11   42.5   0.0    2.0  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
     0.0016   16.7   0.0     0.0021   16.3   0.0    1.1  1  HSP70     Hsp70 protein


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.2   5.4e-41   3.2e-37       3     198 .]     294     504 ..     292     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 5.4e-41
      FGGY_C   3 vslGTssflll.vgtkpv..isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdagev.............eeslaelaaaeavad 85 
                  ++GTs++ +l + t +v  ++++g++++v g+  +++ +le+++++ g++ aw+ + lg   +++ + +                             
  EHU00936.1 294 KVIGTSTCDILiTDTGKVgdRAIKGICGQVDGSVVPGTIGLEAGQSAFGDIYAWYSRLLGWPLQLAAQHHPelkpqlaemqtslI-------------- 378
                 589********6666666*****************************************55555544444444455555542222.............. PP

      FGGY_C  86 a.............ggvvfvpafsglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgs.kndllmqllA 170
                 +               +v++++f+g r+p+++++++g+it+l+ +t++++++  ++ a+a+++rai+e++e++  +p++++++ GG + k++++mq ++
  EHU00936.1 379 TrlteawvaspqldHLPVVLDWFNGRRTPNANQRLKGVITDLNLGTDAPALFGGLIAATAFGARAIMECFEQQ-AIPVENILTLGGIArKSPAIMQACC 476
                 2233444445567689******************************************************999.************************* PP

      FGGY_C 171 dilgvpVerpktaeatalGaAilAavaa 198
                 d++++p+++++++e++alGaAi Aavaa
  EHU00936.1 477 DVMNRPLDIVASDECCALGAAIFAAVAA 504
                 **************************95 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   9.5e-15   5.7e-11       2     245 .]       7     284 ..       6     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 9.5e-15
                 EEEEEEESSEEEEEEEE.TTS-EEEEEEEE--E......B-SSTT--EE-HHHHHHHHHHHHHHHHHHC.T.-GCCEEEEEEEE-SS-EEEEETTTEES CS
      FGGY_N   2 ilglDcGttstkaivld.ekgkvvasaqaelel......sspkegwaeqdpeeiwqalaeairkvleqa.gisekqikaIgisgqreglvllDkndkpL 92 
                  lglD G  s++a+++d ++g+ ++sa a+++       s p+ ++  + p+  ++a+ +a+  vl+++ + +   +++Ig+ + + + + +D+++k+L
  EHU00936.1   7 TLGLDFGSDSVRALAVDcHTGQELHSAVANYARwqqglySDPHSNRFRHHPQDYIDAMEQAMLGVLAALsDTQRAAVVGIGVDSTGSTPAPIDRDGKVL 105
                 69*************************99997522222245677999********************998899999********************998 PP

                 S.........E..EE-TT--TTHHHHHHHHHTTCHCCHHHHH...SS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEH..... CS
      FGGY_N  93 y.........n..ailwkdrrtaeiveklkeegnekklyekt...glvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdv..... 172
                           n   +lwkd+ ++e++e+++++ +  ++   +   g + s+     k+  + ++   v+ ++  ++   d++   L++  + d      
  EHU00936.1 106 AlrpefaenpNamFVLWKDHTAIEEAEEINRLCRSGRFTDYSryiGGIYSSEWFWAKILHITRQDAAVRDAAVSWVELCDWVPALLSDTVAPDKlrrgr 204
                 544444443322269***************9666665555440014444444456677778999999999999***************77777511111 PP

                 HHHCTTTSEETTTTEE....-HHHHHHTT--GG......GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 173 tnasesmlfnikklew....deellailgipee......lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                   a+   lf   + +w    d   l++l+++        l+++   +   +g+l pe ++ lGl ++v ++gg++D  ++a+G
  EHU00936.1 205 CAAGHKALF---HADWnglpDADFLNALDPALTqqldspLFSETWTADIPVGTLSPEWSQRLGLPQQVTISGGAFDCHMGAVG 284
                 555555555...55554445889999999877666888899****************************************98 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.6e-07    0.0021     323     390 ..     451     517 ..     428     549 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.6e-07
                 EGGGCSEEEEESGGGG.SHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCC.EEEEBE CS
       HSP70 323 kkeeidevvlvGGstR.iPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdl.lllDvt 390
                 ++  +++++ +GG +R  P++ ++  +++++++   v  De+ a+GAA+ a+v +g    +d+   +Dv+
  EHU00936.1 451 QAIPVENILTLGGIARkSPAIMQACCDVMNRPL-DIVASDECCALGAAIFAAVAAGV--HRDVeQAQDVM 517
                 4556889999***99956***********9865.689*******************4..33431235555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4264.18
//
Query:       EHU00937.1  [L=327]
Description: periplasmic-binding component of an ABC superfamily L-arabinose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-91  305.2   0.0    4.9e-91  305.0   0.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      5e-21   75.4   1.2    6.2e-21   75.1   1.2    1.1  1  Peripla_BP_4  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0   0.0   5.5e-95   4.9e-91       2     278 ..      26     319 ..      25     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 5.5e-95
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T.... CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap.... 92 
                    klg++++q++eP+f++++k+++ka+k++g++v+++a++++e++++aid+l+a+g++g++i+t+d++ +++i aka++ g++via++d+++++    
    EHU00937.1  26 MKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAANGAKGFVICTPDPKlGSAIMAKARGyGLKVIAVDDQFVNAkgkp 122
                   69*********************************************************************************************** PP

                   .TTS-EEEE-HHHHHHHHHHHHHHHHHHHT..G...EEEEEE-TTS.HHHHHHHHHHHHHHHTT-.GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT- CS
  Peripla_BP_1  93 .dgvPcvipddtqageestqkLiaeghkrp..i...allegpesal.takervqGflaalaeaGl.evkdvhvalgsndiedaaealnelleshPei 181
                    d vP+v++++t++ge+++q+L++e++kr+  +   a++++++++l ta++r++G+++al++aG+ e+++++v+++sndi++a++a n+ll++hPe+
    EHU00937.1 123 mDSVPLVMMAATKIGERQGQELYKEMQKRGwdVkdtAVMAITANELdTARRRTGGSMDALKAAGFpEKQIYQVPTKSNDIPGAFDAGNSLLVQHPEV 219
                   *******************************98999************************************************************* PP

                   S..EEE-SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH......-SEEEE--EEE CS
  Peripla_BP_1 182 d..aivaindeaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki......nkerehprvll 270
                   +  +iv++nd+++lG+v+a++++G +k+++ ++++i++v+++++L+ka++t++++s+l++++++    G+k+s+m+++++      +k++e+++v+l
    EHU00937.1 220 KhwLIVGMNDNTVLGGVRATEGQG-FKAADVIGIGINGVDAVSELSKANATGFYGSLLPSPDIH----GYKSSQMLYNWVskgqepPKFTEVTDVVL 311
                   ************************.***************************************....***************************** PP

                   EETTTHHH CS
  Peripla_BP_1 271 ipvkflke 278
                   i+++++k 
    EHU00937.1 312 ITRDNFKT 319
                   *****986 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   1.2   6.9e-25   6.2e-21       2     254 ..      29     294 ..      28     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 6.9e-25
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT....GCTTT CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd....dapsg 94 
                   g++vk +++p+f++ ++ +++a k+lg+ev+ +  a +d ++  ++i+++ a+g++g+++   d++  +++++ka+  G +V+a+d +      +  
    EHU00937.1  29 GFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDGEKTLNAIDSLAANGAKGFVICTPDPKLGSAIMAKARGYGLKVIAVDDQfvnaKGKPM 123
                   799****************************99..******************************************************85444444 PP

                   -CEEEEEC-HHHHHHHHHHHHHHHCTTH.....EEEEEETSCCCHHHHHHHHHHHHHHHHH..-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.. CS
  Peripla_BP_4  95 erlayvgfdneaaGelqaeylaeklggk....kgkvvilaGspgdpnaeeriegfrkvlke..ypgikivaevaganwdaekaqqalealltanp.. 183
                   + +  v    +++Ge q++ l + + ++    k + v+   +     a+ r+ g +++lk+  +p+ +i ++     +d   a +a ++ll ++p  
    EHU00937.1 124 DSVPLVMMAATKIGERQGQELYKEMQKRgwdvKDTAVMAITANELDTARRRTGGSMDALKAagFPEKQIYQVPTK-SNDIPGAFDAGNSLLVQHPev 219
                   45558999**********************974444444444445555578**********99999999986444.79999***********99774 PP

                   .ECEEEESSCCHHHCHHHHHHHTTT.TSTEE...EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHH CS
  Peripla_BP_4 184 .ldgilaandgmaegalealeaagl.agkvv...vtgqDatpealeaikdGtidatvaqdpyelgyaavelavall 254
                       i+++nd++++g ++a+e +g+ a +v+   + g+Da +e  +a + G  +++ + +p   gy + +++++ +
    EHU00937.1 220 kHWLIVGMNDNTVLGGVRATEGQGFkAADVIgigINGVDAVSELSKANATGF-YGSLLPSPDIHGYKSSQMLYNWV 294
                   4446788******************655666888888898888888888887.68999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2658.14
//
Query:       EHU00938.1  [L=506]
Description: ATP-binding component of an ABC superfamily L-arabinose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-51  173.0   0.0    8.3e-30  104.1   0.0    2.2  2  ABC_tran     ABC transporter
      2e-15   57.4   0.1     0.0006   19.7   0.0    3.2  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    4.7e-05   23.3   0.3    0.00053   19.9   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
     0.0018   18.0   0.1     0.0049   16.6   0.1    1.7  1  AAA_29       P-loop containing region of AAA domain
     0.0092   16.0   0.4          6    6.9   0.0    2.3  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
  ------ inclusion threshold ------
       0.01   15.3   0.0       0.13   11.6   0.0    2.3  1  SMC_N        RecF/RecN/SMC N terminal domain
      0.016   15.7   0.1       0.03   14.8   0.1    1.3  1  AAA_23       AAA domain
      0.022   14.5   0.5       0.73    9.5   0.0    2.9  3  AAA_30       AAA domain
      0.035   14.4   0.0      0.075   13.3   0.0    1.6  1  GAD          GAD domain
      0.066   13.3   0.3       0.76    9.9   0.0    2.4  2  MMR_HSR1     50S ribosome-binding GTPase
       0.08   12.6   0.1       0.45   10.2   0.0    2.2  3  AAA_15       AAA ATPase domain
       0.11   12.1   0.0       0.19   11.3   0.0    1.3  1  AAA_27       AAA domain
       0.31   11.3   4.1        1.9    8.7   0.1    3.2  3  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0     6e-33   8.3e-30       1     137 []      23     172 ..      23     172 .. 0.89
   2 !   67.0   0.0   1.7e-21   2.4e-18       4     136 ..     275     427 ..     273     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 6e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+++s++++ g+++a++GenGaGKStLlk+l+g + p  Gei+++gk+++  +++  l++ ++++ qe +l pe++v+en                  +
  EHU00938.1  23 LQDISFECHGGQVHALMGENGAGKSTLLKILSGSYLPSGGEIRIKGKPMNFqHTTDALDAGVAIIYQELHLVPEMSVAENiylgqlphkhglvnrkLLR 121
                 789***********************************************9778899***************************999999855443333 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  e+   l++lg++ ++d ++    + LS Gq+q+v++a+al+++++++ +DEpt+
  EHU00938.1 122 YEAGLQLKNLGMDIDPDMPL----KYLSLGQWQMVEIAKALARNARIIAFDEPTS 172
                 33555666666666777777....*****************************96 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 1.7e-21
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................xxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................esd 82 
                 +sl++++ge+v+++G  GaG + Llk l g ++   G+illdg++l+   ++   r+ +  +p++   + + p ++vr+n                +  
  EHU00938.1 275 ISLNVHAGEIVGLFGLVGAGRTELLKGLFGATRLRGGRILLDGEPLNVtAPIDAIRAGVMLCPEDrkaEGIIPVHSVRDNinisarrhnltagcliKNG 373
                 89*********************************************989***************99889999999******99999999999999888 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  e+++a s+++  ++k+  +++   +LSgG +q+  l r l ++ k++llDEpt
  EHU00938.1 374 WEVKNADSHIRSLKIKTPSADQLIMNLSGGNQQKAILGRWLSEEIKVILLDEPT 427
                 889999999999999999999999*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     6e-06    0.0082       2      21 ..      36      55 ..      35      91 .. 0.77
   2 !   19.7   0.0   4.3e-07    0.0006     191     297 ..     120     201 ..      98     206 .. 0.78
   3 !   18.5   0.0     1e-06    0.0014     234     296 ..     397     456 ..     287     463 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldl 21
                 +l G Ng+GKS+LL++l++
  EHU00938.1 36 HALMGENGAGKSTLLKILSG 55
                5799**************75 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.3e-07
      AAA_21 191 slklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrng 289
                  + ++++ l +lg  ++  ++ +                       lS G+ ++  ++ al+r +   +++++DEp ++L  + +  l++++++l+++g
  EHU00938.1 120 LRYEAGLQLKNLGMDIDPDMPLKY----------------------LSLGQWQMVEIAKALARNA---RIIAFDEPTSSLSAREIDNLFRVIRQLRAEG 193
                 555555555555555555555444......................4******************...*****************************99 PP

      AAA_21 290 aQviltTH 297
                   v+ ++H
  EHU00938.1 194 RVVLYVSH 201
                 99999999 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 + +lS G ++  a+l   l+     +++l+DEp  g++  + ++++ l+ +l++ng+ v++++
  EHU00938.1 397 IMNLSGGNQQK-AILGRWLSEEI--KVILLDEPTRGIDVGAKHEIYNLIYQLANNGIAVLFAS 456
                 45679999999.88888888888..7*********************************9988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.9e-07   0.00053      88     141 ..      21      77 ..      12      82 .. 0.79
   2 ?    0.5   0.0      0.35   4.8e+02      98     128 ..     281     311 ..     261     316 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.9e-07
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-----..-------- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek..lgrGkhTT 141
                  ++l++++ ++++ ++ +l+G+ G+GKStL++ l ++   + ge++ k    + +hTT
   EHU00938.1  21 KALQDISFECHGgQVHALMGENGAGKSTLLKILSGSYLPSGGEIRIKgkPMNFQHTT 77 
                  5678999999999*********************99877777776540033456666 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.35
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktg 128
                  +++++ l G  G+G++ L++ l + ++l+ g
   EHU00938.1 281 AGEIVGLFGLVGAGRTELLKGLFGATRLRGG 311
                  5589999*************99998887765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.5e-06    0.0049      15      39 ..      24      50 ..      19      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
      AAA_29 15 htieidlkg..atlltGpsGsGKSTll 39
                ++i+++ +g  ++ l+G++G+GKSTll
  EHU00938.1 24 QDISFECHGgqVHALMGENGAGKSTLL 50
                5667777777899*************8 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0044         6      18      39 ..      30      53 ..      17      60 .. 0.78
   2 !    6.9   0.1    0.0044         6      18      42 ..     281     305 ..     264     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0044
                H..TEEEEEEESTTSSHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrgl 39
                +  g+v +L G+ GaGK+tl + l
  EHU00938.1 30 ChgGQVHALMGENGAGKSTLLKIL 53
                13478899************9976 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0044
                 HTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  18 lgdvilLeGdLGaGKTtlvrglaka 42 
                 +g+++ L G +GaG T l +gl  a
  EHU00938.1 281 AGEIVGLFGLVGAGRTELLKGLFGA 305
                 378899***************9866 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.13      25     212 ..      34     216 ..      17     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
                 SEEEEEESTTSSHHHHHHHHH.HHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAil.FvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seykingkevtkk 121
                 ++ a++G+NG+GKs ll  ++  +L   s  ++r +    + +  ++   +  a v+i++++         +e+s+  +++ ++   ++ + +++  + 
  EHU00938.1  34 QVHALMGENGAGKSTLLKILSgSYLP--SGGEIRIKGKP-MNF--QHTTDALDAGVAIIYQELHLV-----PEMSVAENIYLGQLpHKHGLVNRKLLRY 122
                 6889************9988522333..33355544332.223..457778889999988877766.....8888888888877655666666666666 PP

                 HHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvt 212
                 e   +l++ g++++      +LS G+ ++v +a  +A    + a +  +De  + L ++++ ++ +++++ + +   ++ +s+r e +   +  + v+
  EHU00938.1 123 EAGLQLKNLGMDIDpdmplkYLSLGQWQMVEIAKALA----RNARIIAFDEPTSSLSAREIDNLFRVIRQLRAEgRVVLYVSHRMEEIFALSDAITVF 216
                 7777788888887777888899999999999887776....567789999999999999999999999998877345567888877666666556555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   2.2e-05      0.03      13      38 ..      24      52 ..       8      55 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-05
      AAA_23 13 qeidF...skgltlItGpNGaGKTTildA 38
                q+i F   +  + ++ G+NGaGK+T+l  
  EHU00938.1 24 QDISFechGGQVHALMGENGAGKSTLLKI 52
                5577766777899*************975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00053      0.73      17      48 ..      32      63 ..      25      72 .. 0.83
   2 ?   -0.4   0.0      0.57   7.8e+02      88     120 ..     161     196 ..     141     231 .. 0.62
   3 ?    0.7   0.0      0.27   3.8e+02      20      50 ..     284     314 ..     275     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00053
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggr 48
                g +v++l G  G+GK+t+lk l   +  +gg+
  EHU00938.1 32 GGQVHALMGENGAGKSTLLKILSGSYLPSGGE 63
                55799***************998777666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.57
      AAA_30  88 pgtllivDE.agmvdtkqlaallkaaek..agakvi 120
                 +++++  DE ++ ++++++++l++ +++  a+ +v+
  EHU00938.1 161 NARIIAFDEpTSSLSAREIDNLFRVIRQlrAEGRVV 196
                 235555666445566666666666666532233444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.27
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi 50 
                 ++ l G  G+G t +lk+l  a + +ggr++
  EHU00938.1 284 IVGLFGLVGAGRTELLKGLFGATRLRGGRIL 314
                 67788999**********9999888887765 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.4e-05     0.075       1      81 [.     154     237 ..     154     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-05
                 HHHHHHSTEEEEEEEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESS.....GGEETTTCCCS-HHHHHHHHHHCT--TTEEE CS
         GAD   1 fsealksggsvkalrvpggaaklsrkeideleefakelgakglawikveg.....egltgpiakflteeevkklleavgaeegDil 81 
                 +++al+ + ++ a+  p   ++ls +eid+l ++ ++l a+g++ + v+        l++ i  f ++  v+++ + +++  +D++
  EHU00938.1 154 IAKALARNARIIAFDEPT--SSLSAREIDNLFRVIRQLRAEGRVVLYVSHrmeeiFALSDAITVFKDGRYVRTFTDMANTHHDDLV 237
                 5789999***********..8***********************999998777666689999999999999999999999999997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00055      0.76       3      22 ..      37      56 ..      35      94 .. 0.73
   2 ?    0.8   0.1      0.36   4.9e+02       2      22 ..     285     305 ..     284     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00055
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a++G   +GKStL++ l+g+
  EHU00938.1 37 ALMGENGAGKSTLLKILSGS 56
                799**************984 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.36
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 v+++G   +G + L++ l+g+
  EHU00938.1 285 VGLFGLVGAGRTELLKGLFGA 305
                 89**************99987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00033      0.45      25      43 ..      35      53 ..      21      80 .. 0.83
   2 ?   -1.8   0.0       1.4   1.9e+03     289     332 ..     136     170 ..     111     193 .. 0.79
   3 ?   -1.6   0.0       1.2   1.7e+03     152     217 ..     376     441 ..     368     451 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +  l G+N++GKS++l++l
  EHU00938.1 35 VHALMGENGAGKSTLLKIL 53
                77899************99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
      AAA_15 289 deelplnknGsGvqrllllillileaekkdekeeknvilliEEP 332
                 d + pl++ ++G+ +++ ++  ++++ +          ++++EP
  EHU00938.1 136 DPDMPLKYLSLGQWQMVEIAKALARNARI---------IAFDEP 170
                 56789999999999999888887777766.........777777 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
      AAA_15 152 eeklekekeelkidkedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssl 217
                  +++++ + +lki+  +++ li  l+   ++++ l+  l+++i+ +ll++  R ++   + ++ +l
  EHU00938.1 376 VKNADSHIRSLKIKTPSADQLIMNLSGGNQQKAILGRWLSEEIKVILLDEPTRGIDVGAKHEIYNL 441
                 556667777788888888888888888888888777788888877777777777776665555544 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.19      18      46 ..      25      53 ..      20      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAi 46
                 ++f+ +  ++h ++G N AGKst+l+ +
  EHU00938.1 25 DISFECHGGQVHALMGENGAGKSTLLKIL 53
                578888999****************9855 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0014       1.9       6      25 ..      34      53 ..      30      60 .. 0.84
   2 ?    0.8   0.4       0.4   5.6e+02       8      25 ..     285     302 ..     280     311 .. 0.84
   3 ?    0.4   0.0      0.52   7.2e+02      92     124 ..     418     451 ..     382     463 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0014
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                ++ +++Ge G+GK+tll+ l
  EHU00938.1 34 QVHALMGENGAGKSTLLKIL 53
                66789***********9966 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.4
      AAA_22   8 lvvtGesGtGKTtllrrl 25 
                 + ++G +G+G+T ll+ l
  EHU00938.1 285 VGLFGLVGAGRTELLKGL 302
                 5589**********9976 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.52
      AAA_22  92 ielliiDEaqh.lr...seealeeLrsllnlsrkgvq 124
                 i+++++DE  + ++   ++e+++ + +l+n    g++
  EHU00938.1 418 IKVILLDEPTRgIDvgaKHEIYNLIYQLAN---NGIA 451
                 579999999998878666999999999999...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3542.00
//
Query:       EHU00939.1  [L=328]
Description: L-arabinose transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-42  145.4  38.1    1.7e-42  145.4  38.1    1.4  2  BPD_transp_2     Branched-chain amino acid transport system /
  ------ inclusion threshold ------
      0.024   14.5   0.5      0.024   14.5   0.5    2.6  3  PDR_CDR          CDR ABC transporter
        0.1   12.6   2.5       0.55   10.3   1.9    2.6  2  Phage_holin_2_1  Bacteriophage P21 holin S


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.46   2.8e+03     132     143 ..      31      42 ..       9      46 .. 0.57
   2 !  145.4  38.1   2.9e-46   1.7e-42       9     268 .]      60     317 ..      52     317 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.46
  BPD_transp_2 132 avivllalllvl 143
                    v++ll++++++
    EHU00939.1  31 VVFALLFIACAI 42 
                   122244444443 PP

  == domain 2  score: 145.4 bits;  conditional E-value: 2.9e-46
  BPD_transp_2   9 aailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltlllltg 105
                    +  +++A G+ ++   +G ++l++++++a +++v+a+++++ +s l+l+++++ll+g++ g+++g+ ++rlk++ li+tl+++ +++gl++     
    EHU00939.1  60 MSMSGMVACGMLFCL-ASGDFDLSVASVIACAGVVTAVVINMSES-LWLGVAAGLLLGVITGFINGFVIARLKINALITTLATMQIVRGLAY----- 149
                   566799*********.****************************9.**********************************************..... PP

  BPD_transp_2 106 itsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllg 202
                   i+s+ k +   +e +++ g   + ++ +  +++l  ++++ +ll++t fGr+  a+g+neeaar++G++v r++++ f++sg++++ aG++la + +
    EHU00939.1 150 IFSDGKAVGIEDERFFVLGFANWLGVPAPIWITLGTMVIFAFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTRIIIFILSGLVSAAAGIILASRMT 246
                   9999999999999999998888888777779****************************************************************** PP

  BPD_transp_2 203 sippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   s++p +++g+++ +i a+vlGg+      g +  +++G li+g+v++ +++ll i++  ++v+ g++l++++
    EHU00939.1 247 SGQPMTSIGYELVVISACVLGGVslkggiGKISYVIAGVLILGTVEN-AMNLLNISPFSQYVVRGLILLAAV 317
                   ***********************************************.*********************986 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.5     4e-06     0.024      45      78 ..      22      55 ..      17      61 .. 0.86
   2 ?    0.9   0.1     0.074   4.4e+02      51      87 ..     119     155 ..     103     158 .. 0.70
   3 ?   -3.5   0.2       1.7     1e+04      47      59 ..     180     192 ..     177     197 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-06
     PDR_CDR 45 hlwrnfgiliaflifflalyllatelisaekskg 78
                 +w nfg l++f+++f+a+ +++ ++ s+ ++kg
  EHU00939.1 22 RVWDNFGMLVVFALLFIACAIFVPNFGSFINMKG 55
                69********************998877766665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.074
     PDR_CDR  51 giliaflifflalyllatelisaekskgevlvfkrgk 87 
                 g + +f+i  l +++l+t+l +++  +g + +f  gk
  EHU00939.1 119 GFINGFVIARLKINALITTLATMQIVRGLAYIFSDGK 155
                 3444555666667778888888887777777777766 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.7
     PDR_CDR  47 wrnfgiliaflif 59 
                 w  +g ++ f+++
  EHU00939.1 180 WITLGTMVIFAFL 192
                 6666655555544 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.9   9.1e-05      0.55      24      51 ..      97     122 ..      81     128 .. 0.77
   2 ?   -2.4   0.0      0.83     5e+03       3      16 ..     143     156 ..     142     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.1e-05
  Phage_holin_2_1  24 ldklspeeWsaigvlgglvigllTyltn 51 
                      + ++s + W  +gv++gl++g++T ++n
       EHU00939.1  97 VINMSESLW--LGVAAGLLLGVITGFIN 122
                      555666666..8**************99 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.83
  Phage_holin_2_1   3 iatgvsYgaSggsi 16 
                      i+ g++Y +S g +
       EHU00939.1 143 IVRGLAYIFSDGKA 156
                      788999*9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2220.62
//
Query:       EHU00940.1  [L=305]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-24   85.6   0.1    4.3e-24   85.0   0.1    1.3  1  AraC_binding  AraC-like ligand binding domain
    7.5e-21   74.2   1.3    1.9e-20   72.9   0.2    2.1  2  HTH_18        Helix-turn-helix domain
      5e-19   67.9   0.0    6.8e-10   38.8   0.0    2.4  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
  ------ inclusion threshold ------
      0.034   13.9   0.0      0.068   12.9   0.0    1.4  1  Cupin_2       Cupin domain


Domain annotation for each model (and alignments):
>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.1   9.6e-28   4.3e-24       3     136 .]      27     161 ..      25     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 9.6e-28
                   EEEEEETTSTT-SEEEETT-..SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTS.EEEEEEEEE---GGGGGGG---EEETTEE CS
  AraC_binding   3 diegieagypdhsfpphvhd..eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsed.gweyrwlyfegelleriledssilagapl 96 
                   ++++i a+ p + f  + h+   y++ ++++G+gr++ +++ +d++pG+++L++p + H+y  +++   w++rw+yf++++++  + ++++ +++ +
    EHU00940.1  27 GLTPITADGPLDFFIDRPHGmkGYILNLTIKGKGRVFDGEKAFDCEPGEMLLFQPKTAHYYGRAPDSpQWFHRWVYFRPRAYWHDWLRWQDEQEGVG 123
                   68899999******77666666*******************************************999************************99999 PP

                   E..E---TTTHHHHHHHHHHHHHHHT-SSTTHHHHHHHHH CS
  AraC_binding  97 lpalledeelaqllralfrlleetrsgddllleallyell 136
                   +  l+  e+l   +++lf+ +e+t+++++ ++e+l+++ll
    EHU00940.1 124 R--LRLPESLRGEFDRLFATIEQTHNSSRRFAEELAMNLL 161
                   8..***********************************97 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.33   1.5e+03      20      42 ..     145     167 ..     134     191 .. 0.73
   2 !   72.9   0.2   4.2e-24   1.9e-20       1      81 []     204     283 ..     204     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.33
                 TSS-HHHHHHHHHHHHHHHHHHS CS
      HTH_18  20 lgltpkeylrrlRlerArrlLle 42 
                 ++ + ++++ +l ++   rlLl+
  EHU00940.1 145 THNSSRRFAEELAMNLLERLLLR 167
                 56666777777777777777775 PP

  == domain 2  score: 72.9 bits;  conditional E-value: 4.2e-24
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +a+++++s+++L +lf++++g++  +++ + R+ rA+ lL ++t+ ++a i  ++G++d+ +Fsr frk+ g++Ps++rrr
  EHU00940.1 204 VARHVCLSPSRLAHLFREQMGVNLLRWREDQRVIRAKLLL-QTTQEPIASIGREVGYDDQLYFSRVFRKRVGVSPSDFRRR 283
                 59************************************88.78************************************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.2e-10   4.1e-06       3      35 ..     193     225 ..     191     231 .. 0.94
   2 !   38.8   0.0   1.5e-13   6.8e-10       2      42 .]     244     282 ..     243     282 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 9.2e-10
                 CCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS CS
    HTH_AraC   3 enlstnltiediAdelgfSrsyFsrlFkketGm 35 
                 ++l+++ +ie++A ++++S+s + +lF++++G+
  EHU00940.1 193 NHLASEVKIEEVARHVCLSPSRLAHLFREQMGV 225
                 799*****************************7 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 1.5e-13
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +   +t   i++i  e+g+ ++ yFsr+F+k++G++Ps +r+
  EHU00940.1 244 Q---TTQEPIASIGREVGYdDQLYFSRVFRKRVGVSPSDFRR 282
                 6...78899*******************************96 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.068      26      59 ..      56      89 ..      45      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                EESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE CS
     Cupin_2 26 leGegeltvdgeeveleaGdsvyfpagtpHrfrN 59
                ++G+g++  +++ ++ e+G++++f ++t H+++ 
  EHU00940.1 56 IKGKGRVFDGEKAFDCEPGEMLLFQPKTAHYYGR 89
                89******999********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 2025.77
//
Query:       EHU00941.1  [L=56]
Description: oxidoreductase domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0012   19.7   0.0     0.0013   19.6   0.0    1.0  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     7e-08    0.0013       1      41 [.       5      45 ..       5      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7e-08
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHH CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraea 41
                  lrv++iG+G++ + +++pl + +++ e++a+ ++da++ +a
    EHU00941.1  5 LRVGLIGYGFASKTFHAPLIAGTPEVELAAISSSDASKVHA 45
                  69*********888888*******************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 433.80
//
Query:       EHU00942.1  [L=128]
Description: oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-12   48.0   0.0    1.3e-12   47.8   0.0    1.1  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
  ------ inclusion threshold ------
      0.024   15.5   0.0      0.034   15.0   0.0    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   1.4e-16   1.3e-12       1      89 [.      43     123 ..      43     128 .] 0.86

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.4e-16
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEE CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvl 89 
                     K l+++g+lGev+++  + + +r++ e + rw+++k  ++G+++dlg H +D++  LfG+p +  ++l   ++ ++ a+ +d++   ++
      EHU00942.1  43 KGLLAAGELGEVRYF--ESHFDRFRLEVRQRWREMKGAGSGIWYDLGPHLLDQALQLFGPPVAINVDL---AEMRPGAQTTDYF---HA 123
                     7799***********..5888888888888888888899**********************9999999...6888888888888...44 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.8e-06     0.034      90     119 ..       1      30 [.       1      31 [. 0.94

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-06
                   EEESSS-SSHHHHHHHHHHHHHHTS-EEEE CS
  GFO_IDH_MocA  90 llEKPlattveeakelvelaekkgklvsvg 119
                   +++KP++ t+++a+el +la+ kg l+sv 
    EHU00942.1   1 MVDKPFTVTLSQARELDALAKAKGLLLSVF 30 
                   689***********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1081.69
//
Query:       EHU00943.1  [L=262]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-70  237.4   0.0    2.4e-70  237.2   0.0    1.0  1  DDE_Tnp_IS66    Transposase IS66 family
      2e-16   59.9   0.1    5.2e-16   58.6   0.1    1.8  1  DDE_Tnp_IS66_C  IS66 C-terminal element


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.2   0.0   2.7e-74   2.4e-70      78     281 ..       2     211 ..       1     212 [. 0.98

  Alignments for each domain:
  == domain 1  score: 237.2 bits;  conditional E-value: 2.7e-74
  DDE_Tnp_IS66  78 rvlkpgrgkgkksylWvyvtdkr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkks 167
                   +v +pg+gk+++++lWvyv+d+r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +
    EHU00943.1   2 PVQEPGSGKTRTARLWVYVRDDRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-T 97 
                   7889****************************************************************999**********************98.* PP

  DDE_Tnp_IS66 168 qaaaealarigklyaiereareaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpv 264
                   ++++eal+rigklyaie+e+r  +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v
    EHU00943.1  98 DITTEALKRIGKLYAIEAEIRGSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGV 194
                   ********************94479************************************************************************ PP

  DDE_Tnp_IS66 265 vlgRKnslfagseeGae 281
                   +lgRKn+lfags++G+e
    EHU00943.1 195 ALGRKNWLFAGSDTGGE 211
                   ***************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.1   5.8e-20   5.2e-16       1      39 []     218     255 ..     218     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 5.8e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00943.1 218 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 255
                     9************************9.************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2257.38
//
Query:       EHU00944.1  [L=97]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-34  118.5   0.0    1.1e-34  118.3   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   6.3e-39   1.1e-34      12     100 ..       1      88 [.       1      89 [. 0.98

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 6.3e-39
   TnpB_IS66  12 mRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 mR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00944.1   1 MRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 88 
                 9************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 722.60
//
Query:       EHU00945.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-98  328.8   3.4    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.038   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.041   13.4   2.5      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.28   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.77    8.9   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.5    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.1    7.2   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  326.1   0.0  2.2e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00945.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.2e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00945.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00945.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00945.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00945.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00945.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00945.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00945.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU00945.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00945.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00945.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00945.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00945.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00945.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU00945.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00945.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00945.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00945.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00945.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU00945.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00945.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU00945.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU00945.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00945.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00945.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU00945.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00945.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00945.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU00945.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU00945.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU00945.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00945.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00945.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00945.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1052  (0.0586759); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 3589.96
//
Query:       EHU00946.1  [L=369]
Description: putative oxidoreductase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-14   52.7   0.0    1.2e-13   52.0   0.0    1.3  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   6.5e-18   1.2e-13       3     120 .]       7     132 ..       5     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 6.5e-18
                   EEEETTSHH...HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCT..TESEEEE-S-GGGHHHHHHHHHHTT-EEEE CS
  GFO_IDH_MocA   3 vaiiGaGki...gskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladp..eidavivatpngtheelakaaleagkhvll 91 
                    ++iG+G     g  h  + +   +++ v++ +++++e+ ++  es++++    y+++++   ++  + dav v tp+  h+e++ a++e+g +v++
    EHU00946.1   7 LGFIGGGANsaiGLTHKIASQLDGDFTLVAGCFSRNPEQNRHTGESWNIHperIYDSIQAFILQErhHLDAVAVLTPTPDHHEIITACFENGLAVIC 103
                   68899876666788886677777799*********************************998888889***************************** PP

                   ESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  92 EKPlattveeakelvelaekkgklvsvgy 120
                   EK ++ + + a ++++ + +++ +++v+y
    EHU00946.1 104 EKAMVESHQSALHIMNSEHQHQAKLFVTY 132
                   *************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2693.00
//
Query:       EHU00947.1  [L=388]
Description: putative carbamoyl-phosphate-synthetase protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-05   24.1   0.0    6.3e-05   22.6   0.0    1.7  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    7.6e-05   22.4   0.0    0.00025   20.7   0.0    1.8  1  ATP-grasp_4      ATP-grasp domain
    0.00018   21.1   0.0    0.00032   20.3   0.0    1.4  1  ATP-grasp        ATP-grasp domain
     0.0018   17.8   0.0     0.0054   16.3   0.0    1.8  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
     0.0036   17.4   0.0     0.0052   16.8   0.0    1.3  1  ATP-grasp_3      ATP-grasp domain


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.88   3.2e+03     175     186 ..      72      83 ..      66      94 .. 0.72
   2 !   22.6   0.0   1.8e-08   6.3e-05      28     142 ..     127     240 ..     107     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.88
                      S---STTSHHHH CS
  Dala_Dala_lig_C 175 lPGfTeiSlfpk 186
                      lPG T++S +  
       EHU00947.1  72 LPGVTDVSYLTG 83 
                      7*******8764 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.8e-08
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-..SCEEEEE--ESE.EEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyd..ekvlvEeaiegr.eievavlgneklevsevgeivvkkgfydyeakys 118
                      + ++ ++l +p+++Kp+ + S +G+s v+ +e++++a ++a       + l+E++i+g+     a + n+k+ v   ++     ++y ++    
       EHU00947.1 127 CPEEAAQLPLPLMIKPVDSYSGLGISLVTEREHISAAWRDACAASscGQALIERWIAGDlHSHSAFIVNGKVAVEYFVDEFC--TVYPWQVNS- 217
                      5677899********************************9876552279*******87624455666667666554433332..456655544. PP

                      .TT-EEESS----HHHHHHHHHHH CS
  Dala_Dala_lig_C 119 ddkaqlevpaklekeveekiqela 142
                       ++ +l++pa+++++v++ iq+l+
       EHU00947.1 218 -SSLSLNLPASIKDQVSDCIQALV 240
                      .78888999999999888888876 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.9e-08   0.00025       2     150 ..     135     268 ..     134     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.9e-08
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrly 99 
                  +lP+ iKP++ ++ lG++ + ++e  +aa ++ ++           +  + +++l+E +i G+  +  a+   +G+  +  ++  ef +  + +    
   EHU00947.1 135 PLPLMIKPVDSYSGLGISLVTEREHISAAWRDACAA----------S--SCGQALIERWIAGDLHSHSAFI-VNGKVAVEYFV-DEFCTVYPWQVNSS 218
                  68************************9998888744..........2..45889*****************.99988777665.89999999999999 PP

  ATP-grasp_4 100 vtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnp 150
                   +s ++ +  +++++++++++  +lgl ++ +H  +  + + +  +iE+  
   EHU00947.1 219 SLSLNLPASIKDQVSDCIQALVDELGLCDGLLHTQFISDGK-SFSLIEMTR 268
                  **********************************9987776.688899943 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     9e-08   0.00032      22     136 ..     129     246 ..     120     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 9e-08
                 HHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEE.EEEEEEEETTC-EEE--EEEEEEETTEEEEEEECEE-S CS
   ATP-grasp  22 eaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekE.lsvlvvrsaeGetafypvvetvqedgilrlsvapaevs 115
                 e a++l lp+++K ++ +y+G G s+v ++e+++ a++ +    + ++ ++E ++  +    s+ +v  +    +f++   tv   ++   s+   +++
  EHU00947.1 129 EEAAQLPLPLMIK-PVDSYSGLGISLVTEREHISAAWRDAcaasSCGQALIERWIAGDLHsHSAFIVNGKVAVEYFVDEFCTVYPWQVNSSSLS-LNLP 225
                 6678999******.***********************99989888899*******876541566777766666788888888888888777766.7799 PP

                 CHHHHHHHHHHHHHHHHHTSS CS
   ATP-grasp 116 ekaqkkaeeiakkiveeLggv 136
                 ++++ ++ ++++ +v+eLg +
  EHU00947.1 226 ASIKDQVSDCIQALVDELGLC 246
                 999999999999999999987 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0054      33      91 ..     130     184 ..     107     193 .. 0.89
   2 ?   -3.7   0.0       1.9   6.7e+03     160     179 ..     252     269 ..     234     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
                  HHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SS CS
  CPSase_L_D2  33 iakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkg 91 
                   a+++  P +ik+  +  G+G  +++++e+++++ + a a++    +  q l+e++++g
   EHU00947.1 130 EAAQLPLPLMIKPVDSYSGLGISLVTEREHISAAWRDACAAS----SCGQALIERWIAG 184
                  6889999****************************9999999....68999****9987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
                  EEEEEETTTTEEEEEEEESS CS
  CPSase_L_D2 160 veflldpkskeyyviEvNtR 179
                   +f+ d   k++ +iE+  R
   EHU00947.1 252 TQFISD--GKSFSLIEMTRR 269
                  577777..589999999876 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0052       9      97 ..     112     209 ..     106     272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
                  HHHTTT.S---.....-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEE CS
  ATP-grasp_3   9 kkLkeagvkvP.tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefieGkplSvsllsdgekvlvlavnrqlie 97 
                  ++ +++g++vP    + ee+++ + +l +Kp+d+  g ++++v e+e+  aa    +        l+ ++i G+ +S s+   + kv v  + +++  
   EHU00947.1 112 QWAQKKGYPVPvAVSCPEEAAQLPLPLMIKPVDSYSGLGISLVTEREHISAAWRDACaasscgqaLIERWIAGDLHSHSAFIVNGKVAVEYFVDEFCT 209
                  566788999998778899999*************************99999999888999**************999886544555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2992.72
//
Query:       EHU00948.1  [L=288]
Description: dTDP-4-dehydrorhamnose reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-97  325.1   0.0    3.6e-97  324.9   0.0    1.0  1  RmlD_sub_bind    RmlD substrate binding domain
    3.6e-20   72.5   0.1    7.3e-20   71.4   0.0    1.6  2  Epimerase        NAD dependent epimerase/dehydratase family
    9.9e-17   61.3   0.0    1.3e-16   60.9   0.0    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.8e-12   47.0   0.3    2.3e-11   43.4   0.3    2.6  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.5e-06   26.8   0.0    1.7e-05   24.1   0.0    2.1  1  NAD_binding_4    Male sterility protein


Domain annotation for each model (and alignments):
>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.9   0.0    1e-100   3.6e-97       1     285 [.       1     278 [.       1     280 [. 0.98

  Alignments for each domain:
  == domain 1  score: 324.9 bits;  conditional E-value: 1e-100
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EE CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealAeaaaavgalL 96 
                    m++l+tGa Gql + L +++  +++ +la++++eld+td+ av +++k++kpdv++naAAytavDkaE+++ +a ++na ++e+lA+aa+ +ga +
     EHU00948.1   1 MRVLLTGAYGQLERCLLDRFP-ADWITLACGSAELDITDRVAVVRVVKKFKPDVIMNAAAYTAVDKAETDRTRALKINAIGPENLAQAAKMIGARF 95 
                    89******************9.6799********************************************************************** PP

                    EEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHHHH-SEEEEESS-EE--EEHHHHHHH CS
  RmlD_sub_bind  97 ihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvygekgknfvktmlrlakereelkvvaDqlgsPTsardlAev 192
                    ih+StDyVFdG kk+pY+e+d++ P+n+YG +K++GE+ v +  ++a+++Rtsw+++e+g+nfv+tmlrla++r el+vv+Dq+g+PT+a dlA++
     EHU00948.1  96 IHISTDYVFDGVKKTPYTEQDPPCPINFYGLSKWEGEKRVFEVLPEAIVIRTSWMFSEYGNNFVSTMLRLAQTRSELHVVNDQYGCPTYAGDLAQA 191
                    ************************************************************************************************ PP

                    HHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCHTTSEEEEE-CCCS--SS---SBE-B--HHHHHCCT----BHHHHHHHHHHHH CS
  RmlD_sub_bind 193 llqllekaaeekelagvyHlanegetswlefArailkeagadseevkpistaeyptpAkRPanSvLdtekleatfgiklrewrealkevlkel 285
                    +++l++   +     g+yH+ ++ ++sw efA+ i+ +a++d   v+ i +++yp +A RPa+Sv+++++l+++ gi++ +w+++l+ +l++l
     EHU00948.1 192 MITLADMPEK----RGLYHYCGDVAVSWCEFAQTIFVAAQQDV-VVHGIISSHYPSAAIRPARSVMNSDALSTI-GIPPSDWQDKLRLCLNHL 278
                    ******9998....9************************9987.9*************************9998.9*************9986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0     2e-23   7.3e-20      46     231 ..      32     201 ..       3     207 .. 0.87
   2 ?   -3.0   0.1       1.1     4e+03      60      87 ..     223     250 ..     218     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2e-23
                 EE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHH CS
   Epimerase  46 veldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaa 144
                  eld+tdr+a+ r++k+++pd+++++Aa+  v+   +d+++ +++n++g  nl++aa+  g+ r++++s++ v+  ++++p +e+    p  p + Y++
  EHU00948.1  32 AELDITDRVAVVRVVKKFKPDVIMNAAAYTAVDKAETDRTRALKINAIGPENLAQAAKMIGA-RFIHISTDYVFDGVKKTPYTEQD---PPCPINFYGL 126
                 48************************************************************.****************9988888...999******* PP

                 HHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 145 aKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvda 231
                 +K  gek v ++  +     i++r + +++++      +++++ ++r ++++  e+ +++d        y+ D+a+a++++++ +++
  EHU00948.1 127 SKWEGEKRVFEVLPEA----IVIRTSWMFSEY-----GNNFVSTMLRLAQTRS-ELHVVNDQY--GCPTYAGDLAQAMITLADMPEK 201
                 **********997766....999999999999.....7778888899888888.999998433..3558999999999999988665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 HHHHT-SEEEE--S---HHHHHHSHHHH CS
   Epimerase  60 fkeeqpdavihlAavggvaassedpadf 87 
                 f   q d+v+h    ++++  +++pa+ 
  EHU00948.1 223 FVAAQQDVVVHGIISSHYPSAAIRPARS 250
                 4445889999987788888888888765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   3.8e-20   1.3e-16      58     164 ..      33     135 ..      29     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 3.8e-20
                    E--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHH CS
  GDP_Man_Dehyd  58 kgDltDssslerllaevqpdevynLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPY 153
                    + D+tD+ ++ r++++ +pd ++n AA  +Vd+  ++  + +++n++G  +L +a++ +g    +rf+++St+ v+  v+++p+tE+ p  P + Y
     EHU00948.1  33 ELDITDRVAVVRVVKKFKPDVIMNAAAYTAVDKAETDRTRALKINAIGPENLAQAAKMIG----ARFIHISTDYVFDGVKKTPYTEQDPPCPINFY 124
                    67********************************************************98....69****************************** PP

                    HHHHHHHHHHH CS
  GDP_Man_Dehyd 154 aaaKlyadwiv 164
                    + +K   +  v
     EHU00948.1 125 GLSKWEGEKRV 135
                    ****8777655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.3   6.4e-15   2.3e-11      61     174 ..      34     160 ..      11     163 .. 0.86
   2 ?   -0.8   0.0      0.19   6.7e+02     229     252 ..     178     201 ..     158     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 6.4e-15
                      --TT-HHHHHHHTT..T-SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS..............--SHHHH CS
  Polysacc_synt_2  61 gdvrdkerlekaleelkvdvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkvvliStDKAvn..............PtnvmGa 140
                       d++d+  + ++++++k+dv+++aAA+  V  +e+  + a+k N +g en+++aa+  g  +++ iStD   +              P+n +G+
       EHU00948.1  34 LDITDRVAVVRVVKKFKPDVIMNAAAYTAVDKAETDRTRALKINAIGPENLAQAAKMIGA-RFIHISTDYVFDgvkktpyteqdppcPINFYGL 126
                      599****************************************************99995.8*******7653333444455555558999999 PP

                      HHHHHHHHHHHGGG--SSS--EEEEEEE-EETTG CS
  Polysacc_synt_2 141 tKrlaekllqalakeseekktkfvvvRfGNVlgS 174
                      +K   ek + ++  e+   +t  ++  +GN + S
       EHU00948.1 127 SKWEGEKRVFEVLPEAIVIRTSWMFSEYGNNFVS 160
                      9999999999999999999999999999997766 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
                      --.-EEEHHHHHHHH......... CS
  Polysacc_synt_2 229 dmGepvkivdlakalielsgleek 252
                      + G p+   dla+a+i+l+++ ek
       EHU00948.1 178 QYGCPTYAGDLAQAMITLADMPEK 201
                      568888889********9987665 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   4.9e-09   1.7e-05      89     205 ..      52     149 ..      45     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4.9e-09
                    -EEEE--SS-S.ST...TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHH CS
  NAD_binding_4  89 dviihsaAtvnfde...pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKa 181
                    dvi++ aA + +d+   +  ++l++N  G +++ + ak + +   ++h+ST yv +  +++                  ++++     n Y  sK+
     EHU00948.1  52 DVIMNAAAYTAVDKaetDRTRALKINAIGPENLAQAAKMIGAR--FIHISTDYVFDGVKKT----------------PYTEQDPPCPINFYGLSKW 129
                    89*******9999853355569****************77666..******6666555532................2355667777899999999 PP

                    HHHHHHHHHHHHH---EEEEEE-E CS
  NAD_binding_4 182 laEklvrearrrsglpvvivRpsi 205
                    ++Ek v e   +    ++++R s 
     EHU00948.1 130 EGEKRVFEVLPE----AIVIRTSW 149
                    999999887744....56666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2229.92
//
Query:       EHU00949.1  [L=177]
Description: dTDP-4-dehydrorhamnose 3,5-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-72  242.1   0.0    2.6e-72  242.0   0.0    1.0  1  dTDP_sugar_isom  dTDP-4-dehydrorhamnose 3,5-epimerase


Domain annotation for each model (and alignments):
>> dTDP_sugar_isom  dTDP-4-dehydrorhamnose 3,5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.0   1.5e-76   2.6e-72       2     168 ..       6     174 ..       5     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 1.5e-76
                      -SSTTCEEEEE-EEEETTEEEEEEEEHHHHHHH.TS-----EEEEEEEETTBEEEEEEESSCS---EEEEEEESEEEEEEEE-BTTSTTTT-EE CS
  dTDP_sugar_isom   2 teiegvlliepkvfgDeRGfflesfneeefaea.gleaefvqdnlsvskkgvlRGlHfqkepkaqaklvrvvrGevldvaVDlRkgSptfgkwv 94 
                      t+i++v++i+p+v+gD+RGffle+f++++++++ +++ efvqdn+s+s+++vlRGlHfqk+ ++q+klvrvvrGev+dvaVD+R++Spt+g+wv
       EHU00949.1   6 THIADVKIIQPAVYGDARGFFLETFEKRRYQDLlQTDLEFVQDNYSRSARHVLRGLHFQKT-EPQGKLVRVVRGEVFDVAVDIRPNSPTYGQWV 98 
                      89*****************************8857899*********************77.8******************************* PP

                      EEEEETTT--EEEE-TTEEEEEEE-SSEEEEEEEESS---GGGEEEE-TT-TTTT---..SS.B--HHHHT-B-HH CS
  dTDP_sugar_isom  95 gveLsaenkrqlyipegfahGflvlsdeaevlYkvteyyapesergirwnDpelgidw..eelilSekDkaapsla 168
                      ++ Ls+enk+ql++p+g+ahGf+vlsd a++ Yk+t+yy+p++e++++wnDp+++i+w  e++ilS kD++  sl+
       EHU00949.1  99 SILLSEENKTQLWVPPGLAHGFVVLSDMADFEYKCTQYYNPKDEACLMWNDPDVAIQWpvEQPILSVKDQQGLSLQ 174
                      ************************************************************99*********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1485.37
//
Query:       EHU00950.1  [L=289]
Description: glucose-1-phosphate thymidylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-65  221.4   0.0    1.5e-65  221.2   0.0    1.0  1  NTP_transferase  Nucleotidyl transferase
      3e-10   40.7   0.0    3.7e-10   40.4   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.2   0.0   1.7e-69   1.5e-65       1     246 [.       3     239 ..       3     241 .. 0.98

  Alignments for each domain:
  == domain 1  score: 221.2 bits;  conditional E-value: 1.7e-69
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      k+++LaGG+G+RL+P+t+ ++k+l+pv++k ++i+++ls l+ +gi++i+v++t+e+ + +++ l++gs+fgv++++a++p+++g+A+A+++++
       EHU00950.1   3 KGIVLAGGTGSRLHPVTCGVSKQLLPVYDK-PMIYYPLSVLMLAGIQDILVITTPEDPAGFQRLLGDGSHFGVNLQYAVQPSPDGLAQAFIIGE 95 
                      79****************************.*************************************************************** PP

                      HHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSHCSEECCSEEEEETTHHH CS
  NTP_transferase  95 elledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeakaselassGiYvfnsevll 188
                       +++ e     +lvLg+++++++ + + +++ +++++   +t++ ++v +++++Gv+++d+++r+ +++EKP+ +k s++a++G+Y+++++v  
       EHU00950.1  96 SFVAGERC---ALVLGDNIFFGQSFGKKLEDVVARDQ--GATVFGYQVMDPERFGVVQFDKQFRALSIEEKPAVPK-SNYAVTGLYFYDNNVCA 183
                      *******7...**************************..9************************************.***************** PP

                      HHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 189 flakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleanekla 246
                      ++ + +++++rge eit +++ +l++g  ++ +l ++++ W D+Gt++sllea+ +++
       EHU00950.1 184 MA-REVRPSERGELEITTLNQMYLNDGLLNVVILGRGFA-WLDTGTHESLLEASHFIH 239
                      *9.67*********************************6.*************99875 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   4.2e-14   3.7e-10       1     120 [.       4     134 ..       4     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 4.2e-14
                   EEEEEESS-TTT.....TTTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC......HHHHHHTTCT..S-EEE-TTSS-SHHHHHHHHHHHH. CS
  NTP_transf_3   1 aviLAGGrSsRm.....ggdKallplggkpllervldalraagvdevvvvggde......evlaalarlg..vrvvededpgkgplaslaaalraaa 84 
                   +++LAGG +sR+     g  K+llp+ +kp++ + l  l  ag+++++v++ +e       +l +  ++g  +++++++    g ++++  + + + 
    EHU00950.1   4 GIVLAGGTGSRLhpvtcGVSKQLLPVYDKPMIYYPLSVLMLAGIQDILVITTPEdpagfqRLLGDGSHFGvnLQYAVQPS-PDGLAQAFIIGESFV- 98 
                   79**********6655555*******************************988623222222223344452244455553.479999999999998. PP

                   SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEE CS
  NTP_transf_3  85 dadavlvlacDmPlltpelverllaaaaasgadvvv 120
                     ++++++++D +++ +++ ++l +  a++++++v+
    EHU00950.1  99 AGERCALVLGDNIFFGQSFGKKLEDVVARDQGATVF 134
                   79*****************99999999877766553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2136.17
//
Query:       EHU00951.1  [L=322]
Description: hypothetical protein CKS_3307 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-05   23.7   0.1    0.00019   21.5   0.1    2.1  1  HNH_2     HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.1e-08   0.00019       1      72 []     216     274 ..     216     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-08
       HNH_2   1 Cvitg......iddpslleaAHIiPwslssffndlilnrfeigrillekgstidspsNgllLspdiHklFdqflfafe 72 
                 Cvitg        +p ++ea+HI  ++         +                +s++Ngl L++d+ +lF +++++++
  EHU00951.1 216 CVITGtslidqHPWP-WVEACHIDTREND------EGF------------LADNSVDNGLFLRSDLQRLFVNRMISID 274
                 *****9998666666.*******994433......223............4578*******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2389.21
//
Query:       EHU00952.1  [L=240]
Description: RNA polymerase, sigma 28 (sigma F) factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-19   67.8   4.0    4.3e-17   61.4   0.7    2.4  2  Sigma70_r4    Sigma-70, region 4
    1.3e-16   60.1   3.1    2.4e-16   59.2   0.4    2.3  2  Sigma70_r2    Sigma-70 region 2
    9.6e-15   54.4   1.3    1.7e-14   53.6   0.7    1.7  2  Sigma70_r3    Sigma-70 region 3
    1.3e-10   40.8   3.1    1.5e-09   37.4   1.0    2.5  2  Sigma70_r4_2  Sigma-70, region 4
     0.0095   16.1   0.0      0.012   15.7   0.0    1.2  1  Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
  ------ inclusion threshold ------
      0.034   14.4   0.2       0.16   12.2   0.0    2.0  2  UPF0122       Putative helix-turn-helix protein, YlxM / p13 l
      0.046   13.3   0.3       0.73    9.4   0.1    2.2  2  GerE          Bacterial regulatory proteins, luxR family
        0.3   11.4   2.7       0.37   11.1   2.7    1.1  1  zf-C4H2       Zinc finger-containing protein


Domain annotation for each model (and alignments):
>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0016       3.6      21      41 ..     115     135 ..     107     138 .. 0.84
   2 !   61.4   0.7   1.9e-20   4.3e-17       1      50 []     185     234 ..     185     234 .. 0.98

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
                 --HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4  21 lTleEIgerlgiSrerVrqie 41 
                  + +E++++l++S e  rqi+
  EHU00952.1 115 ASEQEVAQQLNVSIEEYRQIL 135
                 5669***********999995 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 1.9e-20
                 HHHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 a++ Lpere++vl+l++ e+l+l+EIg++l++ ++rV+q++++A+++LR+
  EHU00952.1 185 AIEALPEREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRA 234
                 7899*********************************************5 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.4   1.1e-19   2.4e-16       1      70 [.      16      88 ..      16      89 .. 0.98
   2 ?    0.6   0.1      0.22   4.9e+02       2      34 ..      93     128 ..      93     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 1.1e-19
                HHHHHHHHHHHHHHHC...T-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  1 lverylplvkrlarrl...lgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                l++ry plv++ a rl   l+ + + +Dl+Q + ++l+ aver+d+ +g++f+++++ ++r+a++d+lR+r++
  EHU00952.1 16 LWQRYVPLVRHEALRLqvrLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW 88
                689********************************************************************98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHC...T-THHHHHHHHHHHHHHH CS
  Sigma70_r2   2 verylplvkrlarrl...lgsgadaeDlvQeaflrl 34 
                 v+r+ + v + ++++   lg++a+ ++++Q  ++ +
  EHU00952.1  93 VRRNAREVAGAMHQVeqmLGRAASEQEVAQQLNVSI 128
                 578888888888887777999999999999988865 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.7   7.7e-18   1.7e-14       3      72 ..      97     166 ..      95     171 .. 0.93
   2 ?   -3.0   0.0       3.5   7.9e+03      24      40 ..     208     224 ..     206     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 7.7e-18
                 HHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSX CS
  Sigma70_r3   3 lnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeae 72 
                  ++++ a+++ eq lgr+++++E+A++L++s+e++r++l +++++++++++   ee+++  +l++  + e
  EHU00952.1  97 AREVAGAMHQVEQMLGRAASEQEVAQQLNVSIEEYRQILLDTNNSQLFSYDEYREEHGDSAELVTEGHEE 166
                 68999*********************************************************99987554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.5
                 HHHHHHHTXXHHHHHHH CS
  Sigma70_r3  24 eEiAeeLglseekVrev 40 
                  Ei + L++ e++V ++
  EHU00952.1 208 KEIGAVLDVGESRVSQL 224
                 58888888888888876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.038        84      28      40 ..     116     128 ..     115     136 .. 0.87
   2 !   37.4   1.0   6.8e-13   1.5e-09       1      54 []     179     232 ..     179     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.038
                   -HHHHHHHHT--H CS
  Sigma70_r4_2  28 sykEIAellgise 40 
                   s +E+A++l++s 
    EHU00952.1 116 SEQEVAQQLNVSI 128
                   789********96 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 6.8e-13
                   HHHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   1 rqalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   r+++ ea+++Lper++++++l+y e+l  kEI ++l++ e+ V +  s+A k+L
    EHU00952.1 179 RERVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRL 232
                   67899***********************************************98 PP

>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.4e-06     0.012      51     137 ..     144     233 ..     100     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.4e-06
                   S-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TCEEECCCCCEECTTECEEE....CTHCHHHHHHC.SCS.EEEEEEEEEH.HHHHHHHH CS
  Sacchrp_dh_C  51 Wspegvlreltnpakvlengqvkevpgsellkgakkpiyilpglslegypnrds....lpyeelyglpeaktl.frgtlrypgf.sellkslk 137
                   +s +   +e + +a+++ +g+++  p+++l++g+ +++ i+   + e++p+r+     l+y+e  +l+e+  +   g  r  +  s+++k l+
    EHU00952.1 144 FSYDEYREEHGDSAELVTEGHEEANPLHQLMEGSLRERVIE---AIEALPEREKmvltLYYQEELNLKEIGAVlDVGESRVSQLhSQAIKRLR 233
                   77788899999*********************999999997...6899****99999999***999998844459999999966699988876 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       0.7   1.6e+03      35      64 ..     116     146 ..     102     151 .. 0.65
   2 ?   12.2   0.0   7.2e-05      0.16      18      55 ..     189     226 ..     185     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.7
     UPF0122  35 SlsEiAeefnvsrqavydnikrt.eklleky 64 
                 S +E+A++ nvs +   + +  t +++l++y
  EHU00952.1 116 SEQEVAQQLNVSIEEYRQILLDTnNSQLFSY 146
                 5578888888876665554433313455555 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.2e-05
     UPF0122  18 LTekqanylelyyadDlSlsEiAeefnvsrqavydnik 55 
                 L e+ + +l lyy+++l l+Ei    +v  + v++  +
  EHU00952.1 189 LPEREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHS 226
                 6789999********************99999876543 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.086   1.9e+02      19      31 ..     116     128 ..     106     129 .. 0.83
   2 ?    9.4   0.1   0.00033      0.73       3      47 ..     189     234 ..     187     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.086
                 -HHHHHHHHTS-H CS
        GerE  19 snkeIAeelniSe 31 
                 s +e+A++ln+S 
  EHU00952.1 116 SEQEVAQQLNVSI 128
                 6789*******95 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00033
                 S-HHHHHHHHHHCTTS-H.HHHHHHHTS-HHHHHHHHHHHHHHHT- CS
        GerE   3 LskRErevLrllaeGksn.keIAeelniSekTVkvhksnimkKLnv 47 
                 L +RE+ vL+l ++ + n keI++ l++ e  V+   s++ k+L++
  EHU00952.1 189 LPEREKMVLTLYYQEELNlKEIGAVLDVGESRVSQLHSQAIKRLRA 234
                 779*********9988777**************9999999999987 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.7   0.00016      0.37      10     127 ..      88     205 ..      79     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
     zf-C4H2  10 leleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsv.ikeaeeekekslekakklyeeykklkeevnelrselglek 107
                  + ++++ + ++  +a+++ e++l    +e e  +q  +  +ee r+I  D n+       e +ee+  s e +++ +ee ++l++ ++  ++e  +e 
  EHU00952.1  88 WAPRSVRRNAREVAGAMHQVEQMLGRAASEQEVAQQ-LNVSIEEYRQILLDTNNSQLFsYDEYREEHGDSAELVTEGHEEANPLHQLMEGSLRERVIEA 185
                 555667777777788999999999999998876655.56679**********987654157889999999999************************** PP

     zf-C4H2 108 ledleeeeeellkeeifekq 127
                 +e l e e+ +l+  + e+ 
  EHU00952.1 186 IEALPEREKMVLTLYYQEEL 205
                 *******9998887664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1908.36
//
Query:       EHU00953.1  [L=167]
Description: FliZ family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-08   34.0   0.0    7.4e-08   32.6   0.0    1.8  1  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.013   15.5   0.1        2.2    8.3   0.0    2.3  2  zf-C2HC5         Putative zinc finger motif, C2HC5-type
      0.027   14.7   4.6       0.06   13.5   0.6    2.4  2  zf-AN1           AN1-like Zinc finger
      0.035   14.1   0.6       0.61   10.2   0.0    2.3  2  zf-BED           BED zinc finger
      0.036   14.2   0.2       0.98    9.6   0.0    2.2  2  FYVE             FYVE zinc finger
      0.046   13.3   0.7       0.93    9.1   0.0    2.3  2  RecR             RecR protein
       0.12   11.9   0.2       0.12   11.9   0.2    1.9  2  zf-ribbon_3      zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.9e-11   7.4e-08       3      84 .]      90     166 ..      88     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.9e-11
                      HHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1   3 qfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvreg 84 
                      +f++yL++++++sp T+r+Y+ +Lrr+ + l+  +   +e+l+ ++ +++l+   e +l  +  +++++alr++ qfl +++
       EHU00953.1  90 AFKQYLFEQTEMSPSTIREYVVRLRRLDDTLKA-RNFPAEKLKGNSWHQCLE---E-DLPDAGNNNYRIALRKYDQFLGWQQ 166
                      79*******************************.555566666665555554...4.6778999**************9885 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00088       2.2      17      27 ..      21      31 ..      13      37 .. 0.85
   2 ?    5.0   0.0    0.0096        25      16      31 ..      67      82 ..      63      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00088
    zf-C2HC5 17 apnClnCGkii 27
                 +nC +CGk++
  EHU00953.1 21 QTNCSHCGKVL 31
                689******97 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0096
    zf-C2HC5 16 aapnClnCGkiiCake 31
                ++ +C  C  i C+ +
  EHU00953.1 67 LTALCRFCSDIFCNTH 82
                5778999999999875 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2     0.067   1.7e+02      14      22 ..      22      30 ..      15      31 .. 0.79
   2 ?   13.5   0.6   2.3e-05      0.06      14      29 ..      69      84 ..      62      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.067
      zf-AN1 14 fkCryCgkv 22
                 +C++Cgkv
  EHU00953.1 22 TNCSHCGKV 30
                68****985 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.3e-05
      zf-AN1 14 fkCryCgkvFClkHrl 29
                  Cr+C+  FC +H  
  EHU00953.1 69 ALCRFCSDIFCNTHPN 84
                57************65 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024      0.61      13      28 ..      18      33 ..       9      40 .. 0.84
   2 ?    2.0   0.1     0.086   2.2e+02      17      26 ..      69      78 ..      64      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
                GSS--EETTTTEE--- CS
      zf-BED 13 keqkavCryCgkilsr 28
                k+  + C +Cgk+l+r
  EHU00953.1 18 KHSQTNCSHCGKVLDR 33
                588999*******998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.086
                -EETTTTEE- CS
      zf-BED 17 avCryCgkil 26
                a Cr+C  i+
  EHU00953.1 69 ALCRFCSDIF 78
                67****9886 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.047   1.2e+02      25      35 ..      21      31 ..      13      50 .. 0.80
   2 ?    9.6   0.0   0.00038      0.98      28      41 ..      71      84 ..      68     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.047
                -EE-TTT--EE CS
        FYVE 25 rhhCrlCGkvv 35
                +  C +CGkv+
  EHU00953.1 21 QTNCSHCGKVL 31
                45788888875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00038
                -TTT--EE-STTS- CS
        FYVE 28 CrlCGkvvCekCss 41
                Cr C +++C+++ +
  EHU00953.1 71 CRFCSDIFCNTHPN 84
                *********76543 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00036      0.93       2      25 ..       7      30 ..       6      34 .. 0.90
   2 ?    2.3   0.2     0.048   1.2e+02      29      36 ..      69      76 ..      66      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00036
                HHHHHHHHHHHHHH-EE-TTT--E CS
        RecR  2 aeeLaeaLqeakekvrhCsrCgnl 25
                a++L++ L++ k + + Cs Cg +
  EHU00953.1  7 ARPLSRYLKDYKHSQTNCSHCGKV 30
                899******************975 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.048
                SS-CCCCS CS
        RecR 29 dlCaICsd 36
                 lC++Csd
  EHU00953.1 69 ALCRFCSD 76
                58****99 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.6e-05      0.12      15      26 .]      20      31 ..      18      31 .. 0.87
   2 ?   -3.8   0.3       3.9   9.9e+03      19      22 ..      71      74 ..      70      74 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  zf-ribbon_3 15 ddnvCpyCGtkl 26
                 ++++C +CG++l
   EHU00953.1 20 SQTNCSHCGKVL 31
                 699******987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.9
  zf-ribbon_3 19 CpyC 22
                 C  C
   EHU00953.1 71 CRFC 74
                 8888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1252.28
//
Query:       EHU00954.1  [L=328]
Description: D-cysteine desulfhydrase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-51  176.1   0.2    1.2e-51  175.9   0.2    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.2   6.5e-56   1.2e-51       3     294 .]      14     316 ..      12     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 6.5e-56
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGST..TSBTTHHHHHHHHHHHHTTTTTSEEEEEBS..SHHHHHHHHHHHHHT-EEEEEEETTS-....... CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnp..tgSfKdRgaeyllarlkegtgaktvveass..GNhgralAaaaallGlkvtivvpadas....... 90 
                 l   pTPl  lprls+ lg ++f+K+++ +p  +g++K+R++e+l a++ ++ ga+++++a++  +Nh r +Aa+aa+lGlk++ ++++          
  EHU00954.1  14 LLGAPTPLEFLPRLSDFLGRDIFIKRDDVTPlaLGGNKLRKLEFLAADALRE-GADVLLTAGAiqSNHVRQTAAVAAKLGLKCVALLENPIAtqsenyl 111
                 6778***************************9****************9999.9********999*********************8877774555555 PP

                 .HHHHHHHHHTT-EEEEECCHHHHHHHH...HHHHHHHSTTCEE--TTT.SHHHHHHHHTHHHHHHHHTTTTEE..EEEEE-SSSHHHHHHHHHHHHHS CS
        PALP  91 .pekvallrllGaevvevggdydeavaa...aaelaaegegaylvsqfd.nptviegygtiglEileqlggkpd..avvvpvGgGgliaGiaaglkerr 182
                  +++++ll+l+  +vv v+  +d a+++   a++l+a+g  +y ++ ++ n ++ +gy  +++Ei+ q  g++d  avvv+ G++g++aG+a gl +  
  EHU00954.1 112 tNGNRLLLELMDVDVVMVEALTDPAAQLaeqAERLEAQGFRPYTLPVGGsNALGALGYVECAQEIVHQSEGVVDfaAVVVASGSAGTHAGLAIGLEHLM 210
                 56****************99999999994455588889999999999998999*************99998888768********************** PP

                 TT-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-H.HHHHHHHHH.HHH CS
        PALP 183 pdvrvigvepegsdalarslragrrvtvpvsdtiadglavg..spselafelldrlvdeivtvsdeealeamrllarregivvep.ssaaalaal.klr 277
                 p+++++gv ++      r +     +++p+ d i ++la +  +++   + l d++ ++ ++ ++ee  ea++llar eg++++p ++++a+a+l +  
  EHU00954.1 211 PQTELVGVTVS------RQR----DEQLPKVDAIRQALASQlsVEAKAPVTLWDDYFGPRYGEPNEEGTEAIKLLARLEGLLLDPvYTGKAMAGLiDGI 299
                 ********665......333....23334445555555555544488888889********************************************** PP

                 HHHCCTTCEEEEEEE-B CS
        PALP 278 eagelkegdrvvviltg 294
                 ++++++++ + ++++tg
  EHU00954.1 300 SQNRFRREGPLLFVHTG 316
                 ****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2839.72
//
Query:       EHU00955.1  [L=266]
Description: periplasmic substrate-binding component of an ABC superfamily cystine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-72  244.1   0.5    1.5e-72  243.7   0.5    1.2  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    4.5e-10   39.7   0.1    1.2e-09   38.4   0.1    1.7  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
    0.00025   21.1   0.4     0.0027   17.7   0.0    2.2  2  NMT1             NMT1/THI5 like
  ------ inclusion threshold ------
      0.057   13.0   1.8        2.6    7.5   0.4    3.3  2  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
        0.4   10.8   1.4          7    6.9   0.1    2.7  3  COX6C            Cytochrome c oxidase subunit VIc


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.7   0.5   4.1e-76   1.5e-72       1     224 [.      43     261 ..      43     262 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.7 bits;  conditional E-value: 4.1e-76
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 lrvg +++ypPfs++de+g+ltGf+v++a+++ak +gvk  ++p++wd++++al+s+++D++i+++ti++eR++k+dFs+py  +g++ l+ kk+a   
  EHU00955.1  43 LRVGLEGTYPPFSFQDEKGKLTGFEVEFAQDLAKHMGVKAVLKPTKWDGMLAALDSKRIDVVINQVTISDERKKKYDFSTPYTISGVQALTLKKNA--- 138
                 79******************************************************************************************8654... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseL 198
                  si+ ++dL+gkkvgv  g+++e++l+ + k g++++++d+++  +q+L++grvda+++d+ ++ +lvkk  d  +v+ ++++s  e+++a+rkg+++L
  EHU00955.1 139 GSITRPEDLAGKKVGVGLGTNYEQWLRANVK-GVDVRTYDDDPTKYQDLRSGRVDAILVDRLAALDLVKKTSDTMAVA-GPAFSRLEAGVALRKGNEDL 235
                 6899999********************9776.**********************************************.******************** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 199 rkainkalaelkadgtlakisekWfg 224
                 +kain+a+ae+++dgtl+k+sekWfg
  EHU00955.1 236 LKAINQAIAEMQKDGTLKKLSEKWFG 261
                 *************************9 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.1   3.3e-13   1.2e-09      42     114 ..      63     136 ..      52     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.3e-13
                      HHT-EEEEEE-TT-----BET.TTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEESX CS
  Lig_chan-Glu_bd  42 klgfkYelklvedgkyGskke.kkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikkp 114
                       +gf+ e+++   +++G k   k ++w+Gm+  l +k++d+++ ++ti+ eR++  dF++p+  +g++ l+ k+
       EHU00955.1  63 LTGFEVEFAQDLAKHMGVKAVlKPTKWDGMLAALDSKRIDVVINQVTISDERKKKYDFSTPYTISGVQALTLKK 136
                      46888999999999999876514569*****************************************9998665 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.11     4e+02      87     145 ..      55     105 ..      54     123 .. 0.68
   2 !   17.7   0.0   7.5e-07    0.0027      74     145 ..     129     195 ..     124     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
                 SGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  87 spkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                 s++D kGk  g+   +f++ l k++  k+ ++p +      +g+ +  al ++++D++i
  EHU00955.1  55 SFQDEKGKLTGFEV-EFAQDLAKHMGVKAVLKPTKW-----DGMLA--ALDSKRIDVVI 105
                 67888888777777.777777777766666655554.....34444..78888888877 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 7.5e-07
                 -EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  74 lsglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                 +++l+ +k++g i++p+DL+Gk++g+  + + ++ l+a ++  g+   dv + + + t+ +++l +g+vDa++
  EHU00955.1 129 VQALTLKKNAGsITRPEDLAGKKVGVGLGTNYEQWLRANVK--GV---DVRTYDDDPTK-YQDLRSGRVDAIL 195
                 56788899999**************9887777777777664..55...66666665555.5799999999987 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.3   4.8e+03     151     174 ..       8      36 ..       4      45 .. 0.49
   2 ?    7.5   0.4   0.00074       2.6      19     174 ..      70     207 ..      67     264 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
                     HHHHTTSSSEEE.....EEHHHHHHHHHH CS
  Phosphonate-bd 151 lavlsgdadaaa.....vsadaledlvae 174
                     ++++ g   +a      v+++a+edl ++
      EHU00955.1   8 RQLVTGMMAVALvagvsVKTFAAEDLLQQ 36 
                     56666666666633344444555555444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00074
                     HHHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-E.EEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE-- CS
  Phosphonate-bd  19 ladyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqagv.eplatrvrsdGsasyrsviivradsdiqsledLkgktiafvs 112
                     +a+ L ++ Gv+  l+++   +++  al++ ++D++  +     + +++++  +p  ++       + +++ + ++   i++ edL+gk+++++ 
      EHU00955.1  70 FAQDLAKHMGVKAVLKPT-KWDGMLAALDSKRIDVVINQVTISDERKKKYDFsTPYTIS-------GVQALTLKKNAGSITRPEDLAGKKVGVGL 156
                     677777888888888887.4788888888888887764444443344443421222222.......22333333333345555555555555543 PP

                     TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH CS
  Phosphonate-bd 113 psStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvae 174
                          G+ + +++L  +a+++  d       ++ ++ ++ + sg++da  v+  a+ dlv++
      EHU00955.1 157 -----GTNY-EQWL--RANVKGVDV---RTYDDDPTKYQDLRSGRVDAILVDRLAALDLVKK 207
                     .....2222.2344..222222211...1234555555666666666666666666666555 PP

>> COX6C  Cytochrome c oxidase subunit VIc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.002         7      13      39 ..       4      31 ..       1      36 [. 0.84
   2 ?    1.9   0.0     0.067   2.4e+02      34      46 ..     107     119 ..      99     124 .. 0.84
   3 ?   -2.4   0.0       1.5   5.5e+03      56      68 ..     241     253 ..     239     254 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
       COX6C 13 krlkrhlv.vafvlslgvaaaykfavae 39
                ++++r+lv ++++++l++++++k++ ae
  EHU00955.1  4 SQIRRQLVtGMMAVALVAGVSVKTFAAE 31
                6788887637899************987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.067
       COX6C  34 kfavaepRKkaya 46 
                 ++++ ++RKk+y+
  EHU00955.1 107 QVTISDERKKKYD 119
                 67899*******5 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.5
       COX6C  56 kefeemrkaGlfq 68 
                 ++  em+k G ++
  EHU00955.1 241 QAIAEMQKDGTLK 253
                 56789****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1868.07
//
Query:       EHU00956.1  [L=222]
Description: putative membrane component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-23   82.5  12.6    3.8e-23   82.2  12.6    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2  12.6   2.1e-27   3.8e-23       1     183 [.      33     214 ..      29     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 2.1e-27
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   g++lG+++a   l+r +++++l r+++ +++++P ++ ++++++ +  ++i  + i +++i l l +a+y+    r+a+ +++++++eaa   G+++
    EHU00956.1  33 GLILGFVLAlmrLSRFWPISWLARIYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYASESLRGAIAAIERGQWEAAASIGMTP 129
                   788999999*9999*****************************999999888888888*************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   wq++r+v+lP+a++++++ l+++f++l+++++l+ ++     +  l+ +a+l+   ++  ++++la+ ++++++ +v+ +lq  l+  v
    EHU00956.1 130 WQTLRRVILPQAARTALPPLGNSFISLVKDTSLAATIQ----VPELFRQAQLITSRTLEVFTMYLAASVIYWIMATVLSALQNRLEAHV 214
                   **************************************....***************9999***********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1637.73
//
Query:       EHU00957.1  [L=250]
Description: putative ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-34  118.9   0.0    3.2e-34  118.4   0.0    1.2  1  ABC_tran     ABC transporter
      8e-13   48.9   0.0    6.2e-06   26.2   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.1e-09   35.9   0.0    1.7e-08   34.1   0.0    1.7  1  SMC_N        RecF/RecN/SMC N terminal domain
    1.1e-06   29.0   0.1    7.9e-06   26.2   0.1    2.0  1  AAA_22       AAA domain
    2.4e-05   24.0   0.0    4.4e-05   23.1   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00013   22.4   0.9    0.00057   20.3   0.9    2.0  1  AAA_16       AAA ATPase domain
    0.00015   22.3   0.1    0.00032   21.2   0.1    1.4  1  AAA_23       AAA domain
    0.00016   21.7   0.0     0.0016   18.4   0.0    2.0  1  ATPase_2     ATPase domain predominantly from Archaea
     0.0002   20.3   0.2       0.54    9.0   0.0    2.8  2  ABC_ATPase   Predicted ATPase of the ABC class
    0.00025   19.8   0.0      0.046   12.4   0.0    2.1  2  AAA_13       AAA domain
    0.00049   19.9   0.0       0.19   11.4   0.1    2.1  2  AAA_15       AAA ATPase domain
     0.0039   17.4   0.2      0.016   15.4   0.2    2.1  1  AAA_33       AAA domain
     0.0049   16.8   0.0     0.0099   15.8   0.0    1.5  1  NACHT        NACHT domain
     0.0065   16.2   0.1      0.014   15.1   0.1    1.7  1  AAA_30       AAA domain
     0.0089   15.1   0.2       0.02   14.0   0.0    1.6  2  T2SSE        Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.019   14.8   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
      0.011   16.1   0.1       0.77   10.2   0.0    2.4  2  AAA          ATPase family associated with various cellular a
      0.013   15.1   0.1      0.027   14.1   0.0    1.6  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.015   15.0   0.0      0.035   13.8   0.0    1.6  2  AAA_24       AAA domain
      0.015   15.8   0.0      0.026   15.1   0.0    1.5  1  AAA_18       AAA domain
      0.015   14.5   0.0      0.041   13.1   0.0    1.6  2  NB-ARC       NB-ARC domain
      0.017   15.0   0.0       0.14   12.1   0.0    2.1  2  MobB         Molybdopterin guanine dinucleotide synthesis pro
      0.019   15.2   0.1      0.053   13.8   0.0    1.9  2  AAA_28       AAA domain
      0.028   13.8   0.0          4    6.8   0.0    2.5  2  TniB         Bacterial TniB protein
      0.034   13.7   0.3       0.34   10.5   0.0    2.2  2  AAA_25       AAA domain
      0.051   13.6   0.0       0.33   11.0   0.0    2.1  2  AAA_14       AAA domain
      0.074   13.3   0.1        1.1    9.5   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.084   12.3   0.0       0.43   10.0   0.0    1.9  2  Pox_A32      Poxvirus A32 protein
      0.095   13.0   0.1       0.28   11.5   0.0    1.7  2  AAA_19       AAA domain
      0.097   12.4   0.0       0.16   11.7   0.0    1.4  1  PRK          Phosphoribulokinase / Uridine kinase family
       0.13   12.0   0.0       0.24   11.1   0.0    1.5  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.15   12.1   0.3       0.39   10.8   0.2    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
       0.19   11.7   0.0       0.32   10.9   0.0    1.3  1  Rad17        Rad17 P-loop domain
       0.19   10.8   0.0       0.37    9.9   0.0    1.3  1  G-alpha      G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   6.1e-37   3.2e-34       1     137 []      19     173 ..      19     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 6.1e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke........qeleslrkeigvlpqepqlfpeltvren............ 79 
                 l+ ++l++ +ge+vai+G++G+GK+tLl+ +  l+ p++G+i++ +  ++         ++ ++lr+++g+++q+ +lfp+ +v en            
  EHU00957.1  19 LHGIDLDVAPGEIVAIIGPSGSGKTTLLRSINLLEVPEAGRIKVGDITIDAslginkqkEQVRQLRQQVGFVFQNFNLFPHRSVLENiiegpvivkget 117
                 6789**************************************88888888888888888999*********************************9987 PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   ++ +++  +l+k+gl++++d+      + LSgGq+qrva+aral+ +p+++l+DEpt+
  EHU00957.1 118 kaDAVARARGLLEKVGLQGKEDSYP----RRLSGGQQQRVAIARALAMRPEVILFDEPTS 173
                 6666666999999999999777666....*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     5e-07   0.00026       1      63 [.      31      74 ..      31     102 .. 0.74
   2 !   26.2   0.0   1.2e-08   6.2e-06     235     298 ..     143     203 ..     116     207 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeie 63
                + ++iGp gsGK++LL+ + ll                   +   ++++  +d++i++ ++i+
  EHU00957.1 31 IVAIIGPSGSGKTTLLRSINLL-------------------EVPEAGRIKVGDITIDASLGIN 74
                579****************999...................3444444444444444444444 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.2e-08
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 r lS G+++  a++ al+ ++    ++l+DEp + L+P+l+ ++l  +++l++++   +++TH 
  EHU00957.1 143 RRLSGGQQQRVAIARALAMRP---EVILFDEPTSALDPELVGEVLNTIRALAQEKRTMVIVTHE 203
                 568999999989999999999...9****************************99999****95 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   3.3e-11   1.7e-08      25     203 ..      30     208 ..       3     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.3e-11
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCC...CC.C--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrsekls...dl.ihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevt 119
                 ++ ai+Gp GSGK+ ll +i  +L   +a  ++  +++   +l i+k+ke+ ++ + +v  +f+n +   + +  e  i+  v+ kge++     +   
  EHU00957.1  30 EIVAIIGPSGSGKTTLLRSI-NLLEVPEAGRIKVGDITidaSLgINKQKEQVRQLRQQVGFVFQNFNLFPHRSVLENIIEGPVIVKGETKADAVARARG 127
                 5789****************.7888888888888766422233366678888888999999****9999888888999999999999977766655555 PP

                 HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE.-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N 120 kkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivi.slreemle 203
                   e   l  +++ ++  LSgG+++ va+a  +A+   +p+ + l+De  +aLD + v +v + +++  ++   +vi +++  + +
  EHU00957.1 128 LLEKVGLQGKEDSYPRRLSGGQQQRVAIARALAM---RPE-VILFDEPTSALDPELVGEVLNTIRALAQEKRTMVIvTHEMSFAR 208
                 5555666667777777*************99886...455.679*********************98887666655055444433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   1.5e-08   7.9e-06       6     127 ..      30     200 ..      27     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.5e-08
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevv......fvtlpsst..sskdllrel 60 
                  i++++G+sG+GKTtllr +    + ea   +                                    ++++v+       v ++++t  +    +r l
  EHU00957.1  30 EIVAIIGPSGSGKTTLLRSINLLEVPEAGRIKvgditidaslginkqkeqvrqlrqqvgfvfqnfnlfPHRSVLeniiegPVIVKGETkaDAVARARGL 128
                 5899******************98666555559*******************99999999999999997777778888887888888833455558899 PP

      AAA_22  61 lralglelka..erlsseellealeqalrarav.ielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliL 127
                 l+++gl++k+  ++ +++   ++    +ra a+ +e+++ DE    l+ +   e+l+++r l+   +k + +i+
  EHU00957.1 129 LEKVGLQGKEdsYPRRLSGGQQQRVAIARALAMrPEVILFDEPTSaLDpElvGEVLNTIRALAQ--EKRTMVIV 200
                 999999999966333333333333333333333778*******999976377**********99..88777765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.4e-08   4.4e-05      13      50 ..      20      57 ..      10      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.4e-08
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +g ++++ + +++ ++GpsGsGK+Tll +i+ l vp+ 
  EHU00957.1 20 HGIDLDVAPGEIVAIIGPSGSGKTTLLRSINLLEVPEA 57
                45677888888****************99999988876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.9   1.1e-06   0.00057      24     107 ..      28     171 ..      16     241 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.1e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd..............................ggiflrgkcdqlesaipysalaqalareellrqlldeaes 91 
                 p e+v ++G+sG+GK++l+r++   le                                 + f+ +++  +    ++s+l ++++   ++ + +++a++
  EHU00957.1  28 PgEIVAIIGPSGSGKTTLLRSINL-LEVPeagrikvgditidaslginkqkeqvrqlrqQVGFVFQNFNLF---PHRSVLENIIEG-PVIVKGETKADA 121
                 3389****************9983.3333346666666666666666666666666665455555665555...333445555533.555555555333 PP

      AAA_16  92 aeleawrekleeala.....................................a 107
                   ++++r  l+e ++                                     +
  EHU00957.1 122 --VARARG-LLEKVGlqgkedsyprrlsggqqqrvaiaralamrpevilfdeP 171
                 ..222222.22222234455555555554444444444444444444444443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   6.2e-07   0.00032      15      48 ..      22      58 ..      10      95 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.2e-07
      AAA_23 15 idF...skgltlItGpNGaGKTTildAiklaLygetp 48
                id+      +++I+Gp G+GKTT+l+ i l    e++
  EHU00957.1 22 IDLdvaPGEIVAIIGPSGSGKTTLLRSINLLEVPEAG 58
                55555333699*****************986555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.1e-06    0.0016      18      83 ..      27     126 ..      23     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.1e-06
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekal.................................. 82 
                  p ei+ i Gp gsGKt+Ll+ +i+ le  +  +i + ++  +++  +++    +e++++l++++                                  
  EHU00957.1  27 APGEIVAIIGPSGSGKTTLLR-SINLLEVPEAGRIKVGDITIDASLGINKQ---KEQVRQLRQQVgfvfqnfnlfphrsvleniiegpvivkgetkada 121
                 5789***************98.57888888999999999998888888887...788888888887777777777776666555555555555555444 PP

    ATPase_2  83 ....g 83 
                      
  EHU00957.1 122 varaR 126
                 44431 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.002       1.1     244     265 ..      28      50 ..       8      59 .. 0.86
   2 !    9.0   0.0     0.001      0.54     324     414 ..     146     220 ..     135     248 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
                 SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAle 265
                  G +++I+G+   GK+TLL++++
  EHU00957.1  28 PGeIVAIIGPSGSGKTTLLRSIN 50 
                 45599***************996 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETT CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeey 414
                 SG   q ++i++al ++ +++L+DE tsA           elv +  ++i++l++  r +        ++v+  ++   dvAd+ i m++ 
  EHU00957.1 146 SGGQQQRVAIARALAMRPEVILFDEPTSALD--------PELVGEVLNTIRALAQEKRTM--------VIVTHEMSFARDVADRAIFMDQG 220
                 99999***********************953........455544444444444444333........66666666666666666666665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0092       4.8      21      53 ..      34      65 ..      24     135 .. 0.70
   2 !   12.4   0.0   8.7e-05     0.046     526     580 ..     162     213 ..     153     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0092
      AAA_13 21 iYGwNGaGKTtLSrllrslelgetepkfangsi 53
                i G  G+GKTtL r ++ le  e+  + + g i
  EHU00957.1 34 IIGPSGSGKTTLLRSINLLEVPEAG-RIKVGDI 65
                77999************99865533.4444555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.7e-05
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                   +++ +D P S LD + +  v + i++ +   ++ + + i TH ++f + v ++
  EHU00957.1 162 RPEVILFDEPTSALDPELVGEVLNTIRALA---QEKRTMVIVTHEMSFARDVADR 213
                 5789*************************9...99999************99865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00035      0.19      25      46 ..      31      52 ..      20      78 .. 0.84
   2 !    6.9   0.0    0.0084       4.4     268     364 ..      88     202 ..      57     207 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
      AAA_15 25 ltvliGkNnsGKSsilealdlF 46
                +  +iG+ +sGK+++l+ ++l+
  EHU00957.1 31 IVAIIGPSGSGKTTLLRSINLL 52
                899****************987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0084
      AAA_15 268 idkikkfnykgkkneeieik............................ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHp 338
                  + +++fn ++  +++ +i                              +e+++  + + G+q+ + ++   + a++         ++l++EP   L p
  EHU00957.1  88 GFVFQNFNLFPHRSVLENIIegpvivkgetkadavarargllekvglqGKEDSYPRRLSGGQQQRVAIAR--ALAMRP-------EVILFDEPTSALDP 177
                 4445555555555555555567777777777777777778888888888888888999999999887764..444555.......67************ PP

      AAA_15 339 qaqkvlikllkelandnktQviitTH 364
                 ++  ++ ++++ la++++   +i TH
  EHU00957.1 178 ELVGEVLNTIRALAQEKR-TMVIVTH 202
                 *****************9.5666667 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2     3e-05     0.016       2      19 ..      32      49 ..      31     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-05
      AAA_33  2 vllvGlpGsGKstlaerl 19
                v ++G++GsGK+tl++++
  EHU00957.1 32 VAIIGPSGSGKTTLLRSI 49
                789***********9974 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-05    0.0099       2      20 ..      31      49 ..      30      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-05
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                +v++ G++GsGKTtLl+++
  EHU00957.1 31 IVAIIGPSGSGKTTLLRSI 49
                689**************99 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.6e-05     0.014      19      74 ..      30      95 ..      26     199 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.g.........grviglAptgkaAkvLaeelgieastia 74
                 ++++ Gp G+GKtt+l++++ +   + g            +g+  ++++ ++L++++g+  ++ +
  EHU00957.1 30 EIVAIIGPSGSGKTTLLRSINLLEVPEaGrikvgditiDASLGINKQKEQVRQLRQQVGFVFQNFN 95
                47899**************96554444245666565555555666666666667766666555555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.8e-05      0.02     123     182 ..      23      86 ..       3      96 .. 0.73
   2 ?   -2.0   0.0       2.9   1.5e+03      31      62 ..     180     210 ..     152     224 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
       T2SSE 123 rkavrerglilvsGgTgsGKttll.yallkeinksderi....vtvEDpvEiqleganqvqlnak 182
                    v+   ++ + G+ gsGKttll  + l e+++   ri    +t+  +  i+ +++++ ql+++
  EHU00957.1  23 DLDVAPGEIVAIIGPSGSGKTTLLrSINLLEVPEA-GRIkvgdITIDASLGINKQKEQVRQLRQQ 86 
                 5555666778899***********66779999999.55544557777777777777777777766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
       T2SSE  31 vdgielreveelekaalerlisriaalakldi 62 
                 v++ +l++++ l +++ +++i +  ++  +d+
  EHU00957.1 180 VGE-VLNTIRALAQEKRTMVIVTHEMSFARDV 210
                 344.4555555555555555555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.7e-05     0.019      99     121 ..      29      51 ..       2      87 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-05
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  +++++++G+SG GK+tL+ +++ 
   EHU00957.1  29 GEIVAIIGPSGSGKTTLLRSINL 51 
                  4999*************987754 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0015      0.77       2      18 ..      33      49 ..      32      93 .. 0.75
   2 ?    3.8   0.0      0.14        71      47      98 ..     150     192 ..     117     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0015
                EEESSTTSSHHHHHHHH CS
         AAA  2 llyGppGtGKTllakav 18
                 ++Gp G GKT+l +++
  EHU00957.1 33 AIIGPSGSGKTTLLRSI 49
                589***********998 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.14
                 HHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  47 relfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 ++ ++ a++ a +p ++++DE  +    +          +v + l+ +  + +
  EHU00957.1 150 QQRVAIARALAmRPEVILFDEPTSALDPE----------LVGEVLNTIRALAQ 192
                 44455556666669999999977666555..........45555555555544 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     5e-05     0.027       3      31 ..      32      62 ..      30      87 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-05
                EEEEESTTCCHHHHHHHHH..CT--SS-EEE CS
        cobW  3 tvltGflGsGKTtLlnhll..enraglklav 31
                + + G+ GsGKTtLl+++   e  +  ++ v
  EHU00957.1 32 VAIIGPSGSGKTTLLRSINllEVPEAGRIKV 62
                6799************886334444444443 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.7e-05     0.035       5      25 ..      32      50 ..      29      91 .. 0.81
   2 ?   -2.5   0.0       6.9   3.6e+03     115     190 ..     187     204 ..     177     210 .. 0.45

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.7e-05
      AAA_24  5 iliyGpsgiGKTtlakelgpk 25
                ++i+Gpsg+GKTtl++++  +
  EHU00957.1 32 VAIIGPSGSGKTTLLRSI--N 50
                79*************998..4 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.9
      AAA_24 115 lkklqelrknvifiahektrkdedpegeakytrlepklgkktanelkeevDlvlranlkredkvgervlktskses 190
                 +++l                                                          ++ +r++   ++e+
  EHU00957.1 187 IRAL----------------------------------------------------------AQEKRTMVIVTHEM 204
                 3332..........................................................23344444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     5e-05     0.026       1      44 [.      32      78 ..      32     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf....gvnlrdvakenglllevdpe 44
                +++ G++G+GKttl + + ++l++     ++++d+  +  l +  ++e
  EHU00957.1 32 VAIIGPSGSGKTTLLRSI-NLLEVpeagRIKVGDITIDASLGINKQKE 78
                689*************99.44456777777777777776666666666 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.8e-05     0.041      21      41 ..      30      50 ..      22      56 .. 0.90
   2 ?   -2.0   0.0       3.1   1.6e+03      95     117 ..     154     176 ..     126     224 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.8e-05
                EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqil 41
                 +va+ G  G+GKttl+++i+
  EHU00957.1 30 EIVAIIGPSGSGKTTLLRSIN 50
                49****************996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
                 HHHHHCCCTTEEEEEEEE-SHHH CS
      NB-ARC  95 klvrlLltkrfllvlDDVweeed 117
                  + r+L  +  ++++D      d
  EHU00957.1 154 AIARALAMRPEVILFDEPTSALD 176
                 55666666666666664333333 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00026      0.14       1      19 [.      31      49 ..      31      71 .. 0.72
   2 ?    0.3   0.0       1.2   6.2e+02      47      76 ..     138     170 ..     129     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00026
        MobB  1 vlgivgksgsGKTtLlekl 19
                +++i+g sgsGKTtLl  +
  EHU00957.1 31 IVAIIGPSGSGKTTLLRSI 49
                689*************853 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.2
        MobB  47 kDsyrhrkAGAkevlvaskerlalikel...ee 76 
                  Dsy  r +G ++  va  + la+  e+   +e
  EHU00957.1 138 EDSYPRRLSGGQQQRVAIARALAMRPEVilfDE 170
                 59***********99999999999877655544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0    0.0001     0.053       2      20 ..      32      50 ..      31      87 .. 0.84
   2 ?   -1.6   0.0       5.2   2.7e+03      15      15 ..     186     186 ..     140     223 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.0001
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++i+G++++GKTtll+ ++
  EHU00957.1 32 VAIIGPSGSGKTTLLRSIN 50
                89*************9875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.2
      AAA_28  15 l 15 
                 +
  EHU00957.1 186 T 186
                 1 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.04        21      38      54 ..      32      48 ..      27      61 .. 0.86
   2 ?    6.8   0.0    0.0076         4     105     158 ..     148     199 ..     102     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.04
        TniB 38 lllvGdsnnGKtmivek 54
                + ++G+s  GKt+++++
  EHU00957.1 32 VAIIGPSGSGKTTLLRS 48
                689**********9986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0076
        TniB 105 skleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipiv 158
                  ++++ +++   +++++v+++DE  ++l    +   e+ln+++ L +e +  ++
  EHU00957.1 148 GQQQRVAIARALAMRPEVILFDEPTSAL--DPELVGEVLNTIRALAQEKRTMVI 199
                 33444444445567788********999..788899*********999776555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00064      0.34      31      50 ..      27      46 ..      16      51 .. 0.85
   2 ?    1.1   0.1      0.48   2.5e+02     163     187 ..     178     202 ..     111     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00064
      AAA_25 31 pagelallaGapgtGKttla 50
                + ge+++++G++g+GKttl+
  EHU00957.1 27 APGEIVAIIGPSGSGKTTLL 46
                5699**************98 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.48
      AAA_25 163 sdvgalvealeriarrtgaavllvh 187
                 + vg++++ ++ +a++++  v+++h
  EHU00957.1 178 ELVGEVLNTIRALAQEKRTMVIVTH 202
                 3357777777777777777777776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00062      0.33       3      22 ..      30      49 ..      28      94 .. 0.80
   2 ?    0.1   0.0       1.5   7.7e+02      64      98 ..     162     201 ..     139     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00062
      AAA_14  3 kilvitGaRrvGKTtllkql 22
                +i++i G+  +GKTtll+ +
  EHU00957.1 30 EIVAIIGPSGSGKTTLLRSI 49
                799*************9987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
      AAA_14  64 kktylflDEiqev......pewekalkslvdegknldvivt 98 
                 + +++++DE   +       e+ ++++ l +e+ +  vivt
  EHU00957.1 162 RPEVILFDEPTSAldpelvGEVLNTIRALAQEK-RTMVIVT 201
                 567888999877766655566666666666666.6667666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0021       1.1      62      89 ..     161     188 ..     129     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0021
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                  +++++++DE  s lD+e + ++l++++
  EHU00957.1 161 MRPEVILFDEPTSALDPELVGEVLNTIR 188
                 25789*****************999886 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00082      0.43      16      33 ..      32      49 ..      26      54 .. 0.89
   2 ?   -0.5   0.0       1.3   6.8e+02     180     220 ..     182     223 ..     173     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00082
     Pox_A32 16 lalvGgsGsGktvyLlsL 33
                +a++G sGsGkt+ L+s+
  EHU00957.1 32 VAIIGPSGSGKTTLLRSI 49
                68*************985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
     Pox_A32 180 kvlnilrsaeqkkrkvliiedsv.fsegeariCldsaDesvi 220
                 +vln +r+  q+kr ++i+   + f+ + a   + ++  +v+
  EHU00957.1 182 EVLNTIRALAQEKRTMVIVTHEMsFARDVADRAIFMDQGRVV 223
                 678899999999998888765442555544444444444555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00052      0.28       9      30 ..      28      49 ..      23      80 .. 0.86
   2 ?   -1.7   0.0       6.4   3.4e+03     105     126 ..     165     188 ..     142     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00052
      AAA_19  9 kekvllvtaGpGtGKTrvlkhi 30
                + ++++++++ G+GKT++l+ i
  EHU00957.1 28 PGEIVAIIGPSGSGKTTLLRSI 49
                67899*************9976 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 6.4
      AAA_19 105 llivDE.fqdvd.elqyrLlkall 126
                 +++ DE ++ +d el  ++l+++ 
  EHU00957.1 165 VILFDEpTSALDpELVGEVLNTIR 188
                 556666445556555555554443 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031      0.16       1      21 [.      31      51 ..      31     105 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
         PRK  1 vIgvagsSGaGkttvarklek 21
                ++++ g+SG+Gktt+ r ++ 
  EHU00957.1 31 IVAIIGPSGSGKTTLLRSINL 51
                789*************99863 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00046      0.24       4      25 ..      32      53 ..      29      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00046
   PduV-EutP  4 illiGkvgsGKttLtqalkgee 25
                + +iG++gsGKttL ++++  e
  EHU00957.1 32 VAIIGPSGSGKTTLLRSINLLE 53
                779************9998655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00074      0.39       2      20 ..      32      50 ..      31      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00074
                EEEEESTTSSHHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinalt 20
                vai+G + +GK+tL++++ 
  EHU00957.1 32 VAIIGPSGSGKTTLLRSIN 50
                89**************984 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00061      0.32      33      65 ..      17      49 ..       8      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00061
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvL 65
                + l+   L+ ++ +i+ i GPsG gk+t ++ +
  EHU00957.1 17 TVLHGIDLDVAPGEIVAIIGPSGSGKTTLLRSI 49
                66777778899999**************99876 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0007      0.37      27      50 ..      33      56 ..      27      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0007
                EEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 27 lllGqseSGKsTilkqlkllykkg 50
                 ++G s+SGK+T+l+++ ll+ ++
  EHU00957.1 33 AIIGPSGSGKTTLLRSINLLEVPE 56
                689***************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 1735.40
//
Query:       EHU00958.1  [L=360]
Description: acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-16   60.6  45.7    2.3e-16   59.8  45.8    1.4  1  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8  45.8   1.3e-20   2.3e-16       2     332 ..       9     328 ..       8     336 .. 0.70

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.3e-20
                    xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHali..ayspdagrgspiqasqssqi..aflggfgvplFFllSGfflaamlyrrrglsklikrRilrlliplliwllli 93 
                     +++ l+g +illVv++Ha+i  + ++ ++ +++ ++ q ++     l++ ++p FF++SG++ a     ++++ + + +++ ++++ +l+w +++
     EHU00958.1   9 LWINTLKGGCILLVVLHHAIIttFAPSLHHLTAGLLPAQGWVAfnTWLSPLRMPAFFFVSGLLAA-NAVVKKSWQEVFTKKFSNIVYLYLLWGVIQ 103
                    69*******************985555555555666666655567899****************8.****************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  94 illialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhelfgpatsvg 189
                    +l+i+++ +h     s +   + +   l f  +    +  lW+L+al +++l++ l+           +ll+ ++++ +++ f ++ + +   sv 
     EHU00958.1 104 WLSIHYISTHLGERLSSSKNAAYADSPLEFIKLLMLSMTSLWYLYALAGFFLVTKLFHQQK------RVLLAAAIAANYAAQFNLIPG-WGLASVA 192
                    *****99999877666666655443568888889999999*************87773333......334444444444555555444.2233333 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 190 llplpsvlallfflfGalladaddrdrnlsrglkis.lllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfalpsrsafk 284
                    ++        l+fl+G++++    + + l  +++++  +++l+++a    +++ +                ++ ++  +++++l+ f++++++  +
     EHU00958.1 193 QN-------SLYFLLGVFFSARLIELSALKGRHWLWlGAIALVGIAHHAGGIYKNP---------------FYSLLTIVFGIVLCRFLNAHFRMTW 266
                    33.......9******9987777777666554444404444444444444444444...............5556666666666666666666555 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxx RF
  Acyl_transf_3 285 llrylgkiSygiYliHlpllmllqkllrdwgln...............lgevlllvlllvvsv 332
                     l+ +g++++ iY++H +++ ll+   +  +l+               l++v+ + +++++s+
     EHU00958.1 267 -LNAIGRNTLQIYVLHRIFIELLGLSAITLALHfgwfgnagfswawalLMPVTGVAVCTLLSL 328
                    .***************99999999888888444455566433334344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2630.61
//
Query:       EHU00959.1  [L=391]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-20   74.1   0.2    2.5e-20   72.9   0.0    1.6  2  Phage_integrase  Phage integrase family
    6.3e-20   71.3   0.1    1.4e-19   70.2   0.1    1.7  1  Arm-DNA-bind_3   Arm DNA-binding domain
     0.0028   17.9   0.1     0.0086   16.3   0.1    1.9  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   3.4e+03      96     121 ..     127     155 ..      88     171 .. 0.55
   2 !   72.9   0.0   4.3e-24   2.5e-20       3     170 ..     204     367 ..     202     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.57
                      BSSBET...TSSB--HHHHHHHHHHHHHH CS
  Phage_integrase  96 llfask...rgkplsrqtvrkafkravee 121
                      ++f+s    + +++++  + k++++++++
       EHU00959.1 127 VVFPSIgklPVREINSHHILKILQETAKR 155
                      45555533333333444444443333333 PP

  == domain 2  score: 72.9 bits;  conditional E-value: 4.3e-24
                      HHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   3 ltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      l  +++++ll+  ++   +++    + l++ t +R  E+ + +++++dl+n  ++++++++K ++e+++pl+++a+++l++l + +      ++
       EHU00959.1 204 LNTKQISKLLSCFDNsRGSYQVNYCMWLMWWTLARPTEVTEAEWEEFDLDNALWIIPATRMKARREHVIPLPSQAVNMLRTLQGLT----GHRQ 293
                      7889********99955555555568899****************************************************99999....999* PP

                      BSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase  96 llfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthva 170
                       +f+ +  +  p+++ ++r+ +k++    g     +pH  R + +t+L+e g+ +++++  l+H++ + + ++Y+h++
       EHU00959.1 294 HIFPGRdnPLGPMTSHSLRQLLKSLSWS-G---TYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNNVrRTYNHAT 367
                      ******5566677777777777776665.4...559**********************************99****86 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   2.4e-23   1.4e-19       1      72 [.       2      85 ..       2      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 2.4e-23
  Arm-DNA-bind_3  1 LTdkaikaladsdkklpr.d...GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekk 72
                    LTd++++++  ++k l+r     GL+l+v+psG+k +++r++         lG+ypav+laeAR k++++r+++a+Gi+Pa +++
      EHU00959.1  2 LTDTQCRTARSKEK-LYRlNdfnGLYLEVKPSGKKAWRYRFKlngkssmfaLGEYPAVKLAEARVKCEQARKQVADGINPALARQ 85
                    8*******664444.444337***************************9877*****************************9997 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.4e-06    0.0086       1      55 [.      98     150 ..      98     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.4e-06
                      ..HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHHHHH CS
  Phage_int_SAM_3   1 tFsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadiqkfqn 55 
                      tF+  ++eWl++  +++ e T  ++  ++++ + P +g++++ +I++ +i k  +
       EHU00959.1  98 TFELIAKEWLQM--KDWAEITKTRRLDMLERVVFPSIGKLPVREINSHHILKILQ 150
                      899999******..78*********************************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3027.11
//
Query:       EHU00960.1  [L=363]
Description: putative GTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-39  134.3   0.3    2.6e-39  133.3   0.3    1.6  1  YchF-GTPase_C  Protein of unknown function (DUF933)
    7.3e-22   77.6   0.0    1.5e-21   76.6   0.0    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
    6.8e-09   35.4   0.0    3.1e-08   33.3   0.0    2.0  2  FeoB_N         Ferrous iron transport protein B
     0.0062   16.6   0.2       0.22   11.6   0.1    2.7  2  TGS            TGS domain
  ------ inclusion threshold ------
      0.076   13.6   0.1       0.64   10.6   0.0    2.2  2  AAA_18         AAA domain


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.3   7.3e-43   2.6e-39       1      84 []     279     362 ..     279     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 7.3e-43
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    L+t+fTaG kevraWti  g+tapqaAg+iH+DfekgFira++i++ed++++++e+ akeagk+r+egk+y+v+dgD+++f fN
     EHU00960.1 279 LQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTIAFEDFITYKGEQGAKEAGKMRSEGKEYIVKDGDVMNFLFN 362
                    89********************************************************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   4.1e-25   1.5e-21       2      90 ..       5     119 ..       4     150 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 4.1e-25
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE...ETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk...lkgke.................ielvDtpGliegaseekglgkaflalee.adli 79 
                 ++ivG pNvGKStL+nalt++  +++++p++T+++n+g v    l   +                 +e+vD++Gl++gas+++glg++fl +++ +++i
  EHU00960.1   5 CGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPmpdL---RldqlseivkpqrvvpttMEFVDIAGLVKGASKGEGLGNQFLTNIReTEAI 100
                 79************************************9984441...134455566666666666************************988779*** PP

                 EEEEETT........TTCS CS
    MMR_HSR1  80 llvvdas........eekl 90 
                  +vv++         ++k+
  EHU00960.1 101 GHVVRCFendniihvNNKV 119
                 *****99643333332223 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   8.6e-12   3.1e-08       2      43 ..       4      45 ..       3      55 .. 0.90
   2 ?   -1.0   0.0      0.31   1.1e+03     126     154 ..     221     249 ..     166     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 8.6e-12
                EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklk 43
                ++ +vG pnvGk+tlfnalt+a  + +N+p  t+e ++g + 
  EHU00960.1  4 KCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVP 45
                5679********************************999876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
                 -HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N 126 dlkkLsekLgvpvvktsakkkegieellk 154
                  ++++++k g  vv+++a+ +++i el +
  EHU00960.1 221 KVREIAAKEGSVVVPVCASVESDIAELED 249
                 45667777788899999999999998875 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.071   2.5e+02       7      32 ..     221     246 ..     217     247 .. 0.82
   2 !   11.6   0.1   6.2e-05      0.22      13      38 ..     295     320 ..     284     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.071
                 TSSEEEEETTB-HHHHHHHHSTTHHH CS
         TGS   7 dGkvpdlprgatveDfAykIhrslak 32 
                 + +++  ++g+ v+ ++ ++ +++a+
  EHU00960.1 221 KVREIAAKEGSVVVPVCASVESDIAE 246
                 455566899**************986 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.2e-05
                 EETTB-HHHHHHHHSTTHHHHEEEEE CS
         TGS  13 lprgatveDfAykIhrslakkfiyAl 38 
                 +p gat+ ++A kIh+++ k fi A+
  EHU00960.1 295 IPVGATAPQAAGKIHTDFEKGFIRAQ 320
                 899*******************9886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.64       3      22 ..       7      26 ..       6      66 .. 0.82
   2 ?    0.1   0.1      0.32   1.1e+03      45      91 ..     136     177 ..      92     201 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
      AAA_18  3 ltGtpGvGKttlakeLskrl 22
                + G p vGK+tl ++L k +
  EHU00960.1  7 IVGLPNVGKSTLFNALTKAG 26
                89**************9873 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
      AAA_18  45 aldeskrldedkldklldaleenss...aleegknlvidghlaeleseaa 91 
                 +ld ++r+ + +++k+        +   + ++++   ++ +l +le + +
  EHU00960.1 136 DLDTCERALQRVQKKA--------KggdKDAKAEQAALEKCLPHLENAGM 177
                 2333333333333333........24444556677788888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2689.66
//
Query:       EHU00961.1  [L=195]
Description: peptidyl-tRNA hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-56  189.7   0.0    4.6e-56  189.4   0.0    1.0  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.0   2.6e-60   4.6e-56       1     170 [.       6     188 ..       6     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 189.4 bits;  conditional E-value: 2.6e-60
                      EEEE---SSTCCTTCGGGHHHHHHHHHHHH......TCEEEE..........EETTEEEEEEEESS-GGGHHHHHHHHHHHCT--..GEEEEEE CS
  Pept_tRNA_hydro   1 livGLGNpgkeYektRHNvGflvvdelakk......aevaeg..........kiegekvlllkPqtymNlsGeavkellkfykieseeilvvhD 78 
                      livGL Npg+eY+ tRHN+G +++d la++      +    +           ++ge+v ll P+t+mNlsG+av+++++fy+i++eeilv hD
       EHU00961.1   6 LIVGLANPGAEYAATRHNAGAWYLDLLAERhnqslkE----EakffgytarlALAGEDVRLLVPTTFMNLSGKAVAAMATFYRIAPEEILVAHD 95 
                      8***************************996655540....155556666669***************************************** PP

                      ETTSSTTEEEEEESS--TT-HHHHHHHHHHT-S-.SEEEEEEE---ST-CGGHHHHCTSB-HHHHHC.HHHHHHHHHHCHHHHHHHTSCCHCCC CS
  Pept_tRNA_hydro  79 dldlplgkirlkkkgssgghnGlksiikklgtek.fvRlriGIgrpekakkkvadyVLskfskeeek.leevlekaaealeellkeeleaamnk 170
                      +ldlp+g +++k++g++gghnGlk+ii+klg+++ f+RlriGIg+p + ++kv+ +VL+k +++e+k  ++++++aa+++e +lke+  +amn+
       EHU00961.1  96 ELDLPPGIAKFKQGGGHGGHNGLKDIISKLGNNNnFHRLRIGIGHPGD-RNKVTGFVLGKPPASEQKlCDDAIDEAARCTELWLKEDRIKAMNR 188
                      ******************************99877***********86.767**********9998879***************9875566765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1555.28
//
Query:       EHU00962.1  [L=91]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-41  138.1   0.2    1.1e-40  137.9   0.2    1.0  1  DUF2583   Protein of unknown function (DUF2583)
  ------ inclusion threshold ------
      0.057   13.6   1.5      0.077   13.1   1.5    1.3  1  SdpI      SdpI/YhfL protein family
      0.083   12.8   0.6        0.1   12.5   0.6    1.0  1  Fig1      Ca2+ regulator and membrane fusion protein Fig1
       0.22   11.1   0.4       0.28   10.8   0.2    1.4  1  PIRT      Phosphoinositide-interacting protein family


Domain annotation for each model (and alignments):
>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.2   2.4e-44   1.1e-40       1      88 []       1      89 [.       1      89 [. 0.99

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 2.4e-44
     DUF2583  1 mkrkkalllGnvlmglGlllmvaslaysvlnqlpelelpellaeaallgifiGallWlaGarvgGrekvadrywWlrhy.dkryrrkkh 88
                mkr+++++ Gn lm+lGl++mv ++++s++nqlp+l+lp++la++a++gif GallWlaGa ++Grekv+dry+W rhy dkr+rr++h
  EHU00962.1  1 MKRHHSRMAGNALMALGLVTMVFGVGFSIINQLPSLNLPQILAQGAMFGIFFGALLWLAGACISGREKVEDRYYWERHYgDKRCRRSHH 89
                9*************************************************************************************986 PP

>> SdpI  SdpI/YhfL protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.5   1.7e-05     0.077      27      64 ..       7      62 ..       2      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
        SdpI 27 rfagklwiiaGlilllla..................lgavvlvllvlvlllvivpi 64
                r+ag+ ++++Gl++++++                   +++++ +++ +ll++++ +
  EHU00962.1  7 RMAGNALMALGLVTMVFGvgfsiinqlpslnlpqilAQGAMFGIFFGALLWLAGAC 62
                79************************999999999955666666666666665554 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   2.3e-05       0.1      83     135 ..       8      62 ..       5      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
        Fig1  83 mvaiiLtlllfllllyfplgseipllPfkska..vskvalvlsflllllwlvgal 135
                 m+  +L++l+++ +++  + s+i+ lP  + +  + + a+  +f+ +llwl ga 
  EHU00962.1   8 MAGNALMALGLVTMVFGVGFSIINQLPSLNLPqiLAQGAMFGIFFGALLWLAGAC 62 
                 6778999999999988666666666666655555999****************96 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   6.2e-05      0.28      80     104 ..       3      27 ..       1      52 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.2e-05
        PIRT  80 kevfklsGpaflslGlmllvcGlvw 104
                 +++++++G a+++lGl+ +v+G+ +
  EHU00962.1   3 RHHSRMAGNALMALGLVTMVFGVGF 27 
                 5789******************754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 853.00
//
Query:       EHU00963.1  [L=382]
Description: GGDEF domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-37  129.3   0.0    1.5e-37  128.8   0.0    1.2  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
        1.3    8.5  12.2       0.02   14.4   2.3    2.0  2  MTABC_N   Mitochondrial ABC-transporter N-terminal five TM re
        2.6    8.2  11.0        0.4   10.8   3.4    2.8  2  DUF872    Eukaryotic protein of unknown function (DUF872)
        8.9    6.5   7.9        7.2    6.8   0.0    2.7  3  SRTM1     Serine-rich and transmembrane domain-containing pro


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   3.4e-41   1.5e-37       2     161 .]     221     372 ..     220     372 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 3.4e-41
                 SB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHH CS
       GGDEF   2 ahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaela 100
                  hD+lT+++NRr+l ++ e  ++ +++++k l+v+l dld+Fk ind+yGh++GD+vL+ +++r s +l ++   aRlgg+eFa llp  s    a+++
  EHU00963.1 221 LHDPLTNIWNRRALFTSAEVMIKACQKQNKALTVVLFDLDHFKGINDRYGHHQGDQVLIDFSHRVSGMLPEGARFARLGGEEFAALLPMKS----AQAN 315
                 69***********************999************************************************************999....4577 PP

                 HHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 101 erirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                   +++  ++++ +   +  ++  ++siG ++a+ + + d+ el+  Ad+aly+aK++grnr
  EHU00963.1 316 VWCEQVRQAIHLS---RPGQIPYSVSIGFSTAD-NRHIDFGELMALADKALYQAKAKGRNR 372
                 7777777777665...3345568*********6.*************************97 PP

>> MTABC_N  Mitochondrial ABC-transporter N-terminal five TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.5      0.18   8.2e+02      66     112 ..       8      53 ..       2      76 .. 0.67
   2 ?   14.4   2.3   4.5e-06      0.02      12     125 ..     101     216 ..      86     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.18
     MTABC_N  66 lqlvlallllllalarlilraallksgevygylilalvlsllawlfs 112
                 l ++ +++l +++l+  ++ +    +++  gy+ +a++l+l+a+++s
  EHU00963.1   8 LFICELYVLGFMSLILAFAWVGSHYDRT-LGYVCVAILLTLVAFILS 53 
                 4444444555555554444444444444.599999999999999876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.5e-06
     MTABC_N  12 vWvneGlsrCFldtlvssvllgllllfgtlqlilyrk.ygte.lepkaiprsrlyklqlvlallllllalarlilraallksgevygylilalvlslla 108
                 +W    l + F+++l+  vl+  ll +g +  ++y    +++ ++ +++p++ l+ ++l++++  ++l   r +     +++++   y+i+ ++l ++ 
  EHU00963.1 101 IWSLLCLIPGFYYSLSLRVLVLCLLCIGYTGALIYFLwLARRhMDATFWPAQLLLWIHLIFHVARIFLDNSRPVGVQGAISGSNFSVYVIMESMLFVIG 199
                 6777778889**********99988888877777776678888*****************************99999999******************* PP

     MTABC_N 109 wlfsllllllerrkllp 125
                 +++ +l ++  r++   
  EHU00963.1 200 FTVTILAMVNKRTRNAL 216
                 ********999987665 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.4     9e-05       0.4      46      93 ..      65     113 ..      61     132 .. 0.90
   2 ?    1.3   0.2     0.085   3.8e+02      71     104 ..     180     213 ..     147     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9e-05
      DUF872  46 vlaallLlllGlvLlllgvvilvepseGvssavf.lvlGlllfiPGvYh 93 
                 v+++ +Ll+l    l+ ++  ++++++G+s  v  l+  ll++iPG+Y 
  EHU00963.1  65 VAMSNVLLMLAYGGLFSAFRTFCGKQPGMSGLVGaLIWSLLCLIPGFYY 113
                 788999**************************988************96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.085
      DUF872  71 seGvssavflvlGlllfiPGvYhvvyiylavrGa 104
                  +G++  v++++  +lf+ G+  ++++++  r +
  EHU00963.1 180 ISGSNFSVYVIMESMLFVIGFTVTILAMVNKRTR 213
                 6788889999999999999998888888777665 PP

>> SRTM1  Serine-rich and transmembrane domain-containing protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.6     0.012        54      38      55 ..      37      54 ..      10      61 .. 0.84
   2 ?   -3.9   0.4       3.4   1.5e+04      46      58 ..     115     127 ..     112     129 .. 0.72
   3 ?    6.8   0.0    0.0016       7.2      31      73 ..     180     222 ..     167     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
       SRTM1 38 vyvyvsiflsllafllll 55
                 yv v i+l+l+af+l  
  EHU00963.1 37 GYVCVAILLTLVAFILSS 54
                59************9975 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
       SRTM1  46 lsllaflllllvi 58 
                 lsl +++l ll i
  EHU00963.1 115 LSLRVLVLCLLCI 127
                 6777888888877 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0016
       SRTM1  31 ssgrlsnvyvyvsiflsllaflllllvialqrlkniisssssy 73 
                  sg   +vyv +  +l ++ f +++l +  +r +n + ++s  
  EHU00963.1 180 ISGSNFSVYVIMESMLFVIGFTVTILAMVNKRTRNALKAASLH 222
                 567778999999999********************99888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2636.14
//
Query:       EHU00964.1  [L=315]
Description: phosphoribosylpyrophosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-50  170.2   0.2      2e-49  166.4   0.0    2.6  3  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    1.8e-30  106.3   0.4    3.3e-30  105.5   0.4    1.5  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    1.9e-19   69.7   2.3    2.5e-19   69.3   0.6    2.0  3  Pribosyltran    Phosphoribosyl transferase domain
    0.00061   19.3   0.0    0.00093   18.7   0.0    1.3  1  UPRTase         Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.065   12.7   0.0       0.11   12.0   0.0    1.3  1  PRTase_2        Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0   5.6e-53     2e-49       1     116 []       4     121 ..       4     121 .. 0.98
   2 ?    0.5   0.0      0.15   5.5e+02      41      83 ..     207     245 ..     177     253 .. 0.71
   3 ?   -1.2   0.0      0.51   1.8e+03       3      20 ..     252     269 ..     250     307 .. 0.79

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 5.6e-53
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95 
                     +k+fag++++eLa++ia+rl ++lg+a v+rf+dgE++v+i+e+vrg d+fiiqs+++p+ndnlmel++m+dalrrasa ritaViPy+gy+rqd
      EHU00964.1   4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQD 98 
                     89********************************************************************************************* PP

  Pribosyltran_N  96 rk.ks.repisaklvaklLeaaG 116
                     r+ +s r+pi+ak+va+ L+++G
      EHU00964.1  99 RRvRSaRVPITAKVVADFLSSVG 121
                     *99777**************998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
  Pribosyltran_N  41 ieesvrgkdvfiiqslskpvndnlmelllmidalrrasakrit 83 
                     i  +v g+d++++ ++ +        l+  ++al++  akr+ 
      EHU00964.1 207 IIGDVAGRDCVLVDDMIDT----GGTLCKAAEALKERGAKRVF 245
                     4556778888887776644....44567777888888888875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.51
  Pribosyltran_N   3 ifagssskeLaekiakrl 20 
                     if+g++ ++L +++ +++
      EHU00964.1 252 IFSGNAVENLRKSVIDQV 269
                     899999999999988776 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.4   9.2e-34   3.3e-30      74     183 ..     204     313 ..     163     314 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 9.2e-34
                     ---EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHH CS
  Pribosyl_synth  74 pltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllae 168
                      + ++Gdv+Gr  ++vdd+id   ++ +aae lkerGa ++++ ath ++s +a ++l +s id+v+v +tip   +      ++t+ +s +lae
      EHU00964.1 204 VMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAVENLRKSVIDQVIVCDTIPLSEEMKSLPNVRTLTLSGMLAE 298
                     5899**********************************************************************9999999************** PP

                     HHHHHHHT---TT-S CS
  Pribosyl_synth 169 airrihngesmsylf 183
                     airri n+es+s +f
      EHU00964.1 299 AIRRISNEESISAMF 313
                     ************998 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.57     2e+03      43      74 ..      15      46 ..      14      56 .. 0.79
   2 ?   -2.9   0.0       1.2   4.3e+03     106     129 ..      73      99 ..      70     116 .. 0.67
   3 !   69.3   0.6     7e-23   2.5e-19      26     122 ..     159     248 ..     151     276 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.57
                  HHHHHHHHSTT-EE-EEEEEE-TTT--EE... CS
  Pribosyltran 43 fakiladeLevplayvrkvkyrpdgseeaarg 74
                  +a+++a++L   l +  + +++++  +++++ 
    EHU00964.1 15 LAQRIANRLYTSLGDAAVGRFSDGEVSVQINE 46
                  68999999999999999988888888887654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
                   HHHHHHCC-BSEEEEEEEE...E-HHH CS
  Pribosyltran 106 alelLkekgpeevriavlv...dkpat 129
                   ++++L+++ + ++ ++ ++   ++ ++
    EHU00964.1  73 MVDALRRASAGRITAVIPYfgyARQDR 99 
                   678888888888888888766433333 PP

  == domain 3  score: 69.3 bits;  conditional E-value: 7e-23
                   --GGGEEEEEEETTTHHHHHHHHHHS.TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEE CS
  Pribosyltran  26 yngkpdvvvgiargGvpfakiladeL.evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevria 121
                   ++ ++++vv ++ gGv++a ++a+ L +  +a+++k++ r+++s++++          +d+ag+ +++VDD++dtGgTl++a+e+Lke+g+++v + 
    EHU00964.1 159 IGLENPIVVSPDIGGVVRARAIAKLLnDTDMAIIDKRRPRANVSQVMH--------IIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAY 247
                   57899*********************8888999999999999999998........79**********************************98655 PP

                   E CS
  Pribosyltran 122 v 122
                   +
    EHU00964.1 248 A 248
                   5 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.6e-07   0.00093     110     173 ..     202     265 ..     172     287 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-07
     UPRTase 110 eyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeef 173
                   + ++  ++a r  +l+D +i TGg++++a + Lkerg++         + s ++v++l +++
  EHU00964.1 202 SQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAVENLRKSV 265
                 34444557788999***********************998654444455566666666666655 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.1e-05      0.11     122     152 ..     214     244 ..     204     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
    PRTase_2 122 kelvLvDDEistGktalnliralqeklprkr 152
                 +  vLvDD i tG t+++ ++al+e+  ++ 
  EHU00964.1 214 RDCVLVDDMIDTGGTLCKAAEALKERGAKRV 244
                 678********************99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2377.57
//
Query:       EHU00965.1  [L=285]
Description: 4-diphosphocytidyl-2-C-methylerythritol kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-11   43.6   0.0    4.4e-11   42.8   0.0    1.4  1  GHMP_kinases_N  GHMP kinases N terminal domain
    2.1e-06   28.0   0.0    4.8e-06   26.8   0.0    1.5  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   4.9e-15   4.4e-11       1      65 [.      91     148 ..      91     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 4.9e-15
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvyG 65 
                     +i i++++P+g GLG+++++a+++++Al++l+       + ++   +laq g+  g Dv+++v G
      EHU00965.1  91 RIAIEKRLPMGGGLGGGSSDAATVLVALNHLW-------QTGFSPTELAQMGVKLGADVPVFVKG 148
                     689*****************************.......89********************9977 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.4e-10   4.8e-06      23      77 ..     209     259 ..     196     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.4e-10
  GHMP_kinases_C  23 s..elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvar 77 
                     +  e   vv++ ++e++el+++l+e+    ++l+G+  G++vfa f+++ +a qv++
      EHU00965.1 209 NdcES--VVRKRFREVDELVSWLLEYA--PSRLTGT--GACVFAEFDTEYAARQVLE 259
                     13455..99999***********9999..*******..********88888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2231.09
//
Query:       EHU00966.1  [L=208]
Description: outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-44  150.1   3.9    6.3e-44  149.7   3.9    1.1  1  LolB        Outer membrane lipoprotein LolB
     0.0068   16.1   0.1     0.0081   15.9   0.1    1.3  1  DUF4292     Domain of unknown function (DUF4292)
  ------ inclusion threshold ------
       0.02   15.1   0.1      0.069   13.4   0.0    1.8  2  DUF5110     Domain of unknown function (DUF5110)
       0.09   12.7   0.1       0.21   11.5   0.1    1.6  1  TOH_N       Tyrosine hydroxylase N terminal
       0.11   13.1   0.7       0.62   10.6   0.0    2.4  2  RHS_repeat  RHS Repeat


Domain annotation for each model (and alignments):
>> LolB  Outer membrane lipoprotein LolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   3.9   1.7e-47   6.3e-44       2     153 .]      52     205 ..      51     205 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 1.7e-47
        LolB   2 qwqlsGrlavkspeqsvsanfdwqqqgdr.yeleLtspLGqtvlelevdpegatledsdgqaytaadaeeLleellgwelPvsgLrqWvlglpapaaee 99 
                 q+q++G +a+ s++q+v+a+f+wqq+ ++ y+l Lt+pLG+t+l+l ++++ ++++ds+g++y ++da++++ +l+g+++P+++LrqW+ glp  +a++
  EHU00966.1  52 QYQTRGAFAYLSDKQKVYARFNWQQTAPDrYRLLLTNPLGSTELQLDAQGSVVQIVDSQGKRYVSNDAQKMISQLTGMDIPLTNLRQWMMGLPG-DATD 149
                 8***********************776666****************************************************************.9*** PP

        LolB 100 leldeqgrlekleq....dgwevrYqnyqdvegvplPkrlelereelqqrikLvideW 153
                 ++l++q +l++l++    + w+v+ + y+++ +++lP++lel+++++  rikL++d+W
  EHU00966.1 150 YQLNDQYQLRSLNYqhdgQTWQVTIAGYDSNVTPALPASLELKEGDQ--RIKLRMDSW 205
                 ******************************99999*******77777..********* PP

>> DUF4292  Domain of unknown function (DUF4292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.3e-06    0.0081      54     135 ..      99     178 ..      47     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-06
     DUF4292  54 itpdsvlvydklnkryfvg.dfsnLskllgvelsfellqnlllGqlleplraekskvkkeggvvvltvkkgnlkkefvidpsn 135
                    + v+++d   kry++    + +s+l+g+++  ++l   ++G    p+ a++++++ + +  +l++++++ + +++i   +
  EHU00966.1  99 AQGSVVQIVDSQGKRYVSNdAQKMISQLTGMDIPLTNLRQWMMGL---PGDATDYQLNDQYQLRSLNYQHDGQTWQVTIAGYD 178
                 5567799************4455678*******************...*******9999999999999998888888876655 PP

>> DUF5110  Domain of unknown function (DUF5110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.79   2.8e+03      35      40 ..      71      76 ..      51     112 .. 0.60
   2 ?   13.4   0.0   1.9e-05     0.069      21      58 ..     145     183 ..     145     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.79
                EEEEEC CS
     DUF5110 35 kftvea 40
                +f++++
  EHU00966.1 71 RFNWQQ 76
                345554 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.9e-05
                 SSSSCCC.CTBEEEEEEEEEC-STTCEEEEEEEEEE-TT CS
     DUF5110  21 GetydYe.kGeyaktkftveadggkltltigpreGsykg 58 
                 G+ +dY+ +++y++ ++++++dg+++++ti+    + ++
  EHU00966.1 145 GDATDYQlNDQYQLRSLNYQHDGQTWQVTIAGYDSNVTP 183
                 7789**************************977766666 PP

>> TOH_N  Tyrosine hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.8e-05      0.21       1      11 [.      31      41 ..      31      51 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
       TOH_N  1 PTPSltsprfk 11
                P+PS+t+p++ 
  EHU00966.1 31 PGPSATAPQWQ 41
                9*********6 PP

>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.62      11      37 ..      87     112 ..      83     113 .. 0.89
   2 ?   -0.7   0.7       0.6   2.1e+03      20      30 ..     163     173 ..     145     178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
  RHS_repeat  11 tdpsGrvttYtYDaqGrlttlTdpdGr 37 
                 t+p G +t ++ DaqG ++++ d +G 
  EHU00966.1  87 TNPLG-STELQLDAQGSVVQIVDSQGK 112
                 89***.55****************995 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.6
  RHS_repeat  20 YtYDaqGrltt 30 
                 Y+ D+q + +t
  EHU00966.1 163 YQHDGQTWQVT 173
                 77777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1603.50
//
Query:       EHU00967.1  [L=418]
Description: glutamyl tRNA reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-53  178.1   0.0    1.8e-52  177.0   0.0    1.6  1  GlutR_N          Glutamyl-tRNAGlu reductase, N-terminal domai
    1.2e-48  164.7   0.7    2.3e-48  163.8   0.7    1.5  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    3.1e-23   82.0   2.8    3.7e-23   81.8   0.4    2.4  2  GlutR_dimer      Glutamyl-tRNAGlu reductase, dimerisation dom
    5.9e-05   23.6   3.9    7.8e-05   23.2   1.4    2.6  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00049   19.1   0.4      0.001   18.1   0.4    1.5  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
     0.0023   18.2   0.3     0.0065   16.7   0.3    2.0  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.016   16.0   0.3       0.28   12.0   0.0    2.6  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
       0.08   13.4   0.1       0.26   11.7   0.1    1.9  1  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.0     8e-56   1.8e-52       1     146 []       6     156 ..       6     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 8e-56
     GlutR_N   1 iginhktapvelreklafseeelkellkel.ee.kvkeaviLsTCNRtEiylsaeeeeeaseellellaevs...leelkeklyvlegeeavrHlfrVa 94 
                 +ginhktap++lre++af  e+l+++l++l ++  v++ v+LsTCNRtE+yls+e++ + +e+l+++l++++   +e+++++ly ++++eav+Hl+rVa
  EHU00967.1   6 LGINHKTAPIALRERVAFGPESLEQALDSLlSQpMVQSGVVLSTCNRTELYLSVEQQVDLQERLVRWLCDYHqldEEDVRNSLYWHQDNEAVSHLMRVA 104
                 69***************************99887999**********************************888899********************** PP

     GlutR_N  95 sGLdSlvlGEdqIlgQvkeayelakeagtlgkvLerlfqkaikvakrvrtet 146
                 sGLdSlvlGE+qIlgQvk+a++ +++ ++l+++Ler+fqk+++vakrvrtet
  EHU00967.1 105 SGLDSLVLGEPQILGQVKKAFADSQRGHALSSELERMFQKTFSVAKRVRTET 156
                 ***************************************************8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.7     1e-51   2.3e-48       2     138 .]     172     306 ..     171     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 1e-51
                   HHHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCC CS
  Shikimate_DH   2 lakkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveea 98 
                   la++++esl++ +vll+GaGe++elva+hL++++vkk+++aNRt+era++la+e+++e   ++ l +++++la+ad+vi++t+s+ pi+ k+++e+a
    EHU00967.1 172 LARQIFESLSTVNVLLVGAGETIELVARHLSEHQVKKLIIANRTRERADALAKEVGAE---VIGLADIDARLADADIVITSTSSPLPIIGKGMMERA 265
                   89*****************************************************888...************************************ PP

                   HHH.S...EEEEE--SS-SB-TTGGGSTTCCCEEHHHHHHH CS
  Shikimate_DH  99 lkkrk.kplllvDiavPRdvepevaeledvrlytvDdLkev 138
                   lk+r+ +p+llvDiavPRdvepev++l +++ly+vDdL+++
    EHU00967.1 266 LKARRnQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQAI 306
                   ****99********************************986 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1         2   4.4e+03      16      62 ..     200     223 ..     190     230 .. 0.49
   2 !   81.8   0.4   1.7e-26   3.7e-23       1      96 [.     320     416 ..     320     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S..--------TTHH CS
  GlutR_dimer  16 wlkslevvptIkalrekaeeireeeleralkklaldgedreeleklt 62 
                   l +                          kkl + +++re  ++l+
   EHU00967.1 200 HLSE-----------------------HQVKKLIIANRTRERADALA 223
                  3333.......................33344444444444444444 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 1.7e-26
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S..-------.-TTHHHHHHHHHHHHHHHHHHSS-TTTT.HHHHHHHHH.. CS
  GlutR_dimer   1 kAeaiIeeeveefeawlkslevvptIkalrekaeeireeeleralkklaldgedree.lekltrslvnkllheptarLkeaedeee.ellealrrlFn 96 
                  +Ae+i+ +e ++f++wl+s+++v+ I+++r++a++ir+e   ral+ l+ +g d+++ +++l+++l+n+l+h+pt++L++a+++++ e l++lr+ ++
   EHU00967.1 320 QAESIVVQECSDFMTWLRSQGAVNSIREYRAQADDIRAELEGRALQALQ-QGADPQKvMQELAHKLTNRLIHAPTKSLQQAARDGDsERLQILRDSLG 416
                  7************************************************.*******************************55555699**9998766 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.3   1.4e+04      67      94 ..      21      49 ..      21      51 .. 0.60
   2 !   23.2   1.4   3.5e-08   7.8e-05       4      69 ..     187     250 ..     184     282 .. 0.83
   3 ?   -2.4   0.0       3.4   7.6e+03      17      29 ..     365     377 ..     360     404 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.3
                   E-S-HHHHHHHHHHC.GHHHHTTSEEEEE CS
  F420_oxidored 67 lavkpedveevlsel.akdalkgklvisv 94
                   +a+ pe +e++l++l  +   +  +v+s+
     EHU00967.1 21 VAFGPESLEQALDSLlSQPMVQSGVVLST 49
                   57778888888888833333444455555 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3.5e-08
                    EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH.H-SEEEE-S CS
  F420_oxidored   4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae.eadvvvlav 69 
                    ++GaG+ +e +a+ l+++    +++++a +r+ e+a++la+e+g++v++ +  +a   +ad+v+ + 
     EHU00967.1 187 LVGAGETIELVARHLSEHQ--VKKLIIA-NRTRERADALAKEVGAEVIGLADIDARLaDADIVITST 250
                    57****************8..9999988.********************999999544999999764 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.4
                    HHHHTTS-GGCEE CS
  F420_oxidored  17 gllaagaqpheiv 29 
                    ++l++ga+p++++
     EHU00967.1 365 QALQQGADPQKVM 377
                    5566666666666 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   4.7e-07     0.001     132     214 ..     185     263 ..     161     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4.7e-07
                      EEEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE----SS-SB-GGGS- CS
  OCD_Mu_crystall 132 laiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvtvTaakapilkaewvk 214
                      + ++GaG   e+ ++ l++  ++k++ i +r++e a+++a+++ +   ev   ++     ++adiv+t T +  pi+ + +++
       EHU00967.1 185 VLLVGAGETIELVARHLSE-HQVKKLIIANRTRERADALAKEVGA---EVIGLADIDARLADADIVITSTSSPLPIIGKGMME 263
                      5589999999999998875.579***************9999885...****************************9998876 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   2.9e-06    0.0065       1      52 [.     185     234 ..     185     326 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.9e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEE CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeai 52 
                      vl++GaG + + va+ l++h+    ++++a r++e+++ala+++  + +  +
       EHU00967.1 185 VLLVGAGETIELVARHLSEHQVK--KLIIANRTRERADALAKEVGAEVIGLA 234
                      799*****************977..9*************9976533333333 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.28       2      85 ..     184     268 ..     183     277 .. 0.80
   2 ?    0.9   0.0      0.34   7.5e+02      27      59 ..     302     337 ..     287     356 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE..EESSHHHHHTCTTESEEEE-S-GGG...HHHHHHHHHHT CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve..aysdleelladpeidavivatpngt...heelakaalea 85 
                   +v+++GaG   +  +r l e+ +  +++ + ++  era+a+a++ g+e    +d+++ la  ++d+vi  t + +   ++ ++++al+a
    EHU00967.1 184 NVLLVGAGETIELVARHLSEH-QVKKLI-IANRTRERADALAKEVGAEviGLADIDARLA--DADIVITSTSSPLpiiGKGMMERALKA 268
                   899******999999888888.555665.99*****************887899999999..778887777774444577777777776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.34
                   EEEEEECSSHHHHHHH...HHHTTHEEESSHHHHHT CS
  GFO_IDH_MocA  27 evvalldpdaeraeav...aesfgveaysdleella 59 
                   ++ a+++++ ++ +a+   aes +v+ +sd+   l+
    EHU00967.1 302 DLQAIIEQNLAQRKAAavqAESIVVQECSDFMTWLR 337
                   788999999999998888899999998888665555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.26       4      71 ..     179     252 ..     176     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvk......laeeelekdlegadlviaatdd 71 
                     l++ +vl+vG+Ge  +  +r+l e + k  ++a+++ e ++ l k      +   ++++ l++ad+vi+ t+ 
     EHU00967.1 179 SLSTVNVLLVGAGETIELVARHLSEHQVKKLIIANRTRERADALAKevgaevIGLADIDARLADADIVITSTSS 252
                    677889******************************7777676555322221223446888999******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2899.12
//
Query:       EHU00968.1  [L=360]
Description: peptide chain release factor RF-1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-75  253.6   1.1    1.6e-75  253.2   0.2    1.6  2  PCRF          PCRF domain
    5.7e-41  139.1   0.1    5.7e-41  139.1   0.1    2.1  3  RF-1          RF-1 domain
    0.00089   19.5   0.3    0.00089   19.5   0.3    2.7  3  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.33   11.1   0.0    1.5  1  dUTPase_2     dUTPase


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.2   0.2   3.6e-79   1.6e-75       1     193 []      12     203 ..      12     203 .. 0.99
   2 ?   -2.2   0.0      0.72   3.2e+03      22      57 ..     262     297 ..     254     312 .. 0.54

  Alignments for each domain:
  == domain 1  score: 253.2 bits;  conditional E-value: 3.6e-79
                 HHHHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTS CS
        PCRF   1 leeeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkklLlpkdendek 99 
                 l+e++ee+e+ l d  v++dqe++++ls+e+a+l+++++ +++++++++d+e+ak ll +d+e++++a+eel++++++ ++le++l+ lLlpkd++de+
  EHU00968.1  12 LQERHEEVEAMLGDAGVIADQERFRALSREYAQLTDVTRCFRDWQQNQDDIETAKMLL-DDPEMRDMAQEELQAAREKTDALEQQLQLLLLPKDPDDER 109
                 589***************************************************9999.**************************************** PP

                 EEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 100 naileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 ++++e+raG+GGdeaa+fa+dL+rmY+ryae+++w+ve+++a++ e+gG+kev+++i g+gaYg+LkfEsG HRvqRvpetesqgrihTS++tV
  EHU00968.1 110 DCFVEVRAGTGGDEAAIFAGDLFRMYSRYAESRRWRVEIVSANDGEHGGYKEVIARIMGDGAYGRLKFESGGHRVQRVPETESQGRIHTSACTV 203
                 *********************************************************************************************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.72
                 GGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...H CS
        PCRF  22 ekakklskelaeleeivealeeleealedleeakel 57 
                 ++ k+ +k l+ l + ++a+e +++ ++++++ ++l
  EHU00968.1 262 SQHKNKAKALSVLGARIHAAEMAKRHEAEASTRRNL 297
                 444444444555555555555555555554444444 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.3   5.9e+03      75      78 ..      78      81 ..      48      97 .. 0.43
   2 ?   -2.2   0.0      0.82   3.7e+03      17      38 ..     177     198 ..     176     206 .. 0.76
   3 !  139.1   0.1   1.3e-44   5.7e-41       6     116 .]     216     321 ..     211     321 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
                HHCC CS
        RF-1 75 eeek 78
                ++e+
  EHU00968.1 78 AQEE 81
                1111 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.82
                 E---SSSSSSGCSSSCEEEEEE CS
        RF-1  17 frssGaGGQnVNktesaVrlth 38 
                 f s+G+  Q V  tes+ r++ 
  EHU00968.1 177 FESGGHRVQRVPETESQGRIHT 198
                 5688888899999999998854 PP

  == domain 3  score: 139.1 bits;  conditional E-value: 1.3e-44
                 E--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S.--ECEE CS
        RF-1   6 eidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgs.sekiRt 103
                 ei+++dl+idtfrssGaGGQ+VN+t+sa+r+thlptg ivvecq+eRsq+kN++kAl++L a+++++e+++++e+e+++r ++    +g+g+ s++iRt
  EHU00968.1 216 EINPSDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTG-IVVECQDERSQHKNKAKALSVLGARIHAAEMAKRHEAEASTR-RN---LLGSGDrSDRIRT 309
                 7************************************.8*************************8887888777777776.45...789********** PP

                 EECGCTTEEEETT CS
        RF-1 104 ynkkpqsrvkdhr 116
                 yn+ pq+rv+dhr
  EHU00968.1 310 YNF-PQGRVTDHR 321
                 ***.********9 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3     2e-07   0.00089      14      54 ..       6      46 ..       3      56 .. 0.93
   2 ?    2.6   5.0     0.035   1.6e+02      23      58 ..      61      97 ..      56     101 .. 0.79
   3 ?   -3.5   0.0       2.8   1.3e+04       9      21 ..     270     282 ..     263     288 .. 0.55

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2e-07
  ABC_tran_CTD 14 eaeIeaLEeeiaeleaeladpelysdpeklaelsaeleele 54
                   a++eaL+e+ +e+ea l d+++ +d+e++ +ls+e+++l 
    EHU00968.1  6 VAKLEALQERHEEVEAMLGDAGVIADQERFRALSREYAQLT 46
                  5899**********************************996 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.035
  ABC_tran_CTD 23 eiaeleaeladpelysdp..eklaelsaeleeleaeLe 58
                  +i++    l dpe+  d   e+l+++ ++ ++le++L+
    EHU00968.1 61 DIETAKMLLDDPEMR-DMaqEELQAAREKTDALEQQLQ 97
                  567777789999975.444799**************97 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.8
  ABC_tran_CTD   9 eleeleaeIeaLE 21 
                    l  l a+I a E
    EHU00968.1 270 ALSVLGARIHAAE 282
                   4444455555554 PP

>> dUTPase_2  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.3e-05      0.33      34      68 ..      32      67 ..       7      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.3e-05
                ....HHHHHHHHHHHTTS.---SSSSTT.---HHHH CS
   dUTPase_2 34 eekllAllvElaElanetrsfKyWknkk.ksdlekv 68
                +e+++Al  E a l + tr+f+ W++++   +++k+
  EHU00968.1 32 QERFRALSREYAQLTDVTRCFRDWQQNQdDIETAKM 67
                5788********************999856666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2625.72
//
Query:       EHU00969.1  [L=280]
Description: release factors RF-1 and RF-2 N5-glutamine methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-21   74.5   0.0    1.1e-20   74.0   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    6.6e-18   65.1   1.7    9.8e-18   64.5   0.1    2.2  1  PrmC_N           PrmC N-terminal domain
    6.7e-17   61.5   0.0    2.6e-16   59.6   0.0    1.8  2  MTS              Methyltransferase small domain
    4.9e-10   40.0   0.0    1.1e-09   38.9   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    7.8e-10   38.8   0.0    4.9e-09   36.2   0.0    2.0  1  Methyltransf_23  Methyltransferase domain
    7.8e-08   32.2   0.0    1.6e-07   31.2   0.0    1.4  2  UPF0020          Putative RNA methylase family UPF0020
    1.3e-07   31.4   0.0    1.9e-07   30.8   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      2e-06   28.3   0.0    5.5e-06   27.0   0.0    1.9  1  Methyltransf_11  Methyltransferase domain
      1e-05   25.1   0.0    1.8e-05   24.3   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
    1.4e-05   24.8   0.0    3.8e-05   23.4   0.0    1.6  2  Cons_hypoth95    Conserved hypothetical protein 95
    1.7e-05   25.4   0.0    7.8e-05   23.3   0.0    2.1  1  Methyltransf_12  Methyltransferase domain
    0.00011   22.1   0.0    0.00016   21.5   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00052   19.8   0.0    0.00078   19.2   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
    0.00055   19.3   0.0      0.001   18.4   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
    0.00081   18.7   0.0     0.0011   18.3   0.0    1.1  1  N6_Mtase         N-6 DNA Methylase
  ------ inclusion threshold ------
      0.026   13.8   0.0      0.039   13.2   0.0    1.1  1  Bunya_G2         Bunyavirus glycoprotein G2
      0.048   13.6   0.0      0.082   12.9   0.0    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
      0.056   12.8   0.0        0.1   11.9   0.0    1.3  1  GidB             rRNA small subunit methyltransferase G
       0.12   11.6   0.0       0.16   11.2   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
       0.15   12.5   0.0       0.42   11.1   0.0    1.7  1  Eco57I           Eco57I restriction-modification methylase
       0.19   11.7   0.0        0.8    9.6   0.0    1.8  2  Methyltransf_18  Methyltransferase domain
       0.23   10.8   0.0       0.35   10.2   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.3e-23   1.1e-20       6     126 ..     112     250 ..     108     275 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.3e-23
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsn................. 81 
                      rvlDlG+GtG++++++a   +p+++v+G+D+ + a+ lA+ na++l + n++F ++ +++ l     + +fDli+sn                 
       EHU00969.1 112 RVLDLGTGTGAIALAIA-SERPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHSHWFAqLT----PTRFDLIVSNppyidasdhhleegdvr 200
                      8****************.669***************************************666....589*******99999999999999999 PP

  Methyltransf_31  82 ....evl....naladpdkileeiervlkpggilliedprllaelpakveees 126
                          ++l    + +ad+   + + +  l+pgg ll+e+ + ++e     ++ +
       EHU00969.1 201 feprSALvadeAGMADLRWLIAQSPAWLQPGGWLLLEHGWQQDEAV---RQLM 250
                      98886667899999****9999******************444444...2222 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   1.2e-20   9.8e-18       1      71 []       5      73 ..       5      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.2e-20
      PrmC_N  1 eaLreaearLkaagieeaeldAelLlahvlglsrsdlllrgerelteeqlerfeelierRaarePlqyIlG 71
                ++L++a a+L     ++++ dAe+Ll +v+g+ rs+l++  e+ l+++ql+++++l++rRa++eP+++++G
  EHU00969.1  5 HWLKQAVATLCGG--DSPKRDAEILLGYVTGKPRSWLVAFDETLLSDAQLQQLTALLARRARGEPIAHLVG 73
                59********999..******************************************************99 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   3.2e-19   2.6e-16      25     112 ..     104     191 ..      93     199 .. 0.87
   2 ?   -0.8   0.0       1.2     1e+03     121     137 ..     220     236 ..     211     264 .. 0.72

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 3.2e-19
                 HHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---STTTCH CS
         MTS  25 etlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPfhagka 112
                   lp+ +  +vlDlG+G+G++++a+a+e p+ +v  vd   +A+++a+ n+++ +++ +++v+s  ++++++ +fdlivsNPP+ + ++
  EHU00969.1 104 ARLPA-APARVLDLGTGTGAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAIAnATFVHSHWFAQLTPTRFDLIVSNPPYIDASD 191
                 34555.5557*********************************************999*************************977665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
                 HHHHHHHHEEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLli 137
                 lia++++ L++gG Ll+
  EHU00969.1 220 LIAQSPAWLQPGGWLLL 236
                 89999999999998875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.3e-12   1.1e-09       1      71 [.     113     183 ..     113     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvss 71 
                      vLdlG+GtG ++la+a + ++++v+gvD  +++++ a+ +a++  + n++fv+    +   +  +fDl+vs+
       EHU00969.1 113 VLDLGTGTGAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAIaNATFVHSHWFAQLTP-TRFDLIVSN 183
                      9*****************879********************997778****99998554434.48*****95 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     6e-12   4.9e-09      11      90 ..     101     184 ..      94     262 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6e-12
  Methyltransf_23  11 dklerllpklraggrvLdiGcGtGillevl.ren.gfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlre 90 
                      ++l+rl+    a++rvLd+G+GtG  +  + +e+  ++v+gvD  p+av++a+         +a + +++ f    a+    +fdlIv++ 
       EHU00969.1 101 QALARLP---AAPARVLDLGTGTGAIALAIaSERpDCTVIGVDRVPAAVALAQdnaahlaiaNATFVHSHWF----AQLTPTRFDLIVSNP 184
                      4555554...79************6666662444346******************99999999999999999....666667*****9985 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     2e-10   1.6e-07      42     134 ..      97     189 ..      96     197 .. 0.85
   2 ?   -3.4   0.0       7.9   6.5e+03      40      65 ..     232     257 ..     231     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2e-10
                 HHHHHHHHHTT--TTTT----SS..HHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE------- CS
     UPF0020  42 ilIEaallganiapgllrefvle..lkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGer 134
                 il+E al    +ap  + +  +   + a a +++r++  ++g+D  +++v+ a++Na +  +++   + +  +a+L+ ++  +d+iv+npPY ++
  EHU00969.1  97 ILVEQALARLPAAPARVLDLGTGtgAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHSHWFAQLT-PT-RFDLIVSNPPYIDA 189
                 78888888888887666555444667777888899999***************************************.88.7**********765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.9
                 SHHHHHHHHHHTT--TTTT----SSH CS
     UPF0020  40 GtilIEaallganiapgllrefvlel 65 
                 G +l+E ++++ +++ +l+ ++ +++
  EHU00969.1 232 GWLLLEHGWQQDEAVRQLMCQHHYQA 257
                 56788888888888877776666654 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.3e-10   1.9e-07     153     233 ..     101     183 ..      94     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.3e-10
        PrmA 153 ealeklvkegeevlDvGtGSGiLaiaaak.LgakkvvavDiDevAvkvakeNaelNkveaklevalseell.keekadvivaN 233
                 +al +l  + ++vlD+GtG+G +a+a a      +v++vD  + Av  a++Na+   +++   v+ +  ++ + +++d+iv+N
  EHU00969.1 101 QALARLPAAPARVLDLGTGTGAIALAIASeRPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHSHWFAQlTPTRFDLIVSN 183
                 67777888889**********877775440445689*********************9997768765333323589*****99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.7e-09   5.5e-06       1      68 [.     114     183 ..     114     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 6.7e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvss 68 
                      Ld+G+GtG++a a+a+    ++v+gvD  +++++la+++a    + + +fv++     ++    fDl+vs+
       EHU00969.1 114 LDLGTGTGAIALAIASERpdCTVIGVDRVPAAVALAQDNAAHLAIaNATFVHSHWFA-QLTPTRFDLIVSN 183
                      8**************55558********************99999999999999996.89999******98 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.2e-08   1.8e-05       5      59 ..     113     167 ..     110     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.2e-08
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES- CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgd 59 
                     vl++G+G G + +a+A ++Pd++++G++     va + +++++l + N   +++ 
      EHU00969.1 113 VLDLGTGTGAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHSH 167
                     79********************************************998887765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.7e-08   3.8e-05      41     126 ..     109     189 ..      90     202 .. 0.82
   2 ?   -2.1   0.0       3.1   2.6e+03     139     156 ..     225     242 ..     219     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.7e-08
                    CC-EEEETT-TTSHHHHHHHH.TT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTT CS
  Cons_hypoth95  41 egarvLDlfaGsGalglEAlS.RgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyake 126
                      arvLDl  G+Ga++l  +S R    ++ v++ ++av++ ++n ++l + +  a++++++  a l+      +fd++  +PPy + 
     EHU00969.1 109 APARVLDLGTGTGAIALAIASeRPDCTVIGVDRVPAAVALAQDNAAHLAIAN--ATFVHSHWFAQLT----PTRFDLIVSNPPYIDA 189
                    5789*************98885666778889******************998..6666665444333....357**********765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
                    TT-EEEEEEEEEEEECCS CS
  Cons_hypoth95 139 kkllkenalvvvetekek 156
                      +l++++++++e+  ++
     EHU00969.1 225 PAWLQPGGWLLLEHGWQQ 242
                    469999999999996553 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   9.6e-08   7.8e-05       1      73 [.     114     183 ..     114     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 9.6e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas 73 
                      L++G+GtG+++ a++ + pd++++gvD  p+a++ a+   a+      +n ++ + + + +  +  fDl+v++
       EHU00969.1 114 LDLGTGTGAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAI---ANATFVHSHWFAQLTPTRFDLIVSN 183
                      8********************************666666666554...4444444444555555699999965 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.9e-07   0.00016      44     131 ..      78     166 ..      53     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.9e-07
                 SSS-EEEETTEEE--HHHHHHHHHHTT.-.-TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES CS
        PCMT  44 edaplsigynatiSaphmvalalelle.l.kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvg 131
                    pl+++  + i  p +  l+ + l  l  + arvL++G+G+G  +  +a   +++++v++++r++  v+ a+ n  +l+++n ++v++
  EHU00969.1  78 WSLPLRVSDATLIPRPDTEILVEQALArLpAAPARVLDLGTGTGAIALAIAS-ERPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHS 166
                 5667788888888888888888888877524569**********88766665.599************************9999988875 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.6e-07   0.00078      46     124 ..     109     180 ..      96     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.6e-07
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeeleedllekeevDli 124
                      ++ +vl+LG GtG + la+a+  p++ vi  D+   ++ l + n +    +   ++++   +W  +l++      ++Dli
       EHU00969.1 109 APARVLDLGTGTGAIALAIASERPDCTVIGVDRVPaAVALAQDNAAH---LAIANATFVHSHWFAQLTPT-----RFDLI 180
                      5679*************************999876266666666555...55566666667787777433.....35665 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.3e-06     0.001      64     134 ..     111     183 ..      92     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE.-HHHHHHHHHHS-----TTEEEEES-TTTS---.--SEEEEE CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfD.lpeVveaAkehlsageeervefvgGdffkdslP.eaDaillk 134
                      +++D+G GtGa+a ai+s  P ++vi  D +p  v+ A++     +  + +fv    f +  P + D+i+ +
      EHU00969.1 111 ARVLDLGTGTGAIALAIASERPDCTVIGVDrVPAAVALAQDNAAHLAIANATFVHSHWFAQLTPtRFDLIVSN 183
                     4678***********************99989********997777778899999999988888777887755 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-06    0.0011      50     167 ..     113     221 ..      91     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
    N6_Mtase  50 vyDpacGsggllvqaekvlkeedgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNppfnqkewkektlek. 147
                 v+D   G+g++ +  ++       ++ + ++ G++  + +++La+ N +   i+++     ++  +++      ++fd +v+Npp+ ++  ++++le+ 
  EHU00969.1 113 VLDLGTGTGAIALAIAS-------ERPDCTVIGVDRVPAAVALAQDNAAHLAIANA--TFVHSHWFAQLT---PTRFDLIVSNPPYIDA--SDHHLEEg 197
                 66666666665554444.......67888999999999999999999887777776..344555555444...469**********999..66666552 PP

    N6_Mtase 148 derfrea....vapksnadlafll 167
                 d rf+ +      +++ adl +l 
  EHU00969.1 198 DVRFEPRsalvADEAGMADLRWLI 221
                 779999888855677889998875 PP

>> Bunya_G2  Bunyavirus glycoprotein G2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.7e-05     0.039      96     134 ..     133     173 ..     124     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
    Bunya_G2  96 dct.itvdkktaqvilqtdklnhfevagtt.vksgwfkska 134
                 dct i+vd+  a v l  d+  h+ +a +t v+s wf   +
  EHU00969.1 133 DCTvIGVDRVPAAVALAQDNAAHLAIANATfVHSHWFAQLT 173
                 898579********************97654899***8766 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001     0.082       1      64 [.     117     182 ..     117     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHTT-...EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa...eviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfe 64 
                 g G+ a++lA a+     +vi+vd+ +  ++la+++ a+ +i +  +   + + ++lt +  +d+++ 
  EHU00969.1 117 GTGTGAIALAIASERpdcTVIGVDRVPAAVALAQDNAAHLAIAN-ATfVHSHWFAQLT-PTRFDLIVS 182
                 679999999999987777************************99.5446677778888.778888765 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012       0.1      51     121 ..     112     182 ..      98     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 .EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCCTTTTT-EEEEEE CS
        GidB  51 kviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivearaeekqeeekydvvts 121
                 +v+D+G+G G  ++ +a  rp+  ++ +++    +a  +   ++l+++n ++v++   ++ +   +d+++s
  EHU00969.1 112 RVLDLGTGTGAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHSHWFAQLTPTRFDLIVS 182
                 69********988888889999999999***************************9999999999999986 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.16      64     133 ..     111     182 ..      99     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
                 -EEEEES-TTSHHHHH.HHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.--SEEEE CS
        CMAS  64 mtlLdiGcGWGslvrr.averydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.kvdrvvs 133
                  ++Ld+G+G G+++   a er d  v+g+       +la+++ ++l +++ + v+   + +l   ++d +vs
  EHU00969.1 111 ARVLDLGTGTGAIALAiASERPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHSHWFAQLTPtRFDLIVS 182
                 589*********9876256789*********************************9999**9887******9 PP

>> Eco57I  Eco57I restriction-modification methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00052      0.42       2      17 ..     176     191 ..     175     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00052
      Eco57I   2 kfdviiGNPPYqesea 17 
                 +fd i+ NPPY+ +++
  EHU00969.1 176 RFDLIVSNPPYIDASD 191
                 7***********9874 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00099       0.8      10      87 ..     105     181 ..     101     182 .. 0.85
   2 ?   -1.0   0.0       1.8   1.5e+03     119     136 ..     241     258 ..     220     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00099
  Methyltransf_18  10 slvekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvv 87 
                      +l    +rv+D Gt  g +++++++e+   +vi +D  + +++ a++n+++  +  + +++ s  +++l+++ +d +v
       EHU00969.1 105 RLPAAPARVLDLGTGTGAIALAIASERPDCTVIGVDRVPAAVALAQDNAAHLAIA-NATFVHSHWFAQLTPTRFDLIV 181
                      55556789*****************************************999885.5778888888888877777775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
  Methyltransf_18 119 seaeelRkylvengfkie 136
                      ++ e +R+ +++++++ +
       EHU00969.1 241 QQDEAVRQLMCQHHYQAV 258
                      567899******999876 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00042      0.35      47     105 ..     109     166 ..      98     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00042
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE- CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqa 105
                       +a+vlD+ +Gtg +a++++++ +   +v+++D  +  +  +++ + + +  n  f+++
       EHU00969.1 109 APARVLDLGTGTGAIALAIASE-RPDCTVIGVDRVPAAVALAQDNAAHLAIANATFVHS 166
                      5789**************9865.8899***********************999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2132.32
//
Query:       EHU00970.1  [L=132]
Description: SirB2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-41  140.4   6.0    3.1e-41  140.2   6.0    1.0  1  SirB      Invasion gene expression up-regulator, SirB
  ------ inclusion threshold ------
      0.014   15.6   2.6      0.022   14.9   2.6    1.3  1  DUF1516   Protein of unknown function (DUF1516)


Domain annotation for each model (and alignments):
>> SirB  Invasion gene expression up-regulator, SirB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   6.0   3.5e-45   3.1e-41       1     120 []       5     127 ..       5     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 3.5e-45
        SirB   1 ylalkhlHlllvllslllFilrgllllkgsallqkkllkilphivdtlLllsgiaLlvllglspftka..WltaKlvllvvyivlgvval.krakskkl 96 
                 y +lk lHll+v+++++lF+lr++++  g a lq+++++ilph++dtlLllsg aL++l++++pf+++  Wlt+Kl+++++yi+lg val +r +s ++
  EHU00970.1   5 YPLLKNLHLLTVAITVSLFLLRFYWQRVGAAILQRRWVRILPHVNDTLLLLSGTALVMLTHFYPFSPQgsWLTEKLLGVIIYIALGSVALsRRPRSDRT 103
                 889**************************************************************66667********************8899***** PP

        SirB  97 rllafvlAlvvflyivslAltksp 120
                 r++afv+Al++++ i++lAl+k p
  EHU00970.1 104 RWIAFVVALIALVTIIKLALSKMP 127
                 *********************975 PP

>> DUF1516  Protein of unknown function (DUF1516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   2.6   2.5e-06     0.022       3     105 ..      11     118 ..       9     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.5e-06
     DUF1516   3 lhilsWvlliilfivalllyskgkskaakil.hmilRlfyllilvtglvllirtfk....nspllyilKvllgllvIglmEmalarkkkkksssgllil 96 
                 lh+l+ ++++ lf++ ++ ++ g++     +  ++  +   l+l++g  l++ t+      +  +++ K l  ++ I+l  +al+r+ ++  ++ + ++
  EHU00970.1  11 LHLLTVAITVSLFLLRFYWQRVGAAILQRRWvRILPHVNDTLLLLSGTALVMLTHFypfsPQGSWLTEKLLGVIIYIALGSVALSRRPRSDRTRWIAFV 109
                 79999999999999999999997665444430444456667777777777666543457677788899999999************9998777655554 PP

     DUF1516  97 fivvlvlvi 105
                 ++++++++i
  EHU00970.1 110 VALIALVTI 118
                 444445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1076.08
//
Query:       EHU00971.1  [L=269]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-42  142.4   0.0    1.1e-41  142.0   0.0    1.2  1  Transglut_core2  Transglutaminase-like superfamily
    2.4e-24   85.2   0.1    4.4e-24   84.4   0.1    1.4  1  TPR_9            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   0.0   1.2e-45   1.1e-41       3     154 ..      34     184 ..      32     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.0 bits;  conditional E-value: 1.2e-45
  Transglut_core2   3 vlaeLdalaaevraelsseraaaekleaLnellyeelgFagneddyydprnslldqVLerrrGiPislsvvylevArrlglplegvgfPghflv 96 
                      v+++L al+ae+r  +s++++a+ kle+L+el+y++++F g++  y  ++ ++ld+VL++r+G  +sl+v++l++A++l+lpl++v fP+++++
       EHU00971.1  34 VEQQLAALVAEARDYVSDQQDADLKLEKLLELFYKQWKFGGASGVYNLSDALWLDKVLKTRQGSAVSLGVILLHIAAELELPLMPVIFPTQLIL 127
                      789****************99999********************************************************************** PP

  Transglut_core2  97 rvgespegevliDPfnaGrllskedleellraalgaeaeltreflapasnrdvltRll 154
                      r+++ +++++li+Pfn G++l++++le +l++++++ a+l +++l++a++ +v++++l
       EHU00971.1 128 RADWLDGDKWLINPFN-GETLDTHTLEVWLKGNISPLARLYDDDLDEAKTVSVMRKML 184
                      ****************.****************************************8 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.1   4.9e-28   4.4e-24       1      72 [.     187     258 ..     187     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 4.9e-28
       TPR_9   1 lkaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 lka++++e+++e al v++ ll ++Pddp+e+rdRGl++aql+c + Al dL ++++++p++p  e+i+ q+
  EHU00971.1 187 LKAALMEEKQMELALNVSQVLLRIDPDDPYEIRDRGLIYAQLECDHIALTDLTYFVEQCPEDPVSEMIKVQI 258
                 89*******************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2148.14
//
Query:       EHU00972.1  [L=284]
Description: 3-deoxy-D-manno-octulosonate 8-phosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-69  232.5   0.0    4.6e-69  232.3   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family
  ------ inclusion threshold ------
      0.071   13.9   0.0       0.13   13.1   0.0    1.4  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.3   0.0   5.2e-73   4.6e-69      10     274 ..      10     275 ..       2     276 .. 0.97

  Alignments for each domain:
  == domain 1  score: 232.3 bits;  conditional E-value: 5.2e-73
                   HCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S..SSTTS-SHTTHHHTHHHHHHHHHHHT-EEEEEESSCCTHHH CS
  DAHP_synth_1  10 diliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKp.RrstvgfkGlindpdlkilsrikkelglpiatevldpisvqy 105
                   di+  +d +++++ G++++e+ + a+ ++e++ ++++kl   ++++++a+f+K+ R+s+++++G+++++++ki++  k+ +g++i+t+v++ +++q 
    EHU00972.1  10 DIRVANDLPFVLFGGMNVLESYDLAMRICEHYVNVTDKLG--IPYVFKASFDKAnRSSIHSYRGPGLEEGMKIFQALKQAFGVKIITDVHEAAQAQP 104
                   788999********************************99..******************************************************* PP

                   HHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TTHHHHHHHHHHHHHHHTTEEE--EEEEEEEEEESTSSSSSCHCHHHHHHHHHHCTSS-EE CS
  DAHP_synth_1 106 ladvvdiiqiGArttesqdllelasglskpvglKngtdvaidemkaaaekilflgvetkgiilcerglrggkktnrdvedvaavkilkeetgklpvm 202
                   +advvd+iq++A++++++dl+e+++++ +++++K+ ++v++ +m ++ +k ++ g  ++++ilc rg+ +g+   + v d+  ++++k+ t++ pv+
    EHU00972.1 105 VADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFAEGG--NDKVILCDRGSNFGY--DNLVVDMLGFNVMKKVTNNSPVI 197
                   *******************************************************..7**************..9****************999*** PP

                   EESCHHHTTCG......GGGHHHHHHHHHHHHHTTESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHHHHHHHHHHH CS
  DAHP_synth_1 203 vDvsHansrkd......ykrqkkvlklakaaiaaGiaGvmiEshlnpgkalsdgkqalkygksetdacilkeltelll 274
                   +Dv+Ha + +d      ++r+++v++la+a++a+GiaG++iE+h++p++a++dg++al ++k+e +  ++k  ++l++
    EHU00972.1 198 FDVTHALQTRDpfgaasGGRRAQVAELARAGMAVGIAGLFIEAHPEPDNAKCDGPSALPLDKLEPFLVQMKAIDDLVK 275
                   *******************************************************************99998887765 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05      0.13      39     114 ..      81     160 ..      73     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
                   HHHHHHHTTHEEESSHHHHHTCT.TESEEEE-S-G...GGHHHHHHHHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHTS CS
  GFO_IDH_MocA  39 aeavaesfgveaysdleelladp.eidavivatpn...gtheelakaaleagkhvllEKPlattveeakelvelaekkgk 114
                    +a+ ++fgv+  +d+ e ++ +  +d+v v+  +     + +l++a+++ g  + + KP + ++ ++ ++v+++++ g+
    EHU00972.1  81 FQALKQAFGVKIITDVHEAAQAQpVADVVDVIQLPaflARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFAEGGN 160
                   567799*****99996655555549****88877757777********************************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2114.97
//
Query:       EHU00973.1  [L=363]
Description: calcium/sodium:proton antiporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-23   82.5  34.7    1.2e-12   48.0  15.9    2.1  2  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0  15.9     7e-17   1.2e-12       4     150 ..      38     187 ..      35     188 .. 0.93
   2 !   40.7  10.8   1.2e-14   2.2e-10       2     149 ..     220     361 ..     219     363 .] 0.88

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 7e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT..HHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   4 vlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge..vdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 ++ +l+l++i  +a+ +v++a+++a   +  g+++G ++l+l++ + E+ ++ + ++tg   + l ++++++ +++++++ +G+++l+g+  +   +  
  EHU00973.1  38 GINLLALVAILSSAFSVVRHADVLA---HRLGEPYGSLILSLSVVILEVSLISALMATGDaaPALMRDTLYSIIMIVTGGLVGFALLLGG-RKFATQ-Y 131
                 567899999999*************...9*****************************9999***************************9.666556.4 PP

                 HHH.HHHHHHHHHHHHHHHHTCHHHHH.....HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldl.gllllvallllllvlllllplfv.....pgrltvleglvllllYalylvlsl 150
                 ++l g+++++++++ l++l+l++p+++     +  +++l +++ +++Y+++l++++
  EHU00973.1 132 VNLaGVKQYLIAIFPLAILVLVFPNALpggnfTAAQSLLIAAISAAMYGVFLLIQT 187
                 77889********************99***************************97 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 1.2e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +++++i+ l+++++ +++  + +e++ + l+ ++++ G  l+Al   +pE + +i a+l ++v+ a++  +Gs+++ + l+++ + +i++l+ +++ + 
  EHU00973.1 220 HAIWLIVHLIAVIAVTKMNANPLEHLLTDLNAPKQFTGF-LVALLILSPEGLGAIRAVLMNQVQRAMNLFFGSVLATISLTVPAVSIIATLTGQELIFG 317
                 5788999999999**************99**********.************************************************99888888877 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 l+ + ++++++ l+l ++ +      +gr +vl+g+++l+l++ yl   
  EHU00973.1 318 LEPPQMVIMIASLILCQISF-----STGRTNVLNGAAHLALFVGYLMTI 361
                 77755555555454444443.....47******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2788.10
//
Query:       EHU00974.1  [L=76]
Description: putative cation regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-27   96.4   4.0    1.3e-27   96.1   4.0    1.1  1  ChaB        ChaB
  ------ inclusion threshold ------
      0.036   14.6   0.0       0.07   13.6   0.0    1.5  1  NTS         N-terminal segments of PfEMP1
      0.048   14.0   0.0       0.06   13.7   0.0    1.1  1  FAM25       FAM25 family
       0.11   12.3   0.1       0.15   11.8   0.1    1.4  1  Sigma70_r2  Sigma-70 region 2


Domain annotation for each model (and alignments):
>> ChaB  ChaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   4.0   2.9e-31   1.3e-27       1      60 []       9      75 ..       9      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 2.9e-31
        ChaB  1 LPesvresLpehAqeifveafnsaleeY.d......desdeerAhrvAwaavkekYekdedgkWekk 60
                LPesv++ Lp hAq+i+++afn+a+++Y d      +es+ee+Ah+vAw+avk++Yek++d+kW++k
  EHU00974.1  9 LPESVKHVLPAHAQDIYQQAFNNAWSQYkDpddrrgNESREEVAHKVAWSAVKHDYEKGDDDKWHPK 75
                8***************************77***********************************98 PP

>> NTS  N-terminal segments of PfEMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05      0.07       1      27 [.      12      38 ..      12      39 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
         NTS  1 SAKhlLDsIGkkVhdkvkkeaakkYkd 27
                S+Kh+L   +++++ ++ ++a ++Ykd
  EHU00974.1 12 SVKHVLPAHAQDIYQQAFNNAWSQYKD 38
                89******************9999997 PP

>> FAM25  FAM25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05      0.06       7      59 ..      11      65 ..       8      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
       FAM25  7 evvkevv.eHaKeaGEKAiadalKkAqesgekvvKevtekvtntvt.navtHAaE 59
                e vk v+  Ha++   +A ++a  + ++ +++   e  e+v + v+  av H  E
  EHU00974.1 11 ESVKHVLpAHAQDIYQQAFNNAWSQYKDPDDRRGNESREEVAHKVAwSAVKHDYE 65
                679999856************************************8678888765 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.4e-05      0.15      20      46 ..      18      44 ..      12      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
                HHHHHHHHHHHHHHHHHHGGGTSTTTC CS
  Sigma70_r2 20 gadaeDlvQeaflrlwraverfdperg 46
                +a a+D++Q af ++w   ++ d+ rg
  EHU00974.1 18 PAHAQDIYQQAFNNAWSQYKDPDDRRG 44
                578*****************9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 627.63
//
Query:       EHU00975.1  [L=224]
Description: regulatory protein for cation transport [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-48  165.2   0.0    1.8e-48  164.9   0.0    1.1  1  ChaC      ChaC-like protein


Domain annotation for each model (and alignments):
>> ChaC  ChaC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   0.0     1e-52   1.8e-48       1     178 [.      47     215 ..      47     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 164.9 bits;  conditional E-value: 1e-52
                 EEEEESSHHHHS--TT-SEEEEEEEETEEEEEEEEESSSSS-SSS-EEEEEEEEHHH-EEEEEEEEE-GGGGGGGGGGGGGSTT..TTEEEEEEEEEE- CS
        ChaC   1 lwvfgYGSLiwkpdfeytesrravihgyaRrfwlsstdhRGteekPGrvltLiedeegstiGvvyripaeeaeevleyLeeRElvtnGytlkevevylk 99 
                 +w+fgYGSL+w+p fe +e   a +hg++R+f+l+ t+ RGt+ +PGr+l+L+e+  g+t+G+++r+p+++ +++l+ L++RE++t+ y  +  e+ l 
  EHU00975.1  47 VWIFGYGSLMWNPVFEADEVASASLHGWHRAFCLRLTAGRGTASHPGRMLALKEG--GITQGLAFRLPESQLHDELALLWKREMITGCYLPTWCELVL- 142
                 7*****************************************************7..***************************99855555555544. PP

                 EETTTS-EEEEEEEEEE-TTSTTB--S--HHHHHHHHHH-EETTEEHHHHHHHHHHHHHTS-----BHHHHHHHHHHHH CS
        ChaC 100 kdakeekvvlealvyvatikneqyagdedleeiAkviaaaaGpsGsnaeYlfelakaleklgigirDehLeeleelvkk 178
                    +++++ ++alv++++++++ y++d+  +++A +iaaa+Gp Gsna+Ylf+l+++l+k g  ++ + L +l+++v++
  EHU00975.1 143 ---DDQRR-VTALVFIMDPRHPLYEPDTCPQAVAPLIAAASGPLGSNAQYLFSLEEELTKRG--MQEDDLIRLAHQVRE 215
                 ...34444.69**************************************************7..99999******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.31
# Mc/sec: 2142.17
//
Query:       EHU00976.1  [L=468]
Description: serine/threonine protein kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-24   85.7   0.0    7.1e-24   84.6   0.0    1.5  1  Pkinase         Protein kinase domain
      1e-11   44.6   0.0    3.7e-11   42.8   0.0    1.8  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0009   19.2   0.1     0.0065   16.4   0.0    2.0  2  APH             Phosphotransferase enzyme family
     0.0074   15.1   0.0      0.011   14.6   0.0    1.1  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   1.6e-27   7.1e-24       1     196 [.      23     242 ..      23     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 1.6e-27
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke...................kkvlrEikilkklkhpnivrlyevfeekdelylvleyv 80 
                 +e +e +G G+fG Vy+a +++ ++++A+K+    +   ++                    +++++E ++l++++hp ++++++++e++ + y+ + y 
  EHU00976.1  23 FEIKEVIGGGGFGIVYRAWDHQLERTIAIKEYMPVSLAVRTAdmslelrgerfqklfnaglNSFIQEARLLARFNHPGLLHVLRFWEQNGTAYMGTLYY 121
                 67899*************************854433322222245668999999*******9************************************* PP

                 TTEBHHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH...TTSCB CS
     Pkinase  81 eggeladlle.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl...keney 174
                 +g +l+++    + s++e+ +++++  +l +++ +H++g +HrD+  +Ni i+e++   + DFG a++   + +  t+++  + + + E     +e e 
  EHU00976.1 122 NGMTLKEWQLtSHESITEDWIRRLLPPLLGAINTIHQAGYLHRDISLDNIQIQENQLPVLLDFGSARKEIGNLSdETEIMLKPGFAPIEQYseeGEGEQ 220
                 *****9986648889**************************************9999*********87555544499999***********76555666 PP

                 SHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 175 skkvDvWslGvilyelltgkpp 196
                 ++ +D+++lG +l +l+tg+pp
  EHU00976.1 221 GPWTDIYALGAVLHTLITGSPP 242
                 999****************998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   8.2e-15   3.7e-11       2     207 ..      24     245 ..      23     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 8.2e-15
                  EEEEEEEEESSEEEEEEEEET......TTTSSEEEEEEEEEST..........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE-- CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg......ekekkevkVavKtlke..........eateeekeelleeakimkklkhpnivkllgvctkeepllivteyv 83 
                  e+++ +G G fG V+++  ++       ke   v+ av+t +           +  +   +++++ea+++ +++hp ++++l +  ++++ ++ t y 
   EHU00976.1  24 EIKEVIGGGGFGIVYRAWDHQlertiaIKEYMPVSLAVRTADMslelrgerfqKLFNAGLNSFIQEARLLARFNHPGLLHVLRFWEQNGTAYMGTLYY 121
                  67899***********9988888888767777888899888642222222111222334789************************************ PP

                  TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE CS
  Pkinase_Tyr  84 kgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk 181
                  +g +L++   ++ +e++t +++ ++   +  +++ +++  ++Hrd++  N+ ++en++  + DfG ar+     + ++++e  l   + ++E  +e+ 
   EHU00976.1 122 NGMTLKEWQLTS-HESITEDWIRRLLPPLLGAINTIHQAGYLHRDISLDNIQIQENQLPVLLDFGSARKE--IGNLSDETEIMLKPGFAPIEQYSEEG 216
                  *******97776.7******************************************************87..77888888888888899999888776 PP

                  ...EEHHHHHHHHHHHHHHHHTTSSGTTT CS
  Pkinase_Tyr 182 ...ftsksDvWsfGvllwEiftlgespyp 207
                         +D+++ G +l+ ++t +  p++
   EHU00976.1 217 egeQGPWTDIYALGAVLHTLITGSPPPVS 245
                  33355669*************94444432 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06    0.0065     131     197 ..      91     188 ..      45     190 .. 0.75
   2 ?    0.4   0.0      0.12   5.2e+02     105     162 ..     270     329 ..     226     345 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.4e-06
                 CHHHCCCGCCTCCHHHHHHHH...........................HHHHHHHH--S.......SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 131 satarllaselldlleeleeq...........................vlaalaallpg.......elptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 +  ar  ++ ll  +++++eq                             +++++llp+         +++ lH+D++++N+ +++++ +v  ++Df+ 
  EHU00976.1  91 RLLARFNHPGLLH-VLRFWEQngtaymgtlyyngmtlkewqltshesiTEDWIRRLLPPllgaintIHQAGYLHRDISLDNIQIQENQLPV--LLDFGS 186
                 4444555555555.6666666666666777766776777777777777556666666666669*9999*****************666666..****98 PP

                 -E CS
         APH 196 ag 197
                 a+
  EHU00976.1 187 AR 188
                 86 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.12
                 HHCH.-STTTB-SHHCHTCCHHHHHHCH...HHCCCGCCTCCHHHHHHHHHHHHHHHH--S CS
         APH 105 lhqvdpaalpladflaqdlellrqlesa...tarllaselldlleeleeqvlaalaallpg 162
                 lh++d a l+ +++++q +++++ l +        +   l++ + ++  q+ aa a+++p+
  EHU00976.1 270 LHAIDCALLMKPHDRPQSIDVFAALIALpvsDVEAVVNSLQQ-RNDAQNQLDAAAADTVPP 329
                 788888888888888887777766655500023334444444.666666677777777774 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.4e-06     0.011     321     344 ..     155     177 ..     138     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.4e-06
  Pkinase_fungal 321 sLflkagiLHrDiSenNilitdsk 344
                       + +ag+LHrDiS +Ni i +++
      EHU00976.1 155 TIH-QAGYLHRDISLDNIQIQENQ 177
                     356.9**************99553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3615.82
//
Query:       EHU00977.1  [L=313]
Description: hypothetical protein CKS_3337 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2415.18
//
Query:       EHU00978.1  [L=259]
Description: protein serine/threonine phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-10   39.4   1.1      7e-10   38.9   1.1    1.3  1  PP2C_2    Protein phosphatase 2C
     0.0015   18.5   0.2       0.01   15.7   0.2    2.2  2  SpoIIE    Stage II sporulation protein E (SpoIIE)


Domain annotation for each model (and alignments):
>> PP2C_2  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   1.1   7.8e-14     7e-10       3     185 ..       8     204 ..       6     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 7.8e-14
      PP2C_2   3 rshrrrglpcqDalavwtdsggsllaVaDGaGSakrSerGariaveavvealaelleseeeeeeallraleaailadvlkeeaeaqdaelkdyatTlla 101
                 rs + ++    D+++v+ d++++ ++V DG+   +++e++a+++++ + + l+++     + ++++++ +++ ++       a+ +  ++  + tTl+ 
  EHU00978.1   8 RSQQGQRDEHADRTGVVLDAHQASFVVCDGVAGLPGGEQAAQLVCDSLLTQLHTCPHLTLAFTQQAIETCRSVLE------IAQGNNPNFATMCTTLAG 100
                 5667777778899999999999999****************************8885333334555554444444......576677799999999999 PP

      PP2C_2 102 av..vtpdeivalqiGDGaivvrdrdgevqllgepds.......geyanq.......ttfltsedaeeelrirrlkledgdalllmTDGlanslrdee. 183
                 ++  +t +++++++ GD+ + +  r g +++++ ++s       + y n+        ++l +e a++ +   ++ ledgda+l+++DG+  +l ++e 
  EHU00978.1 101 LFidRTRQRAWWAHAGDSRV-YHFRHGVLNAVTRDHSlvqklseAGYENTginsnllYNALGTEPAHPVSFSDEILLEDGDAFLVCSDGFWLNLTTREm 198
                 997777788***********.78899999999998889999988777777777777666777777777667777789*************988765554 PP

      PP2C_2 184 ....rf 185
                     r+
  EHU00978.1 199 eqtlRM 204
                 444422 PP

>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.2e-06      0.01      18     155 ..      47     206 ..      26     233 .. 0.66
   2 ?    0.0   0.0     0.076   6.8e+02      40      81 ..     208     248 ..     191     254 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHHHTTTS.HHHHHHHHHHHCHCTTSTT.....TTCEEEEEEEETTTTEEEEEEESSSSEEEEETTSTEEEEE--SS--..TTTS CS
      SpoIIE  18 eAalimgllrsalrelatagle.paevlkrlnralardleee....erfaTavlavydpstgkleyanaGhpppllvrpdggtklllastglp..lGil 109
                 +A l++ +l++ l++  + +l   +++++   ++l+   +++     + +T+  + +d  ++++ +a aG++ ++ +r  g  + ++ +++l+  l+  
  EHU00978.1  47 AAQLVCDSLLTQLHTCPHLTLAfTQQAIETCRSVLEIAQGNNpnfaTMCTTLAGLFIDRTRQRAWWAHAGDSRVYHFRH-GVLNAVTRDHSLVqkLSEA 144
                 45566677777788888777775667777777777666666655555555555555***********************.8555555555555444332 PP

                 SS.....................T-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHC CS
      SpoIIE 110 pe.....................adyetaelelepgdtlllyTDGvtEardsdgelfgkerllalla 155
                  +                         + e+ le gd  l+++DG   +   ++e+   e+ l++++
  EHU00978.1 145 -GyentginsnllynalgtepahPVSFSDEILLEDGDAFLVCSDGFWLNL-TTREM---EQTLRMVN 206
                 .13556777778888888877664445778999***********998666.55555...45555555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.076
                 HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEE CS
      SpoIIE  40 paevlkrlnralardleeeerfaTavlavydpstgkleyana 81 
                  +e+l+ +++a++r++++++  a av +  +p++ +l y+ a
  EHU00978.1 208 CEEWLTLMEHAVSREVKKDNLSALAVWIG-EPQEATLLYSLA 248
                 68899999999999999994444444444.777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1882.08
//
Query:       EHU00979.1  [L=375]
Description: hypothetical protein CKS_3339 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-09   36.7   0.2    8.7e-09   35.6   0.1    1.7  2  FHA           FHA domain
    7.1e-05   23.1   0.0    0.00014   22.1   0.0    1.5  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   9.7e-13   8.7e-09       2      69 .]      25      93 ..      24      93 .. 0.95
   2 ?   -2.7   0.0      0.86   7.7e+03      42      54 ..     189     201 ..     182     223 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 9.7e-13
                EEESSTTSSEETTS..TTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA  2 tiGRssdcdivldd..psiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69
                tiGRs+d+d+vl+d  +siSr +al++   + g+++l++ gS   +  Ng+++++g +v Lk+gd +++G
  EHU00979.1 25 TIGRSQDNDLVLPDeaRSISRLQALVHLSCN-GECRLTNQGSVTPVEHNGVPLSRGMQVSLKHGDALRIG 93
                8************76699********99988.99**********************************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.86
                 SSSEEETTEEEST CS
         FHA  42 knGtfvNgqrigk 54 
                  + t +N++++++
  EHU00979.1 189 GHNTVINEEQMRT 201
                 4668888888876 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-08   0.00014      18      87 ..      23      98 ..      15     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.6e-08
                  EEEEES-TT-SEE---..TTS-TT-EEEEEE.TTEEEEEE-CESS--EETTEE-S...ECC--TTSEEEETTEEEE CS
  Yop-YscD_cpl 18 evviGsdedcDivLsD..kevsrkhlkLeve.eesvrledlgsrngllvngerve...elelrpgdvlelGttela 87
                    +iG+++d+D+vL D  +++sr  + + +  + + rl++ gs   + +ng + +   + +l++gd+l +G   + 
    EHU00979.1 23 GGTIGRSQDNDLVLPDeaRSISRLQALVHLScNGECRLTNQGSVTPVEHNGVPLSrgmQVSLKHGDALRIGDYAID 98
                  568*************7778***999999987889*******************9644444**********87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2723.40
//
Query:       EHU00980.1  [L=232]
Description: protein phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-45  153.3   0.5    4.8e-45  152.9   0.5    1.2  1  TagF_N    TagF N-terminal domain, Type VI secretion system-as


Domain annotation for each model (and alignments):
>> TagF_N  TagF N-terminal domain, Type VI secretion system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.5   2.7e-49   4.8e-45       1     135 []       8     141 ..       8     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 2.7e-49
                 EEEE--TT-SS-EEES--HHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHC---EEEEE-TTSSSSSEEEEEEE--B-TTS-B--EEEEEEE-TTB-HHH CS
      TagF_N   1 GlyGKlPakgDFvkrrlprallaawdeWlqaglaalreelgeawkeaylaapvwrFvlaagllgeqavaGvllpSvDrvgRyfPLtvvaaleaeeasaa 99 
                 G++GKlP++gDF+++rl ++++++w++W+q+gl +++++  +a+++ +l+apvw+Fvl+ + + +q+++G+llpS+DrvgR++PL+++ +++ +++++a
  EHU00980.1   8 GWFGKLPSTGDFIHHRLTEQVITPWNHWFQQGLIHWHQQD-AAVSADFLRAPVWNFVLPITPTRQQVQMGCLLPSCDRVGRAWPLLALLSFPLSQWHPA 105
                 9***********************************9999.79******************************************************** PP

                 HHTS-SHHHHHHHHHHHHTTSTT--HHHHHHHHHT- CS
      TagF_N 100 llaaaeewfealealllsaldeelsvealeaalaal 135
                 +l+ + +w++ l+a+ll+a++++ls+++l++ ++al
  EHU00980.1 106 QLTISGDWYQDLGATLLNAVTHGLSPDQLDQHIQAL 141
                 ********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1744.23
//
Query:       EHU00981.1  [L=702]
Description: hypothetical protein CKS_3341 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-91  306.4   1.3    1.5e-91  306.4   1.3    2.1  3  ImcF-related_N  ImcF-related N-terminal domain
    1.4e-28  100.3   6.6    1.4e-28  100.3   6.6    2.1  2  IcmF-related    Intracellular multiplication and human macrop


Domain annotation for each model (and alignments):
>> ImcF-related_N  ImcF-related N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.21   1.8e+03     126     159 ..      74     110 ..      68     113 .. 0.59
   2 !  306.4   1.3   1.6e-95   1.5e-91       2     258 ..     203     475 ..     202     476 .. 0.98
   3 ?   -3.8   0.0      0.73   6.6e+03     151     174 ..     641     664 ..     638     668 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.21
  ImcF-related_N 126 earllerle..eerdaerra.allafpqqlaalrerl 159
                     ++rll+rl+  e++d+++r+    +++q+++  + rl
      EHU00981.1  74 NSRLLDRLQvaESDDPAERQaTEALLSQRFSEAAMRL 110
                     6677777766566666666623345566666555544 PP

  == domain 2  score: 306.4 bits;  conditional E-value: 1.6e-95
  ImcF-related_N   2 eedaaeWlgflklLkkhRprqPiNGvivtvsvadLlsaseeerealaralrarLqelreqlgvrfPVYvvltklDllaGFeeffsdltkeereqv 96 
                     ++da+eW++f++lLk++R rqPiNGvi+t+svadLls+s+e+r ++a+alr+rL+el++++g++fPVYv++tk+Dll+GF+++f +++k++r+ +
      EHU00981.1 203 ARDASEWQSFINLLKRYRARQPINGVILTISVADLLSDSAEARYEQANALRERLNELHQHTGIHFPVYVMVTKTDLLKGFMSYFGSMEKARRDAI 297
                     689******************************************************************************************** PP

  ImcF-related_N  97 lGftfpleeekeaeael...fdeefeeLlerlearllerleeerdaerraallafpqqlaalrerlsefleelfaenryeeapllRGvyftsgtq 188
                     +Gftfp+e+ k +++++   f+ +f +L ++l+++l+ ++ +erd ++ra++++fpq++a+lr+ lse+l+++f+++    a+  RG++ftsgtq
      EHU00981.1 298 WGFTFPWEAGKPHKQDWhlhFEGQFTQLKQQLQQQLAGQMTHERDLNERAECFLFPQEFASLRPLLSEYLDSIFSPRSETVAWNPRGLFFTSGTQ 392
                     *************9999****************************************************************************** PP

  ImcF-related_N 189 egtpldrlagalarrfgleaaaaaaasaa.............srsyFlkdLlekvifaeaglagpnrraerrrrllrraglla 258
                     eg p+dr++g+l+r+++l++a a++ +a              ++s+F++dLl++++f+e+glag+nrr+e r++ll+++g+ +
      EHU00981.1 393 EGLPFDRVMGELSRKLQLRQAGAHSIAAWdrvnrnspipgnkGQSFFIRDLLSNLVFKESGLAGSNRRWEYRNQLLHWIGYGM 475
                     **********************99999889**************************************************975 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.73
  ImcF-related_N 151 qlaalrerlsefleelfaenryee 174
                      l++l  +ls++l++ +++++y +
      EHU00981.1 641 DLQQLDWHLSQLLDQQIQSSPYAR 664
                     678888899999999999999976 PP

>> IcmF-related  Intracellular multiplication and human macrophage-killing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.14   1.2e+03     104     133 ..     313     341 ..     309     364 .. 0.63
   2 !  100.3   6.6   1.5e-32   1.4e-28       1     146 [.     527     669 ..     527     684 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.14
  IcmF-related 104 dweralegergeqererllehldallaakr 133
                   dw   +eg+ ++ + ++l+++l+ +++++r
    EHU00981.1 313 DWHLHFEGQFTQLK-QQLQQQLAGQMTHER 341
                   56555666555554.566666655555533 PP

  == domain 2  score: 100.3 bits;  conditional E-value: 1.5e-32
  IcmF-related   1 LpaLdalrdlleqlldyreeepplslrfGLyqgdkleaalraaYraalrqlllpplaarleaeLravaaapdpeeayeaLKvYlMLsdperldaafl 97 
                   Lp L++l +l+ +  ++  ++ppl +r GLy+g+++ +a++a Y++al+ lllp++a+++++ Lr+    +d e++ +aL++Y+ML++p+ +d +fl
    EHU00981.1 527 LPFLNNLVKLPVS-DQFSLDNPPLTMRAGLYRGNQVSDAAWALYQNALKSLLLPRVAQQITNLLRND-PGDDNEYSRNALRAYQMLYQPRNYDGEFL 621
                   789**********.88889***********************************************5.6889************************* PP

  IcmF-related  98 adwltrdweralegergeqererllehldallaakraiaalspl..dealV 146
                   ++wl ++++r+l+++ +  + ++l  hl +ll++  +i++ sp+  d+al 
    EHU00981.1 622 RAWLLQNLQRSLPEKVSARDLQQLDWHLSQLLDQ--QIQS-SPYarDNALM 669
                   *******************99***********97..5555.7777877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4857.87
//
Query:       EHU00982.1  [L=405]
Description: ImpK/VasF family outer membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-65  218.8   0.8    2.1e-64  217.1   0.6    1.9  2  DotU      Type VI secretion system protein DotU
    5.5e-06   26.7   0.0      9e-06   26.0   0.0    1.3  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1   0.6   2.3e-68   2.1e-64       2     204 ..      19     220 ..      18     221 .. 0.96
   2 ?   -0.8   0.0      0.11     1e+03      18      45 ..     245     273 ..     224     288 .. 0.59

  Alignments for each domain:
  == domain 1  score: 217.1 bits;  conditional E-value: 2.3e-68
        DotU   2 LldaarpllllvarlresasepdvealrerlveelrafeqrlkaagysaediedaryalcaliDEavlntpwgerseWarepLqvrffnetqgGekffe 100
                 Ll+aa+pll++v+++r+ a+++d++ lr++l +e+r feqr+k+ag++ e i +ary++c ++DEa+ +tpwg r  W++++++v+f+ne++gGekff+
  EHU00982.1  19 LLKAAAPLLNAVVQIRQAATHDDPAGLRQSLTDEIRLFEQRCKQAGLPFEMIIGARYCVCSALDEAAAQTPWGTRGVWSGNGMLVTFHNESWGGEKFFQ 117
                 899************************************************************************************************ PP

        DotU 101 rlerlledpaenldlLevyylcLaLGFeGryrleadgeeelealrqrlyeeirrlrgeaeealsphwqagdeaarrllrrelplwvilalallvllllf 199
                 +l+r++++p+++l lLe++ +cL+LG+eGryr +++g+++ + lr+rl + i++ r ++ ++ +p  q  ++  ++l r  +plw++++l++l+ +l++
  EHU00982.1 118 LLSRISQSPQQHLWLLEIINYCLLLGYEGRYRGSEKGRAQCDSLRARLKALIDETRAQQTTESTPLVQ-VHPLVNTLARPMVPLWACAMLVALIGCLIY 215
                 *****************************************************999999988888877.66666666678******************* PP

        DotU 200 lglsy 204
                 +gl++
  EHU00982.1 216 SGLNW 220
                 ***99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
        DotU  18 esas.epdvealrerlveelrafeqrlka 45 
                 +++s ++ + +lr+rl + ++a + ++ +
  EHU00982.1 245 RRPSsPQALLDLRQRLNDVIAAGQLEVSD 273
                 33334555556666666666665555555 PP

>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     1e-09     9e-06       2      95 .]     288     385 ..     287     385 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1e-09
                 B-TTS--B-GGGHHHHHHHHHHHHS-S--..EEEEE---S---HHH....HHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE CS
        OmpA   2 FapgsseLtpkaksaldkiaellkkpeqk..itveGhtdaagseer....nweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarn 94 
                 Fa + + ++p  +  l ++++++k  + k  i v  +td+++ + +    n e S +RA+a+ + lq +  ++  ++ +g+G+++p+  n++ e++ rn
  EHU00982.1 288 FAEQGTVINPVGRALLARVSAAMK--DVKgtILVSVFTDDQPVDGSrfasNYEFSFARARAISQLLQVQLADSHVLRSEGRGDSDPLLPNDSSENRTRN 384
                 999999******************..55556*********998888899*******************99999999********************999 PP

                 . CS
        OmpA  95 r 95 
                 r
  EHU00982.1 385 R 385
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2959.71
//
Query:       EHU00983.1  [L=407]
Description: response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-46  158.2   9.1    4.4e-46  158.2   9.1    2.3  2  NIT       Nitrate and nitrite sensing
    1.6e-19   69.5   1.3    4.9e-19   67.9   1.3    1.9  1  ANTAR     ANTAR domain
  ------ inclusion threshold ------
        2.1    8.6   4.3        1.4    9.1   0.6    2.7  4  DUF4287   Domain of unknown function (DUF4287)


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   9.1   7.4e-50   4.4e-46       1     229 [.      34     269 ..      34     270 .. 0.85
   2 ?    2.9   1.1     0.022   1.3e+02     133     170 ..     312     360 ..     300     405 .. 0.59

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 7.4e-50
         NIT   1 dLvhaLQkERglsagylasgg.gerkaaelaaqraatDaalaalr............a.l.aglarrldallraldqLpalRrqvdtrkldakeavaaY 84 
                 +Lvh+LQ+ERg+s++++ s g        + +qr a+ +++++ +            + + +++ + ++a+l+al++LpalR+q++++++  ++avaa+
  EHU00983.1  34 ELVHQLQRERGASTLWICSEGrL------YGEQRLASEQDVTRCQrdfcqalpkaeaQpGySRFCNLIAAALQALAGLPALRQQITQQQIVHAQAVAAF 126
                 69****************98651......555555555555553344445555555977888899999999**************9999********** PP

         NIT  85 tdviaaLldladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvtgpav 183
                 +++i++Ll+l++e+a++++ ++++r+l al  ++++kE ++qeral+aa++aag+fsa++++a  +l+ +q++ +++f+++a++a    ++ + +  a 
  EHU00983.1 127 NTIIRSLLNLVFEAADTASHPDITRALIALFSFMQGKELAGQERALGAAGFAAGQFSAEQRSAMVALIEAQEQSFSTFQQFADEAVLHHWQPLAQ--AS 223
                 ********************************************************************************************997..66 PP

         NIT 184 kaaetlrdr..lastggv...daedeeeWfaastaridqlravesrladdl 229
                 +++e+lr    +  +g++    a     Wf  +++ridq++ +e++l+++l
  EHU00983.1 224 REIERLRRIacT--DGRRddsGAPH---WFSLLSQRIDQMKLLEDQLSATL 269
                 677777766222..22222224444...*******************9875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.022
         NIT 133 aalaagrfsaalyaaflslvarqq.aalaefraaatpa..........q 170
                 +al ++++ ++l +++lsl+a+q   ++ ++++ at +          q
  EHU00983.1 312 GALNSDGLAPQLGRSLLSLIAEQSqRLQHQANELATLRatleerklldQ 360
                 6677777778888888888888665666666555551111221222222 PP

>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   1.3   8.2e-23   4.9e-19       2      54 .]     347     399 ..     346     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 8.2e-23
                 HHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHCTTTS-HHHHHHHH- CS
       ANTAR   2 qLeealeeRklieqAkgiLmeryglsedeAfrlLrklSmdsnvklrevAeavv 54 
                  L+++leeRkl++qAk  Lm+++glse+ A+++Lrk++md+n++l e+A+a+v
  EHU00983.1 347 TLRATLEERKLLDQAKNWLMQQHGLSEEHAWQRLRKSAMDQNKRLPEIAQAIV 399
                 79**************************************************8 PP

>> DUF4287  Domain of unknown function (DUF4287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   9.7e+03      12      25 ..      24      37 ..      16      43 .. 0.56
   2 ?   -3.8   0.0       2.5   1.5e+04      17      27 ..     213     223 ..     213     226 .. 0.81
   3 ?   -3.4   0.0       1.9   1.1e+04      18      27 ..     245     254 ..     243     259 .. 0.79
   4 ?    9.1   0.6   0.00023       1.4      17      51 ..     345     376 ..     343     378 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
     DUF4287 12 kTGktldewlalad 25
                +TGk ++   +l++
  EHU00983.1 24 QTGKLITTVSELVH 37
                45655544444443 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.5
     DUF4287  17 ldewlaladek 27 
                 l++w+ la+++
  EHU00983.1 213 LHHWQPLAQAS 223
                 589*9999876 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.9
     DUF4287  18 dewlaladek 27 
                  +w++l+ ++
  EHU00983.1 245 PHWFSLLSQR 254
                 5999999875 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00023
     DUF4287  17 ldewlaladekgllvkhgeivawLkeehgLghGHA 51 
                 l+ + a+++e++ll   ++  +wL ++hgL+  HA
  EHU00983.1 345 LATLRATLEERKLL---DQAKNWLMQQHGLSEEHA 376
                 67788999999999...9999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3083.06
//
Query:       EHU00984.1  [L=420]
Description: substrate-binding component of an ABC superfamily nitrate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.2e-104  347.2   1.5   7.9e-104  346.8   1.5    1.1  1  NMT1_2      NMT1-like family
  ------ inclusion threshold ------
      0.019   14.9   0.0       0.37   10.7   0.0    2.3  2  NMT1        NMT1/THI5 like
      0.091   12.6   0.1       0.15   11.8   0.1    1.3  1  DUF4158     Domain of unknown function (DUF4158)
       0.14   12.1   0.1       0.14   12.1   0.1    1.9  2  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.8   1.5  1.8e-107  7.9e-104       1     253 []      39     290 ..      39     290 .. 0.99

  Alignments for each domain:
  == domain 1  score: 346.8 bits;  conditional E-value: 1.8e-107
      NMT1_2   1 aapekeqlklGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnk 99 
                 +apek+++++Gfi+ltd+ap+v+a+ kg+ +k+Glt++++k+aswa++rdkl++gelDaahvl+ ++++++lG++g++  m+ l++ln nGqai+lsn+
  EHU00984.1  39 DAPEKATVRVGFIPLTDCAPVVMASVKGFDKKYGLTLQPSKEASWAAVRDKLISGELDAAHVLYSLIYGLQLGVAGPQHAMANLMTLNNNGQAISLSNQ 137
                 689************************************************************************************************ PP

      NMT1_2 100 lkdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtalts 198
                 lk++kv+da++lk+ ++++ +  +l++a+tfp+sth+++l+ywLa+aG++p++dv++vvvpppqmv n+k g++ gfcvgePwn++ + + iG+t++ts
  EHU00984.1 138 LKAQKVTDAASLKKSIDSQAK-GSLTFAHTFPTSTHAMWLYYWLANAGINPFDDVRTVVVPPPQMVMNMKIGNMSGFCVGEPWNQRSISDDIGFTVATS 235
                 ******************999.9**************************************************************************** PP

      NMT1_2 199 qelwkdhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaaklla 253
                 q++w+dhPek+lg+r+++v++npntaral+ a+le ++w+da+++nr+e+a++la
  EHU00984.1 236 QQIWPDHPEKILGTRAAWVKENPNTARALTAAVLETARWIDASDDNRRETAQVLA 290
                 ****************************************************985 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.043   1.9e+02       3      44 ..      55      96 ..      53     143 .. 0.79
   2 ?   10.7   0.0   8.2e-05      0.37     111     209 ..     179     275 ..     164     281 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.043
                GGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-S CS
        NMT1  3 nhaglyvAkekGYFkeeGldVeivepadpsdatelvasgkad 44
                + a++++A  kG+ k+ Gl ++  ++a  + + + + sg+ d
  EHU00984.1 55 DCAPVVMASVKGFDKKYGLTLQPSKEASWAAVRDKLISGELD 96
                678889999999999999988877777766666666666655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 8.2e-05
                 HHHHTT-.-GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEE.E-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHHHHH CS
        NMT1 111 llakdgg.dpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelri.faladlgvpdyyslvlitnekllkenpelvkkFlrAlkkGye 207
                  la++g+  ++dv +v v   ++   +++ k+  + g+  + e  + +s   ++ + +a ++  +pd  + +l t  +++kenp++++++ +A+ + + 
  EHU00984.1 179 WLANAGInPFDDVRTVVVPPPQM---VMNMKIGNMSGFCVG-EPWNQRSISDDIGFtVATSQQIWPDHPEKILGTRAAWVKENPNTARALTAAVLETAR 273
                 56666773357777777766665...444444444444444.444433333333330344555567****************************99877 PP

                 HH CS
        NMT1 208 ya 209
                 ++
  EHU00984.1 274 WI 275
                 75 PP

>> DUF4158  Domain of unknown function (DUF4158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.5e-05      0.15      88     143 ..     252     307 ..     242     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.5e-05
     DUF4158  88 akyasreqtrrehlaeIrellgyrpfteadlreleewlaqlAtetdrpkaLfdaai 143
                 a+++++ +t+r  +a+++e   + +++++ +re ++ la +A+ +++p+ L  +++
  EHU00984.1 252 AWVKENPNTARALTAAVLETARWIDASDDNRRETAQVLAGRAWINTKPEILQGRML 307
                 5567899*****************************************99987776 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.1e-05      0.14       2      17 ..       8      23 ..       7      29 .. 0.84
   2 ?   -3.5   0.3       2.6   1.2e+04      16      23 ..     375     382 ..     375     384 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  TAT_signal  2 lSRRdFLKgsAAaaAA 17
                lSRR++L  sAA++ +
  EHU00984.1  8 LSRRQLLLSSAAVGGL 23
                8************986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.6
  TAT_signal  16 AAaalggc 23 
                 AA a+g++
  EHU00984.1 375 AASAVGNV 382
                 77777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3097.80
//
Query:       EHU00985.1  [L=290]
Description: permease component of an ABC superfamily nitrate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-20   72.7  16.8    3.1e-20   72.7  16.8    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.047   8.5e+02      28      57 ..      42     103 ..      35     116 .. 0.61
   2 !   72.7  16.8   1.7e-24   3.1e-20       1     171 [.     117     274 ..     117     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.047
  BPD_transp_1  28 lslPsfv..laillvlvf..............................vilsilghlilpvi 57 
                   +++P +   l++ll++ +                               +++++g+ +l+ +
    EHU00985.1  42 RAIPALCgvLLLLLIWQIaalsskgfpgpyatweaakvlfadpfynngPNDQGIGWNVLASL 103
                   56666664333333333366777777777777777777777777777777777777777655 PP

  == domain 2  score: 72.7 bits;  conditional E-value: 1.7e-24
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   gi++G+l++  r  ++ +++ p+i +l+ + +++++++ +        ++ +  +   ++++ ++++++++++++++ +p+d+ ++ar+l +s+w+i
    EHU00985.1 117 GIPAGFLLG--RFTFVARMFNPVIALLRPVSPLAWLPIGL------LLFQRAEPASSWTIFICSIWPMIINTAEGVQRIPQDYLNVARVLQLSEWTI 205
                   89*******..*****************************......889999999999999999********************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlv 171
                   +r++++P++lp ++tg++l++g+++   v++e+l+++ G+g ++++  ++ ++ +i+    +a++++ ++  l+
    EHU00985.1 206 LRRILFPAVLPAVLTGVRLSIGIAWLVIVAAEMLTGGLGIGFWIWNEWNNLNVENIL----IAILLIGVVG-LL 274
                   ***********************************7766666666655555555554....3333322222.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2165.21
//
Query:       EHU00986.1  [L=262]
Description: ATP-binding component of an ABC superfamily nitrate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-33  116.7   0.0    1.6e-33  116.2   0.0    1.3  1  ABC_tran     ABC transporter
    2.5e-05   24.2   0.0    5.7e-05   23.1   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
    6.3e-05   22.9   0.0       0.35   10.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    7.4e-05   23.2   0.0    0.00012   22.5   0.0    1.5  1  AAA_16       AAA ATPase domain
    0.00063   19.4   0.1     0.0013   18.4   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0011   19.3   0.1      0.013   15.9   0.1    2.1  1  AAA          ATPase family associated with various cellular a
     0.0059   16.8   0.0      0.022   14.9   0.0    1.9  1  AAA_33       AAA domain
  ------ inclusion threshold ------
      0.016   15.7   0.1      0.029   14.9   0.1    1.3  1  AAA_23       AAA domain
      0.033   14.2   0.4      0.093   12.8   0.1    1.8  2  MMR_HSR1     50S ribosome-binding GTPase
      0.034   14.1   0.4       0.26   11.3   0.0    2.3  3  AAA_5        AAA domain (dynein-related subfamily)
      0.045   13.7   0.1        1.4    8.8   0.1    2.2  2  Rad17        Rad17 P-loop domain
      0.048   13.9   0.1       0.49   10.7   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.069   13.4   1.2       0.31   11.3   1.2    2.3  1  AAA_22       AAA domain
      0.081   11.7   1.5       0.16   10.8   0.0    2.0  2  ABC_ATPase   Predicted ATPase of the ABC class
       0.16   11.6   0.0       0.19   11.4   0.0    1.1  1  AAA_15       AAA ATPase domain
        0.2   11.3   0.0       0.36   10.5   0.0    1.4  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.4e-36   1.6e-33       1     136 [.      24     166 ..      24     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 1.4e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l+nvs++l++ge++ ++G++G+GKStLl+l+agl++pt+G +l+d+++++         e +v++q+++l p lt+++n                e+++
  EHU00986.1  24 LDNVSFDLHQGETLSLIGHSGCGKSTLLNLIAGLTRPTSGVLLCDNREVTG-----PGPERAVVFQNHSLLPWLTAYQNvelaveqvfkgkmnkaERRD 117
                 79*********************************************9999.....99999*****************************998777777 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +ie+ l+++++++  +++      ++SgG+kqrv +aral+ kp++lllDEp+
  EHU00986.1 118 WIEHNLNQVQMSHAMHKRP----GEISGGMKQRVGIARALAMKPRVLLLDEPF 166
                 7999999999888777776....*****************************6 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.1e-08   5.7e-05      87     121 ..      21      56 ..       5      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 5.1e-08
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                    +l++++  l++ +t  l+G+SG GKStL+n +++
   EHU00986.1  21 FLALDNVSFDLHQgETLSLIGHSGCGKSTLLNLIAG 56 
                  556788888888879*****************9987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00032      0.35       4      25 ..      39      60 ..      37     100 .. 0.77
   2 !   10.5   0.0   0.00034      0.39     235     298 ..     137     198 ..     107     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
      AAA_21  4 liGpNgsGKSnLLdaldllarl 25
                liG  g+GKS+LL ++ +l r 
  EHU00986.1 39 LIGHSGCGKSTLLNLIAGLTRP 60
                8****************99775 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00034
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                  e+S G+k+  +++ al+  +   ++ll+DEp   L+    ++l + + ++ ++ ++ ++l TH+
  EHU00986.1 137 GEISGGMKQRVGIARALAMKP---RVLLLDEPFGALDALTRAHLQDSVmRIQQALNTTIVLITHD 198
                 567888888867777777655...**************8888888555477777899*******8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-07   0.00012      23     131 ..      33     196 ..      23     256 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.1e-07
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdql.....esa.....ipysalaqalareellrqllde..aesaeleawrekleeala... 106
                 ++e + l+G+sG+GKs+l++ ++  l++    +l +++++      e+a      +++++++a  + el  +   +   ++ae+++w e+ + +++   
  EHU00986.1  33 QGETLSLIGHSGCGKSTLLNLIA-GLTRPTSGVLLCDNREVtgpgpERAvvfqnHSLLPWLTAYQNVELAVEQVFKgkMNKAERRDWIEHNLNQVQmsh 130
                 457899*****************.788887777777777775554433444443222556666655555444444433333466666666555555777 PP

      AAA_16 107 .....................................avpelagaea....srllellkrllalls 131
                                                      a ++l++a+      r+ ++l+  ++l++
  EHU00986.1 131 amhkrpgeisggmkqrvgiaralamkprvllldepfgALDALTRAHLqdsvMRIQQALNTTIVLIT 196
                 666666666666666666666666666666666655544444444444445555555555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.2e-06    0.0013      13      41 ..      25      53 ..      20      64 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDA 41
                d+ ++++++ ++  l+G+sG GKSTll  
  EHU00986.1 25 DNVSFDLHQGETLSLIGHSGCGKSTLLNL 53
                66778888666999************965 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.2e-05     0.013       3      99 ..      39     198 ..      37     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                 EESSTTSSHHHHHHHHHHHHTHE.............................................................EEEEETTTCSSSSTT CS
         AAA   3 lyGppGtGKTllakavakelgve.............................................................fleisgsellskyvg 40 
                 l+G  G+GK++l + +a  +  +                                                             + ++++s  + k  g
  EHU00986.1  39 LIGHSGCGKSTLLNLIAGLTRPTsgvllcdnrevtgpgperavvfqnhsllpwltayqnvelaveqvfkgkmnkaerrdwiehnLNQVQMSHAMHKRPG 137
                 89****************974333444455555667777777777888888888888877787778777777777888877777777777777777999 PP

                 HHHHHHHHHHHHHHHTS.TSEEEEEET....GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA  41 esekkirelfkeakeka.kpsilfiDE....idalaksrsgseseeeervvnqLlteldgvkkk 99 
                 e +  +++ +  a++ a kp +l++DE    +dal+++     +++ +r++++L t +   +++
  EHU00986.1 138 EISGGMKQRVGIARALAmKPRVLLLDEpfgaLDALTRAH---LQDSVMRIQQALNTTIVLITHD 198
                 9999999999999999999********888889998888...7888888888888877666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     2e-05     0.022       4     111 ..      39     204 ..      37     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
      AAA_33   4 lvGlpGsGKstlaerl...lkklgavllssdt.............................................lrrrlfgtdqqskt........ 46 
                 l+G++G+GKstl+  +    +++ +vll  +                                                                    
  EHU00986.1  39 LIGHSGCGKSTLLNLIaglTRPTSGVLLCDNRevtgpgperavvfqnhsllpwltayqnvelaveqvfkgkmnkaerR------------Dwiehnlnq 125
                 79*********9986622144444888888889999999999999999999999999999996655544444443330............133444444 PP

      AAA_33  47 .........dytrvldrlyqilnelarkalsagrnvildat......nlsrrerarflklarrlgvpvrivvvetdeetl 111
                          ++ +++  ++q++ ++ar  + + r ++ld +      +++++ ++ ++++ + l+  + +++ ++de++l
  EHU00986.1 126 vqmshamhkRPGEISGGMKQRV-GIARALAMKPRVLLLDEPfgaldaLTRAHLQDSVMRIQQALNTTIVLITHDVDEAVL 204
                 4333333333445566677777.777766677777888999888887777899999999999999999999999999986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.6e-05     0.029       8      40 ..      22      55 ..      20      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.6e-05
      AAA_23  8 rsfrdqeidFskgltl.ItGpNGaGKTTildAik 40
                  ++++++d+++g tl ++G+ G+GK+T+l+ i 
  EHU00986.1 22 LALDNVSFDLHQGETLsLIGHSGCGKSTLLNLIA 55
                5678999999888775599***********9985 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.3e-05     0.093       3      21 ..      38      56 ..      36      74 .. 0.85
   2 ?   -1.9   0.0       3.1   3.5e+03      23      42 ..     181     200 ..     168     231 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                 ++G++  GKStL+n + g
  EHU00986.1 38 SLIGHSGCGKSTLLNLIAG 56
                69*************9987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.1
                 TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  23 kaivsdkpgtTrdinegrvk 42 
                 + ++++   tT+  +++ v+
  EHU00986.1 181 VMRIQQALNTTIVLITHDVD 200
                 45666666666666666555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.26       3      24 ..      38      59 ..      36      73 .. 0.80
   2 ?   -0.3   0.0       0.9     1e+03      71      93 ..     169     192 ..     119     223 .. 0.65
   3 ?   -0.6   0.0         1   1.2e+03      27      74 ..     190     241 ..     179     259 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
                EEE--SSSSHHHHHHHGGGGBS CS
       AAA_5  3 lLvGppGtgKselaerlaaaln 24
                 L+G +G+gKs+l   +a +++
  EHU00986.1 38 SLIGHSGCGKSTLLNLIAGLTR 59
                59****************9984 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.9
                 EESGGG--.HHHHHHHHHHHHSSE CS
       AAA_5  71 lDEverae.sevlnsLlslleerr 93 
                 lD ++ra+ ++ +++ ++ l++  
  EHU00986.1 169 LDALTRAHlQDSVMRIQQALNTTI 192
                 344445554444444444444444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1
                 EEEEE--TT--HHHHH--B--...........--------..G-SEEEEESG CS
       AAA_5  27 veyvqltrdtteedlkgrreik..ngttslvdsplvraar..egeilvlDEv 74 
                 +++v++t d  e+ l+  r ++  ng ++ v  +l+      ++++++ D+v
  EHU00986.1 190 TTIVLITHDVDEAVLLSDRVLMmtNGPAAQVGDILTIDLArpRSRVALADDV 241
                 5667777777777777766665554444444444443333566666666666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0013       1.4      44      66 ..      33      55 ..      22      63 .. 0.78
   2 ?    2.6   0.0     0.099   1.1e+02       3      79 ..     112     190 ..     110     205 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
       Rad17 44 kkriLLisGPsGCgkstvvkvLs 66
                + + L + G sGCgkst ++ ++
  EHU00986.1 33 QGETLSLIGHSGCGKSTLLNLIA 55
                44578899*********998776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.099
       Rad17   3 edenelWfekykPekaeelavhkkk..ie.evkewlk.advLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnp 79 
                 + e   W+e    + +   a+hk+   i+  +k+ +  a  L  +  r+LL+  P G   + +   L +  ++++++ ln 
  EHU00986.1 112 KAERRDWIEHNLNQVQMSHAMHKRPgeISgGMKQRVGiARALAMK-PRVLLLDEPFGALDALTRAHL-QDSVMRIQQALNT 190
                 567789****************98511332244444313444444.668888888887665554444.3455666666665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00044      0.49      61      84 ..     154     177 ..     111     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00044
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatl 84 
                   ++r+++LDE F+ lD+ ++a l
  EHU00986.1 154 AMKPRVLLLDEPFGALDALTRAHL 177
                 4469*************9887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   0.00028      0.31       7      27 ..      36      56 ..      31     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
      AAA_22  7 ilvvtGesGtGKTtllrrlle 27
                 l ++G+sG+GK+tll+ ++ 
  EHU00986.1 36 TLSLIGHSGCGKSTLLNLIAG 56
                5789************98765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.54     6e+02     249     264 ..      39      54 ..      31      57 .. 0.76
   2 ?   10.8   0.0   0.00014      0.16     323     385 ..     139     200 ..     127     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.54
                 EEE-TTSSHHHHHHHH CS
  ABC_ATPase 249 IvGggfhGKsTLLeAl 264
                 ++G    GKsTLL+ +
  EHU00986.1  39 LIGHSGCGKSTLLNLI 54 
                 5677788******966 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHH CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelyk 385
                  SG + q + i++al ++ ++lL+DE   A   + r ++ ++++ + ++++++ + +++++++
  EHU00986.1 139 ISGGMKQRVGIARALAMKPRVLLLDEPFGALDALTRAHLQDSVM-RIQQALNTTIVLITHDVD 200
                 59*********************************999988888.666677776666666554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.19      15      48 ..      25      59 ..      21     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFln 48
                ++v+ dl    +  liG+ ++GKS++l+++  +  
  EHU00986.1 25 DNVSFDLHQGeTLSLIGHSGCGKSTLLNLIAGLTR 59
                55666666554778**************9976655 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00032      0.36       9      35 ..      29      55 ..      22      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
                 S-EBTT-EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqsls 35
                 f + qG+++ ++g +g+Gk+++++ ++
   EHU00986.1 29 FDLHQGETLSLIGHSGCGKSTLLNLIA 55
                 6789******************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1823.63
//
Query:       EHU00987.1  [L=1357]
Description: putative nitrite reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-97  325.8   0.5    5.5e-48  163.7   0.1    2.3  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.8e-36  123.9   3.5    3.7e-16   59.4   0.0    5.2  4  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      1e-28   99.3   0.0    2.8e-28   97.9   0.0    1.8  1  Rieske_2        Rieske-like [2Fe-2S] domain
      3e-24   84.7   0.0    3.7e-11   42.8   0.0    2.7  2  Rubredoxin_C    Rubredoxin NAD+ reductase C-terminal domain
    2.8e-21   75.7   0.0      5e-21   74.9   0.0    1.4  1  NIR_SIR         Nitrite and sulphite reductase 4Fe-4S domain
    3.7e-17   62.5   0.0    1.3e-10   41.0   0.0    2.5  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    4.2e-13   49.4  12.4    8.9e-08   32.4  10.0    2.7  2  Fer2_BFD        BFD-like [2Fe-2S] binding domain
    3.7e-12   45.9   0.0      9e-12   44.7   0.0    1.7  1  NIR_SIR_ferr    Nitrite/Sulfite reductase ferredoxin-like hal
    5.2e-08   32.4   0.1      0.031   13.4   0.0    4.4  5  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    7.5e-07   28.2   7.4        1.3    7.6   0.5    6.2  7  HI0933_like     HI0933-like protein
    9.3e-07   29.0   2.9       0.25   11.6   0.1    3.9  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    3.5e-06   26.4   5.6      0.036   13.1   0.4    3.5  4  GIDA            Glucose inhibited division protein A
    4.9e-05   23.7   1.6          5    7.6   0.2    4.1  4  NAD_binding_7   Putative NAD(P)-binding
    0.00013   21.4   6.7      0.039   13.2   0.4    3.2  3  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00031   19.9  20.7       0.13   11.3   0.7    5.1  5  FAD_binding_2   FAD binding domain
    0.00047   19.6   3.7      0.017   14.5   0.7    2.3  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0013   18.1   4.7       0.43    9.8   0.5    2.4  2  FAD_binding_3   FAD binding domain
      0.004   17.1   1.2        1.2    9.0   0.1    2.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0065   16.5  20.7        0.8    9.7   0.1    7.1  8  NAD_binding_9   FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.028   14.0  15.6       0.58    9.7   1.9    5.2  6  DAO             FAD dependent oxidoreductase
      0.038   14.2   3.4         15    5.8   0.1    4.2  4  TrkA_N          TrkA-N domain
      0.068   13.1   1.6        8.2    6.3   0.2    2.6  2  LpxI_N          LpxI N-terminal domain
        1.2    7.8   3.4        7.2    5.3   0.2    2.9  3  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.1     7e-51   5.5e-48       2     278 ..       4     270 ..       3     287 .. 0.92
   2 !  160.2   0.0   8.3e-50   6.5e-47       3     279 ..     405     684 ..     403     700 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 7e-51
                  SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......HHHHCHHHHCCCCHCCTCEEEEESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias.......evvkklnqgielllgeevvkidpgkkkvklek 89 
                  +++v+G G+AG+++ +tl q     +++t++++e +  ++++lls+ l+g    a+++        ++      g++ll+ge+v ++  +++++    
   EHU00987.1   4 RLLVVGNGMAGMHMVETLLQlvpTRYDITVIGREPHGNYNRVLLSPLLAGETTVAQTLIhdrdwyhRH------GMTLLAGETVEQVNVAERTLRT-- 93 
                  689*****************9888*****************************999888877765444......7999999889999999988887.. PP

                  EECTCEEEEEESEEEE---EEE-BCTCTTC..TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2  90 kkegdeekiaydklvlAtGssprdlgipGv.aenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkel 185
                      d++ +  d+lvlAtGs+p ++ +pG   ++v    rtl++++ l   + p  +vvvGgG+ G+E Aa l   g +vtl+++ + ll r+ld ++
   EHU00987.1  94 ----DQRLLHWDRLVLATGSQPCRPSVPGSdLPHVS-TFRTLQDVDTLLAGQGP--VVVVGGGFLGIEAAAGLQAQGRQVTLIHRQSCLLdRQLDARA 184
                  ....4567999******************9556665.55***************..****************************************** PP

                  HHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 186 saaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva 278
                  ++ l ++l+++G+++ l++s  +i+ ++    v+l dg++++a+ vv+a+Gv+p  +l+ +++g+++  ++gi+vd++lr+ + giya+G ++
   EHU00987.1 185 GELLLAQLRARGIRCELNASLAAIRTDS----VILHDGRVLAARQVVMAIGVQPAIALA-QAAGIPC--QRGILVDRQLRSAHAGIYAVGECC 270
                  *********************8888666....8*************************9.*******..99*********************9 PP

  == domain 2  score: 160.2 bits;  conditional E-value: 8.3e-50
                  EEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias.evvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  ++v+G G+  +++ ++l      + + v+++++e++  ++++ ls+ ++g  + +  +  e++   ++ iel+ g  v +id++++ + +     + +
   EHU00987.1 405 LAVVGHGMVSHHFLEQLVDrnlhQHYHVVVYGEERYQAYDRVHLSEYFTGKTATQLSLVsEEFF-AQNAIELRSGCRVEAIDRQQRSLRD-----SAG 496
                  5799999999999999998888669*********************999877777555555533.33459*****99********99999.....678 PP

                  EEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaalee 191
                  +++a dklvlAtGs+++ +++pG   + +++ rtld+ +a+    ++ +r vv+GgG+ G+E A al++lg e+++ve ++rl+  +ld+  + +l++
   EHU00987.1 497 RELAWDKLVLATGSRAFVPPVPGHDGERCFVYRTLDDLDAIAACARQsQRGVVIGGGLLGLEAANALKQLGLETHVVEFAPRLMaVQLDEGGALMLRQ 594
                  89**********************99999999***********99999999**********************************99*********** PP

                  HHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC..T CS
                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Pyr_redox_2 192 alekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva..g 279
                  ++ + Gv+v++ ++ ++i ++++ +l ++  dg e+++dlv++++G+rp++el+ +++ + + +rggi ++++++t++ +iyaiG +a  +
   EHU00987.1 595 KIDALGVTVHTAKQTEQIASQPDgSLVLHFADGGELATDLVLFSAGIRPRNELA-RSADISVGPRGGITINDHCQTSDSDIYAIGECAlwN 684
                  ***********************8888***************************.*********************************642 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.079        62       1      32 [.       4      38 ..       4      46 .. 0.87
   2 !   59.4   0.0   4.8e-19   3.7e-16       2      70 ..     143     212 ..     142     218 .. 0.96
   3 ?    1.8   0.0      0.46   3.6e+02      41      71 ..     459     489 ..     405     494 .. 0.78
   4 !   54.5   0.1   1.6e-17   1.3e-14       2      73 ..     547     620 ..     546     627 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.079
                EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg...kkVtvversd 32
                +++vvG G  g+ + ++l +l     ++tv+ r++
  EHU00987.1  4 RLLVVGNGMAGMHMVETLLQLVptrYDITVIGREP 38
                689***************88776668999999886 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 4.8e-19
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegse 70 
                 vvvvGgG++g+E+A+ l++ g +Vt+++r++ ll r+lD+ a+++l  +l+++gi+  ln+++++i++++
  EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHRQSCLLdRQLDARAGELLLAQLRARGIRCELNASLAAIRTDS 212
                 8*****************************************************************9876 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsed 71 
                 ++s + +e + +n ie++ + +ve+i+ +++
  EHU00987.1 459 QLSLVSEEFFAQNAIELRSGCRVEAIDRQQR 489
                 4555566777888999999999999998776 PP

  == domain 4  score: 54.5 bits;  conditional E-value: 1.6e-17
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.E CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg.v 73 
                  vv+GgG++glE+A+al++lg +++vve +++l+  +lDe  + +l++k+ ++g++v++ +++e+i  ++dg +
  EHU00987.1 547 GVVIGGGLLGLEAANALKQLGLETHVVEFAPRLMaVQLDEGGALMLRQKIDALGVTVHTAKQTEQIASQPDGsL 620
                 69*****************************************************************9999833 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   3.6e-31   2.8e-28       2     104 .]    1245    1346 ..    1244    1346 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 3.6e-31
                  EEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEEST CS
    Rieske_2    2 wvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledeevslkvypvrved 98  
                  w ++c+le++++e g+ a ++   +alfrl  ++ yA+++++p sea+vlsrG++gd +ge+vv sPlykq+ +L++G+ l++++++l+ +pv++ed
  EHU00987.1 1245 WSEICPLEAIPPEAGIGARLGSVRIALFRL-GDDCYALEDREPGSEASVLSRGILGDVAGEPVVISPLYKQRVRLRDGQSLDNPQHQLRCWPVKLED 1340
                  9*****************************.999*************************************************************** PP

                  SEEEEE CS
    Rieske_2   99 gkvevr 104 
                  g+v+v+
  EHU00987.1 1341 GQVWVA 1346
                  ****95 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   4.7e-14   3.7e-11       3      64 ..     309     367 ..     308     372 .. 0.92
   2 !   39.1   0.0   6.8e-13   5.3e-10       2      67 ..     718     786 ..     718     789 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 4.7e-14
                   -EEEETTEEEEEES--TT---SEEEEEE-SS-..EEEEEEETTEEEEEEEES-HHHHHHHHH CS
  Rubredoxin_C   3 tiLkvsgidlfSvGdieeeekaeelveedkekgkYkklfikngklvGAiliGDtkesaklkk 64 
                   t Lkvsgi+lfS+Gd+ e     ++   d   g Y++lf+k+g+l G  l+GD ++s  l++
    EHU00987.1 309 TRLKVSGISLFSAGDVREAP---SVISFDPIAGHYRRLFLKDGRLKGVLLYGDCQQSGALLN 367
                   78****************77...9999****************************9987766 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 6.8e-13
                   --EEEETTEEEEEES--TT---.SEEEEEE-SS-..EEEEEEE..TTEEEEEEEES-HHHHHHHHHHHH CS
  Rubredoxin_C   2 vtiLkvsgidlfSvGdieeeek.aeelveedkekgkYkklfik..ngklvGAiliGDtkesaklkklie 67 
                   +t+Lk +g+d+ S+Gd  ++   + ++ + ++ kg+Ykk+++   n +l G +l+GD++++a+l++ + 
    EHU00987.1 718 STKLKLLGVDVASFGDAHGKTPgSLSYHWANGPKGIYKKIVVSanNTRLLGGVLVGDSSDYATLLQTML 786
                   699*****************999*******************633679**************9998875 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   6.4e-24     5e-21       2     151 ..    1030    1166 ..    1029    1173 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 6.4e-24
                  SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR    2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakkt 98  
                  g++lr+v++c+g+++c+  + D+t +a ++e    ++y+  + P+K K+avsgc + c++++++Dig++++++     g+n++v G+ g +++ ++ 
  EHU00987.1 1030 GKSLRTVKSCVGSTWCRYGVQDSTAFAIELE----NRYKGLRAPHKIKMAVSGCTRECAEAQSKDIGVIATEN-----GWNLYVCGNGGMKPRHAEL 1117
                  7899***************************....9*************************************.....******************* PP

                  EEEEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHH..HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
     NIR_SIR   99 sarlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverl..GvekFrekv 151 
                  +a    ++++ ++++v+ i+ +y     r++ + +R   +++++  G++ +re+v
  EHU00987.1 1118 FA--SDLDDDTLIRYVDRILMFYV----RTADRLQRTSVWMDNMegGLDYLREVV 1166
                  **..6899999*************....**************9977888888877 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.7e-13   1.3e-10      83     281 ..      60     246 ..      48     267 .. 0.77
   2 !   19.0   0.0   8.5e-07   0.00066      89     305 .]     466     678 ..     449     678 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1.7e-13
  Pyr_redox_3  83 aleYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefhkya..gqkvvViGgknSav 177
                   l + r   +++ +   + e+Ve+v+ ++   +++t+++ ++ +++++AtG   +P ++++pG++  +v  +++ ++++ +   +  vvV+Gg+  ++
   EHU00987.1  60 TLIHDRDWYHRHGMTLLAGETVEQVNVAE--RTLRTDQRLLHWDRLVLATGS--QPCRPSVPGSDLpHVSTFRTLQDVDTLLagQGPVVVVGGGFLGI 153
                  55666667777777888889999999876..5899****************9..***********5355556666666654444678*********** PP

  Pyr_redox_3 178 DaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                  +aA  l ++g +Vt+++r+s + +++      l ++  + l + ++ + i+ + na++ +i++++    v  +dg+ + +  +vv+a+G +p + + +
   EHU00987.1 154 EAAAGLQAQGRQVTLIHRQSCLLDRQ------LDARAGELLLAQLRARGIRCELNASLAAIRTDS----VILHDGRVL-AARQVVMAIGVQPAIALAQ 240
                  ********************988885......66667776666566656*************874....456677665.56899*********99999 PP

  Pyr_redox_3 276 kslfel 281
                  ++++  
   EHU00987.1 241 AAGIPC 246
                  877765 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 8.5e-07
  Pyr_redox_3  89 evaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGee.klvkhyskvkefhkya.....gqkvvViGgknSavDaA 180
                  e  +++ ++ +  ++Ve++++++++ + ++  +++  +k+++AtG   +  ++ +pG + + + +y++ ++++ +a      q+ vViGg+  + +aA
   EHU00987.1 466 EFFAQNAIELRSGCRVEAIDRQQRSLR-DSAGRELAWDKLVLATGS--RAFVPPVPGHDgERCFVYRTLDDLDAIAacarqSQRGVVIGGGLLGLEAA 560
                  556778899999999999999987665.555669999********9..7778888888844799***99988766422233799************** PP

  Pyr_redox_3 181 lelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeik.ekeeeykvktedgkkvevkddvvlatGykpdlsflkks 277
                    l + g e +vv     + + + d    l  + ++++++l     ++v++ +++++i  +++ +  ++++dg ++ + d v++  G +p  ++ +++
   EHU00987.1 561 NALKQLGLETHVVEFAPRLMAVQLDEGGAL--MLRQKIDAL----GVTVHTAKQTEQIAsQPDGSLVLHFADGGELAT-DLVLFSAGIRPRNELARSA 651
                  ***************998888776665544..677777775....499**********8467889999*****99876.777777******9999998 PP

  Pyr_redox_3 278 lfeldedgrpvlteeteetnvpglflaG 305
                   ++    g ++++++  +t  ++++ +G
   EHU00987.1 652 DISVGPRGGITINDHC-QTSDSDIYAIG 678
                  8888888888887654.44456666665 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4  10.0   1.1e-10   8.9e-08       2      49 ..     822     868 ..     821     869 .. 0.96
   2 !   16.7   0.0   9.1e-06    0.0071       2      50 ..     883     931 ..     883     932 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.1e-10
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiL 49 
                 VC+C++v++g+I +a+ + g  +++++k  tka tgCggC   +++++
  EHU00987.1 822 VCSCHNVSKGDICQAV-QSGCGEMASIKSCTKAATGCGGCAALVKQVM 868
                 9***************.889************************9987 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9.1e-06
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 +C+ ++ +++ + d ir +g++t++e+ +  + g gC  C+p +  +La
  EHU00987.1 883 ICEHFAYSRQALYDLIRINGIKTFDELLASHGRGCGCEVCKPLVGSLLA 931
                 788899**********7799************************99998 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.2e-14     9e-12       3      69 .]     958    1021 ..     956    1021 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.2e-14
  NIR_SIR_ferr    3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLaea 69  
                    qkdg+  y+v  rvp+G it++ l a+ ++a +y+  + ++T  Q + l+g + ++l++i+e L ea
    EHU00987.1  958 QKDGT--YSVVPRVPGGEITPQGLIAIGEVAARYD-LYTKITGGQRIDLFGARLDQLPAIWETLLEA 1021
                    89987..8***************************.****************************985 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.059        46     192     226 ..       3      38 ..       1      45 [. 0.88
   2 !   13.4   0.0     4e-05     0.031     132     226 ..      83     173 ..      71     181 .. 0.75
   3 ?   -0.2   0.0      0.57   4.4e+02     144     162 ..     218     236 ..     202     245 .. 0.85
   4 ?   -1.5   0.0       1.4   1.1e+03     190     245 ..     401     456 ..     395     466 .. 0.71
   5 !    8.9   0.0   0.00096      0.75     141     214 ..     493     567 ..     466     587 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.059
  K_oxygenase 192 kriaVvGsGqSaaeifedllrrqkk.velklvtrse 226
                  +r++VvG G  + +++e ll+  ++ ++++++ r++
   EHU00987.1   3 QRLLVVGNGMAGMHMVETLLQLVPTrYDITVIGREP 38 
                  799*******************77559***999876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4e-05
  K_oxygenase 132 lltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee...llakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                   ++v  ++ + +++ l+  +lvl++G++p+ P+v  +      + H s++ + ++    l+ +  ++VvG+G  + e +  l ++ +  +++l+ r++
   EHU00987.1  83 QVNVAERTLRTDQRLLHWDRLVLATGSQPCRPSVPGSD-----LPHVSTFRTLQDVdtlLAGQGPVVVVGGGFLGIEAAAGLQAQGR--QVTLIHRQS 173
                  4556666656667888999*************997754.....4455554444433335788899**************99998877..788888765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.57
  K_oxygenase 144 eeelearnlvlgvGtepki 162
                   + l ar++v+++G +p+i
   EHU00987.1 218 GRVLAARQVVMAIGVQPAI 236
                  57789************98 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.4
  K_oxygenase 190 akkriaVvGsGqSaaeifedllrrqkkvelklvtrsea.leplddspfvneifsPey 245
                  +k  +aVvG G    + +e+l++r+ +++ ++v+ +e+ +++ d  ++  e+f+ + 
   EHU00987.1 401 TKPVLAVVGHGMVSHHFLEQLVDRNLHQHYHVVVYGEErYQAYDRVHL-SEYFTGKT 456
                  566689******************777666666655540444454444.77777665 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.00096
  K_oxygenase 141 egeeeelearnlvlgvGtepkiPevleklegkervvHss..eylerkee.llakkriaVvGsGqSaaeifedllrrq 214
                  +   +el   +lvl++G+++ +P+v  +    er++     + l  +++  ++++r +V+G+G  + e ++ l +  
   EHU00987.1 493 DSAGRELAWDKLVLATGSRAFVPPVPGHDG--ERCFVYRtlDDLDAIAAcARQSQRGVVIGGGLLGLEAANALKQLG 567
                  34456777789*************998765..44443330134444433789999999******9999998887764 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.45   3.5e+02     121     165 ..      70     110 ..      56     120 .. 0.80
   2 !    7.6   0.5    0.0017       1.3       3      33 ..     143     173 ..     141     185 .. 0.91
   3 ?    0.9   0.0      0.19   1.5e+02     114     164 ..     187     232 ..     182     238 .. 0.85
   4 ?   -3.1   0.0       3.1   2.4e+03     375     392 ..     260     277 ..     255     279 .. 0.86
   5 !    6.2   0.0    0.0046       3.6      99     166 ..     449     512 ..     407     527 .. 0.75
   6 ?    3.4   0.2     0.032        25       4      34 ..     548     578 ..     545     582 .. 0.90
   7 !    6.7   0.0    0.0032       2.5     114     163 ..     591     640 ..     589     645 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.45
                  HHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 121 eagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  + g++l   ++v++v+  e    +++t +++ l+ d+lvlAtG++
   EHU00987.1  70 RHGMTLLAGETVEQVNVAER---TLRT-DQRLLHWDRLVLATGSQ 110
                  66778888888999966444...5888.899************86 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekak 33 
                  v+v+GgG  G+ aA+ ++++g++V+l+ +++
   EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHRQS 173
                  8**************************8875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  +ll++l+++g++++l+ +++++  ++d+   v +++++ l+a+++v+A+G 
   EHU00987.1 187 LLLAQLRARGIRCELNASLAAI--RTDS---VILHDGRVLAARQVVMAIGV 232
                  7999******************..4455...334479***********995 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.1
                  STTEEE-GGGBSEEE-TT CS
  HI0933_like 375 vpgLffaGEvlDvegvtG 392
                    g++ +GE+ +++g t 
   EHU00987.1 260 HAGIYAVGECCEISGETF 277
                  579************985 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0046
                  TEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS CS
  HI0933_like  99 grlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlS 166
                     F+ + +a+++  + ++   ++ ++lr  ++v+++++++ +   ++ + ++el+ dklvlAtG+ +
   EHU00987.1 449 SEYFTGK-TATQLSLVSEEFFAQNAIELRSGCRVEAIDRQQRS---LRDSAGRELAWDKLVLATGSRA 512
                  5556655.67777667777788999************665555...555579*************987 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.032
                  EEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   4 iviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  +viGgG  Gl aA ++++ g ++ ++e a++
   EHU00987.1 548 VVIGGGLLGLEAANALKQLGLETHVVEFAPR 578
                  8************************997765 PP

  == domain 7  score: 6.7 bits;  conditional E-value: 0.0032
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  +l +++++ gv++++ ++ ++++++ dg++ ++  +++el++d ++++ G
   EHU00987.1 591 MLRQKIDALGVTVHTAKQTEQIASQPDGSLVLHFADGGELATDLVLFSAG 640
                  899*******************************99****9999998877 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.13        99       1      29 [.       7      38 ..       7      39 .. 0.85
   2 !   11.3   0.6   0.00039       0.3       1      29 [.     145     173 ..     145     175 .. 0.93
   3 !   11.6   0.1   0.00032      0.25       1      30 [.     549     578 ..     549     581 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.13
                   EE--SHHHHHHHHHHHCC...TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllekrd 29
                   +vG G++G+ +  +L +    ++d++++ + +
     EHU00987.1  7 VVGNGMAGMHMVETLLQLvptRYDITVIGREP 38
                   8*************999555699**9997765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00039
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    +vG+G+ G  aA+ L+ +g++v+l+ +++
     EHU00987.1 145 VVGGGFLGIEAAAGLQAQGRQVTLIHRQS 173
                    8***********************98776 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00032
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    ++G+Gl Gl aA +L++ g++ +++e ++r
     EHU00987.1 549 VIGGGLLGLEAANALKQLGLETHVVEFAPR 578
                    8***********************997776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.1   6.3e-05     0.049       2      30 ..     143     171 ..     142     194 .. 0.89
   2 ?   -1.7   0.0       1.5   1.2e+03     128     150 ..     210     232 ..     193     243 .. 0.84
   3 ?   -2.2   0.0       2.1   1.6e+03     108     150 ..     470     510 ..     458     515 .. 0.75
   4 !   13.1   0.4   4.6e-05     0.036       3      29 ..     548     581 ..     547     614 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.3e-05
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 v+V+GgG  G+eAA+ +   G +v+Li  
  EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHR 171
                 9*************************943 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
                 EEEEEETTS-EEEECEEEE--TT CS
        GIDA 128 vkgvvtedgetikakavviatGt 150
                 +  v+++dg+++ a++vv+a G 
  EHU00987.1 210 TDSVILHDGRVLAARQVVMAIGV 232
                 5679*****************96 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.1
                 STTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 108 epnleiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 ++ +e++++   e i+  ++ + ++ + g+++  ++ v+atG+
  EHU00987.1 470 QNAIELRSGCRVEAID--RQQRSLRDSAGRELAWDKLVLATGS 510
                 5666776664333323..6788899999**************8 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 4.6e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEE.......E CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi.......t 29 
                 +ViGgG+ G+eAA a+++lG+++  +       +
  EHU00987.1 548 VVIGGGLLGLEAANALKQLGLETHVVefaprlmA 581
                 7**********************99855555442 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0096       7.5       8      55 ..       3      91 ..       1     113 [. 0.65
   2 !    7.6   0.2    0.0064         5       9      45 ..     142     177 ..     138     255 .. 0.71
   3 ?   -1.4   0.0       4.1   3.2e+03      11      49 ..     406     447 ..     400     511 .. 0.64
   4 ?    4.9   0.1     0.046        36       7      37 ..     544     574 ..     539     630 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0096
  NAD_binding_7  8 kkvlvvGgGevAarkvrklle...agakvtvvapevkeele......................................elvklaeeel 55
                   ++ lvvG G  +++ v++ll+   +  ++tv+  e + + +                                      e+v++ae++l
     EHU00987.1  3 QRLLVVGNGMAGMHMVETLLQlvpTRYDITVIGREPHGNYNrvllspllagettvaqtlihdrdwyhrhgmtllagetvEQVNVAERTL 91
                   789**************99985557799***9999655444555666666655565555656666666666666665555555555555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0064
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapevkeele 45 
                     v+vvGgG ++ + +  l ++g +vt++  +++   +
     EHU00987.1 142 PVVVVGGGFLGIEAAAGLQAQGRQVTLIHRQSCLL-D 177
                    599*************************9996333.3 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.1
  NAD_binding_7  11 lvvGgGevAarkvrklleag....akvtvvapevkeeleelvk 49 
                     vvG G v  + +++l++ +     +v+v+ +e  +++ ++v+
     EHU00987.1 406 AVVGHGMVSHHFLEQLVDRNlhqhYHVVVYGEER-YQAYDRVH 447
                    4888888888888777775533335677777773.22223333 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.046
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvva 37 
                     ++ +v+GgG ++++ ++ l + g + +vv 
     EHU00987.1 544 SQRGVVIGGGLLGLEAANALKQLGLETHVVE 574
                    57889*******************9999974 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.51   3.9e+02      30      50 ..       4      24 ..       2      33 .. 0.88
   2 !    9.0   0.6     0.001      0.78      28      64 ..     140     176 ..     126     241 .. 0.83
   3 !   13.2   0.4     5e-05     0.039      30      69 ..     546     586 ..     535     618 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.51
                 EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakgl 50
                 + lv+G G+aG++ ++t  +l
   EHU00987.1  4 RLLVVGNGMAGMHMVETLLQL 24
                 689**********99988776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparl 64 
                  ++ v+v+GgG  G++A+a  ++ g +Vt++  ++  l
   EHU00987.1 140 QGPVVVVGGGFLGIEAAAGLQAQGRQVTLIHRQSCLL 176
                  456*************************998776544 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 5e-05
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH.HHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparle.qles 69 
                  + +viGgG  Gl+A+++ k+lg ++ v++  p+ +  ql++
   EHU00987.1 546 RGVVIGGGLLGLEAANALKQLGLETHVVEFAPRLMAvQLDE 586
                  669*************************9998865425555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       3.8   2.9e+03       3      12 ..       6      15 ..       5      16 .. 0.91
   2 !    7.9   2.2    0.0018       1.4       2      30 ..     143     171 ..     142     175 .. 0.93
   3 !    5.9   0.1    0.0072       5.6     372     402 ..     246     270 ..     187     279 .. 0.74
   4 !   11.3   0.7   0.00017      0.13       3      33 ..     548     578 ..     547     608 .. 0.85
   5 ?    5.4   0.0      0.01       8.1     373     403 ..     658     682 ..     638     696 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.8
                   EEE--SHHHH CS
  FAD_binding_2  3 iViGsGlAGL 12
                   +V+G G+AG+
     EHU00987.1  6 LVVGNGMAGM 15
                   8********9 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0018
                    EEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvek 30 
                    v+V+G+G+ G  AA+ ++ +G++v+++  
     EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHR 171
                    9************************9965 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0072
                    ES-EEEBETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 372 tmgGvetdengrvldadgqpipGLYAaGeva 402
                    ++ G+ +d ++r       +++G YA+Ge+ 
     EHU00987.1 246 CQRGILVDRQLRS------AHAGIYAVGECC 270
                    4556666666666......**********97 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00017
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                    +ViG+Gl GL AA ++++ Gl++ vve +++
     EHU00987.1 548 VVIGGGLLGLEAANALKQLGLETHVVEFAPR 578
                    8*************************97775 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.01
                    S-EEEBETTSBESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 373 mgGvetdengrvldadgqpipGLYAaGevaa 403
                     gG+++++++++        ++ YA+Ge+a 
     EHU00987.1 658 RGGITINDHCQT------SDSDIYAIGECAL 682
                    59**********......8899*******93 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.7   2.2e-05     0.017       2      34 ..     143     175 ..     142     175 .. 0.95
   2 ?    5.7   0.1      0.01       8.2       3      32 ..     548     577 ..     548     579 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvl 34 
                   vvVvGGg  G+ AA     +G++v L++++ +l
    EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHRQSCL 175
                   9***************************99876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveerg 32 
                   vV+GGg+ G+ AA a ++ G ++ +ve  +
    EHU00987.1 548 VVIGGGLLGLEAANALKQLGLETHVVEFAP 577
                   8*************************9766 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.3   0.00061      0.48       3      34 ..     142     173 ..     140     194 .. 0.91
   2 !    9.8   0.5   0.00055      0.43       5      31 ..     548     574 ..     546     581 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00061
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +V++VG+G  G+ +a  L+ +G +v+l+ ++s
     EHU00987.1 142 PVVVVGGGFLGIEAAAGLQAQGRQVTLIHRQS 173
                    69***************************987 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00055
                    EEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlve 31 
                    +++G+G+ Gl +a+ L++ G ++++ve
     EHU00987.1 548 VVIGGGLLGLEAANALKQLGLETHVVE 574
                    69***********************98 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0015       1.2       2      45 ..     143     186 ..     142     216 .. 0.77
   2 ?    5.9   0.2     0.014        11       4      38 ..     549     583 ..     547     616 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieks 45 
                 v v+G G +G + aa + ++g +V+l+ +++  l++ l++ + +
  EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHRQSCLLDRQLDARAGE 186
                 88***************************999999988776653 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.014
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealeka 38 
                 viG G++G + a+++ + gle+++v+ +++ ++  
  EHU00987.1 549 VIGGGLLGLEAANALKQLGLETHVVEFAPRLMAVQ 583
                 9************************9988766555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1     0.001       0.8       2      37 ..       7      40 ..       6      89 .. 0.88
   2 ?    1.2   0.0      0.41   3.2e+02     134     155 ..      88     109 ..      68     110 .. 0.76
   3 ?   -0.1   0.5       1.1   8.2e+02       1      20 [.     144     163 ..     144     199 .. 0.84
   4 ?    4.9   0.1     0.031        24     135     155 ..     212     232 ..     187     233 .. 0.86
   5 ?    0.4   0.0      0.71   5.6e+02       1      31 [.     406     435 ..     406     450 .. 0.77
   6 ?    5.3   0.0     0.023        18     123     155 ..     480     510 ..     437     511 .. 0.65
   7 ?   -1.1   0.2       2.2   1.7e+03       1      19 [.     548     566 ..     548     578 .. 0.81
   8 ?    2.7   0.0      0.15   1.1e+02     114     154 ..     598     640 ..     574     642 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.001
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   +vG G++G+ ++e Ll+    +++ +it++ ++++g
     EHU00987.1  7 VVGNGMAGMHMVETLLQLV--PTRYDITVIGREPHG 40
                   8*****************8..*********888776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.41
  NAD_binding_9 134 qavlladgaslaadaVvLAlGh 155
                     + l +d++ l+ d++vLA+G 
     EHU00987.1  88 ERTLRTDQRLLHWDRLVLATGS 109
                    34567899999**********6 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.1
  NAD_binding_9   1 aivGaGprGlavlerLlara 20 
                    ++vG+G+ G+ +++ L a+ 
     EHU00987.1 144 VVVGGGFLGIEAAAGLQAQG 163
                    69***********9998884 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.031
  NAD_binding_9 135 avlladgaslaadaVvLAlGh 155
                     v+l+dg+ laa++Vv+A+G 
     EHU00987.1 212 SVILHDGRVLAARQVVMAIGV 232
                    6899***************96 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.71
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlf 31 
                    a+vG G+    +le+L++r+  +++ ++ ++
     EHU00987.1 406 AVVGHGMVSHHFLEQLVDRN-LHQHYHVVVY 435
                    79*****************7.6666777666 PP

  == domain 6  score: 5.3 bits;  conditional E-value: 0.023
  NAD_binding_9 123 evvdleeradgqavlladgaslaadaVvLAlGh 155
                    +v+++++++  + ++ + g++la d++vLA+G 
     EHU00987.1 480 RVEAIDRQQ--RSLRDSAGRELAWDKLVLATGS 510
                    455555443..368999**************95 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 2.2
  NAD_binding_9   1 aivGaGprGlavlerLlar 19 
                    +++G+G  Gl ++++L + 
     EHU00987.1 548 VVIGGGLLGLEAANALKQL 566
                    69***********999776 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.15
  NAD_binding_9 114 gvtvevhra.evvdleeradgq.avlladgaslaadaVvLAlG 154
                     + v+vh+a + ++++ ++dg   ++ adg +la d V    G
     EHU00987.1 598 ALGVTVHTAkQTEQIASQPDGSlVLHFADGGELATDLVLFSAG 640
                    45688886647889*******846777**********988776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.5     2e+03     158     174 ..      70      86 ..       5     120 .. 0.56
   2 ?    9.7   1.9   0.00074      0.58       2      29 ..     143     172 ..     142     185 .. 0.94
   3 ?    1.4   0.2      0.25   1.9e+02     151     206 ..     187     237 ..     178     268 .. 0.72
   4 ?    4.8   0.0     0.022        17     156     204 ..     468     512 ..     457     530 .. 0.77
   5 ?    3.2   0.4     0.069        53       3      27 ..     548     574 ..     547     591 .. 0.90
   6 ?   -2.5   0.0       3.7   2.9e+03     152     207 ..     592     647 ..     587     665 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.5
                 HTT-EEEESECEEEEEE CS
         DAO 158 alGveilegtevtglee 174
                 ++G ++l g++v+ ++ 
  EHU00987.1  70 RHGMTLLAGETVEQVNV 86 
                 34555555555555533 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00074
                 EEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekg 29 
                 vv++GGG  G+ +A  L+++g  Vtl+ ++
  EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGrqVTLIHRQ 172
                 9****************99999*****998 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.25
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.H CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.l 206
                  l+++++a+G+++ +++   +++ +    + +    +g++ aa++vV+a G++    
  EHU00987.1 187 LLLAQLRARGIRCELNASLAAIRTD---SVIL---HDGRVLAARQVVMAIGVQPAiA 237
                 588999**********999889442...2222...22777577********997632 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.022
                 HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGH CS
         DAO 156 aealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGaws 204
                 ++++++e++ g++v++++++      + r+++g++ a d++V+a+G  +
  EHU00987.1 468 FAQNAIELRSGCRVEAIDRQ---QRSL-RDSAGRELAWDKLVLATGSRA 512
                 78999************876...5677.444487767899******653 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.069
                 EEECTSHHHHHHHHHHHHTT..EEEEE CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtlle 27 
                 v+iGGG  Gl +A +L + g  + ++e
  EHU00987.1 548 VVIGGGLLGLEAANALKQLGleTHVVE 574
                 8***************88799988887 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 3.7
                 HHHHHHHTT-EEEESECEEEE.EEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 152 laraaealGveilegtevtgl.eeedgkvwgverttp.gendaadavVnaaGawsd.ll 207
                 l++++ alGv++++  + + + +++dg ++     ++ ge  a d v  +aG+  + +l
  EHU00987.1 592 LRQKIDALGVTVHTAKQTEQIaSQPDGSLVLH--FADgGEL-ATDLVLFSAGIRPRnEL 647
                 67789999999999988888844465443333..3343554.45889999998766644 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.8   2.1e+03       2      27 ..       6      34 ..       5      39 .. 0.76
   2 ?    5.8   0.1      0.02        15       1      30 [.     143     172 ..     143     184 .. 0.89
   3 ?    1.9   0.0      0.33   2.6e+02       2      39 ..     406     445 ..     405     466 .. 0.76
   4 ?    3.7   0.1     0.094        73       2      33 ..     548     579 ..     547     596 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.8
                EEES-SHHHHHHHHHHHHTT...EEEEEE CS
      TrkA_N  2 iiiGlGrvGrslaeeLsegg...kdvvvi 27
                +++G G  G++++e+L +      d++vi
  EHU00987.1  6 LVVGNGMAGMHMVETLLQLVptrYDITVI 34
                79**************9844456346766 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.02
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkd 30 
                 ++++G G +G + a  L+++g++v++i ++
  EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQGRQVTLIHRQ 172
                 79*****************8879***9875 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.33
                 EEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelre 39 
                 +++G+G v  + +e+L +++  +++ v+   eer + + +
  EHU00987.1 406 AVVGHGMVSHHFLEQLVDRNlhQHYHVVVYGEERYQAYDR 445
                 79****************7778668888888888877654 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.094
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeer 33 
                 ++iG G +G + a+ L++ g +   v++  ++ 
  EHU00987.1 548 VVIGGGLLGLEAANALKQlGLE-THVVEFAPRL 579
                 89****************7775.9999988865 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.023        18       4      33 ..     144     173 ..     143     192 .. 0.85
   2 ?    6.3   0.2     0.011       8.2       3      33 ..     547     577 ..     545     587 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.023
      LpxI_N   4 liAGsGrlPllvaeaakaagrevvvvaleg 33 
                 ++ G+G l +++a++++a+gr+v +++ + 
  EHU00987.1 144 VVVGGGFLGIEAAAGLQAQGRQVTLIHRQS 173
                 578********************9997665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
      LpxI_N   3 gliAGsGrlPllvaeaakaagrevvvvaleg 33 
                 g++ G+G l l++a+a+k+ g e++vv +  
  EHU00987.1 547 GVVIGGGLLGLEAANALKQLGLETHVVEFAP 577
                 7888***********************9875 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.96   7.5e+02       2      34 ..       5      37 ..       4      43 .. 0.85
   2 ?    5.3   0.2    0.0092       7.2       2      33 ..     143     171 ..     142     175 .. 0.89
   3 ?    1.7   0.2      0.12        94       3      32 ..     548     574 ..     546     642 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.96
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvese 34
                    +++vG G aG     +l + +  ++++t++  e
      EHU00987.1  5 LLVVGNGMAGMHMVETLLQLVPTRYDITVIGRE 37
                    78********99999999999899*****9776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0092
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlves 33 
                     +v+vGGG  G  aAa l+ ++    +vtl+  
      EHU00987.1 143 VVVVGGGFLGIEAAAGLQAQG---RQVTLIHR 171
                     8*******************9...56999975 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.12
                     EEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   3 vivGGGtaGwlaAaalakalkgklevtlve 32 
                     v++GGG  G  aA+al++ +   le  +ve
      EHU00987.1 548 VVIGGGLLGLEAANALKQLG---LETHVVE 574
                     799*************9998...5566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.98u 0.26s 00:00:01.24 Elapsed: 00:00:00.43
# Mc/sec: 9498.07
//
Query:       EHU00988.1  [L=873]
Description: assimilatory nitrate reductase large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-75  252.7   0.0    9.1e-75  252.2   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    2.5e-25   88.7   0.0    5.2e-25   87.6   0.0    1.6  1  Molydop_binding  Molydopterin dinucleotide binding domain
      7e-17   61.2   1.9      7e-17   61.2   1.9    2.3  3  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    7.9e-11   42.1   2.0    1.9e-10   40.9   2.0    1.7  1  Fer2_BFD         BFD-like [2Fe-2S] binding domain
  ------ inclusion threshold ------
      0.022   14.5   0.1      0.072   12.9   0.1    1.8  1  McyA_C           Microcystin synthetase C terminal


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.2   0.0   2.5e-78   9.1e-75      18     431 ..      64     475 ..      62     476 .. 0.89

  Alignments for each domain:
  == domain 1  score: 252.2 bits;  conditional E-value: 2.5e-78
                    EE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHHCCCCCTTTS-SS-CCGG CS
  Molybdopterin  18 vrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qtigsdsrsnyessnpledl 109
                    +rvs + Al++ a+ l+++i++ygp++va+++sg+l+ +e +++++kl++ + g  ++++d++ +l++asa+    +++g+d +  ++++    dl
     EHU00988.1  64 QRVSMEAALDAAADGLRRIIDTYGPEAVAFYGSGQLL-TEDYYVANKLMKGFLG--VANIDTNSRLCMASAVtgykRAFGADAV-PCCYE----DL 151
                    5788889******************************.****************..*************************955.77777....** PP

                    GG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC..-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCC CS
  Molybdopterin 110 ensdliilwGsNvreerpilnarirkaalkkk..akvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkeflrkytygkeetdm 203
                    ++++++il+GsN ++ +p+l  r+ +a  +    ++v+vi+pr +++ +fad++l+++pg+d al+ ++ h++ q +  d  +   +  g + t +
     EHU00988.1 152 DQAEVVILVGSNAAWAHPVLFQRLKQAKTQ-RpeMQVVVIDPRRTASCEFADLHLPLRPGSDPALFSGLLHWLEQHGGIDA-TMLPHLDGVDTTLQ 245
                    ********************5555555444.258************99*********************************.44444445555555 PP

                    CCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCC CS
  Molybdopterin 204 pllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvll 299
                       +     +++ +++  + +  +  +++  + + + ++ +g+n++q+g+++ +a++n +ll g++g+pg+g+++l+Gq++++g +++vg l+ +l
     EHU00988.1 246 AARQWDCATVAAHCDISHDMIAAF-YRLFTRHERVLTLWCMGINQSQSGSDNNNAILNAHLLSGKIGRPGCGPFSLTGQPNAMG-GREVGGLANQL 339
                    555555554566666555555555.556666677**************************************************.*********** PP

                    CCCCCTT...HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCS.SHHHHTSSEEEEBE- CS
  Molybdopterin 300 svkslke...ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrl.tstalyaDiiLPaat 391
                     ++++ +        + + +  +   p+ ++v   ++++++ +k+++++g+np v+ ++ n++ +al  + lv+v+d+   t+t  +a+i+LPa  
     EHU00988.1 340 AAHMSFTaedCDRLQRFWRSPRMARQPGLTAVDLFDAIERGAIKAVWIMGTNPAVSMPEGNRIARALAACPLVIVSDVLAqTDTTAFAHILLPAQG 435
                    ******99984444555666688888********************************************************************** PP

                    CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 392 wyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLak 431
                    w Ek++++tn+e+r+++ +++++p+geak+dw+ + ++a+
     EHU00988.1 436 WGEKNGTVTNSERRISRQRAFMPPAGEAKPDWWLFAQVAQ 475
                    ***********************************99986 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   1.5e-28   5.2e-25       1     110 [.     575     685 ..     575     686 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.5e-28
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCT CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNal 93 
                      l +++gr +dq+h++trt+ v+rl ++ + +++ ++p+dA+++G+  G l +v s+ G ++vr+ ++ ++r+G +f+p++w++++  +g++ +l
       EHU00988.1 575 LLMNSGRIRDQWHTMTRTGLVPRLMQHCDePFAALHPQDAQRYGLCAGALARVQSDAGWMTVRVTLDSGLRRGEIFVPMHWNRQFSLQGTVGVL 668
                      6799**********************99999*************************************************************** PP

                      S--SCSTTT--CSTT-E CS
  Molydop_binding  94 tddatdplsgtpefksv 110
                      +++   p+s++p+fk++
       EHU00988.1 669 VASTRCPVSAQPAFKQT 685
                      ***************97 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   1.9   1.9e-20     7e-17       5      53 ..       2      50 ..       1      52 [. 0.96
   2 ?   -3.2   0.0       2.4   8.7e+03      12      31 ..     671     689 ..     671     698 .. 0.63
   3 ?   -2.5   1.0       1.5   5.4e+03      10      16 ..     848     854 ..     847     854 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.9e-20
                    EEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCC CS
  Molybdop_Fe4S4  5 ktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllerv 53
                    kt+C+yCgvgCg+ev+  +    +v+gd +hp+n grlCvKG++l e++
      EHU00988.1  2 KTTCAYCGVGCGVEVTQSQSASAQVRGDASHPANAGRLCVKGAALGETL 50
                    9*******************************************99986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                     TT--EEEEEEETTEEEEEEE CS
  Molybdop_Fe4S4  12 gvgCglevhvkdgkivkveg 31 
                     +++C++ ++++ +++ +v+ 
      EHU00988.1 671 STRCPVSAQPAFKQT-AVRI 689
                     578999999854444.4444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
                     SBTT--E CS
  Molybdop_Fe4S4  10 yCgvgCg 16 
                     +Cg++Cg
      EHU00988.1 848 NCGTNCG 854
                     7*****8 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   2.0   5.2e-14   1.9e-10       1      49 [.     817     864 ..     817     866 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 5.2e-14
    Fer2_BFD   1 iVCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiL 49 
                 ++C+C+gv e++I +ai ++g ++ +++ ++++ gt+Cg+C p+++ +L
  EHU00988.1 817 TICSCFGVGENTILQAI-KQGCHSTQALGNALNCGTNCGSCLPELKHLL 864
                 59***************.99*************************9998 PP

>> McyA_C  Microcystin synthetase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     2e-05     0.072      15      35 ..     453     471 ..     443     475 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
      McyA_C  15 lrvFTPTnGqAKPlhdWQlYA 35 
                  r+F P  G AKP  dW l+A
  EHU00988.1 453 QRAFMPPAGEAKP--DWWLFA 471
                 59***********..****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6257.14
//
Query:       EHU00989.1  [L=276]
Description: uroporphyrin-III C-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-47  162.7   0.4    1.4e-47  162.4   0.4    1.1  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
  ------ inclusion threshold ------
       0.23   11.5   0.0        2.9    7.9   0.0    2.1  2  MuF_C         Phage MuF-C-terminal domain


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   0.4   1.6e-51   1.4e-47       1     212 [.      22     232 ..      22     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 162.4 bits;  conditional E-value: 1.6e-51
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgs 97 
                   k++lVG+GpGd ellTv+Alr+l+ advv++d+ +++e + + +a    l  + gk+   ++ ++++i++ l++++++g++Vv+l++GDP+++g+g+
    EHU00989.1  22 KVWLVGAGPGDVELLTVKALRLLQCADVVVYDR-LVSEAVMAEVASS-ALCIDVGKQPGHHGLKQAQINQLLVDLAASGRNVVRLKGGDPFIFGRGG 116
                   799******************************.9999997665554.5666666666788889********************************* PP

  TP_methylase  98 elvealrareagieveviPGvsslqaaaarlgiplteggevlsvl...lpglakeeereleallangdtlvllkaprklaelae.lLkea.lyddtt 189
                   e++  l++  a+i +ev+PG++++  +aa++giplt++++++s+     +g + e++ + +al a+++tlv++++++  ++++  +L+e+ + +  t
    EHU00989.1 117 EEMVSLQQ--ANIVCEVVPGITAAVGCAAASGIPLTHRDCAQSLRfitGHGRSGEPQLDAAALTATNQTLVFYMGLS-WSSVISaRLREYgRSE-AT 209
                   ***88888..************************************98666677788888999999***********.6666550555555555.66 PP

  TP_methylase 190 pvavveragtedervvrgtleel 212
                   pva++e+++++d+rv  +tl+ l
    EHU00989.1 210 PVAIIENGTRRDQRVLITTLAGL 232
                   *******************9865 PP

>> MuF_C  Phage MuF-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.042   3.8e+02       5      25 ..      75      95 ..      72      97 .. 0.86
   2 ?    7.9   0.0   0.00032       2.9      25      47 ..     208     230 ..     200     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.042
       MuF_C  5 kqkekheltaedlkqlpeaLa 25
                kq  +h+l+++++ ql   La
  EHU00989.1 75 KQPGHHGLKQAQINQLLVDLA 95
                6788***********998876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00032
       MuF_C  25 adPiavfkskteenslvvltelk 47 
                 a+P+a++++ t++++ v++t l 
  EHU00989.1 208 ATPVAIIENGTRRDQRVLITTLA 230
                 68******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2062.55
//
Query:       EHU00990.1  [L=270]
Description: transcriptional regulator of sugar metabolism [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-42  145.7   0.8    1.2e-42  145.5   0.2    1.4  2  DeoRC            DeoR C terminal sensor domain
    3.9e-16   58.5   0.7    7.4e-16   57.6   0.7    1.5  1  HTH_DeoR         DeoR-like helix-turn-helix domain
    2.3e-06   27.5   0.1    5.4e-06   26.3   0.1    1.7  1  HTH_11           HTH domain
    7.4e-06   25.4   0.1    4.1e-05   23.0   0.0    2.4  3  HTH_24           Winged helix-turn-helix DNA-binding
      7e-05   22.4   0.3    0.00018   21.1   0.3    1.8  1  GntR             Bacterial regulatory proteins, gntR family
    7.1e-05   22.8   0.1    0.00022   21.2   0.0    1.8  2  HTH_20           Helix-turn-helix domain
    0.00021   21.1   0.0    0.00038   20.3   0.0    1.4  1  HTH_5            Bacterial regulatory protein, arsR family
    0.00026   20.8   0.1      0.001   19.0   0.1    2.0  1  MarR             MarR family
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.035   14.4   0.0    1.8  1  Rrf2             Transcriptional regulator
      0.017   15.0   0.3      0.082   12.8   0.1    2.2  3  MarR_2           MarR family
      0.018   14.8   0.1      0.047   13.5   0.1    1.6  1  HTH_IclR         IclR helix-turn-helix domain
      0.026   14.9   0.2      0.055   13.8   0.2    1.5  1  Penicillinase_R  Penicillinase repressor
      0.039   14.3   0.3       0.33   11.4   0.0    2.4  2  FaeA             FaeA-like protein
      0.046   13.6   0.1       0.49   10.3   0.0    2.7  2  HTH_AsnC-type    AsnC-type helix-turn-helix domain
      0.057   13.6   0.0       0.12   12.6   0.0    1.5  1  PaaX             PaaX-like protein
      0.087   12.9   0.0       0.18   11.8   0.0    1.5  1  HTH_Mga          M protein trans-acting positive regulator (M
       0.11   11.7   0.8       0.34   10.1   0.1    2.0  2  IF-2B            Initiation factor 2 subunit family
       0.12   12.4   0.2       0.16   11.9   0.2    1.3  1  DUF977           Bacterial protein of unknown function (DUF97


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       8.9   8.9e+03      13      32 ..      18      37 ..      16      45 .. 0.66
   2 !  145.5   0.2   1.2e-45   1.2e-42       2     160 .]      83     242 ..      82     242 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.9
       DeoRC 13 AaeliedgdtifldaGtTtl 32
                 +e+i+++ t+ + a t t+
  EHU00990.1 18 ILEMIREDGTVTVKALTQTF 37
                56778888887776655555 PP

  == domain 2  score: 145.5 bits;  conditional E-value: 1.2e-45
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 + eeK +I+++Aa++ie+gdt+++d+GtTt+++a+a+++ ++l vvT  +n+a +L  +++i+v+l+GG+++  + s+ g+ a ++++++ ++k+fl +
  EHU00990.1  83 HLEEKDAIGRLAAQHIENGDTVIFDSGTTTTAIADAISHIRRLSVVTTAVNIALKLGGEPGINVLLTGGTFKFPTLSTSGEKAASFFENVLAEKLFLAT 181
                 789************************************************************************************************ PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvri.aaleeidalitDk 160
                 ++i+++ gl+ ++e +++vk a+i++a+ v+++aDssK++k++++ + +++++i++litD+
  EHU00990.1 182 ACISPRLGLSFPSETDIKVKMAMINSASTVYVVADSSKIDKVSMFALpCDWSHIHYLITDS 242
                 ******************************************9887669***********6 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.7   7.5e-19   7.4e-16       1      55 [.      14      68 ..      14      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 7.5e-19
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                R+e+ile+++++g+++v+ l++ +g +eaT R DL+ L++qg + R hGGa++++
  EHU00990.1 14 RREKILEMIREDGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQRYHGGATLVT 68
                99*************************************************9875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   5.4e-09   5.4e-06       1      44 [.      14      56 ..      14      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.4e-09
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                R+++ile++ +++g+++ + L + ++++++t r d++ L+++g+
  EHU00990.1 14 RREKILEMI-REDGTVTVKALTQTFGLTEATLRTDLRMLQKQGF 56
                89*******.99999***************************93 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.1e-08   4.1e-05       4      47 ..      14      57 ..      11      58 .. 0.94
   2 ?   -3.3   0.0       7.1   7.1e+03      15      26 ..     107     118 ..     107     119 .. 0.79
   3 ?   -2.4   0.0       3.6   3.6e+03      14      24 ..     240     250 ..     236     252 .. 0.60

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.1e-08
      HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                 + kILe +++++  + + L +  gl+ +t+++ l+ L+++G++
  EHU00990.1 14 RREKILEMIREDGTVTVKALTQTFGLTEATLRTDLRMLQKQGFV 57
                678***************************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.1
      HTH_24  15 nprisqreLAer 26 
                 +++++ + +A++
  EHU00990.1 107 DSGTTTTAIADA 118
                 678899999986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.6
      HTH_24  14 knprisqreLA 24 
                  +++is + +A
  EHU00990.1 240 TDSGISPSHIA 250
                 56666666555 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   1.8e-07   0.00018      19      64 .]      23      67 ..      11      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.8e-07
                -TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR 19 rpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                r   +  ++++L + fg +  t+R  Lr+L+ +g v+r +g++t V
  EHU00990.1 23 REDGTV-TVKALTQTFGLTEATLRTDLRMLQKQGFVQRYHGGATLV 67
                555567.89**********************************988 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07   0.00022      14      55 ..      17      58 ..      13      63 .. 0.94
   2 ?   -2.8   0.0       7.2   7.2e+03       3       9 ..     115     121 ..     108     128 .. 0.55

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.2e-07
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                +il ++++++ +t+++l ++++l+ +tl+  Lr L++ g+v 
  EHU00990.1 17 KILEMIREDGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQ 58
                79**************************************96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.2
                 HHHHHS- CS
      HTH_20   3 iaeALah 9  
                 ia+A++h
  EHU00990.1 115 IADAISH 121
                 4455544 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.8e-07   0.00038       3      46 ..      14      58 ..      12      59 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.8e-07
                HHHHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  3 tRlkILklLae.gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                 R kIL + +e g  +v  l+  +gl+++t++  L++L ++G+V+
  EHU00990.1 14 RREKILEMIREdGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQ 58
                6889*******9*******************************96 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1     1e-06     0.001       7      51 ..      17      61 ..      13      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-06
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                +iL++++e g  +v+ L   +g++ +t+ + l+ L k+G+++R++
  EHU00990.1 17 KILEMIREDGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQRYH 61
                69*****************************************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.5e-05     0.035      18      60 ..      20      62 ..      17      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-05
                HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 18 akeeeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                ++ +e+++v+++++ + +++ +  l+  l++L+k+g+v+   G
  EHU00990.1 20 EMIREDGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQRYHG 62
                55567788******************************98876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.3e-05     0.082      11      54 ..      19      60 ..      13      66 .. 0.85
   2 ?   -2.2   0.0       4.1   4.1e+03       5      18 ..     113     126 ..     108     139 .. 0.51
   3 ?   -2.4   0.0       4.6   4.6e+03      12      29 ..     236     251 ..     231     257 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
                HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 11 LaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                L  + r++g  +tv++l++++gl+ +++   l+ L+++G+v+r 
  EHU00990.1 19 LEMI-REDGT-VTVKALTQTFGLTEATLRTDLRMLQKQGFVQRY 60
                4445.45553.9*****************************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHCTT CS
      MarR_2   5 paqarvLaaLgrrp 18 
                  a+a+++ +++r  
  EHU00990.1 113 TAIADAISHIRRLS 126
                 55566666665543 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.6
                 HHHHCTTTSEEEHHHHHH CS
      MarR_2  12 aaLgrrpgrdltvgelar 29 
                 ++L    g  ++++ +a+
  EHU00990.1 236 HYLITDSG--ISPSHIAA 251
                 55555555..66676665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.7e-05     0.047       8      50 ..      18      59 ..      14      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-05
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                iL++++e +  +t++ l + +gl+ +t +  L+ L+++G+v++
  EHU00990.1 18 ILEMIREDGT-VTVKALTQTFGLTEATLRTDLRMLQKQGFVQR 59
                8999988888.8*****************************96 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   5.6e-05     0.055       6      58 ..      16      64 ..      12      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.6e-05
                     SHHHHHHHHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETT CS
  Penicillinase_R  6 aevmeilwekgeatvkevveeleeekelaysTVktllrrLvkKgllsrekegr 58
                     ++++e+++e g +tvk + + +  +    ++T +t lr L k+g+++r++ g 
       EHU00990.1 16 EKILEMIREDGTVTVKALTQTFGLT----EATLRTDLRMLQKQGFVQRYHGGA 64
                     689***********99888777655....*******************99876 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00033      0.33       2      48 ..      15      60 ..      14      66 .. 0.94
   2 ?    0.0   0.1       1.1   1.1e+03      14      25 ..     108     119 ..      97     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
                HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  2 keeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                +e+Ile + +  + ++ + + + +gl+    R  L +L+k+g ++r 
  EHU00990.1 15 REKILEMIRE-DGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQRY 60
                799*******.*********************************995 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.1
                 ----HHHHHHHH CS
        FaeA  14 apckTreiAdal 25 
                 ++ +T+ iAda+
  EHU00990.1 108 SGTTTTAIADAI 119
                 567888899886 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00049      0.49       7      35 ..      17      45 ..      16      52 .. 0.94
   2 ?   -0.7   0.0       1.3   1.3e+03      19      36 ..     251     268 ..     239     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00049
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvl 35
                   kILe ++ed+  ++++L +  Gl+e+t +
     EHU00990.1 17 KILEMIREDGTVTVKALTQTFGLTEATLR 45
                   8************************9976 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
  HTH_AsnC-type  19 syaeLAervGlSestvlr 36 
                     +++L+ rv +++++ +r
     EHU00990.1 251 AFEALGVRVLVAPTPTRR 268
                    688999999999998876 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012      0.12      28      59 ..      32      63 ..      22      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekeg 59
                +l++ +G+ e ++R+ l  l+k+G ++r   g
  EHU00990.1 32 ALTQTFGLTEATLRTDLRMLQKQGFVQRYHGG 63
                5899***********************98887 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.18       4      45 ..      12      52 ..      10      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
     HTH_Mga  4 ikrklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                ++r  k+le + e ++  t++ l    gl+e tl++d++ L+
  EHU00990.1 12 QQRREKILEMIRE-DGTVTVKALTQTFGLTEATLRTDLRMLQ 52
                566679*******.*************************999 PP

>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00034      0.34      90     139 ..      83     130 ..       9     132 .. 0.87
   2 ?   -0.3   0.1      0.51   5.1e+02     212     225 ..     210     223 ..     199     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHHHHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE CS
       IF-2B  90 ieeadekigdiaaelikdgdtilTicnsktvlevlraaakekkkfkVivv 139
                  +e + +ig+ aa++i++gdt+  i +s+t +  + +a+++ ++++V+ +
  EHU00990.1  83 HLEEKDAIGRLAAQHIENGDTV--IFDSGTTTTAIADAISHIRRLSVVTT 130
                 6778899**************8..5799****************999865 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.51
                 EEEEEXXGGGBEST CS
       IF-2B 212 pvlvvaeslkfser 225
                  v+vva+s+k+++ 
  EHU00990.1 210 TVYVVADSSKIDKV 223
                 69*********986 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00016      0.16      11      57 ..      12      58 ..       2     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      DUF977 11 eelkeriiGlvkkneritisdleritGvgrtsvrkylvdvlerGdli 57
                ++ +e+i+ ++++++ +t++ l + +G    + r  l+   ++G + 
  EHU00990.1 12 QQRREKILEMIREDGTVTVKALTQTFGLTEATLRTDLRMLQKQGFVQ 58
                445689*****************************999866666443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2198.19
//
Query:       EHU00991.1  [L=265]
Description: short-chain dehydrogenase/reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-62  208.8   0.1      1e-61  208.5   0.1    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.3e-48  165.0   0.1    1.6e-48  164.8   0.1    1.1  1  adh_short      short chain dehydrogenase
    4.4e-13   49.5   0.1    6.6e-13   49.0   0.1    1.2  1  KR             KR domain
    0.00013   21.5   0.0      0.042   13.3   0.0    2.1  2  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.16   11.3   0.0    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   0.1   2.9e-65     1e-61       4     234 .]      31     263 ..      27     263 .. 0.94

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 2.9e-65
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                    gI+ a  + l ++Ga+++l +   ea +++e l e +  + v  + cDVt++++ve+++ ev++++g++Dilvn+ag++    +p+l+t+ +e+++
    EHU00991.1  31 GGIAMASNEMLLKKGARLALLYPPFEA-EKAEHLRETFAGQpVqlVCCDVTEPADVERAFGEVENHYGHIDILVNCAGYVML--QPVLDTEFAEWQK 124
                   69********************99998.77888888877555566*************************************..************* PP

                   HHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdellee 191
                    ++vnl++ fl+++a+++ ++++g  g+i+n++s +a+++++n+ ay+ aKa+l ++t+ +A+e++p++i vN+ sp ++ T++ +++    e   e
    EHU00991.1 125 QIAVNLTGPFLCSQAVAKrMVRAGngGKIINIASQAASIAIDNHVAYTSAKAGLLGMTKVMAKEFAPHRINVNTLSPTVVLTPMGEKAW-RGEKGTE 220
                   ******************65555578************************************************************999.5666889 PP

                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   +++ +plgr++ ++e+a+a+lf+as+ + +itG++l++DgG+t
    EHU00991.1 221 MKKLIPLGRFAYTDEIAAAVLFFASNGSDMITGADLMIDGGFT 263
                   9****************************************98 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.1   4.4e-52   1.6e-48       1     192 [.      22     214 ..      22     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 4.4e-52
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 kv++vtG+ +GI  a  + l+k+Ga+++++    e + e a++l+e+  g+ +  + +Dvt+ ++ve+++ ++++++g++d+Lvn+AG    +p+ +++
  EHU00991.1  22 KVAVVTGGLGGIAMASNEMLLKKGARLALLYPPFE-A-EKAEHLRETfaGQPVQLVCCDVTEPADVERAFGEVENHYGHIDILVNCAGYVMLQPVLDTE 118
                 89*************************99544433.3.45677777777899*********************************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short  98 eeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                  +ew++ i+vNltg+fl+++av++ m+ ++++G+I+n++S+a+  +  + +aY+++Ka++ g+t+ +ake+ap++i+vn++ P +v T+m +++ +
  EHU00991.1 119 FAEWQKQIAVNLTGPFLCSQAVAKRMVrAGNGGKIINIASQAASIAIDNHVAYTSAKAGLLGMTKVMAKEFAPHRINVNTLSPTVVLTPMGEKAWR 214
                 ***************************9999***********************************************************998876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   1.8e-16   6.6e-13       4     154 ..      25     176 ..      23     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.8e-16
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tGGlGg++++  ++l++kgar  +l       ++++++ ++e  a g  v++v +Dv+++++ve+++ e++++ + i   +++Ag ++ +++ +++ 
  EHU00991.1  25 VVTGGLGGIAMASNEMLLKKGARLALLYPPF---EAEKAEHLRETFA-GQPVQLVCCDVTEPADVERAFGEVENHYGHIDILVNCAGYVMLQPVLDTEF 119
                 89********************977777666...3444445555443.999************************************************ PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNa 154
                 +++++ +a  ++G     +++++      +   ++ ++S a+ +    +++Y++a a
  EHU00991.1 120 AEWQKQIAVNLTGPFLCSQAVAKrmvraGNGGKIINIASQAASIAIDNHVAYTSAKA 176
                 *************99999999985554456667999999999999999999999976 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.2e-05     0.042       2      73 ..      25     107 ..      24     157 .. 0.81
   2 !    6.4   0.0    0.0015       5.3     145     231 ..     161     249 ..     158     258 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfkee.....qpdavihlAa 73 
                 +VtG+ G i  a  + ll+kg ++  l    +a++ ++l+++      +lv +d+t+++++er+f e+     ++d+ +++A+
  EHU00991.1  25 VVTGGLGGIAMASNEMLLKKGARLALLYPPFEAEKAEHLRETfagqpvQLVCCDVTEPADVERAFGEVenhygHIDILVNCAG 107
                 8****************************9899998888888**********************9875211234677777755 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHT-EEEEEEESEEESTT..S-TTS.TTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 145 aKlageklveayaaqyglnaiilrlfnlyGpr..ngege.vsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvda 231
                 a +a+++ v +  a+ gl  ++  +   + p+  n ++  ++ v++ + +k+ +g+ + t ++++ +l  f y +++a a+l+++ + ++
  EHU00991.1 161 ASIAIDNHVAYTSAKAGLLGMTKVMAKEFAPHriNVNTLsPTVVLTPMGEKAWRGE-KGTEMKKLIPLGRFAYTDEIAAAVLFFASNGSD 249
                 5678888888888888888888888888999999777777****************.**************************9998555 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.6e-05      0.16       2      75 ..      26      93 ..      25     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevq 75
                   +TG+ G i     e+Ll+kg +   +      f++++ ehl++     + + ++l+ +D+t+ + +er++ ev+
     EHU00991.1 26 VTGGLGGIAMASNEMLLKKGARLALLY---PPFEAEKAEHLRET---FAGQPVQLVCCDVTEPADVERAFGEVE 93
                   9*********************98876...56788888998864...34678******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1896.83
//
Query:       EHU00992.1  [L=311]
Description: periplasmic-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-51  175.3  12.2    2.4e-51  174.8  12.2    1.1  1  Peripla_BP_4    Periplasmic binding protein domain
    5.5e-18   65.4   2.0    6.9e-18   65.1   2.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    4.5e-06   27.1   0.2    2.5e-05   24.7   0.1    1.9  2  Peripla_BP_3    Periplasmic binding protein-like domain
    0.00041   20.6   0.0    0.00085   19.6   0.0    1.5  1  PucR            Purine catabolism regulatory protein-like fam
     0.0085   16.0   1.7      0.029   14.2   0.5    2.2  2  LpxI_N          LpxI N-terminal domain
  ------ inclusion threshold ------
      0.065   12.8   0.2        1.3    8.6   0.0    2.2  2  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
      0.074   13.5   0.0       0.24   11.8   0.0    1.8  1  DNA_circ_N      DNA circularisation protein N-terminus
       0.25   11.6   1.7        3.5    7.9   0.1    2.6  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8  12.2   1.1e-54   2.4e-51       2     255 ..      29     279 ..      28     283 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 1.1e-54
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                    ++v + +np+  +  +g+   a+elg+++ v    + d+++Q++ i++ai k+v gii++ +dsta  +a+kkak+aGIpVv ++s++ +++  l 
    EHU00992.1  29 MILVNSLDNPYYASEAKGANLKAQELGYKTSVL-SHGEDVKKQNELIDAAIGKKVQGIILDNADSTASVAAIKKAKDAGIPVVLINSEIPVDDVALE 124
                   588999****9999*****************97.777777************************************************888888899 PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCH CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandgm 194
                    ++ +n++aG   a++ +ek+g+k gk++ l+ ++ d+n   r + f++vl++yp+++ +a +++   +  ++++ ++++l+a+p ++g+++ n+  
    EHU00992.1 125 QITHNNFQAGSDVANVFVEKMGEK-GKYAELTCNLADNNCVTRSKSFHQVLEQYPDMQSIARQDA-KGTLIDGKRIMDSILQAHPdVKGVICGNGPV 219
                   ***********************9.***********************************96555.9****************966*********** PP

                   HHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHT CS
  Peripla_BP_4 195 aegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallk 255
                   a+ga++al+aag+++ v v+g+D+++  ++a+k+Gt++atv  ++++++++++  + ++++
    EHU00992.1 220 ALGAIAALKAAGRNDVV-VVGIDGSNDERDAVKAGTLKATVMLQAQAIAAQGMTDLDNYIQ 279
                   ************98776.************************************9999987 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   2.0   3.1e-21   6.9e-18       2     272 ..      26     297 ..      25     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 3.1e-21
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-T.TT CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts..fdditakaesgipvialedaidap.dg 94 
                    ++ +++ +ld+P+++++ kg++  a+e+g+++ +l  ge+ + + + id    k++ g+i+  +d    + +i++ + +gipv++++  i  + ++
    EHU00992.1  26 GTIMILVNSLDNPYYASEAKGANLKAQELGYKTSVLSHGEDVKKQnELIDAAIGKKVQGIILDNADSTasVAAIKKAKDAGIPVVLINSEIPVDdVA 122
                   68999*******************************999998877699**************855544337888888888********998666599 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHT..G.EEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SS CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrp..i.allegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivain 188
                   +  +  +++qag       ++++ +++    +  ++ +++  ++ +   f + l++   ++++        +  d++  + ++l+ hP+++ ++++n
    EHU00992.1 123 LEQITHNNFQAGSDVANVFVEKMGEKGkyAeLTCNLADNNCVTRSKS--FHQVLEQY-PDMQSIARQDAKGTLIDGKRIMDSILQAHPDVKGVICGN 216
                   99999**********************85256666666776666666..9****999.4477777777888999*********************** PP

                   HHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH...-SEEEE--EEEEE CS
  Peripla_BP_1 189 deaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki...nkerehprvllip 272
                     +alGa+ alk++Gr   ++ v+ +i +    +    +++++l   ++  +q++   +G +  d+ +qk    +k+r   r +li+
    EHU00992.1 217 GPVALGAIAALKAAGR---NDVVVVGIDGSNDERDA--VKAGTLKATVMLQAQAI-AAQGMTDLDNYIQKGvkpEKQRVMFRGILIT 297
                   ***************4...44454444443333333..77788888888888887.6778777777777644555555555555555 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.44     1e+03      33      99 ..      40     108 ..      31     110 .. 0.65
   2 !   24.7   0.1   1.1e-08   2.5e-05      51     155 ..     189     289 ..     158     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.44
                   HHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH...HHCC-SEEEEE..SSCCHHHHHHHHHCCTT-- CS
  Peripla_BP_3  33 frqaleelglplnetvvaaddpaaaaaaraalllqal...klaalPtAvia..asDelAlgvlqalreaglr 99 
                   ++++++ ++l+ +e  +++   + +++++++    +l   +++++ +++i   a+  + +++++ +++ag+ 
    EHU00992.1  40 YASEAKGANLKAQELGYKTSVLSHGEDVKKQN---ELidaAIGKKVQGIILdnADSTASVAAIKKAKDAGIP 108
                   56666777777777777777777777777766...2222223337789999644555556777888888875 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.1e-08
                   -SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--SCC.CSSSS.--.EEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_3  51 addpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalreaglrvPedlsvigfddsela.alssP.pl.TtvrqpleelGraaaellld 142
                   + +   ++++ + +      l+a+P+  +vi+ +  +Alg+++al++ag    +d+ v+g+d+s+     +    l  tv ++++ ++ + ++ l  
    EHU00992.1 189 KGTLIDGKRIMDSI------LQAHPDvkGVICGNGPVALGAIAALKAAGR---NDVVVVGIDGSNDErDAVKAgTLkATVMLQAQAIAAQGMTDLDN 276
                   33222222222222......22267566**********************...8*********9888433333244779999999999999999999 PP

                   HHTT---S--EEE CS
  Peripla_BP_3 143 llegekappeqvl 155
                   ++++  +p++q++
    EHU00992.1 277 YIQKGVKPEKQRV 289
                   9977777777765 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.8e-07   0.00085      39     110 ..      49     122 ..      31     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.8e-07
        PucR  39 lrggeLllttglal.kddpealaelvrelaeagvaaLviklgr.eipeelieaadelglPlielpeevpfveii 110
                 l+ +eL   t +    +d +++ el+++   ++v ++++ + + + + ++i+ a+ +g+P++ +++e+p +++ 
  EHU00992.1  49 LKAQELGYKTSVLShGEDVKKQNELIDAAIGKKVQGIILDNADsTASVAAIKKAKDAGIPVVLINSEIPVDDVA 122
                 56666655555555489************************745999**********************99996 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.33   7.4e+02      13      33 ..      96     116 ..      94     144 .. 0.77
   2 !   14.2   0.5   1.3e-05     0.029       3      44 ..     211     253 ..     210     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.33
      LpxI_N  13 llvaeaakaagrevvvvaleg 33 
                 ++++++ak+ag++vv++  e 
  EHU00992.1  96 VAAIKKAKDAGIPVVLINSEI 116
                 56789999*****99987665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.3e-05
      LpxI_N   3 gliAGsGrlPllvaeaakaagr.evvvvalegeadeelekivd 44 
                 g+i+G+G  +l +++a+kaagr +vvvv++ g+ de+ + ++ 
  EHU00992.1 211 GVICGNGPVALGAIAALKAAGRnDVVVVGIDGSNDERDAVKAG 253
                 89*******************889********99887665554 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0006       1.3      77     111 ..      93     132 ..      79     177 .. 0.81
   2 ?    2.4   0.1     0.048   1.1e+02      65     107 ..     209     252 ..     200     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0006
                   HHCHHHHHHHHHHT--EEEEEEE--CCCHH.....S..TC CS
  TPP_enzyme_N  77 tnaltalaeAkvdriPllvlsgdrptslrg.....qgvlq 111
                   t  + a+  Ak ++iP++++  ++p++++      ++ +q
    EHU00992.1  93 TASVAAIKKAKDAGIPVVLINSEIPVDDVAleqitHNNFQ 132
                   6678999*********************996444444444 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.048
                   -EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH.S CS
  TPP_enzyme_N  65 pgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg.q 107
                   +  v++ +gp a+ a+ al  A ++ + ++ + g++++++    
    EHU00992.1 209 VKGVICGNGPVALGAIAALKAAGRNDVVVVGIDGSNDERDAVkA 252
                   55688999***************999999999999888877643 PP

>> DNA_circ_N  DNA circularisation protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.24      36      73 ..     140     177 ..     132     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
  DNA_circ_N  36 pdvedlGrkareirleavlvgddylaqrdaLiealekp 73 
                   ve +G+k +  +l++ l +++++++ +++ ++le+ 
  EHU00992.1 140 VFVEKMGEKGKYAELTCNLADNNCVTRSKSFHQVLEQY 177
                 579********************************964 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0016       3.5      13      59 ..      71     113 ..      67     129 .. 0.84
   2 ?    2.5   0.1     0.075   1.7e+02      24      58 ..     209     240 ..     192     291 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
                     HHHHHHHHHTT--EEEEEEBTTTB--H.HHHHHHHHHHTTT-EEEEEE CS
  Asparaginase_C  13 tkvlkallkkgakGvvlegtGvGnlps.allealkeakargivvvats 59 
                     +++++a++ k+++G++l      n+ s a + a+k+ak++gi+vv++ 
      EHU00992.1  71 NELIDAAIGKKVQGIILD-----NADStASVAAIKKAKDAGIPVVLIN 113
                     678889999999999998.....455558899*************865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.075
                     --EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEEE CS
  Asparaginase_C  24 akGvvlegtGvGnlpsallealkeakargivvvat 58 
                     +kGv+    G+G +    + alk a ++++vvv +
      EHU00992.1 209 VKGVI---CGNGPVALGAIAALKAAGRNDVVVVGI 240
                     45654...688888889999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2382.24
//
Query:       EHU00993.1  [L=203]
Description: hypothetical protein CKS_3356 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-52  177.0   0.0    4.1e-52  176.8   0.0    1.0  1  DUF2291   Predicted periplasmic lipoprotein (DUF2291)


Domain annotation for each model (and alignments):
>> DUF2291  Predicted periplasmic lipoprotein (DUF2291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.0   2.3e-56   4.1e-52       2     197 ..       8     200 ..       7     201 .. 0.94

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 2.3e-56
                 XXXXXXXXXXXXXXXXXXXX.....X--HHHHHHHHHHHHHHHHHH--SEEHHHHHHHHHH..-HHHHHHHHEB--TTSSEEEEEEEEEEEEEEEETTE CS
     DUF2291   2 vvallllsgckivkideaakaaekaafdpeayvaeiWdekllpaleekAvdlaellaalka..dpeaagekygkrvgissplvfaVkgtGtvvsvdtes 98 
                 ++++++lsgc+iv+++e+a+++++ +++++a+  ++W++kl+p++  +A +l el++ l+a  d ++a+++ g+r ++++p+vf V+++G v++ +t+s
  EHU00993.1   8 ILVVAALSGCRIVSQQELADLKNP-PNPHMANIHALWQQKLVPQIVAQARPLGELMQRLQAekDLDSACKALGYRSQSENPCVFSVSVSGDVTALETTS 105
                 7899********************.********************************99987799********************************** PP

                 ......EEEE-SSS-SS-SEEEES---TTHHHHHH-S--GGG-SSHHHHHHHHHHHHHHHHHCTHHHHHTTC--T-EEEEEEEEEEETT----....EE CS
     DUF2291  99 ragtltvdvdgddgkadvkvqiGpvikGtaiRDalgfidfndFknqidfaqvgtalnkrvkeevlspldrealkGktveftGaftlnkedlil....it 193
                 r+g+++v+   d++  +v++q+Gp+i+Gta+RDa++ i+++dF+nq  f ++g+a+n+++ ++     d+  ++G++v+++G+f  +++d++     it
  EHU00993.1 106 RNGKMKVK---DASGDTVTIQAGPIIRGTALRDAYKGISYQDFNNQDLFSDFGKAINQQAVNMM---KDSHIKTGDHVQVVGVF--SSWDIPRalpaIT 196
                 ********...778889**********************************************7...4455555**********..78888888889** PP

                 EEEE CS
     DUF2291 194 Pvel 197
                 P+++
  EHU00993.1 197 PAQI 200
                 *998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1471.26
//
Query:       EHU00994.1  [L=515]
Description: ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-51  174.9   0.1    2.6e-28   99.3   0.0    2.2  2  ABC_tran     ABC transporter
    1.5e-11   44.7   1.6     0.0027   17.6   0.1    3.2  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      6e-05   22.9   0.0     0.0001   22.2   0.0    1.4  1  AAA_15       AAA ATPase domain
    0.00018   21.0   3.2     0.0022   17.5   1.2    2.8  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00073   19.5   0.1     0.0054   16.7   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
     0.0018   18.2   0.2        1.8    8.6   0.1    2.5  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
     0.0036   17.6   3.8       0.52   10.6   0.0    3.3  3  AAA_22       AAA domain
     0.0036   17.0   0.0       0.01   15.6   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
     0.0046   16.7   0.1      0.025   14.3   0.1    2.2  1  AAA_30       AAA domain
      0.005   17.4   0.0      0.017   15.7   0.0    1.8  1  AAA_23       AAA domain
     0.0067   15.1   0.1      0.012   14.2   0.1    1.3  1  AAA_13       AAA domain
     0.0068   16.2   1.0       0.56    9.9   0.1    3.3  3  IstB_IS21    IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.011   16.2   1.5        0.4   11.1   1.5    2.9  1  AAA          ATPase family associated with various cellular a
      0.048   12.5   0.0      0.084   11.7   0.0    1.3  1  DLIC         Dynein light intermediate chain (DLIC)
      0.053   13.6   0.0       0.13   12.3   0.0    1.7  2  Dynamin_N    Dynamin family
      0.063   12.2   0.1       0.19   10.6   0.0    1.8  2  AAA_10       AAA-like domain
       0.26   11.2   0.7         41    4.0   0.0    3.0  3  ATPase_2     ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   2.4e-31   2.6e-28       1     137 []      27     176 ..      27     176 .. 0.91
   2 !   73.7   0.0   1.8e-23   1.9e-20       1     136 [.     279     436 ..     279     437 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 2.4e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l++v+  ++++++ +++GenGaGKSt++k+lag ++p +Gei+ldgk+++   +++  +  i++++qe +lfp+++v +n                +  
  EHU00994.1  27 LDQVNYRVYRNKVNVLIGENGAGKSTMMKMLAGVETPSSGEIWLDGKPVTLsSTHQAEKLGISIIFQELNLFPNMNVMDNifianeffqrgvinekY-- 123
                 799**********************************************996777778889************************999999996533.. PP

                 TC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +   ++++l++l+l+ ++  ++     +L  G++q v++aral k+ ++l++DEpt+
  EHU00994.1 124 -QyqlAQALLERLELDVDPCAPL----DELGIGHQQLVEIARALSKDTRVLIMDEPTS 176
                 .3335888888888888888888....*****************************96 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 1.8e-23
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................ 79 
                 l+ vs++l++ge+++i G  GaG + L+k l+gl   + G+i l ++ l++ +  ++lr+ i+ +p++   + +   +++  n                
  EHU00994.1 279 LNAVSFSLRKGEVIGIYGLLGAGRTELFKGLIGLQPCQDGHICLGEQRLDTcNFQQRLRRGIALVPEDrkgEGIVGLMSITANmtlsdlslrgfrrals 377
                 689***************************************999999999888999***********887667777777777999999********** PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                       +++++++++++l +k  + +      +sLSgG +q+v+l +al++ p+++llDEpt
  EHU00994.1 378 lvnpeREQQRVNDMIRQLAIKVSDSELP---ITSLSGGNQQKVVLGKALMTGPQVVLLDEPT 436
                 **99888888999999999988444443...6*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   8.8e-06    0.0093       1      22 [.      39      60 ..      39     132 .. 0.77
   2 !   17.6   0.1   2.5e-06    0.0027     233     298 ..     144     206 ..     132     212 .. 0.85
   3 !    9.1   0.0   0.00097         1     229     296 ..     401     465 ..     363     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.8e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +nvliG Ng+GKS+ ++ l ++
  EHU00994.1 39 VNVLIGENGAGKSTMMKMLAGV 60
                7***************999776 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.5e-06
      AAA_21 233 parelSdGtkrllalltallralkkg.sllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 p++el+ G+++l  ++ al      + ++l+ DEp + L  + ++ l+ ++++l+r+g+ +i  +H 
  EHU00994.1 144 PLDELGIGHQQLVEIARALSK----DtRVLIMDEPTSALSQSEVKVLFNVIEQLKRRGVTIIYISHR 206
                 677888888888555555554....44***************************************6 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00097
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 + elp+++lS G ++   l  al   +    ++l+DEp  g++  + + ++ l+ +l++ g  v++++
  EHU00994.1 401 DSELPITSLSGGNQQKVVLGKALMTGP---QVVLLDEPTRGIDVGAKTDVYHLIGQLAQQGLAVMFSS 465
                 447999999*******66666666555...9**************99999999988888888888876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.7e-08    0.0001      10      83 ..      31     113 ..      30     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.7e-08
      AAA_15  10 NFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn...................kkvikiekedleifeniseskdikIdvef 83 
                 N+R +++      + ++vliG+N++GKS+ +++l    + +   +                   k  i i  ++l+ f n +   +i I+ ef
  EHU00994.1  31 NYRVYRN------K-VNVLIGENGAGKSTMMKMLAGVETPS---SgeiwldgkpvtlssthqaeKLGISIIFQELNLFPNMNVMDNIFIANEF 113
                 9999997......6.*******************7766666...3445777778888888887766666777778888888888888888888 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.2     2e-06    0.0022      23     211 ..      36     219 ..      27     226 .. 0.77
   2 ?   -1.0   0.0      0.92   9.7e+02     126     187 ..     398     455 ..     365     485 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2e-06
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seykingkevtk 120
                  +++++++G+NG+GKs ++  +  v   +s  ++  +    +    ++ ++++k  ++i+f++ +       ++++++ +++  +e  +  + +++ ++
  EHU00994.1  36 RNKVNVLIGENGAGKSTMMKMLAGVETPSSG-EIWLDGKP-VTL--SSTHQAEKLGISIIFQELNLF-----PNMNVMDNIFIANEfFQRGVINEKYQY 125
                 5789****************99665554444.44443333.332..4678889999******99998.....666666666666664333344566788 PP

                 HHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                 +  + lle+ +++ +      +L  G ++Lv +a  +     k + + ++De  +aL +++vk + +++++ + + + +i is+r e l +    + +
  EHU00994.1 126 QLAQALLERLELDVDpcapldELGIGHQQLVEIARAL----SKDTRVLIMDEPTSALSQSEVKVLFNVIEQLKRRgVTIIYISHRLEELMEIGDHITI 219
                 999999999999999889988**********998765....4677899**********************98877689999***98777766555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.92
                 HHHCTT-STTCS-HHHHHHHHH..HHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiskelLSgGektLval..aLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                  ++++++ +++LSgG+++ v l  aL+          ++llDe    +D    + v +l+ +  
  EHU00994.1 398 KVSDSELPITSLSGGNQQKVVLgkALM------TGPQVVLLDEPTRGIDVGAKTDVYHLIGQLA 455
                 334455555589999665333200222......2222445555555555555555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.1e-06    0.0054      96     129 ..      34      67 ..      22      77 .. 0.83
   2 ?   -1.0   0.0       1.4   1.5e+03      87     122 ..     276     312 ..     258     339 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.1e-06
                  HCTTSEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpelelktge 129
                  + ++k+ vl+G+ G+GKSt++++l++ ++ + ge
   EHU00994.1  34 VYRNKVNVLIGENGAGKSTMMKMLAGVETPSSGE 67 
                  4578********************9976665555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  +  l++++  l++ +++ + G  G+G++ L + l++ 
   EHU00994.1 276 GYRLNAVSFSLRKgEVIGIYGLLGAGRTELFKGLIGL 312
                  45677888888887999999*******9999988875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0054       5.7      19      40 ..      37      58 ..      23      64 .. 0.79
   2 !    8.6   0.1    0.0017       1.8      14      40 ..     286     310 ..     272     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0054
                TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgla 40
                ++v +L G+ GaGK+t+++ la
  EHU00994.1 37 NKVNVLIGENGAGKSTMMKMLA 58
                67889*************9986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0017
                 HHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE  14 lakalgdvilLeGdLGaGKTtlvrgla 40 
                 l k  g+vi ++G LGaG T l +gl+
  EHU00994.1 286 LRK--GEVIGIYGLLGAGRTELFKGLI 310
                 333..889****************997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0005      0.52       7      26 ..      39      58 ..      34      77 .. 0.90
   2 ?    5.4   0.2      0.02        21      55     128 ..     126     203 ..     118     210 .. 0.76
   3 ?    0.5   0.1      0.63   6.6e+02      10      70 ..     294     382 ..     287     434 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0005
      AAA_22  7 ilvvtGesGtGKTtllrrll 26
                + v++Ge G+GK+t +++l+
  EHU00994.1 39 VNVLIGENGAGKSTMMKMLA 58
                5689*************986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.02
      AAA_22  55 dllrellralglelka.erlsseell.ealeqalrarav.ielliiDEaqh.lr.s.eealeeLrsllnlsrkgvqliLv 128
                 +l+++ll+ l+l+ +  ++l++  +  ++l + +ra ++ +++li DE    l+ s  ++l ++ + l+  r gv++i++
  EHU00994.1 126 QLAQALLERLELDVDPcAPLDELGIGhQQLVEIARALSKdTRVLIMDEPTSaLSqSeVKVLFNVIEQLK--RRGVTIIYI 203
                 677888888888777787788888887999999999999*********999885425555555556666..777777765 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.63
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..........................erpevv.fvtlpsstsskdl.lrellralglelka 70 
                 ++G  G+G+T l + l    + +  +                            ++ ++v ++ +++ ++++dl lr + ral l + +
  EHU00994.1 294 IYGLLGAGRTELFKGLIGLQPCQDGHIClgeqrldtcnfqqrlrrgialvpedrKGEGIVgLMSITANMTLSDLsLRGFRRALSLVNPE 382
                 66777777776666555444322222223444444444444444444444444444444456666666666666666666666665555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.4e-06      0.01      15      40 ..      30      55 ..      25      67 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.4e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTllD 40
                  +++ ++ + +l+G++G+GKST++ 
  EHU00994.1 30 VNYRVYRNKVNVLIGENGAGKSTMMK 55
                556666667899***********985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   2.4e-05     0.025      18      63 ..      37      87 ..      29     205 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaa.g.....grviglAptgkaAkvLa 63
                ++v vl G  G+GK+t++k l+ + + + g     g+ + l++t++a ++L+
  EHU00994.1 37 NKVNVLIGENGAGKSTMMKMLAGVETPSsGeiwldGKPVTLSSTHQA-EKLG 87
                5799*****************99988874566666555555555543.5555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05     0.017      19      38 ..      37      56 ..      28      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
      AAA_23 19 kgltlItGpNGaGKTTildA 38
                +++++++G+NGaGK+T +  
  EHU00994.1 37 NKVNVLIGENGAGKSTMMKM 56
                689*************9976 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-05     0.012      16      76 ..      37     114 ..      31     123 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
      AAA_13  16 kriNliYGwNGaGKTtLSrllrslelgetepkfangsi....eitnge.................eldirVfNrdFveenls 76 
                 +++N++ G NGaGK+t+ ++l+ +e+ +  +    g+     +    +                  +++ V  + F+ ++++
  EHU00994.1  37 NKVNVLIGENGAGKSTMMKMLAGVETPSSGEIWLDGKPvtlsS----ThqaeklgisiifqelnlFPNMNVMDNIFIANEFF 114
                 589*********************8766555444444333331....12333445555555555566666666666666555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1   1.1e+02      44      65 ..      34      55 ..      16      63 .. 0.77
   2 !    9.9   0.1   0.00053      0.56     102     150 ..     158     206 ..     147     218 .. 0.76
   3 ?   -1.4   0.0       1.6   1.7e+03      42      76 ..     283     319 ..     272     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
   IstB_IS21 44 iekkenivllGpsGvGKshlai 65
                + +++  vl+G  G+GKs +  
  EHU00994.1 34 VYRNKVNVLIGENGAGKSTMMK 55
                556677799********98765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
   IstB_IS21 102 alkrllkv.dllilDdlgllpldqaeaellfeviekryerrsiiitsnlp 150
                 ++++l k  ++li+D+  +  l+q e ++lf+vie+   r  +ii     
  EHU00994.1 158 IARALSKDtRVLIMDEP-TSALSQSEVKVLFNVIEQLKRRGVTIIYISHR 206
                 44444443389****96.679***************99999999865555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.6
   IstB_IS21  42 sf.iekkenivllGpsGvGKshlaia.lgveavragl 76 
                 sf ++k e i + G  G+G++ l    +g + +++g+
  EHU00994.1 283 SFsLRKGEVIGIYGLLGAGRTELFKGlIGLQPCQDGH 319
                 553577788999*********9977625888888886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.5   0.00038       0.4       3     116 ..      42     211 ..      40     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
                 EESSTTSSHHHHHHHHHHH.........HTHEEEEEETTTCSSS....................................................... CS
         AAA   3 lyGppGtGKTllakavake.........lgvefleisgsellsk....................................................... 37 
                 l+G  G GK++++k +a           l+ + +++s +   +k                                                       
  EHU00994.1  42 LIGENGAGKSTMMKMLAGVetpssgeiwLDGKPVTLSSTHQAEKlgisiifqelnlfpnmnvmdnifianeffqrgvinekyqyqlaqallerleldvd 140
                 789999999999999998865555554434444555555555445556666666666666777778888888888888888888888888888999999 PP

                 ......STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  38 ......yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                        +g + +++ e+ +++++     +l++DE  +  +++           v++L+++++++k++   v++i +++r ++l 
  EHU00994.1 141 pcapldELGIGHQQLVEIARALSKDT--RVLIMDEPTSALSQS----------EVKVLFNVIEQLKRR--GVTIIYISHRLEELM 211
                 99988888888888888888777665..9******99888877..........6*************5..6*********88774 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     8e-05     0.084      24      54 ..      36      66 ..      27      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8e-05
        DLIC 24 sgksvlvlGedgsGkttliaklqGveeekkG 54
                 +k  +++Ge+g+Gk+t++  l Gve +  G
  EHU00994.1 36 RNKVNVLIGENGAGKSTMMKMLAGVETPSSG 66
                5788899*******************99877 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.13       2      45 ..      41      84 ..      41     201 .. 0.86
   2 ?   -2.4   0.0         4   4.2e+03      83     118 ..     409     446 ..     380     475 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT-- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeee 45
                +++G+  +GKS+++  L g +   +g++    +p++l+  ++ e
  EHU00994.1 41 VLIGENGAGKSTMMKMLAGVETPSSGEIWLDGKPVTLSSTHQAE 84
                689******************88899999999999999888766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
                 SSS--SS-EEEEEEETTS-SEEEEE--..-B-SSSGTT CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDlP..Gldsvnkrd 118
                 ++g +++ ++l +   + ++++l+D P  G+d  +k d
  EHU00994.1 409 LSGGNQQKVVLGKALMTGPQVVLLDEPtrGIDVGAKTD 446
                 44444445666666777888888888766777777766 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.19      12      41 ..      28      57 ..      20      63 .. 0.85
   2 ?   -2.9   0.0       2.3   2.4e+03     131     152 ..     175     196 ..     156     225 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
      AAA_10 12 qevkgsktnasasliiGdlGnGKSvlakll 41
                 +v+  ++++   ++iG+ G+GKS ++k+l
  EHU00994.1 28 DQVNYRVYRNKVNVLIGENGAGKSTMMKML 57
                6788889999999***************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.3
      AAA_10 131 veavlegkqrgllavieelrke 152
                  +a  +++ + l +vie+l+++
  EHU00994.1 175 TSALSQSEVKVLFNVIEQLKRR 196
                 4444555556666666666432 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.059        62      19      40 ..      36      57 ..      24      67 .. 0.82
   2 ?    0.1   0.0      0.59   6.2e+02     110     155 ..     159     196 ..     108     214 .. 0.75
   3 ?    4.0   0.0     0.039        41      20      41 ..     289     310 ..     279     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.059
    ATPase_2 19 pneiyfiYGpegsGKtaLlkei 40
                +n++ ++ G  g GK++++k +
  EHU00994.1 36 RNKVNVLIGENGAGKSTMMKML 57
                48999**************976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.59
    ATPase_2 110 lekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltke 155
                  ++++k+ +  ++i+De   +       +++ vk L+n+ie+l ++
  EHU00994.1 159 ARALSKDTR--VLIMDEPTSAL------SQSEVKVLFNVIEQLKRR 196
                 444444444..77777777777......245577788887775543 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.039
    ATPase_2  20 neiyfiYGpegsGKtaLlkeii 41 
                  e++ iYG  g G t L+k +i
  EHU00994.1 289 GEVIGIYGLLGAGRTELFKGLI 310
                 67899*************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 3557.94
//
Query:       EHU00995.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-98  330.0   3.7    6.9e-98  327.6   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.037   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.05   13.2   3.1      0.044   13.4   0.9    1.8  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.055   12.0   7.7        0.1   11.1   7.7    1.4  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.1   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.17   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.26   11.1  10.4       0.45   10.3  10.4    1.3  1  ERM              Ezrin/radixin/moesin family
       0.27   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.49   10.2   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.75    9.0   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        1.6    8.9   8.7        1.1    9.5   5.2    2.1  2  CREPT            Cell-cycle alteration and expression-elevate
        2.4    7.7   7.4        5.8    6.4   7.4    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.9    7.2   8.7         17    6.1   2.1    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  327.6   0.0    8e-101   6.9e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU00995.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 327.6 bits;  conditional E-value: 8e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU00995.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU00995.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU00995.1 380 GSPADERLAVRKEQTIPLMQSLHDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU00995.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU00995.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU00995.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU00995.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU00995.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU00995.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU00995.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -0.8   0.0       1.1   9.2e+02     125     146 ..     351     384 ..     339     449 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU00995.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU00995.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6777888888887776666654444444444441 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU00995.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU00995.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU00995.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU00995.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU00995.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU00995.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU00995.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU00995.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU00995.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU00995.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU00995.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU00995.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU00995.1 167 ACCSCDHI 174
                  35555554 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU00995.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU00995.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -0.1   0.1       1.1   9.7e+02      66     106 ..     386     426 ..     383     433 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU00995.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU00995.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l+d++++q + l+++  +++ +   l
  EHU00995.1 386 RLAVRKEQTIPLMQSLHDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666677778999***********9999999888776555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU00995.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU00995.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU00995.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                     1051  (0.0586201); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 3416.84
//
Query:       EHU00996.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU00996.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 911.99
//
Query:       EHU00997.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU00997.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU00997.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU00997.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU00997.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 831.05
//
Query:       EHU00998.1  [L=355]
Description: permease component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-43  146.6  44.5    1.1e-42  146.1  44.5    1.2  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1  44.5   6.2e-47   1.1e-42       7     267 ..      45     320 ..      39     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 6.2e-47
  BPD_transp_2   7 tlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl.........lllallvallvgaavglllgllvlrlkvdeliitllllsv 94 
                     +ai +++A+G++lv+ ++G+i+l++g++++++++va+ ll+++ +l         ++ ++lv  l+g++vg+l+g++++rl+v ++i tl++++v
    EHU00998.1  45 QHVAITGLLAIGMTLVI-LTGGIDLSVGAVAGICGMVAGALLTAGIPLwdgnrlflnVPEVILVVALFGVLVGMLNGAMITRLGVAPFICTLGVMYV 140
                   56899************.******************************************************************************* PP

  BPD_transp_2  95 lvgltlllltgitsgvkgqssvkellgfagallsflsaviv.......llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfv 184
                   ++g +ll++ g+t      +  ++l +   + + +l++  +       +l++ ++l+ l+l r+t++Gr ++a+g+ne aar++G+++ +vk+++++
    EHU00998.1 141 ARGAALLFNDGATY-----ANLVGLPALGNTGFAWLGSGTFlgvyipiWLMIGFLLLGLYLTRKTPLGRYIYATGGNEPAARLAGVPIIKVKVFVYA 232
                   ******55554442.....22222222222222222222222446677999********************************************** PP

  BPD_transp_2 185 isgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   +sg++A+l+G+++a +l+++ p +g +++++ai a vlGg+      g+l g +iGa++i+++ + ++ ++g++  +++v+ g++++ +
    EHU00998.1 233 FSGLCAALVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTalaggrGRLSGSIIGAFVIVFLAD-GMVMMGVSDFWQMVIKGVVIVTA 320
                   *****************************************************************.88888888999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2649.01
//
Query:       EHU00999.1  [L=261]
Description: short-chain dehydrogenase/reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-61  208.2   2.5    1.1e-60  205.1   2.5    1.9  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.3e-55  186.2   0.7    5.5e-55  185.8   0.7    1.1  1  adh_short     short chain dehydrogenase
    2.6e-12   47.0   0.8    3.6e-12   46.6   0.8    1.3  1  KR            KR domain
  ------ inclusion threshold ------
      0.083   12.8   0.4          7    6.7   0.0    2.9  3  TLP1_add_C    Thiolase-like protein type 1 additional C-termi
       0.11   12.0   0.1       0.16   11.4   0.1    1.3  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   2.5     3e-64   1.1e-60       1     233 [.      14     258 ..      14     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 3e-64
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIG++iA ++a+ Ga++v++   ++  +++++l + +ga++  l++DVtde+qv++l ++++e+fg++D+ + nagi +        +++++f
    EHU00999.1  14 GACRGIGAGIAARFAQDGANLVMVSNADRVFATADSLRA-TGAAIlaLQADVTDEAQVQRLYRQAAERFGGIDVSIQNAGIITI-----DALPKSDF 104
                   899**************************9777777776.5666336***********************************98.....679***** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT...... CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg...... 184
                   dr+l+vn+++++l++++a+++m ++  gs++n+ss ++++++  + +y+a+K +++++t++lA el++ +i+vNa +pg+i+ ++++  ++      
    EHU00999.1 105 DRVLAVNTTGVWLCCREAAKYMVQQngGSLINTSSGQGRKGFIYTPHYAASKMGVIGITQSLALELARWNITVNAFCPGIIESEMWDYNDRawgail 201
                   ********************7765557*********************************************************9754433333444 PP

                   ........HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ........fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                           + el++e+ + +pl+r+g+p++va +++fLasd+a+yitGqt+ vDgGl
    EHU00999.1 202 ssdkktygKGELMAEWVDTIPLKRAGQPQDVAGLVAFLASDDARYITGQTINVDGGL 258
                   44444444667*********************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.7   1.5e-58   5.5e-55       1     188 [.       8     191 ..       8     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 185.8 bits;  conditional E-value: 1.5e-58
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+v++tGa++GIG  ia ++a++Ga++v+v++  +++ ++a++l+++ga +la+q+Dvtd+++v++l+++a++++g++dv ++NAGi    ++  l ++
  EHU00999.1   8 KTVVITGACRGIGAGIAARFAQDGANLVMVSNA-DRVFATADSLRATGAAILALQADVTDEAQVQRLYRQAAERFGGIDVSIQNAGI---ITIDALPKS 102
                 79*************************997766.7788*************************************************...58999**** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +++rv++vN tgv l++r+++++m++q++G+ +n+sS +g+++++ ++ Y+AsK +v+g+t+sla ela+++i+vna +PG+++++m  
  EHU00999.1 103 DFDRVLAVNTTGVWLCCREAAKYMVQQNGGSLINTSSGQGRKGFIYTPHYAASKMGVIGITQSLALELARWNITVNAFCPGIIESEMWD 191
                 ***************************************************************************************86 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.8     1e-15   3.6e-12       2     151 ..       9     154 ..       8     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1e-15
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t++itG++ g+G  +a   a++ga +lv++s      ++  a+ ++l+a+ga + +++aDv+d+++v++l +++ ++++ i   i+ Ag++    ++ +
  EHU00999.1   9 TVVITGACRGIGAGIAARFAQDGA-NLVMVSNA----DRVFATADSLRATGAAILALQADVTDEAQVQRLYRQAAERFGGIDVSIQNAGIIT---IDAL 99 
                 689********************8.68888888....45667899*********************************************96...6666 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaa 151
                  ++d+++vla   +G+w   +  ++    ++   ++ +SS  g  g     +Yaa
  EHU00999.1 100 PKSDFDRVLAVNTTGVWLCCREAAKymvqQNGGSLINTSSGQGRKGFIYTPHYAA 154
                 7889999999999999986544333344477777777777777777777777766 PP

>> TLP1_add_C  Thiolase-like protein type 1 additional C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.024        87      48      80 ..      52      90 ..      21      93 .. 0.77
   2 ?   -3.8   0.0       3.6   1.3e+04      48      58 ..     102     112 ..     101     114 .. 0.73
   3 ?    6.7   0.0     0.002         7      27      54 ..     217     247 ..     202     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.024
  TLP1_add_C 48 sdgaRfLAn...eadeetlealvsedve...GakvrVrq 80
                + ga +LA     +de+++++l ++++e   G  v++++
  EHU00999.1 52 ATGAAILALqadVTDEAQVQRLYRQAAErfgGIDVSIQN 90
                445555555666899999***999999999888888876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.6
  TLP1_add_C  48 sdgaRfLAnea 58 
                 sd +R+LA+++
  EHU00999.1 102 SDFDRVLAVNT 112
                 56679999865 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.002
  TLP1_add_C  27 y..TvefnRdgePek.gfvvgRltsdgaRfL 54 
                 +  T++++R+g+P+  + +v+ l sd+aR +
  EHU00999.1 217 WvdTIPLKRAGQPQDvAGLVAFLASDDARYI 247
                 3469*********9735699999*****986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.6e-05      0.16       1      63 [.      10      77 ..      10     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.6e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfkee 63
                +++tGa   iG+ ++ ++++ g +++ +++  + ++ta   ++        ++d+td+++++rl ++ 
  EHU00999.1 10 VVITGACRGIGAGIAARFAQDGANLVMVSNADRVFATADSLRAtgaaiLALQADVTDEAQVQRLYRQA 77
                689*************************99988888877666689998889********999987753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1857.98
//
Query:       EHU01000.1  [L=301]
Description: hypothetical protein CKS_3365 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-53  179.4   3.3    1.1e-52  179.3   3.3    1.0  1  Bestrophin  Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
          1    9.6   6.3        1.7    8.9   2.7    2.4  2  BofA        SigmaK-factor processing regulatory protein BofA


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   3.3   1.2e-56   1.1e-52       6     294 ..       6     279 ..       1     280 [. 0.87

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 1.2e-56
  Bestrophin   6 klrsflkllfrwkGsvyklilrelllflllyalvvllyrleerl...........fellsicelipLsfvLgFrvnavydRWweqrkllgwldkaarsl 93 
                   ++++  lf+w+Gsv++ il +l+l ll+++l  +l     ++           f+l+++    +++++LgFr++++y+R+ e+r llg l  a+r++
  EHU01000.1   6 P-NHWFIRLFAWHGSVLPDILFRLFLNLLMSLLALALLD---WYetlgikltlapFSLFGV----SIAIFLGFRNSVCYARFSEARLLLGALLIACRNI 96 
                 4.89*************************9999999888...4444444556677888888....********************************** PP

  Bestrophin  94 arqvrglsdeegrlarrtilrylvlllvlffralssrvrkrfptle..hlleagllteeeakilenkywvplqWavsllrrlaerlkelakegrikddq 190
                  rqv +++   ++++r +++      l++f+ +l++++r+++++ +  +ll +      ea+ l  ++   +     l  +l+++l+++++ g i+d++
  EHU01000.1  97 LRQVIAFCP--ADAERVQAM------LLAFCASLKHQLRHTDARDDltRLLGS------EAEVLLGQHSAANM----LHLQLSQWLAKQRQIGVISDIV 177
                 ******855..555555555......99****************998666644......45557766777777....6677777888899*******99 PP

  Bestrophin 191 .alkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllq............faffffGllkvaeqlenP 276
                  +  +++++ln++ a+lg++er++++p+P+vY +++ r+vyl+++l               lP f+l+             ++++f+ l+ +ae+le P
  EHU01000.1 178 wS--TIDNNLNQIAAVLGGCERLASMPVPFVYDLLLRRTVYLFCAL---------------LP-FALAPdlhamtplvsmfISYTFLSLDTLAEELEMP 258
                 66..******************************************...............99.9999999999999999999**************** PP

  Bestrophin 277 FGedddDlelnal...idrnl 294
                 FG+++++l+++a+   i++nl
  EHU01000.1 259 FGYKNNHLPMDAIcinIEINL 279
                 *************97777776 PP

>> BofA  SigmaK-factor processing regulatory protein BofA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.7   0.00018       1.7      18      63 ..      23      70 ..      10      75 .. 0.81
   2 ?    1.4   0.1     0.042   3.7e+02      26      46 ..      83     103 ..      81     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
        BofA 18 killkllinavlGlvlLflvNll.gavfglh.ipiNlitaliagflGi 63
                 il++l++n+++ l++L l+++    +++l+  p++l+ + ia flG+
  EHU01000.1 23 DILFRLFLNLLMSLLALALLDWYeTLGIKLTlAPFSLFGVSIAIFLGF 70
                689******************776777777744788888889988886 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.042
        BofA  26 navlGlvlLflvNllgavfgl 46 
                 +++lG++l+ + N+l +v+ +
  EHU01000.1  83 RLLLGALLIACRNILRQVIAF 103
                 789**********99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2202.24
//
Query:       EHU01001.1  [L=232]
Description: outer membrane porin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-78  264.7   8.0    1.6e-78  264.5   8.0    1.0  1  Porin_1    Gram-negative porin
      6e-13   49.2  16.8    7.7e-13   48.9  16.8    1.1  1  Porin_4    Gram-negative porin
  ------ inclusion threshold ------
      0.075   13.1  16.0       0.21   11.7  16.0    2.0  1  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5   8.0   2.7e-82   1.6e-78     102     340 .]       1     232 []       1     232 [] 0.97

  Alignments for each domain:
  == domain 1  score: 264.5 bits;  conditional E-value: 2.7e-82
                 TSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS......SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CHHC. CS
     Porin_1 102 vlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnn..rnlkksngdgygvslsYeveGfalsvagayarsdrtakqkl 198
                 +lp  ggd+ a+ d f+t r+ gv+t+rn dFfGlv g n a+qy+gkn++tstnn   ++++ ngdg+ +s+sY+++ f+ls agay++ +rt+ q+ 
  EHU01001.1   1 MLPVWGGDS-AYNDAFLTARSGGVLTWRNKDFFGLVKGWNIAAQYEGKNDRTSTNNagLQVSRANGDGFALSTSYDFD-FGLSFAGAYSSLQRTQAQN- 96 
                 79999***9.6******************************************999666788****************.*****************99. PP

                 .....TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEE..EEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETTSTCCEEEEEEEEE CS
     Porin_1 199 elkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvg..asgianktqnlevvaqyqfdfGlrPsiaYvqskgkdlegkkgdndlvkyvdv 295
                      a + g+g+k +vwa+++kYdan+iylaa+Y+et nat++   a+g+ank+ n+e vaqyqf  GlrPs++Yv skgkd+eg +gd+dl+ky +v
  EHU01001.1  97 -----AATFGRGDKGQVWATSVKYDANQIYLAAMYGETLNATPMPssATGFANKARNMEFVAQYQFLNGLRPSLSYVTSKGKDIEG-IGDADLYKYSSV 189
                 .....6889*********************************9977799*************************************.************ PP

                 EEEEECCSSEEEEEEEEEE-S-TTSSCCTSSTSC-EEEEEEEEEE CS
     Porin_1 296 GatYyFnKnmsayVdykinlldkdddkelgistddivavglvyqF 340
                 GatYyFnKnms+y +y+inll+k++   lg++tddi+avglvyqF
  EHU01001.1 190 GATYYFNKNMSVYGEYRINLLKKNN--PLGLATDDITAVGLVYQF 232
                 *************************..79***************9 PP

>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9  16.8   1.3e-16   7.7e-13     137     305 ..      11     206 ..       3     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.3e-16
     Porin_4 137 fd....srdsnsiiyyspk.....fgGftagasyafgeddntnglagsvagdsddndafglgagyafggvglavaaays.....qgdneada....... 214
                 ++    +++s++++ +++k       G  ++a+y+ ++d+++ +++++ + ++ + d+f+l+ +y+f   gl++a ays     q+     +       
  EHU01001.1  11 YNdaflTARSGGVLTWRNKdffglVKGWNIAAQYEGKNDRTS-TNNAGLQVSRANGDGFALSTSYDFD-FGLSFAGAYSslqrtQA-----Qnaatfgr 102
                 333445889999999999998555569*******95555555.667777788889***********84.88********7764422.....22246799 PP

     Porin_4 215 ..dldawglgasvslggfklgasyadaendaaaaa......adadlygvgasytv.galtvgaaygnydd...agandadatsy.glgatYnLskrtdl 300
                   + + w+ +++++ +++ l a y+++ n+++  +      ++a+++++ a+y++ + l+ +++y + ++   +g +dad  +y ++gatY ++k++++
  EHU01001.1 103 gdKGQVWATSVKYDANQIYLAAMYGETLNATPMPSsatgfaNKARNMEFVAQYQFlNGLRPSLSYVTSKGkdiEGIGDADLYKYsSVGATYYFNKNMSV 201
                 9999*********************7776666555888999************************888888898899999999946************* PP

     Porin_4 301 yaeya 305
                 y+ey+
  EHU01001.1 202 YGEYR 206
                 ****7 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  16.0   3.5e-05      0.21      38     178 .]      51     232 .]      14     232 .] 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.5e-05
   OMP_b-brl  38 vgsds.........gfgfgvgagyefndnvgvegglsysgdkdysgs.............gktdikinllsvpvnagyafnlsdsvlpyggaGlg.... 110
                 + +++         g+gf ++  y+f+  +++ g +s ++   ++                + +++ n+ ++ + +g ++n   +  p    G++    
  EHU01001.1  51 TSTNNaglqvsranGDGFALSTSYDFDFGLSFAGAYSSLQRTQAQNAatfgrgdkgqvwaTSVKYDANQIYLAAMYGETLNA--TPMPSSATGFAnkar 147
                 2222234455555566777777777766666555555422222222122344555545333333333344433334444433..323333444444447 PP

   OMP_b-brl 111 .................ytkvevdvsgngasdsdtdfglgl.gaGveyaladnwslkaeYrytdlksdadndlknntfq.vgvgyrF 178
                                   ++v+ ++++   +  +++  + +  +G+ y++++n+s+ +eYr++ lk+++  +l +++++ vg+ y+F
  EHU01001.1 148 nmefvaqyqflnglrpsLSYVTSKGKDI--EGIGDADLYKYsSVGATYYFNKNMSVYGEYRINLLKKNNPLGLATDDITaVGLVYQF 232
                 7777777777777778766677777777..66677777777699*********************9988888888666537999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1707.02
//
Query:       EHU01002.1  [L=406]
Description: succinylornithine transaminase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.2e-122  407.4   0.2   6.5e-122  407.1   0.2    1.1  1  Aminotran_3      Aminotransferase class-III
    0.00087   18.3   0.0     0.0015   17.6   0.0    1.4  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.012   14.7   0.0      0.018   14.2   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
      0.091   12.0   0.1       0.23   10.7   0.1    1.6  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.1   0.2  1.4e-125  6.5e-122       9     405 ..      21     396 ..      14     397 .. 0.97

  Alignments for each domain:
  == domain 1  score: 407.1 bits;  conditional E-value: 1.4e-125
                  SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHH CS
  Aminotran_3   9 lllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKl 106
                  + +v  +aeG+ ++d++gk y+D++++iav++lGhahP++ +a++eqa  l+h+  + +tnep+l+la+ l++++    d+vf++nsG+eA+e+AlKl
   EHU01002.1  21 ASFVPVRAEGSTVWDQQGKDYIDFAGGIAVNALGHAHPALQQALQEQASRLWHTG-NGYTNEPVLRLAKHLIDATFA--DRVFFCNSGAEANEAALKL 115
                  457889*************************************************.*********************..******************* PP

                  HHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETT CS
  Aminotran_3 107 arkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqge 204
                  ark a+ +  ++k+ i+afk+afHGrtl+++s++g+ + y+++f p+++++ +++++d                 l +  + ++d+++AvivEp+qge
   EHU01002.1 116 ARKVAHDRFGNHKSGIVAFKNAFHGRTLFTVSAGGQ-PAYSKDFAPLPADIQHAEFND-----------------LASAAALISDQTCAVIVEPVQGE 195
                  ***999999***************************.********************9.................66667788*************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacaval 302
                  gGvv+a+p+fl+ lrelc+kh++lli+DEvq+G+GrTG l+A++h+gv+pD++t+aKal+gG+p+ a+l++++++q++ +g hg+T+gGnpla ava 
   EHU01002.1 196 GGVVPAEPAFLRSLRELCDKHQALLIFDEVQSGVGRTGSLYAYMHYGVTPDVLTSAKALGGGFPIGAMLTREDLAQVMGVGTHGTTYGGNPLASAVAG 293
                  ************************************************************************************************** PP

                  HHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHH CS
  Aminotran_3 303 avleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidelle 400
                  +v+e+i++ ++++ ++   + + ++L++l+++ + +k+vRg+Gl+i++ l ++   k k+i  +a ++Gv++l aG nv+r++p+l i+++e++ ++ 
   EHU01002.1 294 KVMELINRPEVMDGVRMRHDWIVAALNDLNQRLHLFKTVRGLGLLIGAVLNDDFAGKAKQINLAAADQGVMVLIAGANVVRFAPALNISEQEVKTGMA 391
                  ********************************9***************9****99999**************************************** PP

                  HHHHH CS
  Aminotran_3 401 ilkka 405
                  ++ +a
   EHU01002.1 392 RFAQA 396
                  99886 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.3e-07    0.0015      53     182 ..      88     230 ..      72     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.3e-07
                  HHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.....-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE....GGGHHHH--TTEE CS
  Aminotran_5  53 aelinaeseeeiiftsGtteainlvalslars.....lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld....ldelekllnektk 141
                  ++li a+ ++++ f+ +++ea++++++ +++       +++  iv  ++  h+ ++  + +  +  +  +++pl ++ +      l  +++l++++t+
   EHU01002.1  88 KHLIDATFADRVFFCNSGAEANEAALKLARKVahdrfGNHKSGIVAFKNAFHGRTLFTVSAGGQPAYSKDFAPLPADIQHAefndLASAAALISDQTC 185
                  789******************9998766544444476678889999****************9999999988765543332233399999******** PP

                  EEEEESBETTTTEB....--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 142 lvaithvsnvtGti....qpveeigklakkkgalvlvDaaqavgh 182
                  +v++  v+ + G++      + ++ +l+ k++al++ D +q+ + 
   EHU01002.1 186 AVIVEPVQGEGGVVpaepAFLRSLRELCDKHQALLIFDEVQSGVG 230
                  *************922223466778889999**********9665 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     4e-06     0.018     129     240 ..     170     270 ..      47     327 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4e-06
                    EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--.HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTT CS
  Aminotran_1_2 129 hldlealeealkeapegnkktkvilvesphNPtGtvat.leeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKaf 223
                     +dl +  +++++      +t+ ++ve ++   G+v+  ++ l+ l +l++k+ +ll++De+ +g   + + ++  + +v ++     v + +Ka+
     EHU01002.1 170 FNDLASAAALISD------QTCAVIVEPVQGEGGVVPAePAFLRSLRELCDKHQALLIFDEVQSGVGRTGSLYAYMHYGVTPD-----VLTSAKAL 254
                    3444444444554......899************9986156799******************999888755322225555554.....33666776 PP

                    SSGGG-EEEEEEEHHHH CS
  Aminotran_1_2 224 GlaGeRvGyilgnaavv 240
                    G  G+ +G+ l  ++++
     EHU01002.1 255 G-GGFPIGAMLTREDLA 270
                    6.355666666655555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.2e-05      0.23      69     145 ..     142     224 ..      59     232 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.2e-05
                      ESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-GGG.......B---HHHHHHHHHHCT-EEEEE- CS
  DegT_DnrJ_EryC1  69 psltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVhlyG.......qvadmdalkaiaakhglkvieDa 145
                      + +t  a  +++      p ++D++ + +n d a+++a+i  +t a+++  + G       ++a + +l+++++kh+  +i D 
       EHU01002.1 142 TLFTVSAGGQPAYSKDFAPLPADIQHAEFN-DLASAAALISDQTCAVIVEPVQGeggvvpaEPAFLRSLRELCDKHQALLIFDE 224
                      3456677778888899999**********9.9************99996555552233333467799**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2879.44
//
Query:       EHU01003.1  [L=343]
Description: arginine succinyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-140  465.9   0.0   5.3e-140  465.7   0.0    1.0  1  AstA      Arginine N-succinyltransferase beta subunit


Domain annotation for each model (and alignments):
>> AstA  Arginine N-succinyltransferase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.7   0.0    3e-144  5.3e-140       1     336 [.       1     334 [.       1     335 [. 0.99

  Alignments for each domain:
  == domain 1  score: 465.7 bits;  conditional E-value: 3e-144
        AstA   1 MlviRparesDldallelaeesgvgltsLpadeeaLekkiarsersfakeveepgeesYlfvledtetgevvGtsaieaavGleepfysyrvstlvhaS 99 
                 M+viRp++++Dl++l++la+++g gltsLp d ++L+++i+rs +++++    ++e++Y+fvl d+++++ vG++aie+avGl+ep+y++rv+t+vhaS
  EHU01003.1   1 MMVIRPVERDDLSQLMALAAKTGGGLTSLPVDSATLQARIERSLHTWQGM-LPRAEQGYVFVLADSQDNRAVGICAIEVAVGLQEPWYNFRVGTQVHAS 98 
                 9***********************************************98.9*********************************************** PP

        AstA 100 relgvknrievLtlsndltgaselctlfldpeyrkgglgrllsrsRflfiaehrerFaekviaelrGvldedGrspFWealgrhFfsmdFaeadrlsgi 198
                 +el+v+ ++++L+lsnd+tg+selctlfldp+yr g++g lls+sRflf+a++r+ F  +v+ae+rGv+de+G spFW+++g hFfsm+F++ad lsg+
  EHU01003.1  99 KELNVYATLPTLSLSNDHTGSSELCTLFLDPDYRDGKNGYLLSKSRFLFMANFRDCFMARVVAEMRGVSDEQGYSPFWDSVGIHFFSMEFRKADFLSGT 197
                 *************************************************************************************************** PP

        AstA 199 gskefiaeLmPkypiyvslLseeAqaviGkvhektrpalklLekeGfryegyvDiFDaGPtleaeldeirsvresrrlkvkkeeeeeeegekllvantk 297
                 g+k+fiaeLmPk+p+y++ L++eAqaviG+vh+kt+pa+++Le+eGfry++y+DiFD+GPtle+++d+ir+vr+sr l+++ + e++++++ +lvant+
  EHU01003.1 198 GQKTFIAELMPKHPLYLHYLTPEAQAVIGQVHPKTAPARAVLEAEGFRYRQYIDIFDGGPTLECDIDDIRAVRDSRLLTAR-KGEARQDAPLCLVANTD 295
                 *********************************************************************************.99999************ PP

        AstA 298 ledFravlaeleleeeelvlsaeaaeaLevsegdkvrvv 336
                 +++Fr++l++++ ++e++ l+ e+++aL++++gd++rvv
  EHU01003.1 296 YHRFRVALIPVDPSAEHIQLNDEQLQALQCQPGDSLRVV 334
                 *************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2743.81
//
Query:       EHU01004.1  [L=489]
Description: succinylglutamic semialdehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-118  394.7   0.0   5.2e-118  394.5   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.5   0.0  2.9e-122  5.2e-118       1     451 [.       9     453 ..       9     461 .. 0.96

  Alignments for each domain:
  == domain 1  score: 394.5 bits;  conditional E-value: 2.9e-122
                 EET-SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH CS
      Aldedh   1 wvesesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlry 99 
                 w ++es+++ + +P++g+++ +  aa++e+v aa++aA++af+awa+ p++ R++i++++a  le++k  la+++++etGkp +ea +ev+ +i+ +  
  EHU01004.1   9 WLAGESDHFSKQDPVSGDTLWQGGAASSEQVTAACQAARSAFPAWARQPFAARQAIVERFAVQLENHKTALADCIAQETGKPRWEALTEVTAMINKIAI 107
                 78888899******************************************************************************************* PP

                 HHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh 100 yaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198
                  +++ +  +ge     ++ ++  r++P Gv ++  P+NfP +l+ ++++pal+aGN+vv+KP+e tp++a + ++l++eaglP+gv+ +++g g+e+g+
  EHU01004.1 108 SVKAYHARTGEQ----QQGENALRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPATAERTVQLWREAGLPDGVMGLLQG-GRETGQ 201
                 ****99999987....3557999*********************************************************************.****** PP

                 HHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHH.HHHHHHHHHHHHT CS
      Aldedh 199 alvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiy.defveklveaakk 295
                 al++++++d + ftGs  +g +++++ a++  k ++lE+GG+n+liv + aD+d av+ ++++af++aGQ+C++a+rllv+++ + d+f+ +lve a +
  EHU01004.1 202 ALAAEQGIDGLLFTGSAHTGYQLHRQfAGQPEKMLALEMGGNNALIVDDPADIDGAVHIAIQSAFITAGQRCTCARRLLVKRGAAgDAFLTRLVEVAGR 300
                 **************************888999***************************************************76267*********** PP

                 --BS-T.TSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 296 lkvgdp.ldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 l+ g    d++  +G++is a++ek+ +  ++ +++g k+ll     +  +++ ++++P +++ vt  +++  eE+FGP+l+v++++d  +ai++aN+t
  EHU01004.1 301 LQPGAWnADPQPFMGSVISCAAAEKIYAEWQQRVAAGGKILLAM---RWPNRQQALLTPGIID-VTAVDNLPDEEVFGPLLAVMRYDDYPQAIQLANQT 395
                 ****9549**********************************88...5678999********9.9********************************** PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHH CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggke 451
                 +yGL+ g+++ + e+  ++  + +aG v++N++ tgaa+++pfgG+++Sg+ r +  +
  EHU01004.1 396 RYGLSCGLISPSREQFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGNHRVSAWY 453
                 ***************************************************9976644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3878.22
//
Query:       EHU01005.1  [L=441]
Description: succinylarginine dihydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-212  706.1   0.2   1.7e-212  705.9   0.2    1.0  1  AstB      Succinylarginine dihydrolase


Domain annotation for each model (and alignments):
>> AstB  Succinylarginine dihydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  705.9   0.2  9.6e-217  1.7e-212       2     443 .]       3     440 ..       2     440 .. 0.99

  Alignments for each domain:
  == domain 1  score: 705.9 bits;  conditional E-value: 9.6e-217
                 EEEEEEEE---TT-------TT-HHHHHTTT--B-HHHHHHHHHHHHHHHHHTT--EEEE----SS-HHHHHHTT--SSHHHHHHHHHHH-CHHHHHTS CS
        AstB   2 avevnfDGlvGptHnyaGlslGnvasasnakevsnPraaalqGlekmkaladlglkqgvlpPqeRPdlelLrklgfsgsdeevlekaakeapellaaas 100
                 a+e+nfDGlvG tH+yaGls+Gn as++++++ snPr aa+qGl kmkalad+g++qgv+pP+eRP +++Lr+lgfsgsd++vleka k+ap+ll+aas
  EHU01005.1   3 ATEANFDGLVGLTHHYAGLSFGNEASTRHQHQPSNPRLAAKQGLLKMKALADMGFVQGVIPPHERPGIAVLRQLGFSGSDAQVLEKAHKTAPALLSAAS 101
                 79************************************************************************************************* PP

                 --GGG-GGGTEEEE-TTTBTTSSEEEEE---TTSHHHHTSHHHHHHHHHHHS--TTTEEEE----SSGGG---GGGGEEEESSSTTS--EEEEEESB-T CS
        AstB 101 sassmwtanaatvspsaDtadgrvHltpanlvtklHRsleaettkrllkaiFadeekFavHealPeeakfgDeGaanHtRlckeygekgvelfvyGrsa 199
                 sas+mw+anaatvspsaD+ad+rvH+t+anl++k+HRs+ea++t++ll+a+F+d ++F+vH+alP++a+fgDeGaanH+Rl+ +yg++gv+lf+yGr+ 
  EHU01005.1 102 SASAMWVANAATVSPSADSADRRVHFTVANLNNKFHRSIEAPQTAALLRALFRDPRHFVVHDALPQVARFGDEGAANHNRLGGDYGDAGVQLFIYGRDG 200
                 **************************************************************************************************9 PP

                 T..---S-SSS--S-BHHHHHHHHHHTTB-GGGEEEEEB-HHHHTTT--SGGGTEEEETTEEEEETTSBTTHHHHHHHHHHHSTT..-EEEEE-TTTS- CS
        AstB 200 leeskvapkkfpaRqtleaseavarlhglkeertvfaqqnpeaidaGvFHnDviavgneevlflHeqafldkeavlaelrekleeaelelievpeeevs 298
                  +  ++ap+++paRqt+easeavarlh+l++e+++faqqnp++id+GvFHnDviav+n+++lf+H+qaf+d+ ++la+lr++++   + ++evp+++vs
  EHU01005.1 201 QS--DTAPRRYPARQTREASEAVARLHQLSPEKVIFAQQNPAVIDQGVFHNDVIAVSNQQLLFCHQQAFVDQPNLLAQLRDRVPG--FVALEVPTARVS 295
                 76..678******************************************************************************..************ PP

                 HHHHHHHTTTSSEEEE-TTS-EEEEEEHHHHSSHHHHHHHHHHHHSSSSEEEEEEE--HHHHTTT--TTTTEEEEEEEHHHHHHS-GGGB-SHHHHHHH CS
        AstB 299 ledavksYlFnsqlltlpdgemllvvPeecreneavkayleelvasngpikevevvdlrqsmrnGGGPaCLRlrvvlteaelaavnpkvlldeallerl 397
                 ++dav++YlFnsqllt+pdg+m+lv+Pee+r+++ v++yl+e v+  gp+++++v+dlr+sm+nGGGPaCLRlrvvlt +e++avn +vl++++ +++l
  EHU01005.1 296 VQDAVSTYLFNSQLLTRPDGSMMLVLPEESRQHPGVWEYLREQVEGGGPLQSLQVFDLRESMHNGGGPACLRLRVVLTPEEHRAVNLAVLMNDHVFATL 394
                 *************************************************************************************************** PP

                 HHHHHHH--S-B-GGGGG-HHHHHHHHHHHHHHHHHTT--S-SGGG CS
        AstB 398 eewvekhyrdrlaeedladpqlleesrtaldeLtqilklgsvydfq 443
                 ++wv+khyrdrl+++dl dpqllee r aldeLt++l+lg+vy fq
  EHU01005.1 395 NRWVDKHYRDRLTQSDLGDPQLLEEGRVALDELTRLLDLGNVYTFQ 440
                 *********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3488.61
//
Query:       EHU01006.1  [L=331]
Description: succinylglutamate desuccinylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-67  228.0   0.0    1.5e-67  227.7   0.0    1.0  1  AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase f


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.7   0.0   8.4e-72   1.5e-67       4     289 ..      45     321 ..      43     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 227.7 bits;  conditional E-value: 8.4e-72
                 EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC.ESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC.SSTCHHHHHHHHHHHHHHHCHCTC.CC CS
   AstE_AspA   4 kvlisAGvHGnElaGvellrqllkqleead.ilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg.rsldealrateaerladalfaaal.pe 99 
                  +++sAGvHGnE+a+ve+l+ql+  l +++ +l++++lv+l+Np A++ag+Ry+    +d+NR+F gr+++    dea+r+ ++e+ +++++++++ +e
  EHU01006.1  45 ALVLSAGVHGNETAPVEILNQLITPLLRGEkPLQQRMLVVLGNPSALRAGKRYVT---CDINRLFGGRWQQiDDGDEARRVLRLEQTLENFWQRGAcDE 140
                 689**************************99************************...***************************************** PP

                 GCEEEEEEEESSTBCCSSEEEE---SSHHHH..HHHHHHTTTSEEEEEESS--SSHHHHHHHHCTSEEEEEEEES.TTTTCCHHCCHHHHHHHHHHHHC CS
   AstE_AspA 100 adivlDLHtgtrglkhllfaeadiaeaqlqs..lallkalglpavllldekesagfletaaeelgalaftlElGgagrlgaedisrtakgvlnvlahig 196
                  +++lD+Ht+ rg+ h++f ++++++ ++    l++l a+gl+a++ ++ ++ ++f++++ e++ga ++tlElG+a+++g++d+s+++++ +++ a++ 
  EHU01006.1 141 TRWHLDMHTALRGSYHPRFGVLPHNPRPWPDafLHWLGAAGLEALV-FHRSPGGTFTHFSCEHFGAASCTLELGQARPFGENDLSQFSAAFQALAALLY 238
                 *****************************989**************.***************************************************8 PP

                 TCHTT-SCC.CEEEEEEEEEEGGSCCCSSCSEEECCCCSTTTTETCTEEEETTEEEEECTSTEEEEESSSSEEEESCCTSCCTTTTEEEEEEE CS
   AstE_AspA 197 vvagqeavepaklyrvlreldeprdiraeeaGlvefkvklgddveagellakalvldslggekvelrapqdgvivfineaalvekgaalvkva 289
                   + +e+++++ +yrv+ ++++ +          +f++++ dd++++++++++ +l+++ ge++  +++  ++++f+n+++  + +a+l++++
  EHU01006.1 239 GETLPEPAGRPRRYRVCQQITRLSE---------AFQLHMPDDTKNFTAFPQGALLAED-GETRYFVQQAREYVLFPNPHVGLGLRAGLMLIE 321
                 888887899****************.........*************************.88889999999*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2658.48
//
Query:       EHU01007.1  [L=162]
Description: envelope stress induced periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   76.9   6.2    2.7e-21   76.2   6.2    1.4  1  LTXXQ         LTXXQ motif family protein
    2.3e-10   40.8   6.7    5.1e-08   33.2   3.8    2.2  2  Metal_resist  Heavy-metal resistance
  ------ inclusion threshold ------
       0.12   12.2   1.1       0.18   11.6   1.1    1.3  1  L1R_F9L       Lipid membrane protein of large eukaryotic DNA 


Domain annotation for each model (and alignments):
>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   6.2   4.6e-25   2.7e-21       3     103 ..      45     141 ..      43     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 4.6e-25
                 .XXXXSTTTT----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHHTSSS--HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
       LTXXQ   3 egriaklkaeLkLtdaQkaalkalaeaaraeakplkakkeemramrkkvlaanfdetaperlarmeamlearleavkkraealkqfyavLtpEQkakld 101
                  g++++++ +L+Lt++Qk+++ ++++a r e+++   + ee+ra ++ +++++fd++++e++a  e+m ++  +++++++e+++++y+vLtpEQk++ +
  EHU01007.1  45 RGGMDMMFGGLNLTPEQKTKMHEIMKAGRGEMQRP--SIEERRANHAIIASDSFDKAKAEAQA--EKMTANAKANAVAMMETQNKLYNVLTPEQKKQYN 139
                 57899****************************99..**********99**************..********************************99 PP

                 HH CS
       LTXXQ 102 al 103
                 a+
  EHU01007.1 140 AN 141
                 85 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   3.8   8.5e-12   5.1e-08      20     103 ..      34     114 ..       6     123 .. 0.75
   2 !    8.6   0.1   0.00033         2      38      73 ..     125     160 ..     114     162 .] 0.86

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.5e-12
                   XXXXXXXTTHHBH.......HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHH CS
  Metal_resist  20 gpggpppggparg......raellraalgLpaeqraelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaa 103
                   g   p+      +      +++++++ l+L++eq  ++++++++ ++e++     + + rr+ +a +a ++fD+a++ea+++++ a   a
    EHU01007.1  34 GSEKPM------HkpmhrgGMDMMFGGLNLTPEQKTKMHEIMKAGRGEMQRP---SIEERRANHAIIASDSFDKAKAEAQAEKMTANAKA 114
                   223333......15555569**************************776655...5699***********************99887654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00033
                   HHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  38 raalgLpaeqraelraalrdharelralrrelraar 73 
                    ++  L++eq ++++a + +h  e r+++  +  a 
    EHU01007.1 125 KLYNVLTPEQKKQYNANFEKHLTEKRPMHDKAAPAP 160
                   56777************************9987776 PP

>> L1R_F9L  Lipid membrane protein of large eukaryotic DNA viruses
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.1   3.1e-05      0.18      54      86 ..     106     138 ..     103     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
     L1R_F9L  54 nkcsqnatlslklllkalnevidnLaqqekaev 86 
                  k+++na+++  +++++ n++++ L++++k++ 
  EHU01007.1 106 EKMTANAKANAVAMMETQNKLYNVLTPEQKKQY 138
                 5899**************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1766  (0.0984996); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1298.64
//
Query:       EHU01008.1  [L=287]
Description: endonuclease of nucleotide excision repair [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.008   16.4   0.0      0.025   14.9   0.0    1.9  1  GIY-YIG   GIY-YIG catalytic domain
  ------ inclusion threshold ------
      0.065   14.0   0.0       0.17   12.6   0.0    1.6  1  RraB      Regulator of ribonuclease activity B


Domain annotation for each model (and alignments):
>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-06     0.025       3      74 ..      36     104 ..      34     110 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-06
                 EEEEEE..ETTT--EEEEEESSHHHHHHHH.HHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTT CS
     GIY-YIG   3 gvYiir..skenkliYvGstknlekRlkqH.nagkkakytrkkgkkpfeliileifptksealelEkklikkyks 74 
                 gvY +   s +   +Y+G++ nl++R  +H    ++ak  r+    + +++++    +    l lE++ ik+ ++
  EHU01008.1  36 GVYTFHgeSDTLP-LYIGKSVNLRSRVMSHfRTPDEAKMLRQ----SRRVSWIPTAGDLGA-LLLEAQMIKTQQP 104
                 5666662122333.4***************444556666554....455554433333333.3566666666655 PP

>> RraB  Regulator of ribonuclease activity B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05      0.17      10      39 ..     226     255 ..     225     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
        RraB  10 alledGddldkpreiehhfyfedeedlekf 39 
                 al e+G ++++ + i+h+fy  + + le++
  EHU01008.1 226 ALVEEGKQMTQIHVIDHWFYLGSVDSLEEA 255
                 5899****************9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2342.73
//
Query:       EHU01009.1  [L=274]
Description: NAD synthetase, NH3/glutamine-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-72  241.9   0.0    5.8e-72  241.7   0.0    1.0  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.7   0.0   3.2e-76   5.8e-72       2     242 .]      23     265 ..      22     265 .. 0.97

  Alignments for each domain:
  == domain 1  score: 241.7 bits;  conditional E-value: 3.2e-76
                   HHHHHHHHHHHHHH.CTTSEEEEEE-SSHHHHHHHHHHHHHH.........TCGEEEEEE--.SSSTTHHHHHHHHHHHHHHTSEEEE---HHHHHH CS
  NAD_synthase   2 ieelvdflkeyvkk.agakgvvlGlSGGvDSslvaalavkal.........gkenvlalllP.ssvsseedvedalalaenlgievktidikpivra 87 
                   i+++vdflk y+++ +g k ++lG+SGG+DS+l+++la++a+         ++  ++a++lP +++++e+d++dala++++  +++ +++ik++v a
    EHU01009.1  23 IRTSVDFLKAYLTRhSGLKALILGISGGQDSTLTGKLAQMAItelrqetgdNDYTFIAVRLPyGVQADEQDCQDALAFIQP--DRSLVVNIKEAVLA 117
                   78899******9762677*******************************877889**************************..************** PP

                   HHHHHHHHH...-HHHHHHHHHHHHHHHHHHHHHHHTEEEB---BHHHHTTT-S-TTTTT--SBETTTTS-HHHHHHHHHHTT--HHHHCS--B--S CS
  NAD_synthase  88 feqelkeak...edlakgNlkaRiRmailyaianklnllvlgTgnksElvvGyfTkyGDgaadlapiaellKtevkeLakelnvPervlkkpPsAdL 181
                   +e +lk+a    +d+++gN kaR+Rm+++y+ia++++ +v+gT++ +E+v+G+fTkyGDg+ d++pi +l+K+++k L+k+l++Pe+++ k+P+AdL
    EHU01009.1 118 SERALKDAGivlSDFVRGNEKARERMKAQYSIAGMTKGVVVGTDHGAEAVTGFFTKYGDGGSDINPIFRLNKRQGKLLLKTLGCPEHLYLKKPTADL 214
                   ********99*************************************************************************************** PP

                   ...STT-BHHHHHSS-HHHHHHHHTHSSSS...HHHHHTTT--HHHHHHHHHHHHHTGGGGSSS CS
  NAD_synthase 182 ...kpgqtDeeeLgikYdelDeiLklvekkkspeeiikekelpaevvekieklvkksehKrklp 242
                      +pg+ De +Lg++Yd++D++L+             +k ++ + ++ ie ++ k+ehKr++p
    EHU01009.1 215 eddRPGLQDEVALGVTYDMIDDYLE-------------GKTIDPDSARIIEGWYLKTEHKRRPP 265
                   *************************.............899********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2073.26
//
Query:       EHU01010.1  [L=396]
Description: Bcr/CflA family drug resistance transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-38  133.2  43.9      1e-38  133.2  43.9    1.7  2  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.046   13.3   0.2       0.12   12.0   0.2    1.7  1  Phage_tail_NK  Sf6-type phage tail needle knob or tip of some


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2  43.9   1.2e-42     1e-38       3     353 .]      17     359 ..      15     359 .. 0.86
   2 ?   -1.9   1.0      0.14   1.2e+03     280     294 ..     370     384 ..     360     393 .. 0.42

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 1.2e-42
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 l+a+l  l +++++palp  la+dl    s+++l lt+  lg ++++l++G++sd+fGr r l l+l+l+++++l +++a +    ll++r++qGl+++
  EHU01010.1  17 LLAALGPLCIDLYLPALP-QLASDLATPTSTAQLSLTAGLLGLGAGQLLFGPMSDKFGRLRPLTLSLTLLFIASLGCALA-QTIdQLLLARLFQGLAGA 113
                 67788889999*******.8******99*********************************************8888874.55559************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 +++ ++ a+++d++++ e +r ++ll++ ++l++i +p+lgg+l++ l Wr++f++l ++++l+++l+   l e+ p  +r+ +       + a+ + a
  EHU01010.1 114 GGAVLSRAVARDMYNGHELTRFFALLMLVNGLAPIGAPVLGGALMTVLDWRGIFVVLSGIAILLILLARGKLHESLPVDRRSQG--S----VFAAYA-A 205
                 ****************************************************************88644444444444444422..2....333333.5 PP

       MFS_1 200 wkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 ++++ +++ ++ ++l+  ++++ g++++   +p+ lqe +gls     ++ +a+ +++ +i++  ++rl   +g  r l  +l l+++a+ +l+ +++t
  EHU01010.1 206 LGQVITHRAFMgFCLTQGFMMS-GMFAYIGASPFVLQEIYGLS-PQAFSFCFAANGIGLVIASQTSARLCPLWGEYRVLKGGLMLAFVASSALLAAGLT 302
                 9999999977556666666665.88889999999*********.3333333666666666666666666666*************************** PP

       MFS_1 298 ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfn.tagslggalgp 353
                 + ++ lllv +++++   g++ +++++la+++ + ++ag+as++++ t+++lg++  p
  EHU01010.1 303 HAPLPLLLVALFFSIaSNGVIATTAASLAMQSQG-QRAGSASAVIGvTMFTLGALAVP 359
                 999999999999***9****************98.***********999999998766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.14
       MFS_1 280 allllllaalglall 294
                 ++ l+++++++la+l
  EHU01010.1 370 SMTLTIFGCFMLAIL 384
                 222222222222222 PP

>> Phage_tail_NK  Sf6-type phage tail needle knob or tip of some Caudovirales
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.3e-05      0.12     134     163 ..     309     338 ..     288     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
                    EEEEEEE---TTSHHHHH-B-EEEEEESS- CS
  Phage_tail_NK 134 illatffsvdkdgflatngstltiqsngas 163
                    +l+a ffs+  +g +at  ++l++qs+g  
     EHU01010.1 309 LLVALFFSIASNGVIATTAASLAMQSQGQR 338
                    6899**********************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2830.21
//
Query:       EHU01011.1  [L=111]
Description: DNA-binding transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   47.6   0.4    1.3e-12   47.3   0.4    1.1  1  SmpA_OmlA  SmpA / OmlA family
  ------ inclusion threshold ------
      0.012   15.8   0.1      0.018   15.2   0.1    1.3  1  DUF4148    Domain of unknown function (DUF4148)
       0.45   11.1   3.2       0.67   10.6   3.2    1.3  1  LPAM_1     Prokaryotic membrane lipoprotein lipid attachment 


Domain annotation for each model (and alignments):
>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.4   2.2e-16   1.3e-12       2      69 ..      28      94 ..      27      96 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.2e-16
                HHTTSHHHHT--TT-BHHHHHHHH-S-SEE.-SSSSS.EEE.EEEEETTE.....EEEEEEEE-TTSBEEE CS
   SmpA_OmlA  2 nvvtqeqvdqlkpGmtkeqVryllGsPslt.dtfdpn.rwd.YvynfkrggkaveqqvlavyFdddglvrs 69
                ++vt++ v+++k+Gmt++qVr++ G  s++  +++++ +++ Yv   ++g+     q+++v+++d g+v +
  EHU01011.1 28 SYVTKPVVKDVKKGMTRQQVRQIAGPASTEiTMVHARgTCQtYVIGERDGK----AQTYFVSYNDMGRVMN 94
                69***********************************************95....9***********9976 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   2.9e-06     0.018       7      35 ..       4      49 ..       1      49 [. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-06
     DUF4148  7 aaalaaavaaaaala.................ahskspkTRAqVra 35
                ++  +aa+++ aal+                  + k + TR+qVr+
  EHU01011.1  4 VMGCIAAALTLAALSgcttydraesyvtkpvvKDVKKGMTRQQVRQ 49
                444566667777777789**************999**********7 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.2   0.00011      0.67       1      18 []       1      21 [.       1      21 [. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
      LPAM_1  1 MKKi...llalgalllLsGCs 18
                M K    + a++ l++LsGC+
  EHU01011.1  1 MNKVmgcIAAALTLAALSGCT 21
                778888899***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 884.83
//
Query:       EHU01012.1  [L=136]
Description: hypothetical protein CKS_3380 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1222.28
//
Query:       EHU01013.1  [L=463]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-103  346.0  34.8   3.3e-103  345.7  34.8    1.1  1  SDF       Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.7  34.8  1.8e-107  3.3e-103       1     390 []      29     443 ..      29     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 345.7 bits;  conditional E-value: 1.8e-107
         SDF   1 LllqiliglvlGlviGll.........elvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglila 90 
                 L+ ++l+glv+G+++Gl+         ++vk+++ +++++g+++++ll+m+++Plvf+si s++a+l++a++lgk+++ t++++l+tt+iAa++g+++ 
  EHU01013.1  29 LSKKVLVGLVFGVAFGLAlqfiygsnsDTVKASIGWFNVVGNGYVQLLQMIVMPLVFVSILSAVARLHNASSLGKISFLTIGVLLFTTAIAALVGVFVT 127
                 5689************99********999********************************************************************** PP

         SDF  91 lllkpg.........selaleassakeaekketdslldlilslipsnifeala...egnvlavivfailfGialaalgekg....epllkffeslnevv 173
                  l++++         ++++l+a +++   k +  + ++lils+ip+n+f++l+    +++++v++fa ++G+a+  l +      +++l+ +++l++ v
  EHU01013.1 128 GLFHLNatglvqgaqETARLSAIQNNYVGKVADLTAPQLILSFIPKNPFADLTgasPTSIISVVIFAAFLGVAALHLLKDDevkgQRVLTAIDTLQSWV 226
                 ***********99988888899999999999999*****************9977678***************999988656777************** PP

         SDF 174 mkvvkivmklaPigvfaliaslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpalltAfsTaSSaAtLPvtlecaekn 272
                 mk+v+++mkl+P+gv+al++++va ++l+ +++l++f+++ ylgl i +++v  ll l ++++np++f++k++p+l +Af+++SSaA++P+++e+++++
  EHU01013.1 227 MKLVRLIMKLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLGI-MFVVHGLL-LSVNGINPMRFFRKVWPVLTFAFTSRSSAASIPLNVEAQTRR 323
                 ***********************************************.45555555.559*************************************** PP

         SDF 273 lgvsesiasfvlPlGatinmdGt.alyeavaaifiaqlfgve.lslgqllllvlvatlasiGaagvPgaglvalllvlsalglpvegialilaidrllD 369
                 lgv+esiasf +++Gati+++G+ +ly++++a+++a ++g++ ++   +++lv + tl+s G+agv g++++a+l+vl a+glpv+ +al+++i++l+D
  EHU01013.1 324 LGVPESIASFSASFGATIGQNGCaGLYPTMLAVMVAPTVGINpFDPLWIATLVGIVTLSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISIEPLID 422
                 ******************************************999****************************************************** PP

         SDF 370 mfrTavNvtGdavaalivakl 390
                 m+rTa+Nv+G ++a  +++++
  EHU01013.1 423 MGRTALNVNGAMTAGSLTSRW 443
                 *************99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.33
# Mc/sec: 4218.44
//
Query:       EHU01014.1  [L=196]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-32  112.1   6.7      2e-32  111.8   6.7    1.0  1  YdjM       LexA-binding, inner membrane-associated putative h
  ------ inclusion threshold ------
      0.026   14.0   0.5      0.041   13.4   0.5    1.3  1  HupE_UreJ  HupE / UreJ protein
      0.069   13.0   3.9        1.9    8.3   1.7    2.2  2  DUF2227    Uncharacterized metal-binding protein (DUF2227)


Domain annotation for each model (and alignments):
>> YdjM  LexA-binding, inner membrane-associated putative hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   6.7   3.4e-36     2e-32       1     163 [.       1     160 [.       1     166 [. 0.86

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 3.4e-36
        YdjM   1 MdgltHallGaalglalaallgaake.....avllavavlgAllPDiDhpsstlgrklgllskklaklvgHRgftHSllflallalvlllllrlfgrsa 94 
                 M+   H+ +++a ++ +     ++ +     ++l+ + +l+ llPDiDhp+s lg++l++ls+ +a+ +gHRgftHSl+++a+  +++ + + + +   
  EHU01014.1   1 MTAEGHIFFAVASAIFAKRAELTPVMaqadwWHLIPASLLTCLLPDIDHPKSLLGQRLRWLSHPIARAFGHRGFTHSLFAVAAGLWLFQINVPKSWPVP 99 
                 89999****9999999988888888899**99*******************************************************999999999987 PP

        YdjM  95 lrlglllllgvlsHlllDlltkyGvpllwPfskkkvrlsllfiiidplltllsrrglvalelvllvlyl 163
                 + +  +++lg+lsH+++D+lt++GvpllwP + +++rl++l   + +      + + + l+l+l++ +l
  EHU01014.1 100 ADVLQGMTLGYLSHIVADMLTPAGVPLLWPCR-WRFRLPILNSQKGN------QLERA-LCLCLMAYAL 160
                 777777*************************4.67777777664444......33555.5555555444 PP

>> HupE_UreJ  HupE / UreJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   6.9e-06     0.041      27      73 ..      62     114 ..      48     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-06
   HupE_UreJ  27 aHPll......GlDHLlamvavGlwaaqlggrallllplafvaamlvGallgl 73 
                 +HP+       G+ H l+ va Glw +q++  + + +p+ ++  m++G l ++
  EHU01014.1  62 SHPIArafghrGFTHSLFAVAAGLWLFQINVPKSWPVPADVLQGMTLGYLSHI 114
                 55553333333999**********************************98876 PP

>> DUF2227  Uncharacterized metal-binding protein (DUF2227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.7   0.00033       1.9      47      84 ..      45      79 ..       6      92 .. 0.75
   2 ?    5.0   0.1    0.0034        20     143     164 ..     100     121 ..      84     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00033
     DUF2227 47 PDlDia.skqykrWgilrwlWlPYqkllrHRsllSHgli 84
                PD+D   s        lrwl +P  + + HR+ ++H+l 
  EHU01014.1 45 PDIDHPkSL---LGQRLRWLSHPIARAFGHRG-FTHSLF 79
                666654343...33459***************.***986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0034
     DUF2227 143 lalllGlelgamlHllsDwvvs 164
                   +l G+ lg ++H+++D++ +
  EHU01014.1 100 ADVLQGMTLGYLSHIVADMLTP 121
                 56789*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1402.66
//
Query:       EHU01015.1  [L=249]
Description: 2-deoxyglucose-6-P phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-25   87.8   0.0    1.1e-24   87.5   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    4.3e-17   63.1   0.0    1.6e-15   57.9   0.0    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    7.2e-08   33.0   0.0    1.8e-07   31.8   0.0    1.7  2  HAD             haloacid dehalogenase-like hydrolase
    0.00023   21.2   0.0    0.00039   20.4   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
       0.13   12.4   0.0          7    6.8   0.0    2.4  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0     3e-28   1.1e-24       2     177 ..      11     190 ..      10     191 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 3e-28
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee.....kieellrkyneekkkkevkpydgvkelLeeLkeag 95 
                 +FD+Dg+l+d+e+l+ qa + ++   +++   + e    +gl  ++++r   e+   ++       ++++ + +e     +  +++gv+++L   k++g
  EHU01015.1  11 LFDMDGLLIDSEPLWDQAEMDIFSTLNIDLTRRHESPDTLGLRIDQTVRMWYETLPWSGpsqeaVTQRIIARAMELIAI-NRPLLPGVESALSLCKQHG 108
                 8****************************999******************99998877786666666666666665555.7899*************** PP

       HAD_2  96 yklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 +k g+v+ + r ++e+ l+ +++++yFdv  ++e+   +KP+p+v+++a e l++++ +++  +Ds +++ a+k+a +++i+
  EHU01015.1 109 LKTGLVSASPRFMLEQVLAMFNLNHYFDVLSSAEHLPYSKPHPQVYLNAAEALGIDPLHCVALEDSVNGMVASKAARMRSIV 190
                 *******************************************************************************997 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   4.5e-19   1.6e-15       4     209 ..      10     184 ..       7     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 4.5e-19
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtval 102
                  +fD+dG L+++ep     +++a            e  i+  l      r ++ +  +      ++    + w + l          g  q++    ++
  EHU01015.1  10 ALFDMDGLLIDSEPL----WDQA------------EMDIFSTLNIDLTRRHESPDTLGL-----RIDQTVRMWYETL-------PWSGPSQEAVTQRII 80 
                 689999999999965....4444............333355555556666556666666.....7888888888888.......777778888888888 PP

                 HTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 103 lqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgv 200
                    ra ++++i  p  + p+++ a+   k+ g++++l++ + + + e ++  ++ ++yfd+  +++    +kp+p+ ++ a++ L+++p ++++ +D+v
  EHU01015.1  81 A--RAMELIAINRP--LLPGVESALSLCKQHGLKTGLVSASPRFMLEQVLAMFNlNHYFDVLSSAEHLPYSKPHPQVYLNAAEALGIDPLHCVALEDSV 175
                 8..***********..*******************************999999999******************************************* PP

                 HHHHHHHHT CS
                 xxxxxxxxx RF
   Hydrolase 201 nDaaalaaA 209
                 n++ a +aA
  EHU01015.1 176 NGMVASKAA 184
                 ****99998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0     5e-11   1.8e-07       1     139 [.      10     136 ..      10     176 .. 0.57
   2 ?   -2.7   0.0       1.8   6.4e+03     120     160 ..     205     238 ..     181     245 .. 0.59

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5e-11
         HAD   1 alfDfDgTLldgdsle.........lllrfllrrgaprlwralreklllalfrellrldraglaellea.......llaglseelaaelerfvaevirp 83 
                 alfD+Dg L+d+++l+          l   l+rr++++               + l l+ +++ +++++         ++ +++++a++ +++ ++ rp
  EHU01015.1  10 ALFDMDGLLIDSEPLWdqaemdifsTLNIDLTRRHESP---------------DTLGLRIDQTVRMWYEtlpwsgpSQEAVTQRIIARAMELI-AINRP 92 
                 79999999999975555554444332222233333333...............3344444444444444221111122222222223333333.34444 PP

         HAD  84 klldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrlt 139
                  ll pg+  +l+ +++ G ++ +vS+++r+++e +la ++    l++      +++
  EHU01015.1  93 -LL-PGVESALSLCKQHGLKTGLVSASPRFMLEQVLAMFN----LNH------YFD 136
                 .35.9***********************************....655......222 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
         HAD 120 aelgadevlat..elevdd.rltgelglegkpvrgegkvaalre 160
                 a +     l++  +l +++ rl+g+  +  +++       ++++
  EHU01015.1 205 ADVK----LSSltQLTREHlRLNGK--GAVTCCIP----LKINA 238
                 4444....44444555555566666..66666666....55555 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   0.00039       2      56 ..     146     199 ..     145     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TT CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpe 56 
                     ++KP+p +y  a+e+lg+dp ++++  D+    + + ++a ++s+ +    ++++
      EHU01015.1 146 YSKPHPQVYLNAAEALGIDPLHCVALEDS-VNGMVASKAARMRSIVIPAASHQDD 199
                     79***************************.**************99877666664 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.03   1.1e+02       2      19 ..      11      28 ..      10      39 .. 0.84
   2 ?    6.8   0.0    0.0019         7      15      51 ..      93     129 ..      86     156 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.03
                 EEESTTTSEETTEE-TTH CS
  Hydrolase_6  2 lfDidGvLwrgdkaipga 19
                 lfD+dG L++ + + ++a
   EHU01015.1 11 LFDMDGLLIDSEPLWDQA 28
                 8********988766665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0019
                  E-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHH CS
  Hydrolase_6  15 aipgaaealnalraagkpvvllTNnsskseeeyakkl 51 
                  ++pg++ al  ++++g ++ l++ + +   e++++ +
   EHU01015.1  93 LLPGVESALSLCKQHGLKTGLVSASPRFMLEQVLAMF 129
                  79*********************99988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1999.60
//
Query:       EHU01016.1  [L=178]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-77  257.9   1.5    3.8e-77  257.7   1.5    1.0  1  YniB       YniB-like protein
  ------ inclusion threshold ------
      0.025   15.2   0.3      0.025   15.2   0.3    1.8  2  OAD_gamma  Oxaloacetate decarboxylase, gamma chain
      0.052   13.5   0.4      0.052   13.5   0.4    2.0  2  RseC_MucC  Positive regulator of sigma(E), RseC/MucC
       0.13   12.1   3.4        2.6    7.9   1.2    2.3  2  DUF2721    Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> YniB  YniB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.7   1.5   8.6e-81   3.8e-77       1     166 []      15     177 ..      15     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 257.7 bits;  conditional E-value: 8.6e-81
        YniB   1 vvGwvifipallstlisllkllyaksekkeginavladfikvlvelvrfntpfLnvFWknsPvPdfkellassniaFlliylliFvGlalqasgarlsr 99 
                 v+Gwvif+ allst+isll++l+++sekk gi+av+ dfi+v+v+++rfntpfLnvFW+nsPvP+f+ +    n+ F++iy+liFvGlal asgar+ r
  EHU01016.1  15 VAGWVIFLLALLSTIISLLSFLFKHSEKKPGIDAVMLDFIHVMVDMIRFNTPFLNVFWQNSPVPEFNGQ---MNLGFWFIYILIFVGLALEASGARMGR 110
                 79****************************************************************998...9************************** PP

        YniB 100 qvkeireeiedqlilekakGeegktreeleerivvprhtillqifpLyilPviiavigyvllkllgl 166
                 qv+++re+iedq+ile+akG++g+tr++lee+++vprhti+lqifpLyilP++ia++gy+ll+llg+
  EHU01016.1 111 QVRHVREGIEDQMILEQAKGSDGRTRQQLEEKVRVPRHTIFLQIFPLYILPLVIAIAGYFLLSLLGF 177
                 ****************************************************************996 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   5.6e-06     0.025      13      40 ..      18      45 ..      16      50 .. 0.89
   2 ?   -3.8   0.5         4   1.8e+04      19      24 ..      92      97 ..      88     103 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.6e-06
   OAD_gamma 13 vVFvvLilLslvislfskiikkkakkkk 40
                 V + L+lLs +isl+s+++k+ +kk+ 
  EHU01016.1 18 WVIFLLALLSTIISLLSFLFKHSEKKPG 45
                6999*********************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4
   OAD_gamma 19 ilLslv 24
                 +L++v
  EHU01016.1 92 YILIFV 97
                444443 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.41   1.8e+03      97     109 ..      21      33 ..       9      51 .. 0.51
   2 ?   13.5   0.4   1.1e-05     0.052      55      88 ..     142     175 ..     137     178 .] 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.41
   RseC_MucC  97 algallglvlgfl 109
                 +l+all +++++l
  EHU01016.1  21 FLLALLSTIISLL 33 
                 3333333333322 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.1e-05
   RseC_MucC  55 evgieeksllkaallvYllPllllilgallgsal 88 
                 +v +++ +++ +++ +Y+lPl++ i+g++l s+l
  EHU01016.1 142 KVRVPRHTIFLQIFPLYILPLVIAIAGYFLLSLL 175
                 5889999***********************9987 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.2   0.00058       2.6      96     118 ..      15      37 ..       8      40 .. 0.89
   2 ?    4.3   0.0     0.008        36      11      76 ..      97     159 ..      93     178 .] 0.56

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00058
     DUF2721  96 llaailfvlalllllvslllflr 118
                 ++  ++f+lall++++sll fl+
  EHU01016.1  15 VAGWVIFLLALLSTIISLLSFLF 37 
                 57789****************96 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.008
     DUF2721  11 igllllvltnRlariadrirq.LedeleelaeeeeedeelakeiknlrrRarlirrailllvlsall 76 
                 +gl l +  +R++r + ++r+ +ed+   l++ + +d++ +++++   + +r+ r+ i+l ++ + +
  EHU01016.1  97 VGLALEASGARMGRQVRHVREgIEDQ-MILEQAKGSDGRTRQQLE---EKVRVPRHTIFLQIFPLYI 159
                 67778888899999999999954444.334444445566666655...4444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1378.98
//
Query:       EHU01017.1  [L=297]
Description: putative phosphotransferase/kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.9e-110  367.3   0.0   5.5e-110  367.1   0.0    1.0  1  Fructosamin_kin  Fructosamine kinase
    1.7e-18   67.5   1.7    2.1e-18   67.1   1.7    1.1  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.099   12.0   0.0    1.9  2  APH_6_hur        Aminoglycoside/hydroxyurea antibiotic resist


Domain annotation for each model (and alignments):
>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.1   0.0  9.2e-114  5.5e-110       1     287 [.       1     285 [.       1     286 [. 0.99

  Alignments for each domain:
  == domain 1  score: 367.1 bits;  conditional E-value: 9.2e-114
  Fructosamin_kin   1 mwkaiaqllsealgkafeiteaekveggeineayllseeeqrfFvklnekealemFeaEaesLealaetqtirvPkvlavGelkdasfLvleyL 94 
                      mw+ai++ll+e++g+a eit+++++ gg+++ a+l++ +eq++Fvk+n+++ +++F  Ea++L +l++tqt+rvP+v+ vG+ +d sfL+ley+
       EHU01017.1   1 MWSAISRLLNEQFGNA-EITQRHELPGGDVHPAWLIRYGEQDVFVKCNSRDKVSLFSWEADQLALLRRTQTVRVPDVYGVGSDRDYSFLLLEYI 93 
                      8**************9.***************************************************************************** PP

  Fructosamin_kin  95 elklekkesaaelgqqLaklHraseqkefGfdvdntigktpqpNewqssWaeFfaeqRlgvqlelakekglefakieelvervaellskhqpkp 188
                      + +  + +sa++lgqqLa+lH++seq++fGfd+dn + +tpqpN+w ++W+ FfaeqR+g+ql++a+ekg+ ++++e++++ v+++l++h p+p
       EHU01017.1  94 KPQPLDPQSAYQLGQQLARLHQWSEQPQFGFDFDNNLTSTPQPNSWLRRWSVFFAEQRIGWQLQIAAEKGILYGDAERIIDCVQRTLASHPPQP 187
                      ***8888*************************************************************************************** PP

  Fructosamin_kin 189 sllHGdLWsgNaaltkdgepvifdPaayygdrEvdlamtelfggfpsefyegYqsivpldegyeeRkelYqLYhlLnhlnlFgggylsqaqkli 282
                      sllHGdLW  N+a +++g p ifdPa+y+gdrE+dlam+++f ++p+++++gY++ +pl +g+++R+++YqLY+lLn++n+Fgg++l +aq ++
       EHU01017.1 188 SLLHGDLWPANCAGSETG-PWIFDPACYWGDRECDLAMLSWFTDLPKAIFDGYHQSWPLPDGFSQRQPVYQLYYLLNRANVFGGNWLGAAQFAV 280
                      ******************.************************************************************************999 PP

  Fructosamin_kin 283 qkllk 287
                       +ll+
       EHU01017.1 281 GQLLD 285
                      99986 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   1.7   3.6e-22   2.1e-18       3     228 ..      22     243 ..      20     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 3.6e-22
                 EEE--.SSCEEEEEEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHH CS
         APH   3 relsggasnrtylvttpagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealge 100
                 +el+gg   + +l+  ++++++++ n+       ++ e++ l+lL+++   +vP v+     + ++ + f+l+ey+ +++l++        + +++lg+
  EHU01017.1  22 HELPGGDVHPAWLIRYGEQDVFVKCNSRD-KVSLFSWEADQLALLRRTQTvRVPDVYG---VGSDRDYSFLLLEYIKPQPLDP--------QSAYQLGQ 108
                 7899999999*******************.9***************66556*******...88999999**************........8899**** PP

                 HHCCHHCH..-STTTB-.............SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC.. CS
         APH 101 flaalhqvd.paalpla.............dflaqdlellrqlesatarllaselld..lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpd 183
                  la+lhq + +++ +++             + +++ +++++q+  ++ +  a++     ++e++ + v ++la + p   +++llHgDl p N     +
  EHU01017.1 109 QLARLHQWSeQPQFGFDfdnnltstpqpnsWLRRWSVFFAEQRIGWQLQIAAEKGILygDAERIIDCVQRTLASHPP---QPSLLHGDLWPANCAGS-E 203
                 ********888888888777777777777788888888889999994322222222244444444446666666666...9**************99.8 PP

                 TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHHHH CS
         APH 184 dgrvtGviDfedaglgpplyDlavllrswtseldpeflaallray 228
                  g+   ++D  +  +g++ +Dla+l   w  +l  +  +++ + +
  EHU01017.1 204 TGPW--IFDPAC-YWGDRECDLAMLS--WFTDLPKAIFDGYHQSW 243
                 8999..****86.6***********9..56788888888888877 PP

>> APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.13   7.8e+02      65      79 ..      82      96 ..      76     123 .. 0.57
   2 ?   12.0   0.0   1.6e-05     0.099     147     198 ..     175     225 ..     139     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.13
   APH_6_hur 65 deeesalLLErlsge 79
                d + s lLLE+++++
  EHU01017.1 82 DRDYSFLLLEYIKPQ 96
                555677777777654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.6e-05
   APH_6_hur 147 aiaaeLleepselrpLHgdlhhenvLagerrgWlaidPkglvGergfdlanl 198
                  +++ L ++p +  +LHgdl  +n   +e  +W+  dP    G+r  dla l
  EHU01017.1 175 CVQRTLASHPPQPSLLHGDLWPANCAGSETGPWI-FDPACYWGDRECDLAML 225
                 4678899999999************999989995.8***********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2361.68
//
Query:       EHU01018.1  [L=100]
Description: hypothetical protein CKS_3386 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-32  110.1   0.1    4.3e-32  110.0   0.1    1.0  1  GhoS      Endoribonuclease GhoS


Domain annotation for each model (and alignments):
>> GhoS  Endoribonuclease GhoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.1   2.4e-36   4.3e-32       1      93 [.       1      93 [.       1      94 [. 0.99

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 2.4e-36
                ......--EEEEEE--GGGHHHHHHHHHHHHHTTEESEEE-SSS-EEE-TTSEEEE---S-HHHHHHHHHHGGGTSS----EEEEEEHHHHHT CS
        GhoS  1 massdvtrYvvtvkyhekslseinelnsvltragFsltlaDeeGkpheLgtntfglisalseeeieelaaglaesalgkkpevevltveeylk 93
                m+s+d++rYvvt++y+e +ls++++l   lt  gFs+tl D+ G+ heLgtn+fg++++l+e  ++++a + +esalg+kp+v+ +t++++l+
  EHU01018.1  1 MSSGDLHRYVVTFHYQEAGLSDVLNLTGALTSGGFSTTLMDDSGTAHELGTNSFGIVTTLDEAALKQQALAAGESALGQKPDVTLTTLDDFLR 93
                89*****************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 762.28
//
Query:       EHU01019.1  [L=253]
Description: uncharacterized DUF481 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-53  182.2  10.6    1.5e-53  182.0  10.6    1.1  1  DUF481           Protein of unknown function, DUF481
     0.0052   16.9  16.4       0.01   16.0  16.4    1.6  1  OMP_b-brl        Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
        1.4    9.0   4.4       0.42   10.6   1.0    2.0  2  HemolysinCabind  RTX calcium-binding nonapeptide repeat (4 co


Domain annotation for each model (and alignments):
>> DUF481  Protein of unknown function, DUF481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0  10.6   2.5e-57   1.5e-53       2     211 ..      47     252 ..      46     253 .] 0.98

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 2.5e-57
      DUF481   2 elGlslktGNtettslnaalklkrrtgrwrlslkaeyeygesngettaekyrvslqydyklserlylfalgsyetDrfsgldsratlgaGlGyrlidtd 100
                 ++G+ ++tGNt+++sl+a +++++ t++  +sl++++ ++++n+e+++e y v ++++y++s   ylf+++s+  Dr++g+d r +l aG+G+++++ +
  EHU01019.1  47 SAGYLAQTGNTTSSSLTAQTNMTWYTESMAYSLWGNAANTSANDERSSETYNVGARSRYNMSAYDYLFGQASWLSDRYNGYDGRDVLTAGYGRQILNGP 145
                 79************************************************************************************************* PP

      DUF481 101 ktklsleaGpgyrytkytdeeeeedeeevilrlsldyeykisdnvsftqdlevevnleggsnttlrsetgltvkltdalslkisyevdydsdppe.gkk 198
                  ++l++e Gpg+ry++y+++    +++++ + ++++y+++++d+++f q ++v+ +l  g++tt++setgl+v ++d+++lk++y+v+++++ppe   +
  EHU01019.1 146 VHSLRAEFGPGVRYDDYREG---GHKTQALAYGAVSYQWQLTDTTKFIQGVSVLSSL--GDDTTVNSETGLQVAINDHFALKLAYNVTWNNNPPEsAPD 239
                 ********************...********************************77..************************************778* PP

      DUF481 199 ktDtrlsvsLvys 211
                 +tDt+++v L+y+
  EHU01019.1 240 HTDTKTTVMLTYA 252
                 ************7 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  16.4   1.7e-06      0.01      24     159 ..      79     232 ..      10     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.7e-06
   OMP_b-brl  24 vggglglskvkvdgvgsdsgfgfgvgagyefndnvgvegglsysgdkdysgs.....gktdikinlls.................vpvnagya.fnlsd 99 
                 + g++++++++  +  s+ ++++g++  y+++ +  + g++s+++d++++ +               +                 ++  ++y+ ++ ++
  EHU01019.1  79 LWGNAANTSAN--DERSSETYNVGARSRYNMSAYDYLFGQASWLSDRYNGYDgrdvlT---------AgygrqilngpvhslraeFGPGVRYDdYREGG 166
                 22333322222..333334688888888999888888899999999877774444430.........23334455566666554455556665444332 PP

   OMP_b-brl 100 s...vlpyggaGlgytkvevdvsgng.....asdsdtdfglglgaGveyaladnwslkaeYrytdlks 159
                      l yg + +++  ++++  ++       s+ ++d+ ++ + G+++a++d+++lk+ Y++t+ + 
  EHU01019.1 167 HktqALAYGAVSYQWQLTDTT--KFIqgvsvLSSLGDDTTVNSETGLQVAINDHFALKLAYNVTWNNN 232
                 268899********9755444..3335577*********************************98754 PP

>> HemolysinCabind  RTX calcium-binding nonapeptide repeat (4 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   7.1e-05      0.42       6      29 ..     121     144 ..     116     144 .. 0.90
   2 ?   -3.3   0.1       1.6   9.7e+03      14      17 ..     200     203 ..     198     203 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.1e-05
  HemolysinCabind   6 nDtlvGgaGnDtiyGgaGnDtlyG 29 
                      +D+ +G +G D++++g G  +l+G
       EHU01019.1 121 SDRYNGYDGRDVLTAGYGRQILNG 144
                      7999**************999998 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
  HemolysinCabind  14 GnDt 17 
                      G+Dt
       EHU01019.1 200 GDDT 203
                      3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2140.36
//
Query:       EHU01020.1  [L=642]
Description: threonyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-51  173.7   0.1    1.4e-50  171.8   0.0    2.0  2  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    6.9e-22   77.4   0.9      2e-21   75.9   0.9    1.8  1  HGTP_anticodon  Anticodon binding domain
    3.9e-14   52.5   0.0    7.4e-14   51.6   0.0    1.4  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad
    1.9e-13   50.2   0.3    1.7e-12   47.2   0.1    2.3  2  TGS             TGS domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.51   2.3e+03      60      98 ..     125     162 ..     122     199 .. 0.77
   2 !  171.8   0.0   3.1e-54   1.4e-50       1     178 [.     318     528 ..     318     529 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.51
                   SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  60 reFhqkdgyvfhaeaslddslrdlikaisriferlglef 98 
                   +++   +  v ++++ ++++ rd++ a  +++++  l +
    EHU01020.1 125 HQLAETNYDV-VKKKVSWQEARDVFAARGEVYKTTILDE 162
                   5555444444.3445589999999999999999988764 PP

  == domain 2  score: 171.8 bits;  conditional E-value: 3.1e-54
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlg 95 
                   ++++++n rey++kP+n++++v+++++  l+s+r LPl+++++++++R+E+s +++GL+Rvr+F+q+d+++f++e++l+ +++ +i+ ++++++++g
    EHU01020.1 318 FTTSSEN-REYCIKPMNCPGHVQIFNQG-LKSYRdLPLRMAEFGSCHRNEPSgALHGLMRVRGFTQDDAHIFCTEDQLRAEVNSCIRMVYDMYSTFG 412
                   5677787.*****************966.***777*****************9******************************************** PP

                   .SCEEEEEEGTTSC.................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEE CS
                   xxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  96 lefraiielmsaks.................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksv 159
                   +e+ +++++++ ++                                 a+y++k ef+++++ l++++++gt+q + ++l++rl+at++ enn ++++
    EHU01020.1 413 FEKIVVKLSTRPEKrigsdetwdraeedlaaalnenniafeyqpgegAFYGPKIEFTLYDC-LDRAWQCGTVQLD-FSLPKRLDATYVGENNDRQTP 507
                   *********888778899*******************************************.*************.********************* PP

                   EEEEEE.EE.HHHHHHHHHHH CS
                   xxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 160 imicaa.ig.veRllsaileq 178
                   +mi++a +g +eR++++++e+
    EHU01020.1 508 VMIHRAiLGsMERFIGILTEE 528
                   *******9*********9997 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.9   4.5e-25     2e-21       1      93 [.     541     630 ..     541     631 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 4.5e-25
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     q+vv+++++      ey++ l ++L++agirv+ d +ne+ig+kire+ l  +p+++v G+ke+e g+v+vr+r  ++  ++++d +vekl++
      EHU01020.1 541 QAVVMNITD---GQAEYVETLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVDVFVEKLQQ 630
                     899999999...6779***************************************************************************97 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   1.6e-17   7.4e-14       3      44 .]     172     219 ..     171     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.6e-17
                 EEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   3 vvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 ++++++ +v++C+G+Hvpn++++ +fk++       +++s++k+l+RIy
  EHU01020.1 172 LYHHEE-YVDMCRGPHVPNMRFCHHFKLQkisgaywRGDSDNKMLQRIY 219
                 588998.*****************************************9 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   3.7e-16   1.7e-12       3      60 .]       4      61 ..       2      61 .. 0.97
   2 ?   -0.1   0.0      0.22   9.7e+02      40      55 ..     100     117 ..      96     120 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 3.7e-16
                EEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS  3 vytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60
                +++PdG++ +++r  +v+D+A  I+ +lak++i+++VnG++v+   ++ d++ v I+t
  EHU01020.1  4 ITLPDGSQRTYDRPVSVMDIALDIGPGLAKACIAGRVNGELVDAVDPITDDASVAIIT 61
                677*****************************************************98 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.22
                 CS..EEEETTSBB-SSEE CS
         TGS  40 nG..qrvgldhvLedgdv 55 
                 nG    v++d++L ++d+
  EHU01020.1 100 NGfyYDVDIDRTLTQEDI 117
                 5555579**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4362.12
//
Query:       EHU01021.1  [L=183]
Description: protein chain initiation factor IF-3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-36  122.4   0.3    1.1e-35  121.4   0.3    1.5  1  IF3_C     Translation initiation factor IF-3, C-terminal doma
    5.7e-32  109.8   0.0    1.2e-31  108.8   0.0    1.6  1  IF3_N     Translation initiation factor IF-3, N-terminal doma
  ------ inclusion threshold ------
        0.2   12.1   0.0       0.27   11.6   0.0    1.2  1  DUF3632   Protein of unknown function (DUF3632)


Domain annotation for each model (and alignments):
>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.3   1.9e-39   1.1e-35       1      86 []      91     180 ..      91     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 1.9e-39
                 S-EEEEEEESS--HHHHHHHHHHHHHHHHHT-EEEEEEE--S-TTSHHHHHHHHHHHHHHHTTT...TEEEEEEE.EE-SSEEEEEEEES CS
       IF3_C   1 ievKEiklrpkidehDlevKlknarkFLeegdkvKvtlrfrGReiahkelgkevleriaeelee...vakvekkp.klegrqmimvlapk 86 
                 i+vKEik+rp +d++D++vKl+n+ +FLeegdk K+tlrfrGRe+ah+++g+evl+r+ ++l++   +a ve+ p k+egrqmimvlapk
  EHU01021.1  91 IQVKEIKFRPGTDDGDYQVKLRNLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVRKDLCDdldLAIVESFPsKIEGRQMIMVLAPK 180
                 79************************************************************9766699****999*************8 PP

>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0     2e-35   1.2e-31       1      70 []      15      84 ..      15      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 2e-35
                ETTS--SSEEEEE-SSS-EEEEEEHHHHHHHHHHHTSEEEEEESSSSS-EEEEE-HHHHHHHHHHHHHHH CS
       IF3_N  1 iNeqIrarevrlvdedGeqlGvistreAlrlaeekgldLVevspnaepPVcrimdygkfrYeqkkkekea 70
                iN++Ira evrl +++GeqlG++s+reAl+ aee+g+dLVe+spnaepPVcrimdygkf+Ye++k  ke+
  EHU01021.1 15 INSEIRATEVRLTGVEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQ 84
                8*******************************************************************97 PP

>> DUF3632  Protein of unknown function (DUF3632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05      0.27      83     150 ..      28      90 ..      15     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
     DUF3632  83 aagvlkdslyalwalreaLEseeeeeeaekeekldadlaaAaqWillageeLyelseeekdkdekdee 150
                 +   ++ +++++++lreaLE  + ee+  +  +++ + +   + i   g+ Lye+s+++k++++k++ 
  EHU01021.1  28 G---VEGEQLGIVSLREALE--KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKV 90 
                 2...32499***********..4445556666666666667777888899999999988887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1476.15
//
Query:       EHU01022.1  [L=65]
Description: 50S ribosomal subunit protein L35 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-24   85.2   8.1    3.3e-24   85.1   8.1    1.0  1  Ribosomal_L35p  Ribosomal protein L35


Domain annotation for each model (and alignments):
>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   8.1   1.9e-28   3.3e-24       1      60 [.       2      61 ..       2      62 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.9e-28
  Ribosomal_L35p  1 PKmKThkgakKRfkvtgsGkikrkkagkrHlltkKstkrkrrlrktalvskadakrlkkl 60
                    PK+KT +ga+KRfk+t+sG +krk+a+ rH+ltkKstkrkr+lr +++vsk+d  ++  +
      EHU01022.1  2 PKIKTVRGAAKRFKKTASGGFKRKHANLRHILTKKSTKRKRHLRPKGMVSKGDLGLVVAC 61
                    9****************************************************9888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 556.45
//
Query:       EHU01023.1  [L=118]
Description: 50S ribosomal subunit protein L20 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-49  165.9  10.1    2.7e-49  165.7  10.1    1.0  1  Ribosomal_L20  Ribosomal protein L20
      0.002   18.1   0.5     0.0028   17.6   0.5    1.2  1  SMC_ScpA       Segregation and condensation protein ScpA


Domain annotation for each model (and alignments):
>> Ribosomal_L20  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7  10.1     3e-53   2.7e-49       1     107 []       3     109 ..       3     109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 3e-53
                    XXX.XXXXXXXXXXXXX--SSS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHCCTTS---HHHHHHH CS
  Ribosomal_L20   1 RvkrgvaarkrrkkilklakgyrgrrsklyrvakqavekalqyayrdRkkkkrdfrklwitrinaaarenglsYskfingLkkanielnRkvLadl 96 
                    Rvkrgv+ar+r+kkilk+akgy+g+rs++yrva qav+ka qyayrdR+++kr+fr+lwi+rinaaar+ng+sYs+fingLkka ie++Rk+Lad+
     EHU01023.1   3 RVKRGVVARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGMSYSRFINGLKKAAIEIDRKILADI 98 
                    9*********************************************************************************************** PP

                    HHH-HHHHHHH CS
  Ribosomal_L20  97 AindpeaFkal 107
                    A+ d+ aF+al
     EHU01023.1  99 AVFDKVAFTAL 109
                    ********986 PP

>> SMC_ScpA  Segregation and condensation protein ScpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.5   3.1e-07    0.0028      84     142 ..      46     105 ..      42     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    SMC_ScpA  84 eYrkykeeaklfkeleaerlksfsk.arsdleefikeveevavkieksvfklieafnkll 142
                  Yr +++  + f++l + r+   ++ + +  ++fi+ +++ a++i+ ++++ i+ f k+ 
  EHU01023.1  46 AYRDRRQRKRQFRQLWIARINAAARqNGMSYSRFINGLKKAAIEIDRKILADIAVFDKVA 105
                 59*****************955555155789**********************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 963.10
//
Query:       EHU01024.1  [L=395]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   71.9   0.0      1e-19   71.0   0.0    1.4  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.8e-24     1e-19      31     209 ..     104     320 ..      86     325 .. 0.75

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 5.8e-24
   DDE_Tnp_1  31 kykygyklhiavdtrsglilsvvit.pgnvhdskglkqlldelrpr....kgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk......... 115
                 + ++ +++ +++d+rs ++l  +i+ + + + s+  k +l++l+++    ++++v++DaG+  ++++ ++++ g+d++ r+++nt+l+           
  EHU01024.1 104 QEYHVLRASLICDGRS-IPLLSHIVpSSKQNSSEIQKGFLNALAETikpeTKVIVITDAGFR-NAWFSHIKSLGWDFVGRIRGNTQLQLNnngegwlrt 200
                 34678899*******6.677777762444444444444777777777778***********6.**************************9999988877 PP

   DDE_Tnp_1 116 .............g...............aeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkr 186
                              +                + k +gr +k+ r++i++ +q r ++   +k+++++++  +s +++++e++ ly++R+qiE++F++ k+
  EHU01024.1 201 geiiagdrpeylgEgtlsqstpcdghfyiQKTKPKGRKHKRARCRIRRSKQVRCGR-SAAKEPWLLFV--SSAEFKPREIMKLYSRRMQIEQNFRDEKS 296
                 77776666655550555555566666666777789999999999999999999999.66666666555..45569************************ PP

   DDE_Tnp_1 187 k.fgldrlryrglnrveaqlllll 209
                   fg++ + ++++ + ++q+l ll
  EHU01024.1 297 ErFGFGLRASYSRSAGRIQVLSLL 320
                 999977666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3379.27
//
Query:       EHU01025.1  [L=327]
Description: phenylalanine tRNA synthetase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-107  358.0   0.1   2.9e-107  357.7   0.1    1.1  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    1.8e-26   91.8   1.7    2.7e-26   91.3   1.1    1.6  2  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin
     0.0002   20.9   0.0    0.00064   19.2   0.0    1.8  2  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
  ------ inclusion threshold ------
      0.082   12.5   0.3       0.42   10.2   0.1    1.8  2  FAD-oxidase_C    FAD linked oxidases, C-terminal domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.7   0.1  6.4e-111  2.9e-107       2     245 .]      92     326 ..      91     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 357.7 bits;  conditional E-value: 6.4e-111
                   .-TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHHTTS CS
  tRNA-synt_2d   2 idvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtlekk 98 
                   idv+lpg+rie+g+lhp+t+++++i+ +f elgf++v+gpe+e++++nfdaLn+p +hpaR+ +dtF++       + ++lLRt+t+ vqirt++++
    EHU01025.1  92 IDVSLPGRRIENGGLHPVTRTIDRIETFFGELGFAVVTGPEIEDDYHNFDALNIPGHHPARADHDTFWF-------DATRLLRTQTSGVQIRTMKNQ 181
                   8********************************************************************.......6689***************** PP

                   -SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE CS
  tRNA-synt_2d  99 kppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmv 195
                   +pp++ii++grv+R+d  D+th+++Fhq+egl+vd+n+++++lkg+l+++l+++f++++++rfrpsyfpftePsaevdv+   k++kwlE+lg+Gmv
    EHU01025.1 182 QPPLRIIAPGRVYRNDY-DQTHTPMFHQMEGLIVDKNINFTNLKGTLHDFLNNFFEEDLQIRFRPSYFPFTEPSAEVDVMG--KNGKWLEVLGCGMV 275
                   *****************.*************************************************************88..************** PP

                   -HHHHHHTT-..TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 196 rpevleavgid.eevsgfafGlGveRlamlkygieDiRelvendlrflrqf 245
                   +p+vl++vgid e +sgfafG+G+eRl+ml+yg++D+R+++endlrfl+qf
    EHU01025.1 276 HPNVLRNVGIDpEVYSGFAFGMGMERLTMLRYGVTDLRAFFENDLRFLKQF 326
                   *************************************************97 PP

>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   1.1     6e-30   2.7e-26       2      69 .]      20      87 ..      19      87 .. 0.98
   2 ?   -3.9   0.0         3   1.3e+04      11      19 ..     257     265 ..     255     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 6e-30
                     CCCCCCCCHHHHHCCCCCCCCCCCTTTTCCCCTTTHHHHCCHHHHCCCCCCCCCHHHCCHCCHHHHHC CS
  Phe_tRNA-synt_N  2 dleeLeelRvkyLGkkGeltellkelgklppeeRkeaGkliNelKqeieealeerkeeleaaeleakl 69
                     d+++L+++Rv+yLGkkG+lt ++ +l++lp+eeR+eaG++iNe+Kq+++++l++rke++e+a+l+a+l
       EHU01025.1 20 DIAALDAVRVEYLGKKGHLTLQMTTLRELPAEERPEAGAVINEAKQQVTDRLNARKEAMESAALNARL 87
                     889***************************************************************97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
                      HHHHCCCCC CS
  Phe_tRNA-synt_N  11 vkyLGkkGe 19 
                      v ++Gk+G+
       EHU01025.1 257 VDVMGKNGK 265
                      7899**996 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.73   3.3e+03       1      34 [.      92     125 ..      92     129 .. 0.85
   2 !   19.2   0.0   1.4e-07   0.00064      90     208 ..     178     290 ..     170     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.73
  tRNA_synthFbeta   1 IpstlPkapttegelnkeqklrrklrdllagaGl 34 
                      I  +lP   +  g l++  ++ +++ ++  ++G+
       EHU01025.1  92 IDVSLPGRRIENGGLHPVTRTIDRIETFFGELGF 125
                      6678999999999999999999999999888887 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.4e-07
  tRNA_synthFbeta  90 largnedvrlFEigkvflkdseeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgiek..vefepaehpalhpgrsAeik 181
                      ++++++ +r+   g+v+++d +++     +++ ++++ k+            +f +lkg++  +l+++  e+  ++f+p+  p+ +p  sAe+ 
       EHU01025.1 178 MKNQQPPLRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDKN-----------INFTNLKGTLHDFLNNFFEEDlqIRFRPSYFPFTEP--SAEVD 258
                      5677777888888888888855555556666777777777...........9****************9866457888899999999..57777 PP

  tRNA_synthFbeta 182 vdgk.....evGvlGelhpevleafdlkqrvy 208
                      v gk     ev   G +hp+vl++ +++ +vy
       EHU01025.1 259 VMGKngkwlEVLGCGMVHPNVLRNVGIDPEVY 290
                      76666679988889**************9998 PP

>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.082   3.7e+02     140     179 ..       2      45 ..       1      60 [. 0.76
   2 ?   10.2   0.1   9.4e-05      0.42      97     143 ..      59     102 ..      41     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.082
                    HHHHHHHHHHHHHHHHHH....EEEEEEEEEETTEEEEEEEEEE CS
  FAD-oxidase_C 140 srladlvrdikalldkyg....levvlfgHagdgnlhlyilfdl 179
                    s+la+lv+++ a++d       l++v++ + g  ++  + +++l
     EHU01025.1   2 SQLAELVANATAAIDGATdiaaLDAVRVEYLGKKGHLTLQMTTL 45 
                    7899999999999999989999**********766555444444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 9.4e-05
                    .........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHH CS
  FAD-oxidase_C  97 lvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrla 143
                    ++ + ++++  +++aRk a++   +a+l+a  a+++ D+s+P  r+ 
     EHU01025.1  59 VINEAKQQVTDRLNARKEAME---SAALNARLAAETIDVSLPGRRIE 102
                    33344455559**********...999***************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2406.04
//
Query:       EHU01026.1  [L=795]
Description: phenylalanine tRNA synthetase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-69  232.2   0.0    4.2e-69  231.7   0.0    1.3  1  B3_4             B3/4 domain
    8.1e-55  185.6   0.0    1.6e-54  184.6   0.0    1.5  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
      2e-28   98.7   0.0      4e-28   97.7   0.0    1.6  1  FDX-ACB          Ferredoxin-fold anticodon binding domain
      1e-27   96.0   0.2    5.2e-27   93.8   0.1    2.2  2  tRNA_bind        Putative tRNA binding domain
    1.3e-20   73.4   0.3    1.3e-19   70.2   0.1    2.6  2  B5               tRNA synthetase B5 domain
    0.00046   20.4   0.0       0.36   11.1   0.0    3.3  4  PhetRS_B1        Phe-tRNA synthetase beta subunit B1 domain


Domain annotation for each model (and alignments):
>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.0   1.4e-72   4.2e-69       1     174 []     212     385 ..     212     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 1.4e-72
                 TSSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-TTSEEEETEEEE CS
        B3_4   1 acpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkereldeedlviadsekp 99 
                 acpry++rv++gv+ +a +p+w++++Lrr+gir+i++vVDitNyv+lelgqP+hafDld+++g ivvr+a+ege l++ldg+e  l++++lviad++k+
  EHU01026.1 212 ACPRYLGRVVKGVNVAAATPLWMREKLRRCGIRSIDPVVDITNYVLLELGQPMHAFDLDRLDGGIVVRMAEEGEALTLLDGTEARLSSDTLVIADHQKA 310
                 6************************************************************************************************** PP

                 EEETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHHHHHHHHHH- CS
        B3_4 100 vslagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselcg 174
                 +++ g++gge+s+v+ +T+n++le+a+f+p +i ++arr+gl+++as+r+ergvd +++++a+ ra++ll+ +cg
  EHU01026.1 311 LAMGGIFGGEHSGVNTETQNILLECAWFEPLAITGRARRHGLHTDASHRYERGVDSALQHKAIARATQLLLSICG 385
                 **************************************************************************7 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   0.0   5.3e-58   1.6e-54       1     212 [.     474     684 ..     474     686 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.6 bits;  conditional E-value: 5.3e-58
  tRNA_synthFbeta   1 IpstlPkapttegelnkeqklrrklrdllagaGlnEvitysfvsekeldklleddderkavelanPlsedqsvlRtsLlpglLevlarNlargn 94 
                      Ip++  +a +++ ++ +++   ++++ ll++ G++E+itysfv++k+ + l   ++ ++a+ l  P+s+d+s++R sL+ glL ++ +N++r++
       EHU01026.1 474 IPNVPVQAGLVMTKHREANLSLKRAKMLLVDKGYQEAITYSFVDPKVQQLL---HPGEEALLLPSPISSDMSTMRLSLWTGLLSAVVYNQNRQQ 564
                      677777777778878888888899************************999...9*************************************** PP

  tRNA_synthFbeta  95 edvrlFEigkvflkd.seeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgi.ekvefepaehpalhpgrsAeikvdgke 186
                      ++vrlFE g  f +d +++ ++++  +la+vl+g+r ee+w  +++avdfydlkg +e+ll+  g  + ++f+++ +palhpg+sA i++++++
       EHU01026.1 565 SRVRLFESGLRFVPDtQADLGIRQDLMLAGVLSGNRFEEHWDLARQAVDFYDLKGDLESLLDLTGKlDAITFRAEANPALHPGQSAAIYLHDER 658
                      ***************999999********************************************99*************************** PP

  tRNA_synthFbeta 187 vGvlGelhpevleafdlkqrvyvfEl 212
                      +G++G +hpe+ +++dl++r+ vfEl
       EHU01026.1 659 IGFIGVVHPELERKLDLNGRTLVFEL 684
                      *************************8 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.3e-31     4e-28       1      94 []     701     794 ..     701     794 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.3e-31
                 -SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BES CS
     FDX-ACB   1 SkfPaverDlalvvdekveaaelleavreaagellesvqlfDvYrgkklaegkkSlalrltlqskertLtdeevnaaiekvvealekklgaelR 94 
                 S+fPa +rD+a+vv e+v+aa++++ +++ + + +  v+lfDvYrgk++ eg kSla++l+lq+++rtL++ee++a ++k+v+al+++++a+lR
  EHU01026.1 701 SRFPANRRDIAVVVAENVPAADIIAECKKVGVNQVVGVNLFDVYRGKGVSEGYKSLAISLILQDTSRTLEEEEIAATVAKCVAALKERFQATLR 794
                 89*******************************************************************************************9 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   1.7e-30   5.2e-27       1      95 [.      45     145 ..      45     146 .. 0.95
   2 ?   -1.3   0.0      0.84   2.5e+03       3      35 ..     417     448 ..     416     465 .. 0.78

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 1.7e-30
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEET.TSESE..EETTEEESSEE-EEEC..CESSCEEEEEESST--T CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvva.nlkpk..klrGveSeGMilsaee..ldekevgilelpadvea 93 
                 ++vG+v+e+ +hpnadkL+v+k+++G+ + ++iv+ga+n+++  +++va++++v++  +k+k  klrG+ SeGM++s +e  +++++ gi+elpad+++
  EHU01026.1  45 VVVGEVVECGQHPNADKLRVTKINTGGDRLLDIVCGAPNCRQgLKVAVATVGAVLPgDFKIKaaKLRGEPSEGMLCSFSElgISDDHNGIIELPADAPV 143
                 79******************************************************95555555******************9**************** PP

                 TC CS
   tRNA_bind  94 Ge 95 
                 G+
  EHU01026.1 144 GT 145
                 *8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.84
                 EEEEEEEEEETTSSTEEEEEEEESSSSEEEEEE CS
   tRNA_bind   3 vGkvleaeehpnadkLlvlkvdvGeeeprqivs 35 
                 +G+v++ +++ +    l ++v vG++e  q v+
  EHU01026.1 417 IGHVVSDAQVTDILTRLGCEVSVGSQE-WQAVA 448
                 688888888888888888*******99.66655 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.47   1.4e+03      35      66 ..     153     184 ..     105     185 .. 0.84
   2 !   70.2   0.1   4.4e-23   1.3e-19       1      67 []     406     471 ..     406     471 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.47
                 SSTTCEEEE--TT-TT--SHHHHHHHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5  35 kdkdlllVtvPswRsDlereeDliEEvaRlyG 66 
                  d++++++ v + R D +    ++ +va l G
  EHU01026.1 153 LDDNTIEISVTPNRADCLGIMGIARDVAVLNG 184
                 588999999999****9999999999999888 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 4.4e-23
                 EEEEHHHHHHHHTS---HHHHHHHHHHTT-E.EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   1 vslrvekinkllGidlseeeiikiLkrlgceriekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 ++lr ek+ +l+G  +s++++++iL+rlgce+ + + ++++   P+wR D+  eeDl+EE+aR+yGY
  EHU01026.1 406 ITLRREKLDRLIGHVVSDAQVTDILTRLGCEV-SVGSQEWQAVAPTWRFDMAIEEDLVEEIARIYGY 471
                 689****************************8.*********************************9 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1     3e+03      19      41 ..      16      38 ..       7      85 .. 0.65
   2 !    5.1   0.0    0.0091        27      52      81 ..     154     183 ..     140     185 .. 0.87
   3 !   11.1   0.0   0.00012      0.36       3      36 ..     405     438 ..     403     465 .. 0.89
   4 ?   -3.8   0.0       5.3   1.6e+04      60      67 ..     703     710 ..     702     713 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
   PhetRS_B1 19 lteeeledllfefGlElDeivee 41
                l+   l++ +   GlE+D ++  
  EHU01026.1 16 LDSAALSEQITMAGLEVDGVEPV 38
                55667777788889999988754 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0091
   PhetRS_B1  52 eeviykidipAnryDLLcleglaralkvFl 81 
                 +++++ i +  nr D L + g+ar ++v +
  EHU01026.1 154 DDNTIEISVTPNRADCLGIMGIARDVAVLN 183
                 6678999*****************998876 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00012
   PhetRS_B1   3 tisvkkeaLfkalgkelteeeledllfefGlElD 36 
                 ti++++e+L++++g+++++ +++d+l ++G E+ 
  EHU01026.1 405 TITLRREKLDRLIGHVVSDAQVTDILTRLGCEVS 438
                 89*****************************985 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5.3
   PhetRS_B1  60 ipAnryDL 67 
                  pAnr D+
  EHU01026.1 703 FPANRRDI 710
                 59*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5475.15
//
Query:       EHU01027.1  [L=100]
Description: integration host factor (IHF), DNA-binding protein, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-30  104.5   0.1    2.8e-30  104.4   0.1    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
      2e-07   31.1   0.0    2.5e-07   30.8   0.0    1.1  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    2.4e-06   27.3   0.0    3.7e-06   26.7   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
  ------ inclusion threshold ------
      0.026   14.7   0.0      0.038   14.1   0.0    1.3  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
      0.069   13.2   0.0       0.78    9.8   0.0    2.0  2  HU-DNA_bdg       DNA-binding domain


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.1   7.8e-34   2.8e-30       1      89 [.       3      91 ..       3      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 7.8e-34
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeav 89
                     +tk+e+ e + ek gl+k+dak++ve f++++  aL++ge+v+lsgFG+f ++++++r grnpkTge + i ar+vv+F+p+++lk +v
       EHU01027.1  3 LTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91
                     69************************************************************************************998 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   6.9e-11   2.5e-07      37     121 ..       8      94 ..       2      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 6.9e-11
      HU-HIG  37 LceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkelkka 121
                 ++e   +  +ls+ d k  ++ + +e+++aL++Ge+V+L ++G+F l  k  ++  ++k+ +   i  +++  frpg+klk+++++a
  EHU01027.1   8 MSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNqRPGRNPKTGEDIPITARRVvTFRPGQKLKSRVENA 94 
                 5555556678899999999********************************8788889988888888777527**********9987 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     1e-09   3.7e-06       5      52 ..      10      57 ..       8      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1e-09
  HU-CCDC81_bac_2  5 nsiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslnee 52
                     +++ e+ g+s ++A + +e + ee++++Le++++v+l++ G++ l ++
       EHU01027.1 10 EYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDK 57
                     688999*************************************88765 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.038      14      57 ..      16      57 ..       9      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
  HU-CCDC81_euk_2 14 aglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnr 57
                     +gls+++++  v+ +f ++ ++l+ng++v+l   g+G++ +r++
       EHU01027.1 16 LGLSKRDAKELVELFFEEVRRALENGEQVKLS--GFGNFDLRDK 57
                     689**************************986..6898888887 PP

>> HU-DNA_bdg  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00022      0.78      41      77 ..      14      51 ..       3      57 .. 0.85
   2 ?    1.5   0.0      0.08   2.9e+02     102     116 ..      79      93 ..      74      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00022
                H-TTS-HHHHHHHHHHHHHHHHHHHTTT-EEE.-SSEE CS
  HU-DNA_bdg 41 egtevrketienilnlykrevseaileGysVn.tglgr 77
                e+ +++k ++++ ++l+ +ev +a+++G++V+  g+g+
  EHU01027.1 14 EKLGLSKRDAKELVELFFEEVRRALENGEQVKlSGFGN 51
                5678999************************8346665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.08
                 EEEEE-HHHHHHHHT CS
  HU-DNA_bdg 102 vsltqgkeLrealak 116
                 v +++g++L++++++
  EHU01027.1  79 VTFRPGQKLKSRVEN 93 
                 789*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 793.01
//
Query:       EHU01028.1  [L=335]
Description: vitamin B12 transporter subunit: membrane component of ABC superfamily [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-80  269.1  41.0    5.2e-80  268.8  41.0    1.0  1  FecCD     FecCD transport family
  ------ inclusion threshold ------
       0.27   10.4   0.1       0.39    9.9   0.1    1.2  1  NUP       Purine nucleoside permease (NUP)


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.8  41.0   5.8e-84   5.2e-80       1     312 []      25     324 ..      25     324 .. 0.97

  Alignments for each domain:
  == domain 1  score: 268.8 bits;  conditional E-value: 5.8e-84
       FecCD   1 llllllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgsls 99 
                 lll+l+ +sl++g+ +i p+  ++        + + +v +lrlpr++a++lvGaaLa++G+++Q+++ NpLa+P++lG+ssga++g+v+++l+  ++  
  EHU01028.1  25 LLLALFTVSLCAGERWIGPAAWWSE-------SGRLFVGQLRLPRTVAVMLVGAALALSGVMMQALFTNPLAEPGLLGVSSGAGIGLVAGVLF--SGGA 114
                 6899*******************96.......45689*******************************************************9..899* PP

       FecCD 100 lfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllar 198
                 l++l+l a++gal+++l++l +a  +++ s  +l+L+G+a+++++sa++++ ++++++ +l+++++w++G +sg++ +   +++++ll ++l+++  ar
  EHU01028.1 115 LWSLSLSAIAGALVITLILLHFA--HRHLSVSRLLLTGVALGMICSAMMTWAVYFSSSLDLRQLMYWMMGGFSGIDRRYG-WMMLALLPVILASMTAAR 210
                 ***********************..9*************************************************98877.666778899999****** PP

       FecCD 199 kldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvg.adhrkllplsallGallllladllarlllsptelpvgi 296
                  l+llalg++ A++lG++   +r ll+l++ +l++v+val+G igFvGL++Ph++r lvg +dhr llp+sal+Ga +ll ad++arl+l+++elpvg+
  EHU01028.1 211 ALNLLALGETSARQLGLSLVCWRNLLVLAMGWLVGVSVALAGAIGFVGLVIPHLLR-LVGlHDHRALLPASALAGASVLLGADIIARLALASAELPVGV 308
                 ********************************************************.7777************************************** PP

       FecCD 297 vtaliGapffiylllr 312
                 vta++G p+fi+ll++
  EHU01028.1 309 VTATLGEPLFIVLLVK 324
                 **************97 PP

>> NUP  Purine nucleoside permease (NUP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   4.4e-05      0.39      52      89 ..     151     189 ..     122     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.4e-05
         NUP  52 tGegeinaaasimaLvlsprFdLtk.tYfliaGiaGvnP 89 
                 +  g i +a+ + a+ +s+ +dL++  Y++++G +G++ 
  EHU01028.1 151 VALGMICSAMMTWAVYFSSSLDLRQlMYWMMGGFSGIDR 189
                 44577999999************9957**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2972.80
//
Query:       EHU01029.1  [L=249]
Description: ATPase component of an ABC superfamily vitamin B12 transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-22   79.3   0.0    5.5e-22   78.8   0.0    1.3  1  ABC_tran        ABC transporter
    7.2e-09   35.9   0.1    9.6e-05   22.3   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    2.7e-06   27.0   0.1      0.068   12.6   0.0    2.1  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00092   18.9   0.1      0.002   17.8   0.1    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0018   18.7   0.1     0.0039   17.6   0.1    1.6  1  AAA_16          AAA ATPase domain
     0.0022   18.3   0.1      0.022   15.0   0.1    2.0  1  AAA_22          AAA domain
     0.0025   17.4   1.7     0.0062   16.1   0.2    2.2  3  AAA_25          AAA domain
     0.0026   18.3   0.1      0.004   17.7   0.1    1.2  1  AAA_23          AAA domain
     0.0046   16.9   0.1      0.011   15.6   0.1    1.6  2  RsgA_GTPase     RsgA GTPase
     0.0063   16.7   0.0      0.016   15.4   0.0    1.8  1  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.098   12.3   0.0    1.9  2  AAA_15          AAA ATPase domain
      0.013   15.1   0.1      0.022   14.3   0.1    1.3  1  AAA_27          AAA domain
      0.022   14.8   0.0      0.047   13.8   0.0    1.6  1  MMR_HSR1        50S ribosome-binding GTPase
      0.026   14.3   0.3       0.21   11.3   0.1    2.0  2  AAA_30          AAA domain
      0.033   14.1   0.5       0.85    9.5   0.1    2.2  2  NACHT           NACHT domain
      0.034   14.4   0.0      0.055   13.7   0.0    1.3  1  SbcCD_C         Putative exonuclease SbcCD, C subunit
      0.053   12.9   0.5        0.1   11.9   0.5    1.4  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.054   13.4   0.0      0.092   12.6   0.0    1.4  1  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.079   13.0   0.1       0.68   10.0   0.0    2.0  2  Dynamin_N       Dynamin family
      0.085   13.1   0.1       0.16   12.2   0.1    1.4  1  AAA_28          AAA domain
       0.13   11.8   0.2        0.9    9.1   0.1    2.0  2  SRP54           SRP54-type protein, GTPase domain
        0.2   11.4   0.8        3.3    7.4   0.3    2.2  2  IstB_IS21       IstB-like ATP binding protein
       0.21   10.2   0.0        4.2    5.9   0.0    2.0  2  AAA_13          AAA domain
        0.4    9.4   1.1       0.91    8.2   0.2    1.8  2  ABC_ATPase      Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   7.4e-25   5.5e-22       1     136 [.      14     161 ..      14     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 7.4e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHH..........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..........xxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpelt.vren..........esdeeieka 88 
                 l+ vs  l++g+++ +vG+nGaGKStLl++lagl+ p  G+++l++k l + + + l +  g+lpq+ ql p++  v+            + d+++  +
  EHU01029.1  14 LQPVSGALHAGHLIHLVGPNGAGKSTLLSALAGLE-PITGQMTLQDKALADWPGPALARVRGWLPQQ-QLPPGMMpVYHYlrlhlassgpHNDARLMSL 110
                 678999***************************96.89*****************************.888888756666999**************** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHH.......TSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallk.......kpkllllDEpt 136
                 l++l+l e+  +++    ++LSgG++qrv l++++++       + kll+lDEp+
  EHU01029.1 111 LARLQLAEKLSRPL----NQLSGGEWQRVRLCAVMAQidpqinaDGKLLILDEPM 161
                 **************....****************99744434335689*****97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.3e-07   9.6e-05       4      22 ..      29      47 ..      26      65 .. 0.86
   2 !   11.8   0.0   0.00021      0.16     233     299 ..     123     193 ..      95     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.3e-07
      AAA_21  4 liGpNgsGKSnLLdaldll 22
                l+GpNg+GKS+LL al +l
  EHU01029.1 29 LVGPNGAGKSTLLSALAGL 47
                8***************998 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00021
      AAA_21 233 parelSdGtkrllalltallralkkg....sllliDEpEngLHPkllrrllell.kelsrngaQviltTHSp 299
                 p+++lS G  +  +l + +++ ++      +ll++DEp + L+ + ++ +  l+ +++++ g+ vi+++H+ 
  EHU01029.1 123 PLNQLSGGEWQRVRLCAVMAQIDPQInadgKLLILDEPMTALDVAQQHAVDNLIqELCRA-GVCVIASSHDL 193
                 567788888777777777777776557788**************9999999999777777.*********95 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.7e-05     0.072      26      44 ..      26      44 ..      15      51 .. 0.85
   2 !   12.6   0.0   9.1e-05     0.068     135     199 ..     119     191 ..      88     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.7e-05
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                +  +vGpNG+GKs ll A+
  EHU01029.1 26 LIHLVGPNGAGKSTLLSAL 44
                5679************998 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.1e-05
                 T......CS-HHHHHHHHHHHHHH...HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 x......xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfA...iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 +      +LSgGe + v l  ++A    q      l +lDe   aLD ++ ++v +l++e   +a + vi+ ++
  EHU01029.1 119 KlsrplnQLSGGEWQRVRLCAVMAqidPQINADGKLLILDEPMTALDVAQQHAVDNLIQELC-RAGVCVIASSH 191
                 44444449*****9999998898975545566678************************998.45555555444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.7e-06     0.002      24      43 ..      26      45 ..      16      48 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.7e-06
      AAA_29 24 atlltGpsGsGKSTllDAiq 43
                 + l+Gp+G+GKSTll A++
  EHU01029.1 26 LIHLVGPNGAGKSTLLSALA 45
                56799***********9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   5.2e-06    0.0039      21     163 ..      23     180 ..       9     187 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.2e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrell..ralekd............g.gif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawreklee 103
                 +g  +l+ l+G+ G GKs+l+ +l+  ++++++            g +++ +rg+  q +    + ++  +l r +l      +++      +r +l e
  EHU01029.1  23 AG--HLIHLVGPNGAGKSTLLSALAglEPITGQmtlqdkaladwpGpALArVRGWLPQQQLPPGMMPVYHYL-RLHLASSGPHNDARLMSLLARLQLAE 118
                 33..8999*************999844577777889999999999534446777777774443334455555.44555555555444444445555555 PP

      AAA_16 104 ala.avpelagaea..srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlle 163
                  l+ + ++l+g e    rl+++++++  ++  d++ l+++ + +  +d a++++ ++L ++l 
  EHU01029.1 119 KLSrPLNQLSGGEWqrVRLCAVMAQIDPQINADGK-LLILDEPMTALDVAQQHAVDNLIQELC 180
                 44445555555544556666666666644454455.444444555666666555655555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.9e-05     0.022       7      99 ..      26     159 ..      21     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee..............................erpevvfvtlpsst.....sskdllrellralglelka 70 
                 ++ ++G+ G+GK+tll  l+   ++  + +                               +  ++++  l+ss+          l  ll  l+l  k 
  EHU01029.1  26 LIHLVGPNGAGKSTLLSALAGLEPITGQMTLqdkaladwpgpalarvrgwlpqqqlppgmmPVYHYLRLHLASSGphndaR----LMSLLARLQLAEKL 120
                 5779****************9998877777799999999999999999999999988888766666677777777642222....33333333322222 PP

      AAA_22  71 ............erlsseellealeqalraravielliiDE 99 
                             +r ++ ++++++  +++a ++  lli+DE
  EHU01029.1 121 srplnqlsggewQRVRLCAVMAQIDPQINADGK--LLILDE 159
                 345555999999999999999999999999999..999999 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   8.3e-06    0.0062      26      54 ..      17      45 ..       5      61 .. 0.91
   2 ?   -0.3   0.0      0.92   6.8e+02      93     154 ..     140     163 ..     110     191 .. 0.53
   3 ?   -3.3   0.0       7.5   5.6e+03      51      72 ..     206     226 ..     204     230 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.3e-06
      AAA_25 26 vkgllpagelallaGapgtGKttlaldla 54
                v g l ag+l+ l+G+ g+GK+tl++ la
  EHU01029.1 17 VSGALHAGHLIHLVGPNGAGKSTLLSALA 45
                678899********************998 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.92
      AAA_25  93 vgeal....rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsra 154
                 v++++    ++d++ll+l                                          D    a
  EHU01029.1 140 VMAQIdpqiNADGKLLIL------------------------------------------DEPMTA 163
                 333333333334444444..........................................322222 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.5
      AAA_25  51 ldlalavatGkpwlgpvapeqg 72 
                 l+ ++ va+Gkp    ++peq 
  EHU01029.1 206 LHQGAVVAQGKPCEV-LRPEQL 226
                 778889999999744.566665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   5.3e-06     0.004      23      39 ..      28      44 ..      23      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.3e-06
      AAA_23 23 lItGpNGaGKTTildAi 39
                 ++GpNGaGK+T+l A+
  EHU01029.1 28 HLVGPNGAGKSTLLSAL 44
                589************98 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.5e-05     0.011      96     122 ..      20      47 ..       5      60 .. 0.79
   2 ?   -2.7   0.0       6.5   4.9e+03      56      84 ..     164     191 ..     160     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-05
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpe 122
                  +l+  +++ lvG+ G+GKStL+ al++ 
   EHU01029.1  20 ALHAgHLIHLVGPNGAGKSTLLSALAGL 47 
                  455449999***************9974 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.5
                  GGG--HHHHHHHHHHHHHHTTSEEEE--T CS
  RsgA_GTPase  56 iDlleeeeeleelkeelealgyevllvsa 84 
                  +D+++++  +++l +el ++g+ v++ s 
   EHU01029.1 164 LDVAQQHA-VDNLIQELCRAGVCVIASSH 191
                  56666666.77777777777777776665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.016       1      32 [.      26      59 ..      26     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklg..avllssdt 32
                l+ lvG++G+GKstl+  l+  ++  ++   +d+
  EHU01029.1 26 LIHLVGPNGAGKSTLLSALAGLEPitGQMTLQDK 59
                6889*************99865555544444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013     0.098      25      43 ..      26      44 ..      20      47 .. 0.89
   2 ?    0.7   0.0      0.46   3.4e+02     288     365 ..     118     192 ..      94     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
      AAA_15 25 ltvliGkNnsGKSsileal 43
                l  l+G+N++GKS++l al
  EHU01029.1 26 LIHLVGPNGAGKSTLLSAL 44
                6679*************99 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.46
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++ + pln+ + G  + + l    + +  +  ++++ ++l+++EP + L   +q  + +l++el + +   vi ++H 
  EHU01029.1 118 EKLSRPLNQLSGGEWQRVRLCAVMAQIDPQ--INADGKLLILDEPMTALDVAQQHAVDNLIQELCRAGV-CVIASSHD 192
                 566667777777777777777777777777..9999*********999987777777777777777665.78888885 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     3e-05     0.022      28      48 ..      27      46 ..      14      48 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
      AAA_27 28 lhliyGpNEAGKstalrAisd 48
                +h ++GpN AGKst+l+A+  
  EHU01029.1 27 IH-LVGPNGAGKSTLLSALAG 46
                33.46*************976 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.3e-05     0.047       2      27 ..      27      52 ..      26      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
                EEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivs 27
                + +vG   +GKStL++al g + i++
  EHU01029.1 27 IHLVGPNGAGKSTLLSALAGLEPITG 52
                569***************99554444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00028      0.21      13      40 ..      20      46 ..      12      61 .. 0.83
   2 ?    1.0   0.0      0.41   3.1e+02      85     119 ..     147     186 ..     102     191 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
      AAA_30 13 lltsgdrvavltGpAGtGKttalkalre 40
                +l+ g+ +  l+Gp G+GK+t+l+al+ 
  EHU01029.1 20 ALHAGH-LIHLVGPNGAGKSTLLSALAG 46
                556665.8889*************9975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.41
      AAA_30  85 rlepg.tllivDEagmv....dtkqlaallkaaekagakv 119
                 +++++ +lli DE   +     ++ +++l++++ +ag+ v
  EHU01029.1 147 QINADgKLLILDEPMTAldvaQQHAVDNLIQELCRAGVCV 186
                 5666669999999654444335555666666666666555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0011      0.85       2      21 ..      26      45 ..      25      47 .. 0.89
   2 ?    3.0   0.0      0.12        88      85     126 ..     155     189 ..      75     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                l+ l G++G GK+tLl  la
  EHU01029.1 26 LIHLVGPNGAGKSTLLSALA 45
                6889************9887 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
                 EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  85 lilDglDelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                 lil   De  t l+ +++ +v++l++el+r+    +++++++
  EHU01029.1 155 LIL---DEPMTALDVAQQHAVDNLIQELCRA----GVCVIAS 189
                 555...5555666666668999999999988....5555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.3e-05     0.055      24      85 ..     118     173 ..     106     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.3e-05
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatll 85 
                 ++lsr  ++lSGGe q +   a++    a+++ +   + + +l++LDE    lD   ++++ 
  EHU01029.1 118 EKLSRPLNQLSGGEWQRVRLCAVM----AQIDPQ--INADGKLLILDEPMTALDVAQQHAVD 173
                 46999**********766555555....555554..256789************98877765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00014       0.1      20      48 ..      22      50 ..      11      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
  Mg_chelatase 20 aGgHnlllvGppGsGKtmlakrlpsllpp 48
                    gH + lvGp G+GK+ l ++l++l p 
    EHU01029.1 22 HAGHLIHLVGPNGAGKSTLLSALAGLEPI 50
                  56899******************998764 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.092       4      24 ..      25      45 ..      22      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
  Ploopntkinase3  4 rliylvGqPGaGkstlmaelt 24
                     li+lvG  GaGkstl+++l+
      EHU01029.1 25 HLIHLVGPNGAGKSTLLSALA 45
                    69****************996 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00092      0.68       1      22 [.      27      48 ..      27      56 .. 0.86
   2 ?    0.9   0.0      0.55   4.1e+02     103     145 ..     154     196 ..     115     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00092
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                i +vG   +GKS++l aL g +
  EHU01029.1 27 IHLVGPNGAGKSTLLSALAGLE 48
                6789**************9976 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.55
                 EEEEE---B-SSSGTTSHHHHHHH.STTEEEEEEEETTS-CCC- CS
   Dynamin_N 103 ltlvDlPGldsvnkrdqelvkeyi.kkadiilavtsanhdlsns 145
                 l ++D P ++  ++ +q+ v+++i + +++ ++v +++hdl +s
  EHU01029.1 154 LLILDEP-MTALDVAQQHAVDNLIqELCRAGVCVIASSHDLNHS 196
                 5566666.566677788899999999999999999999998765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00021      0.16       2      20 ..      27      45 ..      26      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
      AAA_28  2 ivitGgestGKTtlleaLa 20
                i ++G+ ++GK+tll+aLa
  EHU01029.1 27 IHLVGPNGAGKSTLLSALA 45
                7799**************9 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0012       0.9       3      23 ..      26      46 ..      24      55 .. 0.89
   2 ?    0.4   0.0      0.57   4.3e+02      97     135 ..     133     171 ..     127     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
                EEEEEESTTSSHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaa 23
                +i lvG++GaGK t l+ La 
  EHU01029.1 26 LIHLVGPNGAGKSTLLSALAG 46
                5789************99995 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.57
                 THHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHH CS
       SRP54  97 ndkelmeelkkikkvvkpdevllvldattgqeavkqaka 135
                 +  +l + +++i   +++d +ll+ld  +   +v+q +a
  EHU01029.1 133 QRVRLCAVMAQIDPQINADGKLLILDEPMTALDVAQQHA 171
                 556788889999999999999999998877777766555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3    0.0044       3.3      49      68 ..      26      45 ..      20      56 .. 0.85
   2 ?    2.1   0.0      0.19   1.4e+02     110     151 ..     153     193 ..     139     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0044
   IstB_IS21 49 nivllGpsGvGKshlaialg 68
                 i l+Gp G+GKs l  al+
  EHU01029.1 26 LIHLVGPNGAGKSTLLSALA 45
                5789***********99996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.19
   IstB_IS21 110 dllilDdlgllpldqaeaellfeviekryerrsiiitsnlpf 151
                 +llilD+  ++ ld a+++ + ++i++       +i+s   +
  EHU01029.1 153 KLLILDEP-MTALDVAQQHAVDNLIQELCRAGVCVIASSHDL 193
                 79****95.678999999999999999998888888886554 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0057       4.2      23      40 ..      31      48 ..      28      63 .. 0.87
   2 ?    2.2   0.0     0.074        55     497     555 ..     124     180 ..     116     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0057
      AAA_13 23 GwNGaGKTtLSrllrsle 40
                G NGaGK+tL ++l+ le
  EHU01029.1 31 GPNGAGKSTLLSALAGLE 48
                99********99999986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.074
      AAA_13 497 aetLSeGEktaIaflYFlkslkeddseigkdkivviDDPvSSLDsnslfivfsliksrl 555
                  ++LS GE   + ++  +++++ +++     k  ++D P+  LD   +  v +li++ +
  EHU01029.1 124 LNQLSGGEWQRVRLCAVMAQIDPQINA--DGKLLILDEPMTALDVAQQHAVDNLIQELC 180
                 578999999999999999999943333..678999********************9998 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0012      0.91     242     265 ..      21      45 ..       6      47 .. 0.82
   2 ?   -0.5   0.0      0.54     4e+02     331     355 ..     142     166 ..     139     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 +  G ++ +vG++  GKsTLL+Al+
  EHU01029.1  21 LHAGhLIHLVGPNGAGKSTLLSALA 45 
                 556668999**************96 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.54
                 HHHHHHHHTT-SEEEEEGGGS-HHH CS
  ABC_ATPase 331 animealeagakllLiDEDtsAtNl 355
                 a+i  +++a+ kll++DE  +A   
  EHU01029.1 142 AQIDPQINADGKLLILDEPMTALDV 166
                 5677777788888888887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2042.79
//
Query:       EHU01030.1  [L=152]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-29   99.7   0.0      1e-28   99.4   0.0    1.1  1  NLPC_P60       NlpC/P60 family
     0.0059   16.3   0.0      0.081   12.6   0.0    2.0  2  DUF1175        Protein of unknown function (DUF1175)
  ------ inclusion threshold ------
      0.014   16.0   0.0      0.026   15.1   0.0    1.5  1  CHAP           CHAP domain
       0.18   11.9   0.0         13    5.8   0.0    2.2  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   2.3e-32     1e-28       1     105 []      45     151 ..      45     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 2.3e-32
                 T-BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHHCCCSEE..EEGGG--TTEEEEESG..TGGESEEEEEEETTEEEEEE.TTEEEEEETTSTT CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafaka.gielprssgeqeaagkkkeiskselkrGDLvffkt..kkgisHvgiYlgngkmlhas.sekvsvsslseky 95 
                 g+pYr+GG+s++++DCsg+v+ +f++  +++lprs+ +q + g++  isk++l +GDLvff+t  +++  HvgiY  ++ ++has s++v  ssl++ y
  EHU01030.1  45 GTPYRYGGMSRKVVDCSGFVYLTFRDKfDLQLPRSTAAQSDIGTR--ISKEDLLPGDLVFFRTgsGENGLHVGIYDTDNAFIHAStSQGVIRSSLDNVY 141
                 89*******************************************..****************9889999***************************** PP

                 BHSCEEECCE CS
    NLPC_P60  96 wkkrllgvrr 105
                 w+k ++++rr
  EHU01030.1 142 WRKVFWQARR 151
                 ******9987 PP

>> DUF1175  Protein of unknown function (DUF1175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.036   1.6e+02      51      66 ..      55      70 ..      49      89 .. 0.83
   2 !   12.6   0.0   1.8e-05     0.081     141     167 ..      94     120 ..      83     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.036
     DUF1175 51 eeerDCaglvryavrE 66
                ++  DC+g+v  + r+
  EHU01030.1 55 RKVVDCSGFVYLTFRD 70
                5678******988775 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.8e-05
     DUF1175 141 qAkpgDllFfdqeddelPyHlmiylge 167
                   +pgDl+Ff+ ++ e   H+ iy  +
  EHU01030.1  94 DLLPGDLVFFRTGSGENGLHVGIYDTD 120
                 568*********************666 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   5.7e-06     0.026       6      70 ..      55     117 ..      48     131 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.7e-06
                 CTT.SHHHHHHHHHHHHSSSSSSSECTCCHHCEEEEEECSTBS--TTEEEEEETTTTBCT-.EEEEE CS
        CHAP   6 ykw.qCvefaywrlrqaggnaddWnnakkakgyknqanvgsstpkvGdivvfdrggeggyG.HVaiV 70 
                  k  +C  f+y  +r       +  +++ a +   +++ +++   +Gd+v+f+ g++ ++G HV+i 
  EHU01030.1  55 RKVvDCSGFVYLTFRDKF--DLQLPRSTAA-QSDIGTRISKEDLLPGDLVFFRTGSG-ENGlHVGIY 117
                 345689999999988553..3333222222.222223355545579******99984.4789***96 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.003        13      86     134 ..      37      84 ..      24      97 .. 0.79
   2 ?    4.4   0.0    0.0083        37      26      60 ..     109     139 ..      94     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.003
  Peptidase_C92  86 aeaalrrlgkpYdfgFeleddrlYCsklVakaykealgikvktvellgk 134
                     ++  +  g+pY +g  ++ + + Cs +V+  ++ + ++++++ +++++
     EHU01030.1  37 NDQLGSWRGTPYRYG-GMSRKVVDCSGFVYLTFRDKFDLQLPRSTAAQS 84 
                    555555568999999.88899999************9999999888776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0083
  Peptidase_C92  26 sefkHvgivvgeegderlvveaaakegvrvtpLse 60 
                     +  Hvgi+  ++      ++a++++gv  ++L++
     EHU01030.1 109 ENGLHVGIYDTDNAF----IHASTSQGVIRSSLDN 139
                    556699999877777....9999*****9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1295.71
//
Query:       EHU01031.1  [L=244]
Description: hypothetical protein CKS_3401 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-11   43.9   0.4    3.3e-11   43.2   0.4    1.3  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.4   1.8e-15   3.3e-11      23     235 ..      20     223 ..       7     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.8e-15
                 SSS-SSEEEEEEEEEEECTTC.EE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CCHHHHHH..HHH.HCCT-GC CS
         EAL  23 lktgkvvgleallrwqhpdgg.lispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladeefleelr..ell.kqsgpsp 117
                  ++g+++++e  +++ h+    +++++ +lp +++++ l+ l r+v    l++ +     +++      nl ++  +de+++++l+  e+l ++ +  p
  EHU01031.1  20 SQEGHLTAIELATQFVHESAPiTLPQDVLLPQLDETQRLRLLQRQVS--LLEKHQT----FFE----THNLLAFMPTDEGMASTLLesEFLtRKIKQLP 108
                 57889999999999999999944477778888888666666666653..3332222....233....45677777777777777765556667777888 PP

                 C-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT-EEEE-S--SH CS
         EAL 118 srLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgikvvaegVete 216
                   L l+i+e+ l  +l++ +  +la+L    ++++l++fg+g ss     +  +  i+ld+++++ l + ++   +++++i+  ++   ++++ gV++e
  EHU01031.1 109 F-LRLDISETFLSLHLGKNN-PLLAALYG-EFKLSLSHFGAGKSSTTAVYDNLFSCIRLDKHFIQSLAKRASFLPFMQSIIDNFRSHCDRMIICGVDDE 204
                 8.********8888999999.****9888.8******************************************************************** PP

                 HHHHHHHHHT-SEE-STTT CS
         EAL 217 eqlealrelgcdlvQGyll 235
                   l+++ +l    +QG l+
  EHU01031.1 205 ILLDKVSHLSNVHLQGALF 223
                 ****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1851.12
//
Query:       EHU01032.1  [L=348]
Description: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.7e-104  347.9   0.0   3.2e-104  347.7   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.7   0.0  1.8e-108  3.2e-104       8     274 ..      41     337 ..      24     338 .. 0.97

  Alignments for each domain:
  == domain 1  score: 347.7 bits;  conditional E-value: 1.8e-108
                   H.HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.............T CS
  DAHP_synth_1   8 a.adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.............g 90 
                   + a+il+G+d rllv++GPCs++dp aal+yA+rl++l+e+++d+lei+mrayfeKp r++vg+kGli+dpdl++++++++++             g
    EHU01032.1  41 RiARILTGDDPRLLVVIGPCSLHDPVAALDYARRLNALREQYQDRLEIVMRAYFEKP-RTVVGWKGLISDPDLDGSFDVNRGIgiarkllidinalG 136
                   1589*****************************************************.*************************************** PP

                   -EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEEEE CS
  DAHP_synth_1  91 lpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerglr 174
                   lp+ate+ld++  q++ad++++++iGArttesq ++e+as+ls+pvg+Kngtd    +a+d+++aa+++++fl+          +t+g+++++++lr
    EHU01032.1 137 LPTATEFLDMVIGQFIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDgnvrIAVDAIRAARTSHMFLSPdkqgqmtiyQTSGNPHGHVILR 233
                   ************************************************************************************************* PP

                   ESTSSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHHHH CS
  DAHP_synth_1 175 ggkktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsdgkqalkygksetdacilk 267
                   ggk++n+++ dva++ + ++e+g + ++++D+sH+n+ k+++rq +v+++++++i+ G   +aGvmiEs++++g++++ ++++l+yg+s+td c+++
    EHU01032.1 234 GGKQPNYHATDVAEATACLNEFGLApQLVIDFSHGNCLKQHRRQRDVAADVAEQIKGGsraVAGVMIESFIEEGNQKVVSGEPLTYGQSITDPCLNW 330
                   *********************98779*********************************************************************** PP

                   HHHHHHH CS
  DAHP_synth_1 268 eltelll 274
                   +++e++l
    EHU01032.1 331 QDSEAVL 337
                   **99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2715.78
//
Query:       EHU01033.1  [L=275]
Description: ATP/GTP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-72  243.3   0.0    3.8e-72  243.1   0.0    1.0  1  Kinase-PPPase  Kinase/pyrophosphorylase


Domain annotation for each model (and alignments):
>> Kinase-PPPase  Kinase/pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.1   0.0   2.1e-76   3.8e-72       1     255 []       7     265 ..       7     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 243.1 bits;  conditional E-value: 2.1e-76
  Kinase-PPPase   1 ifvvSdstGetaeavaraalaqFeevevelevlpfvkteekleevleeake.ee.....aivvyTlvdeelrealeeaaeekgveavdllgpllea 90 
                    +f++Sd+t++tae +++a+l+qF+ v+++  +lpfv++ +++++v +++++  +     ++v++++v++e+r+++  +++     + d+++ l+++
     EHU01033.1   7 VFYISDGTAITAEVLGHAVLSQFP-VNTNSVTLPFVENVQRAQAVKAQINAlFQqsgvrPLVFFSIVTPEVRDII-LQSDG---FCQDIVQALVAP 97 
                    89*********************9.*********************9996643358999****************.55555...8*********** PP

  Kinase-PPPase  91 leeelgvkpkeepgllhkl....dedYfkrieAieFalkhDDGkkprklkeADivLvGvSRtsKTPlSlyLaq.kglkvaNvPLvpe....lelpk 177
                    l++elg +p + ++++h l      +Y +ri+Ai+++l+hDDG + r+l++A+++L+GvSR++KTP+SlyLa+ +g+++aN+P++ +    l+lp 
     EHU01033.1  98 LQQELGLAPAPVAHRTHGLdasnLGKYDARIAAIDYTLAHDDGISLRGLEDAQVILLGVSRCGKTPTSLYLAMqFGIRAANYPFIADdmdnLKLPP 193
                    ****************9994433358***********************************************9************77888***** PP

  Kinase-PPPase 178 elfevdkkkvfgLtidperLveiRkeRlkslglksesYadlerveeeleeaeklfrklgipvidvtnksiEetAaeil 255
                    +l + +++k+fgLtidperL++iR+eR +    ++ +Ya+l++++ e+ e+e+lfr+++i+++++tn s+Ee+A++il
     EHU01033.1 194 AL-RQHQHKLFGLTIDPERLAAIRQERAE----NT-RYASLRQCRLEVGEVEALFRTHQIRYLNSTNYSVEEIATKIL 265
                    **.999***********************....55.9***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2264.02
//
Query:       EHU01034.1  [L=794]
Description: phosphoenolpyruvate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-118  395.4   0.7     3e-118  394.9   0.7    1.2  1  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    1.1e-59  202.0   0.0    2.1e-59  201.1   0.0    1.4  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
      1e-27   95.6   0.6    2.5e-27   94.4   0.6    1.7  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
      0.024   13.8   0.0       0.07   12.3   0.0    1.7  1  Polysacc_deac_2  Divergent polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.9   0.7  6.6e-122    3e-118       2     319 ..      22     348 ..      21     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 394.9 bits;  conditional E-value: 6.6e-122
      PPDK_N   2 elvGGKganLael...lneagipvPpgfaitadafrefleengleekideelkeldvddvdelrkaskeirelilsaelPeeleeaikeayeelgkkfg 97 
                 + vGGK+a+L+e+   l+++g++vP+gfa+t+ af++fle++gl+++i ++++++++ddvd+l+ka+k+ir++++++++ +ele+ai +aye+l++  +
  EHU01034.1  22 DRVGGKNASLGEMitnLSSLGVSVPNGFATTSWAFNQFLEQSGLNQRIYALMDDTNIDDVDQLAKAGKQIRQWVVETPFQPELEAAILSAYEQLSA--D 118
                 67***********99988899*************************************************************************86..7 PP

      PPDK_N  98 deelpvaVRSSataEDlpkasfaGqqdtyLnvggeeevleaikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlgasGVafsldpetGfkd 196
                 d+e ++aVRSSataED+p+asfaGqq+t+Lnv+g e+v+ a+k+v+aSlfn+rAi+Yr ++g+dh  val++++q+mv+sdl+asGV+f++d+e+Gf++
  EHU01034.1 119 DAEASFAVRSSATAEDMPDASFAGQQETFLNVQGIEAVMVAVKHVYASLFNDRAISYRVHQGYDHRGVALSAGIQRMVRSDLAASGVMFTIDTESGFDQ 217
                 7789*********************************************************************************************** PP

      PPDK_N 197 evlinasyGlGeaVVaGrvtpdefvvekstrk.....ilekkigekeikivydekeeg...tkevevpeeereklaLsdeeveeLaeiakkiekhygtp 287
                 +v+i+a+ GlGe VV+G+v+pdef+v+k+t       i+++++g+k++++vy ++ e+   ++ ++vpe er++++L+d+ev++La+ a  ie+hy++p
  EHU01034.1 218 VVFITAALGLGEMVVQGAVNPDEFYVHKPTLAakrpaIVRRNMGSKKVRMVYADSREHgeqVRIEDVPETERDRFCLNDSEVQALAQQAVLIEQHYKRP 316
                 ******************************9999******************98887767789999********************************* PP

      PPDK_N 288 mdiEfaideeegklyllQaRpetrtsekkekk 319
                 mdiE+a+d+++gkl+++QaRpet++s+ ++ +
  EHU01034.1 317 MDIEWAKDGHTGKLFIVQARPETVRSNGQVME 348
                 ************************99877655 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.0   4.6e-63   2.1e-59      19     290 ..     483     788 ..     470     792 .. 0.89

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 4.6e-63
                      BCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTS..CCHHHHHH.............................HHHHHHHHHHHTTTSEEE CS
  PEP-utilizers_C  19 kikvlaNidtpedaekalengaeGiGLlRtEflfmar..eelpteee.............................qaeaykkvleamngrpvv 81 
                       +kv++N+++p+ a   +  + eG+GL R Ef+++ +   +++++ e                             ++e ++++ +a+ ++ v+
       EHU01034.1 483 PLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMigVHPKALLEfdqqppalqqhirqlmkgfddpvefyiarLTEGIATLGAAFAPKRVI 576
                      589*******************************9985333666667889******************************************** PP

                      EEXXXSSCCGGSGGC...HHHH.XSXGGGSSXTHHHHCCS..HHHHHHHHHHHHHHCCCC...EEEEEESSXXSHHHHHHHHHHHHHHHHHHHH CS
  PEP-utilizers_C  82 vRtlDiggdkelpel...keepeevNPmlGfRgirlglse..pelfetqlrAllrasaag...kleimlPmvasveeleeakkiieevkeelek 167
                      vR+ D+++++  + +    +epee+NPmlGfRg  +++se  ++ f  +  A++r++  +   ++eim+P+v++v++   a++++ee  ++  k
       EHU01034.1 577 VRLSDFKTNEYANLVggeRYEPEEENPMLGFRGAGRYVSEsfRDCFALECEAVKRVRNDMgltNVEIMVPFVRTVDQ---AQAVVEELGRQGLK 667
                      *********654443446799***************9999899***************54456**********9875...66777777555444 PP

                      CTCTXXTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCS. CS
  PEP-utilizers_C 168 egvkkkkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagd. 260
                      +    ++++kv +M E+ps alla++++++ d+fSiG+ND+tQ++l++dRd+  v+ l+d+ + av++l+++ ikaa+++g+ vgiCG+ ++d 
       EHU01034.1 668 R---GENGLKVIMMCEIPSNALLAEQFLQHFDGFSIGSNDMTQLALGLDRDSGVVSALFDERNEAVKALLSMAIKAAKKQGKYVGICGQGPSDh 758
                      4...4789************************************************************************************62 PP

                      CCCHHHHHHCTXSEEEEXGGGHHHHHHHHH CS
  PEP-utilizers_C 261 psavellvglGldelSmsaasvpaaraala 290
                      +  +++l++ G+d+lS++++ v  +   la
       EHU01034.1 759 QDFAAWLMEQGIDSLSLNPDTVVETWLSLA 788
                      67899*****************98766655 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.6   5.6e-31   2.5e-27       2      73 .]     386     457 ..     385     457 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 5.6e-31
                    --S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   2 leegvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +e+g++Lv+++t+p++ + ++ka++ivt+rGG+t+HaAi+ArelgiPaVvg+g+at++lkeg ++tv +++G
     EHU01034.1 386 IEKGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERLKEGHTVTVSCAEG 457
                    789******************************************************************998 PP

>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05      0.07     130     197 ..     701     766 ..     682     776 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                      TT-SHHHHHHHCT--EEE-SEETTSS-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHH CS
  Polysacc_deac_2 130 aksvaakvakelgvpvaerdvfLDnetdeaairkqlkklaklakkkGsaiaighprpetieaLkewlp 197
                        + + ++a  l   ++  +   D+++  +a+++ l  ++k akk+G+ ++i+  +p   +  ++wl 
       EHU01034.1 701 GSNDMTQLALGLDRDSGVVSALFDERN--EAVKALLSMAIKAAKKQGKYVGICGQGPSDHQDFAAWLM 766
                      555566777777777777788888877..9**************************999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5602.39
//
Query:       EHU01035.1  [L=364]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-51  173.4  41.8    7.7e-51  173.2  41.8    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2  41.8   4.3e-55   7.7e-51       2     326 ..      15     343 ..      14     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 4.3e-55
  AI-2E_transport   2 llilvllllllalypfiselllplliAlvlayllnpvvkfL.kkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslp.ayidsl 93 
                      ++++++lll++a+++++++++l +++A +++++++p++ ++ +    +r+lav+++++lll+l++++v+llv++li+ ++ ++      +    
       EHU01035.1  15 FTLIFILLLIAACLWVVQPFILGFAWASMVVIATWPLMLRIqRLLWGRRSLAVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWATqGHMLPT 108
                      67899************************************66778899****************************99999985543899999 PP

  AI-2E_transport  94 qnilnelpslleele.n...liqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkai 183
                      +++ln++p   e+l+ +   l++  + ++ + l+ +++ ++ +++  +++ ++++++l+++ll++++l+++ge+   gi++++ +   +r +a+
       EHU01035.1 109 LSWLNDIPVVGEKLYaSyqkLVAGGGAAIMAKLQPYVGRTTGFFVAQAGHFGRFMIHLAVMLLFSVLLYWRGEQAALGIRHFAVRMAGRRGDAA 202
                      **************97777777777888888888888888****************************************************** PP

  AI-2E_transport 184 lrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegnil 277
                      +  + +++++++ g+v++al++gvl++igl+i g+pya+ll++l++l + +  iG+++vl+p+++++++ g+ +++ +vl+v+  v+ + +nil
       EHU01035.1 203 VLLAGQAVRAVALGVVVTALVQGVLGGIGLAISGIPYATLLTVLMILCC-LVQIGPLLVLVPAIVYLYWSGD-TTWGTVLLVWSCVVGTLDNIL 294
                      *************************************************.67********************.********************* PP

  AI-2E_transport 278 ePklmgkrlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      +P l++++++l+ ++il  +++g+  fG++Gl+++++++av  +++ ++
       EHU01035.1 295 RPVLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVW 343
                      *****************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2900.47
//
Query:       EHU01036.1  [L=1017]
Description: putative FAD-linked oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-66  224.3   0.0    2.6e-66  223.8   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    1.4e-35  122.0   0.1    2.5e-35  121.2   0.1    1.4  1  FAD_binding_4  FAD binding domain
    8.6e-13   48.5   0.6    2.1e-12   47.3   0.6    1.7  1  Fer4_8         4Fe-4S dicluster domain
    0.00051   20.5   3.8      0.012   16.1   3.8    2.6  1  Fer4_17        4Fe-4S dicluster domain
    0.00094   19.2   0.0     0.0024   18.0   0.0    1.6  1  BBE            Berberine and berberine like
     0.0094   15.7   0.2      0.019   14.7   0.2    1.4  1  Fer4_20        Dihydroprymidine dehydrogenase domain II, 4Fe-
  ------ inclusion threshold ------
      0.014   15.5   1.4      0.037   14.1   1.4    1.7  1  Fer4_10        4Fe-4S dicluster domain
       0.03   14.5   0.2       0.11   12.7   0.0    1.9  2  Fer4_18        4Fe-4S dicluster domain
      0.039   14.5   0.0       0.18   12.4   0.0    2.2  1  PrmC_N         PrmC N-terminal domain
       0.55   10.9   4.8        1.7    9.3   4.8    1.9  1  Fer4_7         4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.8   0.0   1.5e-69   2.6e-66       1     250 []     281     539 ..     281     539 .. 0.98

  Alignments for each domain:
  == domain 1  score: 223.8 bits;  conditional E-value: 1.5e-69
                    --SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SS.......TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT CS
  FAD-oxidase_C   1 lpearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgak.......kglpdeeealllvefegddeeeaeeelealveaile 89 
                    lp++r+v++++++sf++a++ ++ ++qa  + +++e++d+k l+l+++++ ++       + +++ +  l++vef+gdde+++e++l+ ++++ l+
     EHU01036.1 281 LPKVRRVVNIKYDSFDSALRNAPLMVQA--QALSVETVDSKVLNLAREDIVWHsvkalitDVPDKTMSGLNIVEFAGDDEAKIEQQLT-QLCSRLD 373
                    599*************************..**********************************************************.******* PP

                    -EEEEE................ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEE CS
  FAD-oxidase_C  90 atgaad......vlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdl 179
                    a +a++       + ++d +++e+++++Rk+a+ +l +a+++a++++++eDt+vP+++lad++ +++alld++gl++ +fgH++ g+lh+++++d+
     EHU01036.1 374 ALIAQQeggvigYQRCNDLDSIERIYNMRKKAVGLLGNAKGRAKPIPFVEDTAVPPEHLADYIVEFRALLDSHGLSYGMFGHVDAGVLHVRPALDM 469
                    ******9997644*********************************************************************************** PP

                    E..--TT--THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 180 adeaeeeraeklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +d+ +e  +++++devv+l++++gG ++gEHG G++ + y + ++g+++++ +rriKaa+DP++ LNPgk+
     EHU01036.1 470 CDPHQEMMMKQISDEVVELTARYGGLLWGEHGKGFRAQ-YSPAFFGDTLFNELRRIKAAFDPDNRLNPGKI 539
                    ***********************************987.******************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.1   1.4e-38   2.5e-35       1     138 [.      52     192 ..      52     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 1.4e-38
                    EEEEEEESSHHHHHHHHHHHHHC...TSCEEEESSSTTEESTTCSCCEEEEEETT.S--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGG CS
  FAD_binding_4   1 paavvrpeseeevaaalrlanea...glpvlvrGgGssllgqavatggvvldlsr.lnrileideeegtatveaGvtlgdlvealaakglllglep 92 
                    p+av++p+s+++va + r+a +    +l +++rGgG++++gq++ ++g+++d+sr +nrile++ e+g+++veaGv+ ++l+++l++ g+++ +e 
     EHU01036.1  52 PDAVLFPRSTADVALIARVAGDPafsSLVFTPRGGGTGTNGQSL-NQGIIVDMSRyMNRILEVNTEQGWVRVEAGVVKDQLNAYLKPFGYFFSPEL 146
                    89******************998777999**************8.*************************************************** PP

                    GTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  93 gsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ++ +++t+GG+i t a+G+gs +yG+++d+vlgl++vl  G ++++
     EHU01036.1 147 STSNRATLGGMINTDASGQGSLVYGKTSDHVLGLRAVLLGGDILDT 192
                    *****************************************99986 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.6   1.2e-15   2.1e-12       3      65 .]     576     687 ..     574     687 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.2e-15
      Fer4_8   3 ekCieCgaCq......saCpvlrrtkkhlldargeaaedvqeeqvlee............................................eealwsC 51 
                 ++C+++g+C+       +Cp+++ t++++++++g+a+   +e+ +l +                                            ++a+  C
  EHU01036.1 576 MECNGNGLCFnfdvrsPMCPSMKITRNRIHSPKGRATL-TREWLRLLAeqgvdpvmlekklpektlslrglvgrmrntwyankgeydfshevKDAMSGC 673
                 78**********999999********************.888888777888889999999999999999999999999999999*************** PP

      Fer4_8  52 ttcgaCtevCpvgi 65 
                 ++c+aC+++Cp++i
  EHU01036.1 674 LACKACSTQCPIKI 687
                 ***********997 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   3.8   6.8e-06     0.012       2      61 .]     578     688 ..     577     688 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.8e-06
     Fer4_17   2 CiqCgyClp......eCpsyeaydnepkkllraakl..........................................glleeaeke.........eka 43 
                 C++ g C +      +Cps+++++n+ +++  +a+l                                          ++                +++
  EHU01036.1 578 CNGNGLCFNfdvrspMCPSMKITRNRIHSPKGRATLtrewlrllaeqgvdpvmlekklpektlslrglvgrmrntwyaNK------GeydfshevkDAM 670
                 88888888888888899999998887666666665555556677777777777777777777666655544433333333......03444445547** PP

     Fer4_17  44 slCieCgeCerkCPqgld 61 
                 s C+ C+ C+++CP ++d
  EHU01036.1 671 SGCLACKACSTQCPIKID 688
                 **************8876 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0024      13      37 ..     507     532 ..     473     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                 HHHHHHHGGG.HHHHHHHHHHH-TT- CS
         BBE  13 ewgerYFggN.ferLvkvKtkyDPdN 37 
                 ++  ++Fg+  f+ L+++K+++DPdN
  EHU01036.1 507 QYSPAFFGDTlFNELRRIKAAFDPDN 532
                 78899***888**************9 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   1.1e-05     0.019      13      45 ..     661     692 ..     649     700 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                 -HHHHHHHH.TT----TT-HHHHCSTT---HHHH CS
     Fer4_20  13 teeealeeA.sRClqCkkapcvkgCPveidipef 45 
                 + ++ +++A s Cl C  + c+++CP++id+p f
  EHU01036.1 661 DFSHEVKDAmSGCLAC--KACSTQCPIKIDVPAF 692
                 444444444278****..78************99 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   2.1e-05     0.037      23      56 .]     598     684 ..     574     684 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
     Fer4_10  23 l.....................................................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                                                                       t + +kge++ + +v+++++ C +c aC  +CP
  EHU01036.1 598 KitrnrihspkgratltrewlrllaeqgvdpvmlekklpektlslrglvgrmrnTWYANKGEYDFSHEVKDAMSGCLACKACSTQCP 684
                 35555555555555555555555555555555556666666666666666666677889999999999******************9 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.4   9.7e+03      10      32 ..     541     563 ..     538     584 .. 0.75
   2 ?   12.7   0.0     6e-05      0.11      52      77 ..     664     689 ..     638     694 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.4
     Fer4_18  10 cPyarvqsvlydeetllvvydak 32 
                  Py    ++++ ++t+  +yd +
  EHU01036.1 541 TPYNSDAAMMQVDATKRGSYDRQ 563
                 48888888888888888888865 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6e-05
     Fer4_18  52 erkekgagdcidcescvkvcPtgidi 77 
                 ++ +++++ c++c++c + cP++id+
  EHU01036.1 664 HEVKDAMSGCLACKACSTQCPIKIDV 689
                 445678899****************8 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001      0.18       3      33 ..     893     923 ..     892     944 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
      PrmC_N   3 LreaearLkaagieeaeldAelLlahvlgls 33 
                  ++ +++ +++ ++ a+ +A++L+ah+++++
  EHU01036.1 893 HEWLQNAVQERDVQIASGEAWYLFAHCTEVT 923
                 57999999*******************9986 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.8   0.00093       1.7      29      50 ..     664     685 ..     577     687 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00093
      Fer4_7  29 ekveidpekClgCgaCvavCPt 50 
                 ++v+  ++ Cl C+aC + CP 
  EHU01036.1 664 HEVKDAMSGCLACKACSTQCPI 685
                 444555889************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1017 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.41
# Mc/sec: 7407.65
//
Query:       EHU01037.1  [L=134]
Description: hypothetical protein CKS_3411 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.22   10.9   0.0    1.1  1  Tropomyosin  Tropomyosin


Domain annotation for each model (and alignments):
>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.2e-05      0.22     169     211 ..      11      53 ..       2      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.2e-05
  Tropomyosin 169 eredeyeeeirtLeekLkeaeeRaeeAErsvqkLekevdrled 211
                  ++ dey+  +r+L+     a++R + AE +vq+L + +d+  d
   EHU01037.1  11 HKLDEYRFSVRDLTVDFYLAQARLDRAECTVQQLRQFNDTCLD 53 
                  6889********************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1147.95
//
Query:       EHU01038.1  [L=124]
Description: Fe-S cluster assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-18   66.4   0.0    2.7e-18   66.2   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.5e-22   2.7e-18       3     111 .]      19     119 ..      17     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.5e-22
                  EEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  +tlte+Aa+++ +l ae+++   lrL++++ g       C+ g+ y ++lv+++ e++d +++  g +++v  ++++f+ +g+++d+v +  +  +k+
   EHU01038.1  19 LTLTETAAKQILNLAAENPEVkgLRLAIKQSG-------CA-GFGYVMDLVKQP-EDDDLQFTYYGATLFVPLQAMPFI-DGTEVDYVREGLNQIFKF 106
                  8****************988789*********.......**.************.************************.9***************** PP

                  ETCCEEEEEEEEE CS
  Fe-S_biosyn  99 dngilddnvglgk 111
                  +n+ ++ ++g+g+
   EHU01038.1 107 NNPKAQHACGCGE 119
                  ***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 1189.88
//
Query:       EHU01039.1  [L=497]
Description: component of SufBCD complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-68  229.7   0.0    4.1e-68  229.3   0.0    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   0.0   2.3e-72   4.1e-68       2     218 .]     236     468 ..     235     468 .. 0.97

  Alignments for each domain:
  == domain 1  score: 229.3 bits;  conditional E-value: 2.3e-72
     UPF0051   2 qfertlivveegaevtiieeyagc............gvveifvgenAklkyvkvqnw......sedavnlstkra.eegrdaklelttvslggkltrke 81 
                 qfert+++++e++ v++i   +gc            +vve+++++nA++ky++vqnw      +++++n++tkra  eg ++k+++t+ ++g+++t+k+
  EHU01039.1 236 QFERTILIADEDSYVSYI---EGCsapvrdsyqlhaAVVEVIIHKNAEVKYSTVQNWfpggegEGGILNFVTKRAlCEGDRSKMSWTQSETGSAITWKY 331
                 89****************...677777777777777**************************777**********77788******************* PP

     UPF0051  82 psvelkgegaeaelnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidadd 180
                 ps+ l+g+++ +e+++++l++g+q++dt+tk++h g+nt+s+i+skg++++++++++rg +k+ + a++++++++++++l+++++ a+t+P++e +++ 
  EHU01039.1 332 PSCILRGDHSVGEFYSVALTSGRQQADTGTKMIHIGKNTRSTIISKGISAGKSQNTYRGLVKIMPTATNARNFTQCDSMLIGPDCGAHTFPYVETRNNT 430
                 *************************************************************************************************** PP

     UPF0051 181 vkasHgAtvGkideeqlfYLmsRGlseeeArrlivrgf 218
                 ++++H+At+++i e+q+fY+ +RG+see+A ++iv+gf
  EHU01039.1 431 AQLEHEATTSRIGEDQMFYCLQRGISEEDAISMIVNGF 468
                 *************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.34
# Mc/sec: 4343.93
//
Query:       EHU01040.1  [L=248]
Description: transport protein associated with Fe-S cluster assembly [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-21   77.6   0.0    1.6e-21   77.2   0.0    1.1  1  ABC_tran        ABC transporter
    1.8e-08   34.1   1.3    5.1e-06   26.1   1.3    2.2  1  SMC_N           RecF/RecN/SMC N terminal domain
    4.1e-07   30.1   0.1    0.00084   19.2   0.1    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00029   20.5   0.0    0.00055   19.6   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0016   18.4   0.1     0.0025   17.7   0.1    1.3  1  RsgA_GTPase     RsgA GTPase
     0.0025   16.6   0.0     0.0051   15.5   0.0    1.5  2  AAA_13          AAA domain
     0.0058   16.6   0.0        2.4    8.1   0.0    2.3  2  AAA_5           AAA domain (dynein-related subfamily)
     0.0069   16.9   0.1      0.029   14.9   0.0    1.9  2  AAA_23          AAA domain
  ------ inclusion threshold ------
      0.016   15.4   0.0       0.02   15.1   0.0    1.5  1  AAA_33          AAA domain
      0.044   13.5   0.1        0.1   12.3   0.1    1.5  1  Cytidylate_kin  Cytidylate kinase
      0.049   13.2   0.0      0.087   12.4   0.0    1.3  1  AAA_27          AAA domain
       0.05   13.2   0.1       0.15   11.6   0.0    1.7  2  AAA_25          AAA domain
      0.063   13.5   0.2       0.15   12.3   0.1    1.7  2  AAA_28          AAA domain
      0.075   13.6   0.0       0.16   12.5   0.0    1.6  1  AAA_18          AAA domain
      0.077   13.3   1.2       0.41   10.9   1.2    2.2  1  AAA_22          AAA domain
       0.12   12.7   0.0       0.96    9.8   0.0    2.1  2  Invasin_D3      Invasin, domain 3
       0.15   11.8   0.0       0.48   10.1   0.0    1.8  2  VirE            Virulence-associated protein E
       0.18   11.3   0.0        0.8    9.2   0.0    1.8  2  Ploopntkinase1  P-loop Nucleotide Kinase1


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   1.7e-24   1.6e-21       1     135 [.      17     172 ..      17     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.7e-24
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren............esdee 84 
                 l+ ++l++k+ge++ai+G+nG+GKStL ++lag ++   t G+++++gkdl e +++e++ + i + +q p   p+++++              +   +
  EHU01040.1  17 LRGLNLEIKPGEVHAIMGPNGSGKSTLSATLAGREDYeiTGGSVTFKGKDLLElEPEERAGEGIFMAFQYPVEIPGVSNQFFlqtsvnavrkyrQ---Q 112
                 5789*****************************9998889*************9****************9999999665559899999886531...2 PP

                 ........HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 ........xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ........iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEp 135
                          + + +k++l +++++ +++s    +SgG+k+r  + ++ + +p+l +lDE 
  EHU01040.1 113 deldrfdfQDFIEEKINLLKMPEDLLTRSVnVGFSGGEKKRNDILQMAALEPDLCILDET 172
                 346677766666677777778888887777799**************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.3   5.1e-09   5.1e-06      25     203 ..      28     209 ..      17     226 .. 0.60

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.1e-09
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCH....CCCCCC--BTTCSSTTEEEEEEEEEETTEE....SSSSSSCEEEEEEEETTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrse....klsdlihkskekasvkkaeveitfdnedkk....lkiekeevsisrrvkrkgeseyking 115
                 ++ ai+GpNGSGKs l   +    G +++ ++       k +dl+   + ++++ ++ + + f+ + +      +   +  +  +r++r+++   +++ 
  EHU01040.1  28 EVHAIMGPNGSGKSTLSATL---AGREDY-EITGGsvtfKGKDLLEL-EPEERAGEG-IFMAFQYPVEIpgvsNQFFLQTSVNAVRKYRQQDELDRFDF 120
                 4789************9999...454444.44333111133566665.333333333.33334333333211122222222333444555554555555 PP

                 EEE-HHHHHHH.HHCTT-STT...CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCC CS
                 xxxxxxxxxxx.xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsel.lesagiske...lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemle 203
                 ++  +++++ l +++  ++++    +SgGek+   +   + + + +p  l++lDe d+ LD    k+va+ +++ +++   fi++++ +++l 
  EHU01040.1 121 QDFIEEKINLLkMPEDLLTRSvnvGFSGGEKKRNDI---LQMAALEPD-LCILDETDSGLDIDALKIVANGVNSLRDEkRAFIIVTHYQRILD 209
                 55555555544233333443333359******8876...333444554.9***********************88776488999**9998876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   8.5e-07   0.00084       2     116 ..      30     128 ..      29     144 .. 0.74
   2 !    9.2   0.0   0.00098      0.98     254     303 .]     161     209 ..     146     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.5e-07
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesglll 100
                  ++ GpNgsGKS+L  +l +  r d +++g+  ++ g+  +   p +  +  + ++f++ +e   + gv  +++l+   ++v           +++  +
  EHU01040.1  30 HAIMGPNGSGKSTLSATLAG--REDYEITGGSVTFKGKDLLELEPEERAGEGIFMAFQYPVE---IPGVSNQFFLQTSVNAV-----------RKYRQQ 112
                 5799**************54..3377777777777777777777777666666666666666...99999999999999999...........666666 PP

      AAA_21 101 dkrsleeedvfnpear 116
                 d+++++++ +f+ e+ 
  EHU01040.1 113 DELDRFDFQDFIEEKI 128
                 6666666666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00098
      AAA_21 254 alkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 al+ ++l ++DE ++gL+  +l+ ++  +++l++++  +i++TH   +ld
  EHU01040.1 161 ALE-PDLCILDETDSGLDIDALKIVANGVNSLRDEKRAFIIVTHYQRILD 209
                 344.49********************99999999999*******887775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.5e-07   0.00055      15      38 ..      20      43 ..       8      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.5e-07
      AAA_29 15 htieidlkgatlltGpsGsGKSTl 38
                  +ei++ +++ ++Gp+GsGKSTl
  EHU01040.1 20 LNLEIKPGEVHAIMGPNGSGKSTL 43
                568999999**************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.5e-06    0.0025      80     128 ..       7      56 ..       2      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.5e-06
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  l vs+++k+ l+ l+ ++k  ++ +++G+ G GKStL  +l+++++ ++ 
   EHU01040.1   7 LQVSVEDKAILRGLNLEIKPgEVHAIMGPNGSGKSTLSATLAGREDYEIT 56 
                  678999999999999999988**********************9887765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.1e-06    0.0051      18      76 ..      29     129 ..      21     142 .. 0.67
   2 ?   -2.5   0.0       1.5   1.5e+03     537     578 ..     174     212 ..     162     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.1e-06
      AAA_13  18 iNliYGwNGaGKTtLSrllrslelgetepkfangsi...............................................eitngeeldirVfNrd 69 
                 +  i G NG+GK+tLS  l+  e  e     + gs+                                               ++ +++eld + f +d
  EHU01040.1  29 VHAIMGPNGSGKSTLSATLAGREDYE----ITGGSVtfkgkdllelepeeragegifmafqypveipgvsnqfflqtsvnavrKYRQQDELDRFDF-QD 122
                 55699***************987655....455555335566666666666666666666666666666666666555555555555557777777.77 PP

      AAA_13  70 Fveenls 76 
                 F+ee+++
  EHU01040.1 123 FIEEKIN 129
                 7777665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
      AAA_13 537 SSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevk 578
                 S LD ++l iv++ ++s     ++ + ++i TH    + ++k
  EHU01040.1 174 SGLDIDALKIVANGVNSLR---DEKRAFIIVTHYQRILDYIK 212
                 7789999999999999986...78888999999877777766 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0092       9.1       4      21 ..      32      49 ..      31      56 .. 0.87
   2 !    8.1   0.0    0.0025       2.4      35      76 ..     132     174 ..     120     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0092
                EE--SSSSHHHHHHHGGG CS
       AAA_5  4 LvGppGtgKselaerlaa 21
                + Gp G+gKs+l+  la 
  EHU01040.1 32 IMGPNGSGKSTLSATLAG 49
                57***********99985 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0025
                 T--HHHHH--B--..........--------G-SEEEEESGGG CS
       AAA_5  35 dtteedlkgrreik.ngttslvdsplvraaregeilvlDEver 76 
                 +++e+ l+ ++++  +g+++ ++ +l  aa e+++++lDE + 
  EHU01040.1 132 KMPEDLLTRSVNVGfSGGEKKRNDILQMAALEPDLCILDETDS 174
                 6899999********9999999999999************874 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-05     0.029      13      35 ..      20      43 ..       9      48 .. 0.78
   2 ?   -0.3   0.0       1.3   1.3e+03     160     178 ..     111     130 ..      58     196 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-05
      AAA_23 13 qeidFsk.gltlItGpNGaGKTTi 35
                 +++ ++  + +I GpNG+GK+T+
  EHU01040.1 20 LNLEIKPgEVHAIMGPNGSGKSTL 43
                555555524789***********8 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.3
      AAA_23 160 keleele.dekkllekleqe 178
                 ++ e    d+++++e+++++
  EHU01040.1 111 QQDELDRfDFQDFIEEKINL 130
                 22222111233333333222 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     2e-05      0.02       3      27 ..      31      55 ..      29     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
      AAA_33  3 llvGlpGsGKstlaerllkklgavl 27
                 + G++GsGKstl+  l+ ++++++
  EHU01040.1 31 AIMGPNGSGKSTLSATLAGREDYEI 55
                678***************9988875 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1    0.0001       0.1       2      26 ..      31      55 ..      30      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
                    EEE-STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklglky 26
                    ai GP gsGKs+++ +la + ++++
      EHU01040.1 31 AIMGPNGSGKSTLSATLAGREDYEI 55
                    799***************9988876 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.7e-05     0.087      19      45 ..      20      46 ..      16      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.7e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrA 45
                l+++ +  ++h i+GpN +GKst+ + 
  EHU01040.1 20 LNLEIKPGEVHAIMGPNGSGKSTLSAT 46
                667777899**************8765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.15      31      54 ..      25      48 ..      16      70 .. 0.91
   2 ?   -1.9   0.0         2     2e+03     165     187 ..     181     203 ..     158     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      AAA_25 31 pagelallaGapgtGKttlaldla 54
                  ge+++++G+ g+GK+tl   la
  EHU01040.1 25 KPGEVHAIMGPNGSGKSTLSATLA 48
                569****************98887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
      AAA_25 165 vgalvealeriarrtgaavllvh 187
                  + + + +++++++++a ++++h
  EHU01040.1 181 LKIVANGVNSLRDEKRAFIIVTH 203
                 37788888889999988888887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00015      0.15       3      25 ..      31      54 ..      29      63 .. 0.84
   2 ?   -3.4   0.0       9.9   9.8e+03      15      27 ..     232     244 ..     231     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
      AAA_28  3 vitGgestGKTtlleaLaar.gyp 25
                +i+G+ ++GK+tl++ La r +y+
  EHU01040.1 31 AIMGPNGSGKSTLSATLAGReDYE 54
                89****************764555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.9
      AAA_28  15 lleaLaargypvv 27 
                 l+++L+++gy ++
  EHU01040.1 232 LVKQLEEQGYGWL 244
                 8999999999887 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00016      0.16       3      34 ..      32      63 ..      31      85 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvake 34
                ++G+ G+GK+tl+  L+ r+ + +  ++v ++
  EHU01040.1 32 IMGPNGSGKSTLSATLAGREDYEITGGSVTFK 63
                89**************9998774444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.2   0.00041      0.41       8      30 ..      30      52 ..      24     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                 +++G+ G+GK+tl ++l+ + d
  EHU01040.1 30 HAIMGPNGSGKSTLSATLAGRED 52
                589*************9998865 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00096      0.96      17      61 ..      36      80 ..      22      84 .. 0.82
   2 ?    0.4   0.0      0.82   8.2e+02       2      20 ..     171     189 ..     170     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00096
  Invasin_D3 17 dGkststltvtlkDangnpvsgltvtfsttsagtlsavtdngdGt 61
                +G+ +stl++tl   ++  ++g +vtf+ ++   l+  +  g+G+
  EHU01040.1 36 NGSGKSTLSATLAGREDYEITGGSVTFKGKDLLELEPEERAGEGI 80
                9***************************87444666666666665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.82
  Invasin_D3   2 pakStftaspasivAdGks 20 
                 ++ S + ++  +ivA+G++
  EHU01040.1 171 ETDSGLDIDALKIVANGVN 189
                 67899999999******86 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00048      0.48      41      91 ..      16      69 ..      10     112 .. 0.87
   2 ?   -1.2   0.0       1.4   1.4e+03      49      79 ..     211     246 ..     194     247 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00048
        VirE 41 varvlePgiKfDfvlvLvGkqgsgKstflekl.geewf..tdslksvedkdave 91
                + r l+  iK  +v  + G+ gsgKst+ ++l g e +  t  + ++++kd +e
  EHU01040.1 16 ILRGLNLEIKPGEVHAIMGPNGSGKSTLSATLaGREDYeiTGGSVTFKGKDLLE 69
                5677778899999*******************8887553378888999999875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
        VirE  49 iKfDfvlvLv.Gkq.gsgKstfleklgee...wftd 79 
                 iK Dfv vL+ Gk  +sg  +++++l e+   w td
  EHU01040.1 211 IKPDFVHVLYqGKIvKSGDFSLVKQLEEQgygWLTD 246
                 799999999614423566667777774332347666 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0008       0.8      17      42 ..      27      52 ..      20      73 .. 0.75
   2 ?   -0.7   0.0      0.87   8.7e+02      75     102 ..     186     214 ..     181     236 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0008
  Ploopntkinase1 17 gelyyvkgsngsgkstvpsylaekdp 42
                    ge++ + g ngsgkst+ + la ++ 
      EHU01040.1 27 GEVHAIMGPNGSGKSTLSATLAGRED 52
                    999***************99997754 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.87
  Ploopntkinase1  75 kgvdslkdteelklalslser.eeyikyd 102
                      gv+sl+d ++  + ++  +r  +yik d
      EHU01040.1 186 NGVNSLRDEKRAFIIVTHYQRiLDYIKPD 214
                     57777777665544443332213555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1747.64
//
Query:       EHU01041.1  [L=425]
Description: component of SufBCD complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-71  241.0   5.7    1.5e-71  240.6   5.7    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   5.7   8.1e-76   1.5e-71       3     218 .]     172     395 ..     170     395 .. 0.97

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 8.1e-76
     UPF0051   3 fertlivveegaevtiieey........agcgvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkgegaea 93 
                 + r+++ +ee ae+++ie+y        ++ g  ++ v++nA+lk++k+  +s ++++++++ +  +rda++++t++ lg++l+r+++s++l+ge++++
  EHU01041.1 172 HYRHHLQLEESAEAEVIEHYvtlndsahFTGGRFTFAVADNATLKHTKLAFESTKSYHFAHNDIVINRDAQVTSTSFLLGAGLSRHNTSTQLNGENTQL 270
                 5688999*************98887776666******************************************************************** PP

     UPF0051  94 elnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgAtvGki 192
                 +ln+l+l  +++ +dtrt ++hn+ ++ sr+ +k++++d++ravf+g+ikv+++a ktd++++n+nLll++ a++dt+P+lei+addvk+sHgAtvG+i
  EHU01041.1 271 SLNSLVLPVNQEVADTRTYLEHNKGHCLSRQMHKTIVRDKGRAVFNGHIKVAQHALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRI 369
                 *************************************************************************************************** PP

     UPF0051 193 deeqlfYLmsRGlseeeArrlivrgf 218
                 d+eq+fYL+sRG++++ A+ +i+++f
  EHU01041.1 370 DDEQMFYLRSRGIEQDAAQTMIIHAF 395
                 ************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3317.90
//
Query:       EHU01042.1  [L=407]
Description: selenocysteine lyase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-152  508.1   0.0   1.4e-152  507.9   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    0.00013   21.4   0.1    0.00023   20.5   0.1    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0007   18.2   0.1     0.0028   16.3   0.1    1.8  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0014   18.0   1.3     0.0021   17.4   1.3    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.047   12.7   0.1        0.1   11.5   0.0    1.6  2  SelA             L-seryl-tRNA selenium transferase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.9   0.0    4e-156  1.4e-152       2     371 .]      26     394 ..      25     394 .. 1.00

  Alignments for each domain:
  == domain 1  score: 507.9 bits;  conditional E-value: 4e-156
                  EEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTSH CS
  Aminotran_5   2 yldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteaeh 98 
                  yldsaA++q p +V++a +++y++ +a+vhr++h+l+++at+ +e++re+ a+++na+s+eei+f++Gtte+inlva+s+a s l+pgd+ ++t++eh
   EHU01042.1  26 YLDSAASAQRPLSVINAESHFYQHGYAAVHRGIHTLSQQATSDMENVREQAARFLNAASAEEIVFVKGTTEGINLVANSWAGSqLQPGDNLIITQMEH 123
                  9*********************************************************************************9*************** PP

                  GGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEE CS
  Aminotran_5  99 hanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfla 196
                  han+vpwq++a+r+ga+++v+pl+++gel ld+l+ l++ +t+l+a+thvsnv+Gt++pv++i+++a+++g+++l+D+aqav+h  +dv+++g+Df++
   EHU01042.1 124 HANIVPWQMVAERCGAEIRVLPLTDNGELALDQLAGLIDSRTRLLAVTHVSNVLGTVNPVKAIVAQARAAGVVTLIDGAQAVMHSAVDVQDIGCDFYV 221
                  ************************************************************************************************** PP

                  EETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 197 fsghKllgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                  fsghKl+gPtGiGvly+rk+ll  ++p+++gg+m+ ev l  +t +++ap++feaGTpn+ giiglgaaley+e++gl++i+++e+ l++y+l++l+s
   EHU01042.1 222 FSGHKLYGPTGIGVLYGRKALLDIMPPWEGGGSMIGEVLLpTGTNWNTAPWRFEAGTPNTGGIIGLGAALEYVEALGLDTIHQRETILMNYALDKLAS 319
                  ************************************************************************************************** PP

                  STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 294 lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  +p++++yg+   ++r+++++fn+ ++ha dv+++Ld++gIa+r+Ghhca+pl++++++++++RaS+ +yn+e+evdrl
   EHU01042.1 320 VPDIQIYGS---QQRTGVIAFNLGKHHAFDVGSFLDQYGIAIRTGHHCAMPLLRHYQVPAMCRASFTFYNSEDEVDRL 394
                  ********7...9***************************************************************98 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   6.5e-08   0.00023      39     215 ..      77     243 ..      56     357 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.5e-08
                      HHHHHHTT-SEEEEES-HHHHHHHHH....HHH--TTEEEEEETT.-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-E CS
  Beta_elim_lyase  39 davaelfgkeaalfvpqGtaAnsill....killqrgeevivtep.ahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheek 127
                      +++ +++ +e ++fv   t + ++         lq+g++ i+t+   h      + +ae  g++ r l+  ++G++ l++l+ +i+       +
       EHU01042.1  77 ARFLNAASAEEIVFVKGTTEGINLVAnswaGSQLQPGDNLIITQMeHHANIVPWQMVAERCGAEIRVLPLTDNGELALDQLAGLIDS------R 164
                      4445566667777766555543333334445556799998888874444555558888999999999999999**************......5 PP

                      EEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-.EEEEE-HH.. CS
  Beta_elim_lyase 128 iklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvG.gvlafrddel 215
                      ++l+ +t   n+  G+v +   ++++ a a++ g+  ++DgA    a+ +++++v+++  ++D  ++s+ K    + G gvl +r++ l
       EHU01042.1 165 TRLLAVTHVSNV-LGTVNP---VKAIVAQARAAGVVTLIDGA---QAVMHSAVDVQDI--GCDFYVFSGHKL-YGPTGiGVLYGRKALL 243
                      889999999996.577766...6788999************8...689999*****99..7*********95.7789999**9999854 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.11   4.1e+02     242     271 ..      54      84 ..      47      96 .. 0.76
   2 !   16.3   0.1   7.8e-07    0.0028      87     177 ..     109     204 ..      69     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.11
                      HHHHHTTHHHHHHHHHHHHHH.HHHHHHTST CS
  Cys_Met_Meta_PP 242 llrGlkTLslRlerhqenAlk.vAefLekhp 271
                      ++rG++TLs       en  +  A+fL++  
       EHU01042.1  54 VHRGIHTLSQQATSDMENVREqAARFLNAAS 84 
                      78*********99999998752677887654 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.8e-07
                      TS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTS.....HHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP  87 llkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsd.....leelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDnt 175
                       l+ Gd++++++  +       + v+++ g e+++   +d     l++l+  i+++t+l+ +  ++n l  v  +++i++ a++agv++++D +
       EHU01042.1 109 QLQPGDNLIITQMEHHANIVPWQMVAERCGAEIRVLPLTDngelaLDQLAGLIDSRTRLLAVTHVSNVLGTVNPVKAIVAQARAAGVVTLIDGA 202
                      5789******************************999866122225678899****************************************86 PP

                      TT CS
  Cys_Met_Meta_PP 176 fa 177
                       a
       EHU01042.1 203 QA 204
                      43 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.3   5.9e-07    0.0021      17     150 ..      63     206 ..      54     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.9e-07
                      S-SSS.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH...TTTTTT-EEEEESSS-THHH...HH.HHHTT-EEEEE-B-TTTSSB-GG CS
  DegT_DnrJ_EryC1  17 gwlts.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLra...lgvgpgdeVIvpsltFvata...na.vlelgakpvfvDvdpdtynidpa 102
                      ++ ts  ++v+e +++f +   ++  + v   t+++ l+ +     +++pgd +I++++   a +   ++ + ++ga+   +  + d   +  +
       EHU01042.1  63 QQATSdMENVREQAARFLNAASAEEIVFVKGTTEGINLVANSwagSQLQPGDNLIITQMEHHANIvpwQMvAERCGAEIRVLPLT-DNGELALD 155
                      444444788999999999999999*************999988777888********9998887522255156788887766665.99****** PP

                      GCGGG--TTEEEEEEB-...GGGB---HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 103 aieaaitertkaIlpVh...lyGqvadmdalkaiaakhglkvieDaAhAlG 150
                      +++ +i +rt+   + h   ++G v+ ++a+ a a++ g++ + D A+A+ 
       EHU01042.1 156 QLAGLIDSRTRLLAVTHvsnVLGTVNPVKAIVAQARAAGVVTLIDGAQAVM 206
                      **********755555522368***************************86 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.46   1.6e+03     268     293 ..      57      83 ..      37     158 .. 0.60
   2 ?   11.5   0.0   2.9e-05       0.1     195     232 ..     211     245 ..     159     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.46
                 GSHHHH.HHH--HHHHHHHHHHHHHHH CS
        SelA 268 klptlr.lltqkleelrakaerlqkel 293
                  + tl    t+++e++r++a r+ ++ 
  EHU01042.1  57 GIHTLSqQATSDMENVREQAARFLNAA 83 
                 466664145677888888888864433 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.9e-05
                 BHHHHHHTT-SEEEEETTSTT-SSS-EEEEE-HHHHHH CS
        SelA 195 tvqealaeGvdlvsfsGDkllGgpqaGiivGkkeliek 232
                  vq     G+d   fsG kl+G    G++ G+k l++ 
  EHU01042.1 211 DVQ---DIGCDFYVFSGHKLYGPTGIGVLYGRKALLDI 245
                 343...459*************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2915.74
//
Query:       EHU01043.1  [L=138]
Description: sulfur acceptor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-43  145.5   0.0    7.1e-43  145.3   0.0    1.0  1  SufE      Fe-S metabolism associated domain
  ------ inclusion threshold ------
      0.061   13.0   0.0       0.09   12.5   0.0    1.2  1  DUF943    Enterobacterial putative membrane protein (DUF943)


Domain annotation for each model (and alignments):
>> SufE  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0     8e-47   7.1e-43       2     121 ..      12     132 ..      11     133 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 8e-47
                 HHHHHSSSHHHHHHHHHHHHHTS----CCCCCCCEEECTSSSEEEEEEEEETTS.EEEEEEESSHHHHHHHHHHHHHCTTEECCCCTCC-TCHHHHHTT CS
        SufE   2 eefsllddweeryrylielgkklpplpeelkteenkvkGCqsqvwlaaeledgk.lkfeadsdarivkGllalllevlsgktpeeilavdledfleelg 99 
                 ++f+++ +wee+y y+ielg klp+ +e l+++en+++GCqsqvw++++ ++++ + fe+dsda+ivkGl+a++++++++ +p+ei+a+d++++++el 
  EHU01043.1  12 RNFNRCANWEEKYLYIIELGAKLPESSETLHQPENAITGCQSQVWIKMTPQADGtIAFEGDSDAAIVKGLIAIVFSLYQNLQPAEIVALDVRHWFSELA 110
                 68***********************************************998777******************************************** PP

                 SHHHHCHHHHHHHHHHHHHHHH CS
        SufE 100 lsehlspsRsnGlaamlkrika 121
                 l +hl+p+Rs+Gl+am+k+i++
  EHU01043.1 111 LVQHLTPTRSQGLEAMIKSIRH 132
                 *******************985 PP

>> DUF943  Enterobacterial putative membrane protein (DUF943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05      0.09      12      54 ..      77     119 ..      73     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
      DUF943  12 vllsalilgyllwlelrpveiiavhqrnsysssilVenlpltd 54 
                 ++ +++++ + l+++l+p ei+a + r+ +s+  lV++l  t 
  EHU01043.1  77 IVKGLIAIVFSLYQNLQPAEIVALDVRHWFSELALVQHLTPTR 119
                 5667788889****************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1143.25
//
Query:       EHU01044.1  [L=78]
Description: murein lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-25   88.8  10.2    2.6e-25   88.6  10.2    1.1  1  LPP             Lipoprotein leucine-zipper
    0.00012   22.4   8.9    0.00015   22.0   7.4    1.7  2  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot
    0.00066   19.8   0.2     0.0064   16.6   0.1    2.0  2  JIP_LZII        JNK-interacting protein  leucine zipper II
      0.001   18.8   1.0     0.0011   18.7   1.0    1.0  1  MctB            Copper transport outer membrane protein, MctB
      0.003   17.7   1.3     0.0035   17.5   1.3    1.0  1  ADIP            Afadin- and alpha -actinin-Binding
     0.0032   17.2   0.1     0.0041   16.9   0.1    1.3  1  DivIC           Septum formation initiator
     0.0046   15.2   0.3      0.005   15.1   0.3    1.0  1  EzrA            Septation ring formation regulator, EzrA
     0.0052   17.2   2.9     0.0075   16.7   2.9    1.3  1  NPV_P10         Nucleopolyhedrovirus P10 protein
     0.0068   16.6   0.2     0.0075   16.5   0.2    1.1  1  DUF948          Bacterial protein of unknown function (DUF948
     0.0087   16.0   0.2      0.011   15.7   0.2    1.1  1  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
  ------ inclusion threshold ------
       0.01   15.9   1.9      0.011   15.8   1.9    1.1  1  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
      0.011   15.1   0.2      0.012   15.1   0.2    1.0  1  Rab5-bind       Rabaptin-like protein
      0.014   15.8   0.4      0.019   15.4   0.4    1.1  1  ZapB            Cell division protein ZapB
      0.016   15.3   1.1      0.018   15.2   1.1    1.1  1  Tropomyosin_1   Tropomyosin like
      0.018   15.1   0.2      0.024   14.7   0.2    1.2  1  DUF1664         Protein of unknown function (DUF1664)
      0.018   15.0   1.7      0.021   14.8   1.7    1.0  1  YscO            Type III secretion protein YscO
      0.023   14.1   1.1      0.029   13.8   1.1    1.0  1  Cluap1          Clusterin-associated protein-1
      0.026   15.0   0.1      0.032   14.7   0.1    1.2  1  DUF16           Protein of unknown function DUF16
      0.036   12.7   0.7      0.037   12.6   0.7    1.0  1  DUF3138         Protein of unknown function (DUF3138)
      0.045   14.4   0.1      0.053   14.2   0.1    1.2  1  AKNA            AT-hook-containing transcription factor
      0.045   12.8   0.3      0.046   12.8   0.3    1.0  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
      0.049   12.5   0.4      0.054   12.4   0.4    1.0  1  Spc7            Spc7 kinetochore protein
      0.051   13.7   0.2      0.056   13.5   0.2    1.2  1  COG2            COG (conserved oligomeric Golgi) complex comp
      0.067   13.3   0.6        0.1   12.7   0.1    1.5  2  MbeD_MobD       MbeD/MobD like
       0.08   13.3   0.2       0.11   12.9   0.2    1.3  1  FlaC_arch       Flagella accessory protein C (FlaC)
        1.4    9.2   6.0       0.27   11.5   1.3    2.1  2  XhlA            Haemolysin XhlA
        3.4    6.9   7.9       0.89    8.8   4.0    1.7  2  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6  10.2   3.9e-28   2.6e-25       1      53 []      26      78 .]      26      78 .] 0.99

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 3.9e-28
         LPP  1 kldeLssqVsqLkskvdqlssdvnsakaaaqaakeEAaRANqRlDNiaqsYkK 53
                k+d+Lss+V++L++kvdqls+dvn++++++qaak++AaRANqRlDN+a+sY+K
  EHU01044.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQAHSYRK 78
                89**************************************************9 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.085        56       7      20 ..      24      37 ..      22      38 .. 0.87
   2 !   22.0   7.4   2.3e-07   0.00015       1      39 [.      32      70 ..      32      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.085
  Alanine_zipper  7 qakadqaeqdaaaa 20
                    +ak+dq+++d++ +
      EHU01044.1 24 NAKIDQLSSDVQTL 37
                    689********976 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.3e-07
  Alanine_zipper  1 aqveelqakadqaeqdaaaaksaadeAkskAdeAaarAe 39
                    ++v+ l+ak+dq++ d++a++s+ ++Ak  A+ A++r +
      EHU01044.1 32 SDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLD 70
                    689********************************9865 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.27   1.8e+02      33      46 ..      25      38 ..      25      39 .. 0.87
   2 !   16.6   0.1   9.7e-06    0.0064      32      65 ..      38      71 ..      35      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.27
    JIP_LZII 33 arvdeLtsereiLr 46
                a++d+L+s+ ++L+
  EHU01044.1 25 AKIDQLSSDVQTLN 38
                69*******99885 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.7e-06
    JIP_LZII 32 IarvdeLtsereiLreEleslqkakerlesrike 65
                 a+vd+L+++ +++r+++++ ++  +r ++r+ +
  EHU01044.1 38 NAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDN 71
                58*****************************987 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.0   1.7e-06    0.0011      22      75 ..      11      68 ..       6      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.7e-06
        MctB 22 ivlGsgvlsd....nlldtlegqveelreekeelraeadaleaqleaaddfaaavapr 75
                ++lGs++l++    + +d+l+++v++l+++ ++l+++++a++++++aa+d aa++ +r
  EHU01044.1 11 VILGSTLLAGcssnAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQR 68
                67899988888775559***************************99998877776655 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.3   5.2e-06    0.0035      57     110 ..      22      75 ..      19      78 .] 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.2e-06
        ADIP  57 slnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqk 110
                 s+n++i +l+++ + l++k+++l++ + + ++ +++++ + + ++++l ++ + 
  EHU01044.1  22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQAHS 75 
                 567888888888888888888888888888888888888888888888777664 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.1e-06    0.0041       4      54 ..      12      62 ..       7      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-06
                XXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXX CS
       DivIC  4 lfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksde 54
                +++  l  g ++  ++ ql +++++l+a++++l+++ ++  + v+  k+d 
  EHU01044.1 12 ILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDA 62
                666677777777788888888888888888888888888888888886444 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   7.6e-06     0.005     107     160 ..      24      77 ..      21      78 .] 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.6e-06
                 HHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHHH CS
        EzrA 107 eeeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsyg 160
                 ++++d++ ++++++++++++l +  +  r+ ++++k++  + +++l ++ +sy 
  EHU01044.1  24 NAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQAHSYR 77 
                 567888888888888888888888888888888888888888888888888885 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.9   1.1e-05    0.0075       9      49 ..      30      74 ..      23      78 .] 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-05
     NPV_P10  9 IradikavddkVdalqqqvddvqenlp....dvtelnekLdaqsa 49
                  +d++ ++ kVd l++ v+ v+++++    d    n++Ld+q+ 
  EHU01044.1 30 LSSDVQTLNAKVDQLSNDVNAVRSDVQaakdDAARANQRLDNQAH 74
                6689***************77766665111156678899998876 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.1e-05    0.0075      25      71 ..      24      70 ..       6      77 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-05
      DUF948 25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvd 71
                +  +d++++ +++l+ +vd+++++v+++ + v++  +d  +  +++d
  EHU01044.1 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLD 70
                33455555555555555555555555555555555555555555555 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.6e-05     0.011      11      59 ..      24      72 ..      22      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
  TMF_DNA_bd 11 DeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkklekl 59
                +++I+qL +  + L +k ++l+n +   r++++ +  + ++ +++l+++
  EHU01044.1 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQ 72
                5788888888888888888888888888888888888888888888766 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.9   1.7e-05     0.011       3      48 ..      27      72 ..      22      78 .] 0.49

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-05
  TPR_MLP1_2  3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYere 48
                +++l +++++l+++ +++ ++++++++d+++ ++ a++a+q+  ++
  EHU01044.1 27 IDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQ 72
                4445555555555555555555555555555555555555544433 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.7e-05     0.012     234     282 ..      24      72 ..       3      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
   Rab5-bind 234 trqldklqtikselEeqlkelekekaaveqlvleeknkaqrLqtELDvs 282
                 ++++d+l + ++ l++++ +l+++  av+  v+  k+ a r  + LD+ 
  EHU01044.1  24 NAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQ 72 
                 5789*******************************************86 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.4   2.9e-05     0.019      19      64 ..      26      71 ..      24      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.9e-05
        ZapB 19 titlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkk 64
                +i++L+  ++ L +++ +l++  +++++ +++ k++ +  ++rl++
  EHU01044.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDN 71
                689999999999999999*99999999********99999999985 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.1   2.8e-05     0.018      32      75 ..      29      72 ..      22      78 .] 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.8e-05
  Tropomyosin_1 32 ekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnn 75
                   +  ++++ L+ k++ql ++v+ + ++++ ak+ a  ++++  n+
     EHU01044.1 29 QLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQ 72
                   56678999*********************999988877765544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   3.6e-05     0.024      62     101 ..      28      67 ..      20      76 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-05
     DUF1664  62 rhLssridrvdkkldeqkeiskeikeevtevredlseige 101
                 ++Lss+++++++k+d+ ++  ++++++v+++++d ++ ++
  EHU01044.1  28 DQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQ 67 
                 3455555555555555555555555555555555544444 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.7   3.2e-05     0.021      67     115 ..      26      74 ..      21      78 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  67 elekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearr 115
                  ++++ + v+ L +k+ +l ++v  ++  ++a+ + +++a + l +  +
  EHU01044.1  26 KIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQAH 74 
                 6999999****************************99999999987655 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.1   4.3e-05     0.029     172     218 ..      25      71 ..      22      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-05
      Cluap1 172 eaikkvkeelektkkalenlesdeanLeakiekkkqeleraqkrLqs 218
                 ++i++++++++++++++++l++d +++ + ++  k +  ra++rL++
  EHU01044.1  25 AKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDN 71 
                 67999****************************************75 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   4.8e-05     0.032      47      82 ..      24      59 ..      10      74 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.8e-05
                .HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
       DUF16 47 geqinkleqkvekqgekikelkveqkaqgeelnkvd 82
                + +i++l   v+++++k+++l+++++a + ++++ +
  EHU01044.1 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAK 59
                567788888888888888888888888887777333 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   5.6e-05     0.037      11      57 ..      19      64 ..       4      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-05
     DUF3138 11 alaldglaaaaatadrikalkaqltalqrqvkelraalaaakaaaGg 57
                a    + a +++ ++++++l+a++++l + v+++r+ ++aak  a  
  EHU01044.1 19 A-GCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAAR 64
                4.3456788888999************************99976644 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   7.9e-05     0.053      46      80 ..      25      59 ..      15      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.9e-05
        AKNA 46 aeIyqlgqrleeLkdqtdqlkqkveefskdiaqds 80
                a+I ql   ++ L  ++dql + v+++++d++  +
  EHU01044.1 25 AKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAK 59
                89****************************96543 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3     7e-05     0.046      64     127 ..      22      71 ..      10      78 .] 0.47

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
       Atg14  64 nkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnelee 127
                 +++ak+++l s+++ l++++ +l+ ++   ++ ++++k   a+ ++               l +
  EHU01044.1  22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQR--------------LDN 71 
                 34444444444444444444444444444444444444444444333..............333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   8.1e-05     0.054     212     260 ..      24      72 ..      20      78 .] 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.1e-05
        Spc7 212 kaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleec 260
                 +a+i++++ ++++l++++++l+++++++++  + ++++ a+a++ l+++
  EHU01044.1  24 NAKIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQ 72 
                 6788888888888888888888888888888888888888888877765 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   8.5e-05     0.056      59     103 ..      29      73 ..      16      78 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.5e-05
        COG2  59 slSghLvglqeeleevesplaaarkkvesvreklsereeeveskl 103
                 +lS+  + l++++++++ +++a+r++v+++++  +++ ++++++ 
  EHU01044.1  29 QLSSDVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQA 73 
                 477888888888999999999999999999999988888888876 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00016       0.1      48      70 .]      24      46 ..      17      46 .. 0.92
   2 ?   -2.4   0.0       7.9   5.2e+03      42      48 ..      64      70 ..      52      76 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
   MbeD_MobD 48 seqvtgLsqQVesLseqvrRlsr 70
                ++++++Ls  V+ L+ +v+ ls+
  EHU01044.1 24 NAKIDQLSSDVQTLNAKVDQLSN 46
                6799*****************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.9
   MbeD_MobD 42 renaaLs 48
                r n  L 
  EHU01044.1 64 RANQRLD 70
                3333333 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00016      0.11       8      38 ..      26      56 ..      24      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
   FlaC_arch  8 klsklsteletvkkeneelsksveelkenVk 38
                k+++ls+ ++t+ ++ ++ls++v+ +  +V+
  EHU01044.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAVRSDVQ 56
                8889999999999999999999999988885 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.016        11      13      33 ..      27      47 ..      22      55 .. 0.47
   2 ?   11.5   1.3   0.00041      0.27       5      43 ..      33      71 ..      29      75 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
        XhlA 13 ldnleervdkleekaaeaeek 33
                +d l+++v++l+ k +   + 
  EHU01044.1 27 IDQLSSDVQTLNAKVDQLSND 47
                444444444444444433332 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00041
        XhlA  5 rlerietkldnleervdkleekaaeaeekiknleedlkk 43
                +++++++k+d l+++v+ +  +   a+  +  ++ +l++
  EHU01044.1 33 DVQTLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDN 71
                678888888888887777777777777776666666654 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.51   3.4e+02      15      31 ..       7      23 ..       3      25 .. 0.88
   2 ?    8.8   4.0    0.0013      0.89     119     166 ..      26      72 ..      19      77 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.51
     DUF4407 15 giGavvlltallAalsg 31
                 +Gav+l   llA++s 
  EHU01044.1  7 VLGAVILGSTLLAGCSS 23
                58************995 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
     DUF4407 119 eakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqke 166
                 ++++l++ ++ +l+a++++l ++++a ++ ++aa+++++++++ ++++
  EHU01044.1  26 KIDQLSSDVQ-TLNAKVDQLSNDVNAVRSDVQAAKDDAARANQRLDNQ 72 
                 3333333333.4677777777777777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1522  (0.0848904); expected 358.6 (0.02)
Passed bias filter:                      915  (0.0510346); expected 358.6 (0.02)
Passed Vit filter:                       181  (0.0100954); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 688.42
//
Query:       EHU01045.1  [L=470]
Description: pyruvate kinase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-153  508.8   8.5     8e-153  508.4   8.5    1.1  1  PK         Pyruvate kinase, barrel domain
      4e-27   94.8   0.8      4e-27   94.8   0.8    1.8  2  PK_C       Pyruvate kinase, alpha/beta domain
    0.00011   21.4   0.2    0.00035   19.8   0.2    1.8  1  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
       0.08   12.9   0.3       0.32   11.0   0.3    2.1  1  DUF2187    Uncharacterized protein conserved in bacteria (DUF


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.4   8.5  1.8e-156    8e-153       1     343 [.       1     340 [.       1     344 [. 0.98

  Alignments for each domain:
  == domain 1  score: 508.4 bits;  conditional E-value: 1.8e-156
                 ---SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCT CS
          PK   1 lrrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldek 99 
                 +++tkivct+GP++es e+l++l+eaG+nv+rlnfshG++ eh +ri n+r++++k+g   aillDtkGpeirt +l++g+ d++lk+g+++++++d++
  EHU01045.1   1 MKKTKIVCTIGPKTESEEMLTQLLEAGMNVMRLNFSHGDYAEHGQRITNMRAVTQKTGIPAAILLDTKGPEIRTMKLEGGN-DVSLKAGQTFTFTTDQS 98 
                 69*****************************************************************************88.***************** PP

                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                 + +  ++e +a++y++  +d+++G+tilvdDGl+++kv+ev+e++ + +ev n+g lg++kgvnlpg++++lpal+ekDk+dl fg +qgvd++aasf+
  EHU01045.1  99 VIG--NSERVAVTYSGFANDLKIGNTILVDDGLIGMKVTEVTENS-VICEVLNNGDLGENKGVNLPGVSIQLPALAEKDKRDLIFGCEQGVDFVAASFI 194
                 *97..599**********************************999.***************************************************** PP

                 -SHHHHHHHHHHHTCCC.TTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HH CS
          PK 199 rkasDvkevrevleeeg.keikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptra 296
                 rk sDv e+re l+++g ++i+ii+kienqeg++n+deil asDgimvarGDlG+eip+e+v+++qk++ikkcn+a k+vitatqml+smiknPrptra
  EHU01045.1 195 RKRSDVLEIREHLKQHGgENIQIISKIENQEGLNNFDEILDASDGIMVARGDLGVEIPVEEVIFAQKMMIKKCNKARKVVITATQMLDSMIKNPRPTRA 293
                 ***************999********************************************************************************* PP

                 HHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS- CS
          PK 297 evsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalk 343
                 e+ Dvana+lDGtDavmLsge+akG+yP e+v++ma+++ ++++ +k
  EHU01045.1 294 EAGDVANAILDGTDAVMLSGESAKGRYPLESVTIMATICERTDRVMK 340
                 ******************************************99876 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.5   1.1e+04      91     102 ..     267     278 ..     249     286 .. 0.63
   2 !   94.8   0.8   8.9e-31     4e-27       1     117 []     356     468 ..     356     468 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.5
                 S-STSEEEEEE- CS
        PK_C  91 vkkgdevvvtaG 102
                 ++k  +vv+ta 
  EHU01045.1 267 CNKARKVVITAT 278
                 345556666654 PP

  == domain 2  score: 94.8 bits;  conditional E-value: 8.9e-31
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEEE CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevvv 99 
                 ea+++ ave+ae+l+a +Ivv+te G++A+ + ky+p++ i+a+t+n  tarql l++G+ + +v +     std+++r + ++a+e+g+++kgd vv+
  EHU01045.1 356 EAVCRGAVETAEKLEAPLIVVATEGGKSAKAVRKYFPNATILALTTNATTARQLILSKGIETRMVSE---IASTDDFYRLGKEAALESGFAQKGDVVVL 451
                 89***********************************************************998875...789************************** PP

                 EE-SSSS..SS--EEEEE CS
        PK_C 100 taGtpkgesgttNtlrVv 117
                 ++G     sgttNt+ V+
  EHU01045.1 452 VSGALVP-SGTTNTASVH 468
                 ***9876.9******997 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   7.8e-08   0.00035      76     179 ..     176     277 ..     168     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.8e-08
                 HHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH.. CS
   HpcH_HpaI  76 qdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa.avegldgvflGaeDlsadlgtkrspegtevl.. 170
                 +dl+   ++g++ v   ++ ++ ++le+ + l+++        ++++++  iE +eg++n +eI+ a++   g++++  Dl +++  ++    ++++  
  EHU01045.1 176 RDLIfGCEQGVDFVAASFIRKRSDVLEIREHLKQHG------GENIQIISKIENQEGLNNFDEILdASD---GIMVARGDLGVEIPVEEVIFAQKMMik 265
                 556666788899999999999999999999999999......79********************96665...556677788887766654444444444 PP

                 ...HHHHHHHHT CS
   HpcH_HpaI 171 ...darerilta 179
                    +ar+ ++ta
  EHU01045.1 266 kcnKARKVVITA 277
                 444444444444 PP

>> DUF2187  Uncharacterized protein conserved in bacteria (DUF2187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   7.2e-05      0.32       4      34 ..     118     146 ..     116     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.2e-05
     DUF2187   4 kvGdiieFkkgdlkltGiVekvnenSViVdl 34 
                 k G++i   +g   +  +V++v enSVi+++
  EHU01045.1 118 KIGNTILVDDG--LIGMKVTEVTENSVICEV 146
                 6799***9999..45557***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3312.99
//
Query:       EHU01046.1  [L=457]
Description: multidrug efflux system transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-73  243.6  25.3    1.9e-38  131.7   4.9    2.9  4  MatE             MatE
    5.7e-09   36.2  17.8    4.4e-08   33.3   6.5    4.9  5  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
  ------ inclusion threshold ------
        2.7    7.7   5.2        3.4    7.3   0.4    3.0  3  DUF1673          Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   4.9   3.1e-42   1.9e-38       1     161 []      17     177 ..      17     177 .. 0.97
   2 ?   -2.5   0.3      0.58   3.5e+03      19      44 ..     179     204 ..     178     210 .. 0.73
   3 !  125.9  12.5   1.9e-40   1.1e-36       1     161 []     244     405 ..     244     405 .. 1.00
   4 ?   -3.3   0.3         1   6.2e+03      75      94 ..     420     439 ..     419     441 .. 0.77

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 3.1e-42
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P++l++++++ ++++dt+++g ++++++Aav++++si+ + ++f+ g+  alt+ ++q  G+++++r++e++rqg++l+++lsl+i+l+ l+++ ++++
  EHU01046.1  17 PVILAQVAQTAMGFVDTIMAGAVSATDMAAVAVGTSIWLPAILFGHGVLLALTPTIAQLNGSGRRERIAEQIRQGFWLAFFLSLLIMLV-LWNAGYFIR 114
                 9****************************************************************************************.888888888 PP

        MatE 100 lftqdee.vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                  +++ +  ++e+a+ yl++l++g+p++++++v ++ + g +ktk+++++ +++l lniplny+
  EHU01046.1 115 SMHDIDPlLAEKAEGYLHALLFGAPGYLFFQVMRNQCEGLSKTKPGMVLGFLGLMLNIPLNYV 177
                 8877666699****************************************************7 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.58
        MatE  19 lvgrlgskalAavsialsilsllfvf 44 
                 + g++g  al++v+ +  ++s++ + 
  EHU01046.1 179 IYGHFGMPALGGVGCGVATASVYWAM 204
                 56888888899998888888776554 PP

  == domain 3  score: 125.9 bits;  conditional E-value: 1.9e-40
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P+al+ ++e++l++++ llv+ lg +++A+++ial+++sl+fv++l+l++a+t++vg++lG++++++a++++ ++  +++ +++++a++++ f+++i++
  EHU01046.1 244 PVALALFFEVTLFAVVALLVSPLGIVNVAGHQIALNFSSLMFVLPLSLGVATTIRVGYRLGQGSTEQARVSAWTAQGVGVSMAVLTAIFTVTFRHHIAQ 342
                 99************************************************************************************************* PP

        MatE 100 lftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplnyl 161
                 l++++++v+ la++++ +++++++ +++q++ sgilrg+++t+ +++i++i++ ll++p +y+
  EHU01046.1 343 LYNDNPDVVTLAAQLMMLAAIYQISDSIQVIGSGILRGYKDTRSIFFITFIAYwLLGLPSGYI 405
                 ************************************************************997 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1
        MatE  75 glilllllsliiallvllfs 94 
                 g++ +++++l  a++++l++
  EHU01046.1 420 GFWCGFIVGLTSAAVMMLWR 439
                 67888888888888888775 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.4      0.18   1.1e+03      88     125 ..      31      66 ..      10      75 .. 0.68
   2 ?    0.2   1.1      0.12   6.9e+02      86     110 ..      87     111 ..      64     124 .. 0.70
   3 !   33.3   6.5   7.3e-12   4.4e-08       2     127 ..     131     258 ..     130     305 .. 0.74
   4 ?    0.4   1.4      0.11   6.4e+02      53     106 ..     316     364 ..     310     378 .. 0.61
   5 !   16.7   3.5   9.7e-07    0.0058       2      85 ..     358     448 ..     357     455 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
  Polysacc_synt_C  88 lrrllkpllaalvmgivvylllllllgllllaalalll 125
                      + +++  +++a  m++v+++   +l+ +l+++++  ll
       EHU01046.1  31 VDTIMAGAVSATDMAAVAVGTSIWLPAILFGHGV--LL 66 
                      5566677777888888888888888888888733..33 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.12
  Polysacc_synt_C  86 ellrrllkpllaalvmgivvyllll 110
                      ++++ ++  ++++l++++v++   +
       EHU01046.1  87 QIRQGFWLAFFLSLLIMLVLWNAGY 111
                      6678888888888888888444333 PP

  == domain 3  score: 33.3 bits;  conditional E-value: 7.3e-12
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli.plfgi.....vGaaiatvlallvvavlnlyalrrllgikl...e 86 
                      L  l ++++ + +++v+ +   gl ++k  ++  ++g+++++ ln+++i  +fg+     vG  +at+  + ++++++ +++rr   ++    e
       EHU01046.1 131 LHALLFGAPGYLFFQVMRNQCEGLSKTKPGMVLGFLGLMLNIPLNYVFIyGHFGMpalggVGCGVATASVYWAMFICMRFWVRRMRSMQDirpE 224
                      66788999999999***********************************84555555555************************9888886642 PP

  Polysacc_synt_C  87 llrrll...kpllaalvmgivvylllllllgllllaalalllav 127
                       +r+      +l   +++g+ v         +l+ +  ++l+av
       EHU01046.1 225 -QRWSSpsaAILKRLAGLGLPVA-------LALFFE--VTLFAV 258
                      .3333211122222222222211.......111111..223333 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.11
  Polysacc_synt_C  53 fgivGaaiatvlallvvavlnlyalrrllgiklellrrllkpllaalvmgivvy 106
                      + + G+ +++++  ++ +v   +++ +l++ +++    + ++l+a l+m +++y
       EHU01046.1 316 WTAQGVGVSMAVLTAIFTVTFRHHIAQLYNDNPD----V-VTLAAQLMMLAAIY 364
                      6666777777777777777777777777777764....2.33444444444444 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 9.7e-07
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigal.......vklilnllliplfgivGaaiatvlallvvavlnlyalrrllgikl 85 
                      +++ a++ i  s+++++s+iL g + ++ ++ +++i+           l+l+ + +p++g  G  ++ +++l+ +av++l+++rrl +++ 
       EHU01046.1 358 MMLAAIYQISDSIQVIGSGILRGYKDTRSIFFITFIAYWllglpsgYILALTDWVVPRMGPAGFWCGFIVGLTSAAVMMLWRVRRLQQLPA 448
                      78889999999*****************9998888876544444334455555555*****************************877765 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.23   1.4e+03     183     198 ..      92     107 ..      65     122 .. 0.65
   2 ?    7.3   0.4   0.00057       3.4      80     183 ..     192     280 ..     161     301 .. 0.62
   3 ?    0.7   0.1      0.06   3.6e+02     146     199 ..     313     362 ..     307     368 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.23
     DUF1673 183 evvssfisgllllllw 198
                 + +  f+s+l++l+lw
  EHU01046.1  92 FWLAFFLSLLIMLVLW 107
                 3444444444444444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00057
     DUF1673  80 nlialliglllsllliiltwkkqmqiyddikralvektvdkisikrilfkpvvIiikievtenenpvlrwllrlll.lviflliavllillsyvesiag 177
                    ++ +++  ++++++ +w   m + +di+++ + + +   + kr+                 +  +   l+l++ +++f+++a+l+  l +v+  + 
  EHU01046.1 192 GCGVATASVYWAMFICMRFWVRRMRSMQDIRPEQRWSSPSAAILKRLAG---------------LGLP-VALALFFeVTLFAVVALLVSPLGIVNVAGH 274
                 3344445566999*********************************987...............1112.222222214445555555555555555555 PP

     DUF1673 178 elqlge 183
                 +++l++
  EHU01046.1 275 QIALNF 280
                 555444 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.06
     DUF1673 146 vlrwllrllllviflliavllillsyvesiagelqlgevvssfisgllllllwl 199
                 v  w+ + +++++ +l     i+++++  + ++l++++  + +++  l++l+ +
  EHU01046.1 313 VSAWTAQGVGVSMAVLT---AIFTVTFRHHIAQLYNDNPDVVTLAAQLMMLA-A 362
                 56677777776655555...789999999999**999988888887555443.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3032.14
//
Query:       EHU01047.1  [L=222]
Description: riboflavin synthase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-45  151.7   1.9    1.9e-21   75.8   0.0    2.4  3  Lum_binding  Lumazine binding domain
  ------ inclusion threshold ------
      0.079   11.6   0.5       0.15   10.7   0.1    1.5  2  ILVD_EDD     Dehydratase family


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.1   3.2e-25   2.8e-21       1      87 []       3      87 ..       3      87 .. 0.89
   2 !   75.8   0.0   2.1e-25   1.9e-21       1      87 []     100     185 ..     100     185 .. 0.92
   3 ?   -2.5   0.0       0.6   5.4e+03       2      15 ..     190     203 ..     189     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 3.2e-25
                 -S--SEEEEEEEEE.ECGCTTEETEESGGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesiekeekledltielpelakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tGiV+++++++sie+++  ++  ++lp+     ++ G+s+a+nG+cLTV+  e++ + +++d+i+eTl+ t+lg+l++gd VN+Era
   EHU01047.1  3 TGIVQGTAEIVSIEDKGLFRTHVVRLPAELLPGLALGASVAHNGCCLTVT--EINGDLVSFDLIKETLRVTNLGDLRQGDVVNIERA 87
                 8************8888676777777755555568899***********9..899******************************96 PP

  == domain 2  score: 75.8 bits;  conditional E-value: 2.1e-25
                  -S--SEEEEEEEEE.ECGCTTEETEES..GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp..elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87 
                  +G++ +++++ +i ++e+ +++ ++++    +ky+++kG ++ ++G++LTV   +v++++f v++ipeTlerttlg+++ gd+VN+E++
   EHU01047.1 100 SGHIMTTAEICKIIRSENNREVWFRIQdpLQMKYILHKG-FVGIDGISLTVG--DVTKTKFCVHLIPETLERTTLGAKTFGDRVNIEID 185
                  6************6667777888877777999*******.***********8..89*******************************86 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.6
                  S--SEEEEEEEEE. CS
  Lum_binding   2 GiVeevgtvesiek 15 
                   iV++v +v + ++
   EHU01047.1 190 AIVDTVERVLAQRE 203
                  68888888877643 PP

>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.15   1.3e+03     463     477 ..      56      70 ..      42      88 .. 0.61
   2 ?   10.7   0.1   1.6e-05      0.15     439     493 ..     153     209 ..     149     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.15
    ILVD_EDD 463 GDiieidiekrtlel 477
                 GD+++ d+ k+tl++
  EHU01047.1  56 GDLVSFDLIKETLRV 70 
                 555555555555544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 1.6e-05
    ILVD_EDD 439 skglvighvsPEAaegGpialvedGDiieidiekrtle.levseeelaaRr.aawkp 493
                 +k  + +h  PE  e  +++    GD+++i+i+ +t   +++ e+ la+R+ aa+k+
  EHU01047.1 153 TKTKFCVHLIPETLERTTLGAKTFGDRVNIEIDPHTQAiVDTVERVLAQREaAAVKA 209
                 5666789************************998877769999********555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1611.21
//
Query:       EHU01048.1  [L=400]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-38  131.3  47.6    3.9e-38  131.3  47.6    1.8  2  MFS_1     Major Facilitator Superfamily
    1.1e-07   31.1  11.9    1.1e-07   31.1  11.9    2.5  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.39   10.6   8.1      0.089   12.7   3.0    2.7  2  DUF2474   Protein of unknown function (DUF2474)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3  47.6   6.6e-42   3.9e-38       2     345 ..      12     340 ..      11     348 .. 0.86
   2 ?   -0.5   1.5     0.077   4.6e+02     241     263 ..     352     375 ..     340     391 .. 0.43

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 6.6e-42
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++ +l +la ++++pa+  a+++++  s+  i+  ++l+ +g+a ++l++G+lsdr+Gr++vll+gl+lfalg++ +l++ ++ l+lvlr++q++g +
  EHU01048.1  12 AVLSMLGFLATDMYLPAFG-AMQQSFSTSAGMISASMSLFLAGFACGQLVWGPLSDRLGRKPVLLAGLALFALGCAGMLWVDNVILMLVLRFVQAIGVC 109
                 6788999************.******************************************************77777889988************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 a++ + +al++d +p+++ +++++ ++  ++l+++l+pllg++l+ ++ Wra+f +l+++++ +++   + l+ + p++   s++++   +g   l+  
  EHU01048.1 110 AAAVSWQALVVDRYPQSQANKVFATIMPLVALSPALAPLLGAWLIGHFHWRAIFAVLTGIAVALIL---VTLRLPSPQKNQRSSAPQ---PGFLTLLR- 201
                 ****************************************************************88...666666666666666666...12222222. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavts 298
                  +a   +     l+++++++   f++ lt +p++   + gls    +gl +    ++++i+++ + +l++r++  + l + l++ +l++ +l+ +a++ 
  EHU01048.1 202 ARAYSGNV----LMYSACSA--SFFAWLTGSPFI-LADIGLS-PADIGLSYIPQTIAFLIGGFGCRALLNRFSGATLLPWLLGVYSLSVGALFAVALSG 292
                 34444444....89999999..89999******7.9******.6777766666666666669999*********************************8 PP

       MFS_1 299 savllllvlvliGf..glgfvfpsllalasdlappeeagtasglfntag 345
                 s++l++l++ ++G+  + g ++p++ + a   +p +++g+a++l nt++
  EHU01048.1 293 SPSLTALLVPFCGMalANGAIYPIVVSSALLPFP-NATGKAAALQNTLQ 340
                 8888888555555533777778888888888887.**********9976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.077
       MFS_1 241 s.glllaglllallalvgailall 263
                 s gl++a+++  l+++v+++lal+
  EHU01048.1 352 SaGLIQALFTTTLIMMVTIGLALM 375
                 122233333333333333333322 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1  11.9   1.9e-11   1.1e-07      44     192 ..      39     181 ..      12     185 .. 0.75
   2 ?   -1.3   0.1      0.12   7.3e+02     276     314 ..     345     383 ..     314     387 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.9e-11
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s+  +++++s+fl+G ++G+l+ g+l+dr+GRk++ll++ +lf  g + + + +   +v +++v R++  igv +a v    ++    p++ + ++   
  EHU01048.1  39 SAGMISASMSLFLAGFACGQLVWGPLSDRLGRKPVLLAGLALFALGCAGMLWVD---NVILMLVLRFVQAIGVCAAAVSWQALVVDRYPQSQANKVFAT 134
                 44578999**********************************************...****************99888766666666566555555555 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflP 192
                     +++   +a  +g+ l        wr  +++   +a++l+++ l lP
  EHU01048.1 135 IMPLVALSPALAPLLGAWLIGHFH---WRAIFAVLTGIAVALILVTLRLP 181
                 555555556666666655554444...66666666666666666666666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.12
                 HTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS CS
    Sugar_tr 276 ysptifenlglsksllvtiivgvvnfvatfvaiflvdrf 314
                 ++ ++  ++gl + l +t ++++v++   +++ +l +r+
  EHU01048.1 345 FAASLAVSAGLIQALFTTTLIMMVTIGLALMGYQLQRRA 383
                 444555556666665555555555566666665555555 PP

>> DUF2474  Protein of unknown function (DUF2474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.0   1.5e-05     0.089       8      26 ..     272     290 ..     270     291 .. 0.93
   2 ?   -3.0   0.2       1.2   7.1e+03      19      32 ..     347     360 ..     346     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
     DUF2474   8 gWLvlIWaaSVlaLgvvAl 26 
                  WL++++++SV aL++vAl
  EHU01048.1 272 PWLLGVYSLSVGALFAVAL 290
                 6****************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
     DUF2474  19 laLgvvAlllRllM 32 
                 ++L+v A l   l 
  EHU01048.1 347 ASLAVSAGLIQALF 360
                 57999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2919.36
//
Query:       EHU01049.1  [L=301]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-29  102.9   1.4    2.1e-29  102.4   1.4    1.2  1  LysR_substrate  LysR substrate binding domain
    1.5e-17   63.2   0.1      3e-17   62.3   0.1    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.032   14.4   0.3       0.66   10.1   0.0    2.5  2  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   1.4   3.5e-33   2.1e-29       2     207 ..      88     290 ..      87     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 3.5e-33
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLarge 94 
                     +g rg++ i++   + +++  +++++f +++P+ el+++ +  + + d+la+g++D+ai a +      ++ +r  ++  + +v++++hpL + +
      EHU01049.1  88 NGWRGQIGIAVDCIVKPQRTRQFVRDFYRHFPDMELHISYEVFNGVWDALADGRVDVAIGATQAipVGGRFAFRDMGTLNWRCVVARQHPLTQVA 182
                     6889******************************************************************************************* PP

                     SECGGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                      ++ e+L+++p ++le+ s+ l +++  +     l+ +++l v ++++ l++v+aGl +a++p +++r+ l++g++  l lp+ ++p ++ ++ +
      EHU01049.1 183 TLDDEALRNWPSLVLEDTSRaLPRRMT-W----ALDNQRRLVVPDWQTGLDCVRAGLCVAMIPGHLARPLLDSGEMAELNLPQ-AFPeSPCCVSW 271
                     ***************999996444444.4....6888999*******************************************.7777******* PP

                     ETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflrea 207
                      ++r +spa+ +++++l +a
      EHU01049.1 272 AEDR-ASPALGWLLQYLGDA 290
                     ****.***********9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1     5e-21     3e-17       4      60 .]       7      63 ..       5      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 5e-21
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++ +ava+ gsf++AA+eL+  ++a+s  +++LE +l vpLfeR++r + L +aGe
  EHU01049.1  7 LEVVDAVARGGSFSAAAQELHRVPSAISYTVRQLETWLAVPLFERQHREVILAPAGE 63
                899******************************************999********7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.66       3      38 ..       7      42 ..       7      44 .. 0.86
   2 ?    1.7   0.0     0.049   2.9e+02      18      42 ..      72      97 ..      56     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
      HTH_28  3 leiikllaaGhsvreaArelgisrrtvyrWikryee 38
                le++ ++a+G+s ++aA+el+  ++ ++  ++++e+
  EHU01049.1  7 LEVVDAVARGGSFSAAAQELHRVPSAISYTVRQLET 42
                79*******************988888776666665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.049
      HTH_28 18 aArelgisrrtvyrWikryee.gGia 42
                + +++  +rr+++++ + ++  +Gia
  EHU01049.1 72 VIKKMDATRRQCQQLANGWRGqIGIA 97
                55788899***********9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2252.76
//
Query:       EHU01050.1  [L=341]
Description: hypoxanthine-binding DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-41  143.0   0.1    2.7e-41  141.7   0.0    1.6  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.6e-36  126.2   0.0    1.9e-36  125.9   0.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      6e-23   81.7   0.0    8.2e-23   81.3   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
    1.4e-18   66.4   0.1    2.4e-18   65.6   0.1    1.4  1  LacI          Bacterial regulatory proteins, lacI family
     0.0076   16.0   0.3       0.53   10.1   0.1    2.8  2  HTH_38        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.2   0.3      0.029   13.8   0.3    1.8  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.011   16.0   0.0      0.024   14.9   0.0    1.6  1  PucR          Purine catabolism regulatory protein-like famil
      0.011   15.7   0.0      0.038   14.0   0.0    1.9  1  HTH_3         Helix-turn-helix
      0.023   14.6   0.2         10    6.1   0.1    2.6  2  MarR_2        MarR family
      0.034   14.0   0.2       0.41   10.5   0.1    2.3  2  HTH_23        Homeodomain-like domain
      0.044   13.4   1.7       0.67    9.6   0.0    3.0  4  HTH_24        Winged helix-turn-helix DNA-binding
       0.07   12.9   0.2       0.32   10.8   0.0    2.1  2  HTH_10        HTH DNA binding domain
        0.1   12.4   0.2       0.27   11.0   0.2    1.8  1  MerR          MerR family regulatory protein
       0.12   12.2   0.1       0.31   10.9   0.1    1.7  1  TetR_N        Bacterial regulatory proteins, tetR family
       0.12   12.7   0.0       0.39   11.1   0.0    1.9  1  HTH_31        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.7   4.4e+03      11      57 ..      61     105 ..      51     141 .. 0.53
   2 !  141.7   0.0   2.3e-44   2.7e-41       2     166 .]     171     331 ..     171     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.7
                   EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSH CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqaleelglplnetvvaaddpaaa 57 
                   ++++++  ++++a++  e+ ++ ++ + ++g++l    +++d +   
    EHU01050.1  61 TLGLLA--TSSEAPYFAEIIEAIENHCFDKGYTLILGNAHNDLQKQR 105
                   455555..566666777777777777766666665555555544322 PP

  == domain 2  score: 141.7 bits;  conditional E-value: 2.3e-44
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalreagl 98 
                   ++L+e+Ghr+i+ i   g+ +  +   r++gf +alee+g+++++ ++ + d++ +++++a+   q l  +++P Av++  D +A+g++ a++e+gl
    EHU01050.1 171 RYLIERGHRDIGAIP--GQMERNTGGGRHAGFLKALEEAGIQPRAEWIVQGDFEPESGYQAMQ--QILSQKQRPSAVFCGGDIMAMGAICAADEMGL 263
                   58*************..6666678999**********************************88..33344459************************ PP

                   -TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  99 rvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   rvP+d+svig+d+   a++++P+lTtv+qp ++lG++a+e+lld++++++++ +++++ p+l+eR+S+
    EHU01050.1 264 RVPQDISVIGYDNVRNARYFTPALTTVHQPKAQLGEKALEMLLDRITSKREESQTIEVHPTLIERRSV 331
                   **********************************************999999999999999*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   1.6e-39   1.9e-36       2     272 ..      60     322 ..      59     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 1.6e-39
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEE.EEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgl.iiatsdtsfdditakaes.gipvialedaidapdgv 95 
                   ++lgl+  ++++P+f++++++i+   ++ g+ ++l +a ++ + + ++++ +++k++dgl ++++  ++ d ++  ++  +ip++ ++     +d  
    EHU01050.1  60 KTLGLLATSSEAPYFAEIIEAIENHCFDKGYTLILGNAHNDLQKQrAYLSMMAQKRVDGLlVMCSEYPD-DLLQMLEANrNIPMVVMDWGESRADFT 155
                   789*****************************99998887776667*************8256788888.8888888889*******9998888899 PP

                   -EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHH CS
  Peripla_BP_1  96 PcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivainde 190
                   ++v+ +++q g+ ++++Li++gh+  i  ++g+    t + r  Gfl al+eaG   +  ++ +g+ + e +++a++++l+++  P   a+ ++ d 
    EHU01050.1 156 DTVLDNAFQGGYLAGRYLIERGHRD-IGAIPGQMERNTGGGRHAGFLKALEEAGIQPRAEWIVQGDFEPESGYQAMQQILSQKqrPS--AVFCGGDI 249
                   999999*******************.*****************************99*************************999*9..******** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEEEE CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvllip 272
                   +a+Ga+ a+   G l+ ++++     sv +yd+     +   + + l++   p+ +lG ka +m+l+ i+ +re+++ + + 
    EHU01050.1 250 MAMGAICAADEMG-LRVPQDI-----SVIGYDNV---RNARYFTPALTTVHQPKAQLGEKALEMLLDRITSKREESQTIEVH 322
                   *************.*******.....********...66677889999999999*********************9988765 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   6.9e-26   8.2e-23       3     254 ..      64     309 ..      62     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 6.9e-26
                   EEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSH.HHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   3 vvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvds.talapalkkakaaGIpVvafdsddapsgerla 98 
                   ++ ++++ p+f ++ e++e+ + ++g++ ++ g+a+nd ++Q a ++ + +k vdg++v   +  + l ++l++  +++Ip+v++d      ++ + 
    EHU01050.1  64 LLATSSEAPYFAEIIEAIENHCFDKGYTLIL-GNAHNDLQKQRAYLSMMAQKRVDGLLVMCSEYpDDLLQMLEA--NRNIPMVVMDWG-ESRADFTD 156
                   566777788******************9999.9**********************8886665554999999998..889*********.89999999 PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTTT.ECEEEESSCC CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltanp.ldgilaandg 193
                    v  + ++ G+l+++yl e       ++ ++ G+   +    r +gf k+l+e  gi+  ae++ +++ ++e ++qa++++l++++   ++++ +d 
    EHU01050.1 157 TVLDNAFQGGYLAGRYLIERGH---RDIGAIPGQMERNTGGGRHAGFLKALEE-AGIQPRAEWIvQGDFEPESGYQAMQQILSQKQrPSAVFCGGDI 249
                   ********************99...57**************************.88888887776889***************66448********* PP

                   HHHCHHHHHHHTTT.TSTEE.EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHH CS
  Peripla_BP_4 194 maegalealeaagl.agkvv.vtgqDatpealeaikdGtidatvaqdpyelgyaavelavall 254
                   ma+ga+ a  + gl  ++++ v+g+D+   a+ +  + t   tv q+  +lg+ a+e++++ +
    EHU01050.1 250 MAMGAICAADEMGLrVPQDIsVIGYDNVRNARYFTPALT---TVHQPKAQLGEKALEMLLDRI 309
                   **************8444445**********99999988...****************98765 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.1     2e-21   2.4e-18       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                tikDVA++AGVS++TVS+v+n+++ V+e+t e V +a++el+Y P+
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVINKTRFVAENTCEAVWEAIRELHYSPS 48
                9*******************************************96 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00044      0.53      22      41 ..       3      22 ..       2      24 .. 0.91
   2 ?    2.8   0.0     0.085     1e+02      29      42 ..      42      55 ..      40      59 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00044
      HTH_38 22 slreIArrLgrspsTIsREl 41
                +++++A+r g+s++T+s  +
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVI 22
                799**************987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.085
      HTH_38 29 rLgrspsTIsRElk 42
                +L++sps ++R lk
  EHU01050.1 42 ELHYSPSAVARSLK 55
                56666666666554 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   2.4e-05     0.029      27      45 ..       1      19 [.       1      24 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.4e-05
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVw 45
                  ++++k+vA++ gvS+tTV 
    EHU01050.1  1 MATIKDVAKRAGVSTTTVS 19
                  68****************7 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     2e-05     0.024      52     114 ..      97     159 ..      73     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
        PucR  52 lkddpealaelvrelaeagvaaLviklgreipeelieaad.elglPlielpeevpfveiieevl 114
                  ++d +++++++  +a++ v +L +    e p++l+++ + ++++P++++++  + ++ +  vl
  EHU01050.1  97 AHNDLQKQRAYLSMMAQKRVDGLLVMC-SEYPDDLLQMLEaNRNIPMVVMDWGESRADFTDTVL 159
                 356999*********************.69*******9873589*******9777777666665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.2e-05     0.038      11      32 ..       3      24 ..       3      28 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
                HHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG 32
                +++++A+++Gvs +t+s+ +n 
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVINK 24
                789***************9996 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0085        10      23      44 ..       3      24 ..       1      26 [. 0.93
   2 ?    5.9   0.0    0.0098        12      26      43 ..      38      55 ..      33      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0085
                EHHHHHHHHTSSHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkr 44
                t++++a+r g+s  +vs ++++
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVINK 24
                89****************9997 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0098
                HHHHHHTSSHHHHHHHHH CS
      MarR_2 26 elarrlglsksavsrilk 43
                e  r+l++s+sav r lk
  EHU01050.1 38 EAIRELHYSPSAVARSLK 55
                6789***********997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00034      0.41      19      40 ..       3      24 ..       2      37 .. 0.87
   2 ?    0.8   0.0      0.37   4.5e+02      23      36 ..      39      52 ..      34      59 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                +++++A++ gvs  Tv++++++
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVINK 24
                89****************9887 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.37
      HTH_23 23 IAreLgvsrrTvyr 36
                + reL+ s++ v r
  EHU01050.1 39 AIRELHYSPSAVAR 52
                44566666666655 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00056      0.67      19      40 ..       3      24 ..       2      24 .. 0.91
   2 ?    1.5   0.0      0.18   2.2e+02      25      39 ..      41      55 ..      38      56 .. 0.89
   3 ?   -3.6   0.0       7.3   8.8e+03       8      19 ..     130     141 ..     129     142 .. 0.79
   4 ?   -1.4   0.0       1.5   1.8e+03      38      46 ..     201     209 ..     200     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00056
      HTH_24 19 sqreLAerlglSpstvnrrlkr 40
                +++++A+r g+S +tv+  +++
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVINK 24
                89***************98876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.18
      HTH_24 25 erlglSpstvnrrlk 39
                ++l+ Sps+v r lk
  EHU01050.1 41 RELHYSPSAVARSLK 55
                7899********997 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 7.3
      HTH_24   8 ILelLqknpris 19 
                 +L+ L++n +i+
  EHU01050.1 130 LLQMLEANRNIP 141
                 689999998887 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.5
      HTH_24  38 lkrLeeeGl 46 
                 lk Lee+G+
  EHU01050.1 201 LKALEEAGI 209
                 799****97 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.32      24      46 ..       2      24 ..       1      26 [. 0.92
   2 ?   -1.6   0.0         2   2.4e+03       8      18 ..     158     168 ..     156     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
      HTH_10 24 vtlkeLAkelGIskstlsehLrk 46
                +t+k++Ak+ G+s +t+s  ++k
  EHU01050.1  2 ATIKDVAKRAGVSTTTVSHVINK 24
                699***************99987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
      HTH_10   8 vlklAyemGYF 18 
                 vl +A++ GY 
  EHU01050.1 158 VLDNAFQGGYL 168
                 899*******6 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00023      0.27       1      16 [.       3      18 ..       3      21 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                tI++vA+++Gvs+ t+
  EHU01050.1  3 TIKDVAKRAGVSTTTV 18
                8************997 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00026      0.31      17      35 ..       2      20 ..       1      20 [. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
                --HHHHHHHHTSSHHHHHH CS
      TetR_N 17 ttvreIAkrAGvskgalYr 35
                +t++++AkrAGvs  ++ +
  EHU01050.1  2 ATIKDVAKRAGVSTTTVSH 20
                589**********999865 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00033      0.39      16      49 ..       3      35 ..       2      55 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00033
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavlea 49
                + ++vA+r+gvs +t+s++ + +r  + + + ea
  EHU01050.1  3 TIKDVAKRAGVSTTTVSHVINKTR-FVAENTCEA 35
                5689***************99888.675555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2431.95
//
Query:       EHU01051.1  [L=272]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-31  106.9   0.1    1.2e-30  105.6   0.1    1.7  1  NLPC_P60       NlpC/P60 family
     0.0016   18.6   3.3      0.014   15.5   1.9    2.4  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
     0.0067   16.1   0.2       0.53    9.9   0.0    2.7  3  DUF1175        Protein of unknown function (DUF1175)
  ------ inclusion threshold ------
      0.015   14.1   1.6      0.017   13.9   1.6    1.1  1  Presenilin     Presenilin
      0.019   15.0   2.4      0.025   14.7   0.0    2.0  2  Amidase_6      Putative amidase domain
      0.034   14.7   0.5       0.16   12.6   0.0    2.2  2  CHAP           CHAP domain
       0.35    9.9  11.3       0.48    9.4  11.3    1.3  1  Atg14          Vacuolar sorting 38 and autophagy-related subu
        3.2    6.6  10.8        4.2    6.2  10.8    1.1  1  XRN_M          Xrn1 helical domain
        3.4    6.6   7.4        1.4    7.9   5.2    1.4  1  MMM1           Maintenance of mitochondrial morphology protei
        4.8    7.5   6.2        2.9    8.2   0.0    2.4  2  LRAT           Lecithin retinol acyltransferase
        4.9    4.1   8.4          6    3.9   8.4    1.0  1  GREB1          Gene regulated by oestrogen in breast cancer
        7.3    4.6   8.7        8.9    4.3   8.7    1.1  1  Hid1           High-temperature-induced dauer-formation prote


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.1   8.1e-34   1.2e-30       1     105 []     154     264 ..     154     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 8.1e-34
                 T-BB-TT--BTT.EB-HHHHHHHHHHTT.T----SSHHHHCCCSEE..EEGGG--TTEEEEESG..TGGESEEEEEEETTEEEEEE..TTEEEEEETTS CS
    NLPC_P60   1 gkpYrwGGksps.gfDCsglvryafaka.gielprssgeqeaagkkkeiskselkrGDLvffkt..kkgisHvgiYlgngkmlhas..sekvsvsslse 93 
                 gk+Y+wGGksp+ gfDCsglv ya++++   ++pr+++e+++ +    + +++l++GDLvff+   +++++Hvg+Ylgngk+++++  ++ +++s lse
  EHU01051.1 154 GKRYQWGGKSPHtGFDCSGLVWYAYKDVvKFKIPRTANEMYHLRDAAPVNRESLEKGDLVFFRIngRGTADHVGVYLGNGKFIQSPrtGKDIQISALSE 252
                 799*******988**************************************************99999******************9999********* PP

                 TTBHSCEEECCE CS
    NLPC_P60  94 kywkkrllgvrr 105
                 +yw+++++g+rr
  EHU01051.1 253 DYWQRHYIGARR 264
                 ********9987 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.9   9.3e-06     0.014      12     128 ..      58     188 ..      55     200 .. 0.65
   2 ?    1.8   0.0      0.15   2.2e+02      24      40 ..     219     235 ..     206     271 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.3e-06
  Peptidase_C92  12 sraslseainpata..sefkHvgivvgeeg.........derlvveaaakegvrvtpLseflar....rssiavyrlkealtaeqrqkaaeaalrr 92 
                    sras ++++++ t+  + ++H+       +         +  ++v+aa k+    ++ ++ l +     + i+      + ++++r++a++  + +
     EHU01051.1  58 SRASAVQKVSKTTKtsKTTSHTTTHKTLAKttsshktlsK-KVAVNAASKKRYGHQRAAKALTAdnteTGTIKMSKAHRQRYQKARETAMAKLMGQ 152
                    5566666666665566555555444333334455778843.67777766666655555544444465555666666666677899999999999** PP

  Peptidase_C92  93 lgkpYdfgFeleddrlYCsklVakaykealgikvkt 128
                    lgk Y +g +       Cs lV+ ayk  +++k+++
     EHU01051.1 153 LGKRYQWGGKSPHTGFDCSGLVWYAYKDVVKFKIPR 188
                    ********444466677*********7776666654 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
  Peptidase_C92  24 tasefkHvgivvgeegd 40 
                     ++  +Hvg+++g+++ 
     EHU01051.1 219 GRGTADHVGVYLGNGKF 235
                    35677888888888774 PP

>> DUF1175  Protein of unknown function (DUF1175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.95   1.4e+03     101     138 ..      92     129 ..      48     137 .. 0.53
   2 !    9.9   0.0   0.00036      0.53      50      75 ..     164     189 ..     112     209 .. 0.78
   3 ?    3.4   0.0     0.036        54     143     167 ..     208     232 ..     200     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.95
     DUF1175 101 aaklfraekgkyesdgkfgafadAktLveentrfvsrd 138
                  + l +    +  s++++g+   Ak+L   nt+  +  
  EHU01051.1  92 HKTLSKKVAVNAASKKRYGHQRAAKALTADNTETGTIK 129
                 22222222233455566777777777777777665555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00036
     DUF1175  50 eeeerDCaglvryavrEalkkhdarw 75 
                 +++  DC+glv ya+++ +k + +r 
  EHU01051.1 164 PHTGFDCSGLVWYAYKDVVKFKIPRT 189
                 45667***********9998766555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.036
     DUF1175 143 kpgDllFfdqeddelPyHlmiylge 167
                 + gDl+Ff+ +   +  H+ +ylg+
  EHU01051.1 208 EKGDLVFFRINGRGTADHVGVYLGN 232
                 57*******99999999******99 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.6   1.2e-05     0.017     236     324 ..      42     130 ..      11     236 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
  Presenilin 236 eeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeeseseergvkL 324
                 +++++++++ +++s++s++++ ++ s+++++++++s+++++++ ++++ss+++ s++ + +++s+++  +++++++ ++ ++e++++k+
  EHU01051.1  42 DDDRRKRRAVKASSKKSRASAVQKVSKTTKTSKTTSHTTTHKTLAKTTSSHKTLSKKVAVNAASKKRYGHQRAAKALTADNTETGTIKM 130
                 11111111112222222222222222222222222222222222222222222222222222222232333333333333333444443 PP

>> Amidase_6  Putative amidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.5         1   1.6e+03     114     148 ..      75     109 ..      36     131 .. 0.53
   2 ?   14.7   0.0   1.7e-05     0.025      69     150 ..     175     257 ..     125     267 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
   Amidase_6 114 ngdgtydHtaivtkidsngspeeeilvaqhtkdrl 148
                 + + t++H ++   + s+ + ++++ v++ +k r+
  EHU01051.1  75 TTSHTTTHKTLAKTTSSHKTLSKKVAVNAASKKRY 109
                 11222233333333333332222556655555544 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.7e-05
   Amidase_6  69 WagaeefknylssskkatpiakgsleekvktksklklGdvvqyekngdgtydHtaivtkidsngspee...eilvaqhtkdrlnv 150
                 W   ++  ++ + ++ ++     + + +  + ++l+ Gd+v+++ ng+gt dH+ +  +  +  ++ +   +i++++ ++d +++
  EHU01051.1 175 WYAYKDVVKFKIPRTANEMYHLRDAAPV--NRESLEKGDLVFFRINGRGTADHVGVYLGNGKFIQSPRtgkDIQISALSEDYWQR 257
                 5555555555555444444444444433..23459*******************9876544332222225588888888886665 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.4   2.1e+03      42      66 ..      87     111 ..      47     132 .. 0.61
   2 ?   12.6   0.0   0.00011      0.16       8      69 ..     167     228 ..     156     238 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
                 ECSTBS--TTEEEEEETTTTBCT-E CS
        CHAP  42 nvgsstpkvGdivvfdrggeggyGH 66 
                 +++ss +     v +++ +++ yGH
  EHU01051.1  87 KTTSSHKTLSKKVAVNAASKKRYGH 111
                 2333333333333333344334777 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00011
                 T.SHHHHHHHHHHHHS.....SSSSSSECTCCHHC...EEEEEECSTBS--TTEEEEEETTTTBCT-EEEE CS
        CHAP   8 w.qCvefaywrlrqag.....gnaddWnnakkakg...yknqanvgsstpkvGdivvfdrggeggyGHVai 69 
                   +C  ++++ ++ +       +a+         +   +++ a v+++  + Gd+v+f+ +g g+ +HV++
  EHU01051.1 167 GfDCSGLVWYAYKDVVkfkipRTAN---------EmyhLRDAAPVNRESLEKGDLVFFRINGRGTADHVGV 228
                 3479999966645332222221122.........22224444456666668*******98887779****8 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  11.3   0.00032      0.48     102     173 ..      33     103 ..      22     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00032
       Atg14 102 kklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslssktlesrsslcselaklyglrr 173
                 +k++k+s+   +Rr++ ++++ + +++r++ ++k+++++k+++ + ++ ++ktl + +s+ ++l+k+  +  
  EHU01051.1  33 HKVEKKSARDDDRRKR-RAVKASSKKSRASAVQKVSKTTKTSKTTSHTTTHKTLAKTTSSHKTLSKKVAVNA 103
                 4555665555566666.799************************************9999999999877665 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.8    0.0028       4.2      70     183 ..      30     143 ..      21     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0028
       XRN_M  70 slvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeekl.seskvaksaeaeaeaeaeaeaeakaekekrekaekeleeseeeeeeeDkv 167
                 +++ kve+k  r+  +r++r+ k   k+++as++++++++++++++++ +++++++ +++ +++  + +++ +a+++kr   ++++++ + ++ e+ ++
  EHU01051.1  30 ASLHKVEKKSARDDDRRKRRAVKASSKKSRASAVQKVSKTTKTSKTTShTTTHKTLAKTTSSHKTLSKKVAVNAASKKRYGHQRAAKALTADNTETGTI 128
                 56778888888888888888888888887777777777666655444303444444444555555556666677778888888899999999999**** PP

       XRN_M 168 rLgeeGykeRYYkekf 183
                 ++ +  +++RY k++ 
  EHU01051.1 129 KMSK-AHRQRYQKARE 143
                 *975.69****98875 PP

>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.2   0.00095       1.4      14      99 ..       5      94 ..       2     101 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00095
                XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX.XXX..XXXXXXXXXXXXXXXXXX.XXXXX-HHH........HHHHHHHHTTT--TTT CS
        MMM1 14 vvllliifikffif..geasskeskasskaaerlss..skkklssvikkkkkekeessedleekkssnvveessakiesiLektyYdves 99
                + ll+++f ++f+   + +++++ kas ++ e++s+   ++++++ +k ++k++++s+ ++ +k++++ +++s++++++ L kt  ++++
  EHU01051.1  5 ITLLILAFAQLFFNiaAASPHATVKASLHKVEKKSArdDDRRKRRAVKASSKKSRASAVQKVSKTTKTSKTTSHTTTHKTLAKTTSSHKT 94
                456777777766430033334444444444444333222233333333333333333333333334445788889999999999877765 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   4.0       1.2   1.7e+03      55     104 ..      59     111 ..      25     155 .. 0.52
   2 ?    8.2   0.0    0.0019       2.9       3      34 ..     207     241 ..     205     266 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
                 S-B--EEEEEEEHHH..HHTTSEEEE--HHHHCT----HHHHHHHHHH.HTT- CS
        LRAT  55 vllkkagVrksslee..faagdklrvneksdskaeslpneeviqrAee.lvGe 104
                   + +++V k++  +   ++  + +  +k++s+++ l+++  ++ A + + G+
  EHU01051.1  59 RASAVQKVSKTTKTSktTSHTTTHKTLAKTTSSHKTLSKKVAVNAASKkRYGH 111
                 22222223222222100122222222222222222333333333332234444 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
                 --TT-EEEEE-....SSSEEEEEEEETTEEEEEE-S CS
        LRAT   3 lkrGdllevsR....tlyeHhgiyvGdgkVvHltpe 34 
                 l+ Gdl+  +R     ++ H g+y+G+gk +   + 
  EHU01051.1 207 LEKGDLVF-FRingrGTADHVGVYLGNGKFIQSPRT 241
                 67788887.44455599***********99876544 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   8.4     0.004         6    1095    1195 ..      33     133 ..      10     161 .. 0.43

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.004
       GREB1 1095 sdaeklsstdned.eelqedgerpksnssavqstsdsvaadaaeessktspvkvekseskdavesglsskasakselseasaaaasaseeakspkas 1190
                  +  ek+s+ d +  +  + +++++ks++savq++s+++ + +++++++t ++  ++++s++++++++  +a++k+ + ++ aa+a + +++ +  + 
  EHU01051.1   33 HKVEKKSARDDDRrKRRAVKASSKKSRASAVQKVSKTTKTSKTTSHTTTHKTLAKTTSSHKTLSKKVAVNAASKKRYGHQRAAKALTADNT-ETGTI 128 
                  2334444444333133334444555556666666655555444444444444444444555555555555555544444222111111111.11111 PP

       GREB1 1191 vtsee 1195
                   +s+ 
  EHU01051.1  129 KMSKA 133 
                  11111 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.7     0.006       8.9     594     701 ..      34     140 ..       8     159 .. 0.39

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.006
        Hid1 594 sideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarake.saesteesrqesatskkspsgm 691
                 ++++++ + +++++r    +++s++ + s+v+++ ++ ++++ +s+++ +k+  ++ ss+ +  +++++ +a++k+   ++++ ++  +++ +++  +m
  EHU01051.1  34 KVEKKSARDDDRRKRRAV-KASSKKSRASAVQKVSKTTKTSKTTSHTTTHKTLAKTTSSHKTL-SKKVAVNAASKKrYGHQRAAKALTADNTETGTIKM 130
                 222222222222222221.22222222333333333333333333333333322222222111.22222222222202233333333333333444444 PP

        Hid1 692 sqsaeekftp 701
                 s++ ++++++
  EHU01051.1 131 SKAHRQRYQK 140
                 4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2525  (0.140833); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 1887.83
//
Query:       EHU01052.1  [L=110]
Description: monothiol glutaredoxin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-19   67.7   0.0      1e-18   67.3   0.0    1.2  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   5.8e-23     1e-18       1      60 []      16      80 ..      16      80 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 5.8e-23
                  EEEEES.....TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftk.....ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60
                  ++l++k     p C+++++a+++L  +g +f+++d++++++ir+el ++++++t+Pq+++dg++v
    EHU01052.1 16 ILLYMKgspklPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELV 80
                  689***********************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 884.62
//
Query:       EHU01053.1  [L=223]
Description: ribonuclease T (RNase T) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-39  135.4   0.1      3e-39  135.2   0.1    1.0  1  RNase_T   Exonuclease
    1.9e-06   27.9   0.1    2.7e-05   24.2   0.1    2.0  1  DUF5051   3' exoribonuclease, RNase T-like


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.1   3.4e-43     3e-39       1     165 []      20     194 ..      20     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 3.4e-43
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCC...EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHH.HHTCEBHHHHHHHHHHHHHHH........TCC CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggen...eigetfhfyvkptelakltdecteftgitqem.ldeapsfkevleefkellrkl........all 87 
                 vviD+Et+g++a ++d+++e+aai+++++++   + +et hf+v+p+ ++ l +e+++ftgi++ + l++a s++e+l ++++++rk+        a++
  EHU01053.1  20 VVIDVETAGFNA-QTDALLEVAAITLKMDDEgwlHHDETLHFHVEPFVGSLLHPEALAFTGIDPTNpLRGAVSEYEALHAIFKMVRKGiketgcnrAIM 117
                 8***********.9************************************************************************99*********** PP

                 CETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..HHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T  88 vahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelar..tsldklaeklgleedgr.aHrAldDaeataklf 165
                 vahna fd++f++aa +r   +   krn+f++++++d+a+l++l    t+l+k+++ +g+ +d + aH+Al+D++ ta+lf
  EHU01053.1 118 VAHNATFDLNFMNAAAERA-GL---KRNPFHPFATFDTAALSGLVLgqTVLAKACKAAGMAFDSSqAHSALYDTQQTATLF 194
                 ******************9.55...6****************************************************998 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1     3e-09   2.7e-05       3     164 ..      20     196 ..      19     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3e-09
     DUF5051   3 lmiDiEtlgne.etaelvsIGaVff..petG..eFyaeidlesdeeag..idaetieWWlkqskearaellkdtqeakslkdalqaleeFl........ 86 
                 ++iD+Et+g + +t +l++++a+++  +++G     ++ +++ +   g   + e+++      ++           a s  +al a+++ +        
  EHU01053.1  20 VVIDVETAGFNaQTDALLEVAAITLkmDDEGwlHHDETLHFHVEPFVGslLHPEALAFTGIDPTNPL-------RGAVSEYEALHAIFKMVrkgiketg 111
                 579*****98889999*******99966666886666666655533444444455544332222222.......3455666666666666666669887 PP

     DUF5051  87 ekslkvwangasfDlviLraafel.......lipwkywndrdvrtlvalapelekgeekkreipfe.gvkHnALaDAkhqakavsa 164
                  +   ++a++a+fDl  ++aa e+         p+  +++  ++ lv ++  l k + k   + f+  ++H+AL+D +  a+++ +
  EHU01053.1 112 CNRAIMVAHNATFDLNFMNAAAERaglkrnpFHPFATFDTAALSGLVLGQTVLAKAC-KAAGMAFDsSQAHSALYDTQQTATLFCE 196
                 556779***************999***99753799999999******9999999997.55556666599*********99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1788.49
//
Query:       EHU01054.1  [L=135]
Description: glyoxalase I, Ni-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-25   87.3   0.0    1.1e-24   87.0   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.3e-07   31.8   0.0    7.2e-07   29.4   0.0    1.9  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.7e-06   28.7   0.0    2.7e-06   28.1   0.0    1.3  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.054   13.6   0.0      0.084   12.9   0.0    1.4  1  CppA_N        CppA N-terminal


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   2.5e-28   1.1e-24       2     128 .]       3     123 ..       2     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 2.5e-28
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEEST..EEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTT CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteet..eglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeag 98 
                 + h++l+vgdl++s+dFYt vLG++l+++++n e +      ++   ++g +iel++n+  ++++ +           ++ial v+dv+++++r++  g
  EHU01054.1   3 LLHTMLRVGDLQRSIDFYTLVLGMRLLRQSENAEYKytLAFVGYTEESEGAVIELTYNWGVDSYDLGN--------AYGHIALGVDDVAATCERIRNDG 93 
                 78*****************************944443344455566778899***************9........8********************** PP

                 GEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  99 vkvvaepgrhyfgalysfyfrDpdGillei 128
                 ++v++e g  + g+ ++++++DpdG+++e+
  EHU01054.1  94 GNVTREAGPVKGGSTIIAFVEDPDGYKIEL 123
                 ****************************96 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.6e-10   7.2e-07       2     109 .]       5     112 ..       4     112 .. 0.87
   2 ?    1.5   0.0     0.079   3.6e+02      38      56 ..     110     127 ..     104     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.6e-10
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETT..EEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEEE CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgs..vqieLieplegpeflaehgeglhhlaywvddldaavarleeqGfevvqk 96 
                   ++ + V Dl++ +++++ +lG++  ++ ++ +++++laf+ + ++s    ieL  ++  ++   + g+   h+a+ vdd+ a+++r ++ G  v+ +
    EHU01054.1   5 HTMLRVGDLQRSIDFYTLVLGMRLLRQSENAEYKYTLAFVGYTEESegAVIELTYNWGVDSY--DLGNAYGHIALGVDDVAATCERIRNDGGNVTRE 99 
                   6667799********************************88877777999*******99665..8999999************************76 PP

                   EE-GGGTT-EEEE CS
  Glyoxalase_4  97 gvragaagrrfay 109
                   +  + ++++ +a+
    EHU01054.1 100 AGPVKGGSTIIAF 112
                   5444444666665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.079
                   EEEEEEEETTEEEEEEEES CS
  Glyoxalase_4  38 lafallgsgsvqieLiepl 56 
                   +af++  +g  +ieLie+ 
    EHU01054.1 110 IAFVEDPDG-YKIELIENK 127
                   678888888.8*****986 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     6e-10   2.7e-06       3     105 ..       7     122 ..       5     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 6e-10
  Glyoxalase_6   3 vldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe...................paknrvHldlavedldaevarlvalG 80 
                   +l + d ++ ++F+  +lg+++ r++    + +        + tl+f    e                    ++   H+ l v+d++a+++r+ + G
    EHU01054.1   7 MLRVGDLQRSIDFYTLVLGMRLLRQS----ENAEY------KYTLAFVGYTEesegavieltynwgvdsydLGNAYGHIALGVDDVAATCERIRNDG 93 
                   6778899*****************99....22222......336666555555667777777777788886334469******************** PP

  Glyoxalase_6  81 Arvlreprdgthgr....vlaDPeGneFc 105
                   + v re    ++g      ++DP+G    
    EHU01054.1  94 GNVTREAGPVKGGStiiaFVEDPDGYKIE 122
                   ******999887779**********8765 PP

>> CppA_N  CppA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.9e-05     0.084       3      32 ..       5      35 ..       3      61 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
      CppA_N  3 tpvlrvnnrdlniafyqetlGlkllse.ena 32
                + +lrv + +  i+fy   lG++ll + ena
  EHU01054.1  5 HTMLRVGDLQRSIDFYTLVLGMRLLRQsENA 35
                5689********************9642665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1022.69
//
Query:       EHU01055.1  [L=365]
Description: N-ethylmaleimide reductase, FMN-linked [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-87  292.7   0.0    4.6e-87  292.5   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5   0.0   2.6e-91   4.6e-87       1     342 []       5     344 ..       5     344 .. 0.93

  Alignments for each domain:
  == domain 1  score: 292.5 bits;  conditional E-value: 2.6e-91
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +LF+P+k+g  t+ +R+ map+trlr+ ++g +++ l+aeyy+qra    +liitea+ v+ + +g+ +apg++++eqi++w+ + e +h+ g+  +
    EHU01055.1   5 QLFRPLKVGAITVPHRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRAG--AGLIITEATQVSFQAKGYAGAPGLHTQEQIAAWKVINEGIHQAGGHSA 99 
                   59*******************************************98..9*********************************************** PP

                   EEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-............S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH CS
  Oxidored_FMN  98 vqlwhlGreakseyladqevdspsdpvaldaqee...........esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFl 183
                   vqlwh+Gr ++   +++ +  +p +p+a++a  +           +  +  +++el+ +ei+q++ +f +AA++a+eA fD  e h+a+GYL++qFl
    EHU01055.1 100 VQLWHTGRISHNSVQPEGK--APVAPSAIPAGTRtslraedgsvyREDT-SMPRELSVSEIQQIVADFGQAAANAREADFDLLELHSAHGYLMHQFL 193
                   **********777777766..9999999999988999999998643333.339******************************************** PP

                   -TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH.HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC CS
  Oxidored_FMN 184 spksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet.aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte 279
                   sp sn+rtD ygGs+enR rF+levvda     +++rvg+R+Sp + +++  ++ +    ++  ++el+kr +     a++h+ e  + +ag +  +
    EHU01055.1 194 SPSSNHRTDAYGGSVENRGRFALEVVDAAIANWSADRVGIRVSPVGSFQNLDNGPNEeEDALWFIAELAKRNI-----AYLHMSE--PDWAGGTPYS 283
                   **********************************************999876665553678888999999877.....9******..6788887766 PP

                   TTHHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 280 qekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                    + + ++v+    + +i++g ++ e+ a++  ++g +d va+gR  +a+pdl+++l+k+ pln
    EHU01055.1 284 -DAFCQKVRDTFPGVIIGAGAYTVEK-ADDLISRGLIDAVAFGRDYIANPDLAQRLQKDAPLN 344
                   .7899********************9.9999***************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2607.90
//
Query:       EHU01056.1  [L=200]
Description: putative TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-13   49.9   0.0    3.6e-13   49.5   0.0    1.2  1  TetR_C_13  Tetracyclin repressor-like, C-terminal domain
    3.7e-09   36.2   0.0      1e-08   34.8   0.0    1.8  2  TetR_N     Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0     4e-17   3.6e-13       4     106 ..      85     187 ..      82     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 4e-17
                 HHHHHHHHHHHHHHHTTTT----HHHHHHHTGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS-HHHHHHHHHHHHHHHHHHHHHHTSSHH CS
   TetR_C_13   4 erlrafvedakagmeryefkrGCLvGnLgqEvaalpesfrerleevledwqkrvaacleeaqeageiaadadaeelaeffwigWeGAvlRaklerstqP 102
                 erl a++++a   +er++   GCL   L  Ev +l+e +r +l++  ++  + +a++l++aq++++++  + +e+lae+++  W GA l +kl r++qP
  EHU01056.1  85 ERLLAHFRHALDLFERQGNIVGCLSVKLSAEVCDLSEPMRIALQQGASHVIAAYAKALTQAQHEEDLSLPSPPEQLAELLYVLWLGASLQSKLSRNAQP 183
                 689999999****************************************************************************************** PP

                 HHHH CS
   TetR_C_13 103 lelf 106
                 ++l 
  EHU01056.1 184 MRLA 187
                 *975 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.2e-12     1e-08       2      42 ..      15      55 ..      14      60 .. 0.92
   2 ?   -2.5   0.0       0.5   4.5e+03       5      13 ..      94     102 ..      92     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.2e-12
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKee 42
                l +++ l  +rG+ +++++++  +A++ kg++Y+yFpsKe+
  EHU01056.1 15 LTTGESLCLQRGFTGMGLSQLLNQAQIPKGSFYYYFPSKEA 55
                777888999*******************************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.5
                 HHHHHHHHH CS
      TetR_N   5 ArelfaerG 13 
                 A+ lf+++G
  EHU01056.1  94 ALDLFERQG 102
                 8999*9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1579.40
//
Query:       EHU01057.1  [L=79]
Description: uncharacterized DUF1289 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-18   65.1   6.7    4.5e-18   64.8   6.7    1.1  1  DUF1289   Protein of unknown function (DUF1289)


Domain annotation for each model (and alignments):
>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   6.7   2.5e-22   4.5e-18       1      48 []      12      58 ..      12      58 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 2.5e-22
     DUF1289  1 sPCigvCkldpedglClGCgRtldEiaaWssmsdeerravlarleqrr 48
                sPC ++C++d ++g+C+GC+R+++E+++W ++sd+++r+vl+ ++qrr
  EHU01057.1 12 SPCRRICETD-SRGYCKGCLRSREERFNWLQYSDSQKREVLRLCHQRR 58
                9*********.***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 764.10
//
Query:       EHU01058.1  [L=231]
Description: putative oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-35  123.2   0.0    1.4e-35  122.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0     8e-40   1.4e-35       1     198 [.      16     218 ..      16     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 8e-40
                   .EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....--SSSTTSSSS-HH.HHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.....dlrdaeiksglske.niresle 91 
                   +l++G w+l   + +++++ +  +++ l+ Gi ++D A++Yg+ ++e  +Geal ++++ r+ + i+tK+     ++  ++i  +++++ +i++s e
    EHU01058.1  16 PLIMGYWRLME-WGMTPQQLVGFIEHHLSLGISTVDHADIYGDYRCEAAFGEALRQAPGLRDRLQIVTKCgiatrAKPEHQIGHYITEKaHIVASAE 111
                   6999****998.6*********************************************************88876555556666655547******* PP

                   HHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  92 eslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkgvpli 187
                   +sl  ++td++Dlll+Hrpdp +    ev++a+ +l+++Gk+ ++GvSnf+  q   +++  +  +v++q e +++ +++   g l+ c+++ ++ +
    EHU01058.1 112 RSLGHFNTDRLDLLLIHRPDPLMA-ADEVAEAFLHLHQAGKVLHFGVSNFTPSQFALLQSRLPFGLVTNQLEISPVqQHVLLDGSLDHCQQQRLRPM 207
                   ************************.*********************************9999**************999****************** PP

                   EBSTTGGGTTG CS
  Aldo_ket_red 188 aysplggGllt 198
                   a+s+lggG l 
    EHU01058.1 208 AWSCLGGGRLF 218
                   ********885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1926.63
//
Query:       EHU01059.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-45  152.2   0.0    1.6e-44  150.8   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   1.8e-48   1.6e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 1.8e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld+eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHU01059.1  19 INRGSITFWLDDEAIQAWYESPTPPSRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHU01059.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHU01059.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHU01059.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHU01059.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHU01059.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2268.48
//
Query:       EHU01060.1  [L=98]
Description: aldo/keto reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-07   28.3   0.0    9.9e-07   28.2   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.5e-11   9.9e-07     225     292 ..      23      91 ..       7      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.5e-11
                   HHHHHHHHHHHHHHTT-.-HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 225 nldaaeelselakehgv.slaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                   +  + +el+++ +e g  sl+q+++++++  p +  +i+g+ + +++++ ++a  l+ls +++ +++++
    EHU01060.1  23 KAPLRDELEAIRQEIGAsSLEQVVYAWVMRLPSKPLPIIGSGKTHRITEAAGAAGLTLSRQQWFRIRKA 91 
                   5577899*******8888*********************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 745.10
//
Query:       EHU01061.1  [L=172]
Description: superoxide dismutase, Cu, Zn [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-31  109.8   0.6    1.6e-31  109.4   0.6    1.1  1  Sod_Cu         Copper/zinc superoxide dismutase (SODC)
  ------ inclusion threshold ------
       0.32   10.9   4.7        2.8    7.8   3.6    2.2  2  SEF14_adhesin  SEF14-like adhesin


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.6   1.8e-35   1.6e-31       6     142 .]      35     172 .]      31     172 .] 0.88

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.8e-35
                 EEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTT........TGGG-SB-STT-.C.SSTTTTTCS-TTEEEEEEESTTSEEEEE CS
      Sod_Cu   6 gevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsag........fksagghfnptgkk.hgapndeerhaGDLgnievdadgtakle 95 
                 g++ Gtv++++++     ++++t  ++gl+pg  hgfH+H++g+c++g          +aggh++p ++  h +p  +e h+GDL+ ++vda+g+a++ 
  EHU01061.1  35 GNAIGTVNIEETQ----YGLQLTPMLEGLKPG-IHGFHVHAKGSCEPGesegkrvaAGAAGGHLDPANTGkHLGPY-AEGHLGDLPALYVDAQGKATYP 127
                 5678******865....46***********96.6*************9*******9999******97754044454.489******************* PP

                 EEEESC.BCSTTTBCTTEEEEEESS---TT.SCHHHTTSSSEEEEEEE CS
      Sod_Cu  96 ittdklvslkgensilgralvihagaDdlg.eskptgnagariacGvI 142
                 + + +  +l+   ++ g+al++h g D+++ +++p g+ gar+acGvI
  EHU01061.1 128 VLAPRIKTLS---EVKGKALMVHVGGDNHAdHPQPLGGGGARFACGVI 172
                 *966656666...79**************999***************9 PP

>> SEF14_adhesin  SEF14-like adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.6   0.00032       2.8       4      32 ..       4      32 ..       2      52 .. 0.69
   2 ?    1.9   0.0      0.02   1.8e+02      52      81 ..      80     109 ..      66     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00032
                   XXXXXXXXXXXXXXXXXXXEEEEEEEEEE CS
  SEF14_adhesin  4 lavlvlaliacGaanaatavGdkavvraa 32
                    a+++ +l+acGaa+aa+      +v   
     EHU01061.1  4 NAIAIATLLACGAAQAASEQVTIHAVSVQ 32
                   589*************9864444444444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.02
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  SEF14_adhesin  52 sGsavaagqklGtlsirltGshasvsvaGd 81 
                     G  vaag   G l+   tG h + +  G+
     EHU01061.1  80 EGKRVAAGAAGGHLDPANTGKHLGPYAEGH 109
                    5899******************99887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1397.78
//
Query:       EHU01062.1  [L=137]
Description: hypothetical protein CKS_3447 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   15.5   0.2     0.0068   15.2   0.2    1.0  1  Tektin     Tektin family
  ------ inclusion threshold ------
       0.04   13.1   0.0      0.051   12.8   0.0    1.2  1  CobD_Cbib  CobD/Cbib protein


Domain annotation for each model (and alignments):
>> Tektin  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   7.6e-07    0.0068     125     180 ..      22      79 ..      20      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.6e-07
      Tektin 125 veliegvqellkrtleqaeeqlrllraa..khkLekdlsdKkeAleiDeeclslknts 180
                  +li ++ + l+rt+++    lr  + a  +++L++d+++K eA+++ +   s ++t+
  EHU01062.1  22 TQLITETGRELQRTIDTSSARLRCEEIAkgRERLSRDVRQKLEAQHCQNVLRSATETN 79 
                 6899**************99999766552279***************99998888776 PP

>> CobD_Cbib  CobD/Cbib protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.7e-06     0.051      87     137 ..      29      80 ..      23     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.7e-06
   CobD_Cbib  87 lrsLleevrkvakalk.gdleaaReavsmiVgRdtseldeeeiarAavEsva 137
                 +r L++++    + l+ ++++++Re++s+ V+ + ++   ++++r+a E+  
  EHU01062.1  29 GRELQRTIDTSSARLRcEEIAKGRERLSRDVRQKLEAQHCQNVLRSATETNF 80 
                 688999999999999779*******************************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1041.39
//
Query:       EHU01063.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01063.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01063.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01063.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01063.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 798.87
//
Query:       EHU01064.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01064.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1037.74
//
Query:       EHU01065.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.0    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.1   0.0  4.7e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU01065.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.7e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01065.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01065.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01065.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01065.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01065.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01065.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01065.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01065.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01065.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01065.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU01065.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01065.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01065.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01065.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01065.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01065.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01065.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01065.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01065.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01065.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01065.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01065.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01065.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01065.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01065.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01065.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01065.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01065.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01065.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01065.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01065.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01065.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.37
# Mc/sec: 4205.06
//
Query:       EHU01066.1  [L=80]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.2   8.1    1.5e-14   53.7   8.1    1.2  1  DUF1656   Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   8.1   8.4e-19   1.5e-14       5      55 ..      21      71 ..      18      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 8.4e-19
     DUF1656  5 gGvyvPpllvlallAllltlllrrllarlglyrlvWhpaLfdlAlfvcllg 55
                + +y+Ppl+ ++l++++l+l ++ ll+ + ++  vWhp Lfdl+lfv+++ 
  EHU01066.1 21 ASLYFPPLFKAVLAGFVLWLFIHPLLRGWLASGEVWHPTLFDLSLFVLCVT 71
                689*********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 650.00
//
Query:       EHU01067.1  [L=145]
Description: DNA-binding transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-18   65.4   0.8    7.7e-18   64.2   0.2    1.9  2  MarR            MarR family
    2.9e-12   46.3   0.1    6.7e-12   45.1   0.1    1.6  1  MarR_2          MarR family
    6.1e-11   42.6   0.2      1e-10   41.9   0.2    1.4  1  HTH_27          Winged helix DNA-binding domain
    3.8e-05   23.6   1.9    0.00018   21.4   0.9    2.5  2  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0015   18.1   0.1     0.0051   16.3   0.1    2.0  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0028   17.8   0.0      0.004   17.3   0.0    1.4  1  B-block_TFIIIC  B-block binding subunit of TFIIIC
      0.004   17.0   0.8      0.017   15.0   0.2    2.0  2  HxlR            HxlR-like helix-turn-helix
      0.005   16.6   0.2     0.0056   16.5   0.2    1.1  1  DUF1845         Domain of unknown function (DUF1845)
     0.0059   16.2   0.2      0.036   13.7   0.0    2.2  2  GntR            Bacterial regulatory proteins, gntR family
     0.0084   16.0   0.0       0.03   14.2   0.0    1.8  2  TrmB            Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.062   13.3   0.0    2.0  2  HTH_36          Helix-turn-helix domain
      0.013   15.5   0.0      0.032   14.3   0.0    1.6  1  HTH_20          Helix-turn-helix domain
      0.014   15.2   1.2       0.17   11.5   0.1    2.1  2  DUF4423         Domain of unknown function (DUF4423)
      0.027   14.3   0.0       0.12   12.3   0.0    2.0  2  HTH_5           Bacterial regulatory protein, arsR family
      0.031   14.1   0.0      0.098   12.4   0.0    1.8  1  LexA_DNA_bind   LexA DNA binding domain
      0.038   14.0   0.1      0.049   13.7   0.1    1.2  1  Replic_Relax    Replication-relaxation
       0.04   14.0   0.5       0.16   12.1   0.3    2.2  2  GlnD_UR_UTase   GlnD PII-uridylyltransferase
      0.089   12.9   0.1       0.24   11.5   0.0    1.7  2  RsbU_N          Phosphoserine phosphatase RsbU, N-terminal do
       0.11   12.7   0.0       0.26   11.5   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.2   8.2e-21   7.7e-18       1      58 [.      29      87 ..      29      88 .. 0.98
   2 ?   -1.4   0.0       2.5   2.4e+03      34      44 ..     126     136 ..     122     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 8.2e-21
                --HHHHHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  1 ltltqfviLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                lt+t++v+L+++++ +p +s+++Lak++g++++++ r+ld+Le+kGli+R+ +  DrR+
  EHU01067.1 29 LTQTHWVTLHNIHQLPPeQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRTTCAHDRRA 87
                8*********************************************************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.5
                 HHHHHHHHHHT CS
        MarR  34 vtrvldrLekk 44 
                 + +++ rLek+
  EHU01067.1 126 MVTLIARLEKN 136
                 56789999986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1   7.1e-15   6.7e-12       3      62 .]      29      87 ..      27      87 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 7.1e-15
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                lt +++  L++++  p++  ++ +la++ g++++++ r+l+ L+++GL++r+++ +D+Ra
  EHU01067.1 29 LTQTHWVTLHNIHQLPPE-QSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRTTCAHDRRA 87
                89**************97.7***************************************7 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.2   1.1e-13     1e-10       1      65 [.      29      93 ..      29      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.1e-13
      HTH_27  1 ltrqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlT 65
                lt+ ++++Lh+i     ++++ +l+++  +e+ + +  l++L+ekGL++rt++++drr+kr++lT
  EHU01067.1 29 LTQTHWVTLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRTTCAHDRRAKRIKLT 93
                7999*********66666666*******************************************9 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.9   1.9e-07   0.00018      21      54 ..      46      79 ..       9      97 .. 0.76
   2 ?    0.7   0.1      0.56   5.3e+02      18      42 ..     106     127 ..      84     135 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.9e-07
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrg 54
                  +q +lA  +G+ + ++ r+l +L+++gli+r 
  EHU01067.1 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRT 79
                56899**************************953 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.56
                 EEEEHHHHHHHHHTTSSHHHHHHHH CS
   HTH_Crp_2  18 ielpltqeelAsmlGltretvsril 42 
                 + +++t++++  + G++r  ++++ 
  EHU01067.1 106 V-IDITRDDI--LSGISRDEINQMV 127
                 3.77777777..6677777777765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.4e-06    0.0051      16      48 .]      45      77 ..      45      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-06
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                p  sq +LA+++g+ ++ + r l++Lee+GlI+
  EHU01067.1 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77
                6689****************************6 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.3e-06     0.004      21      55 ..      49      86 ..      47     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.3e-06
  B-block_TFIIIC 21 qsdLakeskqdprslfyrlksLekkgLIvkqsii...d 55
                    q +Lak+++++  sl   l+ Le+kgLI++ +     +
      EHU01067.1 49 QIQLAKAIGIEQPSLVRTLDQLEEKGLITRTTCAhdrR 86
                    889***************************99865440 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.56   5.3e+02      28      59 ..      13      45 ..       6      49 .. 0.67
   2 !   15.0   0.2   1.8e-05     0.017      23      80 ..      51     107 ..      33     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.56
                STTS-HHHHHHHHHHHH..HTTSEEEEEESSSS- CS
        HxlR 28 lpkisqkmLaqrLreLe..qdglierevypevPp 59
                +  i + ++ qrL+ Le  q + +  + +++ Pp
  EHU01067.1 13 V-RIWRALIDQRLKPLEltQTHWVTLHNIHQLPP 45
                4.67788888999966622556677777777776 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.8e-05
                 HHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHH CS
        HxlR  23 elkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelk 80 
                 +l++a+ +i q  L+++L +Le++gli r++  +       +lt++ + + + ++++ 
  EHU01067.1  51 QLAKAI-GIEQPSLVRTLDQLEEKGLITRTTCAHDRRAKRIKLTQQAEPVIQQVEHVI 107
                 677888.9************************99999999999998887777666655 PP

>> DUF1845  Domain of unknown function (DUF1845)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   5.9e-06    0.0056      93     205 ..      32     141 ..      13     145 .] 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.9e-06
     DUF1845  93 pkglslselasssPlkvplyfrsplGyravyllvdyDqlarkvltarhiglis.rkevedllkkgaravRkvfglvqrYrasgvtraDiaaktara..k 188
                 ++ ++l+++ +  P + +++ +  +G +   l+   Dql  k l  r +   + r+++ +l ++++ ++++v +++       +tr+Di++  +r   +
  EHU01067.1  32 THWVTLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRTTCAHDrRAKRIKLTQQAEPVIQQVEHVID------ITRDDILSGISRDeiN 124
                 5678999**********************************998887765555055556666666666666666666......*******987666557 PP

     DUF1845 189 eaierlGelpedilsge 205
                 + ++++  l+++il+ +
  EHU01067.1 125 QMVTLIARLEKNILELQ 141
                 88899999999999876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.8e-05     0.036      23      56 ..      42      78 ..      37      80 .. 0.87
   2 ?   -0.9   0.0       1.4   1.3e+03       3      17 ..     104     118 ..     102     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
                B---HH...HHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR 23 kLPser...eLaaefgVsrttvReALrrLeaeglver 56
                +LP+e+   +La+++g+  +++ + L++Le++gl++r
  EHU01067.1 42 QLPPEQsqiQLAKAIGIEQPSLVRTLDQLEEKGLITR 78
                5777774447*************************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHTTS CS
        GntR   3 eqvyerLredIlsge 17 
                 e+v +  r+dIlsg 
  EHU01067.1 104 EHVIDITRDDILSGI 118
                 78889999****996 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.2e-05      0.03      27      55 ..      51      79 ..      46      89 .. 0.92
   2 ?   -1.5   0.0       2.5   2.4e+03       5      23 ..     117     135 ..     115     143 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-05
                HHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 27 eiaeelgvprskvYevLrsLedkGlVere 55
                ++a+++g+++++  ++L +Le+kGl++r 
  EHU01067.1 51 QLAKAIGIEQPSLVRTLDQLEEKGLITRT 79
                689***********************986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.5
                 HHHHHCCCHCHHHHHHCCC CS
        TrmB   5 GLseyEakvYlaLlklgpa 23 
                 G+s  E+   ++L+++ ++
  EHU01067.1 117 GISRDEINQMVTLIARLEK 135
                 5566666655666555555 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.6e-05     0.062      27      55 .]      48      76 ..      38      76 .. 0.92
   2 ?   -1.1   0.0         2   1.9e+03      35      51 ..     116     135 ..     113     136 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                sq  lak+ g+   + +r ++ Le++G+i
  EHU01067.1 48 SQIQLAKAIGIEQPSLVRTLDQLEEKGLI 76
                8899***********************98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
      HTH_36  35 lglskn...TvsraikeLeq 51 
                 +g+s++   + ++ i+ Le+
  EHU01067.1 116 SGISRDeinQMVTLIARLEK 135
                 56666633366777777775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.3e-05     0.032      29      58 ..      51      80 ..      41      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
                HHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 29 elaerldlskntlsyHLrvLeeagLvevvr 58
                +la+++++ + +l + L++Lee gL+++++
  EHU01067.1 51 QLAKAIGIEQPSLVRTLDQLEEKGLITRTT 80
                89*************************985 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00018      0.17      24      83 ..      35      90 ..      19     105 .. 0.81
   2 ?    2.9   0.1     0.084        80     125     152 ..     117     144 ..     112     145 .] 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
     DUF4423 24 pvirellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkdedgkyrqteksl 83
                ++++++ +l+++ ++  +lak+++  i +    ++l+ L++ gl++++      +  k +
  EHU01067.1 35 VTLHNIHQLPPE-QSQIQLAKAIG--IEQPSLVRTLDQLEEKGLITRTTC-AHDRRAKRI 90
                567788889999.88889******..*********************987.444444444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.084
     DUF4423 125 aiskedyekikkeirefrkkilaiaees 152
                 +is++++++ +  i+++ k+il++ +++
  EHU01067.1 117 GISRDEINQMVTLIARLEKNILELQNKE 144
                 89********************998876 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   1.8e+03      20      39 ..       8      27 ..       7      28 .. 0.78
   2 ?   12.3   0.0   0.00012      0.12      20      46 ..      51      77 ..      46      78 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
                HHHHHHTS-HHHHHHHHHHH CS
       HTH_5 20 elaeelglsqstvShHLkkL 39
                +l++ +++ ++ +++ Lk L
  EHU01067.1  8 DLSRLVRIWRALIDQRLKPL 27
                88888888888888888866 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00012
                HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 20 elaeelglsqstvShHLkkLreaGLVe 46
                +la+++g+ q+ + + L +L+e GL++
  EHU01067.1 51 QLAKAIGIEQPSLVRTLDQLEEKGLIT 77
                8************************96 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001     0.098      22      60 ..      41      80 ..      36      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
                   HSS--..-HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GG CS
  LexA_DNA_bind 22 tgypP..sireiaralglkSpsaveehLkaLerKGyierdp 60
                   ++ pP  s  ++a+a+g++ ps v   L  Le KG+i r+ 
     EHU01067.1 41 HQLPPeqSQIQLAKAIGIEQPSLV-RTLDQLEEKGLITRTT 80
                   5778833445669******88877.57**********9985 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.2e-05     0.049      13      83 ..      50     112 ..      39     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
  Replic_Relax  13 rqiarllfashratarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarllaaqraepeprskrd 83 
                    q+a+++  ++ + + r L +L+e+gl++r++   +++++     +  Lt++++ +++++++    +++rd
    EHU01067.1  50 IQLAKAIGIEQPS-LVRTLDQLEEKGLITRTTCAHDRRAK-----RIKLTQQAEPVIQQVEH--VIDITRD 112
                   5999999999999.****************6666344444.....799*****999944333..2334444 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.091        86      94     120 ..      33      58 ..      21      62 .. 0.84
   2 ?   12.1   0.3   0.00017      0.16      39      85 ..      50      90 ..      46     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.091
  GlnD_UR_UTase  94 qlladrqthrLpfdeeeqrrlaealgy 120
                    + ++ ++ h+Lp + + q +la+a+g+
     EHU01067.1  33 HWVTLHNIHQLPPE-QSQIQLAKAIGI 58 
                    6677788899*977.89********99 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
  GlnD_UR_UTase 39 vqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrf 85
                   +q++++i       + ++s++++l++l+e+gl+t+ ++++ r+a r 
     EHU01067.1 50 IQLAKAIG------IEQPSLVRTLDQLEEKGLITRTTCAHDRRAKRI 90
                   56777777......99********************99998888764 PP

>> RsbU_N  Phosphoserine phosphatase RsbU, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00025      0.24      21      59 ..      11      49 ..       3      53 .. 0.84
   2 ?   -1.7   0.1       3.5   3.3e+03      26      39 ..     110     123 ..      92     141 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00025
                HHHHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS-HHHH CS
      RsbU_N 21 eaeelsrellekgispeeivelHkevleelskdlpedvq 59
                    + r+l+ ++++p+e++++H   l ++ +  pe+ q
  EHU01067.1 11 RLVRIWRALIDQRLKPLELTQTHWVTLHNIHQLPPEQSQ 49
                55667799*******************999998777655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.5
                 HHHHHHTT--HHHH CS
      RsbU_N  26 srellekgispeei 39 
                 +r+ +  gis  ei
  EHU01067.1 110 TRDDILSGISRDEI 123
                 44444444444443 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00027      0.26      26      52 ..      50      76 ..      37      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
                    HHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekdGyv 52
                     +la++++++ +s   +l  Le++G++
      EHU01067.1 50 IQLAKAIGIEQPSLVRTLDQLEEKGLI 76
                    58***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1207.96
//
Query:       EHU01068.1  [L=155]
Description: outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-06   28.0  27.1    1.4e-06   28.0  27.1    1.7  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.019   15.3   0.1      0.085   13.2   0.0    1.9  2  DUF3221          Protein of unknown function (DUF3221)
       0.26   10.8   3.4       0.39   10.3   3.4    1.3  1  DUF533           Protein of unknown function (DUF533)
       0.33   11.1  21.1      0.045   13.9  16.8    1.8  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea
       0.81    9.7  29.7       0.43   10.6  26.1    2.3  2  Gly-zipper_Omp   Glycine zipper


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       2.5   8.9e+03      32      36 ..      10      14 ..       9      17 .. 0.37
   2 !   28.0  27.1   3.9e-10   1.4e-06       1      41 [.      62     102 ..      62     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.5
  Rick_17kDa_Anti 32 aaGav 36
                     + Ga+
       EHU01068.1 10 LTGAM 14
                     33333 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 3.9e-10
  Rick_17kDa_Anti   1 vGaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnai 41 
                      +Ga++GA++Gg +G+ iggg gr+l++++GA++G+vaG+ +
       EHU01068.1  62 IGAIGGAVLGGFLGNTIGGGAGRSLATAGGAVLGGVAGQGV 102
                      6****************999******************976 PP

>> DUF3221  Protein of unknown function (DUF3221)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.38   1.4e+03      43      59 ..      32      48 ..      19      54 .. 0.76
   2 ?   13.2   0.0   2.4e-05     0.085      28      64 ..     113     148 ..     102     155 .] 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.38
     DUF3221 43 idsdkvsnlevGqkVrV 59
                 + ++v++++ G+ V V
  EHU01068.1 32 SEAKQVQSVSYGTLVSV 48
                67889999999999988 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.4e-05
     DUF3221  28 eeeiekykgeaiwvlidsdkvsnlevGqkVrVwfdgk 64 
                 e ei k +g++i+v ++++  s+++vGq+V    dg+
  EHU01068.1 113 ELEIRKDDGNTIMV-VQKQAASRYSVGQRVALATDGS 148
                 33488889999999.***************9999976 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.4   0.00011      0.39       3      52 ..      65     109 ..      61     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
      DUF533   3 gggaaaggllglllGskkgrklgkkalklGglAalGglAykayqnwqanq 52 
                  gga++gg lg  +G++      ++ l+++g A+lGg+A + +q   ++ 
  EHU01068.1  65 IGGAVLGGFLGNTIGGGA-----GRSLATAGGAVLGGVAGQGVQGAMNKT 109
                 567777777777777777.....5556666689*******9999543332 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   4.4e+03      32      36 ..       9      13 ..       4      18 .. 0.48
   2 ?   13.9  16.8   1.3e-05     0.045      14      59 ..      52      99 ..      44     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
  Bacteriocin_IIc 32 alaGa 36
                     al+Ga
       EHU01068.1  9 ALTGA 13
                     33333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.3e-05
  Bacteriocin_IIc 14 kVeGG..kcaqgtvggivggalaGaatGaatlgilgaavGavvGavvG 59
                     k++GG  +++ g +gg+v+g+  G ++G+ ++  l++a+Gav+G+v+G
       EHU01068.1 52 KIQGGddSNIIGAIGGAVLGGFLGNTIGGGAGRSLATAGGAVLGGVAG 99
                     8******999999**********************************9 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       0.4   1.4e+03       7      15 ..       9      17 ..       6      27 .. 0.66
   2 ?   10.6  26.1   0.00012      0.43       2      44 ..      63     108 ..      62     110 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.4
  Gly-zipper_Omp  7 AaaGaliGg 15
                    A++Ga ++g
      EHU01068.1  9 ALTGAMLAG 17
                    667776666 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavg...grgtGaliGAavGaavGgliGaamdk 44 
                     Ga++GA++G+ +G+  g   gr   +++GA++G+++G ++  am k
      EHU01068.1  63 GAIGGAVLGGFLGNTIGggaGRSLATAGGAVLGGVAGQGVQGAMNK 108
                     6666666666666644434458899999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1161.64
//
Query:       EHU01069.1  [L=373]
Description: anhydro-N-acetylmuramic acid kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-169  563.1   0.8     3e-169  562.9   0.8    1.0  1  AnmK      Anhydro-N-acetylmuramic acid kinase
     0.0076   16.0   0.2      0.022   14.5   0.1    1.7  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> AnmK  Anhydro-N-acetylmuramic acid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.9   0.8  3.4e-173    3e-169       2     366 .]       5     367 ..       4     367 .. 0.99

  Alignments for each domain:
  == domain 1  score: 562.9 bits;  conditional E-value: 3.4e-173
                 EEEEEE--TT-SEEEEEEEEESS.SEEEEEEEEEE--HHHHHHHHHTSS--BSHHHHHHHHHHHHHHHHHHHHHHHHHHTT--GGGEEEEEE--EEEEE CS
        AnmK   2 lyiGlmsGtslDgvdivlvdleeakvellashlfpipedlreklldllqggaatlkalgeldqelgllfadavnellqkqelkaeeiraigshGqtvrh 100
                 +yiG+msGtslDgvd+vl++++e+ v++ as  +p+p+dlr+++l+++qg+a tl++lg+ld++lg+lfadav +l+q++ l+ +++ aig+hGqtv+h
  EHU01069.1   5 RYIGVMSGTSLDGVDVVLAAIDENMVAQQASYCHPMPPDLRQSILAICQGQAVTLSQLGQLDTRLGQLFADAVLTLMQREALEMSDVVAIGCHGQTVWH 103
                 8************************************************************************************************** PP

                 EGGG..TEEEEE--HHHHHHHHSS-EEE--HHHHHHTTS-S---HHHHHHHHHS-SSS-EEEEEESSEEEEEEE-TTS--EEEEEEESSHHHHHHHHHH CS
        AnmK 101 epegevpftlqlgdanliaektgitvvaDfRrrDvaaGGqGaPLvpafheallaaenearavLniGGianvsvlapnaevlgfDtGPgnaLlDawieke 199
                 ep++++p tlq+gd+n+i+++tg+tvv+DfRrrD+a+GGqGaPLvpafh+all +++e+r+vLniGGian+s+l+p+++v gfDtGPgn+LlDawi+++
  EHU01069.1 104 EPHSAAPNTLQIGDNNQIVAATGVTVVGDFRRRDMALGGQGAPLVPAFHQALLMDATERRMVLNIGGIANLSLLIPGQPVRGFDTGPGNMLLDAWIWRN 202
                 *************************************************************************************************** PP

                 HS-SS-GGGHHHHCS---HHHHHHHHTSCCHH--SS----TTTSSHHHHHHHHTTSTT-H..HHHHHHHHHHHHHHHHHHHHHH-TT--EEEEESGGGG CS
        AnmK 200 rgkayDkdgewaasGkvnkkLLaelladpyfalpaPkstGrelFnlawlekklakapeaalpeDvqatLveltavtiadallkaqadaerllvcGGGak 298
                 +gkayDkd++wa+sGkv ++LL+ ll +p+ a+  PkstGrelFnl wle++l+++p  a ++DvqatL e+tavtia++++  +  ++rllvcGGG++
  EHU01069.1 203 QGKAYDKDANWARSGKVSPALLEALLREPWLARVPPKSTGRELFNLGWLEQHLRHFPGIA-AQDVQATLNEFTAVTIAQQVQLNDG-CDRLLVCGGGSR 299
                 *********************************************************988.8******************987766.9*********** PP

                 -HHHHHHHHHHSTTSEEEEGGGGTS-GGGHHHHHHHHHHHHHHTT---S-HHHH--SS-----EEE-- CS
        AnmK 299 npvlmarlaallpevevestdelgldsdavealaFawLaartlnglPgnlpsvtGakkavlLGaiypa 366
                 np+lmarlaa+l+++ev++td++g+++d++ealaFawLa+rtl glPgnlp+vtGa++++++Gaiypa
  EHU01069.1 300 NPLLMARLAAHLAGTEVTTTDTVGINGDDMEALAFAWLAYRTLSGLPGNLPAVTGAREKSIIGAIYPA 367
                 ******************************************************************96 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.27   2.4e+03      14      58 ..      25      69 ..      14     135 .. 0.67
   2 !   14.5   0.1   2.4e-06     0.022     134     181 ..     272     320 ..     256     324 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.27
      FGGY_C 14 vgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnl 58
                + +++v ++ + ++p++++ ++   a+ +++av+ s ++ l   l
  EHU01069.1 25 IDENMVAQQASYCHPMPPDLRQSILAICQGQAVTLSQLGQLDTRL 69
                555555666666666666666666666666666666666665554 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.4e-06
      FGGY_C 134 qlrailealekdsgkpldrlavdGGgskndllm.qllAdilgvpVerpk 181
                  + a++ a + + +   drl+v+GGgs+n+llm +l+A + g+ V +++
  EHU01069.1 272 EFTAVTIAQQVQLNDGCDRLLVCGGGSRNPLLMaRLAAHLAGTEVTTTD 320
                 45555566666667779**********9999883555556668877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2900.69
//
Query:       EHU01070.1  [L=77]
Description: hypothetical protein CKS_3460 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-40  134.7   1.2    9.5e-40  134.5   1.2    1.0  1  DUF4060   Protein of unknown function (DUF4060)
  ------ inclusion threshold ------
      0.041   13.8   0.2      0.078   13.0   0.2    1.4  1  RecO_N    Recombination protein O N terminal
      0.056   13.8   0.0      0.057   13.7   0.0    1.2  1  DUF2575   Protein of unknown function (DUF2575)


Domain annotation for each model (and alignments):
>> DUF4060  Protein of unknown function (DUF4060)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   1.2   1.6e-43   9.5e-40       1      73 []       3      75 ..       3      75 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 1.6e-43
     DUF4060  1 liirgdksplhlvaadaAlaaHaekyGegrqkhptiYtvavrgkkvaVEVvtRresyVATvmvGvRkLtkLpg 73
                +iirgdk+p+h+vaa++Al+aH+++yGeg+++hp+iY++a+r+k+++VEV+tRre++VATv++GvRkLt+Lpg
  EHU01070.1  3 QIIRGDKEPVHIVAASRALEAHMSRYGEGNKYHPVIYSIAYRSKYYQVEVITRRETIVATVITGVRKLTHLPG 75
                7***********************************************************************8 PP

>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.3e-05     0.078      10      42 ..      37      69 ..      35      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
                EEEEEEETTSEEEEEEEETT.EEEEEEEET-.. CS
      RecO_N 10 VLksrkygEsdlivtlfTrehGkvsalargark 42
                V++s++y+ ++  v++ Tr + +v+ ++ g+rk
  EHU01070.1 37 VIYSIAYRSKYYQVEVITRRETIVATVITGVRK 69
                899****************************98 PP

>> DUF2575  Protein of unknown function (DUF2575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.5e-06     0.057      26      61 ..      27      62 ..       2      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.5e-06
     DUF2575 26 kialsGqflgvvcamamksifflisvlnrrltltav 61
                +   + ++ +v+  +a +s+++ ++v  rr t+ a 
  EHU01070.1 27 RYGEGNKYHPVIYSIAYRSKYYQVEVITRRETIVAT 62
                55667899**********************999763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 634.79
//
Query:       EHU01071.1  [L=403]
Description: putative FAD-binding phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-48  164.0   0.1    5.6e-48  163.5   0.1    1.2  1  EAL       EAL domain
    6.1e-24   84.0   0.0    1.2e-23   83.1   0.0    1.5  1  BLUF      Sensors of blue-light using FAD


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.1   6.2e-52   5.6e-48       7     237 ..     165     388 ..     159     389 .. 0.89

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 6.2e-52
                 HC.CTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--C.HHCC-CCHH CS
         EAL   7 al.enkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlsp.asladeefl 103
                 al  ++ + +++Q ++d   +k+v leallr    +     ++ f +l  ++ + ++l     + a++++++l      +i ls+nl p + +  ++++
  EHU01071.1 165 ALiNHEGVNFAFQAIIDPLARKIVSLEALLRGSQGET---QQDYFSRLPPENIYRDDLQ--SKRIAFAQAKALG---IDGIMLSVNLLPmSLVLVPDAV 255
                 5535567899*********************977655...4677777777755555555..5555555777763...7899********88888999** PP

                 HHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHC CS
         EAL 104 eelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialak 202
                   l+ ++ ++ + p+++v+e+te+e+++r ++ + ++l++L+a+Gi++alddfg+gy+ ls+l+ ++pd iK+drs+++++++++ +qa+v a++a+++
  EHU01071.1 256 TFLLTEIYAHDLVPEQIVVEFTENEIISRPDDFA-AALKQLKAAGISVALDDFGAGYAGLSLLTQIQPDKIKIDRSIISNVHKSGPKQAIVHAILACCS 353
                 ****99*788888888*****************9.**************************************************************** PP

                 CCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT-- CS
         EAL 203 elgikvvaegVeteeqlealrelgcdlvQGyllsk 237
                 +l+i+v+aeg+e +e++++l+++g+  +QG+l+s 
  EHU01071.1 354 SLEITVIAEGIEQPEEWMWLEAAGVSQFQGFLFSW 388
                 *********************************96 PP

>> BLUF  Sensors of blue-light using FAD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   1.3e-27   1.2e-23       1      91 [.       2      92 ..       2      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 1.3e-27
                EEEEEEEEEE.TTS-HHHHHHHHHHHHHHHHHHTEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHT-TTEEEEEEEEEEEESS-SSTTCSS CS
        BLUF  1 LvrliYvSkaaeelseeeleeileesrenNkelgitGvLlydegvflQvLEGeeeaveelyerIkkDpRhkdvevleeeeieersFskwsm 91
                L ++iY+S+ a+++  + le +++++++ N+++++tG+Ll+++++f+QvLEG+e++v ++yerI++D+ h++++ l+++ + +r+F ++ m
  EHU01071.1  2 LSTIIYRSHIADHVPLKMLEGLVAKANKINESSSVTGILLFNGTHFFQVLEGPENDVLAVYERICRDTSHHNIVELMRDYAPSRRFGNVGM 92
                6789****99*****************************************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3274.10
//
Query:       EHU01072.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01072.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01072.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01072.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01072.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01072.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01072.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01072.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01072.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01072.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01072.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01072.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01072.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01072.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01072.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01072.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01072.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01072.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2369.26
//
Query:       EHU01073.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-99  332.1   3.5    1.6e-98  329.7   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.03   12.9   6.9      0.056   12.0   6.9    1.5  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.2    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        7.1    7.3   8.7        7.7    7.2   1.0    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  329.7   0.0  1.9e-101   1.6e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU01073.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 329.7 bits;  conditional E-value: 1.9e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01073.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01073.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01073.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01073.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01073.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01073.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01073.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01073.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01073.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01073.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01073.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01073.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01073.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01073.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01073.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01073.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01073.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01073.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01073.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01073.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01073.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01073.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01073.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01073.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01073.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01073.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01073.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01073.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01073.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01073.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                     1022  (0.0570026); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 3704.86
//
Query:       EHU01074.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01074.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 915.88
//
Query:       EHU01075.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01075.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01075.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01075.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01075.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 801.25
//
Query:       EHU01076.1  [L=72]
Description: hypothetical protein CKS_4160 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 602.64
//
Query:       EHU01077.1  [L=88]
Description: hypothetical protein CKS_4161 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-18   66.0   2.7    2.4e-18   65.7   2.7    1.1  1  YrhK      YrhK-like protein


Domain annotation for each model (and alignments):
>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   2.7   1.3e-22   2.4e-18       1      58 [.      19      72 ..      19      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.3e-22
        YrhK  1 nryeaislandiigsllFlvGSilflpnsefwkwqiagvwlFliGSilflirpvirlv 58
                +ry+a+ ++nd++++++Fl GSilf+    f+++ + g+wlF++GS+++l+rp i l+
  EHU01077.1 19 RRYRALGALNDLFIAVWFLTGSILFF----FDSLMTGGTWLFVVGSLQLLLRPAITLA 72
                69************************....*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 754.88
//
Query:       EHU01078.1  [L=39]
Description: hypothetical protein CKS_4162 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      112  (0.00624686); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 358.71
//
Query:       EHU01079.1  [L=65]
Description: hypothetical protein CKS_4163 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0028   17.2   0.3     0.0032   17.0   0.3    1.0  1  DUF1129   Protein of unknown function (DUF1129)
  ------ inclusion threshold ------
       0.34   10.7   1.1        2.4    8.0   0.2    1.9  2  KdpC      K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.3   3.6e-07    0.0032      90     142 ..      12      63 ..       8      65 .] 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.6e-07
     DUF1129  90 alfallfgilalfskkkqtas.iGlitlllvalvgGlamvlvyrlltrekkkkk 142
                  +f++l g++++f + +++ + iGl   +l++l +Gl++  + +++ r+  + +
  EHU01079.1  12 LIFSVLWGVFMWFMSWQAQGKeIGL--AVLMSLYAGLLYQALITMVARYRARRQ 63 
                 59************98888885665..67899**************99744443 PP

>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0071        64      13      40 ..       7      34 ..       1      37 [. 0.77
   2 ?    8.0   0.2   0.00027       2.4       5      32 ..      34      61 ..      31      65 .] 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0071
                HHHHTHHHHHHHHHHHHH-HHHHTT-EE CS
        KdpC 13 vllgliYplavtgiaqllfpeqAnGsli 40
                 + g +   +++g+  +++++qA+G+ i
  EHU01079.1  7 FVRGWLIFSVLWGVFMWFMSWQAQGKEI 34
                5667777778899999999999999866 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHHTHHHHHHHHHHHHH-H CS
        KdpC  5 lrlllvltvllgliYplavtgiaqllfp 32
                + l++++ +  gl+Y +++t++a+   +
  EHU01079.1 34 IGLAVLMSLYAGLLYQALITMVARYRAR 61
                66889999***************98554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 516.74
//
Query:       EHU01080.1  [L=501]
Description: sulfate permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-38  131.3  37.3    6.9e-23   81.0   8.5    2.5  2  Sulfate_transp  Sulfate permease family
      5e-07   30.1  44.3    0.00019   21.8   4.7    4.2  4  MFS_MOT1        Molybdate transporter of MFS superfamily
    1.8e-05   24.3   0.0    3.3e-05   23.5   0.0    1.3  1  STAS            STAS domain
     0.0079   16.2   0.6     0.0079   16.2   0.6    3.1  3  QCR10           Ubiquinol-cytochrome-c reductase complex subu
  ------ inclusion threshold ------
      0.099   12.6   0.5       0.56   10.2   0.5    2.3  1  DUF543          Domain of unknown function (DUF543)
       0.32    9.8  11.1       0.12   11.2   0.8    2.4  2  HCO3_cotransp   HCO3- transporter family


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  19.0   2.7e-19   8.2e-16       3     138 ..      31     159 ..      29     173 .. 0.95
   2 !   81.0   8.5   2.3e-26   6.9e-23     178     378 ..     176     371 ..     158     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.7e-19
  Sulfate_transp   3 gDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviqvl 97 
                      + +aG+++al +iP  ++++++ag++p + L++svv  l  +l+G+ + ++  + + ++l++g ++          g++  + ++++aG+iq+l
      EHU01080.1  31 RECLAGVITALALIPEVISFSVIAGVDPKVSLVASVVLCLTLSLLGGRPAMVTAAAGSVALVIGPMVHAH-------GVAYILPAVVMAGIIQIL 118
                     5678****************************************************************77.......999999************ PP

  Sulfate_transp  98 lGllRLgflveflseavlsGfiaGaaivillsqikvllgle 138
                     +G+  + + +++++++v++Gf+ + ++ i+++q+ ++ g +
      EHU01080.1 119 FGVTGMSRAMRYIPRSVMIGFVNALGVLIFFAQVPHVWGQS 159
                     ***********************************999875 PP

  == domain 2  score: 81.0 bits;  conditional E-value: 2.3e-26
  Sulfate_transp 178 tkellkklkkllvipapaelvavivatlvsaifelkreagvkiv...geipsglpelslp..kvdwsllsallpdalaialvglleaiavsksld 267
                               +++ ++p +lva+++ t v++++     + v +v   g ++ glp +      ++w++ls + p+al++a+vgl+e+++++k +d
      EHU01080.1 176 LP--------RVLKSVPSPLVAIVAVTAVTLAM----GYRVPTVgdeGPMSAGLPDFTALtvPLNWQTLSIVWPTALSVAFVGLMESLLTAKLVD 258
                     33........367899*********99999999....233333322266787766665443449******************************* PP

  Sulfate_transp 268 kkkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaG.aktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelk 361
                       +++  +  +E  +lG+ Nil+++ gg++  + + ++ vn++ G a++++s++  alv+ll++  l+ +++ iP++vLa+i+++++++  v+++
      EHU01080.1 259 DLTDTPSSKRRESWGLGIGNILAGFYGGIAGCAMIGQTIVNVELGkARSRVSTVAAALVLLLLVTGLSHIMAQIPMVVLAGIMMIVAVK-TVNWH 352
                     *******************************************9989***********************************9999988.78888 PP

  Sulfate_transp 362 el..kklwklskldflill 378
                     +l    l ++  +++l++l
      EHU01080.1 353 SLqpATLKRMPWSETLVML 371
                     8854455667777777766 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  13.9   1.3e-06     0.004       9     109 ..      40     145 ..      32     147 .. 0.83
   2 !    8.1   2.8    0.0011       3.4      65     106 ..     153     194 ..     144     198 .. 0.83
   3 !   21.8   4.7   6.2e-08   0.00019      28     109 ..     266     346 ..     214     348 .. 0.82
   4 ?   -0.8   1.0      0.66     2e+03      81     104 ..     373     396 ..     362     408 .. 0.48

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.3e-06
    MFS_MOT1   9 dlglTllnlvialaalaslsltalllsvGlmnlltglfggvPmc..........hgAgglaaqyrf.......gartgaagillGlvllllgltgller 90 
                  l   l++ vi+ +++a+++++  l+ + ++ l+++l+gg P             +                  a +  a+++ G++ +l+g+tg ++r
  EHU01080.1  40 AL--ALIPEVISFSVIAGVDPKVSLVASVVLCLTLSLLGGRPAMvtaaagsvalVI---------GpmvhahgVAYILPAVVMAGIIQILFGVTG-MSR 126
                 44..49************************************88865533333333.........223344559********************9.999 PP

    MFS_MOT1  91 llrliPksvlgglllgaGl 109
                  +r+iP+sv+ g + ++G+
  EHU01080.1 127 AMRYIPRSVMIGFVNALGV 145
                 9************999997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
    MFS_MOT1  65 gartgaagillGlvllllgltgllerllrliPksvlgglllg 106
                 ++  g + ++ +l+ ++l++++ll r+l+ +P +++ ++ + 
  EHU01080.1 153 PHVWGQSPLVWALFAVTLAIVLLLPRVLKSVPSPLVAIVAVT 194
                 56678899***************************9877654 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 6.2e-08
    MFS_MOT1  28 sltalllsvGlmnlltglfggvPmchgAgglaaqyrf.gartgaagillGlvllllgltgllerllrliPksvlgglllgaGl 109
                 s ++ ++ +G+ n+l+g++gg+  c++ g  + +++  +ar+ ++ +  +lvllll +t  l+++++ iP+ vl g+++++++
  EHU01080.1 266 SKRRESWGLGIGNILAGFYGGIAGCAMIGQTIVNVELgKARSRVSTVAAALVLLLL-VT-GLSHIMAQIPMVVLAGIMMIVAV 346
                 456678899****************9999999997777888888888777666665.44.489****************9987 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.66
    MFS_MOT1  81 llgltgllerllrliPksvlggll 104
                 ++g+t l ++l+  +   v+ +++
  EHU01080.1 373 TVGITVLTSNLALGVLAGVVVAMM 396
                 444444333332222222222222 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.1e-08   3.3e-05      13      88 ..     421     485 ..     411     492 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.1e-08
                 EEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES- CS
        STAS  13 lrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvni 88 
                 + ++gp++fa+++++ e+ + a +            ks+ +dl++ + +D s v+aL  i  +++r+g +v + ++
  EHU01080.1 421 YDVRGPLFFASSNDLFEHFDYAHDP-----------KSVTIDLTHAQIWDASTVAALDGIEYRYQRHGASVTIEGL 485
                 6789**************9988886...........58*********************************99876 PP

>> QCR10  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   2.6e-06    0.0079       5      37 ..     123     155 ..     119     158 .. 0.92
   2 ?   -2.7   0.4       2.2   6.6e+03      16      27 ..     281     292 ..     278     293 .. 0.82
   3 ?   -3.4   0.2       3.5     1e+04      19      29 ..     385     395 ..     376     401 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
       QCR10   5 tlktltrygptlalfGgaagvavlfftsgvPrv 37 
                  +++++ry+p+ ++ G++ + +vl+f+ +vP v
  EHU01080.1 123 GMSRAMRYIPRSVMIGFVNALGVLIFFAQVPHV 155
                 57899**************************87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
       QCR10  16 lalfGgaagvav 27 
                 ++++Gg ag+a 
  EHU01080.1 281 AGFYGGIAGCAM 292
                 7899****9986 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.5
       QCR10  19 fGgaagvavlf 29 
                  G+ agv v++
  EHU01080.1 385 LGVLAGVVVAM 395
                 46666655543 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   0.00019      0.56      29      55 ..     380     406 ..     360     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
      DUF543  29 lvkvglgllvGvvasvllfrrRaapva 55 
                   + +lg+l+Gvv++++lf rR a v+
  EHU01080.1 380 TSNLALGVLAGVVVAMMLFARRVAHVI 406
                 56789*****************99885 PP

>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   3.6     0.016        47      67     154 ..      59     140 ..      28     156 .. 0.76
   2 ?   11.2   0.8   4.1e-05      0.12     428     470 ..     307     350 ..     295     361 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.016
  HCO3_cotransp  67 seslvsaaisgilfalfagqpllilgstgPllvfekilykfckelgldylslrvwiglwlalillilvatdasalvkyitrfteeifa 154
                    + slv+ ++  ++ +l++g+p ++  + g +++   ++  + + +g+ y+   v+      +i +++ +t +s  ++yi r+    f 
     EHU01080.1  59 KVSLVASVVLCLTLSLLGGRPAMVTAAAGSVAL---VIGPMVHAHGVAYILPAVV---MAGIIQILFGVTGMSRAMRYIPRSVMIGFV 140
                    45789999999*******************987...6778889999999866554...35678888899999999***9998766654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.1e-05
  HCO3_cotransp 428 qRvtgllvfiliglsvl.ltpvlklIPmpVLyGvFLYmgvtsLk 470
                     Rv+++++++++ l v  l ++++ IPm VL G+ + ++v  ++
     EHU01080.1 307 SRVSTVAAALVLLLLVTgLSHIMAQIPMVVLAGIMMIVAVKTVN 350
                    6999888776655555549999****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.39
# Mc/sec: 3881.02
//
Query:       EHU01081.1  [L=86]
Description: hypothetical protein CKS_4165 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   95.5   0.6    1.6e-27   95.1   0.6    1.2  1  YmgB      Biofilm development protein YmgB/AriR


Domain annotation for each model (and alignments):
>> YmgB  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.6   8.9e-32   1.6e-27       1      59 []      25      83 ..      25      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 8.9e-32
                HHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHH-X CS
        YmgB  1 sEtevLgaiireilasggkvtnKaIIlkLiekLEsesdvvqldvyRqaLElVVgkTpDD 59
                s++e+Lg +++eil+sg+ v+nKaII+kLi++LE e+d v+ldvyR++LE+VV+kTpDD
  EHU01081.1 25 SDMEILGLVVAEILQSGMAVNNKAIISKLIHRLELERDEVSLDVYRHLLEMVVYKTPDD 83
                689*******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 641.81
//
Query:       EHU01082.1  [L=281]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-23   81.8   5.4    8.4e-23   80.8   5.4    1.6  1  AraC_binding   AraC-like ligand binding domain
    1.2e-19   70.3   2.2    4.6e-19   68.5   0.4    2.6  3  HTH_18         Helix-turn-helix domain
    2.7e-11   43.2   0.1    0.00044   20.3   0.0    3.3  3  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
     0.0062   16.9   3.0        3.8    7.9   0.0    2.9  3  HTH_31         Helix-turn-helix domain
  ------ inclusion threshold ------
       0.15   11.7   0.1       0.23   11.1   0.1    1.3  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   5.4   2.3e-26   8.4e-23       3      83 ..      18      98 ..      16     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 2.3e-26
                  EEEEEETTSTT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGG CS
  AraC_binding  3 diegieagypdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegeller 83
                  +ie+i+a++++h+++ph+hd y+i+++++G+++++ ++++++++pG++f l p+e+Hd+ + + +g++yr+ly+++  l++
    EHU01082.1 18 GIEAIRAHFTGHAYDPHWHDSYLIGVTEQGVQQFHSRQKRHRSRPGTVFMLEPEELHDGDAIDAQGFTYRMLYLSPHHLHQ 98
                  799*************************************************************************77765 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.65   2.3e+03       4      16 ..      88     100 ..      86     102 .. 0.83
   2 ?   -0.5   0.0      0.44   1.6e+03      37      62 ..     133     158 ..     127     161 .. 0.70
   3 !   68.5   0.4   1.3e-22   4.6e-19       1      80 [.     194     271 ..     194     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.65
                 HHT--HHHHHHHH CS
      HTH_18   4 algvsrrtLqrlf 16 
                 +l +s+ +L+++f
  EHU01082.1  88 MLYLSPHHLHQQF 100
                 67899*****999 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.44
                 HHHHHSSS---HHHHHHHTT-S-HHH CS
      HTH_18  37 rrlLlentglsvaeiAlalGFsdlsr 62 
                  ++L +n+ + ++++Al+  F +l++
  EHU01082.1 133 FDALWHNHPQLIKDAALERLFRHLRH 158
                 55666666677788888888888777 PP

  == domain 3  score: 68.5 bits;  conditional E-value: 1.3e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a+al+v r +L+rlf+++ gl+p+++l + Rl +Arr+L+   g+  ae+A++lGF+d+s++ r+f+++ ++tP++y++
  EHU01082.1 194 MAQALNVDRFRLSRLFQQQWGLPPHAWLVQWRLSQARRRLA--MGHLPAEVAADLGFADQSHLGRWFKRACQLTPARYQQ 271
                 599*************************************6..69999*****************************975 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.18   6.5e+02      18      29 ..      89     100 ..      87     101 .. 0.85
   2 !   18.1   0.0   5.8e-07    0.0021      11      41 ..     191     221 ..     191     221 .. 0.94
   3 !   20.3   0.0   1.2e-07   0.00044      12      42 .]     240     271 ..     240     271 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.18
                 TTSSHHHHHHHH CS
    HTH_AraC  18 lgfSrsyFsrlF 29 
                 l++S+ +++++F
  EHU01082.1  89 LYLSPHHLHQQF 100
                 677*******99 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.8e-07
                 HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC  11 iediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 i+++A++l+++r+ +srlF+++ G  P++++
  EHU01082.1 191 IAQMAQALNVDRFRLSRLFQQQWGLPPHAWL 221
                 89********************999999986 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 1.2e-07
                 HHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  12 ediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +++A+ lgf ++s++ r Fk++++ tP  y +
  EHU01082.1 240 AEVAADLGFaDQSHLGRWFKRACQLTPARYQQ 271
                 58**************************9975 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   3.8e+03      44      55 ..     146     157 ..     141     163 .. 0.75
   2 !    7.9   0.0    0.0011       3.8      18      47 ..     192     221 ..     190     223 .. 0.87
   3 !    7.8   0.5    0.0012       4.3       8      52 ..     230     274 ..     224     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
      HTH_31  44 pavlealaralg 55 
                  a+le+l r l+
  EHU01082.1 146 DAALERLFRHLR 157
                 678888888776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
      HTH_31  18 eevAerlgvsestlsrlEqGrrgrpspavl 47 
                 +++A++l+v + +lsrl q ++g+p+ a+l
  EHU01082.1 192 AQMAQALNVDRFRLSRLFQQQWGLPPHAWL 221
                 799********************7765554 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0012
      HTH_31   8 alReraGLsqeevAerlgv.sestlsrlEqGrrgrpspavlealar 52 
                 ++R + G   +evA+ lg+  +s+l+r+   +++  +pa   +l++
  EHU01082.1 230 RRRLAMGHLPAEVAADLGFaDQSHLGRWFKRACQ-LTPARYQQLCT 274
                 3444559999999*****77*************6.***99999985 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.5e-05      0.23     144     189 ..      18      71 ..       5     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.5e-05
                    TBCCGBSSCSEEEESSSSSEE.........EEEESS...STTCSSB--TTBEEEEEEE CS
  Peptidase_M24 144 glakffphglGHgvGlevhde.........gpsvsr...esndgrkleeGmvftiEpg 189
                    g+++   h++GH      hd+         +    +    ++++++ ++G vf +Ep+
     EHU01082.1  18 GIEAIRAHFTGHAYDPHWHDSyligvteqgV----QqfhSRQKRHRSRPGTVFMLEPE 71 
                    6777789************996666555443....044323468999**********4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2405.00
//
Query:       EHU01083.1  [L=142]
Description: MarR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.1   0.2    4.1e-09   36.2   0.1    1.9  2  MarR      MarR family
    1.5e-09   37.6   0.2      3e-09   36.6   0.2    1.5  1  MarR_2    MarR family
    2.8e-09   37.3   0.1    5.4e-09   36.4   0.1    1.5  1  HTH_27    Winged helix DNA-binding domain
     0.0037   17.0   0.2     0.0037   17.0   0.2    1.9  2  HTH_IclR  IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.034   14.1   0.0    1.5  1  PadR      Transcriptional regulator PadR-like family
      0.079   13.1   0.0       0.12   12.5   0.0    1.3  1  HTH_34    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.4e-12   4.1e-09       3      58 ..      33      89 ..      31      89 .. 0.89
   2 ?   -1.0   0.0      0.59   1.8e+03      17      37 ..     119     139 ..     116     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.4e-12
                HHHHHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  3 ltqfviLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                 + ++++ +++++++ l+++eLa  +g++ +++  ++drL+k++l++R +  eDrR+
  EHU01083.1 33 TSSWMAIGLIASEPQrLTQTELAQLMGLEDASMVPLVDRLVKQDLLSRVQPAEDRRK 89
                5667777777777777****************************************6 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.59
                 TEEHHHHHHHHTS-HHHHHHH CS
        MarR  17 plsvseLakklgvskstvtrv 37 
                 ++  +e+a    v ++ +tr+
  EHU01083.1 119 DIDPQEIALVERVLQTLLTRM 139
                 677788888888888888886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.2     1e-12     3e-09       1      61 [.      29      88 ..      29      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1e-12
                TT--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  1 lgltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                +gl+ + +++++ ++ +p r lt++ela+ +gl+ +++  +++rLv++ L+ r+   eD+R
  EHU01083.1 29 SGLSTSSWMAIGLIASEPQR-LTQTELAQLMGLEDASMVPLVDRLVKQDLLSRVQPAEDRR 88
                6999*************986.*********************************999***9 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.8e-12   5.4e-09       2      68 .]      32      98 ..      31      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.8e-12
      HTH_27  2 trqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                +++ ++ + li+ +  r ++++l++ + +ed++++  +++L++++L+ r + ++drr +++ lT+kG
  EHU01083.1 32 STSSWMAIGLIASEPQRLTQTELAQLMGLEDASMVPLVDRLVKQDLLSRVQPAEDRRKRHLVLTEKG 98
                66778888888878888999**********************************************9 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.3e-06    0.0037      10      50 ..      40      80 ..      37      82 .. 0.93
   2 ?   -1.9   0.3         1   3.1e+03      36      43 ..     129     136 ..     127     138 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.3e-06
                CT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 10 dalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                 ++a++pq+lt +elA+  gl  ++   l+  Lv++ ++ +
  EHU01083.1 40 GLIASEPQRLTQTELAQLMGLEDASMVPLVDRLVKQDLLSR 80
                689********************************999986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                 HHHHHHHH CS
    HTH_IclR  36 hRlLqtLv 43 
                  R LqtL 
  EHU01083.1 129 ERVLQTLL 136
                 58899985 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.034      26      74 ..      57     103 ..      47     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                 -CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  26 llelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 l+ l+++s  p+ +rL k++l+++ +    e++++++  lT++G++++a
  EHU01083.1  57 LMGLEDASMVPLVDRLVKQDLLSRVQPA--EDRRKRHLVLTEKGNEAFA 103
                 4557888899************988654..7999999********9987 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.1e-05      0.12      14      74 ..      48     107 ..      38     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.1e-05
      HTH_34  14 eadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkkyvk 74 
                 + + +el + +++ d+ +   ++ L k++ +++    +++ ++ +l +T++G eaf+k++ 
  EHU01083.1  48 RLTQTELAQLMGLEDASMVPLVDRLVKQDLLSRVQPAEDR-RKRHLVLTEKGNEAFAKVKT 107
                 5677899999********************9999999998.777888*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1138.25
//
Query:       EHU01084.1  [L=559]
Description: putative permease of the major facilitator superfamily [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-14   52.0  40.8    4.9e-14   52.0  40.8    1.5  2  MFS_1         Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.035   13.9   0.0        3.4    7.4   0.0    2.4  2  Phage_T4_Ndd  T4-like phage nuclear disruption protein (Ndd)
       0.14   12.3   1.0       0.45   10.7   0.0    2.3  2  Pico_P2B      Picornavirus 2B protein
       0.19   12.0   2.5        1.3    9.3   0.6    3.0  2  DUF4148       Domain of unknown function (DUF4148)
          1    9.5   3.5        1.9    8.7   0.4    2.7  2  DUF872        Eukaryotic protein of unknown function (DUF872)
        3.3    7.9  12.7        4.4    7.5   3.6    2.9  2  DUF4381       Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0  40.8   1.6e-17   4.9e-14       3     352 ..      43     436 ..      41     437 .. 0.83
   2 ?   -2.6   0.0      0.65     2e+03     154     173 ..     512     530 ..     491     545 .. 0.58

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.6e-17
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 l+ +  al+ ++++++l+  l+ ++ + + ei +l ++y  g +  +l+l  + + fG r +  + l+l++l +++ lf ++     +++r   G+ ++
  EHU01084.1  43 LISLTGALSNALVTANLT-NLQGTFAAYANEIAWLPAVYVMGNISINLLLVKFRQQFGLRVFTEAFLVLYVLVAFFHLF-ANDLsSAIIVRTAHGMVSA 139
                 556677888899999999.9******************************************9**********777778.566669************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 al ++g+++  + +p ++r +a+ +  ++++l++ l+ l+++ l+++  Wr+++++  +++l+a  l+++l++  pp  + k+ ++             
  EHU01084.1 140 ALSSLGIYYQIQAWPARHRLKALVIGLTASQLAIPLARLFSSELLQLDEWRGLYLFELGLALIA--LGAVLVVKLPPGDRIKAFEKMDfltfillapgm 236
                 *********************************************9999***************..87788888888877777777779********** PP

       MFS_1 189 ............kgtgpaplvp..............awkallkdpvl...w....illialllfffgfsg..lltllpl....ylqevlgls.glllag 247
                             ++++ +p++               ++++ +++p +   w    + ++ l ++++++ +  + +   +    +  ++ gl     + g
  EHU01084.1 237 allcgvlslgriEWWFSTPWLGicsalalvlivsafVIEHNRRNPLIntrWlssgM-IVRLGIVMIMIRIvlAEQN--TgavgF-LQQIGLQnD-QMQG 330
                 ************99999999999999999999999999999999988877777642.2222222233333233333..233445.777888864.6777 PP

       MFS_1 248 lllallalvgailallagrls.drlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfv..fpsllalasdlappeeagtasglfnt 343
                   lal+ ++g+++++ a++l  + +   ++++ +l+++++a+l+ a  ++ + a  ++l+ +l+Gfg++f+   ++l+ + s ++ p++  + + lf++
  EHU01084.1 331 --LALAIMAGVVAGIAASALTiKPTHLNWPIVASLVVMIIASLMDAQSSPVTRANNMYLSQFLLGFGSAFFmaPAMLMGIGSVVTQPKNLVSFVVLFGM 427
                 ..677777777778899999966688888**********************888888888888888777663355555666666688899999999*** PP

       MFS_1 344 agslggalg 352
                  ++lgg++g
  EHU01084.1 428 SQNLGGLIG 436
                 *******99 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.65
       MFS_1 154 fyilaivsllafvlfllllp 173
                 +++ a ++l+  ++++l+ +
  EHU01084.1 512 YLLTATLALVT-LMWVLWRL 530
                 33333333333.23333333 PP

>> Phage_T4_Ndd  T4-like phage nuclear disruption protein (Ndd)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0012       3.4      82     137 ..     133     189 ..     123     198 .. 0.82
   2 ?    3.8   0.0     0.016        47      52     106 ..     461     517 ..     448     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
  Phage_T4_Ndd  82 rrsqlartiatnnveydviylsak.kmkplttgygkgqlalaftrnhsseyqtleem 137
                       ++ ++++  + y++   +a+ ++k l  g    qla+ ++r  sse   l+e 
    EHU01084.1 133 AHGMVSAALSSLGIYYQIQAWPARhRLKALVIGLTASQLAIPLARLFSSELLQLDEW 189
                   555566677777889999888885379***********************9999986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.016
  Phage_T4_Ndd  52 fsnpcvaarf..yvgrqrskqgldavlshirqrrsqlartiatnnveydviylsakk 106
                   + +p v+ r+  y g   s+ g +a+ls     + q   t+ +n + y+  yl +  
    EHU01084.1 461 LLDPNVSDRLtqYGGLFSSQIGDSALLSAQSTSQLQSVATLQANVLAYNDTYLLTAT 517
                   457888888655889999999*******98888888899*********999986655 PP

>> Pico_P2B  Picornavirus 2B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       1.2   3.7e+03      34      56 ..     345     367 ..     309     380 .. 0.57
   2 ?   10.7   0.0   0.00015      0.45      21      93 ..     465     542 ..     455     548 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
    Pico_P2B  34 tskitekllknllkivsalviiv 56 
                 +s +t k  +    iv++lv+++
  EHU01084.1 345 ASALTIKPTHLNWPIVASLVVMI 367
                 34444444444445677766665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00015
    Pico_P2B  21 qisdkikelvnlvtskitekll.....knllkivsalviivrnsedtttvlatlallgcdaspwrflkkklcdvlels 93 
                 ++sd++++   l +s+i++  l        l+ v++l   v  ++dt  + atlal+      wr  +++  d+ +  
  EHU01084.1 465 NVSDRLTQYGGLFSSQIGDSALlsaqsTSQLQSVATLQANVLAYNDTYLLTATLALVTLMWVLWRLTRRRYLDWRQAK 542
                 5899999999999999998765233223468889999999999****************************9998865 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.23   6.9e+02       7      22 ..     259     275 ..     257     308 .. 0.87
   2 ?    9.3   0.6   0.00043       1.3       8      31 ..     336     382 ..     328     384 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.23
     DUF4148   7 aaalaaavaaaaala.a 22 
                 +++++a+v++++a+  +
  EHU01084.1 259 ICSALALVLIVSAFViE 275
                 68899999999999763 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00043
     DUF4148   8 aalaaavaaaaala.......................ahskspkTRA 31 
                 +a ++a  aa+al+                       + ++sp+TRA
  EHU01084.1 336 MAGVVAGIAASALTikpthlnwpivaslvvmiiaslmDAQSSPVTRA 382
                 33334445555555888888888888888888989998899*****9 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4   0.00063       1.9      50      90 ..     192     235 ..     189     241 .. 0.82
   2 ?   -0.1   0.2      0.33   9.8e+02      37      67 ..     281     308 ..     260     320 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00063
      DUF872  50 llLlllGlvLlllgvvilvepseGvssavf...lvlGlllfiPG 90 
                 l L  lGl+L++lg+v++v+  +G++ ++f    +l ++l+ PG
  EHU01084.1 192 LYLFELGLALIALGAVLVVKLPPGDRIKAFekmDFLTFILLAPG 235
                 57889*************************55434555555677 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.33
      DUF872  37 PkvkknrkvvlaallLlllGlvLlllgvvil 67 
                 P+++  +   l + +++ lG+v++++ +v++
  EHU01084.1 281 PLINTRW---LSSGMIVRLGIVMIMIRIVLA 308
                 3333333...345566666666666666554 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.3    0.0093        28      12      45 ..     248     280 ..     243     290 .. 0.66
   2 ?    7.5   3.6    0.0015       4.4      24      59 ..     513     549 ..     502     559 .] 0.70

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0093
     DUF4381  12 vswwPpapGwwlllaalllllllvlalwllrrrk 45 
                 ++ww  +p+  ++  al+l+l++ +++  + rr+
  EHU01084.1 248 IEWWFSTPWLGICS-ALALVLIVSAFVIEHNRRN 280
                 79******766665.5444455555555554554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0015
     DUF4381  24 llaalllllllvlalwllrrrkrn.rreAlreLaalr 59 
                 ll+a l+l+ l+++lw+l rr+    r+A   La+ r
  EHU01084.1 513 LLTATLALVTLMWVLWRLTRRRYLdWRQAKFHLAEQR 549
                 4557788999999999999888768777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.35
# Mc/sec: 4794.15
//
Query:       EHU01085.1  [L=364]
Description: HlyD family secretion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-16   58.6  13.0    1.2e-14   54.1  10.8    2.6  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    4.4e-13   48.8   1.0    4.4e-13   48.8   1.0    4.5  5  Biotin_lipoyl_2  Biotin-lipoyl like
      2e-11   44.5  13.0      3e-09   37.5   0.3    3.9  4  HlyD_3           HlyD family secretion protein
    1.6e-10   40.7   1.4    2.2e-10   40.3   1.4    1.3  1  HlyD             HlyD membrane-fusion protein of T1SS
     0.0017   18.2   0.1       0.83    9.5   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
       0.07   12.1   2.2        0.1   11.6   2.2    1.3  1  XRN_M            Xrn1 helical domain
       0.11   12.8   0.0       0.22   11.8   0.0    1.5  1  ToxN_toxin       Toxin ToxN, type III toxin-antitoxin system
        3.2    8.0   6.1        5.8    7.2   6.1    1.4  1  Attacin_C        Attacin, C-terminal region


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1  10.8   5.2e-18   1.2e-14      18     188 ..      61     305 ..      56     309 .. 0.78
   2 ?   -3.7   0.0       2.5   5.5e+03     196     213 ..     329     347 ..     325     353 .. 0.66

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 5.2e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXX...............................XXXXXXXX..... CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLae....lyspelvaaqeeyllalk...............................akkklkkke.... 77 
                 +++ +s++v+G+ + ++v    ++VkkGq L++    +y + + +aq+++   ++                               +       +    
  EHU01085.1  61 QVTFISPQVSGYLTAVNVA-DLQPVKKGQVLMTiddrIYRQRVHQAQAQLAMKQAalsnnqqqrlsaqatiqsnkaalenaraqavK-------Sgldl 151
                 567799************9.9***********855557999********99888866677666666666666655555555555550.......05555 PP

                 ....................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  78 ....................................lleaarerLrllgvseeqiaelektgkvq........ktvtvkapisGvVteknvreGqyvqp 132
                                                     +++ a++ L+ + v+++++++  ++ ++          ++ + +p +G   +++vr+G yv++
  EHU01085.1 152 krvenlaadgslsvrerdaaraanaqglaqlhqaeaQVAVAQQNLQTVIVNRASLEADVASAQAAlelaeidlANTRIISPDAGQLGQLSVRKGAYVTA 250
                 5555555555555555556666667778888888899999**********99999765555444312222222577899******************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 133 gdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptv 188
                 g++l ++    + W++a+  e+qla ++vg +v+++v+al+gk+f+G+v+ i+p  
  EHU01085.1 251 GTRLTSVVPAHK-WIIANYKETQLAHIRVGLPVTIRVDALDGKRFDGRVADISPAA 305
                 ********9877.***************************************9975 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.5
                 XXXXXXX.XXXXXXXXXXX CS
    HlyD_D23 196 kvRield.NpdgkLkpgmf 213
                  vRi+++   +++L+p m 
  EHU01085.1 329 PVRIDVApEVQQQLRPVMS 347
                 5777764145677777764 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   1.0     2e-16   4.4e-13       2      50 .]      62     110 ..      61     110 .. 0.96
   2 ?   -4.1   2.3       6.8   1.5e+04      50      50 .]     131     131 ..     113     146 .. 0.57
   3 ?    0.6   1.2      0.22     5e+02      30      50 .]     179     190 ..     176     218 .. 0.64
   4 !    6.6   0.0     0.003       6.8       5      28 ..     229     252 ..     225     257 .. 0.84
   5 ?   -3.4   0.0       3.9   8.8e+03       9      16 ..     294     301 ..     293     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2e-16
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      v+ I+++vsG ++++nV d q Vk+G+vL+++D+r ++ ++ qa+aqla
       EHU01085.1  62 VTFISPQVSGYLTAVNVADLQPVKKGQVLMTIDDRIYRQRVHQAQAQLA 110
                      678********************************************96 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6.8
  Biotin_lipoyl_2  50 a 50 
                      +
       EHU01085.1 131 Q 131
                      2 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.22
  Biotin_lipoyl_2  30 LaelDsralqlalaqaeaqla 50 
                      La         +l qaeaq+a
       EHU01085.1 179 LA---------QLHQAEAQVA 190
                      44.........4555555543 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.003
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGd 28 
                      I +p +G++ ql V+ G +V aG 
       EHU01085.1 229 IISPDAGQLGQLSVRKGAYVTAGT 252
                      5566689***************95 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.9
  Biotin_lipoyl_2   9 vsGrVaql 16 
                      ++GrVa +
       EHU01085.1 294 FDGRVADI 301
                      79***986 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.0   0.00012      0.27       5      77 ..      68     146 ..      55     178 .. 0.79
   2 ?    0.9   0.3      0.32   7.3e+02      36      62 ..     185     209 ..     170     223 .. 0.55
   3 !   37.5   0.3   1.4e-12     3e-09       2      96 ..     229     337 ..     228     344 .. 0.77
   4 ?    1.5   0.1      0.21   4.8e+02      34      62 ..     326     353 ..     316     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      HlyD_3   5 pvdGvvvelnveegevvqagdelleiip....pdtllveakvpaadlgsik.kkgqkvtlkld.qgsdytl.kgkieris 77 
                  v+G ++++nv   ++v +g++l++i +    ++  +++a+++ +++++   +++q+ + +++ q+++++l +++ + + 
  EHU01085.1  68 QVSGYLTAVNVADLQPVKKGQVLMTIDDriyrQRVHQAQAQLAMKQAAL-SnNQQQRLSAQATiQSNKAALeNARAQAVK 146
                 5899999*********************998656666889988888887.448888888888876666654355555555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.32
      HlyD_3  36 llveakvpaadlgsikkkgqkvtlkld 62 
                 ++++++v++++l+++  +  +++l++d
  EHU01085.1 185 AEAQVAVAQQNLQTV--IVNRASLEAD 209
                 344555555555554..2333333333 PP

  == domain 3  score: 37.5 bits;  conditional E-value: 1.4e-12
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp.........tvdaktg...... 85 
                 + +p +G++ +l+v++g +v+ag++l +++p ++ ++ a   +++l+ i+ +g +vt+++d   +++ +g++  isp         ++d+ tg      
  EHU01085.1 229 IISPDAGQLGQLSVRKGAYVTAGTRLTSVVP-AHKWIIANYKETQLAHIR-VGLPVTIRVDALDGKRFDGRVADISPaagsefsaiSPDNATGnfvkia 325
                 78999*************************6.888**************8.**********77778***********5555444333334333344444 PP

      HlyD_3  86 .aykvevslenp 96 
                  +++v++++ ++
  EHU01085.1 326 qRIPVRIDVAPE 337
                 455566666655 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.21
      HlyD_3  34 dtllveakvpaadlgsikkkgqkvtlkld 62 
                 +++ v++ v+++  ++++ + ++v++ +d
  EHU01085.1 326 QRIPVRIDVAPEVQQQLR-PVMSVEVSID 353
                 577899999999999997.8888888887 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   1.4   9.9e-14   2.2e-10      12      79 ..      39     353 ..      28     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 9.9e-14
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 +                                                                                                  
  EHU01085.1  39 Yawqlwpftspvqstenayvrgqvtfispqvsgyltavnvadlqpvkkgqvlmtiddriyrqrvhqaqaqlamkqaalsnnqqqrlsaqatiqsnkaal 137
                 334477777777777777777777777777777777777777777777777777777777777777777777888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  EHU01085.1 138 enaraqavksgldlkrvenlaadgslsvrerdaaraanaqglaqlhqaeaqvavaqqnlqtvivnrasleadvasaqaalelaeidlantriispdagq 236
                 888888888888888888888888888888888888888888888888888888899999999999999999999999999999999999999999999 PP

                 .................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEEE CS
                 .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxx RF
        HlyD  13 .................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvrv 56 
                                                  et+l ++rvg+pv++r+dA+ ++   +f g V+ isp+                      r+pvr+
  EHU01085.1 237 lgqlsvrkgayvtagtrltsvvpahkwiianykETQLAHIRVGLPVTIRVDALDGK---RFDGRVADISPAagsefsaispdnatgnfvkiaqRIPVRI 332
                 999999999999999999999999999999**************************...9*************************************** PP

                 EEEEEETTEEEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  57 vvekaqgpyyplriglkagalvr 79 
                  v + +++  +lr  ++ ++ ++
  EHU01085.1 333 DVAPEVQQ--QLRPVMSVEVSID 353
                 ******99..9998888877765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0047        11       5      73 .]      66      93 ..      61      94 .. 0.57
   2 !    9.5   0.0   0.00037      0.83      37      70 ..     221     254 ..     208     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0047
                   ESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  5 sPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   sP                                         +++G+++ + v + + v+ g++l++i
     EHU01085.1 66 SP-----------------------------------------QVSGYLTAVNVADLQPVKKGQVLMTI 93
                   33.........................................44666666666666666666666654 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00037
                    ECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEE CS
  Biotin_lipoyl  37 eamKmemeieapkaGvvkeilvkeGdtvevgdll 70 
                    e + +++ i +p+aG++ ++ v +G+ v++g+ l
     EHU01085.1 221 EIDLANTRIISPDAGQLGQLSVRKGAYVTAGTRL 254
                    66778999***********************977 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   4.4e-05       0.1      48     125 ..      67     164 ..      48     221 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
       XRN_M  48 kklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvak.....................s 125
                 ++++gylt  +  +l++v+k  +++ +++++i+r+r ++ +++   ++   +++++++ +++a+++ +k++ ++                        s
  EHU01085.1  67 PQVSGYLTAVNVADLQPVKK-GQVLMTIDDRIYRQRVHQAQAQLAMKQAALSNNQQQRLSAQATIQSNKAALENARAqavksgldlkrvenlaadgslS 164
                 5789**************99.57888999*******999887776666665666666666666666555544443332333444444444444333330 PP

>> ToxN_toxin  Toxin ToxN, type III toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-05      0.22      48     154 ..      45     156 ..      32     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.9e-05
  ToxN_toxin  48 plssakekhkkmknnvdfikikekkkkllgalnlnnMiPvpd.evleeld...inkeekekykdLLqkelkfinknkekilkkakklYkkkik.kknkk 141
                 p++s+ ++ ++     ++  i+ + +++l a+n+    Pv++ +vl ++d   ++++ ++  ++L  k+  + n++++++  +a++  +k    ++  +
  EHU01085.1  45 PFTSPVQSTENAYVRGQVTFISPQVSGYLTAVNVADLQPVKKgQVLMTIDdriYRQRVHQAQAQLAMKQAALSNNQQQRLSAQATIQSNKAALeNARAQ 143
                 78888666666555566677777889***************94444444422155556779999*******************9988777655266688 PP

  ToxN_toxin 142 lkkrccdFklLEe 154
                   k  +d k  E+
  EHU01085.1 144 AVKSGLDLKRVEN 156
                 8889999999887 PP

>> Attacin_C  Attacin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.1    0.0026       5.8       9      84 ..     110     186 ..     103     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0026
   Attacin_C   9 aaaqanLlnnnkhnLdakaFasrnkpa.ngpkfdtfGggldystanghga..slgvshvpklgktdlnaeGranLytsp 84 
                 a +qa L nn++++L+a+a    nk a +  + + +  gld++  +  +a  sl+v + ++    + na+G a L++ +
  EHU01085.1 110 AMKQAALSNNQQQRLSAQATIQSNKAAlENARAQAVKSGLDLKRVENLAAdgSLSVRERDAAR--AANAQGLAQLHQAE 186
                 457999**************999*988999999***********9988873366666666665..79********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2781.92
//
Query:       EHU01086.1  [L=472]
Description: putative outer membrane efflux protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-46  157.0  40.3    6.3e-28   97.9  15.5    2.1  2  OEP       Outer membrane efflux protein
    0.00066   19.4   2.7     0.0016   18.2   2.7    1.6  1  YkyA      Putative cell-wall binding lipoprotein
  ------ inclusion threshold ------
      0.013   14.2   0.6       0.02   13.5   0.6    1.2  1  CsoSCA    Carboxysome Shell Carbonic Anhydrase


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9  15.5   1.1e-31   6.3e-28       1     188 []      58     245 ..      58     245 .. 0.99
   2 !   65.3  16.8     1e-21     6e-18       6     188 .]     271     452 ..     269     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 1.1e-31
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 l++l+++al++npd+++a+ ++++ +a+l+ a ++ +Ptls +++  ++++ s  +g+   t+  +  l++s+++  +g+r   + a +a lea++a  
  EHU01086.1  58 LNRLVEQALQHNPDILIARSRVDQYRAQLRGAEGDNFPTLSGGVAATRQRALSAVTGQPYETSVFQGQLQASYNVDLWGARADTIDATRATLEAQQAAA 156
                 789**********************************************************9999********************************** PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  +a++++++ va+ y+ l ++ eql++ e++l+  +  l+la+++++ G +s l+++qa +++++a+a+  + + q+++++++L+ l+g
  EHU01086.1 157 SAAELTIASSVASGYMTLCALDEQLRVTEATLAIRRNSLRLAQRQFETGYTSRLEWMQASSEYQSAQAQVPQLQHQIAQQENALSILVG 245
                 ************************************************************************************99987 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 1e-21
         OEP   6 alalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarq 104
                 ++ l+++pd+ +a+ ++ aa a l+a+ka+ lP ++l++s+  +++     +dd+   + svg ++  pl++  +  a+v  a a+  +a +++e++++
  EHU01086.1 271 SALLNRRPDIVQAQRQLLAADASLAASKAKLLPGINLTASGTLQRSVLHQLVDDPFRLW-SVGGSILAPLLNREALTAQVDVAMASRNQALYTYEKVVR 368
                 567899*****************************************988887765443.78888889******************************* PP

         OEP 105 qlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +  +ev++a+  +++ ++q+e+++++ +   +al++a  ry++G +s+ld l+aq+ l+ ++++l++ +++l +a+ +L+ +lg
  EHU01086.1 369 NAFSEVNNALDAIRQGEAQREALQKQEQFVAEALRIATNRYQNGYASYLDELDAQRTLFATQLNLVTVKNNLLQAQIALYSALG 452
                 ********************************************************************************9998 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.7   2.6e-07    0.0016      53     152 ..     343     445 ..     339     449 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.6e-07
        YkyA  53 kklsdealenveeReellekekesieeakeefekikeeieei..edeelkkeaeelieameeryeaydklykaYkealeldkeLY.emLkkeeltleel 148
                 ++l +++   +  R++ l ++++++ +a  e++++ + i +   + e+l+k+ + ++ea+   ++ y++ y++Y + l+++++L+ ++L+   ++ + l
  EHU01086.1 343 EALTAQVDVAMASRNQALYTYEKVVRNAFSEVNNALDAIRQGeaQREALQKQEQFVAEALRIATNRYQNGYASYLDELDAQRTLFaTQLNLVTVKNNLL 441
                 567888999999***************************999556889*************************************44666666776667 PP

        YkyA 149 eeqi 152
                 ++qi
  EHU01086.1 442 QAQI 445
                 7666 PP

>> CsoSCA  Carboxysome Shell Carbonic Anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   3.4e-06      0.02       6      59 ..     354     407 ..     350     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-06
      CsoSCA   6 eeenerLaeyekevkerFdrivpvLkeiaalqheedfveraqelareelgfelp 59 
                 +++n++L++yek v+++F+++ ++L  i + + +++  ++ ++ + e l ++  
  EHU01086.1 354 ASRNQALYTYEKVVRNAFSEVNNALDAIRQGEAQREALQKQEQFVAEALRIATN 407
                 679*************************99999999888888888888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3465.44
//
Query:       EHU01087.1  [L=47]
Description: hypothetical protein CKS_4173 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 383.48
//
Query:       EHU01088.1  [L=57]
Description: hypothetical protein CKS_4174 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 535.73
//
Query:       EHU01089.1  [L=486]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-41  139.0   0.0    9.5e-23   80.5   0.0    2.2  2  PLDc_2    PLD-like domain
     0.0011   19.0   0.0     0.0079   16.3   0.0    2.2  2  PLDc      Phospholipase D Active site motif


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     3e-19   2.7e-15       4     133 .]      50     197 ..      49     197 .. 0.81
   2 !   80.5   0.0   1.1e-26   9.5e-23       2     131 ..     284     429 ..     283     431 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 3e-19
      PLDc_2   4 liksAkksidiatyyf...vsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe....t......ll.......gsl 82 
                 l+++A+k++di++y+    +s r ++ a+l+aa+rgvkvr+lld+++ ++g        +l++l  + ++ vr+f+    +       l       +++
  EHU01089.1  50 LMEKATKTLDIQYYIWqndMSGRLLFSAMLDAANRGVKVRLLLDDNN-TPG-----LDDTLAQLNHHPNITVRLFNpfsfRtlralgYLtdfarlnRRM 142
                 5899************776667778*******************943.233.....34566666666888888888554414444440045566779** PP

      PLDc_2  83 HaKlylidgktvivGSsNltkrgldlnlElnvviedk....elakeleeeFerlw 133
                 H+K ++ dg t++vG+ N+ ++++    E ++   d     +++ke++e Fer+w
  EHU01089.1 143 HNKSFTADGITTVVGGRNIGYEYFGTGNEPLFADLDVlaigTVVKEVAEDFERYW 197
                 ************************999999999999999999************9 PP

  == domain 2  score: 80.5 bits;  conditional E-value: 1.1e-26
      PLDc_2   2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe.t.......ll........gslHa 84 
                 ++ i+s +++ di++ yfv++r+ +++ll ++++gvk+ il++s ++++ +v +a  ++++++ll++g+ +++ + +       ++        +sl a
  EHU01089.1 284 LEVIDSPQRQFDIISAYFVPTRAGVAQLLSLKRKGVKIAILTNSLAANDVSVVHAGYAKWRKKLLRHGIALYELKpQagvndapHDrgltgnsgSSLNA 382
                 57899*****************************************************************9999861455554422677788999**** PP

      PLDc_2  85 KlylidgktvivGSsNltkrgldlnlElnvviedkelakeleeeFer 131
                 K++ +d+ ++++GS+N+++r+  ln+E+++vie+++la+e ++ F +
  EHU01089.1 383 KTFSVDEAILFIGSFNFDPRSAVLNTEMGLVIESETLATETHRRFSE 429
                 *******************************************9976 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.14   1.3e+03       4      27 ..     141     164 ..     138     165 .. 0.79
   2 !   16.3   0.0   8.8e-07    0.0079       4      28 .]     379     403 ..     377     403 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.14
                 EE---EEEETTTEEEEE---SSHH CS
        PLDc   4 thHqKivivDdrvafvGgaNLcdg 27 
                 ++H K +  D+  ++vGg N+ ++
  EHU01089.1 141 RMHNKSFTADGITTVVGGRNIGYE 164
                 67888888888899****987665 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8.8e-07
                 EE---EEEETTTEEEEE---SSHHH CS
        PLDc   4 thHqKivivDdrvafvGgaNLcdgr 28 
                 ++++K++ vD+++ f+G++N++ ++
  EHU01089.1 379 SLNAKTFSVDEAILFIGSFNFDPRS 403
                 6899******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3991.76
//
Query:       EHU01090.1  [L=374]
Description: membrane protein required for modification of periplasmic glucan [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-29  100.9  42.0    8.5e-29  100.7  42.0    1.1  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
        8.6    6.2  10.0        1.4    8.8   1.0    2.8  3  PGG            Domain of unknown function


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7  42.0   9.5e-33   8.5e-29       2     339 ..      10     354 ..       9     355 .. 0.77

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 9.5e-33
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   2 aylDllRgiAillVvflHaliayspdagrgspiqasqssqi..aflggfgvplFFllSGfflaamlyrrrglsklikrRilrlliplliwllliil 95 
                    ++lD +R++++ll+v +H++  ys+  +  ++  as+++ +   f+++f++++FF++SG+f + mly r    +++k R+ r+ ip+l    li+l
     EHU01090.1  10 YFLDSIRACLMLLGVPFHVSLIYSSQSWAVNSHDASLWLTTlnDFIHSFRMQVFFVISGYFSY-MLYLRYQPQRFLKVRLERVGIPMLNAVPLITL 104
                    589**********************************9999*********************9.******************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxx..xxx. RF
  Acyl_transf_3  96 lialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllpll..........lrllrkvrkshlllllilllllslv..fir. 178
                     +++  +  ++  s +  l+   +++ ++ + + +++hlWfL +l++l+ l  l           +     +r  +  l+l+lll  +l+  + r 
     EHU01090.1 105 PQFFMLKAWTPKLSNWNNLS---LYDKYNTLMWELISHLWFLLVLVLLTTLGMLTfrslrdqqrnI---DYQRVGWTKLALGLLLWAVLWgaVRRa 194
                    99999999888888888888...79********************999999998888999996533...333333444444333333333003330 PP

                    xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 179 helfgpatsvgllplpsvla...llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimlll 271
                    + + +p+   ++l+ +   a   +lffl  ++l+ ++++ + l + + ++ +l++++++++l+a+ +++  ++   + + ++a ++ ++   ml +
     EHU01090.1 195 IFYAHPSLLGDALFNF---AvmqCLFFLPFFMLGALSWKHQALKTLFVRANPLLYVGAVVMLVAYIANQRLNSGEGWLYETDALISSMMGLCMLNV 287
                    3333333333333333...23575555555555555555555555555555666666666666666666544467777777777777777777778 PP

                    xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 272 lllfalpsrsafk.llrylgkiSygiYliHlpllmllqkllrdwglnlgevlllvlllvvsvivsvvll 339
                     +++ ++++ + +  + yl ++S+ iYl+H pl  l++ ++ ++ +n  ++  ++l+l++++ +s++l+
     EHU01090.1 288 CYSLGHKWLNSHSpQIMYLVNASLFIYLVHHPLTLLYGIFMTPHLHN--NTFGFFLGLLMVFGASFILY 354
                    888888888877799*****************************888..99999999999999999987 PP

>> PGG  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.2   1.1e+04      94     103 ..     143     152 ..     132     167 .. 0.57
   2 ?    8.8   1.0   0.00015       1.4      73     112 ..     221     259 ..     207     262 .. 0.77
   3 ?    2.6   0.4     0.013   1.1e+02      61     114 ..     272     327 ..     269     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.2
         PGG  94 llvllvlsll 103
                 llvl++l  l
  EHU01090.1 143 LLVLVLLTTL 152
                 3333333333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00015
         PGG  73 lllisslvedeakslpkklrvllvllvlsllsllvaFaag 112
                 +++ ++  + ++++l++ ++ ++ ll++  +++lva++a 
  EHU01090.1 221 FFM-LGALSWKHQALKTLFVRANPLLYVGAVVMLVAYIAN 259
                 333.3234789999************************95 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.013
         PGG  61 aiAlvaSlvvvvlllis.sl.vedeakslpkklrvllvllvlsllsllvaFaagly 114
                 + Al++S++ +++l +  sl  +   +++p+ +++++++l++ l+   ++ + g++
  EHU01090.1 272 TDALISSMMGLCMLNVCySLgHKWLNSHSPQIMYLVNASLFIYLVHHPLTLLYGIF 327
                 55999*******99966577889999999***********9998877766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2813.38
//
Query:       EHU01091.1  [L=522]
Description: glucan biosynthesis protein, periplasmic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-198  660.5   0.1   1.8e-198  660.3   0.1    1.0  1  MdoG      Periplasmic glucan biosynthesis protein, MdoG


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  660.3   0.1    1e-202  1.8e-198       1     477 []      33     518 ..      33     518 .. 0.96

  Alignments for each domain:
  == domain 1  score: 660.3 bits;  conditional E-value: 1e-202
                 --HHHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BTTTSSSS-EEEEEE-BTTB-S-BEEEEE-SS-EEE----GGGEE-TTS--- CS
        MdoG   1 FsfetvkekaralaakpyaapeeelpealakldydqyrkirfrpekalwkeeklpfevqffhlgllfkepvkinevedgkareiaydpslFdygkekka 99 
                 F+f++v+++a++l+ k+++ap+++lp++++++++ +y++i+f+++ka+w + ++pf+++f+h+g++f+ pvkine++++++rei+y+p++F++g+ k++
  EHU01091.1  33 FNFDDVAKQAKELSGKSFEAPKSNLPSQFRDMKFADYQQIQFNHDKAYWGKLRTPFKLEFYHQGMYFDLPVKINEITANTVREIKYNPDYFNFGNVKHD 131
                 99***********************************************9999********************************************** PP

                 TTTSTT--EEEEEEEEECCETTE.EEEEEEEESTTEEEE--TT-----EEES-EESTT-TT--B--EEEEEEEE---TT---EEEEEEEEETTEEEEEE CS
        MdoG 100 kelpkdlgfaGfrlhaplnkeev.kdellvflGASYFRavgkgqqyGlsARglaidtaepkgEeFPaFtefwlerpakeaksltvyAlLdspsvtGayr 197
                  ++ k+lgfaGf++ +pln++++  de+++flGASYFR++g+gq+yGlsARglaidta+p+gEeFP+F+efw+erp++++k+l++yAlLdsp++tGayr
  EHU01091.1 132 ADAVKNLGFAGFKVLYPLNSKNKkDDEIASFLGASYFRVIGAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPQDKQLVIYALLDSPRATGAYR 230
                 *******************8555499************************************************************************* PP

                 EEEE-SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEEEES--EEEEE----- CS
        MdoG 198 fvirpgeetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfadenpkGFGLlqrdre 296
                 f+i+pg+et+vdv+++++lR++v klGiapltSmflfg n+++++++frpe+hDsdgL+i++gngewiwRpLnnp++l+vs+++ enpkGFGLlqr r+
  EHU01091.1 231 FTIHPGQETTVDVKTQVYLRDKVGKLGIAPLTSMFLFGRNQPSTVSNFRPELHDSDGLSIHSGNGEWIWRPLNNPRHLAVSTYTIENPKGFGLLQRGRD 329
                 *************************************************************************************************** PP

                 GGGT--TTT-GGG--EEEEEESS---EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGG.T.TSBEEEEEEEEESST.T.-T CS
        MdoG 297 fesYqDlearYekRPslwvepkgdwgkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepka.eeplarvvatrvgkgee.k.ke 392
                 f++YqDl++rY+ RPs wvep g+wgkG+veLveipt dEtnDNivafW+pe+ +++g++++f+Yrl++g++e+k  ++++a+v +t +++g++ + + 
  EHU01091.1 330 FNNYQDLDDRYDLRPSGWVEPLGEWGKGHVELVEIPTADETNDNIVAFWTPENLPEPGKAMDFDYRLNFGRNENKLhSDDVAWVKDTLRSAGDVkQsNL 428
                 ***********************************************************************998876788************6633444 PP

                 T-..-SEEEEEEEEE-TTGGGS-.T---EEEEEE-TT.EEEEEEEEEETTTTEEEEEEEEEES-T.S-EEEEEEEEETTCEEEEEEEEEE CS
        MdoG 393 kr..keskkfvvdfegealekle.eeeveaevtasag.eivessvernpetkgwrlvfdlepede.epvelravLkkgekalsetwlyqw 477
                 +r  + + +f++df g+++++++ +++v+++v++ ++ e+ve+sv++np tkgwrlv++++++d+ +++e+ra+L +g+k+l+etw+yq+
  EHU01091.1 429 VRqpDGTVAFTIDFVGKDMSEMPaDSQVAPQVSVGKNgEVVEQSVRYNPVTKGWRLVLRIRVKDNkQATEMRAALVSGDKTLTETWSYQL 518
                 44458889***********99995556******99877************************555388********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3578.31
//
Query:       EHU01092.1  [L=850]
Description: glycosyl transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-21   75.4   0.0    6.7e-21   74.8   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    1.1e-11   45.0   6.8    1.1e-11   45.0   6.8    2.8  3  Glyco_trans_2_3  Glycosyl transferase family group 2
    9.8e-08   31.7   0.0    2.7e-07   30.2   0.0    1.7  1  Glyco_transf_21  Glycosyl transferase family 21
  ------ inclusion threshold ------
        0.6   10.2   4.8        3.2    7.8   0.1    2.3  2  Arv1             Arv1-like family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.5e-24   6.7e-21       2     168 ..     253     435 ..     252     437 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 1.5e-24
                      EEEEESS-.....TTTHHHHHHHHHHHGGCCEEEEEEEEES-.SSCHHHHHGGGCH......C-TTEEEEEESSS-.HHHHHHHHHHHH--SS. CS
  Glycos_transf_2   2 vviptyNe.....ektlletlesllaqdpypdfeiivvDDgS.tDetveileelak......edprvrvirreenv.Gkagalnaglraatgd. 81 
                       ++p++Ne      + l++t+es+++  ++++f+++++ D+   D + +  +++++      + +++ + rr ++v  k+g++   +r++ ++ 
       EHU01092.1 253 LIMPICNEdvgrvFAGLRATWESVVRTGNAEHFDVYILSDSYdADIAIAEQKAWMElvrdvgGAGKIFYRRRRRRVkRKSGNIDDFCRRWGSNy 346
                      59***************************************867777777777777************************************** PP

                      .EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  82 .yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.generlyfkerkrslkgnlsfeigsaallrrealee 168
                       y+++lDaD++++ ++l  lv+ +e++++++++++ p+ +g+++ + r +++ ++ + + f+ + ++++ + s+++g++a++r++ + e
       EHU01092.1 347 sYMVVLDADSVMSGECLTGLVRMMEANPNAGIIQSSPKASGMDTLYARCQQFaTRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIE 435
                      *************************************************************************************9977 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   2.2       1.1   4.7e+03     169     195 ..     190     216 ..     125     228 .. 0.54
   2 !   45.0   6.8   2.6e-15   1.1e-11       1     169 [.     348     539 ..     348     647 .. 0.72
   3 ?   -4.5   0.7       3.8   1.7e+04     156     176 ..     687     691 ..     656     708 .. 0.45

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
  Glyco_trans_2_3 169 lhlallllfsllalalvlllllllaal 195
                        ++ ++l+  + +++++l++++ a++
       EHU01092.1 190 MQILPYVLQTGILFLFAILFCWVSAGF 216
                      223333333333344444444444443 PP

  == domain 2  score: 45.0 bits;  conditional E-value: 2.6e-15
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivq.......gpvlvmnvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalqe 86 
                      + ++lDaD+v++ +cl +++++++ +p+++i+q         +l+++ + + ++++   f+   + ++++  +lg+    +G++a++r++ + e
       EHU01092.1 348 YMVVLDADSVMSGECLTGLVRMMEaNPNAGIIQsspkasgMDTLYARCQQFATRVYGPLFT---AGLHFW--QLGES-HYWGHNAIIRVKPFIE 435
                      579*********************66*******5443332223334455555555555554...222233..46663.699*********9764 PP

  Glyco_trans_2_3  87 vg.........gwdgdessvsEDfdmglrlqrkGyrvrfvpes.lvkekspltlraalrQrkRwayGc....el......eklil...lvrllg 157
                                  +    s +s Df  +  ++r+G+ v  + +  + +e+ p++l ++l++ +Rw  G+     l      +++++   l+  + 
       EHU01092.1 436 HCalaplpgegSFA--GSILSHDFVEAALMRRAGWGVWIAYDLpGSYEELPPNLLDELKRDRRWCHGNlmnfRLflvkgmHPVHRavfLTGVMS 527
                      44466888776777..89*****************99888777799*********************632220022222211111111222223 PP

  Glyco_trans_2_3 158 ylgsllwsalpl 169
                      yl  +lw+ +++
       EHU01092.1 528 YLSAPLWFMFLA 539
                      333333333221 PP

  == domain 3  score: -4.5 bits;  conditional E-value: 3.8
  Glyco_trans_2_3 156 lgylgsllwsalplhlallll 176
                      + +                +l
       EHU01092.1 687 FLW----------------WL 691
                      111................11 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   6.1e-11   2.7e-07       6     148 ..     319     475 ..     315     498 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 6.1e-11
  Glyco_transf_21   6 llvsgdpvgvnpKvnnllqalea..akydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaaflntlagvlqa..k 94 
                      +++ + ++ v++K  n+   +++   +y+++v++D+d +++ + L+ l++++e  p++g+++s p +s+ ++l+a+ ++     +  +++a  +
       EHU01092.1 319 IFYRRRRRRVKRKSGNIDDFCRRwgSNYSYMVVLDADSVMSGECLTGLVRMMEAnPNAGIIQSSPKASGMDTLYARCQQFATRVYGPLFTAglH 412
                      78889999********************************************998********************9988887444444444353 PP

  Glyco_transf_21  95 l..sglgfavGksmalrreaLeaiGGfeal.......adeLAeDyalgkllraaGlkvvlspa 148
                      +   g +  +G   ++r + + +   +++l       +  L  D++ ++l+r+aG+ v+++ +
       EHU01092.1 413 FwqLGESHYWGHNAIIRVKPFIEHCALAPLpgegsfaGSILSHDFVEAALMRRAGWGVWIAYD 475
                      334488999999999999988888888877333333334589999999999999999998755 PP

>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1   0.00072       3.2      68     159 ..     134     233 ..      92     288 .. 0.71
   2 ?    3.0   1.7     0.022     1e+02     124     186 ..     535     597 ..     518     616 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00072
        Arv1  68 eekfekikslirlvilll.lfevyltwariekksesessslsaqaivlesakelkqylfflvlalletlvfhlsillllslesslsalllky....... 158
                 eek++++ s+ r+++l+l +f+ ++  +++++    +  +l  +++++  +++++q ++ ++  +l+t +++l   l+++++  + ++l+ +       
  EHU01092.1 134 EEKWRHVGSVRRYILLILtVFQTVVATWYMKTILPYQGWTLLDPMDMI--NQNWQQSVMQILPYVLQTGILFLFAILFCWVSAGFWTALMGFlqlligr 230
                 356666788888766654256666666666666666677777777777..79***************************99777766555554555554 PP

        Arv1 159 ..k 159
                    
  EHU01092.1 231 dkY 233
                 440 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.022
        Arv1 124 lfflvlalletlvfhlsillllslesslsalllky.kkarlnalltalllssyaklfpilmlIW 186
                  +fl+l++  ++v +l+  + +  +++l+ +++++ ++    + +t+l+l  + kl+ ++ lIW
  EHU01092.1 535 FMFLALSTALQVVHTLMEPTYFLQPRQLFPVWPQWrPELAIALFSTTLVLLFLPKLLSVV-LIW 597
                 46788888888888888888888888888899***6566777888888888888988875.788 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 5476.53
//
Query:       EHU01093.1  [L=79]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-06   26.9   4.5    4.6e-06   26.9   4.5    2.1  2  DUF1375   Protein of unknown function (DUF1375)
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.21   11.5   0.0    1.2  1  XPB_DRD   Xeroderma pigmentosum group B helicase damage recog
       0.16   12.0   0.1        0.2   11.7   0.1    1.1  1  DUF3568   Protein of unknown function (DUF3568)
        1.2    9.1   4.2        2.6    8.0   4.2    1.7  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> DUF1375  Protein of unknown function (DUF1375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   5.8e+03      10      11 ..      13      14 ..       5      25 .. 0.57
   2 !   26.9   4.5     1e-09   4.6e-06      27      53 .]      47      73 ..      35      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
     DUF1375 10 di 11
                +i
  EHU01093.1 13 AI 14
                33 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1e-09
     DUF1375 27 slatppltivDlPvslvvDTvlLPyDl 53
                 +a  + ti+DlP+sl+vDT+l+P+D+
  EHU01093.1 47 EGAWRIITILDLPLSLIVDTLLIPVDA 73
                5667789*******************6 PP

>> XPB_DRD  Xeroderma pigmentosum group B helicase damage recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.6e-05      0.21       6      34 ..      21      52 ..      19      55 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.6e-05
                TEEEECSSSTT......-CT.EEETTTTEEEE CS
     XPB_DRD  6 GTllidgdprgka.s..lpfvewDeRvekyRa 34
                G +++ + p + +     p+v+wD R +++R+
  EHU01093.1 21 GSIISRTVPGQGHgNqfYPGVKWDVREGAWRI 52
                666666666654431459*************7 PP

>> DUF3568  Protein of unknown function (DUF3568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.4e-05       0.2       1      26 [.       3      28 ..       3      38 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.4e-05
     DUF3568  1 klllllllsislillasCaalvagaa 26
                kl++l+lls+++++l++C ++   + 
  EHU01093.1  3 KLVMLTLLSLAIVTLSGCGSIISRTV 28
                7999**************99987665 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.2   0.00057       2.6       1      15 [.       7      21 ..       4      22 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00057
      LPAM_2  1 lllllallllLaGCG 15
                l ll+++  +L+GCG
  EHU01093.1  7 LTLLSLAIVTLSGCG 21
                5799**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 592.03
//
Query:       EHU01094.1  [L=133]
Description: MsyB family acidic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-64  216.1  10.2    1.4e-64  215.9  10.2    1.0  1  MsyB      MsyB protein


Domain annotation for each model (and alignments):
>> MsyB  MsyB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9  10.2   7.6e-69   1.4e-64       1     122 []       3     124 ..       3     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 215.9 bits;  conditional E-value: 7.6e-69
        MsyB   1 lyatleeaidaareefleshadsekddasveqlslqkyvlqdGdilwqaeflededddgealallsgeaaqaifdgdydeielreewqeentlhewdeg 99 
                 +++tleeaidaareefl++h+d e+dda+++q+ lqkyv+qdGdi+wqaef+ede+d+ge+l+++sgeaaqaifdgd+deielr+ew +entlhewd+g
  EHU01094.1   3 MFTTLEEAIDAAREEFLANHPDLEQDDAAINQFGLQKYVMQDGDIMWQAEFFEDEGDSGECLPIRSGEAAQAIFDGDFDEIELRQEWLAENTLHEWDDG 101
                 89************************************************************************************************* PP

        MsyB 100 efqleppldteeGkaaadewdee 122
                 efqleppld+ eGkaaa+ew+++
  EHU01094.1 102 EFQLEPPLDSGEGKAAAEEWEDD 124
                 ********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1156.05
//
Query:       EHU01095.1  [L=116]
Description: hypothetical protein CKS_4183 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.49   10.1   9.5       0.61    9.8   9.5    1.1  1  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
        5.1    5.3   7.2        6.2    5.0   7.2    1.0  1  DUF2070          Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.5   6.8e-05      0.61     150     244 ..       2     109 ..       1     112 [. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.8e-05
  PhoLip_ATPase_C 150 lqlfgtlvftalvlvvnlkvaletktwtliliililgsillyflfl.............llyssllps.ssefygvleelfsspsfwlvlllvv 229
                      l+l++ +++tal++vv  + a  +++   +l +l l++i l+++++             ++y+  + + + +++  +  l+++  fwl+l l++
       EHU01095.1   2 LWLLSKYAITALMVVVISEAAKRSDRLGGLLAALPLVTI-LVLVWMklegqtqtkiaahAWYTFWYVVpTLPMFILFPFLYQRTGFWLTLGLSC 94 
                      688899999999999999999999988766665555555.6666666678777776555455444444666667679999999*********** PP

  PhoLip_ATPase_C 230 vvallpdllikvlkr 244
                      v++l++ +l+ vl +
       EHU01095.1  95 VLTLIVFVLWAVLLK 109
                      *********998765 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.2   0.00069       6.2      19     126 ..       9     110 ..       3     115 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.00069
     DUF2070  19 lliillalligllaflssklfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsallqalvllalvlslalvfalrll 117
                 ++++l++++i+ +a +s    g ll  lp+++ ++l+  ++++ +g+  ++ ++   +  ++ +v+ +l   +l+ +l++ + + l l+l+ v+ l ++
  EHU01095.1   9 AITALMVVVISEAAKRSDR-LGGLLAALPLVTILVLV--WMKL-EGQ--TQTKIAAHAWYTFWYVVPTLPMFILFPFLYQRTGFWLTLGLSCVLTLIVF 101
                 5666666666777777774.56666666633333333..3322.222..22333333333333333333333344445667788899999999999999 PP

     DUF2070 118 vlvavsdes 126
                 vl+av  ++
  EHU01095.1 102 VLWAVLLKR 110
                 999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 941.13
//
Query:       EHU01096.1  [L=307]
Description: lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-103  344.3   0.0   5.6e-103  344.2   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.2   0.0  3.1e-107  5.6e-103       2     295 .]       5     298 ..       4     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 344.2 bits;  conditional E-value: 3.1e-107
  Lip_A_acyltrans   2 kkfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvaf 95 
                      ++f+++l h+rywl+wlgi++l +l+llP+++l+ +++g+gr+a +f+krr +iar+NL+l fp+++ + re++i+ +fesvg+ ++et++++f
       EHU01096.1   5 PQFSRALFHPRYWLTWLGIIFLYILVLLPYPLLYALGSGIGRIAMRFMKRRVAIARRNLELSFPDMPTNDREAMIKHNFESVGMGLIETGMAWF 98 
                      799******************************************************************************************* PP

  Lip_A_acyltrans  96 isdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalr 189
                      ++d +i k+ +  glehi++a + ++gv+l+++Hf+++e+++++++ ++pg++v+++n+ n+l+++l++++R+r+++ +l+rk+ +k++i+al+
       EHU01096.1  99 WPDWRIHKWHTPSGLEHIQQAHDTQRGVLLIGMHFLTLEIGARMFGIHNPGIGVYRPND-NKLIDWLQTRGRMRSNKGMLDRKD-LKGMIRALK 190
                      ***********************************************************.************************.********* PP

  Lip_A_acyltrans 190 kgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktk.aavipvaiirkkdgskytvsvhPal..dlssteDveqiaqalneilekeit 280
                      +g +++++pD+d+g+++svfvpfFg+++a+tt ++ ++++t+  avip++++r ++g +y++++ P +  d+  t ++e++a+++n+++e+ + 
       EHU01096.1 191 RGDIIWYAPDHDYGPRSSVFVPFFGVDKAATTVGTHMLMRTGkPAVIPFVPRRLPEGRGYELIILPDVsaDFPLT-SEEDTAARMNKVVEEGVL 283
                      *****************************************9789*********************873356677.****************** PP

  Lip_A_acyltrans 281 aaPeqylwlhrrfkt 295
                       aPeqy+wlhrrfkt
       EHU01096.1 284 LAPEQYMWLHRRFKT 298
                      **************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2412.25
//
Query:       EHU01097.1  [L=349]
Description: rhodanese-related sulfurtransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-20   72.4   0.0      5e-20   71.6   0.0    1.4  1  UPF0176_N    UPF0176 acylphosphatase like domain
    1.6e-19   70.0  14.2      3e-19   69.2  14.2    1.4  1  Rhodanese_C  Rhodanase C-terminal
    2.3e-12   47.3   0.1      4e-12   46.6   0.1    1.4  1  Rhodanese    Rhodanese-like domain
  ------ inclusion threshold ------
      0.033   14.1   0.2       0.17   11.7   0.0    2.1  2  TERT_thumb   Telomerase reverse transcriptase thumb DNA bindi


Domain annotation for each model (and alignments):
>> UPF0176_N  UPF0176 acylphosphatase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.1e-23     5e-20       2      92 .]      25     117 ..      24     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.1e-23
   UPF0176_N   2 rvlsfYkFvpledpealaeelrelleelgllGrilvAeEGiNgtlavpeealeaflaalrs.deelsdlelklsls.seppFerlkvkvkkeI 92 
                 +++sfYk+++++dp+a+++ l   l++l++ Gri+vA+EGiN++++vp++++ea++a+l   d+ l++l+++ +l  + ++F  l+ kv++ I
  EHU01097.1  25 TTVSFYKYFTIADPKAFRDALYVGLTALKVFGRIYVAHEGINAQISVPASQYEAMKAFLYGfDPALDNLRMNIALDdDGKSFWVLRLKVRDRI 117
                 579**********************************************************999**********88689***********987 PP

>> Rhodanese_C  Rhodanase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2  14.2   6.6e-23     3e-19       1      64 []     245     308 ..     245     308 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 6.6e-23
  Rhodanese_C   1 rGklfVFDkRl..alksevvgkCieCgkpvdelrkrnCanedCnelvlvCeeCaeklkgvcseeCk 64 
                  +Gk+fVFD+R+  +++++v+++C++Cg+p+d  +++nC n+ C+ l+++Ce+Caek++++cs  C+
   EHU01097.1 245 KGKNFVFDERMgeRISDDVLAHCHQCGEPCD--THVNCVNDGCHLLFIQCESCAEKYEHCCSPLCQ 308
                  7**********8777999*************..********************************6 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1     9e-16     4e-12       2     105 ..     138     232 ..     137     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 9e-16
   Rhodanese   2 akelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGG 100
                 a+e+ +++++++++++D R+ +eYe g+  +A+ v       +  + +++l +  ++l++  +++k++v yc gg r + a a ++  G+++v++++GG
  EHU01097.1 138 AAEVNAMIDDPDAVFVDMRNHYEYEVGRFDNALEV-------PADTFRDQLPMAVDMLKD--KKDKKIVMYCTGGIRCEKASAWMRHNGFQDVYHVEGG 227
                 68999*******99*********************.......555566666666666666..89*************77776666669*999******* PP

   Rhodanese 101 fkawk 105
                 + +++
  EHU01097.1 228 IIEYA 232
                 98886 PP

>> TERT_thumb  Telomerase reverse transcriptase thumb DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.9e-05      0.17      52     101 ..      65     114 ..      57     123 .. 0.91
   2 ?   -0.6   0.1      0.23     1e+03      37      77 ..     130     170 ..     115     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
                 SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--S-GTTHHHHHHHHHH CS
  TERT_thumb  52 fndqrtvfanfydamicvaykfdaammalrtsflvndfgfiwlvlsstvr 101
                 +n q +v a  y+am +  y fd a+  lr ++ ++d g  + vl   vr
  EHU01097.1  65 INAQISVPASQYEAMKAFLYGFDPALDNLRMNIALDDDGKSFWVLRLKVR 114
                 689999********************************999999988887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.23
                 GGGGGGSSHHHH-SSSS-HHHHHHHHHHHHHHHHHHHHHHH CS
  TERT_thumb  37 pficnsftkfefntvfndqrtvfanfydamicvaykfdaam 77 
                   + n +   e+n++++d  +vf ++ +       +fd a+
  EHU01097.1 130 SNVGNYLKAAEVNAMIDDPDAVFVDMRNHYEYEVGRFDNAL 170
                 55666677777788888877777776665555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2861.47
//
Query:       EHU01098.1  [L=191]
Description: secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-41  142.8   0.4    1.3e-41  142.6   0.4    1.1  1  YceI      YceI-like domain


Domain annotation for each model (and alignments):
>> YceI  YceI-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.4     7e-46   1.3e-41       1     145 [.      26     187 ..      26     188 .. 0.93

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 7e-46
                 EEE-C..CC-EEEE........-EEEEECTECCEEEE..TTT..EEEEEEEEGGGEESS.HCHHHHHHCTCTT-TTT--EEEECCCCEE........EE CS
        YceI   1 Ytldp..ahssvtftvkhlgvskvtGrfkkvsgelsvdeddp.essvevtidvasidtgnakrdehlksadffdvakyPtatFvstsve......akvt 90 
                 Y++d+  +h+ v+f+++hlg+s + G+fk+++g++++d+d+p + +v+vti+++s+dt++a+rd+h+++++f++vak+PtatF+stsv+      a vt
  EHU01098.1  26 YKIDKegQHAFVQFRIQHLGYSWLYGTFKDFDGSFTFDADNPtADKVDVTIKTNSVDTNHAERDKHIRGPEFLNVAKHPTATFKSTSVKkdgdklA-VT 123
                 778876789*********************************88**************************************************55.** PP

                 EEEEETTEEEEEEEEEEEEEEE........CCEECEEEEEGGGGTC...TTTC-SEEEEEEEEE CS
        YceI  91 GdLtikGvtkpvtlpvtvngaa........agfsatgtidrtdFGlkr.galvgdeveleiele 145
                 GdLt++Gvtkpvtl++++ g++        agf+a+g+i ++dF+++   +  +++vel i++e
  EHU01098.1 124 GDLTLNGVTKPVTLEAKMMGEGkdpwggyrAGFEAEGEIALKDFNITHdLGPASQNVELIISVE 187
                 ******************98655677777799**************889556999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1780.30
//
Query:       EHU01099.1  [L=191]
Description: putative cytochrome b561 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-29  100.7  16.4    8.3e-29  100.5  16.4    1.0  1  Ni_hydr_CYTB    Prokaryotic cytochrome b561
     0.0033   17.9   6.5     0.0033   17.9   6.5    2.8  2  DUF4405         Domain of unknown function (DUF4405)
  ------ inclusion threshold ------
      0.065   13.4   7.9      0.026   14.7   3.8    2.1  2  Cytochrom_B561  Eukaryotic cytochrome b561
      0.075   12.8   8.9        1.8    8.4   0.2    2.5  2  DUF2427         Domain of unknown function (DUF2427)
        5.7    7.0  14.1        1.5    8.8   0.2    3.0  3  DUF1145         Protein of unknown function (DUF1145)


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5  16.4   2.3e-32   8.3e-29       1     181 [.       9     180 ..       9     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 2.3e-32
                   -----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-HHHHHHHHHHHHHHHHHHHHHHH------------STTTSSSSS------------ CS
  Ni_hydr_CYTB   1 ryslvarllHWlnallvvllllsgllianlhprlywgdsgkaralHklaGlvllalllfrllwlkkakkpspriifrqikrdltlllrgrkpeagkn 97 
                   ry+l++++lHW +a+++ ++++ gl++  l   + w + +   ++Hk++G++l++ l++rl+w+                     +l+ ++ + + +
    EHU01099.1   9 RYGLLTIFLHWSMAVVIYAMFALGLWMVGLSYYDSWYHNA--PDIHKSIGVLLMLALVIRLVWR---------------------VLSPPPEPLRSY 82 
                   79***********************************998..**********************.....................788887777888 PP

                   ----TT....THHHHHHHHHHHHHHHHHHHT...HHHHHHHH.........HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH---X.XXXXXX CS
  Ni_hydr_CYTB  98 nplqkl....vhlllyvllvvliltGlllsf...aatagfpll......lddkggaqlarelHellaaallafvvlHiaaallhgpvkkd.tlrrMi 180
                   +p  +     vh+lly ll++l l+G+l+s+   +  + f+++      +  ++ a+la+ +H +la+ ++++ vlH +aal h+++++d tl+rM+
    EHU01099.1  83 SPAVRFaavfVHWLLYSLLIALLLSGYLISTadgKPVSVFGWFslpasfSGAGEQADLAGNIHLWLAWSIVVLSVLHGLAALKHHFIDRDiTLKRML 179
                   8877778**********************9977755566777799999999*********************************************8 PP

                   X CS
  Ni_hydr_CYTB 181 t 181
                   +
    EHU01099.1 180 G 180
                   6 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   3.7     0.077   2.8e+02      39      60 ..      44      65 ..      12      67 .. 0.66
   2 !   17.9   6.5   9.2e-07    0.0033       1      61 [.      92     159 ..      92     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.077
     DUF4405 39 skhqwrdiHeilgllflilvvl 60
                 +h + diH+ +g+l+++++v+
  EHU01099.1 44 WYHNAPDIHKSIGVLLMLALVI 65
                3577899**********99986 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 9.2e-07
     DUF4405   1 iidlllllsflvlaiSGillsfavlpsgrgaywa.....flgl..skhqwrdiHeilgllflilvvlH 61 
                 ++ +ll  + ++l++SG l+s a   ++++ +w      f g   + + +++iH +l++  ++l vlH
  EHU01099.1  92 FVHWLLYSLLIALLLSGYLISTADGKPVSVFGWFslpasFSGAgeQADLAGNIHLWLAWSIVVLSVLH 159
                 68899****************9955555555554787775555889999******************* PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   3.8   7.3e-06     0.026      34     131 ..      14     110 ..       3     115 .. 0.91
   2 ?    0.2   0.1      0.22   7.7e+02      37      58 ..     144     165 ..     122     185 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.3e-06
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  34 kkllHlilqllalilavvgllavfksknekeianlyslHswlGlvtvilfllqlvlGfvlfllpklskklralllplHvllGlvifvlaivtall 128
                     + +lH+ + ++  ++ ++gl++v  s  ++ ++n   +H  +G++ ++ +++ lv  +++   p+  ++++++++   v++  + + l i+ +l+
      EHU01099.1  14 TIFLHWSMAVVIYAMFALGLWMVGLSYYDSWYHNAPDIHKSIGVLLMLALVIRLVWRVLSPP-PEPLRSYSPAVRFAAVFVHWLLYSLLIALLLS 107
                     5689***************************************************9999988.77778899999999999999999999999999 PP

                     HHH CS
  Cytochrom_B561 129 Gll 131
                     G+l
      EHU01099.1 108 GYL 110
                     985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.22
                     HHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  37 lHlilqllalilavvgllavfk 58 
                     +Hl+l    ++l+v+  la++k
      EHU01099.1 144 IHLWLAWSIVVLSVLHGLAALK 165
                     4444444433333333333333 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.5   0.00067       2.4      48     101 ..      19      72 ..       1      74 [. 0.63
   2 ?    8.4   0.2    0.0005       1.8      70     100 ..     135     164 ..     119     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00067
     DUF2427  48 lpvqivnlvlavlgl.llghiykgstPelypnn..iyaklswillillavqvvlavl 101
                   + +v  ++ +lgl ++g+ y  s   +y n+  i+++++++l++ l++ +v  vl
  EHU01099.1  19 WSMAVVIYAMFALGLwMVGLSYYDS---WYHNApdIHKSIGVLLMLALVIRLVWRVL 72 
                 3334444444444431444445555...77775559*************99987665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0005
     DUF2427  70 gstPelypnniyaklswillillavqvvlav 100
                 g++ +l ++ni+  l+w +++l++++ ++a+
  EHU01099.1 135 GEQADL-AGNIHLWLAWSIVVLSVLHGLAAL 164
                 456678.9******************99997 PP

>> DUF1145  Protein of unknown function (DUF1145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.9      0.76   2.7e+03      30      41 ..      14      25 ..      10      37 .. 0.59
   2 ?    6.7   1.5     0.002       7.1       6      54 ..      56     104 ..      53     107 .. 0.86
   3 ?    8.8   0.2   0.00042       1.5      25      48 ..     140     163 ..     138     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.76
     DUF1145 30 nlllnialgfll 41
                 ++l++ +++++
  EHU01099.1 14 TIFLHWSMAVVI 25
                455555555443 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.002
     DUF1145   6 GKllmlgfWlvlllNLihPfpkplnlllnialgflllmHllqlllfkat 54 
                 G llml++ + l+   ++P p pl+ + +   ++ +++H+l + l+ a 
  EHU01099.1  56 GVLLMLALVIRLVWRVLSPPPEPLRSYSPAVRFAAVFVHWLLYSLLIAL 104
                 667777777777788899***************************9886 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00042
     DUF1145  25 fpkplnlllnialgflllmHllql 48 
                 ++++++l+l +  ++l ++H+l +
  EHU01099.1 140 LAGNIHLWLAWSIVVLSVLHGLAA 163
                 689******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1567.40
//
Query:       EHU01100.1  [L=372]
Description: FAD-binding N-methyltryptophan oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-48  165.5   0.1    2.7e-48  165.4   0.1    1.0  1  DAO            FAD dependent oxidoreductase
      3e-05   23.4   0.0      0.029   13.6   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00058   19.2   0.0     0.0082   15.4   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00066   18.5   0.1       0.66    8.6   0.1    2.2  2  HI0933_like    HI0933-like protein
     0.0042   17.3   0.1     0.0091   16.2   0.1    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0058   16.0   1.0      0.011   15.1   0.8    1.5  2  FAD_oxidored   FAD dependent oxidoreductase
     0.0098   15.0   0.2      0.014   14.5   0.2    1.2  1  FAD_binding_2  FAD binding domain
  ------ inclusion threshold ------
      0.026   13.7   0.1      0.039   13.2   0.1    1.2  1  Thi4           Thi4 family
      0.028   13.5   0.3      0.056   12.5   0.2    1.5  2  GIDA           Glucose inhibited division protein A
       0.14   12.1   0.1        0.2   11.5   0.1    1.2  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
        0.2   10.9   0.1       0.36   10.0   0.1    1.3  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.1   1.6e-51   2.7e-48       1     350 [.       4     350 ..       4     352 .. 0.87

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 1.6e-51
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.gaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeel 96 
                 d++++G+G +G+++ y+++++g  V+ +++++ +++ ga ++ s+l++ ++ + +   ++++l+l+a+ +++ele++ g  i  +r+G+l la  +   
  EHU01100.1   4 DLIVVGSGSVGAAAGYYATQAGlsVLMIDSAHPPHHqGAHHGESRLIRHAYGEGE---RYVPLVLRAQTLWDELEQQAGERI-MHRCGVLNLAPVQ--S 96 
                 789****************************999966************775455...899****************99755.677******9764..7 PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT..ST.TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEE CS
         DAO  97 ealdkllallleagldaelldaeevrelepa..lp.gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gend 191
                 e +++ + +++ + l++e+l a+ vr+++p+  +p g+lg +f+p++g +  ++++++  + ae++G+  l++++vt +++ dg +++v  tt  g  +
  EHU01100.1  97 EFIQNVVSSAQTWQLPVEVLQAADVRKRWPQlaVPdGYLG-VFEPNSGFLKSEQAVRSWIQLAEKQGCAQLFNCPVTQIRR-DGELQQV--TTLdGLYR 191
                 778788888899**********99*******663358776.9*************************************55.7888999..77779876 PP

                 EEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.EEETTTTEEEEEETTSEEEEEESSE......EETTCSSTSCSH CS
         DAO 192 aadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe.tdddgrgvyvtprkdgrvlvGgtad......eesgdddpevde 282
                   +++ +++G w++ l+   ++l  pi p+r     ++   +   s+++ +p +     dg  +y +p  ++ ++vG ++       + ++  ++   +
  EHU01100.1 192 G-RKLLVSTGTWVSkLV---PDL--PIAPTRKVFAWYQADGR-Y-SENNAFPGFTcEMPDGSQYYGFPADNNALKVGRHDGgqlmttP-EDRKPFGSLS 281
                 5.99********88777...888..******99999955444.3.334677777778999999*****99999*****9889998743.3334456777 PP

                 HHHHHHHHHHHHHSGGGCGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 283 edidellealrklfPqlgdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGklla 350
                 +d  e  + lr+++P++g  l+  a+ ++  pd++++i+  pg ++ ++ tG sghG+++a + G+l++
  EHU01100.1 282 ADGSEAFRFLRQFLPGVGVCLHGEACSYDvSPDEDFIIDTLPGEPNRLIITGLSGHGFKFASVLGELAS 350
                 78888999*********9999********559********9999**********************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0011       1.8       1      30 [.       6      34 ..       6      42 .. 0.92
   2 !   13.6   0.0   1.8e-05     0.029      73     153 ..     140     219 ..     100     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i++G G  G aa++ + +agl ++l ++ +
   EHU01100.1  6 IVVGSGSVGAAAGYYATQAGL-SVLMIDSA 34
                 89*******************.79999875 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.8e-05
  Pyr_redox_3  73 lkeeklsrkealeYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhy 153
                   ++  l+ ++a++   ++a+++      ++ V+++ +++e  +v+t  + y+ +k++++tG +    +++ p +  + k++
   EHU01100.1 140 PNSGFLKSEQAVRSWIQLAEKQGCAQLFNCPVTQIRRDGELQQVTTLDGLYRGRKLLVSTGTWVSKLVPDLPIAP-TRKVF 219
                  556667778888888888888888888999********************************9999999988887.55554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     5e-06    0.0082       1      41 [.       3      42 ..       3     110 .. 0.69
   2 ?    1.3   0.0       0.1   1.7e+02     192     237 ..     157     201 ..     136     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5e-06
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcl 41
                 +d++v+G+G  G aa  ++ qag+ v++++   + ++++  
   EHU01100.1  3 YDLIVVGSGSVGAAAGYYATQAGLSVLMID-SAHPPHHQGA 42
                 689**************************6.3333333333 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.1
                  HHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 192 alekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGv 237
                    ek+G +  +++ v++i+++ge l+ v++    +  + ++v++G 
   EHU01100.1 157 LAEKQGCAQLFNCPVTQIRRDGE-LQQVTTLDGLYRGRKLLVSTGT 201
                  468889999*************8.7755555555788888888886 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00041      0.66       2      33 ..       4      35 ..       3      48 .. 0.92
   2 !    7.6   0.0   0.00082       1.3     107     164 ..     146     201 ..     137     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00041
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d+iv+G G  G  a   a ++g +Vl++++a+
   EHU01100.1  4 DLIVVGSGSVGAAAGYYATQAGLSVLMIDSAH 35
                 89***************************975 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00082
                  -CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 107 kaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  k+e+ v+ +++ ++++g+    ++ v++++++ +   +v+t  ++ ++ +kl+++tG 
   EHU01100.1 146 KSEQAVRSWIQLAEKQGCAQLFNCPVTQIRRDGEL-QQVTT-LDGLYRGRKLLVSTGT 201
                  79999************************775555.78888.899**********995 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.6e-06    0.0091       1      29 [.       7      35 ..       7      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.6e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   +vG+G  G++a y++++ag++vl +++++
     EHU01100.1  7 VVGSGSVGAAAGYYATQAGLSVLMIDSAH 35
                   8*************************975 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.8     7e-06     0.011       1      30 [.       4      33 ..       4      36 .. 0.95
   2 ?   -2.4   0.0       1.4   2.3e+03      84     125 ..     145     185 ..      93     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  D++VvG+g+ G aA + A +aG +vl+++ 
    EHU01100.1  4 DLIVVGSGSVGAAAGYYATQAGLSVLMIDS 33
                  99*************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
  FAD_oxidored  84 fepevakavleemlaeagvtvllntrlvevekegkriesvtv 125
                    + e a + + ++ +++g   l+n+ +++++++g ++++vt+
    EHU01100.1 145 LKSEQAVRSWIQLAEKQGCAQLFNCPVTQIRRDG-ELQQVTT 185
                   4555666666666688888889999999998887.7888877 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   8.8e-06     0.014       1      33 [.       4      36 ..       4      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.8e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D+iV+GsG  G aA++ a++aGl+v++++ +++
     EHU01100.1  4 DLIVVGSGSVGAAAGYYATQAGLSVLMIDSAHP 36
                   89*************************998765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.4e-05     0.039      18      49 ..       3      33 ..       1      45 [. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 D+++vG+Gs G +a+yy +++ +l v+++++
  EHU01100.1  3 YDLIVVGSGSVGAAAGYYATQA-GLSVLMIDS 33
                69****************9888.*****9986 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   3.4e-05     0.056       1      29 [.       4      38 ..       4      51 .. 0.84
   2 ?   -2.8   0.0       1.5   2.5e+03     117     152 ..     170     203 ..     156     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE......E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi......t 29
                d+iV+G G  G +A + a ++G++vl+i       
  EHU01100.1  4 DLIVVGSGSVGAAAGYYATQAGLSVLMIdsahppH 38
                689************************97655542 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                 -EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-B CS
        GIDA 117 eveeliveekkvkgvvtedgetikakavviatGtfl 152
                  v+++  ++++++ v+t dg  ++ ++  ++tGt++
  EHU01100.1 170 PVTQI-RRDGELQQVTTLDG-LYRGRKLLVSTGTWV 203
                 56666.44677777777666.578889999999976 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00012       0.2       4      41 ..       7      44 ..       4      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdiseealekalek 41
                v+G+G +Ga   + + +agl+V ++d ++   ++++++
  EHU01100.1  7 VVGSGSVGAAAGYYATQAGLSVLMIDSAHPPHHQGAHH 44
                9*************************976655555555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00022      0.36       3      37 ..       4      38 ..       3      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00022
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37
                   d ++VG+G +G+ ++   ++aG +v++++     +
     EHU01100.1  4 DLIVVGSGSVGAAAGYYATQAGLSVLMIDSAHPPH 38
                   678**************************877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2981.32
//
Query:       EHU01101.1  [L=84]
Description: regulator of biofilm formation [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-37  125.9   0.1    5.2e-37  125.8   0.1    1.0  1  BssS      BssS protein family


Domain annotation for each model (and alignments):
>> BssS  BssS protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.1   2.9e-41   5.2e-37       1      69 [.      11      79 ..      11      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2.9e-41
        BssS  1 fPvvgwdistvdsydllmirlhylssedqkpeeaevgrtlvLttdvarqLisiLeagidkiEsseylkr 69
                +P+vgwdistvdsyd++mirlh lss+dq++e+a+vg+t++Lttdvarq+isiLeagi+kiEs e+ +r
  EHU01101.1 11 HPLVGWDISTVDSYDAMMIRLHSLSSQDQTEEDADVGPTYWLTTDVARQFISILEAGIAKIESAEQVER 79
                9****************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 680.19
//
Query:       EHU01102.1  [L=90]
Description: hypothetical protein CKS_4190 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1254  (0.0699426); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 671.71
//
Query:       EHU01103.1  [L=81]
Description: DNA damage-inducible protein I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-29  101.3   0.3    3.2e-29  101.0   0.3    1.1  1  DinI      DinI-like family
  ------ inclusion threshold ------
      0.042   13.4   0.1      0.049   13.1   0.1    1.0  1  DUF2868   Protein of unknown function (DUF2868)
       0.14   12.7   0.0       0.71   10.4   0.0    1.9  1  YtxH      YtxH-like protein


Domain annotation for each model (and alignments):
>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.3   5.4e-33   3.2e-29       1      63 []      14      78 ..      14      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 5.4e-33
                -TTHHHHHHHHHHHHHHHH-SS..-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHTHHHH- CS
        DinI  1 pagaiealeaELskRiqevfPd..aevrvrkasanglsveGaskedkeriseiLQetwesADdWl 63
                paga+eal++ELs+Ri+e+fP+  ++v+vr+a an+lsv+G++k+ +e+iseiLQ+twesADdW+
  EHU01103.1 14 PAGAMEALSQELSRRIDEQFPQftNQVKVRYATANQLSVMGGDKDTREQISEILQQTWESADDWF 78
                89*********************9****************************************8 PP

>> DUF2868  Protein of unknown function (DUF2868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.2e-06     0.049     191     253 ..      11      75 ..       4      78 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-06
     DUF2868 191 eaepepasepadvlelelderla....elelraglgvrvaasaadgGrld.drearsrvlaslaesap 253
                 ++ p+ a+   ++l  el++r +    + + + ++++ +a+++ ++G+ + +re++s++l++++esa+
  EHU01103.1  11 QPLPAGAM---EALSQELSRRIDeqfpQFTNQVKVRYATANQLSVMGGDKdTREQISEILQQTWESAD 75 
                 44444444...4566677766666676666666677777888888888888**************986 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.71      25      70 ..      24      74 ..      17      78 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
        YtxH 25 etRkdlkekaddlkekakelleeakeka.....kekaedlkekvkekadel 70
                e+ +++ e++ ++ +++k  + +a++ +     k++ e+++e ++++ +++
  EHU01103.1 24 ELSRRIDEQFPQFTNQVKVRYATANQLSvmggdKDTREQISEILQQTWESA 74
                666677777777777777777666666677777777777777666665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      725  (0.0404373); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 697.32
//
Query:       EHU01104.1  [L=347]
Description: dihydro-orotase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-17   62.9   0.0    4.2e-17   62.5   0.0    1.0  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   2.3e-21   4.2e-17       8     307 ..      15     314 ..      14     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.3e-21
                   EEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSHHHHHHHHHHH CS
  Amidohydro_1   8 DaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldrgsaetskasreklkag 104
                   D+H+Hl+++ ++++      v p t+a+  +  ++ +l  ++ +va+  a    + +++l a+ +   g              + + ++++ +   +
    EHU01104.1  15 DWHIHLRDDDMLNT------VLPYTSAVNGRAIVMPNLVPPVVSVAAGEA----YRNRILAALPD---G------------HAFTPLMTCYLTDSLE 86 
                   9************9......***************************999....***********...4............4555555555555555 PP

                   HHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHH......HHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEE CS
  Amidohydro_1 105 aaetikgkadgvvk.valapheapafsdeelkealk......eakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldeiklil 192
                   a+e+ +g+ +g+++ ++l+p+ a+++s  ++ ++++           ++p+ +H    ++  +++d+ea f+et++++    ++         k+++
    EHU01104.1  87 ADELARGFQSGLFTaAKLYPAHATTNSSHGVTNIASiasvleRMQTLGMPLLVHGevTDSHIDIFDREARFIETVMEPLRKQFPAL-------KVVM 176
                   5555566699*******************666665555544255566**********9999***********99999777777666.......**** PP

                   HCTCEEEHH..........HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHHTSC.EEEEEECT........TSSCCGGHHHHH CS
  Amidohydro_1 193 ahgvhltpt..........eaellkerlkeagva.........hcpfsnsilrsgrealrkaldeGvk.vglgtDga........asgnslnlleel 261
                   +h+++ +++           a++++++l+ +++          +++ + ++ +++ +alr+ + +G   ++lgtD a        +s+ ++     +
    EHU01104.1 177 EHITTKDAAdyvesanenlAATITPQHLMFNRNHmlvggirphLYCLPILKRNTHQQALRRIVASGHPrFFLGTDTAphlrhlkeSSCGCA-----G 268
                   *******443455677889888888998766666888****************************6655******9999999988888888.....9 PP

                   HHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS- CS
  Amidohydro_1 262 rlalklqrgllyedeegglslkealrmaTingAkalglddkvGsie 307
                    ++++++ + ++++ e    l ++ ++++ ng +++gl+ + G+++
    EHU01104.1 269 VFNAPTSLPAYATVFEELNALQHFEAFCSENGPRFYGLPLNEGTLT 314
                   ********99999989988899999*************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2811.65
//
Query:       EHU01105.1  [L=187]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-55  185.6   1.1    5.3e-55  185.4   1.1    1.0  1  DUF1439   Protein of unknown function (DUF1439)
  ------ inclusion threshold ------
      0.067   12.8   0.1      0.081   12.5   0.1    1.1  1  APG5      Autophagy protein Apg5
      0.072   13.6   0.5       0.15   12.6   0.5    1.6  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DUF1439  Protein of unknown function (DUF1439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   1.1   8.9e-59   5.3e-55       1     151 [.      28     179 ..      28     180 .. 0.99

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 8.9e-59
     DUF1439   1 isEqelnkyLakkleiekkvglpgllkadvkledlqvqlgreerdkvalsarakvklsallgklkatlkltleakpsYdaekgaiyLkdlellslevep 99 
                 isEqe+n++L+k++++ek++g+ gl++a+++l++l++q+gr+ ++kv+ls++ak+++s+l+g+++a+++l+++a+p++d+++gaiyL+d+e+++ +v+p
  EHU01105.1  28 ISEQEVNQALQKHNNFEKDIGVSGLVNAHIVLTNLNSQIGRDVPGKVTLSGDAKINVSSLFGPQQADMQLKMRAQPVFDQQQGAIYLRDMEIVDAQVQP 126
                 8************************************************************************************************** PP

     DUF1439 100 eklegklkallpllnqslaqyLeeqPvYvLdeeksk.ealakklakdieVkpg 151
                 ek+ + +k+l+p+lnqsl++y++++P+YvL+ ++sk e+lakk+ak++eVkpg
  EHU01105.1 127 EKMASIMKTLTPYLNQSLKSYFDQHPAYVLSADRSKaESLAKKFAKGLEVKPG 179
                 ****************************************************9 PP

>> APG5  Autophagy protein Apg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.4e-05     0.081     106     203 ..      52     176 ..      16     184 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
        APG5 106 sinskllpspek.kkvreiPiriylpdankdqt..............................esekviqelvpplkedgqpqtLgdllsellpelfps 173
                  +n++++ ++ + +  r +P ++ l+  +k++                                + +++++ v+p+k  +  +tL  +l++ l ++f +
  EHU01105.1  52 LVNAHIVLTNLNsQIGRDVPGKVTLSGDAKINVsslfgpqqadmqlkmraqpvfdqqqgaiylRDMEIVDAQVQPEKMASIMKTLTPYLNQSLKSYFDQ 150
                 4666666665566899999999999777766557899999999999999999*********999*********************************97 PP

        APG5 174 kkkkekasssekeegsaaelakvliqGiev 203
                 +     + ++    ++a++lak + +G ev
  EHU01105.1 151 HPAYVLSADR----SKAESLAKKFAKGLEV 176
                 7666655322....2234556656666555 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   2.5e-05      0.15       5      18 .]       8      21 ..       1      21 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
      LPAM_1  5 llalgalllLsGCs 18
                l+al++++lLsGC+
  EHU01105.1  8 LVALFLAVLLSGCN 21
                89***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1355.16
//
Query:       EHU01106.1  [L=196]
Description: ribosomal-protein-S5-alanine N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-16   59.3   0.1    7.8e-16   59.0   0.1    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    2.9e-08   34.0   0.0    3.7e-08   33.6   0.0    1.2  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
    2.4e-05   24.6   0.0    3.1e-05   24.2   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0025   17.5   0.0     0.0037   16.9   0.0    1.3  1  Acetyltransf_8  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   1.7e-19   7.8e-16       1     138 []      17     162 ..      17     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.7e-19
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpe.vmrylpepltleeaeewlera.....waeeseeeg..ygwaivl.kdtgviGsvglrdleeedee.aelgy 85 
                     RL++r + e+D+ +l+ ++++ + + +  p+++ +++++ + + +     + ++ +++g  + +++ + ++t+v G++++ ++       + lgy
      EHU01106.1  17 RLVVRLVHERDAWRLADYYAENRdFLK--PWEPVRDDSHCYPSGWqarlgLIADMHKQGsaFYFILMDsNETEVRGVANFSNVLCGAFHaCYLGY 109
                     999********9999975554443665..786666666444444344458444455555447777766677767*******988775557***** PP

  Acetyltransf_3  86 mlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      l+++++g+G++ ea++++++y+ +++ ++r++a++ ++N++S  +l +lGfe
      EHU01106.1 110 SLGEKWQGQGLMFEALQSAIRYMQRQQYIHRIMANYMPHNQRSGDLLARLGFE 162
                     ****************************************************7 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   8.3e-12   3.7e-08       1     154 [.      20     181 ..      20     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8.3e-12
  Acetyltransf_4   1 iraateeDakeilaiyaey.vvntait...feyev..ssveefe.kfleal.dsekeyvflvae..sdrivGyaylgqfkkrakdwkaelsvyla 85 
                     +r++ e+Da ++ + yae+ +  + ++    ++ +  +s  ++   +++++ +++  + f  ++  + ++ G a  +++   +  +++ l + l 
      EHU01106.1  20 VRLVHERDAWRLADYYAENrDFLKPWEpvrDDS-HcyPSGWQARlGLIADMhKQGSAFYFILMDsnETEVRGVANFSNVLC-GAFHACYLGYSLG 112
                     578888999999999988644555555664333.33344444445788888567778888888874456778888888877.99**********7 PP

  Acetyltransf_4  86 erdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                      ++ + +gl  e +++ + ++ ++q i++++a  +  n+ s +++++lGFe++g  k++  +ng+w D++
      EHU01106.1 113 -EKWQGQGLMFEALQSAIRYMqRQQYIHRIMANYMPHNQRSGDLLARLGFEKEGYAKNYLMINGQWQDHV 181
                     .789999999998888889998**********************************************98 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     7e-09   3.1e-05      35     117 .]      76     161 ..      36     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 7e-09
                     EEEEEET...TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  35 llvaeed...geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                     +++++ d    e+ G + ++ +      +a   ++   ++++g+Gl  + l+ +++++ ++++ ++i++   ++n+++  l+ +lGF
      EHU01106.1  76 FYFILMDsneTEVRGVANFSNVLC-GAFHACYLGYSLGEKWQGQGLMFEALQSAIRYMQRQQYiHRIMANYMPHNQRSGDLLARLGF 161
                     333222222244888887777777.5566666699999***********************888*****88899********99**9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.3e-07    0.0037      86     141 ..     111     165 ..      64     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.3e-07
                     ESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  86 igeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     +ge++  g+gl+ + l++ ++y+ +++ + r+++   ++N+r+  ll+++Gfeke+
      EHU01106.1 111 LGEKW-QGQGLMFEALQSAIRYMQRQQYIHRIMANYMPHNQRSGDLLARLGFEKEG 165
                     55555.59*********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1492.15
//
Query:       EHU01107.1  [L=214]
Description: uncharacterized DUF480 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-62  210.0   0.2    1.7e-62  210.0   0.2    1.8  2  DUF480        Protein of unknown function, DUF480
     0.0037   17.5   2.1      0.021   15.1   1.2    2.4  2  ABC_tran_CTD  ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.015   15.4   0.3      0.077   13.1   0.1    2.2  2  MbeD_MobD     MbeD/MobD like
       0.14   12.6   3.1        0.4   11.1   1.3    2.3  2  CLZ           C-terminal leucine zipper domain of cyclic nucl
       0.47   10.9   3.3       0.79   10.2   3.3    1.6  1  DUF4140       N-terminal domain of unknown function (DUF4140)
       0.79   10.1   5.7       0.98    9.8   1.0    2.7  3  Csm1_N        Csm1 N-terminal domain
        2.1    8.8   5.2        1.7    9.1   1.3    2.4  2  TSC22         TSC-22/dip/bun family
        3.8    7.8   6.1       0.74   10.1   1.8    2.1  3  Osmo_CC       Osmosensory transporter coiled coil


Domain annotation for each model (and alignments):
>> DUF480  Protein of unknown function, DUF480
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   0.2   7.4e-66   1.7e-62       1     149 []       5     158 ..       5     158 .. 0.98
   2 ?   -0.6   0.3      0.58   1.3e+03     116     135 ..     192     212 ..     159     214 .] 0.58

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 7.4e-66
                 B-HHHHHHHHHHHHHHHH-GGG-SEEHHHHHHHHT-SSS-SS-----HHHHHHHHHHHHHTTSEEEE..--SS--EEEE-HHHH....HT--HHHHHHH CS
      DUF480   1 LsaveaRvlgvLiEKeattPdqYPLslnalvaacNQkssRePvmelsesevqealdeLkkkklvseaseagsRvekyehrleea....lklseaelavl 95 
                 Lsa+  Rvlg+L+EK++ttP+qYPLsln++++acNQks+RePvm+lses+vq++ld L kk+lv+++s++g+Rv kye+r++++    l+ls+ae+avl
  EHU01107.1   5 LSAHALRVLGCLLEKQITTPEQYPLSLNGVLTACNQKSNREPVMTLSESDVQDQLDLLIKKHLVTANSGFGQRVVKYEQRFCNSafgnLQLSSAEVAVL 103
                 688999*****************************************************************************99999*********** PP

                 HHHHHH-SB-HHHHHHHHTTTS--SSHHHHHHHHHHHHHT...TSEEEE---TT- CS
      DUF480  96 alllLRGpqtageLrtrserlaefadveeveavLeelaeree.plvvklprepGk 149
                 +ll+LRG+qt+geLrtrs rl+efadv++ve++L++l++r+e p+v++l+repGk
  EHU01107.1 104 TLLFLRGAQTPGELRTRSGRLHEFADVSDVEQTLDTLMSRAEgPMVMRLAREPGK 158
                 ****************************************999***********6 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.58
                 TS--.SSHHHHHHHHHHHHHT CS
      DUF480 116 laef.adveeveavLeelaer 135
                 +  + ++v++++++L++l er
  EHU01107.1 192 IEALeQQVADLQEQLAQLLER 212
                 222213455566666666555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.47   1.1e+03      50      63 ..     130     143 ..     113     145 .. 0.83
   2 !   15.1   1.2   9.3e-06     0.021      12      33 ..     187     208 ..     170     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.47
  ABC_tran_CTD  50 leeleaeLeelyer 63 
                     ++e+ L++l++r
    EHU01107.1 130 VSDVEQTLDTLMSR 143
                   56789999999988 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 9.3e-06
  ABC_tran_CTD  12 eleaeIeaLEeeiaeleaelad 33 
                   +l ++IeaLE++ a+l+++la+
    EHU01107.1 187 ALRDRIEALEQQVADLQEQLAQ 208
                   5889****************96 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.81   1.8e+03      18      35 ..      80      95 ..      64     101 .. 0.71
   2 ?   13.1   0.1   3.4e-05     0.077      45      68 ..     182     209 ..     151     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.81
   MbeD_MobD 18 dYeqrlqeWesafaelqr 35
                +Yeqr    +saf +lq 
  EHU01107.1 80 KYEQRFC--NSAFGNLQL 95
                5666653..688888885 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.4e-05
   MbeD_MobD  45 a....aLseqvtgLsqQVesLseqvrRl 68 
                 +    aL+ +++ L qQV +L eq++ l
  EHU01107.1 182 TaddvALRDRIEALEQQVADLQEQLAQL 209
                 134449******************9876 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.41   9.3e+02      33      46 ..     130     143 ..     116     154 .. 0.79
   2 ?   11.1   1.3   0.00018       0.4      15      53 ..     176     212 ..     173     214 .] 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.41
         CLZ  33 verLessLeaLqtr 46 
                 v+ +e++L++L  r
  EHU01107.1 130 VSDVEQTLDTLMSR 143
                 66778888888776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00018
         CLZ  15 LDeeaakagaeqkeleekverLessLeaLqtrlarLlae 53 
                 L++ +  a a+   l +++e Le+++  Lq +la+Ll+ 
  EHU01107.1 176 LEQHP--ATADDVALRDRIEALEQQVADLQEQLAQLLER 212
                 55554..55688999*********************975 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.3   0.00035      0.79      62      94 ..     179     212 ..     121     214 .] 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
     DUF4140  62 aeeee.lkalraeleeledelaaledelaaaear 94 
                 +++++   alr+++e+le++ a+l+++la + +r
  EHU01107.1 179 HPATAdDVALRDRIEALEQQVADLQEQLAQLLER 212
                 22223379*******************9987655 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.17   3.7e+02      12      42 ..      56      84 ..      51      87 .. 0.77
   2 ?   -2.2   0.1       2.5   5.6e+03      14      24 ..      94     104 ..      92     106 .. 0.80
   3 ?    9.8   1.0   0.00044      0.98      41      64 ..     190     213 ..     182     214 .] 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
      Csm1_N 12 qerldsAdllvsk.lvhENsvLsqkletkdqe 42
                q++l   dll++k lv  Ns   q++ +++q+
  EHU01107.1 56 QDQL---DLLIKKhLVTANSGFGQRVVKYEQR 84
                4444...7999876999999998888877775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
      Csm1_N  14 rldsAdllvsk 24 
                 +l sA+++v  
  EHU01107.1  94 QLSSAEVAVLT 104
                 89999999965 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00044
      Csm1_N  41 qeiesLkeqlaeleekvkeleerr 64 
                 ++ie+L++q+a l+e++++l er+
  EHU01107.1 190 DRIEALEQQVADLQEQLAQLLERE 213
                 579999999999999999988876 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.35   7.8e+02       3      11 ..      62      70 ..      60      71 .. 0.87
   2 ?    9.1   1.3   0.00074       1.7      11      33 ..     187     209 ..     186     214 .] 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.35
       TSC22  3 LVKsHLmfA 11
                L+K+HL+ A
  EHU01107.1 62 LIKKHLVTA 70
                89****976 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00074
       TSC22  11 AVrEeVevLkekIkeLeernsel 33 
                 A r+ +e L +++++L+e+ ++l
  EHU01107.1 187 ALRDRIEALEQQVADLQEQLAQL 209
                 88999999********9999886 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.7   8.4e+03      21      33 ..     130     142 ..     129     146 .. 0.65
   2 ?   -3.7   0.1       6.6   1.5e+04      40      43 ..     177     180 ..     176     181 .. 0.79
   3 ?   10.1   1.8   0.00033      0.74      10      36 ..     188     214 .]     186     214 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHH CS
     Osmo_CC  21 vedideeIaaLee 33 
                 v d+++ +  L+ 
  EHU01107.1 130 VSDVEQTLDTLMS 142
                 5677777666665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.6
                 HH-- CS
     Osmo_CC  40 dqHP 43 
                 +qHP
  EHU01107.1 177 EQHP 180
                 7999 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00033
                 XXXXXTHHHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC  10 LqehYdnIEqkvedideeIaaLeekRq 36 
                 L+++ +  Eq+v d+ e++a+L e+ q
  EHU01107.1 188 LRDRIEALEQQVADLQEQLAQLLEREQ 214
                 666778899999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1576.38
//
Query:       EHU01108.1  [L=306]
Description: NAD-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-29  102.1   0.1    9.9e-29  100.6   0.1    1.8  3  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
     0.0096   16.5   0.0      0.039   14.5   0.0    1.9  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.042   13.5   0.0      0.082   12.5   0.0    1.4  1  Ketoacyl-synt_2  Beta-ketoacyl synthase, N-terminal domain
       0.17   12.2   1.1         29    5.0   0.0    3.2  3  DUF1611_N        Domain of unknown function (DUF1611_N) Rossm


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.1   2.2e-32   9.9e-29       1     120 []       3     120 ..       3     120 .. 0.98
   2 ?   -3.6   0.0         4   1.8e+04      21      42 ..     130     151 ..     122     168 .. 0.60
   3 ?   -2.2   0.0       1.6   7.1e+03      60      72 ..     241     253 ..     188     272 .. 0.63

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 2.2e-32
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   +r++++G+G i++k + p+  + +++++v++++p++++a+ v++++++ ++ +l +l+a  ++dav+v + + +h++++ka+l+agk+v+++KPla 
    EHU01108.1   3 IRIGVVGLGGIAQKAWLPVLSQANNWQLVGAFSPNQANARIVCDRYRITCFPSLTALAA--ACDAVFVHSSTASHYDVVKALLQAGKDVCVDKPLAE 97 
                   69*********999999999999************************************..************************************ PP

                   SHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvgy 120
                   t+++a++lv+laekk+++++v++
    EHU01108.1  98 TLNQAEALVALAEKKQRKLMVAF 120
                   ********************975 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
                   HTTTTEEEEEEECSSHHHHHHH CS
  GFO_IDH_MocA  21 esqrleevvalldpdaeraeav 42 
                   + + + + +a+l ++++r++ v
    EHU01108.1 130 QLKTQMHSAAALRIEKHRSDSV 151
                   4444446667777777776666 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                   CTTESEEEE-S-G CS
  GFO_IDH_MocA  60 dpeidavivatpn 72 
                   ++e+ a +v tp+
    EHU01108.1 241 QEECGAGVVLTPP 253
                   3356666666666 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.6e-06     0.039       1      86 [.       4      84 ..       4      92 .. 0.83
   2 ?   -1.7   0.0         1   4.5e+03       9      34 ..     100     122 ..      98     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.6e-06
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdal 86
                   +ig++G G +++   + +l++  ++ ++v a s+n+  a+   +++ +++++ +   +a+ +d v++   ++ + +v+++l   ++
     EHU01108.1  4 RIGVVGLGGIAQKAWLPVLSQA-NNWQLVGAFSPNQANARIVCDRYRITCFP-SLTALAAACDAVFVHSSTASHYDVVKAL---LQ 84
                   79*********98877777765.455666699********************.66666667*****************999...33 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                    HHHHHHHHHHHHTTS-GGCEEEEEES CS
  F420_oxidored   9 nmgealasgllaagaqpheivvansr 34 
                    n++eal+  + ++    ++++va +r
     EHU01108.1 100 NQAEALVALAEKKQ---RKLMVAFNR 122
                    77888887444444...777777666 PP

>> Ketoacyl-synt_2  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05     0.082     117     162 ..     101     144 ..      94     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
  Ketoacyl-synt_2 117 aallEAaallaegaekVLlvvadeplpeaYqefedeeelpyAlall 162
                      +   EA++ lae++++ L+v ++    + Yq+ +++ + + Al++ 
       EHU01108.1 101 Q--AEALVALAEKKQRKLMVAFNRRFAPCYQQLKTQMHSAAALRIE 144
                      4..4********************************9888888764 PP

>> DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.17   7.6e+02      33      56 ..       2      25 ..       1      27 [. 0.90
   2 ?    3.2   0.0     0.023     1e+02      53      88 ..      79     116 ..      70     117 .. 0.77
   3 ?    5.0   0.0    0.0065        29      60      93 ..     205     239 ..     202     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.17
   DUF1611_N 33 vlviGiapeggklpeswreavkeA 56
                ++ iG+   gg  +++w +++ +A
  EHU01108.1  2 TIRIGVVGLGGIAQKAWLPVLSQA 25
                57799999************9998 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.023
   DUF1611_N  53 vkeAleaGldvv..sGlHerLsddpelaalakkkgvki 88 
                 vk+ l+aG dv     l e L++ ++l+ala+kk++k+
  EHU01108.1  79 VKALLQAGKDVCvdKPLAETLNQAEALVALAEKKQRKL 116
                 45556888887633457889**************9998 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0065
   DUF1611_N  60 GldvvsGlHe.rLsddpelaalakkkgvkiiDvRk 93 
                 Gl v +++H    s+ ++++a+ + k ++i+D+R+
  EHU01108.1 205 GLQVTTSMHRrAGSQRERISAICDGKCIDIHDMRD 239
                 99********6668999****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2379.03
//
Query:       EHU01109.1  [L=512]
Description: putative peptidoglycan lipid II flippase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     8e-152  506.0  28.0   9.4e-152  505.7  28.0    1.0  1  MurJ             Lipid II flippase MurJ
    4.6e-10   39.7  14.0    4.6e-10   39.7  14.0    4.0  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> MurJ  Lipid II flippase MurJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.7  28.0    1e-155  9.4e-152       1     450 [.      28     478 ..      28     480 .. 0.99

  Alignments for each domain:
  == domain 1  score: 505.7 bits;  conditional E-value: 1e-155
        MurJ   1 iaallGaglladaFnvAfklPnllrrlfaegalssaFvPvlaeak.kkdeekaaefvrkvltllilvlllvtligilaapllirllatgf..deetlel 96 
                 +a+++Gag+++daF+vAfklPnllrr+faega+s+aFvP+lae+k k+ ee+++ fv++v++ll+l+l+lvt+ g++aap++i ++a+gf  ++++++l
  EHU01109.1  28 VARVFGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKsKQGEEATRLFVSYVSGLLTLALALVTVAGMVAAPWVILVTAPGFadTADKFAL 126
                 699******************************************999*******************************************99****** PP

        MurJ  97 avsllrillpylllvslsavfgavLnarkkFfapafsPvllNvsvIltllllanklgeeailaLaiGvliGgvlqllvqlpalkkaglllkprfafrde 195
                 +++llr ++py+ll+sl++++ga+Ln++++F +paf+P+llN+s+I ++l++a+ ++  +i+aLa++v++Gg+lql +qlp+lkk g+l+ pr++ rd+
  EHU01109.1 127 TSALLRVTFPYILLISLASLAGAILNTWNRFSVPAFAPTLLNISMIGFALFAAPHFH-PPIMALAWAVVVGGLLQLGYQLPHLKKLGMLVLPRINLRDA 224
                 *********************************************************.***************************************** PP

        MurJ 196 glkkflklllptllgvsvsqlnllvdtalAsflaegsvsilayadrilqlPlglfgvsistvlLPrlSrsakekdedevrdllsqairltllllipvsf 294
                 g+ ++++++ p++lgvsvsq++l+++t++Asfl +gsvs+++yadr++++P g++gv++ t+lLP+l++s+++++++e+ +l+++++rl++ll++p+++
  EHU01109.1 225 GVWRVMRQMGPAILGVSVSQISLIINTIFASFLVSGSVSWMYYADRLMEFPSGVLGVALGTILLPSLAKSFASGHHEEYSRLMDWGLRLCFLLALPSAV 323
                 *************************************************************************************************** PP

        MurJ 295 gllvlskpivsllferGnFseedveataevLaayalgLipyalvklllrvfYAredtktPvkislislvlnillsllllpplgvvglalatslsaligl 393
                  l +ls p++ +lf++G+F++ d+++t+++L ay++gL+ +++vk+l++ fY+r+d ktPvki++i+l+ ++l++l ++ pl+++gl+l+ +l+a++++
  EHU01109.1 324 ALGMLSGPLTVALFQYGKFTAFDAAMTQRALIAYSVGLMGLIVVKVLAPGFYSRQDIKTPVKIAIITLIATQLMNLAFIGPLKHAGLSLSIGLGACLNA 422
                 *************************************************************************************************** PP

        MurJ 394 vllyvllrkrlklteargiktflaklvvllalaavvilllssltqaewvvgslllil 450
                 +lly++lrk++ ++++ g++ fl +l+v+++++a+++ ++   +   w  g +l++l
  EHU01109.1 423 GLLYWQLRKKKIFQPQPGWAGFLIRLLVAVIVMAAALSGMLYWMP-DWEQGNMLWRL 478
                 *************************************99998777.89999999886 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.84   7.6e+03      30     102 ..      27      37 ..       7      61 .. 0.52
   2 ?   -1.6   0.2      0.29   2.6e+03      92     102 ..      94     104 ..      73     118 .. 0.47
   3 !    6.3  13.8    0.0011       9.4       2      86 ..     131     220 ..     130     291 .. 0.77
   4 !   39.7  14.0   5.2e-14   4.6e-10       2     141 ..     354     499 ..     353     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.84
  Polysacc_synt_C  30 ialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrllgiklellrrllkpllaalvmg 102
                      i++++                                                              ++++m+
       EHU01109.1  27 IVARV--------------------------------------------------------------FGAGMA 37 
                      22222..............................................................233332 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.29
  Polysacc_synt_C  92 lkpllaalvmg 102
                         l+ +++m+
       EHU01109.1  94 ALALVTVAGMV 104
                      11122222222 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0011
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfg..ivGaaiatvlallvvavlnlyalrrllgikl...e 86 
                      L++  ++i+++sl+++ ++iL+  +r   ++ a  +  +  +++ l+  p+f   i+  a+a v++ l+ + ++l +l++l  + l   +
       EHU01109.1 131 LRVTFPYILLISLASLAGAILNTWNRFSVPAFAPTLLNISMIGFALFAAPHFHppIMALAWAVVVGGLLQLGYQLPHLKKLGMLVLpriN 220
                      88999***********************************************8668***********************98877776651 PP

  == domain 4  score: 39.7 bits;  conditional E-value: 5.2e-14
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrllgikl..ellrrllk 93 
                      L  ++++++ l +  vl+  + +    k+++k+++i++++  ++nl +i  +   G ++++ l+ ++ a l+++ lr++  +++   +   l++
       EHU01109.1 354 LIAYSVGLMGLIVVKVLAPGFYSRQDIKTPVKIAIITLIATQLMNLAFIGPLKHAGLSLSIGLGACLNAGLLYWQLRKKKIFQPqpGWAGFLIR 447
                      788999999999999**********************************99*9*******************************998888889* PP

  Polysacc_synt_C  94 pllaalvmgivvylllllllglllla....alalllavlvgalvYlllllll 141
                      +l+a++vm++++ ++l++++   +++    +l l+l  +vg+ +Y+l+l ++
       EHU01109.1 448 LLVAVIVMAAALSGMLYWMPDWEQGNmlwrLLRLALVCAVGGGAYFLALGMM 499
                      ***********9999999998888887665567777778*******998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3590.04
//
Query:       EHU01110.1  [L=418]
Description: methyl-accepting chemotaxis protein III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-52  175.4  17.9    8.9e-52  175.4  17.9    3.3  4  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
     0.0029   18.0   1.1     0.0029   18.0   1.1    4.4  4  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
  ------ inclusion threshold ------
      0.023   15.1   0.7       0.58   10.6   0.0    3.4  3  HAMP           HAMP domain
        0.1   11.9   0.1        0.1   11.9   0.1    3.8  5  PhoU_div       Protein of unknown function DUF47
       0.48   10.5   9.5       0.98    9.5   3.4    2.8  2  Nup54          Nucleoporin complex subunit 54
       0.77    9.8   3.6        1.1    9.4   0.1    2.9  4  DUF4570        Domain of unknown function (DUF4570)
        1.6    9.0  26.4          2    8.7   0.7    5.4  5  DUF948         Bacterial protein of unknown function (DUF948)
        2.9    7.8  11.3        1.4    8.8   0.3    3.6  3  Synaptobrevin  Synaptobrevin
          3    8.4   7.6         16    6.1   0.3    3.8  4  PhoU           PhoU domain


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4      0.23   4.5e+02      89     122 ..      28      59 ..      11      68 .. 0.76
   2 !    9.8   0.8   0.00031      0.63     120     170 ..     128     178 ..     111     180 .. 0.78
   3 !  175.4  17.9   4.5e-55   8.9e-52       2     172 .]     192     348 ..     191     348 .. 0.98
   4 ?   -3.8   0.1       4.9   9.9e+03      19      37 ..     356     374 ..     350     379 .. 0.42

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.23
                 HHHHHHH..............HHHHHHHHHHHHH CS
   MCPsignal  89 keiealiieiqkeindsvesleetrqrveegsel 122
                 k++  l+++iq   ++s+++ ++++++v++g ++
  EHU01110.1  28 KDV--LMKAIQMRNQRSMDIKQQAVEQVKTGYTT 59 
                 444..66778999999999999999999999876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00031
                 HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 120 selveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 +++v   ++    i ++++e+a+  +++++ +e+q+as+e+++ ++e++++
  EHU01110.1 128 AQTVGAVRDGAIAIFQSAGEIASGNTDLSSRTEQQAASLEQTAASMEQLTA 178
                 34455555666679999*****************************99875 PP

  == domain 3  score: 175.4 bits;  conditional E-value: 4.5e-55
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 +la++ase+A++gg+ v+ vvk+m++i+ ssk+i++i++Vi++ia+Q N+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsaqaakeie li     
  EHU01110.1 192 QLASDASEKAQSGGEIVNRVVKTMDDISGSSKKIAEITSVINSIAFQMNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIEGLI----- 285
                 5799******************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                            ++  v++g+elv+++g+++ + v+a ++v+d+++eia++s+eq ++i++v++a++e+++vt
  EHU01110.1 286 ---------ATSVGLVNNGTELVSDAGTTMMKTVDAFQRVNDIISEIAVSSDEQNRGIQQVSHAITEMDAVT 348
                 .........88999*******************************************************986 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHHHHHHHH CS
   MCPsignal  19 anvvkqmeeieksskeisd 37 
                 +++ ++  ++e++++++++
  EHU01110.1 356 EEASAAAASLEDQADKLTK 374
                 3333333333444444333 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   5.4       1.5     3e+03      23      85 ..     128     185 ..     116     193 .. 0.47
   2 ?    0.3   0.1       0.5     1e+03      17      64 ..     206     253 ..     198     261 .. 0.68
   3 !   18.0   1.1   1.5e-06    0.0029       6      63 ..     261     321 ..     258     337 .. 0.85
   4 ?    0.2   2.6      0.51     1e+03      53      85 ..     345     377 ..     324     381 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
  T7SS_ESX_EspC  23 aaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAa 85 
                    a+++ ++++ a     a+ +s G i +  n+++++  + ++a++e++aa++++L + +++ A+
     EHU01110.1 128 AQTVGAVRDGA----IAIFQSAGEIAS-GNTDLSSRTEQQAASLEQTAASMEQLTATVKQNAD 185
                    33333333333....344444444433.45555555555555566666666555555555444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.5
  T7SS_ESX_EspC  17 akhdevaaeiasavaaaagasaavldshGpicaatn.davaaaeaarra 64 
                    + +++v++++++   ++ ++ a++++   +i +++n +a++aa++a ra
     EHU01110.1 206 EIVNRVVKTMDDISGSS-KKIAEITSVINSIAFQMNiLALNAAVEAARA 253
                    55677777777777777.7777777777777777774566666666553 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.5e-06
  T7SS_ESX_EspC   6 sVdpdhlrelaakhdevaaeiasavaaa...agasaavldshGpicaatndavaaaeaarr 63 
                     V+++++r+la++  ++a+ei+ + a++   +++++++++  G+  ++t da++ + +  +
     EHU01110.1 261 AVVASEVRSLAQRSAQAAKEIEGLIATSvglVNNGTELVSDAGTTMMKTVDAFQRVNDIIS 321
                    599**********************99944445678899999***********99987655 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.51
  T7SS_ESX_EspC  53 davaaaeaarraagealaaasteLadkLraAAa 85 
                    dav++  a+  ++++a aa++++ adkL++A a
     EHU01110.1 345 DAVTQQNASLVEEASAAAASLEDQADKLTKAVA 377
                    445555555556666666666666666666655 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00029      0.58       2      52 ..      78     128 ..      77     129 .. 0.90
   2 ?    0.6   0.1      0.38   7.6e+02      16      28 ..     144     158 ..     143     189 .. 0.62
   3 ?   -2.4   0.0       3.3   6.6e+03      12      21 ..     210     219 ..     208     236 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 l + +++PLr+    ++ ia+Gdl++++   gr+E G+L  ++ +M+ +L 
  EHU01110.1  78 LRKVVIKPLRQSLHRIDLIAHGDLTVPPSACGRNEPGMLLSNLQRMQSSLA 128
                 566789999999999999*********9999****************9986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.38
                 HHHHHTTT..BTSST CS
        HAMP  16 aarriaaG..dldtr 28 
                 +a +ia+G  dl++r
  EHU01110.1 144 SAGEIASGntDLSSR 158
                 577888886666666 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.3
                 HHHHHHHHHT CS
        HAMP  12 rLaraarria 21 
                 r++++++ i+
  EHU01110.1 210 RVVKTMDDIS 219
                 5566666554 PP

>> PhoU_div  Protein of unknown function DUF47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         2     4e+03      47      61 ..      11      25 ..       6      54 .. 0.58
   2 ?   -0.1   0.0      0.25   4.9e+02      82     105 ..     210     233 ..     205     254 .. 0.74
   3 ?   -2.6   0.0       1.5   2.9e+03     192     213 ..     265     286 ..     259     287 .. 0.81
   4 ?    5.9   0.2    0.0035         7     117     167 ..     303     350 ..     285     351 .. 0.79
   5 ?   11.9   0.1     5e-05       0.1      21      76 ..     334     390 ..     326     392 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
    PhoU_div 47 keiselEreADeikr 61
                +ei++ E  AD++ +
  EHU01110.1 11 EEIIADETVADKLDK 25
                455555555555543 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.25
    PhoU_div  82 elveslDeildvlediamlvtlrk 105
                 ++v+ +D+i  + ++ia + ++++
  EHU01110.1 210 RVVKTMDDISGSSKKIAEITSVIN 233
                 567888888888888887777665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.5
    PhoU_div 192 eklenvsdraedvadrisiill 213
                  ++  ++ r++++a++i+ +++
  EHU01110.1 265 SEVRSLAQRSAQAAKEIEGLIA 286
                 5788889999999999998876 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0035
    PhoU_div 117 lallkktveaiealaevieeleklletalskkdiveeieslEdeiDqlqrk 167
                    ++ktv+a++ ++++i e+    ++    +  ++++++   e+D + ++
  EHU01110.1 303 GTTMMKTVDAFQRVNDIISEIAVSSDEQ---NRGIQQVSHAITEMDAVTQQ 350
                 56799****************9544444...45799999999999988775 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 5e-05
    PhoU_div  21 setvlkliellkallegdyekveellkeiselEreADeikreir.lklekglflPvd 76 
                 ++ v  +i  + a+ + + + vee     ++lE +AD++++ +   kle+  ++P d
  EHU01110.1 334 IQQVSHAITEMDAVTQQNASLVEEASAAAASLEDQADKLTKAVAvFKLERAPLTPSD 390
                 5677888999*******************************9952689998888865 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.4   0.00049      0.98      28     106 ..     149     229 ..     147     286 .. 0.79
   2 ?    3.4   0.4     0.037        74      46     107 ..     328     388 ..     309     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00049
                 EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS--- CS
       Nup54  28 vkGFedLakRvkaQqkevaqhrerlkeisdrleele..qkhqletsvrlekakkrhvelshRllrllrkleilrsrgyald 106
                 + G  dL++R ++Q++ ++q    ++++   +++ +   +h  ++++   + ++   e+ +R+++ +  ++  +++   ++
  EHU01110.1 149 ASGNTDLSSRTEQQAASLEQTAASMEQLTATVKQNAdnAHHACQLASDASEKAQSGGEIVNRVVKTMDDISGSSKKIAEIT 229
                 56889*********************9999998887334677788888999999999999999999998887766655444 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---S CS
       Nup54  46 aqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilrsrgyalda 107
                 ++++  ++++s  ++e+  +  +++++ +e+a    + l+ +  +l++++ + +  + +l++
  EHU01110.1 328 DEQNRGIQQVSHAITEMD-AVTQQNASLVEEASAAAASLEDQADKLTKAVAVFKLERAPLTP 388
                 578888999999999999.9999999*************99999999999999888888876 PP

>> DUF4570  Domain of unknown function (DUF4570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.63   1.3e+03      11      37 ..      23      49 ..      13      62 .. 0.54
   2 ?   -2.8   0.0       3.3   6.5e+03      56      71 ..     115     130 ..     106     143 .. 0.72
   3 ?   -2.3   0.1       2.3   4.5e+03      32      32 ..     183     183 ..     153     233 .. 0.59
   4 ?    9.4   0.1   0.00053       1.1      35      84 ..     331     382 ..     313     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.63
     DUF4570 11 LskkheeiLaqRalLLqqmeseledqk 37
                L k + ++L +  ++ +q   + ++q 
  EHU01110.1 23 LDKAYKDVLMKAIQMRNQRSMDIKQQA 49
                444444444444444444444444433 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.3
     DUF4570  56 qllqdleaaekelkkr 71 
                  ll +l++++ +l + 
  EHU01110.1 115 MLLSNLQRMQSSLAQT 130
                 5888888888888765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.3
     DUF4570  32 e 32 
                 +
  EHU01110.1 183 N 183
                 1 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00053
     DUF4570  35 dqkk.kkasqaeaskaakkRNkqllqdleaaekelkkrakqlpe.pelvaLe 84 
                 ++   +  + ++ ++a+ + N++l+++  aa  +l+++a +l + + + +Le
  EHU01110.1 331 NRGIqQVSHAITEMDAVTQQNASLVEEASAAAASLEDQADKLTKaVAVFKLE 382
                 333314445678899***********************98776415566665 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.1      0.29   5.8e+02       2      23 ..      67      88 ..      59      99 .. 0.57
   2 ?    8.7   0.7     0.001         2      19      86 ..     115     182 ..     113     185 .. 0.94
   3 ?    7.2   1.8    0.0031       6.2      29      87 ..     167     225 ..     165     243 .. 0.69
   4 ?    3.3   4.5     0.051     1e+02      25      81 ..     264     320 ..     228     352 .. 0.66
   5 ?    4.7   1.0     0.018        36      35      74 ..     334     376 ..     320     380 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.29
      DUF948  2 AglIaAiAFvvLviflivvllk 23
                +++I+ +AF++L  ++i++l++
  EHU01110.1 67 SVVIVLLAFALLRKVVIKPLRQ 88
                3445555555555555555554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.001
      DUF948  19 vvllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvse 86 
                 ++l +l+++ +++a+t+  +++ + +i + + ++ +   +l +  +++ +++++  +++++l+++v++
  EHU01110.1 115 MLLSNLQRMQSSLAQTVGAVRDGAIAIFQSAGEIASGNTDLSSRTEQQAASLEQTAASMEQLTATVKQ 182
                 678999*********************************************************99976 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0031
      DUF948  29 deaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                 +++aa++e+l+  v++  ++++ + + + +  e  ++  e v+++++ + d++ s +++
  EHU01110.1 167 EQTAASMEQLTATVKQNADNAHHACQLASDASEKAQSGGEIVNRVVKTMDDISGSSKKI 225
                 56667777777777777777777766666666666666677777777777777665544 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.051
      DUF948  25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlg 81 
                 ++ ++++a++ ++  k++++++  + +l+++  el++d    + k    ++ v+d+ 
  EHU01110.1 264 ASEVRSLAQRSAQAAKEIEGLIATSVGLVNNGTELVSDAGTTMMKTVDAFQRVNDII 320
                 445556666666666666666666666666666666666666655555566665553 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.018
      DUF948  35 ieele...kqvdpilkevedllakvnelledvneklekvdplt 74 
                 i+++     ++d+++++ + l++++ + ++ ++++ +k+ + +
  EHU01110.1 334 IQQVShaiTEMDAVTQQNASLVEEASAAAASLEDQADKLTKAV 376
                 5555544467777777777777777777777777777665554 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.045        89      22      87 ..       9      74 ..       2      77 .. 0.69
   2 ?    1.2   0.3      0.16   3.2e+02       3      23 ..     164     184 ..     118     203 .. 0.62
   3 ?    8.8   0.3   0.00068       1.4       2      51 ..     331     380 ..     330     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.045
                   HHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin 22 NidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivi 87
                    ++++++ +   d+L++  ++  ++a q ++q     +++ ++++k   + +lv++i  ++i++++
     EHU01110.1  9 SFEEIIADETVADKLDKAYKDVLMKAIQMRNQRSMDIKQQAVEQVKTGYTTMLVAFIASVVIVLLA 74
                   567788888888999999999999999998775555555667777766666666666666665554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.16
                    XHHHHHHHHHHCCCCHHCCHH CS
  Synaptobrevin   3 dklakikaevdevkdimkeNi 23 
                     +l+++ a +++ + ++k+N 
     EHU01110.1 164 ASLEQTAASMEQLTATVKQNA 184
                    233344444444444444444 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00068
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHH CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFk 51 
                    n+ ++++   + e   ++++N   v e      +L+d++++L++    Fk
     EHU01110.1 331 NRGIQQVSHAITEMDAVTQQNASLVEEASAAAASLEDQADKLTKAVAVFK 380
                    7889**************************************99877776 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3    0.0079        16      26      61 ..       9      44 ..       2      63 .. 0.78
   2 ?   -0.3   0.0      0.78   1.5e+03      25      45 ..     206     228 ..     174     258 .. 0.60
   3 ?    2.7   0.0     0.088   1.7e+02      41      86 ..     278     324 ..     261     327 .. 0.66
   4 ?    0.5   0.1      0.44   8.8e+02      18      44 ..     346     376 ..     335     391 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0079
                HHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHGG-SHH CS
        PhoU 26 larevierddeidrlekeierslleal.akrqplaed 61
                  +e+i+++  +d+l k+ ++ l++a+ ++ ++ ++d
  EHU01110.1  9 SFEEIIADETVADKLDKAYKDVLMKAIqMR-NQRSMD 44
                569*******************9*999554.444443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHHHHHHHHHH..H CS
        PhoU  25 elarevierddeidrlekei..e 45 
                 e++++v++  d+i    k+i  +
  EHU01110.1 206 EIVNRVVKTMDDISGSSKKIaeI 228
                 44444444444444444444222 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHHHH.HGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU  41 ekeiersllealak.rqplaedlrellsllriardlERigDhavnia 86 
                  keie  + + ++  ++  +   ++ +++++ +    R+ D + +ia
  EHU01110.1 278 AKEIEGLIATSVGLvNNGTELVSDAGTTMMKTVDAFQRVNDIISEIA 324
                 4555555555555523333333456799*****************99 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.44
                 HHHCT-H...HHH.HHHHHHHHHHHHHHHHH CS
        PhoU  18 aleekdt...ela.revierddeidrlekei 44 
                 a+ +++    e a  +  +++d++d+l k++
  EHU01110.1 346 AVTQQNAslvEEAsAAAASLEDQADKLTKAV 376
                 5555554222334355567799999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2458  (0.137096); expected 358.6 (0.02)
Passed bias filter:                     1000  (0.0557756); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 2878.36
//
Query:       EHU01111.1  [L=143]
Description: FlgN family flagellar biosynthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-23   81.4   0.9      1e-22   81.2   0.9    1.0  1  FlgN      FlgN protein


Domain annotation for each model (and alignments):
>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.9   5.6e-27     1e-22       1     143 [.       1     132 [.       1     135 [. 0.96

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 5.6e-27
                 ...HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCTTCCHHHHHHHHHHH CS
        FlgN   1 MelleeLielleeelelleeLlelleeEteaLkag..dieaLeelleekqellekleqleqkrakllaelglsaeeatlsellakeedeelkelwqelk 97 
                 M   ++L+++l++ +e+l +L+++l+eE++ L++g  d + L++++e+k +ll +l+ l++ r+   + lg+s       +      +   +  w+ ++
  EHU01111.1   1 M---SNLLTTLDKMQEVLVSLATVLDEEEQQLSSGmiDSNNLQRITEDKSALLTTLNYLDEMRRSNEKSLGTS-------APY--RGQSDMARRWEGIQ 87 
                 5...789******************************************************************.......344..599999******** PP

                 HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHXXXX.XXXXXXXX CS
        FlgN  98 elleelkelnelNgrlieqslefnqrllnllqgaanksntYgadGk 143
                 + +++l+++n++Ng l+++++ f++ +l++l+++ ++   Yg+dGk
  EHU01111.1  88 QHTRRLHRANTHNGILLQHQITFTHDALDVLKPHQTQ-AFYGPDGK 132
                 *************************************.*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1122.92
//
Query:       EHU01112.1  [L=100]
Description: anti-sigma factor for FliA (sigma 28) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.8   0.9    2.7e-09   37.2   0.9    1.5  1  FlgM      Anti-sigma-28 factor, FlgM


Domain annotation for each model (and alignments):
>> FlgM  Anti-sigma-28 factor, FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.9   1.5e-13   2.7e-09       2      54 ..      43      90 ..      18      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.5e-13
        FlgM  2 sVeiSeaakalqkakqaaaaapevreekVaelKeaIasGtYqvdaekiAdkll 54
                +V++S+a  +l k       + +++ ++V++lK aI +G+ + d +kiAd l+
  EHU01112.1 43 QVSLSSAQAQLMKP-----GSQDINVQRVEQLKTAIRNGELKMDTGKIADALI 90
                56777666665222.....2348****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 776.76
//
Query:       EHU01113.1  [L=137]
Description: flagellar component of cell-proximal portion of basal-body rod [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-12   45.6   0.1    1.2e-11   44.3   0.0    1.8  2  Flg_bb_rod  Flagella basal body rod protein


Domain annotation for each model (and alignments):
>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   6.7e-16   1.2e-11       2      31 .]      10      39 ..       9      39 .. 0.94
   2 ?   -2.8   0.0      0.36   6.4e+03      14      20 ..      64      70 ..      62      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 6.7e-16
  Flg_bb_rod  2 rtavsALnaqqialdvianNiANanTtGyK 31
                 ++ +ALn ++++++++a+NiANa+T+Gy+
  EHU01113.1 10 HFGTEALNLRAQRQEILASNIANADTPGYQ 39
                57899************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.36
  Flg_bb_rod 14 aldvian 20
                al+v+++
  EHU01113.1 64 ALKVTSS 70
                8999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1032.31
//
Query:       EHU01114.1  [L=134]
Description: flagellar component of cell-proximal portion of basal-body rod [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-11   42.3   4.1    6.1e-11   42.3   4.1    1.9  1  Flg_bbr_C   Flagellar basal body rod FlgEFG protein C-termina
    2.6e-10   40.0   1.2    7.6e-10   38.5   1.2    1.8  1  Flg_bb_rod  Flagella basal body rod protein
  ------ inclusion threshold ------
       0.05   13.6   0.0      0.072   13.1   0.0    1.2  1  Caveolin    Caveolin


Domain annotation for each model (and alignments):
>> Flg_bbr_C  Flagellar basal body rod FlgEFG protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   4.1     1e-14   6.1e-11      29      74 .]      87     132 ..      38     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1e-14
   Flg_bbr_C  29 aqgflegSNVnlveemtnlieaqraYeanakvittademlqtalnl 74 
                 a+g++ + NV++v+e +n ++a+r+Y+an+ v++t+++m+ ++l+l
  EHU01114.1  87 AKGYVKMPNVDVVAETVNTMSASRSYQANVEVLNTVKSMMMKTLTL 132
                 479*************************************998865 PP

>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   1.2   1.3e-13   7.6e-10       1      30 [.       7      37 ..       7      37 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.3e-13
  Flg_bb_rod  1 LrtavsALnaqqialdvianNiANan.TtGy 30
                +++a sA++aq+++l+v a+N+ANa+ +tG+
  EHU01114.1  7 FDIAGSAMTAQSQRLNVSASNLANADsVTGP 37
                689**************************96 PP

>> Caveolin  Caveolin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.072      22      62 ..      91     131 ..      84     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
    Caveolin  22 lkvdFedviaEpdsthsfdkvwrlshavfevvkvliYrllt 62 
                 +k+   dv+aE   t s  + ++++ +v ++vk ++ + lt
  EHU01114.1  91 VKMPNVDVVAETVNTMSASRSYQANVEVLNTVKSMMMKTLT 131
                 677778******************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1074.09
//
Query:       EHU01115.1  [L=223]
Description: flagellar hook assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-23   81.4   2.4    6.4e-23   80.4   2.4    1.5  1  FlgD_ig          FlgD Ig-like domain
    9.6e-22   77.1  10.2    9.6e-22   77.1  10.2    1.9  2  FlgD             Flagellar hook capping protein - N-terminal 
    3.4e-16   59.2   0.0    1.3e-15   57.4   0.0    2.0  1  FLgD_tudor       FlgD Tudor-like domain
  ------ inclusion threshold ------
       0.03   14.8   0.1      0.066   13.7   0.1    1.5  1  MG2              MG2 domain
       0.13   11.9   0.0       0.21   11.2   0.0    1.4  1  DUF2271          Predicted periplasmic protein (DUF2271)
       0.23   11.5   4.1       0.42   10.7   2.4    2.4  2  Chlorovi_GP_rpt  Chlorovirus glycoprotein repeat
       0.46   10.7   8.2        5.3    7.3   0.1    3.0  2  He_PIG           Putative Ig domain


Domain annotation for each model (and alignments):
>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   2.4   2.5e-26   6.4e-23       3      78 ..     105     180 ..     103     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.5e-26
                 EEEE-SS--.EEEEEE.ESSSEEEEEEEE-SS--EEEEEEEEESSSEEEEEEE-SB-TTS-B--SEEEEEEEEEETT CS
     FlgD_ig   3 tisllgdge.aplgvelpeaadevtvtikDasGevVrtidlgaqsaGvvsftWdGtdndGnkladGaYtvkvtatsg 78 
                 +i l+g+g+ +p+gvel++aa+++t ti+Da+G+vV t+dlga  aGv++f+WdG+  dG+ ++dG+Y+v ++a+++
  EHU01115.1 105 QI-LVGKGTtTPFGVELTNAATTATATITDAQGNVVSTQDLGALTAGVHTFSWDGKLPDGSVAPDGKYKVAIAASNS 180
                 55.34444449***************************************************************986 PP

>> FlgD  Flagellar hook capping protein - N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1  10.2   3.8e-25   9.6e-22      14      75 .]      17      78 ..       8      78 .. 0.93
   2 ?   -2.5   0.1       2.6   6.7e+03      12      20 ..     125     133 ..     120     145 .. 0.42

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 3.8e-25
        FlgD 14 asrqtsdksegeltqddFLkLLtaqLknQDPlnPmDnnqmisQlaqfStveqveklndslgs 75
                +s++t +++++++ q++FL++L++qL+nQDP+nPmDn+q+++Qlaq++t+ ++ekln++lgs
  EHU01115.1 17 SSSSTGTSNSAQDLQNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGS 78
                6778888999999**********************************************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
        FlgD  12 aeasrqtsd 20 
                 ++a+++ +d
  EHU01115.1 125 TTATATITD 133
                 222222222 PP

>> FLgD_tudor  FlgD Tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   4.9e-19   1.3e-15       1      58 []      86     220 ..      86     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 4.9e-19
                 -HHHHTTCTTTSEEEEE...............................................................................TEE CS
                 xxxxxxxxxxxxxxxxx...............................................................................xxx RF
  FLgD_tudor   1 sQalqAasLiGkeVlvp...............................................................................Gts 20 
                 sQ+lq++ LiG++V+v+                                                                               G +
  EHU01115.1  86 SQSLQSSTLIGHGVMVNgsqilvgkgtttpfgveltnaattatatitdaqgnvvstqdlgaltagvhtfswdgklpdgsvapdgkykvaiaasnssG-Q 183
                 8*********************************************************************************************955.4 PP

                 EEE-EEEEEEEEEEEE.ETTEEEEEETTEE.EECCCB- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  FLgD_tudor  21 vaattlvygtVdsVslstggglmLnLglggtvplsdVr 58 
                 + a++l+y+ V++Vs+ +g++++L+Lg+ g+ +l+dVr
  EHU01115.1 184 QVAQPLNYAYVNGVST-AGNTAKLDLGTMGSATLDDVR 220
                 557*************.999999****9999******8 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.6e-05     0.066      34      86 ..     125     181 ..     106     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.6e-05
                 EEEEEEEE-TTSSEEEEEEEEE-CTTE..EEEEEE--TT..--SEEEEEEEEECSTT CS
         MG2  34 lplkltirdpdgkevkelplatdetgg..aesefalpea..aklGeysvelsadsae 86 
                 + +++ti+d++g++v++++l + ++g+  ++ + +lp++  a+ G+y+v + a++ +
  EHU01115.1 125 TTATATITDAQGNVVSTQDLGALTAGVhtFSWDGKLPDGsvAPDGKYKVAIAASNSS 181
                 7899****************888888744444446776533899******9444433 PP

>> DUF2271  Predicted periplasmic protein (DUF2271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.3e-05      0.21      73     109 ..     148     184 ..     127     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.3e-05
     DUF2271  73 apGkyklkvdekddklkklkaGkYklvvEaaredggr 109
                 ++G +++++d+k  +++  ++GkYk+ + a+   g++
  EHU01115.1 148 TAGVHTFSWDGKLPDGSVAPDGKYKVAIAASNSSGQQ 184
                 79**************************998877765 PP

>> Chlorovi_GP_rpt  Chlorovirus glycoprotein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.9   9.9e+03       5       9 ..     102     106 ..      94     108 .. 0.76
   2 ?   10.7   2.4   0.00016      0.42       6      31 ..     117     141 ..     117     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.9
  Chlorovi_GP_rpt   5 NGsfL 9  
                      NGs++
       EHU01115.1 102 NGSQI 106
                      77776 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
  Chlorovi_GP_rpt   6 GsfLtgvtatiPgtqniDIiGNVvat 31 
                      G+ Lt+  +t ++t++ D +GNVv+t
       EHU01115.1 117 GVELTNAATTATATIT-DAQGNVVST 141
                      789****999888875.*******97 PP

>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.0     0.032        82      18      36 ..      72     111 ..      65     136 .. 0.71
   2 ?    7.3   0.1    0.0021       5.3      24      49 .]     153     182 ..     147     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.032
      He_PIG  18 LdsstGtitGtpdqtvap......................G 36 
                 L+++ G+i+G++++++                        G
  EHU01115.1  72 LNTTLGSISGQISTSQ-SlqsstlighgvmvngsqilvgkG 111
                 79**********9994.345555555555555555555554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
      He_PIG  24 titGt...pdqtvap.GsytftVtatdgsg 49 
                 t++++   pd +vap G y + + a+++sg
  EHU01115.1 153 TFSWDgklPDGSVAPdGKYKVAIAASNSSG 182
                 78999999*******99*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1724.72
//
Query:       EHU01116.1  [L=415]
Description: flagellar hook protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-22   78.6   2.0    2.8e-22   78.6   2.0    2.8  3  Flg_bbr_C   Flagellar basal body rod FlgEFG protein C-termina
    5.2e-16   59.3  10.7    5.2e-16   59.3  10.7    2.7  3  FlaE        Flagellar basal body protein FlaE
    5.9e-10   38.9   2.3    5.9e-10   38.9   2.3    3.2  2  Flg_bb_rod  Flagella basal body rod protein


Domain annotation for each model (and alignments):
>> Flg_bbr_C  Flagellar basal body rod FlgEFG protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.1   6.4e+03      31      48 ..      41      58 ..      15      60 .. 0.65
   2 ?   -2.1   0.0      0.72   4.3e+03      50      60 ..     224     234 ..     194     239 .. 0.71
   3 !   78.6   2.0   4.7e-26   2.8e-22       2      74 .]     337     414 ..     336     414 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
   Flg_bbr_C 31 gflegSNVnlveemtnli 48
                 +  gSNV l +  +  i
  EHU01116.1 41 DMFAGSNVGLGTKVAAVI 58
                466788888777766666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.72
   Flg_bbr_C  50 aqraYeanakv 60 
                 +q +++an k+
  EHU01116.1 224 YQMSFDANGKL 234
                 67777777776 PP

  == domain 3  score: 78.6 bits;  conditional E-value: 4.7e-26
   Flg_bbr_C   2 glekggdnlyrets..gapilgadadg...kvaqgflegSNVnlveemtnlieaqraYeanakvittademlqtalnl 74 
                 gl+++gdn+  +ts  g+p +g++++g   +++ g+le+SNV++ +e++n+i+aqr+Y+ana++i+t+d++l t++nl
  EHU01116.1 337 GLQSKGDNVWSATSasGQPAIGVANTGtfgSLTAGALEASNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVNL 414
                 8*********998899***999988888889********************************************997 PP

>> FlaE  Flagellar basal body protein FlaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.6     0.081   4.8e+02      52     114 ..      70     150 ..      23     157 .. 0.60
   2 !   59.3  10.7   8.7e-20   5.2e-16       2     122 .]     173     296 ..     172     296 .. 0.80
   3 ?   -1.7   0.2      0.69   4.1e+03      57      71 ..     361     375 ..     307     406 .. 0.48

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.081
        FlaE  52 a.............atalstgtltFdssGkltsvsaetlase.s.sleaaasst.............ntqtitldfgllkgstqyasafsv 114
                                 + s g + ++ +G+++  ++ +l++  + ++      t              ++ ++l++     +tq+a++ ++
  EHU01116.1  70 SrgldvalsgngffRLTDSAGAVFYSRNGQFKLDENRNLVNAqGlNV------TgypasgvpptiqaGANAVSLSI----PTTQMAARATT 150
                 24444444444455455667777788888877766666555532221......02222334444433333333333....56888875555 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 8.7e-20
        FlaE   2 ndpttynsstsvtvYDslGnsheltlyFvktgtpntWevyvtvDgkevdaaatalstgtltFdssGkltsvsaetlase..s.sleaaasst....... 90 
                 +d+tt + +++++++D++Gnsh+++ly+vkt+ +ntW+v++  D     + ++a    +++Fd++Gkltsvs+ t a      +++++   t       
  EHU01116.1 173 SDETTRSAKSTISMFDTQGNSHNVDLYYVKTA-NNTWNVHAV-DS----TVGSAVGNYQMSFDANGKLTSVSQITAAGAivPgTTTDS---Tatlpltg 262
                 6999****************************.8******99.66....25899999*************887777666542222222...12346788 PP

        FlaE  91 ....ntqtitldfgllkgstqyasafsv.nsltqdGY 122
                     n +t++l+f    gs q ++  s+  s tq+GY
  EHU01116.1 263 angaNGTTVALNF---VGSQQQNTGASTfGSPTQNGY 296
                 8887889999999...6777777655555*******9 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.69
        FlaE  57 stgtltFdssGklts 71 
                 +tgt    ++G l+ 
  EHU01116.1 361 NTGTFGSLTAGALEA 375
                 222222222333333 PP

>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   2.3   9.9e-14   5.9e-10       2      31 .]       4      33 ..       3      33 .. 0.96
   2 ?   -0.8   2.2      0.27   1.6e+03      16      27 ..     148     161 ..     141     162 .. 0.67

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 9.9e-14
  Flg_bb_rod  2 rtavsALnaqqialdvianNiANanTtGyK 31
                 +avs+L a++ +ldvi+nNiAN+ T G+K
  EHU01116.1  4 SQAVSGLGAASSNLDVIGNNIANSATAGFK 33
                68***************************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.27
  Flg_bb_rod  16 dvianN.iANan.T 27 
                 +++++N +AN+n T
  EHU01116.1 148 ATTTSNlVANLNsT 161
                 45666636**9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3306.22
//
Query:       EHU01117.1  [L=252]
Description: FlgF family flagellar basal-body rod protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-22   79.4   4.1    1.8e-22   79.3   1.4    2.3  2  Flg_bbr_C   Flagellar basal body rod FlgEFG protein C-termina
    3.3e-10   39.7   1.5    3.3e-10   39.7   1.5    2.7  3  Flg_bb_rod  Flagella basal body rod protein
  ------ inclusion threshold ------
      0.058   12.8   0.0        0.1   12.1   0.0    1.4  1  IglC        Intracellular growth locus C protein


Domain annotation for each model (and alignments):
>> Flg_bbr_C  Flagellar basal body rod FlgEFG protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.25   1.5e+03      23      37 ..      11      25 ..       3      27 .. 0.65
   2 !   79.3   1.4     3e-26   1.8e-22       2      74 .]     170     247 ..     169     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
   Flg_bbr_C 23 dadgkvaqgflegSN 37
                +a++++ q+++ +SN
  EHU01117.1 11 AASQTLDQQAVTASN 25
                344578888888887 PP

  == domain 2  score: 79.3 bits;  conditional E-value: 3e-26
   Flg_bbr_C   2 glekggdnlyrets......gapilgadadgkvaqgflegSNVnlveemtnlieaqraYeanakvittademlqtalnl 74 
                 +le+g+d+++r t+      ga+ l+ad++ +v+ g+legSNV +ve m+++i+++r +e+++kvi+++d++ q+a++l
  EHU01117.1 170 ELERGDDGMFRPTAatqatrGAA-LQADPTIQVMPGVLEGSNVKPVETMVDMIANARRFEMQMKVINNVDQNEQKANQL 247
                 699*******8888877777776.8899999**********************************************97 PP

>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   1.5   5.6e-14   3.3e-10       1      31 []       5      35 ..       5      35 .. 0.97
   2 ?   -2.0   0.0      0.62   3.7e+03       5      17 ..      68      80 ..      66      81 .. 0.84
   3 ?   -3.1   0.1       1.3     8e+03      16      20 ..     219     223 ..     218     224 .. 0.57

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 5.6e-14
  Flg_bb_rod  1 LrtavsALnaqqialdvianNiANanTtGyK 31
                ++ta++A +++  +++v+a+N+ANa+T+G++
  EHU01117.1  5 IYTAMGAASQTLDQQAVTASNLANASTPGFR 35
                79****************************6 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.62
  Flg_bb_rod  5 vsALnaqqialdv 17
                ++A+  +q+ ldv
  EHU01117.1 68 QGAMDYTQRPLDV 80
                7899999999998 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.3
  Flg_bb_rod  16 dvian 20 
                 d+ian
  EHU01117.1 219 DMIAN 223
                 55665 PP

>> IglC  Intracellular growth locus C protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05       0.1      83     135 ..     195     246 ..     167     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
                 SS-EEEEEEEEEEEHHHHHHHHHHHHHHHHCHGGG--EEE--B-S--EE-TTS CS
        IglC  83 inptisitlgvliksnvrtkieekvssilqasatdmkiklgnsnkkqeyktde 135
                  +pti +  gvl  snv+  +e  v  i +a   +m++k+ n   ++e k+++
  EHU01117.1 195 ADPTIQVMPGVLEGSNVK-PVETMVDMIANARRFEMQMKVINNVDQNEQKANQ 246
                 58***************8.59*********************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1941.17
//
Query:       EHU01118.1  [L=260]
Description: flagellar component of cell-distal portion of basal-body rod [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-25   88.3   3.3    4.3e-25   87.6   1.5    2.3  2  Flg_bbr_C   Flagellar basal body rod FlgEFG protein C-termina
    2.3e-13   49.7   0.9    7.3e-13   48.1   0.9    2.0  1  Flg_bb_rod  Flagella basal body rod protein
  ------ inclusion threshold ------
        0.1   12.5   4.6        1.3    8.9   4.5    2.3  2  BclA_C      BclA C-terminal domain


Domain annotation for each model (and alignments):
>> Flg_bbr_C  Flagellar basal body rod FlgEFG protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.84     5e+03      10      41 ..      45      75 ..      42      77 .. 0.59
   2 !   87.6   1.5   7.3e-29   4.3e-25       1      74 []     182     260 .]     182     260 .] 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
   Flg_bbr_C 10 lyretsgapilgadadgkvaqgflegSNVnlv 41
                +y +t  +p  ++ ++ ++ +g + g +V +v
  EHU01118.1 45 MY-QTMRQPGTQSSEQTTLPSGLQIGTGVRPV 75
                45.33334434455666788888888888776 PP

  == domain 2  score: 87.6 bits;  conditional E-value: 7.3e-29
   Flg_bbr_C   1 aglekggdnlyrets..gapilga.dadg..kvaqgflegSNVnlveemtnlieaqraYeanakvittademlqtalnl 74 
                 agl ++g+nly+et+  gap+  + +++g   ++qg+ e+SNVn++ee++ +i++qraYe n+k+i+t+d+ml ++ +l
  EHU01118.1 182 AGLDSVGENLYKETQasGAPTDSTpGQNGagLLYQGYTETSNVNVAEELVTMIQTQRAYEINSKAISTSDQMLAKLTQL 260
                 589*********99999999755568888778*******************************************9987 PP

>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.9   1.2e-16   7.3e-13       1      31 []       5      35 ..       5      35 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.2e-16
  Flg_bb_rod  1 LrtavsALnaqqialdvianNiANanTtGyK 31
                L++a+++L aqq ++dvianN+AN++T+G+K
  EHU01118.1  5 LWIAKTGLDAQQMNMDVIANNLANVSTNGFK 35
                89****************************9 PP

>> BclA_C  BclA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.5   0.00022       1.3      11     108 ..      66     173 ..      57     183 .. 0.71
   2 ?    8.0   0.6   0.00044       2.6      28      73 ..     137     184 ..     131     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00022
      BclA_C  11 iavvlggtpvplpnnqnlsgitvnatnttftvneaGrYyisYqvnttaa.llvslrllvngvavpgs.......tvtpalst.sslsasvivtlta.gd 99 
                 +++  g  pv     +++++ +++ +++ + +n  G+++i+    t+a    +s+++ +ng  v++        ++ pa++t  ++s + +v++t  g+
  EHU01118.1  66 LQIGTGVRPVTTERLHTQGNLSQTNNSKDIAINGQGFFQIQMPDGTSAYtRDGSFQVDQNGQLVTNAgfpvqpgITIPANATsITVSRDGVVSVTQqGQ 164
                 55666667788888888999999999999***********99999999855899999999977766655555556667766645778888888887555 PP

      BclA_C 100 tislqlfgl 108
                 t   q+ +l
  EHU01118.1 165 TQAAQVGQL 173
                 544444333 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00044
      BclA_C  28 lsgitvnatnttftvneaGrYyisYqvnttaa.l.lvslrllvngvav 73 
                 + git+ a++t++tv + G+ +++ q +t aa +  ++l+ ++n++ +
  EHU01118.1 137 QPGITIPANATSITVSRDGVVSVTQQGQTQAAqVgQLTLSTFMNNAGL 184
                 459*************************99995345666666676655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2093.86
//
Query:       EHU01119.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01119.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01119.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01119.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01119.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01119.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01119.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01119.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01119.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01119.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01119.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01119.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01119.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01119.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01119.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01119.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01119.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01119.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2372.10
//
Query:       EHU01120.1  [L=236]
Description: flagellar protein of basal-body outer-membrane L ring [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-59  199.7   0.3    2.8e-59  199.5   0.3    1.0  1  FlgH      Flagellar L-ring protein


Domain annotation for each model (and alignments):
>> FlgH  Flagellar L-ring protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.3   1.6e-63   2.8e-59       4     168 .]      50     235 ..      47     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 1.6e-63
        FlgH   4 ngSlfqeass....arslfedrrarrvGDiltvvieestsasksastktsrsssas.................kaskslgasssssfkgkgstsrsnsl 81 
                 ngS+fq  +     +++lfedrr+r++GD+lt++++e+ sasks+++++sr++s s                 ++++++ a+++++f+gkg +s++n++
  EHU01120.1  50 NGSIFQGVAPlnygYQPLFEDRRPRNIGDTLTITLQENVSASKSSTSNASRNGSGSlgitavptgleglagatGEKANFAAGGKNDFAGKGGASANNTF 148
                 8999997766777899*************************************6667777888888888888888999********************* PP

        FlgH  82 tgtitvtVvevlpnGnLvieGekevrvnqekevirlsGiVrpedIsadNtvsstriAdarIeykgkGaladaqqpgwlarfldsvlp 168
                 tgtitvtV +vl+nGnL + Gek++++nq++e+ir+sG+V+p++Isa+N+v st +AdarIey g+G++++aq++gwl+rf+ +++p
  EHU01120.1 149 TGTITVTVDQVLSNGNLHVVGEKQIEINQGTEFIRFSGVVNPRTISASNAVLSTAVADARIEYVGNGYINEAQNMGWLQRFFLNISP 235
                 ***********************************************************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1834.41
//
Query:       EHU01121.1  [L=369]
Description: putative flagellar basal body protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.2e-134  446.3  19.1   7.1e-134  446.1  19.1    1.0  1  FlgI        Flagellar P-ring protein
  ------ inclusion threshold ------
      0.015   15.7   0.0      0.063   13.7   0.0    2.1  1  Propep_M14  Carboxypeptidase activation peptide


Domain annotation for each model (and alignments):
>> FlgI  Flagellar P-ring protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.1  19.1    8e-138  7.1e-134       2     343 .]      26     368 ..      25     368 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.1 bits;  conditional E-value: 8e-138
        FlgI   2 ikdiasiegvrenqLvGyGLVvGLngtGDkkkqtkfteqslknmlerlgvkveeke.kklknvAaVmvtAelppfakkGqkidvtVssigdAksLeGGt 99 
                 i+d+++++gvr+nqL+GyGLVvGL+gtGD+++qt+ft+q+++nml++lg++v++++ ++lknvAaVmvtA+lp fa++Gq++dv+Vss+g+AksL+GGt
  EHU01121.1  26 IRDLTTVQGVRDNQLLGYGLVVGLDGTGDQTTQTPFTTQTVSNMLSQLGITVPPGTnMQLKNVAAVMVTARLPSFARQGQTLDVVVSSMGNAKSLRGGT 124
                 89**************************************************999967***************************************** PP

        FlgI 100 LlltpLkgadgevyAvAqGslvvgglsaeeakgssvtknvptagripnGaiverevptelkkkkeltlslkepdfttakriadainkelgekvAkavda 198
                 Ll+tpLkg+d++vyA+AqG+++vgg++a+ a gssv++n+ + gri++Ga+vere+++++ ++++++l+l+++df++a+riadain++ g + A+++da
  EHU01121.1 125 LLMTPLKGVDNQVYALAQGNILVGGAGAA-AGGSSVQVNQLNGGRITDGATVERELQSNFGSQNTINLQLNTEDFSMAQRIADAINARGGYGSAQPLDA 222
                 ***************************66.99******************************************************************* PP

        FlgI 199 rtvevklpedleeerveflaevenlevep.dakarvvinertgtvVigenvrisevavshgnltvkikeepevsqp.aplsegetvvvpeteieveeek 295
                 rtv+v++ ++ ++++v++lae++n++v++  ++a+v+in+rtg+vV++++v+++++av++gnl+v+++++++vsqp +pl++g+tv +++t+i+++++ 
  EHU01121.1 223 RTVQVRVSPN-NGAQVRLLAEIQNIDVSVpVEDAKVIINSRTGSVVMNREVKLNTCAVAQGNLSVTVNQQQNVSQPnTPLAGGQTVATTNTQIDLRQSG 320
                 ********99.8****************98999*******************************************789******************** PP

        FlgI 296 aklvvleegatlsdlvkaLnalgvtprdliaiLqalkaaGaLqAelev 343
                 ++l  ++++a+l+++v+aLnalg++p +l++iLq++++aG+L+A+le+
  EHU01121.1 321 GALQRVNSSANLNSVVRALNALGASPIELMSILQSMQSAGCLRAKLEI 368
                 **********************************************98 PP

>> Propep_M14  Carboxypeptidase activation peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.1e-06     0.063      34      71 ..     223     260 ..     212     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.1e-06
  Propep_M14  34 epvdilVppekledfeelLeslgisyevlieDvqklid 71 
                 ++v+++V+p++ ++++ l e ++i+++v +eD++  i+
  EHU01121.1 223 RTVQVRVSPNNGAQVRLLAEIQNIDVSVPVEDAKVIIN 260
                 679*****************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3005.90
//
Query:       EHU01122.1  [L=314]
Description: muramidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-21   75.6   0.7    5.5e-21   74.9   0.7    1.4  1  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc
    2.2e-15   56.9   0.4    2.2e-15   56.9   0.4    2.4  3  Rod-binding      Rod binding protein


Domain annotation for each model (and alignments):
>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.7   6.1e-25   5.5e-21       3      86 ..     160     296 ..     158     297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 6.1e-25
                      HHHHHHHHCT.-HHHHHHHHHHHHTTTTCHHHHH....CT-TSE.B...........................HCTE-SSHHHHHHHH.SHHHH CS
  Glucosaminidase   3 aaleaakkygippsvalaqaalEsgwgtsrlake....qnNlfGik...........................kfrkydsveesirah.kllss 64 
                       a++a++++gip  ++laqaalEsgwg+ ++ +     ++N+fGik                           +fr y+s+ e+++++ klls+
       EHU01122.1 160 PAQAASQQSGIPHHLILAQAALESGWGQRQILTRdgkpSYNVFGIKasgnwkgettdimtteyehgeakkvraTFRVYSSYFEALNDYvKLLSN 253
                      68999**********************77555555777*******777888888888888988889898888889*************889997 PP

                      .......HCC...............HECECTHCCHHHHHHHHCT CS
  Glucosaminidase  65 .......skk...............yatdpaYaekliaiikklk 86 
                             + +               yatdp+Ya+kl+ +i+++k
       EHU01122.1 254 npryaavT-NaqsaeqgaqalqaagYATDPKYAQKLMGMIQQFK 296
                      66655551.05566777888888899**************9976 PP

>> Rod-binding  Rod binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3         2   1.8e+04      23      31 ..      39      47 ..      34      47 .. 0.56
   2 !   56.9   0.4   2.5e-19   2.2e-15       1      51 []      49      95 ..      49      95 .. 0.94
   3 ?   -3.0   0.2       1.3   1.1e+04      32      42 ..     161     170 ..     157     170 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
  Rod-binding 23 frdmldqql 31
                  + m+ q++
   EHU01122.1 39 VEGMFVQMM 47
                 455666654 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 2.5e-19
  Rod-binding  1 KsMrkavpkedglfggsaaedmfrdmldqqlAksmakngggiGLAdmlyrQ 51
                 KsMr+a p+ dg ++ ++++++f++m+dqq+A+++ k  +g+GLAd +++Q
   EHU01122.1 49 KSMREALPQ-DGILS-NEQTKLFTSMYDQQIAQDIGK--RGLGLADIIVKQ 95
                 9*****766.9****.9999****************9..68*********9 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.3
  Rod-binding  32 Aksmakngggi 42 
                  A++ ++++ gi
   EHU01122.1 161 AQAASQQS-GI 170
                  88999875.75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2664.94
//
Query:       EHU01123.1  [L=546]
Description: flagellar hook-filament junction protein 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-08   32.6   4.7    6.4e-08   32.6   4.7    3.6  3  Flg_bbr_C   Flagellar basal body rod FlgEFG protein C-termina
    1.3e-06   28.2   6.1    1.3e-06   28.2   6.1    4.2  5  Flg_bb_rod  Flagella basal body rod protein
  ------ inclusion threshold ------
       0.32   11.0   6.1        0.4   10.7   1.7    2.5  2  DUF1664     Protein of unknown function (DUF1664)
       0.72    9.9   3.9       0.79    9.8   0.2    2.9  2  CooC_C      CS1-pili formation C-terminal


Domain annotation for each model (and alignments):
>> Flg_bbr_C  Flagellar basal body rod FlgEFG protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5      0.86   3.8e+03      30      47 ..      87     106 ..      61     133 .. 0.56
   2 ?   -1.3   0.8      0.55   2.5e+03      53      60 ..     143     150 ..     104     178 .. 0.66
   3 !   32.6   4.7   1.4e-11   6.4e-08      20      73 ..     488     544 ..     465     545 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.86
   Flg_bbr_C  30 qgflegSNVn..lveemtnl 47 
                  ++  +SN++  + +  t+l
  EHU01123.1  87 TQYSQVSNIDdlMSTSTTSL 106
                 45666666654333444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.55
   Flg_bbr_C  53 aYeanakv 60 
                 +++++a+ 
  EHU01123.1 143 QFQTQAQY 150
                 34444444 PP

  == domain 3  score: 32.6 bits;  conditional E-value: 1.4e-11
   Flg_bbr_C  20 lga.dadg..kvaqgflegSNVnlveemtnlieaqraYeanakvittademlqtaln 73 
                 + + ++++  ++++  +++S+Vnl+ee +nl ++q+ Y ana+v+++a + ++++l+
  EHU01123.1 488 ASTtQQNVvtQLTNRQQSVSGVNLDEEYANLTKYQQYYMANAQVLKAASTVFDALLS 544
                 222234448899***************************************999876 PP

>> Flg_bb_rod  Flagella basal body rod protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   6.1     3e-10   1.3e-06       1      30 [.       5      34 ..       5      34 .. 0.96
   2 ?   -2.1   0.6      0.87   3.9e+03       5      19 ..     121     135 ..     115     136 .. 0.51
   3 ?   -2.7   0.7       1.4   6.2e+03      10      20 ..     155     165 ..     153     166 .. 0.82
   4 ?   -2.4   0.3       1.1   4.9e+03      15      26 ..     169     180 ..     167     180 .. 0.74
   5 ?   -3.2   0.1         2     9e+03      12      18 ..     490     496 ..     484     497 .. 0.60

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 3e-10
  Flg_bb_rod  1 LrtavsALnaqqialdvianNiANanTtGy 30
                ++ a+s+L+a+q+al +++nNi+N+ + Gy
  EHU01123.1  5 INSAMSGLSAAQAALSTTSNNISNYTVAGY 34
                689***********************9999 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.87
  Flg_bb_rod   5 vsALnaqqialdvia 19 
                 vs  n+ ++++ +++
  EHU01123.1 121 VSNANDPAARQSMLS 135
                 333445555555555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.4
  Flg_bb_rod  10 aqqialdvian 20 
                 +++ + dv an
  EHU01123.1 155 QNSVNTDVAAN 165
                 57789999998 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.1
  Flg_bb_rod  15 ldvianNiANan 26 
                 +++ ++ iAN+n
  EHU01123.1 169 INTFTSQIANLN 180
                 56667779**98 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2
  Flg_bb_rod  12 qialdvi 18 
                  ++++v+
  EHU01123.1 490 TTQQNVV 496
                 3567776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7     9e-05       0.4      28     118 ..      95     184 ..      89     190 .. 0.74
   2 ?    1.7   0.2     0.057   2.5e+02      79     120 ..     465     506 ..     449     512 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9e-05
     DUF1664  28 lsdlmfvTkrslsdavesvskqleqvsesla..atkrhLssridrvdkkldeqkeiskeikeevt.evredlseigedvesvkeavegleskle 118
                 + dlm     sls+a++   +++++v ++ +  a+++ + s+ + + ++ + q++  +++++ v+ +v  ++++i++  +++ +    l+++++
  EHU01123.1  95 IDDLMSTSTTSLSSAIQGFFSNMQNVVSNANdpAARQSMLSNSQGLVNQFQTQAQYLTNLQNSVNtDVAANVDQINTFTSQIAN----LNQQIA 184
                 689***********************9888733589999999999999999999888888887742455565555544444333....333333 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.057
     DUF1664  79 keiskeikeevtevredlseigedvesvkeavegleskleri 120
                 + +s++  + v++v ++++++++ +++ +++v++l ++ +++
  EHU01123.1 465 STLSQAYGAMVSTVGNKTQALKTASTTQQNVVTQLTNRQQSV 506
                 566777788888888888888888888888888888776665 PP

>> CooC_C  CS1-pili formation C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00018      0.79      28      88 ..     202     260 ..     175     263 .. 0.79
   2 ?   -0.8   0.2      0.35   1.6e+03      30      77 ..     454     503 ..     448     513 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
      CooC_C  28 gqplanakilnhagvavteedGvFtlevdakapsltvengdtlyeveldlertrdevvlvG 88 
                  q++++   +n +gv+v+++dG +t++++++       +  +++ ++ +++ tr ++ +v+
  EHU01123.1 202 DQLVNG--LNNIVGVTVSQQDGSYTVSMANGTSLVNGYQTTKMVAMPSNSDITRTTIGYVD 260
                 555555..46889***************887776666666668888888888888888876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.35
      CooC_C  30 planakilnhagvavteedGvFtlevdakapsltvengdt...lyeveldl 77 
                 +l++aki+n+ ++  +++ G    +v +k ++l +++  +   + +++++ 
  EHU01123.1 454 ALQDAKIVNGNSTL-SQAYGAMVSTVGNKTQALKTASTTQqnvVTQLTNRQ 503
                 67888888877654.444787777777777776665544433344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1259  (0.0702214); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3880.07
//
Query:       EHU01124.1  [L=320]
Description: flagellar hook-filament junction protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-22   80.0   7.4    1.7e-22   80.0   7.4    2.9  3  Flagellin_N  Bacterial flagellin N-terminal helical region
    5.4e-06   26.7  15.4    8.5e-05   22.8   4.3    3.5  3  Flagellin_C  Bacterial flagellin C-terminal helical region
  ------ inclusion threshold ------
        0.4   10.9   2.4        2.2    8.5   0.2    3.0  3  DUF2802      Protein of unknown function (DUF2802)


Domain annotation for each model (and alignments):
>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   7.4   2.9e-26   1.7e-22       2     139 .]       4     141 ..       3     141 .. 0.99
   2 !    4.2   1.2     0.007        42      36      83 ..     218     265 ..     213     279 .. 0.84
   3 ?   -0.8   0.2      0.25   1.5e+03      66      90 ..     288     312 ..     275     319 .. 0.57

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 2.9e-26
                  -SS-STTHHHHHHHHHHHHHHHHHHHHTTSBTTSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT CS
  Flagellin_N   2 stnalalaarsnlnknqaelqkaqeelstGlridsalddaaglaisvslrsqiaglsqlvrnnslgisrlqtaqgalselsdilqrlkelavaasnds 99 
                  stn++  +  + ++ +q+++ +a ++lstG r+++++dd+  ++++v l++ +a+ sq++ +++++ + l+ ++++l+ +++ + + +  +vaasn+s
   EHU01124.1   4 STNMIFDQQVRGVSDAQSSWLSAGKQLSTGYRVSNPSDDPIAASRAVVLSQTQAQASQYAVARTFADQGLSLEENTLDGVTNSIMSAQSMIVAASNGS 101
                  899*********************************************************************************************** PP

                  TS-SHHHHHHHHHHHHHHHHHHHHHH-EETTEE-SSGGG- CS
  Flagellin_N 100 nsdedrqslqaelqqLtdelnrianttsfNGekLlagtnt 139
                   sd+dr+s++++l++++ +l +  n+ + NG++++ag++t
   EHU01124.1 102 LSDDDRASYATQLEGVRAQLLNQVNSKDANGRYIFAGYKT 141
                  *************************************987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.007
                  STTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Flagellin_N  36 salddaaglaisvslrsqiaglsqlvrnnslgisrlqtaqgalselsd 83 
                  +++dda ++  s  +++  +gls+   n   + s + t  + l+ l++
   EHU01124.1 218 NGADDATKATFSAAMDKTNRGLSNSLNNVLSVRSEIGTQLKELDTLNA 265
                  79*********************9998888888888877777777665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.25
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Flagellin_N  66 lgisrlqtaqgalselsdilqrlke 90 
                   +is  +  q+al+   ++ +++++
   EHU01124.1 288 QAISSYTMQQQALQASYKTFTDMSQ 312
                  4555555555555555555555555 PP

>> Flagellin_C  Bacterial flagellin C-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.2    0.0024        14      50      75 ..      42      67 ..      39      75 .. 0.90
   2 ?    4.1   0.3      0.01        61      28      61 ..      84     117 ..      77     128 .. 0.82
   3 !   22.8   4.3   1.4e-08   8.5e-05       5      84 ..     240     317 ..     237     318 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Flagellin_C 50 Dpaeestrvtklqiliqasyallaqa 75
                 Dp ++s  v   q+++qas++++a++
   EHU01124.1 42 DPIAASRAVVLSQTQAQASQYAVART 67
                 899999999***************97 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
                  HHHHHHHHHCHHHHHHCHHCCHHHHHHHHHHHHH CS
  Flagellin_C  28 aitnlkaqsenlkaaesrledvDpaeestrvtkl 61 
                  +++ ++aqs +++a+ ++l d D a  +t+++  
   EHU01124.1  84 TNSIMSAQSMIVAASNGSLSDDDRASYATQLEGV 117
                  677799******************9999988754 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.4e-08
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHH CS
  Flagellin_C   5 deaitdldkvrselGavqnRlesaitnlkaqsenlkaaesrledvDpaeestrvtklqiliqasyallaqanqlpqslln 84 
                  ++ ++++ +vrse+G+  + l+  +++ +  + + +++ s+l dvD++++ + +t  q+ +qasy+    + q+  sl +
   EHU01124.1 240 SNSLNNVLSVRSEIGTQLKELDTLNAQGDDRKVIYDSQMSSLVDVDYTQAISSYTMQQQALQASYKTFTDMSQM--SLFQ 317
                  567899************************************************************99999999..7766 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00037       2.2      23      48 ..      52      77 ..       9      78 .. 0.75
   2 ?    0.3   0.0      0.13   7.7e+02      24      45 ..     219     240 ..     201     243 .. 0.78
   3 ?   -1.4   0.1      0.45   2.7e+03      23      37 ..     270     290 ..     250     303 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00037
     DUF2802 23 leqqdpqsklYsqAiklvrqGasvee 48
                l+q+++q+ +Y  A   + qG+s+ee
  EHU01124.1 52 LSQTQAQASQYAVARTFADQGLSLEE 77
                49999*******************98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.13
     DUF2802  24 eqqdpqsklYsqAiklvrqGas 45 
                  ++d+++  +s A+   ++G+s
  EHU01124.1 219 GADDATKATFSAAMDKTNRGLS 240
                 457799999******9999997 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.45
     DUF2802  23 l......eqqdpqsklYsqAi 37 
                        + +   +  Y+qAi
  EHU01124.1 270 RkviydsQMSSLVDVDYTQAI 290
                 133444333344556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2505.25
//
Query:       EHU01125.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU01125.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01125.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01125.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01125.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01125.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01125.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU01125.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01125.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01125.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01125.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01125.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU01125.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01125.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU01125.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01125.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU01125.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01125.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU01125.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01125.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU01125.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01125.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU01125.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01125.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01125.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01125.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01125.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01125.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01125.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01125.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU01125.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU01125.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU01125.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU01125.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU01125.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01125.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01125.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 3547.29
//
Query:       EHU01126.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01126.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 910.91
//
Query:       EHU01127.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01127.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01127.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01127.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01127.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 879.11
//
Query:       EHU01128.1  [L=1089]
Description: RNase E [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-93  310.8   1.1    8.4e-93  310.7   0.0    1.7  2  RNase_E_G   Ribonuclease E/G family
    9.7e-19   66.5   6.2    9.7e-19   66.5   6.2    2.7  2  PNPase_C    Polyribonucleotide phosphorylase C terminal
    6.8e-17   61.6   0.0    1.7e-16   60.3   0.0    1.7  1  S1          S1 RNA binding domain


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.7   0.0   1.4e-96   8.4e-93       1     269 [.     121     391 ..     121     392 .. 0.98
   2 ?   -4.6   1.7       1.9   1.2e+04      91     103 ..     705     717 ..     670     775 .. 0.46

  Alignments for each domain:
  == domain 1  score: 310.7 bits;  conditional E-value: 1.4e-96
   RNase_E_G   1 slaGrylVllpegkk.vgvSkkiedeeererlkelleelk.peevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvl 97 
                 slaG+ylVl+p++ +  g+S++ie  ++r++lke+l++l+ p+++GlIvRta+ g+s+e l+ dl++  k+we i+++a++r ap l+++e+++++r+ 
  EHU01128.1 121 SLAGSYLVLMPNNPRaGGISRRIEG-DDRTELKEALSALElPDGMGLIVRTAGVGKSAESLQWDLSFRLKHWEAIKKAADSRPAPFLIHQESNVIVRAF 218
                 89*********555559********.77********9999899*************************************9****************** PP

   RNase_E_G  98 rdllnedieeivvddkelyeeikeyl.eevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkknlee 195
                 rd+l++di ei++d+++++e +++ + +  +p+ ++k++ly++e plf++y+ie+qie+a++r+v l+sGg++vI++TEAlt+ID+Ns+++t+  ++ee
  EHU01128.1 219 RDYLRQDIGEILIDNPKVLELARQHIaALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317
                 ***********************99988899**********9999****************************************************** PP

   RNase_E_G 196 tvlktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkr 269
                 t+++tNleAa+eiarqlrLR+lgG+IviDFIdm+  +++++v ++l+ea+++Dra++q+++i+++gL+e++R+r
  EHU01128.1 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391
                 *************************************************************************9 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 1.9
   RNase_E_G  91 dlllrvlrdllne 103
                 + +++  +  +++
  EHU01128.1 705 KRAQQEANSAVEQ 717
                 1111111111111 PP

>> PNPase_C  Polyribonucleotide phosphorylase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.13   7.7e+02      27      36 ..    1036    1045 ..    1035    1046 .. 0.86
   2 !   66.5   6.2   1.6e-22   9.7e-19       1      36 [.    1054    1089 .]    1054    1089 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.13
                  EEEEE-SB-- CS
    PNPase_C   27 shatspatkp 36  
                  + a++p+tk+
  EHU01128.1 1036 HFASAPMTKA 1045
                  569******8 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 1.6e-22
                  XXXXXXXXXXXXXXXXX--SSGGG-SEEEEE-SB-- CS
    PNPase_C    1 pveiseWqrpaYyFeGKGsAGghsAtshatspatkp 36  
                  p+++s+Wqrp+++FeGKGsAGghsAt++at+patkp
  EHU01128.1 1054 PARHSDWQRPSFNFEGKGSAGGHSATHQATAPATKP 1089
                  689********************************9 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.8e-20   1.7e-16       2      74 ..      36     118 ..      35     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.8e-20
                 STTTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS........CEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1   2 pekgevveGeVtsvtk..gGafVelgngvegfvpaselsrd........arvedpdevlkvGdevkvkvlkvdkdrrriilsi 74 
                 ++k ++++G++t++++  ++afV++g++ +gf+p++e+sr+        + ++++++vl++G+ev v+++k ++ +++++l++
  EHU01128.1  36 QKKANIYKGKITRIEPslEAAFVDYGAERHGFLPLKEISREyfpasynaHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118
                 789***************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2046  (0.114117); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.52u 0.39s 00:00:01.91 Elapsed: 00:00:00.53
# Mc/sec: 6146.03
//
Query:       EHU01129.1  [L=318]
Description: Ribosomal large subunit pseudouridine synthase C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-31  107.5   0.0    1.2e-30  106.7   0.0    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase
    1.1e-11   44.2   0.4    1.9e-11   43.5   0.4    1.4  1  S4               S4 domain
  ------ inclusion threshold ------
        0.1   11.6   0.0       0.14   11.1   0.0    1.2  1  PAD              Protein-arginine deiminase (PAD)


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0     2e-34   1.2e-30       1     158 [.     101     248 ..     101     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 2e-34
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      +l+v+nKP+g +v+++         +  +  +  ++e + l lvhRLD++tsG+ll+Ak + a++ l+++++e++++K Ylalv+g+ ++  + 
       EHU01129.1 101 HLLVMNKPSGTAVHGGS----GLSFGVIEGLRALRPEARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLREKGMQKDYLALVQGNWPSHIKV 190
                      689**************....3333333444444599999****************************************************** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhl 158
                      +++++ k +  q+g r+ +  ++gk ++t++kv +++     a ++lv+ +++tGr+hQiRvh 
       EHU01129.1 191 VQAPLLK-NIPQSGERMVRVSSEGKPSETRFKVEERF-----AFATLVKASPVTGRTHQIRVHT 248
                      *******.9****************************.....*********************7 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.4   3.2e-15   1.9e-11       1      48 []      20      66 ..      20      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.2e-15
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +R+d++l  ++++  ++ +++++++G V+VN+k++k p y++++gD++
  EHU01129.1 20 QRIDNFLRTQLKGVPKSMIYRIVRKGEVRVNKKRIK-PEYKLEEGDEV 66
                6******99999999*********************.*********98 PP

>> PAD  Protein-arginine deiminase (PAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.4e-05      0.14     270     344 ..      46     122 ..      19     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHHHHT--CCCEEEEE--EEE....-CCCEEEESS--TTS-EEE..TTEEEEE-----EETTEEHHHHH CS
         PAD 270 kidknreilkeelglseediidvPalFkladslkeklkaeaffPnmvnmlvl..gkeLgiPkPfGPvidgecileek 344
                 +++ n + +k e +l+e d +++P +   + +++  + + a + +  n +++  ++ L++ kP G  + g + l   
  EHU01129.1  46 EVRVNKKRIKPEYKLEEGDEVRIPPVRVAERDEDAVSPKLAKVASLANAILFedDHLLVMNKPSGTAVHGGSGLSFG 122
                 57789999******************9998899999999999**********9888899*********998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2264.10
//
Query:       EHU01130.1  [L=195]
Description: Maf family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-45  154.6   0.0    2.2e-45  154.5   0.0    1.0  1  Maf       Maf-like protein


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   1.2e-49   2.2e-45       2     165 ..       5     187 ..       4     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 1.2e-49
                 EEEE---HHHHHHHHCT-..EEEE------.......HHHHHHHHHHHHHHHHH.....TCEEEEEEEEEE...CE---SSHHHHHHHHHHHTTSEEEE CS
         Maf   2 liLASaSprRkelLeqlg..fevvpsdvde.......aeelvlrlAeaKaeava.....alvigaDtvvvl...ilgKPkdeeealemLkklsgrthev 83 
                 ++LAS+Sp R++lL++lg  f+v +++ de       ae+lv+rlA aKa+a+a     +++ig+D+v+vl   i gKP+++++a ++L++ sg++ ++
  EHU01130.1   5 ILLASTSPFRQALLSKLGlpFTVDSPQTDEtplenerAEDLVTRLAIAKAQALAeryphHWIIGSDQVCVLngrITGKPHTAQNAEAQLRAASGNRVTF 103
                 89****************999********99999***999******************999*********97766************************ PP

                 EEEEEEEE..EEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS.-HHHHHT--HHHHHHHHCC CS
         Maf  84 vTgvavlk..ekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieG.sysnVvGLPlaellelLke 165
                 +Tg+a+++  +++ ++++e  +v+f++ls+++i++Y+++++pl++AG+++ +gl g++l++r+eG +++++vGLPl +l+++L+e
  EHU01130.1 104 YTGLALYHpaSQRLMQCCEPFTVHFRTLSQADITNYIKKEQPLQCAGSFKSEGL-GICLFDRLEGrDPNALVGLPLIALSAMLRE 187
                 **********8889999************************************8.999*****8858999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1474.10
//
Query:       EHU01131.1  [L=173]
Description: YceD family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-17   64.3   0.7    1.6e-17   63.7   0.7    1.3  1  YceD           Large ribosomal RNA subunit accumulation prote
  ------ inclusion threshold ------
      0.048   13.6   0.7       0.34   10.9   0.7    2.1  1  zinc_ribbon_4  zinc-ribbon domain
      0.051   14.2   0.0       0.11   13.1   0.0    1.5  1  Trm112p        Trm112p-like protein


Domain annotation for each model (and alignments):
>> YceD  Large ribosomal RNA subunit accumulation protein YceD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.7   2.7e-21   1.6e-17       1     121 []      61     171 ..      61     171 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 2.7e-21
        YceD   1 ldgrvsatvtleCdrClepvelpldveftelfveeeeeaedeedeedeedeeeila.eedeiDlselireelllalPlkplck.pdckgeklcsqcgan 97 
                 l+g+++++vtl C+rC + ++  ++v++    v ++e+ae+  ++   e +e++ + e +eiDl ++i++e++lalP+ p+++ + c+ ++   + g+ 
  EHU01131.1  61 LTGTADVEVTLRCQRCNQVFPHHVHVSYCFSPVSSDEQAEA--LP---EAYEPVDVnEFGEIDLLAVIEDEVILALPVVPVHDsEHCEVSEADMVFGQ- 153
                 68999*************99888777766665666666554..55...889999888999**********************7446666555555555. PP

        YceD  98 lneeecdceeekedprfaaLkkLk 121
                         e+ek++p fa+L+ Lk
  EHU01131.1 154 -----LPAEAEKPNP-FAVLASLK 171
                 .....4555689***.******98 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.7   5.7e-05      0.34       8      36 .]      47      81 ..      45      81 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.7e-05
  zinc_ribbon_4  8 Ckakyeiddeklpakg......vkvrCskCghvFr 36
                   C   +++d+ +l+  +      v +rC +C++vF+
     EHU01131.1 47 CAMSFAVDNQRLAVLTgtadveVTLRCQRCNQVFP 81
                   6777777777665222111222679********95 PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05      0.11      16      64 ..      19      81 ..       3      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                C--HHHHHHHHH.TT---.S-SS----S............CHHTTEECCCCEEEETTTTEEEE CS
     Trm112p 16 pLdwealvevaa.lglne.lpkekpedy............ellleldieegeLvCpncgraYp 64
                +Ld++ +++ ++ ++ +e + +  ++               +l  + ++e +L C +c++++p
  EHU01131.1 19 RLDYQGVYTSQQvERVAEsVVSVDSDVEcamsfavdnqrlAVLTGTADVEVTLRCQRCNQVFP 81
                679999999999888888777766666699**********8899******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1397.86
//
Query:       EHU01132.1  [L=56]
Description: 50S ribosomal subunit protein L32 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-19   70.5   0.6    1.1e-19   70.5   0.6    1.0  1  Ribosomal_L32p  Ribosomal L32p protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.6     6e-24   1.1e-19       1      54 [.       2      54 ..       2      56 .] 0.98

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6e-24
                    S--SS---HHHHHHHGGGT------EEEETTTCCEECTTC-BTTTTBSSSBXSX CS
  Ribosomal_L32p  1 AVPKrKtSksrrrkRrahwklkapnlvecpncgelklpHrvcpscGyYkgrevi 54
                    AV+++K ++s+r++Rr+h++l++++l+++++ ge++l+H+++ + GyY+gr+vi
      EHU01132.1  2 AVQQNKPTRSKRGMRRSHDALTTAALSVDKVSGETHLRHHITAD-GYYRGRKVI 54
                    9*******************************************.********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 423.42
//
Query:       EHU01133.1  [L=346]
Description: fatty acid/phospholipid synthesis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.6e-116  386.9   0.0   7.5e-116  386.7   0.0    1.0  1  FA_synthesis  Fatty acid synthesis protein


Domain annotation for each model (and alignments):
>> FA_synthesis  Fatty acid synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.7   0.0  4.2e-120  7.5e-116       2     322 ..       5     330 ..       4     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 386.7 bits;  conditional E-value: 4.2e-120
                   EEEEESS-STTTTHHHHHHHHHHHHH-TTEEEEEEE-HHHHHTT--S...--TT.EEEEE--B---TTS-HHHHHHH-TTBHHHHHHHHHHTTS-SE CS
  FA_synthesis   2 kiavdamGgdhgpeevvkgvelaakeaddleivlvGdkeeiepllkk.eeeakskleivhaedviemeekpvaavrkkkdssmavalelvkegeada 97 
                   ++a+damGgd+gp  +v ++++a+ + ++l ++lvGd + ++pll+k +  +  +l++v ae+vi+++++p++a+r++++ssm+valelvkeg+a+a
    EHU01133.1   5 TLAIDAMGGDFGPCVTVPAALQALASHSELILLLVGDPDILTPLLAKaDSALLARLQVVPAESVIASDARPAQAIRNSRGSSMRVALELVKEGRAEA 101
                   79*********************************************98899999****************************************** PP

                   EEE-S-HHHHHHHHHHCT-B-TT-SS-EEE-EE--TT.S-EEEE-SSS-TT--HHHHHHHHHHHHHHHHHTS--SS-EEEEEESSSSTT-SSHHHHH CS
  FA_synthesis  98 lvsaGntgAlmalallrlgrikgierpalavllPtvs.gktvlLDvganvdckpkeLvqfalmGsvyaesvlgvdsprvglLniGeeevkgndlvkq 193
                   +vs+GntgAlm+la+l l+ ++gi+rpal+++lP+++ gktv+LD+ganvd ++ +Lvqfa+mG v ae+vlg+ +prv+lLniG ee+kg +++++
    EHU01133.1 102 CVSSGNTGALMGLATLLLKPLDGIKRPALMTVLPHQHqGKTVILDLGANVDSDSAMLVQFAVMGAVMAEEVLGIAHPRVALLNIGHEEHKGLESIRD 198
                   ************************************978********************************************************** PP

                   HHHHHHT-TTSEEEEEEEGGGCCCTS-SEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHTTT---------...-HHCHHHHHHHH-GGGC--EEEE CS
  FA_synthesis 194 tfellkaiesieflGnvegrdildgkvdvivcdgftgNvilktaegvakavksllkeelkkslasklgall...lskalkrlkkkldykeyggavll 287
                   ++ +lka ++i+++G++eg+d+l+gk+dv+vcdgf+gN++lkt+egv+++++sllk+  + +++s++  ll   ++k l r++ +l++++y+ga+ll
    EHU01133.1 199 AALSLKALPQINYIGYLEGNDLLTGKTDVLVCDGFAGNITLKTMEGVVRMFLSLLKSSGEGEKRSWWLTLLgrwVKKRLVRRFGHLNPDQYNGACLL 295
                   ************************************************************************************************* PP

                   TBSS-EEE--TT--HHHHHHHHHHHHHHHHTTHHH CS
  FA_synthesis 288 GlkgvvikshgkankkaikaaIrqakelvetqvis 322
                   Gl+g+vikshg+an++a++ aI+qa+++v++qv +
    EHU01133.1 296 GLRGTVIKSHGAANQHAFAMAINQAEQAVRRQVPE 330
                   ********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2700.41
//
Query:       EHU01134.1  [L=317]
Description: 3-oxoacyl-[acyl-carrier-protein] synthase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-37  127.9   2.7    1.7e-37  127.5   0.0    2.5  3  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    4.4e-31  106.6   0.5    8.9e-31  105.6   0.5    1.6  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
      4e-05   23.1   0.4    6.5e-05   22.5   0.4    1.3  1  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 
    4.7e-05   23.3   0.1    7.4e-05   22.7   0.1    1.2  1  HMG_CoA_synt_N   Hydroxymethylglutaryl-coenzyme A synthase N 
    0.00026   20.4   0.9    0.00026   20.4   0.9    2.0  2  Thiolase_N       Thiolase, N-terminal domain
      0.001   18.4   0.1     0.0029   17.0   0.0    1.7  2  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
  ------ inclusion threshold ------
      0.066   13.2   0.1        0.3   11.1   0.0    2.1  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.63   1.6e+03       9       9 ..      71      71 ..      45     123 .. 0.56
   2 ?   -2.3   0.1         2   5.2e+03      66      80 ..     146     162 ..     129     167 .. 0.61
   3 !  127.5   0.0   6.6e-41   1.7e-37       1      89 [.     228     316 ..     228     317 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.63
                   G CS
  ACP_syn_III_C  9 e 9 
                   +
     EHU01134.1 71 N 71
                   1 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                    S-TT-E..EEEEEEETT CS
  ACP_syn_III_C  66 lkpgdl..vllvgfGaG 80 
                    l+p d+  ++l+g GaG
     EHU01134.1 146 LDPEDRgtIILFGDGAG 162
                    45555400555555555 PP

  == domain 3  score: 127.5 bits;  conditional E-value: 6.6e-41
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEEE CS
  ACP_syn_III_C   1 LekagltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaallr 89 
                    L++++++ e++d+lvphqanlrii a+akklg+++ekvvv+ld++Gntsaas+p aLdeav++g++kpg+l+ll +fG+G+twg+al+r
     EHU01134.1 228 LQANNIAREELDWLVPHQANLRIISATAKKLGMTMEKVVVTLDRHGNTSAASVPSALDEAVRDGRIKPGQLILLEAFGGGFTWGSALVR 316
                    789************************************************************************************98 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.5   3.5e-34   8.9e-31       1      80 []     106     183 ..     106     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 3.5e-34
                  EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEESSSSCEEEEEEEEE-G CS
  ACP_syn_III   1 fDlnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleaseeegarildselgsdg 80 
                  fDl aaC+gf+yalsvAd++i++ga+k++Lvig+++l++ lD++dr t++lfGDGAgAvvl++see+g  i++++l++dg
   EHU01134.1 106 FDLAAACAGFTYALSVADQYIKNGAVKHALVIGSDVLARTLDPEDRGTIILFGDGAGAVVLGQSEEQG--IISTHLHADG 183
                  9***************************************************************9999..********98 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.4   2.5e-08   6.5e-05      90     223 ..      42     168 ..      19     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.5e-08
  Chal_sti_synt_N  90 arleivnaevlklgkeaalkalkewGrPkskithlvfvs.ssevelPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkGar 182
                       r +   + v  +g++aa++al+  G  ++++  ++  + ss   +P +   + + l +++    +  +   c g + +l +a     n +   
       EHU01134.1  42 RRIAAPDETVASMGHQAAQRALEMAGVDANDVGLIIVATtSSSHAFPSSACLIQQMLEIKDC-AAFD-LAAACAGFTYALSVADQYIKNGAVKH 133
                      4445556889**********************987665515677899999999999988764.4444.4678999999**************** PP

  Chal_sti_synt_N 183 vlvvaseitvlgfrgPskdrlddlvGaalfGdGaaaviiGa 223
                       lv+ s++ + ++ +       d     lfGdGa av++G 
       EHU01134.1 134 ALVIGSDVLARTLDPE------DRGTIILFGDGAGAVVLGQ 168
                      *******999887653......334567**********996 PP

>> HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.9e-08   7.4e-05       7     149 ..       5     142 ..       3     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.9e-08
  HMG_CoA_synt_N   7 ilaleiylpaqyvdqaelekfdgveagkytiglgqtrmgfvsdredinslsltvvqkllertkldydaigrlevgtetiidksksvksvlmqlfe 101
                     i++   ylp+q+  +a+lek+ + ++       g  +  +++  e + s+     q+ le   +d + +g + v t +      s    l+q + 
      EHU01134.1   5 IIGTGSYLPSQVRTNADLEKMVETSDEWIVTRTGIRERRIAAPDETVASMGHQAAQRALEMAGVDANDVGLIIVATTSSSHAFPSSA-CLIQQML 98 
                     566778***************9999988888889999999999*******************************9987655555544.4555444 PP

  HMG_CoA_synt_N 102 esgntdiegidtlnacyggtaalfnavnwiessawdgryalvvagdia 149
                     e    d    d   ac g t al  a ++i+  a   ++alv+  d+ 
      EHU01134.1  99 E--IKDCAAFDLAAACAGFTYALSVADQYIKNGAV--KHALVIGSDVL 142
                     5..599************************98875..78999998874 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.9     1e-07   0.00026       8     115 ..      36     142 ..      33     154 .. 0.92
   2 ?   -0.7   0.1      0.29   7.4e+02      28      92 ..     221     280 ..     203     293 .. 0.58

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1e-07
                 EE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSE CS
  Thiolase_N   8 rtpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadv 106
                 rt i + + +  d ++  ++++a++++le agvd+++v  +iv++  ++ +    a  ++ +++i ++ +a  +  +c+    a+  a q i+ g+++ 
  EHU01134.1  36 RTGIRERRIAAPDETVASMGHQAAQRALEMAGVDANDVGLIIVATTSSSHAFPSSACLIQQMLEI-KDCAAFDLAAACAGFTYALSVADQYIKNGAVKH 133
                 7888888888899999*****************************999999999999999999**.999****************************** PP

                 EEEEEEEES CS
  Thiolase_N 107 vvagGvEsm 115
                 ++++G   +
  EHU01134.1 134 ALVIGSDVL 142
                 ****98765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHH CS
  Thiolase_N  28 aealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkav 92 
                 a+++ + l+ ++++ ee+d ++        ++  i  + a k+g+  e ++vt+++    ++++v
  EHU01134.1 221 AHIVDETLQANNIAREELDWLVP-----HQANLRIISATAKKLGMTMEKVVVTLDRHGNTSAASV 280
                 45556666666666666654432.....2223334445555556666666666666555555555 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-06    0.0029      83     204 ..      51     167 ..      26     177 .. 0.74
   2 ?   -1.8   0.0      0.59   1.5e+03      86     109 ..     219     242 ..     195     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
  FAE1_CUT1_RppA  83 aeevlfgavdellaktkvspkdidilvvncslfs.ptPslsamvvnryklredvksynLsgmGCsAglisidlaknllqvhkntlalvvstEnit 176
                     + ++ ++a +  l+ ++v+++d+++++v+++  s + Ps sa ++++    +d  +++L++  C+  + ++ +a + ++    ++alv+ ++ ++
      EHU01134.1  51 VASMGHQAAQRALEMAGVDANDVGLIIVATTSSShAFPS-SACLIQQMLEIKDCAAFDLAA-ACAGFTYALSVADQYIKNGAVKHALVIGSDVLA 143
                     3444467889999***********999986555515677.5556666655679******99.8*999**********************999887 PP

  FAE1_CUT1_RppA 177 lnwYvGnersmllanclFRvGgaavlls 204
                       +   ++r  ++   lF  G+ av+l 
      EHU01134.1 144 RTL-DPEDRGTII---LFGDGAGAVVLG 167
                     654.345555443...566666666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.59
  FAE1_CUT1_RppA  86 vlfgavdellaktkvspkdidilv 109
                      l  +vde l+ +++  +++d lv
      EHU01134.1 219 ELAHIVDETLQANNIAREELDWLV 242
                     356678888888899999999887 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012       0.3      17      55 ..      45      84 ..      31      99 .. 0.75
   2 ?   -1.3   0.0      0.81   2.1e+03      24      51 ..     278     305 ..     243     311 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                     SSTSTTHHHH.HHHHHHHHHHHT--GGGEEEEE-SS-SSH CS
  Ketoacyl-synt_C 17 sltapngeaq.araiekalaeagvdpedvdyveahgtgtp 55
                      ++++  +++  +a ++al++agvd++dv+++    t+++
       EHU01134.1 45 AAPDETVASMgHQAAQRALEMAGVDANDVGLIIVATTSSS 84
                     33344444444688******************99998875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.81
                      HHHHHHHHHHHHHHT--GGGEEEEE-SS CS
  Ketoacyl-synt_C  24 eaqaraiekalaeagvdpedvdyveahg 51 
                      ++   a+ +a+++ +++p +  ++ea g
       EHU01134.1 278 ASVPSALDEAVRDGRIKPGQLILLEAFG 305
                      2333446666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2404.05
//
Query:       EHU01135.1  [L=310]
Description: malonyl-CoA-[acyl-carrier-protein] transacylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-41  143.2   2.5    1.5e-41  143.0   2.5    1.0  1  Acyl_transf_1  Acyl transferase domain


Domain annotation for each model (and alignments):
>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   2.5   8.2e-46   1.5e-41       2     277 ..       6     287 ..       5     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 8.2e-46
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT.-TTSEEEE-TTHHHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskG.vrpaavvGHSlGElA 96 
                    fvf+GqGsQ  GM +eL +  ++  ++ ++a ea+    g+ + +++ + p  +l+++ ++qpaL a  +a + +++ +G  +p +++GHSlGE++
     EHU01135.1   6 FVFPGQGSQSVGMLTELAAAYPVVEETFREASEAL----GYDLWQLVSQGPAEELNKTWQTQPALLAASVAIYRVWQQQGgKQPVLMAGHSLGEYS 97 
                    9***********************99999998876....789**********************************99999*************** PP

                    HHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS......HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC..CCEE CS
  Acyl_transf_1  97 aavvagalsseeallavvlrsrlmmqla..gpgdmaavel.....aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskeg.vgalv 183
                    a+v ag l  ++a++ v lr++lm+++   g g+m a+        ++ ++   + + v++   nsp++vvi+g+++a+++  + ++++g  +al 
     EHU01135.1  98 ALVCAGVLDFADAIKLVELRGKLMQEAVpeGTGAMQAIIGlddaaIAKACEESaQGEVVSPVNFNSPGQVVIAGNKDAVERAGAACKAAGaKRALP 193
                    ***************************9556678877543466553344444425556677889**************************889999 PP

                    ECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCC CS
  Acyl_transf_1 184 envnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalek 277
                      v+v +h + ++++a++la++l +++ + p+v+ i  + +++++      +   + l spvr  e v ++a+++    +e+ p  +l+   ++
     EHU01135.1 194 LPVSVPSHCALMKPAAEKLALTLETLTFKAPQVPVINNVDVKAETDADAIRQALIRQLYSPVRWTESVEAMAAQGVTQLIEMGPGKVLTGLTKR 287
                    9*******************************************9999999999***************************9998887755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2414.22
//
Query:       EHU01136.1  [L=244]
Description: 3-oxoacyl-[acyl-carrier-protein] reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-68  229.5   7.7    4.5e-68  229.3   7.7    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    8.6e-62  208.1   3.7      1e-61  207.8   3.7    1.1  1  adh_short        short chain dehydrogenase
    6.1e-19   68.6   3.8    8.7e-19   68.1   3.4    1.5  1  KR               KR domain
    4.7e-06   26.6   2.3    5.9e-06   26.3   2.3    1.2  1  NAD_binding_10   NAD(P)H-binding
    0.00064   19.3   0.4      0.001   18.6   0.4    1.5  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.039   13.8   2.6       0.24   11.2   0.7    2.3  2  DFP              DNA / pantothenate metabolism flavoprotein
      0.069   13.4   0.1       0.13   12.5   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.083   12.0   0.3       0.21   10.6   0.1    1.7  2  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   7.7     2e-71   4.5e-68       1     233 [.      12     241 ..      12     242 .. 0.97

  Alignments for each domain:
  == domain 1  score: 229.3 bits;  conditional E-value: 2e-71
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIGraiA++la++Ga+vv t  ++++   ++++ + lg + + l ++Vtd ++++++ e+++++fg++Dilvnnagi+++  + ++ ++++e+
    EHU01136.1  12 GASRGIGRAIAETLAARGAKVVGTATSQSG---ADAISAYLGDKgLgLLLNVTDAASIDSVLEKIRAEFGEVDILVNNAGITRD--NLLMRMKDDEW 103
                   999**************************9...89999999988668*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   +++ld+nl+s+f+l+ka+++ +mk++ g+i+++ sv ++++ ++++ y+aaKa+l++++++lA+e++++gi+vN+v+pg+i+T+++++++  ++ ++
    EHU01136.1 104 QDILDTNLTSVFRLSKAVMRaMMKKRmGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREIASRGITVNVVAPGFIETDMTRALN--EDQRS 198
                   ********************8888889**************************************************************8..88899 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    + a+ p grlg+++e+a+a++fLasdea+yitG+tl+v+gG+
    EHU01136.1 199 GILAEVPAGRLGEAQEIANAVAFLASDEAAYITGETLHVNGGM 241
                   9*****************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.8   3.7   4.6e-65     1e-61       1     194 [.       6     196 ..       6     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 207.8 bits;  conditional E-value: 4.6e-65
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv+lvtGas+GIGraia++la++Gakvv ++ s++ + ++ + l+++    l + ++vtd+++++ ++ek+++++g++d+LvnNAGit+++   +++++
  EHU01136.1   6 KVALVTGASRGIGRAIAETLAARGAKVVGTATSQSGADAISAYLGDK---GLGLLLNVTDAASIDSVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDD 101
                 89*******************************99998888888875...8************************************************ PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 ew++++++Nlt+vf l++av++am+k++ GrI++++Sv+g +++ag+a Y+A+Ka+++g+++sla+e+a++gi+vn+vaPG+++Tdm+++l+e++
  EHU01136.1 102 EWQDILDTNLTSVFRLSKAVMRAMMKKRMGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREIASRGITVNVVAPGFIETDMTRALNEDQ 196
                 ******************************************************************************************99986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   3.4   3.9e-22   8.7e-19       3     171 ..       8     177 ..       6     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 3.9e-22
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  l+tG+  g+G+++a++la++ga+ +   + +    + ++a  a l ++g       + v+d++++ ++le+i+ae++++   ++ Ag++rd+ll++m+
  EHU01136.1   8 ALVTGASRGIGRAIAETLAARGAKVVGTATSQ----SGADAISAYLGDKGLGL---LLNVTDAASIDSVLEKIRAEFGEVDILVNNAGITRDNLLMRMK 99 
                 59*********************977655544....34445677888888876...568999999********************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH....HHHHHHHHHHHHHHTEE CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa....flDalaeyrrsqglpav 171
                 +++++ +l   ++ +  L +++ +    +++  ++++ S+ g++g+agqanYaaa a    f  +la++ +s+g  + 
  EHU01136.1 100 DDEWQDILDTNLTSVFRLSKAVMRammkKRMGRIITIGSVVGTMGNAGQANYAAAKAgligFSKSLAREIASRGITVN 177
                 ***************9999887766666999************************98333344444555455444444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   2.3   2.6e-09   5.9e-06       1     151 [.      12     189 ..      12     225 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.6e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC.......HHHH. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealk.......gadaVvsalggggk.......deeg. 77 
                     GA+ ++Gr++++ l+arg  +v+  + +++ +++++    ++gl ++ ++vtd++++ ++l+        +d+ v ++g +++       d    
      EHU01136.1  12 GASRGIGRAIAETLAARG-AKVVGTATSQSGADAISaylGDKGLGLL-LNVTDAASIDSVLEkiraefgEVDILVNNAGITRDnllmrmkD--De 102
                     9****************6.9999999988777766533345555443.4666666666666545466669999888887766658666552..14 PP

                     ...............HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHH.HHHHHHHHHHSSSEEEEEEE-CEE-ST- CS
  NAD_binding_10  78 ...............aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaa.kraaeellrasgldwTivrpggLtdept 151
                                     k++++a+ ++ + R+++++++  +   +g+ g+ n+ + ka l+   +  ++++ ++g++  +v pg+++ + t
      EHU01136.1 103 wqdildtnltsvfrlSKAVMRAMMKKRMGRIITIGSVVGT---MGNAGQANYAAAKAGLIGfSKSLAREIASRGITVNVVAPGFIETDMT 189
                     567777888999**********************997443...688999999999999987355577899999**********9977655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4   4.5e-07     0.001       1     115 [.       8     138 ..       8     179 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.5e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---HHH..HH..HSHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrs....alerlfkee.qpdavihlAavggvaa..ss..edpad 86 
                 +lVtGa+  iG+a+++ l+++g +v+g +  +s+   a  + l        l++td++     le++ +e+ ++d+ ++ A++   +   ++  ++ +d
  EHU01136.1   8 ALVTGASRGIGRAIAETLAARGAKVVGTATSQSGAD-AISAYLgdkgLGLLLNVTDAAsidsVLEKIRAEFgEVDILVNNAGITRDNLlmRMkdDEWQD 105
                 59**********************999998855444.33344478884455555555522223455555556788888888744333201220023346 PP

                 HHHHHTHHHHHHHHHHHHHTCT....EEEEEEE CS
   Epimerase  87 fieknlqgtlnlleaarkagvk....rllflsS 115
                 ++++nl  + +l +a+ +a +k    r++ ++S
  EHU01136.1 106 ILDTNLTSVFRLSKAVMRAMMKkrmgRIITIGS 138
                 677777777777666665544434447777776 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00011      0.24      28      92 ..      15      89 ..       6     158 .. 0.72
   2 ?    2.1   0.1     0.065   1.5e+02      34      50 ..     164     180 ..     149     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                --HHHHHHHHHHHHTT-EEEEEE-S-SS--.......-TT....-EEEE--SHHHHHHHHHHHHTT-SEEEE---S CS
         DFP 28 SGkmGyalAeaaaarGaeVtlvsgpvslet.......peg....vevvkvesaeemleaveealkeadivimaAAv 92
                 G  G a+Ae +aarGa+V   + ++s ++        +g    ++v++  s ++ le++++++ e di++  A +
  EHU01136.1 15 RG-IGRAIAETLAARGAKVVGTATSQSGADaisaylgDKGlgllLNVTDAASIDSVLEKIRAEFGEVDILVNNAGI 89
                44.69**************988766543322333555333223257777888888889999999999****99987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.065
                 HHHHHHHHTT-EEEEEE CS
         DFP  34 alAeaaaarGaeVtlvs 50 
                 +lA+++a+rG +V++v+
  EHU01136.1 164 SLAREIASRGITVNVVA 180
                 69*************97 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.8e-05      0.13       3     101 ..      10     111 ..       8     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.8e-05
                      EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..TTTCEEEEE--TTTHHHHHHHHHTTS...SEEEE-SSGGGHHHHHHHHH CS
  Sacchrp_dh_NADP   3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka..lgvrfeaialdaenyeavLaallkeg...dlvvnlsppissldvlkaCi 90 
                      + Ga  ++G+a+ae la+++    +++    s+++++a+ a +  +g  +     da+ +++vL+++ +e    d++vn ++ + ++ ++++  
       EHU01136.1  10 VTGAsRGIGRAIAETLAARGA---KVVGTATSQSGADAISAYLgdKGLGLLLNVTDAASIDSVLEKIRAEFgevDILVNNAGITRDNLLMRMKD 100
                      5567668************97...5888888888888888777999999999999*******999997766788***********999999866 PP

                      HHT-EEEESS- CS
  Sacchrp_dh_NADP  91 etgvhyvdtsi 101
                      +   + +dt  
       EHU01136.1 101 DEWQDILDTNL 111
                      66666666555 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   9.6e-05      0.21       4      53 ..       9      76 ..       6      93 .. 0.84
   2 ?   -1.6   0.0      0.51   1.1e+03     185     212 ..     211     237 ..     163     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.6e-05
                   EEESTTSHHHHHHHHHCTTTSEEEEEE-TT..................T--TTSHHHHHHHHHHH--S CS
  RmlD_sub_bind  4 lvtGanGqlGseLakqlaeeglevlaltre..................eldltdaeavaellkeakpd 53
                   lvtGa+  +G+++a+ la++g++v+++  +                   l++tda++++++l++++ +
     EHU01136.1  9 LVTGASRGIGRAIAETLAARGAKVVGTATSqsgadaisaylgdkglglLLNVTDAASIDSVLEKIRAE 76
                   8************************9955559999*******99999999999999999999988764 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.51
                    EHHHHHHHHHHHHHHCHH.GGG-EEEE- CS
  RmlD_sub_bind 185 sardlAevllqllekaaeekelagvyHl 212
                    +a+++A++++ l++ +a+   + +++H+
     EHU01136.1 211 EAQEIANAVAFLASDEAA-YITGETLHV 237
                    567777777777777765.334666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1780.80
//
Query:       EHU01137.1  [L=78]
Description: acyl carrier protein (ACP) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-17   62.0   0.4    5.7e-17   61.8   0.4    1.0  1  PP-binding     Phosphopantetheine attachment site
    1.1e-06   28.8   1.2    1.3e-06   28.5   1.2    1.3  1  PP-binding_2   Acyl-carrier
     0.0048   17.3   0.7     0.0053   17.2   0.7    1.1  1  DUF1493        Protein of unknown function (DUF1493)
  ------ inclusion threshold ------
      0.013   15.5   0.2      0.015   15.3   0.2    1.1  1  TerB           Tellurite resistance protein TerB
      0.015   15.4   0.1      0.025   14.7   0.1    1.5  1  Ribosomal_L50  Ribosomal subunit 39S
      0.038   14.1   0.1      0.041   14.0   0.1    1.1  1  DUF1896        Domain of unknown function (DUF1896)
       0.06   13.3   0.0      0.078   12.9   0.0    1.4  1  HLH            Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.4   2.2e-20   5.7e-17       1      67 []       6      73 ..       6      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 2.2e-20
  PP-binding  1 eklrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                ++++ +++e+lgv +ee++ ++++  dlG DSl++vel++aleeef++eip+++    +t+++ ++y+
  EHU01137.1  6 QRVKKIISEQLGVKEEEVTNSASFVeDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYI 73
                5899*********************77****************************88******99997 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.2   5.1e-10   1.3e-06      42      87 ..      31      76 ..       2      78 .] 0.81

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 5.1e-10
  PP-binding_2 42 edrlwdgldtvefvedveelfdvivsdevadnfetlqeiadlvvae 87
                  ed   d+ldtve+v+ +ee fd  ++de a+++ t+q   d++ ++
    EHU01137.1 31 EDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINSH 76
                  455579***********************************99876 PP

>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   2.1e-06    0.0053       1      59 [.       1      54 [.       1      71 [. 0.92

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
     DUF1493  1 ldsiekevlelireelgtklfkgkeveltldtdldedlkldeddaedllekffkrfnVd 59
                +++ie++v + i e+lg+k     e e+t + +  edl++d  d+ +l+ + +++f+ +
  EHU01137.1  1 MSDIEQRVKKIISEQLGVK-----EEEVTNSASFVEDLGADSLDTVELVMALEEEFDTE 54
                789**************99.....99**************************9999876 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.2   5.7e-06     0.015      50     101 ..       6      61 ..       2      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.7e-06
        TerB  50 qafrellksrfglspeeakallelfeeaeeeavdleqftralkrkls....peqrr 101
                 q++++++++++g+++ee+ + +   e++ +++ d+ + + al ++++    +e+++
  EHU01137.1   6 QRVKKIISEQLGVKEEEVTNSASFVEDLGADSLDTVELVMALEEEFDteipDEEAE 61 
                 899********************************************888633333 PP

>> Ribosomal_L50  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   9.8e-06     0.025      42      74 ..      41      73 ..       1      77 [. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.8e-06
  Ribosomal_L50 42 FaflkrlqqllgheipDykltklhtvkdlveyl 74
                    +++  l ++  +eipD +  k++tv+++++y+
     EHU01137.1 41 VELVMALEEEFDTEIPDEEAEKITTVQAAIDYI 73
                   4788899999**********************9 PP

>> DUF1896  Domain of unknown function (DUF1896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.6e-05     0.041      58      97 ..      24      65 ..       8      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
                HHHHHHHTT-S--HHHHHHHH..HHHHSTTTS-TTHHHHHHH CS
     DUF1896 58 lanevLyqgLhfSkydtlvev..leneFekeipeekreelal 97
                + ++  +++L     dt+  v  le+eF++eip+e++e++++
  EHU01137.1 24 TNSASFVEDLGADSLDTVELVmaLEEEFDTEIPDEEAEKITT 65
                4556677888888999998774479*************9975 PP

>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-05     0.078      32      51 ..      56      75 ..      28      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
                TSS-STHHHHHHHHHHHHHH CS
         HLH 32 pskKlsKaeiLekAveYIkh 51
                p++  +K+++++ A++YI++
  EHU01137.1 56 PDEEAEKITTVQAAIDYINS 75
                567789************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 642.18
//
Query:       EHU01138.1  [L=413]
Description: 3-oxoacyl-[acyl-carrier-protein] synthase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-61  207.0   0.5    3.3e-61  207.0   0.5    1.7  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.9e-40  137.5   0.9    3.9e-40  136.6   0.9    1.5  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      3e-05   23.5   0.6    6.2e-05   22.5   0.6    1.4  1  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.012   15.4   6.3       0.81    9.6   0.0    3.7  4  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
       0.18   12.3   0.1       0.67   10.4   0.1    2.0  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.5   9.3e-65   3.3e-61       2     253 .]       4     247 ..       3     247 .. 0.95
   2 ?   -0.8   0.1      0.27   9.5e+02      94     111 ..     282     302 ..     261     352 .. 0.60

  Alignments for each domain:
  == domain 1  score: 207.0 bits;  conditional E-value: 9.3e-65
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++v+++G+g++ P gn+ve++w++Ll+g+++i  ++  ++d++++   ++r+ag +++        +++d+ + ++ +r   +md ++++ ++a  
     EHU01138.1   4 RRVVVTGLGMLSPVGNTVESTWSALLAGQSGINLID--HFDTSAY---ATRFAGLVRD--------FNCDDFISRKDQR---KMDDFIQYGIVAGI 83 
                    89*******************************999..8******...8********9........9************...************** PP

                    HHHHHHTS-HHTCTTGGEEEEEEESSTHH....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHH.HHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgagdy....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSs.lvavhaavqs 188
                    +a++d+gl+ +e +  r+g  iG+g+g      +++++l  +g+++k+sp++v++++ n++ag++++ +gl+Gps+++ tAC+S+ + ++haa + 
     EHU01138.1  84 QAMQDSGLEVTEENAGRIGAAIGSGIGGLglieENHTSLV-NGGPRKISPFFVPSTIVNMVAGHLTIMYGLKGPSISIATACTSGvHNIGHAA-RI 177
                    ************9999***********5555545556666.4559************************************************.** PP

                    HHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 189 lrsgeadvalaGGvellltpeavagfsaag.llspd.grckafdpka...dGfvlGEGvGavvLkrleda 253
                    + +++adv+laGG+e + tp +v+gf aa+ l++++ +++ a++p++   dGfvlG+G+G++vL+++e+a
     EHU01138.1 178 IAYNDADVMLAGGAEKASTPLGVGGFGAARaLSTRNdNPQAASRPWDkdrDGFVLGDGAGIIVLEEYEHA 247
                    ******************************888888999***************************9987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.27
                    HHHHHHHHHHTS-HHTC...T CS
  ketoacyl-synt  94 eaawealedagltpeel...d 111
                     a+ +al+da +tp+++   +
     EHU01138.1 282 AAMINALRDAQMTPDRIgyvN 302
                    566788889998887763222 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.9   1.1e-43   3.9e-40       1     117 [.     255     369 ..     255     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 1.1e-43
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+i+g++++sd++h++ + ++g+++a+a+ +al++a+++p++++yv+ahgt+tp+gD++E++a+k+vfge a  ++++v+S+Ks++GHl++Aa
       EHU01138.1 255 YAEIVGFGMSSDAYHMTSPPEDGSGAAAAMINALRDAQMTPDRIGYVNAHGTSTPAGDKAEAQAVKSVFGEAA--SKVMVSSTKSMTGHLLGAA 346
                      8**********************************************************************99..56***************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G++e i ++lal+++++pptlnl
       EHU01138.1 347 GAVESIYSILALRDQAVPPTLNL 369
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.6   1.7e-08   6.2e-05      64     116 ..     145     195 ..     137     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.7e-08
                 HHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  64 rqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                  +++++ g+  + p++ +  +c Sg++ + +aa+ ia  +adv++agG+E+ s
  EHU01138.1 145 GHLTIMYGL--KGPSISIATACTSGVHNIGHAARIIAYNDADVMLAGGAEKAS 195
                 556666677..789999*********************************987 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0029        11       3      39 ..     160     196 ..     158     199 .. 0.93
   2 ?    9.6   0.0   0.00023      0.81      43      67 ..     223     247 ..     215     266 .. 0.74
   3 ?   -1.8   0.1      0.79   2.8e+03      53      64 ..     277     288 ..     275     295 .. 0.74
   4 ?    0.4   0.1      0.17     6e+02      50      67 ..     321     338 ..     301     349 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0029
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                  + +aC++ v+ +  A+++i+ + a  +L  gae+ s 
   EHU01138.1 160 IATACTSGVHNIGHAARIIAYNDADVMLAGGAEKAST 196
                  679******************************9986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00023
                  TTTHHHHTTB-EEEEEEEEEEESSS CS
  ACP_syn_III  43 wkdrstavlfGDGAgAvvleaseee 67 
                  w++ +  +++GDGAg +vle+ e+ 
   EHU01138.1 223 WDKDRDGFVLGDGAGIIVLEEYEHA 247
                  445566789***********98433 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.79
                  -EEEEEEEEEEE CS
  ACP_syn_III  53 GDGAgAvvleas 64 
                  G GA+A++++a 
   EHU01138.1 277 GSGAAAAMINAL 288
                  568999988875 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.17
                  TTB-EEEEEEEEEEESSS CS
  ACP_syn_III  50 vlfGDGAgAvvleaseee 67 
                   +fG +A  v+++ ++  
   EHU01138.1 321 SVFGEAASKVMVSSTKSM 338
                  366666666666665322 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   1.2e+04       5      20 ..      83      98 ..      82     111 .. 0.79
   2 ?   10.4   0.1   0.00019      0.67      29      44 ..     396     411 ..     381     413 .] 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
  KAsynt_C_assoc  5 ipaleegrlkVvtept 20
                    i+a+++  l+V +e+ 
      EHU01138.1 83 IQAMQDSGLEVTEENA 98
                    8899999999998875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00019
  KAsynt_C_assoc  29 vNsfGfGGsnvHviLk 44 
                      NsfGfGG+n+ +i +
      EHU01138.1 396 CNSFGFGGTNGSLIFR 411
                     5**********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 3794.73
//
Query:       EHU01139.1  [L=271]
Description: 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-46  159.2   0.0    1.6e-46  159.0   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.0   8.7e-51   1.6e-46       1     222 [.      23     245 ..      23     246 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 8.7e-51
  Aminotran_4   1 glfEtmrvyngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglg...aatsepsvavyvsalppgpeseke 95 
                  g+f+t  +  g+i ++d H++RL++s+e+l    ++d+++l  ++ +++  ++s +  l++++s+g+gg+g   a +s p+ +v+vs +p + ++  +
   EHU01139.1  23 GCFTTAAIIKGNIALFDWHIQRLQQSCERL-WLQNVDWQALAGEMLQAASGHDSAV--LKVIISAGSGGRGysrAGCSGPTRIVSVSDWPGHYAALEN 117
                  79*************************999.7889999999999999999999999..********************************99999999 PP

  Aminotran_4  96 ..lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallelakalgle 191
                    ++lv+s  vr   + +++g+K+ln+l++v+ r++ ++++ade+l++d++g v+E++ +N+f+++g++++tP+l++ +++Gi+r+ l+++ +a+g +
   EHU01139.1 118 tgVRLVVSP-VRLARNPQFAGLKHLNRLEQVMIRAHLEQTDADEALVLDTEGWVVECCAANLFWRSGNTIFTPRLDQAGVDGIMRQNLIAQIRAAGQS 214
                  9********.9999999********************************************************************************* PP

  Aminotran_4 192 veereitlkdleeadeafltntlrgvlpvrs 222
                  ++    tl+ l +ade+ ++ntl+ vlpvr+
   EHU01139.1 215 CQVVQATLASLLAADEIVICNTLMPVLPVRQ 245
                  *****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2300.70
//
Query:       EHU01140.1  [L=339]
Description: YceG family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-82  276.0   0.1    4.2e-82  275.8   0.1    1.0  1  YceG      YceG-like family
  ------ inclusion threshold ------
       0.16   12.2   0.1        1.5    9.1   0.0    2.2  2  DUF3979   Protein of unknown function (DUF3979)


Domain annotation for each model (and alignments):
>> YceG  YceG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.8   0.1   4.7e-86   4.2e-82       3     274 ..      44     327 ..      42     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 275.8 bits;  conditional E-value: 4.7e-86
                 E-TT--HHHHHHHHHHTTSSS-HHHHHHHHHHHT.------EEEEE-TT--HHHHHHHHHCTSB.S..SEEE-TT--HHHHHHHHHHSTTS-HHHHH.. CS
        YceG   3 ipegsslseiaekLeeagviksaeafkllaklkk.kkalkaGeyelkkgmsleeilekLtkgkq.ekrkvtipegltleqiaeklekkaelskeell.. 97 
                  p+g++  ++ ++Le++++i ++ +f +l+k++   +++kaG+y+l+++m+++e+l+ L++gk+ +   + + eg++l++++++l+ +a + k++l   
  EHU01140.1  44 LPAGTGRVALEAQLESQHIIPHSIWFGALLKFEPeLAKFKAGTYRLEPSMTVRELLALLASGKEaQFP-LRFVEGQRLQEWLSELR-QAPYVKHTLPdd 140
                 678888889999********************876778************************886666.*****************.556655444444 PP

                 ...S-GGGG-TT-.....STTTT-S-SCEE--SSS--HHHHHHHHHHHHHHHT.HHH......HCT--HHHHHHHHHHHHHH--SSS-HHHHHHHHHHH CS
        YceG  98 ...kaskeeklkv.....ekleGylfPdtYefkkgtsaeeilkrmlaefekvl.kraek..akasgltpyevltlASivekEaakaeerpkvAsVflnR 185
                    +       k+     ++leG + PdtY ++ +t++ ++l+r++++++k++ + ++    ++++++ +e++t+ASi+ekE++++eer+kvAsVf+nR
  EHU01140.1 141 kyaT-----VAKAlrldeNQLEGSFCPDTYLYTANTTDIALLTRAHQRMQKMVdEVWQGrmDNLPYKNEQEMVTMASIIEKETGVSEERAKVASVFINR 234
                 4332.....222234445899******************************888555446689************************************ PP

                 HHTT-----HHHHHHH.T...-S---CCHHC---TT-TTTSSSS-SS-SS---HHHHHHHHS-------EEEE-...-EEEESSHHHHHCT-X CS
        YceG 186 LkkgmrLqsDpTviYg.g...kgrltkkdletdspYNTYkikGLPpgPIanPgkaaieAalnpaktdylYFvakkdgthaFaktleeHnknva 274
                 L++gmrLq+DpTviYg g   +g+lt+kdlet +pYNTY i+GLPpgPIa+P+ka++ Aa++p+kt+ylYFva+++g+h+F+++l+ Hnk+v+
  EHU01140.1 235 LRTGMRLQTDPTVIYGmGaayNGTLTRKDLETATPYNTYIISGLPPGPIAMPSKASLIAAAHPEKTNYLYFVADGKGGHTFTTNLASHNKAVQ 327
                 ****************87899999*************************************************999***************97 PP

>> DUF3979  Protein of unknown function (DUF3979)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00016       1.5      46     108 ..     196     255 ..     163     258 .. 0.78
   2 ?    0.3   0.0     0.091   8.1e+02       8      42 ..     295     329 ..     291     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00016
     DUF3979  46 ydelritlykeeepivtvqriaiskveleedeesiqfv.lermpsrmirlqlkPflaielGlyw 108
                  d+l    yk+e+++vt+ +i  +++ + e++  +  v ++r+++ m rlq  P +   +G  +
  EHU01140.1 196 MDNL---PYKNEQEMVTMASIIEKETGVSEERAKVASVfINRLRTGM-RLQTDPTVIYGMGAAY 255
                 4444...49************9999***8777777655278998876.9*******99999877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.091
     DUF3979   8 leekksgwkyiiqerngkysivdelatekmsvely 42 
                  + +k+ + y++ + +g ++ + +la ++++v+ y
  EHU01140.1 295 AHPEKTNYLYFVADGKGGHTFTTNLASHNKAVQAY 329
                 556789999***9*************999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2530.22
//
Query:       EHU01141.1  [L=211]
Description: thymidylate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-58  195.3   0.0      8e-58  195.2   0.0    1.0  1  Thymidylate_kin  Thymidylate kinase
    5.5e-06   26.4   0.0     0.0049   16.8   0.0    2.1  2  dNK              Deoxynucleoside kinase
      2e-05   24.9   0.3    2.7e-05   24.5   0.3    1.2  1  AAA_28           AAA domain
     0.0015   18.8   0.0      0.003   17.9   0.0    1.6  2  AAA_22           AAA domain
     0.0091   16.6   0.0      0.069   13.7   0.0    2.1  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.014   15.8   0.1        6.2    7.3   0.0    2.3  2  AAA_17           AAA domain
      0.018   14.8   0.4      0.033   13.9   0.3    1.6  1  AAA_30           AAA domain
      0.018   14.2   0.1      0.026   13.6   0.1    1.2  1  LpxK             Tetraacyldisaccharide-1-P 4'-kinase
      0.019   15.1   0.5        0.1   12.8   0.5    2.2  1  AAA_33           AAA domain
       0.16   11.2   0.0       0.16   11.1   0.0    1.2  1  Sin_N            Sin-like protein conserved region


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2   0.0   4.4e-61     8e-58       1     183 [.       8     196 ..       8     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.2 bits;  conditional E-value: 4.4e-61
                      EEESTTSSHHHHHHHHHHHHHHTTE..EEEESSSTTSHHHHHHHHHHH...TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HH CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegik.vvltrepggteiGekirelll...keeeleeqteallfaadriehleekikpalkqgktvivdRylf 90 
                      iEGl+GaGKtt  e+++++l++ gi+ +v+trepggt+++e++r l++   + e++ +++e+l+++a+r++ +e++ikpal++g +v+ dR+ +
       EHU01141.1   8 IEGLEGAGKTTAREAIVATLQAHGIEdIVFTREPGGTPLAEQLRILVKqgiEGEQVTDKAELLMLYAARVQLVETVIKPALARGAWVVGDRHDL 101
                      8***********************************************999999999999********************************** PP

                      HHHHHHHTTTTTTCHHHHHHGGGTTS..E-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHHHH CS
  Thymidylate_kin  91 SslaYqgakegvdldlvlslnedvll..kPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelakederiliidasksieevh 182
                      Ss+aYqg ++gvd++l+++l+++vl+  +Pdlt++ldv pe++l+R+++r+ ld+ e+e+l+f++++r ryl+la+ed +i +ida++++e+v 
       EHU01141.1 102 SSQAYQGGGRGVDAELMRTLRDTVLGdfRPDLTLYLDVTPETGLQRARARGVLDRIEQESLRFFERTRDRYLALAAEDATIRTIDATQPLEQVT 195
                      ********************************************************************************************97 PP

                      H CS
  Thymidylate_kin 183 e 183
                      +
       EHU01141.1 196 T 196
                      6 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0016       2.9       1      31 [.       6      36 ..       6      42 .. 0.84
   2 !   16.8   0.0   2.7e-06    0.0049     105     181 ..     114     188 ..     102     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
                EEEEESTTSSHHHHHHHHHCCSTCEEEE-HH CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvfeEpv 31
                iv+eG  gaGK+t  + +  +l+ + +e++v
  EHU01141.1  6 IVIEGLEGAGKTTAREAIVATLQAHGIEDIV 36
                89***********999888888777766655 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHHHHHHCCH-SEEEEEE--HHHHHHHHHHCTTCCCT.TS-HHHHHHHHHHHHHHHTSGGCS-EEEEETS CS
         dNK 105 elkiykelldnlleelakpdlliYLkasletclerikkRgreeek.kieldYlekLhekyeewlkklnevpvlvidve 181
                 + + +  l+d +l ++  pdl  YL++++et l+r + Rg  +   + +l+++e+   +y +  ++   +++ +id+ 
  EHU01141.1 114 DAELMRTLRDTVLGDFR-PDLTLYLDVTPETGLQRARARGVLDRIeQESLRFFERTRDRYLALAAE--DATIRTIDAT 188
                 567889999*******9.**********************99988788899999999999887776..6667777765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.3   1.5e-08   2.7e-05       2     149 ..       6     176 ..       5     190 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.5e-08
      AAA_28   2 ivitGgestGKTtlleaLa....argyp..vv.pEaareileekl.......akgedalpwvedllafaervleeqleeeaaa.aankvlfcDrglldt 85 
                 ivi G e++GKTt  ea+     a+g++  v+ +E++ + l e+l        +ge+  ++ ++ll + +++++      + a a + +++ Dr  l +
  EHU01141.1   6 IVIEGLEGAGKTTAREAIVatlqAHGIEdiVFtREPGGTPLAEQLrilvkqgIEGEQVTDK-AELLMLYAARVQLVETVIKPAlARGAWVVGDRHDLSS 103
                 9************987766333366877643379999999998886653222222333333.244444444444444444444799************* PP

      AAA_28  86 laYaraygge...aeaelea.aarekrydlvfllppapei..dddgeR...redleereaiderlrealrelg 149
                  aY     g     ++ l +  +   r dl ++l+++pe+  ++  +R   +  ++e  ++ er+r+ + +l 
  EHU01141.1 104 QAYQGGGRGVdaeLMRTLRDtVLGDFRPDLTLYLDVTPETglQRARARgvlDRIEQESLRFFERTRDRYLALA 176
                 ***95554440124444555444499************99888888885544456778888888888776655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.7e-06     0.003       5     114 ..       3     123 ..       1     146 [. 0.75
   2 ?   -0.9   0.0         1   1.8e+03      43      67 ..     135     160 ..     111     204 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.7e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelkaerlsseell.ealeqalrarav.....ielli 96 
                  +++v+ G  G+GKTt  + ++ +l+++        ++vf   p++t   ++l+  + + ++ e+ +  ++ e l+  a + +l ++       +++ +
  EHU01141.1   3 SKFIVIEGLEGAGKTTAREAIVATLQAHG-----IEDIVFTREPGGTpLAEQLRILVKQGIEGEQVT--DKAELLMlYAARVQLVETVIkpalaRGAWV 94 
                 579**********************7762.....344558888888867777888899999988888..555555556677777766667888888899 PP

      AAA_22  97 iDEaqhlr.s..........eealeeLrs 114
                 + + + l+ +          +e++++Lr+
  EHU01141.1  95 VGDRHDLSsQayqgggrgvdAELMRTLRD 123
                 99988885414555666666777777766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
      AAA_22  43 vfvtlpsstsskdl.lrellralgle 67 
                 ++ +++ +t+++   +r +l  +++e
  EHU01141.1 135 LYLDVTPETGLQRArARGVLDRIEQE 160
                 44444444422222233333333333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.8e-05     0.069       1     118 [.       6     156 ..       6     172 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..............................gvnlrdvakenglllevdpe.......aldeskrldedkldklld 62 
                 I++ G  G+GKtt  +++   l+                               g++++d a   +l+  + +        al +   ++ d+    +d
  EHU01141.1   6 IVIEGLEGAGKTTAREAIVATLQAhgiedivftrepggtplaeqlrilvkqgieGEQVTDKAELLMLYAARVQLvetvikpALARGAWVVGDR----HD 100
                 89****************776633466777778888888877777778888777777777777777777766665553333333333333333....33 PP

      AAA_18  63 aleenssaleegknl...vidghlaeleseaakdikkvvLtaspeelleRlekRgyeea 118
                 +  ++++  + g  +   ++  ++   + + + d+   +L++ pe+ l+R ++Rg  ++
  EHU01141.1 101 LSSQAYQ--GGGRGVdaeLMRTLRDTVLGDFRPDLT-LYLDVTPETGLQRARARGVLDR 156
                 3333322..222222233455555555544444444.9999999999999999996554 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0052       9.4       2      22 ..      10      30 ..       9      78 .. 0.81
   2 ?    7.3   0.0    0.0034       6.2      87     121 ..     116     150 ..     109     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0052
                E-TTSSHHHHHHHHHHHHTEE CS
      AAA_17  2 GgPGsGKgtqceklvekygft 22
                G+ G+GK+t+ e +v  ++ +
  EHU01141.1 10 GLEGAGKTTAREAIVATLQAH 30
                899***********9988654 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0034
                 EEEESSHHHHHHHH..SEEEEEE--HHHHHHHHHH CS
      AAA_17  87 gfldglpkevleelkpdaiilleadpeeilerrlk 121
                 +++ +l + vl ++ pd+ ++l++ pe+ l+r   
  EHU01141.1 116 ELMRTLRDTVLGDFRPDLTLYLDVTPETGLQRARA 150
                 556677788999***************99998644 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   1.8e-05     0.033      19      51 ..       4      36 ..       1      80 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrvig 51
                ++ v++G  G+GKtta +a++++++a+g + i+
  EHU01141.1  4 KFIVIEGLEGAGKTTAREAIVATLQAHGIEDIV 36
                4789**********************9955443 PP

>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.4e-05     0.026      47     121 ..      13      93 ..       6     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                 -HSHHHHHHHHHHHTTTS..-EEEEE--TSSS..S-S.EEEEEETT-HHHH-HHHHHH...HHHST.SEEEEESSHHHHHH CS
        LpxK  47 GtGKTPlvialvkllqarglkvgvlSRGYggk..skgapvlvsaessaaevGDEplll...arrtg.vpvvVgsdRvaaar 121
                 G+GKT + +a+v +lqa+g++  v +R  gg+  +++  +lv+++ + ++v D + ll   a+r++ v++v+++  +++a 
  EHU01141.1  13 GAGKTTAREAIVATLQAHGIEDIVFTREPGGTplAEQLRILVKQGIEGEQVTDKAELLmlyAARVQlVETVIKPALARGAW 93 
                 9**************************999873345677888888899999997744412245888888888887776665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   5.7e-05       0.1       2     120 ..       6     153 ..       5     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg......avllssdt...........lrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat..... 78 
                 +++ Gl G+GK+t  e +++ l+       v+ +++            +++ ++g+++++k ++  +     q ++ +++ al++g+ v+ d       
  EHU01141.1   6 IVIEGLEGAGKTTAREAIVATLQahgiedIVFTREPGgtplaeqlrilVKQGIEGEQVTDKAELLMLYAARVQLVETVIKPALARGAWVVGDRHdlssq 104
                 6889*************9877773335444444444488888888886666777777777777777777777777777888888888888777644444 PP

      AAA_33  79 .......nlsrrer.arflklarrlgvpvrivvvetdeetlkeRlakRaa 120
                         ++++ +    + ++ ++  p++ +++++ +et  +R ++R  
  EHU01141.1 105 ayqgggrGVDAELMrTLRDTVLGDFR-PDLTLYLDVTPETGLQRARARGV 153
                 44444442233222134444444444.78888888888888888888865 PP

>> Sin_N  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.2e-05      0.16     274     380 ..      45     152 ..      27     198 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.2e-05
       Sin_N 274 plaeqvkalLkk....akvlsfsklrelvapesdeavseeqlleaLqqvAvlvqGnWVvkselvypkd......ngvsaellaaaRdyiLllFsrdakv 362
                 plaeq+++l k+     +v   ++l+ l a+       + ql+e + + A l +G WVv      + +       gv ael++++Rd +L  F  d  +
  EHU01141.1  45 PLAEQLRILVKQgiegEQVTDKAELLMLYAA-------RVQLVETVIKPA-LARGAWVVGDRHDLSSQayqgggRGVDAELMRTLRDTVLGDFRPDLTL 135
                 6666666666654444666666677776666.......234666655555.56889988544222222345569*******************988775 PP

       Sin_N 363 srkelaaatklppedake 380
                    ++   t+l+  +a+ 
  EHU01141.1 136 Y-LDVTPETGLQRARARG 152
                 3.3444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1504.30
//
Query:       EHU01142.1  [L=329]
Description: DNA polymerase III, delta prime subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-39  135.9   0.0    1.7e-39  135.2   0.0    1.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    4.2e-35  120.8   7.9    9.1e-35  119.7   7.9    1.6  1  DNApol3-delta_C  DNA polymerase III, delta subunit, C termina


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   1.9e-43   1.7e-39       4     161 ..       9     166 ..       6     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.9e-43
  DNA_pol3_delta2   4 ealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieelsr 97 
                      +++++   + + +r +ha+L+++ eg+g ++l   +++ l+c+++++ k+cg+c+ c+ ++ ++hpD   +e e+ ++++ +d +r+++e+++ 
       EHU01142.1   9 QPYRQVIAQHQADRAHHALLVNAMEGMGDDALVWGMSRWLMCQRRDGLKSCGHCHGCQLMQANTHPDWYRLEAEKGKATLGIDAVRQVTEKMYH 102
                      67788888999*****************************************************************9***************** PP

  DNA_pol3_delta2  98 kpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfsp 161
                      +++++  k++ + da +++ +AaNalLktlEEP++n+ f+L ++++++lL t+rSRc++l++ p
       EHU01142.1 103 HAQQGGAKVVWLPDASQLSDAAANALLKTLEEPPANSWFFLSSREPSRLLATLRSRCMVLTLAP 166
                      ************************************************************9987 PP

>> DNApol3-delta_C  DNA polymerase III, delta subunit, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   7.9     1e-38   9.1e-35       3     115 ..     209     319 ..     207     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1e-38
                      HHHHHHHHHHHH.HHHHHHT--GGGHHHHSSTTHHHHHHHHHHHHHHHHHHTTT-S.--S-TT-HHHHHHHHHHS-HHHHHHHHHHHHHHHHHH CS
  DNApol3-delta_C   3 rwkqRkallqalkalalkrrdllsllpllnkedalerleWLlslLlDalklqqgaqeqlvnqdqlplikqlakrlsiekLlkilqkllelreqL 96 
                      +w++R+al++al a al ++d+l+llp+ln +++  r+ WLl+l+lDa+k+qqga+++l+n d ++ ++ la+++s ++L++++q+++++re L
       EHU01142.1 209 AWQARQALCDAL-ASAL-KQDILQLLPVLNTDNPGTRIGWLLALILDAIKWQQGATQWLTNVDRQDVVAMLAQHFSQTALNNSAQDWMRCRETL 300
                      7***********.7766.89************************************************************************** PP

                      HHSTTSSHHHHHHHHHHHH CS
  DNApol3-delta_C  97 lsisgvNkeLllteqLlrw 115
                       ++++vN+eLllt+ Ll w
       EHU01142.1 301 SEVAAVNRELLLTDRLLSW 319
                      ******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2533.52
//
Query:       EHU01143.1  [L=263]
Description: putative metallodependent hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-75  252.4   0.0    4.8e-75  252.2   0.0    1.0  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.2   0.0   2.7e-79   4.8e-75       1     255 []       4     255 ..       4     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 252.2 bits;  conditional E-value: 2.7e-79
                 EEEEE-TTSCCC...TTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEE CS
  TatD_DNase   1 iDaHcHldskef...eedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGL 96 
                 +D+HcHld  ++   ++d ++++++a+++ v  ++ + t++  ++ +++l+   +n +  ++G+HP + +e  + +++e+++l  +++++vva+Ge+GL
  EHU01143.1   4 VDSHCHLDGLDYektHQDLDDVIAKAAARDVRFMLAIATTLPGFSTLKALVGGREN-IALSCGVHPLNQEE--PYDVDEFRRL--AADPQVVALGETGL 97 
                 7******98666555889***********************************998.*********77765..6788999999..************** PP

                 ET-CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCSEEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHHHHHHHHS CS
  TatD_DNase  97 DyysreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeakakvvlHsfsgsaeeakkflklgyyislsglltfknakelrelvkav 195
                 Dyy+++ +tk +q++ F+e++r    l++p+++H+r+a ed+l+il+e++ +++++vlH+f+++  +a+k+l++g+yis+sg++tf+na+++re+++ v
  EHU01143.1  98 DYYYQQ-ETKAQQQHSFREHIRTGIALNKPIIVHTRDAREDTLAILREEQVERCGGVLHCFTEDQATAAKLLDMGFYISFSGIVTFRNAEQIREAARYV 195
                 **7776.9******************************************9999********************************************* PP

                 -GGGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  TatD_DNase 196 pldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlfk 255
                 pldr+L+ETD+Pyl+p+pyrgk+n+pa+ + v+++la lk++++e+la++t++N+ +lf+
  EHU01143.1 196 PLDRILVETDSPYLAPVPYRGKENQPAYTRDVADYLAVLKGVDIETLAATTTQNFSTLFH 255
                 **********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2159.45
//
Query:       EHU01144.1  [L=478]
Description: PTS system glucose-specific IICB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-83  279.0  31.3    4.5e-83  279.0  31.3    1.6  2  PTS_EIIC  Phosphotransferase system, EIIC
    4.4e-14   51.7   0.4    7.4e-14   51.0   0.4    1.4  1  PTS_EIIB  phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.0  31.3     5e-87   4.5e-83       1     324 []      13     320 ..      13     320 .. 0.94
   2 ?   -1.9   0.1      0.14   1.3e+03     204     232 ..     344     372 ..     327     412 .. 0.65

  Alignments for each domain:
  == domain 1  score: 279.0 bits;  conditional E-value: 5e-87
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 ++++mlp+ +l+++Gillg+g++++    ++        ++  +++++++ag+ vfan+pl+faig+a g+  +++gv++la+++++ ++ +++a+ ++
  EHU01144.1  13 GKSLMLPVSVLPIAGILLGVGSANF----SW--------LPVVVSHVMAEAGGSVFANMPLIFAIGVALGFT-NNDGVSALAAVVAYGIMVKTMAVVAP 98 
                 689*******************554....33........4456789*************************6.*******************8888888 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggs 198
                 l  + +     a+i + ++ +tgv+g+ii+g +aay+ n+f++   ikLPe+l+ff gkrfvpii++l +++++glvl++iwp++ +++  ++ +   +
  EHU01144.1  99 LVLHLP----AAEIEAKHLADTGVLGGIIAGSIAAYMFNRFYR---IKLPEYLGFFAGKRFVPIISGL-AAIAMGLVLSFIWPPVGSAIQDFSQWAAYQ 189
                 888888....8********************************...**********************.9***********************999999 PP

    PTS_EIIC 199 gsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlyg......agkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsa 291
                 ++ ++++i+g++er+l+pfGlHh++++pf ++++ +++a+ +q ++g      ag ++a  l+g+f+  m+G+p+a++a+++ a++e++ k+ ++++sa
  EHU01144.1 190 NPVVAFGIYGVVERALVPFGLHHIWNVPFQMQIGEYTNAA-GQVFHGdiprymAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISA 287
                 99*******************************8555555.999999888888777******************************************* PP

    PTS_EIIC 292 altpflfGItepleFgfpfvlnlllfipallag 324
                 alt+fl+GItep+eF+f+fv+++l++i+a+lag
  EHU01144.1 288 ALTSFLTGITEPIEFSFMFVAPVLYVIHAILAG 320
                 *******************************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.14
    PTS_EIIC 204 vlifgflerllipfGlHhafiapfwftsa 232
                 ++++++  + ++ f + + ++a+ ++t++
  EHU01144.1 344 FIVLSGNSSKIWLFPIIGMIYAAVYYTVF 372
                 44444445555555555555555555554 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.4   8.3e-18   7.4e-14       2      34 .]     405     437 ..     404     437 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 8.3e-18
                 HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB   2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34 
                 +++ a+GGkdNI+++++C+TRLR+ ++D skvd
  EHU01144.1 405 KLVTAFGGKDNITNLDACITRLRVSVADVSKVD 437
                 5789****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.33
# Mc/sec: 4315.37
//
Query:       EHU01145.1  [L=524]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-49  167.9  37.6      2e-49  167.7  18.1    3.5  3  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si
    4.2e-11   42.7   2.4    2.1e-10   40.4   0.0    3.1  2  4HB_MCP_1        Four helix bundle sensory module for signal 
     0.0014   18.3   2.2     0.0014   18.3   2.2    2.5  3  Snf7             Snf7
     0.0014   18.6   1.4     0.0014   18.6   1.4    5.1  5  TarH             Tar ligand binding domain homologue
     0.0049   15.9   0.7     0.0049   15.9   0.7    2.0  2  IFT57            Intra-flagellar transport protein 57
  ------ inclusion threshold ------
      0.037   13.6   0.4      0.037   13.6   0.4    2.0  2  DUF4795          Domain of unknown function (DUF4795)
      0.046   13.4   0.3      0.046   13.4   0.3    2.2  2  Lebercilin       Ciliary protein causing Leber congenital ama
      0.094   12.8  11.5       0.18   11.9   2.6    3.0  2  DUF1664          Protein of unknown function (DUF1664)
       0.19   11.6   6.0       0.12   12.2   1.6    2.4  2  LapA_dom         Lipopolysaccharide assembly protein A domain
       0.19   10.9   4.4       0.68    9.1   0.4    2.4  2  TMPIT            TMPIT-like protein
       0.23   12.0   2.1         55    4.3   0.0    3.8  4  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
       0.57    9.2   4.5       0.74    8.8   0.8    2.2  2  Atg14            Vacuolar sorting 38 and autophagy-related su
        0.9    9.4   6.9        0.6   10.0   1.1    2.6  2  Folliculin       Vesicle coat protein involved in Golgi to pl
        1.3    9.6   6.9        0.9   10.1   1.8    2.9  3  Syntaxin-6_N     Syntaxin 6, N-terminal
        3.3    7.7  16.6        4.1    7.4   6.5    3.7  2  Laminin_II       Laminin Domain II
        6.2    7.1   8.3        1.9    8.7   0.7    3.4  2  T3SS_needle_F    Type III secretion needle MxiH, YscF, SsaG, 


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5      0.46   5.1e+02     125     160 ..     144     180 ..      77     193 .. 0.48
   2 !    9.2   5.2   0.00088      0.99      76     169 ..     265     316 ..     251     332 .. 0.46
   3 !  167.7  18.1   1.8e-52     2e-49       2     171 ..     331     486 ..     330     487 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.46
                 HHCCHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
   MCPsignal 125 etgealkeiveavaevadlvqe.iaaaseeqsasiee 160
                 +   alkei+++++++   v++ +  a++   as+++
  EHU01145.1 144 DIPGALKEIATHTDRLHVAVRDpLLEAVKIYNASVHQ 180
                 2333556666666666555554345555555555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00088
                 HHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  76 EVrkLAersaqaakeiealiieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveeva 169
                  +r+L ++ ++aa+++++                                            ae+a+  q++++ +e q++++ee++ ++e+++
  EHU01145.1 265 HIRDLISEVQDAAEQVAKSS------------------------------------------AEIANGTQDLSRRTESQASALEETSASMEQLS 316
                 33333344444443333333..........................................33333333333333333333333333333332 PP

  == domain 3  score: 167.7 bits;  conditional E-value: 1.8e-52
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 d++++a +   +gg+ v++v ++m++i++ss+ i +ii+Vid+ia+QTN+LALNAa+EAARAG+qGrGFaVVA+EVr+LA+rsa aa+ei+ali     
  EHU01145.1 331 DVVKHAFQIVASGGQSVSDVEETMHAIQDSSSRIGEIISVIDGIAFQTNILALNAAVEAARAGDQGRGFAVVAGEVRSLAQRSAVAAQEIKALI----- 424
                 67788889999***********************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                          +e+++rv++g++ v+ +ge++k +v+++++v+dlv ei++ s+eqs+++++v  av+++++ 
  EHU01145.1 425 ---------TESHSRVATGVNNVSVAGETMKAVVKEIHRVNDLVAEISTGSHEQSTGVKQVGIAVAQMDSD 486
                 .........99*********************************************************986 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.9e-13   2.1e-10       2     177 ..       7     185 ..       6     189 .. 0.86
   2 ?   -1.3   0.1       1.2   1.4e+03     144     170 ..     262     288 ..     257     299 .. 0.52

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.9e-13
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradllelilt...kdkaekdellkdieeleaeidkllek 97 
                  k +++Li+l ++++++++i++v+ l sl++++ + +++Y+ rl p+++++ +  +++   +  + +++     + +e ++ + + ++++++  +   +
  EHU01145.1   7 VKLSHRLIFLTAFFLIAMVIIAVICLHSLRTLATSEQQLYTSRLEPVQMMNVAAREMATHFRRGYAYVFPggnVTADESRQNTIKFNQKSQQSVQTAVD 105
                 5899**********************************************9999988888888888887632244444444444467777777888888 PP

   4HB_MCP_1  98 yektilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvdlnlkvAeeaykdn 177
                 + k + ++    + +++ +++  Y ++ ++v +la++++   A +  +t+++    ++++ l e v++ +   +++ +dn
  EHU01145.1 106 FLKQSQDPALVAITQKVLQAWPDYLASMQRVYALANNNDIPGALKEIATHTDRLHVAVRDPLLEAVKIYNASVHQVIDDN 185
                 9999999999*****************************************99999999999888888888888877776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
   4HB_MCP_1 144 yetegrparekliealeelvdlnlkvA 170
                 +++++r   +++++a+e++++  ++ A
  EHU01145.1 262 MRQHIRDLISEVQDAAEQVAKSSAEIA 288
                 444444444444444444444444444 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.8   5.3e+03      43      49 ..     103     109 ..      87     152 .. 0.58
   2 !   18.3   2.2   1.2e-06    0.0014      18     127 ..     260     371 ..     252     375 .. 0.78
   3 ?   -1.3   0.2       1.3   1.4e+03      86     115 ..     437     464 ..     407     507 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.8
                 HHHHHHH CS
        Snf7  43 alllLKq 49 
                 a  +LKq
  EHU01145.1 103 AVDFLKQ 109
                 2222222 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHCTCCHHHHHHHHH CS
        Snf7  18 eslekkikkleaelkklakkgnkdralllLKq...kkryekqldqldnqlanleqvslaienlksnkevlnam.kqgakamkamnkkvdidkidklmde 112
                 + +++ i +l +e+++ a++  k  a ++       +r+e+q + l++++a++eq s a+++  +n +v+n   k + ++  +  + v+  +++++m  
  EHU01145.1 260 SVMRQHIRDLISEVQDAAEQVAKSSAEIANGTqdlSRRTESQASALEETSASMEQLSSAVQSNADNARVANDVvKHAFQIVASGGQSVS--DVEETMHA 356
                 55677788888888888888877777766433112489********************************9751666666666677777..******** PP

                 HHHHHHHHTCHHHHH CS
        Snf7 113 iedqmekaeeisEal 127
                 i+d++   +ei  ++
  EHU01145.1 357 IQDSSSRIGEIISVI 371
                 ***999988886666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHCTCCHHHHHHHHHHHH CS
        Snf7  86 amkqgakamkamnkkvdidkidklmdeied 115
                 +   + ++mka+ k++    + +l  ei+ 
  EHU01145.1 437 NVSVAGETMKAVVKEIH--RVNDLVAEIST 464
                 44445566777777665..66666666654 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.4   1.3e-06    0.0014       2      62 ..       4      64 ..       3      67 .. 0.95
   2 ?    0.6   0.8      0.41   4.6e+02     124     169 ..      91     136 ..      80     143 .. 0.76
   3 ?   -2.3   1.8       3.2   3.6e+03     111     111 ..     298     298 ..     260     345 .. 0.53
   4 ?    0.7   0.2      0.38   4.3e+02     131     169 ..     382     420 ..     375     427 .. 0.84
   5 ?    0.5   0.5      0.45   5.1e+02      65      96 ..     470     503 ..     445     515 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHH CS
        TarH  2 lkrisIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsll 62
                l+r +++ rL+++ a++ + ++++ ++ l++l+    + +++yt+rl+  + ++ a  +++
  EHU01145.1  4 LQRVKLSHRLIFLTAFFLIAMVIIAVICLHSLRTLATSEQQLYTSRLEPVQMMNVAAREMA 64
                7899*************************************************99998876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.41
                 HHHH.HHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH. CS
        TarH 124 kyka.lqdglapliaaleagnleaffdlptqkiqplfealyaayeaL 169
                 k+++  q+ ++ ++++l++ +  a  ++ tqk+ ++  ++ a+++ +
  EHU01145.1  91 KFNQkSQQSVQTAVDFLKQSQDPALVAI-TQKVLQAWPDYLASMQRV 136
                 6777789999999999999999999996.666666667766666654 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.2
                 G CS
        TarH 111 a 111
                 +
  EHU01145.1 298 T 298
                 1 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.38
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH. CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayeaL 169
                 +l ++++a +ag++ + f++++ ++++l +    a++++
  EHU01145.1 382 ALNAAVEAARAGDQGRGFAVVAGEVRSLAQRSAVAAQEI 420
                 79999*****************99999999888888774 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHTTTSSSSS..SHHHHHHHHHHHH CS
        TarH  65 RltLnragiaaladeaeda..kellaraeeslaq 96 
                 ++ + ++gia+++ +++++  ++l+++  +  aq
  EHU01145.1 470 STGVKQVGIAVAQMDSDTQqnAALVEETAAATAQ 503
                 5555566666555555555556666666555555 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7   4.4e-06    0.0049     239     335 ..     258     354 ..     237     371 .. 0.91
   2 ?   -1.2   0.5       0.7   7.8e+02     286     325 ..     452     491 ..     407     522 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
       IFT57 239 slpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplv 335
                 +l+ +++++++l ++++ + e++ +    + +  ++l +  +++   l+e++ +++qls+ v++  ++ +  ++ ++++ q + + g+s++D +  +
  EHU01145.1 258 QLSVMRQHIRDLISEVQDAAEQVAKSSAEIANGTQDLSRRTESQASALEETSASMEQLSSAVQSNADNARVANDVVKHAFQIVASGGQSVSDVEETM 354
                 677889**************************************************************************************86544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.7
       IFT57 286 lsevkekykqlsegvseltrelaeiseelekvkqemeerg 325
                 ++ v++ + ++s+g +e+++  +++   + ++ ++ ++  
  EHU01145.1 452 IHRVNDLVAEISTGSHEQSTGVKQVGIAVAQMDSDTQQNA 491
                 3333333333333333333333333333333333333322 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   3.3e-05     0.037       9      88 ..     259     339 ..     243     392 .. 0.78
   2 ?   -1.0   0.1         1   1.1e+03       7      47 ..     471     511 ..     402     521 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
     DUF4795   9 lkklqeaieklqeelekleekvkelekrledkekklea.lkkqieelekvkadkeeveeelaekadkeaLatkvsrdqfDe 88 
                 l+ ++++i++l  e+++  e+v++ + ++++  ++l    ++q+++le++ a  e+++ +++  ad   +a+ v +  f+ 
  EHU01145.1 259 LSVMRQHIRDLISEVQDAAEQVAKSSAEIANGTQDLSRrTESQASALEETSASMEQLSSAVQSNADNARVANDVVKHAFQI 339
                 45567888888888888888888888888777777754156799****************************998888764 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
     DUF4795   7 ellkklqeaieklqeelekleekvkelekrledkekkleal 47 
                 + +k++  a+ +++ + +++   v+e+    +++++  + l
  EHU01145.1 471 TGVKQVGIAVAQMDSDTQQNAALVEETAAATAQLQRLSDLL 511
                 33555666666666666666666666666666655555555 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   4.1e-05     0.046      11     107 ..     264     364 ..     259     369 .. 0.81
   2 ?   -1.9   0.1       1.9   2.2e+03     157     184 ..     482     509 ..     477     516 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-05
  Lebercilin  11 lkikeLqnelaelqskleelrkE....nklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklkekeaellrlkdklk 105
                 + i +L +e++++ +++++ + E     + L r    q++aL+    + ++L++ +++  +  rv ++ ++++ + + +  +++ + e+ ++ ++d+ +
  EHU01145.1 264 QHIRDLISEVQDAAEQVAKSSAEiangTQDLSRRTESQASALEETSASMEQLSSAVQSNADNARVANDVVKHAFQIVASGGQSVSDVEETMHAIQDSSS 362
                 4555555555555555555544422227999999999*********************************************************99877 PP

  Lebercilin 106 kl 107
                 + 
  EHU01145.1 363 RI 364
                 65 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
  Lebercilin 157 qlaaekkktkeaqeevkalqeeierlkq 184
                 q+ + +++  ++ ee++a++++++rl++
  EHU01145.1 482 QMDSDTQQNAALVEETAAATAQLQRLSD 509
                 5566667777777788888888887765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.6   0.00016      0.18      37     122 ..     267     352 ..     255     373 .. 0.86
   2 ?    4.8   1.8     0.024        27      45     114 ..     430     498 ..     410     511 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 r l + v++ ++q+ + s+++a+  ++Ls+r ++  + l+e+++  +++++ v++  ++ +  ++ v++  ++v + +++++++ee
  EHU01145.1 267 RDLISEVQDAAEQVAKSSAEIANGTQDLSRRTESQASALEETSASMEQLSSAVQSNADNARVANDVVKHAFQIVASGGQSVSDVEE 352
                 34444555556777777899***********************************9999999999999999999999999988886 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.024
     DUF1664  45 svskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                 +v++ +++vs +  +t +   ++i+rv++ + e +  s+e +  v++v   ++++++d ++  ++ve+ +
  EHU01145.1 430 RVATGVNNVSVA-GETMKAVVKEIHRVNDLVAEISTGSHEQSTGVKQVGIAVAQMDSDTQQNAALVEETA 498
                 455555555544.345556677888888888888888888888888888888888888887777777655 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.56   6.2e+02      22      40 ..      15      33 ..      10      49 .. 0.75
   2 ?   12.2   1.6   0.00011      0.12      16      44 ..     193     220 ..     186     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.56
    LapA_dom 22 lllvafgiGallgwllslw 40
                 l ++f+i ++++ +++l 
  EHU01145.1 15 FLTAFFLIAMVIIAVICLH 33
                5778899999999999884 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
    LapA_dom  16 elpLsllllvafgiGallgwllslwsylr 44 
                 ++ L+ll+ ++f++G +lg l+++ s+++
  EHU01145.1 193 SFTLILLIGLTFLAGGVLGTLIFI-SVMK 220
                 789********************9.4554 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4    0.0006      0.68       7      62 ..     266     327 ..     262     387 .. 0.73
   2 ?    2.7   0.3     0.055        61      16      97 ..     443     519 ..     412     521 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0006
       TMPIT   7 lekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk......e 62 
                 +++ + e++++a+++ ++++e+++  +++s+++++q   l+e ++s+++l+++v+      +
  EHU01145.1 266 IRDLISEVQDAAEQVAKSSAEIANGTQDLSRRTESQASALEETSASMEQLSSAVQsnadnaR 327
                 55667788999999999999999999999999999999999999999999988753322221 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.055
       TMPIT  16 etakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkknglyl 97 
                 et k + +++++++ l  ++s+  ++q+  +k++  ++ ++     +++ ++ + l ee++ ++++l+++++ll ++ + ++
  EHU01145.1 443 ETMKAVVKEIHRVNDLVAEISTGSHEQSTGVKQVGIAVAQM-----DSDTQQNAALVEETAAATAQLQRLSDLLLQTTSKFV 519
                 33333444444444444444444444444444444444444.....455667777888889999999999999999888887 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.049        55      34      78 ..      65     111 ..      57     115 .. 0.68
   2 ?   -0.9   0.0       2.1   2.4e+03      33      58 ..     270     299 ..     262     328 .. 0.58
   3 ?    4.2   0.0     0.054        61      35      74 ..     332     371 ..     321     377 .. 0.87
   4 ?   -1.0   0.1       2.3   2.6e+03      37      70 ..     474     507 ..     411     518 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.049
                      HHHHHHHHHHHSSSS-HHHH.HHHH.HHHTTTSCCHHHHHHHHHH-S CS
  Acetyltransf_11  34 kalkkayrllyrsglsleea.leel.eeeaeespevqelldFieask 78 
                      ++ ++ y  ++  g  +++   ++  + +++++++vq+ +dF+++s+
       EHU01145.1  65 THFRRGYAYVFPGGNVTADEsRQNTiKFNQKSQQSVQTAVDFLKQSQ 111
                      66778888888855554444133334555677788*********986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.1
                      HHHHHHHHHHHHSSSS-HHHHHHHH....H CS
  Acetyltransf_11  33 ikalkkayrllyrsglsleealeel....e 58 
                      i+++++a + + +s+ ++++  + l    e
       EHU01145.1 270 ISEVQDAAEQVAKSSAEIANGTQDLsrrtE 299
                      666666666666666666666666643321 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.054
                      HHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHHHHHH CS
  Acetyltransf_11  35 alkkayrllyrsglsleealeeleeeaeespevqelldFi 74 
                       +k+a++++ + g s+++  e++++ +++s+ + e+++ i
       EHU01145.1 332 VVKHAFQIVASGGQSVSDVEETMHAIQDSSSRIGEIISVI 371
                      689******************9998888888899988877 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.3
                      HHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHH CS
  Acetyltransf_11  37 kkayrllyrsglsleealeeleeeaeespevqel 70 
                      k++   + + +  +++ ++ +ee+a++++++q+l
       EHU01145.1 474 KQVGIAVAQMDSDTQQNAALVEETAAATAQLQRL 507
                      3333333344444444455555555555555555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.8   0.00066      0.74      80     148 ..     263     327 ..     238     371 .. 0.57
   2 ?    1.5   0.2      0.11   1.3e+02      59     117 ..     407     486 ..     383     522 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00066
       Atg14  80 rerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqkls 148
                 r++++ l   ++   +++++ ++++a   ++l++R+++    q +  e+  +++++l++a++  +++  
  EHU01145.1 263 RQHIRDLISEVQDAAEQVAKSSAEIANGTQDLSRRTES----QASALEETSASMEQLSSAVQSNADNAR 327
                 55555556666666666666666666666666666655....333333444444444444443333333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
       Atg14  59 edkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.....................kRrsd 117
                 ++ +++++ +++e+k+li ++++r+++    +s   + +++  k++ + +d ++                     ++ sd
  EHU01145.1 407 RSLAQRSAVAAQEIKALITESHSRVATGVNNVSVAGETMKAVVKEIHRVNDLVAeistgsheqstgvkqvgiavaQMDSD 486
                 55567788889999999999999966666666666666666666666666655544444444444444555555555555 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.1   0.00053       0.6      80     138 ..     254     313 ..     247     345 .. 0.62
   2 ?    1.7   0.5      0.18     2e+02      69     136 ..     422     489 ..     397     517 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00053
  Folliculin  80 lllkawsfiveafeklaaeiqalaeaelereskeeeassaassssa........lkadgsglsrreg 138
                  l+ + s++ +++++l++e+q++ae++++++++ ++ ++  s+ ++        +       s++++
  EHU01145.1 254 SLIFQLSVMRQHIRDLISEVQDAAEQVAKSSAEIANGTQDLSRRTEsqasaleeT-------SASME 313
                 5666788999******************988886665544444443222221110.......11111 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.18
  Folliculin  69 alialstdkerlllkawsfiveafeklaaeiqalaeaelereskeeeassaassssalkadgsglsrr 136
                 ali  s ++  + ++++s+  e+++ +++ei +  + ++e ++ ++e+s+  ++     a+ ++ +++
  EHU01145.1 422 ALITESHSRVATGVNNVSVAGETMKAVVKEIHRVNDLVAEISTGSHEQSTGVKQVGIAVAQMDSDTQQ 489
                 56666777777778999999999999999999999999999888777776666555433333333333 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.6   9.6e+03      42      64 ..     141     163 ..     116     181 .. 0.58
   2 ?   10.1   1.8    0.0008       0.9      13      98 ..     269     350 ..     257     351 .. 0.62
   3 ?    0.7   0.2      0.69   7.8e+02       3      52 ..     399     451 ..     398     518 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.6
  Syntaxin-6_N  42 trteLrkalrsiewdledLeetv 64 
                    ++++  al++i +  + L  +v
    EHU01145.1 141 NNNDIPGALKEIATHTDRLHVAV 163
                   34455555555555555555554 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0008
  Syntaxin-6_N  13 slnkaeslyrrwerlledtss..s.......tseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevreevkem 98 
                    ++          ++++ +++  +        +++l++ ++   +al++ +  +e+L  +v   ++n ++ ++ ++ ++   ++v++  + v+++
    EHU01145.1 269 LIS----------EVQDAAEQvaKssaeianGTQDLSRRTESQASALEETSASMEQLSSAV---QSNADNARVANDVVKHAFQIVASGGQSVSDV 350
                   233..........333333332221111112456666666666666666666666666666...99*99***********999999999999887 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.69
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtsss...tseeldetrteLrkalrs 52 
                   F +v+ eV++ +++ +   ++ + l ++++s+     ++++ + + +++ +++
    EHU01145.1 399 FAVVAGEVRSLAQRSAVAAQEIKALITESHSRvatGVNNVSVAGETMKAVVKE 451
                   67778888888888887777777777766663233222222222223332222 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.5    0.0037       4.1      15      73 ..     301     359 ..     266     392 .. 0.59
   2 ?    2.1   2.4      0.17   1.9e+02      14      67 ..     430     486 ..     413     518 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0037
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGG CS
  Laminin_II  15 vleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLld 73 
                   + l++ s+ +e++++ +++ +++++  n++vk a +++++ ++sv+++e+++  + d
  EHU01145.1 301 QASALEETSASMEQLSSAVQSNADNARVANDVVKHAFQIVASGGQSVSDVEETMHAIQD 359
                 23344555555566666666666666666666666666666666666666666665554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                 XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--T CS
  Laminin_II  14 evleqlaplsqnlentk...eklseinrsveetnekvkdankairdArrsvkkLekl 67 
                  v   ++++s+  e +k   ++++++n+ v+e+    ++ ++++++++ +v +++  
  EHU01145.1 430 RVATGVNNVSVAGETMKavvKEIHRVNDLVAEISTGSHEQSTGVKQVGIAVAQMDSD 486
                 444455555443333331114566666666666666666666666666666666544 PP

>> T3SS_needle_F  Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.7    0.0017       1.9      13      46 ..      94     126 ..      89     131 .. 0.89
   2 ?    0.1   0.7      0.86   9.6e+02       9      36 ..     288     315 ..     280     332 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0017
                    HHHHHHHHHHHHHHHHSTTXHHHHHHHHHHHHCH CS
  T3SS_needle_F  13 skaekelqdalealkadpsdPaaLakvQfklqqY 46 
                    +k+++++q+a+  l ++ +dPa  a  Q  lq +
     EHU01145.1  94 QKSQQSVQTAVDFL-KQSQDPALVAITQKVLQAW 126
                    67889999999999.788***************9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.86
                    HCCTHHHHHHHHHHHHHHHHSTTXHHHH CS
  T3SS_needle_F   9 sqkvskaekelqdalealkadpsdPaaL 36 
                     +++++++++ +++++al++   + ++L
     EHU01145.1 288 ANGTQDLSRRTESQASALEETSASMEQL 315
                    5666677777777777765544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2197  (0.122539); expected 358.6 (0.02)
Passed bias filter:                      914  (0.0509789); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.43
# Mc/sec: 3662.30
//
Query:       EHU01146.1  [L=116]
Description: purine nucleoside phosphoramidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-28   99.4   0.0    1.7e-28   99.2   0.0    1.0  1  HIT       HIT domain
      6e-22   78.3   0.0    6.3e-22   78.2   0.0    1.0  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.9e-32   1.7e-28       1      96 [.      12     108 ..      12     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.9e-32
                 TGCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCC...HHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT   1 ekeipstvvyeddlvlafldidpkapghlLvipkkhlselhdlt...eeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                 ++eip++vvy+d+lv+af+di+pkap+h+L++p+  +++ +d++   e++l+++++a+ k+a++++    ++g+r+++n+++h+gq+v+h+H+H+++++
  EHU01146.1  12 RREIPADVVYQDELVTAFRDISPKAPTHILIVPNILIPTANDVEaahEQALGRMFTAAAKIAREEGI--DKEGYRLIVNCNQHGGQEVYHIHMHLVGGK 108
                 68***********************************999999999999*****************9..689************************987 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0     7e-26   6.3e-22       2     101 ..       5     106 ..       4     116 .] 0.95

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 7e-26
                 -HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T..-EEEEE--SCCCT--S-S--EE CS
      DcpS_C   2 wvfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne..vdaeelrvgvhyqPsvyhlHlH 98 
                 ++f +++++++p++vvy+de +++++Di pka++h+l++p+  i++ +d++++h + l +m++ a k+++e+ +   +++  +++  h  + vyh+H+H
  EHU01146.1   5 TIFSKIIRREIPADVVYQDELVTAFRDISPKAPTHILIVPNILIPTANDVEAAHEQALGRMFTAAAKIAREEGIDkeGYRLIVNCNQHGGQEVYHIHMH 103
                 689*********************************************************************988899999****************** PP

                 EEE CS
      DcpS_C  99 vis 101
                 ++ 
  EHU01146.1 104 LVG 106
                 997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 938.23
//
Query:       EHU01147.1  [L=122]
Description: putative outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-24   84.7   0.0    3.8e-24   84.4   0.0    1.1  1  DUF1425   Protein of unknown function (DUF1425)


Domain annotation for each model (and alignments):
>> DUF1425  Protein of unknown function (DUF1425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.0   2.1e-28   3.8e-24       1      92 []      31     121 ..      31     121 .. 0.99

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 2.1e-28
                 EEEETTEEEEEEEEEEEEEECCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-SSTT--EEEEEEE CS
     DUF1425   1 vvensvlaagisveelklresngllraqvtlsnkskkdltlqYrFyWyDkqGlevepeespWksltlhgketvtvssvapnpeasqfrlyvr 92 
                 v+e+svl+agi ++e++l++++g++ra++ l+n++++++ ++Yr+yWyD++Gle++p+e + + +t++++++++  s+  n +as++rly++
  EHU01147.1  31 VMESSVLSAGIITDEPTLDDHDGQKRASSILYNQRETPVVVHYRYYWYDDKGLEITPREPA-QIVTVPPDGSFAAVSQLGNLTASKVRLYIY 121
                 79********************************************************999.****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 983.69
//
Query:       EHU01148.1  [L=192]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-34  118.6   0.2      3e-34  118.1   0.2    1.2  1  LpoB      Peptidoglycan-synthase activator LpoB
  ------ inclusion threshold ------
      0.022   14.9   0.3      0.033   14.3   0.3    1.3  1  FlgT_M    Flagellar assembly protein T, middle domain


Domain annotation for each model (and alignments):
>> LpoB  Peptidoglycan-synthase activator LpoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.2   3.3e-38     3e-34       7     144 ..      56     187 ..      50     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 3.3e-38
        LpoB   7 eemvqsllssplveqllkkdgkr..pvlvvssvkNkTsehidtesltkkirraLlksgkvrfvsgaqrerareelreqqesglvdqstaaklgrligAd 103
                  ++ +++ ++plv+q++++ + +  +vl+v+++kN+T+++++ e++t++i++aL+++gk+ +vs +q ++a++ l+ + +++l ++s+a++l+r++ A+
  EHU01148.1  56 VTINWDATVQPLVAQMVRAATVQpgSVLLVDRIKNNTNGSLQSEKATSAIQTALNNNGKFSLVSPEQLAQAKQALGLSPDDSLNSRSKAIGLARNVNAQ 154
                 5789*******************99************************************************************************** PP

        LpoB 104 ysLsGkissivkaeggekqvyykitleLtdvetgeivWsge 144
                 y+L+++ +++vk         ++i+++L+ v+tgei+Wsg+
  EHU01148.1 155 YVLYSTAKGDVK--------TPTIQMQLMLVQTGEIIWSGN 187
                 ************........99*****************97 PP

>> FlgT_M  Flagellar assembly protein T, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   3.7e-06     0.033      35      96 ..      99     160 ..      85     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-06
      FlgT_M  35 kalsrklaqelnqqsslavleatsqaliddaptseslsnkeqlenirsLaeqtdsQYvlsgv 96 
                 ++ ++ ++++ln++++++ ++  + a+ ++a   + +++ ++ +++  La++ ++QYvl+++
  EHU01148.1  99 EKATSAIQTALNNNGKFSLVSPEQLAQAKQALGLSPDDSLNSRSKAIGLARNVNAQYVLYST 160
                 678999************888888777774322333344466788999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1485.73
//
Query:       EHU01149.1  [L=270]
Description: thiamine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-18   66.0   7.6    4.6e-18   66.0   7.6    1.8  2  APH             Phosphotransferase enzyme family
      3e-06   27.0   0.0    0.00028   20.5   0.0    2.2  2  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   7.6   5.1e-22   4.6e-18       8     227 ..      29     220 ..      24     228 .. 0.87
   2 ?   -0.6   1.1      0.11   9.9e+02     116     154 ..     230     268 ..     221     270 .] 0.74

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 5.1e-22
                 .SSCEEEEEEETT--EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCH CS
         APH   8 gasnrtylvttpagryvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaal 105
                 g+  ++ ++ t++gry+lr +p++  +    +re+++lr L+ +g+ v ++la    ++ +g   +++++++g++l++    a  +++ ++++ +l +l
  EHU01149.1  29 GLTGQSCRILTAQGRYLLRPAPHPaIPFVNRQREHRVLRKLQSSGL-VNAPLA----GNRHG---LVMPWQEGEVLDE----AGFRAQRYEVITLLQRL 115
                 456678999**99*******99999999999***************.999***....57777...6************....56667777999****** PP

                 HCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 106 hqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                 h       pl++++ + l ll+q  ++++++  + l++ l +l+eq   + ++l+        lH D hp Nl+    +g    +iD+e+a  g+++ +
  EHU01149.1 116 HHQ-----PLTGYRVVLLPLLWQYWQQCQQRQYCWLRQ-LKRLTEQGEPRPLRLA-------PLHMDVHPANLIQS-SQGLH--LIDWEYAADGDVALE 198
                 *99.....********************8888888888.7788887555555555.......5*************.66666..9************** PP

                 HHCCHHHCSCHCCCHCHHHHHHH CS
         APH 205 lavllrswtseldpeflaallra 227
                 la ++   + +++  +l +++++
  EHU01149.1 199 LAAVC-FAVPDQQTGWLTDYAER 220
                 *****.6699*******999887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.11
                 -SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHHHHH CS
         APH 116 adflaqdlellrqlesata.rllaselldlleeleeqvla 154
                 +  ++++++l  +++s+ + r  +s   + l++l++q + 
  EHU01149.1 230 RQVRRWQPWLHLLVASWYQlRAEQSGDAQ-LQQLAQQSWS 268
                 45567888888888889887777888887.8888888775 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0021        19       6      83 ..      45     120 ..      40     155 .. 0.76
   2 !   20.5   0.0   3.2e-08   0.00028     145     185 ..     163     201 ..     139     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0021
                     EEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETTEEEEE--TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH CS
  Choline_kinase   6 llRiygkkteelidretElvvfallserglgpklygifenGrieefiesrtlstedlrepeiskkiAkklaelHslel 83 
                     llR   +    +++r++E  v++ l+  gl    ++    G +  + e++ l+ + +r ++   ++ + l++lH+  l
      EHU01149.1  45 LLRPAPHPAIPFVNRQREHRVLRKLQSSGLVNAPLAGNRHGLVMPWQEGEVLDEAGFRAQRY--EVITLLQRLHHQPL 120
                     5555555566789********************************************99764..67788888887766 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.2e-08
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHH CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlan 185
                     +   H D+ + N+++  + + l lID+EYa+   ++ +la 
      EHU01149.1 163 LAPLHMDVHPANLIQ--SSQGLHLIDWEYAADGDVALELAA 201
                     6667***********..9999***********999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1887.30
//
Query:       EHU01150.1  [L=346]
Description: beta-N-acetylglucosaminidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-98  328.5   0.2    5.9e-98  328.2   0.2    1.0  1  Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.2   0.2  3.3e-102   5.9e-98      19     307 ..      18     302 ..       9     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 328.2 bits;  conditional E-value: 3.3e-102
                    --HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS.---S-HHHHHHHT-HH....HHHHHHHH CS
  Glyco_hydro_3  19 kseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssld....likelgri 109
                      +e++++l+++ vGg+ilfa+n++d++ql+el++++r+as+      +l++avDqegG+vqr+++g t +P+++++aa  +++    l++++g++
     EHU01150.1  18 LDAEERDILRHPLVGGVILFARNYHDPAQLAELVRQIRAASHT-----RLVVAVDQEGGRVQRFRDGfTTLPAMQSFAALHDMStageLAQQAGWQ 108
                    5679999************************************.....***********************************99999******** PP

                    HHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHH CS
  Glyco_hydro_3 110 iakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdshkelptvdhseeelrevdlvpfq 205
                    +a+e++a++idi+faPv+d+++ +++ ig+rsF++dp+ + a+a++++ G+++ag+++t+KHFpghG++++dshke+p +++ e+e+re d++ f+
     EHU01150.1 109 MAAEMIAMDIDISFAPVLDIGHISAA-IGDRSFHADPQSALAIARRFIAGMHEAGMKTTGKHFPGHGAVSADSHKETPRDNRREAEVREHDMAIFR 203
                    *************************9.********************************************************************* PP

                    HHH.HTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHHHH CS
  Glyco_hydro_3 206 aai.eagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkkavk 300
                    ++i e+ +d++M+aHv++++ d+ pa+gs+++l++vLR+elGF+Gv++sD+l+m+++a +g+++e+++++L AG+D+ Lv+++r+    + +++++
     EHU01150.1 204 TLIhEQALDAIMPAHVIYSEADPLPASGSPYWLKTVLRQELGFKGVIFSDDLSMEGAAVMGSYAERAQQSLSAGCDMVLVCNDRK----GAVSLID 295
                    ************************************************************************************5....6666666 PP

                    TTSS-HH CS
  Glyco_hydro_3 301 eGeltea 307
                    ++ l ea
     EHU01150.1 296 NLTLIEA 302
                    6665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2570.48
//
Query:       EHU01151.1  [L=180]
Description: putative alpha/beta hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-62  210.2   0.0    2.8e-62  210.0   0.0    1.0  1  UPF0227   Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   0.0   1.6e-66   2.8e-62       1     186 [.       1     177 [.       1     178 [. 0.99

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 1.6e-66
     UPF0227   1 kllYlHGFdS.SPlshkaqllsqfiaedvlaielsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerfglrqvllnPalkplenla 98 
                 +++YlHGFd  SP++h+++l++qfi++dv+ i++s++++k+d+q +lke +k++  + d+++l++G++LGGy+++r+g+++g+rqvl+nP+l+p+e+++
  EHU01151.1   1 MIIYLHGFDAtSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQFLLKETDKMLGLSDDPRPLICGVGLGGYWSERIGFLCGIRQVLFNPNLFPFETME 99 
                 79************************************************************************************************* PP

     UPF0227  99 gklgeeavqstqetyvleeyhiielkalelsrlkrperilvllskqDevldyrravaefraaaeiveddg.dHafkdvsehlqqiiafl 186
                 g++++    +       eey +i++k++  +r+++++r+l +l+++De ld++r++  +++++ +++d++  H+f+++s+hlq+i af+
  EHU01151.1 100 GRIDR----P-------EEYLDIATKCVSDFRERNRDRCLTILARHDEALDSQRTATLLQPYYPLIWDESeSHKFRNLSPHLQRINAFK 177
                 *****....8.......9****************************************************9****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1284.78
//
Query:       EHU01152.1  [L=434]
Description: respiratory NADH dehydrogenase 2/cupric reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-67  225.8   0.2    7.5e-67  225.6   0.2    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.2e-16   61.1   2.4    7.3e-11   42.5   0.3    3.0  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    4.5e-09   36.4   2.3      0.035   13.7   0.0    4.1  4  DAO             FAD dependent oxidoreductase
    0.00014   21.9   4.3      0.041   13.9   0.1    3.6  4  NAD_binding_9   FAD-NAD(P)-binding
    0.00016   20.9   0.5       0.25   10.4   0.0    3.2  3  Lycopene_cycl   Lycopene cyclase protein
    0.00019   20.8   0.7       0.16   11.2   0.0    2.4  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00086   18.1   2.3       0.48    9.1   0.1    3.6  5  HI0933_like     HI0933-like protein
     0.0036   16.5   0.1        1.2    8.2   0.0    2.3  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.016   14.9   0.8        2.8    7.6   0.1    2.4  2  ApbA            Ketopantoate reductase PanE/ApbA
      0.027   14.7   4.2       0.86    9.9   0.1    3.1  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.053   12.4   3.3       0.81    8.5   0.1    2.9  3  Trp_halogenase  Tryptophan halogenase
       0.06   12.6   0.5        4.3    6.5   0.1    2.4  2  FAD_binding_3   FAD binding domain
      0.099   12.0   1.0        6.3    6.1   0.0    2.3  2  ThiF            ThiF family
       0.12   12.6   0.1        9.7    6.5   0.0    2.6  2  TrkA_N          TrkA-N domain
       0.14   12.2   0.4       0.93    9.5   0.1    2.1  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.2   6.3e-70   7.5e-67       1     294 []       6     338 ..       6     338 .. 0.95

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 6.3e-70
                  CSEEEE--SHHHHHHHHHHHH.....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq.....agakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  k++v++GgG++Gl++a++l++     ++a+++lv ++++ +++++ll+++++g+++++  a+    +    n+g+++ lg + ++i ++kk ++l + 
   EHU01152.1   6 KKIVIVGGGAGGLEMATQLGHklgrkKKAEIILV-DRNHSHLWKPLLHEVATGSMDEGIDALsylAH--ARNHGFQFQLG-SLTNINREKKVIQLAEV 99 
                  589******************999988*******.***********************777787633..56779******.*****999999999888 PP

                  EC......TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..............SEEEEES-SHHHHHHHHHHHHHT-.. CS
                  xx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2  91 ke......gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..............krivvvGgGyiGvElAaalaklgk.. 166
                  ++         +++ayd+lv+A Gs+++d+g+pGv++++++l ++ ++a++++ ++l+               +i++vGgG++GvEl+a+l+++ k  
   EHU01152.1 100 VNaqgdvlVPLRELAYDTLVMALGSTSNDFGTPGVKDHCIFL-DNPHQARRFHNEMLNlflkfsasegalekVNIAIVGGGATGVELSAELHNAVKql 196
                  889999998899******************************.***************************99999***************98887778 PP

                  .............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-E CS
                  .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 .............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklgle 251
                               +vtlvea++r+l+al++++saa++++l k Gv+v ++t+v+ +d++g    +++++ge i+adl+v+a+G+++ +  +    gle
   EHU01152.1 197 hsygykaldsealNVTLVEAGERILPALPPRISAAAHQELSKLGVRVLTQTMVTSADKQG----LHTKSGEFIEADLMVWAAGIKAPDFMK-GIGGLE 289
                  88888*******99****************************************999888....8***********************998.****** PP

                  EEETTEEE--TTSBES.STTEEE-GGGC.....TECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 252 lderggivvdeflrtn.vpgiyaiGDva.....ggkggpelaqaAvqqG 294
                  +++ +++vv+++l+t+ +++iyaiGD+a     gg  +p +aq A+q++
   EHU01152.1 290 TNRINQLVVKDTLQTTlDEDIYAIGDCAscalpGGGFVPPRAQSAHQMA 338
                  ***************99****************999***********97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   5.7e-06    0.0069       1      35 [.       7      46 ..       7      63 .. 0.78
   2 !   42.5   0.3   6.1e-14   7.3e-11       1      70 [.     172     256 ..     172     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.7e-06
                EEEEECSSHHHHHHHHHH.....HHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgal.....aelgkkVtvversdkll 35
                k+v+vGgG  glE+A+ l     ++ ++++ +v+r+   l
  EHU01152.1  7 KIVIVGGGAGGLEMATQLghklgRKKKAEIILVDRNHSHL 46
                79****************9555444448999999987766 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 6.1e-14
                 EEEEECSSHHHHHHHHHH.........HHTT........SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgal.........aelg........kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegse 70 
                 ++++vGgG +g+El ++l            g         +Vt+ve+++++l++l++ +s++ +++l+k+g++vl++t v++ ++++
  EHU01152.1 172 NIAIVGGGATGVELSAELhnavkqlhsY--GykaldseaLNVTLVEAGERILPALPPRISAAAHQELSKLGVRVLTQTMVTSADKQG 256
                 589***************7777777550..25555565589*****************************************99765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00056      0.66       1      29 [.       7      42 ..       7      46 .. 0.82
   2 ?    5.3   0.0      0.01        12     151     207 ..      67     130 ..      51     159 .. 0.72
   3 ?    4.9   0.1     0.014        16       2      29 ..     173     217 ..     172     221 .. 0.70
   4 !   13.7   0.0   2.9e-05     0.035     145     213 ..     225     288 ..     223     341 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00056
                EEEEECTSHHHHHHHHHHHHT.T......EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g......Vtllekg 29
                ++vi+GGG  Gl  A +L  + g      ++l++++
  EHU01152.1  7 KIVIVGGGAGGLEMATQLGHKlGrkkkaeIILVDRN 42
                59****************42234556899*****98 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.01
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECT.EEE.E.....EEEEEEE--GGGHH.HH CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgve..rttp.gen.d.....aadavVnaaGawsd.ll 207
                 ++++ a+++G ++ +g   t++++ ++kv ++   + ++ g + +     a+d++V+a G  s+ + 
  EHU01152.1  67 SYLAHARNHGFQFQLG-SLTNINR-EKKVIQLAevV-NAqGDVlVplrelAYDTLVMALGSTSNdFG 130
                 68899***********.*****55.45555555533.33376655889998899******9887433 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.014
                 EEEECTSHHHHHHHHHH......HHT..T..........EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeL......arr..g..........Vtllekg 29 
                 ++i+GGG +G+    eL        +  g          Vtl+e+g
  EHU01152.1 173 IAIVGGGATGVELSAELhnavkqL-HsyGykaldsealnVTLVEAG 217
                 9*********99998886654430.223255566677888888887 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTTCTT CS
         DAO 145 pakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.llgllkel 213
                 p +  aa  +++ +lGv++l++t vt+ +      +g+  +t+ ge  +ad  V aaG+ +  ++++++ l
  EHU01152.1 225 PPRISAAAHQELSKLGVRVLTQTMVTSAD-----KQGL--HTKsGEFIEADLMVWAAGIKAPdFMKGIGGL 288
                 56667788899****************83.....4688..555587756699********99655444333 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   3.4e-05     0.041       1      36 [.       9      44 ..       9      53 .. 0.89
   2 ?   -0.9   0.0       1.2   1.4e+03     122     155 ..      91     124 ..      68     125 .. 0.72
   3 !    6.1   0.2    0.0088        10       1      33 [.     174     216 ..     174     233 .. 0.73
   4 ?    0.8   0.0      0.35   4.2e+02     127     154 ..     248     275 ..     227     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   +ivG+G+ Gl ++++L ++  +k++ ei l+d++++
     EHU01152.1  9 VIVGGGAGGLEMATQLGHKLGRKKKAEIILVDRNHS 44
                   7*******************9999*********654 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
  NAD_binding_9 122 aevvdleeradgqavlladgaslaadaVvLAlGh 155
                    ++v++l+e  + q  +l   ++la+d +v+AlG 
     EHU01152.1  91 KKVIQLAEVVNAQGDVLVPLRELAYDTLVMALGS 124
                    4566666655555445666688999999999995 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0088
  NAD_binding_9   1 aivGaGprGlavlerLlara..........kkkspleitlfdp 33 
                    aivG+G++G+ + ++L +             +++ l++tl++ 
     EHU01152.1 174 AIVGGGATGVELSAELHNAVkqlhsygykaLDSEALNVTLVEA 216
                    8**************9988755555555444445566666665 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.35
  NAD_binding_9 127 leeradgqavlladgaslaadaVvLAlG 154
                    + ++ad+q +++++g+ ++ad  v A G
     EHU01152.1 248 MVTSADKQGLHTKSGEFIEADLMVWAAG 275
                    4456788899**************9998 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00021      0.25       2      38 ..       8      47 ..       7      68 .. 0.86
   2 !    6.1   0.1     0.004       4.8       2      36 ..     173     220 ..     172     256 .. 0.83
   3 ?    0.8   0.0      0.17     2e+02     254     295 ..     306     347 ..     297     370 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
  Lycopene_cycl  2 vvviGaGpAglslAarl...teakpglkvvlieaspsllf 38
                   +v++G+G+ gl +A +l      k++ +++l++   s l+
     EHU01152.1  8 IVIVGGGAGGLEMATQLghkLGRKKKAEIILVDRNHSHLW 47
                   89**************965556788889999998888777 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.004
  Lycopene_cycl   2 vvviGaGpAglslAarl.............teakpglkvvlieaspsl 36 
                    ++++G+G+ g+ l a+l             +    +l+v+l+ea++ +
     EHU01152.1 173 IAIVGGGATGVELSAELhnavkqlhsygykALDSEALNVTLVEAGERI 220
                    79***************6666666666655555667777777777766 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.17
  Lycopene_cycl 254 leqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalr 295
                    l++  +aiG  a+   P  G+  +r++++ ++ + a+ ++l 
     EHU01152.1 306 LDEDIYAIGDCASCALPGGGFVPPRAQSAHQMASCALDNILL 347
                    455689*********************999977777777765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0016       1.9       1      18 [.       9      26 ..       9      45 .. 0.81
   2 !   11.2   0.0   0.00013      0.16     162     305 .]     168     314 ..     142     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
  Pyr_redox_3  1 iIiGaGPaGlaaaielkk 18
                 +I+G+G+ Gl++a++l +
   EHU01152.1  9 VIVGGGAGGLEMATQLGH 26
                 7************99854 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
  Pyr_redox_3 162 yagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiek....eesdpsyslkpdienrleelvke..ekikvlfnaevkeikekeeeykvktedgk 253
                  +++ +++++Gg+ ++v+   el ++ ++ + +  ++  ++    +  +   ++ p   +r+ ++ ++  +  k+  +  ++ + ++  +  ++t++g+
   EHU01152.1 168 LEKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKALDSEalnvTLVEAGERILPALPPRISAAAHQelS--KLGVRVLTQTMVTSADKQGLHTKSGE 263
                  5677899*********************99987765322211003345566999*******999888553..33333333333334444578999986 PP

  Pyr_redox_3 254 kvevkddvvlatGykpdlsflkk.slfeldedgrpvlteeteetnvpglflaG 305
                   + + d +v a G k   +f+k   ++e+++ ++ v+++  + t  ++++ +G
   EHU01152.1 264 FI-EADLMVWAAGIKAP-DFMKGiGGLETNRINQLVVKDTLQTTLDEDIYAIG 314
                  65.5699999***9876.67777799999999999****99***99****998 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0004      0.48       2      36 ..       7      46 ..       6      51 .. 0.82
   2 ?   -3.4   0.0       2.5   2.9e+03     149     166 ..     109     126 ..      86     127 .. 0.67
   3 ?    0.9   0.1      0.12   1.5e+02       2      20 ..     172     190 ..     171     197 .. 0.78
   4 !    5.3   0.0    0.0054       6.5     112     164 ..     229     276 ..     209     281 .. 0.85
   5 ?   -3.0   0.0       1.8   2.2e+03     358     394 ..     286     326 ..     283     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0004
                 SEEEE--SHHHHHHHHHH.....HHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisa.....akrgkrVlllekakklg 36
                 +++++GgGa Gl  A ++     +k++++++l++++++ +
   EHU01152.1  7 KIVIVGGGAGGLEMATQLghklgRKKKAEIILVDRNHSHL 46
                 79**********9999997666667788899999988765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
                  TTEEEEESEEEE----SS CS
  HI0933_like 149 seeeleadklvlAtGGlS 166
                    +el+ d+lv+A+G++S
   EHU01152.1 109 PLRELAYDTLVMALGSTS 126
                  347889999999999987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.12
                  SEEEE--SHHHHHHHHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaa 20 
                  +++++GgGa G+  +++++
   EHU01152.1 172 NIAIVGGGATGVELSAELH 190
                  689********97777665 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0054
                  HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 112 vdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                    a  +el++ gv++ ++t v+s+  +++g   ++tks+e +ead +v A G 
   EHU01152.1 229 SAAAHQELSKLGVRVLTQTMVTSA--DKQG---LHTKSGEFIEADLMVWAAGI 276
                  5667899****************9..4455...88999***********9985 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 1.8
                  EEE-GGGB-T....TT-BBTTSTTEEE-GGGBSEEE-TTTH CS
  HI0933_like 358 GGVdlkevss....ktmeskkvpgLffaGEvlDvegvtGGy 394
                  GG +++ +++    +t+++   ++++ +G +     + GG+
   EHU01152.1 286 GGLETNRINQlvvkDTLQTTLDEDIYAIGDCASCALPGGGF 326
                  88888887743333789999999999999988888777777 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0052       6.2     191     226 ..       5      43 ..       2      51 .. 0.77
   2 !    8.2   0.0     0.001       1.2     187     216 ..     166     195 ..     139     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0052
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrr...qkkvelklvtrse 226
                   k+i++vG+G  + e++ +l ++   +kk+e+ lv r++
   EHU01152.1   5 VKKIVIVGGGAGGLEMATQLGHKlgrKKKAEIILVDRNH 43 
                  689**************9998775435557777766655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.001
  K_oxygenase 187 ellakkriaVvGsGqSaaeifedllrrqkk 216
                    l+k +ia+vG+G ++ e+  +l++  k+
   EHU01152.1 166 GALEKVNIAIVGGGATGVELSAELHNAVKQ 195
                  378899******************998664 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0091        11       1      33 [.       8      46 ..       8      53 .. 0.75
   2 ?    7.6   0.1    0.0024       2.8       1      53 [.     173     222 ..     173     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0091
                EEEES-SH....HHHHHHHHHHH.HTHCEEEE-SCH.HH CS
        ApbA  1 iailGaGa....iGsllaakLak.agadvtlilrsr.rl 33
                i+i+G Ga    + + l++kL + ++a+++l++r+  +l
  EHU01152.1  8 IVIVGGGAggleMATQLGHKLGRkKKAEIILVDRNHsHL 46
                7899999933333456777777778889******98665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0024
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETT.CEEEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseg.geeilr 53 
                 iai+G Ga G  l a+L++a  + + ++ ++    l ++ l++t ++ ge+il+
  EHU01152.1 173 IAIVGGGATGVELSAELHNAVKQLHSYGYKA----LDSEALNVTLVEaGERILP 222
                 89***************99999988888777....5666677777666666554 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00072      0.86       1      29 [.      10      43 ..      10      46 .. 0.75
   2 ?    5.3   0.1     0.019        23       1      18 [.     175     192 ..     175     220 .. 0.57
   3 ?   -3.3   0.0       9.1   1.1e+04      10      23 ..     231     244 ..     229     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00072
                   EE--SHHHHHHHHHHH.....CCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLa.....kagfdvlllekrd 29
                   IvG+G++Gl +A  L      k+++++ l+++++
     EHU01152.1 10 IVGGGAGGLEMATQLGhklgrKKKAEIILVDRNH 43
                   9*************97323223466888888864 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
                    EE--SHHHHHHHHHHHCC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka 18 
                    IvG+G++G  + ++L++a
     EHU01152.1 175 IVGGGATGVELSAELHNA 192
                    9********999999953 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.1
                    HHHHHHHCCTEEEE CS
  NAD_binding_8  10 vaAylLakagfdvl 23 
                    +a ++L+k g++vl
     EHU01152.1 231 AAHQELSKLGVRVL 244
                    55567999999986 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00068      0.81       1      33 [.       7      41 ..       7      45 .. 0.86
   2 ?    1.1   0.2      0.11   1.3e+02       1      25 [.     172     196 ..     172     230 .. 0.65
   3 ?    1.8   0.0     0.069        82     188     212 ..     255     279 ..     231     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00068
                    EEEEE--SHHHHHHHHHHHHHTTTS..SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk..levtlves 33
                    kivivGGG  G   A+ l++ l +k  +e+ lv+ 
      EHU01152.1  7 KIVIVGGGAGGLEMATQLGHKLGRKkkAEIILVDR 41
                    79****************99986555799999975 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.11
                     EEEEE--SHHHHHHHHHHHHHTTTS CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgk 25 
                     +i ivGGG  G    a l++a+k+ 
      EHU01152.1 172 NIAIVGGGATGVELSAELHNAVKQL 196
                     599********98777777777654 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.069
                     EEEEETTS-EEE-SEEEE-SGGG-I CS
  Trp_halogenase 188 eslrledgreveadlfiDcsGfrgl 212
                     ++l++++g+ +eadl++ + G ++ 
      EHU01152.1 255 QGLHTKSGEFIEADLMVWAAGIKAP 279
                     6899*****************9876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.019        23       4      36 ..       8      45 ..       6     100 .. 0.77
   2 ?    6.5   0.1    0.0036       4.3       2      25 ..     171     193 ..     170     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.019
                   EEEE--SHHHHHHHHHHH.HTTHH....EEEEESSSSS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLs.eaGvr....vvlvekrstt 36
                   ++IVG+G  Gl  a+ L  + G +     +lv++  + 
     EHU01152.1  8 IVIVGGGAGGLEMATQLGhKLGRKkkaeIILVDRNHSH 45
                   78*********777776514554455556777776665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0036
                    EEEEEE--SHHHHHHHHHHHHTTH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGv 25 
                    ++++IVG+G +G+ l+ +L++a v
     EHU01152.1 171 VNIAIVGGGATGVELSAELHNA-V 193
                    7899***************988.5 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2      0.02        23      19      49 ..       6      40 ..       3      46 .. 0.82
   2 ?    6.1   0.0    0.0053       6.3      11      37 ..     163     189 ..     148     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.02
                SEEEEE--SHHHHHHHHHHHH.HTTT...EEEEEE CS
                xxxxxxxxxxxxxxxxxxxxx.xxxx...xxxxxx RF
        ThiF 19 skvllvGaGglGsellknLal.sGvg...kltlvD 49
                +k+++vG G+ G e++++L   +G +   ++ lvD
  EHU01152.1  6 KKIVIVGGGAGGLEMATQLGHkLGRKkkaEIILVD 40
                69****************98667776666677777 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0053
                 HHHHHHHTSEEEEE--SHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrdskvllvGaGglGsellknL 37 
                 ++  +L+++ +++vG G+ G el  +L
  EHU01152.1 163 ASEGALEKVNIAIVGGGATGVELSAEL 189
                 5566899***************98877 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0081       9.7       1      33 [.       8      45 ..       8      55 .. 0.86
   2 ?    3.5   0.0     0.069        83       1      21 [.     173     193 ..     173     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0081
                EEEES-SHHHHHHHHHHHHTT.....EEEEEEESSHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg.....kdvvvidkdeer 33
                i+i+G G  G ++a +L ++       +++++d+++++
  EHU01152.1  8 IVIVGGGAGGLEMATQLGHKLgrkkkAEIILVDRNHSH 45
                89***************88435899956******9976 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.069
                 EEEES-SHHHHHHHHHHHHTT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg 21 
                 i+i+G G +G +l  eL+++ 
  EHU01152.1 173 IAIVGGGATGVELSAELHNAV 193
                 79**************99854 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.47   5.6e+02       1      22 [.       7      28 ..       7      53 .. 0.76
   2 ?    9.5   0.1   0.00078      0.93       1     106 [.     172     285 ..     172     313 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.47
                    -EEEE--SHHHHHHHHHHHTTT CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaeng 22
                    ki ++G+G+ G  +A+ l+++ 
      EHU01152.1  7 KIVIVGGGAGGLEMATQLGHKL 28
                    799************9998876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00078
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSB..TTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC- CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehen..vkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgll 93 
                     +ia++G+G+ G  l++ l+++ ++ + +++++   e++n +  +  ++ Lp   lp  + a ++ + +  g++++   + ++a ++ l++ +g  
      EHU01152.1 172 NIAIVGGGATGVELSAELHNAVKQLHSYGYKALDSEALNVTLVEagERILPA--LPPRISAAAHQELSKLGVRVLTQTMVTSADKQGLHTKSGEF 264
                     59******************************99999999865422677885..88888888888777777777765554444444444444444 PP

                     -TT-EEEE........---SE CS
  NAD_Gly3P_dh_N  94 kkkailvs........liKGi 106
                      +   +v+         +KGi
      EHU01152.1 265 IEADLMVWaagikapdFMKGI 285
                     334444444555566667777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3519.25
//
Query:       EHU01153.1  [L=180]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-11   43.0  17.1      3e-11   43.0  17.1    2.1  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
    5.1e-05   22.9  14.9    5.1e-05   22.9  14.9    2.2  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
     0.0036   17.3  15.5     0.0036   17.3  15.5    2.3  2  Gly-zipper_Omp   Glycine zipper
  ------ inclusion threshold ------
       0.02   14.6   0.6       0.02   14.6   0.6    1.5  2  TraT             Enterobacterial TraT complement resistance p
        2.5    7.6   5.5        5.9    6.4   2.3    2.0  2  DUF533           Protein of unknown function (DUF533)
        3.9    5.6   4.8        1.8    6.7   0.0    2.0  2  Fusion_gly       Fusion glycoprotein F0


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   5.1         6   1.8e+04      26      34 ..      10      18 ..       5      25 .. 0.53
   2 !   43.0  17.1   9.9e-15     3e-11       2      42 .]      73     113 ..      72     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 6
  Rick_17kDa_Anti 26 GavvGAaaG 34
                     G+ v Aa+G
       EHU01153.1 10 GIGVAAALG 18
                     333334444 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 9.9e-15
  Rick_17kDa_Anti   2 GaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnaig 42 
                      G ++GA+aGgv+G+++ggg+gr +++v+GA+aG++aGn+++
       EHU01153.1  73 GSVLGAVAGGVLGHQFGGGRGRDVATVAGALAGGYAGNQVQ 113
                      99**************999********************96 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.6     0.049   1.5e+02       5      22 ..       7      26 ..       3      36 .. 0.65
   2 !   22.9  14.9   1.7e-08   5.1e-05       2      46 .]      69     111 ..      68     111 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.049
                     XXXXXX..XXXXXXXXXXXX CS
  Gly-zipper_YMGG  5 rGAaiG..AaaGAvvGaliG 22
                     +G +iG  Aa+G ++ a i+
       EHU01153.1  7 AGIGIGvaAALGVAAVASIN 26
                     45555555777777777666 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.7e-08
                      ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-H CS
  Gly-zipper_YMGG   2 gavrGAaiGAaaGAvvGaliGsgggkGAaiGAaaGalaGgaiGaq 46 
                      ++++G + GA+aG v+G ++G  gg+G  +  +aGalaGg++G+q
       EHU01153.1  69 NRIAGSVLGAVAGGVLGHQFG--GGRGRDVATVAGALAGGYAGNQ 111
                      7899*****************..88998888899*********97 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   5.0      0.99     3e+03      21      34 ..       8      21 ..       4      26 .. 0.72
   2 !   17.3  15.5   1.2e-06    0.0036       2      38 ..      73     112 ..      72     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.99
  Gly-zipper_Omp 21 gtGaliGAavGaav 34
                    g+G+ ++Aa+G a+
      EHU01153.1  8 GIGIGVAAALGVAA 21
                    67777777777654 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.2e-06
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavg...grgtGaliGAavGaavGgli 38 
                     G+++GA+aG+++G   g   gr++ +++GA +G+++G+++
      EHU01153.1  73 GSVLGAVAGGVLGHQFGggrGRDVATVAGALAGGYAGNQV 112
                     7777777777777754434557999999999999999987 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.6       2.5   7.3e+03     117     127 ..      10      21 ..       3      28 .. 0.42
   2 ?   14.6   0.6   6.8e-06      0.02      80     137 ..      66     123 ..      55     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.5
        TraT 117 gl.vGglvgaia 127
                 g+ v++++g++a
  EHU01153.1  10 GIgVAAALGVAA 21 
                 222233333333 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.8e-06
        TraT  80 aaegalkaGfggalagaaagaaigaanggsagaalggglvGglvga.iagalvedvtYl 137
                 + e+ +++   ga+ag+++g ++g+   g   a+++g+l+Gg++g  ++g l + +tY+
  EHU01153.1  66 QDENRIAGSVLGAVAGGVLGHQFGGG-RGRDVATVAGALAGGYAGNqVQGGLQDRDTYT 123
                 45555666667899999999999999.66777889999******976888888889997 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.026        77      28      56 ..       8      36 ..       1      72 [. 0.66
   2 ?    6.4   2.3     0.002       5.9       4      51 ..      76     118 ..      69     156 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.026
      DUF533 28 alklGglAalGglAykayqnwqanqqeaa 56
                 + +G +AalG+ A+  ++   ++ q a+
  EHU01153.1  8 GIGIGVAAALGVAAVASINVFDRGPQYAQ 36
                567999********999996655544222 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.002
      DUF533   4 ggaaaggllglllGskkgrklgkkalklGglAalGglAykayqnwqan 51 
                  ga+agg+lg  +G+++    g+ ++++ + A+ Gg A +++q   ++
  EHU01153.1  76 LGAVAGGVLGHQFGGGR----GRDVATV-AGALAGGYAGNQVQGGLQD 118
                 35666666666666666....4444444.3577788888888743333 PP

>> Fusion_gly  Fusion glycoprotein F0
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.7      0.17   5.1e+02      87     106 ..       5      25 ..       1      27 [. 0.69
   2 ?    6.7   0.0   0.00059       1.8      60     100 ..      41      83 ..      33      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.17
                 CCC-EEEEH.HHH-EEEHHHH CS
  Fusion_gly  87 rflGvvlga.iAlgvAtaAqi 106
                  ++G+ +g+ +AlgvA  A i
  EHU01153.1   5 MLAGIGIGVaAALGVAAVASI 25 
                 577777775257899888876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00059
                 HHHHHHHHHHHCCEEEGGG..---SSSS-CCC-EEEEHHHH-E CS
  Fusion_gly  60 tpiadalnkieaeitvkne..sisskrkkrflGvvlgaiAlgv 100
                 tpi++++++  +e + +    +   + ++r++G vlga+A gv
  EHU01153.1  41 TPIKESIKQPRQECRNVTLthRRPVQDENRIAGSVLGAVAGGV 83 
                 9********99999887775567778899**********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1339.50
//
Query:       EHU01154.1  [L=434]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-42  143.4  45.0      8e-42  143.4  45.0    1.3  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.09   12.0  30.3       0.42    9.9   8.4    2.6  2  MFS_4     Uncharacterised MFS-type transporter YbfB
          1    9.9   3.9        1.1    9.8   0.6    2.7  2  FliC_SP   Flagellin structural protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4  45.0   1.3e-45     8e-42       3     352 ..      25     385 ..      23     386 .. 0.90
   2 ?   -3.6   0.2      0.67     4e+03     250     267 ..     401     418 ..     388     424 .. 0.45

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 1.3e-45
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 +++fl++l+r ++g+a+   ++ d g+s++++gl ++l++++++++++p   +++++G+ r+l + +++++l ++ +++a++ +  +++lr+l G++++
  EHU01154.1  25 VGYFLASLDRVNVGFAAL-QMNGDIGLSAAAYGLGAGLFFFAYCLFAVPCNMVMTKVGATRWLSAVMIAWGLLAAGMSMAQG-PvSFYLLRFLLGIAEA 121
                 799**************9.8*****************************************************666668644.447************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 ++fp+++++++  fpk+ rg+++++l+++  ++++lg +l+++l+   g      W+++f++ ++ ++ ++ l +l lp+ p e k+ sp+e +     
  EHU01154.1 122 GFFPGVIYYFTLCFPKRYRGQMVAILMMALPVSSVLGSPLSAALLNFDGlmnlrgWHWLFILEGAPAVALGFLTFLMLPRQPLEAKWLSPQESSwlrht 220
                 ******************************************9995555999999******************99******************999999 PP

       MFS_1 189 ...kgtgpaplvp...awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllal 281
                    +++  ap +p   ++  l+++ vl+ l ++ l+++++++gl  + p +  ++++ls ++++gl+ a++++v+  ++ l+gr sd +g  rrl  a 
  EHU01154.1 221 maeEQKSAAPTTPrvsLFATLFSPHVLL-LTLIYLGGTAVTNGLALWQPQI-IKTFNLS-VIQIGLVNAIPFAVASLAMYLWGRHSDQTGE-RRLHTA- 314
                 99866666666668889********997.7777777788***********7.*******.****************************997.444444. PP

       MFS_1 282 lllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 + lll+a gla      + ++ +l+++++++ +++++ ++++a+a++++p+++a+ ++g +n +++lg ++g
  EHU01154.1 315 FPLLLGATGLAASMYV-THLWPMLMVLCLTItAASMIKGPFWAMATEMIPASAAAVVIGQINALNNLGVFVG 385
                 4444444444444444.478889999999999*************************************998 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.67
       MFS_1 250 lallalvgailallagrl 267
                 +al+ l+ + ++ ++g+l
  EHU01154.1 401 YALTPLMLVTSCACLGAL 418
                 333333333333333333 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  12.2   0.00014      0.82      19     170 ..      44     200 ..      42     223 .. 0.67
   2 ?    9.9   8.4     7e-05      0.42     241     349 ..     294     404 ..     287     420 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsa.gaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvl...vfgsslvlahaaaa 113
                 +  + +ls+++ gl a   +  Y + a+   + + + ga+R  l a ++a  ll++ m+++++ + f l+Rfl+G+a A  +   +   +l++ +    
  EHU01154.1  44 MNGDIGLSAAAYGLGAGLFFFAYCLFAVPCNMVMTKvGATRW-LSAVMIAWGLLAAGMSMAQGPVSFYLLRFLLGIAEAGFFpgvIYYFTLCFPK--RY 139
                 556677888888888888888888888877665555145555.99**********************************9764436666666666..55 PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvllllqlglsasslWlal....avlsavllllvalllp 170
                 r + v  l+ a +   ++ s l ++ll+  gl +   W +l    ++ +++l  l +l+lp
  EHU01154.1 140 RGQMVAILMMALPVSSVLGSPLSAALLNFDGLMNLRGWHWLfileGAPAVALGFLTFLMLP 200
                 5555555666666666666666666666555554444433300114445555555566666 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 7e-05
       MFS_4 241 vgvlvwlrvakrsglrralaa.allieavgvllsllspsplglivssvllGltflait.alvlqlarelappat.rrllglmTasfgigQilGpllasl 336
                 +++++w r ++++g rr+ +a  ll+ a g+++s+  + + ++++ ++ l  t   ++     ++a e++p +    ++g++ a   +g  +G  l++l
  EHU01154.1 294 LAMYLWGRHSDQTGERRLHTAfPLLLGATGLAASMYVTHL-WPMLMVLCLTITAASMIkGPFWAMATEMIPASAaAVVIGQINALNNLGVFVGTWLIGL 391
                 678**********9999876626999999****9997665.77777777666655444145567788888877758899******************** PP

       MFS_4 337 laeatgslalall 349
                 +   tgs+++al 
  EHU01154.1 392 IRTSTGSFTYALT 404
                 *********9975 PP

>> FliC_SP  Flagellin structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.39   2.3e+03       6      13 ..     256     264 ..     255     267 .. 0.75
   2 ?    9.8   0.6   0.00019       1.1      26      42 ..     363     379 ..     338     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.39
     FliC_SP   6 GTAvtn.Lt 13 
                 GTAvtn L+
  EHU01154.1 256 GTAVTNgLA 264
                 9****7355 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00019
     FliC_SP  26 qqsaatamvaQINAvNk 42 
                  +saa+  + QINA+N+
  EHU01154.1 363 PASAAAVVIGQINALNN 379
                 5799999*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3172.86
//
Query:       EHU01155.1  [L=1149]
Description: transcription-repair coupling factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-28   98.1   0.0    1.8e-27   95.6   0.0    2.4  3  TRCF            TRCF domain
    6.5e-25   87.7   0.0    2.6e-24   85.8   0.0    2.1  1  CarD_CdnL_TRCF  CarD-like/TRCF domain
    1.6e-21   76.2   0.0    3.7e-21   75.1   0.0    1.7  1  UvrB_inter      UvrB interaction domain
      6e-21   74.9   1.5    1.8e-17   63.6   0.4    2.4  2  Helicase_C      Helicase conserved C-terminal domain
    2.9e-19   69.5   0.0    6.7e-19   68.3   0.0    1.7  1  DEAD            DEAD/DEAH box helicase
    9.8e-12   45.2   0.0    2.4e-11   43.9   0.0    1.7  2  ResIII          Type III restriction enzyme, res subunit
      5e-07   29.7   0.3    1.5e-05   24.9   0.0    2.7  2  UB2H            Bifunctional transglycosylase second domain
    0.00055   18.8   0.0    0.00079   18.2   0.0    1.3  1  SNF2_N          SNF2 family N-terminal domain
     0.0015   17.8   0.0     0.0029   16.8   0.0    1.4  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase


Domain annotation for each model (and alignments):
>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         9   1.8e+04      31      45 ..     558     572 ..     554     574 .. 0.82
   2 ?   -1.7   0.0         2     4e+03      39      58 ..     667     686 ..     662     696 .. 0.76
   3 !   95.6   0.0   8.8e-31   1.8e-27       1      93 [.    1006    1098 ..    1006    1100 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9
        TRCF  31 eeeldeleeeLiDrF 45 
                  e+++++++eL D +
  EHU01155.1 558 AEKVRDVAAELLDIY 572
                 688999999999988 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2
        TRCF  39 eeLiDrFGklpeevenLlev 58 
                 ++ +DrF + p  +e L + 
  EHU01155.1 667 DNFRDRFANWPVRIEMLSRF 686
                 67899999999998888655 PP

  == domain 3  score: 95.6 bits;  conditional E-value: 8.8e-31
        TRCF    1 ldvdalipeeYipdeserlelYkriasieteeeldeleeeLiDrFGklpeevenLlevarlkllakklgiekikekkkkleitfsekakidve 93  
                  l+++al+pe++ipd+++rl+lYkr+as+eteeel+el+ e+iDrFG lp++++nLl++a l++ a+ +g++ki++++k+  + f++++++d++
  EHU01155.1 1006 LRMPALLPEDFIPDVNTRLSLYKRVASAETEEELQELKVEMIDRFGLLPDPARNLLDIAVLRMKARVVGVRKIEASDKGGYFDFAPHNSVDPA 1098
                  6899************************************************************************************99986 PP

>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   1.3e-27   2.6e-24       1      96 []     477     572 ..     477     572 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 1.3e-27
  CarD_CdnL_TRCF   1 lkvGDyVvhedhGiGriegiekrevegaekeylvleyadkkgdklyvPvdqldlirkyiske..epkldklggkrwektkekakkgvkeeaaelv 93 
                     l++G+ Vvh +hG+Gr+ g+++ e+ g + eyl l ya+  ++klyvPv++l+li++y++    ++ l+klg+ +w+++++ka ++v++ aael+
      EHU01155.1 477 LHPGQPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYAN--DAKLYVPVSSLHLISRYAGGAdeNAPLHKLGSDAWSRARQKAAEKVRDVAAELL 569
                     689************************************..89****************8889999***************************** PP

  CarD_CdnL_TRCF  94 kly 96 
                     ++y
      EHU01155.1 570 DIY 572
                     987 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.9e-24   3.7e-21       2      91 .]     129     217 ..     128     217 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.9e-24
  UvrB_inter   2 elkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                  +++gqk++r+ l  +L + +Y++ d+++++G+++ rG  +++fp+  +++++ri+ff+dei+s+r +d  ++++le + +i ++Pa++f
  EHU01155.1 129 VMQQGQKLSRDRLRDQLDQTGYRHVDQVMEHGEYATRGALLDLFPMG-SDQPYRIDFFDDEIDSLRLFDVDSQRTLEAVPAINLLPAHEF 217
                 5799*******************************************.5***************************************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00054       1.1      12      73 ..     645     710 ..     636     715 .. 0.84
   2 !   63.6   0.4   9.3e-21   1.8e-17       6     110 ..     803     906 ..     796     907 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00054
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                   e+++++ + v+t+  +++  + ++ ++    +++ +l    +++e+++il++  +g++dvLi t
  EHU01155.1 645 AVENNKQVAVLVPTTLLAQQhYDNFRDRFanwPVRIEMLSRFRSAKEQNQILQEASEGKIDVLIGT 710
                 56788999999999996665677777777767899999**************************99 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 9.3e-21
                 HHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyi 101
                 l     +  +gg+++   n ++++ek  + l e   + ++a+ hg++  ++ e+++++f +++++vL++t+++e+Gidip +n++i+  ++ +++++++
  EHU01155.1 803 L----REILRGGQVYYLYNDVENIEKaSQRLAELVpEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADhFGLAQLH 897
                 3....34469************999884555333369******************************************************899***** PP

                 HHHTTSSST CS
  Helicase_C 102 qriGRtgRa 110
                 q +GR+gR 
  EHU01155.1 898 QLRGRVGRS 906
                 ********5 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   3.4e-22   6.7e-19       1     172 [.     602     762 ..     602     766 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 3.4e-22
                 -HHHHHHHHHHHTT......CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgg......gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 t+ Q +ai+++l++       d lv++++G GKT++++ +++ +v     ++++++ +++Pt+ La+q+++n++ ++ +  +r++++    +a++q + 
  EHU01155.1 602 TPDQTQAINAVLSDmcqplaMDRLVCGDVGFGKTEVAMRAAFLAV-----ENNKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQNQI 695
                 789*********555555657888******************777.....67889***********************877666666555555555555 PP

                 H...HTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 x...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD  94 l...dng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 l   ++g +d+++gt++ l++ ++      +++ +l++DE +r+     ++ i+++ + ++           ++ l+AT+  ++
  EHU01155.1 696 LqeaSEGkIDVLIGTHKLLMSDIK-----WHDLGLLIVDEEHRFGVR-HKERIKAMRADVD-----------ILTLTATPIpRT 762
                 52224447*********9999554.....99***************9.9999999988882...........999999987555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       6.2   1.2e+04      52      79 ..      37      64 ..      32      73 .. 0.82
   2 !   43.9   0.0   1.2e-14   2.4e-11       2     169 ..     599     758 ..     598     760 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6.2
                ....-EEEEESSHHHHHHHHHHGGGGTG CS
      ResIII 52 gkeekflflvprkslleqtleefkkfls 79
                ++   +l++ p ++   ++l+e+++f++
  EHU01155.1 37 RHAGPVLMITPDTQTALRLLDEIRQFTD 64
                5566899999999999999999999986 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 1.2e-14
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--. CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka. 96 
                 +e  + Q++ai+++l+ + +      l+    G GKT va++++    +++k  ++ +lvp++ l +q +++f++ + +   +    + + s +++++ 
  EHU01155.1 599 FETTPDQTQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNK--QVAVLVPTTLLAQQHYDNFRDRFANWPVRiemLSRFRSAKEQNQi 695
                 567899*********99988889999********************999855..9******************99998876555665555555555556 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                  +e ++ ++++l+ t + l +d+          + +   ++i+DE Hr+g   + ++i+ +  +  +l lTATp
  EHU01155.1 696 lQEASEGKIDVLIGTHKLLMSDI----------KWHDLGLLIVDEEHRFGV-RHKERIKAMRADVDILTLTATP 758
                 78999999*******99999999..........556666************.88888999989999*******9 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.6e-09   1.5e-05       2      42 ..     131     171 ..     130     205 .. 0.91
   2 ?    1.8   0.0      0.12   2.4e+02      30      63 ..     579     613 ..     571     616 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.6e-09
        UB2H   2 ypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriel 42 
                 ++G++ls++ l++ L+++gYr+v++v + Geya++g+ ++l
  EHU01155.1 131 QQGQKLSRDRLRDQLDQTGYRHVDQVMEHGEYATRGALLDL 171
                 69********************************9987776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
        UB2H  30 pG.eyavsgnriellrRgFdfpdgaeparrvrlrf 63 
                 +G  ++ ++++++l++ +F+f   +++++ ++  +
  EHU01155.1 579 AGfAFKHDREQYQLFCESFPFETTPDQTQAINAVL 613
                 454688999****************9999987665 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     4e-07   0.00079      98     221 ..     619     764 ..     300     807 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4e-07
                 -................................EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHHH CS
                 x................................xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  98 p................................tLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsre 163
                 p                                + ++vP+  l++q +++++   ++  +r+ + +  ++ k++n+ ++++   + dv+i t + l   
  EHU01155.1 619 PlamdrlvcgdvgfgktevamraaflavennkqVAVLVPTtLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQNQILQEASEGKIDVLIGTHKLLM-- 715
                 0555555555555555555555555555555556689999788999******9999999********999************************999.. PP

                 T......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 164 aelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsle 221
                        s +k  +   +++DE h+++  +++  +a++  +    + lt+TPi++ l+
  EHU01155.1 716 -------SDIKWHDLGLLIVDEEHRFGVRHKERIKAMR--ADVDILTLTATPIPRTLN 764
                 .......677889999*************888888888..788999********9765 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0029      86     153 ..     842     908 ..     825     918 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
  ERCC3_RAD25_C  86 yGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvli.qisshfgsrrqeaqrlGriLrakk 153
                    +G+++e++  +++++f+++ ++n+++   + +t iD+P+an +i   + hfg   q  q  Gr+ r+ +
     EHU01155.1 842 HGQMRERDLERVMNDFHHQ-RFNVLVCTTIIETGIDIPTANTIIiERADHFG-LAQLHQLRGRVGRSHH 908
                    5777777789******886.8*******************977614555565.5677777788887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 7336.90
//
Query:       EHU01156.1  [L=58]
Description: hypothetical protein CKS_4252 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 420.27
//
Query:       EHU01157.1  [L=399]
Description: membrane component of an ABC superfamily outer membrane-specific lipoprotein transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-13   49.1   0.8    8.7e-13   49.1   0.8    2.0  2  MacB_PCD     MacB-like periplasmic core domain
    4.2e-11   43.2   4.9    4.2e-11   43.2   4.9    2.9  3  FtsX         FtsX-like permease family
  ------ inclusion threshold ------
        0.1   12.9   1.4       0.58   10.5   0.1    2.4  2  Sigma_reg_N  Sigma factor regulator N-terminal
       0.12   10.3   0.1       0.16    9.9   0.1    1.1  1  HPS6         Hermansky-Pudlak syndrome 6 protein


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.8   1.9e-16   8.7e-13       1     170 [.      27     208 ..      27     239 .. 0.70
   2 ?   -1.6   1.7      0.65   2.9e+03       5      22 ..     270     287 ..     268     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.9e-16
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdl..gnlvtvtpgkgsges..lsdpdvealrrevp.veavapvv.....tvrgggsg.eeevtvv 88 
                 s+l+ +Gi++Gv a+i+++s+++g+ + ++ +i +l  +  + +t ++gs ++  ++++   al+  ++ v+++ap       +  ++  + +   ++ 
  EHU01157.1  27 SWLSTIGITLGVLAMITVLSVMNGFERELEGNILGLmpQ--ALITSNTGSINPqqFPAS---ALK--LNgVDRIAPLTtgnvvL-QSAH-NvSV-GVML 115
                 789*******************************88643..445555544444114544...442..355******85454321.1111.1222.3467 PP

    MacB_PCD  89 gvdpdyfk.vfglklaeGrffteadlrggpnvvvigeelaerlf.pvGdtirl.................kpftVvGvledppgsgsalgddavylplt 168
                 g +pd+ + +  +  +     +++ l+ g++ v++ge+la +l  + Gd+irl                 + ftV+G + +     s  +  +++++ +
  EHU01157.1 116 GIQPDEKDpLTPF--LVN--TPQSVLQPGQYNVILGEQLASQLGvKRGDQIRLmvpsvsqftpmgrvpsqRLFTVAGTYAAN----SEVDGYQILVNQQ 206
                 7888887744455..333..345666679999**********99988**************99999888666******9442....4456677888866 PP

    MacB_PCD 169 tl 170
                 ++
  EHU01157.1 207 DA 208
                 55 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.65
    MacB_PCD   5 vLGiaiGvaaviaivslg 22 
                 +L+++i+vaa+ +i+slg
  EHU01157.1 270 LLSLIIAVAAFNIITSLG 287
                 699***********9998 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.29   1.3e+03      68      88 ..      27      47 ..       6      55 .. 0.64
   2 ?    0.9   0.3      0.14   6.4e+02      32      52 ..     268     288 ..     263     293 .. 0.48
   3 !   43.2   4.9   9.3e-15   4.2e-11       3      96 .]     296     392 ..     294     392 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
        FtsX 68 tvliiivlllllallagllsi 88
                ++l +i++ l ++ ++++ls+
  EHU01157.1 27 SWLSTIGITLGVLAMITVLSV 47
                444455555555555444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
        FtsX  32 alviGlglgllaaqllsdvll 52 
                 +l+++l+++++a +++ +++l
  EHU01157.1 268 GLLLSLIIAVAAFNIITSLGL 288
                 444444444444444444443 PP

  == domain 3  score: 43.2 bits;  conditional E-value: 9.3e-15
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllss...vfsselkisidlitvliiivlllllallagllsiskilkkep 96 
                 e++il++ G++++q++ +++++++  +++++++G +lg+l+a  l++++  +   +++ +l++ i+l +v++i++ +++ all++l+++++++  +p
  EHU01157.1 296 EVAILQTQGLTRRQIVAVFMVQGASAGIIGTLLGALLGVLLASQLNNLMPVIglfLDGAALPVDINLWQVVTIAFSAMVSALLSTLYPSWRAAAVQP 392
                 99********************************999999999866666655211556*********************************998776 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00013      0.58       7      34 ..      23      50 ..      18      53 .. 0.92
   2 ?    0.2   0.2      0.21   9.2e+02      16      42 ..     269     295 ..     260     304 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
  Sigma_reg_N  7 akrksilrivlislivlllifvilvvtl 34
                 +++ s+l+++ i+l+vl +i+v++v+++
   EHU01157.1 23 GRFVSWLSTIGITLGVLAMITVLSVMNG 50
                 7999********************9975 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.21
  Sigma_reg_N  16 vlislivlllifvilvvtllylaekeg 42 
                   l+sli++++ f i+ +++l  +ek+g
   EHU01157.1 269 LLLSLIIAVAAFNIITSLGLLIMEKQG 295
                  578888888888888666666566655 PP

>> HPS6  Hermansky-Pudlak syndrome 6 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   3.6e-05      0.16     244     304 ..     247     308 ..     226     346 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.6e-05
        HPS6 244 kslssakesDFk..klvldlvgllsslepleihsfa.vtscgeLllllstgvvsllqkdGvlRk 304
                 k+ ++ k++ F+  ++  +++gll sl   ++ +f  +ts g Ll+++++g v +lq++G +R+
  EHU01157.1 247 KDWRERKGDLFQavRMEKNMMGLLLSLII-AVAAFNiITSLG-LLIMEKQGEVAILQTQGLTRR 308
                 45666667666622345678999999865.555555156666.*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3028.46
//
Query:       EHU01158.1  [L=234]
Description: ATP-binding component of an ABC superfamily outer membrane-specific lipoprotein transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-36  124.2   0.0    7.7e-36  123.6   0.0    1.2  1  ABC_tran      ABC transporter
    4.5e-07   30.0   0.0      0.028   14.2   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    3.9e-06   26.5   0.2     0.0038   16.7   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00017   21.2   0.1    0.00039   20.1   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0013   19.2   2.0     0.0047   17.3   2.0    1.8  1  AAA_16        AAA ATPase domain
     0.0025   18.1   0.9       0.06   13.6   0.9    2.2  1  AAA_22        AAA domain
     0.0028   17.8   0.1       0.06   13.6   0.1    2.4  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0033   17.3   0.0     0.0058   16.6   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
     0.0069   16.5   1.6      0.054   13.7   1.6    2.1  1  AAA_33        AAA domain
  ------ inclusion threshold ------
       0.02   14.6   0.1        1.1    8.9   0.0    2.2  2  PRK           Phosphoribulokinase / Uridine kinase family
      0.024   15.1   0.0      0.038   14.5   0.0    1.2  1  AAA_23        AAA domain
      0.044   13.1   0.0      0.081   12.3   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.047   13.4   0.3       0.57    9.9   0.0    2.1  2  AAA_30        AAA domain
      0.056   13.5   0.0        0.1   12.7   0.0    1.4  1  DUF87         Helicase HerA, central domain
       0.13   12.4   0.0       0.25   11.4   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
       0.14   12.1   0.2       0.29   11.0   0.2    1.5  1  NACHT         NACHT domain
       0.18   11.5   0.0       0.26   10.9   0.0    1.3  1  AAA_15        AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.0   7.3e-39   7.7e-36       1     136 [.      26     174 ..      26     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 7.3e-39
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esd 82 
                 l+nv++++++ge++aivG++G+GKStLl ll gl +pt+G++ +dg++l++    ++ e  ++e+g++ q ++l p+ ++ en             e++
  EHU01158.1  26 LRNVNFDVQPGELMAIVGSSGSGKSTLLHLLGGLDTPTAGDVVFDGRSLNSmsssDKAELRNRELGFIYQFHHLLPDFSALENvamplligktakgEAQ 124
                 78************************************************99999999999********************************999999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++ ++l+ +gl++ ++++     s+LSgG++qrva+aral+++p+l+++DEpt
  EHU01158.1 125 ARAREMLAAVGLEHRAAHRP----SELSGGERQRVAIARALVNRPRLVMADEPT 174
                 99999999999999666665....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.6e-05     0.028       1      27 [.      38      61 ..      38     105 .. 0.73
   2 !   14.1   0.0   2.8e-05      0.03     234     301 ..     144     209 ..     119     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldr 27
                l++++G  gsGKS+LL +l +l   d+
  EHU01158.1 38 LMAIVGSSGSGKSTLLHLLGGL---DT 61
                589****************998...33 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.8e-05
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSpll 301
                 ++elS G ++  a++ al  ++   +l+  DEp  +L+ +   +++ell +++ r g+ ++++TH+ +l
  EHU01158.1 144 PSELSGGERQRVAIARALVNRP---RLVMADEPTGNLDARNADTIFELLgELNVRQGTAFLVVTHDLHL 209
                 5688999999989999999888...9***********************9888889**********988 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0015       1.6      25      41 ..      37      53 ..      26      58 .. 0.82
   2 !   16.7   0.0   3.6e-06    0.0038     134     211 ..     144     219 ..      73     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
                SEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnll 41
                ++ aivG+ GSGKs ll
  EHU01158.1 37 ELMAIVGSSGSGKSTLL 53
                4689**********987 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3.6e-06
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH..CTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek..sknaQfivislreemlekadklvgv 211
                 +++LSgGe++ va+a       v++  l++ De   +LD++n   + ell e   ++ + f+v++++ ++ +++ + + +
  EHU01158.1 144 PSELSGGERQRVAIARA----LVNRPRLVMADEPTGNLDARNADTIFELLGELnvRQGTAFLVVTHDLHLAKRMTRQMEM 219
                 449*******9998754....467777999********************9761156699******99999998887766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.7e-07   0.00039      15      39 ..      29      53 ..      24      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.7e-07
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                  +++++ + + ++G sGsGKSTll
  EHU01158.1 29 VNFDVQPGELMAIVGSSGSGKSTLL 53
                5678888889**************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.0   4.5e-06    0.0047      23     154 ..      34     217 ..      21     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.5e-06
      AAA_16  23 rp.elvllsGesGvGKsslvrellralekd............ggiflrgkcdql..esa................ipysalaqalareellrqlldeae 90 
                 +p el+ ++G sG+GKs+l+  l   l +             +          +  + +                 ++++  +al++   +  l  +++
  EHU01158.1  34 QPgELMAIVGSSGSGKSTLLHLLG-GLDTPtagdvvfdgrslN----------SmsS-SdkaelrnrelgfiyqfHHLLPDFSALEN-VAMPLLIGKTA 119
                 344899**************8887.455554543333322221..........2221.13334444334433333333555666633.66666666666 PP

      AAA_16  91 saeleawrekleeala.................................avpelagaea........srllellkrll.allsrderplvlvlDdlqwa 147
                 + e++a +++ ++a++                                          a         r ++++ +ll +l  r++  +++v  dl+ a
  EHU01158.1 120 KGEAQARAREMLAAVGlehraahrpselsggerqrvaiaralvnrprlvM--------AdeptgnldARNADTIFELLgELNVRQGTAFLVVTHDLHLA 210
                 66666666666666668998888777777777777766666666666442........03333345577777777777666666566699999999999 PP

      AAA_16 148 deaslql 154
                 + +++q+
  EHU01158.1 211 KRMTRQM 217
                 9999886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.9   5.7e-05      0.06       6     128 ..      37     203 ..      33     213 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.........................................erpevv....fvtlpsstsskdllre 59 
                  +++++G sG+GK+tll  l   ++  + a +                                         +    v    ++  +++++ +  +re
  EHU01158.1  37 ELMAIVGSSGSGKSTLLHLLGGLDT--PTAGDvvfdgrslnsmsssdkaelrnrelgfiyqfhhllpdfsaleN----VamplLIGKTAKGEAQARARE 129
                 5789*************99988763..33333677777777777777777777777777777777755543311....133456666666677777777 PP

      AAA_22  60 llralglelka.....erlsseellealeqalrarav...ielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliLv 128
                 +l a+gle+ a     e    e+ + a+++a         ++l++ DE    l+ +  ++++e L +l    r+g+++++v
  EHU01158.1 130 MLAAVGLEHRAahrpsELSGGERQRVAIARA-----LvnrPRLVMADEPTGnLDaRnaDTIFELLGELNV--RQGTAFLVV 203
                 7777777777733332222222222333333.....2344447777776555655234555555555555..555555554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   5.7e-05      0.06      31      88 ..     145     189 ..     124     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-05
     SbcCD_C  31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ++lSGGe+q    +a+a al           +++rlv+ DE  ++lD+++++t++ell
  EHU01158.1 145 SELSGGERQR---VAIARAL----------VNRPRLVMADEPTGNLDARNADTIFELL 189
                 5666666632...3333222..........3479*********************998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.5e-06    0.0058      89     121 ..      25      58 ..      12      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.5e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   l++++  ++  +++++vG+SG GKStL+  l +
   EHU01158.1  25 VLRNVNFDVQPgELMAIVGSSGSGKSTLLHLLGG 58 
                  56666777776699***************98866 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.6   5.1e-05     0.054       2     116 ..      39     213 ..      38     227 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt...............................................................lrrrl 37 
                 + +vG +GsGKstl++ l        l+++t                                                               +r++l
  EHU01158.1  39 MAIVGSSGSGKSTLLHLLG------GLDTPTagdvvfdgrslnsmsssdkaelrnrelgfiyqfhhllpdfsalenvamplligktakgeaqarAREML 131
                 678************9874......33444433334444457777777788888888888888888888888888888888777777776666633333 PP

      AAA_33  38 fg..tdqqsktdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvvetdeetlkeRla 116
                 ++   + +   ++++++   +q++ ++ar    + r v++d +  nl++r+ + +++l+ +l+v+    ++ +  +++ ++  
  EHU01158.1 132 AAvgLEHRAAHRPSELSGGERQRV-AIARALVNRPRLVMADEPtgNLDARNADTIFELLGELNVRQGTAFLVVTHDLHLAKRM 213
                 333344444446777888888888.8888888999999998877788889889999999999998766555555555444444 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0011       1.1       2      20 ..      39      57 ..      38     120 .. 0.72
   2 ?    3.8   0.0     0.041        43     135     155 ..     200     220 ..     193     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
         PRK  2 IgvagsSGaGkttvarkle 20
                +++ gsSG+Gk+t+ + l 
  EHU01158.1 39 MAIVGSSGSGKSTLLHLLG 57
                689**********998764 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.041
         PRK 135 yvdisidlelarklqRDiaeR 155
                 ++++ +dl+la++++R ++ R
  EHU01158.1 200 FLVVTHDLHLAKRMTRQMEMR 220
                 8999**************999 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.6e-05     0.038      11      37 ..      27      54 ..      21      58 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.6e-05
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTild 37
                r++++d  +  l +I+G  G+GK+T+l 
  EHU01158.1 27 RNVNFDVQPgELMAIVGSSGSGKSTLLH 54
                5677777774599*************96 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.7e-05     0.081      31      58 ..      29      55 ..      18      56 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
                  EEEEGGGS-.SEEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE 31 lvldlkkmashllvaGatgsGKStalnt 58
                  + +d ++ +  + ++G++gsGKSt l+ 
    EHU01158.1 29 VNFDVQPGE-LMAIVGSSGSGKSTLLHL 55
                  556666666.789************986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00054      0.57      18      44 ..      36      62 ..      21      84 .. 0.81
   2 ?    1.6   0.1      0.18   1.9e+02      58     114 ..     126     191 ..     114     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00054
      AAA_30 18 drvavltGpAGtGKttalkalreawea 44
                  +++++G  G+GK+t+l  l  + + 
  EHU01158.1 36 GELMAIVGSSGSGKSTLLHLLGGLDTP 62
                56899*************988666555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.18
      AAA_30  58 aAkvLaeelgieastiakllkrlk........grarlepgtllivDE.agmvdtkqlaallkaaek 114
                  A+++ +++g+e +  ++  +  +        +ra +++ +l++ DE +g +d+++++++++ + +
  EHU01158.1 126 RAREMLAAVGLEHRAAHRPSELSGgerqrvaiARALVNRPRLVMADEpTGNLDARNADTIFELLGE 191
                 445555566665555555554444666777776667777899999996788899999988887655 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.6e-05       0.1      26      43 ..      39      56 ..      22      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.6e-05
       DUF87 26 lAilgsTGsGKSntvavL 43
                +Ai+gs+GsGKS++  +L
  EHU01158.1 39 MAIVGSSGSGKSTLLHLL 56
                8************99876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.25       2      21 ..      39      58 ..      38      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                +aivG + +GKStL+  l g
  EHU01158.1 39 MAIVGSSGSGKSTLLHLLGG 58
                69*************98866 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00028      0.29       2      18 ..      38      54 ..      37      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                l+++ G +GsGK+tLl+
  EHU01158.1 38 LMAIVGSSGSGKSTLLH 54
                789************98 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00025      0.26      18      43 ..      30      56 ..      25      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
      AAA_15 18 eidlsee.ltvliGkNnsGKSsileal 43
                  d+++  l+ ++G  +sGKS++l++l
  EHU01158.1 30 NFDVQPGeLMAIVGSSGSGKSTLLHLL 56
                44444446****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1735.70
//
Query:       EHU01159.1  [L=414]
Description: membrane component of an ABC superfamily outer membrane-specific lipoprotein transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-14   54.8   0.4    1.5e-14   54.8   0.4    2.5  3  MacB_PCD    MacB-like periplasmic core domain
    1.3e-13   51.2  12.8    2.8e-13   50.1   2.1    3.4  3  FtsX        FtsX-like permease family
  ------ inclusion threshold ------
       0.16   12.1   0.6       0.38   10.9   0.2    1.7  1  Arteri_GP4  Arterivirus glycoprotein


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.4   2.6e-18   1.5e-14       1     191 [.      27     240 ..      27     244 .. 0.75
   2 ?   -1.7   0.7      0.53   3.2e+03       7      30 ..     277     300 ..     274     310 .. 0.80
   3 ?    0.8   0.2     0.092   5.5e+02       4      42 ..     331     368 ..     328     403 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2.6e-18
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgk...gsgeslsdpdve.al..rrevp.veavapvv....tvrgggsgeeevtvv 88 
                 s+++ +Gia+Gva++i+ +s ++g+ + ++++i +        p+    + ++++    ++ ++   ++vp ++a+ap+v    ++ +g +  e+ +v 
  EHU01159.1  27 SVISTVGIALGVAVLIISLSAMNGFERELNKRILAV------VPHGeieAVNQPFQR--WQsLIapIEQVPgIAAAAPYVnftgLIESGAK-MEALQVK 116
                 78999**************************98833......333222222223332..22222222379********9988663344543.56699** PP

    MacB_PCD  89 gvdp.dyfkvfglkl.aeGrffteadlrggpnvvvigeelaerlf.pvGdtirl................kpftVvGvledppgsgsalgddavylplt 168
                 gvdp +++++  l+  +      ++ +++g++++++g ++a++l  + Gd i++                ++++V+G+l +    +++l+ + +++pl+
  EHU01159.1 117 GVDPaQEPRLSALPSfVTD--NAWSSFAAGKQQIILGGGIAKALNvKQGDWITImipnndgenkllqpkrIRLQVSGIL-Q---LSGMLDHSLALVPLA 209
                 *996588888888433555..455788889*************88999******************988888******9.4...346889999****77 PP

    MacB_PCD 169 tlqrrs........itvrlkdgadleaaaae 191
                 ++q+          i+++++d+ +++++ ++
  EHU01159.1 210 DAQQYLdmgdsvtgIALKMNDPFQAAKLVRA 240
                 77432245666777********999998776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.53
    MacB_PCD   7 GiaiGvaaviaivslgeglqasvl 30 
                  ++iGva++ ++ +l+ +++++ +
  EHU01159.1 277 VLVIGVACFNIVSTLVMAVKDKSS 300
                 589*****9999999988886655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.092
    MacB_PCD   4 tvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtv 42 
                 +v G+++Gv +   ++sl+ gl  +++  +  +g+++ +
  EHU01159.1 331 SVSGVVVGVLVALNLTSLMKGLE-TLTGHHLLAGDIYFI 368
                 789*****************999.665555535666655 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.2    0.0039        24      63      88 ..      22      47 ..       5      64 .. 0.73
   2 ?    1.4   0.3     0.075   4.5e+02      47      82 ..     251     283 ..     235     296 .. 0.56
   3 !   50.1   2.1   4.7e-17   2.8e-13       3      96 .]     301     407 ..     299     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0039
        FtsX 63 sidlitvliiivlllllallagllsi 88
                +++li+v+ +++++l +a+l++ ls+
  EHU01159.1 22 MVSLISVISTVGIALGVAVLIISLSA 47
                45667777777777777777755554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.075
        FtsX  47 lsdvllssvfsselkisidlitvliiivlllllall 82 
                 + ++++++   + +   i+ i  +  ++++l++ ++
  EHU01159.1 251 IKSWIGTY---GYMYRDIQMIRAIMYLAMVLVIGVA 283
                 55566666...3444444444444444444444333 PP

  == domain 3  score: 50.1 bits;  conditional E-value: 4.7e-17
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllss.............vfsselkisidlitvliiivlllllallagllsi 88 
                  i++lr+lG+k++ ++ ++++ +ll +l+++v+G+++g+l+a  l +++                +f + l+  + +++v+ +++ +++l lla+++++
  EHU01159.1 301 DIAVLRTLGAKDGLIRAIFIWYGLLAGLLGSVSGVVVGVLVALNLTSLMKGLetltghhllagdiYFIDFLPSELHWLDVFSVLITAIVLSLLASWYPA 399
                 69***********************************9999999666665554556655555555556******************************* PP

        FtsX  89 skilkkep 96 
                 +++++++p
  EHU01159.1 400 RRASRIDP 407
                 *****997 PP

>> Arteri_GP4  Arterivirus glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   6.3e-05      0.38     118     177 ..     329     391 ..     314     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.3e-05
  Arteri_GP4 118 fgnvsGvva...vcvnfteyvshvkektqrslvvdklrllhfltpsvvrwatvialll.ailla 177
                 +g vsGvv    v +n+t  ++ ++  t ++l +  +  + fl ps ++w  v ++l+ ai+l+
  EHU01159.1 329 LGSVSGVVVgvlVALNLTSLMKGLETLTGHHLLAGDIYFIDFL-PSELHWLDVFSVLItAIVLS 391
                 678999864333788***************************9.999******99875377775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3239.34
//
Query:       EHU01160.1  [L=277]
Description: deacetylase of acetyl-CoA synthetase, NAD-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-53  180.3   0.0    5.1e-53  179.6   0.0    1.3  1  SIR2          Sir2 family
    0.00027   20.7   0.0    0.00059   19.6   0.0    1.5  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6   0.0   5.7e-57   5.1e-53       1     177 []      50     223 ..      50     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 5.7e-57
                 -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHCC.TSS--HHHHHHHHHHHTT.CEEEEEES-SSSHHHHTT-SSEEE CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakeelaspealfskkllveevfyniarellae.eaepnaaHkalkklekkg.kllrliTQNiDgLekkaGskkvve 97 
                 GAGiS+esGi++fR+++Gl+++++ e++a+pe +++++ lv++ fyn++r++l++ e++pnaaH al++le+   +++ l+TQNiD+L+++aG+++v++
  EHU01160.1  50 GAGISAESGIRTFRAADGLWEEHRVEDVATPEGFRRDPALVQR-FYNARRQQLQQpEIQPNAAHLALAELEQVLgDNFFLVTQNIDNLHERAGNSRVLH 147
                 9******************************************.********9999**************9974499********************** PP

                 TTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCCBEEEEE--CTSB-SHHHHHHHHHHHH-SEEEEES--STSTT CS
        SIR2  98 lHGslakakcvkcekkldkeelqeeieaekvpecekcgkllkpdvvfFGealpdklkkliekveeadlllviGtSlkVap 177
                 +HG+l+k++c+++++ +d+   qe++++++ ++c+++ ++l+p+vv+FGe+    ++++++++e+adl+++iGtS +V+p
  EHU01160.1 148 MHGELLKVRCASSGQVIDW---QEDVTENDRCTCCQFPSVLRPHVVWFGEMPL-GMEDIYQALEQADLFIAIGTSCHVYP 223
                 ***************9999...7888899999******************988.9***********************98 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.6e-08   0.00059      61     121 ..     193     253 ..     184     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.6e-08
                   EESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT-.EEEEEESSCCCCTTCC- CS
  TPP_enzyme_M  61 gmlglhgskaanealeeaDlvlalGarfddirttgsepefapea.kiihididpaeigknyq 121
                   g + l g +  ++ale+aDl +a+G+ ++ +  +g  +e + ++   ++++ +p+++g+ + 
    EHU01160.1 193 GEMPL-GMEDIYQALEQADLFIAIGTSCHVYPAAGFVHEAKLQGaHTVELNLEPSQVGNEFA 253
                   54444.58899********************999977755555559************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2052.76
//
Query:       EHU01161.1  [L=295]
Description: tripeptide aminopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-10   41.5   0.0    1.7e-10   40.8   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
    1.3e-05   25.0   0.4    3.3e-05   23.7   0.1    1.8  2  Peptidase_M20  Peptidase family M20/M25/M40
     0.0003   19.9   0.1    0.00047   19.3   0.1    1.2  1  Peptidase_M42  M42 glutamyl aminopeptidase
  ------ inclusion threshold ------
      0.071   12.8   0.4       0.11   12.1   0.1    1.5  2  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   3.8e-14   1.7e-10       1      96 [.     205     293 ..     205     295 .] 0.93

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.8e-14
                 SEB-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs....aknvipdeaeakidiRllpgedpeevl 94 
                 ++++++a++ ++v g+++H+g a++ ++NA+e++ r+ a+l+++            + +++t +++G+    +   ++++ae++++iR  ++e  e+ +
  EHU01161.1 205 YENFNAASALVKVVGNNVHPGsAKNVMVNALELATRFSAALPAK------------EKPEWTDGYEGFfhlhQMKGTVEHAELHYIIRDFDTEAFEQRK 291
                 5799****************************************............999*****************************88888888776 PP

                 HH CS
   M20_dimer  95 ee 96 
                  +
  EHU01161.1 292 RT 293
                 65 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.37   1.6e+03       2      10 ..      75      83 ..      74      98 .. 0.74
   2 !   23.7   0.1   7.4e-09   3.3e-05      36      83 ..     139     184 ..     127     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.37
                   EEEES-BSS CS
                   xxxxxxxxx RF
  Peptidase_M20  2 lgsHlDvVp 10
                   + sH+D+ p
     EHU01161.1 75 FISHMDTSP 83
                   669****99 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 7.4e-09
                    TTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  36 ddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle 83 
                    +d+k+g++ ++ a+++l++  i   g i+++f+pdEE+g +G+ ++  
     EHU01161.1 139 ADDKAGIAEIMTAMARLAEGDIP-HGAIRVAFTPDEEIG-RGTSHFDV 184
                    59**************9998874.69***********99.77755433 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1     1e-07   0.00047     134     194 ..     140     201 ..     124     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-07
                    HHHHHHHHHHHHHHHHCTSS-S.SEEEEEEESTCTTTSHHHHHHHHHH--SEEEEEEEEEE- CS
  Peptidase_M42 134 Ddragvavllellkelkeeele.atvylvatvqEEvGlrGaktsaekikpdiaiavDvtaag 194
                    Dd+ag+a +++++ +l+e +++   + +++t  EE+G + +++ +e +  d a  vD + +g
     EHU01161.1 140 DDKAGIAEIMTAMARLAEGDIPhGAIRVAFTPDEEIGRGTSHFDVEGFAADWAYTVDGSDLG 201
                    **********************8889999*************************99987765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   4.8e+03       3      25 ..      59      83 ..      58      90 .. 0.71
   2 ?   12.1   0.1   2.6e-05      0.11      28      82 ..     132     184 ..     121     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
                   EEEESTTCE..SEEEEEEEE--B-T CS
  Peptidase_M28  3 iatlegkat..devlllgAHyDsvg 25
                   ++tl+++    + v+ + +H+D+ +
     EHU01161.1 59 MGTLPANVDwpTPVVGFISHMDTSP 83
                   5666666666344888999999976 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.6e-05
                    TCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHH CS
  Peptidase_M28  28 rgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafa 82 
                    +g+++ GAdD A  + ++  +ar+ +     p+  +r++f+  EE g   S++ +
     EHU01161.1 132 DGKTLLGADDKAGIAEIMTAMARLAEG--DIPHGAIRVAFTPDEEIGRGTSHFDV 184
                    667899*****9777777777776654..579*************9877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2174.77
//
Query:       EHU01162.1  [L=88]
Description: tripeptide aminopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-05   24.8   0.0    1.6e-05   24.7   0.0    1.0  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.1e-10   1.6e-05     133     206 ..       9      81 ..       3      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.1e-10
                    HHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH..TTTEEEEEEESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 133 splvkalaeaaeelfgekvelivsgpggtdarff..agiptvmifgpgsglaHspnEyvdledlekgikvlarlle 206
                    +++++++ +a+++  g ++ +++   ggtd + +  +g+p+  +f  g  ++H+ +E+ +l+ +++ ++v++rl+e
     EHU01162.1   9 PHIIDLALQAMRDC-GIEPVVKPIR-GGTDGSSLswKGLPCPNLFTGG-YNYHGKHEFASLNIMAQSVDVIVRLAE 81 
                    57899999*****7.*665555555.*********9899988556646.9**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 668.66
//
Query:       EHU01163.1  [L=374]
Description: cupin superfamily protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-102  342.9   0.0   2.5e-102  342.6   0.0    1.1  1  Cupin_4       Cupin superfamily protein
     0.0036   17.0   0.3       0.23   11.2   0.0    2.8  3  Cupin_2       Cupin domain
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.018   14.6   0.0    1.4  1  Cupin_1       Cupin
      0.032   13.9   0.0       0.15   11.7   0.0    2.0  2  Cupin_8       Cupin-like domain
      0.089   12.7   0.3       0.27   11.1   0.3    1.9  1  AraC_binding  AraC-like ligand binding domain
       0.15   12.5   0.0       0.93    9.9   0.0    2.1  2  JmjC          JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.6   0.0  8.4e-106  2.5e-102       2     319 .]      10     310 ..       9     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: 342.6 bits;  conditional E-value: 8.4e-106
                 HHHHHHTTTTS-EEE--S-CCCCCCHHHHHHHHCCHHCHHCCC.EECTCCEEEEECCCCEEEE-SSB-SCCCHHHHHHCCHCC.CTTEEEEC-HHHC-H CS
     Cupin_4   2 eeFlreyWqkkpllirralpafagllspddLaeLaeeeevearlikgerdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqLlqpfrfep 100
                  +F+++yWqk+p++++r++++f +++spd+La+La+e+ev++rl+  ++ +++w+vs+gp+e+  +++l++++w+lLvq+v++w++ +a+L+ pfrf+p
  EHU01163.1  10 PDFIQRYWQKRPVVLKRGFKNFIDPISPDELAGLAMENEVDSRLV--SQPNGKWQVSHGPFES--YDHLGENNWSLLVQAVNHWHEPSAALMRPFRFLP 104
                 69*******************************************..9999************..********************************** PP

                 HHHHHHHHHHHS-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-SCCCTTSSSEE--TTCCG--S-SEEEEE-TT-EEEE-TT-EEEEEBB CS
     Cupin_4 101 ewrlddvmesfslvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvykptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvae 199
                 +wr+dd+m+sf        + pgg  gvgpH+D+yDVf++Q+ Gr+rWrv++ +vp+++++++++l ++++f+ ++d+ +epGD+LY+P+g++H+g+++
  EHU01163.1 105 DWRIDDLMISF--------SVPGG--GVGPHFDQYDVFIIQGTGRRRWRVGE-KVPMKQHCPHPDLLQVEPFDAIIDEEMEPGDILYIPPGFPHEGYSL 192
                 ***********........*****..*************************6.********************************************** PP

                 T-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHHHHHHHHHCS-HHHHCCHHHHHHHHS----TT CS
     Cupin_4 200 desltlSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellrdpalleeflgqlltsssrekdiaqslppiee 298
                 +++l++Svg+rap+ +el++ ++d++l +  +   r++d++ ++++ +  i  +++++l++ + +++++pa++e++lg+++++s++e d+a+ +pp++ 
  EHU01163.1 193 ENALNYSVGFRAPSGRELISGFADYALANELGS-LRYTDPDVPSRDCPSLILPEEVEGLRKVMLDVVNQPAHFEQWLGEFISQSRHELDVAPPEPPYQP 290
                 ********************************8.***************************************************************** PP

                 CCTCCCCTT-ECEESSTTSEE CS
     Cupin_4 299 deledllaedgaelsrlsslr 319
                 de++d+l ++g +lsrl+ lr
  EHU01163.1 291 DEIYDAL-QQGDVLSRLGGLR 310
                 *******.*******998765 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.039   1.2e+02       7      42 ..     118     151 ..     115     153 .. 0.78
   2 !   11.2   0.0   7.6e-05      0.23      39      56 ..     171     188 ..     166     195 .. 0.88
   3 ?   -3.3   0.0       2.7   7.9e+03      40      50 ..     311     321 ..     305     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.039
                 TTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEE CS
     Cupin_2   7 pGesapshrHpgedeffyVleGegelt.vdgeevele 42 
                 pG+  ++h  ++    +++++G+g+ +   ge+v+++
  EHU01163.1 118 PGGGVGPHFDQYD---VFIIQGTGRRRwRVGEKVPMK 151
                 8888889999999...888888887776667778876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.6e-05
                 EEEETTEEEEE-TT-EEE CS
     Cupin_2  39 veleaGdsvyfpagtpHr 56 
                  e+e+Gd++y+p+g pH+
  EHU01163.1 171 EEMEPGDILYIPPGFPHE 188
                 579**************7 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.7
                 EEETTEEEEE- CS
     Cupin_2  40 eleaGdsvyfp 50 
                 +l+ Gd++y++
  EHU01163.1 311 VLTLGDAIYIN 321
                 67779999986 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.1e-06     0.018      42     114 ..     118     202 ..     106     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.1e-06
                 TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS...................EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEE CS
     Cupin_1  42 pgglllPhyhpnateiayvlqGegrvgfvvpgng..................nrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfd 114
                 pgg + Ph+       ++++qG+gr      g++                     ++ ++++Gd++++P+g++h  y+   e+a+ ++v  
  EHU01163.1 118 PGGGVGPHFD---QYDVFIIQGTGR-RRWRVGEKvpmkqhcphpdllqvepfDAIIDEEMEPGDILYIPPGFPHEGYSL--ENALNYSVGF 202
                 7777777777...445778888887.333333334677788888899988855555556***************99998..6777777655 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55   1.6e+03     146     165 ..     124     143 ..     115     148 .. 0.89
   2 ?   11.7   0.0   5.2e-05      0.15     212     241 ..     169     197 ..     156     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.55
     Cupin_8 146 lHkDhyeNlycvvrGrKkft 165
                  H D y+ + ++  Gr++++
  EHU01163.1 124 PHFDQYDVFIIQGTGRRRWR 143
                 5****************986 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.2e-05
     Cupin_8 212 levtlnaGevLylPalWfHeVkslaeeplh 241
                 ++ ++++G++Ly+P ++ He +sl e+ l+
  EHU01163.1 169 IDEEMEPGDILYIPPGFPHEGYSL-ENALN 197
                 56689***************9988.44344 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3     9e-05      0.27      45      66 ..     173     194 ..     118     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9e-05
                   E-TT-EEEE-TTS-EEEEE-TT CS
  AraC_binding  45 lgpGdlfLlppgepHdyesdse 66 
                   ++pGd++ +ppg pH+++s ++
    EHU01163.1 173 MEPGDILYIPPGFPHEGYSLEN 194
                   68***************99885 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00031      0.93      85     114 .]     173     202 ..     150     202 .. 0.88
   2 ?   -0.6   0.0      0.57   1.7e+03      32      70 ..     237     274 ..     222     283 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00031
                 E-TT-EEEE-TT-EEEEEESSSEEEEEEEE CS
        JmjC  85 qkpgefVfvfpgayHsvfnlgfniaeavnf 114
                  +pg++++++pg +H + +l  +++ +v f
  EHU01163.1 173 MEPGDILYIPPGFPHEGYSLENALNYSVGF 202
                 68*******************999998866 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.57
                 EEEEEE-GGGHHHHHHHHHHHHHCCSTTG.CCTTTCEE-H CS
        JmjC  32 kvWyiipeekkeklekvlskknskeqpdl.lrhkstlisp 70 
                 +++ +i +e+ e l kv+ +    +qp++  +++  +is 
  EHU01163.1 237 DCPSLILPEEVEGLRKVMLDV--VNQPAHfEQWLGEFISQ 274
                 555666666677777777777..46777766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 3210.82
//
Query:       EHU01164.1  [L=490]
Description: sensory histidine kinase in two-compoent regulatory system with PhoP [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-85  284.3   0.3    5.6e-85  283.7   0.3    1.3  1  PhoQ_Sensor  PhoQ Sensor
    9.4e-14   51.9   0.0    1.6e-13   51.1   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    6.8e-07   29.1   0.0    1.5e-06   28.1   0.0    1.5  1  HATPase_c_5  GHKL domain
    5.7e-06   26.6   1.3      4e-05   23.9   0.2    2.3  2  HAMP         HAMP domain
    0.00078   19.4   1.2     0.0013   18.7   0.1    1.9  2  HisKA        His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.054   13.5   0.0       0.11   12.5   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain
      0.085   12.7   0.0       0.16   11.8   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> PhoQ_Sensor  PhoQ Sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.7   0.3   2.2e-88   5.6e-85       1     178 [.      10     190 ..      10     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.7 bits;  conditional E-value: 2.2e-88
  PhoQ_Sensor   1 plslrvrfllataavvlalslsyGlvavvGylvsfdkttyrllrgesnlfyslaqwedgkltievPenldlnsptlvliydekgkllWrqrevpelek 98 
                  p+slr+rflla+aa+vl+lslsyG+vav+Gy+vsfdk+tyr++rgesnlf++laqw+d+klti++Pe+  ln+ptlv+iyde+gkllW+qr+vpe+++
   EHU01164.1  10 PISLRTRFLLASAAIVLILSLSYGMVAVIGYVVSFDKNTYRVMRGESNLFFTLAQWKDNKLTIAQPERTMLNFPTLVFIYDEHGKLLWQQRDVPEIRE 107
                  89************************************************************************************************ PP

  PhoQ_Sensor  99 kikkeWlkkeglyeldtdvktssallknnpeaqkklkkld...ddedeelthsvavnryaateklPaltivvvdtiPqelqks 178
                  ki++eWl k+++ye+dt+++ts+a +++n +aq++l++ d   dd+++++thsvavnry+at++lPaltivvvdtiPqelq+s
   EHU01164.1 108 KIQPEWLLKPDFYEIDTNNSTSRAAMGDNLTAQQQLHAWDdndDDDQDTFTHSVAVNRYDATTNLPALTIVVVDTIPQELQHS 190
                  ************************************9998665677899********************************98 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   6.4e-17   1.6e-13       1     109 [.     378     481 ..     378     484 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 6.4e-17
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 gd+  +++++ n++dNa k+    + iev+ +++ed l+i + D+G+Gip+++++++f + ++    ++   g GlGl++v+ + e++ G++  +s+p 
  EHU01164.1 378 GDQNDFMEVMGNVLDNACKY--CLEFIEVSAHQTEDALHIYIDDDGPGIPESKRDLIFVRGQR---VDTMRPGQGLGLAVVRDILEQYAGNVIASSSPL 471
                 79999**************9..45778999997779**********************86666...445679***********9999***********9 PP

                 TEEEEEEEEE CS
   HATPase_c 100 rGttftftlp 109
                 +G ++ + ++
  EHU01164.1 472 GGARMEVVFQ 481
                 9998877655 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   5.8e-10   1.5e-06       3      86 ..     380     465 ..     379     470 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 5.8e-10
  HATPase_c_5   3 dldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...ek.....kklesskskkeehGiGlksireivkkykgnls 86 
                  ++d++ ++gn+LdNA   c +      fI++++++++++l i i+    g   +k      + +   + +  +G+Gl  +r i+++y gn+ 
   EHU01164.1 380 QNDFMEVMGNVLDNACKYCLE------FIEVSAHQTEDALHIYIDDDGPGipeSKrdlifVRGQRVDTMRPGQGLGLAVVRDILEQYAGNVI 465
                  78************9887765......99*****************97775543323333223355677899*****************986 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   1.5e-08     4e-05       2      52 ..     215     264 ..     214     265 .. 0.87
   2 ?    1.2   0.0       0.2     5e+02       2      25 ..     277     301 ..     277     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
                 HHHTTHHHHHHHHHHHHHHTTT...BTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaG...dldtrlpvsgrDEiGeLarafNaMldrLr 52 
                  a++ lrP+  L+ ++r++  G   +    l+++++ E++ L+r++N +l++ r
  EHU01164.1 215 AAHWSLRPIGHLTLQVRELETGqreN----LDDKPPQELRSLVRNLNLLLTNER 264
                 799******************95554....555699*************99876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.2
                 HHHTTHHHHHHHHHHHHHHTTT.BT CS
        HAMP   2 larrilrPLrrLaraarriaaG.dl 25 
                 l++++  PL  L ++ r+++ G +l
  EHU01164.1 277 LTHSLKTPLAVLQSTLRSLRGGkEL 301
                 678999*************998655 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         3   7.7e+03      35      56 ..     247     254 ..     225     263 .. 0.51
   2 !   18.7   0.1   5.1e-07    0.0013       5      65 ..     273     331 ..     270     333 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
                 SSCHHHHHHHHHHHHHHHHHHH CS
       HisKA  35 eelkeyletiesearrldhlve 56 
                 +e              l++lv 
  EHU01164.1 247 QE--------------LRSLVR 254
                 22..............333333 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 5.1e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   5 flagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                  la++ H L+tPL++++ ++  L+  ++lt e++e   ++ +++ r++++v   L  ++++
  EHU01164.1 273 TLADLTHSLKTPLAVLQSTLRSLRGGKELTIEQAE--PVMLEQISRISQQVGYYLHRASMQ 331
                 69*********************776678888888..777777777777777766666665 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05      0.11      38     109 ..     385     457 ..     383     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
  HATPase_c_2  38 EactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep..keslkegGrGlalikglv 109
                  E++ N+   a++ +  + +ev++ ++e+al++ + D+Gpg + ++++   + ++  ++ ++ +G+Gla+++ + 
   EHU01164.1 385 EVMGNVLDNACKYCL-EFIEVSAHQTEDALHIYIDDDGPGIPESKRDLIFVRGQrvDTMRPGQGLGLAVVRDIL 457
                  888899999999999.99**********************8888777776666667888999999999999876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.4e-05      0.16       9      49 ..     389     428 ..     382     447 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
  HATPase_c_3   9 elvdNsldAdaenvkievnknrgktgeivieDdGkGmseee 49 
                   ++dN+     e +++++++ + ++  i i DdG G++e++
   EHU01164.1 389 NVLDNACKYCLEFIEVSAHQTE-DALHIYIDDDGPGIPESK 428
                  5789999999999*******86.89************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3560.83
//
Query:       EHU01165.1  [L=222]
Description: DNA-binding response regulator in two-component regulatory system with PhoQ [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-24   84.3   0.0    9.9e-24   83.7   0.0    1.3  1  Response_reg  Response regulator receiver domain
    8.1e-20   70.7   0.1    1.7e-19   69.6   0.1    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0052   17.1   0.0     0.0088   16.4   0.0    1.4  1  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   1.7e-27   9.9e-24       1     111 [.       3     112 ..       3     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 1.7e-27
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+D+ l+r+ l+ +l+e g  +v++aed+kea   l+e+ +d+ l+D+ +pg dG+ l+++ r++    p+++lta++  + +veal+agadd+
    EHU01165.1   3 VLVVEDNALLRHHLSVQLREMGH-QVDAAEDAKEADYFLQEHLPDIALVDLGLPGEDGMSLIRRWRNDAVRQPILVLTAREGWQAKVEALEAGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf++ee+ ++l
    EHU01165.1  99 VTKPFHIEEVAARL 112
                   *********99887 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1   2.9e-23   1.7e-19       2      77 .]     146     220 ..     145     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.9e-23
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                   +v+lt+ e+ + e+L++n+g+vvs++ L+ +++++ e  +++t+dv + rLRkk+ +  +++++I tvrg+GYr+
   EHU01165.1 146 SPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKILA-LHSDEVIATVRGQGYRF 220
                  589*******************************************************.55677**********97 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.5e-06    0.0088       1      78 [.       2      81 ..       2      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.5e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleess.sealavilgsvs.sleealealaekdphlPvlllges 78
                ++Lv++d+a  r++l++ L+ +g++v a ++++ +++  +++  ++ +v lg       +++++  +++  +P+l+l+ +
  EHU01165.1  2 RVLVVEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLQEHlPDIALVDLGLPGeDGMSLIRRWRNDAVRQPILVLTAR 81
                69***************************999885554444404445555544445678889999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1633.79
//
Query:       EHU01166.1  [L=456]
Description: adenylosuccinate lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-77  261.5   0.0    1.4e-77  261.2   0.0    1.1  1  Lyase_1   Lyase
    3.2e-52  175.5   0.0      1e-51  173.9   0.0    1.9  1  ASL_C     Adenylosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.2   0.0   1.5e-81   1.4e-77       1     305 [.      14     312 ..      14     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 261.2 bits;  conditional E-value: 1.5e-81
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTT... CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellg... 96 
                 gr+ +k+++l++if+e ++++fr+++ ++++l++l++ a++++v++  + a++ + lde+++ +++ d++++k+i+++++++v++ ++++++e+++   
  EHU01166.1  14 GRYGDKVSPLRAIFSEFGLLKFRVEV-EVRWLQKLAATAEIKEVPA--FDADANAFLDEIVARFSEADAARIKTIERTTNHDVKA-VEYFLKEKVAdvp 108
                 89***********************5.555***************9..999**********************************.*********9999 PP

                 HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTC CS
     Lyase_1  97 ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllv 195
                  ++++++++h++++s+D+++++++l+l +a+++++lp+++qLi a+k  a+e++d+++++rTh+q+AtP+t+g+  +++++a++++r+ l++l + +++
  EHU01166.1 109 ALHAVSEFIHFACTSEDINNLSHALMLETARRDVILPYWQQLIAAVKGLAQEYRDIPLLSRTHGQPATPSTMGK--EMANVAYRMERQ-LRQLSQIEVL 204
                 99************************************************************************..777788888887.88888888** PP

                 EETTTTTTTSSTTTSCCTHHHHHHHHHH..HHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTS CS
     Lyase_1 196 ellgggtavgtglnadpefaelvakela..kvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiM 291
                 ++++g++++++++ a+++  e+ +++l+  +vt+l+ +++p+++ +++++D+++el++++++++t L++f++D++++ +  ++++++++ ++e+GSS+M
  EHU01166.1 205 GKINGAVGNYNAHIAAYP--EADWHQLSeeFVTSLGiTWNPYTT-QIEPHDYIAELFDCIARFNTILIDFDRDIWGYVA--LNHFKQKTVAGEIGSSTM 298
                 *****************9..9*******999*****99999998.**********************************..****************** PP

                 TTTEBTHHHHHHHH CS
     Lyase_1 292 PgKvNPvqlElltg 305
                 P+KvNP+++E+  g
  EHU01166.1 299 PHKVNPIDFENSEG 312
                 **********9655 PP

>> ASL_C  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.0   1.1e-55     1e-51       1     115 []     331     445 ..     331     445 .. 0.99

  Alignments for each domain:
  == domain 1  score: 173.9 bits;  conditional E-value: 1.1e-55
                 -STT--TCHHHHHTTCHHHHHHHHHHHHHHHHHHCCEEE-HHHHHHHHHT-GGGGHHHHHHHHHHTT-TTHHHHHHHHHTTS---HHHHHHHHHCS-S- CS
       ASL_C   1 SrlQRDLtdStvlRnlgvalahslialksllkglsklevneealaedLdenwevlaEaiqtvlrregiekpYeklkeltrgkkitkeslkefieslevs 99 
                 Sr+QRDLtdStvlRnlgv+++++lia++++lkg+sklevn+e+l ++Ld+nwevlaE+iqtv+rr+giekpYeklkeltrgk+++++ +++fi+sl+++
  EHU01166.1 331 SRWQRDLTDSTVLRNLGVGVGYALIAYQATLKGISKLEVNRERLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAAGMQAFIDSLALP 429
                 9************************************************************************************************** PP

                 HHHHHHHHC--CCC-- CS
       ASL_C 100 eeakeeLkaltpatYi 115
                 ee+k++Lk++tpa+Y+
  EHU01166.1 430 EEEKTRLKQMTPANYL 445
                 ***************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3468.79
//
Query:       EHU01167.1  [L=213]
Description: putative lysogenization regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-72  243.1   3.5    2.6e-72  242.9   3.5    1.0  1  DUF489          Protein of unknown function (DUF489)
  ------ inclusion threshold ------
      0.088   12.9   2.5       0.29   11.2   2.5    1.8  1  TolA_bind_tri   TolA binding protein trimerisation
       0.13   12.1   0.1        1.9    8.5   0.0    2.4  2  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.9   3.5   4.3e-76   2.6e-72       1     191 [.       7     199 ..       7     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 242.9 bits;  conditional E-value: 4.3e-76
                 HHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHH--S-SSHHHHTTS.GGGGHHHHHHHHHHHHT--S.CHHHHHHHHHHHHHHHHHHHHHSTTH CS
      DUF489   1 drtlALagvlqaaklvqqlArtGqadeealetllkslletdpestedvygg.lanlklGletlleqlekekk.kkdaeltryalsllalerkLsknkea 97 
                 d+t ALag++qaa+lvqqlA++ +++ eal+++l+s+l+++p st++v+g+ +anl+lGletl+++l+++++  + aeltry+lsl+ lerkL+ nk+a
  EHU01167.1   7 DITFALAGICQAAHLVQQLANQAHCQPEALTVSLRSVLDLNPPSTLAVFGNnEANLRLGLETLMAVLNSTQRqGAGAELTRYTLSLMVLERKLNANKQA 105
                 6899***********************************************9*****************99945788********************** PP

                 HHHHHHHHHTTHHHHTTS-TTSHHHHHHHHHHHHHHTGGGSS-----S-CCHHC-HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH CS
      DUF489  98 laklgerieqierqlehfdllhenvlanlasiYsdtiSklgpriqvkGepevLqqeevqnkiRalLLagiRaavLWrqvGGsrwqllfsrkkll 191
                 +++l++ri+q++rql+h+ l ++++l+++a+iY+d+iS+lgpriqv+G+p+vLq++  q+k+Ra+LLagiRaavLW+qvGG r+ql+fsr++ll
  EHU01167.1 106 MNTLAQRISQLDRQLAHYALESDTILSAMAGIYVDVISPLGPRIQVTGSPAVLQNSLLQSKVRATLLAGIRAAVLWQQVGGGRLQLMFSRQRLL 199
                 *******************************************************************************************997 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.5   4.9e-05      0.29       6      35 ..      92     121 ..      90     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.9e-05
  TolA_bind_tri   6 varLErilearsqlllelqqqlealqqelr 35 
                    +  LEr+l+a++q++  l q++++l ++l+
     EHU01167.1  92 LMVLERKLNANKQAMNTLAQRISQLDRQLA 121
                    567***********************9986 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.087   5.2e+02      13      19 ..      95     101 ..      94     103 .. 0.90
   2 ?    8.5   0.0   0.00032       1.9       3      18 ..     106     121 ..     104     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.087
  Pox_A_type_inc  13 LErqLse 19 
                     LEr+L++
      EHU01167.1  95 LERKLNA 101
                     9****95 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00032
  Pox_A_type_inc   3 msrlRsRIsDLErqLs 18 
                     m+ l  RIs L+rqL+
      EHU01167.1 106 MNTLAQRISQLDRQLA 121
                     777889*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1554.09
//
Query:       EHU01168.1  [L=370]
Description: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     2e-142  474.2   0.0   2.3e-142  474.0   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase
    5.9e-09   35.4   0.0    1.7e-07   30.6   0.0    2.2  2  NAD_synthase   NAD synthase
    1.1e-06   28.6   0.0    1.4e-06   28.2   0.0    1.1  1  Asn_synthase   Asparagine synthase
    4.4e-06   26.4   0.0    6.8e-06   25.8   0.0    1.3  1  ThiI           Thiamine biosynthesis protein (ThiI)
    0.00043   19.9   0.0     0.0012   18.4   0.0    1.8  1  QueC           Queuosine biosynthesis protein QueC
  ------ inclusion threshold ------
       0.14   11.9   0.1       0.32   10.7   0.1    1.7  1  ATP_bind_3     PP-loop family


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.0   0.0  7.6e-146  2.3e-142       1     356 []       7     361 ..       7     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 474.0 bits;  conditional E-value: 7.6e-146
  tRNA_Me_trans   1 kkvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPnPdv 96 
                    kkv+v++SgGVDSsv+a ll++qgy+v+g+f+k+wee+d e+  c+a +dl+da++v++klgi+l++v+f+ ey+++vfe+fleey++GrTPnPd+
     EHU01168.1   7 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE-YCTAADDLADAQAVCDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDI 101
                    69***********************************88888.***************************************************** PP

  tRNA_Me_trans  97 lCNkeiKfgallekakeelgadalatGHYarvsleeeknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeaglavaekkd 192
                    lCNkeiKf+a+le a e+lgad +atGHY+r++    +++++llr+ d +kDQsyfL++ls++++++ lfP+gel+K+evr+iA++ +l +a+kkd
     EHU01168.1 102 LCNKEIKFKAFLEFAAEDLGADFIATGHYVRRQDI--DGRSHLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELEKPEVRRIAEQLELVTAKKKD 195
                    *********************************88..79********************************************************* PP

  tRNA_Me_trans 193 SqgiCfigkrkfkdflkkyleekeGkiieietgevlGeheGllsyTiGqrkGlkiag....aeeplyVvekdakkntvlvgkgedeealaskklrv 284
                    S+giCfig+rkf++fl++yl++++G+i +++ g+++Geh+Gl+++T+GqrkGl+i+g    +++p+yVv+kd+ +n+++v++g d+++l+s  l++
     EHU01168.1 196 STGICFIGERKFTEFLARYLPAQPGEIETVD-GQIVGEHQGLMYHTLGQRKGLGIGGlkesKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIA 290
                    *******************************.************************99888899******************************** PP

  tRNA_Me_trans 285 kelnwlaeelkekealelevkvrhkqelvkakvelkedetvevkldekvravtpGQaavlYkgdevLGggii 356
                    ++l+w+ ++ + ++ l+++vk+r++q+++++++  + ++++ev++de+v avtpGQ+av+Y ++++LGggii
     EHU01168.1 291 QQLHWVDRQ-PLTSPLRCTVKTRYRQTDIPCEIIPHGEDKIEVRFDEPVAAVTPGQSAVFYLDEVCLGGGII 361
                    *******55.55569*******************************************************98 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   5.8e-11   1.7e-07      17      83 ..       5      77 ..       1     101 [. 0.76
   2 ?    2.5   0.0     0.022        67     128     167 ..     148     187 ..     136     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.8e-11
                  TTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSS........TTHHHHHHHHHHHHHHTSEEEE---HH CS
  NAD_synthase 17 gakgvvlGlSGGvDSslvaalavkalgkenvlalllPssv........sseedvedalalaenlgievktidikp 83
                    k+v++G+SGGvDSs+ a l ++     +v +l + +          +  +d+ da+a++++lgi+ ++++ + 
    EHU01168.1  5 CQKKVIVGMSGGVDSSVSAWLLQQQG--YQVEGLFMKNWEeddgeeycTAADDLADAQAVCDKLGIKLHKVNFAA 77
                  569******************99976..89******7433111111114568999***************99764 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.022
                   -BHHHHTTT-S-TTTTT--SBETTTTS-HHHHHHHHHHTT CS
  NAD_synthase 128 gnksElvvGyfTkyGDgaadlapiaellKtevkeLakeln 167
                   gnk   +  y+  +  +a  l p++el K ev+++a++l 
    EHU01168.1 148 GNKDQSYFLYTLSHQQIAQSLFPVGELEKPEVRRIAEQLE 187
                   466666777888899999*****************99986 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.7e-10   1.4e-06      21     197 ..      10     197 ..       4     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.7e-10
  Asn_synthase  21 GalLSGGlDSSliaalaarqsksplktFsigf.....ee..kgsdeakyakevaehlgtehtelvlteeelldalpdviyhleepfadrsaiplyll 110
                    + +SGG+DSS+ a l+++q  +    F   +     ee   + d+++ a++v+++lg++ +++ + +e   +++++ +   ee  a+r   p  l+
    EHU01168.1  10 IVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWeeddgEEycTAADDLADAQAVCDKLGIKLHKVNFAAEYWDNVFEHFL---EEYKAGRTPNPDILC 103
                   5568***************998666678888865554338999******************9*9999975544455444...568899********* PP

  Asn_synthase 111 srlak.rkgvkvvLsGeGaDElfgGYpyfykaalsrsrefeklp.......larslrasllarklrklaellelaeardleelaelyrlkasdsa 197
                    +++k + ++  +    GaD +  G+  + ++   rs+  + l+       + + l+++++a+ l   +el +   +r +e+ +el+++k++ds 
    EHU01168.1 104 NKEIKfKAFLEFAAEDLGADFIATGHYVRRQDIDGRSHLLRGLDgnkdqsyFLYTLSHQQIAQSLFPVGELEKPEVRRIAEQ-LELVTAKKKDST 197
                   ****889999***************999***9999999999999*******9999999999999999999999777777755.666666666654 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.3e-09   6.8e-06       3      86 ..       6      90 ..       4     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.3e-09
        ThiI  3 qgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknep.gtseeaiekveklaellaeyqtslevklvvvdfk.evlkeilekvkek 86
                q kv++ +SgG+DS V+a+ll + G +v+ +++kn     +ee      +la+  a  +  l +kl  v+f  e+ +++ e+  e+
  EHU01168.1  6 QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEeDDGEEYCTAADDLADAQAVCDK-LGIKLHKVNFAaEYWDNVFEHFLEE 90
                8899*****************************985414556666777777777777774.7788888888524555666665554 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     4e-07    0.0012       1      63 [.       8      72 ..       8     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4e-07
                EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T.TSHH.HHHHHHHHHHT--.-EEEEE-GG CS
        QueC  1 kavvllSGGlDSttvlalakkegkevealtfdYgqr.hkke.leaakkiakelgveehkildldl 63
                k++v +SGG+DS++ ++l +++g++ve l ++  +    +e   aa+++a+++ v ++  ++l+ 
  EHU01168.1  8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEdDGEEyCTAADDLADAQAVCDKLGIKLHK 72
                68999**********************99886555423333245677788877775555555443 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00011      0.32       1      67 [.       8      76 ..       8     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                EEEEE--SCHHHHHHHHHHHHHCTTTTT.EEEEEEEE-SSS.TCHHHHHHHHHHHHHHTT-EEEEEE-- CS
  ATP_bind_3  1 kvlvAvSgGlDSmaLllllaklkkklgi.klvaihvdhglr.eeskeeaelvkelckklnikleiekvd 67
                kv+v++SgG+DS +  +ll+++  + +   +     d g    +++++ +  +++c+kl+ikl+  ++ 
  EHU01168.1  8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGlFMKNWEEDDGEEyCTAADDLADAQAVCDKLGIKLHKVNFA 76
                589***********9999999866544322233333344443467777777788888888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2721.06
//
Query:       EHU01169.1  [L=219]
Description: 23S rRNA pseudouridine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-13   49.7   1.1    3.3e-11   43.5   0.0    2.9  2  PseudoU_synth_2  RNA pseudouridylate synthase
  ------ inclusion threshold ------
       0.63   10.6   3.9         39    4.8   0.0    3.2  3  DUF5350          Family of unknown function (DUF5350)


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.6     0.096   8.6e+02      22      46 ..       6      30 ..       3      31 .. 0.86
   2 !   43.5   0.0   3.7e-15   3.3e-11       5     160 .]      44     186 ..      40     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.096
  PseudoU_synth_2 22 ekekettatssraeeekkelklvhR 46
                     ++ ++t  ts ++++ +++ ++vhR
       EHU01169.1  6 KRMRKTNQTSHPNKRFSRQTRPVHR 30
                     56788999999999**********9 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.7e-15
  PseudoU_synth_2   5 vnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegaikkk 98 
                      +nKP +v  q ++        e  +   ++  ++  +++ +RLD++++Gl++l++++ + ++l++  + +++ K Y++ v+gapee+  +   +
       EHU01169.1  44 FNKPFDVLPQFTD--------EAGRRTLKDFIDVSDVYAAGRLDRDSEGLMVLTNDGPLQAALTQ--PGKRTGKIYYVQVEGAPEETDLQPLRD 127
                      5566666555555........4444445555567889****************************..*************99998887655444 PP

  PseudoU_synth_2  99 iskdtekqegarrkaeeldgkkavtylkvlksgs..........seksakvslveleletGrkhQiRvhlaa 160
                       +               +dg    + ++++++            + k  ++++++++l +Gr++Q+R++ a+
       EHU01169.1 128 GVN-------------LKDGPTLPAGVEKVAEPDwlwprqppirERKAIPTQWLKITLFEGRNRQVRRMTAH 186
                      444.............344444444444444444455555555577999********************986 PP

>> DUF5350  Family of unknown function (DUF5350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.8     0.098   8.8e+02      27      51 ..      10      34 ..       3      40 .. 0.70
   2 ?    3.4   0.0     0.012   1.1e+02       3      34 ..     104     135 ..     102     136 .. 0.86
   3 ?    4.8   0.0    0.0043        39       7      28 ..     165     186 ..     162     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.098
     DUF5350 27 gekkkpGPnQrfkssgkkrrikrrs 51
                ++ ++  Pn rf+ +++   +k+ s
  EHU01169.1 10 KTNQTSHPNKRFSRQTRPVHRKASS 34
                55566779****9998766666555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.012
     DUF5350   3 KTGsveWvkvKgrkgqirlVpkkegekkkpGP 34 
                  TG +  v+v g  +++ l p ++g   k GP
  EHU01169.1 104 RTGKIYYVQVEGAPEETDLQPLRDGVNLKDGP 135
                 4************9999998888888888888 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0043
     DUF5350   7 veWvkvKgrkgqirlVpkkege 28 
                 ++W k+   +g+ r+V++  ++
  EHU01169.1 165 TQWLKITLFEGRNRQVRRMTAH 186
                 89**************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1741.64
//
Query:       EHU01170.1  [L=416]
Description: NADP-specific isocitrate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-117  390.7   0.0     7e-117  390.5   0.0    1.0  1  Iso_dh           Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.24   11.4   0.0    1.5  1  tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.5   0.0  7.8e-121    7e-117       2     348 .]      29     412 ..      28     412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 390.5 bits;  conditional E-value: 7.8e-121
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT...-EEEEEE---THHHHHHHS..SSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHHHHHHHHHHTTEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekag...lelefeevdvGgaaidetg..eplpeetleaikeadvvllgavgtpkekevrpengLlaLrkeldlf 95 
                 i+ +egdgiG +v++++lkv++aa++ka+   ++++++e++ G+++++ +g   +lp+etl+ ike++v+++g+++tp+++++r+ n  +aLr+eldl+
  EHU01170.1  29 IPYIEGDGIGVDVSPVMLKVVDAAVKKAYngeRKISWMEIYTGEKSVELYGqdVWLPQETLDLIKEYRVAIKGPLTTPVGGGIRSLN--VALRQELDLY 125
                 889************************999999***************9986689********************************..********** PP

                 EEEEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEET.................TG..GGGEEEEEEEEEHHHHHHHHHHHHHHHHHT CS
      Iso_dh  96 anlrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkg.................si.fteevavdtklyseeeieriaraafelAlkr 176
                 ++lrpv+++  ++ +sp+kr  +e++d+vi+Re+ ++iY+g+e ++ +                 +i f+e++++++k+ see+++r++raa+e+ +++
  EHU01170.1 126 VCLRPVRYY--TGTPSPVKR--PEDTDMVIFRENSEDIYAGIEWKAGTpeadkvikflreemgvkKIrFPENCGIGVKPCSEEGTKRLVRAAVEYTITN 220
                 *********..9*******9..9**********************9999***************97789****************************** PP

                 TTSEEEEEESTTTTHHHH.HHHHHHHHHHCC...................TTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTS CS
      Iso_dh 177 gkkkvtlvdKanvlksse.lwrkiveevaee...................eypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGs 255
                 +++++tlv+K+n++k++e  ++++ ++++++                   + ++i+++++++D++++q++ +p+++dVi+++Nl+GD++SD++aa+vG+
  EHU01170.1 221 NRDSLTLVHKGNIMKFTEgSFKDWGYQLVKDefggelidggpwmkfknpnTGKEIIVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGG 319
                 *************************************************99************************************************ PP

                 GCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTS..TCCCHHHHHHHHH CS
      Iso_dh 256 lGllpSaslgekkvaifEavHGsapdiagkdkaNpiavilSaalmLryslgleeaAdkiekAvekvleagivTkDlagea..akevstsefgdav 348
                 +G++p+a++g ++ a+fEa+HG+ap++ag+dk+Np +vilSa++mLr+ +++ eaAd i k++e++++a++vT+D+++ +  ak +++sefgda+
  EHU01170.1 320 IGIAPGANIG-DECALFEATHGTAPKYAGQDKVNPGSVILSAEMMLRH-MEWFEAADLIVKGMEGAINAKTVTYDFERLMegAKLLKCSEFGDAI 412
                 **********.79***********************************.*******************************999**********97 PP

>> tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05      0.24      86     135 ..     173     225 ..     168     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
  tRNA_synt_1c_R1  86 daAlkYlskkkeeeideaefekacGVGvevtpeq.....ieeaVekyieenkeei 135
                      d+ +k+l   +e  +++  f ++cG+Gv+   e+     +++aVe +i++n++ +
       EHU01170.1 173 DKVIKFL--REEMGVKKIRFPENCGIGVKPCSEEgtkrlVRAAVEYTITNNRDSL 225
                      5678999..445579*************865444333337778888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3191.72
//
Query:       EHU01171.1  [L=377]
Description: phage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-33  113.2   0.1    8.4e-33  112.4   0.1    1.5  1  Arm-DNA-bind_1   Bacteriophage lambda integrase, Arm DNA-bind
    9.2e-20   71.1   1.0    1.2e-19   70.8   0.2    1.6  2  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
      0.067   13.6   0.0       0.19   12.1   0.0    1.8  1  Arm-DNA-bind_3   Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_1  Bacteriophage lambda integrase, Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.1   1.4e-36   8.4e-33       1      73 [.       1      72 [.       1      73 [. 0.98

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.4e-36
                    XXSSTXSSGGGS-TTEEEE.....TTSEEEEE-TTTS-EEEEESSHHHHHHHHHHHHHHHTSSS-SSSCCHHH CS
  Arm-DNA-bind_1  1 MaarprkknidlPpnLyakldkrngkvYyrYrhPvtgkfhsLGtdereAieeAveaNtrlaeqrkrqllseri 73
                    Maarpr+++i++P nLy+kldkr+g+vY++Y+hPvtgkfhsLGtd +eA++ A eaN+ +aeqr+rq+ls ++
      EHU01171.1  1 MAARPRTHKITIP-NLYSKLDKRTGRVYWQYKHPVTGKFHSLGTDAEEARQVASEANDIIAEQRTRQILSVNE 72
                    9************.*******************************************************9987 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       0.8   4.8e+03      49      84 ..     100     134 ..      91     172 .. 0.49
   2 !   70.8   0.2     2e-23   1.2e-19       2     168 ..     195     366 ..     194     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.8
                      ECTTTEEEEEEEECSSSSEEEEECT.HHHHHHHHHHH CS
  Phage_integrase  49 dlengvilvheregKgskeravpls.eealellkell 84 
                      +le g i++  +  K++k+ +  l  ++ + +lk++ 
       EHU01171.1 100 RLETGDIKL--NSVKQKKKPVELLRqHSGMMYLKDIT 134
                      555555666..55555555444444333344444433 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 2e-23
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECT...HHHHHHHHHHHHHHCHCCT CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravpls...eealellkellskaleeae 92 
                      +l  +e ++++aa+e  ++ + ++++ l++ tG+Ri+++ +++ +d+   +  ++v  ++ K++ ++a+pls   e++   l+e+++k+ + a 
       EHU01171.1 195 RLSLEEWKEIYAAAEH-HPPYLQCAMLLAVVTGQRIGDISRMKFSDI--WDDMLHV--EHEKTGAKVALPLSlrcEALNITLREVVAKC-RDAV 282
                      688899**********.******************************..6778899..899****************************.6666 PP

                      TTSBSSBET.......TSSB--HHHHHHHHHHHHHHCT-S....SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHC CS
  Phage_integrase  93 ksellfask.......rgkplsrqtvrkafkraveeagie....kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYth 168
                       s++l   +       rg+++s++++ ++fk+a++++gi     k++t+H+ R s++ +L+ea+  ++  qkllGH+s + t  Y +
       EHU01171.1 283 VSKYLVHFRhstsqatRGDRVSANSITTTFKKARNRTGILwpdrKAPTFHEQR-SLSERLYEAQ-GID-TQKLLGHKSPQQTAKYHD 366
                      666666555699***************************9*************.********97.444.49*************975 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.1e-05      0.19      20      63 ..      14      61 ..       2      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  Arm-DNA-bind_3 20 GLglrvtps.Gaktfvlryrl.Grypav..slaeARkkarelraliaq 63
                     L+ +  ++ G+ +++++  + G++ ++    +eAR+ a e+ + ia+
      EHU01171.1 14 NLYSKLDKRtGRVYWQYKHPVtGKFHSLgtDAEEARQVASEANDIIAE 61
                    6677776667*****9995557**9887779***********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2804.63
//
Query:       EHU01172.1  [L=38]
Description: hypothetical protein CKS_4271 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 297.51
//
Query:       EHU01173.1  [L=546]
Description: putative DNA modification methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   80.9   0.0    1.6e-22   80.4   0.0    1.2  1  DUF4942   Domain of unknown function (DUF4942)
    4.5e-05   23.1   0.0    8.2e-05   22.2   0.0    1.3  1  MTS       Methyltransferase small domain


Domain annotation for each model (and alignments):
>> DUF4942  Domain of unknown function (DUF4942)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   1.8e-26   1.6e-22       2     199 .]      84     265 ..      83     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 1.8e-26
     DUF4942   2 kelkksaWrsllkklglrkfltaaarkevekqleeqakpefsveNIyatfeelvknrkeifergvvevFdklsnraqvegyktNekykvgkriIlsgl. 99 
                 ++l+  +W++ l+ +++ +++  ++r+e+++q++e ++p+f++e ++ t+ el+++r++ f + v  +F++ls      ++ tN +  +gkr+Il ++ 
  EHU01173.1  84 ASLNATFWQKALNMTDVYEYMPNNRRTEWNEQIREMKTPDFEEETVRPTIMELLNSRQKFFSERVDGIFRALS-----GDHVTNRPEGFGKRMILARVf 177
                 68999********************************************************************.....*******************99 PP

     DUF4942 100 sksgwegeielsydaenklddlervlalldGktinderndeseqvakaaektlvsraeegqevendyfevrvfkkGtlHlkfkrsdlvaklNrivaehy 198
                 +++g+ +      d    ++dl +v+a + G+   ++r   ++ + ++a+     r  e  +++   ++vr++ kGt+Hl+   +d++ +lN i+a  y
  EHU01173.1 178 NDYGTTN-----HDMSGYIQDLRQVIAKFMGR--DEPRWRVTDDALQEAR----CRHGEWLVLDGGALRVRAYLKGTAHLEV-HPDMAWRLNCILAHLY 264
                 99**999.....788899**************..8888888888999988....3556666789999***************.*************988 PP

     DUF4942 199 g 199
                 +
  EHU01173.1 265 P 265
                 6 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.1e-09   8.2e-05      43     142 ..     424     509 ..     406     518 .. 0.62

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.1e-09
                 SHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STT..TTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEE CS
         MTS  43 GvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvl..eeveekkfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLliV 138
                 G l++ + + +     ++v+++          ++  +++   v + d +  +e++  +fd +v+NPPf +g+a      ++ +++A++  k+gG+L+ +
  EHU01173.1 424 GNLAVLMPADQ----TQCVEIS-------ALHCRVLEAKgYAVEQADFIqwAEATSSRFDKVVMNPPFSEGRA------KAHVESAASLVKPGGRLVAI 505
                 44444443322....2244443.......33333333332233333333113444589**************9......78899************988 PP

                 EETT CS
         MTS 139 anrk 142
                     
  EHU01173.1 506 LPGS 509
                 7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 4569.28
//
Query:       EHU01174.1  [L=160]
Description: hypothetical protein CKS_4273 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.047   13.1   0.0    1.1  1  Not3       Not1 N-terminal domain, CCR4-Not complex component
       0.08   12.9   0.0       0.15   12.0   0.0    1.4  1  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.3e-06     0.047     158     217 ..      64     123 ..      26     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-06
        Not3 158 kskekarveeleklierhkfhieklelllrlleneelepeevekikedieyyvesnqded 217
                 k+++k  v++++k  +r k+h +k e l  ++  ++ + e+++ +ke++++ ++  +++ 
  EHU01174.1  64 KERQKLYVQRCQKGADRSKYHYTKEEALQAFVYRKQYQLERIQLTKETLQMCLSGLREAG 123
                 34444599******************************************9998877765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05      0.15      30      58 ..     104     133 ..     103     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.7e-05
                 HTTSSHHHHHHHHHHHHHTTSEE.ET.EEEE CS
   HTH_Crp_2  30 mlGltretvsrilseLkreglis.rg.rrir 58 
                 ++ lt et+   ls L+++g+is  g r  +
  EHU01174.1 104 RIQLTKETLQMCLSGLREAGIISgEGvR-CK 133
                 6889*******************54544.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1326.87
//
Query:       EHU01175.1  [L=82]
Description: hypothetical protein CKS_4274 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00017   21.2   0.1    0.00078   19.1   0.0    2.1  2  Sigma70_r4_2  Sigma-70, region 4
     0.0029   17.1   0.0      0.012   15.2   0.0    2.0  2  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.024   14.7   0.0    1.6  2  HTH_7         Helix-turn-helix domain of resolvase
      0.059   13.1   1.4        2.4    8.0   0.1    2.6  2  HTH_38        Helix-turn-helix domain
       0.15   12.2   0.0        0.2   11.8   0.0    1.3  1  Sigma70_r3    Sigma-70 region 3


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.24   8.5e+02      31      45 ..       5      19 ..       1      26 [. 0.71
   2 !   19.1   0.0   2.2e-07   0.00078      24      48 ..      53      77 ..      46      82 .] 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.24
                  HHHHHHT--HHHHHH CS
  Sigma70_r4_2 31 EIAellgisegtVks 45
                   I +l+g s ++V+ 
    EHU01175.1  5 SIGRLIGRSGAAVRA 19
                  577888888777775 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.2e-07
                  TS---HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2 24 leglsykEIAellgisegtVksrls 48
                   eg s ++IAe+l+++ g+V+++++
    EHU01175.1 53 CEGVSRRDIAEKLEMPIGAVNQYIY 77
                  69*********************98 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.33   1.2e+03      19      39 ..       2      22 ..       1      25 [. 0.71
   2 !   15.2   0.0   3.3e-06     0.012      17      38 ..      55      76 ..      45      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.33
      HTH_24 19 sqreLAerlglSpstvnrrlk 39
                +   + + +g S ++v++  +
  EHU01175.1  2 TVGSIGRLIGRSGAAVRAKAR 22
                666788888999988887555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.3e-06
      HTH_24 17 risqreLAerlglSpstvnrrl 38
                + s r++Ae+l +++++vn+++
  EHU01175.1 55 GVSRRDIAEKLEMPIGAVNQYI 76
                7899****************98 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.3   8.1e+03      21      33 ..      14      26 ..      12      26 .. 0.67
   2 ?   14.7   0.0   6.8e-06     0.024       5      30 ..      39      64 ..      38      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
                T--STTTSSSS-- CS
       HTH_7 21 GisiskIAkevni 33
                G ++++ A+e++i
  EHU01175.1 14 GAAVRAKARELGI 26
                6666666888876 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.8e-06
                SS-HHHHGGGGSSTTTT--STTTSSS CS
       HTH_7  5 klskndinrvvkLleeGisiskIAke 30
                k+ + di+ +++L+ eG s+++IA+ 
  EHU01175.1 39 KYRQADIELARELHCEGVSRRDIAEK 64
                78999*******************86 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.013        45      21      33 ..       1      13 [.       1      18 [. 0.87
   2 ?    8.0   0.1   0.00068       2.4      11      30 ..      46      65 ..      40      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.013
      HTH_38 21 lslreIArrLgrs 33
                +++  I+r++grs
  EHU01175.1  1 MTVGSIGRLIGRS 13
                67888*******9 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00068
      HTH_38 11 eeIerllaeGlslreIArrL 30
                e    l++eG s r+IA +L
  EHU01175.1 46 ELARELHCEGVSRRDIAEKL 65
                566789***********988 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.5e-05       0.2       4      43 ..      38      78 ..      35      82 .] 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.5e-05
                HHHHHHHHHHHHHHSSX.XXHHHHHHHHTXXHHHHHHHHHH CS
  Sigma70_r3  4 nkikraqreLeqelgre.PtpeEiAeeLglseekVrevlea 43
                 k+++a  eL +el +e  +  +iAe+L++++  V +++  
  EHU01175.1 38 AKYRQADIELARELHCEgVSRRDIAEKLEMPIGAVNQYIYF 78
                5888999999999999856999*************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 631.87
//
Query:       EHU01176.1  [L=110]
Description: hypothetical protein CKS_4275 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 993.75
//
Query:       EHU01177.1  [L=82]
Description: hypothetical protein CKS_4276 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 685.42
//
Query:       EHU01178.1  [L=71]
Description: hypothetical protein CKS_4277 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00016   21.2   0.5    0.00023   20.7   0.5    1.2  1  FlbD      Flagellar and Swarming motility proteins


Domain annotation for each model (and alignments):
>> FlbD  Flagellar and Swarming motility proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.5   1.3e-08   0.00023       9      48 ..      26      65 ..      22      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.3e-08
        FlbD  9 geefvlNadlIetieetPDTvItLtnGkkyvVkEsvdevi 48
                ++++++ +++Ie+   +  T I + +G+ + VkE+ +e++
  EHU01178.1 26 HDPIYVVSEHIESFYYVGNTAIKMASGEVIKVKETPEEIV 65
                6789999*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 631.40
//
Query:       EHU01179.1  [L=64]
Description: hypothetical protein CKS_4278 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 531.72
//
Query:       EHU01180.1  [L=187]
Description: hypothetical protein CKS_4279 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-29  103.3   1.3    8.6e-29  100.6   1.5    1.8  2  Sipho_Gp157    Siphovirus Gp157
    0.00015   21.6   1.4    0.00021   21.2   1.4    1.1  1  ERM            Ezrin/radixin/moesin family
     0.0095   16.3   1.2       0.11   12.9   0.1    2.5  2  LPP            Lipoprotein leucine-zipper
  ------ inclusion threshold ------
      0.043   14.5   2.4       0.41   11.3   0.0    2.3  2  KfrA_N         Plasmid replication region DNA-binding N-term
      0.057   14.0   0.4        1.1    9.8   0.0    2.2  2  TipAS          TipAS antibiotic-recognition domain
      0.065   13.5   0.7       0.35   11.1   0.1    2.0  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
       0.11   12.7   0.4       0.11   12.7   0.4    1.8  2  Tropomyosin_1  Tropomyosin like
       0.11   12.7   0.1        0.6   10.4   0.0    1.9  2  PP-binding_2   Acyl-carrier
        0.6   10.4   3.6        3.6    7.9   0.3    2.4  2  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Sipho_Gp157  Siphovirus Gp157
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   1.5   4.3e-32   8.6e-29       5     145 ..       8     149 ..       6     161 .. 0.93
   2 ?    0.2   0.0      0.34   6.7e+02     148     163 .]     171     187 .]     169     187 .] 0.84

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 4.3e-32
  Sipho_Gp157   5 laeqykellelleeedvdeeeeeikdtLesleeeieeKaeniakviknleaeaeaikeeekrLaerkkslenkaenLKeyleeameaaglkkiktplf 102
                  la ++ +l +l+ e   d   e+i+dtLe++e+ +e+K + +++ +++ +++aea+k+e++r +erkk  e+++ +LK+yl+++++a++ +++kt+l+
   EHU01180.1   8 LALEISKLESLAVEG-GDLTPEMIADTLEGIEGMLEDKFDAVMAKVREFDTKAEACKKEAARVSERKKHWERQVYALKSYLLQCLQASNRTTFKTTLN 104
                  556677787777555.477889**************************************************************************** PP

  Sipho_Gp157 103 tlsirksppsveiedeekipkefik..ekvekkvdKkaikkalka 145
                  t++ rk   s++i++ + +p+ef++  ++v +++++ ++kkal++
   EHU01180.1 105 TFTARKGSVSLKIDNVDLLPDEFVEshTEVVTTPKNDELKKALQE 149
                  *************************99888899**********86 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.34
  Sipho_Gp157 148 eipgAeLe.egesLrIk 163
                  +ipgA+Le  +  L+++
   EHU01180.1 171 SIPGAHLEtGSPTLQVR 187
                  79******888888876 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.4     1e-07   0.00021      80     203 ..      41     159 ..      32     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1e-07
         ERM  80 lerklreaeleaarleeeserkeeeaerLkeeleeareaeeeakekllealstpskseseenveeseteeeeenseeesaeletdeveklsleieeeRv 178
                 le+k +++ ++++++  + e+ ++ea r  e+ ++ +++    k+ ll+ l++++++       + +t  ++ +  + s  l+ d+v+ l +e  e+++
  EHU01180.1  41 LEDKFDAVMAKVREFDTKAEACKKEAARVSERKKHWERQVYALKSYLLQCLQASNRT-------TFKTTLNTFTARKGSVSLKIDNVDLLPDEFVESHT 132
                 788999999999999999999999999999999999999999999999999999432.......22333444456678999999999999999999998 PP

         ERM 179 tyl..ekskrlqeqLkeLkseleqlkd 203
                 +++   k+ +l++ L+eL + +++++ 
  EHU01180.1 133 EVVttPKNDELKKALQELATKIAAARA 159
                 887446*******************97 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   5.4e-05      0.11      12      43 ..      41      72 ..      39      72 .. 0.94
   2 ?    1.3   0.1      0.23   4.6e+02       4      27 ..     142     158 ..     139     163 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
         LPP 12 LkskvdqlssdvnsakaaaqaakeEAaRANqR 43
                L++k+d++ ++v +  + a+a k+EAaR  +R
  EHU01180.1 41 LEDKFDAVMAKVREFDTKAEACKKEAARVSER 72
                99**************************8776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.23
         LPP   4 eLssqVsqLkskvdqlssdvnsak 27 
                 e       Lk+  ++l+ ++++a+
  EHU01180.1 142 E-------LKKALQELATKIAAAR 158
                 3.......4444444444444444 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.9     0.072   1.4e+02      73     101 ..      59      87 ..      15      96 .. 0.67
   2 ?   11.3   0.0   0.00021      0.41      28      98 ..      91     162 ..      86     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.072
      KfrA_N  73 qaaleeaeeelaaaraelqaaraaleaer 101
                 ++a+++  +++ +++++++++  al++ +
  EHU01180.1  59 AEACKKEAARVSERKKHWERQVYALKSYL 87 
                 34455555578888888888877777655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00021
      KfrA_N  28 lGgGspntisrvlkeweaelaaalaaraa.pelPealaeallaalwqaaleeaeeelaaaraelqaaraale 98 
                 l++ + +t +++l+++ a++++ + + +  + lP++++e  ++ + +   +e +++l+++ ++++aaraa e
  EHU01180.1  91 LQASNRTTFKTTLNTFTARKGSVSLKIDNvDLLPDEFVESHTEVVTTPKNDELKKALQELATKIAAARAAGE 162
                 566678999****************99999***********4444444444555566666666666665544 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.12   2.4e+02      22      60 ..      37      67 ..      26      98 .. 0.64
   2 ?    9.8   0.0   0.00055       1.1      22      68 ..     132     178 ..     126     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
                XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX CS
       TipAS 22 iaklskedweelkaelkelfaklaaalaagkdpdseeaq 60
                i+++ ++++++++a++ e+  k  a+ ++        a 
  EHU01180.1 37 IEGMLEDKFDAVMAKVREFDTKAEACKKE--------AA 67
                56666666666666666666666665433........22 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00055
                 XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
       TipAS  22 iaklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehra 68 
                 ++  ++ + +elk+ l+el  k+aaa aag++pd e  +++ + h +
  EHU01180.1 132 TEVVTTPKNDELKKALQELATKIAAARAAGEEPDPELLKSIPGAHLE 178
                 55667778899***********************9999998888876 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00017      0.35      83     138 ..      30      85 ..      15     107 .. 0.87
   2 ?    0.8   0.1      0.26   5.2e+02      50      78 ..     138     166 ..     123     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
  Jnk-SapK_ap_N  83 iedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklhe 138
                    i d++e+ +  l++k+  +  ++re+++ka++++++++r++e+++ ++++  +l++
     EHU01180.1  30 IADTLEGIEGMLEDKFDAVMAKVREFDTKAEACKKEAARVSERKKHWERQVYALKS 85 
                    6788888899999**********************************999887766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.26
  Jnk-SapK_ap_N  50 aeleelreeleqLeteyerekelrkraee 78 
                     + +el+++l++L t+    +++ ++ + 
     EHU01180.1 138 PKNDELKKALQELATKIAAARAAGEEPDP 166
                    45788888888888887777776665555 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   5.3e-05      0.11      95     134 ..      44      83 ..      32      90 .. 0.87
   2 ?   -0.8   0.1      0.78   1.6e+03      43      64 ..     139     160 ..     125     167 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
  Tropomyosin_1  95 kLkettekLretdvkaeelERkvkaLeqerdewekkyeel 134
                    k    + k re d kae   ++ +++ +++++we+++ +l
     EHU01180.1  44 KFDAVMAKVREFDTKAEACKKEAARVSERKKHWERQVYAL 83 
                    6667899***************************998666 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.78
  Tropomyosin_1  43 knqqleeevekleeklkeakek 64 
                    kn++l + + +l +k+  a+++
     EHU01180.1 139 KNDELKKALQELATKIAAARAA 160
                    5556666666666665555555 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.48   9.6e+02      25      52 ..      21      48 ..      11      75 .. 0.64
   2 ?   10.4   0.0    0.0003       0.6      21      91 ..      89     161 ..      77     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.48
  PP-binding_2 25 kgekvtpsskleelrtredrlwdgldtv 52
                  +g ++tp    + l   e+ l d +d+v
    EHU01180.1 21 EGGDLTPEMIADTLEGIEGMLEDKFDAV 48
                  5555566555555555555555555554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0003
  PP-binding_2  21 kvlrkgekvtpsskleelrtredrlwdgldtvefved..veelfdvivsdevadnfetlqeiadlvvaeraka 91 
                   + l+  ++ t  + l+ + +r++ +   +d v+++ d  ve   +v+ + +  +  ++lqe+a  + a ra  
    EHU01180.1  89 QCLQASNRTTFKTTLNTFTARKGSVSLKIDNVDLLPDefVESHTEVVTTPKNDELKKALQELATKIAAARAAG 161
                   468899999***********************99977667888888777777677789******999999865 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3    0.0018       3.6       5      63 ..      28      84 ..      25     120 .. 0.79
   2 ?    3.6   0.5     0.039        78      68      93 ..     139     164 ..      91     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
                  HHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC CS
  Seryl_tRNA_N  5 klirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkak 63
                   +i + +e ++  l+ +  ++a ++++ e d+k +++++e+  + ++++   +++  +k
    EHU01180.1 28 EMIADTLEGIEGMLEDK--FDAVMAKVREFDTKAEACKKEAARVSERKKHWERQVYALK 84
                  66777777788888777..4788888888888888888888888888888777776665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.039
                   -TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  68 daeeliaevkelkeelkaleaelkel 93 
                   + +el++  +el ++++a+ a+ +e 
    EHU01180.1 139 KNDELKKALQELATKIAAARAAGEEP 164
                   34555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.32
# Mc/sec: 1725.95
//
Query:       EHU01181.1  [L=751]
Description: hypothetical protein CKS_4280 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.071   13.0   0.0    1.6  1  Rad52_Rad22  Rad52/22 family double-strand break repair prote


Domain annotation for each model (and alignments):
>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     4e-06     0.071      82     127 ..     588     636 ..     513     658 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-06
  Rad52_Rad22  82 tlkdGt..yrediGfgtatnv.pskgeafekakKeAvtdAlKrAllqfg 127
                   +kdG+  + e++G    +++ ++   + ++  K+  tdA+K++l  +g
   EHU01181.1 588 YIKDGEkgTVENFGSTPYRQTtKNGIYCDSEVHKKSLTDAIKKCLSMLG 636
                  368888777889998776655055568*****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 5820.62
//
Query:       EHU01182.1  [L=87]
Description: hypothetical protein CKS_4281 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.035   14.3   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.9e-06     0.035      32      55 ..      20      43 ..      18      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-06
                    HTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress 32 LnvspssVsemlkkLekdGyveye 55
                    L ++ps  ++m+ +L  +Gy+ +e
      EHU01182.1 20 LSIAPSAMQKMIIELIAQGYLTTE 43
                    889******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 752.37
//
Query:       EHU01183.1  [L=55]
Description: hypothetical protein CKS_4282 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-15   56.1   0.1    2.8e-15   56.0   0.1    1.0  1  DUF1482   Protein of unknown function (DUF1482)


Domain annotation for each model (and alignments):
>> DUF1482  Protein of unknown function (DUF1482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.1   1.5e-19   2.8e-15       6      57 .]       2      53 ..       1      53 [. 0.92

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.5e-19
     DUF1482  6 LtVcylnggcedlvvgvynteqeClaameeQkiRnggCyPiedvi.dgywiPA 57
                Lt  +++g+++d vv+v++t  eCl+a+ +Qki +g CyP+e++i +g + PA
  EHU01183.1  2 LTTYLTTGEVQDSVVEVFPTYTECLKAADQQKI-EGSCYPVEKIIhQGEETPA 53
                788999***************************.***********55566787 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 463.28
//
Query:       EHU01184.1  [L=54]
Description: hypothetical protein CKS_4283 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   12.9   0.1      0.093   12.7   0.1    1.2  1  IL2       Interleukin 2


Domain annotation for each model (and alignments):
>> IL2  Interleukin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.2e-06     0.093     107     137 ..      15      43 ..       2      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-06
                 HHHHHT-SSS-----B-EEEEEHHHHHHHHH CS
         IL2 107 tvlklkGsettftceyddetativeflnkWi 137
                  + +++G et   c+ d+++ati  f  +Wi
  EHU01184.1  15 CIYEIQGDET--VCDADKQQATIESFTYEWI 43 
                 468999*999..8*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 448.40
//
Query:       EHU01185.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01185.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 947.37
//
Query:       EHU01186.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01186.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01186.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01186.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01186.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 815.52
//
Query:       EHU01187.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01187.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01187.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01187.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01187.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01187.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01187.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01187.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01187.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01187.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01187.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01187.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01187.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01187.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01187.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01187.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01187.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01187.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2251.32
//
Query:       EHU01188.1  [L=336]
Description: histidine ammonia-lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.3e-114  380.6   3.0   1.1e-113  380.4   3.0    1.0  1  Lyase_aromatic  Aromatic amino acid lyase


Domain annotation for each model (and alignments):
>> Lyase_aromatic  Aromatic amino acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.4   3.0    6e-118  1.1e-113     170     464 .]       2     292 ..       1     292 [. 0.98

  Alignments for each domain:
  == domain 1  score: 380.4 bits;  conditional E-value: 6e-118
                     T------TTTHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHHHCCS--HHHHHHHHHHHHHTTT-SSS...-SB- CS
  Lyase_aromatic 170 glepleleakEgLAlinGtalmtalaalaledaerllrladvaaAlslealrGsteafdprihalrphpgqievAarlrallegSelv.shekde 263
                     gl+p+ l++kEgLAl+nGt+++tala+  l++ae+l+++  +a+Alslea++Gs ++fd+rih++r + gqi+vAa++ al+egSe++ sh  ++
      EHU01188.1   2 GLTPFVLGPKEGLALLNGTQVSTALALRGLFEAENLFAAGLMAGALSLEAIKGSLKPFDARIHQARGQHGQIAVAAAVTALIEGSEILgSH-THC 95 
                     89**************************************************************************************999.899 PP

                     SS-SS--HHHHTHHHHHHHHHHHHHHHHHHHHHHHTS--SSSEE.EGCCTCCE---TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTTTT CS
  Lyase_aromatic 264 erlvQDayslRcaPqvhGavldalaaarevleiElnsatDNPlvddeeegavlsgGnFhgepvalalDklaialaelaniserrierLvnpalse 358
                     +r vQD+ys Rc+Pqv+Ga+ld+l++a+++l+iE+n+a+DNPlv  +e+g+v+sgGnFh+epva+a+D +a+a+ae+++iserr++ L+++ ls 
      EHU01188.1  96 GR-VQDPYSVRCVPQVMGACLDNLSHAARILQIEANAASDNPLV-FTETGDVISGGNFHAEPVAFAADIIALAVAEVGAISERRLALLLDTGLS- 187
                     **.*****************************************.889**********************************************. PP

                     T--GGG-SSTCTTB-TTHHHHHHHHHHHHHHHCHCS-SGGG--TCTTTTCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCC-H CS
  Lyase_aromatic 359 gLpafLaaeepglnsgfmiaqytaaalvsenktlahPasvdsiptsanqeDhvSmgliaarkllevvenlekvlAiellaaaqaldlrrklkssp 453
                     gLp+fL+ +++g+nsgfmiaq+taaal+senk+lahP svds+ptsanqeDhvSm+++aar+l +++ n + v++ie++aaaq+++++r l+ss+
      EHU01188.1 188 GLPPFLV-RDGGVNSGFMIAQVTAAALASENKSLAHPGSVDSLPTSANQEDHVSMATYAARRLGDMCFNSAAVVGIEAMAAAQGIEFHRPLQSSA 281
                     *******.9******************************************************************************88788899 PP

                     HHHHHHHHHHC CS
  Lyase_aromatic 454 ateavyeavre 464
                       e+++ ++re
      EHU01188.1 282 LIEQAIGTIRE 292
                     99999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2583.87
//
Query:       EHU01189.1  [L=560]
Description: urocanate hydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-92  307.6   0.0    4.5e-92  306.9   0.0    1.4  1  Urocanase_C  Urocanase C-terminal domain
    9.6e-83  277.0   0.0    1.3e-82  276.6   0.0    1.2  1  Urocanase    Urocanase Rossmann-like domain
    6.2e-61  203.7   0.0      1e-60  203.0   0.0    1.3  1  Urocanase_N  Urocanase N-terminal domain


Domain annotation for each model (and alignments):
>> Urocanase_C  Urocanase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.9   0.0   7.5e-96   4.5e-92       1     195 [.     357     551 ..     357     552 .. 0.99

  Alignments for each domain:
  == domain 1  score: 306.9 bits;  conditional E-value: 7.5e-96
                  HHHTTT---EEEEETT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----SS-EEE----TTHHHHHHHHHHHHHHHSSSSS-EEEEE-S-STTS CS
  Urocanase_C   1 plFsegkGPFRwvalsgdpeDlaktdeavlellkekedlirWikeAeekvkvqGlpaRilyldaeeRekialafnelvregeikapvvlgRDhlDvgs 98 
                  plF+egkGPFRwvalsgdpeD++ktd+ ++ l++e+++l+rW+++A+e++++qGlpaRi++l+ +eR+ +alafn++vr+ge+kap+v+gRDhlD+gs
   EHU01189.1 357 PLFCEGKGPFRWVALSGDPEDIYKTDAKLKALFPEHKTLHRWLDMAQERIAFQGLPARICWLGLGERHLAALAFNDMVRTGELKAPIVIGRDHLDCGS 454
                  79************************************************************************************************ PP

                  EE-TTTTTTT-TTS-TTB-HHHHHHHHHHHHHT-SEEEEEESTTT-TTS-EEEEEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHH CS
  Urocanase_C  99 vasPfretenikDGsdaiaDwavlnallnaargatwvslhnGGgvgiGesinagfvvvldGteeaeerlervltaDvalGvvRradagyeealevak 195
                  vasP+rete++kDGsda++Dw++lnalln+a gatwvslh+GGgvg+G s++ag+v+v dG+e+a++rl rvl +D+a+Gv+R+adagye a+++a+
   EHU01189.1 455 VASPNRETEAMKDGSDAVSDWPLLNALLNTAGGATWVSLHHGGGVGMGFSQHAGVVIVCDGSEAADARLGRVLWNDPATGVMRHADAGYELAQTCAQ 551
                  ********************************************************************************************99876 PP

>> Urocanase  Urocanase Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.6   0.0   2.1e-86   1.3e-82       1     210 []     142     354 ..     142     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: 276.6 bits;  conditional E-value: 2.1e-86
                 TTHHHHHHHHHHHHHHHHHHST.T--TT-EEEEE--STTGGGHHHHHHHTT-EEEEEES-HHHHHHHHHTTS-SEEES-HHHHHHHHHHHHHCT--EEE CS
   Urocanase   1 GpQGivqGTyetllnaarkklgkgdlkgklvvtaGlGgMsgaQplAatiagavalvvevdesriekrleqgyvdevaddldealalikeakkekealsi 99 
                 G+QGivqGTyet+++a+r++++ +dl+g++++taGlGgM+gaQplA+ +aga++l++e++esri+ rl+++yvd++a++ldeal+li++a+++k+a+s+
  EHU01189.1 142 GAQGIVQGTYETFVEAGRQHYN-NDLSGRWILTAGLGGMGGAQPLAGVLAGACVLAIECQESRIDFRLRTRYVDHKATSLDEALTLIHAATQAKKAISV 239
                 89*******************9.**************************************************************************** PP

                 EEES-HHHHHHHHHCT....T---SEE---S-TT-TTTS---TT--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-EE-B-SS-HHHHHHH CS
   Urocanase 100 gllgnvvdvleelvee....gvlvdlvsdqtsahdplnGYlPegltleeakelrkedpekfkeevkeslarhveailklqekGavvfdYGnnlrkeake 194
                 gllgn++++l+elv++    g ++d+v+dqtsahdp+nGYlP +++++++++ rk++p+++++++++s+a hv+a+l++ + G+ + dYGnn+r+ a +
  EHU01189.1 240 GLLGNAAEILPELVKRakagGPKPDIVTDQTSAHDPVNGYLPIDWDVSRWEQERKANPKAVEKAARASMAVHVQAMLDFCHMGIPTVDYGNNIRQVALD 338
                 ***************9998769***************************************************************************** PP

                 TT-TTGGGS-BHHHHT CS
   Urocanase 195 agvkeafkypsyvedi 210
                 +gv++af++p++v+++
  EHU01189.1 339 EGVSNAFDFPGFVPAY 354
                 **************98 PP

>> Urocanase_N  Urocanase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.0   1.7e-64     1e-60       1     127 []      13     139 ..      13     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 1.7e-64
                  -----SS--SSSSHHHHHHHHHHHHCT-TTT-SBGGGTEEETTTEESSSSHHHHHHHHHHHHH--TTEEEEEETTEEEEEEE--TTS-SEEEEES-B- CS
  Urocanase_N   1 ikakrgeelkaksweaeailrmleNnLdpevaekpeeLvvYggtgkaarnweqfelivktLkeleedetLlvqsGkpvglfksheeaPrvliansnlv 98 
                  i+a+rg++l++ +w  ea++rm++NnLdp+vae+pe+LvvYgg+gkaarnw++fe+i+++L+ l+ detLl+qsGkpvg+f++h++aPrvl+ansnlv
   EHU01189.1  13 IRAPRGNTLHCANWLIEAAYRMIQNNLDPDVAERPEDLVVYGGIGKAARNWACFEQILRSLQVLQPDETLLIQSGKPVGVFRTHADAPRVLLANSNLV 110
                  79************************************************************************************************ PP

                  GGG-SHHHHHHHHHTT---B-TTTTTTT- CS
  Urocanase_N  99 pkyateeefeeleakgltmyGqmtAgswi 127
                  p++a++++f+el+++gl+myGqmtAgswi
   EHU01189.1 111 PHWANWDHFHELDKAGLMMYGQMTAGSWI 139
                  ****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 4581.55
//
Query:       EHU01190.1  [L=387]
Description: amidohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-32  113.3   0.1    1.7e-32  112.8   0.1    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.9e-12   46.5   0.0    5.9e-12   45.5   0.0    1.5  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.094   12.4   0.0       0.15   11.7   0.0    1.3  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.1   2.9e-36   1.7e-32       2     206 ..      69     379 ..      68     380 .. 0.92

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 2.9e-36
                    EEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEE CS
                    xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavf 95 
                    l++++D++p +e+ d+    +++ ++ G+++++G+d++++++laa++ l+a ++      gt++++fqp+EE   gGa++++e gl+ r+++dav+
     EHU01190.1  69 LRADMDALPiNEKGDA---AWRSATP-GVMHACGHDGHTAILLAAAKHLAATRRF----SGTVHFIFQPAEENL-GGARKMVEeGLFTRFPMDAVY 155
                    89*******8777766...7899988.**********************998887....8************65.9*******777789******* PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                    ++h + pg++  g la++++                                                                            
     EHU01190.1 156 AMHNW-PGLPL-GSLAVNPGammasldafeitlsgkschaampesgadpmvvaaelilalqtipsrrlsplssavvsvtqiqggeainvipeqivl 249
                    *****.99999.99999999**************************************************************************** PP

                    ................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEES.SSBHTHHHH.TTTE.EEEEE CS
                    ................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxx.xxxx.xxxxx RF
  Peptidase_M20 116 ................................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsg.pggtdarff.agip.tvmif 175
                                                       ++ +  g+pvt+n++  ++ ++++a ++fge  v+  v + ++++d++ + ++ p +++++
     EHU01190.1 250 rgtvrclqddvrkrvhalvddfvttlpkpfgvGGAIH-WLPGYPVTANHAGPAQQVHDVAVSTFGEGqVRWQVNPsMASEDFACMlEACPgAYFWL 344
                    ****************************999767888.46999*****8888999999999999766688889999*********7777967799* PP

                    E.SSG...GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    x.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 176 g.pgs...glaHspnEyvdledlekgikvlarlle 206
                    g  g    +  H+ + +++++ +++gi+++++l+e
     EHU01190.1 345 GaDGAtpsAPLHNAHYDFNDALIPTGIQFWQNLVE 379
                    *666345677788888888************9997 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   9.8e-16   5.9e-12       8     104 ..     181     275 ..     177     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 9.8e-16
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSC CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeileke 104
                  ++it  gk++H+++p+ ga+++  +a+l+ +l+  +++     +l+   ++vt+i+gG a+nvip++  +  ++R l+ + +++v + + +++ ++
  EHU01190.1 181 AFEITLSGKSCHAAMPESGADPMVVAAELILALQTIPSRRL--SPLSSAVVSVTQIQGGEAINVIPEQIVLRGTVRCLQDDVRKRVHALVDDFVTTL 275
                 589*********************************99966..9999999*******************************9999999999888765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.5e-05      0.15      42      93 ..     103     156 ..      55     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
                    HHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHH....HHCCCTTEEE CS
  Peptidase_M28  42 vaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafak....akpelkkiaa 93 
                    +a+lL  a+ laa   r   +v f+f  aEE  l G++++++     +++++++ a
     EHU01190.1 103 TAILLAAAKHLAATR-RFSGTVHFIFQPAEE-NLGGARKMVEeglfTRFPMDAVYA 156
                    79**********955.99*************.699999999644333346666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2895.61
//
Query:       EHU01191.1  [L=322]
Description: putative transferase/phosphorylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-09   34.9   0.2    6.5e-08   32.3   0.1    2.3  2  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
    3.7e-05   23.4   0.0    0.00011   21.8   0.0    1.7  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
  ------ inclusion threshold ------
      0.087   13.0   0.1        0.2   11.8   0.1    1.5  1  DUF4232          Protein of unknown function (DUF4232)


Domain annotation for each model (and alignments):
>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   1.1e-11   6.5e-08       2      61 ..       5      68 ..       4      70 .. 0.88
   2 ?   -0.7   0.0      0.21   1.3e+03      48      61 ..     271     284 ..     269     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.1e-11
                     HHHHHHHTT.....---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHH CS
  Glycos_trans_3N  2 diikklrdg....eeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmre 61
                     +iik + +g     + + + + ++  ++l+g+v++ ++++ L+Alr+kGe ++E+ ++ +Am +
       EHU01191.1  5 KIIKEVGRGknhaRDIDFDSAVALYGAMLDGSVPELEMGSILIALRIKGEGEAEMRGFYQAMQA 68
                     57777777776545888899999999************************************86 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
                      -HHHHHHHHHHHHH CS
  Glycos_trans_3N  48 taeEiaalaeAmre 61 
                      +aeE+a +++ +++
       EHU01191.1 271 SAEETARWTQEVLN 284
                      79******998875 PP

>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.9e-08   0.00011      19     240 ..      96     314 ..      90     320 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-08
                      HHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTST--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHHHHHTT.-SSHHHCHHHH CS
  Glycos_transf_3  19 NiStaaaivvAaaGvkvakhgnrsvssksGsaDvLealgvnleltpeeveklleevgvgflfapeyhkamkhvapvrrelgirTvfnlLGPLin 112
                      N++  +a+v+  +G++v  hg         s  v  alg+   +t+e+++ ll++ +++f+   +  ++m + +  r  +g+r     L  L +
       EHU01191.1  96 NLTPLLALVLNRLGLPVLVHGVSDDATRITSEAVFAALGIMPVTTAEQAQTLLDKGELVFITIDHLCPPMAKQLSLRWRMGVRNSAHTLAKLAT 189
                      888999***************999999999**************************************************************** PP

                      H..T..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCS.TSHHHHHHHHHHHHHHHH.TTEEEEEEEEEGSSTSSSEEESHHHHSSHHHHHHH CS
  Glycos_transf_3 113 p..arvkkqllgvyskelaeklaevlkelgveralvvhg.dGldevsllakttvaelk.dgeiteytlepedfglkraelealeggepkenaei 202
                      p   r   +l +v ++e ++ +a+ ++++   + ++++g +G   +++     +  +  +g++ e+ +e   ++  + +l a ++  ++e a+ 
       EHU01191.1 190 PfgEREALRLSSVSHPEYVPRVATFFNDIDAPA-ILLNGtEGEVYANPQRCPSISYVGgAGQQAEVWVE--RQPEISVALPADKS--AEETARW 278
                      *5445566789*****************87654.44444466555555544444444434444444443..33333333333333..5777777 PP

                      HTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHH CS
  Glycos_transf_3 203 lkavlegkksaakrdlvllnagaalvlagkadslkegv 240
                       ++vl++++       + l  +  l ++g+a +l++g+
       EHU01191.1 279 TQEVLNQQRPLP--ASLRLQIACCLRASGEAATLQAGL 314
                      777777777663..566666677777777777777766 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.3e-05       0.2      38      92 ..     239     291 ..     237     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
     DUF4232  38 yPgVslldadgqqvgaaaeregpaavpvtLapGesAyaglrwtnaggdgdgecta 92 
                  P++s+++++gqq++  +er++   ++v+L   +sA  + rwt+   +++++ +a
  EHU01191.1 239 CPSISYVGGAGQQAEVWVERQPE--ISVALPADKSAEETARWTQEVLNQQRPLPA 291
                 599************77777644..44*****************98877766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2513.91
//
Query:       EHU01192.1  [L=721]
Description: ATP-dependent DNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-25   88.5   0.0    1.1e-24   87.6   0.0    1.4  1  Helicase_C_2  Helicase C-terminal domain
    1.1e-07   31.8   0.0    3.3e-05   23.7   0.0    3.0  3  DEAD          DEAD/DEAH box helicase
    1.5e-06   27.9   0.0    2.9e-06   27.0   0.0    1.4  1  DEAD_2        DEAD_2
    1.5e-06   28.3   0.0    5.3e-05   23.3   0.0    2.3  1  ResIII        Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.13   12.5   0.1         11    6.3   0.0    2.8  2  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0     3e-28   1.1e-24       8     168 ..     535     689 ..     529     691 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 3e-28
  Helicase_C_2   8 vpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykek..kkkgaillavcrGklsEGidfsddllraviivglPfpnpkdpe 102
                   +++g+lv+f S + ++++ve+l e     ++ ++v+ +++ r+++++ ++++  +++++il+++   ++ EG+d++++ll+ v i ++ fp++++p 
    EHU01192.1 535 KHKGILVLFASGRAMQQFVEALPEL----RLMMLVQ-GDQPRSRLIALHRKRieQGETSILIGLQ--SFAEGLDLKGELLSQVHIHKIAFPPIDSPV 624
                   679*******************986....4689999.9**********9995569**********..****************************** PP

  Helicase_C_2 103 veakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwl 168
                   + +  e+l++ ++  +++   lp a  ++ Q +GRliR+++ yg iv+ D+R+ ++ ++++l+ +l
    EHU01192.1 625 ILTEGEWLKSLKR-YPFEVQSLPSASFTLIQQVGRLIRSHQCYGEIVIYDRRLLSKAYGARLLAAL 689
                   *************.***********************************************99877 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   9.2e-09   3.3e-05       2      66 ..      29      95 ..      28     120 .. 0.82
   2 !    4.2   0.0    0.0089        32      93     136 ..     213     256 ..     196     272 .. 0.78
   3 ?   -1.9   0.0      0.66   2.4e+03     158     170 ..     455     465 ..     438     470 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 9.2e-09
                HHHHHHHHHHH......TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHH CS
                xxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  2 diQaeaiplil......gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnn 66
                + Q+++i ++       +g+++ v+a+TG GKTl +lip + +v+   + ++++ +i +   +L  q++++
  EHU01192.1 29 PAQRQMIAEVAkclsgdDGRHLAVEAPTGVGKTLSYLIPGI-AVS---RAEEKRLVISTANVALQDQIFSK 95
                67888888887777787889*********************.553...67888999999999999999876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0089
                 HHHTTCSEEEEEHHHHHHHHHCTS.SHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddllstgk.lnlsqvrflVlDEadrlldq 136
                 ++ ++vd+vv+++  ++  +++++ l   +  +lV+DE + l d 
  EHU01192.1 213 EI-EQVDLVVANHALVMAAMENESvLPPAKNLMLVVDEGHHLPDV 256
                 45.679********9999886555266555569*******99886 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.66
                 TTSEEEEEESSBS CS
                 xxxxxxxxxxxxx RF
        DEAD 158 lqrqvivlSATlp 170
                    +v+v SATl 
  EHU01192.1 455 P--HVVVTSATLR 465
                 2..3999****96 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     8e-10   2.9e-06     107     170 ..     202     264 ..     150     268 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 8e-10
                 CT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EE CS
      DEAD_2 107 lklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasve 170
                  + CP++++r+ +e++d++++ +++++ +   es+     kn ++++DE+h + dv+++a+ ++
  EHU01192.1 202 YRECPFFIARREIEQVDLVVANHALVMAAMENESVL-PPAKNLMLVVDEGHHLPDVARDALEMS 264
                 567*********************999999999996.799******************998664 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.5e-08   5.3e-05       3     146 ..      26     255 ..      24     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.5e-08
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH.HHG.......................... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl.eef.......................... 74 
                  +r+ Q ++i ++++ l+ ++ +++ ++++TG+GKTl ++    +++++ +e++ ++   + +l +q   +++                          
  EHU01192.1  26 IPRPAQRQMIAEVAKCLSGDDGRHLAVEAPTGVGKTLSYLIPGIAVSRA-EEKRLVISTANVALQDQIFsKDLpllkkiipdltftaafgrgryvcprn 123
                 589***************99999999**********9986555555553.4557777778889999999544477777788888898999999999999 PP

                 ................................................GGGTGG....GEEEESSS-B--............................. CS
      ResIII  75 ................................................kkflseaykeigkkvsgdkkka............................. 96 
                                                                 +                  +++                             
  EHU01192.1 124 laalvaddhqqadllfyldddavsstkdeqilcgrlqksldrhqwdglR------------------DHSdenvsdslwqrlstdkasclgvhcrwyre 204
                 9988888888888888888765555555555555544444444443331..................11133333444444444446667777777777 PP

                 ............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII  97 .....kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlga 146
                       ++++++ +++v++   + a++    e++  l + +++++++DE H+l +
  EHU01192.1 205 cpffiARREIEQVDLVVANHALVMAAM----ENESVLPPAKNLMLVVDEGHHLPD 255
                 777778999999999999999999999....788889999999*********987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0031        11       4      22 ..      46      64 ..      43      65 .. 0.89
   2 ?    2.9   0.0     0.035   1.2e+02      91     109 ..     240     261 ..     221     279 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0031
      AAA_22  4 tagilvvtGesGtGKTtll 22
                + ++l+v +++G+GKT+++
  EHU01192.1 46 DGRHLAVEAPTGVGKTLSY 64
                57899***********986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.035
      AAA_22  91 v.ielliiDEaqhlrs...eeal 109
                 +   +l++DE +hl +    +al
  EHU01192.1 240 AkNLMLVVDEGHHL-PdvaRDAL 261
                 24679*********.54444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5095.03
//
Query:       EHU01193.1  [L=172]
Description: GNAT family acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-14   53.5   0.0    3.9e-14   52.9   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.8e-12   46.7   0.1    4.9e-12   45.9   0.1    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    9.7e-09   35.5   0.1    2.7e-08   34.1   0.0    1.6  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.2e-07   31.9   0.0    1.6e-07   31.4   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.6e-06   27.3   0.1    6.4e-06   26.1   0.1    1.6  1  FR47             FR47-like protein
    1.6e-05   25.0   0.1    2.8e-05   24.1   0.1    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    0.00088   19.2   0.2     0.0027   17.6   0.1    2.0  3  Acetyltransf_13  ESCO1/2 acetyl-transferase
  ------ inclusion threshold ------
      0.019   14.7   0.5      0.026   14.2   0.5    1.3  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
      0.082   13.0   0.0      0.099   12.8   0.0    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0     2e-17   3.9e-14      21     108 ..      42     136 ..      16     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2e-17
                     HHHHHHH......HHSTTCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  21 eeefees......fsleaegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                      ++++ +      +++  ++llva+  g++i++++l+     + +++a+i  l V+p +r++G++++L++++e+rar++g + +vl+++  ++a+
      EHU01193.1  42 AAIHQFWqrqlagLEQGQSELLVARQHGTVIATVMLNASAMpNGRHRAEISKLLVHPRARRQGIARQLMQQAEQRARQQGKRLLVLDTRRGDVAS 136
                     4442222244544666777*****************999999899**********************************99889**997765554 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   2.5e-15   4.9e-12      21     109 ..      51     147 ..      28     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 2.5e-15
  Acetyltransf_10  21 alrerieegealllvaeeggkivGvi.....elrdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklG 105
                      +l+   e+g+  llva + g+++ ++     ++ +g+   +is l V+p +r+qGi+++L++++e++a+++g +l  l  +  + a ++Y  l 
       EHU01193.1  51 QLAGL-EQGQSELLVARQHGTVIATVmlnasAMPNGRhraEISKLLVHPRARRQGIARQLMQQAEQRARQQGKRLlVLDTRRGDVASELYLALN 143
                      33333.48999999999999999888455544444448889******************************9999999999999********** PP

  Acetyltransf_10 106 Fkav 109
                      +++ 
       EHU01193.1 144 WQVA 147
                      9986 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.5     5e+03      11      37 ..      29      49 ..      20      55 .. 0.56
   2 !   34.1   0.0   1.3e-11   2.7e-08       3      72 ..      60     142 ..      57     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
                    TTEEEEEEEEEEESTCTEEEEE-GGGT CS
  Acetyltransf_7 11 dgkivGfialslldaeitrlaVdpeyr 37
                    dg  vGfi          r a+++ ++
      EHU01193.1 29 DGASVGFIDPDD------RAAIHQFWQ 49
                    455666654222......344444444 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.3e-11
                     EEEEEEEETTEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEETHH...HHHHHHHHT CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld.......aeitrlaVdpeyrgkGiGraLleaae.....kgiileqlelnae...kaikfYekl 72 
                     +e++Va++ g ++ ++ l  ++       aei +l V+p +r++Gi+r+L++ ae     +g +l    l+++    a ++Y  l
      EHU01193.1  60 SELLVARQHGTVIATVMLNASAmpngrhrAEISKLLVHPRARRQGIARQLMQQAEqrarqQGKRLL--VLDTRrgdVASELYLAL 142
                     67899*9999999999988888999988888888*****************952224445562222..23332344677788766 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   8.1e-11   1.6e-07      30     113 ..      46     128 ..      16     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 8.1e-11
                     HHHHHHHHHHT..TSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE- CS
  Acetyltransf_9  30 eireyfrklle..esrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllf 113
                     +++++    le  +s+ l+a+++g+++++++l++  +  p+ + + a ++   v+p  r++g++++L+++a +++r++g++l +l 
      EHU01193.1  46 QFWQRQLAGLEqgQSELLVARQHGTVIATVMLNASAM--PNGRHR-AEISKLLVHPRARRQGIARQLMQQAEQRARQQGKRLLVLD 128
                     3444444444444679*****************9887..455544.579999******************************9985 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   3.2e-09   6.4e-06      22      79 ..      89     146 ..      78     149 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.2e-09
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                  e++ l v+p +rr+G +++l ++  ++ +++gk +l++     + +++ly +l++++
  EHU01193.1  89 AEISKLLVHPRARRQGIARQLMQQAEQRARQQGKRLLVLDTRRGDVASELYLALNWQV 146
                 799***************************************************9986 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   1.4e-08   2.8e-05      22      61 ..      86     125 ..      63     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-08
  Acetyltransf_CG  22 egvldfthTeVpeelrGkGiAkkLvkaalddareeglkvv 61 
                       ++ ++ +  V+++ r++GiA++L+++a + ar++g++  
       EHU01193.1  86 RHRAEISKLLVHPRARRQGIARQLMQQAEQRARQQGKRLL 125
                      5678899999**************************9975 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.9   9.9e+03      20      28 ..      71      79 ..      65      81 .. 0.68
   2 !   17.6   0.1   1.4e-06    0.0027       7      32 ..      91     116 ..      89     136 .. 0.90
   3 ?   -2.4   0.0       2.5   5.1e+03      16      25 ..     129     138 ..     122     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.9
  Acetyltransf_13 20 giAtkLlda 28
                      iAt +l+a
       EHU01193.1 71 VIATVMLNA 79
                     388888886 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.4e-06
  Acetyltransf_13   7 isriWvssshRrkgiAtkLldaaren 32 
                      is++ v++ +Rr+giA++L+++a ++
       EHU01193.1  91 ISKLLVHPRARRQGIARQLMQQAEQR 116
                      8999*****************99876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.5
  Acetyltransf_13  16 hRrkgiAtkL 25 
                       Rr  +A++L
       EHU01193.1 129 TRRGDVASEL 138
                      6888888887 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.5   1.3e-05     0.026      37      90 ..      59     117 ..      33     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
        PanZ  37 egalfaarFNdRlLgAvkveledk.....eaelsdlcVRevTRrRGVgsyLleearrqa 90 
                 + +l++ar     ++ v ++ ++       ae+s+l V    Rr G+++ L+++a ++a
  EHU01193.1  59 QSELLVARQHGTVIATVMLNASAMpngrhRAEISKLLVHPRARRQGIARQLMQQAEQRA 117
                 4567777776666666666655433333399*********************9887765 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.9e-05     0.099      38     114 ..      49     125 ..      21     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
  Acetyltransf_4  38 ekflealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienl 114
                     ++ l+ l+++++ ++ + + ++++++  l++      ++ ae+s +l++  ++ +g++r+l++  eq++++q+ + l
      EHU01193.1  49 QRQLAGLEQGQSELLVARQHGTVIATVMLNASAMPNGRHRAEISKLLVHPRARRQGIARQLMQQAEQRARQQGKRLL 125
                     46677775555556556669*****99999555556899999999999999********************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1363.85
//
Query:       EHU01194.1  [L=187]
Description: XRE family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-13   48.2   0.2    1.2e-12   47.6   0.2    1.3  1  HTH_3       Helix-turn-helix
    2.4e-12   47.0   3.4    3.9e-12   46.3   3.4    1.4  1  HTH_31      Helix-turn-helix domain
    1.1e-08   35.0   0.0    1.5e-08   34.5   0.0    1.2  1  HTH_19      Helix-turn-helix domain
    2.3e-07   31.1   0.2    3.4e-07   30.6   0.2    1.3  1  HTH_26      Cro/C1-type HTH DNA-binding domain
    1.2e-05   25.0   0.3    2.2e-05   24.2   0.3    1.4  1  HTH_25      Helix-turn-helix domain
    0.00096   18.9   0.3     0.0018   18.0   0.3    1.4  1  HTH_23      Homeodomain-like domain
     0.0039   17.1   0.1     0.0064   16.4   0.1    1.3  1  HTH_37      Helix-turn-helix domain
      0.006   16.3   0.0     0.0093   15.7   0.0    1.3  1  Cupin_2     Cupin domain
  ------ inclusion threshold ------
      0.044   13.3   0.1       0.08   12.5   0.1    1.4  1  Sigma70_r4  Sigma-70, region 4
      0.071   12.9   0.1       0.19   11.6   0.1    1.8  1  HTH_IclR    IclR helix-turn-helix domain
      0.076   12.7   0.1        1.5    8.5   0.1    2.4  2  GntR        Bacterial regulatory proteins, gntR family
       0.13   12.4   0.1       0.97    9.6   0.1    2.2  2  HTH_28      Helix-turn-helix domain
       0.16   12.1   0.0       0.36   11.0   0.0    1.6  1  HTH_AraC    Bacterial regulatory helix-turn-helix proteins, A
       0.37   10.8   2.2       0.44   10.5   1.0    1.8  2  HTH_Crp_2   Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.2   9.7e-16   1.2e-12       1      53 [.      14      66 ..      14      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 9.7e-16
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                l+elR ++g+s+ eL+ ++G+sr+t+sriE+ e++P+   l +l+ a+ ++++
  EHU01194.1 14 LAELRIKQGWSLDELSTATGISRATLSRIERAETSPTAALLNRLCVAYSLTMS 66
                789*****************************************999988775 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   3.4     3e-15   3.9e-12       1      57 [.       9      64 ..       9      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3e-15
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                +L+a+L++lR ++G+s++e+  ++g+s++tlsr+E+++   p+ a l++l+ a+ l+
  EHU01194.1  9 RLAARLAELRIKQGWSLDELSTATGISRATLSRIERAET-SPTAALLNRLCVAYSLT 64
                69*************************************.6*************987 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.2e-11   1.5e-08       2      63 ..      12      72 ..      11      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.2e-11
      HTH_19  2 erLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllqge 63
                 rL e+R++ g++++el+  +gisr+ +s iE  ++  p+a ll++++ a+ ++  +ll+ +
  EHU01194.1 12 ARLAELRIKQGWSLDELSTATGISRATLSRIERAET-SPTAALLNRLCVAYSLTMSRLLSEV 72
                69**********************************.***********99999999998765 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.2   2.7e-10   3.4e-07       1      59 [.      13      70 ..      13      74 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.7e-10
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                +L el ++ g +  eL+ +tgis+atlsr+   + +++++  L+++C a   t++ Ll+
  EHU01194.1 13 RLAELRIKQGWSLDELSTATGISRATLSRIERAE-TSPTAALLNRLCVAYSLTMSRLLS 70
                7999****************************99.6*****************999885 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.3   1.7e-08   2.2e-05       1      34 [.      13      46 ..      13      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.7e-08
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEedd 34
                rL + R ++g+sl+e++  t I+ ++l ++E+ +
  EHU01194.1 13 RLAELRIKQGWSLDELSTATGISRATLSRIERAE 46
                6999***************************976 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   1.4e-06    0.0018      14      40 ..      18      45 ..       6      53 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
      HTH_23 14 lae.GlsvreIAreLgvsrrTvyrwlkr 40
                  + G+s  e +++ g+sr T++r+ ++
  EHU01194.1 18 RIKqGWSLDELSTATGISRATLSRIERA 45
                2225*********************987 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     5e-06    0.0064      18      55 ..       9      46 ..       3      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5e-06
                HHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT- CS
      HTH_37 18 qlalaiaeliekrelsqseaaqllgiaqPkvsrllrgk 55
                +la+++ael+ k+++s  e+ +++gi+++ +sr++r++
  EHU01194.1  9 RLAARLAELRIKQGWSLDELSTATGISRATLSRIERAE 46
                7999*******************************976 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.2e-06    0.0093      20      50 ..     133     163 ..     114     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.2e-06
                 EEEEEEEESEEEEEECTEEEEEETTEEEEE- CS
     Cupin_2  20 deffyVleGegeltvdgeeveleaGdsvyfp 50 
                 ++ +   +G++++t++ + ++l++Gds+ f 
  EHU01194.1 133 EQHIWLRQGQLTVTMGAQSWTLGPGDSLRFH 163
                 47888899*******************9985 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.3e-05      0.08      14      42 ..      16      44 ..      10      45 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
                HHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 14 elrfgeglTleEIgerlgiSrerVrqiek 42
                elr  +g++l E++   giSr + ++ie+
  EHU01194.1 16 ELRIKQGWSLDELSTATGISRATLSRIER 44
                578889*********************98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00015      0.19      17      38 ..      21      42 ..       8      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                SS-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR 17 qeltlselArrtglpkStvhRl 38
                q+++l el+ +tg++++t +R+
  EHU01194.1 21 QGWSLDELSTATGISRATLSRI 42
                789***************9996 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0012       1.5       3      41 ..       4      39 ..       2      47 .. 0.92
   2 ?    1.6   0.0      0.17   2.2e+02      11      24 ..     109     122 ..     104     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHH CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttv 41
                ++ ++rL +++ + +++ G  L    eL+++ g+sr t+
  EHU01194.1  4 DNTEQRLAARLAELRIKQGWSL---DELSTATGISRATL 39
                67899*****************...************98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.17
                 HHHHTTSS-TTSB- CS
        GntR  11 edIlsgelrpGdkL 24 
                  ++++g+lrpG+++
  EHU01194.1 109 CELIEGTLRPGARI 122
                 5799*******987 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00076      0.97       8      34 ..      18      44 ..      11      56 .. 0.83
   2 ?    0.1   0.0       0.7     9e+02      38      51 ..      73      86 ..      64      86 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00076
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWik 34
                ++++G s +e++ + gisr t++r  +
  EHU01194.1 18 RIKQGWSLDELSTATGISRATLSRIER 44
                456888*****************9876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.7
      HTH_28 38 egGiagLvprrrrp 51
                e+G + L pr r p
  EHU01194.1 73 EEGNDLLIPRDRQP 86
                45999*****9976 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00028      0.36       5      32 ..      19      46 ..      17      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
                CSCT--HHHHHHHTTSSHHHHHHHHHHH CS
    HTH_AraC  5 lstnltiediAdelgfSrsyFsrlFkke 32
                +++++++++++ + g+Sr ++sr+ ++e
  EHU01194.1 19 IKQGWSLDELSTATGISRATLSRIERAE 46
                5799*******************86666 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   0.00035      0.44       1      41 [.       8      42 ..       8      45 .. 0.86
   2 ?   -3.2   0.0       6.6   8.5e+03      37      46 ..      64      73 ..      64      75 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
                HHHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHH CS
   HTH_Crp_2  1 qRlArfLlrlaeraggeielpltqeelAsmlGltretvsri 41
                qRlA+ L +l+ ++        + +el+   G++r t+sri
  EHU01194.1  8 QRLAARLAELRIKQ------GWSLDELSTATGISRATLSRI 42
                89999999996663......3578****************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.6
                HHHHHHHHHH CS
   HTH_Crp_2 37 tvsrilseLk 46
                t+sr+lse +
  EHU01194.1 64 TMSRLLSEVE 73
                7899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1552.04
//
Query:       EHU01195.1  [L=244]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-19   67.9   0.1    2.9e-18   65.7   0.0    2.0  2  MerR_1       MerR HTH family regulatory protein
    1.1e-13   50.7   0.0    2.5e-13   49.5   0.0    1.7  1  MerR         MerR family regulatory protein
      9e-06   25.8   0.1    4.4e-05   23.6   0.0    2.2  2  HTH_17       Helix-turn-helix domain
    0.00039   20.2   0.0    0.00078   19.3   0.0    1.5  1  MerR_2       MerR HTH family regulatory protein
     0.0012   19.1   0.4     0.0041   17.4   0.0    2.1  2  HTH_Tnp_1    Transposase
      0.005   16.6   0.0       0.02   14.7   0.0    2.0  1  HTH_23       Homeodomain-like domain
     0.0089   15.9   0.0      0.031   14.2   0.0    1.9  1  Terminase_5  Putative ATPase subunit of terminase (gpP-like)
  ------ inclusion threshold ------
      0.014   15.6   0.1      0.065   13.4   0.0    2.1  2  HTH_28       Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   1.3e-21   2.9e-18       1      67 [.       4      71 ..       4      73 .. 0.98
   2 ?   -0.5   0.0      0.61   1.4e+03      12      24 ..     223     235 ..     218     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.3e-21
                EEHHHHHHHHTS-HHHHHHHHHHTT.-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  1 ysigevakilgvtthtlrywekegl.lkpkrteggrryYtdedierLklikyLlkrGltlkgikklln 67
                ysig+va+++g+++ tlr w++++  lkp rtegg+r +++ed++r++ i ++ + G+++ ++k ll+
  EHU01195.1  4 YSIGDVAERCGINPVTLRAWQRRYGlLKPQRTEGGHRQFDEEDVQRIQEIMRWIESGVPVGKVKALLE 71
                9***********************99***************************************997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.61
                 S-HHHHHHHHHHT CS
      MerR_1  12 vtthtlrywekeg 24 
                   + +l +w+++g
  EHU01195.1 223 RQQEQLSHWQEQG 235
                 5678999999988 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.1e-16   2.5e-13       1      38 []       5      42 ..       5      42 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.1e-16
                EHHHHHHHHTTTHHHHHHHHHT.TSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEre.GLipppeRtegGyRlY 38
                +Ig+vAe++G+ p tLR + r+ GL+ +p+RtegG+R +
  EHU01195.1  5 SIGDVAERCGINPVTLRAWQRRyGLL-KPQRTEGGHRQF 42
                7*********************88**.**********76 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0     2e-08   4.4e-05       1      47 [.       3      51 ..       3      55 .. 0.89
   2 ?   -2.9   0.0       3.5   7.9e+03      11      22 ..     128     139 ..     125     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2e-08
      HTH_17  1 lltveEaAelLgvsrstvyrli.rrgelpaak.iGrrwriprsdleewl 47
                l+++ ++Ae  g+ + t++ +  r g l++ +  G+++ ++++d+++  
  EHU01195.1  3 LYSIGDVAERCGINPVTLRAWQrRYGLLKPQRtEGGHRQFDEEDVQRIQ 51
                79*****************76515679****99************9976 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
      HTH_17  11 Lgvsrstvyrli 22 
                 L + ++t++ ++
  EHU01195.1 128 LSLDQNTARTMC 139
                 678899999987 PP

>> MerR_2  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.5e-07   0.00078       3      51 ..       6      56 ..       4      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.5e-07
      MerR_2  3 ieelcertgieeeflieLv.elgliepeiee.eewyfdesqlarlekavRL 51
                i ++ er+gi++  l  ++  +gl++p+++e   ++fde++++r++ ++R+
  EHU01195.1  6 IGDVAERCGINPVTLRAWQrRYGLLKPQRTEgGHRQFDEEDVQRIQEIMRW 56
                678999************8359*****888857889**************7 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.8e-06    0.0041      24      54 ..       4      32 ..       2      64 .. 0.82
   2 ?   -1.6   0.1       1.6   3.6e+03      37      46 ..     225     234 ..     224     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
   HTH_Tnp_1 24 ksvsevArrhgvspnqLykWrrqyregeeas 54
                +s+ +vA+r g++p +L++W r y  g++++
  EHU01195.1  4 YSIGDVAERCGINPVTLRAWQRRY--GLLKP 32
                5789*******************9..44444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
   HTH_Tnp_1  37 pnqLykWrrq 46 
                 ++qL++W  q
  EHU01195.1 225 QEQLSHWQEQ 234
                 68*****876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     9e-06      0.02      18      41 ..       4      27 ..       2      40 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9e-06
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkry 41
                +s+ ++A+++g+++ T++ w +ry
  EHU01195.1  4 YSIGDVAERCGINPVTLRAWQRRY 27
                78999******************9 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-05     0.031      14      38 ..       4      28 ..       2      37 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
  Terminase_5 14 yrvaeIAeelglkeatVysWkkrde 38
                 y++ ++Ae +g+++ t  +W +r++
   EHU01195.1  4 YSIGDVAERCGINPVTLRAWQRRYG 28
                 8999********************7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.9e-05     0.065      14      36 ..       5      27 ..       3      36 .. 0.92
   2 ?   -2.3   0.0       2.2     5e+03       4      16 ..      52      64 ..      51      70 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
      HTH_28 14 svreaArelgisrrtvyrWikry 36
                s+ ++A++ gi++ t++ W +ry
  EHU01195.1  5 SIGDVAERCGINPVTLRAWQRRY 27
                7899******************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
      HTH_28  4 eiikllaaGhsvr 16
                ei++++ +G++v 
  EHU01195.1 52 EIMRWIESGVPVG 64
                7888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2177.49
//
Query:       EHU01196.1  [L=245]
Description: putative membrane component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-26   91.0  12.4    7.3e-26   91.0  12.4    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.7     0.041   7.4e+02      43      62 ..      21      64 ..       4      69 .. 0.46
   2 !   91.0  12.4   4.1e-30   7.3e-26       1     184 [.      70     241 ..      70     242 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.041
  BPD_transp_1 43 f........................vilsilghlilpviillll 62
                  +                        +++  l hl+l v++ ll 
    EHU01196.1 21 AmpysgplfaawfpelarplyqqdsFWQLTLAHLFLVVVASLLA 64
                  13444444444447777777555544444444444443333333 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 4.1e-30
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   g++ G+la +++++ ++ ll ++  +++++P+++++ + +       + g++++p+i++lll+ + +++  + a+l+++p + +e a   G+srwq+
    EHU01196.1  70 GVGCGVLATRRSGRAFRPLLETIAAAGQTIPPVAVLAIAI------PVMGFGAWPAIVALLLYGLLPILQGTLAGLDNVPASSREIAVGVGMSRWQR 160
                   7999************************************......99************************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   +++v l +a+p+ii+g++ ++++++g a++++++g+++ lg++++  ++g++++     +vl ++++v+ll +v d l + l++r++
    EHU01196.1 161 LWQVELALAAPVIIAGMRTSVIINIGTAAIASTVGAKS-LGSPIIIGLSGFNTA-----YVLQGALLVALLAIVCDRLFERLQRRFS 241
                   ***********************************999.***************.....8999999999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1802.05
//
Query:       EHU01197.1  [L=315]
Description: putative ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-33  114.3   0.0    8.1e-33  113.8   0.0    1.2  1  ABC_tran     ABC transporter
    8.1e-07   29.4   0.0    1.9e-06   28.2   0.0    1.7  1  CBS          CBS domain
    1.3e-05   25.2   0.0      0.059   13.2   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.4e-05   24.1   0.0    3.8e-05   23.5   0.0    1.4  1  AAA_30       AAA domain
     0.0035   17.3   0.0      0.006   16.5   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0079   16.5   0.0       0.12   12.6   0.0    2.4  2  AAA_22       AAA domain
     0.0083   15.6   0.2        1.1    8.6   0.2    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
       0.01   15.0   0.0      0.014   14.6   0.0    1.2  1  G-alpha      G-protein alpha subunit
      0.013   15.2   0.1      0.025   14.3   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
      0.015   15.7   0.8      0.044   14.2   0.3    2.1  2  AAA_16       AAA ATPase domain
       0.14   12.7   0.0       0.22   12.1   0.0    1.4  1  AAA_18       AAA domain
       0.14   11.8   0.0        0.2   11.3   0.0    1.2  1  AAA_15       AAA ATPase domain
        0.2   10.9   0.0       0.32   10.2   0.0    1.2  1  Zeta_toxin   Zeta toxin


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   5.9e-36   8.1e-33       1     136 [.      17     162 ..      17     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 5.9e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekal 89 
                 +kn+sl+l eg+  +++G +G+GKSt lk++ +l++ ++G+i+++g+++++ + ++lr+++g+  q + lfp+ t+++n             ++ ++++
  EHU01197.1  17 VKNLSLTLAEGSFSVLLGTSGSGKSTTLKMINRLVEYDQGDIRFRGTSIRQLDAQVLRRQMGYAIQSTGLFPHWTIEKNiatvpallgwPNARRQARIA 115
                 58**************************************************************************************84445556666 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + + l +l++  +++ p++LSgGq+qrv +aral+ +p++ll+DEp+
  EHU01197.1 116 ELMTLLNLDTALLRRYPHQLSGGQQQRVGVARALAADPQVLLMDEPF 162
                 6666666667888888******************************6 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.4e-09   1.9e-06      12      53 ..     265     306 ..     250     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.4e-09
                 EETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS  12 vppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 ++ d tl+eal +++++g + lPVVd+d++++G+++  Dll 
  EHU01197.1 265 LRADLTLREALSQFISRGTDKLPVVDGDHRPLGVLHFADLLH 306
                 67899********99*************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00042      0.57       1      36 [.      29      58 ..      29      76 .. 0.75
   2 !   13.2   0.0   4.3e-05     0.059     232     298 ..     130     194 ..      98     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00042
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdel 36
                + vl G  gsGKS+ L+ +  l      ve ++ + 
  EHU01197.1 29 FSVLLGTSGSGKSTTLKMINRL------VEYDQGDI 58
                689****************777......33333333 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.3e-05
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHS 298
                 + +++lS G+++  +++ al++++    +ll DEp   L+P ++r+ l  e+l++++  g  ++l+TH+
  EHU01197.1 130 RYPHQLSGGQQQRVGVARALAADP---QVLLMDEPFGALDP-VTRSALqqEMLRIHQVSGCTIVLVTHD 194
                 568999***999999999999999...9*************.55555556666777669*********8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.8e-08   3.8e-05      14      79 ..      24      90 ..      10     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.8e-08
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaa.g.grviglAptgkaAkvLaeelgieastiakllkr 79
                l+ +  ++vl G  G+GK+t+lk +++++e + g  r  g +  +  A+vL++++g + +++  + ++
  EHU01197.1 24 LA-EGSFSVLLGTSGSGKSTTLKMINRLVEYDqGdIRFRGTSIRQLDAQVLRRQMGYAIQSTGLFPHW 90
                33.4459*********************9998545888899999********9999755554444433 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.4e-06     0.006      88     128 ..      15      56 ..       3      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.4e-06
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  +++++l+  l++ ++svl+G SG GKSt +++++   e   g
   EHU01197.1  15 AAVKNLSLTLAEgSFSVLLGTSGSGKSTTLKMINRLVEYDQG 56 
                  56788888888879**************87777665555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     9e-05      0.12       5      29 ..      27      51 ..      24      79 .. 0.85
   2 ?    1.1   0.0      0.33   4.5e+02      19      68 ..     125     185 ..     125     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                 ++ v+ G sG+GK+t+l+++ +  
  EHU01197.1 27 GSFSVLLGTSGSGKSTTLKMINRLV 51
                57889**************998764 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.33
      AAA_22  19 Ttllrrlleqldeeakaee.......erpevvfvtlpsst....sskdllrellralglel 68 
                 T llrr+ +ql   ++++        ++p+v++++ p +     +++ l +e+lr+ ++++
  EHU01197.1 125 TALLRRYPHQLSGGQQQRVgvaralaADPQVLLMDEPFGAldpvTRSALQQEMLRIHQVSG 185
                 7788999999876666655888888888888888888887777777777777777766655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00082       1.1      25      45 ..      28      48 ..      15     212 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00082
                SEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAil 45
                sf++++G  GSGKs  l  i 
  EHU01197.1 28 SFSVLLGTSGSGKSTTLKMIN 48
                566666666666665555443 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     1e-05     0.014      27      48 ..      31      52 ..      25     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
                EEEESTTSSHHHHHHHHHHHCS CS
     G-alpha 27 lllGqseSGKsTilkqlkllyk 48
                +llG+s+SGKsT+lk + +l +
  EHU01197.1 31 VLLGTSGSGKSTTLKMINRLVE 52
                59***************98763 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.8e-05     0.025      19      39 ..      24      44 ..      15      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
      AAA_29 19 idlkg.atlltGpsGsGKSTll 39
                +  +g + +l G+sGsGKST l
  EHU01197.1 24 LA-EGsFSVLLGTSGSGKSTTL 44
                44.345899***********87 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   3.2e-05     0.044      25     127 ..      28     181 ..      14     223 .. 0.49
   2 ?   -2.1   0.0       3.1   4.3e+03     117     129 ..     269     281 ..     229     308 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.2e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysalaqalareellrqllde.aesaeleawrekleeala.............. 106
                 +  +l G sG+GKs+ ++++ r +e d  ++ f   + +           +++l++  l rq++ + +++ ++++w  ++e+++a              
  EHU01197.1  28 SFSVLLGTSGSGKSTTLKMINRLVEYDqgDIRF---RGT----------SIRQLDAQVLRRQMGYAiQSTGLFPHW--TIEKNIAtvpallgwpnarrq 111
                 556899***************988887432222...111..........223333322222222221111122222..122222222333333322222 PP

      AAA_16 107 .................................................avpelagaeasrllellkrll 127
                                                                  + ++l++  +s+l +++ r+ 
  EHU01197.1 112 ariaelmtllnldtallrryphqlsggqqqrvgvaralaadpqvllmdePFGALDPVTRSALQQEMLRIH 181
                 2222222233333333333334444444444444445555555555555555555555555555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
      AAA_16 117 srllellkrllal 129
                   l+e+l++++++
  EHU01197.1 269 LTLREALSQFISR 281
                 3344444444433 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.22       3      25 ..      32      62 ..      31     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
      AAA_18  3 ltGtpGvGKttlakeLskrlgf........g 25
                l Gt+G+GK+t  k ++++ ++        g
  EHU01197.1 32 LLGTSGSGKSTTLKMINRLVEYdqgdirfrG 62
                89**************888666665555443 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015       0.2      15      48 ..      18      52 ..      16      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFln 48
                k+ ++ l e  ++vl G+ +sGKS+ l++++ + +
  EHU01197.1 18 KNLSLTLAEGsFSVLLGTSGSGKSTTLKMINRLVE 52
                566666777679******************98865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024      0.32      20      57 ..      31      68 ..      26      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
  Zeta_toxin 20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57
                +l G +G+GKs++++++++ +e +++ +r+ ++++R+l
  EHU01197.1 31 VLLGTSGSGKSTTLKMINRLVEYDQGDIRFRGTSIRQL 68
                466899*************9998899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2225.82
//
Query:       EHU01198.1  [L=376]
Description: putative membrane component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-20   71.0  18.3    9.9e-20   71.0  18.3    2.8  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   5.6     0.074   1.3e+03      21      65 ..       7      56 ..       2      65 .. 0.72
   2 ?   -0.0   0.2     0.035   6.3e+02      36      63 ..     138     191 ..     128     197 .. 0.52
   3 !   71.0  18.3   5.5e-24   9.9e-20       2     180 ..     188     372 ..     183     374 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.074
  BPD_transp_1 21 rpliivllslPsfvlaillvlvf......vilsilghlilp.viillllsaa 65
                  + l+ vl +lP++++a   +  +       ++++ g+l+lp +++l++l ++
    EHU01198.1  7 LLLSLVLGGLPFVIVAANRL--VsgqslmLWQTAHGSLVLPlWLMLVALLWI 56
                  44555666667666666633..03466667999999*****99999999997 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.035
  BPD_transp_1  36 aillvlvf.........................vilsilghlilp.viilllls 63 
                   +i+l+l+f                          +l+ l  ++lp ++i+l l+
    EHU01198.1 138 IIPLFLLFsgqlsqlsllkeyasreavfdaallRHLTLLVGTVLPaLLIALPLG 191
                   333333445666666666666666666555555444444444444344444444 PP

  == domain 3  score: 71.0 bits;  conditional E-value: 5.5e-24
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaar 88 
                   ++lGi +  +r+  ++  + ++ +v++++Ps++l+ ll++ +            ++i g ++ p+ii+l+++a+ + ++++  +l+++p d +e+ar
    EHU01198.1 188 LPLGIAL--YRRPGWQSSVFGVLNVVQTVPSVALFGLLIAPLaalakrvplaGEWGISGIGMAPAIIALVFYALLPLVRNVVTGLQQVPPDVRETAR 282
                   4444444..4666777788899999********999999999999*******999999*************************************** PP

  BPD_transp_1  89 alGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlld 180
                    +G+sr+q f  v +P+alp++++gl+++++  lg av++ ++g++ G+g  +++ +l++ +++ +  gv+ ++++ ++l ++++++ +ll+
    EHU01198.1 283 GMGLSRRQQFLAVDVPLALPVWLAGLRVVVVQTLGMAVIAALIGAG-GFGAIIFQGLLSNALDLVL-LGVIPVIALAVVLDALFRVVIALLE 372
                   ********************************************76.7***************777.6666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2693.07
//
Query:       EHU01199.1  [L=303]
Description: putative transport system permease protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-58  198.9   6.1    1.2e-58  198.8   6.1    1.0  1  OpuAC     Substrate binding domain of ABC-type glycine betain


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.8   6.1   6.5e-63   1.2e-58       2     257 .]      25     299 ..      24     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 198.8 bits;  conditional E-value: 6.5e-63
                 EEEEEEESSHHHHHHHHHHHHHHHHTTE.EEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHH..................HHHHHHHHHHHHEEEEEEE CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGy.kveltnlgstavlfaalasGdiDvypeewtgta..................yeaykkaveekkglevlgp 81 
                 ++++gsk  te+ +l++++  +lek+G+ +v++ +lg+t+v++ a++ G++D+yp e+tg+                   ye++kk ++ek++l +l p
  EHU01199.1  25 PVRVGSKIDTEGSLLGNVILLVLEKHGVkTVNKIQLGATQVVRGAITAGELDIYP-EYTGNGasffndekdsawknarqgYEKVKKLDAEKNHLIWLTP 122
                 89*****************************************************.******************************************* PP

                 ESEEECEEEEEEHHHHHHHTTTBHHHHCTHHG...GTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-T.TCEEE.GSCEEEEHH..HHHHHHHTTC.SS CS
       OpuAC  82 lgagnteglavpkyvaekygiksisDLkkpae...dlelgakgeflgrpdgwgcekvtegllkaYgld.kvelv.egseaamda..elyaaykrge.pv 172
                 ++a+nt+++av+ +vaek++++s++DL+++ +   +++l+a++ef++r+d ++      ++ kaY+++ k  ++ +  + +  +  ++ aa+++ + ++
  EHU01199.1 123 APANNTWTIAVRNDVAEKNQLNSLQDLSAYLKkggTFKLAASAEFIERSDALP------AFEKAYDFTlKQDQLlSLAGGD--TavTIGAAAQQTSgVN 213
                 ******************************999********************......********66666663444444..355**********9** PP

                 EEEEETTSTHHHHTTEEE-B-TTSTS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC..--HHHHHHHHHHHHTTTT-HHHHHHHHHHH CS
       OpuAC 173 vvyawtPdwaikkydlvvLedpkglfppaynvvpvvrkefaekaPevaafLekls..ldtetlnelnaqvdvegkdpeevAkawlae 257
                 +++a+ +d+ +++++l+ L+dpkg++p  y  +pvvr+++++++P++ a+L++    ld++tl++lna+++veg+d+  vAkawl++
  EHU01199.1 214 AAMAYGTDGPVAALGLKTLSDPKGVQPI-YAPTPVVREAVLKAYPQMDAWLKPAFsaLDEKTLQQLNAKIAVEGQDASSVAKAWLQQ 299
                 ****************************.************************989*****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2329.45
//
Query:       EHU01200.1  [L=177]
Description: isopentenyl-diphosphate delta-isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-21   74.4   0.0      1e-20   74.1   0.0    1.1  1  NUDIX        NUDIX domain
  ------ inclusion threshold ------
      0.041   13.8   0.0       0.44   10.5   0.0    2.6  2  Homeobox_KN  Homeobox KN domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   1.2e-24     1e-20       2     131 .]      30     159 ..      29     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 1.2e-24
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE...EEEEEEEEEEEEC CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd...eheilyvfleeve 93 
                 l+rav v+++n ++e+Ll+rr+  k+++ g W+ +++G+  p E+ ++AA R+l+EE G +  l+ +++ l y    + p  +   ehe+ +vf++  +
  EHU01200.1  30 LHRAVTVYVFNARQELLLQRRAsdKYHCGGlWSnTCCGHPYPHESTKDAAERRLREEMGMTLSLTPIFE-LSY----NLPLSNgltEHEYGHVFFAVSD 123
                 79*********************9999999**88**********999************8776666666.444....444444556*********8888 PP

                 SGCSSTSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHHH CS
       NUDIX  94 gelepndenevsevrwvpleellkeklaaesrkllpwl 131
                 + +++n + e +++ + +++++ + +++++  +++pw+
  EHU01200.1 124 ELPQLN-PQEADAFDYRSMQDI-ARQMQQQPQQFTPWF 159
                 888888.***************.9999*********98 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.52   4.7e+03      27      38 ..      31      42 ..      24      43 .. 0.73
   2 ?   10.5   0.0   4.9e-05      0.44       6      34 ..      66     159 ..      61     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.52
  Homeobox_KN 27 vkqitnWFINaR 38
                  + +t +  NaR
   EHU01200.1 31 HRAVTVYVFNAR 42
                 566888889999 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 4.9e-05
  Homeobox_KN   6 lhnPYPseedK.................................................................eeLlkeTglsvkqitnWF 34 
                  +++PYP e  K                                                                 + ++++ +++ +q t WF
   EHU01200.1  66 CGHPYPHESTKdaaerrlreemgmtlsltpifelsynlplsnglteheyghvffavsdelpqlnpqeadafdyrsmQDIARQMQQQPQQFTPWF 159
                  68*********99998888888888888888888888888888888888888888888888888888888888888888888888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1517.02
//
Query:       EHU01201.1  [L=632]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-51  172.3  19.6    7.9e-51  172.3  19.6    3.7  3  MCPsignal    Methyl-accepting chemotaxis protein (MCP) signal
    1.1e-27   97.4   0.0    1.1e-27   97.4   0.0    3.0  4  dCache_1     Cache domain
    2.2e-08   34.3   0.3    1.2e-06   28.8   0.0    3.3  2  HAMP         HAMP domain
  ------ inclusion threshold ------
       0.01   15.5   0.6      0.019   14.7   0.1    1.7  2  Afaf         Acrosome formation-associated factor
      0.018   14.0   0.0      0.037   13.0   0.0    1.4  1  DUF4788      Domain of unknown function (DUF4788)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.5    0.0016       5.8      19      54 ..      54      89 ..      41      92 .. 0.90
   2 ?    3.8   1.3     0.013        45     123     169 ..     382     428 ..     358     444 .. 0.65
   3 !  172.3  19.6   2.2e-54   7.9e-51       2     171 ..     443     598 ..     442     599 .. 0.98

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0016
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 19 anvvkqmeeieksskeisdiieVideiadQTNlLAL 54
                  +v+qm+ ++ + + i++  +Vid+ a  T l AL
  EHU01201.1 54 TGIVEQMNRVQAQQRAITEAAAVIDSAAIDTLLPAL 89
                5689************************99988777 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.013
                 HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 123 veetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveeva 169
                 +++ g +   i++a  e+a+  +++++ +e q++si e++ ++e+++
  EHU01201.1 382 MQQVGGSALAISAASREIASGNTNLSSRTEGQASSIVETAASMEQLT 428
                 44444444556666677777777777777777777777777776654 PP

  == domain 3  score: 172.3 bits;  conditional E-value: 2.2e-54
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                 +la eas+ A +g ++v +vv++m ei++ss+++ dii+Vid+ia+QTN+LALNAa+EAA AGeqGrGFaVVA+EVr+LA+rsa++a+ei++li     
  EHU01201.1 443 QLAGEASQVAARGTEVVRQVVSTMGEIHHSSRKVVDIISVIDSIAFQTNILALNAAVEAASAGEQGRGFAVVASEVRNLAQRSANSAREIKKLI----- 536
                 67899*****************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakv 171
                          ee++ +++ gs+lve++g+++ e+v+ v++v++l++ei aas eqs +i++vn a++++++ 
  EHU01201.1 537 ---------EESVANIDAGSQLVEQAGQTMDELVQGVSSVTTLMSEIMAASREQSMGIDQVNVAINQLDST 598
                 .........9*********************************************************9976 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   3.1e-31   1.1e-27       7     249 .]      45     292 ..      42     292 .. 0.91
   2 ?   -0.4   0.2      0.22   7.9e+02      17      46 ..     366     395 ..     335     445 .. 0.75
   3 ?   -1.0   0.4      0.35   1.3e+03       9      38 ..     523     552 ..     515     597 .. 0.59
   4 ?   -1.9   0.1      0.63   2.3e+03     135     168 ..     566     600 ..     547     610 .. 0.63

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 3.1e-31
    dCache_1   7 aeeqllglaeqlanniedvldslenlaetlasnpslqdlleepnraneasreslqallksilksn.................pdisgvylvdadGqvia 88 
                 ++ q+++la+++ +++++v +++++++e  a   s             a++  l al++++++sn                 ++ s+++  da++++ +
  EHU01201.1  45 IRYQVDSLATGIVEQMNRVQAQQRAITEAAAVIDS------------AAIDTLLPALVNQYQDSNvfgggiwplpnrreagkEKDSSFFARDASNKLQV 131
                 57899*******************99999988544............579999************************999999999***********97 PP

    dCache_1  89 ssdpssppnlegtddpadrdwykealaggggkpvisdpyvdqtggkpvitiavpiyddsgkfiGvlaadldldnlqdllsniklgetgyvfivdsdGni 187
                  +++++ +     d++++++wyk+ +a+++g+  + ++y+d+++++p + +a++iy d g ++Gv ++d++l ++++l +++ +  +g v+iv+sdG++
  EHU01201.1 132 -NTYWNSEAA---DKYWEQPWYKDGMASPKGQCAWAKAYQDAASPQPRTNCAMAIYRD-GSVWGVSTIDVTLGFFNQLAKKMGEAIHGDVLIVESDGKV 225
                 .889987776...8****************9999*******9999***********86.**************************************** PP

    dCache_1 188 iahpd....kdllgknlrdelkaq...ealekalakiesgvssvklngeeylvayapiptglgWylvvv 249
                 + +      +++l +nl+d ++++    +   a a++++  +++ +++ e+++  ++ip+ ++Wyl+++
  EHU01201.1 226 VGNAAlangTPKL-ENLSDLQNPMagpLKTLLAHAGTQPTETTYNSHDGEQTLFLQAIPG-SPWYLASS 292
                 ***5544457776.8999999999*99555555569***************999*****6.*****985 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.22
    dCache_1  17 qlanniedvldslenlaetlasnpslqdll 46 
                  +a+++++++ +l+ l+++++ +  + +++
  EHU01201.1 366 AVAQSFNNFISYLQGLMQQVGGSALAISAA 395
                 567888888888888888887765544433 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.35
    dCache_1   9 eqllglaeqlanniedvldslenlaetlas 38 
                 + + ++a+++++ ie+ ++++++ ++++ +
  EHU01201.1 523 QRSANSAREIKKLIEESVANIDAGSQLVEQ 552
                 666677777777777777777754444422 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.63
    dCache_1 135 pvitiavpiyddsg.kfiGvlaadldldnlqdlls 168
                 +v+t+++ i+ +s+ +  G+ ++++ +++l+++ +
  EHU01201.1 566 SVTTLMSEIMAASReQSMGIDQVNVAINQLDSTTQ 600
                 56777777777443266666666666666666555 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.4e-10   1.2e-06       2      52 ..     327     379 ..     326     380 .. 0.95
   2 ?    1.7   0.1     0.098   3.5e+02      13      28 ..     392     409 ..     391     437 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.4e-10
                 HHHTTHHHHHHHHHHHHHHTTT..BTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaG..dldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 ++r+++++Lr L + +++++ G  dl++rlp s   E+ ++a++fN+++  L+
  EHU01201.1 327 FVRAMMKRLRMLNQNIEALSTGgaDLTQRLPASNSPEFNAVAQSFNNFISYLQ 379
                 689******************99************************998776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.098
                 HHHHHHHHTTT..BTSST CS
        HAMP  13 LaraarriaaG..dldtr 28 
                 +++a r+ia+G  +l++r
  EHU01201.1 392 ISAASREIASGntNLSSR 409
                 68999******6666655 PP

>> Afaf  Acrosome formation-associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   5.3e-06     0.019      92     162 ..     266     341 ..     239     347 .. 0.73
   2 ?   -3.0   0.1       1.4   5.2e+03      62     111 ..     547     596 ..     518     610 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.3e-06
        Afaf  92 etaveed.ekdqlfqpiPssDvnatn..edklseleeiklklmLGisL..ltLlLfviLLalcsatlyklkklsyk 162
                  t +++d e+  + q+iP s    ++     l +++   + + LG+    l+++L+++LL +  a++ +l++l+++
  EHU01201.1 266 TTYNSHDgEQTLFLQAIPGSPWYLASsvPSSLLKAQSHNMLMRLGLVQipLAVILLLVLLGFVRAMMKRLRMLNQN 341
                 233455534455669*****876666225677788888888888987622567999*****************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
        Afaf  62 ektkeksrkniqkstpnvPafWtmlakalnetaveedekdqlfqpiPssD 111
                  +  e++ +++ +  + v    t+++  + ++ ++    dq+  +i + D
  EHU01201.1 547 SQLVEQAGQTMDELVQGVSSVTTLMSEIMAASREQSMGIDQVNVAINQLD 596
                 34445555555555566666666666666666666666666666665544 PP

>> DUF4788  Domain of unknown function (DUF4788)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.037      67     117 ..     180     230 ..     178     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
     DUF4788  67 vtvryngkvlGtgtlsfpqefidkiekemsdllhadtcdleregevvgtle 117
                 ++++ +g+v G  t++++  f ++++k+m + +h d + +e +g+vvg+  
  EHU01201.1 180 MAIYRDGSVWGVSTIDVTLGFFNQLAKKMGEAIHGDVLIVESDGKVVGNAA 230
                 78999*******************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1457  (0.081265); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4362.14
//
Query:       EHU01202.1  [L=368]
Description: hypothetical protein CKS_3942 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-21   76.7   0.1    3.3e-21   76.0   0.1    1.2  1  SUFU      Suppressor of fused protein (SUFU)


Domain annotation for each model (and alignments):
>> SUFU  Suppressor of fused protein (SUFU)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.1   1.8e-25   3.3e-21      15     170 ..     209     361 ..     197     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.8e-25
        SUFU  15 pghwhyvTlGlsdlpmdepeeaea.dpesgpraELvlrlrkdeesvareeptwparlLqvlArypfeeggtwlgpghtipnndplplaentkleglllv 112
                 +g+w++ TlG+s +pm+  +++ +   +++ raEL ++++++   + + + + +a+ L+ + ++p+    twlg+ght++++ + p      +e+ ll+
  EHU01202.1 209 NGIWYFLTLGMSIRPMPQVDFLFDeLAPHYRRAELGMAVDGE--VMTESNAVQMASALAEFVHLPWA-RLTWLGEGHTLASE-VAP----VGFESYLLA 299
                 69***************9999988877789**********74..344467889**************.6**********444.555....789****** PP

        SUFU 113 ep..ddeeltaietpggkeVrflqlvpiteeElefarek..gadalleelkeegeldvtdpn 170
                 +    +++ + +   +g++ ++l+++p+te+E++fa+++  g+++l+e+l+++g+++++ p+
  EHU01202.1 300 NElaPESAQFVLPRRDGDRPTLLWATPVTEAERQFAQAEpqGGQQLRERLSAGGNTHIFRPR 361
                 9986333344677778888***************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2890.71
//
Query:       EHU01203.1  [L=765]
Description: beta-D-glucoside glucohydrolase, periplasmic [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-95  319.1   0.0    5.4e-95  318.4   0.0    1.3  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    2.9e-60  203.7   0.1    4.9e-60  203.0   0.1    1.4  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    7.7e-23   80.4   0.0    1.5e-22   79.4   0.0    1.5  1  Fn3-like         Fibronectin type III-like domain
  ------ inclusion threshold ------
       0.01   15.0   0.1      0.021   13.9   0.1    1.5  1  Sugar-bind       Putative sugar-binding domain
       0.19   12.1   1.4       0.43   11.0   1.4    1.6  1  Alanine_zipper   Alanine-zipper, major outer membrane lipopro


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.4   0.0   1.5e-98   5.4e-95       1     319 []      46     352 ..      46     352 .. 0.99

  Alignments for each domain:
  == domain 1  score: 318.4 bits;  conditional E-value: 1.5e-98
                    -HHHHHHHTEE-B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS---S-HHHHHH CS
  Glyco_hydro_3   1 tldekigqLlvvevseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegtlfPsalalaa 96 
                    tldekigqL++++v+++ ++e+++e+++k qvG+i++       t++  +++++++q ++ srl+iPl++a+D+++G++      t+fP++lala+
     EHU01203.1  46 TLDEKIGQLRLISVGPDTPKEAVREMIHKGQVGAIFN-------TVTRPDIRAMQDQVMQLSRLKIPLFFAYDVVHGQR------TIFPIPLALAS 128
                    79***********************************.......7**********************************......*********** PP

                    HT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT......T-EEEEEEETTGTT-SSETTTSE CS
  Glyco_hydro_3  97 tssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga......gvaatvKHFpghGdgavdshkel 186
                    +++ld++ke+gri+a+e++++g+++++aP+vdv+r+pr+g+ +++F+ed++l++ ++++mvk++qg+      +++++vKHF+ +  gav++++++
     EHU01203.1 129 SWDLDAVKEVGRISAYEAADDGLNMTWAPMVDVSREPRWGRVSEGFGEDTYLTSEMGRTMVKAMQGKspadryNIMTSVKHFALY--GAVEGGRDY 222
                    *************************************************************************************..9******** PP

                    EB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-...HHHHHHHHHHHT- CS
  Glyco_hydro_3 187 ptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrgg...keeavvlaLkAGv 279
                    +tvd+s +++++++l p++a ++ag + VM+a   +++++g+pat++++ll+d+LR ++ F+G+++sD+ a+ke++++g    +++av+ aLk+Gv
     EHU01203.1 223 NTVDMSPQRMFQDYLPPYKASLDAGSGGVMVA---LNSINGVPATADSWLLKDLLRRDWKFKGITISDHGAIKELIKHGVasdPQDAVRIALKSGV 315
                    ********************************...********************************************99999************ PP

                    SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHHH CS
  Glyco_hydro_3 280 DilLvpeertseikalkkavkeGeltearidesvrrvlrl 319
                    D+++ +e+++   k+l ++vk G +++a+id+++r+vl++
     EHU01203.1 316 DMSMSDEYYS---KYLPDLVKRGIVSRAEIDDAARHVLNV 352
                    *********8...************************985 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.1   1.4e-63   4.9e-60       1     204 []     395     648 ..     395     648 .. 0.95

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 1.4e-63
                      -EEEEEGSS--S-S-STEEEEEESGGGS.SS-SS-BSSS----S---HHHHHHHHHHH.................................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................... RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad.etlklGggsgtvtvsylvsplegirerles................................... 58 
                      +VLLkN  n+LPLkk+  +ia+iGp ad ++  +G +s++   ++ vs+l+g++++++                                    
       EHU01203.1 395 MVLLKNRLNTLPLKKS-GTIALIGPLADsQRDIMGSWSAAGVAKQSVSLLQGMQNATQGkatllyakgsnvsdnkgiqdflnmyepaivvdprs 487
                      8************666.5**********88899********99999***********779********************************** PP

                      ..-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHH CS
                      .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  59 .eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeenvkAilaawlpGqegGta 151
                       +++ideave+ak+aDv+v++vge + ++ E + r+dl +p+aq++l++a++a++k+ v+vl++g+p+a+ ++ +  ++A+l++w+ G+egG+a
       EHU01203.1 488 aQAMIDEAVEKAKQADVVVAAVGEAQGMAHEASSRSDLMIPPAQQKLLAALKATGKPLVIVLMNGRPLALVNE-DRMADAMLETWFSGTEGGNA 580
                      **********************************************************************888.88****************** PP

                      HHHHHTTSS---B--SS-EESSSGGG...........................S-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.............xxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 152 iadvLfGdvnPsGkLpvtfpksledlpddyyeek...dt.............ykfegtplYpeGlglsY 204
                      iadvLfGd+nPsGkLp++fp+s++++p  yy++    ++             y+ e++plYp+G+glsY
       EHU01203.1 581 IADVLFGDYNPSGKLPISFPRSVGQIPI-YYNHLptgRPynfakpnkytshyYDAENGPLYPFGYGLSY 648
                      **************************99.8887765522667888999999677**************9 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   4.3e-26   1.5e-22       2      71 .]     686     754 ..     685     754 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 4.3e-26
                 EEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESSS CS
    Fn3-like   2 vvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgtss 71 
                 vvqlY+ dp +s++rpvkeL gF+++ L++Ges++vtf++d+++l +w+++ +k v+epG++ v++g +s
  EHU01203.1 686 VVQLYLNDPVASMSRPVKELHGFKRIMLKAGESQKVTFRIDVDALKFWNQQ-MKHVAEPGKFNVMIGLDS 754
                 9**************************************************.688***********9765 PP

>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1     6e-06     0.021     125     183 ..     487     543 ..     472     570 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-06
                 HHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCC...CCHHHCCTTS-HHHHHHHHHTTEEEE CS
  Sugar-bind 125 lreallaersikevlelakkadvalvGiGsase...eaklvkrgflteeelaelreegaVGe 183
                       a+ +i e++e+ak+adv++  +G+a+    ea+   + ++ +++++ l++ +a G+
  EHU01203.1 487 S-----AQAMIDEAVEKAKQADVVVAAVGEAQGmahEASSRSDLMIPPAQQKLLAALKATGK 543
                 4.....6788999*****************99855455666677999999999999999886 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   0.00012      0.43      18      68 ..     486     532 ..     480     533 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  Alanine_zipper  18 aaaksaadeAkskAdeAaarAenAeaaAeeAqkaAeeaneradrmFeksmr 68 
                     ++a+++ deA +kA++A   ++    a  eAq +A ea++r d m   +++
      EHU01203.1 486 RSAQAMIDEAVEKAKQADVVVA----AVGEAQGMAHEASSRSDLMIPPAQQ 532
                     6788888888888888886555....7889999999999999998766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 6124.94
//
Query:       EHU01204.1  [L=567]
Description: D-lactate dehydrogenase, FAD-binding, NADH independent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.1e-144  479.0   0.3   6.2e-144  478.7   0.3    1.1  1  Lact-deh-memb  D-lactate dehydrogenase, membrane binding
    2.1e-07   30.7   0.0    3.9e-07   29.9   0.0    1.4  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
       0.19   10.5   0.1       0.32    9.8   0.1    1.2  1  Herpes_glycop  Herpesvirus glycoprotein M


Domain annotation for each model (and alignments):
>> Lact-deh-memb  D-lactate dehydrogenase, membrane binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.7   0.3    1e-147  6.2e-144       1     290 []     273     562 ..     273     562 .. 1.00

  Alignments for each domain:
  == domain 1  score: 478.7 bits;  conditional E-value: 1e-147
  Lact-deh-memb   1 vfyigtndaeeltelRreiLsefkelPvsgEYlhrdafdiaekygkdtflaikklgtdrlpklfalkakvdalleklsflpkklsdrllqalskll 96 
                    vfyigt da++l++lR ++L++fk+lPv++EY+hrd++diae ygkdtfl+i+klgtd++p +f+lk ++d++l+klsf++ +l+drllq ls+l+
     EHU01204.1 273 VFYIGTSDAAVLSDLRCHMLAHFKNLPVAAEYMHRDIYDIAEVYGKDTFLMIDKLGTDKMPLFFTLKGRADGWLNKLSFIKPHLTDRLLQRLSRLF 368
                    8*********************************************************************************************** PP

  Lact-deh-memb  97 PshlpkrlkeyrdryehhlllkvseegieearayLeelfkeaegeffectaeegkkaflhRfaaagaairyravhekevedivalDiALrrndkdW 192
                    P hlpkr+k+yrd+y+hhl+lk+s+eg+eear+yL+e+f+e  geffec+ +eg++aflhRfaaagaa+ry+avh++evedi+alDiALrrnd+dW
     EHU01204.1 369 PAHLPKRMKQYRDKYQHHLMLKMSGEGVEEARNYLREFFREGGGEFFECEGKEGAHAFLHRFAAAGAAVRYHAVHATEVEDILALDIALRRNDRDW 464
                    ************************************************************************************************ PP

  Lact-deh-memb 193 letlPeeieekllkklyygHflChVfhqdyivkkGvdakalkeellelldargaeyPaEHnvGhlYkakpelkkfyrklDPtNsfNpGiGktskkk 288
                    +etlP+ i+++l+++lyygHf+ChVfhqdyivkkGvd++alk+++l++l++rgaeyPaEHnvGhlY+a+p+l++fyr+lDPtNsfNpGiGktsk k
     EHU01204.1 465 FETLPAGITQSLSHQLYYGHFFCHVFHQDYIVKKGVDVHALKAQMLAILKTRGAEYPAEHNVGHLYQAQPQLAAFYRQLDPTNSFNPGIGKTSKLK 560
                    ***********************************************************************************************9 PP

  Lact-deh-memb 289 kw 290
                     w
     EHU01204.1 561 GW 562
                    99 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.5e-11   3.9e-07       2     113 ..      42     159 ..      41     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 6.5e-11
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC......SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSG CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav......atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllgle 91 
                     avv+p++  e+ ++l+   +a++ +l++++ ++l+ +++       +  v++++ +l+++  id+ ++++ + +G tl +l++ l++ g+     
     EHU01204.1  42 LAVVFPATLLELWRVLQTLVAADAIILMQAANTGLTEGSTpqgddyDRPLVIISTLKLDKLQLIDK-GRQVLAFPGSTLYQLEKILKPLGREPHSV 136
                    68**********************************777755554444449999999***877775.*******************9999999876 PP

                    .GGTTCGSBHHHTTTTT-EETTE CS
  FAD_binding_4  92 .pgsgipgtvGGaiatnagGygs 113
                      +s+i ++v G i +n+gG+  
     EHU01204.1 137 iGSSCIGASVLGGICNNSGGSLI 159
                    56777777999999999998554 PP

>> Herpes_glycop  Herpesvirus glycoprotein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   5.3e-05      0.32     152     186 ..     475     509 ..     473     522 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.3e-05
  Herpes_glycop 152 tlaavvyvlhFlasvvfalsfvtrgkssetyaeqk 186
                    +l++ +y +hF++ v+++ ++v +g++ +  ++q 
     EHU01204.1 475 SLSHQLYYGHFFCHVFHQDYIVKKGVDVHALKAQM 509
                    699***********************998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3964.49
//
Query:       EHU01205.1  [L=817]
Description: potassium efflux system protein/small-conductance mechanosensitive channel [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-40  138.2   8.0    3.1e-40  137.9   5.4    2.4  2  MS_channel      Mechanosensitive ion channel
    3.3e-19   68.4   0.9    9.7e-19   66.9   0.1    2.3  2  DUF3772         Protein of unknown function (DUF3772)
     0.0022   17.4   0.8     0.0022   17.4   0.8    2.1  2  Zn_peptidase_2  Putative neutral zinc metallopeptidase


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.19   1.1e+03     113     153 ..      50     101 ..      46     141 .. 0.61
   2 !  137.9   5.4   5.2e-44   3.1e-40       3     204 ..     590     786 ..     588     788 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.19
                 SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-T...........T CS
  MS_channel 113 sgtrrikvsigvtyssdvkklekvleelkealkekpevlk...........d 153
                 +++  +k++ +v ++sd +kl+++ e+ +e   ++ ++ +           +
  EHU01205.1  50 MQKILDKIKSQVSVESDENKLSRLNEMALELSGNTDTLAQalqpdrqqleaQ 101
                 5566678888888899966666666665555555555555555554444440 PP

  == domain 2  score: 137.9 bits;  conditional E-value: 5.2e-44
                 HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnssl 101
                 +++ + +v++il++ls +g ++++l +++ al++++g++l+++++n+++G+ill+e+p+k+GDlv+i+++eG ++ i+ r+t i+  d+++v++Pns++
  EHU01205.1 590 LFSNVGYVLIILLTLSIMGLQWNKLAWIVSALSVGIGFGLQEIVKNFISGLILLTERPVKVGDLVTISGVEGDIRRINVRATEIQLGDKSTVIVPNSQF 688
                 5677889******************************************************************************************** PP

                 HTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHH CS
  MS_channel 102 vtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkile 200
                 +++n++N ++++ +  ++++ +++++ d   + +v+e+l+++ +e++++l+ +e+ v +++++++++ + v+  v +   +++   +s++   i   l+
  EHU01205.1 689 ISQNVRNATMGNAQGVVTITLTFPLNID---PVQVREILLKVYEENERILETPEPSVSFKDLTAQGIVLSVTGNVAS--QRQIAGAKSDLLFDILTRLR 782
                 **********888888888888888888...****************************************999999..899999**********9999 PP

                 HHT- CS
  MS_channel 201 eegi 204
                 +egi
  EHU01205.1 783 KEGI 786
                 9999 PP

>> DUF3772  Protein of unknown function (DUF3772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.43   2.6e+03      23      31 ..      95     103 ..      84     109 .. 0.54
   2 !   66.9   0.1   1.6e-22   9.7e-19       1      62 [.     139     200 ..     139     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.43
     DUF3772  23 RerftaqLl 31 
                 R+++ aqL+
  EHU01205.1  95 RQQLEAQLA 103
                 555555555 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 1.6e-22
     DUF3772   1 lkqArllkvrAdqLsdqIsklRRerftaqLleRspSpLsPafWsplaaelpedlrrlqalva 62 
                 +kqA+ +k +A  Ls qI++lRR+++++ L+++s+S+L+P+fW+p++++++ d+++++++++
  EHU01205.1 139 IKQAEGIKNSALMLSSQIVNLRRDQLKNKLALNSGSILGPRFWAPVLSSQDLDAEKIGDFLN 200
                 79*********************************************************986 PP

>> Zn_peptidase_2  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.8   3.7e-07    0.0022     105     204 ..     400     508 ..     395     515 .. 0.88
   2 ?   -2.9   1.0      0.63   3.8e+03     115     144 ..     585     617 ..     582     629 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.7e-07
  Zn_peptidase_2 105 yaplklrsalvpvvnigsklslillliglllslss.......lllligiilfalavlfqlvtLPvE..fdASkrAlkiLeeegilseeelkgakk 190
                      +p + rs+lv +++++ +++++ +l++l++ + +       +l++ gi++ ++ +l +lv    E  f  S+ + k ++++  ++e+ l+++ +
      EHU01205.1 400 GTPPEARSTLVGLIQMALTITALTILASLVIGYVTlarflsyELVWCGILFGSFYILSHLVNDSCEslFSISNTTGKRIQSSLNIDERHLQQVAT 494
                     567789*********************9999776677888866***********************778889*********************** PP

  Zn_peptidase_2 191 vLkaaAlTYVaaal 204
                     +L a   T+++ ++
      EHU01205.1 495 ILAAIGKTFLVLFV 508
                     ********987554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.63
  Zn_peptidase_2 115 vpvvnigsklslillliglllslss...lllli 144
                     v++v + s+++++l+++  l ++     +l++i
      EHU01205.1 585 VSLVTLFSNVGYVLIILLTLSIMGLqwnKLAWI 617
                     567788888888888776444222223334443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 5848.19
//
Query:       EHU01206.1  [L=315]
Description: D-alanyl-D-alanine endopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-75  253.2   0.2    2.6e-75  252.9   0.2    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    1.4e-08   34.6   0.1    1.8e-08   34.2   0.1    1.3  1  Beta-lactamase2  Beta-lactamase enzyme family
     0.0065   15.8   0.1       0.05   12.9   0.0    2.1  2  Beta-lactamase   Beta-lactamase
  ------ inclusion threshold ------
      0.022   13.5   0.5       0.55    8.9   0.1    2.1  2  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.9   0.2   5.9e-79   2.6e-75       6     240 ..      38     265 ..      32     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 252.9 bits;  conditional E-value: 5.9e-79
                    ---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHH CS
  Peptidase_S11   6 sepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegll 101
                    ++p +ia++sa++vd++ GkvL + ++d v++iAS+tKlmTa++vl+a   ++++e  kv+is++++++g    v++++   +s++s++ +l ++l
     EHU01206.1  38 AQP-QIASGSALIVDLTNGKVLFSSHPDRVRPIASITKLMTAMVVLDAH--QPMNEMVKVDISQTPEMRG----VFSRVK-LNSEISLRSMLMLAL 125
                    456.9********************************************..*******************....777766.7999*********** PP

                    CC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHH.HHHHHHGGGESEEEET.TECTEEEESS CS
  Peptidase_S11 102 vssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkd.lpeelkitkeksltfn.gikklnyknk 195
                    +ss+N+Aa++lA+ ++G+++aF+ +Mn+ka++lG+  t++v+ptGL+ +n vssA+dl  l+ka +++ l+ el++tke++++f+ + + l ++n+
     EHU01206.1 126 MSSENRAAASLAHAYPGGYDAFIRAMNAKARALGMMHTHYVEPTGLSIKN-VSSAQDLVKLLKATREYpLLGELRTTKEETAVFAhPSYALPFRNT 220
                    **************************************************.**********************************99********* PP

                    TGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 196 nkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    n+l+y++++ ++++ktGyt++Ag+clv+++ +++ ++++ vl+a+
     EHU01206.1 221 NHLVYKNGWHIQLTKTGYTDQAGHCLVMRTMIKNRPVALMVLDAF 265
                    *******************************************97 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   4.1e-12   1.8e-08       2     148 ..      53     197 ..      52     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.1e-12
                      TTTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGGGST.TSEEEHHHHHHHHHHTT-HHHHHHHHHHH.. CS
  Beta-lactamase2   2 dtgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaedivggsgilqklp.gktlslrdlltlmiavSDNtAtnlLidrl.. 91 
                      ++g++l +  +d++ p aS+ K++ +      vl+     +e +++  ++  + +g++++ + ++++slr +l l++  S N A+  L      
       EHU01206.1  53 TNGKVLfSSHPDRVRPIASITKLMTA----MVVLDAHQPMNEMVKVDISQTPEMRGVFSRVKlNSEISLRSMLMLALMSSENRAAASLAHAYpg 142
                      6677665999****************....88999999************************999***********************999977 PP

                      ...T.HHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHH CS
  Beta-lactamase2  92 ...g.leavnawlkelglretrlrrklpdleaadkdkrntttardlarllealargellsp 148
                           + a+na +++lg+ +t+  ++         + +n+++a+dl++ll+a  +  ll +
       EHU01206.1 143 gydAfIRAMNAKARALGMMHTHYVEPTGL------SIKNVSSAQDLVKLLKATREYPLLGE 197
                      66545678999999999999999877544......359************98766666655 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.1e-05      0.05      16      67 ..      46      84 ..      34      87 .. 0.81
   2 ?    0.5   0.0     0.062   2.8e+02     222     275 ..     176     232 ..     133     263 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                    EEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHH CS
  Beta-lactamase 16 GvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlql 67
                    ++ ++++ +gkv++               ++d + +iaS+tK++ta++vl+ 
      EHU01206.1 46 SALIVDLTNGKVLF-------------SSHPDRVRPIASITKLMTAMVVLDA 84
                    56677888999984.............778*******************976 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.062
                     EEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEEC...ECSSEEE CS
  Beta-lactamase 222 istardlarflglalegglllsaetlaqltaklssgttrpagiragl...glGwvla 275
                     +s+a dl ++l   +e +ll + +t ++ ta    + ++ +  + ++     Gw+++
      EHU01206.1 176 VSSAQDLVKLLKATREYPLLGELRTTKEETAVFAHPSYALPFRNTNHlvyKNGWHIQ 232
                     799999999994444444444444444443333333333333333333445566555 PP

>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00012      0.55       9      56 ..      37      82 ..      30      91 .. 0.87
   2 ?    3.0   0.0    0.0076        34     329     361 ..     164     196 ..      93     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00012
                   HTTGCGTTSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHH CS
  Peptidase_S13  9 ladpeLegavagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAl 56
                   +a+p++  + +++ + d+++gk+l++ + d+    AS  Kl+TA+  l
     EHU01206.1 37 IAQPQI-ASGSAL-IVDLTNGKVLFSSHPDRVRPIASITKLMTAMVVL 82
                   678998.666676.99***************9999*********9766 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0076
                    B-S-SSS-STT-BBEHHHHHHHHHHHHCTCCHH CS
  Peptidase_S13 329 vLeDgSGLSrknlvtaktlaqlLeaiadqpalq 361
                      ++  GLS kn  +a+ l++lL+a  + p l 
     EHU01206.1 164 HYVEPTGLSIKNVSSAQDLVKLLKATREYPLLG 196
                    445778******************998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2594.93
//
Query:       EHU01207.1  [L=195]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-37  128.1   4.1    3.4e-37  127.9   4.1    1.1  1  DUF1282   Protein of unknown function (DUF1282)
    1.3e-27   96.6   7.1    1.3e-27   96.6   7.1    1.5  1  Yip1      Yip1 domain
  ------ inclusion threshold ------
       0.38   10.6   3.5        1.4    8.8   3.5    2.0  1  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> DUF1282  Protein of unknown function (DUF1282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.9   4.1   5.7e-41   3.4e-37       1     169 [.       7     176 ..       7     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.9 bits;  conditional E-value: 5.7e-41
     DUF1282   1 lltsPaeefeeikkreetgkvlyivlillllliglvvfiystfqvlseiltkqankltlassliisvvfylal..gvlvlayliklmgrtydsqhsysk 97 
                 ll++P +e ++ik++ et+++ y+ ++ll+++++++++++ t+q +++ +++q ++l l  +l ++++fyl+   gv+v++ +i++m+r y   +s+  
  EHU01207.1   7 LLAHPNQEMRTIKQENETVSHHYTHHVLLMAAVPVICAMIGTTQSGWNLGEGQYVQLNLLTALGLGILFYLVIlgGVAVMGRVIHWMARDYPHRPSMGR 105
                 799********************************************************************9999************************ PP

     DUF1282  98 ifafaayalvplflgglalglsllllvalvslllllyvvvLlylGvptlmnirekdraiviallvlvvslli 169
                 + +fa+y+++plfl+gl+++++l +l +l+++l+lly+ +Lly+G+p + ni ++d+++ +++++l++++l+
  EHU01207.1 106 CTVFAGYVATPLFLSGLVALYPLVWLCVLAAALALLYTGYLLYVGIPLFLNI-DRDESLRFSSSTLAIGVLV 176
                 ****************************************************.****************998 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   7.1   2.2e-31   1.3e-27       1     168 [.       7     171 ..       7     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 2.2e-31
        Yip1   1 llldPrevfrrlkkepp.ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfk 98 
                 ll +P++ +r +k+e++ +++ ++ ++ll+a+++++++ +++++ g+ l++g++v +l+l+++lg  i++yl++l g+++++ ++h++a+ +  ++s +
  EHU01207.1   7 LLAHPNQEMRTIKQENEtVSHHYTHHVLLMAAVPVICAMIGTTQSGWNLGEGQYV-QLNLLTALGLGILFYLVILGGVAVMGRVIHWMARDYPHRPSMG 104
                 688*************************************************888.******************************************* PP

        Yip1  99 qtlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaahnlskkkallaalilll 168
                 ++  ++gy ++Pl+l++l+a+++l +l++   l+ +lal+++ +lly+g++ + n+++  +l ++++ l 
  EHU01207.1 105 RCTVFAGYVATPLFLSGLVALYPLVWLCV---LAAALALLYTGYLLYVGIPLFLNIDRDESLRFSSSTLA 171
                 ****************************9...**************************999988887444 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.5   0.00024       1.4       4      27 ..     124     147 ..     123     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00024
        B12D   4 eliPLfvfigagvggavfylvRll 27 
                 +l+PL+  + +++++a++y+ +ll
  EHU01207.1 124 ALYPLVWLCVLAAALALLYTGYLL 147
                 79********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1628.35
//
Query:       EHU01208.1  [L=190]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-19   69.3   5.8      4e-19   69.3   5.8    1.6  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.16   11.6   1.7        0.3   10.7   1.7    1.4  1  CPP1-like    Protein CHAPERONE-LIKE PROTEIN OF POR1-like
       0.61   10.0   2.6         14    5.7   0.5    2.3  2  RseC_MucC    Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   5.8   6.8e-23     4e-19       3     119 ..      23     143 ..      20     144 .. 0.92
   2 ?   -2.9   0.1       1.5   9.1e+03      30      39 ..     167     176 ..     163     187 .. 0.51

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 6.8e-23
  SNARE_assoc   3 sevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvs 95 
                  +e++l+++Gv++     ++  ++l++++g ++G+ + y++gr++g ++lrr    +++v +++rl++r+ +l+++ +r+  ++ r + +++ G++r++
   EHU01208.1  23 GETFLLLGGVAAhegllHYSGVVLAAMAGGVVGDQMLYWIGRRFGTRILRRFKKHQDKVVKANRLIKRRPSLFVIGARFMYGF-RIIGPIIIGASRLK 119
                  678999999999774444444************************8888888888899999*********************9.************** PP

  SNARE_assoc  96 fkrFflatfiGsipwalvyaylGs 119
                  + +Ffl ++ G+++wal++++lG+
   EHU01208.1 120 PLKFFLLNVTGAAVWALLFVTLGY 143
                  ***********************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
  SNARE_assoc  30 Gaslayllgr 39 
                  Ga ++++++ 
   EHU01208.1 167 GAAVVFAFVL 176
                  4444444432 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   5.1e-05       0.3     142     192 ..     129     179 ..     125     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.1e-05
   CPP1-like 142 gravlltlvgLvvGlllGsllasllqvd.valsglsseellvslvtlvllwl 192
                   a++++l++  +G+++G+++a++l++    +++l      + ++++vl w+
  EHU01208.1 129 TGAAVWALLFVTLGYFAGGIIAPWLHKLdQHFKHLLWLG-AAVVFAFVLRWA 179
                 6799*********************88777777666666.677888888776 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0057        34      77     121 ..      27      73 ..      24      82 .. 0.62
   2 ?    5.7   0.5    0.0023        14      64     116 ..     129     185 ..     121     190 .] 0.57

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0057
   RseC_MucC  77 llilgallgsall..gssellaalgallglvlgflivrllskrlkkk 121
                 ll+ g+++ + ll   +  l+a++g+++g  + ++i r++ +r+ ++
  EHU01208.1  27 LLLGGVAAHEGLLhySGVVLAAMAGGVVGDQMLYWIGRRFGTRILRR 73 
                 56666666666655555556666666777667777777776665555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0023
   RseC_MucC  64 lkaallvYllPllllilgallgsall....gssellaalgallglvlgflivrllsk 116
                   aa+++ l+  l+ ++g +++ +l     + + ll + +a++++++  + +r++++
  EHU01208.1 129 TGAAVWALLFVTLGYFAGGIIAPWLHkldqHFKHLLWLGAAVVFAFVLRWAIRRWNH 185
                 567778888888888888888888886665333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1350.77
//
Query:       EHU01209.1  [L=110]
Description: hypothetical protein CKS_3952 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-33  113.8   0.0    4.2e-33  113.6   0.0    1.0  1  Mor           Mor transcription activator family
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.28   10.9   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Mor  Mor transcription activator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   4.6e-37   4.2e-33       1      91 [.       9      99 ..       9     103 .. 0.96

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 4.6e-37
                X-HHHHHHHHHHHHHHHHHHTS.S-....TTSHHHHHHHHHHHH-SS------SHHHHHHHHHHHHHHH--SS-HHHHHHHHT--HHHHHH CS
         Mor  1 srlpelLsdlakhvaaelkrlgeidealaeqigeevadalaahwGGqqiyiPrgvklelelrdreifnefkGnnvaeLarkYglseqwiyk 91
                s+ pelL++la+h+++++ +  +i+ a+a+qig++va+++++ wGGq++y+P+g+++++++rdreif ef+G+n++eLark+g+s+q   +
  EHU01209.1  9 SKGPELLVELAQHTSETVREIIDIEPAVADQIGQAVANRMMQVWGGQNVYFPMGMVWKVSQRDREIFLEFDGRNHHELARKFGVSLQSAIR 99
                589***********************************************************************************98655 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.1e-05      0.28      12      42 ..      68      96 ..      64     100 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
                  -HHHHHHHHHHHTS---HHHHHHHHT--HHH CS
  Sigma70_r4_2 12 perqreifllryleglsykEIAellgisegt 42
                  ++r+reifl   ++g  + E A+++g+s ++
    EHU01209.1 68 SQRDREIFLE--FDGRNHHELARKFGVSLQS 96
                  789******9..8***************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 888.62
//
Query:       EHU01210.1  [L=141]
Description: hypothetical protein CKS_3953 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-40  138.5   1.6    2.3e-40  138.3   1.6    1.1  1  DUF1018   Protein of unknown function (DUF1018)
  ------ inclusion threshold ------
      0.055   13.7   0.1        6.1    7.1   0.0    3.0  4  PPR_2     PPR repeat family
      0.088   12.6   0.0       0.39   10.5   0.0    2.0  2  DUF3368   Domain of unknown function (DUF3368)


Domain annotation for each model (and alignments):
>> DUF1018  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   1.6   3.8e-44   2.3e-40       1     119 []      19     135 ..      19     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 3.8e-44
     DUF1018   1 ldDetYralLerltgktSakdLtdaelakvlaeLkalgfkpkskkkakrkkparkatsaqlrkiealWielakagvvrdrseaaLnafvkrqtgvdrle 99 
                 +d++tYr++L++ltgk S+k ++ ++l++vl+ +k++gf+ k++ ka++  p   ++++q +ki+alW e+a ag+vrd se+aL+ +vkr tg+++l+
  EHU01210.1  19 MDEDTYRQMLQGLTGKASTKGMDTPQLNRVLESMKKKGFRIKPAGKARSGLP--LDNHPQSKKIRALWLEMAAAGTVRDCSEQALALWVKRETGISALR 115
                 8**********************************************99887..7******************************************** PP

     DUF1018 100 wlddeqaskvieaLkkwkkR 119
                 wl++eqas+vie+Lkkw++R
  EHU01210.1 116 WLSNEQASSVIEKLKKWQRR 135
                 ******************98 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.001       6.1      31      48 ..      14      31 ..      11      33 .. 0.91
   2 ?    2.9   0.0     0.021   1.3e+02      24      34 ..      47      57 ..      42      61 .. 0.86
   3 ?   -3.7   0.0       2.5   1.5e+04      20      30 ..      78      88 ..      76      92 .. 0.69
   4 ?   -1.8   0.0      0.64   3.9e+03      20      33 ..     120     133 ..     118     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.001
       PPR_2 31 krglePnsyTysilikgl 48
                ++ l++++ Ty  +++gl
  EHU01210.1 14 RNDLQMDEDTYRQMLQGL 31
                7899*************8 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
       PPR_2 24 klfneMkkrgl 34
                ++++ Mkk+g+
  EHU01210.1 47 RVLESMKKKGF 57
                7899*****97 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.5
       PPR_2 20 eeAfklfneMk 30
                ++   l+ eM 
  EHU01210.1 78 KKIRALWLEMA 88
                66777888886 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.64
       PPR_2  20 eeAfklfneMkkrg 33 
                 e+A ++ ++ kk+ 
  EHU01210.1 120 EQASSVIEKLKKWQ 133
                 78999999999985 PP

>> DUF3368  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.5e-05      0.39      19      36 ..      44      61 ..      42      62 .. 0.86
   2 ?   -1.9   0.0      0.51   3.1e+03      33      45 ..     116     128 ..     114     131 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.5e-05
     DUF3368 19 svkplldaLiqaGfrisp 36
                +++ +l++++++Gfri p
  EHU01210.1 44 QLNRVLESMKKKGFRIKP 61
                56789***********98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.51
     DUF3368  33 rispklyaevLrl 45 
                 ++s +  + v+++
  EHU01210.1 116 WLSNEQASSVIEK 128
                 7777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1092.66
//
Query:       EHU01211.1  [L=71]
Description: hypothetical protein CKS_3954 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 590.82
//
Query:       EHU01212.1  [L=229]
Description: hypothetical protein CKS_3955 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-12   44.8   5.1    1.3e-11   44.2   5.1    1.3  1  DUF2786   Protein of unknown function (DUF2786)


Domain annotation for each model (and alignments):
>> DUF2786  Protein of unknown function (DUF2786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   5.1   7.4e-16   1.3e-11       1      40 []       7      45 ..       7      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 7.4e-16
     DUF2786  1 kilekIrKLLalAesstneaEAeaAlakAqeLmarynldq 40
                k+le  +KLLalA  s+n++EA+ Al+ Aq+Lm+ yn++q
  EHU01212.1  7 KLLENLKKLLALA-KSDNPHEAALALQRAQKLMQAYNITQ 45
                678889*******.************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1771.80
//
Query:       EHU01213.1  [L=98]
Description: hypothetical protein CKS_3956 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0037   17.7   0.1     0.0041   17.5   0.1    1.3  1  PRA-PH     Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.081   13.1   0.3       0.12   12.6   0.3    1.3  1  MazG       MazG nucleotide pyrophosphohydrolase domain
        0.2   11.0   0.0        0.2   11.0   0.0    1.1  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   6.9e-07    0.0041      29      57 ..      27      60 ..       9      89 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.9e-07
                HHHHHHHHHHHHHT-SC.....HHHHHHHHHHHH CS
      PRA-PH 29 aligEEavElleaaseg.....dlaeladelaDl 57
                 +++EEa+El +aa+++     + ++la elaD+
  EHU01213.1 27 LKLKEEAAELAAAAARNmnglgNEVDLAGELADV 60
                589************9999999***********7 PP

>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3     2e-05      0.12       2      36 ..      21      60 ..      20      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                -HHHHHHHHHHHHHHHHHHHHT.....T-HHHHHHHHHHH CS
        MazG  2 tpetllaylleEvgEvaeaIkk.....edrdeleeELGDv 36
                +pe+ ++ l eE+ E+a a ++     +++ +l+ EL+Dv
  EHU01213.1 21 GPEAQALKLKEEAAELAAAAARnmnglGNEVDLAGELADV 60
                67888899**************666665556********8 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.4e-05       0.2      59      87 ..      55      83 ..      30      98 .] 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
                HHHHHHHHHHHHHHHTT-EEEEEEESSTT CS
   Cellulase 59 nslerveevvkyakenglyvildiHseeg 87
                  l++ve +++ +  ng+  ++d H++++
  EHU01213.1 55 GELADVEIMIEQFRLNGMGLMIDFHKQKK 83
                5799*********************9843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 730.31
//
Query:       EHU01214.1  [L=62]
Description: hypothetical protein CKS_3957 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.02   15.1   4.9       0.38   11.1   0.5    2.2  2  zf-LITAF-like  LITAF-like zinc ribbon domain
       0.02   14.9   3.5       0.03   14.4   3.5    1.3  1  CxC5           CxC5 like cysteine cluster associated with KDZ
       0.03   13.7   2.2        1.5    8.4   0.1    2.3  2  zf-ribbon_3    zinc-ribbon domain
      0.037   14.5   0.5       0.65   10.5   0.1    2.1  2  Ribosomal_L33  Ribosomal protein L33
      0.048   13.6   4.9        2.1    8.4   0.8    2.5  2  zinc_ribbon_4  zinc-ribbon domain
      0.097   12.3   1.7         11    5.7   0.1    2.4  2  zf_UBZ         Ubiquitin-Binding Zinc Finger


Domain annotation for each model (and alignments):
>> zf-LITAF-like  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4    0.0026       7.8       6      17 ..       3      14 ..       1      37 [. 0.72
   2 ?   11.1   0.5   0.00013      0.38       5      19 ..      36      50 ..      34      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0026
  zf-LITAF-like  6 vdCpaCqqrvvT 17
                   ++C +C++ ++T
     EHU01214.1  3 IKCSNCKKGITT 14
                   455566555555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
  zf-LITAF-like  5 qvdCpaCqqrvvTsv 19
                   ++ Cp+C+q+  T+v
     EHU01214.1 36 TLVCPHCSQHYYTEV 50
                   579**********98 PP

>> CxC5  CxC5 like cysteine cluster associated with KDZ transposases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.5   9.9e-06      0.03      12      60 ..       4      48 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.9e-06
        CxC5 12 kClnceckrrsllqkesqrdvvlftldkgvlpvwvlslyCpkCktrYyp 60
                kC nc++     +++ +  d+ ++t  k  +p+ +++l Cp+C+ +Yy 
  EHU01214.1  4 KCSNCKKG----ITTLKFSDASVITSGKYHVPAVLITLVCPHCSQHYYT 48
                45555544....577889999******9999****************97 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00049       1.5       3      11 ..       3      12 ..       1      16 [. 0.80
   2 ?    5.2   0.3     0.005        15      18      22 ..      38      42 ..      36      44 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00049
  zf-ribbon_3  3 vrCPnCGa.p 11
                 ++C+nC++ +
   EHU01214.1  3 IKCSNCKKgI 12
                 6899999866 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.005
  zf-ribbon_3 18 vCpyC 22
                 vCp+C
   EHU01214.1 38 VCPHC 42
                 68888 PP

>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.052   1.6e+02       6      12 ..       4      10 ..       1      30 [. 0.75
   2 ?   10.5   0.1   0.00022      0.65       2      18 ..      34      49 ..      33      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.052
                   EET.... CS
  Ribosomal_L33  6 eCtecks 12
                   +C++ck+
     EHU01214.1  4 KCSNCKK 10
                   7999998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00022
                   EEEEEET......EEEE CS
  Ribosomal_L33  2 kvtLeCtecksrnYttt 18
                    +tL+C  c ++ Y+t+
     EHU01214.1 34 LITLVCPHCSQH-YYTE 49
                   79*********9.8886 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8   0.00069       2.1       1      10 [.       1      10 [.       1      13 [. 0.66
   2 ?    6.9   0.2     0.002       5.9       4      12 ..      38      46 ..      36      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00069
  zinc_ribbon_4  1 MkitCpsCka 10
                   M i C +Ck+
     EHU01214.1  1 MSIKCSNCKK 10
                   6666666665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.002
  zinc_ribbon_4  4 tCpsCkaky 12
                   +Cp+C+  y
     EHU01214.1 38 VCPHCSQHY 46
                   7****9988 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2    0.0038        11       3      13 ..       3      13 ..       2      17 .. 0.82
   2 ?    5.7   0.1    0.0037        11       2      12 ..      36      46 ..      36      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0038
      zf_UBZ  3 ylCerCgkeip 13
                + C+ C+k i 
  EHU01214.1  3 IKCSNCKKGIT 13
                68******885 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0037
      zf_UBZ  2 tylCerCgkei 12
                t +C+ C ++ 
  EHU01214.1 36 TLVCPHCSQHY 46
                579*****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 473.29
//
Query:       EHU01215.1  [L=203]
Description: hypothetical protein CKS_3958 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-85  286.1   0.9    1.3e-85  285.9   0.9    1.0  1  DUF3164   Protein of unknown function (DUF3164)


Domain annotation for each model (and alignments):
>> DUF3164  Protein of unknown function (DUF3164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.9   0.9   7.3e-90   1.3e-85       1     193 [.       9     201 ..       9     202 .. 1.00

  Alignments for each domain:
  == domain 1  score: 285.9 bits;  conditional E-value: 7.3e-90
     DUF3164   1 ylkdakGalvpeakikpidklrdelVkeivkkakklqkqlaefkaelfedvsafvdlsaeeygvkvggkkGnvtlvsfDgkykvqravqeriefderlq 99 
                 y+kd+kG+lvp+++++++d ++d++Vke v++ak+++++l++fk+++f++++a++dl+ae+yg++ gg+kGnvt++sfDg ++++++vqe+++f+++lq
  EHU01215.1   9 YMKDRKGRLVPVDQVSDYDLAMDSFVKEQVAAAKVKRDELSDFKRRAFDECYAWLDLVAEKYGRTRGGAKGNVTFSSFDGAQQITIRVQETLTFGPELQ 107
                 9************************************************************************************************** PP

     DUF3164 100 aAKelideclkewsegadeeikalvedaFqvdkeGkintkriLsLrrldiedekWkkAmeaisdsvqvvgsksyirlyereddgkleqisldla 193
                 +AK+lidec++ewsega+++++a+++daFqvdkeG++nt riLsLrr++i+de+W++Ameais+s+qv++sk+yi+++e++++gkl +i+ld+a
  EHU01215.1 108 IAKDLIDECVTEWSEGANANLRAIISDAFQVDKEGQLNTGRILSLRRVKIQDERWNRAMEAISESLQVAMSKTYINFREKDKHGKLINIPLDIA 201
                 *********************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1569.21
//
Query:       EHU01216.1  [L=89]
Description: hypothetical protein CKS_3959 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.12   11.9   0.1       0.18   11.3   0.1    1.3  1  Mu-like_Com  Mu-like prophage protein Com


Domain annotation for each model (and alignments):
>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.8e-06      0.18       5      19 ..      43      57 ..      39      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-06
  Mu-like_Com  5 lRCGeCaRLLaKaeA 19
                  R G+CaRLL ++ A
   EHU01216.1 43 ARNGHCARLLEQGKA 57
                 699*******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 731.56
//
Query:       EHU01217.1  [L=388]
Description: hypothetical protein CKS_3960 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-17   63.8   0.0    6.1e-17   62.2   0.0    1.8  2  AAA_22           AAA domain
      9e-05   22.9   1.9    0.00028   21.3   0.3    2.4  2  AAA_16           AAA ATPase domain
    0.00061   19.9   0.0      0.002   18.3   0.0    1.8  2  DUF87            Helicase HerA, central domain
    0.00084   19.9   0.1     0.0021   18.6   0.1    1.6  1  ABC_tran         ABC transporter
     0.0044   16.9   0.1     0.0082   16.0   0.1    1.4  1  Helicase_RecD    Helicase
      0.005   16.6   0.0      0.011   15.5   0.0    1.6  1  AAA_30           AAA domain
     0.0074   16.1   0.0      0.014   15.1   0.0    1.6  1  PRK              Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.015   15.0   0.0      0.034   13.9   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.016   15.1   0.0       0.06   13.3   0.0    1.9  2  RsgA_GTPase      RsgA GTPase
      0.017   14.8   0.0       0.03   14.0   0.0    1.3  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.017   15.5   0.1       0.38   11.2   0.1    2.6  1  AAA              ATPase family associated with various cellul
      0.021   15.0   0.1       0.23   11.6   0.0    2.6  3  AAA_33           AAA domain
      0.028   14.2   0.1        1.4    8.7   0.0    2.9  3  MEDS             MEDS: MEthanogen/methylotroph, DcmR Sensory 
      0.034   14.2   0.0      0.092   12.8   0.0    1.9  1  MMR_HSR1         50S ribosome-binding GTPase
      0.073   13.0   0.0        0.3   11.0   0.0    2.1  1  MobB             Molybdopterin guanine dinucleotide synthesis
      0.085   12.6   0.0        0.2   11.4   0.0    1.6  1  Sigma54_activat  Sigma-54 interaction domain
      0.092   13.1   0.1       0.51   10.6   0.1    2.2  2  HAD_SAK_2        HAD domain in Swiss Army Knife RNA repair pr
      0.093   12.7   0.1          1    9.3   0.0    2.9  3  AAA_5            AAA domain (dynein-related subfamily)
      0.097   12.4   0.0        1.4    8.7   0.0    2.3  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.12   12.3   0.0       0.16   11.8   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea
       0.12   12.7   0.5       0.33   11.3   0.5    1.7  1  HTH_31           Helix-turn-helix domain
       0.12   12.9   0.1        0.3   11.6   0.0    1.8  1  AAA_18           AAA domain
       0.13   12.5   0.0       0.44   10.7   0.0    1.9  1  CUT              CUT domain
       0.17   11.0   0.0       0.35   10.0   0.0    1.4  1  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         7   5.2e+03      71      90 ..      39      58 ..      16      67 .. 0.64
   2 !   62.2   0.0   8.1e-20   6.1e-17       2     136 ..     142     284 ..     140     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7
      AAA_22 71 erlsseellealeqalrara 90
                +r s ee++++l+ +l++++
  EHU01217.1 39 PRTSPEEVRQRLASYLESQG 58
                55666666666666666654 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 8.1e-20
      AAA_22   2 rktagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsst.......sskdllrellralglelka..erlsseell.ealeqal 86 
                 r + g+l+v+GesG+GK+tl r l e+ ++e      +++v+    ++ + +++       + + +++++ + +        + ++s++ + ++l++ l
  EHU01217.1 142 R-HGGFLAVIGESGAGKSTLRRDLIERVNRE------NAPVIviepYIIAMEDNdvkgktlKAAAIAEAIISTIA----PleSIKRSQDARfRQLHRVL 229
                 4.89***********************9655......55555558866666666663333555555555555555....34435777777779999999 PP

      AAA_22  87 rarav...ielliiDEaqhlrseealeeLrsllnl...srkgvqliLvGtpelrkl 136
                 ++ +     ++l+i+Ea+ l +   l++L+++++l    +k+++++L+G+pel++ 
  EHU01217.1 230 KDSSQagfSHVLVIEEAHSL-PIPTLKHLKRFFELesgFKKLLSIVLIGQPELADK 284
                 999999999***********.********************************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.5   4.8e+03      80     106 ..      21      47 ..       6      96 .. 0.63
   2 !   21.3   0.3   3.8e-07   0.00028      14     147 ..     136     249 ..     128     276 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.5
      AAA_16  80 ellrqlldeaesaeleawrekleeala 106
                  +   +++ a+  ++++w+++ +e+++
  EHU01217.1  21 AVAVSEATLAQIVNHNEWPRTSPEEVR 47 
                 444455555555666666666666666 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3.8e-07
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekd.......ggiflrgkcdql.esaipysalaqalareellrqlldeaesaeleawrekleea 104
                 ++++++r g  + + ++GesG GKs+l r l ++++++       + + ++ +  +  ++ +                         +++a +e++ ++
  EHU01217.1 136 ALFQTARHG--GFLAVIGESGAGKSTLRRDLIERVNREnapviviEPYIIAMEDNDVkGKTL-------------------------KAAAIAEAIIST 207
                 566777777..78********************99999443333322221111111111112.........................223333333333 PP

      AAA_16 105 laavpelagaeasrllellkrll.allsrderplvlvlDdlqwa 147
                 +a+  ++++++  r+++l  r l + ++ + +  vlv+++++ +
  EHU01217.1 208 IAPLESIKRSQDARFRQL-HRVLkDSSQAGFS-HVLVIEEAHSL 249
                 333333333333333333.3333122222222.44444444444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.7e-06     0.002      26      58 ..     147     178 ..     142     181 .. 0.94
   2 ?   -2.4   0.0       5.4     4e+03      96     151 ..     289     343 ..     284     355 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.7e-06
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatilil 58 
                 lA++g++G+GKS++ + L+e++  + +a+++++
  EHU01217.1 147 LAVIGESGAGKSTLRRDLIERVN-RENAPVIVI 178
                 69*********************.99*****98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.4
       DUF87  96 sldpeelldllee.ddkpaaavqrsvleealdqakakeekeklssdepveklleelk 151
                 +++++e+++ +e+ +  p+ + ++++l+ +l++a   ++  ++   + ve ++  l 
  EHU01217.1 289 NMEVREVVQRCEVvELLPLDNSLEEFLAFKLQRAG--KQLADIMDPSAVEAIRARLS 343
                 66777777777777777777778888888877776..55555555555555555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.8e-06    0.0021       9      42 ..     142     175 ..     137     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.8e-06
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGei 42 
                 ++g  +a++Ge+GaGKStL + l++ ++ ++  +
  EHU01217.1 142 RHGGFLAVIGESGAGKSTLRRDLIERVNRENAPV 175
                 678899*************999998888766655 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05    0.0082       2     111 ..     149     258 ..     148     264 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqa...dll 94 
                    ++++ G GKS++   +++++ +e+ + ++v  p   +++   +   k+l+a  + e   ++ a   e  +r+q  ++ + +++lk ++qa   ++l
     EHU01217.1 149 VIGESGAGKSTLRRDLIERVNREN-APVIVIEPYIIAMEDN-DVKGKTLKAAAIAEAIISTIAP-LESIKRSQDARFRQLHRVLKDSSQAgfsHVL 241
                    567789999998888877776665.4777778887777764.4445777777777655444444.4555669*************9999999999* PP

  Helicase_RecD  95 vvDEAAaiplpllkkll 111
                    v++EA ++p+p+lk+l 
     EHU01217.1 242 VIEEAHSLPIPTLKHLK 258
                    *************9985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-05     0.011      12     113 ..     139     262 ..     134     280 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
      AAA_30  12 alltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv..Laeelgieastiakllkrlk......................grarl 86 
                 +++ +g  + ++ G  G+GK+t+ + l e +++++ +vi++ p   a ++  ++ +  ++a+ ia+ + ++                       +  + 
  EHU01217.1 139 QTARHGG-FLAVIGESGAGKSTLRRDLIERVNRENAPVIVIEPYIIAMEDndVKGK-TLKAAAIAEAIISTIaplesikrsqdarfrqlhrvlkDSSQA 235
                 4555554.8999**********************9777777776666554222221.223333333332222344455556666666666688866677 PP

      AAA_30  87 epgtllivDEagmvdtkqlaallkaae 113
                   +++l++ Ea  + + +l++l +  e
  EHU01217.1 236 GFSHVLVIEEAHSLPIPTLKHLKRFFE 262
                 8889******99998888777766554 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05     0.014       2      40 ..     147     185 ..     146     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
         PRK   2 IgvagsSGaGkttvarklekifgrekvkaaeiegdsflr 40 
                 ++v g+SGaGk+t+ r l ++++re+ +  +ie   + +
  EHU01217.1 147 LAVIGESGAGKSTLRRDLIERVNRENAPVIVIEPYIIAM 185
                 6899***********************977776544443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.5e-05     0.034      19      38 ..     140     160 ..     132     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
      AAA_29  19 idlkg.atlltGpsGsGKSTl 38 
                   ++g +  ++G+sG+GKSTl
  EHU01217.1 140 TARHGgFLAVIGESGAGKSTL 160
                 555666999***********8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     8e-05      0.06      98     124 ..     142     169 ..     118     177 .. 0.78
   2 ?   -2.4   0.0       5.1   3.8e+03      28      54 ..     218     244 ..     194     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8e-05
                  TT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  98 kd.ktsvlvGqSGvGKStLinallpele 124
                  ++  + +++G+SG+GKStL   l+++ +
   EHU01217.1 142 RHgGFLAVIGESGAGKSTLRRDLIERVN 169
                  44378899***********999988755 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.1
                  TT--HHHHHHHHHHHHHTT-EEEEEEE CS
  RsgA_GTPase  28 pelslnlldrfLvlaeekgiepvivln 54 
                  ++ + ++l+r+L    ++g + v+v+ 
   EHU01217.1 218 QDARFRQLHRVLKDSSQAGFSHVLVIE 244
                  455667777777777777777777765 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     4e-05      0.03      10      64 ..     140     300 ..     133     317 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4e-05
                  -EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE........................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................... RF
  ATP-synt_ab  10 pivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg........................................................... 48 
                  +  +G+ ++++g++g Gk+++ + l++  n ++a ++v                                                            
   EHU01217.1 140 TARHGGFLAVIGESGAGKSTLRRDLIERVNRENAPVIVIepyiiamedndvkgktlkaaaiaeaiistiaplesikrsqdarfrqlhrvlkdssqagf 237
                  5667999**********************999988888889999****************************************************** PP

                  ...............................................ESEEHHHHHHHHHHCH CS
                  ...............................................xxxxxxxxxxxxxxxx RF
  ATP-synt_ab  49 ...............................................iGergnevaevleefp 64 
                                                                 + er+ ev+ev+++ +
   EHU01217.1 238 shvlvieeahslpiptlkhlkrffelesgfkkllsivligqpeladkMSERNMEVREVVQRCE 300
                  **********************************************************99865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00051      0.38       4      70 ..     150     249 ..     147     301 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00051
                 ESSTTSSHHHHHHHHHHHHTHE..........EEEEETTTCSSS.......................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGG CS
         AAA   4 yGppGtGKTllakavakelgve..........fleisgsellsk.......................yvgesekkirelfkeakekakpsilfiDEida 69 
                 +G  G GK++l + +++ +++e          ++ ++  ++  k                        + ++ ++++ ++k+ ++    ++l+i+E+++
  EHU01217.1 150 IGESGAGKSTLRRDLIERVNREnapviviepyIIAMEDNDVKGKtlkaaaiaeaiistiaplesikrSQDARFRQLHRVLKDSSQAGFSHVLVIEEAHS 248
                 66667777777777777764333333333333222222222222444444444444444444444446777888888888886655544*********9 PP

                 H CS
         AAA  70 l 70 
                 l
  EHU01217.1 249 L 249
                 8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.9   2.9e+03     103     116 ..      38      51 ..      18      72 .. 0.80
   2 ?   11.6   0.0    0.0003      0.23       4      47 ..     149     205 ..     147     245 .. 0.64
   3 ?   -2.0   0.0       4.7   3.5e+03      25      46 ..     273     294 ..     263     353 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.9
      AAA_33 103 vvetdeetlkeRla 116
                 + +t++e+ ++Rla
  EHU01217.1  38 WPRTSPEEVRQRLA 51 
                 67788888888876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0003
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdtlrrrlfgtdqqskt..........d 47 
                 ++G +G+GKstl + l+++       v++ +++ + +++ +d++ kt           
  EHU01217.1 149 VIGESGAGKSTLRRDLIERVNrenaPVIVIEPY-IIAMEDNDVKGKTlkaaaiaeaiI 205
                 79**********999976655666566666666.456777777777633333333330 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.7
      AAA_33  25 avllssdtlrrrlfgtdqqskt 46 
                  vl+ +++l +++ ++  +  +
  EHU01217.1 273 IVLIGQPELADKMSERNMEVRE 294
                 6677777777777663333222 PP

>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.8   2.1e+03      61      89 ..      27      52 ..       4      77 .. 0.54
   2 ?    8.7   0.0    0.0019       1.4      66     131 ..     204     270 ..     170     273 .. 0.82
   3 ?    1.9   0.0      0.24   1.8e+02      16      55 ..     310     350 ..     279     356 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.8
        MEDS 61 gql.eildaeetylrgggfdpermlealrr 89
                  l +i++++e+     + +pe++ ++l++
  EHU01217.1 27 ATLaQIVNHNEWP----RTSPEEVRQRLAS 52
                3344455555444....3333333333333 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0019
        MEDS  66 ldaeetylrgggfdpermlealrralakaladgyaglrvigemt.walrspaereelleyEallnel 131
                 + ++ + l++ ++++++ +++l+r+l+++ ++g++++ vi e+    +++ ++++++ e+E+   +l
  EHU01217.1 204 IISTIAPLESIKRSQDARFRQLHRVLKDSSQAGFSHVLVIEEAHsLPIPTLKHLKRFFELESGFKKL 270
                 4455566889999******************************977899999999999999977765 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.24
        MEDS  16 alvpfikagl.argekvlyvasastldelrealrkagldvd 55 
                 +l +f++  l ++g +++ ++++s ++++r++l++ g +  
  EHU01217.1 310 SLEEFLAFKLqRAGKQLADIMDPSAVEAIRARLSNLGSNRK 350
                 56777887874567799999999999999999999887765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012     0.092       2      23 ..     147     168 ..     146     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgek 23 
                  a++G + +GKStL + l++++
  EHU01217.1 147 LAVIGESGAGKSTLRRDLIERV 168
                 589***************9852 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0004       0.3       2      66 ..     147     209 ..     146     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0004
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgtiKhahhgfd.vdkpgkDsyrhrkAGAkevlvaske 66 
                 l+++g sg+GK tL   li+ +++++  v +i     +++  d +gk    +++A  +e ++++  
  EHU01217.1 147 LAVIGESGAGKSTLRRDLIERVNRENAPVIVIEPYIIAMEdNDVKGK---TLKAAAIAEAIISTIA 209
                 789***********************999999876666654666666...3444555555555555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00026       0.2       9      57 ..     131     179 ..     124     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
                      HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEE CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavn 57 
                      + ++e + ++a++   + + GesG+GK++l r + e+ +r+++p++ ++
       EHU01217.1 131 RYVREALFQTARHGGFLAVIGESGAGKSTLRRDLIERVNRENAPVIVIE 179
                      55666666667777777899************************99875 PP

>> HAD_SAK_2  HAD domain in Swiss Army Knife RNA repair proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00069      0.51      27      79 ..      13      65 ..       4      96 .. 0.71
   2 ?   -1.0   0.0       2.6   1.9e+03      76     111 ..     278     307 ..     211     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00069
   HAD_SAK_2 27 ldpeaverlkriveatgakiVlsstWrrredeelkallkaagrpriigvtpdl 79
                + +++v+r  ++ eat a+iV +  W r+ +ee++++l+++ + + i + +++
  EHU01217.1 13 IPQAVVARAVAVSEATLAQIVNHNEWPRTSPEEVRQRLASYLESQGINTAKSF 65
                4566999999*9*****************996666666655544444433333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
   HAD_SAK_2  76 tpdlpeeeseeekksRaqeilewlrrheeveawval 111
                  p+l ++      ++R+ e++e ++r  ev + + l
  EHU01217.1 278 QPELADK-----MSERNMEVREVVQRC-EVVELLPL 307
                 3333333.....338888888888877.55555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.1   3.8e+03      57      96 ..      21      61 ..       5      73 .. 0.63
   2 ?    9.3   0.0    0.0014         1       4      88 ..     149     228 ..     147     262 .. 0.67
   3 ?   -1.9   0.0       4.1   3.1e+03      30      47 ..     284     301 ..     269     324 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.1
                --------G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE. CS
       AAA_5 57 splvraaregeilvlDEverae.sevlnsLlslleerrlll 96
                 ++v +a+ ++i+  +E  r +  ev ++L s+le + + +
  EHU01217.1 21 AVAVSEATLAQIVNHNEWPRTSpEEVRQRLASYLESQGINT 61
                45555555666666666666666667777777777665555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
                 EE--SSSSHHHHHHHGGGGBS--EEEE.E--T...T--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHH CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyv.qltr...dtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsl 88 
                 ++G++G gKs+l + l +++nre   v  +      ++ +d+kg++          + ++  +a  + i+ l+ ++r +++ +  L+++
  EHU01217.1 149 VIGESGAGKSTLRRDLIERVNRENAPViVIEPyiiAMEDNDVKGKTL---------KAAAIAEAIISTIAPLESIKRSQDARFRQLHRV 228
                 69******************554333202222111455555555555.........344444555555555555555555555555555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.1
                 EE--TT--HHHHH--B-- CS
       AAA_5  30 vqltrdtteedlkgrrei 47 
                 ++  r+++ +++++r e+
  EHU01217.1 284 KMSERNMEVREVVQRCEV 301
                 566788888888888876 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0018       1.4       1      30 [.     149     178 ..     149     179 .. 0.92
   2 ?    0.8   0.0      0.47   3.5e+02     152     223 ..     232     310 ..     214     316 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0018
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavv 30 
                 v+G  G+GK+t+ + l+e ++ ++ +v v+
  EHU01217.1 149 VIGESGAGKSTLRRDLIERVNRENAPVIVI 178
                 89******************9999988876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.47
  ATP_bind_1 152 mlrlelPhvvvlnkfDllkeklekeleffedvea.lslllekee........ekykklaeaiaelleefalvlrflplsse 223
                   +++  hv v+ +++ l   + k+l++f ++e+ +++ll            +k+++ + +++e+++  + v ++lpl+++
  EHU01217.1 232 SSQAGFSHVLVIEEAHSLPIPTLKHLKRFFELESgFKKLLSI-VligqpelaDKMSERNMEVREVVQRCEVV-ELLPLDNS 310
                 556677777777777777655666777766665423333322.14666778899999999******999999.88888765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00022      0.16      22     158 ..     146     270 ..     129     329 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdk....yviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkk 116
                 ++ + G  g GK++L + +ie+ +  +        y+ia+++ + + ++ +      +  +++a+ +++   e    +k+ +   f+++ ++l++ ++ 
  EHU01217.1 146 FLAVIGESGAGKSTLRRDLIERVNRENApvivIEPYIIAMEDNDVKGKTLK------AAAIAEAIISTIAPLES---IKRSQDARFRQLHRVLKDSSQA 235
                 56688******************8888856555569999998888888887......66667777555555443...3555566688999999999999 PP

    ATPase_2 117 gkkiiiiiDelqklidlglngaellvkeLlnliesltkekhl 158
                 g   +++i e+  l    +      +k L +++e  +  k+l
  EHU01217.1 236 GFSHVLVIEEAHSLP---IP----TLKHLKRFFELESGFKKL 270
                 999999999988776...22....355555555555555555 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00045      0.33      12      49 ..      10      48 ..       3      57 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00045
      HTH_31 12 raGLsqeevAerlgvsestlsrlEq.Grrgrpspavlea 49
                +a++ q+ vA+++ vse+tl ++ +  +++r sp+ +++
  EHU01217.1 10 EARIPQAVVARAVAVSEATLAQIVNhNEWPRTSPEEVRQ 48
                56689********************88888888887664 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00041       0.3       3     113 ..     149     288 ..     147     303 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00041
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvid 80 
                 + G +G+GK+tl + L +r +                      g  l+  a  + +  +  p   ++ kr ++ +  +l++ l+ +s+  +  ++lvi+
  EHU01217.1 149 VIGESGAGKSTLRRDLIERVNRenapviviepyiiamedndvkGKTLKAAAIAEAIISTIAPL--ESIKRSQDARFRQLHRVLKDSSQ-AGFSHVLVIE 244
                 7899************88854456777888888888888888888888888888888888888..55555555555556666666554.5678888999 PP

      AAA_18  81 ghlaeleseaakdikk............vvLtaspeelleRlekR 113
                   ++ ++++    + +            +vL   pe l++ +++R
  EHU01217.1 245 EAHSLPIPTLKHLKRFfelesgfkkllsIVLIGQPE-LADKMSER 288
                 888888877554444466666666676666666553.55555555 PP

>> CUT  CUT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00059      0.44      15      67 ..       5      54 ..       2      62 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00059
         CUT 15 keeLkrasisqavFAekvlnrsqgtlselLrkPkpwenlkagrevyirmqnwL 67
                k++Lk+a i+qav A+ v+  s  tl+++ ++   w   +   ev +r+ ++L
  EHU01217.1  5 KQQLKEARIPQAVVARAVA-VSEATLAQIVNH-NEWPRTSP-EEVRQRLASYL 54
                89*************9886.699999999986.34555555.45555666666 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00047      0.35       6     101 ..     131     230 ..     127     236 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00047
                 HHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE...........EEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHH CS
      NB-ARC   6 ekviekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawv...........vvsktdkseeiletilkeLslseddleekeeveslk 93 
                 + v e L++    +  ++a+ G  G GK+tl ++ ++    v+++   v+ +           v +kt k   i e+i+  +       ++k +++ + 
  EHU01217.1 131 RYVREALFQTARHG-GFLAVIGESGAGKSTLRRDLIER---VNRENAPVIVIepyiiamedndVKGKTLKAAAIAEAIISTIAPL---ESIKRSQDARF 222
                 56778888655555.79**************9998887...55554444445566666777766677777777777777777555...33333333456 PP

                 HHHHHHCC CS
      NB-ARC  94 rklvrlLl 101
                 r+l+r+L+
  EHU01217.1 223 RQLHRVLK 230
                 77777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2706.36
//
Query:       EHU01218.1  [L=589]
Description: hypothetical protein CKS_3961 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-12   48.2   0.0    2.7e-12   46.9   0.0    1.7  1  rve       Integrase core domain
     0.0032   17.2   1.3      0.012   15.4   0.1    2.6  2  HTH_8     Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.041   13.7   0.1          2    8.3   0.1    2.7  2  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   4.6e-16   2.7e-12       3     117 ..     152     298 ..     150     300 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 4.6e-16
         rve   3 rpgelwqvDvt....vvripdggg.........................kayllvvvddfsrlilaealsdemdastvlalleravarfggve.....p 67 
                 +p+++w++D+     ++   +                            +++ + ++d  s++i++e++   ++ ++++ +l +a++ +gg       p
  EHU01218.1 152 HPNHVWEIDASlctlYYLSNG--HkglqvmdsakfyknkpaniariasdRVWSYEITDHTSGWIYVEYVMGAESGENLCSVLINAMQERGGADvlhgvP 248
                 8********988754444333..246*****************************************************************99****** PP

         rve  68 ervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtlkd 117
                 ++++ D gs+ t+  +++++++lgi++  ++p++++  G vE++  ++++
  EHU01218.1 249 KILYLDPGSANTAGMTKNMCRSLGINLIAHKPHNARATGQVEKARDIIER 298
                 ******************************************98877776 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     2e-06     0.012      23      41 ..      30      48 ..      29      48 .. 0.93
   2 ?   -2.0   0.1      0.55   3.3e+03       6      17 ..      70      81 ..      68      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-06
                HHHHHHTS-HHHHHHHHHH CS
       HTH_8 23 kAArlLGisRrtLyrKLkk 41
                +A+ +LG+sR tL rKLk+
  EHU01218.1 30 AACAELGMSRATLLRKLKE 48
                6999*************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.55
                HHHHHHHHHHHT CS
       HTH_8  6 EkelIeaALert 17
                E+ lI a+L+++
  EHU01218.1 70 EAALISATLREA 81
                8999*****986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00034         2       6      36 ..       7      44 ..       2      48 .. 0.79
   2 ?    2.2   0.0     0.028   1.7e+02      17      41 ..     108     132 ..      90     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00034
      HTH_23  6 eRlr.illllae......GlsvreIAreLgvsrrTvyr 36
                eRl  +++++++      G+ + ++++eLg+sr T+ r
  EHU01218.1  7 ERLVyVARAARDaghgkrGAIYDAACAELGMSRATLLR 44
                5555566777766777779****************865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.028
      HTH_23  17 GlsvreIAreLgvsrrTvyrwlkry 41 
                 G + ++  + +  s+ T++r l+ y
  EHU01218.1 108 GRTDEATGEFFPLSEDTISRALRNY 132
                 7888899999999**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4567.05
//
Query:       EHU01219.1  [L=302]
Description: hypothetical protein CKS_3962 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-07   30.4   0.2    7.6e-07   29.4   0.2    1.5  1  DUF3102     Protein of unknown function (DUF3102)
  ------ inclusion threshold ------
       0.11   11.6   1.4       0.17   10.9   1.4    1.3  1  Atg14       Vacuolar sorting 38 and autophagy-related subunit
       0.31   11.1   7.8        1.8    8.6   4.3    2.6  2  TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
       0.85   10.2   4.2       0.34   11.5   1.0    1.9  2  BST2        Bone marrow stromal antigen 2
       0.89   10.0   5.3       0.71   10.3   3.1    1.9  3  DUF1690     Protein of Unknown function (DUF1690)


Domain annotation for each model (and alignments):
>> DUF3102  Protein of unknown function (DUF3102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   2.1e-10   7.6e-07      24     129 ..      64     171 ..      45     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.1e-10
     DUF3102  24 saieiGrrLkEakellpyGewlkwLeesvsysqrtAerlmrlfeeyGskllasad..eassnsealsnltytqaliLlgvpeeeReefiaeldvesmst 120
                 +++e G+rL   ke  p+G++++ +e++ s s+rtA+ +m+   +y s +l+ ++   a   +++l +l   +   L+++ +      +   d++ m++
  EHU01219.1  64 AMLEAGKRLVILKENEPHGDFIDIVESQLSLSKRTAQVMMQASLKYLSPKLEPKAqaLALLGKTKLFELMTEDDEDLVELADGGTIAGMSLDDIDRMTS 162
                 45799*****************************************988887776334445667778888899999999999999999999******** PP

     DUF3102 121 reLqkavke 129
                 reL+ a++e
  EHU01219.1 163 RELKAALRE 171
                 ****99986 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.4   4.9e-05      0.17      88     154 ..     160     226 ..     156     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.9e-05
       Atg14  88 dklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqklsslsskt 154
                 ++ ++lk++++e++++ a++++ l++++++++sl+++le++ + q  k  +++k+ +   ++l  + 
  EHU01219.1 160 MTSRELKAALREARETNAAQQRVLADKNEKIDSLSTKLEKKSRIQPPKPDEEVKKLRAEVTALAVEA 226
                 5678999***********************************9999999999998877766665444 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.3   0.00049       1.8      34      73 ..     161     200 ..     155     201 .. 0.92
   2 ?    2.9   0.1      0.03   1.1e+02      11      25 ..     209     223 ..     207     230 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00049
  TMF_DNA_bd  34 tikkLrkknkelekeikelkkkleklekeleeleerlkea 73 
                 t  +L++ ++e+ ++ + +++ l+++++++++l+ +l+++
  EHU01219.1 161 TSRELKAALREARETNAAQQRVLADKNEKIDSLSTKLEKK 200
                 6679********************************9986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.03
  TMF_DNA_bd  11 DeqIaqLmeEGekLs 25 
                 De++++L++E ++L+
  EHU01219.1 209 DEEVKKLRAEVTALA 223
                 555555555555554 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.8   6.6e+03      53      76 ..      93     115 ..      87     123 .. 0.54
   2 ?   11.5   1.0   9.5e-05      0.34      18      80 ..     161     224 ..     152     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  53 sLekekaqsqkqqakvqelqgeik 76 
                 sL k +aq   +qa ++ l  +++
  EHU01219.1  93 SLSKRTAQ-VMMQASLKYLSPKLE 115
                 56666666.344455555555544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
        BST2  18 vtrlLerqLtqaqeslreaeaqaatcnqtvvtLkasLekeka.qsqkqqakvqelqgeikkLnq 80 
                 ++r L++ L++a+e+ + ++   a  n+ + +L+  Lek+   q  k  ++v++l+ e++ L+ 
  EHU01219.1 161 TSRELKAALREARETNAAQQRVLADKNEKIDSLSTKLEKKSRiQPPKPDEEVKKLRAEVTALAV 224
                 5677888888888888888888888888888888888776542556777888888888888765 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   8.8e+03      21      24 ..      96      99 ..      57     136 .. 0.62
   2 ?   10.3   3.1    0.0002      0.71      53     115 ..     161     220 ..     152     225 .. 0.76
   3 ?   -2.5   0.0       1.7   6.2e+03       4      22 ..     251     269 ..     250     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
     DUF1690 21 ketd 24
                k t 
  EHU01219.1 96 KRTA 99
                2222 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0002
     DUF1690  53 tlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeeklpeeveeareevv 115
                 t ++++++l ++  ++     ++   +  neki++L++kle+ ++ +  k +eev++ r+ev+
  EHU01219.1 161 TSRELKAALREARETNA---AQQRVLADKNEKIDSLSTKLEKKSRIQPPKPDEEVKKLRAEVT 220
                 45555566655555555...6777788889************77777777799*******997 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
     DUF1690   4 etpiqfSqslvsqLesske 22 
                 +tp +f + lv qLes++ 
  EHU01219.1 251 DTPRDFMAGLVCQLESTAR 269
                 589999999*****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2292.74
//
Query:       EHU01220.1  [L=101]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-06   25.4   0.2    1.7e-05   24.5   0.2    1.4  1  HTH_IclR    IclR helix-turn-helix domain
     0.0003   20.6   0.1     0.0005   19.9   0.1    1.3  1  MarR_2      MarR family
     0.0005   19.6   0.2     0.0014   18.2   0.2    1.7  1  HTH_24      Winged helix-turn-helix DNA-binding
     0.0028   17.6   0.1     0.0061   16.5   0.1    1.7  2  HTH_Crp_2   Crp-like helix-turn-helix domain
     0.0037   17.2   0.0     0.0059   16.5   0.0    1.4  1  MarR        MarR family
     0.0068   16.4   0.2      0.011   15.8   0.2    1.3  1  HTH_20      Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   15.0   0.1      0.033   14.1   0.1    1.5  1  HTH_5       Bacterial regulatory protein, arsR family
      0.019   14.6   0.1       0.11   12.2   0.0    2.1  2  GntR        Bacterial regulatory proteins, gntR family
      0.046   13.7   0.0      0.073   13.0   0.0    1.3  1  HTH_11      HTH domain
      0.063   13.0   0.0      0.071   12.8   0.0    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
      0.074   13.7   0.1       0.16   12.7   0.0    1.5  2  RPA_C       Replication protein A C terminal


Domain annotation for each model (and alignments):
>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.2   1.1e-08   1.7e-05       4      48 ..      12      57 ..      10      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-08
                HHHHHHCT-CTTBSS.-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  4 RalaiLdalaeapqe.ltlselArrtglpkStvhRlLqtLvelGyv 48
                R l++L+al+ ++   +++ elA +++ ++++  R L+tL+e+G+ 
  EHU01220.1 12 RILRVLKALRGHALNgVSNGELASALDESPANINRALNTLIEEGLA 57
                88999999999887736***************************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.1e-07    0.0005       7      53 ..      13      59 ..       9      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.1e-07
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                ++rvL aL+ +  + ++ gela +l+ s+++++r+l+ L + GL  +
  EHU01220.1 13 ILRVLKALRGHALNGVSNGELASALDESPANINRALNTLIEEGLALK 59
                679*********9999****************************865 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   8.4e-07    0.0014      16      46 ..      26      56 ..      10      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.4e-07
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGl 46
                 + s+ eLA +l+ Sp+++nr l+ L+eeGl
  EHU01220.1 26 NGVSNGELASALDESPANINRALNTLIEEGL 56
                479***************************7 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.8e-06    0.0061      21      51 ..      27      57 ..      11      76 .. 0.78
   2 ?   -2.1   0.0       2.4     4e+03      17      28 ..      88      98 ..      69      99 .. 0.44

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.8e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkregli 51
                 +++ elAs l  ++  ++r+l+ L +egl 
  EHU01220.1 27 GVSNGELASALDESPANINRALNTLIEEGLA 57
                489**************************94 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.4
                EEEEEHHHHHHH CS
   HTH_Crp_2 17 eielpltqeelA 28
                +i   ++q+ +A
  EHU01220.1 88 RI-NEINQRVMA 98
                33.345555555 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-06    0.0059      15      46 ..      25      56 ..       7      62 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
                STTEEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        MarR 15 qgplsvseLakklgvskstvtrvldrLekkGl 46
                 ++ s+ eLa++l  s++++ r+l +L+++Gl
  EHU01220.1 25 LNGVSNGELASALDESPANINRALNTLIEEGL 56
                3455666************************8 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   6.8e-06     0.011      13      53 ..      14      56 ..      11      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.8e-06
                HHHHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20 13 rrilraL..araegltaselaerldlskntlsyHLrvLeeagL 53
                +r+l+aL  +   g++ +ela +ld s++++++ L++L e gL
  EHU01220.1 14 LRVLKALrgHALNGVSNGELASALDESPANINRALNTLIEEGL 56
                4677777999999***************************999 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     2e-05     0.033       5      45 ..      14      57 ..      11      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                HHHHHHHTT...SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  5 lkILklLae...gelcvcelaeelglsqstvShHLkkLreaGLV 45
                l++Lk+L+    +  + +ela +l+ s++++ + L+ L e+GL 
  EHU01220.1 14 LRVLKALRGhalNGVSNGELASALDESPANINRALNTLIEEGLA 57
                67888888887777899*************************95 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.7e-05      0.11      28      55 ..      31      58 ..      28      66 .. 0.88
   2 ?    0.4   0.0      0.33   5.3e+02      13      24 ..      60      71 ..      58      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.7e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        GntR 28 reLaaefgVsrttvReALrrLeaeglve 55
                 eLa++++ s   +++AL++L +egl+ 
  EHU01220.1 31 GELASALDESPANINRALNTLIEEGLAL 58
                69***********************975 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.33
                HHTTSS-TTSB- CS
        GntR 13 IlsgelrpGdkL 24
                + +g+++pG +L
  EHU01220.1 60 LDNGRFAPGVQL 71
                789******988 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.5e-05     0.073       1      53 [.      12      68 ..      12      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
      HTH_11  1 RllqilelLleargp.isgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgr...G 53
                R l +l+ L+ +  + +s  eLA  L+ S + + r + +L e g+ +  ++gr   G
  EHU01220.1 12 RILRVLKALRGHALNgVSNGELASALDESPANINRALNTLIEEGLALKLDNGRfapG 68
                56778888888888999***************************9999999885555 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.071     108     174 ..       1      80 [.       1      91 [. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
                 EE--T-TTTTHH.HHHHGGG--........HHHHHHHHHTEEEEESSHHHHHHH.....HHTTT-SEEEEEHHHHH..HS CS
  SBP_bac_11 108 vadPttspsGlaalalleaaga........qellkalekkvvklgessrqllta.....veageadagivyeseakaaen 174
                 ++ P+ts+sG+++l +l+a+ +         el+ al ++ ++   +  +l+++     +++g+ + g++ ++ a+a++n
  EHU01220.1   1 MSKPNTSSSGTRILRVLKALRGhalngvsnGELASALDESPANINRALNTLIEEglalkLDNGRFAPGVQLLQIAMAHSN 80 
                 799***************9944455555665788888888775544444444445555599********99999976644 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-05      0.16      49      96 ..       8      56 ..       1      57 [. 0.85
   2 ?   -2.0   0.0       3.6   5.9e+03      40      50 ..      82      85 ..      67      98 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.7e-05
                HHHHHHHHHHHH..SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTS CS
       RPA_C 49 alaqqvlnlikq.speseeGvhvdeiaqklrlsvndvkqavdeLsneGi 96
                   +++l ++k    +  +Gv+  e+a +l  s +++++a+++L++eG+
  EHU01220.1  8 SSGTRILRVLKAlRGHALNGVSNGELASALDESPANINRALNTLIEEGL 56
                5556788888887778889****************************96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.6
                XXXXX.XSXHH CS
       RPA_C 40 aklankgltal 50
                +        ++
  EHU01220.1 82 MA-------RA 85
                22.......22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 726.66
//
Query:       EHU01221.1  [L=46]
Description: hypothetical protein CKS_3964 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 377.74
//
Query:       EHU01222.1  [L=256]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-25   89.7   0.0      3e-25   89.4   0.0    1.1  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.7e-29     3e-25       1     249 [.      11     231 ..      11     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.7e-29
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelre 94 
                      +iGgKr l+++I  l+p   ++++vepF+G++a+ f   +  k  +inDin +l+nly+ ++k   ee++ +++ +l       +r+ +  l++
       EHU01222.1  11 WIGGKRRLAKHILPLFP--AHTCYVEPFCGAAALYFLK-TPSKIEVINDINGELVNLYR-VVKHHLEEFVRQFKWAL------VSRQIYKWLQD 94 
                      9****************..689***********98644.689999**************.99999*********433......35777777775 PP

                      HHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T CS
  MethyltransfD12  95 efnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPPYn 188
                            +++++ ++a++f+yl + +f g+ +  + g ++++   + +   + e+el+ +  +l  + ie  d ++ +++++ ++ ++Y+DPPY 
       EHU01222.1  95 TPE---ETLTDIQRAARFYYLQKQAFGGKVADHTFG-TSTTSAPRFNL-LRIEEELSMAHLRLSRTLIEHLDWHQCIERYDRPHTLFYCDPPYW 183
                      555...699********************9877777.67777777776.799****************************************** PP

                      .S...TS--GGGG.CS-HHHHHHHHHHHHHH.HHTT-EEEEEEESEESHHHHHHCTT...S CS
  MethyltransfD12 189 prqytanytlyetlafsdedevrlaevlkslsskfgvkvllsnsfkdtklfrelyksYnne 249
                      +    +  +   +  f  e   + ae+++s++     k+++s +  d+ ++r++++ +n +
       EHU01222.1 184 G----TEGY---GVEFGLENYDHMAELARSTK----GKMIISVN--DIPEMRQAFNGLNMQ 231
                      9....2222...23444444444578888886....89999999..999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2212.71
//
Query:       EHU01223.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    4.5e-06   26.6   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
    7.2e-05   22.4   0.5    7.2e-05   22.4   0.5    3.0  4  HTH_33        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
      0.097   13.2   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01223.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01223.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01223.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01223.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01223.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01223.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.2   0.0      0.95   2.1e+03      25      33 ..      95     103 ..      93     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01223.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.95
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01223.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   22.4   0.5   3.2e-08   7.2e-05       3      50 ..      75     122 ..      73     127 .. 0.91
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01223.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 3.2e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHU01223.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 122
                 69***************************************9876655 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01223.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01223.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01223.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01223.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01223.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01223.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01223.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2336.29
//
Query:       EHU01224.1  [L=74]
Description: cold shock protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-28   96.0   0.1    9.3e-28   95.9   0.1    1.0  1  CSD       'Cold-shock' DNA-binding domain
  ------ inclusion threshold ------
      0.066   13.6   0.0      0.076   13.4   0.0    1.2  1  S1        S1 RNA binding domain
      0.078   12.7   0.1      0.098   12.3   0.1    1.3  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.1   1.6e-31   9.3e-28       2      64 ..       3      65 ..       2      67 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 1.6e-31
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVt 64
                tGtVkwfn++kgfGFI +  g++d+F H+s iq+dg+r+L++gq+V F+v++g kg++A+ ++
  EHU01224.1  3 TGTVKWFNNAKGFGFICPIGGGEDIFAHYSTIQMDGYRTLKAGQQVHFDVHQGPKGNHASLIV 65
                8**********************************************************8765 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.076      16      61 ..      10      53 ..       3      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
                ET...TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEE CS
          S1 16 tk...gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvl 61
                ++   +G++  +g+g ++f + s++ +d     ++++lk G++v + v 
  EHU01224.1 10 NNakgFGFICPIGGGEDIFAHYSTIQMD-----GYRTLKAGQQVHFDVH 53
                555559999*****************99.....***********99886 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.6e-05     0.098       6      24 ..      11      29 ..       4      38 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                -SSS-EEEEECT.TEEEEE CS
      OB_RNB  6 hkkGFGFlipdegkeDifi 24
                ++kGFGF+ p +g+eDif 
  EHU01224.1 11 NAKGFGFICPIGGGEDIFA 29
                79***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 560.16
//
Query:       EHU01225.1  [L=106]
Description: regulatory protein for ClpA substrate specificity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  114.2   0.1    2.1e-33  114.0   0.1    1.1  1  ClpS      ATP-dependent Clp protease adaptor protein ClpS
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.16   12.2   0.0    1.3  1  ExbD      Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.1   2.3e-37   2.1e-33       1      80 []      23     102 ..      23     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 2.3e-37
                 XXX--EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHHHHHHHHHHHH......TT--EE CS
        ClpS   1 kepkqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtreiaetkveqverlarreghpLkvt 80 
                 k+p++Ykv+L NDd+t+mefV++vLqk+f+++ e+At++ml+vh++G+a++gv+t e+aetk++qv+++ar+++hpL +t
  EHU01225.1  23 KPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLKVHYHGKAICGVFTAEVAETKAAQVNNYARDNHHPLLCT 102
                 689**************************************************************************997 PP

>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.7e-05      0.16      71     115 ..       5      50 ..       1      64 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
        ExbD  71 ka.vsveelaqklkerkakppdkltvaikadkdvsygklvevldtl 115
                 k+ +++e la+    +  kpp+  +v+++ d+ ++++ +++vl++ 
  EHU01225.1   5 KDwLNFEHLAEGKVREELKPPSMYKVILNNDDYTPMEFVIDVLQKF 50 
                 444789999988888888888888*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 960.40
//
Query:       EHU01226.1  [L=758]
Description: ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-52  175.8   0.0    5.7e-48  163.3   0.0    2.7  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.7e-30  103.9   1.5    1.1e-29  102.5   1.5    1.8  1  AAA_lid_9        AAA lid domain
    5.5e-25   87.2   0.0    1.8e-24   85.5   0.0    2.0  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.2e-23   84.0   0.1    2.1e-12   47.6   0.0    2.9  2  AAA              ATPase family associated with various cellul
    2.5e-18   66.4   0.0    2.8e-12   46.8   0.0    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
    3.9e-16   58.9   1.0    9.9e-15   54.4   0.9    2.9  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.2e-11   45.3   6.1    3.8e-06   27.4   0.2    4.1  3  AAA_16           AAA ATPase domain
    4.1e-11   42.9   0.1    0.00014   21.6   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    1.1e-10   41.3   0.0    1.4e-07   31.1   0.0    3.7  3  TniB             Bacterial TniB protein
      3e-07   30.8   4.9      0.045   14.0   0.1    4.7  3  AAA_22           AAA domain
    7.1e-07   29.4   0.0      0.021   14.8   0.0    3.6  3  ResIII           Type III restriction enzyme, res subunit
    1.9e-06   27.7   0.3       0.39   10.4   0.0    4.4  4  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.8e-06   26.6   0.0     0.0074   16.3   0.0    2.6  2  AAA_14           AAA domain
    2.1e-05   24.1   0.0       0.24   10.9   0.0    2.8  2  AAA_7            P-loop containing dynein motor region
    2.5e-05   24.8   0.2      0.051   14.1   0.0    3.4  3  AAA_18           AAA domain
    3.2e-05   23.7   0.0      0.067   12.9   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    5.7e-05   22.5   0.2       0.37    9.9   0.0    2.8  2  TIP49            TIP49 P-loop domain
     0.0002   20.4   0.0    0.00048   19.2   0.0    1.6  1  AAA_6            Hydrolytic ATP binding site of dynein motor 
    0.00022   20.9   0.6       0.34   10.4   0.0    2.9  2  AAA_25           AAA domain
    0.00022   21.1   0.1     0.0031   17.4   0.1    2.7  2  AAA_3            ATPase family associated with various cellul
    0.00036   20.7   0.0      0.088   13.0   0.0    2.8  2  AAA_33           AAA domain
      0.001   19.1   0.1       0.45   10.5   0.1    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0016   18.8   0.0        1.9    8.9   0.0    2.7  2  RNA_helicase     RNA helicase
     0.0025   17.7   0.0        1.3    8.9   0.0    2.8  2  RsgA_GTPase      RsgA GTPase
     0.0036   16.7   1.6        8.9    5.6   0.0    4.1  4  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0075   15.6   0.4        7.3    5.8   0.0    3.7  3  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.011   15.7   0.1          2    8.5   0.0    2.7  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.019   15.5   1.8        1.5    9.3   0.1    3.3  3  AAA_23           AAA domain
      0.019   14.7   0.0        3.1    7.6   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
      0.029   14.3   0.7        0.3   11.0   0.0    2.7  3  NACHT            NACHT domain
      0.035   13.5   0.0       0.14   11.5   0.0    2.0  2  IPT              Isopentenyl transferase
      0.039   13.7   0.1        2.5    7.9   0.0    3.6  4  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.046   13.6   0.0        1.3    8.9   0.0    2.6  2  Rad17            Rad17 P-loop domain
      0.069   12.8   0.2        8.4    6.0   0.2    2.6  2  SRP54            SRP54-type protein, GTPase domain
      0.076   12.8   0.9         14    5.4   0.0    3.4  3  DEAD             DEAD/DEAH box helicase
        0.1   12.1   0.0         14    5.1   0.0    2.4  2  Hpr_kinase_C     HPr Serine kinase C-terminal domain
       0.13   11.7   0.1         10    5.5   0.0    2.4  2  ParA             NUBPL iron-transfer P-loop NTPase


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0016      0.78       4      89 ..     207     299 ..     204     330 .. 0.65
   2 !  163.3   0.0   1.2e-50   5.7e-48       1     171 []     485     646 ..     485     646 .. 0.97

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0016
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.........EEEEETGGG----.------ CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.........ivllDEidKihpk.essgad 89 
                  + ll+g++gvGkt +a+ la  +  + + + +++d++ +    ++ +l++  +   ++ ++++            i+++DEi  i      sg +
  EHU01226.1 207 NNPLLVGESGVGKTAIAEGLAWRIV-QGDVPEVMKDCTIYSL--DIGSLLAGTKYRGDFEKRFKALLkqleqdnssILFIDEIHTIIGAgAASGGQ 299
                 567899**************98886.6777777777777777..44444444444444443333333444444455*******9988754444444 PP

  == domain 2  score: 163.3 bits;  conditional E-value: 1.2e-50
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 +p++s+l++gptgvGkte++ +la+ l +    +l r+d+se++e    +h+vsrligappgyvg+++gG            +vllDEi+K+hp     
  EHU01226.1 485 KPVGSFLFAGPTGVGKTEVTVQLAKALGI----ELLRFDMSEYME----RHTVSRLIGAPPGYVGFDQGGlltdavikhphaVVLLDEIEKAHP----- 570
                 5899************************9....************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq++++g ltd++grk d++n++++mt++ g+++++++s      +++ +++++ee+kk ++pE+ +Rl+ i
  EHU01226.1 571 ------DVFNLLLQVMDNGMLTDNNGRKADFRNVVLVMTTNAGVRETERKSI--GLIHQDNSTDAMEEIKKIFTPEFRNRLDNI 646
                 ......*******************************************666..5889999999*****************975 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   1.5   2.2e-32   1.1e-29       1     100 [.     349     451 ..     349     455 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.2e-32
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpee...leklekelaklekekealekeeekek 96 
                 s+eet++iL+glk kye+hH+v+++ +a++aav+l+ +Yi+dr+lPdkAID++Dea+ar+rl   sk+++   ++++e+ +a++ +  e+ +++++++ 
  EHU01226.1 349 SVEETVQILNGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKtvnVADIETVVARIARIPEQSVSATDRDT 447
                 689**********************************************************99877766555599999999*99999999999988877 PP

   AAA_lid_9  97 aerl 100
                  ++l
  EHU01226.1 448 LKNL 451
                 6665 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   3.8e-27   1.8e-24       1      81 []     652     732 ..     652     732 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 3.8e-27
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    L+ + ++++vd+++ +l+++l ++gv+lev+dea+d+laekgyd+++GARp+ r++q+ +++pla+e+l+g l++g++v v
     EHU01226.1 652 LSTDVIHQVVDKFIVELQAQLDAKGVSLEVSDEARDWLAEKGYDKAMGARPMARTVQESLKKPLANELLFGSLVDGGSVSV 732
                    7899***********************************************************************999875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   4.3e-15   2.1e-12       2     112 ..     210     326 ..     209     346 .. 0.74
   2 !   33.2   0.0   1.2e-10     6e-08       2     111 ..     491     606 ..     490     618 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4.3e-15
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 ll+G  G+GKT++a+ +a  +          + ++++++  +ll   ky g+ ek++++l+k++++ +  silfiDEi+ ++++   ++s+ + +++n 
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWRIvqgdvpevmkDCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDN-SSILFIDEIHTIIGAG--AASGGQVDAANL 305
                 89******************7665555544448899999999997778****************9998.9*************99..555555555555 PP

                 HHHHHHHTTTSSSTEEEEEEESS..G CS
         AAA  89 Llteldgvkkkeskvivigatnr..p 112
                 + + l+  k     + v+g t++   
  EHU01226.1 306 IKPLLSSGK-----IRVMGSTTYqeF 326
                 555554443.....456666666453 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 1.2e-10
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvn 87 
                 l+ Gp G+GKT +  ++ak lg+e+l++++se ++             yvg  +    +l+++a  k  p  ++++DEi++ +++             n
  EHU01226.1 491 LFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERhtvsrligappgYVGFDQG---GLLTDAVIKH-PhAVVLLDEIEKAHPDV-----------FN 574
                 89********************************7789***99998876664443...4455554444.559**********9999...........88 PP

                 HHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  88 qLlteldgvkkk........eskvivigatnr 111
                  Ll+++d+             ++v+++++tn 
  EHU01226.1 575 LLLQVMDNGMLTdnngrkadFRNVVLVMTTNA 606
                 88888887766666777777677999999996 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.5e-06    0.0046       3      76 ..     210     288 ..     208     340 .. 0.84
   2 !   46.8   0.0   5.8e-15   2.8e-12       2     124 ..     490     608 ..     489     618 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.5e-06
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--...........--------..G-SEEEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar..egeilvlDEver 76 
                 lLvG++G+gK+ +ae la ++ +  v +v+    + + d+   +  +   g+ + + ++l ++ +  +++il++DE+++
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWRIvQGDVPEVMKDCTIYSLDIGSLLAGTkyRGDFEKRFKALLKQLEqdNSSILFIDEIHT 288
                 8********************9777766665555544444333332255899999999999999999**********96 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 5.8e-15
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------...G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar...egeilvlDEveraesevlnsLlslleerrllle 97 
                 +l  Gp+G+gK+e++ +la+al+ e++   +++++++ ++   +   +g   + ++ l + a      ++++lDE+e+a+++v+n Ll+++++  l  +
  EHU01226.1 490 FLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVikhPHAVVLLDEIEKAHPDVFNLLLQVMDNGMLT-D 587
                 6889************************************9999988999999999998888778888899*********************99888.8 PP

                 -SSSEEE---......-EEEEEESS-- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld 124
                 ++g+  +++n      + +++t+n   
  EHU01226.1 588 NNGRKADFRN------VVLVMTTNAGV 608
                 8888888888......99999999765 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.9     2e-17   9.9e-15       1      52 [.      13      62 ..      13      63 .. 0.97
   2 ?    1.0   0.0      0.97   4.7e+02      18      40 ..     108     130 ..      97     136 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 2e-17
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                A++ A++++h+++++EHLLlALl+++   a+++L+++ vd+ alr+++e+++
  EHU01226.1 13 AFARAREHRHEFMTVEHLLLALLSNP--SAREALEACTVDIVALRQELEAFI 62
                7899**********************..*********************997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.97
                 HHHHHHHSCTSHHHHHHHHTTSS CS
       Clp_N  18 LLlALleeddGlaarlLkkaGvd 40 
                 +L A+++e ++ aa lL+k  v+
  EHU01226.1 108 VLVAIFSEQESQAAYLLRKHEVS 130
                 689***************99876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   7.8e-09   3.8e-06       1     106 [.     186     291 ..     186     339 .. 0.68
   2 !   17.1   0.0   1.1e-05    0.0054       2      49 ..     459     512 ..     458     534 .. 0.88
   3 ?    0.5   0.0       1.4   6.9e+02     135     160 ..     555     581 ..     546     598 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7.8e-09
      AAA_16   1 rlvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.......ipysa.laqalareellrqlldeaes 91 
                 +l+GR++ele+  ++l+r r++ p   ll+GesGvGK+++++ l+ ++ + ++  +  +c+ ++ +       + y   + + + +  ll+ql+++ +s
  EHU01226.1 186 PLIGRDKELERTIQVLCRRRKNNP---LLVGESGVGKTAIAEGLAWRIVQGDVPEVMKDCTIYSLDigsllagTKYRGdFEKRF-K-ALLKQLEQDNSS 279
                 589******999999998888777...999***********9999777766544455555555333445555577777577777.6.888888888333 PP

      AAA_16  92 aeleawrekleeala 106
                      + +++++ ++
  EHU01226.1 280 ---ILFIDEIHTIIG 291
                 ...333333444444 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.1e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellrale 49 
                 ++G ++ +e+L++a+++ r+g +      ++ l+ G+ GvGK+ +  +l++al 
  EHU01226.1 459 VFGQDNAIEALTEAIKMSRAGLGqdrkpvGSFLFAGPTGVGKTEVTVQLAKALG 512
                 5899************99999888999******************999998876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.4
      AAA_16 135 rp.lvlvlDdlqwadeaslqllaaLlr 160
                 +p  v++lD++++a ++  +ll + ++
  EHU01226.1 555 HPhAVVLLDEIEKAHPDVFNLLLQVMD 581
                 4449************99999766555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.9e-07   0.00014       2     105 ..     188     289 ..     187     326 .. 0.85
   2 !   18.9   0.0   1.9e-06   0.00093      23     148 ..     488     611 ..     459     616 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.9e-07
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBS.SSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhe.kGaFtGAekekkGlfekadg 94 
                      ig++++l+++++ + +  + + + l++GesG+GK+ +a+ +  +  + + p v  +c+ ++ + + s L G++ +G F    k+   ++e+ + 
       EHU01226.1 188 IGRDKELERTIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMKDCTIYSLD-IGSLLAGTKyRGDFEKRFKALLKQLEQDNS 278
                      5666666666665544..44567899********************************99887.57889998648******99999******** PP

                      SEEEEETGGGS CS
  Sigma54_activat  95 GtlfLDeigel 105
                      ++lf+Dei+++
       EHU01226.1 279 SILFIDEIHTI 289
                      ********986 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.9e-06
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLl 114
                       s l  G +G+GK+ +  ++ +a      ++++++++++ e+   s+L G   G + G ++      ++ k  + +++LDei++  +++ + Ll
       EHU01226.1 488 GSFLFAGPTGVGKTEVTVQLAKA---LGIELLRFDMSEYMERHTVSRLIGAPPG-YVGFDQGGLltDAVIKHPHAVVLLDEIEKAHPDVFNLLL 577
                      56799********9988776654...557899*******************998.888766543233444556899****************** PP

                      HHHHHSEEESBTSSSEEE--EEEEEEESS-HHHH CS
  Sigma54_activat 115 rvlqegevervGsskeikvdvriiaatnedleea 148
                      +v+++g ++   ++k    +v ++++tn  ++e+
       EHU01226.1 578 QVMDNGMLTDNNGRKADFRNVVLVMTTNAGVRET 611
                      *********9999999999999*****9987765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     3e-10   1.4e-07      21     184 ..     192     345 ..     190     349 .. 0.89
   2 ?   -2.3   0.0       5.2   2.5e+03     145     171 ..     447     471 ..     445     480 .. 0.79
   3 ?    0.9   0.0      0.52   2.5e+02      33      54 ..     485     506 ..     458     512 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3e-10
        TniB  21 erLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelk 119
                 ++Le+ +++  r r +n llvG+s +GKt+i+e  a              +++  ++p+  ++  +y+  + +l a +k r + +k  ++ l+ l++ +
  EHU01226.1 192 KELERTIQVLCRRRKNNPLLVGESGVGKTAIAEGLA-------------WRIVQGDVPEVMKDCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDN 277
                 5789999999999******************98765.............56888889999*************************************** PP

        TniB 120 vrvLiiDEihnllagsark..qreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepial 184
                   +L iDEih ++ + a +  q  + n++k L    ki + +  t +e  +++++D  la+RF++i +
  EHU01226.1 278 SSILFIDEIHTIIGAGAASggQVDAANLIKPLLSSGKIRVMGSTTyQEFSNIFEKDRALARRFQKIDI 345
                 ***********99655543238889****************998846778999***********9987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.2
        TniB 145 alksLgnelkipivlvGteealralrt 171
                 +lk+Lg++lk  + ++G ++a++al++
  EHU01226.1 447 TLKNLGDRLK--MLVFGQDNAIEALTE 471
                 7999999988..577999999999876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.52
        TniB  33 krmpnlllvGdsnnGKtmivek 54 
                 k + + l++G++ +GKt +  +
  EHU01226.1 485 KPVGSFLFAGPTGVGKTEVTVQ 506
                 3346899**********98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   9.4e-05     0.045       4     112 ..     205     306 ..     202     330 .. 0.69
   2 ?    0.3   0.1       1.6   7.9e+02      19     100 ..     320     404 ..     312     409 .. 0.77
   3 !   13.0   0.3   0.00019      0.09       6     119 ..     488     591 ..     483     609 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.4e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 +++  +++GesG+GKT  ++ l+ + ++       +++    ++ ++++  +l  ++ + l   +   r++ e  ++al ++l++    ++l iDE++ 
  EHU01226.1 205 RKNNPLLVGESGVGKTAIAEGLAWRIVQG------DVP----EVMKDCTIYSL--DIGSLLAGTKY--RGDFEKRFKALLKQLEQDNS-SILFIDEIHT 288
                 5677799*************999887544......333....44455555555..55555554333..48889999999999999999.9999999999 PP

      AAA_22 103 lr.....s...eealeeL 112
                 ++     s    +a + +
  EHU01226.1 289 IIgagaaSggqVDAANLI 306
                 765554423445555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.6
      AAA_22  19 Ttllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.....ielliiDEa 100
                 +t+++++ + ++++ +    +r + + +t ps ++  ++l+ l  +++  ++  r + +++++a+e a++   +     +++ +iDEa
  EHU01226.1 320 STTYQEFSNIFEKDRA--LaRRFQKIDITEPSVEETVQILNGLKTKYEAHHDV-RYTAKAVRAAVELAVKYINDrhlpdKAIDVIDEA 404
                 6677777777754333..24578888888899999999999999999998888.8888888888887776666666688888888887 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00019
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 g+ +  G++G+GKT +  +l++ l         + e++++++++ ++    ++ + r +g +  +      +   +l++a+ ++   +++++DE+++  
  EHU01226.1 488 GSFLFAGPTGVGKTEVTVQLAKAL---------GIELLRFDMSEYME----RHTVSRLIGAPPGY---VGFDQGGLLTDAVIKHPH-AVVLLDEIEKA- 568
                 566788******************.........9**********995....55667778877777...666677889999999999.9**********. PP

      AAA_22 105 seealeeLrsllnl........s 119
                 ++++++ L + +++        +
  EHU01226.1 569 HPDVFNLLLQVMDNgmltdnngR 591
                 9*******998886666555553 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.014       6.8      12      50 ..     194     232 ..     165     238 .. 0.82
   2 ?    3.4   0.0      0.14        68     122     147 ..     267     292 ..     242     336 .. 0.80
   3 !   14.8   0.0   4.4e-05     0.021       7      48 ..     461     511 ..     456     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 
                 +e++++ l  +r+++ l++ + G+GKT +a  l++r+ +
  EHU01226.1 194 LERTIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 232
                 45555555557888999****************999865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
                 .....HHHTTT-SEEEEETGGGTTS. CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak 147
                 +   ++l++d++ +++iDE H + ++
  EHU01226.1 267 KALLKQLEQDNSSILFIDEIHTIIGA 292
                 5567889999999********98764 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 4.4e-05
                 HHHHHHHHHT............TTS...EEEEEESTTSTHHHHHHHHHHHH CS
      ResIII   7 yQeeaienlleklks......krdk...rglikmaTGtGKTlvaaklierl 48 
                  Q +aie+l e++k       +++k    +l++ +TG+GKT v ++l+++l
  EHU01226.1 461 GQDNAIEALTEAIKMsraglgQDRKpvgSFLFAGPTGVGKTEVTVQLAKAL 511
                 6999******99999999998444467799****************99876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.16        77      35      54 ..     208     227 ..     188     248 .. 0.81
   2 !    7.3   0.0    0.0073       3.6      75      96 ..     266     289 ..     258     292 .. 0.79
   3 !   10.4   0.0   0.00081      0.39      11      61 ..     461     515 ..     454     533 .. 0.78
   4 ?    0.4   0.0         1     5e+02      83     113 ..     555     585 ..     541     615 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.16
      RuvB_N  35 hvllyGpPGlGkttlakiia 54 
                   ll+G  G+Gkt++a+ +a
  EHU01226.1 208 NPLLVGESGVGKTAIAEGLA 227
                 4599***********98776 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0073
      RuvB_N  75 laalltnlee..kdvlfideihrl 96 
                 + all++le+  + +lfideih +
  EHU01226.1 266 FKALLKQLEQdnSSILFIDEIHTI 289
                 56899999862257********76 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00081
      RuvB_N  11 gqekvkeklkifieaak....kreealdhvllyGpPGlGkttlakiiakelgvkl 61 
                 gq++  e l+ +i+ ++    + ++++   l++Gp G+Gkt ++  +ak lg++l
  EHU01226.1 461 GQDNAIEALTEAIKMSRaglgQDRKPVGSFLFAGPTGVGKTEVTVQLAKALGIEL 515
                 777777777777766652222456789999********************99875 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1
      RuvB_N  83 eekdvlfideihrlsraveevlysamedfrl 113
                 +++ v+++dei + ++ v ++l + m++ +l
  EHU01226.1 555 HPHAVVLLDEIEKAHPDVFNLLLQVMDNGML 585
                 467899****************999988665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-05    0.0074       7     129 ..     211     352 ..     206     354 .. 0.71
   2 !    7.4   0.0    0.0085       4.1       8      90 ..     493     583 ..     489     591 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-05
      AAA_14   7 itGaRrvGKTtllkqlikell......vkkesilyinldderd...kkla.dpekllelileklkeekktylflDEiqev..........pewekalks 85 
                 ++G   vGKT +++ l+ +        v  +++  ++ld  ++   +k++ d+ek  +++l++l++++ ++lf+DEi+ +           ++ + +k 
  EHU01226.1 211 LVGESGVGKTAIAEGLAWRIVqgdvpeV-MKDCTIYSLDIGSLlagTKYRgDFEKRFKALLKQLEQDNSSILFIDEIHTIigagaasggqVDAANLIKP 308
                 5677789999999888866667776742.3555555666655544533334677777888888777799***********7777777777777777777 PP

      AAA_14  86 lvdegknldvivtGSnskllskeia...tslagrvaeielyplsfaE 129
                 l+ +g   ++ v GS  +   ++i      la+r ++i++   s++E
  EHU01226.1 309 LLSSG---KIRVMGSTTYQEFSNIFekdRALARRFQKIDITEPSVEE 352
                 77777...889999999988887763336788888888888777777 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0085
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe............kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  vGKT +  ql+k l     + l +++ +  ++   + +            +   l+ + + ++ + +++lDEi ++ p++++ l +++d+g
  EHU01226.1 493 AGPTGVGKTEVTVQLAKALG---IELLRFDMSEYMERH--TVSrligappgyvgfDQGGLLTDAVIKHPHAVVLLDEIEKAhPDVFNLLLQVMDNG 583
                 69999**********99888...455555555544422..21112333434443322233333322257899******987589999999999987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00049      0.24      30      53 ..     203     226 ..     193     288 .. 0.80
   2 !   10.0   0.0   0.00093      0.45      35      82 ..     489     533 ..     482     612 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
       AAA_7  30 lknkkpvllvGptGtGKtviikdl 53 
                  ++k++ llvG++G+GKt+i++ l
  EHU01226.1 203 RRRKNNPLLVGESGVGKTAIAEGL 226
                 4567789*************9875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00093
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 ++l+ GptG+GKt ++ +l k+l    +  l + +s +++ +++ ++i
  EHU01226.1 489 SFLFAGPTGVGKTEVTVQLAKALG---IELLRFDMSEYMERHTVSRLI 533
                 579****************99999...778888888888877777766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.03        15       3      22 ..     211     230 ..     210     291 .. 0.68
   2 !   14.1   0.0   0.00011     0.051       3      25 ..     492     517 ..     491     540 .. 0.78
   3 ?   -0.4   0.0       3.2   1.5e+03      73     105 ..     655     685 ..     604     687 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.03
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 l G +GvGKt +a+ L+ r 
  EHU01226.1 211 LVGESGVGKTAIAEGLAWRI 230
                 8899***********98774 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 0.00011
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...g 25 
                  +G+ GvGKt+++  L+k lg+    
  EHU01226.1 492 FAGPTGVGKTEVTVQLAKALGIellR 517
                 69*****************9654441 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 3.2
      AAA_18  73 egknlvidghlaeleseaakdikkvvLtaspee 105
                 +  + v+d +++el    +   k+v L++s+e 
  EHU01226.1 655 DVIHQVVDKFIVELQAQLDA--KGVSLEVSDEA 685
                 22222555555555544333..33899998886 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014     0.067      45      76 ..     204     235 ..     191     336 .. 0.76
   2 !    8.1   0.0    0.0043       2.1      50      76 ..     490     520 ..     485     534 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00014
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavragl 76 
                 ++k+n +l+G sGvGK+ +a  l+ + v+ ++
  EHU01226.1 204 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 235
                 689999******************99887554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0043
   IstB_IS21  50 ivllGpsGvGKs....hlaialgveavragl 76 
                 +++ Gp+GvGK+     la alg e  r ++
  EHU01226.1 490 FLFAGPTGVGKTevtvQLAKALGIELLRFDM 520
                 7899*******93333466677777666555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00076      0.37      54      93 ..     210     249 ..     195     258 .. 0.85
   2 !    9.5   0.0    0.0011      0.52      26      77 ..     459     514 ..     439     526 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00076
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
       TIP49  54 LlaGpsgtGktalaiaiskelg.edvpfvalsgsevyslev 93 
                 Ll+G+sg Gkta+a +++  +   dvp  +++   +ysl++
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWRIVqGDVP-EVMKDCTIYSLDI 249
                 899***************998835666.5688899999998 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  26 lvGqkkareaagvivelikekklaGr....avLlaGpsgtGktalaiaiskelged 77 
                 + Gq +a ea +  +++ +++    r    + L+aGp+g Gkt + + ++k+lg +
  EHU01226.1 459 VFGQDNAIEALTEAIKMSRAGLGQDRkpvgSFLFAGPTGVGKTEVTVQLAKALGIE 514
                 46899999998888888775432222222278*********************943 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.9e-07   0.00048      37      77 ..     492     532 ..     469     535 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.9e-07
       AAA_6  37 paGpagtGKtEtvkdLakalakqvvvfncsdqldykslgki 77 
                  aGp+g GKtE + +Lakal+  ++ f+ s+ ++ ++++++
  EHU01226.1 492 FAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRL 532
                 58********************************9999987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00071      0.34      37      98 ..     210     274 ..     184     310 .. 0.74
   2 !    7.4   0.1    0.0059       2.9      36      55 ..     490     509 ..     477     515 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00071
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealr 98 
                 ll+G +g+GKt++a  la  +++G+ +++      + +  +  l+  +  +  ++++R++a++++l+
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWRIVQGD-VPEvmkdcTIYSLDIGSLLAGTKYRG-DFEKRFKALLKQLE 274
                 89********************998.66666766444566666666666666.88888888888873 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0059
      AAA_25  36 allaGapgtGKttlaldlal 55 
                  l+aG++g+GKt ++++la 
  EHU01226.1 490 FLFAGPTGVGKTEVTVQLAK 509
                 589***************95 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.5   1.2e+03       3      22 ..     210     229 ..     209     246 .. 0.86
   2 !   17.4   0.1   6.3e-06    0.0031       3     113 ..     491     608 ..     489     614 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.5
       AAA_3   3 llegvPGlaktllvkalaka 22 
                 ll g  G++kt +++ la  
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWR 229
                 678899********999954 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 6.3e-06
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfan........llladeinrappktqsalleameerqvtv 93 
                 l+ g  G++kt +  +lakal++e+ r  +   +    +  ++++ +    + f +G ++++        ++l dei++a p +   ll++m++  +t 
  EHU01226.1 491 LFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTV--SRLIGAPPGYVGFDQGGLLTDavikhphaVVLLDEIEKAHPDVFNLLLQVMDNGMLTD 587
                 667888*********************998766543322..34445555556666665554322222333899***********************996 PP

       AAA_3  94 e.gethklpepflvlatqnPi 113
                 + g++ ++ +  lv++t+  +
  EHU01226.1 588 NnGRKADFRNVVLVMTTNAGV 608
                 516778899999999887655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.062        30       3      20 ..     210     227 ..     210     278 .. 0.92
   2 !   13.0   0.0   0.00018     0.088       3      32 ..     491     520 ..     490     625 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.062
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 llvG +G+GK+  ae+l+
  EHU01226.1 210 LLVGESGVGKTAIAEGLA 227
                 589************986 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00018
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdt 32 
                 l+ G+ G+GK+ +  +l+k+lg +ll+ d 
  EHU01226.1 491 LFAGPTGVGKTEVTVQLAKALGIELLRFDM 520
                 799**********************99775 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.025        12      12      42 ..     199     229 ..     188     238 .. 0.73
   2 !   10.5   0.1   0.00093      0.45      21      46 ..     480     514 ..     445     521 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.025
                 HHHHHCHTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  12 kklakalgdvilLeGdLGaGKTtlvrglaka 42 
                 + l +  ++  lL G+ G+GKT+++ gla  
  EHU01226.1 199 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 229
                 444443366789*************999865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00093
                 E.........EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  21 v.........ilLeGdLGaGKTtlvrglakalgve 46 
                 +         +l+ G+ G+GKT  + +lakalg+e
  EHU01226.1 480 LgqdrkpvgsFLFAGPTGVGKTEVTVQLAKALGIE 514
                 123334556699********************996 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.017         8       3      23 ..     211     231 ..     210     251 .. 0.78
   2 !    8.9   0.0    0.0039       1.9       2      25 ..     491     514 ..     490     532 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l+G+sg+GK+ +a+ La ++ 
    EHU01226.1 211 LVGESGVGKTAIAEGLAWRIV 231
                   79*************998877 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0039
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   ++ Gp+g+GK+ ++ +Lakal  +
    EHU01226.1 491 LFAGPTGVGKTEVTVQLAKALGIE 514
                   588****************99754 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0027       1.3      77     120 ..     184     227 ..     162     241 .. 0.69
   2 ?    5.8   0.0     0.025        12     102     140 ..     490     528 ..     443     549 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0027
                  SEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkdktsvlvGqSGvGKStLinall 120
                  +++l+ + k+ e + ++  + +++  +lvG+SGvGK+++ + l+
   EHU01226.1 184 IDPLIGRDKELERTIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 227
                  555555555444444444555567789**********9987775 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.025
                  EEEECSTTSSHHHHHHHHCTT-----S------------ CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhT 140
                   +++G++GvGK+ +  +l+  l ++      +    +hT
   EHU01226.1 490 FLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHT 528
                  689*********999999887766665555555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.1     3e+03      42      71 ..      31      60 ..      26      67 .. 0.75
   2 ?    5.6   0.0     0.018       8.9      23      63 ..     207     247 ..     189     264 .. 0.80
   3 ?    4.3   0.0     0.047        23      24      57 ..     489     526 ..     459     536 .. 0.67
   4 ?    2.5   0.0      0.17        82     106     158 ..     556     606 ..     538     654 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.1
  Mg_chelatase 42 lpsllpplseeealevakiasvagkkeeek 71
                  l +ll++ s +eale+ ++  va ++e e+
    EHU01226.1 31 LLALLSNPSAREALEACTVDIVALRQELEA 60
                  678999999999999999987776555554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllpplseeealevakiasv 63 
                    n llvG +G GKt +a+ l+  + + +  e+++  +i+s+
    EHU01226.1 207 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMKDCTIYSL 247
                   5779**************99887777777777777777765 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.047
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsll....pplseeealev 57 
                   ++l++Gp G GKt +  +l++ l     + +++e +e 
    EHU01226.1 489 SFLFAGPTGVGKTEVTVQLAKALgielLRFDMSEYMER 526
                   589**********8766665444100044444444444 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.17
  Mg_chelatase 106 hnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                    + v++LDE+ + + +v++ L + +++g +t   + +k++f  ++ lv+++N 
    EHU01226.1 556 PHAVVLLDEIEKAHPDVFNLLLQVMDNGMLT-DNNGRKADFR-NVVLVMTTNA 606
                   467999********************99887.4455667775.6777777775 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.042        21      13      40 ..     203     230 ..     191     242 .. 0.74
   2 ?    0.3   0.2      0.72   3.5e+02     126     185 ..     317     373 ..     312     428 .. 0.78
   3 ?    5.8   0.0     0.015       7.3      13      58 ..     483     527 ..     472     537 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.042
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdel 40 
                 ++r+   ll+G +G GK+++ae l+ ++
  EHU01226.1 203 RRRKNNPLLVGESGVGKTAIAEGLAWRI 230
                 56667779*************9988776 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.72
  Zeta_toxin 126 vvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresvealeeekqldrvk.ik 185
                 v+  ++ +e+S  + +dR +++    R+ ++++ + ++e+  + ++ l++++ + +++ ++
  EHU01226.1 317 VMGSTTYQEFSNIFEKDRALAR----RFQKIDITEPSVEETVQILNGLKTKYEAHHDVrYT 373
                 5555677788888888888888....88888888888998888888888888666655354 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.015
  Zeta_toxin  13 qerPk.lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 +++P+ + l +G +G GK+e+   l+++l  + + +r+d  ++ e+h
  EHU01226.1 483 DRKPVgSFLFAGPTGVGKTEVTVQLAKAL--GIELLRFDMSEYMERH 527
                 4677634567******************9..8999999998888887 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.084        41       6      21 ..     213     228 ..     210     244 .. 0.85
   2 ?    8.5   0.0    0.0041         2       6      24 ..     494     512 ..     490     520 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.084
                 SSTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLar 21 
                 + +GvGKT +a +La 
  EHU01226.1 213 GESGVGKTAIAEGLAW 228
                 68*********99985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0041
                 SSTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLarala 24 
                 +  GvGKT +++ La+al 
  EHU01226.1 494 GPTGVGKTEVTVQLAKALG 512
                 568*************996 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1     0.003       1.5      23      50 ..     210     238 ..     193     386 .. 0.79
   2 ?   -0.9   0.1         4   1.9e+03      56     115 ..     363     426 ..     323     474 .. 0.63
   3 ?    3.4   0.1      0.19        92      20      33 ..     488     501 ..     485     503 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.003
      AAA_23  23 lItGpNGaGKTTildAikl.aLygetprl 50 
                 l++G+ G GKT+i + + + +  g++p+ 
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWrIVQGDVPEV 238
                 79****************94445666655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 4
      AAA_23  56 rgfeksdveiesegkvkayveltfenkdgry.....trsiererelskkkgkttkkaklelleid 115
                 +   ++dv+ +  + v+a vel ++++++r       + i++   +++ +  +++k++ +  +i+
  EHU01226.1 363 KYEAHHDVRYTA-KAVRAAVELAVKYINDRHlpdkaIDVIDEAGARARLMPASKRKKTVNVADIE 426
                 344566776443.4777888888888888877777744444444444444444444444444443 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.19
      AAA_23  20 gltlItGpNGaGKT 33 
                 g +l+ Gp+G GKT
  EHU01226.1 488 GSFLFAGPTGVGKT 501
                 779**********9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0063       3.1      21      38 ..     205     222 ..     196     228 .. 0.80
   2 ?    4.2   0.0     0.073        35      22      36 ..     487     501 ..     481     504 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0063
      AAA_29  21 lkgatlltGpsGsGKSTl 38 
                 +k++ ll+G+sG+GK+++
  EHU01226.1 205 RKNNPLLVGESGVGKTAI 222
                 45589**********987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.073
      AAA_29  22 kgatlltGpsGsGKS 36 
                  g++l++Gp+G+GK+
  EHU01226.1 487 VGSFLFAGPTGVGKT 501
                 5789**********7 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       9.7   4.7e+03     104     154 ..      26      75 ..      17      78 .. 0.70
   2 ?   11.0   0.0   0.00061       0.3       4      33 ..     210     239 ..     209     254 .. 0.86
   3 ?   -0.2   0.0       1.7   8.2e+02       5      24 ..     492     511 ..     490     518 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.7
                 .....HHHHHCTTTTT--EEEEEEECCCHHH.HCTTSSCE..EEEE--TCCH CS
       NACHT 104 pvrtlLselirkkllpeasllltvrpralrd.leeqleeaivlevegfsesr 154
                  v++lL  l++  + +ea    tv   alr+ le  +e++  + v + se++
  EHU01226.1  26 TVEHLLLALLSNPSAREALEACTVDIVALRQeLEAFIEQT--TPVLPASEEE 75 
                 5778888888888888888888888888776666666666..6666655555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00061
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqga 33 
                 +l Ge+G+GKT+ +++la  + +g+ p+++
  EHU01226.1 210 LLVGESGVGKTAIAEGLAWRIVQGDVPEVM 239
                 589*********************999876 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.7
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                   G+ G+GKT    +la a+
  EHU01226.1 492 FAGPTGVGKTEVTVQLAKAL 511
                 579*******8888887765 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.3   2.6e+03       5      22 ..     210     227 ..     209     231 .. 0.87
   2 ?   11.5   0.0    0.0003      0.14       4      33 ..     490     519 ..     487     525 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.3
         IPT   5 lifGatttGKtaeaikla 22 
                 l++G  ++GKta a  la
  EHU01226.1 210 LLVGESGVGKTAIAEGLA 227
                 789*********998887 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0003
         IPT   4 ylifGatttGKtaeaiklaketgapvivlD 33 
                 +l  G+t++GKt+++++lak+ g+ ++  D
  EHU01226.1 490 FLFAGPTGVGKTEVTVQLAKALGIELLRFD 519
                 5788*****************999887666 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.7   1.3e+03      23      45 ..     210     232 ..     199     243 .. 0.82
   2 ?   -1.9   0.1         5   2.4e+03      66     115 ..     365     428 ..     338     434 .. 0.71
   3 ?    7.9   0.0    0.0051       2.5      19      43 ..     487     511 ..     461     517 .. 0.80
   4 ?    0.1   0.0       1.2   6.1e+02     104     128 ..     557     581 ..     548     584 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.7
  DNA_pol3_delta2  23 LfeGdegigkkelalnlakallc 45 
                      L+ G++g+gk ++a  la +++ 
       EHU01226.1 210 LLVGESGVGKTAIAEGLAWRIVQ 232
                      899***********999988765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5
  DNA_pol3_delta2  66 gkhpDvivieteeker..............sikldqirelieelsrkpreskkkiiiiedaekm 115
                      + h+Dv + ++  + +                 +d i e  +++  +p   +kk + + d+e++
       EHU01226.1 365 EAHHDVRYTAKAVRAAvelavkyindrhlpDKAIDVIDEAGARARLMPASKRKKTVNVADIETV 428
                      5566666654444433455555555555555567888888899999999999999888888876 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0051
  DNA_pol3_delta2  19 ahayLfeGdegigkkelalnlakal 43 
                        ++Lf+G++g+gk e++ +lakal
       EHU01226.1 487 VGSFLFAGPTGVGKTEVTVQLAKAL 511
                      4689*******************98 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.2
  DNA_pol3_delta2 104 kkiiiiedaekmtksAaNalLktlE 128
                      + +++++++ek ++   N lL+++ 
       EHU01226.1 557 HAVVLLDEIEKAHPDVFNLLLQVMD 581
                      56999****************9875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.42   2.1e+02      38      67 ..     199     228 ..     192     281 .. 0.84
   2 ?    8.9   0.0    0.0027       1.3      47      74 ..     489     516 ..     464     526 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.42
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvkvLsk 67 
                 +vL +r+k+  L+ G sG gk+ + + L+ 
  EHU01226.1 199 QVLCRRRKNNPLLVGESGVGKTAIAEGLAW 228
                 7899999999999********998887774 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0027
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklr 74 
                   L +GP+G gk+ v   L+k lgi+l 
  EHU01226.1 489 SFLFAGPTGVGKTEVTVQLAKALGIELL 516
                 6899********************9875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.067        32       4      27 ..     209     232 ..     206     249 .. 0.81
   2 ?    6.0   0.2     0.017       8.4       4      25 ..     490     511 ..     488     516 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.067
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                  llvG  G+GKT  +  La ++ +
  EHU01226.1 209 PLLVGESGVGKTAIAEGLAWRIVQ 232
                 58***********99999977655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.017
                 EEEEESTTSSHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaall 25 
                 +l++G++G+GKT  + +La+ l
  EHU01226.1 490 FLFAGPTGVGKTEVTVQLAKAL 511
                 699***************9875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.086        42      14      72 ..     206     365 ..     195     400 .. 0.66
   2 ?    5.4   0.0     0.028        14      15      32 ..     488     505 ..     462     515 .. 0.80
   3 ?   -2.6   0.0       8.1   3.9e+03     112     140 ..     665     696 ..     650     714 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.086
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS............................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx............................................................... RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyet..kgktg............................................................... 47 
                 +++ l+ +e G GKT+++   + +iv  +  +                                                                   
  EHU01226.1 206 KNNPLLVGESGVGKTAIAEGLAWRIVQGDvpE---Vmkdctiysldigsllagtkyrgdfekrfkallkqleqdnssilfideihtiigagaasggqvd 301
                 45677888999999999888888777432431...0334445666666666666666666677777777777777777777777777777777777777 PP

                 .......................................-EEEEEESSHHHHHHHHHHHHHHTT CS
                 .......................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  48 .......................................pkalivePtreLaeqtlnnlkkfkk 72 
                                                         k+ i eP+ e + q+ln lk+  +
  EHU01226.1 302 aanlikpllssgkirvmgsttyqefsnifekdralarrfQKIDITEPSVEETVQILNGLKTKYE 365
                 7777777777777777777777777777777777777766666777777777777776666555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.028
                 CEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlafl 32 
                 g++l a++TG GKT++ +
  EHU01226.1 488 GSFLFAGPTGVGKTEVTV 505
                 67899*********9965 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.1
                 H..HCTSSHCTTEEEEEEETHHHHHHT.TTHH CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD 112 l..stgklnlsqvrflVlDEadrlldq.gfsd 140
                 +   + +l+ + v++ V DEa   l + g+ +
  EHU01226.1 665 IveLQAQLDAKGVSLEVSDEARDWLAEkGYDK 696
                 23445678899999999999965555436554 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        14      22      39 ..     210     227 ..     208     242 .. 0.83
   2 ?    4.3   0.0     0.053        26      22      52 ..     491     522 ..     486     540 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.03
                   EEEESTCHHHHHHHHHHH CS
  Hpr_kinase_C  22 LitGesgvGKselaleLi 39 
                   L++GesgvGK+ +a  L 
    EHU01226.1 210 LLVGESGVGKTAIAEGLA 227
                   89**********998774 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.053
                   EEEESTCHHHHHHHHHHHTT.T-EEEEESSEE CS
  Hpr_kinase_C  22 LitGesgvGKselaleLikr.ghrLvaDDave 52 
                   L  G  gvGK+e++++L k  g  L+  D+ e
    EHU01226.1 491 LFAGPTGVGKTEVTVQLAKAlGIELLRFDMSE 522
                   789*************9874366666655555 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.089        43      11      53 ..     213     255 ..     208     282 .. 0.83
   2 ?    5.5   0.0     0.021        10      11      28 ..     494     511 ..     490     518 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.089
        ParA  11 gKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgv 53 
                 g  GVGK+ +a  lA+ + + ++   + D  iy  +i +ll  
  EHU01226.1 213 GESGVGKTAIAEGLAWRIVQGDVPEVMKDCTIYSLDIGSLLAG 255
                 778***************9999988888998888888887765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.021
        ParA  11 gKGGVGKStvavnlAlaL 28 
                 g  GVGK+ v+v+lA aL
  EHU01226.1 494 GPTGVGKTEVTVQLAKAL 511
                 667************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.79u 0.24s 00:00:01.03 Elapsed: 00:00:00.41
# Mc/sec: 5558.88
//
Query:       EHU01227.1  [L=72]
Description: translation initiation factor IF-1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-27   94.3   0.0      3e-27   94.2   0.0    1.0  1  eIF-1a         Translation initiation factor 1A / IF-1
    3.8e-05   23.3   0.0    4.6e-05   23.1   0.0    1.3  1  RsgA_N         RsgA N-terminal domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.033   14.1   0.0    1.9  1  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
       0.02   15.2   0.1      0.024   15.0   0.1    1.2  1  S1             S1 RNA binding domain
       0.09   12.6   0.0        5.2    7.0   0.0    2.3  2  Myosin_N       Myosin N-terminal SH3-like domain


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   8.4e-31     3e-27       1      64 []       7      70 ..       7      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 8.4e-31
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHH.CT----TT-EEEEEE-TT-TTEEEEES- CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfR.nkiwikrGdyVlVelspydltkGrIvyr 64
                +e+ g+V+  l+n +frVel +ng+ v+a+i+gk+R n+i+i+ Gd+V+Vel+pydl+kGrIv+r
  EHU01227.1  7 IEMQGTVLDTLPNTMFRVEL-ENGHVVTAHISGKMRkNYIRILTGDKVTVELTPYDLSKGRIVFR 70
                699*****************.59****************************************98 PP

>> RsgA_N  RsgA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.3e-08   4.6e-05      10      47 ..      20      58 ..      10      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.3e-08
      RsgA_N 10 gfYyVk.eegeiyecRaRGkFRkkkisplVGDrVefele 47
                 ++ V+ e+g+++++ + Gk Rk+ i++l GD+V +el+
  EHU01227.1 20 TMFRVElENGHVVTAHISGKMRKNYIRILTGDKVTVELT 58
                5789986788*************************9986 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.1e-06     0.033      36      57 ..      49      70 ..       8      72 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.1e-06
  RNase_II_C_S1 36 lGervrVrLveADvatrrvrFe 57
                    G++v+V+L+  D+ ++r+ F+
     EHU01227.1 49 TGDKVTVELTPYDLSKGRIVFR 70
                   59*******************7 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   6.8e-06     0.024       8      72 ..       9      69 ..       3      72 .] 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.8e-06
                EEEEEEEEET.TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1  8 veGeVtsvtk.gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriil 72
                ++G+V +  +   ++Vel+ng+ +  ++s  +r+     ++ ++  Gd+v v+++  d  ++ri++
  EHU01227.1  9 MQGTVLDTLPnTMFRVELENGHVVTAHISGKMRK-----NYIRILTGDKVTVELTPYDLSKGRIVF 69
                678888887768899****888888888877777.....*************************98 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.015        53      24      38 ..      20      34 ..       9      36 .. 0.73
   2 ?    7.0   0.0    0.0014       5.2      22      31 ..      49      58 ..      45      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.015
                SEEEEEETTSEEEEE CS
    Myosin_N 24 dkvtVetedGktvtV 38
                 ++ Ve+e+G  vt 
  EHU01227.1 20 TMFRVELENGHVVTA 34
                4599******99996 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0014
                ESSEEEEEET CS
    Myosin_N 22 eGdkvtVete 31
                +GdkvtVe++
  EHU01227.1 49 TGDKVTVELT 58
                7*******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 585.71
//
Query:       EHU01228.1  [L=230]
Description: leucyl/phenylalanyl-tRNA-protein transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-69  231.9   0.0    3.5e-69  231.7   0.0    1.0  1  Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase


Domain annotation for each model (and alignments):
>> Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.0   1.9e-73   3.5e-69       1     168 [.      35     202 ..      35     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 1.9e-73
  Leu_Phe_trans   1 perlleayaqgifpwaeeeepilwwspdpRavleldelhisrslrktlrkkefevtidkaFeeVieacaekkrregtWiteeiieaYteLheagla 96 
                    p+rll+ay+qgifpw++ ++pilwwspdpRavl+++++h+srs++++ +++ ++vt+++aF +V+++ca   r+egtWit e+++a+++L+e+g+a
     EHU01228.1  35 PARLLSAYQQGIFPWFSPGDPILWWSPDPRAVLFPTQFHLSRSMKRFHQQSPYRVTMNEAFGDVVDGCAL-GREEGTWITFEVKRAWQKLYELGHA 129
                    579******************************************************************5.5777********************* PP

  Leu_Phe_trans  97 hSvEvw.egeLvGGlyGvalgkvffgeSmFsrksdaSkvalvalvellkekgfeliDcqvetphlaslGakei 168
                    hS+Evw +++L+GG+yG+alg++f+geSmFs +++aSk+al+ +++++ ++g +l+Dcq+ +ph+aslGa+ei
     EHU01228.1 130 HSIEVWrDQTLAGGMYGLALGQIFCGESMFSLQPNASKTALLVFCQHFIKHGGQLVDCQILNPHTASLGAVEI 202
                    ******889**************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1797.98
//
Query:       EHU01229.1  [L=576]
Description: transport ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-30  106.6   0.0    2.7e-30  105.6   0.0    1.5  1  ABC_tran      ABC transporter
    1.3e-06   28.3   6.5    1.3e-06   28.3   6.5    2.5  2  ABC_membrane  ABC transporter transmembrane region
    4.6e-06   26.5   0.1    1.4e-05   24.9   0.1    1.8  1  AAA_30        AAA domain
    0.00052   20.4   0.1    0.00052   20.4   0.1    2.8  3  AAA_16        AAA ATPase domain
    0.00062   19.3   0.0      0.019   14.4   0.0    2.0  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00095   19.1   0.1        1.1    9.0   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0023   17.9   0.0     0.0053   16.8   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0075   16.2   0.0      0.095   12.6   0.0    2.3  2  Rad17         Rad17 P-loop domain
     0.0079   16.7   0.0      0.023   15.2   0.0    1.8  1  AAA_18        AAA domain
  ------ inclusion threshold ------
       0.01   15.8   1.9      0.032   14.1   0.0    2.5  3  NACHT         NACHT domain
      0.012   15.2   0.0      0.077   12.6   0.0    2.2  2  AAA_25        AAA domain
      0.017   15.0   0.0      0.037   13.9   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
      0.025   14.8   0.8       0.34   11.1   0.1    2.4  2  AAA_28        AAA domain
      0.026   14.2   0.0      0.078   12.7   0.0    1.8  1  AAA_29        P-loop containing region of AAA domain
      0.031   14.1   1.5       0.11   12.3   1.5    2.0  1  DUF5337       Family of unknown function (DUF5337)
      0.052   13.8   0.0       0.17   12.1   0.0    2.0  1  AAA_22        AAA domain
       0.12   12.5   0.0        0.2   11.7   0.0    1.3  1  DUF87         Helicase HerA, central domain
       0.12   12.4   0.0       0.29   11.2   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
       0.12   12.7   0.0       0.23   11.8   0.0    1.4  1  RNA_helicase  RNA helicase
       0.15   12.5   0.6       0.92   10.0   0.1    2.0  2  AAA_23        AAA domain
       0.16   11.4   0.1       0.16   11.4   0.1    2.3  2  DUF1129       Protein of unknown function (DUF1129)
       0.19   11.2   0.0       0.77    9.3   0.0    1.8  2  AAA_7         P-loop containing dynein motor region
       0.68   10.0   4.8       0.67   10.1   2.4    2.0  2  DUF4337       Domain of unknown function (DUF4337)
       0.88    8.3   0.0       0.88    8.3   0.0    2.7  3  DUF2207       Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   3.7e-33   2.7e-30       1     136 [.     356     503 ..     356     504 .. 0.92

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 3.7e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l++ sl++k+ge++a++G++G+GKStLl ll++  + ++Gei l++ +l + ++ +lr++i+v++q  ++f+++ +r+n       +sd+ +e+al + 
  EHU01229.1 356 LDQFSLTMKAGERIALLGPTGCGKSTLLGLLTRAWEAQQGEIVLNSVPLADWDEAQLRQRISVVTQRVHVFSQT-LRDNlllacptASDAMLENALVQT 453
                 7899*********************************************************************9.**********98889999999998 PP

                 TTGG......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 gl+         +  ++++++ LSgG+ +r+a+ara+l + +l+llDEpt
  EHU01229.1 454 GLQClleneeGLNAWLGEGGRPLSGGELRRLAIARAMLHNGDLWLLDEPT 503
                 88884444445555666666*****************************9 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   6.5   1.8e-09   1.3e-06      44     267 ..      63     286 ..      22     292 .. 0.85
   2 ?   -2.6   0.1       4.6   3.4e+03      54      77 ..     512     535 ..     512     538 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.8e-09
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHS CS
  ABC_membrane  44 sllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylg 140
                   +  + ++++ ++++ ++   + + +  r+  +lr  +f +++ ++ +     +  +ll+r+  dv++l+ ++ + l+ ++ +++++v++ + + ++ 
    EHU01229.1  63 AAGVRGAAITRTAARYFERLVSHDATFRVLQHLRVFTFSRLIALSPGQLALFRQADLLNRFVGDVDTLDHLYLRVLSPLLGAFIVIVVVTAGLSLID 159
                   555556666666666666666666888999999999************************************************************* PP

                   HHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 141 wkltlvllai.lpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgl 236
                     l+lvl +i l l++l+  ++ ++  +  +    ++++    +   l g   + ++g+ ++ + + ++  ++++ a+++  ++++l ++ + l++ 
    EHU01229.1 160 LHLALVLGGIlLTLLCLFPPLFYRLGAPTGIAIARQRSRWREQLMHWLAGQAELTLYGNAARWRARLDEDEQQWQDAQRQQERLQALAQSLLLLCSG 256
                   *****9876516799********************************************************************************** PP

                   HHHHHHHHHHHHHHHTTSSTHHHHHHHHHHH CS
  ABC_membrane 237 lsyalalwfGttlvisgelsvgdlvvflslf 267
                   l +++ lw+++t + ++   +g l++++++ 
    EHU01229.1 257 LTVTALLWLSATSIAQQ-QLPGPLIALVVFC 286
                   **************885.5577777777775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.6
                   HHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  54 qfilallqsyllnvtgerlskrlr 77 
                   q ilallq+ +  +t + +++rlr
    EHU01229.1 512 QQILALLQQITTGKTVIMVTHRLR 535
                   579999***************999 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   1.9e-08   1.4e-05      21     122 ..     369     530 ..     358     533 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.9e-08
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglA.ptgkaAkv.Laeelgieastiakllkrlk.................................... 81 
                  +l Gp G GK+t+l+ l++awea++g++++ + p +   ++ L++ + + +++++ + ++l+                                    
  EHU01229.1 369 IALLGPTGCGKSTLLGLLTRAWEAQQGEIVLNSvPLADWDEAqLRQRISVVTQRVHVFSQTLRdnlllacptasdamlenalvqtglqclleneeglna 467
                 5788*********************6555543314444433349***************999999********************************** PP

      AAA_30  82 ...................grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                                    +ra l++g+l++ DE          +q+ all+++++ g +vi+v
  EHU01229.1 468 wlgeggrplsggelrrlaiARAMLHNGDLWLLDEPTEGldatTEQQILALLQQITT-GKTVIMV 530
                 *****************9988999999*******7643333356677777777777.8888887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.5       1.8   1.4e+03      93     127 ..     218     251 ..     183     265 .. 0.60
   2 ?   -2.5   0.0       7.8   5.8e+03      39      88 ..     261     320 ..     255     334 .. 0.58
   3 !   20.4   0.1   6.9e-07   0.00052      22     107 ..     364     472 ..     349     530 .. 0.52

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.8
      AAA_16  93 eleawrekleealaavpelagaeasrllellkrll 127
                 ++++wr++l+e  + + ++a  + +rl +l ++ll
  EHU01229.1 218 NAARWRARLDEDEQ-QWQDAQRQQERLQALAQSLL 251
                 55666666666555.33333333355555544444 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.8
      AAA_16  39 slvrellralekd.........ggiflrgkcdql.esaipysalaqalareellrqllde 88 
                 +l++  ++++ ++          ++++ + ++ l + a ++++l q++++ + ++++ d+
  EHU01229.1 261 ALLWLSATSIAQQqlpgplialVVFCALAAFEALaPIASAFLPLSQVITAAQRVNDVIDQ 320
                 555555555555556555554323335555555543334445566666666677776666 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 6.9e-07
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd..ggif...lrgkcdqlesa......ipysa.laqalareellrqlldeaesaeleawrekleeala.. 106
                   +e + l G+ G+GKs+l+  l ra+e++  ++++     +++d+ +        + +++ + q+l r+ ll +  +++++ + +a            
  EHU01229.1 364 KAGERIALLGPTGCGKSTLLGLLTRAWEAQqgEIVLnsvPLADWDEAQLRqrisvvTQRVHvFSQTL-RDNLLLACPTASDAMLENA---------Lvq 452
                 3447899*********************996422222222233333311111122222222244444.4444444444433332222.........122 PP

      AAA_16 107 ...................a 107
                                     
  EHU01229.1 453 tglqclleneeglnawlgeG 472
                 22223334555555555553 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.14     1e+02      27      41 ..     369     383 ..     354     387 .. 0.84
   2 !   14.4   0.0   2.5e-05     0.019     137     209 ..     476     544 ..     441     552 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.14
                 EEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnll 41 
                  a++Gp G+GKs ll
  EHU01229.1 369 IALLGPTGCGKSTLL 383
                 5799********986 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.5e-05
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                 LSgGe   +a    +A  + +   l+llDe    LD++  +++  ll++ ++   +i++++r + l+++d+++
  EHU01229.1 476 LSGGELRRLA----IARAMLHNGDLWLLDEPTEGLDATTEQQILALLQQITTGKTVIMVTHRLRGLAQMDRIC 544
                 7888865433....4566778889*******************************************999986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0015       1.1       3      23 ..     370     390 ..     369     416 .. 0.83
   2 !    7.7   0.1    0.0036       2.7     241     297 ..     480     532 ..     474     534 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0015
      AAA_21   3 vliGpNgsGKSnLLdaldlla 23 
                 +l Gp g+GKS+LL +l  ++
  EHU01229.1 370 ALLGPTGCGKSTLLGLLTRAW 390
                 799************998775 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0036
      AAA_21 241 tkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  +r la++ a+l     g+l l+DEp  gL+      +l ll + ++ g  vi++TH
  EHU01229.1 480 ELRRLAIARAMLHN---GDLWLLDEPTEGLDATTEQQILALLQQITT-GKTVIMVTH 532
                 55554555555544...499**********************88888.9******** PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.1e-06    0.0053       3      48 ..     370     419 ..     368     432 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.1e-06
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--...TT--HHHHH--B--. CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqlt...rdtteedlkgrreik 48 
                  L+Gp+G+gKs+l   l +a   ++ e+v+++   +d+ e++l++r+++ 
  EHU01229.1 370 ALLGPTGCGKSTLLGLLTRAWeAQQGEIVLNSvplADWDEAQLRQRISVV 419
                 59*******************8777777777666689*********9984 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.55   4.1e+02     135     173 ..     113     152 ..      72     158 .. 0.75
   2 !   12.6   0.0   0.00013     0.095      40      82 ..     361     404 ..     353     434 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.55
       Rad17 135 lilvedlPnkfyrdsdalrevirkylr.ssealplilvit 173
                 l    dl n+f +d+d+l ++ +++l    +a+ +i+v+t
  EHU01229.1 113 LFRQADLLNRFVGDVDTLDHLYLRVLSpLLGAFIVIVVVT 152
                 55557999************99988872457777777776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00013
       Rad17  40 LesrkkriLLisGPsGCgkstvvkvLskelgiklrew.lnpvsl 82 
                 L  +  + + + GP+GCgkst +  L++    +  e  ln+v l
  EHU01229.1 361 LTMKAGERIALLGPTGCGKSTLLGLLTRAWEAQQGEIvLNSVPL 404
                 544443334456**************998877766541466554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.1e-05     0.023       1      67 [.     369     433 ..     369     463 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.1e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 
                 I+l G+ G+GK+tl   L +      + ++++ ++ +l ++d+++l++   ++++++++ +++l+ n
  EHU01229.1 369 IALLGPTGCGKSTLLGLLTRAW--EAQQGEIVLNSVPLADWDEAQLRQRISVVTQRVHVFSQTLRDN 433
                 89****************9998..9999999999999999999955555555555555555555544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.1   8.3e+02     100     124 ..     234     258 ..     225     293 .. 0.51
   2 ?   14.1   0.0   4.3e-05     0.032       2      29 ..     368     395 ..     367     418 .. 0.90
   3 ?   -2.4   0.0       5.4     4e+03      91     135 ..     500     540 ..     499     545 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
                 .........HHHHHCTTTTT--EEE CS
       NACHT 100 kekqpvrtlLselirkkllpeasll 124
                 +++q+ ++ L+ l +  ll ++ l 
  EHU01229.1 234 QDAQRQQERLQALAQSLLLLCSGLT 258
                 2233333333333333333333333 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.3e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                  ++l G+ G+GK+tLl  l +aw +++ 
  EHU01229.1 368 RIALLGPTGCGKSTLLGLLTRAWEAQQG 395
                 5899*******************98875 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.4
                 TT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHH CS
       NACHT  91 DelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdl 135
                 De  + l++ ++q+    +  l+++    ++ +++t r r+l ++
  EHU01229.1 500 DEPTEGLDATTEQQ----ILALLQQITTGKTVIMVTHRLRGLAQM 540
                 55555555544444....445555555557888888887777655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001     0.077      28      57 ..     361     390 ..     334     445 .. 0.78
   2 ?   -1.0   0.0       1.5   1.1e+03     162     188 ..     508     532 ..     496     533 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
      AAA_25  28 gllpagelallaGapgtGKttlaldlalav 57 
                   + age ++l G++g+GK+tl+  l  a+
  EHU01229.1 361 LTMKAGERIALLGPTGCGKSTLLGLLTRAW 390
                 46789*****************97777766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
      AAA_25 162 nsdvgalvealeriarrtgaavllvhH 188
                 ++ ++++++ l++i   tg +v++v H
  EHU01229.1 508 ATTEQQILALLQQI--TTGKTVIMVTH 532
                 45568888888888..7999***9999 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     5e-05     0.037      99     130 ..     366     397 ..     351     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5e-05
                  TSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgev 130
                  ++ ++l+G++G GKStL+  l+   e++ ge+
   EHU01229.1 366 GERIALLGPTGCGKSTLLGLLTRAWEAQQGEI 397
                  47889****************99988888887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.41     3e+02      38      95 ..     218     271 ..     200     287 .. 0.65
   2 ?   11.1   0.1   0.00046      0.34       1      21 [.     368     388 ..     368     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
      AAA_28  38 klakgedalpwvedllafaervleeqleeeaaa..aankvlfcDrglldtlaYaraygge 95 
                 ++a+++        l + +++  ++q+++e+ +  a++ +l+c   +++ l ++ a  ++
  EHU01229.1 218 NAARWRAR------LDEDEQQWQDAQRQQERLQalAQSLLLLCSGLTVTALLWLSATSIA 271
                 33444443......4444444444455444444348899999999888888888777665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00046
      AAA_28   1 kivitGgestGKTtlleaLaa 21 
                 +i+++G+ ++GK+tll  L++
  EHU01229.1 368 RIALLGPTGCGKSTLLGLLTR 388
                 79**************99985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001     0.078      16      39 ..     360     383 ..     354     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 +++++  + + l Gp+G GKSTll
  EHU01229.1 360 SLTMKAGERIALLGPTGCGKSTLL 383
                 55666445899************8 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   0.00015      0.11      14      55 ..     251     291 ..     236     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
     DUF5337  14 rlvalviavtmllwlgaqwigeqlglsnRyalLfdLaAlAal 55 
                  l    + vt+llwl a+ i++q  l++   +L+ + AlAa+
  EHU01229.1 251 LLLCSGLTVTALLWLSATSIAQQ-QLPGPLIALVVFCALAAF 291
                 555556889***********876.7****************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00023      0.17       8      99 ..     369     501 ..     363     537 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..................erpevv..fvtlpsstsskdllrellralglelka................ 70 
                 +++ G++G+GK+tll  l++  +++  +                    +r +vv  +v + s+t +++ll +   a +  l++                
  EHU01229.1 369 IALLGPTGCGKSTLLGLLTRAWEAQ--Q-GeivlnsvpladwdeaqlrQRISVVtqRVHVFSQTLRDNLLLACPTASDAMLENalvqtglqclleneeg 464
                 7899************999986432..2.2356777777777777766555555443333333322222222222222222224444444444466666 PP

      AAA_22  71 .........erlsseell.ealeqalraravielliiDE 99 
                          ++ls  el+  a+++a+ + ++  l ++DE
  EHU01229.1 465 lnawlgeggRPLSGGELRrLAIARAMLHNGD--LWLLDE 501
                 6666666666666666665555555555555..666666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00027       0.2      24      46 ..     367     389 ..     360     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00027
       DUF87  24 rHlAilgsTGsGKSntvavLlee 46 
                 +++A lg TG GKS++ ++L + 
  EHU01229.1 367 ERIALLGPTGCGKSTLLGLLTRA 389
                 689***************99875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00039      0.29       1      25 [.     368     393 ..     368     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
                 EEEEEESTTSSHHHHHHHHHTS.TEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kai 25 
                 ++a++G +  GKStL+  lt++ +a+
  EHU01229.1 368 RIALLGPTGCGKSTLLGLLTRAwEAQ 393
                 69*****************9976554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00031      0.23       2      27 ..     370     395 ..     369     425 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00031
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklk 27 
                    l Gp+g+GKStl   L++a++ + +
    EHU01229.1 370 ALLGPTGCGKSTLLGLLTRAWEAQQG 395
                   689**************999985553 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.2   8.8e+02     138     172 ..     216     250 ..     194     269 .. 0.81
   2 ?   10.0   0.1    0.0012      0.92      24      40 ..     371     387 ..     368     390 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.2
      AAA_23 138 lgqerfeefelkdkkerleelekeleeledekkll 172
                 +g    ++ +l +++++++++++++e l++ ++ l
  EHU01229.1 216 YGNAARWRARLDEDEQQWQDAQRQQERLQALAQSL 250
                 45555788888888888888888888888877755 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0012
      AAA_23  24 ItGpNGaGKTTildAik 40 
                 + Gp+G+GK+T+l  ++
  EHU01229.1 371 LLGPTGCGKSTLLGLLT 387
                 78**********97665 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.6       1.9   1.4e+03     150     187 ..     138     175 ..     132     178 .. 0.82
   2 ?   11.4   0.1   0.00022      0.16      45     122 ..     209     288 ..     202     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
     DUF1129 150 llilllllvvwlvlftlvallpaviNpvLpplvliiig 187
                 l  ll++++v++v+++ ++l+   +  vL  + l++++
  EHU01229.1 138 LSPLLGAFIVIVVVTAGLSLIDLHLALVLGGILLTLLC 175
                 55678999999999999999999999999988887765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00022
     DUF1129  45 GktArqLygtptekaeellekkkkakkeskenpwlmalDnsLlllalfallfgilalfskkkqtas..iGlitlllvalv 122
                 G+    Lyg    + + l e++++ ++++ ++  l+al +sLlll     ++++l l  ++ ++++    li+l+++ ++
  EHU01229.1 209 GQAELTLYGNAARWRARLDEDEQQWQDAQRQQERLQALAQSLLLLCSGLTVTALLWLSATSIAQQQlpGPLIALVVFCAL 288
                 666678*******************999999**********************999888877777777779999888766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0     0.001      0.77      27      58 ..     360     391 ..     355     412 .. 0.84
   2 ?   -1.5   0.0       2.1   1.6e+03      41      57 ..     520     537 ..     507     545 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkld 58 
                 +l +k++  + l GptG+GK++++  l+++ +
  EHU01229.1 360 SLTMKAGERIALLGPTGCGKSTLLGLLTRAWE 391
                 6789999***************9887777665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
       AAA_7  41 ptGtGKtviikd.llkkl 57 
                 +  tGKtvi+ +  l+ l
  EHU01229.1 520 QITTGKTVIMVThRLRGL 537
                 456899998876566555 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.4    0.0009      0.67     120     157 ..      20      57 ..      14      60 .. 0.92
   2 ?   -1.1   0.0       2.5   1.8e+03      75     109 ..     226     242 ..     194     289 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0009
     DUF4337 120 asalLqiaIvlaaialltkkklllylslvlglvGlvlf 157
                 + ++L i  +la+i llt + ++l++s v+g++Gl+ f
  EHU01229.1  20 SGIVLAIVTLLASIGLLTLSGWFLAASSVAGVAGLYSF 57 
                 568999999*************************9976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
     DUF4337  75 vdkkiakykkkiarykkekkeikkkAkeleaerde 109
                  d++ ++++                  +++++ ++
  EHU01229.1 226 LDEDEQQWQ------------------DAQRQQER 242
                 222222222..................22222222 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.9       1.6   1.2e+03     390     430 ..      21      57 ..      13      83 .. 0.47
   2 ?   -2.5   4.6       2.1   1.6e+03     389     441 ..     141     189 ..     129     208 .. 0.57
   3 ?    8.3   0.0    0.0012      0.88     352     429 ..     214     291 ..     193     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
     DUF2207 390 liilglilillallllvlllvfllilllillliaiivlllf 430
                 +i+l+++ +l++++l    l++ +++l +  +++++ l+ f
  EHU01229.1  21 GIVLAIVTLLASIGL----LTLSGWFLAASSVAGVAGLYSF 57 
                 333333333333333....3333333333333333333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
     DUF2207 389 gliilglilillallllvlllvfllilllillliaiivlllfsrllgrr.teeG 441
                 +l+ +++i+++    +++l + + l l+l+l+ i++ +l+lf  l++r+  + G
  EHU01229.1 141 LLGAFIVIVVV----TAGL-SLIDLHLALVLGGILLTLLCLFPPLFYRLgAPTG 189
                 22222222222....2222.6666677777777777777776666666544444 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0012
     DUF2207 352 kfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlll 429
                 +++ + ++w+  ++++e+++ d++ ++++    a +l+l++ gl ++ l+ l+++++    l   li l+++++++++
  EHU01229.1 214 TLYGNAARWRARLDEDEQQWQDAQRQQERLQALAQSLLLLCSGLTVTALLWLSATSIAQQQLPGPLIALVVFCALAAF 291
                 57788899****************999998888888888888888888777777775555555555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 3940.82
//
Query:       EHU01230.1  [L=588]
Description: cysteine transporter subunit of ABC superfamily [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-37  127.7   3.3    8.8e-37  127.2   3.3    1.1  1  ABC_membrane  ABC transporter transmembrane region
    9.9e-27   94.1   0.0    1.6e-26   93.5   0.0    1.3  1  ABC_tran      ABC transporter
    4.2e-06   26.3   0.1     0.0014   18.1   0.0    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
    1.6e-05   24.9   5.9     0.0084   15.9   0.2    2.5  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.001   19.3   0.7     0.0049   17.2   0.1    2.4  1  AAA_22        AAA domain
      0.002   18.1   0.0     0.0041   17.0   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0058   16.7   0.2      0.015   15.4   0.1    1.7  2  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   15.4   1.0          2    8.1   0.1    2.3  2  IstB_IS21     IstB-like ATP binding protein
      0.021   14.5   0.0      0.052   13.3   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.035   14.5   0.5      0.035   14.5   0.5    2.3  2  AAA_16        AAA ATPase domain
      0.072   13.0   0.0       0.15   11.9   0.0    1.5  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
      0.081   12.2   0.0       0.13   11.5   0.0    1.3  1  AIG1          AIG1 family
      0.087   12.3   0.1       0.14   11.5   0.1    1.2  1  Pox_A32       Poxvirus A32 protein
       0.11   12.6   0.1        0.2   11.7   0.1    1.4  1  Dynamin_N     Dynamin family
       0.12   11.9   0.0       0.23   11.0   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.18   12.0   0.0        1.2    9.4   0.0    2.2  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.27   11.7   0.0       0.46   11.0   0.0    1.3  1  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   3.3   8.4e-40   8.8e-37      11     270 ..      34     291 ..      26     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 8.4e-40
                   HHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHH CS
  ABC_membrane  11 agvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltnd 107
                   + +l ++++++l+++l+ l+ +  +    l   + ll+l+++++++l+++++     +g+ ++ +lr+++++++  +  ++++ +++G++ ++l ++
    EHU01230.1  34 GALLIIMQAWLLASLLQALIIDRHSPA-SLLSSFSLLILCFVLRAALNYAREQAGFRAGQAIRQALRKQVLDRLAALGPAWIQGKPAGSWATLLLEQ 129
                   566778999**********99744444.6999999************************************************************** PP

                   HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHH CS
  ABC_membrane 108 vsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyfle 204
                   +++++  +++ l +++ + ++ +++l+ +f l+w   l+l+a++pli l++a++++   ++++++  a+a++s  + + l+g +t+++f r +++ +
    EHU01230.1 130 TEDMQAYYARYLPQMTLAAVIPCCILLTLFPLNWAAGLILFATAPLIPLFMALVGMGAAEANRRNFVALARLSGNFLDRLRGRETLRLFHRADAEKQ 226
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane 205 kfekaleeakkagikkaianglligitqllgllsyalal.wfGttlvisgelsvgdlvvflslfail 270
                    + +a+++++++++ +++++ l++++++++++ls+a+++ +fG+++   gel +gd+   ++lfa +
    EHU01230.1 227 AIADATTDFRQRTMEVLRLAFLSSSVLEFFASLSIAVVAvYFGFSYL--GELHFGDYGRGVTLFAGF 291
                   ************************************9999*******..9******99888888854 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   1.5e-29   1.6e-26       4     136 ..     370     513 ..     367     514 .. 0.89

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.5e-29
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdeeiek 87 
                 ++++l++g++va+vG++GaGK+ Ll++l+g l p +G+++++g +l+++ ++ ++++++++ q+pql    t+r+n               +++  i++
  EHU01230.1 370 LTFTLRAGTRVALVGKSGAGKTALLNALLGFL-PYQGSLKVNGIELHRIARHDWHRHLAWVGQNPQLPAV-TLRDNiimdaphdparlsalTASCGIDE 466
                 79*****************************8.79*****************************988655.5*******99966666665555555888 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +ls+l      dt  ++  ++LS Gq qr+a+aral k ++llllDEp 
  EHU01230.1 467 FLSRLPAGL--DTEPGDASHHLSVGQAQRIAVARALYKPAQLLLLDEPA 513
                 888777655..77778888*****************************7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0064       6.7      27      50 ..     380     403 ..     371     426 .. 0.80
   2 !   18.1   0.0   1.4e-06    0.0014     149     209 ..     494     554 ..     457     563 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0064
                 EEEEESTTSSHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGe 50 
                  a+vG+ G+GK+ ll+A+l  L  
  EHU01230.1 380 VALVGKSGAGKTALLNALLGFLPY 403
                 589**************9765554 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.4e-06
                 HHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 149 LlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                 + +A   +kpa l llDe +a LD +  + v + l+++ ++   ++i+++ ++l+  d++ 
  EHU01230.1 494 IAVARALYKPAQLLLLDEPAASLDSQSEHHVMQALNQAATRQTTLMITHQIDLLQTWDAIW 554
                 44566789*******************************9999*******99999888765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.5   4.7e+03     219     252 ..     240     296 ..     192     298 .. 0.57
   2 !   11.6   0.2   0.00017      0.18       3      27 ..     381     402 ..     380     419 .. 0.81
   3 !   15.9   0.2     8e-06    0.0084     236     302 ..     485     547 ..     480     548 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.5
      AAA_21 219 r.......................gvvflengdgqelparelSdGtkrllalltall 252
                                           v++  ++ +el + + + G+  ++++l+++l
  EHU01230.1 240 MevlrlaflsssvleffaslsiavVAVYFGFSYLGELHFGDYGRGVTLFAGFLVLIL 296
                 233333333333355555555555666777777777777777777777777777766 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00017
      AAA_21   3 vliGpNgsGKSnLLdaldllarldr 27 
                 +l+G+ g+GK+ LL al ++   ++
  EHU01230.1 381 ALVGKSGAGKTALLNALLGF---LP 402
                 79***************887...44 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 8e-06
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHSplll 302
                 +lS G+ + +a++ al+  +    lll+DEp ++L+ +  +++++ l+++++   Q  ++ TH+  ll
  EHU01230.1 485 HLSVGQAQRIAVARALYKPA---QLLLLDEPAASLDSQSEHHVMQALNQAAT--RQTtLMITHQIDLL 547
                 55555555555555666555...9***********************99999..8888*****97776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.6e-06    0.0049       8     112 ..     380     531 ..     375     548 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.......................................erpevvfvtlpsstsskdllrellralgle 67 
                 ++++G sG+GKT ll+ ll  l+ + + +                                        ++++  +  l++s++ +++l++l   l+ e
  EHU01230.1 380 VALVGKSGAGKTALLNALLGFLPYQGSLKVngielhriarhdwhrhlawvgqnpqlpavtlrdniimdaPHDPARLSALTASCGIDEFLSRLPAGLDTE 478
                 589*******************8666665599***************************9988888887777777899999999*************98 PP

      AAA_22  68 lkaerlsseell.ealeqalrarav...ielliiDEaqh.lr..s....eealeeL 112
                   +    s++l   + ++ + ara     +ll++DE    l+  s    ++al++ 
  EHU01230.1 479 PGD---ASHHLSvGQAQRIAVARALykpAQLLLLDEPAAsLDsqSehhvMQALNQA 531
                 888...888888899999999999999*********77779865355566666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.9e-06    0.0041      92     121 ..     369     399 ..     344     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.9e-06
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallp 121
                   l+  l+    ++lvG+SG+GK++L+nall+
   EHU01230.1 369 PLTFTLRAgTRVALVGKSGAGKTALLNALLG 399
                  5677777757789***************987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.4e-05     0.015       1      21 [.     379     399 ..     379     417 .. 0.88
   2 ?   -3.4   0.0       9.9     1e+04      47      72 ..     505     530 ..     490     553 .. 0.46

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +va+vG++ +GK+ L+nal+g
  EHU01230.1 379 RVALVGKSGAGKTALLNALLG 399
                 69*****************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.9
                 EEEEEECGGCSS.HHHHHHHHHHHHHH CS
    MMR_HSR1  47 eielvDtpGlie.gaseekglgkafla 72 
                 ++ l+D p   + ++++e+ + +a+ +
  EHU01230.1 505 QLLLLDEPA-ASlDSQSEHHVMQALNQ 530
                 555555555.22222222222222222 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.011        12      46      67 ..     376     397 ..     368     418 .. 0.86
   2 ?    8.1   0.1    0.0019         2     102     157 ..     497     553 ..     483     558 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
   IstB_IS21  46 kkenivllGpsGvGKshlaial 67 
                 +   ++l+G sG+GK+ l  al
  EHU01230.1 376 AGTRVALVGKSGAGKTALLNAL 397
                 556799**********998886 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
   IstB_IS21 102 alkrllkvdllilDdlgllpldqaeaellfeviekryerr.siiitsnlpf.aewdev 157
                 a + +  ++ll+lD+ +   ld+++++++++ ++++  r+ +++it ++ + ++wd++
  EHU01230.1 497 ARALYKPAQLLLLDEPAA-SLDSQSEHHVMQALNQAATRQtTLMITHQIDLlQTWDAI 553
                 333344559******886.677777888888887777665156899998752667765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.9e-05     0.052      17      44 ..     372     399 ..     359     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-05
      AAA_29  17 ieidlkg.atlltGpsGsGKSTllDAiqa 44 
                 ++++ +g  + l+G+sG+GK++ll A+  
  EHU01230.1 372 FTLR-AGtRVALVGKSGAGKTALLNALLG 399
                 5555.445899*************99865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         2   2.1e+03      73     106 ..      95     131 ..      72     243 .. 0.55
   2 ?   14.5   0.5   3.4e-05     0.035      25      88 ..     378     438 ..     365     541 .. 0.46

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2
      AAA_16  73 aqalareellrqllde....aesaeleawrekleeala 106
                  qal r+++l  l++      + + ++ w++ l+e+++
  EHU01230.1  95 RQAL-RKQVLDRLAALgpawIQGKPAGSWATLLLEQTE 131
                 3333.334444443334444344444444444444444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.4e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                   v l+G sG GK++l+++ll  l  +g + ++g   +    i++  + + la+ +   ql + 
  EHU01230.1 378 TRVALVGKSGAGKTALLNALLGFLPYQGSLKVNGIELHR---IARHDWHRHLAWVGQNPQLPAV 438
                 5689*****************988888422222222222...3333444444444444444444 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.15       2      27 ..     380     405 ..     379     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
        MobB   2 lgivgksgsGKTtLleklipelkarg 27 
                 +++vgksg+GKT+Ll+ l+  l  +g
  EHU01230.1 380 VALVGKSGAGKTALLNALLGFLPYQG 405
                 689****************9997776 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.13       2      34 ..     379     411 ..     378     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS- CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqs 34 
                 ++ lvGk+g+Gk a  N++lg   ++ +l+ ++
  EHU01230.1 379 RVALVGKSGAGKTALLNALLGFLPYQGSLKVNG 411
                 789*****************9877777766655 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00014      0.14      14      35 ..     378     399 ..     373     404 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
     Pox_A32  14 FrlalvGgsGsGktvyLlsLlr 35 
                  r+alvG+sG+Gkt+ L +Ll 
  EHU01230.1 378 TRVALVGKSGAGKTALLNALLG 399
                 699**************99985 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00019       0.2       1      21 [.     380     400 ..     380     406 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 +a+vG+  +GK+++lnaLlg 
  EHU01230.1 380 VALVGKSGAGKTALLNALLGF 400
                 799****************95 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.23      27      58 ..     371     402 ..     346     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkld 58 
                 +  l+++  v lvG++G GKt++++ ll  l+
  EHU01230.1 371 TFTLRAGTRVALVGKSGAGKTALLNALLGFLP 402
                 567889999****************9998877 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0011       1.2       1      20 [.     379     398 ..     379     420 .. 0.87
   2 ?   -0.9   0.0       1.7   1.8e+03      66     119 ..     490     545 ..     488     546 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
                 EEEEESSTTSSHHHHHHCHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfv 20 
                 +v lvG+sg+GKt ll+ ++
  EHU01230.1 379 RVALVGKSGAGKTALLNALL 398
                 589*************9886 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
                 GGCTTTT-HHHHCTSCEEEEEEE..GHHHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  66 qerfrslhplylreaalailvyd..srssenlkeWlkelkkvagkspvilvgnkiD 119
                 q +  ++++  ++ a+l++l     s +s++ ++ ++ l++ a+++  +++  +iD
  EHU01230.1 490 QAQRIAVARALYKPAQLLLLDEPaaSLDSQSEHHVMQALNQAATRQTTLMITHQID 545
                 55555566666667776666543223355677889999999999999999999988 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00043      0.46      23      43 ..     381     401 ..     368     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00043
      AAA_23  23 lItGpNGaGKTTildAiklaL 43 
                 +++G+ GaGKT++l+A+   L
  EHU01230.1 381 ALVGKSGAGKTALLNALLGFL 401
                 689*************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4058.20
//
Query:       EHU01231.1  [L=322]
Description: FAD/NAD(P)-binding thioredoxin reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-52  176.9   0.3    5.9e-52  176.7   0.3    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    3.6e-22   79.0   0.1    7.5e-18   64.8   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.1e-18   66.1   2.4    1.9e-17   63.6   1.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      4e-07   29.4   2.8      0.062   12.4   0.1    3.9  4  GIDA            Glucose inhibited division protein A
    5.8e-05   22.4   6.6       0.01   15.0   0.2    3.7  4  FAD_binding_2   FAD binding domain
    6.9e-05   21.7   0.3        1.1    7.9   0.1    4.3  5  HI0933_like     HI0933-like protein
    0.00018   21.2   0.7          1    8.9   0.0    3.5  3  DAO             FAD dependent oxidoreductase
    0.00078   18.9   0.2     0.0022   17.4   0.0    1.9  3  FAD_oxidored    FAD dependent oxidoreductase
     0.0012   19.0   0.0     0.0057   16.8   0.0    2.2  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0015   17.8   0.1       0.02   14.1   0.0    2.2  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.029   14.4   0.2        1.8    8.6   0.0    3.1  3  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.03   14.8   0.0       0.27   11.7   0.0    2.1  2  NAD_binding_7   Putative NAD(P)-binding
      0.034   13.4   0.9        0.6    9.3   0.0    2.7  3  Thi4            Thi4 family
      0.051   12.9   0.1        3.9    6.7   0.0    2.2  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.081   11.8   0.6       0.67    8.7   0.1    2.3  3  Trp_halogenase  Tryptophan halogenase
       0.11   10.9   0.0       0.15   10.4   0.0    1.2  1  FMO-like        Flavin-binding monooxygenase-like


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7   0.3   5.2e-55   5.9e-52       2     292 ..       8     301 ..       7     303 .. 0.92

  Alignments for each domain:
  == domain 1  score: 176.7 bits;  conditional E-value: 5.2e-55
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +++++G+GpAG++aa ++a+a+++ +l+  +g   +g+   +++++++++d++ ++         e+ +k+n++i+   + ++ ++d +++ + l+  
   EHU01231.1   8 KLLILGSGPAGYTAAVYAARANLNPVLI--TGLEKGGQLTTTTEVENWPGDPHDLTgpslmermhEHAEKFNTEII--SD-HIHTVDLQNRPFRLTG- 99 
                  689*************************..6666699999*************999******99999999999965..33.68899999*9****64. PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                     d  ++++d+l++AtG+s+r lg+p +    gk+v+++++++++ + +++  ++v+GgG+++vE A +la++++ev+l+++rd +    +k l ++
   EHU01231.1 100 ---DSGEYTADALIIATGASARYLGLPSEDAFKGKGVSACATCDGFFYRNQK--VAVIGGGNTAVEEALYLANIASEVHLIHRRDSFR--AEKILIDR 190
                  ...5558*****************************************9998..*********************************8..99****** PP

                  HHHHHHHTTEEEEESCEEEEEEETTE.....EEE..EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.....BESSTTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgnge.....kle..vvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl.....rtnvpgiyai 274
                  l+e++ + ++ ++++ + +e+ g++       l+  + +e+ e++d+  ++va+G +p+t+++  + +l+l e+g+i+v + l     +t++pg++a+
   EHU01231.1 191 LMEKVSNGNIVLHTHRTLEEVVGDQMgvtglTLRstLNTEETETLDVAGLFVAIGHSPNTAIF--DGQLAL-ENGYIKVQSGLhgnatQTSIPGVFAA 285
                  *************************9999774446588888888****************996..889999.9**********999999********* PP

                  GGGCTECCSS--HHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 275 GDvaggkggpelaqaAvq 292
                  GDv   ++++++a ++  
   EHU01231.1 286 GDVM--DHIYRQAITSAG 301
                  ****..899999887765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.9e-05     0.066       1      40 [.      10      54 ..      10      61 .. 0.81
   2 !   64.8   0.0   6.7e-21   7.5e-18      80     305 .]      62     286 ..      55     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledyli..lEkg.nigns..iyryp 40
                 +I G GPaG +aa+ + +a+l+ +li  lEkg +++++  + ++p
   EHU01231.1 10 LILGSGPAGYTAAVYAARANLNPVLItgLEKGgQLTTTteVENWP 54
                 699**********************98889997554431156666 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 6.7e-21
  Pyr_redox_3  80 rkealeYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefh..kyagqkvvViGgkn 174
                  +  ++e + e a++f+ +i    ++ +v+ +++ f+++ ++++y+A+ +iiAtG     ++l+ p e+  + k  s    ++   y++qkv+ViGg+n
   EHU01231.1  62 GPSLMERMHEHAEKFNTEIIS-DHIHTVDLQNRPFRLTGDSGEYTADALIIATGA--SARYLGLPSEDAfKGKGVSACATCDgfFYRNQKVAVIGGGN 156
                  556666777888888888876.579*****************************8..778888888875444444444443300578*********** PP

  Pyr_redox_3 175 SavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey.......kvktedgkkvevkddvvlat 265
                  +av+ Al l++  +eV++++r+++ ++e          +  +rl e v++++i ++++ +++e+  ++  +       +++te++++++v    ++a+
   EHU01231.1 157 TAVEEALYLANIASEVHLIHRRDSFRAE---------KILIDRLMEKVSNGNIVLHTHRTLEEVVGDQMGVtgltlrsTLNTEETETLDV-AGLFVAI 244
                  **********************976665.........46778899989999999999999999987766552221111344555444444.667889* PP

  Pyr_redox_3 266 Gykpdlsflkkslfeldedgrpvlte....eteetnvpglflaG 305
                  G +p++ +++  +++l e+g++++++    +  +t +pg+f aG
   EHU01231.1 245 GHSPNTAIFD-GQLAL-ENGYIKVQSglhgNATQTSIPGVFAAG 286
                  *********9.66666.67776665544448999*******999 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.57   6.4e+02       1      27 [.       8      34 ..       8      53 .. 0.81
   2 !   63.6   1.0   1.7e-20   1.9e-17       1      79 [.     148     224 ..     148     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.57
                EEEEECSSHHHHHHHHHHHHTTSEEEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtv 27
                k++++G+G  g  +A ++a+ + +  +
  EHU01231.1  8 KLLILGSGPAGYTAAVYAARANLNPVL 34
                689********9999999887765555 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 1.7e-20
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT....TEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn....gievllntkveeiegsedgvesvklk 79 
                 kv+v+GgG++++E+A +la+++++V++++r+d ++      a+kil ++l ++    +i +++++++ee++g++ gv++++l+
  EHU01231.1 148 KVAVIGGGNTAVEEALYLANIASEVHLIHRRDSFR------AEKILIDRLMEKvsngNIVLHTHRTLEEVVGDQMGVTGLTLR 224
                 79*********************************......8888888888877888***********************998 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.5e-05     0.062       2      29 ..       9      36 ..       8      52 .. 0.83
   2 ?    1.2   0.0      0.14   1.6e+02     110     150 ..      77     115 ..      65     135 .. 0.71
   3 !    9.1   0.0   0.00054      0.61       1      44 [.     148     200 ..     148     227 .. 0.80
   4 ?    4.1   0.1     0.017        20     335     390 ..     258     316 ..     248     317 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLit 29
                + ++G G AG+ AA+ aar++++ +Lit
  EHU01231.1  9 LLILGSGPAGYTAAVYAARANLNPVLIT 36
                5799*******************99994 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
                 TEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 110 nleiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 n eii++ ++ ++++++     +t d  +++a+a +iatG+
  EHU01231.1  77 NTEIISDHIHTVDLQNRPF--RLTGDSGEYTADALIIATGA 115
                 5566666777776633333..2566777899*********9 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00054
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE.........ES-GGGTT--SSSSEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi.........thkldtiaelsCnpsi 44 
                 +v ViGgG   +e Al +a+   +v Li            +d+++e + n +i
  EHU01231.1 148 KVAVIGGGNTAVEEALYLANIASEVHLIhrrdsfraeKILIDRLMEKVSNGNI 200
                 699*************************7777777665566666666666666 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.017
                 EEEEEEE-GGGB-T.TSBBSSSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHHCT CS
        GIDA 335 aieydyvdprqlln.tLetkkvkgLflAGqinGteGYeEa...aaqGllAGinaarkakg 390
                 a e+ y++ +  l+ +    +++g+f+AG++     Y  a   a++G++A++ a r+++g
  EHU01231.1 258 ALENGYIKVQSGLHgNATQTSIPGVFAAGDVMDHI-YRQAitsAGTGCMAALDAERYLDG 316
                 667778877776666666777**********9986.655411177*********999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   9.1e-06      0.01       2      37 ..       9      43 ..       8      50 .. 0.85
   2 ?    1.5   0.0      0.11   1.3e+02     139     204 ..      61     118 ..      51     152 .. 0.62
   3 ?   -1.4   0.0      0.82   9.2e+02     142     187 ..     186     231 ..     169     246 .. 0.73
   4 !    7.0   0.1    0.0024       2.7     386     415 ..     273     302 ..     261     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.1e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   +++ GsG AG++AA+ aa+a+l+ ++++  ++ gg+
     EHU01231.1  9 LLILGSGPAGYTAAVYAARANLNPVLITGLEK-GGQ 43
                   589*******************9999888776.554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                    HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET...TTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 139 tghallarlvesarkagvdfqerteadeLivedgrvtGavvenp...esgrevrirakavvlatgGfgr 204
                    tg+ l++r++e+a+k ++++              +++++ ++n+    +g   +++a+a+++atg+  r
     EHU01231.1  61 TGPSLMERMHEHAEKFNTEIISD-----------HIHTVDLQNRpfrLTGDSGEYTADALIIATGASAR 118
                    77777777777775544333332...........33344444333433333345778888888887666 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.82
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCE CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavvenpesgre 187
                     l+ rl+e++ + ++ ++++  ++e++ ++ +vtG +++   + +e
     EHU01231.1 186 ILIDRLMEKVSNGNIVLHTHRTLEEVVGDQMGVTGLTLRSTLNTEE 231
                    5778899999777788888888888888777999999996633333 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0024
                    TTEEESSBTEEE-STCEESSSSTTS--TTH CS
  FAD_binding_2 386 dadgqpipGLYAaGevaaggvhganrlgGn 415
                    +a+++ ipG +AaG v+  ++  a   +G+
     EHU01231.1 273 NATQTSIPGVFAAGDVMDHIYRQAITSAGT 302
                    468899***********9988887777776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00097       1.1       2      31 ..       8      37 ..       7      46 .. 0.83
   2 ?    4.5   0.0      0.01        12     129     165 ..      82     116 ..      57     123 .. 0.70
   3 ?    2.5   0.1     0.042        47       2      41 ..     148     188 ..     147     189 .. 0.88
   4 ?    0.7   0.0      0.15   1.7e+02     109     150 ..     184     226 ..     179     247 .. 0.70
   5 ?   -0.0   0.0      0.25   2.8e+02     374     386 ..     278     290 ..     273     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00097
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 +++++G G+AG  aA+ aa+++ + +l+  
   EHU01231.1  8 KLLILGSGPAGYTAAVYAARANLNPVLITG 37
                 678****************99998777755 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.01
                  S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 129 etevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  + ++++v+ ++   fr++  +++e++ad+l++AtG  
   EHU01231.1  82 SDHIHTVDLQNRP-FRLTG-DSGEYTADALIIATGAS 116
                  3456777554444.99998.99***********9965 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.042
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS.-HHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl.grKili 41 
                  +v+viGgG   +  A+ +a+  ++V l+ + +++ ++Kili
   EHU01231.1 148 KVAVIGGGNTAVEEALYLANIASEVHLIHRRDSFrAEKILI 188
                  79**************************9998874577775 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.15
                  HHH.HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TT CS
  HI0933_like 109 edi.vdallkelkeagvklrletevksvekeedgkfrvktkse 150
                  e+i +d l++++++ ++ l++++++++v  ++ g+  ++++s+
   EHU01231.1 184 EKIlIDRLMEKVSNGNIVLHTHRTLEEVVGDQMGVTGLTLRST 226
                  5542799*********************999888877777322 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.25
                  TSTTEEE-GGGBS CS
  HI0933_like 374 kvpgLffaGEvlD 386
                  ++pg+f aG v+D
   EHU01231.1 278 SIPGVFAAGDVMD 290
                  79**********9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00089         1       2      33 ..       9      45 ..       8      53 .. 0.84
   2 ?    4.8   0.0     0.015        17     149     207 ..      66     121 ..      56     137 .. 0.64
   3 ?    3.5   0.1      0.04        45       1      32 [.     148     181 ..     148     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00089
                EEEECTSHHHHHHHHHHHHTT.....EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg.....Vtllekgdiag 33
                ++i G+G +G ++A ++ar++     +t lekg ++ 
  EHU01231.1  9 LLILGSGPAGYTAAVYAARANlnpvlITGLEKGGQLT 45
                68****************9966689999999996655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.015
                 HHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 149 taalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.ll 207
                 +  + + ae+   ei+    +  ++ + ++  ++  t + ge  +ada+++a+Ga ++ l 
  EHU01231.1  66 MERMHEHAEKFNTEIISD-HIHTVDLQ-NRPFRL--TGDsGEY-TADALIIATGASARyLG 121
                 555566666666666666.55555332.345555..4454765.56**********98543 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.04
                 EEEEECTSHHHHHHHHHHHHT.T.EEEEESSSST CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g.Vtllekgdia 32 
                 +v++iGGG + +  A++La     V l+ ++d +
  EHU01231.1 148 KVAVIGGGNTAVEEALYLANIaSeVHLIHRRDSF 181
                 59****************753258***9999765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     2e-06    0.0022       2      40 ..       9      46 ..       8      91 .. 0.84
   2 ?   -2.7   0.1       2.5   2.8e+03       2      32 ..     149     179 ..     148     181 .. 0.86
   3 ?   -2.6   0.0       2.4   2.7e+03      97     127 ..     192     225 ..     179     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40
                  +++ G+gpaG++AA+ Aara  + +L+      GG+lt 
    EHU01231.1  9 LLILGSGPAGYTAAVYAARANLNPVLITG-LEKGGQLTT 46
                  689***********************975.455787775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32 
                   v V+GGg   v  A+  a+   +v L+++r+
    EHU01231.1 149 VAVIGGGNTAVEEALYLANIASEVHLIHRRD 179
                   89*****999999999999999999998876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.4
  FAD_oxidored  97 l...aeagvtvllntrlvevekegkriesvtves 127
                   +   ++ ++ + ++++l+ev+ ++  ++++t++s
    EHU01231.1 192 MekvSNGNIVLHTHRTLEEVVGDQMGVTGLTLRS 225
                   3433555899999999999999877799999864 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.1e-06    0.0057       1      62 [.      11      74 ..      11      80 .. 0.77
   2 ?   -1.9   0.0       3.6     4e+03       1      29 [.     151     179 ..     151     181 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE....TTCEEC.TS---EEETTHHHHCH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev....pgvrvd.ygahifhgsgyypnvr 62
                   I+G+G +G +aA ++a+a+++ +l+ ++   GG++++ +     pg ++d +g++ +  ++  +++ 
     EHU01231.1 11 ILGSGPAGYTAAVYAARANLNPVLI-TGLEKGGQLTTTTEvenwPGDPHDlTGPSLMERMH--EHAE 74
                   89***************98886666.55556777777755567899****88888888775..5555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.6
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    ++G+G ++   A +La+   +v+l+ +rd
     EHU01231.1 151 VIGGGNTAVEEALYLANIASEVHLIHRRD 179
                    79999888877878877667777776665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-05      0.02     140     229 ..      97     182 ..      67     187 .. 0.65
   2 ?    1.4   0.0      0.13   1.4e+02     293     340 ..     198     246 ..     185     248 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
  K_oxygenase 140 aegeeeelearnlvlgvGtep.kiPevlekle...gkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseale 229
                   +g++ e++a +l++++G ++ ++    e+     g + +   + +        +++++aV+G+G +a e +  l++ ++  e++l+ r+++++
   EHU01231.1  97 LTGDSGEYTADALIIATGASArYLGLPSEDAFkgkGVSACATCDGF------FYRNQKVAVIGGGNTAVEEALYLANIAS--EVHLIHRRDSFR 182
                  4578899999999999996551443333322200022233333333......456799************8888887766..999****99987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
  K_oxygenase 293 erlrllpnrevesaeaegkgeveltlrnee.sgeeetlevdavvlATGY 340
                   ++ l ++r++e++  ++ g + ltlr +  ++e+etl+v  +++A G 
   EHU01231.1 198 GNIVLHTHRTLEEVVGDQMGVTGLTLRSTLnTEETETLDVAGLFVAIGH 246
                  46889999******99999899999998751556799999999999886 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.3   3.3e+02      10      43 ..       4      37 ..       1      52 [. 0.84
   2 ?    0.1   0.0      0.69   7.7e+02      42      86 ..      66     116 ..      63     121 .. 0.67
   3 ?    8.6   0.0    0.0016       1.8      11      52 ..     145     186 ..     139     215 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.3
                  .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEE CS
  Shikimate_DH 10 lkekkvlliGaGemaelvakhLlakgvkkvvvaN 43
                   k++k l++G G  +  +a + ++++++ v++++
    EHU01231.1  4 AKHSKLLILGSGPAGYTAAVYAARANLNPVLITG 37
                  67899***********999999999999888875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.69
                   EESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHH......T-SEEEE-SSSS CS
  Shikimate_DH  42 aNRtlerakelaeelkgeeiealkleelkella......eadvvisatase 86 
                   + R +e+a+++ +e+ +++i++++l++   +l        ad +i+at+++
    EHU01231.1  66 MERMHEHAEKFNTEIISDHIHTVDLQNRPFRLTgdsgeyTADALIIATGAS 116
                   678888888888888777788888877666654222222567777777765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0016
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHH CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakel 52 
                   +++kv +iG G++a + a +L++   +  ++  R+  ra+++
    EHU01231.1 145 RNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDSFRAEKI 186
                   689*******************99999889999999999875 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.61   6.8e+02       6      36 ..       5      35 ..       1     115 [. 0.77
   2 ?   11.7   0.0   0.00024      0.27       6      46 ..     145     193 ..     143     252 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.61
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvv 36
                   k  k l+ G G+ +++ +   ++a+ + +++
     EHU01231.1  5 KHSKLLILGSGPAGYTAAVYAARANLNPVLI 35
                   5678999999999998887777777666655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00024
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeele........e 46 
                    +++kv v+GgG+ A + +  l++   +v+++  + +  +e        e
     EHU01231.1 145 RNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDSFRAEkilidrlmE 193
                    689***************************9988522222344444441 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00053       0.6      17      47 ..       6      35 ..       1      46 [. 0.82
   2 ?    0.8   0.0      0.21   2.3e+02      15      49 ..     144     177 ..     136     184 .. 0.81
   3 ?   -0.8   0.0      0.66   7.4e+02     101     142 ..     189     228 ..     181     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00053
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEE CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvail 47
                 s ++i G+G++G taa y a++ +l+ +++
  EHU01231.1  6 HSKLLILGSGPAGYTAAVYAARA-NLNPVLI 35
                57789****************99.8876655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
                 HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  15 yaesDvvivGaGssGLtaayylakkpdlkvailer 49 
                 y ++ v+++G+G + +  a yla+    +v ++ r
  EHU01231.1 144 YRNQKVAVIGGGNTAVEEALYLANI-ASEVHLIHR 177
                 667889****************987.556666655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.66
                 HHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHH CS
        Thi4 101 stllskvlqlanvkllnavaveDlivregegvaGvvinwtlv 142
                  +l+ kv +  n+ l +  ++e+++  +  gv+G+ + +tl 
  EHU01231.1 189 DRLMEKVSN-GNIVLHTHRTLEEVVGDQ-MGVTGLTLRSTLN 228
                 567788877.899999999999988777.9999999988875 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0034       3.9      26      50 ..       4      28 ..       1      56 [. 0.88
   2 ?    4.1   0.0     0.022        25      13      61 ..     128     179 ..     121     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0034
                 B---EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C 26 vepakvlviGgGvaGlqAiatakgl 50
                 ++++k l++G G aG  A+  a++ 
   EHU01231.1  4 AKHSKLLILGSGPAGYTAAVYAARA 28
                 4689***************999875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.022
                  CTSEEE.TTCEETC..B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  13 fggkgt.laGgvpg..vepakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  f+gkg+ + +++ g   ++ kv viGgG   ++ +   +++  +V ++  r 
   EHU01231.1 128 FKGKGVsACATCDGffYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRD 179
                  55555513455666545789********999888888888888888777665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00059      0.67       1      32 [.       8      39 ..       8      46 .. 0.85
   2 ?   -3.5   0.0       3.1   3.4e+03     160     192 ..      69      99 ..      66     119 .. 0.66
   3 ?    0.9   0.0      0.15   1.6e+02       1      32 [.     148     176 ..     148     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00059
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlve 32
                    k++i+G G+aG++aA + a+a  + + +t +e
      EHU01231.1  8 KLLILGSGPAGYTAAVYAARANLNPVLITGLE 39
                    579****************9986667777666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
                     HHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEE CS
  Trp_halogenase 160 LrrvaearGvtrvegkvvevqldedgrveslrl 192
                     ++++ae+ + +++++++++v+l+++ +  +l+ 
      EHU01231.1  69 MHEHAEKFNTEIISDHIHTVDLQNRPF--RLTG 99 
                     566788888889999999998887654..4444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.15
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlve 32 
                     k+ ++GGG  +   A +la+      ev l+ 
      EHU01231.1 148 KVAVIGGGNTAVEEALYLANIA---SEVHLIH 176
                     699**************99998...5577765 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014      0.15     159     236 ..     122     204 ..     100     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
    FMO-like 159 fpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGsw.....vlsrvsdsGypwdmllvt 236
                 +p  ++fkG+ + +    +   +++++v viG Gn++ + a  l++ a +v l  r+ s+     +++r++++    +++l+t
  EHU01231.1 122 LPSEDAFKGKGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDSFraekiLIDRLMEKVSNGNIVLHT 204
                 57778999999999999999999****************************99888877633332566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2218.70
//
Query:       EHU01232.1  [L=164]
Description: leucine-binding DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-24   83.7   0.1    1.8e-23   82.3   0.0    1.7  2  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    2.2e-21   75.1   0.3    6.5e-21   73.6   0.3    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding
    5.4e-20   71.0   0.4    8.4e-20   70.3   0.4    1.3  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0068   16.3   0.0      0.014   15.4   0.0    1.4  1  MarR            MarR family
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.046   13.6   0.0    1.4  1  MarR_2          MarR family
       0.14   11.9   0.0       0.25   11.1   0.0    1.4  1  LexA_DNA_bind   LexA DNA binding domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.72   2.1e+03      45      68 ..      10      33 ..       9      35 .. 0.79
   2 !   82.3   0.0   6.1e-27   1.8e-23       1      75 []      78     152 ..      78     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.72
                    SSHHHHHHHHHHTTTTSTTEEEEE CS
  AsnC_trans_reg 45 rdlealerflreklaslpgvarte 68
                    +dl+ ++r + ++l++   + ++e
      EHU01232.1 10 KDLDRIDRNILNELQKDGRISNVE 33
                    688889999998899888888877 PP

  == domain 2  score: 82.3 bits;  conditional E-value: 6.1e-27
                     EEEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v+++l++g+p+ +e+f +a+++l+e +ec+ v+Gd+dyllk +v+d+ a++++l e+l +lpgv +t+t++v+e+
      EHU01232.1  78 VEITLNRGAPDVFEQFNAAVQKLEETQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEE 152
                     89****999****************************************************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.3   2.2e-24   6.5e-21       1      47 [.      12      58 ..      12      58 .. 0.99
   2 ?   -2.0   0.0      0.91   2.7e+03      35      43 ..      94     102 ..      93     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 2.2e-24
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                ld++dr+IL++Lqk++ris+ eL++r+glSp+++++r++rLe++G+I
  EHU01232.1 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFI 58
                79*******************************************99 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.91
      HTH_24  35 nrrlkrLee 43 
                 n+ +++Lee
  EHU01232.1  94 NAAVQKLEE 102
                 7899***98 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.4   2.8e-23   8.4e-20       1      42 []      12      53 ..      12      53 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.8e-23
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+iDr IL++Lq+d+Ris+ eL++rvGlS++++l+RvrrLe
     EHU01232.1 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLE 53
                   8****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.5e-06     0.014       8      47 ..      19      58 ..      18      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.5e-06
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                iL  l   g +s+ eL k++g+s++   + ++rLe++G+i
  EHU01232.1 19 ILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFI 58
                78889999*******************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.046       2      51 ..      11      58 ..      10      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLv 51
                +l++ ++ +L++L   ++  ++  el +r gls+     +++rL+++G++
  EHU01232.1 11 DLDRIDRNILNELQKDGR--ISNVELSKRVGLSPTPCLERVRRLERQGFI 58
                57788899*****99998..****************************99 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.5e-05      0.25      29      56 ..      32      58 ..      17      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.5e-05
                   HHHHHHHTS-.HHHHHHHHHHHHHTTSE CS
  LexA_DNA_bind 29 reiaralglkSpsaveehLkaLerKGyi 56
                    e+++++gl+ p +  e+ ++Ler G+i
     EHU01232.1 32 VELSKRVGLS-PTPCLERVRRLERQGFI 58
                   6999*****7.***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1226.98
//
Query:       EHU01233.1  [L=1153]
Description: FtsK family cell division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-73  246.0   0.0    5.7e-73  245.2   0.0    1.4  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
    3.1e-44  150.7  13.4    4.5e-44  150.2  13.4    1.3  1  FtsK_4TM       4TM region of DNA translocase FtsK/SpoIIIE
      3e-28   97.9   0.0    5.6e-28   97.0   0.0    1.5  1  FtsK_alpha     FtsK alpha domain
    8.9e-28   95.9   0.1    1.7e-27   95.0   0.1    1.5  1  FtsK_gamma     Ftsk gamma domain
      2e-05   23.7   0.0     0.0027   16.7   0.0    2.2  2  AAA_10         AAA-like domain
    0.00026   21.2   0.1    0.00056   20.1   0.1    1.5  1  DUF87          Helicase HerA, central domain
  ------ inclusion threshold ------
      0.016   14.3   0.0       0.03   13.4   0.0    1.4  1  T2SSE          Type II/IV secretion system protein
      0.022   14.2   0.0         15    4.9   0.0    3.2  3  TniB           Bacterial TniB protein
      0.025   13.5   1.2       0.28   10.1   0.0    2.5  3  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.06   12.1   0.0       0.11   11.3   0.0    1.3  1  Adeno_IVa2     Adenovirus IVa2 protein
       0.65    9.4   0.0       0.65    9.4   0.0    2.3  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.2   0.0   3.5e-76   5.7e-73       2     243 .]     772     985 ..     771     985 .. 0.99

  Alignments for each domain:
  == domain 1  score: 245.2 bits;  conditional E-value: 3.5e-76
                   HHHHHTSHHHHT---TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S- CS
  FtsK_SpoIIIE   2 LlevleskkfrtessqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvav 98 
                   L+evl+  kfr+++s+l v lgk+i g+p+v+dl+km+ hllvaG+tgsGKS+++n++ilS+++++tPe+V++i+iD+k++els++e+iphll+ +v
    EHU01233.1 772 LREVLDCPKFRDNPSPLSVVLGKDIAGQPVVADLAKMP-HLLVAGTTGSGKSVGVNAMILSMLYKATPEDVRFIMIDPKMLELSVYEGIPHLLT-EV 866
                   89999*********************************.*******************************************************.** PP

                   B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-......................-----------B-----EEE CS
  FtsK_SpoIIIE  99 atdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaeneritsLsnqgpsygvhvlvtagrelekrpslv 195
                   +td+++a++al++ v eme+ry+l+++ gvr++a+y++++a++ ++++++ ++++                      +  + +  +++ lek+p++v
    EHU01233.1 867 VTDMKDAANALRWSVGEMERRYKLMSALGVRNLAGYNEKVAQADAMGRPIPDPFW----------------------KPGDSMDMTPPVLEKLPYIV 941
                   ******************************************************9......................8999**************** PP

                   EEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES---T CS
  FtsK_SpoIIIE 196 vivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrlsv 243
                   v vde+++L++a +k+    ve++i+Rla+k+raag+Hl+latqr+sv
    EHU01233.1 942 VMVDEFADLMMAVGKK----VEELIARLAQKARAAGIHLVLATQRPSV 985
                   ****************....**************************96 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2  13.4   2.8e-47   4.5e-44       2     171 .]      20     191 ..      19     191 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 2.8e-47
    FtsK_4TM   2 rllkEllgllllllalflllaLlsYspdDpswstsgsaaaavhNwgGrvGAwladlllslfGlsawllvvlllawglrllrrkslerr......llrll 94 
                 r+l E+l++l++l+a++l+++L+s++p+Dpsws+++ +++++hN+gG+vGAwlad+ll++fG+ a++++ ++l +++  +r+++ ++        lrl+
  EHU01233.1  20 RRLLEALLILVALFAIYLMVSLVSFNPSDPSWSQTA-WHEPIHNMGGTVGAWLADTLLFIFGVMAYAIPPVILGLCWIAFRQRDNQDYvdyfaiGLRLI 117
                 7899****************************9995.899******************************************9999666667779**** PP

    FtsK_4TM  95 galllllasaalfalrlasledelpggaGGvlGrllaaalstllgftGatllllvllliglslvlgfswlelaerlg 171
                 g+l l+++ ++++al+ +   d + +++GGv+G l+++a+s ++  +G tl ll+++++g++l++g+swl++aer+g
  EHU01233.1 118 GVLALVVTTCGMAALNAD---DIWYFASGGVIGSLVSNAISPWFSPAGGTLTLLCIWAAGITLYTGWSWLTFAERIG 191
                 ***************999...6999**************************************************97 PP

>> FtsK_alpha  FtsK alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   3.4e-31   5.6e-28       1     101 []     664     764 ..     664     764 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 3.4e-31
  FtsK_alpha   1 LPsldlLeeeekekkkedeeelekkaklieetleefgieakvveisvGPvvtqyevepapgvkvskiaaleddlalaLaaksirieapipGksvvGiev 99 
                 LPsldlL+ +++e++ +d  +le++a+l+e+ l ++ ++a+vv+is+GPv+t++e+++apgvk+++i +l++dla++L+++ +r++++ipGk +vG+e+
  EHU01233.1 664 LPSLDLLTAPPEEEEPVDMFALEQTARLVEARLGDYRVKAEVVGISPGPVITRFELDLAPGVKAARISNLSRDLARSLSTTAVRVVEVIPGKPYVGLEL 762
                 8************9************************************************************************************* PP

  FtsK_alpha 100 Pn 101
                 Pn
  EHU01233.1 763 PN 764
                 *9 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.1   1.1e-30   1.7e-27       2      61 ..    1087    1146 ..    1086    1148 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 1.1e-30
  FtsK_gamma    2 eeDelfeeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskpReVl 61  
                  e D+lf++av++vv++++aS+S +QR++riGYnRAar+i+q+e++GiV+++ ++++ReVl
  EHU01233.1 1087 ELDPLFDQAVAFVVDKRRASISGVQRQFRIGYNRAARIIEQMEAQGIVSSPGHNGNREVL 1146
                  78*********************************************************9 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0027      16      71 ..     803     862 ..     789     879 .. 0.78
   2 !    4.7   0.0    0.0073        12     259     313 ..     959    1014 ..     938    1021 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
      AAA_10  16 gsktnasasliiGdlGnGKSvlakllvlyisllg....gkaliiDpkkerekfketlpei 71 
                     + ++ l+ G +G GKSv ++ ++l ++        + ++iDpk  +   +e +p++
  EHU01233.1 803 ADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAtpedVRFIMIDPKMLELSVYEGIPHL 862
                 55567799****************999877765556669********9877777777764 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0073
      AAA_10  259 kkllkelvRiGRsynaavylvtqsad.DvlkeelknniglklaFretdkeeikkvL 313 
                  ++l+  l  + R+    ++l+tq ++ Dv    +k ni++++aF    k + + +L
  EHU01233.1  959 EELIARLAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTIL 1014
                  345555556668888889*****9765*****************988777776666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.5e-07   0.00056      11      60 ..     798     848 ..     790     849 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.5e-07
       DUF87  11 evpvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkgatililDp 60 
                 + pv  dl k+   Hl++ g+TGsGKS  v  ++ ++l      +++ +++Dp
  EHU01233.1 798 GQPVVADLAKM--PHLLVAGTTGSGKSVGVNAMILSMLYkatPEDVRFIMIDP 848
                 57999999999..*****************87777766548766789999998 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05      0.03     130     163 ..     809     846 ..     794     878 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
       T2SSE 130 glilvsGgTgsGKttllyallk.einks...derivtv 163
                   +lv+G+TgsGK++ ++a++  ++ k    d r++++
  EHU01233.1 809 PHLLVAGTTGSGKSVGVNAMILsMLYKAtpeDVRFIMI 846
                 479**************997540443333435555555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0094        15      33      55 ..     806     828 ..     801     899 .. 0.68
   2 ?    4.7   0.0     0.011        18     109     169 ..     928     988 ..     914     990 .. 0.84
   3 ?   -0.5   0.0      0.42   6.8e+02       4      25 ..    1109    1130 ..    1106    1140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0094
        TniB  33 krmpnlllvGdsnnGKtmivekF 55 
                  +mp+ll++G +  GK++ v+  
  EHU01233.1 806 AKMPHLLVAGTTGSGKSVGVNAM 828
                 68***************977765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
        TniB 109 qqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealral 169
                 +++  +l++l   v+++DE+ +l+ +  +k +e+++ l +  +   i +vl+  +  ++++
  EHU01233.1 928 DMTPPVLEKLPYIVVMVDEFADLMMAVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVI 988
                 5666789999999***********************9999999999999988777666665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.42
        TniB    4 yiradrwigyprakeilerLee 25  
                   ++++  igy+ra++i+e++e+
  EHU01233.1 1109 GVQRQFRIGYNRAARIIEQMEA 1130
                  5778888************985 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       1.5   2.5e+03      74     114 ..     204     243 ..     202     295 .. 0.82
   2 ?   10.1   0.0   0.00017      0.28      15      52 ..     808     849 ..     795     857 .. 0.72
   3 ?    1.2   0.0     0.086   1.4e+02     247     281 ..     942     982 ..     929     985 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
  TrwB_AAD_bind  74 RsaaWsvfaeikeksdfaeiAaalipedggssdpfWaeaar 114
                    Rs   ++++e +e+ d++e A  l  + + ++d++   a r
     EHU01233.1 204 RSRHDEPWHEEDEADDYHESAPVLHAQ-TDDDDDVLLAAPR 243
                    778888999999999999999999999.7777777666555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
  TrwB_AAD_bind  15 tqhilivGttGsGKtqalekllrairarg....draivlDlt 52 
                      h+l++GttGsGK++ +++++ ++  ++     r i +D++
     EHU01233.1 808 MPHLLVAGTTGSGKSVGVNAMILSMLYKAtpedVRFIMIDPK 849
                    459************977777666554443333788888875 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.086
  TrwB_AAD_bind 247 fflDElpaL.....grleel.ksllaegRkfGgavvlglqs 281
                    +++DE+++L     +++eel ++l++++R  G+ +vl+ q 
     EHU01233.1 942 VMVDEFADLmmavgKKVEELiARLAQKARAAGIHLVLATQR 982
                    6889999985555568999725677899**********997 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.6e-05      0.11      91     130 ..     812     851 ..     797     858 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.6e-05
  Adeno_IVa2  91 viyGPtGsGksqllrnlissklisPiPetvifitPekdmi 130
                 ++ G tGsGks  + ++i s l + +Pe v fi  + +m+
  EHU01233.1 812 LVAGTTGSGKSVGVNAMILSMLYKATPEDVRFIMIDPKML 851
                 578*****************************98888776 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.5       2.4     4e+03      27      43 ..     260     277 ..     255     277 .. 0.78
   2 ?    9.4   0.0    0.0004      0.65      15      49 ..    1091    1126 ..    1090    1127 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
  HTH_Tnp_ISL3  27 s.rsvkavArqlgvSwtT 43 
                     ++++avA+   vS+tT
    EHU01233.1 260 AtATRAAVAATAEVSATT 277
                   4479999*9999999998 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0004
  HTH_Tnp_ISL3   15 rleayilellles.rsvkavArqlgvSwtTVwrild 49  
                    +++++++  + ++ +s++ v rq++++ ++  ri+ 
    EHU01233.1 1091 LFDQAVAFVVDKRrASISGVQRQFRIGYNRAARIIE 1126
                    68999999999999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.87u 0.23s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 8217.50
//
Query:       EHU01234.1  [L=203]
Description: outer membrane lipoprotein carrier protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-59  197.8   4.0    1.1e-58  197.6   4.0    1.0  1  LolA       Outer membrane lipoprotein carrier protein LolA
    3.8e-05   23.1   0.3      0.033   13.5   0.0    2.3  2  DUF2092    Predicted periplasmic protein (DUF2092)
  ------ inclusion threshold ------
       0.19   11.8   1.2         10    6.3   0.0    3.3  4  Cuticle_1  Crustacean cuticle protein repeat


Domain annotation for each model (and alignments):
>> LolA  Outer membrane lipoprotein carrier protein LolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   4.0   1.9e-62   1.1e-58       2     165 .]      33     191 ..      32     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 197.6 bits;  conditional E-value: 1.9e-62
                 T-SEEEEEEEEEEE-TTS--EEEEEEEEEEETTTEEEEEE-TTS-EEEEEETTEEEEEETTTTEEEEEEHHHHTTT-GGGGGGS-HHHHTTTEEEEEEE CS
        LolA   2 kvktlsadFvQtvtsgegkkiqetsGklaikrPgkfrweytsPdeqlivsdgktvwlydpdleqvtieslkqalsktplvlLledkaklskdynvsvkk 100
                 kv++++a+F+Q+vt+g+g+++qe++G+l++krP++f+w++t+Pde+ i+sdgk++w+y+p++eq+t++ lk+a+s+tp++l+++++a+++++ynv+   
  EHU01234.1  33 KVNSFHASFTQKVTDGSGANVQEGEGELWVKRPSLFNWHMTAPDESIIISDGKSLWFYNPFVEQATVSLLKNATSNTPFMLIARNQASDWQQYNVK--- 128
                 89**********************************************************************************************... PP

                 ETTEEEEEEEESSS-SSECEEEEEE.ETTEEEEEEEEETT--EEEEEEEEEEES----GGGG--- CS
        LolA 101 eqdldtltlkpkakdanlsritigfdkkgllkqlkvvdaqGqrttitfsnvkenakladdlFkft 165
                  q++d ++l+pk++d nl+++ti+++++g+++q++ v+++Gqr++++++++k n ++++d+F+ft
  EHU01234.1 129 -QQGDKFELTPKKSDGNLKQFTIDVTPDGTINQFSAVEQDGQRSNYQLKSQK-NGPISPDKFTFT 191
                 .***************************************************.**********97 PP

>> DUF2092  Predicted periplasmic protein (DUF2092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.5e-06     0.033      18      77 ..      35      92 ..      17      99 .. 0.83
   2 !    7.6   0.4   0.00038       2.2     181     207 ..     172     197 ..     116     199 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-06
     DUF2092 18 fsvtadttydsvlasgqklqfsasrevkvqrPdklrvdtsgdekdrefyyDGktftlydk 77
                 s++a+ t++++  sg  +q + ++e++v+rP  +  ++++++ ++ +++DGk++  y++
  EHU01234.1 35 NSFHASFTQKVTDGSGANVQEG-EGELWVKRPSLFNWHMTAPD-ESIIISDGKSLWFYNP 92
                4899*******99999999865.79**************9986.57999*****999876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00038
     DUF2092 181 taefsdWnldpeipedtFrftpPkgAr 207
                 + +++  + + +i++d F+ftpPkg +
  EHU01234.1 172 NYQLK-SQKNGPISPDKFTFTPPKGVT 197
                 33333.2345569***********965 PP

>> Cuticle_1  Crustacean cuticle protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.7     1e+04      35      39 ..      50      54 ..      49      54 .. 0.66
   2 ?   -1.3   0.0      0.39   2.3e+03      30      36 ..      79      85 ..      77      89 .. 0.71
   3 ?    3.7   0.0     0.011        65       9      19 ..     142     152 ..     140     153 .. 0.85
   4 ?    6.3   0.0    0.0017        10       6      17 ..     152     163 ..     151     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
   Cuticle_1 35 GknvQ 39
                G nvQ
  EHU01234.1 50 GANVQ 54
                77777 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.39
   Cuticle_1 30 aVlsdGk 36
                ++ sdGk
  EHU01234.1 79 IIISDGK 85
                6777776 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.011
   Cuticle_1   9 DGtnvqfthgv 19 
                 DG++ qft +v
  EHU01234.1 142 DGNLKQFTIDV 152
                 9******9887 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0017
   Cuticle_1   6 itpDGtnvqfth 17 
                 +tpDGt  qf++
  EHU01234.1 152 VTPDGTINQFSA 163
                 89********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1497.86
//
Query:       EHU01235.1  [L=447]
Description: recombination protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-64  216.1   0.4    5.8e-64  215.1   0.4    1.5  1  MgsA_C           MgsA AAA+ ATPase C terminal
    9.3e-24   83.6   0.1    3.3e-23   81.8   0.0    2.0  1  AAA_assoc_2      AAA C-terminal domain
    1.7e-16   60.8   0.1    1.3e-15   58.0   0.0    2.1  2  AAA              ATPase family associated with various cellul
    2.3e-15   56.7   0.0    4.5e-15   55.7   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.5e-08   33.6   0.2    4.3e-07   30.0   0.1    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
    7.1e-07   29.8   0.3       0.02   15.3   0.0    3.4  3  AAA_16           AAA ATPase domain
    7.5e-07   28.7   0.3     0.0017   17.8   0.1    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    6.4e-06   26.0   0.0       0.01   15.5   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    9.3e-06   26.0   3.0      0.093   13.0   0.0    3.5  4  AAA_22           AAA domain
    0.00011   22.5   0.1     0.0099   16.2   0.1    2.3  2  AAA_19           AAA domain
    0.00036   20.4   0.0     0.0012   18.7   0.0    1.9  1  AAA_3            ATPase family associated with various cellul
    0.00046   20.3   0.0    0.00085   19.5   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0007   19.6   0.0     0.0015   18.6   0.0    1.5  1  AAA_14           AAA domain
    0.00099   18.9   0.2      0.019   14.7   0.2    2.4  1  AAA_30           AAA domain
     0.0012   18.6   0.0     0.0027   17.5   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
     0.0015   18.7   0.0     0.0042   17.2   0.0    1.7  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0023   18.0   0.3        0.6   10.1   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
     0.0027   17.5   0.0      0.088   12.6   0.0    2.3  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
     0.0074   16.5   0.0      0.018   15.3   0.0    1.7  1  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.029   14.9   0.0    1.8  1  AAA_18           AAA domain
      0.018   14.2   0.0      0.031   13.4   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.019   15.5   0.0      0.035   14.6   0.0    1.6  1  ABC_tran         ABC transporter
      0.022   13.8   0.0        0.6    9.1   0.0    2.3  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.028   14.2   0.0       0.05   13.3   0.0    1.4  1  AAA_24           AAA domain
      0.028   14.6   0.1      0.069   13.3   0.1    1.7  1  AAA_33           AAA domain
      0.054   13.3   0.1       0.13   12.0   0.0    1.7  1  AAA_11           AAA domain
       0.06   12.9   0.0       0.18   11.3   0.0    1.8  1  AAA_25           AAA domain
      0.062   12.3   0.0       0.12   11.4   0.0    1.5  1  T2SSE            Type II/IV secretion system protein
      0.073   13.5   0.0       0.43   11.0   0.0    2.2  2  RNA_helicase     RNA helicase
       0.15   11.7   0.1       0.62    9.7   0.0    2.1  3  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.16   11.9   0.1       0.79    9.6   0.0    2.1  2  NACHT            NACHT domain
       0.16   12.4   0.1       0.44   11.0   0.1    1.9  1  AAA_17           AAA domain
       0.27   10.5   0.5        4.2    6.5   0.6    2.4  2  DUF2075          Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.4   1.1e-66   5.8e-64       1     166 [.     268     434 ..     268     435 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.1 bits;  conditional E-value: 1.1e-66
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH------ CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekksl 99 
                 GS pdAAly++ar+++aG dp ++aRRl++iAseD+G+Adp+ +q+a+aa+++++r+G  E++ a+aqa+vyla+apKSna+y+A+k+a++d++++++ 
  EHU01235.1 268 GSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYNAFKAAMRDARDHPDF 366
                 8************************************************************************************************** PP

                 ---GGGST...........T-T---GGG--SS--.----S-CCG--..--------HHHHHHH-XXX. CS
      MgsA_C 100 evPlhLrnaptklakklgygkgYkyphdypegvv.kqqylpdelkkkkfYepterglekkikerlekl 166
                 +vP+hLrnaptkl+k++g g++Y+y+hd+ ++++  + y+p e++++++Y+pt+rgle ki e+l++l
  EHU01235.1 367 DVPDHLRNAPTKLMKEMGLGESYRYAHDEANAYAaGEVYFPPEMAQTRYYHPTQRGLEGKIGEKLAWL 434
                 *********************************87899*************************99875 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0     6e-26   3.3e-23       3      81 .]     188     267 ..     186     267 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 6e-26
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeak.egkieitledleealqrkalryDkagdehYdliSAlhKSiR 81 
                  +++ l d++++++ael +GDaR+aLn+LE++a++ae++ +gk+e+t + l+e++ ++++r+D++gd +YdliSAlhKS+R
   EHU01235.1 188 SDILLPDNTRRMIAELVNGDARRALNTLEMMADMAETNgTGKRELTPQLLTEVAGERSARFDNKGDRFYDLISALHKSVR 267
                  56788999***************************999999**************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.4e-18   1.3e-15       1     126 [.      53     159 ..      53     165 .. 0.89
   2 ?    0.3   0.1       1.6   8.5e+02      44      98 ..     168     224 ..     163     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2.4e-18
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlteldgv 96 
                 ++l+GppGtGKT+la+ +a+  ++++ +is+ +          k+ire +++a+ ++   + +ilf+DE+++++ks+           ++++l+++++ 
  EHU01235.1  53 MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSG-------VKEIREAIERARLSKqagRRTILFVDEVHRFNKSQ-----------QDAFLPHIEDG 133
                 79************************999998777.......89999999999766666667***************...........**********9 PP

                 TTSSSTEEEEEEESS..GGGSTHHHHSTTSSE CS
         AAA  97 kkkeskvivigatnr..pdkldpallrgRfdr 126
                 +      ++igat++    +l++all +R+ +
  EHU01235.1 134 TI-----TFIGATTEnpSFELNSALL-SRARV 159
                 88.....8*****99888999*****.88765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  44 kkirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 ++i++++++a + a     +  il+ D+  +++ +     +++++r++n+L  + d  ++
  EHU01235.1 168 EDIEQVLDQAMQDAsrgygNSDILLPDNTRRMIAEL---VNGDARRALNTLEMMADMAET 224
                 677778877777777777666888888888888777...677777888877666555554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   8.4e-18   4.5e-15       1     116 [.      20     138 ..      20     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 8.4e-18
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklk....itsgP.vlekagdlaalltnleekdvlfideih 94 
                 +rP +l++yigq+++ +  k + +a ++   +l  ++l GpPG Gkttla+iia+  +++++    +tsg   + +a + a l ++  ++ +lf+de+h
  EHU01235.1  20 MRPATLKQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEIIAHYGNADVErisaVTSGVkEIREAIERARLSKQAGRRTILFVDEVH 116
                 79************98876665555443..467889******************977777651112566642588888999999999************ PP

      RuvB_N  95 rlsraveevlysamedfrldiv 116
                 r++++ ++ + + +ed ++  +
  EHU01235.1 117 RFNKSQQDAFLPHIEDGTITFI 138
                 ****************998754 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   7.9e-10   4.3e-07       2     117 ..      53     162 ..      52     181 .. 0.75
   2 ?   -1.5   0.0       4.3   2.3e+03       8      20 ..     225     237 ..     198     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 7.9e-10
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                 ++L GppGtgK++lae +a+  n+ ve +        ++++  +e            l ++a +  il++DEv+r +++ ++++l+ +e+ ++ +   +
  EHU01235.1  53 MILWGPPGTGKTTLAEIIAHYGNADVERISAVT-SGVKEIREAIE---------RARLSKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGAT 141
                 79********************99999887655.34556666666.........69999********************************99876555 PP

                 SEE.E---.........-EEE CS
       AAA_5 101 elv.kakndd.ller..frvi 117
                 ++  +++ ++ ll+r  ++++
  EHU01235.1 142 TENpSFELNSaLLSRarVYLL 162
                 443145555555555544444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.3
                 SSSSHHHHHHHGG CS
       AAA_5   8 pGtgKselaerla 20 
                  GtgK+el+ +l+
  EHU01235.1 225 NGTGKRELTPQLL 237
                 4888888877665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.7e-05      0.02      19      46 ..      45      72 ..      30      84 .. 0.83
   2 !    7.9   0.0     0.007       3.8     121     156 ..      93     128 ..      73     134 .. 0.71
   3 ?    2.6   0.0      0.28   1.5e+02      34     107 ..     226     323 ..     224     368 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-05
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellr 46
                + +g  ++++l G++G+GK++l++ +++
  EHU01235.1 45 IEAGHLHSMILWGPPGTGKTTLAEIIAH 72
                56677799***************88775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.007
      AAA_16 121 ellkrllallsrderplvlvlDdlqwadeaslql.la 156
                 e++ r+ +l+++ +r ++l++D+++++  +++++ l+
  EHU01235.1  93 EAIERA-RLSKQAGRRTILFVDEVHRFNKSQQDAfLP 128
                 333333.355666667*************99999676 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.28
      AAA_16  34 GvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.......................... 106
                 G+GK  l  +ll+++ +++   +  k d++      + l++al + ++        + +++ +w +++ +a +                          
  EHU01235.1 226 GTGKRELTPQLLTEVAGERSARFDNKGDRF------YDLISALHK-SVRGS-----APDAALYWYARIITAGGdplyvarrllaiasedvgnadprgmq 312
                 999999999999999999544444444444......445555533.44333.....3345888999888888877777777777666666666666666 PP

      AAA_16 107 ..........a 107
                            
  EHU01235.1 313 vaiaawdcftR 323
                 66666666663 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1     3e-06    0.0017      19      43 ..      47      71 ..      25     100 .. 0.80
   2 !    8.8   0.0    0.0018      0.95     107     142 ..     107     142 ..      95     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3e-06
  Mg_chelatase 19 aaGgHnlllvGppGsGKtmlakrlp 43
                  a   H+++l GppG+GKt la+ ++
    EHU01235.1 47 AGHLHSMILWGPPGTGKTTLAEIIA 71
                  4446****************98654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0018
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtisraka 142
                   + +Lf+DE+  f+++  +++   +edg++t   a++
    EHU01235.1 107 RTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATT 142
                   679**************************9765544 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0043       2.3      23      51 ..      51      79 ..      29     100 .. 0.76
   2 !   15.5   0.0   1.9e-05      0.01      93     131 ..     106     144 ..      99     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0043
                     S-EEEECSTTSSHHHHHHHHHHHSTTTTS CS
  Sigma54_activat 23 lsvlitGesGtGKellaraiheaskrkek 51
                      s+++ G  GtGK++la+ i +  + + +
       EHU01235.1 51 HSMILWGPPGTGKTTLAEIIAHYGNADVE 79
                     467889************99776655544 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.9e-05
                      TTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEE CS
  Sigma54_activat  93 dgGtlfLDeigelplelQekLlrvlqegevervGsskei 131
                         +lf+De+++++ + Q  +l  +++g+++ +G+++e 
       EHU01235.1 106 RRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTEN 144
                      4679******************************98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00017     0.093       7      25 ..      52      70 ..      47      80 .. 0.87
   2 !    8.2   0.0    0.0054       2.9      75     112 ..      88     127 ..      79     143 .. 0.76
   3 ?    3.1   0.1       0.2   1.1e+02      71     118 ..     166     221 ..     131     238 .. 0.74
   4 ?   -1.5   0.0       5.1   2.8e+03      47      86 ..     223     266 ..     219     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00017
      AAA_22  7 ilvvtGesGtGKTtllrrl 25
                +++++G++GtGKTtl++ +
  EHU01235.1 52 SMILWGPPGTGKTTLAEII 70
                689************9865 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0054
      AAA_22  75 seellealeqalrarav..ielliiDEaqhlrseealeeL 112
                  +e++ea+e+a  ++++  + +l +DE++++++ ++  +L
  EHU01235.1  88 VKEIREAIERARLSKQAgrRTILFVDEVHRFNKSQQDAFL 127
                 56788888888888888899***********844444444 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.2
      AAA_22  71 erlsseell.ealeqalraravielliiDEaqhlr....s...eealeeLrsllnl 118
                  + + e++l +a+++a+r ++   +l+ D+  +++    +    +al++L ++++ 
  EHU01235.1 166 TTEDIEQVLdQAMQDASRGYGNSDILLPDNTRRMIaelvNgdaRRALNTLEMMADM 221
                 3556777777999*****999999******99988766515679999999988886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 5.1
      AAA_22  47 lpsstsskdllrellralglelka....erlsseellealeqal 86 
                  +++t+ ++l  +ll ++  e++a    ++++  +l++al++ +
  EHU01235.1 223 ETNGTGKRELTPQLLTEVAGERSArfdnKGDRFYDLISALHKSV 266
                 57888999999999999999999966655555555556555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.8e-05    0.0099       4      58 ..      44      94 ..      42     104 .. 0.73
   2 ?    4.9   0.0     0.055        30      90     137 ..      94     140 ..      84     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-05
      AAA_19  4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakel 58
                a+ea + + +++ ++pGtGKT+ l +i+a++ ++    +e+i +v+   +  +e 
  EHU01235.1 44 AIEAGHLHSMILWGPPGTGKTT-LAEIIAHYGNAD---VERISAVTSGVKEIREA 94
                56556667899*********96.788999998887...47888888765544444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.055
      AAA_19  90 lleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGD 137
                 ++e+a+ +k+  ++++l+vDE+   +  +q ++l  +  +++ ++++G 
  EHU01235.1  94 AIERARLSKQAGRRTILFVDEVHRFNkSQQDAFLPHIE-DGT-ITFIGA 140
                 4444455566667789**********888889999888.777.999995 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.3e-06    0.0012       2      99 ..      53     143 ..      51     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.3e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 ++l g PG++kt+l++ +a+  +++++ri   +        G++ ++e+ ++ +++k +    +l++de+ r +   q a+l  +e+ ++t+ g+t++
  EHU01235.1  53 MILWGPPGTGKTTLAEIIAHYGNADVERISAVT-------SGVKEIREAIERARLSKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTE 143
                 578899**********************97543.......5888888888888888888889*****************************9998876 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-06   0.00085      25     115 ..      54     149 ..      45     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.6e-06
                      EEEEETT--HHHHHHCC--TTS-EE.--SSTTHHHH-HHHHHHHT.......TTSEEEEEE-TT--HHHHHHHHHHHHHHTTTT-EEEEEEEE- CS
  Sigma54_activ_2  25 fltGekGsgkelvArlLhknsgpwl.eifvverlaklpldlleqa.......kggtLylkdiadlskaeqkeLlellakaeksslrlVstsskd 110
                       l G++G+gk++ A+++++ +  ++  i  v +++k+  + +e+a       +  +L++ +++ ++k++q   l  ++ +    + ++ ++ ++
       EHU01235.1  54 ILWGPPGTGKTTLAEIIAHYGNADVeRISAVTSGVKEIREAIERArlskqagRRTILFVDEVHRFNKSQQDAFLPHIEDG---TITFIGATTEN 144
                      588**************99877655168888899998877777766666668899***************9998888776...66666666665 PP

                      TTT.. CS
  Sigma54_activ_2 111 leqll 115
                         +l
       EHU01235.1 145 PSFEL 149
                      55555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.7e-06    0.0015       5     125 ..      53     165 ..      51     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewek.alkslvdegknldvivtGSns 102
                 +++ G+  +GKTtl++ ++ ++   + ++  i+  +   k++++   ++++ l+k  + ++t+lf DE+++ ++ ++ a    +++   + + + G   
  EHU01235.1  53 MILWGPPGTGKTTLAEIIA-HYG--NADVERISAVTSGVKEIREA--IERARLSKQAG-RRTILFVDEVHRFNKSQQdAFLPHIED---GTITFIGATT 142
                 688999********75555.555..57777777777777777755..66777777556.99**********987654122222222...3566666666 PP

      AAA_14 103 kllskeiatslagrvaeielypl 125
                  + s e+++ l  r+ ++ l  l
  EHU01235.1 143 ENPSFELNSALLSRARVYLLKSL 165
                 66666666666666666666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2   3.5e-05     0.019      21     130 ..      53     146 ..      42     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.5e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekagakv 119
                 ++l Gp+GtGKtt+ + +++  +a+ +r+   +      k+++e+++      a+l k      +  ++t+l vDE+   + +q +a+l ++e+   ++
  EHU01235.1  53 MILWGPPGTGKTTLAEIIAHYGNADVERI---SAVTSGVKEIREAIE-----RARLSK------QAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTI 135
                 7899********98777776666554444...444444566775543.....333332......223568888888888888888888888877..667 PP

      AAA_30 120 ilvGDerQlas 130
                  ++G +   +s
  EHU01235.1 136 TFIGATTENPS 146
                 77776665555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.9e-06    0.0027      49     127 ..      52     125 ..      47     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.9e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaea 127
                 +++l Gp+G+GK+ la  +++ + ++  +++     ++ + +k  r+  + ar  k+  + ++l +D++   + +q++a
  EHU01235.1  52 SMILWGPPGTGKTTLAEIIAHYGNADVERIS-----AVTSGVKEIREAIERARLSKQAGRRTILFVDEVHRFNKSQQDA 125
                 689*****************99877766655.....4444444455555555666677788889999988777777765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.7e-06    0.0042       5     109 ..      52     136 ..      49     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.7e-06
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 s++l gp g+Gkt la+ +a + ++     + r+ a +        + + + i  +   ++a  + i+++DE+ +  +             q+++L+ +
  EHU01235.1  52 SMILWGPPGTGKTTLAEIIAHYGNA----DVERISAVTSGV-----KEIREAIERARLSKQAGRRTILFVDEVHRFNK-----------SQQDAFLPHI 130
                 78899******************96....788888877777.....77888888899999999999************...........7788999999 PP

                 H--EE- CS
       AAA_2 104 eggtlt 109
                 e+gt+t
  EHU01235.1 131 EDGTIT 136
                 999998 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.021        11      25      50 ..      51      75 ..      26      85 .. 0.77
   2 !   10.1   0.0    0.0011       0.6     115     149 ..      92     122 ..      75     144 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.021
                SEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII 25 krglikmaTGtGKTlvaaklierllk 50
                + ++++ + GtGKT + a++i+++ +
  EHU01235.1 51 HSMILWGPPGTGKTTL-AEIIAHYGN 75
                46789*********65.677776655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0011
                 HHTH........HHHTTT-SEEEEETGGGTTS.TT CS
      ResIII 115 dadseeeeeeseellrdrfdviiiDEaHrlgakks 149
                  +++   e+++ +++ +r  ++++DE+Hr+++ ++
  EHU01235.1  92 REAI---ERARLSKQAGRRTILFVDEVHRFNK-SQ 122
                 3333...8888999999999***********9.43 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15        83       9      42 ..      41      73 ..      36      82 .. 0.83
   2 !   12.6   0.0   0.00016     0.088      79     161 ..      86     164 ..      69     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
  DNA_pol3_delta2  9 lskalksgrlahayLfeGdegigkkelalnlaka 42
                     l +a++ g+l h++++ G+ g+gk +la  +a+ 
       EHU01235.1 41 LPRAIEAGHL-HSMILWGPPGTGKTTLAEIIAHY 73
                     6678888888.577889***********999875 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00016
  DNA_pol3_delta2  79 kersikldqirelieelsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnkl..LktirSRcqelkfsp 161
                      +     + +ire ie++  + + +++ i+ ++++ + +ks + a+L  +E+    ++fi  t+++ ++     + SR  ++ +++
       EHU01235.1  86 S----GVKEIREAIERARLSKQAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFelNSALLSRARVYLLKS 164
                      4....7899*****************************************97..5555555544444332677888888877776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.3e-05     0.018       3      28 ..      54      79 ..      52     131 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.3e-05
      AAA_28  3 vitGgestGKTtlleaLaargypvvp 28
                ++ G+++tGKTtl+e +a  g   v+
  EHU01235.1 54 ILWGPPGTGKTTLAEIIAHYGNADVE 79
                789***************66443333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.4e-05     0.029       2      21 ..      54      73 ..      53     131 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.4e-05
      AAA_18  2 lltGtpGvGKttlakeLskr 21
                +l G+pG+GKttla+ ++  
  EHU01235.1 54 ILWGPPGTGKTTLAEIIAHY 73
                688************99654 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-05     0.031      54     122 ..      51     122 ..      21     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-05
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellr...erperfilfvDDLs.Feeee 122
                 + ++LwG  GtGK +l   ++++y ++ +  i    + +ke+ + +e  r   ++ +r ilfvD +  F++++
  EHU01235.1  51 HSMILWGPPGTGKTTLAE-IIAHYGNADVERISAVTSGVKEIREAIERARlskQAGRRTILFVDEVHrFNKSQ 122
                 6799*********99976.56677777777777777788888877776554437889*******985365554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.4e-05     0.035      14      62 ..      53     101 ..      44     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.4e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeig 62 
                 + + G+ G+GK+tL++++a+  + + ++i      +ke+++ + r++++
  EHU01235.1  53 MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERARLS 101
                 5689****************99999999977666666644444444443 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0011       0.6     117     136 ..      53      72 ..      34      77 .. 0.91
   2 ?    2.2   0.0      0.14        76      86     136 ..     278     339 ..     223     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
   Parvo_NS1 117 vwfyGpantGktnlaeaIak 136
                   ++Gp+ tGkt lae Ia+
  EHU01235.1  53 MILWGPPGTGKTTLAEIIAH 72 
                 5789**************98 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.14
   Parvo_NS1  86 ykllslngynpvevgqvllawlskqlgkrntvwfy............GpantGktnlaeaIak 136
                 y+ + + g +p++v+  lla++s++ g+ +  ++             Gpa+ G   +a+aI++
  EHU01235.1 278 YARIITAGGDPLYVARRLLAIASEDVGNADPRGMQvaiaawdcftrvGPAE-GERAIAQAIVY 339
                 5556677899**************999766555555557788899988885.88889998876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.3e-05      0.05       4      22 ..      52      70 ..      51     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.3e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                +++++Gp+g+GKTtla  +
  EHU01235.1 52 SMILWGPPGTGKTTLAEII 70
                589************9866 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   0.00013     0.069       3      30 ..      54      83 ..      53     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00013
      AAA_33  3 llvGlpGsGKstlaerllkklg...avllss 30
                +l G+pG+GK+tlae ++ + g   ++++s 
  EHU01235.1 54 ILWGPPGTGKTTLAEIIA-HYGnadVERISA 83
                788***********9764.222244666665 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00024      0.13      19      39 ..      52      71 ..      37     114 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
      AAA_11 19 itliqGPPGtgKTktivells 39
                  +++GPPGtgKT+  +e+++
  EHU01235.1 52 SMILWGPPGTGKTTL-AEIIA 71
                5789*********64.34443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00034      0.18      27      50 ..      47      67 ..      24      73 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
      AAA_25 27 kgllpagelallaGapgtGKttla 50
                 g+l   +  +l+G+pgtGKttla
  EHU01235.1 47 AGHL---HSMILWGPPGTGKTTLA 67
                4555...4789***********98 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00023      0.12     129     164 ..      50      85 ..      17     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
       T2SSE 129 rglilvsGgTgsGKttllyallkeinksderivtvE 164
                   ++++ G+ g+GKttl+ ++ ++ n++ eri  v 
  EHU01235.1  50 LHSMILWGPPGTGKTTLAEIIAHYGNADVERISAVT 85 
                 4578999********************999998875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00079      0.43       2      20 ..      54      72 ..      53      90 .. 0.84
   2 ?   -0.8   0.0       3.7     2e+03       7      23 ..     225     241 ..     163     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00079
  RNA_helicase  2 wlyGpsgeGKStlakeLak 20
                  +l+Gp+g+GK+tla+ +a+
    EHU01235.1 54 ILWGPPGTGKTTLAEIIAH 72
                  799***********99876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.7
  RNA_helicase   7 sgeGKStlakeLakall 23 
                   +g+GK  l+ +L ++++
    EHU01235.1 225 NGTGKRELTPQLLTEVA 241
                   36777777777666666 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0011      0.62      17      78 ..      53     114 ..      46     142 .. 0.85
   2 ?   -2.7   0.0       7.2   3.9e+03      42      60 ..     335     353 ..     330     360 .. 0.77
   3 ?   -3.1   0.0       9.2     5e+03     127     150 ..     413     436 ..     409     441 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
                  EEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSS.GGGGEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  ATP-synt_ab  17 tlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegt.imkrtvlvant 78 
                  +++ g  g+Gkt++++ ++++ n+d +  + ++    +e++e +e+ + ++ + +rt+l++ +
   EHU01235.1  53 MILWGPPGTGKTTLAEIIAHYGNAD-VERISAVTSGVKEIREAIERARLSKqAGRRTILFVDE 114
                  5678999**************9999.7777788888899999999998855588999998866 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.2
                  SEEEEEEESEEHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  42 daiiyvgiGergnevaevl 60 
                  +ai+y ++  ++n v + +
   EHU01235.1 335 QAIVYLACAPKSNAVYNAF 353
                  489*****99999887665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9.2
                  HTTTSBEGGGSBTTHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 127 rlgempadqgypaylgaklaslyE 150
                       p+++g  +++g kla l E
   EHU01235.1 413 TRYYHPTQRGLEGKIGEKLAWLAE 436
                  55567999***********99887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0015      0.79       3      21 ..      53      71 ..      51      76 .. 0.89
   2 ?   -1.0   0.0       2.7   1.5e+03     137     165 ..     152     180 ..     136     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0015
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                +il G++G GKTtL++ +a
  EHU01235.1 53 MILWGPPGTGKTTLAEIIA 71
                8999***********9887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.7
                 TTSSCE..EEEE--TCCHHHHHHHHCTTT CS
       NACHT 137 eqleeaivlevegfsesrrkqlvrkyfsd 165
                  +l++a+v+ +++++ ++++q++ + ++d
  EHU01235.1 152 ALLSRARVYLLKSLTTEDIEQVLDQAMQD 180
                 4677779999**********999877665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0008      0.44       2      39 ..      57     100 ..      56     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0008
                 E-TTSSHHHHHHHHHHHH......TEEEEEHH.HHHHHHHHTTTS CS
      AAA_17   2 GgPGsGKgtqceklveky......gfthlsaG.dllreeakrggl 39 
                 G+PG GK+t++ ++  +y       ++ ++ G   +re ++r  l
  EHU01235.1  57 GPPGTGKTTLA-EIIAHYgnadveRISAVTSGvKEIREAIERARL 100
                 9**********.777777333222333333332445555554444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6    0.0077       4.2       8      82 ..      57     123 ..      51     131 .. 0.49
   2 ?    5.8   0.1     0.013       6.8      64     106 ..      81     124 ..      71     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0077
     DUF2075   8 GvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaee 82 
                 G +GtGKt ++  +++   + + er +++ s+    v+ +rea+++ +     k+a ++   f+ ++++f+k ++
  EHU01235.1  57 GPPGTGKTTLAEIIAHYG-NADVERISAVTSG----VKEIREAIERAR---LSKQAGRRTILFVDEVHRFNKSQQ 123
                 777777777766666655.3344444444443....444444444433...333344444445555554444444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
     DUF2075  64 feklssfinnlsef.kkaeekkeepkedvvivDEAhrlltksdq 106
                 ++ ++s +++++e  ++a  +k+  + +++ vDE hr +++++ 
  EHU01235.1  81 ISAVTSGVKEIREAiERARLSKQAGRRTILFVDEVHRFNKSQQD 124
                 444555555555557789999*****************994443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.63u 0.33s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 2881.52
//
Query:       EHU01236.1  [L=430]
Description: seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-38  132.8   0.0    1.9e-38  132.2   0.0    1.3  1  tRNA-synt_2b   tRNA synthetase class II core domain (G, H, P,
    2.1e-32  111.6   2.2    3.8e-32  110.7   2.2    1.4  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.027   14.6   6.0       0.51   10.5   4.4    2.5  2  Cep57_CLD_2    Centrosome localisation domain of PPC89
      0.044   12.7   1.2      0.069   12.0   1.2    1.2  1  Spc7           Spc7 kinetochore protein
       0.12   12.5   4.8      0.046   13.9   2.1    1.7  2  Tropomyosin_1  Tropomyosin like
       0.18   11.1   1.5       0.38   10.1   1.5    1.5  1  GAS            Growth-arrest specific micro-tubule binding
        0.2   12.1   4.6       0.63   10.5   4.6    1.9  1  ZapB           Cell division protein ZapB


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   7.6e-42   1.9e-38       6     179 .]     227     406 ..     222     406 .. 0.94

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 7.6e-42
                   TTSEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   6 rndreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglef 98 
                    +   y+L+Pt+e ++++l+rde++ ++ LPlkl++ ++++R E+     d+rGL+R+++F++ + + ++a++++ d l++l+  ++++++ l l++
    EHU01236.1 227 SESSHYALIPTAEVPLTNLVRDEIVEEESLPLKLTAHTPCFRSEAGsygrDTRGLIRMHQFDKVEMVQIVAPETSMDALEELVGHAEKVLQLLNLPY 323
                   45689******************999999****************66999*********************************************** PP

                   EEEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTS.SEEEEEEEEEE.EEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxx RF
  tRNA-synt_2b  99 raiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldenn.reksvimicaa.igveRllsaileqn 179
                   r+++++ +++ + + +++++e++ + ++ ++ei+++++ g+ +++r++a++ ++++ + + v++++ + ++v R+l a+le++
    EHU01236.1 324 RKVLLCSGDMGFGATKTYDLEVWLPAQNTYREISSCSNMGDFQARRMQARTRNKQDkKPRLVHTLNGSgLAVGRTLVAVLENY 406
                   ******999999*************************************887766637899****9999************96 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   2.2   1.5e-35   3.8e-32       1     108 []       1     107 [.       1     107 [. 0.99

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1.5e-35
                   ---HHHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                   MLD++l+r++p+av+ekl++R ++k+dv+ l +l+e+r+ lqve+e+lqaerN+ sk+Ig+ak+++ed+e l++ev++l+e+l+a+  el+el++++
    EHU01236.1   1 MLDPNLLRNEPDAVAEKLARR-GFKLDVEMLRSLEERRKVLQVETENLQAERNSRSKSIGQAKARGEDIEPLRQEVNSLGERLDAAIPELDELQNQI 96 
                   ******************988.6************************************************************************** PP

                   HHHHCTS---- CS
  Seryl_tRNA_N  98 eklllaiPNip 108
                    ++ la+PN+p
    EHU01236.1  97 RDFSLALPNLP 107
                   *********98 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.4    0.0002      0.51      12      59 ..      30      80 ..      27      83 .. 0.87
   2 ?    7.2   0.1    0.0021       5.5      27      54 ..      69      96 ..      65      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
  Cep57_CLD_2 12 LdsltrklqvheeelkrLnkERdsalrqLgvA...yeelneLkaevealrk 59
                 L sl+++  v + e ++L +ER+s  +++g+A    e+++ L++ev++l +
   EHU01236.1 30 LRSLEERRKVLQVETENLQAERNSRSKSIGQAkarGEDIEPLRQEVNSLGE 80
                 78999999***********************7444689999****999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0021
  Cep57_CLD_2 27 krLnkERdsalrqLgvAyeelneLkaev 54
                 + L++E +s   +L  A++el+eL+++ 
   EHU01236.1 69 EPLRQEVNSLGERLDAAIPELDELQNQI 96
                 6699999*****************9976 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   2.7e-05     0.069     167     232 ..      28      99 ..      12     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
        Spc7 167 ellpeleeekaeleeeleklqeaaeeles......idkeeLeelreelaelkaeieekkkelaelqeqleel 232
                 e+l +lee+++ l+ e e+lq+++++ ++         e++e lr+e+++l + +++   el+elq+q+ + 
  EHU01236.1  28 EMLRSLEERRKVLQVETENLQAERNSRSKsigqakARGEDIEPLRQEVNSLGERLDAAIPELDELQNQIRDF 99 
                 68899999999*********9955544334444545589999999999999999999999999999998775 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.1   1.8e-05     0.046      37     108 ..      30     101 ..      12     106 .. 0.93
   2 ?   -3.7   0.0       4.6   1.2e+04      85      99 ..     223     237 ..     221     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
  Tropomyosin_1  37 iksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdv 108
                    ++sL+++ ++l+ e e+l+++ +   ++  +++ +  + e l + ++ L e l+ +  +L e  +++r+ ++
     EHU01236.1  30 LRSLEERRKVLQVETENLQAERNSRSKSIGQAKARGEDIEPLRQEVNSLGERLDAAIPELDELQNQIRDFSL 101
                    79***************************************************************9999776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.6
  Tropomyosin_1  85 LEeeleesdkkLket 99 
                    LEee e+s   L  t
     EHU01236.1 223 LEEESESSHYALIPT 237
                    899999998777655 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   0.00015      0.38      61     131 ..      28      98 ..      17     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
         GAS  61 epLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfea 131
                 e L+ +ee ++ L+ + +n + +++s  ++  + k   + ++ l++e ++l +r++++  e del+++ ++
  EHU01236.1  28 EMLRSLEERRKVLQVETENLQAERNSRSKSIGQAKARGEDIEPLRQEVNSLGERLDAAIPELDELQNQIRD 98 
                 789999***********************************************************998765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.6   0.00024      0.63      21      71 .]      38      91 ..      26      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
        ZapB 21 tlLqmeieeLkeeneelkeenrele...eeneqlkeereawqerlkkLLgklee 71
                + Lq e e L++e ++ ++ + + +   e +e l++e +++ erl++ + +l+e
  EHU01236.1 38 KVLQVETENLQAERNSRSKSIGQAKargEDIEPLRQEVNSLGERLDAAIPELDE 91
                5688899999999888888888888999********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2962.74
//
Query:       EHU01237.1  [L=384]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-29  102.6  67.5    1.4e-19   70.3  38.3    2.0  2  MFS_1       Major Facilitator Superfamily
    5.1e-14   52.4  38.4      7e-14   51.9  38.4    1.2  1  MFS_4       Uncharacterised MFS-type transporter YbfB
    7.3e-07   28.4  12.0    7.3e-07   28.4  12.0    3.7  3  Sugar_tr    Sugar (and other) transporter
    1.4e-05   24.2   7.6    1.4e-05   24.2   7.6    2.1  2  MFS_1_like  MFS_1 like family
    1.5e-05   23.7  11.6    1.5e-05   23.7  11.6    3.0  3  MFS_2       MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3  38.3   3.9e-23   1.4e-19       1     291 [.      11     284 ..      11     285 .. 0.81
   2 !   46.0  21.2   9.2e-16   3.3e-12       6     177 ..     212     377 ..     207     383 .. 0.90

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 3.9e-23
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 ll++++l++ ++++l++++pl+l++d  ++  ++g + + y+ g ++++l++G+l+ r+G  r + l+  lfal++l++l +  ++w++ +lr+ +G+g
  EHU01237.1  11 LLCGLLLMTVSIAVLNTLVPLWLTHD-ALATWQVGVVSSSYYTGNLLGTLVAGWLIKRYGFNRSYYLATGLFALSTLCMLaL-EGFWAWTLLRFTAGIG 107
                 68999****************99999.668888999************************8776666666666662444425.**************** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                 +++++ ++ +++    + ++rg+ ++ +++ + lG++ g ll + l++ l    +++ ++++s+++ ++    +++   ++ +++ ++         ++
  EHU01237.1 108 CALVWVVVESALLCSGTVRNRGQLLAAYMIVYYLGTVAGQLLVSKLSTELLSVIPWVTATVISAILPLI----FTQVSANSDTVEATPG------GRIL 196
                 *********9999999999********************999999996665556667777888887443....3333333333322222......2333 PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgl 291
                 p   +l+++   +  + ++++ ++++ +l+ l+ply  ++ g+s    +g+ +all  +g++++  +grl+dr+gr+  l + +++++l+a+++
  EHU01237.1 197 P---MLRRRSSRL-GINGCIISGIVLGSLYGLMPLY-LSHQGMS-DANVGYWMALLVSAGIVGQWPIGRLADRFGRMMVLRVQVFVVILGAIAM 284
                 4...455555444.99999999999999********.*******.478888888888888888*************999999999999999987 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 9.2e-16
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 ++s++  + l+ ++pl+l+++ g+s + +g  ++l   + +v++ p+Grl+drfGr  vl + +++ +lg +++++ ++  +++ + ++ Gl++ +l+p
  EHU01237.1 212 IISGIVLGSLYGLMPLYLSHQ-GMSDANVGYWMALLVSAGIVGQWPIGRLADRFGRMMVLRVQVFVVILG-AIAML-TN-AAMAPALFVLGLAGFTLYP 306
                 678888899999***777665.************************************************.66665.44.46999************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                 ++++++ + +++ e   ++  l +++ +G++ gp   ++l++s++ r++f+++a+v+l+ +v+  ll  ++++
  EHU01237.1 307 VAMSWACETVAHHELVAMNQALLLSYTVGSLAGPSMTAMLMQSYSDRLLFVMIAAVALVYLVM--LLRKADHH 377
                 ************************************************************775..77666655 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9  38.4     2e-17     7e-14      15     359 ..      28     368 ..      18     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 2e-17
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafal.sagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaa 112
                 ++P  l+   l   q+g + +  y G L+G l+a     + g +R   + ++ + +l++l m ++e+f+a++l+Rf aG++ A+v v++ s  l   + 
  EHU01237.1  28 LVPLWLTHDALATWQVGVVSSSYYTGNLLGTLVAGWLIkRYGFNRS-YYLATGLFALSTLCMLALEGFWAWTLLRFTAGIGCALVWVVVESALLCSGTV 125
                 67888899999999********************443303333444.77777778899***************************************** PP

       MFS_4 113 arrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYglaGfGYiita 211
                  +r++++a+      lG +++ llv+ l ++ l +   W+ ++v+sa+l l+ + +  ++ + ea    +    +   +   +l +  g++  G ++  
  EHU01237.1 126 RNRGQLLAAYMIVYYLGTVAGQLLVSKLSTELL-SVIPWVTATVISAILPLIFTQVSANSDTVEATPGGRI--LPMLRRRSSRLGI-NGCIISGIVLGS 220
                 *********999999***999999988776665.5558**************9999998888888888877..4444444445554.477777888777 PP

       MFS_4 212 tF..lvaiardgaggalleallWllvGlaa.ivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflaitalvlqlarel 307
                  +  ++++  +++ +  ++  +W+ + ++a ivg +   r+a+r g   +l++++ +  +g+++ l  ++ +++++   +lGl+ +   ++++  a e 
  EHU01237.1 221 LYglMPLYLSHQGMSD-ANVGYWMALLVSAgIVGQWPIGRLADRFGRMMVLRVQVFVVILGAIAMLT-NAAMAPAL--FVLGLAGFTLYPVAMSWACET 315
                 7665778877755554.567789877775449*****************************999887.45546665..67788888889999******* PP

       MFS_4 308 appat.rrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaa 359
                 +++++  ++  ++ +s+ +g ++Gp ++++l++  ++  l +++aa+alv  +
  EHU01237.1 316 VAHHElVAMNQALLLSYTVGSLAGPSMTAMLMQSYSDRLLFVMIAAVALVYLV 368
                 ***994444456789**********************************9654 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4  12.0     2e-10   7.3e-07      44     181 ..      39     174 ..      12     187 .. 0.86
   2 ?    2.1   0.7     0.019        70     108     128 ..     210     230 ..     192     233 .. 0.89
   3 !    3.2  10.6    0.0092        33      47     190 ..     238     370 ..     230     374 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2e-10
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 ++ ++g++ s+++ G ++G l+ag+l++r+G   s+  a+ lf  +++++ a +    +++ ++ R+ +Gig+ l+ v+v   +    + + Rg+l   
  EHU01237.1  39 ATWQVGVVSSSYYTGNLLGTLVAGWLIKRYGFNRSYYLATGLFALSTLCMLALE---GFWAWTLLRFTAGIGCALVWVVVESALLCSGTVRNRGQLLAA 134
                 67899*************************************************...9*********************999999999**********9 PP

                 HHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglgl.nktsnadgwrillglqlvpa 181
                 y   + +G + ++ +  +l  +  +   w     ++++++
  EHU01237.1 135 YMIVYYLGTVAGQLLVSKLsTELLSVIPWVTATVISAILP 174
                 9999999999999988777322222345555555555555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.019
                 GHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 108 gRvlvGigvGlasvlvPmyis 128
                 g +++Gi +G  ++l+P+y+s
  EHU01237.1 210 GCIISGIVLGSLYGLMPLYLS 230
                 679****************97 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.0092
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                  +g  +++++  +i+G+  +g l+drfGR  +l + +++++ ga+ + +        +++ + +++G++  + + ++  ++ E    +   a+     l
  EHU01237.1 238 NVGYWMALLVSAGIVGQWPIGRLADRFGRMMVLRVQVFVVILGAIAMLTNA------AMAPALFVLGLAGFTLYPVAMSWACETVAHHELVAMNQALLL 330
                 5677778888889******************99999999999999888777......333344455554434455555555554444444577777778 PP

                 HHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 146 aitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllf 190
                 ++t+G l +  +++ l + +s+    r+l+ + ++ a  l++l+++
  EHU01237.1 331 SYTVGSLAGPSMTAMLmQSYSD----RLLFVMIAAVA--LVYLVML 370
                 9999999997777777577777....55555544444..4444444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9  14.4    0.0057        21     227     369 ..       8     149 ..       3     156 .. 0.91
   2 !   24.2   7.6   3.8e-09   1.4e-05     189     384 ..     166     357 ..     149     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0057
  MFS_1_like 227 viifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgi 325
                 vi++l  +l++ +s +++++ + l+L +    +  +G++      +++   ++a +l++++G+ +   +a  +++l  l + ++e +w   ++ +  gi
  EHU01237.1   8 VILLLCGLLLMTVSIAVLNTLVPLWLTHDALATWQVGVVSSSYYTGNLLGTLVAGWLIKRYGFNRSYYLATGLFALSTLCMLALEGFWAWTLLRFTAGI 106
                 7889999999****************99999999****************************************9998888899*************** PP

  MFS_1_like 326 sfgllwaaaveyvskiapksleatgqgllsglyfglGralGsli 369
                  ++l+w+++ +      + + ++++ + + ++y+ lG+  G+l+
  EHU01237.1 107 GCALVWVVVESALLCSGTVRNRGQLLAAYMIVYY-LGTVAGQLL 149
                 ********99988888888999999999888866.888888875 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 3.8e-09
  MFS_1_like 189 llvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaekllekl 287
                   vis +++li+++ +++s++  ++    +l +l++++  + +  ++i g++ g ++  + lYL++ g s   +G  +al v a i+  +   +l +++
  EHU01237.1 166 ATVISAILPLIFTQVSANSDTVEATPGGRILPMLRRRSSRLGINGCIISGIVLGSLYGLMPLYLSHQGMSDANVGYWMALLVSAGIVGQWPIGRLADRF 264
                 568999999*******99999999888999********************************************************************* PP

  MFS_1_like 288 GhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflFr 384
                 G + +l + ++++i  +  +a+++na ++  + vL  + f l+ +a+   ++ +a ++l a  q+ll   ++ +G+  G  +  +l + +s + lF 
  EHU01237.1 265 GRMMVLRVQVFVVI--LGAIAMLTNAAMAPALFVLGLAGFTLYPVAMSWACETVAHHELVAMNQALLL--SYTVGSLAGPSMTAMLMQSYSDRLLFV 357
                 *9888887766655..78999999999887776666666666666666679999************95..568999999888889999999999986 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7  11.6   4.3e-09   1.5e-05     224     337 ..       6     117 ..       3     126 .. 0.94
   2 !   10.1  10.7   5.9e-05      0.21     210     332 ..     188     308 ..     122     318 .. 0.70
   3 ?   -1.2   0.6      0.16   5.8e+02     301     329 ..     340     367 ..     326     374 .. 0.41

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.3e-09
       MFS_2 224 raflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllv 322
                 r+ ++ll++ ll +++++vln+l+ + lt+   +  ++ v++   ++++llg++++ +l kr+g  ++y+l++ l ++ ++++l+l  +  ++ ++l +
  EHU01237.1   6 RPVILLLCGLLLMTVSIAVLNTLVPLWLTHDALATWQVGVVSSSYYTGNLLGTLVAGWLIKRYGFNRSYYLATGLFALSTLCMLAL--EGFWAWTLLRF 102
                 899********************************************************************************999..88888889999 PP

       MFS_2 323 iagfgvgvaallpws 337
                  ag+g ++ +++++s
  EHU01237.1 103 TAGIGCALVWVVVES 117
                 999998888887765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 5.9e-05
       MFS_2 210 klslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvll 308
                   +  + +  ++r r  ++ + ++++    lg l+gl+ +yl +   +++++ +++++++ ++++g   + +la r+g+   +l  ++++++l+++++l
  EHU01237.1 188 EATPGGRILPMLRRRSSRLGINGCIISGIVLGSLYGLMPLYLSHQGMSDANVGYWMALLVSAGIVGQWPIGRLADRFGRMM-VLRVQVFVVILGAIAML 285
                 23334566677888999999999*********************999*******************************875.55556666666666666 PP

       MFS_2 309 lqpsnlllflvllviagfgvgvaa 332
                    + ++++l++l +agf+++  a
  EHU01237.1 286 T-NAAMAPALFVLGLAGFTLYPVA 308
                 6.6999999999999999877655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.16
       MFS_2 301 vllvlvlllqpsnlllflvllviagfgvg 329
                 + ++ +l+   ++  l++v+ +++ + + 
  EHU01237.1 340 PSMTAMLMQ-SYSDRLLFVMIAAVALVYL 367
                 333333333.3333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 2578.83
//
Query:       EHU01238.1  [L=246]
Description: pyruvate formate lyase activating enzyme 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-30  106.0   0.1    3.4e-30  105.6   0.1    1.2  1  Radical_SAM  Radical SAM superfamily
    6.7e-16   58.8   0.0    8.5e-16   58.5   0.0    1.2  1  Fer4_12      4Fe-4S single cluster domain
    0.00015   21.9   0.0    0.00029   20.9   0.0    1.6  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.1   5.8e-34   3.4e-30       1     159 [.      24     178 ..      24     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 5.8e-34
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT..SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG.HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg..vkevilgggepllypdfvellerlaklavpgiritvetngtlpd.eekle 95 
                  +++++gC +rC +C+++ t  ++ +g++++v+ +++ v ++++ ++  +++v+ +gge +l+++fv++++r+++   +gi++++ tng++ + + +++
   EHU01238.1  24 ITFFQGCLMRCLYCHNRDT-WDTHCGKEITVDALMADVLSYRHFMNasGGGVTASGGEAILQAEFVRDWFRACQA--EGIHTCLDTNGFVRRyDPVID 118
                  6899**************9.**********************555559***************************..8************88****** PP

                  HHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  96 rllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendee 159
                  +ll++  d v l+l+  +++ +++++  g ++ ++l+  ++l ++g + +++r v++pG++d++
   EHU01238.1 119 ELLDAT-DLVMLDLKQMNND-IHQIL-VGVSNHRTLDFARYLQKKGKR-TWIRFVVVPGYSDDD 178
                  ****99.*************.*****.******************988.*************98 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.4e-19   8.5e-16       1     112 [.      16     125 ..      16     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.4e-19
     Fer4_12   1 lnGeGvrlslfvsgCnlsCkgCfnketwsfksgkeft.kelleeii..edlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytl 96 
                 ++G+G+r++ f++gC ++C +C+n++tw+ + gke+t ++l++ ++  +++++ s  g+t +GGE +l  +ae + + ++ +++e++  +++ ++g+  
  EHU01238.1  16 VDGPGIRFITFFQGCLMRCLYCHNRDTWDTHCGKEITvDALMADVLsyRHFMNASGGGVTASGGEAIL--QAEFVRDWFRACQAEGI-HTCLDTNGFVR 111
                 69**********************************98888888862256779999************..*****************.69******976 PP

     Fer4_12  97 eelskkekeellkeid 112
                         +ell+  d
  EHU01238.1 112 RYDP--VIDELLDATD 125
                 5553..4567777766 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.9e-08   0.00029       5      73 ..      27      94 ..      23     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.9e-08
     Fer4_14  5 lsgCnlsCkgCdnketwkselgkpqtee.lleqilkdlkkseikiqglvltGGePLhyenkkellklvkr 73
                + gC + C  C n++tw+ + gk+ t + l+ ++l+  +  + +  g++ +GGe +   + + + +  + 
  EHU01238.1 27 FQGCLMRCLYCHNRDTWDTHCGKEITVDaLMADVLSYRHFMNASGGGVTASGGEAI--LQAEFVRDWFRA 94
                59******************998877651556666555555556679*******88..444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1884.96
//
Query:       EHU01239.1  [L=760]
Description: pyruvate formate-lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-202  674.6   0.1   2.3e-202  674.1   0.1    1.1  1  PFL-like     Pyruvate formate lyase-like
    8.9e-43  145.2   0.0    2.8e-42  143.6   0.0    1.9  2  Gly_radical  Glycine radical


Domain annotation for each model (and alignments):
>> PFL-like  Pyruvate formate lyase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  674.1   0.1  2.6e-206  2.3e-202       6     647 .]      25     614 ..      16     614 .. 0.98

  Alignments for each domain:
  == domain 1  score: 674.1 bits;  conditional E-value: 2.6e-206
                 HH...HHHCC.HT.TS.E.EE.........SHHHHHHHHHHHHCTTS.-HHHHHHHHHHHHHHHS----.-TT-SS---SSSSTTEEE--TTTTCHHHH CS
    PFL-like   6 er...lkknytlyeakps.le.........lerarllteseketege.pvdirrakalakilsnlplyI.rddElIvGsqtkkprkraifPegsirmle 89 
                 ++   ++knyt+ye+++s l+         +e + +  ++e++t++  ++d++ a++   i+s+ ++yI ++ E+IvG+qt++p+krai+P+g+i+m+e
  EHU01239.1  25 NVrdfIQKNYTPYEGDESfLAgateatttlWESVLEGIKIENRTHAPvDFDTDLAST---ITSHDAGYInKSLEKIVGLQTEAPLKRAIIPFGGIKMVE 120
                 445579************999*************************99*********...*************************************** PP

                 TT.TTTCCCSSSSTEBEECHHHHHHHHHHHHHTTTSHHHHHHHHCHHTTHHHHTSTSEE--CHGGSSCEEEE--HHHHHTCHHHHHHHHHHHHHHHHCC CS
    PFL-like  90 de.ldtlaereadgfeideeekkilreifpyWkgktvnegvfdayteetkaaresgiitvglpdasgrGhiipdyervlkyGldglieeikeklakldl 187
                  + + +       g e+d   kki++e     ++kt+n+gvfd+yt+++ ++r+sg++t glpda+grG+ii+dy+rv++yG+d+l++++ +++ +l+ 
  EHU01239.1 121 GScKVY-------GRELDASLKKIFTE-----YRKTHNQGVFDVYTPDILRCRKSGVLT-GLPDAYGRGRIIGDYRRVALYGIDYLMADKFAQFTSLQ- 205
                 **9999.......**************.....***************************.*************************************9. PP

                 TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHTTTS--SSHHHHHHHHHHHHHHHHHHSSCCEEE-BSHHHHT CS
    PFL-like 188 ddpeaiekaefykaviisleavieyaeryarlaeelaeqetdpkrkaeLleiaevcgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRldqyl 286
                    +++             ++v+  +e ++rl+ee+a+q   ++++++++ +a+ +g+++s pa+++ EA+Q++++++la+vk++ngaams+gR++++l
  EHU01239.1 206 ---NDL------------ENGVN--LEATIRLREEIADQ---HRALEQIKAMAAKYGHDISGPATNAAEAVQWTYYGYLAAVKSQNGAAMSFGRVSTFL 284
                 ...333............35664..599***********...********************************************************* PP

                 HHHHHHHHHTTSS-HHHHHHHHHHHHHHHTTB-----HHHHCCCTTT--.--EEEEESB-TTSSB---HHHHHHHHHHHHH.--SSSEEEEEE-TTS-H CS
    PFL-like 287 ypyyekDleeGrlteeeaqelidclwlklrevrklrseeyaelfagydp.fqnltvGGqnedGrdavnelsyliLealenl.klpePnlsvrvskklpe 383
                 ++y+e+Dl++G+l+ee+aqelid+l++klr+vr+lr++ey+elf+g dp +++++++G++ dGr++v+++++++L++l+ + ++pePn+++++s+klp 
  EHU01239.1 285 DIYIERDLQAGKLNEEQAQELIDHLVMKLRMVRFLRTPEYDELFSG-DPiWATESLAGMGVDGRTLVSKTTFRFLNTLYTMgPSPEPNMTILWSEKLPV 382
                 **********************************************.888************************************************* PP

                 HHHHHHHHHHHTTS--CEEEEHHHHHHHHHHTT--HHHHHTEEEETTTEEEECCCEES-SSEEEECHHHHHHHHTTTCETTTTCB-S-----GG.G--S CS
    PFL-like 384 eflkkaaevsrkGlgspayenddviipallnrgvsledArdyaiaGCvepqipGkeeqffaarinlakaLelalnnGrdektgkqvgpktgdvt.efks 481
                 +f+k+aa+vs++ ++s++yendd+++p        ++d  dyaia+Cv+p+i+Gk++qff+ar+nlak+L++a+n+G+dek ++qvgpk  ++  e+++
  EHU01239.1 383 NFKKYAAKVSID-TSSLQYENDDLMRP------DFNND--DYAIACCVSPMIVGKQMQFFGARANLAKTLLYAINGGMDEKLKMQVGPKEAKIMdEVLD 472
                 ************.**************......88899..*****************************************************99**** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHTSTTHHHHT--GGGT-SSEECEEEEEE-HHHHHHHHHHHHHHHTTSTSS-HHHHHHHH CS
    PFL-like 482 yeelmeafkkqleylvklyvealniihymhdkyapepllsalvddciergkdlgegGarynfsgpqgvGlanvaDSLsAIkklVFddkkvtleeLkeal 580
                 ++ +m++ +  +++l+k+yv alniih mhdky++e+ l+al+d+++ r++++g+            +Gl+++aDSLsAIk+    +k++++++ +++l
  EHU01239.1 473 FDVVMARLDHFMDWLAKQYVTALNIIHFMHDKYSYEASLMALHDRDVYRTMACGI------------AGLSVAADSLSAIKY----AKVKPVRD-EDGL 554
                 *******************************************************............***************....********.**** PP

                 HTTTTT-HHHHHHHHHS--TTSS-HHHHHHHHHHHHHHHHHHCTSB-TTSCEEEEEE--TTTHHHHH CS
    PFL-like 581 aanFegeeelrqlllnaPkYGndddevDeiakevvetfaeevkkyknyrggkftaslltissnvpyg 647
                 a +F++e       +++P++Gn+d +vD++a ++ve+f+++++k ++yr++ +t+s+lti+snv+yg
  EHU01239.1 555 AIDFDIE-------GDYPQFGNNDPRVDDLACDLVERFMKKIQKLETYRNAVPTQSVLTITSNVVYG 614
                 *******.......****************************************************8 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   1.2e+04      52      75 ..       3      26 ..       2      28 .. 0.86
   2 !  143.6   0.0   3.1e-46   2.8e-42       1     106 []     630     741 ..     630     741 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                 -CCCCCCHHCCCCCCT-SECEEEE CS
  Gly_radical 52 erienlatlldgyfeggfhlnvnv 75
                 er ++la+  +g+ eg ++  vnv
   EHU01239.1  3 ERNAKLASAWQGFTEGEWQNSVNV 26
                 677899999999999999999998 PP

  == domain 2  score: 143.6 bits;  conditional E-value: 3.1e-46
                  TTSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCCCCCHHCCCCCC......T-SECEEEEETCCCHCCCCCSCGGGC CS
  Gly_radical   1 lapganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerienlatlldgyfe......ggfhlnvnvvsretLldAqehpekyp 92 
                  + pganpm+grd++g++asl+Svakl++++a+dgis+++++vp+algk+++ r +nla l+dgyf+      gg+hlnvnv++re+L+dA+++pekyp
   EHU01239.1 630 FGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDNVRKTNLAGLMDGYFHheasieGGQHLNVNVMNREMLMDAMDNPEKYP 727
                  679**************************************************************6689***************************** PP

                  CEEEESSSSEEECC CS
  Gly_radical  93 qltiRVsGYavnFv 106
                  qltiRVsGYav+F+
   EHU01239.1 728 QLTIRVSGYAVRFN 741
                  *************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5115.57
//
Query:       EHU01240.1  [L=286]
Description: formate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-74  250.6  26.7    1.4e-74  250.4  26.7    1.0  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.4  26.7   7.8e-79   1.4e-74       2     236 .]      15     276 ..      14     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 250.4 bits;  conditional E-value: 7.8e-79
                     HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCTTCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSSSCH CS
  Form_Nir_trans   2 ivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaesnpglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkvslk 96 
                     +++ + +agv+ka+++  ++ +l+++AG+fi+++++++++++++    + glakl+gg++F++Glilvv++ga+LfT+ +l +++a ++++++++
      EHU01240.1  15 MAKVAEDAGVYKATKHPLTTTFLAFTAGMFISIAFVFYITATTGSGPVPYGLAKLIGGICFSLGLILVVVCGADLFTSTVL-IVVAKASGRITWG 108
                     5677899*************************************8777*********************************.9************ PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG......HHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  97 kllknwlvvllgNliGsllvalllvvlsgll......aekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafv 185
                     +l++nw++v++gNl+G+l+++ l++++++++      + ++l++a++k++++f+ea++ G l+N++Vclavw++++ +++++k l+++lp+++fv
      EHU01240.1 109 QLARNWITVYIGNLAGALFFVTLMWFSGEQMvangawGLNVLQTADHKMHHTFIEAVCLGTLANLMVCLAVWMSYSGRTLTDKSLIMILPVAMFV 203
                     ********************98888888885566667********************************************************** PP

                     HCT---HHHHHHHHHHHHHH......................SHHHHHHHCHHHHHHHHHHHHHCCHHHHHHH CS
  Form_Nir_trans 186 asgfeHsvanmfliplglll......................tvadfilknlipvtlGNivGGallvgllyly 236
                     a+gfeHs+anmflip+++++                      tv +fi+ nlipvtlGNi+GG+llvgl+y++
      EHU01240.1 204 ACGFEHSIANMFLIPFAIVIrdfsgpefwqaagataaqfpalTVKNFIFDNLIPVTLGNIIGGGLLVGLTYWV 276
                     ******************66666667666777777778888899***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2232.01
//
Query:       EHU01241.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01241.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01241.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01241.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01241.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 810.01
//
Query:       EHU01242.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01242.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 984.90
//
Query:       EHU01243.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-97  325.6   3.9    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.037   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.041   13.4   2.5      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.27   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.77    8.9   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.5    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.5    7.1   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU01243.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01243.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01243.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01243.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01243.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01243.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU01243.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01243.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU01243.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU01243.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01243.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU01243.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01243.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01243.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU01243.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01243.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU01243.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01243.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01243.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU01243.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU01243.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU01243.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU01243.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01243.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01243.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU01243.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01243.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01243.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU01243.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU01243.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU01243.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU01243.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01243.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01243.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1049  (0.0585086); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.23s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 3893.38
//
Query:       EHU01244.1  [L=587]
Description: YcaO family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-82  274.8   0.0    2.5e-81  273.5   0.0    1.6  2  YcaO      YcaO cyclodehydratase, ATP-ad Mg2+-binding
    2.2e-66  223.0   0.0      3e-66  222.6   0.0    1.2  1  YcaO_C    YcaO cyclodehydratase C-terminal domain
  ------ inclusion threshold ------
      0.083   13.3   0.0       0.55   10.7   0.0    2.4  2  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> YcaO  YcaO cyclodehydratase, ATP-ad Mg2+-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.5   0.0   4.2e-85   2.5e-81       1     323 []      59     391 ..      59     391 .. 0.92
   2 ?   -1.9   0.0      0.27   1.6e+03     146     172 ..     550     577 ..     538     584 .. 0.74

  Alignments for each domain:
  == domain 1  score: 273.5 bits;  conditional E-value: 4.2e-85
        YcaO   1 nGkGateeaArasalgEalErysaegffr................gdekrvr.asyrelegegaldpeelglyse..eekdaadfvlepfdpdrpidwv 80 
                 nGkGa+++aA+asalgE++Er+s+++ff+                ++ek++     + l +eg ld +   +y++  + ++++  +l++ +  r i+++
  EHU01244.1  59 NGKGASKKAALASALGEYFERLSTNYFFAdfwlgnsiaqgdfvhyPNEKWFAlPEDDSL-PEGILDARLRAFYDPenALSASDLIDLQSGNSARGICAL 156
                 8***************************************************9999999.*************9999777888889************* PP

        YcaO  81 pgwsltdgeevlvPanlvylyeppegearlfletsnGlAaGntleeAilhGllEliERdafalawyerlplprid...lasdpeirellerlreagiev 176
                 p+++++d++ v++P+n++ +           l++snG++aGnt +eA+++Gl+E++ER+ +++++ e ++lp+i+   +a++p++ e+++rl+++g+ +
  EHU01244.1 157 PFTRQSDQQIVYIPMNIIGN-----------LYVSNGMSAGNTANEARVQGLSEVFERYIKNRIIAESISLPAIPesvMARYPDVVEAIARLEAEGFPI 244
                 ********************...........********************************************998889****************** PP

        YcaO 177 rlldatldlgipvvaavlvdpk...lllvagaGahldpevAlerAltElaqsrltlisgaredpdfd.eeladvatleradreallwlpeaaakrldfl 271
                  ++da+l++++pv+++vl++p    +  +a++Gah+d+ vAler++tEl+q+r   +     +p+fd ee+a++a+l     e++++ +++   ++d +
  EHU01244.1 245 FAYDASLGGKYPVICVVLFNPAngtC--FASFGAHPDFGVALERTVTELLQGRSLKDLDVFTPPTFDdEEVAEHANL-----ETHFI-DSSGLISWDLF 335
                 ********************664323..36***********************666666669999975555555555.....57776.55555577765 PP

        YcaO 272 l......faewassgdleedletllerlkaagldvlvvdltrpdlglpvvkvivPgle 323
                        f++w+++g++e+++ tl++++ka+g+dv+++d++  +lg++++++ivPg++
  EHU01244.1 336 KetadypFVDWKFDGTTEQEFSTLMAIFKAEGQDVYIADYE--HLGVYACRIIVPGMS 391
                 566777789********************************..9************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.27
        YcaO 146 yerlplpridlasdpeirellerlre.a 172
                 +++l++ + dl+++p+ ++ll+++++ +
  EHU01244.1 550 FNGLQPVDSDLKAFPAHQALLAAYEKlQ 577
                 45566666679999*******9999844 PP

>> YcaO_C  YcaO cyclodehydratase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.6   0.0     5e-70     3e-66       2     171 ..     408     581 ..     407     582 .. 0.99

  Alignments for each domain:
  == domain 1  score: 222.6 bits;  conditional E-value: 5e-70
      YcaO_C   2 lefRedllnLh..eldeeqleellerLeeeelddytrvaeLiGiefdentvWgqLrigELklliaLalgdleeAlelvewtlqfnds..taeralfYra 96 
                 +  Re+ll+L+  +++ e++ +l+++L+ee++dd+trv+eL+G++++++++W++LrigELk+++aLa+gdl++Al ++ewt++fn s  ++era++Yr+
  EHU01244.1 408 AGIRETLLALPgsNWNPEEYLDLISQLDEEGFDDFTRVRELLGLATGKDNGWYTLRIGELKAMLALAGGDLDQALIWTEWTMEFNGSvfSPERANYYRC 506
                 668************************************************************************************************ PP

      YcaO_C  97 LkavLelaldeeleledyeenfermyGeetveavlasvegevrfygLtatdekLegldaHqkllesYkkLqaaka 171
                 L+++L la+++e+++ +y+++f rmyG+++v+a++a+++ge+ f+gL++ d++L++++aHq+ll++Y+kLq+ak+
  EHU01244.1 507 LQTLLLLAMEDERNPLEYHAAFVRMYGADAVDAASAAISGEAAFNGLQPVDSDLKAFPAHQALLAAYEKLQKAKR 581
                 *************************************************************************97 PP

>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   6.8e+03      21      42 ..     233     253 ..     231     258 .. 0.70
   2 ?   10.7   0.0   9.2e-05      0.55      14      50 ..     423     466 ..     417     469 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHCCHHT--...EEECCSSS CS
        SPOR  21 laakLrakgfaaavavvsgggg 42 
                 ++a+L a+gf+++ a+  + gg
  EHU01244.1 233 AIARLEAEGFPIF-AYDASLGG 253
                 579999***9988.55554444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.2e-05
                 -HHHHHHHHHHCCHHT--..........EEECCSSSCEEEEESS CS
        SPOR  14 seanAerlaakLrakgfaaav.......avvsgggglyrVrvGp 50 
                 ++++   l+++L  +gf+ ++        ++ +++g+y++r+G 
  EHU01244.1 423 NPEEYLDLISQLDEEGFDDFTrvrellgLATGKDNGWYTLRIGE 466
                 6788889***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4367.55
//
Query:       EHU01245.1  [L=361]
Description: 3-phosphoserine/phosphohydroxythreonine aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-63  215.4   0.0    1.3e-63  215.3   0.0    1.0  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.0     7e-68   1.3e-63       1     371 []       4     349 ..       4     349 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 7e-68
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSS..SSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhr..svhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvte 95 
                  iy++s++++++p eVl+++++++t++++ +++  +++h++ke+++  eea++++++l++++s+++++f++G+++ ++++v+ +l   l   +++++ +
   EHU01245.1   4 IYNFSSGPAMLPSEVLRRAEQELTNWHGLGTSvmEISHRSKEFIQVAEEAEADFRDLLKIPSNYKVLFCHGGARaQFAAVPGNL---LGSATSADYAD 98 
                  8*******************************99****************************************9*********...*********** PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGH.HHH--TTEEEEEEESBETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHT CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkvipldeegeldldel.ekllnektklvaithvsnvtGt.iqpveeigklakkkgalvlvDaaqavghipidvkklg 191
                   +++a   +++e++k +  +   ++ ++eg+  + ++ e+ +++++++++++ ++++ G  i++ +++g      + +v++D +++++++pid+k++g
   EHU01245.1  99 GGYWAHS-AIKEAEKYCSPRTLDVKTTQEGKRAILPMrEWDVSDTAAYLHFCPNETIDGLaIDEEPDFG------DKVVVADLSSTILSRPIDIKRYG 189
                  *******.************999*999***999888779*********************9********......899******************** PP

                  ESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHH CS
  Aminotran_5 192 vDflafsghKllgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyl.eeigleaiekhekelaeyl 287
                  v  ++++++K++gP+G+++++vr++ll+++          + +s+ ++t++ae++s+f+  Tp++++++  g+++++l +++g++++ek ++++a  l
   EHU01245.1 190 V--IYAGAQKNIGPAGLTLVIVRDDLLGNA--------HQSVPSIlDYTVLAENDSMFN--TPPTFAWYLSGLVFKWLkQKGGVAEMEKINQAKAGLL 275
                  *..***************************........56788888*************..************************************* PP

                  HHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEE..E-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 288 lerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrs..GhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  +  +++++ +r+   d+a +++s ++++f+  +a+    +L+e+ +  +++  Gh+++          g++RaS+y+++  e v++l
   EHU01245.1 276 YGLIDNSDFYRN---DVALQNRSRMNIPFQLADASLDSLFLEESfKAGLHAlkGHRVV----------GGMRASIYNAMPLEGVKAL 349
                  ************...99****************************99999999*****..........****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2914.80
//
Query:       EHU01246.1  [L=428]
Description: 3-phosphoshikimate 1-carboxyvinyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.1e-155  515.4   0.0     1e-154  515.3   0.0    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.3   0.0  5.7e-159    1e-154       2     417 .]       8     421 ..       7     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: 515.3 bits;  conditional E-value: 5.7e-159
                    ECSS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHH CS
  EPSP_synthase   2 ekgkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrl 97 
                    ++++r++g+v++pGsks+snralllAaLa+g++++tnlLds+Dv++ml+al +Lg+e +  +++ +v+ v g+gg + a++ + l+lgn+gta+r+
     EHU01246.1   8 QPIARVNGTVNLPGSKSVSNRALLLAALAKGKTRLTNLLDSDDVKHMLNALDALGVEFTL-SSDRTVCEVTGKGGPLHASQPTELFLGNAGTAMRP 102
                    7899***************************************************88855.588****************99************** PP

                    HHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET.SS-BEEEEETSSTTHHHHHHHHHHHTTSBS..EEEEES.-T CS
  EPSP_synthase  98 LtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg.lklkgveikaevsSqqvtsllllaallaeg..ttelee.la 189
                    L+a+l+l    v+LtG++++++RPi +l+daLrq Ga+i+++e++ ++p++ +g +++++v ++++vsSq++t+ll++a+ lae+  ++ +++ l+
     EHU01246.1 103 LAAALCLGVQDVILTGEPRMKERPIGHLVDALRQGGATIDYLENTDYPPVRLRGgFTGGDVTVDGSVSSQFLTALLMMAP-LAENptRISIKGeLV 197
                    *******98***********************************************************************.888878999999*** PP

                    THHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SS..B--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEE CS
  EPSP_synthase 190 sepsiddtlkmlkkfgikietsgteesitvkGkek..lpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitq 283
                    s+p+id+tl++++ fg+++e+++ ++ + +kGk++  +pg ey vegDassA+yfl+aAai+gg+v+v+++g+ns+qGdi+++d +lekmga i++
     EHU01246.1 198 SKPYIDITLHLMRCFGVEVENQQYQH-FLIKGKQHyqSPG-EYLVEGDASSASYFLAAAAIKGGTVRVTGIGRNSVQGDIRFAD-VLEKMGASIEW 290
                    *********************66555.*********7777.*******************************************.*********** PP

                    ESTSEEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TT CS
  EPSP_synthase 284 eedasivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesyd 379
                    ++d +    +  l+ +d+d++++pd+a+t+a++a+faegtt +++i+++rvketdrl+amateLrk+Ga+vee++d+++i+p+e  lk+a + +y+
     EHU01246.1 291 GDDYIACTAR-TLRAIDMDMNHIPDAAMTIATAALFAEGTTQLRNIYNWRVKETDRLTAMATELRKVGAKVEEGHDFIRITPPET-LKHADIGTYN 384
                    **66666666.8***********************************************************************98.********** PP

                    STTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 380 DhRiamalalaglvaegeveiddiectdksfpefeekL 417
                    DhR+am+++l++ +++ +v+i d+ ct+k+fp+++e+L
     EHU01246.1 385 DHRMAMCFSLVA-LSDTPVTILDPGCTAKTFPDYFEQL 421
                    ************.6777******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3223.16
//
Query:       EHU01247.1  [L=226]
Description: cytidylate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-84  280.3   0.1    1.1e-83  280.1   0.1    1.0  1  Cytidylate_kin   Cytidylate kinase
    8.7e-09   35.7   0.1    1.6e-08   34.9   0.1    1.4  1  Cytidylate_kin2  Cytidylate kinase-like family
    1.5e-05   25.5   0.4     0.0026   18.2   0.1    2.5  1  AAA_17           AAA domain
    2.3e-05   24.9   0.1    0.00037   21.0   0.1    2.5  1  AAA_18           AAA domain
     0.0005   20.6   0.0     0.0011   19.5   0.0    1.7  1  ABC_tran         ABC transporter
     0.0016   18.6   0.2     0.0074   16.5   0.2    2.2  1  AAA_33           AAA domain
     0.0061   16.8   0.0      0.012   15.9   0.0    1.8  1  AAA_22           AAA domain
     0.0072   16.5   0.1       0.29   11.2   0.0    2.4  2  SKI              Shikimate kinase
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.026   14.6   0.0    1.6  1  ADK              Adenylate kinase
      0.022   14.6   0.0       0.11   12.4   0.0    2.0  2  dNK              Deoxynucleoside kinase
      0.024   14.4   0.0       0.04   13.6   0.0    1.5  1  AAA_30           AAA domain
      0.029   14.4   0.0      0.054   13.5   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.031   13.6   0.0       0.14   11.4   0.0    1.9  2  ATP_bind_2       P-loop ATPase protein family
       0.14   11.9   0.0       0.36   10.5   0.0    1.7  3  PRK              Phosphoribulokinase / Uridine kinase family
       0.14   12.0   0.2          2    8.3   0.0    2.5  3  APS_kinase       Adenylylsulphate kinase
       0.15   12.5   0.0       0.38   11.2   0.0    1.8  1  AAA              ATPase family associated with various cellul
       0.18   12.2   0.0       0.29   11.5   0.0    1.3  1  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.1   0.1   1.1e-86   1.1e-83       1     210 [.       8     221 ..       8     222 .. 0.99

  Alignments for each domain:
  == domain 1  score: 280.1 bits;  conditional E-value: 1.1e-86
                     EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HHHHHHHHHT--EEEEEE....EEEETTEE-TTGGGSHHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldeaalvelakevelsfeae....kvllngedveeelrsdevekavSa 91 
                     i+iDGP+g+GK+++++a+ae l++++ld+ga+YR+lalaal+++vd+ +e+alv +a++++++f ++    +v+l+gedv++e+r++ev++++S 
      EHU01247.1   8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHQVDIESEEALVPIAAHLDVRFLSHhgemQVILEGEDVTSEIRTQEVSNTASR 102
                     89*************************************************************99888999************************ PP

                     HTTSHHHHHHHHHHHHTT-BSSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-S---T CS
  Cytidylate_kin  92 vaaipavRailvkklrelvkkarvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgtsvsleellaeikeRDklDkerevgpLklae 186
                     vaa+p+vR++l++++r++ ++ +++++GRD+gtvvfpda++KifldAs+eeRa+RR+ ql+++g++v++++llaeikeRD++D++r+++pL++a+
      EHU01247.1 103 VAAFPRVREALLRRQRAFREEPGLIADGRDMGTVVFPDAPVKIFLDASPEERAQRRMLQLQENGFNVNFDRLLAEIKERDDRDRNRAIAPLVPAA 197
                     *********************************************************************************************** PP

                     T-EEEETTTS-HHHHHHHHHHHHH CS
  Cytidylate_kin 187 daliidtskltieevvekilelik 210
                     dal++d+++++ie+v++++l++++
      EHU01247.1 198 DALVLDSTQMSIEQVIDNALNYAR 221
                     ********************9986 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   1.5e-11   1.6e-08       1     154 [.       7     186 ..       7     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.5e-11
  Cytidylate_kin2   1 iITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeeveevde.rsrlssflskllaarvagdtl.................... 73 
                      +ITI++  G+g+ t+++a Ae L+++++d   i +v   + l+ +   e +e   +  +++  +   +  g+++                    
       EHU01247.1   7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHQVDIESEEaL-VPIAAHLDVRFLSHHGEMQvilegedvtseirtqevsnt 99 
                      8************************************99999999998888843.333333333333333444456899999877777554432 PP

  Cytidylate_kin2  74 ..deklddelfeaqervirel............a..aeesvVivGR.gadliLkdrpnvlrvfltapledrvkrvaeregl.....seeearek 145
                        +         a                    a  +e + +  GR  + +++ d p  +++fl+a+ e+r++r + + +      + + +  +
       EHU01247.1 100 asR--------VAA------FprvreallrrqrAfrEEPGLIADGRdMGTVVFPDAP--VKIFLDASPEERAQRRMLQLQEngfnvNFDRLLAE 177
                      221........111......12222223444443348999******559999***99..*************9954333222445477888899 PP

  Cytidylate_kin2 146 iketDkrra 154
                      ike+D+r +
       EHU01247.1 178 IKERDDRDR 186
                      998888766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.5e-06    0.0026       2      36 ..      12      46 ..      12     174 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.5e-06
                E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHT CS
      AAA_17  2 GgPGsGKgtqceklvekygfthlsaGdllreeakr 36
                G+ G+GKgt+c+ ++e ++ + l  G + r  a  
  EHU01247.1 12 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALA 46
                899*********************99998855422 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.5e-07   0.00037       1     112 [.       8     160 ..       8     193 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.5e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..................................gvnlrdvakenglllevdpealdeskrldedkldklldale 65 
                 I + G++G+GK tl+k+ ++ l+                                   +  +r++  ++++    + e  d + +++++ + +  + + 
  EHU01247.1   8 ITIDGPSGAGKGTLCKAMAEALQWhlldsgaiyrvlalaalhhqvdieseealvpiaaHLDVRFLSHHGEMQVILEGE--DVTSEIRTQEVSNTASRVA 104
                 7899*****************866789977777767777766666667633333333333333333333333333333..3333333333333333333 PP

      AAA_18  66 enss..........aleegknlvidghlaeleseaakdikkvvLtaspeelleRlek 112
                 + ++          a +e+  l+ dg+    +   +   k ++L+aspee+++R   
  EHU01247.1 105 AFPRvreallrrqrAFREEPGLIADGRDMGTVVFPDAPVK-IFLDASPEERAQRRML 160
                 3333555555555533333333556555554444444444.************9765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-06    0.0011      13      51 ..       7      89 ..       3     191 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1e-06
                EEEEEESTTSSHHHHHHHHTTSS--...SEEEE.........................................EETTCEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx.........................................xxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp...teGei.........................................lldgkdlke 51
                ++ i G++GaGK tL+k++a+ l++   ++G i                                          l+g+d+++
  EHU01247.1  7 VITIDGPSGAGKGTLCKAMAEALQWhllDSGAIyrvlalaalhhqvdieseealvpiaahldvrflshhgemqvILEGEDVTS 89
                57899********************9999999988777777777776666666666666666666666555555555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2     7e-06    0.0074       1     100 [.       7     144 ..       7     211 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt.......................................lrr.rlfgtdqqsktdytrvldrlyq.i 58 
                 ++ + G++G+GK tl + ++++l++ ll+s +                                       + +  l+g+d++s+ + ++v++ + +  
  EHU01247.1   7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAiyrvlalaalhhqvdieseealvpiaahldvrflshhgeM-QvILEGEDVTSEIRTQEVSNTASRvA 104
                 56677*************************996666655555555555555555555555555555544421.21222233333334444443333323 PP

      AAA_33  59 lnelarkalsagrnvildatnlsrrerarflklarrlgvpvr 100
                  + ++r+al +++ +    + l ++ r+    +++  ++pv+
  EHU01247.1 105 AFPRVREALLRRQRAFREEPGLIADGRDMGTVVFP--DAPVK 144
                 33444444444444444444444444444444444..44444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05     0.012       4      33 ..       4      32 ..       1     130 [. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeea 33
                ta ++++ G+sG+GK tl++ ++e l+ + 
  EHU01247.1  4 TAPVITIDGPSGAGKGTLCKAMAEALQ-WH 32
                67899*******************984.54 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00028      0.29       1      23 [.      14      36 ..      14      46 .. 0.93
   2 ?    3.0   0.0     0.097     1e+02      89     154 ..     145     217 ..     132     221 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                TTSSHHHHHHHHHHHHTSEEEEH CS
         SKI  1 mGaGKstvGkllAkklglefiDl 23
                +GaGK t+ k++A++l+++++D+
  EHU01247.1 14 SGAGKGTLCKAMAEALQWHLLDS 36
                59*******************97 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.097
                 EEEE--HHHHHHH..HHHTTS.......SGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHH CS
         SKI  89 iyLdvsleeller..lkadke.......RPllqekskeeelleelaereplyeeaadvvvdeseeskeevaeeil 154
                 i+Ld+s+ee ++r  l+ +++       R l++ k++  + ++  ++  pl   a++ v d+++ s e+v+++ l
  EHU01247.1 145 IFLDASPEERAQRrmLQLQENgfnvnfdRLLAEIKER--DDRDRNRAIAPLVPAADALVLDSTQMSIEQVIDNAL 217
                 7777777777766222333333333333433333333..222222234577777788888888888777777766 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.5e-05     0.026       3      32 ..      12      41 ..      10      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
                ESTTSSHHHHHHHHHHHHTSEEEEHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  3 GaPgaGKGtqaeklvkkyglahlstGdllR 32
                G+ gaGKGt ++ +++ +++  l +G + R
  EHU01247.1 12 GPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41
                999***********************9988 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001      0.11       1      27 [.       8      34 ..       8      41 .. 0.93
   2 ?   -0.6   0.0      0.93   9.8e+02     121     139 ..     139     157 ..     118     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
                EEEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvf 27
                i+++G+ gaGK tl k ++++l+++ +
  EHU01247.1  8 ITIDGPSGAGKGTLCKAMAEALQWHLL 34
                89********************99875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.93
                 CH-SEEEEEE--HHHHHHH CS
         dNK 121 akpdlliYLkasletcler 139
                 +   + i+L+as+e+  +r
  EHU01247.1 139 PDAPVKIFLDASPEERAQR 157
                 5566778888888876655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.8e-05      0.04      19      58 ..       6      51 ..       1     107 [. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaag......grviglAptgka 58
                 v ++ Gp G+GK t+ ka++ea++ +       +rv++lA  + +
  EHU01247.1  6 PVITIDGPSGAGKGTLCKAMAEALQWHLldsgaiYRVLALAALHHQ 51
                48899*****************999774467888888888876655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.1e-05     0.054      20      46 ..       6      32 ..       1      90 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
                EEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakalgve 46
                 vi+++G+ GaGK tl++++a+al+ +
  EHU01247.1  6 PVITIDGPSGAGKGTLCKAMAEALQWH 32
                4799*******************9876 PP

>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.14       3      70 ..       7      79 ..       5     130 .. 0.72
   2 ?    0.1   0.0      0.37   3.9e+02     122     148 ..     187     214 ..     141     222 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                EEEEEESTTSSHHHHHHHH.HHHTXEEEBSXXGGGHHHHH....HHHH...TTTXXEEEEESTTTSXSSHHHH CS
  ATP_bind_2  3 lvivsGlsGaGksvalral.edlGyyvvdnlPlsllpklv....dllkeansreskvavvldvrnreesaell 70
                ++ + G sGaGk++  +a+ e l ++  d   +  +  l+    ++  e+++  + +a  ldvr +++ +e+ 
  EHU01247.1  7 VITIDGPSGAGKGTLCKAMaEALQWHLLDSGAIYRVLALAalhhQVDIESEEALVPIAAHLDVRFLSHHGEMQ 79
                7889*************985789******8655444444300013344668888899999****888777664 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.37
                 HHHTHHHHHTXS.EEEECTTXXHHHHHH CS
  ATP_bind_2 122 relleplrarad.lildtselsvrelre 148
                 ++ ++pl   ad l+ld +++s++++ +
  EHU01247.1 187 NRAIAPLVPAADaLVLDSTQMSIEQVID 214
                 4567787777664899999999988766 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00035      0.36       1      32 [.       7      38 ..       7      69 .. 0.77
   2 ?   -4.0   0.0       9.5     1e+04      61      61 ..     162     162 ..     143     187 .. 0.51
   3 ?   -2.5   0.0       3.3   3.5e+03     120     147 ..     195     222 ..     179     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaae 32
                vI + g+SGaGk t+ +++ ++++ + + +  
  EHU01247.1  7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38
                89*******************99966666444 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9.5
         PRK  61 v 61 
                 +
  EHU01247.1 162 L 162
                 1 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
         PRK 120 alydervaelldlkiyvdisidlelark 147
                 ++ d  v +   ++i  +i++ l++ark
  EHU01247.1 195 PAADALVLDSTQMSIEQVIDNALNYARK 222
                 5566667777778888888888887776 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0019         2       4      27 ..       7      30 ..       4      50 .. 0.85
   2 ?    0.4   0.0      0.52   5.5e+02      19      63 ..      64     109 ..      61     117 .. 0.76
   3 ?   -1.2   0.0       1.6   1.7e+03     108     120 ..     148     160 ..     129     187 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
                EEEEESSTTSSHHHHHHHHHHHHH CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLv 27
                v+ + G sg+GK t+ +a++++L+
  EHU01247.1  7 VITIDGPSGAGKGTLCKAMAEALQ 30
                78899**********999998886 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.52
                 HHHHH.HHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHH CS
  APS_kinase  19 anale.kkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrv 63 
                 a +l+ + L ++g   ++L+G+ v  ++  +   +++ R   + rv
  EHU01247.1  64 AAHLDvRFLSHHGEMQVILEGEDVTSEIRTQEVSNTASRVAAFPRV 109
                 555552457888999999****999999888777778887777766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.6
                 E--HHHHHHHTTT CS
  APS_kinase 108 dtplevceerDpk 120
                 d++ e++++r   
  EHU01247.1 148 DASPEERAQRRML 160
                 4444444433322 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.38       4      27 ..      11      34 ..       8      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
                ESSTTSSHHHHHHHHHHHHTHEEE CS
         AAA  4 yGppGtGKTllakavakelgvefl 27
                 Gp G GK +l+ka+a+ l+ ++l
  EHU01247.1 11 DGPSGAGKGTLCKAMAEALQWHLL 34
                59****************987654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00028      0.29       1      26 [.       8      33 ..       8      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkkl 26
                  i + Gpsg GK tl+k +a+al+ +l
    EHU01247.1  8 ITIDGPSGAGKGTLCKAMAEALQWHL 33
                  5689*****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1583.31
//
Query:       EHU01248.1  [L=557]
Description: 30S ribosomal subunit protein S1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-101  332.0  32.1    4.4e-22   78.2   0.4    6.1  6  S1             S1 RNA binding domain
    1.3e-12   48.5  10.4      0.009   16.8   0.1    6.5  6  PCB_OB         Penicillin-binding protein OB-like domain
    6.9e-05   22.8   8.9        7.3    6.7   0.2    6.4  5  S1_2           S1 domain
     0.0023   17.8   4.1        3.1    7.8   0.0    4.5  4  CsrA           Global regulator protein family
  ------ inclusion threshold ------
      0.076   13.3   3.1         11    6.4   0.1    3.5  3  TOBE           TOBE domain
      0.089   12.7   0.3      0.089   12.7   0.3    4.7  6  DUF1344        Protein of unknown function (DUF1344)
        1.7    8.6   5.6         11    6.1   0.1    4.7  4  CusF_Ec        Copper binding periplasmic protein CusF


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.7   3.7e-10   9.4e-07       4      66 ..      20      78 ..      17      87 .. 0.91
   2 !   39.7   0.5   1.8e-13   4.5e-10       3      75 .]     103     171 ..     101     171 .. 0.96
   3 !   76.1   0.3   7.8e-25     2e-21       3      75 .]     190     260 ..     188     260 .. 0.97
   4 !   72.4   0.4   1.2e-23   2.9e-20       3      75 .]     275     347 ..     273     347 .. 0.97
   5 !   78.2   0.4   1.7e-25   4.4e-22       2      75 .]     361     434 ..     360     434 .. 0.98
   6 !   57.9   0.6   3.7e-19   9.4e-16       3      75 .]     449     520 ..     448     520 .. 0.98

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.7e-10
                TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETT CS
          S1  4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkd 66
                 g +v G+V+s++k+ + V+ g + e  +pa++ ++      ++ +++vGdev+v ++ v++ 
  EHU01248.1 20 PGSIVRGVVVSIDKDVVLVDAGLKSESAIPAEQFKNA----AGELEIQVGDEVDVALDAVEDG 78
                799********************************98....7****************99976 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 1.8e-13
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 e+ e v+G++   +kgG+ Vel  g+++f+p s+++ +   +++d+   +G+e+++kv+k+d +r+++++s++
  EHU01248.1 103 EEAETVTGIINGKVKGGFTVELN-GIRAFLPGSLVDVR---PVRDTLHLEGKELEFKVIKLDQKRNNVVVSRR 171
                 68899******************.************77...*****************************986 PP

  == domain 3  score: 76.1 bits;  conditional E-value: 7.8e-25
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++g +v+G+V+++t++GafV+lg gv+g++++ +++++ rv++p+e + vGde+ vkvlk+d++r r++l +k
  EHU01248.1 190 QEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWK-RVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 260
                 79*********************.**************.******************************9875 PP

  == domain 4  score: 72.4 bits;  conditional E-value: 1.2e-23
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  +g+ ++G Vt++t++G fVe+++gveg+v++se+++ +++ +p++v+ vGd v+v vl++d++rrri+l +k
  EHU01248.1 275 PEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
                 6899*****************************************************************9875 PP

  == domain 5  score: 78.2 bits;  conditional E-value: 1.7e-25
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++kg++veG+++s+t++G+f+ l++g++g+v++s++s++a++e+  +++k+Gde+ ++vl+vd +r+ri+l +k
  EHU01248.1 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEEAVREYKKGDEIAAVVLQVDAERERISLGVK 434
                 89*********************************************************************986 PP

  == domain 6  score: 57.9 bits;  conditional E-value: 3.7e-19
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +kg++v+G+Vt v+ +Ga Vel  gveg++ ase s+d r+ed + vl vGd v++k ++vd+++r ++ls++
  EHU01248.1 449 KKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASMD-RIEDATLVLNVGDDVEAKFTGVDRKNRLVSLSVR 520
                 79************************************.*******************************986 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0032       8.2      21      72 ..       9      61 ..       2      78 .. 0.77
   2 !   12.4   0.1   7.9e-05       0.2      19      99 ..     180     247 ..     168     268 .. 0.80
   3 !   16.8   0.1   3.5e-06     0.009      36      99 ..     281     334 ..     258     355 .. 0.84
   4 ?    2.9   0.0      0.07   1.8e+02      24      74 ..     356     406 ..     344     419 .. 0.79
   5 ?    2.6   0.1     0.088   2.3e+02      23      51 ..     404     431 ..     394     450 .. 0.73
   6 !    8.5   0.2    0.0013       3.3      29      68 ..     448     487 ..     434     507 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0032
                HHHHCCTSS.TCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTT CS
      PCB_OB 21 leealkklp.dsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvls 72
                +ee lk+++ + g+++ +vV+s++++ + v    +++  ip+e+ k a+  l+
  EHU01248.1  9 FEESLKEIEtRPGSIVRGVVVSIDKDVVLVDAGLKSESAIPAEQFKNAAGELE 61
                57778887735589*****************999***********99998554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.9e-05
                 HHHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB  19 ealeealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 ++  ++l +  ++g+ ++++V + ++ +a v l +g  g + + +++w r            k +s+++++Gd + v+  +
  EHU01248.1 180 AER-DQLLENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRV-----------KHPSEIVNVGDEINVKVLK 247
                 333.44455556788899***************.***************99...........89**********9998766 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 3.5e-06
                 EEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB  36 pAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 ++ V++ ++ +  v++++g +g + +++++w +k +           +s+v+++Gdvv v+  +
  EHU01248.1 281 TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI----------HPSKVVNVGDVVEVMVLD 334
                 57799999**************************54..........699*********998766 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.07
                 HCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS CS
      PCB_OB  24 alkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdk 74 
                 + +++++ g+ +++ + s+++ ++ +gl++g  g + l++++w ++  ++ 
  EHU01248.1 356 QFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEEAV 406
                 55677788999999999**************************98854433 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.088
                 HHCCTSSTCTTEEEEEEEEEETTEEEEEE CS
      PCB_OB  23 ealkklpdsgelrpAvVlsvseksarvgl 51 
                 ea+++++  g+  +AvVl+v++++ r+ l
  EHU01248.1 404 EAVREYK-KGDEIAAVVLQVDAERERISL 431
                 4455544.456679********9888877 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0013
                 STCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTG CS
      PCB_OB  29 pdsgelrpAvVlsvseksarvglrdgetgtipleglkwar 68 
                 ++ g ++++ V++v++k+a+v+l+dg +g + +++ ++ r
  EHU01248.1 448 NKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASMDR 487
                 5678899999*******************99998877655 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.026        67       2      46 ..      21      70 ..      20      72 .. 0.76
   2 !    5.2   0.1    0.0087        22       6      36 ..     196     226 ..     192     245 .. 0.72
   3 !    6.7   0.2    0.0029       7.3       2      35 ..     277     310 ..     277     342 .. 0.82
   4 !    5.5   0.0    0.0068        17       2      33 ..     364     395 ..     363     416 .. 0.84
   5 ?    1.3   0.0      0.14   3.7e+02       2      34 ..     451     483 ..     451     515 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.026
        S1_2  2 GkintlkvlretdfgyfLqkdesgevlLpkkevp.....eeleiGdeveV 46
                G i++  v+ +++  + ++++ + e   p ++ +      e+++Gdev+V
  EHU01248.1 21 GSIVRGVVVSIDKDVVLVDAGLKSESAIPAEQFKnaageLEIQVGDEVDV 70
                77888888888888888888888888888887764443357899****99 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0087
        S1_2   6 tlkvlretdfgyfLqkdesgevlLpkkevp.e 36 
                 +  v+  td g+f++ ++ ++ lL+  ++  +
  EHU01248.1 196 KGIVKNLTDYGAFVDLGG-VDGLLHITDMAwK 226
                 6679999***********.******9776443 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0029
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkevp 35 
                 G+  t +v+  td g f++ +e++e l++ +e++
  EHU01248.1 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMD 310
                 6667899**********************99986 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0068
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkke 33 
                 G  ++ k++ +tdfg+f+  d++ + l++ ++
  EHU01248.1 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSD 395
                 566789************98887877777665 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.14
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkev 34 
                 G i+t kv+  + +g+ ++  +++e  L  +e+
  EHU01248.1 451 GAIVTGKVTAVDAKGATVELADGVEGYLRASEA 483
                 789999999999999999977778877777765 PP

>> CsrA  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0012       3.1       8      32 ..     231     255 ..     229     260 .. 0.80
   2 !    5.4   0.1    0.0071        18      12      32 ..     322     342 ..     317     347 .. 0.85
   3 ?   -0.2   0.1      0.37   9.6e+02      15      32 ..     412     429 ..     410     434 .. 0.77
   4 ?    1.2   0.0      0.14   3.7e+02      12      36 ..     495     521 ..     489     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                 TT-EEEETTTEEEEEEEEETTEEEE CS
        CsrA   8 kgEsIvIgddIeitvlevegnqvrl 32 
                 + E + +gd+I ++vl+ + ++ r+
  EHU01248.1 231 PSEIVNVGDEINVKVLKFDRERTRV 255
                 568899************9888553 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0071
                 EEETTTEEEEEEEEETTEEEE CS
        CsrA  12 IvIgddIeitvlevegnqvrl 32 
                 + +gd +e+ vl++++++ r+
  EHU01248.1 322 VNVGDVVEVMVLDIDEERRRI 342
                 578************999777 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.37
                 TTTEEEEEEEEETTEEEE CS
        CsrA  15 gddIeitvlevegnqvrl 32 
                 gd+I  +vl+v++++ r+
  EHU01248.1 412 GDEIAAVVLQVDAERERI 429
                 799999999999887554 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.14
                 EEETTTEEEEEEEEETTE..EEEEEE- CS
        CsrA  12 IvIgddIeitvlevegnq..vrlgIeA 36 
                 + +gdd+e ++++v+ ++  v l + A
  EHU01248.1 495 LNVGDDVEAKFTGVDRKNrlVSLSVRA 521
                 4689**********9877678777776 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0042        11      39      60 ..      54      75 ..      20      76 .. 0.85
   2 ?   -3.5   0.0       5.2   1.3e+04       7      23 ..     280     294 ..     279     299 .. 0.72
   3 ?    5.4   0.3    0.0086        22       6      57 ..     453     505 ..     451     509 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0042
        TOBE 39 rrsaeeLgLapGeeVfalikaa 60
                +++a eL++++G+eV ++++a+
  EHU01248.1 54 KNAAGELEIQVGDEVDVALDAV 75
                58999***************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.2
        TOBE   7 lpgtVvvveplgseveV 23 
                 l+g+V+ +++ g  ++V
  EHU01248.1 280 LTGRVTNLTDYG--CFV 294
                 789999988777..444 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0086
        TOBE   6 qlpgtVvvveplgseveVrvdlggga.tLtArvtrrsaeeLgLapGeeVfali 57 
                 +++g+V++v ++g++ve+   ++g      A+++r   + L L +G+ V a +
  EHU01248.1 453 IVTGKVTAVDAKGATVELADGVEGYLrASEASMDRIEDATLVLNVGDDVEAKF 505
                 789**********9998887777766656778888888888888888887766 PP

>> DUF1344  Protein of unknown function (DUF1344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.9   1.2e+04       4      14 ..      24      34 ..      24      35 .. 0.83
   2 ?   -2.0   0.0       1.4   3.6e+03      37      50 ..      62      75 ..      60      78 .. 0.80
   3 ?   -2.4   0.0       1.9   4.8e+03      34      43 ..     186     195 ..     181     197 .. 0.86
   4 ?    1.3   0.1      0.12   3.2e+02       3      23 ..     366     386 ..     364     388 .. 0.83
   5 ?   -3.1   0.0       3.1     8e+03       3      20 ..     414     431 ..     413     431 .. 0.82
   6 ?   12.7   0.3   3.5e-05     0.089       4      54 ..     454     512 ..     451     518 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.9
     DUF1344  4 vegtIkkidkk 14
                v g++ +idk+
  EHU01248.1 24 VRGVVVSIDKD 34
                5799999*997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
     DUF1344 37 LkvGvkVvVfYtvv 50
                ++vG +V V+ + v
  EHU01248.1 62 IQVGDEVDVALDAV 75
                899******98865 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
     DUF1344  34 idgLkvGvkV 43 
                 +++L+ G++V
  EHU01248.1 186 LENLQEGMEV 195
                 799*****99 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.12
     DUF1344   3 dvegtIkkidkkalsitLdDG 23 
                  veg+Ik+i   +  i Ld G
  EHU01248.1 366 RVEGKIKSITDFGIFIGLDGG 386
                 69*******998888888866 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 3.1
     DUF1344   3 dvegtIkkidkkalsitL 20 
                 ++ +++ ++d++ + i+L
  EHU01248.1 414 EIAAVVLQVDAERERISL 431
                 567889999999999987 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 3.5e-05
     DUF1344   4 vegtIkkidkkalsitLdDG.ktYklpeefdidg.......LkvGvkVvVfYtvvdgkr 54 
                 v+g+++++d+k++++ L DG + Y    e+ +d        L+vG +V   +t vd k+
  EHU01248.1 454 VTGKVTAVDAKGATVELADGvEGYLRASEASMDRiedatlvLNVGDDVEAKFTGVDRKN 512
                 89******************556999999999972222222355666666666666555 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.31   7.9e+02      42      59 ..      61      78 ..      26      84 .. 0.75
   2 ?   -0.3   0.0      0.41   1.1e+03      34      50 ..     180     196 ..     176     204 .. 0.86
   3 ?   -1.2   0.0       0.8     2e+03      38      57 ..     404     423 ..     399     431 .. 0.71
   4 ?    6.1   0.1    0.0043        11       1      58 [.     456     510 ..     456     519 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.31
                S-STT-EEEEEEEEETTC CS
     CusF_Ec 42 glkaGdkVrFefekrdgg 59
                ++++Gd+V++ ++  ++g
  EHU01248.1 61 EIQVGDEVDVALDAVEDG 78
                688999999988888777 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.41
                 --TTSEESS-STT-EEE CS
     CusF_Ec  34 vadpallaglkaGdkVr 50 
                 +++++ll++l++G +V+
  EHU01248.1 180 AERDQLLENLQEGMEVK 196
                 56889********9996 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.8
                 SEESS-STT-EEEEEEEEET CS
     CusF_Ec  38 allaglkaGdkVrFefekrd 57 
                 + +++ k+Gd+++  + + d
  EHU01248.1 404 EAVREYKKGDEIAAVVLQVD 423
                 56778888888887776665 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0043
                 EEEEEEETTCTEEEEEE--BCCCTB-SEEEEEE--TTSEESS-STT-EEEEEEEEETT CS
     CusF_Ec   1 GvVkavdaaagkvtlsHgpipalgwpaMtMdFkvadpallaglkaGdkVrFefekrdg 58 
                 G+V+avda++ +v l+ g    l    + Md +++d+ l+  l +Gd V+ +f+  d 
  EHU01248.1 456 GKVTAVDAKGATVELADGVEGYLRASEASMD-RIEDATLV--LNVGDDVEAKFTGVDR 510
                 99*************9999888998888888.78888887..8888888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3927.24
//
Query:       EHU01249.1  [L=94]
Description: integration host factor (IHF), DNA-binding protein, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-29  101.8   0.0      2e-29  101.6   0.0    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    4.4e-08   33.2   0.0    5.1e-08   33.1   0.0    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    0.00083   19.2   0.0     0.0011   18.8   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
  ------ inclusion threshold ------
      0.034   14.3   0.0      0.051   13.7   0.0    1.2  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
      0.065   13.4   0.0      0.074   13.2   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
      0.067   14.1   0.0      0.088   13.7   0.0    1.3  1  MDMPI_C          MDMPI C-terminal domain
       0.17   11.9   0.0       0.31   11.1   0.0    1.5  1  HU-DNA_bdg       DNA-binding domain


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   7.7e-33     2e-29       1      90 []       1      91 [.       1      91 [. 0.97

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 7.7e-33
                     EEHHHHHHHHH.TT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeia.ektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     mtk+eLie++a ++t++  k ++++v+++l+ ++ +L++ge++e++gFG+f+++ r++rtgrnpkTg+kv  + ++v++Fkp+kel+++ n
       EHU01249.1  1 MTKSELIERLAgQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91
                     9**********66777************************************************************************986 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0     2e-11   5.1e-08      35     117 ..       4      89 ..       1      92 [. 0.88

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2e-11
      HU-HIG  35 eeLceeis.krstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkke 117
                 +eL+e+ + ++++++   v+ +++++ +++++ La+Ger+e+ ++G+Fsl  ++ ++  ++k+ ++ +++ k + +f+pgk+l+++
  EHU01249.1   4 SELIERLAgQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRApRTGRNPKTGDKVDLEGKYVpHFKPGKELRDR 89 
                 56666554278999999*************************************8777889999*********988******9987 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.2e-07    0.0011       9      50 ..      13      54 ..       5      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.2e-07
  HU-CCDC81_bac_2  9 eaegisyeeAlqkiekeveelkqeLeeegrveleniGeLsln 50
                     ++ +i+ + +  ++++  e++  +L +++r+e+ + G++sl 
       EHU01249.1 13 QHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLH 54
                     7899***********************************986 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-05     0.051      11      54 ..      12      53 ..       9      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
  HU-CCDC81_euk_2 11 aaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsi 54
                     ++ ++++ +vVe++v+e++      l++g+++e  ++g+G +s+
       EHU01249.1 12 GQHTHIPAKVVEDAVKEMLEHMATTLAQGERIE--IRGFGSFSL 53
                     68899*************************865..578888876 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.9e-05     0.074      18      65 ..      16      63 ..       5      93 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
  HU-CCDC81_euk_1 18 lltteqllliWdalgeyieeqlekgkgvhipnfGtFtfe....apdldlkad 65
                     +++++ +  + +++ e+ +  l +g  + i +fG+F++     +    ++ +
       EHU01249.1 16 HIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHyrapR----TGRN 63
                     5667788889999************************9955431....2222 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.4e-05     0.088       2      46 ..      21      63 ..      20      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
     MDMPI_C  2 laadgvdellatvvarraaapdsrvvlelegprtvhlhatdggra 46
                +  d+v e+l++++++ a +   r++++  g  ++h +a+ +gr 
  EHU01249.1 21 VVEDAVKEMLEHMATTLAQGE--RIEIRGFGSFSLHYRAPRTGRN 63
                678***************887..*****************99963 PP

>> HU-DNA_bdg  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.31      30      84 ..       2      57 ..       1      92 [. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                -HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTTT-EEE.-SSEEEEEEEES CS
  HU-DNA_bdg 30 tledIidemvkegtevrketienilnlykrevseaileGysVn.tglgrasltikG 84
                t +++i++++ + t + +  +e++++ + + ++  +++G+ ++  g+g+ sl  + 
  EHU01249.1  2 TKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEiRGFGSFSLHYRA 57
                6789************************************9973588888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 735.36
//
Query:       EHU01250.1  [L=458]
Description: metallo-beta-lactamase superfamily hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-53  181.5  36.5    1.9e-53  181.5  36.5    2.0  2  Competence  Competence protein
      4e-05   23.3   5.9      4e-05   23.3   5.9    5.0  4  DUF4131     Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Competence  Competence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.3      0.14   1.3e+03     195     243 ..      28      72 ..       4      90 .. 0.44
   2 !  181.5  36.5   2.1e-57   1.9e-53       1     238 [.     202     443 ..     202     458 .] 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.14
  Competence 195 sllvlplallallllllp....slaalllqladlllelllellellaslplas 243
                 +++ + ++l++++l++++            +a++ l l  + l  ++sl   +
  EHU01250.1  28 TFI-VVMLLCGTCLVAMSvryvR-------IAGCALLLAAWGLVNAQSLVNDT 72 
                 333.3333444444433334442.......33333333333333333322222 PP

  == domain 2  score: 181.5 bits;  conditional E-value: 2.1e-57
  Competence   1 LllGdrselseevweafqktGlaHllAiSGlHvglvagllllllrrlllrlplrkla....allallflllYallaGfspsvlRAllmlllvllalllk 95 
                 L++G r++lse++++ +++tG+aHl+AiSG+H+gl+ag ++ll+r   + lp+r +     +++  l+++lY++l+G++ +++RAll l+l+++ ++++
  EHU01250.1 202 LAFGIRDNLSEATRQLLRDTGTAHLMAISGMHIGLAAGTGWLLARGSQFLLPARCISylypLIVSWLCAALYTWLSGAQAPAQRALLALTLWAITRITG 300
                 789******************************************99666666666655568888999999**************************** PP

  Competence  96 rkaspldalalaallvllvdPlallsaGfqLSflavagilllaprlekalkrlskkvrelllla.vslaaqlallplllylfgqislvsllaNllavPl 193
                  ++s+++++ l++ l+l++dPl +ls +f+LS+lav ++l ++++++ a + + ++ + ll+l+ ++l ++++++pl++ lf++isl++l+aNl+a+P+
  EHU01250.1 301 IQLSSWQIWTLCVGLLLALDPLTVLSDSFWLSVLAVGMLLTWYRWFPLAERFRDRRRWFLLQLLhLQLGMMILMVPLQAALFNGISLTALFANLFAIPV 399
                 ***********************************************999999999888888878********************************** PP

  Competence 194 vsllvlplallallllllpslaalllqladlllelllellellas 238
                 vs++++pl+l+ lll ++p+l+ + +q+adl+l++l++ l+ll +
  EHU01250.1 400 VSFITVPLILITLLL-PFPALSVWGWQAADLSLRFLFSGLALLPA 443
                 ********8888776.578*******************9999887 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   5.9   4.5e-09     4e-05       7     158 ..      28     163 ..       2     169 .. 0.65
   2 ?   -4.2   7.6       1.3   1.2e+04       8      53 ..     262     307 ..     255     319 .. 0.72
   3 ?    2.4   6.3     0.012   1.1e+02       4      51 ..     328     375 ..     324     390 .. 0.58
   4 ?   -4.7   5.7       1.8   1.7e+04      27      51 ..     403     427 ..     379     451 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.5e-09
     DUF4131   7 lvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvaslpeltgsgtrfvlevervlsagktkpvs 105
                  +++++ll+ ++l ++       r v ++ ++lll+a++ + ++++ +       +++  ++ +++  + +++++++s+ r+ +       +++    +
  EHU01250.1  28 TFIVVMLLCGTCLVAMS-----VRYVRIAGCALLLAAWGLVNAQSLVND----TEWMS-TRPAWFVVQI-EEVKQDASRIRVRML----KAGNRIFFPP 111
                 33333333333333332.....233333333333333333333333333....35666.7888888888.555566677766655....7788888888 PP

     DUF4131 106 grvlvtvpkspaeglrpGdrlrltgrlkrprpatNpggFDyraYLarqgIfat 158
                     ++++++  + + pG+ ++ + rl+ +++  N g+FD +++  ++++  +
  EHU01250.1 112 RFAWLSLQDNATA-YCPGQSWQMRLRLRAVHARLNEGEFDAQRFSMANHTPVQ 163
                 8889999888888.*****************************9888776555 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.3
     DUF4131   8 vllalllllllllllllrrrprrrvllllllllllallgfalrapq 53 
                  l+++ l+++l+ +l   ++p +r ll+l+l +++   g++l+++q
  EHU01250.1 262 PLIVSWLCAALYTWLSGAQAPAQRALLALTLWAITRITGIQLSSWQ 307
                 4555555666666665555888888888888888888888887776 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.012
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalra 51 
                 +++l +la+++ll+ ++++ l +r r r+ ++ll ll l l+++ l +
  EHU01250.1 328 SFWLSVLAVGMLLTWYRWFPLAERFRDRRRWFLLQLLHLQLGMMILMV 375
                 567777777777777777766664444444444444444444444433 PP

  == domain 4  score: -4.7 bits;  conditional E-value: 1.8
     DUF4131  27 rprrrvllllllllllallgfalra 51 
                  + + +l++lll + +++++ ++ a
  EHU01250.1 403 ITVPLILITLLLPFPALSVWGWQAA 427
                 3334444444444444444433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3252.76
//
Query:       EHU01251.1  [L=138]
Description: metallo-beta-lactamase superfamily hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-11   44.4   0.2    2.1e-11   44.2   0.2    1.1  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00046   19.7   0.0    0.00059   19.4   0.0    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.2   2.4e-15   2.1e-11       3      72 ..      31     102 ..      29     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 2.4e-15
                  CCSSEEEEEEETTCEEEES--SCHHHHHHHH..HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEE CS
  Lactamase_B   3 pdpvnsyliegdggviLiDtGtsteaaraal..elaalglkpkdvdavilTHlHlDHiGglgglveatdvpv 72 
                  ++ + s++i  +++++L+DtG  + +++a +  +l  l++k++++  vil+H HlDH+Ggl  + ++ + ++
   EHU01251.1  31 VGHGLSVVISQGDEAVLYDTGPRWKYSDAGSrvILPWLERKGLRLLEVILSHRHLDHTGGLSAILQHVPTVW 102
                  677889********************************************************9999887766 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.6e-08   0.00059       3      62 ..      46     103 ..      44     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.6e-08
                    EEES--TTHHHH..HTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEE CS
  Lactamase_B_2   3 iLiDagpdlrqq..alralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplya 62 
                    +L D+gp +      +r   P   r+ l+ ++ V+l+h H DH+ gl  + +  p   +++ 
     EHU01251.1  46 VLYDTGPRWKYSdaGSRVILPWLERKGLRLLE-VILSHRHLDHTGGLSAILQHVP---TVWM 103
                    67788888655553455557877899999999.**************99998655...3555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1050.95
//
Query:       EHU01252.1  [L=123]
Description: metallo-beta-lactamase superfamily hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1069.41
//
Query:       EHU01253.1  [L=582]
Description: membrane component of an ABC superfamily lipid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-59  202.2  15.3    1.6e-59  201.8  15.3    1.2  1  ABC_membrane     ABC transporter transmembrane region
    1.3e-35  122.9   0.2    4.7e-35  121.1   0.1    2.0  2  ABC_tran         ABC transporter
    3.7e-10   39.6   3.9    3.5e-09   36.4   3.9    2.5  1  SMC_N            RecF/RecN/SMC N terminal domain
    1.4e-06   28.2   0.6    4.1e-06   26.7   0.1    1.9  2  DEAD             DEAD/DEAH box helicase
    0.00064   19.1   1.1     0.0017   17.6   0.0    2.1  3  Zeta_toxin       Zeta toxin
    0.00068   20.0   0.2     0.0015   18.9   0.2    1.5  1  AAA_16           AAA ATPase domain
     0.0011   18.9   0.0     0.0055   16.6   0.0    2.1  2  RsgA_GTPase      RsgA GTPase
     0.0011   18.6   0.3     0.0028   17.3   0.3    1.8  1  AAA_25           AAA domain
     0.0013   19.0   0.4      0.011   16.0   0.4    2.3  1  AAA_22           AAA domain
     0.0014   18.4   0.0      0.003   17.3   0.0    1.5  1  Cytidylate_kin   Cytidylate kinase
     0.0021   18.0   0.2     0.0053   16.7   0.0    1.8  1  APS_kinase       Adenylylsulphate kinase
     0.0022   18.1   1.3     0.0076   16.4   0.2    2.3  2  DUF87            Helicase HerA, central domain
     0.0028   17.0   0.1     0.0044   16.3   0.1    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0069   16.1   0.3      0.026   14.3   0.3    2.0  1  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.7          2    8.1   0.1    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.019   14.7   0.2      0.056   13.2   0.1    1.9  1  AAA_30           AAA domain
      0.019   14.7   0.1      0.051   13.3   0.1    1.8  1  AAA_24           AAA domain
       0.02   15.5   0.1      0.069   13.7   0.1    2.1  1  AAA_18           AAA domain
      0.042   13.9   0.1      0.095   12.8   0.1    1.8  1  MMR_HSR1         50S ribosome-binding GTPase
      0.045   13.5   0.0      0.073   12.8   0.0    1.4  1  AAA_15           AAA ATPase domain
      0.046   14.1   0.5        1.9    8.9   0.5    2.6  1  AAA              ATPase family associated with various cellul
      0.057   13.1   0.1       0.98    9.1   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
      0.068   12.7   0.0       0.21   11.1   0.0    1.8  1  AAA_7            P-loop containing dynein motor region
      0.091   12.1   0.1       0.27   10.5   0.0    1.7  2  6PF2K            6-phosphofructo-2-kinase
       0.12   12.7   1.2        3.9    7.8   0.2    3.2  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.12   12.3   0.0       0.46   10.5   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8  15.3   2.3e-62   1.6e-59       1     273 [.      27     297 ..      27     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 2.3e-62
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   li++ +++i++ + + l+ ++l+ +ld+ ++k+d +   +  + l++++l+l+++++++++sy+++++++++++ +rr+lf +++ +p++ffd++s+
    EHU01253.1  27 LIVAAIALIINAAGDTLMLSLLKPLLDDGFGKADRSV--MLWMPLAVIGLMLVRGVSSYISSYCISWVSGNVVMNMRRRLFSHMMGMPVAFFDQQST 121
                   68899********************************..********************************************************** PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                   G+llsr+t d +++ ++ +  l+++++  ++++g++++mfy++w+l+l+l++++p++ + +  ++k++++++k +q++++++++ ae++l+g++ V 
    EHU01253.1 122 GTLLSRITYDSEQVASSSSGALVTVVREGASIIGLFVMMFYYSWQLSLILIVLAPIVSFAIRTVSKRFRNISKSMQNTMGQVTTSAEQMLKGHKEVL 218
                   ************************************************************************************************* PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   +fg+++++ e+f k +++++++g+k   a++++ +++ql+++l+ a++l+ +++ +  ++l+ g+++v+ s +  l+ +
    EHU01253.1 219 IFGGQDIESERFAKVSNRMRQQGMKLVSASSISDPVIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRP 297
                   *****************************************************************99999998888877 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.9   2.7e+03      29      52 ..     190     223 ..     186     271 .. 0.66
   2 !  121.1   0.1   6.8e-38   4.7e-35       1     137 []     359     509 ..     359     509 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.9
                 HHHTTSS--SEEEEEETTCEGGG..........B CS
                 xxxxxxxxxxxxxxxxxxxxxxx..........x RF
    ABC_tran  29 kllagllkpteGeilldgkdlke..........q 52 
                 + +++ +++t+G+++   +++ +          q
  EHU01253.1 190 RNISKSMQNTMGQVTTSAEQMLKghkevlifggQ 223
                 5678888888888877765555534444444441 PP

  == domain 2  score: 121.1 bits;  conditional E-value: 6.8e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeei 85 
                 lkn++l l +g++va+vG++G+GKSt+++ll++ ++ ++Geilldg+dl+e +l slr++++ ++q+ +lf+++ v++n              e+ + +
  EHU01253.1 359 LKNINLMLPAGKTVALVGRSGSGKSTIASLLTRFYDIQQGEILLDGHDLREYTLASLRNQVALVSQNVHLFNDT-VANNiayarseqysreeiEKAATM 456
                 79************************************************************************.99999**99998555444333335 PP

                 HHHHHHSTTGG.TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglke.lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++a++ +++ +   dtv+++++  LSgGq+qr+a+arall++ ++l+lDE+t+
  EHU01253.1 457 AHAMDFIKNMDkGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATS 509
                 5555444443357899***********************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   3.9     5e-12   3.5e-09      80     212 ..     186     552 ..     182     558 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5e-12
                 EEEEEETTEESSSSSSCEEEEEEEETTSEEEEEE....TTEEE-HHHHHHHHHCTT-STT....................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx....................................... RF
       SMC_N  80 eitfdnedkklkiekeevsisrrvkrkgeseyki....ngkevtkkevsellesagiske....................................... 135
                 +  f+n +k+++ +  +v++s + + kg+ e+ i    + ++ ++++vs+ ++++g++                                         
  EHU01253.1 186 SKRFRNISKSMQNTMGQVTTSAEQMLKGHKEVLIfggqDIESERFAKVSNRMRQQGMKLVsassisdpviqliaslalafvlyaasfpsvmdtltagti 284
                 556666666666666677777777777777777655544455555777777777777776777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EHU01253.1 285 tvvfssmialmrplksltnvnaqfqrgmaacqtlfsildseqendtgtreitrakgdvefrgvtftypgretpalkninlmlpagktvalvgrsgsgks 383
                 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................CS- CS
                 ................................................................................................xxx RF
       SMC_N 136 ................................................................................................lLS 138
                                                                                                                 lLS
  EHU01253.1 384 tiaslltrfydiqqgeilldghdlreytlaslrnqvalvsqnvhlfndtvanniayarseqysreeiekaatmahamdfiknmdkgldtvigengvLLS 482
                 7777777777777777777777777777777777777777788888888888888888888888888888888888888888888888888888889** PP

                 HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 139 gGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212
                 gG+++ +a+a        +  p+ +lDe  +aLD +  +++ + l+e +kn   +vi++r  ++ekad++v v 
  EHU01253.1 483 GGQRQRIAIAR----ALLRDCPILILDEATSALDTESERAIQSALDELQKNRTSLVIAHRLSTIEKADEIVVVE 552
                 ****9888764....45799*************************************************99886 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.9     2e+03      60      90 ..     200     228 ..     183     241 .. 0.73
   2 !   26.7   0.1     6e-09   4.1e-06       8     152 ..     362     529 ..     358     539 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHTTTSTSEEEEEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  60 aeqtlnnlkkfkkyidlrvlliiggvaardq 90 
                 + q+ + +++++k    +++li+gg++ +++
  EHU01253.1 200 MGQVTTSAEQMLKG--HKEVLIFGGQDIESE 228
                 55777777777775..578888888877655 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 6e-09
                 HHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEE..EEETTSS CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxx RF
        DEAD   8 iplil.gggdvlvaaeTGsGKTlaflipvlqivyet................kgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvl..liiggva 86 
                 i+l+l  g+ v + ++ GsGK++++++     +y+                   + ++++ +v+    L ++t+ n   +    +  r++     +   
  EHU01253.1 362 INLMLpAGKTVALVGRSGSGKSTIASLLTR--FYDIqqgeilldghdlreytLASLRNQVALVSQNVHLFNDTVANNIAYARSEQySREEieKAATMAH 458
                 677777899************999887655..5543335666666666555533444788888888889998888877777743322333113455667 PP

                 HHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  87 ardqlskldngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpqi 152
                 a d ++++d+g+d v+g  g l++  +++++      l+++ +l+lDEa   ld + ++ i++ l +l++ 
  EHU01253.1 459 AMDFIKNMDKGLDTVIGENGVLLSGGQRQRIAiaralLRDCPILILDEATSALDTESERAIQSALDELQKN 529
                 77888888999*************9988887777888**************************99999543 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.5   5.9e+03      72     120 ..     192     240 ..     185     243 .. 0.62
   2 !   17.6   0.0   2.5e-06    0.0017      17      84 ..     370     434 ..     360     446 .. 0.81
   3 ?   -1.5   0.1       1.8   1.3e+03      76     113 ..     511     548 ..     505     551 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.5
  Zeta_toxin  72 aseltqkdaselvekllqeaiengyniivegtlrspdvvkklaealkka 120
                  s+ +q+ ++++++++ q +  ++  +i+ g   + + ++k  ++++++
  EHU01253.1 192 ISKSMQNTMGQVTTSAEQMLKGHKEVLIFGGQDIESERFAKVSNRMRQQ 240
                 5666777777777777777777766666666555555555555555555 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.5e-06
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselv 84 
                 k + l+G +G+GKs++a+ll++  + q++ + ld+ dlRe+    ++ l+++++ +s++++ +  +++
  EHU01253.1 370 KTVALVGRSGSGKSTIASLLTRFYDIQQGEILLDGHDLREYT--LAS-LRNQVALVSQNVHLFNDTVA 434
                 56889********************9999************8..344.55567777777776665555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.8
  Zeta_toxin  76 tqkdaselvekllqeaiengyniivegtlrspdvvkkl 113
                  + ++ +  +++l+e+ +n+ ++++   l+++++++++
  EHU01253.1 511 LDTESERAIQSALDELQKNRTSLVIAHRLSTIEKADEI 548
                 56677788899999999999999999999888888765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   2.2e-06    0.0015      24     167 ..     369     533 ..     353     536 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.2e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipy..salaqalareellrqllde......aesaeleawrekleeala....... 106
                 +  v l+G sG+GKs+++  l r +  + g   l g+  +      y  + l ++ a  +    l ++      a +++ ++ re++e+a++       
  EHU01253.1 369 GKTVALVGRSGSGKSTIASLLTRFYDIQQGEIlLDGHDLRE-----YtlASLRNQVALVSQNVHLFNDtvanniAYARSEQYSREEIEKAATmahamdf 462
                 37899*************99999777774333133333333.....32233444444444444444441212443334444555555555556666666 PP

      AAA_16 107 ......avpelagaea..............srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlles.k.pl 167
                                               +r + +++r+l    r +   +l+lD++   +d++s  ++++ l++l+  + +l
  EHU01253.1 463 iknmdkG--------LdtvigengvllsggQRQRIAIARAL---LR-DC-PILILDEATsALDTESERAIQSALDELQKnRtSL 533
                 6555552........03334444466555566666666666...23.33.5899999986778899999999999998743233 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.6   1.8e+03     133     154 ..     197     218 ..     182     260 .. 0.71
   2 !   16.6   0.0     8e-06    0.0055      86     130 ..     355     400 ..     304     409 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.6
                  ----------SEEEEEETTTEE CS
  RsgA_GTPase 133 klgrGkhTTtavellelaeggl 154
                  ++  G+ TT a ++l+ +++ l
   EHU01253.1 197 QNTMGQVTTSAEQMLKGHKEVL 218
                  3456777777777776655444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 8e-06
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++ +l++++ +l   kt++lvG SG GKSt+   l+   +++ ge+
   EHU01253.1 355 ETPALKNINLMLPAgKTVALVGRSGSGKSTIASLLTRFYDIQQGEI 400
                  355778888888777*****************99998777777776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   4.1e-06    0.0028      22      55 ..     358     391 ..     342     537 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.1e-06
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlal 55 
                   + +  +lpag++++l+G++g+GK+t+a+ l  
  EHU01253.1 358 ALKNINLMLPAGKTVALVGRSGSGKSTIASLLTR 391
                 44578889*********************98865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   1.6e-05     0.011       8      71 ..     372     454 ..     368     538 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka..................e 71 
                 ++++G sG+GK+t +  l++ +d+++      + ++ ++tl+s+ ++  l ++ ++ +++   +                  +
  EHU01253.1 372 VALVGRSGSGKSTIASLLTRFYDIQQGEILlDGHDLREYTLASLRNQVALVSQNVHLFNDTVANniayarseqysreeiekaA 454
                 689*******************9876555586666667777777777777666666666555545654333333333333330 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.3e-06     0.003       1      71 [.     372     446 ..     372     479 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.3e-06
                     EEEE-STTSSHHHHHHHHHHHHT-E...EEEHHHHHHHHHHHHHHTT--TT-HH.HHHHHHHT--EEEEEEEEEE CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglk...yldtgalYRalalaalrrkvdlldea.alvelakevelsfeaekvll 71 
                     +a+ G +gsGKs++a +l++  +++   +l  g+  R ++la+lr++v+l++++ +l++ +  +++ +  ++ + 
      EHU01253.1 372 VALVGRSGSGKSTIASLLTRFYDIQqgeILLDGHDLREYTLASLRNQVALVSQNvHLFNDTVANNIAYARSEQYS 446
                     68899**************98877533378899****************98765256777777777776665554 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.6e-06    0.0053       2      47 ..     369     413 ..     368     441 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.6e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnk 47 
                 g +v l G sgsGKstia  l +   + ++  +lLdG  +R+    
  EHU01253.1 369 GKTVALVGRSGSGKSTIASLLTR-FYDIQQGEILLDGHDLREYTLA 413
                 68999**************9996.5566667789******986555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       4.5   3.1e+03     174     209 ..     188     223 ..     177     264 .. 0.50
   2 !   16.4   0.2   1.1e-05    0.0076      26      80 ..     372     430 ..     362     559 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.5
       DUF87 174 dllrkggsfsnsstdliallleklekegkitiidls 209
                 ++ +  +s +n++ +++++ +++l+ ++++ i+  +
  EHU01253.1 188 RFRNISKSMQNTMGQVTTSAEQMLKGHKEVLIFGGQ 223
                 444444444444444444444444444444443222 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.1e-05
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatililDpHG..EYgkal....ekllsekvkvit 80 
                 +A +g++GsGKS+ + +Ll + + + +   ++lD H   EY  a+      l+s++v++++
  EHU01253.1 372 VALVGRSGSGKSTIA-SLLTRFY-DIQQGEILLDGHDlrEYTLASlrnqVALVSQNVHLFN 430
                 899*********765.6778899.88889999****999**99996666444444444444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.4e-06    0.0044       7     121 ..     375     528 ..     370     560 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.4e-06
     DUF2075   7 tGvaGtGKtvvllnl..lael..edde...............eertavylsvNhpl.vlvlrealakke......ekkkkkeafeklssfinnlsef.. 77 
                  G++G+GK+ +++ l  ++++     e               ++++++++s+N  l ++++ +++a+ +      e+ +k ++++    fi+n++++  
  EHU01253.1 375 VGRSGSGKSTIASLLtrFYDIqqG--EilldghdlreytlasLRNQVALVSQNVHLfNDTVANNIAYARseqysrEEIEKAATMAHAMDFIKNMDKGld 471
                 49*********8765226777550..35555555566666669999999999966516699999999987777766677777788888999999988** PP

     DUF2075  78 ................kkaeekkeepkedvvivDEAhrlltksdqaekqseenqlkelmk 121
                                 + a++++  +++ ++i DEA  +l++++ ++ q     l+el k
  EHU01253.1 472 tvigengvllsggqrqRIAIARALLRDCPILILDEATSALDTESERAIQ---SALDELQK 528
                 ************9987778999999***************955554443...44444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   3.7e-05     0.026      22      38 ..     368     385 ..     360     390 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
      AAA_29  22 kg.atlltGpsGsGKSTl 38 
                 +g ++ l+G+sGsGKST+
  EHU01253.1 368 AGkTVALVGRSGSGKSTI 385
                 566899***********8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0029         2       3      25 ..     373     395 ..     372     420 .. 0.79
   2 ?    5.4   0.1      0.02        14     236     294 ..     480     535 ..     458     536 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0029
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +l+G+ gsGKS++  +l  + ++
  EHU01253.1 373 ALVGRSGSGKSTIASLLTRFYDI 395
                 79***********9999888765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.02
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                  lS G+++ +a++ allr++   ++l++DE  + L+ +  r +   l+el++n++ +++
  EHU01253.1 480 LLSGGQRQRIAIARALLRDC---PILILDEATSALDTESERAIQSALDELQKNRTSLVI 535
                 5799***999**********...*******99999998888888888888777666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   8.2e-05     0.056      19     104 ..     370     515 ..     360     536 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag..........grviglAptgkaAkvLaeelgieastiakllkrlk.......................... 81 
                 ++++l+G+ G+GK+t+ + l++ ++ ++          +        +   + L++++ + +++++ + ++ +                          
  EHU01253.1 370 KTVALVGRSGSGKSTIASLLTRFYDIQQgeilldghdlR--------EYTLASLRNQVALVSQNVHLFNDTVAnniayarseqysreeiekaatmaham 460
                 4789*********************99615555554431........2223334444444444444444333333333335555555555555555555 PP

      AAA_30  82 ...............................grarlepgtllivDEagmv.dtkq 104
                                                +ra l++  +li DEa  + dt++
  EHU01253.1 461 dfiknmdkgldtvigengvllsggqrqriaiARALLRDCPILILDEATSAlDTES 515
                 5555777777777777777777777777776555555557777777765534444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.4e-05     0.051       2      87 ..     369     520 ..     368     531 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.4e-05
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel......................................... 59 
                 ++ ++++G sg+GK+t+a+ l   + f d+ +G   ld++++ + + ++ ++++v+ +                                         
  EHU01253.1 369 GKTVALVGRSGSGKSTIASLL---TRFYDIQQGEILLDGHDLREYT-LASLRNQVALVsqnvhlfndtvanniayarseqysreeiekaatmahamdfi 463
                 57899****************...9999999999999999988774.4444444444433355555555555666666666666666667777777777 PP

      AAA_24  60 .............................aaeladyktlviDtideleelclaevir 87 
                                              +a l+d+ +l++D ++ + +  ++ +i+
  EHU01253.1 464 knmdkgldtvigengvllsggqrqriaiaRALLRDCPILILDEATSALDTESERAIQ 520
                 777888888888888888888888888888888888888888888887776666655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1    0.0001     0.069       1      70 [.     372     473 ..     372     555 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.0001
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..............................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss 69 
                 ++l G +G+GK+t+a  L +   +                              +   +d++++n  +   +++  +++++++   ++ ++d +++ ++
  EHU01253.1 372 VALVGRSGSGKSTIASLLTRFYDIqqgeilldghdlreytlaslrnqvalvsqnVHLFNDTVANNIAYARSEQY--SREEIEKAATMAHAMDFIKNMDK 468
                 6899**************44323366555666667777788888888888888888888888888888888888..88888888888888888887766 PP

      AAA_18  70 ....a 70 
                      
  EHU01253.1 469 gldtV 473
                 55431 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00014     0.095       2      22 ..     372     392 ..     371     551 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 va+vGr+ +GKSt+ + lt+ 
  EHU01253.1 372 VALVGRSGSGKSTIASLLTRF 392
                 9*****************973 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.073      23      67 ..     370     409 ..     358     478 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
      AAA_15  23 eeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedlei 67 
                 + +  l+G+ +sGKS+i+ +l  F + +    + +i ++ +dl++
  EHU01253.1 370 K-TVALVGRSGSGKSTIASLLTRFYDIQ----QGEILLDGHDLRE 409
                 3.779*******************9977....4555555555544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5    0.0028       1.9       2      74 ..     373     514 ..     372     551 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0028
                 EEESSTTSSHHHHHHHHHHHHTHE..EEEEETTTCSSS............................................................. CS
         AAA   2 llyGppGtGKTllakavakelgve..fleisgsellsk............................................................. 37 
                  l+G  G GK+++a+ + +  +++   + ++g++l+ +                                                             
  EHU01253.1 373 ALVGRSGSGKSTIASLLTRFYDIQqgEILLDGHDLR-Eytlaslrnqvalvsqnvhlfndtvanniayarseqysreeiekaatmahamdfiknmdkgl 470
                 68999*********9999997544223445555555.31222222225555555555555566666555555555555555555555666555556666 PP

                 ........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  38 ........yvgesekkirelfkeakekakpsilfiDEidalaksr 74 
                         ++  + ++ r  +++a    ++ il++DE+ +   ++
  EHU01253.1 471 dtvigengVLLSGGQRQRIAIARALLR-DCPILILDEATSALDTE 514
                 654444443333333333333333222.35666666666666655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1       0.4   2.8e+02       5      48 ..     197     240 ..     193     261 .. 0.77
   2 ?    9.1   0.0    0.0014      0.98      12      46 ..     359     393 ..     354     414 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.4
                      SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat   5 sealkelleqikkvaktdlsvlitGesGtGKellaraiheaskr 48 
                      ++++ +++++++++ k + +vli G +    e +a+   + +++
       EHU01253.1 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQDIESERFAKVSNRMRQQ 240
                      567889999999999999*******9988888888876655544 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
                      HHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  12 leqikkvaktdlsvlitGesGtGKellaraiheas 46 
                      l++i+ + +   +v ++G sG+GK+++a+++ +  
       EHU01253.1 359 LKNINLMLPAGKTVALVGRSGSGKSTIASLLTRFY 393
                      5677888888999***************9987755 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.21      26      55 ..     362     391 ..     357     401 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllk 55 
                 ++l+l ++k v lvG +G+GK++i++ l++
  EHU01253.1 362 INLMLPAGKTVALVGRSGSGKSTIASLLTR 391
                 6789999****************9987766 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.7   2.6e+03      90     132 ..     208     250 ..     188     255 .. 0.74
   2 ?   10.5   0.0   0.00038      0.27      16      86 ..     372     451 ..     362     465 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
                 HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE CS
       6PF2K  90 aylneeegqvaifDAtNttrerRklilefveennlkvlflesi 132
                 + + +++ +v if    +  er + + ++++++++k +   si
  EHU01253.1 208 EQMLKGHKEVLIFGGQDIESERFAKVSNRMRQQGMKLVSASSI 250
                 4566677788999999999999999999999999987766555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00038
                 EEEESSTTSSHHHHHHHHHHHHH.......HTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHH..HHHHHHHHHHH CS
       6PF2K  16 ivlvGLpargKtyiskkltrylk.......wlgvrtkvFnvgkyrreaskalsdaeffrpdneealk..lreklalaalk 86 
                 + lvG    gK++i++ ltr+           g++ + + ++  r +++   ++++ f+ + +++++    e++ ++ ++
  EHU01253.1 372 VALVGRSGSGKSTIASLLTRFYDiqqgeilLDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAyaRSEQYSREEIE 451
                 789******************998899988889***********************999876666541045566665555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.4   2.8e+02      68      78 ..      51      61 ..      26      64 .. 0.67
   2 ?    7.8   0.2    0.0056       3.9      63      88 ..     498     523 ..     476     525 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.4
     SbcCD_C 68 fLDEAFsklDe 78
                +LD++F+k+D 
  EHU01253.1 51 LLDDGFGKADR 61
                7*********7 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0056
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllell 88 
                 ++ +++LDEA s lD es +++ ++l
  EHU01253.1 498 DCPILILDEATSALDTESERAIQSAL 523
                 57899************988876665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00067      0.46       2      24 ..     372     395 ..     371     454 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00067
                 EEEE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.n 24 
                 v LvG +G+gKs++a  l +++  
  EHU01253.1 372 VALVGRSGSGKSTIASLLTRFYdI 395
                 679***************999852 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 4193.57
//
Query:       EHU01254.1  [L=333]
Description: lipid A 4'kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.8e-118  394.0   0.1   5.6e-118  393.8   0.1    1.0  1  LpxK            Tetraacyldisaccharide-1-P 4'-kinase
    0.00071   19.5   0.0      0.006   16.5   0.0    2.2  2  MobB            Molybdopterin guanine dinucleotide synthesis 
     0.0027   17.6   0.0     0.0051   16.7   0.0    1.4  1  AAA_26          AAA domain
     0.0044   17.0   0.2     0.0084   16.1   0.2    1.5  1  Glyco_transf_4  Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.039   14.0   0.0       0.11   12.6   0.0    1.8  2  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
      0.041   13.2   0.1      0.066   12.5   0.1    1.3  1  MipZ            ATPase MipZ


Domain annotation for each model (and alignments):
>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.8   0.1  1.9e-121  5.6e-118       3     325 ..      14     319 ..      12     321 .. 0.96

  Alignments for each domain:
  == domain 1  score: 393.8 bits;  conditional E-value: 1.9e-121
                 GGGHHHHHHHHHHHHHHHHHHHTTSS--B--SS-EEEEEESBSS-HSHHHHHHHHHHHTTTS..-EEEEE--TSSSS-S.EEEEEETT-HHHH-HHHHH CS
        LpxK   3 llLlplsllyglvvalrralyragllkserlpvpVivVGNitvGGtGKTPlvialvkllqarglkvgvlSRGYggkskgapvlvsaessaaevGDEpll 101
                 l+L+pls+lyg+++al r  +r+g+ ks+r+p+pV+vVGN+t+GG+GKTP+vi+lv++lq+rgl+vgv+SRGYggk++++p++v+ae+ ++++GDEp+l
  EHU01254.1  14 LVLWPLSVLYGAITALIRLSFRRGWRKSWRAPLPVVVVGNLTAGGNGKTPVVIWLVDALQQRGLRVGVISRGYGGKADRYPLRVTAETATDQAGDEPVL 112
                 78************************************************************************************************* PP

                 HHHHSTSEEEEESSHHHHHHHHHHHC--SEEEEET-SS-TTB--SEEEEEE..EHHHHC--BTTTSSBSS-GGGGGG-SEEEE..........-TTTSS CS
        LpxK 102 larrtgvpvvVgsdRvaaarallakaeldviilDDGlQhyaLardleivvvdaergfgngrllPaGpLREplsrlkradlvilngakaeeeeaekaeek 200
                 +a+rt +pv+V+++R +a++all++++ld+i++DDGlQhyaL+rd eivvvd+ r+fgng++lPaGp+RE++srlk++d+vi+ng++a++ e+      
  EHU01254.1 113 IAQRTAAPVAVAPRRREAIEALLQHHSLDLIVTDDGLQHYALQRDREIVVVDGVRRFGNGWWLPAGPMRERASRLKTVDAVIVNGGEAQQGEI------ 205
                 ****************************************************************************************99998...... PP

                 SS-EEEEEEEE.EETTS-EE-GGGGTTS.-EEEEESSTTHHHHHHHHHHHT--EEEEEEE-TT---TT........----TT-EEEE-HHHHTTSTT.. CS
        LpxK 201 sipvlrmrlepkklallaaaeeealagk.kvlavaGignPerFfktLealglevvetlafpDHhaftaedleeleeeakelgallvtTeKDavklaala 298
                      +m+l+++ +++l ++e+++l+   +v+a+aGig+P rFf+tL+++gl+ v++ af+DHha+++e+l++l      +g++l++TeKDavk++a+a
  EHU01254.1 206 -----AMQLHAGMATHLLSGEQRPLNTLhDVVAMAGIGHPPRFFHTLKQHGLTPVAEIAFADHHAYSEEELSRLVT----PGQTLLMTEKDAVKCRAFA 295
                 .....88888888888889999998665156*******************************************98....6778**************9 PP

                 ......EEEEEEEEEEHHHHHHHHHGG CS
        LpxK 299 kenklelwvlpveaeleealeeallkk 325
                 +++   +w+lpv+a+l+++ ++ ll+ 
  EHU01254.1 296 QSS---WWYLPVDAHLQAEAARLLLDD 319
                 999...**********99999988775 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     2e-06     0.006       7      96 ..      56     145 ..      49     163 .. 0.75
   2 ?    0.0   0.0      0.25   7.3e+02      82     100 ..     181     199 ..     176     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2e-06
        MobB   7 ksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyr..hrkAGAkevlvaskerlalikeleeaelsleellarlsevDlvlv 96 
                   g GKT  +  l+ +l++rglrvg+i     g     p + + +    +AG + vl+a ++   +    ++ + ++e ll++  ++Dl+++
  EHU01254.1  56 AGGNGKTPVVIWLVDALQQRGLRVGVISRGYGGKADRYPLRVTAEtaTDQAGDEPVLIAQRTAAPVAVAPRR-REAIEALLQHH-SLDLIVT 145
                 5689***********************987776665556665554116799999999998887777776433.55677777666.6999886 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.25
        MobB  82 eellarlsevDlvlvEGfk 100
                 +e ++rl++vD v+v G  
  EHU01254.1 181 RERASRLKTVDAVIVNGGE 199
                 677899999******9955 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06    0.0051      11     111 ..      58     170 ..      48     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
      AAA_26  11 gvGKTvvslgLvralkrkgvkvgyfKPiqtgieededselikellgldqtyelpeplalsapl.spelaarqegedid....lekiv............ 92 
                 g GKT v  +Lv+al+++g +vg++     g   d  + +++  + +dq+ +  ep++++++  +p + a +  e+i+                     
  EHU01254.1  58 GNGKTPVVIWLVDALQQRGLRVGVISRGYGGKA-DRYPLRVTAETATDQAGD--EPVLIAQRTaAPVAVAPRRREAIEallqH---Hsldlivtddglq 150
                 67*********************9755444443.344444444444455444..56666555425555555555555554330...234455599999* PP

      AAA_26  93 .kelekdadivvVEGagglg 111
                  ++l+ d +ivvV+G+   g
  EHU01254.1 151 hYALQRDREIVVVDGVRRFG 170
                 99*************97765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.8e-06    0.0084       7     107 ..      64     170 ..      58     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
  Glyco_transf_4   7 hvleLaraLarrGheVtvvtpgddgpleeev..........elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallal 91 
                     +v  L+ aL++rG +V v+++g++g++++ +            + +++ +  +  ++    ++ + ++ +ll+++  D++ + +    g+ + al
      EHU01254.1  64 VVIWLVDALQQRGLRVGVISRGYGGKADRYPlrvtaetatdQAGDEPVLIAQRTAAPVAVAPRRREAIEALLQHHSLDLIVTDD----GLQHYAL 154
                     5667999******************************99888888888888888888899999999999***********8888....4444555 PP

  Glyco_transf_4  92 rrrlgiplVltvHgly 107
                      r + i +V  v    
      EHU01254.1 155 QRDREIVVVDGVRRFG 170
                     5556676666655555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05      0.11       6      33 ..      55      82 ..      50     251 .. 0.87
   2 ?   -1.3   0.0      0.72   2.2e+03      20      44 ..     291     315 ..     288     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
                SSTTSSHHHHHHHHHHHHHHTT--EEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralarrglrVllv 33
                t GG GKT +++ L  al++rglrV ++
  EHU01254.1 55 TAGGNGKTPVVIWLVDALQQRGLRVGVI 82
                78***********************887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.72
                 HHHHHHTT--EEEEEEEESSCCCCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  20 aralarrglrVllvDaDpqannlai 44 
                 +ra+a+  +  l+vDa  qa+++++
  EHU01254.1 291 CRAFAQSSWWYLPVDAHLQAEAARL 315
                 78999999999*****999998873 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05     0.066       2      35 ..      48      82 ..      47     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                EEEE--.SSTTSSHHHHHHHHHHHHHTTT--EEEE CS
        MipZ  2 vivlgn.ekGGsGksttavhvavaLlkkGarvaai 35
                v+v+gn   GG Gk+ + + ++ aL ++G+rv++i
  EHU01254.1 48 VVVVGNlTAGGNGKTPVVIWLVDALQQRGLRVGVI 82
                7999995579***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2396.06
//
Query:       EHU01255.1  [L=405]
Description: uncharacterized DUF1006 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-76  255.4  11.7    1.1e-75  255.2  11.7    1.1  1  HTH_42    Winged helix DNA-binding domain
  ------ inclusion threshold ------
        0.1   12.8   0.1        0.9    9.8   0.0    2.4  2  PCP_red   Proto-chlorophyllide reductase 57 kD subunit


Domain annotation for each model (and alignments):
>> HTH_42  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.2  11.7   1.3e-79   1.1e-75       1     328 []      38     377 ..      38     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 255.2 bits;  conditional E-value: 1.3e-79
      HTH_42   1 verlgavQadp....arahylvLwsRlggydpedleraladrqlveywamratlhlvpaedlpllrpamapalaaelarakgldareaaalaaavlerl 95 
                 ++r+ ++Q+d+    a+++ylvL+sRlg+y p +l++ la+++++eywa++a+  ++p++d++llr++m+   + +++++++++ +e+++ +a++l  +
  EHU01255.1  38 ISRMSLLQIDTinvvASSPYLVLFSRLGDYPPVWLDESLAQGEIFEYWAHEAC--FIPRADYRLLRHRMLSPERLGWKYSADWA-TEHQQEIADLLTYI 133
                 689**************************************************..*****************888877766655.666666999***** PP

      HTH_42  96 aaegpltarelgealarr.gwwgwkkpgkaskralellrlegelvvarrergfekvydlaervlPravrs.....eaealreLvrrylrayGpatvadl 188
                 ++ gp+ +++++   +++ gww+wk    ++kr le l+ +gel+v +r+ +f++vydl  rv+P++ +      e++a+r ++   +r++G+    +l
  EHU01255.1 134 RDNGPVRSADFASGKNHKpGWWAWK----PHKRHLENLFSSGELMVSARH-NFQRVYDLRSRVMPDWQDAlhalsEDDAVRLMLVNSARSLGIFRREWL 227
                 **************9999999****....*******************99.*************99993345566************************ PP

      HTH_42 189 aawsgltkarlraalaelvaegelvevrvergrerlfdlpedlaelpgadtpv..rlLppfDnlllgrarrerlfddfdyrkevytpaakrr....vlp 281
                 a++++l++a +++ +   +a+ge+ +v+v++  e ++ +++++a+l+ +  ++   lL+pfD+l+++r+r   lf dfdyr+e+ytpaakr+    vlp
  EHU01255.1 228 ADYYRLKRAPVKDFILWAQAAGEIMPVEVDGMGE-MWLHRDAQAALATPLIAThtTLLSPFDPLVWDRKRALALF-DFDYRIECYTPAAKRKygyfVLP 324
                 *************9998999**********5445.9****988888888877567********************.*********************** PP

      HTH_42 282 vLvdGrvvGrwdlkadretgvleveaflllea.......eraaleaelerlarf 328
                 vL++G++ +r+d++  r+t+ le+++  +le+       +  ++ +++er+ar+
  EHU01255.1 325 VLHRGQLKARLDARMVRSTALLEINN-IWLEPdvavtvsFLNDVQRAIERFARW 377
                 **************************.9****9999999999***********9 PP

>> PCP_red  Proto-chlorophyllide reductase 57 kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.14   1.3e+03      12      23 ..     321     334 ..     311     340 .. 0.72
   2 ?    9.8   0.0    0.0001       0.9      18      36 ..     365     383 ..     341     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.14
                 S..-HHHHHHHHHH CS
     PCP_red  12 i..PffvRkkaRra 23 
                    P++ R++++++
  EHU01255.1 321 FvlPVLHRGQLKAR 334
                 3459*******987 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHT-SEE CS
     PCP_red  18 kkaRraaEklArerGleeV 36 
                 + ++ra+E++Ar +G e+V
  EHU01255.1 365 NDVQRAIERFARWQGAETV 383
                 6799*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3179.96
//
Query:       EHU01256.1  [L=60]
Description: Trm112p family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-09   38.3   0.2    2.7e-09   37.5   0.2    1.4  1  Trm112p        Trm112p-like protein
     0.0057   16.3   0.3     0.0069   16.1   0.3    1.2  1  A2L_zn_ribbon  A2L zinc ribbon domain
     0.0061   16.0   0.2      0.011   15.2   0.2    1.4  1  TF_Zn_Ribbon   TFIIB zinc-binding
  ------ inclusion threshold ------
      0.022   14.5   0.2      0.027   14.2   0.2    1.2  1  PADR1          PADR1 (NUC008) domain
      0.025   14.4   0.2      0.037   13.9   0.2    1.2  1  zf-C3HC4_5     Zinc finger, C3HC4 type (RING finger)
      0.057   13.5   0.0      0.064   13.4   0.0    1.1  1  DUF2318        Predicted membrane protein (DUF2318)


Domain annotation for each model (and alignments):
>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.2     9e-13   2.7e-09       1      68 []       2      41 ..       2      41 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 9e-13
                BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
     Trm112p  1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
                +++ll+i+aCp+c g+L                        +    +++e++eL+C+ + +a+p++dG
  EHU01256.1  2 DHRLLEIVACPVCNGKL------------------------Y----FNKEQQELICKPDALAFPVRDG 41
                689**************........................8....*********************9 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   2.3e-06    0.0069       4      25 ..       9      30 ..       6      31 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.3e-06
  A2L_zn_ribbon  4 kvCsvCggngilnseqgylvCi 25
                   + C vC+g   +n+eq +l+C+
     EHU01256.1  9 VACPVCNGKLYFNKEQQELICK 30
                   67*******************7 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   3.7e-06     0.011       2      23 ..      10      30 ..       9      30 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.7e-06
                  EETTTTCEECHEETSTTCEEES CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCt 23
                   CP+C+++ l+++ e+ el+C+
    EHU01256.1 10 ACPVCNGK-LYFNKEQQELICK 30
                  5******8.8***********7 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   9.1e-06     0.027      15      34 ..      10      30 ..       7      36 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.1e-06
       PADR1 15 kCpeCkegqlvfdss..gYkCt 34
                 Cp C+ g+l+f+++  +  C+
  EHU01256.1 10 ACPVCN-GKLYFNKEqqELICK 30
                7*****.******997777775 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   1.2e-05     0.037       3      21 ..      10      28 ..       9      33 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
  zf-C3HC4_5  3 iCPvCkssrYlnpdlefli 21
                 CPvC+ + Y+n++ + li
  EHU01256.1 10 ACPVCNGKLYFNKEQQELI 28
                5************977665 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.064      35      55 ..       9      30 ..       2      40 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
     DUF2318 35 daCevCekkgYv.qegeelvCk 55
                 aC vC++k Y+ +e++el+Ck
  EHU01256.1  9 VACPVCNGKLYFnKEQQELICK 30
                59****999998688899***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 494.69
//
Query:       EHU01257.1  [L=249]
Description: 3-deoxy-manno-octulosonate cytidylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-67  226.3   0.0    4.9e-67  226.1   0.0    1.0  1  CTP_transf_3     Cytidylyltransferase
    4.9e-13   49.8   0.1      6e-13   49.5   0.1    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
      0.002   18.0   0.8     0.0081   16.0   0.6    1.9  2  DUF2064          Uncharacterized protein conserved in bacteri
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.028   14.0   0.1    1.2  1  NTP_transferase  Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   0.0   1.1e-70   4.9e-67       1     221 []       4     221 ..       4     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.1 bits;  conditional E-value: 1.1e-70
                   EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE- CS
  CTP_transf_3   1 iaIipARsgSkRlpgKnlldlggkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmseneeiivnlq 97 
                   iaIipAR++S+RlpgK+l d+ gkp++ +v+e+a++s+a ++vivaTD+ e++ +++++g++v++tr ++ s+ter++ev+++f++  +++iivn+q
    EHU01257.1   4 IAIIPARYASTRLPGKPLVDIHGKPMVVHVMERARESGA-SRVIVATDHPEVARAVEAAGGEVCMTRADHHSGTERLAEVIEKFQFA-DDQIIVNVQ 98 
                   79*************************************.***********************************************.********* PP

                   TT-TT--HHHHHHHHHHHHHSTTSSEEEEEEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEEHHHHHCTS...TTTSEEEEEEEEEEHHHHHH CS
  CTP_transf_3  98 GdnPllqeevikkaietlkenqedylstlvkkvgkeeevlnandlkvllddagkalyfeesvipyireeplels...rrlylshagiytfrkeqplk 191
                   Gd+P+++   + +++ +l++++   ++tl++ ++++ee++n+n++kv+ d  g+alyf++++ip++re+ ++ +    ++ l+h+giy++r+  +++
    EHU01257.1  99 GDEPMIPADIVHQVATNLAQADA-GMATLAVSITDAEEAFNPNAVKVVMDARGYALYFSRATIPWDRERYAQSReqiGDTLLRHIGIYAYRAG-FIR 193
                   ********999999999999976.***********************************************9778999**************9.*** PP

                   HHHHSHHHHHSHHHHHT-TTHHHHHTT-EE CS
  CTP_transf_3 192 elvidtptseilekiekleqlrvllegkki 221
                   ++ ++ p++  le+ie leqlrvl++g+ki
    EHU01257.1 194 RYISWEPCP--LEQIELLEQLRVLWYGEKI 221
                   *********..****************998 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.1   1.3e-16     6e-13      15     122 ..      18     127 ..      10     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.3e-16
                   THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH...SSSCEEEEETT-TT--HHHHHHHHH CS
  NTP_transf_3  15 dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalraaa..dadavlvlacDmPlltpelverlla 109
                    K+l++++gkp++ +v++++r++g+++v+v+++++ev++a++  g +v   +  +    + la  +++ +  d++ ++ + +D P++++++v++++ 
    EHU01257.1  18 GKPLVDIHGKPMVVHVMERARESGASRVIVATDHPEVARAVEAAGGEVCMTRADHHSGTERLAEVIEKFQfaDDQIIVNVQGDEPMIPADIVHQVAT 114
                   49******************************************98887777666666677777777744338889999****************** PP

                   CHHHHTSSEEEEE CS
  NTP_transf_3 110 aaaasgadvvvpt 122
                   ++a+++a ++ ++
    EHU01257.1 115 NLAQADAGMATLA 127
                   **98887654433 PP

>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   1.8e-06    0.0081       6      91 ..      38     121 ..      32     129 .. 0.77
   2 ?   -0.7   0.0      0.27   1.2e+03      11      51 ..     140     180 ..     131     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
                 HTTSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT-SE CS
     DUF2064   6 aaadaaevvlaldgaldkalaeqlalakglevlpQqggdlgeRlarafdrafeageepvlliGsDcpqltaalleqAfeaLeeada 91 
                  +++a +v +a+d+   +++ e  a+++++ +++  + +  eRla+++++   a+ + ++ +  D p+++a++++q +++L++ada
  EHU01257.1  38 RESGASRVIVATDHPEVARAVE--AAGGEVCMTRADHHSGTERLAEVIEKFQFADDQIIVNVQGDEPMIPADIVHQVATNLAQADA 121
                 3444445555555555455544..78888888888888999**********7777779999***********************98 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.27
                 SEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHH CS
     DUF2064  11 aevvlaldgaldkalaeqlalakglevlpQqggdlgeRlar 51 
                  +v++++d+ + + +++++  + + e ++Q+ +++g+ l r
  EHU01257.1 140 NAVKVVMDARGYALYFSRATIPWDRERYAQSREQIGDTLLR 180
                 56889999999999999888899999999999999988765 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.2e-06     0.028      21     148 ..      18     137 ..      12     138 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.2e-06
                      SGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEE CS
  NTP_transferase  21 akklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaaelledeksdelvlvLggDhl 114
                       k+lv + gk +++ ++++r+ +sg  + ++v t+   ++v++ ++++   +  v ++  + + gt + +a ++e ++  +++ +v v g+  +
       EHU01257.1  18 GKPLVDIHGK-PMVVHVMERARESGASR-VIVATD--HPEVARAVEAAG-GE--VCMTRADHHSGT-ERLAEVIEKFQFADDQIIVNVQGDEPM 103
                      69********.*****************.666664..455666666554.23..333333333344.334444444444443336677777778 PP

                      ESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTS CS
  NTP_transferase 115 ikdayeeavkkaiekaakgtvtfgivpveeatey 148
                      i  ++   v+   ++a +g++t++++ +++++++
       EHU01257.1 104 IPADIVHQVATNLAQADAGMATLAVSITDAEEAF 137
                      8887777777777777767777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2102.48
//
Query:       EHU01258.1  [L=261]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-25   89.9   0.0    1.6e-25   89.6   0.0    1.1  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0     9e-30   1.6e-25       1     131 []      80     243 ..      80     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 9e-30
      DUF218   1 daivVLG.................aalpllaeRldeaaelyrag...kiivsGg.gadedvseaeamaeylrelgvpeeailledrsrnTeenarfske 78 
                 d+ivVLG                 ++lp    R++e+++ ++++   +++++G   ++++ s+a ++a+++++lgvp+++i l d+ ++T+++a++++ 
  EHU01258.1  80 DYIVVLGggytynpawapssnllnNSLP----RVTEGVRQWQRHpdaTLVFTGAaAGQNPKSNAWVAAQVAESLGVPSSHIRLLDQPKDTAQEAQAVST 174
                 89****9788888777776544444446....************7655******85569******************99******************** PP

      DUF218  79 llkersillVTsafHmpRalllfrkag.....apt................psaealsaseesalraalrEylg 131
                 l++++++llVTsa HmpRa+++f++ag     ap+                ps+  +s     ++++a++E+lg
  EHU01258.1 175 LIGHHPFLLVTSANHMPRAMRFFNQAGlkpiaAPAnqlaitsplnwwerfyPSPLWMS-----HSERAIYETLG 243
                 **6569********************98787633344544443333333222222222.....56688888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2056.98
//
Query:       EHU01259.1  [L=263]
Description: putative S-adenosyl-L-methionine-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-14   54.7   0.0    1.8e-14   54.1   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
    1.2e-14   54.5   0.0    1.7e-14   54.0   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    6.5e-14   52.4   0.0    9.5e-14   51.9   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
    1.8e-13   50.5   0.0    2.3e-13   50.2   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    4.9e-12   46.5   0.0    7.2e-12   45.9   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    1.1e-05   24.9   0.0    1.6e-05   24.4   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00019   21.4   0.0    0.00022   21.2   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
    0.00025   20.6   0.0    0.00033   20.2   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00083   18.7   0.0     0.0012   18.3   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0093   15.7   0.0      0.016   14.9   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
  ------ inclusion threshold ------
      0.015   14.4   0.0      0.021   13.9   0.0    1.3  1  DREV             DREV methyltransferase
      0.035   13.7   0.0       0.05   13.2   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.17   11.8   0.0       0.26   11.1   0.0    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   1.3e-17   1.8e-14       1      95 [.      51     148 ..      51     149 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 1.3e-17
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G G G+++  la rg++++ +Dls eml++a+e+a   g+  +++f + +a+++    d+ +Dlv+ + vl++v++pe +lk +   L+p 
       EHU01259.1  51 LDAGGGIGQISSGLAARGHQILLCDLSGEMLRRAQENADALGVshNMQFKQISAQQVgEHLDKPVDLVLFHAVLEWVAEPETVLKALFDTLRPR 144
                      8********************************************************88*********************************** PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+l 
       EHU01259.1 145 GVLS 148
                      *985 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   1.2e-17   1.7e-14      11     163 ..      32     205 ..      22     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.2e-17
  Methyltransf_23  11 dklerllpklragg...rvLdiGcGtGillevlrengfsvtgvDlspeaveiae.......kakkaqkdqfdeqeaae....pqgkfdlIvlre 90 
                      d+le llp l +++   +vLd G G G  ++ l+++g+++ + Dls e+  +a+           +++ qf +++a++     ++  dl+    
       EHU01259.1  32 DELEALLPSLTSSSpslNVLDAGGGIGQISSGLAARGHQILLCDLSGEMLRRAQenadalgV---SHNMQFKQISAQQvgehLDKPVDLVLFHA 122
                      78888887744444455*************************************99996663...34444433444443334888********* PP

  Methyltransf_23  91 vlehvpdppellrqiatllkpgGylllseplaslk.edrl.lldwlylvpagrhi........sffsarslkelleeaGlevv 163
                      vle+v  p+ +l+ +++ l+p G+l l+ ++      + l l + +yl+++ +++        +  + +++ ++le+ G+++ 
       EHU01259.1 123 VLEWVAEPETVLKALFDTLRPRGVLSLMFYNLHGLtLRTLtLGNFGYLRTNLTKRkkrtlspdYPRDPDDVSRWLEACGFQIE 205
                      ******************************87654333332444577766663333334458777899************986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   6.9e-17   9.5e-14       1      97 []      50     145 ..      50     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 6.9e-17
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp.fedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vLd+G G G+++  la+r+  ++++ +D+s eml++a+e+a++ g+  n++f q +a+++    d+ +Dlv+   +l+++ ++  e++lk +++
       EHU01259.1  50 VLDAGGGIGQISSGLAARG--HQILLCDLSGEMLRRAQENADALGVshNMQFKQISAQQVGeHLDKPVDLVLFHAVLEWVAEP--ETVLKALFD 139
                      9*****************5..**********************99999***********9725899*******655**99865..599****** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                       L+p G
       EHU01259.1 140 TLRPRG 145
                      ****98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.6e-16   2.3e-13       3     109 ..      46     149 ..      44     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.6e-16
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                        l+vlD+G G G+++  la +   + ++ + D s e++++A+ena+ lg++ n++F+q ++++  ++l d+++Dl+l ++vl  +a+p+ +l+
       EHU01259.1  46 PSLNVLDAGGGIGQISSGLAAR---GHQILLCDLSGEMLRRAQENADALGVShNMQFKQISAQQVGEHL-DKPVDLVLFHAVLEWVAEPETVLK 135
                      5689****************54...678************************************77654.59********************** PP

  Methyltransf_31  96 eiervlkpggilli 109
                       +++ l+p g+l +
       EHU01259.1 136 ALFDTLRPRGVLSL 149
                      **********9975 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   5.3e-15   7.2e-12       1      99 []      51     147 ..      51     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 5.3e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L+ G+G G++++ l+++  + +++ +D+s +++ +a+e   + +    +n++++++++ +  +   + +Dlv+ + vl+++++++ vl+ + + 
       EHU01259.1  51 LDAGGGIGQISSGLAAR--GHQILLCDLSGEMLRRAQENADALGVS--HNMQFKQISAQQVGEHldKPVDLVLFHAVLEWVAEPETVLKALFDT 140
                      89***************..**************7777777777765..5666666665544444669*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      L+p G+l
       EHU01259.1 141 LRPRGVL 147
                      *****87 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.2e-08   1.6e-05      44     151 ..      43     149 ..      26     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.2e-08
                      -S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS.-T-EEEEEEES-GGG-S-HHHH CS
  Ubie_methyltran  44 avkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfe.ddsfDvvtvsfGlrnvtDklka 135
                      ++ ++ +vlD  gG g ++  l+    +  ++ ++D++ +mL+ +++ +   g++ n++f q +a+++ ++ d+  D+v     l  v++ +++
       EHU01259.1  43 SSSPSLNVLDAGGGIGQISSGLAA---RGHQILLCDLSGEMLRRAQENADALGVShNMQFKQISAQQVGEHlDKPVDLVLFHAVLEWVAEPETV 133
                      5566779**********9998865...34589*********************999**********997653799******************* PP

                      HHHHHHHEEEEEEEEE CS
  Ubie_methyltran 136 LkeayrvlkpGGrlvv 151
                      Lk ++  l+p G l  
       EHU01259.1 134 LKALFDTLRPRGVLSL 149
                      ***********98865 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.6e-07   0.00022      15     100 ..      36     113 ..      29     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
  Methyltransf_32  15 kllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssktltk 100
                      +ll +l+++s++l+v+D+G G g  s+ la      +++++  d++ e+ ++a++ a++lg  ++++++f++ s ++  +  +l+k
       EHU01259.1  36 ALLPSLTSSSPSLNVLDAGGGIGQISSGLAA----RGHQILLCDLSGEMLRRAQENADALG--VSHNMQFKQISAQQVGE--HLDK 113
                      5667778899*********************....59************************..999******99888754..4444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.4e-07   0.00033      22     102 ..      36     119 ..      32     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.4e-07
                 HHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.....EEEEE-STTTTSTTS-EEEEE CS
         MTS  22 lLletlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.....vevvasdvleeveekkfdliv 102
                  Ll  l+++  s +vlD G G+G ++  la++  +  + l+d + + l+ a+en+ a +++      ++ a++v e+++ k +dl++
  EHU01259.1  36 ALLPSLTSSsPSLNVLDAGGGIGQISSGLAARGHQ--ILLCDLSGEMLRRAQENADALGVShnmqfKQISAQQVGEHLD-KPVDLVL 119
                 57777877778889*****************9888..9*******************9999553333334444444444.6666655 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.4e-07    0.0012      63     164 ..      47     149 ..      34     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.4e-07
                 T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGT..SGGGHHHHHHHHHHHS-TT CS
        CMAS  63 GmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehv..gkenydtffkklkkllked 159
                   ++Ld G G G++    ++r + +++   lS e  ++a+++ d+l+++++ + k    +++ e++d+ v + +f +v   +++ +t  k+l+++l++ 
  EHU01259.1  47 SLNVLDAGGGIGQISSGLAAR-GHQILLCDLSGEMLRRAQENADALGVSHNMQFKQISAQQVGEHLDKPVDLVLFHAVleWVAEPETVLKALFDTLRPR 144
                 5689*****************.*****************************************************999554677888999999999999 PP

                 -EEEE CS
        CMAS 160 Gllll 164
                 G+l l
  EHU01259.1 145 GVLSL 149
                 98755 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.016      78     125 ..      70     118 ..      59     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                 -EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EE CS
     UPF0020  78 klygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvi 125
                 ++   Dl  +++++a+eNa + gv++ ++f+q  a+++  + ++ vd++
  EHU01259.1  70 QILLCDLSGEMLRRAQENADALGVSHNMQFKQISAQQVGeHLDKPVDLV 118
                 566679999****************************986566688876 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.021      93     189 ..      45     150 ..      34     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
        DREV  93 qedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkk..........kkynvlsale.lqetdvkldlilclnlldrcfdplklledirsalep 180
                   + ++ld G G G+i+  +a   +++   +ls +m  r +            +++ +sa +  ++ d   dl+l   +l+   +p ++l+ +  +l+p
  EHU01259.1  45 SPSLNVLDAGGGIGQISSGLAARGHQILLCDLSGEMLRRAQEnadalgvshnMQFKQISAQQvGEHLDKPVDLVLFHAVLEWVAEPETVLKALFDTLRP 143
                 556789******************************99977522222222125688888888334568889**************************** PP

        DREV 181 ngrvivalv 189
                 +g  +++l+
  EHU01259.1 144 RG--VLSLM 150
                 98..45554 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.7e-05      0.05       4      64 ..      50     110 ..      48     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellak 64 
                      +lD+ +G G  +  +a  ++++   + + e l  aq+Na + gvs+++++++ + +++ ++
       EHU01259.1  50 VLDAGGGIGQISSGLAARGHQILLCDLSGEMLRRAQENADALGVSHNMQFKQISAQQVGEH 110
                      7999999999999************************************999887775554 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.26      13      66 ..      59     113 ..      49     144 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                 HHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCTTTTSS-HHHHCCCHHC CS
     3HCDH_N  13 giaavfasagleVvlvdiseealekalekiek.sleklvekgklkeeeveaalar 66 
                 +i + +a++g+++ l+d s e l++a+e++ +  +++ ++ +++++++v ++l++
  EHU01259.1  59 QISSGLAARGHQILLCDLSGEMLRRAQENADAlGVSHNMQFKQISAQQVGEHLDK 113
                 57778899**********************9976777777777776666655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2169.45
//
Query:       EHU01260.1  [L=440]
Description: putative Ca2+ binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-83  278.7   4.2    2.6e-83  277.5   4.2    1.6  1  MukF_M    MukF middle domain
    5.1e-78  260.7   1.9    5.1e-78  260.7   1.9    1.8  2  MukF_C    MukF C-terminal domain
    8.9e-59  196.7   0.1    2.3e-58  195.4   0.1    1.8  1  KicB      MukF winged-helix domain
  ------ inclusion threshold ------
      0.094   13.1   0.0       0.19   12.1   0.0    1.5  1  PapD_C    Pili assembly chaperone PapD, C-terminal domain
        2.4    8.0   7.7       0.92    9.4   0.1    3.0  4  CK2S      Casein Kinase 2 substrate


Domain annotation for each model (and alignments):
>> MukF_M  MukF middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.5   4.2   7.4e-87   2.6e-83       1     161 []     121     281 ..     121     281 .. 1.00

  Alignments for each domain:
  == domain 1  score: 277.5 bits;  conditional E-value: 7.4e-87
                 -HHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH CS
      MukF_M   1 sslklsiqlsivadeleraaeaaeeggdekaWrknvfarlkysvaeildridltqrvmdeqqqqvkeeiaellnkdWreaisscekllsetsstlrelq 99 
                 s+l+ls+qlsiva+el+raa+aa+e+gde +W++nvfa+lkysvaei+d+id+tqr+mdeqqq+vk++iaellnkdWr+aissce llsets+tlrelq
  EHU01260.1 121 STLRLSMQLSIVAAELKRAADAAQENGDEFYWHRNVFAPLKYSVAEIFDSIDMTQRLMDEQQQAVKADIAELLNKDWRAAISSCEMLLSETSGTLRELQ 219
                 68************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      MukF_M 100 dtleaaGdklqaellriqeavlgreelelvdklildlqskldriisWGqqaidlWigydrhv 161
                 dtleaaGdklq +llriq+a+l++ +l +vdkl++dlqskldri+sWGqqaidlWigydrhv
  EHU01260.1 220 DTLEAAGDKLQENLLRIQDATLDSPDLGFVDKLVFDLQSKLDRITSWGQQAIDLWIGYDRHV 281
                 *************************************************************8 PP

>> MukF_C  MukF C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.95   3.4e+03      16      41 ..     182     207 ..     166     224 .. 0.59
   2 !  260.7   1.9   1.4e-81   5.1e-78       1     158 []     283     440 .]     283     440 .] 1.00

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.95
                 HHHHHHHHHHGGGS-EEEEEE----E CS
      MukF_C  16 sqrlresikdyfdepwlltvadaerl 41 
                  q ++  i +  +++w   ++  e l
  EHU01260.1 182 QQAVKADIAELLNKDWRAAISSCEML 207
                 34455666666666666666655555 PP

  == domain 2  score: 260.7 bits;  conditional E-value: 1.4e-81
                 HHHHHHTTTCTTSHHHHHHHHHHHHGGGS-EEEEEE----EEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      MukF_C   1 kfirtaidldknrvfsqrlresikdyfdepwlltvadaerlldlrdeelalrdeevtGelPeeleyeeleeieeqlaerieealavykekgkpldlaev 99 
                 kfirtaid+dknrvf+qrlr s+++yfd+pw+lt+a+aerl d+rd+el+lr++ev+GelP+ele+ee++ei+eqla++ieeal++yk+++kpl+la+v
  EHU01260.1 283 KFIRTAIDMDKNRVFAQRLRVSVQNYFDSPWALTYANAERLYDMRDDELTLRNDEVMGELPAELEFEEFNEIREQLAAMIEEALTIYKTQQKPLNLAAV 381
                 8************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      MukF_C 100 lrdylakyPksqhfdvarllvdqavrlGvaeedlsglqpeWkaindaGakvqahvidky 158
                 +rdyla+yP+++hfd+ar++vdqavrlGvae+dl+gl  eW+aind+Gakvqahvidky
  EHU01260.1 382 MRDYLAQYPRARHFDLARIVVDQAVRLGVAEADLAGLPVEWQAINDYGAKVQAHVIDKY 440
                 **********************************************************9 PP

>> KicB  MukF winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.1   6.4e-62   2.3e-58       1     115 []       3     117 ..       3     117 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.4 bits;  conditional E-value: 6.4e-62
                 XXXXHHHHHHHHHHHTT--EEE-HHHHHHHHHHHHHHHT--SSSEEHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHHHHTTSEEEEE-SSSTTSEEE CS
        KicB   1 elsqtipelvsWvkeedlslslpterlafllaiavlneerldeelseaelvdafrlvskafeqseetlavrannaindlvkqrllsrftseltegesiy 99 
                 e+sqt+pelvsW++++d+sl+lp+erlafllaia+ln er+d+e+se++lvdafr+vskafeq++et+ vrannaind+v+qrll+rftselteg++iy
  EHU01260.1   3 EFSQTVPELVSWARKNDFSLALPVERLAFLLAIATLNGERMDGEMSEGDLVDAFRHVSKAFEQTSETVLVRANNAINDMVRQRLLNRFTSELTEGNAIY 101
                 789************************************************************************************************ PP

                 EE-HHHHHHHHHHHS- CS
        KicB 100 rltplgigitdyyirq 115
                 rltpl+igitdyyirq
  EHU01260.1 102 RLTPLAIGITDYYIRQ 117
                 **************98 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.2e-05      0.19      46      62 ..     416     432 ..     404     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
                 TT-EEEEEEE-TTS-EE CS
      PapD_C  46 agatvsftvINDyGgiv 62 
                 ag  v++++INDyG+ v
  EHU01260.1 416 AGLPVEWQAINDYGAKV 432
                 67789*********976 PP

>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   7.1e+03      46      67 ..      68      89 ..      52      95 .. 0.49
   2 ?   -0.0   0.1       0.2   7.3e+02      53      77 ..     170     194 ..     161     196 .. 0.80
   3 ?    1.4   0.3     0.072   2.6e+02      12      58 ..     193     238 ..     188     268 .. 0.69
   4 ?    9.4   0.1   0.00026      0.92      69     113 ..     336     382 ..     328     385 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
        CK2S 46 ygtplrdfpdlqerLrekqlea 67
                +++ +r+   +++ +r+++l+ 
  EHU01260.1 68 ETVLVRANNAINDMVRQRLLNR 89
                2233444444555555555554 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
        CK2S  53 fpdlqerLrekqlealeevlakLre 77 
                   d+ +rL+ +q++a+   +a+L +
  EHU01260.1 170 SIDMTQRLMDEQQQAVKADIAELLN 194
                 568999********99988887755 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.072
        CK2S  12 qrekWkellseseslleslsnlaeqlqalqnvklygtplrdfpdlqe 58 
                 + + W+++ s +e ll+  s  +  lq + +++ ++   + +  +q+
  EHU01260.1 193 LNKDWRAAISSCEMLLSETSGTLRELQDTLEAAGDKL-QENLLRIQD 238
                 5678999999999999999988888888888776654.344444444 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00026
        CK2S  69 eevlakLrekl..eelqkvrdsleklvrdalqlyeekadklslkeli 113
                 +ev+ +L  +l  ee++++r++l+ + ++al+ y++++++l+l++++
  EHU01260.1 336 DEVMGELPAELefEEFNEIREQLAAMIEEALTIYKTQQKPLNLAAVM 382
                 66777776664227***************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3181.79
//
Query:       EHU01261.1  [L=241]
Description: protein involved in chromosome partitioning [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.3e-126  418.1   0.6   6.5e-126  417.9   0.6    1.0  1  MukE      MukE-like family
      0.003   17.3   0.7      0.037   13.8   0.7    2.1  1  DUF4194   Domain of unknown function (DUF4194)
  ------ inclusion threshold ------
      0.034   13.1   0.0      0.042   12.8   0.0    1.1  1  Tfb2      Transcription factor Tfb2
      0.079   11.7   0.0       0.15   10.8   0.0    1.4  2  DCD       2'-deoxycytidine 5'-triphosphate deaminase (DCD)


Domain annotation for each model (and alignments):
>> MukE  MukE-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.9   0.6  1.4e-129  6.5e-126       1     223 [.      10     231 ..      10     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 417.9 bits;  conditional E-value: 1.4e-129
        MukE   1 lpvklaqaianplfpeldsqlrsGrhisldeldnhaflldfqeeleefyrrynvelirapeGffylrprsttliarsvlseldmlvGkvlcylylsper 99 
                 +pvklaqa+anp+fp+ldsqlr+Grhi+++eldnhafl+d+q+ leefy+rynvelirapeGffylrprsttli+rsvlseldm+vGk+lcylylsper
  EHU01261.1  10 MPVKLAQALANPIFPALDSQLRAGRHIGIEELDNHAFLMDYQQYLEEFYTRYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYLYLSPER 108
                 89************************************************************************************************* PP

        MukE 100 laneGifsaqelydellsladekkllklvnqrstGsdldkqklqekvrtslrrlrrlGmvtaleedsekfrisesvfrfgadvrsgddpreaqlrlird 198
                 laneGif++qelydellslade+kllklvnqrstGsdld++klqek+r+sl+rlrrlGmv++ ++ds+kfri+esvfrfgadvrsgdd+reaqlrlird
  EHU01261.1 109 LANEGIFTQQELYDELLSLADESKLLKLVNQRSTGSDLDRAKLQEKMRASLSRLRRLGMVWFFGNDSSKFRITESVFRFGADVRSGDDAREAQLRLIRD 207
                 *************************************************************************************************** PP

        MukE 199 Geavtadeelekeslledededeee 223
                 Gea+  d+ ++ +++++d++e++++
  EHU01261.1 208 GEAMLLDN-TTAATEADDSEENDSD 231
                 *****666.4455555555555554 PP

>> DUF4194  Domain of unknown function (DUF4194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.7   8.2e-06     0.037      19     156 ..      45     183 ..      30     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.2e-06
     DUF4194  19 eallryqeavreyLadlglelvldedegvaflrqveaeeeeelprllrrrsLsleetllLlvLRklyqeaeregs.lservv......vsveeivekle 110
                 ++l++yq++++e+     +el+  + eg+ +lr++++   + +pr +  + L++++  +L+ L +  ++  +eg  ++++++       ++ ++   ++
  EHU01261.1  45 AFLMDYQQYLEEFYTRYNVELIRAP-EGFFYLRPRST---TLIPRSVLSE-LDMMVGKILCYLYLSPERLANEGIfTQQELYdellslADESKLLKLVN 138
                 7899999999999999999997655.79999999999...3366666666.777777777777666666666666766666511111134444455555 PP

     DUF4194 111 s.flpldrdeakfkkrldaalrklkelgllrrldgdeertryeIrpi 156
                 +     d d+ak +++++a l++l++lg + +  +d+ +  ++I+ +
  EHU01261.1 139 QrSTGSDLDRAKLQEKMRASLSRLRRLGMVWFFGNDSSK--FRITES 183
                 5555667799***********************976666..999976 PP

>> Tfb2  Transcription factor Tfb2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.4e-06     0.042     221     273 ..     137     189 ..     115     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.4e-06
        Tfb2 221 LsslelgkaYsvealsetqkemledLrdlGLvyqrkkkskrFypTrlattLts 273
                 + + ++g++ +  +l+e+ ++ l+ Lr+lG+v+   ++s++F +T+ +  +  
  EHU01261.1 137 VNQRSTGSDLDRAKLQEKMRASLSRLRRLGMVWFFGNDSSKFRITESVFRFGA 189
                 34456788999999*************************99****99887666 PP

>> DCD  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05      0.15     213     273 ..      31      92 ..      12     100 .. 0.88
   2 ?   -3.5   0.0      0.75   3.4e+03     148     175 ..     190     220 ..     186     228 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
         DCD 213 rakkhtgviDldkig.alevedfweplkakegeklildpdeFYilasreavkvppdlaaemv 273
                 ra +h g+ +ld+++  ++ +++ e+ +++ + +li  p+ F+ l  r +  +p ++ +e+ 
  EHU01261.1  31 RAGRHIGIEELDNHAfLMDYQQYLEEFYTRYNVELIRAPEGFFYLRPRSTTLIPRSVLSELD 92 
                 88899999999987625799***********************************9988864 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.75
         DCD 148 lvrkGs..rLsqirf.rrgeaklsdeelkel 175
                  vr+G+  r +q+r+ r+gea+l d+++++ 
  EHU01261.1 190 DVRSGDdaREAQLRLiRDGEAMLLDNTTAAT 220
                 5777752256788872456666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1791.26
//
Query:       EHU01262.1  [L=1488]
Description: chromosome partitioning protein/nucleotide hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     2e-121  404.0   0.0     2e-121  404.0   0.0    3.1  3  MukB            MukB N-terminal
    1.4e-75  252.6   0.4    1.4e-75  252.6   0.4    3.8  5  MukB_hinge      MukB hinge domain
    5.4e-15   55.4   3.0    7.6e-15   54.9   0.0    2.9  3  SbcCD_C         Putative exonuclease SbcCD, C subunit
    4.3e-08   32.8   0.2    8.6e-08   31.8   0.2    1.5  1  AAA_29          P-loop containing region of AAA domain
    7.2e-05   23.4   0.1    7.2e-05   23.4   0.1    7.6  2  AAA_23          AAA domain
     0.0018   17.9   2.2     0.0018   17.9   2.2    3.0  3  DUF4238         Protein of unknown function (DUF4238)
  ------ inclusion threshold ------
      0.022   14.2   2.2        4.1    6.8   0.0    3.1  2  SMC_N           RecF/RecN/SMC N terminal domain
      0.028   14.2   0.4      0.028   14.2   0.4    7.7  8  Nsp1_C          Nsp1-like C-terminal region
      0.067   13.5   0.2       0.51   10.6   0.0    2.6  2  DUF3713         Protein of unknown function (DUF3713)
       0.31   11.5   0.0       0.31   11.5   0.0    6.7  5  ABC_tran        ABC transporter
        3.1    7.4  11.0       0.36   10.5   0.0    3.3  3  AAA_15          AAA ATPase domain
        4.5    5.9   7.6       0.59    8.8   0.4    2.4  2  HlyD_2          HlyD family secretion protein


Domain annotation for each model (and alignments):
>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.0   0.0  1.3e-124    2e-121       1     226 []       2     227 ..       2     227 .. 1.00
   2 ?   -2.2   0.6       1.9   2.9e+03     132     159 ..     375     402 ..     333     420 .. 0.45
   3 ?   -1.9   0.1       1.6   2.4e+03     130     179 ..    1239    1288 ..    1231    1300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 404.0 bits;  conditional E-value: 1.3e-124
                 XX--EEEEEEEEEETTEEEEEE-HHHHHHHHHS--SHHHHHHHHHHHHHHS--TTT--------------------GGGB-SSEEEEEEEEE-TTS-EE CS
        MukB   1 iergkfksltlinWnGffartfdldelvttlsGgnGaGksttmaafvtaliPdlsllhfrntteaGatsgsrdkGlyGklkaGvcysvlevvnsreqrl 99 
                 iergkf+sltlinWnGffartfdldelvttlsGgnGaGksttmaafvtaliPdl+llhfrntteaGatsgsrdkGl+Gkl+aGvcy++l+vvnsr+qr+
  EHU01262.1   2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLRAGVCYAMLDVVNSRHQRV 100
                 79************************************************************************************************* PP

                 EEEEEEEE-SSTTT-EEEEEEEEES--TT--HHHHHEE--SSS--EE--HHHHHHHHHTSTT-EEEE-S-HHHHHHHHHHTTSBSS---SHHHHHHHHH CS
        MukB 100 lvgvrleqvagrdkkvdikpfalqgleedvkltdvlleklddkkarvrelnelkekleelegvrlkkfnsvtdyhallfdlGvipkrlrssedrskfyr 198
                 +vgvrl+qvagrdkkvdikpf+++gl++d+ +td+l+e l+ ++arv++lne+ke++e+legv++++++svtdyha++fdlG++p+rlr+++drskfyr
  EHU01262.1 101 VVGVRLQQVAGRDKKVDIKPFSIHGLPTDTLPTDMLTEILNSRQARVLPLNEVKERVEALEGVQYRQYSSVTDYHAMMFDLGIVPRRLRTASDRSKFYR 199
                 *************************************************************************************************** PP

                 HHHHHHSSS-HHHHHHHHHHHBS---XX CS
        MukB 199 lieaslyGGissaitrslrdyllpensG 226
                 lieaslyGGissaitrslrdyllpensG
  EHU01262.1 200 LIEASLYGGISSAITRSLRDYLLPENSG 227
                 **************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.9
                 HHHHEE--SSS--EE--HHHHHHHHHTS CS
        MukB 132 tdvlleklddkkarvrelnelkekleel 159
                  ++  e+    +a  +e+ elk++l+++
  EHU01262.1 375 REIQEENEARAEAAELEVDELKSQLADF 402
                 1222222222222233344444444444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
                  -HHHHHEE--SSS--EE--HHHHHHHHHTSTT-EEEE-S.-HHHHHHHHHH CS
        MukB  130 kltdvlleklddkkarvrelnelkekleelegvrlkkfn.svtdyhallfd 179 
                  ++ +++ ++++ +++r+r+ln+  ++++  ++vr  + n  v++ ha+l+d
  EHU01262.1 1239 SVANIIRKTIQREQNRIRQLNQGLQTVSF-GQVRSVRLNvNVRETHAMLLD 1288
                  56788889999999999999987766654.555555444268888988887 PP

>> MukB_hinge  MukB hinge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.5       8.1   1.2e+04     141     160 ..     382     401 ..     365     410 .. 0.78
   2 ?   -2.1   0.4       1.8   2.6e+03       6      32 ..     555     584 ..     551     595 .. 0.63
   3 !  252.6   0.4   9.3e-79   1.4e-75       2     167 .]     645     810 ..     644     810 .. 0.99
   4 ?   -2.5   0.0       2.5   3.7e+03      30      69 ..     813     852 ..     811     865 .. 0.71
   5 ?   -4.3   0.3       8.7   1.3e+04     141     161 ..    1079    1099 ..    1070    1104 .. 0.49

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8.1
  MukB_hinge 141 ekrleaLraerdelaeelak 160
                 e+r+ea + e del+ +la+
  EHU01262.1 382 EARAEAAELEVDELKSQLAD 401
                 67888888888988888874 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
  MukB_hinge   6 laerkerLekeieeLlkp...gGsedirLl 32 
                 l+  +++Le +ie+L++    +G++++ ++
  EHU01262.1 555 LEGLQRELEAQIEQLNSSvadAGEQRMLMR 584
                 556678999999999864222455555554 PP

  == domain 3  score: 252.6 bits;  conditional E-value: 9.3e-79
  MukB_hinge   2 erdelaerkerLekeieeLlkpgGsedirLlelaerlggvLLseiyddisledapyfealyGplrkAivvkDleavkeklegledcpddlyliegdpda 100
                 erde+a+rk+++e++ie+L++pgG+ed+rL++laer+ggvLLseiydd++l+dapyf+alyGp+r+Aivv+Dl+ v+e+l+gle+cp+dlyliegdp++
  EHU01262.1 645 ERDEVAARKREIEQQIERLSQPGGAEDPRLNQLAERFGGVLLSEIYDDVTLDDAPYFSALYGPSRHAIVVPDLSLVREQLDGLEECPEDLYLIEGDPQS 743
                 79************************************************************************************************* PP

  MukB_hinge 101 fdesvfeaeeledavlvkdsdrqlRysrfPevPlfGraaRekrleaLraerdelaeelakaafdvqk 167
                 fd+svf+++el++av+vk ++rq+RysrfP++PlfGraaRe++le L++erd lae++a+ +fdvqk
  EHU01262.1 744 FDDSVFSVDELQNAVVVKVAERQWRYSRFPKIPLFGRAARENQLELLNNERDRLAERYATLSFDVQK 810
                 *****************************************************************97 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.5
  MukB_hinge  30 rLlelaerlggvLLseiyddisledapyfealyGplrkAi 69 
                 rL++   r+ g+ L+ ++dd +     ++ a+ G+l +A+
  EHU01262.1 813 RLHQSFSRFIGSHLAVAFDDDPEAQIRQLGARRGELERAL 852
                 6677777888888888888877777777777777777775 PP

  == domain 5  score: -4.3 bits;  conditional E-value: 8.7
  MukB_hinge  141 ekrleaLraerdelaeelaka 161 
                  ek+l   +ae+d+l+++l++ 
  EHU01262.1 1079 EKQLTFCEAEMDNLQKKLRQL 1099
                  333333455555555555544 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.9   5.9e+03      27      49 ..      26      46 ..      21      52 .. 0.62
   2 ?   -2.8   0.0       5.1   7.6e+03       4      38 ..     289     324 ..     287     327 .. 0.72
   3 !   54.9   0.0   5.1e-18   7.6e-15       2      89 ..    1336    1424 ..    1335    1425 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.9
     SbcCD_C 27 srssgtlSGGekqflaylalaaa 49
                ++ ++tlSGG +    ++++ aa
  EHU01262.1 26 DELVTTLSGGNG-AGKSTTM-AA 46
                566889****98.3333333.33 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
     SbcCD_C   4 ldyRnylsfevevr.dedgkekelsrssgtlSGGek 38 
                 l+ Rn l  + ++  +e+ + +e+ r+ ++ SG e+
  EHU01262.1 289 LQLRNELFTSRKQLaSEQYRHVEMARELAEHSGAEN 324
                 566666665555555666677789999******997 PP

  == domain 3  score: 54.9 bits;  conditional E-value: 5.1e-18
     SbcCD_C    2 evldyRnylsfevevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaeg.repa...lrlvfLDEAFsklDeesiatllelle 89  
                  e+ldyRnyl++evev+  +g++++l+++sg+lS+Ge+  + + +l++ + ++ +++++ r ++   +rl+fLDEA ++lD++siatl+el+e
  EHU01262.1 1336 ELLDYRNYLEMEVEVN--RGSDGWLRAESGALSTGEAIGTGMSILVMVVQSWEEESRRlRGKDispCRLLFLDEA-ARLDARSIATLFELCE 1424
                  89**************..999999**********************88888887776443333667*********.**************98 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   5.8e-11   8.6e-08       3      49 ..       9      54 ..       7      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5.8e-11
      AAA_29  3 rlqlvNWgtfdghtieidlkg.atlltGpsGsGKSTllDAiqalLvpa 49
                +l l+NW  f  +t+++d  + +t l+G +G+GKST + A+ + L+p+
  EHU01262.1  9 SLTLINWNGFFARTFDLD--ElVTTLSGGNGAGKSTTMAAFVTALIPD 54
                789**************9..668***********************97 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   4.8e-08   7.2e-05       1      44 [.       9      52 ..       9      92 .. 0.92
   2 ?    2.2   1.6      0.15   2.2e+02     129     199 ..    1183    1262 ..    1127    1266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.8e-08
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLy 44
                +L++ n++ f   ++d++  +t ++G NGaGK+T + A+  aL 
  EHU01262.1  9 SLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALI 52
                699*******99***************************99996 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
      AAA_23  129 kiilnlilflgqer...feefelkdkkerleelekeleeledekkllekl.............eqekekekeleeleeeleeilkel 199 
                  ki++ + ++++  +   ++ +++ d+ e++e++e el+ l++e    e+              +       +++  ++++ ++++ l
  EHU01262.1 1183 KIQFFIAVYQHLRErirQDIIRTDDPVEAIEQMEIELNRLTEELTAREQTlaissrsvaniirK-------TIQREQNRIRQLNQGL 1262
                  3355555555554466666667799999999999999999999998888877777766544432.......5555555555555544 PP

>> DUF4238  Protein of unknown function (DUF4238)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       3.2   4.9e+03     131     155 ..     308     346 ..     288     404 .. 0.52
   2 !   17.9   2.2   1.2e-06    0.0018      55     154 ..     550     650 ..     509     683 .. 0.83
   3 ?   -2.9   2.8       2.5   3.7e+03      44      84 ..    1063    1102 ..    1027    1320 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
     DUF4238 131 kfekpldelldelkvildtkvdle..............e 155
                 ++ ++++el+++   ++d+++d++              +
  EHU01262.1 308 RHVEMARELAEHSGAENDLEIDYQaasdhlnlvqtamrQ 346
                 344444444444444444444444444443333222222 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.2e-06
     DUF4238  55 edpnhiEktlaklEskaakiirkilkegkstrtltreerkqlrkflfllkyRtprfr..eeydtedkeelesymrekkkfekpldelldelkvildtkv 151
                  +p+ +E +  +lE +++++   + + + ++r l r+e++qlr+ +++l  R p++   +e+ t+++e+  +    ++ +++ +++ll++ +    +  
  EHU01262.1 550 YEPDALEGLQRELEAQIEQLNSSVAD-AGEQRMLMRQELEQLRQRIATLTARAPHWLaaQEILTQLSEQTGQALTSSQDVTEYMQQLLERERETTVERD 647
                 567778888888**************.9999**************************998888899999999999999999999999888776666666 PP

     DUF4238 152 dle 154
                 +++
  EHU01262.1 648 EVA 650
                 666 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.5
     DUF4238   44 dmYtiknedsgedpnhiEktlaklEskaakiirkilkegks 84  
                   +Yt  +  + +++n++Ek+l   E ++ ++ +k+++  ++
  EHU01262.1 1063 ELYTALSH-NRARRNQLEKQLTFCEAEMDNLQKKLRQLERN 1102
                  45665555.57888888888888888888777777772222 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0027       4.1      18      44 ..      21      47 ..       7      61 .. 0.82
   2 ?    5.4   0.5    0.0072        11      44     196 ..    1184    1434 ..     832    1457 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0027
                EEEETTSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 18 vilpfsksftaivGpNGSGKsnlldAi 44
                 + ++++ +t + G NG+GKs  + A 
  EHU01262.1 21 RTFDLDELVTTLSGGNGAGKSTTMAAF 47
                567889999*************99985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0072
                  HHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
       SMC_N   44 ilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske..... 135 
                  i+F +    +++lr++  +d+i   +  +++++ e+e+      ++l+ +++ + is r + +   + +i++++ + +++++ l+++ + +      
  EHU01262.1 1184 IQFFIA--VYQHLRERIRQDIIRTDDPVEAIEQMEIELN--RLTEELTAREQTLAISSRSVANII-RKTIQREQNRIRQLNQGLQTVSFGQVrsvrl 1275
                  556666..4678999999999998777778888888874..555555566677777766666554.6678888888888888888888887788999 PP

                  ........................................................................................CS-HHHHHH CS
                  ........................................................................................xxxxxxxxx RF
       SMC_N  136 ........................................................................................lLSgGektL 144 
                                                                                                          +LS Ge   
  EHU01262.1 1276 nvnvrethamlldtlseeheqhqdlfnsnrltfsealaklyqrlnpqidmgqrtpqtigeelldyrnylemevevnrgsdgwlraesgALSTGEAIG 1372
                  9999999999999999999999999999999999*****************************************************99****9999 PP

                  HHHHHHHH.............HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE- CS
                  xxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  145 valaLlfA.............iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivis 196 
                  + +++l+               + ++p  l +lDe +a LD++ ++ + el ++ +  +Q+++ +
  EHU01262.1 1373 TGMSILVMvvqsweeesrrlrGKDISPCRLLFLDE-AARLDARSIATLFELCERLE--MQLVIAA 1434
                  99998877788999999987777788888999999.58999999999999988888..8877655 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.25   3.8e+02      58      84 ..     457     483 ..     442     491 .. 0.72
   2 ?   -0.2   0.3      0.56   8.3e+02      57      85 ..     564     592 ..     560     600 .. 0.85
   3 ?   -1.7   0.1       1.7   2.5e+03      29      80 ..     612     660 ..     606     666 .. 0.55
   4 ?   -1.8   0.3       1.8   2.7e+03      83     109 ..     841     867 ..     835     874 .. 0.73
   5 ?   -3.3   1.2         5   7.5e+03      39      78 ..     899     938 ..     888     956 .. 0.49
   6 ?    1.9   1.3      0.12   1.8e+02      51     102 ..     978    1029 ..     975    1044 .. 0.83
   7 ?   14.2   0.4   1.9e-05     0.028      61     112 ..    1063    1114 ..    1058    1117 .. 0.92
   8 ?    1.4   0.6      0.17   2.6e+02      33      87 ..    1214    1269 ..    1206    1296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.25
      Nsp1_C  58 kIskLysevleaeqeqnkidqeLeyie 84 
                 ++ +L +++  ae++ ++ +q L++++
  EHU01262.1 457 QLLRLEQKLSVAEAAHSQFEQALSLVT 483
                 455677777777777777777777766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
      Nsp1_C  57 ekIskLysevleaeqeqnkidqeLeyies 85 
                  +I++L+s+v +a ++   + qeLe + +
  EHU01262.1 564 AQIEQLNSSVADAGEQRMLMRQELEQLRQ 592
                 589***********999999999998765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.7
      Nsp1_C  29 teLeeqekeFeeqakkvneWDrvLvengekIskLysevleaeqeqnkidqeL 80 
                 t+L+eq+ +  + +++v+e  + L+e   + +       e+ + +++i+q++
  EHU01262.1 612 TQLSEQTGQALTSSQDVTEYMQQLLERERETTVE---RDEVAARKREIEQQI 660
                 5666666666666666666666666655544322...223333444555554 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.8
      Nsp1_C  83 iesqqdeLeslLdnyEkeleellskle 109
                 + + + eLe+ L++ E++ +++ ++  
  EHU01262.1 841 LGARRGELERALNQHESNNQQQRQQFD 867
                 566778999999999999888876655 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 5
      Nsp1_C  39 eeqakkvneWDrvLvengekIskLysevleaeqeqnkidq 78 
                 +eq ++ +e  r L + g k++kL   +   +++ ++ dq
  EHU01262.1 899 REQVEDAQEAARFLHQHGAKLAKLEPMLAVLQSDPEQHDQ 938
                 5555555555566666666666665544444443333333 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.12
      Nsp1_C   51 vLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkele 102 
                  +L  n +   kL++ +++ae+e ++  ++L   +sq ++ +++L+++ +  +
  EHU01262.1  978 MLGGNTDLSDKLRQRLEQAEAERSRCRERLRAHQSQLTQYSQVLASLKSAYD 1029
                  56677788889****************************9999999877655 PP

  == domain 7  score: 14.2 bits;  conditional E-value: 1.9e-05
      Nsp1_C   61 kLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEkeleellsklesqk 112 
                  +Ly+++ + ++  n+++++L++ e++ d+L++ L ++E++ +++ ++++s+k
  EHU01262.1 1063 ELYTALSHNRARRNQLEKQLTFCEAEMDNLQKKLRQLERNYHQIREQVVSAK 1114
                  79999999*********************************99999888776 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.17
      Nsp1_C   33 eqekeFeeqakkvneWDrvLvengekIskLysevleaeqeq.nkidqeLeyiesqq 87  
                  + e e ++ ++++++ +++L  ++  ++++ +++++ eq+  ++++q L+ ++  q
  EHU01262.1 1214 QMEIELNRLTEELTAREQTLAISSRSVANIIRKTIQREQNRiRQLNQGLQTVSFGQ 1269
                  55667788889999999999999999999999999998876367999999998765 PP

>> DUF3713  Protein of unknown function (DUF3713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.51      15      84 ..     963    1033 ..     956    1044 .. 0.83
   2 ?   -1.7   0.1       2.4   3.5e+03      16      49 ..    1228    1263 ..    1220    1282 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
     DUF3713   15 vkkeetttskeksvnklKtkdik.vkklkdkkekvetkakslvekLkvttapsstySqvv.llkvkndnkps 84  
                  v +  +  s + s + l  ++++ ++kl++ +e+ e + +   e L++      +ySqv  +lk+ +d k +
  EHU01262.1  963 VVQRRAHFSYDDSASML-GGNTDlSDKLRQRLEQAEAERSRCRERLRAHQSQLTQYSQVLaSLKSAYDAKRD 1033
                  56666777888888988.666666**********************************96479999987655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
     DUF3713   16 kkeetttskeksvnklKtkdik..vkklkdkkekve 49  
                    e+t   +  sv+++  k+i+   +++++  +  +
  EHU01262.1 1228 AREQTLAISSRSVANIIRKTIQreQNRIRQLNQGLQ 1263
                  467887778888888877777766888888766555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00021      0.31      13      38 ..      29      54 ..      22      75 .. 0.83
   2 ?   -0.9   0.1       1.5   2.2e+03      52     126 ..     240     319 ..     211     321 .. 0.63
   3 ?   -1.5   0.7       2.2   3.3e+03      38      93 ..     346     407 ..     330     476 .. 0.63
   4 ?   -0.4   2.0         1   1.5e+03      76      96 ..     610     639 ..     480     684 .. 0.62
   5 ?    2.8   0.4       0.1   1.5e+02      65     127 ..    1213    1283 ..    1178    1291 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
                EEEEEESTTSSHHHHHHHHTTSS--S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpt 38
                ++ + G nGaGKSt ++++   l p+
  EHU01262.1 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54
                56799*************99988876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
                 B-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpeltvren..........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkk 126
                 +e + + + i+v + +  lf++l + e           +    +++ + +l+      + + +s ++L   q + v++ar l+++
  EHU01262.1 240 RENRMTLEAIRVTQSDRDLFKHL-ISEAtsyvsadymrH----ANERRIHLDSALQLRNELFTSRKQLASEQYRHVEMARELAEH 319
                 45556666777778888888888.666667766633333....444444444333444444466799999999999999988775 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.2
                 SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx RF
    ABC_tran  38 teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklg 93 
                 ++++i+  + d+++  + +l+++++v+ +  ++++e ++r +       e +++++++ + l+
  EHU01262.1 346 QQEKITRYDSDIED-LTLRLEEQSEVVAEAREIQEENEARAEaaelevdELKSQLADFQQALD 407
                 45555555555555.344555556666666666666555555444444433333333333333 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1
                 HHHH.........HHHTCHHHHHHHSTTGG CS
                 xxxx.........xxxxxxxxxxxxxxxxx RF
    ABC_tran  76 vren.........esdeeiekalsklglke 96 
                 + ++         +s++++++++++l   e
  EHU01262.1 610 ILTQlseqtgqalTSSQDVTEYMQQLLERE 639
                 332233334444433333333333332222 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.1
                  -SS....--S-TTSBHHHH....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTS CS
                  xxx....xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   65 pqe....pqlfpeltvren....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkp 127 
                  +q     ++l +elt+re+     s++ ++ ++++++ ++ + + ++++ +++S Gq + v l   + +  
  EHU01262.1 1213 EQMeielNRLTEELTAREQtlaiSSRSVANIIRKTIQREQNRIRQLNQGLQTVSFGQVRSVRLNVNVRETH 1283
                  44433356788888888889984444446666666666666667776666*******99999866554444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00024      0.36      18      43 ..      22      47 ..       6      52 .. 0.83
   2 ?   -1.7   0.6       1.2   1.8e+03      67     113 ..     350     397 ..     233     478 .. 0.60
   3 ?    2.3   1.0     0.073   1.1e+02     209     311 ..    1178    1279 ..    1057    1301 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00024
      AAA_15 18 eidlseeltvliGkNnsGKSsileal 43
                + dl+e +t+l G N++GKS+ + a+
  EHU01262.1 22 TFDLDELVTTLSGGNGAGKSTTMAAF 47
                56899*9***************9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
      AAA_15  67 ifeniseskdikIdvefaek.ekakeyektlkskekkkadlllkkkes 113
                 i++++s   d+ +++e++++   +  +++++++ +++ a+l++++++s
  EHU01262.1 350 ITRYDSDIEDLTLRLEEQSEvVAEAREIQEENEARAEAAELEVDELKS 397
                 222222222222222221112222222222222222222222222222 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.073
      AAA_15  209 edsekkssllgklkekileealqekl.eeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneeieikddeelplnknGsGvqrl 304 
                  ++ e k  +++++++ + e + q+   +++  e++++++ +l+ + ++l+++++   +++ +  + +   ++ ++++    + ++ l  +++G+ r 
  EHU01262.1 1178 KRPERKIQFFIAVYQHLRERIRQDIIrTDDPVEAIEQMEIELNRLTEELTAREQTLAISSRSVANIIRKTIQREQNRI--RQLNQGLQTVSFGQVRS 1272
                  566778888899999998888777779777888888888888888888888877444444444443333444444444..88889999999999988 PP

      AAA_15  305 lllilli 311 
                  + l++  
  EHU01262.1 1273 VRLNVNV 1279
                  8877655 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.4   0.00039      0.59     125     244 ..    1029    1153 ..     984    1165 .. 0.73
   2 ?   -0.5   1.7      0.27     4e+02      60     126 ..    1202    1267 ..    1182    1296 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00039
      HlyD_2  125 ni.ekdiekldreInvlekdikesiknedikkieelKeelnalldkKkllygskslsgkdleqlkkkkkeienklesskevikakesG...vlsysi 217 
                  +  ++  ++l++e++    +   s+++ +  + +el   l  +  +++ l+++  + ++++++l+kk +++e ++++  e + +++ G   vl +  
  EHU01262.1 1029 DAkRDMLKELQQEMQDIGVQADASAEERARIRRDELYTALSHNRARRNQLEKQLTFCEAEMDNLQKKLRQLERNYHQIREQVVSAKAGwcmVLRLVK 1125
                  331233344444444444444455555555666789999999999******************************************9666666666 PP

      HlyD_2  218 D.gyeeklsvdnikklkvddlksienki 244 
                  D g e  l   ++  l+ d+l+s+++k 
  EHU01262.1 1126 DnGVERRLHRRELAYLSADELRSMSDKA 1153
                  659********************99985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.27
      HlyD_2   60 iirdekviksnaegivkyfvkeGdkvkkgkkvaeiqkseadeklkekletlnerikeienneaieni 126 
                  iir +  +++ ++ +++      + +   ++ + i++ ++ + +++++++ ++ri +++++ +  ++
  EHU01262.1 1202 IIRTDDPVEAIEQMEIELNRLT-EELTAREQTLAISSRSVANIIRKTIQREQNRIRQLNQGLQTVSF 1267
                  6677777777777776655444.445566677789999999***************99999866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2206  (0.123041); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        68  (0.00379274); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 2.03u 0.39s 00:00:02.42 Elapsed: 00:00:00.63
# Mc/sec: 7123.27
//
Query:       EHU01263.1  [L=604]
Description: putative carboxypeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-29  102.4   0.0    4.9e-29  101.6   0.0    1.4  1  YkuD          L,D-transpeptidase catalytic domain
    3.1e-08   33.7   2.4    3.4e-07   30.4   0.1    3.0  3  PG_binding_1  Putative peptidoglycan binding domain
  ------ inclusion threshold ------
      0.035   14.3   0.1      0.078   13.3   0.1    1.6  1  PG_binding_3  Predicted Peptidoglycan domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   8.3e-33   4.9e-29       3     139 ..     364     531 ..     362     559 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 8.3e-33
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT................ CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv................ 85 
                  i+v++++ + l +y+ng+ vl+ +v+vG   ++dr+TPl+++ ++++v np wnvp +  r++i+pk ++dp+yl k+++ +                
  EHU01263.1 364 GIMVNIPN-YSLNYYNNGTRVLTSRVIVG---RPDRKTPLMRSALNNVVLNPPWNVPTTLVRQDIIPKVKQDPTYLYKHGYTLlsglsadaevidptmi 458
                 59******.999*****************...67***********************************************99**************** PP

                 ......................CECCCCEEE-STTS-EEEE.ETCSS...CTHHC..BSSSEEE-HHHHHHHHHHHH CS
        YkuD  86 ......................algkvkfvfpngsgiyiHgtgapdlfergkgarr.ShGCirlseedakelyelvl 139
                                       +lg++kf++p++++iy+H+t++ +lf+r+   r+ S+GC+r+  ++a el+  +l
  EHU01263.1 459 dwsmvsassfpyrirqapgqtnSLGRFKFNMPSSDAIYLHDTPNHNLFQRD--IRAlSSGCVRV--NKASELAGILL 531
                 ************************************************993..4448*******..99999997765 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.9     0.094   5.6e+02      32      40 ..      88      96 ..      87      98 .. 0.86
   2 ?   -2.0   0.0      0.74   4.4e+03       3      19 ..     227     243 ..     226     255 .. 0.75
   3 !   30.4   0.1   5.7e-11   3.4e-07      24      57 .]     303     336 ..     290     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.094
                  HHHHHHHHH CS
  PG_binding_1 32 eaVkefQqf 40
                  +aV++fQq+
    EHU01263.1 88 DAVQKFQQQ 96
                  79*****97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.74
                   HHHHHHHHHHHHTT--. CS
  PG_binding_1   3 edvkelqryLsrlGyls 19 
                   +dv +l++ L+r G ls
    EHU01263.1 227 DDVPALREILRRSGMLS 243
                   79999999999999873 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 5.7e-11
                   SB--HHHHHHHHHHHHHTTST-SSSBSHHHHHHH CS
  PG_binding_1  24 gtfgpateeaVkefQqffgLpvtGildpaTlaal 57 
                    ++++ +++aVk+fQq +gL ++G ++p T++ l
    EHU01263.1 303 NVYDDNLVAAVKRFQQWQGLDADGAIGPRTREWL 336
                   579****************************986 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05     0.078       2      47 ..     312     350 ..     311     359 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                   HHHHHHHHHT.....S---S---HHHHHHH...HHS-HHHHHHHHH CS
  PG_binding_3   2 aivilQriLgklgydvkvDGiiGpkTlaAvearasadedaLlkain 47 
                   a++ +Q++ g     + +DG+iGp+T++ ++   s+++ a l a+n
    EHU01263.1 312 AVKRFQQWQG-----LDADGAIGPRTREWLN--VSPQQRAALLALN 350
                   78889****9.....************9994..3333333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4387.25
//
Query:       EHU01264.1  [L=183]
Description: uncharacterized DUF882 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-61  204.4   0.0    8.4e-61  204.1   0.0    1.0  1  Peptidase_M15_2  Bacterial protein of unknown function (DUF88
    6.1e-12   45.6   0.0    7.9e-12   45.3   0.0    1.2  1  Peptidase_M15_3  Peptidase M15


Domain annotation for each model (and alignments):
>> Peptidase_M15_2  Bacterial protein of unknown function (DUF882)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   0.0   9.4e-65   8.4e-61       3     153 .]      34     182 ..      32     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.1 bits;  conditional E-value: 9.4e-65
  Peptidase_M15_2   3 aaetrslklknlhtgekaeivykengkylsealkkldkllrdfrrnevtrmdkrlfdlllqvkrklgskeeiqvvsgyrsPatnallrsrskgv 96 
                      ++ +r l+l+nlhtge+++++++++++y++++l++l++++rd+r n+++ +d++lfd+l+++++ l++++ +q++sgyr+ atn++lr+   gv
       EHU01264.1  34 TSRPRVLTLNNLHTGETLKTEFFNGKSYDKSELSRLNHFFRDYRANKIKSIDPHLFDQLYRLQTLLETRKPVQLISGYRTLATNNMLRESGPGV 127
                      6789****************************************************************************************** PP

  Peptidase_M15_2  97 akksyhmlGkaidfrldgvklkklreialklqvGGvGyyPksgspfvhvdvGpvrkW 153
                      ak+syh++G+a+df+++g++l+++r++alk+++GGvGyyP s+  fvh+d+Gpvr+W
       EHU01264.1 128 AKHSYHTKGQAMDFHIEGISLANVRKAALKMRAGGVGYYPSSN--FVHIDTGPVRHW 182
                      *****************************************99..************ PP

>> Peptidase_M15_3  Peptidase M15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   8.8e-16   7.9e-12      24     111 .]      81     175 ..      59     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 8.8e-16
  Peptidase_M15_3  24 taka.vqkllaklealreklgk..pivvtSgyRseevnrkv.....GGatdsqHltgkAaDitvsgknkeelaeilraaaaegvgikrhnsfvH 109
                      + k+  ++l ++l  l++ l+   p+ + SgyR+ ++n        G a++s+H++g+A+D+ + g + +++++++ + +a+gvg++ +++fvH
       EHU01264.1  81 I-KSiDPHLFDQLYRLQTLLETrkPVQLISGYRTLATNNMLresgpGVAKHSYHTKGQAMDFHIEGISLANVRKAALKMRAGGVGYYPSSNFVH 173
                      3.3336788889999998888778**************75434333569********************************************* PP

  Peptidase_M15_3 110 ld 111
                      +d
       EHU01264.1 174 ID 175
                      98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1341.12
//
Query:       EHU01265.1  [L=209]
Description: putative metal-binding enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-28   98.2   1.8    6.8e-28   98.0   1.8    1.0  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0002   20.9   0.1    0.00028   20.5   0.1    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   1.8   7.6e-32   6.8e-28       3     197 .]      10     192 ..       8     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 7.6e-32
                  CCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHT CS
  Lactamase_B   3 pdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglll 98 
                   + +n+ +i+  +  +  ++D+G+++++ r+      l+  ++ +  ++lTH+HlDH+G++++l+  +++p +  ++ ++ +++  + ++++++    
   EHU01265.1  10 AFAQNCSVIWcdTTRESAIVDPGGDADTIRQT-----LEQLDLTPGQILLTHGHLDHVGAAAELAACWNIPLVGPHKQDAFWLEALPTQSQMFGL--- 99 
                  6789*******999*****************9.....7*************************************************99888886... PP

                  TCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE. CS
  Lactamase_B  99 agvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp. 195
                  ++  +  pd+++ee+d+   g + l+v ++pgh++gh+v++++  ++l++GD++++g  gr+d++ ++++ + ++++ k l        l ++v ++ 
   EHU01265.1 100 EYCAPLTPDRWLEEGDTVQVGQVNLEVLHCPGHTPGHIVFFDRQWRLLVSGDVIFNGGVGRTDFPQGNHQHLIDAIKNKVL-------PLGDDVTFLp 190
                  8999************************************************************77777777777777777.......8888888887 PP

                  SS CS
  Lactamase_B 196 gH 197
                  gH
   EHU01265.1 191 GH 192
                  88 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.1e-08   0.00028       5     105 ..      29     126 ..      27     154 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.1e-08
                    ES--TT...HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHH....HCCTTCGHHHCHTT.TTEEEEEE-T CS
  Lactamase_B_2   5 iDagpd...lrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvla....vleanfvylaleee.pavnvheldw 92 
                    +D+g d   +rq  l +l       +l p + +llth+H DH+  +  l+++++  +pl++p +  a     l ++++ + le   p ++ + l+ 
     EHU01265.1  29 VDPGGDadtIRQT-LEQL-------DLTPGQ-ILLTHGHLDHVGAAAELAACWN--IPLVGPHKQDAfwleALPTQSQMFGLEYCaPLTPDRWLEE 113
                    7888886655555.5555.......677888.***********99******998..9999885443321114444443333333355555555666 PP

                    TSEEEECSTTEEE CS
  Lactamase_B_2  93 gesfelgdgglei 105
                    g+++++g+++le+
     EHU01265.1 114 GDTVQVGQVNLEV 126
                    6666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1789.09
//
Query:       EHU01266.1  [L=396]
Description: aspartate transaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-90  301.9   0.0    7.5e-90  301.7   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.7   0.0   4.2e-94   7.5e-90       2     363 .]      27     392 ..      26     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: 301.7 bits;  conditional E-value: 4.2e-94
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgd 94 
                    ++inLg++ y++++gk p+l++v+kae+  +l+++t ++y+ idglp++ +++ ++l+   +  ++  r ++ ++ +G+gal++a++fl++    +
     EHU01266.1  27 NKINLGIGVYKDETGKtPVLTSVKKAEQY-LLENETSKNYLSIDGLPDFAHCTQELLFgkGNALISAGRVRSAQTPGGTGALRVAADFLATQTSVK 121
                    89***************************.****************************97777999****************************** PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    +++v++p+++++kn+++++g+ev +y++y++ + +ld++++++ lk  ++g++   v+++ ++hNPtG ++t e++++l++l k++++l+++D+aY
     EHU01266.1 122 RVWVSNPSWPNHKNVFNAAGLEVCEYSYYDAVNHTLDFDSMLASLKAVKAGDV---VLFHGCCHNPTGIDPTAEQWQQLAALSKANGWLPLFDFAY 214
                    *****************************************************...**************************************** PP

                    TTCBSSSS.HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...H CS
  Aminotran_1_2 191 agfvfgsl.davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...e 273
                    +gf+ g + da+ +r++++ + +l++++s+sK+fGl++eRvG+i+ +a          sq++   r+ +s  +s+++a+va++l ++ l+     e
     EHU01266.1 215 QGFARGLEeDAAGLRLFAASHQELIVASSYSKNFGLYNERVGAITLVAsdaatadTAFSQVKYTIRANYSnpPSHGAAVVATILGNDALRTIwqqE 310
                    ******77999999********************************8889***********************************9999876788* PP

                    HHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHH..HHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskk..LleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    l++mrqr+q++r+ +++ Lae+    +++++++q+gmf++++l++       ++  L+ee+gvy +         ++R++vAg+t++++  l+ea+
     EHU01266.1 311 LSDMRQRIQRMRQLFVNTLAEKgaqqDFSFIIKQNGMFSFSGLTKD------QVirLREEFGVYAVN--------SGRVNVAGMTPDNMSALCEAI 392
                    **********************************************......8888***********........9******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2842.75
//
Query:       EHU01267.1  [L=392]
Description: outer membrane porin F [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.9e-134  446.2  26.9   1.1e-133  445.9  26.9    1.1  1  Porin_1   Gram-negative porin
    9.7e-15   55.1  48.8    3.2e-11   43.5  49.4    2.0  2  Porin_4   Gram-negative porin


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.9  26.9  1.2e-137  1.1e-133       1     340 []      28     392 .]      28     392 .] 0.96

  Alignments for each domain:
  == domain 1  score: 445.9 bits;  conditional E-value: 1.2e-137
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTC..EEEEEEEEEEETTTEEEEEEEEE-TTHHHH CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqs..ktrlaFaGLkfgevGsldyGrnygvvydve 97 
                 Kdgnkldlygkv+++h+fsd++ +dgd+ty r+GfKGet+indq+tgygqwEy++++n++eg++aqs  ktrl+FaGLkfg++Gs+dyGrnygvvyd+ 
  EHU01267.1  28 KDGNKLDLYGKVDARHQFSDNSDDDGDQTYIRFGFKGETKINDQMTGYGQWEYNIQGNNSEGSDAQSgnKTRLGFAGLKFGDAGSIDYGRNYGVVYDAI 126
                 9*************************************************************976654499**************************** PP

                 CTTTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS....SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CHH CS
     Porin_1  98 awtdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnnrnlkksngdgygvslsYeveGfalsvagayarsdrtakq 196
                  wtd+lp fggd+  ++dnfm++r+ g++tYrnt+FfGlvdg nfalqyqgkne++   nr+ ++ ngdg+gvs+sY     +++++gay++sdrt++q
  EHU01267.1 127 GWTDMLPVFGGDSG-NSDNFMNGRSGGLLTYRNTNFFGLVDGWNFALQYQGKNENS---NRSDRRANGDGWGVSTSYTSP-IGVGIVGAYSSSDRTNSQ 220
                 *************5.**************************************995...8888***************99.89**************** PP

                 C..................TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEE...................EEEEESEEEEEEEEEEE-BTT CS
     Porin_1 197 klelk............seakllgngkkaevwalglkYdanniylaaaYaetrnatlvg...................asgianktqnlevvaqyqfdf 264
                 ++ ++            +  + +g gk+ae+wa++lkYdanniylaa+Y+e+rna +++                     g ank+q +e+vaqyqfdf
  EHU01267.1 221 AAGGQttysnngsttttTDVTGQGAGKHAESWATALKYDANNIYLAAMYGEMRNAAPISssstgnfianngqtftnasFAGYANKAQIIELVAQYQFDF 319
                 *98889999***9997766677899*********************************99**************99877899***************** PP

                 SEEEEEEEEEEEEECETTSTCCEEEEEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSCCTSSTSC-EEEEEEEEEE CS
     Porin_1 265 GlrPsiaYvqskgkdlegkkgdndlvkyvdvGatYyFnKnmsayVdykinlldkdddkelgistddivavglvyqF 340
                 GlrPs+aYvqsk+kd+e+ +gd+dl+ky+dvGatYyFnKnm +yVdykin+ldk++   lgi +dd+v++g+vyqF
  EHU01267.1 320 GLRPSLAYVQSKAKDIEN-IGDADLYKYFDVGATYYFNKNMATYVDYKINQLDKNN--PLGIPNDDVVGLGVVYQF 392
                 ******************.*************************************..79***************9 PP

>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5  49.4   3.6e-15   3.2e-11       4     304 ..      13     365 ..       7     366 .. 0.69
   2 !   14.3   4.3     3e-06     0.026     171     261 ..     294     392 .]     281     392 .] 0.80

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 3.6e-15
     Porin_4   4 alaaaAgaAaAqs.......sVtlyGsidagvayvdgsatgssadgatgfdsgsrigftgsedldlGlglkasfele....agdngagtsg..arqayv 89 
                 al +aAgaA+A++       +++lyG +da  + +d+s     +d  +g ++  r+gf+g +++++ ++   ++e +    ++++++++sg   r  ++
  EHU01267.1  13 AL-LAAGAANAAEvynkdgnKLDLYGKVDARHQFSDNS-----DD--DGDQTYIRFGFKGETKINDQMTGYGQWEYNiqgnNSEGSDAQSGnkTRLGFA 103
                 23.56****99999********************9953.....23..2344557************9998888888865432223333333559999** PP

     Porin_4  90 glsg.gfGkvtlGrqdgafdeagvdlafesgsladtgtalsgvsgsag.fdsrdsnsiiyyspk.....fgGftagasyafgeddntnglagsvagdsd 181
                 gl+  + G++++Gr++g+ ++a +        ++d+ + ++g sg++  f +++s++++ y+++      +G  ++++y+ g ++n+n         + 
  EHU01267.1 104 GLKFgDAGSIDYGRNYGVVYDAIG--------WTDMLPVFGGDSGNSDnFMNGRSGGLLTYRNTnffglVDGWNFALQYQ-GKNENSN-----RSDRRA 188
                 ***99*************999987........5555555555555553134888888888888888666779*******7.5555554.....233445 PP

     Porin_4 182 dndafglgagya..fggvglavaaaysqgdneadadldawglgasvsl.ggfklgasyadaendaaaaaadadlygvgasytvgaltvgaaygnyddag 277
                 + d++g++ +y+  +   g+ +  ays++d ++    +  ++g++ ++ ++   g + +++++++++a+  a+ ++  ++y+++++ ++a yg++++a+
  EHU01267.1 189 NGDGWGVSTSYTspI---GVGIVGAYSSSDRTN----S-QAAGGQTTYsNN---GSTTTTTDVTGQGAGKHAESWATALKYDANNIYLAAMYGEMRNAA 276
                 789999999999433...466667777555555....2.334566666222...222233445555566777777777777777777777777777723 PP

     Porin_4 278 ..............................................................andadatsyglgatYnLskrtdlyaey 304
                                                                               ++ +  + + +gatY ++k+++ y+ y
  EHU01267.1 277 pisssstgnfianngqtftnasfagyankaqiielvaqyqfdfglrpslayvqskakdieniGDADLYKYFDVGATYYFNKNMATYVDY 365
                 455555566677777777777777777777777777777777777777777777777777755666667779**************999 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3e-06
     Porin_4 171 glagsvagdsddndafglgagyafggvglavaaaysqgdneada......dldawglgasvsl.ggfklgasya..daendaaaaaadadlygvgasyt 260
                  +++s ag ++++++ +l a y+f   gl  ++ay+q+++++ +       +++  +ga++ + ++++ +++y+  + +++++ +  ++d++g+g+ y+
  EHU01267.1 294 FTNASFAGYANKAQIIELVAQYQFD-FGLRPSLAYVQSKAKDIEnigdadLYKYFDVGATYYFnKNMATYVDYKinQLDKNNPLGIPNDDVVGLGVVYQ 391
                 3456677777899999999999974.7899999999666666556666788999999999999999999999998899999999999999999999997 PP

     Porin_4 261 v 261
                 +
  EHU01267.1 392 F 392
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2746.67
//
Query:       EHU01268.1  [L=466]
Description: asparaginyl tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-82  276.2   0.0    3.7e-82  275.9   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.5e-12   47.3   0.5    5.2e-12   45.6   0.2    2.0  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.031   13.8   0.1        1.2    8.6   0.0    2.4  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
       0.14   11.4   0.0       0.29   10.4   0.0    1.4  1  tRNA-synt_His    Histidyl-tRNA synthetase


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9   0.0   8.2e-86   3.7e-82       3     313 ..     119     460 ..     117     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 8.2e-86
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.T.............EEE....-E-S-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx....xxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekek.............eff....aLtqspqlyl 83 
                  e++++  +l++rt+ + +v r+r+t+++a++++++eng++ + tP+++ sdte++++ F v +   e+             +ff    +Lt+s+ql  
   EHU01268.1 119 EYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFHENGYFWVSTPLITASDTEGAGEMFRVSTLDLENlprddqgkvdfseDFFgkeaFLTVSGQLNG 216
                  6678899******************************************************77766444445566787777999************** PP

                  HHHHHCTHSEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.......EE-SSS.-EEEEH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxx.xxxxxx RF
  tRNA-synt_2  84 ellivagidrvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns.......kdlkkp.fkrlty 173
                  e++++a ++++++++++FRaE+s+t+rhlaEF+++e e++f++ +d  +++e ++k+++k vle+ a+d+ f  +r         + + ++ f +++y
   EHU01268.1 217 ETYASA-LSKIYTFGPTFRAENSNTSRHLAEFWMLEPEIAFASLDDAADLAEAMLKYVFKAVLEERADDMAFFAERVDndaiarlERFVTTdFAQVDY 313
                  ******.*****************************************************************99998899999995555555****** PP

                  HHHHHHHHTS..........-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTE.EEEEEEEB--SHHHHHHHHHHC CS
                  xxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 174 keaieklnei..........gkdldkaderalvkkeknepvfvtdfPaelkpFyarkeeddkkltesyDllingv.ElvgGslRiedpeeleeklksk 260
                  ++a+e+l +           g dl++++er+l +k+ + pv v ++P+ +k Fy+r +ed  k+++++D+l +g+ E++gGs+R+e+ ++l ++l++ 
   EHU01268.1 314 TDAVEILMNCgqtfensvswGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRLNED-GKTVAAMDVLAPGIgEIIGGSQREERLDVLDARLEEM 410
                  ******9988**************************************************.8************************************ PP

                  CHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 261 gldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  gl+   +e + wy ++++yG++ph+G+glG++Rl+++++g +++rdvi+FP++
   EHU01268.1 411 GLK---KEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRT 460
                  ***...*********************************************97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.2   1.2e-15   5.2e-12       1      75 [.      20      99 ..      20     100 .. 0.93
   2 ?   -1.3   0.0      0.51   2.3e+03      18      54 ..     254     300 ..     251     319 .. 0.70

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.2e-15
                     EEEEEEEEEEEEEEETTEEEEEEEETT..EEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS..SEEEEEEEEEE CS
  tRNA_anti-codon  1 VtvaGrvtsisdrsggkvifidlrDgt..griqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg..elelkveeiel 75
                     Vtv+G+v++++  s+++++fi + Dg+    +q+v+++  +++++   +l+ G+ v vtG+v ++pg+   +e++++++e+
       EHU01268.1 20 VTVRGWVRTRR-DSKAGLSFIAVYDGScfNPVQAVVNNslNNYQDEVLRLTTGCSVIVTGTVVASPGQgqAFEIQATKLEV 99
                     9*********9.***************999********8888888888899**************666669********98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.51
                      EEEEEEEETTEEEEEEEET..........HHHHHHHTTS-TTSEEEE CS
  tRNA_anti-codon  18 vifidlrDgtgriqvvlfr..........eeatklaenlkeGdvvrv 54 
                      ++f+ l+D  +  +++l            +++  +ae+++++ + r 
       EHU01268.1 254 IAFASLDDAADLAEAMLKYvfkavleeraDDMAFFAERVDNDAIARL 300
                      78888999887666666665555777777777777777777766665 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.018        81     103     160 ..     225     281 ..     216     312 .. 0.79
   2 ?    8.6   0.0   0.00026       1.2     209     234 ..     429     454 ..     422     457 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.018
                   EEEEEEEEEBSST.-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrda.vDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvr 160
                   ki ++g +fR ++   ++hlaeF  +e  ++    sl+d   ++e++lk++f a ++ r
    EHU01268.1 225 KIYTFGPTFRAENsNTSRHLAEFWMLEPEIAF--ASLDDAADLAEAMLKYVFKAVLEER 281
                   7889999*****96778899999888866554..4566667777777777776665555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00026
                   SEEEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 209 vsgfafGlGveRlamlkygieDiRel 234
                   v+  +fGlG+eRl    +g++++R++
    EHU01268.1 429 VPHSGFGLGFERLIAYVTGVQNVRDV 454
                   56678*******************97 PP

>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.4e-05      0.29       8      43 ..     136     171 ..     131     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.4e-05
                    CHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHH CS
  tRNA-synt_His   8 eeaekieelrrrlldlfeswGYelVspPllEyldsl 43 
                    + a+ +++l+++l+++f+++GY  Vs+Pl+  +d+ 
     EHU01268.1 136 AVARVRHTLAQALHRFFHENGYFWVSTPLITASDTE 171
                    6689999***********************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3441.86
//
Query:       EHU01269.1  [L=401]
Description: nicotinate phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-80  267.6   0.0    1.3e-79  267.3   0.0    1.1  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    1.2e-35  122.7   0.1    2.4e-35  121.7   0.1    1.5  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.3   0.0   1.4e-83   1.3e-79       1     240 [.     169     395 ..     169     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 267.3 bits;  conditional E-value: 1.4e-83
                 GSEEE-TSTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCHIIEEECHCCTH CS
    NAPRTase   1 fklhDFGtRrrsslesqeivvkalkkahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiekgnlgiaLtdlvlt 99 
                 f+l+DFGtRrr+s+ +qe +v++lk+    +++Gt+n+++a+++++++++t+ahe+++++q++s+    l+++q++al++w+ +++++lgiaLtd++ +
  EHU01269.1 169 FRLMDFGTRRRYSRSVQEAIVSTLKQ-DFPWLMGTSNYDLARRLELTPVGTQAHEWFQAFQQISP---VLANSQRAALQAWLDEYDDKLGIALTDCIAM 263
                 89**********************99.889***********************************...******************************* PP

                 HHHHCCS-CC.HHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCEEEE CS
    NAPRTase 100 daflkdfrle.akaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavkasa 197
                 dafl+df    a +y+g+R+DSGdpve++ek++ahy+++ ++++++k+l+fsD+l+++k++++++++ + +  ++FGiGt+lt+d++         +++
  EHU01269.1 264 DAFLRDFGPVfARRYQGLRHDSGDPVEWGEKALAHYQQL-GIDPQSKTLVFSDNLNLDKALALYRHFGQ-RTHVVFGIGTRLTCDIPG--------VTP 352
                 ********99*****************************.*****************************.******************........*** PP

                 EEEEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHCTTT CS
    NAPRTase 198 lniviklvevnkdpvakisdrskkgrlgdkefvkllrtvfkng 240
                 lniviklv++n++pvak+sd+++k++++dk+fv+ lr+ f+ +
  EHU01269.1 353 LNIVIKLVQCNGKPVAKLSDSPGKTICQDKAFVRALRKAFDLP 395
                 ****************************************976 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.1   2.6e-39   2.4e-35       1     125 []      13     130 ..      13     130 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 2.6e-39
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpsevaveeeevvfp 99 
                 LdtD Ykl+m+qavf+ + dv+v  e+ +R+++   +  ++++++++i+ +++l +t+ e+++L+  lp+f +d+l++Lr+fr++p++v v++     +
  EHU01269.1  13 LDTDAYKLHMQQAVFHRYYDVTVAAEFRCRSDE--LLGFYADEIRAAINAMQTLALTDAEYAWLS-DLPFFADDYLNWLRNFRYDPQQVDVQNH----N 104
                 8********************************..9999999**********************9.*************************998....8 PP

  NAPRTase_N 100 gepeirveGpwieaillEtplLaivn 125
                 g++ ir++Gpw e+i++E+plLa+++
  EHU01269.1 105 GKLAIRIQGPWREVIMWEVPLLALIS 130
                 ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3060.24
//
Query:       EHU01270.1  [L=871]
Description: aminopeptidase N [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.4e-119  397.3  11.1     8e-119  396.7  11.1    1.3  1  DUF3458_C       Domain of unknown function (DUF3458_C) ARM re
    3.4e-55  187.0   0.9    6.3e-55  186.1   0.9    1.5  1  Peptidase_M1    Peptidase family M1 domain
    2.1e-33  114.6   0.4    6.3e-33  113.1   0.2    2.0  2  DUF3458         Domain of unknown function (DUF3458) Ig-like 
    1.3e-14   54.8   0.0    2.4e-14   53.9   0.0    1.5  1  Peptidase_M1_N  Peptidase M1 N-terminal domain
     0.0024   17.8   0.1      0.013   15.5   0.0    2.2  2  Ovate           Transcriptional repressor, ovate
  ------ inclusion threshold ------
      0.075   13.3   0.3        2.6    8.4   0.0    3.2  3  DUF2063         Putative DNA-binding domain


Domain annotation for each model (and alignments):
>> DUF3458_C  Domain of unknown function (DUF3458_C) ARM repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.7  11.1  2.7e-122    8e-119       1     319 []     548     870 ..     548     870 .. 0.98

  Alignments for each domain:
  == domain 1  score: 396.7 bits;  conditional E-value: 2.7e-122
                 HHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHH.....TT----HHHHHHHHHHHT-TTS-HHHHHHHTS---HHHHCTT-SSB-HHHHHHHHHHHHH CS
   DUF3458_C   1 deelafLlahdsDafnRweagqrLalrvllalva.....eeaalsealvealravLedealdpalkaeaLtlPseaelaeqlkevdpdaihaarealrk 94 
                 d++l+fL++h+s++f+Rw+a+q+L+  +l  +va     ++++l+ ++++a+r+vL d++ dpal a++LtlPse+e+ae ++ +dp+ai+ +real +
  EHU01270.1 548 DAQLTFLMRHASNDFSRWDAAQSLLATYLRLNVArhqqgQHLSLPLHVADAFRTVLLDADSDPALTALILTLPSENEIAELFEIIDPQAIALVREALVR 646
                 689******************************666778999********************************************************* PP

                 HHHHHTHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHSSSHHHHHHHHHHHTTSSSHHHHHHHHHHHHHCTTSHH CS
   DUF3458_C  95 alaealedellalyealaaegayspdaaaagrRaLknlaLsylaaaddeeaaelavaqfkaadnmTdrlaALaalvnsdlpereealadfyqrwkdeal 193
                 +la++l+de+ a+y+a+++ ++y++d+a++g+R+Lkn++L yla  d + a +l++aq+++a+nmTd+laAL+a+v ++lp+r+++lad+++rw+ + l
  EHU01270.1 647 TLARELADEFFAVYNANQQ-ADYHVDHAETGKRSLKNICLYYLAFGDMDLADKLVQAQYQRANNMTDSLAALSAAVAAQLPCRDALLADYDDRWHRDGL 744
                 ***************9988.69**********************998888888888******************************************* PP

                 HHHHHHHHHHH--STTHHHHHHHHHTSTTTTTTSHHHHHHHHHHHH.T-HHHHT-TTSHHHHHHHHHHHHHHTT-HHHHHHHGGGGTTGGGB-HHHHHH CS
   DUF3458_C 194 vldkWfalqAtspredtlervkallehpaFdlknPNrvrsLigaFaaanpaaFhaadGsGYafladqvleldaiNpqvAaRlvtaltrwrrydekrqal 292
                 v+dkWf+lqAtsp++++l +v++ll+h++F++ nPNr+rsLigaFa++np+aFha+dGsGY+fl++++++l+++NpqvA+R++++l+r +ryd+ rqal
  EHU01270.1 745 VMDKWFMLQATSPAQNALLNVRRLLSHRSFSMGNPNRIRSLIGAFASGNPSAFHAEDGSGYRFLVEMLTDLNTRNPQVASRMIEPLIRLKRYDTRRQAL 843
                 *************************************************************************************************** PP

                 HHHHHHHHHTSTT--HHHHHHHHHHHC CS
   DUF3458_C 293 mkaaLeriaaaeelSkdvrEivskala 319
                 m++aLe+++  e+lS d++E+++kal+
  EHU01270.1 844 MRQALEQLQGLEKLSGDLYEKITKALN 870
                 *************************95 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.9   2.1e-58   6.3e-55       1     218 []     225     439 ..     225     440 .. 0.95

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 2.1e-58
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   +a+   k+ +++ ee+f+++Y+l+  ++va++ f++gAMEn+gl +++++++l++ e+++++d+  ++ vi HE++H+W+Gn Vt++ W +l L+EG
    EHU01270.1 225 WAMTSLKNSMKWDEERFGLEYDLDIFMIVAVDFFNMGAMENKGLNIFNSKYVLAKAETATDKDYLGIEAVIGHEYFHNWTGNRVTCRDWFQLSLKEG 321
                   7899999****************************************************************************************** PP

                   HHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE CS
  Peptidase_M1  98 fatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykna 194
                   ++++ +++++++l + +  + + +  ++  +++eda+ ++hpi  + ++  e++++++ ++YeKG++++rm+++llgee+Fqkg++ Y+k+++ ++a
    EHU01270.1 322 LTVFRDQEFSSDLGSRAVNRIDNVRIMRGAQFAEDASPMAHPI--RPDQVIEMNNFYTLTVYEKGSEVIRMMHTLLGEENFQKGMQLYFKRHDGSAA 416
                   *************995544555557788899************..699999********************************************** PP

                   -HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 195 etedlwdaleealnkdisevmdtw 218
                   +++d+++a+e+a++ d+s++ ++w
    EHU01270.1 417 TCDDFVQAMEDASGVDLSQF-RRW 439
                   ******************99.555 PP

>> DUF3458  Domain of unknown function (DUF3458) Ig-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.2   2.1e-36   6.3e-33       1      95 []     444     545 ..     444     545 .. 0.98
   2 ?   -3.5   0.0       4.9   1.5e+04      34      45 ..     585     596 ..     565     641 .. 0.57

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 2.1e-36
                 S--EEEEEEEEETTTTEEEEEEEEE---BSSBSS-----EEEEEEEEETTS-BECE.......EEEEEE-SSEEEEEEC---S-EEEEESTT--SSSEE CS
     DUF3458   1 GtPevtvsesydeaaktytltlsQktpptagqkekkplviPiklalldekGeelel.......ekvlelteaeqsftfenvaekpvpSllrdFSAPvkl 92 
                 GtP+vtv+++y+++ ++ytl+++Q+tppta+qkek pl+iP++++l+d +G+ ++l       ++vl++te+ q+ftf+nv  +pvpSllr+FSAPvkl
  EHU01270.1 444 GTPTVTVRDDYNPELEQYTLHVTQHTPPTADQKEKLPLHIPLDIELYDGQGKVIPLqrdghpvHNVLNVTEEFQTFTFDNVYFQPVPSLLREFSAPVKL 542
                 9******************************************************9999999888********************************** PP

                 E-- CS
     DUF3458  93 eyd 95 
                 +y+
  EHU01270.1 543 DYK 545
                 985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.9
                 S-----EEEEEE CS
     DUF3458  34 ekkplviPikla 45 
                 + + l +P+++a
  EHU01270.1 585 QGQHLSLPLHVA 596
                 334444444433 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   8.2e-18   2.4e-14      85     186 .]      89     186 ..      16     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 8.2e-18
                     EEEEEEEEEEE-....BSSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTS..EEEESSECCCEEEETTCEEE CS
  Peptidase_M1_N  85 kytLeieyegel....ndklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkee..talSnmpeeeseklengqki 173
                     ++tL  +++ ++    n  l+Glyk     +ge+   ++Tq+ea+ +R ++  +D+P+v+A+ft++i+a+ ++  ++lSn+++++s  +e+g+++
      EHU01270.1  89 SFTL--KIVNDIhpdrNSALEGLYK-----SGEA---LCTQCEAEGFRHITWYLDRPDVLARFTTTIIADGNRypFLLSNGNRIDSGHDEQGRHW 173
                     3333..3344444555888999999.....7777...*********************************99889******************** PP

                     EEEEEEESBEGGG CS
  Peptidase_M1_N 174 teFeqtpkmstYL 186
                     +++++ ++++ YL
      EHU01270.1 174 VKWQDPFPKPCYL 186
                     ************8 PP

>> Ovate  Transcriptional repressor, ovate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.4e-06     0.013      17      43 ..     558     584 ..     552     589 .. 0.88
   2 ?   -1.9   0.0       1.1   3.4e+03      23      36 ..     676     689 ..     670     701 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.4e-06
       Ovate  17 aekgikdweeLeeLLacYLslNskehh 43 
                 a+++ ++w+  ++LLa+YL+lN ++h 
  EHU01270.1 558 ASNDFSRWDAAQSLLATYLRLNVARHQ 584
                 5688899***************99996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
       Ovate  23 dweeLeeLLacYLs 36 
                  +++L++++  YL+
  EHU01270.1 676 GKRSLKNICLYYLA 689
                 5789*********8 PP

>> DUF2063  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.34     1e+03      20      58 ..     263     302 ..     249     305 .. 0.83
   2 ?    8.4   0.0   0.00085       2.6      45      77 ..     389     421 ..     373     427 .. 0.82
   3 ?   -0.9   0.0      0.67     2e+03      16      47 ..     623     659 ..     595     667 .. 0.54

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.34
                 XXXXX--HHHHHH.HHHHHHHHHHHTTTGGGGS-HHHHHH CS
     DUF2063  20 saakrlavYrnlv.fnnlieaLaaaFpvlrallGeerfda 58 
                  ++k+l+++++ + +++ ++a ++++  ++a++G e f++
  EHU01270.1 263 MENKGLNIFNSKYvLAKAETATDKDYLGIEAVIGHEYFHN 302
                 5678889998776258899999**************9985 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00085
                 TTGGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH CS
     DUF2063  45 pvlrallGeerfdalarayirahpsrspllrey 77 
                  ++++llGee+f++ ++ y+++h  +  + +++
  EHU01270.1 389 RMMHTLLGEENFQKGMQLYFKRHDGSAATCDDF 421
                 5789*******************9888777776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.67
                 ........XXXXXX--HHHHHHHHHHHHHHHHHTTTG CS
     DUF2063  16 d.....pglsaakrlavYrnlvfnnlieaLaaaFpvl 47 
                 +      ++++++ +a+ r++++ +l + La+ F ++
  EHU01270.1 623 NeiaelFEIIDPQAIALVREALVRTLARELADEFFAV 659
                 0555554555555666666666666666666665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6119.58
//
Query:       EHU01271.1  [L=262]
Description: ATP-binding component of an ABC superfamily alkanesulfonate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-30  107.0   0.0    1.6e-30  106.4   0.0    1.3  1  ABC_tran     ABC transporter
    1.2e-06   28.6   0.1      0.012   15.4   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.4e-06   27.5   1.6    5.3e-06   26.9   1.6    1.5  1  AAA_16       AAA ATPase domain
    7.5e-06   26.3   0.1    2.3e-05   24.7   0.1    1.7  1  AAA_22       AAA domain
    2.4e-05   23.9   0.0       0.03   13.7   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00025   21.3   0.2      0.079   13.2   0.0    2.5  2  AAA_28       AAA domain
    0.00047   20.1   0.0    0.00083   19.3   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
    0.00047   20.3   0.0     0.0015   18.7   0.0    1.8  1  AAA_33       AAA domain
     0.0016   18.2   0.4     0.0063   16.3   0.2    2.0  2  AAA_30       AAA domain
      0.002   17.8   0.6      0.016   14.8   0.0    2.4  2  AAA_25       AAA domain
     0.0026   17.8   0.1     0.0034   17.4   0.1    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0046   16.3   0.0       0.79    9.0   0.0    2.1  2  ATPase       KaiC
     0.0084   14.9   0.3          2    7.1   0.0    2.6  2  ABC_ATPase   Predicted ATPase of the ABC class
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.027   14.2   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.014   14.6   0.1      0.042   13.0   0.0    1.7  2  NB-ARC       NB-ARC domain
      0.017   15.0   0.5      0.093   12.6   0.1    2.1  2  NACHT        NACHT domain
      0.034   13.0   0.0      0.048   12.5   0.0    1.1  1  DLIC         Dynein light intermediate chain (DLIC)
      0.049   13.7   0.1       0.26   11.4   0.1    2.0  1  Dynamin_N    Dynamin family
       0.15   12.6   0.0       0.27   11.8   0.0    1.5  1  AAA_18       AAA domain
       0.19   11.7   0.0       0.28   11.1   0.0    1.3  1  Rad17        Rad17 P-loop domain
       0.21   12.1   0.0       0.33   11.4   0.0    1.2  1  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   1.9e-33   1.6e-30       1     136 [.      31     165 ..      31     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.9e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsk 91 
                 l+n++l++  g+ va+vG++G+GKStLl+llagl++ teG++l   ++l+      +r e + ++q+++l p ++v +n        + +e +++al+ 
  EHU01271.1  31 LNNLDLHIPSGQFVAVVGRSGCGKSTLLRLLAGLENSTEGQLLAGTAPLH-----TARDETRLMFQDARLLPWKKVIDNvalglrgnAWREAAHEALAA 124
                 79****************************************55555544.....6****************************664333447777777 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +gl + + +     p+ LSgGqkqrvalaral+ +p llllDEp 
  EHU01271.1 125 VGLADRASD----WPAALSGGQKQRVALARALIHRPGLLLLDEPL 165
                 777774444....46*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.012       1      22 [.      43      64 ..      43      94 .. 0.80
   2 !   11.1   0.2    0.0003      0.26     237     298 ..     138     197 ..     131     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + +++G+ g+GKS+LL++l +l
  EHU01271.1 43 FVAVVGRSGCGKSTLLRLLAGL 64
                6789***************999 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0003
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 lS G+k+  al+ al+ ++   +lll+DEp   L+     +  el+++l + ++  v+l+TH+
  EHU01271.1 138 LSGGQKQRVALARALIHRP---GLLLLDEPLGALDALTRIEMQELIESLWQqHNFTVLLVTHD 197
                 7999999999999999999...**************66666669999999999*********8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   1.6   6.2e-09   5.3e-06      12     143 ..      30     163 ..      27     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 6.2e-09
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql..esa.ipy.salaqalareellrqlldeaesaeleawrekleeal 105
                 +l+ l+ ++ ++++ v ++G sG+GKs+l+r l+  le + +g +l+g++  +  + + +++  + a++l +++++  ++        +awre+ +eal
  EHU01271.1  30 ILNNLD-LHIPSGQFVAVVGRSGCGKSTLLRLLAG-LENStEGQLLAGTAPLHtaR-DeTRLmFQDARLLPWKKVIDNVALG---LRGNAWREAAHEAL 122
                 556665.45556689*******************5.555526999****9999642.2333335577777787887777777...45688999999999 PP

      AAA_16 106 aavpelagaea........srllellkrll..allsrderplvlvlDd 143
                 aav+ +++a+         +      k+ +  a++   +rp +l+lD+
  EHU01271.1 123 AAVGLADRASDwpaalsggQ------KQRValARALI-HRPGLLLLDE 163
                 84444444443553322331......22221122222.4454555553 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   2.7e-08   2.3e-05       5     128 ..      41     194 ..      38     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.7e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee....................erpevv.......fvtlpsst.sskdllrellralglelkaerlss 75 
                  ++++v+G sG+GK+tllr l+   +  +                        ++++++        v l   +  +++ ++e l a+gl   a  +  
  EHU01271.1  41 GQFVAVVGRSGCGKSTLLRLLAGLENSTE---GqllagtaplhtardetrlmfQDARLLpwkkvidNVALGLRGnAWREAAHEALAAVGLADRA-SDWP 135
                 6899*****************99875444...24458999999999999999955555555552254444333368999999999999998888.5556 PP

      AAA_22  76 eell.ealeqalrarav...ielliiDE....aqhlr...seealeeLrsllnlsrkgvqliLv 128
                  +l   + ++ + ara    ++ll++DE        +   + e+ e + sl+   +++++++Lv
  EHU01271.1 136 AALSgGQKQRVALARALihrPGLLLLDEplgaL---DaltRIEMQELIESLWQ--QHNFTVLLV 194
                 6666666666666666677778******54444...44436999999999999..****99998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0016       1.4      23      41 ..      40      58 ..      23      67 .. 0.84
   2 !   13.7   0.0   3.5e-05      0.03     136     211 ..     137     208 ..      81     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
                TSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnll 41
                s +f a+vG+ G+GKs ll
  EHU01271.1 40 SGQFVAVVGRSGCGKSTLL 58
                45799***********987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.5e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +LSgG+k+ vala       +++  l llDe   aLD+  + ++ el+++  ++  f v  +++++ e +    +v
  EHU01271.1 137 ALSGGQKQRVALARA----LIHRPGLLLLDEPLGALDALTRIEMQELIESLWQQHNFTVLLVTHDVSEAVAMADRV 208
                 7*******9988754....467788************************988888887777777766665544444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   9.2e-05     0.079       2      80 ..      44     130 ..      43     152 .. 0.59
   2 ?    5.9   0.0     0.016        14     134     162 ..     173     200 ..     168     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.2e-05
      AAA_28   2 ivitGgestGKTtlleaLa..ar...gypvvpEaareileekl...akgedalpwvedllafaervleeqleeeaaaaankvlfcDr 80 
                 ++++G +++GK+tll+ La  ++   g      a     ++++   +++ + lpw + + ++a ++  ++ +e+a  a   v + Dr
  EHU01271.1  44 VAVVGRSGCGKSTLLRLLAglENsteGQLLAGTAPLHTARDETrlmFQDARLLPWKKVIDNVALGLRGNAWREAAHEALAAVGLADR 130
                 7999***************77223332222222212222222223355556677754444444444444444433335555555555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.016
      AAA_28 134 reaiderlrealrelgipviivpsgdvee 162
                 r +++e+++++++++++ v+ v + dv+e
  EHU01271.1 173 RIEMQELIESLWQQHNFTVLLV-THDVSE 200
                 889*******************.998876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.7e-07   0.00083      87     126 ..      28      68 ..       8      95 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.7e-07
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelk 126
                  ++ l++l  ++ + +++++vG SG GKStL+  l++ ++  
   EHU01271.1  28 RTILNNLDLHIPSgQFVAVVGRSGCGKSTLLRLLAGLENST 68 
                  4556666666666699*****************99964444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.7e-06    0.0015       2     111 ..      44     203 ..      43     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.7e-06
      AAA_33   2 vllvGlpGsGKstlaerl..lkklg...avllssdt........................................lrrrlfg...tdqqsktdytrvl 52 
                 v +vG +G+GKstl++ l  l+      ++ll+  +                                        ++++l++    d+ s+ +++ ++
  EHU01271.1  44 VAVVGRSGCGKSTLLRLLagLE--NsteGQLLAGTAplhtardetrlmfqdarllpwkkvidnvalglrgnawreaAHEALAAvglADRASD-WPAALS 139
                 679*************994444..3458999999889999999999999999****999999999999999977775555555643433333.555566 PP

      AAA_33  53 drlyqilnelarkalsagrnvildat.....nlsr.rerarflklarrlgvpvrivvvetdeetl 111
                    +q++ +lar    + + ++ld +      l+r + ++ + +l++++++ v++v+ +++e+++
  EHU01271.1 140 GGQKQRV-ALARALIHRPGLLLLDEPlgaldALTRiEMQELIESLWQQHNFTVLLVTHDVSEAVA 203
                 6677777.999999999999******9988855551555677788*****************987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   7.4e-06    0.0063      17      61 ..      41      85 ..      34     194 .. 0.81
   2 ?    0.1   0.0      0.64   5.5e+02      38      65 ..     180     207 ..     174     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.4e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkv 61
                g ++++++G+ G GK+t+l+ l+ + ++  g+ ++g Ap ++a ++
  EHU01271.1 41 G-QFVAVVGRSGCGKSTLLRLLAGLENSTeGQLLAGTAPLHTARDE 85
                4.5999*******************99998888999**98887665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.64
      AAA_30  38 lreaweaaggrviglAptgkaAkvLaee 65 
                 ++ +w++++++v+++++    A ++a+ 
  EHU01271.1 180 IESLWQQHNFTVLLVTHDVSEAVAMADR 207
                 5789999999999999999999888864 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.016      27      54 ..      35      62 ..      27      89 .. 0.87
   2 ?    0.7   0.2      0.38   3.2e+02     170     188 ..     178     196 ..     110     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
      AAA_25 27 kgllpagelallaGapgtGKttlaldla 54
                + ++p g +++++G++g+GK+tl+  la
  EHU01271.1 35 DLHIPSGQFVAVVGRSGCGKSTLLRLLA 62
                5699*******************86665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.38
      AAA_25 170 ealeriarrtgaavllvhH 188
                 e +e++ ++++ +vllv H
  EHU01271.1 178 ELIESLWQQHNFTVLLVTH 196
                 4466677789999999998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1     4e-06    0.0034       2      22 ..      44      64 ..      43     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4e-06
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                va+vGr+  GKStL++ l g 
  EHU01271.1 44 VAVVGRSGCGKSTLLRLLAGL 64
                89****************983 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00093      0.79      16      35 ..      38      57 ..      27      64 .. 0.87
   2 ?    5.2   0.0     0.014        12     138     190 ..     170     221 ..     165     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00093
      ATPase 16 ipegrvvlitGepGtGKtif 35
                ip+g+ v ++G +G+GK+++
  EHU01271.1 38 IPSGQFVAVVGRSGCGKSTL 57
                7****************987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.014
      ATPase 138 avaReilrqlvrvl.kklgvTailvsekssseeaaggygveefivdgvivLdlk 190
                 a++R ++++l++ l ++ + T +lv+  ++se  a   +v   i +g i Ldl+
  EHU01271.1 170 ALTRIEMQELIESLwQQHNFTVLLVTH-DVSEAVAMADRVLL-IEEGRIGLDLQ 221
                 67899********************99.55666677777777.77888888776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0093       7.9     241     264 ..      37      61 ..      34      70 .. 0.86
   2 !    7.1   0.0    0.0024         2     377     413 ..     177     213 ..     135     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0093
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  ip G  +++vG+   GKsTLL+ l
  EHU01271.1  37 HIPSGqFVAVVGRSGCGKSTLLRLL 61 
                 689998889*************966 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0024
                 HHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 377 vdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                  +++++l+++++ +++lv+  +++ +++Ad+v+l+ee
  EHU01271.1 177 QELIESLWQQHNFTVLLVTHDVSEAVAMADRVLLIEE 213
                 467899***************************9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.1e-05     0.027      17      39 ..      36      58 ..      29      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                ++i  +g ++ ++G+sG GKSTll
  EHU01271.1 36 LHIP-SGqFVAVVGRSGCGKSTLL 58
                5565.555999************8 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     5e-05     0.042      20      38 ..      41      59 ..      24      70 .. 0.78
   2 ?   -1.5   0.0       1.4   1.2e+03      94     111 ..     146     163 ..     126     208 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5e-05
                SEEEEEEESTTSSHHHHHH CS
      NB-ARC 20 slvvalvGmgGvGKttlak 38
                  +va+vG+ G+GK+tl++
  EHU01271.1 41 GQFVAVVGRSGCGKSTLLR 59
                369**************86 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
                 HHHHHHCCCTTEEEEEEE CS
      NB-ARC  94 rklvrlLltkrfllvlDD 111
                   l r+L+++  ll+lD 
  EHU01271.1 146 VALARALIHRPGLLLLDE 163
                 567777777777777774 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00011     0.093       3      21 ..      44      62 ..      42      83 .. 0.88
   2 ?    0.4   0.1      0.63   5.4e+02      75     125 ..     149     194 ..     124     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                v++ G++G+GK+tLl+ la
  EHU01271.1 44 VAVVGRSGCGKSTLLRLLA 62
                899************9876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.63
                 HHCCSCCCEEEEEE....-STT-SS-TCH.........HHHHHCTTTTT--EEEE CS
       NACHT  75 vllelperlLlilD....glDelvtdlgqkekqpvrtlLselirkkllpeaslll 125
                  ++ + +  Ll+lD    +lD         ++ ++++l+++l ++     + ll+
  EHU01271.1 149 ARALIHRPGLLLLDeplgALDA-------LTRIEMQELIESLWQQ--HNFTVLLV 194
                 5555666667777622222333.......3445556777777777..44444444 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.6e-05     0.048      21      56 ..      37      72 ..      30      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-05
        DLIC 21 klPsgksvlvlGedgsGkttliaklqGveeekkGrG 56
                 +Psg+ v v+G +g+Gk+tl+  l G+e++  G+ 
  EHU01271.1 37 HIPSGQFVAVVGRSGCGKSTLLRLLAGLENSTEGQL 72
                58****************************999975 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1    0.0003      0.26       1      36 [.      44      79 ..      44     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36
                +avvG    GKS++l  L g +    g+ +   +pl
  EHU01271.1 44 VAVVGRSGCGKSTLLRLLAGLENSTEGQLLAGTAPL 79
                89****************998866666666555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00031      0.27       1      25 [.      44      70 ..      44     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00031
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf..g 25
                +++ G +G+GK+tl + L+ ++++  g
  EHU01271.1 44 VAVVGRSGCGKSTLLRLLAGLENSteG 70
                6899**************887644552 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.28      46      70 ..      42      66 ..      27     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
       Rad17 46 riLLisGPsGCgkstvvkvLskelg 70
                + + + G sGCgkst ++ L+    
  EHU01271.1 42 QFVAVVGRSGCGKSTLLRLLAGLEN 66
                567799*************996555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00039      0.33      16      39 ..      35      61 ..      23      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00039
      AAA_23 16 dF...skgltlItGpNGaGKTTildAi 39
                d+   s  +++++G  G+GK+T+l+ +
  EHU01271.1 35 DLhipSGQFVAVVGRSGCGKSTLLRLL 61
                44556778999************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1865.81
//
Query:       EHU01272.1  [L=382]
Description: alkanesulfonate monooxygenase, FMNH(2)-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-87  293.1   9.8    3.5e-87  292.8   9.8    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.8   9.8     2e-91   3.5e-87       3     313 ..       5     325 ..       2     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 292.8 bits;  conditional E-value: 2e-91
  Bac_luciferase   3 fgvflptrqggalgaas.....aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaat 92 
                     +++flpt+++g++ +++     ++ +y+ ++a+aa++lGf +v+++++ ++    +da+ ++a l ++T+r+r+++a +p+   +P+ +A+qaat
      EHU01272.1   5 VFWFLPTHGDGHYLGTAegarpVDHAYMQQVAQAADRLGFGGVLIPTGRSC----EDAWLVAASLIPVTQRLRFLVALRPGV-ISPTQAARQAAT 94 
                     79***********99999*********************************....***************************.************ PP

  Bac_luciferase  93 LdhlsgGRfglglgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiP.vyvaaaspaglelaar 184
                     Ld+ls+GR+ ++l+tgg+++e + +Gv  dh+erya  +Ef++v+rr+++ge+vd+eG++++v+ga+l  +p+q+p+P ++++++s+ + +laa+
      EHU01272.1  95 LDRLSNGRALFNLVTGGDPEELAGDGVflDHRERYAESAEFTRVWRRVLEGETVDYEGKHVHVRGARLMFKPVQQPRPpLWFGGSSEPAQDLAAE 189
                     ****************************************************************************555**************** PP

  Bac_luciferase 185 hadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld..........fyaldsegagreaeaa...e 266
                      +d++l++geppe ++e+ie++ra aa+ gr   ++r+gi+l+viv++t+eeA++ a++lia++d          f ++ds+g++r+a+++   +
      EHU01272.1 190 QVDVYLTWGEPPELVKEKIEQVRAKAAAQGR---QVRFGIRLHVIVRETNEEAWQAADKLIANVDdatiaraqsaFQRTDSVGQQRMAALHggrR 281
                     *******************************...*********************************************************9988 PP

  Bac_luciferase 267 iqeeedanlwagaadavpdelvaatalvGtpeqvaerlaayaeagvd 313
                     +++e ++nlwag++ ++    +a+talvG++ +va+r+++y+ +g++
      EHU01272.1 282 DKLEISPNLWAGVGLVR---SGAGTALVGDAPTVAARMKEYETLGIE 325
                     9***************9...*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2725.08
//
Query:       EHU01273.1  [L=317]
Description: periplasmic-binding component of an ABC superfamily alkanesulfonate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-13   51.6   0.0    1.6e-13   51.1   0.0    1.2  1  NMT1            NMT1/THI5 like
    8.2e-13   48.3   0.0    1.9e-09   37.3   0.0    2.3  2  SBP_bac_3       Bacterial extracellular solute-binding protei
    5.8e-12   45.9   0.0    1.9e-11   44.1   0.0    1.8  1  NMT1_2          NMT1-like family
    2.7e-10   40.2   0.1    7.3e-10   38.8   0.1    1.7  2  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
      2e-08   34.0   0.0      7e-08   32.2   0.0    1.8  2  NMT1_3          NMT1-like family
    3.4e-07   30.1   0.0    4.7e-07   29.6   0.0    1.2  1  OpuAC           Substrate binding domain of ABC-type glycine 
  ------ inclusion threshold ------
      0.017   14.5   0.0      0.027   13.8   0.0    1.4  1  LysR_substrate  LysR substrate binding domain
       0.05   12.9   0.0      0.094   12.1   0.0    1.4  1  HEM4            Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   7.2e-17   1.6e-13      32     204 ..      68     236 ..      58     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 7.2e-17
                 THHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEE.EECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.T CS
        NMT1  32 sdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsgli.vlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvgg 129
                  + +e+++ +  d++ +  +  + a+a+g+++  +++   +p   +i v +ds++ks++DLkGk++++++++ +  ll + l+++g++ +d++ v  + 
  EHU01273.1  68 PQMLEALNVNSIDIASTGDIPPIFAQAAGADLLYIGSEPPKPKAEVIlVSQDSPLKSVADLKGKKVAFQKGSSSHNLLLRALEEAGLSIKDIQPVYLTP 166
                 566777788889999999999999*************99998877652778888********************************************* PP

                 T-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHH CS
        NMT1 130 tslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlkk 204
                  ++ +a+ +g+vDa+   +++   +++ +   +  +  l+d    +   + + ++ ++++++++ v + l+  + 
  EHU01273.1 167 ADARAAFQQGNVDAWA--IWD-PYYSAVL--LQGHVRVLKDGTTLNQTGPFYLATRAFAQNHNDFVLATLKTFSD 236
                 *************887..444.2333222..35666678888888999***************999998886655 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00048       1.1     110     158 ..      29      84 ..      16      99 .. 0.80
   2 !   37.3   0.0   8.3e-13   1.9e-09      86     178 ..     111     203 ..     100     236 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00048
                 TSEEEEETTSHHHHHHHHHHHC..........TSEEEEESSHHHHHHHHHTTSSSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 110 gkkvgvqagstaeellkeelkk..........gaeivefdtleealqaLkngrvdavva 158
                 + ++g q+gs++  l+k    +          +++ vef+  +++l+aL+ +++d + +
  EHU01273.1  29 QVRIGYQKGSVSMVLAKA---HrlletrfpqtKIQWVEFPAGPQMLEALNVNSIDIAST 84 
                 4689*******7755444...1124556666999999******************8765 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 8.3e-13
                 EEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEEE.ESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  86 gqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk....gaeive.fdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv 178
                 ++v+lv ++     s +ks+adLkgkkv+ q+gs++++ll ++l++      +i++ + t ++a +a ++g+vda++  +p    ++ +     ++  
  EHU01273.1 111 AEVILVSQD-----SPLKSVADLKGKKVAFQKGSSSHNLLLRALEEaglsIKDIQPvYLTPADARAAFQQGNVDAWAIWDPYYSAVLLQGHVRVLKDG 203
                 578899844.....3699999******************99877778887666775499******************999998888887777766664 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   8.7e-15   1.9e-11       2     242 ..      24     246 ..      23     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 8.7e-15
      NMT1_2   2 apekeqlklGfialtdaaplvvakekglfake..GltvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlaslnlnGqaitls 97 
                 +p +eq+++G+++ +  +++v ak   l +      +++++++ ++++++++l  +++D+a     p +++   G        ++  + + +   i++s
  EHU01273.1  24 EPAPEQVRIGYQKGS--VSMVLAKAHRLLETRfpQTKIQWVEFPAGPQMLEALNVNSIDIASTgDIPPIFAQAAGA---DLLYIGSEPPKPKAEVILVS 117
                 68899******9976..55566666666665554677**************************7777777777777...33334444455556667776 PP

      NMT1_2  98 nklkdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtal 196
                 +         ++ lk++++     k+ k+a    +s h+lllr +L++aGl + +d++ v + p+++ a++++g++d+++  +P+ +  + +g  v +l
  EHU01273.1 118 Q---------DSPLKSVADL----KGKKVAFQKGSSSHNLLLR-ALEEAGLSI-KDIQPVYLTPADARAAFQQGNVDAWAIWDPYYSAVLLQGH-VRVL 200
                 5.........5566555333....5669999999999*99998.799******.*******************************777777777.7777 PP

      NMT1_2 197 tsqelwkdhPekvlgvredfveknpntaralvkalleAtkwlda.kk 242
                  +++ +++  + +  ++++f++++ + + a +k+  +A+ +    ++
  EHU01273.1 201 KDGTTLNQ-TGPFYLATRAFAQNHNDFVLATLKTFSDAEALTRSeRD 246
                 77766555.555667788999***************99988775444 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1   3.3e-13   7.3e-10      41     175 ..      69     195 ..      50     273 .. 0.71
   2 ?   -1.9   0.0      0.92   2.1e+03      39      60 ..     278     299 ..     268     308 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 3.3e-13
                     HHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HH CS
  Phosphonate-bd  41 avvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpe 135
                     ++ eal  +++Dia +g ++ + a++ ag+++l + ++   +     vi+v +ds+++s++dLkgk++af   sS    l+ +a L +eagl ++
      EHU01273.1  69 QMLEALNVNSIDIASTGDIPPIFAQA-AGADLLYIGSE-PPK-PKAEVILVSQDSPLKSVADLKGKKVAFQKGSSSH-NLLLRA-L-EEAGLSIK 157
                     799*******************9995.78888888886.223.44669**********************8877644.555555.8.9*****86 PP

                     HHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH- CS
  Phosphonate-bd 136 ddfsevfsgshdaavlavlsgdadaaavsadaledlvaeg 175
                      d+++v+      a +a  +g++da a+++  +  +  +g
      EHU01273.1 158 -DIQPVYLTPA-DARAAFQQGNVDAWAIWDPYYSAVLLQG 195
                     .78***98754.4677889********9987776666332 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.92
                     HHHHHHHHHTTS-SEEE--HHH CS
  Phosphonate-bd  39 yaavvealragqvDiaflgpla 60 
                      +a+  al++ ++D+ +++ l 
      EHU01273.1 278 VSAHTVALQQKTADLFYANHLI 299
                     57888999999****9999776 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.1e-11     7e-08      89     166 ..     108     183 ..      82     194 .. 0.88
   2 ?   -1.1   0.0      0.43   9.7e+02     153     210 ..     241     300 ..     215     304 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 3.1e-11
      NMT1_3  89 yaevfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaal 166
                  ++++ ++vs+ds ++s+adlkgk+v++ ++gs++++  ++ le++gls kd+++  +l ++++  a+++g++d+ a+
  EHU01273.1 108 KPKAEVILVSQDSPLKSVADLKGKKVAF-QKGSSSHNLLLRALEEAGLSIKDIQP-VYLTPADARAAFQQGNVDAWAI 183
                 45788999********************.66***********************7.9*****************9887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.43
      NMT1_3 153 adalkdgqldgaalvaGvPvsavtqlaa.sedikliplddeqldkllkeyp.vftkyvip 210
                 ++  +d+ ++  a+  G+P + +++  + + +  + p+++ +++  +k+ + +++++ ip
  EHU01273.1 241 TRSERDQSIHLLATSIGLPEAVIASNLDhRPPSPVSPVSAHTVALQQKTADlFYANHLIP 300
                 444568899999999999999987544404566677777777766665555245555665 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.1e-10   4.7e-07       2     227 ..      29     235 ..      28     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.1e-10
                 EEEEEEESSHHHHHHHHHHHHHHHHT.TEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEE.EESEEECEEEEEEHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekk.GykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlg.plgagnteglavpkyvae 98 
                 +++ig++  + ++vla+  + l  +    k +++++ +++ + +al  ++iD++    tg     +++a+    +l+  g + +   +e + v+++   
  EHU01273.1  29 QVRIGYQKGSVSMVLAKAHRLLETRFpQTKIQWVEFPAGPQMLEALNVNSIDIAS---TGDIPPIFAQAAG--ADLLYIGsEPPKPKAEVILVSQD--- 119
                 699**************877666666555************************99...8888888888555..44444452666667777778777... PP

                 HHTTTBHHHHCTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHHHHHHHHHTTCSSEEEEETTSTHHHHT..TEEE-B-TT CS
       OpuAC  99 kygiksisDLkkpaedlelgakgeflgrpdgwgcekvtegllkaYgldkvelvegseaamdaelyaaykrgepvvvyawtPdwaikky..dlvvLedpk 195
                  + +ks++DL           kg+ ++ + g+ ++++   +l++ gl +++++ + +    a++ aa+++g++++  +w P      +  +++vL+d  
  EHU01273.1 120 -SPLKSVADL-----------KGKKVAFQKGSSSHNLLLRALEEAGL-SIKDI-QPVYLTPADARAAFQQGNVDAWAIWDPYYSAVLLqgHVRVLKD-- 202
                 .5********...........777778888889999***********.56666.55566666*******************8776666448*****5.. PP

                 STS-SSEEEEEEEEHHHHHHSCT.HHHHHHHHC CS
       OpuAC 196 glfppaynvvpvvrkefaekaPe.vaafLekls 227
                 g+  +++   ++++++fa+ + + v a L+++s
  EHU01273.1 203 GTTLNQTGPFYLATRAFAQNHNDfVLATLKTFS 235
                 55566679999**********999999999987 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.027       6     130 ..      28     156 ..      23     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                     EEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESH.HHHHHHHHTTSSSEEEEESSS....CCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   6 grLrigapptlaryllppllarfraryPevelelvegds.eelldllaegelDlairagpp....edsglearpLaeeplvlvaspdhpLargep 95 
                      ++rig      + +l+++ + +  r+P+ +++ ve +  +++l++l+ +++D+a +++ p    + +g +   +++ep  + a       +  p
      EHU01273.1  28 EQVRIGYQKGSVSMVLAKAHRLLETRFPQTKIQWVEFPAgPQMLEALNVNSIDIASTGDIPpifaQAAGADLLYIGSEPPKPKAEVIL-VSQDSP 121
                     579999999999************************99989******************99****99999999999***998888886.777889 PP

                     E.CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC CS
  LysR_substrate  96 v.sledLadeplilleegsglrdlledalreaglkp 130
                     + s +dL++ +  + ++gs+ + ll++al+eagl++
      EHU01273.1 122 LkSVADLKGKKVAF-QKGSSSHNLLLRALEEAGLSI 156
                     999******99988.77****************998 PP

>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05     0.094     114     172 ..     127     180 ..     117     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.2e-05
                 ---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE.-SEEEEE-HHHHHHHHHHHHTT--SE CS
        HEM4 114 slagkrvlllrgeiarddlaegLeergaevdev.evYetvpaeeepeelkealkagevda 172
                 +l+gk+v + +g  + + l ++Lee+g++++++ +vY t      p+++++a+++g+vda
  EHU01273.1 127 DLKGKKVAFQKGSSSHNLLLRALEEAGLSIKDIqPVYLT------PADARAAFQQGNVDA 180
                 78899**************************99458999......999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2129.34
//
Query:       EHU01274.1  [L=180]
Description: NAD(P)H-dependent FMN reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-31  109.1   0.0    1.9e-31  108.9   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase
    2.8e-08   33.7   0.0    3.5e-08   33.4   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   2.1e-35   1.9e-31       1     151 [.       1     141 [.       1     145 [. 0.96

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 2.1e-35
                 -EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCH CS
     FMN_red   1 mkilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrl 98 
                 m++l ++GS+r +s++  l+  ++  l+++g+ev   +++++ +    l+++ +     +s+++ +l+e + aad+l+i+tP+Y++s+sg+lK++lD+l
  EHU01274.1   1 MRVLTLAGSPRFPSRSTSLLALCQHKLEARGVEVIPWNIHNFqPED--LINARF-----DSPAILALSEDLSAADGLVIATPVYKASFSGALKTVLDLL 92 
                 9****************************************96666..*****9.....9*************************************** PP

                 T-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECSEEEET CS
     FMN_red  99 srtrgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvpraavavg 151
                 +    +++l++K+v+++a gg++ + l+++++l++vl+ l+a  v ++++a +
  EHU01274.1  93 P----ERALAHKVVLPLASGGSAGHMLALDYALKPVLNALKAEEVLHGVYAED 141
                 9....*************************************99999888755 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0     4e-12   3.5e-08       1     103 [.       1      92 [.       1     129 [. 0.85

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4e-12
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTT.CHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHH CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeek.padveseqiekllaadaivlqfPlwwfgvPail 96 
                   m++L++ ++pr+  s+s +l++    +le+ g  ev   ++++     ++++dl     ++++ ++ + +   e+l aad +v+++P++  +++ +l
    EHU01274.1   1 MRVLTLAGSPRF-PSRSTSLLALCQHKLEARG-VEVIPWNIHN-----FQPEDLI----NARFdSPAILALS-EDLSAADGLVIATPVYKASFSGAL 85 
                   99**********.5******************.9*********.....6666666....2333236677777.88********************** PP

                   HHHHHHH CS
  Flavodoxin_2  97 KgwiDrv 103
                   K  +D  
    EHU01274.1  86 KTVLDLL 92 
                   **99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1326.21
//
Query:       EHU01275.1  [L=326]
Description: beta-1,6-glucosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-31  109.2   0.0    3.2e-31  108.4   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    4.9e-13   49.5   0.0    7.2e-13   49.0   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    3.3e-09   36.6   0.2      1e-08   35.0   0.0    1.7  2  Glyco_tranf_2_2  Glycosyltransferase like family 2
     0.0014   18.9   0.1      0.067   13.5   0.0    2.7  2  DUF3932          Protein of unknown function (DUF3932)
      0.002   18.6   0.0     0.0054   17.2   0.0    1.9  1  Glyco_tranf_2_4  Glycosyl transferase family 2
  ------ inclusion threshold ------
       0.18   11.2   0.3       0.29   10.5   0.3    1.2  1  DUF373           Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   1.1e-34   3.2e-31       1     131 [.       7     136 ..       7     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 1.1e-34
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      sv+iptyN ek++ e+++sl++q  +   eii+v+D+StD+tv+++e++ +  p+v+vi+ + n G ++a+ +g++aa+g++++f+D Dd++ +
       EHU01275.1   7 SVIIPTYNVEKYIVECVDSLVSQ-IRTPNEIIIVNDSSTDGTVALIEQHYAHLPQVKVITIP-NGGAGNARDKGVEAAKGQFVFFCDPDDVVVD 98 
                      8**********************.**************************************.55***************************** PP

                      THHHHHHHHHHH..TTCEEEEEEEEEECCCCCCCHC-S CS
  Glycos_transf_2  95 dwleklvealekd.gadvvlgqrprifgetdeiernkr 131
                      + +++l++ +e+  ++d+++ +  +++ ++ ei+++k 
       EHU01275.1  99 GLVSELAQVIEHYpDTDLFCFNSSAYREDKPEITWPKV 136
                      ***********975789999999999999999999875 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.4e-16   7.2e-13       4     127 ..       6     124 ..       5     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.4e-16
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      l+v++pt+n e++++e+++sl++q + + e+++v d s+++t++ +e+  a lp+v+v ++  ++    +g+ +a   +++a+k+++v + D D
       EHU01275.1   6 LSVIIPTYNVEKYIVECVDSLVSQIRTPNEIIIVNDSSTDGTVALIEQHYAHLPQVKVITI--PN----GGAGNARDKGVEAAKGQFVFFCDPD 93 
                      79*********************99999**************************9865555..45....36777779***************** PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqff.ltpkvgavgtpvfll 127
                      +vv ++++  l+q++  +p+ + +  +  ++
       EHU01275.1  94 DVVVDGLVSELAQVIeHYPDTDLFCFNSSAY 124
                      *************997777777666555555 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   3.5e-12     1e-08       1     102 [.       7     104 ..       7     113 .. 0.86
   2 ?   -1.1   0.0      0.35   1.1e+03     184     220 ..     179     214 ..     173     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.5e-12
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfi 94 
                      sv+ip ++ e+   i e v    ++     e+i+v+d S++ ++  +++  ++  +v +   ++   + + ar +G++ a++++v+F+D D+ +
       EHU01275.1   7 SVIIPTYNVEKY--IVECVDSLVSQIRTPNEIIIVNDSSTDGTVALIEQHYAHLPQVKVITIPNG--GAGNARDKGVEAAKGQFVFFCDPDDVV 96 
                      89******9975..*****99999999999************99999999999998876666554..89999********************87 PP

  Glyco_tranf_2_2  95 ssDkfeki 102
                          +  +
       EHU01275.1  97 VDGLVSEL 104
                      65555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.35
  Glyco_tranf_2_2 184 rfrGhgaEDfdlllRlakaikslekmpvellykarak 220
                      rf+    ED+++ l + ++++++   + +  yk+r +
       EHU01275.1 179 RFIDRVHEDHNFTLSVFMKCNQV-WVSRQTYYKQRIR 214
                      67788889999999999999999.8888888887653 PP

>> DUF3932  Protein of unknown function (DUF3932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.057   1.7e+02      56      72 ..     203     219 ..     184     229 .. 0.78
   2 !   13.5   0.0   2.2e-05     0.067      41      79 ..     268     306 ..     226     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.057
     DUF3932  56 sssityyaqrvssasnt 72 
                  s  tyy qr+   s t
  EHU01275.1 203 VSRQTYYKQRIRGGSLT 219
                 4678*******877655 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.2e-05
     DUF3932  41 eytalhtlqtvperisssityyaqrvssasnteiiiyen 79 
                  y +l+ + +vp+++  +i y+ +rv ++s  e ++++ 
  EHU01275.1 268 IYLSLYNQTPVPDYVLNAIRYFGRRVKASSLKEWLLFNS 306
                 488999999********************9999988876 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06    0.0054       4      84 ..      16      96 ..      13     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
  Glyco_tranf_2_4  4 adiLpeflahh.lalgf.drilvydndstDgtrailke....lpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEfl 84
                     ++++ e+++ +  +++  ++i+++++ stDgt a++++    lp+vk++++++  ++     +++++   ++a++++v+++D D ++
       EHU01275.1 16 EKYIVECVDSLvSQIRTpNEIIIVNDSSTDGTVALIEQhyahLPQVKVITIPNGGAG-----NARDKGV-EAAKGQFVFFCDPDDVV 96
                     66677777765244444478****************995554477999999986653.....3333333.33467788888888776 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   9.6e-05      0.29      83     129 ..      17      64 ..      12      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.6e-05
      DUF373  83 rkiaeqldevlsklea.dsaivVsDGaeDesvlpiiqsrvkvdsvkrV 129
                 + i e +d+++s++++ +++i+V D+++D +v  i q + +  +vk +
  EHU01275.1  17 KYIVECVDSLVSQIRTpNEIIIVNDSSTDGTVALIEQHYAHLPQVKVI 64 
                 678999********9867**************9998888877777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2363.52
//
Query:       EHU01276.1  [L=433]
Description: PST family transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-34  120.1  22.1    4.5e-33  114.8  10.7    2.0  2  Polysacc_synt    Polysaccharide biosynthesis protein
    1.8e-11   43.8   8.7    1.8e-11   43.8   8.7    2.4  2  Polysacc_synt_3  Polysaccharide biosynthesis protein
    1.9e-07   30.9   5.0    1.9e-07   30.9   5.0    3.5  4  MatE             MatE
    5.5e-07   29.7   7.5    5.5e-07   29.7   7.5    4.4  5  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8  10.7     1e-36   4.5e-33       2     273 ..      10     279 ..       9     280 .. 0.94
   2 !   11.3   3.5   3.6e-05      0.16      74     203 ..     288     424 ..     282     429 .. 0.75

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 1e-36
  Polysacc_synt   2 lkgvivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrekkelvslillnvllvllvlvllflllll 97 
                    + ++++ll+ + ++ l+++ tl+ylar+lg    G++ala+a v + ++++d G+n++ ++ ia++r++k +v+ ++++++ ++l+l+ll+  +ll
     EHU01276.1  10 VVNILSLLAYRGASFLFPLATLPYLARVLGVDHMGILALAIACVLYCSTISDWGFNVYTTKDIAHHRDDKARVTQLFWSTFNAKLMLLLLTSGILL 105
                    56999******************************************************************************************* PP

  Polysacc_synt  98 iaaflglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslavlrkkfr 193
                    + a+  +p  ++l +i+ +  + lvg    +++l qg+e+   +a+  +  +   + l++++v +++d + a+l+  + +++++i+ l ++     
     EHU01276.1 106 T-ATWFNPSWHSLFFIILANCTTLVGSLFSFGWLMQGFEKLGKTAMIATFGNFCAIPLTFLLVKTPDDTWLAALIPGAVSIINAIITLKFVLEMKV 200
                    *.5555688888888888888889999999****************************************99999999999999999999997776 PP

  Polysacc_synt 194 prfvilslklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfsel 273
                       + ++ k +++ +++sa ++i  ++ +l++ +++++l+++++ + vGiYn+a++l+ a++++   i + a fP+ s l
     EHU01276.1 201 IGAYRFEPKEIKQRITDSADVFIAIAGANLFNSVNVVILASFTSHYMVGIYNGADRLRKAANSVPEQIGS-AFFPRVSHL 279
                    7777777***************************************************************.*****9986 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.6e-05
  Polysacc_synt  74 vslillnvllvllvlvllfllllliaa.....flglpelavlylilalmllllvgvasfrrglfq..glermkyaavsqvveqlsrvilvliavfl 162
                    v+ + ++++l++++++ +++++ l+a+     +lg+  l +  +++ ++l++l+g++++++gl+    +   +  ++ ++v  ++ v    ++ + 
     EHU01276.1 288 VAATRKSLMLSFGLSLSIVIFTWLFADqvvslLLGKDFLPSADVLRVFVLCFLFGNIAYPAGLQIliPHGLARQRMMVMMVAGVVNVPVCCLLAWK 383
                    556668999999999999999999999999966666666666666677777**********99862256666677888899999999999999999 PP

  Polysacc_synt 163 fldivaavlgavlaalvggivslavlrkkfrprfvilslkl 203
                    f++i aa    ++ +lv + ++ +++r++ +++ +++++ +
     EHU01276.1 384 FGAIGAAWSMVLAEVLVCIGIFGIMVRHNIWRDYAFPDRMN 424
                    99666666666666666666788999988887777776544 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   8.7     4e-15   1.8e-11       2     292 ..      34     329 ..      33     330 .. 0.71
   2 ?   -0.9   2.1      0.17   7.6e+02     115     159 ..     363     406 ..     356     418 .. 0.62

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 4e-15
  Polysacc_synt_3   2 LARLLspedFGvvaialvvislanlfvdmGlssal...iqkedlteedlstvftfnlvlgllialv...lfllaplias.....fynqpelvtv 84 
                      LAR L  +  G++a+a++ +   + ++d+G++  +   i +++++++ ++++f++++   l++ l+   ++l+a +        f+   +l++ 
       EHU01276.1  34 LARVLGVDHMGILALAIACVLYCSTISDWGFNVYTtkdIAHHRDDKARVTQLFWSTFNAKLMLLLLtsgILLTATWFNPswhslFFI--ILANC 125
                      9******************************98774446788888999******987554443333111222222222211111221..22222 PP

  Polysacc_synt_3  85 l....rvlalvlilsglssvqeallrrelkFkklfkitlvssvvgvivaivlAllglgvwALvigtllssllslvllwlaskwrprlkfslksl 174
                      +    ++ ++  +++g+ ++ ++ +    +F ++ +i l+  +v +    +lA l+ g+ +++   ++ +++  + ++ a       +f+ k++
       EHU01276.1 126 TtlvgSLFSFGWLMQGFEKLGKTAM--IATFGNFCAIPLTFLLVKTPDDTWLAALIPGAVSIINAIITLKFVLEMKVIGA------YRFEPKEI 211
                      2000123333333333333333322..23566666666666666666666666666666666666555555555555555......55555779 PP

  Polysacc_synt_3 175 kelfsfglklllsnllnylarnldnlliGkvlssaaLGlYsvakrlaslpvaeitsviakVlfPalSrl.qddkkklrelylkvlrlialivlP 267
                      k+ +  ++ ++++     l+++++ ++ +++ s + +G+Y+ a rl ++  + + + i + +fP +S+l  +dk++  ++++k+l l+  ++l 
       EHU01276.1 212 KQRITDSADVFIAIAGANLFNSVNVVILASFTSHYMVGIYNGADRLRKA-ANSVPEQIGSAFFPRVSHLfGRDKAAAVAATRKSLMLSFGLSLS 304
                      999999999************************************9876.6889999**********97368999999**************** PP

  Polysacc_synt_3 268 iavglavvaellvkvllGsqWleav 292
                      i++++ ++a+ +v++llG+ +l+++
       EHU01276.1 305 IVIFTWLFADQVVSLLLGKDFLPSA 329
                      ********************99876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.17
  Polysacc_synt_3 115 fkitlvssvvgvivaivlAllglgvwALvigtllssllslvllwl 159
                      +++ +v+ vv v v  +lA+  +g+   +++ +l+++l ++ ++ 
       EHU01276.1 363 MMVMMVAGVVNVPVCCLLAW-KFGAIGAAWSMVLAEVLVCIGIFG 406
                      45556666666666666665.566666666666666666665543 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.3     0.049   2.2e+02      71     100 ..      89     118 ..      80     142 .. 0.80
   2 ?   -0.7   0.1      0.22   9.9e+02     124     160 ..     128     164 ..     115     165 .. 0.69
   3 !   30.9   5.0   4.1e-11   1.9e-07      17     160 ..     236     378 ..     221     379 .. 0.86
   4 ?   -3.4   0.1       1.5   6.7e+03     122     144 ..     386     408 ..     384     413 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.049
        MatE  71 alrqglilllllsliiallvllfseqilsl 100
                 +++  l+llll s i+  ++++++ +   +
  EHU01276.1  89 TFNAKLMLLLLTSGILLTATWFNPSWHSLF 118
                 67889999*******999988877665555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
        MatE 124 alalqlvlsgilrgagktkvplyislislllniplny 160
                 + + ++ +   ++g +k   +++i+ +++ + ipl++
  EHU01276.1 128 LVGSLFSFGWLMQGFEKLGKTAMIATFGNFCAIPLTF 164
                 4445555666678888888888888899999999887 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 4.1e-11
        MatE  17 tllvgrl.gskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqdeevlelakry 114
                 +++++++ +   ++ ++ a ++     +++  +++a  ++v++ +G  +  +a  a+r++l+l+++lsl i+++++lf++q +sl+  ++  l+ a  +
  EHU01276.1 236 VVILASFtSHYMVGIYNGADRLRKAANSVPEQIGSAFFPRVSHLFGRDK-AAAVAATRKSLMLSFGLSLSIVIFTWLFADQVVSLLLGKD-FLPSADVL 332
                 555555556667777777777777777888889*************887.889999******************************8877.89999999 PP

        MatE 115 lrililgipalalqlvlsgilrgagktkvplyislislllniplny 160
                   +++ ++++++ + +   il   g ++  +++++++ ++n+p++ 
  EHU01276.1 333 RVFVLCFLFGNIAYPAGLQILIPHGLARQRMMVMMVAGVVNVPVCC 378
                 99999999****************************99*****985 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.5
        MatE 122 ipalalqlvlsgilrgagktkvp 144
                 +++ a ++vl+ +l ++g++ ++
  EHU01276.1 386 AIGAAWSMVLAEVLVCIGIFGIM 408
                 56667777777777777776555 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.7     0.034   1.5e+02      52     129 ..      42     123 ..      33     137 .. 0.50
   2 ?    2.3   0.5     0.035   1.5e+02      16      50 ..     133     167 ..     118     171 .. 0.82
   3 ?   -1.6   1.8      0.56   2.5e+03      28      58 ..     173     203 ..     147     205 .. 0.73
   4 ?   -0.4   0.9      0.24   1.1e+03      89     134 ..     293     346 ..     283     352 .. 0.65
   5 !   29.7   7.5   1.2e-10   5.5e-07       2      78 ..     332     409 ..     331     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.034
  Polysacc_synt_C  52 lfgivGaaiatvl..allvvavlnlyalrrllgikl...ellrrllkpllaalvmgivvylllllllgllllaal.alllavlv 129
                      ++gi+  aia vl  + +    +n+y  + + +++      +++l+   + a +m ++++    ll  +++++++ +l++ +l+
       EHU01276.1  42 HMGILALAIACVLycSTISDWGFNVYTTKDIAHHRDdkaR-VTQLFWSTFNAKLMLLLLT-SGILLTATWFNPSWhSLFFIILA 123
                      6777666665554216666678888888888888888863.3333333333334444322.22222222222233344444443 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.035
  Polysacc_synt_C  16 tvlssiLqglgrqkialkalvigalvklilnllli 50 
                        ++ ++qg  +  ++++++ +g ++ + l++ll+
       EHU01276.1 133 FSFGWLMQGFEKLGKTAMIATFGNFCAIPLTFLLV 167
                      457789***************************98 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.56
  Polysacc_synt_C  28 qkialkalvigalvklilnllliplfgivGa 58 
                      +++a+++  +  +++ i++l ++ ++ ++Ga
       EHU01276.1 173 TWLAALIPGAVSIINAIITLKFVLEMKVIGA 203
                      5566666666677888888888887777776 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.24
  Polysacc_synt_C  89 rrllkpllaalvmgivvylllllllglllla.......al.alllavlvgalvY 134
                      ++l+  + ++l ++i ++l++ ++++lll+         l +++l+ l+g ++Y
       EHU01276.1 293 KSLMLSFGLSLSIVIFTWLFADQVVSLLLGKdflpsadVLrVFVLCFLFGNIAY 346
                      556666667777777777777777777776666666654466777777777766 PP

  == domain 5  score: 29.7 bits;  conditional E-value: 1.2e-10
  Polysacc_synt_C   2 Lailalsiiflsls.tvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalr 78 
                      L++++l ++f  ++   + +iL++ g ++  +++++++ +v++ +  ll  +fg++Gaa+++vla+++v++ ++ ++ 
       EHU01276.1 332 LRVFVLCFLFGNIAyPAGLQILIPHGLARQRMMVMMVAGVVNVPVCCLLAWKFGAIGAAWSMVLAEVLVCIGIFGIMV 409
                      66677777776666567889***************************************************9865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3133.52
//
Query:       EHU01277.1  [L=336]
Description: dihydro-orotate oxidase, FMN-linked [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-90  301.2   0.1    8.4e-90  300.9   0.1    1.0  1  DHO_dh        Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
       0.17   11.5   0.0       0.24   10.9   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   0.1   9.4e-94   8.4e-90       4     290 ..      47     335 ..      45     336 .] 0.96

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 9.4e-94
                 EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC.CEEEEEE CS
      DHO_dh   4 tkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeekkelginls 102
                 ++++gl+f n +glAaG+dk++e+i+++ ++gfg++e+g+vtp++q+Gn+kPr+frl+e + ++N++G+nn G+d+++e+++k r +      lgin++
  EHU01277.1  47 VTCMGLTFDNALGLAAGLDKNAECIDAFGAMGFGFVEVGTVTPRAQPGNDKPRMFRLVEAEGIINRMGFNNLGVDNLVENVKKSRFK----GVLGINIG 141
                 789*******************************************************************************99977....369***** PP

                 E-TTS..S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH........SSEEEEEE-SSSSHHHHHHHHHHHHHHTEC CS
      DHO_dh 103 kakkt..enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs........kvpvlvKlaPdltdeekkdiadvllelkld 191
                 k+k+t  e+  ddy  +++ki   a+++++N+SsPntpglr+lq+ e+l   l++ +++ +         vpv vK+aPdl++ e +++ad l+++++d
  EHU01277.1 142 KNKDTpvEQGKDDYLLCMEKIYAHAGYIAINISSPNTPGLRSLQYGEALDDLLSSIKSKQKelekrhlkYVPVAVKIAPDLSEDELIQVADSLVRHQID 240
                 *****99999*********************************************999999999****99***************************** PP

                 EEEE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHH CS
      DHO_dh 192 giivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikke 290
                 g+i+tNtt+ r+   ++  k  +  ++GGlsG+++++++++vi++l+++l++++piIgvGGi s   a eki aGA+lvq+y++++++gp ++k+i   
  EHU01277.1 241 GVIATNTTLDRT--LVNGLKYSE--EAGGLSGRPVQSRSTAVIQRLSQELQGRLPIIGVGGIDSLTAAREKIAAGATLVQIYSGFIYKGPGLIKDIVTH 335
                 ************..555555555..59******************************************************************999765 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.7e-05      0.24     151     230 ..     203     312 ..     158     333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.7e-05
                   H..-TTCEECC..EEESTTTCHHHHHHHHHHHHHTTTECEEEESSCCHHH.........................CHHHHHHH..TTTTSTEEEEEE CS
  Peripla_BP_4 151 e..ypgikiva..evaganwdaekaqqalealltanpldgilaandgmae.........................galealea..aglagkvvvtgq 216
                   e  +  +k+v+  + ++++ ++++  q +++l +++ +dg++a+n++  +                         ++++ l++  +g+ +++ v g+
    EHU01277.1 203 EleKRHLKYVPvaVKIAPDLSEDELIQVADSLVRHQ-IDGVIATNTTLDRtlvnglkyseeagglsgrpvqsrstAVIQRLSQelQGRLPIIGVGGI 298
                   142247777775455588999999999999999988.********9999999**********9999999999999999999995455555555**** PP

                   S-HHHHHHHHHTTS CS
  Peripla_BP_4 217 DatpealeaikdGt 230
                   D+  +a+e i++G 
    EHU01277.1 299 DSLTAAREKIAAGA 312
                   *********99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2548.42
//
Query:       EHU01278.1  [L=180]
Description: uncharacterized DUF1379 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-71  239.5   0.0    1.6e-71  239.3   0.0    1.0  1  ZapC      Cell-division protein ZapC


Domain annotation for each model (and alignments):
>> ZapC  Cell-division protein ZapC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.3   0.0     9e-76   1.6e-71       1     168 [.       2     170 ..       2     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.3 bits;  conditional E-value: 9e-76
        ZapC   1 llkPddkWrWyfdeeedrLmLdLgedmvflsrykakmLipdafkeseFsvddaalYieleeklkelelseeqrvelvLnalaakrflkPlmpkSWfFet 99 
                 ++kPdd+WrWy+d+e+dr+mLdL+++m+f+sry++kmL+pdaf+es F+vddaalY+++eek+++ +ls++qr+elvLnal+a+rflkPlmpkSW+F++
  EHU01278.1   2 KIKPDDNWRWYYDAEHDRMMLDLADGMLFRSRYARKMLTPDAFTESGFCVDDAALYFTFEEKCRQSPLSSNQRAELVLNALVAARFLKPLMPKSWHFSA 100
                 58************************************************************************************************* PP

        ZapC 100 qseevkpeegelve..lkeekeeakflvveageqaslcllvseelaLsdsktlkqfdaiKvmndrllplke 168
                 +++ ++p  ge+ve  l e++e+a++lvve+g++a+lcll++++l+L++ k ++++daiKvmndrl+p ++
  EHU01278.1 101 HRQPMQPAVGEMVEvtLAENGEQARLLVVENGDNAALCLLAQPALTLAG-KGMVLGDAIKVMNDRLQPHQQ 170
                 **************999*******************************9.******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1368.67
//
Query:       EHU01279.1  [L=369]
Description: putative 2Fe-2S cluster-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-28   98.1   0.0    5.2e-28   97.3   0.0    1.4  1  MOSC_N    MOSC N-terminal beta barrel domain
    3.3e-28   98.3   0.0    5.4e-28   97.6   0.0    1.4  1  MOSC      MOSC domain
    4.1e-13   49.1   1.0      7e-13   48.3   0.2    1.8  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.052   13.6   0.1       0.13   12.3   0.1    1.7  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> MOSC_N  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   1.2e-31   5.2e-28       1     118 [.       1     115 [.       1     117 [. 0.96

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.2e-31
      MOSC_N   1 sarvssLyvyPiKsckgvslseaevtaaGllalDReflvvdedGkfltqrrePrlalirteldeedglLtltapgrkdlevslakakasleevsvlels 99 
                 + ++s+L+++P+Ks++g+++s+a+  ++Gl+ +DR f+v+++dG+f+t+r++P+++ +++++  + + L l+ap++++  +++a+++++++ ++v++ +
  EHU01279.1   1 MITLSRLFIHPVKSMRGLQVSHAWAANSGLT-FDRIFMVTEPDGTFITARQFPEMVQFTPAV--TPEGLFLQAPDGSQSLIRFADFTQTEAPTEVWGNT 96 
                 56899************************96.******************************..799******************************** PP

      MOSC_N 100 asgldegdevakwlsdfLg 118
                 ++++ + +++++wls f+ 
  EHU01279.1  97 FTARIAPEAINQWLSAFFP 115
                 ***************9985 PP

>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.2e-31   5.4e-28       4     130 ..     139     262 ..     136     263 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 1.2e-31
                 ---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEES-.......-TTT-BTT-E.EEETT..................EE----THHHHHT CS
        MOSC   4 ihggdekavllisresldalneelkegrsveldpgrfreNivvggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga..rprepcktlakfr 100
                 + ++d  ++ll++ +sl++l+++   ++  ++++++fr+N+vv+ga+a++Ed+w+e+++g+++f + ++c+Rc  ++v  e+g+   + +p++tl+ fr
  EHU01279.1 139 LGFADGYPYLLVNNASLRDLQQRC--PA--SVRVEQFRPNLVVSGAPAWDEDNWAEVTVGQVHFAVPKPCGRCVFTTVSVENGQkhPDGQPLATLQGFR 233
                 67999*******************..65..58999*************************************************99999*********9 PP

                 THHHHHHHHT---EEEEEEE-EEEETTS-E CS
        MOSC 101 rvdkrvkgkgrfGvylrvleegtvrvGdev 130
                 + +++  g + fG +l  l++g++rvGd v
  EHU01279.1 234 TAQDG-SGDIDFGLNLIALNSGIIRVGDDV 262
                 87755.578*******************99 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   4.9e+03      40      52 ..     204     216 ..     202     230 .. 0.59
   2 !   48.3   0.2   1.6e-16     7e-13       3      77 ..     294     362 ..     292     363 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
                 SSTTEEEEEESCE CS
        Fer2  40 CgtClvevlegev 52 
                 Cg C+ + ++ e+
  EHU01279.1 204 CGRCVFTTVSVEN 216
                 9999877665443 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 1.6e-16
                 TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2   3 idgkevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtiv 77 
                 i  ++++++  d++++ll+ +e + g  ipysC++g Cg+C++++++g+v + ++++++++       +l+C +i+
  EHU01279.1 294 ISYQGQTFS-GDNQQILLEQLEAQ-GFRIPYSCRAGLCGSCKITLVAGKVkPLKQSAIREDG-----TILSCSCIP 362
                 555778896.588888*****988.*************************877766666664.....78*****98 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.8e-05      0.13      46      77 ..     318     350 ..     278     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
      Fer2_3  46 lafrasCregiCGscava.inGkptlaCtatik 77 
                 +   +sCr+g CGsc ++ + Gk++ + +  i+
  EHU01279.1 318 FRIPYSCRAGLCGSCKITlVAGKVKPLKQSAIR 350
                 34459**********985378888877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 3160.63
//
Query:       EHU01280.1  [L=704]
Description: 23S rRNA m2G2445 methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-64  217.1   0.0    9.6e-61  204.9   0.0    2.4  2  UPF0020          Putative RNA methylase family UPF0020
    1.1e-23   83.9   0.1    2.2e-23   82.9   0.1    1.5  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
    1.1e-14   54.7   0.0    1.8e-14   54.0   0.0    1.3  1  THUMP            THUMP domain
      1e-13   51.3   0.0    9.1e-10   38.5   0.0    3.5  3  Cons_hypoth95    Conserved hypothetical protein 95
    1.4e-10   41.2   0.0    5.8e-05   22.9   0.0    3.4  3  Methyltransf_31  Methyltransferase domain
    3.3e-09   37.3   0.0    5.4e-05   23.8   0.0    3.7  4  Methyltransf_25  Methyltransferase domain
    8.3e-09   36.0   0.0    5.9e-05   23.6   0.0    3.0  2  Methyltransf_11  Methyltransferase domain
     0.0022   17.6   0.0      0.031   13.8   0.0    2.4  3  Methyltransf_15  RNA cap guanine-N2 methyltransferase
  ------ inclusion threshold ------
       0.16   11.2   0.5        6.1    6.0   0.0    3.0  3  N6_Mtase         N-6 DNA Methylase


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.0   4.8e-64   9.6e-61       1     196 [.     162     375 ..     162     376 .. 0.96
   2 !    9.8   0.0    0.0003      0.59      79     169 ..     563     656 ..     526     666 .. 0.80

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 4.8e-64
                 -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH.....HH--EEE CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear.....aelklyg 81 
                 RgyR+ +g+apLke+LAaa+v+++gw+ ++pl+DPmCGsGt+lIEaal++ ++apgllr+++++             +k+ a+++ar      ++++yg
  EHU01280.1 162 RGYRQQTGQAPLKENLAAAIVMRSGWQTTTPLIDPMCGSGTLLIEAALMACDRAPGLLRSQWGFtawagfneslwldVKRDAQARARagtavCQARFYG 260
                 9****************************************************************************9999999998877544555*** PP

                 EES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC-- CS
     UPF0020  82 sDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekalee 178
                 +D++ rv++ a+ Na++agv +l +f q d  kL+  l++g  +++++npPYGerl+s++al +L+s+++r +k++++g  ++++l+s++ +l ++l+ 
  EHU01280.1 261 FDNNGRVLEWAKANARRAGVFELFTFGQQDLLKLNnpLENGVTGTVLSNPPYGERLESEPALIALHSQLGRLMKQHFAG--WNLSLFSASPELLSCLQL 357
                 ***********************************9999999*************************************..****************** PP

                 -ESEEEEEEETTEEEEEE CS
     UPF0020 179 ralrkvkeknvklglllk 196
                 ra r++k+kn++l++++k
  EHU01280.1 358 RADRQFKAKNGPLDCVQK 375
                 ***************997 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0003
                 EEEEES-HHHHHHHHHHHHHTT-GGGEE.EEE--GGG.--STTS---EEEE---...-------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESS CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdlie.fsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltsen 169
                    +D+ r +++ a++N++  g++++ + +  ad  + L+++++++d+i  +pP     +r+++  ++++ +  ++r lkr lr+gg   +++s+n
  EHU01280.1 563 TTTVDMSRTYLEWAERNLRLNGLTGRQHrLLHADCLSwLNETDENFDLIFIDPPtfsNSKRMEESFDVQRDHMMLMRNLKRLLRKGG--TIMFSNN 656
                 56799*****************98875525555655425588889*********6444789999999******************44..4444444 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1   1.1e-26   2.2e-23      61     240 ..     474     657 ..     429     667 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.1e-26
  Methyltrans_SAM  61 rslvlqhryadgaasev.lvgeldespvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytcgfsvaaiaggaskvvnvd 153
                       +l+l+ r +++  +++    e  + ++v+e   ++ +++    ++glfld r  r+ + + +++k+ lnlfayt   sv a  gga+    vd
       EHU01280.1 474 SRLILKTRERQKGKAQYqKLSEKGDYFEVQEFNARFLVNLTDYLDTGLFLDHRIARKMLGQMSQGKDFLNLFAYTGTASVHAGLGGARSTTTVD 567
                      567888887776555541567889999******************************************************************* PP

  Methyltrans_SAM 154 margslnkgrdnhrlnghdlrrvsflgydifkswgkikksgpydlviidppsfqkg.....sfaltkdykkilrrlpellveggevlacvns 240
                      m+r+ l+    n rlng   r+  +l  d + sw +     ++dl+ idpp+f +      sf + +d+  ++r l  ll +gg+++   n+
       EHU01280.1 568 MSRTYLEWAERNLRLNGLTGRQHRLLHADCL-SWLN-ETDENFDLIFIDPPTFSNSkrmeeSFDVQRDHMMLMRNLKRLLRKGGTIMFSNNK 657
                      *******************999999998876.8866.45679***********753233339************************987776 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   9.3e-18   1.8e-14      17     143 ..      21     153 ..      10     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 9.3e-18
                 EEEETTEEEEECTEEEEEETHHHHHHHHHTSTTECEEEEE.EEEEESSHHHHHHHHHHHHHHHHHHCT-EEEEEEEESSSTS...SSHHHHHHHHHHHH CS
       THUMP  17 veagkgrivvelkgekpeedeellkealekargiqrvipv.cevceadledileaakeivkkkfeeeketFaVrvkrrgkhf...eftsreinrevGka 111
                    g ++++v+++g++++ d++ +++ l ++r+++r++ + +ev  ++  d++  ++ i+++  ++ ++tF V+++  ++ +   +f++ ++++++++ 
  EHU01280.1  21 DALGAQDLQVVQGGVHFKADDRVMYQSLMWSRLASRILLPlTEVGVYSDLDLYLGVQGIDWPAAFGSDKTFVVHFNGTNEAIrnsQFGALRVKDAIVDS 119
                 45578899******************************999999999*********************************99***************** PP

                 HHCCTT..-EE-SSS-SEEEEEEEETTEEEEEEE CS
       THUMP 112 ivektg..lkVdlenPdivvrveiikdkayisid 143
                 + ++    + Vd e+ +i+++v++++d+a i +d
  EHU01280.1 120 FTRRNLprPDVDREQAEIRINVWLDDDRASIALD 153
                 *****************************99876 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.048        96      45      60 ..     193     208 ..     181     224 .. 0.86
   2 !    5.7   0.0    0.0053        11      70     137 ..     261     326 ..     253     366 .. 0.78
   3 !   38.5   0.0   4.6e-13   9.1e-10      35     145 ..     531     640 ..     528     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.048
                    EEETT-TTSHHHHHHH CS
  Cons_hypoth95  45 vLDlfaGsGalglEAl 60 
                    ++D  +GsG+l +EA+
     EHU01280.1 193 LIDPMCGSGTLLIEAA 208
                    699************7 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0053
                    EES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHH CS
  Cons_hypoth95  70 vekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlelle 137
                    ++++ ++++  k+n ++ ++ e   ++ +++l +l++   ++++   v  +PPy + l  e +l +l+
     EHU01280.1 261 FDNNGRVLEWAKANARRAGVFE-LFTFGQQDLLKLNNP-LENGVTGTVLSNPPYGERLESEPALIALH 326
                    789999999999******9885.888888888888777.677899**********9987666655554 PP

  == domain 3  score: 38.5 bits;  conditional E-value: 4.6e-13
                    HHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--S.SSTTCH. CS
  Cons_hypoth95  35 ilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPP.yakelli 129
                    +l++  +g+ +L+lfa +G+ ++ A   ga++ + v+++++ ++  ++nl+  +l+++++ l + +  ++l++  ++e+fd++f+DPP + +++ +
     EHU01280.1 531 MLGQMSQGKDFLNLFAYTGTASVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRQHRLLHADCLSWLNE--TDENFDLIFIDPPtFSNSKRM 624
                    77888899*************************************************9999999999999999..6789*********77777778 PP

                    HHHHHHHHHTT-EEEE CS
  Cons_hypoth95 130 eevlelleekkllken 145
                    ee ++  +++ +l +n
     EHU01280.1 625 EESFDVQRDHMMLMRN 640
                    8888877777766644 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.024        47       5      24 ..     191     210 ..     188     218 .. 0.82
   2 !   10.3   0.0   0.00022      0.45      27      68 ..     254     296 ..     243     334 .. 0.86
   3 !   22.9   0.0   2.9e-08   5.8e-05      31     114 ..     563     666 ..     535     701 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.024
  Methyltransf_31   5 lrvlDlGCGtGeltfelaee 24 
                      ++++D+ CG+G+l++e+a  
       EHU01280.1 191 TPLIDPMCGSGTLLIEAALM 210
                      6899*************954 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
  Methyltransf_31  27 pkaevvGiDiseeaielArenaqklg.ldnveFeqgdieelek 68 
                       +a+++G+D++ +++e A++na++ g ++ ++F q+d  +l++
       EHU01280.1 254 CQARFYGFDNNGRVLEWAKANARRAGvFELFTFGQQDLLKLNN 296
                      3899*********************944599*****9999874 PP

  == domain 3  score: 22.9 bits;  conditional E-value: 2.9e-08
  Methyltransf_31  31 vvGiDiseeaielArenaqklgld..nveFeqgdiee.leklledekfDlilsn...........evlnaladpdkileeiervlkpggillie 110
                       + +D+s + +e A+ n++ +gl+    ++ ++d  + l+   +de+fDli+ +           e ++ + d    +++++r+l++gg ++ +
       EHU01280.1 563 TTTVDMSRTYLEWAERNLRLNGLTgrQHRLLHADCLSwLN--ETDENFDLIFIDpptfsnskrmeESFDVQRDHMMLMRNLKRLLRKGGTIMFS 654
                      688*********************99999********999..569*********7777777777766699999999999*************98 PP

  Methyltransf_31 111 dpr........l 114
                      + +        +
       EHU01280.1 655 NNKrgfkmdldG 666
                      877555555551 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.3   6.6e+03       3      16 ..     195     208 ..     194     216 .. 0.81
   2 !    8.7   0.0    0.0014       2.8      21      70 ..     255     308 ..     241     336 .. 0.76
   3 ?   -1.3   0.0       1.9   3.7e+03      56      95 ..     361     400 ..     346     401 .. 0.80
   4 !   23.8   0.0   2.7e-08   5.4e-05      19      97 .]     557     649 ..     542     649 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.3
                      EET-TTSHHHHHHH CS
  Methyltransf_25   3 dlGcGtGrltlala 16 
                      d  cG+G+l++++a
       EHU01280.1 195 DPMCGSGTLLIEAA 208
                      557*****999887 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                      SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEE CS
  Methyltransf_25  21 kakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvs 70 
                      +a+++g+D + + le a+++a+++g+   ++f q+d+ +l+  +e+g    v+s
       EHU01280.1 255 QARFYGFDNNGRVLEWAKANARRAGVfeLFTFGQQDLLKLNnpLENGVTGTVLS 308
                      799************************999*******98852155555555555 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.9
                      CGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25  56 edlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      ++++ ++g  D+v  +++l+  sde++ ++ +  a+ L++
       EHU01280.1 361 RQFKAKNGPLDCVQKNYQLSAASDERASQIAEDYANRLRK 400
                      5678899999999999999999999999999888888875 PP

  == domain 4  score: 23.8 bits;  conditional E-value: 2.7e-08
                      S.TSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCG.BSSSTTTEEEEEE.......EST.GGG.SS.HHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  19 l.gkakvtgvDiseemleaareraeeegl...nvefvqgdaed.lpfedgsfDlvvs.......sga.lhh.ls.dedlekalkeiarvLkpgG 97 
                      l g+ + t vD+s ++le a+++++ +gl   + +++++d+ + l++ d+ fDl+++       s   ++  ++ ++d+  ++++++r+L++gG
       EHU01280.1 557 LgGARSTTTVDMSRTYLEWAERNLRLNGLtgrQHRLLHADCLSwLNETDENFDLIFIdpptfsnS-KrMEEsFDvQRDHMMLMRNLKRLLRKGG 649
                      225899*******************99999999********885789**********88777642.22443344134667899**********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0011       2.3      18      67 ..     254     308 ..     241     310 .. 0.80
   2 !   23.6   0.0     3e-08   5.9e-05      18      96 .]     559     653 ..     547     653 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                      T.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT..SS-TT-EEEEEE CS
  Methyltransf_11  18 g.arvvgvDlskemlklakekaseegl..kvefvvadaekl..pfednsfDlvvs 67 
                      + ar +g+D + ++l++ak++a+++g+   ++f ++d+ kl  p+e++    v+s
       EHU01280.1 254 CqARFYGFDNNGRVLEWAKANARRAGVfeLFTFGQQDLLKLnnPLENGVTGTVLS 308
                      3689**********************99988999999999865677766666665 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 3e-08
                      T.SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCC.TSS-TT-EEEEEEES.-CCC-C..........CHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  18 g.arvvgvDlskemlklakekaseegl...kvefvvadaek.lpfednsfDlvvsse.vlhhve..........dpekalkeiaRvLkpgGllv 95 
                      g +++++vD+s + l++a+++ + +gl   + ++++ad+ + l+  d+ fDl+++   ++ + +          d++ ++++++R+L++gG+++
       EHU01280.1 559 GaRSTTTVDMSRTYLEWAERNLRLNGLtgrQHRLLHADCLSwLNETDENFDLIFIDPpTFSNSKrmeesfdvqrDHMMLMRNLKRLLRKGGTIM 652
                      46789*************************889*******978***********98864444433445555556*****************998 PP

                      E CS
  Methyltransf_11  96 i 96 
                      +
       EHU01280.1 653 F 653
                      6 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         3   5.9e+03       4      19 ..     193     208 ..     191     211 .. 0.79
   2 ?    0.4   0.0      0.21   4.1e+02      24      82 ..     257     313 ..     249     315 .. 0.88
   3 !   13.8   0.0   1.6e-05     0.031      23      98 ..     561     635 ..     540     659 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3
  Methyltransf_15   4 ilDlfsGaGGnviqfa 19 
                      ++D+++G+G   i+ a
       EHU01280.1 193 LIDPMCGSGTLLIEAA 208
                      79*******8777655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.21
  Methyltransf_15  24 kviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpPwG 82 
                      + ++ + n + l+ a+ Na+  gv +  t+ + d+++l + l+  ++    v+  pP G
       EHU01280.1 257 RFYGFDNNGRVLEWAKANARRAGVFELFTFGQQDLLKLNNPLENGVT--GTVLSNPPYG 313
                      668999999**************************999999888887..8999999988 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.6e-05
  Methyltransf_15  23 ekviaieinleklacaqhNaevYgv.sdkitlvlgdvfellaklklekikvdlvflSpPwGGpsYkkqekfdlkk.kl 98 
                      +++ ++++++  l+ a++N ++ g    +  l ++d+++ l+++ + +  +dl+f+ pP+   s + +e fd+++ ++
       EHU01280.1 561 RSTTTVDMSRTYLEWAERNLRLNGLtGRQHRLLHADCLSWLNETDE-N--FDLIFIDPPTFSNSKRMEESFDVQRdHM 635
                      56889*******************944556799********99543.3..59*********************66322 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0031       6.1      48      68 ..     191     211 ..     175     322 .. 0.61
   2 ?   -3.7   0.1       2.8   5.5e+03     261     304 ..     383     435 ..     373     438 .. 0.55
   3 ?    1.6   0.0     0.065   1.3e+02      87     138 ..     570     621 ..     561     640 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0031
    N6_Mtase  48 esvyDpacGsggllvqaekvl 68 
                 +  +Dp cGsg ll++a+ + 
  EHU01280.1 191 TPLIDPMCGSGTLLIEAALMA 211
                 4578***********998654 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.8
    N6_Mtase 261 teediekildtykek....skevdkfskv..veleeiaen...dynlnvgryv 304
                 ++e  ++i++ y ++     k+ dk++++  +e + i +    dyn  v+ry+
  EHU01280.1 383 SDERASQIAEDYANRlrknLKKLDKWARQegIECNRIYDAdlpDYNVAVDRYA 435
                 55666677777777764444555555554223334444432226777777775 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.065
    N6_Mtase  87 ettyrLakmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNpp.fnqk 138
                 +t  + a+ Nl l g    + +  ++d l+  +++ d++fd +   pp f+++
  EHU01280.1 570 RTYLEWAERNLRLNGLTGRQHRLLHADCLSWLNET-DENFDLIFIDPPtFSNS 621
                 555667899**********999*******998888.*******9999856665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5245.39
//
Query:       EHU01281.1  [L=641]
Description: DNA-binding ABC ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-50  170.3   0.2    1.6e-23   83.7   0.0    3.2  3  ABC_tran       ABC transporter
    4.2e-24   84.6   3.2    2.4e-23   82.2   3.2    2.4  1  ABC_tran_CTD   ABC transporter C-terminal domain
    1.8e-19   70.7   4.0    0.00083   19.2   0.3    4.6  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    3.3e-11   43.0   0.1    0.00036   20.1   0.0    4.1  2  SMC_N          RecF/RecN/SMC N terminal domain
    1.9e-10   40.6   1.5    1.9e-10   40.6   1.5    2.7  2  ABC_tran_Xtn   ABC transporter
    2.1e-09   37.6   0.1     0.0017   18.1   0.0    3.1  3  AAA_15         AAA ATPase domain
    2.5e-09   37.5   3.0    0.00012   22.4   0.1    4.1  2  AAA_22         AAA domain
    3.1e-09   37.4   4.1    5.6e-07   30.1   0.1    3.4  3  AAA_16         AAA ATPase domain
    7.3e-08   32.0   0.0     0.0057   16.4   0.0    2.8  2  AAA_29         P-loop containing region of AAA domain
      2e-07   31.7   8.2      0.054   14.0   0.0    3.8  3  AAA_23         AAA domain
    2.6e-07   30.7   0.0     0.0003   20.8   0.0    2.6  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
    5.8e-07   29.6   0.0      0.039   13.9   0.0    2.6  2  RsgA_GTPase    RsgA GTPase
    1.4e-06   27.3   0.7       0.15   10.6   0.0    3.2  3  AAA_13         AAA domain
    2.2e-06   27.7   0.3      0.012   15.5   0.4    2.9  2  NACHT          NACHT domain
    5.6e-06   26.2   0.1       0.17   11.6   0.0    3.7  3  AAA_30         AAA domain
    6.3e-06   26.7   0.0     0.0066   16.9   0.0    2.8  2  AAA            ATPase family associated with various cellular
    1.3e-05   25.0   0.0        0.3   10.8   0.0    3.3  3  AAA_24         AAA domain
    1.4e-05   25.3   0.9      0.019   15.1   0.0    3.0  2  AAA_33         AAA domain
    1.8e-05   24.3   0.0       0.12   11.9   0.0    2.3  2  AAA_7          P-loop containing dynein motor region
    1.8e-05   24.7   0.0       0.15   12.2   0.0    2.7  2  MMR_HSR1       50S ribosome-binding GTPase
    2.9e-05   24.1   0.2       0.04   13.8   0.0    3.1  3  ATPase_2       ATPase domain predominantly from Archaea
    4.5e-05   23.8   0.0       0.13   12.6   0.0    3.0  2  RNA_helicase   RNA helicase
    8.2e-05   22.9   0.0      0.049   13.9   0.0    3.0  2  AAA_28         AAA domain
    8.2e-05   22.4   0.1       0.31   10.8   0.1    2.5  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
    0.00011   22.3   0.4        0.2   11.6   0.0    3.4  3  AAA_5          AAA domain (dynein-related subfamily)
    0.00014   21.2   0.4        2.2    7.5   0.0    3.4  3  Zeta_toxin     Zeta toxin
    0.00015   21.1   0.0       0.43    9.7   0.0    2.5  2  NB-ARC         NB-ARC domain
    0.00015   22.3   0.1        0.2   12.2   0.0    3.1  2  AAA_18         AAA domain
    0.00022   20.9   0.0        1.2    8.7   0.0    3.5  3  AAA_25         AAA domain
    0.00029   21.0   0.0       0.63   10.3   0.0    2.7  2  Roc            Ras of Complex, Roc, domain of DAPkinase
    0.00029   20.9   0.0      0.064   13.3   0.0    3.0  2  AAA_14         AAA domain
    0.00041   20.1   0.0        1.2    8.8   0.0    2.9  2  IstB_IS21      IstB-like ATP binding protein
    0.00043   20.4   1.7         13    5.8   0.0    3.7  3  DUF87          Helicase HerA, central domain
    0.00078   19.2   0.0       0.13   11.9   0.0    2.3  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    0.00083   18.6   0.0       0.68    9.0   0.0    2.5  2  DUF815         Protein of unknown function (DUF815)
     0.0013   18.6   0.1      0.055   13.4   0.0    2.5  2  MobB           Molybdopterin guanine dinucleotide synthesis p
     0.0017   17.5   0.0      0.029   13.4   0.0    2.3  2  T2SSE          Type II/IV secretion system protein
     0.0029   17.4   0.0        0.4   10.4   0.0    2.3  2  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
     0.0036   17.2   1.7       0.46   10.4   0.0    3.1  3  NTPase_1       NTPase
     0.0061   16.2   0.0          1    8.9   0.0    3.1  3  cobW           CobW/HypB/UreG, nucleotide-binding domain
     0.0093   15.2   0.3        2.3    7.3   0.0    2.8  3  G-alpha        G-protein alpha subunit
     0.0097   16.0   0.3        0.2   11.7   0.0    2.9  3  Dynamin_N      Dynamin family
  ------ inclusion threshold ------
      0.011   15.6   0.0       0.26   11.2   0.0    2.3  2  Rad17          Rad17 P-loop domain
      0.012   14.5   1.4       0.93    8.3   0.1    3.1  3  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.021   15.2   0.4       0.21   11.9   0.3    2.6  2  AAA_19         AAA domain
      0.029   14.0   0.4        1.3    8.6   0.1    2.8  3  SRP54          SRP54-type protein, GTPase domain
      0.031   14.7   1.5        2.7    8.4   0.0    3.8  2  AAA_17         AAA domain
      0.044   12.6   1.9        2.4    6.9   0.0    2.7  3  DLIC           Dynein light intermediate chain (DLIC)
      0.046   12.7   0.0        9.3    5.1   0.0    2.5  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
      0.055   12.6   0.1         13    4.8   0.0    2.9  2  DAP3           Mitochondrial ribosomal death-associated prote
      0.063   12.1   1.2        0.1   11.4   1.2    1.2  1  Fmp27_WPPW     RNA pol II promoter Fmp27 protein domain
      0.098   12.1   0.1         18    4.7   0.0    2.4  2  Arf            ADP-ribosylation factor family
       0.11   11.9   0.0        5.7    6.3   0.0    2.8  2  Mg_chelatase   Magnesium chelatase, subunit ChlI
       0.12   11.8   0.0        2.6    7.4   0.0    2.4  2  Gtr1_RagA      Gtr1/RagA G protein conserved region
       0.12   12.2   7.1        1.3    8.8   0.0    2.7  2  AAA_11         AAA domain
       0.17   11.4   0.1         20    4.7   0.0    2.6  2  FeoB_N         Ferrous iron transport protein B
       0.39   10.7   6.4       0.18   11.8   2.6    2.3  2  Laminin_II     Laminin Domain II
        0.4    9.0   2.0       0.62    8.4   2.0    1.2  1  WDCP           WD repeat and coiled-coil-containing protein f
        2.7    8.0  10.3    2.4e+02    1.7   8.6    3.4  2  Prefoldin_2    Prefoldin subunit
        4.6    4.6  24.4        1.5    6.3   6.3    3.6  4  DUF3584        Protein of unknown function (DUF3584)
        9.9    6.0   9.2         21    5.0   0.4    3.3  3  DivIC          Septum formation initiator


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   1.2e-25   3.5e-23       1     137 []      19     185 ..      19     185 .. 0.74
   2 !   83.7   0.0   5.4e-26   1.6e-23       2     137 .]     336     469 ..     335     469 .. 0.91
   3 ?   -0.5   0.1       5.6   1.6e+03      80     110 ..     539     569 ..     476     622 .. 0.60

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1.2e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.....B-HHHCCHCEEEE-SS--S-TTSBHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.....qeleslrkeigvlpqepqlfpeltvren............... 79 
                 l+n +l+++e+e+v +vG+nGaGKStL+k++ g+   + G+i ++ + +        +++++ +   ++ +  q + e+                    
  EHU01281.1  19 LDNTELHIEENERVCLVGRNGAGKSTLMKIINGEQPLDDGRIIYETDLVVArlqqdPPRNITGSVYDFVAEGVQEQAEH----Lkayhaishqvmedps 113
                 7999**************************************6554433333443322222222222222222222222....0122345555666666 PP

                 ....................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                     + +++i+++l+++gl+   dt +    ssLSgG+ ++ al ral+++p++l+lDEpt+
  EHU01281.1 114 dknlnemarlqgildhhnlwQLESRINDVLQQIGLSP--DTEL----SSLSGGWLRKAALGRALVSNPRVLMLDEPTN 185
                 6666667888899999999989999999999999999..8999....******************************8 PP

  == domain 2  score: 83.7 bits;  conditional E-value: 5.4e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH........HHHTC...HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx........xxxxx...xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren........esdee...ieka 88 
                 ++ s ++++g k+a++G+nG+GK+tLl+l++++lk + G++           ++ ++ e++++ q+ ++l+p++tv +n                + ++
  EHU01281.1 336 NDFSAQVQRGDKIALIGPNGCGKTTLLRLMLQQLKADHGRV-----------HSGTKLEVAYFDQHrAELDPDKTVMDNlaegkqevL---VngkPRHV 420
                 67899************************************...........567899*********************986544443...05559999 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l  l++  ++ +++ +  + LSgG++ r+ lar++l+ ++l++lDEpt+
  EHU01281.1 421 LGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLRPSNLMILDEPTN 469
                 999999999999998888******************************8 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 5.6
                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLS 110
                 + ++++++a +  +  e k++ +k+s+++LS
  EHU01281.1 539 QVTAKAKEANRAAQSAEPKNESAKRSANKLS 569
                 2222233333333333344444444444444 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   3.2   8.1e-26   2.4e-23       1      68 [.     567     635 ..     567     636 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 8.1e-26
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeelyerWeeLe 68 
                   klsy+  rele+l++++e+LE++i el+a +++p+++s+p +k + +  el+++ea+Le++++rWeeLe
    EHU01281.1 567 KLSYNLTRELEQLPQKLEQLEARIGELQASMSHPDFFSQPhDKTQPVLDELAQVEAQLETAFARWEELE 635
                   9************************************9999***************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.8e-06    0.0026       3      31 ..      33      53 ..      32      95 .. 0.74
   2 !   19.2   0.3   2.8e-06   0.00083     232     301 ..     152     215 ..     105     217 .. 0.76
   3 !   19.0   0.0   3.4e-06   0.00099       3      24 ..     349     368 ..     348     398 .. 0.81
   4 !   12.9   0.1   0.00024      0.07     219     299 ..     403     497 ..     368     501 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.8e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdveg 31
                +l+G+Ng+GKS+L++++ +        e+
  EHU01281.1 33 CLVGRNGAGKSTLMKIING--------EQ 53
                79***************54........33 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.8e-06
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 + +++lS G +r +al  al + +   ++l +DEp n+L+ + +  l ++lk+ s     +++ +H+ ++
  EHU01281.1 152 TELSSLSGGWLRKAALGRALVSNP---RVLMLDEPTNHLDIETIDWLETFLKSFSG---SIVFISHDRSF 215
                 345566*******77777777777...***************************99...*******9665 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 3.4e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 +liGpNg+GK++LL+++  l++
  EHU01281.1 349 ALIGPNGCGKTTLLRLM--LQQ 368
                 79*************99..554 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 0.00024
      AAA_21 219 r....................gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +                     + fl ++++  +p+r lS G +    ll+ l+ +++   l ++DEp n L+ + l+ l el++   +  + v+l++H
  EHU01281.1 403 NlaegkqevlvngkprhvlgyLQDFLFHPKRAMTPVRALSGGERNR-LLLARLFLRPS--NLMILDEPTNDLDVETLELLEELIDGY-Q--GTVLLVSH 495
                 0444444445555556667778889999999999**********99.77777777776..8*************9998888888433.3..68999999 PP

      AAA_21 298 Sp 299
                 + 
  EHU01281.1 496 DR 497
                 85 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00026     0.078      26     205 ..      31     219 ..      19     229 .. 0.65
   2 !   20.1   0.0   1.2e-06   0.00036      27     205 ..     348     503 ..     330     516 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00026
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEE........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx........ RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseyki........ 113
                   ++vG+NG+GKs l+  i    Ge+     r    +dl+ +  +++ ++   ++v  ++ +  ++ ++  k    is +v+++ + +  +        
  EHU01281.1  31 RVCLVGRNGAGKSTLMKII---NGEQPLDDGRIIYETDLVVArlQQDPPRNITGSVYDFVAEGVQEqAEHLKAYHAISHQVMEDPS-DKNLnemarlqg 125
                 5689************999...6999988889988899988876666677777888775543333312223333445555544433.222211222333 PP

                 ..TTEEE-H..HHHHHHHHCTT-STT....CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 ..xxxxxxx..xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 114 ..ngkevtk..kevsellesagiske....lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                   + ++  +  + ++++l++ g+s++    +LSgG    +a  L  A+   +p+ + +lDe   +LD + +  + ++lk+ s    ++ is+++ ++++
  EHU01281.1 126 ilDHHNLWQleSRINDVLQQIGLSPDtelsSLSGGWLRKAA--LGRALV-SNPR-VLMLDEPTNHLDIETIDWLETFLKSFS--GSIVFISHDRSFIRN 218
                 33666655445677778888877776666689999654444..444443.3444.567899999999999999999999988..667778888888877 PP

                 - CS
                 x RF
       SMC_N 205 a 205
                 +
  EHU01281.1 219 M 219
                 7 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.2e-06
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk.kevs 124
                  a++GpNG+GK+ ll  +   L      +l++++ +  +h+   + ++   ev+  fd++ ++    +++ +++ ++  +g++e+ +ngk  +    ++
  EHU01281.1 348 IALIGPNGCGKTTLLRLM---LQ-----QLKADHGR--VHS---GTKL---EVAY-FDQHRAE---LDPDKTVMDNL-AEGKQEVLVNGKPRHVlGYLQ 425
                 578999999999998877...33.....45554432..343...3333...3433.4444444...33334555554.455669*****9988745556 PP

                 HHH...HCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 ell...esagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 ++l   ++a+    +LSgGe+      Ll+A    +p+ l++lDe    LD +  + + el++  +    ++ +s++++++ + 
  EHU01281.1 426 DFLfhpKRAMTPVRALSGGERN----RLLLARLFLRPSNLMILDEPTNDLDVETLELLEELIDGYQ--GTVLLVSHDRQFVDNT 503
                 65544344455567*******8....677888889***************************9888..7899999999998876 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   1.5   6.5e-13   1.9e-10       1      76 [.     224     296 ..     224     308 .. 0.88
   2 ?    2.6   3.9      0.46   1.3e+02       5      45 ..     513     553 ..     512     594 .. 0.59

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 6.5e-13
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekp 76 
                   v+l++gkl +++GnY++yle kee+l+ ++ ++++  ++++++e +I++  +  ++ ++ + r++aL+ l + e++
    EHU01281.1 224 VDLDRGKLISWPGNYDAYLEGKEEALRVEEMQNAEFDRKLAQEEVWIRQGIK--ARRTRNEGRVRALKALRR-ERS 296
                   689***********************************************99..89999*********9944.333 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.46
  ABC_tran_Xtn   5 ngklteYkGnYseyleekeerleqqqkayekqqkeikklee 45 
                   ng++ ++ G Y +  +++++ ++q+ +  +k ++  +  ++
    EHU01281.1 513 NGEIGTFVGGYHDAQQQRAAYKQQKTQVTAKAKEANRAAQS 553
                   67788888888888888777666555554444443333333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.8e-06    0.0017      14      44 ..      19      50 ..      18     122 .. 0.93
   2 !   14.3   0.0   8.7e-05     0.026      25      43 ..     347     365 ..     332     412 .. 0.75
   3 ?    1.1   0.3      0.86   2.5e+02     203     261 ..     537     595 ..     509     638 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.8e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileald 44
                l+++e++++e+   +l+G+N++GKS+++++++
  EHU01281.1 19 LDNTELHIEENeRVCLVGRNGAGKSTLMKIIN 50
                67899999999899***************994 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.7e-05
      AAA_15  25 ltvliGkNnsGKSsileal 43 
                    liG+N++GK+++l+++
  EHU01281.1 347 KIALIGPNGCGKTTLLRLM 365
                 789*************988 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.86
      AAA_15 203 kRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk 261
                 k +v+ + +e ++ + ++ +++ + + +++kl+ +lt++l+++  kl++++  ++e  +
  EHU01281.1 537 KTQVTAKAKEANRAAQSAEPKNESAKRSANKLSYNLTRELEQLPQKLEQLEARIGELQA 595
                 33333333333333333333333333344444666666666666666666666644433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0053       1.6       9     122 ..      33     203 ..      27     215 .. 0.47
   2 !   22.4   0.1     4e-07   0.00012       8     127 ..     348     492 ..     342     498 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0053
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka.................................. 70 
                 +++G  G+GK+tl++ +  + + +      + ++v   l+++       +++  +++ +++++++                                  
  EHU01281.1  33 CLVGRNGAGKSTLMKIINGEQPLDDGRIIYETDLVVARLQQDPprnITGSVYDFVAEGVQEQAEHlkayhaishqvmedpsdknlnemarlqgildhhn 131
                 789999999999999888776544333333333332222222212122222333333333333333334444444444444455555555555554444 PP

      AAA_22  71 ..................erlsseell.ealeqalrarav...ielliiDEaqh.lrseealeeLrsllnlsrkg 122
                                   +  +++ l    l++a+  ra    +++l++DE  + l   e + +L ++l+  +++
  EHU01281.1 132 lwqlesrindvlqqiglsPDTELSSLSgGWLRKAALGRALvsnPRVLMLDEPTNhL-DIETIDWLETFLK--SFS 203
                 44444444444444444422233333333344444444334455566666655556.5555555555555..555 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee...................erpevv.......fvtlpsstsskdllrellralglelka.....erlss 75 
                 ++++G+ G+GKTtllr +l+ql+++  + +                    ++++v       + ++ + ++++ +l  l  +l +++ a     +    
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKAD--HGRvhsgtklevayfdqhraelDPDKTVmdnlaegKQEVLVNGKPRHVLGYLQDFLFHPKRAmtpvrALSGG 444
                 789*******************543..333779955555555555555422222224333333333333355555555555555555556555433444 PP

      AAA_22  76 eellealeqalraravielliiDEaqh.lrseealeeLrsllnlsrkgvqliL 127
                 e+ + +l++ + + +   l+i+DE  + l   e le L +l +   ++ +++L
  EHU01281.1 445 ERNRLLLARLFLRPSN--LMILDEPTNdL-DVETLELLEELID--GYQGTVLL 492
                 4444445555555555..99999999999.6666666666666..66666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.031       9.2      25      51 ..      30      56 ..      18     209 .. 0.46
   2 !   30.1   0.1   1.9e-09   5.6e-07      11     161 ..     333     485 ..     329     493 .. 0.67
   3 ?   -0.4   0.2       4.6   1.3e+03      81     132 ..     532     581 ..     512     626 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.031
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                e v l+G  G GKs+l++ +  +   d
  EHU01281.1 30 ERVCLVGRNGAGKSTLMKIINGEQPLD 56
                66889***********98777433333 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.9e-09
      AAA_16  11 qLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala. 106
                 qL++ ++ +v +g+   + l+G+ G+GK++l+r  l++l++d+g + +g+  +    + +++  a++   ++++  l++ +++ +++  +++ ++ l+ 
  EHU01281.1 333 QLANDFSaQVQRGDK--IALIGPNGCGKTTLLRLMLQQLKADHGRVHSGTKLEV---AYFDQhRAELDPDKTVMDNLAEGKQEVLVNGKPRHVLGYLQd 426
                 677777756666664..88***********************999977777777...222333444444445555555555555555555555555558 PP

      AAA_16 107 ..........avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                           +v++l+g e++rl  ll+rl+ + s+    l ++ +   ++d ++l+ll++L + 
  EHU01281.1 427 flfhpkramtPVRALSGGERNRL--LLARLFLRPSN----LMILDEPTNDLDVETLELLEELIDG 485
                 88887777668888888855555..55577734444....5555556789999******999987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 4.6
      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsr 132
                  ++q +++ ++++ ea r++  ++  + +e a  +a+ l + l+r l++l++
  EHU01281.1 532 AYKQQKTQVTAKAKEANRAAQSAE--PKNESAKRSANKLSYNLTRELEQLPQ 581
                 334444443333333333322221..22333333335555555555533322 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-05    0.0057      13      39 ..      20      46 ..      17      49 .. 0.89
   2 !   12.4   0.0   0.00033     0.098      17      39 ..     340     362 ..     333     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+++++i++++ + l+G++G+GKSTl+
  EHU01281.1 20 DNTELHIEENERVCLVGRNGAGKSTLM 46
                677899999999*************97 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00033
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 +++++ + + l+Gp+G GK+Tll
  EHU01281.1 340 AQVQRGDKIALIGPNGCGKTTLL 362
                 566655599*************8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00024     0.071      21      39 ..      31      49 ..      11      51 .. 0.80
   2 !   14.0   0.0   0.00018     0.054      23      38 ..     349     364 ..     331     383 .. 0.88
   3 ?    5.8   1.8     0.061        18     140     198 ..     528     589 ..     472     635 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00024
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                 ++++G NGaGK+T++  i
  EHU01281.1 31 RVCLVGRNGAGKSTLMKII 49
                5799***********9877 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 0.00018
      AAA_23  23 lItGpNGaGKTTildA 38 
                 +++GpNG+GKTT+l+ 
  EHU01281.1 349 ALIGPNGCGKTTLLRL 364
                 678**********985 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.061
      AAA_23 140 qerfeefelkdkke.rleelekeleeledekkllekleqekekek..........eleeleeeleeilke 198
                 q+r++++++k++   + +e++++ + +e +++  ++                   ele+l ++le+++  
  EHU01281.1 528 QQRAAYKQQKTQVTaKAKEANRAAQSAEPKNESAKR--------SanklsynltrELEQLPQKLEQLEAR 589
                 222222222222222222222222222222222222........01222233344555555555554433 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0      0.02         6      19      39 ..      29      49 ..      16      56 .. 0.81
   2 !   20.8   0.0     1e-06    0.0003       8      52 ..     332     380 ..     327     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.02
                TEEEEEEESTTSSHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgl 39
                ++ ++L G  GaGK+tl++ +
  EHU01281.1 29 NERVCLVGRNGAGKSTLMKII 49
                5569**************976 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1e-06
                 HHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT--..----TT CS
        TsaE   8 ealgkklakal..gdvilLeGdLGaGKTtlvrglakalgve..evkSPT 52 
                 ++l++++ +++  gd i+L G+ G+GKTtl r ++++l+ +  +v+S T
  EHU01281.1 332 KQLANDFSAQVqrGDKIALIGPNGCGKTTLLRLMLQQLKADhgRVHSGT 380
                 5667777666667889**********************998899**988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00013     0.039      98     128 ..      27      58 ..       8      66 .. 0.80
   2 !   12.9   0.0   0.00027     0.078      89     132 ..     334     378 ..     285     382 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00013
                  TT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  98 kd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++ + ++lvG  G+GKStL++ +++e+ l  g
   EHU01281.1  27 EEnERVCLVGRNGAGKSTLMKIINGEQPLDDG 58 
                  4448899****************999876655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00027
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                   +++ +++++  + ++l+G+ G GK+tL+  +l++l++  g v +
   EHU01281.1 334 LANDFSAQVQRgDKIALIGPNGCGKTTLLRLMLQQLKADHGRVHS 378
                  4555666665558899******************99998888765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00053      0.15      23      90 ..      36     107 ..      21     138 .. 0.71
   2 !    6.5   0.0    0.0095       2.8      23      51 ..     352     379 ..     335     414 .. 0.77
   3 ?    5.4   1.6      0.02       5.8     366     454 ..     532     598 ..     517     630 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00053
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfangsi.........eitng..eeldirVfNrdFveenlseq.gelkpvftLGee 90 
                 G+NGaGK+tL ++++  +       +  g i         +++++  ++    V+  dFv e ++eq ++lk+   +  +
  EHU01281.1  36 GRNGAGKSTLMKIINGEQ------PLDDGRIiyetdlvvaRLQQDppRNITGSVY--DFVAEGVQEQaEHLKAYHAISHQ 107
                 9*************9954......3444555333333555555552235556799..99999999775668876666655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0095
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfang 51 
                 G NG GKTtL rl+ ++ l++ + +  +g
  EHU01281.1 352 GPNGCGKTTLLRLMLQQ-LKADHGRVHSG 379
                 9***********99885.66777766555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.02
      AAA_13 366 sikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlr 454
                 + k++ +++ +  ++ N+  ++ e + e+a                      +++++k   +l++el++  ++l++le++i eL+++++
  EHU01281.1 532 AYKQQKTQVTAKAKEANRAAQSAEPKNESA----------------------KRSANKLSYNLTRELEQLPQKLEQLEARIGELQASMS 598
                 333333444444444444444444444444......................4444444444444455555555555555555544443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0036       1.1       2      20 ..      31      49 ..      30     104 .. 0.88
   2 !   15.5   0.4   4.2e-05     0.012       3      29 ..     348     374 ..     346     498 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0036
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                 v+l G++G GK+tL++ +
  EHU01281.1 31 RVCLVGRNGAGKSTLMKII 49
                699************9866 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.2e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegkl 29 
                 ++l G++G+GKTtLl+ + +++++++ 
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKADHG 374
                 789****************99998774 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0034         1      17      39 ..      28      50 ..      22      62 .. 0.82
   2 !   11.6   0.0   0.00059      0.17      21     127 ..     348     498 ..     337     501 .. 0.59
   3 ?   -0.9   0.2       3.8   1.1e+03      39      82 ..     530     584 ..     526     631 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0034
      AAA_30 17 gdrvavltGpAGtGKttalkalr 39
                ++  ++l+G+ G+GK+t++k ++
  EHU01281.1 28 ENERVCLVGRNGAGKSTLMKIIN 50
                4556899************9885 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00059
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaA.kvLaeelgieastiakllkrlk..................................... 81 
                  +l Gp G GKtt+l+ + + ++a+ grv+  +  + a  ++ ++el+ + +t+   l + k                                     
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKADHGRVHSGTKLEVAYfDQHRAELD-PDKTVMDNLAEGKqevlvngkprhvlgylqdflfhpkramtpvralsgge 445
                 5689**************888888865665433333222022333322.22222222222222444444444444455556666666666666666667 PP

      AAA_30  82 ......grarlepgtllivDEagm.vdtkqlaallkaaekagakvilvGDerQ 127
                       +r  l+p++l+i DE    +d ++l+ l + ++ ++ +v+lv  +rQ
  EHU01281.1 446 rnrlllARLFLRPSNLMILDEPTNdLDVETLELLEELIDGYQGTVLLVSHDRQ 498
                 77777766677777888888855425777777666677777777777777777 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.8
      AAA_30  39 reaweaaggrviglAptgkaAkv.Laeelgieastiakllkrlk..........g 82 
                 r+a+++++ +v + A +++ A++  + + + + ++ +kl ++l+          +
  EHU01281.1 530 RAAYKQQKTQVTAKAKEANRAAQsAEPKNESAKRSANKLSYNLTreleqlpqklE 584
                 6788888888888887765555414433333333444444333344444445440 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.028       8.2       1      22 [.      32      53 ..      32     107 .. 0.71
   2 !   16.9   0.0   2.2e-05    0.0066       2      30 ..     349     377 ..     348     410 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.028
                EEEESSTTSSHHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavakel 22
                v+l+G  G GK++l+k +  e 
  EHU01281.1 32 VCLVGRNGAGKSTLMKIINGEQ 53
                79***************98884 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.2e-05
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEE CS
         AAA   2 llyGppGtGKTllakavakelgvefleis 30 
                  l+Gp G+GKT+l + + ++l+++  ++ 
  EHU01281.1 349 ALIGPNGCGKTTLLRLMLQQLKADHGRVH 377
                 699*****************997654443 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0019      0.55       3      26 ..      30      54 ..      28     105 .. 0.68
   2 ?   -1.1   0.0       4.3   1.3e+03      17      51 ..     197     236 ..     190     251 .. 0.70
   3 !   10.8   0.0     0.001       0.3       3      22 ..     346     365 ..     344     378 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0019
      AAA_24  3 lkiliyGpsgiGKTtlakel.gpkp 26
                 +++++G +g+GK+tl+k + g++p
  EHU01281.1 30 ERVCLVGRNGAGKSTLMKIInGEQP 54
                699***************9974444 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4.3
      AAA_24  17 tlakelgpkplfidtekGlksldadkfpdie.....swed 51 
                 t++k++  +++fi  ++++ +  a++++d+      sw+ 
  EHU01281.1 197 TFLKSFSGSIVFISHDRSFIRNMATRIVDLDrgkliSWPG 236
                 6677777777777777777777777777766666666655 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.001
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  ki+++Gp+g GKTtl++ +
  EHU01281.1 346 DKIALIGPNGCGKTTLLRLM 365
                 59**************9877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.013       3.8       2      44 ..      32      78 ..      32     135 .. 0.71
   2 !   15.1   0.0   6.4e-05     0.019       3      30 ..     349     378 ..     348     438 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.013
      AAA_33  2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlfgtdqqs 44
                v lvG +G+GKstl + +  +++     ++ ++d +  rl  + +++
  EHU01281.1 32 VCLVGRNGAGKSTLMKIINGEQPlddgRIIYETDLVVARLQQDPPRN 78
                5789**********998866666667667777777777776544443 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.4e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllss 30 
                  l+G++G+GK+tl++ +l++l+    ++ s
  EHU01281.1 349 ALIGPNGCGKTTLLRLMLQQLKadHGRVHS 378
                 689******************944333444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0017      0.49      27      52 ..      23      48 ..      21      60 .. 0.87
   2 !   11.9   0.0   0.00041      0.12      29      60 ..     341     372 ..     329     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0017
       AAA_7 27 elllknkkpvllvGptGtGKtviikd 52
                el+++++  v+lvG  G GK++++k 
  EHU01281.1 23 ELHIEENERVCLVGRNGAGKSTLMKI 48
                7899******************9985 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00041
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkldke 60 
                  ++++ ++ l+Gp G+GKt++++ +l++l+ +
  EHU01281.1 341 QVQRGDKIALIGPNGCGKTTLLRLMLQQLKAD 372
                 6789999*********************9966 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00051      0.15       1      21 [.      31      51 ..      31      70 .. 0.88
   2 !    9.7   0.0     0.003      0.88       1      31 [.     347     378 ..     347     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00051
                EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg 21
                +v++vGr  +GKStL++ + g
  EHU01281.1 31 RVCLVGRNGAGKSTLMKIING 51
                699*************98766 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.003
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpg 31 
                 ++a++G    GK+tL++ ++++ ka  ++ + 
  EHU01281.1 347 KIALIGPNGCGKTTLLRLMLQQlKADHGRVHS 378
                 69******************987776665554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.022       6.4      19      57 ..      28      66 ..      21     146 .. 0.79
   2 !   13.8   0.0   0.00014      0.04      25      53 ..     350     386 ..     339     428 .. 0.71
   3 ?   -1.7   0.4       7.4   2.2e+03      61     114 ..     530     584 ..     521     591 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.022
    ATPase_2 19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyyial 57
                +ne + + G+ g GK++L+k i  ++   d ++iy ++l
  EHU01281.1 28 ENERVCLVGRNGAGKSTLMKIINGEQPLDDGRIIYETDL 66
                45566677***********97766665556688998887 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00014
    ATPase_2  25 iYGpegsGKtaLlkeiienledkdk........yviy 53 
                 + Gp g+GKt+Ll+ ++++l+  +         +v y
  EHU01281.1 350 LIGPNGCGKTTLLRLMLQQLKADHGrvhsgtklEVAY 386
                 56*****************977665234444444444 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 7.4
    ATPase_2  61 siskldefieeeeekkklekalgiavpkaeleeilk.eksklvfkaielllekik 114
                 + ++++++ + + ++k++++a+++a pk+e  + +  + s ++++ +e+l +k++
  EHU01281.1 530 RAAYKQQKTQVTAKAKEANRAAQSAEPKNESAKRSAnKLSYNLTRELEQLPQKLE 584
                 4444444444455566666666666666666554444555555555555555554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.016       4.8       1      18 [.      32      49 ..      32      62 .. 0.90
   2 !   12.6   0.0   0.00045      0.13       2      57 ..     349     403 ..     348     415 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.016
  RNA_helicase  1 iwlyGpsgeGKStlakeL 18
                  ++l+G++g GKStl+k +
    EHU01281.1 32 VCLVGRNGAGKSTLMKII 49
                  689************974 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00045
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgYt...gqevvvidD 57 
                    l Gp+g+GK+tl + + ++l        +++v s  + e  ++d+ +   +++ +v+d 
    EHU01281.1 349 ALIGPNGCGKTTLLRLMLQQLKA-----DHGRVHSgTKLEVAYFDQHRaelDPDKTVMDN 403
                   689*************7777763.....33666665556666666665444455555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.052        15       1      20 [.      31      50 ..      31     103 .. 0.85
   2 !   13.9   0.0   0.00017     0.049       1      20 [.     347     366 ..     347     405 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.052
      AAA_28  1 kivitGgestGKTtlleaLa 20
                +++++G  ++GK+tl++ ++
  EHU01281.1 31 RVCLVGRNGAGKSTLMKIIN 50
                79*************99776 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00017
      AAA_28   1 kivitGgestGKTtlleaLa 20 
                 ki+++G+ ++GKTtll+ + 
  EHU01281.1 347 KIALIGPNGCGKTTLLRLML 366
                 79**************7654 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0036       1.1       2      25 ..      30      53 ..      29      63 .. 0.91
   2 !   10.8   0.1     0.001      0.31       3      21 ..     347     365 ..     345     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0036
   PduV-EutP  2 kkilliGkvgsGKttLtqalkgee 25
                +++ l+G+ g+GK tL++ ++ge+
  EHU01281.1 30 ERVCLVGRNGAGKSTLMKIINGEQ 53
                6899****************9975 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.001
   PduV-EutP   3 killiGkvgsGKttLtqal 21 
                 ki liG+ g+GKttL + +
  EHU01281.1 347 KIALIGPNGCGKTTLLRLM 365
                 899************8754 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.033       9.6       2      18 ..      32      48 ..      31      51 .. 0.89
   2 ?   -0.4   0.0       3.7   1.1e+03      19      73 ..     135     182 ..     130     200 .. 0.73
   3 !   11.6   0.0   0.00069       0.2       3      24 ..     349     370 ..     347     388 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.033
                EEEE--SSSSHHHHHHH CS
       AAA_5  2 vlLvGppGtgKselaer 18
                v+LvG  G gKs+l++ 
  EHU01281.1 32 VCLVGRNGAGKSTLMKI 48
                8************9875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.7
                 GGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEES CS
       AAA_5  19 laaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDE 73 
                 l +++n+ ++ + l+ dt+ + l g++         ++ +l ra   ++++l+lDE
  EHU01281.1 135 LESRINDVLQQIGLSPDTELSSLSGGWL--------RKAALGRALVsNPRVLMLDE 182
                 6677888888888888888888888888........56666666556888888888 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00069
                 EEE--SSSSHHHHHHHGGGGBS CS
       AAA_5   3 lLvGppGtgKselaerlaaaln 24 
                  L+Gp G+gK++l + +++ l+
  EHU01281.1 349 ALIGPNGCGKTTLLRLMLQQLK 370
                 69**************998874 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0093       2.7      19      41 ..      32      54 ..      18      67 .. 0.80
   2 ?    2.6   0.0      0.25        72     142     191 ..      69     116 ..      63     120 .. 0.85
   3 !    7.5   0.0    0.0076       2.2      14      47 ..     343     376 ..     332     380 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0093
  Zeta_toxin 19 illgGqpGAGKselaellkdele 41
                + l+G  GAGKs+l++ ++ e  
  EHU01281.1 32 VCLVGRNGAGKSTLMKIINGEQP 54
                7899************9988865 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
  Zeta_toxin 142 dRyeeevaegRlvpkeehdeafeglresvealeeekqldrvkikdrdgkt 191
                 +R +++   +R++  ++ d + eg++e++e l+  +++++ +  d ++k+
  EHU01281.1  69 ARLQQD--PPRNITGSVYDFVAEGVQEQAEHLKAYHAISHQVMEDPSDKN 116
                 566666..45****************************999999888865 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0076
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvv 47 
                 +r + i l G  G+GK++l++l+ ++l+++ + v
  EHU01281.1 343 QRGDKIALIGPNGCGKTTLLRLMLQQLKADHGRV 376
                 56666778899**************998665555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0015      0.43      22      44 ..      31      53 ..      21     122 .. 0.82
   2 !    8.6   0.0    0.0031      0.92      21      45 ..     346     370 ..     331     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0015
                EEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnks 44
                 v lvG+ G GK+tl+k i+ + 
  EHU01281.1 31 RVCLVGRNGAGKSTLMKIINGEQ 53
                589**************998774 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0031
                 EEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksd 45 
                 + +al G  G+GKttl++ +l++++
  EHU01281.1 346 DKIALIGPNGCGKTTLLRLMLQQLK 370
                 4689************998887755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.034       9.9       1      22 [.      32      53 ..      32     144 .. 0.66
   2 !   12.2   0.0   0.00069       0.2       1      66 [.     348     406 ..     348     432 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.034
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                ++l G  G+GK+tl k ++ + 
  EHU01281.1 32 VCLVGRNGAGKSTLMKIINGEQ 53
                799*************996655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00069
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldalee 66 
                 I+l G+ G+GKttl +   + l     ++ v++   l+  ++++ ++ ++  d    + ++d+l e
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQL--KADHGRVHSGTKLEVAYFDQ-HRAELDPD----KTVMDNLAE 406
                 89**************997777..88888888888888888888.34444444....444444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.011       3.3      24      49 ..      20      45 ..       6      47 .. 0.83
   2 !    8.7   0.0    0.0041       1.2      31      50 ..     343     362 ..     336     379 .. 0.90
   3 ?   -0.5   0.0       2.6   7.5e+02     168     188 ..     475     495 ..     459     498 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
      AAA_25 24 wlvkgllpagelallaGapgtGKttl 49
                +  + ++ ++e + l+G+ g+GK+tl
  EHU01281.1 20 DNTELHIEENERVCLVGRNGAGKSTL 45
                55667999*****************9 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0041
      AAA_25  31 pagelallaGapgtGKttla 50 
                  +g+ ++l+G+ g+GKttl+
  EHU01281.1 343 QRGDKIALIGPNGCGKTTLL 362
                 68999*************97 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.6
      AAA_25 168 lvealeriarrtgaavllvhH 188
                  +e le++ + ++ +vllv H
  EHU01281.1 475 TLELLEELIDGYQGTVLLVSH 495
                 56778999999999****999 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.012       3.4       1      24 [.      31      54 ..      31     109 .. 0.68
   2 !   10.3   0.0    0.0021      0.63       1      27 [.     347     373 ..     347     400 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.012
                EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkf 24
                +v+lvG +g+GK++l+k +  ++ 
  EHU01281.1 31 RVCLVGRNGAGKSTLMKIINGEQP 54
                699************997766555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0021
                 EEEEESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek 27 
                 K+ l+G +g GKt+ll+ ++++   ++
  EHU01281.1 347 KIALIGPNGCGKTTLLRLMLQQLKADH 373
                 99*************987776554444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.16        47       5      35 ..      32      62 ..      28      99 .. 0.75
   2 !   13.3   0.0   0.00022     0.064       5      45 ..     348     393 ..     345     417 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.16
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesily 35
                ++++G   +GK+tl+k +  e+  ++ +i+y
  EHU01281.1 32 VCLVGRNGAGKSTLMKIINGEQPLDDGRIIY 62
                7899999*******97776555556666665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00022
      AAA_14   5 lvitGaRrvGKTtllkqlikell.....vkkesilyinldderdkk 45 
                 +++ G+  +GKTtll+ ++++l      v++   l+++  d++ ++
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKadhgrVHSGTKLEVAYFDQHRAE 393
                 6799**************9999877777555555555544433333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0042       1.2      43      80 ..      25      62 ..      18      75 .. 0.75
   2 !    7.9   0.0    0.0082       2.4      44      65 ..     342     363 ..     321     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0042
   IstB_IS21 43 fiekkenivllGpsGvGKshlaialgveavraglsvlf 80
                +ie++e ++l+G  G+GKs l   +  e   ++ ++++
  EHU01281.1 25 HIEENERVCLVGRNGAGKSTLMKIINGEQPLDDGRIIY 62
                799****************9987765554444445554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0082
   IstB_IS21  44 iekkenivllGpsGvGKshlai 65 
                 +++ + i+l+Gp G GK+ l  
  EHU01281.1 342 VQRGDKIALIGPNGCGKTTLLR 363
                 78999*************8854 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.046        13      24      43 ..      30      49 ..      23      61 .. 0.87
   2 ?    5.8   0.0     0.045        13      26      51 ..     348     372 ..     345     390 .. 0.84
   3 ?    5.5   0.3     0.056        16     107     183 ..     521     596 ..     507     625 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.046
       DUF87 24 rHlAilgsTGsGKSntvavL 43
                ++++ +g+ G+GKS++++++
  EHU01281.1 30 ERVCLVGRNGAGKSTLMKII 49
                578899************98 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.045
       DUF87  26 lAilgsTGsGKSntvavLleellekk 51 
                 +A +g  G GK+++ +++l++l + +
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKA-D 372
                 7899999***************95.3 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.056
       DUF87 107 eeddkpaaavqrsvleealdqaka..keekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsf..s 183
                 ++   ++a++qr+++++  +q++a  ke +  ++s+ep +++++      ++l+++ ++  ++l +kle+l  + g+   s
  EHU01281.1 521 GG--YHDAQQQRAAYKQQKTQVTAkaKEANRAAQSAEPKNESAKRSA---NKLSYNLTRELEQLPQKLEQLEARIGELqaS 596
                 55..5667778888888888877766788888888888886666665...9999999999999999999999888887433 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.041        12      14      47 ..      29      63 ..      22     320 .. 0.77
   2 !   11.9   0.0   0.00045      0.13       8      41 ..     339     372 ..     333     573 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.041
                 T-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  ATP-synt_ab 14 GqrtlipgafgvGktvisqslskqsnsdd.aiiyv 47
                  +r++++g +g Gk+++++ +  ++  dd  iiy 
   EHU01281.1 29 NERVCLVGRNGAGKSTLMKIINGEQPLDDgRIIYE 63
                 5799**************99999888887788885 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00045
                  HS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   8 lfpivqGqrtlipgafgvGktvisqslskqsnsd 41 
                     + +G +++++g +g+Gkt++++ +++q ++d
   EHU01281.1 339 SAQVQRGDKIALIGPNGCGKTTLLRLMLQQLKAD 372
                  566789******************9999987766 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0023      0.68      40      75 ..      18      51 ..      11      66 .. 0.83
   2 ?    6.8   0.0     0.011       3.3      51      83 ..     343     375 ..     322     413 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0023
      DUF815 40 lventeqfleglpannvLLwGarGtGKSslvkalln 75
                l++nte ++e +  + v L+G  G+GKS+l+k +  
  EHU01281.1 18 LLDNTELHIEEN--ERVCLVGRNGAGKSTLMKIING 51
                788998888765..689**************98865 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLr 83 
                 ++  ++ L+G  G+GK +l++ +l+++++++ r
  EHU01281.1 343 QRGDKIALIGPNGCGKTTLLRLMLQQLKADHGR 375
                 5567899*******************9987744 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.4   1.2e+02       2      17 ..      32      47 ..      31      52 .. 0.89
   2 !   13.4   0.0   0.00019     0.055       2      31 ..     348     377 ..     347     425 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.4
        MobB  2 lgivgksgsGKTtLle 17
                +++vg++g+GK tL++
  EHU01281.1 32 VCLVGRNGAGKSTLMK 47
                789***********97 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00019
        MobB   2 lgivgksgsGKTtLleklipelkarglrvg 31 
                 ++++g +g+GKTtLl  ++++lka   rv 
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKADHGRVH 377
                 6799*******************9876663 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.45   1.3e+02     127     163 ..      27      63 ..      15      84 .. 0.81
   2 !   13.4   0.0   9.8e-05     0.029     104     160 ..     321     376 ..     240     400 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.45
       T2SSE 127 rerglilvsGgTgsGKttllyallkeinksderivtv 163
                 +e+  + + G  g GK+tl+ ++  e + +d ri+  
  EHU01281.1  27 EENERVCLVGRNGAGKSTLMKIINGEQPLDDGRIIYE 63 
                 566667788999********99999999999999865 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.8e-05
       T2SSE 104 tlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderi 160
                 +l+++ ++ +  +++a+  ++ v++   i + G+ g GKttll  +l+++++++ r+
  EHU01281.1 321 ELENVDYAVDG-KQLANDFSAQVQRGDKIALIGPNGCGKTTLLRLMLQQLKADHGRV 376
                 44444333333.455555667779999999********************9997775 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.099        29      31      56 ..      27      52 ..      18      57 .. 0.85
   2 !   10.4   0.0    0.0013       0.4      32      69 ..     344     382 ..     333     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.099
      RuvB_N 31 ealdhvllyGpPGlGkttlakiiake 56
                e+ + v l+G  G Gk+tl kii  e
  EHU01281.1 27 EENERVCLVGRNGAGKSTLMKIINGE 52
                6678899***************9876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0013
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvkl.kitsgPvl 69 
                   d + l+Gp G Gkttl +++ ++l+++  ++ sg  l
  EHU01281.1 344 RGDKIALIGPNGCGKTTLLRLMLQQLKADHgRVHSGTKL 382
                 56999*****************99999864366676665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.13        39       1      19 [.      31      49 ..      31      53 .. 0.86
   2 ?   -0.6   0.3       3.7   1.1e+03      28      81 ..     269     325 ..     260     335 .. 0.69
   3 !   10.4   0.0    0.0016      0.46       1      29 [.     347     375 ..     347     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.13
                EEEEE--TTSSHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkv 19
                +v++ G+ G GK+Tl+k +
  EHU01281.1 31 RVCLVGRNGAGKSTLMKII 49
                58899**********9765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.7
                 GGEEEEEEEEE-------EEEEEET..T--EEEEEETT..---SSEETTEEE-HHHH CS
    NTPase_1  28 vkvgGfyteevreggrrigFkivdla.sgeegiLarve..akreprvgkyvvdvesf 81 
                 +  +G+ +++ r++gr  + k    + s++++ + + +    +  r gk+v+++e++
  EHU01281.1 269 WIRQGIKARRTRNEGRVRALKALRRErSERREVMGKANmqVGEASRSGKIVFELENV 325
                 445899999999999988877666651444555555557677778899999888776 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0016
                 EEEEE--TTSSHHHHHHHHHHHH...GGG CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvk 29 
                 k+++ Gp G GKtTl++ +l++lk +  +
  EHU01281.1 347 KIALIGPNGCGKTTLLRLMLQQLKADHGR 375
                 58899******************987554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.21        61       4      20 ..      33      49 ..      31      61 .. 0.82
   2 ?   -1.6   0.0       5.9   1.7e+03      39      61 ..     209     231 ..     205     232 .. 0.91
   3 !    8.9   0.0    0.0035         1       4      23 ..     349     368 ..     347     407 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.21
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                 l+G  G+GK+tL++ +
  EHU01281.1 33 CLVGRNGAGKSTLMKII 49
                689999*******9754 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.9
                 CHCCCCCCHCCCT.EEEETTTTE CS
        cobW  39 vsiDaellretgveivelenGci 61 
                 +s+D++++r+ ++ iv+l  G++
  EHU01281.1 209 ISHDRSFIRNMATRIVDLDRGKL 231
                 689*********9******9985 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0035
                 EEEESTTCCHHHHHHHHHCT CS
        cobW   4 vltGflGsGKTtLlnhllen 23 
                  l G+ G GKTtLl+ +l++
  EHU01281.1 349 ALIGPNGCGKTTLLRLMLQQ 368
                 5789***********99954 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.047        14      22      43 ..      28      49 ..      15     168 .. 0.88
   2 !    7.3   0.0     0.008       2.3      22      44 ..     344     366 ..     324     390 .. 0.74
   3 ?   -1.4   0.3       3.5     1e+03      57     108 ..     562     624 ..     532     633 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.047
                .EEEEEEEESTTSSHHHHHHHH CS
     G-alpha 22 revkllllGqseSGKsTilkql 43
                ++ ++ l+G ++ GKsT++k +
  EHU01281.1 28 ENERVCLVGRNGAGKSTLMKII 49
                345899************9865 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.008
                 .EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha  22 revkllllGqseSGKsTilkqlk 44 
                 r  k+ l+G +++GK+T+l+ + 
  EHU01281.1 344 RGDKIALIGPNGCGKTTLLRLML 366
                 4459**************98664 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.5
                 HCCHHHHHHHHHHHHHHHHHHHHHTT..................HHHC-SS-SCCCS-HCHHH CS
     G-alpha  57 atwraviqlnivrsiktilealesleselsesf...........elqelkerldplkkveasl 108
                 +   + +  n+ r ++++ ++le+le ++ e              +++ +  ld+l +vea+l
  EHU01281.1 562 KRSANKLSYNLTRELEQLPQKLEQLEARIGELQasmshpdffsqPHDKTQPVLDELAQVEAQL 624
                 334555666777777777777777544442222444556667767777788888888888876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00067       0.2       1      78 [.      32     108 ..      32     175 .. 0.78
   2 ?    0.8   0.0       1.5   4.5e+02       1      20 [.     348     367 ..     348     504 .. 0.87
   3 ?   -1.8   0.5       9.7   2.9e+03      66      77 ..     548     559 ..     522     600 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00067
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE..T-EB--CHHHHHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek..ekkledfsevreeieketek 78 
                 +++vG   +GKS+++  + ge+ l  g ++    +++ +l++++    r+ + ++ ++  e  +e++++++ +   + + 
  EHU01281.1  32 VCLVGRNGAGKSTLMKIINGEQPLDDGRIIYETDLVVARLQQDPP---RNITGSVYDFvaEGVQEQAEHLKAYHAISHQV 108
                 689****************************9999999**99999...45555555555533333444443333333333 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.5
                 EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlg 20 
                 ia++G    GK+++l  +l+
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQ 367
                 79999999999999977665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 9.7
                 HHHHHHHHHHHH CS
   Dynamin_N  66 sevreeiekete 77 
                 ++ ++  e ++e
  EHU01281.1 548 NRAAQSAEPKNE 559
                 111111111111 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.67     2e+02      46      68 ..      30      52 ..      15      90 .. 0.82
   2 ?   11.2   0.0   0.00087      0.26      46      79 ..     347     379 ..     321     406 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.67
       Rad17 46 riLLisGPsGCgkstvvkvLske 68
                + + + G  G gkst +k++  e
  EHU01281.1 30 ERVCLVGRNGAGKSTLMKIINGE 52
                3455779***********98765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00087
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklrewlnp 79 
                 +i  + GP GCgk+t ++ + ++l  +      +
  EHU01281.1 347 KIA-LIGPNGCGKTTLLRLMLQQLKADHGRVHSG 379
                 355.55***********99887776665555555 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.27        78      13      48 ..      27      61 ..      24      69 .. 0.75
   2 ?    8.3   0.1    0.0032      0.93      17      45 ..     347     375 ..     340     392 .. 0.91
   3 ?    0.9   0.1      0.59   1.7e+02     274     321 ..     518     567 ..     513     582 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.27
  TrwB_AAD_bind 13 retqhilivGttGsGKtqalekllrairargdraiv 48
                   +e++ + +vG  G+GK++ + k++++ +   d  i+
     EHU01281.1 27 EENERVCLVGRNGAGKSTLM-KIINGEQPLDDGRII 61
                   588999***********876.455555555555555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0032
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargdr 45 
                    +i+++G  G GKt+ l+ +l++++a   r
     EHU01281.1 347 KIALIGPNGCGKTTLLRLMLQQLKADHGR 375
                    689********************998766 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.59
  TrwB_AAD_bind 274 avvlglqsiaqlrevYGedaaqsilslvntklilrvs..daetAeelsel 321
                     +v g+++ +q r+ Y ++++q  ++  + +  ++ +   +e+A+++++ 
     EHU01281.1 518 TFVGGYHDAQQQRAAYKQQKTQVTAKAKEANRAAQSAepKNESAKRSANK 567
                    68999****************99988777666666332256677766665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       8.8   2.6e+03      10      29 ..      29      48 ..      25      52 .. 0.80
   2 ?   11.9   0.3   0.00071      0.21      10     126 ..     345     483 ..     338     501 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 8.8
      AAA_19 10 ekvllvtaGpGtGKTrvlkh 29
                ++ +++++  G GK++++k 
  EHU01281.1 29 NERVCLVGRNGAGKSTLMKI 48
                5668899999****998775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00071
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkp...........eeillvaftgrAakelrerlaalgaeatTiHrlal..............ldfddl 83 
                  + ++++++ G+GKT++l+ +++ l++ +g+             ++ + + + +  +++l+e  ++++++ +  H l+               +     
  EHU01281.1 345 GDKIALIGPNGCGKTTLLRLMLQQLKADHGRVHsgtklevayfdQHRAELDPDKTVMDNLAEGKQEVLVNGKPRHVLGYlqdflfhpkramtpV----- 438
                 56789*******************9988765433433333333333333333333333333333333333444444433333322222222220..... PP

      AAA_19  84 ltealelle.........eaeeekklqeeellivDE.fqdvdelqyrLlkall 126
                         +             + +l+  +l+i DE + d+d    +Ll++l 
  EHU01281.1 439 --------RalsggernrLLLARLFLRPSNLMILDEpTNDLDVETLELLEELI 483
                 ........022233222211123445444577777755677777777777776 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.35     1e+02       4      18 ..      32      46 ..      29      50 .. 0.85
   2 ?    8.6   0.1    0.0045       1.3       4      29 ..     348     373 ..     346     393 .. 0.80
   3 ?   -2.1   0.0       8.3   2.5e+03      52      82 ..     379     410 ..     367     412 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.35
                EEEEESTTSSHHHHH CS
       SRP54  4 illvGlqGaGKTttl 18
                + lvG +GaGK t +
  EHU01281.1 32 VCLVGRNGAGKSTLM 46
                689********9975 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0045
                 EEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkeg 29 
                 i+l+G++G GKTt l  + ++lk+++
  EHU01281.1 348 IALIGPNGCGKTTLLRLMLQQLKADH 373
                 899***********999988888774 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 8.3
                 HHHTTEEEEESSTTS.CHHHHHHHHHHHHHHT CS
       SRP54  52 aeklgvpvikkkeea.dpaavakeavekakee 82 
                 ++kl+v ++++++++ dp +++ + + + k+e
  EHU01281.1 379 GTKLEVAYFDQHRAElDPDKTVMDNLAEGKQE 410
                 78999999996666669999999999988875 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.96   2.8e+02       1      15 [.      35      49 ..      35      69 .. 0.86
   2 ?    8.4   0.0    0.0092       2.7       1      81 [.     351     418 ..     351     442 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.96
                EE-TTSSHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqcekl 15
                +G  G+GK+t+++ +
  EHU01281.1 35 VGRNGAGKSTLMKII 49
                6889*******9655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0092
                 EE-TTSSHHHHHHHHHHHHTEEE..EEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfth..lsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdghpr 81 
                 +G+ G+GK+t+++ + ++++  h  +  G  l  +           +++  +++ + + +k++++++ae  +k++vlv+g+pr
  EHU01281.1 351 IGPNGCGKTTLLRLMLQQLKADHgrVHSGTKLE-V----------AYFD--QHRAELDPDKTVMDNLAE--GKQEVLVNGKPR 418
                 5999********999999998884444455442.1..........2221..112222223334444443..445566666665 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.055        16      24      55 ..      28      59 ..      21     135 .. 0.89
   2 ?    6.9   0.0    0.0083       2.4      22      70 ..     342     395 ..     333     408 .. 0.73
   3 ?   -2.3   0.8       4.8   1.4e+03     342     370 ..     535     563 ..     523     583 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.055
        DLIC 24 sgksvlvlGedgsGkttliaklqGveeekkGr 55
                 +  v ++G +g+Gk+tl+  + G +    Gr
  EHU01281.1 28 ENERVCLVGRNGAGKSTLMKIINGEQPLDDGR 59
                578899*************9999977666665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0083
        DLIC  22 lPsgksvlvlGedgsGkttlia.klqGve..ee..kkGrGleylyldvkdedrd 70 
                 +  g ++ ++G +g+Gkttl+   lq +   +   + G  le +y+d +  + d
  EHU01281.1 342 VQRGDKIALIGPNGCGKTTLLRlMLQQLKadHGrvHSGTKLEVAYFDQHRAELD 395
                 56678899***********9862456554113312568889*****99987776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.8
        DLIC 342 akqpatatrgvesparsqsgsprttnrsa 370
                 ++++++++++ e++  +qs+ p++++   
  EHU01281.1 535 QQKTQVTAKAKEANRAAQSAEPKNESAKR 563
                 12233344444444444444443332222 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.044        13      18      48 ..      18      48 ..       9      60 .. 0.83
   2 ?    5.1   0.0     0.032       9.3      14      60 ..     330     376 ..     316     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.044
                HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHH CS
        MeaB 18 llerllakaGraqvvGltGvPGaGkstlvea 48
                ll++   +  + ++v l G  GaGkstl++ 
  EHU01281.1 18 LLDNTELHIEENERVCLVGRNGAGKSTLMKI 48
                66666666777899*************9875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.032
                 HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB  14 eakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrv 60 
                 + k+l +  +a+  r  ++ l G  G Gk tl+  + ++l++   rv
  EHU01281.1 330 DGKQLANDFSAQVQRGDKIALIGPNGCGKTTLLRLMLQQLKADHGRV 376
                 678999999999*********************99999998766665 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.045        13      21      40 ..      27      46 ..      18      49 .. 0.85
   2 ?    4.3   0.0     0.065        19      20      40 ..     342     362 ..     331     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.045
                S---EEEEE-SSSSSTTTTH CS
        DAP3 21 kkvkrlvltGekgsGKSvlL 40
                ++++r+ l G++g GKS+l+
  EHU01281.1 27 EENERVCLVGRNGAGKSTLM 46
                6899**************98 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.065
                 SS---EEEEE-SSSSSTTTTH CS
        DAP3  20 kkkvkrlvltGekgsGKSvlL 40 
                  +   ++ l G +g+GK++lL
  EHU01281.1 342 VQRGDKIALIGPNGCGKTTLL 362
                 55667999***********98 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   0.00034       0.1     167     245 ..     524     606 ..     501     637 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
  Fmp27_WPPW 167 dpervqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse....e 245
                 + ++ q+   ++ +++++++ ++ +++ +++e k+e+ +++ ++ + +l++e+++l +kle le+ + +l++s+++ +     
  EHU01281.1 524 HDAQQQRAAYKQQKTQVTAKAKEANRAAQSAEPKNESAKRSANKLSYNLTRELEQLPQKLEQLEARIGELQASMSHPDffsqP 606
                 5668899999***************************999999999**************************99876666531 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.061        18      12      37 ..      27      52 ..      18      58 .. 0.82
   2 ?    4.7   0.0     0.063        18      10      35 ..     341     366 ..     333     383 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.061
                TTEEEEEEEESTTSSHHHHHHHHHHS CS
         Arf 12 kkelrilllGLDnaGKtTilkklkle 37
                + + r+ l+G  +aGK+T++k ++ e
  EHU01281.1 27 EENERVCLVGRNGAGKSTLMKIINGE 52
                667899*************9877655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.063
                 T.TTEEEEEEEESTTSSHHHHHHHHH CS
         Arf  10 lkkkelrilllGLDnaGKtTilkklk 35 
                 ++++  +i l+G  + GKtT+l  + 
  EHU01281.1 341 QVQRGDKIALIGPNGCGKTTLLRLML 366
                 4567889*************996433 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.36   1.1e+02      24      44 ..      31      51 ..      21      74 .. 0.85
   2 ?    6.3   0.0      0.02       5.7      23      44 ..     346     367 ..     329     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.36
  Mg_chelatase 24 nlllvGppGsGKtmlakrlps 44
                   + lvG  G+GK+ l k +++
    EHU01281.1 31 RVCLVGRNGAGKSTLMKIING 51
                  6889***********998875 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.02
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlps 44 
                    ++ l+Gp G+GKt l + + +
    EHU01281.1 346 DKIALIGPNGCGKTTLLRLMLQ 367
                   5789**********99876654 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0087       2.6       2      34 ..      32      64 ..      31     111 .. 0.81
   2 ?    1.8   0.0      0.43   1.3e+02       1      26 [.     347     372 ..     347     388 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0087
   Gtr1_RagA  2 vLLmGksgsGKtsmrsiiFdnylardtlrlgat 34
                v L+G++g+GK+++ +ii  +    d + +  t
  EHU01281.1 32 VCLVGRNGAGKSTLMKIINGEQPLDDGRIIYET 64
                78****************877766666666655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.43
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylar 26 
                 k+ L+G++g GKt++ + + +++ a 
  EHU01281.1 347 KIALIGPNGCGKTTLLRLMLQQLKAD 372
                 788***********999988887765 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0043       1.3      12      43 ..     340     380 ..     330     419 .. 0.65
   2 ?    6.7   0.6     0.018       5.4     122     188 ..     534     597 ..     490     619 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0043
      AAA_11  12 salseseitliqGPPGtgKTktivellsqll.........s 43 
                   +++ +   + GP G+gKT+ +  +l+ql          +
  EHU01281.1 340 AQVQRGDKIALIGPNGCGKTTLLRLMLQQLKadhgrvhsgT 380
                 455666667888******************64444443330 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.018
      AAA_11 122 kaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesl 188
                 k+q+++ ++k++e+++    a+++e ++e+ k+s++k + +l++e+++l ++ ++l+ ++ e ++s+
  EHU01281.1 534 KQQKTQVTAKAKEANR---AAQSAEPKNESAKRSANKLSYNLTRELEQLPQKLEQLEARIGELQASM 597
                 1111111111111111...112222222566777777777777777777777777777777776666 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.12        37       2      23 ..      31      52 ..      30      54 .. 0.88
   2 ?    4.7   0.0     0.067        20       2      19 ..     347     364 ..     346     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.12
                EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltga 23
                +v+lvG   +Gk+tl+  + g 
  EHU01281.1 31 RVCLVGRNGAGKSTLMKIINGE 52
                689*************998875 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.067
                 EEEEEESTTSSHHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfna 19 
                 ++al+G   +Gkttl+  
  EHU01281.1 347 KIALIGPNGCGKTTLLRL 364
                 69*************965 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.6    0.0006      0.18      24      84 ..     528     592 ..     522     599 .. 0.67
   2 ?   -1.6   0.0       8.5   2.5e+03      10      36 ..     608     634 ..     602     638 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0006
                 XXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  24 qnlentkeklseinrsveetnekvk....dankairdArrsvkkLeklapqLldklkelkqleea 84 
                 q+    k++  ++ ++++e n  ++    +   a r+A++ + +L+++++qL +kl++l+ +  +
  EHU01281.1 528 QQRAAYKQQKTQVTAKAKEANRAAQsaepKNESAKRSANKLSYNLTRELEQLPQKLEQLEARIGE 592
                 55555677777778888888888872222333455666666778999999999999999987555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 8.5
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II  10 etakevleqlaplsqnlentkeklsei 36 
                 ++++ vl+ la+++++le   +  +e+
  EHU01281.1 608 DKTQPVLDELAQVEAQLETAFARWEEL 634
                 678889999999999988776666555 PP

>> WDCP  WD repeat and coiled-coil-containing protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.0    0.0021      0.62     524     602 ..     534     609 ..     520     622 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0021
        WDCP 524 aletldaepvnrsaalasasstsdessrpespkvekkknlekekeaeqlskelerlsekltevqqsLseltdllqngkk 602
                 + ++++     ++a  a +s++++++s   s +     + +  +e+eql ++le+l +++ e+q s+s+   ++q + k
  EHU01281.1 534 KQQKTQVTAKAKEANRAAQSAEPKNESAKRSANKL---SYNLTRELEQLPQKLEQLEARIGELQASMSHPDFFSQPHDK 609
                 22333333333333333333333333333333333...23334666666666666666666666666665555555555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   8.6      0.82   2.4e+02       7      85 ..     523     597 ..     520     599 .. 0.74
   2 ?    1.5   0.0      0.94   2.8e+02       7      42 ..     603     638 ..     602     640 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.82
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   7 fqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekql 85 
                  + + qqq  +++qq++q+ ++ ke++ + +  e   e++k  ++  +  ++ +++  +e+L +++e+le++i +l+ ++
   EHU01281.1 523 YHDAQQQRAAYKQQKTQVTAKAKEANRAAQSAEPKNESAK--RSANK--LSYNLTRELEQLPQKLEQLEARIGELQASM 597
                  7789999999**********99999999998888888733..33333..466667777777777777777777777665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.94
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS- CS
  Prefoldin_2   7 fqqlqqqlqqlaqqikqletqlkelelvleelelld 42 
                  f+q +++ q +  +++q+e+ql+ +    eele+++
   EHU01281.1 603 FSQPHDKTQPVLDELAQVEAQLETAFARWEELESMK 638
                  667778888888889999999988888888888765 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0079       2.3      15      37 ..      27      49 ..      22      55 .. 0.86
   2 ?   -4.1   0.0       6.5   1.9e+03    1053    1086 ..      97     131 ..      92     141 .. 0.76
   3 ?    6.0   0.1    0.0061       1.8      18      37 ..     346     365 ..     340     365 .. 0.84
   4 ?    6.3   6.3     0.005       1.5     265     369 ..     527     633 ..     514     639 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0079
     DUF3584 15 dldghtnieGtNaaGKTtLlrLi 37
                + ++++ ++G N+aGK tL+++i
  EHU01281.1 27 EENERVCLVGRNGAGKSTLMKII 49
                457899999***********987 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6.5
     DUF3584 1053 afelwkks.dgerelPseelvqalrrvldilpsea 1086
                    ++++   +++ e Ps++ ++ ++r+  il+   
  EHU01281.1   97 HLKAYHAIsHQVMEDPSDKNLNEMARLQGILDHHN 131 
                  55666643588889999999999999999998755 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0061
     DUF3584  18 ghtnieGtNaaGKTtLlrLi 37 
                 ++  + G N+ GKTtLlrL+
  EHU01281.1 346 DKIALIGPNGCGKTTLLRLM 365
                 566789************95 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.005
     DUF3584 265 sllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeq..kkkyedadieklkadldqlpsirsele 361
                 +   +++k+++++++ k +e + a+++ + + ++ +   ++ + +l+ el+++ +kl++ e+++ +l+++  + ++  +  +k +  ld+l +++++le
  EHU01281.1 527 QQQRAAYKQQKTQVTAKAKEANRAAQSAEPKNESAKRSANKLSYNLTRELEQLPQKLEQLEARIGELQASmsHPDFFSQPHDKTQPVLDELAQVEAQLE 625
                 444445555555555555555555555555555555555555555555555555555555555555554311344555555555555555555555555 PP

     DUF3584 362 eleeelda 369
                  + ++ + 
  EHU01281.1 626 TAFARWEE 633
                 55555444 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.7     0.075        22      11      43 ..     518     550 ..     516     561 .. 0.82
   2 ?    5.0   0.4      0.07        21      21      45 ..     571     595 ..     565     599 .. 0.79
   3 ?   -1.5   0.1       7.3   2.1e+03      24      44 ..     615     635 ..     607     637 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.075
                 XXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  11 fgkkgllaykqlkqeiaalqaelaklkaeneeL 43 
                 ++++g+++ +q+++ +++++ ++ ++ +e ++ 
  EHU01281.1 518 TFVGGYHDAQQQRAAYKQQKTQVTAKAKEANRA 550
                 678999999999999999999998877776655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.07
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  21 qlkqeiaalqaelaklkaeneeLea 45 
                  l +e+++l ++l++l a++ eL+a
  EHU01281.1 571 NLTRELEQLPQKLEQLEARIGELQA 595
                 5677888888888888888888876 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 7.3
                 HHHHHHHHHHHHHHHHHHHHH CS
       DivIC  24 qeiaalqaelaklkaeneeLe 44 
                  e+a+ +a+l++  a+ eeLe
  EHU01281.1 615 DELAQVEAQLETAFARWEELE 635
                 688888999888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1883  (0.105025); expected 358.6 (0.02)
Passed bias filter:                     1054  (0.0587874); expected 358.6 (0.02)
Passed Vit filter:                       203  (0.0113224); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.45
# Mc/sec: 4274.01
//
Query:       EHU01282.1  [L=422]
Description: paraquat-inducible membrane protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-90  301.3  35.7      1e-53  181.3  14.1    2.1  2  PqiA            Paraquat-inducible protein A
     0.0004   20.4  16.0     0.0096   16.0   9.0    3.3  3  UPF0547         Uncharacterised protein family UPF0547
     0.0034   17.4  10.7      0.095   12.7   0.8    2.4  2  DZR             Double zinc ribbon
  ------ inclusion threshold ------
       0.38    9.8   0.0       0.38    9.8   0.0    2.9  3  Tmemb_55A       Transmembrane protein 55A
       0.98    8.9   5.5        1.6    8.3   1.4    2.6  2  Mu-like_Com     Mu-like prophage protein Com
        1.1    9.3   4.6        1.7    8.7   0.1    2.3  2  Zn_Tnp_IS91     Transposase zinc-binding domain
        4.9    6.8   6.1         24    4.6   1.2    2.3  2  TackOD1         Thaumarchaeal output domain 1


Domain annotation for each model (and alignments):
>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3  13.6   3.5e-40     9e-37       3     155 ..      50     200 ..      48     201 .. 0.96
   2 !  181.3  14.1     4e-57     1e-53       1     154 [.     253     408 ..     253     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 3.5e-40
        PqiA   3 rtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgsrrllrlleflgrWs 101
                 r++ +alaal++l++Anl+p+++++++g +s+++l+++   ++ +++  +A+l++l++ ++P++++++l+ll+ ++k+  +   +  l+r+l ++++W+
  EHU01282.1  50 RPTGYALAALFMLVLANLFPFITMKVAGLSSQISLMQIPGVMVADDYASLATLFLLFVQAIPAFCMVTLVLLVNQVKM--PLSLKLGLARILFHMRSWG 146
                 77889***********************************************************************55..567789************* PP

        PqiA 102 MldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdrl 155
                 M+++f+ g+lv++vkl+++ +i+++++++ ++l++ll++ a++++d+r+lW ++
  EHU01282.1 147 MAEIFMAGVLVSFVKLMAYGEISLETSFWPWCLFCLLQLRAFQCLDRRWLWLQI 200
                 ***************************************************886 PP

  == domain 2  score: 181.3 bits;  conditional E-value: 4e-57
        PqiA   1 lqrtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgs...rrllrllef 96 
                 lq+t+al++++++l++pAnllpim +++lgs  +++++ gv+ lw +gs++vAl++f+asi+vP lk+l++ +l++ ++ +  +r s   +r+++++ef
  EHU01282.1 253 LQWTMALLITSVMLYVPANLLPIMITETLGSAMPSNIMAGVILLWGDGSYPVALVIFIASIMVPSLKMLAIGWLCWDASGR-GQRDShkmHRIYEVVEF 350
                 699***************************************************************************544.44444567********* PP

        PqiA  97 lgrWsMldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdr 154
                 +grWsM+dVfv+++l alv++g+l++i+p  g+++fal+v+ltm+aa++fdprl Wdr
  EHU01282.1 351 VGRWSMIDVFVIAVLSALVRMGQLMKIYPAWGAVLFALVVILTMIAAMTFDPRLTWDR 408
                 *********************************************************8 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.029        75       3       8 ..      13      18 ..      12      22 .. 0.79
   2 ?    3.8   0.0     0.024        63       3      13 ..      33      43 ..      32      46 .. 0.82
   3 !   16.0   9.0   3.7e-06    0.0096       2      21 ..     223     242 ..     222     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.029
     UPF0547  3 CPeCea 8 
                CP+C+ 
  EHU01282.1 13 CPQCDL 18
                ****95 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.024
     UPF0547  3 CPeCeakvPva 13
                CP+C + + v+
  EHU01282.1 33 CPRCHTSLTVN 43
                ****9988776 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 3.7e-06
     UPF0547   2 vCPeCeakvPvaaqfCphCG 21 
                  CP C a++Pva q+Cp CG
  EHU01282.1 223 SCPCCTAILPVAQQECPRCG 242
                 7******************9 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.8   3.7e-05     0.095       4      42 ..       2      44 ..       1      46 [. 0.86
   2 !    9.0   3.3   0.00056       1.4      28      49 .]     221     242 ..     178     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.7e-05
         DZR  4 CgeelppdarfCseCgtklkavaa.....edrCpsCgekvdpea 42
                C ++ ++    C++C   +k  ++        Cp+C+++++ ++
  EHU01282.1  2 CSADKTSAWMLCPQCDLMVK-LPDipvgsRASCPRCHTSLTVNW 44
                8899999999********97.44458899**********99887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00056
         DZR  28 edrCpsCgekvdpearfCpeCG 49 
                  + Cp C++ ++  ++ Cp CG
  EHU01282.1 221 LRSCPCCTAILPVAQQECPRCG 242
                 5678888888888888888887 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00015      0.38     149     215 ..      11      78 ..       3     106 .. 0.84
   2 ?    1.2   0.5     0.062   1.6e+02     168     237 ..     236     312 ..     226     321 .. 0.65
   3 ?   -0.8   0.5      0.25   6.5e+02     206     235 ..     364     393 ..     311     401 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
   Tmemb_55A 149 viCghCkntflftels.rtlarCPhCrkvssvGrryarkrsllllllglillviaigltlgtlkqakk 215
                 + C  C       ++   ++a CP+C+    v  + +rkr + ++l +l +lv a    + t+k a  
  EHU01282.1  11 MLCPQCDLMVKLPDIPvGSRASCPRCHTSLTVNWSEPRKRPTGYALAALFMLVLANLFPFITMKVAGL 78 
                 66777777777777766899**********************************99999999887754 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.062
   Tmemb_55A 168 arCPhCrkvssvGrryarkrsllllllglillviaigl......tlgtlkqakkykgiyvsyv.llillalvllara 237
                   CP+C  v+   r+++ + +++ll+ +++l v a  l      tlg     + + g++ ++    + +alv+++ +
  EHU01282.1 236 QECPRCGVVAHARRKHSLQWTMALLITSVMLYVPANLLpimiteTLGSAMPSNIMAGVILLWGdGSYPVALVIFIAS 312
                 57********9999999999999999999988877554111111334444445555556666423455555555555 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.25
   Tmemb_55A 206 tlgtlkqakkykgiyvsyvllillalvlla 235
                 +l++l  + +   iy ++ +++++ +v+l+
  EHU01282.1 364 VLSALVRMGQLMKIYPAWGAVLFALVVILT 393
                 234444555667788888777665555543 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2     0.084   2.2e+02      27      32 ..      33      38 ..      30      44 .. 0.84
   2 ?    8.3   1.4   0.00061       1.6      25      37 ..     236     248 ..     223     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.084
  Mu-like_Com 27 CPRCGt 32
                 CPRC t
   EHU01282.1 33 CPRCHT 38
                 ****87 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00061
  Mu-like_Com  25 iKCPRCGtLnHlk 37 
                    CPRCG + H +
   EHU01282.1 236 QECPRCGVVAHAR 248
                  57*********87 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00067       1.7      40      76 ..      11      49 ..       2      64 .. 0.79
   2 ?    1.2   1.3      0.15   3.7e+02      30      47 ..     226     243 ..     219     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00067
  Zn_Tnp_IS91 40 yeCeeCghe.kivyfsCksrh.CpsCqkkateewlekqq 76
                 + C++C+   k+     +sr+ Cp+C++  t +w e ++
   EHU01282.1 11 MLCPQCDLMvKLPDIPVGSRAsCPRCHTSLTVNWSEPRK 49
                 5699998552555677889989************99776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
  Zn_Tnp_IS91  30 CrtaalGfaryeCeeCgh 47 
                  C ta l +a+ eC+ Cg 
   EHU01282.1 226 CCTAILPVAQQECPRCGV 243
                  777778888888888873 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3      0.01        27     104     134 ..      11      41 ..       2      50 .. 0.69
   2 ?    4.6   1.2    0.0092        24      73      98 ..     221     246 ..     216     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.01
     TackOD1 104 ihhftCgnvgpeeeflkegkleCpkCktkLr 134
                 + + +C  + +  +  ++++ +Cp+C+t+L+
  EHU01282.1  11 MLCPQCDLMVKLPDIPVGSRASCPRCHTSLT 41 
                 4566666667777777777778888887775 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0092
     TackOD1  73 irlCpsCksghlnvrevCpkCkSidi 98 
                 +r Cp C       +++Cp C+ +  
  EHU01282.1 221 LRSCPCCTAILPVAQQECPRCGVVAH 246
                 689******************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2998.55
//
Query:       EHU01283.1  [L=547]
Description: paraquat-inducible protein B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-36  122.7   0.3    1.6e-13   50.8   0.0    3.5  3  MlaD      MlaD protein
     0.0026   18.0   1.5      0.026   14.8   0.7    2.3  2  DUF948    Bacterial protein of unknown function (DUF948)
  ------ inclusion threshold ------
       0.22    9.6   0.5       0.42    8.7   0.5    1.4  1  EzrA      Septation ring formation regulator, EzrA


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     1e-11   6.1e-08       2      81 .]      43     134 ..      42     134 .. 0.97
   2 !   35.4   0.0   1.7e-12   9.9e-09       2      62 ..     158     218 ..     157     248 .. 0.88
   3 !   50.8   0.0   2.6e-17   1.6e-13       3      81 .]     287     390 ..     285     390 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1e-11
        MlaD   2 gytvtaqfdnangLkvg.apVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped..........sraqvstggll.gekyialdpg 81 
                 g +vt+ + +a+g+++g + ++ r v+vG V+s  l +d ++v+++++l++ +e+++ +d           r ++++ g+l ++ yi+l+pg
  EHU01283.1  43 GPEVTLITESAEGIEAGkTTIKSRSVNVGVVESAVLTDDLHHVEIKARLNAGMEKLLHSDsvfwvvkpqvGREGITGLGTLlSGAYIELQPG 134
                 67899999************************************************************************99********98 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 1.7e-12
        MlaD   2 gytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsr 62 
                 g+++t+  + a+ L++g+pV +rG +vG+V++ t+d d+r++t+++ + + +++++++++r
  EHU01283.1 158 GIRITLDSNKAGQLNPGDPVLFRGFRVGTVETSTFDTDQRLMTYQLFIAAPYDRLVTTNVR 218
                 78999**999***************************************999999999954 PP

  == domain 3  score: 50.8 bits;  conditional E-value: 2.6e-17
        MlaD   3 ytvtaqfdnang.LkvgapVryrGvtvGrVtsitl......dp..dtrrvtvtvdld.........kksetsiped..............sraqvstgg 69 
                 +++ + f+++ + L+vgapV++rG++ G+V+++ +      +   +++rv+v ++++         +        +              +ra+++tg+
  EHU01283.1 287 IDYLMFFSDSIRgLQVGAPVEFRGIRLGTVAEVPFmnagtaQAlnNDYRVPVLIRIEpdrfinrlgQ--------NfdleqhlqdgkkrgLRATLKTGN 377
                 6788999999888********************9966555411457777799999996555555550........255555555556666********* PP

        MlaD  70 ll.gekyialdpg 81 
                 ll g+ y+++d++
  EHU01283.1 378 LLsGALYVDIDFY 390
                 **********985 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   1.0   0.00018       1.1      42      76 ..     434     468 ..     410     473 .. 0.81
   2 !   14.8   0.7   4.3e-06     0.026      20      87 ..     444     516 ..     437     525 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
      DUF948  42 vdpilkevedllakvnelledvneklekvdpltea 76 
                 ++++++e++++l++++++l d+++ +++++ +t++
  EHU01283.1 434 LNNMVTEATGTLKESQKTLRDLQRTIDNINVVTSS 468
                 78999*************************99975 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.3e-06
      DUF948  20 vllklkktldeaaatieele.....kqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                 +l++ +ktl+ +++ti++++       ++ + +e++++l++ n+ +++++  + +  +l+  ++ l + ++el
  EHU01283.1 444 TLKESQKTLRDLQRTIDNINvvtssPAMKTLPEETQQTLRELNRSMKGLQPGSPAYSKLVGDMQRLDQVLREL 516
                 799999*************999999999*********************998888888888888888877776 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.5     7e-05      0.42     387     494 ..     414     533 ..     406     535 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 7e-05
                 HHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHSSS-SS-S-TTTHHHHSTTTSTTTHHHHHHH..........T-TT--HHHHHHH CS
        EzrA 387 kleeieekqeeileslkslrkdE..krAreqldeikkelkeikrkieksnLPgiPesyleelkeasdeieelakeL..........ekkpinikevnkr 473
                  l++i++k+   l++++sl  ++  ++A  +l+e +k+l++++r+i++ n    +  + +  +e+++ ++el++++          +k   +++++ + 
  EHU01283.1 414 GLSQIQQKLMAALDKINSLPLNNmvTEATGTLKESQKTLRDLQRTIDNINVVTSSPAMKTLPEETQQTLRELNRSMkglqpgspaySKLVGDMQRLDQV 512
                 6899999**********98766622689999***************99998766666666666666666666665511111111113444467777777 PP

                 HHTTTTTSGGGTHHHHHHHHH CS
        EzrA 474 ldeardlveklyektnelikt 494
                 l+e + ++++l+ k+n l+ +
  EHU01283.1 513 LRELQPVLKTLNAKSNALVFE 533
                 777777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3861.87
//
Query:       EHU01284.1  [L=194]
Description: uncharacterized DUF330 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-37  129.2   4.8    1.2e-37  128.9   4.8    1.0  1  ABC_trans_aux  ABC-type transport auxiliary lipoprotein compo


Domain annotation for each model (and alignments):
>> ABC_trans_aux  ABC-type transport auxiliary lipoprotein component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   4.8   6.9e-42   1.2e-37       1     161 []      25     181 ..      25     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 6.9e-42
                    .....--------TTS--..SEEEE---BE-TTTSSSEEEEESSTTEEEEEEEEEESS-HHHHHHHHHHHHHHTTSSBSEEE---..-----SEEE CS
  ABC_trans_aux   1 YtLsapapaatpaasspa..lqvevgpVslpeyLdrpqivvrtgdgelqlaenarWaepLadeltraLaaaLsqrlpsarvaaepwpaaeapdyrv 94 
                    Y+L++ a++ ++  s+++  + ++v+++++p+yL+ +++v++t+d ++ +a n++Wa+pL+++l+++L  +L+++lp++ v++      +++  ++
     EHU01284.1  25 YQLPSGAASMQVISSEANaqPTLWVQQITVPDYLAGNGLVYQTSDVKYVIAANNLWASPLDQQLQQTLITNLTKALPGRLVIQTL---IGQEHDTL 117
                    889633333333333333569*********************************************************9999998...889999** PP

                    EEEEEEEEEE-TTSEEEEEEEEEEETTTTEEEEEEEEEEEEE-SSSSHHHHHHHHHHHHHHHHHHH. CS
  ABC_trans_aux  95 evdvqrFesdpggqavlearwtlldakgkrvlasrsfriseplagdgyaalVaalsqalaqlaeqia 161
                    +v+v++F+++++g+av++++wtl + +g    +++ f +  p  +dgy++lV++l+q+++q+a+qia
     EHU01284.1 118 SVTVNDFQGRYDGKAVISGQWTLEH-QG--RFTKQAFNLVLPQREDGYDSLVKTLAQGWQQIAQQIA 181
                    *************************.44..59**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1487.71
//
Query:       EHU01285.1  [L=55]
Description: ribosome modulation factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-30  104.8   5.6    2.1e-30  104.7   5.6    1.0  1  RMF       Ribosome modulation factor


Domain annotation for each model (and alignments):
>> RMF  Ribosome modulation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   5.6   1.1e-34   2.1e-30       1      52 [.       1      52 [.       1      54 [. 0.98

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 1.1e-34
         RMF  1 MkrqKrdrlerAfsrGYqaGleGrskelcPyqtldarseWLgGWRearedrw 52
                MkrqKrdrlerA+srGYqaG++Grske+cPyq +da+s+WLgGWR+a+edr+
  EHU01285.1  1 MKRQKRDRLERAHSRGYQAGITGRSKEMCPYQMIDAKSHWLGGWRQAMEDRS 52
                **************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 446.48
//
Query:       EHU01286.1  [L=172]
Description: beta-hydroxydecanoyl thioester dehydrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-54  181.5   0.0    6.7e-54  181.3   0.0    1.1  1  FabA      FabA-like domain


Domain annotation for each model (and alignments):
>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.0   3.8e-58   6.7e-54       1     137 [.      29     158 ..      29     159 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 3.8e-58
                 ---TTT---SEEEEEESTCTCTSS.EEEEEEE--TTSHHHHHSSTTS----HHHHHHHHHHHHHHHHHHCC---SCCEEE-EEEEEEECEEEE-S---T CS
        FabA   1 lparklllldrvleieeeggkfgkGlivaekdvtpnewfFqgHFpgdPvmPGvLgleamaQlvgfyllksggdegkgrarklvlfagvdevkfrgqvtP 99 
                 lp+ ++l++drv++++e+ggk++kG+++ae d++p+ wfF +HF gdPvmPG+Lgl+am+Qlvgfyl++ gg egkgra+      gv+evkf+gqv+P
  EHU01286.1  29 LPSGNMLMMDRVVKMTEDGGKYDKGFVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGG-EGKGRAL------GVGEVKFTGQVLP 120
                 799*******************************************************************99.9999999......************* PP

                 T-.EEEEEEEEEEEEECCTCEEEEEEEEEETTEEEEEE CS
        FabA 100 gdkklvleveikkvseekrviiiadaellvdgklvyea 137
                  +kk+++++++k+v+++k+v+++ad+e++vdg+l+y+a
  EHU01286.1 121 DAKKVTYRIHFKRVINRKLVMGVADGEVFVDGNLIYTA 158
                 ************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1643.38
//
Query:       EHU01287.1  [L=583]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-18   64.3   0.0    1.5e-17   63.6   0.0    1.2  1  AAA_32    AAA domain
    7.7e-09   35.4   0.0    1.9e-08   34.1   0.0    1.6  1  Lon_C     Lon protease (S16) C-terminal proteolytic domain


Domain annotation for each model (and alignments):
>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   1.7e-21   1.5e-17     309     493 ..     121     303 ..     120     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.7e-21
      AAA_32 309 ieyesemg..alvtdftlIkaGaLhkAnGGyLildaedlLeeplaWeaLkraLrskeikiesleeqlglistvsLkPepipldvKViLiGsrelYylLs 405
                 ie+e+ +g   ++ d  ++++G +h+AnGG L+l ++ lL++pl+W  Lkr+++++ ++  s +e     +    +  p+pl++  +L G+r++    +
  EHU01287.1 121 IEQEQLFGcvRVHKDRIQLEPGLIHRANGGTLVLSLRALLAQPLLWLRLKRSIEQGYLEWLSQDE----RRPLPVSVPPLPLKLNLVLCGERDTLADFQ 215
                 67777777445667788899***************************************998666....3445566789999999************** PP

      AAA_32 406 eyDpdfkklFkvkadFddemer.teenekkyarfiasivkkekllpfdrsavarlieyssrlaedqeklstrfseiadllrEAdywakk 493
                 e+D + +++  + ++F+++++  +e+ + + +++  +++ + ++   d++   +li++++r ++dqe   +  + +   lrE++ + ++
  EHU01287.1 216 ELDAEAHEM-AIYTEFEENLQIvDEDDVLAWCCWTVDLAAQADIAAPDEDFWPELIKEGVRYSGDQETYPLCPRWLLRQLRETALMGET 303
                 ********9.8*********972556789999***********************************9888888888888888776655 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   2.1e-12   1.9e-08     108     177 ..     431     507 ..     424     536 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.1e-12
                 GGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHH.....HHHHH..TT-SBEEEEGGGGGGTT CS
       Lon_C 108 dGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekl.....laakr..agikkvilPkenekdle 177
                 dG sa ++ + al+s+l++++ ++++a+tG +   G+v p+GGl ek+     ++ +r  +g + vi+P  n ++l+
  EHU01287.1 431 DGDSASLAELCALISALADTPLNQQIAVTGSVDQFGNVQPVGGLNEKIegffdICHQRelTGQQGVIIPACNVRHLS 507
                 9**********************************************844443344442246678999999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.34
# Mc/sec: 5156.86
//
Query:       EHU01288.1  [L=155]
Description: terminus region macrodomain organizer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-43  145.5   2.8    5.2e-43  145.5   2.8    1.7  2  MatP         MatP N-terminal domain
    4.9e-32  109.9   1.6    8.2e-32  109.2   1.6    1.4  1  MatP_C       MatP C-terminal ribbon-helix-helix domain
    0.00012   21.9   0.1    0.00021   21.1   0.1    1.4  1  RHH_4        Ribbon-helix-helix domain
  ------ inclusion threshold ------
      0.026   14.7   0.7      0.026   14.7   0.7    1.8  2  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
       0.18   12.2   4.1        0.8   10.1   0.3    2.1  2  PRP1_N       PRP1 splicing factor, N-terminal


Domain annotation for each model (and alignments):
>> MatP  MatP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   2.8   1.5e-46   5.2e-43       1      84 []       2      85 ..       2      85 .. 1.00
   2 ?   -1.0   0.0      0.74   2.7e+03      25      46 ..     117     139 ..      99     147 .. 0.59

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 1.5e-46
                -S---HHHHHHHHHHHHHHHHHTT---BS-SSHHHHHHHHHHHHTTTT-HHHHHHHHHHHB-HHHHHHHHHHHHHHHHHHHHTT CS
        MatP  1 kYqqLenleagWkwkYLvkkhregeeitryieksaaeeavqqllklenepekveeWikehmspelenklkqairarrkrffnae 84
                kYqqLenle+gWkwkYLvkkhrege itr++e saa++av++ll +en+p++v++Wi++h++pel+n+lkq+irarrkr+fnae
  EHU01288.1  2 KYQQLENLECGWKWKYLVKKHREGELITRHLELSAAQAAVDKLLMMENNPVDVNDWINQHIHPELDNRLKQTIRARRKRHFNAE 85
                8**********************************************************************************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.74
                 ---BS-SSHHHHHHH.HHHHHTT CS
        MatP  25 eeitryieksaaeea.vqqllkl 46 
                 e+i + ie ++ +e+  +q+ +l
  EHU01288.1 117 ETIVQLIEDAERKEKyASQMSTL 139
                 45555555554444313344444 PP

>> MatP_C  MatP C-terminal ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   1.6   2.3e-35   8.2e-32       1      60 []      88     147 ..      88     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 2.3e-35
      MatP_C   1 hTrKKSiDLdyavWqrLsklsqrrgsTLSetivqLieeaerkekyeeqvsslkedLkeLL 60 
                 hTrKKSiDL+y vWqrL+ l+qrr++TLSetivqLie+aerkeky++q+s+lk+dL+++L
  EHU01288.1  88 HTRKKSIDLEYLVWQRLAGLAQRRNCTLSETIVQLIEDAERKEKYASQMSTLKQDLQAIL 147
                 9*********************************************************98 PP

>> RHH_4  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     6e-08   0.00021      12      51 ..      91     130 ..      86     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6e-08
                 EEEEEEEHHHHHHHHHHHHHTT--HHHHHHHH.HHHHSS. CS
       RHH_4  12 rTSirLEpafWdaLeeiArregltvnaLiaeidadrrgea 51 
                 + Si LE  +W+ L  +A+r+++t+++ i ++ +d ++++
  EHU01288.1  91 KKSIDLEYLVWQRLAGLAQRRNCTLSETIVQLIEDAERKE 130
                 569**********************998877644433333 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.1   7.4e+03      24      41 ..      23      40 ..      21      48 .. 0.57
   2 ?   14.7   0.7   7.4e-06     0.026      33      81 ..     102     151 ..      86     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
  TMF_TATA_bd 24 lEgElaslkeelerleae 41
                 +EgEl + + el+  +a 
   EHU01288.1 23 REGELITRHLELSAAQAA 40
                 566666665555555444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.4e-06
  TMF_TATA_bd  33 eelerleaerd.eareeivklmkeneelkelkkeleelekeleelqerye 81 
                  ++l+ l++ r+ +++e iv+l+++ e+++++++++++l++ l+++  + +
   EHU01288.1 102 QRLAGLAQRRNcTLSETIVQLIEDAERKEKYASQMSTLKQDLQAILGKSD 151
                  45667777775378889*************************99877665 PP

>> PRP1_N  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00022       0.8      66     114 ..      45      93 ..      19     107 .. 0.82
   2 ?    4.0   0.3     0.016        59      92     131 ..     108     146 ..      99     150 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
                 --------------------HHHHHHHHHHHHHHTT-------...... CS
      PRP1_N  66 glfakaeydedDeeAdriyeeiderlderrkkrreakekeelekvreek 114
                  ++++++ d +D   ++i+ e+d+rl++  ++rr+++ ++e++++r+++
  EHU01288.1  45 LMMENNPVDVNDWINQHIHPELDNRLKQTIRARRKRHFNAEHQHTRKKS 93 
                 34567799********************999999999999999877765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.016
                 HHHHHHHHTT-------......-HHHHHHHHHHHHHTT- CS
      PRP1_N  92 derrkkrreakekeelekvreekpkiqeqFadlkrkLaev 131
                 ++rr+ + +++  + +e   e+k+k ++q++ lk++L+ +
  EHU01288.1 108 AQRRNCTLSETIVQLIE-DAERKEKYASQMSTLKQDLQAI 146
                 55666555555555555.445568999**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1219  (0.0679904); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1122.99
//
Query:       EHU01289.1  [L=357]
Description: outer membrane porin A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-73  243.9   3.4    1.2e-72  243.5   3.4    1.1  1  OmpA_membrane  OmpA-like transmembrane domain
    2.2e-24   85.7   0.0    3.7e-24   84.9   0.0    1.4  1  OmpA           OmpA family
    2.5e-21   76.6  11.8    3.4e-21   76.2  11.8    1.1  1  OMP_b-brl      Outer membrane protein beta-barrel domain
     0.0039   17.2   0.3       0.62   10.0   0.3    2.5  1  DUF2490        Protein of unknown function (DUF2490)
  ------ inclusion threshold ------
       0.01   15.9   0.4       0.26   11.4   0.0    2.3  2  Opacity        Opacity family porin protein
      0.041   13.6   0.0      0.071   12.8   0.0    1.3  1  Pilus_CpaD     Pilus biogenesis CpaD protein (pilus_cpaD)


Domain annotation for each model (and alignments):
>> OmpA_membrane  OmpA-like transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.5   3.4     4e-76   1.2e-72       1     182 [.      23     204 ..      23     205 .. 0.97

  Alignments for each domain:
  == domain 1  score: 243.5 bits;  conditional E-value: 4e-76
                    --TTEEEEEEEEEEESTSSSS........CSS-SSSSSEEEEEEEEEEEEETTEEEEEEEEEEEESSS-SS---S-EEEEEEEEEEEEEEESSSSE CS
  OmpA_membrane   1 pkantfYvGakaGwasfhdtinqekn...ekkknierdsvtagvFgGYqinnqlalElGYdylGrakakgkkkvvkhkaqgvtLslklsyellddl 93 
                    pk+nt+Y+Gak+Gw+++hdt+  + n   ++++++++++++ag+F+GYq+n++l++ElGYd+lGr++ kg+++++++kaqg++L++klsy+++ddl
     EHU01289.1  23 PKDNTWYTGAKLGWSQYHDTGYYG-NgyqNNDGPTHESQLGAGAFAGYQANPYLGFELGYDWLGRMPNKGNVTNGAFKAQGIQLAAKLSYPIADDL 117
                    799******************866.4467999**************************************************************** PP

                    EEEEEEEEEEEEEEEESSSSB.....EEEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSSSBTSTTS..-S-EEEEEEEEEEEE-SS CS
  OmpA_membrane  94 dvYakvGvalvradykvkedkkskekknhdtkvslllavGveyaitpelalrleYqylnnvgdlrkaakkykpdievvslglsyrfgqg 182
                    dvY+++G++++rad+  ++ +++++ ++hdt+vs+l+avGveya+t+++a+rl+Yq++nn+gd+++ +   +pd++++slg+syrfgq+
     EHU01289.1 118 DVYTRLGGMVWRADSTQQNVATGNRISDHDTGVSPLAAVGVEYALTKNWATRLDYQWVNNIGDAQTVGA--RPDNGMLSLGVSYRFGQD 204
                    ***************99999************************************************9..*****************8 PP

>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   1.2e-27   3.7e-24       1      91 [.     233     326 ..     233     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 1.2e-27
                 .B-TTS--B-GGGHHHHHHHHHHHH..S-S--...EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT------------- CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk..kpeqk...itveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekk 91 
                 +F +++s+L+p+ ++ald++ ++l       k   ++v G+td+ gse++n++LS+kRA++V +yl+++g+p+++is+ g+G+++p+t nn ++ k
  EHU01289.1 233 LFTFNKSTLKPEGQQALDQLYSQLSsmD--PKdgsVVVLGFTDRIGSEQYNQKLSEKRAQSVVDYLVSKGIPANKISARGMGESNPVTGNNCDSVK 326
                 599**********************653..33447*******************************************************998866 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2  11.8   1.1e-24   3.4e-21       2     178 .]       8     201 ..       7     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.1e-24
   OMP_b-brl   2 allllaalsaaaaaassfggfyvggglglskvkv.....dgvgsds......gfgfgvgagyefndnvgvegglsysgdkdysgsgktdikinllsvpv 89 
                 ++++la++++ a+aa  +  +y g+ lg+s +       +g+++++        g g++agy+ n+++g+e+g++++g   ++g + t+   + + +++
  EHU01289.1   8 IAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDtgyygNGYQNNDgpthesQLGAGAFAGYQANPYLGFELGYDWLGRMPNKG-NVTNGAFKAQGIQL 105
                 688999999999998888999999999999776633443444444466666468**********************99988888.34444556777*** PP

   OMP_b-brl  90 nagyafnlsdsvlpyggaGlg......ytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYry.tdlks..dadndlknntfqvgvgyrF 178
                 +a+++++++d + +y  +G          ++  +++    sd dt  +  +++Gveyal++nw+ +++Y+  +++++  + +  ++n  +++gv+yrF
  EHU01289.1 106 AAKLSYPIADDLDVYTRLGGMvwradsTQQNVATGNRI--SDHDTGVSPLAAVGVEYALTKNWATRLDYQWvNNIGDaqTVGARPDNGMLSLGVSYRF 201
                 ****************9999978777533334445566..9999999999********************85688665555555************** PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.3   0.00021      0.62      26      74 ..      50      98 ..      36     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
     DUF2490 26 Rlrddlsefnqillrpglgyklnkklsvslgyayeeekekkknntedri 74
                  +d  ++ +q+ + +  gy+ n++l + lgy +  + ++k n t   +
  EHU01289.1 50 QNNDGPTHESQLGAGAFAGYQANPYLGFELGYDWLGRMPNKGNVTNGAF 98
                456666788999999999**************99444455555554444 PP

>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.053   1.6e+02      79     123 ..      56      97 ..      28     111 .. 0.62
   2 ?   11.4   0.0   8.7e-05      0.26      79     132 .]     143     201 ..     119     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.053
     Opacity  79 asetrvGlGvlaGvkykltpnltldtgvrynrlGrl.eatrvktve 123
                 + e ++G G+ aG  y+ +p l  + g  y+ lGr+ ++ +v +  
  EHU01289.1  56 THESQLGAGAFAG--YQANPYLGFELG--YDWLGRMpNKGNVTNGA 97 
                 4567788888887..655555555555..55555553333443333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8.7e-05
     Opacity  79 asetrvGlGvla..Gvkykltpnltldtgvry.nrlGrlea..trvktveaslGlrykf 132
                  s+   G+  la  Gv+y+lt+n++   ++++ n++G  ++   r  +  +slG+ y+f
  EHU01289.1 143 ISDHDTGVSPLAavGVEYALTKNWATRLDYQWvNNIGDAQTvgARPDNGMLSLGVSYRF 201
                 5666677776654599*********99999975889988541256678889******98 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.071      32     120 ..     218     315 ..     202     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
  Pilus_CpaD  32 pivveeaeasl..dlkvasgdggLtaaqrarlealaeeyrre..gagaivisv.....psgssneaaaaaaaaeiravlaaaGvpaseisvrayqaaa 120
                 ++vv+ +  +l  d+ +  ++++L+++ +++l++l +++ +    +g++v+        s++ n++ +++ a+++ ++l+++G+pa++is+r++  ++
  EHU01289.1 218 APVVQTKRFTLksDVLFTFNKSTLKPEGQQALDQLYSQLSSMdpKDGSVVVLGftdriGSEQYNQKLSEKRAQSVVDYLVSKGIPANKISARGMGESN 315
                 566777766653356666899**************9988876565666666443556689999999*************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.54
# Mc/sec: 1981.67
//
Query:       EHU01290.1  [L=163]
Description: SOS cell division inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-47  160.8   2.5    1.2e-47  160.5   2.5    1.1  1  SulA      Cell division inhibitor SulA


Domain annotation for each model (and alignments):
>> SulA  Cell division inhibitor SulA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   2.5   6.8e-52   1.2e-47       8     115 .]       7     114 ..       1     114 [. 0.94

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 6.8e-52
        SulA   8 slslaakeaaessaeaktkGliselvysedqPvltql.llPllqqlgqqsrWllWltPqqklsreWlqqaglPlekvvqlsqinplstvdamekalrtG 105
                 ++++ ++++a+ s+ a+++G+i+el+yse +P ++q+ llPllqql+qqsrW+lWltP++klsr W+q+aglPlek++++++ +++++v+am+kalrtG
  EHU01290.1   7 RNVCPTHRYASPSDPASQSGWITELRYSE-KPGMMQMlLLPLLQQLSQQSRWQLWLTPAHKLSRVWMQEAGLPLEKSMHIADAERYNAVEAMIKALRTG 104
                 677899999*******************9.788888779************************************************************ PP

        SulA 106 nysvvlgWlp 115
                 nysvvl+W+p
  EHU01290.1 105 NYSVVLAWIP 114
                 ********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1195.88
//
Query:       EHU01291.1  [L=208]
Description: DNA transformation protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-26   92.9   0.0    1.6e-26   92.3   0.0    1.3  1  TfoX_N    TfoX N-terminal domain
    1.4e-21   76.4   0.0    2.6e-21   75.5   0.0    1.5  1  TfoX_C    TfoX C-terminal domain
  ------ inclusion threshold ------
      0.046   14.0   0.0      0.079   13.2   0.0    1.4  1  Cdd1      Pathogenicity locus


Domain annotation for each model (and alignments):
>> TfoX_N  TfoX N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   2.7e-30   1.6e-26       2      92 ..      14     104 ..      13     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2.7e-30
                 HHGGGS-EEEEEETTEEEEEETTEEEEEEETTEEEEE--HHHHHHHHHTT----EEEETTEEEE-SEEE--HHHHC-HHHHHHHHHHHHHH CS
      TfoX_N   2 llaplgevtsrrmFGgyglfvdglmfalvsdgelylradeetreefeaaglepftyakkgtpktlsYyrvpeelledpeqlarwvrlalea 92 
                 +laplg+v+sr++FGgy+l v+ ++fal++d++lylra+e++re++++++lep++++k+g+p+ l+Y+rv+e l+ dpe+l  +  ++l+ 
  EHU01291.1  14 QLAPLGNVESRTQFGGYALAVERVVFALIKDDQLYLRASEALREYVAKRPLEPLIFRKRGMPVSLNYFRVDENLWYDPEHLVALSAASLQT 104
                 8*************************************************************************************99986 PP

>> TfoX_C  TfoX C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   4.4e-25   2.6e-21       4      80 ..     117     193 ..     114     194 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 4.4e-25
      TfoX_C   4 rLkdLpNlglklerlLkkaGIktveeLrelGaveaylkiketgtsvslelLyaLegAlqgvhwndlpeeekeeLlek 80 
                 rLkdLpN +l+le +L+++GI++v+ L+e+Ga +++lk+k+ ++++ ++ L +L+gA++g h ++lp + k eL e+
  EHU01291.1 117 RLKDLPNVSLRLEMMLHEIGICSVKHLHEVGARACWLKLKRYNQHLGFKTLLVLQGAISGHHEAALPPTVKVELGEW 193
                 8*************************************************************************998 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.079       4      46 ..     114     156 ..     111     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
        Cdd1   4 alkelqdiPniGkalaedlvelGirsveelkgedpeelyekle 46 
                    +l+d+Pn+  +l ++l+e+Gi sv+ l++  + + + kl+
  EHU01291.1 114 GRVRLKDLPNVSLRLEMMLHEIGICSVKHLHEVGARACWLKLK 156
                 55789*************************9987777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1647.38
//
Query:       EHU01292.1  [L=715]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-99  331.8   8.3    2.9e-99  331.8   8.3    2.2  2  FUSC-like  FUSC-like inner membrane protein yccS
    1.7e-23   83.1  11.9    1.7e-23   83.1  11.9    3.0  3  FUSC_2     Fusaric acid resistance protein-like
    3.4e-09   35.8  34.3    3.2e-07   29.3  11.0    3.1  3  FUSC       Fusaric acid resistance protein family
  ------ inclusion threshold ------
      0.035   12.9   3.1       0.03   13.2   0.6    2.1  2  ALMT       Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.8   8.3  6.4e-103   2.9e-99       1     284 []      72     351 ..      72     351 .. 0.98
   2 ?    0.2   0.3     0.073   3.3e+02       7      33 ..     480     505 ..     452     607 .. 0.68

  Alignments for each domain:
  == domain 1  score: 331.8 bits;  conditional E-value: 6.4e-103
   FUSC-like   1 nLavtllcfalaslivqlllpypwlfvlglllstflftmlgalGqryatiafatLlvaiytmlgasqepeiwqqplllllGalwYgllsllwsllfpnr 99 
                 nL++tllcf +as++v+ll+p+p++f++gl++st++f++lgalGqryatiaf++Ll+a+ytmlg +   ++++qp+lll+GalwY+ll+ll +l+fp r
  EHU01292.1  72 NLLITLLCFCIASVSVELLFPHPLVFIIGLAGSTWGFILLGALGQRYATIAFGALLIAVYTMLGIGLFSQWYMQPMLLLVGALWYNLLTLLGHLMFPVR 170
                 79****************************************************************999****************************** PP

   FUSC-like 100 pvqqsLaelfealAdYleaKaslfepdreddleakrlaLaqqnakvvealnaareillsrlkskrgqpetksrrllrlyfvaqDihErassshydYeel 198
                 pvq++La +f++lA+Yl+aKa+lf+pd  ++++a+  + a+ n+++v++ln ++++l+srl+++rg+++t+  r l++yfvaqDihErasssh +Y+ l
  EHU01292.1 171 PVQEQLAASFSQLAHYLDAKANLFDPDAGEQDDAAFVKAAMVNSQLVAQLNLTKTTLQSRLRGDRGSRGTR--RSLHYYFVAQDIHERASSSHLQYHLL 267
                 ***************************99************************************999999..************************** PP

   FUSC-like 199 reafknsdvlfrfqrllelqakaceeiaqaillnkpyqhserleraleeleqslellakqnnekekellaalrallrnLrtierql 284
                 r   + +++lfrfqrll++qa+ac+++a+aill++  +h+ r+er++e le++++ la+  +++ +    al  llrnL++i++ql
  EHU01292.1 268 RGDWRYNEILFRFQRLLNMQAQACRQLARAILLRERWEHDGRFERVFERLENAIHRLAQS-EPD-AAHTGALLWLLRNLQAIDAQL 351
                 ********************************************************8888.444.56689*************997 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.073
   FUSC-like   7 lcfalaslivqlllpypwlfvlgllls 33 
                 + f +a+  vq++ ++ ++++l+l+++
  EHU01292.1 480 VMF-FAFRQVQYAHATLFITLLVLFCF 505
                 333.44444444444443333333332 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.6      0.15   6.6e+02      18      68 ..       5      55 ..       1      60 [. 0.69
   2 ?    1.2  10.1     0.083   3.7e+02      28      96 ..      61     135 ..      41     159 .. 0.64
   3 !   83.1  11.9   3.7e-27   1.7e-23       4     126 ..     412     531 ..     407     532 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.15
      FUSC_2 18 litaaivlsptlgasltravqRilGtvlGavlallllyllpgnlalallvf 68
                +i+ ++  +++l +s++r + Ril  + G+++   +l+ ++ +++l l v+
  EHU01292.1  5 AISMLSGWRKYLFNSTWRYLLRILFALSGCAAVPWILQQIEWTIPLTLGVV 55
                344444446789999999999999999999988888877776666655444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.083
      FUSC_2  28 tlgasltravqRilGtvlGavlallll.yllpgnlala..llvfllvfliafflkrny...alafifltllalll 96 
                 +l ++l   ++ +l t+l  ++a +++  l+p++l+++  l++ +++f+    l+++y   a++++++ ++++l 
  EHU01292.1  61 DLDDRLAGRLKNLLITLLCFCIASVSVeLLFPHPLVFIigLAGSTWGFILLGALGQRYatiAFGALLIAVYTMLG 135
                 555666666667777889999999988799****88882345555566665566666632333333333444333 PP

  == domain 3  score: 83.1 bits;  conditional E-value: 3.7e-27
      FUSC_2   4 liaellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lalallvfllvfliafflkrnyalafifltllalllyslaa 101
                  + ++ gl+rg+W+l+t ++v++p+++a+ +r+  Ri Gt++G++l+l ll+l+p+   +l+l+v++ v+++ +f++ +ya a++f+tll+l++++l  
  EHU01292.1 412 GFIQITGLERGYWILLTSLFVCQPNYSATQRRLALRIGGTLAGIALGLPLLWLVPSIeGQLVLIVVTGVMFF-AFRQVQYAHATLFITLLVLFCFNL-- 507
                 678899**************************************************7577777666665555.7999********************.. PP

      FUSC_2 102 gsgnpieialhRlldvliGiliall 126
                   g ++e+al R++d+l+G+++a+l
  EHU01292.1 508 -LGEGFEVALPRVVDTLLGCALAWL 531
                 .7999******************98 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0  13.4      0.86   3.9e+03     375     472 ..      48     146 ..      22     179 .. 0.85
   2 !   21.1  15.3   2.1e-08   9.6e-05     146     460 ..     163     507 ..     158     509 .. 0.63
   3 !   29.3  11.0     7e-11   3.2e-07       3     316 ..     398     710 ..     397     715 .] 0.72

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.86
        FUSC 375 avllaaivcslfatldnPapallqfligtllavlaallllfvvlPhvdg.fplLvlvlapplllgglllarprlagiglglavffalllapqnamtydf 472
                 + l+ ++v + +a ld+  +  l+ l+ tll+ ++a + + +++Ph       L+ +   ++llg+l +    +a ++l +av ++l +++ ++  + +
  EHU01292.1  48 IPLTLGVVAAALADLDDRLAGRLKNLLITLLCFCIASVSVELLFPHPLVfIIGLAGSTWGFILLGALGQRYATIAFGALLIAVYTMLGIGLFSQWYMQP 146
                 456778888899**********************************9996678**********************************999877665555 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.1e-08
        FUSC 146 salvfP.rsvapalrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayespri..rararalrrllsrmlallallsslarl 241
                 ++l+fP r v+++l+a++++l  + l + a + +++ g+    ++ a+++  ++  ++l++q+ + ++ +  r r ++  r ++r l  + +++ ++++
  EHU01292.1 163 GHLMFPvRPVQEQLAASFSQLA-HYLDAKANLFDPDAGE----QDDAAFVKAAMVNSQLVAQLNLTKTTLqsRLRGDRGSRGTRRSLHYYFVAQDIHER 256
                 5566663444444444444432.2222222222222222....23355555555555555555554443300444445556666666666666666666 PP

        FUSC 242 larlraeeaaavpe.........laallaelaal..................eaaaaaealeaalaalrarlralrraleadadtaalllarlaellae 313
                     + + +  + +         ++        l                  e+ +   + e   ++l+ ++ +l ++++     +a+   +l++ll++
  EHU01292.1 257 ASSSHLQYHLLRGDwryneilfrFQR-------LlnmqaqacrqlaraillrERWEHDGRFERVFERLENAIHRLAQSEP-----DAAHTGALLWLLRN 343
                 66655555544444553222233222.......22222223555555555543334455566666666666666666666.....55555556666666 PP

        FUSC 314 laqllaslraleaaiaa...................arraerlarhrdhlaall.nglraalaillaglfWiatgWpsGatavllaaivcslfatldnP 392
                 l+++ a+l++ e + a+                      + rl+ h  ++ al+  ++r  +++++++ f  +tg + G+ ++l+   vc    +   +
  EHU01292.1 344 LQAIDAQLASIETEQAQavdpqhsdnllsreelsgwSDIKLRLSLHLSPASALFrHAVRMSIVMCVGYGFIQITGLERGYWILLTSLFVC--QPNYSAT 440
                 666666666666666666669999*****99999665555669*******99873699****************************9999..******* PP

        FUSC 393 apallqfligtllavlaallllfvvlPhvdgfplLvlvlapplllgglllarprlagiglglavffal 460
                 ++ l   + gtl++++++l l ++++P ++g  +L++v ++++++    +   ++  i+l +++ f l
  EHU01292.1 441 QRRLALRIGGTLAGIALGLPL-LWLVPSIEGQLVLIVVTGVMFFAFRQVQYAHATLFITLLVLFCFNL 507
                 ****************99765.6678***************999988888777777777776666654 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 7e-11
        FUSC   3 lFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrnfrsY 101
                 ++a++  + +++ ++   + +L++ yw ++T ++V+qP+  a+  + + R+ GTl+G+a ++ l+ ++v + +  l+++ + +g++ ++   ++++ + 
  EHU01292.1 398 RHAVRMSIVMCVGYGFIQITGLERGYWILLTSLFVCQPNYSATQRRLALRIGGTLAGIALGLPLL-WLVPSIEGQLVLI-VVTGVMFFAFRQVQYAHAT 494
                 6899999999999999999*********************************************9.5555555555544.3467777777777777777 PP

        FUSC 102 afvLAGYTaalialpavadPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalageegaeareaararlaadilal 200
                  f      ++l +l  ++   + F++A+ Rv + +lG   a l    ++P    ++l a + ++l++ ++++ a++++  ++++ + a +   +d+   
  EHU01292.1 495 LF------ITLLVLFCFNLLGEGFEVALPRVVDTLLGCALAWLAVTFIWPDWRFRQLPAVATRTLNANCRYLDAIMEQYHQGKDNRLAYRIARRDAHNA 587
                 77......58999999999999********************************************************999999544444444456666 PP

        FUSC 201 ealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal..........eaaaaaealeaalaalrarlral 289
                 +a ++ ++   ++  +++++lr+   ++l l  +l s+ + l ++r++ ++ +  l all+++             ++++a+e  ++  ++l++  +  
  EHU01292.1 588 DAELASVVSNMSSETRTNPKLRESAFQLLCLNHSLLSYISALGAHRDKVTDPA--LLALLDDTVCYvedvlqtdivSDSRAEEMRRELEQRLTRFTAGS 684
                 66666666666666777777777777777777777777777777776666553..77777777666776677555423222222222222222222222 PP

        FUSC 290 rraleadadtaalllarlaellaelaq 316
                 ++       ++  ll +l+ ++a+l++
  EHU01292.1 685 DSPT-PLVLQQLGLLVALLPEIARLRR 710
                 2222.2444444444444444444444 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.33   1.5e+03      77     106 ..      53      85 ..      50      91 .. 0.67
   2 ?   13.2   0.6   6.6e-06      0.03      42     222 ..     423     591 ..     395     606 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.33
        ALMT  77 algvsela...sssgkileeivigvsvFiiaal 106
                 +++++ la    ++   l++++i+++ F+ia++
  EHU01292.1  53 GVVAAALAdldDRLAGRLKNLLITLLCFCIASV 85 
                 445555553334454559999999999999986 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 6.6e-06
        ALMT  42 vWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatflrliPaikarYdYgvlvflLTFclvvvsgyr 140
                  W  lT   v + +  AT ++   R  +Tl + +l+l   +l  s+     ++v++v++ ++ ++  f       ++  +Y+ +   +T  lv++  + 
  EHU01292.1 423 YWILLTSLFVCQPNYSATQRRLALRIGGTLAGIALGLPLLWLVPSIEG---QLVLIVVTGVMFFA--F-------RQ-VQYAHATLFIT-LLVLFCFNL 507
                 677888888888888888888888888888888888888888766655...33333333222222..1.......22.34666666666.589999999 PP

        ALMT 141 tdevielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeyleekeker..kileyeakeedsly 222
                  +e +e+A  R++  ++G++++ +   f++P w   +L     + l+   ++l++++++y + k +    +i + +a++ d  +
  EHU01292.1 508 LGEGFEVALPRVVDTLLGCALAWLAVTFIWPDWRFRQLPAVATRTLNANCRYLDAIMEQYHQGKDNRLayRIARRDAHNADAEL 591
                 *************************************************************97666546666666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5282.70
//
Query:       EHU01293.1  [L=147]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-27   95.6  29.0    2.8e-17   63.1  14.1    2.1  2  YccF      Inner membrane component domain
  ------ inclusion threshold ------
          2    8.3   7.9       0.38   10.6   3.6    2.0  2  DUF5362   Family of unknown function (DUF5362)


Domain annotation for each model (and alignments):
>> YccF  Inner membrane component domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   6.9   1.3e-13   1.2e-09       1      50 [.       4      53 ..       4      54 .. 0.98
   2 !   63.1  14.1   3.2e-21   2.8e-17       1      51 []      77     127 ..      77     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.3e-13
        YccF  1 lgNilWlllfGwwlaliyllaglllfitiigipygrvlfklakyllwPFG 50
                ++Nil ++l+G+ + l +l+a l+  ++i+++p  r ++++ k+++ PFG
  EHU01293.1  4 VLNILNFVLGGFYTTLSWLFATLISIVLIFTLPLTRSCWEITKLSFLPFG 53
                68************************************************ PP

  == domain 2  score: 63.1 bits;  conditional E-value: 3.2e-21
        YccF   1 lgNilWlllfGwwlaliyllaglllfitiigipygrvlfklakyllwPFGk 51 
                 ++Ni+W+++fGwwl+l ++ +g++ +i iigip+g++ fk+a ++lwP G+
  EHU01293.1  77 FLNIFWFIFFGWWLCLSHISVGIVQCISIIGIPVGLANFKIAAIALWPVGR 127
                 58***********************************************96 PP

>> DUF5362  Family of unknown function (DUF5362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.19   1.7e+03      29      35 ..      25      31 ..       2      41 .. 0.53
   2 ?   10.6   3.6   4.3e-05      0.38      14      49 ..      93     129 ..      80     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.19
     DUF5362 29 iiigvll 35
                 +i ++l
  EHU01293.1 25 TLISIVL 31
                2333333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4.3e-05
     DUF5362  14 lliilGaltcLsIigiiigvllI.ivglklfkaakai 49 
                 + i +G+++c+sIigi +g+    i+++ l+ ++ ++
  EHU01293.1  93 SHISVGIVQCISIIGIPVGLANFkIAAIALWPVGRRV 129
                 57889**************976536778888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1117.08
//
Query:       EHU01294.1  [L=684]
Description: DNA helicase IV [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-65  217.5   4.3    9.1e-65  217.5   4.3    2.4  4  Helicase_IV_N    DNA helicase IV / RNA helicase N terminal
    6.5e-39  134.3   0.0    9.8e-38  130.4   0.0    2.3  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    8.3e-31  107.3   0.0    1.7e-30  106.2   0.0    1.5  1  AAA_19           AAA domain
    4.1e-14   52.7   0.0    7.1e-13   48.6   0.0    2.2  2  UvrD_C           UvrD-like helicase C-terminal domain
    1.3e-10   41.0   0.1    8.4e-05   22.3   0.0    2.7  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    2.8e-08   33.7   0.2    5.2e-05   23.1   0.1    2.3  2  AAA_30           AAA domain
     0.0011   18.7   0.1        0.3   10.8   0.0    3.4  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0012   18.5   0.0      0.029   14.0   0.0    2.6  3  AAA_12           AAA domain
     0.0012   19.3   1.0      0.004   17.6   1.0    1.9  1  STAT_int         STAT protein, protein interaction domain
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.22   11.3   0.0    1.3  1  DUF1351          Protein of unknown function (DUF1351)
       0.16   11.7   0.0       0.31   10.8   0.0    1.5  1  DEAD             DEAD/DEAH box helicase
        1.7    9.0   9.5        8.9    6.7   6.5    3.2  2  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   4.3   6.1e-68   9.1e-65       1     162 []       1     164 [.       1     164 [. 0.99
   2 ?   -2.1   0.2       2.2   3.3e+03     108     108 ..     327     327 ..     258     365 .. 0.61
   3 ?   -3.1   0.0       4.3   6.5e+03     101     111 ..     451     461 ..     410     490 .. 0.54
   4 ?   -3.6   0.0       6.4   9.5e+03      12     128 ..     515     549 ..     504     560 .. 0.47

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 6.1e-68
  Helicase_IV_N   1 MelkatklgkllaqhpynrveLdeeglevsgkkseelipfnelssiaikrGlvWgeLefelkeqkvvrlhGlpweetqqfaqtllssyqqWskeqv 96 
                    Melkat++gk+laqhpy+rv+L+++g+evsg+k+e+lipfn+ls+i++krG+vWgeLef l+++kvvrlhG++w+etq+f ++l++s+q+Ws+e++
     EHU01294.1   1 MELKATSMGKRLAQHPYHRVRLLSAGVEVSGDKHEYLIPFNQLSDITCKRGMVWGELEFLLADNKVVRLHGTEWQETQRFFHYLMQSWQSWSQEMS 96 
                    9*********************************************************************************************** PP

  Helicase_IV_N  97 qaladvlqkkeeeieefvqqqkylstsevanlvekisaqlkalplplerleqfep..ealkdlkdWle 162
                    +++a vlq + + i+ f++q+++l++se++++++ki++q++alplpl+r+eqf++  e+++ ++ Wl+
     EHU01294.1  97 EVCAAVLQALRDDIQGFSEQERWLKRSELQAIKDKIRKQFDALPLPLSRIEQFDScrENWAFCQYWLQ 164
                    ******************************************************************96 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
  Helicase_IV_N 108 e 108
                    +
     EHU01294.1 327 Q 327
                    2 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.3
  Helicase_IV_N 101 dvlqkkeeeie 111
                    ++l+++ ++++
     EHU01294.1 451 SALRQQNTRTT 461
                    23333333333 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 6.4
  Helicase_IV_N  12 laqhpynrveLdeeglevsgkkseelipfnelssiaikrGlvWgeLefelkeqkvvrlhGlpweetqqfaqtllssyqqWskeqvqaladvlqkke 107
                    ++q++ ++                                                                                   l+k  
     EHU01294.1 515 FIQQNPHQ-----------------------------------------------------------------------------------LRKPL 527
                    33333333...................................................................................33333 PP

  Helicase_IV_N 108 eeieefvqqq.kylstsevanl 128
                    +++++ ++++ + l++ ++++l
     EHU01294.1 528 NSLTKGNKKSiALLPHDQLEAL 549
                    3333333222344444444444 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   6.6e-41   9.8e-38       1     312 [.     197     488 ..     197     491 .. 0.75

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 6.6e-41
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln++q ea+++ +  +lv+A+AGsGKT vl++r   l++ +   +d+il++ F + AaeE++ Ri+++l+                    +++  T
     EHU01294.1 197 LNESQAEAVVNGEDAVLVLAGAGSGKTSVLVARAGWLLQRRLAAADQILLLAFGRHAAEEMNDRIQSRLGA------------------GDIQART 274
                    699*****************************************************************996..................589**** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSC..HSHTTTTHHHHHHHHHHHHHHCCCCCH......HHHCCCHHHHHCHHHH CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkellek..saddslnldkkkleklikelsksrnik......keelslskskaeelre 184
                    +H++++ i+++  ++  + ++++   +          l+ +  ++  +++++ n   + l+ + +        +       ++  l+++ a  l+ 
     EHU01294.1 275 FHALALHIIREGSHKQPVISKLESDPDARRT-----WLIDHWRQQcnEKKAQANGWRQWLRDELE-W------EvsegpfWQDDRLAQRLASRLER 358
                    ***********99999977777766666632.....22222222111222222222222222221.1......12222223333333344444433 PP

                    HHHHHH.HTTCCTTHHCHSS....TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHH CS
  UvrD-helicase 185 lvskak.ekqlspkelkkaf....ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyri 275
                    ++  +  ++  ++   ++ +       s++ k +a +lk  ++ +k e a+Dfs l+h+++++le+      ++ + +k+il+DE+QD +++ +++
     EHU01294.1 359 WLGLMRmHGGAQAAMIEDVPdalrDVFSKRIKLMAPLLKAWKSALKDEGAVDFSGLIHQAIAILEK-----GRFVSPWKHILVDEFQDISPQRAAL 449
                    33332212223333333322444467799999*********************************9.....58999******************** PP

                    HHHHHTTTTT..EEEEE-GGG--GGGGTB-THHHHHHHH CS
  UvrD-helicase 276 lkllasghee..lfmvGDpkQsIYgFRgAdielflkkkk 312
                    l+ l +++    lf vGD+ Q+IY+F gA+++l   + +
     EHU01294.1 450 LSALRQQNTRttLFAVGDDWQAIYRFSGAEMSLTTAFHH 488
                    *******98899*******************99888766 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   1.2e-33   1.7e-30       1     145 [.     201     475 ..     201     476 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 1.2e-33
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae....atTiHrlal.................. 77 
                 q eav    e+ +lv+aG+G+GKT vl+++  +l++++  ++++ill+af ++Aa+e+++r+++ +++    a+T+H+lal                  
  EHU01294.1 201 QAEAV-VNGEDAVLVLAGAGSGKTSVLVARAGWLLQRRLAAADQILLLAFGRHAAEEMNDRIQSRLGAgdiqARTFHALALhiiregshkqpviskles 298
                 67888.888999**************************************************7776668999*************************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  EHU01294.1 299 dpdarrtwlidhwrqqcnekkaqangwrqwlrdelewevsegpfwqddrlaqrlasrlerwlglmrmhggaqaamiedvpdalrdvfskriklmapllk 397
                 *************************************************************************************************** PP

      AAA_19  78 ...........ldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkallgek..kklllvGDpdQliyvf 145
                            +df +l+++a ++le+    +++ + + +++vDEfqd++++  +Ll+al +++  ++l++vGD+ Q+iy f
  EHU01294.1 398 awksalkdegaVDFSGLIHQAIAILEK---GRFV-SPWkHILVDEFQDISPQRAALLSALRQQNtrTTLFAVGDDWQAIYRF 475
                 ******************999999885...5667.7888**********************8884445************99 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13     2e+02       2      42 ..     497     535 ..     496     569 .. 0.76
   2 !   48.6   0.0   4.8e-16   7.1e-13     281     346 ..     580     661 ..     546     664 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.13
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnr.ralekek..ktvekgek 42 
                 vL + yR + ++ ++an+f++++ ++ r     k  ++ +kg+k
  EHU01294.1 497 VLDTTYRFNDRIGEVANRFIQQNPHQlR-----KplNSLTKGNK 535
                 68889***************99999933.....22344444443 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 4.8e-16
                 xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 281 skkk...ekipiiTiHqAKGlEFdvVflagleegt..fPsyrskk...........ekrleEEkRlfYVaiTRAkkrLfisy 346
                  k+     +i  +TiH++KG   d+V+++gl++g+  fP  + ++               +EE+Rl YVa+TRA++++++ +
  EHU01294.1 580 AKTRwpkMRIDFMTIHASKGQQADYVIVLGLQQGKegFPAPQRESimeqgllpqpeDFPDAEERRLAYVALTRARQQVWLLF 661
                 444344489***********************98766997666667888999999744579****************99865 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.7e-06      0.01       4      21 ..     591     608 ..     589     616 .. 0.89
   2 !   22.3   0.0   5.6e-08   8.4e-05      31      51 ..     639     659 ..     630     660 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.7e-06
    UvrD_C_2   4 altihkaQGsefpaVivf 21 
                 ++tih ++G+++++Viv 
  EHU01294.1 591 FMTIHASKGQQADYVIVL 608
                 69**************96 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 5.6e-08
    UvrD_C_2  31 gelrrrlLYtavTRAreklil 51 
                 +++ rrl+Y+a+TRAr++++l
  EHU01294.1 639 DAEERRLAYVALTRARQQVWL 659
                 3457****************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   3.5e-08   5.2e-05       2      77 ..     197     279 ..     196     314 .. 0.75
   2 !    8.4   0.0    0.0011       1.6      41     128 ..     380     471 ..     350     529 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.5e-08
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelg.......ieastiakll 77 
                 ln++Qa+av   ++++d  +++ ++AG+GKt +l a +  + ++      ++++lA    aA+++++ ++       i+a+t + l 
  EHU01294.1 197 LNESQAEAV---VNGED-AVLVLAGAGSGKTSVLVARAGWLLQRRlaaaDQILLLAFGRHAAEEMNDRIQsrlgagdIQARTFHALA 279
                 788999888...56665.7889999*********8876666655567889****************866544444456999999875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0011
      AAA_30  41 aweaa.ggrviglAptgkaAkv.Laeelgi.eastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekag..akvilvGDerQl 128
                 a+++   +r+ ++Ap  ka k  L++e  +  +  i++ +  l++   ++p + ++vDE   ++ +  aall+a+++++  +++  vGD+ Q 
  EHU01294.1 380 ALRDVfSKRIKLMAPLLKAWKSaLKDEGAVdFSGLIHQAIAILEKGRFVSPWKHILVDEFQDISPQR-AALLSALRQQNtrTTLFAVGDDWQA 471
                 4444445778888888888777455443344566677777777754566677**********98665.567777776542378889****985 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.054        80       2      19 ..     213     230 ..     212     268 .. 0.85
   2 ?   -3.0   0.0       3.2   4.7e+03      26      60 ..     284     318 ..     270     321 .. 0.71
   3 !   10.8   0.0    0.0002       0.3      65     230 ..     433     657 ..     422     661 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.054
  Viral_helicase1   2 vvhGvpGcGKStlirkll 19 
                      +v + +G+GK+++++  +
       EHU01294.1 213 LVLAGAGSGKTSVLVARA 230
                      68899*******998765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.2
  Viral_helicase1  26 tvnrptaelltegkpklpnlsvrtvdsflmalvks 60 
                      ++++    ++++  +++ +++++ +d++ +++ ++
       EHU01294.1 284 REGSHKQPVISKLESDPDARRTWLIDHWRQQCNEK 318
                      44555455556666899999999999999998764 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0002
  Viral_helicase1  65 ililDEylllh...aGyilllaalskaklvilfGDplQipfhsrnasfllahlpssl...shrvgrrttyllpsdvaeilsakvgteveversg 152
                       +++DE++      a+++ +l ++++  +++++GD  Q  +    a+++l   + ++    +r    tty++++   e+ ++   +++  +  +
       EHU01294.1 433 HILVDEFQDISpqrAALLSALRQQNTRTTLFAVGDDWQAIYRFSGAEMSLTTAFHHYfgeGDRCVLDTTYRFNDRIGEVANRF-IQQNPHQLRK 525
                      56788877643111456666888888889999999999999887777777666666666668999999999999999999999.4444444445 PP

  Viral_helicase1 153 elkvetepkgqekvlvyltftqalkealgvr.....................................evttvhevqGltfdkVtlvllketdl 209
                      +l++ t+++ +   +++l++ q  +eal  +                                     +++t h   G+++d V+++ l++ ++
       EHU01294.1 526 PLNSLTKGNKK--SIALLPHDQ--LEALLNKlsgyvkadervlllaryhylrpelldkaktrwpkmriDFMTIHASKGQQADYVIVLGLQQGKE 615
                      55445555555..555555544..3333333334566667777888999999999999999999999999999999999999999999988877 PP

  Viral_helicase1 210 elis.....................esrenllvAlTRhrksl 230
                         +                     e+r   +vAlTR+r+++
       EHU01294.1 616 GFPApqresimeqgllpqpedfpdaEERRLAYVALTRARQQV 657
                      7666899999999999999999999889***********987 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9   4.4e+03      43      95 ..     163     214 ..     155     216 .. 0.61
   2 ?    0.6   0.0      0.24   3.7e+02      16      37 ..     494     515 ..     480     520 .. 0.79
   3 !   14.0   0.0   1.9e-05     0.029     117     197 ..     566     662 ..     532     664 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.9
      AAA_12  43 LkdaesvkkreleaqealeepleplvfidvekseeekekkeksyiNeeEaelv 95 
                 L+++e++++++++ +++    ++   f+++ +s+  +e++++ ++N e+a lv
  EHU01294.1 163 LQQGETAMTQRNR-DWTAAMLTRYRDFFATVESTPLNESQAEAVVNGEDAVLV 214
                 6777777666666.333333333345666666666666666888888888777 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.24
      AAA_12  16 kvvlLdtqYRmhpeIsrfpskl 37 
                    +Ldt YR +++I + +++ 
  EHU01294.1 494 DRCVLDTTYRFNDRIGEVANRF 515
                 6789***********9999875 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.9e-05
      AAA_12 117 itpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekk...................eigflkderrlNValTRAkskliivG 196
                 ++ Y+     l +k k   ++ ++ +i+  t+ +  G++ d++i+   ++ +++                   ++   +++r   ValTRA+++++++ 
  EHU01294.1 566 LARYHYLRPELLDKAK---TRWPKMRIDFMTIHASKGQQADYVIVLGLQQGKEGfpapqresimeqgllpqpeDFPDAEERRLAYVALTRARQQVWLLF 661
                 4444444443333333...3334456******************99999986666777777888777887755444445555556***********985 PP

      AAA_12 197 n 197
                 +
  EHU01294.1 662 D 662
                 5 PP

>> STAT_int  STAT protein, protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.0   2.7e-06     0.004      29     107 ..      67     146 ..      64     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-06
    STAT_int  29 vRhyLaewiEsqdweeiapdnp.edeslatalleelleeleekasrlseeenflqklklreiaknlqkkyqenPleLari 107
                 vR +  ew E+q+  +  +++  + +++++++  ++l++l++ ++ +se+e+ l++ +l+ i+++++k++++ Pl L ri
  EHU01294.1  67 VRLHGTEWQETQRFFHYLMQSWqSWSQEMSEVCAAVLQALRDDIQGFSEQERWLKRSELQAIKDKIRKQFDALPLPLSRI 146
                 777788999999965554444416889999999******************************************99876 PP

>> DUF1351  Protein of unknown function (DUF1351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.22      72     130 ..      86     147 ..      75     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
     DUF1351  72 deFeakikelekkikeaidkideqikefeekekeekkkevkaliselaeeae...veleeie 130
                 ++ +++ +e+++   ++ + + ++i+ f e+e+  k++e++a+  ++ ++     ++l++ie
  EHU01294.1  86 QSWQSWSQEMSEVCAAVLQALRDDIQGFSEQERWLKRSELQAIKDKIRKQFDalpLPLSRIE 147
                 5667788899999999********************99888776666665555458888884 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.31       5      97 ..     202     299 ..     195     305 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
                 HHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST........SEEEEEETTSSHHHHHHHH CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid........lrvlliiggvaardqlskl 94 
                 aea   ++ g++ vlv a  GsGKT + +  +  ++++++   + ++l+++  r  ae++ +++++++   d        l ++ i +g+ ++  +skl
  EHU01294.1 202 AEA---VVnGEDAVLVLAGAGSGKTSVLVARAG-WLLQRRLAAADQILLLAFGRHAAEEMNDRIQSRLGAGDiqartfhaLALHIIREGSHKQPVISKL 296
                 333...441446899************777776.66676899999999999999999999999999988533335566656666667777777777777 PP

                 HTT CS
                 xxx RF
        DEAD  95 dng 97 
                 +++
  EHU01294.1 297 ESD 299
                 655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.5   6.8e+03      92      97 ..     123     128 ..      77     184 .. 0.60
   2 ?    6.7   6.5    0.0059       8.9      18     162 ..     204     457 ..     197     465 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.5
      AAA_16  92 aeleaw 97 
                 +el+a 
  EHU01294.1 123 SELQAI 128
                 222222 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0059
      AAA_16  18 rvrsgrpelvllsGesGvGKsslv.....rellralekd........ggiflrgkcdqlesa.............ipysalaqalareellrqllde.. 88 
                 +v  g+  +vl+   +G+GK+s++     + l+r+l ++        g +++++ +d+ +s              +++ ++ +   +  ++ +l+++  
  EHU01294.1 204 AVVNGE-DAVLVLAGAGSGKTSVLvaragWLLQRRLAAAdqilllafGRHAAEEMNDRIQSRlgagdiqartfhaLALHIIREGSHKQPVISKLESDpd 301
                 555665.79999999********9888777788877777655555554444444444443335555554444433444555566556666666666688 PP

      AAA_16  89 ...............aesaeleawrekleeala................................................................av 108
                                +++a+++ wr+ l+++l+                                                                  
  EHU01294.1 302 arrtwlidhwrqqcnEKKAQANGWRQWLRDELEwevsegpfwqddrlaqrlasrlerwlglmrmhggaqaamiedvpdalrdvfskriklmapllkaWK 400
                 866666666666666555566666666666666999999999999999999999999999999999999999988888888888888888888888755 PP

      AAA_16 109 pelagaeasrllellkrllallsrder...p.lvlvlDdlqwadeaslqllaaLlrll 162
                 ++l++++a ++  l+ +++a l++ +r   p   +++D++q++ ++ ++ll+aL +  
  EHU01294.1 401 SALKDEGAVDFSGLIHQAIAILEK-GRfvsPwKHILVDEFQDISPQRAALLSALRQQN 457
                 667777779999999999999998.774544556999********9999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4588.87
//
Query:       EHU01295.1  [L=152]
Description: methylglyoxal synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-17   62.5   0.0    4.4e-17   62.1   0.0    1.2  1  MGS       MGS-like domain


Domain annotation for each model (and alignments):
>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   2.4e-21   4.4e-17       2      95 .]      26     118 ..      25     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2.4e-21
                 HHHHHHHHHHTT..CEEEEEHHHHHHHH.HTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHH.CHHHHHHHHHHHTTSHEES CS
         MGS   2 lvelakklkelg..fellATgGTakllk.eagipvtevvektgegerlggrveildaikngeidlvintlypfkatva.kdgykirraaenidIplpt 95 
                 l++++++ ++++  + l+ATg+T++l++  +g++    v+ + +g ++gg+++++++i++g+id++ ++++p++a ++ +d++++ r+a++++Ip++t
  EHU01295.1  26 LLDWVTRNQSALepHILYATGTTGNLINrHTGLN----VNAMLSG-PMGGDQQVGALIAEGKIDALMFFWDPLNAVPHdPDVKALLRLATVWNIPVAT 118
                 6788888888877999************778***....*******.*************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1196.48
//
Query:       EHU01296.1  [L=212]
Description: uncharacterized UPF0319 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  116.4   0.0      2e-33  116.2   0.0    1.0  1  DUF2057   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2057  Uncharacterized protein conserved in bacteria (DUF2057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.1e-37     2e-33       1     191 [.      23     203 ..      23     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 1.1e-37
     DUF2057   1 tLkvpdniellavdgqkvksslfkgaksltLtpGkhqivvrykdlfkddsdsdsqdlvkSdplivtfdakadqeltlelpklenerqakafakspkitl 99 
                 tLk++++i+l+++dg+k+++sl+kga+sl+L+ G+hq ++r++++ +  +++     ++S p+iv f+a+a +++t++lp l+++r+   f+++ +++l
  EHU01296.1  23 TLKLDPQITLMVLDGRKISGSLLKGADSLELERGQHQFLFRVEQPADPRKTALP--GYQSVPMIVAFTAAA-KTITIRLPPLTSARERHNFDRTLAFRL 118
                 89********************************************66666555..************776.7************************** PP

     DUF2057 100 tdksgksveakqdklkkegfqlgrdyeqelaeynrsgaaaaaataatataataavaaaaskssataqgqnqaeqmLqywylqAdketrkeFl 191
                 +d++gk++ +  d+l+    ++g d+e+++++ynr g aa   + ++ ++ ta++++a+ +++  a + + ++ + q+w+++ d++tr++F 
  EHU01296.1 119 VDEKGKEIFSVRDRLP---TSPGVDIEKAMVKYNRMGLAA---SVPQFANLTAPSPSAQLTADL-AWSVQSTTPSIQRWFERFDEATRQQFI 203
                 ****************...*********************...677777777777777666555.4444445557****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 1968.90
//
Query:       EHU01297.1  [L=137]
Description: CoA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-38  129.2   0.0    1.1e-37  129.1   0.0    1.0  1  CoA_binding_2  CoA binding domain
    5.5e-07   30.2   0.0    8.7e-07   29.5   0.0    1.3  1  CoA_binding    CoA binding domain


Domain annotation for each model (and alignments):
>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   1.2e-41   1.1e-37       1     115 [.      14     130 ..      14     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 1.2e-41
                    --EEEET--S-TTSHHHHHHHHHHHHT--EEEESSS-..SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHH CS
  CoA_binding_2   1 rtiaVvGasdnpgkfgykvlryllehglpvvpVnpke..eeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpgsedeea 94 
                    ++ia+vGasd+p++++y v++yll++g++v+pV pk   +++lg+++y slae p+++d+vdvf+++ea+ e+++ea+a+ga ++wlq g+ +e+a
     EHU01297.1  14 KRIALVGASDRPERPSYGVMKYLLDQGYEVIPVSPKLagKTLLGQTAYGSLAEVPGKIDMVDVFRNSEAAWEVAQEAIAAGADSLWLQIGVINEQA 109
                    78**********************************999*************867***************************************** PP

                    HHHHHHTT-EEE.ES-HHHHH CS
  CoA_binding_2  95 aelaeeagirvvgdrCilveg 115
                    a la++ag++v++drC ++e 
     EHU01297.1 110 ALLAQDAGMTVIMDRCSKIEI 130
                    ******************986 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   9.7e-11   8.7e-07       2      90 ..      12      98 ..      11     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 9.7e-11
                 TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEE CS
  CoA_binding  2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgi 90
                 ++++++++Ga+ +     y + + l  +  +v++v+p+ +g++ lg ++y s++e++ k  +d+  ++  +e+a e+++e+++ag    
   EHU01297.1 12 RTKRIALVGASDRPERPSYGVMKYLLDQGYEVIPVSPKLAGKTLLGQTAYGSLAEVPGK--IDMVDVFRNSEAAWEVAQEAIAAGADSL 98
                 6789**************888888888999*****************************..99999******************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1184.68
//
Query:       EHU01298.1  [L=105]
Description: DNA-binding protein, hemimethylated [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-20   72.2   0.0    4.3e-20   72.0   0.0    1.0  1  YccV-like  Hemimethylated DNA-binding protein YccV like


Domain annotation for each model (and alignments):
>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   2.4e-24   4.3e-20       2      96 ..       5      96 ..       4      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 2.4e-24
   YccV-like  2 kyrvGqvvrhkrygyrGVivgwdeecaaseewiekigveelsegrnqpfYhvlvdtedsekvsvrYvaeenlelikssepiehpeigkyFkrfdg 96
                k+ +Gq vrh++ g  GViv++d+e+a +e+ +++ig    +  r+ p+Yhv++++e+ ++v++ Yvae +l  ++s+e+ e+p+++++  ++++
  EHU01298.1  5 KFGIGQQVRHRLSGVLGVIVDVDPEYALDEPHLDEIGAA--DTMRSAPWYHVVMEDEQGSQVHT-YVAEIQLAGETSPEHPEQPSMDELAASVRK 96
                8***********************************995..68999*************98885.**********************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1001.80
//
Query:       EHU01299.1  [L=396]
Description: LSU m5C1962 methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-28   99.5   0.0    2.7e-28   98.9   0.0    1.2  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
    4.1e-21   74.5   0.1      1e-20   73.3   0.1    1.7  1  PUA_3            PUA-like domain
    3.6e-11   43.1   0.1    5.6e-11   42.5   0.1    1.3  1  Methyltransf_31  Methyltransferase domain
    1.7e-10   40.8   0.0    2.7e-10   40.2   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
      1e-05   25.1   0.0    1.8e-05   24.4   0.0    1.3  1  MTS              Methyltransferase small domain
    1.5e-05   25.6   0.0    9.5e-05   23.0   0.0    2.2  2  Methyltransf_25  Methyltransferase domain
    0.00072   19.2   0.0     0.0012   18.4   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
     0.0015   17.8   0.0      0.002   17.4   0.0    1.1  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
      0.002   18.7   0.1      0.068   13.8   0.0    2.6  2  Methyltransf_11  Methyltransferase domain
     0.0032   16.9   0.0     0.0046   16.4   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0064   16.4   0.0      0.015   15.2   0.0    1.6  1  PUA              PUA domain
  ------ inclusion threshold ------
      0.034   13.9   0.0      0.056   13.2   0.0    1.3  1  Met_10           Met-10+ like-protein
      0.042   13.2   0.0      0.061   12.7   0.0    1.2  1  Methyltransf_10  RNA methyltransferase
      0.065   14.0   0.1       0.35   11.6   0.0    2.2  2  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.0   2.1e-31   2.7e-28      84     266 ..     181     371 ..     151     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 2.1e-31
  Methyltrans_SAM  84 espvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytcgfsvaaiaggaskvvnvdmargslnkgrdnhrlnghdlrrvs 177
                      +   + e+ +k  +di    ++g +ld r  r   +  akd +vln f+yt gf+v+a+ gg+++v+ vd ++ +l+  r+n  ln+ dl r +
       EHU01299.1 181 ALLTITEHDMKLLVDIQGGHKTGYYLDQRDSRYATRRYAKDARVLNCFSYTGGFAVSALIGGCQEVISVDTSQDALDVARQNVELNKLDLARAK 274
                      456799**************************************************************************************** PP

  Methyltrans_SAM 178 flgydifkswgkikksg.pydlviidppsfqkgsfal...tkdykkilrrlpellveggevlacvnspavspdflieemaeea....pslefve 263
                      f   d+fk   + +  g ++dl+i+dpp f      l    + yk i     +ll +gg +l+   s  +++d++ + +a+ a     +++fve
       EHU01299.1 275 FQRDDVFKLLRRYRDEGeKFDLIIMDPPKFVENKSQLmgaCRGYKDINMLAIQLLNPGGILLTFSCSGLMATDLFQKIIADAAldagRDVQFVE 368
                      **************998469**********7655444222699******99***********99989888888754444433311124678887 PP

  Methyltrans_SAM 264 rld 266
                      ++ 
       EHU01299.1 369 QFR 371
                      765 PP

>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.1     8e-24     1e-20       1      64 []       5      68 ..       5      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 8e-24
       PUA_3  1 viLkkkaekrlrqGhPwvfsneiasvegeledGdvVdvfsekgkflGtGyynpqskiavRilsr 64
                +iL k++ek+l+++hPwvfs+++a+ eg++++G+ +dv +++gk+l+++ y+pqs+i++R++s+
  EHU01299.1  5 LILGKGREKSLLRRHPWVFSGAVARLEGKAQQGETIDVCDSNGKWLARAAYSPQSQIRARVWSW 68
                6899**********************************************************98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   4.4e-14   5.6e-11      16     123 ..     233     353 ..     219     377 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.4e-14
  Methyltransf_31  16 eltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieeleklled..ekfDlilsnevl...naladpdkile....... 95 
                       ++  +   +g   ev+++D s++a+ +Ar+n + ++ld  +++F++ d+++l   + d  ekfDli+ + +    n    + + ++       
       EHU01299.1 233 GFAVSAL--IGGCQEVISVDTSQDALDVARQNVELNKLDlaRAKFQRDDVFKLLRRYRDegEKFDLIIMDPPKfveN----KSQLMGacrgykd 320
                      4444444..566667****************9888888877***********665588889********94443341....2222223333555 PP

  Methyltransf_31  96 ...eiervlkpggilliedpr..llaelpakve 123
                          ++++l+pggill+ +++  ++++l +k+ 
       EHU01299.1 321 inmLAIQLLNPGGILLTFSCSglMATDLFQKII 353
                      55699****************654444444444 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.1e-13   2.7e-10      39     122 ..     218     302 ..     212     329 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.1e-13
                    CHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T.TTEEEEES-HHHHCTS--SS-EEEEEEE--S CS
  Cons_hypoth95  39 eiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee.etaelkedaleallklakkkeefdivflDPP 122
                    + ++arvL++f+ +G+ ++ Al  g+++++ v++++ a+ + ++n+e  kl+  +++  ++d ++ l++   ++e+fd++ +DPP
     EHU01299.1 218 YAKDARVLNCFSYTGGFAVSALIGGCQEVISVDTSQDALDVARQNVELNKLDLaRAKFQRDDVFKLLRRYRDEGEKFDLIIMDPP 302
                    57899*******************************************9999967777788888999999999************ PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.4e-08   1.8e-05      56     152 ..     244     352 ..     231     363 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-08
                 .EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTST.....TS-EEEEEE---.STTTCHCHHHH...HHHHHHHHHHHEEEEEEEEEEEETT CS
         MTS  56 aevtlvdvdarAlesakenleankle...vevvasdvleeve.....ekkfdlivsNPP.fhagkatelav...aeeliaeAkeaLkegGeLliVanrk 142
                 +ev  vd +  Al++a++n+e nkl+   +++   dv++ +       +kfdli++ PP f ++k +   +    +++   A + L++gG Ll    + 
  EHU01299.1 244 QEVISVDTSQDALDVARQNVELNKLDlarAKFQRDDVFKLLRryrdeGEKFDLIIMDPPkFVENKSQLMGAcrgYKDINMLAIQLLNPGGILLTFSCSG 342
                 46889*********************999999****98865422222589*********6555555433331115678888999999999999888777 PP

                 SCHHHHHHHH CS
         MTS 143 lgyeslleel 152
                 l + +l +++
  EHU01299.1 343 LMATDLFQKI 352
                 7777766665 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.9   2.4e+03      58      76 ..      68      85 ..      26      95 .. 0.52
   2 !   23.0   0.0   7.4e-08   9.5e-05      12      70 ..     235     299 ..     224     318 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
                     BSSSTTTEEEEEEESTGGG CS
  Methyltransf_25 58 lpfedgsfDlvvssgalhh 76
                     + ++d+s+D+ + +  ++h
       EHU01299.1 68 W-QQDESIDIAFFVRRFQH 85
                     2.24556666666555555 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 7.4e-08
                      HHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBS....SSTTTEEEEEE CS
  Methyltransf_25  12 tlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlp....fedgsfDlvvs 70 
                      +  ++   g ++v+ vD s+++l+ ar+++e ++l   +++f++ d+ +l      e ++fDl+++
       EHU01299.1 235 AVSALIG-GCQEVISVDTSQDALDVARQNVELNKLdlaRAKFQRDDVFKLLrryrDEGEKFDLIIM 299
                      4333322.579*******************99988999*********665323227999*****98 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.4e-07    0.0012       4      80 ..     224     302 ..     221     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.4e-07
  Methyltransf_15   4 ilDlfsGaGGnviq.falvfekviaieinleklacaqhNaevYgv.sdkitlvlgdvfellaklklekikvdlvflSpP 80 
                      +l  fs +GG ++  +    ++vi+++++++ l +a +N e+      + ++   dvf+ll++ + e  k+dl+++ pP
       EHU01299.1 224 VLNCFSYTGGFAVSaLIGGCQEVISVDTSQDALDVARQNVELNKLdLARAKFQRDDVFKLLRRYRDEGEKFDLIIMDPP 302
                      7899999999877514445899*********************9977999****************************9 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06     0.002      42     128 ..     213     301 ..     202     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
                 HHHHHH-S-EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--.GGEEEE-S-HHHHHC...--SS-EEEEEE-- CS
         TRM  42 llkkklgekikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneve.eivvineddAnvlla...ekkkrfdviDlDP 128
                 + +++ +++ +vl+ +s +G  a+  +    g +ev+  D s+ A+++ ++Nv+ln+ +  + ++++dd   ll+    + ++fd i +DP
  EHU01299.1 213 YATRRYAKDARVLNCFSYTGGFAVSALI--GGCQEVISVDTSQDALDVARQNVELNKLDlARAKFQRDDVFKLLRryrDEGEKFDLIIMDP 301
                 5567778889999999999987777665..599*************************97689***********98888899********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.31     4e+02      27      83 ..      46      95 ..      24      97 .. 0.62
   2 !   13.8   0.0   5.3e-05     0.068       8      67 ..     233     299 ..     229     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.31
                     -HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHH CS
  Methyltransf_11 27 skemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalke 83
                     + + l  a++++s++  +++ +v + +    +d+s+D+ +    ++h   +++ l+e
       EHU01299.1 46 NGKWL--ARAAYSPQS-QIRARVWSWQ----QDESIDIAFFVRRFQHALVWREWLAE 95
                     44444..333444444.3444444444....59********9999998777777766 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.3e-05
                      SHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT..SS-TT..-EEEEEE CS
  Methyltransf_11   8 GrlaealakrgarvvgvDlskemlklakekaseegl...kvefvvadaekl..pfedn..sfDlvvs 67 
                      G  + al   + +v+ vD+s+ +l++a+++++ ++l   + +f++ d+ kl   ++d+  +fDl+++
       EHU01299.1 233 GFAVSALIGGCQEVISVDTSQDALDVARQNVELNKLdlaRAKFQRDDVFKLlrRYRDEgeKFDLIIM 299
                      555566664559***********************9999999*******965679995559**9986 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.6e-06    0.0046     173     231 ..     232     298 ..     214     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.6e-06
        PrmA 173 GiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellk........eekadviv 231
                 G  a+ a+  g ++v+ vD+ + A++va++N+elNk++  + + ++ ++++k         ek+d+i+
  EHU01299.1 232 GGFAVSALIGGCQEVISVDTSQDALDVARQNVELNKLDLaRAK-FQRDDVFKllrryrdeGEKFDLII 298
                 5578999999*************************99874443.345555533333334466777776 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.015       6      56 ..       8      59 ..       4      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
                -HHHHHHHHT.T-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-H CS
         PUA  6 ddgAvkalls.gasLlapGvvevegdfeegdvVaivdedgelvavGlanyss 56
                 +g  k ll+    ++   v + eg+ ++g++++++d +g+ +a++     s
  EHU01299.1  8 GKGREKSLLRrHPWVFSGAVARLEGKAQQGETIDVCDSNGKWLARAAYSPQS 59
                566667777755579999***************************9877666 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.3e-05     0.056      98     177 ..     218     302 ..     178     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-.GGG---.....TT-EEEEEE--T CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileD.grevir.....eqladrvvmnlp 177
                   ++ +V++ f   G fa+++   +  ++v+++d   ++    ++n++lNk++     ++ D + +++r      +++d ++m+ p
  EHU01299.1 218 YAKDARVLNCFSYTGGFAVSALI-GGCQEVISVDTSQDALDVARQNVELNKLDLARAKFQRDdVFKLLRryrdeGEKFDLIIMDPP 302
                 5667889*************996.89999***********************9776666654144554445444455667777666 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.7e-05     0.061     130     242 ..     247     355 ..     231     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                      EEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS------------...---.....---------T CS
  Methyltransf_10 130 vgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGqk 223
                      ++ ++++ +l+ a+++ve n kl+ a    ++ +  +++    +e e++d+ + +PP + + +    g+ r  k+++      a   ln gG  
       EHU01299.1 247 ISVDTSQDALDVARQNVELN-KLDLARAKFQRDDVFKLLRRYRDEGEKFDLIIMDPPKFVENKSQLMGACRGYKDINM----LAIQLLNPGGIL 335
                      67899999************.88877666667778899999999*************999999999999999998855....477888888888 PP

                      TTSHHHHHHHH.HHHHHHHH CS
  Methyltransf_10 224 aelyceGGeva.fikkliee 242
                        + c G  ++ + +k+i +
       EHU01299.1 336 LTFSCSGLMATdLFQKIIAD 355
                      88888886554244555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         5   6.4e+03      64      86 ..      67      93 ..      27      95 .. 0.57
   2 ?   11.6   0.0   0.00027      0.35      20      72 ..     243     299 ..     230     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5
  Methyltransf_12 64 g....ssfDlvvasnvlhhlkdirevl 86
                     +    +s D+ +    ++h   +re+l
       EHU01299.1 67 SwqqdESIDIAFFVRRFQHALVWREWL 93
                     033334778887777777777777776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00027
  Methyltransf_12  20 dieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDlvva 72 
                        e++ vD s++a+ d +++  + ++++ ++ +++ +d+++l  +     ++fDl+++
       EHU01299.1 243 CQEVISVDTSQDAL-DVARQNVELNKLDLARAKFQRDDVFKLLRRyrdegEKFDLIIM 299
                      568899********.77777777788999999999999999988899999******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3275.76
//
Query:       EHU01300.1  [L=92]
Description: acylphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-24   85.5   0.0    2.7e-24   85.4   0.0    1.0  1  Acylphosphatase  Acylphosphatase


Domain annotation for each model (and alignments):
>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   1.5e-28   2.7e-24       1      83 [.       6      89 ..       6      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.5e-28
  Acylphosphatase  1 vrllvtGrVQgvgFRkfvrrlAkelglkGyvrNlsdgsVeivaegeeekvekfleelksgppk.arvdeveveeleeeeefkdF 83
                     ++++v+G VQgvgFR+ ++ +A+ l+++Gy+rNl+dg+Ve++a g+ e+v+++l++lk+g p+ arv++v ve+  + +  ++F
       EHU01300.1  6 YKAWVQGTVQGVGFRYSTQAKANTLNVQGYARNLEDGRVEVLACGDAEQVNALLDWLKAGGPRtARVEKVLVEPHHAVDMPHGF 89
                     6789*******************************************************77777********998777666777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 689.32
//
Query:       EHU01301.1  [L=108]
Description: sulfur transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-45  153.1   0.0    3.4e-45  153.0   0.0    1.0  1  DsrC             DsrC like protein
  ------ inclusion threshold ------
      0.053   13.1   0.0      0.069   12.8   0.0    1.1  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0   0.0   3.8e-49   3.4e-45       2     107 .]       3     108 .]       2     108 .] 0.99

  Alignments for each domain:
  == domain 1  score: 153.0 bits;  conditional E-value: 3.8e-49
        DsrC   2 vngkeieldeegfLkdledwseevaealakeegieLteehwevikflreyyeeygvapairklvkalkkelgeekgnskelyelFpkgpakqackiAGl 100
                 +ng ei++d+eg+Lk+++dwse +a ++a+ee i++t++hwev++f+r++y e++++pa+r+lvka++k++geekgns++l++lFp+gpakqa+kiAGl
  EHU01301.1   3 YNGDEIAVDAEGYLKNHQDWSEGLALQIAAEEAITMTDAHWEVVRFVRDFYLEFNTSPAVRMLVKAMAKKYGEEKGNSRYLFRLFPEGPAKQATKIAGL 101
                 799************************************************************************************************ PP

        DsrC 101 pkPtgCv 107
                 pkP++C+
  EHU01301.1 102 PKPAKCL 108
                 ******7 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.8e-06     0.069      20     109 ..      17      98 ..      15     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.8e-06
  Acyltransferase  20 aNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvviFPEGtrsregel 109
                       NHq +   l l+ ++      ++  ++ +++   ++++++++  +++ ++ R  + ++a + ++ +e+ ++ +l  +FPEG  ++++++
       EHU01301.1  17 KNHQDWSEGLALQIAA------EEAITMTDAHWEVVRFVRDFYLEFNTSPAVR--MLVKAMAKKYGEEKGNSRYLFRLFPEGPAKQATKI 98 
                      6999999999999988......67778888887777*****************..88888888888889999999*******88887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 880.28
//
Query:       EHU01302.1  [L=218]
Description: inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-41  141.4  33.5    3.9e-41  141.2  33.5    1.0  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2  33.5   2.2e-45   3.9e-41       2     207 .]      18     212 ..      17     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 2.2e-45
      Bax1-I   2 aflrkvYgllalgllltalvaavvlsspaqlflslhivlflvvilapl.alvflslsaarlkkkssalalallllftlleGlslspillvyt....gai 95 
                 ++lr++Y ll+l+l+++al+a++   ++      l  +  l+++l+++ +l+f   +++rl ++++   +++ ++ft++ G++l+pil+ y     g++
  EHU01302.1  18 KVLRNTYFLLGLTLAFSALTATASTLLA------LP-APGLILMLVGFyGLMF---LTYRLADSPTG--ILAAFAFTGFLGYCLGPILSTYLaagmGDV 104
                 79*******************9994443......32.3334444444405556...67788766666..****************************** PP

      Bax1-I  96 ilqaflltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlpssalelaisylgvllfsglilyDtqkiierageygeedailaalsLyl 194
                 i+ a+ +ta++f+++s+y+ltt+rd+s+lgg+++ag+++l++a ++nlFl+ +al+lais+l++l+ +g il++t++ii+  g   ++  i a++sLy+
  EHU01302.1 105 IALALGGTALVFFCCSAYVLTTGRDMSFLGGMMMAGFVVLLVAVVANLFLHLPALQLAISALFILFSAGAILWETSNIIH--GGETNY--IRATVSLYV 199
                 *******************************************************************************5..455789..********* PP

      Bax1-I 195 dfinlFlslLril 207
                 +++n+F+slL+il
  EHU01302.1 200 SLYNIFVSLLSIL 212
                 ***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 1795.09
//
Query:       EHU01303.1  [L=530]
Description: glucose-1-phosphatase/inositol phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-19   69.4   6.9    4.8e-09   36.1   0.0    3.1  3  His_Phos_2  Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
       0.21   11.1   5.5       0.35   10.4   5.5    1.2  1  VIR_N       Virilizer, N-terminal
       0.28   11.3  45.2      0.025   14.7  39.9    1.8  2  HC2         Histone H1-like nucleoprotein HC2


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     8e-13   4.8e-09       2     154 ..      31     150 ..      30     219 .. 0.69
   2 !   35.2   0.0   1.5e-12   8.9e-09     271     376 ..     265     356 ..     237     365 .. 0.86
   3 ?   -6.0   6.9         3   1.8e+04     148     222 ..     454     504 ..     425     526 .. 0.32

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 8e-13
                 EEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCH.TCCH CS
  His_Phos_2   2 LksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYp.lgLl 99 
                 L++v + +RH  R+P  ++                         a  +k+++p            +++  g+ lt+ G +  + +G++ rq    +gL 
  EHU01303.1  31 LQQVLMFSRHNLRAPLADNG---------------------SVLAQSTKKSWP-----------EWEVPGGQ-LTTKGGVLEVYMGNYTRQWLAqQGLV 96 
                 66777777777777777776.....................456778889999...........89999999.************************** PP

                 TTSS--..TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCC CS
  His_Phos_2 100 rlhlty..kdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaak 154
                 +++ ++  ++++++a s +R++a+A+ f+ G +++++++   +++  ++    ++ +
  EHU01303.1  97 KNGACPdsNSVFVYANSLQRTVATAQFFVNGAFPGCDITVTHQDEMGSM---DPVFN 150
                 ***9999**************************9999544333333333...33333 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 1.5e-12
                 .....TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEE CS
  His_Phos_2 271 ipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaaldrlsaspelpymsqivfelye 369
                 i ++y+ +  + ++ +  ++ pl++ i+++l ++     + + +++ l ++hds+i+sll+aL++   + +e          + + +p ++q+vfe++ 
  EHU01303.1 265 IKNGYQDTLFTTPDVARNVAAPLVDYIRSQLIDQD----KADSPKVTLMVGHDSNIASLLSALQVKPYDLPE----------TYEKTPIGGQVVFERWH 349
                 8999999999************************9....9***************************99999..........9**************** PP

                 ETCTTTE CS
  His_Phos_2 370 dssekkf 376
                 d +++k 
  EHU01303.1 350 DAKNNKD 356
                 8444433 PP

  == domain 3  score: -6.0 bits;  conditional E-value: 3
                 -TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHHH CS
  His_Phos_2 148 ddsnaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedmdeniakrleqlcpgesnllaker 222
                 d   a+k   d+                      +k +k  de+ k  k+  ++ + ++ +++  +++  +a++ 
  EHU01303.1 454 DNAAAQKAADDK----------------------VKADKAADEKAKADKAAAQKAADEKASAD--KAAAQKAADD 504
                 222222222222......................11111111111111111111111111111..1111111122 PP

>> VIR_N  Virilizer, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.5   5.8e-05      0.35     119     250 ..     363     505 ..     361     521 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.8e-05
       VIR_N 119 vYGtvervlsedrvsipPppPapPvk............elekedqynaspvrpeprePrtpelipaytgnvastpPpdddeeedaavpetveeekeens 205
                 vY t+++    +  s + pp    ++             +e+  q  +s ++    +P  +   pa  +n    +P + +++++a   +++ ++   ++
  EHU01303.1 363 VYQTADQLRDAQVLSLKTPPKRVTLQlagcptdangycSWEQFTQVLNSALQGTALQPAAA-EQPAASANAGAANPAESKADDKASADKATADNAAAQK 460
                 67777777777777766555322222444555577888999999***************99.6788889999999999988886666666654444444 PP

       VIR_N 206 ekredyleeesPeertslkaeekdseaereer..esseeierdeees 250
                    ++++ ++  +e+++    +   ++   e+   ++   ++  +++
  EHU01303.1 461 AADDKVKADKAADEKAKAD--KAAAQKAADEKasADKAAAQKAADDK 505
                 4444444444444443333..22222222222111111111111111 PP

>> HC2  Histone H1-like nucleoprotein HC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.33     2e+03      73     111 ..     163     176 ..     157     202 .. 0.47
   2 ?   14.7  39.9   4.2e-06     0.025      54     161 ..     421     525 ..     407     530 .] 0.58

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
         HC2  73 kavakkvvakkkvakKavAKKaaakKvvakkvvakKtva 111
                 ka a  ++a+                          + a
  EHU01303.1 163 KALADMTAANE-------------------------KLA 176
                 11111111111.........................111 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.2e-06
         HC2  54 vakkkvaakkaaakkaavkkavakkvvakkkvakKavAKKaaakKvvakkvvakKtvakkaaaakKpaakkavakkaaarKaaakKavaKkaastckkk 152
                  a+ ++aa + a    +    +  k+ a k++a  a+A+Kaa  Kv a k++  K+ a k aaa+K+a  ka a kaaa+Kaa  Ka a +aa + +k 
  EHU01303.1 421 AAAEQPAASANAGAANPAESKADDKASADKATADNAAAQKAADDKVKADKAADEKAKADK-AAAQKAADEKASADKAAAQKAADDKAKAENAANAQNK- 517
                 344444444433333333444456677777777777777777777777777777777777.6777777777777777777777777777777743222. PP

         HC2 153 hkkkaackr 161
                    ++ +k+
  EHU01303.1 518 -TDNSPAKQ 525
                 .22233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1944  (0.108428); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 3475.43
//
Query:       EHU01304.1  [L=457]
Description: succinate-semialdehyde dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.9e-132  440.7   0.0   5.5e-132  440.6   0.0    1.0  1  Aldedh           Aldehyde dehydrogenase family
    0.00044   20.3   0.7     0.0014   18.7   0.7    1.8  1  baeRF_family2    Bacterial archaeo-eukaryotic release factor 
  ------ inclusion threshold ------
       0.15   12.2   0.0       0.39   10.8   0.0    1.7  1  Peptidase_S78_2  Putative phage serine protease XkdF


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.6   0.0  9.2e-136  5.5e-132       9     462 .]       4     453 ..       1     453 [. 0.97

  Alignments for each domain:
  == domain 1  score: 440.6 bits;  conditional E-value: 9.2e-136
                 EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   9 ievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek 106
                 +++inPa+++ + + p+ +++ v +a+++A + f+  w+k  ++ R ++L+k+adl+ +r+eela++ ++e+Gk + ++r+ev+ +++++ryyae+ae+
  EHU01304.1   4 YQSINPANNQLMKSWPSHDSAAVTQALETADRLFHsDWSKGAIQPRLQVLKKLADLIDDRAEELATIASKEMGKLIGQSRGEVKICAQIARYYAEHAER 102
                 789*****************************99978************************************************************** PP

                 .HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-T CS
      Aldedh 107 .legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehp 204
                  l+ +  +s e  +a+v ++P+Gv +a+ PWNfP   +++ lap la GN v+ K a+ +p++a ++ +l++eag P+g+ + +  s ++v+e l++++
  EHU01304.1 103 iLKPQPYES-EFGDAWVEYHPIGVLVAVEPWNFPYYQLMRVLAPNLALGNPVLAKHANIVPHCADVFEKLVKEAGAPEGAWTNLFISTDQVAE-LIADD 199
                 555566555.6899******************************************************************9999886766665.66668 PP

                 TESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTS CS
      Aldedh 205 evdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpld 303
                 +v+ v++tGs + g  +a++a+k+lk+ tlElGG++ ++v+edaDld+av++ v++ ++n GQvC+aa+r++++e+i+d f++k+ +a+++  +gdpld
  EHU01304.1 200 RVQGVALTGSERAGSAVAEQAGKHLKKSTLELGGNDVFVVTEDADLDEAVRQGVQARLSNCGQVCTAAKRFILNEKIADTFIDKFSAALNAAVLGDPLD 298
                 *************************************************************************************************** PP

                 TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE CS
      Aldedh 304 edtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvf 402
                 e+t++GPl s+++++++ k+v+ea+++gakl++Gg   +a    g++++Pt+l+++t+d++ + +E FGPV+ v+ + +++ea+++aNd++yGL+++v+
  EHU01304.1 299 EKTTLGPLSSADARDRLVKQVDEAVANGAKLVTGG---KAVAGVGCYYQPTLLTHITRDNPAYFQEFFGPVAQVYVVASDDEAVALANDSHYGLGGSVW 394
                 ***********************************...88999******************************************************** PP

                 -SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 403 tkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 t+d++r +++a+++e+G+v iN++++ +ae  pfgGvk+Sg+Gre +  g++e+ + k v
  EHU01304.1 395 TRDIARGRKLASAIETGMVFINSQSDTSAEL-PFGGVKRSGYGRELSDLGIKEFANQKLV 453
                 *****************************99.***********************99965 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.7   2.3e-07    0.0014      65     132 ..     190     257 ..     178     267 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.3e-07
  baeRF_family2  65 eevdrlvresgaelVvlaGDvrarsllrdeLpervrelvvevegggraagadrealaeevaealaerr 132
                    ++v++l+++ +++ V l+G  ra s+++++ ++++++ + e+ g+     +++++l+e+v++ ++ r 
     EHU01304.1 190 DQVAELIADDRVQGVALTGSERAGSAVAEQAGKHLKKSTLELGGNDVFVVTEDADLDEAVRQGVQARL 257
                    89************************************************************999876 PP

>> Peptidase_S78_2  Putative phage serine protease XkdF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.6e-05      0.39      74     115 ..     169     209 ..     154     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.6e-05
  Peptidase_S78_2  74 deevgeeeikkGtWvvlvkvaddevwekikkgeitgySiagt 115
                      ++ v+e ++++G+W   + + +d v e i ++ ++g+ ++g 
       EHU01304.1 169 EKLVKEAGAPEGAW-TNLFISTDQVAELIADDRVQGVALTGS 209
                      55688999******.78889999***************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3255.16
//
Query:       EHU01305.1  [L=76]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-38  128.7   2.8    8.5e-38  128.5   2.8    1.0  1  YccJ      YccJ-like protein


Domain annotation for each model (and alignments):
>> YccJ  YccJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   2.8   4.8e-42   8.5e-38       1      67 []       9      76 .]       9      76 .] 0.99

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 4.8e-42
        YccJ  1 hdvaeWasvRetsleiaeaifelandDeklaekiWe.eGsDevLklafaktdkdkLfWgeetieRknv 67
                h+v eWas+R+ts eiaeaife+an+De+lae+iW+ +GsD+vL++af+ktd+d+L+W+++t+eRknv
  EHU01305.1  9 HHVGEWASLRHTSPEIAEAIFEVANYDERLAEEIWRqQGSDDVLIRAFEKTDQDVLTWDDKTVERKNV 76
                9**********************************989*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 609.18
//
Query:       EHU01306.1  [L=199]
Description: WrbA family flavoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-13   50.5   0.0    2.3e-13   50.1   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase
    4.8e-07   30.1   0.0    6.3e-07   29.7   0.0    1.4  1  Flavodoxin_1  Flavodoxin
    1.4e-06   28.6   0.0      0.012   15.8   0.0    2.2  2  Flavodoxin_5  Flavodoxin domain
    5.9e-05   22.9   0.0    7.6e-05   22.5   0.0    1.1  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   5.2e-17   2.3e-13      14     145 ..      13     142 ..       2     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 5.2e-17
                 -HHHHHHHHHHCCT-T..T-CEEEEETTTS..--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT- CS
     FMN_red  14 sntrklaewaaealkea.gaevelidladl.ilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgK 110
                 +  +++a+++ae +++  ga+v+++++ +  +++   +  +    + ++ + ++  e + + da+i++tP+ +g++sg++ +++Dr++  + + +l gK
  EHU01306.1  13 GHVETMANAVAEGARKVpGAQVDVMRVPETmDAQ--RFA-EV-GGKTQQSAPEATPEILPDYDAIIVGTPTRFGNMSGQMRTFWDRTGGLWASGALYGK 107
                 66689*********7779***********96666..333.22.23467888888889999*************************************** PP

                 EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEEC CS
     FMN_red 111 pvalvavgggrrgglraeeqlrqvlaelgaivvpr 145
                 ++ +++  g+  g +++  +    la++g+++vp 
  EHU01306.1 108 IASVFTSTGTGGGQEQTITSVWTTLAHHGMVIVPI 142
                 *****777777777778888889999999999986 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.4e-10   6.3e-07       1     124 [.       6     118 ..       6     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.4e-10
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGH.HHHHHHHHHHCHHGCCSTTTTEEEEEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppenge.sffqdllelkgdeledgdlsgvrfavfglG 96 
                   +lY+S++G+ e++A+++ae++++  +    v+++++ e    +++++++ v+   + +  p+ + e ++++d +   +     + + +++ ++  ++
    EHU01306.1   6 VLYYSMYGHVETMANAVAEGARK--VPGAQVDVMRVPE---TMDAQRFAEVGGK-TQQSAPEATPEiLPDYDAIIVGT----PTRFGNMSGQMRTFW 92 
                   89*******************95..5568888888885...4777777778888.56699******999999999984....456899999****** PP

                   CTTSSSTTHHHHHHHHHHHHTTCEEESS CS
  Flavodoxin_1  97 dsayenFcaagkkldekleelGaerllk 124
                   d+++    +a ++l  k+  ++ ++ + 
    EHU01306.1  93 DRTGGL--WASGALYGKIASVFTSTGTG 118
                   ******..**********9999888764 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   6.7e-05       0.3       1      47 [.       5      51 ..       5      53 .. 0.91
   2 !   15.8   0.0   2.8e-06     0.012      39      85 ..      65     116 ..      45     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.7e-05
  Flavodoxin_5  1 lilYsSrdGqTkkiaeriaeelree.gelvdvedvekesedlesydav 47
                  l+lY S +G+ ++ a+++ae  r+  g++vdv+ v +e+ d + + +v
    EHU01306.1  5 LVLYYSMYGHVETMANAVAEGARKVpGAQVDVMRV-PETMDAQRFAEV 51
                  79*********************99*********9.588888887776 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.8e-06
  Flavodoxin_5  39 edlesydavvigasvyygkllpelakFvekh.....reaLstkpvalfsvsl 85 
                   e l +yda+++g++ + g+++++++ F ++        aL+ k   +f+   
    EHU01306.1  65 EILPDYDAIIVGTPTRFGNMSGQMRTFWDRTgglwaSGALYGKIASVFTSTG 116
                   46789**********************9987555555566666665555555 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.7e-08   7.6e-05       2     138 ..       3     119 ..       2     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.7e-08
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCC..HHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHH CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaak..layeekpadveseqiekllaadaivlqfPlwwfgvPail 96 
                   kiL+++ +  +  +    +a+a++e+++k   ++v+v  + ++    ++++ +a+   ++++      e+   e l + dai++++P  + +++ ++
    EHU01306.1   3 KILVLYYSMYG--HV-ETMANAVAEGARKVPGAQVDVMRVPET----MDAQRFAEVggKTQQ---SAPEATP-EILPDYDAIIVGTPTRFGNMSGQM 88 
                   89999999998..56.89***********96699********6....999999973333333...4556666.78********************** PP

                   HHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-G CS
  Flavodoxin_2  97 KgwiDrvltagfafyteeggegrgggLkgkkalvivttGgpe 138
                     + Dr    g            +g+L gk a v ++tG  +
    EHU01306.1  89 RTFWDRT--GGL-W--------ASGALYGKIASVFTSTGTGG 119
                   ******5..555.2........24788899999999998773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1685.50
//
Query:       EHU01307.1  [L=86]
Description: DUF6 family transmembrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-05   22.9   4.0    8.4e-05   22.8   4.0    1.2  1  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   4.0   4.7e-09   8.4e-05       4      49 ..      16      61 ..      13      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.7e-09
        EamA  4 illallaalfwaiyfvlskillrkvspltltfvrfliagillliia 49
                +l+++  +++w+ +f++  +++++  p++++++rf  a++ll +++
  EHU01307.1 16 ELVLIFITVIWGGTFLVVHQAMHYSGPFFFVGLRFATAALLLAFFI 61
                57889999***************************99999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 706.84
//
Query:       EHU01308.1  [L=208]
Description: hypothetical protein CKS_4058 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-18   64.8  15.0    4.3e-12   46.4   5.2    2.0  2  EamA      EamA-like transporter family
    8.2e-06   25.4   0.4    1.4e-05   24.6   0.4    1.3  1  TPT       Triose-phosphate Transporter family
     0.0076   14.6   1.9     0.0093   14.3   1.9    1.1  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   2.2   4.3e-09   2.6e-05      86     135 ..       1      50 [.       1      52 [. 0.96
   2 !   46.4   5.2   7.1e-16   4.3e-12       3     134 ..      63     192 ..      61     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.3e-09
        EamA  86 lkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++++s+s+ +++t+l + ++ +l +l+l+ +++l+ +lgi l+++G++l+
  EHU01308.1   1 MQTISSSQSAFLTALYVPVVPLLQWLFLRLPPKLMAWLGISLAFCGLILV 50 
                 5899********************************************98 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 7.1e-16
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                 g+   ll++l  a  ++l+ ++  +v+  ++tf+++++a++  + ++ +++++ + ls  ++l  ++    +++l ++ +++a++++s+++a++i + e
  EHU01308.1  63 GEAATLLSTLAIAGEIILISRFAGQVDVRRVTFIQLTVASLCAFCFMIPNGESVPALST-PLLVSAVGLGAASALIQVTMNWAQRSVSPTRATVIYAGE 160
                 667789*************************************9999999999933333.3333344444899************************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvll 134
                 Pv++ + + l  ge+l    +lg +li++Gv++
  EHU01308.1 161 PVWAGVVGRLA-GERLPAAAILGGILIVCGVIV 192
                 ***********.*******************98 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.4   2.3e-09   1.4e-05      34     135 ..      93     193 ..      89     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.3e-09
         TPT  34 vsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGv 132
                 v+ +ql+v s++++++++ + ++ p +s+++l++ + l+ + +l +v+ + +  +v+   + ++ a eP+++ ++ rl  ge+l+ + +l  + iv Gv
  EHU01308.1  93 VTFIQLTVASLCAFCFMIPNGESVPALSTPLLVSAVGLGAASALIQVTMNWAQRSVSPTRATVIYAGEPVWAGVVGRL-AGERLPAAAILGGILIVCGV 190
                 899*********9999999***********************************99999******************9.9******************* PP

         TPT 133 ala 135
                 +++
  EHU01308.1 191 IVS 193
                 986 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   1.9   1.6e-06    0.0093      19     182 ..      37     200 ..      22     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-06
     DUF2070  19 lliillalligllaflssk.......lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall..qalvllalvlsl 108
                 +l i la++   l   +++        +g  + +l+  +a++    +++ + g+++++r +f+ l+ + ++++ ++++   s+    + l++ a+ l+ 
  EHU01308.1  37 WLGISLAFC--GLILVAGPqdgrialNQGEAATLLS-TLAIAGEIILISRFAGQVDVRRVTFIQLTVASLCAFCFMIPNGESVPAlsTPLLVSAVGLG- 131
                 333333333..3333333344667855555555555.556666667888889**************************99887556555555566666. PP

     DUF2070 109 alvfalrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifalavylfivvvdrplkrn 182
                 a+++ +++ + +a  + s+++a+++++  p+ a ++  l        +l ++ ++ +++++  ++v + ++kr+
  EHU01308.1 132 AASALIQVTMNWAQRSVSPTRATVIYAGEPVWAGVVGRLA-----GERLPAAAILGGILIVCGVIVSELRWKRS 200
                 77888899999**************************999.....34555555555555555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1790.23
//
Query:       EHU01309.1  [L=169]
Description: TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-35  121.3   0.1    3.8e-35  120.9   0.1    1.1  1  TetR_C_3  YcdC-like protein, C-terminal region
    7.4e-14   51.3   0.0    1.3e-13   50.5   0.0    1.4  1  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_3  YcdC-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.1   4.3e-39   3.8e-35       1      97 [.      69     165 ..      69     168 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 4.3e-39
                 HHHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSS-S--HHHHHHHH CS
    TetR_C_3   1 LesiletwlealkeleeeddPaealaayiraKleisrdkPeasrlfanEilqGapllkeelkeelkelvkekaaviqaWieegklakvdpkhLlfsi 97 
                 L++il++wl++l++l+ e++P+ a+++yir Kle+srd+P+as+lf++E+lqGapllk el+++lk+l+++k+a+i++Wi+eg+la + p+hL+f++
  EHU01309.1  69 LKEILDVWLAPLRALTYEQEPLRAVRQYIRLKLEVSRDYPQASKLFCLEMLQGAPLLKGELAGDLKTLMDDKTAIIERWIAEGRLAAIAPQHLIFML 165
                 789********************************************************************************************97 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.4e-17   1.3e-13       1      47 []      22      68 ..      22      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.4e-17
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il aA+ +f++ G+++t ++++A++AGvsk  l +y+psKe+L+ a+
  EHU01309.1 22 ILQAALTCFSQFGIHGTRLEKVAEQAGVSKTNLLYYYPSKEALYVAV 68
                9******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1433.73
//
Query:       EHU01310.1  [L=430]
Description: putative integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-22   77.9   0.0    1.1e-21   76.6   0.0    1.8  1  Arm-DNA-bind_2   Arm DNA-binding domain
    1.6e-20   73.6   0.0    3.3e-20   72.6   0.0    1.4  1  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.33   11.2   0.0    1.8  2  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
       0.18   12.2   0.1       0.99    9.8   0.0    2.2  3  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_2  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   2.3e-25   1.1e-21       1      65 []       7      70 ..       7      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.3e-25
  Arm-DNA-bind_2  1 pggVeirsggklridFrykGkrcreslglpdtpanrKkaerllaeIeeeIalGtFdYakyFPqSk 65
                    p+gVe + gg+lri+F +kG+r+re+lg+pdt++nrK a++l+a+++ +I+ G FdYa++FP+S+
      EHU01310.1  7 PTGVENH-GGSLRIWFLFKGQRIRENLGVPDTAKNRKVAGELRASVCFAIKMGSFDYAAQFPESS 70
                    68*****.*******************************************************95 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   7.3e-24   3.3e-20       4     166 ..     204     396 ..     202     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 7.3e-24
                      HHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE..........EEECSSSSEEEEECTHHHHHHHHHHHHHH CS
  Phage_integrase   4 tedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvh..........eregKgskeravplseealellkellska 87 
                       +de +r++aa+++    + ++l  +++ tG+R +El++L ++d+dl+ g+++v             ++  +++r ++l e al++l+++ + +
       EHU01310.1 204 NKDEFSRFIAACHN---RQARNLWTVAVYTGVRHGELVALAWEDVDLKAGTLMVRrnltslgeftLPKTDAGTDRLIHLLEPALNALRDQAELT 294
                      68999*********...89999********************************7777777666544455566699999999999999998888 PP

                      ......CHCCTTTS................BSSBET.......TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHH CS
  Phage_integrase  88 ......leeaekse................llfask.......rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvq 152
                            l      +                +lf  +       +g++    ++++++ +a ++agi    +  + Rh++a ++l ag+++ +++
       EHU01310.1 295 rmgkqyL------KeiklreygrtsthpctFLFTPQltrqgisNGHHYAVGALNTMWASAIKRAGIR-YRNAYQSRHTYACWMLSAGANPTFIA 381
                      5555552......133444466667777777777779999999************************.999*********************** PP

                      HHHT-SSCCHH.HHH CS
  Phage_integrase 153 kllGHssistt.qiY 166
                      + +GH+s +++ ++Y
       EHU01310.1 382 SQMGHASAQMVyNVY 396
                      ***********9999 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.4e-05      0.33       3      37 ..      85     118 ..      83     132 .. 0.86
   2 ?   -3.1   0.0       2.3     1e+04      36      43 ..     300     307 ..     297     309 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.4e-05
                      HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHT CS
  Phage_int_SAM_3   3 sefleeWleeykprvkesTyatyksiiknhIlPyF 37 
                       +++++Wl+ +k  ++ + +++yks++kn +lP  
       EHU01310.1  85 ADLADKWLDLKKMEISANALHRYKSVVKN-MLPRV 118
                      799*************************9.99976 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
                      HTTSSBGG CS
  Phage_int_SAM_3  36 yFgniklk 43 
                      y+++ikl 
       EHU01310.1 300 YLKEIKLR 307
                      55555554 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   5.3e+03       7      29 ..      89     111 ..      71     115 .. 0.53
   2 ?    9.8   0.0   0.00022      0.99      67      95 ..     160     188 ..     148     196 .. 0.89
   3 ?   -3.4   0.0       2.8   1.3e+04      70      90 ..     335     355 ..     327     361 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                      HHHTHHHHTTS-HHHHHHHHHHH CS
  Phage_int_SAM_5   7 keyiekkkkkgskgtlrnykstl 29 
                      +++++ kk + s + l++yks++
       EHU01310.1  89 DKWLDLKKMEISANALHRYKSVV 111
                      33344334334444444444444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
                      HHHHHHHHHHHHHHHHHHHTTS--S-HHH CS
  Phage_int_SAM_5  67 ntiskyfkklkavlnkAikegilkknpyp 95 
                       t++ y+ +l  +++ A ++g+l+ np++
       EHU01310.1 160 PTVNYYMGTLAGMFRFATENGYLETNPFA 188
                      599************************65 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.8
                      HHHHHHHHHHHHHHHHTTS-- CS
  Phage_int_SAM_5  70 skyfkklkavlnkAikegilk 90 
                      +  +  l++++  Aik+  ++
       EHU01310.1 335 HYAVGALNTMWASAIKRAGIR 355
                      556677899999999985554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.32
# Mc/sec: 3970.38
//
Query:       EHU01311.1  [L=120]
Description: DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-17   60.8   0.0    1.2e-16   60.2   0.0    1.3  1  LexA_DNA_bind  LexA DNA binding domain


Domain annotation for each model (and alignments):
>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   6.6e-21   1.2e-16       4      65 .]       1      62 [.       1      62 [. 0.97

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 6.6e-21
                   --HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CCG CS
  LexA_DNA_bind  4 LTerQrevldlikasieetgypPsireiaralglkSpsaveehLkaLerKGyierdpgkpRa 65
                   +T+ Q++ +d+i+ +i e+g  P+i ei + +g kSp+++ +h +aLerKGy++++  + R+
     EHU01311.1  1 MTDTQQRTFDFIRGFIRENGLSPTIVEITEGMGWKSPNSAVNHINALERKGYLKIKRATGRG 62
                   5999***************************************************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 921.21
//
Query:       EHU01312.1  [L=91]
Description: Eaa1 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.077   13.3   0.6       0.21   11.9   0.5    1.8  2  NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosi


Domain annotation for each model (and alignments):
>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   1.2e-05      0.21      24      43 ..      15      34 ..       7      58 .. 0.86
   2 ?   -0.8   0.0       0.1   1.8e+03      12      20 ..      59      67 ..      46      82 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.2e-05
  NPCBM_assoc 24 vslslslPeGWtvvevspas 43
                   l++s P+GW+ v v+p++
   EHU01312.1 15 TALQVSIPDGWKLVPVEPTE 34
                 568999*********99997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.1
  NPCBM_assoc 12 tvtndgtaa 20
                 ++ +++++a
   EHU01312.1 59 EAMSGCQQA 67
                 344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 808.88
//
Query:       EHU01313.1  [L=114]
Description: hypothetical protein CKS_4063 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 1102.72
//
Query:       EHU01314.1  [L=132]
Description: hypothetical protein CKS_4064 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1494  (0.0833287); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1004.65
//
Query:       EHU01315.1  [L=73]
Description: hypothetical protein CKS_4065 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 659.24
//
Query:       EHU01316.1  [L=41]
Description: hypothetical protein CKS_4066 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 387.72
//
Query:       EHU01317.1  [L=193]
Description: hypothetical protein CKS_4067 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-15   56.9   0.0    3.1e-15   56.0   0.0    1.4  2  KilA-N    KilA-N domain
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.27   11.3   0.0    1.5  1  BssS      BssS protein family


Domain annotation for each model (and alignments):
>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   3.5e-19   3.1e-15      13     111 ..      16     116 ..       8     117 .. 0.82
   2 ?   -3.0   0.0      0.73   6.6e+03      19      33 ..     152     166 ..     135     171 .. 0.49

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.5e-19
      KilA-N  13 vkdgyinatkllkaa.aedtkriddWlrnkstkelleeleedynisekkks.....ektisenrkakpgrlqGtYvhpdlalavasWispefalkvskl 105
                 ++ g +n++ l+ka  + ++k++++Wlr+k++kel++ele++  +  +  +         +   +a +g   GtY+h+++a+ +a W+  +f+l v++ 
  EHU01317.1  16 DEFGRYNLNTLHKASgEGENKEPNRWLRTKQAKELIAELESKLLKMFQ--TpnmaaA--QKVVDTAIGGASPGTYAHELIAVSYAGWVRADFQLDVNQA 110
                 56799**********9999*********************99887522..2334332..33366777888889************************99 PP

      KilA-N 106 ideikr 111
                 + ++k+
  EHU01317.1 111 FIDFKS 116
                 987765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.73
      KilA-N  19 natkllkaaaedtkr 33 
                  +  +++ +++++k+
  EHU01317.1 152 ELLTICSLIMNGRKK 166
                 333455555444444 PP

>> BssS  BssS protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.27      37      58 ..      37      58 ..      21      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
        BssS 37 grtlvLttdvarqLisiLeagi 58
                ++  +L t++a++Li +Le  +
  EHU01317.1 37 EPNRWLRTKQAKELIAELESKL 58
                4566**************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1611.83
//
Query:       EHU01318.1  [L=143]
Description: putative phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1215.58
//
Query:       EHU01319.1  [L=93]
Description: hypothetical protein CKS_4069 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 769.53
//
Query:       EHU01320.1  [L=128]
Description: hypothetical protein CKS_4070 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 951.03
//
Query:       EHU01321.1  [L=114]
Description: hypothetical protein CKS_4071 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.077   12.5   0.0        0.1   12.1   0.0    1.2  1  UNC119_bdg  UNC119-binding protein C5orf30 homologue


Domain annotation for each model (and alignments):
>> UNC119_bdg  UNC119-binding protein C5orf30 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.7e-06       0.1      49      89 ..       4      44 ..       2      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-06
  UNC119_bdg 49 ilhmdsnylvgfttGeellklaqkwsegeeekaealesvvs 89
                il  + nylv+ t    l+k  +k+++ + +++e+++ +++
  EHU01321.1  4 ILENNRNYLVAATINSMLMKNGHKFCTVKLSNGESVRLQIN 44
                89999*****************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 945.71
//
Query:       EHU01322.1  [L=61]
Description: hypothetical protein CKS_4072 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.6   0.3       0.46   11.0   0.1    1.8  3  RlmM_FDX  RlmM ferredoxin-like domain


Domain annotation for each model (and alignments):
>> RlmM_FDX  RlmM ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.15   2.6e+03      50      61 ..       7      18 ..       2      29 .. 0.57
   2 ?   -2.4   0.0      0.38   6.9e+03      42      57 ..      22      37 ..      20      42 .. 0.57
   3 ?   11.0   0.1   2.5e-05      0.46       3      17 ..      46      60 ..      44      61 .] 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.15
    RlmM_FDX 50 eaaeellkkldl 61
                e+a+++ ++l++
  EHU01322.1  7 EEAKNISEQLNV 18
                566666666664 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.38
    RlmM_FDX 42 vlfeleeaeaaeellk 57
                v+++++ +++ + +l 
  EHU01322.1 22 VIYSSQLSNHEKDVLT 37
                5666655555555555 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 2.5e-05
    RlmM_FDX  3 slllycRaGFEkdcA 17
                +l  +c+aGFEkd A
  EHU01322.1 46 ELYHFCKAGFEKDEA 60
                56789********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 485.67
//
Query:       EHU01323.1  [L=79]
Description: hypothetical protein CKS_4073 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   14.1   0.2      0.042   13.7   0.1    1.4  1  DUF2153   Uncharacterized protein conserved in archaea (DUF21


Domain annotation for each model (and alignments):
>> DUF2153  Uncharacterized protein conserved in archaea (DUF2153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.3e-06     0.042      63      95 ..      14      46 ..       7      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-06
     DUF2153 63 premLldvketlreilekllelDieHtsevrel 95
                 +e+L d+k+   +il+ +  +Di H s++ ++
  EHU01323.1 14 SKEILDDLKRFHNRILQAITAIDIIHNSDCDHI 46
                69**************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.31
# Mc/sec: 753.71
//
Query:       EHU01324.1  [L=65]
Description: hypothetical protein CKS_4074 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 579.28
//
Query:       EHU01325.1  [L=67]
Description: hypothetical protein CKS_4075 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 529.26
//
Query:       EHU01326.1  [L=113]
Description: hypothetical protein CKS_4076 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1004.53
//
Query:       EHU01327.1  [L=281]
Description: hypothetical protein CKS_4077 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2443.22
//
Query:       EHU01328.1  [L=501]
Description: type III restriction enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-12   47.7   0.0    4.4e-12   46.3   0.0    1.7  1  ResIII         Type III restriction enzyme, res subunit
    2.2e-07   31.2   0.0    5.2e-07   30.0   0.0    1.6  1  Helicase_C     Helicase conserved C-terminal domain
    0.00011   22.0   0.0    0.00082   19.2   0.0    2.1  1  DEAD           DEAD/DEAH box helicase
     0.0017   18.1   0.0     0.0028   17.4   0.0    1.3  1  AAA_30         AAA domain
     0.0092   15.7   0.4      0.079   12.6   0.1    2.4  3  MmcB-like      DNA repair protein MmcB-like
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.089   12.5   0.0    1.9  2  IstB_IS21      IstB-like ATP binding protein
      0.032   14.5   0.0       0.14   12.5   0.0    1.9  1  AAA_22         AAA domain
      0.058   13.2   0.0       0.19   11.6   0.0    1.8  2  Helicase_RecD  Helicase
      0.074   13.1   1.0       0.15   12.1   1.0    1.4  1  DZR            Double zinc ribbon
      0.088   12.6   0.0       0.37   10.6   0.0    2.0  2  DUF5596        Domain of unknown function (DUF5596)
        1.2    9.1   4.0          2    8.4   4.0    1.3  1  zf-HIT         HIT zinc finger


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   2.7e-15   4.4e-12       3     170 ..       5     149 ..       3     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2.7e-15
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 +++  Q +a++ l++ +  ++ + +l+ ++ G GKT+++a l++r l +gk  +++f++p ++l+ qt  +f ++  ++++ i+ ++++  +k+   ++
  EHU01328.1   5 KPKLKQVTALQMLRQDW--NDYRTFLLYAPVGYGKTFISAFLADRALASGK--RTMFVAPYLTLVHQTAARFVQYGIPEDQ-ISYVWRD--YKP---HD 93 
                 56677999999999888..7999*************************988..9***********************9963.4444444..444...45 PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS-S CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATpe 170
                  ++ i +++ ++l +++           ++++d++i+DEaH  ++  +  e+++  ++  ++gl++Tp 
  EHU01328.1  94 PDRLIQIASADTLIRRE----------FPENIDLLIVDEAHMKRR--ALLEVIRD-SDIRVIGLSGTPF 149
                 78888888888888888..........9*************9998..45555454.5699*******96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   3.2e-10   5.2e-07      12     109 ..     227     323 ..     219     325 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.2e-10
                 HTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                 ++ e++ +++f+ +++++    ++++++   g+++ ++   +p++er+ i+++f +g ++v++   v+  G d  +v+++i   + ++  + iq  GR 
  EHU01328.1 227 QHGENRPTVCFCVNQSHA---GFITTEFnraGVSAEIIIDATPSDERRMIIHRFEQGATKVIVNVGVLTAGFDS-DVRCIIYARPTKSEMRWIQCLGRG 321
                 556778899999999988...45543444459*****************************************9.8**********************9 PP

                 SS CS
  Helicase_C 108 gR 109
                  R
  EHU01328.1 322 LR 323
                 88 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     5e-07   0.00082      15     132 ..      25     125 ..       9     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5e-07
                 CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddlls 113
                 + +l+ a++G+GKT + ++ + +++      +g+++++v+P   L++qt+ ++ +++ + d +++ +   + + ++ ++l     i ++     d l++
  EHU01328.1  25 RTFLLYAPVGYGKTFISAFLADRAL-----ASGKRTMFVAPYLTLVHQTAARFVQYGIPED-QISYVWR-DYKPHDPDRL-----IQIASA---DTLIR 108
                 678999*********9777777666.....67999*********************99755.3332222.2222333333.....223333...33444 PP

                 CTSSHCTTEEEEEEETHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEadr 132
                 ++    +++ +l++DEa++
  EHU01328.1 109 REF--PENIDLLIVDEAHM 125
                 555..67778888888875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.7e-06    0.0028      19     120 ..      25     142 ..       7     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.7e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae...elgieastiakllkrlk.................grarlepg.tllivDE 96 
                 r+ +l +p G GKt++ + l++ + a+g+r + +Ap  +  ++ a+   + gi+ + i  +++ +k                 +  ++ ++ +llivDE
  EHU01328.1  25 RTFLLYAPVGYGKTFISAFLADRALASGKRTMFVAPYLTLVHQTAArfvQYGIPEDQISYVWRDYKphdpdrliqiasadtliR-REFPENiDLLIVDE 122
                 5778999***************9999**********9988888774445899*********99999**************9963.5777888******* PP

      AAA_30  97 agmvdtkqlaallkaaekagakvi 120
                 a m      +all+ +++++++vi
  EHU01328.1 123 AHMK----RRALLEVIRDSDIRVI 142
                 *995....5677777777777776 PP

>> MmcB-like  DNA repair protein MmcB-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.3   3.8e+03      71      79 ..      19      27 ..      15      31 .. 0.85
   2 !   12.6   0.1   4.8e-05     0.079      30     114 ..      41     127 ..      31     138 .. 0.84
   3 ?   -0.4   0.0       0.5   8.2e+02     100     140 ..     244     284 ..     237     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.3
   MmcB-like 71 rkWpeyrah 79
                + W++yr++
  EHU01328.1 19 QDWNDYRTF 27
                67*****97 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.8e-05
   MmcB-like  30 laalpelsLasGrraDlva..lskkgeiwiieikssveDfrtDrkWpeyrah.cDrlf.faveedvpleilPedvGlivaDaygaellr 114
                  a l++ +LasG+r   va  l+  ++     ++ ++ + ++   W++y+ h  Drl   a  + +    +Pe++ l+++D+  a++ r
  EHU01328.1  41 SAFLADRALASGKRTMFVApyLTLVHQTAARFVQYGIPEDQISYVWRDYKPHdPDRLIqIASADTLIRREFPENIDLLIVDE--AHMKR 127
                 56788999******99998777888999999999*****************956**98367778888999***********7..55555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.5
   MmcB-like 100 vGlivaDaygaellreapehklaaatrkalllrfaraaasr 140
                 +G+i ++   a +  e      ++  r+ +++rf + a + 
  EHU01328.1 244 AGFITTEFNRAGVSAEIIIDATPSDERRMIIHRFEQGATKV 284
                 56666655555555555555568999********9988765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.5e-05     0.089      37      82 ..      15      59 ..       3      72 .. 0.79
   2 ?   -2.5   0.0       2.2   3.5e+03     108     118 ..     114     124 ..      99     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
   IstB_IS21 37 eLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvr 82
                ++   ++ +    ++l  p G GK+++++ l+ +a ++g++++fv 
  EHU01328.1 15 QMLRQDWND-YRTFLLYAPVGYGKTFISAFLADRALASGKRTMFVA 59
                445667755.457999****************************85 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
   IstB_IS21 108 kvdllilDdlg 118
                 ++dlli+D+  
  EHU01328.1 114 NIDLLIVDEAH 124
                 5799***9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.3e-05      0.14       8     114 ..      27     136 ..      22     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.3e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsstsskdllrellralglelka......erlsseell.ealeqalrarav...i 92 
                  ++++++G GKT+  + l++++ +       +++++    + tl ++t     +r +   + +++ +      ++++ ++l+  a ++ l +r     i
  EHU01328.1  27 FLLYAPVGYGKTFISAFLADRALAS------GKRTMfvapYLTLVHQT----AARFVQYGIPEDQISyvwrdyKPHDPDRLIqIASADTLIRREFpenI 115
                 5799*****************9654......55555113334444433....33334444444444477778889999999954445555555548*** PP

      AAA_22  93 elliiDEaqhlrseealeeLrs 114
                  lli+DEa+   + ++le +r+
  EHU01328.1 116 DLLIVDEAHMK-RRALLEVIRD 136
                 ********988.7777777754 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.19       2     111 ..      29     135 ..      28     148 .. 0.73
   2 ?   -1.7   0.0       1.4   2.3e+03       9      32 ..     213     236 ..     212     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklk..eqadllv 95 
                    l A  G GK+ + + ++ +++a+gk +++v+       +t  +f++ g+ + ++++  ++ k++       ++ i+  + d+l++++  e+ dll+
     EHU01328.1  29 LYAPVGYGKTFISAFLADRALASGKRTMFVAPYLTLVHQTAARFVQYGIPEDQISYVWRDYKPH-----DPDRLIQIASADTLIRREfpENIDLLI 119
                    678889*****************99777765555556677788888888777766655444444.....56888999999999887522566**** PP

  Helicase_RecD  96 vDEAAaiplpllkkll 111
                    vDEA +   +ll+ + 
     EHU01328.1 120 VDEAHMKRRALLEVIR 135
                    ****887777776655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
  Helicase_RecD   9 GKSaalGlalaaliaegksnilvt 32 
                    G Sa++G ++++++++g+++  v+
     EHU01328.1 213 GDSALVGDIVSNWLQHGENRPTVC 236
                    7899********999999665544 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   9.3e-05      0.15      27      49 .]     376     398 ..     360     402 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
         DZR  27 aedrCpsCgekvdpearfCpeCG 49 
                 +++ C++C+ + +++  +Cp+CG
  EHU01328.1 376 KPKECSQCHFMKPAGVYVCPKCG 398
                 37778888888888888888887 PP

>> DUF5596  Domain of unknown function (DUF5596)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023      0.37      10      46 ..      45      81 ..      40      84 .. 0.90
   2 ?   -2.2   0.0       2.4   3.9e+03      24      49 ..     238     263 ..     227     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
     DUF5596 10 lpeklgedeelfllyallaaapdvleayrkrGIseei 46
                 +++l+ ++++++++ +l +++ + +++ + GI+e+ 
  EHU01328.1 45 ADRALASGKRTMFVAPYLTLVHQTAARFVQYGIPEDQ 81
                56789999***************************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
     DUF5596  24 yallaaapdvleayrkrGIseeifwa 49 
                 ++  + a  +  ++ + G+s ei+++
  EHU01328.1 238 CVNQSHAGFITTEFNRAGVSAEIIID 263
                 555555556667788999***99997 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.0    0.0012         2       3      20 ..     378     398 ..     376     400 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
                 -B-TTT-S...B-SEE-TTT- CS
      zf-HIT   3 klCgvCgf...pakYkCpkCn 20 
                 k C+ C+f    + Y CpkC+
  EHU01328.1 378 KECSQCHFmkpAGVYVCPKCG 398
                 67********999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3294.42
//
Query:       EHU01329.1  [L=327]
Description: putative phage DNA primase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-11   43.8   8.7    4.1e-11   43.0   8.7    1.4  1  Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
    4.4e-11   43.0   0.0      1e-10   41.8   0.0    1.7  1  Toprim_3        Toprim domain


Domain annotation for each model (and alignments):
>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   8.7   4.6e-15   4.1e-11       5      38 .]      32      63 ..      28      63 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 4.6e-15
                    --TTTT-TTTEEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon  5 pCPvCGGrDrFrfddkdgrGtwfCrqCggggdgl 38
                    +CPvC ++++Fr+ddk+grGtw+C +C g+gdg+
      EHU01329.1 32 ECPVCNRKGKFRIDDKEGRGTWIC-SC-GSGDGW 63
                    8***********************.**.****97 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.2e-14     1e-10       2      91 ..     221     312 ..     220     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.2e-14
    Toprim_3   2 liivEGietaLsileartgaaviAllsaanlkaiawpergkrvviaaDnDaand..Greaaeklaer.leaagieavllepaegeDwndvlqk 91 
                 l i+EGietaLs  ++  g+ ++ +++a+ ++++  p ++++++i+ D D + +    +a+e + ++ l+++++e v++   +g+D+nd+++ 
  EHU01329.1 221 LGIAEGIETALSC-KQLYGVNTWSVINANFMEKFLAPAGVTHLIIFTDMDRHTAtgHAKAFECAHKNlLAKNDVEKVTVRWCDGGDFNDLIMN 312
                 789**********.99**********************************998896566666665551566******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2349.92
//
Query:       EHU01330.1  [L=260]
Description: putative chaparone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-41  138.3   0.2    4.8e-22   78.1   0.0    2.6  2  Antiterm       Antitermination protein
      2e-05   24.8  11.3     0.0081   16.5   8.0    3.0  2  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
        2.8    8.0   9.5         23    5.0   0.1    3.5  3  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi
        4.1    7.5  11.1         66    3.7   0.3    3.3  3  DUF3716        Protein of unknown function (DUF3716)


Domain annotation for each model (and alignments):
>> Antiterm  Antitermination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   2.4e-19   1.1e-15       1      87 []      23     109 ..      23     109 .. 0.99
   2 !   78.1   0.0   1.1e-25   4.8e-22       3      87 .]     168     252 ..     166     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.4e-19
                 XXTTSBXTTTTSXEEEXHHHHHHHXTSXXETTTXXBXSTTHHHHHHHHHCCCCCHGHHHHHTSHHHHCHHHHHHHHHHHHHHHHHHH CS
    Antiterm   1 gtasdalrctdvgaalglaqskaqlGvpvflakrGysrldsteaiealtklapaltektlrklwerkvkpflelLvtkafkeesraa 87 
                 +t sd+l++td + a+g  qska +G++++lak   s+ ++ +++e+l ++a+++++k lrk+++ k   +l +L + af e++r+a
  EHU01330.1  23 ATGSDSLTGTDLMGAVGFCQSKAPFGISAVLAKSTGSNEETYRTVEQLLQYANRTAPKLLRKAAGAKLGRCLMVLSKLAFDEYARSA 109
                 689**********************************************************************************98 PP

  == domain 2  score: 78.1 bits;  conditional E-value: 1.1e-25
                 TTSBXTTTTSXEEEXHHHHHHHXTSXXE.....TTTXXBXSTTHHHHHHHHHCCCCCHGHHHHHTSHHHHCHHHHHHHHHHHHHHHHHHH CS
    Antiterm   3 asdalrctdvgaalglaqskaqlGvpvf.....lakrGysrldsteaiealtklapaltektlrklwerkvkpflelLvtkafkeesraa 87 
                 + +++rc+++g++ +l+ sk q Gvpv      ++ rGy rl+s++a++ +  l+p+lt+++    w+r++kpf+e+Lv+k+ +ee++a+
  EHU01330.1 168 VYARCRCNGTGRVRDLEASKRQ-GVPVDkecerCSSRGYRRLPSSMAYRSVALLVPDLTQSS----WSRNWKPFFEMLVSKCEIEEAHAD 252
                 6789******************.***************************************....*********************997 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   8.0   1.8e-06    0.0081      13      67 .]     111     178 ..     103     178 .. 0.71
   2 !   14.1   6.7     1e-05     0.045       1      52 [.     159     205 ..     159     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.8e-06
  DnaJ_CXXCXGXG  13 kkktCktCkGsG.vvree..............qktlgp.fvq.qsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    ++  C++C+G+G + +++              ++++ p +v   ++++C++C+G+G+v+    +C+ C+G+g
     EHU01330.1 111 STAPCQHCNGTGfNHVMRsvvkypgyisavdgEEKIPPrIVDeMVREKCTRCDGKGRVY---ARCR-CNGTG 178
                    3567********76544468999****99987333555544404567**********99...4674.88875 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1e-05
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGk 52 
                    C++C+G+g       +C +C+G+G+vr+ + +  +    + ++C++C+ +G 
     EHU01330.1 159 CTRCDGKGR---VYARC-RCNGTGRVRDLEASKRQ-GVPVDKECERCSSRGY 205
                    ********5...45668.6*****76655543222.224689******9996 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0052        23      12      20 ..     114     122 ..     109     130 .. 0.86
   2 ?    3.5   0.6     0.016        72      10      22 ..     156     168 ..     149     172 .. 0.78
   3 ?    3.1   0.8     0.021        96      15      40 ..     173     204 ..     169     209 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0052
                 E-TTTTTTS CS
   Anti-TRAP  12 kCdaCngsG 20 
                 +C++Cng+G
  EHU01330.1 114 PCQHCNGTG 122
                 899****99 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.016
                 EEE-TTTTTTSEE CS
   Anti-TRAP  10 EtkCdaCngsGki 22 
                  +kC  C+g G++
  EHU01330.1 156 REKCTRCDGKGRV 168
                 5789999999986 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.021
                 TTTTTSEETTE............E-TTTTTSS CS
   Anti-TRAP  15 aCngsGkiepe..eprasl....eCPkCsGkg 40 
                  Cng+G++      +r ++    eC +Cs +g
  EHU01330.1 173 RCNGTGRVRDLeaSKRQGVpvdkECERCSSRG 204
                 6*****98765334455542233577777655 PP

>> DUF3716  Protein of unknown function (DUF3716)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.063   2.8e+02      12      22 ..     112     121 ..     105     133 .. 0.75
   2 ?    1.5   8.0      0.07   3.1e+02      12      32 ..     156     185 ..     151     200 .. 0.65
   3 ?    3.7   0.3     0.015        66       7      20 ..     189     202 ..     184     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.063
     DUF3716  12 pepCtrCrrgk 22 
                 + pC++C+ g 
  EHU01330.1 112 TAPCQHCN-GT 121
                 568****4.44 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.07
     DUF3716  12 pepCtrCrrgkg.pFeeCvvv.........e 32 
                 +e+CtrC  gkg  ++ C+           +
  EHU01330.1 156 REKCTRCD-GKGrVYARCRCNgtgrvrdleA 185
                 678****6.55559****9876665544433 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.015
     DUF3716   7 tGeeapepCtrCrr 20 
                  G   +++C+rC++
  EHU01330.1 189 QGVPVDKECERCSS 202
                 68889999****53 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2008.93
//
Query:       EHU01331.1  [L=142]
Description: hypothetical protein CKS_4081 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-15   57.7   4.4    2.6e-15   56.6   4.4    1.6  1  TerB      Tellurite resistance protein TerB
    1.3e-05   24.8   2.0      0.059   12.9   0.1    2.1  2  DUF533    Protein of unknown function (DUF533)
     0.0024   18.1   6.7      0.029   14.6   0.0    2.9  3  zf-HC2    Putative zinc-finger


Domain annotation for each model (and alignments):
>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   4.4   4.3e-19   2.6e-15      19     135 ..      16     137 ..       3     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 4.3e-19
        TerB  19 tdaakeafalalaallaevakaDgqvsesErqafrellksrfglspe..eakallelfeeaeee..avdleqftralkrkls..peqrraliealweiA 111
                 ++++k+++a a++   + va+aDg+  +sE+++++++l+++ +l ++  e++a+  +     +   +++  ++ r++ +  +  p ++++++++ ++iA
  EHU01331.1  16 KKFEKRDLAQAVVNAAYLVAYADGECEPSEKAKIEQVLRNQPSLAAFtsEINAISSTIVGQLDTnfKIGRRAALREIEDV-KhdPREAEDVLDVAVAIA 113
                 34445599********************************999998733566666666666666899999*******995.448*************** PP

        TerB 112 lADGeldeaEdavlrrvaelLgls 135
                  ADGe++++E++vl+++a+ Lgl 
  EHU01331.1 114 EADGEVEPEERKVLEEIANVLGLR 137
                 **********************85 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   9.9e-06     0.059      66     103 ..      19      56 ..       5      72 .. 0.80
   2 !   12.0   0.4   1.9e-05      0.11      66     101 ..      97     132 ..      63     141 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.9e-06
      DUF533  66 eeeekaelllrAmiaAAkADGhideeErqrIlqeleel 103
                 e+ + a+++++A    A ADG+ + +E+++I+q l+++
  EHU01331.1  19 EKRDLAQAVVNAAYLVAYADGECEPSEKAKIEQVLRNQ 56 
                 67778899999999999***************998775 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.9e-05
      DUF533  66 eeeekaelllrAmiaAAkADGhideeErqrIlqele 101
                 ++ ++ae +l   +a A+ADG+++ eEr+ +++  +
  EHU01331.1  97 HDPREAEDVLDVAVAIAEADGEVEPEERKVLEEIAN 132
                 5667788899999***************99887655 PP

>> zf-HC2  Putative zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.9e-06     0.029       7      25 ..      32      50 ..      30      51 .. 0.91
   2 !    6.0   0.9    0.0024        14      12      26 ..     115     129 ..     113     129 .. 0.91
   3 ?   -2.0   0.1      0.77   4.6e+03      23      28 ..     137     142 .]     136     142 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-06
                HHHHHHCCT-SCCCHCCCH CS
      zf-HC2  7 lLsaYlDGeLspeerarve 25
                +L aY+DGe+ p e+a +e
  EHU01331.1 32 YLVAYADGECEPSEKAKIE 50
                899*************998 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0024
                 HCCT-SCCCHCCCHH CS
      zf-HC2  12 lDGeLspeerarvea 26 
                 +DGe  peer  +e+
  EHU01331.1 115 ADGEVEPEERKVLEE 129
                 7***********997 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.77
                 CCHHHH CS
      zf-HC2  23 rveaHL 28 
                 r+e HL
  EHU01331.1 137 RLENHL 142
                 89***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1076.69
//
Query:       EHU01332.1  [L=38]
Description: hypothetical protein CKS_4082 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-15   55.2   3.0    5.1e-15   55.2   3.0    1.0  1  DUF3927   Protein of unknown function (DUF3927)


Domain annotation for each model (and alignments):
>> DUF3927  Protein of unknown function (DUF3927)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   3.0   2.8e-19   5.1e-15      17      48 ..       3      34 ..       1      38 [] 0.89

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.8e-19
     DUF3927 17 vlvdfsSrIlSVLsDGvLVAvvVvlvfPlLKk 48
                v +df+S+++SVL+DGvLVA+vVv+v+Pl  k
  EHU01332.1  3 VAIDFTSKLMSVLADGVLVAGVVVIVWPLVMK 34
                668*************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 317.87
//
Query:       EHU01333.1  [L=116]
Description: hypothetical protein CKS_4083 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   12.9   0.0      0.097   12.8   0.0    1.1  1  DUF2371   Uncharacterised conserved protein (DUF2371)


Domain annotation for each model (and alignments):
>> DUF2371  Uncharacterised conserved protein (DUF2371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.4e-06     0.097      36      96 ..      21      89 ..       4     108 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.4e-06
     DUF2371 36 Llsvsglvll..lGllvllvGiamavlgywpkk......aklaseekssssstaessseklgllarfle 96
                L s +g+v l  + ++  + G+++a++gy  k+      ++  +e+ +s+++  e ++ ++ +++++l+
  EHU01333.1 21 LSSLAGVVTLdrVYMITAVAGLVIAIFGYLDKRrteklkRQEIEESMRSERERLELDRVRAQAVLDYLQ 89
                67777777763355677899**********999544333222222233333333444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 966.61
//
Query:       EHU01334.1  [L=165]
Description: phage lysozyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-21   75.2   0.0    6.2e-21   74.9   0.0    1.1  1  Phage_lysozyme  Phage lysozyme


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   3.4e-25   6.2e-21       1     109 []      36     154 ..      36     154 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 3.4e-25
                     CEEEETT...BCSSSCCTTHH-EHHHHHHHHHHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCHHHHHHHGGG CS
  Phage_lysozyme   1 ywtigiG...ekgkdvsphkritkeeaagryekdlktaerkikqyikvkdfepnqqdalvslafnvGkgGkrkastllralnagdwkkacsairk 92 
                     +wti++G   ++gk v +++r+t++++ +  + + ++a +++++++ v+ +ep++ +++++++ n+G+ Gk+ +st++r+ln gd+k+ac +i++
      EHU01334.1  36 VWTICGGvtrVNGKPVVKGMRLTADQCRAIDRAEQAKALAWVDKNVHVPLTEPQKVGIASFCPWNIGP-GKCLPSTFYRKLNSGDRKGACAEIKR 129
                     7******************************************************************9.8************************* PP

                     SSEE.T.......CCCHHHHHHHHH CS
  Phage_lysozyme  93 slka.G.......kelnglknRrek 109
                     ++ + G       ++++g+++Rr++
      EHU01334.1 130 WIFDgGkdcrirsNGCYGQVIRRDQ 154
                     ****669999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1332.19
//
Query:       EHU01335.1  [L=123]
Description: hypothetical protein CKS_4085 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.066   12.6   0.1      0.072   12.4   0.1    1.1  1  Terpene_synth_C  Terpene synthase family, metal binding domai
      0.081   13.3   0.2        0.1   13.0   0.2    1.1  1  DUF3232          Protein of unknown function (DUF3232)
       0.18   12.9   3.4        0.4   11.7   0.3    2.2  2  Conotoxin        Conotoxin


Domain annotation for each model (and alignments):
>> Terpene_synth_C  Terpene synthase family, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.2e-05     0.072     194     235 ..      29      70 ..       4      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
  Terpene_synth_C 194 evtkeafewvasypklvkalstilRLlnDiasyereqkrgdv 235
                      + ++ a++ ++s + +++ +   +RL nDia++++ qk++  
       EHU01335.1  29 QQRDAAIQQTKSAEAVTNNVISAVRLFNDIAASTQSQKQQAN 70 
                      35558999999*********************9987877543 PP

>> DUF3232  Protein of unknown function (DUF3232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.7e-05       0.1      58     111 ..      25      79 ..       8      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHTT-T-HHHH CS
     DUF3232  58 leaeelkelveelDrsRrlahnslisslkiinrllvkeev.eelseagledRiei 111
                 l  e+ ++   +  +s   + n +is ++++n +  + +  ++  +a+ e+Ri +
  EHU01335.1  25 LRVEQQRDAAIQQTKSAEAVTNNVISAVRLFNDIAASTQSqKQQANADSENRIVV 79 
                 667899999999999******************98876651567789999**987 PP

>> Conotoxin  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   6.7e-05       0.4       6      44 ..       7      44 ..       4      57 .. 0.68
   2 ?    2.1   0.2     0.068   4.1e+02      11      34 ..      52      75 ..      48      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.7e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Conotoxin  6 vlivavLllttlvtadldgdqpadrkakrledrkseekk 44
                v+++a+Lllt +++  +++   +++  ++ ++ ks+e+ 
  EHU01335.1  7 VVLIAALLLT-AAHYRDSTLRVEQQRDAAIQQTKSAEAV 44
                8999999999.5666666666666555556666665554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.068
                XXXXXXXXXXXXXXXXXXXXXXXX CS
   Conotoxin 11 vLllttlvtadldgdqpadrkakr 34
                v l+  +++  ++++q+a+ ++++
  EHU01335.1 52 VRLFNDIAASTQSQKQQANADSEN 75
                555556667777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1662  (0.092699); expected 358.6 (0.02)
Passed bias filter:                      851  (0.047465); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 973.91
//
Query:       EHU01336.1  [L=85]
Description: hypothetical protein CKS_4087 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0037   17.0   3.0     0.0062   16.3   3.0    1.6  1  LapA_dom  Lipopolysaccharide assembly protein A domain
  ------ inclusion threshold ------
        3.5    8.2   6.1         30    5.2   6.1    2.0  1  YtxH      YtxH-like protein


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.0   6.9e-07    0.0062      18      44 ..       6      31 ..       1      69 [. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.9e-07
    LapA_dom 18 pLsllllvafgiGallgwllslwsylr 44
                 L+++ l+a++ G+ +gwl++l+ +++
  EHU01336.1  6 ALITWALIALVTGFAAGWLVGLF-RWK 31
                699*******************6.333 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.1    0.0034        30       1      64 [.      12      67 ..      12      78 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0034
        YtxH  1 llglliGaavGaaaglL...lAPksGketRkdlkekaddlkekakelleeakekakekaedlkekvk 64
                l++l++G a+G ++gl+    +P++ +     +++  +d+ ++++  ++e+k+k            +
  EHU01336.1 12 LIALVTGFAAGWLVGLFrwkNSPQKAEAESTAIRDGWHDVEQRFQAQIDELKSKL-----------D 67
                68999***********966668999999999999999999999966666665554...........3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 694.90
//
Query:       EHU01337.1  [L=57]
Description: hypothetical protein CKS_4088 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   14.2   0.6      0.036   14.0   0.6    1.0  1  EspB      Enterobacterial EspB protein


Domain annotation for each model (and alignments):
>> EspB  Enterobacterial EspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.6     2e-06     0.036      95     142 ..       9      55 ..       4      57 .] 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-06
        EspB  95 atsasaksVntasEvsvkAlvkasEsiadaagetvgklqqgiasvaaa 142
                  t ++a+ V ta+++ ++A+   + +++  ag+ v+++ +++as+a +
  EHU01337.1   9 TTATTAQPVTTATDK-TDAVLAKVKELLKVAGHDVDTVFDDVASLAKK 55 
                 466678888888875.79999999999999999999999999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 461.82
//
Query:       EHU01338.1  [L=61]
Description: hypothetical protein CKS_4089 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 517.59
//
Query:       EHU01339.1  [L=241]
Description: hypothetical protein CKS_4090 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-06   29.2   0.3    1.1e-06   29.2   0.3    1.7  2  Terminase_2      Terminase small subunit
     0.0094   16.0   0.1        6.4    6.9   0.0    2.9  3  HTH_29           Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.2   0.0        0.6   10.0   0.0    2.7  2  HTH_23           Homeodomain-like domain
      0.037   13.8   0.6      0.072   12.9   0.4    1.6  1  DFP              DNA / pantothenate metabolism flavoprotein
       0.11   12.0   0.0       0.15   11.5   0.0    1.3  1  Aromatic_hydrox  Homotrimeric ring hydroxylase


Domain annotation for each model (and alignments):
>> Terminase_2  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       1.1     4e+03      38      60 ..      40      62 ..      33      78 .. 0.55
   2 !   29.2   0.3     3e-10   1.1e-06       3      82 ..      94     173 ..      92     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
  Terminase_2 38 elLrkpkIkkaIreakaereert 60
                 + ++kp  ++  ++++a+ e r+
   EHU01339.1 40 RYIKKPAAQSSAQNQTAQSELRK 62
                 44444444444444444444443 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3e-10
  Terminase_2   3 pKqkrFvdeYikdlNatqAaikAgyskktArsigselLrkpkIkkaIreakaereertiieadeVlqellkiaraeitde 82 
                  p++++F++   + + ++ Aai Ag    +A++++s+l + p+++++Ir++ +e       +a+++ +  +k a+   +d+
   EHU01339.1  94 PQHEQFAQNIAQGMTQKDAAICAGFAPSNAEAQASKLFKRPDVRQRIRQLRQEAAMLVAFNAKDLAELSYKAAQDALEDK 173
                  7889999999999****************************************************999999988777665 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0018       6.4       8      34 ..      18      43 ..      16      50 .. 0.90
   2 ?   -2.5   0.0       1.5   5.3e+03       6      19 ..     101     113 ..      98     113 .. 0.82
   3 !    5.9   0.0    0.0037        13      14      28 ..     181     195 ..     164     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0018
      HTH_29  8 laeGvstvsqiAkllglsrrtvyrwlk 34
                ++ G s +++ +++ gl +++ +r++k
  EHU01339.1 18 AKSGIS-PKDWCEAQGLNYSSARRYIK 43
                578997.99*****************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
      HTH_29   6 lllaeGvstvsqiA 19 
                 +++a+G+ t +++A
  EHU01339.1 101 QNIAQGM-TQKDAA 113
                 78999*9.899987 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0037
      HTH_29  14 tvsqiAkllglsrrt 28 
                 +++++A+l+g++++t
  EHU01339.1 181 NIKNAAQLTGIDMST 195
                 99***********99 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00017       0.6      11      40 ..      14      44 ..      10      51 .. 0.87
   2 ?    0.7   0.0      0.14   4.9e+02      11      27 ..     100     116 ..      95     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
      HTH_23 11 llllae.GlsvreIAreLgvsrrTvyrwlkr 40
                l  +a+ G+s+++ +++ g +++  +r++k+
  EHU01339.1 14 LSEHAKsGISPKDWCEAQGLNYSSARRYIKK 44
                5556667**********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
      HTH_23  11 llllaeGlsvreIAreL 27 
                 ++  a+G++++++A   
  EHU01339.1 100 AQNIAQGMTQKDAAICA 116
                 567789*******9765 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4     2e-05     0.072     112     171 ..     124     185 ..     116     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
                 ..----EEE---HHHHHHHC-S.S-EEEEEEE-S..S-HHHHHHHHHHHTT-SEEEEEEGGG CS
         DFP 112 eeltleleknpdilaelaekkkkkqllvGFaaet..eellenareklerkgldlivaNdvsk 171
                 e  + +l k pd+ +++++ ++++ +lv+F a++  e   + a++ le+k++  ++ N  + 
  EHU01339.1 124 EAQASKLFKRPDVRQRIRQLRQEAAMLVAFNAKDlaELSYKAAQDALEDKKFGQVAPNIKNA 185
                 45568999*********999999999*******8734556788999****999988775544 PP

>> Aromatic_hydrox  Homotrimeric ring hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.3e-05      0.15      50     180 ..      99     228 ..      87     238 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.3e-05
  Aromatic_hydrox  50 lihkdsqlviesdlalplGfkPvgeratevkvvvddtgpkGllnlytehtepv.featildksaregttyeaavgldvsiWlPgvlkvenfPyp 142
                      +  + +q ++++d a+  Gf+P+  +a+  k ++ ++ ++ + +l +e   +v f+a+ l + + + + ++a    + +   P + +  ++   
       EHU01339.1  99 FAQNIAQGMTQKDAAICAGFAPSNAEAQASKLFKRPDVRQRIRQLRQEAAMLVaFNAKDLAELSYKAA-QDALEDKKFGQVAPNIKNAAQLTGI 191
                      55667788899*******************************99987777766244444443333333.4556667777788888888888888 PP

  Aromatic_hydrox 143 dmityelyvPidentyeyfellgkeaateeerkefede 180
                      dm+t +  v +d     y ++   +++++  ++ + d+
       EHU01339.1 192 DMSTSKTEVNVDLAGLSYGKVC-IVTPANCPEDVWADH 228
                      8888888888887766665544.344444444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1495  (0.0833845); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1959.77
//
Query:       EHU01340.1  [L=406]
Description: hypothetical protein CKS_4091 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-38  130.8   0.0    5.7e-38  130.5   0.0    1.1  1  Terminase_3   Phage terminase large subunit
    8.6e-09   36.0   0.0    2.5e-08   34.4   0.0    1.8  1  Terminase_3C  Terminase RNAseH like domain


Domain annotation for each model (and alignments):
>> Terminase_3  Phage terminase large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   6.3e-42   5.7e-38       7     200 ..       1     189 [.       1     190 [. 0.95

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 6.3e-42
  Terminase_3   7 lvggrgssKsysialkivlkklkekrkalvlRkvkntlkdSvfaeikellselgltklfkilkskieielengskflFkgl.ddpaklkSiknlsdlw 103
                  ++ggrg++Ks++ia+ +vl    e    l+ R+++n++  Sv a ++ ++ +lgl ++ k+++ +i  e  ng++f Fkgl ++++++kS++ +   w
   EHU01340.1   1 MYGGRGGGKSVEIARALVLLGTLETMIILCAREFQNSIDASVLALLESEIINLGLSHFYKVKNNEI--EGRNGTRFTFKGLrNNINSIKSMHGIRICW 96 
                  59************************************************************9877..9************8889************* PP

  Terminase_3 104 lEEasevseedidelvetlrapeqekqiilsfNPvsesnwvykrffkddekekdekddvlihkstyrdnefLdeedvkkleelkkenpdkyrivvlG 200
                  +EEa++vs+++ d l++t+r   +++++++sfNP++e++ +y+   +++e  +  +   +i ++ y++n f ++   +++e  k+ +++ y ++ lG
   EHU01340.1  97 VEEAQTVSQDSWDILTPTVR--ANKSEVWVSFNPREEQDPTYRMMKRHEE--DPPDGGAMIRRVNYDENAFFPDVLRQEMEYCKRIDYEAYEHIWLG 189
                  ********************..999******************9954433..333699**********************************99888 PP

>> Terminase_3C  Terminase RNAseH like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.8e-12   2.5e-08       1     154 [.     225     388 ..     225     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.8e-12
  Terminase_3C   1 DsGfdekansklyvaldiedkvlwleeevydat..............nellddrasevikd..................kthlkevidgdsaevkgi 65 
                   D+Gf ++++++++  +   + +l++e e y+ +              +++                                 +  i gd   +++i
    EHU01340.1 225 DFGFANDPSTLIRCFI--IGTRLYIEYEAYG-IgvelddlwkmyagkEGA----------TaeqlarwkvaddklypgvPDARRWPIHGDNSRPETI 308
                   8999999999988887..6889999999999.646665555555554333..........14444444445567777777788999*********** PP

  Terminase_3C  66 aalksqthrktvrakkaqgsvlqkdrflktfravlkgeyLdpeaipkleqlisElnkyqykrdkgnrliqkdemrkdphtidAlmyala 154
                    +l +q ++ +  a+k +gsv  ++  lk f ++++        + +++++  E + y yk+d  + +    + +k +h+ dA +y+l+
    EHU01340.1 309 SYLARQ-GFSISAASKWPGSVEDGITYLKGFEEIII--------HERCKHMADEARLYSYKVDRMTGEVLPVVADKHNHCWDAVRYSLD 388
                   ******.****************************9........********************9888775888888**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2869.64
//
Query:       EHU01341.1  [L=489]
Description: hypothetical protein CKS_4092 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-110  367.7   0.0   5.8e-110  367.4   0.0    1.1  1  DUF1073   Protein of unknown function (DUF1073)


Domain annotation for each model (and alignments):
>> DUF1073  Protein of unknown function (DUF1073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.4   0.0  3.2e-114  5.8e-110       2     355 ..      50     402 ..      49     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 367.4 bits;  conditional E-value: 3.2e-114
     DUF1073   2 ellalyrqswlarkiidipAedmlrngielkgekdkdqlkaieaelkrLglkeallealkwarlfGgaallikvkdededlskPldpekvgkgslkglr 100
                 +++ +yr+s ++  ++d++A+dm+r+g+ +++e +++++  +e  ++ L ++++l++++kw+rl+Gga+ +i+++++   + +Pl++e++gkg++kg+ 
  EHU01341.1  50 QIEWAYRSSSIIGSAVDAIADDMTRKGLRITSEIEPKARGVLESLFDDLEIWDRLNDIIKWSRLYGGAVGFIMIEGQ--APFTPLRLETIGKGKFKGIL 146
                 78889************************************************************************..8******************* PP

     DUF1073 101 vldreev.ptsneldsdplspdygkpetYevkskedgtaavkvHkSRlirfigkelpdmlkpaenfwGeSvlqslldavkrfdraaasvaqlleranll 198
                  ldr+++ p+ + + +d+  p+ gkpe+Y v  +++g  a+k+H+SRlirf+g  lp++++++en wG+S++++++d++++fd+a+  +aql+++a+l+
  EHU01341.1 147 PLDRWMInPNLQLRIKDMG-PHLGKPEFYDVVATASGIPAWKIHHSRLIRFDGVTLPYQQAQTENEWGMSIVERIWDRLTAFDSASMGAAQLVYKAHLR 244
                 *******554445555555.******************************************************************************* PP

     DUF1073 199 viktdgladalaagdee.deleerleliklarsnegmlvidkeeeleqkstslsglkdllaqfqeklaaaskiPltrLfGqspaGlnatGegDlrnYyd 296
                 ++k+++l++ +a+g+ + d+l +++++i+l++sneg++++d e+e++++++s++gl+d++++f+e++++a +iPl+rLfGqsp+G+ +tG+ Dl+nYyd
  EHU01341.1 245 TMKIKKLRELIAMGGPAlDALMKNMDMIRLFQSNEGLTLMDGEDEFDTHQYSFAGLDDIISKFAEQISGAVGIPLVRLFGQSPKGF-STGDADLANYYD 342
                 **************9999********************************************************************.8*********** PP

     DUF1073 297 rikalQeaelrpvLerllellllselge.rpddlsfeFnpLwqlsekekAeirkknaead 355
                 +i+++Qe++lr++L++l++++ +selg+  pdd++feFnpLwq+s+ ++ +++ ++++a+
  EHU01341.1 343 TISTQQERRLRQPLRKLFDVMYRSELGSaLPDDFTFEFNPLWQMSDVDRSTVATNTVNAI 402
                 ***************************999*********************999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3451.71
//
Query:       EHU01342.1  [L=414]
Description: CP4-57 family phage integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-19   71.0   0.0    3.8e-19   69.1   0.0    1.9  2  Phage_integrase  Phage integrase family
    1.1e-15   57.7   0.1    2.9e-15   56.4   0.1    1.7  1  Arm-DNA-bind_3   Arm DNA-binding domain
  ------ inclusion threshold ------
      0.034   14.6   0.2          4    7.9   0.0    2.4  2  SNase            Staphylococcal nuclease homologue


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.34     2e+03     134     149 ..      75      89 ..      45     110 .. 0.85
   2 !   69.1   0.0   6.3e-23   3.8e-19       3     169 ..     214     376 ..     212     378 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.34
                      HHHHHHHHHHHCTSHH CS
  Phage_integrase 134 RhsfataLleagvdlr 149
                      R + a++Ll++g+d++
       EHU01342.1  75 R-ESARELLRNGIDPQ 89 
                      4.56888889988876 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 6.3e-23
                      HHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   3 ltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      ++++e  +ll+a+e+  ++   k+++ + + t +R  E ++ +++++d+ +++++++++++K+++ ++vpls +al  l +l  ++     +++
       EHU01342.1 214 IRPEEFPSLLSAIESlDSDEFYKMIVHWQFLTMTRPIEGVRAEWSEIDFVENTWTIPAHKMKKKRVHVVPLSTQALDILSKLRPVT----GNKK 303
                      7899***********9888889**************************************************99999998888888....788* PP

                      BSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCC CS
  Phage_integrase  96 llfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthv 169
                      ++f s    + s+  ++++++++  +++ + +lt+H lR  ++ aL+e+g++++v++ +l+H     + + Y++ 
       EHU01342.1 304 YVFNSF--IKSSQPVFKGMVNELIVRTEFKGKLTSHGLRSVASVALNEEGFNPDVIEAALAHVGSDAVrNAYNRT 376
                      ******..666788899**********************************************999999999876 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.1   4.9e-19   2.9e-15       1      73 [.       8      94 ..       8      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4.9e-19
  Arm-DNA-bind_3  1 LTdkaikaladsdkklprd.......GLglrvtpsGaktfvlryr...........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    LT+ ++k+++  +     d       GL ++++++G+k +++ry            +G +p vsl eARk+++ +r+l+++GiDP+eek++
      EHU01342.1  8 LTNVEVKSAKSGT---A-DyalydgdGLLICIKSTGSKIWRVRYShprtgkrqtltVGNFPYVSLIEARKARESARELLRNGIDPQEEKRR 94
                    6888899966333...1.12344578******999******************9766********************************96 PP

>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0093        56      24      63 ..      76     119 ..      46     130 .. 0.75
   2 ?    7.9   0.0   0.00068         4      15      82 ..     302     370 ..     292     387 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET....TE CS
       SNase  24 keAkeflkklvlqkkvvvleldkkkDkygrllayvyln....kk 63 
                 + A+e l++ +  ++ +  +l +++D++g++l  v  +    kk
  EHU01342.1  76 ESARELLRNGIDPQEEKRRILRERQDYNGNTLRLVAEQwfrlKK 119
                 6799999999999999999999999****999888776444433 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00068
                 TTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEETTEEHHHHHHHTTSSEE--.-BT CS
       SNase  15 pkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvylnkknineeLvkeGlArvye.vye 82 
                 +k   + f+k ++ + k +v++  v+++ ++k + +  r +a+v ln++ +n   +++ lA v   +++
  EHU01342.1 302 KKYVFNSFIKSSQPVFKGMVNELIVRTEFKGKLTSHGLRSVASVALNEEGFNPDVIEAALAHVGSdAVR 370
                 44567889999999999999965566555566677777***********************97663333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3027.01
//
Query:       EHU01343.1  [L=72]
Description: hypothetical protein CKS_4095 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-07   31.1   0.1    1.9e-07   30.8   0.1    1.1  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1     1e-11   1.9e-07       3      51 .]       8      59 ..       6      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1e-11
  Phage_AlpA  3 ilrlreVeqktgl.srstiYrlikdg..eFPkkvkLGvrsVgWlesEIdeWi 51
                i+  +e++qk+ + +rs+ +++ +d+  +FPk++++G r+ gW  +E++ W+
  EHU01343.1  8 IITAKEIMQKLRFnARSSFDEFCSDEsvNFPKAIRIGIRRKGWFVDEVESWL 59
                78899*******977*********87689**********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 559.00
//
Query:       EHU01344.1  [L=249]
Description: putative CI repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-29  102.4   0.1    2.6e-29  101.7   0.1    1.4  1  Phage_ASH  Ash protein family


Domain annotation for each model (and alignments):
>> Phage_ASH  Ash protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.1   1.5e-33   2.6e-29       3     107 .]      94     200 ..      92     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 1.5e-33
   Phage_ASH   3 ekalAKSvagignpeikkatndat.plvffvrsalthkefrnkalss.MVAlagqpsgwPvsavagpanpvratthkeiavSggsltnklkeaaimati 99 
                   ++AKSv g++np++  at+da+ + vff++ a +h++ +++     MVAl gqpsgwPvs  ag+ +p+++t+ +e+++Sgg+ +++l e ++m+ti
  EHU01344.1  94 LPVSAKSVTGRENPCMLLATPDAIfNRVFFCVDATAHPFTAAMIRTVsMVALVGQPSGWPVSSNAGILTPASVTAPYERENSGGDSFRLLLEFIAMMTI 192
                 5689*******************535566*********9777764435*************************************************** PP

   Phage_ASH 100 plsthskf 107
                 p+++h++f
  EHU01344.1 193 PVQNHPNF 200
                 *****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1978.05
//
Query:       EHU01345.1  [L=292]
Description: hypothetical protein CKS_4097 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-09   38.0   0.2    4.9e-08   32.9   0.2    2.1  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2   2.8e-12   4.9e-08       5     168 ..      36     273 ..      33     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.8e-12
                      HHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS... CS
  Phage_integrase   5 edeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse... 95 
                       de ++l + ++++++ +  l   + + tG R+s++++Lr++++++e g +++   + K+ k+ +   +++  e ++++ ++a + a ++    
       EHU01345.1  36 RDEQRKLRERIQQTQPEWLLLWWDISVCTGWRTSDVCALRYSCINWETGQATI--VVAKQTKAAEARATRKGIEIVRQQRKDAARLAADHIaym 127
                      57777788888888899999999***************************999..888888888888888888888888888822233332577 PP

                      ..........................................................BSSBET.........TSSB--HHHHHHHHHHHHHH. CS
  Phage_integrase  96 ..........................................................llfask.........rgkplsrqtvrkafkravee. 121
                                                                                l+f +           +  ++rqt++k ++++ +  
       EHU01345.1 128 kwdsvscdelaadmtaeeqaivfelvsradvkhdtkqlppgiikrlrnrlesnfvdddLVFSRSqiesnrchsLEGSVTRQTIWKKLHSVMQWf 221
                      788888899999999999999999999999999999****999999999999999999888777888888888777788888888887777665 PP

                      ...CT-SSC--TTHHHHHHHHHHHHHCTSHHHH..HHHHT-SSCCHHHHHHC CS
  Phage_integrase 122 ...agiekpltpHtlRhsfataLleagvdlrvv..qkllGHssisttqiYth 168
                          +++ +l+  + R+ +a +L+ ag  +  +   ++lGHs+ ++t++Y +
       EHU01345.1 222 srfVNTKLRLSAYSSRKIAAFNLMSAGGEQGLLiaSEMLGHSNPAITRTYLQ 273
                      44556669*******************9866542289*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2537.79
//
Query:       EHU01346.1  [L=74]
Description: hypothetical protein CKS_4098 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 614.73
//
Query:       EHU01347.1  [L=772]
Description: putative phage primase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-14   53.1   0.7    1.2e-13   51.2   0.7    2.1  1  Toprim_3         Toprim domain
    9.8e-13   48.2   6.7      2e-12   47.2   6.7    1.5  1  Prim_Zn_Ribbon   Zinc-binding domain of primase-helicase
      1e-09   38.7   0.0    3.7e-09   37.0   0.0    2.0  2  Pox_D5           Poxvirus D5 protein-like
    1.2e-07   32.1   0.0    3.7e-07   30.5   0.0    1.8  1  D5_N             D5 N terminal like
     0.0002   21.7   0.3    0.00066   20.1   0.3    2.0  1  Toprim_2         Toprim-like
    0.00036   20.5   2.0    0.00076   19.4   2.0    1.5  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
    0.00067   20.1   0.1     0.0022   18.4   0.1    1.9  1  Toprim_4         Toprim domain
      0.001   18.6   0.1     0.0018   17.8   0.1    1.4  1  PALP             Pyridoxal-phosphate dependent enzyme
     0.0052   16.3   2.3       0.01   15.3   2.3    1.4  1  TF_Zn_Ribbon     TFIIB zinc-binding
  ------ inclusion threshold ------
      0.014   16.0   0.1      0.032   14.8   0.1    1.6  1  RFX_DNA_binding  RFX DNA-binding domain
      0.023   14.5   0.0      0.068   13.0   0.0    1.7  1  zf-CHC2          CHC2 zinc finger
      0.038   14.4   0.6       0.11   12.8   0.6    1.8  1  Lar_restr_allev  Restriction alleviation protein Lar
      0.054   13.4   3.2       0.14   12.1   3.2    1.7  1  Nudix_N_2        Nudix N-terminal
      0.058   13.1   0.2       0.47   10.2   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain
      0.096   13.4   0.0        7.4    7.3   0.0    2.6  2  RhoGAP-FF1       p190-A and -B Rho GAPs FF domain
       0.15   12.0   0.2       0.34   10.9   0.2    1.6  1  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
       0.64    9.8   8.2        2.2    8.0   8.2    1.9  1  zf-RRN7          Zinc-finger of RNA-polymerase I-specific TFI


Domain annotation for each model (and alignments):
>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.7   1.2e-16   1.2e-13       1      93 [.     188     292 ..     188     294 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.2e-16
    Toprim_3   1 tliivEGietaLsileartgaaviAllsaanlkaiawp...e.rgkrvviaaDnDaand...........Greaaeklaerleaagieavllep.aege 83 
                 t+i++EG++t Ls+++ +++a ++++l+a+nl a+a     + +  r++iaaDnD ++            Gr aae++a+++++     v+l+p +e++
  EHU01347.1 188 TVIVAEGLATTLSAQQMQPDALAVVALDAGNLPAVAAVlreKyPDARIIIAADNDIHALsdgqttqkpntGRLAAEQAAKAVNG----WVALPPtEEKA 282
                 589***********999***************99998877667999***********99************************8....88888877778 PP

    Toprim_3  84 DwndvlqkeG 93 
                 Dwnd++q +G
  EHU01347.1 283 DWNDYHQLHG 292
                 *******998 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   6.7   1.9e-15     2e-12       3      38 .]      32      66 ..      30      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.9e-15
                    EE--TTTT-TTTEEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon  3 hspCPvCGGrDrFrfddkdgrGtwfCrqCggggdgl 38
                    ++pCPvCGG +r+rfdd + rGt+ C++C g+g+gl
      EHU01347.1 32 EGPCPVCGGDTRYRFDDIEQRGTYHCSHC-GAGTGL 66
                    79***************************.****96 PP

>> Pox_D5  Poxvirus D5 protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.8   6.1e+03      37      68 ..     363     397 ..     359     408 .. 0.75
   2 !   37.0   0.0   3.5e-12   3.7e-09      18      79 ..     703     767 ..     673     772 .] 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.8
      Pox_D5  37 kngykpvlskrtFqkrlkkileeg...fekkkkkk 68 
                 +ng+++++s  ++ ++++ i +e+   f k+  ++
  EHU01347.1 363 QNGVWEIISTLQLSREMAVIYNEHqtnFGKRTINN 397
                 68888888888999999999999445588888774 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 3.5e-12
      Pox_D5  18 kstrvpsdvlYeaYkafcekngykpvlskrtFqkrlkkilee...gfekkkkkkgqqpneyleyi 79 
                 ++ r p+++lY+ Y+ f+e  g+ ++ls ++F+k +k++ +e   ++  +  k   q+n+++++ 
  EHU01347.1 703 DGIRQPRRYLYHLYLDFMEYQGLSKPLSVTEFGKAIKEAAKEyksEYLTRTIKGRRQTNVQITDK 767
                 7899**************************************9766*******999999998876 PP

>> D5_N  D5 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   3.5e-10   3.7e-07       4     147 ..     343     469 ..     339     473 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 3.5e-10
        D5_N   4 ladrygkd.vryvkglgewyvwdGthWeedekeaireladkvaeaiaeeaeeaksalkalkkfakssrskkkvdnvlreaaelprldleideldadpll 101
                 l +ry  d ++ +++ + +y +++ +We      + +l +++a  + e++                +  k+ ++n+++++      ++ + + + +++l
  EHU01347.1 343 LSQRY--DgICIHPESEAFYIYQNGVWE---IISTLQLSREMAVIYNEHQ---------------TNFGKRTINNAVEAL-----KVVAPIMGEPRRNL 416
                 55666..338888888888887666688...6678888888887777877...............9999**********9.....88999999999*** PP

        D5_N 102 lafaNGvldlktgelrdhepedyltkitpvdy.........dpdadcptfkewld 147
                 ++faNGv+d   g ++ h+ +++l ++ ++ y         ++  ++p f++wl 
  EHU01347.1 417 IPFANGVYDMASGAFTAHSADNWLMNHNGIGYtaatpgenlHD--NAPNFHKWLS 469
                 ********************************55554444433..8899999996 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   6.3e-07   0.00066       1      90 []     190     288 ..     190     288 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.3e-07
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalteaalkllerypekkvvlalDnD....kaGrkaakrlaellreag....vrekirelp..egkDwnel 89 
                 +v+Eg    lS  q++++   +vval   +l+  a+ l e+yp++++++a DnD      G++  k    +l  ++    v+ +++ +p  e+ Dwn++
  EHU01347.1 190 IVAEGLATTLSAQQMQPD-ALAVVALDAGNLPAVAAVLREKYPDARIIIAADNDihalSDGQTTQKPNTGRLAAEQaakaVNGWVALPPteEKADWNDY 287
                 689999999*****9996.899****888788888888889999**********4444356665544444443333345588999988875667****9 PP

    Toprim_2  90 l 90 
                 +
  EHU01347.1 288 H 288
                 6 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.0   7.2e-07   0.00076      19      44 ..      34      61 ..      29      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.2e-07
  Zn_Tnp_IS1595 19 fvCPhCgsrkayrikt...rglfqCkeCr 44
                   + CP Cg+++ yr+ +   rg ++C++C+
     EHU01347.1 34 P-CPVCGGDTRYRFDDieqRGTYHCSHCG 61
                   5.*******9998888888*********8 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.1e-06    0.0022       2      71 ..     188     253 ..     187     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.1e-06
    Toprim_4   2 eiiiVEgyaDvlaleka..giknvvavlggalspldgirpeklktenlveaekkvkevilaldgDa....eGeata 71 
                 ++i+ Eg a+ l++ ++      vva   g+l++++ + +ek++            ++i+a d+D     +G++t 
  EHU01347.1 188 TVIVAEGLATTLSAQQMqpDALAVVALDAGNLPAVAAVLREKYPD----------ARIIIAADNDIhalsDGQTTQ 253
                 79***************878889999999****************..........9**********9999666654 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.7e-06    0.0018     106     214 ..     160     271 ..     152     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
                 EECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS. CS
        PALP 106 evggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslra 204
                 +     d  ++++a   ++ + + +++++++p  +   + ++  + +q+  +pda+ v +  +g++ ++aa l+e+ pd r+i++  +  +al ++  +
  EHU01347.1 160 KP----DGGKRLVAGTVKK-GAFCVLNSGGSPETVIVAEGLATTLSAQQ-MQPDALAVVALDAGNLPAVAAVLREKYPDARIIIAADNDIHALSDGQTT 252
                 54....4455566666777.88999999999998888888888887555.58************************************9*****99977 PP

                 .S.SS..B..........S CS
        PALP 205 grrvtvpvs.........d 214
                  ++ t   +          
  EHU01347.1 253 QKPNTGRLAaeqaakavnG 271
                 7666655555333333330 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.3   9.9e-06      0.01       3      27 ..      35      62 ..      33      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.9e-06
                  ETTTTCEE.CHEE..TSTTCEEESSSSB CS
  TF_Zn_Ribbon  3 CPnCgstn.lveD..pergelvCtdCGl 27
                  CP+Cg+++ + +D  + rg++ C+ CG+
    EHU01347.1 35 CPVCGGDTrYRFDdiEQRGTYHCSHCGA 62
                  ******88788888************95 PP

>> RFX_DNA_binding  RFX DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1     3e-05     0.032      20      53 ..     707     741 ..     700     753 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
  RFX_DNA_binding  20 vprqevYaeYlsicsklkl.kplnaasFgKlirsv 53 
                       pr+ +Y+ Yl++++ ++l kpl+ ++FgK i++ 
       EHU01347.1 707 QPRRYLYHLYLDFMEYQGLsKPLSVTEFGKAIKEA 741
                      5899****************************985 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.5e-05     0.068      45      93 ..      45      92 ..      24      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
     zf-CHC2 45 sftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklglel 93
                 f   ++++ y+C  Cga G  ++ +m++ ++s  +a+  +a+++ l +
  EHU01347.1 45 RFDDIEQRGTYHCSHCGA-GTGLDLVMKVRQCSVRDAAVLVAEAMALPM 92
                56677899********97.789*****************9999988766 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   0.00011      0.11       5      37 ..      34      63 ..      33      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
  Lar_restr_allev  5 pCPfCggravlersqrvvaeigqcvyCadCgas 37
                     pCP Cgg+  + ++   + +   + +C  Cga+
       EHU01347.1 34 PCPVCGGDTRYRFDDIEQRG---TYHCSHCGAG 63
                     9************9999887...9********3 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.2   0.00013      0.14       3      29 ..      35      61 ..      35      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                -TTT--B-EEE--TT-SS-EEEETTTT CS
   Nudix_N_2  3 CsqCGtpvelripdgDnreRlvCpaCg 29
                C+ CG+ +++r  d ++r  + C++Cg
  EHU01347.1 35 CPVCGGDTRYRFDDIEQRGTYHCSHCG 61
                **************************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   1.2e+03      23      37 ..     108     123 ..     100     126 .. 0.77
   2 ?   10.2   0.1   0.00044      0.47      27      58 ..     502     533 ..     493     536 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
      AAA_29  23 g.atlltGpsGsGKST 37 
                 + +  ++G+s sG S+
  EHU01347.1 108 DkVSAMAGQSKSGQSA 123
                 4478899******997 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00044
      AAA_29  27 ltGpsGsGKSTllDAiqalLvpak.kvrfNkaa 58 
                 +tG  GsGKS +   i++lL +++ +++ N aa
  EHU01347.1 502 ITGSGGSGKSVFT-QIATLLAGQHnTASGNMAA 533
                 9*********998.8999999999556666666 PP

>> RhoGAP-FF1  p190-A and -B Rho GAPs FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.007       7.4      40      61 ..     279     300 ..     275     305 .. 0.92
   2 ?    3.0   0.0      0.16   1.7e+02      37      67 ..     488     519 ..     478     527 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.007
  RhoGAP-FF1  40 skekefeeyvelfGtekakklF 61 
                 ++++++++y +l G e+a k F
  EHU01347.1 279 EEKADWNDYHQLHGLEAATKAF 300
                 5789****************99 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
  RhoGAP-FF1  37 kklskekefeeyvelfGte.kakklFrrhikk 67 
                   l+++ +++ ++e+ G+  ++k++F++    
  EHU01347.1 488 MVLANRYDWQLFLEITGSGgSGKSVFTQIATL 519
                 57999************962678899986555 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00032      0.34       3      26 ..      33      61 ..      31      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
  PhnA_Zn_Ribbon  3 pkCplCaSeytY.....edgallvCpeCa 26
                    ++Cp C+ ++ Y     e +  + C++C+
      EHU01347.1 33 GPCPVCGGDTRYrfddiEQRGTYHCSHCG 61
                    79**************************7 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.2    0.0021       2.2       4      28 ..      32      61 ..      30      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
     zf-RRN7  4 gppCgvCgc.rsftldd....GfyyCrrCh 28
                + pC+vCg+ +++++dd    G+y C +C+
  EHU01347.1 32 EGPCPVCGGdTRYRFDDieqrGTYHCSHCG 61
                679******989999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5219.60
//
Query:       EHU01348.1  [L=187]
Description: hypothetical protein CKS_4100 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1421.27
//
Query:       EHU01349.1  [L=55]
Description: hypothetical protein CKS_4101 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.0   5.2        0.2   11.8   5.2    1.0  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus
       0.63   10.3  10.3       0.93    9.8  10.3    1.3  1  TPX2      Targeting protein for Xklp2 (TPX2)


Domain annotation for each model (and alignments):
>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.2   2.2e-05       0.2     102     148 ..       7      53 ..       2      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
     UPF0242 102 keeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekq 148
                  +e  +k +e  r  ++n++Lq   ++  e  +e ++e+e++L++++
  EHU01349.1   7 DREAMQKRNEFDRTVQRNENLQRNVNDFWERQAEKQQEAEDRLKKQR 53 
                 56788999************************************985 PP

>> TPX2  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  10.3    0.0001      0.93       8      47 ..      12      53 ..       5      54 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
        TPX2  8 ekRkeFdkkleekekakeaek..eereakkkeeeeeeikqLR 47
                +kR eFd+++   e+ +       er+a+k++e e  +k+ R
  EHU01349.1 12 QKRNEFDRTVQRNENLQRNVNdfWERQAEKQQEAEDRLKKQR 53
                8**********9999999888667888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1800  (0.100396); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 456.48
//
Query:       EHU01350.1  [L=64]
Description: hypothetical protein CKS_4102 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 568.87
//
Query:       EHU01351.1  [L=200]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.23   11.7   0.0    1.6  1  DNA_Packaging_2  DNA packaging protein


Domain annotation for each model (and alignments):
>> DNA_Packaging_2  DNA packaging protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.23      40      62 ..       7      29 ..       3      42 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
  DNA_Packaging_2 40 LkDkhkeqiGklqPDvtilGGla 62
                     L+++h   iG + PDvti   + 
       EHU01351.1  7 LLNRHSRSIGTVIPDVTISEKHY 29
                     89***************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 1813.03
//
Query:       EHU01352.1  [L=356]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2981.11
//
Query:       EHU01353.1  [L=156]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-26   89.8   0.1    2.4e-25   88.5   0.1    1.7  2  Gp138_N      Phage protein Gp138 N-terminal domain
    2.9e-06   27.3   7.8    5.7e-06   26.3   7.8    1.5  1  Phage_spike  Phage spike trimer
  ------ inclusion threshold ------
       0.16   10.6   2.1        0.2   10.2   2.1    1.1  1  FapA         Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.1     4e-29   2.4e-25      38      98 .]       2      62 ..       1      62 [. 0.98
   2 ?   -1.6   0.0      0.48   2.9e+03      42      52 ..      98     108 ..      70     127 .. 0.67

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 4e-29
     Gp138_N 38 dvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlhdlsdafaivG 98
                d pvvfprggg+tltfp+kaGdeclvvfs+ +id+w+q+Gg q + ++r+hd sdaf+i+G
  EHU01353.1  2 DAPVVFPRGGGCTLTFPIKAGDECLVVFSQSNIDFWWQNGGSQLSLNQRRHDFSDAFVIPG 62
                89**********************************************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.48
     Gp138_N  42 vfprgggvtlt 52 
                 + ++gg++tl 
  EHU01353.1  98 TATSGGQITLN 108
                 33444444444 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   7.8   9.5e-10   5.7e-06       4      51 ..      96     146 ..      93     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 9.5e-10
                  EEEEE-SSEEEEESSEEEEEEEEEEE.EEEESSEEEEES-E..EEESS-EE CS
  Phage_spike   4 tatvkAstsitLdtPevecTgnLtvg.tltvqgGGtikGdi..thsgGnls 51 
                   +t ++  +itL++P+v++ gn++v  +lt++g+ +++G    th++Gn++
   EHU01353.1  96 DVTATSGGQITLNAPQVTINGNVQVNgSLTATGDVKGSGKSlsTHTHGNVQ 146
                  589999********************9****999999999888******97 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.1   3.4e-05       0.2     187     222 ..      94     131 ..      87     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.4e-05
        FapA 187 kgdVdlst.GnIkfkG.sViikGnVeegmkVkasgdit 222
                  gdV   + G I+ +   V+i+GnV+ + + +a+gd++
  EHU01353.1  94 GGDVTATSgGQITLNApQVTINGNVQVNGSLTATGDVK 131
                 689*****9***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 1074.65
//
Query:       EHU01354.1  [L=198]
Description: hypothetical protein CKS_4107 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-18   67.6   0.4    1.8e-18   67.3   0.4    1.1  1  Terminase_2  Terminase small subunit
  ------ inclusion threshold ------
       0.49   11.1   3.6        5.4    7.8   0.3    2.6  2  LTXXQ        LTXXQ motif family protein


Domain annotation for each model (and alignments):
>> Terminase_2  Terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.4     2e-22   1.8e-18       1     129 [.      14     165 ..      14     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 2e-22
  Terminase_2   1 LTpKqkrFvdeYikdlNatqAaikAgyskkt..ArsigselLrkpkIkkaIreakaereertiieadeVlqellkiaraeitdeve............ 84 
                  LT+ q+rFv+e +k  N+tqA+  Ag ++k   Ars + ++ ++ ++++ ++  + e+ +++i++ +e l++l++iar  i+d+ +            
   EHU01354.1  14 LTQLQRRFVTELLKGQNQTQAYRLAGGKAKGdgARSKAAQIVTNSNVQAFLQAVQYEVVSEAIMTRTEALERLTSIARTTIGDLATfgthragedddg 111
                  8999*********************99998889***************************************************************** PP

  Terminase_2  85 ......rvklkdseevdkeilrevkegke...gvkvklkDklkAlellakhlgl 129
                          ++k+s+++++e l++v+e +    g kvkl+D + A++++a + g 
   EHU01354.1 112 qpveqtVWRFKNSDQLTPEQLAAVSELTAskdGLKVKLHDPKTAIKQIAEMQGW 165
                  ****99889**********9999999887888****************998755 PP

>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3   0.00061       5.4      14      49 ..       2      37 ..       1      89 [. 0.71
   2 ?    4.3   0.2    0.0075        67      14      37 ..     126     149 ..     114     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00061
                ---HHHHHHHHHHHHHHHHHS---..-HHHHHHHHH CS
       LTXXQ 14 kLtdaQkaalkalaeaaraeakplkakkeemramrk 49
                 LtdaQk+ ++al++ +r+   +l + + + +a r 
  EHU01354.1  2 TLTDAQKGLFNALTQLQRRFVTELLKGQNQTQAYRL 37
                69***************9999999444444444433 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0075
                 ---HHHHHHHHHHHHHHHHHS--- CS
       LTXXQ  14 kLtdaQkaalkalaeaaraeakpl 37 
                 +Lt++Q aa  +l+++    + +l
  EHU01354.1 126 QLTPEQLAAVSELTASKDGLKVKL 149
                 799999999999988776655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1399.04
//
Query:       EHU01355.1  [L=147]
Description: hypothetical protein CKS_4108 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1158.33
//
Query:       EHU01356.1  [L=242]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-15   56.3   0.1    9.8e-15   55.3   0.1    1.5  1  Phage_Mu_F  Phage Mu protein F like protein
  ------ inclusion threshold ------
      0.045   14.4   0.6       0.24   12.1   0.1    2.1  2  RsbRD_N     RsbT co-antagonist protein rsbRD N-terminal domai
       0.13   12.2   0.1       0.23   11.4   0.1    1.4  1  DUF5356     Family of unknown function (DUF5356)


Domain annotation for each model (and alignments):
>> Phage_Mu_F  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.1   1.6e-18   9.8e-15       2     110 ..     101     208 ..     100     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.6e-18
  Phage_Mu_F   2 kirdavtqaiarGegeeelakelkkrgqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvavkdsrtrpeHaaldGkvfkvddpfwq... 97 
                 +i+++ ++ +a+G + +++ake++  g++  +sr+++iarte+ ra ++a ++ +a   + + + + ++++ d  +r +Ha+++G  + + +p+     
  EHU01356.1 101 DIQNRAIETMAAGGRADAFAKEIAASGDV-AASRAKLIARTEVGRA-VTALTQARA--LASGSQGYIWRTAHDGDVRHSHAEMEGLFVYWTNPPTLdgm 195
                 5899999**********************.899************7.777775555..55555667**************************9974346 PP

  Phage_Mu_F  98 tgappedvnCRCr 110
                 tg+++  +nCRC 
  EHU01356.1 196 TGHAGALPNCRCW 208
                 889*********5 PP

>> RsbRD_N  RsbT co-antagonist protein rsbRD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     4e-05      0.24       8      54 ..      25      70 ..      23      91 .. 0.82
   2 ?    0.5   0.1      0.16   9.6e+02      28      47 ..     133     152 ..      94     179 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
     RsbRD_N  8 kkeailekWleevlatypiesagllseaelreqlrelldallaalas 54
                + ++i++ W+++v++     s  + se+e re ++++  +l +++++
  EHU01356.1 25 RYSEIIDGWANQVATGFAA-SVARHSEKEWRENSQQIGAELRNVINN 70
                5579*************77.7679****************9988775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.16
     RsbRD_N  28 sagllseaelreqlrellda 47 
                 +a+l+ ++e+ +++++l +a
  EHU01356.1 133 RAKLIARTEVGRAVTALTQA 152
                 23344444444444444443 PP

>> DUF5356  Family of unknown function (DUF5356)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.8e-05      0.23      39      66 ..      43      70 ..      34     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.8e-05
     DUF5356 39 esLqecseaEWdaadeaysaelLNvkkk 66
                 s++  se+EW + ++  +ael Nv ++
  EHU01356.1 43 ASVARHSEKEWRENSQQIGAELRNVINN 70
                588999******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1738.81
//
Query:       EHU01357.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01357.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01357.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01357.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01357.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 802.05
//
Query:       EHU01358.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01358.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 951.72
//
Query:       EHU01359.1  [L=454]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-86  290.3   4.8    5.1e-86  288.6   0.1    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    6.3e-15   55.3   1.3    1.6e-14   54.0   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.3e-11   45.1   9.6    2.8e-11   44.0   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.013   15.3   6.4      0.021   14.6   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.019   15.3   4.6      0.086   13.2   0.8    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.021   14.1   2.0      0.041   13.1   2.0    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   13.3   6.9      0.044   12.3   6.9    1.5  1  FUSC             Fusaric acid resistance protein family
      0.023   14.3   2.0       0.03   13.9   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.042   13.1   0.4       0.07   12.3   0.4    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.048   13.9   3.1      0.087   13.1   3.1    1.4  1  Troponin         Troponin
      0.081   12.6   2.7       0.28   10.9   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.11   12.4   0.7         18    5.3   0.0    3.1  3  UME              UME (NUC010) domain
       0.12   12.1  10.8       0.21   11.4  10.8    1.3  1  ERM              Ezrin/radixin/moesin family
       0.29   11.2  10.9       0.53   10.4  10.9    1.4  1  DHR10            Designed helical repeat protein 10 domain
       0.31   11.1   5.3        2.9    8.0   0.2    2.9  2  DUF1192          Protein of unknown function (DUF1192)
        0.9    8.7   3.1        1.4    8.1   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.1    7.9   7.8        4.8    6.7   7.8    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        2.6    8.4   6.9       0.48   10.8   3.1    1.7  1  HalX             HalX domain
        2.7    8.3   8.0        5.7    7.3   8.0    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        4.6    7.9   8.8        9.8    6.9   1.7    3.2  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.7     0.085        76     167     215 ..      34      83 ..      21     124 .. 0.47
   2 !  288.6   0.1   5.7e-89   5.1e-86       2     258 ..     187     449 ..     186     452 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.085
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU01359.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 288.6 bits;  conditional E-value: 5.7e-89
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01359.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01359.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaE 258
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE
    EHU01359.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAE 449
                   4479*****************************************************************9 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   1.3   1.8e-17   1.6e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01359.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   9.6   3.2e-14   2.8e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01359.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   6.4   2.4e-05     0.021     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.4e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01359.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   9.6e-05     0.086      22      56 ..      23      57 ..      12      73 .. 0.81
   2 ?    3.1   0.5      0.13   1.2e+02      33      53 ..      71      91 ..      67      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.6e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01359.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01359.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.0   4.6e-05     0.041      47     106 ..      34      90 ..      25      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01359.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.9     5e-05     0.044     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01359.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   3.3e-05      0.03     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.1   0.0       1.2   1.1e+03     125     146 ..     351     384 ..     341     437 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01359.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01359.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444443332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   7.8e-05      0.07      24      76 ..      37      91 ..      32     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01359.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1   9.7e-05     0.087      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01359.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00031      0.28     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.9   0.1      0.17   1.5e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01359.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01359.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.6   1.4e+03      26      54 ..      16      44 ..       8      68 .. 0.78
   2 ?    3.4   0.0     0.078        70      15      53 ..      64     102 ..      48     105 .. 0.82
   3 ?    5.3   0.0      0.02        18       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01359.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                78999999999999999999988877655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.078
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01359.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555444.888888899999457**************9 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.02
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01359.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  10.8   0.00023      0.21      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01359.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.9   0.00059      0.53      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00059
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01359.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0032       2.9      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.6   1.2     0.076        68      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0032
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01359.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.076
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01359.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.1    0.0016       1.4      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01359.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.8    0.0054       4.8      70     152 ..      13      97 ..       2     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0054
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01359.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98765 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.1   0.00054      0.48       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00054
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01359.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.0    0.0063       5.7       9      83 ..      14      92 ..      10     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0063
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01359.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                56777778888899999999*********************966655.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.7     0.011       9.8      22      53 ..      12      43 ..       8      65 .. 0.88
   2 ?    2.9   1.4      0.19   1.7e+02      34      57 ..      68      91 ..      49     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01359.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01359.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888999999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      834  (0.0465168); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 3539.15
//
Query:       EHU01360.1  [L=407]
Description: hypothetical protein CKS_4113 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-47  159.9   0.0      1e-46  159.0   0.0    1.5  2  DUF2213   Uncharacterized protein conserved in bacteria (DUF2
     0.0048   17.2   0.6       0.01   16.2   0.6    1.5  1  DUF2277   Uncharacterized conserved protein (DUF2277)


Domain annotation for each model (and alignments):
>> DUF2213  Uncharacterized protein conserved in bacteria (DUF2213)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.0   1.2e-50     1e-46       2     168 .]      14     182 ..      13     182 .. 0.97
   2 ?   -3.8   0.0       1.3   1.1e+04     133     158 ..     349     374 ..     341     377 .. 0.73

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 1.2e-50
     DUF2213   2 sltaeGfLvveavpiaragvqpYlgreipklgldpdriirvlrdpdelfkkealasfegkpvtdeHpee......evtaenwkelavGtv...grdvrf 91 
                  + a+G+L++++vpiar+g q Y ++++p+l++d d+ i v+r+p+e+f++ea+asfeg+ vt+ Hpe+      +v++enw+elavG+v   +r++++
  EHU01360.1  14 YRLADGSLLCKDVPIARTGKQLYGEADFPELEPDGDGEIVVTRTPEEVFSPEAMASFEGMSVTLLHPEDdlgnllFVDPENWRELAVGHVsdvRRGEGE 112
                 5679***************************************************************999********************9999***** PP

     DUF2213  92 egeylvadllitdaeaiaaiesgklrelSagYeadldm.tpgeydGekydavqrnirgnHvAlVeeGRaGpdvaigDs 168
                 ++e l+adl+i+d+ ai+aiesg  re+S+gY+a++ +  pg       +a q +i gnHvAlV++GRaG  ++igDs
  EHU01360.1 113 QSELLLADLIIKDEVAIDAIESGL-REVSCGYDAKYRQeGPG-------NADQHHITGNHVALVPKGRAGIICSIGDS 182
                 ************************.***********998888.......9**************************96 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.3
     DUF2213 133 eydGekydavqrnirgnHvAlVeeGR 158
                 ++d +k++    n+ +n vA +++ R
  EHU01360.1 349 DADVRKMNRSSVNMAFNAVAELAKSR 374
                 55666677777888888888888777 PP

>> DUF2277  Uncharacterized conserved protein (DUF2277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   1.1e-06      0.01       9      57 ..     323     372 ..     319     390 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
     DUF2277   9 rnlePpateeeiraAAlq.yVRKvsGvrkpsaaneeaferAveeiaaate 57 
                 r ++P a + ++ aAA q  VR + G  ++ + n+  ++ A +++a+ ++
  EHU01360.1 323 RSMKPTAFKRDVLAAADQaLVRQIVGDADVRKMNRSSVNMAFNAVAELAK 372
                 5689************9867*********************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3232.41
//
Query:       EHU01361.1  [L=174]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1323.95
//
Query:       EHU01362.1  [L=319]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-78  262.1   0.0    5.9e-78  261.7   0.0    1.1  1  DUF2184   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2184  Uncharacterized protein conserved in bacteria (DUF2184)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.7   0.0   3.3e-82   5.9e-78       4     250 ..      76     318 ..      74     319 .] 0.97

  Alignments for each domain:
  == domain 1  score: 261.7 bits;  conditional E-value: 3.3e-82
     DUF2184   4 kiisnyaddlprvdvdieketakvkligasygytvqElraaqalGrsLdtrkadaarraadkkinkiayvGde...kkgltGLlnspgvtvttaaagat 99 
                 ++is+++++l++v+v+ie+  + ++++g+++g+tv+El+aaq +Gr++dt+k ++++++++++i++++y+Gd+   ++g+ GL+n+pg  + +      
  EHU01362.1  76 NWISQESTALAGVSVNIERSFRALNTWGMELGWTVEELAAAQHVGRPIDTQKHAGMQLKWNMDIDEQVYIGDKtlgANGVPGLVNQPGLNTQA------ 168
                 8************************************************************************555567778*******9998...... PP

     DUF2184 100 gstkWadkTadeiladinaaltavwtasgyveapdtlllppsqyadLatrrvsdtgnktilsflkenniatkqkgrpLtiekvkelegagtggkdrmva 198
                 +++ Wa   +d i +din++l+a+w+ +gy+++p+ lllpp+q+a+La+ +vs++gn+++ls+l +n+ia +q+g+pL+i++vk+l+gag++g+dr+va
  EHU01362.1 169 AAKVWAGGKPDDIRNDINTLLNAAWASTGYAVVPTDLLLPPEQFAYLASVIVSSAGNQSLLSYLSTNTIAYHQNGVPLNIRAVKWLKGAGANGSDRAVA 267
                 6789*********************************************************************************************** PP

     DUF2184 199 YtndpdvvelelpmpltrlpaqkrnlefevpyearlggveirypkaivyvDg 250
                 Yt+d + v++++ +pl+  p+q+r l+++v+y+++lg ve +yp++i+y+Dg
  EHU01362.1 268 YTKDHKFVRFPM-VPLQSIPVQYRGLWQIVTYYGKLGAVEPVYPETIAYLDG 318
                 ************.**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2753.35
//
Query:       EHU01363.1  [L=135]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-30  105.3   0.1    1.8e-30  105.2   0.1    1.0  1  DUF4054   Protein of unknown function (DUF4054)


Domain annotation for each model (and alignments):
>> DUF4054  Protein of unknown function (DUF4054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.1   9.8e-35   1.8e-30       1     106 [.      13     125 ..      13     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 9.8e-35
     DUF4054   1 fralfpef...aavpdaaiqawldlAallvsakrfgk.lreqalallaAHll...aadgraaaaggaggaaagrvtsasvGkvsvsydesaaanasagw 92 
                 fr +fp+f   a++pd++i++ l+lA+ l++++ +g+ l +++ +l++AH+l   aad ra+ +ggagg+++g ++s+sv+kvsvsyd++++ na+ag+
  EHU01363.1  13 FRRDFPQFadeAKFPDTQITFRLTLADRLLNENVTGReLFPYFAELFVAHYLvlfAADRRASLTGGAGGSTNGVQASKSVDKVSVSYDTGSTLNADAGF 111
                 899*********************************99************************************************************* PP

     DUF4054  93 lnqTpYGqeflall 106
                 +n+++YG+ef++l 
  EHU01363.1 112 WNNSRYGAEFWQLM 125
                 ************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1112.67
//
Query:       EHU01364.1  [L=209]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00087   19.2   0.1       0.14   12.0   0.0    2.6  2  Phage_tail_S  Phage virion morphogenesis family


Domain annotation for each model (and alignments):
>> Phage_tail_S  Phage virion morphogenesis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0013        24     103     136 ..      53     120 ..      33     134 .. 0.57
   2 !   12.0   0.0   7.7e-06      0.14      32      90 ..     146     206 ..     128     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0013
  Phage_tail_S 103 HQfGgkag................................rdrvskkgkkvtipaRplL..Glsdede 136
                   H fGg+++                                + + +  + +v++p Rp+L  G+ ++ e
    EHU01364.1  53 HSFGGTIRvpehmttvyrqiaddgsfkrngqfvqqaksnfATQHKVAAYSVQLPPRPFLhmGIAQSRE 120
                   5555544444444444444444444444444444443333222355566889******9555554443 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.7e-06
  Phage_tail_S  32 resqeqrfeaqkdP..dGspwkplkdktlaakkgkikrggkilrklgrlarslkteatsds 90 
                    ++ +++++a ++    G   +pl+++tl+++++++++g k l ++g+l rs+++ + +++
    EHU01364.1 146 NRAGTEAVNAARNVitAGDQLTPLAEATLRDRRSRGRSGTKPLYDTGQLLRSITYVVRDKN 206
                   555566666666655579999*********************************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1694.00
//
Query:       EHU01365.1  [L=129]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1052.90
//
Query:       EHU01366.1  [L=182]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1645.33
//
Query:       EHU01367.1  [L=381]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-123  411.9  11.8   9.9e-101  338.1   6.3    2.0  2  DUF3383   Protein of unknown function (DUF3383)


Domain annotation for each model (and alignments):
>> DUF3383  Protein of unknown function (DUF3383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.2   6.4e-26   1.1e-21       1      84 [.       7      93 ..       7     101 .. 0.93
   2 !  338.1   6.3  5.5e-105  9.9e-101     199     478 .]      99     379 ..      96     379 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 6.4e-26
     DUF3383  1 vsrivnvtvsviaaaaqardLnalll..stnvidpkervrsyssaadVaadfGtaspeyqaAqlyFnqspkpkeLliarwakt.aaa 84
                vs++ +v + +++ aa++r++++ll+  s+ +i  +er+r y+saa ++ dfGt+s+ey aA +yF+qsp+p++++++rwakt aaa
  EHU01367.1  7 VSNVASVDIIMSPRAAAGRNFGSLLIlgSATIIPLTERIRLYTSAASIGTDFGTNSEEYLAAVAYFSQSPTPSQVYVGRWAKTlAAA 93
                79999**********************988788889**********************************************95444 PP

  == domain 2  score: 338.1 bits;  conditional E-value: 5.5e-105
     DUF3383 199 etpaeavaaleavsnnwygltf.adaaltddqllavAawieaqnkkylygattqeaaaldatnttdlasklkalaykrtvlqysstdpyaaasalgraa 296
                 et+++ v+a+  + +nwygl +  da  +dd+ll v a ie+++  +++++tt++++al  t++td+ask+ka++y+rt++qysst++y a sa+gra+
  EHU01367.1  99 ETLLDGVNACLGF-TNWYGLGVtYDADRKDDDLLPVCAAIESSSLSRILAVTTKNTDALLTTVNTDIASKVKAAKYSRTFVQYSSTSNYGAISAFGRAF 196
                 5666666666665.579888776799************************************************************************* PP

     DUF3383 297 svnFnannttitlkFkqepgitaevltstqadaldaknyNyYgnynnntailqeGvlsggkfiDeianedWLknaiqkavfnlLltsptkiPqtdaGea 395
                 +v+Fn+  ttitlkFkqepgit e+lt +qa+aldakn+N+Y++y+n+tailq+Gv+ +g+f+De +++dWL+n++q+++fnlL+ts tk+PqtdaG++
  EHU01367.1 197 TVDFNGFGTTITLKFKQEPGITYESLTPAQAAALDAKNCNVYVYYANDTAILQQGVMGNGDFFDERHGLDWLQNYVQTNLFNLLYTSGTKVPQTDAGNT 295
                 *************************************************************************************************** PP

     DUF3383 396 liaaaiedvidqavnnGliapGvwnsagf.aLsagqkltkGYyvyappiasqsqadreaRksvpiqlaykeagaihsvdisvnv 478
                 +i+a++e+++dqavnnGliapGvwn+  + +Ls g++ltkGYyv +p+i+sq+qadreaRksvp+q+a+k+agaih +++ +nv
  EHU01367.1 296 RIMANVEASMDQAVNNGLIAPGVWNGGQIgQLSPGDTLTKGYYVFMPAISSQAQADREARKSVPVQVACKLAGAIHYASVQINV 379
                 ********************************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3175.28
//
Query:       EHU01368.1  [L=147]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-66  220.5   1.4    8.1e-66  220.3   1.4    1.0  1  DUF3277          Protein of unknown function (DUF3277)
  ------ inclusion threshold ------
      0.094   12.2   0.0       0.12   11.9   0.0    1.1  1  Methyltrn_RNA_3  Putative RNA methyltransferase


Domain annotation for each model (and alignments):
>> DUF3277  Protein of unknown function (DUF3277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   1.4   9.1e-70   8.1e-66       3     144 .]       4     145 ..       1     145 [. 0.99

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 9.1e-70
     DUF3277   3 tYsFldvsativgpggsfslgsgagvaeeGitvsksedkntmtvgaDGevmhslhagksGtitirllktspvnkkLqalynaqslssaewgsnvitirn 101
                  YsF+d+sa+++gp+g+++lg+g+++++eGi+v++se kntmt+gaDGevmhslhagk Gt+t++l+ktspvnkkL+ +ynaqslssa+wg+nvi++rn
  EHU01368.1   4 AYSFMDISASLTGPTGVIDLGYGSANSDEGIVVTMSEAKNTMTIGADGEVMHSLHAGKGGTVTVNLQKTSPVNKKLSLMYNAQSLSSALWGNNVIVLRN 102
                 6************************************************************************************************** PP

     DUF3277 102 taagdvivarsvafrkePdevyakegnrveWvfdcvkidellG 144
                 +a+gd+++ar +af+k+Pd+++ k  ++v+Wvfd++kide+lG
  EHU01368.1 103 KASGDIVTARACAFQKQPDWNNPKVAGNVSWVFDAGKIDEILG 145
                 ******************************************8 PP

>> Methyltrn_RNA_3  Putative RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.3e-05      0.12     107     182 ..      31     100 ..      25     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.3e-05
  Methyltrn_RNA_3 107 reGvvvekskekkskkklVniGlkkevklelkqevpegtRVtVklsseesveakvVspsepreeaglywGYsVrla 182
                       eG+vv++s+ k+       iG + ev  +l  +  +g  VtV+l+++++v++k+    ++++ + + wG +V + 
       EHU01368.1  31 DEGIVVTMSEAKN----TMTIGADGEVMHSL--HAGKGGTVTVNLQKTSPVNKKLSLMYNAQSLSSALWGNNVIVL 100
                      69******88554....699**999996666..889999***************9999999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1164.13
//
Query:       EHU01369.1  [L=69]
Description: hypothetical protein CKS_4122 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.12   12.2   0.0    1.1  1  Cas9_b_hairpin  CRISPR-associated endonuclease Cas9 beta-hair


Domain annotation for each model (and alignments):
>> Cas9_b_hairpin  CRISPR-associated endonuclease Cas9 beta-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.8e-06      0.12      24      56 ..      16      48 ..       6      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-06
  Cas9_b_hairpin 24 eidrAstpaLwcALtrlpdfdekeGLPenesRe 56
                    ++ +A  + +  A+tr  ++  ++GLP+++ Re
      EHU01369.1 16 DVVHAILNDVLPAVTRVTEHYVQKGLPADAVRE 48
                    566777778889*****************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 571.51
//
Query:       EHU01370.1  [L=140]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1104.34
//
Query:       EHU01371.1  [L=50]
Description: hypothetical protein CKS_4124 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.071   13.3   0.0      0.071   13.3   0.0    1.1  1  CUT       CUT domain


Domain annotation for each model (and alignments):
>> CUT  CUT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     4e-06     0.071      58      78 ..      22      42 ..       3      43 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4e-06
         CUT 58 evyirmqnwLnlpeserdeil 78
                + ++rm++wL+l+ +++++i+
  EHU01371.1 22 ADFARMNDWLDLKADNEARIA 42
                46**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 361.68
//
Query:       EHU01372.1  [L=680]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.14   11.8  13.4       0.49   10.0   3.1    4.6  4  TMP_2          Prophage tail length tape measure protein


Domain annotation for each model (and alignments):
>> TMP_2  Prophage tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.1   2.8e-05      0.49      72     140 ..      31     103 ..      13     113 .. 0.88
   2 ?    0.7   0.7      0.02   3.6e+02      99     145 ..     164     211 ..     149     230 .. 0.54
   3 ?    1.5   0.0     0.011     2e+02      47      93 ..     290     337 ..     281     342 .. 0.80
   4 ?    1.9   0.0    0.0084   1.5e+02     142     179 ..     558     595 ..     542     610 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.8e-05
       TMP_2  72 Pltla....AaavgalalAyykgakearefnkaliltGnaaGlTasqLeamaesiaeaggtqaaaaealaala 140
                  +tl     +aav a+al ++ ++++  +    l+  ++ +G+T++ ++++  ++++ ggt+  a+++l  la
  EHU01372.1  31 NTTLQavklGAAVEAAALSVVAYTAKIASGLDNLYWASQRTGATVAGIQQIGFAVSQLGGTVDGARSSLESLA 103
                 44444555688999999999999999999999************************************99887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.02
       TMP_2  99 kaliltGnaaGlTasqLeamaesiaeagg.tqaaaaealaalastGki 145
                 ++l+ + + +G+ ++q ++ma++i  ++     +    ++ l s G++
  EHU01372.1 164 NTLMAMRRGVGQFSAQYTQMAKAIGYNADtAAVRSNRFMTSLRSFGEM 211
                 455555555555566666666666555552223333333433333333 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.011
       TMP_2  47 QikdmFGGigpalkalggyvl.slisPltlaAaavgalalAyykgake 93 
                 Q+  + GG+  a k l  + + s i  ++++A+a++ l+  y+ +++ 
  EHU01372.1 290 QVIASIGGLIVAWKLLNTVFMsSPIGRVMMLAGAIALLVEDYLTWKEG 337
                 8899999999999999766551457777777*******9999988876 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.0084
       TMP_2 142 tGkiggeqlervakaaaelekatGqsvdetakelakla 179
                 tGk++g++l+ ++ ++ +++     ++ +++++++k +
  EHU01372.1 558 TGKTTGKALQTITDIVSTWAPSSENDTGKYISDISKWM 595
                 89999999999999999998888888888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5053.29
//
Query:       EHU01373.1  [L=202]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1504.02
//
Query:       EHU01374.1  [L=100]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 752.34
//
Query:       EHU01375.1  [L=355]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 3059.25
//
Query:       EHU01376.1  [L=49]
Description: putative secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 355.70
//
Query:       EHU01377.1  [L=70]
Description: hypothetical protein CKS_4130 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 611.19
//
Query:       EHU01378.1  [L=137]
Description: hypothetical protein CKS_4131 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0003   19.8   0.1    0.00034   19.6   0.1    1.0  1  Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
     0.0022   18.5   1.4     0.0027   18.3   1.4    1.1  1  APG6_N      Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.024   14.8   2.1      0.037   14.2   2.1    1.2  1  Cnn_1N      Centrosomin N-terminal motif 1
      0.025   14.6   0.4      0.032   14.3   0.4    1.2  1  Eapp_C      E2F-associated phosphoprotein
       0.04   13.8   0.7      0.051   13.4   0.7    1.0  1  SKA1        Spindle and kinetochore-associated protein 1
      0.044   13.6   5.1      0.049   13.4   4.0    1.6  1  DivIC       Septum formation initiator
      0.045   13.3   0.1       0.05   13.1   0.1    1.1  1  DUF2381     Protein of unknown function (DUF2381)
      0.047   14.1   1.0      0.057   13.8   1.0    1.1  1  CENP-H      Centromere protein H (CENP-H)
       0.08   13.2   0.6       0.12   12.7   0.6    1.3  1  Mto2_bdg    Micro-tubular organiser Mto1 C-term Mto2-binding 
       0.32   10.6   0.1       0.32   10.6   0.1    1.9  2  Sgf11       Sgf11 (transcriptional regulation protein)
        0.4   10.8   4.0        0.5   10.5   2.0    1.9  2  bZIP_2      Basic region leucine zipper
        3.5    6.6   6.1        1.3    8.1   1.4    2.0  2  Atg14       Vacuolar sorting 38 and autophagy-related subunit


Domain annotation for each model (and alignments):
>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   2.3e-07   0.00034     173     241 ..      23      87 ..      16     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.3e-07
  Fmp27_WPPW 173 kelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkesee 241
                  e+l+eR++ + eqie ++++ e+++++  +    lk++  elekei+ ++ k ef++++   ++++++
  EHU01378.1  23 NEVLRERIAFIYEQIEVIQKASESAQKELAQ----LKAKNIELEKEIAAYRAKDEFVQHMGAAFRKNTS 87 
                 5799************************999....9*************************99999876 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.4   1.8e-06    0.0027      45      94 ..      26      75 ..       7      89 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
      APG6_N 45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeeleal 94
                 +e ++ + e++e ++k+ e++++eL++l++++ ele+e+aa++++ e +
  EHU01378.1 26 LRERIAFIYEQIEVIQKASESAQKELAQLKAKNIELEKEIAAYRAKDEFV 75
                345777788899******************************99987755 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.1   2.5e-05     0.037      19      64 ..      26      70 ..      20      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
      Cnn_1N 19 LKLriyfLeerleklseeqkeellkenielkveveslqkelkekkk 64
                L+ ri+f  e++e +++  +e++ ke+ +lk ++ +l+ke+ +++ 
  EHU01378.1 26 LRERIAFIYEQIEVIQK-ASESAQKELAQLKAKNIELEKEIAAYRA 70
                6669***********99.9**********************99985 PP

>> Eapp_C  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.4   2.1e-05     0.032      66     142 ..      37     113 ..      20     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
      Eapp_C  66 vkvdkeevlkykeaesekkkkkkkkskkkeekeeeaeaeeaeeeeeeeeeeeesyhpvkCseCstevavldkdevyh 142
                 ++v ++ + + +++ ++ k k+ + +k+ ++ ++++e  ++   + +++++ e +++v C +C ++v+  d d  +h
  EHU01378.1  37 IEVIQKASESAQKELAQLKAKNIELEKEIAAYRAKDEFVQHMGAAFRKNTSGEYVKAVYCPNCLKQVGSGDIDFPFH 113
                 444444444455455556666666666666666666666666666667777******************99998887 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   3.4e-05     0.051       2      77 ..       7      82 ..       7      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
                XXXXXX................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX CS
        SKA1  2 iselrelvslrainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenl 77
                is+++ +v + ++ q++++l+e +  i ++++ +++  ++ +kel++ +  + +l+kei a + ++e +qh+ +  
  EHU01378.1  7 ISSVKSAVGALSTIQTNEVLRERIAFIYEQIEVIQKASESAQKELAQLKAKNIELEKEIAAYRAKDEFVQHMGAAF 82
                78899999999999*************************************************99999***97665 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.0   3.2e-05     0.049      25      57 ..      43      75 ..      30      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.2e-05
                HHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS
       DivIC 25 eiaalqaelaklkaeneeLeaevkdLksdedyi 57
                  +  q+ela+lka+n eLe+e++ ++  ++++
  EHU01378.1 43 ASESAQKELAQLKAKNIELEKEIAAYRAKDEFV 75
                456789********************9888887 PP

>> DUF2381  Protein of unknown function (DUF2381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.4e-05      0.05     119     175 ..      36      89 ..      25     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
     DUF2381 119 qVeVsRrarsaealqaelaelrarnealeeelerlraarsaarglaglvlsgllgee 175
                 q+eV   +++ e+ q+ela+l+a+n +le+e +++r a+ +  + +g+++ +  + e
  EHU01378.1  36 QIEV--IQKASESAQKELAQLKAKNIELEKEIAAYR-AKDEFVQHMGAAFRKNTSGE 89 
                 8888..56678999**********************.66666666666665555555 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   3.8e-05     0.057       3      57 ..      18      73 ..      16      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-05
      CENP-H  3 plieqrdelssellklsqelrelqeeltevekenlrlkrknrelaael.lelakek 57
                 +i+ ++ l ++++ + ++++ +q++ ++++ke  +lk+kn el +e+ +  ak++
  EHU01378.1 18 STIQTNEVLRERIAFIYEQIEVIQKASESAQKELAQLKAKNIELEKEIaAYRAKDE 73
                67888999999999999999999999999999999999999999999944666554 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   8.2e-05      0.12      24      49 ..      44      69 ..      35      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-05
    Mto2_bdg 24 rsgarerLeelkaeNrlLkaeLerdr 49
                 ++a+++L++lka+N +L+ e++  r
  EHU01378.1 44 SESAQKELAQLKAKNIELEKEIAAYR 69
                579*****************998766 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00021      0.32       3      16 ..      92     105 ..      90     106 .. 0.84
   2 ?   -3.2   0.8       4.3   6.4e+03       5      10 ..     112     117 ..     112     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
                 -EEE-TTTSSEEEG CS
       Sgf11   3 eyvtCpnCgRqiaa 16 
                 + v CpnC +q+ +
  EHU01378.1  92 KAVYCPNCLKQVGS 105
                 5799*******976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.3
                 EE-TTT CS
       Sgf11   5 vtCpnC 10 
                 ++C  C
  EHU01378.1 112 FHCGTC 117
                 799999 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.56   8.4e+02      35      49 ..      24      38 ..      18      45 .. 0.62
   2 ?   10.5   2.0   0.00033       0.5      27      52 ..      44      69 ..      40      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.56
                HHHHHHHHHHHHHHH CS
      bZIP_2 35 keLeeeNaqLrqkve 49
                + L+e++a++ +++e
  EHU01378.1 24 EVLRERIAFIYEQIE 38
                345555555555555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00033
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 27 eeeleervkeLeeeNaqLrqkveqLe 52
                 e+ ++++ +L+++N +L++++++++
  EHU01378.1 44 SESAQKELAQLKAKNIELEKEIAAYR 69
                68899*****************9987 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.4   0.00086       1.3      48     103 ..      16      71 ..       8      77 .. 0.81
   2 ?    0.9   0.2      0.13   1.9e+02       9      19 ..      92     102 ..      84     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00086
       Atg14  48 alegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkk 103
                 al++ + +e l+++i    +++e +++ +++ +++l++lk+k  +l kei++ ++k
  EHU01378.1  16 ALSTIQTNEVLRERIAFIYEQIEVIQKASESAQKELAQLKAKNIELEKEIAAYRAK 71 
                 56666667788888888889999999999999999999999999999999988876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
       Atg14   9 rpfiCesClrn 19 
                 +  +C++Cl++
  EHU01378.1  92 KAVYCPNCLKQ 102
                 56788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1557  (0.0868425); expected 358.6 (0.02)
Passed bias filter:                      980  (0.05466); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1071.39
//
Query:       EHU01379.1  [L=218]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-44  149.5   0.1    6.7e-44  148.0   0.0    1.8  2  Gp138_N   Phage protein Gp138 N-terminal domain


Domain annotation for each model (and alignments):
>> Gp138_N  Phage protein Gp138 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.0   3.7e-48   6.7e-44       1      98 []      31     132 ..      31     132 .. 0.98
   2 ?   -1.5   0.0      0.15   2.7e+03      43      55 ..     161     173 ..     142     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 148.0 bits;  conditional E-value: 3.7e-48
     Gp138_N   1 lPgkivsfdpaavtatvqpaikkklsdg....etvelpllvdvpvvfprgggvtltfpvkaGdeclvvfseraidawlqsGgvqepaderlhdlsdafa 95 
                 lPg+++sfdp++vta++qpai++ ++d+    +t ++pll+dvpv+fprggg+t+tfpvkaGdeclvvfs+r+id+w+q+Ggvqep+d r+hdlsdafa
  EHU01379.1  31 LPGIVQSFDPNTVTAVIQPAIRYIERDSngneSTHDYPLLMDVPVYFPRGGGCTITFPVKAGDECLVVFSDRCIDFWWQNGGVQEPVDPRQHDLSDAFA 129
                 8**********************9999888999****************************************************************** PP

     Gp138_N  96 ivG 98 
                 ++G
  EHU01379.1 130 FIG 132
                 *98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
     Gp138_N  43 fprgggvtltfpv 55 
                  ++gg+v +t p+
  EHU01379.1 161 LMQGGNVNITTPL 173
                 4578888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1616.52
//
Query:       EHU01380.1  [L=117]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 867.16
//
Query:       EHU01381.1  [L=399]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-18   67.1   8.2    1.6e-18   66.8   6.4    1.8  2  Baseplate_J  Baseplate J-like protein
  ------ inclusion threshold ------
       0.03   14.1   0.2      0.057   13.2   0.2    1.4  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.094   8.4e+02     221     249 ..      19      47 ..       5      49 .. 0.73
   2 !   66.8   6.4   1.8e-22   1.6e-18       5     252 ..      86     342 ..      83     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.094
  Baseplate_J 221 dseavkqaveaaiqayfkeeakpggtivl 249
                   s+ + q + +ai+ yf+++  +++++ +
   EHU01381.1  19 ISAPAYQTILTAITGYFQQIYGTDAYLDP 47 
                  44677789999******999988888776 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 1.8e-22
  Baseplate_J   5 LdrlgelevgvtRkpAtkAsgtvtftgeagtvIpaGtrvstadglsfattedtitagqgsatvkvtaeeaGaagNvpagtsllldtaiagiqsvavan 102
                  L r +++  g+tR+pAt +++ +t  g+agt+I +G++  + +g+ + + +  ++  +g++  + t+ +aGa +   ag++ ++ t++ g  sv++a+
   EHU01381.1  86 LSRNVKI-NGITRRPATNSTTDLTLGGAAGTTITNGSVKDA-NGIIWNLPASITIGPDGTVIATGTCAVAGAVAA-VAGSVNKINTPTRGWLSVTNAS 180
                  7777888.5***************************98887.*********99999*****************97.677788999************9 PP

  Baseplate_J 103 tkvssgGadiEsdealreRillalqepptgGnkadYkewalevqgVtrakvlplwngpGtVkvvilldng..glPtaellakVqayisegl....... 191
                  +   + G  +E+d++lr R ++++  p+   + ++   ++ +++gVtr k +++   +G+V+   l +     + ++ +++++++ i +g+       
   EHU01381.1 181 AA--TVGSAAEKDSELRIRQRQSVALPSL-TPFEALDGAVASITGVTRHKLYEN--DTGNVDANGLPAHSiaAIVDGGDVNTIAKVI-QGKkgqgvat 272
                  77..********************76666.9***********************..67888887666554559**************.4444568899 PP

  Baseplate_J 192 .............rPvtaevtvlaptekavnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqi 252
                                P t  ++  ap+++ v+i ++++   g++ ++v +++++ai+ay+ +++  g++++ls++
   EHU01381.1 273 fgstavsvqdswgNPHTISFSRPAPVPVFVAIVLKVFT--GYT-TQVGNDIKTAIAAYINSLNI-GDDLLLSRV 342
                  9999999999999**********************733..677.99999************888.******997 PP

>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   6.4e-06     0.057      75      98 ..     143     166 ..     115     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.4e-06
                  EEEEESHHHHH-TGGGSTT-TEE- CS
  Oxidored_q6  75 aviavGtCAafGGipaaannpsvg 98 
                  +via GtCA+ G + a a++++++
   EHU01381.1 143 TVIATGTCAVAGAVAAVAGSVNKI 166
                  79**************99977553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2938.37
//
Query:       EHU01382.1  [L=226]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-53  180.8   1.3    8.6e-50  169.2   0.0    2.0  2  DUF2612   Protein of unknown function (DUF2612)


Domain annotation for each model (and alignments):
>> DUF2612  Protein of unknown function (DUF2612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.0   4.8e-54   8.6e-50       1     178 [.       4     186 ..       4     189 .. 0.94
   2 !   10.9   0.5   1.8e-05      0.32      59      88 ..     192     224 ..     187     226 .] 0.84

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 4.8e-54
     DUF2612   1 ylqlilsqyankpklvalvealnqplsdaafiadfladvfdldtAegkgLDvwGrivgvsrvltvplskkyfgFdeaglgFdqgsfkrrsdsttgltsL 99 
                 y +li+ +++ kp ++++v++ ++pl+daa +++ l  +fd+d+A+g +LD++G+++g+sr+++vp+s++yf+Fd++glg+dqg +++++d+++g+t+L
  EHU01382.1   4 YSDLITNYHRTKPLFTQHVDLSTRPLTDAASAMEGLLTAFDIDQAVGAQLDILGEWIGRSRTVSVPISGVYFSFDTDGLGWDQGIWQGPYDPDSGYTAL 102
                 789************************************************************************************************ PP

     DUF2612 100 ddetyRklirakilaniwdgtvpninailrslfad.ggrvfvlDngdmtmtvyvf.efq...ptavelaiiensdllprpaGVa 178
                 +detyR +++aki+ n+wdgt  +++ il++ +a+ g ++ ++D +dmt+  +vf e+    ++  ++a+i++++l +++aGV 
  EHU01382.1 103 SDETYRIILKAKIAINNWDGTNGSLKGILDNALAGsGLTMQIVDGQDMTVGLWVFpEKDitlVSRELIAAIRQGYLTVKAAGVY 186
                 *******************************9999999***************9944442223444678899**********96 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 1.8e-05
     DUF2612  59 vsrvltvplskkyfgFdeag...lgFdqgsfkr 88 
                 ++ v+t ++ +++fgFd ++    gFd+gs+ +
  EHU01382.1 192 IPSVITPSEGNTFFGFDMDNqfiSGFDSGSWEK 224
                 566677777779*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1735.44
//
Query:       EHU01383.1  [L=263]
Description: putative bacteriophage tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2131.43
//
Query:       EHU01384.1  [L=51]
Description: hypothetical protein CKS_4137 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-13   48.5   0.2      1e-12   48.3   0.2    1.0  1  Caudo_TAP       Caudovirales tail fibre assembly protein, lam
  ------ inclusion threshold ------
       0.15   11.9   0.7       0.17   11.7   0.3    1.4  1  Phage_tail_APC  Phage tail assembly chaperone protein


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.2   1.2e-16     1e-12      84     129 ..       5      50 ..       2      51 .] 0.95

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.2e-16
   Caudo_TAP  84 plqdavdlgiatdeEkaaLlawkkYrvlLnrvDvslapdieWPeqP 129
                 ++  +++lg++  +E aa++ w +Y+++L +vD+s+apdi+WP +P
  EHU01384.1   5 QWPGKAALGRLKGDELAAYNTWLDYLDALYAVDTSKAPDITWPVKP 50 
                 688899***************************************9 PP

>> Phage_tail_APC  Phage tail assembly chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   1.9e-05      0.17      29      60 .]      22      51 .]       8      51 .] 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                    HHHHHHHHHHHHHHS---SS--S--------- CS
  Phage_tail_APC 29 erqalkaYrqaLRDlPeqegfPaaveWPeePe 60
                    ++ ++ +Y+ aL  +      P +++WP++P+
      EHU01384.1 22 AYNTWLDYLDALYAVDTS-KAP-DITWPVKPT 51
                    3899********999765.678.9******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 486.92
//
Query:       EHU01385.1  [L=70]
Description: hypothetical protein CKS_4138 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   13.7   0.7       0.07   13.1   0.7    1.3  1  DUF2116   Uncharacterized protein containing a Zn-ribbon (DUF
       0.13   11.7   0.2       0.13   11.7   0.2    1.7  2  zf-FLZ    zinc-finger of the FCS-type, C2-C2


Domain annotation for each model (and alignments):
>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   7.8e-06      0.07       6      37 ..      33      65 ..      28      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.8e-06
     DUF2116  6 CivCG.kaIpldesfCsekCqeeyekkrkkvar 37
                Ci C  +++  +  fCs +C   y k+ + +++
  EHU01385.1 33 CIWCKdEPVVDKTAFCSADCGVDYFKHEREMKQ 65
                9999537999999***********999888654 PP

>> zf-FLZ  zinc-finger of the FCS-type, C2-C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.22     2e+03      15      21 ..      32      38 ..      31      39 .. 0.79
   2 ?   11.7   0.2   1.5e-05      0.13      35      52 ..      44      61 ..      42      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.22
      zf-FLZ 15 aCflCkk 21
                +C  Ck 
  EHU01385.1 32 KCIWCKD 38
                6999985 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.5e-05
      zf-FLZ 35 dkaFCSeeCRqqqielde 52
                ++aFCS++C  +  +++ 
  EHU01385.1 44 KTAFCSADCGVDYFKHER 61
                58*******887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 680.69
//
Query:       EHU01386.1  [L=82]
Description: putative DNA damage-inducible protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-18   66.1   0.2    3.5e-18   65.7   0.2    1.1  1  DinI      DinI-like family
  ------ inclusion threshold ------
      0.091   12.7   0.0       0.13   12.2   0.0    1.3  1  DUF4994   Domain of unknown function


Domain annotation for each model (and alignments):
>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.2   3.8e-22   3.5e-18       1      63 []      16      80 ..      16      80 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 3.8e-22
                -TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES.--HH.HHHHHHHHHHHHHHTHHHH- CS
        DinI  1 pagaiealeaELskRiqevfPdaevrvrkasanglsveG.aske.dkeriseiLQetwesADdWl 63
                p+g ++al+ EL kR+ +++ d ev v+ as++glsv++ ++ke dk  +++++Qe wesAD+W+
  EHU01386.1 16 PKGSVDALRDELIKRLGKKYGDLEVIVKSASNDGLSVRRsQDKEgDKAHVEKVVQEAWESADEWF 80
                8999***********************************966655*******************8 PP

>> DUF4994  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.13       1      42 [.      15      56 ..      15      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
     DUF4994  1 lPkgeapDSenvlkallGkdkkdReyvieqaanktlsvrkkk 42
                +Pkg+    ++ l   lGk+  d e+++++a+n  lsvr+ +
  EHU01386.1 15 MPKGSVDALRDELIKRLGKKYGDLEVIVKSASNDGLSVRRSQ 56
                688888888999999***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 674.05
//
Query:       EHU01387.1  [L=121]
Description: hypothetical protein CKS_4140 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0019   18.1   0.0      0.009   16.0   0.0    1.8  2  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.037   6.7e+02      44      64 ..      19      39 ..      10      42 .. 0.81
   2 !   16.0   0.0     5e-07     0.009       9      39 ..      40      70 ..      39      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.037
                   EEEEEETTEEEEE.SSTTSTE CS
  Peptidase_S24 44 Krviglpgdrvllasnneypp 64
                   K+++++p  ++ ++++ +yp+
     EHU01387.1 19 KQLVRHPQATFFIKADAQYPE 39
                   999999999999999877775 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5e-07
                   CTXXTTXEEEEECTS---TTSEEEEEETTCE CS
  Peptidase_S24  9 ptlldGdlilVdkfsepkrGdivvfrlpgee 39
                    ++l G +++Vd +++p +G +vv+  ++e 
     EHU01387.1 40 QGILKGAMLVVDSSVKPVHGSLVVASPEDEM 70
                   6899*********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1078.25
//
Query:       EHU01388.1  [L=48]
Description: TetR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-15   57.1   0.1    1.9e-15   57.1   0.1    1.0  1  TetR_C_3  YcdC-like protein, C-terminal region


Domain annotation for each model (and alignments):
>> TetR_C_3  YcdC-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1     1e-19   1.9e-15      96     142 ..       1      47 [.       1      48 [] 0.97

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1e-19
                 HHHHHHHHHHHTHHHHHHHHS--TTSHHHHHHHHHHHHHHHHHHHS- CS
    TetR_C_3  96 siWalTqhYadfdvQveavtgkekldesdfdeaaetvtrlvlkgiep 142
                 ++Wa+TqhYadf+ Qvea+tg++ ++  +f+e++e+v+r++++gi+ 
  EHU01388.1   1 MLWATTQHYADFASQVEAITGNQLSNPVFFEETVENVQRIIIEGIRV 47 
                 69******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 396.72
//
Query:       EHU01389.1  [L=301]
Description: hypothetical protein CKS_4142 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-23   83.2  11.7    1.3e-23   83.2  11.7    1.5  2  YdjM      LexA-binding, inner membrane-associated putative hy
  ------ inclusion threshold ------
      0.085   12.5   0.1      0.085   12.5   0.1    2.2  2  DUF4131   Domain of unknown function (DUF4131)
       0.18   11.1   2.0        1.3    8.3   0.0    2.2  2  YhfC      YhfC intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> YdjM  LexA-binding, inner membrane-associated putative hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2  11.7   2.2e-27   1.3e-23       1     172 [.       1     178 [.       1     179 [. 0.92
   2 ?   -3.3   0.1      0.78   4.6e+03     120     130 ..     243     253 ..     238     265 .. 0.73

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.2e-27
        YdjM   1 MdgltHallGaalglalaallgaakeavllavavlgAllPDiDhpsstlgrklgllskklaklvgHRgftHSllflallalvlllllrlfgrsa...lr 96 
                 Md+ ++ +lGa ++la++ +  +a+  ++ av+++ ++lPD+D + +  g+++++++        HR+ +H ll l l++ +l++l++++++s    l 
  EHU01389.1   1 MDSVSQCVLGASVALAVMGRRVPAW--QAAAVGAISGTLPDLD-VFIDHGDAIRNMTL-------HRTESHALLYLTLCSPLLAALVARLFKSGvtwLA 89 
                 9999******************995..899*************.99************.......***************9999999999988755455 PP

        YdjM  97 lglllllgvlsHlllDlltkyGvpllwPfskkkvrlsllfiiidplltll..............srrglvalelvllvlylviilvarei 172
                 ++ +++l++++H+llDl+t yG++l +P++++ +++++  i +dpl+tl+              ++ ++ ++ l+l+  yl++++v++++
  EHU01389.1  90 WWPAIWLALITHPLLDLMTVYGTQLGLPLTDHPYAIGSMYI-VDPLYTLPliiglcvalwrrnrRGLRWNHAGLALSTGYLAWSMVIQQV 178
                 55669999***********************9999999999.*******************99999999999999999999999998875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.78
        YdjM 120 pllwPfskkkv 130
                 +l+ Pf++++ 
  EHU01389.1 243 ELFVPFKGNWL 253
                 78999987654 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.8      0.12   6.9e+02       8      36 ..      66      98 ..      59     122 .. 0.64
   2 ?   12.5   0.1   1.4e-05     0.085      13      79 ..     137     201 ..     133     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
     DUF4131  8 vllalllllllllllllrr....rprrrvllll 36
                ++l++ ll++l++ l++      ++++ ++l+l
  EHU01389.1 66 LTLCSPLLAALVARLFKSGvtwlAWWPAIWLAL 98
                444555555555555443344444444444444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.4e-05
     DUF4131  13 llllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvaslp 79 
                 l l++ l+++l+rr++r  ++ +++l+l ++ l +    +q + +++ + le +q v+ + +v+ +p
  EHU01389.1 137 LPLIIGLCVALWRRNRRGLRWNHAGLALSTGYLAWSMVIQQVADEHIKHSLE-QQGVA-TDKVLVTP 201
                 566677777777779999*********************************8.55554.55665555 PP

>> YhfC  YhfC intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5     0.018   1.1e+02     187     207 ..      90     110 ..      54     119 .. 0.77
   2 ?    8.3   0.0   0.00022       1.3       4      63 ..     140     204 ..     136     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.018
        YhfC 187 rvlllllaillhaliDllaal 207
                 ++  ++la + h+l+Dl+ ++
  EHU01389.1  90 WWPAIWLALITHPLLDLMTVY 110
                 677799***********8654 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00022
        YhfC   4 llpiglvvwlrkklklslkvvgl....GalvF.alfalvlerplhlallkqneatakalsapllf 63 
                 ++++ +++w r + +l +  +gl    G l++ ++ ++v +  ++  l +q  at k+l  p +f
  EHU01389.1 140 IIGLCVALWRRNRRGLRWNHAGLalstGYLAWsMVIQQVADEHIKHSLEQQGVATDKVLVTPTAF 204
                 45566888999999999999886556699999445677*****************9999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2388.05
//
Query:       EHU01390.1  [L=464]
Description: D-alanine/D-serine/glycine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-111  373.2  51.3   1.9e-111  373.0  51.3    1.0  1  AA_permease    Amino acid permease
    1.6e-42  145.9  56.9    2.2e-42  145.4  56.9    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.0  51.3  2.1e-115  1.9e-111       1     473 [.      26     463 ..      26     464 .] 0.98

  Alignments for each domain:
  == domain 1  score: 373.0 bits;  conditional E-value: 2.1e-115
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+gg+iGtglf+g+g+++s aGp +++ +y+++g+++f+vm+++ge+   + +  +f+ +a++ lgp++G+++G+ y+f+w+++ +++++a+s
   EHU01390.1  26 HIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFAADLLGPWAGYFTGWTYWFCWVVTGIADVVAIS 122
                  9***************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga...gfrflgdngsifknnlppgfake 193
                   ++q+w  ++  + +w+ +++ ++v+l++n++ vk++ge+ef++a+iki+ai+a+ii gi+l++   p++g     +++++d+g+     +p+g    
   EHU01390.1 123 AYFQLW--FPGFS-IWMSALLCVFVFLALNIATVKLFGEMEFWFAIIKIVAIVALIITGIVLVSIHYPSPGGgtaALSNIWDHGG----LFPKG---- 209
                  ******..*****.*********************************************999999999999988899********....99999.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapl 291
                      +++f+++f+i+vfaf Gielv+++a+E+ dP + +P+ai+ + +r+++fYvl+ll+i+++ p++            spfv +++  g++++a++
   EHU01390.1 210 ----LSGFFAGFQIAVFAFVGIELVGTAAAETHDPHRVLPRAINAIPLRVIMFYVLALLVIMSITPWTEVMADR------SPFVEMFVLIGLPAAASI 297
                  ....*****************************************************************88887......9***************** PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                  +n+v+lt+a ssans+++s+sR+ly l+++g+a + ++++s r vP  ++++s+++ l ++ l +l +++ +vf+ + ++sa+ +++vw++i++syl 
   EHU01390.1 298 VNFVVLTSAASSANSGIFSTSRMLYGLSQQGVASRAFGRLSSRAVPTTGLFFSCFCLLCGVALIYLIPNVMTVFTLVTTVSAILFMFVWTIILCSYLA 395
                  ************************************************************************************************** PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  +Rk++ ++      + fk++l+ ++++ ++a++++il++l+l   ++              a+ ++ l+f+++  g++l+ +++
   EHU01390.1 396 YRKKFPERHA---ASTFKMPLGKFMCWACMAFFVFILVLLTLQEDTR-------------QALMVTPLWFILLAAGWQLRRRTR 463
                  ****766665...89********************************.............9999*********99999999886 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4  56.9   2.4e-46   2.2e-42       8     418 ..      29     445 ..      26     454 .. 0.83

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 2.4e-46
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl..ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsva 99 
                    +++ig +ig+g f+ +   +  +gp++i++++i+ ++++  v+ ++ El  s+     +  + +++ + g++++++++w++wf++v++  +  +va
     EHU01390.1  29 LIAIGGAIGTGLFMGSgkTISLAGPSIIFVYMIIGFMLF-FVMRAMGELllSN--LEYKSFSDFAADLLGPWAGYFTGWTYWFCWVVTG-IADVVA 120
                    589************9987777***************95.6777999998788..66677999************************98.555666 PP

  AA_permease_2 100 asyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdt..ffpngw 187
                    +s++ ++++p +        + a +++ ++ ++ni  +k  + + ++ +i+ki + ++ lii+g+++v++++ s        s+++d    fp g 
     EHU01390.1 121 ISAYFQLWFPGFSI-----WMSALLCVFVFLALNIATVKLFGEMEFWFAIIKI-VAIVALIITGIVLVSIHYPSPGggtaalSNIWDHggLFPKGL 210
                    66666668887744.....3556799***************************.69999999********99985566555533332244777777 PP

  AA_permease_2 188 pgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilia 281
                    +g+++g+ i++++f+G+e +   + e  ++++ +p+ai+ + l v+++y+l  ++++ + p+ e+   +++  ++  +f   g +++a+iv++++ 
     EHU01390.1 211 SGFFAGFQIAVFAFVGIELVGTAAAEthDPHRVLPRAINAIPLRVIMFYVLALLVIMSITPWTEVMA-DRS--PFVEMFVLIGLPAAASIVNFVVL 303
                    789***********************87888*******************************88765.443..47788888899************ PP

  AA_permease_2 282 lsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllliigalilrkk 375
                     s++ ++n+ ++++sr+l+ l+++gv  r f + + +  p+ ++++++ + l  + l++l++   + ++++++vs+++++++++++++++l +rkk
     EHU01390.1 304 TSAASSANSGIFSTSRMLYGLSQQGVASRAFGRLSSRAVPTTGLFFSCFCLLCGVALIYLIPnvMTVFTLVTTVSAILFMFVWTIILCSYLAYRKK 399
                    ************************************************998888888888899999****************************** PP

  AA_permease_2 376 rphlkr...pgkilvaiig.alfllfllvalffppkgpatqssliyt 418
                     p++     + k++++ ++   +  f++++l + + + +t + l++t
     EHU01390.1 400 FPERHAastF-KMPLGKFMcWACMAFFVFILVLLTLQEDTRQALMVT 445
                    **98555634.466666553333333344444444455666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1190  (0.0663729); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 3076.79
//
Query:       EHU01391.1  [L=231]
Description: hypothetical protein CKS_4144 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-45  155.4   0.0    1.7e-45  155.3   0.0    1.0  1  Extensin-like_C  Extensin-like protein C-terminus
  ------ inclusion threshold ------
      0.046   13.7   0.0       0.48   10.4   0.0    2.0  2  ZNRF_3_ecto      ZNRF-3 Ectodomain


Domain annotation for each model (and alignments):
>> Extensin-like_C  Extensin-like protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   0.0   1.9e-49   1.7e-45       3     177 .]      59     231 .]      57     231 .] 0.91

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 1.9e-49
  Extensin-like_C   3 Claaleea...gvafeeladesegegCglekavrlsalaeevalssaallsCelaaalaawvreevqpaarellgsevariehlgsYaCRninn 93 
                      Cl+ +++a   gv+  +++++ +g+ C+l+ ++rl++ ++ v+lss++l+sC++a+a +++v+ + +++     gs+++rieh+gsYaCRni++
       EHU01391.1  59 CLDVMQRAqqaGVVRFSQRPAVTGA-CPLSGPLRLQN-FGPVSLSSSFLASCPMAVAATMYVAYSREQMLLL-SGSDLTRIEHVGSYACRNIYH 149
                      6555544432277777777777777.***********.788**********************988887764.5******************** PP

  Extensin-like_C  94 ragaklSeHakanAlDiagfeladgrrisvkkdw.eeeaeaaflravraaaCklFstvLgPdynaaHedHlHldlaergglrlCr 177
                      +a+++lSeHa+a+A+Di++++la+g+r+   k+w + ++++ +l+a++++ C++F+++LgPdyn+aH+ H+Hl++   +g+ +Cr
       EHU01391.1 150 QATGRLSEHASADAWDITAYQLANGERLVPGKNWqQPGQKSLLLHALWRSGCNFFGNALGPDYNRAHATHFHLGM---RGAGYCR 231
                      **********************************999**************************************...9999998 PP

>> ZNRF_3_ecto  ZNRF-3 Ectodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.3e-05      0.48      17      46 ..      41      70 ..      37      75 .. 0.93
   2 ?    0.9   0.0     0.051   4.6e+02      33      64 ..     142     173 ..     132     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.3e-05
  ZNRF_3_ecto 17 sgfisivkLeqpelepksClslldkaklal 46
                  g+++ +kL + +++p  Cl ++++a+ a+
   EHU01391.1 41 PGWMTRLKLKRLQTDPAACLDVMQRAQQAG 70
                 69************************9985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.051
  ZNRF_3_ecto  33 ksClslldkaklalerGatavifdisddaeaa 64 
                    C  ++++a   l   a+a  +di+  + a 
   EHU01391.1 142 YACRNIYHQATGRLSEHASADAWDITAYQLAN 173
                  6799*******9*************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1865.77
//
Query:       EHU01392.1  [L=69]
Description: hypothetical protein CKS_4147 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-15   54.4   0.1    7.8e-15   54.2   0.1    1.1  1  GerE          Bacterial regulatory proteins, luxR family
    0.00096   18.9   0.0     0.0015   18.3   0.0    1.3  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.028   14.1   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
      0.037   14.1   0.1      0.041   14.0   0.1    1.1  1  DUF1617       Protein of unknown function (DUF1617)
       0.11   12.0   0.2       0.21   11.1   0.2    1.7  1  Sigma70_r4    Sigma-70, region 4


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   2.2e-18   7.8e-15       3      43 ..      27      67 ..      25      69 .] 0.95

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 2.2e-18
                S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHH CS
        GerE  3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimk 43
                +s+RE+e+L+++aeGk+++eI+ +l+iSe TV+++++n+ k
  EHU01392.1 27 FSQRELEILKWTAEGKTSQEISLILSISEHTVNFYQKNMKK 67
                79************************************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.2e-07    0.0015       5      34 ..      29      58 ..      26      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.2e-07
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTv 34
                ++ l+il+  aeG++ +eI+ +L +s++Tv
  EHU01392.1 29 QRELEILKWTAEGKTSQEISLILSISEHTV 58
                57799************************9 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   7.9e-06     0.028      24      44 ..      39      59 ..      28      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-06
                  TS---HHHHHHHHT--HHHHH CS
  Sigma70_r4_2 24 leglsykEIAellgisegtVk 44
                   eg++ +EI+ +l ise tV+
    EHU01392.1 39 AEGKTSQEISLILSISEHTVN 59
                  69******************8 PP

>> DUF1617  Protein of unknown function (DUF1617)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05     0.041      87     135 ..      11      56 ..       4      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
     DUF1617  87 llneladeeivikggeyskrfidflnfleecedeftsseiilidnileq 135
                 ll+ + de ++++g ++s+r +++l++  e +   ts ei li  i e+
  EHU01392.1  11 LLERFNDEALMVQGNDFSQRELEILKWTAEGK---TSQEISLILSISEH 56 
                 89999****************99999987765...88888888887765 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   5.9e-05      0.21       6      37 ..      28      58 ..       5      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
                -HHHHHHHHHHHTTT--HHHHHHHHTS-HHHH CS
  Sigma70_r4  6 pererevlelrfgeglTleEIgerlgiSrerV 37
                ++re e+l+   + + T +EI+ +l iS+ +V
  EHU01392.1 28 SQRELEILKWTAEGK-TSQEISLILSISEHTV 58
                578888888876555.*************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 602.39
//
Query:       EHU01393.1  [L=203]
Description: acyl-homoserine-lactone synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-05   24.9   0.0    1.6e-05   24.5   0.0    1.2  1  Autoind_synth   Autoinducer synthase
     0.0053   17.4   0.0      0.011   16.4   0.0    1.5  1  Acetyltransf_5  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Autoind_synth  Autoinducer synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.8e-09   1.6e-05       8     100 ..      14     106 ..       7     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.8e-09
  Autoind_synth   8 aklkelfrLRkevFkdRLeWdvq...iidGmerDqyDnlkttyllgvkdegrvigsvRlletkgPnmltdtFsslldgeniaesanllessRFfvD 100
                    + l el   R +vF+   +W++     + G+e+D+yD  + t+l++      + g+ Rl++ + P+  +++  + +d+e++ e + +  s+R  vD
     EHU01393.1  14 SLLAELGSYRYSVFARGEGWSIPprlSTPGQEYDRYDRSDVTWLIAWSVRSGISGCARLMPWTEPEQTEGIVLP-FDHEKVWEMSRF--SARLEVD 106
                    55678888899999999999995333578*****************99999***************99998765.555555553332..4455555 PP

>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-06     0.011       2      59 ..      23      83 ..      22     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-06
  Acetyltransf_5  2 RyevFreemgaegea..aapeldiDefD.avcdhllvideaeevVGtyRllrpdeaerleg 59
                    Ry vF++  g + +   + p++++D++D +  + l+ ++ ++ + G+ Rl++ +e e++eg
      EHU01393.1 23 RYSVFARGEGWSIPPrlSTPGQEYDRYDrSDVTWLIAWSVRSGISGCARLMPWTEPEQTEG 83
                    9****9988888777688899*******556778888888889******999887775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1642.53
//
Query:       EHU01394.1  [L=74]
Description: hypothetical protein CKS_4149 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-38  130.2   1.0    2.2e-38  130.1   1.0    1.0  1  DUF2594   Protein of unknown function (DUF2594)


Domain annotation for each model (and alignments):
>> DUF2594  Protein of unknown function (DUF2594)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   1.0   1.3e-42   2.2e-38       1      74 []       1      74 []       1      74 [] 0.99

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 1.3e-42
     DUF2594  1 msnvdfstsedtetLaeEvaClKalltllLkalGqAdAGkviinmEkyiaeledeeqaevFkntikqiktaYRq 74
                ms++df+ts++t++L++EvaClK+++tl+Lk++GqAdAGkviinmE+y+++l+++ qa+vF+ntikqik+aYRq
  EHU01394.1  1 MSDEDFATSQETQKLSDEVACLKMMITLILKGMGQADAGKVIINMERYVKTLGEKPQADVFSNTIKQIKAAYRQ 74
                899**********************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 643.64
//
Query:       EHU01395.1  [L=219]
Description: DNA-binding response regulator in two-component regulatory system with BarA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-30  104.7   0.0    4.9e-30  104.0   0.0    1.4  1  Response_reg  Response regulator receiver domain
    1.9e-19   68.9   0.2    1.9e-19   68.9   0.2    2.2  3  GerE          Bacterial regulatory proteins, luxR family
    5.1e-06   26.1   0.3    1.1e-05   25.0   0.1    1.7  2  Sigma70_r4_2  Sigma-70, region 4
    0.00012   21.8   0.1    0.00044   20.0   0.0    1.9  2  HTH_23        Homeodomain-like domain
     0.0011   19.0   0.1     0.0047   16.9   0.0    2.1  3  HTH_29        Winged helix-turn helix
     0.0048   16.9   0.1      0.014   15.4   0.1    1.7  1  HTH_Mga       M protein trans-acting positive regulator (MGA)
      0.005   16.4   0.1      0.013   15.0   0.1    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.027   14.6   0.1    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
      0.035   14.0   0.1       0.11   12.4   0.1    1.9  2  HTH_5         Bacterial regulatory protein, arsR family
      0.037   13.5   0.0       0.18   11.4   0.0    2.1  2  Sigma70_r4    Sigma-70, region 4
      0.039   13.8   0.1       0.15   12.0   0.0    1.9  2  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
      0.045   13.9   0.0       0.18   11.9   0.0    2.0  2  HTH_28        Helix-turn-helix domain
      0.053   12.9   0.0        0.2   11.1   0.0    2.0  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.081   13.4   0.1       0.21   12.1   0.0    1.8  2  HTH_40        Helix-turn-helix domain
       0.13   12.2   0.3       0.42   10.6   0.1    2.0  1  HTH_11        HTH domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   4.1e-33   4.9e-30       1     112 []       4     116 ..       4     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 4.1e-33
                   EEEESSSHHHHHHHHHHHH.HTTEEEEE.EESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeeva.eaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagad 95 
                   vl+vdD++lvr+++r++le  +g+ ++a ea  g++a++++++++vd+il+D+nmpg+ Gle++++i + +p++++i+lt h+e++   ++++aga 
    EHU01395.1   4 VLLVDDHELVRAGIRRILEdIKGL-VIAgEACCGEDAVKWCRANQVDVILMDMNMPGIGGLEATRKIVRYNPDIKIIMLTIHTENPLPAKVMQAGAA 99 
                   89*****************77999.6666******************************************************************** PP

                   EEEESSG-HHHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkale 112
                   ++lsK  +p+e+++a++
    EHU01395.1 100 GYLSKGAAPQEVVNAIR 116
                   ************99985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.9   3.5e+03       9      24 ..      92     107 ..      91     119 .. 0.78
   2 ?   -1.7   0.1       1.8   2.1e+03      22      31 ..     128     137 ..     126     138 .. 0.85
   3 !   68.9   0.2   1.6e-22   1.9e-19       2      57 .]     149     204 ..     148     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
                 HHHHHHCTTS-HHHHH CS
        GerE   9 evLrllaeGksnkeIA 24 
                 +v++  a+G+ +k  A
  EHU01395.1  92 KVMQAGAAGYLSKGAA 107
                 6899999998887655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
                 HHHHHHTS-H CS
        GerE  22 eIAeelniSe 31 
                 +IA+++ +S+
  EHU01395.1 128 DIAQQMALSQ 137
                 7*****9995 PP

  == domain 3  score: 68.9 bits;  conditional E-value: 1.6e-22
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  Ls+RE++++ ++++G++++eI+e+ln+S+kTV++++ ++++KLn+  +vel++la
  EHU01395.1 149 CLSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLA 204
                 59***************************************************997 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.2   6.2e+03      31      39 ..     128     136 ..     127     137 .. 0.81
   2 !   25.0   0.1   9.2e-09   1.1e-05      10      50 ..     149     188 ..     147     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.2
                   HHHHHHT-- CS
  Sigma70_r4_2  31 EIAellgis 39 
                   +IA+++ +s
    EHU01395.1 128 DIAQQMALS 136
                   799999877 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 9.2e-09
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRA 50 
                    L+er+ +i+l++  +g +  EI+e+l++s++tV+s+ +R 
    EHU01395.1 149 CLSERELQIMLMI-TKGQKVTEISEQLNLSPKTVNSYRYRM 188
                   59**********7.8**********************9995 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       2.1   2.5e+03      11      30 ..     115     136 ..     109     137 .. 0.66
   2 !   20.0   0.0   3.7e-07   0.00044       6      40 ..     153     187 ..     151     195 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.1
      HTH_23  11 llllae..GlsvreIAreLgvs 30 
                 ++ ++   ++  ++IA+++  s
  EHU01395.1 115 IRSVKAgqRYIASDIAQQMALS 136
                 5555544478888999987665 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3.7e-07
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 + l+i+l+  +G+ v+eI+++L+ s+ Tv  ++ r
  EHU01395.1 153 RELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYR 187
                 5689*************************988765 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.8   5.7e+03      24      36 ..      12      24 ..       9      31 .. 0.73
   2 ?   -3.4   0.1         9   1.1e+04      16      25 ..     127     136 ..     126     136 .. 0.84
   3 !   16.9   0.0     4e-06    0.0047       3      33 ..     156     185 ..     155     190 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
      HTH_29 24 lsrrtvyrwlkrf 36
                l r  ++r+l++ 
  EHU01395.1 12 LVRAGIRRILEDI 24
                5578899999875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9
      HTH_29  16 sqiAkllgls 25 
                 s+iA+++ ls
  EHU01395.1 127 SDIAQQMALS 136
                 6899999987 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 4e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwl 33 
                 q+ l++ +G++ v +i ++l+ls++tv+ ++
  EHU01395.1 156 QIMLMITKGQK-VTEISEQLNLSPKTVNSYR 185
                 899*******9.****************997 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.1e-05     0.014       5      40 ..     152     184 ..     151     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
     HTH_Mga   5 krklkLlelLteneksltldelakeLglseltlqsd 40 
                 +r+l+++  +t+     +++e++++L+ls +t++s+
  EHU01395.1 152 ERELQIMLMITK---GQKVTEISEQLNLSPKTVNSY 184
                 689999999999...44689**************98 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.1e-05     0.013       6      37 ..     155     184 ..     150     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
      HTH_24   6 rkILelLqknprisqreLAerlglSpstvnrr 37 
                 ++I+  + k  +   +e++e+l+lSp tvn +
  EHU01395.1 155 LQIMLMITK--GQKVTEISEQLNLSPKTVNSY 184
                 555555555..67789**************86 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.2e-05     0.027      13      41 ..     156     186 ..     150     191 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.2e-05
                 GGGSSTTTT--STTTSSSS---SSSS..--S CS
       HTH_7  13 rvvkLleeGisiskIAkevnisRsTv..YRy 41 
                 ++  ++ +G+++++I +++n+s+ Tv  YRy
  EHU01395.1 156 QIMLMITKGQKVTEISEQLNLSPKTVnsYRY 186
                 7899*********************977665 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.4     4e+03      17      29 ..     125     137 ..     112     137 .. 0.76
   2 ?   12.4   0.1   9.1e-05      0.11       6      32 ..     156     181 ..     151     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.4
                 EHHHHHHHHTS-H CS
       HTH_5  17 cvcelaeelglsq 29 
                  ++++a ++ lsq
  EHU01395.1 125 IASDIAQQMALSQ 137
                 5689999998887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 9.1e-05
                 HHHHHHTTSSEEHHHHHHHHTS-HHHH CS
       HTH_5   6 kILklLaegelcvcelaeelglsqstv 32 
                 +I+ +  +g ++v+e++e+l+ls+ tv
  EHU01395.1 156 QIMLMITKG-QKVTEISEQLNLSPKTV 181
                 555555555.78**************9 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   1.3e+03      24      34 ..     127     137 ..     113     138 .. 0.85
   2 ?   11.4   0.0   0.00015      0.18       3      44 ..     148     188 ..     147     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
                 HHHHHHHTS-H CS
  Sigma70_r4  24 eEIgerlgiSr 34 
                 ++I++++ +S+
  EHU01395.1 127 SDIAQQMALSQ 137
                 68999999997 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
                 HHS-HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrf.geglTleEIgerlgiSrerVrqiekrA 44 
                 + L+ere +++ +   g++    EI+e+l++S  +V +   r 
  EHU01395.1 148 SCLSERELQIMLMITkGQK--VTEISEQLNLSPKTVNSYRYRM 188
                 579********99997888..88************98765555 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         2   2.4e+03      13      26 ..     123     136 ..     122     138 .. 0.77
   2 ?   12.0   0.0   0.00013      0.15      12      36 ..     163     187 ..     157     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
  Terminase_5  13 GyrvaeIAeelglk 26 
                   y   +IA+ + l+
   EHU01395.1 123 RYIASDIAQQMALS 136
                  577789**999876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00013
  Terminase_5  12 qGyrvaeIAeelglkeatVysWkkr 36 
                  +G  v+eI+e l+l+++tV s+  r
   EHU01395.1 163 KGQKVTEISEQLNLSPKTVNSYRYR 187
                  56789****************9766 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.6   4.3e+03       5      25 ..     114     136 ..     113     137 .. 0.65
   2 ?   11.9   0.0   0.00015      0.18       3      29 ..     155     181 ..     155     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.6
      HTH_28   5 iikllaaGhsvre..aArelgis 25 
                 +i+ ++aG ++ +  +A+++ +s
  EHU01395.1 114 AIRSVKAGQRYIAsdIAQQMALS 136
                 56666777655555588888877 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00015
      HTH_28   3 leiikllaaGhsvreaArelgisrrtv 29 
                 l+i++ + +G  v+e++++l++s+ tv
  EHU01395.1 155 LQIMLMITKGQKVTEISEQLNLSPKTV 181
                 57888888******************9 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   2.1e+03      31      40 ..     127     136 ..     127     137 .. 0.87
   2 ?   11.1   0.0   0.00017       0.2      20      46 ..     157     183 ..     154     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
  HTH_Tnp_ISL3  31 kavArqlgvS 40 
                   +++A+q+ +S
    EHU01395.1 127 SDIAQQMALS 136
                   689***9998 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00017
  HTH_Tnp_ISL3  20 ilelllesrsvkavArqlgvSwtTVwr 46 
                   i+ + ++++ v+++++ql++S++TV+ 
    EHU01395.1 157 IMLMITKGQKVTEISEQLNLSPKTVNS 183
                   55666666669**************86 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       6.2   7.5e+03      16      20 ..     127     131 ..     101     139 .. 0.56
   2 ?   12.1   0.0   0.00017      0.21       7      33 ..     159     185 ..     154     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.2
      HTH_40  16 eeIAk 20 
                  +IA+
  EHU01395.1 127 SDIAQ 131
                 23444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
      HTH_40   7 elleeglsieeIAkerglkesTIegHL 33 
                  ++ +g+++ eI+++ +l+++T+ ++ 
  EHU01395.1 159 LMITKGQKVTEISEQLNLSPKTVNSYR 185
                 5889*******************9985 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00036      0.42       1      33 [.     153     182 ..     152     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
      HTH_11   1 RllqilelLleargpisgeeLAeeLnvSrrtvr 33 
                 R+lqi+ ++  ++g+    e++e+Ln+S +tv 
  EHU01395.1 153 RELQIMLMI--TKGQ-KVTEISEQLNLSPKTVN 182
                 556666666..5553.689************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1884.77
//
Query:       EHU01396.1  [L=610]
Description: excinuclease UvrABC, endonuclease subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-45  153.1   0.0    1.2e-44  151.9   0.0    1.6  1  UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
    1.4e-11   44.5   0.8      3e-11   43.4   0.3    1.9  2  GIY-YIG     GIY-YIG catalytic domain
    2.5e-09   36.6   1.2    5.7e-09   35.4   1.2    1.7  1  UVR         UvrB/uvrC motif
    3.6e-08   33.9   0.0    9.6e-08   32.5   0.0    1.7  1  HHH_5       Helix-hairpin-helix domain
    1.9e-07   30.6   0.0     0.0067   16.2   0.0    2.7  2  HHH         Helix-hairpin-helix motif
    5.4e-07   29.8   0.7       0.22   11.8   0.1    3.5  3  HHH_3       Helix-hairpin-helix motif
    1.3e-05   25.2   0.0    6.7e-05   22.9   0.0    2.1  2  HHH_2       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   4.8e-48   1.2e-44       2     154 .]     385     542 ..     384     542 .. 0.92

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 4.8e-48
                 HHTT-SS---EEEEEEEEEETTTEEEEEEEEEETTEE-GGG-EEEEEE.-SS--HHHHHHHHHHHHHTTS.....---SEEEESSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N   2 ellglkekpkriecyDiShiqgtntvgsmvvfedgkpkkseyRkfkiksvkegdDyaamrevlrRrfkrllkefsklPdLiliDGGkgqlnaakevlee 100
                 e l+l+ k+ r+ec+DiSh++g++t++s+vvf++++p + +yR+++i++ + gdDyaam++vlrRr+ ++ + ++k Pd+iliDGGkgql++ak+v++e
  EHU01396.1 385 EFLKLE-KIGRMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNITGITPGDDYAAMNQVLRRRYGKAIE-EEKIPDVILIDGGKGQLAQAKQVFAE 481
                 678898.69************************************************************997.99************************ PP

                 TT-.....---EEEEES.................SSSEEEE--TT-HHHHHHHHHHHHHHHHHH CS
                 xxx.....xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N 101 lgl.....kipvvglaKdkkrktraka.....eereeevlelkkssealkllqrirdeaHrfAI 154
                 l++     +  ++g+aK+++rk   ++     e    e ++l+++ +al+++q+ird+aH+ AI
  EHU01396.1 482 LDVpwdksRPILLGVAKGTDRKAGLETlffepE---GEGVSLSPDAPALHVIQHIRDDAHNHAI 542
                 ***9986444499****9999888887885333...344***********************98 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.3   1.2e-14     3e-11       2      78 .]      18      93 ..      17      93 .. 0.96
   2 ?   -2.7   0.0       2.8   7.3e+03      23      31 ..     366     374 ..     363     384 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.2e-14
                -EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTTSSSS CS
     GIY-YIG  2 ggvYiirskenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyksnkyn 78
                 gvY +++  + +iYvG++k+l+kRl ++++   +  ++ + + + + i +++  t++eal lE  +ik y++ +yn
  EHU01396.1 18 PGVYRMYDLSGTVIYVGKAKDLKKRLTSYFRTQVGSRKTEALVSNIHHIDVTVTHTETEALLLEHNYIKLYQP-RYN 93
                59***************************9999999999999*******************************.998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
                 HHHHHHHHH CS
     GIY-YIG  23 lekRlkqHn 31 
                 l++Rl+qH 
  EHU01396.1 366 LKTRLSQHS 374
                 899****94 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   1.2   2.2e-12   5.7e-09       2      35 ..     205     238 ..     204     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 2.2e-12
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 ++++ L   meeA+++++FE AA+lRDqi a+++
  EHU01396.1 205 QVLNLLVTRMEEASQSLRFEDAARLRDQIQAVRR 238
                 78999*************************9986 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.7e-11   9.6e-08       4      56 ..     558     609 ..     556     610 .] 0.94

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.7e-11
                 HHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   4 LlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                 L s++G+Gpk+   ll+  ++ ++ l++a+vee+a +pGi+  +Ae+i  +lk
  EHU01396.1 558 LESIEGVGPKRRQQLLKY-MGGLQPLMNASVEEIANVPGISHALAEKIYYSLK 609
                 89****************.999999***********************87776 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.7e-05       0.2      11      30 .]     556     575 ..     546     575 .. 0.84
   2 !   16.2   0.0   2.6e-06    0.0067       5      27 ..     582     604 ..     579     605 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.7e-05
                 HHHHTSTT-SHHHHHHHHHH CS
         HHH  11 eeLlalPGVGpktAeaIlsy 30 
                   L++++GVGpk+ ++ l y
  EHU01396.1 556 SALESIEGVGPKRRQQLLKY 575
                 569************99987 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.6e-06
                 HHTSSHHHHHTSTT-SHHHHHHH CS
         HHH   5 lipasreeLlalPGVGpktAeaI 27 
                 l++as+ee++ +PG+  + Ae+I
  EHU01396.1 582 LMNASVEEIANVPGISHALAEKI 604
                 689******************99 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.06   1.5e+02      43      62 ..     230     249 ..     226     250 .. 0.88
   2 !   11.8   0.1   8.5e-05      0.22      28      63 ..     540     575 ..     530     576 .. 0.92
   3 !   11.4   0.0   0.00011      0.28      10      30 ..     584     604 ..     582     607 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.06
       HHH_3  43 reeLlkvkglgpktfeqlag 62 
                 r++ + v+++++k+f  ++g
  EHU01396.1 230 RDQIQAVRRITEKQFVSNQG 249
                 89*************87765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.5e-05
       HHH_3  28 knIvayReknGpfksreeLlkvkglgpktfeqlagf 63 
                 ++I  +R+k+ ++k+   L +++g+gpk  +ql ++
  EHU01396.1 540 HAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKY 575
                 578889**************************9876 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00011
       HHH_3  10 tAsaeeLqklpGlgpklAknI 30 
                  As+ee++ +pG++ +lA++I
  EHU01396.1 584 NASVEEIANVPGISHALAEKI 604
                 59******************9 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.81   2.1e+03      10      27 ..      50      67 ..      49      79 .. 0.82
   2 !   22.9   0.0   2.6e-08   6.7e-05       7      52 ..     560     605 ..     556     610 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.81
       HHH_2 10 hVGektAklLakrFksld 27
                +VG++  ++L+++ +++d
  EHU01396.1 50 QVGSRKTEALVSNIHHID 67
                79***********99999 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.6e-08
       HHH_2   7 GIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsiv 52 
                 +I  VG k  ++L k  + l+ L++as+ee+++v++i    A++i+
  EHU01396.1 560 SIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANVPGISHALAEKIY 605
                 6999****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4812.10
//
Query:       EHU01397.1  [L=182]
Description: phosphatidylglycerophosphate synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-16   60.9   0.8    1.5e-16   60.9   0.8    2.4  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.8   8.2e-21   1.5e-16       1      66 []       4      71 ..       4      71 .. 0.78
   2 ?   -0.5   1.6      0.12   2.2e+03       7       7 ..     131     131 ..      73     175 .. 0.49

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 8.2e-21
                     S-HHHHHHHHHHHHHHHHHGGGS-H.......HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  1 nlPnaiTllrlllsvlailllltyyp.....lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     n+P  +Tl+r++l+ + +l  ++y p     +v+a+ ++++a++tD++DG+lARr++q++++G++lD++aD
       EHU01397.1  4 NIPTCLTLFRVVLIPFFVL--AFYLPfhwapFVTAL-IFVVAAVTDWFDGFLARRWKQTTRFGAFLDPVAD 71
                     69**********9666664..445555677444444.45678888*************888*********9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.12
                      H CS
  CDP-OH_P_transf   7 T 7  
                      T
       EHU01397.1 131 T 131
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1331.25
//
Query:       EHU01398.1  [L=116]
Description: hypothetical protein CKS_3912 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-39  132.8   1.0    5.6e-39  132.7   1.0    1.0  1  Holin_2-3       Putative 2/3 transmembrane domain holin
  ------ inclusion threshold ------
      0.012   15.7   0.4       0.74   10.0   0.0    2.5  2  ATPase_gene1    Putative F0F1-ATPase subunit Ca2+/Mg2+ transp
       0.16   11.9   0.5       0.16   11.9   0.5    2.4  2  Transport_MerF  Membrane transport protein MerF


Domain annotation for each model (and alignments):
>> Holin_2-3  Putative 2/3 transmembrane domain holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   1.0   9.4e-43   5.6e-39       1     105 []      16     116 .]      16     116 .] 0.97

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 9.4e-43
   Holin_2-3   1 ltvwlllavvlllvvalvapqqlpvvlYklslltLaavlgYwldRllFpyarPgeyleeareegdlleekaefevakgleevfaaamlrravivaaavl 99 
                 l+ wll++++ll +++lv+pqqlpvv+Yklsl+tLaavlgYwldR+lFp+arPg+yl    +++d l+++ +f+v++gl+ vf+aa++rra+ivaa++l
  EHU01398.1  16 LSGWLLTSLLLLGTIGLVSPQQLPVVVYKLSLITLAAVLGYWLDRSLFPKARPGQYL----KHDDRLMADGRFPVQTGLHLVFSAALIRRALIVAAVCL 110
                 678******************************************************....46799********************************* PP

   Holin_2-3 100 avgLgl 105
                 av+ gl
  EHU01398.1 111 AVATGL 116
                 ***997 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.018   1.1e+02      32      45 ..      17      30 ..      12      31 .. 0.84
   2 ?   10.0   0.0   0.00012      0.74      14      28 ..      47      61 ..      44      69 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.018
  ATPase_gene1 32 spwfliiglllGla 45
                  s w+l+ +lllG +
    EHU01398.1 17 SGWLLTSLLLLGTI 30
                  67**********87 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00012
  ATPase_gene1 14 pillggllGywLDkk 28
                   i l ++lGywLD+ 
    EHU01398.1 47 LITLAAVLGYWLDRS 61
                  577899*******94 PP

>> Transport_MerF  Membrane transport protein MerF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.5     0.092   5.5e+02       6      13 ..      25      32 ..      23      34 .. 0.86
   2 ?   11.9   0.5   2.6e-05      0.16       2      26 ..      39      64 ..      38      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.092
  Transport_MerF  6 illGvvGL 13
                    +llG++GL
      EHU01398.1 25 LLLGTIGL 32
                    79*****9 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.6e-05
  Transport_MerF  2 PvLVillGvvGLsAlvGY.LDYVLlP 26
                    Pv V  l ++ L+A++GY LD  L+P
      EHU01398.1 39 PVVVYKLSLITLAAVLGYwLDRSLFP 64
                    9****************659999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 938.03
//
Query:       EHU01399.1  [L=57]
Description: hypothetical protein CKS_3913 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 523.36
//
Query:       EHU01400.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-98  328.9   3.0    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.5   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.1    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  326.1   0.0  2.3e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU01400.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.3e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01400.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01400.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01400.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01400.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01400.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01400.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01400.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01400.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01400.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01400.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU01400.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01400.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01400.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01400.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01400.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01400.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01400.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01400.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01400.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01400.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01400.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01400.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01400.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01400.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01400.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01400.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01400.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01400.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01400.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01400.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01400.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01400.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1047  (0.058397); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 3888.50
//
Query:       EHU01401.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01401.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 947.99
//
Query:       EHU01402.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01402.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01402.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01402.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01402.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 959.10
//
Query:       EHU01403.1  [L=273]
Description: CorA family Mg2+ transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-43  149.8   2.5    1.2e-43  149.5   2.5    1.0  1  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.18   10.5   0.0       0.21   10.3   0.0    1.1  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   2.5   1.4e-47   1.2e-43      23     289 ..       5     266 ..       3     270 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 1.4e-47
        CorA  23 elgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkdeggkpkspgellyrlldeivd 121
                 ++++d++ ++++ + + r+r+ + ++ ll vl++v+l+++++ +++ +l+i+ ++n++++ r +    +++  + l   ++ ++s++ ll+ ll e   
  EHU01403.1   5 HFQVDDDFFDEIHSASPRTRLAEQSNALLAVLNDVTLSQENRSTQNATLWIWCRHNLVVSARYRSSVMIEKMQQGLA--KHNFPSAEALLLYLLGEQEL 101
                 68999999999******************************************************************..589***************** PP

        CorA 122 rlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqd 220
                 +l+ +++ +++ +d +e++l +   k  ++el  +rr l +++r lap  ++l rll+ +   +l+++  + lr   +e++ +l++l +l er++ lq+
  EHU01403.1 102 QLELVVRRISQVVDNIEERLLSPAIKANRSELGHYRRMLLRIQRLLAPEPAALFRLLN-RPPAWLNRDTLRELRAFTEEFSVVLNDLASLMERIRLLQE 199
                 *****************************************************99999.**********9***************************** PP

        CorA 221 tyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfw 289
                 +++++l e+ Nr++++LTv+t++ lP  +++G++GmN++g+P + +++  +f ll+++++++++l  ++
  EHU01403.1 200 EIAARLMEQSNRTLYLLTVITVLALPINIVAGFFGMNVGGIPLASNPH--GFLLLVLIVLAFTLLAGWL 266
                 ************************************************..6665566666666666554 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.3e-05      0.21     344     428 ..     171     263 ..     114     273 .] 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.3e-05
     DUF2207 344 kkskkkakkfkkalkkwksavkk.......kergyfdkkgkkklkklsalglgliilglilillallllvll.lvfllilllillliaiivll 428
                 ++ ++  ++f+  l++++s +++        + +++++ +++ +    +  l+l i +++++++ +++ ++l +++ ++lll+l+++a+ +l+
  EHU01403.1 171 RELRAFTEEFSVVLNDLASLMERirllqeeIAARLMEQSNRTLYLLTVITVLALPINIVAGFFGMNVGGIPLaSNPHGFLLLVLIVLAFTLLA 263
                 444457788888899999999999988888888888888877776666666666666666666665555554744444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2173.09
//
Query:       EHU01404.1  [L=379]
Description: L,D-transpeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   89.5   0.3    4.2e-25   88.3   0.3    1.7  1  Ldt_C     L,D-transpeptidase C-terminal domain
      1e-17   64.9   0.0    1.7e-17   64.2   0.0    1.3  1  YkuD      L,D-transpeptidase catalytic domain
     0.0038   17.3   0.0     0.0076   16.3   0.0    1.5  1  LysM      LysM domain


Domain annotation for each model (and alignments):
>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.3   7.1e-29   4.2e-25       1      67 []     237     305 ..     237     305 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 7.1e-29
       Ldt_C   1 PvKvsvEPdgsryvEvHqPLSrseed..dpqtvpltlskelkkfledaevdkakvkaalerrsGmPvev 67 
                 PvK+svEPdgsr++EvH+PLS++ee+  +++ vp+tl++++ k+l d +v++++v++a+++rsGmPv+v
  EHU01404.1 237 PVKASVEPDGSRWMEVHNPLSTTEEQfnSRELVPITLTQAVGKVLVDGSVNQSQVDKAIQNRSGMPVQV 305
                 9**************************99**************************************98 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.9e-21   1.7e-17       3     144 ..     100     231 ..      98     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.9e-21
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE--.-EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT.......CECCCCEE CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTP.lGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv.......algkvkfv 93 
                  iv++ ae+rl+++ ++ k+v   p+ +G   e ++ TP + t ++++k   ptw++++  + +++   +++           +       ++    ++
  EHU01404.1 100 GIVINSAEMRLYYYPKGSKTVVVLPIGIG---ELGKDTPlNWTTTVQRKKDGPTWTPTKAMHAEYASR-GENL----------PavfpagpDNPMGLYA 184
                 59******9996666666688********...778888845789999999999997666643333322.2222..........1334445567889999 PP

                 E-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEE CS
        YkuD  94 fpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpv 144
                  + g+ ++iHgt+a+       g r ShGC+rl+ +d+k+l++ v+vgt+v
  EHU01404.1 185 LYIGRLYAIHGTNANFGI----GLRVSHGCVRLRADDIKWLFDHVPVGTRV 231
                 999*******88888444....4589***********************98 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0076       9      44 .]      53      88 ..      53      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
                HHHHHHHCTCHHHHHHHHC.TCSSCGG--TTEEEEEE CS
        LysM  9 LwsIAkrygitveklleaN.nlsspdkifpGqkLkiP 44
                L++ A+++++ ++  leaN +++ +  ++pG+kL+iP
  EHU01404.1 53 LEAFAAQFQMGLSNMLEANpGVDVYL-PKPGSKLIIP 88
                56789*******************99.*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2805.35
//
Query:       EHU01405.1  [L=604]
Description: glycosyl hydrolase, family 15 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-48  163.9   0.3    2.2e-46  158.6   0.3    2.2  1  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.3   1.2e-50   2.2e-46       4     360 ..     222     542 ..     219     589 .. 0.89

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 1.2e-50
                     HHHHHHCBCSTTSSBTTS-TT-B-S-S-BSSS.........B--SEEHHHHHHHHHHHH.......HHHHHTTT-HCCHHHHHH..HHHHHHHHC CS
  Glyco_hydro_15   4 ldlylrnvktlilleqnpvtGlliASpstsdp.........DYrytWvRDsvyvilavwglgyrdedrakayeleqslvklmrg..lleamvrqa 87 
                     +++++r++  l+ll+     G + A+ +  +p         DYr+ W+RD+++++ a+++lgy de++ +++++ + +++   +   l+ m+r +
      EHU01405.1 222 QEMVQRSALVLKLLTSWQ-HGSIAAAATFGLPeelggernwDYRASWIRDASFSMYALMRLGYVDEAKHFTEWVGRCVENSHHDemRLQVMYRLD 315
                     678999999999999988.9*****************************************************9888877655543599999999 PP

                     TS-BTTB-TTSCGGGG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHHHCTTHCHCCCCHHHHTHHHHHHHHHHHTTS-EE-TTS--ECEEH CS
  Glyco_hydro_15  88 gkvekfketqstkgLhakyftktgstvvGddewghlQlDatslyllalaqmtasglqiistldevafvqnlvdYieaayktpdfglWEenqgese 182
                     +  e  ++ ++   L ++++  ++++++G+d+w++ QlD++++ + a++ + + g +i++  +    v +++d++++++ +pd g+WE +++ ++
      EHU01405.1 316 SSTELQEM-SL---LNLSGYADSCPVRIGNDAWQQKQLDIYGELMDAIYLANKYGEAISQRGWNH--VSEMLDWLCENWHQPDAGIWEMRGEPEH 404
                     97444443.44...69*************************************************..**************************** PP

                     H..HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.....HHHTTS--S-BCHHHHHHHHCS-TT CS
  Glyco_hydro_15 183 lnassvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaedkeqvqeyrealdasllllpelyfvpa 277
                     + +s ++ ++A+++++++  +       + +++t+ ei +++       + fw+++  ++  +              + ldas+ll+p + fv a
      EHU01405.1 405 FLHSRLMCWVAMDRGLRLGMKRSLPMPYERWDRTRREIRDDI------WKNFWNSERGHFVSTRH-----------GDYLDASMLLMPLVRFVGA 482
                     ******************************************......77899988888887777...........79***************** PP

                     S-TT-TT-TTTSHHHHHHHHHHHHHHHHHSGGGTT-STTS--SBTT--CG.SSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE CS
  Glyco_hydro_15 278 ddvdeeyqnpqsprllaqslyildsllsegflavgeldplvrRysedvkp.dklglsGrpyylctlwtvetlldelyekagkgr 360
                      d          p  +a++++i ++l s+g+         vrRy+    p d+l++ ++++  c++w     + e +++ag+gr
      EHU01405.1 483 TD----------PDWIATLDAIKANLVSDGM---------VRRYNIHETPaDGLTGGEGSFGACSFW-----YVECLARAGRGR 542
                     **..........*******************.........9****99999789999999999*****.....666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4132.05
//
Query:       EHU01406.1  [L=193]
Description: Hin family DNA-invertase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-45  152.8   0.2      1e-44  152.2   0.2    1.2  1  Resolvase  Resolvase, N terminal domain
    3.4e-13   49.4   0.1    1.5e-12   47.4   0.0    2.0  2  HTH_7      Helix-turn-helix domain of resolvase
     0.0071   16.1   0.0      0.017   14.9   0.0    1.6  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.014   16.0   0.2      0.026   15.1   0.2    1.5  1  HTH_32     Homeodomain-like domain
      0.018   14.8   0.1      0.083   12.7   0.1    2.2  2  HTH_38     Helix-turn-helix domain
      0.022   14.5   0.0      0.047   13.4   0.0    1.5  1  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
      0.067   13.2   1.8        0.4   10.7   0.1    2.4  2  HTH_29     Winged helix-turn helix
      0.069   12.9   0.0       0.14   11.9   0.0    1.5  1  HTH_psq    helix-turn-helix, Psq domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.2   4.5e-48     1e-44       1     145 [.       3     136 ..       3     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 4.5e-48
                 EEEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S...S-HHHHHHHHHTT-EEEE CS
   Resolvase   1 aigYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRsvrdlltlleelrekgvslvs 99 
                 +igY+RvSt +q+   + Q++al+ + +++   i   feD+ +SG+ + Rpglkr+l+ + +  gd+lvv+kldRL+Rsv++l+ l+ el+e+g++++s
  EHU01406.1   3 VIGYIRVSTIDQN--SDLQRNALTSANCDR---I---FEDR-MSGKVASRPGLKRALKCVNS--GDTLVVWKLDRLGRSVKNLIALISELHERGAHFRS 90 
                 69***********..***********9666...9...****.********************..*********************************** PP

                 SS..SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
   Resolvase 100 ldegidtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                 l+++idtst+mgr+++++++alae+ereli ert +glaaa+a+G+
  EHU01406.1  91 LTDSIDTSTAMGRFFFHVMSALAEMERELIVERTLAGLAAARAQGR 136
                 **99*****************************************8 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.89     2e+03      10      21 ..      74      85 ..      69      90 .. 0.79
   2 !   47.4   0.0   6.6e-16   1.5e-12       1      43 [.     139     181 ..     139     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.89
                HHGGGGSSTTTT CS
       HTH_7 10 dinrvvkLleeG 21
                 i+ + +L+e G
  EHU01406.1 74 LIALISELHERG 85
                5789999**999 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 6.6e-16
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--SS- CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYRyla 43 
                 GRp +l++++ +++++Ll +G++++++A++++++ sT+YRy++
  EHU01406.1 139 GRPNALKPHEREQIGRLLTKGHTRQQLAIIYGVGLSTLYRYFP 181
                 9****************************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.6e-06     0.017       6      37 ..     148     179 ..     143     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.6e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvyrw 37 
                 eR +i +ll +G+++++ A ++gv  +T+yr+
  EHU01406.1 148 EREQIGRLLTKGHTRQQLAIIYGVGLSTLYRY 179
                 67788899999********************8 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.1e-05     0.026      13      72 ..     124     179 ..     115     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      HTH_32  13 GlegLkdrprrg....rprklsdevrariiallreeprWsprqlaarlaeregvkvShstvyri 72 
                  l+gL+ ++ +g    rp+ l + +r++i +ll ++   + +qla  +     + v  st yr+
  EHU01406.1 124 TLAGLAAARAQGriggRPNALKPHEREQIGRLL-TK-GHTRQQLAI-I-----YGVGLSTLYRY 179
                 4566664433322335*****************.55.458888888.6.....68999999986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   3.2e+03      13      24 ..      78      89 ..      76      99 .. 0.75
   2 ?   12.7   0.1   3.7e-05     0.083       4      39 ..     143     178 ..     140     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38 13 IerllaeGlslr 24
                I  l+++G  +r
  EHU01406.1 78 ISELHERGAHFR 89
                889999997766 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.7e-05
      HTH_38   4 hLsleeReeIerllaeGlslreIArrLgrspsTIsR 39 
                  L ++eRe+I rll +G++  + A + g+  sT +R
  EHU01406.1 143 ALKPHEREQIGRLLTKGHTRQQLAIIYGVGLSTLYR 178
                 5899***************99999888877777776 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.047      21      40 ..     161     180 ..     158     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
   HTH_Tnp_4  21 tyqdLayrFgvsestvsrif 40 
                 t q+La+++gv  st +r+f
  EHU01406.1 161 TRQQLAIIYGVGLSTLYRYF 180
                 89*****************9 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5      0.13     3e+02      40      62 ..     127     149 ..     120     150 .. 0.78
   2 ?   10.7   0.1   0.00018       0.4       3      32 ..     151     179 ..     149     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.13
      HTH_29  40 Glaalld.rrrsgrprnrlseeqe 62 
                 Glaa++  +r +grp+  l+++++
  EHU01406.1 127 GLAAARAqGRIGGRPNA-LKPHER 149
                 88888886666899986.999887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrw 32 
                 q+ +ll +G+ t +q+A ++g+  +t yr+
  EHU01406.1 151 QIGRLLTKGH-TRQQLAIIYGVGLSTLYRY 179
                 7899******.9*****************8 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.4e-05      0.14      20      37 ..     163     180 ..     157     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
     HTH_psq  20 rkAArkYgiPrsTLwrrk 37 
                 +++A +Yg+  sTL+r++
  EHU01406.1 163 QQLAIIYGVGLSTLYRYF 180
                 89*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1381.82
//
Query:       EHU01407.1  [L=42]
Description: hypothetical protein CKS_3922 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   48.0   0.1    1.4e-12   47.9   0.1    1.0  1  Caudo_TAP  Caudovirales tail fibre assembly protein, lambda g
  ------ inclusion threshold ------
      0.011   16.5   0.1      0.012   16.5   0.1    1.0  1  DUF469     Protein with unknown function (DUF469)


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   1.5e-16   1.4e-12      91     129 ..       2      40 ..       1      41 [. 0.97

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.5e-16
   Caudo_TAP  91 lgiatdeEkaaLlawkkYrvlLnrvDvslapdieWPeqP 129
                 lg +++++ka+L  w+ Y +++++vDvs+apd+ WP+ P
  EHU01407.1   2 LGDISEKNKAKLSSWMAYKTAVKAVDVSTAPDVIWPAPP 40 
                 899**********************************99 PP

>> DUF469  Protein with unknown function (DUF469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.5   0.1   1.3e-06     0.012      68     101 .]       3      36 ..       1      36 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
      DUF469  68 gsvteedreaveawlkarsevkevevseLvDawy 101
                 g ++e++++++++w++ ++ vk+v+vs   D+ +
  EHU01407.1   3 GDISEKNKAKLSSWMAYKTAVKAVDVSTAPDVIW 36 
                 889**************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 321.16
//
Query:       EHU01408.1  [L=350]
Description: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.4e-109  362.7   0.0   9.8e-109  362.5   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.5   0.0  5.5e-113  9.8e-109       8     274 ..      39     338 ..      25     339 .. 0.97

  Alignments for each domain:
  == domain 1  score: 362.5 bits;  conditional E-value: 5.5e-113
                   H....HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH........... CS
  DAHP_synth_1   8 a....adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel........... 89 
                   a    ++il+G ddrllv++GPCsi+d eaa+eyA+rl +l+e+lk +le++mr+yfeKp r+tvg+kGlindp ++++++ +++l           
    EHU01408.1  39 ArqaiHQILNGADDRLLVVIGPCSIHDTEAAKEYAARLLNLREQLKGELEVVMRVYFEKP-RTTVGWKGLINDPYMDGTFQLNDGLrlarklllein 134
                   0446699*****************************************************.9*********************************** PP

                   ..T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEE CS
  DAHP_synth_1  90 ..glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcer 171
                     glp+a+e+ld+i++qy+ad++++++iGArttesq+++elasgls+pvg+Kngtd    vaid+++aa  +++fl+v         et+g+++c++
    EHU01408.1 135 dsGLPAAGEFLDMITPQYVADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDgtikVAIDAINAAGSPHCFLSVtkyghsaivETRGNSDCHI 231
                   ************************************************************************************************* PP

                   EEEESTSSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHH CS
  DAHP_synth_1 172 glrggkktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsdgkqalkygksetdac 264
                   +lrggk++n+++++v+avk+ +e++g + +vm+D+sHans+k++++q++v++++++++ +G   i+GvmiEshl +g+++++++++l ygks+tdac
    EHU01408.1 232 ILRGGKEPNYSASHVSAVKAGLEKAGLPqQVMIDFSHANSSKQFQKQMQVADDVAQQMINGergIIGVMIESHLVEGNQSLESGEPLVYGKSVTDAC 328
                   *************************8779******************************************************************** PP

                   HHHHHHHHHH CS
  DAHP_synth_1 265 ilkeltelll 274
                   i++e+te++l
    EHU01408.1 329 IGWEDTEKVL 338
                   ******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2745.76
//
Query:       EHU01409.1  [L=250]
Description: phosphoglyceromutase 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-37  128.6   0.1    4.8e-34  117.8   0.1    2.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.1   2.7e-38   4.8e-34       1     184 [.       6     221 ..       6     229 .. 0.92

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.7e-38
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE..EE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai..ysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeia 94 
                 l+LvRHGe++wn e+r+ g+ dv+L+++Gr++A+a+++ l++e++ ++  y+S lkRa++T   i+++l+   lpve+  +L+E+++G+++gl +ae a
  EHU01409.1   6 LVLVRHGESQWNNENRFTGWYDVDLSDKGRTEAKAAGQLLKKEGFVFDfaYTSVLKRAIHTLWNILDELDqawLPVEKSWRLNERHYGALQGLDKAETA 104
                 79****************************************88777777************************************************* PP

                 HH..HSHHHHHHHHH-GGG-B.........................S-BHHHHHHHHHHHHH..HHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGG CS
  His_Phos_1  95 eeypeeleawlrdpadvrppg.........................gEsledvaaRvaaale..elaarhegetvlvVsHggvirallarllglpleel 166
                 ++y +e  +++r+   v+pp+                          Esl+   +Rv + ++   l +  +ge+v++ +Hg  +ral+++l +++ +e+
  EHU01409.1 105 AKYGDEQVKQWRRGFAVTPPEldrsderfpghdpryaslspeqlptTESLALTIDRVIPYWNesILPRIKSGEKVIIAAHGNSLRALVKYLDNMSEDEI 203
                 *********999999999999999999999999999999999999999***********999533556666777************************* PP

                 GGB---TT-EEEEEE-SS CS
  His_Phos_1 167 rrleldnaslsvlefdeg 184
                  +l++++    v efde+
  EHU01409.1 204 LELNIPTGVPLVYEFDEN 221
                 *99999888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1935.86
//
Query:       EHU01410.1  [L=344]
Description: galactose-1-epimerase (mutarotase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-83  278.5   0.0    7.2e-83  278.3   0.0    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.3   0.0     4e-87   7.2e-83       4     301 .]      19     340 ..      16     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 278.3 bits;  conditional E-value: 4e-87
                  EEEETTEEEEEECTCTTEEEEEEETT.S..TEESB-B-STHHHHHHSC.CSSCEECSS-SEEETTEEEETTEEEECCCCBTTTCEETBSGGG...SB- CS
  Aldose_epim   4 tlkngaglsakislyGAtllslkvpdke..qrevllgsddaeeylkds.yfgatlgrvanRianGeFeldGkpyqlpqneegknplHGgarg...reW 95 
                   l+n++g+ a+++++GAt+ls +vp ++   re llg+ + ++yl ++ y+gat+gr+anRia++  +l+    ql  n+ g+++lHGg  g   r+W
   EHU01410.1  19 VLRNAHGMVATFMDWGATWLSARVPLQDgsVREALLGCATPSDYLHQDaYLGATVGRYANRIAGA--KLNTLNRQLLANQ-GEHQLHGGPDGfdkRRW 113
                  699***********************99**********************************988..99***********.***************** PP

                  EEEEEEETTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEEEEEEEEEEESSS-EEEEEEEEEEEETSSC..TCTGGEEEEEEEEEEEECTTSGEEE CS
  Aldose_epim  96 eveevkeddgvtvslvlkpdgeegypgdlevrvtytLnednelkieyeatndgkptpfnltnHtYFnlsge..sidshelqieadeylevdeeliptg 191
                  ++ +++e ++v  +l + pdg++gypg+l + ++y L++dn+l+i+yea+ d +p+p+nltnH+YFnl  +  + ++h+lq++ad+yl+vd+e+ip g
   EHU01410.1 114 QIISQSE-NEVHYRLDS-PDGDQGYPGNLIADLRYVLDDDNCLSIHYEARCD-QPCPVNLTNHAYFNLDAHhgDARQHRLQLHADRYLPVDSEGIPNG 208
                  ******6.9******99.**********************************.8***************99*************************** PP

                  EEEECTTCCCCCCSSEEHCSSET.........EEEEEEEESSC...SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT........SEECCEEESS CS
  Aldose_epim 192 elkdvkgtpfdfrqpkaigedlk.........glDhayllksk...lkaviidpdkksgiklevsttepalvvytgnflk........kylsreglal 269
                   lk v+gt+fdfrq+k++ +d+          g+Dha+ll+s     ++++ +++++ +++l+v+t++pal++y+gn+l          y +++g+al
   EHU01410.1 209 PLKAVDGTSFDFRQAKSLAQDFLadadqqavkGYDHAFLLNSAgdaSQPAAALWSQDGKLQLSVTTSAPALQLYSGNYLAgtrareqeSYTAYQGIAL 306
                  ************************************************************************************************** PP

                  ECTCETCCCECHHHT..-EEEHTTTEEEEEEEEE CS
  Aldose_epim 270 etqmlpdepnhpefp..sivlkpGesysaetsys 301
                  e ++lpd+pnhpe+p  ++ l+pG +++++t+y+
   EHU01410.1 307 ESEFLPDSPNHPEWPqdDCWLQPGDRWESVTRYR 340
                  *******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2750.47
//
Query:       EHU01411.1  [L=382]
Description: galactokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-23   80.2   0.1    1.2e-22   79.1   0.1    1.6  1  GalKase_gal_bdg  Galactokinase galactose-binding signature
      6e-14   52.0   0.5    1.1e-13   51.2   0.5    1.5  1  GHMP_kinases_N   GHMP kinases N terminal domain
    4.6e-12   46.1   0.1    1.4e-11   44.5   0.0    1.8  2  GHMP_kinases_C   GHMP kinases C terminal
  ------ inclusion threshold ------
       0.15   11.9   1.4       0.15   11.9   0.1    1.6  2  Phage-tail_3     Putative phage tail protein


Domain annotation for each model (and alignments):
>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   2.8e-26   1.2e-22       2      48 ..      10      57 ..       9      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 2.8e-26
                     HHHHHHS---.EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEEE CS
  GalKase_gal_bdg  2 eFqktFgkep.fvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiavs 48
                      F++tFg  p + ++APGRvnLiGEHtDYn+GfVlp+Ai+++++ia++
       EHU01411.1 10 VFTDTFGYAPtHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVIACA 57
                     599******66***********************************97 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.5   2.5e-17   1.1e-13       1      65 [.     114     181 ..     114     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.5e-17
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHH...HHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglslee...aklaleaerlaqggngsggDvaasvyG 65 
                     d+vi++++P gaGL+SSA+l va+ + + +l++l+l+    a  ++eae++++g n++++D+  s++G
      EHU01411.1 114 DMVISGNVPQGAGLSSSASLEVAVGTVFQQLFNLPLDGaaiAVNGQEAENQFVGCNCGIMDQLISALG 181
                     5789*******************************954467788*********************999 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8     8e+03      28      47 ..     165     184 ..     153     188 .. 0.71
   2 !   44.5   0.0   3.2e-15   1.4e-11       3      84 ..     280     361 ..     276     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
  GHMP_kinases_C  28 vvgilppeleellealselG 47 
                      vg+ + ++++l++al + +
      EHU01411.1 165 FVGCNCGIMDQLISALGQKD 184
                     47778888889999887666 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 3.2e-15
  GHMP_kinases_C   3 ealergdlellgellnlsqrs.elkavvgilppeleelleal.selG.algaklsGaGgGptvfalfkdkdeaeqvaralreefe 84 
                     e l rgdl ++gel+ +s++s    + ++i  p +++l+e+   e G   g++++G G+G++++al    + ++qv+ a+++++e
      EHU01411.1 280 EVLSRGDLTRMGELMAESHASmR--DDFEITVPPVDTLVEIVkAEIGnRGGVRMTGGGFGGCIVALM-PLELVDQVQAAVASQYE 361
                     56789***************954..59***************99999********************.**************997 PP

>> Phage-tail_3  Putative phage tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.7   7.8e+03      79      95 ..      49      65 ..      48      73 .. 0.70
   2 ?   11.9   0.1   3.4e-05      0.15      91     137 ..     267     313 ..     248     319 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
  Phage-tail_3 79 dYqaatveardaagige 95
                  dYq+ ++ ar+++++ +
    EHU01411.1 49 DYQTVIACARRDDRQVR 65
                  78888888888877763 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.4e-05
  Phage-tail_3  91 agigervstvelplvlsagqAqrvaqrllqraraeretvtfslppey 137
                     i+e+ +t+e++ vls+g   r+++ +++++++ r+ + +++pp +
    EHU01411.1 267 HVITENARTLEAAEVLSRGDLTRMGELMAESHASMRDDFEITVPPVD 313
                   45669***************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2750.34
//
Query:       EHU01412.1  [L=348]
Description: galactose-1-phosphate uridylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-70  235.5   0.1    8.4e-70  234.9   0.1    1.3  1  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
      5e-69  231.3   1.2    6.9e-69  230.9   0.2    1.7  2  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
    0.00014   22.5   0.0      0.002   18.8   0.0    2.3  2  HIT              HIT domain


Domain annotation for each model (and alignments):
>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.1   1.4e-73   8.4e-70       2     184 .]       3     176 ..       2     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 1.4e-73
  GalP_UDP_transf   2 eieeddaiyashrrfnpltgewvlvsphrtkrpwqgqqekiskdtlpekDklkcyLcPgnsrangefnpkykstfvftndFpalsedsnyikte 95 
                      ++++ d+   +hrr+nplt++w+lvsphr+krpwqg+qe+++ ++lp++D + c+Lc+gn+r++g+ np+yk+t+vftndF+al++d+++  + 
       EHU01412.1   3 KFNPVDH---PHRRYNPLTDQWILVSPHRAKRPWQGAQETPAVNALPSHD-PDCFLCAGNTRITGDVNPDYKGTYVFTNDFAALMTDTPDAPE- 91 
                      6778899...****************************************.****************************************99. PP

  GalP_UDP_transf  96 aiaknilfkaepayGrceviifsskheltladlspkdikavvaaWqektaelkakeypkcvlifENkGaamgvsnphPHgqiwaeehlp 184
                        +++ l + e+a+G+ +vi+fs++h++tl+++s + +++vv++Wqe+tael++  ++ +v++fENkGaamg+snphPHgq+wa+++lp
       EHU01412.1  92 --SDDLLIRCESARGTSRVICFSPDHSKTLPEMSLSALEEVVRTWQEQTAELGQ--HYPWVQVFENKGAAMGCSNPHPHGQVWANSFLP 176
                      ..899**********************************************999..*******************************98 PP

>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         1   6.1e+03      35      51 ..      17      33 ..      14      34 .. 0.85
   2 !  230.9   0.2   1.1e-72   6.9e-69       2     166 ..     183     346 ..     182     347 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
                   E-SSEEEE--TT--STT CS
  GalP_UDP_tr_C 35 lkdsflavvpylakWPf 51
                   l+d+++ v+p+ ak P+
     EHU01412.1 17 LTDQWILVSPHRAKRPW 33
                   5799******9999886 PP

  == domain 2  score: 230.9 bits;  conditional E-value: 1.1e-72
                    HHHHHHHHHHH.SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EE CS
  GalP_UDP_tr_C   2 ldsfekYfagsngsillhdyvqmelaekervvelkdsflavvpylakWPfevlllrkaevkslaeladeekedlaailkklarkydnlfetsfeys 97 
                    +d++++Yfa+  gs+ll+dy+ +e ++ +r+v+++++++avvp++a+WPfe+lll+ka+vk++++l++++++dla +lk l+++ydnlf++ f+ys
     EHU01412.1 183 DDHQRQYFAKT-GSPLLVDYCAREQQDGSRTVVETEHWIAVVPWWAAWPFETLLLPKAHVKRMTDLSEAQRNDLAKALKLLTSRYDNLFQCAFPYS 277
                    689********.************************************************************************************ PP

                    EEEE---SCCCTTTT-.-EEEEE--BCSSTTEB----THHHHT-EEESS-HHHHHHHHH.CS-SS-TTCH CS
  GalP_UDP_tr_C  98 mGlhqaplnaeednsw.lHaHfevpllrsatvrkieVGlelLperlrdllaEqaaerlrnalsevHkeaa 166
                    mG+h+ap+n+ee+++w lHaHf++pllrsatvrk++VG+e+L+e++rdl+aEqaaerlr a+s++H+++a
     EHU01412.1 278 MGWHGAPFNGEENAHWqLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLR-AVSDIHFREA 346
                    ***********************************************************.******9987 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.15   8.9e+02      39      89 ..     118     166 ..     108     172 .. 0.73
   2 !   18.8   0.0   3.3e-07     0.002       6      65 ..     210     269 ..     205     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.15
                 SGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-E CS
         HIT  39 elhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlH 89 
                 +l +++ ++l +++++ ++  ++l++  +   ++v+ n+ga+ g s +h H
  EHU01412.1 118 TLPEMSLSALEEVVRTWQEQTAELGQ--HYPWVQVFENKGAAMGCSNPHPH 166
                 55555556666777777777777777..45589999999999999988877 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.3e-07
                 CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTC CS
         HIT   6 stvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkk 65 
                 s+ v+e+++ +a++   + +p  +L++pk+h+++++dl+e+ + +l +a k + +   + 
  EHU01412.1 210 SRTVVETEHWIAVVPWWAAWPFETLLLPKAHVKRMTDLSEAQRNDLAKALKLLTSRYDNL 269
                 77899*******************************************999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2502.00
//
Query:       EHU01413.1  [L=490]
Description: ATP-binding component of molybdate ABC transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-51  172.0   0.0    1.5e-25   90.3   0.0    2.2  2  ABC_tran        ABC transporter
    1.6e-18   67.6   5.3    1.7e-07   31.4   0.3    4.2  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      3e-08   33.3   0.0     0.0023   17.7   0.0    2.7  2  AAA_29          P-loop containing region of AAA domain
    2.6e-07   30.3   0.8       0.19   11.2   0.0    3.5  4  SMC_N           RecF/RecN/SMC N terminal domain
    6.2e-07   29.5   0.0        0.2   11.6   0.0    3.3  3  RsgA_GTPase     RsgA GTPase
    4.7e-06   27.3   0.9      0.065   13.7   0.1    2.4  2  AAA_23          AAA domain
    2.4e-05   24.2   0.1      0.096   12.4   0.0    3.1  3  AAA_15          AAA ATPase domain
    3.2e-05   24.2   3.0       0.43   10.9   0.1    3.8  2  AAA_22          AAA domain
    3.3e-05   24.1   0.1      0.096   12.8   0.0    3.0  2  AAA_33          AAA domain
      4e-05   24.1  10.1      0.051   14.0   2.4    3.4  2  AAA_16          AAA ATPase domain
    4.2e-05   23.6   0.2       0.26   11.4   0.0    3.2  3  MMR_HSR1        50S ribosome-binding GTPase
    5.9e-05   23.2   0.1      0.048   13.9   0.3    3.5  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
    9.6e-05   22.7   0.1      0.054   13.7   0.0    2.4  2  AAA_28          AAA domain
    0.00037   20.3   2.1        1.7    8.3   0.0    4.1  4  IstB_IS21       IstB-like ATP binding protein
    0.00052   19.6   0.0      0.066   12.7   0.0    2.7  3  AAA_7           P-loop containing dynein motor region
     0.0009   19.3   0.0       0.05   13.7   0.0    2.3  2  Dynamin_N       Dynamin family
     0.0021   17.4   0.0      0.069   12.5   0.0    2.2  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
     0.0035   17.9   0.0       0.55   10.8   0.0    2.5  2  AAA_18          AAA domain
     0.0041   17.5   0.1       0.79   10.2   0.0    3.1  2  AAA             ATPase family associated with various cellula
     0.0087   15.7   0.1       0.89    9.1   0.1    2.9  2  AAA_25          AAA domain
     0.0092   15.6   0.0        1.5    8.3   0.0    2.3  2  AAA_27          AAA domain
       0.01   15.4   0.0       0.44   10.0   0.0    2.3  2  Ploopntkinase1  P-loop Nucleotide Kinase1
  ------ inclusion threshold ------
      0.012   13.2   0.0       0.15    9.5   0.0    2.1  2  DUF3584         Protein of unknown function (DUF3584)
      0.021   14.6   0.0        0.5   10.1   0.0    2.4  2  HopA1           HopA1 effector protein family
      0.023   14.6   4.4        1.7    8.5   0.2    3.5  3  NACHT           NACHT domain
      0.029   14.8   0.1        8.9    6.8   0.0    2.5  2  RNA_helicase    RNA helicase
      0.034   13.4   0.0        4.3    6.6   0.0    2.3  2  Zeta_toxin      Zeta toxin
       0.13   10.9   0.0        4.4    5.8   0.0    2.1  2  AAA_13          AAA domain
       0.17   11.0   0.1         18    4.4   0.0    2.9  3  NB-ARC          NB-ARC domain
       0.18   11.5   0.0         12    5.5   0.0    2.3  2  AAA_24          AAA domain
       0.22   10.6   1.2        5.3    6.1   0.2    2.7  3  DUF815          Protein of unknown function (DUF815)
       0.23   11.2   0.7         19    5.0   0.0    2.9  3  ATP_bind_1      Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   4.7e-25   2.7e-22       5     136 ..      23     163 ..      19     164 .. 0.79
   2 !   90.3   0.0   2.7e-28   1.5e-25       2     136 ..     277     429 ..     276     430 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 4.7e-25
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG........B-HHHCCHCEEEE-SS--S-TTSBHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke........qeleslrkeigvlpqepqlfpeltvren............... 79 
                 +++l++ge++a+vG nG+GKS+L+++l+g+l p +G+++ d +++++           +e+ r++   l++            +               
  EHU01413.1  23 DVHLRRGERWAFVGANGSGKSSLARALSGELPPLSGKVTHDfQRPWRLsleqlqklVAEEWQRNNTDLLSEG-----------Eddsgrttaeiiqdav 110
                 68899*********************************6664444444444444444444445555555554...........0344444455578889 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ +++e++++++g++ l  ++     + LS G+ ++  l++al+ +p+ll+lDEp+
  EHU01413.1 111 KDAARCERLAAQFGISSLLSRRF----KYLSTGETRKTLLCQALMAQPDLLILDEPF 163
                 99999*****************9....9****************************6 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 2.7e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 + +++++++ge + i+G+nGaGKStLl+l++g + +  + +++l g    + +++   +++ig+++   +l+++++v  +                 sd
  EHU01413.1 277 NGLNWQVNPGEHWHIIGPNGAGKSTLLSLVTGDHPQgYSNDLTLFGIRRGSgETIWDIKQHIGYVSSSLHLDYRVSVNVRtvilsgffdsiglyqaVSD 375
                 6899****************************987667777777755444459**********************9777789*************99** PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++ a ++l l+++++  ++   +sLS Gq++ + +aral+k+p+ll+lDEp 
  EHU01413.1 376 RQMALAQQWLALTGMDNAMANAPFHSLSWGQQRLLLIARALVKHPTLLILDEPL 429
                 **************9999998888*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05    0.0089       4      20 ..      34      50 ..      33     106 .. 0.93
   2 ?    4.7   0.1      0.04        23     238     278 ..     137     174 ..     123     191 .. 0.74
   3 !   15.1   0.1   2.7e-05     0.015       4      19 ..     291     306 ..     291     350 .. 0.82
   4 !   31.4   0.3     3e-10   1.7e-07     232     298 ..     397     461 ..     392     463 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
      AAA_21  4 liGpNgsGKSnLLdald 20
                ++G+NgsGKS+L +al+
  EHU01413.1 34 FVGANGSGKSSLARALS 50
                89**************6 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.04
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrl 278
                 S G  r   l  al +++   +ll++DEp  gL+    + l
  EHU01413.1 137 STGETRKTLLCQALMAQP---DLLILDEPFDGLDVDSRANL 174
                 666666646666666666...9***********98655554 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 2.7e-05
      AAA_21   4 liGpNgsGKSnLLdal 19 
                 +iGpNg+GKS+LL + 
  EHU01413.1 291 IIGPNGAGKSTLLSLV 306
                 8************877 PP

  == domain 4  score: 31.4 bits;  conditional E-value: 3e-10
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrllellkelsrngaQviltTHS 298
                  p+++lS G++rl  l++  l  ++  +ll++DEp  gL+P   +l+rr++++l  +   ++Q+++++H 
  EHU01413.1 397 APFHSLSWGQQRL-LLIARALVKHP--TLLILDEPLQGLDPlnrQLVRRFVDILIGEG--RTQLLFVSHH 461
                 699**********.99999999998..**************88888888888883333..58*******6 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00016     0.092      17      42 ..      24      49 ..      17      59 .. 0.80
   2 !   17.7   0.0     4e-06    0.0023      13      39 ..     277     303 ..     268     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAi 42
                +++++ +   ++G++GsGKS+l  A+
  EHU01413.1 24 VHLRRGERWAFVGANGSGKSSLARAL 49
                5555445889***********97665 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4e-06
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTll 39 
                 +g  +++++ +   ++Gp+G+GKSTll
  EHU01413.1 277 NGLNWQVNPGEHWHIIGPNGAGKSTLL 303
                 55679999988999************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00033      0.19      28      44 ..      33      49 ..      23      54 .. 0.89
   2 ?   -3.0   0.0         7   3.9e+03     158     187 ..     154     182 ..     108     193 .. 0.68
   3 !    9.3   0.0    0.0012      0.68      26      41 ..     288     303 ..     262     307 .. 0.80
   4 ?    6.1   0.0     0.012       6.5     136     200 ..     401     463 ..     336     471 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
                EEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlldAi 44
                a vG+NGSGKs+l  A+
  EHU01413.1 33 AFVGANGSGKSSLARAL 49
                679**********9998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7
                 --SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 158 paplyllDeidaaLDeknvkkvaellkeks 187
                 p  l +lDe    LD   ++++   l + +
  EHU01413.1 154 P-DLLILDEPFDGLDVDSRANLTATLATLH 182
                 3.3667888777788887777777776555 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0012
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 +  i+GpNG+GKs ll
  EHU01413.1 288 HWHIIGPNGAGKSTLL 303
                 457**********987 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.012
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislree 200
                 +LS G++ L    Ll+A   vk   l +lDe  + LD  n++ v ++++    + ++Q++ +s+++e
  EHU01413.1 401 SLSWGQQRL----LLIARALVKHPTLLILDEPLQGLDPLNRQLVRRFVDilIGEGRTQLLFVSHHAE 463
                 688888888....566777889999*****************9999888332233599999998765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00058      0.32      99     132 ..      29      62 ..      10     102 .. 0.84
   2 ?    3.4   0.0      0.11        64      33      61 ..     172     200 ..     140     220 .. 0.81
   3 !   11.6   0.0   0.00035       0.2      80     122 ..     266     309 ..     202     347 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00058
                  TSEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevse 132
                  ++  ++vG  G GKS+L  al +el    g+v +
   EHU01413.1  29 GERWAFVGANGSGKSSLARALSGELPPLSGKVTH 62 
                  47789*****************997666665555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHTT-EEEEEEE-GGG--H CS
  RsgA_GTPase  33 nlldrfLvlaeekgiepvivlnKiDllee 61 
                    l+  L++++e+++++v+vln+ D + +
   EHU01413.1 172 ANLTATLATLHEADVTLVLVLNRFDDIPD 200
                  568889*****************997765 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00035
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                   +vs +++  ++ l+ +++  +   ++G+ G+GKStL+  ++++
   EHU01413.1 266 AVVSYNDQPVINGLNWQVNPgEHWHIIGPNGAGKSTLLSLVTGD 309
                  56666777777777777776688899************999886 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00043      0.24      24      39 ..      34      49 ..      32     148 .. 0.91
   2 !   13.7   0.1   0.00012     0.065      24      37 ..     291     304 ..     284     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00043
      AAA_23 24 ItGpNGaGKTTildAi 39
                ++G NG+GK+++ +A+
  EHU01413.1 34 FVGANGSGKSSLARAL 49
                89**********9997 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00012
      AAA_23  24 ItGpNGaGKTTild 37 
                 I+GpNGaGK+T+l 
  EHU01413.1 291 IIGPNGAGKSTLLS 304
                 99**********96 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00017     0.096      27      43 ..      33      49 ..      20      52 .. 0.88
   2 !    6.9   0.0    0.0077       4.3      28      41 ..     291     304 ..     287     306 .. 0.91
   3 ?    0.3   0.0      0.78   4.4e+02     291     364 ..     396     460 ..     334     462 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
      AAA_15 27 vliGkNnsGKSsileal 43
                 ++G+N+sGKSs+++al
  EHU01413.1 33 AFVGANGSGKSSLARAL 49
                79*************99 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0077
      AAA_15  28 liGkNnsGKSsile 41 
                 +iG+N++GKS++l 
  EHU01413.1 291 IIGPNGAGKSTLLS 304
                 8***********96 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.78
      AAA_15 291 elplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 + p++  + G+qrlll++  +++          + +l+++EP   L p + + + +    l+ +++tQ+++ +H
  EHU01413.1 396 NAPFHSLSWGQQRLLLIARALVK--H-------PTLLILDEPLQGLDPLNRQLVRRFVDILIGEGRTQLLFVSH 460
                 56788889999999988754443..3.......36788899988888888888888888888888888888887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.4    0.0018         1      10     128 ..      34     191 ..      31     196 .. 0.60
   2 !   10.9   0.1   0.00076      0.43      10      38 ..     291     340 ..     285     464 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..........................erpevvfvtlpsstsskdllrellralglelka............ 70 
                  +G  G+GK+ l+r l  +l+  +   +                          +                             + +            
  EHU01413.1  34 FVGANGSGKSSLARALSGELPPLSG--KvthdfqrpwrlsleqlqklvaeewqrN-----------------------------NTDllsegeddsgrt 101
                 5899*************99952211..1223444333333333333333333321.............................222555555555555 PP

      AAA_22  71 ................................erlsseell.ealeqalraravielliiDE.aqhlr..s.eealeeLrsllnlsrkgvqliLv 128
                                                 + ls+ e + ++l qal a+ +  lli+DE ++ l+  s +++  +L +l+   + +v+l+Lv
  EHU01413.1 102 taeiiqdavkdaarcerlaaqfgissllsrrfKYLSTGETRkTLLCQALMAQPD--LLILDEpFDGLDvdSrANLTATLATLH---EADVTLVLV 191
                 555666666666666668888888888899997777777776777777777777..999999556687764244444444444...477777776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00076
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.....................e 38 
                 ++G+ G+GK+tll  ++  +++ ++ +                       
  EHU01413.1 291 IIGPNGAGKSTLLSLVTGDHPQGYSNDLtlfgirrgsgetiwdikqhigY 340
                 9**************99999888776656666666666666666544442 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00017     0.096       3      25 ..      33      67 ..      32     117 .. 0.63
   2 !    7.8   0.0    0.0063       3.5       4      19 ..     291     306 ..     289     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00017
      AAA_33  3 llvGlpGsGKstlaerllkklg............a 25
                 +vG++GsGKs la+ l  +l+             
  EHU01413.1 33 AFVGANGSGKSSLARALSGELPplsgkvthdfqrP 67
                69***************999986654444444444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0063
      AAA_33   4 lvGlpGsGKstlaerl 19 
                 ++G++G+GKstl+  +
  EHU01413.1 291 IIGPNGAGKSTLLSLV 306
                 79**********8765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.4   9.1e-05     0.051      23     164 ..      28     184 ..      16     204 .. 0.55
   2 !   13.0   0.5   0.00018       0.1      28     161 ..     290     446 ..     281     458 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.1e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.............a 107
                 r+e   ++G+ G+GKssl+r+l  +l       l+gk ++      ++  +   l   e l++l +e       +w++  ++ l+             +
  EHU01413.1  28 RGERWAFVGANGSGKSSLARALSGELPP-----LSGKVTHD-----FQRpWRLSL---EQLQKLVAE-------EWQRNNTDLLSegeddsgrttaeiI 106
                 44566789***************87775.....56666666.....222233333...223333333.......2333222222211133333444553 PP

      AAA_16 108 vpelagaea.......srllellkrllallsrder............plvlvlD.dlqwadeaslql.laaLlrlles 164
                 ++++++a++         +  ll+r +++ls++e             p +l+lD  ++ +d +s++   a+L++l e+
  EHU01413.1 107 QDAVKDAARcerlaaqFGISSLLSRRFKYLSTGETrktllcqalmaqPDLLILDePFDGLDVDSRANlTATLATLHEA 184
                 333333333544555555555555555666665557777777777776455555258888877777634444444444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00018
      AAA_16  28 llsGesGvGKsslvrellralekd.......................g.gif.lrgkcdqlesaipy.............salaqalareellrqllde 88 
                  ++G+ G GKs+l+  +     +                        + g++  + +         +             s + + +   +l++++ d+
  EHU01413.1 290 HIIGPNGAGKSTLLSLVTGDHPQGysndltlfgirrgsgetiwdikqHiGYVsSSLH---------LdyrvsvnvrtvilSGFFDSI---GLYQAVSDR 376
                 689***********9999766666889999999999998666666664334422222.........222332233322324455555...666666666 PP

      AAA_16  89 aesaeleawrekleealaavpelagaea....srllellkrll..allsrderplvlvlDd.lqwadeaslqllaaLlrl 161
                 + + ++++w +      a         a    ++l    +rll  a++   ++p++l+lD+ lq +d+  +ql + +++ 
  EHU01413.1 377 QMA-LAQQWLALTGMDNA--M------AnapfHSLSWGQQRLLliARALV-KHPTLLILDEpLQGLDPLNRQLVRRFVDI 446
                 444.88888774333333..2......22244444444444444233333.89999999955***********9999987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00047      0.26       2      22 ..      32      52 ..      31      65 .. 0.81
   2 ?   -1.1   0.0       3.4   1.9e+03      62      84 ..     170     192 ..     131     218 .. 0.66
   3 !    8.5   0.1    0.0035         2       4      22 ..     291     309 ..     288     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00047
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 a+vG   +GKS+L +al+ge
  EHU01413.1 32 WAFVGANGSGKSSLARALSGE 52
                589****************98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1  62 eekglgkaflaleeadlillvvd 84 
                 ++ +l+ +++ l ead+ l++v 
  EHU01413.1 170 SRANLTATLATLHEADVTLVLVL 192
                 33467777777788888777763 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0035
                 EEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   4 ivGrpNvGKStLinaltge 22 
                 i+G   +GKStL++  tg+
  EHU01413.1 291 IIGPNGAGKSTLLSLVTGD 309
                 89************99986 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   8.6e-05     0.048      27      88 ..     130     178 ..     117     180 .. 0.69
   2 ?    4.1   0.0     0.098        55      62      84 ..     418     440 ..     400     445 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.6e-05
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 sr+++ lS+Ge++++    l+ al            +++l++LDE F++lD +s+a+l ++l
  EHU01413.1 130 SRRFKYLSTGETRKT---LLCQALM----------AQPDLLILDEPFDGLDVDSRANLTATL 178
                 555566666666222...2222222..........24899****************998877 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.098
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                 +++ l++LDE  ++lD+ +++ +
  EHU01413.1 418 KHPTLLILDEPLQGLDPLNRQLV 440
                 5789************9888765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.6e-05     0.054       3      69 ..      33     115 ..      31     124 .. 0.66
   2 ?    6.4   0.0     0.017       9.5       4      20 ..     291     307 ..     289     316 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.6e-05
      AAA_28   3 vitGgestGKTtlleaLa..............argypvvpEaareileeklakgedalpwv..edllafaervleeqleeeaa 69 
                 +++G+ ++GK++l++aL+              +r ++   E   +++ e++++++ +l ++  +d  +  +++++ +++++a+
  EHU01413.1  33 AFVGANGSGKSSLARALSgelpplsgkvthdfQRPWRLSLEQLQKLVAEEWQRNNTDLLSEgeDDSGRTTAEIIQDAVKDAAR 115
                 89****************77777666653333334445577777777777765555554444556666666677766666665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.017
      AAA_28   4 itGgestGKTtlleaLa 20 
                 i+G+ ++GK+tll+  +
  EHU01413.1 291 IIGPNGAGKSTLLSLVT 307
                 8***********98765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.003       1.7      42      69 ..      24      51 ..      12      61 .. 0.84
   2 ?    4.3   0.0     0.052        29      22     136 ..      62     180 ..      50     198 .. 0.64
   3 ?    3.2   0.0      0.12        65      42      63 ..     280     302 ..     269     309 .. 0.80
   4 ?    0.6   0.0      0.73   4.1e+02     103     132 ..     413     445 ..     401     456 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.003
   IstB_IS21 42 sfiekkenivllGpsGvGKshlaialgv 69
                 ++++ e  +++G  G GKs la al+ 
  EHU01413.1 24 VHLRRGERWAFVGANGSGKSSLARALSG 51
                46889999*****************975 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.052
   IstB_IS21  22 idfraarsldkrkvkeLatlsfiekkenivllGpsGvGKsh...laialgveavraglsvlfvrvedLveelkrarrdgklaral.kr.llkvdllilD 115
                  df+    l+ +++++L++ ++ +++  ++  G    G++    +  a+  +a  + l+  f   + L ++ k   + +  ++ l ++ ++++dllilD
  EHU01413.1  62 HDFQRPWRLSLEQLQKLVAEEWQRNNTDLLSEGEDDSGRTTaeiIQDAVKDAARCERLAAQFGISSLLSRRFKYLSTGETRKTLLcQAlMAQPDLLILD 160
                 678888889999999999999999999999999999999851112233333333344555565555555666655444444444413313456999999 PP

   IstB_IS21 116 dlgllpldqaeaellfeviek 136
                 +  +  ld +++++l   ++ 
  EHU01413.1 161 EP-FDGLDVDSRANLTATLAT 180
                 84.555566666666555555 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.12
   IstB_IS21  42 sf.iekkenivllGpsGvGKshl 63 
                 ++ ++  e   ++Gp G+GKs l
  EHU01413.1 280 NWqVNPGEHWHIIGPNGAGKSTL 302
                 55456678889*********987 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.73
   IstB_IS21 103 lkrllkv.dllilDd..lgllpldqaeaellfe 132
                 +++l+k  +llilD+   gl pl+++  + + +
  EHU01413.1 413 ARALVKHpTLLILDEplQGLDPLNRQLVRRFVD 445
                 555555449*****9555888888776665555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00012     0.066      19      85 ..      15      82 ..       6      93 .. 0.77
   2 ?   -2.2   0.0       4.4   2.5e+03      22      55 ..     121     152 ..     116     155 .. 0.80
   3 ?    3.6   0.0     0.077        43      31      55 ..     284     308 ..     267     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
       AAA_7 19 tvrysyllelllknkkpvllvGptGtGKtviikdllkkldk.ekylsltinfsaqtsanqlqdiiesk 85
                 +r+  l + +l+++    +vG  G+GK+++++ l  +l++ +  +++ ++   + s +qlq+++ ++
  EHU01413.1 15 DTRVLSLADVHLRRGERWAFVGANGSGKSSLARALSGELPPlSGKVTHDFQRPWRLSLEQLQKLVAEE 82
                57888999**************************9999984144445555666666677777666655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.4
       AAA_7  22 ysyllelllknkkpvllvGptGtGKtviikdllk 55 
                  ++ ++ ll+++ + l +G+t   Kt++++ l+ 
  EHU01413.1 121 AQFGISSLLSRRFKYLSTGET--RKTLLCQALMA 152
                 567788999999999999998..89999988776 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.077
       AAA_7  31 knkkpvllvGptGtGKtviikdllk 55 
                 + + +  ++Gp G GK+++++ ++ 
  EHU01413.1 284 NPGEHWHIIGPNGAGKSTLLSLVTG 308
                 56778889**********9886655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.9e-05      0.05       2     135 ..      33     190 ..      33     196 .. 0.67
   2 ?    3.4   0.0      0.13        74       3      22 ..     291     310 ..     290     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.9e-05
                 EEEEBTTTTHHHHHHHHHTS--S---SSS--...-S-EEEEECCT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS....... CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptT...rrplelqlgeeeeaseravkeelkek.ekkledfsevreeieketekiagankgiskk....... 89 
                 a+vG+  sGKSS++ aL ge   p  ++ +T   +rp  l+l++ ++   ++++ ++ +  ++ ++d  + + ei +   k a ++++   +       
  EHU01413.1  33 AFVGANGSGKSSLARALSGEL--PPLSGKVThdfQRPWRLSLEQLQKLVAEEWQRNNTDLlSEGEDDSGRTTAEIIQDAVKDAARCERLAAQfgissll 129
                 689****************97..5555555533468999999998885533333333333655555555555555555555554555555556666668 PP

                 .............-EEEEEEETTS-SEEEEE--..-B-SSSGTTSHHHHHHHSTTEEEEEE CS
   Dynamin_N  90 .............villkilsllvkgltlvDlP..Gldsvnkrdqelvkeyikkadiilav 135
                               +ll+     +++l ++D P  Gld     +   +  ++++ad+ l++
  EHU01413.1 130 srrfkylstgetrKTLLCQALMAQPDLLILDEPfdGLDVDSRANLTATLATLHEADVTLVL 190
                 8888888888877677777777777888888777777777777777777777777777766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
                 EEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlged 22 
                 ++G   +GKS++l  ++g++
  EHU01413.1 291 IIGPNGAGKSTLLSLVTGDH 310
                 68999********9988876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00012     0.069      26      59 ..      33      66 ..      22      86 .. 0.83
   2 ?    2.3   0.0      0.16        92      25      42 ..     289     306 ..     281     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
  Mg_chelatase 26 llvGppGsGKtmlakrlpsllpplseeealevak 59
                   +vG+ GsGK+ la++l++ lppls + +++ ++
    EHU01413.1 33 AFVGANGSGKSSLARALSGELPPLSGKVTHDFQR 66
                  589*********************9887777665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                     ++Gp G+GK+ l + +
    EHU01413.1 289 WHIIGPNGAGKSTLLSLV 306
                   4579********997755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00098      0.55       4      32 ..      35      65 ..      33     137 .. 0.68
   2 ?    4.8   0.0      0.07        39       3      18 ..     291     306 ..     290     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00098
      AAA_18  4 tGtpGvGKttlakeLskrl.gf.gvnlrdva 32
                 G+ G+GK++la++Ls +l  + g +  d  
  EHU01413.1 35 VGANGSGKSSLARALSGELpPLsGKVTHDFQ 65
                6999***********9887555533333333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.07
      AAA_18   3 ltGtpGvGKttlakeL 18 
                 + G+ G+GK+tl   +
  EHU01413.1 291 IIGPNGAGKSTLLSLV 306
                 78*********98765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0014      0.79       3      32 ..      34      73 ..      32     202 .. 0.75
   2 ?    4.0   0.0      0.11        63       3      20 ..     291     308 ..     290     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0014
                EESSTTSSHHHHHHHHHHHH..........THEEEEEETT CS
         AAA  3 lyGppGtGKTllakavakel..........gvefleisgs 32
                ++G  G GK++la+a+  el           ++  ++s+ 
  EHU01413.1 34 FVGANGSGKSSLARALSGELpplsgkvthdFQRPWRLSLE 73
                79*****************755554333321222333333 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.11
                 EESSTTSSHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavak 20 
                 ++Gp G GK++l + v  
  EHU01413.1 291 IIGPNGAGKSTLLSLVTG 308
                 68**********998865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0016      0.89      25      54 ..      21      50 ..       8     191 .. 0.91
   2 ?    3.3   0.0     0.097        54      38      51 ..     291     304 ..     279     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0016
      AAA_25 25 lvkgllpagelallaGapgtGKttlaldla 54
                l + +l++ge  +++Ga g+GK+ la  l+
  EHU01413.1 21 LADVHLRRGERWAFVGANGSGKSSLARALS 50
                6677999******************98776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.097
      AAA_25  38 laGapgtGKttlal 51 
                 ++G+ g+GK+tl++
  EHU01413.1 291 IIGPNGAGKSTLLS 304
                 78**********86 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.032        18      32      48 ..      35      51 ..      24      81 .. 0.87
   2 !    8.3   0.0    0.0028       1.5      31      44 ..     291     304 ..     279     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.032
      AAA_27 32 yGpNEAGKstalrAisd 48
                +G+N +GKs++ rA+s 
  EHU01413.1 35 VGANGSGKSSLARALSG 51
                7*************985 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0028
      AAA_27  31 iyGpNEAGKstalr 44 
                 i+GpN AGKst+l+
  EHU01413.1 291 IIGPNGAGKSTLLS 304
                 67*********997 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.14        77      15      38 ..      27      50 ..      19      64 .. 0.81
   2 !   10.0   0.0   0.00079      0.44      16      46 ..     285     315 ..     274     319 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.14
  Ploopntkinase1 15 argelyyvkgsngsgkstvpsyla 38
                     rge +   g+ngsgks++   l+
      EHU01413.1 27 RRGERWAFVGANGSGKSSLARALS 50
                    589999999********9877665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00079
  Ploopntkinase1  16 rgelyyvkgsngsgkstvpsylaekdpeayv 46 
                      ge +++ g ng+gkst+ s ++   p+ y 
      EHU01413.1 285 PGEHWHIIGPNGAGKSTLLSLVTGDHPQGYS 315
                     58999***********************996 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1        56      18      36 ..      30      48 ..      22      50 .. 0.80
   2 ?    9.5   0.0   0.00027      0.15      13      37 ..     282     306 ..     273     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
     DUF3584 18 ghtnieGtNaaGKTtLlrL 36
                ++   +G+N++GK +L r 
  EHU01413.1 30 ERWAFVGANGSGKSSLARA 48
                666789**********996 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
     DUF3584  13 eldldghtnieGtNaaGKTtLlrLi 37 
                 ++++ +h +i G N+aGK tLl+L+
  EHU01413.1 282 QVNPGEHWHIIGPNGAGKSTLLSLV 306
                 578899*****************98 PP

>> HopA1  HopA1 effector protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.31   1.7e+02     126     156 ..     134     161 ..      99     174 .. 0.79
   2 ?   10.1   0.0   0.00088       0.5     124     158 ..     398     429 ..     388     447 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.31
                 --S-HHHHHHHHHHHHHH-.-SS-HHHHHHH CS
       HopA1 126 dsesfGqhRaqiiAkALveadaeerlkaire 156
                 + +s G+ R  ++++AL++   ++ l +++e
  EHU01413.1 134 KYLSTGETRKTLLCQALMA---QPDLLILDE 161
                 66899*************9...344555555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00088
                 .T--S-HHHHHHHHHHHHHH-.-SS-HHHHHHHHH CS
       HopA1 124 ggdsesfGqhRaqiiAkALveadaeerlkaireql 158
                    s+s Gq+R  +iA+ALv++   + l +++e l
  EHU01413.1 398 PFHSLSWGQQRLLLIARALVKH---PTLLILDEPL 429
                 45899****************5...3333333333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0031       1.7       5      57 ..      34      90 ..      30     181 .. 0.74
   2 ?    5.6   0.0     0.024        13       5      21 ..     291     307 ..     288     323 .. 0.79
   3 ?   -0.7   0.0       2.1   1.2e+03      72      91 ..     410     433 ..     373     462 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
                EEC-TTTCHHHHHHHHHHHHC..TS-SCCCC-SEEEEEETTTTTTS-......-HCHH CS
       NACHT  5 lqGeaGsGKTtLlqklalawa..egklpqgafklvFflslrelsrsgna...rsladl 57
                  G++GsGK+ L++ l  ++   +gk  ++ f+ +  lsl +l++  ++   r   dl
  EHU01413.1 34 FVGANGSGKSSLARALSGELPplSGKVTHD-FQRPWRLSLEQLQKLVAEewqRNNTDL 90
                68*************998875325565555.677776666666665444555555555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.024
                 EEC-TTTCHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqkla 21 
                 + G++G GK+tLl  + 
  EHU01413.1 291 IIGPNGAGKSTLLSLVT 307
                 89**********97665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.1
                 CHHHHCCSCCCEEEEEE....-ST CS
       NACHT  72 vwavllelperlLlilD....glD 91 
                   + ++ +++ +LlilD    glD
  EHU01413.1 410 LLIARALVKHPTLLILDeplqGLD 433
                 445555666667788874444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.016       8.9       3      22 ..      34      53 ..      32      67 .. 0.86
   2 ?    5.5   0.0     0.039        22       2      19 ..     290     307 ..     289     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.016
  RNA_helicase  3 lyGpsgeGKStlakeLakal 22
                  ++G++g GKS+la+ L+ +l
    EHU01413.1 34 FVGANGSGKSSLARALSGEL 53
                  89************987665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.039
  RNA_helicase   2 wlyGpsgeGKStlakeLa 19 
                    + Gp+g GKStl   ++
    EHU01413.1 290 HIIGPNGAGKSTLLSLVT 307
                   589*********988754 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0076       4.3      22      41 ..      35      54 ..      32     112 .. 0.78
   2 ?    4.4   0.0     0.035        20      23      41 ..     293     311 ..     290     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0076
  Zeta_toxin 22 gGqpGAGKselaellkdele 41
                +G+ G+GKs+la++l  el 
  EHU01413.1 35 VGANGSGKSSLARALSGELP 54
                699************99986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.035
  Zeta_toxin  23 GqpGAGKselaellkdele 41 
                 G  GAGKs+l++l++ ++ 
  EHU01413.1 293 GPNGAGKSTLLSLVTGDHP 311
                 778**********998884 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0078       4.4      23      38 ..      36      51 ..      29      79 .. 0.88
   2 ?    2.8   0.0     0.065        36      21      35 ..     291     305 ..     285     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0078
      AAA_13 23 GwNGaGKTtLSrllrs 38
                G+NG+GK++L+r+l+ 
  EHU01413.1 36 GANGSGKSSLARALSG 51
                9***********9985 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.065
      AAA_13  21 iYGwNGaGKTtLSrl 35 
                 i G NGaGK+tL +l
  EHU01413.1 291 IIGPNGAGKSTLLSL 305
                 679********9655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.075        42      24      47 ..      33      56 ..      26     180 .. 0.71
   2 ?    4.4   0.0     0.032        18      24      45 ..     290     311 ..     271     316 .. 0.77
   3 ?   -3.7   0.0       9.9   5.5e+03      95     110 ..     411     426 ..     400     427 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.075
                EEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC 24 alvGmgGvGKttlakqilnksdev 47
                a+vG  G+GK+ la+    ++  +
  EHU01413.1 33 AFVGANGSGKSSLARALSGELPPL 56
                679999999999999877665544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.032
                 EEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC  24 alvGmgGvGKttlakqilnksd 45 
                  + G  G GK+tl++ +  ++ 
  EHU01413.1 290 HIIGPNGAGKSTLLSLVTGDHP 311
                 689***********99987765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.9
                 HHHHHCCCTTEEEEEE CS
      NB-ARC  95 klvrlLltkrfllvlD 110
                  + r+L ++ +ll+lD
  EHU01413.1 411 LIARALVKHPTLLILD 426
                 588999999******9 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.097        54       5      22 ..      32      49 ..      28      58 .. 0.82
   2 ?    5.5   0.0     0.022        12       7      22 ..     291     306 ..     288     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.097
      AAA_24  5 iliyGpsgiGKTtlakel 22
                 + +G +g+GK++la+ l
  EHU01413.1 32 WAFVGANGSGKSSLARAL 49
                5679***********987 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.022
      AAA_24   7 iyGpsgiGKTtlakel 22 
                 i+Gp+g+GK+tl++  
  EHU01413.1 291 IIGPNGAGKSTLLSLV 306
                 89*********99865 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0095       5.3      59      76 ..      35      52 ..      29      85 .. 0.90
   2 ?    2.0   0.0      0.17        98      52      93 ..     285     329 ..     277     345 .. 0.66
   3 ?   -2.7   0.0       4.7   2.6e+03     190     231 ..     367     408 ..     359     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0095
      DUF815 59 wGarGtGKSslvkallne 76
                +Ga G+GKSsl +al  e
  EHU01413.1 35 VGANGSGKSSLARALSGE 52
                8*************9876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.17
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg...Lrlievekedlk 93 
                 p ++  ++G  G+GKS+l+  ++ +  +     L l  +++ + +
  EHU01413.1 285 PGEHWHIIGPNGAGKSTLLSLVTGDHPQGYsndLTLFGIRRGSGE 329
                 66777789********98766654433222333777666666555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.7
      DUF815 190 lgFykldqeeYleiveklakklglelekeeleeeAlewaler 231
                 +g y++  ++ +++ +++++ +g++ + +++  ++l+w ++r
  EHU01413.1 367 IGLYQAVSDRQMALAQQWLALTGMDNAMANAPFHSLSWGQQR 408
                 677888888899999999999999999999999999998887 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.11        63       2      17 ..      35      50 ..      34      61 .. 0.85
   2 ?   -1.7   0.0       3.6     2e+03     146     169 ..     175     198 ..     168     215 .. 0.80
   3 ?    5.0   0.0     0.033        19       1      16 [.     291     306 ..     291     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
  ATP_bind_1  2 vGpaGsGKttfvgals 17
                vG  GsGK+++ +als
  EHU01413.1 35 VGANGSGKSSLARALS 50
                8**********99998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.6
  ATP_bind_1 146 lsalsamlrlelPhvvvlnkfDll 169
                  ++l+++ +++++ v vln+fD +
  EHU01413.1 175 TATLATLHEADVTLVLVLNRFDDI 198
                 567888889999999****99965 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.033
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 ++Gp G+GK+t+ + +
  EHU01413.1 291 IIGPNGAGKSTLLSLV 306
                 79*********99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 3332.09
//
Query:       EHU01414.1  [L=260]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-23   82.2   5.7    1.8e-12   47.4   0.5    2.8  3  TOBE        TOBE domain
    3.3e-13   49.4   0.4    8.9e-13   48.0   0.1    2.0  2  HTH_1       Bacterial regulatory helix-turn-helix protein, ly
  ------ inclusion threshold ------
       0.07   13.3   0.1       0.21   11.8   0.0    1.9  2  TOBE_2      TOBE domain
       0.14   12.0   2.3       0.35   10.7   0.2    2.5  3  Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain


Domain annotation for each model (and alignments):
>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.78   3.5e+03      27      39 ..      58      69 ..      57      71 .. 0.71
   2 !   47.4   0.5     4e-16   1.8e-12       1      63 [.     124     187 ..     124     188 .. 0.98
   3 !   36.8   0.1   7.8e-13   3.5e-09       1      62 [.     193     254 ..     193     256 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.78
        TOBE 27 lgggatLtArvtr 39
                l+g++ ++Ar t+
  EHU01414.1 58 LAGQE-VVARATG 69
                66777.8888886 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 4e-16
        TOBE   1 ssarNqlpgtVvvveplgseveVrvdlggga.tLtArvtrrsaeeLgLapGeeVfalikaakvh 63 
                 +sarNql gtVv+  ++++   +++ l++g   L   +t+rsae+L L++G+eV +lika +v 
  EHU01414.1 124 TSARNQLFGTVVHNDAQQVIQHLTILLADGVtRLNIALTERSAERLNLHAGKEVLVLIKAPWVS 187
                 7*************************************************************96 PP

  == domain 3  score: 36.8 bits;  conditional E-value: 7.8e-13
        TOBE   1 ssarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 ++a+Nql +t +++e ++  +eV ++l+ g+tL+A+++ r  e+ +L++G++V a++ a+  
  EHU01414.1 193 TDAENQLAATLTAIEKGQQVSEVLMTLPSGETLCATLDNRETEQRQLHIGMNVIASFSASHA 254
                 689******************************************************99865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1     2e-16   8.9e-13       2      60 .]      20      83 ..      19      83 .. 0.92
   2 ?   -3.0   0.0       1.7   7.4e+03      41      53 ..     157     169 ..     155     171 .. 0.55

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 2e-16
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.....EEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.....lrLTeaGe 60
                r+++l++ v ++gs+++ A+  g+s+++++++i++++++ g++ + R ++g     ++LT +Ge
  EHU01414.1 20 RRIALLQRVQQTGSISQGAKLAGISYKSAWDAISDMNHLAGQEVVARATGGkggggAQLTRYGE 83
                7999*******************************************665445567******97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                 HTS-SEEESSSEE CS
       HTH_1  41 lgvpLfeRtgrgl 53 
                 l+  L eR+  +l
  EHU01414.1 157 LNIALTERSAERL 169
                 5556666655544 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.2   1.4e+04      14      25 ..     125     136 ..     119     139 .. 0.72
   2 ?   11.8   0.0   4.7e-05      0.21      11      75 ..     189     256 ..     166     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.2
      TOBE_2  14 gganglsGtVed 25 
                 +++n+l GtV++
  EHU01414.1 125 SARNQLFGTVVH 136
                 445788899976 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.7e-05
      TOBE_2  11 a..aagganglsGtVedveylGsstryvvelaggqlvvvrqpnadr.dsalapGdtVelswdpddavv 75 
                 +  + +++n+l++t + +e     ++++ +l++g+ + +  +n++  +++l +G  V  s+++ +a+v
  EHU01414.1 189 HtaPTDAENQLAATLTAIEKGQQVSEVLMTLPSGETLCATLDNRETeQRQLHIGMNVIASFSASHAIV 256
                 35344556899***99999776778899****************9999*****************987 PP

>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   7.8e-05      0.35      73     102 ..      54      84 ..       5      88 .. 0.69
   2 ?   -1.7   0.0      0.51   2.3e+03      27      51 ..     110     135 ..      93     175 .. 0.56
   3 ?   -0.5   0.0      0.21   9.5e+02       2      19 ..     214     231 ..     212     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.8e-05
  Sde2_N_Ubi  73 ds.ellslrllvrlrGGKGGFGSqLRaaggr 102
                 d  +l   ++++r +GGKGG G qL   g r
  EHU01414.1  54 DMnHLAGQEVVARATGGKGGGGAQLTRYGER 84 
                 33355667899**************877766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.51
  Sde2_N_Ubi  27 vsdlvdklserlpeslkes.liLttv 51 
                 + +l++++++ + ++ +++ l+ t+v
  EHU01414.1 110 LDSLLAAIARSSLQTSARNqLFGTVV 135
                 44455555444333333332222222 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.21
  Sde2_N_Ubi   2 nvlvssfdgltlpstlsl 19 
                 +vl+++ +g tl++tl  
  EHU01414.1 214 EVLMTLPSGETLCATLDN 231
                 699999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1900.60
//
Query:       EHU01415.1  [L=51]
Description: putative outer membrane/exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-29  100.1   1.3    3.9e-29   99.9   1.3    1.0  1  AcrZ         Multidrug efflux pump-associated protein AcrZ
  ------ inclusion threshold ------
       0.09   12.9   2.7       0.11   12.6   2.7    1.1  1  Insulin_TMD  Insulin receptor trans-membrane segment
       0.24   11.3   2.1       0.29   11.1   2.1    1.1  1  SecE         SecE/Sec61-gamma subunits of protein translocati


Domain annotation for each model (and alignments):
>> AcrZ  Multidrug efflux pump-associated protein AcrZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   1.3   6.5e-33   3.9e-29       1      47 [.       1      47 [.       1      48 [. 0.97

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 6.5e-33
        AcrZ  1 MlELLksLvvaviMvPvvmAiiLglIygLGEvfNviSkiGhrkesee 47
                MlEL+ksL+vaviMvPvvmAi+LglIygLGEvfN+iSk+G+r++ ++
  EHU01415.1  1 MLELIKSLAVAVIMVPVVMAIMLGLIYGLGEVFNLISKTGRRDNTNA 47
                9******************************************9875 PP

>> Insulin_TMD  Insulin receptor trans-membrane segment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.7   1.8e-05      0.11      14      34 ..       9      29 ..       4      39 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
  Insulin_TMD 14 ivkIvigPviciillllviga 34
                  v+++++Pv+++i+l l+ g 
   EHU01415.1  9 AVAVIMVPVVMAIMLGLIYGL 29
                 689************999764 PP

>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   4.9e-05      0.29      21      54 ..       3      36 ..       3      37 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.9e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE 21 EllkttvvVlvfvvimglflflvDlvfsklinll 54
                El+k+ +v +++v +++++  ++ ++++ ++nl+
  EHU01415.1  3 ELIKSLAVAVIMVPVVMAIMLGLIYGLGEVFNLI 36
                5666666666666555555555557999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 382.56
//
Query:       EHU01416.1  [L=257]
Description: periplasmic substrate-binding component of an ABC superfamily molybdate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-46  159.5   3.9    1.3e-46  159.2   3.9    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    4.5e-16   59.7   1.6    6.6e-16   59.1   1.6    1.3  1  SBP_bac_1   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.019   14.4   1.0        0.2   11.0   0.2    2.2  2  SBP_bac_6   Bacterial extracellular solute-binding protein
       0.15   10.4   0.0        0.2   10.0   0.0    1.1  1  FMO-like    Flavin-binding monooxygenase-like


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   3.9   2.8e-50   1.3e-46       1     229 [.      28     253 ..      28     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 2.8e-50
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-......TT-- CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgn......pkki 93 
                 +tv+aa+sl+ al+++aa +++ +g +v+ s+++s+ larqi++ga++D++i+a++ w+++++a+  +   ++ +l ++ lv+++p++        +++
  EHU01416.1  28 ITVFAAASLTNALNDIAAHYKKTHGTEVVSSFASSSVLARQIEQGAPADLFISADQQWMDDAVAKKSMIDTTRYTLLGNDLVLIAPRSEnarpvtINDK 126
                 79***********************************************************987766666******************96663322467 PP

                 -SHHHHHHSS--EEEE--T-TTTTHH.HHHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEE.E--TTT--.. CS
  SBP_bac_11  94 kgwadLlkpglklavadPttspsGlaalalleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleav.ylpeglnldp 191
                 ++w+ Llk + +lav dP + p+G +a+++le++g    + +l+   +  ++++r +l+ ve++e  +givy s+a    +++k+++v + pe+ + +p
  EHU01416.1 127 TDWKRLLKGE-RLAVGDPDHVPAGIYAKEALEKLG---AWSSLSPVLA-RANNVRAALALVERNETPYGIVYGSDAV---ASQKVQVVgTFPEDSH-KP 216
                 7899999977.9***********************...99**998776.899************************9...7***************.7* PP

                 .EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 192 ldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 ++yp+a++k+  +++a +aF+++L++pea a++++yGf
  EHU01416.1 217 VEYPVAIVKDH-DNAAVKAFYNYLKGPEAAAVFTQYGF 253
                 *********98.778*********************** PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   1.6   1.5e-19   6.6e-16       2     314 ..      34     245 ..      33     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.5e-19
                 GSHHHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTH CS
   SBP_bac_1   2 gsltegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlp 99 
                 +slt+  al+ ++ + ++k+h g +V+  + +s+ la     +i++G+ paD++++ d  w+++ + ++  ++ + y+   +  +              
  EHU01416.1  34 ASLTN--ALNDIA-AHYKKTH-GTEVVSSFASSSVLAR----QIEQGA-PADLFISaDQQWMDDAVAKKSMIDTTRYTLLGNDLVLIA----------- 112
                 78999..******.*****99.****************....******.88*****99999998888877777777777776555442........... PP

                 HHHCEEEESEEEEE.EEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHH CS
   SBP_bac_1 100 kildskvlyvPlya.argliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaa 197
                           P  + ar++ +          + ++ W+ l++  + ++++    ++g++ + a+ +++++                             
  EHU01416.1 113 ----------PRSEnARPVTI----------NDKTDWKRLLKGERLAVGDPDHVPAGIYAKEALEKLGAWS---------------------------- 163
                 ..........22223566666..........55679**********************************9............................ PP

                 HHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCS CS
   SBP_bac_1 198 tylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsk 296
                                l+++ a   +++aalal+e+ e++ +iv++++a a+ kv   + f++d++kp                    + y++ai+k+ +
  EHU01416.1 164 --------------SLSPVLARANNVRAALALVERNETPYGIVYGSDAVASQKVQVVGTFPEDSHKP--------------------VEYPVAIVKDHD 228
                 ..............9****************************************************....................89********** PP

                 THHHHHHHHHHHTSHHHH CS
   SBP_bac_1 297 npeaAkkFldfllspeaq 314
                 n +a+k+F ++l +pea+
  EHU01416.1 229 N-AAVKAFYNYLKGPEAA 245
                 *.99************97 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.031   1.4e+02       3      24 ..      74      95 ..      72     130 .. 0.83
   2 ?   11.0   0.2   4.5e-05       0.2     126     217 ..     171     255 ..     117     257 .] 0.73

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.031
   SBP_bac_6  3 lpdlilsfdkdflekfieeglf 24
                 +dl++s d+++++ +++++  
  EHU01416.1 74 PADLFISADQQWMDDAVAKKSM 95
                59**************999866 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.5e-05
   SBP_bac_6 126 nlhpaqmvkaagslesgepavsvvpyffadilpekkkgknlkvvwPed..GalvspifmlvkkgkkkelakafidfllspevqailakaggvfP 217
                   ++++   a++ +e +e  ++ ++ + +d+++++k   ++  + Ped    + +p+++++ ++  ++ +kaf ++l +pe++a+++  g+  P
  EHU01416.1 171 RANNVR--AALALVERNE--TPYGIVYGSDAVASQK--VQVVGTFPEDshKPVEYPVAIVKDHD--NAAVKAFYNYLKGPEAAAVFTQYGF-TP 255
                 444444..5566667777..9999999999999997..57777799994334455555555555..9999****************99988.55 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   4.4e-05       0.2     190     243 ..      35      88 ..      20     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.4e-05
    FMO-like 190 GlGnsggdiavelsrtaeqvllstrsGswvlsrvsdsGypwdmllvtrfksllk 243
                  l n+  dia+   +t    ++s+ + s vl+r +++G p d+++++  + +  
  EHU01416.1  35 SLTNALNDIAAHYKKTHGTEVVSSFASSSVLARQIEQGAPADLFISADQQWMDD 88 
                 588999*************************************99887666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2017.43
//
Query:       EHU01417.1  [L=231]
Description: membrane component of an ABC superfamily molybdate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-24   84.5  13.4    8.8e-24   84.2  13.4    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.064   13.0   0.9        0.2   11.4   0.1    2.0  2  DUF975        Protein of unknown function (DUF975)
       0.49   11.0   1.9         26    5.5   0.2    2.4  2  Candida_ALS   Candida agglutinin-like (ALS)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2  13.4   1.5e-27   8.8e-24       2     183 ..      26     227 ..      25     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.5e-27
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   +++Gil+a   ++  ++++ ll+++i ++l lP++v++ ll+  +             +  ++ +++ ++++++++ a+p++++ +r al++++  l
    EHU01417.1  26 LPFGILMAwvlVRCQFPGKALLDGVIHLPLVLPPVVVGYLLLIGLgrrgfigeklyeWFGFSFAFSWRGAALASAVIAFPLMVRAIRLALDAVDIRL 122
                   79**************************************99777********9998555578889999**************************** PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis......nggvlalviavlllnlvadi 174
                   ++aar+lGa+rw++f++++lP++lp ii g +laf+++lg++ ++ ++ s+   g +++ ++ +y + e+       + + +++v++ l+ +lv+ +
    EHU01417.1 123 EQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNI-PGETRTLPLAMYTLIETPgaegaaARLCVIAVVLALASLLVSEW 218
                   ******************************************8887777665.45555555555555555555777655566666666666677777 PP

  BPD_transp_1 175 lqrlldprv 183
                   l+++  +r+
    EHU01417.1 219 LAQWGRKRM 227
                   777766665 PP

>> DUF975  Protein of unknown function (DUF975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.4e-05       0.2     198     227 ..       8      37 ..       4      43 .. 0.93
   2 ?   -0.1   0.1      0.11   6.8e+02       9     164 ..     124     152 ..      96     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
      DUF975 198 wklfvLdLsfiGWliLviltlgiallyLlp 227
                 w+  +L L+  G ++L +l++gi++ ++l+
  EHU01417.1   8 WQAVMLSLQVSGIAVLCSLPFGILMAWVLV 37 
                 9**************************997 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
      DUF975   9 siakeklkgrwgnavLllLlillvevllsflisiietilvssllellivlllgtlltlsavfvviklvkrkekvelkeslasfkeknfiklLvllllke 107
                 + a++   grw  +  ++L++ l                                                                            
  EHU01417.1 124 QAARTLGAGRWRVFFTITLPLTL---------------------------------------------------------------------------- 146
                 34444555555555555555544............................................................................ PP

      DUF975 108 lflllwsliallglliiiislslallsseieenlvvvllvlliilllivlilaiive 164
                                                                    ++iiv+
  EHU01417.1 147 ---------------------------------------------------PGIIVG 152
                 ...................................................333322 PP

>> Candida_ALS  Candida agglutinin-like (ALS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1    0.0087        52      13      27 ..     138     154 ..     134     156 .. 0.85
   2 ?    5.5   0.2    0.0043        26       9      26 ..     162     180 ..     160     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0087
  Candida_ALS  13 tTtTit.agPG.gTgTV 27 
                  +T+T++ + PG   gTV
   EHU01417.1 138 FTITLPlTLPGiIVGTV 154
                  69********9555888 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0043
  Candida_ALS   9 GstttTtT.itagPGgTgT 26 
                  G ++ T+T +++ PG+T T
   EHU01417.1 162 GEFGATITfVSNIPGETRT 180
                  77889999666******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1692.38
//
Query:       EHU01418.1  [L=353]
Description: ATP-binding component of an ABC superfamily molybdate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-30  103.8   0.0    1.6e-29  103.1   0.0    1.3  1  ABC_tran     ABC transporter
    3.4e-16   59.3   0.3    4.3e-15   55.8   0.1    2.5  3  TOBE         TOBE domain
      6e-06   26.3   1.3      0.076   12.8   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00013   22.6   0.0    0.00019   22.0   0.0    1.2  1  AAA_23       AAA domain
    0.00065   19.2   0.4       0.62    9.5   0.7    2.2  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0013   18.5   0.0     0.0044   16.7   0.0    1.8  2  AAA_29       P-loop containing region of AAA domain
     0.0021   18.0   0.0     0.0059   16.5   0.0    1.7  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.041   14.0   0.2       0.08   13.0   0.2    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
      0.082   13.2   0.0       0.33   11.2   0.0    1.9  2  AAA_22       AAA domain
       0.19   10.5   0.5         14    4.3   0.0    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   9.2e-33   1.6e-29       4     136 ..      17     156 ..      15     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 9.2e-33
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsk 91 
                 +++++ ++ ++ai+G +GaGK++L++++ gl++p+ G+i+l ++ l +    + l+  ++++g+++qe++lfp+++vr n        ++ +++++++ 
  EHU01418.1  17 INVTVPANGITAIFGVSGAGKTSLINAIGGLTRPQRGRIQLHDRVLFDaeqqIALPPEKRNVGYVFQEARLFPHYRVRGNlryglaaSMKGQFDTLVDL 115
                 899***************************************9999888888899999****************************99999******** PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 lgl+ l d+       sLSgG+kqrva+ rall++p++ll+DEp 
  EHU01418.1 116 LGLEPLLDRFP----LSLSGGEKQRVAIGRALLSAPDILLMDEPL 156
                 *****999998....*****************************7 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.6   1.2e+04      19      34 ..      13      27 ..       9      28 .. 0.54
   2 ?    0.5   0.0      0.41   7.4e+02      10      35 ..     236     260 ..     235     264 .. 0.90
   3 !   55.8   0.1   2.4e-18   4.3e-15       1      62 [.     290     350 ..     290     352 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.6
        TOBE 19 seveVrvdlgggatLt 34
                 e e++v++++   +t
  EHU01418.1 13 HELEINVTVPANG-IT 27
                4556666666655.55 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.41
        TOBE  10 tVvvveplgseveVrvdlgggatLtA 35 
                 +V v+e++    +  + lg+++ +++
  EHU01418.1 236 RVQVLEHHPDYPMTALSLGDQH-IWV 260
                 799999*99999999*******.997 PP

  == domain 3  score: 55.8 bits;  conditional E-value: 2.4e-18
        TOBE   1 ssarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 ss rN+lp+ Vv++ + g +veV +++g  + L+Ar+++++++eL ++p+++++a+ik+++v
  EHU01418.1 290 SSVRNVLPAQVVELIEVGDQVEVKLRIGISE-LWARISPWARDELNIRPEQWLYAQIKSVSV 350
                 79*****************************.****************************99 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   4.6e-05     0.082       1      25 [.      26      50 ..      26      82 .. 0.83
   2 !   12.8   0.0   4.3e-05     0.076     237     299 ..     129     189 ..      80     194 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl 25
                ++++ G  g+GK++L+ a+ +l r 
  EHU01418.1 26 ITAIFGVSGAGKTSLINAIGGLTRP 50
                79*****************999765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.3e-05
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSp 299
                 lS G k+  a+  all+a+   ++ll DEp ++L+  + r+l+  l k++++ ++ v+ ++HS 
  EHU01418.1 129 LSGGEKQRVAIGRALLSAP---DILLMDEPLASLDLPRKRELMPYLqKLAKQVDIPVLYVSHSL 189
                 6778887778888999999...9********************99966666689999*****94 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.1e-07   0.00019      14      39 ..      16      44 ..       4      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-07
      AAA_23 14 eidF...skgltlItGpNGaGKTTildAi 39
                ei+     +g+t+I+G  GaGKT++++Ai
  EHU01418.1 16 EINVtvpANGITAIFGVSGAGKTSLINAI 44
                555576789*******************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.7   0.00035      0.62      23      44 ..      23      44 ..      14      68 .. 0.90
   2 !    7.2   0.0    0.0017         3     136     194 ..     128     182 ..      73     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00035
                TSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAi 44
                ++++tai G  G+GK++l++Ai
  EHU01418.1 23 ANGITAIFGVSGAGKTSLINAI 44
                5689*****************9 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0017
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv 194
                 +LSgGek+ va+    A+   +   + l+De  a LD  + +++  +l++  k++ + v
  EHU01418.1 128 SLSGGEKQRVAIGR--ALL--SAPDILLMDEPLASLDLPRKRELMPYLQKLAKQVDIPV 182
                 699***99888743..332..3345899*********************9999865433 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.4e-06    0.0044      18      50 ..      20      52 ..      11      57 .. 0.82
   2 ?   -1.9   0.0       1.6   2.9e+03      38      52 ..      62      76 ..      61      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.4e-06
      AAA_29 18 eidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++  +g+t + G sG+GK++l+ Ai  l  p++
  EHU01418.1 20 TVPANGITAIFGVSGAGKTSLINAIGGLTRPQR 52
                455579******************988777765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
      AAA_29 38 llDAiqalLvpakkv 52
                l+DA q + +p++k+
  EHU01418.1 62 LFDAEQQIALPPEKR 76
                899*99999998854 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.3e-06    0.0059      98     124 ..      23      49 ..       5      60 .. 0.78
   2 ?   -2.3   0.0       2.1   3.7e+03      57      91 ..     160     193 ..     156     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.3e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpele 124
                  ++ ++++ G SG+GK++Lina+ + ++
   EHU01418.1  23 ANGITAIFGVSGAGKTSLINAIGGLTR 49 
                  46899****************987554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
                  GG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHH CS
  RsgA_GTPase  57 Dlleeeeeleelkeelealgyevllvsaktkegle 91 
                  Dl  ++e +  l++  ++++++vl+vs +  +++ 
   EHU01418.1 160 DLPRKRELMPYLQKLAKQVDIPVLYVSHS-LDEIL 193
                  67777776666777888999999999776.33444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   4.4e-05      0.08       3      21 ..      28      46 ..      26     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                ai+G + +GK++Lina+ g
  EHU01418.1 28 AIFGVSGAGKTSLINAIGG 46
                89**************965 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018      0.33       6      25 ..      25      44 ..      22      72 .. 0.88
   2 ?   -1.1   0.0       1.2   2.2e+03      94     127 ..     149     184 ..     118     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                gi++++G sG+GKT l++ +
  EHU01418.1 25 GITAIFGVSGAGKTSLINAI 44
                89**************9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
      AAA_22  94 lliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                 +l+ DE    l+   + e++ +L +l++  + ++++++
  EHU01418.1 149 ILLMDEPLAsLDlprKRELMPYLQKLAK--QVDIPVLY 184
                 5555553333555433566666666666..66666544 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.6     0.012        22     244     264 ..      24      44 ..      17      47 .. 0.91
   2 ?    4.3   0.0    0.0078        14     352     416 ..     146     207 ..     144     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.012
                 SSEEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 244 kGvtlIvGggfhGKsTLLeAl 264
                 +G+t+I G    GK+ L++A+
  EHU01418.1  24 NGITAIFGVSGAGKTSLINAI 44 
                 69******************9 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0078
                 -HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEE CS
  ABC_ATPase 352 AtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykp 416
                 A  +++ De +++l   +k+ + p+   +++l k++++ ++ v+ ++++ l++A+tv+++++ k+
  EHU01418.1 146 APDILLMDEPLASLDLPRKRELMPY---LQKLAKQVDIPVLYVSHSLDEILQLAETVLVLDHGKV 207
                 5556666666666655556555555...55677889************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2529.00
//
Query:       EHU01419.1  [L=272]
Description: pyridoxal phosphatase / fructose 1,6-bisphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-61  206.8   0.0      5e-61  206.7   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
    1.8e-13   50.6   0.0    2.4e-06   27.3   0.0    2.1  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
    5.5e-09   36.6   0.4     0.0049   17.2   0.0    3.1  3  Hydrolase    haloacid dehalogenase-like hydrolase
    5.8e-07   30.1   1.7     0.0092   16.4   0.0    3.2  3  HAD          haloacid dehalogenase-like hydrolase
      4e-05   23.6   0.0    9.3e-05   22.5   0.0    1.7  1  Hydrolase_6  Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.14   12.2   0.2         33    4.5   0.0    2.8  3  HAD_2        Haloacid dehalogenase-like hydrolase
       0.14   11.3   0.2       0.24   10.5   0.2    1.2  1  Lar_N        Lactate racemase N-terminal domain


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.0   1.9e-64     5e-61       1     255 []       6     267 ..       6     267 .. 0.98

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 1.9e-64
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE.ECTTTEEEEE--B-HHHHHHHHHHHHHTTCE CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali.ddekgkilykstiskedvkeiikllkennve 97 
                  ialDlDGTLl+ +k+i +++ eai +++++gikv+i TGR++ a++p+++ l+ld+p+i++NG++  d+  +k+l++++++ + + ++i+ l e++++
   EHU01419.1   6 IALDLDGTLLTPTKTILPQSTEAITQARKAGIKVIIVTGRHHCAIHPFYQTLNLDTPAICCNGTYLyDYPAKKVLAADPLDTDVAVRVIEMLDEHHIH 103
                  89************************************************************************************************ PP

                  EEEEESSEEEESTT........THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE.EES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-S CS
  Hydrolase_3  98 illytedkvyvlnk.......eksekkkkeeektkkkkeeidseeeledeeiakil.ilkdkekldelekelksklnklltitssskgyleimpkgvs 187
                   lly +d +++ ++        k+ ++   ++   + + ++  ++ +e ++i+k+    ++   l++++++ +++l+   ++  s++  +++ + g s
   EHU01419.1 104 GLLYVDDAMLYQTPtghvirtLKWSESLPPYQRPVFRQVDSLAQAAREAQSIWKFAlSHDNTAALQQFAQRTQDELGL--ACEWSWHDQVDVARGGNS 199
                  *********************99*********************************777888899999*******986..9***************** PP

                  HHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 188 KgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  Kg+ l ++++  ++++++viafGD+ N ++MLe +glgvAmgna++ +k+ A+ v+++n e G+a+ l
   EHU01419.1 200 KGKRLAQWVESVGLTMQDVIAFGDNYNGLSMLETVGLGVAMGNADDAIKARAKRVIGTNLETGIAETL 267
                  *****************************************************************875 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.4e-08   0.00014       3      74 ..       4      73 ..       2      83 .. 0.89
   2 !   27.3   0.0   9.3e-10   2.4e-06     101     212 ..     139     246 ..     120     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.4e-08
                EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE CS
        S6PP  3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyy 74
                ++++ dLD+tl+++ +  l +  e + ++++  ++++++TGR+  +    ++  nl +P +  +  Gt +y+
  EHU01419.1  4 RVIALDLDGTLLTPTKTILPQSTEAITQARKAGIKVIIVTGRHHCAIHPFYQTLNLDTPAI--CCNGTYLYD 73
                6899*****************9999999*******************************65..555776665 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 9.3e-10
                 HHT-TTEEE--GGG-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTS CS
        S6PP 101 laklpeLtlQpeeeqrehKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellig 199
                  +++  L+  + e q+ +K  + + +++ a+ l++  q+ ++ el   + +s++ ++Dv   + skg+ l+ + +  +l ++ ++  Gd  n  ++l++
  EHU01419.1 139 FRQVDSLAQAAREAQSIWK--FALSHDNTAA-LQQFAQR-TQDELGLACEWSWHDQVDVARGGNSKGKRLAQWVESVGLTMQDVIAFGDNYNGLSMLET 233
                 5677778777888888887..6677777777.8899999.8999******************************************************* PP

                 SSEEEE-TT--HH CS
        S6PP 200 nvlgVvVgnaqee 212
                   lgV +gna+ +
  EHU01419.1 234 VGLGVAMGNADDA 246
                 **********988 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.6    0.0023       5.9       2      25 ..       4      31 ..       3      32 .. 0.75
   2 !   12.1   0.0   6.7e-05      0.17     118     156 ..      20      58 ..      16     112 .. 0.78
   3 !   17.2   0.0   1.9e-06    0.0049     124     210 .]     143     235 ..     133     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0023
                SEEEEESBTTTBCHH....HHHHHHHHH CS
                xxxxxxxxxxxxxxx....xxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLttge....psvedvivs 25
                +++++D+dGTL+t +    p+ +++i +
  EHU01419.1  4 RVIALDLDGTLLTPTktilPQSTEAITQ 31
                79**********8886666666666655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.7e-05
                 HBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 118 kvkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                 ++ p   ea+ + ++agi+v+++tg ++   +   + l+
  EHU01419.1  20 TILPQSTEAITQARKAGIKVIIVTGRHHCAIHPFYQTLN 58 
                 5789999********************999998777776 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHT.TEEEEEEESSEH....HHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxx.xxxxxxxxxxxx....xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 124 aeavasLkaa.gievvlltgdnp....etaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                   + ++ ++a  i  + l+ dn     ++a+r+ ++lG +   + ++++d+   +  + + + + ++  +   ++v+++GD+ n++++l+ +g
  EHU01419.1 143 DSLAQAAREAqSIWKFALSHDNTaalqQFAQRTQDELGlACEWSWHDQVDVARGGNSKGKRLAQWVESVGLTMQDVIAFGDNYNGLSMLETVG 235
                 555555555545556667777775555778888888886666677777777779999********************************9765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.6      0.11   2.8e+02       2      12 ..       7      17 ..       6      22 .. 0.79
   2 !   16.4   0.0   3.6e-06    0.0092      85     130 ..      20      61 ..      15     103 .. 0.82
   3 !    9.9   0.0   0.00034      0.88     108     188 .]     165     232 ..     164     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
         HAD  2 lfDfDgTLldg 12
                 +D+DgTLl+ 
  EHU01419.1  7 ALDLDGTLLTP 17
                68******875 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.6e-06
         HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlat 130
                 ++ p+  e++ ++r+aG++v++v+g +   ++p+ + l+    l+t
  EHU01419.1  20 TILPQSTEAITQARKAGIKVIIVTGRHHCAIHPFYQTLN----LDT 61 
                 4559999*******************************9....666 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00034
         HAD 108 SgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                 +++l+++++++ +elg    la e   +d +      +g++++g    ++l++w +    g++  +v+a+GD ++ l +l+
  EHU01419.1 165 TAALQQFAQRTQDELG----LACEWSWHDQV---DVARGGNSKG----KRLAQWVES--VGLTMQDVIAFGDNYNGLSMLE 232
                 899*************....77743333222...4458899999....677775544..6667777********9999986 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.6e-08   9.3e-05       1      42 [.       6      48 ..       6     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.6e-08
                 EEEESTTTSEE.TTEE-TTHHHHHHHHHHTT-EEEEEE---SS CS
  Hydrolase_6  1 flfDidGvLwr.gdkaipgaaealnalraagkpvvllTNnssk 42
                 +++D+dG+L+   ++++p++ ea+++ r+ag++v+++T +   
   EHU01419.1  6 IALDLDGTLLTpTKTILPQSTEAITQARKAGIKVIIVTGRHHC 48
                 579*******9567789*********************76655 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.19   4.8e+02       3      17 ..       8      22 ..       6      31 .. 0.73
   2 ?    4.5   0.0     0.013        33      80     119 ..      21      60 ..      17      63 .. 0.86
   3 ?    3.8   0.0     0.021        55     141     173 ..     204     236 ..     196     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.19
       HAD_2  3 FDlDgTlldteelii 17
                 DlDgTll  +++i+
  EHU01419.1  8 LDLDGTLLTPTKTIL 22
                6******97666665 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.013
       HAD_2  80 pydgvkelLeeLkeagyklgivTsksreaveekleqlgie 119
                 ++++  e++ + ++ag+k+ ivT +++ a+  + + l+++
  EHU01419.1  21 ILPQSTEAITQARKAGIKVIIVTGRHHCAIHPFYQTLNLD 60 
                 578889999999************9999999888888875 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.021
       HAD_2 141 iekaleklklkkeeviyvGDsptDieaakkagi 173
                 +++++e+ +l+ ++vi +GD+ +++     +g+
  EHU01419.1 204 LAQWVESVGLTMQDVIAFGDNYNGLSMLETVGL 236
                 6778999***************99887666665 PP

>> Lar_N  Lactate racemase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   9.3e-05      0.24      63     101 ..      11      47 ..       3      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
       Lar_N  63 DiTRptpskiilpllleelkeagvkdeditilvAtGlHr 101
                 D T  tp+k+ilp+  e + +  ++++ i++++ tG H+
  EHU01419.1  11 DGTLLTPTKTILPQSTEAITQ--ARKAGIKVIIVTGRHH 47 
                 99*******************..999************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2108.05
//
Query:       EHU01420.1  [L=332]
Description: 6-phosphogluconolactonase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-88  295.8   0.0    5.9e-88  295.4   0.0    1.1  1  Lactonase  Lactonase, 7-bladed beta-propeller
    7.6e-06   25.7   0.0    0.00056   19.6   0.0    2.4  2  SGL        SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.038   13.1   0.2        4.3    6.3   0.0    2.4  3  DUF1513    Protein of unknown function (DUF1513)
      0.088   12.2   0.0       0.67    9.3   0.0    2.0  2  DUF4394    Domain of unknown function (DUF4394)


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.4   0.0   1.3e-91   5.9e-88       8     343 ..       7     327 ..       4     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: 295.4 bits;  conditional E-value: 1.3e-91
                 GS.SS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEET CS
   Lactonase   8 tk.geskgiytlkldtetgkltplelvaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnY 105
                 t   es++i++++l +++g lt l+ ++  ++++++++sp++++lY+  +  ++ +v af+i +d g+lt+ ++++  ++sp+h+s+d+ g++l+  +Y
  EHU01420.1   7 TAsPESQQIHVWQL-NDEGTLTLLQVTDIAGQVQPMVVSPKKDFLYVGVR--PDFRVLAFRIAQD-GTLTEAGQAP-LPGSPTHISTDHAGRFLFCGSY 100
                 444789********.99*******************************99..8**********99.9*********.9********************* PP

                 TTTEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEE..EEEEE-STT--EEEEEE-TTS CS
   Lactonase 106 sggsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkatgklte..pasvklppgsGPRHlaFhpdg 202
                 + ++vs+ p+ adg +++ sqv+           +  + +Hs+++d  ++ l+vp L  Dr+ +++l +++ +lt+  +++v++++g+GPRH+aFh++g
  EHU01420.1 101 NDACVSISPIGADGVPQAPSQVI-----------DGLAGCHSANIDNADSTLYVPALKQDRICLFNLGADG-QLTPhsQQQVTTAEGAGPRHMAFHANG 187
                 *********************99...........45788****************************7766.7**999999****************** PP

                 SEEEEEETTTTEEEEEEEE-TTTEEEEEEEEESS-TSS-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE-TT CS
   Lactonase 203 kiaYvvnELsstvsvfsydeatgaleelqtvstlpegftgknsaaeIrlspdgkflyvSnRgadsiavfavdeadgtltlveevstegkfPRdfaldps 301
                 ++aY vnEL+stv+v+s+++a+g++e +qt++++p++ftg+++aa+I+l+pdg+fly+++R++++i+vf+v+e++  lt  + ++te++ PR f++d++
  EHU01420.1 188 QYAYSVNELNSTVEVWSLKNAHGKMESVQTLDMMPPDFTGTRWAADIHLTPDGRFLYACDRTSSTITVFSVSEDGALLTVEGFQPTETQ-PRGFNIDHT 285
                 ***********************************************************************999999999999999777.********* PP

                 SSEEEEEETTTTEEEEEEEETTTTEEEEESEEEESSSEEEEE CS
   Lactonase 302 gklllvanqksdnvtvferdaetGkLtelgkdievgepvcvk 343
                 g++l++a+qks++++v+++ + +G+L+++g+++ ++ p++v+
  EHU01420.1 286 GQYLVAAGQKSHHIEVYRITQPQGQLEPVGRYAVGQGPMWVV 327
                 ****************************************97 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0093        42      22     195 ..      13     187 ..       2     222 .. 0.56
   2 !   19.6   0.0   1.2e-07   0.00056     139     209 ..     234     303 ..     226     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0093
         SGL  22 qrihrldpatg.ketvldtpesvGaiap....rkdgrlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGr.lwfGtmgdeeakgeev 114
                 q+ih ++++++ + t l++ + +G + p     k++ l+v+++ ++++l ++  +  tl++  +      ++  +  d +Gr l++G+ +d  ++    
  EHU01420.1  13 QQIHVWQLNDEgTLTLLQVTDIAGQVQPmvvsPKKDFLYVGVRPDFRVLAFRIAQDGTLTEAGQAP-LPGSPTHISTDHAGRfLFCGSYNDACVSIS-- 108
                 556666554330333344444333332222212446677777777777754444444444443223.455667777777777555566666555554.. PP

         SGL 115 galyrldpd.gklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvf.adlkkgegepDGlavDaeG 195
                    +  d+  ++ ++v+d+l+     +++++++tlY+    +++i  +++ a+g+ l+      +++++g g p  +a  a+G
  EHU01420.1 109 --PIGADGVpQAPSQVIDGLAGCHSANIDNADSTLYVPALKQDRICLFNLGADGQ-LTPHSQQqVTTAEGAG-PRHMAFHANG 187
                 ..23334444455677777777777778888888888777777788777777776.4433333245544443.5555555555 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.2e-07
         SGL 139 lawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvwggg...kvvr 209
                 ++++pdg+ lY +D +  +i++++v+++g  l   + f   +++e +p G+ +D +G++ vA  +++   +v r
  EHU01420.1 234 IHLTPDGRFLYACDRTSSTITVFSVSEDGA-LLTVEGF---QPTETQPRGFNIDHTGQYLVAAGQKShhiEVYR 303
                 789**********************99999.5556655...55555599*************985553334444 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0   0.00095       4.3     229     263 ..       3      37 ..       1      53 [. 0.90
   2 ?   -2.6   0.0      0.49   2.2e+03      11      42 ..      42      72 ..      37      97 .. 0.70
   3 ?    4.4   0.0    0.0036        16     162     250 ..     175     262 ..     150     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00095
     DUF1513 229 rlvavtsPrgnlvavwdlasgelleeaaladaagv 263
                 ++v ++sP+ ++++vw+l+++ +l   +++d+ag 
  EHU01420.1   3 QVVYTASPESQQIHVWQLNDEGTLTLLQVTDIAGQ 37 
                 68899***************************994 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.49
     DUF1513 11 aahpsdpeavavaRrPgtfllvldlesgeelq 42
                +++p +++++ v+ rP   +l++++ ++ +l+
  EHU01420.1 42 VVSP-KKDFLYVGVRPDFRVLAFRIAQDGTLT 72
                5666.788888999999888888886555444 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0036
     DUF1513 162 rlSiRHlavaddgtvlvaeqyegeakeaapllalhrrgealealeapeeelaalagYigsvavdsegrlvavtsPrgnlvavwdlasge 250
                     RH+a +++g+ + +  +     e   l   h + e +++l++ + + +    + +++ ++ +gr++ +     ++++v++ +++ 
  EHU01420.1 175 GAGPRHMAFHANGQYAYSVNELNSTVEVWSLKNAHGKMESVQTLDMMPPDFTG-TRWAADIHLTPDGRFLYACDRTSSTITVFSVSEDG 262
                 4567**********999999988888888888888888888888887777444.56999999999998886666666778888654433 PP

>> DUF4394  Domain of unknown function (DUF4394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.083   3.7e+02     139     219 ..     137     217 ..     112     228 .. 0.63
   2 ?    9.3   0.0   0.00015      0.67     142     220 ..     242     317 ..     231     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.083
     DUF4394 139 ttTtlydiDaaldvLvlqsppNaGtLntvGslGvdleeeagf.DIaseeentayavlkvagstgssLysvdLttGaatavga 219
                 +  tly    ++d+++l +   +G+L+  ++  v++ e ag   +a  ++n  ya   ++ +++ ++ s+  + G++++v +
  EHU01420.1 137 ADSTLYVPALKQDRICLFNLGADGQLTPHSQQQVTTAEGAGPrHMAF-HANGQYAYSVNELNSTVEVWSLKNAHGKMESVQT 217
                 33678888888888888899999999999888887665555302222.2344444433344444446666666666666655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00015
     DUF4394 142 tlydiDaaldvLvlqsppNaGtLntvGslGvdleeeagfDIaseeentayavlkvagstgssLysvdLttGaatavgai 220
                  ly+ D ++ ++++ s   +G L tv  +  + ++  gf I  +     y+v+  ++s++ ++y++   +G+ + vg+ 
  EHU01420.1 242 FLYACDRTSSTITVFSVSEDGALLTVEGFQPTETQPRGFNIDHT---GQYLVAAGQKSHHIEVYRITQPQGQLEPVGRY 317
                 69***************************99999********96...566666666667767****9999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2572.13
//
Query:       EHU01421.1  [L=158]
Description: putative kinase inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-40  136.8   0.1    6.1e-40  136.6   0.1    1.0  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.1   3.4e-44   6.1e-40       4     132 .]      16     157 ..      13     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 3.4e-44
                 GGG.......CSBGGS-EEEEES--TTSSEEEEEEEETTSCCTCTTEEEEEEEEEETTSSEE-TTC...........EE-B-TTSSCCCCS---B--ST CS
         PBP   4 kky.......egentsPplswsdvpegtksyalvviDpDapkvsetflHwvvtnipasvtslpega...........vqgknslgeesesgYlgpcPpk 84 
                 +k+       +gen+sP+l+w+d+pegtks+++++ DpDap+ s+ ++Hwvv+n+pa++tslp+ga           vq ++++++   +gY+g++Pp+
  EHU01421.1  16 EKHvfngmgyQGENVSPHLAWEDAPEGTKSFVVTCFDPDAPTGSG-WWHWVVANLPADTTSLPQGAgsgkaalpagaVQTRTDFAQ---AGYGGAAPPA 110
                 5533455555999****************************8888.******************99999999999999*****999...********** PP

                 TS..EEEEEEEEEESSSG--BGSS-SHHHHHHHHCTTEEEEEEEEEEE CS
         PBP  85 gdgkHrYvfllyaldvealdlkagftraelgaaiaghvlakatlagnY 132
                 g+ +HrY+f ++aldve+ +++ag++ a +g++++ hvla+a+l++ Y
  EHU01421.1 111 GE-THRYIFSVHALDVESIEVDAGASGAMVGFNVHFHVLASASLTVHY 157
                 **.6**************99****999******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1267.09
//
Query:       EHU01422.1  [L=430]
Description: adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.9e-126  421.0   0.0   4.4e-126  420.8   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
       0.02   14.2   0.0      0.028   13.7   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
      0.032   14.2   0.0        8.4    6.5   0.0    2.4  2  JmjN             jmjN domain
      0.054   12.7   0.5       0.62    9.2   0.0    2.0  2  DUF4708          Domain of unknown function (DUF4708)
       0.15   11.1   0.0       0.24   10.4   0.0    1.2  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.8   0.0  1.2e-129  4.4e-126      10     406 .]      27     422 ..      18     422 .. 0.96

  Alignments for each domain:
  == domain 1  score: 420.8 bits;  conditional E-value: 1.2e-129
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                   + +  a+G  l+ +dg++++D +ss++++++G++hP++++a+++q+a++shv+fg +t+  a++l+++l++++p  l +vfla+sGs Ave+A+K+a
   EHU01422.1  27 CYPVVAAQGYTLQLADGRTLVDGMSSWWAAIHGYNHPRLNQALQQQMAQMSHVMFGGITHPAAVALCRQLVAMTPDALACVFLADSGSVAVEVAMKMA 124
                  378899******************************************************************************************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S.CETT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp.iqge 204
                   +y   +  + +++++++k ++HG+t++a+sv+++ + +++l+   lpe +++++p+   + + + +++   + + +l+++++ ++aAvi+Ep +qg+
   EHU01422.1 125 LQYWLGR-GETRQQFLTLKRGYHGDTFAAMSVCDPDNSMHSLWRGYLPEHHFAEAPQ---CGFDAAWNEEDFQDFARLIEQHQHQLAAVILEPiVQGA 218
                  **99998.677999******************************************7...78889999****************************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS.....B--TTTT-HH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs.....hgsTfgGnpl 296
                  gG+ ++ p +l+k+re+c+++++lli+DE++tGfGrTG+lfA+eha ++pD+++++KaltgG ++l+a+l+t++v+++++ +      hg+Tf+Gnpl
   EHU01422.1 219 GGMRFYHPRYLQKVREWCDRYGILLIADEIATGFGRTGTLFACEHAAITPDILCVGKALTGGtMSLAATLTTRDVADTISRSPagcfmHGPTFMGNPL 316
                  *******************************************************************************777699************* PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHH CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdee 394
                  acava+++l++++e ++  ++++++++l++gL++l +++  +++vR +G+++++e+  ++++   ++ + +  +Gv+i+++G ++i+l+pp+ii  e 
   EHU01422.1 317 ACAVAAESLKMVQEGHWRGQVSAIERQLQAGLTPLRQSP-AVADVRVLGAIGVVETHRPVNMA--ALQQFFVSQGVWIRPFG-RLIYLMPPYIIAPEA 410
                  ************************************998.*********************77..899999***********.*************** PP

                  HHHHHHHHHHHH CS
  Aminotran_3 395 idelleilkkal 406
                  +d l++++ +al
   EHU01422.1 411 LDTLIQAMAAAL 422
                  *******99886 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.9e-06     0.028     110     167 ..     191     246 ..      85     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.9e-06
                      -HHHHHHHS--S-TTS-EEEEEEEESSBTTTTT.B---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 110 dlekleaaikevgaheekiklisltvTnntagG.qvvsleelrevaaiakkygiplhlD 167
                      d+++++++i++   h+ + ++++l+  ++ agG + + + +l++v++++++ygi l+ D
       EHU01422.1 191 DFQDFARLIEQ---HQHQLAAVILEPIVQGAGGmRFYHPRYLQKVREWCDRYGILLIAD 246
                      78889999999...999****************6689*****************99988 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0048        17       7      22 ..     189     204 ..     188     209 .. 0.84
   2 ?    6.5   0.0    0.0023       8.4      15      30 ..     227     242 ..     225     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0048
                 HHHHC-HHHHHHHHHH CS
        JmjN   7 eeEFkdplkYiekiep 22 
                 ee+F+d+ + ie+  +
  EHU01422.1 189 EEDFQDFARLIEQHQH 204
                 8**********99776 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHCCCSEE CS
        JmjN  15 kYiekieplgekyGIc 30 
                 +Y++k+++++ +yGI 
  EHU01422.1 227 RYLQKVREWCDRYGIL 242
                 7**************6 PP

>> DUF4708  Domain of unknown function (DUF4708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.042   1.5e+02     223     239 ..      50      66 ..      45      89 .. 0.81
   2 ?    9.2   0.0   0.00017      0.62      34      68 ..      89     123 ..      83     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.042
     DUF4708 223 lqkhWknlyGYkLPede 239
                 +  +W  ++GY+ P  +
  EHU01422.1  50 MSSWWAAIHGYNHPRLN 66 
                 789*********99873 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00017
     DUF4708  34 qvklCrqllllepdvlasPvlgrlnqisvvmaikf 68 
                  v+lCrql++++pd+la+ +l +  ++ v +a+k+
  EHU01422.1  89 AVALCRQLVAMTPDALACVFLADSGSVAVEVAMKM 123
                 5789****************999988877666554 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.8e-05      0.24      52      90 ..     220     258 ..     214     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.8e-05
                      EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCC CS
  Glyco_hydro_2_C  52 avRtsHYPnqeevyelcDeyGlyvidEanlethglaqkl 90 
                       +R  H  + ++v e+cD+yG+ +i++  + ++g + +l
       EHU01422.1 220 GMRFYHPRYLQKVREWCDRYGILLIADEIATGFGRTGTL 258
                      567778888999*************99888888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3282.70
//
Query:       EHU01423.1  [L=343]
Description: biotin synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-20   73.7   0.0    2.2e-20   72.6   0.0    1.6  1  BATS         Biotin and Thiamin Synthesis associated domain
      3e-16   60.2   0.0    6.4e-16   59.2   0.0    1.5  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   2.5e-24   2.2e-20       1      85 [.     218     308 ..     218     309 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 2.5e-24
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT- CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGl 85 
                 +i++l+++k+tpl           +++ia++R+++P ++ +l++gRe++++++q +++++Gansi++g k       +ltt++ + ++d+ ++++lGl
  EHU01423.1 218 PINMLVKVKGTPLadnddvepfdfIRTIAVARIMMPASHvRLSAGREQMNEQTQaMCFMAGANSIFYGCK-------LLTTPNPEEDKDMLLFRKLGL 308
                 8********************************************************************9.......********************8 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   7.2e-20   6.4e-16       4     160 ..      48     200 ..      45     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 7.2e-20
                  ESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG..HHHHHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpd..eeklerll 98 
                  t +C+ +C++C+++   +   + +r + v+e+l+ ++++ +  g   + +g    +  ++   +le++++       + +et+ tl +  + +++rl 
   EHU01423.1  48 TGACPEDCKYCPQSARyKTGLESERLMEVDEVLRSAQKA-KAAGSSRFCMGAAWKNPSDRDMPYLEKMVEG---VKAMGMETCMTLGTlsDSQAQRLG 141
                  679***********999999999****************.6889888888877777766666666666664...8888888888888888******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeel 160
                  ++g+d ++++l++  ++ + +++  + +++e+l++l k reagik v+++ +++ Ge+  ++
   EHU01423.1 142 RAGLDFYNHNLDTSPEF-YGNII-TTRSYQERLDTLGKVREAGIK-VCSGGIVGLGETVNDR 200
                  *****************.*****.99*******************.7888888888998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2663.83
//
Query:       EHU01424.1  [L=383]
Description: 8-amino-7-oxononanoate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-57  193.2   0.0    8.2e-57  193.0   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
     0.0057   15.7   0.0     0.0089   15.0   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.018   14.3   0.0       0.03   13.6   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
      0.024   13.9   0.0      0.048   13.0   0.0    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   0.0   1.8e-60   8.2e-57       6     363 .]      44     378 ..      39     378 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.0 bits;  conditional E-value: 1.8e-60
                    SSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEE CS
  Aminotran_1_2   6 Lgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvp 99 
                    ++sn+ylg+s++p + + +++ +   ga+ag + + +g +  +++le +la +lg          +a++++sG+ a+++++  l+   + d+il++
     EHU01424.1  44 FSSNDYLGLSQHPAVIAGWQQGAAlaGAGAGASSHVTGFQAFHATLEAQLAGWLG--------YPRALLFISGFAANQAVIHLLAG--KNDRILAD 129
                    89**********9999999999999*99999999999999999************........777****************9998..******** PP

                    ESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBS CS
  Aminotran_1_2 100 dptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvf 195
                    ++++as  +++ +s ++++r++       h+d ++l   l+  +eg+    ++++e++++++G+ a+l++l +     ++ +++l+vD+a++++v 
     EHU01424.1 130 KLSHASLLDAASHSPAQLRRFA-------HNDPDSLAVRLSAPCEGQT---LVVTEGIFSMDGDSAPLQTLAAQ---SREAGAWLLVDDAHGIGVT 212
                    **********************.......*************999999...****************9999888...******************* PP

                    SSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 196 gsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrde 291
                    g+++  + + +   +p+ l+v +++KafG+ G   +++l+++a +++  ++sr++++s+++++a a al +al+  +  +  rqrl ++  ++r +
     EHU01424.1 213 GEQGRGS-CWQQGIKPE-LLVVTFGKAFGVSG---AALLCDDATADYFVQFSRHLIYSTAMPPAQASALLAALKQVQAGDGLRQRLSRNIAHFRRG 303
                    *886555.666666677.99************...************************************************************* PP

                    HHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHHHH CS
  Aminotran_1_2 292 LaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelveal 363
                      +l ++ ++s s++ +l ++++++a++ls  L+e  g++v++++++tv   ++rlRit+ A++ +++++ l+eal
     EHU01424.1 304 ASSLPWSLMPSSSAIQPLLVGDNAQAMALSARLAEA-GCWVSAIRPPTVppgTARLRITLtAAHQPDDIDVLLEAL 378
                    ************************************.*************9999********************97 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-06    0.0089      41     181 ..      82     210 ..      54     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
                  HHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--T CS
  Aminotran_5  41 atkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllne 138
                  +++   + ++++a +++ +    ++f+sG + a+++v++ l     + d+i+  ++ h + l    ++a    a+++ +  ++  +l +    +   e
   EHU01424.1  82 FQAFHATLEAQLAGWLGYPR--ALLFISGFA-ANQAVIHLL---AGKNDRILADKLSHASLL----DAASHSPAQLRRFAHNDPDSLAVRLS-AP-CE 167
                  56666778899*******95..9******99.*********...89**************99....88888899999999988888886544.33.46 PP

                  TEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTT CS
  Aminotran_5 139 ktklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavg 181
                     lv    + ++ G   p++ ++++ +++ga++lvD a ++g
   EHU01424.1 168 GQTLVVTEGIFSMDGDSAPLQTLAAQSREAGAWLLVDDAHGIG 210
                  66788899999**************************998876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.6e-06      0.03      35      89 ..      87     141 ..      65     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.6e-06
                      HHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTH CS
  Beta_elim_lyase  35 nrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetga 89 
                       +Le+++a  +g+  al + +G aAn+  + +l+ +++ +++++ +h     +  
       EHU01424.1  87 ATLEAQLAGWLGYPRALLFISGFAANQAVIHLLAGKNDRILADKLSHASLLDAAS 141
                      679999*****************************************87766655 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.048      24     153 ..      85     213 ..      73     292 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                      HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EE.EEE-B-TTTSSB-GGG.CGGG--TTEEEE CS
  DegT_DnrJ_EryC1  24 eveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakp.vfvDvdpdtynidpaa.ieaaitertkaI 115
                      + + +E+++a  lg   a+ + sG aA++ +++ l  g++d ++  +l+ ++   a++++ a+   f+  dpd++ +  +a  e      t +I
       EHU01424.1  85 FHATLEAQLAGWLGYPRALLFISGFAANQAVIHLLA-GKNDRILADKLSHASLLDAASHSPAQLrRFAHNDPDSLAVRLSApCEGQTLVVTEGI 177
                      56789**************************99875.669********************998537**********998763566666677888 PP

                      EEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EE CS
  DegT_DnrJ_EryC1 116 lpVhlyGqvadmdalkaiaakhglkvieDaAhAlGaty 153
                      +   + G++a ++ l a +++ g +++ D Ah++G t 
       EHU01424.1 178 FS--MDGDSAPLQTLAAQSREAGAWLLVDDAHGIGVTG 213
                      86..67*****************************664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3002.36
//
Query:       EHU01425.1  [L=251]
Description: putative biotin synthesis methltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-25   87.9   0.0    1.3e-24   86.7   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    9.2e-21   74.4   0.0    2.3e-20   73.1   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    2.2e-18   66.5   0.0    2.8e-18   66.2   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.1e-17   64.3   0.1    1.7e-17   63.7   0.1    1.3  1  Methyltransf_23  Methyltransferase domain
    2.3e-12   47.5   0.0    6.2e-12   46.1   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
    3.7e-09   36.3   0.0      5e-09   35.8   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00088   18.7   0.0     0.0013   18.2   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0014   18.5   0.0     0.0021   17.9   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase
     0.0024   17.4   0.0     0.0046   16.5   0.0    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.016   14.2   0.0       0.02   13.8   0.0    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
      0.017   14.4   0.0       0.17   11.1   0.0    1.9  2  CMAS             Mycolic acid cyclopropane synthetase
      0.024   14.6   0.0      0.045   13.7   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
      0.024   13.2   0.0      0.034   12.7   0.0    1.2  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
       0.13   11.8   0.0       0.19   11.3   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   9.8e-28   1.3e-24       1      96 []      48     139 ..      48     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 9.8e-28
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ld+GcGtG +++ + +rg++v+++Dls++ml +a+++a+  +    ++ +d+  lp++d+s+Dl +s+ v+++ +d+ +al+++ RvLkp+G +
       EHU01425.1  48 LDAGCGTGWYSRLWRDRGKQVMALDLSPQMLHQARQNAVAHH----YLAGDIDALPLADQSIDLLWSNLVVQWSDDLPAALRQFTRVLKPDGCM 137
                      8***************************************98....7*********************************************87 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      ++
       EHU01425.1 138 LF 139
                      65 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.8e-23   2.3e-20       1      97 []      47     135 ..      47     135 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.8e-23
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLd+GcGtG +++ + +r+  ++v+++D+s++ml +ar++a    +  +++ gd+++lp++d+s+Dl +s+  l + + +dl++al+++ rvLk
       EHU01425.1  47 VLDAGCGTGWYSRLWRDRG--KQVMALDLSPQMLHQARQNA----VAHHYLAGDIDALPLADQSIDLLWSN--LVVQWSDDLPAALRQFTRVLK 132
                      9*****************5..9*******************....8899*********************6..4444568************** PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      p+G
       EHU01425.1 133 PDG 135
                      **9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   2.2e-21   2.8e-18       3     129 ..      43     168 ..      41     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 2.2e-21
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                       g +vlD+GCGtG ++  + ++   +++v+ +D s++++ +Ar+na  + +      +gdi +l+  l+d+++Dl+ sn v++   d++++l++
       EHU01425.1  43 TGPQVLDAGCGTGWYSRLWRDR---GKQVMALDLSPQMLHQARQNAVAHHY-----LAGDIDALP--LADQSIDLLWSNLVVQWSDDLPAALRQ 126
                      5779****************77...689******************99999.....69*******..99************************* PP

  Methyltransf_31  97 iervlkpggilliedpr.........llaelpakveeeskay 129
                       +rvlkp+g +l ++ +         +++ l+a+v++++ + 
       EHU01425.1 127 FTRVLKPDGCMLFSTLSagslhevheAWSHLDAHVHANRFLS 168
                      *****************9988888887777778887777644 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   1.4e-20   1.7e-17      10     158 ..      32     179 ..      21     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.4e-20
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.kfdlIvlrevlehvpdppell 102
                       d+l+  +p  ++g  vLd GcGtG  +++ r++g++v + Dlsp++ + a++   a++  +  ++a + ++ ++dl  ++ v  + +d+p++l
       EHU01425.1  32 GDALLAWVP-AQTGPQVLDAGCGTGWYSRLWRDRGKQVMALDLSPQMLHQARQNAVAHHYLAGDIDALPLADqSIDLLWSNLVVQWSDDLPAAL 124
                      366666665.89**************************************98777777777767777775555********************* PP

  Methyltransf_23 103 rqiatllkpgGylllseplaslkedrllldwlylvpagrhi.sffsarslkelleea 158
                      rq+ + lkp+G +l+s+   s+ +++ +++ +   +a+ h  +f sa++++ ++ ++
       EHU01425.1 125 RQFTRVLKPDGCMLFSTL--SAGSLHEVHEAWSHLDAHVHAnRFLSAQAIAAACAAQ 179
                      ******************..5578888888887788888887999****99998765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   4.8e-15   6.2e-12       1      98 [.      48     136 ..      48     137 .. 0.89
   2 ?   -2.2   0.0       5.5   7.1e+03      29      54 ..     168     191 ..     167     227 .. 0.43

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 4.8e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+ GcGtG ++r ++++  ++++ ++D+sp+++++a++   +++       +++al l+d+    s Dl +++ v+++ +d+ ++l+++ ++Lk
       EHU01425.1  48 LDAGCGTGWYSRLWRDR--GKQVMALDLSPQMLHQARQNAVAHHY---LAGDIDALPLADQ----SIDLLWSNLVVQWSDDLPAALRQFTRVLK 132
                      89***************..**************888888777775...4566666666666....***************************** PP

  Methyltransf_12  95 pgGr 98 
                      p+G+
       EHU01425.1 133 PDGC 136
                      ***7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.5
  Methyltransf_12  29 spsaiedakeklakrennnnnnvele 54 
                      s++ai++a +  + r+  +++ v+l 
       EHU01425.1 168 SAQAIAAACAAQRLRC--HAQTVTLH 191
                      5566633332222222..22233222 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.9e-12     5e-09      42     170 ..      38     155 ..       3     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.9e-12
                      H--S--TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHH CS
  Ubie_methyltran  42 lvavkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklk 134
                       v  ++g +vlD  +Gtg    +l +   ++g +v+ lD++++mL+++++ +        ++l ++  +Lp  d+s D++     ++   D + 
       EHU01425.1  38 WVPAQTGPQVLDAGCGTGW-YSRLWR---DRGkQVMALDLSPQMLHQARQNAVA-----HHYLAGDIDALPLADQSIDLLWSNLVVQWSDDLPA 122
                      56678999*********95.445554...45536999*********99887654.....479******************************** PP

                      HHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHH CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvvlefskvelpllsqayelys 170
                      aL++  rvlkp G ++   fs      l++ +e++s
       EHU01425.1 123 ALRQFTRVLKPDGCML---FSTLSAGSLHEVHEAWS 155
                      *************665...55555555555555555 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.8e-07    0.0013     160     274 ..      42     155 ..      33     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.8e-07
        PrmA 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellkeekadvivaNILaevliel...aedikklvkegg 254
                 ++g +vlD G+G+G  +      g k+v+a+D+ ++ ++ a++Na   +  a  ++      l  ++++d++ +N + +   +l   + ++++++k++g
  EHU01425.1  42 QTGPQVLDAGCGTGWYSRLWRDRG-KQVMALDLSPQMLHQARQNAVAHHYLAgDIDA---LPLA-DQSIDLLWSNLVVQWSDDLpaaLRQFTRVLKPDG 135
                 67789***********97766655.78*****************9999988855633...3333.4789*******987766552226788999***** PP

        PrmA 255 llilSGilkekaeevaeale 274
                  +++S + +   +ev ea +
  EHU01425.1 136 CMLFSTLSAGSLHEVHEAWS 155
                 *****999888888888765 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.7e-06    0.0021      75     156 ..      46     139 ..      33     162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.7e-06
                     -EEEES-TT-HHH.HH--S-..EEEEESS..........-SSTTEEES-TTS-S--TT-EEEEEEES--.-SS-HHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_8  75 vvadlGcGeakia.eavrekekvrsfdlv..........avnervvacdlakvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllkv 156
                      v d GcG    +     + ++v+++dl           av ++  a d+  +Pl+d+s+d+    l +  +++l   l++  rvlk+ G +  
      EHU01425.1  46 QVLDAGCGTGWYSrLWRDRGKQVMALDLSpqmlhqarqnAVAHHYLAGDIDALPLADQSIDLLWSNLVVqWSDDLPAALRQFTRVLKPDGCMLF 139
                     478999999888733344567999999962222232222566778899**************9999987257899*************998765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-06    0.0046      22      80 ..      34      90 ..      29     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
                HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTG CS
         MTS 22 lLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankl 80
                 Ll  +p+++  +vlD GcG+G  +    ++ ++  v ++d + + l+ a++n+ a++ 
  EHU01425.1 34 ALLAWVPAQTGPQVLDAGCGTGWYSRLWRDRGKQ--VMALDLSPQMLHQARQNAVAHHY 90
                688889999999*************999998888..9***************9988764 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05      0.02     109     178 ..      37      99 ..      29     169 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
                     GGS.--TT-EEEEET-TTSHH..HHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS- CS
  Methyltransf_9 109 phlsdlkgrtildvGcgnGyh..lwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlp 178
                       ++  +g ++ld Gcg+G++  lwr  g++  +++ + P+ l+    +av +          l   i+ lp
      EHU01425.1  37 AWVPAQTGPQVLDAGCGTGWYsrLWRDRGKQ-VMALDLSPQMLHQARQNAVAHHY--------LAGDIDALP 99 
                     5666778899*********995567777765.46777788888887777775432........222333333 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.17      51     104 ..      32      84 ..      21     102 .. 0.83
   2 ?    1.2   0.0      0.15   1.9e+02     149     178 ..     124     153 ..     113     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHH CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkr 104
                  d +l  +  + G ++Ld GcG G   r   +r + +v++l lS +  ++a+++
  EHU01425.1  32 GDALLAWVPAQTGPQVLDAGCGTGWYSRLWRDR-GKQVMALDLSPQMLHQARQN 84 
                 566777778899************999988888.**********9999888876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
                 HHHHHHHS-TT-EEEEEEEEE--HHHHHCT CS
        CMAS 149 fkklkkllkedGllllhtitslhkkelaer 178
                  ++++++lk+dG +l  t+ + + +e++e+
  EHU01425.1 124 LRQFTRVLKPDGCMLFSTLSAGSLHEVHEA 153
                 5678899********999887666665544 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.5e-05     0.045      25      73 ..      43      87 ..      28     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
  Methyltransf_32 25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraek 73
                     +  +v+D+G+G g+ s+   +     + +v+++d++ ++ ++a++ a +
       EHU01425.1 43 TGPQVLDAGCGTGWYSRLWRD----RGKQVMALDLSPQMLHQARQNAVA 87
                     5679**************999....4999*************9998765 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.034     120     237 ..      46     157 ..      33     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
  Methyltransf_29 120 tvlDvGCgvasfgaylls..rdvltlslapkDeheaqvqfaLeRgvpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRp 211
                      +vlD GCg   ++    +  ++v++l l+p+  h+a+ q a+         +     lp   +s dl+  s   ++w+++  + l    Rvl+p
       EHU01425.1  46 QVLDAGCGTGWYSRLWRDrgKQVMALDLSPQMLHQAR-QNAVAHHYL----AGDIDALPLADQSIDLLW-SNLVVQWSDDLPAALRQFTRVLKP 133
                      79******987776665533589***********997.555544322....22346799********96.8899******************** PP

  Methyltransf_29 212 gGyfvlsappvyerkeeelkeeqkel 237
                      +G +++s+  +   + +e +e +++l
       EHU01425.1 134 DGCMLFSTLSAG--SLHEVHEAWSHL 157
                      ****99988766..333455556555 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015      0.19       8      85 ..      36     114 ..      29     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
        MetW   8 aelikp..gsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtl 85 
                 + ++++  g +vld GcG G   +l ++ ++ +   l+l+ + + ++ +  ++ +    d d    +d+s d+   +  +
  EHU01425.1  36 LAWVPAqtGPQVLDAGCGTGWYSRLWRD-RGKQVMALDLSPQMLHQARQNAVAHHYLAGDIDALPLADQSIDLLWSNLVV 114
                 56776511569************99988.666677789999999998888877665555555556677777766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1825.67
//
Query:       EHU01426.1  [L=223]
Description: dethiobiotin synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-37  128.7   0.0    2.7e-37  128.5   0.0    1.0  1  AAA_26    AAA domain
    2.2e-12   47.1   0.0    2.6e-12   46.9   0.0    1.1  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
    6.3e-06   25.6   0.0     0.0017   17.7   0.1    3.0  3  DUF1611   Domain of unknown function (DUF1611_C) P-loop domai


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   4.5e-41   2.7e-37       4     193 ..       5     208 ..       2     213 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 4.5e-41
      AAA_26   4 fvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgie......ededselikellgldqtyelpeplalsaplspelaarqegedidlekiv...k 93 
                 f+tgtdt+vGKTv s +L++a ++ g++ + +KP+++g +      +++d+  ++++ +++  ye  +pla+++p sp++ +++eg+ i+ +++    +
  EHU01426.1   5 FITGTDTEVGKTVASSALLQAASAAGYRCAGYKPVASGCTltaegiRNSDALALQRYSSVPLCYEQVNPLAFMEPTSPHIVSAEEGRPITFSTLSaglR 103
                 9***************************************999888888*****************************************88888899* PP

      AAA_26  94 elekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp.....envetlekksgipvlGv 187
                 ele  ad +++EGagg  +p++e+++ ad +++ ++pvilV+ ++lg in+++lt+ea r +++r++G i+N v+ p     + +++l++  + p lGv
  EHU01426.1 104 ELEPLADWILIEGAGGWYTPLSETQTYADWVETERLPVILVVGVKLGCINHAMLTAEAIRARGLRLAGWIANTVQLPgqryqAYLTALKERLPAPCLGV 202
                 *************************************************************************999976666699999*********** PP

      AAA_26 188 vPylpd 193
                 +P+l+d
  EHU01426.1 203 IPWLAD 208
                 ***987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   4.4e-16   2.6e-12       2     120 ..       5     211 ..       4     219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 4.4e-16
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep............................................. 54 
                 +i++t  +vGKT+ + +L++a + +g+r + ++ +   ++++a  eg +n  +                                              
  EHU01426.1   5 FITGTDTEVGKTVASSALLQAASAAGYRCAGYKpVASGCTLTA--EGIRNSDALalqryssvplcyeqvnplafmeptsphivsaeegrpitfstlsag 101
                 69*******************************9999999998..999999999********************************************* PP

                 ............................................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS CS
                 ............................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ............................................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygv 106
                                                             ++k  +++ +a+ +  a     l++ag+++n v+ +   ++ +  l+ lk+r++ 
  EHU01426.1 102 lrelepladwiliegaggwytplsetqtyadwveterlpvilvvGVKL-GCINHAMLTAEAIRargLRLAGWIANTVQLP--GQRYQAYLTALKERLPA 197
                 *******************************************98866.99999999887777999**************..***************** PP

                 -EEEEEE--CCHCC CS
                 xxxxxxxxxxxxxx RF
        CbiA 107 pvlgviprdeavae 120
                 p+lgvip+  + ++
  EHU01426.1 198 PCLGVIPWLADDSQ 211
                 ********887765 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.8e-07    0.0017      13      46 ..       2      35 ..       1      63 [. 0.82
   2 ?    1.5   0.0     0.026   1.5e+02      88     103 ..     109     124 ..      98     131 .. 0.79
   3 ?    2.7   0.0     0.011        66     145     191 ..     155     202 ..     136     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-07
     DUF1611 13 krvlvvGTdcavGKrttaleleealeerGlkaaf 46
                +r ++ GTd +vGK +++ +l +a+ ++G++ a 
  EHU01426.1  2 TRWFITGTDTEVGKTVASSALLQAASAAGYRCAG 35
                57799************************99765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.026
     DUF1611  88 pdlilveGQgsLthpa 103
                 +d+il+eG g+ + p 
  EHU01426.1 109 ADWILIEGAGGWYTPL 124
                 69********988776 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.011
     DUF1611 145 eieliealaakk.kvvgislNtknlseeeakealeeleeelglpvvdp 191
                  + + ea+ a+  +++g   Nt +l  +  +++l  l+e+l  p+  +
  EHU01426.1 155 AMLTAEAIRARGlRLAGWIANTVQLPGQRYQAYLTALKERLPAPCLGV 202
                 55555666666688999999******999***********99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1744.72
//
Query:       EHU01427.1  [L=274]
Description: putative amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-22   80.6   0.0    2.3e-22   80.0   0.0    1.3  1  ABC_tran     ABC transporter
    0.00025   21.4   0.1     0.0011   19.3   0.1    1.8  1  AAA_22       AAA domain
     0.0052   16.7   0.0     0.0076   16.2   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0078   16.6   0.2       0.02   15.3   0.2    1.7  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.017   15.2   0.1      0.036   14.2   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
      0.032   13.7   0.3          2    7.8   0.0    2.2  2  TniB         Bacterial TniB protein
      0.099   13.1   0.0       0.22   11.9   0.0    1.6  1  AAA          ATPase family associated with various cellular a
       0.14   12.6   0.0       0.24   11.8   0.0    1.3  1  AAA_23       AAA domain
       0.15   12.0   1.1       0.28   11.1   0.1    1.9  2  NACHT        NACHT domain
       0.17   11.4   0.0        1.1    8.8   0.0    2.1  2  AAA_25       AAA domain
        0.2   11.6   0.3       0.33   10.8   0.3    1.3  1  NTPase_1     NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.4e-25   2.3e-22       3     136 ..      53     202 ..      51     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.4e-25
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET..TCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilld..gkdlke....qeleslrkeigvlpqepqlfpeltvren...........esdee 84 
                 nv+l+l +g++++i+G+ G GK+tL+++++g+l  ++G+i ++  g + ++       +++r+ ig++pq  ++f +++v++n               e
  EHU01427.1  53 NVDLDLPPGTCTGILGRPGMGKTTLVNCIMGKLPINSGTISWQqdGSPPEDllsqPADQRARQGIGYVPQGRHIFTQMSVEDNlliallagaesR---E 148
                 99**************************************88833444444999888899****************************9996431...3 PP

                 .....HHHHHHHSTTGG.TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .....iekalsklglke.lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      +e + + l   + l++    ++   L   q+q +alaral+ +p+ll+lDEp 
  EHU01427.1 149 nhrpiPEMIFDLLPALYsLRQ----QRSGDLPVYQQQQLALARALVLQPRLLILDEPA 202
                 345666666666665551333....3459****************************6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   6.7e-07    0.0011       6     128 ..      62     231 ..      60     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.7e-07
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.....................erpevvfvtlpsst...sskdllrellralglelka.......... 70 
                 +++ + G +G+GKTtl++ ++ +l++ +                         +       ++p++    ++ ++  +ll al  ++++          
  EHU01427.1  62 TCTGILGRPGMGKTTLVNCIMGKLPINSGTISwqqdgsppedllsqpadqrarQ----GIGYVPQGRhifTQMSVEDNLLIALLAGAESrenhrpipem 156
                 567799******************987777669999999999999999964441....33333333334544444444444444444444555888888 PP

      AAA_22  71 ...........erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                            + ++s +l   + +q + ara    ++lli+DE    +    +ee+ + +r+l    ++g++++L 
  EHU01427.1 157 ifdllpalyslRQQRSGDLPvYQQQQLALARALvlqPRLLILDEPADgMApwlEEEMGNLIRRLNR--DYGLTILLL 231
                 8888888999988888888867777777777779**********6665965544666666677766..999999886 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.7e-06    0.0076     100     133 ..      62      95 ..       4      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.7e-06
                  SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevsek 133
                   ++ ++G  G+GK+tL+n ++++l ++ g +s +
   EHU01427.1  62 TCTGILGRPGMGKTTLVNCIMGKLPINSGTISWQ 95 
                  667899******************9999999965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.2e-05      0.02      25      88 ..      62     143 ..      56     238 .. 0.46

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd..............ggiflrgkcdql.esaipy.....salaqalareellrqllde 88 
                  ++ + G +G+GK++lv++++  l  +              +  +l++ +dq  +++i y      +++q+  ++ ll +ll+ 
  EHU01427.1  62 TCTGILGRPGMGKTTLVNCIMGKLPINsgtiswqqdgsppeD--LLSQPADQRaRQGIGYvpqgrHIFTQMSVEDNLLIALLAG 143
                 567799**************9888777333333222222221..1222222222222333333322344444444444444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.2e-05     0.036       3      23 ..      65      85 ..      63      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
                EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  3 aivGrpNvGKStLinaltgek 23
                +i+Grp  GK+tL+n ++g+ 
  EHU01427.1 65 GILGRPGMGKTTLVNCIMGKL 85
                89***************9984 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.02        33      37      53 ..      63      79 ..      59      91 .. 0.85
   2 ?    7.8   0.0    0.0012         2     104     159 ..     177     230 ..     153     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.02
        TniB 37 nlllvGdsnnGKtmive 53
                +  ++G++ +GKt++v+
  EHU01427.1 63 CTGILGRPGMGKTTLVN 79
                56799**********97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0012
        TniB 104 vskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivl 159
                 v +++q +l+    l++r+Li+DE  + +a      +e+ n++++L++++ ++i l
  EHU01427.1 177 VYQQQQLALARALVLQPRLLILDEPADGMA--PWLEEEMGNLIRRLNRDYGLTILL 230
                 4455555555556689********999995..55568999********99998875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.22       4      25 ..      67      88 ..      65     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                ESSTTSSHHHHHHHHHHHHTHE CS
         AAA  4 yGppGtGKTllakavakelgve 25
                 G pG+GKT+l++ ++ +l ++
  EHU01427.1 67 LGRPGMGKTTLVNCIMGKLPIN 88
                69*************9998554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.24      14      39 ..      53      81 ..      36      84 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
      AAA_23 14 eidF...skgltlItGpNGaGKTTildAi 39
                ++d+       t I G  G GKTT++++i
  EHU01427.1 53 NVDLdlpPGTCTGILGRPGMGKTTLVNCI 81
                44443333369*****************9 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00017      0.28       5      23 ..      66      84 ..      63      90 .. 0.89
   2 ?   -1.5   0.1       1.3   2.1e+03      84      88 ..     190     199 ..     135     239 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                EEC-TTTCHHHHHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqklala 23
                + G++G+GKTtL+  ++ +
  EHU01427.1 66 ILGRPGMGKTTLVNCIMGK 84
                78***********999866 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 E.....EEEE CS
       NACHT  84 L.....lilD 88 
                 +     lilD
  EHU01427.1 190 VlqprlLILD 199
                 1333336666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0007       1.1      24      50 ..      52      78 ..      46      85 .. 0.89
   2 ?   -0.3   0.0      0.43     7e+02     166     185 ..     211     230 ..     162     235 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0007
      AAA_25 24 wlvkgllpagelallaGapgtGKttla 50
                w v+  lp g+ + + G+pg GKttl+
  EHU01427.1 52 WNVDLDLPPGTCTGILGRPGMGKTTLV 78
                9999889******************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.43
      AAA_25 166 galvealeriarrtgaavll 185
                 +++ + ++r+ r +g ++ll
  EHU01427.1 211 EEMGNLIRRLNRDYGLTILL 230
                 34455566666677777776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3    0.0002      0.33       4      23 ..      66      85 ..      63      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
                EE--TTSSHHHHHHHHHHHH CS
    NTPase_1  4 iTGppGvGKtTlvkkvlell 23
                i G+pG+GKtTlv+ ++ +l
  EHU01427.1 66 ILGRPGMGKTTLVNCIMGKL 85
                679***********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2101.76
//
Query:       EHU01428.1  [L=673]
Description: excinulease of nucleotide excision repair, DNA damage recognition component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-31  107.6   0.1    6.6e-31  106.3   0.1    1.8  1  UvrB_inter  UvrB interaction domain
    5.5e-21   74.1   0.4    5.5e-21   74.1   0.4    2.1  2  UvrB        Ultra-violet resistance protein B
    1.1e-18   67.6   0.6    6.9e-18   65.0   0.1    2.5  3  Helicase_C  Helicase conserved C-terminal domain
    4.8e-10   39.7   0.0    3.8e-09   36.8   0.0    2.4  2  ResIII      Type III restriction enzyme, res subunit
    2.9e-09   36.4   0.5    8.1e-09   34.9   0.5    1.9  1  UVR         UvrB/uvrC motif
     0.0004   20.2   0.2      0.016   15.0   0.0    3.0  3  DEAD        DEAD/DEAH box helicase
     0.0065   16.2   0.0      0.034   13.9   0.0    2.1  2  AAA_30      AAA domain
  ------ inclusion threshold ------
      0.012   15.7   0.6       0.15   12.2   0.0    2.8  2  DUF87       Helicase HerA, central domain
      0.026   14.7   0.0       0.62   10.2   0.0    2.7  2  AAA_33      AAA domain
      0.044   13.8   0.0       0.12   12.4   0.0    1.8  1  UB2H        Bifunctional transglycosylase second domain
      0.046   14.1   0.0        6.9    7.0   0.0    2.7  2  AAA_19      AAA domain
        2.3    8.5   5.6       0.24   11.7   0.6    1.9  1  zf-C4H2     Zinc finger-containing protein


Domain annotation for each model (and alignments):
>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.1   4.4e-34   6.6e-31       1      91 []     159     249 ..     159     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 4.4e-34
  UvrB_inter   1 lelkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                 l+l++g+ id++++lr+L elqY+rnd+ ++rGtFrvrG++++ifpa++++ a+r+e+f++e+e+++ +dpltg++ + + ++ti+P++h+
  EHU01428.1 159 LHLTRGMIIDQRSILRRLSELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGQVESVVPRFTIYPKTHY 249
                 89****************************************************************************************9 PP

>> UvrB  Ultra-violet resistance protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.1   4.6e+03       8      23 ..     258     273 ..     254     279 .. 0.75
   2 !   74.1   0.4   3.7e-24   5.5e-21       1      42 [.     552     593 ..     552     594 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHHHH CS
        UvrB   8 dSMkkAideTerRRei 23 
                 ++M+    e  +RR+i
  EHU01428.1 258 QAMEDIKVELAERRKI 273
                 6788888899999998 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 3.7e-24
                 EE-SS--HHHHHHHHHHHHHHHHHHHHHHHHT------XXXX CS
        UvrB   1 lYADkiTdSMkkAideTerRReiQeaYNeehgItPktikKki 42 
                 lY+DkiT SM +Ai+eTerRRe+Q++YNee+gI+P+ ++Kki
  EHU01428.1 552 LYGDKITPSMARAIEETERRREKQQRYNEENGIVPQGLNKKI 593
                 8****************************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.8   7.2e+03      16      52 ..      43      79 ..      36      89 .. 0.75
   2 !   65.0   0.1   4.6e-21   6.9e-18       6     109 ..     435     544 ..     430     545 .. 0.90
   3 ?   -1.4   0.0       1.9   2.8e+03      40      66 ..     633     658 ..     612     665 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.8
                TSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTH CS
  Helicase_C 16 ggkilifvntidrlekvklllekkgikvavlhgelpq 52
                 gk+  ++n i +l++ +++l  ++  +a l+ge++ 
  EHU01428.1 43 SGKTFTVANVIADLNRPTMVLAPNKTLAAQLYGEMKE 79
                5788888888888877666666778888899999875 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 4.6e-21
                 HHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.....SSH CS
  Helicase_C   6 llell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.....rnv 97 
                 ll ++ ++ ++++++l+ v t++++e+ +++l e++g kv +lh+++ + er ei+++ + g++dvL+  + + +G+d+p+v+lV ++d++     r+ 
  EHU01428.1 435 LLSEIrQRVNVNERVLVTVLTKRMAEDlTEYL-EEHGEKVRYLHSDIDTVERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADkegflRSE 532
                 44444578899**************9977777.7789******************************************************88888889 PP

                 HHHHHHHTTSSS CS
  Helicase_C  98 tsyiqriGRtgR 109
                 +s+iq iGR++R
  EHU01428.1 533 RSLIQTIGRAAR 544
                 ***********9 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
                 TSTEEEESTTSTHHHHHHHHHHHHTTS CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkge 66 
                 + k+  l g+++q  ++  +eq  +g 
  EHU01428.1 633 QKKIHELEGQMQQHAQNLEFEQA-AGL 658
                 6789999******9999988887.555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   2.5e-12   3.8e-09       4     118 ..      13     119 ..      10     140 .. 0.72
   2 ?   -0.4   0.0      0.65   9.8e+02     134     144 ..     327     343 ..     237     397 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.5e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.. CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkkake 98 
                 +   Q eai++l++ l+ ++  +  +   TG+GKT++ a++i+ l +      +++l+p+k+l  q++ e+k+f++e++ e        ++ + + +  
  EHU01428.1  13 PSGDQPEAIRRLEAGLE-DGLAHQTLLGVTGSGKTFTVANVIADLNR-----PTMVLAPNKTLAAQLYGEMKEFFPENAVEffvsYYDYYQPEAYVP-- 103
                 55679***********9.999999999*******************9.....8***********************997444443222233333332.. PP

                 .....-SEEEEEHHHHHHTH CS
      ResIII  99 kdstnkkilvttiqsldads 118
                     +++ ++++  s+++++
  EHU01428.1 104 ----SSDTFIEKDASVNEHI 119
                 ....4445555555555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.65
                 S......EEEEETGGGT CS
      ResIII 134 d......viiiDEaHrl 144
                 d      ++++DE+H +
  EHU01428.1 327 DylpadgLLVVDESHVT 343
                 25555568889999865 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.5   5.4e-12   8.1e-09       2      35 ..     634     667 ..     633     668 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.4e-12
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 k+i eLe +m++ a+n++FE+AA lRDq+ +l+ 
  EHU01428.1 634 KKIHELEGQMQQHAQNLEFEQAAGLRDQLQELRT 667
                 89*****************************985 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.016      19      73 ..      37      83 ..      16     130 .. 0.78
   2 ?   -1.5   0.0       1.2   1.8e+03     158     169 ..     385     396 ..     329     404 .. 0.48
   3 ?    1.1   0.0      0.19   2.9e+02      46     103 ..     445     502 ..     425     524 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
                EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 19 vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky 73
                + + TGsGKT      v++ +       +  +++++P + La q + ++k+f+ +
  EHU01428.1 37 LLGVTGSGKTFTV-ANVIADL-------NRPTMVLAPNKTLAAQLYGEMKEFFPE 83
                5578******995.4555444.......34679*******************975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
                 TTSEEEEEESSB CS
                 xxxxxxxxxxxx RF
        DEAD 158 lqrqvivlSATl 169
                 l  q+i +SAT+
  EHU01428.1 385 LAPQTIYVSATP 396
                 224566666665 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.19
                 TS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHHHTT.CSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxx RF
        DEAD  46 tgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskldng.vdivvg 103
                  + ++l+ + t+ +ae+  + l++ +++  +r+l + i  v++ + +++l+ g  d++vg
  EHU01428.1 445 VNERVLVTVLTKRMAEDLTEYLEEHGEK--VRYLhSDIDTVERMEIIRDLRLGkFDVLVG 502
                 4568889999999999999999999997..555547799999999999998555999998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.3e-05     0.034       6      65 ..      17      76 ..      13     139 .. 0.80
   2 ?   -1.4   0.0       1.1   1.7e+03      47      76 ..     447     476 ..     433     501 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
      AAA_30  6 Qaaaveal...ltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaee 65
                Q +a+++l   l++g   ++l G+ G+GKt++++ +   +++ +++ ++lAp+++ A++L  e
  EHU01428.1 17 QPEAIRRLeagLEDGLAHQTLLGVTGSGKTFTVANV---IADLNRPTMVLAPNKTLAAQLYGE 76
                55555554322667778899***********98765...55566889***********99765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      AAA_30  47 grviglAptgkaAkvLaeelgieastiakl 76 
                 +rv++   t+++A++L+e l+ +++ +  l
  EHU01428.1 447 ERVLVTVLTKRMAEDLTEYLEEHGEKVRYL 476
                 577777788888888887666655555544 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.9e-05      0.15      25      48 ..      34      57 ..      32      69 .. 0.84
   2 ?    0.5   0.1      0.37   5.6e+02      97     152 ..     377     450 ..     367     607 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-05
       DUF87 25 HlAilgsTGsGKSntvavLleell 48
                H   lg TGsGK++tva  ++ l 
  EHU01428.1 34 HQTLLGVTGSGKTFTVANVIADLN 57
                7778*************9998887 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.37
       DUF87  97 ldpeelldllee....ddkpaaavqrsvleealdqaka.........keekeklssdepveklleelk.....k 152
                 +++ee++ l++     + +p   ++++  +e++dq+++         + +   +++d+++ ++++ ++      
  EHU01428.1 377 MKFEEFEALAPQtiyvSATPGKYELEKSGDEVIDQVVRptglldpilEVRPVATQVDDLLSEIRQRVNvnervL 450
                 66666666666666666666666666666666666666654444444444444444444444444444222210 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00041      0.62       5      77 ..      38     140 ..      36     145 .. 0.63
   2 ?    0.5   0.1       0.4     6e+02      32      77 ..     560     607 ..     557     651 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
      AAA_33   5 vGlpGsGKstlaerllkklg..avllssdt.lrrrlfgtdqq..skt..........................dytrvldrlyqilnelarkalsagrn 72 
                  G+ GsGK++ + ++++ l   + +l+ ++ l  +l+g+ ++  +++                          + + v++  +++++  a+kal ++r+
  EHU01428.1  38 LGVTGSGKTFTVANVIADLNrpTMVLAPNKtLAAQLYGEMKEffPENaveffvsyydyyqpeayvpssdtfieKDASVNE-HIEQMRLSATKALLERRD 135
                 69*************99999985555544425557777444322222555566666666666666666655533333433.444556778888888888 PP

      AAA_33  73 vilda 77 
                 vi+ a
  EHU01428.1 136 VIVVA 140
                 88766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.4
      AAA_33  32 tlrrrlfgtdqqsktdytrvldr..lyqilnelarkalsagrnvilda 77 
                 ++ r++++t++++++++   +++  + q ln+ +++ l+ g+nv+   
  EHU01428.1 560 SMARAIEETERRREKQQRYNEENgiVPQGLNKKITDILELGNNVVKTL 607
                 566777777776665444444446699999999999999999998655 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.3e-05      0.12       1      43 [.     161     203 ..     161     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
        UB2H   1 LypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriell 43 
                 L  G+ +++  + + L +l+Y +++++ + G+++v+g+ i+++
  EHU01428.1 161 LTRGMIIDQRSILRRLSELQYTRNDQAFQRGTFRVRGEVIDIF 203
                 678999********************************99985 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0046       6.9      14      40 ..      36      62 ..      29     154 .. 0.73
   2 ?    4.0   0.1     0.039        58      36      75 ..     441     486 ..     429     585 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0046
      AAA_19 14 lvtaGpGtGKTrvlkhivallvelggv 40
                 +++  G+GKT ++  ++a l++ + v
  EHU01428.1 36 TLLGVTGSGKTFTVANVIADLNRPTMV 62
                578999************999876543 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.039
      AAA_19  36 elggvkpeeillvaftgrAakelrerlaalgae.......atTiHrl 75 
                 ++ +v+ e++l+  +t+r a+ l+e l++ g++       ++T+ r+
  EHU01428.1 441 QRVNVN-ERVLVTVLTKRMAEDLTEYLEEHGEKvrylhsdIDTVERM 486
                 333343.88899999**********9988888844444445555444 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   0.00016      0.24       3      67 ..     423     486 ..     421     494 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
     zf-C4H2   3 keirektleleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsv 67 
                  e+r   +++++l +++++ v++ e+    +  +k+  e L++  ++H e++r +h+Di+++E++
  EHU01428.1 423 LEVRPVATQVDDLLSEIRQRVNVNERVLVTV-LTKRMAEDLTEYLEEHGEKVRYLHSDIDTVERM 486
                 57889999999999****9999866554333.4566779999999*****************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1130  (0.0630264); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.40
# Mc/sec: 5033.04
//
Query:       EHU01429.1  [L=301]
Description: putative NAD(P)-binding transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-75  254.5   0.1    1.4e-75  254.3   0.1    1.0  1  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.3   0.1   7.6e-80   1.4e-75       1     278 [.      11     286 ..      11     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 254.3 bits;  conditional E-value: 7.6e-80
                 EEEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SSSSSSTT-BHHHHHHHHHHHHHS- CS
     UPF0052   1 vvvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkgdgdlaghslgnllLaalaeltgs 99 
                 vv+lgGG+Gl +++++l+ + ++lt +vt++D+ggs+G++rr  g++a+gD+rn++ +li+++++ +++f+yRf+g+g+lagh+lgnl+L+al++l+ +
  EHU01429.1  11 VVALGGGHGLGRVMSALSPLGSRLTGIVTTTDNGGSTGRIRRAEGGIAWGDLRNCINQLITEPSVASAMFEYRFTGNGELAGHNLGNLILKALDHLSVR 109
                 8***********************************************************************************************99* PP

                 HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEESTTTGGGG-S...-EEEEEEESTT----HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCC CS
     UPF0052 100 leeaiealskilkvrgrvlPatddpvelsaeledGeeitgeskisearklkapikrvflepegaeaapevleaikeAdlivlgpGslytSiiPiLlvpg 198
                   e+++ ++++lkv++ ++P++++pv+l+a+ ++G+ + ge++i   ++++ap + ++l+p  + +++e+l+a++eAdli++gpGs+ytS++PiLl+++
  EHU01429.1 110 PLEVVNIIRNLLKVDAFLIPMSEHPVDLMATDDEGNAVYGETAI---DEMRAPPQALMLHPVVQ-PTREALDAVAEADLILIGPGSFYTSLMPILLMKE 204
                 ********************************************...55667********9998.********************************** PP

                 HHHHHHH-SSEEEEE--SB--TTTST.T-BHHHHHHHHHHCH-SS....S-SEEEE....E-S---HHHHHHHHT.TT--B-B--H CS
     UPF0052 199 iaealreskakkvlvsnimtqkGetd.gfsvsdhvkaieravgkgvakayvdavlv....ntsevpeellekyaa.egkepvelDa 278
                 +a+alr++ a++v++ n+  + + +   ++v+d ++ +e+a+gk+    ++dav+v    + s ++++l+ ++ + + + ++++D+
  EHU01429.1 205 MAQALRRTPANMVFIGNLGRELSPAAaALTVADKLRIMEEAIGKR----VIDAVVVgpatDVSLIDNRLIIQEPLeAADIKYRHDR 286
                 ********************99986669***************99....7777776332222233333333332225555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2287.18
//
Query:       EHU01430.1  [L=328]
Description: molybdopterin biosynthesis protein A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-39  133.2   0.0    9.7e-39  132.2   0.0    1.5  1  Mob_synth_C  Molybdenum Cofactor Synthesis C
    9.5e-28   97.7   0.0    1.3e-27   97.3   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    7.5e-08   32.7   0.0    1.8e-07   31.5   0.0    1.6  2  Fer4_12      4Fe-4S single cluster domain
    0.00012   22.2   0.0    0.00024   21.2   0.0    1.5  1  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   2.2e-42   9.7e-39       1     127 [.     185     311 ..     185     312 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 2.2e-42
                  -EEEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEEE-TTSEEESSSS-SS-EEH CS
  Mob_synth_C   1 ielrfIElmpvgegeewrekkvvsadeilerieerlalleakketkgpakrykikdgkgeiglIapvsepFCasCnRlRltadGklktCLfaeeeidl 98 
                  i+lrfIElm++geg   +++++vs + i++++ ++ ++++++ +++gpa++++++d+ geiglI+p+s++FCasCnRlR++a+G+l++CLf++ +i l
   EHU01430.1 185 IQLRFIELMETGEGGALFRQQHVSGEVIRDQLIAQGWQRRISGRSDGPAQVFYHPDYVGEIGLIMPYSKDFCASCNRLRVSAQGNLHLCLFGDGGIPL 282
                  69************************************************************************************************ PP

                  HHHHHTT--HHHHHHHHHHHHHT----HH CS
  Mob_synth_C  99 rdllregaseeeLkelikealarkkekhk 127
                  rdll ++++++eL+++i ++l +kk++h 
   EHU01430.1 283 RDLLASDDQQDELQARIASSLGQKKQTHF 311
                  **************************996 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   2.8e-31   1.3e-27       2     167 .]      18     180 ..      17     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 2.8e-31
                  EEESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerll 98 
                  +vt  Cn+rC++C          +   +ls++ei +  +++ a  g++ v l+ggep+l++df++++++  ++a + + i+v+tng+++  + ++  +
   EHU01430.1  18 SVTDVCNFRCTYCLPEGYqPNGIRNKSFLSLDEIRRVTRAF-AAAGTEKVRLTGGEPSLRRDFTDIIAAVNENA-AIRQIAVTTNGYRL-ARDIKQWR 112
                  68999********988877889999****************.8999***************************8.**************.******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellell 167
                  ++g++ ++++++++d ++++ ++ +++ f +v+++++++ eag+  v+++ v+++ +n ++l  +l+++
   EHU01430.1 113 DAGLTALNVSVDSLDARQFHAIT-GQDKFHQVMAGIDAAFEAGFSQVKVNSVLMRDVNSHHLATFLDWI 180
                  ***********************.99************************************9999986 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.1e-11   1.8e-07      14     116 ..      22     124 ..      11     132 .. 0.86
   2 ?   -3.4   0.0       2.4   1.1e+04      33      60 ..     288     315 ..     282     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.1e-11
     Fer4_12  14 gCnlsCkgCfnketwsfksgkef..tkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekp.ekdiwlytgytleelskkekeellk 109
                  Cn++C +C  +  +     ++   + + ++++ + ++    e++ l+GGEP+l   ++++++++  v e++   +  + ++gy l    k+ ++  l 
  EHU01430.1  22 VCNFRCTYCLPEGYQPNGIRNKSflSLDEIRRVTRAFAAAGTEKVRLTGGEPSL---RRDFTDIIAAVNENAAiRQIAVTTNGYRLARDIKQWRDAGLT 117
                 5*********8877766644444346899999999**9****************...999*********999889999********9999887888889 PP

     Fer4_12 110 eidvlvd 116
                  ++v vd
  EHU01430.1 118 ALNVSVD 124
                 9998887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
     Fer4_12  33 gkeftkelleeiiedlkkesiegltllG 60 
                 +++ ++el+++i  +l +++++ + l G
  EHU01430.1 288 SDDQQDELQARIASSLGQKKQTHFLLQG 315
                 5566778888888888888887777665 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.4e-08   0.00024       6      96 ..      21     109 ..      13     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.4e-08
     Fer4_14   6 sgCnlsCkgCdnketwks...elgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletng.tleiele 96 
                   Cn+ C+ C+ +  ++    + +   + +++ ++++ + +     +++ ltGGeP +    +++ +++  + e+    +i + tng  l+ +++
  EHU01430.1  21 DVCNFRCTYCLPEG-YQPngiRNKSFLSLDEIRRVTRAFAAAGT--EKVRLTGGEPSL---RRDFTDIIAAVNENAAIRQIAVTTNGyRLARDIK 109
                 46*********777.44413344555555666566655555555..779*******84...589************9999*99998614555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2416.13
//
Query:       EHU01431.1  [L=171]
Description: molybdopterin biosynthesis protein B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-31  107.9   0.0    3.8e-31  107.7   0.0    1.0  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   2.1e-35   3.8e-31       1     142 [.      14     155 ..      14     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 2.1e-35
                    EEEEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHH..HHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHH CS
  MoCF_biosynth   1 avitvGdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeal..laaleeadviittGGtGptpdDvtpealaklfekelegfeeafr 94 
                    a++tv+d++ +   +Dt+g++l e+ +e+g++v+++++vpD+  +i++ +  + a e+++v+i+ GGtG+ +++ tpeal +lf++e++gf+e+fr
     EHU01431.1  14 AMLTVSDSRDAS--SDTSGDYLREAAAEAGHSVIDHAIVPDNVYRIRAIVsrWIASEDVQVVIINGGTGFNAKNSTPEALLPLFDREIDGFGELFR 107
                    689*****9998..9***********************************6544445559************************************ PP

                    HHHHHHCCTTSHGGGGGGE.EE....TTE.EEEE-SSHHHHHHHHHHHHHGGH CS
  MoCF_biosynth  95 rvslkpgkpvgvapgailsrav....gkt.iigLPGspkavkealeeillpal 142
                    +vs++      ++  +  srav    ++t i+++PGs +a+++a+e i+ ++l
     EHU01431.1 108 MVSYED-----IGGSTLQSRAVaglaNQTlIFAVPGSTSACTTAWERIIADQL 155
                    *****8.....77777799999***9888899****************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1361.71
//
Query:       EHU01432.1  [L=161]
Description: molybdopterin biosynthesis, protein C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-55  185.5   0.9    5.2e-55  185.3   0.9    1.0  1  MoaC      MoaC family


Domain annotation for each model (and alignments):
>> MoaC  MoaC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   0.9   2.9e-59   5.2e-55       1     136 []      15     150 ..      15     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 2.9e-59
                 E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTB-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETTTTEEEEEEEEEEEESS--HH CS
        MoaC   1 mvdvsekeetkrtAvAegrvklseetlelikekklkkGdvlavariagimaaKktseliplcHplpltkveveleleeeeesveieatvktegktGvem 99 
                 +vdvs+k++t r+A+A   v +++etl++i e++++kGdv+a+ariagi+aaK+t+eliplcHpl+l+kve++l  e e ++v+i++ ++ +gktGvem
  EHU01432.1  15 IVDVSTKDDTVREAQADVLVLMKPETLQMIMEGRHHKGDVFATARIAGIQAAKRTWELIPLCHPLMLSKVEINLVAEPELNRVRITSLCRLTGKTGVEM 113
                 59************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHTTTHTT-EEEEEEEEEEESS CS
        MoaC 100 EALtavsvaaltvyDmvKavdkemvieevrlveKsgG 136
                 EALta+svaalt+yDm+Kav+k++vi+++rl++KsgG
  EHU01432.1 114 EALTAASVAALTIYDMCKAVQKDIVIDRLRLLHKSGG 150
                 ************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1450.50
//
Query:       EHU01433.1  [L=81]
Description: molybdopterin synthase, small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-19   69.5   0.0    3.2e-19   69.4   0.0    1.0  1  ThiS      ThiS family
  ------ inclusion threshold ------
      0.025   13.9   0.0      0.025   13.9   0.0    1.0  1  DDE_5     DDE superfamily endonuclease
       0.04   14.0   0.0      0.063   13.3   0.0    1.3  1  TGS       TGS domain
        5.3    7.2   7.3        9.4    6.4   0.2    3.0  3  DUF1586   Protein of unknown function (DUF1586)


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0     7e-23   3.2e-19       1      77 []       4      81 .]       4      81 .] 0.99

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 7e-23
                EEETTCCHHHHT.CEEEEESSTSBHHHHHHHHHHHTCHHG...TTTTEEEEETTEEEGCCTTTSB--TTCEEEEEESTTC- CS
        ThiS  1 vllfaelrelag.eeelelaegstvaelleaLgerypela...lerrvavavNgeivprlwldtelkdgDevailppVaGG 77
                vl+fa++rel+g ++ ++ a+   va+l+ aL+++++++a    ++r+ +avN+++ p    +++l+dgDeva++ppV+GG
  EHU01433.1  4 VLFFAQVRELVGtDSLTLAADYPDVAALRTALSQQGERWAlalDSERLLAAVNQTLRPM---THPLQDGDEVAFFPPVTGG 81
                89*****************************************99**************...******************9 PP

>> DDE_5  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.5e-06     0.025     182     231 ..      20      68 ..       1      77 [. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.5e-06
       DDE_5 182 vaDagYgdaaalrqglrelglhyvvrvrsdralyppgaeplppprsggrr 231
                    a Y d aalr++l+++g ++++++ s r l    ++ l p +++ + 
  EHU01433.1  20 TLAADYPDVAALRTALSQQGERWALALDSERLLAAVNQT-LRPMTHPLQD 68 
                 55688**************************99776554.4555555555 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.4e-05     0.063      36      57 ..      52      73 ..      45      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
                EEEECSEEEETTSBB-SSEEEE CS
         TGS 36 yAlVnGqrvgldhvLedgdvve 57
                 A Vn  + +++h+L+dgd v 
  EHU01433.1 52 LAAVNQTLRPMTHPLQDGDEVA 73
                699****************996 PP

>> DUF1586  Protein of unknown function (DUF1586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.28   1.3e+03       2       5 ..      32      35 ..      32      36 .. 0.91
   2 ?    3.4   0.4     0.018        80       2       6 ..      41      45 ..      40      46 .. 0.95
   3 ?    6.4   0.2    0.0021       9.4       5      11 ..      52      58 ..      51      58 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.28
     DUF1586  2 RTAL 5 
                RTAL
  EHU01433.1 32 RTAL 35
                9**9 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
     DUF1586  2 RTALA 6 
                R+ALA
  EHU01433.1 41 RWALA 45
                9***9 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0021
     DUF1586  5 LAAVsqt 11
                LAAV+qt
  EHU01433.1 52 LAAVNQT 58
                9*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 673.32
//
Query:       EHU01434.1  [L=150]
Description: molybdopterin synthase, large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-36  124.1   0.0    3.7e-36  123.9   0.0    1.1  1  MoaE          MoaE protein
  ------ inclusion threshold ------
      0.013   15.5   0.2        1.5    8.7   1.0    2.1  2  DUF1804       Protein of unknown function (DUF1804)
       0.24   10.9   0.0       0.32   10.5   0.0    1.1  1  Cu2_monoox_C  Copper type II ascorbate-dependent monooxygenas


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.0   6.1e-40   3.7e-36       5     113 .]      11     120 ..       7     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 6.1e-40
                 ---HHHHHHHH-.-TT--EEEEEEEE------TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEEEEEEESSHHHHHHH CS
        MoaE   5 pldvaeiealva.spkaGAvvlFvGtvRdsfdgkkvteLeyeayepmaektleeiaeearerwelervavvHrlGelevgeasvvvavssahRkeafea 102
                 p+ +a+ ++++a  ++ GAvv+F+G vR+++ g++v++L++e+y++m+ek+l+ei +ear+rw+l+rv v+Hr+Gel +g+++v+v+v+sahR +af+a
  EHU01434.1  11 PFAMAQEYQWLAgCNADGAVVTFTGKVRNHNLGDDVAALTLEHYPGMTEKALQEITDEARQRWPLQRVSVIHRIGELFPGDEIVFVGVTSAHRSSAFAA 109
                 6666664555555889************9999******************************************************************* PP

                 HHHHHHHHHHH CS
        MoaE 103 ceylidelKkr 113
                 +e+++d+lK+r
  EHU01434.1 110 AEFIMDYLKNR 120
                 *********86 PP

>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0062        37      65     108 ..      44      88 ..      35      91 .. 0.87
   2 ?    8.7   1.0   0.00026       1.5      36      62 ..     121     147 ..     100     150 .] 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0062
     DUF1804  65 eevakqlledfvvqvqetleelrent.elsaedkveiLasLsdsf 108
                 ++va   le++  + ++ l+e+ ++  +  + ++v+++ ++++ f
  EHU01434.1  44 DDVAALTLEHYPGMTEKALQEITDEArQRWPLQRVSVIHRIGELF 88 
                 67888899***************99978889******99988765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00026
     DUF1804  36 arrwkreakekGdDWDklRaakrlaeg 62 
                 a  wkre   +Gd W  +R++ ++a +
  EHU01434.1 121 APFWKRETTGQGDRWVDARSSDHVAAQ 147
                 667******************999875 PP

>> Cu2_monoox_C  Copper type II ascorbate-dependent monooxygenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.3e-05      0.32      44     109 ..      29      99 ..      16     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.3e-05
  Cu2_monoox_C  44 gihifasrlHtHllgkkvstyrvreg.....kelellgkddpysphyQeirplekevkvkkGDalaarCty 109
                   ++  f  ++  H+lg  v++  +++      k l+++  + ++    Q + ++++  ++ +GD+++   + 
    EHU01434.1  29 AVVTFTGKVRNHNLGDDVAALTLEHYpgmteKALQEITDEARQRWPLQRVSVIHRIGELFPGDEIVFVGVT 99 
                   4678899999*********9999987778889999**999999999******************9976555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1213.08
//
Query:       EHU01435.1  [L=261]
Description: putative outer membrane/secreted lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-70  236.6   0.0    1.4e-70  236.3   0.0    1.0  1  DUF1264   Protein of unknown function (DUF1264)


Domain annotation for each model (and alignments):
>> DUF1264  Protein of unknown function (DUF1264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.0   7.8e-75   1.4e-70       3     170 ..      52     216 ..      50     217 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 7.8e-75
     DUF1264   3 pvkkikahlnafhvyaddpkrqveahhycshlnedlrQcliydsdekdarLigvEYiiseklfetLpeeEkklWHsHeyEvksGllvlpakagvpeaae 101
                 p+++i+a+l++fh+y+ d++ q+eahhy++ ln+d++Q++iyd++++darL+gvEYiise+l++tLp+eEkklWHsH+yEvksG+lv+p   g+p +ae
  EHU01435.1  52 PIDAINAYLDGFHFYNGDKNGQMEAHHYVTVLNDDVMQAVIYDGNTRDARLMGVEYIISERLYRTLPAEEKKLWHSHQYEVKSGSLVAP---GLPAVAE 147
                 9****************************************************************************************...******* PP

     DUF1264 102 eaeleevvklYGKtyhlWqvdrgdklPlGapqLmmsftedgqvklklvkerderlgvdteekrekRkdi 170
                 +a ++++v++YGKt+h+W++dr+++lP+G p+Lmm+ft+dgq++++l+++rd+r+++d+++ r++R+di
  EHU01435.1 148 KALMTRIVNTYGKTWHTWHTDRDKQLPIGIPALMMGFTADGQMDARLLADRDRRFDIDSQKIRAERADI 216
                 ******************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2239.54
//
Query:       EHU01436.1  [L=363]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-142  473.8   0.0   2.9e-142  473.6   0.0    1.0  1  DUF1615   Protein of unknown function (DUF1615)


Domain annotation for each model (and alignments):
>> DUF1615  Protein of unknown function (DUF1615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.6   0.0  1.6e-146  2.9e-142       2     320 .]      49     363 .]      48     363 .] 0.99

  Alignments for each domain:
  == domain 1  score: 473.6 bits;  conditional E-value: 1.6e-146
     DUF1615   2 vkdregWaediaaalealkiaktkenvcavlAvieqeSsfqadpavpglgkiarkeieeraeklevpkllveaalkkkspdGktykerldavrtekeld 100
                 v+d++gWa+di+ +++++ ++++++n+cav+Av+ qeS+f a+ +vpg++kia++ei++ra+k++vp++lv++al  ks++G++y++rld+ ++ek+l+
  EHU01436.1  49 VSDKSGWADDIYISFRTQGLTASDSNLCAVIAVAGQESGFDANGTVPGMAKIAWEEIDRRAAKVHVPAFLVRTALLIKSSNGESYAARLDKAKSEKDLS 147
                 78************************************************************************************************* PP

     DUF1615 101 elyedliaevllgkklleelnpvttgGpmqvsvafAeeharkkypyeakgslReevftrrGglyfGiarLleYpaaYdkplyrfADfNaGvYaSRNAaf 199
                 ++++d+i++v++g+kl+++lnpv+tgGpmqvs+afAe+ha+  yp +++gs+R+evftr+Gg+yfG+++Ll+Ypa+Y+kplyrfAD+NaG+YaSRNAaf
  EHU01436.1 148 AIFDDFIEMVPMGQKLFGNLNPVHTGGPMQVSIAFAEAHAK-GYPWPVDGSIRREVFTRHGGVYFGTMHLLGYPADYSKPLYRFADYNAGWYASRNAAF 245
                 *****************************************.********************************************************* PP

     DUF1615 200 qaavsrlsgeklalDGDLllyekdesseasstekalralakrlklsekqirrdlkkeksadfeetelykkvfaladkkagkelpravlPqiklkspKis 298
                 qaav+r++g klalDGDL++y+   s++ +ste a+r+lakr ++s+++ir+dl+++++adf++++l+k+vf+ladk agk+lpr++lP+i+l+spKi+
  EHU01436.1 246 QAAVARATGMKLALDGDLIQYG---SDTLGSTELAVRTLAKRIDMSNREIRHDLERGEKADFSDSDLWKQVFTLADKMAGKPLPREMLPGIRLESPKIT 341
                 **********************...789*********************************************************************** PP

     DUF1615 299 rklttaWfAkrvdeRyqrClar 320
                 r+lttaWfA+rvd+Ryq+Cl+r
  EHU01436.1 342 RNLTTAWFAQRVDSRYQQCLSR 363
                 ********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2764.93
//
Query:       EHU01437.1  [L=235]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-59  200.0  33.7    4.1e-59  199.9  33.7    1.0  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9  33.7   2.3e-63   4.1e-59       1     207 []      19     231 ..      19     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 2.3e-63
      Bax1-I   1 raflrkvYgllalgllltalvaavvlsspa..qlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspillvytgaiil 97 
                 +a++++vYg++++glllta+v+++++++pa  + ++  + ++f+++i+++lalvf++ s  + ++ s a+a++l++l+++l+ l++++i+lvyt ++i+
  EHU01437.1  19 QAYMAQVYGWMTCGLLLTAFVSWFAARTPAvmE-LVFANRITFFGLIIVQLALVFFL-SG-MVHRLSGAVATGLFMLYSALTVLTMASIFLVYTYSSIA 114
                 579****************************54.45555789************733.33.5667899999**************************** PP

      Bax1-I  98 qaflltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlpssalelaisylgvllfsglilyDtqkiierageygee.......dailaa 189
                 ++f++ta++fg++++y++ttkrdls+lg++lf++lig+++aslvn++l+s+al +ai+y+gv++f+gl++yDtqk+++   + +          +i++a
  EHU01437.1 115 STFFVTAGMFGAMTFYGYTTKRDLSRLGSLLFMALIGILLASLVNFWLKSPALMWAITYIGVVVFVGLTAYDTQKLKNIGEQIDARdtenlrrYSIMGA 213
                 ****************************************************************************986655555599999*9****** PP

      Bax1-I 190 lsLyldfinlFlslLril 207
                 l+LyldfinlFl+lLril
  EHU01437.1 214 LTLYLDFINLFLMLLRIL 231
                 ****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 1538.74
//
Query:       EHU01438.1  [L=312]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-14   52.3  38.7    7.6e-14   51.9  38.7    1.1  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
  ------ inclusion threshold ------
        8.8    6.2  14.7        1.1    9.1   3.1    2.8  3  EptA_B_N         Phosphoethanolamine transferase EptA/EptB


Domain annotation for each model (and alignments):
>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9  38.7   8.5e-18   7.6e-14       4     301 .]      17     296 ..      14     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 8.5e-18
  LPG_synthase_TM   4 glalsalllall..lrgvdlaalaaalrsldpwwlllalllallsvllralrWrlllrsl.garislrrllrayliglfvnnvtPgalgGevvr 94 
                      gl ++a++++l+   r+v++ ++ +++ + +  ++l a +l+ +s+l+  + + l+ r+  g+++  r+++ +++i +++n ++   +gG ++r
       EHU01438.1  17 GLFFVAVIVLLViyARKVNWDDVYKVIVNNNRFVVLTAAALVVVSYLVY-GCYDLIGRAYcGHKLAKRQVMLVSFICYAFNLTLSTWVGGVAMR 109
                      555665555555667*************************999997753.34456666656********************************* PP

  LPG_synthase_TM  95 ayllkrkegvslskalasvvverlldllalvll.g.llallllggllaegaa..vllllalallllavlalllllllrrrlarlarvlkrlarl 184
                       +l +r  g++ ++ + ++ +    + l+ +ll g +++++l+  + +++ +  +l l+++all+l+v++l ++ +++rr+++++     l +l
       EHU01438.1 110 YRLYSR-LGLDSATITRIFSLSIATNWLGYILLaGvIFSAGLVPIPGGWFIGetTLRLIGAALLVLVVFYLWACAFSKRRRWKVKGQTLQLPSL 202
                      ******.999999966555553333333333320202333333333333333668888888888888888888888888888888666666665 PP

  LPG_synthase_TM 185 larfarklasakrklvlasprrlllafllslliwllealtlylllralgvdvslallllillaltlvgalpplPgGlGvrEaalalllallGvs 278
                                          r+ l +f+ s++ wl+ + +++lll   g d+ +  +l +ll+++++g++  +P+G+Gv Ea++++ll+   +s
       EHU01438.1 203 --------------------RMALFQFAVSCANWLVMGTIIWLLL---GRDAGYPMVLGVLLISSIAGVIIHIPAGIGVLEAVFVALLSGENLS 273
                      ....................4489******************985...89999999999*********************************** PP

  LPG_synthase_TM 279 aaealaaallyrlitlylllllG 301
                       ++++aa l+yr++ + + +++G
       EHU01438.1 274 HGTIIAALLAYRVLYFNFAVAPG 296
                      ****************9999998 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.1   0.00013       1.1      67     128 ..      14      75 ..       9     101 .. 0.87
   2 ?    3.5   2.1    0.0067        60      65     123 ..     133     190 ..     119     207 .. 0.73
   3 ?    2.3   1.6     0.015   1.4e+02      69     108 ..     166     207 ..     157     228 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00013
                 HHHHHHHHTHHHHHHHHH-EE----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH- CS
    EptA_B_N  67 lllyllllgvlPallllrvkikrksllkellkrlalllvallvivlvallfykdyaslfRnn 128
                 +l  l++++v+ +l++++ k++  +++k ++++  +++++++ +v+v +l+y  y  ++R +
  EHU01438.1  14 ILTGLFFVAVIVLLVIYARKVNWDDVYKVIVNNNRFVVLTAAALVVVSYLVYGCYDLIGRAY 75 
                 555678889999999999999*9******************************999999975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0067
                 HHHHHHHHHHTHHHHHHHHH-EE----HHHHHHHHH.HHHHHHHHHHHHHHHTTHHHHHH CS
    EptA_B_N  65 lklllyllllgvlPallllrvkikrksllkellkrl.alllvallvivlvallfykdyas 123
                 ++ l y+ll gv+ ++ l  v+i    +  e+  rl + +l+ l+v+ l+a +f+k   +
  EHU01438.1 133 TNWLGYILLAGVIFSAGL--VPIPGGWFIGETTLRLiGAALLVLVVFYLWACAFSKRRRW 190
                 455666777777766666..7777777777777777688888889999999999886555 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.015
                 HHHHHHTHHHHHHHHH-EE.----HHHH.HHHHHHHHHHHHH CS
    EptA_B_N  69 lyllllgvlPallllrvki.krksllke.llkrlalllvall 108
                 l   +l vl +++l+++   kr++++ +    +l +l +al+
  EHU01438.1 166 LIGAALLVLVVFYLWACAFsKRRRWKVKgQTLQLPSLRMALF 207
                 444567788888888888866666665544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2216.96
//
Query:       EHU01439.1  [L=414]
Description: cardiolipin synthase 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-42  142.1   0.0    2.2e-25   89.1   0.0    2.1  2  PLDc_2          PLD-like domain
    1.2e-08   34.8   1.6    1.5e-05   25.0   0.1    3.0  3  PLDc            Phospholipase D Active site motif
    4.9e-06   25.9   0.0    0.00082   18.6   0.0    2.6  3  Regulator_TrmB  Archaeal transcriptional regulator TrmB
    0.00028   20.4   0.3       0.21   11.0   0.1    2.7  2  PP_kinase_C     Polyphosphate kinase C-terminal domain 2
  ------ inclusion threshold ------
      0.072   12.5   0.0       0.12   11.8   0.0    1.3  1  YjcZ            YjcZ-like protein


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   3.1e-17   1.1e-13       4     125 ..      27     163 ..      24     169 .. 0.80
   2 !   89.1   0.0   6.2e-29   2.2e-25       2     132 ..     214     340 ..     213     341 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 3.1e-17
      PLDc_2   4 liksAkksidiatyyfvsdrei....ldallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe.t.......ll..gslHaKlyl 88 
                 +i++A++si + ++++ +++++     + ll+aa+rgvkv++++d      ++  e s+++ ++l ++agv+   ++ +       ++  ++lH+K+++
  EHU01439.1  27 AISRAEHSILLEIFIL-FEDDVgnalHKVLLAAAQRGVKVEMMVDG-----YGSSELSQSYVNSL-TQAGVRFIYYDpRplimgmrTNvfRRLHRKTVV 118
                 79**************.666654443777799*************9.....677789999****9.******8888852555554422789******** PP

      PLDc_2  89 idgktvivGSsNltkrgl.....dlnlElnvviedk...elakel 125
                 +dg +++vG+ N++++       ++ ++  v+++++   +++ +l
  EHU01439.1 119 VDGVIAFVGGINFSAEHYtdfgpEAKQDYTVEVKGPvvaDITRYL 163
                 **************9988788888888888888888554444444 PP

  == domain 2  score: 89.1 bits;  conditional E-value: 6.2e-29
      PLDc_2   2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsN 100
                 +++++ Ak+ + ia+ yf +   +l+++++aa+rgv+vr++++  ++d+++v+      l ++l  agvev+++ +  + lH K+++ d+++++vGSsN
  EHU01439.1 214 LDMLRTAKQDVIIANAYFFPGYRLLKEMRNAAQRGVRVRLIVQG-EPDMPIVKVGA-ELLYNYLVDAGVEVYEYCR--RPLHGKVAVKDQQWATVGSSN 308
                 57899**************************************9.78999988555.5555555*********987..679****************** PP

      PLDc_2 101 ltkrgldlnlElnvviedkelakeleeeFerl 132
                 l++ +l+lnlE+n++i+d+ +++ l+++ e+l
  EHU01439.1 309 LDPLSLSLNLEANLIIHDRNFNQTLRDNLEHL 340
                 ************************99998875 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   4.2e-09   1.5e-05       3      24 ..     110     131 ..     108     135 .. 0.91
   2 !    7.9   0.0     0.001       3.7       5      25 ..     290     310 ..     290     311 .. 0.94
   3 ?   -1.8   0.2       1.2   4.3e+03       3      12 ..     358     367 ..     357     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.2e-09
                 BEE---EEEETTTEEEEE---S CS
        PLDc   3 gthHqKivivDdrvafvGgaNL 24 
                  ++H+K+v+vD+ +afvGg N+
  EHU01439.1 110 RRLHRKTVVVDGVIAFVGGINF 131
                 689******************8 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
                 E---EEEETTTEEEEE---SS CS
        PLDc   5 hHqKivivDdrvafvGgaNLc 25 
                 +H K  + D  +a vG++NL+
  EHU01439.1 290 LHGKVAVKDQQWATVGSSNLD 310
                 69******************8 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
                 BEE---EEEE CS
        PLDc   3 gthHqKiviv 12 
                 + +++K+v+v
  EHU01439.1 358 WWQLTKGVVV 367
                 56789****8 PP

>> Regulator_TrmB  Archaeal transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0     0.006        21      36      60 ..      49      75 ..      17     102 .. 0.75
   2 ?   -2.3   0.0      0.58   2.1e+03      21      46 ..     142     167 ..     141     172 .. 0.72
   3 !   18.6   0.0   2.3e-07   0.00082       8      64 ..     206     263 ..     202     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.006
                    HHHHHHHHHHHHTT-EEEEEESS..-- CS
  Regulator_TrmB 36 eelreeliaaaergvtVllliyp..de 60
                    + l++ l aaa+rgv+V++++ +   +
      EHU01439.1 49 NALHKVLLAAAQRGVKVEMMVDGygSS 75
                    5688999************99885433 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.58
                     H-SSEEEEEE-GGGHHHHHHHHHHHH CS
  Regulator_TrmB  21 sAenelivslpselLeelreeliaaa 46 
                     +A+++ +v+++   + ++ ++l++a+
      EHU01439.1 142 EAKQDYTVEVKGPVVADITRYLQEAI 167
                     57777777777777777777777776 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 2.3e-07
                     HHHHHHHHHHHHHH-SSEEEEEE-GGGHH..HHHHHHHHHHHTT-EEEEEESS----GG CS
  Regulator_TrmB   8 retvierieelIesAenelivslpselLe..elreeliaaaergvtVllliypdedlee 64 
                     r+ + +   +++++A++++i++  + +++  +l +e+++aa+rgv+V l++ +++d ++
      EHU01439.1 206 RDDIEQHYLDMLRTAKQDVIIANAY-FFPgyRLLKEMRNAAQRGVRVRLIVQGEPDMPI 263
                     788999999************8666.55423799*****************99888766 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0015       5.5      45      64 ..      53      72 ..      28      80 .. 0.84
   2 !   11.0   0.1     6e-05      0.21      40     148 ..     234     346 ..     206     354 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0015
  PP_kinase_C 45 dkLyeAsqaGVkiklivrgi 64
                 + L +A+q GVk++++v g 
   EHU01439.1 53 KVLLAAAQRGVKVEMMVDGY 72
                 66899************986 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6e-05
  PP_kinase_C  40 dkeiidkLyeAsqaGVkiklivrg...icclrpgvkglsenikvisivdrfLEhaRiyifen..ggeeevyisSaDlmtRnldrRvevlvpvedeklk 132
                    ++++++ +A+q GV+++liv+g   +  ++ g + l  n  v + v+ +    R  + +   ++++ + ++S+ l + +l+   e+ + ++d++++
   EHU01439.1 234 GYRLLKEMRNAAQRGVRVRLIVQGepdMPIVKVGAE-LLYNYLVDAGVEVYEYCRRPLHGKVavKDQQWATVGSSNLDPLSLSLNLEANLIIHDRNFN 330
                  567899*****************9332334444443.4555566666666655555554433004444444677777777777777777777777777 PP

  PP_kinase_C 133 kelkeilelqlkDnvk 148
                  ++l++ le  l+ +++
   EHU01439.1 331 QTLRDNLEHLLAEDCQ 346
                  7777777777766655 PP

>> YjcZ  YjcZ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.3e-05      0.12     172     225 ..     143     196 ..     134     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
        YjcZ 172 gepqakaellqdvrdkaisrlaesinaspttRhyyHqWlasptrsgl.gdhkdiL 225
                 +++++  e++++v+++ +++l e i   +ttR +  q  + p++ +l gd +++L
  EHU01439.1 143 AKQDYTVEVKGPVVADITRYLQEAIGSQATTRRWWGQRSHRPAKNTLpGD-AQVL 196
                 567788899**************************************555.5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3134.82
//
Query:       EHU01440.1  [L=253]
Description: putative DNase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-13   51.1   0.6    1.9e-13   50.5   0.6    1.2  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.6   1.1e-17   1.9e-13      22     233 .]      33     244 ..      23     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.1e-17
                    HHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.................TTCEEEEECCH..ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  22 ladlltaydaDvlgLQEvdddelsriplllal.................ggflgasstsp..tgggggggnggavlsrfpltslfrrtfiefndlv 98 
                    l++ ++a+ aD+++LQEv + +   +++  ++                           +     +  g++g avlsrfp+ +        +n+ v
     EHU01440.1  33 LREAVRATSADIVFLQEVMGTHDIHPLQHENWpdtshyefladtmwndfA---------YgrNAVYPEGHHGNAVLSRFPIAEY-------DNRDV 112
                    778899999********777775555555533777777777777644442.........0334567799************988.......44444 PP

                    GCEEEEEEEEEEEEEEE.........CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHH........ CS
                    xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
  Exo_endo_phos  99 aalrreplaakleqlni.........ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapv........ 177
                        +e+ +   +ql+           +++       +++++  l      ++ +apv+vaGDfN                      +        
     EHU01440.1 113 SIAGSENRGMLHCQLTLpdgrgtlhvICVHLGLKEAHRRAQLAMLNDMVMALPADAPVVVAGDFNDWQ-------------------Grannilqk 189
                    44555555555555555889999999****************************************22...................123333444 PP

                    ......SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 178 ......glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                           + l  g p+ t ++r++  rlDri++++  +    + lp + ++        SDH
     EHU01440.1 190 gaglkeVFSLKSGRPARTFPARFPLLRLDRIYVRN-ATISQPWALPRKPWSHL------SDH 244
                    44555569**************************5.77777788888888766......998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2086.46
//
Query:       EHU01441.1  [L=130]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-60  202.6   7.2    2.2e-60  202.5   7.2    1.0  1  YbhQ            Putative inner membrane protein YbhQ
    0.00017   21.2   5.5     0.0002   21.0   5.5    1.1  1  YibE_F          YibE/F-like protein
  ------ inclusion threshold ------
      0.022   14.8   1.3      0.022   14.8   1.3    1.8  2  PSII_Ycf12      Photosystem II complex subunit Ycf12
      0.057   13.7   0.1      0.072   13.3   0.1    1.2  1  DUF3870         Domain of unknown function (DUF3870)
        0.1   12.8   0.2       0.14   12.4   0.2    1.2  1  CbbQ_C          CbbQ/NirQ/NorQ C-terminal
       0.15   11.8   6.6       0.22   11.3   6.6    1.3  1  TRAM_LAG1_CLN8  TLC domain
       0.21   12.0  11.1      0.046   14.2   7.0    1.8  2  MerC            MerC mercury resistance protein


Domain annotation for each model (and alignments):
>> YbhQ  Putative inner membrane protein YbhQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   7.2   8.6e-64   2.2e-60       1     126 [.       1     124 [.       1     129 [. 0.98

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 8.6e-64
        YbhQ   1 mkwqqrvrvvtGlscaqillhllvvallvlGwkskalvkvglglvvlyavvlvamlllqrhpearlrevgdfleeltttyyfGaalialyllsrvlhnn 99 
                 mk+++r++++tG+++a+i++hllv+a+lv+Gwk+kalv+v+++lvv ya+v++aml++qr  +arlr++ d+lee+tttyyfGaa+++l+l+sr++hnn
  EHU01441.1   1 MKLSNRFQIITGQTWAHIAMHLLVIAALVWGWKHKALVEVCSTLVVAYAAVFIAMLITQR--SARLRTLVDYLEEATTTYYFGAAMMTLFLVSRIFHNN 97 
                 9***********************************************************..9************************************ PP

        YbhQ 100 lllalvGlvllaGpalvsllakekkrr 126
                 llla++G+v+l+Gpalvsllake++ r
  EHU01441.1  98 LLLASLGVVMLLGPALVSLLAKEPAGR 124
                 ***********************9755 PP

>> YibE_F  YibE/F-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   5.5   7.6e-08    0.0002      55     141 ..      17     109 ..       5     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.6e-08
      YibE_F  55 lvilitvvtlllvngfnkktlaallgtllgvllalllallvikl.akltGlnseeaeel...lylplq...gldlsglllagiligalGAvmDv 141
                  +++ ++v+  lv g+++k+l+ +++tl++  +a+++a+l+++  a+l+ l  +++ee     y++      + +s+++   +l+++lG+vm +
  EHU01441.1  17 HIAMHLLVIAALVWGWKHKALVEVCSTLVVAYAAVFIAMLITQRsARLRTL-VDYLEEAtttYYFGAAmmtLFLVSRIFHNNLLLASLGVVMLL 109
                 56778899999*******************999999998887651556655.455555522233443355445589999999*********955 PP

>> PSII_Ycf12  Photosystem II complex subunit Ycf12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       4.4   1.1e+04       5       8 ..      24      27 ..      20      29 .. 0.47
   2 ?   14.8   1.3   8.4e-06     0.022       9      27 ..     100     118 ..      96     119 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.4
                HHHH CS
  PSII_Ycf12  5 viaQ 8 
                via 
  EHU01441.1 24 VIAA 27
                3333 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.4e-06
                 HHHHHHHHHHHHHHHHHHH CS
  PSII_Ycf12   9 LtalalIvlAGPaVIvlLa 27 
                 L++l+ ++l+GPa + lLa
  EHU01441.1 100 LASLGVVMLLGPALVSLLA 118
                 89****************8 PP

>> DUF3870  Domain of unknown function (DUF3870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.8e-05     0.072      19      84 ..      22      89 ..      11      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
     DUF3870 19 ktffislvvdkktgeivdadctltlelteeFvrsllvgks..lledieeieeeikerYfgssqkalia 84
                  ++ +lv   k  + v++  tl++  +  F++ l+  +s  l++  + +ee+ +++Yfg +  +l  
  EHU01441.1 22 LLVIAALVWGWKHKALVEVCSTLVVAYAAVFIAMLITQRSarLRTLVDYLEEATTTYYFGAAMMTLFL 89
                5566677788899999********************98753388999**************9988865 PP

>> CbbQ_C  CbbQ/NirQ/NorQ C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   5.6e-05      0.14      13      69 ..      16      72 ..       9      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
                HHHHHHHHHHHHHHHTTBTTTBSS---HHHHHHHHHHHTTT--HHHHHHHHTTCCC- CS
      CbbQ_C 13 eevakkLVklAneiRnlkeggLeegvSTRlLvyaAkLiasglpareacraalveplt 69
                +++a++L  +A+ +   k++ L e++ST ++ yaA  ia  + +r+a   +lv+ l 
  EHU01441.1 16 AHIAMHLLVIAALVWGWKHKALVEVCSTLVVAYAAVFIAMLITQRSARLRTLVDYLE 72
                57899999*************************************999999988775 PP

>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.6   8.5e-05      0.22      92     151 ..      38      96 ..       3     112 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.5e-05
  TRAM_LAG1_CLN8  92 v...rnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvll 151
                     v   + l+  +++v++ + +++    lr + +yl+++ ++   ++f g++++ +F+v R++  
      EHU01441.1  38 VevcSTLVVAYAAVFIAMLITQRSARLRTLVDYLEEA-TT--TYYF-GAAMMTLFLVSRIFHN 96 
                     04447788899***********************666.44..4666.*************955 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   7.0   1.8e-05     0.046      39     110 ..      13      87 ..       2      93 .. 0.82
   2 ?   -0.8   0.1      0.82   2.1e+03      70      79 ..     101     110 ..      94     124 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
        MerC  39 hqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflg....teaeetl....lfgslwqvltvlGaalLai 110
                 + ++ i + ++ ++alv+g+++     v   ++++ +++++a+++           l    +  + ++++ ++Gaa++ +
  EHU01441.1  13 QTWAHIAMHLLVIAALVWGWKHKALVEVCSTLVVAYAAVFIAMLITqrsaR-----LrtlvDYLEEATTTYYFGAAMMTL 87 
                 67889999999**********************************955430.....2444556677788999***99976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.82
        MerC  70 galGllillv 79 
                 + lG+++ll 
  EHU01441.1 101 ASLGVVMLLG 110
                 4444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 975.74
//
Query:       EHU01442.1  [L=449]
Description: RNA helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-51  172.6   0.0    1.3e-50  171.6   0.0    1.5  1  DEAD           DEAD/DEAH box helicase
    2.8e-26   92.1   0.1    1.3e-25   89.9   0.0    2.0  2  Helicase_C     Helicase conserved C-terminal domain
    1.5e-05   25.1   0.0    3.3e-05   24.0   0.0    1.5  1  ResIII         Type III restriction enzyme, res subunit
    0.00023   21.5   0.0       0.12   12.8   0.0    2.5  2  AAA_19         AAA domain
     0.0022   16.8   0.0        1.6    7.4   0.0    3.4  3  UTP25          Utp25, U3 small nucleolar RNA-associated SSU p
  ------ inclusion threshold ------
      0.082   13.2   3.7       0.18   12.1   1.1    2.8  3  AAA_22         AAA domain
       0.11   12.0   0.0       0.88    9.0   0.0    1.9  2  UvrD-helicase  UvrD/REP helicase N-terminal domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   4.9e-54   1.3e-50       1     176 []      25     197 ..      25     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 171.6 bits;  conditional E-value: 4.9e-54
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 t++Q++aip +l+g+d+l++a+TG+GKT+ f +p+lq+++ +    +g++  +ali++PtreLa q+ +n++ + ky+ lr l+++ggv+ + q+ kl+
  EHU01442.1  25 TPVQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANtgtvRGRRPVRALILTPTRELAAQVGENVSDYSKYLPLRSLVVFGGVSINPQMMKLR 123
                 89*************************************9889999999*************************************************9 PP

                 TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                  gvdi+v+tpgrl+dl +++ ++lsqv++lVlDEadr+ld+gf  +i+r+l++l       +++rq +++SAT+++++k+l
  EHU01442.1 124 GGVDILVATPGRLLDLAHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKL-------PAKRQNLLFSATFSDEIKTL 197
                 99****************************************************.......56788*********999875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.8     2e+03      17      55 ..     181     222 ..     166     234 .. 0.59
   2 !   89.9   0.0   4.9e-29   1.3e-25       4     110 ..     234     339 ..     230     340 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.8
                 SEEEEEESSHH.HHHH..HHHHHHHTTSTEEEESTTSTHHHH CS
  Helicase_C  17 gkilifvntid.rlek..vklllekkgikvavlhgelpqner 55 
                 ++ l+f+ t + +++    kll++ ++++va+ +   +q ++
  EHU01442.1 181 RQNLLFSATFSdEIKTlaEKLLHNPEQVEVARRNTASEQVSQ 222
                 333444444443665454677766668888888776666555 PP

  == domain 2  score: 89.9 bits;  conditional E-value: 4.9e-29
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                 e l +l+  e + +++l+f++t+  +++ ++ l  k gi++a++hg+ +q  r ++l++f++g ++vL+atd+a+rG+di+++ +V+n++lp  +++y+
  EHU01442.1 234 ELLSQLI-GEGNWQQVLVFTRTKHGANHlAEQL-GKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYV 330
                 5556665.889999**********885433444.5669************************************************************* PP

                 HHHTTSSST CS
  Helicase_C 102 qriGRtgRa 110
                 +riGRtgRa
  EHU01442.1 331 HRIGRTGRA 339
                 ********8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.3e-08   3.3e-05       6     170 ..      26     191 ..      22     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee......kflflvprkslleqtleefkkflseayke.....igkkvsgd 92 
                 + Q +ai  +l+       + +l  + TGtGKT    + l ++l+ + +        ++l+l p+++l  q  e+++++++    +      g +++ +
  EHU01442.1  26 PVQRQAIPVVLSG------RDLLASAQTGTGKTAGFtLPLLQKLSANTGTVrgrrpvRALILTPTRELAAQVGENVSDYSKYLPLRslvvfGGVSINPQ 118
                 5566666666533......4588999*******98867777777777666699********************98888887655555555444445555 PP

                 -B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII  93 kkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                   k     +   +ilv+t  +l         +++  + ++ +v++ DEa r+ ++   + +r++l k+++    l ++AT+ 
  EHU01442.1 119 MMKL----RGGVDILVATPGRLLDLA-----HQNAVDLSQVEVLVLDEADRMLDMgfiHDIRRVLAKLPAkRQNLLFSATFS 191
                 5555....99************9999.....999999*****************9777799999999977356699****86 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.5e-05      0.12       1     112 [.      28     159 ..      28     186 .. 0.62
   2 !    6.4   0.0     0.004        10      36      78 ..     241     300 ..     219     372 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
      AAA_19   1 qreave.alkekvllvtaGpGtGKTr.....vlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............atTiHrlal.... 77 
                 qr+a+   l+ + ll  a  GtGKT      +l++  a    ++g+ p + l++++t+  a ++ e+++ + +                     +    
  EHU01442.1  28 QRQAIPvVLSGRDLLASAQTGTGKTAgftlpLLQKLSANTGTVRGRRPVRALILTPTRELAAQVGENVSDYSKYlplrslvvfggvS-------Inpqm 119
                 8899977999999999*********75433356666677777778889******************997665544444333333220.......12222 PP

      AAA_19  78 ....ldfddlltealelle.eaeeekklqeeellivDEfq 112
                      ++d l+ ++  ll+  +++  +l + e+l+ DE+ 
  EHU01442.1 120 mklrGGVDILVATPGRLLDlAHQNAVDLSQVEVLVLDEAD 159
                 2222222223333333333555555666455588888874 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.004
      AAA_19  36 elggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal...................l 78 
                  +g  + +++l+ + t++ a+ l+e+l + g  a  iH+                      +
  EHU01442.1 241 GEG--NWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSqgartraladfksgairvlV 300
                 333..449*******************77777788888653345555555555555555540 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.32   8.2e+02      76      97 ..      76      97 ..      70     101 .. 0.79
   2 !    3.9   0.2    0.0071        18     163     221 ..     127     177 ..     113     187 .. 0.65
   3 !    7.4   0.0   0.00063       1.6     318     417 ..     234     330 ..     175     349 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.32
       UTP25 76 pkvLillptreaalevvelllk 97
                 + Lil ptre a +v e++ +
  EHU01442.1 76 VRALILTPTRELAAQVGENVSD 97
                578**********999777655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0071
       UTP25 163 diiiaSPlglrliieeedkkkrdtdfLsSiEvlivdqadvle.mQnwehvetvlkhlnki 221
                 di++a P  l  + +     ++ +d Ls +Evl++d+ad +  m  ++ +  vl +   +
  EHU01442.1 127 DILVATPGRLLDLAH-----QNAVD-LSQVEVLVLDEADRMLdMGFIHDIRRVLAK---L 177
                 666666655544333.....23344.9************76414444445544444...4 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00063
       UTP25 318 kilpqlkkssskssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpefy 416
                 ++l+ql   + + +++l++  +     ++ + l ++ ++ aai+  +s+   +ra   F++g  +vl+ t+ +   r  +i++  +v+ Y+lP+ pe y
  EHU01442.1 234 ELLSQLIG-EGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAA--RGLDIEELPHVVNYELPNVPEDY 329
                 45556555.66777888888888888888888888999999999999999999999999999999999999875..88999999999999999999877 PP

       UTP25 417 s 417
                  
  EHU01442.1 330 V 330
                 5 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1     7e-05      0.18      13     116 ..      46     174 ..      38     191 .. 0.61
   2 ?   -0.9   0.0       0.7   1.8e+03      39      85 ..     180     226 ..     168     242 .. 0.60
   3 ?   -1.6   0.0       1.2     3e+03      75     103 ..     326     357 ..     259     368 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
      AAA_22  13 esGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsstsskdllrellralglelka...........................erlsseelle 80 
                 ++GtGKT      l q+  +      + ++v     v +  +t  ++l+ ++ +++ +  k+                             ++  +ll+
  EHU01442.1  46 QTGTGKTAGFTLPLLQKLSA------NTGTVrgrrPVRALILTPTRELAAQVGENVSDYSKYlplrslvvfggvsinpqmmklrggvdiLVATPGRLLD 138
                 56666666665555555433......4444422222222222333444444444444333336666666666666666666666666666667788888 PP

      AAA_22  81 aleqalraravielliiDEaqh.lrseealeeLrsll 116
                 + +q++ + + +e+l++DEa++ l  +  + ++r+ l
  EHU01442.1 139 LAHQNAVDLSQVEVLVLDEADRmL-DMGFIHDIRRVL 174
                 888888888889**********66.788888885543 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.7
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelkaerlsseellealeqa 85 
                 +++ +++ ++ s + k+l+++ll++ ++   a+r++ +e +++  + 
  EHU01442.1 180 KRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQVHF 226
                 56666677777777888888888877777766555555544444444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.2
      AAA_22  75 seellealeqalrarav...ielliiDEaqhl 103
                  e++++++ +  ra+a+    +l+ +DE   l
  EHU01442.1 326 PEDYVHRIGRTGRAAATgaaLSLVCVDEHKLL 357
                 45555666666666666666678888886666 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00034      0.88       4      67 ..      29      97 ..      25     239 .. 0.72
   2 ?    0.6   0.0      0.13   3.3e+02      39      67 ..     241     267 ..     233     302 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00034
                   HHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGG.....EEEEESSHHHHHHHHHHHHH CS
  UvrD-helicase  4 eqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdr.....ilvvTFTnkAaeElkeRiee 67
                    q  +++ +g ++l +A  G+GKT+  +   l+++ ++  +++       l++T T+  a+   e +  
     EHU01442.1 29 RQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANTGTVRGrrpvrALILTPTRELAAQVGENVSD 97
                   34445566999**************99999999998886333323444488888888888777777666 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
                    HTSSSTGGGEEEEESSHHHHHHHHHHHHH CS
  UvrD-helicase  39 keeeiepdrilvvTFTnkAaeElkeRiee 67 
                     e+  + +++lv+T T+  a+ l e + +
     EHU01442.1 241 GEG--NWQQVLVFTRTKHGANHLAEQLGK 267
                    444..7899**************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3078.59
//
Query:       EHU01443.1  [L=329]
Description: tRNA-dihydrouridine synthase C [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-89  299.6   0.0    2.6e-89  299.4   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
     0.0054   16.2   0.0       0.01   15.3   0.0    1.4  1  His_biosynth  Histidine biosynthesis protein
     0.0097   15.3   0.1      0.016   14.6   0.1    1.3  1  NMO           Nitronate monooxygenase
  ------ inclusion threshold ------
      0.025   14.2   0.3      0.091   12.3   0.3    2.0  1  MR_MLE_C      Enolase C-terminal domain-like
       0.14   12.0   0.0        5.1    7.0   0.0    2.8  3  zf-CHC2       CHC2 zinc finger


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.4   0.0   7.2e-93   2.6e-89       2     281 ..       5     284 ..       4     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 299.4 bits;  conditional E-value: 7.2e-93
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT......SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEE CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee......tplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkv 94 
                 laPm+gv+d+ +R+l++ +++++L++te++++ +++ + k+++r ++e++++      t +++Ql+g++p++lae+A+++++lg++++dlN+GCPsk v
  EHU01443.1   5 LAPMEGVLDSLVRQLLTDVNDYDLCITEFLRVVDQLLPVKSFYRLCPELHHAsrtpsgTLVRLQLLGQHPEWLAENAARAVELGSWGVDLNCGCPSKLV 103
                 9*************************************************999999*9***************************************** PP

                 TTEEEGGGGGGSHHHHHHHHHHHHCCSS..S-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-C.G--CHHHHHHHHH-SS-EEEES CS
         Dus  95 trggaGaaLlrkpdlvaqivkavvkave..iPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyeg.tadweaIkevkqavsipviaNG 190
                 +++g+Ga+Ll++pdl+++  ka++ av+  +Pvtvk+r+g+d++ + ++e+a++v +aGa +l+vHgRt++++y++  ++w+aI e+++++sipviaNG
  EHU01443.1 104 NGSGGGATLLKDPDLIYRAAKAMRAAVPdsLPVTVKVRLGWDSSAR-SMEIADAVAQAGASELVVHGRTKEDGYRAeAINWQAIGEIRRRLSIPVIANG 201
                 ***************************999************6665.*****************************99********************* PP

                 S--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTT CS
         Dus 191 dIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkka 281
                 +I+d+++aq++l+ tG+d+vmigrgal+ P+l++    vk    + ap ++ e+ ++ +++++le++   d+g+++++++++w+ +  k+ 
  EHU01443.1 202 EIWDWQSAQDCLRITGCDAVMIGRGALNVPNLSR---VVKY---NDAPMAWPEVVVLLQQYTRLEKQG--DTGMYHVARIKQWLGYLRKAY 284
                 *********************************7...4444...4445567899*************9..9************98753333 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.9e-06      0.01      30     110 ..     149     232 ..     108     240 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-06
                   SHHHHHHHHHHHT-SEEEEEEHHHHC..TTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHH.CT-SEEEESHHHHH-TH CS
  His_biosynth  30 dpvelakryeeegadelhvvDldaak..egreanldlveeiaeevfipvqvGGGIrsledveelle.agadkviigtaavknpe 110
                    ++e+a + +++ga el+v   +     + + +n +++ ei+++++ipv   G I + +++++ l+  g+d v+ig  a++ p+
    EHU01443.1 149 RSMEIADAVAQAGASELVVHGRTKEDgyRAEAINWQAIGEIRRRLSIPVIANGEIWDWQSAQDCLRiTGCDAVMIGRGALNVPN 232
                   445566666666666666655544333355556666666666666666666666666666666666345666666666666655 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.4e-06     0.016     143     222 ..     148     224 ..     128     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.4e-06
         NMO 143 issvkearkvearGaDalivqGp.eaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLa.lGAsgvqig 222
                 + s++ a +v+++Ga  l+v G  ++ G++   ++      + + +++  ++iPviA G i+d +  +  L+  G  +v ig
  EHU01443.1 148 ARSMEIADAVAQAGASELVVHGRtKEDGYRA-EAI----NWQAIGEIRRRLSIPVIANGEIWDWQSAQDCLRiTGCDAVMIG 224
                 5677888999************725789998.455....6999********************9999999873599999888 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.5e-05     0.091      25     127 ..     109     223 ..      69     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
                 S.....HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHH.HHHHHHHHH......GG.GTESEEESSSST.TTHHHHHHHHHHHH.SSEEEESTTSS CS
    MR_MLE_C  25 d.....dvaedvervravreavgpgddvdlmvDanqawdla.tAirvarel......ee.ldllwlEEPvpp.eddleglaelrara.sipiaagEsly 108
                 +     d++   +  +a+r+av  +d++ + v +  +wd + + +++a ++      e  ++ +  E+  ++   +++++ e+r r+ sip++a+  ++
  EHU01443.1 109 GatllkDPDLIYRAAKAMRAAV--PDSLPVTVKVRLGWDSSaRSMEIADAVaqagasELvVHGRTKEDGYRAeAINWQAIGEIR-RRlSIPVIANGEIW 204
                 1556667777788899999999..667899999999996665677777777322221223344556777776322466666777.778*********** PP

                 SHHHHHHHHHHTSESEEEE CS
    MR_MLE_C 109 sradfrelleagavdivqp 127
                 +++ ++++l+  ++d+v++
  EHU01443.1 205 DWQSAQDCLRITGCDAVMI 223
                 ***************9976 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.14   5.1e+02      30      47 ..      44      63 ..      33      68 .. 0.83
   2 ?   -0.7   0.0      0.36   1.3e+03      14      30 ..     248     264 ..     245     270 .. 0.85
   3 ?    7.0   0.0    0.0014       5.1       6      37 ..     294     325 ..     291     326 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.14
     zf-CHC2 30 kdyvalCP..FHeektpsft 47
                k++  lCP   H+ +tps t
  EHU01443.1 44 KSFYRLCPelHHASRTPSGT 63
                678899*9877999***965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.36
     zf-CHC2  14 divdvveeyvkLkkkgk 30 
                 ++v ++++y +L+k+g+
  EHU01443.1 248 EVVVLLQQYTRLEKQGD 264
                 5788999********97 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0014
     zf-CHC2   6 idelkeridivdvveeyvkLkkkgkdyvalCP 37 
                 i +lk+++di+  +++y +L+++  ++++  P
  EHU01443.1 294 IRALKTSADIATAIDRYAALQRQTCQFSSASP 325
                 889*********************99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2444.40
//
Query:       EHU01444.1  [L=305]
Description: UDP-galactose-lipid carrier transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.9e-110  366.2   0.8     8e-110  365.8   0.8    1.1  1  PPK2      Polyphosphate kinase 2 (PPK2)


Domain annotation for each model (and alignments):
>> PPK2  Polyphosphate kinase 2 (PPK2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.8   0.8  4.5e-114    8e-110       4     227 ..      52     275 ..      49     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 365.8 bits;  conditional E-value: 4.5e-114
                 HHHHHHHHHHHHHHHHHHHHSGGGGG-EEEEEEEESTTS-HHHHHHHHHTTS-GGG-EEEE--S--HHHHTS-TTHHHHTT---TT-EEEEES-GGGGG CS
        PPK2   4 kdeyeeelaklqielvklqekvkaegkklvvifegrDaAGKgGaikrvtealnprvarvvalkaPteeEksqwylqRyvehlPakgeivlFdRswYnra 102
                 +++y +el +lq elvklq++v+++g++lv++fegrDaAGKgG+ikr+t++lnpr++rv+al+aP+++Ek+qwy+qRy++hlPa+ge+vlFdRswYnra
  EHU01444.1  52 RRRYFRELLQLQGELVKLQDWVMRTGHRLVILFEGRDAAGKGGVIKRITQRLNPRTCRVAALPAPNDREKNQWYFQRYIAHLPAAGEMVLFDRSWYNRA 150
                 5789*********************************************************************************************** PP

                 THHHHHTSS-HHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSS-CCC---CCCCCHHHCHHHHHHHHHHHHHHH--SSS-EEEE CS
        PPK2 103 gvervmgfctdkeaerflreipefErmlvesgillvKfwlsiskeeqleRfkeRredPlkqwKlsplDlksrekWddytkakeemlartdteeaPWivv 201
                 gvervmgfc+d+++ +f+r++pefE+ml++sgi+++K+ +si++eeq+ Rf +R++dPlkqwKlsp+Dl+sr++W+dyt+akeeml rt+++eaPW+vv
  EHU01444.1 151 GVERVMGFCSDADVAEFYRSVPEFEKMLTRSGIQIIKYCFSITDEEQELRFMSRIHDPLKQWKLSPMDLESRRRWEDYTEAKEEMLSRTHIQEAPWWVV 249
                 *************************************************************************************************** PP

                 E-SSHHHHHHHHHHHHHHHHHHHHHH CS
        PPK2 202 eaddKkrarlnvirtllkalkyeeke 227
                 ++ dKkrarln+i++ll++++ye   
  EHU01444.1 250 QGVDKKRARLNCISHLLQQVPYEAAP 275
                 *********************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2426.93
//
Query:       EHU01445.1  [L=534]
Description: low-affinity inorganic phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-88  295.0   6.9    1.4e-87  293.9   6.9    1.5  1  PHO4      Phosphate transporter family
  ------ inclusion threshold ------
       0.11   13.1   0.7        0.9   10.2   0.7    2.6  1  DUF2627   Protein of unknown function (DUF2627)


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   6.9   1.6e-91   1.4e-87       1     337 []      79     524 ..      79     524 .. 0.92

  Alignments for each domain:
  == domain 1  score: 293.9 bits;  conditional E-value: 1.6e-91
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf...dpselm..lgmlaallgaavwlllatvlglPvStthslv 94 
                 +G++D+ana+at++++++lt+  Av+++++++flG++l+ + Va  i + +  vel+   ++   +  +++ a l++a++w+l ++++glP+S++h+l+
  EHU01445.1  79 NGFHDTANAVATVIYTHSLTPGAAVVWSGLCNFLGVMLSSGVVAFGIISLL-PVELIlqaSSG--NgfAMIYALLFSAIIWNLGTWYFGLPSSSSHTLI 174
                 8***********************************998888999999966.57755543333..3448999999************************ PP

        PHO4  95 GaliGaalaa.....egg.eavkwkklvkivlswvlsPllggiiaallfllvkrlilvkeklknalralpvlvlvtiailalsilfkgeskkddeetek 187
                 G++iG+++a+     ++g ++v+w++ +k+ ++++lsP++g+++aall++++k li      +++l+ +p                     + +e  + 
  EHU01445.1 175 GSIIGVGVANamlhgRSGlSGVDWDQALKVGYALLLSPVVGFVCAALLLWAMKLLIR-----NRQLYEAP---------------------HSNEPPPV 247
                 *************985555************************************65.....45566666.....................34555566 PP

        PHO4 188 lfkflqvvsaalvsfahGanDvanaiGpllaali................................................................. 221
                 +++ l++++++ vsfahG+nD+++ +G+++++l+                                                                 
  EHU01445.1 248 WIRGLLILTCTGVSFAHGSNDGQKGMGLIMLILVgtmpiayalnrslppeqiprvaalsdvtarqllhiqpaatpapdsrnvltafvstdtvnpnvlpa 346
                 67***************************99888***************************************************************** PP

        PHO4 222 ...........................................................siyk...a.sk.evplwvlllgglaialGlllgGkrvikt 256
                                                                              +k     ++  +p+wv +++++a++lG+++g++r++ t
  EHU01445.1 347 lgmtlrdisdqirrygsmdnipaqsvtntrnqmylaaesikhlqtahvslpdetarnlkA-VKtelDsATrFIPMWVKVVVAIALGLGTMVGWRRIVVT 444
                 ****************************************************99998852.333331344467************************** PP

        PHO4 257 vGekit.kkltpsrGfaaelaaaltvllasklglPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsalls 337
                 vGe+i  ++lt+++G +ael+a++t+ +a ++glPvStThvl+++v+G+++a++  s+++++++rn+++aW+lTlpvs+lls
  EHU01445.1 445 VGERIGkTHLTYAQGASAELVAMATIGAADAFGLPVSTTHVLSSGVAGTMAANR--SGLQMSTLRNLAVAWILTLPVSILLS 524
                 *****9768********************************************4..7***********************97 PP

>> DUF2627  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7    0.0001       0.9       5      59 ..      29      81 ..      27      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
     DUF2627  5 alliLvipgllaayGiklmrdalfgilsspfsslwlqflaGl.llfaiglgfiaGf 59
                a+ +L+i g la  G+ l  d   +++++p++s +  fl+Gl ll+a+g+ f+ Gf
  EHU01445.1 29 AFYVLLIAG-LAFAGFNLFHDV--EKTNTPVTSYVPFFLLGLaLLIALGFEFVNGF 81
                677888876.6899*******5..999**************9346789*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 4479.87
//
Query:       EHU01446.1  [L=560]
Description: putative transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-33  116.7   0.4    3.1e-19   69.6   0.0    2.2  2  DDE_Tnp_ISL3   Transposase
    1.7e-06   28.6   7.4    1.7e-06   28.6   7.4    2.2  1  zf-ISL3        zinc-finger of transposase IS204/IS1001/IS1096
    1.5e-05   24.9   0.8    4.7e-05   23.3   0.1    2.3  2  HTH_29         Winged helix-turn helix
    0.00019   21.5   0.0    0.00088   19.4   0.0    2.2  1  HTH_17         Helix-turn-helix domain
    0.00039   20.4   0.6     0.0062   16.6   0.2    2.8  2  HTH_7          Helix-turn-helix domain of resolvase
     0.0036   17.0   3.7       0.02   14.7   0.5    3.6  3  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.025   14.3   0.0    1.6  1  Sigma70_r4_2   Sigma-70, region 4
      0.027   14.2   0.2      0.098   12.4   0.2    2.0  1  HTH_38         Helix-turn-helix domain
      0.028   14.2   0.0      0.073   12.9   0.0    1.6  1  Phage_AlpA     Prophage CP4-57 regulatory protein (AlpA)
      0.035   13.9   0.1        0.1   12.4   0.1    1.8  1  MerR           MerR family regulatory protein
      0.042   14.0   0.1      0.042   14.0   0.1    3.7  4  HTH_28         Helix-turn-helix domain
      0.062   13.1   0.0       0.36   10.7   0.0    2.2  2  HTH_IclR       IclR helix-turn-helix domain
       0.16   11.8   1.8        3.8    7.4   0.1    2.9  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   2.3e-22   3.1e-19       1     177 [.     156     353 ..     156     372 .. 0.71
   2 !   45.2   0.2   6.4e-15   8.8e-12      91     235 ..     382     525 ..     379     529 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.3e-22
  DDE_Tnp_ISL3   1 lgiDEislkkghkyvtvvvdllvdggrlldilpgRkketlkafleslsekerekveavvmDmsaayksavkealPnAkivvDrFHvvklanealdev 97 
                   +giDE ++++gh+y t +v+l  d++r l  lpgR+++tl a++++       ++++v+ D    y+ a+++ +P+A+ v+Dr+H+ k +++al+++
    EHU01446.1 156 VGIDEWAWHRGHRYGTLIVNL--DTHRPLVLLPGREQRTLAAWFKKY-----PEIQVVSRDRGGIYALAARDGAPQATQVADRWHLLKNIGDALERM 245
                   69*******************..**********************66.....57******************************************* PP

  DDE_Tnp_ISL3  98 Rrreqkel....re.......ekrkklkrsrrlllknpenlteeqkqr.................ldelleaspelekaYelkeelrevfrkkdkee 166
                     r++  +    +e       +++++ + s+ ll  + ++   +++ +                 +++++ +s+ + + +   +++ e+ +k  +  
    EHU01446.1 246 MYRHMPLIrlvaTElspkkqnTEASPATASKLLLPERIKRQRRDKRYQrwaevdslhkkgcgireISRITGLSRVTVRRWIQSKAFPEISTKPPRPG 342
                   9999988855551144444444444445555555444444433333333445555555555545555556666666666666666666666444444 PP

  DDE_Tnp_ISL3 167 arkalkewiek 177
                       ++ew+e+
    EHU01446.1 343 LLDPWQEWLEE 353
                   44455555554 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 6.4e-15
  DDE_Tnp_ISL3  91 nealdevRrreqkel..reekrkklkrsrrlllknpenlteeqkqrldell.easpelekaYelkeelrevfrkkdkeearkalkewiekaersglk 184
                    +a+++ R+++   +  +++  +  + sr+l+  +  + +e+ ++r+ el+ + +p+l+ a +l  ++ ++++     + +++l++w +++ +sgl 
    EHU01446.1 382 RDAVTKWRKQVNGPViaPGRLPSASRVSRWLMPWRMVRGEENYASRFIELMcQKEPQLKMAQQLSLDFYRMLK----TKNKSQLNQWFADVSKSGLV 474
                   677888888888777665566677778899999999999999999987754499**************99999....678999************** PP

  DDE_Tnp_ISL3 185 efkklaktlknhreeIlnyfdsrlsngpvEgiNnkikaikrrayGfrnfen 235
                    ++++a+ +++ ++ I +++ sr+sng+vEg  n++k +kr+ yG   fe+
    EHU01446.1 475 DLQRVAAGMEADATAIYEAISSRWSNGVVEGHVNRLKMLKRQMYGRAGFER 525
                   *********************************************888876 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   7.4   1.3e-09   1.7e-06       3      46 ..      37      80 ..      35      83 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.3e-09
     zf-ISL3  3 hrCPnCgsktvvkhgkkerrvrhlpiggkrvyLrlrkrRyrCke 46
                 +CP+C +++  +h+ ++rr++hlp+ g+ ++L +  r ++C++
  EHU01446.1 37 AQCPECLKRSSSVHSCRRRRIQHLPCSGQALWLIFAIRHWYCRN 80
                78*****************************************8 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   3.4e-08   4.7e-05       7      34 ..     301     327 ..     296     330 .. 0.94
   2 ?   -2.9   0.1       5.4   7.4e+03      27      37 ..     379     389 ..     377     393 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.4e-08
      HTH_29   7 llaeGvstvsqiAkllglsrrtvyrwlk 34 
                 l+++G++ +++i +++glsr tv+rw+ 
  EHU01446.1 301 LHKKGCG-IREISRITGLSRVTVRRWIQ 327
                 8*****9.******************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.4
      HTH_29  27 rtvyrwlkrfe 37 
                 +tv++++  ++
  EHU01446.1 379 TTVRDAVTKWR 389
                 55555555444 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.4e-07   0.00088       4      29 ..     308     333 ..     306     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.4e-07
      HTH_17   4 veEaAelLgvsrstvyrlirrgelpa 29 
                 + E++++ g+sr tv+r+i+++ +p 
  EHU01446.1 308 IREISRITGLSRVTVRRWIQSKAFPE 333
                 789********************986 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.55   7.6e+02      23      40 ..     123     140 ..     114     141 .. 0.87
   2 !   16.6   0.2   4.5e-06    0.0062       7      40 ..     292     324 ..     284     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.55
                 -STTTSSSS---SSSS-- CS
       HTH_7  23 siskIAkevnisRsTvYR 40 
                 ++++IA  v+is  T+ R
  EHU01446.1 123 KRAAIASGVQISADTLLR 140
                 5789***********988 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.5e-06
                 -HHHHGGGGSSTTTT--STTTSSSS---SSSS-- CS
       HTH_7   7 skndinrvvkLleeGisiskIAkevnisRsTvYR 40 
                  + ++++v  L+++G  i++I +++++sR Tv R
  EHU01446.1 292 YQ-RWAEVDSLHKKGCGIREISRITGLSRVTVRR 324
                 33.5***************************977 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.51     7e+02      29      48 ..     188     215 ..     185     217 .. 0.67
   2 !   14.7   0.5   1.5e-05      0.02      20      39 ..     308     327 ..     289     329 .. 0.87
   3 ?   -1.9   0.0       2.3   3.2e+03      30      44 ..     377     390 ..     377     395 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.51
      HTH_23  29 vsrrTvyrwlkry.......r.eeGleg 48 
                 + +rT+  w k+y       r ++G+ +
  EHU01446.1 188 REQRTLAAWFKKYpeiqvvsRdRGGIYA 215
                 5689*********655544422455655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.5e-05
      HTH_23  20 vreIAreLgvsrrTvyrwlk 39 
                 +reI+r+ g sr Tv+rw++
  EHU01446.1 308 IREISRITGLSRVTVRRWIQ 327
                 89****************97 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.3
      HTH_23  30 srrTvyrwlkryree 44 
                 s+ Tv+  + ++r +
  EHU01446.1 377 SETTVRDAVTKWR-K 390
                 6778888888885.3 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.8e-05     0.025      26      48 ..     305     327 ..     303     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
                   ---HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrls 48 
                   g+ ++EI++++g+s +tV+++++
    EHU01446.1 305 GCGIREISRITGLSRVTVRRWIQ 327
                   8889*****************97 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   7.1e-05     0.098      15      40 ..     300     325 ..     296     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
      HTH_38  15 rllaeGlslreIArrLgrspsTIsRE 40 
                  l+++G+++reI r+ g s+ T+ R 
  EHU01446.1 300 SLHKKGCGIREISRITGLSRVTVRRW 325
                 69*********************995 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.3e-05     0.073       6      30 ..     308     332 ..     307     335 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
  Phage_AlpA   6 lreVeqktglsrstiYrlikdgeFP 30 
                 +re+  +tglsr t+ r+i+ + FP
  EHU01446.1 308 IREISRITGLSRVTVRRWIQSKAFP 332
                 689999******************* PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.5e-05       0.1       2      21 ..     308     327 ..     307     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHTTTHHHHHHHHH CS
        MerR   2 IgevAeltGvsprtLRyYEr 21 
                 I+e++++tG+s  t+R++ +
  EHU01446.1 308 IREISRITGLSRVTVRRWIQ 327
                 99****************86 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4     2e+03      10      34 ..     117     144 ..     113     149 .. 0.72
   2 ?   14.0   0.1   3.1e-05     0.042      14      34 ..     307     327 ..     296     328 .. 0.86
   3 ?   -2.8   0.1       5.4   7.5e+03      25      38 ..     377     390 ..     375     391 .. 0.77
   4 ?   -3.5   0.2       8.7   1.2e+04      26      33 ..     405     412 ..     404     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
      HTH_28  10 aaGh..svreaArelgisrrtv.yrWik 34 
                 a G+   ++++A  ++is +t+ +r ++
  EHU01446.1 117 AGGEagKRAAIASGVQISADTLlRRVVQ 144
                 5555557788999999999999666665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.1e-05
      HTH_28  14 svreaArelgisrrtvyrWik 34 
                  +re++r+ g+sr tv+rWi+
  EHU01446.1 307 GIREISRITGLSRVTVRRWIQ 327
                 89******************8 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.4
      HTH_28  25 srrtvyrWikryee 38 
                 s++tv++ + ++++
  EHU01446.1 377 SETTVRDAVTKWRK 390
                 67888888888876 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 8.7
      HTH_28  26 rrtvyrWi 33 
                  ++v+rW+
  EHU01446.1 405 ASRVSRWL 412
                 68999**8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.7   2.4e+03      11      30 ..     215     234 ..     214     236 .. 0.85
   2 ?   10.7   0.0   0.00026      0.36      17      40 ..     304     327 ..     300     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.7
                 T-CTTBSS-BHHHHHHHHTS CS
    HTH_IclR  11 alaeapqeltlselArrtgl 30 
                 ala+++++   +++A+r +l
  EHU01446.1 215 ALAARDGAPQATQVADRWHL 234
                 69999999999****98665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00026
                 SS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR  17 qeltlselArrtglpkStvhRlLq 40 
                  + +++e++r tgl++ tv+R +q
  EHU01446.1 304 KGCGIREISRITGLSRVTVRRWIQ 327
                 67899****************877 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3      0.11   1.5e+02      21      38 ..     125     142 ..     124     144 .. 0.91
   2 ?    7.4   0.1    0.0027       3.8      21      36 ..     309     324 ..     307     327 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  HTH_AsnC-type  21 aeLAervGlSestvlrRv 38 
                    a++A  v +S++t lrRv
     EHU01446.1 125 AAIASGVQISADTLLRRV 142
                    68999************8 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0027
  HTH_AsnC-type  21 aeLAervGlSestvlr 36 
                    +e+++ +GlS+ tv+r
     EHU01446.1 309 REISRITGLSRVTVRR 324
                    8*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4048.86
//
Query:       EHU01447.1  [L=236]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-15   55.9   1.5    1.1e-14   54.5   1.5    1.8  1  zf-IS66          zinc-finger binding domain of transposase IS
    4.7e-11   43.3   9.0    4.7e-11   43.3   9.0    2.2  2  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
    3.1e-10   40.0   5.9    1.6e-09   37.6   0.1    2.2  2  DDE_Tnp_IS66     Transposase IS66 family
     0.0034   16.6   0.7     0.0052   16.0   0.7    1.3  1  Phage_HK97_TLTM  Tail length tape measure protein
     0.0039   17.5   5.0      0.029   14.7   0.5    2.6  2  Csm1_N           Csm1 N-terminal domain
     0.0047   16.6   0.8     0.0054   16.4   0.8    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
  ------ inclusion threshold ------
       0.01   16.1   2.8      0.018   15.3   2.8    1.3  1  Troponin         Troponin
      0.012   15.4   8.0      0.018   14.8   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.013   14.1   7.4      0.015   13.8   7.4    1.1  1  FUSC             Fusaric acid resistance protein family
      0.019   14.8   9.7      0.027   14.3   9.7    1.1  1  ERM              Ezrin/radixin/moesin family
      0.024   14.3   3.2        0.1   12.3   0.5    2.2  2  LXG              LXG domain of WXG superfamily
      0.028   13.6   1.5      0.037   13.2   1.5    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.067   13.3   1.8       0.39   10.9   0.1    2.5  2  Zn-ribbon_8      Zinc ribbon domain
      0.092   12.8  10.9       0.16   12.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.14   12.0   2.3       0.25   11.2   2.3    1.4  1  RD3              RD3 protein
       0.16   12.7   2.3       0.41   11.4   2.3    1.7  1  LCE6A            Late cornified envelope protein 6A family
       0.21   10.8   3.0        0.3   10.3   3.0    1.1  1  TMPIT            TMPIT-like protein
       0.38   10.3   8.1       0.93    9.0   8.1    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
       0.42   10.9   1.5         29    5.0   0.2    2.7  3  DUF948           Bacterial protein of unknown function (DUF94
       0.62   10.2   8.3        1.3    9.2   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
       0.81    9.5   3.2        4.2    7.2   0.2    2.2  2  Mt_ATP-synt_D    ATP synthase D chain, mitochondrial (ATP5H)
       0.85   10.0   7.3      0.095   13.0   2.4    1.9  2  HalX             HalX domain
        1.5    8.6   4.3        3.4    7.4   4.2    1.6  2  USP8_interact    USP8 interacting
        1.6    9.0   8.9        2.4    8.5   8.9    1.2  1  OmpH             Outer membrane protein (OmpH-like)
          2    9.1   9.7        5.7    7.6   2.4    3.0  2  SlyX             SlyX
        2.2    8.9   9.9        3.7    8.2   0.5    2.6  2  MerR-DNA-bind    MerR, DNA binding
          3    7.9   8.8        3.2    7.8   0.7    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding


Domain annotation for each model (and alignments):
>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   1.5   1.6e-17   1.1e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.6e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01447.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 79*******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   9.0   7.1e-14   4.7e-11       1      68 [.      46     121 ..      46     122 .. 0.86
   2 ?   -0.7   0.7         4   2.6e+03      48      57 ..     223     232 ..     145     235 .. 0.65

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 7.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU01447.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 4
  LZ_Tnp_IS66  48 kskkrkkrgR 57 
                  ++++r +r+R
   EHU01447.1 223 SRATRTRRRR 232
                  2334444444 PP

>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.6     0.055        36     167     222 ..      34      92 ..      19     121 .. 0.48
   2 !   37.6   0.1   2.4e-12   1.6e-09       2      41 ..     187     226 ..     186     233 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.055
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkvl 222
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++vl
    EHU01447.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEVL 92 
                   57777777778888888888863344442233333333333333333333.222222222 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 2.4e-12
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgt 41 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+t
    EHU01447.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRAT 226
                   789***********************************98 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.7   7.9e-06    0.0052      47     106 ..      34      90 ..      23     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.9e-06
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01447.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      577789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   4.4e-05     0.029      22      56 ..      23      57 ..      13      71 .. 0.81
   2 ?    4.2   0.5      0.08        53      33      53 ..      71      91 ..      67      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.4e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01447.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.08
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01447.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   8.1e-06    0.0054     144     223 ..      10     102 ..       3     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.1e-06
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...........e 223
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +           +
    EHU01447.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgeqhdpalpQ 102
                   33444555555555666666677789999999999988886655439999**************************99955443322222221 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   2.8   2.7e-05     0.018      46     120 ..       9      97 ..       3     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU01447.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666666 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   8.0   2.7e-05     0.018     114     197 ..      10      97 ..       7     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.7e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyEe 197
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ +
  EHU01447.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 57888888777776555777788***************9862678999**********************************999865 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   7.4   2.3e-05     0.015     213     295 ..       4      92 ..       1     127 [. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01447.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 44889***********************************999**********999996677888888888888888888887766441 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   9.7   4.1e-05     0.027      17     100 ..       5      90 ..       3     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.1e-05
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01447.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66889999999**********************************999999887335577789*******************9875 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00016       0.1     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.9   0.2      0.12        77      97     131 ..      63      97 ..      61     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01447.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01447.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999998876555 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.5   5.6e-05     0.037      24      77 ..      37      92 ..       9     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU01447.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                579***************5555323335666777788888999********99865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00059      0.39      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?    1.0   0.2      0.71   4.7e+02       7      14 ..     167     174 ..     153     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00059
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01447.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.71
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01447.1 167 ACCSCDHI 174
                  35555555 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  10.9   0.00024      0.16      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01447.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   0.00037      0.25      45     127 ..      16      95 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
         RD3  45 keeeerkaetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevlaenevevkeivelfksvlkevleer 127
                  +e++   ++ ++Y++l s+        ase ++L  l ak++  + gk  +++re++a +  e++e +++++  + evl e+
  EHU01447.1  16 LQEQQTTIRKMAEYNRLLSQR---VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQ 95 
                 566777788889******965...455799*************************************9999999999998776 PP

>> LCE6A  Late cornified envelope protein 6A family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3   0.00062      0.41      17      71 ..     115     172 ..     101     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00062
       LCE6A  17 cspPkrknpslapcsapCgasc....sgGCsstsqrpraqkpvssrrahrkkprCLsGd 71 
                  s+P r+ ++l+p  ++C+a      + GC+ ++q   + ++    + +r+k+ C s d
  EHU01447.1 115 ASLP-RETLTLSPAETTCPACGgelnALGCDVSEQLELISSAFKVIETQRPKLACCSCD 172
                 3566.56789999999999877777788*******99999999999*********9876 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   0.00045       0.3      12      93 ..      13      96 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkkn 93
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l +++
  EHU01447.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQH 96
                556666778899999999999999999999999999999999999977442244455666666666666666668887777664 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.1    0.0014      0.93      70     154 ..      13      99 ..       2     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlteea 154
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + a
    EHU01447.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDPA 99 
                   55667777777777777777777888999999999999999998874477888899************************9988744 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.089        59      23      67 ..      11      54 ..       9      59 .. 0.78
   2 ?    5.0   0.2     0.043        29      26      55 ..      65      94 ..      50     101 .. 0.72
   3 ?   -1.5   0.0       4.8   3.2e+03      56      76 ..     138     158 ..     136     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.089
      DUF948 23 klkktldeaaatieelekqvdpilkevedllakvnelledvnekl 67
                +l+ +l+e ++ti+++ +  + +++ v++  +++n+ l+ +  kl
  EHU01447.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINR-LKALVAKL 54
                678889999999999999999999999999999999.44444444 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.043
      DUF948 26 ktldeaaatieelekqvdpilkevedllak 55
                k+ +++a++++e e+++ ++ +e++++l +
  EHU01447.1 65 KLREKTARQVREAEERISALQEEMAEVLGE 94
                555667777777777777777777777765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.8
      DUF948  56 vnelledvneklekvdpltea 76 
                  n+l  dv+e+le + + ++ 
  EHU01447.1 138 LNALGCDVSEQLELISSAFKV 158
                 688888999999999888875 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0019       1.3      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    4.8   1.1     0.044        29      22      37 ..      74      89 ..      73      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0019
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01447.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.044
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01447.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2    0.0063       4.2      79     124 ..       5      51 ..       1      65 [. 0.76
   2 ?    3.1   0.8      0.12        79      87     119 ..      58      90 ..      50      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0063
                    ----TTT.THHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-XX CS
  Mt_ATP-synt_D  79 ypedkyt.eevdaeekevkkeikefkeeskkrieelekeleklksll 124
                    yp ++ +  ++ +e+++  ++++e++    +r++ + +e+++lk+l+
     EHU01447.1   5 YPDENARlRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALV 51 
                    55555555556667777888899*********************986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
                    HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_D  87 evdaeekevkkeikefkeeskkrieelekelek 119
                    +  + +++  ++ +  + e+++ri+ l++e+++
     EHU01447.1  58 QFGKSSEKLREKTARQVREAEERISALQEEMAE 90 
                    556778888999999999999999999999986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       7.8   5.2e+03      43      57 ..      11      25 ..       7      33 .. 0.49
   2 ?   13.0   2.4   0.00014     0.095       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.8
        HalX 43 rleelraqldetlde 57
                rl +l ++  +t+  
  EHU01447.1 11 RLRALLQEQQTTIRK 25
                444444444444443 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00014
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU01447.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.2    0.0051       3.4       2      49 ..      12      61 ..      11      92 .. 0.79
   2 ?   -0.8   0.2       1.7   1.1e+03       6      20 ..      74      88 ..      54     113 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0051
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHU01447.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgK 61
                   9***************************************9998766552 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.7
  USP8_interact  6 vqkqqqkiaelkkev 20
                   v++ +++i+ l++e+
     EHU01447.1 74 VREAEERISALQEEM 88
                   222222222222222 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.9    0.0036       2.4       9      86 ..      14      95 ..      10     109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0036
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU01447.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                56777788888899999999*********************966655.23466666666668888888877554444555544 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.4    0.0086       5.7      22      53 ..      12      43 ..       7      65 .. 0.88
   2 ?    3.3   2.5      0.19   1.3e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0086
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01447.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                7778899******************9887665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.19
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01447.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888999998888887654 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.4     0.097        65      21      64 ..      13      56 ..      10      57 .. 0.84
   2 ?    8.2   0.5    0.0055       3.7      32      60 ..      61      89 ..      58      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.097
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHU01447.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   788866666777777888***********************997 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0055
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHU01447.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   5788999*****************98655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.7    0.0047       3.2      23      69 ..      11      57 ..       7      62 .. 0.87
   2 ?    3.8   2.2     0.087        58      45      70 ..      63      88 ..      58      91 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+++
  EHU01447.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                5666678899*************************999999999876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.087
  TMF_DNA_bd 45 lekeikelkkkleklekeleeleerl 70
                +ek  +++ +++++ e+ ++ l+e++
  EHU01447.1 63 SEKLREKTARQVREAEERISALQEEM 88
                56666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1702  (0.09493); expected 358.6 (0.02)
Passed bias filter:                      946  (0.0527637); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 1681.09
//
Query:       EHU01448.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-39  133.8   0.0      2e-39  133.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.1e-43     2e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.1e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01448.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDLIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 847.70
//
Query:       EHU01449.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01449.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01449.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01449.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01449.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 796.59
//
Query:       EHU01450.1  [L=71]
Description: KikA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.3   0.0     0.0021   18.1   0.0    1.0  1  TrbM      TrbM


Domain annotation for each model (and alignments):
>> TrbM  TrbM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-07    0.0021      23      63 ..      13      58 ..       7      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-07
        TrbM 23 geCsPsldkyFsikkkk.....wsdtveaRrnFLklCPvseedpem 63
                g C   ++ +F+i k k       +t  aR++FL  C  ++e+  +
  EHU01450.1 13 GSCDGPIKDFFNIVKFKhgsfkKGATADARKAFLMSCEGASENKAI 58
                789999*********9988876679************876653332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 578.32
//
Query:       EHU01451.1  [L=95]
Description: hypothetical protein CKS_3879 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0091   15.4   0.2     0.0095   15.3   0.2    1.0  1  DUF4407   Domain of unknown function (DUF4407)
  ------ inclusion threshold ------
      0.028   14.5   0.8      0.037   14.1   0.8    1.1  1  YebO      YebO-like protein
      0.041   14.5   1.9      0.054   14.1   1.9    1.2  1  SlyX      SlyX
      0.051   13.7   1.1      0.059   13.5   1.1    1.1  1  Nup54     Nucleoporin complex subunit 54
      0.083   12.3   0.5      0.092   12.1   0.5    1.1  1  FliD_C    Flagellar hook-associated protein 2 C-terminus


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   2.7e-06    0.0095     130     172 ..      15      64 ..       3      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
     DUF4407 130 a...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk....g 172
                 +   l++++++ ++qi+al+  +++ae rl++++ ++++e ++++     
  EHU01451.1  15 DavaLSNRISDQQKQINALSVRLQSAEHRLSQQESAFRSEQTQNSsycyL 64 
                 133499**********************************9987655551 PP

>> YebO  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.8     1e-05     0.037      25      64 ..      14      53 ..       9      65 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
        YebO 25 neqieLleelleqqkrQnaLLrrLaeakkeqsedveeksd 64
                n+ ++L + + +qqk+ naL  rL  a++  s+++++  +
  EHU01451.1 14 NDAVALSNRISDQQKQINALSVRLQSAEHRLSQQESAFRS 53
                899********************99888765555443322 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.9   1.5e-05     0.054      21      59 ..      18      56 ..       9      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX 21 eLndvvaeqqqqidrlqrqlrllaerlkeleessgasea 59
                +L++ + +qq+qi +l  +l+  + rl++ e++ ++++ 
  EHU01451.1 18 ALSNRISDQQKQINALSVRLQSAEHRLSQQESAFRSEQT 56
                69999**********************999988776654 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.1   1.7e-05     0.059      33      69 ..      18      54 ..      17      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Nup54 33 dLakRvkaQqkevaqhrerlkeisdrleeleqkhqle 69
                +L++R  +Qqk+++++  rl++ + rl++ e++   e
  EHU01451.1 18 ALSNRISDQQKQINALSVRLQSAEHRLSQQESAFRSE 54
                599*************************999654443 PP

>> FliD_C  Flagellar hook-associated protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   2.6e-05     0.092     190     231 ..      10      51 ..       2      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
                 SHHHHHHHHXXXXHHHHHHHHHHHHHCHHHHHHHHHHHHHHH CS
      FliD_C 190 gtlqtasknltkqikdldkkiedldkrletleerlkkqfaal 231
                  ++q++   l ++i+d +k+i++l+ rl++ e rl +q +a 
  EHU01451.1  10 CATQNDAVALSNRISDQQKQINALSVRLQSAEHRLSQQESAF 51 
                 5678888899****************************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1347  (0.0751297); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 813.66
//
Query:       EHU01452.1  [L=61]
Description: hypothetical protein CKS_3880 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-15   55.3   0.0    5.5e-15   55.1   0.0    1.1  1  RHH_3     Ribbon-helix-helix domain
  ------ inclusion threshold ------
      0.015   15.7   0.0      0.017   15.6   0.0    1.1  1  FhuF      Ferric iron reductase FhuF-like transporter
      0.019   14.9   0.0      0.022   14.7   0.0    1.2  1  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> RHH_3  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   9.2e-19   5.5e-15       1      43 [.       8      50 ..       8      51 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 9.2e-19
       RHH_3  1 nktrttvsidpelaekLkaLSekTrIprSklldeAiellLekY 43
                n++r+t+s+d+ l+   +aL +kTrIp+S+lldeAie+lL k+
  EHU01452.1  8 NRRRFTSSLDNQLVPLFDALAAKTRIPKSRLLDEAIEDLLVKH 50
                8***************************************887 PP

>> FhuF  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   2.8e-06     0.017      81     115 ..       8      41 ..       2      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
                 GSHHHHIIIIIIIHHHHHHHHHHTTSS-HHHHHHH CS
        FhuF  81 lreevfyglfvnhlapliealaaagglsekllWsn 115
                 +r ++f++ ++n+l pl++alaa +++++++l+  
  EHU01452.1   8 NR-RRFTSSLDNQLVPLFDALAAKTRIPKSRLLDE 41 
                 34.69*************************99854 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.7e-06     0.022       5      37 ..      15      47 ..      11      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-06
                EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH CS
       RHH_1  5 rldeellerLdelarrrgrSrSelIReAlreyl 37
                +ld +l+ ++d+la++++  +S l+ eA++++l
  EHU01452.1 15 SLDNQLVPLFDALAAKTRIPKSRLLDEAIEDLL 47
                89999*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 500.35
//
Query:       EHU01453.1  [L=150]
Description: putative resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-13   50.5   1.6    4.9e-13   49.4   1.6    1.6  1  Resolvase     Resolvase, N terminal domain
    9.6e-06   25.6   1.1    0.00062   19.8   0.1    2.3  2  HTH_7         Helix-turn-helix domain of resolvase
    0.00018   21.2   0.1    0.00043   20.0   0.1    1.7  1  HTH_23        Homeodomain-like domain
    0.00058   19.2   0.1     0.0017   17.7   0.2    1.7  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0046   16.7   0.6     0.0094   15.7   0.6    1.5  1  LacI          Bacterial regulatory proteins, lacI family
     0.0057   16.4   0.3     0.0057   16.4   0.3    1.7  2  HTH_38        Helix-turn-helix domain
     0.0097   16.0   1.3      0.013   15.6   0.1    1.8  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.032   14.5   0.0    1.6  1  HTH_Tnp_1     Transposase
      0.017   15.1   0.1      0.056   13.4   0.1    1.8  2  HTH_6         Helix-turn-helix domain, rpiR family
      0.021   14.5   0.0      0.052   13.2   0.0    1.7  1  Sigma70_r4_2  Sigma-70, region 4
      0.029   14.4   0.5      0.051   13.6   0.1    1.6  2  HTH_35        Winged helix-turn-helix DNA-binding
      0.041   13.3   0.0      0.049   13.1   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
      0.098   12.7   2.3       0.11   12.5   0.1    2.3  3  HTH_29        Winged helix-turn helix
       0.15   12.2   0.9        2.9    8.0   0.2    2.8  3  HTH_22        HTH domain
          2    8.8   8.4        7.9    6.9   6.7    2.6  2  HTH_31        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   1.6   4.1e-16   4.9e-13      55     146 .]       2     107 ..       1     107 [. 0.87

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 4.1e-16
                 HHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEESS.............SS-.....---HHHHHHHHHHHHHHHHHHHHHCT-TTH CS
   Resolvase  55 rllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvsldeg...........idt.....stpmgrlllqilaalaeferelirertkeg 136
                 rll+++++  gd +++e++dRL+R     + +l ++++ek++ ++sld +             +      t++++++l++laa+a+ +  ++r+r++eg
  EHU01453.1   2 RLLNDAEK--GDLILIEQVDRLSRLdDEGWQQLKRMMQEKNLAIISLDLPtsyaalmphgsD-EftrsmLTAINSMMLDMLAAIARKDYTDRRRRQQEG 97 
                 89******..**************9788899999999***********85577777666640.1555547777999*********************** PP

                 HHHHHHHHHC CS
   Resolvase 137 laaakakGkk 146
                 +++ak+kG++
  EHU01453.1  98 VRKAKEKGVY 107
                 ********75 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.033        39       2      21 ..      20      39 ..      20      43 .. 0.88
   2 !   19.8   0.1   5.2e-07   0.00062       1      41 [.     109     147 ..     109     150 .] 0.93

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.033
                ---SS-HHHHGGGGSSTTTT CS
       HTH_7  2 RpsklskndinrvvkLleeG 21
                R s l+++++++++++ +e+
  EHU01453.1 20 RLSRLDDEGWQQLKRMMQEK 39
                7889999*********9997 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.2e-07
                 S---SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS--S CS
       HTH_7   1 GRpsklskndinrvvkLleeGisiskIAkevnisRsTvYRy 41 
                 GR ++ +k+  + ++ L+ +G sis++A+  ++s  Tv R+
  EHU01453.1 109 GRMPDQNKH--DLIRSLRHQGKSISETARLAGVSERTVTRV 147
                 888999999..***************************887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   3.6e-07   0.00043      14      37 ..     123     147 ..     113     150 .] 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.6e-07
      HTH_23  14 la.eGlsvreIAreLgvsrrTvyrw 37 
                 l+ +G+s++e Ar+ gvs+rTv r+
  EHU01453.1 123 LRhQGKSISETARLAGVSERTVTRV 147
                 4426******************997 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         6   7.2e+03      40      48 ..      28      36 ..      26      37 .. 0.75
   2 !   17.7   0.2   1.4e-06    0.0017      22      47 ..     121     147 ..     116     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6
  HTH_Tnp_ISL3 40 SwtTVwril 48
                  +w  ++r++
    EHU01453.1 28 GWQQLKRMM 36
                  688888886 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.4e-06
  HTH_Tnp_ISL3  22 ellles.rsvkavArqlgvSwtTVwri 47 
                   ++l++  +s+++ Ar+ gvS++TV r+
    EHU01453.1 121 RSLRHQgKSISETARLAGVSERTVTRV 147
                   67788889****************996 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.6   7.9e-06    0.0094       2      19 ..     130     147 ..     129     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.9e-06
                 HHHHHHHCTS-HHHHHHH CS
        LacI   2 ikDVArlAGVSkaTVSrv 19 
                 i + ArlAGVS  TV+rv
  EHU01453.1 130 ISETARLAGVSERTVTRV 147
                 7899*************8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       6.4   7.7e+03      23      28 ..      79      84 ..      79      85 .. 0.78
   2 !   16.4   0.3   4.8e-06    0.0057      13      41 ..     120     148 ..     118     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.4
      HTH_38 23 lreIAr 28
                l++IAr
  EHU01453.1 79 LAAIAR 84
                589999 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.8e-06
      HTH_38  13 IerllaeGlslreIArrLgrspsTIsREl 41 
                 I  l+ +G+s++e Ar+ g+s  T+ R  
  EHU01453.1 120 IRSLRHQGKSISETARLAGVSERTVTRVS 148
                 8889**********************976 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       5.6   6.6e+03      46      50 ..      89      93 ..      86      99 .. 0.62
   2 !   15.6   0.1   1.1e-05     0.013       9      31 ..     123     146 ..     118     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.6
      HTH_28 46 prrrr 50
                +rrrr
  EHU01453.1 89 DRRRR 93
                45554 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.1e-05
      HTH_28   9 la.aGhsvreaArelgisrrtvyr 31 
                 l  +G+s++e+Ar+ g+s+rtv r
  EHU01453.1 123 LRhQGKSISETARLAGVSERTVTR 146
                 453677****************87 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.7e-05     0.032       5      39 ..     109     143 ..     107     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
   HTH_Tnp_1   5 rrwsdefKariVreslepgksvsevArrhgvspnq 39 
                  r +d+ K  ++r    +gks+se+Ar  gvs+ +
  EHU01453.1 109 GRMPDQNKHDLIRSLRHQGKSISETARLAGVSERT 143
                 57799***************************976 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.8   3.3e+03      58      71 ..      24      37 ..      18      41 .. 0.73
   2 ?   13.4   0.1   4.7e-05     0.056      34      57 ..     127     150 .]     116     150 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.8
                -S-SSHHHH--HHH CS
       HTH_6 58 LGfkGFselklaLa 71
                L+ +G+++lk  ++
  EHU01453.1 24 LDDEGWQQLKRMMQ 37
                77889999996655 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.7e-05
                 T--HHHHHHHTT--HHHHHHHH-- CS
       HTH_6  34 elsikalAkaaavSeativrfakk 57 
                  +si++ A  a+vSe t++r++k+
  EHU01453.1 127 GKSISETARLAGVSERTVTRVSKS 150
                 579*******************96 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.3e-05     0.052      25      43 ..     126     144 ..     122     146 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
                   S---HHHHHHHHT--HHHH CS
  Sigma70_r4_2  25 eglsykEIAellgisegtV 43 
                   +g+s+ E+A+l g+se+tV
    EHU01453.1 126 QGKSISETARLAGVSERTV 144
                   8*****************9 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.6   7.9e+03       8      15 ..      79      86 ..      77     101 .. 0.61
   2 ?   13.6   0.1   4.2e-05     0.051       3      35 ..     115     147 ..     113     150 .] 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.6
      HTH_35  8 iAaLrkrg 15
                 Aa+ ++ 
  EHU01453.1 79 LAAIARKD 86
                34444443 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.2e-05
      HTH_35   3 hpadIiAaLrkrgttLaalsreaglssstlsna 35 
                 +++d i +Lr +g ++++ +r ag s+ t++++
  EHU01453.1 115 NKHDLIRSLRHQGKSISETARLAGVSERTVTRV 147
                 789**************************9987 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.1e-05     0.049      22      80 ..      21      72 ..      12     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-05
                  HHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHH CS
  AP_endonuc_2 22 vselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaa 80
                   s+l+de+ ++l+++++e +l i sl l+t + ++  + ++       +++++++ + +
    EHU01453.1 21 LSRLDDEGWQQLKRMMQEKNLAIISLDLPTSYAALMPH-GSD------EFTRSMLTAIN 72
                  34449*************************99998774.222......34444444444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.3   8.8e+03      35      45 ..      23      33 ..      20      34 .. 0.68
   2 ?   -1.6   0.1       2.3   2.8e+03      37      47 ..      94     105 ..      88     113 .. 0.58
   3 ?   12.5   0.1   9.4e-05      0.11      10      32 ..     126     147 ..     119     150 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.3
      HTH_29 35 rfeegGlaall 45
                r + +G++ l+
  EHU01453.1 23 RLDDEGWQQLK 33
                66777887776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.3
      HTH_29  37 eegGlaalld.r 47 
                 +++G++++++ +
  EHU01453.1  94 QQEGVRKAKEkG 105
                 667766665533 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 9.4e-05
      HTH_29  10 eGvstvsqiAkllglsrrtvyrw 32 
                 +G s +s+ A+l g+s+rtv r+
  EHU01453.1 126 QGKS-ISETARLAGVSERTVTRV 147
                 6776.***************997 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.32   3.8e+02      16      29 ..      31      44 ..      16      46 .. 0.66
   2 ?    0.2   0.0      0.68   8.1e+02      21      39 ..      90     108 ..      71     110 .. 0.69
   3 ?    8.0   0.2    0.0024       2.9      12      58 ..     103     144 ..      95     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.32
      HTH_22 16 pverltkeekieiv 29
                +++r+ +e++++i+
  EHU01453.1 31 QLKRMMQEKNLAII 44
                35667777777776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.68
      HTH_22  21 tkeekieivraLdekGiFl 39 
                  + + +e vr+ +ekG++ 
  EHU01453.1  90 RRRRQQEGVRKAKEKGVYR 108
                 4566778899999999986 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0024
      HTH_22  12 dlgkpverltkeekieivraLdekGiFllkgavekvAekLgiSraTv 58 
                 ++g+   r+  + k +++r+L ++G     +++++ A+  g+S+ Tv
  EHU01453.1 103 EKGVYRGRMPDQNKHDLIRSLRHQG-----KSISETARLAGVSERTV 144
                 567777899****************.....89999999999999998 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.5   5.4e+03      48      63 ..      16      31 ..      14      35 .. 0.67
   2 ?    6.9   6.7    0.0066       7.9      13      34 ..     118     147 ..      90     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.5
      HTH_31 48 ealaralgldpaerae 63
                e++ r+ +ld++ +++
  EHU01453.1 16 EQVDRLSRLDDEGWQQ 31
                6667777777776665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0066
      HTH_31  13 a........GLsqeevAerlgvsestlsrl 34 
                          G s  e A+++gvse t++r+
  EHU01453.1 118 DlirslrhqGKSISETARLAGVSERTVTRV 147
                 044444445*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 1348.72
//
Query:       EHU01454.1  [L=293]
Description: IncW-like replication protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  103.5   0.0    1.5e-29  103.1   0.0    1.2  1  RepA_C    Plasmid encoded RepA protein


Domain annotation for each model (and alignments):
>> RepA_C  Plasmid encoded RepA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   8.6e-34   1.5e-29       2     154 ..      82     226 ..      81     234 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 8.6e-34
      RepA_C   2 PyGkyprliliylltravakasreveLGrsmseflqrlGlttvsgGarGtlkdireqvsriaaceltvrwedaeslgdektailedkilfederdseqg 100
                 PyG+ prl ++++ + a+ +++re+ +G+s sefl+ +G++    Ga    + +r q++ +aac l++ +++       + + +e+   + +++d++q 
  EHU01454.1  82 PYGAMPRLTFAWISSYALRNKTREISIGHSASEFLRLMGMEL--QGA--RHRTLRIQMQALAACRLQLGFKGRTY----NGQPVEQFDAWLKAGDTKQL 172
                 *****************************************9..788..789****************9988766....778899999*********** PP

      RepA_C 101 slfeselvlseaffkhlaehpvPidevalrelkktptslDiyiyLayrlyrldk 154
                 +l+   l lse +++ l e +vP+d+ al  lk+++ +lDiy +La rl+r++ 
  EHU01454.1 173 TLWPGTLTLSEGYYNGLIESAVPLDNRALHVLKGSALALDIYAWLAHRLHRIEG 226
                 ****************************************************53 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2385.21
//
Query:       EHU01455.1  [L=109]
Description: hypothetical protein CKS_3883 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-25   86.9   0.1      1e-24   86.6   0.1    1.1  1  KORA          TrfB plasmid transcriptional repressor
  ------ inclusion threshold ------
      0.052   13.1   0.0      0.083   12.5   0.0    1.3  1  GerE          Bacterial regulatory proteins, luxR family
      0.098   12.4   0.0       0.17   11.6   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   1.7e-28     1e-24       1      83 [.       9      94 ..       9      96 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.7e-28
        KORA  1 lteeeFeeiikgleelaeqtveiargvLVegkkqadvatelgltkqavsqavkrvwaahaere...epaglerVsvllpeeeaikV 83
                +t+ee+++++++++++++  +ei + vLV+g++ +dva+++g+tkq+v+  vkr+w++++ ++   e+++l +V+v+lpe  a kV
  EHU01455.1  9 MTQEEWDRLLPAMQTFTHLSTEIGHSVLVKGESNKDVAERVGRTKQNVGSTVKRIWDLYQSLAvdiEGEKLRKVDVWLPEKLALKV 94
                9************************************************************99999******************99 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05     0.083      14      41 ..      36      63 ..      34      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                HCTTS-HHHHHHHHTS-HHHHHHHHHHH CS
        GerE 14 laeGksnkeIAeelniSekTVkvhksni 41
                l++G+snk++Ae+ +  +++V + +++i
  EHU01455.1 36 LVKGESNKDVAERVGRTKQNVGSTVKRI 63
                89*******************9988887 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.9e-05      0.17      24      49 ..      37      62 ..      35      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
                  TS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 24 leglsykEIAellgisegtVksrlsR 49
                  ++g s k++Ae+ g + ++V s ++R
    EHU01455.1 37 VKGESNKDVAERVGRTKQNVGSTVKR 62
                  6899******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 916.47
//
Query:       EHU01456.1  [L=183]
Description: single-stranded DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-40  137.0   0.5    2.5e-40  136.7   0.5    1.1  1  SSB       Single-strand binding protein family
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.25   11.3   0.0    1.3  1  DUF4792   Domain of unknown function (DUF4792)


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.5   2.8e-44   2.5e-40       1      99 [.       6     105 ..       6     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 2.8e-44
                 ECEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEE.TTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEE CS
         SSB   1 vnkvilvGrlgkdpelrqtesGnavarftlatnrrfkd.qegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrysteiva 98 
                 vnkvilvG+lg+dpe+r++++G ava+++lat+++++d  +ge++e tewh+vv+fgklae++  yl+kGs+vy+eG+l+trk++d++ q+ryste+v+
  EHU01456.1   6 VNKVILVGNLGQDPEMRYMPNGGAVANLRLATSESWRDkATGEQKEVTEWHTVVIFGKLAEIAGVYLRKGSQVYIEGQLRTRKWQDKDQQDRYSTEVVV 104
                 7*************************************99**********************************************************9 PP

                 E CS
         SSB  99 e 99 
                 +
  EHU01456.1 105 S 105
                 8 PP

>> DUF4792  Domain of unknown function (DUF4792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05      0.25      14      56 ..      45      88 ..      39      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.8e-05
     DUF4792 14 plsvktnwseskklsveddshkewgyyLnkGSqvnisycvks.s 56
                 + ++++++e +++++  +  +  g yL kGSqv i+ + ++ +
  EHU01456.1 45 ATGEQKEVTEWHTVVIFGKLAEIAGVYLRKGSQVYIEGQLRTrK 88
                567788899999999999999***************98888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1648.28
//
Query:       EHU01457.1  [L=301]
Description: Mpr family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-11   42.9   0.0    5.7e-11   42.3   0.0    1.2  1  SprT-like      SprT-like family
  ------ inclusion threshold ------
      0.026   14.8   0.0       0.11   12.8   0.0    1.8  2  Peptidase_M91  Effector protein


Domain annotation for each model (and alignments):
>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   6.3e-15   5.7e-11       5     101 ..      56     155 ..      52     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 6.3e-15
   SprT-like   5 fkklddavfggqaaggvkiiwskrlnttaGranlkr....atvrhhasIeLseklldsrsedrllntLaHElcHlalfvisg.vrnnpHGaeFkawaak 98 
                 ++ +d+ +f+++ ++ + i+ + r ++t G ++++r     +++   +I +++ +   r+ +++l+tL+HE++H + f++ +  r+  H++e+ a++++
  EHU01457.1  56 YDFFDERLFNNE-LPPCLITLQ-REKRTYGYCSFQRfagrESGQMVDEIAMNPVYFSIRTIKATLSTLVHEMVHQWQFHFGKaGRRGYHNKEWAALMER 152
                 566788889888.888888888.77***********9999999999*********************************999456999*********** PP

   SprT-like  99 vek 101
                 v+ 
  EHU01457.1 153 VGL 155
                 975 PP

>> Peptidase_M91  Effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.18   1.6e+03      97     110 ..      48      61 ..      33      69 .. 0.73
   2 ?   12.8   0.0   1.2e-05      0.11      73     120 ..      99     144 ..      71     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.18
  Peptidase_M91  97 LyHElaHaydalng 110
                     y El Hayd+  +
     EHU01457.1  48 TYEELQHAYDFFDE 61 
                    5779******9866 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.2e-05
  Peptidase_M91  73 daeinynpafsseeegkegrPsavLyHElaHaydalngtlddgeydgk 120
                      ei +np + s+     +   ++L HE++H +++  g+  ++ y++k
     EHU01457.1  99 VDEIAMNPVYFSI--RTIKATLSTLVHEMVHQWQFHFGKAGRRGYHNK 144
                    4579999999999..444444477***********9999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2687.88
//
Query:       EHU01458.1  [L=132]
Description: ArdB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-08   34.5   0.1    2.3e-08   33.9   0.1    1.3  1  Antirestrict  Antirestriction protein


Domain annotation for each model (and alignments):
>> Antirestrict  Antirestriction protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   1.3e-12   2.3e-08       2      60 ..      44      99 ..      43     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.3e-12
  Antirestrict  2 dYsgglWefyelsngg.lymaPesderlrlvvkengfegevSadAaGiivtllalshlae 60
                   Y+gg We+++ +ng+ +++aP+    ++l+++ n f++ vSa  aGiiv+l+a+sh  +
    EHU01458.1 44 GYDGGCWEYITYENGAcAFIAPDG---YQLTLP-NYFDEPVSAKEAGIIVALYAYSHFCC 99
                  5***********998648*****9...888776.9******************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1157.65
//
Query:       EHU01459.1  [L=96]
Description: hypothetical protein CKS_3887 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 771.17
//
Query:       EHU01460.1  [L=176]
Description: ArdR family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1549.97
//
Query:       EHU01461.1  [L=421]
Description: RNA-directed DNA polymerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-43  146.9   0.0    1.4e-42  145.7   0.0    1.6  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.4e-15   57.1   2.1    3.2e-15   56.0   2.1    1.6  1  GIIM      Group II intron, maturase-specific domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.0   1.5e-46   1.4e-42       1     221 [.     115     320 ..     115     321 .. 0.95
   2 ?   -2.6   0.0      0.34   3.1e+03      99     124 ..     381     406 ..     371     410 .. 0.67

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 1.5e-46
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ipK+g g+ R +++++v ++++++++ + L+++l++++se+++gfrpgr   dav  ++++  ++ + ++++++Dl+k+Fd+v+++ l+ +l +   + 
  EHU01461.1 115 IPKPG-GGQRELGIPTVTDRLIQQALLQVLQPLLDPTFSEHSYGFRPGRRAQDAVLAAQAF--AQSGRRVVVDVDLEKFFDRVDHDILIGRLRKRIDDA 210
                 8****.***********************************************88666666..88*****************************88888 PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                  +i l++++l     ++ ++g   + +  k g+pqG++lSPll+n++++e+++el++r  g  ++rYaDD+ ++++s+ + q+++  +++ +++ +lk+
  EHU01461.1 211 GVIWLVRAYL----NAGIMDGG--TIIQRKLGTPQGGPLSPLLANVLLDEVDKELERR--GHSFVRYADDCNVYVNSRRAGQRVMALLVRLFNRLKLKV 301
                 8999999999....67789997..79999****************************8..*************************************** PP

                 EGGG-EEE.....ESSEEETTEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvt 221
                 n++K+ ++    ++ + k+LG+ 
  EHU01461.1 302 NEAKSAVA----SAFTRKFLGYA 320
                 ********....599******96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.34
                 .........................T CS
       RVT_1  99 tklinliksflstrsfsvrvngeesk 124
                 +++ ++++++l++r  +++++++ s+
  EHU01461.1 381 PRVWKTLEEWLRHRLRALQLKWSGSQ 406
                 46677788888888888888777544 PP

>> GIIM  Group II intron, maturase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   2.1   3.5e-19   3.2e-15       2      65 ..     339     401 ..     338     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.5e-19
        GIIM   2 krlkrkireltkrsskgvsleelirklnpilrGWanYyrlgvakrvfskldhyirrrLrrwllr 65 
                 +++++++r+lt+r+  g s+ e+i++l p+l GW +Y++l+++ rv ++l++++r+rLr+  l+
  EHU01461.1 339 AAFRHRVRKLTQRN-GGRSMTEVIQRLRPYLLGWRAYFSLAQTPRVWKTLEEWLRHRLRALQLK 401
                 78*********777.99******************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3251.47
//
Query:       EHU01462.1  [L=374]
Description: hypothetical protein CKS_3890 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-09   35.5   7.1    7.8e-06   25.4   0.4    2.5  2  Pentapeptide    Pentapeptide repeats (8 copies)
    1.4e-05   25.1   0.9    5.8e-05   23.2   0.4    2.2  2  Pentapeptide_4  Pentapeptide repeats (9 copies)
    0.00047   20.3   1.5     0.0013   18.9   1.5    1.8  1  Pentapeptide_3  Pentapeptide repeats (9 copies)


Domain annotation for each model (and alignments):
>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.4   1.3e-09   7.8e-06       2      40 .]     288     326 ..     287     326 .. 0.97
   2 !   21.1   1.4   2.9e-08   0.00017       2      37 ..     308     343 ..     308     343 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.3e-09
                   B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEECT CS
  Pentapeptide   2 nLsgAnLsganLsganlsgAnLtgAnlsgAdLsganLsg 40 
                   n++  +Lsg +L+  ++ + +Ltg+++ ++d   +n+s+
    EHU01462.1 288 NFQHSDLSGKSLRYIDFDNIDLTGSSFDDCDIYKCNFSD 326
                   99***********************************97 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.9e-08
                   B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEE CS
  Pentapeptide   2 nLsgAnLsganLsganlsgAnLtgAnlsgAdLsgan 37 
                   +L+g  +  ++  ++n+s+A+L+g++++++  +++n
    EHU01462.1 308 DLTGSSFDDCDIYKCNFSDAVLDGVTMNNTSIEDCN 343
                   7999999999999***************99999998 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   1.1e+04      27      47 ..      46      68 ..      38      71 .. 0.57
   2 !   23.2   0.4   9.7e-09   5.8e-05      16      70 ..     287     341 ..     284     349 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
  Pentapeptide_4 27 nFtecrl..snvnFdecnlsdvd 47
                    ++t  ++  ++++ + c+l+++ 
      EHU01462.1 46 TLTLMPAknNSMEQRACLLKESV 68
                    44444444455556667777665 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 9.7e-09
  Pentapeptide_4  16 vnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70 
                     +nF +++l + ++++++++n  ++ ++++d+d++++++ +a + g++ +n+ ++d
      EHU01462.1 287 INFQHSDLSGKSLRYIDFDNIDLTGSSFDDCDIYKCNFSDAVLDGVTMNNTSIED 341
                     5677776666666666666666666666666666666666666666666666544 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.5   2.1e-07    0.0013      12      47 ..     304     337 ..     286     343 .. 0.50

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.1e-07
  Pentapeptide_3  12 FrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     F++   +g+ sF+++d+  ++Fs+a  + +v+++++
      EHU01462.1 304 FDNIDLTGS-SFDDCDIYKCNFSDAVLD-GVTMNNT 337
                     333333333.333333333333333333.3333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2722.67
//
Query:       EHU01463.1  [L=45]
Description: InsA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-23   80.9   8.6    4.2e-23   80.8   8.6    1.0  1  Zn_Tnp_IS1       InsA N-terminal domain
     0.0008   19.1   0.3    0.00085   19.0   0.3    1.0  1  DpnI             Dam-replacing family
     0.0011   18.9   4.7     0.0014   18.5   4.7    1.2  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
     0.0018   18.2   0.7     0.0023   17.9   0.7    1.1  1  zinc-ribbons_6   zinc-ribbons
     0.0027   17.8   2.7       0.94    9.6   0.6    2.2  2  Zn-ribbon_8      Zinc ribbon domain
     0.0028   17.5   0.9     0.0035   17.2   0.9    1.1  1  C1_1             Phorbol esters/diacylglycerol binding domain
     0.0063   16.3   0.1     0.0063   16.3   0.1    1.4  1  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
     0.0069   16.9   1.8     0.0083   16.6   1.8    1.1  1  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
  ------ inclusion threshold ------
      0.014   15.3   0.1       0.02   14.8   0.1    1.2  1  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
      0.018   14.9   5.5      0.051   13.5   5.5    1.7  1  zinc_ribbon_4    zinc-ribbon domain
      0.023   14.5   0.2      0.031   14.2   0.2    1.2  1  RNA_POL_M_15KD   RNA polymerases M/15 Kd subunit
      0.027   14.2   0.9      0.028   14.1   0.9    1.1  1  TackOD1          Thaumarchaeal output domain 1
      0.058   13.3   0.1       0.12   12.3   0.1    1.5  1  VP_N-CPKC        Virion protein N terminal domain
      0.063   13.4   3.1       0.43   10.7   0.3    2.2  2  TRAF6_Z2         TNF receptor-associated factor 6 zinc finger
      0.075   13.7   0.8      0.075   13.7   0.8    2.1  2  zf-ISL3          zinc-finger of transposase IS204/IS1001/IS10
      0.077   13.2   2.7       0.56   10.5   3.0    1.9  2  C1_4             TFIIH C1-like domain
      0.085   12.7   1.1       0.55   10.1   1.2    1.9  1  zinc_ribbon_12   Probable zinc-ribbon domain
      0.091   12.9   0.8        9.3    6.4   0.1    2.0  2  DiS_P_DiS        Bacterial Peptidase A24 N-terminal domain
       0.13   12.2   6.4       0.23   11.4   6.4    1.3  1  Nudix_N_2        Nudix N-terminal
       0.23   11.6   7.2       0.56   10.4   7.2    1.6  1  zf-Dof           Dof domain, zinc finger
       0.27   11.3   1.7         14    5.8   0.1    1.9  2  HypA             Hydrogenase/urease nickel incorporation, met
       0.38   10.1   4.7       0.68    9.3   4.7    1.5  1  zf-TFIIB         Transcription factor zinc-finger
       0.47    9.9   5.6        3.3    7.2   0.3    2.1  2  Mu-like_Com      Mu-like prophage protein Com


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   8.6   5.4e-26   4.2e-23       1      35 []       1      35 [.       1      35 [. 0.99

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 5.4e-26
  Zn_Tnp_IS1  1 MAsVsihCPrCsstdVyRhGkstagHeRfrCrdCk 35
                MAsV++hCPrC+s+ VyRhG++++gH+RfrCrdC+
  EHU01463.1  1 MASVNVHCPRCQSALVYRHGQNPKGHDRFRCRDCH 35
                **********************************8 PP

>> DpnI  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   1.1e-06   0.00085      30      65 ..       4      40 ..       1      43 [. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-06
                HH---TTT--SS-EE--------E.EE-TTT--EEEE CS
        DpnI 30 knlyCpkCgskklsefennkpvaD.fyCesckeefeL 65
                 n++Cp C+s  + ++  n +  D f C++c+  f+L
  EHU01463.1  4 VNVHCPRCQSALVYRHGQNPKGHDrFRCRDCHRVFQL 40
                599*************99999999678*********9 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   4.7   1.9e-06    0.0014      19      45 ..       6      36 ..       3      37 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
  Zn_Tnp_IS1595 19 fvCPhCgsrkayrikt....rglfqCkeCrk 45
                   ++CP+C+s+ +yr  +      +f+C++C++
     EHU01463.1  6 VHCPRCQSALVYRHGQnpkgHDRFRCRDCHR 36
                   67*****99888877789999********97 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   2.9e-06    0.0023       2      28 ..       7      40 ..       6      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.9e-06
                    --SSS-S--EE-S.......SEEE-TTT--EEEE CS
  zinc-ribbons_6  2 kCpeCqqelekrg.......eqyhCeaCqedlkk 28
                    +Cp+Cq++l+ r+       ++++C+ C++ ++ 
      EHU01463.1  7 HCPRCQSALVYRHgqnpkghDRFRCRDCHRVFQL 40
                    8*********666699**999********99886 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0025         2      27      36 ..       6      15 ..       1      19 [. 0.71
   2 !    9.6   0.6    0.0012      0.94       6      16 ..      29      39 ..      28      44 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0025
  Zn-ribbon_8 27 taCPeCgsev 36
                 ++CP+C+s++
   EHU01463.1  6 VHCPRCQSAL 15
                 45*****944 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  6 YrCeeCghefe 16
                 +rC++C+++f 
   EHU01463.1 29 FRCRDCHRVFQ 39
                 9********97 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.9   4.5e-06    0.0035      12      38 ..       6      38 ..       2      39 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.5e-06
                -B-TTT-SB-.....-S.SSS-EEEETTT--EE CS
        C1_1 12 tfCkhCgefl.....wg.kekqglkCswCkllv 38
                 +C  C++ l     +  k++  ++C++C++++
  EHU01463.1  6 VHCPRCQSALvyrhgQNpKGHDRFRCRDCHRVF 38
                68*************666************985 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     8e-06    0.0063       2      18 ..       6      22 ..       5      30 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8e-06
                    EE-SSS--EEEEEE-SS CS
  zf-C4_Topoisom  2 ekCPkCggdLvlkrgkk 18
                    + CP C + Lv+++g +
      EHU01463.1  6 VHCPRCQSALVYRHGQN 22
                    68************976 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.8   1.1e-05    0.0083       6      34 ..       6      36 ..       4      41 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-05
  Zn_ribbon_recom  6 lrCgeCGspmtr.rkrk.gkrhyYrCstyrr 34
                     + C +C+s++++ ++++ ++ +++rC+ ++r
       EHU01463.1  6 VHCPRCQSALVYrHGQNpKGHDRFRCRDCHR 36
                     67*******987356668999*****98765 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   2.6e-05      0.02       4      26 ..       7      35 ..       3      36 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
  PhnA_Zn_Ribbon  4 kCplCaSeytY......edgallvCpeCa 26
                    +Cp C+S  +Y       +++ + C +C+
      EHU01463.1  7 HCPRCQSALVYrhgqnpKGHDRFRCRDCH 35
                    6****************999999999998 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   5.5   6.5e-05     0.051       3      35 ..       6      38 ..       5      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-05
  zinc_ribbon_4  3 itCpsCkakyeiddeklpakgvkvrCskCghvF 35
                   ++Cp+C+++   +  + p+++ + rC  C  vF
     EHU01463.1  6 VHCPRCQSALVYRHGQNPKGHDRFRCRDCHRVF 38
                   89******************************9 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2     4e-05     0.031       4      28 ..       8      35 ..       7      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4e-05
                    ESTTTSBEEEEECSCCCE...EEESSSS CS
  RNA_POL_M_15KD  4 CpkCgNlLlpkedkegkn...feCrqCg 28
                    Cp C + L ++ ++  k    f Cr C 
      EHU01463.1  8 CPRCQSALVYRHGQNPKGhdrFRCRDCH 35
                    *************98877779******7 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.9   3.6e-05     0.028     123     157 ..       5      39 ..       1      44 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
     TackOD1 123 kleCpkCktkLrhiGvDYdrplevykCnsCkslfs 157
                 ++ Cp+C++ L        +    ++C++C+++f+
  EHU01463.1   5 NVHCPRCQSALVYRHGQNPKGHDRFRCRDCHRVFQ 39 
                 689********988888899999*********997 PP

>> VP_N-CPKC  Virion protein N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00016      0.12      19      30 ..       8      20 ..       5      21 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
   VP_N-CPKC 19 CPKC.sALqYRnG 30
                CP+C sAL YR G
  EHU01463.1  8 CPRCqSALVYRHG 20
                ****99*****98 PP

>> TRAF6_Z2  TNF receptor-associated factor 6 zinc finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00055      0.43       4      12 ..       6      14 ..       3      16 .. 0.89
   2 ?    3.3   0.2      0.11        89       6      14 ..      31      39 ..      29      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00055
    TRAF6_Z2  4 VeCPQCQra 12
                V CP CQ a
  EHU01463.1  6 VHCPRCQSA 14
                99*****87 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
    TRAF6_Z2  6 CPQCQraFQ 14
                C  C r FQ
  EHU01463.1 31 CRDCHRVFQ 39
                889*****9 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   9.6e-05     0.075       3      20 ..       6      23 ..       5      25 .. 0.88
   2 ?    3.0   2.9      0.21   1.7e+02      41      47 .]      28      34 ..      27      34 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.6e-05
     zf-ISL3  3 hrCPnCgsktvvkhgkke 20
                 +CP+C+s  v++hg+++
  EHU01463.1  6 VHCPRCQSALVYRHGQNP 23
                58*************865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.21
     zf-ISL3 41 RyrCkeC 47
                R+rC++C
  EHU01463.1 28 RFRCRDC 34
                9****** PP

>> C1_4  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.051        40      23      33 ..       3      13 ..       1      17 [. 0.80
   2 ?   10.5   3.0   0.00072      0.56       1      35 [.       7      38 ..       7      41 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.051
        C1_4 23 ssryrCekCkn 33
                s+ ++C++C++
  EHU01463.1  3 SVNVHCPRCQS 13
                77899999997 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00072
        C1_4  1 eCygCqkkfpklakkkkdeeltssryrCekCkndF 35
                +C  Cq+++   + +   +     r+rC+ C+++F
  EHU01463.1  7 HCPRCQSALVYRHGQ---NPKGHDRFRCRDCHRVF 38
                588899988766655...345789*********99 PP

>> zinc_ribbon_12  Probable zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.2   0.00071      0.55       9      44 ..       8      41 ..       5      42 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00071
  zinc_ribbon_12  9 CsnCfelLqlPkkflllkkkqqklrCGaCsevlsfs 44
                    C  C   L          k + ++rC  C  v++++
      EHU01463.1  8 CPRCQSALVYRHGQNP--KGHDRFRCRDCHRVFQLT 41
                    5555555554433333..6788***********987 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.021        16      27      39 ..       5      17 ..       1      20 [. 0.78
   2 ?    6.4   0.1     0.012       9.3      52      68 ..      28      44 ..      26      45 .] 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.021
   DiS_P_DiS 27 rSrCpkCghklkw 39
                + +Cp+C+++l  
  EHU01463.1  5 NVHCPRCQSALVY 17
                679*****99865 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
   DiS_P_DiS 52 rgrCraCkakislrypl 68
                r rCr C++  +l y  
  EHU01463.1 28 RFRCRDCHRVFQLTYAY 44
                679*****999999976 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.4   0.00029      0.23       2      32 ..       7      38 ..       7      39 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
                B-TTT--B-EEE--.TT-SS-EEEETTTTEEE CS
   Nudix_N_2  2 FCsqCGtpvelrip.dgDnreRlvCpaCgtih 32
                +C+ C +++ +r       + R++C +C+ ++
  EHU01463.1  7 HCPRCQSALVYRHGqNPKGHDRFRCRDCHRVF 38
                7*******99776537899**********996 PP

>> zf-Dof  Dof domain, zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.2   0.00071      0.56       4      37 ..       6      37 ..       3      41 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00071
      zf-Dof  4 lkCprCestntkFcYyNNysl.sqPRyfCkaCrry 37
                ++CprC+s      Y   ++     R+ C+ C+r 
  EHU01463.1  6 VHCPRCQSALV---YRHGQNPkGHDRFRCRDCHRV 37
                79******854...54444331578********96 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1      0.02        15      86      97 ..       5      16 ..       1      26 [. 0.69
   2 ?    5.8   0.1     0.018        14      70      83 ..      28      41 ..      23      44 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.02
                HHS-TTTSSS-E CS
        HypA 86 alrCpkCgsadv 97
                +++Cp+C+sa v
  EHU01463.1  5 NVHCPRCQSALV 16
                457888888644 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.018
                EEEETTTS-EEECH CS
        HypA 70 kvrCreCgkefele 83
                ++rCr+C++ f+l+
  EHU01463.1 28 RFRCRDCHRVFQLT 41
                799*****999865 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.7   0.00087      0.68       1      26 [.       7      35 ..       7      38 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00087
    zf-TFIIB  1 kCPkCqdele...eser.ggveidyCpqCr 26
                +CP+Cq++l+     +   g   ++C +C+
  EHU01463.1  7 HCPRCQSALVyrhG-QNpKGHDRFRCRDCH 35
                7********97642.334666667777775 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0042       3.3      23      31 ..       4      12 ..       1      28 [. 0.79
   2 ?    6.1   1.0    0.0095       7.4       5      14 ..      29      38 ..      25      44 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0042
  Mu-like_Com 23 ltiKCPRCG 31
                 +++ CPRC 
   EHU01463.1  4 VNVHCPRCQ 12
                 6799****5 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0095
  Mu-like_Com  5 lRCGeCaRLL 14
                  RC +C+R+ 
   EHU01463.1 29 FRCRDCHRVF 38
                 7*******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 353.35
//
Query:       EHU01464.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.4  1  DDE_3         DDE superfamily endonuclease
      1e-10   41.1   1.0    3.6e-09   36.2   0.1    3.2  3  HTH_23        Homeodomain-like domain
    5.2e-09   36.6   1.2    3.5e-08   34.0   0.3    2.5  2  HTH_32        Homeodomain-like domain
    1.7e-07   31.1   0.6    6.1e-07   29.4   0.1    2.0  2  HTH_29        Winged helix-turn helix
    4.4e-06   26.2   0.3    4.4e-06   26.2   0.3    3.4  4  HTH_33        Winged helix-turn helix
    1.3e-05   25.2   0.2     0.0002   21.4   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain
      0.056   14.0   0.2       0.11   13.0   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01464.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01464.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01464.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01464.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01464.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.0   0.3   1.5e-11   3.5e-08       2      73 .]      57     136 ..      56     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHU01464.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.5e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r++s e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01464.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWSFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777999887777666645526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   2.7e-10   6.1e-07       1      55 [.      30      82 ..      30      86 .. 0.94
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.7e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01464.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHU01464.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.48   1.1e+03       3      16 ..      81      94 ..      79      98 .. 0.86
   2 !   26.2   0.3     2e-09   4.4e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   3 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   4 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.48
      HTH_33  3 grWtlarlaqliee 16
                 rW+ + +++l++e
  EHU01464.1 81 RRWSFEHICALLRE 94
                79*********997 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01464.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01464.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01464.1 314 SSMWQLLKK 322
                 789999986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   9.1e-08    0.0002       1      52 []      29      81 ..      29      82 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01464.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************97537775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01464.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHU01464.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01464.1 128 HASTIRR 134
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   5.1e-05      0.11      12      60 ..      27      75 ..      18      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.1e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr 60
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl   
    EHU01464.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSL 75
                  666666666777788***********************98888888643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 3156.88
//
Query:       EHU01465.1  [L=60]
Description: InsA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-32  108.4   0.3    1.1e-31  108.2   0.3    1.1  1  HTH_Tnp_IS1   InsA C-terminal domain
  ------ inclusion threshold ------
      0.014   14.8   0.0       0.02   14.3   0.0    1.2  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.06   13.2   0.0      0.062   13.2   0.0    1.1  1  Sigma70_ECF   ECF sigma factor
       0.12   11.3   0.0       0.12   11.3   0.0    1.0  1  TnsD          Tn7-like transposition protein D


Domain annotation for each model (and alignments):
>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.3   2.4e-35   1.1e-31       1      45 [.      12      56 ..      12      57 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 2.4e-35
  HTH_Tnp_IS1  1 ytYeArkPGvkekIvemAfNGaGvraTARtlkvGiNTviRtLKnS 45
                 ytYeArkPGvke+I+emAfNGaGvr+TARtlk+GiNTviRtLKnS
   EHU01465.1 12 YTYEARKPGVKEQITEMAFNGAGVRDTARTLKIGINTVIRTLKNS 56
                 9*******************************************9 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.5e-06      0.02      17      49 ..      22      54 ..      20      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.5e-06
  HTH_Tnp_ISL3 17 eayilelllesrsvkavArqlgvSwtTVwrild 49
                  +++i e++ +++ v++ Ar l ++ +TV+r l+
    EHU01465.1 22 KEQITEMAFNGAGVRDTARTLKIGINTVIRTLK 54
                  689999************************987 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.062     135     173 ..      16      54 ..       4      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
  Sigma70_ECF 135 sldpeqarlvelrkleGlsveEiAeklgvskrtverrla 173
                  + +p   +++  + ++G +v ++A +l+++  tv r l+
   EHU01465.1  16 ARKPGVKEQITEMAFNGAGVRDTARTLKIGINTVIRTLK 54 
                  567889999**************************9986 PP

>> TnsD  Tn7-like transposition protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05      0.12     187     223 ..      21      56 ..       6      60 .] 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.8e-05
        TnsD 187 weerlkeLveeeglslkeiAkelgvdiktVlryakkl 223
                 ++e++ e+   +g  ++++A++l++ i+tV+r +k+ 
  EHU01465.1  21 VKEQITEMAF-NGAGVRDTARTLKIGINTVIRTLKNS 56 
                 6666666666.9999*****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 504.36
//
Query:       EHU01466.1  [L=86]
Description: iso-IS1n family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-44  151.0   0.0    2.5e-44  150.7   0.0    1.0  1  DDE_Tnp_IS1   IS1 transposase
     0.0012   18.4   0.0     0.0013   18.3   0.0    1.0  1  DDE_Tnp_IS66  Transposase IS66 family


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.0   2.8e-48   2.5e-44       1      82 [.       2      82 ..       2      85 .. 0.98

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 2.8e-48
  DDE_Tnp_IS1  1 vlvcaeldeqwsyvgakarqrwlfyaydrkrktvlayvfgertdetlrellallspfdvviltsddwglyerelkkdkhlis 82
                 +l+c eldeqws+vg+karq+wl+yay++k+++vlay+fg+rtdet+rellall+pf+++i+tsddwg+y+re++kdkhl++
   EHU01466.1  2 ALIC-ELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIGIITSDDWGSYGREVPKDKHLTG 82
                 689*.***************************************************************************97 PP

>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.5e-07    0.0013      85     138 ..      16      72 ..       4      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.5e-07
  DDE_Tnp_IS66  85 gkgkksylWvyvtdkrkpavlfeyspsRggevaealLag...fk.GvlvsDgyagYnk 138
                   +k ++++lW ++++k+  + ++++   R+ e+ ++lLa    f+ G++ sD++++Y +
    EHU01466.1  16 SKARQHWLWYAYNTKTGGVLAYTF-GPRTDETCRELLALltpFNiGIITSDDWGSYGR 72 
                   68899********99777777777.56999999999888777889***********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 743.77
//
Query:       EHU01467.1  [L=66]
Description: iso-IS1 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-25   89.4   0.9    2.4e-25   89.4   0.9    1.0  1  DDE_Tnp_IS1  IS1 transposase
  ------ inclusion threshold ------
       0.06   13.2   0.1       0.06   13.2   0.1    1.2  1  Curto_V2     Curtovirus V2 protein


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.9   2.7e-29   2.4e-25      77     131 .]      12      66 .]       3      66 .] 0.95

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 2.7e-29
  DDE_Tnp_IS1  77 dkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvigtylekkmyq 131
                  +k l++ki+tqriernnltlrtr+krl+r++++fs+svelhekvig ++ek m++
   EHU01467.1  12 NKALTGKIFTQRIERNNLTLRTRIKRLTRRTICFSRSVELHEKVIGAFIEKYMFY 66 
                  6889*************************************************97 PP

>> Curto_V2  Curtovirus V2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   6.7e-06      0.06      51      82 ..      29      60 ..       6      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.7e-06
    Curto_V2 51 lqfqkevkkllklkvtfsrkcelyekiykkyl 82
                l ++  +k+l ++ + fsr +el+ek+   ++
  EHU01467.1 29 LTLRTRIKRLTRRTICFSRSVELHEKVIGAFI 60
                678889********************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 583.02
//
Query:       EHU01468.1  [L=341]
Description: resolvase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-27   96.3   1.1    3.4e-27   95.4   1.1    1.5  1  Resolvase  Resolvase, N terminal domain
  ------ inclusion threshold ------
      0.019   15.1   0.6      0.076   13.1   0.0    2.2  2  HTH_7      Helix-turn-helix domain of resolvase
       0.02   14.6   0.1      0.059   13.2   0.1    1.7  1  HTH_23     Homeodomain-like domain
       0.74    9.9   4.8        2.2    8.4   0.1    2.5  2  HTH_3      Helix-turn-helix


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   1.1   7.5e-31   3.4e-27       2     146 .]      23     177 ..      22     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 7.5e-31
                 EEEEEES-----THHHHHHHHHHHH-S--..SE...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC-S....S-HHHHHHHHHTT-EEEE CS
   Resolvase   2 igYaRvSteeqddslerQkealrayakenglkivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRLaRs.vrdlltlleelrekgvslvs 99 
                  +Y+R St+eqd   +r +++l ++a e+++ i + + ++  SGa+leRp+l rll++ r+  gdvl++e++dRL+R    ++ +l   +r++gv +v 
  EHU01468.1  23 RAYLRASTSEQD--AQRARDMLDRFAHEHNVIICNYYAEN-ESGARLERPELFRLLNDSRP--GDVLLIEDVDRLSRLkGDEWEKLKAIIRQRGVWVVA 116
                 58**********..***************88899999999.********************..***************9999***************** PP

                 SS..............SS-.---H.HHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHC CS
   Resolvase 100 ldeg............idt.stpm.grlllqilaalaeferelirertkeglaaakakGkk 146
                 ++ +            +d  + ++ + +ll++laa+a+ + e++rer+++g+ +aka+Gk+
  EHU01468.1 117 VNVPttwqhlspraneFDSrMFAAiNDMLLDMLAAIARRDYEQRRERQQQGITKAKAAGKY 177
                 **75467666554444222333334667*******************************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.54   2.4e+03      10      26 ..     156     172 ..     151     177 .. 0.79
   2 ?   13.1   0.0   1.7e-05     0.076       5      38 ..     181     214 ..     178     214 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.54
                 HHGGGGSSTTTT--STT CS
       HTH_7  10 dinrvvkLleeGisisk 26 
                 d+++ +++ ++Gi+++k
  EHU01468.1 156 DYEQRRERQQQGITKAK 172
                 78888999999*99887 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.7e-05
                 SS-HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   5 klskndinrvvkLleeGisiskIAkevnisRsTv 38 
                  ++k +++ + +Ll +G+s +++ k  ++sRsT+
  EHU01468.1 181 QVNKPRYDAINRLLLSGSSWTQVQKTIGCSRSTI 214
                 5677799**************************7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05     0.059      12      39 ..     192     219 ..     186     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
      HTH_23  12 lllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +ll+ G s++++ +  g+sr+T++  +k
  EHU01468.1 192 RLLLSGSSWTQVQKTIGCSRSTISSAIK 219
                 46667******************98776 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.5      0.05   2.2e+02       2      16 ..     160     174 ..     159     181 .. 0.82
   2 ?    8.4   0.1   0.00049       2.2       8      28 ..     196     216 ..     191     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
                 HHHHHHTTHHHHHHH CS
       HTH_3   2 kelRkqlglsqeeLA 16 
                 ++ R+q+g++++++A
  EHU01468.1 160 RRERQQQGITKAKAA 174
                 67899******6665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00049
                 TTHHHHHHHHHHTSSHHHHHH CS
       HTH_3   8 lglsqeeLAeklGvsrstisr 28 
                  g s +++++ +G srstis 
  EHU01468.1 196 SGSSWTQVQKTIGCSRSTISS 216
                 5668889************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 3029.54
//
Query:       EHU01469.1  [L=58]
Description: hypothetical protein CKS_3899 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 453.29
//
Query:       EHU01470.1  [L=264]
Description: ParA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-39  133.9   0.1    8.3e-39  133.3   0.1    1.2  1  AAA_31       AAA domain
    6.7e-15   55.3   0.1    8.8e-15   54.9   0.1    1.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    4.9e-07   29.3   0.7    0.00013   21.3   0.1    2.5  2  MipZ         ATPase MipZ
      1e-06   28.5   0.0    2.6e-06   27.1   0.0    1.6  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
      3e-06   26.6   0.3    7.6e-06   25.3   0.3    1.8  1  ArsA_ATPase  Anion-transporting ATPase
     0.0001   21.8   1.2     0.0015   18.0   0.0    2.2  2  ParA         NUBPL iron-transfer P-loop NTPase
     0.0015   17.9   0.5      0.017   14.4   0.1    2.1  2  VirC1        VirC1 protein


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.1   3.3e-42   8.3e-39       3     170 ..       6     177 ..       5     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 3.3e-42
      AAA_31   3 vIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevl....ieeknikeaii.....ktkvenldlipssidLae 92 
                 +I++an KGGv+KTT+++++++ala +g+++LlvDlD Q+n++  +g  + + + t+++++    +   +++++++     +  + nld+ip++i La 
  EHU01470.1   6 IISFANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQGNLSDDVG--RGDEDYTITDLFedpkF---DTNKLVYtaldgEVAIPNLDVIPADITLAV 99 
                 8*******************************************999..57777899999744332...4444443222324458999*********** PP

      AAA_31  93 aeielvelekkeeilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkk 170
                    +  +++++ +il+e l ++k eYDyi+iD  P+++l  enaL++ + +++pv+++ +a++G+++l++ ++evk++
  EHU01470.1 100 EARSAERFRHRLNILEEGLARLKTEYDYILIDLRPAIDLSIENALLITNNIVVPVDMDRRAVKGIADLFQVVREVKRN 177
                 ***************************************************************************996 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1   3.4e-18   8.8e-15       1     123 [.       7     227 ..       7     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 3.4e-18
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i++a+ kGGv KTt +++ ++ala +g+r+llvD+D q+n++   +  ++d++                                              
  EHU01470.1   7 ISFANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQGNLSD--DVGRGDEDYtitdlfedpkfdtnklvytaldgevaipnldvipaditlavears 103
                 6799*************************************99..555555555889****************************************** PP

                 ........................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHH CS
                 ........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ........................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkeal 97 
                                                                          +k +  l+++++++k+++  +  +v ++v+ +  + ++k+++
  EHU01470.1 104 aerfrhrlnileeglarlkteydyilidlrpaidlsienallitnnivvpvdmdrrAVKGIADLFQVVREVKRNNDFVYTLVKTKVNVS--HSKMKKSI 200
                 ********************************************************888888899999998888899999*******99..999***** PP

                 HHHHHHCTS-EEE.EEE--CCHCCCCH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        CbiA  98 eelkqrygvpvlg.viprdeavaeapa 123
                 + ++ + g +v + +i+++e + +a  
  EHU01470.1 201 DGYISESGYKVAKtEIRQSELFKQATD 227
                 ***9999****9999999998876655 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   5.2e-08   0.00013       1      40 [.       5      44 ..       5      50 .. 0.94
   2 !    5.9   0.1    0.0027       6.8      84     130 ..     109     155 ..      78     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.2e-08
                EEEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TT CS
        MipZ  1 hvivlgnekGGsGksttavhvavaLlkkGarvaaidldlr 40
                ++i ++n kGG  k+t ++ v  aL+++G r   +dld++
  EHU01470.1  5 YIISFANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQ 44
                5899**********************************86 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEE CS
        MipZ  84 aevaeleelvadleaeldfividtPGsdsalsrlahsladtlvtPln 130
                 ++ + lee +a+l++e+d+i+id     +  +  a    + +v P++
  EHU01470.1 109 HRLNILEEGLARLKTEYDYILIDLRPAIDLSIENALLITNNIVVPVD 155
                 344568889999999*******9866666677778888888888875 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     1e-09   2.6e-06       5     143 ..       8     152 ..       5     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1e-09
    CBP_BcsQ   5 alqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhF...nvdieqregwaraeldgapwrqaale...yapgldllPfGelnveekenlqq 97 
                  +   +GGv +t+   a + al + g++ l++Dl  +  L       ++d++ ++ +   ++d++++  +al+    +p+ld++P   + + e+ + + 
  EHU01470.1   8 SFANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQGNLSDDVgrgDEDYTITDLFEDPKFDTNKLVYTALDgevAIPNLDVIPADITLAVEARSAER 106
                 566668****************************999888765522256777778888889999998888886444579*******999999999999* PP

    CBP_BcsQ  98 laekaeallaalkelkeqyrwillDlpagasaltrellaladlvll 143
                 ++++ + l + l++lk++y++il+Dl    +   +++l  ++  + 
  EHU01470.1 107 FRHRLNILEEGLARLKTEYDYILIDLRPAIDLSIENALLITNNIVV 152
                 **************************88777666666655555443 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.3     3e-09   7.6e-06       6      49 ..      10      53 ..       6     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3e-09
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS CS
  ArsA_ATPase  6 vgGKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdq 49
                    KGGV Ktt+  a+++ l+  g+++ll+ +D   +lsD   +
   EHU01470.1 10 ANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQGNLSDDVGR 53
                 567*************************************7765 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.9e-07    0.0015       5      44 ..       6      45 ..       3      67 .. 0.92
   2 ?    2.2   0.3     0.041   1.1e+02     111     145 ..     124     155 ..     113     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.9e-07
        ParA  5 viavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyG 44
                +i  + +KGGV K+t  + + +aLa+ g+++ l+D+D  G
  EHU01470.1  6 IISFANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQG 45
                6778899******************************888 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.041
        ParA 111 elDyLiiDlPPGtgDeqltvaqklplagaviVttp 145
                 e Dy++iDl P    + l++ + l +++ ++V   
  EHU01470.1 124 EYDYILIDLRPA---IDLSIENALLITNNIVVPVD 155
                 679*******97...68999999999999888543 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   6.6e-06     0.017       3      43 ..       6      46 ..       5      52 .. 0.90
   2 ?    1.4   0.0     0.064   1.6e+02      70     135 ..     112     176 ..     104     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.6e-06
       VirC1  3 litfcslkGGaGkttalmglcsalasdgkrvalfeadenrP 43
                +i+f+  kGG  ktt+ +++ +ala+ g r  l + d+   
  EHU01470.1  6 IISFANSKGGVAKTTSCIAVGCALAAAGYRTLLVDLDHQGN 46
                6899***************************9999997655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.064
       VirC1  70 plleaayeeaegeGfdyaladtrgGss.elnntiiassdllliPtmltpldidealatyryvielll 135
                  +le+   + ++  +dy l+d r      ++n+++ + + +++P  + +  +    + +++v e+  
  EHU01470.1 112 NILEEGLARLKT-EYDYILIDLRPAIDlSIENALLIT-NNIVVPVDMDRRAVKGIADLFQVVREVKR 176
                 566666666655.499999998876431344444443.55788988888888888888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2082.67
//
Query:       EHU01471.1  [L=511]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-98  327.9   6.0    3.5e-97  325.2   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    7.5e-18   64.5   0.1    3.1e-17   62.5   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.3e-14   53.0   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
      1e-10   42.2   8.3    2.2e-10   41.1   8.3    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0075   14.9   5.3      0.012   14.2   5.3    1.3  1  FUSC             Fusaric acid resistance protein family
  ------ inclusion threshold ------
      0.028   14.0   2.4      0.032   13.8   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.062   12.5   1.8       0.12   11.5   1.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.069   13.5   4.5        0.9    9.9   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.095   13.1   0.4         11    6.5   0.1    2.7  2  PRA-PH           Phosphoribosyl-ATP pyrophosphohydrolase
       0.14   11.3   0.7       0.23   10.6   0.7    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.21   11.7  10.7       0.36   10.9  10.7    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.21   10.8   4.1       0.22   10.8   3.1    1.4  2  MIS13            Mis12-Mtw1 protein family
       0.35   11.3   3.7       0.79   10.1   3.7    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.41   11.0   4.5        0.6   10.5   2.0    2.5  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.2   3.3       0.75    9.5   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.52   10.5   2.3       0.95    9.6   0.2    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.69    9.7  12.2        1.1    9.0  12.2    1.2  1  ERM              Ezrin/radixin/moesin family
        2.5    7.3   3.9        3.8    6.7   3.9    1.2  1  TMPIT            TMPIT-like protein
        5.4    7.4   8.3         12    6.3   8.3    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        6.8    6.2   8.7         17    4.8   8.7    1.6  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.6    7.2   9.0         12    6.6   1.7    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   3.2     0.047        40     159     231 ..      28     101 ..      22     111 .. 0.63
   2 !  325.2   0.0  4.2e-100   3.5e-97       2     281 ..     175     460 ..     174     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
  DDE_Tnp_IS66 159 daeeakkksqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkvlpksklgkai 231
                   +       sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++vl++s ++k +
    EHU01471.1  28 EYNRLL--SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEVLRQSSARKPL 101
                   444432..57777777778888888888874344444455555555556666666666.666669999999888865 PP

  == domain 2  score: 325.2 bits;  conditional E-value: 4.2e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01471.1 175 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 271
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01471.1 272 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 367
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01471.1 368 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 460
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   3.6e-20   3.1e-17       1      39 []     467     504 ..     467     504 .. 0.99

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 3.6e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL +++d +p+++l++LLPW
      EHU01471.1 467 SLIGTCRLNGVEPEAWLRYVLGHIQD-WPVNRLRDLLPW 504
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   1.5   3.9e-17   3.3e-14       1      46 []     116     160 ..     116     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 3.9e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01471.1 116 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 160
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   8.3   2.6e-13   2.2e-10       1      68 [.      46     109 ..      46     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.6e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE.ltardpeQleLaleeleaeeaeveakapkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE l+++++ Q   a+e ++a ++e ++       r++  RkpLpa+LPRe+
   EHU01471.1  46 RLKALVAKLQRMQFGKSSEkLREKTARQVREAEERISALQEEMAEV-----LRQSSARKPLPASLPRET 109
                  79*****************966777777777777666666666666.....8899************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   5.3   1.4e-05     0.012     213     296 ..       4      94 ..       1     124 [. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale...ad 296
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +    +
  EHU01471.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevlRQ 94 
                 448899**********************************999**********99999666777777777777777777777776644433 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.9   3.8e-05     0.032     144     230 ..      10     110 ..       3     178 .. 0.62
   2 ?   -1.2   0.0       1.4   1.2e+03     125     146 ..     339     372 ..     330     434 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk......... 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l++ +         
    EHU01471.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLRQSSarkplpasl 105
                   334444455555555566666677789999999999888866554399999*************************99844.333333222333333 PP

  Exonuc_VII_L 230 ....e 230
                        
    EHU01471.1 106 pretL 110
                   33330 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01471.1 339 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 372
                   6788888888888887666664444444444432 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.8   0.00014      0.12      47     106 ..      34      90 ..      25      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01471.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2     0.001       0.9      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    4.4   0.9     0.055        47      33      58 ..      71      96 ..      68     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU01471.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.055
      Csm1_N 33 sqkletkdqeiesLkeqlaeleekvk 58
                +++++  +++i++L+e++ae+  +++
  EHU01471.1 71 ARQVREAEERISALQEEMAEVLRQSS 96
                5789999************9988876 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.013        11      18      45 ..      71      98 ..      51     143 .. 0.76
   2 ?    3.9   0.0     0.086        74      57      77 ..     464     484 ..     455     487 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
                ---HHHHHHHHHHHHHHHHHHHHHT-SC CS
      PRA-PH 18 astaelaslraaligEEavElleaaseg 45
                a + ++a +r  +++EE++E+l ++s+ 
  EHU01471.1 71 ARQVREAEERISALQEEMAEVLRQSSAR 98
                223445555**************99865 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.086
                 HHHHHHHHHHHCT--CHHHHH CS
      PRA-PH  57 llYvtygllvllGidldavfe 77 
                 +lY ++g++ l+G++++a ++
  EHU01471.1 464 VLYSLIGTCRLNGVEPEAWLR 484
                 79***************9776 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00028      0.23      24      79 ..      37      94 ..      32     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqieh 79
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  ++
  EHU01471.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVLRQ 94
                578***************6555323335666777788888999*********997665 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  10.7   0.00042      0.36      37     115 ..      11      91 ..       5      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01471.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************986 PP

>> MIS13  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.1   0.00025      0.22     206     296 ..       8      96 ..       2     105 .. 0.88
   2 ?   -3.7   0.0       6.8   5.8e+03     213     256 ..     365     408 ..     347     412 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
                 T-----------S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.CTSTTTSSXXXXXXXXXXXXX..XXXXXXXXX CS
       MIS13 206 seakidsdtqepdtaqrilsdnanveskletkvDeLqdsvhkLdsaskalnelstqklq.klsrllakrskkekkssesrkkstkkLlrgls 296
                 ++a++++ +qe++t+     + a+ +  l+++v + + ++++L++ +  l++++  k   kl+  +a+++++ ++ +++ +    ++lr++s
  EHU01471.1   8 ENARLRALLQEQQTT---IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSSeKLREKTARQVREAEERISALQEEMAEVLRQSS 96 
                 458899999999999...89999**********************99999998877665699*********999999999999*******99 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.8
                 -----S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       MIS13 213 dtqepdtaqrilsdnanveskletkvDeLqdsvhkLdsaskaln 256
                 +   +++++r+  ++++    ++   D +q +++ L+ +s +++
  EHU01471.1 365 EIRGSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAK 408
                 44555555666677788888888888888888888888888776 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.7   0.00092      0.79      32     106 ..      21      94 ..       4      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00092
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskallee 106
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l++
  EHU01471.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVLRQ 94 
                 5688999***********************9999877..6667778888899999999999*******99988876 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.0    0.0007       0.6       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.1e+03       5      18 ..     350     363 ..     344     367 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0007
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU01471.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU01471.1 350 TEALKRIGKLYAIE 363
                 58899999988877 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00088      0.75     152     193 ..      17      58 ..       4      66 .. 0.87
   2 ?    1.5   0.3      0.25   2.1e+02      98     129 ..      64      95 ..      61     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00088
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU01471.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.25
         LXG  98 dfLeqelenglkkakevteelkdeinkilasv 129
                 ++L++  ++++ +a+e +++l++e+ ++l++ 
  EHU01471.1  64 EKLREKTARQVREAEERISALQEEMAEVLRQS 95 
                 67778888899999999999999999988765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2    0.0011      0.95      23      36 ..     113     126 ..     106     129 .. 0.80
   2 ?   -0.5   0.2       1.6   1.4e+03       7      14 ..     155     162 ..     142     171 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  23 dapltaCPeCgsev 36 
                   +++t+CP+Cg+e+
   EHU01471.1 113 SPAETTCPACGGEL 126
                  467899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01471.1 155 ACCSCDHI 162
                  35555554 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  12.2    0.0013       1.1      17     100 ..       5      90 ..       3     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01471.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9876 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.9    0.0045       3.8      13      90 ..      14      93 ..       7     101 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0045
       TMPIT 13 eleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllp 90
                +l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l 
  EHU01471.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLR 93
                55566668888889999999999999999999999999999999877442233444445555544444444456666554 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.3     0.013        12      10      86 ..      15      95 ..      11     103 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.013
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a++++  + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l++ 
  EHU01471.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLRQS 95
                6777777778889999999999999999999999999999966555.23466666666668888888888554444555554 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.7      0.02        17      71     151 ..      14      96 ..       2     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.02
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlt 151
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL q +
    EHU01471.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLRQSS 96 
                   55566666666666666666667777888889999999998877644677888899***********************9865 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.7     0.014        12      22      53 ..      12      43 ..       8      59 .. 0.87
   2 ?    2.6   2.0      0.25   2.2e+02      35      55 ..      69      89 ..      43     108 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01471.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHT-XXXXXXXX CS
        SlyX 35 rlqrqlrllaerlkeleessg 55
                +  rq+r+ +er+++l+e+++
  EHU01471.1 69 KTARQVREAEERISALQEEMA 89
                444555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1528  (0.0852251); expected 358.6 (0.02)
Passed bias filter:                     1045  (0.0582855); expected 358.6 (0.02)
Passed Vit filter:                       155  (0.00864521); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 3600.70
//
Query:       EHU01472.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01472.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 941.33
//
Query:       EHU01473.1  [L=55]
Description: ISSfl3 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 504.50
//
Query:       EHU01474.1  [L=300]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-17   61.7   0.0    7.5e-17   60.7   0.0    1.5  1  HTH_33    Winged helix-turn helix
    1.7e-09   37.6   0.0    4.9e-09   36.1   0.0    1.8  2  DDE_3     DDE superfamily endonuclease
    5.4e-06   26.3   0.1    1.4e-05   25.0   0.1    1.8  1  HTH_29    Winged helix-turn helix
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.054   13.3   0.0    1.7  1  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   1.7e-20   7.5e-17       5      58 ..      97     150 ..      93     152 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.7e-20
      HTH_33   5 WtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpeaqeafkk 58 
                  t++++  l+ee +g++y+v g++++L+r  fsy+kP+ +++k+++eaq+af +
  EHU01474.1  97 PTTQAIIVLVEEWWGITYTVPGMNKWLHRNDFSYKKPAGVPHKFSAEAQQAFMA 150
                 699*************************************************86 PP

>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.63   2.8e+03      59      59 ..      79      79 ..      25     113 .. 0.59
   2 !   36.1   0.0   1.1e-12   4.9e-09       2      68 ..     164     231 ..     163     234 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.63
       DDE_3 59 l 59
                l
  EHU01474.1 79 L 79
                1 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 1.1e-12
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekg.glafvtfeetlnaedfaefl 68 
                 ++fiD ++ ++gt  +++w++kG++ ++e++g+r+r+nl+gal+ ++ g  ++ +++t+n+e++a++l
  EHU01474.1 164 ILFIDGVHPTQGTKLAYGWMPKGRKTVVETSGSRTRLNLMGALNLNDiGNTVIREYDTINSENIARLL 231
                 89*********************************************55666***********99876 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   3.1e-09   1.4e-05       1      61 [.      28      83 ..      28      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.1e-09
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlseeq 61
                R +++ll++eG+s +++iA+  +++++ v+r+l+++ + +  +l++  ++g  ++ lse+q
  EHU01474.1 28 RVRCVLLSSEGWS-TAMIAQSQRIHETIVQRHLNDWLNNE--KLKP-ENGGSQSH-LSEAQ 83
                889*********8.***********************999..7998.44588888.99998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.054       4      42 ..      25      63 ..      22      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
      HTH_23  4 ereRlrillllaeGlsvreIAreLgvsrrTvyrwlkryr 42
                 r+R r +ll  eG+s++ IA+   +++  v+r l+ + 
  EHU01474.1 25 IRDRVRCVLLSSEGWSTAMIAQSQRIHETIVQRHLNDWL 63
                58999****************************999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2668.59
//
Query:       EHU01475.1  [L=284]
Description: IS911 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-30  105.2   0.1    3.4e-30  104.7   0.1    1.3  1  rve            Integrase core domain
      5e-09   35.8   0.1      9e-09   35.0   0.1    1.4  1  rve_3          Integrase core domain
    1.2e-08   35.2   0.0    1.8e-08   34.7   0.0    1.2  1  DDE_Tnp_IS240  DDE domain
    0.00034   20.7   0.0    0.00085   19.4   0.0    1.6  1  HTH_21         HTH-like domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.026   14.7   0.0    1.6  1  rve_2          Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.1   9.5e-34   3.4e-30       2     119 .]     129     244 ..     128     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 9.5e-34
         rve   2 trpgelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 t+p ++w +Dvt+++  +g+++ayl+vv+d f r  +++als + d+++++++l++a + +g     +++sD+gs+yts+++r++l +++ ++s++r+g
  EHU01475.1 129 TEPDQVWFCDVTYIW--TGKRWAYLAVVLDLFARKPVGWALSYSPDSDLTIKALQMAWELRGRPSGVMFHSDQGSHYTSRKYRQMLWRYRLSQSMSRRG 225
                 78*************..9999******************************************99********************************** PP

         rve 101 rpqdnGkvErfhrtlkdei 119
                 +++dn  +Erf+r lk e+
  EHU01475.1 226 NCWDNSPMERFFRSLKSEW 244
                 ****************998 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   2.5e-12     9e-09       3      59 ..     217     274 ..     215     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 2.5e-12
       rve_3   3 ielsyiapgkPqqNglvEsfngtlrdellneelfrslaearekleawre.dYNteRPH 59 
                 + +s++++g +++N  +E+f+++l+ e++  + ++s+ ear+ + ++++ +Y   RPH
  EHU01475.1 217 LSQSMSRRGNCWDNSPMERFFRSLKSEWIPTTGYESFGEARSSIIRYITgYYSALRPH 274
                 6789**************************************9999986478999*** PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0     5e-12   1.8e-08       2     139 ..     133     274 ..     132     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 5e-12
  DDE_Tnp_IS240   2 kswrvDETyvkikGkwaYlyravDkegr.ildflvskrRdtkaakaflrkalkkek.lepeeivtDkasayas.alkelkregelfdevshvqvky 94 
                    ++w  D Ty+    +waYl  ++D   r  +++++s   d + ++++l++a +    ++ + +  D  s y s   +++ +  +l +++s++   +
     EHU01475.1 133 QVWFCDVTYIWTGKRWAYLAVVLDLFARkPVGWALSYSPDSDLTIKALQMAWELRGrPSGVMFHSDQGSHYTSrKYRQMLWRYRLSQSMSRRGNCW 228
                    58**************************9***********************9887688899999*99999862689999999************* PP

  DDE_Tnp_IS240  95 lnnriEsdhrtlKkrlrptrgfkslksaaktl.agfeavknlrkgh 139
                     n  +E+ +r lK +  pt g +s+ +a++ + + +  ++   ++h
     EHU01475.1 229 DNSPMERFFRSLKSEWIPTTGYESFGEARSSIiRYITGYYSALRPH 274
                    ***************************9976515556667666666 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.4e-07   0.00085       7      54 ..      54     100 ..      47     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.4e-07
      HTH_21   7 lalireifeeskgrYGyrriwaeLrreggvrvnhkrVrRlMrelGLrg 54 
                 + l+ e++++s g  G+r+i+ +   + gv++++    RlM+el + +
  EHU01475.1  54 RSLVSEVWNASGGSAGARSIATMVTTK-GVKLGRWLAGRLMKELSISS 100
                 5679***********************.789************99844 PP

>> rve_2  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   7.3e-06     0.026       1      34 [.     234     267 ..     234     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.3e-06
       rve_2   1 EsfFgsLKtElvygetfktleeleaaiedYIewY 34 
                 E fF sLK+E + +  ++++ e+++ i  YI  Y
  EHU01475.1 234 ERFFRSLKSEWIPTTGYESFGEARSSIIRYITGY 267
                 78*****************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 2102.81
//
Query:       EHU01476.1  [L=170]
Description: hypothetical protein CKS_3906 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1507.51
//
Query:       EHU01477.1  [L=313]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-40  139.8   0.4    1.4e-40  139.3   0.4    1.1  1  Y2_Tnp    Putative transposase


Domain annotation for each model (and alignments):
>> Y2_Tnp  Putative transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.4   7.6e-45   1.4e-40       1     178 [.      55     236 ..      55     240 .. 0.94

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 7.6e-45
      Y2_Tnp   1 GavavlhtfgsalnlhpHvHvlvpdGgleedgewkaskksfflpvkalsrlfrgklletlrkavaraklk..rgllerdeefssllkkaskk.....gf 92 
                 G++++lht+g++ln++ H+H+  + Ggl+++g+wk+    + +    +++++ +++++ l +a+++  l   ++++++++e+++l   + k+      +
  EHU01477.1  55 GIFGALHTYGRQLNWNCHLHLSWTTGGLNTHGDWKK----MSFALPKVRERWIWNVRQFLLSAWESLSLPpaLAHIRDYDEWRRLILGLGKNaqgedYW 149
                 89*********************************9....8899999**********************99999**********9887766555566** PP

      Y2_Tnp  93 vvhakkavekerkvleyLarYisrpaisnkRlvstd.eekvtfrlkdkrrkktktvtlepeefirrllahVppkgfkriRyyGvlar 178
                 +v++ k+++++r++ +yL+rY+++p+++  Rl+++d + ++++r+ d+r++++ t++l+++e+i rl++h+p+k+f++iRy+G+la+
  EHU01477.1 150 HVYFAKPTKNARQTAKYLGRYLKKPPVAGARLAHYDgGSRISLRFLDHRTGHYGTLELSQREMILRLIQHIPEKHFRMIRYFGFLAN 236
                 ************************************5568*********************************************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2551.35
//
Query:       EHU01478.1  [L=73]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-17   62.5   0.1    4.4e-17   62.0   0.1    1.3  1  DDE_Tnp_IS66_C  IS66 C-terminal element


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.1   2.4e-21   4.4e-17       1      39 []      29      66 ..      29      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.4e-21
  DDE_Tnp_IS66_C  1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39
                    SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01478.1 29 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 66
                    9************************9.************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 708.31
//
Query:       EHU01479.1  [L=313]
Description: hypothetical protein CKS_3909 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-86  287.4   0.0    7.8e-86  286.9   0.0    1.2  1  Transposase_31   Putative transposase, YhgA-like
     0.0053   16.4   4.1     0.0098   15.6   4.1    1.4  1  Yae1_N           Essential protein Yae1, N terminal
  ------ inclusion threshold ------
      0.026   14.2   0.0        1.2    8.8   0.0    2.2  2  Glyco_trans_4_3  Glycosyl transferase family 4 group
       0.16   12.3   2.0       0.95    9.8   0.2    2.5  2  DUF2267          Uncharacterized conserved protein (DUF2267)


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.9   0.0   1.7e-89   7.8e-86       1     202 [.       9     209 ..       9     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 286.9 bits;  conditional E-value: 1.7e-89
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDa f+++l++pe ardf++ hlp+el++++dl+tlklesgsf+e++lr+++sD+L+s++t++g +gyi+vl+Eh+s+pdk+mafrL+rYava
      EHU01479.1   9 TPHDATFRQFLTQPEVARDFMDLHLPAELRNICDLSTLKLESGSFVEDDLRQYFSDVLYSLRTTAG-DGYIHVLVEHQSTPDKHMAFRLIRYAVA 102
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+a++k+ lplvip++fY G+++ +p+s+++ld+fddp+la +ly+s+f+LvD+t++pddei  +r++a+l+l+qkhi+qrdlael+++l
      EHU01479.1 103 AMQRHLEAGHKK-LPLVIPVLFYTGKRSpYPYSTRWLDEFDDPALAGKLYSSAFPLVDVTVIPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRL 196
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeq 202
                     + +l +++ +++q
      EHU01479.1 197 APILLAGYLSSSQ 209
                     *999999887776 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   4.1   2.2e-06    0.0098       5      25 ..     259     279 ..     255     281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.2e-06
      Yae1_N   5 GiaeGkeqglqeGfdeGyqeG 25 
                 Gi++G++ g qeG++eG  eG
  EHU01479.1 259 GIQQGIQLGRQEGRNEGKLEG 279
                 99***************9988 PP

>> Glyco_trans_4_3  Glycosyl transferase family 4 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.015        65      17      82 ..     115     181 ..      98     187 .. 0.76
   2 ?    8.8   0.0   0.00026       1.2      19      65 ..     210     257 ..     202     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.015
  Glyco_trans_4_3  17 lp.gVrvlrykpereatpeahpyvreleaavlrgeavaraaeeLkkeGfvP.DvivaHsgwGetlflk 82 
                      lp  + vl y+ +r++ p  + +++e++  +l g+   +a   L +  + P D i +H ++ + + l+
       EHU01479.1 115 LPlVIPVLFYTGKRSPYPYSTRWLDEFDDPALAGKLYSSAF-PLVDVTVIPdDEIAGHRSMAALTLLQ 181
                      665678999***********************998665555.56666555626899999999887776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00026
  Glyco_trans_4_3  19 gVrvlrykpereatpeahpyvreleaav.lrgeavaraaeeLkkeGfv 65 
                       ++++ y ++++ t++a+ +vrel ++v ++g a++++a++L+k+G++
       EHU01479.1 210 VISLVHYIVQAGETSDAEAFVRELAQRVpQHGDALMTIAQQLEKKGIE 257
                      57889999******************99678**************985 PP

>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.071   3.2e+02      13     106 ..      86     111 ..      13     115 .. 0.66
   2 ?    9.8   0.2   0.00021      0.95      15      85 ..     164     240 ..     159     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.071
                 T---HHHHHHHHHHHHHHHHTTS-HHHHHHHHTTS-HHHHHHHHTT--TTS-----SHHHHHHHHHHTS.....EHHHHHHHHHHHHHHHS-HH CS
     DUF2267  13 gledreeAeratravLrtLrdrlteeeaadlaaqLPeelrgllrdgwppvepgkrfdreeflervaeelgvdpedaeqaaraVfaalkealseg 106
                  ++d++                                                                     a +++r  +aa++++l++g
  EHU01479.1  86 STPDKHM--------------------------------------------------------------------AFRLIRYAVAAMQRHLEAG 111
                 2344444....................................................................4455555555555555444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00021
                 --HHHHHHHHHHHHHHHHTTS-HHHHHHHHTTS.-HHHHHHHHTT--TTS......-----SHHHHHHHHHHTS.... CS
     DUF2267  15 edreeAeratravLrtLrdrlteeeaadlaaqL.Peelrgllrdgwppve......pgkrfdreeflervaeelgvdp 85 
                 +d e A +   a L+ L++++ + + a+l + L P +l+g+l   + ++        g+  d+e+f++++a++  ++ 
  EHU01479.1 164 PDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLaPILLAGYLSSSQVISLvhyivqAGETSDAEAFVRELAQRV-PQH 240
                 6777888888999*****************************9998776699***8888*************99.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2439.44
//
Query:       EHU01480.1  [L=202]
Description: hypothetical protein CKS_3910 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   73.5   0.0    2.4e-20   73.1   0.0    1.0  1  DUF2913   Protein of unknown function (DUF2913)


Domain annotation for each model (and alignments):
>> DUF2913  Protein of unknown function (DUF2913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.4e-24   2.4e-20       9     168 ..      10     170 ..       7     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.4e-24
     DUF2913   9 lvnaaLaeLeashksgklvktpaaenhfLvkWltkaLKskrfdklvakdLkrwqkqgrskGknaqLkalleriseqykevaeeekeldskleallaele 107
                 l+  aL +L+  +++g+   +pa+en fL +Wl++aLK++rf++ va d++ ++kqgr +G +a+L ++l+++ +       e+++l  +l   l++ +
  EHU01480.1  10 LAWCALVALALARQNGDV-LSPAQENLFLTRWLATALKQRRFSRDVAPDIEWLLKQGRQLGVSAKLASKLNYLWRSCTGELSEQNDL-FRLTYALETAK 106
                 566799999977777766.89****************************************************99998888999999.99********* PP

     DUF2913 108 ekew..vvitdeevvdklkld.sdgqeslvvcakqleqhfdeegelikpislyvrgdeaefvel 168
                  + w   +++d e + +  l+ + g + ++++ ++l+ +fd++g ++ p++  + g+ a +++l
  EHU01480.1 107 DMSWnyRLLSDREWSGRYALAlNAGVNGIYLSRTNLDVAFDDNGRQTNPLTARLTGNVAGVMKL 170
                 ****9888899999987655427899**************************999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1602.64
//
Query:       EHU01481.1  [L=63]
Description: hypothetical protein CKS_3911 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 513.12
//
Query:       EHU01482.1  [L=56]
Description: hypothetical protein CKS_3819 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.2    8.7   6.1        1.2    8.8   6.1    1.1  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.1   6.4e-05       1.2       6      43 ..       4      41 ..       1      54 [. 0.58

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 6.4e-05
     DUF4131  6 alvllalllllllllllllrrrprrrvlllllllllla 43
                 l+ll+lllllllllll+++r  ++  + + ++++ ++
  EHU01482.1  4 TLLLLLLLLLLLLLLLLQSNRPFTPLSFYSGTMIAKCF 41
                55666666666666666655544444455555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 538.85
//
Query:       EHU01483.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01483.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01483.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01483.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01483.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 958.56
//
Query:       EHU01484.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHU01484.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 872.16
//
Query:       EHU01485.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-98  327.2   4.0    3.2e-97  325.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.1   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.4   0.0  3.9e-100   3.2e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU01485.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.4 bits;  conditional E-value: 3.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01485.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01485.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01485.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01485.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01485.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01485.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01485.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01485.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01485.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01485.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU01485.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01485.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01485.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01485.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01485.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01485.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01485.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01485.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01485.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01485.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01485.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01485.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01485.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01485.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01485.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01485.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01485.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01485.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01485.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01485.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01485.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01485.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1459  (0.0813765); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.72u 0.23s 00:00:00.95 Elapsed: 00:00:00.38
# Mc/sec: 4102.57
//
Query:       EHU01486.1  [L=507]
Description: apolipoprotein N-acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-34  119.9   0.0    1.6e-34  119.4   0.0    1.2  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   9.1e-39   1.6e-34       2     252 ..     224     474 ..     223     482 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 9.1e-39
                   EEEEEBB-...STTHHHHHHHHHHHHHHH..HHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEE CS
  CN_hydrolase   2 vAvvQlpq...kaadleanlqklleliae..AarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklq 93 
                   vA+vQ  +    ++d +++l +l  + +   +   +a +i++PE +it  + e +          ++l+ l a +r  g a+v+g+  ++l++++++
    EHU01486.1 224 VALVQGDIpqsMKWDPQQLLNTLRIYNDLsqPLMGKAPIIIWPESAIT--DLESNQQ--------PFLRSLDAELRARGSALVTGIVDSRLEQNRYH 310
                   8****888889779999999999888766335556*************..5555544........89**********************99****** PP

                   EEEEEEEEETTSEE....EEEEE-SS--E.ECTTSCECCGHHTSCS.........-SS.S-EEEETTE..EEEEEEGGGGGSHHHHHHHHHTT-SEE CS
  CN_hydrolase  94 ayntavlldldgkl....vgkyrKlhLfp.geprpptaverelfep.........gdg.ipvfdtpvg..kiGaaiCyeigfpellralalkgaeil 173
                   +ynt+++l   + +    + +y+K+hL+p ge+ p   ++r+l +          +++ +++ +++v+   + +aiCyei  +e++ra+ + ++++l
    EHU01486.1 311 DYNTVIVLGGPKPYnyfsTNRYQKNHLVPfGEFVPMADLLRPLAPFfdlpmsafsRGAyLQP-QLNVAnyHLTTAICYEIVLGEQVRANFRPDTDFL 406
                   *********9999999******************************8888888873322222.555558899************************* PP

                   EEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEE CS
  CN_hydrolase 174 vnlserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeid 252
                   +++s++a++++s+gp+q+++++r+rale+g ++++ +++g+           +a+++ +G +   l+++++gvl+ ++ 
    EHU01486.1 407 LTVSNDAWFGHSIGPWQHFQMARMRALELGRPLLRGTNNGV-----------TAVVNANGDVEKVLPQFTRGVLVDKVT 474
                   *****************************************...........*********************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3635.25
//
Query:       EHU01487.1  [L=293]
Description: putative ion transport [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-22   78.2   0.0    3.6e-22   78.2   0.0    2.2  3  CorC_HlyC  Transporter associated domain
    1.9e-15   57.0   3.8    6.3e-08   33.0   0.1    2.9  3  CBS        CBS domain
  ------ inclusion threshold ------
      0.071   13.4   0.3        2.2    8.6   0.0    2.6  2  DUF1108    Protein of unknown function (DUF1108)


Domain annotation for each model (and alignments):
>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   9.3e+03      64      77 ..      61      74 ..      42      76 .. 0.75
   2 ?   -2.0   0.1      0.63   3.8e+03      10      30 ..     175     195 ..     174     198 .. 0.74
   3 !   78.2   0.0     6e-26   3.6e-22       2      79 ..     206     281 ..     205     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
                EEEEETTCEEEEEE CS
   CorC_HlyC 64 VlemdgrrIkkvrv 77
                Vl++ ++r++ + +
  EHU01487.1 61 VLDIAEQRVRDIMI 74
                88888888887765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.63
                 EETT-BHHHHHHHHTSTTHHC CS
   CorC_HlyC  10 vdGslpldeleeelglelpee 30 
                 v+G ++++++ e++  e+++e
  EHU01487.1 175 VSGLVTIEDILELIVGEIEDE 195
                 788999999888776676664 PP

  == domain 3  score: 78.2 bits;  conditional E-value: 6e-26
                 EECTTEEEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvek 79 
                 +l+ ++y+v + +p+++++e++g+++++++++T+gGl+++ +g++P++ges+++d  g++f+V  +d rrI +v v++
  EHU01487.1 206 QLNRQTYTVRALTPIEDFNEMFGTQFSDDEVDTIGGLVMQGFGHLPARGESIDID--GYQFKVAMADSRRIIQVHVKI 281
                 567899********************************************88888..******************987 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   1.1e-11   6.3e-08       1      54 [.      69     125 ..      69     128 .. 0.86
   2 !   24.1   0.4   6.3e-09   3.8e-05       7      56 ..     140     189 ..     134     190 .. 0.85
   3 ?   -1.6   0.0      0.63   3.8e+03       6      25 ..     208     227 ..     202     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.1e-11
                 HHHH..SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHHH CS
         CBS   1 Vgdi..mtrdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllra 54 
                 V+di  ++++++t++ +++lee+l+ ++++++sr+PV+ ++ +++ Gi+  +Dll +
  EHU01487.1  69 VRDImiPRSQMITLKRNQNLEECLDVIIDSAHSRFPVIsEDKDHVEGILMAKDLLPF 125
                 78885566799***************99**********755557**********965 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 6.3e-09
                 SSCEEEETTSBHHHHHHHHHHHTSS.EEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvs.rlPVVdedgklvGivtlrDllrall 56 
                 r+ v+vp++  +   l+++r+ +++ ++ V+de g + G+vt +D+l++++
  EHU01487.1 140 RPAVVVPESKRVDRMLKEFRSQRYHmAI-VIDEFGGVSGLVTIEDILELIV 189
                 56779999999********999997444.88*****************986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.63
                 BSSCEEEETTSBHHHHHHHH CS
         CBS   6 trdvvtvppdttleealelm 25 
                 +r+  tv+  t++e+  e++
  EHU01487.1 208 NRQTYTVRALTPIEDFNEMF 227
                 55556888889999888877 PP

>> DUF1108  Protein of unknown function (DUF1108)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.047   2.8e+02      52      80 ..     176     204 ..     156     207 .. 0.83
   2 ?    8.6   0.0   0.00037       2.2      13      43 ..     257     287 ..     252     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.047
     DUF1108  52 selyialdilrdviyewieentderdkli 80 
                 s l +  dil+ ++ e  +e  de+d+ i
  EHU01487.1 176 SGLVTIEDILELIVGEIEDEYDDEEDRDI 204
                 67889999999999998889999999977 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00037
     DUF1108  13 isvdGfefklavkkrddsilvqvkdledvfl 43 
                 i++dG++fk+a+      i v+vk  e+  l
  EHU01487.1 257 IDIDGYQFKVAMADSRRIIQVHVKIPENSAL 287
                 89*******************9998777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2107.64
//
Query:       EHU01488.1  [L=157]
Description: uncharacterized UPF0054 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-41  139.6   0.0    5.5e-41  139.4   0.0    1.0  1  UPF0054   Uncharacterized protein family UPF0054
  ------ inclusion threshold ------
       0.04   14.2   0.0       0.07   13.4   0.0    1.4  1  DUF1462   Protein of unknown function (DUF1462)


Domain annotation for each model (and alignments):
>> UPF0054  Uncharacterized protein family UPF0054
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.0   6.1e-45   5.5e-41       5     126 ..      18     142 ..      14     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 139.4 bits;  conditional E-value: 6.1e-45
     UPF0054   5 edleklikkvleealkkekle.evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeee..lGDivisvekakeqaeeyghslerelafllvHgl 100
                   +e+ ++++le+a++ ++ e ev++ lvd++e +eln +yrgkdkpT+VLSFp+e     e   lGD++i+ ++++++a+e+g+s+e ++a+++vHg+
  EHU01488.1  18 LPTESQFQRWLEAAVTPFQPEsEVTIRLVDEQESHELNLTYRGKDKPTNVLSFPFEAPPGIELplLGDLIICRQVVEQEAQEQGKSVEAHWAHMVVHGT 116
                 5678999********8777778***********************************99993367********************************** PP

     UPF0054 101 lHllGYDHeeeeeekeMeekeeeile 126
                 lHllGYDH+e++e++eMe++e+ei+ 
  EHU01488.1 117 LHLLGYDHIEDSEAEEMEGLETEIML 142
                 ************************95 PP

>> DUF1462  Protein of unknown function (DUF1462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.8e-06      0.07       7      50 ..      10      53 ..       4      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.8e-06
     DUF1462  7 viCasCvnlPssketyeWleaalkrkypeqkleleyvDieeeke 50
                  C    nlP+  +   Wleaa++   pe++++++ vD +e++e
  EHU01488.1 10 LACEQTENLPTESQFQRWLEAAVTPFQPESEVTIRLVDEQESHE 53
                5788899*******************************888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1182.48
//
Query:       EHU01489.1  [L=353]
Description: PhoH family ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-96  319.1   0.0    1.2e-95  318.8   0.0    1.1  1  PhoH       PhoH-like protein
      2e-09   37.5   0.0    3.2e-09   36.8   0.0    1.4  1  AAA_30     AAA domain
    8.9e-05   22.9   0.1     0.0003   21.2   0.1    1.8  1  AAA_19     AAA domain
      0.002   17.9   0.0     0.0057   16.4   0.0    1.7  2  IstB_IS21  IstB-like ATP binding protein
     0.0024   17.7   0.0     0.0066   16.2   0.0    1.8  1  DEAD       DEAD/DEAH box helicase
     0.0055   17.0   0.0      0.015   15.6   0.0    1.7  1  AAA_22     AAA domain
  ------ inclusion threshold ------
       0.01   15.4   0.0      0.024   14.2   0.0    1.6  1  AAA_25     AAA domain
      0.059   13.0   0.0        6.1    6.4   0.0    2.3  2  Zot        Zonular occludens toxin (Zot)


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.8   0.0   5.5e-99   1.2e-95       2     205 .]     118     321 ..     117     321 .. 0.99

  Alignments for each domain:
  == domain 1  score: 318.8 bits;  conditional E-value: 5.5e-99
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 ikp+t +Q++y+ ++ ++di+f++GpaGtGKtylava+av+al++++++ri+ltrpaveage+lGflpgdl++kvdpylrplydaL ++lg ekvekl+
  EHU01489.1 118 IKPRTPNQAKYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLM 216
                 9************************************************************************************************** PP

                 HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHHHH CS
        PhoH 101 ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplvkk 199
                 e+++ievaplaymRGrTlndaf+ilDE+Qntt eqmkmfltR+G+nsk+v+tGdvtqidlp+++ksGl++a+evl++ve+i++  ++++dvvRhp+v++
  EHU01489.1 217 ERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRHTKSGLRHAIEVLSEVEEISFNFFHSEDVVRHPVVAR 315
                 *************************************************************************************************** PP

                 HHHHH- CS
        PhoH 200 ivkaye 205
                 iv+aye
  EHU01489.1 316 IVTAYE 321
                 ****97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.4e-12   3.2e-09       4     128 ..     123     274 ..     121     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.4e-12
      AAA_30   4 aeQaaavealltsgdrvavltGpAGtGKtta.lkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk................... 81 
                 ++Qa+ ++++l ++  +++ +GpAGtGKt++ ++a+++a+e++  +r+++  p  +a ++L+   g  ++ ++ +l+ l                    
  EHU01489.1 123 PNQAKYIANILDHD--ITFGVGPAGTGKTYLaVAAAVDALERQeIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYdalfemlgfekveklmern 219
                 68999**9999888..9************962566699999995599999999999999***7666666666666655556666666666666666666 PP

      AAA_30  82 .........grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQl 128
                           r r  ++  +i DE+  + ++q++ +l+++   + k ++ GD  Q 
  EHU01489.1 220 vievaplayMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGF-NSKAVITGDVTQI 274
                 6*****998334555669**********************99.9*********996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.3e-07    0.0003       7     141 ..     132     274 ..     125     276 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.3e-07
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.........atTiHrlalldfddlltea.lelle... 92 
                  l +++ + ++++GtGKT++ +++   ++e++++  ++ill  ++  A ++l      l ++            + ++  l+f++ ++ +  +++e   
  EHU01489.1 132 ILDHDITFGVGPAGTGKTYLAVAAAVDALERQEI--RRILLTRPAVEAGEKLGFLPGDLSQKvdpylrplyD-ALFEM--LGFEKVEKLMeRNVIEvap 225
                 56667777789********988776666666645..9****9999999999987665556667778777852.33333..3444433222022233556 PP

      AAA_19  93 .eaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQl 141
                     + ++l + + +i DE+q+++ e+++ +l ++  ++k  ++ GD  Q 
  EHU01489.1 226 lAYMRGRTL-NDAFIILDESQNTTiEQMKMFLTRIGFNSK-AVITGDVTQI 274
                 644566788.7889**********8888888888885555.8999**9995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06    0.0057      47      74 ..     135     162 ..     108     175 .. 0.81
   2 ?   -2.7   0.0       1.9   4.3e+03      19      45 ..     204     230 ..     200     251 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavra 74 
                 ++    +Gp+G+GK++la+a +v+a ++
  EHU01489.1 135 HDITFGVGPAGTGKTYLAVAAAVDALER 162
                 5555669*****************9985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
   IstB_IS21  19 ledidfraarsldkrkvkeLatlsfie 45 
                 +e + f++ ++l +r+v e+a l++++
  EHU01489.1 204 FEMLGFEKVEKLMERNVIEVAPLAYMR 230
                 566667777777777777777666665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.9e-06    0.0066       1      55 [.     122     173 ..     122     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkaliveP 55 
                 t+ Qa+ i +il+ +  ++ ++ G+GKT  ++ ++++++   ++++  ++l+  P
  EHU01489.1 122 TPNQAKYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL---ERQEIRRILLTRP 173
                 789*********999999******************999...3455556666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.5e-06     0.015      11     112 ..     141     255 ..     134     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.5e-06
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsst..sskdllrellralglelka..erlsseellealeqalrarav.ie 93 
                 +G++GtGKT+l+   +  + e++++++           e+ +++  +l+++    ++ l+ +l++ lg e+ +   + +  e+  + +   r+     +
  EHU01489.1 141 VGPAGTGKTYLAVAAAVDALERQEIRRilltrpaveagEKLGFLPGDLSQKVdpYLRPLYDALFEMLGFEKVEklMERNVIEVAPLAYMRGRT--LnDA 237
                 8**********99999999899999999**999999888888888888888877788899999999998888833334444444444444444..366* PP

      AAA_22  94 lliiDEaqhlrseealeeL 112
                 ++i+DE q+  + e+++ +
  EHU01489.1 238 FIILDESQNT-TIEQMKMF 255
                 *********8.65555444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.024      15      59 ..     118     161 ..     106     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
      AAA_25  15 laapppprrwlvkgllpagelallaGapgtGKttlaldlalavat 59 
                 ++ + p + +++ ++l  ++++  +G+ gtGKt la+  a++ ++
  EHU01489.1 118 IKPRTPNQAKYIANIL-DHDITFGVGPAGTGKTYLAVAAAVDALE 161
                 56689999999****8.6**********************98774 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0027       6.1       2      27 ..     137     161 ..     136     180 .. 0.76
   2 ?    3.9   0.0     0.017        37      75      92 ..     232     247 ..     201     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0027
         Zot   2 islvtGapGsgKtsgavkkdllpalk 27 
                 i +  G+ G+gKt+ av   +++al 
  EHU01489.1 137 ITFGVGPAGTGKTYLAVAA-AVDALE 161
                 67889************99.556655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.017
         Zot  75 watidkgallviDEcqei 92 
                 +    ++a++++DE q++
  EHU01489.1 232 RT--LNDAFIILDESQNT 247
                 33..39********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 2797.47
//
Query:       EHU01490.1  [L=474]
Description: isopentenyl-adenosine A37 tRNA methylthiolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-30  104.2   0.0    5.3e-30  103.4   0.0    1.4  1  UPF0004      Uncharacterized protein family UPF0004
    4.7e-28   98.7   0.0    7.5e-28   98.0   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    9.5e-19   67.2   0.7    2.1e-18   66.1   0.7    1.6  1  TRAM         TRAM domain
  ------ inclusion threshold ------
      0.022   14.9   0.5      0.079   13.1   0.5    2.0  1  TRAM_2       TRAM domain
      0.033   14.0   0.0       0.07   13.0   0.0    1.5  1  L_protein_N  L protein N-terminus
      0.034   14.2   0.1       0.34   11.0   0.0    2.5  3  B12-binding  B12 binding domain


Domain annotation for each model (and alignments):
>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.8e-33   5.3e-30       1      98 []       4     104 ..       4     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1.8e-33
                 XEEEE--S-CCCCHHHHHHHHHTTTS.SS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTS..T.--EEEEEEHHHHS-HHHHHHH-TTS-EE CS
     UPF0004   1 kvaietlGCqmNevdseelaslLkke.gyelvedeeeAdvvlvnTCavrekaekkviqalrelkalk..kpekkvvvlGCmaqrekeellkeepevdlv 96 
                 k++i+t+GCqmNe+ds+++ +lL++  gy+l+e++eeAd++l+nTC++reka++kv+++l+++k+lk  +p+ +++v GC+a++e++++ +++p vd+v
  EHU01490.1   4 KLHIKTWGCQMNEYDSSKMSDLLNSThGYTLTEEAEEADILLLNTCSIREKAQEKVFHQLGRWKKLKerNPDLIIGVGGCVASQEGDHIRQRAPCVDIV 102
                 689********************8755****************************************8779**************************** PP

                 E- CS
     UPF0004  97 lg 98 
                 +g
  EHU01490.1 103 FG 104
                 98 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   2.5e-31   7.5e-28       1     167 []     151     325 ..     151     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 2.5e-31
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.........TTHHHHHHHHHHTCCCTEEEEEEECSSCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly.........pdfvellerlaklavpgiritvetngtlp 89 
                  v++++gCn  C+fC +p+   ++g + s++ ++il e+ +l a +gv+ev l+g+++++y           f+ell+  a++ +   ri+++tn++  
   EHU01490.1 151 VSIMEGCNKYCTFCVVPY---TRGEEVSRPSDDILLEIAQL-AAQGVREVNLLGQNVNAYrgetfdgdvCTFAELLRLVAAI-DGIDRIRFTTNHPIE 243
                  689**************9...7*******************.8999**************6666666664455556555555.59***********96 PP

                  G.HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHHH CS
                  x.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  90 d.eeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellell 167
                    +++++  ++ +  v  ++l+++++ d+ +l lm+r ht  e+++ ++klr+a  ++   ++d+ivg+pGe+ +++e++++l+
   EHU01490.1 244 FtDDIIDVYRDTPelVSFLHLPVQSGADR-ILTLMKRAHTALEYKAIIRKLRAA-RPDieiSSDFIVGFPGETQQDFEQTMKLI 325
                  59***************************.************************.677799*******************9986 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.7   6.9e-22   2.1e-18       1      62 []     378     440 ..     378     440 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 6.9e-22
                 XXXXXXEEEEEEEEE-..TTSEEEEEET.TEEEEETT--T...TEEEEEEEEEE-SSEEEEEEE CS
        TRAM   1 rsyvGstqeVlvegls.ksegegiGrtdngkvvfvpgdlpg.IGdfVeVkItkvkrqyLrGell 62 
                 r++ Gs+q++lveg s k+ +e++Grt+n++vv+++g+  + IG+fV+V+I +v+ ++LrG+l+
  EHU01490.1 378 RRMLGSVQRILVEGISrKNVMELTGRTENNRVVNFEGP-VEmIGKFVDVEIVDVYTNSLRGKLV 440
                 689**********************************5.777*******************997 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   2.6e-05     0.079       2      64 .]     382     440 ..     381     440 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                 TSEEEEEEEE...EETTEEEEEETTS-TTTS--EEEES---T...T-EEEEEEEEEETTEEEEEE- CS
      TRAM_2   2 Gktvevlvdg...eeeglyvGRsyadAPEvDgevyvtgaeklskvGdfvkvkItdadeyDLiGevv 64 
                 G++ ++lv+g   ++ + ++GR++ +      +v ++g+ +   +G+fv+v+I+d++   L G++v
  EHU01490.1 382 GSVQRILVEGisrKNVMELTGRTENN-----RVVNFEGPVEM--IGKFVDVEIVDVYTNSLRGKLV 440
                 77778888887544444578887665.....78888876553..7******************997 PP

>> L_protein_N  L protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.3e-05      0.07      11      67 ..      12      78 ..       7      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
  L_protein_N 11 aldaeiakdidsdllnarHdyffrelcdsldiefrndvplidilld..........eidnltPDnii 67
                 ++ +e  + ++sdlln  H y+  e +++ di + n   + +  ++          + +   PD ii
   EHU01490.1 12 CQMNEYDSSKMSDLLNSTHGYTLTEEAEEADILLLNTCSIREKAQEkvfhqlgrwkKLKERNPDLII 78
                 5667788999*******************************99999999999999888888899888 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.34      73     114 ..      61     107 ..      35     111 .. 0.68
   2 ?   -1.0   0.0      0.58   1.7e+03      23      41 ..     187     219 ..     182     253 .. 0.70
   3 ?   -1.7   0.0      0.93   2.8e+03      41      54 ..     287     300 ..     268     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  B12-binding  73 el......lkrirprvkvvvGGahpsldpeetleaklgiddvvvgege 114
                  ++      lk+++p++++ vGG ++s   + + +    ++d+v+g  +
   EHU01490.1  61 HQlgrwkkLKERNPDLIIGVGGCVASQEGDHIRQR-APCVDIVFGPQT 107
                  3335567799*************999999997765.555888*99876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.58
  B12-binding  23 alrdagf.eVqllganven.............e 41 
                   l ++g+ eV llg nv++             +
   EHU01490.1 187 QLAAQGVrEVNLLGQNVNAyrgetfdgdvctfA 219
                  444556658999999998877755544444443 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.93
  B12-binding  41 edivaairaekpdv 54 
                  ++i++++ra +pd+
   EHU01490.1 287 KAIIRKLRAARPDI 300
                  66777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3413.27
//
Query:       EHU01491.1  [L=390]
Description: 2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-27   96.3   0.0    2.7e-27   95.9   0.0    1.1  1  FAD_binding_3   FAD binding domain
      2e-09   37.5   1.4    4.5e-06   26.5   0.1    2.4  2  DAO             FAD dependent oxidoreductase
    5.9e-08   32.3   0.0    0.00074   18.8   0.0    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      2e-07   30.4   1.8    9.9e-07   28.1   1.8    1.9  1  Lycopene_cycl   Lycopene cyclase protein
    1.2e-05   25.4   0.1    3.7e-05   23.9   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    5.8e-05   23.6   0.0    0.00073   20.1   0.0    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00013   20.9   0.0       0.57    9.0   0.0    2.8  2  Trp_halogenase  Tryptophan halogenase
     0.0013   18.8   0.4      0.048   13.7   0.4    2.3  1  NAD_binding_9   FAD-NAD(P)-binding
     0.0018   17.4   0.6     0.0043   16.2   0.6    1.6  1  FAD_binding_2   FAD binding domain
     0.0025   16.9   0.0     0.0048   16.0   0.0    1.5  2  SE              Squalene epoxidase
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.036   13.3   0.0    1.7  2  Thi4            Thi4 family
      0.031   13.0   1.1       0.36    9.5   0.3    2.1  2  HI0933_like     HI0933-like protein
       0.13   10.8   0.0        4.7    5.7   0.0    2.1  2  Mqo             Malate:quinone oxidoreductase (Mqo)
       0.15   12.0   0.0       0.26   11.2   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.17   12.3   0.1       0.36   11.3   0.1    1.7  1  NAD_binding_7   Putative NAD(P)-binding
       0.86    8.9   2.5        3.7    6.8   1.7    1.9  2  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   2.4e-30   2.7e-27       2     339 ..       6     338 ..       5     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 2.4e-30
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS......S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp......radglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle 91 
                     dV+IVG+G +G+ la  L+++  rv ++e+ +    +p      r + + + ++ ll+ql +++r++a+        e+++ +   t +++ d e
     EHU01491.1   6 FDVVIVGGGMVGAALACGLAQHRFRVAVIERATPPPFDPdslpdvRISAVGSSSVALLKQLNVWQRVEAMRCAPYRKLETWEWQ---TAQVSFDAE 98 
                    69*****************************98665444445555************************997666666666666...568888888 PP

                    CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEE CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagv 187
                     +  pe  +++  t l+r+L e+ ++rg+++   + +e    d +  +a  + + ++ + tv+ak +vGaDG+ S+vr+ +gi ++g +      +
     EHU01491.1  99 SLGLPELGYMVENTVLQRALWEEMTQRGITLLCPATME----DLQPCNAGWTLSLSNGT-TVTAKLVVGADGASSQVRQMAGIGIHGWSYAQSCLL 189
                    8899999************************9999988....77777777777766666.9****************************9988888 PP

                    EEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSEE CS
  FAD_binding_3 188 ldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaqrvaekyrk 283
                    ++v+ + +      + ++ + ++++  +++Pl  +     +++   a + ++ +++  +++ +++  ++     +  +  +  +++ +r a +y  
     EHU01491.1 190 ISVTCEHPAG----DATWQHFTPDGPRAFLPLFGHHAS--LVWYDAAARIRQLQAMPVAQLEKEIAHHFPARLGRFHVHAAGGFPLVRRHAARYVL 279
                    8888887555....5799999999999*******3332..22222223334456666788889999999999999999****************** PP

                    TTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHH...HTTSS-GGGGHHHHHHHH CS
  FAD_binding_3 284 grvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaav...lkGeAkeelLdtYeeerr 339
                      + l+GDAaH+  P +GqG+N++ +D   L+  L+a+    + + +e++L  Y+++rr
     EHU01491.1 280 PGLALVGDAAHTINPLAGQGVNLGYRDIDALMDVLIAArdnAETWSSERVLLRYQRQRR 338
                    ***********************************997222344778899999999887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1     4e-09   4.5e-06       1      30 [.       7      38 ..       7      42 .. 0.92
   2 !   10.0   0.1   0.00042      0.47     134     227 ..      99     189 ..      55     300 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4e-09
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgd 30
                dvvi+GGG++G++ A  La++   V+++e++ 
  EHU01491.1  7 DVVIVGGGMVGAALACGLAQHRfrVAVIERAT 38
                9********************999******94 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00042
                 EEEETTEEEE.EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHH.HTTCTTTSEEEE.EEEEEEEE CS
         DAO 134 alfypdtgqv.dpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdll.gllkeldlpisp.vrgqvlvl 227
                 +l+ p+ g + +   l +al +++ ++G+++l  ++ ++l ++ + +w++   ++g++++a+ vV a Ga s+ + ++++ +   i++   +q++ l
  EHU01491.1  99 SLGLPELGYMvENTVLQRALWEEMTQRGITLLCPATMEDL-QPCNAGWTLS-LSNGTTVTAKLVVGADGASSQ-VrQMAG-I--GIHGwSYAQSCLL 189
                 466777655558888999*********************9.444679***4.444887556889999999986.423332.2..2222244444444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.6e-07   0.00074       1      33 [.       6      38 ..       6      76 .. 0.84
   2 !   11.4   0.0   0.00012      0.14     185     240 ..     114     169 ..     102     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6.6e-07
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 +dvv++GgG+ G a+a  laq+ ++v+++e+ +
   EHU01491.1  6 FDVVIVGGGMVGAALACGLAQHRFRVAVIERAT 38
                 59***************************6433 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00012
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrps 240
                  l++al+e+++++G+++ + ++++++++ +   ++ l++g+++ a+lvv a G + +
   EHU01491.1 114 LQRALWEEMTQRGITLLCPATMEDLQPCNAGWTLSLSNGTTVTAKLVVGADGASSQ 169
                  68899*************************999***************99998765 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   1.8   8.9e-10   9.9e-07       1     146 [.       7     171 ..       7     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 8.9e-10
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlga......................leecvehsWsgtivylddgkk 74 
                    Dvv++G+G  g +lA  l  a+ + +v +ie +  ++f ++       +++g+                      + ++ +  W+ ++v +d+++ 
     EHU01491.1   7 DVVIVGGGMVGAALACGL--AQHRFRVAVIERATPPPFDPDSLPDVRISAVGSssvallkqlnvwqrveamrcapYRKLETWEWQTAQVSFDAESL 100
                    9*****************..9999*******999999**99999999999999999**************************************** PP

  Lycopene_cycl  75 illgraYgrvsskrlkeellerlvengvkl.leakvesveeeeageslvvleggrkirarlvvdarglaslkk 146
                     l ++ Y +v+ + l++ l e++ + g++l   a+ e  ++ +a   +  l++g ++ a+lvv a g+ s+ +
     EHU01491.1 101 GLPELGY-MVENTVLQRALWEEMTQRGITLlCPATMEDLQPCNA-GWTLSLSNGTTVTAKLVVGADGASSQVR 171
                    ****999.79999999999999997777651689*****99999.88999*****************766654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   3.3e-08   3.7e-05       1      28 [.      10      37 ..      10      40 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.3e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   IvG+G+ G+++A+ La+++f+v ++e++
     EHU01491.1 10 IVGGGMVGAALACGLAQHRFRVAVIERA 37
                   9*************************97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.5e-07   0.00073       2      32 ..       8      38 ..       7      46 .. 0.91
   2 ?    0.6   0.0      0.75   8.4e+02      41      67 ..     113     139 ..     103     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.5e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                vv+vGgG +g  lA+ la+++ +V v+er+ 
  EHU01491.1  8 VVIVGGGMVGAALACGLAQHRFRVAVIERAT 38
                8****************************86 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkveeie 67 
                  ++++l e+++++gi++l  ++ e ++
  EHU01491.1 113 VLQRALWEEMTQRGITLLCPATMEDLQ 139
                 567788899********9998888765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00063       0.7       1      37 [.       7      40 ..       7      45 .. 0.86
   2 !    9.0   0.0   0.00051      0.57     256     356 ..     209     320 ..      59     340 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00063
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                    ++vivGGG  G   A+ la++    ++v ++e ++ +
      EHU01491.1  7 DVVIVGGGMVGAALACGLAQHR---FRVAVIERATPP 40
                    69*********98888888777...99****998765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00051
                     SEEEEEEEETTEEEEEEEE-TTTS-HHHHHHHHHHHCT--TTTS-.EEEE---EE...............ES-SEETTEEE-CCCTEE--CCCS- CS
  Trp_halogenase 256 aGWtWkiPLqhrlgnGyvyssahadddeAlaellaeldgkleaep.rkirfttGr...............rkqawvknvvalGlasgfvePlest 334
                      G +   PL +   + +v+  a a     +++l+a+  ++le+e  ++ + + Gr                +++  +++ ++G+a+  ++Pl ++
      EHU01491.1 209 DGPRAFLPLFGHHAS-LVWYDAAA----RIRQLQAMPVAQLEKEIaHHFPARLGRfhvhaaggfplvrrhAARYVLPGLALVGDAAHTINPLAGQ 298
                     555555555555554.44433333....2333333333333333234555555555555577777777667788889999*************** PP

                     HHHHHHHHHHHHHHT--BTT-- CS
  Trp_halogenase 335 sihliqaalrrLlallpdksde 356
                     ++ l +++++ L+ +l +  d+
      EHU01491.1 299 GVNLGYRDIDALMDVLIAARDN 320
                     *************998766554 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.4   4.2e-05     0.048       1     154 [.       9     165 ..       9     167 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdq.seelllNvpasemslftddp.............ptfaeWlrerga...l 79 
                    +ivG+G+ G+a++  L+++     ++++ ++++++p    ++++d  ++  +  v +s + l+++ +             +++++W  + ++   +
     EHU01491.1   9 VIVGGGMVGAALACGLAQH-----RFRVAVIERATPP---PFDPDSlPDVRISAVGSSSVALLKQLNvwqrveamrcapyRKLETWEWQTAQvsfD 96 
                    79****************9.....6********8887...78999866777777888888888887788888888888885555555554433331 PP

  NAD_binding_9  80 ee.......aeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                             +  + ++++++R        +l+ee+++   +g+t+ ++ a+ +dl++ ++g+++ l++g++++a+ Vv A G
     EHU01491.1  97 -AeslglpeLGYMVENTVLQR--------ALWEEMTQ---RGITL-LCPATMEDLQPCNAGWTLSLSNGTTVTAKLVVGADG 165
                    .12111111222222233333........33333332...23333.457889999999999999999999999999997766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   3.8e-06    0.0043       1      32 [.       7      38 ..       7      40 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeq 32
                   Dv+++G+G+ G a A  +a++  +vav+e + 
     EHU01491.1  7 DVVIVGGGMVGAALACGLAQHRFRVAVIERAT 38
                   9***************************9865 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         3   3.4e+03       2      17 ..     157     172 ..     156     173 .. 0.90
   2 !   16.0   0.0   4.3e-06    0.0048     125     202 ..     275     352 ..     239     372 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
          SE   2 AkltvvcDGifsklRk 17 
                 Akl v +DG  s++R+
  EHU01491.1 157 AKLVVGADGASSQVRQ 172
                 99**********9996 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.3e-06
          SE 125 sknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialy 202
                  +    Gl l+GDa     Pl g G+  +++Di  l+++l   +d  ++ +   +l  + ++R++ +  +    + +y
  EHU01491.1 275 ARYVLPGLALVGDAAHTINPLAGQGVNLGYRDIDALMDVLIAARDNAETWSSERVLLRYQRQRRHDNLLMQSGMDLFY 352
                 455568*************************************99999999999999999999987766655555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.036      18      50 ..       6      37 ..       2      40 .. 0.93
   2 ?   -3.0   0.0         3   3.3e+03     211     233 ..     338     361 ..     321     362 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailers 50
                 DvvivG+G  G + a  la++  ++va++er 
  EHU01491.1  6 FDVVIVGGGMVGAALACGLAQH-RFRVAVIERA 37
                6*********************.********96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3
                 EETTE.EE-THHHHHHHT-EB--S CS
        Thi4 211 vvpnl.yvaGmevaevdganRmGp 233
                   +nl + +Gm++  +   nR+Gp
  EHU01491.1 338 RHDNLlMQSGMDLFYFTFSNRVGP 361
                 345541568999999999999998 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00032      0.36       1      32 [.       6      37 ..       6      40 .. 0.94
   2 ?    1.9   0.0     0.063        71     113     166 ..     116     168 ..     109     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00032
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllleka 32
                 +dv+++GgG  G   A  +a++  rV+++e+a
   EHU01491.1  6 FDVVIVGGGMVGAALACGLAQHRFRVAVIERA 37
                 59****************************87 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.063
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlS 166
                  +al +e++++g++l    ++++++  + g  +++++++++++a+ +v A G  S
   EHU01491.1 116 RALWEEMTQRGITLLCPATMEDLQPCNAG-WTLSLSNGTTVTAKLVVGADGASS 168
                  78999******************998888.999**8888888888888877776 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0042       4.7       2      35 ..       5      36 ..       4      40 .. 0.78
   2 ?    3.0   0.0     0.027        31     174     252 ..     106     176 ..      97     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0042
         Mqo  2 kvdvvliGaGimsatlgvllkelepelsievler 35
                + dvv++G+G++ a+l+  l +   +++++v+er
  EHU01491.1  5 QFDVVIVGGGMVGAALACGLAQ--HRFRVAVIER 36
                68***************98875..4455556665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.027
         Mqo 174 GtdvnfgaltrqllkalekkkgvelklkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgi 252
                 G  v+   l r+l ++++ ++g++l +  +++dl+  +   W++++++      ++v+ak v +Ga G++ ++ q +gi
  EHU01491.1 106 GYMVENTVLQRALWEEMT-QRGITLLCPATMEDLQPCNA-GWTLSLSNG-----TTVTAKLV-VGADGASSQVRQMAGI 176
                 666788889999999995.59*************99887.5***99964.....45677765.9****99999999988 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023      0.26       2      31 ..       8      37 ..       7      47 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdis 31
                v ++G G++Ga +a  +a++ ++V +++++
  EHU01491.1  8 VVIVGGGMVGAALACGLAQHRFRVAVIERA 37
                89************************9985 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00032      0.36       7      40 ..       5      38 ..       1     137 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleagakvtvvapev 40
                   +  v++vGgG v+a  +  l++   +v v+  ++
     EHU01491.1  5 QFDVVIVGGGMVGAALACGLAQHRFRVAVIERAT 38
                   5789*************************98875 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.7    0.0033       3.7       1      30 [.       7      36 ..       7      39 .. 0.94
   2 ?    0.6   0.0      0.26   2.9e+02      77     142 ..      84     163 ..      50     177 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0033
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  Dvv+vGGg+ G a A   a++  +v+++e+
    EHU01491.1  7 DVVIVGGGMVGAALACGLAQHRFRVAVIER 36
                  9*************************9998 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.26
  FAD_oxidored  77 krskwn..................tfepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDA 142
                   ++++w+                  ++e +v++++l e +++ g+t+l  +++++ +  +   + + + +   ++t++Ak+++ A
    EHU01491.1  84 ETWEWQtaqvsfdaeslglpelgyMVENTVLQRALWEEMTQRGITLLCPATMEDLQPCN-AGWTLSLSN---GTTVTAKLVVGA 163
                   555553345667777777888888899999888776666677*****999999999875.445555543...788888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 2851.55
//
Query:       EHU01492.1  [L=555]
Description: asparagine synthetase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.5e-102  343.2   0.4    4.5e-59  200.9   0.2    2.1  2  Asn_synthase  Asparagine synthase
    1.9e-42  144.1   0.0    3.1e-42  143.4   0.0    1.4  1  GATase_7      Glutamine amidotransferase domain
    1.2e-36  125.8   0.0    2.8e-36  124.7   0.0    1.6  1  GATase_6      Glutamine amidotransferase domain
    5.4e-09   35.8   0.0    1.1e-08   34.8   0.0    1.4  1  DUF3700       Aluminium induced protein
  ------ inclusion threshold ------
       0.16   11.1   0.0       0.27   10.3   0.0    1.4  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9   0.2   1.2e-62   4.5e-59       2     143 ..     212     366 ..     211     370 .. 0.98
   2 !  142.2   0.0   8.7e-45   3.1e-41     203     334 ..     366     512 ..     364     534 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.9 bits;  conditional E-value: 1.2e-62
  Asn_synthase   2 lrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsk.............splktFsigfeekgsdeakyakevaehlgtehtelvlteeell 85 
                   l+++Le++Vk++l++dvp+G+lLSGGlDSS+i+a+ +r+++             ++l++F++g+  +gs+++k+ak vaehlgt h+e+++t++e+l
    EHU01492.1 212 LKHALEESVKSHLMSDVPYGVLLSGGLDSSIISAVTKRFAAkrvedqdksdawwPQLHSFAVGL--EGSPDLKAAKLVAEHLGTVHHEIHFTVQEGL 306
                   7899************************************************************..******************************* PP

  Asn_synthase  86 dalpdviyhlee..pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaal 143
                   da++dviyh+e+  ++++r+++p+yl+sr++k++g+k+vLsGeGaDE+fgGY+yf+ka+ 
    EHU01492.1 307 DAIRDVIYHIETydVTTIRASTPMYLMSRKIKAMGIKMVLSGEGADEVFGGYLYFHKAPD 366
                   *********************************************************995 PP

  == domain 2  score: 142.2 bits;  conditional E-value: 8.7e-45
  Asn_synthase 203 gedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrg...gieKyiLRealegylPeeileRpKegfsapvgewk 296
                   +++e+h+e +++l  l+++d+ r+++a+ a+g+EaRvPflD+++++va+r++p++k++g   + eK+iLRe++  ylPe++++R+Ke+fs++vg+++
    EHU01492.1 366 DAKEFHEENVRKLLALHMFDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGsngKMEKHILRECFSSYLPESVAWRQKEQFSDGVGYSW 462
                   6789*********************************************************9*********************************** PP

  Asn_synthase 297 lkgelrelaeellsds.............rlakeglldreaveelleehea 334
                   ++ +l+e a++++sd+             + +ke++l+re++eel++ ++a
    EHU01492.1 463 ID-TLKEVAAKQISDQqlatahfrfpyntPGSKEAYLYREIFEELFPLPSA 512
                   *9.**************************9****************99988 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   8.7e-46   3.1e-42       1     121 [.      48     165 ..      48     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 8.7e-46
    GATase_7   1 hrrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 h+rlsi+d+++gaQP++ ++d++ v+++nGeiyN++ lr+eL+++ ++f+t sD+ev+lal+++ +g ++l++l+GmfAf+++d+ ++++l+ RD++Gi
  EHU01492.1  48 HERLSIVDVNNGAQPLY-NADHTHVLAVNGEIYNHQALRAELSDR-YSFQTGSDCEVILALYQE-KGVDFLDELQGMFAFILYDTVKQTYLIGRDHIGI 143
                 89***************.69**********************986.9***************97.9********************************* PP

    GATase_7 100 kPLyygedkgdallfaSelkal 121
                  PLy+g+d++++l++aSe+kal
  EHU01492.1 144 IPLYMGNDEHGNLFVASEMKAL 165
                 *********88**********9 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.0   7.8e-40   2.8e-36       1     134 []      33     161 ..      33     161 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 7.8e-40
    GATase_6   1 pdasglaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafa 99 
                 pd sg+  + +d+++laH Rl+iv+ +  +gaqP++++d +++l++NGeiyn+++lr+el++  +++f++ sD+ev+lal++e G + l++l+Gmfaf 
  EHU01492.1  33 PDWSGV--YADDHAILAHERLSIVDVN--NGAQPLYNADHTHVLAVNGEIYNHQALRAELSD--RYSFQTGSDCEVILALYQEKGVDFLDELQGMFAFI 125
                 788999..99****************7..********************************9..*********************************** PP

    GATase_6 100 iwdkrentlilardrlgvkplyyavd.esglafase 134
                 ++d  ++t+ + rd++g+ ply++ d +++l +ase
  EHU01492.1 126 LYDTVKQTYLIGRDHIGIIPLYMGNDeHGNLFVASE 161
                 ************************999999999998 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.1e-12   1.1e-08     126     198 ..     115     186 ..     109     202 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 3.1e-12
     DUF3700 126 vkdleGkfafvlydskaktvfvaldadgsvplyWGiaadgsvvisddlelvkksCgksfapfPkGclftsegG 198
                 + +l+G faf+lyd+ ++t ++ +d+ g +ply G +  g++ ++ +++ +   C +++  fP G   +s  G
  EHU01492.1 115 LDELQGMFAFILYDTVKQTYLIGRDHIGIIPLYMGNDEHGNLFVASEMKALVPVC-RTIKEFPPGSYLSSTDG 186
                 789***********************************************99999.57899****99888766 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   7.7e-05      0.27       6      43 ..     213     256 ..     209     361 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.7e-05
                   HHHHHHHHHHCTTSEEEEE..E-SSHHHHHHHHHHHHHH....T CS
  NAD_synthase   6 vdflkeyvkkagakgvvlG..lSGGvDSslvaalavkal....g 43 
                   ++ l+e vk++ ++ v +G  lSGG+DSs+++a++++      +
    EHU01492.1 213 KHALEESVKSHLMSDVPYGvlLSGGLDSSIISAVTKRFAakrvE 256
                   6778999999999999999767*********9999876545553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.21s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4037.91
//
Query:       EHU01493.1  [L=250]
Description: UMP phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-24   85.1   0.0    5.8e-24   84.1   0.0    1.5  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
    5.5e-21   74.4   0.0    1.3e-20   73.2   0.0    1.7  2  Hydrolase_like  HAD-hyrolase-like
    8.1e-13   49.1   0.0    1.2e-12   48.6   0.0    1.4  1  Hydrolase       haloacid dehalogenase-like hydrolase
    2.5e-10   40.7   0.0    9.4e-08   32.3   0.0    2.3  2  HAD_2           Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.061   13.7   0.0       0.32   11.4   0.0    2.1  3  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   1.6e-27   5.8e-24       1     101 []       6     105 ..       6     105 .. 0.98
   2 ?   -3.5   0.0       3.2   1.2e+04      71      90 ..     183     202 ..     178     206 .. 0.54

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 1.6e-27
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHHHSXXXEEEEESXHHHHHHHHHT CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkkrkadkkvlvigeeglreelkea 98 
                  +++DidGvL+++++a+pga+e+l+++ a+ +p+v+lTN  s++ +++a+++++ g+di ++ ++tsa+a+a++l++ +++kk +vige +l +el +a
   EHU01493.1   6 VICDIDGVLMHDNTAVPGAKEFLQRILAKDMPLVVLTNYPSQTARDLANRFSSAGIDIPDSVFYTSAMATADFLRR-QEGKKAYVIGEGALVHELYKA 102
                  68*************************************************************************8.9******************** PP

                  TXE CS
  Hydrolase_6  99 gfk 101
                  gf+
   EHU01493.1 103 GFT 105
                  *95 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
                  HHHHHHHSXXXEEEEESXHH CS
  Hydrolase_6  71 aeylkkrkadkkvlvigeeg 90 
                  ++ l+k +a++   vi++++
   EHU01493.1 183 RAALNKMQAHSEDTVIVGDN 202
                  55555555555555555554 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.4   8.7e+03       7      28 ..      66      91 ..      64      92 .. 0.52
   2 !   73.2   0.0   3.6e-24   1.3e-20       2      74 ..     174     246 ..     173     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.4
                    SHHHHHHHHHH....---GGGEEEEE CS
  Hydrolase_like  7 pemydfalevl....gsdpeevlmiG 28
                     ++y +a++        + ++ ++iG
      EHU01493.1 66 SVFYTSAMATAdflrRQEGKKAYVIG 91
                    55666666665333333345567776 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 3.6e-24
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74 
                     +gKP+p ++++al+++++++e+++++GD+l+tDi+++ +aG++++LVl+Gv++ +d  + +++p+++++++a+
      EHU01493.1 174 VGKPSPYIMRAALNKMQAHSEDTVIVGDNLRTDILAGFQAGLETILVLSGVSTLSDIDAMPFRPDWIFPSVAD 246
                     59********************************************************999*********998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   3.4e-16   1.2e-12       1     210 []       3     214 ..       3     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 3.4e-16
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH........HHCHHHHHHHHHHHHHHHHH..HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletg........sehpigkalvaaakarsgal..tgfatfigrgayaigkpewltaldippdlgaa 89 
                 ik v+ D+dG+L + +  v  + + +++ la+ + ++        + + +++++  a  +++ ++  t+  + +++ + ++gk+ ++  +      ga 
  EHU01493.1   3 IKNVICDIDGVLMHDNTAVPGAKEFLQRILAKDMPLVvltnypsqTARDLANRFSSAGIDIPDSVfyTSAMATADFLRRQEGKKAYVIGE------GAL 95 
                 789**********99955555555554446666666666777799999999999999999977776655555566669999999999999......999 PP

                 HHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES........STTTSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxx RF
   Hydrolase  90 igsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet........vakpspegkv 180
                 ++++ ++g t   +  + + v+  +   + ++ + +  a + a+g   +++t+ +  +a+     +G       +++ ie+        v+kpsp +++
  EHU01493.1  96 VHELYKAGFTITDV--KPDFVIVGETRSFNWDMM-HKAAFFVANGA-RFIATNPDT-HARGFVPACG------ALCAGIEKisgrrpfyVGKPSPYIMR 183
                 9999**********..********9886666665.55566678999.9****8886.6666777788......4444455455567788********** PP

                 HHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 181 aaireLqgkpeevamVGDgvn.DaaalaaAg 210
                 aa++++q+  e+++ VGD++  D+ a+ +Ag
  EHU01493.1 184 AALNKMQAHSEDTVIVGDNLRtDILAGFQAG 214
                 ***************************9998 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0028        10      79     116 ..      19      56 ..       6      61 .. 0.87
   2 !   32.3   0.0   2.6e-11   9.4e-08     122     178 .]     163     220 ..     141     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0028
       HAD_2  79 kpydgvkelLeeLkeagyklgivTsksreaveekleql 116
                 + ++g+ke+L+ + ++++ l + T+  ++++++  +++
  EHU01493.1  19 TAVPGAKEFLQRILAKDMPLVVLTNYPSQTARDLANRF 56 
                 6789*********************9999998877665 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2.6e-11
       HAD_2 122 FdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikviav 178
                 +++i +   +   KP+p ++++al+k+++++e++++vGD+  tDi a+ +ag+++i v
  EHU01493.1 163 IEKISGRRPFYVGKPSPYIMRAALNKMQAHSEDTVIVGDNLrTDILAGFQAGLETILV 220
                 688999999999*******************************************986 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.24   8.7e+02       1      15 [.       6      20 ..       6      21 .. 0.88
   2 ?   11.4   0.0     9e-05      0.32      87     124 ..      21      60 ..      13     102 .. 0.78
   3 ?   -3.0   0.0       2.2     8e+03     156     179 ..     184     201 ..     139     203 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.24
         HAD  1 alfDfDgTLldgdsl 15
                +++D+Dg L++++++
  EHU01493.1  6 VICDIDGVLMHDNTA 20
                79********99875 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 9e-05
         HAD  87 dpgalellaahraaGdrvvvvSgglrplvepllaelg..a 124
                  pga+e+l++ +a+  ++vv+++ +++ ++ l++++    
  EHU01493.1  21 VPGAKEFLQRILAKDMPLVVLTNYPSQTARDLANRFSsaG 60 
                 49*******999*********************9988551 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.2
         HAD 156 aalrewlaaegegidleevvayGD 179
                 aal++        ++ e++v +GD
  EHU01493.1 184 AALNK------MQAHSEDTVIVGD 201
                 33333......2222233555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1928.96
//
Query:       EHU01494.1  [L=406]
Description: DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-91  305.7   0.7    4.5e-91  305.4   0.7    1.1  1  ROK             ROK family
    2.7e-07   30.4   0.0    9.2e-07   28.7   0.0    1.9  1  MarR            MarR family
      7e-05   22.3   0.4    0.00053   19.5   0.2    2.2  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0003   20.6   0.3    0.00086   19.1   0.3    1.8  1  MarR_2          MarR family
     0.0011   18.9   0.1     0.0025   17.8   0.1    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0019   18.3   0.0     0.0044   17.2   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0075   15.9   0.3      0.018   14.7   0.1    1.7  2  SMC_ScpB        Segregation and condensation complex subunit 
  ------ inclusion threshold ------
      0.036   13.8   0.0      0.092   12.6   0.0    1.8  1  HTH_IclR        IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.4   0.7     2e-94   4.5e-91       1     293 [.      88     392 ..      88     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 305.4 bits;  conditional E-value: 2e-94
                 EEEEEE-SSEEEEEEEETTS-EEEEEEE...EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHH CS
         ROK   1 tigidiGgtkialalvdeegeilarekv...etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerl 96 
                 tig+++G+++++l+l+d +g+ la++ +   ++++e +e++l daia+++++ e+k +elia+++++pGl+++ +g i ++p+i++++++lv++l++r+
  EHU01494.1  88 TIGVRLGRNDATLTLFDLSGKSLAQQDYplpQRTQEALEQALFDAIAHFIQQSEAKIRELIAISVILPGLVDPLNGVIRYMPHIHVNQWPLVANLKHRF 186
                 59**************************99889999*************************************************************** PP

                 TS-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC..... CS
         ROK  97 nvpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq..... 190
                 nv+ +v +D++++alaE++fga  d+ ++i+v++++G+GaG+i ng+++ G+nG++ge+GHiq+dp ge+c+CGn gClEt+a++ a+e r+++     
  EHU01494.1 187 NVTSFVGHDIRSLALAEHYFGATRDCADSILVRLHRGTGAGIIANGQIFLGSNGNVGEIGHIQVDPLGERCHCGNFGCLETIAANSAIEHRVSEllnkg 285
                 *************************************************************************************************** PP

                 .....CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTHH CS
         ROK 191 .....kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgdkag 283
                      +++++++++i+++a++gd  a evve +++yl+kaia +inlf+pq+ivl+G+++ea+++l +ai+++++++++ +++++   +v+++  d+++
  EHU01494.1 286 ypsilTQAACQMQHICQAANQGDALACEVVEHVGRYLGKAIAIAINLFNPQKIVLAGEITEAERVLlPAIESCINTQALAAFRKNL--PVVRSQLDHRS 382
                 **************************************************************************************..9********** PP

                 HHHHHHHHCC CS
         ROK 284 llGaaaLake 293
                 ++Ga+aLak+
  EHU01494.1 383 AIGAFALAKR 392
                 ********97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.1e-10   9.2e-07      10      48 ..      25      63 ..      18      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.1e-10
                HHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                r++++qgp+s +++a+ +++ +++vt+++++L+++Gli+
  EHU01494.1 25 RLIDQQGPISRIQIADLSQLAPASVTKITRQLIERGLIK 63
                789**********************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   2.4e-07   0.00053       8      48 .]      23      63 ..      21      63 .. 0.96
   2 ?    0.1   0.0      0.28   6.3e+02      32      46 ..     272     286 ..     270     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.4e-07
      HTH_24  8 ILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +++l+ +++ is  ++A+ + l p+ v++  ++L+e GlIk
  EHU01494.1 23 VYRLIDQQGPISRIQIADLSQLAPASVTKITRQLIERGLIK 63
                5789************************************8 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
      HTH_24  32 stvnrrlkrLeeeGl 46 
                 s++  r+ +L ++G+
  EHU01494.1 272 SAIEHRVSELLNKGY 286
                 67889*********8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   3.8e-07   0.00086      22      56 ..      33      69 ..      21      76 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.8e-07
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE..ES CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverr..pg 56
                ++  ++a+  +l +++v++i + L ++GL+ ++   +
  EHU01494.1 33 ISRIQIADLSQLAPASVTKITRQLIERGLIKEVdqQA 69
                67779*************************9985533 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.1e-06    0.0025      21      53 ..      32      65 ..      14      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis.r 53
                p+++ ++A++  l + +v++i ++L ++gli+  
  EHU01494.1 32 PISRIQIADLSQLAPASVTKITRQLIERGLIKeV 65
                99*****************************953 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06    0.0044      12      54 ..      22      64 ..      21      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyvey 54
                    ++Y+l ++++++++ ++a   + +p+sV++  + L + G+++ 
      EHU01494.1 22 AVYRLIDQQGPISRIQIADLSQLAPASVTKITRQLIERGLIKE 64
                    79*************************************9875 PP

>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   7.9e-06     0.018      91     144 ..      26      83 ..      13      90 .. 0.74
   2 ?   -3.6   0.0       3.3   7.3e+03      62      86 ..     271     295 ..     268     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.9e-06
    SMC_ScpB  91 iIaykqpvtraeieeiRGvn...sdsvvrtLlerglieekgrkee.pgrpilYgtTek 144
                 +I  + p++r +i+++   +   ++++ r+L+ergli+e+ ++ +  gr ++  +Te+
  EHU01494.1  26 LIDQQGPISRIQIADLSQLApasVTKITRQLIERGLIKEVDQQAStGGRRAISIVTET 83 
                 577889****99987766443339999************9988762566666666665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.3
    SMC_ScpB  62 kpelaevvkklvkekkktrLsqaal 86 
                 ++++++ v++l+++  ++ L+qaa 
  EHU01494.1 271 NSAIEHRVSELLNKGYPSILTQAAC 295
                 5677788888999988999999986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.1e-05     0.092      18      50 ..      32      64 ..      18      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.1e-05
                S-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 18 eltlselArrtglpkStvhRlLqtLvelGyveq 50
                + +  ++A+ + l++++v  +++ L+e+G+++ 
  EHU01494.1 32 PISRIQIADLSQLAPASVTKITRQLIERGLIKE 64
                456669************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2839.90
//
Query:       EHU01495.1  [L=382]
Description: N-acetylglucosamine-6-phosphate deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-47  160.4   1.3    8.1e-47  160.2   1.3    1.0  1  Amidohydro_1  Amidohydrolase family
    5.8e-07   29.3   0.1    6.7e-06   25.8   0.0    2.3  3  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.2   1.3     9e-51   8.1e-47       1     344 []      50     379 ..      50     379 .. 0.93

  Alignments for each domain:
  == domain 1  score: 160.2 bits;  conditional E-value: 9e-51
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH........HHHHHHHHHHTSSSEEEEEEESSEGGSG CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst........giealleaaeelplglrilggkvsldrg 89 
                   i+ PG+ID+++ +++++++++      + + ++ e+le++ ++++ksG+t+++ + +t s+         ++a l+ + +++lgl+++g+++s++ +
    EHU01495.1  50 IIAPGFIDLQLNGCGGVQFND------DIDAISVETLETMHRANVKSGCTSFLPTLITSSDalmvraveTMRAFLQKYPHVMLGLHLEGPWLSVA-K 139
                   689******************......******************************9988****988888888888888***************.* PP

                   CCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC..... CS
  Amidohydro_1  90 saetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes..... 181
                   ++ + +a++++ +a++ ++++++ad++ kv+lap+   ++    +++++       + ++++a+++++++e+a+a+f+ +i+++thl++a+      
    EHU01495.1 140 KGTHNPALIREPDAQMVQFLCDNADVISKVTLAPEVVGSA---VIRQLS------EAGIVVSAGHSSATYEEAKAGFAAGITFATHLYNAMPafagr 227
                   ***********************************77666...799999......799*************************************** PP

                   ........HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSC........EEEEEECT..TSSCCGGHHHH CS
  Amidohydro_1 182 ........lglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvk........vglgtDga..asgnslnllee 260
                           ++++d+++ i+a+g h++ ++++  ++r+k++++++       +++ ++++  a+d+ ++         gl++D++   sg++l+++e 
    EHU01495.1 228 epgligalFDAPDVYCGIIADGLHVHYANVRN-AKRIKGDKLVL-------VTDATAPAGAAIDKFIFagktiyycNGLCVDEQgtLSGSALTMIEA 316
                   **************************775555.88889999995.......6666777777777666677778899999***8899*********** PP

                   HHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 261 lrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGklv 344
                   + + +          e++g+ l ealrma++++A+a+g++++ G+i++Gk A+l+v+           ++d++++k+ v+G+ v
    EHU01495.1 317 VQNCV----------EHAGIALDEALRMASLYPAQAMGVEKQSGTIQAGKLANLTVF-----------TRDFKIIKTLVNGDNV 379
                   *****..........9*****************************************...........*************876 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.039   3.5e+02       4      17 ..      45      58 ..      42      94 .. 0.88
   2 ?   -2.5   0.0       0.3   2.7e+03     333     374 ..     152     195 ..     146     195 .. 0.70
   3 !   25.8   0.0   7.5e-10   6.7e-06     406     448 ..     324     366 ..     306     372 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.039
  Amidohydro_3  4 DakGrlvlPGFvDs 17
                  D +G++ +PGF+D 
    EHU01495.1 45 DVSGAIIAPGFIDL 58
                  889**********5 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.3
  Amidohydro_3 333 gvqpvfnf..edelldsrlg.perargstpvkellnagvkvalgs 374
                   + q ++ f  ++  ++s++  ++ + gs+ ++ l +ag+ v++g+
    EHU01495.1 152 DAQ-MVQFlcDNADVISKVTlAPEVVGSAVIRQLSEAGIVVSAGH 195
                   555.33344644445555555999999999**********99986 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 7.5e-10
  Amidohydro_3 406 eelsleealalyTrgpAkalgledrkGtLevGadADlvvldad 448
                     + l eal++ +  pA+a+g e+  Gt+++G+ A+l+v+ +d
    EHU01495.1 324 AGIALDEALRMASLYPAQAMGVEKQSGTIQAGKLANLTVFTRD 366
                   567899**********************************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2957.50
//
Query:       EHU01496.1  [L=266]
Description: glucosamine-6-phosphate deaminase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-20   74.5   0.0    1.6e-20   74.0   0.0    1.2  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0     9e-25   1.6e-20       3     218 ..       9     230 ..       7     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 9e-25
                      HHHHHHHHHHHHHHHHHHHH.HHHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEES.S-TTSTT-HHHHHHHHTGGGS---G CS
  Glucosamine_iso   3 keelaealaarivealeeal.aergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERf.VpaddpdsNaklareallskvkipe 94 
                      ++++ + +a++iv+++++   ++++ + l l  G tp + y+ l + ++a+ ++++++v  f  DE + +p+++p+s +  ++++++++v+i++
       EHU01496.1   9 PTQVGKWAARHIVNRINAFNpSADKPFILGLPTGGTPLEAYKHLIDMHKAG-QVSFRHVITFNMDEYVgLPKEHPESYHSFMHRNFFDHVDIQP 101
                      6677788999******9998345677*******************988766.99************9879************************ PP

                      GGEE-S-TTSSTHHHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHH........CSSSSEEEESSBS.......TSSS-E CS
  Glucosamine_iso  95 anvhpikesaaeapeaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspele........etdrlvvavedsp.......kpppeR 173
                      +n+  ++ +a  + +a+ ++ye+++++     l ++ l + G+G+DGH+a   P s            ++d+ v+     +       + p+  
       EHU01496.1 102 ENINLLNGNAP-DIDAECRRYEDKIRS-----LGKIHLFMGGVGNDGHIAFNEPASSL-SsrtriktlTHDTRVANS---RffngdvdQVPKYA 185
                      ******97666.69************7.....45799************944444443.423444444222222222...1333444488899* PP

                      EEE-HHHHTTCSEEEEEEESHHHHHHHHHHHTT..TTTSGGGGH- CS
  Glucosamine_iso 174 itlTlpvlnsarevlflvaGeeKaealeevlsgedpeelPaalve 218
                      +t+ + +l +a+ev++lv+G+ Ka+al+++++g+ ++++ +++++
       EHU01496.1 186 LTVGVGTLLDAEEVMILVTGHVKAQALQAAVEGNVNHMWTISCLQ 230
                      ********************************9888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2179.47
//
Query:       EHU01497.1  [L=677]
Description: PTS system N-acetylglucosamine-specific IIABC components [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-76  255.6  33.8      1e-75  254.7  33.8    1.5  1  PTS_EIIC       Phosphotransferase system, EIIC
    1.9e-47  160.2   0.5      4e-47  159.1   0.5    1.6  1  PTS_EIIA_1     phosphoenolpyruvate-dependent sugar phosphotra
    9.8e-13   47.4   0.5      2e-12   46.3   0.5    1.6  1  PTS_EIIB       phosphotransferase system, EIIB
     0.0029   17.6   0.7        5.8    6.9   0.0    3.5  3  RnfC_N         RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
      0.013   15.7   0.1      0.041   14.1   0.1    1.9  1  Peptidase_M23  Peptidase family M23
        0.1   12.4   0.1        6.7    6.6   0.0    2.9  2  Biotin_lipoyl  Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.7  33.8   3.5e-79     1e-75       2     324 .]      10     322 ..       9     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 254.7 bits;  conditional E-value: 3.5e-79
    PTS_EIIC   2 dgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvll 100
                 +++m+p++ l+a++il+g+g+        ++++ +     + +a++l + g+a++ n+++lfaig+ayg++k+++g+a+l+g++g+l+++ l +  +++
  EHU01497.1  10 RALMVPVATLPAAAILMGIGY--------WIDP-DSWGAGNAFAALLIKSGGAIIENMSVLFAIGVAYGMSKDKDGAAALTGFVGFLVVTTLCSPAAVA 99 
                 79*******************........4444.23355677999**********************************************99999999 PP

    PTS_EIIC 101 laagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsg 199
                 +++++     a +++++ + ++ f++i+vg+l+a++yn+f+    ++LP+++ ff+g r+vpi+ ++  +++v+++l++iwp+i++gl+++g+ ++  g
  EHU01497.1 100 MIQKI---PVADVPAAFGKISNQFVGILVGVLSAEVYNRFSH---VELPKAFSFFSGRRLVPILVSF-LMILVAFILMYIWPVIFNGLVSFGEHIQKLG 191
                 99999...699*******************************...**********************.99999*******************6655555 PP

    PTS_EIIC 200 sllgvlifgflerllipfGlHhafiapfwftsa.........ggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllg 289
                   +g+++++f++rllip+GlHha++ +fwf++a         gg+   an +++     ++++ +g+f+ +mfG+pga+la+y++a +e++ k+ ++++
  EHU01497.1 192 -SVGAGVYAFFNRLLIPVGLHHALNSVFWFDVAgindipkflGGAQSLANGTAIPG--ITGRYQAGFFPIMMFGLPGAALAIYHCARPENRAKVGGIML 287
                 .48******************************77766555555555555555554..599************************************** PP

    PTS_EIIC 290 saaltpflfGItepleFgfpfvlnlllfipallag 324
                 +aa+++f++GItepleF+f+fv+++l++i+a+l+g
  EHU01497.1 288 AAAFAAFFTGITEPLEFSFMFVAPVLYVIHAVLTG 322
                 *********************************98 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.5   1.3e-50     4e-47       2     126 ..     529     653 ..     528     654 .. 0.98

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 1.3e-50
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 ++++pvsGev++l+ vpDe+fa+k++GdGvai+ps+++vvapv+G+v+k+f+t+Ha+++++++gve+++h+G+dtv l+g+gF+ lv++g +V+ag+++
  EHU01497.1 529 TLMAPVSGEVIALDAVPDEAFASKAVGDGVAIKPSDKRVVAPVAGTVVKIFNTNHAFCLESENGVEIVVHMGLDTVALDGQGFTRLVEDGAQVTAGQPV 627
                 689************************************************************************************************ PP

                 EEE-HHHHGGGSS---EEEEESSGGG CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnsee 126
                 +e+dl+++++++ s+++pvvv+n e+
  EHU01497.1 628 LEMDLDYLNAHARSMISPVVVSNIED 653
                 **********************9765 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.5   6.8e-16     2e-12       2      34 .]     422     454 ..     421     454 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 6.8e-16
                 HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB   2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34 
                 +++ a+GG dN++ +++C+TRLRl++kDa +v+
  EHU01497.1 422 RYIGAVGGSDNLTAIDACITRLRLNVKDAGQVN 454
                 5788****************************8 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0019       5.8      56      86 ..     517     547 ..     512     565 .. 0.75
   2 ?    3.5   0.1     0.023        68      68      86 ..     566     584 ..     553     599 .. 0.77
   3 ?    3.4   0.0     0.025        73      42      78 ..     611     648 ..     605     658 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0019
      RnfC_N  56 qkiaeaegfvsapvhasvsGtVkaiekrlva 86 
                 q + ++e+ v a   a+vsG+V+a++ ++  
  EHU01497.1 517 QAVLNSEKRVIATLMAPVSGEVIALDAVPDE 547
                 77778888889*************9987654 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.023
      RnfC_N  68 pvhasvsGtVkaiekrlva 86 
                  v a+v+GtV++i + ++a
  EHU01497.1 566 RVVAPVAGTVVKIFNTNHA 584
                 699**********877665 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.025
      RnfC_N  42 akplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVk 78 
                  + lv+ g +V+ Gq + e +  ++ a+  + +s  V+
  EHU01497.1 611 FTRLVEDGAQVTAGQPVLEMDLdYLNAHARSMISPVVV 648
                 5679*************999966878887777776654 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.4e-05     0.041       5      71 ..     557     629 ..     553     640 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                    SEEEEETTT-EEEESSSEEEEEEEEET.....TTEEEEEEEECTCEEEEEEEESEES..S-TTEEE-TTCEEEE CS
  Peptidase_M23   5 GidiaapkgtpVlAaadGtVvfagkke.....gyGnvviidhgdgystlyahlskis..vkegqkVkaGqvIGt 71 
                    G+ i+ +  + V+A+ +GtVv++ +++     +  n v i    g+ t+ +  + ++  v+ g +V aGq++ +
     EHU01497.1 557 GVAIKPS-DKRVVAPVAGTVVKIFNTNhafclESENGVEIVVHMGLDTVALDGQGFTrlVEDGAQVTAGQPVLE 629
                    7777777.678*********999885557888889999999999999999999998788***********9855 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.053   1.6e+02      44      59 ..     566     581 ..     555     585 .. 0.87
   2 ?    6.6   0.0    0.0023       6.7      19      39 ..     613     633 ..     603     648 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.053
                    EEEBSSSEEEEEESST CS
  Biotin_lipoyl  44 eieapkaGvvkeilvk 59 
                     + ap+aG+v++i   
     EHU01497.1 566 RVVAPVAGTVVKIFNT 581
                    689*********9865 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0023
                    ESSSTTCEE-TTSEEEEEECT CS
  Biotin_lipoyl  19 vlvkvGdkVkagqvlaeveam 39 
                     lv++G +V+agq+++e+  +
     EHU01497.1 613 RLVEDGAQVTAGQPVLEMDLD 633
                    589*************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:01.35
# Mc/sec: 1517.89
//
Query:       EHU01498.1  [L=555]
Description: glutamyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-126  422.0   0.0   1.3e-126  421.7   0.0    1.1  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    2.8e-62  209.7   0.0    7.7e-62  208.2   0.0    1.7  2  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.7   0.0  1.5e-130  1.3e-126       2     313 ..      28     337 ..      27     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: 421.7 bits;  conditional E-value: 1.5e-130
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   V+tRf+PeP+GyLHiGhak+++ln+++A++++G+++lR++DT+p +e+ e++esi++d++wlg++w+ +++y+sd+fd+l++ya+eLi+kG+AYv+e
    EHU01498.1  28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGECNLRFDDTNPVKEDMEFVESIKRDVQWLGFTWSGEVRYSSDYFDQLYHYAVELINKGLAYVDE 124
                   9************************************************************************************************ PP

                   STHHHHHHHHCCSS..HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHH CS
  tRNA-synt_1c  99 ctkeeleeereeqe..klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfavv 192
                    t++e++e+r++ +   ++s++rdr++eenl+lf e+m++g+++++ka++R+kid++ss +++rD+v +rik+++   h+++++k++iyP+Ydf+++
    EHU01498.1 125 LTPDEIREYRGTLTapGKNSPYRDRSVEENLALF-EKMRNGEFAEGKACLRAKIDMASSfIVMRDPVLYRIKFAE---HHQTGNKWCIYPMYDFTHC 217
                   ************99888999**************.9***************************************...******************* PP

                   HHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHH CS
  tRNA-synt_1c 193 idDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftre 289
                   i+Dale+ith+l+t ef+dn++ y+w+l++++++v+p ++e++rlnle+ ++SKRkl++lv ek+v++wdd+r+ ++++lrr+G+t++++re+++r+
    EHU01498.1 218 ISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYAVMSKRKLTQLVSEKHVEGWDDPRMLTVSGLRRRGYTAASIREFCRRI 314
                   ************************************************************************************************* PP

                   CCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 290 eliksfdlnresksleafdrkkLe 313
                   +++k++ + +e+ sle++ r++L+
    EHU01498.1 315 GITKQD-NIVEMASLESCIRDDLN 337
                   ******.8899**********998 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.42   3.8e+03     107     128 ..     241     264 ..     218     303 .. 0.57
   2 !  208.2   0.0   8.6e-66   7.7e-62       1     174 []     340     529 ..     340     529 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.42
  tRNA-synt_1c_C 107 ihWvsaeeaveaevrlYd..rLfk 128
                       Wv ++  ++++ r Y+  rL  
      EHU01498.1 241 YDWVLDNITIPVHPRQYEfsRLNL 264
                     556666555555444433114433 PP

  == domain 2  score: 208.2 bits;  conditional E-value: 8.6e-66
  tRNA-synt_1c_C   1 ApRymaVldpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD........akrlkpgeevrLkelynikveevekdesgevte 87 
                     ApR+maVldpvk+++enlp+g++e+l++p+hp++pe+gtr+vpfs+ei+i+r+D        +krl  g+evrL+++y+i++e+  kde+g++t 
      EHU01498.1 340 APRAMAVLDPVKIVLENLPAGHNEVLSMPNHPNKPEMGTRDVPFSREIWIDRADfreeankqYKRLVLGKEVRLRNAYVIRAERTAKDEEGNITC 434
                     8********************************************************************************************** PP

  tRNA-synt_1c_C  88 lkleydgesleea....rkkkgiihWvsaeeaveaevrlYdrLfkeee.de..dfl..lnpdslkvleeglaepalanlkkgdivQfeRiGyfrv 173
                     +++++d ++l+++    rk+kg+ihWvsae+a++ae+rlYdrLf++++  +  dfl  +npdsl + ++g++ep l+++++   +QfeR+Gyf++
      EHU01498.1 435 IYCTCDVDTLSKDpadgRKVKGVIHWVSAEHALPAEFRLYDRLFSVPNpGAadDFLttINPDSLAI-KHGFVEPGLRDAEASAPYQFEREGYFCA 528
                     **********999********************************9887667677799******85.9**************************9 PP

  tRNA-synt_1c_C 174 d 174
                     d
      EHU01498.1 529 D 529
                     8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3950.15
//
Query:       EHU01499.1  [L=149]
Description: hypothetical protein CKS_3758 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1103.90
//
Query:       EHU01500.1  [L=147]
Description: DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-47  159.5   0.3    3.9e-47  159.3   0.3    1.0  1  FUR       Ferric uptake regulator family
     0.0064   16.4   0.0      0.013   15.5   0.0    1.5  1  HTH_12    Ribonuclease R winged-helix domain
       0.01   15.8   0.0      0.019   14.9   0.0    1.5  1  PadR      Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.013   15.5   3.7        0.7   10.1   0.3    2.5  2  SR1P      SR1 protein
       0.71   10.2   3.9       0.82   10.0   3.2    1.6  1  DUF3399   Domain of unknown function (DUF3399)


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.3   1.1e-50   3.9e-47       1     120 []      10     130 ..      10     130 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 1.1e-50
                 HTTHCHHHHHHHHHHHHHHHSS.SBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHH CS
         FUR   1 eaglklTkqRekilevleksee.hlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeie 98 
                 +aglk+T +R+kilevl++    h+sae++yk+l + ++ei+laTVYr+L+++++ag+v++++fe+g+s++el++++hhdhlic +Cgkvief+d++ie
  EHU01500.1  10 KAGLKVTLPRLKILEVLQEPAChHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEFSDESIE 108
                 689*****************999**************************************************************************** PP

                 HHHHHHHHHTT-EEEEEEEEEE CS
         FUR  99 kiqeeiaekegfklvshrlely 120
                  +q++ia+++g+kl++h+l+ly
  EHU01500.1 109 TRQRDIATRHGIKLTNHSLYLY 130
                 *******************997 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.5e-06     0.013       2      55 ..      21      75 ..      20      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.5e-06
      HTH_12  2 eILkilae.sdkpigakeiaeeLkkrgydigeravRyrLrkleergltrrvgyag 55
                +IL++l+e + + ++a+ + + L + g++ig  +v + L   ++ g++ r+   g
  EHU01500.1 21 KILEVLQEpACHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75
                6999999944578*********************************888876653 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.4e-06     0.019      14      68 ..      38      85 ..      22      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.4e-06
                HHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHC CS
        PadR 14 eiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTda 68
                ++ k+l +   g +e+  +++Y++L+++ + g+v++++ e    + + +++lT++
  EHU01500.1 38 DLYKRLIDM--G-EEIGLATVYRVLNQFDDAGIVTRHNFE----GGKSVFELTQQ 85
                567777777..7.899********************9886....57899999987 PP

>> SR1P  SR1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0032        11       5      21 ..      92     107 ..      90     109 .. 0.80
   2 ?   10.1   0.3   0.00019       0.7      23      37 .]     128     142 ..     123     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0032
        SR1P   5 vCqtCnatIdhfedekV 21 
                 +C +C+++I+ f de++
  EHU01500.1  92 ICLDCGKVIE-FSDESI 107
                 9********8.666666 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
        SR1P  23 tLYgtCnqceCkkae 37 
                  LYg C  ++C+++e
  EHU01500.1 128 YLYGHCALGDCHEDE 142
                 59**********986 PP

>> DUF3399  Domain of unknown function (DUF3399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2   0.00023      0.82      27      56 ..      77     107 ..      59     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00023
     DUF3399  27 kstsllEsqHHH.LLhCLEKttnheFvdEqt 56 
                 ks   l +qHHH  L CL+     eF dE++
  EHU01500.1  77 KSVFELTQQHHHdHLICLDCGKVIEFSDESI 107
                 3444455899996699************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1209.77
//
Query:       EHU01501.1  [L=176]
Description: flavodoxin 1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-31  109.7   0.1    1.5e-31  109.5   0.1    1.0  1  Flavodoxin_1  Flavodoxin
    4.8e-11   42.6   0.0    5.7e-11   42.4   0.0    1.2  1  Flavodoxin_3  Flavodoxin domain
      8e-07   29.4   0.0    1.2e-06   28.8   0.0    1.3  1  Flavodoxin_5  Flavodoxin domain
  ------ inclusion threshold ------
      0.054   13.2   0.0       0.64    9.8   0.0    2.6  1  FMN_red       NADPH-dependent FMN reductase
      0.058   13.1   0.1       0.16   11.7   0.0    1.6  2  Flavodoxin_4  Flavodoxin


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.1   4.2e-35   1.5e-31       1     143 []       6     160 ..       6     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 4.2e-35
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i++gS+tGnte++Ak ++++lg +++ a+v+++++    ++++e+ ++ll++++T++ G+++       +d+ +++ ++le++d++g+ +a+fg+Gd
    EHU01501.1   6 IFFGSDTGNTENIAKMIQKQLG-KDV-AEVHDIAKST--KEDLEAFDILLLGIPTWYYGEAQ-------CDWDDFF-PTLEEIDFNGKLVALFGCGD 90 
                   8*********************.565.5777777777..68*********************.......*******.99****************** PP

                   TTSSS..TTHHHHHHHHHHHHTTCEEES.....................SSEEEETTST.HGHHHHHHHH CS
  Flavodoxin_1  98 sayen..FcaagkkldekleelGaerll.....................kllegdednq.egqeeafrkW 143
                   ++ +   Fc+a++++ +++e  Ga +++                      +l++ded+q e++ e+++kW
    EHU01501.1  91 QEDYAeyFCDAMGTIRDIIEPNGAIIVGhwptegyhfeaskgladdnhfLGLAIDEDRQpELTNERVDKW 160
                   *************************************************88******************* PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.6e-14   5.7e-11       2     111 ..       6     124 ..       5     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.6e-14
  Flavodoxin_3   2 ilysSltGNTkkvAeaikealee.ekeivsikeakek.veeadvvfvGfwv.dkgtadeealkfletlk.....nkkillfgTlGagkdseyakkil 90 
                   i++ S tGNT+++A+ i+++l +   e+++i++ +++ +e++d++++G+ + + g+a+ +  +f  tl+     +k ++lfg    ++  ey+ + +
    EHU01501.1   6 IFFGSDTGNTENIAKMIQKQLGKdVAEVHDIAKSTKEdLEAFDILLLGIPTwYYGEAQCDWDDFFPTLEeidfnGKLVALFGCGDQEDYAEYFCDAM 102
                   899*******************98899999988887779*********85535688888888887776433343899****999999999******* PP

  Flavodoxin_3  91 ekvkallekn.nevlgeflcqG 111
                     ++ ++e n   ++g++ + G
    EHU01501.1 103 GTIRDIIEPNgAIIVGHWPTEG 124
                   *********9778888887777 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.3e-10   1.2e-06       2      84 ..       6      89 ..       5     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.3e-10
  Flavodoxin_5  2 ilYsSrdGqTkkiaeriaeelree.gelvdvedvekesedlesydavvigasv.yygkllpelakFvekh.reaLstkpvalfsvs 84
                  i++ S +G+T+ ia+ i+++l++  +e+ d+++    +edle +d  ++g +  yyg+ +++ ++F  +  + + + k valf ++
    EHU01501.1  6 IFFGSDTGNTENIAKMIQKQLGKDvAEVHDIAKS--TKEDLEAFDILLLGIPTwYYGEAQCDWDDFFPTLeEIDFNGKLVALFGCG 89
                  89********************884444455554..788************99789********9987753778999999999875 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00018      0.64       3      35 ..       3      68 ..       1     119 [. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
                EEEE.ES--STT-HHHHHHHHHHCCT-T.T-CE..................................E CS
     FMN_red  3 ilvi.sGSlrkgsntrklaewaaealkeagaev..................................e 35
                i++i +GS    +nt+ +a++++++l ++ aev                                  +
  EHU01501.1  3 IVGIfFGSDT--GNTENIAKMIQKQLGKDVAEVhdiakstkedleafdilllgiptwyygeaqcdwdD 68
                5666588874..99999999999999888888866666666666666666666666666666666663 PP

>> Flavodoxin_4  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14   5.2e+02       8      44 ..      10      46 ..       3      49 .. 0.80
   2 ?   11.7   0.0   4.5e-05      0.16      71     113 ..      44      90 ..      36     122 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
                  -SSSHHHHHHHHHHHHHT-EEEE--BSS---TGGG-T CS
  Flavodoxin_4  8 scsgvtkavaeklaaitgadlyeikpevpyteadldw 44
                  s +g t+ +a+ +    g d+ e++     t+ dl+ 
    EHU01501.1 10 SDTGNTENIAKMIQKQLGKDVAEVHDIAKSTKEDLEA 46
                  5678999999999999999999999999899888875 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.5e-05
                   GGG-SEEEEEEE-BTTB--.HHHHHH...HHTS--TT-EEEEEEE-S CS
  Flavodoxin_4  71 pekyevlfvgfpvwwyiap.tiintf...lesydfagkivvpfatsg 113
                    e +++l++g+p w+y       + f   le  df gk+v  f    
    EHU01501.1  44 LEAFDILLLGIPTWYYGEAqCDWDDFfptLEEIDFNGKLVALFGCGD 90 
                   5889************7541445555355899********9997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1345.72
//
Query:       EHU01502.1  [L=91]
Description: LexA regulated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   31.6   0.7    1.9e-07   30.7   0.7    1.5  1  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.7   1.1e-11   1.9e-07       1      38 [.      52      89 ..      52      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.1e-11
                EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH CS
       RHH_1  1 rvsirldeellerLdelarrrgrSrSelIReAlreyle 38
                rv++++ ++ +e+L+ la+ r+ SrSelI+++l++ l+
  EHU01502.1 52 RVELKMNSQAVEALNTLAEQRNLSRSELIEQMLLAQLK 89
                8999*****************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 779.73
//
Query:       EHU01503.1  [L=254]
Description: esterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.6   0.2    7.2e-20   71.7   0.2    2.1  1  Abhydrolase_1    alpha/beta hydrolase fold
    3.1e-18   67.2   3.5    3.6e-18   67.0   3.5    1.0  1  Abhydrolase_6    Alpha/beta hydrolase family
    1.7e-11   44.3   0.0    3.7e-07   30.1   0.0    2.1  2  PGAP1            PGAP1-like protein
    3.9e-08   32.9   0.1    2.5e-06   26.9   0.1    2.1  2  Hydrolase_4      Serine aminopeptidase, S33
    9.7e-06   25.9   0.0    1.2e-05   25.6   0.0    1.2  1  Thioesterase     Thioesterase domain
    0.00024   20.7   0.1    0.00056   19.5   0.1    1.5  1  DUF676           Putative serine esterase (DUF676)
     0.0018   18.1   0.1      0.004   16.9   0.0    1.6  2  Abhydrolase_5    Alpha/beta hydrolase family
     0.0044   16.4   0.0       0.13   11.6   0.0    2.1  2  DUF915           Alpha/beta hydrolase of unknown function (DU
     0.0075   15.9   0.0     0.0084   15.8   0.0    1.2  1  Esterase         Putative esterase
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.027   14.3   0.0    1.5  1  Abhydrolase_3    alpha/beta hydrolase fold
      0.016   14.2   0.0      0.023   13.6   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
      0.023   13.7   0.0      0.034   13.2   0.0    1.2  1  Chlorophyllase   Chlorophyllase
      0.035   12.8   0.0       0.05   12.3   0.0    1.2  1  AXE1             Acetyl xylan esterase (AXE1)
      0.039   12.7   0.0        2.3    6.8   0.0    2.1  2  Ndr              Ndr family
      0.061   12.9   0.0       0.16   11.5   0.0    1.7  2  DLH              Dienelactone hydrolase family
      0.069   13.0   0.0      0.099   12.5   0.0    1.3  1  Lipase_3         Lipase (class 3)
       0.12   11.9   0.1       0.41   10.1   0.0    1.8  2  LIDHydrolase     Lipid-droplet associated hydrolase
       0.14   11.7   0.0        0.2   11.2   0.0    1.2  1  DUF2974          Protein of unknown function (DUF2974)
       0.14   12.0   0.0       0.19   11.6   0.0    1.3  1  BAAT_C           BAAT / Acyl-CoA thioester hydrolase C termin
       0.15   11.5   0.1       0.27   10.7   0.1    1.4  1  DUF900           Alpha/beta hydrolase of unknown function (DU
       0.18   11.4   0.0       0.38   10.4   0.0    1.5  1  Abhydro_lipase   Partial alpha/beta-hydrolase lipase region
       0.19   10.8   0.0       0.28   10.2   0.0    1.3  1  DUF1057          Alpha/beta hydrolase of unknown function (DU


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.2   8.9e-23   7.2e-20       2     257 .]      18     241 ..      17     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 8.9e-23
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +++++hGl gs+d+     la++L + ++ +i +D+r++g S++a +    +y+   +a d+   lda g+++l ++GhSmGG ia+++ a++per
     EHU01503.1  18 PVLLIHGLFGSLDNLGV--LARGLKD-DHPLIQVDVRNHGLSPRADE---MTYQV--MAQDMLDTLDAQGIERLSVIGHSMGGKIAMTMSALAPER 105
                    8************9888..9999987.***************99998...67888..9************************************** PP

                    EEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwp 193
                    +  +v+++            ++q  ++ + f  ++a+    ++ ++ a e   l+++ + v      ++  +  ssg ++++ +a ++ ++  +  
     EHU01503.1 106 IEQMVMIDI--------APVDYQTRRHDEIFAAIRAVTDAGVTLRSEAAEIMRLHLNEEGV-----IQFILKSFSSGEWRFNVPALWDNYAYITGW 188
                    *********........9999************************************9999.....677777777777888888888876555555 PP

                    HCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 194 ttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                    +t  a              p+l+i g + p+ ++++ + + q++p ++ +vi +agH+++ e+p
     EHU01503.1 189 ETVPAWPH-----------PALFIRGGDSPYLDNQYRDAILQQFPAAQAHVIGGAGHWVHAEKP 241
                    55554444...........****************************************99876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   3.5   4.4e-21   3.6e-18       1     218 [.      19     245 ..      19     247 .. 0.65

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 4.4e-21
                    EEEE--GC.....GC..HHHHHHHHCCTCEEEEE--TTST...S-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....E CS
  Abhydrolase_6   1 vlllHGagssassWl..vapLaallaagvhvlapDlpGhG...rsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla..lvv 89 
                    vll+HG+++s    l   + La+ l +++  + +D ++hG   r+d + + + + +d +++ld+ +    +  ++GHS+GG +a+   +la  + +
     EHU01503.1  19 VLLIHGLFGS----LdnLGVLARGLKDDHPLIQVDVRNHGlspRADEMTYQVMA-QDMLDTLDAQG--IERLSVIGHSMGGKIAMTMSALApeR-I 106
                    89****5542....2235677888888855567******953333444455544.88899999995..9999**************88888742.3 PP

                    E..EEES-..----TTTS----TTHHHHHHTT-C........CCCH.CCH.....S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT- CS
  Abhydrolase_6  90 g..vlldppptalpagllaaalelllallallrl........lawl.sre.....plprlfladedadaawrarlarlaallaglgllpaaawadl 169
                       v++d  p+ + ++  + +++ ++a++++ ++         +++ ++e     +l  +f +      +wr ++ +l +  a+        w+++
     EHU01503.1 107 EqmVMIDIAPVDYQTRRHDEIFAAIRAVTDAGVTlrseaaeiMRLHlNEEgviqfILK-SFSS-----GEWRFNVPALWDNYAYIT-----GWETV 191
                    3677777744333333344444444444442222222333442222222256664444.8888.....999999988887777666.....66666 PP

                    TTGC...EEE.CTT-C.HHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 170 pvpl...lvl.ggeDp.lvprllerlla.qagarlpvvlpgaGHlphleepdeva 218
                    p++    l + gg+ p l  ++ +++l+  + a+  +v+ gaGH++h e+pd+v 
     EHU01503.1 192 PAWPhpaLFIrGGDSPyLDNQYRDAILQqFPAAQA-HVIGGAGHWVHAEKPDAVL 245
                    66665557777888884444555566669999999.****************995 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00012       0.1       4      33 ..      16      45 ..      13      76 .. 0.79
   2 !   30.1   0.0   4.5e-10   3.7e-07      87     146 ..      77     130 ..      63     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
       PGAP1  4 GipVlFvpGnagsykqvrslAseaaeayqe 33
                  pVl+++G++gs++++  lA+  ++++  
  EHU01503.1 16 STPVLLIHGLFGSLDNLGVLARGLKDDHPL 45
                68*******************999777755 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 4.5e-10
       PGAP1  87 ekeptsviliGHSmGGivaraaltlknyikqsvntiltla.sPhalpplsfdkdilklyer 146
                  + ++++ +iGHSmGG++a   +t+ +++++ +++++ ++ +P++++  ++d+      ++
  EHU01503.1  77 AQGIERLSVIGHSMGGKIA---MTMSALAPERIEQMVMIDiAPVDYQTRRHDEIF----AA 130
                 56788999***********...88888999**********9**********9433....33 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   3.1e-09   2.5e-06       7     106 ..      19     111 ..      13     150 .. 0.86
   2 ?    4.2   0.0     0.028        23     184     238 ..     188     240 ..     177     241 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.1e-09
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagl 104
                  v+l+HGl  + +    la+ L + +   + +D r hG s   r++   ++ + +D+   +      ++ ++l ++GhSmGG ia+++ +  p++++ +
   EHU01503.1  19 VLLIHGLFGSLDNLGVLARGLKD-DHPLIQVDVRNHGLS--PRADEMTYQVMAQDMLDTL---D-AQGIERLSVIGHSMGGKIAMTMSALAPERIEQM 109
                  89999*99999999999999976.678899*********..8999999*****9996655...4.455777**********************99988 PP

  Hydrolase_4 105 il 106
                  ++
   EHU01503.1 110 VM 111
                  76 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.028
  Hydrolase_4 184 eeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                  +e ++++  P l++ G++ +  d++ + +++++ ++   + +++ g+ H ++ E+
   EHU01503.1 188 WETVPAWPHPALFIRGGDSPYLDNQYRDAILQQFPA--AQAHVIGGAGHWVHAEK 240
                  566778889**************************5..999********999996 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-08   1.2e-05       2     228 ..      18     249 ..      17     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.5e-08
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEE CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre.rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavksl 97 
                   p+ l ++ +Gs      la+ l+d+   ++ v  + ++ ++ +   + + +a+ ++++l ++  e  + ++GhS+Gg +A+ +++   ++   +  +
    EHU01503.1  18 PVLLIHGLFGSLDNLGVLARGLKDD-HPLIQVDVRNHGlSPRADEMTYQVMAQDMLDTLDAQGIE-RLSVIGHSMGGKIAMTMSALAPER---IEQM 109
                   6778888889999999999999998.777777777777777888888999*********999888.9*****************998876...6678 PP

                   EEESCCCCCCHHCHHCCCHTTHHT...............HHHHHCCTTHH..HCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEE CS
  Thioesterase  98 flidssapseteaqeasrraedee...............fveeltdlggt..epeelledeellsellpalradyraleqyslrpeaaqklratlfn 177
                   ++id  +   + ++ ++  a+ ++               ++ +l+++g +    +++   e  ++  +pal + y  ++ ++ +p      +a +  
    EHU01503.1 110 VMIDIAPVDYQTRRHDEIFAAIRAvtdagvtlrseaaeiMRLHLNEEGVIqfILKSFSSGE--WRFNVPALWDNYAYITGWETVPAWPH--PALFIR 202
                   9999777666666666666666666777788888777777777777777775566666666..78888888888888888886666555..678888 PP

                   EGSS-CTCCCCCCCHCHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHH CS
  Thioesterase 178 gsddklkdldtlelaerweqktsgevsvhvlegdhfylledrleavleiie 228
                   g d+++ d+++  +++   q+ + +  + +  ++h    e +++avl+ i 
    EHU01503.1 203 GGDSPYLDNQY--RDA-ILQQFPAAQAHVIGGAGHWVHAE-KPDAVLRSIR 249
                   88888888884..555.66777766666666666666665.7777777665 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   6.9e-07   0.00056       8     117 ..      19     117 ..      13     123 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 6.9e-07
      DUF676   8 vVlvHGlqgnsaDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraaiaklkekemt 106
                 v l+HGl+g+ ++l +++  l+      +++ i +   +   s   +  ++  + +a+  l++++++  +  ++S++ghS+Gg ia  + a++ e+ ++
  EHU01503.1  19 VLLIHGLFGSLDNLGVLARGLKD-----DHPLIQVDVRNHGLSPRAD--EMTYQVMAQDMLDTLDAQGIE--RLSVIGHSMGGKIAMTMSALAPERIEQ 108
                 78999999999999999999999.....3344544444333333333..333355678889999988877..*************99888877766542 PP

      DUF676 107 lkeaikglepv 117
                    ++ ++ pv
  EHU01503.1 109 --MVMIDIAPV 117
                 ..344555555 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.9e-06     0.004      52     119 ..      76     144 ..      62     160 .. 0.76
   2 ?   -2.7   0.0       5.3   4.3e+03      47      63 ..     215     231 ..     209     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.9e-06
  Abhydrolase_5  52 eapklekfvvgGhslGGvvasrfaa.eeekiegvvflasYPekdelselskkvlsivgteDgvlnvksl 119
                    +a+++e++ v Ghs+GG +a  ++a   e+ie +v++   P + +  ++     +i + +D+ ++ +s 
     EHU01503.1  76 DAQGIERLSVIGHSMGGKIAMTMSAlAPERIEQMVMIDIAPVDYQTRRHDEIFAAIRAVTDAGVTLRSE 144
                    356799************99998773559************8666666666677888888887776654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.3
  Abhydrolase_5  47 eeiikeapklekfvvgG 63 
                    + i+++ p  + +v+gG
     EHU01503.1 215 DAILQQFPAAQAHVIGG 231
                    56888999999999998 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.036        30       4      35 ..       9      40 ..       6      54 .. 0.79
   2 !   11.6   0.0   0.00016      0.13      66     117 ..      42      95 ..      39     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.036
      DUF915  4 lksekkkeiPtifihGyggtaeslnemvkqle 35
                +++ + +++P+++ihG  g+   l+ +++ l+
  EHU01503.1  9 TEQSSADSTPVLLIHGLFGSLDNLGVLARGLK 40
                67788899***********9999998888875 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
      DUF915  66 knPiikvgfednrd...aslkkqakwlkkvlseLkkkYnikkfnavGhSmGglal 117
                  +P+i+v + +      a+  +++   + +l+ L  + +i+++ ++GhSmGg  +
  EHU01503.1  42 DHPLIQVDVRNHGLsprADEMTYQVMAQDMLDTLDAQ-GIERLSVIGHSMGGKIA 95 
                 6788888887765433355556666677777777766.9*************766 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     1e-05    0.0084      96     141 ..      65     107 ..      42     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
                 HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCC CS
    Esterase  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFg 141
                 + ++q +l++lda+   +    +v+G+SmGG +A+++ + +p+r  
  EHU01503.1  65 QVMAQDMLDTLDAQGIERL---SVIGHSMGGKIAMTMSALAPERIE 107
                 5677888888888776555...5**************999999865 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.3e-05     0.027      70     146 ..      80     154 ..      56     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
                    TCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHSS CS
  Abhydrolase_3  70 psrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesikkaeel.adgplltraaldlfwrlylp 146
                     +r+ + G S GG++a+ ++  a ++  ++   ++ i Pv    + ++++i  a ++ +d+ +  r++ ++++rl l+
     EHU01503.1  80 IERLSVIGHSMGGKIAMTMSALAPER--IEQMVMIDIAPVDYQ-TRRHDEIFAAIRAvTDAGVTLRSEAAEIMRLHLN 154
                    4799****************999998..566777778898644.4445555555555355555446666677777665 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-05     0.023      89     133 ..      80     123 ..      63     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
  Chlorophyllase2  89 lsklalsgHSrGgktafalalgkaktslkfsaligvdPvagasks 133
                      +++l++ gHS Ggk+a+ +     + +++   +i + Pv+++++ 
       EHU01503.1  80 IERLSVIGHSMGGKIAMTMSALAPE-RIEQMVMIDIAPVDYQTRR 123
                      789**************99765555.57888899999***97743 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-05     0.034     108     160 ..      69     121 ..      60     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
  Chlorophyllase 108 kavlptsveanlsklalvGhsrGGktafalalgysseltfsaliGvdPvaGts 160
                     + +l+t     +++l+++Ghs GGk a++++      ++   +i + Pv+ ++
      EHU01503.1  69 QDMLDTLDAQGIERLSVIGHSMGGKIAMTMSALAPERIEQMVMIDIAPVDYQT 121
                     4556666666789****************99888889999999*****99665 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.2e-05      0.05     160     197 ..      67     104 ..      60     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
                 HHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS CS
        AXE1 160 rlveivaslpevDeeRvavlGasqGGalalavaalekr 197
                  + +++  l+    eR++v+G+s GG +a++++al ++
  EHU01503.1  67 MAQDMLDTLDAQGIERLSVIGHSMGGKIAMTMSALAPE 104
                 556677777888889********************874 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0029       2.3      81     134 ..      63     116 ..      53     124 .. 0.91
   2 ?    3.7   0.0     0.025        21     221     276 ..     197     252 ..     182     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                 -HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--- CS
         Ndr  81 slddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinits 134
                 + + +a+++l  ld   ++ +  +G   G  i +  ++  per+e +v+i+i +
  EHU01503.1  63 TYQVMAQDMLDTLDAQGIERLSVIGHSMGGKIAMTMSALAPERIEQMVMIDIAP 116
                 556789999999**************************************9987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.025
                 -EEEEEETTSTTHHHHHHHHHHS-TTTEEEEEETT-TT-HHHH-HHHHHHHHHHHH CS
         Ndr 221 kvllvvGdkspfvdevvevnskldkkkttllkvadsgglvleeqPdklaeslklfl 276
                 ++l + G  sp++d+ ++ +   +   ++   +  +g  v +e+Pd++++s+  f+
  EHU01503.1 197 PALFIRGGDSPYLDNQYRDAILQQFPAAQAHVIGGAGHWVHAEKPDAVLRSIRRFF 252
                 678888999999999887544333344455567889999*************9886 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.16      84     120 ..      67     103 ..      34     112 .. 0.79
   2 ?   -2.4   0.0       3.5   2.9e+03     145     181 ..     196     228 ..     189     242 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
         DLH  84 aavaylksvpevstkkvgvvGfCmGGalalllaaevp 120
                 +a ++l +   +  +++ v+G  mGG++a+ ++a  p
  EHU01503.1  67 MAQDMLDTLDAQGIERLSVIGHSMGGKIAMTMSALAP 103
                 566667777777799*****************99873 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
         DLH 145 apilalfgeeDefipadevekleealkaanvdlelkv 181
                 +p l++ g+  +  +++ ++ + +++ aa+     +v
  EHU01503.1 196 HPALFIRGGDSPYLDNQYRDAILQQFPAAQ----AHV 228
                 677777787777777777777777774444....444 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012     0.099      45      84 ..      61     100 ..       6     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                 S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHH CS
    Lipase_3  45 eslreqvlkelkrllekypeysivvtGHSLGgalAlLaal 84 
                 e +++ + +++ + l+++   ++ v GHS+Gg +A+ +++
  EHU01503.1  61 EMTYQVMAQDMLDTLDAQGIERLSVIGHSMGGKIAMTMSA 100
                 467788888999999999999*************986665 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00051      0.41      81     117 ..      77     112 ..      61     168 .. 0.82
   2 ?   -0.9   0.0       1.2   9.8e+02     233     257 ..     205     229 ..     195     240 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00051
  LIDHydrolase  81 sekdvklilvGHSvGaYialevlkrlsersikkvvlL 117
                   ++   +l ++GHS G  ia+ +   ++er i+++v++
    EHU01503.1  77 AQGIERLSVIGHSMGGKIAMTMSALAPER-IEQMVMI 112
                   45667899**************9999998.9999997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
  LIDHydrolase 233 kDhWvpeetrdelkellgeeklevd 257
                   +  +  +++rd++ +++++++++v 
    EHU01503.1 205 DSPYLDNQYRDAILQQFPAAQAHVI 229
                   5567889999******999877773 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00024       0.2      64     119 ..      61     112 ..      58     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
     DUF2974  64 evpaqesAlkYlnkileesegkiylgGhSkGGnlAvyaamnaeddlqeriskiysf 119
                 e++ q  A + l+++ ++  +++ + GhS GG +A+  ++ a+++++    +++ +
  EHU01503.1  61 EMTYQVMAQDMLDTLDAQGIERLSVIGHSMGGKIAMTMSALAPERIE----QMVMI 112
                 5667888888899998888889*************988888666555....44444 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.19      22      55 ..      81     115 ..      61     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                 SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES-- CS
      BAAT_C  22 dkigllGiSkGgelalllasflk.kisavvlings 55 
                 ++  ++G+S Gg++a+ +++  +  i+ +v+i  +
  EHU01503.1  81 ERLSVIGHSMGGKIAMTMSALAPeRIEQMVMIDIA 115
                 56789*****************999*999998655 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00033      0.27      83     115 ..      71     101 ..      60     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
      DUF900  83 llrylatkksakkihllaHSmGtwlvlealrql 115
                 +l +l  + + ++++++ HSmG  +++ + ++l
  EHU01503.1  71 MLDTLDAQ-GIERLSVIGHSMGGKIAMTM-SAL 101
                 56666655.99************998865.444 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00047      0.38      36      56 ..       8      28 ..       2      32 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00047
  Abhydro_lipase 36 svssklekkpvVlLqHGLlas 56
                    ++++++  + +VlL HGL+ s
      EHU01503.1  8 QTEQSSADSTPVLLIHGLFGS 28
                    5678899999*********98 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.28      92     134 ..      67     113 ..      57     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
     DUF1057  92 yskalleelelk..gklillghsRGcenaLqlavtl..eahGlvlin 134
                  ++ +l++l+ +  ++l ++ghs G+  a+ +++        +v+i+
  EHU01503.1  67 MAQDMLDTLDAQgiERLSVIGHSMGGKIAMTMSALApeRIEQMVMID 113
                 57789*******999**************988776644455677764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2149.31
//
Query:       EHU01504.1  [L=183]
Description: regulatory protein for replication initiation [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-49  164.1   0.0    1.3e-48  163.5   0.0    1.3  1  SeqA          SeqA protein C-terminal domain
    4.1e-25   86.8   0.3    7.3e-25   86.0   0.3    1.4  1  SeqA_N        SeqA protein N-terminal domain
  ------ inclusion threshold ------
       0.15   12.8   0.0       0.32   11.8   0.0    1.6  1  VAPB_antitox  Putative antitoxin


Domain annotation for each model (and alignments):
>> SeqA  SeqA protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   2.2e-52   1.3e-48       2     110 ..      73     181 ..      72     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 2.2e-52
        SeqA   2 kveelleseefaeekkavnrFlliLsalyradpeaFakatekvkGrtRvYfakdeetllasgkstkpkqipetpfWVitNnntarKrlileevmesmel 100
                 +v+ell s+e+ae+k+avnrF+liLs+lyr+d +aFa+at +++GrtR+Yfa de+tll+sg++tkpk++p tp+WVitN+nt+rKr+++e++m sm++
  EHU01504.1  73 AVRELLLSDEYAEQKRAVNRFMLILSTLYRLDTAAFAEATTSMQGRTRIYFAGDEHTLLQSGTHTKPKHVPGTPYWVITNTNTGRKRSMIEHIMLSMQF 171
                 699************************************************************************************************ PP

        SeqA 101 peeliekvke 110
                 p+el+ekv++
  EHU01504.1 172 PSELAEKVCG 181
                 ********97 PP

>> SeqA_N  SeqA protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.3   1.2e-28   7.3e-25       1      36 []       1      36 [.       1      36 [. 0.98

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.2e-28
      SeqA_N  1 MKtIevDeeLYrYIasntqaiGESaSdILRRLLnLp 36
                MKtIevDeeLYrYIas+tq+iGESaSdILRR+L+++
  EHU01504.1  1 MKTIEVDEELYRYIASHTQHIGESASDILRRMLKFT 36
                *********************************985 PP

>> VAPB_antitox  Putative antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.3e-05      0.32       1      34 [.       2      35 ..       2      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
  VAPB_antitox  1 KtIsIsdevYekLkklKr.egeSFsdvIerLlekk 34
                  KtI +++e Y+   +  +  geS sd+++r+l+  
    EHU01504.1  2 KTIEVDEELYRYIASHTQhIGESASDILRRMLK-F 35
                  9*************998878***********97.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1484.34
//
Query:       EHU01505.1  [L=546]
Description: phosphoglucomutase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-37  128.8   0.0      3e-37  127.4   0.0    1.7  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    6.5e-30  103.7   0.0    1.4e-29  102.6   0.0    1.6  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    9.1e-20   71.2   0.0    2.2e-19   70.0   0.0    1.7  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
      9e-09   35.4   0.0    2.3e-08   34.1   0.0    1.6  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.0   6.6e-41     3e-37       2     134 ..      40     180 ..      39     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 6.6e-41
                 GGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE...EB-HHHHHHHHHHCC.....EC CS
   PGM_PMM_I   2 qkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg...llptPavsfairklk.....ad 92 
                 +kfgtsG+Rg++g++ ++++++++++qaiae  k+++ +++ +vG+Dt++ s+ +  +++++l+anGv+vi+ +   ++ptPa+s ai +++     ++
  EHU01505.1  40 VKFGTSGHRGSAGRHSFNEKHILAIAQAIAEERKKNDITGPCYVGKDTHALSEPALLSVLSVLTANGVDVIVQQdngYTPTPAISNAILEHNksggpLA 138
                 69**********************************************************************99999*************999****9* PP

                 EEEEE--TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCCT CS
   PGM_PMM_I  93 agimitaSHnppeyngiKvylsnGgpispeveekIeaiieke 134
                 +gi+it+SHnppe+ giK++++nGgp++++v++ +e+++++ 
  EHU01505.1 139 DGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANQL 180
                 *************************************99875 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   3.2e-33   1.4e-29       1     114 []     320     440 ..     320     440 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 3.2e-33
                  HHHHHHHHHHHHHHCH..CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTT.....BSS--HHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee..klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiiflde.....attkDGilaall 91 
                  +++++la++++yl+++  ++ ++ +v kt+++s +++rv+++ g+klve++vG+k++++ + ++++ +GgEeS++++fl++     +t+kDGi+ +ll
   EHU01505.1 320 NPNHYLAVAINYLFQHrpQWGQDVAVGKTLVSSAMIDRVVDDIGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFdgtpwSTDKDGIILCLL 417
                  68***********9999***99999********************************************************99999999********* PP

                  HHHHHHHHTS-HHHHHHHHHHHH CS
  PGM_PMM_III  92 vleilaetgkslselleellkky 114
                  ++ei+a tgk++++ ++el +++
   EHU01505.1 418 AAEITAVTGKNPQQHYDELAARF 440
                  ****************9998775 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0     5e-23   2.2e-19       2     103 .]     210     317 ..     209     317 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 5e-23
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TT......SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS- CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfpt......kapnpeekealkllielvkkegadlglafDgDaD 94 
                 +Y+e+l +++d+ ai+k+glk+ +dpl+G+g  +++++ +++++d++ +n++ d++f        + +++++++++++++ l+ k+++dl++ +D+D+D
  EHU01505.1 210 PYVEGLSQIIDIPAIQKAGLKIGVDPLGGSGIAYWQRIAEHYKLDLTLVNDAVDQTFRFmhldkdGVVRMDCSSECAMAGLLAYKDKFDLAFGNDPDYD 308
                 7*********************************************************99999999********************************* PP

                 BEEEEETTE CS
  PGM_PMM_II  95 RlgvvderG 103
                 R+g+v++ G
  EHU01505.1 309 RHGIVTPAG 317
                 *****9987 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   5.2e-12   2.3e-08      16      72 ..     482     538 ..     466     540 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 5.2e-12
                 CCCCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEES.SHHHHHHHHHHHHHH CS
  PGM_PMM_IV  16 laallkvasikeglkilledGrrlavRpSGTepllrvyvEak.sdeelarlaeevael 72 
                 l a+ +++  ++glk+ +e+G+++  RpSGTe+  ++y+E+    e+ a++++e +e+
  EHU01505.1 482 LTAAPGNGASIGGLKVMTENGWFA-ARPSGTEDAYKIYCESFlGAEHRAQIEKEAVEI 538
                 444444556899************.***************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4074.80
//
Query:       EHU01506.1  [L=224]
Description: DNA-binding response regulator in two-component regulatory system with KdpD [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-26   92.9   0.0      2e-26   92.3   0.0    1.3  1  Response_reg  Response regulator receiver domain
    7.9e-22   77.1   0.1    1.4e-21   76.3   0.1    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.17   12.4   0.0       0.45   11.0   0.0    1.6  2  DUF5064       Domain of unknown function (DUF5064)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   3.4e-30     2e-26       1     112 []       4     113 ..       4     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 3.4e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vli++D++ +r+ +r +le+eg+ +v  ae+ +  l  + ++k+dl++lD+ +p+ dG +++ e+r+ + +lpvi+l+a+++e+d+++al+agadd+
    EHU01506.1   4 VLIIEDEKEIRRFVRLALESEGL-KVFDAETLQRGLIEAATRKPDLVILDLGLPDGDGKTFIGELRQWS-TLPVIVLSARTDEQDKIDALDAGADDY 98 
                   8**********************.*******************************************88.*************************** PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l+Kpf + eLl++++
    EHU01506.1  99 LTKPFGIGELLARVR 113
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.1   2.4e-25   1.4e-21       1      77 []     146     222 ..     146     222 .. 0.99

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 2.4e-25
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  geev+ltp ef+lL++Ll+n+g+v+++ +Ll++vwg +    ++ ++ ++ +LR+kLe+++ +p ++ t  g+GYr+
   EHU01506.1 146 GEEVHLTPIEFRLLTTLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEANPTQPVHLLTETGIGYRF 222
                  789************************************************************************97 PP

>> DUF5064  Domain of unknown function (DUF5064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.92   5.5e+03      92     112 ..     129     149 ..     112     153 .. 0.57
   2 ?   11.0   0.0   7.6e-05      0.45      73     114 ..     170     212 ..     159     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.92
                 THHHHHHHHHHHHHSS----- CS
     DUF5064  92 eydamfeDiRekLevkpGepv 112
                  +  +  Di ++  ++ Ge v
  EHU01506.1 129 SFADVVVDIAARRVLRAGEEV 149
                 344444555555555555555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.6e-05
                 HHHHTT--GGG-SSSS--TTHHHHHH.HHHHHHHSS-----TH CS
     DUF5064  73 larkhglppkasavvrehkeydamfe.DiRekLevkpGepvdl 114
                 l +++ l++  ++ + eh++y +++   +R+kLe++p +pv l
  EHU01506.1 170 LTQRQLLNQVWGPNAVEHSHYLRIYMgHLRQKLEANPTQPVHL 212
                 346778888899999**********647*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1673.82
//
Query:       EHU01507.1  [L=37]
Description: hypothetical protein CKS_3767 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-16   59.8   0.9    1.8e-16   59.7   0.9    1.0  1  DUF2517   Protein of unknown function (DUF2517)


Domain annotation for each model (and alignments):
>> DUF2517  Protein of unknown function (DUF2517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.9   9.8e-21   1.8e-16       1      36 [.       2      37 .]       2      37 .] 0.99

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 9.8e-21
     DUF2517  1 ykeYslkrvllRRilvvlvGilAlPvmlfrkdRarF 36
                y++Y+l++++lRR+lv+l G+lAlPvmlfr+dRarF
  EHU01507.1  2 YRTYPLHKIILRRTLVILSGLLALPVMLFRQDRARF 37
                99*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 290.27
//
Query:       EHU01508.1  [L=156]
Description: carboxymuconolactone decarboxylase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-14   54.1   0.6    1.2e-14   54.1   0.6    1.8  2  CMD       Carboxymuconolactone decarboxylase family
      0.004   17.1   0.0     0.0059   16.5   0.0    1.2  1  DUF494    Protein of unknown function (DUF494)


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.6   1.3e-18   1.2e-14       1      85 []      19     101 ..      19     101 .. 0.92
   2 ?   -0.3   0.1      0.12   1.1e+03      56      83 ..     123     150 ..     116     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 1.3e-18
                 HHHHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
         CMD   1 pellraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaaee 85 
                 p++ +al+ l++a+   ++gL++ + eLi+l++s++n c++C+++H++ A++  +++ + + v+ +++a  +++++ aAla++e+
  EHU01508.1  19 PDVVAALAMLGKAVD--DSGLEKSLTELIKLRASQLNACAFCLQYHLNLARKTDLSPVKMDLVAVWREAGIYSERECAALAWTEA 101
                 666667766666665..999**************************************************************985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
                 -HHHHHHHHHHHHHHHSHHHHHHHHHHH CS
         CMD  56 teeeiaevlaqaaayagwpaaraAlaaa 83 
                 +++eia +    a+  +w+ +  Al++a
  EHU01508.1 123 DKQEIAFLTSAVAPINAWNCIAGALQFA 150
                 5789999999999999999998888865 PP

>> DUF494  Protein of unknown function (DUF494)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.6e-07    0.0059      14      80 ..      68     133 ..      58     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.6e-07
      DUF494  14 eaeacpdedeLereLsaaGFeeeeIqkAldwleeLaaaaeeeeeaalasssslRiyteeEqekLdae 80 
                 +++  p + +L     +aG  +e+  +Al+w e+L+ +a+++ ++a   ++  R++ ++E + L+ +
  EHU01508.1  68 KTDLSPVKMDLVAVWREAGIYSERECAALAWTEALTLMAQQPVSDA-VYAEVSRVFDKQEIAFLTSA 133
                 66777888889999999**9999999***************99885.899999********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1240.89
//
Query:       EHU01509.1  [L=156]
Description: MarR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   43.7   0.0    3.3e-11   42.9   0.0    1.5  1  MarR_2     MarR family
    1.4e-09   37.7   0.0    2.9e-09   36.7   0.0    1.6  1  MarR       MarR family
    0.00025   20.5   0.0    0.00084   18.9   0.0    1.8  2  HTH_24     Winged helix-turn-helix DNA-binding
     0.0069   16.3   0.1      0.013   15.5   0.1    1.7  1  HTH_Crp_2  Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.4   0.0      0.051   13.8   0.0    1.3  1  HTH_34     Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   9.2e-15   3.3e-11       2      61 ..      48     105 ..      47     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 9.2e-15
                 T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61 
                 g+t+ q+ vL  L++ pg   + ++lar   l+++++s i++ L++aG++ rrp   ++R
  EHU01509.1  48 GVTLPQFSVLTMLAAYPG--ASGADLARLSLLTPQTMSVIVANLERAGMICRRPHAVHGR 105
                 89****************..9*********************************999999 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     8e-13   2.9e-09       2      53 ..      50     101 ..      49     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 8e-13
                 -HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET CS
        MarR   2 tltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsksp 53 
                 tl+qf++L++l+  +++s ++La+ + +++ t++ ++  Le++G+i R+++ 
  EHU01509.1  50 TLPQFSVLTMLAAYPGASGADLARLSLLTPQTMSVIVANLERAGMICRRPHA 101
                 99***********************************************986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.3e-07   0.00084       6      47 ..      54      95 ..      52      95 .. 0.95
   2 ?   -1.7   0.0      0.63   2.3e+03      15      25 ..     103     113 ..     102     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-07
      HTH_24  6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + +L  L + p+ s ++LA+ + l+p+t +  + +Le++G I
  EHU01509.1 54 FSVLTMLAAYPGASGADLARLSLLTPQTMSVIVANLERAGMI 95
                678999**********************************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.63
      HTH_24  15 nprisqreLAe 25 
                 ++ri   e+A+
  EHU01509.1 103 HGRIQVIEIAD 113
                 5899999**98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   3.5e-06     0.013      25      54 ..      69      98 ..      27     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.5e-06
                HHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglisrg 54
                ++lA++  lt++t+s i + L+r+g+i r+
  EHU01509.1 69 ADLARLSLLTPQTMSVIVANLERAGMICRR 98
                79*************************964 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-05     0.051       3      77 ..      54     127 ..      53     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
      HTH_34   3 lavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkkyvkaLk 77 
                 ++vl++La+   a+ ++l     +t   +sv +  Le ag i ++   + + +  +++i ++Gre  ++ + a++
  EHU01509.1  54 FSVLTMLAAYPGASGADLARLSLLTPQTMSVIVANLERAGMICRRPHAVHG-RIQVIEIADAGREVLAQCKVAVQ 127
                 899**************************************9888887777.999**********9998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1368.02
//
Query:       EHU01510.1  [L=319]
Description: hypothetical protein CKS_3771 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-42  144.4   0.6    3.8e-42  143.3   0.5    1.6  2  DUF1722     Protein of unknown function (DUF1722)
    2.2e-39  134.6   0.0    3.1e-39  134.2   0.0    1.2  1  DUF523      Protein of unknown function (DUF523)
  ------ inclusion threshold ------
      0.041   14.2   0.0       0.07   13.5   0.0    1.4  1  RPAP2_Rtr1  Rtr1/RPAP2 family
      0.049   13.4   0.0      0.086   12.7   0.0    1.3  1  RhoGAP      RhoGAP domain


Domain annotation for each model (and alignments):
>> DUF1722  Protein of unknown function (DUF1722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   6.5e+03      49      62 ..      90     103 ..      86     105 .. 0.84
   2 !  143.3   0.5   8.5e-46   3.8e-42       1     117 []     193     310 ..     193     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
     DUF1722  49 kkhinvlqhilgyf 62 
                 +k ++ l+h++gy+
  EHU01510.1  90 EKRVKSLHHLCGYI 103
                 56788999****96 PP

  == domain 2  score: 143.3 bits;  conditional E-value: 8.5e-46
     DUF1722   1 Kyllmahsqkeyrelgrlvanakk.epleelaeeYeellmealskpatrkkhinvlqhilgyfkkklsaeekqelleliekYregkvplsvpltlLkhy 98 
                 K+ll+ahsqk+yrelg +va++++ e+le++a eY+++lm+++s+pa+r++h+nvl+h++gyf+++ls+ +++el++li+ Yr+g+ pl +p+t+Lkhy
  EHU01510.1 193 KLLLLAHSQKKYRELGPFVASMNQwESLEAFAFEYRNRLMDLMSQPASRTNHTNVLMHVQGYFRSQLSSPQRRELTSLIDCYRQGTQPLLAPITILKHY 291
                 9********************999899************************************************************************ PP

     DUF1722  99 arkydneylleqtylnpyP 117
                 +++y++++l +q+y++pyP
  EHU01510.1 292 MAEYPHPWLTQQRYFDPYP 310
                 ******************9 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   6.9e-43   3.1e-39       1     137 []       7     150 ..       7     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 6.9e-43
      DUF523   1 ilvSaCLlgekvrydgkakksevleeelkelvkeelvpvCPEvaggLptPRepael.......akr.vlkkeg.edvtealekgaeealeelkeeeikg 90 
                 +++SaCLlge+vr+dg++k+ ++++e+l+ +v  ++ pvCPE+a+gLptPR++++l       + + + +keg +d+t+++++++e+ +++l++  ++g
  EHU01510.1   7 VGISACLLGESVRFDGGHKRLAFATEQLTPFV--RFEPVCPEMAIGLPTPRPALRLvkqsdddELHlCFSKEGgDDITDKMRDWSEKRVKSLHH--LCG 101
                 78******************************..****************************944445555555****************9995..*** PP

      DUF523  91 ailkekSPSCGveki..YdgtfskklvegeGvfaallkeegievpseee 137
                 +il++kSPSCG+e++  Y+   ++++++g+G+f++ l++e++++p ee+
  EHU01510.1 102 YILCAKSPSCGMERVriYEPATNNNRKAGTGIFTRFLQREMPWLPLEED 150
                 **************999*98889999*******************9985 PP

>> RPAP2_Rtr1  Rtr1/RPAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05      0.07      16      43 ..      95     119 ..      83     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                 HCTT--SSTT--S--SS----------- CS
  RPAP2_Rtr1  16 niekkCGyplCnnsleedkrqkekyris 43 
                 ++ ++CGy+lC +s++      e+ ri+
  EHU01510.1  95 SLHHLCGYILCAKSPSCGM---ERVRIY 119
                 7899*******99886544...555555 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.9e-05     0.086      16      77 ..     249     305 ..     243     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
                 TTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHH CS
      RhoGAP  16 ldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkely 77 
                 ++++g +R + s+ + +el++ +d  ++       + + a  ++LK+++ e+p+p lt++ y
  EHU01510.1 249 MHVQGYFRSQLSSPQRRELTSLIDCYRQG-----TQPLLAPITILKHYMAEYPHPWLTQQRY 305
                 7899*****************99998886.....6999********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2727.08
//
Query:       EHU01511.1  [L=475]
Description: FAD-binding deoxyribodipyrimidine photolyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-83  277.1   5.5    1.2e-82  276.3   5.5    1.4  1  FAD_binding_7   FAD binding domain of DNA photolyase
    1.1e-48  165.4   0.1    4.7e-48  163.3   0.1    1.9  2  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.3   5.5   1.4e-86   1.2e-82       1     201 [.     275     469 ..     275     470 .. 0.95

  Alignments for each domain:
  == domain 1  score: 276.3 bits;  conditional E-value: 1.4e-86
                    HHHHHHHHHHHHHHHHCSTTTT.TSSTTGCCTT------HH.HHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHCTTT-B-HHHHHHH CS
  FAD_binding_7   1 flreLlwrefyyallaaepela.eralkekfdripweeseeekleaWkeGrTGfPlvDAamrqLretGwmhnrlRmivasFltkdLlidWregeev 95 
                    +++eL+wrefy++l++a+p+l+ ++++ + +++++w+++e+ +++aWk+G+TG+P+vDAamrq+ +tGwmhnrlRmi+asFl+kdLlidWr+ge++
     EHU01511.1 275 WINELIWREFYRHLIVAFPRLCkHQPFVHWTRHVAWQRNEA-HFDAWKAGKTGYPIVDAAMRQMLQTGWMHNRLRMITASFLVKDLLIDWRQGERY 369
                    99*******************978889999999***88755.7***************************************************** PP

                    HHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHHHT-GGGSGCHHHHHHT--TTTSS---SS-HHH CS
  FAD_binding_7  96 FeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpakyihepwkapaeeqkkagvvlgkdYpkpivdhke 191
                    F+++l+D+dla+n+g+wqw+a+tg+daap+frifnp++q+++fD++g++ir+++peLk++p+++ih+p++ ++++      +++ dYp+piv+hk+
     EHU01511.1 370 FMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQSERFDEQGDFIRHYLPELKDVPDSAIHQPHEWARKN------NKTLDYPTPIVEHKD 459
                    *********************************************************************877655......4689*********** PP

                    HHHHHHHHHH CS
  FAD_binding_7 192 arkraleayk 201
                    ark++l+a++
     EHU01511.1 460 ARKKTLDAFE 469
                    ******9986 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   0.1   5.3e-52   4.7e-48       2     161 ..       5     173 ..       4     176 .. 0.93
   2 ?   -1.3   0.0      0.22   1.9e+03      19      59 ..     388     427 ..     381     429 .. 0.77

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 5.3e-52
                     EEEESS---STT-HHHHHH.HCTTSEEEEEEEE-HH..HHTCGS-CHHHHHHHHHHHHHHHHHHHHTT--EEEEESS....HHHHHHHHHHHCTE CS
  DNA_photolyase   2 lvWfrrDlRlhDNpALaaA.aasgepvipvfvldpe..kahklrvgaarvdfllesLadLdeeLrelgirLvvrrgd....padvlpelakelga 89 
                     lvWfr+DlR++DN AL+aA  +s+++vi++f+++p   ++h++  ++++++f++++L++L+++L+e+gi+L+v + d    ++d l+ ++++ ++
      EHU01511.1   5 LVWFRNDLRINDNLALHAAcSKSDARVIALFIATPGqwQQHDM--APRQAAFIHQNLCSLQASLAEKGIPLHVHQYDdfaaSVDFLVTFCEQQNV 97 
                     89*****************5555789**********7777888..*******************************99**9************** PP

                     CEEEEE---SHHHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHHHHC....S-TT CS
  DNA_photolyase  90 savvanreyepdererdeavkealrkagievesfddhtlvepgevktkkgkpykvFtpfrkrwlkelk....eplp 161
                     +++++n++ye +er+rd++ +++l++a++ ++ fdd++l+ pg+++t++g++ykvFtpfrk+  ++l+    e++p
      EHU01511.1  98 DQLFYNYQYEFNERQRDAQAEKRLDEADVICQGFDDSVLLSPGSIQTGDGEMYKVFTPFRKAFIRRLQqglpECVP 173
                     ***************************************************************9999955554555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.22
                     HHHCTTSEEEEEE.EE-HHHHTCGS-CHHHHHHHHHHHHHHH CS
  DNA_photolyase  19 aAaasgepvipvf.vldpekahklrvgaarvdfllesLadLd 59 
                      Aa++g   +p f +++p+ + +    + + df+ + L +L+
      EHU01511.1 388 WAASTGTDAAPYFrIFNPTTQSER--FDEQGDFIRHYLPELK 427
                     577777888888889999944444..7999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3464.95
//
Query:       EHU01512.1  [L=247]
Description: metal-binding predicted hydrolase-oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-57  192.6   0.0    1.2e-56  192.2   0.0    1.1  1  NIF3             NIF3 (NGG1p interacting factor 3)
  ------ inclusion threshold ------
       0.15   12.5   0.0       0.22   12.0   0.0    1.2  1  Glyco_tran_10_N  Fucosyltransferase, N-terminal


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   0.0   1.3e-60   1.2e-56       4     241 ..       8     233 ..       5     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 192.2 bits;  conditional E-value: 1.3e-60
        NIF3   4 evleelaplelaeswDnvGlqvgdpekevkkvllaldlteevleeAiekgadliithHPlifkplkrlteddykkrllkkliknnislysaHtnlDaap 102
                 +++++ +  + + ++ ++Glqv+  + evk++++++++++++l+eA++++ad++++hH++++k+  ++ +  +k+++l++l+ n+i+ly  H++lDa+p
  EHU01512.1   8 KIVNDQLATHTFSDYAPNGLQVE-GRPEVKTIVTGVTACQALLDEAVARKADAVLVHHGYFWKSEPAVIKG-MKRQRLRTLLANDINLYGWHLPLDAHP 104
                 5677778888999*********6.888***********************************766666555.6************************** PP

        NIF3 103 g.GvndwlakalglekieplepskeekkeeeeglgrigeleepvsleelakklkkklglekvrvagdldkkvkkvaicaGsGaslieeakakgaDlliT 200
                 + G+n++lak+lg++ + ++ p               g l++pvs ++la+++ + lg e +++  + +  +++va+c+G+G+ +i++a+a g+D++iT
  EHU01512.1 105 ElGNNAQLAKLLGINVMGEIMPL-----------VPWGGLTQPVSGHALAQRITDVLGREPLHCGDNAPAAIRRVAWCSGGGQGFIDNAAAFGVDAFIT 192
                 *************9988777774...........4579************************************************************* PP

        NIF3 201 GelkhhealdakekgiavidvgHyatErvflealaelLkek 241
                 Ge++++++++a+e+g++++++gH+atEr +++al+e+L e+
  EHU01512.1 193 GEVSEQTIHSAREQGLHFFAAGHHATERAGIRALGEWLAEH 233
                 **************************************986 PP

>> Glyco_tran_10_N  Fucosyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.22      29      61 ..      41      73 ..      17      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
  Glyco_tran_10_N 29 niseCelttdrslleeadavvfhhrdlvkklkd 61
                      ++ C+   d++  ++adav++hh  + k+   
       EHU01512.1 41 GVTACQALLDEAVARKADAVLVHHGYFWKSEPA 73
                     7899********************996555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1968.01
//
Query:       EHU01513.1  [L=218]
Description: putative enzyme subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-71  240.5   0.1    1.5e-71  240.3   0.1    1.0  1  CT_C_D    Carboxyltransferase domain, subdomain C and D


Domain annotation for each model (and alignments):
>> CT_C_D  Carboxyltransferase domain, subdomain C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.1   8.3e-76   1.5e-71       2     202 .]       5     202 ..       4     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 8.3e-76
                 EEEEETTTEEEEEE-SS--HHHHHHHHHHHHHHHT..STTECEEEE-SSEEEEEESCCCCHHHHHH.HHHHHHHH.---------EEEEEEEESTTT-T CS
      CT_C_D   2 rirplGdeallvefgeeisealskrvlalaaalrakalpgvvelvpayrsllvefdpealdaaellaalkalleeaeeeaaeesrlveipvcYdgevgp 100
                 r+  lG++a+++e++ ++s+a+++r+++l ++l++   ++  e++p++++l++ +++   da++  a+l+++++e+e++++ esrlv+ipv+Y+ge+gp
  EHU01513.1   5 RCYMLGERAVVLELSPPVSLASQQRIWHLCQRLQS--HDATREVIPGMNNLTLLLREPPRDARQATAQLEQWWQESEAQDT-ESRLVTIPVIYGGEAGP 100
                 66789******************************..99*****************8888**************9666555.5569************* PP

                 THHHHHHHHTS-HHHHHHHHHHS-EEEEEE-SSTT-EEE----GGG-----SS--S-B-TTEEEEETTEEEEE-S-B---SEEEEEE-S-SB-TTSSSS CS
      CT_C_D 101 DLeevaelnglsveevirlhtaaeyrvaflGfapGfaylggldprlavpRrasPrtrvpagsVgiageqtgiyplesPGGWqliGrTplplfdpdrepp 199
                 DL +va+++g+++++v++lh++++y v+f+Gf pGf+yl+gld+rl++pRra+Pr +vpagsVgi+g+qtg+ypl sPGGWqliGrT+++lf  +++pp
  EHU01513.1 101 DLRQVADHAGMTEKQVVALHSSTDYAVFFIGFQPGFPYLAGLDARLHMPRRAEPRVAVPAGSVGIGGSQTGVYPLVSPGGWQLIGRTQVALFTSSQQPP 199
                 *************************************************************************************************** PP

                 BS- CS
      CT_C_D 200 all 202
                 +ll
  EHU01513.1 200 TLL 202
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1774.15
//
Query:       EHU01514.1  [L=310]
Description: putative enzyme subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-93  313.6   0.0    1.4e-93  313.4   0.0    1.0  1  CT_A_B    Carboxyltransferase domain, subdomain A and B


Domain annotation for each model (and alignments):
>> CT_A_B  Carboxyltransferase domain, subdomain A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4   0.0   7.6e-98   1.4e-93       1     263 [.      24     281 ..      24     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 313.4 bits;  conditional E-value: 7.6e-98
                 GT----S-SSHHHHHHHHHHTTS-TTS-EEEEESC-EEEEESS-EEEEEEESCEEEEETTEEE-SSCEEEE-TT-EEEEEEESSECEEEEEETT-BE-- CS
      CT_A_B   1 lGvprsGamDrlalrlANrlvgNeegaaaLEitlggpelrfeedavvavtGadleatldgepvplwepvevkaGdvLklgaakaGlraYLavaGgldvp 99 
                 +G+ +sG++D+ a+ +AN+l gN++g+a+LEi+lg+++ +f++d ++a+tGa ++a+ldg+pv + +++ vk+G+vL l+++ +G+r+YLav+Gg+++p
  EHU01514.1  24 YGIGVSGVLDQPAMITANLLAGNPPGSAVLEIVLGQFKAEFRRDGWFALTGAGCQAELDGKPVWTGWRLPVKKGQVLVLKKPIHGMRSYLAVHGGFAIP 122
                 69************************************************************************************************* PP

                 -BTTB-S-BTTTTBSTTTTS---TT-EEEBSSSTT--S-C.BGGCS---SSCSEEEEEEEE-TTGCCB-HHHHHHHHHS-EEEECEECSSEEEEESGG. CS
      CT_A_B 100 evlgSrStdllaglGgleGraLkagdvLplgeaaaaaaakakeleaaapeeseeeevrvvpGpqadlfteealeallssewtvsaesdRmGvrLdGeag 198
                 +vlgS+Std++ag+Gg+eGr+L++gd +plg+++++ ++k   +  ++    +   +r++pGp+++ f+e++++a+++++w+++++s+RmG+rL+G ++
  EHU01514.1 123 PVLGSCSTDIKAGFGGFEGRTLQDGDGIPLGKPQQHFTSK---KGVRQLLWGN--RIRALPGPEYHEFSEASQQAFWRAAWKLNPQSNRMGYRLQG-PA 215
                 ************************************9974...3333333333..59***************************************.55 PP

                 SSCS..TEEEEEE--TTEEEE-CTTEEEEE-TTS-SEEEEEEEEEE-GGGHHHHTT--TTSEEEEE CS
      CT_A_B 199 lerke.sellsegvvlGaiqvppdgqpivllaDhqttGGYpkiatvisadldklaQlrpgdkvrFe 263
                 l+r+  +ells+g+v+G iqvp++gqpivllaD+qttGGYp+ia+vi+ dl  laQ+r g+ ++F 
  EHU01514.1 216 LQRDVpRELLSHGLVPGVIQVPGNGQPIVLLADAQTTGGYPRIACVIECDLYHLAQIRLGEPIHFM 281
                 9996668**********************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2647.55
//
Query:       EHU01515.1  [L=245]
Description: putative lactam utilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-91  306.3   1.7    1.7e-91  306.2   1.7    1.0  1  LamB_YcsF  LamB/YcsF family


Domain annotation for each model (and alignments):
>> LamB_YcsF  LamB/YcsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.2   1.7   9.4e-96   1.7e-91       1     237 [.       3     234 ..       3     236 .. 0.99

  Alignments for each domain:
  == domain 1  score: 306.2 bits;  conditional E-value: 9.4e-96
                 EEEEEEE---BTTB--S-HHHHCCC-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHT CS
   LamB_YcsF   1 idlnaDlGEsfgawklgdDeallplvtsaNiACGfHaGdpevmrktvelakekgVaiGAhpgypDlegFGRremelspeelealvlyQigaLkafakae 99 
                 idlnaDlGE+      ++D+all+lv+saNiACGfHaGd+++m +++++a e gVaiGAhp++pD+e+FGR +m+l+pe+++a ++yQ+gaLk++a++e
  EHU01515.1   3 IDLNADLGEG-----SSSDRALLQLVSSANIACGFHAGDAQMMLQAIRWASEFGVAIGAHPSFPDRENFGRSAMQLPPETVYAHIIYQVGALKSLAESE 96 
                 8********7.....459********************************************************************************* PP

                 T----EE---HHHHHHHHH-HHHHHHHHHHHHHH-TT.TEEEETTSHHHHHHHHCT--EEEEEETTB-B-TTSSB--TTSTTSB---HHHHHHHHHHHH CS
   LamB_YcsF 100 gvklshvkpHGaLynqaakdeelaeavveavkaldpelillglagseleeaaeeaglkvvaevfaDraYeadgslvprsqpgaviedpeevaervlklv 198
                 g +l hvkpHG+Lynqaa+d++laea+++avka+d++li++gla+sel +aa+++glk+ +evfaDr Y ++g+lvpr qpga+ie+++++++++l +v
  EHU01515.1  97 GQSLVHVKPHGMLYNQAAADATLAEAIARAVKAVDARLIMVGLANSELIRAAAHHGLKTREEVFADRGYLSSGALVPRGQPGALIEEEDQAIQQTLMMV 195
                 *************************************************************************************************** PP

                 HTSEEEBTTSSEEE---SEEEE-SSSHHHHHCHCCCCHH CS
   LamB_YcsF 199 eegkvtavdgeevelkadsicvHgDtpeavelaravrea 237
                 ++g+v +v+ge v+++a+++c+HgD ++a+++a+++r+ 
  EHU01515.1 196 RQGQVISVTGEAVQVNAETVCLHGDGAHALTFAQRLRAS 234
                 ************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1859.59
//
Query:       EHU01516.1  [L=243]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-88  293.6   3.2    8.6e-88  293.4   3.2    1.0  1  DUF969           Protein of unknown function (DUF969)
     0.0068   16.5   2.1      0.013   15.6   2.1    1.5  1  Na_H_antiport_2  Na+-H+ antiporter family
  ------ inclusion threshold ------
       0.18   12.5   3.3       0.64   10.8   0.6    2.6  2  PrgI             PrgI family protein
        9.7    6.6  13.3        1.4    9.3   7.7    2.4  2  DUF308           Short repeat of unknown function (DUF308)


Domain annotation for each model (and alignments):
>> DUF969  Protein of unknown function (DUF969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.4   3.2   1.9e-91   8.6e-88       1     215 [.       7     224 ..       7     225 .. 0.99

  Alignments for each domain:
  == domain 1  score: 293.4 bits;  conditional E-value: 1.9e-91
      DUF969   1 llkLigilivvvGfalkldtllvvvvaglvtglvaglslveiletlGkaFvknrlvslfllt.LpviglleraGLkeraaklikkikkatagrlllvYl 98 
                 l++L+gi+ +vvGf+l+++++lvv+v+g+vtg++a ++l +il++lG++F+++r++ l+ll+ L+vigller+GLk+ra+++i++ik+atagrll+vYl
  EHU01516.1   7 LWPLLGIAAIVVGFVLRFNPVLVVIVSGFVTGIAALMPLGDILQKLGEGFLNTRNLPLILLLpLAVIGLLERHGLKQRAQAWIAQIKTATAGRLLIVYL 105
                 599*******************************************************99998************************************ PP

      DUF969  99 lirelaaalgl.slgGhaqfvRPlvaPmaeaaaekkagelsekeeekikalaaaadnvglFFgqniFvaaggvlLikgtlkel.gievealqlalvaip 195
                 ++re++aalgl slgGh+q+vRPl+aPmae+a e+++g l+ + +++++a++aa+dnvglFFg++iFva+g++++++++++e+ gi+ e+l++al+ ip
  EHU01516.1 106 FVREVTAALGLtSLGGHPQMVRPLLAPMAEGASENRYGALPPEVRHRLRAMSAATDNVGLFFGEDIFVAFGAIIFMHNFMQESaGIQTEPLHIALWGIP 204
                 ********************************************************************************9866*************** PP

      DUF969 196 vaiialviaavrlllldrkl 215
                 +a+ a++i+++rl+ ldr+l
  EHU01516.1 205 TALSAFLIHSARLIRLDRQL 224
                 ******************99 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.1     3e-06     0.013       9      77 ..      15      83 ..      10      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-06
  Na_H_antiport_2  9 vmlvLsllrvnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltd 77
                      ++v  +lr+n vl +++s +v G+ + ++l ++++ + +G+ +  +  l ++l  a+   + + gl++
       EHU01516.1 15 AIVVGFVLRFNPVLVVIVSGFVTGIAALMPLGDILQKLGEGFLNTRNLPLILLLPLAVIGLLERHGLKQ 83
                     4455567899*******************************9999988887777666666677777665 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00014      0.64      22      77 ..      28      91 ..       8     103 .. 0.76
   2 ?    1.4   0.1      0.12   5.5e+02      29      62 ..     171     209 ..     164     228 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
        PrgI 22 liflvlallvaiglylllrafl......eelasvlvillavPvaalgfykkdglp..lekylka 77
                l+++v++++++i++++ l  +l        ++  l ++l +P+a++g+ +++gl+  ++ ++++
  EHU01516.1 28 LVVIVSGFVTGIAALMPLGDILqklgegFLNTRNLPLILLLPLAVIGLLERHGLKqrAQAWIAQ 91
                56788888888888888888886665553344555556689*************6555555554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
        PrgI  29 llvaiglylllrafl.....eelasvlvillavPvaalg 62 
                 ++va+g+++++++f+      ++  + + l  +P a+ +
  EHU01516.1 171 IFVAFGAIIFMHNFMqesagIQTEPLHIALWGIPTALSA 209
                 568999999999999544443333344444455555555 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   7.7   0.00032       1.4       1      33 [.      10      42 ..      10      44 .. 0.95
   2 ?   -0.5   0.3      0.36   1.6e+03      32      44 ..     172     184 ..     163     212 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00032
      DUF308  1 llGillivlGilalllPvaallalvllfGilll 33
                llGi +iv+G+++ ++Pv++++++ ++ Gi +l
  EHU01516.1 10 LLGIAAIVVGFVLRFNPVLVVIVSGFVTGIAAL 42
                68****************************987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.36
      DUF308  32 llvsGivqiiaaf 44 
                 ++++G++ +++ f
  EHU01516.1 172 FVAFGAIIFMHNF 184
                 4555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1721.03
//
Query:       EHU01517.1  [L=338]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.6e-124  413.3  20.9   6.8e-124  413.1  20.9    1.1  1  DUF979    Protein of unknown function (DUF979)


Domain annotation for each model (and alignments):
>> DUF979  Protein of unknown function (DUF979)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.1  20.9  3.8e-128  6.8e-124       2     311 .]       6     337 ..       5     337 .. 0.97

  Alignments for each domain:
  == domain 1  score: 413.1 bits;  conditional E-value: 3.8e-128
      DUF979   2 llYilvGlvllvvavlalrdkenpkrigtalFwlllglvfllgkl.................lpalvvGvlvivlallagfkqvkkgklkesseeerek 83 
                 +l +l+Gl+llvvavl++rd++np+r++t+lFw+l+gl+fl+g++                   ++ vG++v++++ lag++ vk+g+++++se+e+++
  EHU01517.1   6 YLMWLAGLILLVVAVLSWRDSANPRRFTTGLFWGLYGLIFLVGDWttalmtqlmgsaesgtrTLQISVGLAVVIMGSLAGCGGVKMGRYHQRSEAEKQA 104
                 7889****************************************777888888888888888999********************************** PP

      DUF979  84 sakklgnklflpallipvvalvvalllkklk....alldakk.tklatlvalglgavvalivalvltkekpkealkegrrlldavgwaaiLpqlLaaLG 177
                 sa++lgnklflpal+ipvv+++++l++++l+     ++ a + ++l tl+++++g+++++++a+ +t+e+p+++++e+rrlld +gwa++Lpq+La+LG
  EHU01517.1 105 SAQRLGNKLFLPALAIPVVTVIGVLAFNNLPglqtWVFGAGNhSTLITLFSMAVGCLLGWLIAMKMTRETPVQSMQETRRLLDCIGWAFLLPQILATLG 203
                 *****************************9999886677777689****************************************************** PP

      DUF979 178 avFaaagvGkvvaklvskvipegsrllavvvYcvgmalfTiimGNaFAAfpvitagiglPlliaqlganpavvaalgmlaGycGTLltPmAANFNivPa 276
                 ++F+aagvG ++++l++++++ ++r++av vY+ gmal+T++mGNaFAAfp+itagig+P+l+ q+g+npav+aa+gm++GycGTL+tPmAANFNivPa
  EHU01517.1 204 LLFTAAGVGGAISHLTEHYLAVDNRFIAVTVYAAGMALLTMVMGNAFAAFPIITAGIGIPILVLQHGGNPAVMAAIGMFSGYCGTLMTPMAANFNIVPA 302
                 *************************************************************************************************** PP

      DUF979 277 allelkdkyavikaQiptalvllvvnivlmyllaf 311
                 allel+d++avikaQ+pt+++ll+vni+l+y+l+f
  EHU01517.1 303 ALLELPDRNAVIKAQVPTGVLLLIVNIFLLYFLMF 337
                 *********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2366.21
//
Query:       EHU01518.1  [L=215]
Description: pyrrolidone-carboxylate peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-83  279.0   0.1    3.4e-83  278.8   0.1    1.0  1  Peptidase_C15  Pyroglutamyl peptidase


Domain annotation for each model (and alignments):
>> Peptidase_C15  Pyroglutamyl peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.8   0.1   1.9e-87   3.4e-83       2     200 ..       3     201 ..       1     203 [. 0.99

  Alignments for each domain:
  == domain 1  score: 278.8 bits;  conditional E-value: 1.9e-87
                    EEEEEEE---TT-S--HHHHHHHHHTT-EETTEEEEEEEE-SSTTHHHHHHHHHHHHH--SEEEEEEE-TT--SEEEE-EEES-BE-SS--TTS-- CS
  Peptidase_C15   2 kvLvtGfdPfgkekinPaleavkeLdgaeiaeativkrevPtvfkksadvlkkaiaeikpdivlaiGqagGrsaitvervainldDaripDnegkq 97 
                     vL+t f+Pfg+e+inP+++av  L+g++ia+a+iv+r++P+vf+++ dvl +a++ i+pd+v+a+GqagGrs itver+ in+dDaripDn+g+q
     EHU01518.1   3 TVLMTAFEPFGGESINPSWQAVSALEGQTIAGARIVTRQLPVVFSEVLDVLYQALETIRPDAVIAVGQAGGRSDITVERIGINVDDARIPDNAGRQ 98 
                    59********************************************************************************************** PP

                    -ESB-SSTTS-SEEE--S-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHHHS--SEEEEEEE-B-GGGTHHHHHT-B--HHHHHHHHH CS
  Peptidase_C15  98 lidepispdgeaaYfstlPvkamvkalkeaGvPaavsntaGtfvCnhllYqvlylldkklpevraGfihiPylpeqvidkpetpslsldkevagvk 193
                    ++depi +dg+a Yfs+lP+ka+v+a++eaG+Pa+vs+taGtf Cn ++Y++l+ l+ ++ ++r+GfihiPylpeq++++p++ps++  + ++++k
     EHU01518.1  99 PVDEPIVQDGPAGYFSRLPIKAIVAAVREAGIPASVSQTAGTFTCNRVMYGLLHWLESNGSPARGGFIHIPYLPEQAVHHPGAPSMTAATVIEALK 194
                    ************************************************************************************************ PP

                    HHHHHHH CS
  Peptidase_C15 194 aaieaiv 200
                    +a+++ +
     EHU01518.1 195 IAVQTTL 201
                    ***9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1668.86
//
Query:       EHU01519.1  [L=262]
Description: endonuclease VIII [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-13   50.7   0.0    2.3e-13   50.0   0.0    1.4  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    4.4e-10   40.2   0.0    8.4e-10   39.3   0.0    1.4  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    2.1e-05   24.3   4.9    5.6e-05   22.9   4.9    1.8  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
  ------ inclusion threshold ------
      0.063   13.2   0.0       0.13   12.2   0.0    1.5  1  DUF1778         Protein of unknown function (DUF1778)


Domain annotation for each model (and alignments):
>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0     5e-17   2.3e-13       1      88 [.     126     216 ..     126     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 5e-17
                 ---BTTSTTS-HHHHHHHHHT-...-SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTTG CS
        H2TH   1 Lgpeplseaftvdalaerlkkk...krkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgksg 88 
                 +gp+ l+ + tvda++erl +    +r    lLLDq+  aGlGN  + E+L+ a++ P++ a+sls+++l + ++++ +v ++a ++ ++ 
  EHU01519.1 126 IGPDVLNAELTVDAVRERLCSPrfcRRRFSGLLLDQAFLAGLGNYLRAEILWLAQLLPRHNAQSLSEAQLTAFCEALLSVPRHAYRMRGTM 216
                 79****************9886566999****************************************************99999987765 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   1.9e-13   8.4e-10       1     107 [.       1     104 [.       1     107 [. 0.85

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.9e-13
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTSTHHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS...........TT CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrgspaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllikeaeeepp...kh 92 
                     MPE pE+ +v+ +l+ +++g+ +++v +   +    + ++ + al g+++as++ rGK ll ++++g +l  h ++ G ++i   ++ +p   + 
      EHU01519.1   1 MPEGPEIRRVADQLEVAVVGQPLTDVWF-AFP----ELKTYEPALLGEQVASMETRGKALLTHFSNGLTLYSHNQLYGVWRI-VPPDMQPetkRQ 89 
                     **************************99.333....45558899************************************99.444444445468 PP

                     EEEEEEEGGGEEEEE CS
  Fapy_DNA_glyco  93 tkvrlelddgtelaF 107
                      +vrl ++++  l +
      EHU01519.1  90 LRVRLATANQAILLY 104
                     888888888777766 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   4.9   1.2e-08   5.6e-05       1      28 [.     234     261 ..     234     262 .] 0.97

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.2e-08
                   TSB-TTT--BBEEEECTTEEEEE-TTTT CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCq 28 
                   G+ C+RC+ +ie+ +++ r  y+Cp Cq
    EHU01519.1 234 GKTCRRCGEVIEKGVLSARPFYWCPGCQ 261
                   899************************* PP

>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.13      39      79 ..     180     220 ..     179     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
     DUF1778  39 kviedherieLseedfqafvaaLdeppkpnprLlkaarrlk 79 
                 + + +h+  +Lse++ +af +aL + p++  r++ +++++ 
  EHU01519.1 180 QLLPRHNAQSLSEAQLTAFCEALLSVPRHAYRMRGTMKKYH 220
                 567789999****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2047.85
//
Query:       EHU01520.1  [L=195]
Description: hypothetical protein CKS_3781 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-21   77.2   0.0    2.6e-21   76.8   0.0    1.2  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
     0.0021   18.0   0.2      0.006   16.5   0.1    1.7  2  CNP1            CNP1-like family


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   2.9e-25   2.6e-21       1     138 []       9     149 ..       9     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 2.9e-25
  Acetyltransf_3   1 RLlLrplteeDleal.felrsdpevmry....lpepltleeaeewlera.waeeseeegygwaivlkdtg.v.iGsvglrdleeedeeaelgyml 87 
                     RL L pl+ +D++a+    + ++e++ry    +p+p+++  a+++++++ + + ++++g+ w+++ k  + + iG++ l + +++    + g++l
      EHU01520.1   9 RLRLKPLSLKDADAMqI-AFPRWEIVRYlidsVPWPYPEGGARDYIANVaLPAVAAGTGWYWTLRPKTAEqQlIGVICLMETPDN----NRGFWL 98 
                     9**************44.5999*****99******************98866667778899999653332456****99988887....57**** PP

  Acetyltransf_3  88 apsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                      p+++g+Gy+tea+ a+++y+f++l+ + l+   ++ N++S+++    G++
      EHU01520.1  99 VPEWQGQGYMTEACLAVTDYWFTDLKKPLLRTPKAALNQRSVNISVNSGMR 149
                     *********************************************999985 PP

>> CNP1  CNP1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.31   2.8e+03      18      38 ..      18      38 ..       8      42 .. 0.63
   2 !   16.5   0.1   6.7e-07     0.006      64     110 ..     141     187 ..     132     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.31
        CNP1 18 qdedlvefdvsaasqlkfavD 38
                +d+d++++   + + +++++D
  EHU01520.1 18 KDADAMQIAFPRWEIVRYLID 38
                555666666655566666665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 6.7e-07
        CNP1  64 nvsy.eGirCataerklYatgrkdnkrWikaraaeWqrieeseanrlr 110
                 n+s+  G+rC  +e+k Y  g +d++ W  + ++eWq  + s++++++
  EHU01520.1 141 NISVnSGMRCIRTEKKQYVSGTHDSQLWE-VTREEWQAFRASQTSAVH 187
                 5555259*****************77775.56689***9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1512.57
//
Query:       EHU01521.1  [L=427]
Description: citrate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.4e-132  440.5   0.1   5.2e-132  440.3   0.1    1.0  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.3   0.1  2.9e-136  5.2e-132       1     361 []      46     410 ..      46     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 440.3 bits;  conditional E-value: 2.9e-136
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavsa 97 
                   g++++a++e++i+++dg++g+l++RG++i++La  +s++ ev+y Ll+ge Ptk++++efk++++++++++e++++ +  +++d+hpmav+  ++ a
    EHU01521.1  46 GFTSTASCESKITFIDGDEGILLHRGFPIDQLA-THSNYLEVCYILLNGEAPTKAQFEEFKQTVTRHTMIHEQITRLFHGFRRDSHPMAVMCGVTGA 141
                   68899****************************.7************************************************************** PP

                   HHHHSTTCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.--.---TTSSHHHHHHHHHHS.....S---HHHHHHHHHHHHHHS--SSSHHH CS
  Citrate_synt  98 lsaddeeseakeeseeaalrdalkliAklptiaaaiyrarlgrepl.epddklsyaenflymlrg.....kkpdeeeaklldlalvlhaDHelnaST 188
                   l+a++++s + +  +++++  a +l++k+pt+aa++y+++ g+ p+ +p+++lsya nfl+m+++     +k ++ +++++d++l+lhaDHe+naST
    EHU01521.1 142 LAAFYHDSLDVNIERHREIA-AFRLLSKMPTMAAMCYKYSIGQ-PFvYPRNDLSYAGNFLHMMFAtpceeYKVNPVLERAMDRILILHADHEQNAST 236
                   *****994444443444444.566*****************97.777***99***********98899999************************** PP

                   HHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTT.S--TTBC-SSSSS--HHHHHHHHHHHHHHTC.HT CS
  Citrate_synt 189 faarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakek.erlpGfGHrvykksDpRakilkelaeelaee.kg 283
                    ++r ++S++a+++++iaagi++l+Gp hgganea+l+mleei++ e  ++e+++++++k++  rl+GfGHrvyk++DpRa++++e ++e+ +e + 
    EHU01521.1 237 STVRTAGSSGANPFACIAAGIASLWGPAHGGANEACLRMLEEISTVE-HIPEFVRRAKDKNDsFRLMGFGHRVYKNYDPRATVMRETCHEVLNElGM 332
                   *******************************************9998.***********9977*******************************999 PP

                   HHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHH.HT------E CS
  Citrate_synt 284 kdpllklaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileql.adnkiiRPr 361
                   kd+ll++a ele +a +++++ e ++lypNvDfysg++++a+gip+++ftv+fa++R++Gw+Ah+ e   +  ki RPr
    EHU01521.1 333 KDDLLEVALELEHIALNDPYFIE-RKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWKEMHdEGMKIARPR 410
                   999********************.*******************************************7666689****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3650.01
//
Query:       EHU01522.1  [L=65]
Description: succinate dehydrogenase cytochrome b-556 subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-13   49.0   2.3    6.2e-13   48.8   2.3    1.0  1  Sdh_cyt         Succinate dehydrogenase/Fumarate reductase tr
     0.0073   16.4   1.3     0.0081   16.3   1.3    1.1  1  Fumarate_red_D  Fumarate reductase subunit D


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   2.3   6.9e-17   6.2e-13      66     120 ..       5      59 ..       1      60 [. 0.89

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 6.9e-17
     Sdh_cyt  66 piklilllllllallyHllnGiRhllwDlglgl.elesarksalavlalavalvlv 120
                  +k+i+ +++l al+yH++ GiRh+l+D+g+ + +le++++sa+++++++v+l+++
  EHU01522.1   5 FVKFIM-WGILTALAYHTVGGIRHMLMDFGYLAeTLEAGKRSAQVTFGITVVLSIL 59 
                 355555.**************************999*****************997 PP

>> Fumarate_red_D  Fumarate reductase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.3   9.1e-07    0.0081      58     113 ..       4      64 ..       1      65 [] 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.1e-07
  Fumarate_red_D  58 wigklvllvviilplwhalhrihhglhdlk.....ihvkkaaklifYglAallsvvalill 113
                     +++k+++++++  +++h++  i+h+l d++     ++++k++  +++g+ ++ls++a +l+
      EHU01522.1   4 FFVKFIMWGILTALAYHTVGGIRHMLMDFGylaetLEAGKRSAQVTFGITVVLSILAGVLV 64 
                     789*************************974444467788999*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 539.01
//
Query:       EHU01523.1  [L=115]
Description: succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-05   23.6  12.6      5e-05   23.3  12.6    1.2  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem
  ------ inclusion threshold ------
        1.2    7.3  10.3        1.4    7.1  10.3    1.0  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3  12.6   5.6e-09     5e-05      19     117 ..      12     101 ..       2     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.6e-09
     Sdh_cyt  19 gawlsilhritGvallv.glllllvwlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllwD.lglglelesarksalavlalav 115
                 g   ++l r +++++++ ++++l ++     + ++  +++ +  ++as ++++  ll l++ l+H+++G+  +l D +      +s  ++ l+ l+++v
  EHU01523.1  12 GIQDWLLLRASAILITLyIIYMLGFV-----VMTDTLTYDIWRGFFASAFTKVFTLLTLFSILIHGWIGMWQVLTDyV------KSLAARLLLQLVIVV 99 
                 5678*************666666644.....456779***********9*****9*********************44......444444444444444 PP

     Sdh_cyt 116 al 117
                 al
  EHU01523.1 100 AL 101
                 33 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  10.3   0.00015       1.4      43     131 ..      24     110 ..       2     114 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00015
     DUF2070  43 lfglpalvaflltlpvlrilggr.ltykrslflalltelivviisllaillsall.qalvllalvlslalvfalrllvlvavsdesllkav 131
                 +++  +++++l +  + ++     +++ r +f +++t ++ ++ +l++il+  ++ +  vl  +v sla+ + l+l+++va+ ++ +   v
  EHU01523.1  24 ILITLYIIYMLGFVVMTDT---LtYDIWRGFFASAFTKVFTLL-TLFSILIHGWIgMWQVLTDYVKSLAARLLLQLVIVVALLSYAIYGFV 110
                 2222233333333222222...225555669999999999999.55566666666688899999999999999999999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 943.27
//
Query:       EHU01524.1  [L=588]
Description: succinate dehydrogenase, flavoprotein subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.9e-119  397.6   5.7   8.7e-119  397.3   5.7    1.1  1  FAD_binding_2   FAD binding domain
      7e-35  119.8   0.4    1.2e-34  119.1   0.4    1.4  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    6.6e-06   25.6   1.1    0.00037   19.8   0.3    2.8  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.4e-05   22.4   3.2     0.0023   17.1   1.1    2.3  2  GIDA            Glucose inhibited division protein A
     0.0039   16.0   3.6     0.0051   15.6   0.2    2.6  3  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.023   13.9   0.2       0.85    8.8   0.1    2.3  2  Thi4            Thi4 family
      0.034   13.7   3.3       0.21   11.2   3.3    2.2  1  DAO             FAD dependent oxidoreductase
        1.6    8.0   8.1        3.1    7.1   5.0    2.6  2  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.3   5.7  3.9e-122  8.7e-119       1     417 []       9     405 ..       9     405 .. 0.98

  Alignments for each domain:
  == domain 1  score: 397.3 bits;  conditional E-value: 3.9e-122
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D++ViG+G+AG++AAl++++ G+++a+++k+++++++t+ +qGgi ++l +++     +d++e+h++dt+k++d+ +dq+++e++++ +pea+ eL
     EHU01524.1   9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTH-----DDNWEWHMYDTVKGSDYIGDQDAIEYMCHVGPEAILEL 99 
                    89***********************************************4444.....7************************************* PP

                    HHTT----BCCTSSB-EEE-TT-SST......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT.EEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedg.rvtGavvenpesg 185
                    e++g+pfsr +dg+v++r++Gg+s++      art++ aad+      tghall++l+++ +k++++++ +++a++L+ +d+  ++G+++ ++e+g
     EHU01524.1 100 EHMGLPFSRLDDGRVYQRPFGGQSKNfggeqaARTAA-AADR------TGHALLHTLYQQNLKNKTTIFSEWYALDLVKNDDdAIVGCTAICMETG 188
                    *******************************999999.***9......*******************************7666************* PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    ++v ++aka++latgG+gr           +++ttna+++tGdg ++alrag++++d  me++qfhPt++     g+g+L+te++rgeGg+l++k 
     EHU01524.1 189 ETVYFKAKATILATGGAGR----------IYQSTTNAHINTGDGVGMALRAGVPVQD--MEMWQFHPTGIA----GAGVLVTEGCRGEGGYLLNKH 268
                    *******************..........****************************..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS.....CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......E CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs.....eanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkv 365
                    G+rFm       ++la rdvv+r+++  ei+eg++     ++++ l ++h l+ae le++l++i e  +++++      +dp ++pip       v
     EHU01524.1 269 GERFMeryapnaKDLAGRDVVARSMM-VEIREGRGcdgpwGPHIKLKLDH-LGAEVLESRLPGILELSRTFAH------VDPIKEPIP-------V 349
                    **************************.***********************.**********************......*********.......* PP

                    EEEEEEES-EEEBETTSBE....STTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 366 vpaqhytmgGvetdengrv....ldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                     p++hy+mgGv+t  +g++     + ++++ipGL+A+Ge a+++vhganrlgGnsl
     EHU01524.1 350 IPTCHYMMGGVPTKVTGQAlrvnAQGEDEVIPGLFAVGEIACVSVHGANRLGGNSL 405
                    *******************8888788999*************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.4   5.3e-38   1.2e-34       1     128 []     460     588 .]     460     588 .] 0.94

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 5.3e-38
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-S CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwl 95 
                     rk+L+++mq++++vfR+++ ++e+l+elk +rerlk  +++d+s  +N++ +e+lel+nl+e+A a+a++A  R+ESrGaH r d+perdD+nwl
      EHU01524.1 460 RKALQRCMQNNFSVFREGDAMREGLEELKVIRERLKSARLDDRSPDFNTQRIECLELDNLMETAYATAVAANFRTESRGAHSRFDYPERDDANWL 554
                     799******************************************************************************************** PP

                     EEEEE...TT-SS-EEEEEE--GGG-.....-S---SS CS
  Succ_DH_flav_C  96 khtlasldaakeeveleyepveletl.....kpkeRsY 128
                      h+l+      ++ +++ ++v++++      +pk+R+Y
      EHU01524.1 555 CHSLYVP----QTESMTRREVNMQPKlraafPPKARTY 588
                     *****43....34577888888887777888*****99 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   1.7e-07   0.00037       2     112 ..       9     207 ..       8     255 .. 0.74
   2 ?    3.1   0.0     0.021        47     249     279 ..     359     395 ..     351     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.7e-07
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH...................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias...................................... 57 
                  d vviG+G AG++aal+++q+g   +l++     + +++  +  ++ al ++ +d  + +                                      
   EHU01524.1   9 DAVVIGAGGAGMRAALQISQSGQTCALLSkvfpTRSHTVSAQGGITVALGNTHDDNWEWHmydtvkgsdyigdqdaieymchvgpeailelehmglpf 106
                  78**************************6666655666666666666666666666555588888888888888888888899999999999999999 PP

                  .......................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.............TCEEEEEESEE CS
                  .......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxx RF
  Pyr_redox_2  58 .......................................evvkklnqgielllgeevvkidpgkkkvklekkke.............gdeekiaydkl 103
                                                                + ++  l+ ++++i  ++  + l k+++             g++  +++++ 
   EHU01524.1 107 srlddgrvyqrpfggqsknfggeqaartaaaadrtghalL-----HTLYQQNLK-NKTTIFSEWYALDLVKNDDdaivgctaicmetGETVYFKAKAT 198
                  9999999999999977777777777777665555433221.....222333344.7888888887777766666788888888887777777788899 PP

                  EE---EEE- CS
                  xxxxxxxxx RF
  Pyr_redox_2 104 vlAtGsspr 112
                  +lAtG+  r
   EHU01524.1 199 ILATGGAGR 207
                  999997555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.021
                  T-EEEETTEE.E--TTSBES.STTEEE-GGGC....T CS
                  xxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx....x RF
  Pyr_redox_2 249 glelderggi.vvdeflrtn.vpgiyaiGDva....g 279
                  g++++ +g+   v+ +++ + +pg++a+G +a    +
   EHU01524.1 359 GVPTKVTGQAlRVNAQGEDEvIPGLFAVGEIAcvsvH 395
                  556655554449*****9999*********9955551 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.1     1e-06    0.0023       1      29 [.       9      37 ..       9      60 .. 0.84
   2 !    5.0   0.0    0.0047        10     110     159 ..     166     211 ..     123     227 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                d +ViG+G AG+ AAl+++++G   +L+ 
  EHU01524.1  9 DAVVIGAGGAGMRAALQISQSGQTCALLS 37
                579**********************9993 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0047
                 TEEEEES-EEEEEECTTEEEEEEETTS-E..EEECEEEE--TT-BT-EEEET CS
        GIDA 110 nleiieeeveeliveekkvkgvvtedget..ikakavviatGtflkgkihig 159
                  l+++++  + ++     ++++++e+get  +kaka+++atG   +g+i+  
  EHU01524.1 166 ALDLVKNDDDAIV----GCTAICMETGETvyFKAKATILATGG--AGRIYQS 211
                 3333333333332....366688888876225788*******9..6665543 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   2.3e-06    0.0051       2      31 ..       9      38 ..       8      64 .. 0.86
   2 ?   -0.7   0.0       0.2   4.4e+02     147     165 ..     187     205 ..     140     236 .. 0.75
   3 ?   -0.8   0.1      0.21   4.6e+02     372     388 ..     377     395 ..     355     417 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 d +viG+G AG+ aA+++++ g+  +ll k
   EHU01524.1  9 DAVVIGAGGAGMRAALQISQSGQTCALLSK 38
                 89**********************999977 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.2
                  E.TTEEEEESEEEE----S CS
  HI0933_like 147 tkseeeleadklvlAtGGl 165
                  t ++  ++a++++lAtGG+
   EHU01524.1 187 TGETVYFKAKATILATGGA 205
                  3344568999*******97 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.21
                  BTTSTTEEE-GGG..BSEE CS
  HI0933_like 372 skkvpgLffaGEv..lDve 388
                   + +pgLf +GE+  + v+
   EHU01524.1 377 DEVIPGLFAVGEIacVSVH 395
                  5679********8334444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00038      0.85      17      43 ..       7      32 ..       2      53 .. 0.83
   2 ?    2.5   0.0     0.032        71     207     232 ..     375     401 ..     361     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00038
                EEEEEEE--SHHHHHHHHHHHHCTTS- CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlk 43
                e D v++GaG +G+ aa  ++++ +  
  EHU01524.1  7 EFDAVVIGAGGAGMRAALQISQS-GQT 32
                789*****************998.444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.032
                 HECEEETTEEE-T.HHHHHHHT-EB-- CS
        Thi4 207 ktrevvpnlyvaG.mevaevdganRmG 232
                 +  ev+p+l++ G ++   v+ganR+G
  EHU01524.1 375 GEDEVIPGLFAVGeIACVSVHGANRLG 401
                 5679*****9887578999*******9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.3   9.2e-05      0.21       1      46 [.       9      56 ..       9     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.2e-05
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEES CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhs 46
                d v+iG+G +G+ +A++ ++ g   +ll k     s++ ++ +g+  +
  EHU01524.1  9 DAVVIGAGGAGMRAALQISQSGqtCALLSKVFPTRSHTVSAQGGITVA 56
                78*******************9********944445777777666544 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.0    0.0014       3.1       1      53 [.       9      68 ..       9     212 .. 0.61
   2 ?   -2.0   0.0      0.79   1.8e+03     152     248 ..     415     514 ..     411     560 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLve.......ergvlGGlltsglvatdignkaee 53
                  D vV+G+g aG+ AA++  ++G++ +L++        +    G  t +l++t + n+ ++
    EHU01524.1  9 DAVVIGAGGAGMRAALQISQSGQTCALLSkvfptrsHTVSAQGGITVALGNTHDDNWEWH 68
                  779************************984443322222233445555666666666555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.79
  FAD_oxidored 152 aGvpyrvGresreetgep......aagtlmfrlegveggeedekvqaynkrlcltskpenrvpfekkpegydparyelarvfeaklskgklpgektd 242
                   aGv      e+++e+ e       aa++++ r+e+    ++++ v+    r +l++  +n++ + ++ +++++  +el +v++ +l+  +l+++  d
    EHU01524.1 415 AGVHLLECLEEQGELREAsqenidAAMARFNRWENN--TTGEDPVE---IRKALQRCMQNNFSVFREGDAMREGLEEL-KVIRERLKSARLDDRSPD 505
                   555555555555555555322222233334444444..23333333...34455555544444445666666666666.565555666666666666 PP

  FAD_oxidored 243 vnwpr...v 248
                   +n +r    
    EHU01524.1 506 FNTQRiecL 514
                   666544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4472.82
//
Query:       EHU01525.1  [L=238]
Description: succinate dehydrogenase, FeS subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-32  110.0   0.0    7.8e-32  109.5   0.0    1.2  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    4.7e-10   39.9   1.5    8.4e-10   39.0   1.5    1.4  1  Fer4_17   4Fe-4S dicluster domain
    3.5e-08   33.8   3.9    4.1e-07   30.3   4.5    2.1  2  Fer4_8    4Fe-4S dicluster domain
    1.9e-07   31.1   1.9    3.7e-07   30.2   1.9    1.5  1  Fer4_10   4Fe-4S dicluster domain
    0.00062   20.3   6.3     0.0041   17.7   6.9    2.0  2  Fer4_7    4Fe-4S dicluster domain
     0.0032   17.6   3.9     0.0032   17.6   3.9    2.2  2  Fer4_9    4Fe-4S dicluster domain
     0.0048   17.1   2.2        1.3    9.3   0.0    2.5  3  Fer4_18   4Fe-4S dicluster domain
  ------ inclusion threshold ------
       0.44   10.5  13.7       0.54   10.2   0.5    2.6  2  Fer4      4Fe-4S binding domain
       0.52   11.0   9.5        7.9    7.3   0.4    2.6  2  Fer4_4    4Fe-4S binding domain
          4    7.7  11.3       0.59   10.3   0.5    2.5  2  Fer4_6    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   4.4e-35   7.8e-32       2     108 ..       5     111 ..       4     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 4.4e-35
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveae..eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvir 98 
                 ++++R++p+ d+ k+++q+y++eae  +++++ldaL ++ke+ dptlafr+sCreg+CGs+++++nGk+ laC + +++l + k++i ++plp++pv+r
  EHU01525.1   5 FSIYRYNPDVDD-KPRMQDYSLEAEdgRDMMLLDALIRLKEK-DPTLAFRRSCREGVCGSDGLNMNGKNGLACITPVSALGNGKQKIVIRPLPGLPVVR 101
                 78******7766.***********9777899*********98.8***************************************99************** PP

      Fer2_3  99 DLvvDideml 108
                 DLvvD+++++
  EHU01525.1 102 DLVVDMSQFY 111
                 *******996 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   1.5   4.7e-13   8.4e-10       1      61 []     148     221 ..     148     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 4.7e-13
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl..........glleeaekeekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cps+++++++   p+ ll+a+++          ++l++ ++   + +C+++ +C+++CP+gl+
  EHU01525.1 148 ECILCACCSTSCPSFWWNPDKfigPAGLLAAYRFiidsrdtetdARLDNLSDAFSVFRCHSIMNCVSVCPKGLN 221
                 6******************977779999999888888877666556666666689****************996 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   3.3   7.8e-06     0.014      43      63 ..     141     161 ..      98     163 .. 0.73
   2 !   30.3   4.5   2.3e-10   4.1e-07       2      64 ..     146     219 ..     145     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.8e-06
      Fer4_8  43 eeeealwsCttcgaCtevCpv 63 
                 e  ++l++C  c +C++ Cp 
  EHU01525.1 141 EHLDGLYECILCACCSTSCPS 161
                 22578**************96 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 2.3e-10
      Fer4_8   2 lekCieCgaCqsaCp............vlrrtk.khlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 l++Ci C +C ++Cp            +    + +++ d+r+  ++   + ++l+++ ++++C++ ++C++vCp+g
  EHU01525.1 146 LYECILCACCSTSCPsfwwnpdkfigpAGLLAAyRFIIDSRDTETD--ARLDNLSDAFSVFRCHSIMNCVSVCPKG 219
                 578***********86555555555554444444888888888666..45555567899***************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   1.9   2.1e-10   3.7e-07       8      56 .]     148     217 ..     144     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.1e-10
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C ++CP+ +                     +++  ++++ ++  +   v +C+ + +Cv++CP
  EHU01525.1 148 ECILCACCSTSCPSFWwnpdkfigpagllaayrfiidSRDTETDARLDNLSDAFSVFRCHSIMNCVSVCP 217
                 5*************99********************9999*****************************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   4.2     0.004       7.2      35      50 ..     146     161 ..     118     163 .. 0.75
   2 !   17.7   6.9   2.3e-06    0.0041       2      51 ..     149     219 ..     148     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.004
      Fer4_7  35 pekClgCgaCvavCPt 50 
                   +C+ C  C + CP+
  EHU01525.1 146 LYECILCACCSTSCPS 161
                 4579999999999996 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.3e-06
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek......gtekv..................eidpekClgCgaCvavCPtg 51 
                 Ci C  C   Cp+ + + d++  ++      +                      +++  +C +  +Cv+vCP+g
  EHU01525.1 149 CILCACCSTSCPSFWWNPDKFIGPAgllaayR---FiidsrdtetdarldnlsdAFSVFRCHSIMNCVSVCPKG 219
                 *****************999777773333330...0333333344555566666777789************98 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.9   8.7e+03      12      19 ..      55      62 ..      52      77 .. 0.51
   2 !   17.6   3.9   1.8e-06    0.0032       1      49 [.     148     219 ..     148     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.9
      Fer4_9 12 Cpagvvve 19
                C  gv+  
  EHU01525.1 55 CREGVCGS 62
                44444333 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.8e-06
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase.......................eaCigCgaCveaCpkg 49 
                 +C+ C  C ++Cp+  +++d++ + a l aa                          +C++ + Cv +Cpkg
  EHU01525.1 148 ECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRfiidsrdtetdarldnlsdafsvFRCHSIMNCVSVCPKG 219
                 5***********77777777776666654433367777777777799999******99************98 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.3   7.7e+03      71      92 ..      55      76 ..      53      82 .. 0.72
   2 !    9.3   0.0    0.0007       1.3      48      73 ..     136     161 ..      98     163 .. 0.69
   3 !    7.3   0.0     0.003       5.4      50      75 ..     195     220 ..     180     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
     Fer4_18 71 cPtgidirkGlqleciscllci 92
                c  g+   +Gl ++  + l ci
  EHU01525.1 55 CREGVCGSDGLNMNGKNGLACI 76
                5666666788888888888887 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0007
     Fer4_18  48 kekeerkekgagdcidcescvkvcPt 73 
                 +  e+++ +g  +ci c  c + cP 
  EHU01525.1 136 TPGEREHLDGLYECILCACCSTSCPS 161
                 334556678999************95 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.003
     Fer4_18  50 keerkekgagdcidcescvkvcPtgi 75 
                  ++  + ++  c +   cv+vcP g+
  EHU01525.1 195 DNLSDAFSVFRCHSIMNCVSVCPKGL 220
                 4555566677899999*******997 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   7.1      0.04        71       7      19 ..     148     160 ..     147     161 .. 0.93
   2 ?   10.2   0.5    0.0003      0.54       7      21 ..     205     219 ..     202     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.04
                 TSSS-THHHHHST CS
        Fer4   7 kCigCGaCvevCP 19 
                  Ci C  C   CP
  EHU01525.1 148 ECILCACCSTSCP 160
                 5************ PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0003
                 TSSS-THHHHHSTTT CS
        Fer4   7 kCigCGaCvevCPvg 21 
                 +C   ++Cv+vCP g
  EHU01525.1 205 RCHSIMNCVSVCPKG 219
                 699999*******76 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.2    0.0069        12       3      15 ..     148     160 ..     146     173 .. 0.92
   2 ?    7.3   0.4    0.0044       7.9       5      16 ..     204     218 ..     204     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0069
      Fer4_4   3 rCigCgsCvaaCP 15 
                  Ci C +C  +CP
  EHU01525.1 148 ECILCACCSTSCP 160
                 6************ PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0044
      Fer4_4   5 igCgs...CvaaCPq 16 
                 ++C s   Cv++CP 
  EHU01525.1 204 FRCHSimnCVSVCPK 218
                 57887777******6 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   4.6       0.3   5.3e+02       9      20 ..     149     160 ..     149     167 .. 0.95
   2 ?   10.3   0.5   0.00033      0.59       8      22 ..     205     219 ..     205     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.3
      Fer4_6   9 CigCgdCvrvCP 20 
                 Ci C  C + CP
  EHU01525.1 149 CILCACCSTSCP 160
                 ************ PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00033
      Fer4_6   8 kCigCgdCvrvCPeg 22 
                 +C + ++Cv+vCP g
  EHU01525.1 205 RCHSIMNCVSVCPKG 219
                 688889*******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1801.85
//
Query:       EHU01526.1  [L=935]
Description: 2-oxoglutarate decarboxylase, thiamin-requiring [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-66  223.8   0.0    1.9e-66  223.1   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
      3e-54  182.8   0.0    5.3e-54  182.0   0.0    1.4  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    1.2e-49  168.9   0.0    1.9e-49  168.3   0.0    1.2  1  E1_dh            Dehydrogenase E1 component
    2.7e-16   58.9   0.4    1.6e-15   56.4   0.1    2.3  2  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
     0.0035   17.6   0.0     0.0094   16.2   0.0    1.7  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.1   0.0   5.3e-70   1.9e-66       2     178 .]     592     787 ..     591     787 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.1 bits;  conditional E-value: 5.3e-70
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEE CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqF 81 
                   + +w  ae++a+a+l++e+  v+l+g+D+++gtf +r+++ h+q                 e++v+ds +sE+avl+f++G+a+a+p  l+i+eaqF
    EHU01526.1 592 AFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQTngstytplhhihnsqgEFKVWDSVLSEEAVLAFEYGYATAEPrVLTIWEAQF 688
                   579********************************************************************************************** PP

                   HHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT..EEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  82 gdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg..lkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   gdFangAq+++dq+i+sge+k+++++g+v++lp+g++++Gpeh+sa+le++l+l+++  ++v++Ps+pa+++h+lrr++ r  r+P+v++ pksllr
    EHU01526.1 689 GDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEqnMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLR 785
                   *******************************************************9999**********************99************** PP

                   .T CS
  Transket_pyr 177 hk 178
                   h+
    EHU01526.1 786 HP 787
                   85 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   1.5e-57   5.3e-54       2     152 .]     791     932 ..     790     932 .. 0.96

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 1.5e-57
  OxoGdeHyase_C   2 SsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEpkNq 97 
                    Ssl+ela+g sFq+ + + ++    +p+ +krvvlcsGkvyydLl++r+k+ek +dvaivriEqlyPfp+++++e+l+ Y++++++vW+QeEp Nq
     EHU01526.1 791 SSLDELANG-SFQPAIGEIDD---LDPQGIKRVVLCSGKVYYDLLEQRRKDEK-TDVAIVRIEQLYPFPHQAVQEALKAYSHVQDFVWCQEEPLNQ 881
                    99*******.*********99...46***********************8866.9***************************************** PP

  OxoGdeHyase_C  98 GawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152
                    Gaw++ ++++++v+        +lry+gr+asaspA+G+++vh+++q++l+++a+
     EHU01526.1 882 GAWYCSQHHFRDVVP----FGATLRYAGRPASASPAVGYMSVHQQQQQDLVNDAL 932
                    **************8....3578*****************************997 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.0   5.3e-53   1.9e-49      14     281 ..     220     512 ..     208     518 .. 0.84

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 5.3e-53
                 HHHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T...TTSSGTT-..-E....BTT.....BEE CS
       E1_dh  14 dalykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv...kgkggsrh.elm..yaekes...rilg 98 
                  a++   kr++++   a+ + l  +i +a + +  ++++ + +R++ ++l+++l    + ++ e+ gk     g g++++  +   + e+e    ++  
  EHU01526.1 220 GAKFPGAKRFSLEGGDALVPMLREMIRHAGKSGtrEVVLGMaHRGRLNVLINVLGkkPQDLFDEFSGKHkehLGTGDVKYhMGFssDIETEGglvHLAL 318
                 566666788888888888899988898888887778888666*******99988766999********9555455556663222111222211225566 PP

                 E-SSTTTH..HHHHHHHHHHHH.....HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTE.EHHHH-S---GGG..TTT CS
       E1_dh  99 gngivgaq..vplvaGialaak.....iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisT.eaekasaskeladrargv 185
                 + ++++++  +p+v G+++a          +k++ i+++GD+A  +qG v e+ln++++ ++ v   + +v NN+ g++T +++ a+++++ +d ++ v
  EHU01526.1 319 AFNPSHLEivSPVVMGSVRARLdrlaePVSNKVLPITIHGDAAvIGQGVVQETLNMSQARGYEVggtVRIVINNQVGFTTsNPKDARSTPYCTDIGKMV 417
                 66677776667777788888767777666789999*********************************************778889999********** PP

                 TS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHH CS
       E1_dh 186 gipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevr 281
                  +p+++V+++Dp+av  +++ A ++++++k+++ i+lv+YR++gH+e D+ps+++ + ++++++k+++p ++++++L ++gv+s+e   e+ + +r
  EHU01526.1 418 LAPIFHVNADDPEAVAFVTRLALDYRNTFKRDVFIDLVCYRRHGHNEADEPSATQ-PLMYQKIKKHPTPRKIYADRLESEGVASQEDATEMVNLYR 512
                 *******************************************************.******************************9999877666 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.1   4.6e-19   1.6e-15       1      39 [.      12      50 ..      12      52 .. 0.96
   2 ?   -0.3   0.0      0.22     8e+02      25      40 ..      57      72 ..      54      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 4.6e-19
  2-oxogl_dehyd_N  1 dsfLsgtnaaYiEelYeayleDPsSVdesWrayFknled 39
                     +s+L+g+n++YiE+lYe +l DP+SVd+ Wr+ F++l++
       EHU01526.1 12 SSWLAGANQSYIEQLYEDFLTDPDSVDAVWRSMFQQLPG 50
                     69**********************************986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.22
  2-oxogl_dehyd_N 25 SVdesWrayFknledg 40
                       +++ r+yF+ l ++
       EHU01526.1 57 QFHSATREYFRRLAKD 72
                     558889******9875 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06    0.0094      21      55 ..     834     868 ..     819     872 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
                 HHHHTT--EEEEEES--BS--HHHHHHHSTT-SEE CS
     PFOR_II  21 elReegikvGllrlrtlrPFPeeelkellkkvkkv 55 
                 + ++e+ +v ++r+  l+PFP+++++e+lk ++ v
  EHU01526.1 834 RRKDEKTDVAIVRIEQLYPFPHQAVQEALKAYSHV 868
                 45678899*********************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6855.52
//
Query:       EHU01527.1  [L=407]
Description: dihydrolipoyltranssuccinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-81  273.6   0.0    1.5e-81  273.3   0.0    1.1  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    6.8e-19   67.5   0.4    1.5e-18   66.3   0.4    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme
    5.7e-13   49.0   1.6    1.3e-12   47.9   0.1    2.2  2  E3_binding       e3 binding domain
     0.0092   15.8   0.1        0.8    9.6   0.0    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
       0.15   12.0   0.7        1.3    8.9   0.2    2.4  2  GCV_H            Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.3   0.0   4.3e-85   1.5e-81       3     233 .]     177     405 ..     175     405 .. 0.99

  Alignments for each domain:
  == domain 1  score: 273.3 bits;  conditional E-value: 4.3e-85
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--E CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvni 99 
                   +e+rvp++++rk++a+rl e+k++++++t+++e++++ +++lrk++ e+++k++ ++l +++f+ikav+ Alk++Pe+nas+d+e+  +v++++ ++
    EHU01527.1 177 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEINMKPIMDLRKQYGEAFEKRHGVRLGFMSFYIKAVVEALKRYPEVNASIDGED--VVYHNYFDV 271
                   789***********************************************98888*******************************..********* PP

                   EEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT--- CS
  2-oxoacid_dh 100 GvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrk 196
                   ++Av+tprGL++Pv++++d++s+++i+k++kela k r+gkl+ +dl+gg+fti+N G++G+ ++tPiinppq+aIlg+++ik+rp++++g++v+ +
    EHU01527.1 272 SIAVSTPRGLVTPVLRDVDALSMADIEKKIKELAVKGRDGKLTVDDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVVILP 368
                   ************************************************************************************************* PP

                   EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXXX CS
  2-oxoacid_dh 197 vmtlslsaDHRvidGaeaarFlntlkkllenpeelll 233
                   +m+l ls+DHR+idG e + +l ++k++le+p++lll
    EHU01527.1 369 MMYLALSYDHRLIDGRESVGYLVAVKEMLEDPARLLL 405
                   **********************************985 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.4   4.3e-22   1.5e-18       2      72 ..       5      76 ..       4      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 4.3e-22
                   EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72
                   +i +P++ esv+++ v+++++k+Gd+V+ ++v++e+e++K++ e++a ++Gv++ +l +eG+tv++ ++l +
     EHU01527.1  5 DILVPDLPESVADAtVATWHKKPGDAVSRDEVIVEIETDKVVLEVPASADGVLEAVLEEEGATVTSRQILGR 76
                   6889*************************************************************9999976 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   3.5e-16   1.3e-12       3      36 .]     114     147 ..     113     147 .. 0.97
   2 ?   -0.7   0.1      0.51   1.8e+03      24      34 ..     307     317 ..     298     318 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.5e-16
                 E-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   3 AsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                 +sPa R+l++e+++d s++kGtG gGR+t+eDV+
  EHU01527.1 114 LSPAIRRLIAEHNLDASQIKGTGVGGRLTREDVE 147
                 7********************************7 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
                 -CTTTBE-HHH CS
  E3_binding  24 tGpgGRItkeD 34 
                  G++G +t +D
  EHU01527.1 307 KGRDGKLTVDD 317
                 699****9999 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00022       0.8      10      37 ..      17      44 ..      12      49 .. 0.89
   2 ?    3.4   0.0     0.019        69       4      35 ..      48      79 ..      45      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00022
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsra 37
                     +++Va+++ k G+ V    v++e+++++
       EHU01527.1 17 DATVATWHKKPGDAVSRDEVIVEIETDK 44
                     99**********************9876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.019
  Biotin_lipoyl_2  4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDs 35
                     ++ a+ +G++++++ ++G  V   ++L +l  
       EHU01527.1 48 EVPASADGVLEAVLEEEGATVTSRQILGRLKE 79
                     677899***************99999888876 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00037       1.3      34      74 ..      20      60 ..       7      74 .. 0.86
   2 ?    0.4   0.0      0.16   5.8e+02      52      71 ..     243     263 ..     241     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00037
                EEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H 34 vfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvev 74
                v+   ++ g++v+ +e +  +E+ K + ev+a  +G +  v
  EHU01527.1 20 VATWHKKPGDAVSRDEVIVEIETDKVVLEVPASADGVLEAV 60
                55567899****************************87654 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
                 EEEEESS-EEEEE-SSSEE.E CS
       GCV_H  52 aavEsvKaasevyapvsGe.v 71 
                 a+vE+ K+  ev a ++Ge v
  EHU01527.1 243 AVVEALKRYPEVNASIDGEdV 263
                 789***************834 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2966.37
//
Query:       EHU01528.1  [L=388]
Description: succinyl-CoA synthetase, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-83  276.9   0.0    1.2e-82  276.4   0.0    1.2  1  ATP-grasp_2  ATP-grasp domain
    1.6e-23   83.2   2.8    2.7e-23   82.5   2.8    1.4  1  Ligase_CoA   CoA-ligase
    1.4e-14   54.1   0.0    2.5e-14   53.3   0.0    1.4  1  ATP-grasp_5  ATP-grasp domain
     0.0015   18.4   0.0     0.0025   17.6   0.0    1.4  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
  ------ inclusion threshold ------
      0.049   13.2   0.0       0.08   12.5   0.0    1.3  1  ATP-grasp    ATP-grasp domain


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4   0.0   3.3e-86   1.2e-82       1     202 []       2     203 ..       2     203 .. 1.00

  Alignments for each domain:
  == domain 1  score: 276.4 bits;  conditional E-value: 3.3e-86
                  BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEE CS
  ATP-grasp_2   1 nlhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlve 98 
                  nlhEyqak+++a+yg+++p+g  +++++eaeeaa+k+g+  +vvK+Qv+aGGRGKagGvk+v+ske+++++a+++lgk+lvt+qt+++G++v+++lve
   EHU01528.1   2 NLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVE 99 
                  79************************************************************************************************ PP

                  E---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHTTEEEEE CS
  ATP-grasp_2  99 ealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfveldatlvE 196
                   a+di++ElYl++v+Dra+++v+++aS+eGGv+iE+va+++P+ i+k+a+dp +g +++q re+a+klgl++++v++++ki++ l ++f+e+d+ +vE
   EHU01528.1 100 AATDIDQELYLGAVVDRATRRVIFMASTEGGVEIEKVAEETPHLIHKMALDPLTGPQPYQGRELAFKLGLTGKQVSQFTKIFMGLATMFLERDLAMVE 197
                  ************************************************************************************************** PP

                  EEEEEE CS
  ATP-grasp_2 197 iNPLvv 202
                  iNPLv+
   EHU01528.1 198 INPLVI 203
                  ****96 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   2.8   7.7e-27   2.7e-23       1     152 [.     262     381 ..     262     382 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 7.7e-27
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 +vnG++La+ +md++k++              g+++++++d+G++a+          +++++ea+k++++d+ vk+++++i++G+++++ +a++++ a+
  EHU01528.1 262 MVNGAGLAMGTMDIVKHH--------------GGQPANFLDVGGGAT----------KERVTEAFKIILSDDAVKAVFVNIFGGIVRCDLIADGIIGAV 336
                 79****************..............***************..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraaka 152
                  e+     ++pvv+r++G++a+      +ak+l+++g++i+++   +++a+ +
  EHU01528.1 337 AEVG---VNVPVVVRLEGNNAE-----LGAKKLADSGLNIIAATSLTDAAQRV 381
                 ***7...***************.....9***************9999998876 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   6.9e-18   2.5e-14      10     219 ..       3     215 ..       1     217 [. 0.80

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 6.9e-18
  ATP-grasp_5  10 Lteaeakelleaygipvvetrlassaeeaveaaeeigy.pvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeil.ervkeks...peariegvlV 102
                  L e++ak+l++ yg+p++    ++++ ea eaa++ig+ p v+K+++     + ++gGv++ ++++e++ra ae+ l +r+ +++    ++ ++++lV
   EHU01528.1   3 LHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAgPWVVKCQVH-AGGRGKAGGVKV-VNSKEDIRAFAENWLgKRLVTYQtdaNGQPVNQILV 98 
                  89**********************************8638*****975.678999******.*********998755155555551225566888899 PP

  ATP-grasp_5 103 qemakrggrElivgvteDpvFGpvilfGl..GGtavevlkdvavalpplnstlareliertkas...kllkgvrgekkadlaaleellvrlsqLvvdl 195
                  +  ++   +El +g+  D     vi +    GG+++e +++     p l ++ a + +   + +   +l+ +   +  ++++++ ++ + l+ +  + 
   EHU01528.1  99 EAATD-IDQELYLGAVVDRATRRVIFMASteGGVEIEKVAEE---TPHLIHKMALDPLTGPQPYqgrELAFKLGLT-GKQVSQFTKIFMGLATMFLE- 190
                  99988.9******************99863366666655555...5666666666666555544110455554444.789***************99. PP

  ATP-grasp_5 196 peIreldinPllveeeg.vvalDar 219
                    ++ ++inPl+++++g +++lD++
   EHU01528.1 191 RDLAMVEINPLVITKQGdLICLDGK 215
                  89*************999*****87 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07    0.0025       6     104 ..       8     118 ..       4     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7e-07
                 HHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT....-EEEESSHHHHHHHHHHHC.......TS-TTCCCCSSEEEEE---.SE CS
      GARS_A   6 akdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagK....gvivakseeealkavkeil.......ekkkfGeagekvviEelle.Ge 92 
                 ak+l++++g+p+++  a t p ea+e  ++ +a  +VvK +  a+g+    gv+v++s+e+  + +++ l       ++ + G+  +++++E   +  +
  EHU01528.1   8 AKQLFARYGMPAPTGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRgkagGVKVVNSKEDIRAFAENWLgkrlvtyQTDANGQPVNQILVEAATDiDQ 106
                 79**************************************9999987334469****999999988887722222223345688888899988766346 PP

                 EEEEEEEECTTE CS
      GARS_A  93 Evsllalvdgkt 104
                 E+ l a+vd  t
  EHU01528.1 107 ELYLGAVVDRAT 118
                 777777777655 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05      0.08       4      78 ..      15     108 ..      12     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                 TT--B-EEEEECCHHHHHHHHHHH-S.CEEEEESSS.-CTTT..TEEEECTCCGHHCHHHHC...............GTTCEEEEE----SEEE CS
   ATP-grasp   4 lglpvprflaveskeeleeaaeelgl.pvvvKarrl.gydGk..Gqsvvrseedleqaleal...............keekvivEefvpfekEl 78 
                  g+p p+ +a ++  e+eeaa+++g+ p+vvK +++ g  Gk  G +vv+s+ed++ ++e+                  ++++vE   + ++El
  EHU01528.1  15 YGMPAPTGYACTTPREAEEAASKIGAgPWVVKCQVHaGGRGKagGVKVVNSKEDIRAFAENWlgkrlvtyqtdangqPVNQILVEAATDIDQEL 108
                 677888888889999*********8769****555413344455678***********999866666666666554434555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2953.76
//
Query:       EHU01529.1  [L=291]
Description: succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-30  103.5   0.6    7.2e-30  103.5   0.6    2.3  3  CoA_binding      CoA binding domain
    6.1e-20   71.6   1.6      9e-20   71.0   0.9    1.6  2  Ligase_CoA       CoA-ligase
    5.9e-11   42.3   0.1      1e-10   41.6   0.1    1.4  1  Succ_CoA_lig     Succinyl-CoA ligase like flavodoxin domain
    0.00061   20.3   0.1     0.0024   18.3   0.0    2.0  3  CoA_binding_2    CoA binding domain
  ------ inclusion threshold ------
       0.35   10.9   0.1       0.35   10.9   0.1    1.8  2  Lysine_decarbox  Possible lysine decarboxylase


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.6     2e-33   7.2e-30       1      96 []       6      99 ..       6      99 .. 0.99
   2 ?   -0.7   0.1      0.65   2.3e+03       3      39 ..     145     181 ..     143     232 .. 0.70
   3 ?   -3.1   0.0       3.7   1.3e+04      75      90 ..     259     274 ..     249     282 .. 0.64

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 2e-33
                 CTTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding  1 dkdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96
                 dk+tkvi++G++g   +g++h+++ l yg++ v+gv+p+k+gt++lglpv+++v+e++e t+++++vi+vPa+++++ ++e+++agik+i+ iteg
   EHU01529.1  6 DKNTKVICQGFTGG--QGTFHSEQALAYGTQLVGGVTPGKGGTTHLGLPVFNTVREAVEATGATATVIYVPAPFCKDGILEAIDAGIKLIITITEG 99
                 699*********99..******************************************************************************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.65
                  TEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TT CS
  CoA_binding   3 dtkviviGagglgiaglyhfkeklkygikavfgvnpr 39 
                  +++v+++  +g+ + +++++  +++yg +  +g++++
   EHU01529.1 145 PGRVGIVSRSGTLTYEAVKQTTDIGYGQSTCVGIGGD 181
                  5667777777777777777777777777777777665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.7
                  HHHHHHHHHHTT-SEE CS
  CoA_binding  75 aqeavdelveagikgi 90 
                  a e+  +l +ag+k++
   EHU01529.1 259 ADEKFAALEAAGVKTV 274
                  5556666666777765 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.91   3.2e+03      68      86 ..       3      21 ..       1      29 [. 0.75
   2 !   71.0   0.9   2.5e-23     9e-20       1     152 [.     151     271 ..     151     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.91
                HHS-TT-SEEEEEEEESSS CS
  Ligase_CoA 68 laadpevkvilldivlGyg 86
                ++ d+++kvi   + +G g
  EHU01529.1  3 ILIDKNTKVICQGFTGGQG 21
                6679999999877777766 PP

  == domain 2  score: 71.0 bits;  conditional E-value: 2.5e-23
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 ++++GtL+yea++++++               g +q++++++G+d  +         ++++i+ lk ++ dp++++i++ +++G g++e++aa+++k +
  EHU01529.1 151 VSRSGTLTYEAVKQTTDI--------------GYGQSTCVGIGGDPIP---------GSNFIDILKMFQDDPQTEAIVMIGEIG-GSAEEEAAAFIKDH 225
                 689***************..............***************9.........***************************.***********986 PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraaka 152
                          +pvv ++aG +a++++++++a+a+  +g  +a+ k +al+aa++
  EHU01529.1 226 VT-------KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGV 271
                 43.......59************************************999975 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   2.8e-14     1e-10       1     136 [.     145     285 ..     145     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.8e-14
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGne..advdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseag 95 
                   pG+++++s SG+l  + ++++++ g g s++v +G       ++ d+l+++++dp+t++i++  E  + +++ ++a  + + +kpvv + +G ++ +
    EHU01529.1 145 PGRVGIVSRSGTLTYEAVKQTTDIGYGQSTCVGIGGDpiPGSNFIDILKMFQDDPQTEAIVMIGEIGGSAEEEAAAFIKDHVTKPVVGYIAGVTAPK 241
                   79*********************************9622468999********************999988877777777779*********98766 PP

  Succ_CoA_lig  96 araaashtgalagsdavvd...aafrqaGvlrvdsleelfdaae 136
                    +      + +ag + + d   aa++ aGv  v+sl ++ da++
    EHU01529.1 242 GKRMGHAGAIIAGGKGTADekfAALEAAGVKTVRSLADIGDAVK 285
                   65554444677888888884446777888888888877777766 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.8e-07    0.0024      33     115 ..      39     129 ..      26     130 .. 0.85
   2 ?   -2.3   0.0       1.7   5.9e+03      89     106 ..     257     274 ..     218     280 .. 0.57
   3 ?   -2.6   0.0       2.1   7.5e+03      39      57 ..     267     285 ..     263     288 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.8e-07
                    ESSS-..SEETTEES----T......T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT....---HHHHHHHHHTT-EEE.ES-HHHHH CS
  CoA_binding_2  33 Vnpke..eeilgekvyaslaed..pepvdlvdvftppeatpeivkealalgakavwlqpg....sedeeaaelaeeagirvvgdrCilveg 115
                    V+p +  ++ lg +v+ ++ e+   +   + ++++p+  + + + ea+++g+k ++   +        ++  +++eag+r++g++C++v++
     EHU01529.1  39 VTPGKggTTHLGLPVFNTVREAveATGATATVIYVPAPFCKDGILEAIDAGIKLIITITEgiptLDMLTVKMKLDEAGVRMIGPNCPGVIT 129
                    556665588899********843677777999************************99988885666677888999************975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                    ---HHHHHHHHHTT-EEE CS
  CoA_binding_2  89 sedeeaaelaeeagirvv 106
                       +e  +++e+ag++ v
     EHU01529.1 257 GTADEKFAALEAAGVKTV 274
                    444444455555555544 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.1
                    EETTEES----T....T-- CS
  CoA_binding_2  39 eilgekvyaslaedpepvd 57 
                    e  g+k ++sla+   +v+
     EHU01529.1 267 EAAGVKTVRSLADIGDAVK 285
                    5568888888886445554 PP

>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3         5   1.8e+04      59      66 ..      16      23 ..      16      24 .. 0.86
   2 ?   10.9   0.1   9.9e-05      0.35      51      76 ..     244     269 ..     237     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 5
                     -S-SHHHH CS
  Lysine_decarbox 59 lPGGiGTl 66
                     + GG GT+
       EHU01529.1 16 FTGGQGTF 23
                     68*****8 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.9e-05
                      HHESEEEE-S-SHHHHHHHHHHHHHH CS
  Lysine_decarbox  51 eladafvilPGGiGTleElleiltli 76 
                      ++++a  i++GG GT++E + +l  +
       EHU01529.1 244 RMGHAGAIIAGGKGTADEKFAALEAA 269
                      68899999************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2135.76
//
Query:       EHU01530.1  [L=523]
Description: cytochrome d ubiquinol oxidase subunit I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.8e-175  582.2  22.4   5.5e-175  582.0  22.4    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  582.0  22.4  3.1e-179  5.5e-175       1     418 []       7     501 ..       7     501 .. 0.99

  Alignments for each domain:
  == domain 1  score: 582.0 bits;  conditional E-value: 3.1e-179
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     l+Rlqfalta++HflfvpltlG+a+llai+et+y+ +g++ yk+++kfwgklf+inFa+Gv+tG+++efqfgtnWs+ys++vGdifgapLaiEgl
      EHU01530.1   7 LSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGL 101
                     8********************************************************************************************** PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflEstf+gl++fgwdr+ k +hl++twlvaig+++SalwIl+an+wmq+P + e+n +t+r+e+++f ++++np+a++kf+Htv+a+++t+a
      EHU01530.1 102 MAFFLESTFVGLFFFGWDRLGKVQHLAVTWLVAIGSNMSALWILVANGWMQNPIASEFNFETMRMEMVSFSELVLNPVAQVKFVHTVAAGYTTGA 196
                     *********************************************************************************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr.rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee..aplslfgipdeeeeknefaieiPgl 282
                     +f++g+sawyll+ r+ +fa++s++ia+ ++++a+l +++lGd+sg+e+ ++q++KlAA+e++wet+   a+++lfg+pd+++++n++ai+iP+l
      EHU01530.1 197 MFILGISAWYLLKgRDMAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPapAAFTLFGVPDQSAQHNKYAIQIPYL 291
                     ***************9***************************************************9999************************ PP

  Cyt_bd_oxida_I 283 lsllatgsldgevkGlndlpk.................................................................eevPpvalv 312
                     l+l+at+s+d++v+Gl++l +                                                                 + +P va++
      EHU01530.1 292 LGLIATRSTDTPVTGLKELLAqhevrirngmkayalldelrqgntdpavrdafnhskkdlgyglllkrytanvsdaseaqikqatqDSIPRVAPL 386
                     *******************999************************************************************************* PP

  Cyt_bd_oxida_I 313 fwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWivtevGRqPWivygllrtadavspvsagevllslilflll 398
                     +++frimv +gvlll +++l+++          rwll+++l+ iplp+iaveaGW+v+e+GRqPW++ ++l+ta a s++++g+vl+s+il++ l
      EHU01530.1 387 YFAFRIMVLCGVLLLGVIALSFWSvirnrigqqRWLLKAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAIANSTLTVGDVLFSMILICGL 481
                     ********************999999*******9************************************************************* PP

  Cyt_bd_oxida_I 399 ylvLlvvevylllklikkgp 418
                     y+++lv+e+yl++k+++ gp
      EHU01530.1 482 YTLFLVAEMYLMFKFARLGP 501
                     ****************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3750.47
//
Query:       EHU01531.1  [L=379]
Description: cytochrome d terminal oxidase, subunit II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-109  363.7  35.1   8.9e-109  363.5  35.1    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.5  35.1    5e-113  8.9e-109       1     303 []       7     362 ..       7     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: 363.5 bits;  conditional E-value: 5e-113
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      l+++w+llig+ll+g++v+dGfD+GvG+l+++l+++d+err+++nsi+p+Wdgn+vWL+taggalfaa+P++ya++fsg+y++++l+L++l +R
       EHU01531.1   7 LRFVWWLLIGILLVGFAVTDGFDMGVGMLTHVLGRTDTERRVMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLYFR 100
                      6789****************************************************************************************** PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.....ey.gflsdllnpfallvglllvalflllGalylalkteg 182
                      +v+f++rsk+e++rwr  wd+ +figS++++l++Gva+gnllqGvpf+ad     +y g +++llnpfall+g+++va++l++Ga+yl ++t+g
       EHU01531.1 101 PVGFDYRSKIEDARWRGAWDWGIFIGSFVPPLVIGVAFGNLLQGVPFHADeymrlYYtGNFFQLLNPFALLAGVVSVAMILTQGATYLQMRTTG 194
                      ***********************************************9887777655566668******************************* PP

  Cyt_bd_oxida_II 183 elqerarrlalvlalvllvllvvvllwtll.........................................lvllllavlalllavlllrkkre 235
                      el+ r r +a+++alv++++++++++w+ +                                         +++ ll+v++ ll+v++ r ++ 
       EHU01531.1 195 ELHLRSRITAQIAALVMMACFALAGVWVRYgidgyvvtstldhfaasnplgktvvreagawmvnfqqhpvlWLFPLLGVVLPLLTVMCSRGEKG 288
                      *************************999999999999999****************************9874444799999999999999999* PP

  Cyt_bd_oxida_II 236 glaflasaltvllvvlllavslfPyllpss......ltianaasseytlkvmlivalillplvlaytawlyrvf 303
                      glafl+s+lt+++v++++++++fP+++pss      lt+++a+ss  tl++m+++a+i++p++l+yt w+y+ +
       EHU01531.1 289 GLAFLCSSLTLACVIMTAGIAMFPFIMPSStvpgtsLTMWDATSSLLTLEIMTFAAIIFVPVILLYTSWCYWKM 362
                      ************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2610.15
//
Query:       EHU01532.1  [L=37]
Description: membrane-bound protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-14   52.5   6.6      4e-14   52.4   6.6    1.0  1  YbgT_YccB  Membrane bound YbgT-like protein


Domain annotation for each model (and alignments):
>> YbgT_YccB  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   6.6   2.2e-18     4e-14       1      26 [.       1      26 [.       1      27 [. 0.98

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.2e-18
   YbgT_YccB  1 MWYFaWiLGvlLAvlfgilnalwlEk 26
                MWYFaWiLG+lLA++fgi+ al++E+
  EHU01532.1  1 MWYFAWILGTLLACAFGIITALAIEH 26
                *************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 303.27
//
Query:       EHU01533.1  [L=97]
Description: YbgE family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-27   95.9   8.3    1.5e-27   95.7   8.3    1.0  1  Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)


Domain annotation for each model (and alignments):
>> Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   8.3   8.5e-32   1.5e-27       1      77 [.      17      93 ..      17      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 8.5e-32
  Cyd_oper_YbgE  1 lRaLslllAlalaavvlwdpelfaaatsglshgllllllwavcagvvhGvGFrprkalwrllFsPllallilllali 77
                   lRaLsl+lAl+la+++lwdp ++a++ +g+  +++++l+wavc+gv+hG GFrpr+ +wr++F Pl+all+l++al 
     EHU01533.1 17 LRALSLILALWLAGCLLWDPARYATRPEGILLWQGIVLIWAVCTGVIHGSGFRPRRLRWRAFFAPLPALLVLFWALS 93
                   7************************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 931.77
//
Query:       EHU01534.1  [L=134]
Description: thioesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-19   67.8   0.3    1.1e-18   67.3   0.3    1.2  1  4HBT         Thioesterase superfamily
    1.5e-10   41.6   0.2    1.6e-10   41.5   0.2    1.0  1  4HBT_2       Thioesterase-like superfamily
    3.7e-05   23.2   0.1    4.1e-05   23.0   0.1    1.1  1  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.3   1.9e-22   1.1e-18       1      77 [.      20     103 ..      20     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.9e-22
                 TSSB-HHHHHHHHHHHHHHHHHHTTST.......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggr.......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 gGvv+++ y a+ ++a++++lr +++        + ++vv+++++d+l+++rl+d l+++ +v+   r+++++++++++ +g++
  EHU01534.1  20 GGVVYHASYIAFYERARTEMLRQHHFNqqalleqQVAFVVRRMTVDYLSAARLDDLLEIQSEVTSMTRATMTFSQRIVNAEGKV 103
                 69******************************************************************************9987 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.2   2.7e-14   1.6e-10       4     120 ..      15     129 ..      12     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.7e-14
      4HBT_2   4 ndvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarveeriv 102
                 +d+D+ g +++a+y++++e+ar ++l + +++++++ +++++ ++++ +v+y + +++ d l++++ v+  ++ t+ + +r+++ a+gk   ++e  i+
  EHU01534.1  15 EDTDAGGVVYHASYIAFYERARTEMLRQHHFNQQALLEQQVAFVVRRMTVDYLSAARLDDLLEIQSEVTSMTRATMTFSQRIVN-AEGKVLNEAEVLIA 112
                 799***********************9999999999999********************************************9.78888888888888 PP

      4HBT_2 103 vmdygkrskkapvPpell 120
                 +++ +   k+  +P+ + 
  EHU01534.1 113 CINPHLM-KPIALPKSIV 129
                 8877665.7777777665 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   6.9e-09   4.1e-05      14     131 ..      16     132 ..       3     134 .] 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.9e-09
  Acyl-ACP_TE  14 evdvngtakleallnllqdvaanqveelGlsddkflkklnlvWvvakyeieierlpefgdkveietwaesenklfcyrdfkvrdekgekiieaksvfv 111
                  + d+ g +   + ++  +   ++ +++  +++++ l +++ + vv+++ ++     ++ d +ei+ ++ s+ +  +    ++ +++g+++ ea+ +  
   EHU01534.1  16 DTDAGGVVYHASYIAFYERARTEMLRQHHFNQQA-LLEQQVAFVVRRMTVDYLSAARLDDLLEIQSEVTSMTRATMTFSQRIVNAEGKVLNEAEVLIA 112
                  4444455555555566666666666677777777.778899********************************************************* PP

  Acyl-ACP_TE 112 lmdqetrrlsrvtdeilaey 131
                   ++    ++ ++++ i+ae+
   EHU01534.1 113 CINPHLMKPIALPKSIVAEF 132
                  ****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1293.38
//
Query:       EHU01535.1  [L=228]
Description: membrane spanning protein in TolA-TolQ-TolR complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-41  140.6   0.7      3e-41  140.1   0.7    1.2  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.7   1.7e-45     3e-41       6     125 ..      79     206 ..      74     208 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 1.7e-45
                 HHHHHHHHHHH..HT......-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHH CS
   MotA_ExbB   6 ldrilkaglqe..kl......vdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALia 96 
                  ++i++ag++e  +l        +a  e   ra++ +++re+e le+++++l t+gs++P++GL+GTV+G+++af al+++++a+l++vapgiaeALia
  EHU01535.1  79 AEQIFYAGFKEfaRLhrannhAPEAAVEGASRAMRISMNRELEALENHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIA 177
                 67899999998764478888888999999********************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  97 TalGlvvAipavlaynklkrkverlvlel 125
                 Ta+Gl++Aipav+ayn+l+++v++l++ +
  EHU01535.1 178 TAIGLFAAIPAVMAYNRLNQRVNKLEQGY 206
                 ************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1719.39
//
Query:       EHU01536.1  [L=142]
Description: membrane spanning protein in TolA-TolQ-TolR complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-24   85.5   0.1    3.8e-24   85.3   0.1    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1   2.1e-28   3.8e-24       2     129 ..      10     141 ..       9     142 .] 0.88

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 2.1e-28
        ExbD   2 kresaeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqk.eveekelirisis..adgsiyldkkav...sveelaqklkerkakppdklt 94 
                 ++ ++ein++p++Dv+++LL++F+ ta++ +++ +evdlP+++++++   +++ ++++ +s   ++s+ +d++++     e++  +++ r + +p+  +
  EHU01536.1  10 RELKSEINIVPLLDVLLVLLLIFMATAPIITQS-VEVDLPDATDSKTvSSDDNPPVIVEVSgvGQYSMVVDHDRLpqlPPEQVISEAQRRLEANPKT-V 106
                 67899****************************.************744444445555555444466999***955559*****************9.* PP

        ExbD  95 vaikadkdvsygklvevldtlkkagiekvslvttl 129
                   i + k+v+y++++++l+ l++ag+++v+l+t++
  EHU01536.1 107 FLIGGAKEVPYDEIIKALNLLHQAGVKSVGLMTQP 141
                 ********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1058.51
//
Query:       EHU01537.1  [L=431]
Description: membrane anchored protein in TolA-TolQ-TolR complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-36  125.0   0.1      1e-36  125.0   0.1    3.2  3  TolA           TolA C-terminal


Domain annotation for each model (and alignments):
>> TolA  TolA C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   3.9         1   1.8e+04      75      75 ..     142     142 ..     119     171 .. 0.65
   2 ?   -7.5   6.7         1   1.8e+04      74      74 ..     225     225 ..     192     259 .. 0.63
   3 !  125.0   0.1   5.8e-41     1e-36       1      96 []     334     428 ..     334     428 .. 0.98

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 1
                 S CS
        TolA  75 a 75 
                 +
  EHU01537.1 142 K 142
                 2 PP

  == domain 2  score: -7.5 bits;  conditional E-value: 1
                 T CS
        TolA  74 v 74 
                 +
  EHU01537.1 225 Q 225
                 1 PP

  == domain 3  score: 125.0 bits;  conditional E-value: 5.8e-41
                 S-SSS-TTCCHHHHHHHHHHHHHHHTTTTTGGGGTT--EEEEEEEETTSEEEEEEEEEE-HHHHHHHHHH.HCTS-----SSHHHHHHHTTEEEEE CS
        TolA   1 gaaaksgavgaevdkYaavikkaiqsrllkedsfkgktCrvkikLapdGtllsvkkegGdpalCqAalaAvakvakiPkppsqdvyeklKeinlev 96 
                 g+++k+ga+ga+v++Y ++i++aiqsr++++d + gk C+++ikLapdG+l++vk+egGdpalCqAa+aA ak+a+iPkppsq+vye +K++++ +
  EHU01537.1 334 GNQKKAGASGADVNAYLGQITSAIQSRFYDADLYSGKSCDLRIKLAPDGMLIDVKSEGGDPALCQAAIAA-AKQAHIPKPPSQAVYEVFKNAPMRF 428
                 589*******************************************************************.*********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5013  (0.279603); expected 358.6 (0.02)
Passed bias filter:                     1297  (0.0723409); expected 358.6 (0.02)
Passed Vit filter:                       873  (0.0486921); expected 17.9 (0.001)
Passed Fwd filter:                       351  (0.0195772); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 4.44u 0.39s 00:00:04.83 Elapsed: 00:00:00.81
# Mc/sec: 1600.82
//
Query:       EHU01538.1  [L=431]
Description: periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-35  120.2   4.3    7.9e-10   38.4   0.3    6.0  6  PD40             WD40-like Beta Propeller Repeat
    1.4e-33  115.2   0.1    4.9e-33  113.5   0.0    2.0  2  TolB_N           TolB amino-terminal domain
    2.2e-11   43.1   0.0    7.4e-08   31.5   0.0    3.0  3  DPPIV_N          Dipeptidyl peptidase IV (DPP IV) N-terminal 
    1.2e-07   30.7   0.2     0.0015   17.3   0.1    3.6  4  Pectate_lyase22  Oligogalacturonate lyase
      5e-06   26.4   2.1      0.019   14.7   0.5    3.7  3  Gmad1            Lipoprotein LpqB beta-propeller domain
    6.9e-05   21.8   0.0    0.00045   19.1   0.0    1.9  2  Peptidase_S9_N   Prolyl oligopeptidase, N-terminal beta-prope
  ------ inclusion threshold ------
      0.033   14.3   0.1      0.073   13.2   0.1    1.5  1  PilZ_2           Atypical PilZ domain, cyclic di-GMP receptor


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.3e-08   3.2e-05       8      33 ..     200     224 ..     198     227 .. 0.86
   2 !   37.2   0.0   7.4e-13   1.9e-09       2      38 .]     238     273 ..     237     273 .. 0.95
   3 !   38.4   0.3   3.1e-13   7.9e-10       2      37 ..     282     316 ..     281     317 .. 0.96
   4 ?    1.7   0.0       0.1   2.6e+02      18      30 ..     342     354 ..     339     357 .. 0.80
   5 !   14.3   0.0   1.2e-05      0.03       9      31 ..     376     399 ..     370     405 .. 0.83
   6 ?   -0.8   0.1      0.64   1.6e+03      13      18 ..     424     429 ..     414     429 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
                 SS.EEEEEE-TTSSEEEEEEECT.TC CS
        PD40   8 pgnegaPsfSPDGkrlaFsSdRgsGk 33 
                 p++ ++P++SPDG++la++ + + Gk
  EHU01538.1 200 PQPLMSPAWSPDGSKLAYVTFES-GK 224
                 556689***************99.87 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 7.4e-13
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 +++ ++p ++gaP+fSPDG++laF+ +++ G+ ++yv
  EHU01538.1 238 RQVASFPRHNGAPAFSPDGTKLAFALSKT-GSLNLYV 273
                 678899***********************.******8 PP

  == domain 3  score: 38.4 bits;  conditional E-value: 3.1e-13
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIy 37 
                 +++t +  n ++P++ PD ++la++Sd+  G p+Iy
  EHU01538.1 282 RQITDGRYNSTEPTWFPDSQTLAYTSDQA-GAPQIY 316
                 799**************************.****** PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.1
                 TTSSEEEEEEECT CS
        PD40  18 PDGkrlaFsSdRg 30 
                  DGk+++  S+ g
  EHU01538.1 342 SDGKSMVMISTSG 354
                 7*******99944 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 1.2e-05
                 S.EEEEEE-TTSSEEEEEEECT.. CS
        PD40   9 gnegaPsfSPDGkrlaFsSdRg.s 31 
                 + ++ Ps+ P+G++ ++sS++g  
  EHU01538.1 376 FLDETPSLAPNGTMVIYSSTQGmG 399
                 5599****************9854 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.64
                 EEEE-T CS
        PD40  13 aPsfSP 18 
                  P++SP
  EHU01538.1 424 FPAWSP 429
                 6****9 PP

>> TolB_N  TolB amino-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   1.9e-36   4.9e-33       1     101 [.      24     123 ..      24     127 .. 0.98
   2 ?   -4.1   0.0         7   1.8e+04      76      86 ..     362     372 ..     358     375 .. 0.72

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.9e-36
                 BXXEEEESGGGSEEEEE---EESSSS.S-SS-HHHHHHHHHHHTTSEEE--GGG-S---SSGGG--HHHHHTTT-SEEEEEEEE-TTSE.EEEEEEEEE CS
      TolB_N   1 leieItkggaealpiAvvpfksegsaeelaediseviaaDLerSGlFrpldksafpqkpsseaevdfadWkalgadalvtGsvtesgdgrlkvefrLwD 99 
                 ++ieIt+g+++a+pi v pfk++g + +++edi  ++aaDL++SG+F+pld+s++pq+p+s++ev+ a+W+alg+da+v+G++++++dg+++v+++L+D
  EHU01538.1  24 VRIEITQGVNSARPIGVIPFKWSGPG-AAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPTSAQEVQPAAWSALGIDAVVVGQIQPNADGSYQVSYQLVD 121
                 58************************.************************************************************************ PP

                 -S CS
      TolB_N 100 vv 101
                 ++
  EHU01538.1 122 TA 123
                 97 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7
                 SEEEEEEEE-T CS
      TolB_N  76 dalvtGsvtes 86 
                 + lvtG+v+  
  EHU01538.1 362 QDLVTGAVQTL 372
                 67999999865 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00036      0.92      44     119 ..     202     219 ..     179     242 .. 0.73
   2 !   31.5   0.0   2.9e-11   7.4e-08     240     345 ..     250     349 ..     220     359 .. 0.84
   3 ?   -0.9   0.0       0.2   5.2e+02      29     345 ..     363     392 ..     351     397 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00036
                 .BSEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEEEEE CS
     DPPIV_N  44 klqlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrlaylr 119
                 +l+ + wSP+g kla+v                                                           
  EHU01538.1 202 PLMSPAWSPDGSKLAYV----------------------------------------------------------T 219
                 55666666666666665..........................................................4 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.9e-11
                 EEE-TTTSSEEEEEEETTSSEEEEEEESSS-C.EEESS-SSS-EEEEEEEETTTTEEEEEESSSETTEBEEEEEESSCTTEEEESSTTTSEEEEEEE-T CS
     DPPIV_N 240 vhflkrdesgflwisekdGfkHLylfdldgkseikqlTsGeweVtsilavdekrdlvyFtatkdsPlerhlYsvslesggeltrltdeegdhysasfsp 338
                 ++f ++d++++ ++++k+G   Ly++dl +++ i+q+T G ++ t+++++ +  +++ +t+ +   ++ ++Y++s++ gg+ +r+t e++++ +a +++
  EHU01538.1 250 PAF-SPDGTKLAFALSKTGSLNLYVMDLASGQ-IRQITDGRYNSTEPTWFPDS-QTLAYTSDQ--AGAPQIYKISIN-GGASQRITWEGAQNQDADVAS 342
                 444.59**************************.*****************877.556666655..779*********.*************98888888 PP

                 TSSEEEE CS
     DPPIV_N 339 sgkyyvl 345
                 +gk +v+
  EHU01538.1 343 DGKSMVM 349
                 8877765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.2
                 ETTTEECEEEETTTT.BSEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEEEEEEECTTS-E CS
     DPPIV_N  29 dletneveelspgeeklqlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrlaylrfdeseVpe 127
                 dl                                                                                                 
  EHU01538.1 363 DLV------------------------------------------------------------------------------------------------ 365
                 444................................................................................................ PP

                 EEEEESSSSC-SS-EEEEEE--BTTS---EEEEEEEECTTSCEEECS-HHHHCTTCEEEEEEEECTTSCCEEEEEEETTSTEEEEEEEETTTCCEEEEE CS
     DPPIV_N 128 itlpsytdeesqypevksikYPkaGsknpkVelkvvdlasgktvevqlpdslsekdeyitrvkWtsdeksllvqwlnRsqnrlkvvlvdaetgravvkl 226
                                                                                                                    
  EHU01538.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 EEESSS-SSS-S-EEE-TTTSSEEEEEEETTSSEEEEEEESSS-C.EEESS-SSS-EEEEEEEETTTTEEEEEESSSETTEBEEEEEESSCTTEEEESS CS
     DPPIV_N 227 eetsdgWvelhdevhflkrdesgflwisekdGfkHLylfdldgkseikqlTsGeweVtsilavdekrdlvyFtatkdsPlerhlYsvslesggeltrlt 325
                                                                                                            +g+++ lt
  EHU01538.1 366 -------------------------------------------------------------------------------------------TGAVQTLT 373
                 ...........................................................................................45555555 PP

                 TTTSEEEEEEE-TTSSEEEE CS
     DPPIV_N 326 deegdhysasfspsgkyyvl 345
                 d+  d+ + s++p+g +++ 
  EHU01538.1 374 DTFLDE-TPSLAPNGTMVIY 392
                 555555.5555555555443 PP

>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.23   5.9e+02     110     142 ..     127     160 ..      97     165 .. 0.52
   2 !    6.9   0.0   0.00082       2.1     243     270 ..     206     233 ..     185     248 .. 0.80
   3 !   17.3   0.1   5.8e-07    0.0015      42      97 ..     251     305 ..     246     309 .. 0.85
   4 !    3.7   0.0    0.0078        20     355     382 ..     293     320 ..     290     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
  Pectate_lyase22 110 etleetviyqvdeewvgygtw.vansdctklvgi 142
                       t+  ++ y++ ++w  y +  v++    kl gi
       EHU01538.1 127 GTVLAQNSYKITKQWLRYAAHtVSDEAFQKLTGI 160
                      3444455566666666666541333334555555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00082
  Pectate_lyase22 243 evwvpdgsalayvsylkgsterviysad 270
                        w pdgs layv++  g++  vi +  
       EHU01538.1 206 PAWSPDGSKLAYVTFESGKSALVIQTLS 233
                      57******************99997655 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 5.8e-07
  Pectate_lyase22  42 cftrdgskllfggafdgprnyylldlntqqavqltegkgdntfggflssdddalfy 97 
                      +f+ dg+kl f+ +  g+ n y++dl + q  q+t+g+ + t   ++ +d ++l y
       EHU01538.1 251 AFSPDGTKLAFALSKTGSLNLYVMDLASGQIRQITDGRYNSTEPTWF-PDSQTLAY 305
                      6999**********************************988866554.55666655 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.0078
  Pectate_lyase22 355 hpsftpddkqvlftsdvegkpalylakv 382
                       p++ pd +++ +tsd  g p +y +++
       EHU01538.1 293 EPTWFPDSQTLAYTSDQAGAPQIYKISI 320
                      68999******************97765 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.33   8.4e+02     136     156 ..      98     118 ..      83     137 .. 0.81
   2 !    8.5   0.0   0.00059       1.5      21      59 ..     199     238 ..     193     244 .. 0.79
   3 !   14.7   0.5   7.4e-06     0.019      26     139 ..     248     360 ..     232     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
       Gmad1 136 gkvyvavVvrdadGqksltap 156
                 + v+v+ +  +adG++++++ 
  EHU01538.1  98 DAVVVGQIQPNADGSYQVSYQ 118
                 679999999999998887765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00059
       Gmad1  21 gavdlrsaAvSrdgqqvaavtapdggrtLvvgsy.ggeas 59 
                 + + l s+A S+dg+++a vt ++g++ Lv+++  +g ++
  EHU01538.1 199 SPQPLMSPAWSPDGSKLAYVTFESGKSALVIQTLsNGSVR 238
                 567899***************9999999999865144444 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 7.4e-06
       Gmad1  26 rsaAvSrdgqqvaavtapdggrtLvvgsy.ggeasevlegg.sltrpSwdrd.galWvvedgaevvravrddaegevavveVdasalragpvtelrvSr 121
                  ++A S+dg+++a+  +++g+ +L+v++   g+ +++++g+ + t+p+w +d ++l    d+a+ +++ +      +a +++++++ +    ++  v+ 
  EHU01538.1 248 GAPAFSPDGTKLAFALSKTGSLNLYVMDLaSGQIRQITDGRyNSTEPTWFPDsQTLAYTSDQAGAPQIYK-ISINGGASQRITWEGAQN---QDADVAS 342
                 589***********************97526788999988889*******99655555555666666665.555677888888888876...7888888 PP

       Gmad1 122 DGtRaAvivekdgggkvy 139
                 DG   ++i+   g ++v 
  EHU01538.1 343 DGKSMVMISTSGGAQHVA 360
                 888888888666666665 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.093   2.4e+02     127     148 ..     204     225 ..     163     236 .. 0.56
   2 !   19.1   0.0   1.8e-07   0.00045     130     230 ..     251     338 ..     247     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.093
                     EEEEE-TTSSEEEEEEEETTSS CS
  Peptidase_S9_N 127 gefavsedgkllAyslsksGsd 148
                     ++ a s+dg+ lAy + +sG+ 
      EHU01538.1 204 MSPAWSPDGSKLAYVTFESGKS 225
                     3334455555555555555544 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.8e-07
                     EE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE.EESEEEEECTTSSEEEEEESS-SSS-TSTSB-S-BEEEEEETTS-GGG-EEEES CS
  Peptidase_S9_N 130 avsedgkllAyslsksGsdwytirvkdietgedlpdeled.vkfsgivWaadekgffYtrydkedersdtdtnlnqkvyrhkLGtaqseDelvfe 223
                     a+s+dg+ lA++lsk+Gs   ++ v+d+++g+ + +  ++  ++++ +W +d++++ Yt+ d + + ++        +y+ ++  ++s+ +  +e
      EHU01538.1 251 AFSPDGTKLAFALSKTGS--LNLYVMDLASGQ-IRQITDGrYNSTEPTWFPDSQTLAYTS-D-QAGAPQ--------IYKISINGGASQ-RITWE 331
                     79***************9..79*********9.55555540455559************9.3.444444........777777777777.66777 PP

                     -TTGTTB CS
  Peptidase_S9_N 224 eeeepkw 230
                     +++++ +
      EHU01538.1 332 GAQNQDA 338
                     6666654 PP

>> PilZ_2  Atypical PilZ domain, cyclic di-GMP receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.8e-05     0.073      42     113 ..      76     149 ..      72     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
      PilZ_2  42 rlarqqedalParPlrWsarGv.eleaga.lPaadsllrlrasdvlplrlelPvqvdaeadasrvWlrfealpp 113
                 rl +q  +a+  +P  Wsa G+  +++g+  P ad+  ++  + v+       v  +++ + ++ Wlr+ a + 
  EHU01538.1  76 RLPQQPTSAQEVQPAAWSALGIdAVVVGQiQPNADGSYQVSYQLVDTAGAPGTVLAQNSYKITKQWLRYAAHTV 149
                 78889999999***********667789989****999998888887776666666888999999***998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3531.28
//
Query:       EHU01539.1  [L=173]
Description: peptidoglycan-associated outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-22   79.9   0.0    2.2e-22   79.2   0.0    1.4  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   1.2e-26   2.2e-22       1      95 []      72     167 ..      72     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 1.2e-26
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 yF  ++++++p + + ld+ a++l+ +p++k+t+eGh+d++g+ e+n +L ++RA+aV+ ylq +gv+++++s+++yG+e+p+  + ++++ a+nr
  EHU01539.1  72 YFGLDKYDVQPDYAQMLDQHANFLRsNPSYKVTIEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQMSIVSYGKEKPAVLGHDEAAYAKNR 167
                 8999*********************999999*********************************************************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1342.61
//
Query:       EHU01540.1  [L=268]
Description: SecB-dependent secretory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-24   83.6  15.8    1.5e-23   82.7  15.8    1.5  1  TolA_bind_tri  TolA binding protein trimerisation
      2e-18   65.7  13.2    3.5e-07   30.4   0.0    4.0  3  TPR_6          Tetratricopeptide repeat
    1.6e-16   60.7   3.9    1.1e-08   35.5   0.2    3.9  4  TPR_16         Tetratricopeptide repeat
    3.6e-13   48.5   3.2    0.00012   22.0   0.0    3.7  3  TPR_2          Tetratricopeptide repeat
    1.1e-09   38.3   0.2      0.039   14.8   0.0    3.8  3  TPR_14         Tetratricopeptide repeat
    2.9e-09   36.9   8.1    1.1e-08   35.1   8.1    1.9  1  YfiO           Outer membrane lipoprotein
      5e-08   32.5   7.1     0.0021   18.1   0.0    4.3  3  TPR_8          Tetratricopeptide repeat
    3.7e-07   29.7   4.7       0.04   13.7   0.8    3.5  3  TPR_1          Tetratricopeptide repeat
    4.8e-07   30.0   0.3    8.5e-05   22.8   0.0    2.6  2  TPR_12         Tetratricopeptide repeat
    3.8e-05   24.1  14.7    0.00065   20.2   1.5    3.4  4  TPR_19         Tetratricopeptide repeat
    4.2e-05   23.7   6.0    0.00016   21.8   1.5    3.1  3  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
    6.3e-05   23.1   6.9       0.04   14.0   6.9    2.6  1  TPR_18         Tetratricopeptide repeat
    0.00098   19.3   5.4       0.82   10.2   0.5    4.2  4  TPR_17         Tetratricopeptide repeat
     0.0029   18.0   2.7     0.0029   18.0   2.7    1.6  1  HrpB7          Bacterial type III secretion protein (HrpB7)
     0.0032   18.0   7.8       0.62   10.6   0.1    4.4  4  DUF4810        Domain of unknown function (DUF4810)
     0.0033   17.0   0.6     0.0051   16.4   0.6    1.2  1  Allexi_40kDa   Allexivirus 40kDa protein
     0.0043   16.9   0.3     0.0058   16.5   0.3    1.2  1  Spc29          Spindle Pole Component 29
     0.0081   16.5   1.1      0.038   14.4   0.8    2.3  1  FlgM           Anti-sigma-28 factor, FlgM
  ------ inclusion threshold ------
      0.038   11.9   0.3       0.06   11.3   0.3    1.2  1  V_ATPase_I     V-type ATPase 116kDa subunit family
      0.046   14.2   1.0        1.5    9.4   0.0    2.9  3  DUF406         Protein of unknown function (DUF406)
      0.076   12.7  17.1       0.47   10.2   4.2    4.5  3  TPR_11         TPR repeat
      0.076   13.6  12.2       0.54   10.9  12.2    2.4  1  SlyX           SlyX
       0.08   12.3   0.4       0.13   11.6   0.4    1.3  1  FAM76          FAM76 protein
      0.089   10.7   1.2       0.12   10.3   1.2    1.1  1  Prominin       Prominin
       0.12   11.3   5.4        0.2   10.6   5.4    1.3  1  IFT57          Intra-flagellar transport protein 57
       0.41   10.7   4.7       0.41   10.7   2.0    2.0  2  COG2           COG (conserved oligomeric Golgi) complex compo
        0.6   10.2   4.7        1.3    9.1   4.7    1.5  1  DUF1664        Protein of unknown function (DUF1664)
        0.8   10.0   4.2        0.8   10.0   1.2    2.2  2  DUF948         Bacterial protein of unknown function (DUF948)
          1   10.0   6.1       0.48   11.1   1.4    2.2  2  GRDP-like      Glycine-rich domain-containing protein-like
        2.4    8.2  10.9        3.9    7.5  10.8    1.7  1  Rootletin      Ciliary rootlet component, centrosome cohesion
        5.2    7.3   9.3          2    8.7   3.4    2.6  3  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
        5.6    6.7   7.5         40    4.0   0.0    3.3  3  DUF3693        Phage related protein
          6    6.1  20.6       0.25   10.6   9.2    2.5  3  HemX           HemX, putative uroporphyrinogen-III C-methyltr
        6.6    6.8  12.9        5.1    7.2   0.5    3.5  3  TPR_3          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7  15.8   2.8e-26   1.5e-23       1      74 [.      37     110 ..      37     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 2.8e-26
  TolA_bind_tri   1 sledrvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkleagga 74 
                    s+edrv++LEri++a+ ql+ +lqqq++++q+++++LRG+i++++yql+q++erQ+++Y+++D++++  ++ ++
     EHU01540.1  37 SVEDRVTSLERISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNNSSNAS 110
                    79***************************************************************998877665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.6e-06   0.00085       4      33 .]     151     181 ..     149     181 .. 0.90
   2 !   23.4   0.4   1.2e-07   6.1e-05       2      33 .]     187     218 ..     186     218 .. 0.95
   3 !   30.4   0.0   6.6e-10   3.5e-07       1      33 []     223     255 ..     223     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   4 yklalsyrk.lgdtdkAlealerlikeYPdS 33 
                 y++a +++   +++d+A++al+  +k+YPdS
  EHU01540.1 151 YNAAVALILeKKQYDQAITALQAWVKRYPDS 181
                 888999997578******************9 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 A y+l++++++ g++d+A  ++  ++k+YP+S
  EHU01540.1 187 ANYWLGQLFYNKGKKDDAAYYYATVVKQYPKS 218
                 569********99*****************98 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 6.6e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 +Al+k +  +++ +dt+kA++ ++++ik YP++
  EHU01540.1 223 EALFKVGVIMQEKNDTAKAKAVYQQVIKLYPNT 255
                 7***********88*****************96 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       5.1   2.7e+03      45      60 ..     125     140 ..     121     148 .. 0.74
   2 !   35.5   0.2   2.1e-11   1.1e-08       9      68 .]     160     219 ..     152     219 .. 0.93
   3 !   30.4   0.1   8.8e-10   4.6e-07       3      66 ..     191     254 ..     189     256 .. 0.96
   4 !    8.7   0.0    0.0051       2.7      10      38 ..     235     263 ..     232     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 5.1
      TPR_16  45 lrqgrlaeAaalyraa 60 
                 + +g+ a+Aaa+  +a
  EHU01540.1 125 ATAGNDAGAAAAGSSA 140
                 6678888999888776 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 2.1e-11
      TPR_16   9 ragdyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 + ++yd+A+ al+a +kr+   Pd    + A ++lg++++ +g  ++Aa +y+  ++++p++p
  EHU01540.1 160 EKKQYDQAITALQAWVKRY---PDstyQPNANYWLGQLFYNKGKKDDAAYYYATVVKQYPKSP 219
                 6789***************...66666*********************************997 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 8.8e-10
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 l++++++ g+ ddAa ++ +++k++p+sP aaeAl+  g++  ++++ a+A a+y+  ++ +p+
  EHU01540.1 191 LGQLFYNKGKKDDAAYYYATVVKQYPKSPKAAEALFKVGVIMQEKNDTAKAKAVYQQVIKLYPN 254
                 7999******************************************************999997 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0051
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAll 38 
                  +d ++A a++++++k++p +  a +A+ 
  EHU01540.1 235 KNDTAKAKAVYQQVIKLYPNTESAKQAQK 263
                 57899*************99999999975 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1       0.1        53      13      33 ..     160     180 ..     151     181 .. 0.83
   2 !   20.9   0.3   4.9e-07   0.00026       2      33 ..     186     217 ..     185     218 .. 0.94
   3 !   22.0   0.0   2.2e-07   0.00012       1      33 [.     222     254 ..     222     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.1
       TPR_2  13 klgdyeeAleafekAleldPn 33 
                 ++++y++A+ a+++ ++ +P+
  EHU01540.1 160 EKKQYDQAITALQAWVKRYPD 180
                 6899*******9987777775 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 4.9e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  a+y+lG++ y++g+ ++A+ ++  +++ +P+
  EHU01540.1 186 NANYWLGQLFYNKGKKDDAAYYYATVVKQYPK 217
                 699***************************97 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 2.2e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 aeal+  G +  +++d ++A++ ++++++l+Pn
  EHU01540.1 222 AEALFKVGVIMQEKNDTAKAKAVYQQVIKLYPN 254
                 89******************************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00054      0.29      12      34 ..     159     181 ..     150     183 .. 0.84
   2 !   14.8   0.0   7.5e-05     0.039       1      42 [.     185     226 ..     185     228 .. 0.93
   3 !    8.2   0.0    0.0097       5.1       3      38 ..     224     259 ..     222     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00054
      TPR_14  12 lalGdpdeAiallrralalaPdd 34 
                 l+  ++d+Ai++l+++++++Pd+
  EHU01540.1 159 LEKKQYDQAITALQAWVKRYPDS 181
                 46689****************97 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.5e-05
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 p+a + l++++++ G+ d+A+ ++  +++++P+++ a  +l 
  EHU01540.1 185 PNANYWLGQLFYNKGKKDDAAYYYATVVKQYPKSPKAAEALF 226
                 68999******************************9999886 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0097
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                 al + + ++ +  d+++A a+++++++l+P+ + a 
  EHU01540.1 224 ALFKVGVIMQEKNDTAKAKAVYQQVIKLYPNTESAK 259
                 66666667778889****************988765 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   8.1   2.1e-11   1.1e-08       9     133 ..     151     265 ..     144     268 .] 0.84

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.1e-11
                 HHHHHH.HHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSCTTTS-THHH CS
        YfiO   9 Yekgqe.alqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarellrskrdpesa 106
                 Y++++   l+k++y +Ai++l+a  +ryP s y+++a++ l +  y+++   +a+ ++ + +++yP+++++ ++l+  g+   ++             +
  EHU01540.1 151 YNAAVAlILEKKQYDQAITALQAWVKRYPDSTYQPNANYWLGQLFYNKGKKDDAAYYYATVVKQYPKSPKAAEALFKVGVIMQEKN-----------DT 238
                 4444431689******************************************************************9997543332...........23 PP

                 HHHHHHHHHHHHHSTTSTTHHHHHHHH CS
        YfiO 107 rqafedfkklvekyPdseYaadakkrl 133
                 ++a    ++ ++ yP++e a++a+krl
  EHU01540.1 239 AKAKAVYQQVIKLYPNTESAKQAQKRL 265
                 466777788889999999999999998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.028        15       5      33 ..     151     180 ..     150     181 .. 0.81
   2 !    9.8   0.2    0.0019         1       3      33 ..     187     217 ..     185     218 .. 0.90
   3 !   18.1   0.0   3.9e-06    0.0021       1      33 [.     222     254 ..     222     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.028
                 HHHHHHH.HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiy.lklgdyeeAkeyyekaleldpd 33 
                 yn + ++ l++++y++A+ +++  ++  pd
  EHU01540.1 151 YNAAVALiLEKKQYDQAITALQAWVKRYPD 180
                 5677777789**********9987777775 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a y+lg++  ++g+++ A  yy  +++  p+
  EHU01540.1 187 ANYWLGQLFYNKGKKDDAAYYYATVVKQYPK 217
                 89*****************999999987776 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 3.9e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 aea+++ g i ++++d  +Ak++y+++++l p+
  EHU01540.1 222 AEALFKVGVIMQEKNDTAKAKAVYQQVIKLYPN 254
                 799*****************************8 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.086        45      13      25 ..     160     172 ..     159     181 .. 0.80
   2 !   13.7   0.8   7.7e-05      0.04       3      33 ..     187     217 ..     185     218 .. 0.91
   3 !   11.9   0.0   0.00029      0.15       1      33 [.     222     254 ..     222     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.086
                 HTT-HHHHHHHHH CS
       TPR_1  13 klgkydeAleyye 25 
                 ++++yd+A+ + +
  EHU01540.1 160 EKKQYDQAITALQ 172
                 579******9987 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7.7e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 a y lG++++++gk d+A  yy  +++ +P+
  EHU01540.1 187 ANYWLGQLFYNKGKKDDAAYYYATVVKQYPK 217
                 6699******************999999997 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 a+al+  G++ +++++  +A + y+++++l+Pn
  EHU01540.1 222 AEALFKVGVIMQEKNDTAKAKAVYQQVIKLYPN 254
                 7888888999999*******************8 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.5   0.00035      0.18       4      75 ..     148     215 ..     146     217 .. 0.87
   2 !   22.8   0.0   1.6e-07   8.5e-05       4      76 ..     186     253 ..     183     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00035
      TPR_12   4 talnnlaavl.rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++ +n a++l ++ ++yd+A++ l++ + ++     pd+ +  ++ + Lg+l++  g+ ++A +++  +++ +
  EHU01540.1 148 NSDYNAAVALiLEKKQYDQAITALQAWVKRY-----PDSTYQPNANYWLGQLFYNKGKKDDAAYYYATVVKQY 215
                 5667877788678999*****9999998888.....******************************9888766 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.6e-07
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a + l+++ +  g+ d+A  ++ +++ ++     p++p +a++l+  g + ++ +++++A + +++++++++
  EHU01540.1 186 NANYWLGQLFYNKGKKDDAAYYYATVVKQY-----PKSPKAAEALFKVGVIMQEKNDTAKAKAVYQQVIKLYP 253
                 56778*********************9999.....***********************************997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       9.7   5.1e+03      12      17 ..      54      59 ..      44      74 .. 0.54
   2 !   12.4   0.4   0.00032      0.17      25      62 ..     147     184 ..     132     193 .. 0.80
   3 !   20.2   1.5   1.2e-06   0.00065       2      65 ..     159     225 ..     147     228 .. 0.94
   4 !   13.9   0.8   0.00011     0.057       8      66 ..     202     263 ..     198     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 9.7
      TPR_19 12 alleqa 17
                +l++q+
  EHU01540.1 54 QLMQQL 59
                222222 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00032
      TPR_19  25 aearllLAeallal.gqldeAealLdalpeedpddarya 62 
                 a+  ++ A al+   +q+d+A+ +L+a  + +pd + y+
  EHU01540.1 147 ANSDYNAAVALILEkKQYDQAITALQAWVKRYPD-STYQ 184
                 455555566665544*******************.7775 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.2e-06
      TPR_19   2 laegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddaryasLl 65 
                 l+ ++y++A+ +l++  + +p+   +++a ++L ++ ++ g  d+A    +++ +++p+++ +a +l
  EHU01540.1 159 LEKKQYDQAITALQAWVKRYPDstyQPNANYWLGQLFYNKGKKDDAAYYYATVVKQYPKSPKAAEAL 225
                 6789***********99******************************************99888765 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 0.00011
      TPR_19   8 aeAlalleqalqedpknaearllL...AeallalgqldeAealLdalpeedpddaryasLlA 66 
                 ++A+ +++ + +++pk++ a+ +L     ++ + +++++A+a+ +++ + +p+++ +++++ 
  EHU01540.1 202 DDAAYYYATVVKQYPKSPKAAEALfkvGVIMQEKNDTAKAKAVYQQVIKLYPNTESAKQAQK 263
                 899**********88866666666666999***********************888887665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         4   2.1e+03      24      51 ..      79     106 ..      74     114 .. 0.76
   2 ?    6.9   0.1     0.013       7.1      53      80 ..     144     172 ..     134     174 .. 0.82
   3 !   21.8   1.5   3.1e-07   0.00016       1      60 [.     160     223 ..     160     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4
                 HHHHHHHHHHHHTT-HHHHHHHHHCTSH CS
      ANAPC3  24 edayllAlclylngqykrAyellrkakl 51 
                 +++y l ++  +++q ++ ++ l+++++
  EHU01540.1  79 QNTYQLNQVIERQKQIYQQIDSLSSNNS 106
                 5789999999999999988888888833 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.013
                 HC-HHHHHHHHHHHH.HTT-HHHHHHHH- CS
      ANAPC3  53 skslgcrylfAqcll.kLkkyeeAiaaLe 80 
                 s + ++ y +A +l+ + k+y++Ai+aL+
  EHU01540.1 144 SGDANSDYNAAVALIlEKKQYDQAITALQ 172
                 566788899999996599*********97 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 3.1e-07
                 HTT-HHHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHH CS
      ANAPC3   1 dqnnyknAiflaerlla...aetespedayllAlclylngqykrAyellrka.klnskslgcry 60 
                 ++++y+ Ai  +   ++    +t+ p++ y+l++ +y+ g+ + A +++ +  k+++ks++++ 
  EHU01540.1 160 EKKQYDQAITALQAWVKrypDSTYQPNANYWLGQLFYNKGKKDDAAYYYATVvKQYPKSPKAAE 223
                 5789999999999999666699*********************9999999999******98864 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   6.9   7.6e-05      0.04      13     106 ..     151     244 ..     140     265 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.6e-05
      TPR_18  13 lyqeaqkaldegnyltaieqLealdtryPfGaYaeqaqL...DLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldksslqslv 106
                 + ++    l++++y +ai+ L+a  +ryP  +Y   a+     L Y k k++d +   a++   ++ +P+ pk   +l+  g++ ++ ++ +  + v
  EHU01540.1 151 YNAAVALILEKKQYDQAITALQAWVKRYPDSTYQPNANYwlgQLFYNKGKKDDAAYYYATV---VKQYPKSPKAAEALFKVGVIMQEKNDTAKAKAV 244
                 3334445689***********************8887652236788888888877777765...8999*****999999999998877766554444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       2.4   1.3e+03      17      33 ..     151     168 ..     144     169 .. 0.78
   2 !   10.2   0.5    0.0015      0.82       3      32 ..     172     204 ..     170     206 .. 0.88
   3 ?    7.2   0.0     0.014       7.4       2      33 ..     208     242 ..     207     243 .. 0.84
   4 ?    0.2   0.0       2.4   1.3e+03       2      11 ..     245     254 ..     244     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 2.4
      TPR_17  17 nnLAell.lknGdlmtAr 33 
                 +n A++l l+++++++A+
  EHU01540.1 151 YNAAVALiLEKKQYDQAI 168
                 6778877569999*9997 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0015
      TPR_17   3 lkaleldPnn...adaynnLAelllknGdlmtA 32 
                 +  ++++P++   ++a + L++l++++G++++A
  EHU01540.1 172 QAWVKRYPDStyqPNANYWLGQLFYNKGKKDDA 204
                 5667888999999****************9998 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.014
      TPR_17   2 ylkaleldPnn...adaynnLAelllknGdlmtAr 33 
                 y  +++++P++   a+a++  ++++ +++d+++A+
  EHU01540.1 208 YATVVKQYPKSpkaAEALFKVGVIMQEKNDTAKAK 242
                 66677777777777*******************97 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 2.4
      TPR_17   2 ylkaleldPn 11 
                 y+++++l+Pn
  EHU01540.1 245 YQQVIKLYPN 254
                 9********8 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.7   5.4e-06    0.0029       2      67 ..      41     106 ..      40     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.4e-06
       HrpB7   2 rasawrtlverrarreerlraeleaaraalaaaeaalaaaqaqveaardavraheerlddlttgss 67 
                 r++ ++++++++a+  ++l+ ++++ +++ +++  ++++   q+++  ++ +++ +++d+l +  s
  EHU01540.1  41 RVTSLERISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNNS 106
                 7899********************************************************987665 PP

>> DUF4810  Domain of unknown function (DUF4810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3       2.2   1.2e+03       8      36 ..      52      80 ..      43      88 .. 0.70
   2 ?    1.1   0.5       1.1   5.9e+02       6      48 ..      76     117 ..      73     136 .. 0.51
   3 !   10.6   0.1    0.0012      0.62      19      79 ..     161     219 ..     150     225 .. 0.79
   4 ?    5.6   0.0     0.044        23      51      78 ..     228     255 ..     224     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 2.2
     DUF4810  8 qdavYeyykedeeskekqieklekiieka 36
                q ++ + ++++ ++++  i++l+  i++ 
  EHU01540.1 52 QAQLMQQLQQQMSDNQRDIDSLRGEIQQN 80
                56666777777777777777777777765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.1
     DUF4810   6 nYqdavYeyykedeeskekqieklekiiekaeakgkkvpPGly 48 
                 + q+++Y+  +   e++++  +++++  ++ +++ ++++ G  
  EHU01540.1  76 EIQQNTYQLNQV-IERQKQIYQQIDSLSSNNSSNASQPAAGAG 117
                 567888888875.333344444444444444444444444444 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0012
     DUF4810  19 eeskekqieklekiiekaeakgkkvpPGlyAelGllylkegkkeeaieafekEkelfPESa 79 
                 +++ ++ i++l++ +++    +++ +P  +  lG l +++gkk++a  ++ +  +++P S 
  EHU01540.1 161 KKQYDQAITALQAWVKRY--PDSTYQPNANYWLGQLFYNKGKKDDAAYYYATVVKQYPKSP 219
                 466677777777777766..5667788888899*************************996 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.044
     DUF4810  51 lGllylkegkkeeaieafekEkelfPES 78 
                 +G+++ +++++++a++ +++  +l+P  
  EHU01540.1 228 VGVIMQEKNDTAKAKAVYQQVIKLYPNT 255
                 799***********************54 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   9.7e-06    0.0051      66     160 ..      31     124 ..      21     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.7e-06
  Allexi_40kDa  66 nklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkassaea 160
                   +++++ s+  + t+L ++ +a  +l ++l++  s++++  +s + + ++++ +  ++ie+  +++ +++d lss+++s+ ++P +   +++++ a
    EHU01540.1  31 SSVGSGSVEDRVTSLERISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIER-QKQIYQQIDSLSSNNSSNASQPAAGAGDNAATGA 124
                   45555666678899***************9999999999999999999987755555665.799*******************988777665544 PP

>> Spc29  Spindle Pole Component 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   1.1e-05    0.0058     108     174 ..      44     128 ..      23     182 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-05
       Spc29 108 rldsiys.svkkivelekklddqkleIkeLkreleqqrtvnseLqekvaeleeevkrlaalehSnrk.................f 174
                  l++i + + + +++l++++ d++  I +L+ e++q+ +  ++  e+ +++ ++++ l + + Sn                    
  EHU01540.1  44 SLERISNaQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNNSSNASqpaagagdnaatgaataG 128
                 356665513455678999****************************************998888665455554444444444440 PP

>> FlgM  Anti-sigma-28 factor, FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.8   7.2e-05     0.038       5      45 ..      48      85 ..      44      86 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.2e-05
        FlgM  5 iSeaaka.lqkakqaaaaapevreekVaelKeaIasGtYqvd 45
                iS+a  + +q+++q   ++++ ++  +++l+ +I++ tYq +
  EHU01540.1 48 ISNAQAQlMQQLQQ---QMSD-NQRDIDSLRGEIQQNTYQLN 85
                56665552455555...5554.8999*************976 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00011      0.06     245     306 ..      46     107 ..      30     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
  V_ATPase_I 245 eeklkeveeriedlekvleqteealkevleeiakeleewklkvkkekaiyhtLnlfnldvtk 306
                 e+  +   + +++l++ ++ +++ ++++  ei+++ ++++++++++k+iy++++ ++ ++++
  EHU01540.1  46 ERISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNNSS 107
                 33444445566777778888888888888888999999999999999999999998776654 PP

>> DUF406  Protein of unknown function (DUF406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.76     4e+02      22      56 ..      39      74 ..      27      90 .. 0.70
   2 ?    0.1   0.1       2.1   1.1e+03      24      56 ..      80     112 ..      61     124 .. 0.78
   3 ?    9.4   0.0    0.0028       1.5       8      35 ..     221     248 ..     216     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.76
                STTEEEEEEE-SSHHHHHHHHHHHH.HHHHHH.STT CS
      DUF406 22 sdcvaeveivaaseaeaeaalaklt.ekAkavesep 56
                +d+v+++e++ + +a++ ++l++ + +  ++++s  
  EHU01540.1 39 EDRVTSLERISNAQAQLMQQLQQQMsDNQRDIDSLR 74
                689999999999999999987654404444444444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 2.1
                 TEEEEEEE-SSHHHHHHHHHHHHHHHHHH.STT CS
      DUF406  24 cvaeveivaaseaeaeaalakltekAkavesep 56 
                 +++++++v + ++++ +++++l +   + +s+p
  EHU01540.1  80 NTYQLNQVIERQKQIYQQIDSLSSNNSSNASQP 112
                 577888888888888888888877766666666 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0028
                 SS-----SS-SS--STTEEEEEEE-SSH CS
      DUF406   8 aagcavdvgtiidnsdcvaeveivaase 35 
                 aa + ++vg i+++++++a+ ++v+++ 
  EHU01540.1 221 AAEALFKVGVIMQEKNDTAKAKAVYQQV 248
                 677889*****************99875 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.2   0.00089      0.47       6      42 .]     160     199 ..     158     199 .. 0.90
   2 ?    1.9   0.0      0.35   1.8e+02      24      41 ..     218     235 ..     217     236 .. 0.88
   3 ?    7.2   0.2    0.0078       4.1       6      28 ..     234     256 ..     233     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00089
      TPR_11   6 eqGkyeeAieaYkkAlkldPdn...aeayynLGlayykqG 42 
                 e+ +y++Ai+a+++ +k  Pd+   ++a y+LG+++y++G
  EHU01540.1 160 EKKQYDQAITALQAWVKRYPDStyqPNANYWLGQLFYNKG 199
                 7889**************9995555************998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.35
      TPR_11  24 dPdnaeayynLGlayykq 41 
                 +P+ aea+++ G++++++
  EHU01540.1 218 SPKAAEALFKVGVIMQEK 235
                 699*********998875 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0078
      TPR_11   6 eqGkyeeAieaYkkAlkldPdna 28 
                 e+++  +A ++Y++ +kl P+  
  EHU01540.1 234 EKNDTAKAKAVYQQVIKLYPNTE 256
                 68899999**********99976 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  12.2     0.001      0.54       2      54 ..      39      91 ..      38     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.001
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX  2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54
                e+r++ LE     q +++++L++++ + q++id l+ ++++ + +l+++ e++
  EHU01540.1 39 EDRVTSLERISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQ 91
                89***************************************999997776665 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   0.00025      0.13     218     290 ..      42     110 ..      20     116 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
       FAM76 218 lvavtqLkeeiaslkkql.eqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellk 290
                 +  +    e+i + + ql +q +q++++ ++ i +l++e +++  +l +++ e++k++ ++i++l++++++   
  EHU01540.1  42 VTSL----ERISNAQAQLmQQLQQQMSDNQRDIDSLRGEIQQNTYQL-NQVIERQKQIYQQIDSLSSNNSSNAS 110
                 4444....44555554441444679*************988777666.678889999999*****999987655 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   0.00023      0.12     646     720 ..      33     106 ..       9     116 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00023
    Prominin 646 nlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraenflkkngseiinnes 720
                 + + s++  + +l++i + +++ ++++ +++  + +++d+   ++q+++ +l ++v + ++ +++++++  +n s
  EHU01540.1  33 VGSGSVEDRVTSLERISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQL-NQVIERQKQIYQQIDSLSSNNS 106
                 5666778888899999999999999999999999999999999998888775.5566666677777766655555 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.4   0.00039       0.2     272     332 ..      49     109 ..      30     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
       IFT57 272 leellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgs 332
                  + + q  +++q+++s+ +++++ l +++++ t +l+++ e+ +++ q++++ +s+ + ++
  EHU01540.1  49 SNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNNSSNA 109
                 3344455678899**************************************9999887664 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.0   0.00078      0.41      70     116 ..      55     101 ..      44     108 .. 0.88
   2 ?   -0.0   0.0       1.7   8.7e+02      92     123 ..     221     252 ..     216     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00078
        COG2  70 eleevesplaaarkkvesvreklsereeeveskleeakeleekrell 116
                  +++++++++  +++++s+r +++++ +++++ +e +k++ ++  +l
  EHU01540.1  55 LMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSL 101
                 46899*********************************998877665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.7
        COG2  92 lsereeeveskleeakeleekrellklllkld 123
                  +e+  +v   ++e+++ ++++++ + ++kl 
  EHU01540.1 221 AAEALFKVGVIMQEKNDTAKAKAVYQQVIKLY 252
                 56778899999********9998877776654 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.7    0.0025       1.3      39      96 ..      48     105 ..      39     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0025
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredl 96 
                 +s+a +++ +ql+q +++ ++  + L  +i++   +l++++e +k+i +++++++++ 
  EHU01540.1  48 ISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNN 105
                 6888899999999988888888899999999999999999999999999999998875 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2    0.0015       0.8      26      72 ..      54     100 ..      42     111 .. 0.58
   2 ?    0.3   0.1       1.6   8.7e+02      45      84 ..     231     265 ..     222     268 .] 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
      DUF948  26 ktldeaaatieelekqvdpilkevedllakvnelledvneklekvdp 72 
                 ++++++++++ + ++++d++  e+++ + + n++ e  ++  +++d+
  EHU01540.1  54 QLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDS 100
                 45555555555555555555555555555555555444444444444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.6
      DUF948  45 ilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 i++e +d+ ak+++    v +++ k+ p te+++++ + +
  EHU01540.1 231 IMQEKNDT-AKAKA----VYQQVIKLYPNTESAKQAQKRL 265
                 44444443.23333....6778888888888888777665 PP

>> GRDP-like  Glycine-rich domain-containing protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   0.00091      0.48      26      89 ..      43     105 ..      26     114 .. 0.66
   2 ?    1.2   0.2      0.99   5.2e+02      20      47 ..     159     186 ..     145     264 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00091
   GRDP-like  26 kaqkrteelwkrlypeepfeleskklkkeeevsessssisydlvkavkrqskfvykvssphise 89 
                 ++ +r  ++ ++l+++ + ++++++   +++ +++ ++ +y l + ++rq++++++++s   ++
  EHU01540.1  43 TSLERISNAQAQLMQQLQQQMSDNQR-DIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNN 105
                 44444455555555555555553333.366777788889******************9544443 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.99
   GRDP-like  20 desneekaqkrteelwkrlypeepfele 47 
                  e+++ ++   + ++w ++yp+  ++ +
  EHU01540.1 159 LEKKQYDQAITALQAWVKRYPDSTYQPN 186
                 5555555556667889999999988643 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  10.8    0.0074       3.9      10      65 ..      48     105 ..      40     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0074
   Rootletin  10 aqqrqaqLvskLqaKvlqYkkrcseleqrllektselektkltlll..ssareleeee 65 
                   + qaqL+++Lq+++ + ++ + +l ++++++t++l++   ++++  ++ ++l++++
  EHU01540.1  48 ISNAQAQLMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQiyQQIDSLSSNN 105
                 5689****************************88888765543333442222222222 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.4    0.0039         2      44     100 ..      44     101 ..      37     104 .. 0.76
   2 ?   -1.0   0.0       3.9     2e+03      50      74 ..     149     173 ..     140     182 .. 0.51
   3 ?    0.5   0.2       1.3   6.9e+02      25      54 ..     235     264 ..     220     267 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0039
                   HHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  44 eleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleaelekl 100
                    le + + + +l ++ ++ + ++  d+++l+ e++++  +l+++ +++k++ +++++l
    EHU01540.1  44 SLERISNAQAQLMQQLQQQMSDNqRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSL 101
                   3444555555556666666666689*****************************9987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.9
                   HHHHHHHHHCCCCCCTTS-TCCCCC CS
  Seryl_tRNA_N  50 aerNelskeIgkakkkkedaeelia 74 
                   +  N++ + I ++k+ ++ +++l a
    EHU01540.1 149 SDYNAAVALILEKKQYDQAITALQA 173
                   3444444444444444444444433 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 1.3
                   CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  25 kadvdelleldekrrelqveleelqaerNe 54 
                   k+d ++  +++++  +l   +e++++ +++
    EHU01540.1 235 KNDTAKAKAVYQQVIKLYPNTESAKQAQKR 264
                   344444455555555555555555554444 PP

>> DUF3693  Phage related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.3      0.16        85      30      49 ..      10      29 ..       8      33 .. 0.87
   2 ?    1.2   1.5      0.57     3e+02      28      56 ..     114     143 ..     112     144 .. 0.81
   3 ?    4.0   0.0     0.076        40       4      23 ..     231     250 ..     230     255 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.16
     DUF3693 30 avLvlgvgmalpgraqalsi 49
                ++L+l +g+a+p  a+a+++
  EHU01540.1 10 LSLSLLIGVAAPWAAHAQAS 29
                6799********99999876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.57
     DUF3693  28 laavLvlgvgma.lpgraqalsipsealaq 56 
                 ++a++ +++g+a +++ a+a+++ s a +q
  EHU01540.1 114 AGAGDNAATGAAtAGNDAGAAAAGSSAPVQ 143
                 56667778888879*********9999987 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.076
     DUF3693   4 vhaeraetpaekaaWesIak 23 
                 +++e++ t+++ka+ + + k
  EHU01540.1 231 IMQEKNDTAKAKAVYQQVIK 250
                 8************9887776 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   9.2   0.00047      0.25      14     103 ..      12     105 ..       6     111 .. 0.67
   2 ?    3.7   0.4     0.061        32     265     293 ..     154     181 ..     151     194 .. 0.78
   3 ?   -2.1   0.2       3.5   1.9e+03      30      53 ..     234     257 ..     208     266 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
        HemX  14 valavgaglyylgqqqvqeltaevaelqqqlaaleqqlaq....veaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsgae 103
                 + l +g+++ + ++ q++  +  + ++++++++le  +++    ++++++q ++ +++++ l +++++ + +l+q  +++++++qq+  +s+++
  EHU01540.1  12 LSLLIGVAAPWAAHAQASISSVGSGSVEDRVTSLERISNAqaqlMQQLQQQMSDNQRDIDSLRGEIQQNTYQLNQVIERQKQIYQQIDSLSSNN 105
                 4555667777777777767777777777777777766655233455555555556666667788888888888888888888888888888775 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.061
        HemX 265 ilAvlrqqnelYkqsLeevstwvrsyFdt 293
                 ++A+  + ++ Y q++++ ++wv++y d 
  EHU01540.1 154 AVALILE-KKQYDQAITALQAWVKRYPDS 181
                 5555544.456***************775 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.5
        HemX  30 vqeltaevaelqqqlaaleqqlaq 53 
                  ++ ta+++++ qq+ +l  ++++
  EHU01540.1 234 EKNDTAKAKAVYQQVIKLYPNTES 257
                 233444444444444444443333 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.5    0.0097       5.1      14      25 ..     161     172 ..     159     173 .. 0.91
   2 ?    5.1   2.4     0.045        24       7      27 ..     191     209 ..     189     210 .. 0.86
   3 ?   -1.1   0.1       3.9   2.1e+03       4      20 ..     225     241 ..     221     247 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0097
                 TT-HHHHHHH.. CS
       TPR_3  14 kkkyqeArelfs 25 
                 kk+y++A+ +++
  EHU01540.1 161 KKQYDQAITALQ 172
                 9*******9988 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.045
                 HHHHHHHTT-HHHHHHH..HH CS
       TPR_3   7 yAaefynkkkyqeArelfsYa 27 
                 ++  fynk+k ++A+ +  Ya
  EHU01540.1 191 LGQLFYNKGKKDDAAYY--YA 209
                 5668***********99..75 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.9
                 HHHHHHHHHHTT-HHHH CS
       TPR_3   4 lysyAaefynkkkyqeA 20 
                 l++++   + k +  +A
  EHU01540.1 225 LFKVGVIMQEKNDTAKA 241
                 45555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2806  (0.156506); expected 358.6 (0.02)
Passed bias filter:                     1088  (0.0606838); expected 358.6 (0.02)
Passed Vit filter:                       162  (0.00903564); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 1829.76
//
Query:       EHU01541.1  [L=486]
Description: AraC family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-39  132.5   1.1    3.7e-38  130.4   0.3    2.3  2  AlkA_N          AlkA N-terminal domain
    4.6e-29  100.2   3.7    8.4e-29   99.4   3.7    1.5  1  Ada_Zn_binding  Metal binding domain of Ada
    2.7e-22   78.8   0.9    6.2e-22   77.7   0.3    2.0  2  HTH_18          Helix-turn-helix domain
    8.7e-12   44.8   0.0    0.00029   20.9   0.0    3.2  3  HTH_AraC        Bacterial regulatory helix-turn-helix protein
    6.5e-09   36.2   0.0    2.1e-08   34.6   0.0    1.8  2  HhH-GPD         HhH-GPD superfamily base excision DNA repair 
    5.6e-05   22.7   4.4     0.0072   15.9   0.2    3.4  3  GntR            Bacterial regulatory proteins, gntR family
     0.0067   16.5   0.0      0.027   14.6   0.0    2.1  1  HTH_28          Helix-turn-helix domain
     0.0073   16.1   0.1       0.06   13.2   0.0    2.7  2  HTH_23          Homeodomain-like domain
  ------ inclusion threshold ------
      0.059   13.5   0.1       0.18   12.0   0.0    1.9  2  MHYT            Bacterial signalling protein N terminal repea
       0.11   12.5   0.1       0.45   10.5   0.1    2.1  2  Integrase_Zn    Integrase Zinc binding domain


Domain annotation for each model (and alignments):
>> AlkA_N  AlkA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.3   2.1e-41   3.7e-38       2     116 .]     199     315 ..     198     315 .. 0.99
   2 ?   -0.4   0.0      0.73   1.3e+03      62      89 ..     368     395 ..     358     420 .. 0.74

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 2.1e-41
      AlkA_N   2 lrLayrpPydwaallaFlaaraiegvEavdedsygRtlrldgakGvvevrhepeksalkvrlslsdlraleaviarvrrllDLdadpeaieaaL..dpl 98 
                 lrL+yrpPydw+a+l+Fl+ r ++ +Eavd ++y+Rt++l++ +G+v+++h p+k+al+v+++ s++++l+a+++r+r l+DL+a+p+ i+++L  dpl
  EHU01541.1 199 LRLSYRPPYDWQAMLDFLRLRLMNDIEAVDGETYRRTVALGEYRGWVSISHLPAKQALQVEFTRSLTPVLPALLRRLRDLFDLNAQPQRIAEHLqqDPL 297
                 89************************************************************************************************* PP

      AlkA_N  99 lapevaarpGlRvPgavd 116
                 la++++  pGlRvPga+d
  EHU01541.1 298 LAQSIQDYPGLRVPGAFD 315
                 ****************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.73
      AlkA_N  62 rlslsdlraleaviarvrrllDLdadpe 89 
                 + + ++++ l  v arvr++l   a  +
  EHU01541.1 368 QATVDEIARLGIVSARVRAILAFAAACN 395
                 4566888999999999999998777655 PP

>> Ada_Zn_binding  Metal binding domain of Ada
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   3.7   4.7e-32   8.4e-29       2      65 .]       7      70 ..       6      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 4.7e-32
                    HHHHHHHTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEEESSHHHHHHTT-EEETTTTTS CS
  Ada_Zn_binding  2 rwqavlardaradgsFvyavkttgiyCrpsCparlPkrenveFfdtaaeAeaagfrpCkrcrPd 65
                     +qa+++rd+r+dg F+++v++tgiyCrp+Cp++ P ++n+ Ff++a++Ae+a frpC rcrP+
      EHU01541.1  7 AYQALTSRDTRFDGVFFVGVTSTGIYCRPICPVKAPMQKNCLFFNSAEAAEKAHFRPCLRCRPE 70
                    69*************************************************************6 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.3   3.5e-25   6.2e-22       1      80 [.     106     184 ..     106     185 .. 0.97
   2 ?   -2.6   0.0       3.9   6.9e+03      11      73 ..     336     347 ..     332     350 .. 0.54

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 3.5e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +aa++g+s+r+L+r+++++lg+tp e+ + +R+  A++lL+e t l+v+eiA+a+GF++l+rF++ f++++ +tP++ r+
  EHU01541.1 106 IAAEFGISARQLRRIVQQELGVTPLELKQIRRMLLAKQLLTE-TTLPVTEIAYASGFGSLRRFNDVFQARYRMTPGALRK 184
                 69**************************************86.***********************************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
                 HHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS CS
      HTH_18  11 tLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfge 73 
                 tL+ +f + +g                                                   e
  EHU01541.1 336 TLSSRFAQAFG---------------------------------------------------E 347
                 45555555544...................................................4 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.2e-07   0.00058      12      39 ..     104     131 ..     102     132 .. 0.93
   2 !   20.9   0.0   1.6e-07   0.00029       7      42 .]     148     184 ..     145     184 .. 0.92
   3 ?   -1.2   0.0       1.3   2.3e+03      23      34 ..     335     346 ..     334     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.2e-07
                 HHHHHHTTSSHHHHHHHHHHHSSS-HHH CS
    HTH_AraC  12 ediAdelgfSrsyFsrlFkketGmtPsq 39 
                 + iA+e+g+S ++++r+ ++e+G+tP +
  EHU01541.1 104 DAIAAEFGISARQLRRIVQQELGVTPLE 131
                 679***********************87 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.6e-07
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 t l +++iA + gf S + F  +F++++ mtP + r+
  EHU01541.1 148 TTLPVTEIAYASGFgSLRRFNDVFQARYRMTPGALRK 184
                 5689****************************99985 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHSS CS
    HTH_AraC  23 syFsrlFkketG 34 
                 +++s +F +++G
  EHU01541.1 335 TTLSSRFAQAFG 346
                 6899*****999 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.1   5.6e+03      12      34 ..      79      97 ..      74     155 .. 0.61
   2 !   34.6   0.0   1.2e-11   2.1e-08       1      84 [.     321     451 ..     321     468 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHHS..HCSHHHHH CS
                xxxxxxxxxxxxxxx..xxxxxxxx RF
     HhH-GPD 12 eranriierlferfg..fptpedla 34
                 +a r+  rl++r++         +
  EHU01541.1 79 DNAHRVADRLVQRIEegL------L 97
                555666666666654331......2 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 1.2e-11
                 HHHHHHTTS-HHHHHHHHHHHHHHHS.............HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg.............fptpedladadeekLrelirelGfyrrKakyikelArilv.................... 66 
                 v+ail qq+++++a+++  r++++fg             + +p+++a+a+ ++++ l    G  + +++ i ++A ++                     
  EHU01541.1 321 VRAILGQQVTVKAATTLSSRFAQAFGepcttpfpdlsrySAQPQRIAQATVDEIARL----GIVSARVRAILAFAAACNegslrfnatlspddimarlv 415
                 789************************************99****************....**********************9999999999999999 PP

                 ..................S-SSS--TTSHHHHHHHH CS
                 ..................xxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ..................gkpdvlivvDvhvrrilk 84 
                                   + pd+++  D+ vr+ l+
  EHU01541.1 416 alpgigpwtahyiamralRWPDAFPKEDIAVRNNLG 451
                 888888888888888888888888888888887665 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2     4e-06    0.0072       2      43 ..      81     119 ..      80     123 .. 0.93
   2 ?    3.6   0.0     0.029        52       8      34 ..     134     159 ..     132     163 .. 0.86
   3 ?    2.9   0.1     0.048        87      23      46 ..     249     272 ..     245     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHH CS
        GntR   2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvRe 43 
                 + +v++rL ++I +g l++++ L    ++aaefg+s+  +R+
  EHU01541.1  81 AHRVADRLVQRIEEGLLEAHSGL---DAIAAEFGISARQLRR 119
                 579********************...**********999886 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.029
                 HHHHHHHTTSS-TTSB---HHHHHHHH CS
        GntR   8 rLredIlsgelrpGdkLPsereLaaef 34 
                 ++r+++l+++l  +++L ++ e+a + 
  EHU01541.1 134 QIRRMLLAKQLLTETTL-PVTEIAYAS 159
                 79***************.899998665 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.048
                 B---HHHHHHHHTS-HHHHHHHHH CS
        GntR  23 kLPsereLaaefgVsrttvReALr 46 
                  LP+ ++L+ ef  s t+v  AL 
  EHU01541.1 249 HLPAKQALQVEFTRSLTPVLPALL 272
                 69*****************99985 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.5e-05     0.027      13      35 ..     100     123 ..      88     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
      HTH_28  13 h.svreaArelgisrrtvyrWikr 35 
                 h   +++A+e+gis r+++r +++
  EHU01541.1 100 HsGLDAIAAEFGISARQLRRIVQQ 123
                 34789****************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.4e-05      0.06      22      49 ..     105     130 ..     102     131 .. 0.87
   2 ?   -2.8   0.0       3.5   6.4e+03      17      27 ..     282     292 ..     271     293 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
      HTH_23  22 eIAreLgvsrrTvyrwlkryreeGlegl 49 
                 +IA+e+g+s r+++r+++   e G+ +l
  EHU01541.1 105 AIAAEFGISARQLRRIVQQ--ELGVTPL 130
                 7****************99..7777665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.5
      HTH_23  17 GlsvreIAreL 27 
                  + +++IA++L
  EHU01541.1 282 NAQPQRIAEHL 292
                 67789999998 PP

>> MHYT  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.1   9.1e+03      37      49 ..     384     396 ..     377     403 .. 0.62
   2 ?   12.0   0.0    0.0001      0.18       1      18 [.     419     436 ..     419     448 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.1
        MHYT  37 vasvlAlalavrr 49 
                 v ++lA+a+a+++
  EHU01541.1 384 VRAILAFAAACNE 396
                 4466777766665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
        MHYT   1 GlgIwsMHYtGMaAftlp 18 
                 G+g w+ HY++M A++ p
  EHU01541.1 419 GIGPWTAHYIAMRALRWP 436
                 99************9987 PP

>> Integrase_Zn  Integrase Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00025      0.45       9      32 ..     100     123 ..      98     123 .. 0.94
   2 ?   -3.0   0.0       4.3   7.6e+03      14      26 ..     181     193 ..     178     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
  Integrase_Zn   9 HvNakaLrkkFgitrkqAreIVqs 32 
                   H++  a++ +Fgi+ +q r+IVq+
    EHU01541.1 100 HSGLDAIAAEFGISARQLRRIVQQ 123
                   99999*****************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.3
  Integrase_Zn  14 aLrkkFgitrkqA 26 
                   aLrk+ +++++ A
    EHU01541.1 181 ALRKSSNLSPQPA 193
                   99**999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3597.72
//
Query:       EHU01542.1  [L=169]
Description: methylated-DNA-[protein]-cysteine methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-31  106.9   0.0    6.3e-31  106.3   0.0    1.2  1  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
    7.7e-10   39.4   0.0    1.1e-09   38.9   0.0    1.3  1  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0     7e-35   6.3e-31       1      79 [.      78     156 ..      78     157 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 7e-35
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaE 79 
                    afq++Vw++l +Ip+G++ +Y +iA+++g+p a+raVg+a+++npl+i+ PcHRV+ga+gkl+g+aggl+ k+ lL+ E
     EHU01542.1  78 AFQKKVWQALLSIPFGETRSYRQIAEQIGHPAAVRAVGAANGRNPLSIVAPCHRVIGANGKLTGFAGGLTVKAFLLQLE 156
                    6****************************************************************************99 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.3e-13   1.1e-09       1      76 [.       1      73 [.       1      74 [. 0.93

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-13
                     --EEEEEEETTEEEEEEEETTCEEEEEEEC-HHHCCHHHCCCTTTSC..CHCCHHHHHHHHHHHHHHHHS--B-SHCH CS
  Methyltransf_1N  1 alyytlidsplgrlllagdEkgllaidlldkdtselkelpkllkqde..elpalaelkqaleeYfageekpaltlPld 76
                     ++y+ +  +p+g+l l+++ +gl ai ++d+  +     p+l ++++  + p l e + +l+eYfag +   + lPld
       EHU01542.1  1 MYYCKPVITPVGELTLIASDRGLAAILWQDEVRR----HPRLSPRERddNHPVLRETETQLREYFAGTRR-VFDLPLD 73
                     799****************************996....777877777778********************.******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1332.90
//
Query:       EHU01543.1  [L=353]
Description: quinolinate synthase, subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-101  339.5   0.1   1.8e-101  339.3   0.1    1.0  1  NadA      Quinolinate synthetase A protein


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.3   0.1  9.9e-106  1.8e-101       1     298 [.      31     339 ..      31     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: 339.3 bits;  conditional E-value: 9.9e-106
                 HHHHHHHHHHTEEEEEETTS-HHHHHH-S....EEE-HHHHHHHCCC-SSSEEEEES-HHHHHHHHHHSTTSEEE-SSTT---HHHCT--HHHHHHHHH CS
        NadA   1 eeikelkkeknavilaHnYqedeiqeiad....fvGDSleLarkaaeteaevivfcGVhFMaetakiLspekkvllpdleagCsladmitaeeveelke 95 
                 e+ik+l k++nav++aH+Y++++iq++a+    +v+DSle+ar+ +++ a +++++GV+FM+etakiLspek+vl+p+lea+Csl+  ++ e ++++++
  EHU01543.1  31 EKIKALLKARNAVMVAHYYTDPDIQALAEetggCVSDSLEMARFGSQHPATTLLVAGVRFMGETAKILSPEKTVLMPTLEAECSLDLGCPIEAFTAFCD 129
                 589**************************9999999*************************************************************** PP

                 HSTTS-EEEESSS-HHHHTT-SEEE-TTTHHHHHHHSS..-SEEEEES-HHHHHHHHHHH.SEEEEESSSS-GCGGG--CHHHHHHHHCSTT-EEEE-T CS
        NadA  96 elpdaavvtYvNssaevKalsdivcTSsnavkvvealk..ekkilflPDqnLgryvakklgekkiilwkgaCsvHeefkaeeveelkeehpdakvlvHP 192
                 ++pd++vv+Y N+sa+vKa +d+v+TSs av+++e+l+  ++ki+++PD++Lgryv++k g+ ++++w+gaC+vH+efk+++++++k+ +pda+vlvHP
  EHU01543.1 130 AHPDRTVVVYANTSAAVKARADWVVTSSIAVELIEHLDslGEKIIWAPDRHLGRYVTQKSGA-DVLCWQGACIVHDEFKTQALQRMKALYPDAAVLVHP 227
                 *************************************779*******************987.6*********************************** PP

                 TS-HHHHHCSSEE--HHHHCCCCGTTSSSCEEEES-THHHHHHHHH-TTSEEE........ECS.SSS.STTGGG--HHHHHHHHHHT-S..B----HH CS
        NadA 193 EckeevveaadvvgSTsqiikavkeseakefiigTelglverlkkeapekefials...aeaae.eav.CetMkkitleklleaLeelee.eeikvdee 285
                 E+++++v++ad+vgSTsq+i+a+k+ ++ ++i++T+ g+++++++++p+k ++++    + a++ +++ C++M+++ l+ ++eaL++  + +ei+vd++
  EHU01543.1 228 ESPQAIVDLADAVGSTSQLIQAAKTLPHPQMIVATDRGIFYKMQQAVPDKILLEAPtagEGATCrSCAhCPWMAMNGLQAIAEALTSGGRaHEIHVDAA 326
                 *****************************************************8887653444443335*****************9777578****** PP

                 HHHHHHHHHHHHH CS
        NadA 286 vaekAkkalerml 298
                 ++e+A ++l+rml
  EHU01543.1 327 LREAALVPLNRML 339
                 ************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 3072.30
//
Query:       EHU01544.1  [L=278]
Description: putative nicotinamide mononucleotide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-48  164.0  30.6    4.9e-48  163.4  30.6    1.3  1  NMN_transporter  Nicotinamide mononucleotide transporter
  ------ inclusion threshold ------
        3.4    7.6  10.1        1.8    8.4   0.1    3.1  3  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> NMN_transporter  Nicotinamide mononucleotide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4  30.6   5.5e-52   4.9e-48       1     175 [.      23     226 ..      23     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 5.5e-52
  NMN_transporter   1 slleligallgllsvllaarrniwnwpvgiisvllyivvffqaglygdallqlfyivmsiyGwirWsknkkk.....avrkltkkewlilllvi 89 
                      s++e++g+l+gll+++la+ ++i n+ +g+i+v+l++v+ffq++ly+++llqlf++++++yGw++Ws+++ +     ++r+l+  + + +++v+
       EHU01544.1  23 SWIEAVGTLAGLLCIWLASLEKIANYAFGLINVTLFAVIFFQIQLYASLLLQLFFFAANVYGWYAWSRQTIDnqaalTIRWLPLPKAIGWAAVC 116
                      7*******************************************************************88667775559*************** PP

  NMN_transporter  90 vlgtallgfllkal........................tdaalpvlDafttvlsivaqllmarryvenWllWivvdvvsvvlyllkglyvtail 159
                      v+++ l++++++ +                        +++a+p++Da+++vlsiva++lm+r+yvenWllW+v++v+sv++++ +g+y++++ 
       EHU01544.1 117 VIAVGLMTIYIDPVfafltrtavalmnalgftvampalQPDAFPFWDACLMVLSIVAMVLMTRKYVENWLLWVVINVISVMVFARQGVYAMSLE 210
                      *****98888888446677777778888888888888899999*************************************************** PP

  NMN_transporter 160 yvvylvlavyglleWr 175
                      y++++++a++g + W 
       EHU01544.1 211 YAILTLIALNGSRMWI 226
                      ***************5 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0002       1.8       3      39 ..       6      42 ..       6      48 .. 0.92
   2 ?    4.1   1.6    0.0046        41       7      37 ..      54      87 ..      51     103 .. 0.85
   3 ?   -3.5   0.2       1.1   9.7e+03      28      36 ..     168     176 ..     164     180 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0002
    LapA_dom  3 tqpVtvnflfaqvelpLsllllvafgiGallgwllsl 39
                tq + v++ ++ + + Ls + +v  ++G+l +wl+sl
  EHU01544.1  6 TQNILVHIPLGATGYDLSWIEAVGTLAGLLCIWLASL 42
                6889999999999**********************98 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0046
    LapA_dom  7 tvnfl...faqvelpLsllllvafgiGallgwll 37
                +v ++   f+q++l  slll ++f++  + gw +
  EHU01544.1 54 NVTLFaviFFQIQLYASLLLQLFFFAANVYGWYA 87
                66677777******************99999965 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.1
    LapA_dom  28 giGallgwl 36 
                 ++ +++++l
  EHU01544.1 168 VLSIVAMVL 176
                 333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2119.63
//
Query:       EHU01545.1  [L=340]
Description: zinc efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-51  173.9  15.9    3.9e-51  173.6  15.9    1.1  1  Cation_efflux  Cation efflux family
  ------ inclusion threshold ------
      0.048   13.4   2.6        3.2    7.4   0.1    2.2  2  7tm_3          7 transmembrane sweet-taste receptor of 3 GCPR
       0.21   11.9   8.4       0.04   14.2   3.7    1.8  2  Vut_1          Putative vitamin uptake transporter


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6  15.9   6.6e-55   3.9e-51       1     199 []      17     209 ..      17     209 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.6 bits;  conditional E-value: 6.6e-55
  Cation_efflux   1 lilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklike 96 
                    l+++++++++++++e+i+g+l++Slallada h+l+d+++ll++lla+ +++++p+er++fG+ rl +l+a+v++l l+g+ + +++ea++++   
     EHU01545.1  17 LMAAFAVTALFMVAEVIGGWLSGSLALLADAGHMLTDTAALLMALLAVQFAKRKPNERHTFGLLRLTTLAAFVNALALIGITILIVWEAVERFT-- 110
                    578999****************************************************************************************.. PP

  Cation_efflux  97 gereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllk 192
                    +++ +  gl+l++a+++l+ n++++++l++ g + ++ +++aaalhv+gD+l+s+g++v+a++il++n +    +Dp++s+++++++l sa++ll+
     EHU01545.1 111 HPQPVTGGLMLGIAIAGLLANILSFWLLHH-GSEEKNLNVRAAALHVMGDLLGSVGAIVAAVIILFTNWTP---IDPILSIVVSMLVLRSAWSLLR 202
                    8999************************96.5789********************************9998...********************** PP

  Cation_efflux 193 eslseLl 199
                    esl eLl
     EHU01545.1 203 ESLHELL 209
                    *****97 PP

>> 7tm_3  7 transmembrane sweet-taste receptor of 3 GCPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.8    0.0017        10      82     122 ..      66     109 ..      16     139 .. 0.69
   2 ?    7.4   0.1   0.00054       3.2      66     123 ..     123     186 ..     113     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0017
       7tm_3  82 fqsrkgr..kskslrd...kqllllvlllvlvqviillvwtlidpl 122
                 f++rk++  +  ++     ++l+ +v +l l+ ++il+vw +++++
  EHU01545.1  66 FAKRKPNerH-TFG-LlrlTTLAAFVNALALIGITILIVWEAVERF 109
                 3333222112.122.224699999999999**********998642 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00054
       7tm_3  66 lvfsallvKtwrvlrifqs.rkgrkskslrd......kqllllvlllvlvqviillvwtlidp.ls 123
                 ++++ ll+  +  +++    ++  k+ ++r        +ll  v+++v++ +i+++ wt idp ls
  EHU01545.1 123 IAIAGLLANILSFWLLHHGsEE--KNLNVRAaalhvmGDLLGSVGAIVAAVIILFTNWTPIDPiLS 186
                 5555555554444444332211..233333344556789********************9999543 PP

>> Vut_1  Putative vitamin uptake transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.23   1.4e+03      22      52 ..       9      39 ..       4      69 .. 0.56
   2 ?   14.2   3.7   6.7e-06      0.04      28     142 ..      81     201 ..      78     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
       Vut_1 22 Gkkaarkvvllgflanllalillllalllpa 52
                G+  +r+  +++f++++l+++  ++  +l  
  EHU01545.1  9 GQDTNRTRLMAAFAVTALFMVAEVIGGWLSG 39
                6666777777777777777776666666665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.7e-06
       Vut_1  28 kvvllgflanllalillllalllpa.ealesvfgltprivlasliaylvsqlldvyvfhrlkkltkgkklwlrnigStlvsqlvdtlifvtiaflg... 122
                 ++  l++++n+lali +++ ++++a e +     +t  ++l+  ia l++++l  +++h+     ++k+l +r+++  +++ l+ ++  ++ a ++   
  EHU01545.1  81 RLTTLAAFVNALALIGITILIVWEAvERFTHPQPVTGGLMLGIAIAGLLANILSFWLLHHGS---EEKNLNVRAAALHVMGDLLGSVGAIVAAVIIlft 176
                 6778999*****************97777777778889999999999999999999999996...7888****99999999999998888888655788 PP

       Vut_1 123 .....eqlleiilsqyliklliall 142
                      + +l+i++s +++  +++ll
  EHU01545.1 177 nwtpiDPILSIVVSMLVLRSAWSLL 201
                 9999*99999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2385.95
//
Query:       EHU01546.1  [L=1023]
Description: Hpt sensor hybrid histidine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-38  132.4   0.0      2e-23   83.0   0.0    2.5  2  SBP_bac_3     Bacterial extracellular solute-binding proteins
    5.1e-30  104.3   0.0      1e-29  103.3   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.7e-14   53.6   5.0      7e-14   51.6   2.4    2.9  2  HisKA         His Kinase A (phospho-acceptor) domain
    4.1e-10   39.8   0.1    1.2e-09   38.3   0.1    1.9  1  Response_reg  Response regulator receiver domain
    6.4e-08   32.7   2.0    6.4e-08   32.7   2.0    2.9  2  Hpt           Hpt domain
    8.2e-05   22.6   0.0    0.00021   21.2   0.0    1.7  1  HATPase_c_2   Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.021   15.0   0.4      0.055   13.6   0.4    1.7  1  KIP1          KIP1-like protein
       0.13   11.2   0.1       0.21   10.5   0.1    1.2  1  Miga          Mitoguardin
       0.23   11.3   0.0       0.48   10.2   0.0    1.4  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.1e-15   2.2e-12       6     222 ..      55     261 ..      49     264 .. 0.87
   2 !   83.0   0.0     1e-26     2e-23       2     222 ..     291     499 ..     290     502 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.1e-15
                 -S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTCCHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   6 dadypPfsykdengeltGfdvdlakaiakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskissik 103
                 d++++P+ ++   + l G+d d++ a+ + +g ++ +  + +  +l+ al++g++D+a  ++   p  +  v  s+++fs++++++ +++ +++   ++
  EHU01546.1  55 DENTAPWAMHV-GNDLYGIDADYLAALHQLTGAQFSLHLYaTQPALLSALQAGQIDFAL-GMLAPPFPAGAV-ASDSWFSSPLRIYRNQQ-NQRAVMFN 149
                 56999******.**************************999****************99.788888887777.5899*********9955.55555555 PP

                 SCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 104 sladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseLrkai 202
                       + +++++  + a+  l  +l++    +++ ++ +al  L n + d+vvad++++  l+ + + +++++++  +++ ++   + + d++L +++
  EHU01546.1 150 ----SDNAQLAISEQTLAQ--LPPALAARHHWRTYGSDLQALYTLLNQQNDYVVADETSAGFLLSQLQQGQIYQIASGIDAGQLTLRAVSRDPALIAWL 242
                 ....345678999998887..4433444667899*999999999******************************************************* PP

                 HHHHHHHHHTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 203 nkalaelkadgtlakisekW 222
                 n+ l++l a+  ++ ++++W
  EHU01546.1 243 NQSLRQLPAE-LMSTLQARW 261
                 *******998.899999999 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 1e-26
                 EEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEE.TTSHG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
   SBP_bac_3   2 rvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrk.kdask 98 
                 + + +ad+ P+sy+d ng++ G+ +dl++a+a+++g++++  +v + +++ + l++ +v +      ++p   e+   s p ++a  +++ r+ +   +
  EHU01546.1 291 TYAAEADNYPWSYRDSNGTPRGYGIDLLNAVAQSTGLRFTPHWVsNPQQAATLLAQHQVMLQL----MQPLNGETQSTSLPVWRALWGIYSRQpA---A 382
                 6688999************************************99************876644....68888999999**************633...3 PP

                 TCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  99 issiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgds 196
                  s ++   dL+gk++g+ ++  a+ l+      ++ +++f++ ++++ aL++g++da+v +  ++++ ++ ++d++++l+ +++  + ++ai+v ++++
  EHU01546.1 383 GSHWS---DLAGKRIGILQDDLAQRLVPD----TIPVQRFADRNSLYDALATGQIDALVDNVLSARWRIASRNDPHIHLAfAASDIAWPVAIGVAPDEP 474
                 35565...****************99998....899********************************************9****************** PP

                 HHHHHHHHHHHHHHHTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 197 eLrkainkalaelkadgtlakisekW 222
                  Lr  +++al+++  d t +++ ++W
  EHU01546.1 475 VLRGLLDRALQQIPVD-TQNQMRDRW 499
                 ****************.999999999 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   5.2e-33     1e-29       2     110 ..     665     772 ..     664     774 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 5.2e-33
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 d +rL+qi++nlv+Na kf t  g i+++++a++ +l+++v+DnG Gip+e++++lf++ +q  ++++ + +g+GlGl i++++v++mgGei+++s+pg
  EHU01546.1 665 DADRLQQIVNNLVTNAFKF-TRHGLIRLTLSATD-KLQLTVSDNGSGIPPEEQPRLFDPWYQaPSGKALSVQGSGLGLFICREMVQRMGGEIHLHSQPG 761
                 789****************.99999999999666.***************************988889999**************************** PP

                 TEEEEEEEEES CS
   HATPase_c 100 rGttftftlpl 110
                 +Gt++t+ lpl
  EHU01546.1 762 KGTEVTLILPL 772
                 *******9997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   2.4   3.5e-17     7e-14       1      66 [.     556     616 ..     556     617 .. 0.96
   2 ?    0.8   0.0      0.25     5e+02      47      58 ..     665     676 ..     659     680 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 3.5e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++++fla+v+HELrtP+ ailg +e+ k      ++ +e+l+ + ++a+ l  l++dl d +rie+
  EHU01546.1 556 MKSQFLATVSHELRTPMQAILGLLELEKQ-----QSSRENLQLLYQSAQSLMTLLNDLQDHARIEN 616
                 699***********************777.....9****************************997 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHH CS
       HisKA  47 earrldhlvedl 58 
                  a+rl+++v++l
  EHU01546.1 665 DADRLQQIVNNL 676
                 589*******99 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   6.3e-13   1.2e-09       1     106 [.     794     899 ..     794     905 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 6.3e-13
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTT....SEEEEEESSTSHHHHHHHHHCT CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpe....lpviiltahseeedavealkag 93 
                   v +vdD+p+++ +++q+l +  + + + +e+g+++l    ++ +dl+++D +mp+ dG+ ll+ +r+++++    +  ++++a ++   + ++    
    EHU01546.1 794 VAVVDDHPTNLIVMQQQLARFAI-QADCFEQGRDLLLADARRPYDLLFIDQMMPRPDGMLLLRVLRRRQRQrggrPLRVLCSADAQ---LLNVQTEP 886
                   789********************.9***********9999999**********************999843233244444554443...55555555 PP

                   ESEEEESSG-HHH CS
  Response_reg  94 addflsKpfdpee 106
                    + +l Kp++ ++
    EHU01546.1 887 HERVLIKPVQLQD 899
                   5666666666655 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4       3.1   6.2e+03      63      66 ..     582     585 ..     541     611 .. 0.53
   2 !   32.7   2.0   3.2e-11   6.4e-08       6      70 ..     937    1001 ..     933    1016 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
                 TSCH CS
         Hpt  63 gele 66 
                 ++++
  EHU01546.1 582 EKQQ 585
                 2222 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 3.2e-11
                  HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHH CS
         Hpt    6 fleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepe 70  
                  +++++e++++ql++a++++d  +la+ aH+LKGs   +G +e  +l+++l d  ++ ++ ++e++
  EHU01546.1  937 LRDTVEKDMAQLRAAIASGDERQLAESAHRLKGSWLLIGIDEGVALCQQLSDRARQHHNISAEWQ 1001
                  678999**********************************************3333344444443 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   0.00021      30     124 ..     667     769 ..     659     770 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
  HATPase_c_2  30 deirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvDev..ey..... 114
                  d+++  v+ ++tNa++  ++    g ++++l s++++l+++v+D+G g +pe++p+   + +      + s + +G+Gl++ +++v  +  e+     
   EHU01546.1 667 DRLQQIVNNLVTNAFKFTRH----GLIRLTL-SATDKLQLTVSDNGSGIPPEEQPRLFDPWYqapsgkALSVQGSGLGLFICREMVQRMggEIhlhsq 759
                  56666777777888888876....8999997.88899**************9998877765599999999*****************99887778876 PP

  HATPase_c_2 115 dgegnvvtms 124
                   g+g++vt++
   EHU01546.1 760 PGKGTEVTLI 769
                  7779999885 PP

>> KIP1  KIP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   2.8e-05     0.055       5      64 ..     550     610 ..     549     614 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
        KIP1   5 dshisskqskwLqetlseldekvkemlklie.edadsfakraemyykkrpeLielveefyr 64 
                 + h +  +s++L +  +el + ++++l l+e e ++s+++  ++ y+  + L++l+++++ 
  EHU01546.1 550 AEHANAMKSQFLATVSHELRTPMQAILGLLElEKQQSSRENLQLLYQSAQSLMTLLNDLQD 610
                 5799999***********************8355678889999***************986 PP

>> Miga  Mitoguardin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00011      0.21      17      86 ..     518     596 ..     508     623 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
        Miga  17 vllavalgavv.lalla.rylkrrrekkkqkssaeqeelakevlkta......svkkr.asekksrssssksndtlsla 86 
                 vl+a+++++vv l+lla ry+++rr +++++++ + +++++++l t       ++++     +  +++ss++n +l  +
  EHU01546.1 518 VLAAAGVAIVVlLLLLArRYWQQRRDRQQREQAEHANAMKSQFLATVshelrtPMQAIlGLLELEKQQSSRENLQLLYQ 596
                 5666666664414455625778887777777777777788888777733333222222111223344445555555444 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024      0.48       7      76 ..     673     737 ..     668     751 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
  HATPase_c_3   7 laelvdNsld.AdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiG 76 
                  +  lv N++   +   + ++++    ++ ++++ D+G+G+++ee  + + +  ++++     + l+  G G
   EHU01546.1 673 VNNLVTNAFKfTRHGLIRLTLSAT--DKLQLTVSDNGSGIPPEEQPRLFDPWYQAPS----GKALSVQGSG 737
                  567888888855555588888885..579***************9999999888888....3455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6783.20
//
Query:       EHU01547.1  [L=194]
Description: LuxR family DNA-binding response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-20   72.0   1.1    2.6e-20   71.7   0.3    1.5  2  GerE          Bacterial regulatory proteins, luxR family
    6.3e-19   68.2   0.0    1.5e-18   67.0   0.0    1.6  2  Response_reg  Response regulator receiver domain
    2.5e-05   23.9   0.1    6.8e-05   22.5   0.1    1.7  1  Sigma70_r4_2  Sigma-70, region 4
    0.00034   20.3   0.3      0.001   18.8   0.0    1.9  2  HTH_23        Homeodomain-like domain
    0.00072   19.1   0.3     0.0031   17.1   0.2    2.2  2  HTH_24        Winged helix-turn-helix DNA-binding
     0.0012   18.4   0.0     0.0053   16.2   0.1    2.1  2  Sigma70_r4    Sigma-70, region 4
      0.003   17.6   0.0       0.08   13.0   0.0    2.3  2  HTH_29        Winged helix-turn helix
  ------ inclusion threshold ------
      0.027   14.2   0.0      0.056   13.2   0.0    1.5  1  HTH_38        Helix-turn-helix domain
      0.041   14.0   0.1       0.13   12.3   0.1    1.9  1  HTH_20        Helix-turn-helix domain
      0.045   13.2   0.1       0.11   11.9   0.0    1.7  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.049   13.7   0.0        0.1   12.7   0.0    1.5  1  HTH_7         Helix-turn-helix domain of resolvase
      0.095   12.8   0.1       0.53   10.5   0.0    2.2  2  HTH_28        Helix-turn-helix domain
       0.12   12.4   0.3       0.28   11.2   0.3    1.7  1  HTH_11        HTH domain
       0.12   12.3   0.6       0.32   10.9   0.5    1.8  1  HTH_5         Bacterial regulatory protein, arsR family
        3.9    7.4   5.0        1.8    8.4   0.1    2.6  3  HTH_10        HTH DNA binding domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   5.6e+03      41      48 ..      64      71 ..      63      71 .. 0.84
   2 !   71.7   0.3   2.2e-23   2.6e-20       2      56 ..     135     189 ..     134     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
                HHHHHT-S CS
        GerE 41 imkKLnvk 48
                i+++L+v+
  EHU01547.1 64 ILRRLKVH 71
                89999998 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 2.2e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +L+++Er+vL+lla+G+sn +IAe+l+iS+kTV++hk+ni++K +++s vel++l
  EHU01547.1 135 PLTSKERQVLALLASGLSNLQIAEQLHISNKTVSTHKKNILEKTGARSVVELADL 189
                 69**************************************************975 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.3e-21   1.5e-18       2     111 ..       5     114 ..       4     115 .. 0.91
   2 ?   -2.2   0.0       3.8   4.5e+03      13      31 ..     170     188 ..     164     192 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.3e-21
                   EEESSSHHHHHHHHHHHHHTTEEEEE.EESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeeva.eaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   l++dD+plv  +l  +l ++ +  ++   ++++ a + + +  +d+i+lDi +p+ dGle+l++++ + p++pv+i++a++++ ++ +a  +ga ++
    EHU01547.1   5 LLIDDHPLVEVALDAALSQSPV-PIQlISASSEHAARPYLQLPPDIIVLDIGLPDGDGLEILRRLKVHLPDCPVLIYSAQQSSHYIRRAQALGAAGY 100
                   89****************9999.67745556666677777889****************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++K  ++++Ll+a+
    EHU01547.1 101 VVKSQRMAHLLSAI 114
                   *********99887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.8
                   HHHHHHHHTTEEEEEEESS CS
  Response_reg  13 llrqlleeegyeevaeaed 31 
                     +++le+ g ++v e +d
    EHU01547.1 170 HKKNILEKTGARSVVELAD 188
                   5578999999888887666 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   5.7e-08   6.8e-05      11      51 ..     136     175 ..     136     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.7e-08
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsRAr 51 
                   L+ ++r+++ l    gls  +IAe+l+is +tV ++ +  +
    EHU01547.1 136 LTSKERQVLAL-LASGLSNLQIAEQLHISNKTVSTHKKNIL 175
                   7889*******.68********************9977655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.8   1.2e+04       5      11 ..      89      95 ..      88      97 .. 0.74
   2 !   18.8   0.0   8.4e-07     0.001       9      40 ..     142     173 ..     136     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.8
      HTH_23  5 reRlril 11
                ++R+++l
  EHU01547.1 89 IRRAQAL 95
                5788887 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 8.4e-07
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ++l lla Gls  +IA++L++s  Tv+  +k 
  EHU01547.1 142 QVLALLASGLSNLQIAEQLHISNKTVSTHKKN 173
                 57777777******************976665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.6e-06    0.0031       5      37 ..     140     170 ..     136     173 .. 0.84
   2 ?   -2.4   0.0       3.1   3.7e+03      10      25 ..     173     188 ..     173     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
      HTH_24   5 drkILelLqknprisqreLAerlglSpstvnrr 37 
                 +r++L lL    ++s+ ++Ae+l++S  tv+++
  EHU01547.1 140 ERQVLALLAS--GLSNLQIAEQLHISNKTVSTH 170
                 5666666666..9*****************998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
      HTH_24  10 elLqknprisqreLAe 25 
                 ++L+k +  s  eLA+
  EHU01547.1 173 NILEKTGARSVVELAD 188
                 6888888889999996 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.5   5.3e+03      20      35 ..       9      24 ..       7      26 .. 0.75
   2 !   16.2   0.1   4.4e-06    0.0053       5      47 ..     136     177 ..     135     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
                T--HHHHHHHHTS-HH CS
  Sigma70_r4 20 glTleEIgerlgiSre 35
                +++l E++    +S++
  EHU01547.1  9 DHPLVEVALDAALSQS 24
                7789999987777775 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.4e-06
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrk 47 
                 L+ +er+vl l    gl+  +I+e+l+iS  +V+ ++k+ l+k
  EHU01547.1 136 LTSKERQVLALLA-SGLSNLQIAEQLHISNKTVSTHKKNILEK 177
                 8999999999975.6778899******************9997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.14   1.7e+02      24      55 ..      80     109 ..      75     113 .. 0.71
   2 !   13.0   0.0   6.7e-05      0.08       3      34 ..     142     172 ..     141     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.14
      HTH_29  24 lsrrtvyrwlkrfeegGlaalldrrrsgrprn 55 
                 +s ++  ++++r ++ G+a+    + s r ++
  EHU01547.1  80 YSAQQSSHYIRRAQALGAAGYVV-K-SQRMAH 109
                 67788899*********999554.2.355555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.7e-05
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwlk 34 
                 q+l+lla G+s   qiA++l +s +tv +++k
  EHU01547.1 142 QVLALLASGLS-NLQIAEQLHISNKTVSTHKK 172
                 89********8.***************99988 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.7e-05     0.056       5      39 ..     136     169 ..     135     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTIsR 39 
                 L+  eR +  +lla Gls+ +IA +L+ s  T+s 
  EHU01547.1 136 LTSKER-QVLALLASGLSNLQIAEQLHISNKTVST 169
                 788899.667899********************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.13      13      50 ..     141     177 ..     138     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHH.HHHHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHL.rvLee 50 
                 r +l++L  a gl+  ++ae+l +s +t+s H  ++Le+
  EHU01547.1 141 RQVLALL--ASGLSNLQIAEQLHISNKTVSTHKkNILEK 177
                 7899999..***********************6555555 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         7   8.4e+03      28      40 ..      10      22 ..       4      23 .. 0.67
   2 ?   11.9   0.0   9.6e-05      0.11      17      45 ..     140     168 ..     140     169 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7
  HTH_Tnp_ISL3 28 rsvkavArqlgvS 40
                   +  +vA +  +S
    EHU01547.1 10 HPLVEVALDAALS 22
                  3777888887776 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9.6e-05
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVw 45 
                   e+++l+ll ++ s  ++A+ql++S +TV 
    EHU01547.1 140 ERQVLALLASGLSNLQIAEQLHISNKTVS 168
                   799************************95 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.6e-05       0.1       7      38 ..     138     167 ..     134     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.6e-05
                 -HHHHGGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7   7 skndinrvvkLleeGisiskIAkevnisRsTv 38 
                 sk+   +v++Ll++G s  +IA+++ is  Tv
  EHU01547.1 138 SKE--RQVLALLASGLSNLQIAEQLHISNKTV 167
                 555..79*********************9998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.9   2.3e+03      33      45 ..      89     101 ..      80     106 .. 0.78
   2 ?   10.5   0.0   0.00044      0.53       4      34 ..     142     172 ..     141     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
      HTH_28  33 ikryeegGiagLv 45 
                 i+r ++ G ag v
  EHU01547.1  89 IRRAQALGAAGYV 101
                 8899999988865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00044
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWik 34 
                 +++ lla+G s  ++A++l+is  tv+   k
  EHU01547.1 142 QVLALLASGLSNLQIAEQLHISNKTVSTHKK 172
                 78999999******************98766 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00024      0.28       3      43 ..     141     179 ..     139     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
      HTH_11   3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaL.eelg 43 
                 +q+l lL  a g +s  ++Ae+L++S +tv  + k + e++g
  EHU01547.1 141 RQVLALL--ASG-LSNLQIAEQLHISNKTVSTHKKNIlEKTG 179
                 6677777..333.88889************998776656555 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00027      0.32      15      35 ..     150     170 ..     138     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
                 SEEHHHHHHHHTS-HHHHHHH CS
       HTH_5  15 elcvcelaeelglsqstvShH 35 
                  l+  ++ae+l++s  tvS H
  EHU01547.1 150 GLSNLQIAEQLHISNKTVSTH 170
                 367779*************** PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.9   4.6e+03      37      48 ..      82      93 ..      81      94 .. 0.76
   2 ?    0.1   0.1      0.61   7.3e+02       1      10 [.     136     145 ..     136     147 .. 0.90
   3 ?    8.4   0.1    0.0015       1.8      28      50 ..     155     177 ..     151     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.9
      HTH_10 37 kstlsehLrkae 48
                ++  s ++r+a+
  EHU01547.1 82 AQQSSHYIRRAQ 93
                566788999997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.61
      HTH_10   1 LTdkqlevlk 10 
                 LT k+++vl+
  EHU01547.1 136 LTSKERQVLA 145
                 8*******96 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0015
      HTH_10  28 eLAkelGIskstlsehLrkaesk 50 
                 ++A++l Is+ t+s h +++ +k
  EHU01547.1 155 QIAEQLHISNKTVSTHKKNILEK 177
                 79**************8888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1523.77
//
Query:       EHU01548.1  [L=117]
Description: putative secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-52  177.2  15.6    1.4e-52  177.0  15.6    1.0  1  YbgS      YbgS-like protein
  ------ inclusion threshold ------
        3.4    7.7   5.2         17    5.5   5.2    2.1  2  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> YbgS  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0  15.6   1.6e-56   1.4e-52       1     120 []       2     117 .]       2     117 .] 0.99

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 1.6e-56
        YbgS   1 mkklailfltaaltlgsGaalaadsnnGqansaadaGavagdakqnvaPnkvdnskinngstntnstatksttdsdklskdevhkntmCkdGkCPdink 99 
                 m+k+a++fltaa+tlgsGaa+aa   nG++n+aa+aGavag+a++n++Pnkvdnskinn++t+++s++++st++s++++++e+++n++CkdGkCPdink
  EHU01548.1   2 MNKFALIFLTAAMTLGSGAAMAA---NGNSNQAAAAGAVAGGANENLPPNKVDNSKINNTGTEMSSPTRDSTSSSKHMTANEIDQNSQCKDGKCPDINK 97 
                 9**********************...8************************************************************************ PP

        YbgS 100 kvetgeGvgsdvntktdGttq 120
                 kv+t++G g++vntktdGttq
  EHU01548.1  98 KVHTKKG-GGHVNTKTDGTTQ 117
                 *******.************9 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.2    0.0019        17       2      24 ..       8      30 ..       7      45 .. 0.81
   2 ?   -0.1   0.1       0.1   9.3e+02      11      27 ..      32      48 ..      30      56 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0019
     PepSY_2  2 aalalalallaaaAlAgrrdtds 24
                ++l++a++l ++aA+A+   +++
  EHU01548.1  8 IFLTAAMTLGSGAAMAANGNSNQ 30
                6899************6665554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.1
     PepSY_2 11 laaaAlAgrrdtdspka 27
                +aa A+Ag   ++ p++
  EHU01548.1 32 AAAGAVAGGANENLPPN 48
                67888898887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 962.33
//
Query:       EHU01549.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.0    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.1   0.0  4.7e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU01549.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.7e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01549.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01549.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01549.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01549.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01549.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01549.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01549.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01549.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01549.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01549.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU01549.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01549.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01549.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01549.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01549.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01549.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01549.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01549.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01549.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01549.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01549.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01549.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01549.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01549.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01549.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01549.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01549.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01549.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01549.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01549.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01549.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01549.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 3882.35
//
Query:       EHU01550.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01550.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 890.67
//
Query:       EHU01551.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01551.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01551.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01551.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01551.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 862.74
//
Query:       EHU01552.1  [L=97]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-34  118.5   0.0    1.1e-34  118.3   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   6.3e-39   1.1e-34      12     100 ..       1      88 [.       1      89 [. 0.98

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 6.3e-39
   TnpB_IS66  12 mRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 mR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01552.1   1 MRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 88 
                 9************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 805.85
//
Query:       EHU01553.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-99  332.1   3.5    1.6e-98  329.7   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.03   12.9   6.9      0.056   12.0   6.9    1.5  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.2    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        7.1    7.3   8.7        7.7    7.2   1.0    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  329.7   0.0  1.9e-101   1.6e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU01553.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 329.7 bits;  conditional E-value: 1.9e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01553.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01553.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01553.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01553.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01553.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01553.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01553.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01553.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01553.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01553.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01553.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01553.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01553.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01553.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01553.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01553.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01553.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01553.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01553.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01553.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01553.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01553.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01553.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01553.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01553.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01553.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01553.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01553.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01553.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01553.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                     1022  (0.0570026); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.40
# Mc/sec: 3889.17
//
Query:       EHU01554.1  [L=326]
Description: hypothetical protein CKS_3678 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2376.25
//
Query:       EHU01555.1  [L=74]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 648.07
//
Query:       EHU01556.1  [L=192]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1533.39
//
Query:       EHU01557.1  [L=671]
Description: hypothetical protein CKS_3681 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-24   83.5   0.1    2.5e-23   82.0   0.1    1.8  1  SLT              Transglycosylase SLT domain
    0.00035   20.5   2.5    0.00035   20.5   2.5    3.5  3  PhageMin_Tail    Phage-related minor tail protein
     0.0065   17.1   0.1      0.023   15.3   0.1    1.9  1  Transglycosylas  Transglycosylase-like domain
  ------ inclusion threshold ------
      0.025   14.4   2.3       0.29   11.0   0.0    3.6  4  UBA_4            UBA-like domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.1   5.5e-27   2.5e-23       5     108 ..     507     606 ..     504     615 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 5.5e-27
                 HHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHH CS
         SLT   5 kaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegtvkk 103
                 k e+ y++++ ll  +a +ESg+n  Avs++ga GL+Q+m+ ta+++gl    + ++++dP+k+++a+a+yL++l+k  +g+l++ala+YN G g+v+k
  EHU01557.1 507 KLEQLYRLPEGLLRSVAITESGGNQFAVSGAGAKGLFQFMDGTARDMGL----KGNDVFDPAKSAQAAARYLSQLLKANGGNLEKALASYNWGLGNVRK 601
                 5678899***************************************998....89*******************************************9 PP

                 TTHSS CS
         SLT 104 akkev 108
                      
  EHU01557.1 602 HGMAL 606
                 86655 PP

>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.5   7.8e-08   0.00035     107     192 ..      69     156 ..      31     161 .. 0.71
   2 ?    0.9   5.1     0.076   3.4e+02     122     181 ..     182     239 ..     155     252 .. 0.70
   3 ?    2.9   0.3     0.019        83      77     134 ..     520     588 ..     504     604 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.8e-08
  PhageMin_Tail 107 akaaGlsfeetaaalallaaagikgseAgtalknllsrl..tkeaaealkklGistkdaqgkmksldeiledlsealkkltdaqraaa 192
                     +  G + + + a+  + a++g +++ A  al +l +    +  a+  l+ lG++t+d++gkm++++ i+  + ++l++++    +++
     EHU01557.1  69 SQRTGSTVAGMKALTFAAAQTGSSAEAAQGALESLARFVrnSPGAEGFLNRLGVQTRDVSGKMRDMSAIFTGVGQKLSQMPYYRANQY 156
                    455555555555555566666666666666666655555655599999********************************55544444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.076
  PhageMin_Tail 122 allaa.agikgseAgtalknllsrl...tkeaaealkklGistkdaqgkm.ksldeiledlseal 181
                    + + + +g ++++A+ + +++++++   t+ +  + +k+G       ++   +l ++l++l++++
     EHU01557.1 182 QSMLNrTGFNAEKAAAQSNKFMTSMkglTALMGILRDKVG-------ANLaGGLAGTLDNLRKKI 239
                    55677588*****************333333333333334.......222477777777777765 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.019
  PhageMin_Tail  77 eaaDvlaaaanngatsvedlaealkevgavakaaGlsfee..........taaalallaa.agikgseA 134
                    + + +   ++n++a+s+++ +  ++ + ++a+ +Gl++++          +a  l++l + +g + ++A
     EHU01557.1 520 RSVAITESGGNQFAVSGAGAKGLFQFMDGTARDMGLKGNDvfdpaksaqaAARYLSQLLKaNGGNLEKA 588
                    556667778999**************************9987777776665555555555466666666 PP

>> Transglycosylas  Transglycosylase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.1e-06     0.023       8      47 ..     520     559 ..     516     584 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.1e-06
                      HHHHHHHHSS-TT-TTSSSEBTTTTBEHHHHHHTTCCST. CS
  Transglycosylas   8 daiAqcEsggnwaintgnGyyGglqfsqstWeavggekya 47 
                        +A  Esggn  +++g G+ G +qf   t + +g ++  
       EHU01557.1 520 RSVAITESGGNQFAVSGAGAKGLFQFMDGTARDMGLKGND 559
                      57999*************************9998866532 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.21   9.2e+02      11      24 ..      89     102 ..      86     103 .. 0.91
   2 ?   -0.5   0.0      0.25   1.1e+03      20      33 ..     183     196 ..     182     198 .. 0.83
   3 ?   -2.7   0.0       1.3   5.6e+03      27      38 ..     269     280 ..     267     280 .. 0.94
   4 ?   11.0   0.0   6.6e-05      0.29      20      36 ..     576     592 ..     575     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
       UBA_4  11 TGadeekArqlLea 24 
                 TG++ e A+  Le+
  EHU01557.1  89 TGSSAEAAQGALES 102
                 9********99996 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.25
       UBA_4  20 qlLeannWdLerAi 33 
                 ++L++++++ e A+
  EHU01557.1 183 SMLNRTGFNAEKAA 196
                 68999999999996 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.3
       UBA_4  27 WdLerAislyFd 38 
                 W L +A+   Fd
  EHU01557.1 269 WRLIQAVGEIFD 280
                 9999****9998 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 6.6e-05
       UBA_4  20 qlLeannWdLerAisly 36 
                 qlL+an+++Le A+++y
  EHU01557.1 576 QLLKANGGNLEKALASY 592
                 89************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4877.96
//
Query:       EHU01558.1  [L=50]
Description: hypothetical protein CKS_3682 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 348.81
//
Query:       EHU01559.1  [L=135]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.024   14.0   0.0      0.031   13.6   0.0    1.1  1  Umbravirus_LDM  Umbravirus long distance movement (LDM) famil


Domain annotation for each model (and alignments):
>> Umbravirus_LDM  Umbravirus long distance movement (LDM) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-06     0.031     127     171 ..      45      90 ..      30      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-06
  Umbravirus_LDM 127 RAeidglLppLLdtidGqilgpa.kvllycvravrrelRrkrkPiq 171
                      A+i++lLp++ d++ G    +  ++l  c+ +v r+  +k+ P+ 
      EHU01559.1  45 EAAIETLLPAIADAVAGMSDSDCdAILHPCLSVVSRQNGNKWMPVF 90 
                     499**************999887256677***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1165.06
//
Query:       EHU01560.1  [L=146]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-70  235.8   2.2    1.5e-70  235.7   2.2    1.0  1  DUF3277   Protein of unknown function (DUF3277)


Domain annotation for each model (and alignments):
>> DUF3277  Protein of unknown function (DUF3277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.7   2.2   8.4e-75   1.5e-70       1     144 []       1     144 [.       1     144 [. 1.00

  Alignments for each domain:
  == domain 1  score: 235.7 bits;  conditional E-value: 8.4e-75
     DUF3277   1 latYsFldvsativgpggsfslgsgagvaeeGitvsksedkntmtvgaDGevmhslhagksGtitirllktspvnkkLqalynaqslssaewgsnviti 99 
                 +atYsF+dvsa+++gp+g+++lg+g+++++eGi+v+++e kntmt+gaDGe+mhslhagksGt+ti+llktspvnkkL+ +ynaqs+ssa+wg+nv++i
  EHU01560.1   1 MATYSFMDVSASMTGPTGVIDLGYGSANSDEGIVVAMTEAKNTMTIGADGEGMHSLHAGKSGTVTINLLKTSPVNKKLMIAYNAQSQSSALWGNNVFVI 99 
                 9************************************************************************************************** PP

     DUF3277 100 rntaagdvivarsvafrkePdevyakegnrveWvfdcvkidellG 144
                 rn+a+gd+++ar++af+k Pd+++ak+gn+v+Wvfdc+kidellG
  EHU01560.1 100 RNHASGDIATARGGAFQKIPDWQNAKDGNTVAWVFDCIKIDELLG 144
                 *******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1295.67
//
Query:       EHU01561.1  [L=492]
Description: hypothetical protein CKS_3685 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-181  602.2  19.1   9.1e-181  602.0  19.1    1.0  1  DUF3383   Protein of unknown function (DUF3383)
  ------ inclusion threshold ------
        9.2    6.8  10.3         21    5.7   0.9    3.5  3  DUF4072   Domain of unknown function (DUF4072)


Domain annotation for each model (and alignments):
>> DUF3383  Protein of unknown function (DUF3383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  602.0  19.1    1e-184  9.1e-181       1     478 []       7     490 ..       7     490 .. 0.99

  Alignments for each domain:
  == domain 1  score: 602.0 bits;  conditional E-value: 1e-184
     DUF3383   1 vsrivnvtvsviaaaaqardLnalll..stnvidpkervrsyssaadVaadfGtaspeyqaAqlyFnqspkpkeLliarwaktaaaavlrGgtlsaaq. 96 
                 vsr+vnvtv +++ aa+ar+++ ll+   ++vidp er+r+yss ++Va dfGt++peyqaA+ly++qsp+p +L+i+rw+ +a+a++lrG+ l+++q 
  EHU01561.1   7 VSRVVNVTVDMSPRAASARNFGVLLImgASSVIDPLERLRAYSSVEEVATDFGTDAPEYQAAALYYQQSPRPVDLFIGRWVSEASAGMLRGAILTSEQa 105
                 79**************************556*****************************************************************999 PP

     DUF3383  97 .laqfqavtsGalkitidgtaknvsalnlsaatslndvAsiiqaaltsasatVawdasknrFivssksaGaasavgyatapg....vsaaLgltsasas 190
                  +++f+ vt+Ga+kit++g+a+nv++++ls++t+ln+vA+ i++++t+  atV wda+++rF+v+s +aG++s+vgyatap+    + a+  l++a+++
  EHU01561.1 106 kISNFTGVTDGAMKITVNGKAVNVTGVDLSKETNLNGVAQRIAEKITT--ATVLWDANNSRFTVVSSTAGKNSTVGYATAPDsgtdLTALTMLSQAAGA 202
                 ***********************************************9..9******************************88999999999******* PP

     DUF3383 191 aasagaaaetpaeavaaleavsnnwygltfadaaltddqllavAawieaqnkkylygattqeaaaldatnttdlasklkalaykrtvlqysstdpyaaa 289
                  ++ag++ et  +ava+l+++s+ wygl + +a l++d+++a+Aa+i a+++ +++g+ttq++aa+dat+t+d+as lk+ +y r+++qys+++p aaa
  EHU01561.1 203 SPVAGMDGETAVQAVATLADFSSAWYGLIV-AADLSADDTTAIAAFIGASSTSRIFGLTTQDTAAIDATRTDDIASVLKKGNYGRVFTQYSTSSPWAAA 300
                 ******************************.7******************************************************************* PP

     DUF3383 290 salgraasvnFnannttitlkFkqepgitaevltstqadaldaknyNyYgnynnntailqeGvlsggkfiDeianedWLknaiqkavfnlLltsptkiP 388
                 sa+gra++vnF +nnttitlkFkqepgitae l+++qadal+akn N++++y+n+tailqeGv+++g+f+De +++dWL+n++q++++nlL+ts+tk+P
  EHU01561.1 301 SAFGRAFTVNFGGNNTTITLKFKQEPGITAELLRTSQADALAAKNGNVFVRYDNETAILQEGVMANGDFFDERHGLDWLQNYVQNNLYNLLYTSTTKVP 399
                 *************************************************************************************************** PP

     DUF3383 389 qtdaGealiaaaiedvidqavnnGliapGvwnsagf.aLsagqkltkGYyvyappiasqsqadreaRksvpiqlaykeagaihsvdisvnv 478
                 qtd G ++++a++e++++qavnnGliapGvwn+ ++ +Ls g++ltkGYy +++p+++q+qadre+Rk++piq+a+k+aga+h++d+ ++v
  EHU01561.1 400 QTDPGGTRLLASVEQSMEQAVNNGLIAPGVWNGGAIgQLSPGDTLTKGYYAWIQPMSEQAQADREKRKAPPIQVACKLAGAVHFADVLITV 490
                 ***************************************************************************************9986 PP

>> DUF4072  Domain of unknown function (DUF4072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       0.5   4.5e+03      23      40 ..     144     161 ..     144     164 .. 0.70
   2 ?    5.3   0.5     0.003        27       5      27 ..     181     203 ..     181     207 .. 0.90
   3 ?    5.7   0.9    0.0023        21       7      44 ..     234     271 ..     231     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.5
     DUF4072  23 AsrieridaqAaRlldAd 40 
                 A+ri +  ++A+ l+dA+
  EHU01561.1 144 AQRIAEKITTATVLWDAN 161
                 567777557899999995 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.003
     DUF4072   5 spaPLsaahletLaaLagAsrie 27 
                 ++aP s  +l +L  L++A++ +
  EHU01561.1 181 ATAPDSGTDLTALTMLSQAAGAS 203
                 689****************9976 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0023
     DUF4072   7 aPLsaahletLaaLagAsrieridaqAaRlldAdpaqR 44 
                 a+Lsa++  ++aa  gAs  +ri + ++   +A +a+R
  EHU01561.1 234 ADLSADDTTAIAAFIGASSTSRIFGLTTQDTAAIDATR 271
                 56******************998666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3518.51
//
Query:       EHU01562.1  [L=192]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1362.04
//
Query:       EHU01563.1  [L=129]
Description: putative bacteriophage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1134.83
//
Query:       EHU01564.1  [L=102]
Description: hypothetical protein CKS_3688 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 823.08
//
Query:       EHU01565.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01565.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01565.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01565.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01565.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01565.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01565.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01565.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01565.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01565.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01565.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01565.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01565.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01565.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01565.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01565.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01565.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01565.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2656.73
//
Query:       EHU01566.1  [L=562]
Description: nitrate/nitrite sensor protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-19   70.2   3.4    1.4e-19   70.2   3.4    3.4  4  PilJ             Type IV pili methyl-accepting chemotaxis tra
    1.4e-14   54.4   6.4    1.4e-14   54.4   6.4    3.9  4  HisKA_3          Histidine kinase
    0.00063   20.1   0.0     0.0031   17.9   0.0    2.3  2  HAMP             HAMP domain
     0.0012   19.3   0.3      0.004   17.6   0.1    2.0  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
     0.0016   18.4   0.0      0.004   17.1   0.0    1.7  1  HATPase_c_2      Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.014   15.2   0.1      0.033   14.0   0.1    1.5  1  HATPase_c_3      Histidine kinase-, DNA gyrase B-, and HSP90-
       0.12   12.6   0.4       0.29   11.4   0.4    1.8  1  ESCRT-II         ESCRT-II complex subunit
       0.13   11.9   1.3       0.51   10.0   0.5    2.5  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
       0.18   11.3   0.0       0.26   10.8   0.0    1.2  1  Lipase_2         Lipase (class 2)
       0.83    9.3   5.8       0.48   10.1   2.0    2.3  2  DDE_Tnp_ISL3     Transposase
        1.2    8.4   8.5       0.48    9.7   4.6    2.1  2  CorA             CorA-like Mg2+ transporter protein
          4    7.5   9.4        2.4    8.2   1.5    3.1  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
        4.9    5.0   8.0        1.4    6.8   0.0    2.8  3  Prominin         Prominin


Domain annotation for each model (and alignments):
>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   3.4     1e-22   1.4e-19       2     114 .]      32     135 ..      31     135 .. 0.91
   2 ?   -0.7   0.4         1   1.4e+03      79      90 ..     224     235 ..     200     270 .. 0.48
   3 ?   -0.3   2.8      0.76     1e+03      21      54 ..     384     422 ..     316     436 .. 0.64
   4 ?    0.8   1.5      0.35   4.9e+02      21      59 ..     384     427 ..     372     465 .. 0.69

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 1e-22
        PilJ   2 llaqsegdaaaINvAGslRMqsqRlakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpa...ea 97 
                 +l++s +da+aIN+AGslRMqs+Rla          +da +++  l++++aq+++tl+a  l+++++++ +   +v ++++++++ W  l +++   + 
  EHU01566.1  32 TLSSSLRDAEAINLAGSLRMQSYRLA----------WDARADPHLLTAHLAQYQQTLDAAVLQELDRPWVPR--KVINHYQRLREGWPGLAQHLqanAS 118
                 799***********************..........*********************************888..8*******************66545 PP

        PilJ  98 alaqqddaaylaevadf 114
                  +  q++++y++e+++f
  EHU01566.1 119 DAWRQQMPNYVDEINRF 135
                 55567778888888775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1
        PilJ  79 aqleaveqlWqe 90 
                  +++++eq+ + 
  EHU01566.1 224 CHYQQLEQRVRD 235
                 222222222221 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.76
        PilJ  21 MqsqRlakeallaaaga.....ydaaearaqlretiaqf 54 
                 Mq  R      + a+++     ++ aea +qlre +a+f
  EHU01566.1 384 MQLRRSLSASDQSAQAIiadfdRELAEAYRQLRELLATF 422
                 333333322222222223333444444444444444444 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.35
        PilJ  21 MqsqRlakeallaaaga.....ydaaearaqlretiaqfdrtla 59 
                 Mq  R      + a+++     ++ aea +qlre +a+f+ t++
  EHU01566.1 384 MQLRRSLSASDQSAQAIiadfdRELAEAYRQLRELLATFRLTIE 427
                 55555553333444444555566777777777777777776665 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.89   1.2e+03      19      53 ..      48      82 ..      47      86 .. 0.86
   2 ?    5.4   0.5     0.019        26      13      51 ..     211     249 ..     210     264 .. 0.84
   3 !   54.4   6.4   9.9e-18   1.4e-14       1      64 [.     360     423 ..     360     427 .. 0.97
   4 ?   -2.7   0.2       6.4   8.8e+03      59      59 ..     466     466 ..     432     486 .. 0.55

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.89
                HHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHH CS
     HisKA_3 19 aiklqlelakrllekdpekaaeqlreieelareal 53
                ++++q+  ++  +++dp  + ++l++ +++++ a+
  EHU01566.1 48 SLRMQSYRLAWDARADPHLLTAHLAQYQQTLDAAV 82
                57889999999999999999999999999998875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH CS
     HisKA_3  13 vgqsLsaiklqlelakrllekdpekaaeqlreieelare 51 
                 ++q++s++++ql++  ++le++  +  + l++++++++ 
  EHU01566.1 211 LSQTFSSMAAQLQCHYQQLEQRVRDKTRDLTQANHTLSL 249
                 89*****************98888777788888877765 PP

  == domain 3  score: 54.4 bits;  conditional E-value: 9.9e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLr 64 
                 ERa iARELHDs++qsL+++++ql  ++r+l ++++ a++ +++  + + ea++++R+ll+++r
  EHU01566.1 360 ERATIARELHDSLAQSLTYLRIQLMQLRRSLSASDQSAQAIIADFDRELAEAYRQLRELLATFR 423
                 9*************************************************************99 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 6.4
                 H CS
     HisKA_3  59 l 59 
                  
  EHU01566.1 466 Q 466
                 2 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.2e-06    0.0031       3      52 ..     173     223 ..     171     223 .. 0.92
   2 ?   -2.6   0.1       5.6   7.7e+03      38      49 ..     406     417 ..     406     420 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.2e-06
                 HHTTHHHHHHHHHHHHHHTTTBTSST.CCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarriaaGdldtr.lpvsgrDEiGeLarafNaMldrLr 52 
                   ++++PL+ L+ra r + +G++  + l v  ++E+  L ++f  M+ +L+
  EHU01566.1 173 RQQVVKPLNALVRASRYVESGNFAFPpLHVQQQNELKVLSQTFSSMAAQLQ 223
                 5689**********************7777*****************9997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.6
                 HHHHHHHHHHHH CS
        HAMP  38 GeLarafNaMld 49 
                 +eLa+a++++++
  EHU01566.1 406 RELAEAYRQLRE 417
                 589999999987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.9e-06     0.004       5      50 ..     468     513 ..     465     556 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSST CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGip 50 
                 ++ qi +++v Na+++ ++a  i+v  + ++ ++ +++++D+G G+ 
  EHU01566.1 468 HVLQIAREAVLNAIRH-ANARLITVDYQITDtGEHSLTITDDGTGMI 513
                 6789************.8899999988874469************95 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.9e-06     0.004      24      83 ..     461     518 ..     405     523 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.9e-06
  HATPase_c_2  24 lseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetl 83 
                  l++++  ++   + Ea+ Na++ha+ +    +v ++++ d+++  ++++D+G g   +e+ 
   EHU01566.1 461 LDARQQVHVLQIAREAVLNAIRHANARLI--TVDYQIT-DTGEHSLTITDDGTGmISTEEP 518
                  44455557888899***********9766..6666654.4455899*******96665544 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.4e-05     0.033       9      46 ..     475     513 ..     472     517 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
  HATPase_c_3   9 elvdNsld.AdaenvkievnknrgktgeivieDdGkGms 46 
                  e v N++  A+a+ +++ ++  ++ + +++i+DdG+Gm 
   EHU01566.1 475 EAVLNAIRhANARLITVDYQITDTGEHSLTITDDGTGMI 513
                  668899877***********99999*************6 PP

>> ESCRT-II  ESCRT-II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00021      0.29       2      86 ..     195     289 ..     194     358 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
    ESCRT-II   2 ysFpPfFTlqpnlttrkkqlekWsslilaycrhhrifklslsea.....eeeeeeselFknkki..nRrlsledirevleelvkkgraewv.....d 86 
                 + FpP+  +q+n+    +q    ss+  +   h+++ +  ++++     +++++ s l++ ++i  +R+l+++ ++ vl+ +v k++++ +     +
  EHU01566.1 195 FAFPPLHVQQQNELKVLSQT--FSSMAAQLQCHYQQLEQRVRDKtrdltQANHTLSLLYESSQIltSRSLQPALFDDVLNRIVGKENIAFIqlqgeQ 289
                 78*******99998888774..344444444444444444443344444566667889999999889*******************99988554440 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   0.00037      0.51       3      31 ..     398     426 ..     396     430 .. 0.86
   2 ?   -2.2   0.0       2.4   3.4e+03      28      42 ..     458     472 ..     447     475 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00037
  Nbl1_Borealin_N   3 ealLenfdlEveeRirrlraelelllktl 31 
                      +a++++fd E+ e  r+lr+ l++   t+
       EHU01566.1 398 QAIIADFDRELAEAYRQLRELLATFRLTI 426
                      89******************998766555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
  Nbl1_Borealin_N  28 lktlrnrfelellri 42 
                      l++l++r+++ +l+i
       EHU01566.1 458 LQQLDARQQVHVLQI 472
                      799999999999998 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.26      54     155 ..     125     231 ..     111     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
    Lipase_2  54 kCeyvkqlRklilaVlkyTgakkvdivahs.mGvpiaRkailGgkcvdtnedLgepltskvdtfvsvaganaGlllcasads....tlepiC.nkkngl 146
                   +yv ++ +++la + y +  k+ +va s + + ia  a    +   t++++++pl++ v++   v++ n  + + + +++    +l ++  ++  +l
  EHU01566.1 125 MPNYVDEINRFVLALQRYAEL-KMRVVAISsLTGVIAIVALALMTIRFTRQQVVKPLNALVRASRYVESGNFAFPPLHVQQQnelkVLSQTFsSMAAQL 222
                 4689*****************.******97345567777777778889***********************9987665555456774444444999999 PP

    Lipase_2 147 nCeSkfLqd 155
                 +C+ + L++
  EHU01566.1 223 QCHYQQLEQ 231
                 995555544 PP

>> DDE_Tnp_ISL3  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.52   7.2e+02     109     154 ..     211     256 ..     160     268 .. 0.73
   2 ?   10.1   2.0   0.00035      0.48      97     185 ..     360     449 ..     348     488 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.52
  DDE_Tnp_ISL3 109 krkklkrsrrlllknpenlteeqkqrldelleaspelekaYelkee 154
                     +++  +   l  ++++l+++ + + ++l++a+ +l+  Ye  + 
    EHU01566.1 211 LSQTFSSMAAQLQCHYQQLEQRVRDKTRDLTQANHTLSLLYESSQI 256
                   4455566666666677777777777777788888888877776665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00035
  DDE_Tnp_ISL3  97 vRrreqkelreekrkklkrsrrlllknpenlteeqkqrldelleaspelekaYelkeelrevfrkk.dkeearkalkewiekaersglke 185
                    R ++++el+++ +++l+  r  l++ + +l+ + +++   +++ ++el++aY+   el + fr + +k++ ++al+ +i+ ++++ ++ 
    EHU01566.1 360 ERATIARELHDSLAQSLTYLRIQLMQLRRSLSASDQSAQAIIADFDRELAEAYRQLRELLATFRLTiEKADLEAALHVMIAPLQSQTVAD 449
                   4899999**99**********************9999967799***********999999999988889999999999999888666555 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.61   8.4e+02      60      98 ..     232     274 ..     202     283 .. 0.53
   2 ?    9.7   4.6   0.00035      0.48     134     209 ..     355     430 ..     347     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.61
        CorA  60 dkseeeeeev....plsillgdnflitvrreplealdevikrl 98 
                 + +++ ++ +    +ls+l     ++t r+ +  ++d+v +r+
  EHU01566.1 232 RVRDKTRDLTqanhTLSLLYESSQILTSRSLQPALFDDVLNRI 274
                 2222222222333355555555555555555555555555555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00035
        CorA 134 ldeledel..edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemle 209
                 +  +e++    ++ +++++++l++lr +l +lrr+l+++ +  ++++a ++d +l ++  ++lr+ll  ++  +e+++
  EHU01566.1 355 MLLIEERAtiARELHDSLAQSLTYLRIQLMQLRRSLSASDQSAQAIIA-DFDRELAEAY-RQLRELLATFRLTIEKAD 430
                 556777777788999*********************************.7777766654.678888877777666665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.8     0.099   1.4e+02      23      75 ..     209     243 ..     200     274 .. 0.53
   2 ?    8.2   1.5    0.0018       2.4      31     125 ..     374     471 ..     363     484 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.099
  Baculo_PEP_C  23 nairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtda 75 
                   + +    ++++aql+   +++e+++ + + dl++                  a
    EHU01566.1 209 KVLSQTFSSMAAQLQCHYQQLEQRVRDKTRDLTQ------------------A 243
                   2222223333333443444444333333333333..................3 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlr.neLt.nlnsiltnLlss.vtNinstLnnllqalnnldlgals 124
                   q l+ l  +l ++ ++L+a +++ ++ +a++d++l+++  +L + l+++  t++  +L+ +l   ++ L+s+ v+ i  t +  lq l++ ++  + 
    EHU01566.1 374 QSLTYLRIQLMQLRRSLSASDQSAQAIIADFDRELAEAYRQLRELLATFRLTIEkADLEaALHVMIAPLQSQtVADIRLTCQPGLQQLDARQQVHVL 470
                   455667778888999999999999999999999***********99999966641567634777788888754777777777777776666655555 PP

  Baculo_PEP_C 125 q 125
                   q
    EHU01566.1 471 Q 471
                   5 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.001       1.4     361     438 ..      92     167 ..      70     182 .. 0.87
   2 ?    1.5   0.4      0.04        55     251     289 ..     208     246 ..     199     290 .. 0.67
   3 ?   -1.0   1.0      0.22   3.1e+02     221     284 ..     363     427 ..     342     498 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.001
    Prominin 361 vpdlkkalakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwliglivcsllllivvililgLl 438
                  +++++  ++ re    la+++  +a da+ +++ n  +++++f   +++y + +    ++++s+l+ ++ i+ l+L+
  EHU01566.1  92 PRKVINHYQRLREGWPGLAQHLQANASDAWRQQMPNYVDEINRFVLALQRYAELKM--RVVAISSLTGVIAIVALALM 167
                 45888999999999999**********************************99875..56778899999999999997 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.04
    Prominin 251 akeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn 289
                  k + ++ +++  +L+   +qL++ +r+  rdl+qa + 
  EHU01566.1 208 LKVLSQTFSSMAAQLQCHYQQLEQRVRDKTRDLTQANHT 246
                 333444556666777777777777777777777776544 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.22
    Prominin 221 hlgldladtlesnvlpaLaelerllenlkeakeqLeqv.nklekeLrksgsqLrdglrgvkrdln 284
                  +  +l+d l ++++    +l +l ++l+++ ++ +++  ++  eL +  +qLr+ l   +  ++
  EHU01566.1 363 TIARELHDSLAQSLTYLRIQLMQLRRSLSASDQSAQAIiADFDRELAEAYRQLRELLATFRLTIE 427
                 33444444444443333334444444444444433332133444444444444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1052  (0.0586759); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.61u 0.32s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3750.29
//
Query:       EHU01567.1  [L=90]
Description: hypothetical protein CKS_3692 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-18   65.7   0.0    3.9e-18   65.2   0.0    1.3  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   2.1e-22   3.9e-18       1      56 []      34      90 .]      34      90 .] 0.99

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 2.1e-22
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelYK 56
                lq+ig++sv++v gs++d++++ls++A+ +GA+++r++ +++ ++++ +++tAe+Y+
  EHU01567.1 34 LQRIGSVSVTNVNGSLDDVTRQLSQEAKSEGARHFRVIGVDNpGDSSLWTGTAEIYR 90
                89******************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 679.32
//
Query:       EHU01568.1  [L=490]
Description: L-asparagine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-125  418.3  41.8   4.4e-125  418.0  41.8    1.0  1  AA_permease      Amino acid permease
    1.1e-42  146.4  43.7    1.4e-42  146.1  43.7    1.0  1  AA_permease_2    Amino acid permease
  ------ inclusion threshold ------
       0.22   11.2   3.3        1.4    8.7   0.1    3.4  2  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.0  41.8  7.3e-129  4.4e-125       1     476 [.      34     474 ..      34     477 .. 0.97

  Alignments for each domain:
  == domain 1  score: 418.0 bits;  conditional E-value: 7.3e-129
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++ia+gg+iGtglf+g g  l++aGp+ a ++yl++g+++f++ ++lge++ + p+sg+f  ya++f+g+++++v G++y+++w+++ ++++ta++
   EHU01568.1  34 HVQMIAIGGAIGTGLFLGAGARLQAAGPALA-VIYLVCGIFSFFILRALGELVLHRPSSGSFVSYAREFMGEKASYVAGWMYFVNWAMTGIVDITAVA 130
                  9***************************665.99**************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga..gfrflgdngsifknnlppgfakee 194
                   ++++w+ + d+p +wv+++  l+++ ++n++gvk+++e+ef++al+k++ai++f++vg+++l +gkp +g+  gf+ ++dng+     +p+g     
   EHU01568.1 131 LYMHYWGAFGDVP-QWVFALGALAIVGTMNMIGVKWFAEMEFWFALVKVLAIVIFLVVGVVFLGSGKPLDGNatGFHLVTDNGG----LFPHG----- 218
                  *************.**********************************************************************....*****..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapli 292
                     ++  +++ + vvfaf++ielv+++agE+kdPe ++Pkai++v++ri++fYv+s++l++ll+p+n+ +  +      spfv+f++++gv+++++++
   EHU01568.1 219 ---LLPALVLVQGVVFAFASIELVGTAAGECKDPETMLPKAINSVIWRIGLFYVGSVVLLVLLLPWNAYQAGQ------SPFVTFFSKLGVPYIGSIM 307
                  ...*******************************************************************999......9****************** PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  n+v+l+aalss+ns+lys+ R+l s+++ g aPk+++k+s ++vP+++il++ ++++++++l+++ ++  +vf+++l+++ l +++ w++i l++lr+
   EHU01568.1 308 NIVVLSAALSSLNSGLYSTGRILRSMSMGGSAPKFMSKMSSQQVPYAGILVTVCVYVVGVILNYYVPS--QVFEIVLNVASLGIISSWGFIVLCQLRL 403
                  ********************************************************************..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpq 476
                  Rka  +++ ++++++fk++++p++++l+l++l ++l+++a+ ++                +++ +++l+ ++lv +++ v++++ +
   EHU01568.1 404 RKA--IKEGKADDVSFKLPGAPFTSWLTLLFLFSVLVLMAFDYPNG-------------TYTIASIPLIAVVLVLGWFGVRKRVNE 474
                  ***..555566*******************************9988.............788888888888888888888877665 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1  43.7   2.3e-46   1.4e-42       7     420 ..      36     459 ..      31     465 .. 0.85

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 2.3e-46
  AA_permease_2   7 falvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                     +++ig +ig+g f     ++ ++gpal++++++ ++i+s+  l ++ El  + p+sg  ++y+++++g+k+ ++++w++++ ++ +  + ++++a
     EHU01568.1  36 QMIAIGGAIGTGLFLGAgaRLQAAGPALAVIYLV-CGIFSFFILRALGELVLHRPSSGSFVSYAREFMGEKASYVAGWMYFVNWAMTGIVDITAVA 130
                    5799**********998888888****9988877.555557788899***877*********************************9955555566 PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdtffpngwpg 189
                     y+ + +g ++   ++++ ++a + l++v ++n +g+k+ a + ++ +++k+ l ++i++++g+++++ g   +        +t+++  fp+g   
     EHU01568.1 131 LYMHY-WGAFG---DVPQWVFALGALAIVGTMNMIGVKWFAEMEFWFALVKV-LAIVIFLVVGVVFLGSGKPLDGnatgfhlVTDNGGLFPHGLLP 221
                    66665.77653...4577889999****************************.6999999999999866555544666664444444488888888 PP

  AA_permease_2 190 vllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilials 283
                     l+   +v+++f+ +e +   + e  ++++ +pkai++++  ++++y++  ++++  +p++  +  ++   ++  ff ++g +   +i++i++  +
     EHU01568.1 222 ALVLVQGVVFAFASIELVGTAAGEckDPETMLPKAINSVIWRIGLFYVGSVVLLVLLLPWNAYQAGQS---PFVTFFSKLGVPYIGSIMNIVVLSA 314
                    9999999*****************6566689*******************************997443...699********************** PP

  AA_permease_2 284 llgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl 379
                    +l ++n+ ++++ r+l++++  g  P+f++k++ ++ p+++i +t+ v ++ ++l ++++s  + ++l+v+slg+i+s+++++++ l lrk  ++ 
     EHU01568.1 315 ALSSLNSGLYSTGRILRSMSMGGSAPKFMSKMSSQQVPYAGILVTVCVYVVGVILNYYVPSQVFEIVLNVASLGIISSWGFIVLCQLRLRKAIKEG 410
                    *************************************************99999999999********************************8877 PP

  AA_permease_2 380 kr.......pgkilvaiigalfllfllvalffppkgpa.tqssliytii 420
                    k        pg++ ++++ +lfl+ +lv+++f   + + t  s+ +  +
     EHU01568.1 411 KAddvsfklPGAPFTSWLTLLFLFSVLVLMAFDYPNGTyTIASIPLIAV 459
                    6678887778889999999999999988888764444325555544422 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.9       0.1   6.3e+02      10      46 ..     127     162 ..     120     170 .. 0.79
   2 ?    8.7   0.1   0.00023       1.4      17      52 ..     334     372 ..     325     376 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.1
  Phage_holin_2_4  10 aaagnkatggGavvsfaGflasselialvGlavAliG 46 
                      +a++    + Ga + +  ++ +  ++a+vG +  +iG
       EHU01568.1 127 TAVALYMHYWGAFGDVPQWVFALGALAIVGTM-NMIG 162
                      5666677789999*****************74.5555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00023
  Phage_holin_2_4  17 tggGavvsfaGflassel..ia.lvGlavAliGlLvnWy 52 
                      ++gG+   f+ +++s+++  ++ lv ++v ++G+++n+y
       EHU01568.1 334 SMGGSAPKFMSKMSSQQVpyAGiLVTVCVYVVGVILNYY 372
                      7899999******999853344367899999*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 3788.72
//
Query:       EHU01569.1  [L=192]
Description: GDP-mannose pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.9   0.0      2e-09   37.5   0.0    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.1e-13     2e-09       3     107 ..      45     155 ..      43     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.1e-13
                 EEEEEEEEEETTSE.EEEEEES......SSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE CS
       NUDIX   3 rravgvvllnekge.vLlvrrs......kkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleev 92 
                 + ++ ++l+n+++  v+l+r++      +   +g   e ++G ++ +++pe++ r E+ EEtG+ + ++e l        y+ p g  +e++++f++e 
  EHU01569.1  45 GNGATILLYNREKNsVVLTRQFrvatyvNGNEDGmlIEACAGLLD-DDSPEDCIRKEAIEETGYAVGEVEKLY-----SVYMSPGG-VTELIHFFAAEY 136
                 678899999999778*****999976655555556447*******.99***************9778887777.....34667777.79999****999 PP

                 CSGCSST....STTTEEEE CS
       NUDIX  93 egelepn....denevsev 107
                 ++ l+ n     e+e  +v
  EHU01569.1 137 HESLRENagggVEDEAIDV 155
                 9999999555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1500.73
//
Query:       EHU01570.1  [L=298]
Description: D-allose kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-48  164.5   0.0    4.1e-48  164.4   0.0    1.0  1  ROK          ROK family
    6.4e-05   22.1   1.6     0.0033   16.5   1.6    2.6  2  Glucokinase  Glucokinase
  ------ inclusion threshold ------
      0.074   12.5   0.0       0.17   11.3   0.0    1.6  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.0   6.8e-52   4.1e-48       2     291 ..       6     290 ..       5     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 6.8e-52
                 EEEEE-SSEEEEEEEETTS-EEEEEEE.EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHHHTS CS
         ROK   2 igidiGgtkialalvdeegeilarekv.etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitw.enfdlvekleerlnv 98 
                 +g+diGgt ++l l+++       +k+   +  +  ++l++  + ++d ++   +++ +v +g+pG++s+++++++s p i++ + ++++++l++rl+v
  EHU01570.1   6 LGMDIGGTSTRLQLMEDGQHWCGFRKIaTASWAQQTDALHALGDVIIDTLAS--QAISGVMLGLPGILSRDRQQVISLPFIQAlDGQPVAAQLSKRLGV 102
                 699*************888888888884344566777885555555555544..4588***************************************** PP

                 -EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTCCGTTS-H CS
         ROK  99 pvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqqkgeklea 197
                 pv +++Dvn + l ++ ++ ++  +n + ++ gtG+G   +++g++++G++G agelGHi+l  ++  c CGn+gC Etl+sg  l ++a +++ +  +
  EHU01570.1 103 PVAMDKDVNHLML-WDLLQLDALPDNAVGLYPGTGLGNSLWLEGRFYHGHHGGAGELGHIPLPGNDLPCPCGNRGCAETLISGHWLSQWAATHQPDTAL 200
                 **********766.9999********************************************************************************* PP

                 HHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHHH CS
         ROK 198 keiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgdkagllGaaaLa 291
                 ++++++ +       + ++ ++++la++ia  +n++dp+  +lgGgv ++ ++  +++++ +++ l+    +  ++iv +++ d  g +Ga + a
  EHU01570.1 201 SQLFTRHRD-----HPDLQAFVQRLAHLIASEMNILDPEYLILGGGVLAMAGFPlAQLQHHIQRSLRPPVTRHGLRIVFSHATDYTGCRGACLAA 290
                 *****9999.....999*************************************9************************************8766 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.6   5.4e-07    0.0033       3     164 ..       8     164 ..       6     168 .. 0.65
   2 ?   -3.2   0.0      0.52   3.1e+03      32      65 ..     207     247 ..     190     256 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.4e-07
  Glucokinase   3 gDiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpvegdeveltNlpWv..iseeelakelgle.avel 97 
                   DiGGT +rl+l+e+ ++    ++i++ + a+ ++  +al +++ +   + ++++ ++l+  g ++ d+ ++  lp    ++ + +a++l+ +  v  
   EHU01570.1   8 MDIGGTSTRLQLMEDGQHWCGFRKIATASWAQQTDALHALGDVIID-TLASQAISGVMLGLPGILSRDRQQVISLPFIqaLDGQPVAAQLSKRlGVP- 103
                  6*************99999555555555555555555555555553.667777788***************99999851144444444443332222. PP

  Glucokinase  98 iNDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipek..errvvlasEGGhvdfa 164
                       a+   +++l   dl+ql +   +     + l +GTGLG +l+++ +  ++++  a+E Gh+ ++
   EHU01570.1 104 ----VAMDKDVNHLMLWDLLQLDALPDN----AVGLYPGTGLGNSLWLEGRfyHGHHGGAGELGHIPLP 164
                  ....455566666666677777665544....3335599999999998765225555677777777665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.52
  Glucokinase  32 sadyasleealqaflaea..eaevkrpks.....avlAvAg 65 
                   +d+++l++ +q+  + +  e ++ +p++     +vlA+Ag
   EHU01570.1 207 HRDHPDLQAFVQRLAHLIasEMNILDPEYlilggGVLAMAG 247
                  45666666666655443322444444444444445555555 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.9e-05      0.17       1      48 [.       6      51 ..       6      86 .. 0.80
   2 ?   -1.8   0.0      0.29   1.7e+03     219     232 ..     234     248 ..     213     290 .. 0.43

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHH CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleeal 48
                 +G D+G+T+t+  lm++ + + g  +  +a+    ++++a   l +++
   EHU01570.1  6 LGMDIGGTSTRLQLMEDGQHWCGFRKIATASWA--QQTDALHALGDVI 51
                 7******************99886666665555..3345565555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.29
                  ..EEEESGGGG-HHH CS
  BcrAD_BadFG 219 e.vtltGGvakneaa 232
                  e ++l GGv   +++
   EHU01570.1 234 EyLILGGGVLAMAGF 248
                  357777777655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2359.31
//
Query:       EHU01571.1  [L=230]
Description: D-allulose-6-phosphate 3-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-61  206.7   0.2    2.6e-61  206.5   0.2    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.5   0.2   1.4e-65   2.6e-61       2     195 ..       5     198 ..       4     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 206.5 bits;  conditional E-value: 1.4e-65
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGGE-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-T.THH CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkltelpldvHLmveevdrivpefaeagasiisvHaEale.hlk 95 
                     i+pSl+  + ++ +++++ ++ + ad+lHvD+mDgh+v+N+t+ p  +e++r++t + +dvHLmve++  ++++ a+aga++i+ HaE+++    
      EHU01571.1   5 ISPSLMCMNLMEIKQQLAVLN-TRADFLHVDIMDGHYVKNITLSPFFIEQIRPHTPVAIDVHLMVEQPTDFIEAVAKAGADYICPHAETINrDAF 98 
                     99*************997665.66****************************************************************7751689 PP

                     HHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--E CS
  Ribul_P_3_epim  96 rtiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadv 190
                     r+i+ i+++G+k+g+vlnpatp++++++ ++ l+ +++m+v+Pg  GQ Fipe+++ki+++++l +++++d  ie+DG  ++ + + + eagadv
      EHU01571.1  99 RVINLIRSLGKKPGVVLNPATPVSFIHHYIHLLEKITVMTVDPGYAGQPFIPEMVQKIQQLKALKQAQGYDFLIEIDGSCNQRTYRTLLEAGADV 193
                     *********************************************************************************************** PP

                     EEESH CS
  Ribul_P_3_epim 191 lVags 195
                     l++g+
      EHU01571.1 194 LIVGT 198
                     *9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1718.61
//
Query:       EHU01572.1  [L=350]
Description: permease component of an ABC superfamily ribose/xylose/arabinose/galactoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-26   93.1  46.9    2.2e-26   92.6  46.9    1.2  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
      0.023   14.4   0.3      0.023   14.4   0.3    2.5  3  DUF4516       Domain of unknown function (DUF4516)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6  46.9   2.5e-30   2.2e-26       4     268 .]      43     316 ..      40     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 2.5e-30
  BPD_transp_2   4 nlltlaailaiaAlGlalvfgiaGvinlghggfmalG.ayvaalllalllsl.........lllallvallvgaavglllgllvlrlkvdeliitll 90 
                   +++ +   l+++ l++ + + ++G++nl++ + + l   ++a++ll++++           llla+l a+l++a++gl++g++v+r + +++++tl+
    EHU01572.1  43 SMAFQLPELGLLTLAMFIAI-LSGGLNLAIITTANLTsLFIAWVLLNRVPDGagtaqqlvwLLLAVLGAMLIAALIGLITGVMVTRIGAHPILVTLA 138
                   56778889************.*********9999888799999999999988********************************************* PP

  BPD_transp_2  91 llsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisg 187
                   +++ + g+      ++t+g + +s+++++++  ga    ++    +l+ll+++ + l+l +tr G  +++ g+n +a  ++Gin+ r+ +l++++s+
    EHU01572.1 139 TMITINGIGI----WLTKGAA-VSGMPPVVRALGADTLLGVPLPLWLFLLAAAMLALFLGKTRAGKCIYMGGSNINATWFSGINTHRMVMLVYILSS 230
                   **********....7777766.55666666666666555555556778888888999**************************************** PP

  BPD_transp_2 188 alAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +l  laG+++ ++++s+ +  g  + + +++a +lGg+      g++ g+v++ +++ ++++ + +l+ i++ ++ ++ ga+li+vl
    EHU01572.1 231 LLCVLAGLVMMARFNSARMGYGDAYLLLTVLAIILGGTdpnggfGRVTGVVLALIALQILST-GFNLMNISPHVSLAMWGAVLIVVL 316
                   **************************************************************.**********************97 PP

>> DUF4516  Domain of unknown function (DUF4516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       1.4   1.2e+04      13      22 ..      36      45 ..      35      45 .. 0.72
   2 ?   14.4   0.3   2.6e-06     0.023       3      24 ..     172     193 ..     172     195 .. 0.96
   3 ?   -3.4   1.9      0.96   8.6e+03      16      24 ..     229     237 ..     223     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.4
     DUF4516 13 fvtasllsMl 22
                f  a +lsM+
  EHU01572.1 36 FTDATFLSMA 45
                5567899995 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.6e-06
     DUF4516   3 aGvswgeYlkfvtasllsMlaG 24 
                 +Gv+++ +l++++a++l++++G
  EHU01572.1 172 LGVPLPLWLFLLAAAMLALFLG 193
                 59*******************9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.96
     DUF4516  16 asllsMlaG 24 
                 +sll+ laG
  EHU01572.1 229 SSLLCVLAG 237
                 799****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2923.49
//
Query:       EHU01573.1  [L=329]
Description: permease component of an ABC superfamily ribose/xylose/arabinose/galactoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-35  123.1  41.7    1.8e-35  122.4  41.7    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
        3.2    7.6   4.8         36    4.3   0.2    2.7  2  ECSCR         Endothelial cell-specific chemotaxis regulator
        4.5    7.2  19.0        0.2   11.5   2.9    4.4  4  LapA_dom      Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4  41.7     3e-39   1.8e-35       2     267 ..      40     312 ..      39     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 3e-39
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl.lllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   +l l+ + a+ +i+AlGl +v  ++G+i+++ ++++ +  y++a l + ++    +l++++a+++g ++g+++++l+++l+v ++iit+ + s+l+g
    EHU01573.1  40 LLDLAESYAVTGIFALGLFVVL-VTGGIDISFAAVASVVQYLIASLFVHYQFAnAPLSIALAIACGTLFGVINAWLITWLRVVSIIITISMQSLLFG 135
                   677889999*************.****************988888887777666******************************************* PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsaviv......llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisga 188
                   l+     + t+g    + ++++++   +l +  +++ +      l++ll++++  ++l++t +Gr+l+avg++ e ar  Gi+v+ + l+++   ga
    EHU01573.1 136 LLM----WVTGGRSLYQLPDWWITLRNVLPFEWQGQAFqlglplLILLLIAALTAVILNKTHLGRQLYAVGGDAESARRIGIRVGLISLFAYGWLGA 228
                   ***....888999999999999999888887777766679***999999999999****************************************** PP

  BPD_transp_2 189 lAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   +A++ G++++ + g + pn+ vg +++++aa vlGga      g++ gt++G ++i+v+k+ +l+l+g+++ + ++++g +++++
    EHU01573.1 229 MAAIGGLVQVYRMGEVVPNALVGGELDVLAATVLGGAslmggkGTVSGTLMGVFLIAVLKN-GLNLIGVSNYFMNIVVGTVIMAA 312
                   *************************************************************.********************987 PP

>> ECSCR  Endothelial cell-specific chemotaxis regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.7    0.0069        41      23      49 ..     105     134 ..      89     137 .. 0.70
   2 ?    4.3   0.2     0.006        36      25      55 ..     294     324 ..     285     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0069
       ECSCR  23 aafgvisfivi..l.vvvviilvsvvslrf 49 
                 + fgvi   +i  l vv +ii +s+ sl f
  EHU01573.1 105 TLFGVINAWLItwLrVVSIIITISMQSLLF 134
                 469999855442233677788899999987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.006
       ECSCR  25 fgvisfivilvvvviilvsvvslrfkcrknk 55 
                 +gv  + + +vv  +i+ ++    fk rk+ 
  EHU01573.1 294 IGVSNYFMNIVVGTVIMAAIAVTHFKKRKET 324
                 68999999999999************99975 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.7      0.54   3.2e+03      23      38 ..      49      64 ..      40      69 .. 0.77
   2 ?   11.5   2.9   3.4e-05       0.2       8      43 ..      86     121 ..      77     133 .. 0.76
   3 ?    5.3   0.5    0.0029        17      13      37 ..     164     189 ..     158     198 .. 0.82
   4 ?   -1.7   0.0      0.45   2.7e+03      28      48 ..     304     323 ..     302     324 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.54
    LapA_dom 23 llvafgiGallgwlls 38
                + + f++G++++++++
  EHU01573.1 49 VTGIFALGLFVVLVTG 64
                5677888888887766 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.4e-05
    LapA_dom   8 vnflfaqvelpLsllllvafgiGallgwllslwsyl 43 
                 v++ fa + l+++l ++   ++G++ +wl+++++++
  EHU01573.1  86 VHYQFANAPLSIALAIACGTLFGVINAWLITWLRVV 121
                 455566666666666666678***********9876 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0029
    LapA_dom  13 aqv.elpLsllllvafgiGallgwll 37 
                 +q+  + L+l ll+ ++i al +++l
  EHU01573.1 164 WQGqAFQLGLPLLILLLIAALTAVIL 189
                 66668899999999999999998876 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.45
    LapA_dom  28 giGallgwllslwsylrlrre 48 
                 ++G +++  +++ + +++r+e
  EHU01573.1 304 VVGTVIMAAIAV-THFKKRKE 323
                 567777777777.68888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2594.51
//
Query:       EHU01574.1  [L=501]
Description: ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-50  169.7   0.0    1.5e-25   90.3   0.0    2.3  2  ABC_tran     ABC transporter
      8e-06   25.9   2.3      0.017   14.9   0.0    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0021   17.6   0.0       0.57    9.6   0.0    2.7  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0069   16.3   0.7      0.018   15.0   0.1    2.0  3  RsgA_GTPase  RsgA GTPase
     0.0097   15.6   0.1      0.048   13.4   0.1    2.0  2  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.9        2.9    8.3   0.0    3.1  4  AAA          ATPase family associated with various cellular a
      0.012   15.6   0.2       0.16   11.9   0.0    2.6  3  Rad17        Rad17 P-loop domain
      0.013   15.1   0.5        0.5    9.9   0.0    3.1  3  AAA_25       AAA domain
      0.016   15.7   0.2        1.2    9.7   0.1    2.9  3  AAA_18       AAA domain
      0.019   14.9   0.2         14    5.5   0.0    3.0  3  ATPase_2     ATPase domain predominantly from Archaea
      0.031   14.0   0.0      0.048   13.4   0.0    1.3  1  AAA_15       AAA ATPase domain
      0.067   12.9   0.3        2.2    7.9   0.0    2.4  2  AAA_30       AAA domain
       0.12   12.3   0.3        9.3    6.3   0.1    2.7  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
        0.2   10.9   0.4       0.95    8.7   0.0    2.1  2  Zeta_toxin   Zeta toxin
       0.23   12.0   0.1       0.54   10.7   0.1    1.6  1  AAA_23       AAA domain
        5.6    7.2   7.0         47    4.3   0.4    3.6  4  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   1.3e-28   1.5e-25       1     137 []      25     177 ..      25     177 .. 0.86
   2 !   77.3   0.0   1.4e-24   1.6e-21       2     136 ..     277     431 ..     276     432 .. 0.88

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 1.3e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEE.EEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteG.eilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esd 82 
                 l+++sl+l +ge++ + G nG+GKStL+k+++g + p+ G ei+l + d      + +  +  i+v+ q+ +lfp+l+v+en              +  
  EHU01574.1  25 LSDISLTLLAGEVHCLAGTNGCGKSTLIKVISGVHAPDRGsEIRLGDGDCLPrlSTQQARDFGIQVIYQDLSLFPNLSVAENiafehnlrglfgwhQ-- 121
                 689**********************************99845888855655557777888889**********************999999999641.. PP

                 TC.....HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee.....iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++     + +++++l+ +   d+ v    ++LS  q+q va++ral+ +++l+++DEpta
  EHU01574.1 122 RKtlvdsARRIVEELQFDLNLDESV----AHLSIAQRQQVAICRALVADARLVIMDEPTA 177
                 3345444777777777777666666....*****************************97 PP

  == domain 2  score: 77.3 bits;  conditional E-value: 1.4e-24
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 ++v++ l+ege++++ G  G+G + L+  l g+++p+ G+i+ld+k+++    +   ++ ig+++++     l ++ +v++n                 
  EHU01574.1 277 HDVNFRLYEGEVLGLCGLLGSGRTELALSLFGMTRPDRGRIWLDSKPVRFrSHEDAIKAGIGYVSEDrltLGLIQQQSVADNmvlpilnqlqnrfhlid 375
                 79***********************************************9677788999********988888888889999*******9999999986 PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    +++ i +++++lg    + +      s+LSgG +q+++la+ +l++p+ll+lD pt
  EHU01574.1 376 eyRKNKLILQWIQQLGVRVADPQL---AISTLSGGNQQKIVLAKWVLTQPRLLILDSPT 431
                 544444477777777766644444...48*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-05     0.017       2      24 ..      38      60 ..      37      87 .. 0.78
   2 ?    2.8   0.0     0.074        83     233     297 ..     145     206 ..      85     212 .. 0.77
   3 !    6.3   0.1    0.0064       7.2     226     296 ..     393     460 ..     326     462 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l G Ng+GKS+L++ +++++ 
  EHU01574.1 38 HCLAGTNGCGKSTLIKVISGVHA 60
                5799**************99853 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.074
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++++lS  +++  a+  al +++   +l++ DEp ++L    +  ll+ +++l+++++ v++++H
  EHU01574.1 145 SVAHLSIAQRQQVAICRALVADA---RLVIMDEPTASLTRTEVNQLLRTVRYLKQKKICVVFVSH 206
                 44555666666666666777766...9***********999999999999999999999999999 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0064
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 +  + +l ++ lS G ++ + l+ ++l ++   +ll++D p  g +  + +++++l+ el+r+g  +il +
  EHU01574.1 393 RVADPQLAISTLSGGNQQKIVLAKWVLTQP---RLLILDSPTVGVDVGAKASIYQLIHELAREGLSIILIS 460
                 444556889999*******99999999999...************************88888899988865 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00051      0.57      24      45 ..      35      56 ..      16      82 .. 0.84
   2 ?    4.2   0.1     0.022        24     158     209 ..     166     219 ..     156     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00051
                SSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAil 45
                 ++ ++ G NG+GKs l+  i+
  EHU01574.1 35 GEVHCLAGTNGCGKSTLIKVIS 56
                567899***********99886 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.022
                 --SEEEECTTTTTS-HHHHHHHHHHHH.HHCTTSEEEEE-SSHH.HCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N 158 paplyllDeidaaLDeknvkkvaellk.eksknaQfivislree.mlekadklv 209
                  a l+++De  a L  ++v+++ + ++  k+k+  ++ +s+r + +le +d++ 
  EHU01574.1 166 DARLVIMDEPTASLTRTEVNQLLRTVRyLKQKKICVVFVSHRLDeVLEISDRVT 219
                 56799******************9999444555777778888540444445544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.6e-05     0.018      95     121 ..      31      57 ..      12      73 .. 0.82
   2 ?   -2.1   0.0       2.7     3e+03      29      69 ..     181     221 ..     152     250 .. 0.68
   3 ?   -3.7   0.0       8.5   9.5e+03      87     116 ..     273     303 ..     241     309 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
                  HHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinallp 121
                  +ll++++ +l+G  G GKStLi+++ +
   EHU01574.1  31 TLLAGEVHCLAGTNGCGKSTLIKVISG 57 
                  46888******************9987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.7
                  T--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHH CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelk 69 
                  ++++n+l r +  +++k+i +v v  ++D + e ++  ++ 
   EHU01574.1 181 RTEVNQLLRTVRYLKQKKICVVFVSHRLDEVLEISDRVTVI 221
                  56677777777788888888887777777666655444444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 8.5
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLi 116
                    ++++++ +l + ++  l+G  G G++ L 
   EHU01574.1 273 AGQYHDVNFRLYEgEVLGLCGLLGSGRTELA 303
                  3455666666655588888888888888775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   4.3e-05     0.048      23      45 ..      35      58 ..      24      66 .. 0.79
   2 ?   -1.4   0.0       1.8     2e+03      10      36 ..     274     300 ..     265     302 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
      AAA_29 23 g.atlltGpsGsGKSTllDAiqal 45
                g ++ l+G++G GKSTl+  i+ +
  EHU01574.1 35 GeVHCLAGTNGCGKSTLIKVISGV 58
                55889************9766655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
      AAA_29  10 gtfdghtieidlkgatlltGpsGsGKS 36 
                 g +++  +++ + ++  l G  GsG +
  EHU01574.1 274 GQYHDVNFRLYEGEVLGLCGLLGSGRT 300
                 455666666654448889999999975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0026       2.9       2      19 ..      39      56 ..      38      68 .. 0.91
   2 ?    4.6   0.1     0.038        42      62     116 ..     170     212 ..     127     222 .. 0.76
   3 ?   -2.0   0.0       3.9   4.4e+03       3      21 ..     291     309 ..     289     329 .. 0.84
   4 ?   -3.0   0.0       8.1   9.1e+03      44      67 ..     441     463 ..     417     467 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0026
                EEESSTTSSHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakava 19
                +l G+ G+GK++l+k + 
  EHU01574.1 39 CLAGTNGCGKSTLIKVIS 56
                799************985 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.038
                 EEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  62 lfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                 +++DE  a            +++ vnqLl+ +  +k+k  k++v+ +++r d++ 
  EHU01574.1 170 VIMDEPTASL----------TRTEVNQLLRTVRYLKQK--KICVVFVSHRLDEVL 212
                 5555544433..........34469**********995..89*******999875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.9
                 EESSTTSSHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake 21 
                 l+G  G G+T la ++   
  EHU01574.1 291 LCGLLGSGRTELALSLFGM 309
                 78999******99988765 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 8.1
                 HHHHHHHHHHHHTSTSEEEEE.ETG CS
         AAA  44 kkirelfkeakekakpsilfi.DEi 67 
                 +  + + + a+e    si++i DE+
  EHU01574.1 441 SIYQLIHELAREGL--SIILIsDEV 463
                 33333334455554..555542665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.16      48      71 ..      38      61 ..      22      69 .. 0.84
   2 ?   -0.9   0.0       1.2   1.3e+03     132     162 ..     358     389 ..     349     411 .. 0.76
   3 ?   -1.0   0.0       1.2   1.4e+03     123     149 ..     444     471 ..     436     479 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
       Rad17 48 LLisGPsGCgkstvvkvLskelgi 71
                  ++G  GCgkst +kv+s  +++
  EHU01574.1 38 HCLAGTNGCGKSTLIKVISGVHAP 61
                5689***************99876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
       Rad17 132 dkklilvedlPnkfy.rdsdalrevirkylrs 162
                 +  l ++++l n+f+ +d  + +++i+++++ 
  EHU01574.1 358 NMVLPILNQLQNRFHlIDEYRKNKLILQWIQQ 389
                 55566789999**9955778999999999975 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
       Rad17 123 qklGddlrtdkklilv.edlPnkfyrds 149
                 q   + +r  +++il+ +++P+++y   
  EHU01574.1 444 QLIHELAREGLSIILIsDEVPEVWYNCD 471
                 4445667888999999567999887654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00044       0.5      30      50 ..      32      52 ..      25      66 .. 0.88
   2 ?    0.7   0.1       0.3   3.4e+02     101     141 ..     155     195 ..     122     206 .. 0.60
   3 ?   -0.4   0.0      0.66   7.4e+02      31      65 ..     284     320 ..     279     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00044
      AAA_25 30 lpagelallaGapgtGKttla 50
                l age++ laG  g+GK+tl 
  EHU01574.1 32 LLAGEVHCLAGTNGCGKSTLI 52
                568****************96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.3
      AAA_25 101 arllvldlagv.eslpLfakdrggtl.ltadvdaleaaieeve 141
                 ++++++ +     + +L+ +d   +  +  +v++l +++++ +
  EHU01574.1 155 QQVAICRA--LvADARLVIMDEPTASlTRTEVNQLLRTVRYLK 195
                 33333332..224556666665555545566777777777654 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.66
      AAA_25  31 pagelallaGapgtGKttlaldlalava..tGkpwlg 65 
                  +ge+  l+G  g+G t lal+l   +   +G+ wl+
  EHU01574.1 284 YEGEVLGLCGLLGSGRTELALSLFGMTRpdRGRIWLD 320
                 5899999***************976655777777766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0011       1.2       2      19 ..      39      56 ..      39      81 .. 0.92
   2 ?   -1.9   0.0         4   4.5e+03      25      66 ..     157     196 ..     103     214 .. 0.63
   3 ?    2.8   0.0      0.14   1.6e+02       2      18 ..     290     306 ..     289     402 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
      AAA_18  2 lltGtpGvGKttlakeLs 19
                +l+Gt G+GK+tl k +s
  EHU01574.1 39 CLAGTNGCGKSTLIKVIS 56
                79***********99875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4
      AAA_18  25 gvnlrdvakenglllevdpealdeskrldedkldklldalee 66 
                 + ++r ++++ +l+++++p    +  r + ++l + ++ l++
  EHU01574.1 157 VAICRALVADARLVIMDEPT--ASLTRTEVNQLLRTVRYLKQ 196
                 45555566666666666666..55555555555555555555 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.14
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 +l+G  G+G t+la  L
  EHU01574.1 290 GLCGLLGSGRTELALSL 306
                 589**********9888 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013        14      22      40 ..      37      55 ..      23      63 .. 0.84
   2 ?   -0.2   0.0      0.67   7.5e+02     142     164 ..     184     205 ..     133     216 .. 0.87
   3 ?    5.1   0.0     0.016        18     102     131 ..     438     467 ..     426     474 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.013
    ATPase_2 22 iyfiYGpegsGKtaLlkei 40
                +  + G  g+GK++L+k i
  EHU01574.1 37 VHCLAGTNGCGKSTLIKVI 55
                5667799*********987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.67
    ATPase_2 142 vkeLlnliesltkekhlcvvicl 164
                 v++Ll+ + + +k+k++cvv+++
  EHU01574.1 184 VNQLLRTVRY-LKQKKICVVFVS 205
                 7889999999.899999999985 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.016
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqkli 131
                 ++++i +l+ ++ ++g  ii+i De++++ 
  EHU01574.1 438 AKASIYQLIHELAREGLSIILISDEVPEVW 467
                 567889999*****************9875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-05     0.048      12      44 ..      23      56 ..      22     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsileald 44
                R+l+d+++ l    + +l G+N++GKS++++++ 
  EHU01574.1 23 RALSDISLTLLAGeVHCLAGTNGCGKSTLIKVIS 56
                6677766665544599***************995 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.002       2.2      19      46 ..      36      64 ..      28      71 .. 0.80
   2 ?    2.4   0.1     0.097   1.1e+02      60     118 ..     134     198 ..     115     207 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.g 46
                 v++l G  G GK+t++k++  +++ + g
  EHU01574.1 36 EVHCLAGTNGCGKSTLIKVISGVHAPDrG 64
                3899****************998876655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.097
      AAA_30  60 kvLaeelgieastiakllkrlk.....grarlepgtllivDE.agmvdtkqlaallkaaek.agak 118
                 ++L+ +l+++ s  +  + + +      ra +++++l+i DE ++ +  +++++ll+ ++  ++ k
  EHU01574.1 134 EELQFDLNLDESVAHLSIAQ-RqqvaiCRALVADARLVIMDEpTASLTRTEVNQLLRTVRYlKQKK 198
                 45555555544443333333.236777446677889******534456667777777776522233 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0083       9.3      18      39 ..      32      55 ..      13      61 .. 0.79
   2 ?    3.0   0.0     0.086        96      13      37 ..     282     304 ..     267     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0083
                H..TEEEEEEESTTSSHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrgl 39
                l  g+v +L G  G+GK+tl++ +
  EHU01574.1 32 LlaGEVHCLAGTNGCGKSTLIKVI 55
                1348899**************987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.086
                 HHHHCHTEEEEEEESTTSSHHHHHH CS
        TsaE  13 klakalgdvilLeGdLGaGKTtlvr 37 
                 +l +  g+v+ L G LG+G T l+ 
  EHU01574.1 282 RLYE--GEVLGLCGLLGSGRTELAL 304
                 3333..88999**********9975 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00085      0.95      20      48 ..      39      68 ..      35      75 .. 0.81
   2 ?   -1.1   0.1      0.84   9.4e+02     133     178 ..     144     199 ..     140     215 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00085
  Zeta_toxin 20 llgGqpGAGKselaellkdele.rqgnvvr 48
                 l+G  G+GKs+l++ +   ++  +g+ +r
  EHU01574.1 39 CLAGTNGCGKSTLIKVISGVHApDRGSEIR 68
                69**************99988855555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.84
  Zeta_toxin 133 kelSrlgvldRyeee.vae....gRlvpkeehdea.....feglresvealeeekq 178
                 + +++l++++R +     +    +Rlv  +e  ++     +++l ++v+ l+++k 
  EHU01574.1 144 ESVAHLSIAQRQQVAiCRAlvadARLVIMDEPTASltrteVNQLLRTVRYLKQKKI 199
                 66778888888877731113333444433332222111114444555555555443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00048      0.54      21      39 ..      37      55 ..      22      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00048
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                + ++ G NG+GK+T++  i
  EHU01574.1 37 VHCLAGTNGCGKSTLIKVI 55
                5688999********9877 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3      0.07        78       9      23 ..      39      53 ..      35      60 .. 0.88
   2 ?    4.3   0.4     0.042        47      74     128 ..     145     204 ..     119     211 .. 0.66
   3 ?    0.2   0.0      0.76   8.5e+02       8      26 ..     289     307 ..     284     324 .. 0.85
   4 ?   -3.2   0.0       8.6   9.6e+03      40      62 ..     429     451 ..     414     462 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.07
      AAA_22  9 vvtGesGtGKTtllr 23
                ++ G  G+GK+tl++
  EHU01574.1 39 CLAGTNGCGKSTLIK 53
                67899********97 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.042
      AAA_22  74 sseellealeqalrarav....ielliiDEaqh.lrseealeeLrsllnl.srkgvqliLv 128
                 s  +l  a +q++  +++     +l+i DE    l + + +++L + +   ++k++ +++v
  EHU01574.1 145 SVAHLSIAQRQQVAICRAlvadARLVIMDEPTAsL-TRTEVNQLLRTVRYlKQKKICVVFV 204
                 444444333444444444455666******99999.9999999988888889999999998 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.76
      AAA_22   8 lvvtGesGtGKTtllrrll 26 
                 l ++G  G+G+T l+  l+
  EHU01574.1 289 LGLCGLLGSGRTELALSLF 307
                 5689********9998776 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 8.6
      AAA_22  40 pevvfvtlpsstsskdllrellr 62 
                 +++v v++ ++ s  +l +el+r
  EHU01574.1 429 SPTVGVDVGAKASIYQLIHELAR 451
                 55566666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 3926.92
//
Query:       EHU01575.1  [L=326]
Description: periplasmic substrate binding component of an ABC superfamily sugar transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-49  167.2   0.4    6.1e-49  166.9   0.4    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    0.00011   21.7   0.0    0.00017   21.1   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.4   6.8e-53   6.1e-49       2     256 ..      27     281 ..      26     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 6.8e-53
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                   g+vvk  ++p+f+a++ g+++ a++ g++   vg++ +d a Qv +ied+ia++vd i v p+d++ l+p+l++a++aGI+V++  s+  ++     
    EHU01575.1  27 GIVVKIGGIPWFNAMEAGIKSEAAKRGIDAWMVGPTAADPALQVRAIEDLIAQKVDIIGVVPNDPKVLEPVLQRAREAGIKVITHESP-GQKFANWD 122
                   7999************************************************************************************.99999999 PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCC CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.ypgikivaevaganwdaekaqqalealltanp.ldgilaandg 193
                   +   d  + G   +++la+++ ++ gk++i+ Gs++ p ++++++++ ++ k+ yp++++v++  g++++ +++ + +++l++++p l+gila+++ 
    EHU01575.1 123 FELVDAATHGINHMKALAQCMHDE-GKYAIYVGSLTVPLHQQWTDAALDYQKQhYPNMQLVTDKFGVGESLDESIRTTNELMSKYPdLKGILAFGSQ 218
                   ************************.****************************9********99999****************9966********** PP

                   HHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 194 maegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   + +ga +a+ + +++++v+v+g  ++ +  +++  G i++   ++p+  g++ +++a ++ k+
    EHU01575.1 219 GPIGAGRAVMNRNKTNQVCVIGAFSPGQGAQLVNRGAIKGGYIWNPHTAGEVFIRIAEKVEKN 281
                   *********************************************************998666 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.9e-08   0.00017       4     134 ..      26     158 ..      23     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.9e-08
                   EEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   4 lglvlpqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdts..fdditakaesgipvialedaidapdgvP 96 
                   +g+v++    P+f  + +gi+ +a++ g+d  ++     + ++  +ai+ l a+++d + +   d++   + +++  e+gi+vi  e  +++    +
    EHU01575.1  26 MGIVVKIGGIPWFNAMEAGIKSEAAKRGIDAWMVGPTAADPALqvRAIEDLIAQKVDIIGVVPNDPKvlEPVLQRAREAGIKVITHESPGQKFANWD 122
                   6899999999********************999965555555559************8888888888755777777777********9988888899 PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesalta 134
                     + d+ + g +  + L + +h ++    ++   +lt+
    EHU01575.1 123 FELVDAATHGINHMKALAQCMHDEG--KYAIYVGSLTV 158
                   9999******************998..44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2742.00
//
Query:       EHU01576.1  [L=276]
Description: L-fucose operon activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-44  150.5   0.0    5.1e-44  150.0   0.0    1.2  1  DeoRC            DeoR C terminal sensor domain
      3e-16   58.9   1.1      7e-16   57.7   0.6    1.9  2  HTH_DeoR         DeoR-like helix-turn-helix domain
      9e-05   22.3   1.1     0.0003   20.6   0.3    2.1  2  MarR_2           MarR family
    0.00013   21.5   0.2    0.00031   20.3   0.2    1.6  1  GntR             Bacterial regulatory proteins, gntR family
    0.00026   20.8   0.5      0.026   14.3   0.1    2.6  2  HxlR             HxlR-like helix-turn-helix
     0.0031   17.4   0.5     0.0093   15.9   0.2    1.9  2  MarR             MarR family
     0.0033   17.3   0.2     0.0083   16.1   0.2    1.7  1  HTH_11           HTH domain
     0.0036   17.3   0.8     0.0073   16.3   0.1    1.9  2  HTH_20           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.023   14.6   0.1      0.069   13.1   0.1    1.8  1  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.048   13.5   0.1        0.1   12.5   0.1    1.6  1  HTH_5            Bacterial regulatory protein, arsR family
      0.054   13.1   0.9       0.15   11.7   0.9    1.8  1  HTH_24           Winged helix-turn-helix DNA-binding
      0.057   13.4   0.1       0.14   12.1   0.1    1.7  1  HTH_36           Helix-turn-helix domain
        0.1   12.9   0.0       0.19   12.1   0.0    1.4  1  Penicillinase_R  Penicillinase repressor


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   3.7e-47   5.1e-44       2     160 .]      87     244 ..      86     244 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.0 bits;  conditional E-value: 3.7e-47
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 ++++K +IAk+A+++i  gd+++ld++tT+++lar+L++  +ltv Tnsl+++++L+++ +i+ i lGGe++ + e ++g ++e+ l++f+++k+f+++
  EHU01576.1  87 HVDAKMAIAKRALDFISVGDCLLLDSSTTCFYLARQLPDI-ELTVLTNSLRIVQTLAARGSIRTICLGGEYSDRYEDFHGIVTEQPLKEFQINKIFFSC 184
                 789*************************************.********************************************************** PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 +++ ++g l + +e+ a +k++li aa+r+ ll DssKf + +f+ri++  ++d litD+
  EHU01576.1 185 SSLGNDGYLREGNERHAHLKQQLILAAERKHLLLDSSKFLRPSFARICHYRDVDFLITDQ 244
                 ***********************************************************6 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.6   5.1e-19     7e-16       1      53 [.       6      58 ..       6      62 .. 0.96
   2 ?   -2.0   0.0       2.3   3.2e+03       5      17 ..     137     149 ..     136     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 5.1e-19
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavs 53
                R++ i++ l   g + v el++l+ vS++TiRRDL++Le++g+l R hGGav 
  EHU01576.1  6 RQQRIIDELMCNGRVIVAELTALCRVSQETIRRDLAQLEKKGILQRSHGGAVP 58
                9**************************************************85 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
    HTH_DeoR   5 ilellkqqgklsv 17 
                 i++ l+ +g++++
  EHU01576.1 137 IVQTLAARGSIRT 149
                 8999999999988 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   2.2e-07    0.0003       7      56 ..       7      54 ..       5      61 .. 0.92
   2 ?   -1.0   0.0       1.2   1.7e+03      40      53 ..     136     149 ..     136     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.2e-07
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                q r++ +L ++++  + v+el++ +++s+ ++ r l+ L+++G ++r+ g
  EHU01576.1  7 QQRIIDELMCNGR--VIVAELTALCRVSQETIRRDLAQLEKKGILQRSHG 54
                7799********9..******************************99854 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
                 HHHHHHHHTTSEEE CS
      MarR_2  40 rilkrLvaaGLver 53 
                 ri++ L a+G +++
  EHU01576.1 136 RIVQTLAARGSIRT 149
                 899*******9986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   2.3e-07   0.00031      11      61 ..       8      56 ..       7      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-07
                HHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 11 edIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++I++ el+++ +   + eL a   Vs  t+R+ L +Le +g+++r +g++
  EHU01576.1  8 QRIID-ELMCNGRV-IVAELTALCRVSQETIRRDLAQLEKKGILQRSHGGA 56
                56777.67777777.79*******************************986 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.9e-05     0.026      10      61 ..      10      61 ..       6      91 .. 0.83
   2 ?    4.1   0.0     0.029        40      24      44 ..     119     139 ..     107     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                HHHHHTT.S-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EE CS
        HxlR 10 ilvellk.gkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkv 61
                i+ el++ g+    el++ +  +sq+++ + L +Le++g+++r+    vP k 
  EHU01576.1 10 IIDELMCnGRVIVAELTALC-RVSQETIRRDLAQLEKKGILQRSHGGAVPAKR 61
                66777765888889998877.************************99999874 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.029
                 HHHHSTTS-HHHHHHHHHHHH CS
        HxlR  24 lkralpkisqkmLaqrLreLe 44 
                 l+r+lp+i   +L+++Lr  +
  EHU01576.1 119 LARQLPDIELTVLTNSLRIVQ 139
                 899**************9776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   6.8e-06    0.0093       5      51 ..       7      53 ..       5      54 .. 0.93
   2 ?   -1.9   0.0       2.4   3.3e+03       6      15 ..     135     144 ..     116     150 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.8e-06
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                q +i+  l ++g   v+eL     vs+ t+ r l +LekkG ++Rs+
  EHU01576.1  7 QQRIIDELMCNGRVIVAELTALCRVSQETIRRDLAQLEKKGILQRSH 53
                66888899999**********************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                 HHHHHHHHHS CS
        MarR   6 fviLrilyeq 15 
                 ++i+ +l+ +
  EHU01576.1 135 LRIVQTLAAR 144
                 3334444444 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2     6e-06    0.0083       1      44 [.       6      48 ..       6      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6e-06
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                R++ i+  L   +g +  +eL     vS  t+rrd+++Le++g+
  EHU01576.1  6 RQQRIIDEL-MCNGRVIVAELTALCRVSQETIRRDLAQLEKKGI 48
                788899999.445559999999999****************994 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.3e-06    0.0073      12      55 ..       7      50 ..       5      55 .. 0.93
   2 ?   -2.2   0.0       3.3   4.6e+03      22      41 ..     111     131 ..     107     143 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.3e-06
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                + ri ++L+ ++ + ++el +++++s+ t+++ L++Le+ g++ 
  EHU01576.1  7 QQRIIDELMCNGRVIVAELTALCRVSQETIRRDLAQLEKKGILQ 50
                679************************************99986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.3
                 CTTB-HHHHHHHH.TS-HHHH CS
      HTH_20  22 aegltaselaerl.dlskntl 41 
                 +   t+  la++l d+  + l
  EHU01576.1 111 DSSTTCFYLARQLpDIELTVL 131
                 667788888888876655544 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     5e-05     0.069      26      54 ..      24      52 ..       6      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
                HHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreglisrg 54
                el +++ +++et+ r l++L+++g+++r+
  EHU01576.1 24 ELTALCRVSQETIRRDLAQLEKKGILQRS 52
                7788999*******************974 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.6e-05       0.1      11      46 ..      15      50 ..       7      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.6e-05
                HTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 11 LaegelcvcelaeelglsqstvShHLkkLreaGLVe 46
                +++g   v el++  ++sq t+++ L++L++ G+++
  EHU01576.1 15 MCNGRVIVAELTALCRVSQETIRRDLAQLEKKGILQ 50
                556777799************************985 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   0.00011      0.15       4      47 ..       6      49 ..       5      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                 + +I+ +L+ n+r   +eL   + +S+ t++r l +Le++G++
  EHU01576.1  6 RQQRIIDELMCNGRVIVAELTALCRVSQETIRRDLAQLEKKGIL 49
                5789**************************************97 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0001      0.14      29      55 .]      23      49 ..      16      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
      HTH_36 29 etlakrlglsknTvsraikeLeqlGyi 55
                + l +++ +s +T++r ++ Le++G++
  EHU01576.1 23 AELTALCRVSQETIRRDLAQLEKKGIL 49
                678899*******************97 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.19      20      58 ..      18      56 ..       9      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                     HHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETT CS
  Penicillinase_R 20 vkevveeleeekelaysTVktllrrLvkKgllsrekegr 58
                      + +v+el + + ++++T++  l +L+kKg+l+r + g 
       EHU01576.1 18 GRVIVAELTALCRVSQETIRRDLAQLEKKGILQRSHGGA 56
                     577999****************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2020.36
//
Query:       EHU01577.1  [L=355]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-91  307.2   0.0    1.7e-91  307.1   0.0    1.0  1  DUF1176   Protein of unknown function (DUF1176)


Domain annotation for each model (and alignments):
>> DUF1176  Protein of unknown function (DUF1176)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.1   0.0   9.7e-96   1.7e-91       2     327 ..      26     346 ..      25     347 .. 0.95

  Alignments for each domain:
  == domain 1  score: 307.1 bits;  conditional E-value: 9.7e-96
     DUF1176   2 ksfkDWqvaCDNtrtCraagyaaedglapvsllltReAgadapvslrvdlaeeeee...kkagklellidgkdl....gelkaaadkaea..tldaaqv 91 
                 k f+DWq++C+N+ +C+a++++ + gl   +++l+R+Agad+++ lr+d++++ +     +a k +ll+d+++l    ++ +    + ++  t ++  +
  EHU01577.1  26 KLFSDWQLTCNNAAFCVARSTQGDRGL---VMTLSRHAGADDQPLLRIDYGSAYSGalpGPALKDNLLVDQRRLrpdfKHWD---VEPHHlaTRNPIAI 118
                 679*****************9999999...***********************999999999************86553333...232334699***** PP

     DUF1176  92 qallaalkkaskielkaggkrvelSlaGlsAaLlkmDeaQgRvgtvtAlvkkGnkpesaVppapaapvikaaeasaapkrelseaelaallkallaakk 190
                 +++l+   +a++++l+ +++  ++Sl+G++AaLl+mD++QgRv++++A+v++G+++   Vp+apa+p++ + +a++ p   l+++e++ l++    +++
  EHU01577.1 119 NEFLELTMDAKNLQLTFSASP-QVSLRGMKAALLYMDDVQGRVNSMSAWVRRGERN--GVPAAPAIPQLPPPMAAPVP---LTREETSGLID----YGT 207
                 ********************9.7*******************************99..9******************9...*********99....9** PP

     DUF1176 191 ssleeeeceldspeeerseevtrLsdtkaLvslsCwrgAYNegyalwvvdrakpyeprlltls...a.dseeskedelvnadydpasgelsslaKgRGl 285
                 ++ ++++c+ld+ ++e s  v +L+d+kaL+++sC++gAYN+ ++++ v+ra py +r ++l+   + ++  +++ el+nadyd a+g+l+++ KgRGl
  EHU01577.1 208 WRVNSDTCSLDPLRREVS--VSPLTDKKALLLVSCEMGAYNVIDRAFEVTRAPPYVARGVSLTlpfTpPEGGERQLELINADYDAATGQLYTFGKGRGL 304
                 ****************99..****************************************99999966999999************************* PP

     DUF1176 286 GDCgssasWvwdGkrFvlseeattgeCrgiaaggaWpllwvv 327
                 GDCg++++W+++G++Fvl+e+a++++C++++++++Wp+lwv 
  EHU01577.1 305 GDCGTASRWQFNGEHFVLAEYAEESTCDAWHSSDDWPTLWVS 346
                 ****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2836.65
//
Query:       EHU01578.1  [L=389]
Description: beta-lactamase/D-alanine carboxypeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-65  219.9   0.4    6.2e-65  219.6   0.4    1.1  1  Beta-lactamase  Beta-lactamase
     0.0056   16.1   0.0      0.016   14.7   0.0    1.7  2  Peptidase_S11   D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.6   0.4   6.9e-69   6.2e-65      11     314 ..      45     357 ..      31     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 219.6 bits;  conditional E-value: 6.9e-69
                     HTTESEEEEEEEETTEEEEEEEEEEEETTTTE..EESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST...TCTTGGGTTEBHHHHH CS
  Beta-lactamase  11 qggipGvavavvrdgkvvldkggGvadleggr..pvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP...efagpgkgkiTlrdLl 100
                       g+ G+a++ +++++ v++   G  d + g+    + d+l riaS++K++t+ ++ +++e+G+++Lddp+sky P   + +g ++++i+l +L+
      EHU01578.1  45 ASGATGMALVAIDGNQRVFTSF-G--DTRPGNniRPQKDSLIRIASLSKLMTSEVMVKMAERGEIRLDDPLSKYAPpgkRVPGFDGQPIRLINLA 136
                     56789************97666.5..555555116666*****************************************99999*********** PP

                     TTHSSCSSSSTSTTCTSHHHTH...HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGGG CS
  Beta-lactamase 101 tHtsGlpdlfasdlleeaaada...aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdpr 192
                     tHtsGlp++++ +++ +    +    e +  l t+ +k apGt+ +Ysn+gy+llg +l +++g+++  l+++ i+rpLgmkdt+++p +++++r
      EHU01578.1 137 THTSGLPREQPGGKPHRPVFVWptqSERWNWLNTASLKAAPGTNAAYSNLGYDLLGDALSRAAGKPYPALFQQLITRPLGMKDTTFTPSPEQCAR 231
                     *********8888887777777************************************************************************* PP

                     BEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHH.......HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH CS
  Beta-lactamase 193 daagytgngpearappanlpaeaegagglistardlarfl.......glalegglllsaetlaqltaklssgttrpagiraglglGwvladktga 280
                     +  + +g++p     +a       g+gg++st++d++r++         ++ +++   ++   +  +  +     ++g +++lg+Gwv++ ++ +
      EHU01578.1 232 LMVAEKGASPCNNTLAAI------GSGGVYSTPDDMGRWMqqflnssVNRRTPQIDRLQTLIYRRDQLHKVDGMDVPGKADALGMGWVYMGPSKG 320
                     *****7766554444444......6899************988777644444555555555555588889999999999***********99999 PP

                     .TEEEEEEE..STEEEEEEEECGGTEEEEEEESBCSS CS
  Beta-lactamase 281 .pgtfghtG..ggygtyvfvdpeanlvvavltnrdpp 314
                      pg++++tG  gg+ ty++++p++n++v+v+++r p 
      EHU01578.1 321 rPGIIQKTGggGGFITYIAMVPQNNVGVFVVVTRSPL 357
                     9********************************9986 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.8e-06     0.016      33      65 ..      80     112 ..      75     118 .. 0.89
   2 ?   -2.7   0.0      0.35   3.1e+03     133     142 ..     214     223 ..     212     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-06
                    TS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEE CS
  Peptidase_S11  33 devveiASltKlmTaylvlealkkgklkeddkv 65 
                    d   +iASl+KlmT+ ++++  ++g++ +dd++
     EHU01578.1  80 DSLIRIASLSKLMTSEVMVKMAERGEIRLDDPL 112
                    66789***********************99985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.35
                    HTT-TT-B-S CS
  Peptidase_S11 133 elGlkntkfv 142
                     lG+k+t+f+
     EHU01578.1 214 PLGMKDTTFT 223
                    59******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2808.43
//
Query:       EHU01579.1  [L=228]
Description: two-component response regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-17   61.6   0.0    2.9e-16   59.6   0.0    1.9  2  Response_reg  Response regulator receiver domain
    4.6e-05   23.1   0.8    9.2e-05   22.2   0.1    1.9  2  HTH_IclR      IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.045   13.5   0.0      0.087   12.6   0.0    1.4  1  HTH_DeoR      DeoR-like helix-turn-helix domain
       0.06   12.9   0.0       0.13   11.8   0.0    1.6  1  HTH_24        Winged helix-turn-helix DNA-binding
       0.16   12.4   0.0       0.37   11.3   0.0    1.6  1  HTH_40        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   8.2e-20   2.9e-16       1     109 [.       8     117 ..       8     120 .. 0.94
   2 ?   -0.5   0.0      0.37   1.3e+03      27      47 ..     123     143 ..     115     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 8.2e-20
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vliv+D+p +++l ++l+  + +++ ++ a + +ea ++l  ++++l+llD  +p+ +G++l+      + ++ +i++ta+s++++  +a++ ga+d
    EHU01579.1   8 VLIVEDEPELAQLHAELIGkHPELRLIGIAGSLAEARQQLAISAPQLLLLDNYLPDGKGITLIGDPLLAHANCSIIFITAASDMDTCSQAIRNGAFD 104
                   8*****************97799999************************************988666666************************** PP

                   EEESSG-HHHHHH CS
  Response_reg  97 flsKpfdpeeLlk 109
                   ++ Kp++ ++L  
    EHU01579.1 105 YVLKPVSWKRLNR 117
                   ******9998865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.37
                   EEESSHHHHHHHHHHHHESEE CS
  Response_reg  27 aeaedgkealellkeekvdli 47 
                    +++d +  ++++++++vd++
    EHU01579.1 123 IAFADQQRTWKIVDKKNVDVL 143
                   578999999**********96 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   4.5e+03      11      22 ..      39      50 ..      32      51 .. 0.75
   2 !   22.2   0.1   2.6e-08   9.2e-05      11      49 ..     171     210 ..     166     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                T-CTTBSS-BHH CS
    HTH_IclR 11 alaeapqeltls 22
                 laea+q l +s
  EHU01579.1 39 SLAEARQQLAIS 50
                588888887765 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.6e-08
                 T-CTTBSS-.BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  11 alaeapqel.tlselArrtglpkStvhRlLqtLvelGyve 49 
                 +++ a+ +l ++ e+  +tgl+k+t++R+L   ve G+++
  EHU01579.1 171 LFTPATTRLfSVDEVMTETGLSKTTARRYLEHCVETGFLT 210
                 67888888889***************************96 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.4e-05     0.087      15      45 ..     180     210 ..     175     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
    HTH_DeoR  15 lsveelvellgvSeaTiRRDLneLeeqgllt 45 
                  sv+e++ + g S++T+RR L+  +e g lt
  EHU01579.1 180 FSVDEVMTETGLSKTTARRYLEHCVETGFLT 210
                 69*****************999999988765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.7e-05      0.13      21      47 ..     183     209 ..     181     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
      HTH_24  21 reLAerlglSpstvnrrlkrLeeeGlI 47 
                  e+  ++glS++t +r+l+ ++e G++
  EHU01579.1 183 DEVMTETGLSKTTARRYLEHCVETGFL 209
                 68899******************9986 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.37      13      46 ..     180     212 ..     176     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
      HTH_40  13 lsieeIAkerglkesTIegHLaelieegeeidle 46 
                  s++e+++e gl+++T  ++L +++e+g  + +e
  EHU01579.1 180 FSVDEVMTETGLSKTTARRYLEHCVETGF-LTVE 212
                 589************************97.6555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1660.77
//
Query:       EHU01580.1  [L=545]
Description: sensor kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-17   64.1   0.4    2.9e-17   63.1   0.4    1.4  1  sCache_3_2   Single cache domain 3
    1.6e-15   57.6   0.0    3.4e-15   56.5   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      3e-09   36.7   0.0    8.2e-09   35.3   0.0    1.7  1  HATPase_c_5  GHKL domain
    1.4e-07   31.1   1.1    3.6e-07   29.8   1.1    1.6  1  SPOB_a       Sensor_kinase_SpoOB-type, alpha-helical domain
    0.00013   21.9   0.0    0.00031   20.7   0.0    1.6  1  PAS          PAS fold
    0.00028   20.9   0.0    0.00064   19.7   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00029   20.8   0.0    0.00065   19.7   0.0    1.6  1  PAS_8        PAS domain
     0.0008   19.6   0.0     0.0029   17.8   0.0    2.0  2  PAS_9        PAS domain
     0.0059   16.7   0.0      0.024   14.8   0.0    2.1  2  PAS_7        PAS fold
      0.008   16.4   0.0       0.33   11.2   0.0    2.4  2  PAS_4        PAS fold
  ------ inclusion threshold ------
       0.19   11.9   0.4        1.3    9.2   0.0    2.3  3  AAA_lid_10   AAA lid domain


Domain annotation for each model (and alignments):
>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.4   1.8e-20   2.9e-17       4     128 ..      34     157 ..      32     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.8e-20
  sCache_3_2   4 rdlaealeeralalatsvagsrivrvaltdrapesglqalvddvrritgvdyvvitDeegrvlahpdpa.evgrklsgpataaalkagrayvgtvtgtl 101
                 r+l +a  +ra+  a+++a  ++ r a++d ++ ++++ l  +++r +++++ vi D +g  l+h+  a +vg++l  ++++aa+ ag++ + + tg+l
  EHU01580.1  34 RQLYQAMSMRAKVQADEIALIPELRKAVAD-RDIPAINMLMRAIARKSDASFMVIGDNRGLHLFHSVTAdRVGKPL-VGGDNAAVLAGKSITTIRTGGL 130
                 78889999**********************.8899999******************************99******.********************** PP

  sCache_3_2 102 gpslrvklPvfdadgrviGivsvGvkq 128
                 g slr k P++ ++g+v+GivsvG+  
  EHU01580.1 131 GISLRSKSPILNDRGQVVGIVSVGYLA 157
                 ************************976 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.1e-18   3.4e-15       4     109 ..     421     526 ..     419     529 .. 0.80

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.1e-18
                 HHHHHHHHHHHHHHHHHHS....TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   4 krLrqiisnlvdNavkfat....kageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                   L  +i nl+dNa+++++    + + +ev ik s  +l i+v D G Gi +++++++fe+ ++    + + g +G+Gl++ ++++++ gG+i+v+++ 
  EHU01580.1 421 AELISVIGNLLDNAIEATQrapmPHEPVEVLIKLSARELIIEVADHGVGIAPAIREHMFERGVT----TKTRGDHGIGLYLTESYITRAGGTIEVSDNV 515
                 57889************443323333445555544679**********************5555....36679***********6666*******9999 PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                  rG  f +++p
  EHU01580.1 516 PRGAIFSLFIP 526
                 *******9988 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   5.1e-12   8.2e-09       3      88 ..     420     512 ..     418     521 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.1e-12
  HATPase_c_5   3 dldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg......ek..kklesskskkeehGiGlksireivkkykgnlsie 88 
                  + +l++++gnlLdNAiea ++ +  ++ +++ ++ + + lii++  +  g      e   ++  ++ +++++hGiGl   ++ + + +g+++++
   EHU01580.1 420 EAELISVIGNLLDNAIEATQRAPMPHEPVEVLIKLSARELIIEVADHGVGiapairEHmfERGVTT-KTRGDHGIGLYLTESYITRAGGTIEVS 512
                  789********************99999******************97774544421123333354.5699*******9999999999998875 PP

>> SPOB_a  Sensor_kinase_SpoOB-type, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   1.1   2.2e-10   3.6e-07       5      52 ..     321     368 ..     318     374 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.2e-10
      SPOB_a   5 eikelkeliklLrsqRHDflNhLQvIsGylqLgkydkaeeyieevvke 52 
                 +++++k +++ Lr  RH+ lN++  +sG+l++g+ ++a +yie  +++
  EHU01580.1 321 QLSQVKRYVDNLRIMRHEQLNRMNTLSGLLHMGRFEDAIDYIEAQSEH 368
                 78899**************************************98876 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.9e-07   0.00031       4      48 ..     213     259 ..     210     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.9e-07
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTH..HHCTTSBGGG CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsr..eevlgkslld 48 
                 +a++es+ ++++v++e   i  +N+aa++llGls+  e + g+s++ 
  EHU01580.1 213 KAMMESIYEGVIVINEHLQIEVINQAARKLLGLSQsaEALRGQSVSQ 259
                 69*********************************988888888875 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.9e-07   0.00064      39     108 ..     430     501 ..     405     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.9e-07
  HATPase_c_2  39 actNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep.keslkegGrGlalikgl 108
                  ++ Na+e+ ++    ++pvev ++ ++++l +evaD+G g  p+ +++  e +  +  +  +G+Gl+l++++
   EHU01580.1 430 LLDNAIEATQRAPMpHEPVEVLIKLSARELIIEVADHGVGIAPAIREHMFERGVtTKTRGDHGIGLYLTESY 501
                  5679***999988889************************77765555554444479999********9986 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     4e-07   0.00065       4      48 ..     213     260 ..     210     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4e-07
       PAS_8   4 ralfesspdgiavvdlgd..rivdvNqaalellGys...adlkgellgql 48 
                 +a++es+ +g++v++  +  +i  +Nqaa +llG+s   + l+g+ + q+
  EHU01580.1 213 KAMMESIYEGVIVIN--EhlQIEVINQAARKLLGLSqsaEALRGQSVSQI 260
                 689***********9..4458***************55444444444344 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.3     1e+04      81      96 ..     136     151 ..     122     153 .. 0.79
   2 !   17.8   0.0   1.8e-06    0.0029       2      41 ..     221     268 ..     221     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.3
       PAS_9  81 taspvkdddgelvgii 96 
                 + sp+ +d g +vgi+
  EHU01580.1 136 SKSPILNDRGQVVGIV 151
                 5689999999999965 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.8e-06
       PAS_9   2 dgilidnpdgrilyaNeaalrllG..yspeevlgksitdlf......v 41 
                 +g++++n++  i+ +N+aa++llG  +s+e++ g+s+++++      +
  EHU01580.1 221 EGVIVINEHLQIEVINQAARKLLGlsQSAEALRGQSVSQIIspvpflS 268
                 5889899*****************7666999**********5554440 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05     0.024       2      45 ..     217     261 ..     216     286 .. 0.85
   2 ?   -2.4   0.0       3.1   5.1e+03      96     106 ..     301     311 ..     270     314 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
       PAS_7   2 enmsqGisvfDadlrLvawNrrylelldlpeelv.qvgvpleell 45 
                 e++ +G++v+++ l++ ++N+  ++ll+l+++     g ++++++
  EHU01580.1 217 ESIYEGVIVINEHLQIEVINQAARKLLGLSQSAEaLRGQSVSQII 261
                 8999*************************9986424566666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
       PAS_7  96 pdgGfVttytD 106
                 +  G+V+++ D
  EHU01580.1 301 ALMGWVISFRD 311
                 44799999998 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.095   1.6e+02      67     100 ..     123     152 ..      91     155 .. 0.72
   2 !   11.2   0.0   0.00021      0.33       2      46 ..     217     263 ..     216     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.095
       PAS_4  67 efleelllpgeerhyelrllPlrdesGevigvlv 100
                 ++       g+  + + +++P+++++G+v+g++ 
  EHU01580.1 123 TTIR----TGGLGISLRSKSPILNDRGQVVGIVS 152
                 4444....5777888999*************985 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00021
       PAS_4   2 dslpdalavldpdgrvlyaNaaaaelfga..ppeellGktlaellpe 46 
                 +s+ ++++v++++++++ +N+aa++l+g+  ++e+l+G+++ ++ ++
  EHU01580.1 217 ESIYEGVIVINEHLQIEVINQAARKLLGLsqSAEALRGQSVSQIISP 263
                 677789*******************9886225788999998887766 PP

>> AAA_lid_10  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.95   1.5e+03       7      61 ..      23      80 ..      18      83 .. 0.51
   2 ?    9.2   0.0   0.00077       1.3      19      65 ..     204     250 ..     188     260 .. 0.88
   3 ?   -3.1   0.0       5.5   8.9e+03      26      53 ..     435     464 ..     429     468 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.95
                ---------------------....-----------------------HHHHHHHHHHT CS
  AAA_lid_10  7 lnksffyvnektgsailieae....eekkqklPenvkkvrlkisddaieiasrkvAsvs 61
                l+ s++yv   ++  + +  +     ++ + +Pe  k v  +    ai++  r +A  s
  EHU01580.1 23 LLGSYYYVSITRQLYQAMSMRakvqADEIALIPELRKAVADR-DIPAINMLMRAIARKS 80
                788999987665544444444111133333445444444433.3345666666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00077
                 --------------------------------HHHHHHHHHHT-TTT CS
  AAA_lid_10  19 gsailieaeeekkqklPenvkkvrlkisddaieiasrkvAsvsgdar 65 
                 +   ++ +++++ +++ e+v+ ++ +++ ++i+ a+rk+  +s++a+
  EHU01580.1 204 EIGLMVRQQKAMMESIYEGVIVINEHLQIEVINQAARKLLGLSQSAE 250
                 55667788899999*****************************9987 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.5
                 -----------------------..--HHH CS
  AAA_lid_10  26 aeeekkqklPenvkkvrlkisdd..aieia 53 
                 +e ++++ +P++  +v  k+s+   +ie+a
  EHU01580.1 435 IEATQRAPMPHEPVEVLIKLSARelIIEVA 464
                 456677788888888777776542256655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4003.55
//
Query:       EHU01581.1  [L=193]
Description: citrate carrier protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-21   76.4   0.7    2.1e-21   75.7   0.7    1.4  1  RcnB      Nickel/cobalt transporter regulator
    1.7e-19   69.8   0.8    2.4e-19   69.3   0.8    1.2  1  2HCT      2-hydroxycarboxylate transporter family


Domain annotation for each model (and alignments):
>> RcnB  Nickel/cobalt transporter regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.7   2.3e-25   2.1e-21       1      51 []     135     185 ..     135     185 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 2.3e-25
        RcnB   1 GdrlppeyrgrryvvdDwrryhLpaPprGyrWvriggdyvLvaiatGvIas 51 
                 G ++p+ey g+ry++dDwr+++L++Pp+G++W  i+g+yvL+a atG+I+s
  EHU01581.1 135 GRPVPREYCGDRYRIDDWRERGLREPPEGQHWADIDGNYVLIAAATGIITS 185
                 889**********************************************85 PP

>> 2HCT  2-hydroxycarboxylate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.8   2.7e-23   2.4e-19       2      91 ..      36     124 ..      35     130 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 2.7e-23
        2HCT   2 lglplplfllllavlllalltgklpkdligalavllvlGillgeiGkriPilksylGGgailallvpsllvylgllpeevvkavttfmke 91 
                 +++plplf+l+ ++++l  l gkl +d+++++a+l+++G+ +ge Gkr+P++ + lG++ai+a+++ps+lvy+gllp+ vv+++t+f+++
  EHU01581.1  36 GIIPLPLFVLAGVLIALDCLSGKLASDIVVMVATLAFFGFACGEFGKRLPVVGR-LGAAAICATFIPSALVYYGLLPDIVVTSTTQFHDR 124
                 789**********8888888**********************************.********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1558.41
//
Query:       EHU01582.1  [L=218]
Description: HAD superfamily hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-27   97.0   0.0    1.7e-27   96.8   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
    7.6e-05   22.3   0.0     0.0076   15.8   0.0    2.2  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
  ------ inclusion threshold ------
      0.024   15.1   0.0      0.056   13.9   0.0    1.7  1  MULE         MULE transposase domain


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   2.9e-31   1.7e-27       1     201 [.       7     209 ..       7     213 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 2.9e-31
                  EEEEIIIIIS-TTS---.HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTT.. CS
  Hydrolase_3   1 ialDlDGTLlnsdkkis.ektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkenn.. 95 
                  +a+D+DGT+l+++k+++  +  +  ++l++++i +v+A+G+++ ++++++ e+  + +++a NGali   +++ l+   +s++d++ ++++lk+ +  
   EHU01582.1   7 VAVDMDGTFLDDKKQYNrARFLACYHQLSQRNIRFVVASGNQYHQLRSFFPEIASEIAFVAENGALI-IDRDEELFCGAFSRSDIDAVLDTLKNGHyp 103
                  699************887999**********************************************.**************************999* PP

                  .CEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHH CS
  Hydrolase_3  96 .veillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtal 192
                   +++ll++ +++y+ +  ++e+   + +++ +  + i++ +e  d+ i k+ +  +++ ++ l +++ ++ +  ++ tss++g+++++ +g +K+++l
   EHU01582.1 104 dLRYLLCGRNSAYYFEG-MDETWLVKMRHYCHRLKPIRTLDEVADDRILKFALNLSDDYVEPLMADIGRLHAGSAAATSSGHGSVDLIVPGQHKANGL 200
                  *****************.8888888888888888889999999999***************************99*********************** PP

                  HHHHHHCT- CS
  Hydrolase_3 193 kklakelni 201
                  + la++++i
   EHU01582.1 201 NLLAQRWDI 209
                  ******998 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-06    0.0076       3      52 ..       5      55 ..       3      61 .. 0.89
   2 !    4.7   0.0    0.0031        19     147     181 ..     177     211 ..     115     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-06
                EEEEE-TBTTTB..S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHH CS
        S6PP  3 lllvsdLDntlv.dgdnealarlnelleaeerkdvllvfaTGRsldsakel 52
                ++++ d+D+t++ d+++ + ar+ ++ ++ +++++++v+a+G ++++ ++ 
  EHU01582.1  5 KMVAVDMDGTFLdDKKQYNRARFLACYHQLSQRNIRFVVASGNQYHQLRSF 55
                6899********88888899***********************99988765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0031
                 EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--G CS
        S6PP 147 vkviyssgkdlDvlPkraskgeAlryLakklelel 181
                 +    s +  +D++  +  k++ l+ La+++++ +
  EHU01582.1 177 AAATSSGHGSVDLIVPGQHKANGLNLLAQRWDIFP 211
                 4445688899*********************9865 PP

>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.4e-06     0.056       2      73 ..       9      80 ..       8     115 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.4e-06
        MULE  2 vvlDgTyktnkyklplltvvgvddngqlvplafalveseneesyewllqelleevsgqrspkviitDkekal 73
                v +DgT++  k ++  + ++++ ++ +  ++ f++ +  + ++ + ++ e+++e+    ++  +i+D++++l
  EHU01582.1  9 VDMDGTFLDDKKQYNRARFLACYHQLSQRNIRFVVASGNQYHQLRSFFPEIASEIAFVAENGALIIDRDEEL 80
                569***************************************************9999**********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:01.10
# Mc/sec: 598.32
//
Query:       EHU01583.1  [L=68]
Description: putative phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-17   63.0   0.0      4e-17   62.8   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.093   12.2   0.0       0.12   11.9   0.0    1.2  1  S6PP         Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   4.5e-21     4e-17     207     255 .]       2      50 ..       1      50 [. 0.98

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 4.5e-21
                  EEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 207 iafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  +afGDg ND+eML+++g+++Am+na ++vk+ A++  + nne+GV++++
   EHU01583.1   2 LAFGDGGNDLEMLQQSGYSFAMRNAPQRVKQTARFLAPGNNEEGVLQVI 50 
                  7*********************************************997 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.3e-05      0.12     185     239 ..       2      47 ..       1      53 [. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.3e-05
                 EEEE-SGGGHHHHTSSSEEEE-TT--HHHHHHHHHH--TTE..EE-SS-THHHHH CS
        S6PP 185 lvcGdsgnDeellignvlgVvVgnaqeellqwllenakeneriylaeercaaGil 239
                 l  Gd gnD e+l+++ ++  ++na +  +   +++a      +la ++  +G+l
  EHU01583.1   2 LAFGDGGNDLEMLQQSGYSFAMRNAPQR-V---KQTA-----RFLAPGNNEEGVL 47 
                 788*********************9888.2...2222.....2455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 512.41
//
Query:       EHU01584.1  [L=382]
Description: iron-containing alcohol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-73  246.3   0.2      5e-73  246.0   0.2    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    2.4e-13   50.4   0.0    3.7e-06   26.8   0.1    2.1  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   0.2   5.6e-77     5e-73       3     318 ..      13     331 ..      11     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 246.0 bits;  conditional E-value: 5.6e-77
                 EEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHHH CS
      Fe-ADH   3 rivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKaia 101
                 +++fg+g+l++l  ll++   +  l+++++++l + ++++++++ l+++ +    ++ v+++ + ++++  + + r + +d v+a+GGGsv+D+AKa +
  EHU01584.1  13 HTLFGRGSLSKLIPLLAAQP-QATLLFCGRSFL-QGEAYARIKTTLNDHIVG---YEIVSHEASPADIDGWVTRWRGH-VDRVVAIGGGSVLDAAKAFS 105
                 689*************9997.8*********99.888*********555555...55699***************997.9******************* PP

                 HHTT.....................--EEEEESS-S-S-TT-SEEEEE.-TT.SEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 102 lllanp.evedyl.gegkakkkka.lpliaiPTtaGtGsevtplavitdeee.geklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEay 196
                 +++++p ++++yl ++g +  ++  lplia+PTtaGtGsevt++av+td+++ + k s+++p ++P++ai+Dp+l+ ++P  v+a++g+Da++h +Eay
  EHU01584.1 106 AMIQHPlSTARYLeKVGDTAVTPVtLPLIAVPTTAGTGSEVTQNAVVTDQQDiQIKASLRHPVFVPQVAILDPDLLKGAPDTVLATCGIDAFTHLFEAY 204
                 *****97799999755555555556***********************988888********************************************* PP

                 HHHT---TTSSB--HHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HH CS
      Fe-ADH 197 vskkanplsdalaleairliaknleravadge.dleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfnaeaaperla 294
                 +s k n ++++++l+++r ++++ + + +  e    are+m++as+l+g+++s+aglg+ H++a +lga+   +hg++++ ll   l+  a +++ + +
  EHU01584.1 205 LSGKGNHFTRQMTLSGLRQFIQAWPALNQLDEtGDRAREAMMMASWLGGVSLSTAGLGVIHGIAGELGAIKPFHHGEVCGRLLFTFLDHLAVSQHPEQR 303
                 **************************998866478**********************************77****************999966654444 PP

                 HHHHT...........T--HHHHHHHHH CS
      Fe-ADH 295 qlaralgge....sdeeaaeeliealre 318
                 ql   + ++     +++ a++l ++l++
  EHU01584.1 304 QLMADMHQQlfgtHTDSPARDLKAWLQR 331
                 4444444444554555666666666554 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-08   0.00015       3     101 ..      17     111 ..      15     114 .. 0.88
   2 !   26.8   0.1   4.2e-10   3.7e-06      99     250 .]     130     284 ..     124     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-08
    Fe-ADH_2   3 gegaleklgellkelelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvp 101
                 g+g l+kl  ll+ +   ++l +  +  +  a  +++ +l+++ +  e+v+   +ea+  ++   v++ r  ++d vva+GgG+++D+ak  sa  + p
  EHU01584.1  17 GRGSLSKLIPLLAAQPQATLLFCGRSFLQGEAYARIKTTLNDHIVGYEIVS---HEASPADIDGWVTRWR-GHVDRVVAIGGGSVLDAAKAFSAMIQHP 111
                 6788889999999999999999999999999************99999886...7888888989999998.99******************99877665 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 4.2e-10
    Fe-ADH_2  99 nvpyvsvpTaaSvDGfaspgaslvvd...gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaa 193
                  +p+++vpT+a   +    +a ++ +   + k ++ ++  +P   i+D d+l+ AP+  la    D+   +   + +  +n+++++++++  +++ +a 
  EHU01584.1 130 TLPLIAVPTTAGTGSEVTQNAVVTDQqdiQIKASLrHPVFVPQVAILDPDLLKGAPDTVLATCGIDAFTHLFEAYLSGKGNHFTRQMTLSGLRQFIQAW 228
                 689*********99999999999877667789999999*******************99998888******9999999999*************99999 PP

    Fe-ADH_2 194 eklve.dkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHGeqVG 250
                  +l + d+  ++a e++++a+ l+g++ s ++ G  H i+  l +++  +  HGe +G
  EHU01584.1 229 PALNQlDETGDRAREAMMMASWLGGVSLSTAGLGVIHGIAGELGAIK--PFHHGEVCG 284
                 9998878889**********************************999..999**9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3210.28
//
Query:       EHU01585.1  [L=438]
Description: gluconate transporter, high-affinity GNT I system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-181  602.0  40.3   6.5e-181  601.8  40.3    1.0  1  GntP_permease    GntP family permease
    2.8e-26   92.4  41.2    3.7e-26   92.0  41.2    1.1  1  CitMHS           Citrate transporter
  ------ inclusion threshold ------
        9.6    6.4  27.0       0.67   10.1   9.4    3.6  3  Na_H_antiport_2  Na+-H+ antiporter family


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  601.8  40.3  1.1e-184  6.5e-181       1     439 [.       1     436 [.       1     437 [. 0.99

  Alignments for each domain:
  == domain 1  score: 601.8 bits;  conditional E-value: 1.1e-184
  GntP_permease   1 lpllivligvilllllviklklnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkk 96 
                    +pll+v+igv+lllll+i++kln+f+aL+lv+l+vg+++Gmp++kv+ si++G+GgtlG la+i+g+GamlGkll+d+G+a+ria+tli+k+g+++
     EHU01585.1   1 MPLLYVAIGVALLLLLMIRFKLNGFIALILVALAVGVMQGMPVNKVIISIKNGVGGTLGGLALIMGFGAMLGKLLADCGGAQRIATTLIAKFGTRH 96 
                    79********************************************************************************************** PP

  GntP_permease  97 vqwalvlagfivgialFfevglvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptviiagpl 192
                    +qwalvl+gfivg+alF+evg+vl++plvf++a++a+++ll +g+p++aal+v+hg+lpPhPgp+a+a+l++ad+Gk+ll+G++++iptvi+agp+
     EHU01585.1  97 IQWALVLTGFIVGFALFYEVGFVLMLPLVFSVAASARVPLLFVGVPMAAALSVTHGFLPPHPGPTAIATLFNADMGKTLLFGTLLGIPTVILAGPV 192
                    ************************************************************************************************ PP

  GntP_permease 193 lkkflkevvkeeeelaeeaeeksreekelPsfglslltillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlglrrgksik 288
                    +++flk + k  +e    ++ k++ e e+P+fg+s++t+l+Pv+lm+++++ae++lpk++a+l + ef G+p++a lia+l+ai+t+gl+rg+s++
     EHU01585.1 193 YARFLKGIDKPIPE--GLYNPKTFTEAEMPGFGVSVWTSLVPVILMALRAVAEMVLPKGHALLPYAEFFGDPIMATLIAVLIAIFTFGLNRGRSME 286
                    ***********999..789***************************************************************************** PP

  GntP_permease 289 kvldileealksiaiilliigaGGafkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlpgvnlallvl 384
                    +v+d+l++++k ia++lliig+GGafkqvlvds v+k++a +++ ++lsp+++a+ +aa+lrialGsatVaa+ta+g+vap+ia+  g++++l+v+
     EHU01585.1 287 QVMDTLSDSIKIIAMMLLIIGGGGAFKQVLVDSCVDKYIAGMMHATNLSPLFMAWSIAAVLRIALGSATVAAITAGGIVAPLIATS-GASPELMVI 381
                    ************************************************************************************99.********* PP

  GntP_permease 385 aigaGslilshvnDagFWlvkeylgltvketlktwtvletilsvvgliivlllsl 439
                    a+g+Gs+i+shvnD+gFWl+key++lt+ etl++w+ leti+sv+gl+ +llls 
     EHU01585.1 382 AVGSGSVIFSHVNDPGFWLFKEYFNLTIGETLRSWSALETIISVCGLVGCLLLSY 436
                    ***************************************************9986 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0  41.2   6.2e-30   3.7e-26       3     300 .]      14     384 ..      12     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 6.2e-30
                 xxxxxx......xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
      CitMHS   3 llilek......lrldvvallvlvll.......vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsa 87 
                 ll++ +      ++l++val v+v+        +++i+  + g   +++l+++++ ++g++l+++G+++r+a++l+ ++g+  + + ++lvl+ +++ +
  EHU01585.1  14 LLLMIRfklngfIALILVALAVGVMQgmpvnkvIISIKNGVGGTLGGLALIMGFGAMLGKLLADCGGAQRIATTLIAKFGT--RhIQWALVLTGFIV-G 109
                 5555556677888899999988888799999999999999999999999*******************************9..447***********.9 PP

                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx..................... RF
      CitMHS  88 fvsn.dgvvlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa........arpglslpnllllal..................... 156
                 f+ +  + +++m+p+v+s+a++ ++ p+l+   +++++++  ++t+ + p+++++        a++g++l+++ ll++                     
  EHU01585.1 110 FALFyEVGFVLMLPLVFSVAAS-ARVPLLF---VGVPMAAALSVTHGFLPPHPGPtaiatlfnADMGKTLLFGTLLGIptvilagpvyarflkgidkpi 204
                 99898999*************7.9999999...******************************************888666666666677666667777 PP

                 .....................xxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 157 .....................llvgllplvllfmfgvalalpvnap..............................kvkkqkaiieaiarsllpvatil 204
                                      + + l+p++l+++ +va +++++ +                              +++++++++++++ s++ +a++l
  EHU01585.1 205 peglynpktfteaempgfgvsVWTSLVPVILMALRAVAEMVLPKGHallpyaeffgdpimatliavliaiftfglnRGRSMEQVMDTLSDSIKIIAMML 303
                 77777777777777766666666667*******99999999999999**********************************************888888 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 205 llaykkveWsvlllfaGvfllvgaleqtGilealadllga...ggplvalalvlglial.lsafisnvavaalmapialgmapalgllspsplalalav 299
                             l+++G + + ++l ++ + +++a++++a   +++++     ++ ia+ l++++++++vaa++a ++++  p ++++ +sp ++++av
  EHU01585.1 304 ------------LIIGGGGAFKQVLVDSCVDKYIAGMMHAtnlSPLFM-----AWSIAAvLRIALGSATVAAITAGGIVA--PLIATSGASPELMVIAV 383
                 ............677777777*****************5554335555.....7888888********************..73333578888999998 PP

                 x RF
      CitMHS 300 g 300
                 g
  EHU01585.1 384 G 384
                 7 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.4   0.00011      0.67       5      58 ..       6      63 ..       4      92 .. 0.71
   2 ?    5.8   3.0    0.0025        15      21      83 ..     267     329 ..     263     334 .. 0.86
   3 ?   -0.9   0.5       0.3   1.8e+03      17      37 ..     348     368 ..     335     382 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
  Na_H_antiport_2  5 iavlvmlvLsl.lr..vnvvlallisalvgGlvgglsleetieafasGlgggae.vAl 58
                     +a+ v+l+L l +r  +n  +al++ al+ G++ g++++++i  +++G+gg     Al
       EHU01585.1  6 VAIGVALLLLLmIRfkLNGFIALILVALAVGVMQGMPVNKVIISIKNGVGGTLGgLAL 63
                     4555544444313433999*****************************9987531444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0025
  Na_H_antiport_2  21 vlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltdllvkkv 83 
                      ++a+li+ ++ Gl  g s+e++++++++ ++  a + l     Gaf  ++  s + ++++ ++
       EHU01585.1 267 LIAVLIAIFTFGLNRGRSMEQVMDTLSDSIKIIAMMLLIIGGGGAFKQVLVDSCVDKYIAGMM 329
                      688999999999999999999999999999998888888888899*99999999999988765 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.3
  Na_H_antiport_2  17 rvnvvlallisalvgGlvggl 37 
                      r+ +  a + +  +gG+v+ l
       EHU01585.1 348 RIALGSATVAAITAGGIVAPL 368
                      444333444444455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3434.94
//
Query:       EHU01586.1  [L=81]
Description: hypothetical protein CKS_3715 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 666.64
//
Query:       EHU01587.1  [L=187]
Description: lipid A palmitoyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-66  220.0   5.5    9.2e-66  219.7   5.5    1.1  1  PagP      Antimicrobial peptide resistance and lipid A acylat


Domain annotation for each model (and alignments):
>> PagP  Antimicrobial peptide resistance and lipid A acylation protein PagP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.7   5.5   5.1e-70   9.2e-66       1     145 []      38     184 ..      38     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 219.7 bits;  conditional E-value: 5.1e-70
        PagP   1 rvsqvweeges.dlylplytwHnrltYdkekideynekawGlGlgkslydekgnwhglyalafkDShkklepivGYayekvwkiak.edlrlGlGytvg 97 
                 +v+q+we+++s dly+p++twHnr+tYd+e+id+yne++wG+G+g s+ydekgnwhglya+afkDS++++ep++GY++e++w++ + + +++GlGytvg
  EHU01587.1  38 NVQQTWEQPQSiDLYVPAITWHNRWTYDSEHIDRYNERPWGAGVGVSRYDEKGNWHGLYAMAFKDSFNHWEPFTGYGWEATWRPLTnQAFHYGLGYTVG 136
                 699*******99***********************************************************************988799********** PP

        PagP  98 vtaRsdykyiPlPlalPlasieykklslqatyipgtknnGnvlflflr 145
                 vtaR+++ y P+P++lPlas++y  +++q+tyipgt+nnGnv+f+++r
  EHU01587.1 137 VTARDNWGYYPIPAILPLASVGYGPVNFQMTYIPGTYNNGNVYFAWVR 184
                 **********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1588.36
//
Query:       EHU01588.1  [L=69]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-33  114.7   0.5    1.4e-33  114.6   0.5    1.0  1  CSD       'Cold-shock' DNA-binding domain
    1.9e-05   24.3   0.4    3.7e-05   23.3   0.4    1.6  1  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
      0.098   12.6   0.0       0.13   12.2   0.0    1.2  1  CusF_Ec   Copper binding periplasmic protein CusF
       0.11   12.8   0.0       0.12   12.7   0.0    1.2  1  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.5   3.1e-37   1.4e-33       2      65 ..       5      68 ..       4      69 .] 0.97

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 3.1e-37
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +G Vkwfn++kgfGFIt+edg+kdvFvH+saiq++gf++L+egq+VeFe+++g kgp+AanV+ 
  EHU01588.1  5 KGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITDGAKGPSAANVIS 68
                79************************************************************85 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.4   8.2e-09   3.7e-05       7      29 ..      14      36 ..      11      66 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.2e-09
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF+ p++g++D+f++ + +
  EHU01588.1 14 SKGFGFITPEDGSKDVFVHFSAI 36
                79***************876554 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.13      36      59 ..      37      60 ..      31      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
                TTSEESS-STT-EEEEEEEEETTC CS
     CusF_Ec 36 dpallaglkaGdkVrFefekrdgg 59
                ++  +++l++G++V+Fe+++ ++g
  EHU01588.1 37 QSNGFKTLAEGQRVEFEITDGAKG 60
                5566799*************9987 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05      0.12      18      63 ..      17      57 ..       2      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
                TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEE CS
          S1 18 gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkv 63
                +G++   ++  ++fv+ s + ++     + ++l +G++v++++++ 
  EHU01588.1 17 FGFITPEDGSKDVFVHFSAIQSN-----GFKTLAEGQRVEFEITDG 57
                666666667899*********99.....***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 583.71
//
Query:       EHU01589.1  [L=265]
Description: putative hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-41  140.1   0.1    8.9e-41  139.9   0.1    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.1     5e-45   8.9e-41       2     260 ..       3     245 ..       2     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 5e-45
                   EEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS.SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEE CS
  CN_hydrolase   2 vAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy.keeahfleaAeaglgetlallaalarkngiavvigliereltngklqaynt 97 
                   vA+ Q    + + ++n q + ++ a+A +  adL+vlPE+ +     +++ ++eaA+ ++g++l +l  +++ +  + v+g+     ++ k+  +n 
    EHU01589.1   3 VALGQFVV-KREWQENAQACINMMAQAREASADLLVLPEAVLATDmTNPDWIREAAQPLNGPFLTQLLTASQGQTLTTVFGMHVPG-DSHKV--FNV 95 
                   55566555.478899*************99**********99866789999999999*******************9999988775.66677..777 PP

                   EEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SS.S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHH CS
  CN_hydrolase  98 avlldldgklvgkyrKlhLfpgeprpptaverelfepgdg.ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwel 193
                    v++ +dgk++++yrKlhL    ++  +  e+  +e+g++  p + +++ ++G++ Cy+ +fpe +r l l+ga++lv    +a+v + + + +w+l
    EHU01589.1  96 LVVI-RDGKILAEYRKLHL----YDAFSMQESARVEAGQDvPPLVPVAGMNVGLMTCYDVRFPEMARRLVLDGADVLVV--PSAWVRGPLKEMHWDL 185
                   7776.899999*******8....789**************7777777777*****************************..77************** PP

                   HHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 194 lgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                   l+r+ralen c+v+a+ ++g+        +g+S++idp G  ++++ e    +++a++d ++++a+r
    EHU01589.1 186 LTRTRALENTCYVLAVGECGA------RNIGNSMVIDPLGVPISRAAESP-ALIVADLDPQRIAAAR 245
                   *********************......9********************99.5***********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2251.33
//
Query:       EHU01590.1  [L=67]
Description: component of Sec-independent translocase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-13   48.5   0.1    4.3e-13   48.4   0.1    1.1  1  MttA_Hcf106  mttA/Hcf106 family


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   2.4e-17   4.3e-13       1      46 [.       4      49 ..       4      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.4e-17
                 S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH- CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleee 46
                 +++ +lliI+  ++llFG +kL  ++  LG++++ Fkka+k++++ 
   EHU01590.1  4 ISIAKLLIIGALIVLLFGTNKLRSLGGDLGSAIKGFKKAMKDEDSS 49
                 7999*************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 491.76
//
Query:       EHU01591.1  [L=321]
Description: lipoate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-15   56.2   0.0    9.9e-15   55.3   0.0    1.5  1  Radical_SAM  Radical SAM superfamily
    2.3e-07   31.2   0.0    1.5e-06   28.6   0.0    2.0  2  LIAS_N       N-terminal domain of lipoyl synthase of Radical_


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.1e-18   9.9e-15       4     166 ..      91     251 ..      88     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.1e-18
                  ESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHG.HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla....vpgiritvetngtlpd.eekler 96 
                  +  C++rC+fC++ +     gr+   +  e  ++++ + a++  ++v++++ + ++ +d     ++ +  a    +p+i+i   ++ ++ + ++ le 
   EHU01591.1  91 GAICTRRCPFCDVAH-----GRPNAPDANEPGKLAQTI-ADMALRYVVITSVDRDDLRDGGAQHFADCITAirekSPNIKIETLVPDFRGRmDRALEI 182
                  678***********8.....899999999999999999.7888**************99999999999999999999999999999999998888888 PP

                  HHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET..EEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  97 llelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr..vvdrivglpGendeeleellel 166
                  l   ++d+++++le +    +++   +g ++e  l++le+++ea  ++  ++++++++ Ge+ +e+ e++++
   EHU01591.1 183 LTATPPDVFNHNLENVPRV-YRQVR-PGANYEWSLKLLERFKEA-HPDvpTKSGLMVGLGETNAEIIEVMRD 251
                  88888************94.55555.******************.88889******************9987 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.7e-10   1.5e-06      64     108 .]      28      73 ..      11      73 .. 0.86
   2 ?   -0.0   0.0      0.13   1.2e+03      28      77 ..     217     266 ..     200     275 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.7e-10
      LIAS_N  64 krekgerlrLPswlktkiPlGkn.ynkikndlreLnLhtvCeeaRC 108
                   +++e lr P+w+k k+P   +  + ik+ +r+  Lh vCeea C
  EHU01591.1  28 AVDRQEILRKPEWMKIKLPADSSrIQGIKAAMRKNGLHSVCEEASC 73 
                 4566789************98762788*****************99 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.13
      LIAS_N  28 ltdekkelleeGPdlqDFvsgdkedkseweeykgnlkrekgerlrLPswl 77 
                 l++++ke   + P+ +  + g  e++ e  e+  +l+r+    l L ++l
  EHU01591.1 217 LLERFKEAHPDVPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYL 266
                 55666777777777777777777777777777777777766677776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2529.94
//
Query:       EHU01592.1  [L=218]
Description: lipoyl-protein ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-06   27.0   0.0    8.2e-06   25.8   0.0    1.6  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.5e-10   8.2e-06      24     131 .]      62     159 ..      54     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.5e-10
                    T-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH......HHTT-TTEEEE.TTTEEEETTEEEEEEEEEEEET CS
  BPL_LplA_LipB  24 gglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealgyrdskpgiegipvfik.wpnDlyvngrKlaGiavtstrg 118
                    g++ vv+  +gG++++h+p++ ++y l++ ++ kt   r l     + v+avl++           g+ ++++     +yv+ +K+ + + + ++g
     EHU01592.1  62 GSIPVVQSDRGGQVTYHGPGQQIMYVLIDVKRRKTGV-RQLVTALEETVIAVLDSF----------GVAARARaDAPGVYVGEEKICSLGLRIRKG 146
                    67889************************98864443.333333455555555555..........333333322224699999999999999999 PP

                    TS-EEEEEEEEEE CS
  BPL_LplA_LipB 119 ktlhhivigvgvn 131
                       h+++++v+++
     EHU01592.1 147 CSFHGLALNVDMD 159
                    9999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1581.06
//
Query:       EHU01593.1  [L=87]
Description: uncharacterized DUF493 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-29  100.6   0.0    6.1e-29  100.4   0.0    1.0  1  DUF493    Protein of unknown function (DUF493)
  ------ inclusion threshold ------
      0.078   13.6   0.0        0.1   13.3   0.0    1.2  1  MBG_2     MBG domain (YGX type)


Domain annotation for each model (and alignments):
>> DUF493  Protein of unknown function (DUF493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   6.8e-33   6.1e-29       2      84 .]       7      87 .]       6      87 .] 0.98

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 6.8e-33
      DUF493  2 elieFPcdfpikviGkaeedfaqavvevverhap.dfdeetvevresskgkYlSvtvtvrveseeqldalyqeLkahprvkmvL 84
                el+eFP+ f++kv+G a++++++ v+evv+rhap d+++e    ++sskg+Y+Sv+vt+ +++ eq+++ly+eL++++ v+mvL
  EHU01593.1  7 ELLEFPTPFTYKVMGLAQPELVDLVLEVVQRHAPgDYSPEV---KPSSKGNYHSVNVTINATHIEQVETLYEELGKIEIVRMVL 87
                79***********************************9999...***************************************8 PP

>> MBG_2  MBG domain (YGX type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.1e-05       0.1      17      63 ..      12      56 ..       3      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
       MBG_2 17 Pe.ltytvsGlvngDtlssltgtlsrtagenvGtYaitasglsssNYt 63
                P+ +ty+v Gl + + ++   + l++ +  + G+Y+ +++  s  NY+
  EHU01593.1 12 PTpFTYKVMGLAQPELVD---LVLEVVQRHAPGDYSPEVKPSSKGNYH 56
                555**********99999...**************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 709.43
//
Query:       EHU01594.1  [L=403]
Description: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-101  337.9   0.2   3.8e-101  337.5   0.2    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    6.5e-26   90.4   0.0    1.2e-25   89.6   0.0    1.4  1  PBP5_C           Penicillin-binding protein 5, C-terminal dom
    4.2e-09   36.3   0.0    5.9e-09   35.8   0.0    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
     0.0041   16.4   0.4      0.031   13.5   0.1    2.0  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.5   0.2  8.5e-105  3.8e-101       5     240 ..      39     272 ..      35     273 .. 0.98

  Alignments for each domain:
  == domain 1  score: 337.5 bits;  conditional E-value: 8.5e-105
                    S---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS..GTTSSTTS-TTT-EEEHHHHHH CS
  Peptidase_S11   5 asepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn..nkevsniflkkgskvsvkdLle 98 
                    +  p +i+a++++l+d+n+GkvL+eknad ++++ASltK+mT+y++++a+k+gk+++dd+vt+++da+a+gn  +k++s +flk+g++v v++L +
     EHU01594.1  39 PGVP-DIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDMVTVGQDAWATGNpvFKGSSLMFLKPGDRVPVSQLTR 133
                    5667.9****************************************************************************************** PP

                    HHHCC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHHHHHHHHGGGESEEEETTECTEEEES CS
  Peptidase_S11  99 gllvssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkdlpeelkitkeksltfngikklnykn 194
                    g++++sgNdA+va+A+++aGs++aFv +Mn+++k+lGl+nt+f++++GLd+e+q+ssArd+a++++al++d+pee++++kek++tfn   +++++n
     EHU01594.1 134 GIVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYAVYKEKEFTFN---NIRQMN 226
                    **************************************************************************************9...****** PP

                    STGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 195 knkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    +n+ll++ +l vdg+ktG+t +Ag++lva+a+e+qmrlis v++ +
     EHU01594.1 227 RNGLLWDTSLSVDGIKTGHTAAAGYNLVASATEGQMRLISAVMGGH 272
                    *******************************************975 PP

>> PBP5_C  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   2.6e-29   1.2e-25       1      90 [.     292     382 ..     292     383 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 2.6e-29
                 EEEEEEEXTTCESEEEEEESSSSSEEEEEESSXEEEEEETTHCCTEEEEEEE.SSSEESGBGTTSEEEEEEEEETTEEEEEEEEEESSXBX CS
      PBP5_C   1 FetkklykkgkvvktvsvlkgkekeVplvakediyvtvkkgekkklkakvel.kksleapikkGqkvGklkvyldgkliakvplvakedve 90 
                 Fet+ ++k+gk++ + +v+ g+ + V+l++++d y+t+++g +k+lka+++l + +l ap+kk+q+vG+++++ldgk+i + plv++++v 
  EHU01594.1 292 FETVAPLKAGKEFASEPVWFGNSDRVQLGVEKDAYLTIPRGRMKDLKASYVLsNTELHAPLKKNQVVGSINFQLDGKTIDQRPLVVLNEVS 382
                 9****************************************************************************************97 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.3e-12   5.9e-09       3     145 ..      56     206 ..      54     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.3e-12
                      TTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH......HTSSSTSGGGST.TSEEEHHHHHHHHHHTT-HHHHHHHH CS
  Beta-lactamase2   3 tgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaed......ivggsgilqklp.gktlslrdlltlmiavSDNtAtnlLi 88 
                      +g++l + nad +   aS+ K +  +   +av++gk+  d+ +t+ +++      + +gs  + +l+ g+++++++l +  + +S N A  +  
       EHU01594.1  56 SGKVLaEKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDMVTVGQDAwatgnpVFKGSSLM-FLKpGDRVPVSQLTRGIVLQSGNDACVAMA 148
                      56666477****************9999*********************65555433455444.566266************************ PP

                      HHH.T.HHH....HHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTS CS
  Beta-lactamase2  89 drl.g.lea....vnawlkelglretrlrrklpdleaadkdkrntttardlarllealargel 145
                      d++ g ++a    +n++ k+lgl++t++++ +++l+a    +  +++ard+a + +al+r+ +
       EHU01594.1 149 DYVaGsQDAfvglMNNYVKALGLQNTHFQT-VHGLDA----EGQYSSARDMALIGQALIRDVP 206
                      ***85566644447***************5.567765....899**************99744 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1     7e-06     0.031      18      80 ..      50     102 ..      38     133 .. 0.75
   2 ?    0.4   0.0     0.066   2.9e+02     216     232 ..     176     198 ..     136     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7e-06
                     EEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG...G CS
  Beta-lactamase  18 avavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV...s 80 
                     ++++++ gkv++               +ad + + aS+tK++t+ ++ q v +Gk+  dd V   +
      EHU01594.1  50 VLIDYNSGKVLA-------------EKNADARRDPASLTKMMTSYVIGQAVKAGKIHQDDMVtvgQ 102
                     566777777773.............4468999999*************************995553 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.066
                     C......TTTBEEEEHHHHHHHH CS
  Beta-lactamase 216 e......gagglistardlarfl 232
                             a g +s+ard+a  +
      EHU01594.1 176 FqtvhglDAEGQYSSARDMALIG 198
                     044455557799*******9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3353.38
//
Query:       EHU01595.1  [L=378]
Description: rare lipoprotein A precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-24   83.4   0.0    1.8e-23   82.6   0.0    1.4  1  DPBB_1    Lytic transglycolase
    8.7e-16   58.1   2.5    1.8e-15   57.1   2.5    1.5  1  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0     2e-27   1.8e-23       2      83 .]      77     166 ..      76     166 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 2e-27
                 EEEEEEE-.CCC.....-TTSSB--TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEEEE CS
      DPBB_1   2 aagsasly.kdg.....tacGecyevkcltaahktlplgtycrv..ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipVky 83 
                 ++g a++y + +     ta Ge +++ +ltaah+tlpl++y+rv  l+ g++++V+++Drgp++pgr+iDLS+aA  +l+++++  ++V y
  EHU01595.1  77 EVGLAAWYgD-EaqgsrTAIGEAFDPDALTAAHPTLPLPSYVRVtnLAnGRQIVVRVNDRGPYTPGRIIDLSRAAGDRLNISNNTRVRVDY 166
                 5799****62.446799***************************99778**************************************9987 PP

>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   2.5     2e-19   1.8e-15       3      76 .]     303     374 ..     301     374 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2e-19
                 TBB--BS-EES-HHHHHHHHHHCCHH.T--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS--B-B CS
        SPOR   3 ggytvQvgafsseanAerlaakLrak.gfaaavavvsgggglyrVrvGpfasreeAqaalkkLkaaagisafvvr 76 
                 +gy vQv a ++ a+A++l++ Lr++ g +   av + g+++yrV++G++++r+eA a++++L  + g+sa++v+
  EHU01595.1 303 SGYVVQVSAINDAARARQLLSSLRQRfGVPG--AVENAGNNVYRVQLGGYKTRAEAVALQQRLS-REGQSAAFVT 374
                 79************************55555..*******************************.7899998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3041.24
//
Query:       EHU01596.1  [L=370]
Description: cell wall shape-determining protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-124  415.5  26.6     2e-124  415.3  26.6    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.3  26.6  1.1e-128    2e-124       4     358 ..      21     364 ..      17     365 .. 0.97

  Alignments for each domain:
  == domain 1  score: 415.3 bits;  conditional E-value: 1.1e-128
  FTSW_RODA_SPOVE   4 lllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvplgssanGAkrWir 97 
                      +l++l+ll+ ++ ++i+sas  ++  +++       r+l ++++gl+v+++l+++p++++e +a++l+ii+++lL++v+  +g+ ++GA+rW++
       EHU01596.1  21 MLIILALLT-YSAIVIWSASG-QDPGMME-------RKLGQIAMGLVVMLVLAQVPPRVYEGWAPYLYIICVILLIAVDA-FGQISKGAQRWLD 104
                      344455555.99999999999.6666776.......********************************************.************* PP

  FTSW_RODA_SPOVE  98 lggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklilaivlalilvia 191
                      lg++++qPsE++kia+ l++A+++++  +++ + l++++i+lv+++l+++l+++qpdlgt++l+++++l+vlflsg+s+kli ++vl+++++i+
       EHU01596.1 105 LGFVRFQPSEIAKIAVPLMVARFINR--DVCPPTLKNTAIALVLIFLPTLLVAAQPDLGTSILIAASGLFVLFLSGMSWKLIGIAVLLVAAFIP 196
                      **************************..****************************************************************** PP

  FTSW_RODA_SPOVE 192 ivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqq.kleyLPeahtDfIfavigEelGlvGvllllllffllivr 284
                      i++++l++dyq++rv++lldp++dplg+gY++iqs+iAigsGGl GkG+ +++q +le+LPe+htDfIfav++EelGlvGvllll+l++lli+r
       EHU01596.1 197 ILWFFLMHDYQRDRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQsQLEFLPERHTDFIFAVLAEELGLVGVLLLLVLYLLLIMR 290
                      ********************************************************************************************** PP

  FTSW_RODA_SPOVE 285 glriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisreek 358
                      gl +a++a+++fg+++a g++l+++v++f+nigmv+G+lPv+G++lP++SyGGs+l++l++++gi+++i++++k
       EHU01596.1 291 GLIVAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRK 364
                      **********************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2824.20
//
Query:       EHU01597.1  [L=634]
Description: penicillin-binding protein 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-88  296.7   0.0    3.6e-88  295.7   0.0    1.5  2  Transpeptidase  Penicillin binding protein transpeptidase dom
      3e-44  151.5   0.2    4.7e-44  150.9   0.2    1.3  1  PBP_dimer       Penicillin-binding Protein dimerisation domai
  ------ inclusion threshold ------
       0.14   13.0   0.2       0.31   11.9   0.2    1.4  1  ANAPC_CDC26     Anaphase-promoting complex APC subunit CDC26


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.99   5.9e+03     242     254 ..     219     231 ..     215     235 .. 0.80
   2 !  295.7   0.0     6e-92   3.6e-88       2     306 .]     273     610 ..     272     610 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.99
                     -EEEEEEEEECSS CS
  Transpeptidase 242 vagKTGTAevagk 254
                     ++gKTG  ev  +
      EHU01597.1 219 LHGKTGYEEVEVN 231
                     69****9998665 PP

  == domain 2  score: 295.7 bits;  conditional E-value: 6e-92
                     EEEEEETTT-BEEEEEEESE-TTTHHCC.............TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS... CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvg.............kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqs.. 81 
                     a+vv d++tge+lam+s+psydpn +v+             +n+pl+nra+q  y+P+St+K+++a+ al agvi+++++l+d+g+++ +g++  
      EHU01597.1 273 AVVVSDPRTGEILAMVSTPSYDPNLFVDgisskdyrgllndENRPLYNRAIQAAYPPASTVKPYVAVSALSAGVINRNTSLFDPGWWQLPGSEkr 367
                     89****************************************************************************************99999 PP

                     ECTCCCC-SSSSEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSH.........HHHHHHHHTTT...SB CS
  Transpeptidase  82 ikdweqdnkgsegitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkw.........legatisfgiG...lt 163
                     ++dw+++   ++ ++++++le+S +t+f+++a+++g d+l++++ kfg+G +tg+dlp+esaG +ptr w         ++g+ti +giG   +t
      EHU01597.1 368 YRDWKKWG--HGRLNVTKSLEESADTFFYQVAYDMGIDRLSEWMTKFGYGMRTGVDLPQESAGnMPTRDWkmrrfkkpwYQGDTIPVGIGqgyWT 460
                     *******5..8999********************************************************************************* PP

                     B-HHHHHHHHHHHHTTTEEE--BSEEEEEECTT.EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG..TCTTS--EEEEEEEEECSSS CS
  Transpeptidase 164 vtplqlaqayaaiangGklvkPhlvkaivdpdg.vrkvkpkelnklpisketaekvkeglkgvvsrgsgtata..avegykvagKTGTAevagkk 255
                     +tplq+ +a+  ++n+G++  Phl+ a+++  + v++ +p+ +   +i++ ++e  k+g++gv++r++gta++  a++ yk+a+K+GTA+v+g k
      EHU01597.1 461 ATPLQMNKAMMILINDGIIKVPHLLRATREGRTlVPYRQPPSQPIGDIHSGYWEIAKDGMYGVANRPNGTAHKsfADAPYKIAAKSGTAQVFGLK 555
                     ****************************99888************************************************************** PP

                     TTSEEEEEE.......EEEEEEEESTTS-SEEEEEEECTCSSSSSCCHHHHHHHHHHH CS
  Transpeptidase 256 gngkkegak.......iswfvgyapadnpkyavavlieqpkeaaggkaaapiakkile 306
                     +n++++++k       ++ ++++ap+d+p++av++++e+++    g a + ++++il+
      EHU01597.1 556 ENETYNAHKiaerlrdHKLMTAFAPYDKPRVAVTMILENGG---AGPAVGTVMRQILD 610
                     ******999********************************...99999*****9986 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.2   7.8e-48   4.7e-44       3     179 ..      66     240 ..      64     241 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 7.8e-48
                 EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT-E CS
   PBP_dimer   3 papRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGin 101
                  ++RG IyDr+g++LA nr+ y+++++p+k+++ k++  +++l  +le    l+de++e   ++ ++ ++++++++++ ++e +var++ n++++pG++
  EHU01597.1  66 APSRGIIYDRTGTPLALNRTIYQAELVPEKVDDLKQT--LQNLRPVLE----LTDEDIEAFEKERKRSRRFTSIPVKTGLNEVQVARFAVNQYRFPGVE 158
                 699******************************9988..9*******8....********999************************************ PP

                 EEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCH....TCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCEEE CS
   PBP_dimer 102 ievepkRyYpkgelaahvlGyvgkiteeelekykek....gyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrileel 179
                 ++  ++RyYp+g++++hv+Gyv+k++++++++  ++    +y ++  iGk G+E++yE+ L+Gk G+++v+v++rGr++++l
  EHU01597.1 159 VKGYQRRYYPYGQTLTHVVGYVSKVNDRDVARLDKEgkwpNYAATHDIGKLGIEAYYEDLLHGKTGYEEVEVNNRGRVIRQL 240
                 **********************************99******************************************9986 PP

>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   5.2e-05      0.31       8      27 ..     109     128 ..     109     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.2e-05
  ANAPC_CDC26   8 tItLtseDiaeyederqrqk 27 
                  +++Lt eDi+++e er+r +
   EHU01597.1 109 VLELTDEDIEAFEKERKRSR 128
                  689************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4532.99
//
Query:       EHU01598.1  [L=156]
Description: rRNA large subunit methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-47  160.8   0.0    2.7e-47  160.6   0.0    1.0  1  SPOUT_MTase  Predicted SPOUT methyltransferase


Domain annotation for each model (and alignments):
>> SPOUT_MTase  Predicted SPOUT methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   1.5e-51   2.7e-47       1     154 []       1     154 [.       1     154 [. 0.97

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 1.5e-51
                  XEEEEEEES---H.HHHHHHHHHHHHHTTT-EEEEEEE....--..-S-HHHHHHHHHHT--....TT-EEEEE-TTSEE--HHHHHHHHHHHHHHT- CS
  SPOUT_MTase   1 mkikiiavgklkekylkelieeYlkrlkkyakleiielkkekks..ekeeekakekegerilkklkkkayvillderGkelsSeelakkleklaeegk 96 
                  mk++++avg+++++++++++ eYl+r++k +++e++e++   k+  ++++++++ekege++l+++ k++++++ld+ G+ +++ +la++le+++++g+
   EHU01598.1   1 MKLQLVAVGTKMPDWVQTGFMEYLRRFPKDMPFELTEVP-AGKRgkNADIKRILEKEGEAMLAATGKGNRIVTLDIPGQPWETPQLAQQLERWKQDGR 97 
                  9*************************************5.44444599************************************************99 PP

                  .-EEEEE--TT---GGGGGG-SEEEE--SS---HHHHHHHHHHHHHHHHHHHT--XXX CS
  SPOUT_MTase  97 selvfvIGGsdGlseevkkradeklslsklTfpHqlvrvvllEQiYRaftIlkgepYH 154
                   ++ ++IGG++Gl++++k++a++++sls+lT+pH lvrv+++E +YRa++I +++pYH
   EHU01598.1  98 -DVSLLIGGPEGLAPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYH 154
                  .********************************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1166.68
//
Query:       EHU01599.1  [L=105]
Description: iojap-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-29  101.6   0.2    2.9e-29  101.4   0.2    1.0  1  RsfS      Ribosomal silencing factor during starvation


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.2   1.6e-33   2.9e-29       3      99 .]      10     104 ..       8     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 1.6e-33
                 HHHHHHHTT-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC.C-.--EEECBTTS.SEEEEE-SSEEEEEEECCCHHHHHHHHHC CS
        RsfS   3 iaealedkkaedivvidlrekkssladymviatakserhlkalaeelekklkeeaae.alsveGlnegddWvlvdlgdvvVhllteeaReeydLEelW 99 
                 +++ ++d k+++iv +d++  kss++d+m+i+t++s+rh+ ++ae++e++ + + +  +l veG+ +++dWv+vdlg+v+Vh+++ee+R+ y+LE+lW
  EHU01599.1  10 VVDKIDDLKGQNIVTLDVQG-KSSITDFMIICTGTSTRHVTSIAEHVEQESRAA-GLmPLGVEGK-TAADWVVVDLGEVIVHVMQEESRQLYELEKLW 104
                 688899**************.7****************************9965.55799*****.899***************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 893.03
//
Query:       EHU01600.1  [L=213]
Description: nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-32  110.3   0.0    9.8e-32  110.1   0.0    1.0  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   5.4e-36   9.8e-32       1     143 []       7     186 ..       7     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 5.4e-36
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH..........HHHHHTTTT. CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlelakevdevisvdpweltr..........evlkklkpd. 83 
                      l+gGtFDpiH+GHlr +e ++++ ++  + ++p+++pp++  +p as ++Rl+ml+ a+++ +++ +d +el+r          e ++  + d 
       EHU01600.1   7 LFGGTFDPIHFGHLRPAEALAQQTGLARVTLLPNNVPPHRP-QPEASPQQRLAMLRCAIRDLPLFDIDTRELQRdtpswtvdtlEAIRAERGDq 99 
                      79**************************************9.***************************************6665555555568 PP

                      EEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE...........................HTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  84 klylvigadvledfsewkeleeilgnvklvvvsrp...........................ekqanvllkaekrtngiSstkirer 143
                       l ++ig+d+l ++ +w++++++l+ ++l v++rp                           +++a+ +++ae ++  iS+t+ir+r
       EHU01600.1 100 PLGFIIGQDSLLTLAKWHRWQDLLSLCHLLVCQRPgyptematpdmqdwldrhvihdpqelqQRPAGGIWLAETPRYAISATEIRKR 186
                      *************************************************************999*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1871.77
//
Query:       EHU01601.1  [L=343]
Description: DNA polymerase III, delta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-50  170.8   9.3    1.4e-50  170.8   9.3    1.8  2  DNA_pol3_delt_C  Processivity clamp loader gamma complex DNA 
    1.1e-44  152.3   0.2      3e-44  150.9   0.0    1.7  2  DNA_pol3_delta   DNA polymerase III, delta subunit
  ------ inclusion threshold ------
       0.14   12.6   4.0       0.25   11.8   4.0    1.4  1  Med11            Mediator complex protein


Domain annotation for each model (and alignments):
>> DNA_pol3_delt_C  Processivity clamp loader gamma complex DNA pol III C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.7e+03      73      83 ..     181     191 ..     176     203 .. 0.79
   2 !  170.8   9.3   2.3e-54   1.4e-50       1     123 [.     214     336 ..     214     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                      HHHHHHHS-HH CS
  DNA_pol3_delt_C  73 lsealqrlslt 83 
                      l++al+rlsl+
       EHU01601.1 181 LAQALERLSLQ 191
                      78999999975 PP

  == domain 2  score: 170.8 bits;  conditional E-value: 2.3e-54
                      HHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-HHHHHHHHHHHHH CS
  DNA_pol3_delt_C   1 pfhwvdallagkskralhilqqlrlegsepvillrtlqrellllvqlkrqaahtplralldkhrvwqnrrqllsealqrlsltqlrqavtlltr 94 
                      p+hwvdalla ks+ralhilqql  e+se +illrtlqr+l+ l++l+r++++ plr+l+d++r+wqnrr+l++ealqrl   +l+qa++llt+
       EHU01601.1 214 PYHWVDALLAVKSRRALHILQQLESEDSEVTILLRTLQRDLMTLLHLQRHQTQQPLRTLMDQQRIWQNRRPLFTEALQRLDAARLQQAIHLLTQ 307
                      9********************************************************************************************* PP

                      HHHHHHTSTTSTHHHHHHHHHHHTTS-XX CS
  DNA_pol3_delt_C  95 leltlkqdygqdvwaeleslslllchkal 123
                      +e+tlkqdygq+vw++l++ls+l+ ++a+
       EHU01601.1 308 IEITLKQDYGQSVWPQLQTLSMLITNRAF 336
                      ************************99987 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0     5e-48     3e-44       1     174 []      21     190 ..      21     190 .. 0.99
   2 ?   -1.6   0.0      0.33     2e+03      13      55 ..     288     330 ..     272     335 .. 0.62

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 5e-48
                     EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH.HTTTSTTTTSSSSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEE CS
  DNA_pol3_delta   1 YllyGedellleeskdqilkqalkqgfedlnyikfdlnedwiddvleecetlpffsdkrivvlknpklltkesklnekllkeLeeylsnlpedtl 95 
                     Yll+G+++lll+es d+i+  a++qgfe++  +++d+++dw   ++ +c+++++f +++++ l+ p     e+++n+  ++ L ++ s l+ed+l
      EHU01601.1  21 YLLTGNEPLLLQESADAIRASAVAQGFEEHVSFTLDAQTDWDS-LFVSCQSMSLFTQRQTLTLQFP-----ENGPNAAIAEHLITLASLLHEDIL 109
                     9****************************************99.**********************.....************************ PP

                     EEEEES.S--HHHH...HHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  DNA_pol3_delta  96 Liliapkklderkk...lvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealelLlelvennlsaikqelekLal 174
                     Li  +  kl+++++   ++k+L  +a++v ++t+++++l++w+ +ra+++ l i++ a++lL++++e+nl+a++q+le L+l
      EHU01601.1 110 LICRMA-KLSKAQEnsaWFKTLSAHAVLVPCQTPEQAQLPRWVTSRAKAMRLAIDDAAVQLLCYCYEGNLLALAQALERLSL 190
                     ******.************************************************************************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.33
                     HHHHHHHHHHHTTTEEEEEEEE-STTS-HHH.HTTTSTTTTSS CS
  DNA_pol3_delta  13 eskdqilkqalkqgfedlnyikfdlnedwiddvleecetlpff 55 
                     e+ +++  + l+q +  l +i++ l++d  + v  +++tl+++
      EHU01601.1 288 EALQRLDAARLQQAIHLLTQIEITLKQDYGQSVWPQLQTLSML 330
                     4444455555556666666666666666666666677776665 PP

>> Med11  Mediator complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.0   4.1e-05      0.25       4      84 ..     233     315 ..     231     329 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.1e-05
       Med11   4 iqqLneIDkdIvslLesasealkaLskpp..eqepaseseeaqkeafkaatstffstLssvd.vrLrrqIyaLeeagiitless 84 
                 +qqL++ D +++ lL+++   l +L + +  +++++ ++  +q++  ++    f + L++ d  rL++ I+ L++  i tl+++
  EHU01601.1 233 LQQLESEDSEVTILLRTLQRDLMTLLHLQrhQTQQPLRTLMDQQRIWQNRRPLFTEALQRLDaARLQQAIHLLTQIEI-TLKQD 315
                 8*******************99999987788999**************************98459**********888.56655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2534.37
//
Query:       EHU01602.1  [L=199]
Description: minor lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-13   50.0   0.8    5.2e-13   49.6   0.8    1.1  1  LptE      Lipopolysaccharide-assembly
  ------ inclusion threshold ------
      0.075   12.7   0.2       0.14   11.8   0.2    1.3  1  NEMP      NEMP family


Domain annotation for each model (and alignments):
>> LptE  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.8   5.8e-17   5.2e-13      11     107 .]      43     161 ..      34     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 5.8e-17
                 STT.SHHHSHHHHHHHHHHH..CHTTEEEES.........-SSEE.....EEEEEEEE.TTSCEEEEEEEEEEEEEEEETT..........S......S CS
        LptE  11 neseprlgqeltnaLrdelarrgrlkvvdvd.........adavl.....egeitsytledgtaseyrltltvqvrltdak..........d......a 79 
                 +++     ++lt+ +r++l+    ++v  v+         ++++l      +++ s++  +gt++ey++ + v++++  ++          +      +
  EHU01602.1  43 DPY-----GPLTRVVRQQLR---INNVNIVEatqknsmvvPTLRLggesqGRSTASVF-ISGTTAEYQMAMVVTAQVLIPNkgiypisttvYrsffdnP 132
                 555.....79**********...55555543456788888666667777678888888.79******************9988876665551667778* PP

                 SCCCHHHHHHHHHH.HHHHHHHHHHHHHH CS
        LptE  80 dsllakeaeedalr.raaeqladqivrrl 107
                 +++lak+ae+d++  ++++++a+q+vr+l
  EHU01602.1 133 NAALAKDAEQDMITqEMRQRAAEQLVRKL 161
                 **************************987 PP

>> NEMP  NEMP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.5e-05      0.14     135     230 ..      86     182 ..      86     188 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.5e-05
        NEMP 135 rlvalvlilqssldpelalaalilllllknlpelvlsllkrklrkrklfp.....lkkpkrrllteeEyreqg.eketkkaleelreycrspecsswkt 227
                 r +a v+i   +   ++a+++ + +l    +p++ ++ ++++++ r++f      l k +++ +  +E r+++ e+  +k l+    +++sp++ss++t
  EHU01602.1  86 RSTASVFISGTTAEYQMAMVVTAQVL----IPNKGIYPISTTVY-RSFFDnpnaaLAKDAEQDMITQEMRQRAaEQLVRKLLAVHAAQMDSPQTSSSST 179
                 678999**************999999....55544444444432.222334456644555555555555555505556777777788899*****9999 PP

        NEMP 228 vsr 230
                 v++
  EHU01602.1 180 VAK 182
                 976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1446.76
//
Query:       EHU01603.1  [L=860]
Description: leucyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-76  256.3   0.0      2e-76  255.6   0.0    1.4  1  tRNA-synt_1_2   Leucyl-tRNA synthetase, Domain 2
    1.4e-67  228.4  11.0    4.5e-27   94.6   0.6    6.0  5  tRNA-synt_1     tRNA synthetases class I (I, L, M and V)
    7.4e-32  110.6   0.1      1e-22   80.4   0.0    4.1  3  tRNA-synt_1g    tRNA synthetases class I (M)
    2.5e-15   56.7   0.0    5.4e-15   55.7   0.0    1.5  1  Anticodon_1     Anticodon-binding domain of tRNA
    0.00023   20.2   0.0       0.22   10.4   0.0    2.5  2  tRNA-synt_1f    tRNA synthetases class I (K)
    0.00037   20.0   0.0       0.48    9.7   0.0    2.2  2  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
       0.09   11.5   0.0       0.15   10.8   0.0    1.2  1  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.6   0.0   7.9e-80     2e-76       1     184 [.     221     403 ..     221     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 255.6 bits;  conditional E-value: 7.9e-80
  tRNA-synt_1_2   1 rnWIGrseGleiefkveeseeklevfttrpdtlfGvtfvalapehplveklaekkkelaafieevkkksesereletkekeGvftglkaihPitge 96 
                    rnWIGrseG+ei+f+v++s+ek++v+ttrpdt++G+t+va+a+ hpl+ ++a+++++la+fi+e+++++ +e++++t+ek+G++tgl ++hP+tge
     EHU01603.1 221 RNWIGRSEGVEITFDVADSSEKVTVYTTRPDTFYGATYVAVAAGHPLAAQAAASNPALADFIAECRNTKVAEADMATMEKKGMATGLSVVHPLTGE 316
                    8*********************************************************************************************** PP

  tRNA-synt_1_2  97 kipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedeekkleeseeayteegilvnsgefdglkskeakekiakkl 184
                    ++p+wvan+vlmeygtgavmavPahdqrD+eFa+ky+lpik+vi + d++ + e+s +a+t++g+l+ns e +gl+ ++ +++ia+ l
     EHU01603.1 317 RLPVWVANFVLMEYGTGAVMAVPAHDQRDWEFATKYDLPIKPVILNLDGS-EPEVSAAAMTDKGTLFNSAECSGLDHSAGFNAIADAL 403
                    *********************************************99987.566679***************************9875 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.6   1.7e-30   4.5e-27       2     178 ..      14     171 ..      13     173 .. 0.88
   2 !   18.3   0.5   2.1e-07   0.00055     363     413 ..     174     224 ..     169     227 .. 0.95
   3 !   63.2   0.0   5.6e-21   1.4e-17     188     350 ..     230     407 ..     225     414 .. 0.77
   4 !   23.6   0.0   5.4e-09   1.4e-05     416     559 ..     417     572 ..     412     592 .. 0.57
   5 !   28.2   0.1   2.2e-10   5.7e-07     562     594 ..     618     651 ..     571     659 .. 0.75

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 1.7e-30
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  ++++W+e+++fk + e+e  k+++      Py  G+lH+Gh+ + t+ d++ ry+rm Gk+vl  +GwD  Gl+ e +  k+ +a             
   EHU01603.1  14 VQQQWDENETFKVT-EQEG-KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAP------------ 97 
                  6799********99.4444.55555555678*******************************************997655553333............ PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv 178
                         w    ++ +++q+k lG  +D++re  T ++e+    ++ f++l++kgl+y+ +  vnw+++ +t+l++  v
   EHU01603.1  98 -----APWTYDNIAYMKNQLKLLGFGYDWSRELATCQPEYYRWEQWFFTKLYEKGLVYKKTSAVNWCPNDQTVLANEQV 171
                  .....3577888999************************************************************9665 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2.1e-07
  tRNA-synt_1 363 pfcerskkpiiyrateqWfvrvkeladaalkavekvqfvpkskekryaswl 413
                  ++c+r ++ ++ +  +qWf+++++ a+++l+ ++  +  p++ +++  +w+
   EHU01603.1 174 GCCWRCDTKVERKEIPQWFIKITDYAEELLNDLDTLEEWPEQVKTMQRNWI 224
                  69********************************************99998 PP

  == domain 3  score: 63.2 bits;  conditional E-value: 5.6e-21
  tRNA-synt_1 188 ihvafpladkeevklviaTTtPeTllgdtavavnpeldyv..itkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyv 283
                  ++++f++ad++e k+ ++TT+P T+ g t vav++    +  +   +  la+   +    k  e ++   e+    +g+ v +pl+++++p+ + ++v
   EHU01603.1 230 VEITFDVADSSE-KVTVYTTRPDTFYGATYVAVAAGHPLAaqAAASNPALADFIAECRNTKVAEADMATMEKKGMATGLSVVHPLTGERLPVWVANFV 326
                  789*********.**********************9777755333444455544444444446667777778888899******************** PP

  tRNA-synt_1 284 dkeaGtGvVkiaPahdedDyevgkkynlev.inildedgtlteea.............aefeglkvfdarkkvveelkekg 350
                   +e GtG+V   Pahd+ D+e ++ky+l++ ++il+ dg   e               ae +gl+  +  +++ ++l +kg
   EHU01603.1 327 LMEYGTGAVMAVPAHDQRDWEFATKYDLPIkPVILNLDGSEPEVSaaamtdkgtlfnsAECSGLDHSAGFNAIADALAAKG 407
                  ****************************54255666666544443455555556665567777777777777777777776 PP

  == domain 4  score: 23.6 bits;  conditional E-value: 5.4e-09
  tRNA-synt_1 416 iqdWciSRqrwWGhriplfvsketeevvvreelkelv...agreeeeaekkaleke.akdklkkekgelekdedvlDvWFsSgswpfstlgypee... 506
                   +dW +SRqr+WG +ip+   ++   v+ + e +  v   ++ +++   ++ ++ +   +k   + +   +++d++D+  +S sw ++     ++   
   EHU01603.1 417 LRDWGVSRQRYWGAPIPMVTLEDGT-VMPTPEDQLPVilpEDVVMDG-ITSPIKADpDWAKTTVNGQPALRETDTFDTFMES-SWYYARYTCADYkdg 511
                  58****************9999966.666544332220112222222.222222220122223344456689******9998.677777666655100 PP

  tRNA-synt_1 507 ..dteelkkffpadmlleGlDiirgWvarlillslaltgse.............Pfkevlvhglvrde 559
                    d    +   p d ++ G+          i+  + ++  +             P k++l++g+v+++
   EHU01603.1 512 mlDPAAANYWLPVDQYVGGIEH-------AIMHLMYFRFFHkllrdaglvnsnePAKRLLCQGMVLAD 572
                  1133333444566666666654.......333332222111112222333333599999999999875 PP

  == domain 5  score: 28.2 bits;  conditional E-value: 2.2e-10
  tRNA-synt_1 562 rKmSKslgNvidpldvikkygadalRltli.lsd 594
                   KmSKs+ N idp+ ++++ygad +Rl+++  s+
   EHU01603.1 618 SKMSKSKNNGIDPQLMVERYGADTVRLFMMfASP 651
                  6****************************95554 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0     4e-26     1e-22       5     147 ..      39     184 ..      35     239 .. 0.92
   2 ?    3.2   0.0     0.012        30     218     238 ..     413     433 ..     402     443 .. 0.81
   3 !   18.8   0.0   2.1e-07   0.00054     322     369 ..     614     659 ..     593     673 .. 0.80

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 4e-26
                   E--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEE..ETTSHHHHHH CS
  tRNA-synt_1g   5 talpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkyg..rttseehkel 99 
                   + lpY++g+lH+Gh++++ ++D++aRy+r+ g++vl   g D++G p e +A k+++ p+  + ++ + +k+++k l+  +d      t + e ++ 
    EHU01603.1  39 SMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKLLGFGYDWSRelATCQPEYYRW 135
                   679************************************************************************99999996542269999***** PP

                   HHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG.-EE........-T CS
  tRNA-synt_1g 100 vqeifkklkekgliyekeieqlycpkderflpdry.vegtCPkckseea 147
                    q +f+kl+ekgl+y+k++++ +cp+d++ l++++ ++g C  c ++  
    EHU01603.1 136 EQWFFTKLYEKGLVYKKTSAVNWCPNDQTVLANEQvIDGCCWRCDTKVE 184
                   *******************************988757999999987655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.012
                   HHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 218 lkegLkdlaisrdldwGipvP 238
                   ++  L+d+ +sr+  wG p+P
    EHU01603.1 413 VNYRLRDWGVSRQRYWGAPIP 433
                   6778****************9 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 2.1e-07
                   EE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HH CS
  tRNA-synt_1g 322 tvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswe 369
                       +K+SkS++++++++ ++er+ ad++R +++ ++p++  l  +w+
    EHU01603.1 614 YAGMSKMSKSKNNGIDPQLMVERYGADTVRLFMMFASPADMTL--EWQ 659
                   44558*****************************999975444..443 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.1e-18   5.4e-15       3     147 ..     700     821 ..     698     827 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.1e-18
  Anticodon_1   3 wilselnklvkevteayee.yrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkk 99 
                   + + l+k++++v++++ +   fn+a++a++e+ +n+l++            +s++d+    +++ e+l +++rll+Pf+P+ +  lw    ++lg++
   EHU01603.1 700 ALRRDLHKTIAKVSDDIGRrQTFNTAIAAVMEL-MNKLARAPQ---------DSEQDR----ALMQEALLAVTRLLYPFTPHASYVLW----QTLGGE 779
                  56788*************9899**********5.888833333.........334444....899***********************....999*** PP

  Anticodon_1 100 esimlaewpekaeelekeleeeevellkeivkairklrselkikpsse 147
                   +i +aewp ++   ++++     + l  +v++++k+r++++++  ++
   EHU01603.1 780 GTIDNAEWPVAD---DAAM---VEDSLLVVVQVNGKVRGKITVAAEAT 821
                  *********744...4555...4555677*************997766 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   8.7e-05      0.22       2      64 ..      17      75 ..      16      82 .. 0.76
   2 !    7.0   0.0    0.0009       2.3     277     314 ..     615     652 ..     610     661 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.7e-05
  tRNA-synt_1f  2 aWadklaeklieerkkkkaekdevvvesGispSGliHiGnlrevltadlvaralrkrgeevrl 64
                  +W +++  k++e++ k+    +++ ++    pSG++H+G +r+   +d++ar  r +g++v +
    EHU01603.1 17 QWDENETFKVTEQEGKE----KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 75
                  68888888998544333....4555555567*********************99999998755 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0009
  tRNA-synt_1f 277 kggekmssSkGnvltledwlevaepevlrflilrrkPk 314
                    g++kms+Sk n++ ++ ++e +  +++r++++ + P 
    EHU01603.1 615 AGMSKMSKSKNNGIDPQLMVERYGADTVRLFMMFASPA 652
                   6788*****************99999999988876775 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00019      0.48      12      48 ..      35      73 ..      24      75 .. 0.74
   2 !    7.9   0.0   0.00067       1.7     250     297 ..     616     664 ..     609     668 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                  EEEEEEBTT..S--BHHHHHHHHHHHHHHHHHHHTT-EE CS
  tRNA-synt_1e 12 lYvCGptvy..dashlGhaRslvafDilrrilqalgYdv 48
                  +Y+  +  y     h+Gh+R++ + D+++r+ ++lg +v
    EHU01603.1 35 YYCLSMLPYpsGRLHMGHVRNYTIGDVIARYQRMLGKNV 73
                  44444444422578*****************99999877 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00067
                   TTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-.TTS-EEE-HHHHH CS
  tRNA-synt_1e 250 egekmsksLknfitikdvlkkfdprqlRllllsah.yrsqldfkeelle 297
                      kmsks +n i  + +++++ + ++Rl+++ a     +l+++e+ +e
    EHU01603.1 616 GMSKMSKSKNNGIDPQLMVERYGADTVRLFMMFASpADMTLEWQESGVE 664
                   568**************************99876514566888887766 PP

>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.9e-05      0.15     310     423 ..     624     753 ..     606     762 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.9e-05
                     GTT-STTS..--SBTT--CG...............SSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHHHHHHHTTT.......TT CS
  Glyco_hydro_15 310 avgeldpl..vrRysedvkp...............dklglsGrpyylctlwtvetlldelyekagkgrlwglvryalglleklves.......kq 380
                     +++ +dp+  v Ry++d+ +               ++ g +G + +l+ +w      + +y+  +kg  ++l   +l+  +k   +         
      EHU01603.1 624 KNNGIDPQlmVERYGADTVRlfmmfaspadmtlewQESGVEGANRFLKRVW------KLVYDHSQKGATVALDIASLNDVQK---AlrrdlhkTI 709
                     4566899999*****************************************......5556555555533333333322222...2222444244 PP

                     GGGSSEEE.TCHHHHHHHHHHHHHHHHHHHHHHS-TTS---SEE CS
  Glyco_hydro_15 381 ltvGlppe.resvisaplpveeladliveaveednslgvLteev 423
                     ++v++    r+++++a+ +v el +++ +a +++++++ L +e 
      EHU01603.1 710 AKVSDDIGrRQTFNTAIAAVMELMNKLARAPQDSEQDRALMQEA 753
                     557766667************************66666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.51
# Mc/sec: 5072.99
//
Query:       EHU01604.1  [L=160]
Description: uncharacterized DUF1451 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-47  158.8   0.1      1e-46  158.6   0.1    1.0  1  DUF1451         Zinc-ribbon containing domain
     0.0093   15.9   0.6        2.7    8.0   0.1    2.4  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
  ------ inclusion threshold ------
       0.12   12.1   0.7       0.12   12.1   0.7    1.8  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.13   12.1   1.7       0.18   11.7   0.6    1.6  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
        6.8    6.3   7.2        8.2    6.0   0.2    2.7  3  TF_Zn_Ribbon    TFIIB zinc-binding


Domain annotation for each model (and alignments):
>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.1   2.8e-50     1e-46       3     147 .]      15     157 ..      13     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 2.8e-50
     DUF1451   3 leeaeekseeeleelvekakeklseaeeltkeelelvaeylkrDleeaarsleeskeeleewlsldlelieesllealasiaDktqvelaelaedleha 101
                 l+e+ +++ ++l+ lv++ +++l++ ++lt +e+++    ++rDl+e++r+++e +e     +s+++++i+es++++la+i+Dk+q+e++e+++dl+h+
  EHU01604.1  15 LTERLRHGDRDLDTLVDDRRRHLQAHSDLTPDEIDRALTSVRRDLAEFGRNYAEAEE--PVADSVFMRVIRESIWKELADITDKSQLEWREVFQDLQHH 111
                 689999***************************************************..5799************************************ PP

     DUF1451 102 gvyqsGevvglGtlvCekCgkelalkkteeippCpkCgateFrRep 147
                 gvyqsGevvglG+lvCekC+ + a++++e++++Cp+C++++F R+p
  EHU01604.1 112 GVYQSGEVVGLGNLVCEKCHFTRAIYTPETLSRCPECNHDQFYRQP 157
                 ********************************************96 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0031        11      19      26 ..     124     131 ..     113     132 .. 0.87
   2 !    8.0   0.1   0.00076       2.7       1      10 [.     141     150 ..     141     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
  PhnA_Zn_Ribbon  19 llvCpeCa 26 
                     +lvC++C+
      EHU01604.1 124 NLVCEKCH 131
                     79*****8 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00076
  PhnA_Zn_Ribbon   1 tlpkCplCaS 10 
                     tl+ Cp+C+ 
      EHU01604.1 141 TLSRCPECNH 150
                     6899999985 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.6   5.8e+03       3      14 ..      23      34 ..      23      42 .. 0.75
   2 ?   12.1   0.7   3.3e-05      0.12      22      52 ..     124     150 ..     120     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.6
  zinc_ribbon_10  3 DrvldvLvGdde 14
                    Dr ld Lv d  
      EHU01604.1 23 DRDLDTLVDDRR 34
                    788999997765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.3e-05
  zinc_ribbon_10  22 alICskChshnGlapkeeleevkyrCpkCga 52 
                      l+C+kCh +   +++e+l+    rCp+C++
      EHU01604.1 124 NLVCEKCHFTRAIYTPETLS----RCPECNH 150
                     59************665555....8****98 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6     5e-05      0.18     114     179 ..       7      75 ..       2      81 .. 0.85
   2 ?   -1.3   0.0      0.49   1.7e+03      39      65 ..      83     109 ..      79     112 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                     HHHHHHCHHHHHHHH...HHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXX CS
  Apolipoprotein 114 alkarlapyveelrq...klaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanle 179
                     + +a la ++e+lr+   +l+  +++ +++l++h++  ++++++ ++ +r+ l+e  ++  e  e++++
      EHU01604.1   7 EYHASLAVLTERLRHgdrDLDTLVDDRRRHLQAHSDLTPDEIDRALTSVRRDLAEFGRNYAEAEEPVAD 75 
                     5678899999999955559************************************88887777776666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.49
                     HHHHHHHHHHHHHHCCCCHHHHHHCCC CS
  Apolipoprotein  39 rarlraeleevrarlepyrdevqeqlg 65 
                     r+ + +el + +++ +    ev + l+
      EHU01604.1  83 RESIWKELADITDKSQLEWREVFQDLQ 109
                     444445555555555555555544444 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         2   7.1e+03      36      42 ..      97     103 ..      96     103 .. 0.78
   2 ?    3.7   0.3     0.012        43      18      25 ..     123     130 ..     121     130 .. 0.92
   3 ?    6.0   0.2    0.0023       8.2       2      12 ..     144     154 ..     144     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                   CCCHHHH CS
  TF_Zn_Ribbon  36 egpewre 42 
                   +  ewre
    EHU01604.1  97 SQLEWRE 103
                   6789*97 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.012
                   TCEEESSS CS
  TF_Zn_Ribbon  18 gelvCtdC 25 
                   g+lvC++C
    EHU01604.1 123 GNLVCEKC 130
                   99****** PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0023
                   EETTTTCEECH CS
  TF_Zn_Ribbon   2 kCPnCgstnlv 12 
                   +CP+C++++++
    EHU01604.1 144 RCPECNHDQFY 154
                   5*****98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1151.69
//
Query:       EHU01605.1  [L=241]
Description: ATP-binding component of an ABC superfamily glutamate/aspartate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-33  115.6   0.0    3.3e-33  115.1   0.0    1.2  1  ABC_tran         ABC transporter
    6.1e-09   36.1   0.0     0.0015   18.4   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.3e-07   30.5   0.2    2.4e-06   27.1   0.2    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
    4.9e-05   23.6   0.4      9e-05   22.8   0.4    1.8  1  AAA_22           AAA domain
    0.00013   22.0   0.2    0.00025   21.0   0.2    1.5  1  RsgA_GTPase      RsgA GTPase
    0.00013   22.0   0.0    0.00016   21.6   0.0    1.2  1  Rad17            Rad17 P-loop domain
    0.00026   21.4   0.0    0.00035   21.0   0.0    1.5  1  AAA_16           AAA ATPase domain
     0.0003   20.5   0.1    0.00057   19.6   0.1    1.4  1  AAA_29           P-loop containing region of AAA domain
    0.00068   19.8   0.0     0.0011   19.1   0.0    1.5  1  AAA_33           AAA domain
     0.0023   17.9   0.4      0.022   14.7   0.0    2.4  3  ATPase_2         ATPase domain predominantly from Archaea
     0.0056   16.7   0.1     0.0073   16.4   0.1    1.3  1  Dynamin_N        Dynamin family
     0.0059   15.5   0.1     0.0083   15.0   0.1    1.1  1  DLIC             Dynein light intermediate chain (DLIC)
     0.0076   15.1   2.3          2    7.1   0.1    3.4  3  ABC_ATPase       Predicted ATPase of the ABC class
  ------ inclusion threshold ------
      0.015   15.7   1.5       0.13   12.7   0.2    2.6  2  AAA              ATPase family associated with various cellul
      0.015   14.4   0.3      0.032   13.3   0.3    1.5  1  T2SSE            Type II/IV secretion system protein
      0.015   14.6   0.6      0.027   13.7   0.1    1.6  2  Septin           Septin
      0.018   14.8   0.0      0.034   13.9   0.0    1.6  1  AAA_30           AAA domain
       0.02   14.6   0.0       0.85    9.3   0.0    2.1  2  AAA_15           AAA ATPase domain
      0.023   14.4   0.0      0.042   13.6   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
      0.026   15.1   0.0      0.044   14.3   0.0    1.5  1  AAA_18           AAA domain
      0.026   14.2   0.3       0.09   12.5   0.1    1.9  2  AAA_24           AAA domain
      0.031   13.9   0.8      0.052   13.1   0.2    1.7  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.033   14.7   0.0      0.066   13.7   0.0    1.5  1  AAA_23           AAA domain
      0.044   12.4   0.2       0.42    9.2   0.0    2.0  2  AAA_13           AAA domain
      0.047   13.9   0.4        3.1    8.1   0.4    2.9  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.05   12.9   0.2      0.094   12.1   0.2    1.6  1  ATPase           KaiC
      0.052   13.1   0.3      0.082   12.4   0.3    1.3  1  AAA_7            P-loop containing dynein motor region
      0.053   13.9   0.2       0.19   12.2   0.0    2.0  2  RNA_helicase     RNA helicase
      0.067   11.9   0.1      0.097   11.4   0.1    1.2  1  RNA12            RNA12 protein
      0.083   12.2   0.0       0.14   11.4   0.0    1.3  1  Zeta_toxin       Zeta toxin
      0.085   12.2   0.0       0.14   11.5   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.09   12.7   0.7       0.17   11.8   0.7    1.4  1  NTPase_1         NTPase
       0.11   10.4   0.3       0.52    8.2   0.0    1.8  2  Herpes_Helicase  Helicase
       0.14   11.9   1.0       0.19   11.5   0.2    1.6  1  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.15   12.1   0.1        0.4   10.7   0.0    1.7  2  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   6.4e-36   3.3e-33       1     137 []      17     165 ..      17     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 6.4e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 l + s ++k ge+v++ G++G+GKStL+k++ gl+  ++G+i+++g+++++  ++l +lr+++g+++q+ +lfp+l++ +n               ++e
  EHU01605.1  17 LTDCSTEVKTGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGSITVNGTEVNNkkTNLAKLRSKVGMVFQHFELFPHLSIIDNlvlaqvkvlkrdktVARE 115
                 568899*******************************************999999********************************999875444444 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +  k+l+++gl+  +d    + p +LSgGq+qrva+aral+ +p  +l+DEpt+
  EHU01605.1 116 KGLKLLTRVGLSAHAD----KFPGQLSGGQQQRVAIARALCMDPIAMLFDEPTS 165
                 4556666666666444....456*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.7e-05    0.0085       2      29 ..      30      57 ..      29      97 .. 0.79
   2 !   18.4   0.0     3e-06    0.0015     236     297 ..     136     194 ..     116     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdv 29
                 v+ Gp gsGKS+L+++  +l  +++ +
  EHU01605.1 30 VVVCGPSGSGKSTLIKTVNGLEPVQQGS 57
                799***************9995554433 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3e-06
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +lS G+++  a++ al  ++      l+DEp + L+P+++ ++l+++ el+++g   +++TH
  EHU01605.1 136 QLSGGQQQRVAIARALCMDP---IAMLFDEPTSALDPEMINEVLDVMVELAQEGMTMMVVTH 194
                 67777777766666666666...77**********************999998999999999 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   4.7e-09   2.4e-06      24     207 ..      27     204 ..      11     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 4.7e-09
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                  ++ ++ Gp GSGKs l+  +   L   ++ ++  + ++  ++++k++ +  + +v ++f++ +       +++si  +++  +  ++   +k+v +++
  EHU01605.1  27 GEVVVVCGPSGSGKSTLIKTVN-GLEPVQQGSITVNGTE--VNNKKTNLAKLRSKVGMVFQHFELF-----PHLSIIDNLVLAQV-KVLKRDKTVAREK 116
                 3578999*************94.3333333344444333..5556888888899999999888877.....77888888877777.4555556666666 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                   +ll ++g+s +      +LSgG+++ va+a  + +   +p + +l+De  +aLD + +++v +++ e  ++ + ++v++++ ++ +k+ +
  EHU01605.1 117 GLKLLTRVGLSAHadkfpgQLSGGQQQRVAIARALCM---DPIA-MLFDEPTSALDPEMINEVLDVMVELAQEgMTMMVVTHEMGFARKVAN 204
                 6789999999998888888**********99988665...4554.589**************9998777665559********999887644 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.4   1.8e-07     9e-05       4      64 ..      26      79 ..      22     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.8e-07
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellral 64
                t  ++vv+G+sG+GK+tl++++    +        + + ++v+ ++ ++ k+ l +l +++
  EHU01605.1 26 TGEVVVVCGPSGSGKSTLIKTVNGLEPV-------QQGSITVNGTEVNNKKTNLAKLRSKV 79
                67899*****************998876.......56666666666666666666665555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   4.8e-07   0.00025      96     130 ..      23      58 ..      10      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.8e-07
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  ++k  +++v++G+SG GKStLi+++++ + ++ g++
   EHU01605.1  23 EVKTgEVVVVCGPSGSGKSTLIKTVNGLEPVQQGSI 58 
                  444449****************99998666555555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.2e-07   0.00016      40     117 ..      22      97 ..       3     163 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.2e-07
       Rad17  40 LesrkkriLLisGPsGCgkstvvkvLsk.elgiklrewlnpvslkepdnqksdfkgltekesrflsqiesfkeleLkda 117
                  e +  ++++++GPsG gkst +k +   e + +    +n+++    +n+k+++  l  k        e f+ l + d 
  EHU01605.1  22 TEVKTGEVVVVCGPSGSGKSTLIKTVNGlEPVQQGSITVNGTE---VNNKKTNLAKLRSKVGMVFQHFELFPHLSIIDN 97 
                 344555699***************9876145555566677777...666666666665555555555566655544332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.7e-07   0.00035      12      63 ..      17      67 ..      12     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 6.7e-07
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrellr.alekdggiflrgkcdql 63
                L+++   v++g  e+v++ G+sG+GKs+l++++   +  ++g i+++g+ + +
  EHU01605.1 17 LTDCSTEVKTG--EVVVVCGPSGSGKSTLIKTVNGlEPVQQGSITVNGTEVNN 67
                55555566666..89****************9985344445677787777777 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.1e-06   0.00057      17      39 ..      22      44 ..       6      51 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                 e+++ +++++ GpsGsGKSTl+
  EHU01605.1 22 TEVKTGEVVVVCGPSGSGKSTLI 44
                455655599*************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.2e-06    0.0011       1      19 [.      29      47 ..      29     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-06
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +v+++G++GsGKstl++ +
  EHU01605.1 29 VVVVCGPSGSGKSTLIKTV 47
                89*************9987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.3e-05     0.022      17      40 ..      24      47 ..      20     109 .. 0.88
   2 ?   -1.0   0.0       2.7   1.4e+03     120     162 ..     156     192 ..     147     206 .. 0.79
   3 ?    0.1   0.1       1.2   6.3e+02      47      78 ..     202     236 ..     189     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.3e-05
    ATPase_2 17 repneiyfiYGpegsGKtaLlkei 40
                 ++ e++++ Gp gsGK++L+k +
  EHU01605.1 24 VKTGEVVVVCGPSGSGKSTLIKTV 47
                56889****************975 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.7
    ATPase_2 120 iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvvi 162
                 i++++De   +     +   ++++e l+++++l +e  +++v+
  EHU01605.1 156 IAMLFDEPTSAL----D--PEMINEVLDVMVELAQEGMTMMVV 192
                 667777777777....4..789999999999998888887776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
    ATPase_2  47 kdkyviyyialreesiskldefie...eeeekkkl 78 
                    +vi++++ + ++ +++d+f++    e+ k++l
  EHU01605.1 202 VANRVIFMDEGKIIEDTHKDDFFNnpqSERAKDFL 236
                 45689999999999999999999966444444444 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.4e-05    0.0073       1      47 [.      30      74 ..      30     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.4e-05
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas 47
                ++v+G   sGKS+++  + g +  p++++ +T + +e+  ++++ a+
  EHU01605.1 30 VVVCGPSGSGKSTLIKTVNGLE--PVQQGSITVNGTEVNNKKTNLAK 74
                89********************..*************9998877655 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.6e-05    0.0083      14      55 ..      16      57 ..      10      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
        DLIC 14 vstrsssklPsgksvlvlGedgsGkttliaklqGveeekkGr 55
                v t +s+ + +g  v+v G +gsGk+tli  + G+e  ++G+
  EHU01605.1 16 VLTDCSTEVKTGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGS 57
                779999******************************999986 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.019       9.8     242     264 ..      24      47 ..      22      52 .. 0.89
   2 ?   -0.8   0.0      0.98     5e+02     110     139 ..     104     133 ..      98     137 .. 0.87
   3 !    7.1   0.1     0.004         2     324     420 ..     138     218 ..     127     238 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.019
                 E-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAl 264
                 +++G v+++ G+   GKsTL++ +
  EHU01605.1  24 VKTGeVVVVCGPSGSGKSTLIKTV 47 
                 688889***************976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.98
                 EE--BSSEEE--EEEEEEEEE---EETTSE CS
  ABC_ATPase 110 evlersavelsdekielrlrvgLPaegrri 139
                 +vl+r   ++++++++l  rvgL a+ ++ 
  EHU01605.1 104 KVLKRDKTVAREKGLKLLTRVGLSAHADKF 133
                 799********************9998776 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.004
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvt 420
                 SG   q ++i++al ++  ++L+DE tsA                  e i+ ++d + el ++ g+++++v+  +g   +vA++vi m+e k+ + t
  EHU01605.1 138 SGGQQQRVAIARALCMDPIAMLFDEPTSALD---------------PEMINEVLDVMVEL-AQEGMTMMVVTHEMGFARKVANRVIFMDEGKIIEDT 218
                 6666666777777777777777777777643...............33344445555555.555666666666666666666666666666665555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   0.00025      0.13       1      52 [.      30      85 ..      30     197 .. 0.83
   2 ?    1.4   0.1      0.77     4e+02      53      74 ..     199     219 ..     185     241 .] 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00025
                EEEESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSS..STTHHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavake..lgvefleisgsellsk..yvgesekkirelfke 52
                v+++Gp G GK++l+k v     +++  ++++g+e+ +k   + +  +k+ ++f++
  EHU01605.1 30 VVVCGPSGSGKSTLIKTVNGLepVQQGSITVNGTEVNNKktNLAKLRSKVGMVFQH 85
                5799*************987744567778888888886655455556666666665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.77
                 HHHTSTSEEEEEETGGGHHHHH CS
         AAA  53 akekakpsilfiDEidalaksr 74 
                 a++ a   ++f+DE   +  + 
  EHU01605.1 199 ARKVA-NRVIFMDEGKIIEDTH 219
                 55555.69******65554444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   6.2e-05     0.032     125     188 ..      23      83 ..      14      87 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-05
       T2SSE 125 avrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtf 188
                  v++  +++v G+ gsGK+tl+ ++    + + +  +tv    E++ ++ n  +l++k +++ f
  EHU01605.1  23 EVKTGEVVVVCGPSGSGKSTLIKTVNGLEPVQ-QGSITVN-GTEVNNKKTNLAKLRSK-VGMVF 83 
                 56777899*************99876655555.5566775.45888888888888887.66555 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.4e-05     0.027       7      49 ..      30      73 ..      26      97 .. 0.67
   2 ?   -2.1   0.1       3.6   1.8e+03      66     106 ..     192     232 ..     171     239 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.4e-05
                EEEEEBTTSSCCCCCCTTSSSS--------.----------S-E CS
      Septin  7 lmvvGesglGkttlintlfetdlieeekle.easekkkktveik 49
                ++v+G sg Gk+tli+t+   + +++ +++ + +e ++k++++ 
  EHU01605.1 30 VVVCGPSGSGKSTLIKTVNGLEPVQQGSITvNGTEVNNKKTNLA 73
                789**************988777666433313344444444444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.6
                 EEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHHCTSS--S CS
      Septin  66 viDtpgfGdavdnskswepiveyideqfeeylreesklkRk 106
                 v    gf  +v n+  +    + i++ +++ + ++ + +R+
  EHU01605.1 192 VTHEMGFARKVANRVIFMDEGKIIEDTHKDDFFNNPQSERA 232
                 33445788888888888888888888887777777777774 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.6e-05     0.034      16      42 ..      26      51 ..      13     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaw 42
                +g  v+v+ Gp G+GK+t++k+++ + 
  EHU01605.1 26 TG-EVVVVCGPSGSGKSTLIKTVNGLE 51
                33.499***************997664 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0017      0.85      18      79 ..      23      79 ..      14     124 .. 0.70
   2 ?    3.5   0.0     0.092        47     324     365 ..     155     195 ..     138     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
      AAA_15 18 eidlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikI 79
                e++  e + v++G+ +sGKS++++  +      e+ ++  i+++  ++++++ +  + + k+
  EHU01605.1 23 EVKTGE-VVVVCGPSGSGKSTLIKTVN----GLEPVQQGSITVNGTEVNNKKTNLAKLRSKV 79
                455556.99*************99773....3333335555555555555555555555555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.092
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++  l++EP   L p++ +++ + + ela+++    ++ TH 
  EHU01605.1 155 PIAMLFDEPTSALDPEMINEVLDVMVELAQEGM-TMMVVTHE 195
                 56789***************************7.89999995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.2e-05     0.042      44     117 ..      24      98 ..      12     111 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.2e-05
   IstB_IS21  44 iekkenivllGpsGvGKshlaial.gveavragl.svlfvrvedLveelkrarrdgklaralkrllkv.dllilDdl 117
                 +++ e +v++GpsG GKs l  ++ g e v++g   v  + v++  ++ ++a+   k+    +++  + +l i+D+l
  EHU01605.1  24 VKTGEVVVVCGPSGSGKSTLIKTVnGLEPVQQGSiTVNGTEVNN--KKTNLAKLRSKVGMVFQHFELFpHLSIIDNL 98 
                 778999************99776547888887741333333333..4444445555555555555544355566665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.6e-05     0.044       1      19 [.      30      48 ..      30     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-05
      AAA_18  1 IlltGtpGvGKttlakeLs 19
                ++++G++G+GK+tl k ++
  EHU01605.1 30 VVVCGPSGSGKSTLIKTVN 48
                79************99874 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00018      0.09       4      22 ..      29      47 ..      26      78 .. 0.87
   2 ?   -0.8   0.0         2     1e+03     157     187 ..     169     211 ..     163     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 +++ Gpsg+GK+tl+k+ 
  EHU01605.1 29 VVVVCGPSGSGKSTLIKTV 47
                689**************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2
      AAA_24 157 anelkeevDlvlranlkred............kvgervlktsk 187
                  + ++e +D+++++ ++  +            kv  rv++ ++
  EHU01605.1 169 PEMINEVLDVMVELAQEGMTmmvvthemgfarKVANRVIFMDE 211
                 6678888888888888776677777777777777777776665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2    0.0001     0.052       2      33 ..      29      60 ..      28      83 .. 0.76
   2 ?   -2.0   0.0       4.5   2.3e+03      23      32 ..     183     192 ..     144     220 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                EEEEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglklaviv 33
                v+v++G+ GsGK+tL++++   +  ++  + v
  EHU01605.1 29 VVVVCGPSGSGKSTLIKTVNGLEPVQQGSITV 60
                799**************987555555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.5
                 T--SS-EEEE CS
        cobW  23 nraglklavi 32 
                  ++g+ + v+
  EHU01605.1 183 AQEGMTMMVV 192
                 2333333344 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   0.00013     0.066      19      37 ..      27      45 ..       2      48 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00013
      AAA_23 19 kgltlItGpNGaGKTTild 37
                  +++++Gp G+GK+T++ 
  EHU01605.1 27 GEVVVVCGPSGSGKSTLIK 45
                46899************95 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.21   1.1e+02      20      41 ..      31      52 ..      15      86 .. 0.75
   2 ?    9.2   0.0   0.00083      0.42     531     581 ..     159     206 ..     153     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.21
      AAA_13 20 liYGwNGaGKTtLSrllrslel 41
                ++ G  G+GK+tL +  + le 
  EHU01605.1 31 VVCGPSGSGKSTLIKTVNGLEP 52
                677999*******999998853 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00083
      AAA_13 531 viDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkknt 581
                  +D P S LD ++++ v   + + +   ++   +++ TH + f ++v +++
  EHU01605.1 159 LFDEPTSALDPEMINEVLDVMVELA---QEGMTMMVVTHEMGFARKVANRV 206
                 68**********************9...888899*************9975 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4     0.006       3.1      65      89 ..     156     180 ..     122     181 .. 0.78
   2 ?   -0.1   0.0       2.2   1.1e+03      60      72 ..     200     212 ..     186     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.006
     SbcCD_C  65 rlvfLDEAFsklDeesiatllelle 89 
                   +++DE  s lD+e+i+++l+++ 
  EHU01605.1 156 IAMLFDEPTSALDPEMINEVLDVMV 180
                 46899***************99885 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.2
     SbcCD_C  60 repalrlvfLDEA 72 
                 r+ a r++f+DE+
  EHU01605.1 200 RKVANRVIFMDEG 212
                 5677899*****8 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00018     0.094      18      90 ..      26      99 ..      20     207 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      ATPase 18 egrvvlitGepGtGKtifalqFlikgaekygepgvfvt...veepaedlrenakslGwdlekleeegklaiidase 90
                 g+vv ++G +G+GK+++ ++  ++g+e +++  + v    v+ ++++l +  +++G+ ++++e   +l iid   
  EHU01605.1 26 TGEVVVVCGPSGSGKSTLIKT--VNGLEPVQQGSITVNgteVNNKKTNLAKLRSKVGMVFQHFELFPHLSIIDNLV 99
                689***************995..99999999998888632244455999999999******999999999999655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   0.00016     0.082      30      67 ..      24      60 ..      14      82 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
       AAA_7 30 lknkkpvllvGptGtGKtviikdllkkldkekylslti 67
                +k +  v+++Gp+G+GK+++ik++ + l++ +  s+t+
  EHU01605.1 24 VKTGEVVVVCGPSGSGKSTLIKTV-NGLEPVQQGSITV 60
                7788899**************985.3444444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00036      0.19       1      17 [.      30      46 ..      30      77 .. 0.82
   2 ?   -1.3   0.0       5.5   2.8e+03      56      64 ..     221     229 ..     170     239 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00036
  RNA_helicase  1 iwlyGpsgeGKStlake 17
                  ++++Gpsg GKStl+k+
    EHU01605.1 30 VVVCGPSGSGKSTLIKT 46
                  689************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.5
  RNA_helicase  56 dDfgqvkde 64 
                   dDf +++++
    EHU01605.1 221 DDFFNNPQS 229
                   555555554 PP

>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00019     0.097      19      86 ..      29      99 ..      19     117 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
       RNA12 19 FivvkGPrGSGkkeLvldrvlkdrkk....vlvidCdelvkarndaelis.aaAsqlGYfPvFswlnsissli 86
                 +vv GP GSGk+ L+  ++++  +      ++++  e+ + +++ ++++ ++      f +F++l+ i +l+
  EHU01605.1 29 VVVVCGPSGSGKSTLI--KTVNGLEPvqqgSITVNGTEVNNKKTNLAKLRsKVGMVFQHFELFPHLSIIDNLV 99
                699*************..4444333223378889998888877765555414455556788888888888887 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00028      0.14      12      54 ..      23      65 ..      14      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00028
  Zeta_toxin 12 sqerPklillgGqpGAGKselaellkdelerqgnvvrldpDdl 54
                + ++  ++++ G +G+GKs+l++ ++     q++ ++++++++
  EHU01605.1 23 EVKTGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGSITVNGTEV 65
                4577889****************99887778888888887765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00028      0.14      24      60 ..      29      65 ..      11      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplseeealevaki 60
                   ++++Gp+GsGK+ l+k +++l p  + + +++ +++
    EHU01605.1 29 VVVVCGPSGSGKSTLIKTVNGLEPVQQGSITVNGTEV 65
                  57899****************9987766655555554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   0.00032      0.17       2      37 ..      30      67 ..      29      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
                EEEE--TTSSHHHHHHHH..HHHH...GGGEEEEEEEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkv..lellkssgvkvgGfytee 37
                v++ Gp+G+GK+Tl+k v  le +++  ++v+G  +++
  EHU01605.1 30 VVVCGPSGSGKSTLIKTVngLEPVQQGSITVNGTEVNN 67
                789*************9944466777778888876655 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.001      0.52      59     118 ..      27      87 ..       3     119 .. 0.73
   2 ?    0.4   0.0      0.23   1.2e+02     677     708 ..     177     208 ..     145     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
  Herpes_Helicase  59 FsaylitGtAGaGkstsiqalaenldClitgatvvAaqnlsak.Lkraks.aqvktiykaFG 118
                       ++ ++ G  G+Gkst i++++  l+ +  g+ +v    +++k  + ak  ++v  +++ F 
       EHU01605.1  27 GEVVVVCGPSGSGKSTLIKTVN-GLEPVQQGSITVNGTEVNNKkTNLAKLrSKVGMVFQHFE 87 
                      47899***************97.699999999999888776541334454578888888885 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.23
  Herpes_Helicase 677 rvleellkkklprlvlrDesGFisvldnnvsk 708
                       v+ el +++++++v+  e+GF   + n v  
       EHU01605.1 177 DVMVELAQEGMTMMVVTHEMGFARKVANRVIF 208
                      467789999*************9888777755 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00038      0.19       1      23 [.      32      54 ..      32      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00038
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelr 23
                v+Gp GsGK+t++++++ + + +
  EHU01605.1 32 VCGPSGSGKSTLIKTVNGLEPVQ 54
                89************998776655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00077       0.4       2      46 ..      27      70 ..      26      99 .. 0.70
   2 ?   -1.7   0.0       5.4   2.8e+03      63      73 ..     202     212 ..     158     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00077
      AAA_14  2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkl 46
                ++++v+ G+  +GK+tl+k++   + v+ +  + +n  + ++kk 
  EHU01605.1 27 GEVVVVCGPSGSGKSTLIKTVNGLEPVQ-QGSITVNGTEVNNKKT 70
                5799**************9985444444.4555566655555544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.4
      AAA_14  63 ekktylflDEi 73 
                   ++++f+DE 
  EHU01605.1 202 VANRVIFMDEG 212
                 34567888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 1614.65
//
Query:       EHU01606.1  [L=225]
Description: permease component of an ABC superfamily glutamate/aspartate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-17   63.4  18.7    2.2e-17   63.4  18.7    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2     0.047   8.4e+02     103     126 ..       9      32 ..       8      36 .. 0.74
   2 !   63.4  18.7   1.2e-21   2.2e-17       1     183 [.      34     223 ..      30     225 .] 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.047
  BPD_transp_1 103 lPnalppiitglilafggllggav 126
                   +P +lp+++ gl+++f + l++ v
    EHU01606.1   9 IPPSLPYLLNGLVITFKITLTAVV 32 
                   577888888888888877776665 PP

  == domain 2  score: 63.4 bits;  conditional E-value: 1.2e-21
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   gil+G l+a   l+  ++++++   ++++++s+P + +++ ++lv+         i+ +     +++++++ l+ a+y   i+ra++ s+ +++  a
    EHU01606.1  34 GILWGTLLAvmrLSTFRPISWFAKLYVNLFRSVPLVMVLLWFYLVVpsflqqvlGISPKTDIRLISAMVAFSLFEAAYYSEIIRAGIISIARGQSSA 130
                   78889999999999999*******************9888877777999998854443333445559999*************************** PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   a+alG++ wq +r v+lP+a++ ++++l+ + + l+ +++l++ l     l +++ +a+ +   + +++ +vl++++++++++l+a +l+ +l ++ 
    EHU01606.1 131 ALALGMTQWQSMRLVILPQAFRAMVPLLLTQGIVLFQDTSLVYVLS----LADFFRTASTIGERDGTQVEMVLFAGLVYFVISLSASLLVSYLKRKR 223
                   **********************************************....*******************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1669.33
//
Query:       EHU01607.1  [L=246]
Description: membrane component of an ABC superfamily glutamate and aspartate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-28   97.4   6.2    8.1e-28   97.4   6.2    1.4  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   6.2   4.5e-32   8.1e-28       5     184 ..      47     238 ..      43     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 4.5e-32
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.............vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   G++ +   + +n+ l  + + ++++++ +P +v +++++lv+             + l+   + +++ +i+l l++a+ v+  +raa++slp+++++
    EHU01607.1  47 GSFFGilrTVPNRLLATIGTCYVELFRNIPLIVQFFFWYLVApelvgqklgmwfkSELDPNLQFFISSVICLGLFTAARVCEQVRAAIQSLPRGQKN 143
                   555555555*****************************9999**********999888888899999****************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   a +a+G++  q++r+v+lPna ++i++ +   + +l++++++++++g    l ++  +a    dys+ ++ ++ a+++a++++nlv+++l+ l++++
    EHU01607.1 144 AGLAMGLTLPQTYRYVLLPNAYRVIVPPMTSEMLNLVKNSAIASTIG----LVDMAAQAGKLLDYSAHAYESFTAITLAYIAINLVIMFLMSLVERK 236
                   ***********************************************....********************************************** PP

  BPD_transp_1 183 vr 184
                   vr
    EHU01607.1 237 VR 238
                   98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1793.29
//
Query:       EHU01608.1  [L=298]
Description: glutamate/aspartate periplasmic binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-45  154.3   0.5    3.9e-45  154.0   0.5    1.1  1  SBP_bac_3       Bacterial extracellular solute-binding protei
     0.0045   17.0   0.4      0.015   15.2   0.1    2.0  2  NMT1            NMT1/THI5 like
     0.0046   16.6   0.0     0.0065   16.1   0.0    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
  ------ inclusion threshold ------
      0.043   13.2   0.0      0.087   12.2   0.0    1.4  1  Indigoidine_A   Indigoidine synthase A like protein
       0.12   12.5   0.2        2.1    8.5   0.0    2.4  2  GutM            Glucitol operon activator protein (GutM)
       0.14   12.5   0.1        1.5    9.3   0.0    2.2  2  DUF3991         Protein of unknown function (DUF3991)


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.5   1.3e-48   3.9e-45       1     224 [.      38     267 ..      38     268 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 1.3e-48
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-.......EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgv.......kvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvr 92 
                 +++g ++++ Pfsy+d++++++G++  + +aia+ ++        +++++p++ +++ip l++g +D  ++++t + eR+++ +Fs+ +f+ g++llv+
  EHU01608.1  38 IVIGHRESSVPFSYYDNQQKVVGYSQAYSNAIADAIKAklnkpdlQIKMIPITSQNRIPLLQNGTYDYECGSTTNNLERQKQAAFSDTIFVIGTRLLVK 136
                 789**********************996666666555545556555666668*********************************************** PP

                 ETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC...TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   SBP_bac_3  93 kkdaskissiksladLkgkkvgvqagstaeellkeelkk...gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseey 187
                 k++      ik+++ Lkgk+v+v+ g+t+e ll + + +   +++i++ +++ + ++ L++gr+ a+++d++ la+  +k ++++  ++ + p s+e y
  EHU01608.1 137 KGS-----PIKDFDVLKGKTVVVTSGTTSEVLLHKLNDEkkmDMRIISAKDHGDSFRTLETGRAVAFMMDDALLAGERAKAKKPDDWVIiGTPQSKEAY 230
                 875.....488888****************99877555577799999*****************************99999999999999********* PP

                 EEEEETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 188 aiavrkgdseLrkainkalaelkadgtlakisekWfg 224
                 ++++rk+d++++k +++++a+ +++g+ +k  + Wf+
  EHU01608.1 231 GCMLRKDDPQFKKLVDDTIAKAQTSGQAEKWFDTWFK 267
                 ************************************7 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.16   4.9e+02      92     150 ..      55     112 ..      19     128 .. 0.72
   2 !   15.2   0.1   5.1e-06     0.015      75     141 ..     131     195 ..      77     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.16
                 TTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETT CS
        NMT1  92 kGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyen 150
                 + k +gy++   ++a+ +a+ ak +    ++++++++  + ++ l +g+ D   g  +n
  EHU01608.1  55 QQKVVGYSQ-AYSNAIADAIKAKLNKPDLQIKMIPITSQNRIPLLQNGTYDYECGSTTN 112
                 557777777.5777777777777777777888888877777777777777777766655 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.1e-06
                 EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSS CS
        NMT1  75 sglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkv 141
                 + l+v+k+s+ik++  LkGk++ ++ +  ++ ll++l  ++ +d+  + + +  g+s+   l tg++
  EHU01608.1 131 TRLLVKKGSPIKDFDVLKGKTVVVTSGTTSEVLLHKLNDEKKMDMRIISAKDH-GDSF-RTLETGRA 195
                 67899*********************9****************8888877666.5554.47777766 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.2e-06    0.0065      86     227 ..     130     262 ..      62     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-06
                     EEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHT CS
  Phosphonate-bd  86 rsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkd 180
                      + ++v+++s+i+ ++ Lkgkt++++s + ts   v ++ L +e+++    d++   +++h  + + +  g+a a  +++  l   +a+ + ++d
      EHU01608.1 130 GTRLLVKKGSPIKDFDVLKGKTVVVTSGT-TS--EVLLHKLNDEKKM----DMRIISAKDHGDSFRTLETGRAVAFMMDDALLAGERAK-AKKPD 216
                     56699********************8765.44..3444555444444....46677889*************99888888888887777.5799* PP

                     TEEEEEEEEEEE--EEEEETTS-HHHHHHHHHHHHH---SHHHHHHH CS
  Phosphonate-bd 181 elrviassppipndpvvvrkelseelkekiqdallslaeteegkkll 227
                     + ++i + +   +++ + rk+ ++++k+ + d + +++++ +  k +
      EHU01608.1 217 DWVIIGTPQSKEAYGCMLRKD-DPQFKKLVDDTIAKAQTSGQAEKWF 262
                     ******9999999******99.9999988888888777654444444 PP

>> Indigoidine_A  Indigoidine synthase A like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05     0.087     147     208 ..      16      77 ..       9     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                    ESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B--.EE-SHHHHHHHHHHHH CS
  Indigoidine_A 147 caGvksiLdiprtleyLetqgvpvvtyktdefpaFytresgvkvplrvesaeeaAkllkake 208
                    +aG+ +  d+  tl  ++  gv v++ +++++p  y ++ +  v ++    + +A+++kak 
     EHU01608.1  16 AAGAAQAEDLSVTLKKINDSGVIVIGHRESSVPFSYYDNQQKVVGYSQAYSNAIADAIKAKL 77 
                    68999999*************************99999999999999999999***999875 PP

>> GutM  Glucitol operon activator protein (GutM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00071       2.1       5      45 ..       6      46 ..       3      63 .. 0.89
   2 ?    1.4   0.1      0.11   3.4e+02      54      76 ..     133     155 ..     112     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00071
        GutM  5 illiawllqillglfQiknfnkalkelrkkgkvaiGrkkgr 45
                ++l ++ll ++ g  Q  +++ +lk+++++g + iG++++ 
  EHU01608.1  6 VALSLLLLSAAAGAAQAEDLSVTLKKINDSGVIVIGHRESS 46
                5678899*****************************98764 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
        GutM  54 lavdedgiivearvmkGvTvfar 76 
                 l v +   i+++ v+kG Tv   
  EHU01608.1 133 LLVKKGSPIKDFDVLKGKTVVVT 155
                 4567788899*********9865 PP

>> DUF3991  Protein of unknown function (DUF3991)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00049       1.5      14      46 ..      29      62 ..      26      74 .. 0.80
   2 ?    0.7   0.0      0.24   7.1e+02       8      54 ..     172     227 ..     167     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00049
     DUF3991 14 iaefaekkllyedeyg.NavFvykDengkvvgae 46
                +++   ++++ ++ ++ ++ F+y+D ++kvvg+ 
  EHU01608.1 29 LKKINDSGVIVIGHREsSVPFSYYDNQQKVVGYS 62
                66666778888877762666************96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
     DUF3991   8 kisreiiaefaekkllyedeygNav.FvykD........engkvvgaekrgttyek 54 
                 k +  ii++  + +  ++ e g av F++ D        ++ k+  + + gt++ k
  EHU01608.1 172 KMDMRIISAKDHGDSFRTLETGRAVaFMMDDallageraKAKKPDDWVIIGTPQSK 227
                 56667777777777778888876663555558888887777777777777774444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2297.22
//
Query:       EHU01609.1  [L=56]
Description: hypothetical protein CKS_3741 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.2    8.7   6.1        1.2    8.8   6.1    1.1  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.1   6.4e-05       1.2       6      43 ..       4      41 ..       1      54 [. 0.58

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 6.4e-05
     DUF4131  6 alvllalllllllllllllrrrprrrvlllllllllla 43
                 l+ll+lllllllllll+++r  ++  + + ++++ ++
  EHU01609.1  4 TLLLLLLLLLLLLLLLLQSNRPFTPLSFYSGTMIAKCF 41
                55666666666666666655544444455555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 426.37
//
Query:       EHU01610.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01610.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01610.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01610.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01610.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 848.05
//
Query:       EHU01611.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHU01611.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 923.86
//
Query:       EHU01612.1  [L=169]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-14   51.5   0.5    2.5e-13   50.2   0.5    1.8  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.1e-11   45.3   8.7    2.3e-11   44.3   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
     0.0023   18.2   5.4      0.023   15.0   0.6    2.7  2  Csm1_N           Csm1 N-terminal domain
     0.0025   17.6   5.8     0.0034   17.2   5.8    1.1  1  FAM184           Family with sequence similarity 184, A and B
     0.0027   16.3   5.8     0.0028   16.3   5.8    1.0  1  FUSC             Fusaric acid resistance protein family
     0.0093   15.2   2.5      0.014   14.6   2.5    1.3  1  Phage_HK97_TLTM  Tail length tape measure protein
  ------ inclusion threshold ------
      0.013   15.2   2.5       0.18   11.5   0.4    2.2  2  LXG              LXG domain of WXG superfamily
      0.017   14.7   1.2      0.018   14.7   1.2    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
      0.018   14.8   9.9      0.024   14.4   9.9    1.1  1  ERM              Ezrin/radixin/moesin family
      0.021   14.0   2.2      0.022   14.0   1.4    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.066   13.3  10.4        0.1   12.6  10.4    1.2  1  DHR10            Designed helical repeat protein 10 domain
      0.084   13.1   1.5         15    5.9   0.2    2.7  3  DUF948           Bacterial protein of unknown function (DUF94
       0.09   12.9   0.2       0.24   11.5   0.2    1.8  1  Zn-ribbon_8      Zinc ribbon domain
      0.098   12.5   2.3       0.14   11.9   2.3    1.2  1  RD3              RD3 protein
       0.12   12.4   0.6        6.4    6.9   0.1    2.6  2  G-gamma          GGL domain
       0.15   12.3   5.5       0.27   11.5   5.5    1.4  1  Troponin         Troponin
       0.19   11.0   2.9       0.26   10.5   2.9    1.1  1  TMPIT            TMPIT-like protein
        0.2   11.2   0.7       0.44   10.1   0.1    1.8  2  DUF3145          Protein of unknown function (DUF3145)
       0.23   11.7  10.3       0.62   10.3   2.1    2.1  2  ATG16            Autophagy protein 16 (ATG16)
       0.27   10.9  10.4       0.57    9.8  10.4    1.5  1  Lebercilin       Ciliary protein causing Leber congenital ama
       0.29   11.5   7.0      0.071   13.4   3.0    2.0  2  HalX             HalX domain
       0.39   10.2   7.5        1.1    8.7   7.5    1.7  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
       0.54   10.1   3.3        4.3    7.2   0.1    2.1  2  Mt_ATP-synt_D    ATP synthase D chain, mitochondrial (ATP5H)
       0.79    9.8   9.9       0.93    9.6   0.3    2.8  3  DUF1192          Protein of unknown function (DUF1192)
        0.8    9.5   4.2        1.6    8.5   4.2    1.5  1  USP8_interact    USP8 interacting
       0.82   10.0   7.4        1.2    9.5   7.4    1.2  1  OmpH             Outer membrane protein (OmpH-like)
       0.82   10.3   9.6    4.5e+02    1.6   9.6    2.8  1  SlyX             SlyX
        1.6    8.8   8.6          3    7.9   0.5    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
        6.2    6.3   7.8         12    5.4   7.5    1.5  1  HAUS6_N          HAUS augmin-like complex subunit 6 N-terminu
        7.4    7.2  13.1        7.8    7.1   2.2    2.6  2  MerR-DNA-bind    MerR, DNA binding


Domain annotation for each model (and alignments):
>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.5   4.2e-16   2.5e-13       1      42 [.     128     168 ..     128     169 .] 0.97

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 4.2e-16
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaC 42 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC
  EHU01612.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLAC 168
                 79*******99******.************************ PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   8.7   3.8e-14   2.3e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.8e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01612.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.6   3.8e-05     0.023      22      55 ..      23      56 ..      12      71 .. 0.82
   2 ?    4.7   0.8     0.062        37      33      53 ..      71      91 ..      64      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-05
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHU01612.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888899************************985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.062
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01612.1 71 ARQVREAEERISALQEEMAEV 91
                578899999999**9999986 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   5.8   5.8e-06    0.0034     114     196 ..      10      96 ..       7     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.8e-06
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01612.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 67888888777776555777788***************9862578999**********************************99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   5.8   4.7e-06    0.0028     213     295 ..       4      92 ..       1     131 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.7e-06
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01612.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 44889***********************************999**********999996667888888888888888888877766441 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.5   2.3e-05     0.014      47     106 ..      34      90 ..      18      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.3e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01612.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      677789*****************************9888...899************985 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4    0.0003      0.18     152     191 ..      17      56 ..       4      65 .. 0.86
   2 ?    4.0   0.2      0.06        36      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHU01612.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************85 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.06
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01612.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 57788888899999999999999999999877666 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.2   2.9e-05     0.018     144     229 ..      10      96 ..       3     164 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.9e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e    ++
    EHU01612.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE----QH 96 
                   3344445555555556666666778899999999998888665543889999999999999999*********999988443331....22 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   9.9     4e-05     0.024      17     100 ..       5      90 ..       3     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-05
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01612.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66889999999************************************9999877335577789*******************9875 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.4   3.7e-05     0.022      24      76 ..      37      91 ..      32      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01612.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEV 91
                578***************8777443335566677788888999********9986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  10.4   0.00017       0.1      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01612.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.041        24      23      69 ..      11      56 ..       9      59 .. 0.81
   2 ?    5.9   0.2     0.025        15      25      55 ..      64      94 ..      50     100 .. 0.73
   3 ?   -0.7   0.0         3   1.8e+03      56      77 ..     138     159 ..     135     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.041
      DUF948 23 klkktldeaaatieelekqvdpilkevedllakvnelledvneklek 69
                +l+ +l+e ++ti+++ +  + +++ v++  +++n+ l+ +  kl++
  EHU01612.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINR-LKALVAKLQR 56
                678899999999999999999999999999999999.5555556665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.025
      DUF948 25 kktldeaaatieelekqvdpilkevedllak 55
                +k+ +++a++++e e+++ ++ +e++++l +
  EHU01612.1 64 EKLREKTARQVREAEERISALQEEMAEVLGE 94
                5666777778888888888888887777765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 3
      DUF948  56 vnelledvneklekvdplteav 77 
                  n+l  dv+e+le + + ++ +
  EHU01612.1 138 LNALGCDVSEQLELISSAFKVI 159
                 6888889999999999888755 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2    0.0004      0.24      23      36 ..     125     138 ..     118     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0004
  Zn-ribbon_8  23 dapltaCPeCgsev 36 
                   +++t+CP+Cg+e+
   EHU01612.1 125 SPAETTCPACGGEL 138
                  467899*****976 PP

>> RD3  RD3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.3   0.00024      0.14      45     127 ..      16      95 ..       7      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
         RD3  45 keeeerkaetgvDYswlastprkrkqisaserleLEelCakikPsecgkvisrfrevlaenevevkeivelfksvlkevleer 127
                  +e++   ++ ++Y++l s+        ase ++L  l ak++  + gk  +++re++a +  e++e +++++  + evl e+
  EHU01612.1  16 LQEQQTTIRKMAEYNRLLSQR---VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQ 95 
                 567777788889******965...455799*************************************9999999999998776 PP

>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3     0.073        44       2      32 ..      35      66 ..      34      73 .. 0.88
   2 ?    6.9   0.1     0.011       6.4      21      52 ..      76     108 ..      61     112 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.073
     G-gamma  2 qlklklkreieqLkkeLkr.erikvSkAceel 32
                q++ ++  ei++Lk  +++ +ri+  k++e+l
  EHU01612.1 35 QRVAAYASEINRLKALVAKlQRIQFGKSSEKL 66
                77889999***********9***999999887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.011
     G-gamma  21 eri.kvSkAceelidYvestkDpllpevwgpps 52 
                 e   ++S   ee+ +   +++Dp+lp + +++s
  EHU01612.1  76 EAEeRISALQEEMAEVLGEQHDPALPQPLRQSS 108
                 334477778899999999********9966655 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.5   0.00046      0.27      46     120 ..       9      97 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00046
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+   f+k + K       +vr  +++      ++  +lge+++
  EHU01612.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9878*******55555553333333344444555566666665 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.9   0.00043      0.26      12      92 ..      13      95 ..       7     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01612.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                556666778899999999999999999999999**********9997744224445555666666566666566777777665 PP

>> DUF3145  Protein of unknown function (DUF3145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.5   1.5e+03     108     127 ..      10      28 ..       8      49 .. 0.71
   2 ?   10.1   0.1   0.00074      0.44     106     149 ..      67     110 ..      61     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
     DUF3145 108 drlrallekaaedeeelaee 127
                 +rlrall++++++ +++a e
  EHU01612.1  10 ARLRALLQEQQTTIRKMA-E 28 
                 689999998866665554.3 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00074
     DUF3145 106 sEdrlrallekaaedeeelaeeldkllGtawDeeL.epfRsageg 149
                  E+  r++ e a+e+ ++l+ee++++lG++ D +L +p R+++  
  EHU01612.1  67 REKTARQVRE-AEERISALQEEMAEVLGEQHDPALpQPLRQSSAR 110
                 5666666665.77999*****************995688888765 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.1     0.001      0.62     109     157 ..       7      55 ..       4      57 .. 0.95
   2 ?    9.0   4.5    0.0025       1.5      24      96 ..      29      94 ..      27     100 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.001
       ATG16 109 eelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlq 157
                 +e ++l++ l+e++++++++ + ++ l+++++  + e++ +++lv +lq
  EHU01612.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQ 55 
                 67899****************************************9998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0025
       ATG16 24 ynrLl.drtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyks 96
                ynrLl +r++a ++e  +l++  a+ +       +  +++++ +   +k++ ++ + e+++++l+ee+ae++ +
  EHU01612.1 29 YNRLLsQRVAAYASEINRLKALVAKLQR-----IQFGKSSEKLR---EKTARQVREAEERISALQEEMAEVLGE 94
                5554325555556665555444333333.....22222222222...2455779****************9765 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  10.4   0.00095      0.57      32     109 ..       7      86 ..       3      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00095
  Lebercilin  32 kEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqe.kerelekklkekea.ellrlkdklkklkk 109
                  En  L++l   q+  ++k  + +  L+q +a   +E+  l++ + k+q  +  + ++kl+ek a +++++++ +++l++
  EHU01612.1   7 DENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRiQFGKSSEKLREKTArQVREAEERISALQE 86 
                 58999999999999999999999999999999999999999998888887344556666666544145555555555554 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       4.6   2.7e+03      43      57 ..      11      25 ..       6      34 .. 0.49
   2 ?   13.4   3.0   0.00012     0.071       2      60 ..      37      97 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.6
        HalX 43 rleelraqldetlde 57
                rl +l ++  +t+  
  EHU01612.1 11 RLRALLQEQQTTIRK 25
                344444444444333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU01612.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   7.5    0.0019       1.1      70     152 ..      13      97 ..       2     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0019
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01612.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666667777776666666777778888888999998888885542278888999************************98766 PP

>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0071       4.3      79     124 ..       5      51 ..       1      56 [. 0.79
   2 ?    3.4   1.0       0.1        62      89     119 ..      60      90 ..      51      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0071
                    ----TTT.THHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-XX CS
  Mt_ATP-synt_D  79 ypedkyt.eevdaeekevkkeikefkeeskkrieelekeleklksll 124
                    yp ++ +  ++ +e+++  ++++e++    +r++ + +e+++lk+l+
     EHU01612.1   5 YPDENARlRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALV 51 
                    555555555566677777888999*******************9986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
                    HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_D  89 daeekevkkeikefkeeskkrieelekelek 119
                     + +++  ++ +  + e+++ri+ l++e+++
     EHU01612.1  60 GKSSEKLREKTARQVREAEERISALQEEMAE 90 
                    5677888899999999999999999999986 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       8.9   5.3e+03      36      47 ..       9      20 ..       7      24 .. 0.70
   2 ?    9.6   0.3    0.0016      0.93      25      45 ..      33      53 ..      32      58 .. 0.90
   3 ?    5.4   1.1     0.032        19      22      37 ..      74      89 ..      73      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8.9
     DUF1192 36 IaRleaaiakkk 47
                 aRl+a +++ +
  EHU01612.1  9 NARLRALLQEQQ 20
                578888777655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0016
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01612.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.032
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01612.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.2    0.0027       1.6       2      49 ..      12      61 ..      11      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0027
  USP8_interact  2 Lrelvqkqqqkiaelkkevaeqkqqlseqkrelellkeyiralrstn..p 49
                   Lr+l+q+qq++i ++ +  +  +q+++    e++ lk++++ l+ ++  +
     EHU01612.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgK 61
                   9***************************************9998776553 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.4     0.002       1.2       9      84 ..      14      93 ..      10     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.002
                HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.....-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e...keekeqelqkkeqelqqkqqqkaqelq 84
                 +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +  + +   +e+ ++++++ e+++ ++q++ a+ l 
  EHU01612.1 14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQFGKsSeklREKTARQVREAEERISALQEEMAEVLG 93
                57777788888899999999*********************976655432566666666677777777774444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   9.6      0.75   4.5e+02      22      53 ..      12      43 ..       7     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.75
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01612.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                66778899999999999999999999776655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5     0.005         3      23      67 ..      11      55 ..       7      60 .. 0.86
   2 ?    4.5   2.2     0.057        34      45      70 ..      63      88 ..      58      91 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.005
  TMF_DNA_bd 23 kLskkelklnntikkLrkknkelekeikelkkkleklekeleele 67
                +L++  +++ +ti k+ + n+ l + ++ + +++++l   +++l+
  EHU01612.1 11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQ 55
                56666788999********************99999999988887 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.057
  TMF_DNA_bd 45 lekeikelkkkleklekeleeleerl 70
                +ek  +++ +++++ e+ ++ l+e++
  EHU01612.1 63 SEKLREKTARQVREAEERISALQEEM 88
                56666666666666666666666655 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.5      0.02        12     155     226 ..      11      76 ..       7      94 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.02
     HAUS6_N 155 slrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkae.........keaakkekkeasedaeeekikkvrn 226
                 +lr +l+e ++    ++k+ e+ +ll++++ + ++e+ +l+a++ +          +            + +e+  ++vr+
  EHU01612.1  11 RLRALLQEQQTT---IRKMAEYNRLLSQRVAAYASEINRLKALVAKLqriqfgkssE------------KLREKTARQVRE 76 
                 566677777777...999999999999999999999999999886334444443330............333334444433 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.9     0.045        27      21      64 ..      13      56 ..       9      57 .. 0.85
   2 ?    7.1   2.2     0.013       7.8      32      60 ..      61      89 ..      58      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.045
                   HHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 21 relLalyddrappcqdvrallarklaeleeriaeLqalraeLaa 64
                   r+lL+ ++   +  ++ ++ll +++a     i++L+al a L++
     EHU01612.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                   788866666777778888***********************997 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.013
                   TBHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 32 ppcqdvrallarklaeleeriaeLqalra 60
                   ++++++r+ +ar++ e eeri +Lq+ +a
     EHU01612.1 61 KSSEKLREKTARQVREAEERISALQEEMA 89
                   6788999*****************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1602  (0.0893524); expected 358.6 (0.02)
Passed bias filter:                      882  (0.049194); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 1370.06
//
Query:       EHU01613.1  [L=117]
Description: hypothetical protein CKS_0040 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-26   90.5  23.3      7e-26   90.2  23.3    1.1  1  FlxA             FlxA-like protein
     0.0012   18.8   1.2     0.0015   18.5   1.2    1.1  1  Peptidase_M16    Insulinase (Peptidase family M16)
     0.0041   15.8   6.1     0.0046   15.6   6.1    1.0  1  FapA             Flagellar Assembly Protein A
     0.0076   15.8   6.1     0.0074   15.8   6.1    1.0  1  Allexi_40kDa     Allexivirus 40kDa protein
  ------ inclusion threshold ------
      0.016   15.6  13.6       0.28   11.6   0.7    2.5  2  LPP              Lipoprotein leucine-zipper
      0.016   15.0   7.0      0.017   14.9   7.0    1.0  1  BBP1_C           Spindle pole body component BBP1, C-terminal
      0.017   15.3   1.4      0.021   15.0   1.4    1.2  1  Cob_adeno_trans  Cobalamin adenosyltransferase
      0.022   14.3   3.0      0.041   13.4   1.6    1.7  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
      0.023   14.8  14.5       0.03   14.4  14.5    1.2  1  ADIP             Afadin- and alpha -actinin-Binding
      0.036   13.8   8.7      0.046   13.5   8.7    1.1  1  SKA2             Spindle and kinetochore-associated protein 2
      0.041   14.2   3.8      0.041   14.2   3.8    2.1  2  DUF5082          Domain of unknown function (DUF5082)
      0.058   13.0   9.0      0.064   12.9   9.0    1.1  1  DUF4795          Domain of unknown function (DUF4795)
      0.059   13.5   2.6       0.07   13.2   2.6    1.1  1  MCU              Mitochondrial calcium uniporter
       0.06   12.0   8.3       0.07   11.8   8.3    1.1  1  AAA_13           AAA domain
      0.061   13.5   5.8        0.1   12.8   5.8    1.4  1  DUF2526          Protein of unknown function (DUF2526)
      0.062   12.1   1.7      0.069   11.9   1.7    1.1  1  Fungal_trans_2   Fungal specific transcription factor domain
      0.065   12.5  11.9      0.073   12.4  11.9    1.1  1  HemX             HemX, putative uroporphyrinogen-III C-methyl
      0.067   12.6   6.0      0.087   12.3   6.0    1.3  1  DUF4349          Domain of unknown function (DUF4349)
       0.09   12.1  12.4      0.091   12.0  12.4    1.1  1  DUF3450          Protein of unknown function (DUF3450)
      0.095   12.7   8.5       0.13   12.3   8.5    1.3  1  RRP36            rRNA biogenesis protein RRP36
       0.13   11.8   1.6        1.9    7.9   0.8    2.0  2  BRI3BP           Negative regulator of p53/TP53
       0.13   12.6  14.5        1.7    9.0   0.3    2.2  2  Csm1_N           Csm1 N-terminal domain
       0.14   11.5  12.2       0.19   11.1  12.2    1.2  1  DUF4407          Domain of unknown function (DUF4407)
       0.14   11.2   0.6       0.16   11.0   0.6    1.0  1  IHHNV_capsid     Infectious hypodermal and haematopoietic nec
       0.18    9.7   6.2       0.19    9.6   6.2    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.27   10.3  15.9        0.3   10.2  15.9    1.1  1  SprA-related     SprA-related family
        0.3    9.6   1.5       0.34    9.4   1.5    1.0  1  FUSC             Fusaric acid resistance protein family
       0.32   10.4   6.8       0.38   10.2   6.8    1.1  1  PBP_sp32         Proacrosin binding protein sp32
       0.32   10.2   7.8       0.37   10.0   7.8    1.1  1  Tho2             Transcription factor/nuclear export subunit 
       0.36   10.0   6.3       0.44    9.7   6.3    1.2  1  TMPIT            TMPIT-like protein
       0.41   11.1  12.8       0.92   10.0   0.4    2.2  2  DUF4140          N-terminal domain of unknown function (DUF41
       0.45   10.3  13.3        1.4    8.7  13.1    1.7  2  DUF724           Protein of unknown function (DUF724)
       0.46   11.1  12.7       0.79   10.4   0.2    2.2  2  SlyX             SlyX
       0.49   10.8   8.5          5    7.6   0.1    2.9  2  DASH_Hsk3        DASH complex subunit Hsk3 like
       0.54   10.6   4.6       0.72   10.1   4.6    1.4  1  DUF948           Bacterial protein of unknown function (DUF94
       0.56    9.3   8.9       0.77    8.9   8.9    1.2  1  DUF1682          Protein of unknown function (DUF1682)
        0.7    9.8   3.8       0.33   10.9   1.9    1.4  1  ProSAAS          ProSAAS precursor
       0.79   10.1   7.0        1.6    9.1   6.8    1.6  1  CCDC-167         Coiled-coil domain-containing protein 167
       0.83   10.2   9.1         10    6.7   6.0    2.2  2  MerR-DNA-bind    MerR, DNA binding
        1.2    9.5  19.3        2.4    8.5  15.1    2.0  2  YlqD             YlqD protein
        1.3    7.8   9.3        1.5    7.6   9.3    1.1  1  FemAB            FemAB family
        1.4    9.4  11.6        2.5    8.6  11.5    1.6  1  DUF3682          Protein of unknown function (DUF3682)
        1.5    8.6  17.9          2    8.3   1.7    2.5  2  DivIC            Septum formation initiator
        1.6    9.0  12.8        2.3    8.5   2.1    2.1  2  Spc24            Spc24 subunit of Ndc80
        1.7    8.8  12.4          4    7.6  12.4    1.7  1  Med9             RNA polymerase II transcription mediator com
        1.7    9.7   7.7         28    5.9   0.1    2.2  2  DUF5320          Family of unknown function (DUF5320)
        2.3    7.1   4.5          3    6.7   4.5    1.1  1  MMPL             MMPL family
        3.3    6.2  10.2        3.3    6.2   0.2    2.0  2  DUF3138          Protein of unknown function (DUF3138)
        3.4    8.3   8.7        6.3    7.5   8.7    1.4  1  YabA             Initiation control protein YabA
        4.3    7.5  14.3        1.7    8.8   2.3    2.2  2  Swi5             Swi5
        7.6    6.7  11.5        3.9    7.7   0.4    2.2  2  DUF2802          Protein of unknown function (DUF2802)
          9    7.2  18.7         19    6.2   0.1    2.2  2  DUF5339          Family of unknown function (DUF5339)


Domain annotation for each model (and alignments):
>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2  23.3     2e-28     7e-26       2     100 ..      13     109 ..      11     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2e-28
        FlxA   2 ssssasssssssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqegvnkpsa 100
                 s s++ ++s ss++a+qiasL+kQi++l++qLk+l+++++lt+eekkkqq++i+aQIq+l+aQI+qlq+++++ka+ kq++++ ++ +  ++gvn+p++
  EHU01613.1  13 SGSTSDTTSASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTVS--ADGVNRPTQ 109
                 56788899999**************************************************************************998..9******97 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.2   4.3e-06    0.0015      61     146 ..      14     100 ..       6     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.3e-06
                    TCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHH.HHHHHHHHHHHHTTTSGGGSHSS CS
  Peptidase_M16  61 GgslnAttsrentvYyvevlskdlekaldvladvfkaplleesevererkvvekeveavdaep.ekvveenlhaaayrekalgrsll 146
                    G +++ t+    t+ ++ +l+k++  + d l +   + +l+ +e +++++++++++++++a+  +  + e+++a a++ ++ g++++
     EHU01613.1  14 GSTSDTTSASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIqQLQRKEQQKAEAKQAEKEGKTVS 100
                    5566677778889999999********************************************788899999999999999888776 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.1   1.3e-05    0.0046     340     419 ..      24     101 ..       4     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
        FapA 340 keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea.kikv 419
                 ++   ++ +l++++ +l++++k+l + k     ++ekk+q++ ++ + + l+ ++++l+++ ++  e  +   +e+  +++
  EHU01613.1  24 SDTAAQIASLNKQISRLNDQLKSLGDDK--TLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAE-KEGkTVSA 101
                 6677888888999999999988888833..445789999999999999**********99999888888877.44436655 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   6.1   2.2e-05    0.0074      74     168 ..      24     115 ..       1     117 [] 0.59

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-05
  Allexi_40kDa  74 lsqttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelsssetsesegPsssptkassaeaaasedLpi 168
                     ++++++ l +++ +l+++l++l ++++ +++++++++d  +  +++++e ++++l++k ++ +++++ e+eg ++s    +  +++ +++L +
    EHU01613.1  24 SDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQD-TIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTVSADGVNR-PTQ-NNQLDV 115
                   2244567777777777777777777766655555444444.4566788888888888888766666665555555555444433.332.333555 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   0.00081      0.28       2      28 ..      30      56 ..      29      64 .. 0.71
   2 ?    8.7   5.8    0.0066       2.3       3      35 ..      63      95 ..      61      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00081
         LPP  2 ldeLssqVsqLkskvdqlssdvnsaka 28
                +  L++q+s+L+++ ++l +d + + +
  EHU01613.1 30 IASLNKQISRLNDQLKSLGDDKTLTTE 56
                677899999999999999888554444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0066
         LPP  3 deLssqVsqLkskvdqlssdvnsakaaaqaake 35
                d + +q++ L+++++ql+ + ++ ++a qa ke
  EHU01613.1 63 DTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKE 95
                78999**************98887776666554 PP

>> BBP1_C  Spindle pole body component BBP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   7.0     5e-05     0.017      92     185 ..      21     114 ..       2     117 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5e-05
      BBP1_C  92 nlekqlvdqaiekdreikkleeklldlelrnkeleekreidkikYesrikdLerqllereneikdtssssnafstseyrkkeelsskdenqsld 185
                 +  +   +q ++ +++i+ l+++l +l   ++  +e+++++++  +++i+ Le+q ++ +++ +++   ++a ++ ++ +++  +  ++n++ld
  EHU01613.1  21 SASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTVSADGVNRPTQNNQLD 114
                 4444555799999***************99999999*****************99988877777888888888888888889999999999988 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.4     6e-05     0.021      37     104 ..      22      85 ..       3     106 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6e-05
                      HHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHH..HHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS-- CS
  Cob_adeno_trans  37 saiglarallaeeeeelkeaLeeiqneLfdlgae..latpekkkekkkiteeeveelekeideleaelpp 104
                      +    a++      ++l+++++++ ++L +lg +  l t+ekkk++ +i+++ ++ le++i++l+ + ++
       EHU01613.1  22 ASSDTAAQ-----IASLNKQISRLNDQLKSLGDDktLTTEEKKKQQDTIKAQ-IQVLEAQIQQLQRKEQQ 85 
                      44444442.....3468899999999*****998445555666666666655.***********955443 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.74   2.6e+02      42      80 ..      21      59 ..       3      69 .. 0.66
   2 ?   13.4   1.6   0.00012     0.041      50     102 ..      64     117 .]      56     117 .] 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.74
  tRNA-synt_1_2 42 apehplveklaekkkelaafieevkkksesereletkek 80
                   +++++ + ++a+ +k+++++ +++k+  + ++ +++++k
     EHU01613.1 21 SASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKK 59
                   566667778888888888888888777666653333333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
  tRNA-synt_1_2  50 klaekkkelaafieevkkksesereletkekeGvftglk.aihPitgekipiwv 102
                    +++++ + l+a i+++++k+++++e++++ekeG + ++  +  P +++++++++
     EHU01613.1  64 TIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTVSADgVNRPTQNNQLDVYI 117
                    45777788999**********************97776615679*********8 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  14.5   8.8e-05      0.03      62     129 ..      23      90 ..      15     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.8e-05
        ADIP  62 irkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqik 129
                  ++  a i++l+++i+rl +ql++l    +l ++++++++ ++k+++q l  + ++lqr +++ ++ k
  EHU01613.1  23 SSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAK 90 
                 5667799****************************************************987766555 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.7   0.00013     0.046      35     103 ..      25      94 ..      17     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00013
        SKA2  35 dnaeNpvkLlerlkkvkeelqaLkeqceellaekkelidkirttlvanrellqqLqasaelppls.eeeq 103
                 d a   + L +++++++++l++L ++ +   +ekk+  d+i++++      +qqLq++ + +++  ++e+
  EHU01613.1  25 DTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAkQAEK 94 
                 44458899************************************************99955555435554 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.8   0.00012     0.041       6      53 ..      17      64 ..      13      67 .. 0.81
   2 ?    3.2  10.9       0.3     1e+02       9      44 ..      59      94 ..      54     109 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 0.00012
     DUF5082  6 sklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekp 53
                s+  ++ +++ ++ia+l+++I+rL    ++l d k  + ++kkk++++
  EHU01613.1 17 SDTTSASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDT 64
                56678899*****************88888888887777777777765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.3
     DUF5082  9 qaqiaelrseiaaleekIerLkeaktklsdekeslk 44
                ++q++  +++i++le +I+ L++  ++  ++k++ k
  EHU01613.1 59 KKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEK 94
                789999****************76666555555444 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   9.0   0.00018     0.064       4      70 ..      25      95 ..      17     117 .] 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00018
     DUF4795  4 nsaellkklqeaieklqeelekleekvkelekrledkek....klealkkqieelekvkadkeeveeelae 70
                ++a  +  l+++i+ l ++l++l + ++ + ++++++++    ++++l+ qi++l+ + + k e +++++e
  EHU01613.1 25 DTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDtikaQIQVLEAQIQQLQRKEQQKAEAKQAEKE 95
                45566999**************9988887777777666522227889************999999999875 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.6    0.0002      0.07      27      86 ..      25      91 ..       3     104 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0002
                XXXXXXXXXXXXXXXXX-SS........SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGG CS
         MCU 27 eeakvllrvkqlvkalesal........nveeeqlkkereleekleelreelepleekkeeidekAer 86
                ++a+++ ++++ +++l++ l         ++ee++k++ +++++++ l++++++l++k++  +++A++
  EHU01613.1 25 DTAAQIASLNKQISRLNDQLkslgddktLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQ-QKAEAKQ 91
                345666666666666666667777777777788899999999999999999999998443.3333333 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   8.3    0.0002      0.07     290     353 ..      28      92 ..      13     113 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
      AAA_13 290 kliekveskkselleklkavsdeasensa.feedkeelkaeaealeeqLkglqraleaKrkepfk 353
                   i+++++++s+l ++lk++ d++++  +  +++++++ka++++le+q+++lqr+ ++K +   +
  EHU01613.1  28 AQIASLNKQISRLNDQLKSLGDDKTLTTEeKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQA 92 
                 34555566666666666666555444433244445556666666666666666665555543333 PP

>> DUF2526  Protein of unknown function (DUF2526)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.8   0.00029       0.1      17      66 ..      34      88 ..      20     100 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00029
     DUF2526 17 esviahmnellialsddaqlsreeryqqqqrlrtaiahhGrq.....ekedaeae 66
                ++ i+ +n+ l +l dd  l+ ee+ +qq  +++ i     q     +ke+++ae
  EHU01613.1 34 NKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQiqqlqRKEQQKAE 88
                45699************************99988876544430001033333332 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.7    0.0002     0.069     197     254 ..      31      95 ..      16     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
  Fungal_trans_2 197 illiseisrLarekrsarkd.......seleplsileeaseleqrllswkprssdlepdldeter 254
                      +l ++isrL  +++s  +d       +++++++i+++++ le ++++++ ++++  + ++++++
      EHU01613.1  31 ASLNKQISRLNDQLKSLGDDktltteeKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKE 95 
                     555678999999999999999999999999*****************999998888887777765 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4  11.9   0.00021     0.073      31      91 ..      24      92 ..      10     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
        HemX 31 qeltaevaelqqqlaaleqqlaq........veaekeqkqeleerlqqlaeklealekeleqlqkqlee 91
                +++ a++a+l++q++ l++ql++        +e++k+q++++++++q l+ ++++l+++ +q++++ ++
  EHU01613.1 24 SDTAAQIASLNKQISRLNDQLKSlgddktltTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQA 92
                456778888999999999998888888888778888888888999999999999998877766655443 PP

>> DUF4349  Domain of unknown function (DUF4349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.0   0.00025     0.087      79     145 ..      14      82 ..       4     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
     DUF4349  79 tsaeDVTeqyvDleaRlkaleasedrllallek..aksvedlleiereLsevqaeieslegqlryLdnq 145
                  s++D T+   D+ a++++l+++  rl + l+   ++++    e +++  +++a+i  le+q+++L+++
  EHU01613.1  14 GSTSDTTSASSDTAAQIASLNKQISRLNDQLKSlgDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRK 82 
                 589****************************9944455555556667888999**********999875 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  12.4   0.00026     0.091      15      97 ..      13      95 ..       1     114 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00026
     DUF3450 15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeiere 97
                + + +++ ++++ + a+ a+ +k+i++l+d+ ++l ++ +  +ee+++ +   + + +++++q q++++ e+q++e+++ e+e
  EHU01613.1 13 SGSTSDTTSASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKE 95
                56677777888888888889999999999999999999999999999999999999999999999999999999999998876 PP

>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   8.5   0.00036      0.13      60     120 ..      35     103 ..      18     108 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00036
       RRP36  60 kEleelkkelk.........kekdkeeekeelkrelqrlesrekerekkererevlkelkkeekekvkeg 120
                 k ++ l+++lk         +e++ +++++ +k+++q le++ ++ ++ke++++  k+ +ke k    +g
  EHU01613.1  35 KQISRLNDQLKslgddktltTEEK-KKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTVSADG 103
                 456677777775554433322333.78899*******************999999888888877655555 PP

>> BRI3BP  Negative regulator of p53/TP53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.19        64     154     178 ..      19      43 ..       8      48 .. 0.71
   2 ?    7.9   0.8    0.0057       1.9     151     179 ..      55      83 ..      44      84 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.19
      BRI3BP 154 seesgasleakvrsLerqvrelnkr 178
                 +++ ++ + a++ sL++q+  ln +
  EHU01613.1  19 TTSASSDTAAQIASLNKQISRLNDQ 43 
                 3456777888888999998888865 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0057
      BRI3BP 151 aksseesgasleakvrsLerqvrelnkrq 179
                 ++++++++ +++a+++ Le q+++l++++
  EHU01613.1  55 TEEKKKQQDTIKAQIQVLEAQIQQLQRKE 83 
                 4555678999****************986 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0051       1.7      40      70 .]      27      57 ..      19      57 .. 0.85
   2 ?    6.8  10.8     0.025       8.5      35      69 ..      54      88 ..      51      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0051
      Csm1_N 40 dqeiesLkeqlaeleekvkeleerrkkqeEe 70
                  +i sL +q+  l+ ++k+l ++++   Ee
  EHU01613.1 27 AAQIASLNKQISRLNDQLKSLGDDKTLTTEE 57
                56899***************99999888775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.025
      Csm1_N 35 kletkdqeiesLkeqlaeleekvkeleerrkkqeE 69
                ++e k+++  ++k+q++ le+++++l+ ++++++E
  EHU01613.1 54 TTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAE 88
                56788888899999999999999999999999988 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  12.2   0.00055      0.19     140     222 ..      21      97 ..       5     114 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00055
     DUF4407 140 aqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelael 222
                 +  ++  a+i+++++++++l++++++  d ++   tt  + k +  ++ kaq++ ++a++++l++k  ++++ +a++ae+++ 
  EHU01613.1  21 SASSDTAAQIASLNKQISRLNDQLKSLGDDKT--LTT--EEKKKQQDTIKAQIQVLEAQIQQLQRK--EQQKAEAKQAEKEGK 97 
                 44445556666666666666666665544322..211..233444567888888888888888888..777777776666653 PP

>> IHHNV_capsid  Infectious hypodermal and haematopoietic necrosis virus, capsid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   0.00048      0.16     132     210 ..      13      93 ..       7     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00048
                   TTS-EEEEE-SSS--..-EEEEE--S---SEEEESSTT--HHHHHHS-EEEES-TT--STTHHHHH-SEEEEE-TT-EEEE CS
  IHHNV_capsid 132 sggtsfetltftdtp..yleifkdttglhnqlstkeadvtlakwiqnpqlvtvqstaanyedpiqqfgfmeqmrtgdrkay 210
                   sg ts  t + +dt      + k+ + l +ql +   d tl+   ++ q  t+++     e  iqq+   eq ++  ++a 
    EHU01613.1  13 SGSTSDTTSASSDTAaqIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAE 93 
                   78888888888887622467899*************************************************998776663 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.2   0.00055      0.19      35     108 ..      26      99 ..       3     115 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00055
  V_ATPase_I  35 merklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkav 108
                    ++  l+++i++l+++  +  ++++ ++++++k+ d+++++++ le+++++l++++++  + ++  +e k v
  EHU01613.1  26 TAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTV 99 
                 22333333333333333333333333333333333333333333333333333333333333333333332222 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  15.9   0.00086       0.3      71     162 ..       5      96 ..       1     114 [. 0.49

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00086
  SprA-related  71 rdatasastsesgsvsdtikpss...aeqanekadfaaifgqeeesasaakekeqqkkdeqsqqerekvaqeqkqkqvfaketqeSnaqqsqeEn 162
                      t s++   sgs+sdt ++ss   a+ a ++++ + +  q ++         + kk++q++ + + ++ e + +q++ ke+q+++a+q+++E 
    EHU01613.1   5 STSTPSIG---SGSTSDTTSASSdtaAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEG 96 
                   22333333...444444444433111455556666666666655533222223333334444444555555555566667888888888888773 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.5   0.00098      0.34     235     298 ..      23      88 ..      13     108 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00098
        FUSC 235 lsslarllarlraeeaaavpelaallaelaal..eaaaaaealeaalaalrarlralrraleadad 298
                  s +a + a l+++ ++  ++l+ l ++      e+++++++++a+++ l+a++++l+r ++++a+
  EHU01613.1  23 SSDTAAQIASLNKQISRLNDQLKSLGDDKTLTteEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAE 88 
                 444444444444444444444444444433336677788888899999999999888888883332 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.8    0.0011      0.38     153     241 ..      15      97 ..       2     105 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0011
    PBP_sp32 153 ivteatstekeafqpwperllnnveellksslslggkekapeakpkeeqllekkqeqleehkteekkkqeeqeeeekeeeakqeegeGe 241
                   +++ts+  ++       l++++ +l    +slg  +  +   +k++q   k q q+      e++ q+ q  e+++ eakq e eG+
  EHU01613.1  15 STSDTTSASSDT-AAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVL-----EAQIQQLQRKEQQKAEAKQAEKEGK 97 
                 334444444442.3334567778888888889995544444433333332334444443.....4455555555555555566555554 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   7.8    0.0011      0.37      24     100 ..      30     104 ..      15     116 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
        Tho2  24 keqYekeieklkseieelakdrsderaaakkkkkekkrlkeliekLeeEkkeqi.ehvekvkkrLkeekkswfkndek 100
                  ++ +k+i++l+ ++++l   ++d++ ++++kkk+++ +k++i+ Le+  ++ + ++++k +++ +e+  + +++d  
  EHU01613.1  30 IASLNKQISRLNDQLKSL---GDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQrKEQQKAEAKQAEKEGKTVSADGV 104
                 444566777777777777...555578999999999999999999998866544044444444444444455554444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.3    0.0013      0.44      29      88 ..      20      82 ..      10     111 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
       TMPIT 29 sklqskcskeikkqkkrlkelksslkklkksvk...eeeeeeveelkeelkerkkvlkevesl 88
                ++  s+++ +i++ +k++++l+++lk+l  +++   ee++++ +++k++++  ++++++++  
  EHU01613.1 20 TSASSDTAAQIASLNKQISRLNDQLKSLGDDKTlttEEKKKQQDTIKAQIQVLEAQIQQLQRK 82
                555566666666666666666666666655533333555556666666666666666555443 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4    0.0027      0.92      60      89 ..      22      52 ..       4      59 .. 0.59
   2 ?    3.8   8.9      0.23        79      63      89 ..      59      91 ..      49      99 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0027
     DUF4140 60 reaeeee.lkalraeleeledelaaledela 89
                 ++++++ +++l++++ +l+d+l+ l d+++
  EHU01613.1 22 ASSDTAAqIASLNKQISRLNDQLKSLGDDKT 52
                2222222277777777777777777766665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.23
     DUF4140 63 eee......elkalraeleeledelaaledela 89
                +++      +++ l+a++++l+++ ++  ++++
  EHU01613.1 59 KKQqdtikaQIQVLEAQIQQLQRKEQQKAEAKQ 91
                111112332355555555555555555444444 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.092        32     119     150 ..      17      48 ..      12      57 .. 0.79
   2 ?    8.7  13.1     0.004       1.4      92     158 ..      31      95 ..      25     115 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.092
      DUF724 119 eeeesekrkleeeidelekkilelerqlallk 150
                 ++ +s+++   ++i+ l+k+i++l+ ql++l 
  EHU01613.1  17 SDTTSASSDTAAQIASLNKQISRLNDQLKSLG 48 
                 56678888899999999999999999998775 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.004
      DUF724  92 srlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadk 158
                 + lnk +s  ++q k l   k l   +ee+++++  ++++i+ le +i++l+r+++++ e k+a+++
  EHU01613.1  31 ASLNKQISRLNDQLKSLGDDKTLT--TEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKE 95 
                 455555565666666666666654..455566667789*****************866655544433 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2    0.0023      0.79      30      55 ..      27      52 ..      21      60 .. 0.79
   2 ?    3.3   8.2      0.38   1.3e+02      16      46 ..      62      92 ..      57     107 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0023
                HHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 30 qqqidrlqrqlrllaerlkeleessg 55
                + qi+ l +q+ +l+++lk+l +++ 
  EHU01613.1 27 AAQIASLNKQISRLNDQLKSLGDDKT 52
                57999999999999999999987754 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.38
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        SlyX 16 edtieeLndvvaeqqqqidrlqrqlrllaer 46
                +dti++  +v+ +q qq++r ++q ++ ++ 
  EHU01613.1 62 QDTIKAQIQVLEAQIQQLQRKEQQKAEAKQA 92
                4444444444444444444444443333333 PP

>> DASH_Hsk3  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1     0.014         5       3      15 ..      36      48 ..      34      56 .. 0.91
   2 ?    4.4   2.5      0.15        50       3      16 ..      68      81 ..      67      94 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.014
   DASH_Hsk3  3 qyshLasqLaqLq 15
                q+s+L+ qL++L 
  EHU01613.1 36 QISRLNDQLKSLG 48
                9*********995 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.15
   DASH_Hsk3  3 qyshLasqLaqLqa 16
                q++ L +q++qLq+
  EHU01613.1 68 QIQVLEAQIQQLQR 81
                89999*******97 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.6    0.0021      0.72      28      79 ..      30      81 ..      18     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0021
      DUF948 28 ldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79
                + +++++i  l++q++++ ++ + ++++ ++ ++ ++ +++ +++ +++++ 
  EHU01613.1 30 IASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQR 81
                67899**************************************999999886 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.9    0.0022      0.77     255     322 ..      54      97 ..      15     101 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0022
     DUF1682 255 rpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKyeekerkkeak 322
                 + e +                        ++q++  +++ +  e+++++l+ +eq+K+e k+++ke k
  EHU01613.1  54 TTEEK------------------------KKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGK 97 
                 22222........................234455666666777777777777777777777777755 PP

>> ProSAAS  ProSAAS precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.9   0.00095      0.33      71     120 ..      60     109 ..      50     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00095
     ProSAAS  71 avqelaralahlleaerqeraraeaqeaedqqarvlaqllrvwgsprasd 120
                   q+  +a   +lea+ q+  r e q+ae +qa    + + + g  r+++
  EHU01613.1  60 KQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEKEGKTVSADGVNRPTQ 109
                 5688899999***********************98888888888777765 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.8    0.0046       1.6       4      67 ..      28      85 ..      24      93 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0046
    CCDC-167  4 seIdkleeklascrerLeaverrlrkeelseeeResleeEeaslkeqleenekeLksLrkeNrk 67
                 +I +l++++++++++L+++     +++l++ee++   + ++++k q++  e + ++L+++ ++
  EHU01613.1 28 AQIASLNKQISRLNDQLKSLGD---DKTLTTEEKK---KQQDTIKAQIQVLEAQIQQLQRKEQQ 85
                5777777777777777777653...5677777665...56699***************765554 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.086        30      41      62 ..      26      47 ..      14      50 .. 0.82
   2 ?    6.7   6.0      0.03        10      31      61 ..      55      85 ..      43      89 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.086
                   HHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 41 larklaeleeriaeLqalraeL 62
                   +a+++a+l+++i +L    + L
     EHU01613.1 26 TAAQIASLNKQISRLNDQLKSL 47
                   57899*******9998776665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.03
                   TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind 31 appcqdvrallarklaeleeriaeLqalrae 61
                   + ++ + ++ ++++++ le++i++Lq+ +++
     EHU01613.1 55 TEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQ 85
                   44445555899**************987665 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.25        87      24      45 ..      25      46 ..      15      52 .. 0.64
   2 ?    8.5  15.1     0.007       2.4      12      54 ..      52      94 ..      50     114 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.25
        YlqD 24 qlqaqieqldkelqqLefqakr 45
                +  aqi  l+k++++L+ q+k 
  EHU01613.1 25 DTAAQIASLNKQISRLNDQLKS 46
                4556666666666666666654 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.007
        YlqD 12 ivTeklKeelqqqlqaqieqldkelqqLefqakrlikeikkqs 54
                 +T + K++ q++++aqi+ l+ ++qqL+ ++++  + ++ ++
  EHU01613.1 52 TLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAEK 94
                5899999*********************988777644443322 PP

>> FemAB  FemAB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   9.3    0.0045       1.5     237     302 ..      23      87 ..      15     103 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0045
       FemAB 237 elnlaeylkelqekleklekklakleekleknpekkkkkklkelekqlaslekelkeaeefiekdg 302
                 + + a+ +++l+++++ l+ +l+ l ++ ++ ++++kkk+ ++++ q++ le +++++++  +++ 
  EHU01613.1  23 SSDTAAQIASLNKQISRLNDQLKSLGDD-KTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKA 87 
                 5566677777777777777777777775.3333366666666677777777777777766444433 PP

>> DUF3682  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  11.5    0.0072       2.5      52     122 ..       6      85 ..       2      96 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0072
     DUF3682  52 nssnttGdsstgdqtpaaaa..annssppegpag.......ttsgtghtrqeeeEeeeenekqqqsdEaQvqqhqqhehp 122
                 +s+ ++G  st d t+a+++  a+ +s+ ++  +          +   t +e++ +++  + q q  EaQ+qq q++e+ 
  EHU01613.1   6 TSTPSIGSGSTSDTTSASSDtaAQIASLNKQISRlndqlksLGDDKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQ 85 
                 4555566666666666654322555565555443000000033344444444444444556677999********99964 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.7    0.0057         2      29      55 ..      26      51 ..      16      61 .. 0.70
   2 ?    2.2  12.8      0.44   1.5e+02      29      57 ..      58      85 ..      50     102 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0057
                HHHHHHHHHHHHHHHHHHHCC-XXXXX CS
       DivIC 29 lqaelaklkaeneeLeaevkdLksded 55
                  a++a+l++++ +L++++k L  d+ 
  EHU01613.1 26 TAAQIASLNKQISRLNDQLKSL-GDDK 51
                5677777777777777777777.4443 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.44
                HHHHHHHHHHHHHHHHHHHCC-XXXXXXX CS
       DivIC 29 lqaelaklkaeneeLeaevkdLksdedyi 57
                ++++ +++ka+++ Lea++++L + ++  
  EHU01613.1 58 KKKQQDTIKAQIQVLEAQIQQL-QRKEQQ 85
                4555555555555555555555.333333 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.1    0.0067       2.3      11      52 ..      21      62 ..      15      69 .. 0.54
   2 ?    4.1   7.8      0.15        53      12      44 ..      61      94 ..      51     116 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0067
       Spc24 11 kelsdleselesleselaelkeeleeleeeseekeservede 52
                 ++sd+ +++ sl+++ ++l+++l+ l + +   ++e ++++
  EHU01613.1 21 SASSDTAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKKQQ 62
                556666666666666666666666666665554222222233 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.15
       Spc24 12 elsdleselesleselaelkeeleeleeesee.k 44
                + + ++++++ le++ ++l+++ ++  e +++ k
  EHU01613.1 61 QQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAeK 94
                3333344444444444444433333333333321 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  12.4     0.012         4      14      78 ..      16      81 ..       3      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.012
        Med9 14 ekdpnlsskdletktgelrhkLkkarelirelpg.idrsveeqeaeieeleeqlakKrelLkkykn 78
                ++d+++ s d+ +++++l++++++   ++++l +    ++ee +++ ++ + q++  ++ ++++++
  EHU01613.1 16 TSDTTSASSDTAAQIASLNKQISRLNDQLKSLGDdKTLTTEEKKKQQDTIKAQIQVLEAQIQQLQR 81
                56667999************************9995666666666666666666666666666654 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.081        28      65      92 ..      20      47 ..       5      53 .. 0.72
   2 ?    5.5   4.0       0.1        36      68      96 ..      55      83 ..      49      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.081
     DUF5320 65 etaeaskeeekelLeeqaeaLeeeleai 92
                ++a++++ ++++ L++q++ L+++l+ +
  EHU01613.1 20 TSASSDTAAQIASLNKQISRLNDQLKSL 47
                4566777778888888888888888765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.1
     DUF5320 68 easkeeekelLeeqaeaLeeeleaikkrl 96
                 ++k+++++ +++q+++Le+++++++++ 
  EHU01613.1 55 TEEKKKQQDTIKAQIQVLEAQIQQLQRKE 83
                56788899999999999999999998765 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.5    0.0086         3       5      85 ..      29     103 ..      24     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0086
        MMPL   5 adaesvkamdrleaafpeeadsdkiivvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDg 85 
                 + a++ k+++rl+ ++++++d dk+ +  +++++++++ +a+ +++++++++l++++++ +e+  +    + +  +vS+Dg
  EHU01613.1  29 QIASLNKQISRLNDQLKSLGD-DKTLT-TEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQA----EKEGKTVSADG 103
                 567778899999999999444.45444.456889999999*******************9999999....77778888887 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0096       3.3      15      44 ..      18      47 ..      10      57 .. 0.85
   2 ?    3.2   5.3     0.078        27      24      57 ..      59      91 ..      50     112 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0096
     DUF3138 15 dglaaaaatadrikalkaqltalqrqvkel 44
                d+ +a + ta++i++l+ q+++l+ q+k l
  EHU01613.1 18 DTTSASSDTAAQIASLNKQISRLNDQLKSL 47
                678888999*****************9988 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.078
     DUF3138 24 adrikalkaqltalqrqvkelraalaaakaaaGg 57
                 ++  ++kaq++ l++q+++l++    +ka a  
  EHU01613.1 59 KKQQDTIKAQIQVLEAQIQQLQRKE-QQKAEAKQ 91
                4555566666666666666665542.22222222 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.7     0.018       6.3       6      68 ..      26      95 ..      21     105 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.018
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHH...XXXXXXXXXXXXXXXX CS
        YabA  6 lfdkleeleeqleelleeleelkeelaelleena....eLeleneklrerl...eeeekkekekkkelse 68
                  +++++l++q+++l+++l++l ++ + ++ee +    +++++ + l  ++   +++e++++e k++ +e
  EHU01613.1 26 TAAQIASLNKQISRLNDQLKSLGDDKTLTTEEKKkqqdTIKAQIQVLEAQIqqlQRKEQQKAEAKQAEKE 95
                5678888888999888888888776555555443111145666666666664433333333333333333 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.3    0.0048       1.7       3      41 ..      28      70 ..      26      72 .. 0.69
   2 ?    3.6   8.2       0.2        70       8      35 ..      65      92 ..      59     110 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0048
                HHHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHH CS
        Swi5  3 aeikeleeqleelekelaelkeelkekk....dpeetvkrhIk 41
                a+i++l++q+++l+++l++l +    ++    + ++t+k +I+
  EHU01613.1 28 AQIASLNKQISRLNDQLKSLGDDKTLTTeekkKQQDTIKAQIQ 70
                6899999999999999999987766665333356666666665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.2
                HHHHHHHHHHHHHHHHHHHHHHH.HHHH CS
        Swi5  8 leeqleelekelaelkeelkekkdpeet 35
                +++q++ le+++++l+ + ++k+++++ 
  EHU01613.1 65 IKAQIQVLEAQIQQLQRKEQQKAEAKQA 92
                5555555555555555555544433322 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4     0.011       3.9       5      24 ..      29      57 ..      26      64 .. 0.75
   2 ?    1.6   7.6      0.91   3.1e+02       4      32 ..      60      88 ..      57      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.011
     DUF2802  5 rlaelekrlkqleerleel.........e 24
                ++a+l+k++++l+++l++l         e
  EHU01613.1 29 QIASLNKQISRLNDQLKSLgddktltteE 57
                7999**************97776665541 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.91
     DUF2802  4 qrlaelekrlkqleerleeleqqdpqskl 32
                +++++++ +++ le+++++l+ +++q+ +
  EHU01613.1 60 KQQDTIKAQIQVLEAQIQQLQRKEQQKAE 88
                67889999************888887765 PP

>> DUF5339  Family of unknown function (DUF5339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.056        19      20      49 ..      21      50 ..      17      54 .. 0.87
   2 ?    3.2  14.9      0.46   1.6e+02      21      54 ..      54      87 ..      50     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.056
     DUF5339 20 ekqpgtktqadaikkqleqsKkqilalpke 49
                +   +t++q++++ kq++   +q+++l+++
  EHU01613.1 21 SASSDTAAQIASLNKQISRLNDQLKSLGDD 50
                456799*******************99877 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.46
     DUF5339 21 kqpgtktqadaikkqleqsKkqilalpkeqQeaa 54
                +++++k+q d+ik+q+    +qi +l  ++Q++a
  EHU01613.1 54 TTEEKKKQQDTIKAQIQVLEAQIQQLQRKEQQKA 87
                45889*********************99888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4132  (0.230465); expected 358.6 (0.02)
Passed bias filter:                     1211  (0.0675442); expected 358.6 (0.02)
Passed Vit filter:                       214  (0.011936); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              52  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 833.50
//
Query:       EHU01614.1  [L=306]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-42  143.4   1.6    9.7e-42  142.7   1.6    1.3  1  LysR_substrate  LysR substrate binding domain
    7.9e-22   77.0   1.4    7.9e-22   77.0   1.4    3.1  4  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.051   13.4   0.6        0.1   12.4   0.2    1.7  2  P22_Cro         DNA-binding transcriptional regulator Cro
       0.09   12.4   0.0       0.27   10.8   0.0    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   1.6   2.2e-45   9.7e-42       2     207 ..      89     292 ..      88     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 2.2e-45
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++ +g++ri+a++t++++l+p+ la+ ++ yPe+++ l+   ++++l+ +++ e+D++i+ gp++ds++++  +++ep++l++++d pLa+  + 
      EHU01614.1  89 EQRSGTVRIAASQTISARLMPQCLAASQQSYPEIKIILHDRVQQAVLQSVRHAEVDFGIVIGPLNDSEFDCCAILDEPFLLLCREDDPLAEVGQA 183
                     6899***************************************************************************************8899 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     ++ +L++ +++l +  sg r l+++alr+++++++v+ e+ + ++l  +v aG+Gi++lp++a+ + +a   l ++ l + ++ r l l+ rk+r
      EHU01614.1 184 RWPMLEGRTMVLQDYASGSRILIDAALRQQNISINVVQEIGHPATLFPMVDAGIGISILPALAL-PLPAGRALTVRRLYP-EINRSLTLIKRKNR 276
                     9**************************************************************9.99*************.************** PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                      l+pa +a ++ +r++
      EHU01614.1 277 SLTPAGEAIWQEVRQQ 292
                     *************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   1.4   1.8e-25   7.9e-22       1      60 []       5      64 ..       5      64 .. 0.99
   2 ?   -3.5   0.0       2.3     1e+04      34      47 ..      70      83 ..      67      89 .. 0.64
   3 ?   -2.4   0.0       1.1   4.9e+03      27      42 ..     131     146 ..     129     148 .. 0.85
   4 ?    1.4   0.0     0.071   3.2e+02      44      60 .]     269     283 ..     256     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.8e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrqlr+fvava  g f++A ++ glsq+avs++ik+LE+e gv+L++Rt+r ++LTeaG+
  EHU01614.1  5 LRQLRTFVAVAHYGGFSQAGQAIGLSQSAVSHSIKELEAETGVRLLDRTTREVVLTEAGQ 64
                79*********************************************************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
                HHHHHHHHTS-SEE CS
       HTH_1 34 ikrLEeelgvpLfe 47
                + rL ee++++L++
  EHU01614.1 70 MERLLEEINTTLLD 83
                55666666666765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHT CS
       HTH_1  27 qpavsrqikrLEeelg 42 
                 q av ++++  E  +g
  EHU01614.1 131 QQAVLQSVRHAEVDFG 146
                 8999999999998887 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.071
                 -SEEESSSEEEE-HHHH CS
       HTH_1  44 pLfeRtgrglrLTeaGe 60 
                 +L+ R  ++ +LT+aGe
  EHU01614.1 269 TLIKR--KNRSLTPAGE 283
                 46777..7789****97 PP

>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   2.3e-05       0.1       5      28 ..      13      36 ..       9      41 .. 0.92
   2 ?   -3.3   0.0       1.9   8.6e+03      41      55 ..     287     301 ..     280     304 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                HHHHHSSHHHHHHHHTS-HHHHHH CS
     P22_Cro  5 vikhFGgvekvAkalgvtksAVsq 28
                +++h+Gg +++ +a+g ++sAVs 
  EHU01614.1 13 AVAHYGGFSQAGQAIGLSQSAVSH 36
                79********************95 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                 HHHHTTTSS--HCCT CS
     P22_Cro  41 ierlTaGkLkvqkri 55 
                  e++ +G+L  q+r+
  EHU01614.1 287 QEVRQQGALLTQQRA 301
                 577778888777765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.9e-05      0.27      25      44 ..      25      44 ..      21      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.9e-05
      HTH_24 25 erlglSpstvnrrlkrLeee 44
                +++glS+s+v+  +k+Le e
  EHU01614.1 25 QAIGLSQSAVSHSIKELEAE 44
                689**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2373.72
//
Query:       EHU01615.1  [L=335]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-97  327.2  18.6    1.2e-97  327.1  18.6    1.0  1  SBF_like  SBF-like CPA transporter family (DUF4137)
    8.1e-10   38.7   6.3    8.1e-10   38.7   6.3    2.3  3  SBF       Sodium Bile acid symporter family


Domain annotation for each model (and alignments):
>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.1  18.6  1.3e-101   1.2e-97       2     313 .]       8     317 ..       7     317 .. 0.97

  Alignments for each domain:
  == domain 1  score: 327.1 bits;  conditional E-value: 1.3e-101
    SBF_like   2 wfllllilvillAslvPvfakaggtikaeyvikygValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaaldpelliGllll 100
                  +++ li+++llAs++P+ +    ++   y++++++al+F+++G++ls+e+++a+ ++wrlhl++++++f+++p+++l +v   + + ++e+++G+l+l
  EHU01615.1   8 PMMIKLIITVLLASFIPARGGFVDFFT--YLTTAAIALLFFMHGAKLSREKIIAGSSHWRLHLWIMCSTFVMFPALGLLIVWWHPVNVGAEIYTGFLYL 104
                 67899****************999996..8********************************************************************* PP

    SBF_like 101 aalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlllsgs.svsvdyaevlkklllsvllPlvvGqvlqkifpklvkrlkkllkkvdsl 198
                 ++lP+Tv+s++++ts+AgGn+a+a+c+a++++llGvf++P+lv+l+++++ + + d  e + k++l++l+P+v+G++ ++++  +v+r + l+  +d++
  EHU01615.1 105 CILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGVFVSPLLVNLVMDVNsNGPGDGLEQVGKIMLQLLVPFVLGHLSRRWISGWVERNRSLIGITDQT 203
                 ***********************************************65537788999999************************************** PP

    SBF_like 199 vlllivytsfstafaqgaftsvshiillvifnvallLllvvlvillllarllklskedeiavlfcgsaKslalgvplisvlfgsnpqlgllllPlllyh 297
                 ++ll+vy++fs+a+++g+++ v   +ll+i++ ++lLl++vl+i++l+arl+++s++dei+vlfcgs+Ksla+gvp++++lf+++ ++g+++lPl+++h
  EHU01615.1 204 SILLVVYSAFSEAVVNGIWKRVGIDTLLWILAGCILLLTLVLIINYLAARLFGFSRPDEIVVLFCGSKKSLANGVPMANILFPAS-AVGIIVLPLMIFH 301
                 **********************************************************************************885.9************ PP

    SBF_like 298 liqlvvaavlvsrlrr 313
                 ++ql+v+++++ r++r
  EHU01615.1 302 QVQLMVCSFIAGRYKR 317
                 ************9986 PP

>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   6.3     9e-14   8.1e-10       6     187 ..      43     215 ..      38     221 .. 0.80
   2 ?   -2.1   0.3      0.28   2.5e+03      67      85 ..     233     251 ..     229     255 .. 0.82
   3 ?   -2.3   0.3      0.33   2.9e+03      31      56 ..     275     300 ..     263     315 .. 0.56

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 9e-14
         SBF   6 lmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapgg.amsnvwtylakGdlelsvvlvalstlla 103
                 l+ f  g+k++ ek+ +  +  ++ l  +  ++v+ P l+ ++ + +   +++ +e+ +G + +++ p + ++++++t +a+G+++ +v    +s+ll 
  EHU01615.1  43 LLFFMHGAKLSREKIIAGSSHWRLHLWIMCSTFVMFPALGLLIVW-W-HPVNVGAEIYTGFLYLCILPATvQSAIAFTSMAGGNVAAAVCSASASSLLG 139
                 4455556666666666665555555556677899******99999.3.46679***************87366789*********************** PP

         SBF 104 illtPlllyllaksleqttlkvpieei..vksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifal 187
                 +++ Pll++l++  +     + p +++  v+ +++ +++P+++G l+r+++        + ++ + ++ +     +ll+++ +f+ 
  EHU01615.1 140 VFVSPLLVNLVMDVN----SNGPGDGLeqVGKIMLQLLVPFVLGHLSRRWISG------WVERNRSLIGITDQTSILLVVYSAFSE 215
                 ***************....4555444444899999*****************9......566888888888888888888877775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.28
         SBF  67 ilvglapggamsnvwtyla 85 
                 il g+    +++++++yla
  EHU01615.1 233 ILAGCILLLTLVLIINYLA 251
                 7888888888888888886 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.33
         SBF  31 llglvlqwvikPllmfilakillrdl 56 
                 + g+ +  ++ P  ++++ +++l+ +
  EHU01615.1 275 ANGVPMANILFPASAVGIIVLPLMIF 300
                 44444444455555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2476.81
//
Query:       EHU01616.1  [L=72]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-30  103.9   0.2    3.2e-30  103.8   0.2    1.0  1  QSregVF_b  Putative quorum-sensing-regulated virulence factor


Domain annotation for each model (and alignments):
>> QSregVF_b  Putative quorum-sensing-regulated virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.2   1.8e-34   3.2e-30       1      66 []       2      68 ..       2      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1.8e-34
   QSregVF_b  1 dkelleelvktkmPFGkYkgrllidlPeeYlvWfarkG.FPkgkLGellalvleiklngLesllkpl 66
                dk+ l e+++t mPFGkYkgr+lidlPe+Yl+Wfar G FP+g+LGel++l+l+ik++gLe l+kpl
  EHU01616.1  2 DKQALVEIANTAMPFGKYKGRMLIDLPEPYLLWFARSGeFPAGRLGELMQLTLAIKIEGLEGLVKPL 68
                6899*************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       117  (0.00652574); expected 358.6 (0.02)
Passed bias filter:                      113  (0.00630264); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 573.48
//
Query:       EHU01617.1  [L=672]
Description: DNA ligase, NAD(+)-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.8e-140  465.7   0.0   1.4e-139  464.6   0.0    1.5  2  DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
    2.1e-35  120.5   2.5    2.1e-35  120.5   2.5    2.3  3  DNA_ligase_OB    NAD-dependent DNA ligase OB-fold domain
    1.2e-24   86.2   0.1    2.3e-21   75.7   0.2    2.9  2  HHH_2            Helix-hairpin-helix motif
    2.5e-14   53.6   0.2    6.6e-07   29.8   0.0    2.6  2  HHH_5            Helix-hairpin-helix domain
    2.6e-14   53.3   0.0    6.7e-14   52.0   0.0    1.7  1  BRCT             BRCA1 C Terminus (BRCT) domain
      5e-11   42.4   4.1    1.6e-10   40.8   4.1    2.0  1  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma
    1.3e-06   28.3   0.0    6.2e-06   26.1   0.0    2.1  2  PTCB-BRCT        twin BRCT domain
    0.00098   18.8   0.4     0.0027   17.4   0.0    1.8  2  DUF4874          Domain of unknown function (DUF4874)
  ------ inclusion threshold ------
       0.02   15.0   0.3      0.054   13.6   0.1    1.8  2  Prok-E2_C        Prokaryotic E2 family C
      0.028   15.0   0.0       0.15   12.7   0.0    2.2  2  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
      0.084   12.8   0.0        1.3    9.0   0.0    2.9  3  HHH              Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.6   0.0  8.4e-143  1.4e-139       2     318 .]       3     318 ..       2     318 .. 0.99
   2 ?   -3.9   0.0       3.4   5.6e+03     234     272 ..     537     575 ..     529     578 .. 0.74

  Alignments for each domain:
  == domain 1  score: 464.6 bits;  conditional E-value: 8.4e-143
                      HHHHHHHHHHHHHHHHHHHHHCTT-SSC-HCHHHHHHHHHHHHHHHSGGG--TTSCCG-SSSS--CTS-EEE-SS-----EEE-SHHHHHHHHH CS
  DNA_ligase_aden   2 eakkeleelrellrkydyeYyvldePlvsDaeyDrllkelkelEekfPelitpdSPtqrvgaeleaefkkveHeapllSLdnafdedelkafle 95 
                      +++++++elr++lr+++y Y+v+d+P+v+DaeyDrl++el+ lE+++P+litpdSPtqrvga+++  f++v+He+p+lSLdnafde++++af++
       EHU01617.1   3 SVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPDLITPDSPTQRVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNK 96 
                      57899***************************************************************************************** PP

                      HHHHHSSS--S-EEEEEEEESSEEEEEEEETTEEEEEEE-TTSSEEEB-HHHHCT-TTS-SB-SSSS--SEEEEEEEEE--HHHHHHHHHHHHH CS
  DNA_ligase_aden  96 rieealgnkekvayvvelKiDGlavsllYengvlvraatRGdGttGedvtaNvktiksiPlklkvdnlpeelevRGEvylrkedFeklNeerle 189
                      r++++l+++  ++y++elK+DGlavsllYe+g+l+raatRGdGttGe++t+Nv+ti++iPl+lk dn+p+++evRGEv+++++ FeklN+e+++
       EHU01617.1  97 RVQDRLKSTDDLTYCCELKLDGLAVSLLYEDGLLTRAATRGDGTTGENITTNVRTIRAIPLRLKGDNIPARVEVRGEVFMTQSGFEKLNAEARR 190
                      ********************************************************************************************** PP

                      CT----SSHHHHHHHHHT-SSHHHHHTS--EEEEEEEEEEESS---.SBHHHHHHHHHHCT--B-TT-EEECSHHHHHHHHHHHHHHGGGSSS- CS
  DNA_ligase_aden 190 egeklfaNpRNaAaGslRqldpkitakrkLkliayglglvekeelevktqsealkvlkklglkvseelklvksieevleyieelekkRdeleye 283
                      ++ k+faNpRNaAaGslRqldp+itakr+L++++yglgl+e+ e++ ++++++l+++k +gl+vs++++lv++++e l++++e+e++R++l ++
       EHU01617.1 191 TEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMP-RSHMARLQQFKAWGLPVSDRIRLVQNADEALAFYHEVESERATLGFD 283
                      ******************************************7776.*********************************************** PP

                      EEEEEEEESBHHHHHHH-EETSCESSEEEEE---C CS
  DNA_ligase_aden 284 iDGvVvkvdelalqeeLGftakaPrwAiAyKfpae 318
                      iDGvV+kvd+ +lqe+LGf+a+aPrwA+A+Kfpa+
       EHU01617.1 284 IDGVVIKVDSQELQEKLGFVARAPRWAVAFKFPAQ 318
                      *********************************96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
                      --.SBHHHHHHHHHHCT--B-TT-EEECSHHHHHHHHHH CS
  DNA_ligase_aden 234 levktqsealkvlkklglkvseelklvksieevleyiee 272
                      + +++  +al +++++g  v ++++ + + e   e+i++
       EHU01617.1 537 KVMDADLDALIAVQDVGTVVAKHVRHFMEEESNREVIRQ 575
                      556677788888899999999999998887777776665 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       7.2   1.2e+04      49      68 ..     149     168 ..     146     171 .. 0.69
   2 !  120.5   2.5   1.3e-38   2.1e-35       2      78 ..     322     398 ..     321     399 .. 0.97
   3 ?   -2.4   0.0       2.8   4.6e+03      45      76 ..     537     568 ..     519     571 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.2
                    XXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB  49 irigdtVvvekaGdvIPevv 68 
                    +r    + ++  Gd IP  v
     EHU01617.1 149 VRTIRAIPLRLKGDNIPARV 168
                    55556677788899999755 PP

  == domain 2  score: 120.5 bits;  conditional E-value: 1.3e-38
                    --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB   2 tkledievqVGRtGaltpvAeLepvelaGttVsratLhnedeierkdirigdtVvvekaGdvIPevvgvvlekreee 78 
                    t + d+e+qVGRtGa+tpvA+Lepv++aG++Vs+atLhn+deier+++rigd+Vv+++aGdvIP+vv+vv+++r+++
     EHU01617.1 322 TIVCDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVTSERPDN 398
                    8899**********************************************************************975 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.8
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB  45 erkdirigdtVvvekaGdvIPevvgvvlekre 76 
                    +  d  ++  + v+  G v+ + v+  +e+ +
     EHU01617.1 537 KVMDADLDALIAVQDVGTVVAKHVRHFMEEES 568
                    55677788889999999999988887777655 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0033       5.3      31      61 ..     476     506 ..     467     508 .. 0.88
   2 !   75.7   0.2   1.4e-24   2.3e-21       1      64 []     510     573 ..     510     573 .. 0.99

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0033
       HHH_2  31 kasleeLlevddiGeeiAqsivefFeneknr 61 
                 + s e+L+ +d  G + Aq++v+ +e+ k +
  EHU01617.1 476 RLSRETLTGLDRMGAKSAQNVVDALEKAKST 506
                 56889********************998865 PP

  == domain 2  score: 75.7 bits;  conditional E-value: 1.4e-24
       HHH_2   1 rllfaLGIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFeneknreli 64 
                 r+l+aLGIr+VGe+tA +La++F++l++ ++a+l+ L++v+d+G+++A+ ++ f e+e+nre+i
  EHU01617.1 510 RFLYALGIREVGEATAANLASHFGDLQKVMDADLDALIAVQDVGTVVAKHVRHFMEEESNREVI 573
                 79************************************************************98 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   4.1e-10   6.6e-07       2      57 .]     446     502 ..     445     502 .. 0.94
   2 !   21.2   0.0     2e-07   0.00033       1      49 [.     511     558 ..     511     561 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.1e-10
                 HHHHTSTT--HHHHHHHHTTT.--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5   2 eeLlsvsGiGpktAlallsaG.iesvedlaaadveeLakipGiGkktAeriilelkd 57 
                 +  ++v+G+G k++  l+++  +++++dl ++++e+L+ +  +G+k A++++++l++
  EHU01617.1 446 RRAMDVDGMGDKIIDQLVEKEyVKTPADLFRLSRETLTGLDRMGAKSAQNVVDALEK 502
                 56789***************7799*****************************9975 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2e-07
                 -HHHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHH CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAe 49 
                 f + l++  +G++tA +l+s+ ++ ++++++ad ++L +++++G   A+
  EHU01617.1 511 FLYALGIREVGEATAANLASH-FGDLQKVMDADLDALIAVQDVGTVVAK 558
                 677899***************.*********************977665 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   4.1e-17   6.7e-14       4      76 ..     597     667 ..     595     670 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 4.1e-17
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHH CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewll 76 
                  +f g+++v+tg+l++++rd+++  + e+G+kv+++vskkt++l++ge    ++k+ +a++l+i+i++e ++ 
  EHU01617.1 597 SPFAGKTVVLTGSLSQMNRDDAKARLIELGAKVSGSVSKKTDLLIAGEA--AGSKLAKAQELGIEIIDEAEMI 667
                 69***********************************************..88***************99875 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   4.1   9.8e-14   1.6e-10       1      27 []     407     434 ..     407     434 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 9.8e-14
  DNA_ligase_ZBD   1 hCPvCGsavvReegeaiyRCtn.lsCpA 27 
                     +CPvCGs v+R egea++RCt+ l+C A
      EHU01617.1 407 QCPVCGSDVERVEGEAVTRCTGgLICGA 434
                     5********************77***77 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   3.2e+03      11      24 ..     566     581 ..     560     584 .. 0.78
   2 !   26.1   0.0   3.8e-09   6.2e-06       7      59 ..     609     661 ..     603     663 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
                 TC..HHHHHHHHHHTT CS
   PTCB-BRCT  11 dd..rkslqklieamG 24 
                 ++  r+ +++l+e++G
  EHU01617.1 566 EEsnREVIRQLVEDIG 581
                 44479*********99 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 3.8e-09
                 CB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE CS
   PTCB-BRCT   7 gysgddrkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvV 59 
                  +s+ +r++++  + ++Ga++s+ ++k++  Li+ ++ G+k  kA++ gi+++
  EHU01617.1 609 SLSQMNRDDAKARLIELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEII 661
                 456777********************************************997 PP

>> DUF4874  Domain of unknown function (DUF4874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       1.4   2.4e+03      89     107 ..       2      20 ..       1      27 [. 0.79
   2 !   17.4   0.0   1.6e-06    0.0027      46     144 ..     485     578 ..     465     585 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
     DUF4874  89 eqilrHieqlkpileenkd 107
                 + +++Hi +l+++l++++ 
  EHU01617.1   2 KSVQEHITELRTTLRHHEY 20 
                 67999*******9999875 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.6e-06
     DUF4874  46 lseealdklekiletlrkagkkvilRfaYdtegkateeedasleqilrHieqlkpileenkdvIavvqagfiGawGEwhssknlkdkesrkkileklle 144
                 l++   +  ++++++l+ka+  ++ Rf+Y      +e  +a+   + +H  +l++++ +  d++++vq   +G+    h  +++ ++es ++++++l+e
  EHU01617.1 485 LDRMGAKSAQNVVDALEKAKSTTLARFLYALG--IREVGEATAANLASHFGDLQKVMDADLDALIAVQD--VGTVVAKHVRHFM-EEESNREVIRQLVE 578
                 6777778899**********************..99999*****************************8..7999999999999.99999999998876 PP

>> Prok-E2_C  Prokaryotic E2 family C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.3e-05     0.054       7      80 ..     323     397 ..     317     411 .. 0.83
   2 ?   -4.0   0.0       9.1   1.5e+04      34      63 ..     640     670 ..     637     671 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
   Prok-E2_C   7 ascategrasldllvrllarlypv.lallplgeeakklakalerlaksinedvtiarrgksalsiclvvgvtrpe 80 
                   c +e +     ++  +arl pv +a + + +++ + a ++erl   i ++v i+r g+    +  vv + rp+
  EHU01617.1 323 IVCDVEFQVGRTGAITPVARLEPVqVAGVMVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVTSERPD 397
                 56888888888889999******934556666777789**********************998888899999996 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9.1
   Prok-E2_C  34 lplgeea.kklakalerlaksinedvtiarr 63 
                 l +ge+a +klaka e     i+e   i+r 
  EHU01617.1 640 LIAGEAAgSKLAKAQELGIEIIDEAEMIRRL 670
                 5667766468888887777777777777775 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         4   6.5e+03      20      38 ..     482     500 ..     478     506 .. 0.78
   2 ?   12.7   0.0   9.3e-05      0.15      22      73 ..     516     576 ..     514     591 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4
  5_3_exonuc  20 ipGvpgiGektAakLlkey 38 
                 + G   +G+k A++++   
  EHU01617.1 482 LTGLDRMGAKSAQNVVDAL 500
                 67999999**999988765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.3e-05
  5_3_exonuc  22 GvpgiGektAakLlkeygsleeilenl.d...elke.....kklkekLeenkeearlskkL 73 
                 G++ +Ge tAa+L +++g+l++++++  d    +++      k  +++ e++ + ++ ++L
  EHU01617.1 516 GIREVGEATAANLASHFGDLQKVMDADlDaliAVQDvgtvvAKHVRHFMEEESNREVIRQL 576
                 99*********************99321221111113323322222333333334444444 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   2.4e+03       9      28 ..     478     497 ..     473     499 .. 0.81
   2 ?   -1.1   0.0       1.3   2.1e+03      19      29 ..     520     530 ..     516     531 .. 0.79
   3 ?    9.0   0.0   0.00079       1.3       2      28 ..     535     561 ..     534     563 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                 SHHHHHTSTT-SHHHHHHHH CS
         HHH   9 sreeLlalPGVGpktAeaIl 28 
                 sre L+ l   G k A+ + 
  EHU01617.1 478 SRETLTGLDRMGAKSAQNVV 497
                 89999999989999999876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
                 -SHHHHHHHHH CS
         HHH  19 VGpktAeaIls 29 
                 VG++tA   +s
  EHU01617.1 520 VGEATAANLAS 530
                 9*****87665 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00079
                 HHHHHTSSHHHHHTSTT-SHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIl 28 
                 l+ +++a+++ L a+  VG  +A +++
  EHU01617.1 535 LQKVMDADLDALIAVQDVGTVVAKHVR 561
                 7899*******************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.21s 00:00:00.82 Elapsed: 00:00:00.36
# Mc/sec: 5660.52
//
Query:       EHU01618.1  [L=332]
Description: cell division protein involved in Z ring assembly [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-50  169.4   0.1    3.6e-50  169.1   0.1    1.1  1  ZipA_C       ZipA, C-terminal FtsZ-binding domain


Domain annotation for each model (and alignments):
>> ZipA_C  ZipA, C-terminal FtsZ-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.1     2e-54   3.6e-50       2     128 .]     197     323 ..     196     323 .. 0.99

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 2e-54
      ZipA_C   2 vivlnvvakegeafsGtkllqaleaaglklgemgiFhrhededgkgpvlFslanmvkpGtFdlenmeefstpGvslflqlpsvgdaleafdqmletArq 100
                 vivl+v+a++g++++G++llq + +ag+++gem+iFhrh +++g+gpvlFslanmvkpG F++++m +f+tpGvs+f+ +ps+gda+++f+ ml+ A++
  EHU01618.1 197 VIVLHVAAHSGGQLNGEALLQGILQAGFQFGEMNIFHRHLSPAGSGPVLFSLANMVKPGSFNPDEMTDFTTPGVSIFMMVPSYGDANQNFKLMLQSAQR 295
                 89************************************************************************************************* PP

      ZipA_C 101 laeeLggellDenrsplteqtiekirqr 128
                 +a+++gg++lD++r+++t+q++e +++r
  EHU01618.1 296 IADDVGGVVLDDERRMMTPQKLETYKAR 323
                 ************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2421.94
//
Query:       EHU01619.1  [L=255]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-43  146.9  15.1    8.3e-43  146.7  15.1    1.0  1  EI24      Etoposide-induced protein 2.4 (EI24)
  ------ inclusion threshold ------
        3.9    7.6  10.2         43    4.2   0.0    2.6  2  DUF997    Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7  15.1   9.3e-47   8.3e-43       1     178 []      15     231 ..      15     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 9.3e-47
                 HHHHHHHHHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH................-.....TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EI24   1 allrglglllsspkllallllplllnlllfllllvlll................w.....vllasllvllllllplwlfplvalllaapfygllaekve 78 
                 ++ +g++l++  p++++++++pll+n+ll+++++v+l+                w     ++l++l v++++l++ ++f+++a+l+aapf+gllae++e
  EHU01619.1  15 YFSQGWKLIRL-PGIRRFVIIPLLVNILLLGGAFVWLFfrldewipklmshvpdWlqwlsYVLWPLSVISVVLVFSYFFSTIANLIAAPFCGLLAEQLE 112
                 689999*9988.*******************77666667****87777777777366699999************************************ PP

                 H.HH..........CCTTSHH....HHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH...-HHHHHHHHHCTHHHHHH CS
        EI24  79 krhl..........glvksla....eslkslllllllllvllpl.liPvvglilsplllswltayfycfeyldlaagr...sleerrallerrrayflg 159
                  r            g+vk+++    ++l++l ++l+++l ll+l l+P++g++++p+l++ ++a+++ ++y+d+++++   s++++r  l++++   + 
  EHU01619.1 113 GRLTgkplpdsgwlGMVKDVPrimkRELQKLGYYLPRALCLLLLyLVPGFGQTVAPVLWFMFSAWMLSVQYCDYPFDNhkvSFQQMRHALRQHKTANMQ 211
                 9664677778888899***99***********************999**************************************************** PP

                 HHHHHHHHTTSCCHHCTH.H CS
        EI24 160 fGllvslllliPllnllf.P 178
                 fG+lvsl+++iP++nl + P
  EHU01619.1 212 FGALVSLFTMIPVVNLAImP 231
                 ****************8755 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   8.2     0.015   1.4e+02      35      70 ..      57      95 ..      30      96 .. 0.75
   2 ?    4.2   0.0    0.0048        43      50      75 ..     166     191 ..     161     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.015
      DUF997 35 y...yilglPlWfflscillpilfivlvillvkfvFkdi 70
                +    + ++P W+ +   +l++l ++ v+l+  ++F+ i
  EHU01619.1 57 WipkLMSHVPDWLQWLSYVLWPLSVISVVLVFSYFFSTI 95
                33557889****************************865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0048
      DUF997  50 llpilfivlvillvkfvFkdipLdde 75 
                 + p+l +++  +++ + + d p+d++
  EHU01619.1 166 VAPVLWFMFSAWMLSVQYCDYPFDNH 191
                 56788889999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2030.86
//
Query:       EHU01620.1  [L=322]
Description: cysteine synthase A, O-acetylserine sulfhydrolase A subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-68  230.7   0.6    2.7e-68  230.5   0.6    1.0  1  PALP          Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.034   13.8   0.5          1    9.0   0.1    2.6  3  Peripla_BP_6  Periplasmic binding protein
      0.048   13.6   0.4       0.38   10.7   0.4    2.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
       0.09   12.6   0.1       0.16   11.7   0.1    1.4  1  DFP           DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5   0.6   6.1e-72   2.7e-68       3     293 ..      10     300 ..       8     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 230.5 bits;  conditional E-value: 6.1e-72
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallr 98 
                 l ig TPlvrl+r+    ++++++K Es np+ S+K R  +++++++++    +++  +ve +sGN+g+alA++aa+ G+k+t+ +p+++s e+++ll+
  EHU01620.1  10 LTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRgilKQGIELVEPTSGNTGIALAYVAAARGYKLTLTMPDTMSVERRKLLK 105
                 689**********98...778*************************77777************************************************ PP

                 HTT-EEEEECCH..HHHHHHHHHHHHHH.STTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT..-EEEEEE CS
        PALP  99 llGaevvevggd..ydeavaaaaelaae.gegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpd..vrvigve 191
                 +lGa++v+++g+   + a a+a+e+ a+  ++++l++qf+np++ e   +t+g+Ei+e+++g++d+++++vG+Gg+++G+++++k   ++     ++ve
  EHU01620.1 106 ALGANLVLTEGTkgMKGAIAKAEEIVASdPDKYLLLQQFSNPANPEIhEKTTGPEIWEDTDGEVDVFIAGVGTGGTLTGVSRYIKNTQGKksLITVAVE 204
                 *********777668888888999988878899999**************************************************666656888899* PP

                 ECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEE CS
        PALP 192 pegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrv 288
                 p+ s+ +a+++ ag  ++++++++ ++g+++g  p++l+++l+d  v+    ++++ea++++r+l ++egi+++ ss+aa+aa+ kl+e+++++++ ++
  EHU01620.1 205 PTDSPVIAQAM-AG--EELKPGPHKIQGIGAGfIPGNLDLALIDLAVG----ITNDEAIATARRLMEEEGILAGISSGAAVAAAlKLQEDEAYANK-NI 295
                 ***********.55..5577889******************9987777....********************************************.9* PP

                 EEEE- CS
        PALP 289 vvilt 293
                 vvil+
  EHU01620.1 296 VVILP 300
                 99986 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.29   1.3e+03     206     254 ..      49      97 ..      46     111 .. 0.69
   2 ?    1.8   0.0     0.034   1.5e+02     111     144 ..     171     204 ..     151     221 .. 0.81
   3 ?    9.0   0.1   0.00023         1      53     103 ..     251     304 ..     242     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.29
                   HHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTCCC CS
  Peripla_BP_6 206 llkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpdld 254
                   ++  a++ G+  ++i lv ++ +++ ++ +  +aa g+ ++ + ++ ++
    EHU01620.1  49 MIWDAEKRGILKQGIELVEPTSGNTGIALAYVAAARGYKLTLTMPDTMS 97 
                   5556777787777788888887777777777778888888877665554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.034
                   EEESS--HHHHHHHHHHHHHHHTTSCEEEEEEES CS
  Peripla_BP_6 111 vfslgpsysaqasalveylakelggkkvalvyad 144
                   vf +g  +   ++++ +y+++++g+k++ +v++ 
    EHU01620.1 171 VFIAGVGTGGTLTGVSRYIKNTQGKKSLITVAVE 204
                   7888888999999*************99999865 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00023
                   SHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHH..H..HHHHHHT-EEEESS-HH CS
  Peripla_BP_6  53 dpdraaeaarrlvdqdgvdalvgplssavaaav..a..evlakdgvpvigpaglt 103
                   + d+a++ arrl++++g+ a +   ++avaaa+  +  e++a+++++vi p++++
    EHU01620.1 251 TNDEAIATARRLMEEEGILAGISS-GAAVAAALklQedEAYANKNIVVILPSSGE 304
                   5799*************9998885.788888874322247888999999998765 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   8.5e-05      0.38       3      73 ..      74     183 ..      73     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.5e-05
                 HHHHHHHHHHTT-EEEEEES...SHHHHHHHHHTTESEEEET......................................TTCHHHHHHHHHTTTSSEE CS
  ADH_zinc_N   3 GlaavqlAkalGaeviavds...seeklelakklGadeviny......................................keadlverikeltggegvd 60 
                 G+a+  +A+a G + + + +   s e+++l+k lGa+ v+++                                      ++ +   +i+e t ++ vd
  EHU01620.1  74 GIALAYVAAARGYKLTLTMPdtmSVERRKLLKALGANLVLTEgtkgmkgaiakaeeivasdpdkylllqqfsnpanpeihEK-TTGPEIWEDT-DGEVD 170
                 6677777777777555554411156799**************6655555544444444444444444444444444443222.3444444444.44777 PP

                 EEEESSCSHHHHH CS
  ADH_zinc_N  61 vvfecvGsgatle 73 
                 v +  vG+g tl+
  EHU01620.1 171 VFIAGVGTGGTLT 183
                 7777777666665 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.7e-05      0.16      26      77 ..      68     125 ..      65     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
                 ----HHHHHHHHHHHHTT-EEEEEE-S-.SS--.....-TT-EEEE--SHHHHHHHHH CS
         DFP  26 rSSGkmGyalAeaaaarGaeVtlvsgpv.slet.....pegvevvkvesaeemleave 77 
                 + SG +G+alA  aaarG + tl    + s+e        g+++v  e ++ m+ a+ 
  EHU01620.1  68 PTSGNTGIALAYVAAARGYKLTLTMPDTmSVERrkllkALGANLVLTEGTKGMKGAIA 125
                 57*********************98775355542333123566677777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2573.64
//
Query:       EHU01621.1  [L=85]
Description: phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   99.1   0.3    1.4e-28   99.0   0.3    1.0  1  PTS-HPr   PTS HPr component phosphorylation site


Domain annotation for each model (and alignments):
>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.3   7.6e-33   1.4e-28       2      81 ..       3      82 ..       2      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 7.6e-33
                EEEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHHC CS
     PTS-HPr  2 ekkvtiknekGlhaRpAamlvqaasefksevtlekkdkpvnaksilglmsLgvkkGeevtvsaeGedeeealealaelle 81
                +++vti+ ++Glh+RpAa++v++a+ f+se+t+++++k+++aks+++l +Lg+ +G+ vt+saeGede++a+e+l++l++
  EHU01621.1  3 QQEVTITAPNGLHTRPAAQFVKEAKAFQSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTLSAEGEDEQKAVEHLVKLMA 82
                789*******************************988****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 705.69
//
Query:       EHU01622.1  [L=575]
Description: PEP-protein phosphotransferase of PTS system (enzyme I) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.5e-124  413.7   0.1   4.7e-124  413.3   0.1    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    2.9e-31  108.0   5.5    2.9e-31  108.0   5.5    2.9  4  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    4.9e-25   87.0   0.1    1.8e-24   85.3   0.1    2.0  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
       0.43   10.9   2.9        1.6    9.0   0.1    2.8  3  MHB              Haemophore, haem-binding


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.3   0.1  1.1e-127  4.7e-124       2     293 ..     251     541 ..     250     542 .. 0.99

  Alignments for each domain:
  == domain 1  score: 413.3 bits;  conditional E-value: 1.1e-127
                      HHSTSCCCCCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHHHHHHHHHHHHHTTTSEEEEEXXXSSCCGGSGG CS
  PEP-utilizers_C   2 aesgklktllavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteeeqaeaykkvleamngrpvvvRtlDiggdkelpe 95 
                      +e++klk+l+avt dg++++v+aNi+t++d++ a++ngaeG+GL+RtEflfm+r++lpteeeq++ayk+v+eam +++v+vRt+Diggdk lp+
       EHU01622.1 251 HELAKLKDLPAVTLDGHQVEVCANIGTVRDIAGAERNGAEGVGLYRTEFLFMDRDSLPTEEEQFQAYKAVAEAMGSQAVIVRTMDIGGDKDLPY 344
                      67899***************************************************************************************** PP

                      CHHHH.XSXGGGSSXTHHHHCCSHHHHHHHHHHHHHHCCCCEEEEEESSXXSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHHH CS
  PEP-utilizers_C  96 lkeepeevNPmlGfRgirlglsepelfetqlrAllrasaagkleimlPmvasveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaal 189
                      + ++p+e+NP+lG+R+ir++++++e++++qlrA+lras +gkl+im+Pm+ svee+++ k+ +e  k++l++eg +++++++vGiM+E+p+ a+
       EHU01622.1 345 M-NLPKEENPFLGWRAIRIAMDRKEILHAQLRAILRASSFGKLRIMFPMIISVEEVRTLKAELELLKAQLREEGKAFDESIEVGIMVETPASAV 437
                      *.******************************************************************************************** PP

                      THHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGHH CS
  PEP-utilizers_C 190 ladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagdpsavellvglGldelSmsaasvp 283
                      +a++lakevdFfSiGtNDLtQytlavdR n+ +++ly+p+ p+vl+lik+vi+a++++g+++g+CGelagd++a+ ll+g+Glde+Smsa s+p
       EHU01622.1 438 IARHLAKEVDFFSIGTNDLTQYTLAVDRGNDLISHLYNPMTPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIP 531
                      ********************************************************************************************** PP

                      HHHHHHHCTT CS
  PEP-utilizers_C 284 aaraalaqve 293
                       +++ +++++
       EHU01622.1 532 GIKKIIRNTH 541
                      ******9875 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   5.5   6.5e-35   2.9e-31       2     116 .]       4     126 ..       3     126 .. 0.97
   2 ?   -1.3   0.0      0.55   2.4e+03      91     105 ..     232     246 ..     216     267 .. 0.60
   3 ?   -2.4   0.2       1.1     5e+03      85     109 ..     311     335 ..     309     336 .. 0.78
   4 ?   -3.5   0.1       2.5   1.1e+04      43      54 ..     402     413 ..     396     439 .. 0.55

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 6.5e-35
                      -EEEE-SEEEEEEE.....---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT CS
  PEP-utilisers_N   2 GiaaspGiaiGkav.....eveveeeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleeveerIregg 87 
                      Gi aspGia+Gka+     e+ ++++++++++ve+e++r+ + + k++e+lea++ ka   lgee+aaife h+mlleD+el +e+ ++I++++
       EHU01622.1   4 GILASPGIAFGKALllkedEIVINRKKISDDQVEQEVQRFLQGRSKAAEQLEAIRIKAsesLGEEKAAIFEGHIMLLEDEELEQEIIDLIKKDH 97 
                      9*****************988899*****************************9988889********************************** PP

                      --HHHHHHHHHHHHHHHHHHTT-HHHHHH CS
  PEP-utilisers_N  88 lnaeaAveevveefaaqfealddeylreR 116
                       +a aAv++v+++ a+++e+lddeyl+eR
       EHU01622.1  98 ATADAAVNSVIDAQAKALEELDDEYLKER 126
                      ****************************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.55
                      HHHHHHHHHHHHHHH CS
  PEP-utilisers_N  91 eaAveevveefaaqf 105
                        Av+e ++++ +q+
       EHU01622.1 232 SEAVQEELKAVQNQY 246
                      444444444333332 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.1
                      HHT--HHHHHHHHHHHHHHHHHHTT CS
  PEP-utilisers_N  85 egglnaeaAveevveefaaqfeald 109
                      e++ +a +Av+e++ + a   + +d
       EHU01622.1 311 EEQFQAYKAVAEAMGSQAVIVRTMD 335
                      5777888999999988888877775 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 2.5
                      HHHHHHHHHHHH CS
  PEP-utilisers_N  43 vreelealaeka 54 
                      +++ele l++++
       EHU01622.1 402 LKAELELLKAQL 413
                      334444443333 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1     4e-28   1.8e-24       2      71 ..     152     223 ..     151     224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 4e-28
                    --S-EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETT CS
  PEP-utilizers   2 leegvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgs 71 
                    ++e++ILva++++ps++a+l+  k+ G++t+ GG+tSH++i+Ar+l+iPa+vg+g++t ++k+gd i++Dg 
     EHU01622.1 152 IQEESILVAKDLTPSETAQLNlkKVLGFITDLGGRTSHTSIMARSLEIPAIVGTGNVTATIKNGDFIILDGV 223
                    6889******************************************************************95 PP

>> MHB  Haemophore, haem-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00036       1.6      34      66 ..      26      58 ..      21      63 .. 0.88
   2 ?    0.8   0.1      0.14   6.1e+02      27      63 ..      83     119 ..      78     131 .. 0.83
   3 ?   -2.4   0.0       1.3     6e+03      39      62 ..     230     253 ..     222     258 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00036
         MHB 34 tslkgqprdqaraavkaYfdanPqvaadLrgIr 66
                 + k+ ++dq++++v+ +++ + ++a++L++Ir
  EHU01622.1 26 INRKKISDDQVEQEVQRFLQGRSKAAEQLEAIR 58
                56678889************************8 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
         MHB  27 PdvnqaltslkgqprdqaraavkaYfdanPqvaadLr 63 
                  +++q + +l ++++  a aav++ +da+ ++ ++L+
  EHU01622.1  83 EELEQEIIDLIKKDHATADAAVNSVIDAQAKALEELD 119
                 6778888899999999999999999999988888885 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
         MHB  39 qprdqaraavkaYfdanPqvaadL 62 
                 +p +++++++ka  ++   ++++L
  EHU01622.1 230 NPSEAVQEELKAVQNQYLSEKHEL 253
                 455555555555444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 4796.77
//
Query:       EHU01623.1  [L=166]
Description: glucose-specific enzyme IIA component of PTS [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-50  167.6   2.1    1.2e-49  167.3   2.1    1.1  1  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
     0.0017   18.1   0.4      0.022   14.6   0.0    2.6  3  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.028   14.6   0.4       0.29   11.3   0.1    2.2  2  Peptidase_M23    Peptidase family M23
       0.09   12.6   5.2        1.4    8.8   0.1    3.4  4  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   2.1   2.6e-53   1.2e-49       2     126 ..      19     143 ..      18     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.3 bits;  conditional E-value: 2.6e-53
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 +i++p+sGe+v++e+vpD vfaek++GdG+ai+ps +k+vapvdG++ k+f+t+Ha+ i++d+g+e+ +h+Gidtv+lkgegF+ +++eg+kVk+gd +
  EHU01623.1  19 DIVAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPSGNKMVAPVDGTIGKIFETNHAFSIESDNGIELFVHFGIDTVELKGEGFKRIAEEGQKVKKGDVV 117
                 79*********************************9*************************************************************** PP

                 EEE-HHHHGGGSS---EEEEESSGGG CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnsee 126
                 +e+dl  ++++++st tpvv++n++e
  EHU01623.1 118 IEFDLPLLEEKAKSTLTPVVISNMDE 143
                 ***********************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.18   8.1e+02       3      16 ..      18      31 ..      16      32 .. 0.82
   2 ?   -1.5   0.0      0.52   2.3e+03       7      15 ..      59      67 ..      56      69 .. 0.79
   3 !   14.6   0.0     5e-06     0.022      19      39 ..     106     126 ..     105     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.18
  Biotin_lipoyl_2  3 vsIaapvsGrVaql 16
                     + I ap+sG ++ +
       EHU01623.1 18 IDIVAPLSGEIVNI 31
                     57889****99976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.52
  Biotin_lipoyl_2  7 apvsGrVaq 15
                     apv+G++ +
       EHU01623.1 59 APVDGTIGK 67
                     89***9965 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 5e-06
  Biotin_lipoyl_2  19 kdGqrVkaGdvLaelDsralq 39 
                      ++Gq Vk+Gdv +e D + l+
       EHU01623.1 106 EEGQKVKKGDVVIEFDLPLLE 126
                      69************9987777 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11     5e+02      13      29 ..      16      33 ..       9      45 .. 0.78
   2 ?   11.3   0.1   6.6e-05      0.29       4      69 ..      46     117 ..      41     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                   T-.EEEESSSEEEEEEEE CS
  Peptidase_M23 13 gt.pVlAaadGtVvfagk 29
                   gt  ++A+ +G++v++++
     EHU01623.1 16 GTiDIVAPLSGEIVNIED 33
                   443699*******99876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.6e-05
                    SSEEEEETTT-EEEESSSEEE..EEEEEET...TTEEEEEEEECTCEEEEEEEESEES..S-TTEEE-TTCEE CS
  Peptidase_M23   4 kGidiaapkgtpVlAaadGtV..vfagkke...gyGnvviidhgdgystlyahlskis..vkegqkVkaGqvI 69 
                    +Gi i+ + g++ +A+ dGt+  +f  ++    + +n + +    g+ t+ +  + ++   +egqkVk+G+v+
     EHU01623.1  46 DGIAIKPS-GNKMVAPVDGTIgkIFETNHAfsiESDNGIELFVHFGIDTVELKGEGFKriAEEGQKVKKGDVV 117
                    57777777.999*********76555553355577999999999999999999888888677********986 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21   9.3e+02      43      56 ..      18      31 ..      13      43 .. 0.79
   2 ?    3.7   0.0     0.012        53      43      59 ..      55      71 ..      53      83 .. 0.83
   3 ?    8.8   0.1   0.00032       1.4      17      35 ..     101     119 ..      92     123 .. 0.82
   4 ?   -1.2   0.1      0.41   1.8e+03      53      73 .]     144     164 ..     133     164 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
                   EEEEBSSSEEEEEE CS
  Biotin_lipoyl 43 meieapkaGvvkei 56
                   ++i ap +G ++ i
     EHU01623.1 18 IDIVAPLSGEIVNI 31
                   56788888888777 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.012
                   EEEEBSSSEEEEEESST CS
  Biotin_lipoyl 43 meieapkaGvvkeilvk 59
                   +++ ap++G++ +i   
     EHU01623.1 55 NKMVAPVDGTIGKIFET 71
                   6789**********876 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00032
                    CSESSSTTCEE-TTSEEEE CS
  Biotin_lipoyl  17 vevlvkvGdkVkagqvlae 35 
                     + + ++G+kVk+g+v++e
     EHU01623.1 101 FKRIAEEGQKVKKGDVVIE 119
                    5567899*********997 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.41
                    EEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  53 vkeilvkeGdtvevgdllaki 73 
                    +k++ + +G+ v   +++++i
     EHU01623.1 144 IKDLTKLSGQVVVGETPVIRI 164
                    777888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1352.70
//
Query:       EHU01624.1  [L=449]
Description: putative two-component system sensor kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.3e-18   65.1   0.0    1.2e-17   64.4   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.7e-13   48.4   0.3    3.3e-12   46.6   0.3    2.1  1  HAMP         HAMP domain
    7.8e-12   45.1   7.1    1.8e-11   43.9   3.6    2.7  3  HisKA        His Kinase A (phospho-acceptor) domain
    0.00027   20.9   0.0     0.0006   19.8   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.042   14.4   2.6       0.11   13.0   1.8    2.2  1  HisKA_3      Histidine kinase
       0.16   12.2   0.5       0.27   11.5   0.5    1.3  1  THOC7        Tho complex subunit 7


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0     4e-21   1.2e-17       7     109 ..     343     444 ..     337     447 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 4e-21
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEE CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttft 105
                 r+ i n++ Na++f+ ++++iev++++++++l i+v+D G+G+++++l  +f++f++  ++   g+g GlGl+iv+k+v  ++Ge++  ++p++G + t
  EHU01624.1 343 RRGIENVLRNALRFSLPGQRIEVSLQVEQQWLAIQVRDQGPGVDENKLSSIFDPFVR-VNSPLLGKGYGLGLAIVRKVVLAHHGEVRAVNRPEGGLELT 440
                 67799*********88**********9889***************************.44444589***********9998****************** PP

                 EEEE CS
   HATPase_c 106 ftlp 109
                 ++lp
  EHU01624.1 441 LRLP 444
                 *998 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.3   1.1e-15   3.3e-12       1      52 [.     169     223 ..     169     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.1e-15
                 HHHHTTHHHHHHHHHHHHHHTTTBTSST..CCT.TSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtr..lpv.sgrDEiGeLarafNaMldrLr 52 
                 lla++++rP+r+L++   r+a+Gdl+ r  +   ++ DE+  +a+af+aM++rL 
  EHU01624.1 169 LLAWNLTRPMRQLREGFSRVANGDLSIRlyPALrKRHDELSSVAQAFDAMVERLD 223
                 69****************************88989******************96 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.7   7.9e+03      42      58 ..     206     222 ..     188     227 .. 0.53
   2 !   43.9   3.6   6.1e-15   1.8e-11       2      66 ..     229     290 ..     228     291 .. 0.94
   3 ?    1.4   0.0      0.11   3.2e+02      19      30 ..     334     345 ..     333     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHHHHH CS
       HisKA  42 etiesearrldhlvedl 58 
                 + + s a+  d++ve+l
  EHU01624.1 206 DELSSVAQAFDAMVERL 222
                 33334444444444444 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 6.1e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ +l +++HELr PL+ +++++ + +     +e++ + l++i +ea+rld+++ +lL+l+r e+
  EHU01624.1 229 REALLHDISHELRSPLARLQLATGLARQ---RPENVNDSLDRIDEEAQRLDKMIGELLTLARAEH 290
                 6789*********************966...57*****************************997 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.11
                 HHHHHHHHHHC. CS
       HisKA  19 ailgnaeaLkre 30 
                 +++gnae+++r 
  EHU01624.1 334 TVRGNAELCRRG 345
                 699******996 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     2e-07    0.0006      47     109 ..     357     420 ..     339     442 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2e-07
  HATPase_c_2  47 ayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglv 109
                       p +++ev+l++++++l ++v+D+Gpg d  +l       p         +k  G+Gla+++++v
   EHU01624.1 357 SL---PGQRIEVSLQVEQQWLAIQVRDQGPGVDENKLSSIFD--PfvrvnsPLLGKGYGLGLAIVRKVV 420
                  33...4799**********************88876543322..23344558899999******99987 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.8   3.7e-05      0.11       9      62 ..     233     285 ..     227     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3   9 LHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhn 62 
                 LHD ++++L +  ++l+la +l++++pe +++ l++i e a++  + + +ll+ 
  EHU01624.1 233 LHD-ISHELRSPLARLQLATGLARQRPENVNDSLDRIDEEAQRLDKMIGELLTL 285
                 787.8**********************************999988777777765 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5     9e-05      0.27      16      95 ..     208     283 ..     192     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9e-05
       THOC7  16 lkrltkrllklltslaesteeeleqlkedllldfa.afelsierlqllakanerereryeaekeeieseieavreeieelk 95 
                 l+ +++ +++++++      + l +++e+ll d++ ++++ ++rlql +   ++  e++++  ++i++e++ + + i el 
  EHU01624.1 208 LSSVAQAFDAMVER-----LDTLVRAREALLHDIShELRSPLARLQLATGLARQRPENVNDSLDRIDEEAQRLDKMIGELL 283
                 45555555555555.....68889999**99999748**************************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3481.86
//
Query:       EHU01625.1  [L=226]
Description: CpxR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-21   75.8   0.0    4.3e-21   75.2   0.0    1.3  1  Response_reg  Response regulator receiver domain
      8e-21   73.9   0.5    3.2e-20   72.0   0.0    2.0  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   4.9e-25   4.3e-21       1     111 [.       3     111 ..       3     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 4.9e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdDd  + + l+q+l  eg+ +++ + +g++ ++ + + ++  ++lDi++p+m+G ++l+++r+++  lpvi+lta++++ d+v +l++gadd+
    EHU01625.1   3 ILLVDDDVELGTMLSQYLITEGF-DTQLVLTGTAGVQGALSGEYSAMILDIMLPDMSGTDVLRQVRQQS-RLPVIMLTAKGDNIDRVIGLEMGADDY 97 
                   89*********************.*******************************************88.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   + Kp+ p+eL+++l
    EHU01625.1  98 MPKPCYPRELVARL 111
                   ***********997 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.13   1.2e+03      49      61 ..     107     119 ..     105     126 .. 0.78
   2 !   72.0   0.0   3.6e-24   3.2e-20       2      77 .]     150     225 ..     149     225 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
                  HHHHHHHHHHTTT CS
  Trans_reg_C  49 hisrLRkkLedde 61 
                   ++rLR  L+  e
   EHU01625.1 107 LVARLRAVLRRIE 119
                  699*****99864 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 3.6e-24
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +  +lt+ ef+lL lLl++p+rvv+++eL e+  g+  +  dr+vdvhis++R+kL++ ++++  Ietvr++GYr+
   EHU01625.1 150 KAFDLTASEFNLLDLLLRSPDRVVTKDELSEKGLGRPREAYDRSVDVHISNIRQKLSALTADSITIETVRSIGYRI 225
                  6679**********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1881.90
//
Query:       EHU01626.1  [L=293]
Description: cysteine synthase B (O-acetylserine sulfhydrolase B) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-72  244.4   0.2    2.8e-72  243.6   0.2    1.4  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   0.2   1.6e-76   2.8e-72       3     294 .]       6     281 ..       4     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 1.6e-76
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallr 98 
                   ig+TPl+rl+rl+ + g +++lKlE+ np gS+KdR+a ++++++++    t++++++ea+sGN+g+alA++aa+ G+++++++p+++s+e+++++r
  EHU01626.1   6 HTIGNTPLIRLQRLTPDNGSEIWLKLEGNNPAGSVKDRAAWSMIHQAERRgeiTPGDQLIEATSGNTGIALAMIAAMKGYRLRLLMPDNMSQERQDAMR 104
                 679*******************************************88778************************************************ PP

                 HTT-EEEEE..CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECT CS
        PALP  99 llGaevvev..ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepeg 194
                 ++Gae+v++  +++ + a+++a+++aa+ ++ ++++qf+np++ +g y+t+g+E+++q +++ +++v ++G+ g+i+G++++lke+++ v+vig +p++
  EHU01626.1 105 AYGAELVLIgrEQGMEGARDLAQAMAAR-GEGTVLDQFNNPDNPLGhYQTTGPELWAQSNQRMTHFVSSMGTTGTITGVGRFLKEHKTGVKVIGLQPKE 202
                 *********887779999**********.*********************************************************************7 PP

                 TCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE- CS
        PALP 195 sdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvvilt 293
                  +++ + +          ++   +g+              +lvde++   ++ea e+mr larregi+++ ss+ ++a++ lr a++ +++ +vv+i++
  EHU01626.1 203 GSSIPGIR--------RWPQAYLPGIYR-----------PELVDEVIDMGQQEAEETMRALARREGIFCGVSSGGSVAGA-LRIASAHPGS-VVVAIVC 280
                 66666666........222333333333...........477777777********************************.9999999999.******9 PP

                 B CS
        PALP 294 g 294
                 +
  EHU01626.1 281 D 281
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2202.80
//
Query:       EHU01627.1  [L=362]
Description: ATP-binding component of an ABC superfamily sulfate/thiosulfate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-38  130.5   0.0      9e-38  129.9   0.0    1.3  1  ABC_tran         ABC transporter
      2e-09   37.2   0.0    2.8e-09   36.7   0.0    1.2  1  SMC_N            RecF/RecN/SMC N terminal domain
    3.3e-09   37.0   0.7      0.001   18.9   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    8.8e-05   23.0   1.1    0.00044   20.8   0.2    2.7  1  CysA_C_terminal  CysA C-terminal regulatory domain
     0.0001   22.7   0.5    0.00072   20.0   0.5    2.2  1  AAA_16           AAA ATPase domain
    0.00023   21.5   0.2     0.0011   19.3   0.2    1.9  1  AAA_22           AAA domain
     0.0006   19.8   0.1     0.0011   18.9   0.1    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00062   19.7   0.3      0.029   14.3   0.0    2.3  2  NACHT            NACHT domain
    0.00083   19.8   0.0       0.01   16.2   0.0    2.1  1  AAA              ATPase family associated with various cellul
    0.00093   18.1   0.0     0.0015   17.5   0.0    1.2  1  DLIC             Dynein light intermediate chain (DLIC)
    0.00099   18.5   0.0       0.85    8.9   0.0    2.1  2  ATPase           KaiC
     0.0011   18.8   0.1     0.0059   16.5   0.0    2.2  2  TOBE_3           TOBE-like domain
     0.0012   18.6   0.2       0.24   11.1   0.0    2.2  2  AAA_24           AAA domain
      0.003   17.2   0.0     0.0073   16.0   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
     0.0043   16.5   0.0       0.26   10.7   0.0    2.3  2  TniB             Bacterial TniB protein
     0.0064   16.7   0.1      0.067   13.4   0.1    2.3  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0085   16.4   0.0      0.028   14.7   0.0    1.8  2  AAA_28           AAA domain
     0.0097   16.5   0.0      0.027   15.0   0.0    1.7  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.011   16.2   0.1       0.02   15.4   0.1    1.4  1  AAA_23           AAA domain
      0.012   15.4   0.0      0.027   14.2   0.0    1.5  1  AAA_30           AAA domain
      0.016   14.7   0.1      0.097   12.1   0.1    2.0  1  RecA             recA bacterial DNA recombination protein
      0.016   14.7   0.0        1.1    8.6   0.0    2.2  2  PhoH             PhoH-like protein
      0.017   15.3   0.4      0.093   12.9   0.4    2.1  1  AAA_33           AAA domain
      0.027   14.0   0.2       0.48   10.0   0.0    2.3  2  AAA_25           AAA domain
      0.036   12.9   0.4          2    7.1   0.0    2.7  2  ABC_ATPase       Predicted ATPase of the ABC class
      0.043   13.8   0.0      0.075   13.0   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.048   13.7   0.0        0.3   11.1   0.0    2.0  2  AAA_14           AAA domain
      0.063   13.3   0.1        0.3   11.1   0.0    2.1  3  AAA_5            AAA domain (dynein-related subfamily)
      0.072   12.7   0.0       0.17   11.5   0.0    1.6  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.086   12.0   0.0      0.095   11.8   0.0    1.1  1  G-alpha          G-protein alpha subunit
       0.12   12.6   0.6       0.48   10.6   0.0    2.4  1  TOBE_2           TOBE domain
       0.13   12.0   0.0        0.2   11.4   0.0    1.3  1  DEAD             DEAD/DEAH box helicase
       0.14   11.8   0.0       0.45   10.1   0.0    1.7  2  SRP54            SRP54-type protein, GTPase domain
       0.14   11.2   0.1       0.66    9.0   0.0    1.9  2  T2SSE            Type II/IV secretion system protein
       0.15   12.3   0.0        2.5    8.4   0.0    2.2  2  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.17   11.8   0.1         21    4.9   0.0    2.3  2  APS_kinase       Adenylylsulphate kinase
       0.19   10.8   0.0       0.36   10.0   0.0    1.4  1  NB-ARC           NB-ARC domain
       0.21   11.4   0.0       0.33   10.8   0.0    1.6  1  ATPase_2         ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   1.9e-40     9e-38       1     136 [.      18     164 ..      18     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1.9e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l+++sl++  g++va++G++G+GK+tLl+++agl+++++G+i++ ++d+++  l+  ++++g+++q+  lf+++tv +n                 e +
  EHU01627.1  18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQNSGQIRFHEHDVSR--LHARDRKVGFVFQHYALFRHMTVFDNiafgltvlprrerpssaEIK 114
                 799************************************************..***************************************9999999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++l+ ++l++l+++      ++LSgGqkqrvalaral+ +p++lllDEp+
  EHU01627.1 115 NRVTRLLEMVQLSHLANRFP----AQLSGGQKQRVALARALAVEPQILLLDEPF 164
                 99************999998....*****************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     6e-12   2.8e-09      23     213 ..      27     212 ..       2     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 6e-12
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 s ++ a++Gp GSGK+ ll  i   L ++++ ++r ++ +  +++  + +  k + v  ++    + ++ ++  + +++   r+  s+ +i+++  +  
  EHU01627.1  27 SGQMVALLGPSGSGKTTLLRII-AGLEHQNSGQIRFHEHD--VSR-LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPSSAEIKNRVTRLL 121
                 456899*************999.67888888888887654..333.3456778889999999999999999999999999999999************* PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE...EEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf...ivislreemlekadklvgvtk 213
                 e+ +l + a+  + +LSgG+k+ vala  +A++   p+ + llDe   aLD++ +k++ + l++ +++  f   +v+  +ee +e ad++v +++
  EHU01627.1 122 EMVQLSHLANRFPAQLSGGQKQRVALARALAVE---PQ-ILLLDEPFGALDAQVRKELRRWLRQLHEELKFtsvFVTHDQEEAMEVADRVVVMSQ 212
                 ***************************999975...44.789********************999988655222676677788888888876654 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.2e-06     0.001       2      22 ..      31      51 ..      30      97 .. 0.75
   2 !   16.5   0.1   1.2e-05    0.0055     234     298 ..     134     196 ..     104     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.2e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +l Gp gsGK++LL+++ +l
  EHU01627.1 31 VALLGPSGSGKTTLLRIIAGL 51
                689***************999 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.2e-05
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 +++lS G+k+  al+ al+  +    +ll+DEp   L+ ++ ++l ++l++l++  +   +++TH+
  EHU01627.1 134 PAQLSGGQKQRVALARALAVEP---QILLLDEPFGALDAQVRKELRRWLRQLHEeLKFTSVFVTHD 196
                 6799******999999999999...9***********************99999544555888887 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   9.3e-07   0.00044       1      43 []     241     282 ..     241     282 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 9.3e-07
  CysA_C_terminal   1 NlFhGrvedGklriGglalpvPelagadgqevvayVRPhDlei 43 
                      N F+G v++ ++++G ++ p+  +  a++++v +++RP ++++
       EHU01627.1 241 NRFDGEVHGSQFHVGAHHWPLG-YTSAHQGAVDLFLRPWEIDV 282
                      99******99************.6666677999*****99997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.5   1.5e-06   0.00072      22      88 ..      26     108 ..      11     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd....................ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 +++++v l G+sG+GK++l+r ++  le +                    ++ f+ +++  +   +++ ++ ++++  ++l   +++
  EHU01627.1  26 PSGQMVALLGPSGSGKTTLLRIIA-GLEHQnsgqirfhehdvsrlhardrKVGFVFQHYALF---RHMTVFDNIAFGLTVLPRRERP 108
                 34489***************9999.4555545555555555555555554355555555555...2222233333333455555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   2.3e-06    0.0011       5      99 ..      28     162 ..      26     199 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.3e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevv.fvtlpsstsskdllrellralgl 66 
                  +++++ G+sG+GKTtllr ++   ++ + + +                                     + +v+ + + pss + k+  ++ll+ ++l
  EHU01627.1  28 GQMVALLGPSGSGKTTLLRIIAGLEHQNSGQIRfhehdvsrlhardrkvgfvfqhyalfrhmtvfdniaFGLTVLpRRERPSSAEIKNRVTRLLEMVQL 126
                 57999*****************99998888777999999999976666666666666554444433333333333444444444555555555555555 PP

      AAA_22  67 elkaerlsseellealeqalrarav...ielliiDE 99 
                 ++ a+r   +    + ++ + ara    +++l++DE
  EHU01627.1 127 SHLANRFPAQLSGGQKQRVALARALavePQILLLDE 162
                 555533333333355555555555566666777776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.3e-06    0.0011      90     132 ..      18      61 ..       2      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  l++++  + + ++++l+G+SG GK+tL+  +++ ++++ g+++ 
   EHU01627.1  18 LNDISLDIPSgQMVALLGPSGSGKTTLLRIIAGLEHQNSGQIRF 61 
                  556665555559*********************99999999985 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.2e-05     0.029       2      21 ..      30      49 ..      29      63 .. 0.83
   2 ?    3.4   0.1      0.13        63      90     131 ..     160     199 ..     101     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.2e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l G++GsGKTtLl+ +a
  EHU01627.1 30 MVALLGPSGSGKTTLLRIIA 49
                689*************9887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCC CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpra 131
                 lDe    l+++ ++++r++L++l ++  l+ +s+++t   + 
  EHU01627.1 160 LDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEE 199
                 57777778888899999***999999..99999999976655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.2e-05      0.01       2      66 ..      32     162 ..      31     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.2e-05
                 EEESSTTSSHHHHHHHHHHH....H.THEEEEEETTTCSSS.......................................................... CS
         AAA   2 llyGppGtGKTllakavake....l.gvefleisgsellsk.......................................................... 37 
                  l Gp G GKT+l + +a      + +++f e ++s+l                                                             
  EHU01627.1  32 ALLGPSGSGKTTLLRIIAGLehqnSgQIRFHEHDVSRLHARdrkvgfvfqhyalfrhmtvfdniafgltvlprrerpssaeiknrvtrllemvqlshla 130
                 699***************983333123667777777766334555555555555555555555555555555555555555555555555555555555 PP

                 ..STTHHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  38 ..yvgesekkirelfkeakeka.kpsilfiDE 66 
                   +  + +   ++ ++ a++ a +p il++DE
  EHU01627.1 131 nrFPAQLSGGQKQRVALARALAvEPQILLLDE 162
                 55666666666666666666666677777777 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.2e-06    0.0015      20      55 ..      23      58 ..      15      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.2e-06
        DLIC 20 sklPsgksvlvlGedgsGkttliaklqGveeekkGr 55
                  +Psg+ v +lG +gsGkttl+  + G+e+++ G+
  EHU01627.1 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQNSGQ 58
                568****************************99885 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0018      0.85      16      46 ..      25      53 ..      15     127 .. 0.72
   2 !    7.6   0.0    0.0047       2.2     138     170 ..     169     202 ..     164     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
      ATPase 16 ipegrvvlitGepGtGKtifalqFlikgaek 46
                ip+g++v + G +G+GKt++    +i g+e+
  EHU01627.1 25 IPSGQMVALLGPSGSGKTTLLR--IIAGLEH 53
                8*****************9865..5666555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0047
      ATPase 138 avaReilrqlvrvl.kklgvTailvsekssseea 170
                 a++R++lr+ +r+l ++l+ T+++v+  ++++ +
  EHU01627.1 169 AQVRKELRRWLRQLhEELKFTSVFVTHDQEEAME 202
                 689***********99**********96665443 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.9   1.8e+03      34      42 ..     277     285 ..     266     290 .. 0.81
   2 !   16.5   0.0   1.3e-05    0.0059       6      57 ..     291     339 ..     286     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.9
      TOBE_3  34 liEvelprd 42 
                 ++E++++r 
  EHU01627.1 277 PWEIDVSRK 285
                 9*****996 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.3e-05
      TOBE_3   6 glpatvrrirpvGpivRlELerlgdtgeliEvelprdrfeelglaeGetvyl 57 
                  lp++v  ++p G+  +l ++++g+++e++   +  d+    ++ +Ge++++
  EHU01627.1 291 PLPVQVLEVSPRGHFWQLVVQPAGWQSEPFSLVFDGDQ---TAPLRGERLFV 339
                 79****************************99999999...57777998887 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0005      0.24       2      20 ..      28      46 ..      27      55 .. 0.88
   2 ?    5.4   0.0     0.028        13     106     140 ..     170     205 ..     165     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0005
      AAA_24  2 klkiliyGpsgiGKTtlak 20
                ++++++ Gpsg+GKTtl++
  EHU01627.1 28 GQMVALLGPSGSGKTTLLR 46
                6789************987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.028
      AAA_24 106 elaeefrrllkkl.qelrknvifiahektrkdedpe 140
                 ++++e+rr+l++l +el+ + +f+ h +++ +e  +
  EHU01627.1 170 QVRKELRRWLRQLhEELKFTSVFVTHDQEEAMEVAD 205
                 799*********6156777**********9988664 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-05    0.0073      18      39 ..      24      45 ..      17      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-05
      AAA_29 18 eidlkg.atlltGpsGsGKSTll 39
                +i  +g ++ l GpsGsGK+Tll
  EHU01627.1 24 DIP-SGqMVALLGPSGSGKTTLL 45
                554.55699*************8 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.089        42      37      56 ..      30      49 ..      17      76 .. 0.80
   2 !   10.7   0.0   0.00055      0.26      91     161 ..     126     194 ..     105     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.089
        TniB 37 nlllvGdsnnGKtmivekFa 56
                 + l+G+s  GKt++++  a
  EHU01627.1 30 MVALLGPSGSGKTTLLRIIA 49
                5789**********998665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00055
        TniB  91 LealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvG 161
                 L +l  ++ a+ +  ++++ +l+   ++++++L++DE   +l   a+ ++e+   l++L++elk + v v 
  EHU01627.1 126 LSHLANRFPAQLSGGQKQRVALARALAVEPQILLLDEPFGAL--DAQVRKELRRWLRQLHEELKFTSVFVT 194
                 556666666666777888888888889999*******99999..56667899************9999874 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   0.00014     0.067      33      89 ..     137     180 ..     127     181 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00014
     SbcCD_C  33 lSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 lSGG+kq         ala ++         +++++LDE F+ lD++ +++l + l+
  EHU01627.1 137 LSGGQKQR-------VALARALAV------EPQILLLDEPFGALDAQVRKELRRWLR 180
                 56666632.......223333333......4899**************999877665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.9e-05     0.028       2      39 ..      31      75 ..      30     121 .. 0.68
   2 ?   -1.3   0.0       4.8   2.3e+03     134     157 ..     172     194 ..     136     212 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.9e-05
      AAA_28  2 ivitGgestGKTtlleaLa..ar....gypvv.pEaareileekl 39
                ++++G++++GKTtll+ +a  ++    +++ + +++ r   +++ 
  EHU01627.1 31 VALLGPSGSGKTTLLRIIAglEHqnsgQIRFHeHDVSRLHARDRK 75
                899**************9988445576677777777777776665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.8
      AAA_28 134 reaiderlrealrelgipviivps 157
                 r+++ ++lr++ +el +  + v +
  EHU01627.1 172 RKELRRWLRQLHEELKFTSVFV-T 194
                 3444444444444444444444.3 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.8e-05     0.027       1      32 [.      31      60 ..      31      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.8e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdva 32
                ++l G++G+GKttl + ++ ++  ++n++++ 
  EHU01627.1 31 VALLGPSGSGKTTLLRIIAGLE--HQNSGQIR 60
                6899**************8887..44444443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   4.2e-05      0.02      14      39 ..      22      48 ..       2      61 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.2e-05
      AAA_23 14 eidF.skgltlItGpNGaGKTTildAi 39
                ++d  s  ++++ Gp G+GKTT+l+ i
  EHU01627.1 22 SLDIpSGQMVALLGPSGSGKTTLLRII 48
                3344788999**************988 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.7e-05     0.027      17      49 ..      28      59 ..      24      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrv 49
                g ++++l Gp G+GKtt+l+ ++ + +++ g++
  EHU01627.1 28 G-QMVALLGPSGSGKTTLLRIIAGLEHQNSGQI 59
                4.58999***************99988875555 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00021     0.097      50      86 ..      25      61 ..       2      78 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00021
                EETTSEEEEEESTTSSHHHHHHHHHHHHHHT.T--EEE CS
        RecA 50 lpkGriieiyGpessGkttlalhaiaeaqkk.ggvaaf 86
                +p G+++ + Gp  sGkttl l++ia  +++ +g++ f
  EHU01627.1 25 IPSGQMVALLGPSGSGKTTL-LRIIAGLEHQnSGQIRF 61
                7******************9.88888765441455555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0024       1.1      18      47 ..      27      57 ..       8      68 .. 0.74
   2 ?    3.9   0.0     0.068        32      53      91 ..     151     190 ..     135     216 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0024
                H-SEEEEE--TTSSTT.HHHHHHHHHHHHTT CS
        PhoH 18 kndivfaiGpaGtGKt.ylavalavealkkk 47
                + ++v  +Gp+G+GKt +l + +++e  +++
  EHU01627.1 27 SGQMVALLGPSGSGKTtLLRIIAGLEHQNSG 57
                7789***********8245666677666555 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.068
                 EEEE-S--T.T----SS---------TTTHHHHHHHTTTS CS
        PhoH  53 iltrpavea.geelGflpgdleekvdpylrplydaLkdll 91 
                 + + p++   +e  G+l+ ++++ ++ +lr l+++Lk + 
  EHU01627.1 151 LAVEPQILLlDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
                 334444433699************************9765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4    0.0002     0.093       1      32 [.      30      65 ..      30     206 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0002
      AAA_33  1 lvllvGlpGsGKstlaerl....lkklgavllssdt 32
                +v l G++GsGK+tl++ +    +++ g ++  + +
  EHU01627.1 30 MVALLGPSGSGKTTLLRIIagleHQNSGQIRFHEHD 65
                57899**********997744444444455555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0     0.001      0.48      30      50 ..      25      45 ..       7      49 .. 0.89
   2 ?    1.8   0.1      0.32   1.5e+02      83      97 ..     172     186 ..     108     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      AAA_25 30 lpagelallaGapgtGKttla 50
                +p g  ++l G++g+GKttl+
  EHU01627.1 25 IPSGQMVALLGPSGSGKTTLL 45
                699****************97 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.32
      AAA_25  83 edelrrRlravgeal 97 
                 ++elrr+lr+++e+l
  EHU01627.1 172 RKELRRWLRQLHEEL 186
                 234444444444444 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.16        74     241     264 ..      24      48 ..      21      53 .. 0.87
   2 ?    7.1   0.0    0.0043         2     378     417 ..     177     216 ..     131     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  ip G ++++ G+   GK+TLL+ +
  EHU01627.1  24 DIPSGqMVALLGPSGSGKTTLLRII 48 
                 68999899999***********976 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0043
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEE CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilmeeykpk 417
                   +r+l+++l  +++ v+   ++ ++vAd+v++m + +++
  EHU01627.1 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGSIE 216
                 56799*****************************986655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00016     0.075      18      45 ..      21      53 ..       3     106 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00016
                H......TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 18 l......gdvilLeGdLGaGKTtlvrglakalgv 45
                +      g++++L G+ G+GKTtl r +a +l++
  EHU01627.1 21 IsldipsGQMVALLGPSGSGKTTLLRIIA-GLEH 53
                0334455678***************9775.4444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00063       0.3       3      59 ..      29      82 ..      27      99 .. 0.61
   2 ?    0.1   0.0       1.7   7.9e+02      65      98 ..     155     194 ..     121     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00063
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilek 59
                +++++ G+  +GKTtll+ ++  +    ++   i + +++ ++l   ++   +++++
  EHU01627.1 29 QMVALLGPSGSGKTTLLRIIAGLEH---QNSGQIRFHEHDVSRLHARDRKVGFVFQH 82
                7899************988875555...55555555555554444333334444444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.7
      AAA_14  65 ktylflDE......iqevpewekalkslvdegknldvivt 98 
                  ++l+lDE      +q  +e++++l++l++e k   v+vt
  EHU01627.1 155 PQILLLDEpfgaldAQVRKELRRWLRQLHEELKFTSVFVT 194
                 4567777733322245559999999999998877788877 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00063       0.3       2      23 ..      31      52 ..      30      65 .. 0.82
   2 ?   -1.1   0.0       3.7   1.8e+03      59      78 ..     147     167 ..     127     231 .. 0.71
   3 ?   -2.4   0.0       9.5   4.5e+03      75      75 ..     225     225 ..     164     251 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00063
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                v L+Gp+G+gK++l + +a + 
  EHU01627.1 31 VALLGPSGSGKTTLLRIIAGLE 52
                679*************999775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.7
                 ------.G-SEEEEESGGG-- CS
       AAA_5  59 lvraar.egeilvlDEverae 78 
                 l ra   e++il+lDE + a 
  EHU01627.1 147 LARALAvEPQILLLDEPFGAL 167
                 444444677788888755444 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 9.5
                 G CS
       AAA_5  75 e 75 
                 +
  EHU01627.1 225 W 225
                 2 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00035      0.17       3      22 ..      31      52 ..      29      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
                EEEEESTTCCHHHHHHHHH..C CS
        cobW  3 tvltGflGsGKTtLlnhll..e 22
                + l G+ GsGKTtLl+ +   e
  EHU01627.1 31 VALLGPSGSGKTTLLRIIAglE 52
                6789***********9887553 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002     0.095      26     103 ..      31     122 ..       6     242 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
                 EEEEESTTSSHHHHHHHHHHHCS--.....--HHHHHCCHH.......HHHHHHHHHHHHHHHHHHH....TT.......HHHC-SS-SCCCS- CS
     G-alpha  26 llllGqseSGKsTilkqlkllykkg.....fseeelatwra.......viqlnivrsiktileales....leselsesfelqelkerldplkk 103
                 + llG s+SGK+T+l+ +  l+ ++     f+e ++  + a       v q+  +    t+++++ +    l  +  e+++++e+k+r+ +l++
  EHU01627.1  31 VALLGPSGSGKTTLLRIIAGLEHQNsgqirFHEHDVSRLHArdrkvgfVFQHYALFRHMTVFDNIAFgltvL--PRRERPSSAEIKNRVTRLLE 122
                 789***************966644448888666655433333355555444444444444444444433221..22223344444444444443 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     0.001      0.48       3      71 ..     275     344 ..     273     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.001
      TOBE_2   3 iRPEklrlaaagg.anglsGtVedveylGsstryvvelag.gqlvvvrqpnadrdsalapGdtVelswdpd 71 
                 +RP  + ++ ++  ++ l+ +V +v+ +G++ ++vv+ ag +++ +  + ++d ++a+  G+++ ++++ +
  EHU01627.1 275 LRPWEIDVSRKSSlETPLPVQVLEVSPRGHFWQLVVQPAGwQSEPFSLVFDGD-QTAPLRGERLFVGLQQA 344
                 78888888633333579*********************998888888888888.78999******999876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00043       0.2      11     107 ..      25     214 ..      15     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00043
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS.............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................. RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyetkgktg.............................................................. 47 
                 i +g+ v + ++ GsGKT+   i +   + +  +++g                                                              
  EHU01627.1  25 IPSGQMVALLGPSGSGKTTLLRIIAG--LEH--QNSGqirfhehdvsrlhardrkvgfvfqhyalfrhmtvfdniafgltvlprrerpssaeiknrvtr 119
                 4489999***********98655554..422..222235577778888999999999****************************************** PP

                 ...................................-EEEEE.ESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHHHHHHHTTCSEEEEEHHH CS
                 ...................................xxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  48 ...................................pkaliv.ePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardqlskldngvdivvgtpgr 107
                                                    p++l++ eP  +L  q+ ++l++++ +++  l+  +++    ++dq ++++   ++vv+  g 
  EHU01627.1 120 llemvqlshlanrfpaqlsggqkqrvalaralavePQILLLdEPFGALDAQVRKELRRWLRQLHeeLKFTSVF---VTHDQEEAMEVADRVVVMSQGS 214
                 ****************************999999977766658999999999999999999754233333333...3344555553335566665555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00095      0.45       3      45 ..      30      72 ..      28      75 .. 0.88
   2 ?   -1.6   0.0       3.7   1.7e+03     118     150 ..     164     196 ..     137     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00095
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAv 45
                +++l+G+ G+GKTt l  +a l +++  ++ +   D+ R  A 
  EHU01627.1 30 MVALLGPSGSGKTTLLRIIAGLEHQNSGQIRFHEHDVSRLHAR 72
                6899*************99999999999999999999998775 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.7
                 EEEEETTBHTHHHHHHHHHHHHSSCSEEEEEST CS
       SRP54 118 llvldattgqeavkqakaFkeavgitgviltkl 150
                 +  lda + +e  +  ++ +e++++t+v +t  
  EHU01627.1 164 FGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196
                 556778888888888888888888888888764 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0014      0.66     128     151 ..      27      50 ..       6      69 .. 0.78
   2 ?   -0.8   0.0       1.3   6.2e+02      21      63 ..     173     216 ..     159     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
       T2SSE 128 erglilvsGgTgsGKttllyallk 151
                 + +++ + G+ gsGKttll ++  
  EHU01627.1  27 SGQMVALLGPSGSGKTTLLRIIAG 50 
                 56778889***********87654 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
       T2SSE  21 kpervkvrervdgielrev.eelekaalerlisriaalakldis 63 
                 k+ r ++r+  ++++   v  + ++++++ ++ r+ ++++ +i+
  EHU01627.1 173 KELRRWLRQLHEELKFTSVfVTHDQEEAMEVADRVVVMSQGSIE 216
                 55556666666665444431456778899999999999998886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0052       2.5       2      20 ..      31      49 ..      30      77 .. 0.79
   2 ?    1.6   0.0      0.67   3.1e+02      87     112 ..     167     192 ..     138     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
                EEEESSTTSSHHHHHHCHC CS
         Roc  2 vvlvGdsgvGKtsllkrfv 20
                v l+G sg+GKt+ll+ + 
  EHU01627.1 31 VALLGPSGSGKTTLLRIIA 49
                689***********98665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.67
                 EEGHHHHCHHHHHHHHHHHCSSS-EE CS
         Roc  87 ydsrssenlkeWlkelkkvagkspvi 112
                 +d++  ++l++Wl++l+++ + + v+
  EHU01627.1 167 LDAQVRKELRRWLRQLHEELKFTSVF 192
                 57888899********9987765555 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.059        28       2      23 ..      28      49 ..      27      79 .. 0.78
   2 ?    4.9   0.0     0.045        21      87     117 ..     174     203 ..     166     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.059
                -EEEEEESSTTSSHHHHHHHHH CS
  APS_kinase  2 gvvvwltGlsgsGKstianale 23
                g +v l G sgsGK+t+ + ++
  EHU01627.1 28 GQMVALLGPSGSGKTTLLRIIA 49
                5678899*********987765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.045
                 HHHHHHHHHHHCHTEEEEEEEE--HHHHHHH CS
  APS_kinase  87 eeReaarelleealkfievfvdtplevceer 117
                 e R+  r+l+ee lkf  vfv  + e+++e 
  EHU01627.1 174 ELRRWLRQLHEE-LKFTSVFVTHDQEEAMEV 203
                 5688999***97.7*******9999887764 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00076      0.36      21      41 ..      29      49 ..      16      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00076
                EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqil 41
                 +val G  G+GKttl++ i 
  EHU01627.1 29 QMVALLGPSGSGKTTLLRIIA 49
                489*************98775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00071      0.33      22      47 ..      30      56 ..      12     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00071
    ATPase_2 22 iyfiYGpegsGKtaLlkeiienl.edk 47
                ++ + Gp gsGKt+Ll+ i+    +++
  EHU01627.1 30 MVALLGPSGSGKTTLLRIIAGLEhQNS 56
                56678***********97776552333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2474.10
//
Query:       EHU01628.1  [L=291]
Description: membrane component of an ABC superfamily sulfate/thiosulfate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-13   49.5  14.4      4e-13   49.5  14.4    2.3  2  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
      0.037   12.5   0.2      0.053   12.0   0.2    1.2  1  Rhabdo_glycop  Rhabdovirus spike glycoprotein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   6.5    0.0012        10     128     183 ..      41      94 ..      20      96 .. 0.79
   2 !   49.5  14.4   4.5e-17     4e-13       2     179 ..      81     272 ..      80     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
  BPD_transp_1 128 leflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   + + +  +Glg++l + + + ++++i   +++ ++++++++nlv+  l ++l  r+
    EHU01628.1  41 IFWEALHSGLGLTLRNLTDSDMLHAIW--LTVLVALITVPVNLVFGTLLAWLVTRF 94 
                   444444578***************999..*********************999886 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 4.5e-17
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfv..laillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   +++G l+a   +++ +++++ll++l+++++++ ++v  l+ ll++            +++  + +++ ++++++++ + p+v++    ++ s  +  
    EHU01628.1  81 LVFGTLLAwlvTRFTFPGRQLLLTLFDIPFAVSPVVagLMYLLFW-GingpaggwldAHNIQVMFTWPGMVLVTVFVTCPFVVRELVPVMLSQGSHE 176
                   678888888888********************9999444444444.36*******996666677788887777777777777777778888888888 PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                    eaa +lGas wq+fr+v+lPn+   ++ g++l+ ++++g++ +++ + ++      +++l   +l +dy+     g++++++++ ++ +++ +l  
    EHU01628.1 177 DEAAVLLGASGWQMFRRVTLPNIRWAMLYGVVLTNARAIGEFGAVSVVSGSIRgetYTLPLQVELLHQDYNTV---GAFTAAALLTVMAILTLFLKS 270
                   9**********************************************97554346555555566666777733...444444444444444444444 PP

  BPD_transp_1 178 ll 179
                   ++
    EHU01628.1 271 IV 272
                   44 PP

>> Rhabdo_glycop  Rhabdovirus spike glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   5.9e-06     0.053     447     484 ..       6      43 ..       1      53 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-06
  Rhabdo_glycop 447 kiesvdlglshWsffvlisaligiflvLlvalavCikr 484
                    ++++ d +  +W++++li+  ++i ++Llv+ +v i +
     EHU01628.1   6 QLNHADRQPVNWGKWLLIGTGVLISVLLLVVPMVSIFW 43 
                    68889999********************9998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2216.10
//
Query:       EHU01629.1  [L=277]
Description: membrane component of an ABC superfamily sulfate/thiosulfate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-32  112.8  11.9    1.6e-32  112.8  11.9    1.8  2  BPD_transp_1     Binding-protein-dependent transport system i
  ------ inclusion threshold ------
        1.1    9.2  13.2      0.045   13.7   1.2    2.4  3  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3     0.065   5.8e+02     117     142 ..      16      37 ..       5      72 .. 0.57
   2 !  112.8  11.9   1.7e-36   1.6e-32       3     183 ..      76     274 ..      74     276 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.065
  BPD_transp_1 117 afggllggavlleflgswpGlgtlll 142
                   ++g +l  + l+++l     ++ l++
    EHU01629.1  16 SLGTSLLFTCLILLLP----ISALIM 37 
                   4444433333333333....222222 PP

  == domain 2  score: 112.8 bits;  conditional E-value: 1.7e-36
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   l+G+l+a   ++++++++ ll++l++++++lP+ v ++ l  +f            ++ ++ +++++++++++++++p+v+++++ +l++l  +++e
    EHU01629.1  76 LFGMLMAwvlTRYRFPGRTLLDGLMDLPFALPTAVAGLTLAGLFsvngwygqwfaHFDIKISYTWIGIALAMAFTSIPFVVRTVQPVLEELGPEYEE 172
                   79*********************************99999988899999*****999999************************************* PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                   aa +lGa++wq fr+vvlP ++p +++g +l+f+++lg++ ++ f++++ +      +++++  ++++dy+++s +++ ++++a lll+++++ lq 
    EHU01629.1 173 AAQTLGATPWQSFRRVVLPEVAPALLAGTALSFTRSLGEFGAVIFIAGNIAwktevTSLMIFVRLQEFDYPAAS-AIASVILAASLLLLFAINTLQS 268
                   ***********************************************9999***********************.********************** PP

  BPD_transp_1 178 lldprv 183
                    + +r+
    EHU01629.1 269 RFGRRL 274
                   **9997 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   3.4      0.03   2.7e+02      56     151 ..      22     123 ..      15     133 .. 0.58
   2 ?    1.6   1.5     0.026   2.3e+02      17      95 ..      67     146 ..      58     181 .. 0.68
   3 ?   13.7   1.2   5.1e-06     0.045      51     124 ..     201     274 ..     172     277 .] 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.03
  Abhydrolase_9_N  56 lavvalvvllvalvlaarwQrelralmgaep.lgaaeyllvllvallvfalllll.grllralvrllarllgrv.....lprrvaavlgvlvvv 142
                      l+++++++l + ++  +  Q +l++  ++ + ++  ++ +v l+++ v+ l+ +l g l+ +++ + +   gr      +  + a + +v+ ++
       EHU01629.1  22 LFTCLILLLPISALIMQLSQMTLQQYWDVVTnPQLIAAYKVTLLSAGVASLFNALfGMLMAWVLTRYR-FPGRTlldglMDLPFALPTAVAGLT 114
                      55556677777777777778888887776554666666666666666665555440444444444433.3333322222556666666666666 PP

  Abhydrolase_9_N 143 vlvvllvdg 151
                      ++ ++ v+g
       EHU01629.1 115 LAGLFSVNG 123
                      666666666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.026
  Abhydrolase_9_N  17 sGlsaaiGYglGvllawlvrrllrlpepsrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaep.lgaaeyllv 95 
                      +G++  +  ++G+l+aw++ r+++  ++       l  al ++++ ++l+ l+    w  +  a ++++  +++   +l+
       EHU01629.1  67 AGVASLFNALFGMLMAWVLTRYRFPGRTLLDGLMDLPFALPTAVAGLTLAGLFSVNGWYGQWFAHFDIKIsYTWIGIALA 146
                      56666666678888999988888755555555556666777777777777777777777766666666543444444444 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 5.1e-06
  Abhydrolase_9_N  51 rlrlalavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfalllllgrllralvrllarll 124
                      ++  ++  ++  +++++++    w++e+ +lm   +l+  +y+++ ++a +++a+ lll  ++  l +++ r+l
       EHU01629.1 201 TALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFAINTLQSRFGRRL 274
                      44444555566889999999*************************************99999999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2111.46
//
Query:       EHU01630.1  [L=338]
Description: periplasmic-binding component of an ABC superfamily thiosulfate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-43  148.7   0.2    2.6e-43  148.4   0.2    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    2.5e-15   57.2   3.4    3.7e-15   56.7   3.4    1.2  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    2.1e-11   44.2   3.9    5.3e-11   42.8   3.6    1.5  2  SBP_bac_8   Bacterial extracellular solute-binding protein
    5.6e-09   35.8   0.3      9e-09   35.1   0.3    1.2  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    6.9e-05   22.7   0.2     0.0011   18.8   0.2    2.1  1  PBP_like_2  PBP superfamily domain
     0.0013   17.9   0.0      0.002   17.3   0.0    1.3  1  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.2   8.5e-47   2.6e-43      15     230 .]      46     286 ..      34     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 8.5e-47
                 HHHHHH.HHHH-..--EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGG.......GG-EEEEEEEEEEEESTT-TT---SHHHHHHSS CS
  SBP_bac_11  15 elaaaF.eahtg..vkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqa.......esavplassplviavpkgnpkkikgwadLlkpg 103
                   + ++ ++h++  +++++s++gs+k+a +i++g r+Dv+i  + + ++ l+++g++ +       +++++  +s+++++v+kgnpk+i++w dL++++
  EHU01630.1  46 PFVSQWdARHPDdkLTIKMSHAGSSKQALAILQGLRADVVIYNQVTDVQVLHDKGKLIPadwqtrlPNHSSPFYSTMAFLVRKGNPKQIHDWSDLTRND 144
                 56778856687788******************************************9999*************************************** PP

                 --EEEE--T-TTTTHH.H.HHHGGG--.........HHHHHHHHHTEEEEESSHHHHHHH.HHTTT-SEEEEEHHHH..H..H.STTSSEEEE--TTT- CS
  SBP_bac_11 104 lklavadPttspsGlaal.alleaaga.........qellkalekkvvklgessrqllta.veageadagivyesea..kaae.ngdkleavylpegln 188
                 +kl++++P+ts+ G++++ a++ aa++         +++++++ k+v ++ ++ r ++t+ +e+g  d++i+ ese+  ++++  +d+ e+v ++ +++
  EHU01630.1 145 VKLIFPNPKTSGNGRYTYlAAWGAAEKadggdqaktRAWMTQFLKNVEVFDTGGRGATTTfAERGLGDVLISFESEVntIRNQyGKDDYEVVVPKTDIL 243
                 ***************554455555544555789999**************99997655553889*************7744444999************ PP

                 -...EEEEEEEE-T....T--HHHHHHHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 189 ldpldypaavlkka....akreaAraFlafLrspeaqailrkyGfr 230
                 +   ++p+a+++k+    + + aA+a+l++L+speaq+i++++ +r
  EHU01630.1 244 A---EFPVAWVDKNvehnKTADAAKAYLTWLYSPEAQKIITDFYYR 286
                 6...667776665444449999********************9998 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   3.4   1.2e-18   3.7e-15       8     315 .]      41     278 ..      34     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.2e-18
                 HHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHT.TECTTCCTEEEEHHHHTHHHHCEE CS
   SBP_bac_1   8 aalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkay.lapgvkdaadklsssvlpkildsk 105
                  al+a+++ ++ ++hp+ k +i+ +  gs +q  +lai +G  + Dv++            +++++++ + ++  l+p +++  +++ s          
  EHU01630.1  41 VALNAPFVSQWDARHPDDKLTIKMSHAGSSKQ--ALAILQGLRA-DVVIY-----------NQVTDVQVLHDKGkLIPADWQTRLPNHS---------- 115
                 5899****************************..********77.*****...........7888887777777333333333333333.......... PP

                 EESEEEEEEEEEEE...ETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHH CS
   SBP_bac_1 106 vlyvPlyaargliY...NkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylv 201
                     P+y+++++ +   N++  +         W++l++ ++kl+ +++k+         sg++ y++la ++ +                  +a++  +
  EHU01630.1 116 ---SPFYSTMAFLVrkgNPKQIH--------DWSDLTRNDVKLIFPNPKT---------SGNGRYTYLAAWGAAE-----------------KADGGDQ 177
                 ...48888899999667777777........9******************.........8888888765444444.................3444444 PP

                 HHHHHHHHHHHHHTTEEECSSHHHHHHHHH.TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCST.. CS
   SBP_bac_1 202 klyavanltkelkgkgaenkdgaaalalfe.aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgskn.. 297
                 ++   ++ t+ lk++ + +++g+ a++ f+ +G  +++i++ +++++  ++++k ++++  +k ++  +++                  ++ k+  +  
  EHU01630.1 178 AKTRAWM-TQFLKNVEVFDTGGRGATTTFAeRGLGDVLISFESEVNTIRNQYGKDDYEVVVPKTDILAEFPV----------------AWVDKNVEHnk 259
                 4444443.6699******************99********************************99777776................88999999965 PP

                 .HHHHHHHHHHHTSHHHHH CS
   SBP_bac_1 298 .peaAkkFldfllspeaqa 315
                   +aAk++l++l+speaq+
  EHU01630.1 260 tADAAKAYLTWLYSPEAQK 278
                 5666*************96 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.43   1.3e+03     158     182 ..      59      94 ..       5     108 .. 0.65
   2 !   42.8   3.6   1.8e-14   5.3e-11      91     256 ..     119     281 ..      83     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.43
                 ............HHHHHHHHHHHHTT-EE-S..--S CS
   SBP_bac_8 158 l...........kealellkklkdngktydtgadav 182
                 +           k+al++l+ l++++++y+  +d++
  EHU01630.1  59 KltikmshagssKQALAILQGLRADVVIYNQVTDVQ 94 
                 123355555566999999999999998887766655 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 1.8e-14
                 EEEE-EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-SEGG---.GGG.GGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S...--SSTTT CS
   SBP_bac_8  91 setpyvliynkdllekaedpktwdellaaakklkgkfglpdpas.gwl.qaallakdgksldddggkdglkealellkklkdngktydtg.adavsefa 186
                 ++t +++ ++k   +   ++ +w++l+    ++  k ++p+p + g++ +++l a +g+  ++d    ++++++++++++ +n+ ++dtg   a+  fa
  EHU01630.1 119 YST-MAFLVRKGNPK---QIHDWSDLTR--NDV--KLIFPNPKTsGNGrYTYLAA-WGAAEKAD--GGDQAKTRAWMTQFLKNVEVFDTGgRGATTTFA 206
                 244.67777777755...7999999999..555..88999988537773566666.99999999..66789**************99988445555777 PP

                 .TTSBSEEEE-TTHHHHHH-T.TT.SEEEE--S--EEEEEEEEEEBTTS-HHHH..HHHHHHHHHTTSHHHHHHH CS
   SBP_bac_8 187 .nGevaftingswdiaaaqka.gk.klgaivpkqgsfaggkglavpknaknedl..aAldFlkwltspenqaala 256
                   G     i++++++++++++ gk +++++vpk+  +a +   +v kn ++ +   aA++ l+wl+spe+q+   
  EHU01630.1 207 eRGLGDVLISFESEVNTIRNQyGKdDYEVVVPKTDILAEFPVAWVDKNVEHNKTadAAKAYLTWLYSPEAQKIIT 281
                 57788888899999999998867559*******************776444444469**************9765 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.3     3e-12     9e-09      75     233 ..     135     305 ..     117     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 3e-12
   SBP_bac_6  75 ksWaDLldPeykgkvalpgnng.sdlfealllalyk....dfg.edgvkkllrnlkanlhpaq.mvkaagslesge..pavsvvpyffadilpekkkgk 164
                  +W+DL++ +   k  +p++++ ++ +++ l+a+      d g +++ ++++ ++ +n+     + + a++  +++  + v +++    ++++++++ +
  EHU01630.1 135 HDWSDLTRNDV--KLIFPNPKTsGNGRYTYLAAWGAaekaDGGdQAKTRAWMTQFLKNVEVFDtGGRGATTTFAERglGDVLISFESEVNTIRNQYGKD 231
                 68999999987..8888888887555555555555567889999***************9999877777776666635556666666667778887777 PP

   SBP_bac_6 165 nlkvvwPed.Galvspifmlvkkg...kkkelakafidfllspevqailakagg..vfPvvtnpavlnelpegak 233
                  ++vv+P+    + +p++++ k+    k+++ aka++ +l+spe+q+i++++++  + P  ++ ++++++p ++ 
  EHU01630.1 232 DYEVVVPKTdILAEFPVAWVDKNVehnKTADAAKAYLTWLYSPEAQKIITDFYYrvNNPQ-LMEQQKDRFPATQL 305
                 ********96777899999999989999*************************7433333.66666666666555 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   3.5e-07    0.0011      36     282 .]      56     275 ..      20     275 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.5e-07
  PBP_like_2  36 pgak..vnyastGSgagikalrngd..........vdfagsdrplteseia.agwaangaggliqvpvaigaialvvnkdnplnlsreaLakIfsgkIt 121
                 p+ k  ++ ++ GS++  +a+++g           +d+  ++++    +++ a+w+++    + + +  ++  a+ v+k np++             I 
  EHU01630.1  56 PDDKltIKMSHAGSSKQALAILQGLradvviynqvTDVQVLHDKG---KLIpADWQTRL---PNHSSPFYSTMAFLVRKGNPKQ-------------IH 135
                 444422666999999999999999997777777776666666443...23336777777...8889999999999999999999.............67 PP

  PBP_like_2 122 nWndvlglpadgpIkvvhrsdgsg.ttflfstalaeqgpwtasgigasgsegvasav.snngaigyvsvaywlavkgysladvtngagkfvlptaataa 218
                 +W+d    ++  ++k+++++++ +   ++  t+la +  w+a + +a g +++++++ +++     v+v + + + g+++++ + g g + +++    +
  EHU01630.1 136 DWSD----LTRNDVKLIFPNPKTSgNGRY--TYLA-A--WGA-AEKADGGDQAKTRAwMTQFL-KNVEVFDTGGR-GATTTFAERGLGDVLISF----E 218
                 7887....336677777754443312222..5554.3..343.45788899999999777775.77777666656.******************....6 PP

  PBP_like_2 219 salkvakiasnplawslqpveeniadgayPlsrftyiivyqpyayhgnnaalakaFldyllsde 282
                 s+++   i + +++ +++ v+    +++  l  f  + v+++ + h ++a++aka+l++l+s e
  EHU01630.1 219 SEVNT--IRNQYGKDDYEVVV----PKTDILAEFPVAWVDKN-VEHNKTADAAKAYLTWLYSPE 275
                 75555..43355666666665....77777777777777774.666677*************76 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.8e-07     0.002      68     101 ..     119     152 ..     114     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.8e-07
                 -HCHCCCCHCCHHHS--BGGGC-S-B-EEEEE-T CS
    PBP_like  68 rreqglvvakgnpkkitnwkdladaplrlvnRet 101
                 +  + ++v+kgnpk+i++w+dl++ ++ l+ ++ 
  EHU01630.1 119 YSTMAFLVRKGNPKQIHDWSDLTRNDVKLIFPNP 152
                 667889****************776666664443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2348.40
//
Query:       EHU01631.1  [L=206]
Description: hypothetical protein CKS_0059 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-70  234.0   0.2    9.3e-70  233.7   0.2    1.1  1  DUF1131   Protein of unknown function (DUF1131)


Domain annotation for each model (and alignments):
>> DUF1131  Protein of unknown function (DUF1131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.7   0.2   5.2e-74   9.3e-70       2     170 .]      40     206 .]      39     206 .] 0.99

  Alignments for each domain:
  == domain 1  score: 233.7 bits;  conditional E-value: 5.2e-74
     DUF1131   2 lswsslsPlnWfgsslevseqGvgeitastalteeaieealdgdyrlrsGmetenGkivsifqalkddkvklvisGqekgkveridvldkeiktewgvk 100
                 ++w+s+ P+nWfg sl++s+qGvg+i+++ta++e+ai+++l+g+y lr+Gm+ +nG++vs++qa+kd +vklvi+G  +++v+ri+v+d++i++++g+k
  EHU01631.1  40 YHWASALPWNWFGPSLTISDQGVGGINSATAMNESAIKDGLKGNYDLRQGMRGQNGQVVSFWQAMKDGQVKLVIYG--QSQVDRIEVTDNDIASADGSK 136
                 79**************************************************************************..99******************* PP

     DUF1131 101 iGtpfsdlyskafgaCkkgseddeesveCkapqskhvsyvfsGeWeGPeglmPsddtlknWkvskivWrr 170
                 iG++fs+ y+kaf++C  +++ d+++veC+ p s h+ yv+sG+W+GPegl+P+ddtlk+Wk+sk vW+r
  EHU01631.1 137 IGDAFSARYDKAFNNCIVAAGLDNHDVECRVPGSPHLRYVYSGTWHGPEGLLPADDTLKSWKLSKFVWQR 206
                 ********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1464.14
//
Query:       EHU01632.1  [L=153]
Description: hypothetical protein CKS_0060 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-43  148.1  11.1    2.6e-43  147.9  11.1    1.0  1  DUF2919   Protein of unknown function (DUF2919)


Domain annotation for each model (and alignments):
>> DUF2919  Protein of unknown function (DUF2919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9  11.1   1.4e-47   2.6e-43       2     144 ..       8     146 ..       7     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 1.4e-47
     DUF2919   2 siedyDehgrlkpPlllwlvllflaRawvvfvaagasreqgaaLlalfYPdkssfylgLalgvpalllllligrrkkssewleklwragrplllllllv 100
                 ++edyD++g+l++P+l+wl+ll+++R+w+++v+agasr+qg++LlalfYPd+++f+ gL+lg+pal  lll+g+r++    l+++wr++r +l+++l +
  EHU01632.1   8 PPEDYDDKGQLRLPFLFWLILLLQSRTWWLLVMAGASRQQGNDLLALFYPDRQAFWSGLVLGLPALSGLLLTGYRSR----LPRVWRSWRLVLVVSLGA 102
                 79*************************************************************************77....****************** PP

     DUF2919 101 dlllqlyrlalsheafswltaltlllllwvllyllkskrlrdcf 144
                 +ll+q ++l++++   s l +l +l++l++ll+ll s rlr+cf
  EHU01632.1 103 NLLWQSVQLVQTDLLSSPLPLLFTLFDLLALLWLLISIRLRACF 146
                 *******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1265.48
//
Query:       EHU01633.1  [L=141]
Description: GNAT family acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-20   72.7   0.1    3.6e-20   72.3   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.6e-15   55.7   0.0    6.3e-15   55.2   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.7e-13   50.8   0.2    2.7e-13   50.2   0.2    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.9e-09   37.7   0.1      6e-08   32.8   0.1    2.1  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    8.4e-09   35.3   0.0    1.2e-08   34.8   0.0    1.2  1  FR47             FR47-like protein
      4e-07   30.3   0.5    5.2e-07   29.9   0.5    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
     0.0023   18.6   0.0      0.003   18.2   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.028   14.6   0.0      0.071   13.2   0.0    1.6  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
      0.074   12.5   0.0      0.096   12.1   0.0    1.2  1  Acetyltransf_15  Putative acetyl-transferase
       0.11   12.0   0.0       0.14   11.7   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase
       0.12   12.6   0.0       0.21   11.8   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   2.2e-23   3.6e-20       8     117 .]      18     123 ..       7     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2.2e-23
                     HHHHTH.HHHHHHHHHHHHHHHHSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1   8 lvesff.ppnedaseeefeesfsleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                     ++++    p++d+++++ ++    +++   +lvae +ge++G++++  + +    +++ + laV+p+y+g+G + aL++ le+++  +g+ ki l
      EHU01633.1  18 WERCDLlRPWNDPELDIERKM---HHDadLFLVAEVGGEVVGTVMGGYDGH----RGAAYYLAVHPDYQGRGFANALMNRLEKKLIARGCPKIHL 105
                     444433599********7777...444446777******************....7888889********************************* PP

                     EEETTEHHHHHHHHHTTE CS
  Acetyltransf_1 100 aveedndaairlYeklGF 117
                      v+e nd+ +++Yekl +
      EHU01633.1 106 MVREENDQVVAFYEKLDY 123
                     ***************976 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.9e-18   6.3e-15      22     111 ..      34     128 ..      27     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.9e-18
  Acetyltransf_10  22 lrerieegealllvaeeggkivGvi..el.rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                      +++++++ + l+lvae+gg++vG++  ++    +    + l+V+p+y+g+G ++aL++++e+++  +g  + +l v++ + + v+fYekl +++
       EHU01633.1  34 IERKMHHDADLFLVAEVGGEVVGTVmgGYdG--HrgAAYYLAVHPDYQGRGFANALMNRLEKKLIARGCPKiHLMVREENdQVVAFYEKLDYET 125
                      67889899999*************9544444..4459**************************878887778********9************9 PP

  Acetyltransf_10 109 vge 111
                      v+ 
       EHU01633.1 126 VDV 128
                      975 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.2   1.6e-16   2.7e-13       3      75 ..      43     124 ..      41     125 .. 0.73

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.6e-16
                     EEEEEEEETTEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHH.HTT....SEEEEEEEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld..aeitrlaVdpeyrgkGiGraLle.aae....kgiileqlel....naekaikfYeklGFe 75 
                     + ++Vae +g++vG++    ++  +   +laV+p+y+g+G + aL++ +++    +g+  +  +l    ++++ ++fYekl +e
      EHU01633.1  43 DLFLVAEVGGEVVGTVMGGYDGhrGAAYYLAVHPDYQGRGFANALMNrLEKkliaRGCPKI--HLmvreENDQVVAFYEKLDYE 124
                     5799**********999888765444444*****************954223567887633..2332432237788*****998 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   3.7e-11     6e-08       1     128 []       2     126 ..       2     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.7e-11
                     .EEEE-GGGHHHHHHHHHHHTT----H...HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHH CS
  Acetyltransf_9   1 eirelteedldevlellkyaFqdeesple.eireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskL 94 
                     eir+ ++ed++ev+ l++++   ++   + e++ + +   + + +l+ae +ge+vg+++        +G   + ++ +  av+p+++grg++++L
      EHU01633.1   2 EIRTFRQEDFEEVITLWERCDLLRPWN-DpELDIERKMHHDADLFLVAEVGGEVVGTVM--------GGYDGHRGAAYYLAVHPDYQGRGFANAL 87 
                     69******************7666655.4466555566667777888888******986........78999999999***************** PP

                     HHHHHHHHHHTT--EEEE--SSH.....HHHHTTT-EE. CS
  Acetyltransf_9  95 laraleemreegqplsllfPssi.....piYrrfGyeia 128
                     ++r+ +++ ++g p + l+ +++     ++Y++++ye++
      EHU01633.1  88 MNRLEKKLIARGCPKIHLMVREEndqvvAFYEKLDYETV 126
                     ********************66555556********985 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   7.2e-12   1.2e-08      22      80 ..      67     126 ..      51     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7.2e-12
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S.-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergk.tvllvvvasNtpsirlyeklGfeki 80 
                 g+ + l v+p+ ++rG++  l + l k++++rg  ++ l+v+++N++  ++yekl +e  
  EHU01633.1  67 GAAYYLAVHPDYQGRGFANALMNRLEKKLIARGCpKIHLMVREENDQVVAFYEKLDYETV 126
                 677899*************************9953899*******************976 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.5   3.2e-10   5.2e-07      73     138 ..      45     110 ..       4     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 3.2e-10
  Acetyltransf_6  73 lyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrrfdlgggde 138
                     ++v++++g++v++++g ++g+r  +++ +++p++ + +    l+ +l + ++++G+ +++l+  +e
      EHU01633.1  45 FLVAEVGGEVVGTVMGGYDGHRGAAYYLAVHPDYQGRGFANALMNRLEKKLIARGCPKIHLMVREE 110
                     77999********************************************************98665 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-06     0.003       3     137 ..       2     123 ..       1     124 [. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
  Acetyltransf_3   3 lLrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsv.glrdleeedeeaelgymlapsfwgkGy 96 
                      +r +++eD+e++  l+++ ++ r  p++ ++ + e+++ +         +  +++ + +++v+G+v g   +++ ++ a   + ++p+++g+G+
      EHU01633.1   2 EIRTFRQEDFEEVITLWERCDLLR--PWNDPELDIERKMHH--D-----AD-LFLVAEVGGEVVGTVmGG--YDGHRG-AAYYLAVHPDYQGRGF 83 
                     689999999999998999999887..886666666777762..1.....23.38886655547****433..455544.7888888999****** PP

  Acetyltransf_3  97 ateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     a   ++ l + + ++   +++   + +eN + ++ +ekl +
      EHU01633.1  84 ANALMNRLEKKLIARG-CPKIHLMVREENDQVVAFYEKLDY 123
                     **********997777.9********************976 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.4e-05     0.071      37     137 ..      34     126 ..       3     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.4e-05
  Acetyltransf_4  37 fekflealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvyla.erdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfh 129
                     +e+ +++       +flvae  +++vG+  +g      +d++    +yla + d + +g + +l++ le+ l + +  ++   +  +n++ ++f+
      EHU01633.1  34 IERKMHH----DADLFLVAEvGGEVVGTVMGG------YDGHRGAAYYLAvHPDYQGRGFANALMNRLEKKLIARGCPKIHLMVREENDQVVAFY 118
                     4455554....366899999999****99988......8999999999999999***************************************** PP

  Acetyltransf_4 130 kalGFelv 137
                     ++l +e v
      EHU01633.1 119 EKLDYETV 126
                     *9999876 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.9e-05     0.096      76     101 ..      70      95 ..      63     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.9e-05
  Acetyltransf_15  76 YtlyvsekyrgkGlakklLeeslkel 101
                      Y+l v+++y+g+G+a  l+++  k+l
       EHU01633.1  70 YYLAVHPDYQGRGFANALMNRLEKKL 95 
                      99*****************9976665 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.6e-05      0.14     164     235 ..      50     124 ..      33     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
  GNAT_acetyltran 164 kngeivsgasSysvyekgieieidTkedyrrkgLAtivaaalileclkrglyPsWDaa....neaSvaLaekLGYe 235
                       +ge+v  ++ +   ++g+    + ++dy+++g+A+++ ++l ++ + rg  P+   +    n + va +ekL Ye
       EHU01633.1  50 VGGEVVGTVMGGYDGHRGAAYYLAVHPDYQGRGFANALMNRLEKKLIARGC-PKIHLMvreeNDQVVAFYEKLDYE 124
                      567888888888888999999999******************999999984.555555556666666666666666 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.21      22      49 ..      64      91 ..      46     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  Acetyltransf_CG 22 egvldfthTeVpeelrGkGiAkkLvkaa 49
                     +++ + +   V++ ++G+G+A +L+++ 
       EHU01633.1 64 GHRGAAYYLAVHPDYQGRGFANALMNRL 91
                     5667788999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1193.73
//
Query:       EHU01634.1  [L=49]
Description: hypothetical protein CKS_0062 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 372.13
//
Query:       EHU01635.1  [L=281]
Description: N-acetylmuramoyl-l-alanine amidase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-49  168.4   0.0    2.6e-49  167.7   0.0    1.3  1  Amidase_3  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   1.5e-53   2.6e-49       1     174 [.      55     270 ..      55     271 .. 0.99

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 1.5e-53
   Amidase_3   1 ividpGHGgkdpGavgknglkEkdlnlkvalklaklLeakg.aeVvltrdddksvslkeranianksradlfvsiHadsaanssasGvevfy....... 91 
                 +++dpGHGg d+Gavg++g  Ek ++l++a ++++lL+++  +eV+ltrd+d +++l++r++ia++++a+lf+siHad+++++ asG++vf        
  EHU01635.1  55 VMLDPGHGGIDSGAVGEEGSEEKHIVLDIASNVRSLLQSHPrIEVRLTRDSDHFIPLYQRVEIAHQHGANLFMSIHADGYTSPDASGASVFAlsnrgas 153
                 89************************************************************************************************* PP

   Amidase_3  92 ...................................leknekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpedakl 155
                                                    l ++++ ++s +l k + ++++  ++l+++ +++a  ++vl++++ip+vlvE+ fi+np++++l
  EHU01635.1 154 ssmarylskrendadkvgganveqqdqylqqilfdLVQTDTIRNSLTLGKHVLDQIRPVHHLHSQHTEQAA-FAVLKSPSIPSVLVETSFITNPREEQL 251
                 ****************************************************************9999999.*************************** PP

   Amidase_3 156 lkseeyqeklakaiaegik 174
                 l ++++++k+a aia+gi 
  EHU01635.1 252 LGTTAFRQKIASAIATGII 270
                 *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2158.03
//
Query:       EHU01636.1  [L=304]
Description: coproporphyrinogen III oxidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-134  445.5   0.0   6.3e-134  445.3   0.0    1.0  1  Coprogen_oxidas  Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.3   0.0  3.5e-138  6.3e-134       1     296 []       6     300 ..       6     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 445.3 bits;  conditional E-value: 3.5e-138
  Coprogen_oxidas   1 kveellkelqdeivkaleeldgkakfkedewereeggggisrvledgkvfekagvnvsvveg.klpesavkqmraekkeeleeleffaagvslv 93 
                      +v+++l +lqdei+++l++ dg+a+f+ed+wer+ gggg+srvl++g+vfe+agvn+s+v+g ++p+sa++++     +el++++f+a+gvslv
       EHU01636.1   6 RVKTFLLDLQDEICRKLTAEDGGAQFTEDRWERPGGGGGRSRVLRNGAVFEQAGVNFSHVHGdQMPASATAHR-----PELAGCSFEAMGVSLV 94 
                      5899*****************************99***************************99******999.....99************** PP

  Coprogen_oxidas  94 ihprnPlvPtvhlnyryfeaee..kkkawWFgGgaDLtPsylfeedavhfHktlkeacdkhdkelypkfKkwcDeyFyikhRkeaRGvGGiffd 185
                      ihp+nP+vPt h+n+r+f ae+   +  wWFgGg+D+tP+y feeda h+H+t+ ++c+++++++yp+fKkwcD+yFy+khR+e+RG+GG+ffd
       EHU01636.1  95 IHPNNPYVPTSHANVRFFIAEKpgAEPIWWFGGGFDMTPFYGFEEDALHWHQTAFDICQPFGEDVYPRFKKWCDDYFYLKHRDEQRGIGGLFFD 188
                      ********************99764789****************************************************************** PP

  Coprogen_oxidas 186 dlkes.aeelfafvksvgeaflpaYlpivekrkdtpyteeerewqllrrgryveFnLvyDrGtkfGLqtegrvesiLmslPptarweyelepee 278
                      d+++  +e+ fa++++vg+ fl+aY piv++rk++py+++er++ql+rrgryveFnLv+DrGt fGLqt+gr+esiLmslPp++rwey+++pe+
       EHU01636.1 189 DIHKPgFEQSFALIQAVGRGFLDAYQPIVARRKHMPYGDRERQFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSLPPMVRWEYNYHPEP 282
                      ***777**************************************************************************************** PP

  Coprogen_oxidas 279 gseeaellevlkkpreWv 296
                      +s+ea+l++ +   ++W+
       EHU01636.1 283 DSPEAALYRDFLPVKNWL 300
                      *****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2180.98
//
Query:       EHU01637.1  [L=316]
Description: transaldolase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-100  334.8   0.0   4.6e-100  334.7   0.0    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.7   0.0  2.6e-104  4.6e-100       1     286 [.      13     311 ..      13     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 334.7 bits;  conditional E-value: 2.6e-104
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddte 92 
                 +v+D++d+e+i+++ +    q++TtNPsli+ka +   yk+l+d+ai+++kk+g     ++ +a+dk+a++ + e+l+ +  +grvs+EVdarls+d  
  EHU01637.1  13 VVADSGDIESIRNYHP----QDATTNPSLILKASAlqpYKHLIDDAIDYAKKQGgskeTQIINASDKVAINLGMEILKSI--PGRVSTEVDARLSFDRG 105
                 69**************....************98899******************9999999******************..***************** PP

                 HHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT.............S-HHHH CS
     TAL_FSA  93 atieeArrlialye.....renvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddll.kkleekdklkgkddgval 185
                  ++ +A++l+++ye     r+++lIK+++t+eGikA++eL+k+Gi++n+Tl+Fs++qa+a+aeag+++iSpFvgRi d++ +++   ++  ++d+gv++
  EHU01637.1 106 MCVTKAEKLVRMYEehgidRSRILIKLASTWEGIKAAEELEKNGIQCNLTLLFSFAQARACAEAGVYLISPFVGRIYDWYnSRKPMDPYNVDEDPGVKS 204
                 ********************************************************************************66666669999999***** PP

                 HHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH........................................HHHHHH CS
     TAL_FSA 186 vkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkts.eklee.....eeiek...lleklfrlginedavaeelldegikk 275
                 v++iy+yykk++y+T +m+asfr+ve+v++lagcd++T++p+lle+l+++++   +kle      +   +   l+e++fr+++++d +a+e+l++gi++
  EHU01637.1 205 VRRIYDYYKKHRYDTIIMGASFRKVEQVLALAGCDRLTLSPNLLEELQNSEAPVeRKLEPstecfH---QpspLSEAEFRWEHDQDPMAVEKLADGIRQ 300
                 ****************************************************94355555652444...3455************************** PP

                 HHHHHHHHHH- CS
     TAL_FSA 276 Fakdlekllas 286
                 Fa d++kl++ 
  EHU01637.1 301 FAVDQQKLEDV 311
                 ********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2433.93
//
Query:       EHU01638.1  [L=666]
Description: transketolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.6e-171  567.7   0.1   9.4e-171  567.2   0.1    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    4.1e-48  163.4   0.3    1.1e-47  162.0   0.1    1.8  2  Transket_pyr     Transketolase, pyrimidine binding domain
    1.8e-18   66.6   0.1    4.6e-18   65.3   0.1    1.8  1  Transketolase_C  Transketolase, C-terminal domain
    7.9e-05   22.0   0.0      0.039   13.1   0.0    2.4  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    0.00053   19.0   0.0      0.001   18.1   0.0    1.4  1  E1_dh            Dehydrogenase E1 component
     0.0028   17.5   0.1       0.82    9.4   0.1    2.7  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
  ------ inclusion threshold ------
       0.63   10.0   2.4       0.37   10.7   0.4    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.2   0.1  3.7e-174  9.4e-171       2     334 .]       4     334 ..       3     334 .. 0.99

  Alignments for each domain:
  == domain 1  score: 567.2 bits;  conditional E-value: 3.7e-174
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      +++++naiR+L++Dav+kaksGhPGap+g+adiaevl++++lkhnP++p+w+dRDRf+LsnGh+s+llYsllhLtGydl++e+lk+frql+s+t
       EHU01638.1   4 RRELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPTNPAWLDRDRFILSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSQT 97 
                      57899***************************************************************************************** PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                      pGhPe+g+t+gve+ttGPLGqG+anavgla+ae+tlaa++n+p++divdh+tyv++gDgclmeG+s+e++slagtl+LgkLi +yD+n isidG
       EHU01638.1  98 PGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPQHDIVDHFTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDG 191
                      ********************************************************************************************** PP

                      EGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-TS CS
  Transketolase_N 190 eteisftedvakrfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeksf 283
                      ete +ft+d++krfeay+Whv+ + dg+d+ea+kaai+ea++++dkPsli +rtviG+gsp+kag+e++hGa+Lge+eva ++k+lG++ +  f
       EHU01638.1 192 ETEGWFTDDTHKRFEAYNWHVVGEIDGHDAEAVKAAIKEAQSVTDKPSLIICRTVIGFGSPNKAGKEEAHGAALGEEEVALTRKQLGWN-YPAF 284
                      *****************************************************************************************.**** PP

                      ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 284 evpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      e+p+e+y+++++k+a ga++e++W+ kfaay++++pe+aae +rr++ge+P
       EHU01638.1 285 EIPQEIYQQWDAKEA-GAAREKAWNDKFAAYQQAYPELAAEYTRRINGEMP 334
                      ***************.*********************************99 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.1   4.2e-51   1.1e-47       2     176 ..     354     524 ..     353     526 .. 0.97
   2 ?   -2.0   0.0      0.97   2.5e+03      62     101 ..     627     661 ..     625     664 .. 0.82

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 4.2e-51
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT..TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg..egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqai 96 
                   kia rka+++ l++++k  pe+++++aD+a ++++ ++g++  ++  +g++i++g++E++++++ +G+a +g+ +v++ a+F++F++    ya++a 
    EHU01638.1 354 KIASRKASQNSLEAYGKMLPEFLGGSADLAPSNLTIWSGSKSIKEdpAGNYIHYGVREFGMTAIGNGIAHHGG-FVPYTATFLMFVE----YARNAA 445
                   8999***********************************99988888*************************6.*************....****** PP

                   HCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  97 rsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   r ++a++k++ + v+t+++ig+gedGp+hq++e++a+lr +p+++v+rP+d++et+ ++++ai+r+  +P++l+l++++l 
    EHU01638.1 446 R-MAALMKARQIlVYTHDSIGLGEDGPTHQPVEQIASLRVTPNMSVWRPCDQVETAVAWQAAIERH-HGPTALILSRQNLA 524
                   *.**********9***************************************************87.69**********97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.97
                   HHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHHH CS
  Transket_pyr  62 gfavGaalagpllviveaqFgdFangAqiyadqairsgea 101
                   g+ vG+ + g    ++e  F+ F       +++ +++ ea
    EHU01638.1 627 GAIVGMTTFG-ESAPAEKLFAEFGF----TIENIVSHAEA 661
                   6789******.6***********98....77777777666 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.1   1.8e-21   4.6e-18       1     124 []     540     655 ..     540     655 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 1.8e-21
                      TEEEEEET.TSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C   1 gkaeilre.gkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgld 93 
                      g++  ++e  +dv+l+a+Gs+ve  l Aa +L   g +++Vv+l++++ +D ++ +     +++ v+      r+++++ +a+++++  + gld
       EHU01638.1 540 GYVLKDCEgTPDVILIATGSEVEITLGAATKLTTGGHKVRVVSLPSTDLFDAQDAA-----YRESVLPSAVKARVAVEAGIADYWYK--YVGLD 626
                      78889999789*********************************************.....**************************..***** PP

                      SEEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  94 apvkrvggpdviepgsaeelekafgldaeki 124
                      ++++ ++ +  +e+++ae+l ++fg++ e+i
       EHU01638.1 627 GAIVGMTTF--GESAPAEKLFAEFGFTIENI 655
                      ******999..99**************9987 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0015         4      19     176 ..       5     190 ..       1     198 [. 0.72
   2 !   13.1   0.0   1.5e-05     0.039     232     271 ..     203     243 ..     192     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
  DXP_synthase_N  19 eelaeelrefliesvsk.tggHlasnLgvveLtlalhyvf...dtp.......kDklvwDvgHqa...YvhKiltgRkdkfktlrqkgGls.... 95 
                     +ela+ +r+  +++v+k ++gH ++ +g+ +++  l++ f   + p       +D+++   gH +   Y    ltg    +++l++   l+    
      EHU01638.1   5 RELANAIRALSMDAVQKaKSGHPGAPMGMADIAEVLWRDFlkhN-PtnpawldRDRFILSNGHGSmllYSLLHLTGYDLPIEELKNFRQLHsqtp 98 
                     68999999999999976379999999999999999999884321.12223333799999999987555777778999877777776666652222 PP

  DXP_synthase_N  96 gfpkrsEseyDafeagHsstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkllvilNdNemsis 176
                     g+p++   +    ++g  +  ++ a+Gla+a+++             ++ +   +GDg l  G+++e    +g+l   kl+  +  N  si+
      EHU01638.1  99 GHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAqfnrpqhdivDHFTYVFMGDGCLMEGISHEVCSLAGTLGlGKLIGFYDHNGISID 190
                     55555556666788899999999999*9999665554355555555556777789***********99999988852566667777777775 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.5e-05
  DXP_synthase_N 232 tlfeelgfkYlGpidGhdleelikvleevkkl.kgpvllhv 271
                     + fe+ + + +G idGhd e++  +++e++++ ++p l+ +
      EHU01638.1 203 KRFEAYNWHVVGEIDGHDAEAVKAAIKEAQSVtDKPSLIIC 243
                     579***************************97467888765 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     4e-07     0.001     100     220 ..     113     241 ..      95     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4e-07
                 -SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..TTTTS CS
       E1_dh 100 ngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrargvgi 187
                  g++g     + G+a+a +           +  ++ + +++GDg   +G+ +e   la + +l   i +   N++ i  e+ ++  +++  +r  +++ 
  EHU01638.1 113 TGPLGQGLANAVGLAIAERtlaaqfnrpqHDIVDHFTYVFMGDGCLMEGISHEVCSLAGTLGLGKlIGFYDHNGISIDGET-EGWFTDDTHKRFEAYNW 210
                 55555554444467776667777787776666788999*************************77699*****99998765.56778888899999999 PP

                 -EE.EEETTSHHHHHHHHHHHHHHHHTTT--EEE CS
       E1_dh 188 pgl.rVdgnDplavyeAvkfAaeraregkgplli 220
                   + ++dg D +av++A k+A+  +++   p+li
  EHU01638.1 211 HVVgEIDGHDAEAVKAAIKEAQSVTDK---PSLI 241
                 98868****************976543...6665 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00032      0.82      24      62 ..     110     162 ..      93     170 .. 0.76
   2 !    5.1   0.0    0.0072        18     112     152 ..     200     242 ..     183     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00032
                   ETTTS-TTTHHHHHHHHHHH............ST..TSEEEEEEEHHHHHHTG CS
  TPP_enzyme_C  24 sgglgtmGyglpaAiGakla............kp..drevvaivGDGgflmil 62 
                   ++++g +G gl+ A+G+++a            +   d+  ++++GDG+++  +
    EHU01638.1 110 ETTTGPLGQGLANAVGLAIAertlaaqfnrpqHDivDHFTYVFMGDGCLMEGI 162
                   6789***************4445556777443113458999*******99764 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0072
                   -HHHHHHHTTSEEE.EESSH.HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C 112 dfaklaealGakga.rvekadveeleealkeal.ekkgpalie 152
                   d  k  ea+  +++  ++ +d e +++a+kea   +++p+li 
    EHU01638.1 200 DTHKRFEAYNWHVVgEIDGHDAEAVKAAIKEAQsVTDKPSLII 242
                   56677899999977799***************98889999997 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00015      0.37      19      73 ..     555     626 ..     497     630 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 EECEEEEEEEGCGEEECTTTSEEEEEEECTSB.................EEEEEEEEEEEETTEEEESSSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  19 vrvgqpvevrfdAfpqtktgkftgvVvgispd.................rvpvrvvvekaqgpyyplriglk 73 
                 +++g +ve+++ A ++ +tg+  + Vv+   +                 +v++rv ve    +y+   +gl+
  EHU01638.1 555 IATGSEVEITLGAATKLTTGGHKVRVVSLPSTdlfdaqdaayresvlpsAVKARVAVEAGIADYWYKYVGLD 626
                 689**************************9999*******************************98777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4668.64
//
Query:       EHU01639.1  [L=37]
Description: hypothetical protein CKS_0072 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 297.56
//
Query:       EHU01640.1  [L=466]
Description: hypothetical protein CKS_0073 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.1e-112  375.8  25.8   2.7e-112  375.4  25.8    1.0  1  2HCT            2-hydroxycarboxylate transporter family
      4e-15   56.6   0.4    8.6e-15   55.5   0.4    1.5  1  HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-compon


Domain annotation for each model (and alignments):
>> 2HCT  2-hydroxycarboxylate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.4  25.8    3e-116  2.7e-112      81     414 ..     127     457 ..     117     459 .. 0.98

  Alignments for each domain:
  == domain 1  score: 375.4 bits;  conditional E-value: 3e-116
        2HCT  81 vvkavttfmkesgfldlyiaaLivgSiLgmdrklLikafvryipliliglvlalllgvlvGlllGlsakeallyivlPimaGGvgaGavpLseiyssvl 179
                 + +a+++ +k++++l+lyi+++ivgSi++m+r++Li++f+r++ ++l+g ++++++g+ vGl+lGl++ +++++i+lPimaGGvg+Ga+pLs++y+++l
  EHU01640.1 127 MEDAAKAAYKSTNILYLYICCIIVGSIMSMNRTVLIQGFLRIFFPMLCGEIVGMIVGMGVGLALGLEPFQIFFFIILPIMAGGVGEGAIPLSIGYAALL 225
                 567788999****************************************************************************************** PP

        2HCT 180 gkdaeellsqlipavllgnivaivvagllkklgkkkpsltGnGkllkkkeeeekakekkekekkidvkklgaglllalslyllgvllekligvkipalv 278
                 ++d+  +l++++p+v+lg+++ai+++g+l++lgk++p+ltG+G+l+++ ++ e ++ ++  + k+dv+++++g+lla+ ly++g+l +kl+g  + a+v
  EHU01640.1 226 HMDQGVALGRILPMVMLGGVTAIIISGCLNQLGKRYPHLTGEGQLMPNVTNVEPEPLQSVFSGKVDVTAIASGALLAVLLYMVGMLGQKLTG--LRAPV 322
                 *************************************************999989999999*****************************87..***** PP

        2HCT 279 lmiilvvivkllnlipeeleegakqlykfisknltlallvgiGvaltdlkeliaaltvqyviiilvtVvgavlgaalvgkllgfypieaaitagLcman 377
                  m++l+v+vkl+n ++ ++  g++ +y+f+ +++t+++l+++Gva+t+++ l++a+t++++++i++tV ++v+++++vgk +g++pi+ ai+++ c+++
  EHU01640.1 323 GMLFLAVLVKLVNGVSPRILAGSQVVYRFFRTAVTYPVLFAVGVAITPWHVLVTAFTLTNLLVIISTVSALVATGFFVGKKIGMHPIDVAIVSC-CQSG 420
                 **********************************************************************************************.**** PP

        2HCT 378 mGGtGdvavLsAanrmeLmpFAqistRlGGAlvvila 414
                 +GGtGdva+L+A+nrm LmpFAqi+tR+GGA+ v l+
  EHU01640.1 421 QGGTGDVAILTAGNRMGLMPFAQIATRIGGAINVSLS 457
                 *********************************9876 PP

>> HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.4   9.6e-19   8.6e-15       3      81 .]      14     109 ..      13     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 9.6e-19
  HK97-gp10_like   3 lakkleklserevekaikkalkkaAkevldkakkrtpsvdtggdLrdsitv...........qg........kvkkkggeyrvevgnnaeyArlv 78 
                     l + l+ ls++e +k++++a+++aA +v+d+akkr+p ++t g+L+++i+v           +g        + +k  g+++ + +nna y+r++
      EHU01640.1  14 LSDDLNVLSKAENRKVLRDATRAAATVVRDEAKKRAP-RKT-GRLARNIVVatlrqrdggiaSGvhvrgtnpETGKSEGNMKTGDRNNAYYWRFL 106
                     6788999***99*************************.999.*********888866655551144445556778888888888888888***** PP

  HK97-gp10_like  79 EfG 81 
                     E G
      EHU01640.1 107 ELG 109
                     *88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3750.96
//
Query:       EHU01641.1  [L=113]
Description: phage head-tail adapter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-18   67.1   0.1    1.7e-18   66.9   0.1    1.0  1  Phage_H_T_join  Phage head-tail joining protein


Domain annotation for each model (and alignments):
>> Phage_H_T_join  Phage head-tail joining protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.1   9.2e-23   1.7e-18       1      96 []       7     107 ..       7     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 9.2e-23
  Phage_H_T_join   1 rhritiqkkvketqdeeggpvetwvdlat.vwAeveslsgreaiaagaeqaettvritiRyrkditadmriv.....fdgriYdIksidddderr 89 
                     +hr+t+q  v +++ ++g+   +w+++at v Aev+  sgre +a+gae ae+ +r+++Ryr+dita  r+v     ++g + d+ +i+  d+r+
      EHU01641.1   7 KHRVTVQNAV-QVKLPSGQRKDEWHAVATgVPAEVKGISGREIVASGAEKAEAAIRVWMRYRNDITAATRLVcetgpYRGYVLDVIGIPIADNRM 100
                     59*****555.**********99***********************************************997777777********999999** PP

  Phage_H_T_join  90 ryleltc 96 
                       le++c
      EHU01641.1 101 TRLEILC 107
                     *****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 852.25
//
Query:       EHU01642.1  [L=368]
Description: phage major capsid protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-53  180.7   0.2    5.1e-53  180.2   0.2    1.2  1  Phage_capsid  Phage capsid family
     0.0053   16.1   1.7     0.0087   15.4   1.7    1.3  1  YPEB          YpeB sporulation


Domain annotation for each model (and alignments):
>> Phage_capsid  Phage capsid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.2   5.7e-57   5.1e-53       2     280 .]      96     364 ..      95     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 5.7e-57
  Phage_capsid   2 gvlvpeelsteiiellrerspirqlatvtr..tsasgtvkilvqtgeaeaawvgeteaipetdsp.tfgqitlsvkklaalvpvsnelLddsavdle 95 
                   g l+++ + ++i++   +r +ir+l++ +r  +++ ++v+  ++t+  +aa v+e++   +++s+ tf++ t++vk++a++v++s++++dd+ + l+
    EHU01642.1  96 GSLIQPMQVPGIVTPGLRRLVIRDLLAQGRisSNSLEYVREEKFTN--SAASVKEKAM--KPESDiTFSKQTANVKTIAHWVQASRQVMDDAPM-LQ 187
                   66899999**********************5555555555555555..*******555..555555****************************.** PP

  Phage_capsid  96 ayiadelaeafarkedeaflnGdGdgngqpkGilastgavatgtaaavtatntaddlidliyslkaayranasfvmnpstlaalrklkdadGnylwq 192
                   +y++++l +++a+ e+ ++lnGdG+ + +++Gi   t a+a++t+ +  ++  ad + ++iy++ +    ++++++np+++  +++lkd++G+y+++
    EHU01642.1 188 SYVNNRLMYGLALVEEGQLLNGDGQED-NLTGIN--TVATAYDTTLNARGDTRADMIAHAIYQVTESEFSASGIILNPRDWHNIALLKDGEGRYIFG 281
                   **********************66665.******..8999999999988888899999****55555555444***********************7 PP

  Phage_capsid 193 pglqagqp.tLlGrpvveseampdagaksageilfGDf..sayiivdreg.veikvlrdpysafekdqvafratervdgavvdpeAfkklkv 280
                    g qa ++   +G+pvv + a        +g++ +G f  + ++++++++ +ei++++   ++f k++ +++++er+++a ++p A++k+++
    EHU01642.1 282 -GPQAFTSnIMWGLPVVPTRAQ------VQGTFTVGGFdlASQVWDRMDAtIEISREDR--DNFVKNMLTILCEERLALAHYRPTAIIKGTF 364
                   .335556669************......4677999977758888888888899988888..***************************9986 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.7   9.7e-07    0.0087     111     169 ..       3      62 ..       1      87 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.7e-07
        YPEB 111 pLteeeyktLeeLyeqakelekeLrkvqekvaegglrwgelekalas.eqekadntiidg 169
                 +L e++ +++e+  + +k+l+++L kvqe++ + g r+ +le++la+ +q+++++++ ++
  EHU01642.1   3 QLFEAQKSEIESTGKVSKQLQDDLGKVQEELSKSGARLFDLEQKLATgAQSPSQEKSFSE 62 
                 6789999**************************************887777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2864.97
//
Query:       EHU01643.1  [L=229]
Description: head maturation protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-30  104.2   0.0    1.1e-29  103.6   0.0    1.2  1  Peptidase_S78  Caudovirus prohead serine protease


Domain annotation for each model (and alignments):
>> Peptidase_S78  Caudovirus prohead serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0   6.4e-34   1.1e-29       4     154 ..      18     162 ..      13     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 6.4e-34
  Peptidase_S78   4 evrsseegee.tisGYasvfnevsellggfkeviapgafeetlke..kdvralfnHdt.skvlGrtksgtLelseDekGlrfelkl.pdttvardl 94 
                    e++ s +g++ +++GYasvfn++++     ++ i pgaf+++l++  ++v + fnH+t + ++G+++    +l+eD+kGl+++ +l p ++ a dl
     EHU01643.1  18 EIKFSGDGKQgIFEGYASVFNNTDS----DGDIILPGAFKNALANqsRKVAMFFNHKTwDLPVGKWD----SLAEDDKGLYVRGQLtPGHSGATDL 105
                    555555666678*************....9*************995445*******972568****8....89*********************** PP

  Peptidase_S78  95 yellkrgdldglSfgFrvvedeweereekvvvrtikkve.LlEvSvVtvPAyddtsvevsa 154
                     + ++ g +dg+S+gF+v++d+    ++    r++k++  L E+Sv t+PA++ + v+ + 
     EHU01643.1 106 KAAMQHGTVDGMSVGFSVNKDDYSLGTS---GRIFKNIAaLREISVCTFPANELAGVS-AM 162
                    ********************99999999...9******99*************99888.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1692.32
//
Query:       EHU01644.1  [L=357]
Description: phage portal protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-82  275.8   0.0    4.8e-82  275.7   0.0    1.0  1  Phage_portal  Phage portal protein


Domain annotation for each model (and alignments):
>> Phage_portal  Phage portal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.7   0.0   2.7e-86   4.8e-82       8     313 ..       2     323 ..       1     324 [. 0.95

  Alignments for each domain:
  == domain 1  score: 275.7 bits;  conditional E-value: 2.7e-86
  Phage_portal   8 rliaeaiAklplklyr.....ggreevedhplyrlLnvrPNpymtayeflealvanlllygnayalivrdgr.rvvelyplppdrvt.....grley 93 
                   +li++  A lpl +++     ++ +  +d+pl+rlL++ PN+ymta+ef+e+++++l++ygnayali+r+g+  +v+l pl++++++     ++l+y
    EHU01644.1   2 SLISTLTACLPLDVFEtdrndNRSKVGMDNPLARLLRYAPNQYMTAQEFRESMTMQLCFYGNAYALIDRNGAgDPVSLLPLQSASMDprmvgKSLVY 98 
                   69******************87777789******************************************889************************ PP

  Phage_portal  94 dytddggg.vlpaddvlhirglpld.lkGlspleaareaielalaaeeyaakffkngarpsgilkikapgklseeqreklkeefeeaysgasnagkv 188
                   +y++dg+   ++ +++lh++g++++ l Glsp++ a ++ ++a a+e+ ++ ff+nga+   il   ++  l++eqr++l+ +f+e  +g  + ++ 
    EHU01644.1  99 RYQKDGSYaDFSHSEILHLKGFGFNgLVGLSPIAFACKSAGVAVAMEDNQRDFFANGAKSPQIL--YSDRVLTKEQRDQLEGNFREIAGGPVE-KRL 192
                   ****9887866**********99966**************************************..55555**************99999864.69* PP

  Phage_portal 189 avleggldykplslspkdaqflesrkfaaeeIarafgvpphllgdlgksty..snieeanlafyentlepllkrieqelnrkLl....kkglylefd 279
                    +le+ l+ +p++++p+da++++srkf+++e ar+fgvpphl+gd +kst+  ++ie++nl f+++tl+p++ r+e+++ r+L+      ++ +e++
    EHU01644.1 193 WILESNLKNSPIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSwgTGIEQQNLGFLQYTLQPYISRWENAIQRWLIrpdqVGRYHAEHN 289
                   ***********************************************99999************************************667****** PP

  Phage_portal 280 ldgllrgdtktraeayaklvqagiltpNEvRell 313
                   ldgllrgd+++ra++++ + +ag+ t+NE+R+  
    EHU01644.1 290 LDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTD 323
                   *******************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2632.02
//
Query:       EHU01645.1  [L=507]
Description: putative phage terminase, large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-46  159.4   0.0    1.3e-46  159.1   0.0    1.0  1  Terminase_1  Phage Terminase


Domain annotation for each model (and alignments):
>> Terminase_1  Phage Terminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0   7.3e-51   1.3e-46      19     464 ..      45     486 ..      31     489 .. 0.84

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 7.3e-51
  Terminase_1  19 rrfdeayvsvgrkngKsllvavialiellldpk..ansqifvaattkdqAekilkkvkrqvklskekikvkdekilksrkkeieislvdsvikplssn 114
                     d+ay s++rkngK+ l a + l   l++p+   nsqi+  a   +qA+ ++  + ++++ s+e+ k++  +i+ s k+ i +++ +  +k+ls +
   EHU01645.1  45 AGTDKAYLSIARKNGKTGLIAAVLLA-HLVGPEsvQNSQIVSGAMSLEQAGIVFSLAVKMINFSPELQKII--HIIPSGKRLIGKPM-NVEYKALSAE 138
                  55689************999987665.5678763369*******************************888..688999*******9.8889****** PP

  Terminase_1 115 eDavDGkdpslvilDElaafk..ddelletikeglikrknpltllittagddrnsaldeeleyikevlrekvdddayfvfvaeldadeevkDeakwik 210
                  + +  G  p l+ilDE+++++  + + +  i+++  ++k pl + i+t   + + +l   l+ +k+    k+       +v++  +d ++  +  w  
   EHU01645.1 139 GKTTHGLSPVLAILDEVGQVTgpQSDFIDAIVTAQGAHKSPLLIAISTQAANDGDLLSIWLDDAKN---SKDPHIVS--HVYAAAKDADISSPETWRS 231
                  ******************9963367899********************999998888888877777...44444444..5666666678999****** PP

  Terminase_1 211 anPaLgvkkslekiqkdvkkaiadevsmakilikrfNLwtededsllskeswdqvl...vpprdlsGrdvyiGvDlSrkdDvtavvvafpedgkvylk 305
                  anPa+gv +sl+++++ + +a   +   + +   ++N     +  ++s++ w+ ++   + p ++ G + y G DlS+++D+ta+vv+ ++ ++ +l 
   EHU01645.1 232 ANPAMGVFRSLKDMERLAEQAGRMPSFENTFRNLNLNQRISTDSPFVSRSVWEACIdesIHPGMIVG-ECYAGLDLSERNDLTALVVVGQDAERNWLV 328
                  **************99888776666555555555566556888899********9855467899999.5899*************9999888888776 PP

  Terminase_1 306 a.ysflp.esakekikkldkekieyeeaiergedeasdagmidekqvvdiivfiaktlavqavaYDPwnaksfidklektaldiplvevrqsfaklSn 401
                    y   p ++  +  +k+d+    y  +  +    +  +  ++++ vv  +  i   +++ a+a+D w +  f  +l++  l +p+v+ +q+++ ++ 
   EHU01645.1 329 FpYFWTPgKTIID-RSKRDR--APYDVWAREDRMFTTPGASVEYDFVVVKLPEILADFDMTAIAFDRWRIEIFKKELDRIGLTLPMVQFGQGYKDMAP 423
                  4044444333333.344455..5677776555555556777888888888899*****************************99************** PP

  Terminase_1 402 slkeveklvaeerirhddnklLavsvnNaelkeddaenvkinKKrstdkiDaavalitavtea 464
                  +++ +e  + +++irh + +++ +   Na  ++d+a+n ki K ++t+++D +val +a++ a
   EHU01645.1 424 AIDTLEGALLNGKIRHANHPVMNMCAANATVIRDAAGNRKIDKSKKTGRMDGMVALAMALGAA 486
                  ***********************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3675.56
//
Query:       EHU01646.1  [L=99]
Description: terminase small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   15.2   2.8      0.032   14.9   2.8    1.1  1  AATF-Che1        Apoptosis antagonizing transcription factor
      0.059   12.2   2.1      0.064   12.1   2.1    1.0  1  ALMT             Aluminium activated malate transporter
      0.087   12.3   1.3      0.097   12.2   1.3    1.2  1  DUF1129          Protein of unknown function (DUF1129)
        0.1   12.9   2.8       0.56   10.5   2.8    2.0  1  DWNN             DWNN domain
        1.2    8.4   5.4        1.3    8.3   5.4    1.1  1  CorA             CorA-like Mg2+ transporter protein
        1.8    8.3   7.0        2.1    8.1   7.0    1.0  1  Selenoprotein_S  Selenoprotein S (SelS)
        2.9    8.2  11.0       0.93    9.8   3.0    2.3  2  TPX2             Targeting protein for Xklp2 (TPX2)
        3.3    7.0   7.3          4    6.7   7.3    1.1  1  DUF4407          Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   2.8   1.4e-05     0.032      46     117 ..      19      84 ..       3      95 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
   AATF-Che1  46 es.....seefeealeeaekalkklleslleLreelleqneikklaeskeeeekkkskrkrkkkkkeetsleelwke 117
                 ++     +e +e+ +++++k++ +l +++l+ r +l + ++ ++  es +++++++++r ++k+           ke
  EHU01646.1  19 KEerirgEERNEALIKDLRKQIVELQRTILAQRRDL-QIHSHATNGESRDQQKRNQNERDARKTT----------KE 84 
                 323333366667777777777777777777777777.2222111112222222222222222222..........22 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.1   2.9e-05     0.064     308     382 ..      11      86 ..       2      96 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
        ALMT 308 kvlrelaesvkkmkklskveellkevkvaaeeLqskl.dskskLlvnsekweaakkkekaeeveekkeeekesesk 382
                  vlr+   + ++ + +++ e l+k++++ + eLq ++  ++  L+++s+  + +++ +++ +++e+ ++++++e++
  EHU01646.1  11 TVLRKDLRKEERIRGEERNEALIKDLRKQIVELQRTIlAQRRDLQIHSHATNGESRDQQKRNQNERDARKTTKEHE 86 
                 455554455555555666799***************9889999*****9966555555444444443333333332 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.3   4.3e-05     0.097       6      44 ..       6      46 ..       3      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
     DUF1129  6 NqeyifrltkqL.kkkglsdeekeei.leevlpelleaQkk 44
                Nq yi  l+k L k++ +  ee++e+ +++++++++e Q++
  EHU01646.1  6 NQLYITVLRKDLrKEERIRGEERNEAlIKDLRKQIVELQRT 46
                99**********87888877777665168899*******97 PP

>> DWNN  DWNN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.8   0.00025      0.56      20      59 ..      30      69 ..      14      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
        DWNN 20 sisvfeLKreIiekkklgkgtdfdLqiynaqtkeeyddds 59
                +  +++L+++I+e ++   ++++dLqi  ++t+ e  d +
  EHU01646.1 30 EALIKDLRKQIVELQRTILAQRRDLQIHSHATNGESRDQQ 69
                56689***********9999********888887776655 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.4   0.00056       1.3     138     196 ..      20      77 ..       4      93 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00056
        CorA 138 edeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkey..lrd 196
                 e++++ ++++e l  + +lr+++v+l+r ++++r+ l +++++a +++  d++k++   rd
  EHU01646.1  20 EERIRGEERNEAL--IKDLRKQIVELQRTILAQRRDL-QIHSHATNGESRDQQKRNqnERD 77 
                 5566666666665..6689******************.99997777777777766533444 PP

>> Selenoprotein_S  Selenoprotein S (SelS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.0   0.00093       2.1      47     118 ..      10      80 ..       3      90 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00093
  Selenoprotein_S  47 lllliqklrkrlralrqresdksaaaldpdvvvkrqealeaaRlrmqeeldakaekfkekkkqleeekRrqk 118
                      + +l + lrk+ r +r +e +++ ++   +++v+ q  + a R+ +q +  a   + ++++k+ ++e+  +k
       EHU01646.1  10 ITVLRKDLRKEER-IRGEERNEALIKDLRKQIVELQRTILAQRRDLQIHSHATNGESRDQQKRNQNERDARK 80 
                      3444445555444.555555556655557899*********************9999999998888875444 PP

>> TPX2  Targeting protein for Xklp2 (TPX2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.0   0.00041      0.93      24      51 ..      14      41 ..      12      42 .. 0.91
   2 ?    3.3   1.1     0.044        98      24      39 ..      67      82 ..      48      89 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00041
        TPX2 24 keaekeereakkkeeeeeeikqLRkelv 51
                ++ +++e++ + +e+ e+ ik LRk+ v
  EHU01646.1 14 RKDLRKEERIRGEERNEALIKDLRKQIV 41
                577899*******************987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.044
        TPX2 24 keaekeereakkkeee 39
                 +++++++e+  +  +
  EHU01646.1 67 DQQKRNQNERDARKTT 82
                3344444443333222 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.3    0.0018         4     172     241 ..      20      90 ..       2      94 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
     DUF4407 172 gtgttgvaGkgpaakekkaqldaaqaelaelkakld..atarlaalraelaeleaerakeraasqaaaaadd 241
                  +++ g +++++  k  ++q+ ++q+++ + +++l+  + a+  + r+++++ ++er++++++++  +++dd
  EHU01646.1  20 EERIRGEERNEALIKDLRKQIVELQRTILAQRRDLQihSHATNGESRDQQKRNQNERDARKTTKEH-EDDDD 90 
                 334445666667777777777777777766666666765555555555555545555554444444.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2127  (0.118635); expected 358.6 (0.02)
Passed bias filter:                      791  (0.0441185); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 774.83
//
Query:       EHU01647.1  [L=64]
Description: hypothetical protein CKS_0080 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 555.12
//
Query:       EHU01648.1  [L=86]
Description: hypothetical protein CKS_0081 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-05   24.7   1.9    0.00088   19.4   1.9    2.2  1  HNH       HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.9   4.9e-08   0.00088       3      43 ..       1      57 [.       1      61 [. 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.9e-08
         HNH  3 yCgrkfhksealevdHiipis................qggaddieNlqllCksCHnk 43
                +C +++++s+a+ vdHi+p++                q+   d  N+q+lCk+ H++
  EHU01648.1  1 MCEQQGRVSPASVVDHIEPHKlkdaiksgnrdaiakaQKLFWDTANWQPLCKQHHDS 57
                7********************887776555443332223333489999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 826.90
//
Query:       EHU01649.1  [L=176]
Description: hypothetical protein CKS_0082 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.13   12.1   0.0    1.2  1  Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthe


Domain annotation for each model (and alignments):
>> Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.2e-06      0.13      83     112 ..      33      61 ..      22      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.2e-06
  Glyco_transf_25  83 elnleyiiIlEDDvilseefkealedllke 112
                      +++   ++IlEDD++l + f e++++ l+ 
       EHU01649.1  33 QQD-CRVVILEDDALLVDGFTEKVTAWLDR 61 
                      455.789***************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1470.74
//
Query:       EHU01650.1  [L=485]
Description: hypothetical protein CKS_0083 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0053   16.7   0.0       0.33   10.8   0.0    2.7  3  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.065   13.0   0.0       0.16   11.7   0.0    1.6  1  Glycos_transf_2  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   3.7e-05      0.33       4      45 ..      20      61 ..      17     108 .. 0.79
   2 ?    2.8   0.0      0.01        91     161     205 ..     155     201 ..     119     234 .. 0.83
   3 ?   -2.0   0.0      0.29   2.6e+03      23      51 ..     332     359 ..     329     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.7e-05
  Glyco_tranf_2_3  4 lavlVptfneedvlgevlesllaqey.pr.vevvvvvdesdaet 45
                     + ++++t n++dvl + l+++++  y p+   vvv++d+s+  +
       EHU01650.1 20 IGIAITTHNRHDVLSRALDHHIR--YlPAgALVVVIDDGSTLPV 61
                     6799*******************..5466599999999988664 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.01
  Glyco_tranf_2_3 161 nGsgslirrevlkelegldp..lflltdDyelglrlrragfrtayvp 205
                      +G ++ + r+v +  +g+dp  +  + +  +l+lr+ +ag  +  ++
       EHU01650.1 155 RGVMLYYHRSVIEKVGGFDPiyQRGMYEHSDLALRIHNAGLTSWAFA 201
                      5888999***************************9999998765555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.29
  Glyco_tranf_2_3  23 sllaqeyprvevvvvvdesdaetlevaee 51 
                      ++l+ ++p++++v ++d+ d e l++ ++
       EHU01650.1 332 QHLR-DHPEYHFVWCTDGTDVEMLQEPWQ 359
                      5666.4999********999998776444 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05      0.16       2      75 ..      22      86 ..      22     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.8e-05
                     EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHH CS
  Glycos_transf_2  2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnagl 75
                     + i+t+N+ + l ++l+  ++   +    ++v+DDgS   t  +   +     +v++irr+  +G  ++ na l
       EHU01650.1 22 IAITTHNRHDVLSRALDHHIRY-LPAGALVVVIDDGS---TLPVTVPA-----GVKLIRRDVSRGIVSSKNASL 86
                     679******************9.9999**********...66666666.....688888888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4072.24
//
Query:       EHU01651.1  [L=142]
Description: hypothetical protein CKS_0084 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.087   12.7   0.0        0.2   11.5   0.0    1.6  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
       0.13   11.7   0.0       0.17   11.3   0.0    1.1  1  DnaJ-X        X-domain of DnaJ-containing


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05       0.2      47      96 ..      54     103 ..      15     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
  Complex1_51K  47 llmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaeaka 96 
                    + +++p  i +G+  + eal+ +++ +gv++ + +a +al++  a++++
    EHU01651.1  54 FIAERNPFTIKNGVVFISEALNTRQMCVGVKKAQDKADKALDELFANEDK 103
                   57788999999*******************************99988765 PP

>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.9e-05      0.17      89     167 ..      62     133 ..      56     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.9e-05
      DnaJ-X  89 vvkdtfktvssaldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvL 167
                 ++k+ + ++s al++ ++   ++k+q k        ++  +e  a++ k  ++ +L+ + +    eI++++rev  k L
  EHU01651.1  62 TIKNGVVFISEALNTRQMCVGVKKAQDKA-------DKALDELFANEDKPFINDLLEGLSNEFSEEISGVVREVIRKEL 133
                 6899999**************98888888.......9*************************************98855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1180.44
//
Query:       EHU01652.1  [L=150]
Description: hypothetical protein CKS_0085 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.85    9.4   2.3         12    5.7   0.1    2.4  3  KdpC      K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1   0.00068        12     107     134 ..       4      31 ..       1      37 [. 0.82
   2 ?    3.6   0.1     0.003        54       5      34 ..      43      72 ..      39      84 .. 0.80
   3 ?   -2.8   0.0      0.26   4.7e+03      13      29 ..     108     124 ..     107     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00068
                 ..-SB-HHHHS-BSSS---EE-HHHHHH CS
        KdpC 107 kkeevPadlvtaSgSGLDPhIspeaAel 134
                 +++++ adl+ +   G+D  +s  +A++
  EHU01652.1   4 QANKILADLLQKASNGIDAAVSFSQAQI 31 
                 445899****************998864 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.003
                HHHHHHHHHHHHTHHHHHHHHHHHHH-HHH CS
        KdpC  5 lrlllvltvllgliYplavtgiaqllfpeq 34
                +++ l++tv+ +l  pl+v+ + + l ++q
  EHU01652.1 43 FTFSLITTVVAALTIPLLVWFLRSQLSRKQ 72
                568899**************9877665554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.26
                 HHHHTHHHHHHHHHHHH CS
        KdpC  13 vllgliYplavtgiaql 29 
                 +l+g+i p+ v+ ia  
  EHU01652.1 108 MLFGFIVPVWVLCIADR 124
                 68999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1196.28
//
Query:       EHU01653.1  [L=150]
Description: hypothetical protein CKS_0086 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-05   24.6   2.9    2.8e-05   24.3   2.9    1.2  1  Tropomyosin_1  Tropomyosin like
    0.00032   20.2   0.4    0.00038   20.0   0.4    1.1  1  ESAG1          ESAG protein
     0.0025   18.0   0.0      0.003   17.7   0.0    1.1  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
  ------ inclusion threshold ------
      0.014   15.8   2.0      0.014   15.8   2.0    1.9  2  CENP-H         Centromere protein H (CENP-H)
      0.016   15.4   1.5      0.056   13.7   0.9    1.9  2  DUF948         Bacterial protein of unknown function (DUF948)
      0.026   12.8   0.6      0.029   12.6   0.6    1.0  1  MCM3AP_GANP    MCM3AP domain of GANP
      0.045   13.1   3.4      0.058   12.7   3.4    1.1  1  DUF4763        Domain of unknown function (DUF4763)
      0.049   14.0   1.2      0.064   13.6   1.2    1.2  1  Gp-FAR-1       Nematode fatty acid retinoid binding protein (
       0.06   12.2   2.7       0.07   12.0   2.7    1.1  1  Spc7           Spc7 kinetochore protein
        0.1   11.1   0.8       0.11   11.0   0.8    1.1  1  FUSC           Fusaric acid resistance protein family
       0.16   11.7  10.5        1.3    8.8   1.1    2.8  2  DivIC          Septum formation initiator
       0.31    8.9   1.6       0.36    8.7   1.6    1.1  1  Prominin       Prominin
        0.4   10.7   5.1       0.77    9.8   5.1    1.5  1  TMF_DNA_bd     TATA element modulatory factor 1 DNA binding
       0.72   10.5   3.5        1.1    9.9   0.4    2.1  2  YabA           Initiation control protein YabA
       0.72   10.0  11.1       0.28   11.4   5.7    2.0  2  ATG16          Autophagy protein 16 (ATG16)
       0.81    8.8   6.9          2    7.5   1.3    1.9  2  HAP1_N         HAP1 N-terminal conserved region
       0.98    9.5   8.5        1.8    8.6   7.9    1.6  2  ADIP           Afadin- and alpha -actinin-Binding
        1.6    9.3   9.2        2.6    8.7   4.6    2.1  2  DUF883         Bacterial protein of unknown function (DUF883)
          2    7.7   9.3          2    7.6   0.3    1.9  2  DUF3450        Protein of unknown function (DUF3450)
          3    8.5   5.7        7.7    7.2   3.3    2.4  2  SlyX           SlyX


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   2.9   3.1e-08   2.8e-05      14      84 ..      28      98 ..      25     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.1e-08
  Tropomyosin_1 14 ekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiql 84
                   ++ ++l + + +le+ + +k+ +i++L  kn+ l + v+ l +++ke++e + + +k+++   + +rk+q 
     EHU01653.1 28 ARNSQLSATNERLEKLANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQD 98
                   6889999**********************************************999999988888999875 PP

>> ESAG1  ESAG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.4   4.2e-07   0.00038       3      76 ..      35     108 ..      33     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.2e-07
       ESAG1   3 eendklekLi.syGnemGdlvakvGGLfaevnesvravrkelpdaLikankyytaiaeitrtvWddvkaveadee 76 
                   n++lekL  s   ++ dl +k  GL a vn+ v av+++  + + ++ k  +a ae +r + d++k+  a ++
  EHU01653.1  35 ATNERLEKLAnSKDGQINDLRSKNDGLAASVNDLVNAVKEQ-NEVMGQVAKQRAATAEQNRKLQDEIKQYLAADK 108
                 5799*****7467889**********************876.78999********************98766654 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.3e-06     0.003      74     148 ..      30     108 ..      10     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.3e-06
     UPF0242  74 eaklteld...eglktkee.aleelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekq 148
                 +++l++++   e+l++ ++ ++++l+++++ L+  ++   +++++ +e   q+ ++  a+ae++ +l+ e+++ La  +
  EHU01653.1  30 NSQLSATNerlEKLANSKDgQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLAADK 108
                 34444444222555554446***********************99999999***********************99776 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2       1.1   9.9e+02      41      61 ..      28      48 ..      22      58 .. 0.53
   2 ?   15.8   2.0   1.6e-05     0.014       6      76 ..      56     127 ..      51     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.1
      CENP-H 41 rknrelaaellelakekesek 61
                ++n +l a+ ++l+k ++s++
  EHU01653.1 28 ARNSQLSATNERLEKLANSKD 48
                455555555555555555444 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.6e-05
      CENP-H   6 eqrdelssellklsqelrelqeeltevekenlrlkrknrelaael.lelakekesekeklkeelekleaelk 76 
                  ++d l+ ++ +l ++++e +e + +v k++ ++ ++nr+l  e+ + la +k++  +  ++++++l++  k
  EHU01653.1  56 SKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIkQYLAADKNAAAPVPADAVNRLRSAAK 127
                 67899****************************************77*****99999556666666666555 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   6.2e-05     0.056       9      78 ..      11      87 ..       5      98 .. 0.55
   2 ?    4.7   0.6     0.041        36      21      63 ..      72     114 ..      68     136 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.2e-05
      DUF948  9 AFvvLviflivvllklkktldeaaatieele.......kqvdpilkevedllakvnelledvneklekvdplteava 78
                A v+++ +++v+l  l+   ++++at e le        q++ +  + ++l a vn+l++ v+e+ e + ++ ++ a
  EHU01653.1 11 APVIVIGLICVALWGLNARNSQLSATNERLEklanskdGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRA 87
                55667777777777774444444444444442225555566666666666666666666666666665555555444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.041
      DUF948  21 llklkktldeaaatieelekqvdpilkevedllakvnelledv 63 
                 +++ ++++ ++a++ + + +q +++ +e+++ la  ++ ++ v
  EHU01653.1  72 VKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLAADKNAAAPV 114
                 5566788888899999999999999999999888777755544 PP

>> MCM3AP_GANP  MCM3AP domain of GANP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   3.2e-05     0.029     556     633 ..      33     110 ..      25     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
  MCM3AP_GANP 556 kssakslkesllesrvkkeesaekekeaslesaedlthtasaeellaerlsssleeEkeeskrfeeqLqqwleedsea 633
                   s +++  e+l +s+  + ++ ++++++   s++dl++ +++++ +  ++ ++  +  e++++ +++++q+l+ d++a
   EHU01653.1  33 LSATNERLEKLANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLAADKNA 110
                  455666678999999999999999999999*********************************************943 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.4   6.4e-05     0.058      86     154 ..      36     103 ..      29     111 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-05
     DUF4763  86 vdedlelelltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrlrklqkrlnel 154
                 ++e+le+ +++ +  +i++L+ +n  L   + +l    k++++ + ++ +++    ++ rklq +++++
  EHU01653.1  36 TNERLEKLANS-KDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQY 103
                 56666666666.9****************************************************9987 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.2   7.1e-05     0.064      36     100 ..      44     107 ..      30     131 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-05
    Gp-FAR-1  36 yknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpd 100
                 +++ d  ++ l +k++ L++ ++ l + +ke+ + +++ ak+ +    +++rkl++++ +    d
  EHU01653.1  44 ANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAAT-AEQNRKLQDEIKQYLAAD 107
                 3445556666666666666666666666666666666666665555.566666666655555555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.7   7.8e-05      0.07     175     252 ..      29     102 ..      21     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-05
        Spc7 175 ekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                 + ++l+++ e+l++    l++++  +++ lr++ + l a ++ + + ++e +e + +++++ ++++eq ++l++ei++
  EHU01653.1  29 RNSQLSATNERLEK----LANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQ 102
                 44444444444444....778888888888888888888888888888888888888888888888888888888886 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00013      0.11     231     330 ..      33     141 ..      14     150 .] 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
        FUSC 231 llallsslarllarlraeeaaavpe...laallaelaaleaaaaaealeaalaalrarlralrrale........adadtaalllarlaellaelaqll 318
                 l+a+   l++l +  + + ++ + +   laa + +l +  a + +++  +++a  ra+ ++++r l+        ad ++aa + a ++++l+++a + 
  EHU01653.1  33 LSATNERLEKLANSKDGQINDLRSKndgLAASVNDLVN--AVKEQNEVMGQVAKQRAATAEQNRKLQdeikqylaADKNAAAPVPADAVNRLRSAAKAA 129
                 33333333333333333333333333334444444433..23334445555555555555555544445557777888999999999999999999999 PP

        FUSC 319 aslraleaaiaa 330
                   +++ + a+++
  EHU01653.1 130 GGVQDNQPATSK 141
                 988888877765 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.1    0.0014       1.3       2      50 ..      16      68 ..      15      75 .. 0.77
   2 ?    5.2   4.3     0.019        17      19      50 ..      72     103 ..      69     111 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
                XXXXXXXXXXXXXXXXHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHCC- CS
       DivIC  2 lllfllllifgkkgllaykqlkqeiaalqa....elaklkaeneeLeaevkdL 50
                ++l++++l+ ++   ++++++++ +++l +    +++ l+ +n+ L+a v+dL
  EHU01653.1 16 IGLICVALWGLNARNSQLSATNERLEKLANskdgQINDLRSKNDGLAASVNDL 68
                67888888888888888888888888776544448999999999999999999 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                 +k++++ + +  ++ a+  ++n++L++e+k++
  EHU01653.1  72 VKEQNEVMGQVAKQRAATAEQNRKLQDEIKQY 103
                 45555555566666666666666666666654 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6    0.0004      0.36     624     706 ..      31     112 ..      24     136 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0004
    Prominin 624 vnletlaekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraen 706
                  +l+++ e+le+lan+ + + ++l+++    a +++++ +  v+++++ + ++ k+  +  e+n++lq++ik+ laa ++a  
  EHU01653.1  31 SQLSATNERLEKLANSKDGQINDLRSKNDGLAASVNDLVN-AVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLAADKNAAA 112
                 5667777777777777755544455544444445544432.344455555555555555555777777777777776666655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.1   0.00086      0.77       3      64 ..      40     101 ..      27     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00086
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekele 64 
                 lek+ ++KD qI+ L++    L+++ ++l n++k+ ++ + +  k+ + + ++++kl+ e++
  EHU01653.1  40 LEKLANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIK 101
                 78999999999999999999999999999999999999999999999999999988888886 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.37   3.3e+02      35      56 ..      27      48 ..      19      61 .. 0.70
   2 ?    9.9   0.4    0.0012       1.1       5      47 ..      60     102 ..      55     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.37
                HHHHHHHHHHHHHHHHHHXXXX CS
        YabA 35 leenaeLeleneklrerleeee 56
                  +n++L++ ne+l ++ ++++
  EHU01653.1 27 NARNSQLSATNERLEKLANSKD 48
                5678999999999988774333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLelenek 47 
                  l +++++l + ++e +e ++++ ++ a++ e+n++L+ e ++
  EHU01653.1  60 GLAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQ 102
                 5788999******************************998654 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.7   0.00032      0.28     105     156 ..      31      82 ..      25     101 .. 0.81
   2 ?    1.1   2.6      0.43   3.9e+02      29      64 ..      84     127 ..      80     148 .. 0.41

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
       ATG16 105 lelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdl 156
                  +l+++ ++le+ +++++ ++++l++++  l   ++d+ ++++e+++++ ++
  EHU01653.1  31 SQLSATNERLEKLANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVMGQV 82 
                 67899999*************************************9998744 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.43
       ATG16  29 drtsaleaenaklekaaasaks........sksskksakekeas 64 
                 ++ +a +++n+kl+ ++++  +         ++ + ++ +++a+
  EHU01653.1  84 KQRAATAEQNRKLQDEIKQYLAadknaaapVPADAVNRLRSAAK 127
                 55555555555555555554444333221322222222333333 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.4     0.022        20      91     120 ..      26      55 ..      24      61 .. 0.87
   2 ?    7.5   1.3    0.0022         2     204     244 ..      65     105 ..      62     109 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.022
      HAP1_N  91 LlkrNsvLternekLeeqLesareeiaqlr 120
                 L  rNs+L+++ne+Le+  +s   +i+ lr
  EHU01653.1  26 LNARNSQLSATNERLEKLANSKDGQINDLR 55 
                 5679************99999988999988 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0022
      HAP1_N 204 vldcveqlseanqqiaelseelarkleelerqqeeissLla 244
                 v+d+v+ ++e n+ + +++++ a   e++++ q+ei++ la
  EHU01653.1  65 VNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLA 105
                 799**********************************9987 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.9     0.002       1.8      58     137 ..      26     101 ..      24     107 .. 0.73
   2 ?    1.0   0.9      0.45     4e+02      55      71 ..      86     102 ..      80     128 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
        ADIP  58 lnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqyahelk 137
                 ln+++++l+a++erl++  ++ + q  +l+++++ + a  ++l  ++k++++ +     ++++++ a ++   +++ e+k
  EHU01653.1  26 LNARNSQLSATNERLEKLANSKDGQINDLRSKNDGLAASVNDLVNAVKEQNEVM----GQVAKQRAATAEQNRKLQDEIK 101
                 688999999999999999999999999999999999999999888888887643....3444555555555444444444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.45
        ADIP  55 reslnetirkleaeier 71 
                 r +++e++rkl+ ei++
  EHU01653.1  86 RAATAEQNRKLQDEIKQ 102
                 33333333333333322 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.8     0.051        46      12      53 ..      34      75 ..      27      86 .. 0.75
   2 ?    8.7   4.6    0.0029       2.6       7      75 ..      68     139 ..      65     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.051
      DUF883 12 adleellkeaadeageeaeelRerleerlerarerlrdaeea 53
                + ++e l++ a++ + ++++lR++ +  ++++ + +++++e+
  EHU01653.1 34 SATNERLEKLANSKDGQINDLRSKNDGLAASVNDLVNAVKEQ 75
                556666778888899999999999999999999888887776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0029
      DUF883   7 leslladleellkeaade...ageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwq 75 
                 l +++++ +e++ + a++   ++e+ ++l ++++++l++ +++++ +  ++++r ++aa+aa  +  ++P++
  EHU01653.1  68 LVNAVKEQNEVMGQVAKQraaTAEQNRKLQDEIKQYLAADKNAAAPVPADAVNRLRSAAKAAGGVQDNQPAT 139
                 5555666666666666651114556667889*****************************998777777766 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0023         2      56      98 ..      26      68 ..      22      71 .. 0.85
   2 ?    5.0   3.6     0.015        13      14      63 ..      61     110 ..      57     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0023
     DUF3450 56 lkeeleslevyneqlerlvasqeqeiasleeqieeieeierel 98
                l++++++l++ ne+le+l +s + +i++l+ + + + +  ++l
  EHU01653.1 26 LNARNSQLSATNERLEKLANSKDGQINDLRSKNDGLAASVNDL 68
                6889999*********************999999887766555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.015
     DUF3450  14 laatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeelesl 63 
                 laa+++++ ++ ++ ++   q+ k+  + +++ ++l++e+++  +  +++
  EHU01653.1  61 LAASVNDLVNAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLAADKNA 110
                 47889999999999999999999999999999999999999988887776 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.65   5.9e+02      39      55 ..      32      48 ..      26      67 .. 0.55
   2 ?    7.2   3.3    0.0086       7.7      17      55 ..      70     108 ..      50     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.65
                HHHHHHHT-XXXXXXXX CS
        SlyX 39 qlrllaerlkeleessg 55
                ql + +erl++l++s+ 
  EHU01653.1 32 QLSATNERLEKLANSKD 48
                45555555555544433 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0086
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  17 dtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 ++++e n+v+ + ++q ++  +q r+l++++k+  ++++
  EHU01653.1  70 NAVKEQNEVMGQVAKQRAATAEQNRKLQDEIKQYLAADK 108
                 568888999999999999999999999998877655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1920  (0.107089); expected 358.6 (0.02)
Passed bias filter:                      950  (0.0529868); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 1229.15
//
Query:       EHU01654.1  [L=141]
Description: lysozyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-26   91.7   0.0    4.6e-26   91.4   0.0    1.1  1  Phage_lysozyme  Phage lysozyme
  ------ inclusion threshold ------
      0.097   13.0   0.0       0.22   11.9   0.0    1.6  2  DUF4376         Domain of unknown function (DUF4376)


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   5.2e-30   4.6e-26       1     108 [.      28     133 ..      28     134 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 5.2e-30
                     CEEEETTBCSSSCCTTHH-EHHHHHHHHHHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCHHHHHHHGGGSSE CS
  Phage_lysozyme   1 ywtigiGekgkdvsphkritkeeaagryekdlktaerkikqyikvkdfepnqqdalvslafnvGkgGkrkastllralnagdwkkacsairkslk 95 
                     ++tig+G ++  v+++  it e+a++ +++dl+ ae  i++++kv ++++nq+dal+s++fn G  G++++stll++ln gd+++a++++ ++++
      EHU01654.1  28 IPTIGYG-HTRGVKMGDVITGEQADAFLREDLQVAELTINTNVKV-KLTQNQFDALTSFVFNLGS-GNFVKSTLLKKLNLGDYAGAADEFGRWVN 119
                     68*****.************************************9.******************8.8**************************** PP

                     E.TCCCHHHHHHHH CS
  Phage_lysozyme  96 a.GkelnglknRre 108
                     a Gk+l gl++Rr+
      EHU01654.1 120 AgGKQLAGLVKRRA 133
                     ************97 PP

>> DUF4376  Domain of unknown function (DUF4376)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.22       3      89 ..      18     101 ..      17     103 .. 0.85
   2 ?   -1.2   0.0      0.29   2.6e+03      34      58 ..      99     124 ..      90     127 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
     DUF4376   3 eieawRdeaeaggvev.nGkridtdeesrarlsgvllsaklageqgeeaWtladntvvtLtadqlialgqavaqhkqaifdrerelka 89 
                 eiea+Rd+    ++ +   + ++  +      ++++l+ +l+ ++     t   n +v+Lt+ q+ al+  v   ++++f +++ lk+
  EHU01654.1  18 EIEAYRDSVNIPTIGYgHTRGVKMGDVITGEQADAFLREDLQVAE----LTINTNVKVKLTQNQFDALTSFVFNLGSGNFVKSTLLKK 101
                 788888888888888866667888888888888888888888888....999************************999999887775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.29
     DUF4376  34 sgvllsaklageqgee.aWtladntv 58 
                  ++l  ++ ag+++e   W  a++++
  EHU01654.1  99 LKKLNLGDYAGAADEFgRWVNAGGKQ 124
                 44555556666665556777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1199.46
//
Query:       EHU01655.1  [L=87]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-16   58.3   0.1    7.7e-16   58.1   0.1    1.0  1  Phage_antitermQ  Phage antitermination protein Q
     0.0093   15.6   0.1      0.019   14.6   0.0    1.6  2  Sigma70_r4_2     Sigma-70, region 4
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.057   13.2   0.0    1.2  1  HTH_10           HTH DNA binding domain
       0.12   12.5   0.0       0.18   12.0   0.0    1.2  1  HTH_28           Helix-turn-helix domain
       0.13   11.9   0.0       0.18   11.4   0.0    1.3  1  HTH_50           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1   2.1e-19   7.7e-16      51     118 .]       1      68 [.       1      68 [. 0.98

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 2.1e-19
  Phage_antitermQ  51 liidgcvarLkkkrpeelellvdyYvfgvskraiarklkisekevrkklqkaegfiegclaaldvkle 118
                      ++i++++ rL+k++++ + ll  +Y+ +++ ra+a+kl+is+++v+ ++q+ae+fi+g l++ld++le
       EHU01655.1   1 MFINEAMIRLSKHDEYLCALLEWHYIENLPLRAMATKLGISHNQVSVRIQAAESFIQGSLCTLDIRLE 68 
                      78****************************************************************97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.3e-06     0.019      18      50 ..      20      52 ..      19      56 .. 0.92
   2 ?   -2.8   0.1       1.5   5.4e+03      11      19 ..      79      87 .]      78      87 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.3e-06
                  HHHHHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2 18 ifllryleglsykEIAellgisegtVksrlsRA 50
                   ++ +y+e+l+ +  A +lgis + V  r++ A
    EHU01655.1 20 LLEWHYIENLPLRAMATKLGISHNQVSVRIQAA 52
                  5899**************************988 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                  S-HHHHHHH CS
  Sigma70_r4_2 11 Lperqreif 19
                  Lp++ ++++
    EHU01655.1 79 LPPKLKRVV 87
                  899999886 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.057      26      49 ..      31      54 ..      28      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
      HTH_10 26 lkeLAkelGIskstlsehLrkaes 49
                l+++A +lGIs + +s ++++aes
  EHU01655.1 31 LRAMATKLGISHNQVSVRIQAAES 54
                789*******************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     5e-05      0.18      10      38 ..      26      54 ..      18      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
      HTH_28 10 aaGhsvreaArelgisrrtvyrWikryee 38
                ++  + r+ A +lgis+ +v++ i++ e+
  EHU01655.1 26 IENLPLRAMATKLGISHNQVSVRIQAAES 54
                5556899******************9885 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.2e-05      0.18      26      43 ..      31      48 ..      18      51 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.2e-05
      HTH_50 26 tRklAkrLGvShtaiank 43
                 R +A +LG+Sh  +  +
  EHU01655.1 31 LRAMATKLGISHNQVSVR 48
                69**********877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 714.29
//
Query:       EHU01656.1  [L=327]
Description: putative phage DNA primase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-11   44.7   8.2      2e-11   43.9   8.2    1.4  1  Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
    5.2e-11   42.8   0.0      1e-10   41.8   0.0    1.5  1  Toprim_3        Toprim domain


Domain annotation for each model (and alignments):
>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   8.2   2.3e-15     2e-11       4      38 .]      31      63 ..      28      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.3e-15
                    E--TTTT-TTTEEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon  4 spCPvCGGrDrFrfddkdgrGtwfCrqCggggdgl 38
                     +CPvC ++++Fr+ddk+grGtw+C +C g+gdg+
      EHU01656.1 31 KECPVCNRKGKFRIDDKEGRGTWIC-SC-GSGDGW 63
                    69***********************.**.****97 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.2e-14     1e-10       2      91 ..     221     312 ..     220     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.2e-14
    Toprim_3   2 liivEGietaLsileartgaaviAllsaanlkaiawpergkrvviaaDnDaand..Greaaeklaer.leaagieavllepaegeDwndvlqk 91 
                 l i+EGietaLs  ++  g+ ++ +++a+ ++++  p ++++++i+ D D + +    +a+e + ++ l+++++e v++   +g+D+nd+++ 
  EHU01656.1 221 LGIAEGIETALSC-KQLYGVNTWSVINANFMEKFLAPAGVTHLIIFTDMDRHTAtgHAKAFECAHKNlLAKNDVEKVTVRWCDGGDFNDLIMN 312
                 789**********.99**********************************998896566666665551566******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:01.45
# Mc/sec: 684.56
//
Query:       EHU01657.1  [L=446]
Description: hypothetical protein CKS_0091 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-07   31.5   0.0    4.3e-07   30.3   0.0    1.6  1  Helicase_C  Helicase conserved C-terminal domain
     0.0058   16.7   0.0      0.013   15.6   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.068   13.2   1.1       0.14   12.2   1.1    1.4  1  DZR         Double zinc ribbon
          1    9.3   4.0        1.7    8.6   4.0    1.3  1  zf-HIT      HIT zinc finger


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   9.6e-11   4.3e-07      12     109 ..     172     268 ..     164     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 9.6e-11
                 HTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                 ++ e++ +++f+ +++++    ++++++   g+++ ++   +p++er+ i+++f +g ++v++   v+  G d  +v+++i   + ++  + iq  GR 
  EHU01657.1 172 QHGENRPTVCFCVNQSHA---GFITTEFnraGVSAEIIIDATPSDERRMIIHRFEQGATKVIVNVGVLTAGFDS-DVRCIIYARPTKSEMRWIQCLGRG 266
                 556778899999999988...45543444459*****************************************9.8**********************9 PP

                 SS CS
  Helicase_C 108 gR 109
                  R
  EHU01657.1 267 LR 268
                 88 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.8e-06     0.013      59     170 ..       2      94 ..       1      95 [. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
                 EEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT- CS
      ResIII  59 flvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekf 157
                 f++p ++l+ qt  +f ++  ++++ i+ ++++  +k+   ++ ++ i +++ ++l +++           +d++d++i+DEaH  ++  +  e+++  
  EHU01657.1   2 FVAPYLTLVHQTAARFVQYGIPEDQ-ISYVWRD--YKP---HDPDRLIQIASADTLIRRE----------FPDNIDLLIVDEAHMKRR--ALLEVIRD- 81 
                 99*****************999953.4444444..444...3578888888888888888..........9*************9998..45555454. PP

                 --SEEEEEESS-S CS
      ResIII 158 keavllglTATpe 170
                 ++  ++gl++Tp 
  EHU01657.1  82 SDIRVIGLSGTPF 94 
                 5699*******96 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.1   3.1e-05      0.14      28      49 .]     322     343 ..     305     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
         DZR  28 edrCpsCgekvdpearfCpeCG 49 
                 ++ C++C+ + +++  +Cp+CG
  EHU01657.1 322 PKECSQCHFMKPAGVYVCPKCG 343
                 7778888888888888888887 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.0   0.00038       1.7       3      20 ..     323     343 ..     321     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00038
                 -B-TTT-S...B-SEE-TTT- CS
      zf-HIT   3 klCgvCgf...pakYkCpkCn 20 
                 k C+ C+f    + Y CpkC+
  EHU01657.1 323 KECSQCHFmkpAGVYVCPKCG 343
                 67********999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3104.92
//
Query:       EHU01658.1  [L=250]
Description: hypothetical protein CKS_0092 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1934.62
//
Query:       EHU01659.1  [L=113]
Description: hypothetical protein CKS_0093 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 956.31
//
Query:       EHU01660.1  [L=76]
Description: hypothetical protein CKS_0094 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.14   11.6   0.0    1.1  1  PrsW-protease  PrsW family intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> PrsW-protease  PrsW family intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-06      0.14      80     109 ..      41      70 ..      16      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-06
  PrsW-protease  80 ivygaavglGFavlEnllYyvqalpsaane 109
                     v+g+a+  G +++Enl +++ ++++++n+
     EHU01660.1  41 AVIGVATHSGMTAFENLQNALDKVSKSEND 70 
                    49*******************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 624.94
//
Query:       EHU01661.1  [L=62]
Description: hypothetical protein CKS_0095 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.066   13.3   0.0      0.095   12.8   0.0    1.3  1  RsbU_N    Phosphoserine phosphatase RsbU, N-terminal domain


Domain annotation for each model (and alignments):
>> RsbU_N  Phosphoserine phosphatase RsbU, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.3e-06     0.095      55      75 .]      10      30 ..       3      30 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-06
                -HHHHHHHHHHHHHHHHHHHH CS
      RsbU_N 55 pedvqasldfLlEvmiaygla 75
                 ++v++ l++L++vm +y+l+
  EHU01661.1 10 AKNVSQQLNVLIQVMYSYDLT 30
                5789999************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 561.16
//
Query:       EHU01662.1  [L=114]
Description: hypothetical protein CKS_0096 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1038.30
//
Query:       EHU01663.1  [L=127]
Description: hypothetical protein CKS_0097 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1150.28
//
Query:       EHU01664.1  [L=191]
Description: hypothetical protein CKS_0098 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1581.66
//
Query:       EHU01665.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-97  326.7   4.3    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
      3e-16   59.4   0.1    1.3e-15   57.3   0.1    2.3  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    6.3e-10   39.7   8.7    1.3e-09   38.6   8.7    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.015   14.5   0.7      0.028   13.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.03   14.6   4.4       0.13   12.6   0.7    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.035   14.0   0.3         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.038   12.6   7.0       0.06   11.9   7.0    1.3  1  FUSC             Fusaric acid resistance protein family
      0.039   13.2   0.5      0.064   12.5   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.071   12.9   7.6       0.11   12.2   7.6    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.093   12.3   2.4        0.1   12.2   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.11   12.8   2.3       0.29   11.5   2.3    1.7  1  HalX             HalX domain
       0.17   11.7  10.2       0.28   11.0  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.35   10.5   2.5          1    9.0   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.46   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.52   10.4  10.4       0.91    9.6  10.4    1.3  1  DHR10            Designed helical repeat protein 10 domain
        1.1    9.4   6.1          4    7.6   0.3    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    7.7   7.2        5.2    6.6   7.2    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.3    6.8   8.2        3.4    7.8   5.1    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
          9    7.0   8.8         16    6.2   2.2    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.8      0.14   1.2e+02     167     222 ..      34      92 ..      22     121 .. 0.43
   2 !  325.1   0.0  4.5e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
  DDE_Tnp_IS66 167 sqaaaealarigklyaierear.ea...eaeerlalrqeesrpllaeleawleeqlkkvl 222
                   sq++a   ++i++l+a+ ++++  +   ++e+ ++  +++ r+ ++++ a l+e+ ++vl
    EHU01665.1  34 SQRVAAYASEINRLKALVAKLQrIQfgkSSEKLREKTARQVREAEERISA-LQEEMAEVL 92 
                   45566566667777776666643113332233333333333333333333.222222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.5e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01665.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01665.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01665.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01665.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01665.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   8.7   1.6e-12   1.3e-09       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.6e-12
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r +FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU01665.1  46 RLKALVAKLQRIQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   3.3e-05     0.028      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01665.1  34 SQRVAAYASEINRLKALVAKLQRIQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   0.00015      0.13      22      55 ..      23      56 ..      13      73 .. 0.81
   2 ?    2.9   0.4      0.17   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaelee 55
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+ 
  EHU01665.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56
                7888889************************985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01665.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.6   2.2e+03      26      54 ..      16      44 ..       9      59 .. 0.78
   2 ?    5.1   0.0     0.024        21      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.6
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01665.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.024
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU01665.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01665.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   7.0     7e-05      0.06     213     295 ..       4      92 ..       1     123 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01665.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999997777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   7.5e-05     0.064      24      77 ..      37      92 ..      33     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.5e-05
        Tho2 24 keqYekeieklkseieelakdrsde..raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++++  +  ++  +k  ++ ++ +e+i++L+eE++e  
  EHU01665.1 37 VAAYASEINRLKALVAKLQRIQFGKssEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************8777443335566677788888999********99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.6   0.00013      0.11     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01665.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRIQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862578999**********************************99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   0.00012       0.1     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU01665.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRIQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   3344444555555556666666778899999999998888665543889999999***99999************9999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01665.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.3   0.00033      0.29       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00033
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU01665.1 37 VAAYASEINRLKALVAKLQRIQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  10.2   0.00032      0.28      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01665.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999************************************9999877335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0012         1     152     191 ..      17      56 ..       4      65 .. 0.86
   2 ?    1.4   0.2      0.26   2.3e+02      97     130 ..      63      96 ..      61     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLee 191
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ 
  EHU01665.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQR 56 
                 6779**********************************84 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvs 130
                 +++L++  ++++ +a+e +++l++e+ ++l +  
  EHU01665.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5677888888999999999999999999887655 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01665.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01665.1 167 ACCSCDHI 174
                  35555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  10.4    0.0011      0.91      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01665.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789*****************************************9988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0047         4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0047
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01665.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01665.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0019       1.6      12      92 ..      13      95 ..       7     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01665.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677889999999999999999999999***********9997744224455566666666666666666888777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.2    0.0061       5.2      70     153 ..      13      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0061
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU01665.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRIQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55566666666666666666677777888888888888888885542278888999************************998774 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.1     0.004       3.4      45     141 ..      11     115 ..       6     117 .. 0.62
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfleaq......kellakaeekleelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +      k++ +  e+++++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU01665.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqriqfgKSSEKLREKTARQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 556778888888888888888888777766665555555544330000113333444555666777778888888888776633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU01665.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU01665.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.2     0.019        16      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    3.0   0.9      0.18   1.6e+02      34      57 ..      68      91 ..      61      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01665.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.18
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01665.1 68 EKTARQVREAEERISALQEEMAEV 91
                567888899999998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                     1013  (0.0565006); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 3818.05
//
Query:       EHU01666.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01666.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 878.70
//
Query:       EHU01667.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01667.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01667.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01667.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01667.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 898.31
//
Query:       EHU01668.1  [L=139]
Description: hypothetical protein CKS_0102 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   12.7   0.1       0.18   12.0   0.1    1.3  1  Cortex-I_coil  Cortexillin I, coiled coil


Domain annotation for each model (and alignments):
>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     1e-05      0.18      40      77 ..       8      45 ..       2      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil 40 delesllasleseaaerekrlreleakldealknlele 77
                   +  ++++a++   + e+e+rl+ +e+k+de+   +e+ 
     EHU01668.1  8 KTQNEIIAAMALANVEQERRLNTVESKVDEVAETVENI 45
                   566899999999******************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1117.42
//
Query:       EHU01669.1  [L=163]
Description: putative phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1221.78
//
Query:       EHU01670.1  [L=41]
Description: hypothetical protein CKS_0105 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 373.95
//
Query:       EHU01671.1  [L=74]
Description: hypothetical protein CKS_0106 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 679.42
//
Query:       EHU01672.1  [L=80]
Description: hypothetical protein CKS_0107 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 773.93
//
Query:       EHU01673.1  [L=55]
Description: hypothetical protein CKS_0108 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.12   12.5   0.2       0.13   12.4   0.2    1.1  1  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX


Domain annotation for each model (and alignments):
>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2     7e-06      0.13      88     118 ..       9      37 ..       2      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-06
  Peptidase_C92  88 aalrrlgkpYdfgFeleddrlYCsklVakay 118
                    + +rr g  Yd++   ++d  YC ++V+++ 
     EHU01673.1   9 MMRRRYGRRYDLT--RDQDGFYCREIVRRML 37 
                    5578889999998..88***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 544.17
//
Query:       EHU01674.1  [L=67]
Description: hypothetical protein CKS_0109 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 569.70
//
Query:       EHU01675.1  [L=122]
Description: SOS-response repressor/protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-19   69.7   0.1    4.8e-19   67.9   0.1    1.8  2  LexA_DNA_bind  LexA DNA binding domain
     0.0078   16.5   0.1      0.017   15.4   0.1    1.6  2  Rrf2           Transcriptional regulator


Domain annotation for each model (and alignments):
>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.1   5.3e-23   4.8e-19       1      65 []       1      65 [.       1      65 [. 0.99
   2 ?   -0.7   0.0      0.14   1.2e+03      37      56 ..     105     122 .]      97     122 .] 0.77

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 5.3e-23
                   XX---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CCG CS
  LexA_DNA_bind  1 mkkLTerQrevldlikasieetgypPsireiaralglkSpsaveehLkaLerKGyierdpgkpRa 65
                   m++LT+ Q++ ld+i+ +i e+g  P+i+eia+ +g +Sp++++ h +aL++KG ++++ g+ R+
     EHU01675.1  1 MEQLTDTQQRTLDFIRGYIRENGLSPTIAEIAEGMGWRSPNSAQIHVNALQQKGRLKVKRGANRG 65
                   99************************************************************997 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.14
                    S-.HHHHHHHHHHHHHTTSE CS
  LexA_DNA_bind  37 lkSpsaveehLkaLerKGyi 56 
                    l+  +a++     L  KG++
     EHU01675.1 105 LQ--AAIHTEVINLMIKGVV 122
                    44..8899999999999986 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.9e-06     0.017      25      70 ..      25      71 ..      15      84 .. 0.82
   2 ?   -2.0   0.0      0.52   4.7e+03       7      21 ..      80      94 ..      77      99 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-06
                -B-HHHHHHHHTS.-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSH CS
        Rrf2 25 pvsseeiaerqni.spsylekilakLrkaglvksvrGkgGGyrLakp 70
                + +++eiae ++  sp+ ++  ++ L+++g +k++rG++ G++L+  
  EHU01675.1 25 SPTIAEIAEGMGWrSPNSAQIHVNALQQKGRLKVKRGANRGIVLTTT 71
                46899****99872566666679*********************875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.52
                HHHHHHHHHHHHHSS CS
        Rrf2  7 teyalhallyLakee 21
                +e a++++ +++k +
  EHU01675.1 80 LETAVRIMGIIEKAK 94
                567888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1104.23
//
Query:       EHU01676.1  [L=167]
Description: hypothetical protein CKS_0112 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-60  201.3   0.2    7.6e-60  201.1   0.2    1.0  1  DUF1198   Protein of unknown function (DUF1198)


Domain annotation for each model (and alignments):
>> DUF1198  Protein of unknown function (DUF1198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.2   4.2e-64   7.6e-60       1     142 [.       1     142 [.       1     143 [. 0.99

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 4.2e-64
                 XXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHT--THHHHHHHHTS-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHH CS
     DUF1198   1 miWlilatlvvvfivGfrvltsdtrraikrlserLkiepvyveslldemGktageefvrylsrgneehlqnaaqvlliyqvfivdeseenlerWrrllr 99 
                 miWli+atlvvvf++Gf++lt+++r+a+++ls+rL++ pv++es+l+ mGk+a++ef++y+s +ne+hl+n+a+vl+i+qv+ivd+s+enl rW+  l+
  EHU01676.1   1 MIWLIIATLVVVFVIGFQLLTAGSRHAAQALSKRLQLPPVHIESMLSLMGKEAAKEFTDYISDDNEAHLNNGAAVLVIWQVMIVDGSDENLWRWHGALS 99 
                 9************************************************************************************************** PP

                 HTT------HHHHHHHHHHTGGG---HHHHHHHHHHHHHHHS- CS
     DUF1198 100 karlaaelseeqvrlalgflrelepdaeelaafrrrynelfap 142
                 +a ++a++s +q+ lalgflr+lepd +el+a+r++yn+  ++
  EHU01676.1 100 RAGFTATISRQQLLLALGFLRQLEPDSHELNALREQYNTRVTQ 142
                 **************************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      805  (0.0448993); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1490.69
//
Query:       EHU01677.1  [L=288]
Description: 5,10-methylene-tetrahydrofolate dehydrogenase/cyclohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-69  230.0   0.0    1.3e-68  229.4   0.0    1.3  1  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase
    8.2e-39  132.5   0.1    1.2e-38  131.9   0.1    1.3  1  THF_DHG_CYH     Tetrahydrofolate dehydrogenase/cyclohydrolase
  ------ inclusion threshold ------
      0.071   12.7   0.0       0.13   11.8   0.0    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.0   2.1e-72   1.3e-68       1     157 [.     124     280 ..     124     283 .. 0.99

  Alignments for each domain:
  == domain 1  score: 229.4 bits;  conditional E-value: 2.1e-72
                    SHHHHHHHHTT--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GG CS
  THF_DHG_CYH_C   1 hplnlgrlvkgeeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikae 96 
                    hp+n+grl+++ ++l+pctp+g+v+ll++++i+  g ++vvvG+snivg+p+++ Ll +++t+tv+h+ t+dl++++++ad+++vavGkp++i ++
     EHU01677.1 124 HPYNVGRLCQRAPKLRPCTPRGIVTLLERYNIDAYGLNAVVVGASNIVGRPMSMELLLAGCTTTVTHRFTRDLRHHVEHADLLIVAVGKPHFIPGD 219
                    89********************************************************************************************** PP

                    GS-TT-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C  97 mvkegavviDvGinrvekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaak 157
                    ++k+ga+viDvGinr+e+gk+vGDvd+e++ e as+itPvpgGVGpmTva+l++ntl+a++
     EHU01677.1 220 WIKPGAIVIDVGINRLESGKVVGDVDYEAAFERASYITPVPGGVGPMTVATLIQNTLQACE 280
                    **********************************************************987 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.1   2.1e-42   1.2e-38       1     116 []       5     121 ..       5     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 2.1e-42
                  E--HHHHHHHHHHHHHHHHHHHHHH.T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-S CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkek.gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlp 97 
                  ++dGk++a+++r e++e+v++  +  +++p+Lav+lvg++pas++Yv +k++aceevG+ s+ ++lp+++se+ell+li++ln+d+++dGilvqlPlp
   EHU01677.1   5 IIDGKTIAQQVRLEVAEKVKQRLAAgKRAPGLAVVLVGENPASQIYVGSKRRACEEVGFISRSYDLPDTTSEAELLQLIDTLNSDNTIDGILVQLPLP 102
                  79******************96665488********************************************************************** PP

                  TTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  98 khidekaileaispeKDVD 116
                  + id+ ++le+i p+KDVD
   EHU01677.1 103 AGIDNVKVLERITPDKDVD 121
                  ******************9 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05      0.13      52      88 ..     178     214 ..     155     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
                     HHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B CS
  UDPG_MGDP_dh_N  52 eelvkkavesgrlsfttdvekaveeadvifiaVgTPs 88 
                     e l++ ++++   +ft d++++ve+ad++++aVg P 
      EHU01677.1 178 ELLLAGCTTTVTHRFTRDLRHHVEHADLLIVAVGKPH 214
                     4577888889999*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2349.67
//
Query:       EHU01678.1  [L=70]
Description: putative RNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-24   83.5   0.1    6.8e-24   83.5   0.1    1.0  1  S4_2      S4 domain
  ------ inclusion threshold ------
       0.01   15.5   0.1      0.018   14.7   0.0    1.5  2  S4        S4 domain


Domain annotation for each model (and alignments):
>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.1   7.6e-28   6.8e-24       6      64 ..      10      68 ..       4      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 7.6e-28
        S4_2  6 eyItLgqlLKlaglvesGgeaKafiaegeVkvNGevetrRgkKlraGdvVeidgetiev 64
                 ++ L++lLKl+g+vesG++aK  i +geV+v+Gevetr+++K+ +G++Ve++g++++v
  EHU01678.1 10 PHVDLCDLLKLEGWVESGAQAKVAIGDGEVRVDGEVETRKRCKIFQGQTVEFAGQRVTV 68
                6899*****************************************************99 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     2e-06     0.018      13      36 ..      24      47 ..      16      50 .. 0.86
   2 ?   -2.9   0.0      0.65   5.8e+03      32      35 ..      63      66 ..      56      68 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-06
                SSSHHHHHHHHHTTTEEETTEEE- CS
          S4 13 assrreArqlIehGrVlVNGkvvk 36
                ++s  +A+ +I +G V+V+G+v +
  EHU01678.1 24 VESGAQAKVAIGDGEVRVDGEVET 47
                67889****************966 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.65
                TEEE CS
          S4 32 Gkvv 35
                G++v
  EHU01678.1 63 GQRV 66
                3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 555.15
//
Query:       EHU01679.1  [L=368]
Description: putative RecF family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-24   85.6   0.0    2.3e-16   60.5   0.1    2.2  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    3.9e-16   59.7   0.0    1.1e-09   38.5   0.0    2.1  2  AAA_15    AAA ATPase domain
    3.2e-14   52.9   0.0    4.9e-08   32.7   0.0    2.2  2  SMC_N     RecF/RecN/SMC N terminal domain
    3.2e-07   31.0   0.0    5.1e-07   30.4   0.0    1.2  1  AAA_23    AAA domain
    6.6e-06   25.6   0.0    1.3e-05   24.6   0.0    1.5  1  DUF2813   Protein of unknown function (DUF2813)
     0.0014   19.1   0.0      0.012   16.1   0.0    2.1  2  ABC_tran  ABC transporter
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.036   13.8   0.0    1.3  1  AAA_30    AAA domain
      0.071   12.7   0.0       0.14   11.7   0.0    1.5  1  AAA_27    AAA domain


Domain annotation for each model (and alignments):
>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.8e-08   4.1e-05       1      75 [.      24      98 ..      24     134 .. 0.73
   2 !   60.5   0.1     1e-19   2.3e-16     230     301 ..     269     338 ..     158     340 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.8e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryg 75
                lnv+ GpNg+GKSnL +a +ll+ +++    l   + gg++  ++++ l+++d + + +  i  + +++++y+ +
  EHU01679.1 24 LNVVSGPNGCGKSNLYKAVRLLHEAANGRLALALAEEGGVQKVMWAGGLRRGDRRHDPKRLILAVTMDDMDYQLE 98
                799*******************99866666666666666666666666666666555555555577777777665 PP

  == domain 2  score: 60.5 bits;  conditional E-value: 1e-19
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 + l ++e+SdGt+r+l+l++all+ +++ ++ ++ EpEn+LH  ll+ l+ l+ e+s+  +Q+ +t+HSp l
  EHU01679.1 269 RLLESAEFSDGTLRFLCLVVALLSPRPP-AFMALNEPENSLHEDLLPALAALIAEASQ-FSQLWITSHSPRL 338
                 56788999********************.*****************************.***********87 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   4.9e-13   1.1e-09       1      47 [.       1      46 [.       1      68 [. 0.94
   2 !   19.4   0.0   3.1e-07    0.0007     322     368 ..     294     338 ..     263     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 4.9e-13
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFl 47
                M Ik+i+i+ FRs +d +++l + l+v+ G+N++GKS++ +a  l+ 
  EHU01679.1  1 MTIKQIHIRGFRSVRDLTLPLHP-LNVVSGPNGCGKSNLYKAVRLLH 46
                99*********************.****************9988775 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.1e-07
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSphi 368
                  ++++ ++ EPE++LH ++   l+ l++e+++ +  Q+ it+HSp +
  EHU01679.1 294 RPPAFMALNEPENSLHEDLLPALAALIAEASQFS--QLWITSHSPRL 338
                 5679***************************999..********965 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.2e-11   4.9e-08       2      45 ..       3      43 ..       2      53 .. 0.92
   2 !   18.5   0.0   4.8e-07    0.0011     134     211 ..     273     348 ..     132     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 2.2e-11
                EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAil 45
                +k++ i++F+s   +  +lp+++ ++++ GpNG+GKsnl  A++
  EHU01679.1  3 IKQIHIRGFRSV--RDLTLPLHP-LNVVSGPNGCGKSNLYKAVR 43
                99**********..69*******.******************96 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 4.8e-07
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 + ++S G  tL  l L++A+ + +p +++ l e +  L e    ++a l+ e+s+ +Q+ ++s++ ++ +   +   v
  EHU01679.1 273 SAEFSDG--TLRFLCLVVALLSPRPPAFMALNEPENSLHEDLLPALAALIAEASQFSQLWITSHSPRLATLIAQHAEV 348
                 3456666..788999*************************************************99887766655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.3e-10   5.1e-07       1      41 [.       5      44 ..       5      45 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.3e-10
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAikl 41
                +++i++frs rd ++ ++ +l++++GpNG+GK+ +  A++l
  EHU01679.1  5 QIHIRGFRSVRDLTLPLH-PLNVVSGPNGCGKSNLYKAVRL 44
                59***************9.*****************99986 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.9e-09   1.3e-05       1      46 [.       1      46 [.       1      53 [. 0.93

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.9e-09
     DUF2813  1 myLerieisGFRGinrLSlsleentvLiGENaWGKSSLldALslil 46
                m +++i i GFR ++ L l l++++v+ G N  GKS L +A  l+ 
  EHU01679.1  1 MTIKQIHIRGFRSVRDLTLPLHPLNVVSGPNGCGKSNLYKAVRLLH 46
                899**************************************98875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.5e-06     0.012      13      44 ..      24      55 ..      15      96 .. 0.86
   2 ?    0.5   0.0      0.36   8.1e+02     106     135 ..     273     304 ..     207     306 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.5e-06
                EEEEEESTTSSHHHHHHHHTTSS--SEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGeill 44
                + ++ G+nG+GKS L k++  l++ ++G++ l
  EHU01679.1 24 LNVVSGPNGCGKSNLYKAVRLLHEAANGRLAL 55
                56788********************9999855 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.36
                 SGGS-HHHHHHHHHHHHHHHT..SSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
    ABC_tran 106 pssLSgGqkqrvalarallkk..pkllllDEp 135
                  +++S G  + ++l+ all+   p ++ l Ep
  EHU01679.1 273 SAEFSDGTLRFLCLVVALLSPrpPAFMALNEP 304
                 378999****9999999996411556666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.036      19      62 ..      23      67 ..      12      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvL 62
                 + v+ Gp G GK+ + ka+r ++eaa g+  ++lA +g + kv+
  EHU01679.1 23 PLNVVSGPNGCGKSNLYKAVRLLHEAAnGRLALALAEEGGVQKVM 67
                5789***********************666667888888777666 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.3e-05      0.14       1      47 [.       1      43 [.       1      48 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
      AAA_27  1 MrlerLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAis 47
                M +++++++ + ++ d +l ++     l ++ GpN  GKs + +A++
  EHU01679.1  1 MTIKQIHIRGFRSVRDLTLPLH----PLNVVSGPNGCGKSNLYKAVR 43
                8889999999999999888887....8*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2827.71
//
Query:       EHU01680.1  [L=461]
Description: cysteinyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-142  473.7   0.0     3e-142  473.4   0.0    1.1  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
      6e-27   93.9   0.9    4.7e-26   91.0   0.4    2.7  2  DALR_2        DALR domain
    1.3e-13   50.5   1.1    9.3e-06   24.6   0.0    2.3  2  tRNA-synt_1g  tRNA synthetases class I (M)
    4.2e-07   28.6   0.1    6.2e-06   24.7   0.0    2.1  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    3.6e-05   22.8   0.0     0.0071   15.3   0.0    2.3  2  tRNA-synt_1f  tRNA synthetases class I (K)
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.054   13.6   0.0    1.5  1  Mut7-C        Mut7-C RNAse domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.4   0.0    1e-145    3e-142       2     300 ..      15     313 ..      14     314 .. 0.99

  Alignments for each domain:
  == domain 1  score: 473.4 bits;  conditional E-value: 1e-145
                   ---SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB- CS
  tRNA-synt_1e   2 vkpleekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptle 98 
                   ++p++ +k+ +YvCG+tvyd +h+Gh+R++vafD++ r+l+++gYdv++v+n+tDidDkiikra+e+++s+++l++++i e+++d++aL++l+p++e
    EHU01680.1  15 FTPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRYVGYDVNYVRNITDIDDKIIKRANENGESIETLTNRMIGEMHSDFDALGILPPDVE 111
                   678999******************************************************************************************* PP

                   -BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHHT----S--S-SSTT-EEEEEE--TTS--B--TTSSEEE-SSHH CS
  tRNA-synt_1e  99 prvsekvdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleelelgaegevseekkdkkDfaLWkaskegepswdsPwgkGRPGWhie 195
                   pr++ ++++ii lve+li++g+aY++++gdv+fdv ++ +Yg ls+q+le+l++ga++ev++ k++++Df+LWk+sk++epsw+sPwg+GRPGWhie
    EHU01680.1 112 PRATRHIPDIIALVETLIARGHAYVADNGDVMFDVLSDVDYGALSRQDLEQLQAGARVEVADVKRNPMDFVLWKMSKADEPSWPSPWGNGRPGWHIE 208
                   ************************************************************************************************* PP

                   HHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE- CS
  tRNA-synt_1e 196 CsvmaskllgseidihsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfk 292
                   Cs+m++k+lg ++dih+GG+DL+fPhhene+aqs++a+d ++v+y++h+g+++i++ekmsksL+nf+t++dvl+++d++++R++l+s hyrsql++ 
    EHU01680.1 209 CSAMNCKQLGAHFDIHGGGSDLMFPHHENEIAQSTCAHDGPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLRHYDAETVRYFLMSGHYRSQLNYG 305
                   ************************************************************************************************* PP

                   HHHHHHHH CS
  tRNA-synt_1e 293 eelleeak 300
                   e++l++a+
    EHU01680.1 306 EDNLNQAR 313
                   ****9986 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.4   1.6e-29   4.7e-26       1      63 []     341     402 ..     341     402 .. 0.98
   2 ?   -0.7   0.0       0.7   2.1e+03      24      57 ..     418     450 ..     412     454 .. 0.65

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 1.6e-29
                 HHHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHGGGT-S-S-HHHH- CS
      DALR_2   1 kFeeaMdDDFNTaeAiavlFelakeiNralkeedkaaasalkallrelaevLGllqeepeafl 63 
                 +F+eaM+DDFNT+eA++vlF++a+e+Nr lk+ed  +asal+a lre+a+vLG+lq+epe fl
  EHU01680.1 341 RFREAMNDDFNTPEAYSVLFDMAREVNR-LKSEDMTTASALAAKLREIADVLGILQQEPEVFL 402
                 7***************************.*******************************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.7
                 HHHHHHHHTT-HHHHHHHHHHHHHHHGGGT-S-S CS
      DALR_2  24 keiNralkeedkaaasalkallrelaevLGllqe 57 
                 +++ +  +++ +a++ a++++ r+  + LG+  e
  EHU01680.1 418 HWVKA-RADARAAKDWAQADVARDKLNALGVIVE 450
                 55555.5566666777777888888888888655 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.1e-09   9.3e-06      14      83 ..      36     105 ..      28     134 .. 0.95
   2 !   24.3   0.2   3.9e-09   1.2e-05     312     358 ..     251     297 ..     230     315 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.1e-09
                   --HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT- CS
  tRNA-synt_1g  14 lHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklni 83 
                    H+Gh ++ ++ D+++Ry r  g++v +v        +i  +A+++g + e l++++  e++++f+ l+i
    EHU01680.1  36 CHIGHGRTFVAFDVVSRYLRYVGYDVNYVRNITDIDDKIIKRANENGESIETLTNRMIGEMHSDFDALGI 105
                   7*****************************999999*****************************99987 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 3.9e-09
                   -S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS CS
  tRNA-synt_1g 312 pkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaea 358
                   ++  + +++++++ +K+SkS +++ +++++l ++da+++RY+l++ +
    EHU01680.1 251 VNYWMHSGMVMIDREKMSKSLNNFFTVRDVLRHYDAETVRYFLMSGH 297
                   555677899**********************************9743 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.024        73      38      66 ..      36      64 ..      26      72 .. 0.92
   2 !   24.7   0.0   2.1e-09   6.2e-06     518     600 ..     222     303 ..     209     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.024
  tRNA-synt_1 38 lHiGhalaktlkdivirykrmkGkevlyv 66
                  HiGh  + +  d+v ry r  G++v+yv
   EHU01680.1 36 CHIGHGRTFVAFDVVSRYLRYVGYDVNYV 64
                 6*************************997 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 2.1e-09
  tRNA-synt_1 518 dmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltlilsdvgrdin 600
                  d+   G+D ++   ++ i +s+    + P+ +  +h+ ++  +  KmSKsl N     dv+++y a+ +R++l++ ++ +++n
   EHU01680.1 222 DIHGGGSDLMFPHHENEIAQSTC-AHDGPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLRHYDAETVRYFLMSGHYRSQLN 303
                  56667888888888888888874.5788********99999999******************************988877665 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0024       7.2      29      73 ..      28      72 ..       5      89 .. 0.86
   2 !   15.3   0.0   2.4e-06    0.0071     274     319 ..     260     304 ..     216     345 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0024
  tRNA-synt_1f 29 sGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmDg 73
                   Gi++  l HiG  r  +  d+v r lr  g +v+ +  + d+D 
    EHU01680.1 28 CGITVYDLCHIGHGRTFVAFDVVSRYLRYVGYDVNYVRNITDIDD 72
                  69999999*************************998888888874 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.4e-06
  tRNA-synt_1f 274 illkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkl 319
                   ++++  ekms+S  n++t++d+l+ +  e++r+++++ + +++++ 
    EHU01680.1 260 VMIDR-EKMSKSLNNFFTVRDVLRHYDAETVRYFLMSGHYRSQLNY 304
                   44554.5***************************999776666555 PP

>> Mut7-C  Mut7-C RNAse domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05     0.054      11      49 ..      49      89 ..      45     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
      Mut7-C 11 klakyLRllGydalyasdv..edeellalaakekrillTrd 49
                 +++yLR +Gyd+ y ++    d++++++a++++  + T  
  EHU01680.1 49 VVSRYLRYVGYDVNYVRNItdIDDKIIKRANENGESIETLT 89
                589***********99977446899*****99988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3011.17
//
Query:       EHU01681.1  [L=164]
Description: peptidyl-prolyl cis-trans isomerase B (rotamase B) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-48  165.2   1.7    1.5e-48  165.0   1.7    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   1.7   8.6e-53   1.5e-48       1     157 [.       1     161 [.       1     162 [. 0.92

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 8.6e-53
  Pro_isomerase   1 lvdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkhkrGalamart 96 
                    +v+++t+ +G+ivi+ f+dkaP tv+nFl++++egfYd+t+FhRvi+gfm+qgG ++ +++   q+ ++    ++i++E ++ lk+++G+lamart
     EHU01681.1   1 MVTFQTN-HGDIVIKTFDDKAPATVKNFLDYCREGFYDNTIFHRVINGFMIQGGGFEPGMK---QKATK----EEIRNEANNGLKNTKGTLAMART 88 
                    689***7.***********************************************877644...22333....379******************** PP

  Pro_isomerase  97 gkepnsagsqFfItlkeaphldg........kytvFGkVveGmdvvekiekvetde.....erpkknvkivsae 157
                     ++p+sa+ qFfI+++++++l+         +y+vF +VveGmdvveki++v+t +     + pk++v i++++
     EHU01681.1  89 -SAPHSATAQFFINVADNDFLNFrdeslqgwGYCVFAEVVEGMDVVEKIKAVSTGRsgmhqDVPKDDVIIQKVT 161
                    .79*******************999**************************99999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1206.85
//
Query:       EHU01682.1  [L=238]
Description: UDP-2,3-diacylglucosamine pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-10   42.0   0.1    1.9e-10   41.6   0.1    1.2  1  Metallophos    Calcineurin-like phosphoesterase
    1.3e-09   38.5   1.5    9.2e-09   35.7   1.5    1.9  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
       0.15   12.3   0.3       0.46   10.8   0.2    1.7  2  Peptidase_S76  Serine peptidase of plant viral polyprotein, P


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   3.2e-14   1.9e-10       2     204 .]       3     197 ..       2     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.2e-14
                  EEEEEESBTB.TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS....HHHHHHHHH.HHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHl.algggqlddllkllddllreekpdlvllaGDlvdrg....dlekellel.laalvkypipvylllGNHegfee.ellnkygylgifs 92 
                  r l+i+DlHl  ++++  + +l +l++    + +d++ ++GDl++      d++  l ++  +al ++p+pv++++GN + f + + + +        
   EHU01682.1   3 RTLFIADLHLcQEEPAITAGFLHFLQRE--APHCDALYILGDLFEAWigddDPNP-LHQQvASALHALPVPVFFIHGNRD-FLIgKRFAR-------- 88 
                  789******7766666666666666443..4679********9999878876666.55552666666699**********.888788888........ PP

                  HHHEHHHCEEETSEEEEEETTE.EEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHH............HHHHTTCSEEEEEESSESSCSSSC CS
  Metallophos  93 epwrsdaevfnnlplaslgsgs.lkvlllhGgspellvsldklgslnleleapepgdewlkd............lekrekadwvivlgHsplyrgsgy 177
                        a+ +  lp  +  + +  ++l++hG+    +  +d++g l+++  +  + + w+++              +r +a  + + +H+ l+     
   EHU01682.1  89 ------ASGMTLLPEEQVLTLYgHRLLIMHGD----TLCTDDAGYLQFRAKV--H-NPWIQRlfltlplfirkrIAARMRANSKQANQHKTLE---IM 170
                  ......77778888888666667899999999....4555555555555554..4.5566666633444444455556666666666666666...66 PP

                  SCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 178 lfgdealedllkkygvdlvisGHtHvy 204
                    +++a+ d   + +v l i+GHtH++
   EHU01682.1 171 DVNQQAVVDAMVRQQVPLLIHGHTHRP 197
                  666666668999999**********85 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   1.5   1.5e-12   9.2e-09       4     134 ..       5     201 ..       3     213 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.5e-12
  Metallophos_2   4 aiiSDlH...snldaleav......lealkevgvdaiihaGDl.....eeeepe.vleellela.....pvlaVrGNnDeevveedvlre..aael 77 
                    ++i+DlH   ++ ++          l++ + + +da++ +GDl     ++ +p+  ++++ + +     pv  ++GN D       ++++   a  
     EHU01682.1   5 LFIADLHlcqEEPAI---TagflhfLQREAPH-CDALYILGDLfeawiGDDDPNpLHQQVASALhalpvPVFFIHGNRD--F---LIGKRfaRASG 91 
                    789****55533333...24444434443334.7********555456666665444445444466789**********..3...33333003445 PP

  Metallophos_2  78 gtdlpeeaelelagekvlliHgdpl.......................................................gvkdalaellkeaeeg 118
                    +t lpee++l+l g ++l++Hgd+l                                                         ++a+ +++ +  ++
     EHU01682.1  92 MTLLPEEQVLTLYGHRLLIMHGDTLctddagylqfrakvhnpwiqrlfltlplfirkriaarmranskqanqhktleimdVNQQAVVDAMVR--QQ 185
                    67789******************99****************************************999998888886664223333333333..46 PP

  Metallophos_2 119 sdvvvcGHtHvpevek 134
                    + ++++GHtH+p + +
     EHU01682.1 186 VPLLIHGHTHRPAIHD 201
                    66**********8765 PP

>> Peptidase_S76  Serine peptidase of plant viral polyprotein, P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   1.9e+03      80     105 ..     112     137 ..      66     144 .. 0.80
   2 ?   10.8   0.2   7.6e-05      0.46      15      70 ..     146     205 ..     134     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
  Peptidase_S76  80 eeddlyeedreflehlaarkvtrkgr 105
                    + d l  +d  +l++ a+    +++r
     EHU01682.1 112 HGDTLCTDDAGYLQFRAKVHNPWIQR 137
                    46889999999999999877777665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.6e-05
  Peptidase_S76  15 ikkr.alkkrkkekkv..vanvtvsDlake.lteicveegiPiiiidkeKrkaiprVklk 70 
                    i+kr a + r + k++  +  +++ D+ ++ +++ +v++ +P+ i +++ r ai  V l+
     EHU01682.1 146 IRKRiAARMRANSKQAnqHKTLEIMDVNQQaVVDAMVRQQVPLLIHGHTHRPAIHDVSLN 205
                    66666778888888887455599***98653899********************888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2049.88
//
Query:       EHU01683.1  [L=169]
Description: N5-carboxyaminoimidazole ribonucleotide mutase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-63  212.5   1.8    2.2e-63  212.3   1.8    1.0  1  AIRC      AIR carboxylase
  ------ inclusion threshold ------
      0.054   14.0   0.2         14    6.3   0.0    2.2  2  MFMR      G-box binding protein MFMR


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.3   1.8   2.4e-67   2.2e-63       2     147 ..      10     157 ..       9     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.3 bits;  conditional E-value: 2.4e-67
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 ++++mGS+sD+++m+ aaeil++l+v+++v+vvSahrtp++l+++ae+a+++g++viIagAGgaahLpg++a++t lPV+gvPv+s al+g+dsl+Siv
  EHU01683.1  10 IAVVMGSKSDWSTMQFAAEILTSLDVPFHVEVVSAHRTPDKLFSFAETAADNGFQVIIAGAGGAAHLPGMLAAKTLLPVLGVPVQSAALSGVDSLYSIV 108
                 89************************************************************************************************* PP

                 T--TTS--EE-SST..HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaig..kaknAallAaqilalkdeelaekleeyreelke 147
                 qmP+g+pv t+aig  +a+nAallAaqila++d++la++l+++r+++++
  EHU01683.1 109 QMPRGIPVGTLAIGkaGAANAALLAAQILAIHDSALASRLAAWRQSQTD 157
                 **************9999**************************99876 PP

>> MFMR  G-box binding protein MFMR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0017        16      27      61 ..      13      47 ..       1      57 [. 0.63
   2 ?    6.3   0.0    0.0016        14      57      97 .]      71     111 ..      53     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0017
        MFMR 27 vavvypdWsalqayygsgvlppgffasavasspap 61
                v+ ++ dWs++q        ++  f+ +v+s++ +
  EHU01683.1 13 VMGSKSDWSTMQFAAEILTSLDVPFHVEVVSAHRT 47
                455689******65433334444556777777764 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0016
        MFMR  57 sspaphPymWgaqplmppygtPvpYaalyppggvyahpsvp 97 
                  + a  P m +a+ l+p  g Pv  aal   +++y+  ++p
  EHU01683.1  71 GGAAHLPGMLAAKTLLPVLGVPVQSAALSGVDSLYSIVQMP 111
                 45566799****************9***9999999977775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1355.08
//
Query:       EHU01684.1  [L=354]
Description: N5-carboxyaminoimidazole ribonucleotide synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-53  179.6   0.0    5.1e-53  179.2   0.0    1.1  1  ATP-grasp  ATP-grasp domain
    2.6e-16   59.1   0.0    5.5e-16   58.0   0.0    1.6  1  PurK_C     Phosphoribosylaminoimidazole carboxylase C-termina


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   0.0   5.7e-57   5.1e-53       2     171 .]      88     254 ..      87     254 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 5.7e-57
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHCGTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqalealkeekvivEefvpfekElsvlvvrsaeGetafypvvetvq 100
                 ++l l++++++++++k e+ +++++lg  ++vK+r++gydG+Gq+ +r  e+     +++  +++ivE+ ++f+ E+s++++r  +G+t+fyp++++++
  EHU01684.1  88 DQLSLATAPWQLLADKGEWPHVFKTLGELAIVKRRTGGYDGRGQWRLRAGETDTLPDDCY--GECIVEQGINFSGEVSLVGARGHDGSTVFYPLTHNLH 184
                 7899***********************************************999999999..************************************* PP

                 ETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp 101 edgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                 e+gilr+sva  ++++++q++ae++++ i++eL++vGv+a+E+Fv+ +g ll+nElapR+HnsGh+t+++a
  EHU01684.1 185 EEGILRTSVAFPQADAAQQQQAEAMLSAILHELNYVGVMAMECFVTPQG-LLINELAPRVHNSGHWTQNGA 254
                 **********************************************555.*****************9985 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   6.1e-20   5.5e-16       1      54 [.     280     329 ..     280     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 6.1e-20
      PurK_C   1 avMvNlLGedaeekleellaipgahlHlYgKeearpgRKmGHitvvgdsaeele 54 
                 +vMvNl+G++   + +++l+ p +hlH+Y K+ +r+gRK+GH++++++++ +l+
  EHU01684.1 280 SVMVNLIGTAL--N-TDWLQQPLVHLHWYDKA-VREGRKVGHLNLTDSDQSRLA 329
                 79*********..4.69***************.***************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2807.63
//
Query:       EHU01685.1  [L=805]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-09   35.6  12.4    1.7e-05   25.2   0.4    5.8  6  FtsX      FtsX-like permease family
     0.0057   17.0   2.2      0.013   15.9   0.0    2.5  2  MacB_PCD  MacB-like periplasmic core domain


Domain annotation for each model (and alignments):
>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.29   2.6e+03      26      36 ..      21      31 ..      10      86 .. 0.68
   2 ?    2.5   0.1     0.023     2e+02      68      93 ..     243     268 ..     223     270 .. 0.75
   3 !   23.2   5.9     8e-09   7.2e-05       4      82 ..     274     352 ..     272     364 .. 0.85
   4 ?   -3.5   7.0       1.7   1.5e+04      40      81 ..     400     471 ..     381     474 .. 0.46
   5 ?   -1.3   0.5      0.36   3.2e+03      29      46 ..     683     700 ..     660     704 .. 0.73
   6 !   25.2   0.4   1.8e-09   1.7e-05       1      93 [.     708     794 ..     708     796 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.29
        FtsX 26 llitlvalviG 36
                +l+ +va+v++
  EHU01685.1 21 ALTLAVACVLA 31
                11111111111 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.023
        FtsX  68 tvliiivlllllallagllsiskilk 93 
                  +l+ ++l l+la++a+++++s+ ++
  EHU01685.1 243 FLLLSALLTLILAIAAVAVAMSHYCR 268
                 45667777778888888888877765 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 8e-09
        FtsX   4 igilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllall 82 
                 +++l++lG++++ + +l+++++l++ l+a+++G ++g ++  +l+++l  ++ +s ++ s+ +  ++i+ ++++ l++ 
  EHU01685.1 274 VAVLKTLGATRGALQRLIIGQWLAVLLLAALAGGAVGQVVEAILMAMLKPVLPASLPAASLWPWVWAIGSLFMISLLVG 352
                 69*************************************************9988888888888888887777776654 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 1.7
        FtsX  40 gllaaqllsdvllssvf..........................s....selkisidlitvliiivlllllal 81 
                 g++++++l +++    +                                +++++++ ++ + + ++ll l+l
  EHU01685.1 400 GSKMLWALLAGVMVLAGllallgwgtllllrrlsvrnlalrlaInrllRQPAMTLSQLAAFSLSFMLLALLL 471
                 555555533333222112222334444444444444444444313445666666666666666666666555 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.36
        FtsX  29 tlvalviGlglgllaaql 46 
                 ++v lv ++g++ll+aq+
  EHU01685.1 683 IMVVLVTACGVLLLMAQI 700
                 566777778888777775 PP

  == domain 6  score: 25.2 bits;  conditional E-value: 1.8e-09
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilk 93 
                 ++e+ ++r+lG+ k+ ++  l+ e +li++v+ +++ + + +a+++l+ ++      +  +++ d+  +l++ + + ll++l g +   ++lk
  EHU01685.1 708 RQELVVYRTLGAGKRLLRTTLWCEFALIGVVSGIAAALGAEAALWALQRKI------FDFPWQPDWTLWLALPLGGALLLSLCGGWLGVRLLK 794
                 6899********************************999999*9**99998......778999999999999999999999998888777766 PP

>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06     0.013       3     169 ..      17     180 ..      15     216 .. 0.67
   2 ?   -3.5   2.8       1.2   1.1e+04       4      20 ..     248     264 ..     245     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
    MacB_PCD   3 ltvLGiaiGvaaviaivslgeglqasvlsqisdl...gnlvtvtpgkgsgeslsdpdvealrrevp.veavapvv...tvrgggsgeeevtvvgvdpdy 94 
                 +  L+++++va+v a++s+ + + + +++q +d    +   t++ ++       +p + + +++ +   +v++++   t +++g++ + + v +v+ +y
  EHU01685.1  17 IVWLALTLAVACVLALGSISDRMEKGLSQQSRDFmagD--RTLRSST------AAPAAWL-DKAREtGLSVSRQLsfmTMTFAGQTPQLAAVKAVENTY 106
                 55699*************************99888633..4565553......2232222.22223366788887666445555443446788888555 PP

    MacB_PCD  95 fkvfglklaeGrffteadlrggpnvvvigeelaerlf.pvGdtirl..kpftVvGvled.ppgsgsalg.ddavylpltt 169
                 +    lk       ++  l+ +p+ ++   +l   l   vGd++ +   +++++G + + p+g++  +  +++++++l++
  EHU01685.1 107 PMFGELK-T-----QPPGLKPQPGTALAAPRLMAMLNlHVGDELDVgdTTLRITGEIIQePDGGFNPFEmAPRLLINLAD 180
                 5544442.1.....2222334677677666666665588********999*****9755244544333356777776555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
    MacB_PCD   4 tvLGiaiGvaaviaivs 20 
                 ++L++++++aav + +s
  EHU01685.1 248 ALLTLILAIAAVAVAMS 264
                 7899********98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5360.33
//
Query:       EHU01686.1  [L=207]
Description: acyl-CoA thioesterase I/protease I/lysophospholipase L1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-26   91.4   0.0    1.1e-25   91.1   0.0    1.1  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.5e-14   54.5   0.0    1.7e-14   54.3   0.0    1.1  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
    0.00012   22.3   0.0    0.00032   20.9   0.0    1.6  1  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.075   12.9   0.0    1.6  1  DUF3263        Protein of unknown function (DUF3263)
      0.089   12.0   0.0       0.12   11.6   0.0    1.1  1  OSK            OSK domain


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   3.1e-29   1.1e-25       1     175 [.      33     188 ..      33     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 3.1e-29
                    EEESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H..HHHHHHHH.CTGGG-TSEEEEE--CCCCCTT--HHHHHHH..HHHHHH CS
  Lipase_GDSL_2   1 alGDSiTaGygadgggrsypaylarllaarlgldvvnnlgvsGattallrllerlr.dllrlkpdlvtiliGtNDlgrgvpaaaaaandnleelid 95 
                    +lGDS++aGy   ++ +++p++l ++++++   +vvn +++sG+t   ++ l rl+  l +l+p++v+i +G+ND +rg +++++a+   l ++id
     EHU01686.1  33 VLGDSLSAGYQM-SASQAWPSLLNKQWQQQP--SVVN-ASISGDTA--AQGLARLPaLLKQLQPQWVLIELGGNDGLRGFSPKDVAQT--LGTIID 120
                    69*******987.999999999999999999..7888.*******9..888899998999***************************9..****** PP

                    HHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS.SSB-HH CS
  Lipase_GDSL_2  96 alraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlladdglHPnaa 175
                    +++aa        + p+ ++ + +a+    +++++a+++++ ++a+++++++v++   + ++ + +++++  dg+HPn++
     EHU01686.1 121 QVKAA-------KAKPILMQIRLPANY--GRRYTDAFRDIYPQLAKQYDIALVPF---FMEQVYLKPEWMQQDGIHPNPD 188
                    *****.......455555555555444..458999********************...7777788888889999****97 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   4.7e-18   1.7e-14       2     199 ..      32     196 ..      31     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 4.7e-18
                  EEEESHHHHTTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC-EECSSCTTTCEEHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDsnlgkkstdaakkeaeey 99 
                  +++GDSl++G+    + ++    +k ++ +     ++ n+++ g+   +   +l         lk+l+p++v+i+lG+ND           + ++ ++
   EHU01686.1  32 LVLGDSLSAGYQMSASQAWPSLLNKQWQQQ----PSVVNASISGDTAAQGLARL------PALLKQLQPQWVLIELGGNDG--------LRGFSPKDV 111
                  78*********8888888888888888876....47777777777777777777......88999****************........********* PP

                  HHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCHTSSSB-HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 100 iknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlkaDglHpsekgyekla 197
                   + l   i+++k   a ka+ +l+ +  +++            g++  + + +++ +la++ ++a+v+++ e   l+  + ++ Dg+Hp++ ++  +a
   EHU01686.1 112 AQTLGTIIDQVK---AAKAKPILMQIRLPAN-----------YGRRYTDAFRDIYPQLAKQYDIALVPFFMEQVYLKPEWMQQ-DGIHPNPDAQPFIA 194
                  ************...5556666776666666...........566889999999999************99999997777766.**********9999 PP

                  HH CS
                  xx RF
  Lipase_GDSL 198 el 199
                  +l
   EHU01686.1 195 DL 196
                  86 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   8.8e-08   0.00032       5     103 ..      32     137 ..      29     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8.8e-08
  Lipase_GDSL_3   5 vvYGsSitqGasasRpglaytailsrklgre..vvnLgfsGnalle..aeladvlaevdasvfvldllpN.....asaeeirerleyfvktlrkah 91 
                    +v G S++ G   s +  a++  l+++ +++  vvn ++sG +  +  a l ++l +++++  +++l  N     +s++ + + l ++++++++a+
     EHU01686.1  32 LVLGDSLSAGYQMS-ASQAWPSLLNKQWQQQpsVVNASISGDTAAQglARLPALLKQLQPQWVLIELGGNdglrgFSPKDVAQTLGTIIDQVKAAK 126
                    67788999998776.5689*******9987555********98877557999******************************************** PP

  Lipase_GDSL_3  92 Pktpillvedls 103
                     ++pil++  l 
     EHU01686.1 127 -AKPILMQIRLP 137
                    .9***9986433 PP

>> DUF3263  Protein of unknown function (DUF3263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.075      32      60 ..     105     133 ..     103     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
     DUF3263  32 glsptrYyqlLnaLiddpeAlaadPvlvk 60 
                 g+sp    q L+++id+ +A++a+P+l++
  EHU01686.1 105 GFSPKDVAQTLGTIIDQVKAAKAKPILMQ 133
                 7899999*******************986 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05      0.12      50     123 ..      67     142 ..      52     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                 EEETT--HHHHHHHHHT-.---T.-EEEEE--HHHHHTT--HHHHHHHHHHHHHHHHHTT-EEEEE-----GGGTT CS
         OSK  50 lciSGlTiseaakrleki.elis.srvvvnlGsvDilngktlvelehDlteLlkelrernvaiilttlaPlaNlsa 123
                   iSG T ++   rl  + + ++ + v+++lG  D l+g +  ++++ l +++ +++  ++++il  +   aN++ 
  EHU01686.1  67 ASISGDTAAQGLARLPALlKQLQpQWVLIELGGNDGLRGFSPKDVAQTLGTIIDQVKAAKAKPILMQIRLPANYGR 142
                 579************87525556688****************************************9998899873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1628.87
//
Query:       EHU01687.1  [L=257]
Description: putative NAD(P)-binding oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-40  139.2   0.0    1.3e-40  139.0   0.0    1.0  1  adh_short        short chain dehydrogenase
    1.5e-29  103.2   0.0    1.9e-29  102.9   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.8e-11   42.6   0.0    8.7e-11   42.1   0.0    1.3  1  KR               KR domain
    3.6e-05   23.7   0.0      6e-05   23.0   0.0    1.4  1  NAD_binding_10   NAD(P)H-binding
    0.00017   21.1   0.0    0.00042   19.8   0.0    1.6  2  DUF1776          Fungal family of unknown function (DUF1776)
    0.00023   20.7   0.1     0.0029   17.1   0.0    2.2  2  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.14   11.9   0.1       0.29   10.9   0.1    1.5  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.19   11.3   0.0       0.28   10.7   0.0    1.2  1  NmrA             NmrA-like family
       0.23   10.8   0.0       0.58    9.5   0.0    1.6  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.0   6.3e-44   1.3e-40       1     194 [.       3     191 ..       3     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 6.3e-44
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfselse 98 
                 k++l+tG+ssGIG+  ak l+++G++v+++ r+++ + + +++l+     ++ +q+D+ d ++v+++ +++ + + g+l +L nNAG    gp + l+ 
  EHU01687.1   3 KTILITGCSSGIGLVAAKDLLARGYHVIAACRKADYV-ARMDSLG-----FTGLQLDLDDPDSVDRAADRVLALThGRLFALFNNAGFGTYGPLNTLTR 95 
                 79***************************77776644.6666677.....99********************9988*********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 ++ e+ ++ N++g+ +lt  +lpa+++  ++rI+n+sSv g  + +g  aY+AsK a+++++++l++el+++g+rv+ + PG++ T ++ ++++ e
  EHU01687.1  96 QQLEKQFSSNVFGTHQLTLRLLPALKAWGNARIINTSSVLGIISTPGRGAYAASKYALEAWSDALRMELHTSGVRVSLIEPGPIHTRFTDNVTQGE 191
                 ****************************************************************************************99998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   9.6e-33   1.9e-29       1     186 [.       9     191 ..       9     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 9.6e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreefd 96 
                   G  sgIG  +Ak l ++G++v+++ ++ +    v+++  +lg + l++D  d+++v++++++v + + g+l  l+nnag+ +   gp+ +++r++++
    EHU01687.1   9 GCSSGIGLVAAKDLLARGYHVIAACRKADY---VARMD-SLGFTGLQLDLDDPDSVDRAADRVLALThGRLFALFNNAGFGTY--GPLNTLTRQQLE 99 
                   6789*********************99998...77765.589999******************99877***************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   + ++ n+ ++++l+ ++lp++k++  ++i+n+ssv + +++p+  ay+a+K alea + +l +el   g+Rv  + pgpi+T+ ++++++ +
    EHU01687.1 100 KQFSSNVFGTHQLTLRLLPALKAWgnARIINTSSVLGIISTPGRGAYAASKYALEAWSDALRMELHTSGVRVSLIEPGPIHTRFTDNVTQGE 191
                   *******************999886789********************************************************99998644 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   4.4e-14   8.7e-11       2     164 ..       4     161 ..       3     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 4.4e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdkllee 99 
                 t litG+  g+Gl+ a+ l+++g + ++   R+       ++ +a++ +lg   + +++D+ d+d+v ++ +++ a + +++   ++ Ag+   ++l++
  EHU01687.1   4 TILITGCSSGIGLVAAKDLLARGYH-VIAACRK-------ADYVARMDSLGF--TGLQLDLDDPDSVDRAADRVLALThGRLFALFNNAGFGTYGPLNT 92 
                 679********************75.5556677.......246666777665..57889999************99998******************** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 +t ++le+ +++ v G+++L   l +         ++ +SS+ g++ ++g+++Yaa    l+a+ +  r
  EHU01687.1  93 LTRQQLEKQFSSNVFGTHQLTLRLLPalkaWGNARIINTSSVLGIISTPGRGAYAASKYALEAWSDALR 161
                 ******************99865544343334456899******************9988877765543 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     3e-08     6e-05       3     161 ..      11     194 ..       9     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3e-08
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE....EES-......--TCC........HHHH.. CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaV....vsal......ggggk........deeg.. 77 
                     + ++G  ++k llarg ++v a  R+++ +a++ ++ g + +++d+ d++++ +a + + a     ++al      g   +        +  +  
      EHU01687.1  11 SSGIGLVAAKDLLARG-YHVIAACRKADYVARM-DSLGFTGLQLDLDDPDSVDRAADRVLALthgrLFALfnnagfG---TygplntltR--Qql 98 
                     6789***********5.**************98.589******************8866554222233335553431...2455555431..134 PP

                     ..............HHHHHHHHHHCT--EEEEEEE.TTTTSGCGCHHHHHHHHCCHHHHHH.HHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEE CS
  NAD_binding_10  78 ..............aknivdaakeagvkRfvlvsa.igvgdevpgefgewnkellkaylaa.kraaeellrasgldwTivrpggLtdepttkyrv 156
                                   + +++ a+k+ g  R++  s+ +g+  ++pg   + ++ + k++l+a   a   +l +sg+    + pg +    t ++  
      EHU01687.1  99 ekqfssnvfgthqlTLRLLPALKAWGNARIINTSSvLGII-STPG---RGAYAASKYALEAwSDALRMELHTSGVRVSLIEPGPIHTRFTDNVTQ 189
                     5566777777777799999999999999999998845666.3444...34444555666541445555688899988888888776665555555 PP

                     EETTS CS
  NAD_binding_10 157 vekge 161
                     +e+++
      EHU01687.1 190 GEQDN 194
                     55555 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.1e-07   0.00042     103     201 ..      84     180 ..      77     201 .. 0.89
   2 ?   -2.4   0.0       1.2   2.4e+03     277     295 ..     232     250 ..     215     251 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.1e-07
     DUF1776 103 y.ptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnl 200
                 + ++gp++t++ +++++++ ++++ + +++ +llp l++    +a+ii  + s++  ++ p  +  a    al+a   +L+ el   ++ v+ i  G +
  EHU01687.1  84 FgTYGPLNTLTRQQLEKQFSSNVFGTHQLTLRLLPALKA--WGNARII-NTSSVLGIISTPGRGAYAASKYALEAWSDALRMELHTSGVRVSLIEPGPI 179
                 6689**********************************9..5677776.6789********************************99999999988776 PP

     DUF1776 201 d 201
                 +
  EHU01687.1 180 H 180
                 5 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
     DUF1776 277 Gkgarlyslvgkllpeglv 295
                  + a ++sl+++llp +++
  EHU01687.1 232 TLVAHIMSLLKRLLPGWIL 250
                 4456777777777777766 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0029       1      62 [.       5      66 ..       5      78 .. 0.88
   2 ?    1.2   0.0       0.1   2.1e+02     137     160 ..     141     164 ..     109     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfke 62
                il+tG +  iG   +k ll++gy+vi+  r+ +  ++      +  +ldl d+++++r+ ++
  EHU01687.1  5 ILITGCSSGIGLVAAKDLLARGYHVIAACRKADYVARMDSLGFTGLQLDLDDPDSVDRAADR 66
                89*****************************777666655555***************9885 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.1
                 --SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase 137 kpnspYaaaKlageklveayaaqy 160
                 + + +Yaa+K+a e    a++ + 
  EHU01687.1 141 PGRGAYAASKYALEAWSDALRMEL 164
                 557789999999998888777665 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014      0.29      40      56 ..       2      18 ..       1      31 [. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                     -SEEEEESTSSHHHHHH CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAs 56
                      k++L+ G+S+G GL +
       EHU01687.1  2 QKTILITGCSSGIGLVA 18
                     589***********954 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.28       1      65 [.       5      67 ..       5      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgv 65
                Il++G +  +G   ++ ll++g++v a  R+   + ++ + + G + ++ dldd +s+++a + v
  EHU01687.1  5 ILITGCSSGIGLVAAKDLLARGYHVIAACRK--ADYVARMDSLGFTGLQLDLDDPDSVDRAADRV 67
                8999999999*99*****************6..578899********************998876 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00029      0.58       1      70 [.       6      63 ..       6      69 .. 0.80
   2 ?   -2.5   0.0       1.3   2.6e+03     106     129 ..     113     133 ..      97     134 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00029
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerl 70
                   LiTG +  iG   a+ Ll++gy+v+  +r+++  +++r+++l           ++  + Dl D +s++r+
     EHU01687.1  6 LITGCSSGIGLVAAKDLLARGYHVIAACRKAD--YVARMDSLG----------FTGLQLDLDDPDSVDRA 63
                   8***********************98887655..678999885..........45567777777777766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                    HHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd 106 tlrLLeairalglekkvrfyqaSt 129
                    tlrLL a +a g   ++r++ +S+
     EHU01687.1 113 TLRLLPALKAWG---NARIINTSS 133
                    456677776655...578888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1865.21
//
Query:       EHU01688.1  [L=285]
Description: putative thioredoxin domain-containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-29  101.6  12.0    3.2e-29  101.1   4.5    3.2  3  TPR_20          Tetratricopeptide repeat
    1.9e-19   69.6   0.0    3.4e-19   68.7   0.0    1.5  1  Thioredoxin     Thioredoxin
    2.2e-18   66.5  14.3    5.9e-18   65.1   0.3    3.8  3  TPR_19          Tetratricopeptide repeat
    3.9e-06   27.0   0.1    4.6e-05   23.6   0.0    2.3  2  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
      2e-05   24.1   0.0    2.7e-05   23.7   0.0    1.2  1  OST3_OST6       OST3 / OST6 family, transporter family
    4.1e-05   23.5   0.0     0.0001   22.2   0.0    1.6  1  TraF            F plasmid transfer operon protein
    7.2e-05   23.0   0.0     0.0052   17.1   0.0    2.6  2  Thioredoxin_8   Thioredoxin-like
    0.00029   20.8   0.0    0.00058   19.8   0.0    1.5  1  Thioredoxin_6   Thioredoxin-like domain
    0.00065   20.3  12.3       0.82   10.7   0.3    5.9  6  TPR_14          Tetratricopeptide repeat
     0.0024   18.3   0.0      0.006   17.0   0.0    1.7  1  Thioredoxin_2   Thioredoxin-like domain
     0.0028   18.2   2.1       0.94   10.2   0.0    3.9  4  TPR_16          Tetratricopeptide repeat
     0.0095   15.4   0.6      0.014   14.9   0.6    1.3  1  SPO22           Meiosis protein SPO22/ZIP4 like
  ------ inclusion threshold ------
      0.014   15.7   0.0        1.1    9.8   0.0    2.8  2  TPR_17          Tetratricopeptide repeat
      0.018   15.3   2.1       0.84    9.9   0.1    2.8  2  Vps39_1         Vacuolar sorting protein 39 domain 1
      0.022   13.8   0.4      0.031   13.3   0.4    1.3  1  ChAPs           ChAPs (Chs5p-Arf1p-binding proteins)
      0.034   14.5   0.7       0.07   13.5   0.7    1.6  1  Syntaxin_2      Syntaxin-like protein
      0.049   13.8   0.1       0.29   11.3   0.0    2.2  2  Thioredoxin_7   Thioredoxin-like
      0.062   13.4   0.4        0.5   10.5   0.0    2.4  3  Acetyltransf_6  Acetyltransferase (GNAT) domain
      0.096   13.1   5.8        1.1    9.6   1.0    2.7  2  BTAD            Bacterial transcriptional activator domain
       0.12   12.5   0.0       0.27   11.3   0.0    1.6  1  SRP_TPR_like    Putative TPR-like repeat
       0.15   11.4   0.0       0.36   10.1   0.0    1.5  2  Pkinase         Protein kinase domain
       0.61   10.9   0.0       0.61   10.9   0.0    4.3  4  TPR_4           Tetratricopeptide repeat
          6    6.9   7.5         46    4.1   0.1    4.5  6  TPR_10          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.6      0.19   1.5e+02      19      47 ..     112     140 ..      95     150 .. 0.77
   2 ?    1.3   0.0      0.56   4.3e+02      12      45 ..     139     172 ..     135     186 .. 0.81
   3 !  101.1   4.5   4.1e-32   3.2e-29       1      90 []     196     285 .]     196     285 .] 0.99

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.19
      TPR_20  19 pddldarldlAlallaagryeeAleqLle 47 
                 p + +++ + A al+++g+  +Al +L +
  EHU01688.1 112 PREEELKAQQAMALMQEGKPLDALPLLKD 140
                 77788999999999****99999988865 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.56
      TPR_20  12 eaalaanpddldarldlAlallaagryeeAleqL 45 
                 ++a + + +d ++ + lA++l+  +r +eA + L
  EHU01688.1 139 KDAWQLSNKDSEIGFLLAEVLITLNRSDEAETVL 172
                 66677788999************99999996655 PP

  == domain 3  score: 101.1 bits;  conditional E-value: 4.1e-32
      TPR_20   1 qaadapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLsslLf 90 
                 qaad+pe+++l+++l+++pd+ +++ +l+l+l++ gr+eeAle+L++++krd++++d++ark l +i++alg++d+l+a+yRr+L+slL+
  EHU01688.1 196 QAADTPEIQQLQSQLESDPDNAELATKLSLQLHQVGRNEEALELLFSFIKRDLNAADGQARKMLQEILAALGTGDALAARYRRQLYSLLY 285
                 79***************************************************************************************9 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   4.4e-22   3.4e-19       3     102 ..       8     108 ..       6     109 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 4.4e-22
                  EESSHHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin   3 lvltkenFeeevak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  + ++++n ++++++  + +vl  F+++   hC++l+P le+la+e+++++ la++d+d+++ +a++++ ++iPt++lf+ng+ v+ ++g +++e+++a
   EHU01688.1   8 IDINESNLHQTLEQsMQIPVLFYFWSDRSQHCQELTPLLERLAQEYAGQFILARLDCDKEQRVASQFGLRSIPTVYLFQNGQPVDGFQGPQPEEAVRA 105
                  5678899999999956779*************************************************************************999988 PP

                  HHH CS
  Thioredoxin 100 flk 102
                   l+
   EHU01688.1 106 LLE 108
                  776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.3   7.6e-21   5.9e-18       1      68 []     125     191 ..     125     191 .. 0.99
   2 !    8.1   1.0     0.005       3.9      11      48 ..     203     240 ..     193     252 .. 0.84
   3 ?    0.7   0.2      0.98   7.7e+02      43      57 ..     254     268 ..     251     280 .. 0.58

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 7.6e-21
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 l++eg++ +Al+ll+ a+q ++k++e+  lLAe+l+ l++ deAe +L+a+p++d+d  ry+sL A++
  EHU01688.1 125 LMQEGKPLDALPLLKDAWQLSNKDSEIGFLLAEVLITLNRSDEAETVLKAVPLQDQD-TRYQSLVAQI 191
                 79*******************************************************.********97 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.005
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealL 48 
                 ++ l++ l+ dp+nae++  L   l + g+ +eA +lL
  EHU01688.1 203 IQQLQSQLESDPDNAELATKLSLQLHQVGRNEEALELL 240
                 5667777999*********999999999********99 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.98
      TPR_19  43 eAealLdalpeedpd 57 
                 +A+++L++++++   
  EHU01688.1 254 QARKMLQEILAALGT 268
                 566666666655444 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.9e-08   4.6e-05      13      81 ..     108     174 ..     101     175 .. 0.87
   2 ?    0.7   0.0       0.8   6.2e+02      53      80 ..     211     241 ..     202     243 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.9e-08
                 HHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  13 erllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 e++l   ++ +e     A +l + g+   A+ ll++a +l +k+ ++ +l+A++l+ L++ +eA+++L++
  EHU01688.1 108 EKVL---PREEELKAQQAMALMQEGKPLDALPLLKDAwQLSNKDSEIGFLLAEVLITLNRSDEAETVLKA 174
                 5555...5555555567999*****************9******************************86 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.8
                 HC-HHHHHHHHHHHHHT...T-HHHHHHHH- CS
      ANAPC3  53 skslgcrylfAqcllkL...kkyeeAiaaLe 80 
                 ++++  + l+ + +l+L   ++ eeA+ +L+
  EHU01688.1 211 ESDPDNAELATKLSLQLhqvGRNEEALELLF 241
                 5555666677777777655688899999887 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.5e-08   2.7e-05      12     108 ..       6      90 ..       1     125 [. 0.80

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.5e-08
   OST3_OST6  12 gviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgp 108
                 ++i++n++n+++ l+++ +  v+ ++ +  +    + C+e+ p +e +a+ +  +        + a++d d+ + v +++gl+s+P ++lf+  ++p
  EHU01688.1   6 SIIDINESNLHQTLEQSMQIPVLFYFWSDRS----QHCQELTPLLERLAQEYAGQ-------FILARLDCDKEQRVASQFGLRSIPTVYLFQN-GQP 90 
                 79************86666666666666644....66***************999.......89***************************98.333 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-07    0.0001     117     202 ..      12      88 ..       5      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.3e-07
        TraF 117 keekeaalkklakeygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpk 202
                 + +  ++l++  +   L++F + +++ c+++ p l+++a++y  + +   +d    +++++         ++g++++P+++l++  
  EHU01688.1  12 ESNLHQTLEQSMQIPVLFYFWSDRSQHCQELTPLLERLAQEYAGQFILARLDCDKEQRVAS---------QFGLRSIPTVYLFQNG 88 
                 5666788999999999**************************8888887777776666777.........************9976 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.6e-06    0.0052       4      44 ..      27      65 ..      25      70 .. 0.82
   2 ?    4.4   0.0      0.06        46      67      91 ..      63      87 ..      54      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.6e-06
                   EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-S CS
  Thioredoxin_8  4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsld 44
                   vl+yf+++ +++c++ tp l +l +++    ++ +  + +d
     EHU01688.1 27 VLFYFWSDRSQHCQELTPLLERLAQEYA--GQFILARLDCD 65
                   89***********************998..66655555555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.06
                   -TT-HHHHTT-S--TT-SEEEEE-T CS
  Thioredoxin_8 67 ddkkrnklkkkynvkaiPtlvvldk 91
                   d +k + +++++++ +iPt+++ ++
     EHU01688.1 63 DCDKEQRVASQFGLRSIPTVYLFQN 87
                   44678999************99875 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.5e-07   0.00058      82     159 ..      10      86 ..       4     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.5e-07
                    -SHHHHHHHHTSS--EEEEEEE-TT.STTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEE CS
  Thioredoxin_6  82 ltpenaeelfeeglppllllflkkd.deeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivd 159
                    +++ n+++  e+ +++ +l+ + +d ++  ++l   +e++a+e+ ++++ a +d+++ +r+ +++gl+  ++P++ +++
     EHU01688.1  10 INESNLHQTLEQSMQIPVLFYFWSDrSQHCQELTPLLERLAQEYAGQFILARLDCDKEQRVASQFGLR--SIPTVYLFQ 86 
                    7888889888888876666665555255568888889*******************************..999988776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       2.1   1.6e+03      14      24 ..      96     106 ..      94     117 .. 0.72
   2 !   10.7   0.3    0.0011      0.82       3      43 ..     117     157 ..     115     158 .. 0.91
   3 !    8.6   0.0    0.0049       3.8       6      27 ..     154     175 ..     149     195 .. 0.84
   4 ?    3.1   0.1      0.27   2.1e+02      21      41 ..     203     223 ..     187     227 .. 0.83
   5 ?    1.3   0.2       1.1   8.2e+02       6      30 ..     222     246 ..     217     259 .. 0.69
   6 ?    3.2   0.4      0.25     2e+02      19      38 ..     254     274 ..     247     280 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2.1
      TPR_14  14 lGdpdeAiall 24 
                   +p+eA+++l
  EHU01688.1  96 GPQPEEAVRAL 106
                 46889998865 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0011
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + ++ a al++ G+p +A+ ll++a +l  +d e+ +lla+
  EHU01688.1 117 LKAQQAMALMQEGKPLDALPLLKDAWQLSNKDSEIGFLLAE 157
                 6688999*************************999999987 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0049
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                 +lae+l +l + deA+++l+++
  EHU01688.1 154 LLAEVLITLNRSDEAETVLKAV 175
                 69******************98 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.27
      TPR_14  21 iallrralalaPddaeawlll 41 
                 i+ l+  l+ +Pd+ae+ + l
  EHU01688.1 203 IQQLQSQLESDPDNAELATKL 223
                 6789999*******9988766 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 1.1
      TPR_14   6 alaeallalGdpdeAiallrralal 30 
                 +l   l + G+ +eA++ll   +++
  EHU01688.1 222 KLSLQLHQVGRNEEALELLFSFIKR 246
                 5666788899******999666665 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.25
      TPR_14  19 eAiallrralal.aPddaeaw 38 
                 +A+++l+++la+ + +da a 
  EHU01688.1 254 QARKMLQEILAAlGTGDALAA 274
                 689999999886244454433 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.7e-06     0.006       7     109 .]      26     107 ..      20     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.7e-06
  Thioredoxin_2   7 pvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyvp 101
                    pvl++f+++ +  C+ l   l+ l   +++        + +++ ++++c+ke+            +a ++g+r+ Pt+  f +g+ +v+  +G  p
     EHU01688.1  26 PVLFYFWSDRSQHCQELTPLLERL--AQEY--------AGQFILARLDCDKEQR-----------VASQFGLRSIPTVYlFQNGQ-PVDGFQGPQP 99 
                    899999999999999999988888..4444........4569999999999997...........9***********77477777.999******9 PP

  Thioredoxin_2 102 aeeleall 109
                    +e  +all
     EHU01688.1 100 EEAVRALL 107
                    99998886 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.7   6.8e+03      49      59 ..      98     109 ..      94     113 .. 0.59
   2 !   10.2   0.0    0.0012      0.94       2      59 ..     120     174 ..     119     182 .. 0.87
   3 ?    4.1   0.0     0.097        75      24      56 ..     210     239 ..     201     244 .. 0.82
   4 ?    0.2   0.3       1.6   1.2e+03      15      38 ..     254     276 ..     253     280 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.7
      TPR_16  49 rlaeAa.alyra 59 
                   +eA+ al+++
  EHU01688.1  98 QPEEAVrALLEK 109
                 556666666665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0012
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 ++a+a+++ g++ dA+++l+ a  +      + e  +ll++++  ++r +eA+ +++a
  EHU01688.1 120 QQAMALMQEGKPLDALPLLKDAWQLS---NKDSEIGFLLAEVLITLNRSDEAETVLKA 174
                 69*****************9998888...66777******************987766 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.097
      TPR_16  24 lkrdpssPdaaeAllllgdaalrqgrlaeAaal 56 
                 l    s+Pd+ae +  l + + + gr +eA++l
  EHU01688.1 210 L---ESDPDNAELATKLSLQLHQVGRNEEALEL 239
                 3...455***********************955 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.6
      TPR_16  15 dAaaaleaalkrdpssPdaaeAll 38 
                 +A+++l++ l++  ++ da +A++
  EHU01688.1 254 QARKMLQEILAAL-GTGDALAARY 276
                 6888886666666.3344555555 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.6   1.9e-05     0.014      85     188 ..     150     264 ..     115     276 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
       SPO22  85 svlrllarayleldqeesyekalkavellqkeygkkehpsllllklkill...............kreadeeeieealeemidsvelseanfklilsli 168
                  +  lla +++ l+ +++ e +lkav l + +++   + + l+ ++++l+                ++ d+ e++  l+  +++v+ +e++++l++s i
  EHU01688.1 150 EIGFLLAEVLITLNRSDEAETVLKAVPLQD-QDT---RYQSLVAQIDLLKqaadtpeiqqlqsqlESDPDNAELATKLSLQLHQVGRNEEALELLFSFI 244
                 56668999***8888888888888888776.444...88889999999999************************************************ PP

       SPO22 169 krlaeksaalavrvldylld 188
                 kr  ++ +  a ++l+++l 
  EHU01688.1 245 KRDLNAADGQARKMLQEILA 264
                 ****************9997 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.24   1.9e+02      17      33 ..     153     169 ..     143     170 .. 0.86
   2 ?    9.8   0.0    0.0014       1.1       6      34 .]     210     238 ..     210     238 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.24
      TPR_17  17 nnLAelllknGdlmtAr 33 
                 ++LAe+l  ++++++A+
  EHU01688.1 153 FLLAEVLITLNRSDEAE 169
                 89*************97 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0014
      TPR_17   6 leldPnnadaynnLAelllknGdlmtArq 34 
                 le dP+na++ + L   l++ G+ ++A++
  EHU01688.1 210 LESDPDNAELATKLSLQLHQVGRNEEALE 238
                 799**********************9975 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0011      0.84      31      68 ..      14      52 ..       9      73 .. 0.85
   2 ?    3.6   0.4     0.099        77      45      80 ..     223     258 ..     192     268 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
     Vps39_1 31 dveeiLkkekkykeLidlYygkklheeALe.Llkelade 68
                + +++L+++ ++  L+ ++  +++h + L+ Ll++la+e
  EHU01688.1 14 NLHQTLEQSMQIPVLFYFWSDRSQHCQELTpLLERLAQE 52
                56899*********************9997699999986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.099
     Vps39_1  45 LidlYygkklheeALeLlkeladedeedeedsslkg 80 
                 L    ++ +  eeALeLl  ++++d + ++++ +k 
  EHU01688.1 223 LSLQLHQVGRNEEALELLFSFIKRDLNAADGQARKM 258
                 555567778999*********997555555554444 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   3.9e-05     0.031     220     307 ..     103     188 ..      98     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.9e-05
                 HHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----SS-------- CS
       ChAPs 220 vkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLNscPmftykekdvlrr 307
                 v+ l e++   +++ el   qa  l+++ k   Al + k a +++  +++  +lL++v i+l+  ++A + L ++P++    +++   
  EHU01688.1 103 VRALLEKV--LPREEELKAQQAMALMQEGKPLDALPLLKDAWQLSNKDSEIGFLLAEVLITLNRSDEAETVLKAVPLQDQDTRYQSLV 188
                 55444444..46677888999999*******9**********************************************9999998644 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7     9e-05      0.07      12      76 ..     200     264 ..     184     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9e-05
  Syntaxin_2  12 vstleklvkqLgtkkdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLk 76 
                 + ++++l++qL+++ d+ el  kl    +++ +  ++ + l++ ++++ n  +++++k+ +e L+
  EHU01688.1 200 TPEIQQLQSQLESDPDNAELATKLSLQLHQVGRNEEALELLFSFIKRDLNAADGQARKMLQEILA 264
                 5689**************************************************99999999986 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038      0.29      16      81 ..      23      85 ..      12      87 .. 0.85
   2 ?   -1.0   0.0       2.7   2.1e+03      26      53 ..     197     223 ..     193     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
                   HT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7 16 rgkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafl 81
                    ++pvl +f ++ + +Cq l   ++     ++ +a++f+l r+d + +++   ++  + +P+v ++
     EHU01688.1 23 MQIPVLFYFWSDRSQHCQELTPLLERL--AQE-YAGQFILARLDCDKEQRVASQFGLRSIPTVYLF 85
                   57899999***********99887665..888.************999986667777889999877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.7
                    -TT-HHHHHHHHHHHH-HHHHH.HHHT- CS
  Thioredoxin_7  26 aswcftCqalerdflsdeevkaalaekf 53 
                    a++ ++ q l+ +++sd+++++ la k 
     EHU01688.1 197 AADTPEIQQLQSQLESDPDNAE-LATKL 223
                    6666666888999999999988.66654 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00064       0.5      57     101 ..      41      88 ..      32      92 .. 0.80
   2 ?   -0.9   0.0       2.1   1.6e+03      50      68 ..      95     113 ..      86     139 .. 0.55
   3 ?   -1.1   0.1       2.4   1.9e+03      39      70 ..     245     271 ..     209     281 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00064
  Acetyltransf_6  57 flrdllaalaargalrlyvlrld...grpvAvalglrsgdrlyywlgg 101
                      l+ ll++la++ a+++  +rld   ++ vA+++glrs  ++y+++ g
      EHU01688.1  41 ELTPLLERLAQEYAGQFILARLDcdkEQRVASQFGLRSIPTVYLFQNG 88 
                     4566788888877777777777555699***************99876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.1
  Acetyltransf_6  50 adpltraflrdllaalaar 68 
                     + p +++ +r+ll+   +r
      EHU01688.1  95 QGPQPEEAVRALLEKVLPR 113
                     4455555555554443332 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.4
  Acetyltransf_6  39 raqwarrpdvfadpltraflrdllaalaarga 70 
                      +  ++  d       r++l+++laal  ++a
      EHU01688.1 245 KRDLNAA-D----GQARKMLQEILAALGTGDA 271
                     3333333.3....3446666666666655554 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.036        28      91     126 ..     110     145 ..      96     152 .. 0.84
   2 ?    9.6   1.0    0.0015       1.1      57     117 ..     177     238 ..     156     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.036
                 HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
        BTAD  91 ehPlrErlhrqlmrAlarsGrqaeALevYerlrrlL 126
                   P  E+l +q   Al++ G+  +AL   +++++l 
  EHU01688.1 110 VLPREEELKAQQAMALMQEGKPLDALPLLKDAWQLS 145
                 5799**********************9999999876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHHHHHTT-HH.HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH CS
        BTAD  57 leelrlealealaeaelrlGrae.ealaelealvaehPlrErlhrqlmrAlarsGrqaeALe 117
                 l+++  +     a+ +l    a+   +++l+++++ +P + +l  +l + l+++Gr++eALe
  EHU01688.1 177 LQDQDTRYQSLVAQIDLLKQAADtPEIQQLQSQLESDPDNAELATKLSLQLHQVGRNEEALE 238
                 55555555555555555444444356899********************************8 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00034      0.27      13      85 ..     114     192 ..     106     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
  SRP_TPR_like  13 gkelkkfkvvaliklekyeeaLkllkkgsals...edvrfEkaYvlYklkkykkalkilkkv..eaee.kvkvlksqvl 85 
                   ++elk  +++al++ +k  +aL llk++ +ls   +++ f  a vl  l++  +a  +lk v  ++++ + + l +q+ 
    EHU01688.1 114 EEELKAQQAMALMQEGKPLDALPLLKDAWQLSnkdSEIGFLLAEVLITLNRSDEAETVLKAVplQDQDtRYQSLVAQID 192
                   46788899*******************986662225789*********************9733444579999999985 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.4   2.7e+03     214     252 ..      23      69 ..       8      76 .. 0.43
   2 ?   10.1   0.0   0.00046      0.36      13     111 ..     156     266 ..     149     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.4
                 HHHHHHCTSHH...HHHTTS........-HHHHHHHHHHT-SSGCCS CS
     Pkinase 214 ekilkilgetkeklpeasei........seeakdllkkllkkdpkkR 252
                 ++i  ++  ++  +++ +e+        +e a +++   l+ d+++R
  EHU01688.1  23 MQIPVLFYFWSDRSQHCQELtpllerlaQEYAGQFILARLDCDKEQR 69 
                 33333322222222222222333444445555556666666666665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00046
                 EEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.......SSEEEEEEE--TTEB.....HHHHHHHHSS--HH CS
     Pkinase  13 GkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.......kdelylvleyvegge.....ladllerkgslsee 98 
                 ++V+  ++++++ + ++K +  ++++ + + ++++ i +lk+    p+i +l + +e+        ++l l l  v  +e     l+++++r+ + ++ 
  EHU01688.1 156 AEVLITLNRSDEAETVLKAVPLQDQDTRYQ-SLVAQIDLLKQAAdTPEIQQLQSQLESdpdnaelATKLSLQLHQVGRNEealelLFSFIKRDLNAADG 253
                 67888999***************9999875.9**********999************9999988888888888877776679999999999******** PP

                 HHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegl 111
                 +a+k++++il++l
  EHU01688.1 254 QARKMLQEILAAL 266
                 **********998 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       8.2   6.4e+03      17      24 ..      99     106 ..      98     108 .. 0.75
   2 ?   -1.3   0.1       6.5     5e+03       7      23 ..     121     137 ..     118     138 .. 0.73
   3 ?   10.9   0.0   0.00078      0.61       6      24 ..     154     172 ..     152     174 .. 0.92
   4 ?    5.4   0.2     0.047        37       7      24 ..     223     240 ..     217     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 8.2
       TPR_4  17 ldeArall 24 
                 ++eA ++l
  EHU01688.1  99 PEEAVRAL 106
                 78999887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 6.5
       TPR_4   7 LArallalGdldeAral 23 
                 +A+al + G + +A+ l
  EHU01688.1 121 QAMALMQEGKPLDALPL 137
                 68899888887777665 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00078
       TPR_4   6 aLArallalGdldeArall 24 
                 +LA++l  l ++deA+++l
  EHU01688.1 154 LLAEVLITLNRSDEAETVL 172
                 79**************998 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.047
       TPR_4   7 LArallalGdldeArall 24 
                 L   l++ G+ +eA++ll
  EHU01688.1 223 LSLQLHQVGRNEEALELL 240
                 56779**********997 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       5.4   4.2e+03      22      34 ..     104     116 ..      99     118 .. 0.63
   2 ?    2.2   0.0      0.23   1.8e+02       9      31 ..     122     144 ..     122     147 .. 0.91
   3 ?    1.1   0.0      0.51     4e+02       8      25 ..     155     172 ..     154     175 .. 0.86
   4 ?    4.1   0.1     0.059        46      12      25 ..     227     240 ..     217     240 .. 0.86
   5 ?   -2.0   0.1       4.9   3.9e+03      20      30 ..     254     264 ..     253     266 .. 0.84
   6 ?   -1.8   0.1         4   3.1e+03       8      15 ..     272     279 ..     267     280 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.4
      TPR_10  22 ealleealairrr 34 
                 +alle++l + ++
  EHU01688.1 104 RALLEKVLPREEE 116
                 3558888766555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.23
      TPR_10   9 analrqrgrydeAealleealai 31 
                 a+al q g+  +A+ ll++a ++
  EHU01688.1 122 AMALMQEGKPLDALPLLKDAWQL 144
                 899*****************987 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.51
      TPR_10   8 LanalrqrgrydeAeall 25 
                 La +l  ++r deAe  l
  EHU01688.1 155 LAEVLITLNRSDEAETVL 172
                 899999********9875 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.059
      TPR_10  12 lrqrgrydeAeall 25 
                 l+q+gr +eA++ll
  EHU01688.1 227 LHQVGRNEEALELL 240
                 89*********996 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.9
      TPR_10  20 eAealleeala 30 
                 +A+++l+e la
  EHU01688.1 254 QARKMLQEILA 264
                 69999999998 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 4
      TPR_10   8 Lanalrqr 15 
                 La+++r++
  EHU01688.1 272 LAARYRRQ 279
                 77888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1966.06
//
Query:       EHU01689.1  [L=304]
Description: putative membrane-anchored protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-30  104.5   9.5      1e-28  100.6   9.5    2.1  1  Band_7    SPFH domain / Band 7 family
    6.1e-07   29.4   0.4      1e-06   28.7   0.4    1.4  1  Band_7_C  C-terminal region of band_7
  ------ inclusion threshold ------
      0.046   13.4   0.1        0.1   12.3   0.1    1.5  1  Band_7_1  SPFH domain-Band 7 family
        2.2    8.5  14.1       0.11   12.7   5.8    2.5  3  Flot      Flotillin


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   9.5   2.2e-32     1e-28       2     177 ..      22     203 ..      21     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 2.2e-32
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvt.vvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvles 99 
                 i+++g+   v+rfG++ r+l+pGl++++Pf +++  ++++  ++ld++  +++++kD+ +vtid++  ++   d+++++++v     nl+  i +++  
  EHU01689.1  22 IVPQGYQWTVERFGRYTRTLQPGLSLVVPFMDRIGhKINMMERVLDIPS-QEIISKDNANVTIDAVCFVQA-IDPARAAYEV----SNLELAILNLTMT 114
                 79********************************88*************.****************98887.7*********....************* PP

      Band_7 100 alrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaea...........qaeiaraeae 177
                 + r v+++m+l+e+ls r+ ++ +l   l e+ + +Gv ++++ i+d++pp+e++ a++a ++ae+++           qaei rae+e
  EHU01689.1 115 NMRTVLGSMELDEMLSQRDSINTRLLHILDEATNPWGVKITRIEIRDVRPPQELIGAMNAQMKAERTKradiltaegvrQAEILRAEGE 203
                 ********************************************************************777777777777777777766 PP

>> Band_7_C  C-terminal region of band_7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.4   2.3e-10     1e-06       2      60 ..     238     297 ..     237     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.3e-10
    Band_7_C   2 kvaeaikkpggqeAvsLrvAeqYveaFgkLAkesnt..vilPanvgdvssmvaqalsiykk 60 
                 +v++ai++ g  +Av++ vA++Y +a++k++++sn+  v +P +++ + + v +  +++k+
  EHU01689.1 238 MVSDAIAS-GNIQAVNYFVAQKYTDALQKIGESSNSkvVMMPLDASSLMGAVGGISELLKE 297
                 89*****9.999*******************999986577788888888888887777765 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.3e-05       0.1     113     208 ..      84     177 ..      78     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
    Band_7_1 113 dpakllreivGtdgefdteeiseqlkslivtrlsdvlaeskipvldlaakseelaeklkealkeelaeyGlelekleienislpeevekaldkras 208
                 d+  +++ i  +   ++ ++++  + +l +t++  vl++ +  + ++ ++ +++  +l + l+e+ +  G++++++ei+++  p+e+  a++++ +
  EHU01689.1  84 DAVCFVQAIDPARAAYEVSNLELAILNLTMTNMRTVLGSME--LDEMLSQRDSINTRLLHILDEATNPWGVKITRIEIRDVRPPQELIGAMNAQMK 177
                 66677777777777777777777788888888888887655..5689999*************************************999998866 PP

>> Flot  Flotillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.79   3.5e+03      54      81 ..     139     167 ..     126     181 .. 0.71
   2 ?    1.7   2.0      0.06   2.7e+02       2      34 ..     189     212 ..     174     218 .. 0.51
   3 ?   12.7   5.8   2.4e-05      0.11       1      57 [.     210     266 ..     210     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.79
        Flot  54 lPeiieeavkple.kidsikilqvgGltg 81 
                 l +i+ ea++p   ki  i i +v   + 
  EHU01689.1 139 LLHILDEATNPWGvKITRIEIRDVRPPQE 167
                 55788888888888888888877765554 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.06
        Flot   2 AeaeAeaakleAeAkrakaeaeAegiralnEAe 34 
                 Ae  ++a++l+         ae e ++ ++ Ae
  EHU01689.1 189 AEGVRQAEILR---------AEGEKQAQILKAE 212
                 44444444444.........4444444444443 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.4e-05
        Flot   1 eAeaeAeaakleAeAkrakaeaeAegiralnEAenalseeqialqvklallealPei 57 
                 +Ae e+++a l+AeA + +aeaeA +++++ +A    + +++   v+ +  +al +i
  EHU01689.1 210 KAEGERTSAFLQAEARERQAEAEARATKMVSDAIASGNIQAVNYFVAQKYTDALQKI 266
                 59******************************9877766666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2166.05
//
Query:       EHU01690.1  [L=152]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-17   63.3   0.8    2.9e-17   62.8   0.0    1.6  2  NfeD             NfeD-like C-terminal, partner-binding
     0.0018   18.3   3.6     0.0028   17.7   3.6    1.3  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
        2.5    7.7   7.5        4.3    7.0   7.4    1.6  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> NfeD  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       0.8   4.8e+03       4      13 ..      39      48 ..      34      56 .. 0.46
   2 !   62.8   0.0   4.9e-21   2.9e-17       1      84 []      59     147 ..      59     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.8
                XXXXXXXXXX CS
        NfeD  4 vvsvlllvll 13
                ++ v+l+v++
  EHU01690.1 39 AILVGLVVWF 48
                2223333333 PP

  == domain 2  score: 62.8 bits;  conditional E-value: 4.9e-21
                 XXXXXXXXXXXXXXXXS---SSS--S...S---.GGTTSEEEEEE-B..S-EEEEETTEEEEEE-.SSB-TT-EEEEEEE-SSSEEEEE CS
        NfeD   1 ifavvsvlllvllrplllkklkkkek..ktnae.aliGkegvvledi..gtGrvkvdGeeWsarsegeiekgerVrVveveGltliVep 84 
                 +fa++++++++l+ ++l+ + ++++   +++++ ++iG + ++ +++  g G+v++++++W++++e  +++g++V++v+veG+tl ++p
  EHU01690.1  59 LFALFTLVSVFLWSRWLRYRERQQQPssLNQRGsQMIGLHLTLEQTLqnGIGHVRIGDSSWRVQAEHNLPAGTEVVIVAVEGITLRIQP 147
                 599************99987755443666777778************8658**************999*****************9987 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.6   4.7e-07    0.0028      34      95 ..      20      82 ..      15      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.7e-07
  Phage_holin_3_6 34 gsgagllgaagvlallalllllvalalala.alwlaalivaavllvlagvlalvglkklkkak 95
                     + +a +lg  g+l+  +l+++lv+l++++  + w+a  +++a++ ++ + l  + l+   +++
       EHU01690.1 20 LLAAEMLGTSGYLLWSGLAAILVGLVVWFLpMNWAAQGMLFALFTLVSVFLWSRWLRYRERQQ 82
                     567889*******************8777445*****************99998888555543 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.4   0.00072       4.3       8      65 ..      32      90 ..       8     124 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00072
     DUF4131  8 vllalllllllllllllrr..rprrrvllllllllllallgfalrapqpnandlsqlles 65
                +l+  l+++l+ l++++    ++  + +l++l+ l+ ++l+  +  ++  +++ s+l+++
  EHU01690.1 32 LLWSGLAAILVGLVVWF-LpmNWAAQGMLFALFTLVSVFLWSRWLRYRERQQQPSSLNQR 90
                23333333333333333.224666666666666666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1192.40
//
Query:       EHU01691.1  [L=138]
Description: copper responsive transcription regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-18   65.2   0.1    9.1e-18   64.1   0.0    1.6  2  MerR_1         MerR HTH family regulatory protein
    2.8e-16   59.8   5.1    4.7e-16   59.1   4.5    1.6  2  MerR-DNA-bind  MerR, DNA binding
    1.9e-14   53.1   0.1    1.3e-13   50.4   0.1    2.2  3  MerR           MerR family regulatory protein


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.5e-21   9.1e-18       1      66 [.       1      67 [.       1      69 [. 0.95
   2 ?   -2.5   0.0      0.93   5.5e+03      41      51 ..      93     103 ..      92     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.5e-21
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkr.teggrryYtdedierLklikyLlkrGltlkgikkll 66
                ++i+ vak++g+t++ +r++e++g++ p+   ++g+r+Y+ +++++L l ++ ++ G+tl+++++l 
  EHU01691.1  1 MNISAVAKKTGLTSKAIRFYEEKGVVTPPLrGDNGYRHYNTHHLDELNLLRQARQVGFTLDECRELV 67
                89***********************777777*********************************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.93
                 HHHHHHHHHHH CS
      MerR_1  41 edierLkliky 51 
                 ++ie+L+ +++
  EHU01691.1  93 AHIEELHAMRA 103
                 69999998875 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.84     5e+03      10      21 ..       7      18 ..       5      18 .. 0.86
   2 !   59.1   4.5   7.8e-20   4.7e-16       2      65 .]      45     108 ..      44     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.84
                   HHHTT--HHHHH CS
  MerR-DNA-bind 10 arrlGFsLdeIr 21
                   a+ +G++ + Ir
     EHU01691.1  7 AKKTGLTSKAIR 18
                   8999**999987 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 7.8e-20
                    HHHHHHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   2 eRLkfIrrarrlGFsLdeIrelLalyddrappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    + L++ r+ar++GF+Lde+rel al +d++++++dv+a + +k++e+ ++i+eL a+ra+L al
     EHU01691.1  45 DELNLLRQARQVGFTLDECRELVALFNDPERHSADVKARTLQKADEIAAHIEELHAMRARLLAL 108
                    6899*********************************************************876 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1   2.2e-17   1.3e-13       1      38 []       2      39 ..       2      39 .. 0.98
   2 ?   -0.2   0.0      0.14   8.6e+02      17      30 ..      42      54 ..      42      57 .. 0.76
   3 ?   -3.0   0.0       1.1   6.7e+03      10      16 ..      79      85 ..      78      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.2e-17
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +I+ vA++tG++++++R+YE++G + pp R ++GyR Y
  EHU01691.1  2 NISAVAKKTGLTSKAIRFYEEKGVVTPPLRGDNGYRHY 39
                699*********************************99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.14
                HHHHHTTSSTSEEE CS
        MerR 17 RyYEreGLipppeR 30
                +++++ +L+ +  R
  EHU01691.1 42 HHLDELNLL-RQAR 54
                599******.5555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.1
                TTTHHHH CS
        MerR 10 GvsprtL 16
                +v +rtL
  EHU01691.1 79 DVKARTL 85
                8999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1075.00
//
Query:       EHU01692.1  [L=47]
Description: hypothetical protein CKS_0132 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 409.65
//
Query:       EHU01693.1  [L=340]
Description: integrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-22   78.8   0.7    3.8e-21   75.6   0.7    2.2  1  Phage_integrase  Phage integrase family
     0.0057   16.4   0.3      0.012   15.3   0.3    1.5  1  Arm-DNA-bind_4   Arm DNA-binding domain
  ------ inclusion threshold ------
       0.02   15.3   0.0      0.056   13.9   0.0    1.8  1  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.7   6.3e-25   3.8e-21       2     169 ..     164     306 ..     163     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 6.3e-25
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      +lt++eve ll  +        + ++ ll++tG+R +E+ +L+ +++ + n+v++     +K++  r+vp+s+e+++ +k+  s +        
       EHU01693.1 164 YLTQEEVECLLGMTAG----DYYRIAVLLLATGARWGEAYQLKAENI-VGNRVMFT---LTKNGERRVVPISDEVASIVKNRKSGR-------- 241
                      79**************....777788899******************.99999999...99*******************999999........ PP

                      BSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCC CS
  Phage_integrase  96 llfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthv 169
                       lf       +s +t+r ++k+a+ +         H lRh+fat+ + +g ++ ++q++lGH++is t++Y+h 
       EHU01693.1 242 -LFR------VSYKTFRLRMKAAKPNLPDG--QAAHALRHTFATHFMMKGGNIIALQRILGHADISQTMVYAHF 306
                      .663......4799********99985444..789*************************************96 PP

>> Arm-DNA-bind_4  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3     2e-06     0.012       2      43 ..      11      48 ..      10      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2e-06
  Arm-DNA-bind_4  2 WyvrvygykdktGkrKqktkrGFktKkEAekaeaeflkkink 43
                    ++v v + +  +Gkr++   r F+ K EA + e+++++k+++
      EHU01693.1 11 YEVDV-RPRGRDGKRIR---RKFERKAEAHAFERSIIAKYQN 48
                    77777.566779*****...99*****************976 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.3e-06     0.056      38      80 ..      98     139 ..      76     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.3e-06
  Phage_int_SAM_4  38 peeltkedieaYlnyLanerklsastqknalnalsffykkvle 80 
                      + +++ + +++Y +y + e+  +ast++++l als ++k ++e
       EHU01693.1  98 IYQIDARSLIDYRAYRL-EQGIKASTINHDLFALSGIFKSMAE 139
                      689999***********.*********************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2902.14
//
Query:       EHU01694.1  [L=57]
Description: hypothetical protein CKS_0134 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1296  (0.0722851); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 448.17
//
Query:       EHU01695.1  [L=75]
Description: hypothetical protein CKS_0135 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-29   99.4   0.1    7.9e-29   99.3   0.1    1.1  1  DUF2724   Protein of unknown function (DUF2724)


Domain annotation for each model (and alignments):
>> DUF2724  Protein of unknown function (DUF2724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.1   4.4e-33   7.9e-29       2      63 .]       6      70 ..       5      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 4.4e-33
     DUF2724  2 pSfAslLkkqSpatqlrhfghGwielpdGkrwkPepsqvrllkGlskkkkgtkkirk....llrrL 63
                pS+AslLk+++++t++r+  +Gwie+pdG+++kPep++vr++kG+sk++++tkki+k    +l+rL
  EHU01695.1  6 PSLASLLKHGCQVTHYRN-TRGWIECPDGRFFKPEPNKVRFIKGMSKPFVYTKKINKglfsALARL 70
                9*****************.**************************************988844444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 654.14
//
Query:       EHU01696.1  [L=58]
Description: hypothetical protein CKS_0136 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.082   13.0   0.1       0.21   11.7   0.0    1.6  2  TGS       TGS domain


Domain annotation for each model (and alignments):
>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.14   2.5e+03      50      59 ..       1      10 [.       1      11 [. 0.84
   2 ?   11.7   0.0   1.2e-05      0.21      17      30 ..      32      45 ..      28      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.14
                B-SSEEEEEE CS
         TGS 50 LedgdvveIv 59
                +ed+ ++e++
  EHU01696.1  1 MEDEKIIELL 10
                6999999986 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.2e-05
                B-HHHHHHHHSTTH CS
         TGS 17 atveDfAykIhrsl 30
                +t++D+A+kIh++ 
  EHU01696.1 32 ETIRDLANKIHKTA 45
                79*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 446.72
//
Query:       EHU01697.1  [L=117]
Description: hypothetical protein CKS_0137 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 868.18
//
Query:       EHU01698.1  [L=284]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-60  204.5   0.0    2.5e-60  204.4   0.0    1.0  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
  ------ inclusion threshold ------
      0.062   12.9   0.1       0.11   12.1   0.1    1.3  1  Dam              DNA N-6-adenine-methyltransferase (Dam)


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4   0.0   2.8e-64   2.5e-60       1     259 [.       8     254 ..       8     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 204.4 bits;  conditional E-value: 2.8e-64
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelre 94 
                      ++GgK+  +pe+  ++p  k+ ++vepF+Gg++Vf+++  ++ +++++Din+dli ly+ ++ n +e +i+ ++  l+++   n++e+++++r+
       EHU01698.1   8 WPGGKSRVMPELLPHLP--KAGCLVEPFVGGASVFLNT--DYRRYILADINPDLIRLYREVKSN-PELVIDLARP-LFAT--GNSKEEYLQNRR 93 
                      9****************..588****************..9******************88887.9999999997.6664..47********** PP

                      HHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHH..CCEEEC-CHHHHTT--TTE.EEEE--S CS
  MethyltransfD12  95 efnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklkn..akiecgdfdavllkakieddivYlDPP 186
                       fn   + + ++ +a++flylnr++++g+ r+n+ g +nvp+g+ k+  +++e+e+++++ek+++  a ++c++f+ +l+     d+++Y+DPP
       EHU01698.1  94 IFN-GTKGLLDVARAALFLYLNRHGYNGVVRYNQSGGYNVPFGQHKTAPYFPEAEIRQFAEKANDtkAIFLCSSFQNTLKVMVGTDEAIYCDPP 186
                      ***.999999**************************************9*****************99**************9*********** PP

                      -T.S...TS--GGGG.CS-HHHHHHHHHHHHHH.HHTT-EEEEEEESEESHHHHHHCTT...SEEEEECCCCH CS
  MethyltransfD12 187 YnprqytanytlyetlafsdedevrlaevlkslsskfgvkvllsnsfkdtklfrelyksYnnesileveelra 259
                      Y p ++tan+t y+t+ f+++++++la+ l +++ k+g +v +sns  dt+ +re+y     ++++e++ +r+
       EHU01698.1 187 YLPASETANFTQYHTEPFTEKHHRQLAAELLEVNRKYGAPVVISNS--DTETTREIYHR---FRLHEIDVQRS 254
                      **********************************************..***********...******99987 PP

>> Dam  DNA N-6-adenine-methyltransferase (Dam)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.2e-05      0.11      33      87 ..     150     208 ..     139     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.2e-05
         Dam  33 aaadeeNakcekfl.teednaLkqdWskngaiflNPPY...Srilrfvkkaaeqmrekn 87 
                  +a++ N   + fl ++ +n+Lk    + +ai++ PPY   S++  f + ++e   ek+
  EHU01698.1 150 QFAEKANDTKAIFLcSSFQNTLKVMVGTDEAIYCDPPYlpaSETANFTQYHTEPFTEKH 208
                 6888889888888724569*******************555555666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2312.81
//
Query:       EHU01699.1  [L=94]
Description: hypothetical protein CKS_0139 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 719.08
//
Query:       EHU01700.1  [L=815]
Description: phage replication gene A protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-98  327.8   0.1    1.1e-97  326.9   0.1    1.4  1  Phage_GPA  Bacteriophage replication gene A protein (GPA)


Domain annotation for each model (and alignments):
>> Phage_GPA  Bacteriophage replication gene A protein (GPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.9   0.1  6.4e-102   1.1e-97       2     318 .]     100     417 ..      99     417 .. 0.96

  Alignments for each domain:
  == domain 1  score: 326.9 bits;  conditional E-value: 6.4e-102
   Phage_GPA   2 elkklakeiakalestleklsdgkkakeeedteeelakayevlaqlalsftikaPky...rkkkitaeelesaiaRltcekwwlrklkkvrkrwreela 97 
                 +++ la++ia  ++s+l+++ +   + e ++ +++   +y  +a la+ f  ++P +    +     +e+++ i+++ ++ +w r+lkk ++rwre+l+
  EHU01700.1 100 DVELLAQDIAIYMRSVLSEVHE---TVETQSDRKYAGYLYTEAAVLARLFFLTPPSWtkyCRGALFIDEATTGISKMLDDRYWHRNLKKYATRWREHLH 195
                 6778999************999...66666667777788999999999999999*997777788889999***************************** PP

   Phage_GPA  98 iavgeVskkaspyaskealkeireqkrknleflkslelededg.etidLeevvkksvsNPaiRraelmvrlrgleriaeekGdvavFlTlTapskyhat 195
                 ia g V++ a+py+sk+ + e+ +++++++ ++  leled+d+ e+i+L+e ++ks+sNPa+Rr+elm r+ g+e++a e+G+ + F TlTapskyha 
  EHU01700.1 196 IAFGDVKRGAAPYCSKHHVDEWDARRKRSRAIMARLELEDQDTkERISLIEQIDKSISNPALRRVELMTRIGGFEKVATESGYAGQFFTLTAPSKYHAY 294
                 *************************************************************************************************** PP

   Phage_GPA 196 ykngkgnskwngatprdaqdYlvkvwavlraelnkaeirvyGvrvaephhDGtlHwHlllfvrpederqinsllrtyAlredrdelsrkgakkvrfkae 294
                 +  g++n kwnga+pr++q+Yl+ vw+++rael ++ei+v+G+rvae+hhDGt+HwH llf +pe+  ++ +++++yA+red +el+ k  +++rf+++
  EHU01700.1 295 TVFGHRNAKWNGASPRATQRYLNRVWQKIRAELARREIPVFGLRVAESHHDGTPHWHGLLFSLPEHSAELLEVMEDYATREDAEELQGKHGNQPRFDMK 393
                 *************************************************************************************************** PP

   Phage_GPA 295 kidatkgsAvgYvAkYisKniDgr 318
                 +id++ gsA+gYv kYisKniDg+
  EHU01700.1 394 PIDQEIGSATGYVVKYISKNIDGY 417
                 **********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 6514.23
//
Query:       EHU01701.1  [L=95]
Description: hypothetical protein CKS_0141 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 803.94
//
Query:       EHU01702.1  [L=73]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-15   55.9   0.0      3e-15   55.8   0.0    1.1  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 
  ------ inclusion threshold ------
      0.048   13.5   0.0        0.1   12.5   0.0    1.5  2  KH_4             KH domain
       0.15   12.2   0.0        4.8    7.5   0.0    2.3  2  HTH_17           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0     5e-19     3e-15       1      56 [.       1      55 [.       1      70 [. 0.90

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5e-19
                     CEEEEHHHHHHTHHHHHHHHHHHT-EEEEEETTEEEEEEEEHHHHHHHHH.HHHHH CS
  PhdYeFM_antitox  1 mkivsiseakanlselldeveegeepviItrrGkpvaVlvsleeyerlqeltekll 56
                     m++++ s+a++n++e+++++ +ge+ v Itrr++++aVl+s ++++++qe++++ +
       EHU01702.1  1 MRTYTTSQARQNIAEVMEAATAGEP-VEITRRDGSAAVLISRDDFNAWQEAKLDAE 55
                     99********************996.************************877765 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.49   2.9e+03      17      21 ..      25      29 ..      10      45 .. 0.54
   2 ?   12.5   0.0   1.7e-05       0.1      40      54 ..      56      70 ..      47      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.49
        KH_4 17 evevt 21
                 ve+t
  EHU01702.1 25 PVEIT 29
                33333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
        KH_4 40 lGrvIGkrGrtldAl 54
                 + + G++Grt++Al
  EHU01702.1 56 FAEIMGRHGRTIKAL 70
                56799*********8 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0008       4.8      36      49 ..      37      50 ..      25      52 .. 0.82
   2 ?    2.5   0.0     0.028   1.7e+02       6      24 ..      55      73 .]      54      73 .] 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0008
      HTH_17 36 wriprsdleewlek 49
                ++i+r+d+ +w e+
  EHU01702.1 37 VLISRDDFNAWQEA 50
                89*********997 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.028
      HTH_17  6 EaAelLgvsrstvyrlirr 24
                E+Ae+ g + +t+  l++r
  EHU01702.1 55 EFAEIMGRHGRTIKALADR 73
                99***********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 703.93
//
Query:       EHU01703.1  [L=127]
Description: death-on-curing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-09   36.2   0.3    2.8e-08   34.5   0.3    1.8  1  Fic       Fic/DOC family
      0.007   16.8   0.0        2.7    8.5   0.0    2.4  2  Ntox33    Bacterial toxin 33


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3   3.1e-12   2.8e-08       1      97 []       3      84 ..       3      84 .. 0.72

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.1e-12
                --SHHHHHHHHCHS-S------TS--SS-ST..EEEE---SCCCHHHHHHHHHHHHCHHT-S-HHHHHHHHHHHHHHH--SSS-HHHHHHHHHHHHH CS
         Fic  1 pltledllelhrlllqdigeeagefrdeevsegklesalappeevpaeleelleylnelekeeplekaaalhyefekiHPFaDGNgRtarlllnllL 97
                +++++++++ h++ll+ ++  +g      +  g++e+ + + ++  ++           + e++ e+aa+++  + + H F+DGN+Rta++++ ++L
  EHU01703.1  3 WISAQEVIAFHDRLLAALPGVQGMPE---P--GRAEAIIYRVQNQLYY-------E---GVEDIHELAAMYLVAISRGHIFNDGNKRTAFFVAMAFL 84
                57888888888888888884322222...2..5556666655544333.......2...244566***************************99887 PP

>> Ntox33  Bacterial toxin 33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0018        16      22      43 ..      50      72 ..      36      81 .. 0.85
   2 !    8.5   0.0    0.0003       2.7      14      26 ..      82      94 ..      78     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0018
      Ntox33 22 dahdlk.grgksisrlDlykDkk 43
                d+h+l  ++ ++isr  ++ D++
  EHU01703.1 50 DIHELAaMYLVAISRGHIFNDGN 72
                89***99**************86 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0003
      Ntox33 14 klLkkkGidahdl 26
                 +Lk++Gid++d 
  EHU01703.1 82 AFLKRNGIDIRDE 94
                79*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1063.76
//
Query:       EHU01704.1  [L=352]
Description: phage-related capsid packaging protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-14   53.2   0.0    3.1e-14   52.9   0.0    1.1  1  Phage_portal  Phage portal protein


Domain annotation for each model (and alignments):
>> Phage_portal  Phage portal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.7e-18   3.1e-14      49     285 ..     104     350 ..      96     352 .] 0.79

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.7e-18
  Phage_portal  49 yeflealvanlllygnayalivrdgr.rvvelyplppdrvt.....grleydytddggg..vlpaddvlhirglpl.d..lkGlspleaareaiela 134
                   ++ + a++ ++++ gnay +   ++   + +l+++p+ +++     +  +y + ++ +    ++a +v+hi  +p+ +  ++G++  + a  +  l+
    EHU01704.1 104 RQAFSAFALDWFVFGNAYLERRSNRLgDPLKLKHVPALNTRrgsdlD--TYWFIRQWKDeyEFKAGEVCHIM-NPDiHqeIYGMPEYMGALLSASLS 197
                   566789999***********876544788899999999999998543..44444444445666*********.5544468***************** PP

  Phage_portal 135 laaeeyaakffkngarpsgilkikapgklseeqreklkeefeeaysgas.nagkvavleggldykpl.sl...spkdaqflesrkfaaeeIarafgv 226
                   ++a+++ +  ++ng++ + il + + +k+++e  + +++ +++a +  s ++  +   +gg d  +l ++   s+kd +fl+++ +++++   a ++
    EHU01704.1 198 HSADKFRKLYYDNGSHAGCIL-YVGSEKVDQESIKVVQKTLSQARGKGSfKNVLIHAPGGGKDGVQLlPFsqiSAKD-EFLNIKSATRNDLRDAHRI 292
                   *********************.4444578999887777777766665555554455666667766666776768888.******************* PP

  Phage_portal 227 pphllgd..lgkstysnieeanlafyentlepllkrieqelnrkLlkkglylefdldgllr 285
                   pp+l+g   +g+++  ++e+a + f  n ++p+++++    n +L      ++f++ +ll 
    EHU01704.1 293 PPQLMGAmpEGNGSLGDVEKAARVFAINEMLPVMEAMKGV-NDWL--GQEVIRFNPYALLK 350
                   ******973446777********************99875.6688..45789999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2869.74
//
Query:       EHU01705.1  [L=576]
Description: terminase, ATPase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-52  176.4   0.4    9.7e-52  175.7   0.4    1.3  1  Terminase_6      Terminase-like family
    3.2e-28   98.8   0.0    5.9e-28   97.9   0.0    1.5  1  Terminase_6C     Terminase RNaseH-like domain
    1.5e-26   92.0   0.8      3e-26   91.1   0.8    1.5  1  Terminase_5      Putative ATPase subunit of terminase (gpP-li
    1.2e-07   31.4   1.4    3.1e-07   30.0   0.0    2.4  2  HTH_23           Homeodomain-like domain
    3.4e-06   27.1   0.2    9.2e-06   25.7   0.2    1.8  1  HTH_28           Helix-turn-helix domain
    0.00053   20.2   0.4     0.0014   18.9   0.1    1.9  2  HTH_Tnp_1        Transposase
    0.00077   19.1   0.0     0.0021   17.7   0.0    1.8  1  Sigma70_r4_2     Sigma-70, region 4
      0.002   17.8   0.0      0.005   16.6   0.0    1.6  1  HTH_38           Helix-turn-helix domain
     0.0043   17.2   0.1        1.4    9.1   0.0    2.6  2  HTH_17           Helix-turn-helix domain
     0.0052   16.8   1.8     0.0061   16.5   0.0    2.0  2  Phage_terminase  Phage terminase small subunit
     0.0056   16.7   0.1      0.031   14.3   0.0    2.2  2  HTH_29           Winged helix-turn helix
     0.0072   16.5   0.0      0.022   14.9   0.0    1.8  1  HTH_Tnp_1_2      Helix-turn-helix of insertion element transp
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.034   14.0   0.0    1.8  1  DUF86            Protein of unknown function DUF86
      0.019   15.0   0.2       0.36   11.0   0.0    2.6  2  HTH_7            Helix-turn-helix domain of resolvase
      0.067   13.6   0.0        0.2   12.1   0.0    1.8  2  DUF1323          Putative transcription regulator (DUF1323)
       0.11   12.5   0.1       0.24   11.4   0.1    1.6  1  DUF1804          Protein of unknown function (DUF1804)


Domain annotation for each model (and alignments):
>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7   0.4   8.7e-55   9.7e-52       1     211 [.     144     368 ..     144     370 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 8.7e-55
                  .EEE-SSS-HHHHHHHHHHHHHHSSSS......-EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEEEES....SHHHHH CS
  Terminase_6   1 lilggrqsGKTfagarellrhalgrgp.....rnqvflsasktqareeggqfekgigelakeildiefeesaknlvvlsnGaslhflslesetaggiq 93 
                  +il++rq+G+T+++are+l +al  +      rnq+flsas++qa++    f+ +i+++a+e +d+e++   ++ +vlsnGa+lhfl+++++ta++++
   EHU01705.1 144 MILKSRQIGATWYFAREALLDALRDDVkypyqRNQIFLSASRRQAHQ----FRGFIQKMAEE-VDVELK--GGDKIVLSNGAELHFLGTSAATAQSYT 234
                  79*********************9998999*****************....***********.******..9999999******************** PP

                  TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSSHHHHHHHHHHCTSS-EEEEE-GGGSG..................B-TTSBB CS
  Terminase_6  94 GaqidliyfDElteipksqelekvtrlratkgtdtktfattpptpdhgvydfvtgwldeegpqsvtkiqavve..................vtiedak 173
                  G    ++ fDE+++++++++l+kv+ ++at ++ t+t+++tp+ ++h++y+f+tg+ ++e++++++++ ++v                   vt +d  
   EHU01705.1 235 G----NLKFDEFFWVSNFTNLRKVAGAMATLKGLTRTYFSTPSGETHEAYPFWTGDRWNEKRPKAQRKAFDVGwktlnsgllcpdktwrqiVTLKDVI 328
                  *....********************************************************88888888888888888******************** PP

                  -TTHHHH..HHHHHTS-HHHHHHHHS---TTCTCESSXCH CS
  Terminase_6 174 klgedli..eeleaeysveerarllrGewidtsgsiFqrs 211
                  ++g+++   ee+++e+s++e+++l+++e++ ++ s F+ +
   EHU01705.1 329 DHGWEYTdlEEIQDENSEDEFRNLYMCEFVRDGESAFNLN 368
                  *************************************976 PP

>> Terminase_6C  Terminase RNaseH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   5.3e-31   5.9e-28       1     154 [.     399     560 ..     399     561 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 5.3e-31
                   EEEE--SS.CTTBEEEEEEE...ETTTTCEEEEEEEEESSS-CCCHHHHHHHHHHCTTCEEEEECCSC.HHHHHHHHHHCCT--S-SCEESSH..HH CS
  Terminase_6C   1 igvDpaeg.rggDyaalvvi...dvkddkfellavlherglspalqaaaikklaerynviyvyieits.aGesvaellkrdlesealavkpepaskd 92 
                   ig+D + +  +gD+ a++v+    v+++kf++++ ++ rgl++++qa  i++ + +ynv++v+i+ t+  Ge+v++ +k++++  a +++++    +
    EHU01705.1 399 IGYDANGSsGNGDSGAICVVvppLVPGGKFRTVETEQVRGLEFEEQAKVIENFTFKYNVQHVGIDVTGgNGEAVYQIVKKFFP-MAMPYTMSM--TS 492
                   7999998899*********************************************************99*************9.346666666..** PP

                   HHHHHHHHHHHHHTTSEEEETHH.CECCCCCCHCC-EEHCC.....HHCHCSGCCTCHHHHHHHHHHT CS
  Terminase_6C  93 katrvskvkdliesgrlkvdkga.ecaksfealegfhtdlg.....aerstsaehdDlvdAlsyalla 154
                   k+++v+k+ +li++gr+++d+++ ++ + f+ +++ +t++g     ++rs+  +h Dl++A + a+++
    EHU01705.1 493 KRALVLKMLQLIRAGRWEYDRSErALINAFNSVRKVKTPGGfitydTDRSRGVSHGDLAWANMLAIIN 560
                   *****************************************************************987 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.8   2.6e-29     3e-26       2      58 .]       7      63 ..       6      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 2.6e-29
  Terminase_5  2 vRrqArlLYwqGyrvaeIAeelglkeatVysWkkrdewddldplsrveeaieaRlvt 58
                 vR++A++LYwqGy++aeIA+ +g++++t+y+Wkkrdewd+++p++rv ++++aRl++
   EHU01705.1  7 VRQRAKQLYWQGYPPAEIARLMGINQNTIYAWKKRDEWDETPPVQRVSQSMDARLIQ 63
                 9******************************************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.7e-10   3.1e-07       6      40 ..       7      41 ..       3      43 .. 0.94
   2 ?   -2.1   0.1       3.3   3.7e+03       6      15 ..     493     502 ..     491     511 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 2.7e-10
      HTH_23  6 eRlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40
                 R+r+ +l+ +G++++eIAr++g++++T+y w+kr
  EHU01705.1  7 VRQRAKQLYWQGYPPAEIARLMGINQNTIYAWKKR 41
                69********************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.3
      HTH_23   6 eRlrilllla 15 
                 +R+++l++l+
  EHU01705.1 493 KRALVLKMLQ 502
                 7999999987 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   8.2e-09   9.2e-06       7      35 ..      13      41 ..       7      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.2e-09
      HTH_28  7 kllaaGhsvreaArelgisrrtvyrWikr 35
                +l+++G + +e+Ar++gi++ t+y W kr
  EHU01705.1 13 QLYWQGYPPAEIARLMGINQNTIYAWKKR 41
                89*************************98 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.3e-06    0.0014      12      54 ..       7      48 ..       3      68 .. 0.73
   2 ?   -3.0   0.0       8.5   9.5e+03       4      14 ..     108     118 ..     105     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
   HTH_Tnp_1 12 KariVreslepgksvsevArrhgvspnqLykWrrqyregeeas 54
                  +  ++ + +g++ +e+Ar +g+++n+ y+W++  + +e+ +
  EHU01705.1  7 VRQRAKQLYWQGYPPAEIARLMGINQNTIYAWKKRDEWDET-P 48
                55556777899***********************9953333.3 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.5
   HTH_Tnp_1   4 rrrwsdefKar 14 
                 ++++++e++++
  EHU01705.1 108 KNHFTEEQIVA 118
                 68999999875 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.9e-06    0.0021      23      49 ..      15      41 ..      13      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.9e-06
                  HTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 23 yleglsykEIAellgisegtVksrlsR 49
                  y++g++ +EIA+l+gi+ +t++ + +R
    EHU01705.1 15 YWQGYPPAEIARLMGINQNTIYAWKKR 41
                  89*******************988665 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.4e-06     0.005      10      38 ..       8      36 ..       8      36 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.4e-06
      HTH_38 10 ReeIerllaeGlslreIArrLgrspsTIs 38
                R++  +l+ +G+  +eIAr++g + +TI+
  EHU01705.1  8 RQRAKQLYWQGYPPAEIARLMGINQNTIY 36
                788899**********************7 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0013       1.4       3      21 ..      20      38 ..      19      43 .. 0.88
   2 ?    5.2   0.2     0.021        24      22      48 ..     141     167 ..     130     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
      HTH_17  3 tveEaAelLgvsrstvyrl 21
                 ++E+A+l g+ ++t+y +
  EHU01705.1 20 PPAEIARLMGINQNTIYAW 38
                579***************9 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.021
      HTH_17  22 irrgelpaakiGrrwriprsdleewle 48 
                 ++r  l+   iG  w++ r++l + l+
  EHU01705.1 141 RNRMILKSRQIGATWYFAREALLDALR 167
                 4566887778************98765 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.5e-06    0.0061      27      50 ..      23      46 ..       7      63 .. 0.85
   2 ?   -2.9   0.4       6.3   7.1e+03      46      52 ..     286     292 ..     283     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.5e-06
  Phage_terminase 27 dIAkvLdvsestvrkWKakDkWde 50
                     +IA  +++ ++t+  WK +D+Wde
       EHU01705.1 23 EIARLMGINQNTIYAWKKRDEWDE 46
                     7**********************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.3
  Phage_terminase  46 DkWdekl 52 
                      D+W+ek 
       EHU01705.1 286 DRWNEKR 292
                      99**984 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.7e-05     0.031       7      35 ..      14      41 ..       8      49 .. 0.87
   2 ?   -1.5   0.1       2.4   2.7e+03      42      61 ..      97     115 ..      83     116 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
      HTH_29  7 llaeGvstvsqiAkllglsrrtvyrwlkr 35
                l+ +G + +++iA+l+g+   t+y w+kr
  EHU01705.1 14 LYWQGYP-PAEIARLMGINQNTIYAWKKR 41
                5668999.********************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.4
      HTH_29  42 aalldrrrsgrprnrlseeq 61 
                 + + +++r++ ++n ++eeq
  EHU01705.1  97 G-AGKKPRKRKLKNHFTEEQ 115
                 3.334677777777788888 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     2e-05     0.022      30      54 ..      22      46 ..      11     103 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
                 HHHHHHHTS-HHHHHHHHH-HHHHH CS
  HTH_Tnp_1_2 30 deiaeevgvsrsTlykWkkkkeFie 54
                 +eia+ +g++++T+y Wkk  e+ e
   EHU01705.1 22 AEIARLMGINQNTIYAWKKRDEWDE 46
                 79****************8877643 PP

>> DUF86  Protein of unknown function DUF86
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     3e-05     0.034      75     103 ..     314     342 ..     312     355 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
                 HHHHHHHHHCCHHHHHT-CCCTTHHHHHH CS
       DUF86  75 peepwrkmiglRNrLvHgYlgidpeivws 103
                 p+++wr++++l++++ Hg++  d+e++ +
  EHU01705.1 314 PDKTWRQIVTLKDVIDHGWEYTDLEEIQD 342
                 789**********************9976 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00032      0.36      12      39 ..       9      36 ..       8      40 .. 0.95
   2 ?    0.7   0.1       0.5   5.6e+02       2      20 ..     103     122 ..     103     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
                GGGGSSTTTT--STTTSSSS---SSSS- CS
       HTH_7 12 nrvvkLleeGisiskIAkevnisRsTvY 39
                +r+++L+ +G++ ++IA+  +i   T+Y
  EHU01705.1  9 QRAKQLYWQGYPPAEIARLMGINQNTIY 36
                689************************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
                 ---SS-HH.HHGGGGSSTTT CS
       HTH_7   2 Rpsklskn.dinrvvkLlee 20 
                 R++kl+ + + +++v+L+e+
  EHU01705.1 103 RKRKLKNHfTEEQIVALREK 122
                 9*******999*****9985 PP

>> DUF1323  Putative transcription regulator (DUF1323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017       0.2       3      46 ..      21      66 ..      19      75 .. 0.80
   2 ?   -2.9   0.0       7.8   8.7e+03      34      68 ..     423     458 ..     421     483 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
     DUF1323  3 peelaellGyarqtinrWvRkegWktep.lpGv.kGGkarlvlide 46
                p+e+a+l+G+ + ti  W ++++W  +p ++ v +   arl+ +++
  EHU01705.1 21 PAEIARLMGINQNTIYAWKKRDEWDETPpVQRVsQSMDARLIQLTD 66
                79**********************8665244432667788887765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.8
     DUF1323  34 vkGGkarlvlideqvr..efirnaealrnsaalyrve 68 
                 v GGk r v  + qvr  ef ++a+ ++n +  y+v+
  EHU01705.1 423 VPGGKFRTVETE-QVRglEFEEQAKVIENFTFKYNVQ 458
                 567888877754.443226766666666666665543 PP

>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00021      0.24       4      51 ..       4      45 ..       1      63 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
     DUF1804  4 deevrkavRsaYvferlsleeaAkkagvseaTarrwkreakekGdDWD 51
                d+ vr+++ + Y  +  + +e+A  +g++++T+ +wk+ ++     WD
  EHU01705.1  4 DAFVRQRAKQLYW-QGYPPAEIARLMGINQNTIYAWKKRDE-----WD 45
                5668999*****9.556999*****************9874.....44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 4763.79
//
Query:       EHU01706.1  [L=278]
Description: capsid scaffolding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-90  303.6   0.2    1.6e-90  303.4   0.2    1.0  1  Phage_GPO      Phage capsid scaffolding protein (GPO) serine 
     0.0011   19.2   0.2     0.0078   16.5   0.1    2.1  2  DUF4061        Domain of unknown function (DUF4061)
  ------ inclusion threshold ------
       0.18   12.3   2.2        1.3    9.5   0.6    2.6  2  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.4   0.2   2.7e-94   1.6e-90       2     271 ..      10     277 ..       9     278 .] 0.95

  Alignments for each domain:
  == domain 1  score: 303.4 bits;  conditional E-value: 2.7e-94
   Phage_GPO   2 kffrvaveGaTtdGreierewleqmaanYdpkvYgArinleHlksllpdstfkaygdvlalkaeeiedgplkgklaLyaeidptddLvalnkkrqKvyt 100
                 k frvav GaT+dGrei+ e+l++ aanY+p+vYgAr+n+eH+ s +p s+f a+gdv+al+ae+i++gpl+g+ aLyaei+p++++ +l+++++K+y+
  EHU01706.1  10 KKFRVAVSGATVDGREIRPEHLRDAAANYSPDVYGARVNVEHYLSPFPGSDFGAMGDVTALSAEDISEGPLAGRTALYAEIEPSERMKKLTEEGKKIYS 108
                 88************************************************************************************************* PP

   Phage_GPO 101 SieinpkfadtgkAYLvGLAvTDsPAsLGtemLefaaka.kanplakrkqspenlftaavet.alefeeeeeeeegeslferikallskkkksddarfa 197
                 Sie++p+fa +gkAY++GLA+TD+PAsLGte L+faa++ ++ +  +++q ++ lft+a+e+  +e++e++++e  +++f ri+ ++ k +ksd ++f+
  EHU01706.1 109 SIELHPQFALNGKAYVMGLAMTDTPASLGTERLKFAAQQrQQVMSFNNQQGEAPLFTDAIEAeIIELAEQRSDEG-KQWFGRIMGIIGKGRKSDGEQFS 206
                 **************************************966777788899999*********4467877776665.*********************** PP

   Phage_GPO 198 dveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrpeatGeegevltd 271
                 +v++ave+vA+++++l ++++   +l+++ ++ +++++kl+++l+aL++kL +tda+ +qr++a+G+++++l+d
  EHU01706.1 207 QVRDAVENVAQSHADLLDSFN---DLSRAREQDSQDIQKLTSDLAALTSKLGSTDANFSQREPASGGANAQLAD 277
                 *********************...778889999999******************************99998887 PP

>> DUF4061  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.24   1.4e+03      68      88 .]      91     111 ..      73     111 .. 0.84
   2 !   16.5   0.1   1.3e-06    0.0078      26      85 ..     197     252 ..     191     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.24
     DUF4061  68 esdenlkkLvskLeqLsksIe 88 
                 e +e +kkL+++ +++ +sIe
  EHU01706.1  91 EPSERMKKLTEEGKKIYSSIE 111
                 557899****99999999997 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.3e-06
     DUF4061  26 GkdcsleqleeiReqQekLarlhfeldaeeeelaekeedalresdenlkkLvskLeqLsk 85 
                 G++   eq++++R+  e++a+ h +l  + + l++ +e    + +++++kL+s+L +L++
  EHU01706.1 197 GRKSDGEQFSQVRDAVENVAQSHADLLDSFNDLSRARE----QDSQDIQKLTSDLAALTS 252
                 5556679******************9888876665444....455677777777777654 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.085   5.1e+02      72      88 ..      22      39 ..       1      41 [. 0.64
   2 ?    9.5   0.6   0.00023       1.3      36      96 ..     211     270 ..     202     271 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.085
  T7SS_ESX_EspC 72 asteLa.dkLraAAaaYe 88
                   +++e++ + Lr AAa+Y+
     EHU01706.1 22 DGREIRpEHLRDAAANYS 39
                   555554367899999986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00023
  T7SS_ESX_EspC  36 asaavldshGpicaatndavaaaeaar...raagealaaasteLadkLraAAaaYeatDeeaag 96 
                    a+++v++sh    a++ d+++++ +ar   ++++++l  +++ L  kL ++ a++++++ +++g
     EHU01706.1 211 AVENVAQSH----ADLLDSFNDLSRAReqdSQDIQKLTSDLAALTSKLGSTDANFSQREPASGG 270
                    556666665....4455555555555500055666666666666779********999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2104.01
//
Query:       EHU01707.1  [L=349]
Description: phage major capsid protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.7e-116  386.5   0.1   9.9e-116  386.3   0.1    1.0  1  Phage_cap_P2  Phage major capsid protein, P2 family


Domain annotation for each model (and alignments):
>> Phage_cap_P2  Phage major capsid protein, P2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.3   0.1  5.5e-120  9.9e-116       2     326 .]       9     339 ..       8     339 .. 0.98

  Alignments for each domain:
  == domain 1  score: 386.3 bits;  conditional E-value: 5.5e-120
  Phage_cap_P2   2 fnaylarlaklngveseevsekFsvepsveqkLeekiqessefLkkInvvgVdeqkGekvglgvsgliasrtdtskkeRktkdvtkldsnkYelekt 98 
                   f++y+ar+a+lngv++++v++kF+v+p+ +q+Le++ q+ ++fL+kInv+gV++q G+kv +g++g++a+ +++ +++R++ + + ++  +Y ++k+
    EHU01707.1   9 FDQYIARQAQLNGVSTAAVAAKFAVDPTRQQRLEQAAQQDDSFLSKINVFGVNQQIGQKVLIGSKGPMAGVNNSVTSRRNPGSNHSMEPFDYMCRKV 105
                   99*********************************************************************************************** PP

  Phage_cap_P2  99 nsdtaikYakldawakfkdfqkrlreaiakrialdrimiGfnGtsvaattdraanpllqDVnkGWlqklreeapervltegkkes.....kivigeg 190
                   n+d+ i+Y++ldawa++++fq ++++a+a++++ldrimiGfnG+++++ +draanpllqD+ +GWl+k+r+eap+rv+++++ +s     kiv+  +
    EHU01707.1 106 NYDYGISYEQLDAWAHMPEFQPLISKAMARQMSLDRIMIGFNGVKYSDPSDRAANPLLQDCGIGWLEKIRQEAPHRVISNVTITSrdednKIVA--K 200
                   ********************************************************************************99988889767776..9 PP

  Phage_cap_P2 191 gdyknLDalvfdavnslideeyredtdLVvlvGrdLladkkfklln...ktntekeklaaqliisqkrigglpavrvPffPakallvTsldNLsiYt 284
                   g+y n+ a+v+da+nsl+de++++++d Vv+++ dLl++++f  +n   +tn+++e+la+qli++q+r+g++p++++P+f  +++l+T+++NLs+Y+
    EHU01707.1 201 GTYGNIGAAVYDAKNSLMDEWHKRNPDNVVILAGDLLTSSNFSAINalsQTNPNTEMLAGQLIVAQERVGNMPTFIAPYFQVNGVLITPFKNLSVYY 297
                   ************************************************************************************************* PP

  Phage_cap_P2 285 qegsrrrkiednpkrdrienyessnegYvvedyelaalieni 326
                   q+g+ rr+i+++p+++r+++y+ssn+++v+edy+++a+i++i
    EHU01707.1 298 QRGGLRRTIKEEPEYNRVATYQSSNDDFVIEDYGNVAFIDGI 339
                   ***************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2556.95
//
Query:       EHU01708.1  [L=285]
Description: hypothetical protein CKS_0148 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-39  135.1   0.0    2.4e-39  134.3   0.0    1.5  1  Phage_term_smal  Phage small terminase subunit


Domain annotation for each model (and alignments):
>> Phage_term_smal  Phage small terminase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3   0.0   1.3e-43   2.4e-39       1     129 [.      35     167 ..      35     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.3 bits;  conditional E-value: 1.3e-43
  Phage_term_smal   1 laaLeedkrrLkeiqsieeKaelKrelLpkYqpwvegvlaagsgaqdevlvtvlvWliDvgdyeqALdiaeyaiahglelPdrfkrtlatvvae 94 
                      l++L++d +rL+ +qs e+Kae+K+++Lp+Y+ w+eg+l+ ++g+qdev+++++vW+iD+ dy+ A+++++y+++hgl+lPd+f+rt+at+++e
       EHU01708.1  35 LHRLRMDLSRLSGVQSEETKAEMKKSMLPEYEGWIEGTLDGDNGRQDEVITRLMVWAIDCRDYALAMRLGRYVVRHGLTLPDNFNRTAATFLTE 128
                      689******************************************************************************************* PP

  Phage_term_smal  95 eiadaalkalkagqsvel....pyLsrveklteeedlpd 129
                      e+ +  l+ ++a++ ++l    ++L++v+ +++++d+pd
       EHU01708.1 129 EMSKPLLTLAAADADADLssgiAVLDEVAGIVADSDMPD 167
                      **999888777555555333339***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2123.04
//
Query:       EHU01709.1  [L=174]
Description: hypothetical protein CKS_0149 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-41  141.7   0.1    2.4e-41  141.0   0.1    1.3  1  Phage_GPL        Phage head completion protein (GPL)
  ------ inclusion threshold ------
       0.19   12.1   0.0       0.31   11.5   0.0    1.3  1  Acylphosphatase  Acylphosphatase


Domain annotation for each model (and alignments):
>> Phage_GPL  Phage head completion protein (GPL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.1   2.6e-45   2.4e-41       2     138 ..      28     173 ..      27     174 .] 0.92

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 2.6e-45
   Phage_GPL   2 tndgFfPdidladfreamrldgtvteerlraalleAiaevnaeLaawrakqqaaGyatlaavpa.......ee..idgesvlvalYrrAVyarAkAdLl 91 
                 +   F+P i+lad+r a r+ g +t++rl +  +eA+a+v a+L +wra q +aG++tl++vp+       e+  i+ge+v+v+++rrAVy++A+A +l
  EHU01709.1  28 SAGDFWPVIKLADLRLAARITGGITTSRLMHVTTEAVAHVTAQLLDWRAGQIKAGFHTLEDVPSvlpsgdtEKlvINGENVKVYRFRRAVYSIARALVL 126
                 5678***********************************************************955444331144778********************* PP

   Phage_GPL  92 eryrdidttaagekkaeelettrddllrdarwairdikgrkritvel 138
                 e yrd+dtta+g+k+a++l+ +rddl+rdarw i+di  ++r  +el
  EHU01709.1 127 EGYRDVDTTAKGDKDAAALDLQRDDLWRDARWSIADIRDTPRLYAEL 173
                 ******************************************99998 PP

>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.4e-05      0.31       3      30 ..     101     129 ..      99     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
  Acylphosphatase   3 llvtG.rVQgvgFRkfvrrlAkelglkGy 30 
                      l++ G +V    FR+ v+++A+ l l+Gy
       EHU01709.1 101 LVINGeNVKVYRFRRAVYSIARALVLEGY 129
                      6789989999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1300.73
//
Query:       EHU01710.1  [L=66]
Description: putative phage tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-22   77.6   0.0    4.8e-22   77.4   0.0    1.0  1  Phage_tail_X  Phage Tail Protein X
     0.0021   18.1   0.0     0.0029   17.6   0.0    1.2  1  LysM          LysM domain


Domain annotation for each model (and alignments):
>> Phage_tail_X  Phage Tail Protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   5.3e-26   4.8e-22       1      57 [.       1      56 [.       1      59 [. 0.95

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 5.3e-26
                  -EEEE-TT-SHHHHHHHTTS--TTTHHHHHHHSTTTTTT-S---TTEEEE-TT--SS CS
  Phage_tail_X  1 mkvyatqgdtlDalcwryYGrtlgvveavleaNPgLAelgpvLphGtavelPdistt 57
                  mkv a qgdt+D+lcwr+YG t+gv+e+vl aNPgL +   +L +G ++elP+i+  
    EHU01710.1  1 MKVKALQGDTVDLLCWRHYGTTQGVTEKVLSANPGLSQQ-VFLEAGQEIELPEIAHK 56
                  89***********************************98.9*************865 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.3e-07    0.0029       5      44 .]       7      51 ..       5      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.3e-07
                TT--HHHHHHHC.....TCHHHHHHHHC.TCSSCGG--TTEEEEEE CS
        LysM  5 kGDTLwsIAkry.....gitveklleaN.nlsspdkifpGqkLkiP 44
                +GDT+  +  r+     g+t ek l+aN +ls++  +++Gq++ +P
  EHU01710.1  7 QGDTVDLLCWRHygttqGVT-EKVLSANpGLSQQVFLEAGQEIELP 51
                69999999999999999999.*********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 587.31
//
Query:       EHU01711.1  [L=100]
Description: hypothetical protein CKS_0151 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00018   21.2   0.1    0.00027   20.6   0.1    1.3  1  Phage_holin_2_3  Bacteriophage holin family HP1
    0.00093   18.9   0.9     0.0013   18.5   0.7    1.3  1  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l
  ------ inclusion threshold ------
      0.024   14.0   0.0       0.03   13.7   0.0    1.1  1  tRNA-synt_1b     tRNA synthetases class I (W and Y)
       0.11   12.8   0.1       0.13   12.5   0.1    1.1  1  DUF1430          Protein of unknown function (DUF1430)
       0.17   12.5   0.0       0.22   12.1   0.0    1.2  1  DUF4646          Domain of unknown function (DUF4646)


Domain annotation for each model (and alignments):
>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   7.6e-08   0.00027       8      51 ..      14      57 ..       7      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.6e-08
  Phage_holin_2_3  8 AYisSavavvlGllsLseWAiviGIicgvvTfliNwyykrkelr 51
                      ++ Sa+ + +G+++Lse  ++ G+++g+v  +  w y+ +  r
       EHU01711.1 14 TFTMSAMVTSIGVMTLSEKIALAGLLVGMVFGARGWLYRARIER 57
                     6899**************************99999999988665 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.7   3.5e-07    0.0013      20      69 ..      18      67 ..      14      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.5e-07
  Phage_holin_2_4 20 GavvsfaGflasselialvGlavAliGlLvnWyYkreanRRaaaehelre 69
                      a+v+ +G ++ se ial Gl+v ++     W Y++  +R ++   el +
       EHU01711.1 18 SAMVTSIGVMTLSEKIALAGLLVGMVFGARGWLYRARIERGQKRRNELIN 67
                     689999*****************9987778******99999988888755 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.2e-06      0.03     180     216 ..      59      93 ..      44      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.2e-06
                   TSS-EEEEET-BBSTTSSSBTTCETTCGC-BTTCCHH CS
  tRNA-synt_1b 180 fkkpegltvplltgldGekKmSKSagnsaIfLddeke 216
                    k +  l++++l++++   KmSKS+   a++L+ ++e
    EHU01711.1  59 QKRRNELINQILEQAAHR-KMSKSERR-ALDLLQQNE 93 
                   467899************.********.****98876 PP

>> DUF1430  Protein of unknown function (DUF1430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.6e-05      0.13      33      91 ..       2      60 ..       1      70 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.6e-05
     DUF1430 33 Gyslfkrhkeyliiqlivllillvlifiltkekiillvvlvlllielllillvqekiek 91
                G+s+f+r +  l++++  ++ +++++++++k  ++ l+v +++    +l+ ++ e+ +k
  EHU01711.1  2 GLSFFQRLNDWLTFTMSAMVTSIGVMTLSEKIALAGLLVGMVFGARGWLYRARIERGQK 60
                9*****************************************99999998887766555 PP

>> DUF4646  Domain of unknown function (DUF4646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.1e-05      0.22      55     116 ..      10      72 ..       8      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-05
     DUF4646  55 edWkrFled..ikaaaalstaekiaagvaplalslgllgllvskaiekkmkkkkegsvgelieq 116
                 +dW  F+    +++ + ++ +ekia + + + + +g+ g l +  ie++ k++ ++ +++++eq
  EHU01711.1  10 NDWLTFTMSamVTSIGVMTLSEKIALAGLLVGMVFGARGWLYRARIERGQKRR-NELINQILEQ 72 
                 699999754227788899*****************************997765.5678888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      859  (0.0479112); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 902.80
//
Query:       EHU01712.1  [L=101]
Description: phage lysozyme lysis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-14   52.6   1.9    2.4e-13   50.5   1.9    1.8  1  Phage_lysozyme  Phage lysozyme


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   1.9   1.3e-17   2.4e-13      33     108 ..       2      87 ..       1      88 [. 0.91

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.3e-17
                     HHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHH.........HHHTTHHHHHHHHTTCHHHHHHHGGGSSEE.TCCCHHHHHHHH CS
  Phage_lysozyme  33 ktaerkikqyikvkdfepnqqdalvslafnvGkg.........Gkrkastllralnagdwkkacsairkslka.GkelnglknRre 108
                     + ae++i+q++ +  ++++++ a++ + +nvG++            + +t+ ++++a +w+ +c+++ +++++ Gk  +gl+nRr 
      EHU01712.1   2 RHAENCINQNFEGGHMPQSAFEAMTDAGLNVGCTglmwftdsqKRKQRTTIWKKAQAHEWQAMCNRLTDFVNSgGKRSQGLVNRRT 87 
                     579*******************************77777777445567899*********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 921.20
//
Query:       EHU01713.1  [L=145]
Description: hypothetical protein CKS_0153 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00029   20.6   0.2    0.00042   20.1   0.2    1.2  1  DUF2570      Protein of unknown function (DUF2570)
     0.0048   16.6   0.0     0.0064   16.2   0.0    1.1  1  DUF4131      Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
       0.02   14.9   0.3       0.02   14.9   0.3    1.4  2  TarH         Tar ligand binding domain homologue
      0.046   13.5   0.1      0.061   13.2   0.1    1.3  1  DUF4307      Domain of unknown function (DUF4307)
      0.063   13.1   1.3      0.075   12.8   1.3    1.1  1  MAT1         CDK-activating kinase assembly factor MAT1
      0.066   13.2   0.1      0.091   12.7   0.1    1.1  1  FliS_cochap  Flagellar FLiS export co-chaperone, HP1076


Domain annotation for each model (and alignments):
>> DUF2570  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   1.4e-07   0.00042       7     104 ..       8     104 ..       2     107 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.4e-07
     DUF2570   7 laliilgLgvwlwsqsqki.dsLraenkaqaqlieeqqkanqrLteqLeqerqavekqqkianelkakveeekeevktilkqesCakvalPrsvidsik 104
                  al+ l+ g+ lw+  q+  d++r  n+a  + ++   ++  +L       r    + +   ++ +a+ e+ +e ++  +k ++Ca + +P sv +s++
  EHU01713.1   8 CALLALASGGLLWQTHQRGkDAVR--NEALSREVKSNGEVLGELRALTADAREVLAQLRATEQQRNAQGEKRREYMRDAIKDDTCASTVVPASVSNSLQ 104
                 578889999999988777415555..4555566788889999997655555666666666667777788999***********************9986 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.1e-06    0.0064      34     103 ..       5      71 ..       2      84 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
     DUF4131  34 lllllllllallgfalrapqpnandlsqllesgqeviveGvvaslpeltgsgtrfvlevervlsagktkp 103
                 ++l++ll+la++g++++++q++++   + +  ++ev   G+v+ + +     +r vl+   +  ++++++
  EHU01713.1   5 AILCALLALASGGLLWQTHQRGKDAVRNEAL-SREVKSNGEVLGELRALTADAREVLAQ--LRATEQQRN 71 
                 789*********************9999999.9*******8887777766666666663..333333333 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.3   6.5e-06      0.02      14      84 ..       4      75 ..       2      88 .. 0.80
   2 ?   -3.3   0.1       2.4   7.3e+03     136     141 ..     107     112 ..      97     120 .. 0.40

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.5e-06
                XXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHH..HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSS.S CS
        TarH 14 vlallgvLllvsgglglsglsrsndalrevytnrlqqq..aaLaearvsllqaRltLnragiaaladeaeda.k 84
                + +l+++L l+sggl + + +r +da+r+ + +r +++  + L+e r+  ++aR  L +   +a +++++ + +
  EHU01713.1  4 TAILCALLALASGGLLWQTHQRGKDAVRNEALSREVKSngEVLGELRALTADAREVLAQ--LRATEQQRNAQgE 75
                6789999*********************99888844432246****************9..7887777777642 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
                 HHHHHT CS
        TarH 136 iaalea 141
                  aa ++
  EHU01713.1 107 TAAAAN 112
                 222222 PP

>> DUF4307  Domain of unknown function (DUF4307)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     2e-05     0.061       6      79 ..       4      77 ..       1     101 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
     DUF4307  6 villvvlvvvalalvawigysqgsadvsaevvgfevvddstvevtfeVtrddgspavCiVrAldedgaevGrre 79
                 ++l++l+++a +++ w++ ++g++ v+ e ++ ev ++ +v  +++    d +++  ++rA+ ++++  G++ 
  EHU01713.1  4 TAILCALLALASGGLLWQTHQRGKDAVRNEALSREVKSNGEVLGELRALTADAREVLAQLRATEQQRNAQGEKR 77
                6789999999********************************************************99999876 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.3   2.5e-05     0.075     116     181 ..      30      95 ..      20     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
        MAT1 116 eeeeekekkekakeelideLatsskdaeeiiekvkkkakkkkssekekleelnkelkkkatkfssg 181
                   +e+ ++  k++ e++ eL++ ++da+e++++ +++ ++++++ +++ e ++ ++k+ +  +   
  EHU01713.1  30 VRNEALSREVKSNGEVLGELRALTADAREVLAQLRATEQQRNAQGEKRREYMRDAIKDDTCASTVV 95 
                 55677788889999***************************7777777767666666655444433 PP

>> FliS_cochap  Flagellar FLiS export co-chaperone, HP1076
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.1e-05     0.091      19      81 ..      25      87 ..      19      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                 XXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHTTGGGS-HHHHHHHHHHHHHHH CS
  FliS_cochap 19 tqeksrkiekfsedikgaNefiGALQvldialkKllklaksldaeskdqksqvkaelqeiien 81
                   +++ ++e +s+++k+  e +G L  l    + +l   +  +++ + q ++ ++ ++++i++
   EHU01713.1 25 RGKDAVRNEALSREVKSNGEVLGELRALTADAREVLAQLRATEQQRNAQGEKRREYMRDAIKD 87
                 5667889999**************************999999999999***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1224.71
//
Query:       EHU01714.1  [L=156]
Description: phage-related tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-34  118.0   0.0    3.3e-34  117.8   0.0    1.0  1  P2_Phage_GpR  P2 phage tail completion protein R (GpR)


Domain annotation for each model (and alignments):
>> P2_Phage_GpR  P2 phage tail completion protein R (GpR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   1.9e-38   3.3e-34       1     130 [.       1     128 [.       1     129 [. 0.95

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 1.9e-38
  P2_Phage_GpR   1 MlKlqsLraaLtaalpelaanpeklevfvdegelvatgaqslsfeyrYtlvlviedfpgdpdalmvpvlaWlrenqpdllenpekrlagirfdvdil 97 
                   MlK +sLr+ Lt+a ++ +anpe+++vfv+eg++  tg++  sf yrYtlvl++++f gd+d++++p++aWl  nqpdll npek+++ i+f++ i+
    EHU01714.1   1 MLKADSLRETLTRANKWCRANPEAFTVFVEEGNIETTGET-PSFMYRYTLVLFVMNFAGDIDDFTLPLMAWLWHNQPDLLLNPEKNRN-IKFTTLIN 95 
                   9*********************************999765.69***************************************999997.******** PP

  P2_Phage_GpR  98 dddtadlsitieltErvevkededGeitvdgvr 130
                   +ddtad+ ++ +l+Erv+v+ d +G    ++ +
    EHU01714.1  96 NDDTADILFEMPLRERVKVTLDANGIPCAEHLP 128
                   **********************99988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1204.66
//
Query:       EHU01715.1  [L=212]
Description: tail completion protein S [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-26   90.5   2.1    3.3e-13   49.7   0.0    2.1  2  Phage_tail_S  Phage virion morphogenesis family
  ------ inclusion threshold ------
       0.27   11.5   1.6          3    8.1   0.6    2.3  2  DUF3947       Protein of unknown function (DUF3947)


Domain annotation for each model (and alignments):
>> Phage_tail_S  Phage virion morphogenesis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.4   2.6e-14   2.3e-10       4      63 ..       7      68 ..       4      80 .. 0.86
   2 !   49.7   0.0   3.6e-17   3.3e-13      63     147 ..     125     207 ..     114     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.6e-14
  Phage_tail_S  4 qavedalkrllak..ladrrplmraigeeLresqeqrfeaqkdPdGspwkplkdktlaakkg 63
                  ++++++++ +la    a r + +ra+g++Lr+sq+qr++aq+ P+Gsp+ +++++ l++++g
    EHU01715.1  7 RELDQVFSDILAGtsQAGRVRTARAVGQALRKSQQQRIKAQQTPEGSPYPARRRRVLRSQQG 68
                  67888888888886778888999******************************888887765 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 3.6e-17
  Phage_tail_S  63 gkikrggkilrklgrlarslkteatsdsve...vGsnkiyAaiHQfGgkagrdrvskkgkkvtipaRplLGlsdedeeeildillahL 147
                   ++  ++  ++++l r  r+lk++a+s + +    G ++++A++HQ+G+   rd+v + g  +++p R+lLG+++ de++i++ + + L
    EHU01715.1 125 RSTAKKVPMFQRL-RSYRFLKMRADSGGTSvgyDGVAARIARVHQYGQ---RDQVGP-GAFAKYPVRELLGFTAGDERMITEQVVNSL 207
                   33444447*****.*******9999999997788899***********...674444.45789*******************998876 PP

>> DUF3947  Protein of unknown function (DUF3947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.6   0.00033         3      20      48 ..      21      49 ..       9      69 .. 0.76
   2 ?    2.0   0.0     0.028   2.5e+02      14      39 ..     149     174 ..     138     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00033
     DUF3947 20 tlaGaqstvqavqqalqmqqqaqmqqsqi 48
                + aG   t +av qal+  qq +++ +q 
  EHU01715.1 21 SQAGRVRTARAVGQALRKSQQQRIKAQQT 49
                4688899*********9988866655543 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.028
     DUF3947  14 ayGaaitlaGaqstvqavqqalqmqq 39 
                 + G+++ + G  + +  v+q  q  q
  EHU01715.1 149 SGGTSVGYDGVAARIARVHQYGQRDQ 174
                 4689********99999999777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1886.04
//
Query:       EHU01716.1  [L=191]
Description: baseplate assembly protein V [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-36  122.8   0.0    8.2e-36  122.3   0.0    1.2  1  Phage_base_V  Type VI secretion system, phage-baseplate injec
    1.4e-23   82.7   1.4    2.4e-23   81.9   1.4    1.4  1  Phage_spike   Phage spike trimer


Domain annotation for each model (and alignments):
>> Phage_base_V  Type VI secretion system, phage-baseplate injector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   9.2e-40   8.2e-36       1     112 []       3     114 ..       3     114 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 9.2e-40
                   TTHHHHHHHHEEEEEEEEEETTTTEEEEEETTEEXXXEEEXXSXBSSSBXXXXXXTTXEEEEEEXXTTTXXEEEEEEEXXSSSXXSXXBTS-EEEE- CS
  Phage_base_V   1 aeleRrlenlirlGvvaevdlaaarvrvktgdlltdwlrwlaarAGktrswrapsvGEqvvllspsGelatavvlpglysdafpapsnsadaevirf 97 
                   ael R+len++r+Gvv++vd + +rvrv++g+l tdwlrw ++rAG+ + w +psvGEqv l +++G+++tav++ +lys + pap +s ++ v++ 
    EHU01716.1   3 AELIRLLENVLRVGVVIAVDEESWRVRVQSGELQTDWLRWNTTRAGAFNIWVPPSVGEQVWLGCIGGNPETAVIIGSLYSSDHPAPGSSLKEIVLTA 99 
                   699********************************************************************************************** PP

                   TTS-EEEEETTTTEE CS
  Phage_base_V  98 pDGavieYdtaakal 112
                   pDGa+++Yd++a+al
    EHU01716.1 100 PDGASFRYDAEASAL 114
                   ***********9986 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   1.4   2.7e-27   2.4e-23       1      54 []     118     171 ..     118     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2.7e-27
                  E-SEEEEE-SSEEEEESSEEEEEEEEEEEEEEESSEEEEES-EEEESS-EEETT CS
  Phage_spike   1 giktatvkAstsitLdtPevecTgnLtvgtltvqgGGtikGdithsgGnlssnG 54 
                  g+kta++kAs+s+tL+tP vecT++L+  t+++++GGt+kGd+thsgG+lssnG
   EHU01716.1 118 GMKTAHIKASVSVTLETPVVECTDHLKARTFELTEGGTMKGDVTHSGGSLSSNG 171
                  68***************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1773.79
//
Query:       EHU01717.1  [L=122]
Description: phage baseplate assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-09   37.1   0.0    2.4e-09   36.8   0.0    1.1  1  GPW_gp25  Gene 25-like lysozyme


Domain annotation for each model (and alignments):
>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.4e-13   2.4e-09       7      74 ..      22      90 ..      17     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.4e-13
                HHHHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--.CHHHHHHHHHHHHHHHH-TTEEEEEEEE..... CS
    GPW_gp25  7 vrrdleiLLntfpgervsvlnyGlpllallfasls.edreriareireailrfEpRirlvsveveveee 74
                   +++++L+t   +rv++ +yG+ + +ll+++++  +r +  ++   a++ +E Ri+l+ ++++ +++
  EHU01717.1 22 LWNSVRDILTTPLASRVMRRDYGSMIPDLLDEPQNeVTRLQCMSAAVIALTMWESRIALNGINISYSKD 90
                56799******************************99**************************954443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1174.62
//
Query:       EHU01718.1  [L=298]
Description: baseplate assembly protein J [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-24   86.1   2.6    2.7e-24   85.7   1.0    1.9  2  Baseplate_J  Baseplate J-like protein
  ------ inclusion threshold ------
      0.029   14.5   1.3      0.046   13.9   0.3    1.8  2  AIRS_C       AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.078     7e+02     174     206 ..      35      66 ..      16     105 .. 0.72
   2 !   85.7   1.0     3e-28   2.7e-24     111     255 .]     113     258 ..      95     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.078
  Baseplate_J 174 lPtaellakVqayiseglrPvtaevtvlaptek 206
                  +P+ e+ a+V+a+++ +  P++   +v+a  e 
   EHU01718.1  35 FPQ-EQQASVAAALELESEPLNVIAQVVAYREM 66 
                  554.55688999997777899888888886655 PP

  == domain 2  score: 85.7 bits;  conditional E-value: 3e-28
  Baseplate_J 111 diEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwngpGtVkvvilldng.glPtaellakVqayis.eglrPvtaevtvlapte 205
                   +Esd alr R ++a++  + +G++ +Y++ a+++   V +ak +++  +p  V v +l  +g g ++aella+V +++s + +rPv +++tv+a++ 
   EHU01718.1 113 VTESDTALRLRAQAAFEGLSVAGPTGAYEYFAKSAsGKVADAKAISP--SPAVVVVSVLSTEGdGTASAELLATVDKALSaDDKRPVADRLTVQAAEI 208
                  58*********************************888*********..9999999999977779********************************* PP

  Baseplate_J 206 kavnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqieaa 255
                  ++++i+a l + +g+ se + +a+++a+q ++ +++k g+++ +s+i+aa
   EHU01718.1 209 VNYQINALLYFYPGPESEPIHTAAQDALQSWLNQQGKIGRDVARSAIMAA 258
                  ********8899***********************************986 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   5.1e-06     0.046      87     148 ..       2      63 ..       1      69 [. 0.86
   2 ?   -1.9   0.0      0.37   3.3e+03      11      55 ..     168     208 ..     162     216 .. 0.41

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-06
                 EEEECG...THHHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEES CS
      AIRS_C  87 aeidld...kvpifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtak 148
                 a++dl+   +++i++   +++e+ lse   ++l a+p+e+++ v a+le e +p   vI +v+a 
  EHU01718.1   2 ATVDLSqlpQPQIIEV--LDFEVILSEVKAVMLAAFPQEQQASVAAALELESEP-LNVIAQVVAY 63 
                 6788886645555554..69*******************************997.*******985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.37
                 TSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHH CS
      AIRS_C  11 slGlggagtslkrkileeeglddsavqlgdvlleptliyvkrala 55 
                  l + g gt++++ +l++ +  +     +d + +  ++ v +a++
  EHU01718.1 168 VLSTEGDGTASAE-LLATVDKAL---SADDKRPVADRLTVQAAEI 208
                 4444444433322.222222221...2444455555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2432.05
//
Query:       EHU01719.1  [L=204]
Description: tail protein I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-52  176.6   0.1    2.7e-52  176.3   0.1    1.1  1  Tail_P2_I  Phage tail protein (Tail_P2_I)


Domain annotation for each model (and alignments):
>> Tail_P2_I  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.1   1.5e-56   2.7e-52       1     134 [.       6     140 ..       6     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 1.5e-56
   Tail_P2_I   1 LpsnataleralaalaarldklpvpirdlwnpdtcpaelLpwLAwelsvdgWdeawseeakRavikeaielhrlkGTpaavrrvlealgfgveitEWwe 99 
                 Lp++a+ ++r+ +++++rl+++pv +r+lwnpd+cpa+lLp+LAw+lsvd+Wd++wse++kR+vik+++ +hr+kGT++a+rrv+e++gf  +++EWw+
  EHU01719.1   6 LPPSASGFMRSTEKVTERLTDIPVDLRKLWNPDECPADLLPYLAWALSVDRWDKNWSEQTKRQVIKASWLVHRQKGTISALRRVVEPFGFLLRVIEWWQ 104
                 8************************************************************************************************** PP

   Tail_P2_I 100 yr.kpytfkvelevseqgiteeqaaelrrlvaaakp 134
                  + +p+tf++e+ ++eqgitee++ el+rl+++akp
  EHU01719.1 105 SGeEPGTFRLEIGIQEQGITEETYLELERLIDDAKP 140
                 *77********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1620.89
//
Query:       EHU01720.1  [L=326]
Description: hypothetical protein CKS_0160 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-65  217.3   0.3    1.5e-64  216.6   0.3    1.3  1  DUF3751   Phage tail-collar fibre protein


Domain annotation for each model (and alignments):
>> DUF3751  Phage tail-collar fibre protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   0.3   8.2e-69   1.5e-64       1     150 []       1     150 [.       1     150 [. 0.99

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 8.2e-69
     DUF3751   1 maekyytllTnaGeaklaaaqaagkplkltemavGdgnGslpepdesqtalvnevwraavnqlgvdpknpnqvvaelvipeevGgFtireiglfdedgt 99 
                 ma+ky++llTn+G+akla+a+a+g+++++t+mavGdgnG+lp+p+++qtal +e +ra++n l++dp+n nq++ae+vipe+vGg++ireiglfd+dg+
  EHU01720.1   1 MATKYFALLTNIGAAKLANATALGAKVEITQMAVGDGNGALPTPNPAQTALTHELRRAQLNMLTIDPVNTNQIIAEQVIPEDVGGWWIREIGLFDKDGD 99 
                 99************************************************************************************************* PP

     DUF3751 100 LvavanvpetyKpkleegsgneltirlilevsnaaavtlkiDptvvlatrd 150
                 ++avan++etyKp+l+egsg++++ir+il+vs+++avtlkiDp+vvlatr+
  EHU01720.1 100 MIAVANCAETYKPQLQEGSGRVQVIRVILIVSSTEAVTLKIDPSVVLATRK 150
                 *************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2604.91
//
Query:       EHU01721.1  [L=162]
Description: putative tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-38  131.2   0.0    1.7e-38  130.9   0.0    1.1  1  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   9.5e-43   1.7e-38       1     120 []       6     125 ..       6     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 9.5e-43
  Phage_P2_GpU   1 GdfvFelntlafqelqrstsarwaeherlggrpalqfvGpgeetitlsgvlfpeltggreeleaLramaeagealpLvlGtgevlgkwviesisetq 97 
                   G+fvFel+tl++q+l++s ++r+ +++r++++ ++q++G ge++i+l+gvl+pe+tgg+ +l+ L + a +g+++pL++G g+++g++v++ +++t+
    EHU01721.1   6 GMFVFELKTLPYQQLRHSLNWRHVKNDRINRSAKWQYIGAGETQINLDGVLYPEITGGDVSLTVLATQAYTGRPWPLISGAGQIYGMYVLTGLQATH 102
                   89*********************************************************************************************** PP

  Phage_P2_GpU  98 sefladGaarkieftlsLkryde 120
                   +ef++ G+a kief++s++r de
    EHU01721.1 103 TEFDRYGKAKKIEFSISFQRCDE 125
                   ********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1263.31
//
Query:       EHU01722.1  [L=988]
Description: phage-related tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-49  166.3  13.2    7.6e-49  166.3  13.2    4.4  4  PhageMin_Tail  Phage-related minor tail protein
     0.0016   18.2   2.8     0.0016   18.2   2.8    2.8  4  LXG            LXG domain of WXG superfamily
  ------ inclusion threshold ------
      0.087   12.5   0.0        8.9    6.0   0.1    3.4  3  RPW8           Arabidopsis broad-spectrum mildew resistance p
       0.15   11.7   6.6       0.46   10.1   6.6    1.9  1  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
       0.31    8.9   2.4       0.49    8.3   2.4    1.2  1  V_ATPase_I     V-type ATPase 116kDa subunit family
       0.37   10.8   8.6       0.99    9.4   0.4    4.2  4  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
       0.43    9.1   5.2        2.5    6.6   2.6    2.4  2  FapA           Flagellar Assembly Protein A
       0.48    9.3   6.0        2.6    6.9   2.7    2.4  2  Vps53_N        Vps53-like, N-terminal
       0.59   10.6  11.9         11    6.6   0.1    5.3  6  NPV_P10        Nucleopolyhedrovirus P10 protein
       0.61   10.4   5.9       0.19   12.0   0.8    2.7  2  V-SNARE_C      Snare region anchored in the vesicle membrane 
       0.81    9.6   4.0        6.2    6.7   0.6    3.3  3  Sec8_exocyst   Sec8 exocyst complex component specific domain
          1    9.1  15.5       0.27   11.0   6.8    3.0  3  FAM184         Family with sequence similarity 184, A and B
        1.2    8.6  26.0       0.23   11.0  21.4    2.1  2  MscS_porin     Mechanosensitive ion channel porin domain
        1.7    8.0  12.4        4.3    6.7  12.4    1.6  1  Golgin_A5      Golgin subfamily A member 5
        9.9    5.3   5.3        9.2    5.4   0.2    2.1  2  TMPIT          TMPIT-like protein


Domain annotation for each model (and alignments):
>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   4.6      0.88   1.1e+03      56     187 ..      22     152 ..       2     164 .. 0.48
   2 !  166.3  13.2   6.4e-52   7.6e-49       2     198 .]     229     427 ..     228     427 .. 0.98
   3 ?    5.6   4.2      0.01        12     129     186 ..     425     480 ..     423     509 .. 0.82
   4 ?   -2.2   0.0       2.6   3.1e+03     179     192 ..     797     810 ..     715     813 .. 0.47

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.88
  PhageMin_Tail  56 eaaeilstalnafglsaadaeeaaDvlaaaanngatsvedlaealkevgavakaaGlsfee.......taaalallaaagikgseAgtalknllsr 144
                     a ++++ + + ++++ +++ + +D  ++++n+  +sv+  +  +  ++ +  +++ +  e       + a +a+laa+ +  + A t   + + +
     EHU01722.1  22 AARQSAGGLSESLKKT-QSSIKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEGLNQTQREgtqltdkQKAHMAALAAKLERLNSART---QEMVK 113
                    4444444444555555.33334445555555555555555555555555555555555555444444433333333332222222222...22222 PP

  PhageMin_Tail 145 ltkeaaealkklGistkdaqgkmksldeiledlsealkkltda 187
                    l  +a++al++ G+s     g  ++ + ++  + +  ++l+ +
     EHU01722.1 114 L-RAASQALRSHGVSL---VGSDRTIQSAIRRTEQYNQTLERE 152
                    3.36666666667553...355566666666666655555555 PP

  == domain 2  score: 166.3 bits;  conditional E-value: 6.4e-52
  PhageMin_Tail   2 dlakelgektkysatelaealeelasaGvsteeilnllegaaklataggaddleeaaeilstalnafglsaadaeeaaDvlaaaanngatsvedla 97 
                    ++ak+lg++t++++t++a++++ la+aG++ + i+++l+g++++a agg+d l+e+a+i s++l++f+l+ +++++++Dvl++a+ +++t++++++
     EHU01722.1 229 EQAKKLGAETQFTTTDAASGQAFLAMAGFTPQAIQAALPGVLNMALAGGMD-LGESADISSNILSQFRLDPKEMDRVSDVLTGAFTRTNTDLQNIG 323
                    79***********************************************77.******************77************************ PP

  PhageMin_Tail  98 ealkevgavakaaGlsfeetaaalallaaagikgseAgtalknllsrl...tkeaaealkklGistkdaqgkmksldeiledlsealkkltdaqra 190
                    ea+k++g+  +++G+s e+t+a+++++a+ g+ gs Agt+l++++srl   t +a+ alk+lG+++ da+gkm++++e+l +l ++++k  d+++ 
     EHU01722.1 324 EAMKYAGTGLSSLGVSVEQTTAMIGVMANVGLRGSIAGTGLQAAFSRLaapTGRAKTALKELGVDVADATGKMRPAEEVLTELYKKISKYGDTDKL 419
                    ************************************************99888******************************************* PP

  PhageMin_Tail 191 aalstlfG 198
                    ++++++ G
     EHU01722.1 420 SFFKDIAG 427
                    **999987 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.01
  PhageMin_Tail 129 ikgseAgtalknllsrltkeaaealkklGistkdaqgkm.ksldeiledlsealkkltd 186
                    i g+eA  +l++l+++    + e++k lG + k+a+g++ k ++ + ++l   lk+l++
     EHU01722.1 425 IAGEEASKSLQALVMSA--GSGELQKLLG-ELKNAKGEAqKAAKIMADNLDGDLKNLDS 480
                    789************99..9999999999.88899988845555555667777777755 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.6
  PhageMin_Tail 179 ealkkltdaqraaa 192
                    +a kk++daqr+a+
     EHU01722.1 797 KARKKIEDAQRMAV 810
                    24455555555555 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.8   1.4e-06    0.0016     104     195 ..      16     109 ..       5     113 .. 0.88
   2 ?   -1.9   0.1       1.9   2.3e+03      12      32 ..     142     162 ..     133     181 .. 0.52
   3 ?   -3.2   0.0       4.6   5.5e+03     172     194 ..     714     736 ..     692     747 .. 0.67
   4 ?   -4.0   0.1       8.3   9.9e+03     157     176 ..     852     871 ..     851     872 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.4e-06
         LXG 104 lenglkkakevteelkdeinkilasvsdivslpelddsevkdslqkakkkvqe...tiekledfdqeqksalanlesdlkalktyvseLeemtsk 195
                 l + ++ a+++   l ++++k+ +s++d+ + ++++ ++++ds+qk  +k+++   t+e+l++  +e++++++++++ ++al++ +++L+++ ++
  EHU01722.1  16 LTRPVNAARQSAGGLSESLKKTQSSIKDL-DSQSRTFNRLRDSVQKTSRKIDDasrTLEGLNQTQREGTQLTDKQKAHMAALAAKLERLNSARTQ 109
                 56667889999999**************9.***************99888765333899999999999**********************99876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
         LXG  12 ieqlkseleelkeqleqlkka 32 
                  eq +++le+++ ql  + +a
  EHU01722.1 142 TEQYNQTLERERRQLAAVTQA 162
                 344444444444444444443 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.6
         LXG 172 lanlesdlkalktyvseLeemts 194
                 +a+    ++a+++++s++ ++++
  EHU01722.1 714 FAQFSPIFDAMSNGISQVFNWFK 736
                 44555555666666666666654 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 8.3
         LXG 157 tiekledfdqeqksalanle 176
                 t++ l+ +d ++k+  +n++
  EHU01722.1 852 TMRRLQSIDSNTKTTADNTK 871
                 78999999999999988875 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0075       8.9      26      81 ..      33      88 ..       6     108 .. 0.88
   2 ?   -3.1   0.0       4.7   5.6e+03      44      68 ..     135     159 ..     132     173 .. 0.63
   3 ?    2.2   0.0      0.11   1.3e+02      11      85 ..     698     776 ..     694     783 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0075
        RPW8 26 ksldfksilkrLestleritPvvkeieklnkeldrpreeieeLkklLekaekLVek 81
                  ++++s++k+L+s   + + +++ ++k + ++d     +e L+++ +++ +L  k
  EHU01722.1 33 SLKKTQSSIKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEGLNQTQREGTQLTDK 88
                45789999999999999999999999999999988888999999999999999776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.7
        RPW8  44 itPvvkeieklnkeldrpreeieeL 68 
                 i+  + + e+ n+ l+r+r ++   
  EHU01722.1 135 IQSAIRRTEQYNQTLERERRQLAAV 159
                 5556666666676666666665544 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
        RPW8  11 aalgellkaileakkksldfksilkrLestleri....tPvvkeieklnkeldrpreeieeLkklLekaekLVekcskl 85 
                  ++  +++ +   +++ ++f++i++ + + ++++    + ++  +e+ ++ ld++ +  e + + L  a +LV + +k+
  EHU01722.1 698 GVFTGIMERLAPLRETFAQFSPIFDAMSNGISQVfnwfKSLLSPMESSKETLDKCASAGEVFGNVLGGALQLVLAPAKM 776
                 5666666666667777788888888888877777222244455578888888888888888888888888888777765 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.6   0.00038      0.46      20     128 ..      35     156 ..      21     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00038
  PI3K_P85_iSH2  20 revs...kqlqekskeydqlkeeynkiseeiqlkrqaleaFneaikmFeeqiklqekfskea.............qehEieklqenleqlksrlke 99 
                    ++++   k+l  +s+++++l ++ +k+s  i+    +le  n +    +e  +l +k +  +               +E  kl   ++ l+s+  +
     EHU01722.1  35 KKTQssiKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEGLNQTQ---REGTQLTDKQKAHMaalaaklerlnsaRTQEMVKLRAASQALRSHGVS 127
                    333311144555666666666666666666666666666555554...5777777776666655666666555555******************** PP

  PI3K_P85_iSH2 100 lhsskekLeedlkqqkeeereleReinal 128
                    l  s + ++ +++ + +++++leRe  +l
     EHU01722.1 128 LVGSDRTIQSAIRRTEQYNQTLERERRQL 156
                    ************************98776 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.4   0.00041      0.49      10     128 ..      40     168 ..      34     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00041
  V_ATPase_I  10 qfrDlnedvnafqr...kfvkevrrcdemerklrfleeeieklekavikeeea.......eesleapeekeldeleeelekleeelkelnenleklkke 98 
                  ++Dl+++ ++f+r   +  k  r++d+ +r+l+ l+++ ++ ++ + k++ +        e+l++++++e+ +l +  + l ++  +l  + +++++ 
  EHU01722.1  40 SIKDLDSQSRTFNRlrdSVQKTSRKIDDASRTLEGLNQTQREGTQLTDKQKAHmaalaakLERLNSARTQEMVKLRAASQALRSHGVSLVGSDRTIQSA 138
                 568888888888874444566778999999999999988877555555554447777777777777788888888888888888888888888888888 PP

  V_ATPase_I  99 lnelvelkavlekakefleeeeeeeeeees 128
                  ++ +++++ le+ ++ l++ ++ +++  +
  EHU01722.1 139 IRRTEQYNQTLERERRQLAAVTQARARYDQ 168
                 888888888887777777654333332222 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.5      0.33   3.9e+02      47      91 ..      41      76 ..       4     139 .. 0.52
   2 ?   -1.0   0.0       1.4   1.7e+03      76     111 ..     301     336 ..     283     351 .. 0.73
   3 ?    9.4   0.4   0.00083      0.99      32     103 ..     438     513 ..     428     536 .. 0.74
   4 ?   -2.2   0.0       3.3   3.9e+03      31      63 ..     712     744 ..     699     755 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.33
  Baculo_PEP_C 47 LnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnln 91
                  +++l+++ +   + l++ +++++ +++da  +l+        +ln
    EHU01722.1 41 IKDLDSQSRT-FNRLRDSVQKTSRKIDDASRTLE--------GLN 76
                  2222222111.22222233333333333322222........222 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
  Baculo_PEP_C  76 lnalqdtlrneLtnlnsiltnLlssvtNinstLnnl 111
                   + +++d l+ + t +n++l n+   +    + L++l
    EHU01722.1 301 MDRVSDVLTGAFTRTNTDLQNIGEAMKYAGTGLSSL 336
                   556778888888888888888776666555555555 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00083
  Baculo_PEP_C  32 ilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq....dtlrneLtnlnsiltnLlssvtN 103
                   ++++ +  l+++ ++L++ + + +++ + ++++ld  l+nL++a   +     d ++n+L +l++ l++ + ++t 
    EHU01722.1 438 VMSAGSGELQKLLGELKNAKGEAQKAAKIMADNLDGDLKNLDSAWEGFRiqinDLVNNQLRGLTQGLSDVVGNMTQ 513
                   4455555667777778888888888888888888888888888877443335499999999999999988888775 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.3
  Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldt 63 
                   ++ aq + ++da+ + ++++ + +ksll+ +++
    EHU01722.1 712 ETFAQFSPIFDAMSNGISQVFNWFKSLLSPMES 744
                   344888888888888888888888888876665 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.6    0.0021       2.5     343     411 ..      31      99 ..      17     176 .. 0.60
   2 ?    2.4   0.0     0.039        47     297     434 ..     356     492 ..     337     502 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
        FapA 343 eeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                  e l+++++++++l+++ + ++ l+ + q +s+k ++  ++le +++ ++e ++l++++k+  + l+ k
  EHU01722.1  31 SESLKKTQSSIKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEGLNQTQREGTQLTDKQKAHMAALAAK 99 
                 445555555555555553333333334455555555555555555555555555555554444433333 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.039
        FapA 297 kgkivggnikalkevkakklGselgtkteiev.gldepelkeklkeleeeleeleeeleklkkk..ikklpklkaekqlesekkeqlkklletkeklke 392
                 +g+i g+ ++a+ +  a     +   kt ++  g+d  ++  k++  ee l el +++ k+ ++  ++ +++++ e++ +s +   +     +++kl  
  EHU01722.1 356 RGSIAGTGLQAAFSRLAAP---TGRAKTALKElGVDVADATGKMRPAEEVLTELYKKISKYGDTdkLSFFKDIAGEEASKSLQALVMSAGSGELQKLLG 451
                 4666665555554444442...34466666666999999999999999999999999999999866666666555555444444444444555566666 PP

        FapA 393 eleeleeelkelkeeleskkeeakikvnkeiypgvkikigkk 434
                 el++ + e ++  + +++   ++ +k  + ++ g +i+i++ 
  EHU01722.1 452 ELKNAKGEAQKAAKIMADN-LDGDLKNLDSAWEGFRIQINDL 492
                 6666666666666666666.7889999999999999999865 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.7    0.0021       2.6      16     101 ..      23     107 ..       7     172 .. 0.82
   2 ?    3.2   0.1      0.03        36      25     103 ..     401     484 ..     395     514 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0021
     Vps53_N  16 teqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiAK 101
                   qs  ++ e +kk q +ik ld + ++  r + +  +k+ +++++a +++e l q  +e  + ++k ++ +  ++  + +L  A+
  EHU01722.1  23 ARQSAGGLSESLKKTQSSIKDLDSQSRTFNRLRDS-VQKTSRKIDDASRTLEGLNQTQREGTQLTDKQKAHMAALAAKLERLNSAR 107
                 568999999999*****************999985.5677899*************999999999999999999999998888886 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.03
     Vps53_N  25 elikklqeeikkl.ddeiksvvraqanvgekgkealeeaqka.....ieelfqkikeikdkaeksee.mvkeitrdIkqLDiAKkn 103
                 e++ +l ++i+k  d ++ s  ++ a  ge++ ++l+ +  +     +++l+ ++k+ k  a+k+ + m  ++  d+k+LD A   
  EHU01722.1 401 EVLTELYKKISKYgDTDKLSFFKDIA--GEEASKSLQALVMSagsgeLQKLLGELKNAKGEAQKAAKiMADNLDGDLKNLDSAWEG 484
                 55566666666652333334444333..5555555554433222233899**********9999876256799********99665 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0091        11      11      60 ..      11      60 ..       4      62 .. 0.88
   2 ?    5.2   0.6     0.024        28       9      62 ..      54     104 ..      52     114 .. 0.77
   3 ?   -2.3   0.0       5.6   6.6e+03      29      55 ..     134     160 ..     111     169 .. 0.75
   4 ?    5.4   0.0     0.021        26       2      60 ..     287     342 ..     286     351 .. 0.79
   5 ?   -2.0   0.0       4.4   5.2e+03      22      54 ..     477     507 ..     468     516 .. 0.60
   6 ?    0.1   0.3      0.99   1.2e+03      14      33 ..     809     828 ..     800     836 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0091
     NPV_P10 11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60
                ++i ++   V+a  q+   ++e l++++   + Ld+qs + + l ++v++
  EHU01722.1 11 SAIDKLTRPVNAARQSAGGLSESLKKTQSSIKDLDSQSRTFNRLRDSVQK 60
                578888889999999999********9999999************99986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.024
     NPV_P10   9 IradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                  r+ +++++ k+d  +  ++ +++  ++ t+l++k   q a +a+l +k+e  +
  EHU01722.1  54 LRDSVQKTSRKIDDASRTLEGLNQTQREGTQLTDK---QKAHMAALAAKLERLN 104
                 6999******************9999998877765...5555555555555554 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.6
     NPV_P10  29 dvqenlpdvtelnekLdaqsaqLaele 55 
                  +q+ ++ +++ n+ L++   qLa++ 
  EHU01722.1 134 TIQSAIRRTEQYNQTLERERRQLAAVT 160
                 567777788888888999888888876 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.021
     NPV_P10   2 SqniLlvIradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60 
                 S niL + r d k++d   d+l  + ++ +++l+++    e +    + L +l  +ve+
  EHU01722.1 287 SSNILSQFRLDPKEMDRVSDVLTGAFTRTNTDLQNI---GEAMKYAGTGLSSLGVSVEQ 342
                 88********************************95...45566555666666555555 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.4
     NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLael 54 
                  l+++ +  + +++d   +n++L ++++ L ++
  EHU01722.1 477 NLDSAWEGFRIQIND--LVNNQLRGLTQGLSDV 507
                 455555555555555..5577777777777665 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.99
     NPV_P10  14 kavddkVdalqqqvddvqen 33 
                 + ++dkV  lq  +++v+ +
  EHU01722.1 809 AVLQDKVALLQGDIAKVAPK 828
                 56788888888888887655 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00016      0.19      13      61 ..      26      74 ..      14      77 .. 0.86
   2 ?   -0.8   0.0       1.6   1.9e+03       2      17 ..     794     809 ..     793     815 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
   V-SNARE_C 13 ShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrs 61
                S  ++ e +   ++ + dL+sQ  t++r r+ ++ ++ +++ ++++L  
  EHU01722.1 26 SAGGLSESLKKTQSSIKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEG 74
                55566777788888899*****************************976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
   V-SNARE_C   2 rllresdrlknShriv 17 
                 + ++++ ++++++r++
  EHU01722.1 794 EAEKARKKIEDAQRMA 809
                 568999********98 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.6    0.0052       6.2      75     122 ..      35      85 ..      11     103 .. 0.75
   2 ?    1.8   0.2      0.17   2.1e+02      84     124 ..     131     171 ..     119     177 .. 0.85
   3 ?   -1.8   0.0       2.1   2.6e+03      83     119 ..     377     413 ..     366     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0052
  Sec8_exocyst  75 skilssiqe..sq.ekvselKesleeakkklstkkkeLkelnarsakykev 122
                   +k++ssi++  sq ++ + l++s++++ +k+ + + +L+ ln++ ++ +++
    EHU01722.1  35 KKTQSSIKDldSQsRTFNRLRDSVQKTSRKIDDASRTLEGLNQTQREGTQL 85 
                   4555555532244045678***********************998876665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.17
  Sec8_exocyst  84 sqekvselKesleeakkklstkkkeLkelnarsakykevie 124
                   s ++++   ++ e+ ++ l++++ +L  + +  a+y+++ +
    EHU01722.1 131 SDRTIQSAIRRTEQYNQTLERERRQLAAVTQARARYDQMQQ 171
                   6677777778889999**********************976 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.1
  Sec8_exocyst  83 esqekvselKesleeakkklstkkkeLkelnarsaky 119
                    +++ ++el  ++++a+ k+   ++ L+el ++ +ky
    EHU01722.1 377 RAKTALKELGVDVADATGKMRPAEEVLTELYKKISKY 413
                   677888889999999***************9999988 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   6.8   0.00023      0.27     110     192 ..      42     129 ..      24     144 .. 0.83
   2 ?   -0.7   0.2      0.87     1e+03      52      84 ..     136     167 ..     127     176 .. 0.47
   3 ?    2.5   0.1     0.089   1.1e+02     128     193 ..     428     494 ..     383     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
      FAM184 110 rkFeeklrqfaqlqeqle......qekekaLeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeveelekekkklv 192
                 ++ + ++r+f+ l+  ++       + ++ Le l+++ ++e  +L ++q+a+ + l++  e+l+++  +e++kl+++ ++l++    lv
  EHU01722.1  42 KDLDSQSRTFNRLRDSVQktsrkiDDASRTLEGLNQT-QREGTQLTDKQKAHMAALAAKLERLNSARTQEMVKLRAASQALRSHGVSLV 129
                 456667777777776666555555888899******9.99*****************************************99877766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.87
      FAM184  52 kqkiaeleesleqhekekrqalaefeqykrrve 84 
                 +  i   e+  ++ e+e+rq  a   q + r +
  EHU01722.1 136 QSAIRRTEQYNQTLERERRQLAAVT-QARARYD 167
                 4444444555555555555433322.3333333 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.089
      FAM184 128 qekekaLeelrkk.hreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeveelekekkklve 193
                 +e +k+L+ l ++  + e+++Ll e ++ + +++k ++ ++++++ ++++l  + e ++ + + lv+
  EHU01722.1 428 EEASKSLQALVMSaGSGELQKLLGELKNAKGEAQKAAKIMADNLDGDLKNLDSAWEGFRIQINDLVN 494
                 67788888887651478***********************************999988888777766 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  21.4    0.0002      0.23      19     160 ..      31     173 ..      14     177 .. 0.95
   2 ?   -2.7   0.1       2.8   3.4e+03      31      63 ..     216     234 ..     211     248 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
  MscS_porin  19 lqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqeleal.qkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrpe 116
                  ++L+++++ +++ d +    + l++++++  ++++++++ le l q + e +  ++ +k  +++L  +l+  +s+  ++  +l  + + l++   ++ 
  EHU01722.1  31 SESLKKTQSSIKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEGLnQTQREGTQLTDKQKAHMAALAAKLERLNSARTQEMVKLRAASQALRSHGVSLV 129
                 689******************************************999999999********************************************* PP

  MscS_porin 117 raqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaa 160
                     ++ +a +r+++ ++ L+  + + +a++qa+    q+++ a
  EHU01722.1 130 GSDRTIQSAIRRTEQYNQTLERERRQLAAVTQARARYDQMQQTA 173
                 ********************999888889999999999999877 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
  MscS_porin  31 kidkskkkaeelqkaiddaPkelrelqqeleal 63 
                                id++ +e  +l+++ ++l
  EHU01722.1 216 R--------------IDKSSAEFSALREQAKKL 234
                 3..............444445555555555555 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  12.4    0.0036       4.3      35     167 ..      30     168 ..      20     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0036
   Golgin_A5  35 geeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqe...leeqleeerkakeeveaelerlkeelryleeel 130
                  +e+l+ ++ + ++ld+ ++  + lr+++qk++ +i++    l+ l++ q + ++ + +q ++   l  +le  ++a+ +   +l+  ++ lr+    l
  EHU01722.1  30 LSESLKKTQSSIKDLDSQSRTFNRLRDSVQKTSRKIDDASRTLEGLNQTQREGTQLTDKQKAHmaaLAAKLERLNSARTQEMVKLRAASQALRSHGVSL 128
                 56777777889999*******************************9998877776665555441115566777778888888899999*********** PP

   Golgin_A5 131 vrskatlqsrikdre...keieklrnqlttkslssssese 167
                 v s  t+qs i++ e   + +e+ r+ql+  ++  +  ++
  EHU01722.1 129 VGSDRTIQSAIRRTEqynQTLERERRQLAAVTQARARYDQ 168
                 ********999877622268999*****999988765555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0077       9.2      29      89 ..      10      72 ..       5      77 .. 0.87
   2 ?    5.0   2.9      0.01        12       4      64 ..      51     111 ..      48     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0077
       TMPIT 29 sklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesll 89
                ++ ++k+++ ++  ++ +  l++slkk+++s+k  +++++++++l+++++++++ +++ + +l
  EHU01722.1 10 FSAIDKLTRPVNAARQSAGGLSESLKKTQSSIKdlDSQSRTFNRLRDSVQKTSRKIDDASRTL 72
                677889999999999***************988677888899***********9999998887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
       TMPIT   4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeee 64 
                 +++l++++++ + + +   ++le l++ q + ++ ++kqk ++ +l ++l++l+++ ++e 
  EHU01722.1  51 FNRLRDSVQKTSRKIDDASRTLEGLNQTQREGTQLTDKQKAHMAALAAKLERLNSARTQEM 111
                 6789999999999999999**********************************99854332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1375  (0.0766914); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.02u 0.30s 00:00:01.32 Elapsed: 00:00:00.46
# Mc/sec: 6471.54
//
Query:       EHU01723.1  [L=105]
Description: putative phage tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-06   28.1   0.3    2.3e-06   27.6   0.3    1.2  1  Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41


Domain annotation for each model (and alignments):
>> Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41 or 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   1.3e-10   2.3e-06       2      82 ..       9      89 ..       8      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-10
  Phage_TAC_7  2 itLkkPievdGetyteltL.Rep.tvkDlraaqlvkegkpdadllmgaeialiarlsg..lppedlekLdlaDlarlqervagfl 82
                 itL+kP+ +++e++t++ +  e  +++ lr+++lv+ +++d+d      ++l+ r++   l + +++++d++D+  l+e++  fl
   EHU01723.1  9 ITLAKPVVRGDEKITQVAItDEIkQAGSLRGLKLVNVMNMDVD----SVAVLLTRVTSprLKQTEINEMDTRDFVSLSEALVPFL 89
                 9******************433213555555559999999999....789999999999*********************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 757.76
//
Query:       EHU01724.1  [L=171]
Description: major tail tube protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-50  169.2   0.0    6.4e-50  169.1   0.0    1.0  1  Phage_tube  Phage tail tube protein FII


Domain annotation for each model (and alignments):
>> Phage_tube  Phage tail tube protein FII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.1   0.0   3.6e-54   6.4e-50       1     161 [.       4     162 ..       4     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 169.1 bits;  conditional E-value: 3.6e-54
  Phage_tube   1 prklknfnvyvdgnsylGrveevtlPkltrkteeyrggGmagevevdlggelealeleiklggldeevlklflakgkavqlrfrgalqredtaeekave 99 
                 p+kl+ f+++v+g++++G+v++vtlPkltrkte+++ggGm+g+++vdlg++ +al++++ +ggl +++l  +  +++++++rf+g++ +++++    ve
  EHU01724.1   4 PHKLRLFTCFVNGSNCIGKVSSVTLPKLTRKTEDFQGGGMIGSAAVDLGLDSGALDTTMVVGGLVQSLLLNYCGDIDETRFRFAGEYYTDGES--LLVE 100
                 79*****************************************************************************************77..**** PP

  Phage_tube 100 vvvrgrvkeidlGkakagektetkvtlavtyykltvdGkelleiDvlnmiykvnGvDllaev 161
                 v++rgr++e+d G++k+ge+t++++t+++tyyklt+d+k+l+e+D ln+iyk +G++++ + 
  EHU01724.1 101 VELRGRITEMDGGESKQGEDTSVSYTMKNTYYKLTIDDKPLFEFDLLNFIYKKDGKNIYPDR 162
                 *********************************************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1379.58
//
Query:       EHU01725.1  [L=408]
Description: FI family phage tail sheath protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-23   84.0   0.4    1.8e-23   83.2   0.1    1.5  2  Phage_sheath_1   Phage tail sheath protein subtilisin-like do
    6.1e-09   35.8   0.0    1.1e-08   34.9   0.0    1.5  1  Phage_sheath_1C  Phage tail sheath C-terminal domain
  ------ inclusion threshold ------
      0.074   13.6   0.0        2.5    8.7   0.0    2.8  3  DUF2482          Hypothetical protein of unknown function (DU


Domain annotation for each model (and alignments):
>> Phage_sheath_1  Phage tail sheath protein subtilisin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.3     8e+03       5      30 ..      29      55 ..      27      64 .. 0.67
   2 !   83.2   0.1     3e-27   1.8e-23       3     166 ..     128     290 ..     123     292 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
                    HHHHHHHHHHGTTS--SEEE-GG.GTC CS
  Phage_sheath_1  5 nedylaaldalegekfnlliapg.dda 30
                    n d++ a++ +e+  + ++++   +da
      EHU01725.1 29 NTDLVTAINDIESSVIGVVAVADdADA 55
                    677777888887777777777774344 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 3e-27
                     --HHHHHHHHHHGTTS--SEEE-GGGTCS-HHHHHHHHHHHHHHHHHCH-SSEEEEES-HHHHSSS.HHHHHCTTTTEEEE--EEEETTSSEEEH CS
  Phage_sheath_1   3 vtnedylaaldalegekfnlliapgddaednevatevqafakrsrenegldaiaviappgtttieqaaarakadnegiinvsstyaaldgpeitq 97 
                     +t++ + + ++   g+ +++l++pg   +++ev +++  +a+       l+a+++++ +g++t ++a a++        +++ ++++l +p++ +
      EHU01725.1 128 YTGMYAFLTAEQKVGYRPRILAVPG--YDTEEVTSALCVIAQ------NLRAFVYASCYGCKTMAEATAYRA-------TFAYRELMLIWPDFIA 207
                     555555555555589**********..55569*******999......9***********************.......**************** PP

                     H..........HHHHHHHHHHHHSTTT--STT....-B-TTEEEESSS..--HHH....HHHHHHTTEB-EEEETTTEEEES--B CS
  Phage_sheath_1  98 y..........paaawvAGlcAradveqswtarpsngevkgaldlaie..ltqee....rdllleaGintltvdagdgvrvegdi 166
                     y          pa a+++Gl+A +d +q+w++++sn+ v+++l+++ +  ++ +     +++l+++ ++tl+++  +g+r++g++
      EHU01725.1 208 YnpltgenetfPAPAYACGLRALIDNNQGWHKSLSNVSVSNVLGISQDvfWSLQAedsdANELNNKEVTTLIKR--NGFRFWGNR 290
                     **************************************************555555666***************..*******98 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.9e-12   1.1e-08       2     103 ..     293     393 ..     292     394 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.9e-12
                      S-GGGGBHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTSB-S--STTSEEEEC.SSSSTTEEEEEEEE-BSSSS CS
  Phage_sheath_1C   2 kdedfkkievirtldllrddirstfkkkylgkklnnddgralvksalnaylkelqregaienfdnksdlevea.kntdkdrlvvkinvkpvnsm 94 
                      +++d+ +  ++rt ++l+d+i+++  +   ++++ ++ ++++v s ++  l+ l+ +g + + +++ d+  ++ ++  ++++ + ++++pv++m
       EHU01725.1 293 DTKDYIFEVYTRTAQILADSIAEAQFE--SVDEPLTPANVKDVVSGISGKLNSLVTQGRLIGAECWFDILDNPtTGLRQGQVRIRYKYTPVPPM 384
                      6889999999*************9888..9***************************************9999899****************** PP

                      S-EEEEEEE CS
  Phage_sheath_1C  95 eklyftiev 103
                      e+l++ +++
       EHU01725.1 385 EDLTLYQTF 393
                      ***987665 PP

>> DUF2482  Hypothetical protein of unknown function (DUF2482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.86   5.2e+03       5      31 ..      15      41 ..      13      53 .. 0.77
   2 ?    8.7   0.0   0.00041       2.5      17      61 ..      77     121 ..      68     127 .. 0.88
   3 ?    0.9   0.0      0.11   6.8e+02       9      50 ..     328     372 ..     324     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.86
     DUF2482  5 dmtqeeikdllaeKskeLyelieeike 31
                +m++   + +    +++L   i++i+ 
  EHU01725.1 15 NMSETRFHGVRVRENTDLVTAINDIES 41
                777777888877888888888888864 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00041
     DUF2482  17 eKskeLyelieeikeetdFdillfsaigvsdgdaqvsssslvvGk 61 
                  K ++Ly++ + i ++t  +++++   + ++++   ++s+l++G 
  EHU01725.1  77 GKTGSLYKTLKAIADQTSPKVIVVRVAAATEEEGAKTQSQLIMGG 121
                 599******************999999988888899999999996 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.11
     DUF2482   9 eeikdllaeKskeLyeliee...ikeetdFdillfsaigvsdgda 50 
                  ++kd+++  s++L  l+ +   i  e  Fdil + + g+ +g++
  EHU01725.1 328 ANVKDVVSGISGKLNSLVTQgrlIGAECWFDILDNPTTGLRQGQV 372
                 5789999998998888887655699999****9999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3421.20
//
Query:       EHU01726.1  [L=378]
Description: phage late control gene D protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-25   89.8   0.1    2.3e-25   89.5   0.1    1.1  1  Phage_GPD  Phage late control gene D protein (GPD)


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.1   1.3e-29   2.3e-25      17     303 ..      68     358 ..      54     359 .. 0.76

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.3e-29
   Phage_GPD  17 sdadldlkallgqpvtvsielddgskrvihGlvteaeqvgadgrlarYrltlrPwlwll..tlr.rdsriFqnktvpdIleavlaehgiavekrfrler 112
                 ++++  + + +g+++ vs ++  g++    Gl t  e v ++g   ++++ + ++ + +    +  ++ ++++ tv+ +++a++ ++g + +    +++
  EHU01726.1  68 DSDGMVALPPRGAELAVSFGW-LGEPLIYKGLYTVDE-VSHEGP--ADTIGVTARSADFreEFNvKREVSWHDVTVERVVSAIAHRYGLKAQ----ISE 158
                 555666666777777777765.555666666655433.344333..566777777777733333356667***************8755552....444 PP

   Phage_GPD 113 s..ypkreycvQyrESdlaFvsRLleeeGifyffehedgshtLvladassalppsaggpsiryhrqsgteaereaitrfaearrlapgkvtlrdydy.. 207
                     + +++ +Q++ESd+ F++R++e  G   +++     + L++   +++   +a g++++  + ++t++   + +rf++a+r a++ v++ + d   
  EHU01726.1 159 MlmDIEIDHADQTQESDMSFLTRMAEMLGAIATVKN----GSLLFILPGGG--VTADGKALPSASIDRTSG---DRHRFRIADRDAYTGVRAYWLDLnf 248
                 3567******************************99....66777777777..4567*******9999988...899*************999999855 PP

   Phage_GPD 208 .kkpkad...........lsaeaaqpr.......aaasalevydypgdyaskaegerlarlrlealrararrfsg..esnvrglapGrtftlsghprka 285
                  k    +           ++ e+   +        + +++ vy  + +y+++++++r+a +++++l++ a++fs+  + ++++l+p++ +t+sg+  ++
  EHU01726.1 249 gK---KKkvsvkrrkpakPKKEK---SssregdyMEGADGNVYVLRKTYQNEEAAKRAAAAKWQQLQRGAAEFSItlARGRAELYPEMHVTVSGFK-DE 340
                 53...333335566655522222...023356775556799999999***************************999999**************76.89 PP

   Phage_GPD 286 aanreylitsvehhgenn 303
                   n+++ i ++eh + ++
  EHU01726.1 341 IDNQDWIIARAEHVIDDS 358
                 8999*********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2855.82
//
Query:       EHU01727.1  [L=73]
Description: bacteriophage regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   38.2   2.9    1.3e-09   37.9   2.9    1.1  1  Ogr_Delta  Ogr/Delta-like zinc finger


Domain annotation for each model (and alignments):
>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   2.9   7.1e-14   1.3e-09       9      47 .]       2      40 ..       1      40 [. 0.96

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 7.1e-14
   Ogr_Delta  9 aaartsrnlskdvreryyqCsnfeCgatfvaaeeierti 47
                a++rtsr ++ ++ + y+qC+n+eC+ +f++ +++er +
  EHU01727.1  2 ARTRTSRKITDMTIRQYHQCQNLECSRSFTTLNSVEREV 40
                89**********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 573.29
//
Query:       EHU01728.1  [L=838]
Description: copper transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-52  175.9   2.2    5.6e-51  172.6   1.4    2.4  2  E1-E2_ATPase  E1-E2 ATPase
    1.7e-48  165.7   2.7    1.7e-48  165.7   2.7    2.3  2  Hydrolase     haloacid dehalogenase-like hydrolase
    2.4e-25   88.7   1.9    9.6e-14   51.6   0.1    2.4  2  HMA           Heavy-metal-associated domain
    4.2e-09   36.5   0.4    9.8e-07   28.8   0.4    2.2  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
    1.8e-08   35.0   0.3      2e-07   31.6   0.1    2.8  3  HAD           haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.022   15.0   1.7      0.022   15.0   1.7    3.5  3  DUF3040       Protein of unknown function (DUF3040)
      0.031   14.4   0.0       0.26   11.4   0.0    2.7  2  Hydrolase_6   Haloacid dehalogenase-like hydrolase
      0.047   14.1   0.0       0.21   12.0   0.0    2.1  2  CBS           CBS domain
      0.088   12.9   0.0       0.33   11.0   0.0    1.8  1  HAD_2         Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.11   2.2e+02      99     156 ..     164     231 ..     157     234 .. 0.62
   2 !  172.6   1.4   2.8e-54   5.6e-51       2     180 ..     322     502 ..     321     503 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHH..HHS-STTTSSTT.......HHHHH.HHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallv..flialllgksla.......eallr.alallv 156
                   ++v ++++++ + q  +++  + +++ + +++ll   ++++ ++g++         ++l+  +l+llv
    EHU01728.1 164 EVVDDEQQRREKQQTSARRALRRFSWQAGVALLLGvpLMVWGMMGDNMMltaanrtTWLVLgMLTLLV 231
                   66777888888888888888888777554444433013444455555445677777676665666666 PP

  == domain 2  score: 172.6 bits;  conditional E-value: 2.8e-54
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   l+p++a+vi ++ e+ ++++ ++pG i+ l agdr+p+Dg++ +g+a +de++LTGE++p +k++gd++f+Gt v +g++++++ atg +t l++i+
    EHU01728.1 322 LTPAQANVITEQGETLMPVSAVEPGMILRLVAGDRIPVDGEVQSGEAWCDEAMLTGEAVPQSKTQGDRLFAGTLVQDGTVRFIAQATGGNTALARII 418
                   899********************************************************************************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT..HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla..eallralallvaaiPcaLplavplalalgarrlak 180
                   +lv++a+s+k+++ + +d++++v+vpvv++iall +li++l+g +++  +al+ a +++++a+PcaL+la+p+++++g++r+a+
    EHU01728.1 419 QLVRKAQSSKPEVGRLADRISAVFVPVVVVIALLSALIWYLVGPQPQlaYALVVATTVMIIACPCALGLATPMSIIAGTGRAAE 502
                   ************************************************99*******************************996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.42   8.3e+02     149     193 ..     120     165 ..     116     168 .. 0.80
   2 !  165.7   2.7   8.5e-52   1.7e-48       1     210 []     519     734 ..     519     734 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.42
                 HHHHHH.TT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGE CS
                 xxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 149 eraanq.lG.ddyfdaviasdietvakpspegkvaaireLqgkpeev 193
                 e+a++q +G +++  +  +++  + + ++p+++vaa++   g ++ev
  EHU01728.1 120 EKALEQvAGvQQARVNLAERSALVMGHVEPQQLVAAVDAA-GYGAEV 165
                 678889888777778888888899*************998.565555 PP

  == domain 2  score: 165.7 bits;  conditional E-value: 8.5e-52
                 SSEEEEESBTTTBCHHHHHHHHHHHH......CHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHHHHHHHETTTE........HHHHTHHHHHHHH.HCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx........xxxxxxxxxxxxx.xxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa......alalaaaletgsehpigkalvaaakar.sgaltgfatfigrg........ayaigkpewltal.dip 83 
                 i+t+vfDk+GTLt+g p+v++vi          l+ aaale +s hp++ka+va+a a  ++++++f+t+ g+g        ++  g++ +l ++    
  EHU01728.1 519 IDTLVFDKTGTLTQGAPQVTEVITWQgstrdaVLSAAAALEQASGHPLAKAIVAEAGAGeKPDISQFHTIRGKGvsgilngrQLVLGNVSLLSEHgVDC 617
                 79*******************9999999999999******************777777758888*******************************8777 PP

                 HHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  84 pdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkv 180
                 +  +++++ + +qg t +ll  ++++ +++ + d+  ++pea ea+++L++ag+++++ltgd+++ta+++a+ +G           +e++a+++pegk 
  EHU01728.1 618 QAAQEETERLTRQGATPVLLaeDGKLTGLISLRDT--LRPEAGEALQRLHQAGYRLIMLTGDHENTARAIADDVG----------MDEVIAGVLPEGKA 704
                 888889999999999999999999***********..**************************************..........7888********** PP

                 HHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 181 aaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ai +Lq ++++vam+GDg+nDa+ala+A+
  EHU01728.1 705 DAISQLQQQGRQVAMIGDGINDAPALAQAD 734
                 *****************************8 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.3   2.6e-12   5.2e-09       3      62 .]       8      62 ..       6      62 .. 0.93
   2 !   51.6   0.1   4.8e-17   9.6e-14       2      61 ..     105     161 ..     104     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 2.6e-12
         HMA  3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                + +g+ C++C+++v+++L+  ++Ve+++v    +++ ++g+ae      +i+++e+agy+
  EHU01728.1  8 ALEGLSCGHCVKRVKEALEQRDDVEQAEVT--QQEASISGSAEV---TSLIATVEQAGYH 62
                689************************995..56**********...99**********7 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 4.8e-17
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                 + ++gm Ca+C+++vek+L+ + gV+++ v+la++++ V+g +e+    ++++a+++agy
  EHU01728.1 105 LLIDGMSCASCVSRVEKALEQVAGVQQARVNLAERSALVMGHVEP---QQLVAAVDAAGY 161
                 6799*****************************************...***********9 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0061        12      14      58 ..     651     695 ..     645     698 .. 0.87
   2 !   28.8   0.4   4.9e-10   9.8e-07     197     255 .]     708     766 ..     701     766 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0061
                  S---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  14 kkisektkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                   ++ +++ ea+++l+++g+ ++  TG +  +++ +++++g+d  +
   EHU01728.1 651 DTLRPEAGEALQRLHQAGYRLIMLTGDHENTARAIADDVGMDEVI 695
                  56778899*******************************999544 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 4.9e-10
                  HHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 197 kelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  ++l+ +  +v+ +GDg ND + L +a++g+Amg +s+ + + A+ +    + +GVa+al
   EHU01728.1 708 SQLQQQGRQVAMIGDGINDAPALAQADVGIAMGGGSDVAVESASITLLRDDLHGVADAL 766
                  56777889************************************99999999****997 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.5     7e+03       6      27 ..     392     413 ..     391     424 .. 0.80
   2 ?   -2.2   0.0       2.3   4.6e+03       2      40 ..     523     559 ..     522     586 .. 0.61
   3 !   31.6   0.1   9.8e-11     2e-07      85     187 ..     652     730 ..     614     731 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.5
         HAD   6 DgTLldgdslelllrfllrrga 27 
                  gTL+++ +  +++++ +++ a
  EHU01728.1 392 AGTLVQDGTVRFIAQATGGNTA 413
                 59*****999999998777654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklll 40 
                 +fD  gTL++g  ++  +++++++g+ r++ + ++++l+
  EHU01728.1 523 VFDKTGTLTQG--APQVTEVITWQGSTRDAVLSAAAALE 559
                 67777888888..44555555555555554444444333 PP

  == domain 3  score: 31.6 bits;  conditional E-value: 9.8e-11
         HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsD 183
                 +l+p+a e+l++ ++aG+r+++++g ++  ++++++ +g dev+a        +             egk++a+ + l++     +   v  +GD+++D
  EHU01728.1 652 TLRPEAGEALQRLHQAGYRLIMLTGDHENTARAIADDVGMDEVIAG-------VL-----------PEGKADAISQ-LQQ-----QGRQVAMIGDGIND 726
                 578********999*************************9999998.......22...........2334444444.222.....33348999****** PP

         HAD 184 lpll 187
                  p+l
  EHU01728.1 727 APAL 730
                 9997 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.7   1.1e-05     0.022      30      81 ..     173     235 ..     151     237 .. 0.81
   2 ?    1.3   1.1      0.22   4.3e+02      45      81 ..     444     480 ..     419     485 .. 0.65
   3 ?   -1.9   0.8       2.1   4.2e+03      53      76 ..     794     814 ..     777     824 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
     DUF3040  30 rggaararrrslrrlavlavllfvaGllllvlGvaaaa...........vvlgvvGfvvmlag 81 
                 r+++++++rr+lrr  ++a +++++G+ l+v G++ ++           +vlg++ ++vm+++
  EHU01728.1 173 REKQQTSARRALRRFSWQAGVALLLGVPLMVWGMMGDNmmltaanrttwLVLGMLTLLVMIGA 235
                 44555599999**********************777776888888877777777777777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.22
     DUF3040  45 avlavllfvaGllllvlGvaaaavvlgvvGfvvmlag 81 
                  v+ v++++++l+  ++G   +     vv ++vm+++
  EHU01728.1 444 PVVVVIALLSALIWYLVGPQPQLAYALVVATTVMIIA 480
                 4555566666888888886666677777777787665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.1
     DUF3040  53 vaGllllvlGvaaaavvlgvvGfv 76 
                 +aG+l  ++G++++    +v+G++
  EHU01728.1 794 AAGVLYPFTGLLLSP---IVAGAA 814
                 345555555544443...222222 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.3   6.6e+03       1      17 [.     522     538 ..     522     550 .. 0.76
   2 ?   11.4   0.0   0.00013      0.26       7      50 ..     645     688 ..     640     722 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.3
                  EEEESTTTSEETTEE-T CS
  Hydrolase_6   1 flfDidGvLwrgdkaip 17 
                  ++fD  G+L +g   + 
   EHU01728.1 522 LVFDKTGTLTQGAPQVT 538
                  589999**999875544 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00013
                  TTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHH CS
  Hydrolase_6   7 GvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakk 50 
                  G +   d++ p+a eal++l++ag+++++lT    ++ +++a++
   EHU01728.1 645 GLISLRDTLRPEAGEALQRLHQAGYRLIMLTGDHENTARAIADD 688
                  5556678899**********************999999988876 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.21      24      53 ..     626     654 ..     622     658 .. 0.84
   2 ?   -2.0   0.0       2.7   5.3e+03      18      36 ..     657     673 ..     652     681 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 HHHHHTSSEEEEE.ETTTBEEEEEEHHHHHH CS
         CBS  24 lmrekgvsrlPVV.dedgklvGivtlrDllr 53 
                 ++  ++ ++ PV+  edgkl G+++lrD lr
  EHU01728.1 626 RL--TRQGATPVLlAEDGKLTGLISLRDTLR 654
                 56..447888**6699************876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHTSSEEEEE CS
         CBS  18 leealelmrekgvsrlPVV 36 
                  +eal+++ ++g+ rl ++
  EHU01728.1 657 AGEALQRLHQAGY-RL-IM 673
                 689*****77779.87.42 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016      0.33      81     173 ..     654     735 ..     650     739 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
       HAD_2  81 ydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagi 173
                  +++ e+L+ L++agy+l   T  ++++++   + +g+    d ++ +   e+k       + a+ +l+ +  +v ++GD ++D  a  +a +
  EHU01728.1 654 RPEAGEALQRLHQAGYRLIMLTGDHENTARAIADDVGM----DEVIAGVLPEGK-------ADAISQLQQQGRQVAMIGDGINDAPALAQADV 735
                 578899*******************************6....555555553444.......89999******************988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 6350.74
//
Query:       EHU01729.1  [L=267]
Description: TraB family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-39  135.3   0.0    4.6e-39  134.9   0.0    1.1  1  TraB         TraB family
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.042   13.8   0.0    1.5  1  RHH_1        Ribbon-helix-helix protein, copG family
      0.034   13.4   0.0      0.047   13.0   0.0    1.2  1  Hydrolase_4  Serine aminopeptidase, S33
       0.07   12.8   0.0       0.14   11.8   0.0    1.4  1  DUF2271      Predicted periplasmic protein (DUF2271)


Domain annotation for each model (and alignments):
>> TraB  TraB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0     1e-42   4.6e-39       5     256 ..      28     266 ..      25     267 .] 0.92

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1e-42
        TraB   5 iskggttsyLfGTiHvskksvyplspeveealeksdtvvvEldlsddtdeatqkelaklkllpdgktlsdllseelyarlqkalakrglplaaldkmkP 103
                 i++g ++ +L+G+iH++  +++pl+ ++ + l+++d++vvE+d+      +  + + +  + p   +ls +++e ++a+l++ +++ gl+l+++d    
  EHU01729.1  28 IRSGACQFHLVGSIHMGTRDMQPLPVRLLQQLQNADALVVEADI-----TQGGSPFDDTEVCP---PLSVRMDEGTLAKLDALCNETGLSLTQFDTSPA 118
                 67788899************************************.....56799999999999...9************************99986555 PP

        TraB 104 wllalllslaelakkkagldpel.vDrylaktakragkpvgglEtveeqlsllsslpdeeqlealeetldeleeakdlleelveaykegdlealeleae 201
                 w +al+l++ +   +++gl p++ +D +l ++a++ +kpv +lE ++ q+ ll+slpd   ++ l++tl ++ +   +l+++v  + e   ++ +  a 
  EHU01729.1 119 WQIALMLQARQA--QRLGLRPDYgIDYQLLQAARSLQKPVIELEGADAQITLLKSLPD-NGMALLQDTLTHWHTNARMLQTMVSWWLESPPREPQ-IAL 213
                 ************..***************************************65665.56677789******99*********99999988884.357 PP

        TraB 202 aeeefpelkevlldeRnrrwaekieallkepgsvfvaVGagHlaGedgvlalLkk 256
                  ++ +++l+++l+ +Rnr w  ++++ l   g+++vaVGa+Hl Ge++++alL++
  EHU01729.1 214 PATFSQTLNDTLISQRNREWRGRLQT-LPA-GRYVVAVGALHLYGENNLPALLRA 266
                 788899*******************7.555.7*********************98 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.4e-06     0.042       2      27 ..      87     112 ..      86     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.4e-06
                 EEEEEEHHHHHHHHHHHHHHTSSHHH CS
       RHH_1   2 vsirldeellerLdelarrrgrSrSe 27 
                 +s+r+de +l++Ld+l+ ++g S  +
  EHU01729.1  87 LSVRMDEGTLAKLDALCNETGLSLTQ 112
                 79*******************99765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.047     141     232 ..     162     253 ..     114     257 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
  Hydrolase_4 141 nnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                  +  + + l + p++  a+ +d l+h+++ +r+l++++    +   r ++i lP  + +  +D+++++++++   + ++    ++ +  g+ H
   EHU01729.1 162 ADAQITLLKSLPDNGMALLQDTLTHWHTNARMLQTMVSWWLESPPREPQIALPATFSQTLNDTLISQRNREWRGRLQTLPAGRYVVAVGALH 253
                  5667777888888888999***********************************************99997776666666677777766666 PP

>> DUF2271  Predicted periplasmic protein (DUF2271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.14      33     102 ..     181     251 ..     174     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
     DUF2271  33 vktLavwgegekwlkdlrqWwrksg.rklkeeidgvsgaTrapGkyklkvdekddklkklkaGkYklvvEa 102
                 + tL  w+ +++ l+++ +Ww +s  r+ +  + +  + T +    + +  e + +l+ l+aG Y + v a
  EHU01729.1 181 QDTLTHWHTNARMLQTMVSWWLESPpREPQIALPATFSQTLNDTLISQRNREWRGRLQTLPAGRYVVAVGA 251
                 789**********************9999889999999**9999999999999999999*******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2092.70
//
Query:       EHU01730.1  [L=159]
Description: cys-tRNA Pro deacetylase/cys-tRNA Cys deacylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-25   89.6   0.1    1.9e-25   89.3   0.1    1.1  1  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.1     1e-29   1.9e-25       8     122 ..      31     146 ..      24     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1e-29
   tRNA_edit   8 eelaaalgvdpsaiaKtlvlkd..kkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkeyptvvv 104
                  e++++l+ d+ ++ Ktl++    ++++l+++++p +++ldlkk+ak+lgakk+++a++   ++++g+ +Gg++Plg  ++++p+++D+s+ +  t+++
  EHU01730.1  31 DEAVRKLNLDARQVYKTLLVALngDAKQLAVAVTPVATQLDLKKVAKALGAKKAEMADPLLAQRITGYLIGGISPLGQ-KKRLPTVIDHSANDFATLFI 128
                 6899*****************9888888*************************************************9.8******************* PP

   tRNA_edit 105 gagengatlelspedlrk 122
                 ++g++g  +elsp+dl +
  EHU01730.1 129 SGGKRGLDIELSPQDLSR 146
                 ***************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1393.79
//
Query:       EHU01731.1  [L=289]
Description: DNA binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-26   90.7   5.6    2.2e-25   89.3   5.6    1.7  1  LysR_substrate  LysR substrate binding domain
    1.9e-17   62.9   0.1    4.4e-17   61.8   0.1    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.26   11.6   0.1       0.42   10.9   0.1    1.3  1  NUMOD1          NUMOD1 domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   5.6   3.7e-29   2.2e-25       2     204 ..      89     283 ..      88     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 3.7e-29
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEE.EEEEEEEEETTSGGGGSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLa.eeplvlvaspdhpLarge 94 
                     +g + rL++++++   ++   +ll++f +ryPevele  +++ +++++ll+ g++ +++++ +p  ++++ + +L  + +l +++++dhpLa+++
      EHU01731.1  89 EGIEPRLSVAVSDFWQTHYHQRLLRQFDRRYPEVELEGIAAEHDDVVELLQTGRAQIGVIRAQPtLPADIAVARLQvDAELGIYLHRDHPLAQEA 183
                     67889***********************************************************9999999999988****************** PP

                     SECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                      v+ ++L+ ++++ l+           + +++  +   +a+++ ++  ll+++++G G+++lpr++v + + +g l+ lp++++p + ++ +v+ 
      EHU01731.1 184 TVNESQLEPLRHLRLN----------TWTERRAPTFqGRAWSAQTYYVLLEMAEQGFGWSILPRWLV-KQFGHGVLKELPVAGWPQRIAVEVVWS 267
                     **99999777777644..........33333333332467999************************.66************************* PP

                     TTCCCHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidfl 204
                     +++++ pa r++id l
      EHU01731.1 268 RRHPPGPAGRWMIDEL 283
                     *************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.1   7.3e-21   4.4e-17       2      60 .]       6      64 ..       5      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 7.3e-21
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                + l++fv+ + +gsf++AA++L+ sq+++s ++ +LE+ lg  Lf+R gr+ ++Te+G+
  EHU01731.1  6 ESLEAFVQTVASGSFSAAARALNKSQSTISVAVVNLEDDLGFALFDRRGRQPQPTEQGR 64
                579********************************************9*********97 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.1e-05      0.42      18      35 ..      19      36 ..      19      38 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
      NUMOD1 18 SireAakyLgishntInk 35
                S ++Aa++L++s +tI+ 
  EHU01731.1 19 SFSAAARALNKSQSTISV 36
                5689************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2579.85
//
Query:       EHU01732.1  [L=143]
Description: hypothetical protein CKS_0172 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-50  166.5  13.8    3.4e-26   91.1   1.0    2.0  2  BTP       Chlorhexidine efflux transporter


Domain annotation for each model (and alignments):
>> BTP  Chlorhexidine efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   1.0   1.9e-30   3.4e-26       1      63 [.       4      66 ..       4      67 .. 0.98
   2 !   80.8   5.8   3.1e-27   5.6e-23       1      63 [.      71     133 ..      71     134 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.9e-30
         BTP  1 rslkeRvlHallFElglllllvpllawllgvslleagvldiglslfalvwnfvyNllFDrlfa 63
                rsl+eR+lHa lFE++++l ++pl+aw+++++l+++g+l+i+ls++a++wn++yN +FDr+ +
  EHU01732.1  4 RSLTERILHASLFEGLAILTIAPLAAWMMDKPLFQMGALAIMLSTVAMLWNMMYNSVFDRWYP 66
                899**********************************************************86 PP

  == domain 2  score: 80.8 bits;  conditional E-value: 3.1e-27
         BTP   1 rslkeRvlHallFElglllllvpllawllgvslleagvldiglslfalvwnfvyNllFDrlfa 63 
                 rs + RvlHal+FE+g++l+ +pl+aw+l++sl++a+++++++++f+l+++fvyNl++D+l++
  EHU01732.1  71 RSAWVRVLHALGFEGGFILIGLPLAAWMLEISLWQAFMIEVAFFMFFLPYTFVYNLVWDKLRS 133
                 899*********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1162.67
//
Query:       EHU01733.1  [L=588]
Description: UDP-sugar hydrolase/5'-nucleotidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-36  125.8   0.2    3.5e-36  124.8   0.2    1.5  1  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    4.3e-16   60.0   0.1    1.3e-15   58.4   0.1    1.8  2  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.053   13.0   0.0    1.6  1  PGA_cap        Bacterial capsule synthesis protein PGA_cap


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.2   5.9e-40   3.5e-36       3     154 ..     364     506 ..     362     510 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 5.9e-40
                    EEESSB....---HHTS--HHHHHHHHHHTGSTT--EEEEEGGG----BTTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHHHHH.HTTTTTS--T CS
  5_nucleotid_C   3 gtttveldgrdlalrtgetnlgnliadalraaagadialangggiradlpaGditvkdlltvlpfgntlvvveltGaqlkeaLenesvsaskaasg 98 
                    g+++  ++g++ ++r ++++lg+li  a++aa++ad+a+++gggira+l++G++ ++dll+v+pf+n++v v+l+Ga++k++L    v + + +sg
     EHU01733.1 364 GRVNGVFSGEKETVRVQQSSLGQLILRAQMAATQADFAVMSGGGIRASLKPGPVAWRDLLQVQPFANQVVSVTLSGAEIKRYLA--VVANIEPGSG 457
                    666666677778999*********************************************************************..699******* PP

                    T-EEEESEEEEE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG-H CS
  5_nucleotid_C  99 rflqvsGlrytydlskpagervtslsvtvngkpldddktYkvatnsylasggdgfs 154
                    +++q++++++t +     g+ v+++  t+ng+pldd+ktY+ atns+ a ggdg++
     EHU01733.1 458 GYAQFANVSLTAN-----GSGVSKV--TINGQPLDDTKTYRMATNSFNAAGGDGYP 506
                    ******9999888.....99*****..77*************************97 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.1   2.2e-19   1.3e-15       1     203 [.      33     254 ..      33     255 .. 0.78
   2 ?   -2.0   0.0      0.69   4.1e+03     116     176 ..     495     539 ..     451     558 .. 0.53

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 2.2e-19
                  EEEEEEESBTB.....TTCCTHHHHHHHHHHHH....HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEE....EEEC-TTSCHHH..HHH CS
  Metallophos   1 lrilvigDlHl.....algggqlddllkllddl....lreekpdlvllaGDlvdrgdlekellel.laalvkypipv....ylllGNHegfee..ell 82 
                  ++il+++DlH+     + g+++l++ ++l+d +    +++ +  l+l aGD v++g++e++ l+   +  ++   ++    +++lGNHe f++   +l
   EHU01733.1  33 FSILHTNDLHGhfwfdEQGEYGLAAQKTLIDTArydiQAKGGGALILSAGD-VNTGVPESDALDAePDIRGM---NLigydAMTLGNHE-FDKplAVL 125
                  68**************9999**********8887776555799********.****9999999995555555...333667********.88766788 PP

                  HHHHHHHHH....HHHHEHH..HCEEETSEEEEEETTEEEEEEEESECEEE..THHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESS CS
  Metallophos  83 nkygylgif....sepwrsd..aevfnnlplaslgsgslkvlllhGgspel..lvsldklgslnleleapepgdewlkdlekrekadwvivlgHsply 172
                  +k++++++f    ++++++   +  f  +  +  ++   k+ ++   +p+   l+++++l+ ++++++++e   +  ++l+++ek d++++l+H ++y
   EHU01733.1 126 RKQEKWAKFpflaANVYQKStgKRLFKPWAMFRRMGL--KIAVIGLITPDTtrLTNPEQLTDIEFRDPVAEA-VKVVSELRAKEKPDVIVALTHLGHY 220
                  8888888887775555555433334444444444444..3333333366667789999***********999.999999******************* PP

                  ...CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 173 ...rgsgylfgdealedllkkygvdlvisGHtHv 203
                      ++++  +d  l++ l  + + ++++GH+H 
   EHU01733.1 221 ddgKHGSNGIDDVTLARRLPAGTLNMIVGGHSHD 254
                  87777777777777778899999**********6 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.69
                  EEEEEESE..CEEETHHHHHHHHHHHSCHHHHCC............HHHHHHHHHHTTCSEEEEEESSESSCSSS CS
  Metallophos 116 kvlllhGg..spellvsldklgslnleleapepg............dewlkdlekrekadwvivlgHsplyrgsg 176
                  + + + Gg  +p++                + pg             +w ++              Hspl+  s 
   EHU01733.1 495 NSFNAAGGdgYPRI---------------DSLPGyvnsgnvdavvlRDWVSK--------------HSPLN-ASD 539
                  44444444222222...............22222222222224445666666..............77766.333 PP

>> PGA_cap  Bacterial capsule synthesis protein PGA_cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.9e-06     0.053     162     235 ..     182     255 ..     100     267 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.9e-06
     PGA_cap 162 eagaskerpgvaskdleklladirearkeadlvivslHwgeeyqek...padeqrelaralidaGadvviGhhpHvl 235
                 + ++ + r+ va  ++ k+ +++r+  +++d++++  H g+ ++ k      + ++lar+l +   ++++G h+H  
  EHU01733.1 182 QLTDIEFRDPVA--EAVKVVSELRAK-EKPDVIVALTHLGHYDDGKhgsNGIDDVTLARRLPAGTLNMIVGGHSHDA 255
                 333333344442..244555555444.46**********86544441114457899*******99**********65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4209.56
//
Query:       EHU01734.1  [L=564]
Description: Na+/H+ exchanger [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-79  266.5  49.6    4.4e-79  266.0  49.6    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    7.4e-20   71.3   1.9    7.4e-20   71.3   1.9    1.7  2  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.045   13.9   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
        0.1   12.3   0.1       0.24   11.1   0.1    1.6  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.14   12.3   0.1       0.14   12.3   0.1    2.0  3  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.19   12.2   0.3       0.59   10.6   0.1    1.9  2  NAD_binding_7   Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.0  49.6   1.5e-82   4.4e-79       5     380 ..      15     384 ..      10     388 .. 0.94

  Alignments for each domain:
  == domain 1  score: 266.0 bits;  conditional E-value: 1.5e-82
                     HHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   5 illallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGllly 99 
                     ++la+l+g+la+rl+++++vg+++aG++ Gp+++g+++++     +l+elg+ill+F +Gl+++l++l+++++ ++ +a+++++++++l G+l++
      EHU01734.1  15 LVLAFLLGMLANRLRISPLVGYLVAGVMAGPFTPGFVADT-NLAPELAELGVILLMFGVGLHFSLKDLMSVKRIAIPGAIAQIAVATLL-GMLMS 107
                     4559999999*****************************9.************************************************.***** PP

                     .HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX..XXXXTSSSTS......XHHHHHHHH CS
  Na_H_Exchanger 100 lllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalak..eeaggetsll......lllliflvv 186
                     +   +g+++  +l+fg++ls+ ++vv+l+ l+e+++++++ g++++g+++++D+v+v+ l++l+a+a+  e+ ++ +sl+      +++++++++
      EHU01734.1 108 W--AMGWSWMTGLVFGLCLSTASTVVLLRALEERQLIESQRGQIAIGWLIVEDLVMVLTLVLLPAIAGmmEQGNASASLViwdllwTIGKVAAFM 200
                     9..7899************************************************************986444444444488999899999999* PP

                     HHHHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHH.HHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger 187 avgglllglvigwllrlitrftdddrelevllvlllalla.allaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvGls 280
                     +++ ++++++++w+l++  ++  ++rel++l vl+lal++ +++ e ++vs +lgaf+aG+vl+e+e+s++++ ++ ++r ++f++lfFv+vG+ 
      EHU01734.1 201 VLMMVVGRRAVPWILAKSAAT--GSRELFTLSVLALALGIaFGAVEFFDVSFALGAFFAGMVLNESELSQRAARDTLPLR-DAFAVLFFVSVGML 292
                     *********************..****************955666777********************************.9************* PP

                     SXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHH CS
  Na_H_Exchanger 281 ldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlsl 375
                     +d+ +l   ++ +++vl++lv++++g+ +a++ll++llg s+r+a++i+++++q+g++a++la lg +lgll++e  +l+++++++++      l
      EHU01734.1 293 FDPMIL---VKEPLAVLGALVIVVIGKSAAAWLLVSLLGDSRRTAMTISVSLAQIGEFAFILAGLGISLGLLDEEGRNLVLAAAILSIM-----L 379
                     ******...********************************************************************************.....7 PP

                     HHHHH CS
  Na_H_Exchanger 376 kpllk 380
                     +p+l+
      EHU01734.1 380 NPVLF 384
                     77765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.5   1.3e+04      65      85 ..     309     329 ..     296     342 .. 0.72
   2 !   71.3   1.9   2.5e-23   7.4e-20       2     115 ..     421     534 ..     420     535 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.5
                 EEEE-SSSHHHHHHHHHHHHH CS
      TrkA_N  65 aviaatgddeanilavllake 85 
                 +vi+++g+ +a  l+v l+ +
  EHU01734.1 309 LVIVVIGKSAAAWLLVSLLGD 329
                 577777777777777766644 PP

  == domain 2  score: 71.3 bits;  conditional E-value: 2.5e-23
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGG CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdpe 100
                 +i+G+GrvG  l+e+L + +++vvv++++  rv+ lr++g+++v ++a++ ++L  a ++ a+++++++++  +   +v +a++   ++ ii+ a++++
  EHU01734.1 421 VIVGYGRVGNLLCEQLIKLNIPVVVVESSIPRVKALRDQGIRAVLANAARANTLVLARVDCANWLLVTIPNGYEVGEIVTAARQKQADIDIIVHAHYDD 519
                 8*****************7668**************************************************999************************ PP

                 GHHHHHHHTTSEEEE CS
      TrkA_N 101 haellkklgadvvis 115
                 ++e++ + ga++v++
  EHU01734.1 520 EVEYILERGANHVVM 534
                 *************96 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.045       4      87 ..     422     513 ..     419     531 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                    EE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHC........SEEEE-SSSHHHHHHHHHSHCCC--TT-EEE CS
  NAD_binding_2   4 fiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasl........dvvitmvkagkavdeviegllealkkgdili 87 
                    ++G G  G+ ++++l+k ++ v+v++ +  +v++l ++g++a+   ++ +++l        +  ++ +++g +v e+++   ++ +  di++
     EHU01734.1 422 IVGYGRVGNLLCEQLIKLNIPVVVVESSIPRVKALRDQGIRAVLANAARANTLvlarvdcaNWLLVTIPNGYEVGEIVTAARQKQADIDIIV 513
                    69*************************************66666666666666666667779999999999999999988777666666655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   7.9e-05      0.24       2      48 ..     421     469 ..     420     515 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.C CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg.g 48 
                 +i+G G +G ll+ +L k + +v+++  s  r++al+++G+r    +  
  EHU01734.1 421 VIVGYGRVGNLLCEQLIKLNIPVVVVESSIpRVKALRDQGIRAVLANaA 469
                 69****************************************9988842 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         4   1.2e+04      15      41 ..     311     337 ..     303     338 .. 0.82
   2 ?   12.3   0.1   4.5e-05      0.14      13      56 ..     418     460 ..     407     481 .. 0.86
   3 ?   -3.3   0.0       2.9   8.7e+03      13      33 ..     529     549 ..     520     553 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
                   EEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH  15 vlliGaGemaelvakhLlakgvkkvvv 41 
                   +++iG    a l+++ L +++ +++++
    EHU01734.1 311 IVVIGKSAAAWLLVSLLGDSRRTAMTI 337
                   789999999999999998888888887 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.5e-05
                   -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56 
                   ++++++G G++++l++++L++ ++  vvv+  ++ r+k+l+++ 
    EHU01734.1 418 NHAVIVGYGRVGNLLCEQLIKLNIP-VVVVESSIPRVKALRDQG 460
                   6799********************9.**************9875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.9
                   -EEEEES-SHHHHHHHHHHHC CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLla 33 
                   ++ +++G  e+a  ++++L +
    EHU01734.1 529 ANHVVMGEREIAASIIQKLQE 549
                   445566666666666666655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0002      0.59       9      85 ..     419     505 ..     416     530 .. 0.61
   2 ?   -2.2   0.0       1.8   5.5e+03       7      27 ..     528     548 ..     521     558 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapev...keeleelvk.....laeee.l.ekdlegadlviaatddrelneriaeaakar 85 
                    + ++vG G+v+   +++l++ +  v+vv   +   k+  ++ ++     +a+ + l  + ++ a  +++++++  +  +i+ aa+++
     EHU01734.1 419 HAVIVGYGRVGNLLCEQLIKLNIPVVVVESSIprvKALRDQGIRavlanAARANtLvLARVDCANWLLVTIPNGYEVGEIVTAARQK 505
                    789*************************99964432222222222211111111212233444554444555555555555555544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
  NAD_binding_7   7 gkkvlvvGgGevAarkvrkll 27 
                    g + +v G  e+Aa+ ++kl 
     EHU01734.1 528 GANHVVMGEREIAASIIQKLQ 548
                    445556666666665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3952.33
//
Query:       EHU01735.1  [L=433]
Description: inosine/guanosine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-13   49.0   0.0    3.3e-08   33.2   0.0    2.3  2  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.8e-12   3.3e-08      78     237 ..     137     295 ..      65     306 .. 0.77
   2 !   13.6   0.0   1.7e-06     0.031     248     296 ..     346     414 ..     338     420 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.8e-12
                 EETTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES...EEC..TTSHHHHHHHHHHHHHHTTE..EEEEECESS CS
        PfkB  78 dtdyvkidedtrtglalivvdedgertivfnrgaaadltkeeleededlleeadllyisg...lls..selpeavleelaeaaknggt..fdpnlldpl 169
                 d +y++ + d   g +++++  +g+rt+ + +g++++l+ e +  +ed ++ a+ l++ +    +   +++p+a+l+++++a++++     ++      
  EHU01735.1 137 DLNYLQGV-DGAIGRCFTLIGDQGDRTFAISPGQMNQLKAESV--PEDVIAGASALVLTSylvRCKdgEPMPQATLQAIEYAKRHNVPvmLTLGTKHVI 232
                 55556533.34789999999988*****************865..9999***********744222235789999999999999999743222222333 PP

                 SHHHHHHHHHHH.CTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.T CS
        PfkB 170 gaqfkeallell.aladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.k 237
                 g+   +  +++l  +++++ +neeE+ altge+  d+  a +++ +     +++v+ t G  G + +  +
  EHU01735.1 233 GD-NPQFWRDFLrDHVSIVAMNEEEALALTGEA--DPLLASDRALE----WVDLVLCTAGPTGLYMAGyT 295
                 33.34444555559*******************..88888888888....79***********9988653 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.7e-06
                 SSS-SBGTTHHHHHHHHHHHHHHT....................THHHHHHHHHHHHHHHHHHTSSSSS CS
        PfkB 248 kvkvvDttGAGDsfvggflaalle....................gksleealrfanavAalvvqkkgai 296
                 ++k+ +t+GAGD   +++l  +++                      sl++ +++an+v+ +v+ +++++
  EHU01735.1 346 PEKIMNTNGAGDGALAALLHDITAnnyhrrnvpnsskharayltYSSLAQVCKYANRVSYQVLNQHSPR 414
                 589*********************999999999999999999999999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3235.77
//
Query:       EHU01736.1  [L=214]
Description: adenylate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-60  203.2   0.1    2.4e-60  203.0   0.1    1.0  1  ADK              Adenylate kinase
      5e-27   95.0   0.4      1e-26   94.0   0.0    1.6  2  AAA_17           AAA domain
    4.1e-16   58.7   0.0    7.4e-16   57.8   0.0    1.4  1  ADK_lid          Adenylate kinase, active site lid
    0.00012   22.4   2.3       0.37   11.1   0.0    2.6  3  Hydin_ADK        Hydin Adenylate kinase-like domain
     0.0014   18.8   0.1     0.0091   16.2   0.0    2.2  2  AAA_33           AAA domain
     0.0033   18.0   0.0     0.0061   17.1   0.0    1.5  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.043   14.0   0.0    1.4  1  AAA_28           AAA domain
       0.15   11.7   0.5        0.9    9.2   0.1    2.1  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.1   1.1e-63   2.4e-60       1     150 [.       5     186 ..       5     187 .. 0.99

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 1.1e-63
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgfllDGfPRtveqaealeelleee 99 
                 llGaPgaGKGtqa+ +++kyg++++stGd+lRa+vk+gtelG++ak++md+g+lv+de+v++lvke++++ed+k+gfllDGfPRt++qa+a+++    +
  EHU01736.1   5 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGTELGNQAKAIMDAGKLVTDELVIALVKERIAQEDCKNGFLLDGFPRTIPQADAMKQ----A 99 
                 79*******************************************************************************************9....9 PP

                 TSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 100 kvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkkg 150
                 ++k+d+vle+ vp+e++veR++g                                    D+eetv+kRl +y++ t+pli yy+k++
  EHU01736.1 100 GIKVDYVLEFAVPDELIVERIVGrrvhapsgrvyhvkfnppkvegkddmtgeelttrkdDQEETVRKRLVEYHQLTAPLIAYYSKEA 186
                 ***********************************************************************************9975 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   4.6e-30     1e-26       1     123 [.       6     124 ..       6     134 .. 0.88
   2 ?   -2.1   0.1       2.1   4.6e+03     127     135 ..     156     164 ..     145     176 .. 0.64

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 4.6e-30
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 lG PG+GKgtq++ ++ekyg++ +s+Gd+lr+ +k g +l ++a+  m+ ++l+ ++ + ++++e+ia+e++k+g+l+dg+pr+  qa++   +++   
  EHU01736.1   6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGtELgNQAKAIMDAGKLVTDELVIALVKERIAQEDCKNGFLLDGFPRTIPQADA---MKQ--- 98 
                 7*********************************999667455666666899999*****************************998885...444... PP

                 HHH..SEEEEEE--HHHHHHHHHHHT CS
      AAA_17  98 eelkpdaiilleadpeeilerrlkdr 123
                 + +k+d ++ + +++e i+er   +r
  EHU01736.1  99 AGIKVDYVLEFAVPDELIVERIVGRR 124
                 7899*****************99985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
                 -TS-SHHHH CS
      AAA_17 127 rdddneesi 135
                 r+dd+ee++
  EHU01736.1 156 RKDDQEETV 164
                 444444443 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   3.3e-19   7.4e-16       1      36 []     123     158 ..     123     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 3.3e-19
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 Rrv+  +Gr+Yhv+fnpPkveg++D +Ge+L++R+D
  EHU01736.1 123 RRVHAPSGRVYHVKFNPPKVEGKDDMTGEELTTRKD 158
                 9**********************************9 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00016      0.37       2      49 ..       3      49 ..       2      55 .. 0.85
   2 !   10.9   0.1   0.00018       0.4     172     197 ..      60      85 ..      53      86 .. 0.93
   3 ?   -3.7   0.0       5.5   1.2e+04     171     180 ..     111     120 ..     106     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
   Hydin_ADK  2 iivhGaPlsGKtatavtLakkYeaAlltiDsvvleAisdgnssaGlrA 49
                ii+ GaP +GK + a  +  kY++  ++  +++  A+  g ++ G +A
  EHU01736.1  3 IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAG-TELGNQA 49
                8999************************999998888654.4556555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00018
   Hydin_ADK 172 PedllveIlsERlqlndCyrGvvfDg 197
                  ++l+++++ ER+  +dC  G ++Dg
  EHU01736.1  60 TDELVIALVKERIAQEDCKNGFLLDG 85 
                 589**********************9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.5
   Hydin_ADK 171 LPedllveIl 180
                  P++l+ve +
  EHU01736.1 111 VPDELIVERI 120
                 6999999865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.1e-06    0.0091       2     119 ..       3     124 ..       3     136 .. 0.60
   2 ?   -2.5   0.0       2.3   5.2e+03      54      65 ..     159     170 ..     141     200 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg...tdqqsktdytrvldr.lyqilnelarkalsag...rnvildatnlsrrerarflklar 93 
                 ++l G+pG+GK t a+ +++k g   +s+ +++r+ ++   +  ++ +   ++ +  + + + +l++++ +++   ++++ld   ++  + +++ ++  
  EHU01736.1   3 IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKagtELGNQAKAIMDAGKLvTDELVIALVKERIAQEdckNGFLLDGFPRTIPQADAMKQAGI 101
                 6899*******************7777777766655553763333333333333333333333444444433322255666654444444444444433 PP

      AAA_33  94 rlgvpvrivvvetdeetlkeRlakRa 119
                   +  + ++ + +++e++ eR+  R 
  EHU01736.1 102 --K-VDYVLEFAVPDELIVERIVGRR 124
                 ..3.2377888888888888888886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
      AAA_33  54 rlyqilnelark 65 
                 +  +++++++ +
  EHU01736.1 159 DQEETVRKRLVE 170
                 333333333333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.7e-06    0.0061       1     115 [.       3     125 ..       3     136 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknl.vidghlaeleseaakd 93 
                 I+l G+pG+GK t a+ + ++ g+     g+ lr  +k  g++l+++++a+ +  +l++d    l+ al + + a+e++kn  ++dg++    +++a +
  EHU01736.1   3 IILLGAPGAGKGTQAQFIMEKYGIpqistGDMLRAAVKA-GTELGNQAKAIMDAGKLVTDE---LVIALVKERIAQEDCKNGfLLDGFPRTIPQADAMK 97 
                 9*******************9888988877777766655.555555555455555555555...33333333334666666558888887766555555 PP

      AAA_18  94 ikk......vvLtaspeelleRlekRgy 115
                   +          +++e   eR+  R+ 
  EHU01736.1  98 QAGikvdyvLEFAVPDELIVERIVGRRV 125
                 4555777433344677777777777765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.9e-05     0.043       1      79 [.       2      84 ..       2      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
      AAA_28  1 kivitGgestGKTtlleaLaar.gypvv..pEaareileeklakgedalpwv.edllafaervleeqleeeaaaaankvlfcD 79
                +i+++G++++GK t ++ + ++ g+p +   ++ r  ++ +++ g++a +   + +l   e+v++  +e+ a+ + ++ +++D
  EHU01736.1  2 RIILLGAPGAGKGTQAQFIMEKyGIPQIstGDMLRAAVKAGTELGNQAKAIMdAGKLVTDELVIALVKERIAQEDCKNGFLLD 84
                79****************99877***88789***********99998666555566666677777777777777777777777 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0004       0.9       3      60 ..       7      66 ..       7      76 .. 0.74
   2 ?    0.5   0.1      0.19   4.3e+02     155     184 ..     178     208 ..     146     209 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0004
                     ESTTSSHHHHHHHHHHHHHHTTE....EEEESSSTTSHHHHHHHHHHHTCS---HHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegik...vvltrepggteiGekirelllkeeeleeqteall 60
                     G  GaGK tqa++++e++    i+   +++   + gte+G+++++++  + +l    +++ 
       EHU01736.1  7 GAPGAGKGTQAQFIMEKYGIPQIStgdMLRAAVKAGTELGNQAKAIMD-AGKLVTDELVIA 66
                     5569*************9766665567888888999999999998877.555555554444 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.19
                      HHHHHHHHHH.TTSTEEEEETTS-HHHHHHH CS
  Thymidylate_kin 155 vrerylelak.ederiliidasksieevhee 184
                      + ++y ++a+  +++++ id ++++ +v +e
       EHU01736.1 178 LIAYYSKEAEaGNTEYHKIDGTRNVSDVSAE 208
                      3457889999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1550.61
//
Query:       EHU01737.1  [L=622]
Description: molecular chaperone HSP90 family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-130  437.0   5.0   2.4e-128  429.3   5.6    2.0  2  HSP90        Hsp90 protein
    9.1e-14   51.9   0.1    1.8e-13   51.0   0.1    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    3.7e-11   43.0   1.6    4.4e-11   42.7   0.2    1.9  2  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.077   12.3   0.1       0.17   11.2   0.1    1.5  1  AnfO_nitrog  Iron only nitrogenase protein AnfO (AnfO_nitrog)


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00023         1       1      31 [.     186     216 ..     186     219 .. 0.91
   2 !  429.3   5.6  5.4e-132  2.4e-128      67     486 ..     211     621 ..     209     622 .] 0.94

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00023
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEX CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekee 31 
                 e+l++ ++++++ kyS+ i  p+++ ++ ee
  EHU01737.1 186 EFLDSWRVRNIIGKYSDHIALPVEIETKDEE 216
                 79***********************888765 PP

  == domain 2  score: 429.3 bits;  conditional E-value: 5.4e-132
                 XXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEES CS
       HSP90  67 ktkkvketvkewellNkqkpiWlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitd 165
                 +tk  +  ++ we++Nk +++W+r+++e+++eeYkeFYk +++d +dp +++h ++eg+ e++++L++P rap+d++++   ++k+ +kLYv+rVfi+d
  EHU01737.1 211 ETKDEESGTTTWEKINKAQALWTRSKSEISDEEYKEFYKHIAHDFSDPATWSHNRVEGKQEYTSLLYIPARAPFDIWNR---DHKHGLKLYVQRVFIMD 306
                 5788889999********************************************************************6...67899************ PP

                 XXTTSSXGGGTTXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXHH.H..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTE CS
       HSP90 166 efedllPkyLsFvkGvvdsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklaee.keeykkfykefsknlklGiiedsanrkklakLlrfkssks 263
                 ++e+++P+yL+Fv+G++ds+dLPLNvsRE+lq++++ + ++  l ++vl+ml+kla+e +e+y++f+kef+  lk G  ed+an++ +akLlrf +++s
  EHU01737.1 307 DAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSRVTQNLRGALTKRVLQMLEKLAKEdSEKYQTFWKEFGLVLKEGPAEDHANKETIAKLLRFATTQS 405
                 *******************************************************7651577**********************************977 PP

                 EE..EEEEHHHHHHHSXTTXXEEEEEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXX.XXHHHHHHHHHHHH CS
       HSP90 264 ee..eltsLedYvermkekqksiYyiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakeglele.eeeeekkkkeelkk 359
                 e+  +++sLedYv+rm e+q++iYyi+++s +++++sp le ++kkg+evl+l d iDe +++ l+e++gk +++v+k +  l+   +ee ++++e +k
  EHU01737.1 406 ESaaQTVSLEDYVSRMVEGQEKIYYITADSYAAAKSSPHLELFRKKGIEVLLLSDRIDEWMMSYLTEFDGKAFQSVSKADEALDkLADEETEAQKEAEK 504
                 654489*****************************************************************************8567888999999*** PP

                 HHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHHHH CS
       HSP90 360 kfeeltkllkevlkdkvekvkvserlvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeeakdlael 458
                 + e++++ +k++l+++v++v++++rl+d+P++++t+   ++++m ++  a   +d  + +y     ++einp+h+++k+    v++ +++  + + +el
  EHU01737.1 505 ALEPFVERVKTLLGERVKEVRLTHRLTDTPAIVTTDANEMTTQMAKLFAAA-GQDVPEVKY-----IFEINPDHQLVKR----VADTQDEARFGEWIEL 593
                 **********************************************99775.556666655.....59******98875....555566789******* PP

                 HHHHHHHHTTXXXSXHHHHHHHHHHHHT CS
       HSP90 459 lyetallesGfsledpasfakrierllk 486
                 l ++all+   +l+dp++f +r+++ll+
  EHU01737.1 594 LLDQALLAERGTLDDPNQFIRRMNQLLT 621
                 ************************9985 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1     4e-17   1.8e-13       1     110 [.      27     182 ..      27     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 4e-17
                 EHHHHHHHHHHHHHHHHHHH........HS..TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.......HCSTCHTSTSS CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf........at..kageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.......ddstkrggggt 74 
                 ++e++Lr++isn++d+a+k         +    +g+++v++++++d+ +i+ +DnGiG+ ++++        k+++ +f +       +ds+ +g++g+
  EHU01737.1  27 NKEIFLRELISNASDAADKLrfralsdaSLyeGDGDLRVRLSVDKDNRTITLSDNGIGMRRDEVIenlgtiaKSGTkAFLEslgsdqaKDSQLIGQFGV 125
                 5899****************99999885223355677999999999***************99999999999888888888888887777777778888 PP

                 SH.HHHHH................HH.HHHHTT.TEEEE..EEETTTEEEEEEEEES CS
   HATPase_c  75 Gl.Glsiv................kk.lvelmg.Geiwv..esepgrGttftftlpl 110
                 G+ ++ iv                +  ++e  g Ge ++  +s+ +rGt++t++l++
  EHU01737.1 126 GFySAFIVadkvsvrtraagaaedEGvFWESAGeGEYTIadISKADRGTEITLHLRE 182
                 876555555544444444444444223444355566666888999*********986 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.2   9.9e-15   4.4e-11       1     118 [.      25     166 ..      25     179 .. 0.80
   2 ?   -3.7   0.1       2.2     1e+04      88     109 ..     208     229 ..     202     249 .. 0.50

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 9.9e-15
  HATPase_c_3   1 ysl.ekAlaelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeak..r.......ksts 69 
                  ys+ e+ l el+ N+ dA  +                   v ++v+k++    +i+  D+G Gm ++e+++ l ++a+s ++a   +       +s+ 
   EHU01737.1  25 YSNkEIFLRELISNASDAADKLrfralsdaslyegdgdlrVRLSVDKDN---RTITLSDNGIGMRRDEVIENLgTIAKSGTKAFleSlgsdqakDSQL 119
                  566688899********877667***************99999999975...7*****************9774799999886544144444447888 PP

  HATPase_c_3  70 lGkkGiGlklAslslgkkltvitkkegesstltldvdkidkenekvlee 118
                  +G++G+G + +++ +++k++v t++ g  +   + ++  + e+e+++++
   EHU01737.1 120 IGQFGVG-FYSAFIVADKVSVRTRAAGAAEDEGVFWES-AGEGEYTIAD 166
                  *******.*****************9988755555542.3345555555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
  HATPase_c_3  88 ltvitkkegesstltldvdkid 109
                  ++++tk e++ +t+  +++k +
   EHU01737.1 208 VEIETKDEESGTTTWEKINKAQ 229
                  5566665544444333333333 PP

>> AnfO_nitrog  Iron only nitrogenase protein AnfO (AnfO_nitrog)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.8e-05      0.17      67     120 ..     457     510 ..     453     543 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.8e-05
  AnfO_nitrog  67 fvakevsGilyslLekagfsiweiegkpeefLdevlekeeeeaeeakkkeesip 120
                  ++++++   ++s+L +++ + +++ +k +e+Ld+ +++e+e+++ea+k+ e ++
   EHU01737.1 457 LLSDRIDEWMMSYLTEFDGKAFQSVSKADEALDKLADEETEAQKEAEKALEPFV 510
                  788999999***************************999999999998444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1072  (0.0597914); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4310.88
//
Query:       EHU01738.1  [L=201]
Description: gap repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-24   84.6   0.0    8.2e-24   83.9   0.0    1.4  1  Toprim_4      Toprim domain
    1.7e-15   56.3   1.4    3.3e-15   55.4   1.4    1.5  1  RecR          RecR protein
    2.2e-11   43.9   0.0    3.7e-11   43.1   0.0    1.3  1  Toprim        Toprim domain
  ------ inclusion threshold ------
      0.026   14.4   0.4       0.22   11.5   0.0    2.5  3  HHH           Helix-hairpin-helix motif
      0.042   14.5   0.0       0.38   11.4   0.0    2.3  2  HHH_5         Helix-hairpin-helix domain
      0.056   13.7   0.5       0.99    9.6   0.3    2.1  2  FYVE_2        FYVE-type zinc finger
       0.13   12.1   0.0       0.24   11.2   0.0    1.4  1  Gln-synt_N_2  Glutamine synthetase N-terminal domain
       0.15   12.5   0.0       0.65   10.5   0.0    1.9  2  Toprim_2      Toprim-like


Domain annotation for each model (and alignments):
>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   3.7e-27   8.2e-24       2      89 .]      82     172 ..      81     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.7e-27
    Toprim_4   2 eiiiVEgyaDvlaleka.giknvvavlggalspldgirpeklktenlve..aekkvkevilaldgDaeGeataerlaellleegvkvtrla 89 
                 +i++VE++aD  a+e++ ++ + ++vl+g lspldgi+p+++  ++l +  +++ ++evila+++++eGeata ++ael+++ gv ++r+a
  EHU01738.1  82 QICVVESPADIHAIEQTgQFAGRYFVLMGHLSPLDGIGPADIGLDRLEQrlEKEAIQEVILATNPTVEGEATANYIAELCGQYGVEASRIA 172
                 8*******************************************99999**999************************999******9986 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   1.4   1.5e-18   3.3e-15       3      39 ..      41      77 ..      39      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.5e-18
                HHHHHHHHHHHHH-EE-TTT--EESSSS-CCCCSTTS CS
        RecR  3 eeLaeaLqeakekvrhCsrCgnlteedlCaICsdprR 39
                 +La+aL++a+++++hC  C+++te+++C+IC++prR
  EHU01738.1 41 MRLAQALTRAMSEIGHCADCRTFTEQEICTICANPRR 77
                69*********************************** PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.7e-14   3.7e-11       1      90 [.      82     164 ..      82     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.7e-14
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHH..HHHSEEEEECSSSHHHHHHHHHHHHHHTHH CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkela..kradeiilatDpDreGeaiawellevlkel 90 
                 ++++vE+p+d  +i+++ g+  ++++ ++Gh+  l+         i ++   l+ l++++  +  +e+ilat+p +eGea+a +++e+++++
  EHU01738.1  82 QICVVESPADIHAIEQT-GQFAGRYFVLMGHLSPLDG--------IGPADIGLDRLEQRLekEAIQEVILATNPTVEGEATANYIAELCGQY 164
                 59***************.88*****************........888888888887777657788********************888744 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.7e-05      0.22      12      25 ..      13      26 ..      10      27 .. 0.81
   2 ?   -0.6   0.0      0.64   1.4e+03      16      21 ..     115     120 ..     112     121 .. 0.82
   3 ?   -2.4   0.0       2.5   5.6e+03      20      27 ..     150     157 ..     150     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.7e-05
                HHHTSTT-SHHHHH CS
         HHH 12 eLlalPGVGpktAe 25
                 L  lPGVGpk A+
  EHU01738.1 13 SLRCLPGVGPKSAQ 26
                55669********8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
                 STT-SH CS
         HHH  16 lPGVGp 21 
                 l G+Gp
  EHU01738.1 115 LDGIGP 120
                 78***9 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.5
                 SHHHHHHH CS
         HHH  20 GpktAeaI 27 
                 G++tA+ I
  EHU01738.1 150 GEATANYI 157
                 89999855 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.38      40      55 ..      17      32 ..       9      33 .. 0.84
   2 ?   -0.3   0.0      0.75   1.7e+03       7      14 ..     115     122 ..     111     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                STTS-HHHHHHHHHHH CS
       HHH_5 40 ipGiGkktAeriilel 55
                +pG+G+k A+r+  +l
  EHU01738.1 17 LPGVGPKSAQRMAFQL 32
                8**********98776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.75
                 STT--HHH CS
       HHH_5   7 vsGiGpkt 14 
                 ++GiGp++
  EHU01738.1 115 LDGIGPAD 122
                 789**997 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00044      0.99      61      99 ..      44      86 ..      26     100 .. 0.78
   2 ?    2.0   0.0     0.099   2.2e+02      29      49 ..     125     145 ..     122     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00044
      FYVE_2 61 leefkllvnskrqCldCkln....vCkkCsvenkkekvwlCki 99
                ++ ++  +++  +C dC+++    +C+ C++  +++++ +C +
  EHU01738.1 44 AQALTRAMSEIGHCADCRTFteqeICTICANPRRQQNGQICVV 86
                5666666777789****864222289999999******99976 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.099
      FYVE_2  29 lgelkeklekekskrellgnq 49 
                 l++l ++leke +++ +l+ +
  EHU01738.1 125 LDRLEQRLEKEAIQEVILATN 145
                 68999*******999998875 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.24      35     104 ..      42     117 ..      30     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                   EGGGHHHHHTT-EEE-GGGGG--TTS..---TT-S-SSS--EEEEE-GGG-EEE---SSTTS....EEEEEE-TTS CS
  Gln-synt_N_2  35 plasLeekLasGiGltkatlalserd..lidevedlgpvGelrLvpdPasavalpyaPdaaa....llgdlvevdg 104
                    la+   +  s iG+     +++e++  +i    +    G++ +v  Pa  +a++++ + a     l+g l  +dg
    EHU01738.1  42 RLAQALTRAMSEIGHCADCRTFTEQEicTICANPRRQQNGQICVVESPADIHAIEQTGQFAGryfvLMGHLSPLDG 117
                   456666778899999999999999983346666788999**********************99999*****99997 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.91     2e+03      57      81 ..      40      64 ..      35      69 .. 0.80
   2 ?   10.5   0.0   0.00029      0.65       1      72 [.      84     165 ..      84     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.91
    Toprim_2 57 Grkaakrlaellreagvrekirelp 81
                G + a+ l + ++e g++  +r++ 
  EHU01738.1 40 GMRLAQALTRAMSEIGHCADCRTFT 64
                8899999999999999888888765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00029
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalte............aalkllerypekkvvlalDnDkaGrkaakrlaellreag 72 
                 +v+E++ D  ++ q g+    ++  l+G  l++            ++ + le+++ ++v+la+     G++ a+ +ael  + g
  EHU01738.1  84 CVVESPADIHAIEQTGQF-AGRYFVLMGH-LSPldgigpadigldRLEQRLEKEAIQEVILATNPTVEGEATANYIAELCGQYG 165
                 79************9996.89********.7778899999999966666699997799******************99987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1482.34
//
Query:       EHU01739.1  [L=109]
Description: DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-33  113.6   8.0    4.4e-33  113.4   8.0    1.0  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.021   13.9   0.2      0.029   13.4   0.2    1.1  1  IIGP         Interferon-inducible GTPase (IIGP)
       0.08   13.1   0.0       0.11   12.7   0.0    1.2  1  CARM1        Coactivator-associated arginine methyltransferas


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   8.0   7.4e-37   4.4e-33       1      90 [.      11      99 ..      11     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 7.4e-37
                 HHHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--X CS
  YbaB_DNA_bd  1 mkqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskltggl 90
                 mkqaq+mq km+++qee+a+ ev+g+sg g+VkVt+ng ++++++++dpsll+ +dk+mLedli+aA+ndA + ++e+++e+m+++ +g+
   EHU01739.1 11 MKQAQQMQDKMAQVQEEIAALEVTGESGAGMVKVTINGAHNCRRVEVDPSLLE-DDKDMLEDLIAAAFNDAARGIDEAQKEKMASVSSGM 99
                 9**************************************************96.88*******************************999 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   4.9e-06     0.029      15      49 ..       8      42 ..       6      50 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-06
                T-HHHHHHHHHHHHHHHHT--EEEEEEESTTSSHH CS
        IIGP 15 gnlqkvvsiikeaikeiesaklkiavtGdsGnGks 49
                gnl+k  +++++ ++++++ +  + vtG+sG+G+ 
  EHU01739.1  8 GNLMKQAQQMQDKMAQVQEEIAALEVTGESGAGMV 42
                89*******************************96 PP

>> CARM1  Coactivator-associated arginine methyltransferase 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05      0.11      18      68 ..       8      57 ..       3      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
       CARM1 18 GeiqrhseqqplrlevkttedaaeialsnteevcvfkcsvsrdteCsrvgk 68
                G++ ++++q + ++  +++e+ a + ++ +  + ++k++++   +C rv+ 
  EHU01739.1  8 GNLMKQAQQMQDKM-AQVQEEIAALEVTGESGAGMVKVTINGAHNCRRVEV 57
                67777777777665.7999******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1128  (0.0629148); expected 358.6 (0.02)
Passed bias filter:                      773  (0.0431145); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 851.94
//
Query:       EHU01740.1  [L=658]
Description: DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-56  190.0   5.0    4.7e-56  188.8   5.0    1.7  1  DNA_pol3_tau_5   DNA polymerase III tau subunit V interacting
    7.7e-43  146.1   0.0    1.1e-42  145.5   0.0    1.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    1.8e-34  118.7   2.5    1.8e-34  118.7   2.5    2.8  3  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
    7.4e-19   68.1   9.9    7.4e-19   68.1   9.9    2.8  2  DNA_pol3_tau_4   DNA polymerase III subunits tau domain IV Dn
    9.2e-12   45.5   0.0    2.5e-11   44.1   0.0    1.7  1  AAA              ATPase family associated with various cellul
    1.9e-06   27.7   0.0      9e-05   22.3   0.0    2.3  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.3e-06   27.4   0.2    2.2e-05   24.8   0.0    2.4  2  AAA_22           AAA domain
    9.6e-06   25.6   0.0    2.5e-05   24.3   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00034   21.2   0.0     0.0008   20.0   0.0    1.7  1  AAA_18           AAA domain
    0.00043   20.1   0.0     0.0019   17.9   0.0    2.1  1  AAA_30           AAA domain
    0.00072   19.6   0.1        0.2   11.7   0.0    2.4  2  ResIII           Type III restriction enzyme, res subunit
    0.00083   19.8   0.2    0.00083   19.8   0.2    4.3  1  AAA_16           AAA ATPase domain
     0.0011   18.8   0.1     0.0021   17.9   0.1    1.4  1  DNA_pol3_delta   DNA polymerase III, delta subunit
     0.0011   19.0   0.0      0.003   17.6   0.0    1.7  1  AAA_14           AAA domain
      0.007   16.1   0.0      0.012   15.4   0.0    1.3  1  AAA_24           AAA domain
  ------ inclusion threshold ------
      0.011   15.0   0.2       0.97    8.6   0.0    2.2  2  TIP49            TIP49 P-loop domain
       0.03   14.3   0.1      0.074   13.1   0.1    1.6  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.031   13.8   0.0        1.4    8.4   0.0    2.2  2  AAA_7            P-loop containing dynein motor region
      0.067   13.5   0.7       0.24   11.7   0.1    2.4  1  AAA_assoc_2      AAA C-terminal domain
      0.077   12.4   0.1       0.17   11.3   0.1    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.098   12.8   0.1       0.36   10.9   0.1    2.0  1  SKI              Shikimate kinase
        1.5    9.1   3.7        2.5    8.4   0.2    3.0  3  AAA_19           AAA domain
        2.1    8.7   5.2         91    3.5   0.0    4.0  3  Nif11            Nif11 domain


Domain annotation for each model (and alignments):
>> DNA_pol3_tau_5  DNA polymerase III tau subunit V interacting with alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   5.0     6e-59   4.7e-56       1     142 []     515     655 ..     515     655 .. 0.99

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 6e-59
                     XXXS-SSHHHHHHHHHHHHHH-HHHHHHHHHT--SHHHHHHHTEEEEE-SSE.EEEEE-GGGTTT--HHHHHHHHHHHHHHHSS--EEEEEE--- CS
  DNA_pol3_tau_5   1 alehektpelaaklieealerdeWaaeieklklpklvkqlalnsvleqkeedkilLhlrssqkhLnsdsaqkeLaeaLsellgkeveleitlddd 95 
                     al+hek+pelaa+l+eea++rd+Waae++ l lpklv+qlaln+++e+ +++ i+Lhlrssq+hLns+saq++L+ aLs++ g++vel++++dd+
      EHU01740.1 515 ALKHEKNPELAARLAEEAQQRDAWAAEVAGLPLPKLVQQLALNAWKET-TDQGICLHLRSSQRHLNSASAQQALTAALSQVAGHQVELSVIEDDN 608
                     89*********************************************9.8888****************************************** PP

                     TSS--HHHHHHHHHHHHHHHHHHHHHHT-SXXXXXXXXXXXXXXXXX CS
  DNA_pol3_tau_5  96 eeqkTPlelrqaiyeekleqAkqsleaDkkvqllqqrFdAeldedsi 142
                     +++ TPle+rqaiyeekl+qA+qs+ +D+++q+l+++FdA+lde+si
      EHU01740.1 609 PTVLTPLEWRQAIYEEKLAQARQSILSDSHIQTLRRFFDADLDEESI 655
                     **********************************************9 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.0   1.5e-45   1.1e-42       1     162 [.      20     178 ..      20     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 1.5e-45
  DNA_pol3_delta2   1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqireliee 94 
                      gqe++l+ l + l+ gr++hayLf+G++g+gk ++a  lak l+ce + + +pcg+c++c++ieqg + D+i i+  ++    k+++ r+l ++
       EHU01740.1  20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGQCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDN 110
                      69999**********************************************************************9999...9*********** PP

  DNA_pol3_delta2  95 lsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                      ++  p  ++ k+++i+++ ++++++ NalLktlEEP++++ f+L t+d++kl  ti SRc ++++++l
       EHU01740.1 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178
                      ****************************************************************9976 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         2   1.5e+03      89     107 ..     160     178 ..     123     186 .. 0.76
   2 ?   -3.2   0.0         9     7e+03      17      44 ..     201     228 ..     198     228 .. 0.84
   3 !  118.7   2.5   2.3e-37   1.8e-34       1     140 [.     232     365 ..     232     369 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2
  DNA_pol3_gamma3  89 eklsleqLqrlWqlllkgi 107
                      +kl+++ L+r+ q+ lk++
       EHU01740.1 160 QKLPVTILSRCLQFHLKAL 178
                      7999999*******99987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9
  DNA_pol3_gamma3  17 rlldlleallegdaaaalaelreqyaaG 44 
                      r l+ll   ++g +++al  +++++a G
       EHU01740.1 201 RALQLLARAADGSMRDALSLTDQAIAMG 228
                      5688999999999999999999988766 PP

  == domain 3  score: 118.7 bits;  conditional E-value: 2.3e-37
  DNA_pol3_gamma3   1 vsaaqVrdmLGladrarlldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeeererlkelaeklsle 94 
                      v+ a+V +mLG++d ++ l llea+++g+ ++++a l++++++G+d++++l ++l llh+++++++lp++ +d+  +e+++ rl+ela+ ++++
       EHU01740.1 232 VTSATVGAMLGTLDDEQPLGLLEAVVDGNGEQVMALLAQAASRGVDWEALLVEMLRLLHRIAMVQLLPASLNDD--EESNALRLRELARVVPPA 323
                      7899****************************************************************766665..89**************** PP

  DNA_pol3_gamma3  95 qLqrlWqlllkgieevknapdpraaaEmvLlRlaaaaslptpeeal 140
                      +Lq+++q ll g+++++ apd+r+++Em+LlR++a    ++p+ a+
       EHU01740.1 324 DLQLYYQTLLMGRKDLPLAPDRRMGIEMALLRALA----FHPKAAV 365
                      **********************************9....7776665 PP

>> DNA_pol3_tau_4  DNA polymerase III subunits tau domain IV DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   9.9   9.4e-22   7.4e-19       2      81 .]     437     513 ..     434     513 .. 0.91
   2 ?   -0.8   0.1       2.9   2.3e+03      16      35 ..     579     599 ..     573     630 .. 0.81

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 9.4e-22
  DNA_pol3_tau_4   2 qlareqketktKKseaAs..akpvesvLeRlAsvteraaqvspasasaeqeekpekkeaYrWkptqkveeekkkevTPkaLk 81 
                     ql r q+++k+KKse+A+  a+p++s+LeRlAsvter+ q++ ++ + e   +p kkeaYrWk+ ++v e+ ++++TPkaL+
      EHU01740.1 437 QLLR-QGANKAKKSEPAApgARPASSALERLASVTERS-QQRVRERAPE---APVKKEAYRWKALTPVTEAAAPVATPKALR 513
                     6778.9********************************.7777666555...68899***********************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.9
  DNA_pol3_tau_4  16 eaAsakpv.esvLeRlAsvte 35 
                     ++Asa+++ +++L  +A ++ 
      EHU01740.1 579 NSASAQQAlTAALSQVAGHQV 599
                     678888888999999997654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   3.2e-14   2.5e-11       2     125 ..      42     171 ..      41     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
                 EEESSTTSSHHHHHHHHHHHHTHE........................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve........................fleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaks 73 
                 l++G+ G+GKT++a+ +ak l+ e                        ++ei++++ +      + +++r+l+++++      + ++ +iDE++ l ++
  EHU01740.1  42 LFSGTRGVGKTTIARLLAKGLNCEtgitatpcgqcdncreieqgrfvdLIEIDAASRT------KVEDTRDLLDNVQYAPargRFKVYLIDEVHMLSRH 134
                 89******************97555555666677777666666666668888888888......566666666665433345456***********999 PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSS CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfd 125
                 +            n+Ll+ l++  +   +v +++at++p+kl+  +l +R+ 
  EHU01740.1 135 S-----------FNALLKTLEEPPS---HVKFLLATTDPQKLPVTIL-SRCL 171
                 9...........***********99...5******************.9985 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-07     9e-05       2      68 ..      11      73 ..      10      82 .. 0.87
   2 ?    3.0   0.0       0.1        79      85     110 ..     120     145 ..      90     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.2e-07
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPv 68
                rP+ +++ +gqe+v + l+  ++  +         l++G  G+Gktt+a+++ak l+ +  it++P 
  EHU01740.1 11 RPQAFADVVGQEHVLTALANGLSLGRI----HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPC 73
                9*************9988776665544....445799**************************9996 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
      RuvB_N  85 kdvlfideihrlsraveevlysamed 110
                  +v +ide+h lsr+  + l +++e+
  EHU01740.1 120 FKVYLIDEVHMLSRHSFNALLKTLEE 145
                 47999*********999988888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.8e-08   2.2e-05       9     128 ..      42     155 ..      38     160 .. 0.83
   2 ?   -1.5   0.1       3.6   2.8e+03      37      97 ..     540     604 ..     511     606 .. 0.60

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.8e-08
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdl.lrellralglelka..erlsseellealeqalraravielliiDEaqhl 103
                 +  G  G+GKTt +r l++ l+        + + ++ t+ +++ + +++   +++  ++ ++ +  +  ++++ll+ ++ a  + +  ++ +iDE++ l
  EHU01740.1  42 LFSGTRGVGKTTIARLLAKGLN--------CETGITATPCGQCdNCREIeQGRFVDLIEIDAASrtKVEDTRDLLDNVQYAPARGRF-KVYLIDEVHML 131
                 56799****************6........999999999999998888877788888887777777788999999888888888888.9********** PP

      AAA_22 104 rseealeeLrsllnlsrkgvqliLv 128
                  s   ++ L + l+   ++v+++L+
  EHU01740.1 132 -SRHSFNALLKTLEEPPSHVKFLLA 155
                 .999999996666557777777776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.6
      AAA_22  37 e........erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraraviellii 97 
                          + ++++  ++ ++t+ + ++ +l +   + ++a   s ++ l+a   ++  ++v el +i
  EHU01740.1 540 AevaglplpKLVQQLALNAWKETTDQGICLHLRSSQRHLNSA---SAQQALTAALSQVAGHQV-ELSVI 604
                 256666554445555777777777777777777766655555...666666555555555555.56555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.3e-08   2.5e-05       3      95 ..      42     149 ..      40     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.3e-08
                 EEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--................--------......G-SEEEEESGGG--HHHHHHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik......ngttslvd.splvraar......egeilvlDEveraesevlnsLl 86 
                 l  G  G+gK+++a+ la+ l  ++ ++   + +  + +++ ++r ++       ++t+ +d   l ++++      + +++++DEv++++++ +n+Ll
  EHU01740.1  42 LFSGTRGVGKTTIARLLAKGLncETGITATPCGQCDNCREIEQGRFVDlieidaASRTKVEDtRDLLDNVQyapargRFKVYLIDEVHMLSRHSFNALL 140
                 56799****************55555677888888899999999998888888955555544256777887888879999******************* PP

                 HHHHSSEEE CS
       AAA_5  87 slleerrll 95 
                 + lee   +
  EHU01740.1 141 KTLEEPPSH 149
                 ***996655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-06    0.0008       3      81 ..      43     127 ..      42     155 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...........gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidg 81 
                  +Gt GvGKtt+a+ L+k l++            +n+r++ + +   l  + +a +++k++d+     lld+++ +++ ++  k+++id 
  EHU01740.1  43 FSGTRGVGKTTIARLLAKGLNCetgitatpcgqCDNCREIEQGRFVDL-IEIDAASRTKVEDTRD---LLDNVQYAPA-RGRFKVYLIDE 127
                 68*****************99999777776666555555555433332.2222245555555554...5555555443.66666666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.5e-06    0.0019      22     177 ..      42     217 ..      27     229 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.5e-06
      AAA_30  22 vltGpAGtGKttalkalreaweaa.ggrviglAptgka..AkvLae...........elgieastiakllkrlkgrarlepg.tllivDEagmvdtkql 105
                 +  G  G GKtt+ + l++ ++ + g   i ++p g+    +++++           ++ ++ + +  ll++ +  a  + + +++++DE+ m++ +++
  EHU01740.1  42 LFSGTRGVGKTTIARLLAKGLNCEtG---ITATPCGQCdnCREIEQgrfvdlieidaASRTKVEDTRDLLDNVQY-APARGRfKVYLIDEVHMLSRHSF 136
                 67899**************9999966...4444444430034444333333222211333455555555555543.3444556**************** PP

      AAA_30 106 aallkaaek..agakvilvGDerQlasVea.Ggvlrdlvea..agigtaeLtevvRq....keseeraaalalregdaeea 177
                 +allk +e+  +++k +l+  + Q  +V+   + l+  ++a   ++   +L++v  q    +e++  ++  + ++g +++a
  EHU01740.1 137 NALLKTLEEppSHVKFLLATTDPQKLPVTIlSRCLQFHLKAldVDQIRQQLDNVLEQeqivREPRALQLLARAADGSMRDA 217
                 *******99555788888888888877765344444444332212233445555555222223444444444445555555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.021        16       8      48 ..      21      62 ..      17      71 .. 0.81
   2 !   11.7   0.0   0.00025       0.2     110     159 ..      92     145 ..      74     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.021
                HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  8 Qeeaienlleklks.krdkrglikmaTGtGKTlvaaklierl 48
                Qe+++++l++ l+  + ++ +l+  + G+GKT +a  l++ l
  EHU01740.1 21 QEHVLTALANGLSLgRIHHAYLFSGTRGVGKTTIARLLAKGL 62
                8888888888776545667899************98777655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00025
                 EHHHHHHTH.............HHHTTT-SEEEEETGGGTTS.TTTHHHHHT--- CS
      ResIII 110 tiqsldadseee.....eeeseellrdrfdviiiDEaHrlgakkswreilekfke 159
                 +i+++++ + e+     ++ +    r+rf+v++iDE+H l++ +s++++l+ ++e
  EHU01740.1  92 EIDAASRTKVEDtrdllDNVQYAPARGRFKVYLIDEVHMLSR-HSFNALLKTLEE 145
                 4444444444446777788899999*****************.999999887755 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   1.1e-06   0.00083       3      84 ..      19      90 ..      17     155 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-06
      AAA_16  3 vGReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdggif..lrgkcdqlesaipysalaqalareellrq 84
                vG e+ l +L++ l+    gr  ++ l+sG +GvGK++++r l++ l+ + gi+    g+cd + ++         +++ +++  
  EHU01740.1 19 VGQEHVLTALANGLS---LGRIhHAYLFSGTRGVGKTTIARLLAKGLNCETGITatPCGQCDNC-RE---------IEQGRFVDL 90
                566666666666555...4444589********************8888866655577888888.22.........222122222 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.7e-06    0.0021      75     164 ..     131     216 ..     121     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.7e-06
                     S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHH CS
  DNA_pol3_delta  75 lnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealelLlelvennlsa 164
                     l+ +  ++L ++l+++p ++ ++l ++    + +kl  ++ ++   ++ k l+ ++++++++++++++++  e+ al+lL+ +  ++++ 
      EHU01740.1 131 LSRHSFNALLKTLEEPPSHVKFLLATT----DPQKLPVTILSRCLQFHLKALDVDQIRQQLDNVLEQEQIVREPRALQLLARAADGSMRD 216
                     56788899****************999....355655555557999************************************99999875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.9e-06     0.003       4      86 ..      40     143 ..      38     167 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.9e-06
      AAA_14   4 ilvitGaRrvGKTtllkqlikell................vkkesilyinldderd...kkladpekllelileklke..ekktylflDEiqev..pew 79 
                 +++ +G R vGKTt+++ l+k l                  + e+  +++l + +    +k +d+++ll+ ++    +   + ++ ++DE++++   ++
  EHU01740.1  40 AYLFSGTRGVGKTTIARLLAKGLNcetgitatpcgqcdncREIEQGRFVDLIEIDAasrTKVEDTRDLLDNVQYA--ParGRFKVYLIDEVHMLsrHSF 136
                 67889***************9999776666666666555533344444444444442112222333444444433..1334667788888888733234 PP

      AAA_14  80 ekalksl 86 
                    lk l
  EHU01740.1 137 NALLKTL 143
                 4444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-05     0.012       8      85 ..      44     139 ..      40     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
      AAA_24   8 yGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie...................swedfldevvel..aaeladyktlviDtideleelclaev 85 
                  G  g+GKTt+a+ l   +  +++e G  ++   + ++++                   ++ed +d ++ +  a +  ++k++ iD +  l ++ ++ +
  EHU01740.1  44 SGTRGVGKTTIARLL---AKGLNCETGITATPCGQCDNCReieqgrfvdlieidaasrtKVEDTRDLLDNVqyAPARGRFKVYLIDEVHMLSRHSFNAL 139
                 5999***********...667899**************99998888888888888888866666666555577777777***********999987766 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.023        18      47      81 ..      36      69 ..      12      84 .. 0.78
   2 ?    8.6   0.0    0.0012      0.97     281     309 ..     122     150 ..      77     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.023
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 47 klaGravLlaGpsgtGktalaiaiskelgedvpfv 81
                ++  +a L++G +g Gkt +a  ++k l+ ++  +
  EHU01740.1 36 RIH-HAYLFSGTRGVGKTTIARLLAKGLNCETGIT 69
                444.688*******************999776655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlDiecfsylnraleselaPi 309
                 v  iDevhml   +f  l ++le++ + +
  EHU01740.1 122 VYLIDEVHMLSRHSFNALLKTLEEPPSHV 150
                 789********************987766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.5e-05     0.074      18      48 ..      37      68 ..      19      73 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.5e-05
                HTEEEEEEESTTSSHHHHHHHHHHHTT--.-- CS
        TsaE 18 lgdvilLeGdLGaGKTtlvrglakalgve.ev 48
                ++++ l++G  G+GKTt++r lak+l++e  +
  EHU01740.1 37 IHHAYLFSGTRGVGKTTIARLLAKGLNCEtGI 68
                366799********************987544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0018       1.4      32      60 ..      37      65 ..      26      76 .. 0.86
   2 ?    2.9   0.0     0.089        70      92     118 ..     111     137 ..      79     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0018
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkldke 60
                 ++  l+ G+ G+GKt+i++ l k l+ e
  EHU01740.1 37 IHHAYLFSGTRGVGKTTIARLLAKGLNCE 65
                67899**************9999988855 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.089
       AAA_7  92 gvygPpggkklvvFvDDlnmpakekyg 118
                   y P+ g+  v+ +D+++m  +  ++
  EHU01740.1 111 VQYAPARGRFKVYLIDEVHMLSRHSFN 137
                 479*****************9988776 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00031      0.24       3      39 ..     194     230 ..     192     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaea 39 
                  +++  e+ al++la++adG +R aL l + a+++ e 
   EHU01740.1 194 EQIVREPRALQLLARAADGSMRDALSLTDQAIAMGEG 230
                  57778999********************998887654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00022      0.17       2      43 ..      15      59 ..      14      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
  Mg_chelatase  2 lkdvkGqeeakraleiaaa.G..gHnlllvGppGsGKtmlakrlp 43
                  ++dv+Gqe+  +al    + G  +H  l+ G+ G GKt +a+ l+
    EHU01740.1 15 FADVVGQEHVLTALANGLSlGriHHAYLFSGTRGVGKTTIARLLA 59
                  789*******9999865542433477899************9886 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00046      0.36       1      19 [.      47      65 ..      47      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00046
                TTSSHHHHHHHHHHHHTSE CS
         SKI  1 mGaGKstvGkllAkklgle 19
                +G+GK+t+++llAk l++e
  EHU01740.1 47 RGVGKTTIARLLAKGLNCE 65
                79**************996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0032       2.5      95     137 ..     111     158 ..      36     165 .. 0.57
   2 ?   -2.1   0.0       5.7   4.5e+03      56      78 ..     212     255 ..     183     312 .. 0.49
   3 ?   -1.6   0.1         4   3.2e+03      47      62 ..     466     481 ..     432     539 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0032
      AAA_19  95 eeekklqeee.llivDEfqdvd.elqyrLlkallgekkk...lllvGD 137
                  +  + + ++ + ++DE+ +++    ++Llk+l ++  +   ll+  D
  EHU01740.1 111 VQYAPARGRFkVYLIDEVHMLSrHSFNALLKTLEEPPSHvkfLLATTD 158
                 23344555666999********9*********9866544344555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.7
      AAA_19  56 kelrerlaalgae.........atTiHrlal...............l 78 
                   +r++l+  +++           T+                     
  EHU01740.1 212 GSMRDALSLTDQAiamgegsvtSATVG---AmlgtlddeqplglleA 255
                 455555533222244444433322222...12222333333333320 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4
      AAA_19  47 lvaftgrAakelrerl 62 
                 l+++t+r+ +++rer 
  EHU01740.1 466 LASVTERSQQRVRERA 481
                 5677888888888876 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.12        91       8      40 ..      86     118 ..      85     118 .. 0.93
   2 ?    3.3   0.4      0.14   1.1e+02       9      33 ..     173     197 ..     171     203 .. 0.87
   3 ?    0.8   0.3      0.82   6.4e+02      17      38 ..     510     531 ..     504     534 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.12
       Nif11   8 aFlekvkqDpalreqlkacsdheevvalAkeaG 40 
                 +F++ ++ D a r+++ +  d  + v++A ++G
  EHU01740.1  86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118
                 79**********************999997776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.14
       Nif11   9 FlekvkqDpalreqlkacsdheevv 33 
                 F  k+   +++r+ql+++ + e++v
  EHU01740.1 173 FHLKALDVDQIRQQLDNVLEQEQIV 197
                 556788899**************98 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.82
       Nif11  17 palreqlkacsdheevvalAke 38 
                 +alr  lk  +++e  ++lA e
  EHU01740.1 510 KALRSALKHEKNPELAARLAEE 531
                 7899999999999999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.37
# Mc/sec: 5350.81
//
Query:       EHU01741.1  [L=183]
Description: adenine phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-14   53.4   0.0    2.4e-14   53.2   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
    0.00076   19.0   0.0      0.001   18.6   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.027   14.0   0.0    1.3  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0     4e-18   2.4e-14       2     123 ..      31     155 ..      30     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 4e-18
                   HHHTTT---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEE CS
  Pribosyltran   2 gsellenpaildavarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVl 91 
                   +++lle p++++a   l+ e++++    ++ vvg + +G+ f+  +a  L++ ++ vrk  + p  + + +  ++          ++ ++  g  Vl
    EHU01741.1  31 VTSLLEDPNAYAASIALLVERYRN--KGITKVVGTEARGFLFGAPVALGLGLGFVPVRKPGKLPRETYSESYELE--YgtdqlelHKDAIQPGDVVL 123
                   5789999**9*************9..9999****************************99999999999976554..35699*************** PP

                   EE-SEESSSHHHHHHHHHHHCC-BSEEEEEEE CS
  Pribosyltran  92 iVDDildtGgTllaalelLkekgpeevriavl 123
                   +VDD+l+tGgTl+a+++l++++g e+  +a +
    EHU01741.1 124 VVDDLLATGGTLEATIKLIRRAGGEVKDAAFI 155
                   ************************85555544 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-07     0.001     120     157 ..     118     155 ..      84     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.7e-07
     UPRTase 120 aertvlllDpviaTGgsaaaaiqlLkergvgeekIlvl 157
                   + vl++D ++aTGg++ a i+l++++g ++++  ++
  EHU01741.1 118 PGDVVLVVDDLLATGGTLEATIKLIRRAGGEVKDAAFI 155
                 4456************************9999887766 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.5e-06     0.027     114     165 ..     112     165 ..     100     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-06
    PRTase_2 114 deellaaakelvLvDDEistGktalnliralqeklpr..kryvvvslvdwrsee 165
                 ++++++  + +++vDD ++tG t+ ++i+ ++++  +  +   +++l d+  e+
  EHU01741.1 112 HKDAIQPGDVVLVVDDLLATGGTLEATIKLIRRAGGEvkDAAFIINLFDLAGEA 165
                 56667777778889******************9954443889999****99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1580.69
//
Query:       EHU01742.1  [L=129]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-41  141.1  14.9    1.6e-41  140.9  14.9    1.0  1  DUF454    Protein of unknown function (DUF454)
  ------ inclusion threshold ------
      0.051   13.9   4.5      0.051   13.9   4.5    2.3  2  DUF308    Short repeat of unknown function (DUF308)
      0.068   13.1   0.4       0.11   12.5   0.4    1.4  1  SulA      Cell division inhibitor SulA
       0.28   10.8   6.7       0.37   10.4   6.7    1.1  1  PRA1      PRA1 family protein


Domain annotation for each model (and alignments):
>> DUF454  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9  14.9   3.6e-45   1.6e-41       1     114 [.       3     116 ..       3     117 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 3.6e-45
      DUF454   1 rllllllGllslalGviGivlPlLPTtpFlLlAafcfarssprlhrwLlehklfgpyirdwrekraitlkaKvialllmllsllislllveslwvkill 99 
                 r++ll+lG+l+++lG++GivlPlLPTtpF+LlAa+cfarsspr+h+wLl ++ fg+yir+w+++r+++  aK +a++l+++++++sl+lv++lwv+i+l
  EHU01742.1   3 RIVLLTLGWLAIVLGILGIVLPLLPTTPFMLLAAWCFARSSPRFHHWLLWKSPFGRYIRHWQQHRGMPPGAKSRAIVLIVATFTLSLWLVPVLWVRIML 101
                 789************************************************************************************************ PP

      DUF454 100 alvllvvllyilrip 114
                 +++l+++ll+++rip
  EHU01742.1 102 GIMLCLLLLFMWRIP 116
                 *************98 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.5   1.1e-05     0.051       2      32 ..       9      39 ..       8      43 .. 0.94
   2 ?    1.3   4.5       0.1   4.5e+02      37      67 ..      78     108 ..      75     114 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
      DUF308  2 lGillivlGilalllPvaallalvllfGill 32
                lG l+ivlGil ++lP++ ++ ++ll ++++
  EHU01742.1  9 LGWLAIVLGILGIVLPLLPTTPFMLLAAWCF 39
                79***************************98 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.1
      DUF308  37 ivqiiaafaarkknrggrwlglllGilylia 67 
                 iv i+a+f+   +     w++++lGi++ ++
  EHU01742.1  78 IVLIVATFTLSLWLVPVLWVRIMLGIMLCLL 108
                 5556666666666666666666666665554 PP

>> SulA  Cell division inhibitor SulA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   2.4e-05      0.11      57      79 ..      48      70 ..      39      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
        SulA 57 rWllWltPqqklsreWlqqaglP 79
                 WllW +P  +  r+W q+ g+P
  EHU01742.1 48 HWLLWKSPFGRYIRHWQQHRGMP 70
                7********************98 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.7   8.2e-05      0.37      47     127 ..      13     109 ..       6     112 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.2e-05
        PRA1  47 llvlllslltnplslivllllvlawlflyf.lr.......seplvlfgrelsdr........vvlivllvvsvlllfltgavlvllwalliglllvl 127
                 ++vl + +++ pl   + ++l++aw+f     r       ++p+ ++ r+ +++           ivl+v+++ l +++ +vl++ ++l+i l+l l
  EHU01742.1  13 AIVLGILGIVLPLLPTTPFMLLAAWCFARSsPRfhhwllwKSPFGRYIRHWQQHrgmppgakSRAIVLIVATFTLSLWLVPVLWVRIMLGIMLCLLL 109
                 67888888999999999999*******9996224567777777778888885557******988888888999998999888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1032.03
//
Query:       EHU01743.1  [L=176]
Description: primosomal replication protein N'' [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-38  132.2  14.6    2.2e-38  131.9  14.6    1.0  1  PriC        Primosomal replication protein priC
     0.0034   17.4   2.7     0.0034   17.4   2.7    2.0  2  U3_assoc_6  U3 small nucleolar RNA-associated protein 6
  ------ inclusion threshold ------
      0.087   13.2   0.1       0.65   10.4   0.2    2.1  2  Toxin-JAB1  JAB-like toxin  1


Domain annotation for each model (and alignments):
>> PriC  Primosomal replication protein priC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9  14.6   3.6e-42   2.2e-38       1     170 [.       8     167 ..       8     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 3.6e-42
                 HHHHHHHHHHHHHSST..TTTSS---S----SS--S--SSHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSST.. CS
        PriC   1 srLeqqleqLeqqvaqlDqakeeakqarFdrqLFsqrsaklsdYleeiektlkqLekaveenraeqvaflaerlvaqieAlqrelattelrkkeakqkk 99 
                 +rL+  l +L+q + +  + + e +++rFd+qLF+ ++++l+dYl+eie+++++L++a e+  +e+ ++la +lv+qi+Alqre +t++lr+++++++ 
  EHU01743.1   8 QRLHHCLLTLRQAIHS--HPDGECRSPRFDNQLFTMKGTRLADYLQEIEHNYQRLCQAGED--VERSQWLAGHLVDQIAALQREASTQQLRSRAERARP 102
                 68999999*******9..99**************************************995..8*****************************999854 PP

                 ...TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT....T--THHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PriC 100 ksrkkshqlyqelakhqeyerrLeemiaereqqlekaqslaekqklqqeilaleqRlgRCrqaiskiEeri 170
                       +  +q+  +++eyerrL++mi++req+l+ a+++a +q+l++++++le+R++RCrqai ++E  +
  EHU01743.1 103 ------SARQQKYLEYREYERRLQAMIDQREQRLALAETFAVQQQLKKDLEVLEGRMARCRQAIRSVEWAM 167
                 ......55689999*****************************************************9765 PP

>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.62   3.7e+03      40      52 ..      43      55 ..      34      63 .. 0.66
   2 !   17.4   2.7   5.7e-07    0.0034      38      72 ..     101     135 ..      92     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.62
  U3_assoc_6 40 gkkkedflkYiey 52
                g +++d+l+ ie 
  EHU01743.1 43 GTRLADYLQEIEH 55
                5566777766654 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.7e-07
  U3_assoc_6  38 rrgkkkedflkYieyElnLeklrkkRrkrlklkkk 72 
                 r++++++++l+Y eyE +L++++ +R +rl l+++
  EHU01743.1 101 RPSARQQKYLEYREYERRLQAMIDQREQRLALAET 135
                 78889*************************99333 PP

>> Toxin-JAB1  JAB-like toxin  1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00011      0.65      58      79 ..      11      32 ..       2      38 .. 0.77
   2 ?   -0.3   0.0      0.23   1.4e+03      20      30 ..     161     171 ..     154     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
  Toxin-JAB1 58 lkagytireliHsHpdggtkkp 79
                 +  +t r+ iHsHpdg+  +p
  EHU01743.1 11 HHCLLTLRQAIHSHPDGECRSP 32
                55678999********877666 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
  Toxin-JAB1  20 tkvEwslagvg 30 
                 ++vEw ++ ++
  EHU01743.1 161 RSVEWAMSLSD 171
                 79****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1269  (0.0707792); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1399.31
//
Query:       EHU01744.1  [L=51]
Description: uncharacterized DUF2496 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-22   77.8   1.0    4.4e-22   77.6   1.0    1.1  1  DUF2496    Protein of unknown function (DUF2496)
  ------ inclusion threshold ------
      0.055   13.6   0.1       0.08   13.1   0.1    1.4  1  MbeD_MobD  MbeD/MobD like


Domain annotation for each model (and alignments):
>> DUF2496  Protein of unknown function (DUF2496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   1.0   4.9e-26   4.4e-22       1      43 []       2      44 ..       2      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 4.9e-26
     DUF2496  1 sLenApdevkLAVDLIyLLEsneiepevaLaALeIVkrDfekK 43
                sLe+Ap+evkLAVDLI+L+E+++ + e++L+AL+IV+rD+ekK
  EHU01744.1  2 SLETAPEEVKLAVDLIQLFEEHQLSVETVLSALAIVQRDYEKK 44
                8*****************************************9 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.9e-06      0.08       7      25 ..      29      47 ..      20      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.9e-06
   MbeD_MobD  7 qLLsAlEqLQqdYeqrlqe 25
                  LsAl   Q+dYe++++e
  EHU01744.1 29 TVLSALAIVQRDYEKKRDE 47
                579*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 488.08
//
Query:       EHU01745.1  [L=212]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-44  150.2   0.2    3.7e-44  149.7   0.2    1.2  1  TetR_C_2   MAATS-type transcriptional repressor, C-terminal r
    2.7e-19   68.7   0.3    4.5e-19   68.0   0.3    1.4  1  TetR_N     Bacterial regulatory proteins, tetR family
    0.00051   20.2   0.9    0.00071   19.8   0.1    1.6  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
     0.0013   19.0   0.9       0.01   16.1   0.9    2.2  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
      0.004   17.2   0.0       0.19   11.9   0.0    2.3  2  TetR_C_17  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
       0.01   16.6   0.3      0.027   15.2   0.0    1.8  3  TetR_C_33  Tetracyclin repressor-like, C-terminal domain
      0.053   13.7   0.0      0.084   13.0   0.0    1.3  1  TetR_C_4   YsiA-like protein, C-terminal region
      0.096   13.0   0.1       0.21   11.9   0.1    1.7  1  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
      0.097   12.6   0.0         14    5.7   0.0    2.7  2  SUV3_C     Mitochondrial degradasome RNA helicase subunit C t
        0.1   12.8   0.1       0.89    9.8   0.0    2.1  2  UPF0122    Putative helix-turn-helix protein, YlxM / p13 like


Domain annotation for each model (and alignments):
>> TetR_C_2  MAATS-type transcriptional repressor, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.2     2e-47   3.7e-44       1     120 [.      84     203 ..      84     204 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 2e-47
    TetR_C_2   1 dPlqvlrelliyvLqsivedprqralleilfhKCEFvgemsavleirkelllaeysrleevlqeciekgllpanldlrraaiilraslsGllenwLfap 99 
                 dPl++lr +l+y+ q++++dp++ral+ei+fhKCEFvgem av++i++ lll++y+++e+vl++ci++g+lp+++++r+aa+i+r+++ G++e wLf+p
  EHU01745.1  84 DPLSILRAMLVYIFQATARDPQRRALMEIIFHKCEFVGEMAAVKSIQQSLLLERYNEIEDVLRQCIDAGQLPETFQTRQAALIMRSYVNGMMESWLFTP 182
                 8************************************************************************************************** PP

    TetR_C_2 100 esfdlkkeaealvdavldmlk 120
                   fdl ++a++lvda++dml+
  EHU01745.1 183 GKFDLVADAPELVDALIDMLR 203
                 *******************96 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.3   2.5e-22   4.5e-19       1      47 []      16      62 ..      16      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 2.5e-22
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                IldaA++lf+++G +at++++IA++A v++ga+Y++F++K++Ll+++
  EHU01745.1 16 ILDAALALFSKEGVSATSLADIASAASVTRGAIYWHFKNKADLLNEI 62
                9*******************************************996 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.9     7e+03       9      13 ..      17      21 ..       5      42 .. 0.51
   2 !   19.8   0.1     4e-07   0.00071      13     113 ..     100     202 ..      88     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.9
                HHCCS CS
    TetR_C_6  9 leall 13
                l+a+l
  EHU01745.1 17 LDAAL 21
                22222 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4e-07
                 STHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCH.HHHHHHHHHHH CS
    TetR_C_6  13 lpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerlaAlidGLwlraalapeeld.aeraralvrrh 109
                  ++d++rra +++ +  +  +   ++++ +q+ +  + ++++ ++l+++ + g+l++  ++++aA  + + ++G+  +++  p+ +d  + a +lv++ 
  EHU01745.1 100 TARDPQRRALMEIIFHKCEFVGEMAAVKSIQQSLLLERYNEIEDVLRQCIDaGQLPETFQTRQAALIMRSYVNGMMESWLFTPGKFDlVADAPELVDAL 198
                 4567777788888887777778888889999999999999***********************************************8899*******9 PP

                 HHHH CS
    TetR_C_6 110 ldal 113
                 +d l
  EHU01745.1 199 IDML 202
                 9986 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.9   5.7e-06      0.01      11     101 ..      89     185 ..      83     202 .. 0.74
   2 ?    1.4   0.1      0.22   3.9e+02      71      92 ..     183     204 ..     179     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.7e-06
   TetR_C_11  11 Lrallralae.alaspragallrallaeaqrdpela..ealrerlleprraalravlrrAvarGelradad...velvldlllgpllyrllltgepl 101
                 Lra+l  + + + ++p+ +al+  +++ ++   e+a  + +++ ll +r +++++vlr+ ++ G+l++      ++l++   +  ++  +l+t++ +
  EHU01745.1  89 LRAMLVYIFQaTARDPQRRALMEIIFHKCEFVGEMAavKSIQQSLLLERYNEIEDVLRQCIDAGQLPETFQtrqAALIMRSYVNGMMESWLFTPGKF 185
                 666666655416777**************998888744689999***********************975411145555556666666666666655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.22
   TetR_C_11  71 Gelradadvelvldlllgplly 92 
                 G  +  ad++ ++d+l+++l++
  EHU01745.1 183 GKFDLVADAPELVDALIDMLRL 204
                 6667778999999*99999986 PP

>> TetR_C_17  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.055        99      34      76 ..       3      45 ..       1      50 [. 0.83
   2 !   11.9   0.0    0.0001      0.19      25      86 ..     117     175 ..      96     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.055
                -HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SS-HHHHHH CS
   TetR_C_17 34 eeerrayleeRyerlvealkellqeGvergEfkPqlplesiak 76
                ++++ + le+R++ l +al  + +eGv+   +    +++s+++
  EHU01745.1  3 RKTKAQALETRHQILDAALALFSKEGVSATSLADIASAASVTR 45
                5678889********************9988877777777765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0001
                 HHHHHGG.GG-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SS-HHHHHHHHHHHHHHHH CS
   TetR_C_17  25 yEyflts.yreeerrayleeRyerlvealkellqeGvergEfkPqlplesiakylisfldGli 86 
                  E+       +  ++++l eRy++++++l + +++G     f+    +++ a ++ s+++G++
  EHU01745.1 117 CEFVGEMaAVKSIQQSLLLERYNEIEDVLRQCIDAGQLPETFQ----TRQAALIMRSYVNGMM 175
                 5655433133555889******998888888887777666665....5666777778888877 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.2   9.3e+03      48      56 ..      18      26 ..       4      50 .. 0.49
   2 ?   -2.9   0.0       6.3   1.1e+04      46      62 ..      88     104 ..      76     114 .. 0.54
   3 ?   15.2   0.0   1.5e-05     0.027      47     104 .]     141     202 ..     124     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.2
                HHHHGGG-- CS
   TetR_C_33 48 laalaalva 56
                 aala + +
  EHU01745.1 18 DAALALFSK 26
                333333333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.3
                 HHHHHHGGG---TH--C CS
   TetR_C_33  46 lllaalaalvaaglppa 62 
                 +l+a+l   ++a + ++
  EHU01745.1  88 ILRAMLVYIFQATARDP 104
                 44444444434444333 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.5e-05
                 HHHHHGGG---TH--CC..HHHHHHHHHHHHHHHHHHHHCT..TTTSSS-HHHHHHHHHHHH CS
   TetR_C_33  47 llaalaalvaaglppad..avaaaralwaalhGlvsLelfg..hfglpadpdalferlvdal 104
                 + ++l+++ +ag+ p+   +++aa+ +++ + G+    lf   +f+l+ad+ +l+++l+d+l
  EHU01745.1 141 IEDVLRQCIDAGQLPETfqTRQAALIMRSYVNGMMESWLFTpgKFDLVADAPELVDALIDML 202
                 6789999988888644447889**************99997447799************986 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.7e-05     0.084      70     131 ..     138     199 ..     118     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHTTSC-TT--HHHHHHHHHHHHHHHHHHHHHTTT-S-CGGGHHHHHHHHH CS
    TetR_C_4  70 ltlldeiiaeGkekGefkeeldvrlarqlifGtldevvtnWvmkdqkydlvalaeevyelli 131
                 ++ +++++ + +++G++ e++++r+a  ++   ++ ++ +W+ +  k+dlva a e  + li
  EHU01745.1 138 YNEIEDVLRQCIDAGQLPETFQTRQAALIMRSYVNGMMESWLFTPGKFDLVADAPELVDALI 199
                 466899*********************999**********************9988776665 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00012      0.21      30      84 ..     120     175 ..      83     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 HHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-SS-HHHHHHHHH.HHH CS
   TetR_C_24  30 lrelraLspehreeiralrreyerllrdlieeGvaagefedldpklaalail.gml 84 
                 + e+ a++  +++ + ++ +e+e++lr+ i++G+   +f++++++l++++ + gm+
  EHU01745.1 120 VGEMAAVKSIQQSLLLERYNEIEDVLRQCIDAGQLPETFQTRQAALIMRSYVnGMM 175
                 56888888888899999999999999999999999999977766666655441343 PP

>> SUV3_C  Mitochondrial degradasome RNA helicase subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.031        55       2      12 ..       8      18 ..       8      19 .. 0.88
   2 ?    5.7   0.0    0.0076        14      21      44 ..     154     177 ..     153     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.031
                HHHHHHHHHHH CS
      SUV3_C  2 erLEslhkvld 12
                + LE+ h++ld
  EHU01745.1  8 QALETRHQILD 18
                57********9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0076
                 -------HHHHHHHHHHHHHHHHH CS
      SUV3_C  21 fpevFpdrelaeelkkeveekIee 44 
                 +pe+F +r+ a  +++ v+ ++e 
  EHU01745.1 154 LPETFQTRQAALIMRSYVNGMMES 177
                 79****************999985 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0005      0.89      34      63 ..      32      61 ..       8      65 .. 0.88
   2 ?    0.7   0.0      0.35   6.3e+02      35      78 ..     119     162 ..      90     170 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0005
     UPF0122 34 lSlsEiAeefnvsrqavydnikrtekllek 63
                 Sl++iA    v+r a+y + k   +ll++
  EHU01745.1 32 TSLADIASAASVTRGAIYWHFKNKADLLNE 61
                59********************99999986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
     UPF0122  35 SlsEiAeefnvsrqavydnikrtekllekyEekLkllekykkre 78 
                  ++E+A  + ++++ + +  + +e++l +  ++ +l e +++r+
  EHU01745.1 119 FVGEMAAVKSIQQSLLLERYNEIEDVLRQCIDAGQLPETFQTRQ 162
                 45778888888888888888888888877777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1684.48
//
Query:       EHU01746.1  [L=400]
Description: multidrug efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   56.4   0.3    3.3e-15   55.7   0.3    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS
    8.3e-14   51.3   2.0    3.9e-13   49.1   2.0    2.1  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    4.3e-11   43.5   1.4    8.1e-08   32.9   0.1    3.0  2  HlyD_3           HlyD family secretion protein
    4.8e-10   39.1   6.8    3.2e-06   26.9   0.0    3.9  4  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.031   14.2   1.2       0.57   10.2   0.0    2.3  2  DUF3324          Protein of unknown function C-terminal (DUF3


Domain annotation for each model (and alignments):
>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.3   9.3e-19   3.3e-15       3      78 ..      40     360 ..      38     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 9.3e-19
                 EEEEEEEEEE......................................................................................... CS
                 xxxxxxxxxx......................................................................................... RF
        HlyD   3 avfvawaala......................................................................................... 12 
                 +v+v+++ +                                                                                          
  EHU01746.1  40 EVGVVTVKSEplkistelpgrtlayriaevrpqvsgiilkrnfiegseikageslyqidpatyqasydsakadlakaeanariaqltvnrykpllgtky 138
                 667777777777777777777777777777777777777777777777777777777777777777777777777777777777777888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  EHU01746.1 139 isqqdydnavataaqnnaavqaakanvetarinlaytkvsspisgrigkssvtegalvqsgqttalatvqqldpmyvdvtqssedflrlrselesgqlk 237
                 888888888888888888888888888888888888888888888888888888888888888888899999999999999999999999999999999 PP

                 .........................................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSBEEEE CS
                 .........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .........................................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispdrvpv 54 
                                                                          + +ld+++++++ +v+++A+++t tg+++++Vvg++++++ +
  EHU01746.1 238 qndgkanvtllmqngknyaqpgtlefsdvtvdqttgsitlraifpnpdkallpgmfvRARLDEGTNPNALLVPQQAVTRTPTGDASVMVVGADNKVEAR 336
                 999999999999999999999999999999999999999999999999999999999****************************************** PP

                 EEEEEEEETTEEEESSSS-TTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  55 rvvvekaqgpyyplriglkagalv 78 
                 ++++ +a g+++ +++glkag++v
  EHU01746.1 337 KIKAAQAIGDKWLVTEGLKAGERV 360
                 **********************98 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   2.0   1.1e-16   3.9e-13      18     214 .]      65     294 ..      60     294 .. 0.72

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.1e-16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX....XXXXXXXX.......................XXXXXXXXX CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLael....yspelvaaqeeyllalk....akkklkkke......................lleaarerL 86 
                 r+a+v ++v+G + k +   +g+++k+G+ L+++    y     +a++++ +a +    a       +                       +++a++  
  EHU01746.1  65 RIAEVRPQVSGIILKRNFI-EGSEIKAGESLYQIdpatYQASYDSAKADLAKAEAnariA-------QltvnrykpllgtkyisqqdydnAVATAAQ-- 153
                 8999*********999998.9************922223333444555555555544440.......034466667777777766666433333333.. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX....XXXXXXX......XXXXXXXXXX CS
    HlyD_D23  87 rllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdt..lftiadlstVWveaevyeqql....alvkvgq......kvevtvealp 173
                 ++  v++++ a++e  +    +++v++pisG + + +v+eG  vq g+t  l+t+++l+ ++v++    +++    + ++ gq      k++vt+   +
  EHU01746.1 154 NNAAVQAAK-ANVETARINLAYTKVSSPISGRIGKSSVTEGALVQSGQTtaLATVQQLDPMYVDVTQSSEDFlrlrSELESGQlkqndgKANVTLLMQN 251
                 455555444.7788888888999***********************987679***********998766665122223334443333346777777766 PP

                 XX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 174 gk..tfeGkvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 gk     G++++ + tvd++t ++++R+ ++Npd++L pgmf+
  EHU01746.1 252 GKnyAQPGTLEFSDVTVDQTTGSITLRAIFPNPDKALLPGMFV 294
                 6621557***********************************7 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00099       3.6       2      49 ..      69     115 ..      68     167 .. 0.83
   2 !   32.9   0.1   2.3e-11   8.1e-08       2     106 .]     177     291 ..     176     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00099
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgs 49 
                 +r  v+G++ + n  eg+ + ag+ l +i p +t+++ +  + adl++
  EHU01746.1  69 VRPQVSGIILKRNFIEGSEIKAGESLYQIDP-ATYQASYDSAKADLAK 115
                 7889**********99999**********95.8888887777777765 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 2.3e-11
      HlyD_3   2 lrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik.........kkgqkvtlkld..qgsdytlkgkierisptvdaktgay 87 
                 + +p++G++ + +v+eg  vq+g++  l+++   d + v+++ +++d  +++             k++++l   +g++y+ +g++e  + tvd++tg +
  EHU01746.1 177 VSSPISGRIGKSSVTEGALVQSGQTtaLATVQQLDPMYVDVTQSSEDFLRLRselesgqlkQNDGKANVTLLmqNGKNYAQPGTLEFSDVTVDQTTGSI 275
                 789********************9999******9999999999999999988888777776445567777777699999******************** PP

      HlyD_3  88 kvevslenpekksiplkpG 106
                 ++++ ++np   +++l+pG
  EHU01746.1 276 TLRAIFPNP---DKALLPG 291
                 *********...8999998 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     9e-10   3.2e-06       4      50 .]      68     114 ..      65     114 .. 0.96
   2 ?   -3.3   0.0       2.3   8.3e+03       9      18 ..     118     127 ..     115     128 .. 0.73
   3 ?   -0.6   0.9      0.33   1.2e+03      33      46 ..     139     152 ..     138     166 .. 0.65
   4 !   13.0   0.1   1.9e-05     0.068       3      29 ..     175     201 ..     164     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 9e-10
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      ++ ++vsG + + n  +G ++kaG  L+++D+  +q+  + a+a+la
       EHU01746.1  68 EVRPQVSGIILKRNFIEGSEIKAGESLYQIDPATYQASYDSAKADLA 114
                      689*****************************************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
  Biotin_lipoyl_2   9 vsGrVaqlnV 18 
                       ++r+aql V
       EHU01746.1 118 ANARIAQLTV 127
                      5688999887 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.33
  Biotin_lipoyl_2  33 lDsralqlalaqae 46 
                      + ++++++a+a a 
       EHU01746.1 139 ISQQDYDNAVATAA 152
                      77889999988733 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 1.9e-05
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdv 29 
                      +++++p+sGr+ +  V++G  V+ G++
       EHU01746.1 175 TKVSSPISGRIGKSSVTEGALVQSGQT 201
                      689**********************95 PP

>> DUF3324  Protein of unknown function C-terminal (DUF3324)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.5     0.047   1.7e+02      36      64 ..     139     167 ..     123     178 .. 0.85
   2 ?   10.2   0.0   0.00016      0.57      11      69 ..     242     301 ..     234     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.047
     DUF3324  36 pkqvngrnviqaklqNpqaailnklkvea 64 
                 ++q+++ n++    qN++a+   k++ve+
  EHU01746.1 139 ISQQDYDNAVATAAQNNAAVQAAKANVET 167
                 67999**************9999999986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00016
     DUF3324  11 ayvvgvvlrenek.kvkpkLklekvkpkqvngrnviqaklqNpqaailnklkveakvtkk 69 
                 + +v +++++ ++ +++  L++ +v+++q+ g  ++ a + Np +a+l  + v+a++ + 
  EHU01746.1 242 KANVTLLMQNGKNyAQPGTLEFSDVTVDQTTGSITLRAIFPNPDKALLPGMFVRARLDEG 301
                 67899*****99989999******************************999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3060.79
//
Query:       EHU01747.1  [L=1052]
Description: RND efflux system inner membrane transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1411.1  12.0          0 1410.9  12.0    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    7.8e-08   31.6  33.1    1.6e-06   27.3  11.9    2.6  3  MMPL       MMPL family
    8.4e-07   28.6  26.1    3.9e-05   23.1   4.3    2.4  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1410.9  12.0         0         0       1    1021 []       1    1029 [.       1    1029 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1410.9 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  ++kffi+rpifa+vla+i++l+G+lsi++lP++++P++app+++++++ypGa++++++++vtq++Eq++ng+dgl+y+sS+S s g++++t++F++g
  EHU01747.1    1 MAKFFIDRPIFAWVLAIIVMLAGALSIIKLPIEQYPNVAPPAIEIQANYPGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSdSSGALTLTISFQSG 97  
                  789********************************************************************************************** PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td diA++qvqn+lq a++ LP+evq++gi+++k+sss ++v+++ s+dgs+t+ +++d++++nikd++sr++GVgd q++G +++a+riw+dp kl
  EHU01747.1   98 TDADIAQVQVQNKLQLAMPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDGSMTQNDIADYVASNIKDPISRTPGVGDTQVFG-AQYAMRIWMDPSKL 193 
                  **********************************************************************************.************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  ++++lt+ dv++alk qn++vaaGql       gq+ +++i+aq++l+s++++++i++k n+dgs+vrlrDvA++elg e+++++a++ngkpa++++
  EHU01747.1  194 NNYQLTPVDVINALKTQNAQVAAGQLggtppvPGQQLNASIIAQTRLTSTKEFGNILLKvNNDGSQVRLRDVAQIELGGENYEIIARYNGKPASGIG 290 
                  ************************************************************************************************* PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  +k ++gana+++a+avk++l++L++++P+g+++v++yd+t+fv+ si eVvktL+eai+Lv+lv++lFLqn+ratlip+iavP++llgtfa++ a+g
  EHU01747.1  291 IKLATGANALNTAEAVKAELAKLQPTFPAGMKVVYPYDTTPFVKISIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIIGAFG 387 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  +s+N+lt+fg+vlAiGl+vDdAiVvvEn+er++ eeg++p+ea+++sm++iqgalv+ialvl+avf+P++f+gG++G ++rqf++tiv+a++lsvlv
  EHU01747.1  388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLV 484 
                  ************************************************************************************************* PP

                  HHCCHHHHHHHHS---STT-CT...SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB CS
    ACR_tran  478 altltPalcallLkerkeekek...kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgv 571 
                  al+ltPalca++Lk+ k+++++    ff +fnrlf++++++Y +++  ++r + ++ll++l++++++++lf+r+p++flPeed+g l++++qlp+g+
  EHU01747.1  485 ALILTPALCATMLKPVKKGDHGatkDFFGWFNRLFDKSTHHYVDSVGHIVRGTGRYLLLYLLIVLGMAFLFLRLPSSFLPEEDQGLLLAQAQLPAGA 581 
                  *********************99999*********************************************************************** PP

                  -HHHHHHHHHHHHH.HHH.TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSS CS
    ACR_tran  572 sleqtqkvlkqvek.ilk.ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletl 666 
                  ++e+tqkvl+qv++  l+ ek++v+svf+v+Gf ++g  +g+n++++f+sLkp++er++++ +v a+  r++++l++i++ +v++++++++ el+++
  EHU01747.1  582 TQERTQKVLDQVSDyFLTkEKDSVKSVFTVAGFGFAG--RGQNTGIAFVSLKPWDERTSSDMKVPAIQGRAMQALAQIKDGMVFAFNLPAIIELGNA 676 
                  **************5555799****************..********************************************************** PP

                  SCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTT.EEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEE CS
    ACR_tran  667 sgvrselqvklfgddleaLseaaeqllaalkelpe.lsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvv 762 
                  +g+++el + + + ++e+L++a++ql  +++++p+ l  vr+++ ed+pq++++id+eka++lGvs+sdin+tl + +ggsyvndfi++gr++kv+v
  EHU01747.1  677 TGFDFELID-QGNLGHEKLTQARNQLFGMIAQHPDtLVGVRPNGLEDTPQFKLDIDQEKAQALGVSLSDINTTLGASWGGSYVNDFIDRGRVKKVYV 772 
                  *********.************************988************************************************************ PP

                  EE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHH CS
    ACR_tran  763 rleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqe 859 
                  + ++d r+ p+d++k++vrn++g+mvp+sa+++ ++++g++++er+ng +s++i+g++a+g+s+++a++ +e++a+k  lp+g++++wtg+++qe++
  EHU01747.1  773 MGKADARMLPDDINKWYVRNSNGEMVPFSAFSSARWQYGSPRLERYNGLPSMEILGQAAPGKSSGDAMNLMEELASK--LPSGIGFDWTGMSYQERL 867 
                  *****************************************************************************..****************** PP

                  HHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHH CS
    ACR_tran  860 asnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeail 956 
                  ++n++++l+a++l++vfl+Laalyes+s+p++++l+vPl++vGal+ ++lrgl+++v++ vGl+++iGl++kNail+vefak+l+ekegk l ea+l
  EHU01747.1  868 SGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGLVEATL 964 
                  ************************************************************************************************* PP

                  HHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  957 eaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  ea+++RLrPiLMT+la+ilGvlPLa+stgaGs++q+++g++v+gG+vt+t+L++++vPv++v+v+
  EHU01747.1  965 EACRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATALAIFFVPVFFVVVR 1029
                  **************************************************************985 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.39   2.3e+03      31      87 ..     104     149 ..      62     155 .. 0.53
   2 !   27.3  11.9   2.7e-10   1.6e-06     102     302 ..     298     496 ..     289     523 .. 0.82
   3 !   14.1   8.3   2.8e-06     0.017     144     305 ..     871    1031 ..     850    1044 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.39
        MMPL  31 vvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdflsdpdvaaafvSkDgka 87 
                 +v + +++ +l +    + v+++  ++kk ++             + a+f+S+Dg+ 
  EHU01747.1 104 QVQV-QNKLQLAMPLLPQEVQQQGIQVKKSSSS----------FLMVAGFISDDGSM 149
                 3333.3333333323333333333333222222..........24666667777765 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 2.7e-10
        MMPL 102 eadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglels 200
                  a ++++a++a +++++p+ ++  +v+  +  ++++ ++s  ++ ++ + +++++++++ + ++++ a l+p + v v ll ++++      + +++ s
  EHU01747.1 298 NALNTAEAVKAELAKLQPTFPAGMKVVY-PYDTTPFVKISIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAI------IGAFGYS 389
                 5667788888888888888888888876.556678888899999999999********************************9999......4455555 PP

        MMPL 201 tfvl.gllvvlliavGtDYallLvsRy.reelaagedreeaviravastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTl 294
                   +l ++ +vl+i+  +D a+ +v    r  +++g   +ea  r + ++ ++ ++ +l++ + ++ +++   ++  + +q+ ++i  +++++vl++l l
  EHU01747.1 390 INTLtMFGMVLAIGLLVDDAIVVVENVeRVMVEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIPMAFfggSTGVIYRQFSITIVSAMALSVLVALIL 488
                 4444056999**************9984667899*************************99999999993334556789******************** PP

        MMPL 295 lPAllvll 302
                 +PAl++++
  EHU01747.1 489 TPALCATM 496
                 *****985 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.8e-06
        MMPL  144 dlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreel.aagedreea 239 
                  ++  + +++l+v+++ L+ +y S  +++ ++l+v ++++ al    ++ l    +   fv+gll+ +++++    a+l+v   ++ + ++g+   ea
  EHU01747.1  871 QAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALI---FTTLRGLSNDVYFVVGLLTTIGLSA--KNAILIVEFAKDLMeKEGKGLVEA 962 
                  56667899**************************999987664...4777777888899****99887765..67999999999876246777788* PP

        MMPL  240 viravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305 
                    +a +   + +++  l +++ +l L++++    ++ ++vG+ +  G++ ++++++ ++P + v++ r+
  EHU01747.1  963 TLEACRMRLRPILMTSLAFILGVLPLAISTgagSGAQNAVGTGVMGGMVTATALAIFFVPVFFVVVRRR 1031
                  **************************9964322788889***********************9999887 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9  13.9   3.7e-05      0.22      35     186 ..     342     496 ..     333     499 .. 0.76
   2 !   23.1   4.3   6.6e-09   3.9e-05      35     181 ..     874    1023 ..     853    1031 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH..HHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHH CS
   SecD_SecF  35 lallialvliliyvalrFewrvalaaiialvhDvii..tvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqt 131
                   l+ a++l+++ v+  F +++    i +++  v++  t +++ ++g  ++  t+ ++   iG  v+d +vv + v+  + + +  + ke++++s++q 
  EHU01747.1 342 KTLMEAILLVFL-VMYLFLQNFRATLIPTIAVPVVLlgTFAIIGAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVE-EGLPPKEATKRSMEQI 438
                 445555555444.4455666666666666666555423677778889*****************************877655.899***********99 PP

                 HHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 132 Ltrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasplllll 186
                     +   l++  v + + ++gg    + ++f+++++ ++++ ++ ++ +  +l +++
  EHU01747.1 439 QGALVGIALVLSAVFIPMAFFGGstgVIYRQFSITIVSAMALSVLVALILTPALCATM 496
                 8866666666677778899999977456799******999999999888888887766 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 6.6e-09
                  HHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHH CS
   SecD_SecF   35 lallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnq 130 
                     +i+l+++++ +a  +e w++++++++ +   v+ ++ +  l g+  d+ +v++lLt iG S ++ +++ +  ++ ++k + + l e++ ++  +
  EHU01747.1  874 ALYAISLIVVFLCLAALYEsWSIPFSVMLVVPLGVVGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEK-EGKGLVEATLEACRM 969 
                  44467888999999999976999**99999******************************************988887776.77788899999**** PP

                  HHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHH CS
   SecD_SecF  131 tLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasp 181 
                   L   ++tsl  +l v+ l + +g   ++ + + + ++ G+++ t  +if+   
  EHU01747.1  970 RLRPILMTSLAFILGVLPLAISTGagsGAQNAVGTGVMGGMVTATALAIFFVPV 1023
                  *********************988665677777888888888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.49
# Mc/sec: 6409.03
//
Query:       EHU01748.1  [L=84]
Description: putative ribosomal protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-21   75.5   0.3    3.4e-21   75.2   0.3    1.1  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.3   1.9e-25   3.4e-21       1      67 []       1      78 [.       1      78 [. 0.98

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.9e-25
  Ribosomal_L31  1 mKkgiHPeyrevvvkca.cgeefltrStl..........kekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67
                   mK++iHP yr vv++++ ++  f+++St+          ++ p +++dv+s+sH fYtGkqk ++++G  ++F++r+g
     EHU01748.1  1 MKANIHPPYRAVVFHDTsADVFFKIGSTIktdrtvefegETLPYVTLDVSSASHVFYTGKQKDFTKEGSTARFNQRFG 78
                   9****************99999****************999************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 716.09
//
Query:       EHU01749.1  [L=46]
Description: L36 family ribosomal protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-16   58.0   7.1      1e-15   57.6   7.1    1.2  1  Ribosomal_L36  Ribosomal protein L36


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   7.1   5.8e-20     1e-15       1      38 []       1      41 [.       1      41 [. 0.96

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 5.8e-20
  Ribosomal_L36  1 MKVrssvkkmc...egCkvvrRkgrvyviCkknPrhKqRQG 38
                   M V ss++  +   ++CkvvrRkgr+yviCk+nPr+K+ QG
     EHU01749.1  1 MQVLSSLRCAKrrhRDCKVVRRKGRIYVICKTNPRFKAVQG 41
                   9999***9888889**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 383.56
//
Query:       EHU01750.1  [L=292]
Description: periplasmic component of an ABC superfamily metal ion transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-78  262.4   0.0    4.3e-78  262.3   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.0   2.4e-82   4.3e-78       2     253 ..      27     287 ..      26     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 2.4e-82
                 EESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCEEEEETTTTCCSEBCSS......EST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxx RF
        ZnuA   2 vattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrvevidlsegveeeeeee......DpH 94 
                 va++++l+d+v+q++Gd+v v++Lv p++dpH++eptp+d ++la+Ad++++ gl+lE w+++l+++s+ + +  v+ +s+g+e+++ ee      DpH
  EHU01750.1  27 VASFTVLADIVKQIGGDHVHVKSLVGPNGDPHTFEPTPQDSEALAKADVVFVSGLGLEGWMNRLVTASGYKGE-PVV-ASTGIETRTMEEdgktitDPH 123
                 8****************************************************************99986666.788.555886666666788889*** PP

                 GGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS....HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx RF
        ZnuA  95 iWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagiagiste....aaqiaa 189
                  W s++n   +++n+ +aL++adp++a++++++ ++yi++L++lda+ ++ +a+ip++krk++t+hdafgy+ ++yg+++++ +g+ste    a+++a+
  EHU01750.1 124 AWNSMYNSTIYAKNVMNALIKADPQDAEDIRQRGEKYIQQLQKLDAWAKTSFAAIPQQKRKVLTSHDAFGYFGQRYGVTFLAPVGFSTEaeasASDVAS 222
                 *************************************************************************************************** PP

                 HHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EE.EEE-STSSSTSTTS.TTSHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        ZnuA 190 lieeikeagvkaifveplaspklaetlaeeagvkv.atlysldslgdegs.aetYidmmranlesl 253
                 li+++k++++k+ f+e++++p+l++++a+++g+k  ++ly+ ++l++++  a+tY   +++n++++
  EHU01750.1 223 LITQLKQEHIKTYFMENQTDPRLVKQIASATGAKPgGELYP-EALSTASGpAPTYEAAFKHNVDVM 287
                 ********************************997477***.******988************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2489.57
//
Query:       EHU01751.1  [L=279]
Description: permease component of an ABC superfamily zinc transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-49  166.9  30.2    6.6e-49  166.7  30.2    1.0  1  ABC-3     ABC 3 transport family
  ------ inclusion threshold ------
        0.1   13.1   0.0       0.29   11.6   0.0    1.7  1  P19Arf_N  Cyclin-dependent kinase inhibitor 2a p19Arf N-termi


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7  30.2   7.3e-53   6.6e-49       2     256 ..      10     268 ..       9     270 .. 0.95

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 7.3e-53
       ABC-3   2 yeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvn....lllgailvgliaavalellkrktklkedtaigivlsvflal 96 
                 + f++ral+a i+++  + +lg+f+ lrr+sl+gdalsHa+lpG a++yl++      + +g +++gl++a+  ++++r t lked++ +     +lal
  EHU01751.1  10 FSFMRRALVACIALAFSATPLGVFLSLRRMSLIGDALSHAVLPGAAIGYLISGLslvaMGVGGLIAGLAVALLSGAVSRYTPLKEDASFAGFYLGSLAL 108
                 689************************************************988554455666788888888889999********************* PP

       ABC-3  97 glvlvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveg.lsvkllkllllalialavvvalqavGviLvia 194
                 g+ lvsl   s+vdl + LfG++l++++  li++  i+a++ll+l +++++l++  fd ++ +++g  s  l++ ++l+l++l  v+  q+ G ++ + 
  EHU01751.1 109 GVTLVSLRG-SSVDLLHVLFGSLLAVDNPALIVVGSIAAFTLLMLAVIYRPLVIDAFDADFLRAQGkWSAPLVHGIFLTLVVLNLVAGFQVLGTLMSVG 206
                 ******998.*******************************************************9568899*************************** PP

       ABC-3 195 lliiPaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllall 256
                 l+++Paa Ar ++r+l  +l  A+l++++s+++Gl+lS +++l++G+ +vl a++lf+l++l
  EHU01751.1 207 LMMLPAASARFWSRHLVLMLGAAMLMAVLSAFTGLVLSWHFSLPAGPAVVLSAAMLFFLSIL 268
                 ***********************************************************987 PP

>> P19Arf_N  Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05      0.29      13      43 ..     157     186 ..     156     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                 -STTHHHHHHHHHHT-------XXXXXXXXX CS
    P19Arf_N  13 rPprvRvFvvkivrparewaasgvraavalV 43 
                 rP+ + +F + ++r++++w+a+ v +  +l 
  EHU01751.1 157 RPLVIDAFDADFLRAQGKWSAPLVHGI-FLT 186
                 677778999****************93.332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2273.26
//
Query:       EHU01752.1  [L=222]
Description: ABC transport system ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-25   90.5   0.0      2e-25   89.9   0.0    1.3  1  ABC_tran      ABC transporter
    7.6e-10   39.1   2.2    6.9e-06   26.1   0.7    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.2e-08   34.7   0.8     0.0019   17.7   0.0    2.4  2  SMC_N         RecF/RecN/SMC N terminal domain
    5.6e-06   26.0   0.3    1.1e-05   25.0   0.3    1.5  1  AAA_29        P-loop containing region of AAA domain
    0.00038   20.9   1.0     0.0011   19.3   1.0    1.7  1  AAA_16        AAA ATPase domain
     0.0015   18.8   0.1     0.0047   17.2   0.1    1.9  1  AAA_22        AAA domain
     0.0027   17.9   0.0      0.021   15.1   0.0    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0029   17.0   0.1     0.0066   15.8   0.1    1.5  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0038   17.8   0.0      0.006   17.1   0.0    1.3  1  AAA_23        AAA domain
      0.004   16.9   0.1     0.0054   16.5   0.1    1.1  1  AAA_15        AAA ATPase domain
     0.0056   16.6   0.1     0.0097   15.8   0.1    1.4  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.022   14.9   0.0      0.034   14.3   0.0    1.5  1  AAA_33        AAA domain
      0.028   14.3   0.5       0.12   12.3   0.1    1.9  2  NACHT         NACHT domain
      0.078   13.0   0.1       0.66   10.0   0.0    2.1  2  AAA_5         AAA domain (dynein-related subfamily)
        0.1   12.7   0.0       0.25   11.5   0.0    1.6  2  MMR_HSR1      50S ribosome-binding GTPase
       0.13   11.9   1.9        0.3   10.8   0.5    1.9  2  AAA_30        AAA domain
       0.14   11.7   0.3       0.36   10.4   0.2    1.7  2  AAA_25        AAA domain
       0.16   12.2   0.1       0.33   11.2   0.1    1.6  1  AAA_28        AAA domain
       0.16   11.8   0.2        0.3   10.9   0.2    1.4  1  MukB          MukB N-terminal


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   2.2e-28     2e-25       4     137 .]      20     158 ..      18     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 2.2e-28
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TT..SBHHHH.................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx.................xxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpe..ltvren.................esde 83 
                 v+ +l +g+++a++G nG+GKStL+k++agll p +G+           + +++r+e+g+lpq ++l  +  ltv e                  + ++
  EHU01752.1  20 VTTELAQGSMTALIGANGSGKSTLIKTIAGLLPPVSGQC----------DVRISRREVGWLPQRSELETRfpLTVFELvsigcwprcgwfgginrALRN 108
                 67899*********************************9..........7899***********88877722357777**************9999999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ei++al+ +++ + +d       ++LSgGq qrv  ar++l++++l+llDEp++
  EHU01752.1 109 EINAALDAVQMRDYADAQP----ATLSGGQLQRVLFARLMLQRSRLWLLDEPFN 158
                 9*********999776666....*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.7   7.3e-09   6.9e-06       1      23 [.      29      51 ..      29      87 .. 0.85
   2 !   12.8   0.0   8.3e-05     0.079     224     297 ..     117     187 ..      99     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 7.3e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                +++liG+NgsGKS+L++++ +l 
  EHU01752.1 29 MTALIGANGSGKSTLIKTIAGLL 51
                699****************9995 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.3e-05
      AAA_21 224 lengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 + + d+ + +++ lS G+++   ++ ++l++    +l l+DEp ng++ k ++ l+ +l + ++ g+ ++++ H
  EHU01752.1 117 VQMRDYADAQPATLSGGQLQRVLFARLMLQRS---RLWLLDEPFNGIDSKTVALLMSILQQQQQAGTTLLVVLH 187
                 55677778888899999999955555555555...9***********************999998998888655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     2e-06    0.0019      23      45 ..      26      48 ..      17      57 .. 0.86
   2 !   14.9   0.1   1.4e-05     0.013     134     203 ..     127     193 ..     103     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2e-06
                TSSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAil 45
                + s+ta++G+NGSGKs l+  i 
  EHU01752.1 26 QGSMTALIGANGSGKSTLIKTIA 48
                6689***************9985 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemle 203
                 + +LSgG+ +     +lfA  + +++ l+llDe    +D k v+ + ++l+++++  + ++v+ +++ ++e
  EHU01752.1 127 PATLSGGQLQ----RVLFARLMLQRSRLWLLDEPFNGIDSKTVALLMSILQQQQQAgTTLLVVLHDRPLVE 193
                 5589999986....789**********************************98877588888888887776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   1.2e-08   1.1e-05      18      48 ..      23      53 ..      16      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.2e-08
      AAA_29 18 eidlkg.atlltGpsGsGKSTllDAiqalLvp 48
                e+  +g +t l+G++GsGKSTl+  i+ lL p
  EHU01752.1 23 ELA-QGsMTALIGANGSGKSTLIKTIAGLLPP 53
                555.4559***************999999877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.0   1.2e-06    0.0011      23     169 ..      26     184 ..      14     185 .. 0.54

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.2e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdql..esa..........................ipysalaqalareellrqlldeaesae 93 
                 +++++ l+G+ G+GKs+l+++++  l       ++g+cd    +++                           p+  +   + ++ l +++++++++ +
  EHU01752.1  26 QGSMTALIGANGSGKSTLIKTIA-GLLPP----VSGQCDVRisRREvgwlpqrseletrfpltvfelvsigcWPRCGWFGGI-NRALRNEINAALDAVQ 118
                 348999*****************.68888....9999999943222344444444444433333333222222223344444.2244444433333333 PP

      AAA_16  94 leawrekleealaavpelagaeasrllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlrlles.k.pllv 169
                  ++++++ +++l+               +l+r l a+l  +++ l l+ + +  +d+ + +ll ++l+ +++ +  llv
  EHU01752.1 119 MRDYADAQPATLS-------------GGQLQRVLfARLMLQRSRLWLLDEPFNGIDSKTVALLMSILQQQQQaGtTLLV 184
                 3333333333333.............33444444444444233266666678999999999977666666665556666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     5e-06    0.0047       4      99 ..      26     155 ..      23     219 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.......................erpevvfvtlpsst.sskdllrellralglelka......er 72 
                 + ++++++G  G+GK+tl+++++  l+ ++ + +                          e+v++ +   +     + r+l ++++  l+a      + 
  EHU01752.1  26 QGSMTALIGANGSGKSTLIKTIAGLLPPVSGQCDvrisrrevgwlpqrseletrfplTVFELVSIGCWPRCgWFGGINRALRNEINAALDAvqmrdyAD 124
                 57899*****************99998777666677777777777777776666555555555666666663223344444444444444455556633 PP

      AAA_22  73 lsseell.ealeqalrarav...ielliiDE 99 
                 ++   l   +l++ l ar +    +l ++DE
  EHU01752.1 125 AQPATLSgGQLQRVLFARLMlqrSRLWLLDE 155
                 3333333344444443333333344666666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-05     0.021      63      89 ..     147     173 ..     106     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-05
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 + rl +LDE F+++D++++a l+++l+
  EHU01752.1 147 RSRLWLLDEPFNGIDSKTVALLMSILQ 173
                 56999******************9997 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     7e-06    0.0066      26      53 ..      31      58 ..      20      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7e-06
  Mg_chelatase 26 llvGppGsGKtmlakrlpsllpplseee 53
                   l+G+ GsGK+ l+k +++llpp+s + 
    EHU01752.1 31 ALIGANGSGKSTLIKTIAGLLPPVSGQC 58
                  589********************99775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.4e-06     0.006      21      40 ..      29      48 ..      19      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.4e-06
      AAA_23 21 ltlItGpNGaGKTTildAik 40
                +t+++G NG+GK+T++  i 
  EHU01752.1 29 MTALIGANGSGKSTLIKTIA 48
                89**************9886 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.7e-06    0.0054      25      43 ..      29      47 ..      20      53 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.7e-06
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +t liG+N+sGKS++++ +
  EHU01752.1 29 MTALIGANGSGKSTLIKTI 47
                89**************988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     1e-05    0.0097      94     121 ..      21      49 ..       6      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
                  HHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  94 kellkd.ktsvlvGqSGvGKStLinallp 121
                  +++l++ ++++l+G  G GKStLi+++++
   EHU01752.1  21 TTELAQgSMTALIGANGSGKSTLIKTIAG 49 
                  45555559*****************9976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.6e-05     0.034       3      33 ..      31     106 ..      29     195 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.6e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg......avllssdt.......................................l 33 
                  l+G++GsGKstl++ ++  l+       v++s  +                                       l
  EHU01752.1  31 ALIGANGSGKSTLIKTIAGLLPpvsgqcDVRISRREvgwlpqrseletrfpltvfelvsigcwprcgwfgginraL 106
                 689*************998888666666666666556666666666666666666666666666666666644441 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00012      0.12       3      23 ..      30      50 ..      28      59 .. 0.88
   2 ?    0.1   0.0       0.7   6.6e+02      73     130 ..     140     189 ..     106     214 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                 +l G++GsGK+tL++ +a +
  EHU01752.1 30 TALIGANGSGKSTLIKTIAGL 50
                6899*************9865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.7
                 HHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECC CS
       NACHT  73 wavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpr 130
                 +a l+ ++ rl+l+   ++ + ++           lL ++++++   +++ll+ ++ r
  EHU01752.1 140 FARLMLQRSRLWLLDEPFNGIDSKTV--------ALLMSILQQQQQAGTTLLVVLHDR 189
                 55566666666665333444444333........366666666666666666666655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0007      0.66       4      23 ..      32      51 ..      30      64 .. 0.87
   2 ?    0.4   0.0      0.61   5.8e+02      65      93 ..     147     176 ..     117     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0007
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                L+G+ G+gKs+l++ +a +l
  EHU01752.1 32 LIGANGSGKSTLIKTIAGLL 51
                9***************9998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.61
                 G-SEEEEES.GGG--HHHHHHHHHHHHSSE CS
       AAA_5  65 egeilvlDE.veraesevlnsLlslleerr 93 
                 ++++ +lDE ++ ++s++++ L+s+l +++
  EHU01752.1 147 RSRLWLLDEpFNGIDSKTVALLMSILQQQQ 176
                 666777777455566888888888887655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00026      0.25       3      21 ..      31      49 ..      29      73 .. 0.84
   2 ?   -2.6   0.0       5.9   5.6e+03      25      35 ..     173     183 ..     148     198 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                a++G   +GKStLi+++ g
  EHU01752.1 31 ALIGANGSGKSTLIKTIAG 49
                89**************987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.9
                 EESSSTTSSSS CS
    MMR_HSR1  25 ivsdkpgtTrd 35 
                 + ++++gtT+ 
  EHU01752.1 173 QQQQQAGTTLL 183
                 33444455543 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00032       0.3      15      41 ..      25      50 ..       9      57 .. 0.78
   2 ?    0.0   0.0      0.62   5.9e+02      82     115 ..     141     175 ..     105     186 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
      AAA_30 15 tsgdrvavltGpAGtGKttalkalrea 41
                ++g  +++l G+ G+GK+t++k+++ +
  EHU01752.1 25 AQG-SMTALIGANGSGKSTLIKTIAGL 50
                333.499***************99865 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.62
      AAA_30  82 grarlepgtllivDE.agmvdtkqlaallkaaeka 115
                 +r  l++++l++ DE    +d+k++a l+++++++
  EHU01752.1 141 ARLMLQRSRLWLLDEpFNGIDSKTVALLMSILQQQ 175
                 44566677777777743456666666666666553 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00038      0.36      30      50 ..      24      44 ..       8      49 .. 0.86
   2 ?   -2.3   0.0         3   2.8e+03     176     188 ..     175     187 ..     143     204 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
      AAA_25 30 lpagelallaGapgtGKttla 50
                l+ g+ ++l+Ga g+GK+tl 
  EHU01752.1 24 LAQGSMTALIGANGSGKSTLI 44
                6789***************96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
      AAA_25 176 arrtgaavllvhH 188
                 +++ g ++l+v H
  EHU01752.1 175 QQQAGTTLLVVLH 187
                 3444555555544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00035      0.33       3      20 ..      31      48 ..      29      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
      AAA_28  3 vitGgestGKTtlleaLa 20
                +++G+ ++GK+tl++ +a
  EHU01752.1 31 ALIGANGSGKSTLIKTIA 48
                79************9987 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00032       0.3      27      54 ..      28      54 ..      20      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
                HHHHHHS--SHHHHHHHHHHHHHHS--T CS
        MukB 27 lvttlsGgnGaGksttmaafvtaliPdl 54
                 +t+l G+nG+Gkst +   ++ l+P +
  EHU01752.1 28 SMTALIGANGSGKSTLI-KTIAGLLPPV 54
                579***********965.5677787755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1744.78
//
Query:       EHU01753.1  [L=34]
Description: hypothetical protein CKS_0195 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       852  (0.0475208); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 267.81
//
Query:       EHU01754.1  [L=113]
Description: hypothetical protein CKS_5725 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 920.80
//
Query:       EHU01755.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01755.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01755.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01755.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01755.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01755.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHU01755.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01755.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01755.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHU01755.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01755.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01755.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHU01755.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01755.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01755.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01755.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHU01755.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01755.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2652.15
//
Query:       EHU01756.1  [L=125]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-58  196.1   2.0    2.2e-58  195.9   2.0    1.0  1  YbaJ      Biofilm formation regulator YbaJ
  ------ inclusion threshold ------
       0.02   14.8   0.1      0.046   13.7   0.1    1.6  1  DUF3926   Protein of unknown function (DUF3926)


Domain annotation for each model (and alignments):
>> YbaJ  Biofilm formation regulator YbaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.9   2.0   2.4e-62   2.2e-58       1     116 [.       1     116 [.       1     118 [. 0.99

  Alignments for each domain:
  == domain 1  score: 195.9 bits;  conditional E-value: 2.4e-62
        YbaJ   1 mdeyspkrydiaelkylceklydeslavlgesehgwvndptsavnlqlneliehiaafvlnfkikykeesdlseqideylddtyalfssygineadlrk 99 
                 mdeyspkr+dia+lky+ce+l+d s+a+l +s+hgwvndpt++ nlqln+liehia+f++n+kik+ e++ l++qideylddt++lfssy++n++dl++
  EHU01756.1   1 MDEYSPKRHDIAQLKYVCESLFDASMATLTDSHHGWVNDPTADGNLQLNDLIEHIASFTMNYKIKHAEDEALITQIDEYLDDTFMLFSSYSVNTQDLQR 99 
                 9************************************************************************************************** PP

        YbaJ 100 wqkskkrlfnilaeekk 116
                 wq+s+krlfn++ ee++
  EHU01756.1 100 WQRSAKRLFNLFQEECA 116
                 *************9975 PP

>> DUF3926  Protein of unknown function (DUF3926)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.1e-06     0.046      12      36 ..     101     124 ..      99     125 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-06
     DUF3926  12 QQSAkkvLNILQEELSSymqEttHs 36 
                 Q SAk++ N+ QEE   y q  +Hs
  EHU01756.1 101 QRSAKRLFNLFQEEC-AYLQQPSHS 124
                 99************6.688888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 917.78
//
Query:       EHU01757.1  [L=71]
Description: hemolysin expression modulating protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-33  114.3   0.5    2.7e-33  114.1   0.5    1.1  1  HHA       Haemolysin expression modulating protein


Domain annotation for each model (and alignments):
>> HHA  Haemolysin expression modulating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.5   1.5e-37   2.7e-33       1      57 []      12      68 ..      12      68 .. 0.99

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 1.5e-37
                HHHHT---HHHHHHHHHHHHHHS-HHHHHHHHHHHTHHHHHHHTTS---S--THHHH CS
         HHA  1 lrlRrcssidtlEkvieklkyeltddEllefysAaDHRrAELvsgkLyDkvPksvWk 57
                +rlRrc+sidtlE+viek+kyel+ddEl+ fysAaDHR+AEL+++kLyDkvP svWk
  EHU01757.1 12 MRLRRCRSIDTLERVIEKNKYELSDDELAVFYSAADHRLAELTMNKLYDKVPVSVWK 68
                9*******************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 585.47
//
Query:       EHU01758.1  [L=70]
Description: methylated-DNA-[protein]-cysteine methyltransferase-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-23   80.7   0.0    6.9e-23   80.6   0.0    1.0  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.9e-27   6.9e-23       2      63 ..       8      69 ..       7      70 .] 0.98

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.9e-27
                   HHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCC CS
  DNA_binding_1  2 fqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklg 63
                   f+qr+w+++ +Ip+GkvttYg++A l+g+p+aar+Vg++l ++p    +P+HRV+++ g+l+
     EHU01758.1  8 FKQRIWQIVAAIPPGKVTTYGDVALLAGSPRAARQVGGVLSRLPEGSTLPWHRVINRHGTLS 69
                   99*********************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 524.16
//
Query:       EHU01759.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01759.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01759.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01759.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01759.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01759.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01759.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01759.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01759.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01759.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01759.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01759.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01759.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01759.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01759.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01759.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01759.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01759.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2440.52
//
Query:       EHU01760.1  [L=185]
Description: putative outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-38  130.7   0.2    3.3e-38  130.3   0.2    1.2  1  YscW      Type III secretion system lipoprotein chaperone (Ys


Domain annotation for each model (and alignments):
>> YscW  Type III secretion system lipoprotein chaperone (YscW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.2   1.9e-42   3.3e-38       2     107 .]      43     147 ..      42     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 1.9e-42
                 -EEEEEEEEE...SS--TT-EEEEEEEEEE..ETTEEEEEEEEEEEESS..SSEEEEEEEEHHHHTT--EE.EEEEEEETT--S--EEEEEEE...-TT CS
        YscW   2 aaqtvsGtVtyrerialppdavltVeLsdvSladapakvlaeqeirtegkqvPlsFsLsydparikpraryavsArievdgkllfitdtvypvitrgag 100
                 a+++vsG V++r+rialppda ltV+Lsd+S adap+kvla++ +rt+gkq+P+ F L+++pa+++p+ar+ +sA+i+v+gkl+f+t++v+pv+++g g
  EHU01760.1  43 AQPNVSGAVYIRQRIALPPDAALTVTLSDASVADAPSKVLAQRVVRTDGKQAPFHFILPFNPADVQPNARILLSAAITVNGKLAFVTEEVKPVVNQG-G 140
                 5899*********************************************************************************************.9 PP

                 SEEEEE- CS
        YscW 101 nkadlqL 107
                 +kadl L
  EHU01760.1 141 TKADLVL 147
                 9*99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1466.02
//
Query:       EHU01761.1  [L=287]
Description: acyl-CoA thioesterase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-64  214.0   0.1    4.8e-47  159.1   0.0    3.1  2  Acyl_CoA_thio  Acyl-CoA thioesterase
    1.6e-58  198.9   0.1      2e-58  198.6   0.1    1.0  1  4HBT_3         Thioesterase-like superfamily
    0.00022   21.5   0.0    0.00057   20.2   0.0    1.7  2  4HBT           Thioesterase superfamily


Domain annotation for each model (and alignments):
>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.3e-16     8e-13       6     126 ..      22     103 ..      17     115 .. 0.90
   2 !  159.1   0.0   8.1e-51   4.8e-47       3     132 .]     149     281 ..     147     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.3e-16
                    CEC-.SEEEECSSSSBTTCHHHHHEECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGTTTSTTEEEEEEEEEEE-S--BTTS-EEEEEEE CS
  Acyl_CoA_thio   6 feleypvevrpkelkrefgGqvvaekqsllrakktvPddallhsvllaYlSDltllltalttHelledslqvsldHsvyFlrpgdlnewilydves 101
                    f+++   +++++ l+++fgGqvv   q+l++ak+tvP+d+ +hs+                              Hs yFlrpgd+++ i+ydves
     EHU01761.1  22 FRGQ---SEDLG-LRQVFGGQVVG--QALFAAKQTVPEDRGVHSF------------------------------HS-YFLRPGDSQKAIIYDVES 80 
                    5555...67888.99*********..*******************..............................**.****************** PP

                    EEEETTEEEEEECCEE......ECTTEEEEE CS
  Acyl_CoA_thio 102 psasggrgLrqGriFs......tqdgklias 126
                            Lr+G++Fs      +q+g+ i++
     EHU01761.1  81 --------LRDGKSFSarrvsaIQNGQPIFY 103
                    ........*********************98 PP

  == domain 2  score: 159.1 bits;  conditional E-value: 8.1e-51
                    CTCCEC-.SEEEECSSSSBTTCHHHHH.EECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGT..TTSTTEEE.EEEEEEEE-S--BTTS- CS
  Acyl_CoA_thio   3 kelfeleypvevrpkelkrefgGqvva.ekqsllrakktvPddallhsvllaYlSDltllltalttHe..lledslqv.sldHsvyFlrpgdlnew 94 
                    +e+f++e+p+e+rp ++++++ G+v + ++q+++ra++t+Pdd ++h++ll+Y+SDl++l++al++H+  +le  +qv ++dHs++F+rp ++n+w
     EHU01761.1 149 REKFVAERPLEIRPVQIHNPLRGHVDKpQRQVWIRANGTLPDDVRIHQYLLGYASDLNFLPVALQPHGkgFLEADMQVaTIDHSMWFHRPLNFNDW 244
                    789***********************9********************************************************************* PP

                    EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio  95 ilydvespsasggrgLrqGriFstqdgkliasvqqeGl 132
                    +ly+ves+sasg+rg+++G+++  q+g+l+as++qeG+
     EHU01761.1 245 LLYSVESTSASGARGFVRGEFY-NQQGELVASTVQEGV 281
                    **********************.*************96 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.6   0.1   3.3e-62     2e-58      10     248 .]      33     282 ..      27     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 198.6 bits;  conditional E-value: 3.3e-62
                 C.-HHHHHHHHHHHHHHT.-S..SSEEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEEEEEEEE---T.....---EE-------. CS
      4HBT_3  10 agyGGyvlAlalraaqrtvpdp.rlhslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpiftatasfgraestgwe.lepaaapppvppp 105
                 +++GG+v+++al aa++tvp+  ++hs+h yFlrpgd++  +iy ve +rdG+sfs r+v+++q+g+pif +tasf+ +es g+e ++p   +p+v++p
  EHU01761.1  33 QVFGGQVVGQALFAAKQTVPEDrGVHSFHSYFLRPGDSQkAIIYDVESLRDGKSFSARRVSAIQNGQPIFYMTASFQSPES-GFEhQKP---MPQVKGP 127
                 57*****************885355*******************************************************8.8774444...8***999 PP

                 GGGE---.......--SSGGGSGG....TEE.EE-HHT---S........S-EEEEEEEET...TTS-SSHHHHHHHHTT-....-GGGGTSS-..... CS
      4HBT_3 106 deaalaad......eaplplfrrvpg..fle.pfeprpaeggkpd.spagpkrvrqWvrlr...eggepahlaaLaylsDs.f..pvprvhglrldaea 188
                 ++ a +++      +    l +++ +   +e p+e+rp++ ++p   + ++++ ++W+r++   +++ + h+  L+y+sD  f  +++  hg  + + +
  EHU01761.1 128 ENLANEQQmaqkmaH---MLPEKLREkfVAErPLEIRPVQIHNPLrGHVDKPQRQVWIRANgtlPDDVRIHQYLLGYASDLnFlpVALQPHGKGFLEAD 223
                 777554434454432...22223322223345999999999988766777889999****988777779***9*********97544555555554444 PP

                 .SB--EEEEEEEE-S--S-...EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEEET CS
      4HBT_3 189 sgwmpsldltiyfhrepaedeWllleaetpwagdgrglvearlwdedGrlvAtstQeglv 248
                  + ++++d++++fhr ++ ++Wll+ +e+++a++ rg+v++++++++G+lvA+++Qeg++
  EHU01761.1 224 -MQVATIDHSMWFHRPLNFNDWLLYSVESTSASGARGFVRGEFYNQQGELVASTVQEGVM 282
                 .7899**********655479*************************************97 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.3   1.4e+04      33      44 ..      57      68 ..      43      76 .. 0.73
   2 !   20.2   0.0   9.5e-08   0.00057      27      79 .]     218     274 ..     209     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
                EEEEEEEESS-B CS
        4HBT 33 vvelsidflrpv 44
                v +++  flrp+
  EHU01761.1 57 VHSFHSYFLRPG 68
                666777788887 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 9.5e-08
                 T....TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEEE CS
        4HBT  27 r....gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlva 79 
                 +    +  v++++ s+ f+rp  + d+l+  ++ + +++++ +v+ e+++++g+lva
  EHU01761.1 218 GfleaDMQVATIDHSMWFHRPLNFNDWLLYSVESTSASGARGFVRGEFYNQQGELVA 274
                 345557899********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2066.46
//
Query:       EHU01762.1  [L=428]
Description: ammonium transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-126  421.4  41.0   3.3e-126  421.2  41.0    1.0  1  Ammonium_transp  Ammonium Transporter Family
  ------ inclusion threshold ------
        2.7    7.7   6.4        1.8    8.3   0.1    3.8  2  DUF3188          Protein of unknown function (DUF3188)


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.2  41.0  3.7e-130  3.3e-126       1     399 []      33     426 ..      33     426 .. 0.97

  Alignments for each domain:
  == domain 1  score: 421.2 bits;  conditional E-value: 3.7e-130
                      HHHHHHHHHHHHH.HHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-......TTTTSCCGCCTTCCHHHH CS
  Ammonium_transp   1 aflllsaalvifm.qagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign......lglsaagvqdetlldglf 87 
                      af+++++alv+fm  +g+al+++gl+rsknvl++l+++ + + +v++l+v++Gyslaf++    ++f+g+       +  a ++ ++t++++++
       EHU01762.1  33 AFMMICTALVLFMsIPGIALFYGGLIRSKNVLSMLTQVAVTFSLVCVLWVVYGYSLAFSEG---NAFFGSfnwamlKN-IALTAVMGTFYQYIH 122
                      69*********************************************************85...77777766677444.4677778899***** PP

                      HHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTT CS
  Ammonium_transp  88 flfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegk 181
                      ++fq++fa++++++v ga+aeri+fsa+l+f  +++tl y p+ah+vw+ gg+la+ g+l DfAg+tvVH++++vagL++a+++gkr g +   
       EHU01762.1 123 VAFQASFACITVGLVVGALAERIRFSAVLIFVGVWLTLAYLPIAHMVWA-GGLLAQDGAL-DFAGGTVVHINAAVAGLVGAYLVGKRAGFG--- 211
                      *************************************************.**********.****************************99... PP

                      TSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-HH CS
  Ammonium_transp 182 eeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepw 275
                      +ea+k+hnlp+++ Gt++L++gWfgFNaGsa +an++a+  a+++T++A+a++ l++++ ++  +gk+++lg+++G +AGlVAiT+ac++v + 
       EHU01762.1 212 KEAFKPHNLPMVFTGTAILYVGWFGFNAGSASAANEIAAL-AFLNTVVATAGAVLAWTFGEWALRGKPSLLGACSGFIAGLVAITPACGYVGVG 304
                      9***************************************.***************************************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHCSSHSSTTGGGT-CHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ammonium_transp 276 gAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvvaskisggllsgegkqlvvqligilvilayafvvtlill 369
                      gAliiG+v+g+  ++gv+ lk++l++dD++dv++vHgv+Gi+G++++g+fa ++    + ++g+++g+  q+ +ql+ + v++++++vv++i +
       EHU01762.1 305 GALIIGIVGGLAGIWGVTTLKKWLRVDDPCDVFGVHGVCGIIGCILTGVFASSSLGGVGYEPGVTMGH--QIAIQLLSVGVTIVWSAVVAFIGF 396
                      ******************************************************99999999999996..6*********************** PP

                      HHHHHHTTSB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 370 lllklllgLrvseeeeevglDvaehgetay 399
                      +l ++++gLrv ee+e +glDv++hge+ay
       EHU01762.1 397 KLADMIVGLRVPEEQEREGLDVNSHGENAY 426
                      ****************************99 PP

>> DUF3188  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.9      0.17   1.5e+03       1      14 [.      32      45 ..      32      58 .. 0.87
   2 ?    8.3   0.1    0.0002       1.8      27      45 ..     220     238 ..     216     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
     DUF3188  1 aAplLillgllill 14
                +A ++i  +l++++
  EHU01762.1 32 NAFMMICTALVLFM 45
                78899999999999 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0002
     DUF3188  27 lPallvGlgLivsgavgrg 45 
                 lP +++G++++ +g++g++
  EHU01762.1 220 LPMVFTGTAILYVGWFGFN 238
                 9****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3241.01
//
Query:       EHU01763.1  [L=112]
Description: nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-41  141.4   1.0    1.4e-41  141.2   1.0    1.0  1  P-II      Nitrogen regulatory protein P-II
  ------ inclusion threshold ------
      0.029   14.5   0.0       0.05   13.7   0.0    1.4  1  DUF3240   Protein of unknown function (DUF3240)


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   1.0   1.6e-45   1.4e-41       1     102 []       4     105 ..       4     105 .. 0.99

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 1.6e-45
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 ++++i+p+kle+v+eaL+++g++gltv+evkG+G+qkgh+elyrgaey+v++lpkvk++i++ d+++++vv++i kaa tg+iGDGkiFv ++++viri
  EHU01763.1   4 VTVVIKPFKLEDVREALSSIGIQGLTVSEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDIAIADDQLDEVVDVISKAAYTGKIGDGKIFVAELQRVIRI 102
                 689************************************************************************************************ PP

                 TTT CS
        P-II 100 rtg 102
                 rtg
  EHU01763.1 103 RTG 105
                 **8 PP

>> DUF3240  Protein of unknown function (DUF3240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.6e-06      0.05      18      84 ..      15      82 ..       2      87 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-06
     DUF3240 18 dlvDlLlelpdllsGFtlldakghsrevslati...aEkvrGradkvvveivleeaalerllaeLrkava 84
                d+  +L+     + G t++++kg++r+  +a+    aE      +kv++ i+++ ++l ++++ ++ka  
  EHU01763.1 15 DVREALSSI--GIQGLTVSEVKGFGRQKGHAELyrgAEYSVNFLPKVKIDIAIADDQLDEVVDVISKAAY 82
                555556555..5789***********976654411156555667899*****************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 930.41
//
Query:       EHU01764.1  [L=591]
Description: putative ATP-binding component of an ABC superfamily multidrug transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-41  142.6  10.8    2.5e-41  142.2  10.8    1.2  1  ABC_membrane  ABC transporter transmembrane region
      1e-29  103.8   0.0    1.8e-29  103.0   0.0    1.4  1  ABC_tran      ABC transporter
    2.7e-08   33.5   0.1    2.6e-05   23.8   0.1    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
    8.2e-06   26.3   0.6      2e-05   25.1   0.6    1.6  1  AAA_16        AAA ATPase domain
    0.00024   20.3   0.0    0.00041   19.5   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
    0.00056   20.2   1.0      0.006   16.9   1.0    2.3  1  AAA_22        AAA domain
     0.0016   19.0   0.0     0.0026   18.3   0.0    1.3  1  AAA_23        AAA domain
      0.003   17.5   0.0     0.0059   16.5   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0038   17.3   0.0       0.01   15.9   0.0    1.8  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0045   16.7   0.0      0.012   15.3   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.033   14.3   0.2      0.073   13.2   0.2    1.8  1  AAA_33        AAA domain
      0.034   13.7   0.1       0.22   11.1   0.0    2.1  2  AAA_25        AAA domain
      0.038   14.1   0.0      0.072   13.1   0.0    1.5  1  Dynamin_N     Dynamin family
      0.046   13.5   0.5        0.3   10.8   0.5    2.1  1  DEAD          DEAD/DEAH box helicase
       0.07   13.2   0.0       0.15   12.1   0.0    1.5  1  DUF87         Helicase HerA, central domain
      0.076   12.3   0.0       0.16   11.2   0.0    1.5  1  Zeta_toxin    Zeta toxin
       0.18   12.4   0.0       0.46   11.0   0.0    1.7  1  AAA_18        AAA domain
       0.86    9.6   7.7      0.053   13.5   1.1    2.4  2  YbhQ          Putative inner membrane protein YbhQ


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2  10.8   2.5e-44   2.5e-41       3     271 ..      27     295 ..      25     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 2.5e-44
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGe 99 
                   l++l++ +a ++++  p++ ++++d+l+ k +  + +++ + + ++ll l+ ++l + q  l+n +++ ++ rlr++++++ lrqp++ fdt++vG+
    EHU01764.1  27 LAVLMLWIAAAAEVTGPVLVSYFIDNLVAKHQMPWGTVAGLVVSFILLQLLAAALHYWQALLFNRAAIGVVQRLRTDAMNAALRQPLGAFDTQPVGQ 123
                   67889999**********************888888899********************************************************** PP

                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkaf 196
                   ++sr+tnd++ +rd++ + + ++++s +++ + ++ mf l w+++lv + i+p++++v+ ++ + ++++ ++  +++a++++ ++E++sg+ +++ f
    EHU01764.1 124 IISRVTNDTEVVRDLYVTVVATVLRSAALVGAMMVAMFSLDWRMALVAMLIFPMVLIVMLIYQRYSTPIARRVRSYLADINNGFNEVISGMSVIQQF 220
                   ************************************************************************************************* PP

                   TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 197 greeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271
                   + +++f e+  +a+++++ a +  ++++g+l   + +l+++++++ l++ ++++  g   vg l +f++++  l+
    EHU01764.1 221 RQQARFGERMLEASRSHYLARMETLRLDGFLLRPLLSLFSALILCGLLLLFSFSVPGVFEVGVLYAFITYLGRLN 295
                   **********************************************************************97665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   1.8e-32   1.8e-29       1     137 []     357     505 ..     357     505 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1.8e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l+n++l++     va+vG++G+GKStL++ll+g +  t Ge++ld+++l++ ++e lr+ i++++q+p +  ++ +  n       s+e +  +l++++
  EHU01764.1 357 LSNIDLDVPSRGFVALVGHTGSGKSTLANLLMGYYPATRGEVRLDDRPLNQYSHEALRRGIAMVQQDPVVLADT-LLANvrlgrdISEEAVWSVLEQVQ 454
                 689****************************************************************8888888.444558898877777888888888 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l           +t++++++++LS Gqkq +alar+l++ p++l+lDE+ta
  EHU01764.1 455 LAPlaralpdGIHTRLGEQGNNLSVGQKQLLALARVLVQLPQILILDEATA 505
                 88877777777789999999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0024       2.4      23      42 ..     366     385 ..     357     395 .. 0.86
   2 !   23.8   0.1   2.6e-08   2.6e-05     135     210 ..     469     546 ..     406     554 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
                 TSSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlld 42 
                 s++f a+vG+ GSGKs l +
  EHU01764.1 366 SRGFVALVGHTGSGKSTLAN 385
                 678*************9865 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.6e-08
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvg 210
                        +LS G+k+L+ala ++    v+   + +lDe  a++D    +++ + l++ ++ + ++vi++r  ++++ad+++ 
  EHU01764.1 469 RlgeqgnNLSVGQKQLLALARVL----VQLPQILILDEATANIDSGTEQAIQHTLRTLRQYTTLVVIAHRLSTITEADTILV 546
                 05555559***********9885....4555689*******************************************99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.6     2e-08     2e-05      25     170 .]     368     531 ..     349     531 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif.lrgkcdql......esaipysalaqalareellrqllde....aesaeleawrekleealaavpela 112
                 + v l+G+ G+GKs+l++ l+ ++ +++g + l  +          +++i++   +q+     l   ll++     + +e + w+   + +la   +la
  EHU01764.1 368 GFVALVGHTGSGKSTLANLLMGYYPATRGEVrLDDRPLNQyshealRRGIAM---VQQD-PVVLADTLLANvrlgRDISEEAVWSVLEQVQLA---PLA 459
                 789******************9888885444322222222331112222333...2222.222222222223333444466666666666555...444 PP

      AAA_16 113 gaea..............srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrllesk.pllvv 170
                 +a++              s    +l +l++ l +   p +l+lD++   +d+++ q+++++lr+l +   l+v+
  EHU01764.1 460 RALPdgihtrlgeqgnnlSVGQKQLLALARVLVQ--LPQILILDEATaNIDSGTEQAIQHTLRTLRQYtTLVVI 531
                 4444333566666665553333333333322222..266*****999899**************9995466665 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.1e-07   0.00041     100     156 ..     338     394 ..     306     438 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.1e-07
       T2SSE 100 akeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 + ++tl++l+++ +++ ++ + +   v +rg + + G TgsGK+tl++ l+ + +++
  EHU01764.1 338 SGRITLENLSFAYRDDREVLSNIDLDVPSRGFVALVGHTGSGKSTLANLLMGYYPAT 394
                 56789********************************************99988776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.0   6.1e-06     0.006       4     113 ..     366     520 ..     364     538 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.........................erpevv.....fvtlpsst.sskdllrellralglelka. 70 
                 ++g+++++G++G+GK+tl++ l+  +++     +                         ++++vv     + ++  +   s++    +l++++l   a 
  EHU01764.1 366 SRGFVALVGHTGSGKSTLANLLMGYYPAT----RgevrlddrplnqyshealrrgiamvQQDPVVladtlLANVRLGRdISEEAVWSVLEQVQLAPLAr 460
                 589******************99988643....234668888999988888888888885555554555544444444434444677777777777778 PP

      AAA_22  71 ............erlsseellealeqalrarav.ielliiDEaqh.lr..s.eealeeLr 113
                             ++++++   ++l   +r     +++li+DEa   ++  + +++  +Lr
  EHU01764.1 461 alpdgihtrlgeQGNNLSVGQKQLLALARVLVQlPQILILDEATAnIDsgTeQAIQHTLR 520
                 887777776553222222222444444444444888999999987676542333333333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-06    0.0026      14      38 ..     359     386 ..     340     389 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.6e-06
      AAA_23  14 eidF...skgltlItGpNGaGKTTildA 38 
                 +id+   s+g+++++G++G+GK+T+ + 
  EHU01764.1 359 NIDLdvpSRGFVALVGHTGSGKSTLANL 386
                 5888889******************875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.9e-06    0.0059     100     131 ..     368     399 ..     340     411 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.9e-06
                  SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevs 131
                   +++lvG++G GKStL n l++   +  gev+
   EHU01764.1 368 GFVALVGHTGSGKSTLANLLMGYYPATRGEVR 399
                  6889****************998777777776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05      0.01       2      22 ..     370     394 ..     369     435 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
                 EEEEESTTSSHHHHHHHHHT....S CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg....e 22 
                 va+vG++ +GKStL n l+g    +
  EHU01764.1 370 VALVGHTGSGKSTLANLLMGyypaT 394
                 89****************9844431 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-05     0.012      17      38 ..     362     383 ..     356     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTl 38 
                 +++  +g++ l+G++GsGKSTl
  EHU01764.1 362 LDVPSRGFVALVGHTGSGKSTL 383
                 56777899*************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   7.4e-05     0.073       2      27 ..     370     395 ..     369     541 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.4e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavl 27 
                 v lvG+ GsGKstla  l+   +a++
  EHU01764.1 370 VALVGHTGSGKSTLANLLMGYYPATR 395
                 679************99987666555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022      0.22      29      51 ..     363     385 ..     347     400 .. 0.86
   2 ?   -0.5   0.1      0.76   7.6e+02      85     148 ..     465     531 ..     438     548 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
      AAA_25  29 llpagelallaGapgtGKttlal 51 
                  +p  ++++l+G++g+GK+tla 
  EHU01764.1 363 DVPSRGFVALVGHTGSGKSTLAN 385
                 46999****************95 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.76
      AAA_25  85 elrrRlravgeal..rddarllvldlagv.eslpLfakdrggtl...ltadvdaleaaieevegvrlvvi 148
                 +++ Rl ++g +l    +++ll+l ++ v  +  L+ +++  ++   +++++++  ++++++    lvvi
  EHU01764.1 465 GIHTRLGEQGNNLsvG-QKQLLALARVLVqLPQILILDEATANIdsgTEQAIQHTLRTLRQY--TTLVVI 531
                 5666666666666321.222222222223233334444444433444556666666666663..455554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.2e-05     0.072       1      21 [.     370     390 ..     370     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.2e-05
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 +a+vG++ sGKS+++n L+g 
  EHU01764.1 370 VALVGHTGSGKSTLANLLMGY 390
                 79****************995 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5    0.0003       0.3      17     154 ..     370     527 ..     354     539 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
                 EEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 v + ++TGsGK++ + + +    +++               +  ++  a++      La   l n++   +  +  v +++++v+     ++l  g++ 
  EHU01764.1 370 VALVGHTGSGKSTLANLLMGYYPATRgevrlddrplnqyshEALRRGIAMVQQDPVVLADTLLANVRLGRDISEEAVWSVLEQVQLAPLARALPDGIHT 468
                 667788888888777777764443336777777777766654444456666666667888888888544443333444778899999999999888999 PP

                 EEEEHHHHHHHHHCTSSHCTTE.....EEEEEETHHHHHHTTTHHHHHHHHHHSHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqv.....rflVlDEadrlldqgfsdfinrilnqlpqitc 154
                  +g  g  +++ +++ l l +v     ++l+lDEa    d+g ++ i++ l++l+q t+
  EHU01764.1 469 RLGEQGNNLSVGQKQLLALARVlvqlpQILILDEATANIDSGTEQAIQHTLRTLRQYTT 527
                 99999999998888888866665544688*************************98875 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.15      26      44 ..     370     388 ..     352     390 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
       DUF87  26 lAilgsTGsGKSntvavLl 44 
                 +A +g TGsGKS+++ +L+
  EHU01764.1 370 VALVGHTGSGKSTLANLLM 388
                 799************9996 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.16      19      51 ..     370     402 ..     358     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 + l+G +G+GKs+la+ll  +  ++++ vrld 
  EHU01764.1 370 VALVGHTGSGKSTLANLLMGYYPATRGEVRLDD 402
                 6799*****************999999999985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00046      0.46       1      81 [.     370     452 ..     370     467 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkldklldaleenss....aleegknlvidg 81 
                 ++l G  G+GK+tla+ L   +g+     ++v  ++++l  + +eal++   ++++   +l d+l +n +     +ee+ + v+++
  EHU01764.1 370 VALVGHTGSGKSTLANLL---MGYyPATRGEVRLDDRPLNQYSHEALRRGIAMVQQDPVVLADTLLANVRlgrdISEEAVWSVLEQ 452
                 6899**************...34444455555566666666666666666666666666666666665555555455555555555 PP

>> YbhQ  Putative inner membrane protein YbhQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.2   6.2e+03     100     120 ..      30      50 ..      28      60 .. 0.71
   2 ?   13.5   1.1   5.4e-05     0.053      31      78 ..     164     205 ..     124     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
        YbhQ 100 lllalvGlvllaGpalvslla 120
                 l+l ++  + ++Gp+lvs + 
  EHU01764.1  30 LMLWIAAAAEVTGPVLVSYFI 50 
                 566667777789999998754 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.4e-05
        YbhQ  31 Gwkskalvkvglglvvlyavvlvamlllqrhpearlrevgdfleeltt 78 
                         +++l+ + ++ +vl++ml++qr+ ++  r+v  +l ++  
  EHU01764.1 164 D------WRMALVAMLIFPMVLIVMLIYQRYSTPIARRVRSYLADINN 205
                 2......355667778899************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.37
# Mc/sec: 4767.17
//
Query:       EHU01765.1  [L=589]
Description: putative ATP-binding component of an ABC superfamily multidrug transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-38  131.3   6.5    6.4e-38  131.0   6.5    1.1  1  ABC_membrane  ABC transporter transmembrane region
    4.4e-29  101.8   0.0      9e-29  100.7   0.0    1.5  1  ABC_tran      ABC transporter
     0.0014   18.1   0.0      0.059   12.8   0.0    2.3  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0016   18.7   0.3     0.0083   16.4   0.1    2.4  2  AAA_22        AAA domain
     0.0032   18.0   0.0      0.039   14.5   0.0    2.3  2  AAA_18        AAA domain
     0.0049   16.7   0.0     0.0084   16.0   0.0    1.3  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0098   16.4   0.0      0.019   15.4   0.0    1.4  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.6   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
      0.013   14.7   0.0       0.04   13.1   0.0    1.7  1  NB-ARC        NB-ARC domain
      0.018   14.8   0.1      0.042   13.6   0.1    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.064   13.4   0.1       0.17   12.1   0.1    1.6  1  TMEM223       Transmembrane protein 223
       0.07   12.2   0.0       0.12   11.4   0.0    1.3  1  T2SSE         Type II/IV secretion system protein
       0.15   12.1   0.0       0.49   10.4   0.0    1.9  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.16   10.2   2.5       0.26    9.5   2.5    1.3  1  DUF2070       Predicted membrane protein (DUF2070)
       0.18   11.4   0.0       0.33   10.5   0.0    1.4  1  cobW          CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   6.5   5.4e-41   6.4e-38       5     274 .]      22     291 ..      18     291 .. 0.93

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 5.4e-41
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll....nvtgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   + l+i+  vl++l p+v g ++d ++ ++++ +      ++++++++l+ +++++l  y++      ++ +l ++lr ++++ + rq  +f+ ++++
    EHU01765.1  22 VTLLIIIAVLQLLPPWVVGVVVDGVTHHSMSAS-----GIMMWIGVMLLTAVVVYLLRYVWrvllFGASYQLAVELREDFYRQLSRQQPAFYLRHRT 113
                   56889999*******************999999.....5555666666666666666666644437799**************************** PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  ABC_membrane  98 Gellsrltndvsklrdglgeklglffqslltfvgglivmfy.lgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtV 193
                   G+l++r tndv+++  + ge +++++ sl++ +++li m + ++w+ltl+ l+ +p ++lv+  ++  l++ +k  q a + ++  ++Esl+ ir++
    EHU01765.1 114 GDLIARATNDVDRVVFAAGEGVLTLVDSLVMGCVVLIAMSTqISWQLTLISLIPMPFMALVIHRYGEQLHNRFKLAQAAFSSLNDQTQESLTSIRMI 210
                   *******************************99999988888******************************************************* PP

                   HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 194 kafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   kafg e+   ++f +  ++  ++++++a++++ + +++++++ ++++la+  G++lv +g++++g+l+ f++++ ++++++
    EHU01765.1 211 KAFGLEQHQSQQFADIARDTGEKNLRVARVDARFDPTIYIAIGFANLLAIGGGSWLVWHGDMTLGQLTSFVMYLGLMIWPM 291
                   *******************************************************************************97 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   7.6e-32     9e-29       1     136 [.     352     500 ..     352     501 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 7.6e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+nv+++lk+g ++++ G++G+GK+tLl+l+ ++ + ++G+i++   +l + +l s+r++++v++q+p+lf+++ v++n             e+ ++++
  EHU01765.1 352 LSNVTFQLKPGDMLGLCGPTGSGKTTLLSLIQRHFDIQQGDIRYHAIPLPSLRLDSWRSRLAVVSQTPFLFSDS-VARNialgkpnatqdeiEQAAKMA 449
                 78************************************************************************.88888****996655543333333 PP

                 HHHHH.STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsk.lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +++  l+l++  +t v++++  LSgGqkqr+++arall ++++l+lD++ 
  EHU01765.1 450 CVHEDiLRLPQGYETEVGERGVMLSGGQKQRISIARALLMNAEILVLDDAL 500
                 332221445557799999******************************986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.057        69      28      45 ..     366     383 ..     352     399 .. 0.78
   2 !   12.8   0.0     5e-05     0.059     113     211 ..     432     543 ..     410     550 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.057
                 EEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAil 45 
                  + Gp GSGK+ ll  i+
  EHU01765.1 366 GLCGPTGSGKTTLLSLIQ 383
                 689*********998776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5e-05
                 ETTEEE-HHHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv 194
                 + + ++t+ e+++  ++a ++++                 +LSgG+k+ +++a  +       a + +lD+  +a D +  + + + l++      +i+
  EHU01765.1 432 LGKPNATQDEIEQAAKMACVHEDilrlpqgyetevgergvMLSGGQKQRISIARAL----LMNAEILVLDDALSAVDGRTEHDILHNLRQWGRGRTIII 526
                 55667778888888888888888888888888888888889******988887543....445779********************************* PP

                 E-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N 195 islreemlekadklvgv 211
                  ++r   l++a++++ +
  EHU01765.1 527 SAHRLSALTEASEILVL 543
                 ********999988755 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.3   7.5e+03      22      38 ..     175     200 ..     173     236 .. 0.53
   2 !   16.4   0.1     7e-06    0.0083       7      51 ..     364     404 ..     359     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.3
      AAA_22  22 lrrlleqldeeakaee.........e 38 
                 + r+ eql+++ k ++          
  EHU01765.1 175 IHRYGEQLHNRFKLAQaafsslndqT 200
                 66777777776666554444443330 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 7e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 +l ++G++G+GKTtll  +++ +d+++     + ++  + lps+ 
  EHU01765.1 364 MLGLCGPTGSGKTTLLSLIQRHFDIQQG----DIRYHAIPLPSLR 404
                 6779******************997754....4444444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.3e-05     0.039       2      31 ..     366     393 ..     365     417 .. 0.80
   2 ?    0.6   0.0      0.66   7.9e+02      60      90 ..     511     537 ..     477     545 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.3e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdv 31 
                 +l+G+ G+GKttl   ++++    ++ +d+
  EHU01765.1 366 GLCGPTGSGKTTLLSLIQRHF--DIQQGDI 393
                 59*****************97..4444443 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.66
      AAA_18  60 lldaleenssaleegknlvidghlaelesea 90 
                 +l +l+     ++ g +++i+ h+   + ea
  EHU01765.1 511 ILHNLR----QWGRGRTIIISAHRLSALTEA 537
                 233333....367799999999988777766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     7e-06    0.0084       3      46 ..     366     409 ..     364     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkip 46 
                 +l Gp gsGK++LL +++  +++++  ++ + ++ ++  +++++
  EHU01765.1 366 GLCGPTGSGKTTLLSLIQRHFDIQQGDIRYHAIPLPSLRLDSWR 409
                 799*****************998666666666666555555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05     0.019      12      39 ..     354     382 ..     348     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
      AAA_23  12 dqeidFsk.gltlItGpNGaGKTTildAi 39 
                 ++++++++  +  ++Gp+G+GKTT+l  i
  EHU01765.1 354 NVTFQLKPgDMLGLCGPTGSGKTTLLSLI 382
                 67777777458899***********9876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.9e-05     0.022      85     132 ..     347     395 ..     332     397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  + ++ l++++ +lk  ++  l+G++G GK+tL+  ++ + +++ g+++ 
   EHU01765.1 347 SAGAVLSNVTFQLKPgDMLGLCGPTGSGKTTLLSLIQRHFDIQQGDIRY 395
                  55667788889999889999*******************9999999975 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05      0.04      21      49 ..     363     391 ..     352     509 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdeveg 49 
                 ++++l G  G+GKttl++ i +++d  +g
  EHU01765.1 363 DMLGLCGPTGSGKTTLLSLIQRHFDIQQG 391
                 5899*******************987776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.5e-05     0.042      14      39 ..     354     379 ..     350     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTll 39 
                 + t+++++ ++  l Gp+GsGK+Tll
  EHU01765.1 354 NVTFQLKPGDMLGLCGPTGSGKTTLL 379
                 5788999888999************8 PP

>> TMEM223  Transmembrane protein 223
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00014      0.17      59     115 ..      49     105 ..      41     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
     TMEM223  59 krvgltlicllvgvlilllgllfplRsvkkvvllkggktveivTyapfgkkrsfevp 115
                 + + +++i++ +gv++l++++++ lR+v +v+l  +  +++++  + f ++ s++ p
  EHU01765.1  49 HSMSASGIMMWIGVMLLTAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQQP 105
                 5677899**************************999999888877777777666655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.12     133     151 ..     366     384 ..     316     394 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
       T2SSE 133 lvsGgTgsGKttllyallk 151
                  + G+TgsGKttll  +  
  EHU01765.1 366 GLCGPTGSGKTTLLSLIQR 384
                 578**********987765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00041      0.49      18      46 ..     359     389 ..     345     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00041
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgve 46 
                 l  gd++ L G+ G+GKTtl   + ++++++
  EHU01765.1 359 LkpGDMLGLCGPTGSGKTTLLSLIQRHFDIQ 389
                 2558899***************999999886 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.5   0.00022      0.26      16     137 ..      54     175 ..      45     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
     DUF2070  16 vsllliillalligllaflssklfgillfglpalvaflltlpvlrilggr...ltykrs...lflalltelivviisllaillsallqalvllalvlsl 108
                   ++++i ++ll++++++l + + ++llfg ++ +a+ l   + r l+++   +++++    l+  +++ +  v++     +l+      ++++lv+++
  EHU01765.1  54 SGIMMWIGVMLLTAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQqpaFYLRHRtgdLIARATNDVDRVVFAAGEGVLT------LVDSLVMGC 146
                 456778888888888888888899****************************86666657755555666666666555555555......679****** PP

     DUF2070 109 alvfalrllvlvavsdesllkavlpaliq 137
                 ++ +a+++ + + ++  sl+ + ++al++
  EHU01765.1 147 VVLIAMSTQISWQLTLISLIPMPFMALVI 175
                 ***************99999999888875 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00027      0.33       3      20 ..     365     382 ..     363     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00027
                 EEEEESTTCCHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhl 20 
                 ++l+G+ GsGKTtLl+ +
  EHU01765.1 365 LGLCGPTGSGKTTLLSLI 382
                 6899**********9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 3942.78
//
Query:       EHU01766.1  [L=112]
Description: putative HTH-type transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-21   73.8   0.0    9.9e-21   73.5   0.0    1.1  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   5.5e-25   9.9e-21       3      75 .]      29     101 ..      27     101 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 5.5e-25
                     EEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   3 vslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v+++++++++++ef  +++ +peV+ +yr++G+ydyll++ v+d++++++f+++ ++ + g+ ++++s+++e+
      EHU01766.1  29 VKTTQHSKDWYQEFVSVVQSMPEVMGFYRMAGEYDYLLRIQVADMKSYDAFYKRLVNGVTGLIDVTSSFAMEE 101
                     8899666****************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 869.25
//
Query:       EHU01767.1  [L=344]
Description: pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-42  145.6   0.0    2.5e-42  145.3   0.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   1.4e-46   2.5e-42      19     286 ..      33     303 ..      21     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 1.4e-46
                 CCCCEEEEEEGGGSTTSBTTHHHHHHHHHH.HHTT..TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHH CS
        PALP  19 elgvplflKlEslnptgSfKdRgaeyllar.lkeg..tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvevggdydea 114
                   g+ ++lK+Es++p+gS K R a +l+++ l++g  ++++ v+eassG ++++ A+ a+llGl+++ v+pa++   k++++  +G ++++v +d+ + 
  EHU01767.1  33 FPGIGFYLKDESTHPSGSLKHRLARSLFLYaLANGwiKQGTPVIEASSGSTAVSEAYFARLLGLPFIAVMPASTARRKIEQITFYGGQCHFV-SDPCQL 130
                 557779*******************9988867777*********************************************************.545555 PP

                 HHHHHHHHHHSTTCEE--TTT...SHHHHHHHHTHHHHHHHHTT....TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S CS
        PALP 115 vaaaaelaaegegaylvsqfd...nptviegygtiglEileqlg....gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragr 206
                  a  ++la+e  + ++ +qf      t + g + i+  i +q+     ++p ++++++G+Gg+ a +++++++++ d+r+++v+pe  + +++++r+ +
  EHU01767.1 131 YAESERLARE-LNGHFMDQFTyaeRATDWRGNNNIAESIFRQMAnepfPVPHTLIMSAGTGGTSATLGRYIRYQGCDTRLLVVDPE-HSVFYDYWRNRD 227
                 5556699***.**********999999*************99999999**************************************.778999995555 PP

                 .SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCE CS
        PALP 207 rvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegd 286
                  + +    ++++g++ +   +   + + + +de++ v+d++ ++am +l +  g  ++ps+++++ ++ ++ a++l+++ 
  EHU01767.1 228 ASLTGQRGSMIEGIGRP---RVEPSFMPDVIDEMIKVPDAASIAAMLKLETLLGRKPGPSTGTNFWGM-MQVAKRLRDNN 303
                 55555559*********...5556666666777777********************************.77777777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2578.81
//
Query:       EHU01768.1  [L=231]
Description: enzyme in preQ0 biosynthesis [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-83  277.2   0.0    8.5e-83  277.0   0.0    1.0  1  QueC             Queuosine biosynthesis protein QueC
      4e-05   23.1   0.0    6.7e-05   22.3   0.0    1.3  1  Arginosuc_synth  Arginosuccinate synthase
     0.0012   18.5   0.1     0.0051   16.4   0.1    1.9  1  ThiI             Thiamine biosynthesis protein (ThiI)
     0.0021   17.8   0.0     0.0033   17.1   0.0    1.3  1  Asn_synthase     Asparagine synthase
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.044   13.8   0.0    1.8  2  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
      0.021   14.6   0.1      0.038   13.8   0.1    1.4  1  ATP_bind_3       PP-loop family
      0.033   13.3   0.0      0.049   12.8   0.0    1.3  1  NAD_synthase     NAD synthase
      0.083   12.4   0.0       0.13   11.8   0.0    1.3  1  Diphthami_syn_2  Diphthamide synthase


Domain annotation for each model (and alignments):
>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.0   0.0   3.8e-86   8.5e-83       1     209 [.       3     213 ..       3     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 277.0 bits;  conditional E-value: 3.8e-86
                 EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-GGGGGGSCGGG-----------...--------TTHHH CS
        QueC   1 kavvllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgveehkildldllkelggsaLtdeeievpkeeleeeelpntfVpaRNl 99 
                 +avv++SGG+DStt+l++a+++++ev+++tfdYgqrh++e+++a+++a +lg ++hk+ld+++l++l+ s+Lt+++i vp+ + + ++lp+tfVp+RN+
  EHU01768.1   3 RAVVVFSGGQDSTTCLVQALQRYDEVHCVTFDYGQRHREEIDVARDLALKLGARAHKVLDVTMLNALAVSSLTRDSIPVPSYDPTATGLPSTFVPGRNI 101
                 69************************************************************************************************* PP

                 HHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHHHHTS--EEE-TTTT--HHHHHHHHHHTT...HHHHH-B-STTS.-BTTTTSS CS
        QueC 100 iflslaasyaealgaeaiiiGvneedfsgYPDcrdefvkalnkalnlgedkkieieaPlidlsKaeivklgkelg...vpleetlsCYegeeegkaCge 195
                 +fl+la++ya++++aea+i+Gv+e+dfsgYPDcrdefvkaln+a++lg++++i+ e+Pl++l+Kae+++l++  +   +++e tl+CY+g ++g++Cg+
  EHU01768.1 102 LFLTLASVYAYQVEAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMARNIRFETPLMWLNKAETWALADYWQqltLIREDTLTCYNG-IKGDGCGD 199
                 ***********************************************************************8766666************.******** PP

                 SHHHHHHHHHHHHH CS
        QueC 196 CdaCalRkkgfeea 209
                 C aC+lR++g++++
  EHU01768.1 200 CAACHLRANGLKAY 213
                 ***********987 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     3e-08   6.7e-05       1      59 [.       5      63 ..       5      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3e-08
  Arginosuc_synth  1 vLaysGGlDtsviikllkeklgeeviavavdvGqe.eedldevkekalklgavksvvvDa 59
                     v+ +sGG D + ++    +++ +ev  v+ d Gq  +e++d +++ alklga  + v D+
       EHU01768.1  5 VVVFSGGQDSTTCLVQALQRY-DEVHCVTFDYGQRhREEIDVARDLALKLGARAHKVLDV 63
                     678******999999999999.9**********97369*****************99997 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.3e-06    0.0051       5     115 ..       3     122 ..       1     126 [. 0.64

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.3e-06
        ThiI   5 kvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiekveklaellaeyq.tslevk....lvvvdfkevlkeilekv..........keklt 88 
                 +++++ SgG DS      +l+R  +v++v+++ +     e+i++ ++la +l       l+v+    l v ++++        +            ++t
  EHU01768.1   3 RAVVVFSGGQDSTTCLVQALQRYDEVHCVTFD-YGQRHREEIDVARDLALKLGARAhKVLDVTmlnaLAVSSLTRDS------IpvpsydptatGLPST 94 
                 68999**************************6.77888889999999998886543032332210012333333333......2333333332222344 PP

        ThiI  89 ivllkr.kmlriAekvaeeegakalvtG 115
                  v  +   +l +A+ +a + +a+a++tG
  EHU01768.1  95 FVPGRNiLFLTLASVYAYQVEAEAVITG 122
                 4544431467888888888888888887 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0033      22      79 ..       6      63 ..       2      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
  Asn_synthase 22 alLSGGlDSSliaalaarqsksplktFsigfeekgsdeakyakevaehlgte.htelvl 79
                  +++SGG DS++    a +  + ++++++ ++ +++ +e+++a+ +a +lg + h  l +
    EHU01768.1  6 VVFSGGQDSTTCLVQALQRYD-EVHCVTFDYGQRHREEIDVARDLALKLGARaHKVLDV 63
                  689******986555555554.8********99******************95555555 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     2e-05     0.044       2      54 ..       4      56 ..       3      70 .. 0.91
   2 ?   -0.8   0.0      0.62   1.4e+03      13      35 ..     145     167 ..     141     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                 EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-E CS
  PAPS_reduct  2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglr 54
                  vv +sgG ds+  l  al+  ++v+ v  d g+ ++e i+   +l+ ++g r
   EHU01768.1  4 AVVVFSGGQDSTTCLVQALQRYDEVHCVTFDYGQRHREEIDVARDLALKLGAR 56
                 699******************************************99999877 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.62
                  HHHHHHHHHHCTTHEEEEEE-ST CS
  PAPS_reduct  13 lVllhLalkafkpvpvvfvdtgh 35 
                  +V l +a+++  + p+++++  +
   EHU01768.1 145 AVSLGMARNIRFETPLMWLNKAE 167
                  79999999999999999998755 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.7e-05     0.038       2      44 ..       4      42 ..       3      75 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
                EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHH CS
  ATP_bind_3  2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreesk 44
                ++v +SgG DS++ l+ + +  +    ++ ++++d+g r++ +
  EHU01768.1  4 AVVVFSGGQDSTTCLVQALQRYD----EVHCVTFDYGQRHREE 42
                5899*******998888888766....799*******996543 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.2e-05     0.049      19      79 ..       2      60 ..       1      78 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
                  SEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE- CS
  NAD_synthase 19 kgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievkti 79
                  k +v+  SGG+DS++  +l + +   ++v+ + +   + ++e++  a+ la +lg + +++
    EHU01768.1  2 KRAVVVFSGGQDSTT--CLVQALQRYDEVHCVTFDYGQRHREEIDVARDLALKLGARAHKV 60
                  5679999******97..6777777789****************************998775 PP

>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-05      0.13       2      27 ..       3      28 ..       1      45 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-05
  Diphthami_syn_2  2 kvavlysGGkDsilaLykalkeseve 27
                     +++v++sGG+Ds+  L +al++++  
       EHU01768.1  3 RAVVVFSGGQDSTTCLVQALQRYDEV 28
                     57899****************95533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1781.85
//
Query:       EHU01769.1  [L=134]
Description: 4-hydroxybenzoyl-CoA thioesterase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-16   61.1   0.0    1.6e-16   60.9   0.0    1.0  1  4HBT_2       Thioesterase-like superfamily
    3.6e-14   52.9   0.0    5.2e-14   52.4   0.0    1.3  1  4HBT         Thioesterase superfamily
    1.9e-12   47.0   0.1      1e-05   25.0   0.1    2.0  2  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   2.7e-20   1.6e-16       5     121 ..      11     125 ..       7     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.7e-20
      4HBT_2   5 dvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarveerivv 103
                  +D++ h+nnaryl++leear+++le+ +    ++ +++ + ++ ++ + yrrp+ ++d l+v +++ + + k++ii + +l   +   +a +  + v+
  EHU01769.1  11 HLDVYQHVNNARYLEFLEEARWQWLEEAEA-FTWLLEQKLAFVVVNININYRRPAVLGDVLEVSSDIKQLNGKSGIITQHILLAGSETVVADAALTFVC 108
                 579***********************9999.66666689********************************************667777********** PP

      4HBT_2 104 mdygkrskkapvPpellk 121
                 +d  ++ k +p+  el++
  EHU01769.1 109 IDLRTQ-KAVPLEGELRQ 125
                 ***998.88888877765 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   8.6e-18   5.2e-14       2      74 ..      16      94 ..      15      99 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 8.6e-18
                SSB-HHHHHHHHHHHHHHHHHHTTST......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETT CS
        4HBT  2 GvvhgGvylallDeaagaalrslggr......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrded 74
                 +v++++yl++l+ea++ +l +   +      + ++vvv+++i+++rp+ lgd+l+v   + +l ++s  +++++   +
  EHU01769.1 16 QHVNNARYLEFLEEARWQWLEEAEAFtwlleqKLAFVVVNININYRRPAVLGDVLEVSSDIKQLNGKSGIITQHILLAG 94
                79*********************************************************************99997665 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.7e-09     1e-05     157     184 ..       3      30 ..       1      42 [. 0.89
   2 !   20.5   0.0   3.9e-08   0.00023      49     131 ..      44     127 ..      35     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.7e-09
  Acyl-ACP_TE 157 kelkvrysDlDlnqHvNNvkYlewilev 184
                  + +kvr + lD++qHvNN++Yle+++e+
   EHU01769.1   3 TTIKVRGYHLDVYQHVNNARYLEFLEEA 30 
                  679*********************9986 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.9e-08
  Acyl-ACP_TE  49 lkklnlvWvvakyeieierlpefgdkveietwaes.enklfcyrdfkvrdekgekiieaksvfvlmdqetrrlsrvtdeilaey 131
                  l +++l+ vv +++i+  r+  +gd++e+   ++   +k ++  + ++   +  ++++a  +fv +d  t++++ ++ e+++ +
   EHU01769.1  44 LLEQKLAFVVVNININYRRPAVLGDVLEVSSDIKQlNGKSGIITQHILLAGSETVVADAALTFVCIDLRTQKAVPLEGELRQRL 127
                  77899************************9987662679999999999998888999*********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1079.31
//
Query:       EHU01770.1  [L=107]
Description: hypothetical protein CKS_0214 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-18   64.7   0.0    8.2e-18   64.4   0.0    1.1  1  HHH_3     Helix-hairpin-helix motif
    5.3e-05   22.9   0.0     0.0047   16.7   0.0    2.4  2  HHH       Helix-hairpin-helix motif
    0.00017   22.1   0.0       0.41   11.3   0.0    2.3  2  HHH_5     Helix-hairpin-helix domain
    0.00022   20.7   0.0    0.00034   20.1   0.0    1.3  1  T2SSK     Type II secretion system (T2SS), protein K
  ------ inclusion threshold ------
       0.03   14.4   0.1      0.076   13.1   0.1    1.7  2  HHH_2     Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   2.3e-21   8.2e-18       3      64 ..      43     105 ..      41     106 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 2.3e-21
       HHH_3   3 avgvdiNtAsaeeLqklp.GlgpklAknIvayReknGpfksreeLlkvkglgpktfeqlagfl 64 
                 +++v iN A+ae+L+ +  G+g k+A+ Iv yRe++G+f+ +++L++v+g+g + +e++a +l
  EHU01770.1  43 QEQVSINEATAEQLSAVMnGVGLKKAQSIVSYREEYGRFTAVDQLKDVPGFGHALVERNASRL 105
                 689*************555*****************************************988 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06    0.0047       4      30 .]      47      74 ..      46      74 .. 0.92
   2 ?    3.9   0.0     0.015        55       7      18 ..      81      92 ..      75      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-06
                HHHTSSHHHHHT.STT-SHHHHHHHHHH CS
         HHH  4 glipasreeLla.lPGVGpktAeaIlsy 30
                ++++a+ e+L a   GVG k+A++I sy
  EHU01770.1 47 SINEATAEQLSAvMNGVGLKKAQSIVSY 74
                689*********779***********98 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.015
                TSSHHHHHTSTT CS
         HHH  7 pasreeLlalPG 18
                   +++L+++PG
  EHU01770.1 81 FTAVDQLKDVPG 92
                5679*******9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00012      0.41      31      52 ..      50      72 ..      44      77 .. 0.87
   2 !    8.7   0.0   0.00076       2.7      33      50 ..      83     100 ..      80     106 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                HS-HHHHHT.STTS-HHHHHHHH CS
       HHH_5 31 aadveeLak.ipGiGkktAerii 52
                +a++e+L++ + G+G k+A++i+
  EHU01770.1 50 EATAEQLSAvMNGVGLKKAQSIV 72
                688999***77***********8 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00076
                 -HHHHHTSTTS-HHHHHH CS
       HHH_5  33 dveeLakipGiGkktAer 50 
                 +v++L ++pG+G  ++er
  EHU01770.1  83 AVDQLKDVPGFGHALVER 100
                 689**********99998 PP

>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   9.5e-08   0.00034     180     228 ..      41      90 ..      38     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 9.5e-08
       T2SSK 180 pektkiNiNtasaevLaAlveglslsqaqrllaaRpea.gfrsvadflaa 228
                 p++ ++ iN a ae L+A+  g+ l++aq++++ R+e   f  v++++  
  EHU01770.1  41 PHQEQVSINEATAEQLSAVMNGVGLKKAQSIVSYREEYgRFTAVDQLKDV 90 
                 78999******************************887578888877766 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.1e-05     0.076      29      55 ..      48      75 ..      32      84 .. 0.87
   2 ?   -1.6   0.0      0.87   3.1e+03      34      44 ..      84      94 ..      80      97 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
       HHH_2 29 LkkasleeLlev.ddiGeeiAqsivefF 55
                + +a++e+L++v +++G + Aqsiv++ 
  EHU01770.1 48 INEATAEQLSAVmNGVGLKKAQSIVSYR 75
                789********9679**********995 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.87
       HHH_2 34 leeLlevddiG 44
                +++L  v++ G
  EHU01770.1 84 VDQLKDVPGFG 94
                55666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 927.65
//
Query:       EHU01771.1  [L=622]
Description: peptidyl-prolyl cis-trans isomerase D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-52  175.5  10.2    6.9e-52  175.5  10.2    3.2  3  SurA_N_3    SurA N-terminal domain
    1.9e-34  118.6   7.6    1.9e-34  118.6   7.6    3.7  4  SurA_N_2    SurA N-terminal domain
    5.7e-34  117.6  34.3    6.6e-24   85.1   0.2    5.5  5  Rotamase_2  PPIC-type PPIASE domain
      1e-15   58.3   8.9    3.3e-14   53.4   0.1    4.5  3  Rotamase_3  PPIC-type PPIASE domain
      3e-14   53.7  15.3    2.9e-13   50.6   0.1    4.8  4  Rotamase    PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5  10.2   1.9e-55   6.9e-52       1     161 [.       1     165 [.       1     166 [. 0.98
   2 ?    0.3   0.4      0.15   5.4e+02      92     129 ..     193     231 ..     173     262 .. 0.70
   3 ?   -1.1   0.1      0.39   1.4e+03      28      84 ..     556     614 ..     554     621 .. 0.57

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 1.9e-55
    SurA_N_3   1 MleflrknakswiakillgliilaFvlwGvgsylsgsgns.vakVngekIsraefqqayrrqleqlrqqlggnldaellde...lglrqqvldqlidea 95 
                 M+++lr +++++++ki+lgliil+Fvl+Gvg+yl g++n+ +akVng++Isra+++qa+++++++ +q+lg+++++ + +e   +++rqq+l+qlid+a
  EHU01771.1   1 MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLIGGNNDyAAKVNGQEISRAQLEQAFNNERNRQQQMLGDQFSQLAGNEgymQQMRQQALSQLIDQA 99 
                 9**********************************999656*************************************999****************** PP

    SurA_N_3  96 lllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaangltpeefeaslredlllqkl 161
                 ll+ + k+l++++sd++v+++i s++aFq++GkFd+++Y+++++++g+tp++++++lr++l++q+l
  EHU01771.1 100 LLDTYIKDLHIAISDDQVKQAIFSQSAFQTNGKFDNAKYNAMIRNMGFTPDQYAEALRKQLATQQL 165
                 *****************************************************************8 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
    SurA_N_3  92 idealllqeakklglsvsdeevakeiasip.aFqedGkF 129
                 i+ a l+  a   + +v d+e++++ ++ + +F + ++F
  EHU01771.1 193 IQTATLDVNALAAKQTVNDDEINQYYQQHKsSFMAPEQF 231
                 566666666666666777777777764443356555555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.39
    SurA_N_3  28 wGvgsylsgsg..nsvakVngekIsraefqqayrrqleqlrqqlggnldaelldelglr 84 
                 wGvg+  +g+    +v kV   ++ +a++++ ++ ++++ +q   ++l ++l ++++++
  EHU01771.1 556 WGVGEDMQGNVvlIAVNKVTTGSLPQAQIDEMVKGVTQNNAQLTFEALLQNLRKAAKIK 614
                 67666444433232266777777777777777777666655554455555555555555 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   7.6   5.2e-38   1.9e-34       1     145 []       2     142 ..       2     142 .. 0.97
   2 ?    2.8   3.0     0.026        95      69     132 ..     168     229 ..     148     245 .. 0.68
   3 ?   -1.1   0.1      0.43   1.5e+03      94     138 ..     375     421 ..     358     425 .. 0.59
   4 ?   -1.9   0.0      0.75   2.7e+03     103     130 ..     518     545 ..     475     549 .. 0.68

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 5.2e-38
    SurA_N_2   1 LekiReksqgllvii.iglallaFilgdlfgvgsylfssssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseede...aqlreqvldqlvs 95 
                 ++++R  s+ ++ +i +gl++l+F+   l+gvg+yl +++++++a+VnG++Is+++++qa++++r++ qq+lg++f++ + +e   +q+r+q+l ql++
  EHU01771.1   2 MDNLRAASNHVVLKIiLGLIILSFV---LTGVGNYLIGGNNDYAAKVNGQEISRAQLEQAFNNERNRQQQMLGDQFSQLAGNEgymQQMRQQALSQLID 97 
                 6899****99999999*********...**************************************************99988999************* PP

    SurA_N_2  96 eklleqeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklkqfl 145
                 ++ll+  +++l++ +sd+++++ai ++ a    Fq ++GkFd++k+++++
  EHU01771.1  98 QALLDTYIKDLHIAISDDQVKQAIFSQSA----FQ-TNGKFDNAKYNAMI 142
                 *****************************....**.**********9986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.026
    SurA_N_2  69 qqlgenfdeseedeaqlreqvldqlvseklleqeaeklGltvsdeelqdaiqgnpaikqsFq.pe 132
                 +  + +f  + e+++ +   + ++ ++ + l+ +a  ++ tv d+e++++ q++     sF+ pe
  EHU01771.1 168 AVANTDFMLKNETTKLVDLVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKS---SFMaPE 229
                 3345566665555555666666778****************************554...355333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.43
    SurA_N_2  94 vseklleqeaeklGltvsdeelqda..iqgnpaikqs.Fq.petGkFdk 138
                 v++   + e+ kl  +vs++  +d   + g ++  +s ++  etG F++
  EHU01771.1 375 VKQDKAQAEFYKLQQKVSEAASNDNesLAGAEQ--ASgMKaAETGWFSR 421
                 555556677777777777777666522333333..22455567777766 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.75
    SurA_N_2 103 aeklGltvsdeelqdaiqgnpaikqsFq 130
                 ++ +Glt s ++ +d  +++p  +++F 
  EHU01771.1 518 LKAAGLTLSASKTVDRNTQDPVAQAAFN 545
                 4667888888888888888777555575 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.8     0.093   3.4e+02      23      91 ..     106     181 ..      94     205 .. 0.68
   2 !   18.6   0.4   7.1e-07    0.0025       1      38 [.     209     246 ..     209     248 .. 0.91
   3 !   85.1   0.2   1.9e-27   6.6e-24       2     121 .]     248     369 ..     247     369 .. 0.89
   4 !   20.2   3.0   2.3e-07   0.00081      32     120 ..     376     483 ..     370     484 .. 0.75
   5 !    9.9   5.0   0.00036       1.3      34      88 ..     490     549 ..     484     584 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.093
  Rotamase_2  23 ktlelavvkdqvaaeaalalakag....aekdfaalakgnskkaadlgifesasnlpeelakaaf...alkpgevs 91 
                 k l++a  +dqv+++  ++ a ++     +++++a+ +  ++++ ++  +  ++   ++l++a++    + ++e++
  EHU01771.1 106 KDLHIAISDDQVKQAIFSQSAFQTngkfDNAKYNAMIRNMGFTPDQYAEALRKQLATQQLINAVAntdFMLKNETT 181
                 5667788888888777755544444445456777777777777777777777777777777777633344444444 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 7.1e-07
  Rotamase_2   1 vteaevkayYeankdefskpegktlelavvkdqvaaea 38 
                 v ++e+ +yY+++k++f +pe++++++++ +++ ++e 
  EHU01771.1 209 VNDDEINQYYQQHKSSFMAPEQFRVSYIKLDAASMQEN 246
                 789**************************999888776 PP

  == domain 3  score: 85.1 bits;  conditional E-value: 1.9e-27
  Rotamase_2   2 teaevkayYeankdefskpegktlelavvkdqvaaeaalalakagaekdfaalakgnskk......aadlgifesasnlpeelakaafalkpgevsgpv 94 
                 ++a+++a+Y+++k+++++p++++++++++k++++a+a+la++k+ga  dfa+lak +s++       +d+g+ e ++  p+el k a   ++g++sg++
  EHU01771.1 248 SDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADADAILAQLKGGA--DFAELAKTKSIDpissrkGGDMGWLEPST-TPDEL-KNAGLKEKGQLSGVI 342
                 89*******************************************8..78888888888755455455555888877.78899.777777********* PP

  Rotamase_2  95 etdngyyivkvtevkpakvppfeevkd 121
                 +++ g++i +++++kp++v+p++ev+d
  EHU01771.1 343 KSSVGFLIARLDDIKPEQVKPLAEVRD 369
                 *************************97 PP

  == domain 4  score: 20.2 bits;  conditional E-value: 2.3e-07
  Rotamase_2  32 dqvaaeaalalakag.......aekdfaalakgnskkaadlgifesasnlpe.....elakaaf.......alkpgevsgpvet.dngyyivkvtevkp 110
                  q++a+a+  +++++        ++++a ++++++ kaa++g+f+ ++ +p+     ++++a+f       +  pg++s+++ + +++++++++ + kp
  EHU01771.1 376 KQDKAQAEFYKLQQKvseaasnDNESLAGAEQASGMKAAETGWFSRDD-VPKdldfdAVKQAIFngglvgqNGAPGNNSDIINVdGDRAFVLRISAHKP 473
                 455555553333333344444456888888888888899999998886.777899999*****988877778999*******995556*********** PP

  Rotamase_2 111 akvppfeevk 120
                 ++v p+++vk
  EHU01771.1 474 EAVEPLDKVK 483
                 *********9 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00036
  Rotamase_2  34 vaaeaalalakagaekdfaalakgnskkaadlgifesa.....snlpeelakaafalkpg 88 
                  + ++a ++aka+a+k +a+l+ g+ +  +++g++ sa     +n  +++a+aaf+l++ 
  EHU01771.1 490 IKHDKATQQAKAQADKLLAELKAGKPDVLKAAGLTLSAsktvdRNTQDPVAQAAFNLPEP 549
                 6789999******************99977777555553366666777********9765 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   9.1e-18   3.3e-14      33     115 ..     275     356 ..     213     357 .. 0.89
   2 ?   -0.6   0.9      0.54   1.9e+03      49      81 ..     380     424 ..     362     439 .. 0.49
   3 !    6.6   0.3    0.0031        11      28      51 ..     491     514 ..     471     534 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 9.1e-18
  Rotamase_3  33 eeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvtdk 115
                 +++++a ad +la+lk gadFa+lAk+ S Dp s+ +GG++gw+++ ++ +e ++a ++ +kg++s+v+k+++G+ i++  d 
  EHU01771.1 275 QTKTEADADAILAQLKGGADFAELAKTKSIDPISSRKGGDMGWLEPSTTPDELKNAGLK-EKGQLSGVIKSSVGFLIARLDDI 356
                 5667889***************************************8888888887665.789**************998775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.54
  Rotamase_3  49 egadFaalAkeySdDpasken..GG..........elgwftkgqm 81 
                 ++a+F +l ++ S+  ++ ++  +G          e gwf+++++
  EHU01771.1 380 AQAEFYKLQQKVSEAASNDNEslAGaeqasgmkaaETGWFSRDDV 424
                 444555555555543332221111122222222226677766555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0031
  Rotamase_3  28 kesrseeeakakadsllaalkega 51 
                 k++++ ++aka+ad+lla+lk+g+
  EHU01771.1 491 KHDKATQQAKAQADKLLAELKAGK 514
                 57888999*************886 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.1   4.1e+03      28      68 ..      61      96 ..      42     121 .. 0.59
   2 !   50.6   0.1   8.1e-17   2.9e-13      15      96 ..     275     354 ..     241     355 .. 0.92
   3 ?    3.0   0.8     0.058   2.1e+02      15      55 ..     364     402 ..     356     436 .. 0.71
   4 !    7.6   0.5    0.0021       7.6      10      44 ..     491     526 ..     477     540 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.1
                CTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCC CS
    Rotamase 28 qlksgedtFeelArkySddknsakngGdlgwvekgqlppef 68
                + +++++  + l  ++S   + a n+G +++++++ l++ +
  EHU01771.1 61 NERNRQQ--QMLGDQFS---QLAGNEGYMQQMRQQALSQLI 96
                3333333..44555555...445555555555555555555 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 8.1e-17
                 HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-C.T-B-S-EEETTEEEEEEEE CS
    Rotamase  15 raeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkk.GeisepvetkfGfhiikle 96 
                 + +++a a++il+qlk g+d F+elA+ +S d+ s ++gGd+gw+e+ ++p e+++a   lk+ G++s++++++ Gf i +l+
  EHU01771.1 275 QTKTEADADAILAQLKGGAD-FAELAKTKSIDPISSRKGGDMGWLEPSTTPDELKNAG--LKEkGQLSGVIKSSVGFLIARLD 354
                 5678999*************.*********************************9985..5544*************998886 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTE CS
    Rotamase  15 raeakakaeeileqlksgedtFeelArkySddknsakngGd 55 
                  ae+++++ +  +q k++++ F +l +k+S + +s  n+  
  EHU01771.1 364 LAEVRDEIADAVKQDKAQAE-FYKLQQKVS-EAASNDNESL 402
                 56778888888888888877.888888888.5555555444 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0021
                 E----HHHHHHHHHHHHCCTCCCH.HHHHHHHCCC- CS
    Rotamase  10 asekeraeakakaeeileqlksge.dtFeelArkyS 44 
                 + +k++++aka+a+++l++lk+g+ d ++++    S
  EHU01771.1 491 KHDKATQQAKAQADKLLAELKAGKpDVLKAAGLTLS 526
                 568999*****************9655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1495  (0.0833845); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.22s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4427.43
//
Query:       EHU01772.1  [L=90]
Description: HU, DNA-binding transcriptional regulator, beta subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-35  120.4   0.0    3.1e-35  120.3   0.0    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    7.4e-07   29.3   0.0    7.9e-07   29.2   0.0    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
     0.0015   18.6   0.0     0.0022   18.1   0.0    1.1  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
     0.0017   18.2   0.0     0.0022   17.8   0.0    1.1  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
  ------ inclusion threshold ------
      0.059   13.5   0.0      0.061   13.5   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
       0.16   12.2   0.0       0.31   11.2   0.0    1.5  2  SSPI             Small, acid-soluble spore protein I


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0     1e-38   3.1e-35       1      90 []       1      90 []       1      90 [] 0.99

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1e-38
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     m+k++Li++ia+ ++++k+ a rv++af+ ++++aLk+g++v l gFGtf+v+er+artgrnp+Tg++++ipa kv+ F+++k+lk+avn
       EHU01772.1  1 MNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKSGDEVALVGFGTFSVRERAARTGRNPQTGKEITIPAGKVPGFRAGKALKDAVN 90
                     9***************************************************************************************98 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.7e-10   7.9e-07      33     118 ..       2      89 ..       1      90 [] 0.88

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.7e-10
      HU-HIG  33 dfeeLceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkel 118
                 + ++L+++i+    +s++    vlda+   +++aL+ G  V L ++G+Fs+  ++ ++  ++++ +  +i   k+  fr+gk+lk+++
  EHU01772.1   2 NKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKSGDEVALVGFGTFSVRERAaRTGRNPQTGKEITIPAGKVpGFRAGKALKDAV 89 
                 5689***********************************************9999766677888888888888884499999988775 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.3e-07    0.0022       9      60 ..       9      58 ..       7      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.3e-07
  HU-CCDC81_euk_2  9 elaaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnrkvk 60
                     ++aa+a +s+  + + +++++  ++d+l++g  v+l+  g+G++s+r r+++
       EHU01772.1  9 KIAADADISKAAAGRVLDAFMGSVSDALKSGDEVALV--GFGTFSVRERAAR 58
                     79*********************************99..69******99875 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.3e-07    0.0022       3      51 ..       6      54 ..       4      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.3e-07
  HU-CCDC81_bac_2  3 LansiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslne 51
                     L++ ia+  +is   A + ++ ++ ++ ++L+++ +v l + G++s+ e
       EHU01772.1  6 LIDKIAADADISKAAAGRVLDAFMGSVSDALKSGDEVALVGFGTFSVRE 54
                     8999*****************************************9876 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.061      25      64 ..      22      61 ..       8      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
  HU-CCDC81_euk_1 25 lliWdalgeyieeqlekgkgvhipnfGtFtfeapdldlka 64
                      ++ da++  +++ l++g  v++ +fGtF++  +   ++ 
       EHU01772.1 22 GRVLDAFMGSVSDALKSGDEVALVGFGTFSVRERAARTGR 61
                     5799**************************9965554444 PP

>> SSPI  Small, acid-soluble spore protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.3   9.7e+03      54      62 ..       3      11 ..       2      13 .. 0.70
   2 ?   11.2   0.0    0.0001      0.31      17      41 ..      26      50 ..      15      52 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.3
        SSPI 54 keelletlk 62
                k++l+++++
  EHU01772.1  3 KSQLIDKIA 11
                778888776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0001
        SSPI 17 eeleetIedaiqskeEktLpGLGVl 41
                + +  +++da +s++E +L G G +
  EHU01772.1 26 DAFMGSVSDALKSGDEVALVGFGTF 50
                5677899***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 733.75
//
Query:       EHU01773.1  [L=784]
Description: DNA-binding ATP-dependent protease La [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-97  322.8   0.2    1.3e-96  322.0   0.2    1.4  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    1.7e-42  145.7   0.5    1.7e-42  145.7   0.5    1.8  2  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    1.2e-17   64.6   0.0    2.8e-17   63.4   0.0    1.7  1  AAA             ATPase family associated with various cellula
    1.7e-10   41.1   0.0    1.3e-09   38.2   0.0    2.4  2  AAA_5           AAA domain (dynein-related subfamily)
    5.8e-07   29.4   0.0    1.7e-06   27.8   0.0    1.9  1  ChlI            Subunit ChlI of Mg-chelatase
    5.7e-06   25.5   0.0    1.1e-05   24.6   0.0    1.3  1  AAA_PrkA        PrkA AAA domain
    7.6e-05   23.2   0.0    0.00042   20.7   0.0    2.3  2  AAA_16          AAA ATPase domain
    0.00055   19.7   0.0     0.0015   18.3   0.0    1.7  1  IstB_IS21       IstB-like ATP binding protein
      0.002   18.0   0.0     0.0061   16.4   0.0    1.8  1  AAA_3           ATPase family associated with various cellula
     0.0028   17.4   0.1       0.03   14.1   0.0    2.7  3  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0076   16.8   1.7      0.014   15.9   0.0    2.5  1  AAA_18          AAA domain
     0.0089   16.3   0.2       0.11   12.8   0.2    2.6  1  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.054   13.5   0.0    2.3  1  AAA_14          AAA domain
      0.016   15.2   0.1       0.36   10.7   0.0    2.5  2  NACHT           NACHT domain
      0.016   14.7   3.6      0.068   12.7   1.6    2.4  3  ECH_2           Enoyl-CoA hydratase/isomerase
      0.033   13.7   0.0      0.099   12.1   0.0    1.8  1  Citrate_bind    ATP citrate lyase citrate-binding
      0.034   14.6   2.7      0.073   13.5   2.7    1.6  1  T3SSipB         Type III cell invasion protein SipB
      0.035   14.3   0.4       0.13   12.4   0.1    2.1  2  AAA_33          AAA domain
       0.05   13.5   0.0       0.17   11.8   0.0    1.9  1  RsgA_GTPase     RsgA GTPase
      0.099   12.7   0.0        0.3   11.1   0.0    1.8  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.13   12.5   0.1        2.1    8.6   0.1    2.5  2  AAA_28          AAA domain
       0.13   12.1   0.0       0.26   11.1   0.0    1.4  1  Birna_VP4       Birnavirus VP4 protein
       0.13   12.7   0.0       0.54   10.7   0.0    2.1  1  RNA_helicase    RNA helicase
       0.79    9.2   3.9        1.3    8.5   3.9    1.4  1  Exonuc_VII_L    Exonuclease VII, large subunit
        1.4    9.4   3.5        2.1    8.8   0.1    2.8  2  ABC_tran        ABC transporter
        1.5    8.9   6.3         18    5.4   0.4    3.1  2  Bap31_Bap29_C   Bap31/Bap29 cytoplasmic coiled-coil domain


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.0   0.2   1.9e-99   1.3e-96       2     204 ..     570     772 ..     569     773 .. 0.99

  Alignments for each domain:
  == domain 1  score: 322.0 bits;  conditional E-value: 1.9e-99
                 E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT-EEEEEE CS
       Lon_C   2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfekkdihihv 100
                 ++ ++l+++lG+++f++++a++e++vG+vtGlawtevGGdlltie++ +pgkgkl+ tG+lg+vm+es+qaal++vr+rae+lgi+ +++ek+dih+hv
  EHU01773.1 570 INGENLKDFLGVQHFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINGDFYEKRDIHVHV 668
                 7889*********************************************************************************************** PP

                 -S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EESBHHHHH CS
       Lon_C 101 PeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilveevdevl 199
                 PeGa+PkdGPsaG++++talvs ltg++vr++vamtGeitLrG+vlpiGGlkekllaa+r+gik v++P+en++dle+iP++v  +lei++v++++evl
  EHU01773.1 669 PEGATPKDGPSAGIAMCTALVSCLTGNPVRSNVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKVVLIPDENKRDLEEIPQNVIADLEIHPVKRIEEVL 767
                 *************************************************************************************************** PP

                 HHHB- CS
       Lon_C 200 kaalv 204
                 + al+
  EHU01773.1 768 NLALE 772
                 **996 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.5   2.5e-45   1.7e-42       1     207 [.      10     201 ..      10     202 .. 0.92
   2 ?   -2.3   0.2         5   3.5e+03     139     167 ..     215     239 ..     206     286 .. 0.54

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 2.5e-45
  LON_substr_bdg   1 elpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaide.esiselysvGtvarIvqilrlddgrikvvlegleRvk 94 
                     e+p+lpl+++v++P++++pl v+r+ksi+++e+++d dk+   + lv  +qk+a+++ ++i++l+svGt+a + q+l+l+dg++kv++egl+R+ 
      EHU01773.1  10 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKK---IMLV--AQKEASTDePGINDLFSVGTIASVLQMLKLPDGTVKVLVEGLQRAN 99 
                     79**************************************...****..********************************************** PP

  LON_substr_bdg  95 ikklekekeegylvaeveiieddsepedsdslqkelkalvqeiiekikkslarellkllleielllkyedlenpyrLadlvaailpfsneekqel 189
                     i+ l   ++   +va+ e++     pe ++ +q++l ++  + +e +      +l+k++ + e l++++++++ +rLad vaa++p++  +kq++
      EHU01773.1 100 ITTL--ADNGDHFVAQAEYLV---SPEIEEREQEVLVRTAINQFEGYI-----KLNKKI-PPEVLTSLNNIDDAARLADTVAAHMPLKLADKQSV 183
                     ****..56888889***9993...366666666888888888888887.....666666.9********************************** PP

  LON_substr_bdg 190 LeeldvedRlkkvlelLk 207
                     Le  dv +Rl+ ++ +++
      EHU01773.1 184 LEMSDVNERLEYLMAMME 201
                     *************99997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
  LON_substr_bdg 139 ekikkslarellkllleielllkyedlen 167
                     +++k    +++ k+ +e++l+++++++++
      EHU01773.1 215 NRVK----KQMEKSQREYYLNEQMKAIQK 239
                     3333....233333334444444443332 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   4.1e-20   2.8e-17       1     128 [.     352     489 ..     352     493 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 4.1e-20
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++l+GppG+GKT+l +++ak +g++++++ +  ++++         y+g ++ k+ + ++++  k+    +++DEid++ ++        + + +++Ll
  EHU01773.1 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEaeirghrrtYIGSMPGKLIQKMAKVGVKN--PLFLLDEIDKMSSDM-------RGDPASALL 441
                 58*********************************889*******************999999988..9**********6666.......99******* PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrki 128
                 ++ld +++              s+v++++++n++ +++ +ll +R++++ 
  EHU01773.1 442 EVLDPEQNIafndhylevdydLSDVMFVATSNSM-NIPAPLL-DRMEVIR 489
                 *******99************899*********8.7889999.9999875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.6   1.1e+03      49      94 ..     120     165 ..     109     205 .. 0.76
   2 !   38.2   0.0   1.9e-12   1.3e-09       2     137 ..     352     484 ..     351     485 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.6
                 ........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5  49 ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrl 94 
                 ++ +++++ +lvr a +    ++   +++++evl sL+++ +  rl
  EHU01773.1 120 PEIEEREQEVLVRTAINQFEGYIKLNKKIPPEVLTSLNNIDDAARL 165
                 6667777888888887666666666678889999999887666555 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 1.9e-12
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHH....HHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesev....lnsLlslleer 92 
                 ++LvGppG+gK++l +++a+a++r+++ ++l     e++++g+r++        +++l +++     +  +++lDE+++++s++    +++Ll +l+ +
  EHU01773.1 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRT---YIGSMPGKLIQKMAkvgvKNPLFLLDEIDKMSSDMrgdpASALLEVLDPE 447
                 79*******************************************7...5666788888888888889999**********988444477999999965 PP

                 E.EE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5  93 r.llleeggelvkaknddllerfrviatanpldrslnelspalrsR 137
                 + + +++   +v+ +  d    ++++at+n+ +     + ++l++R
  EHU01773.1 448 QnIAFNDHYLEVDYDLSD----VMFVATSNSMN-----IPAPLLDR 484
                 516666666666666655....********988.....56666666 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.5e-09   1.7e-06       2     121 .]     614     740 ..     613     740 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.5e-09
        ChlI   2 evdvskglpkftivGlpdtavkeskervrsalkn.......sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGs 93 
                 e+ +  g+ k+t +G + + ++es +   + ++        +g  ++++ i v +     +k+G++  +++  ++++ l  +++++++ + Ge+ l G+
  EHU01773.1 614 ETACVPGKGKLTYTGSLGEVMQESIQAALTVVRAraeklgiNGDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRSNVAMTGEITLRGQ 712
                 55566666667777776666666666555555555555666777789999************************************************* PP

        ChlI  94 lrpvkgvlpialaakkegikkvivpken 121
                 + p+ g+ + +laa++ gik v++p en
  EHU01773.1 713 VLPIGGLKEKLLAAHRGGIKVVLIPDEN 740
                 *************************998 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.5e-08   1.1e-05      50     111 ..     311     372 ..     288     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-08
    AAA_PrkA  50 netikkypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkl 111
                  + +k  + ++ d +Gle + ++i+ey+   ++  + +  il l+GP g Gk+sl +++ k+
  EHU01773.1 311 KDLRKAQETLDTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGVGKTSLGQSIAKA 372
                 456778889999*******************************************9999776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.1   6.3e+03       2      17 ..      30      45 ..      30      53 .. 0.78
   2 !   20.7   0.0   6.1e-07   0.00042       4      60 ..     326     385 ..     324     447 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.1
      AAA_16  2 lvGReeeleqLlsale 17
                +vGRe+ ++ L++a++
  EHU01773.1 30 FVGREKSIRCLEAAMD 45
                89******88888776 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 6.1e-07
      AAA_16   4 GReeeleqLlsale...rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkc 60 
                 G e+  +++l++l    rv++  ++++ l+G++GvGK+sl +++++a  ++++  + g  
  EHU01773.1 326 GLERVKDRILEYLAvqsRVSKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGV 385
                 666666777777774446666666*********************998888766644443 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.2e-06    0.0015      15     134 ..     316     444 ..     304     449 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.2e-06
   IstB_IS21  15 aqktledidfraarsldkrkvkeLatlsfiekken..ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaralkr 105
                 aq+tl+  d+   + ++ r+++ La  s ++k ++  ++l+Gp+GvGK+ l  ++++++ r+ +++    v+d   e++ +rr       gkl +++++
  EHU01773.1 316 AQETLD-TDHYGLERVKDRILEYLAVQSRVSKIKGpiLCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA-EIRGHRRTyigsmpGKLIQKMAK 412
                 566774.45555558999999***99999998765338899***************9999988888777776643.34444432221111444443333 PP

   IstB_IS21 106 .llkvdllilDdlgllpld..qaeaellfevi 134
                   +k  l +lD++     d   + a+ l+ev+
  EHU01773.1 413 vGVKNPLFLLDEIDKMSSDmrGDPASALLEVL 444
                 13455677777776544331145566666666 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.8e-06    0.0061       4     113 ..     354     475 ..     351     481 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.8e-06
       AAA_3   4 legvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke....kefefkkGpvfanllladeinrappktq....salleame.erqvtv 93 
                 l g PG++kt l +++aka + ++ r+ +      ++i G++     +       ++ k  v + l+l dei++ ++ ++    salle+++ e+++++
  EHU01773.1 354 LVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSmpgkLIQKMAKVGVKNPLFLLDEIDKMSSDMRgdpaSALLEVLDpEQNIAF 452
                 6789***************************999******8654433324323345677788999*********98876433449*****986889999 PP

       AAA_3  94 egethklp...epflvlatqnPi 113
                 +++  +++   +  + +at n +
  EHU01773.1 453 NDHYLEVDydlSDVMFVATSNSM 475
                 99887776222345677888876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.3e-05      0.03       8      60 ..     323     376 ..     317     392 .. 0.68
   2 ?   -2.0   0.0       3.7   2.6e+03     135     154 ..     467     486 ..     403     489 .. 0.65
   3 ?   -1.6   0.0       2.8   1.9e+03      91     110 ..     755     773 ..     744     781 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-05
      RuvB_N   8 eyigqekvkeklkifieaakkreeald..hvllyGpPGlGkttlakiiakelgvk 60 
                 ++ g e+vk+++  +++  ++r +++    + l+GpPG+Gkt+l + iak  g k
  EHU01773.1 323 DHYGLERVKDRILEYLA-VQSRVSKIKgpILCLVGPPGVGKTSLGQSIAKATGRK 376
                 56677777777654443.3344333331134589***************988765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.7
      RuvB_N 135 lvgattragllssPlrdrfg 154
                 +  at+ +  + +Pl dr+ 
  EHU01773.1 467 MFVATSNSMNIPAPLLDRME 486
                 33466677777777777766 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.8
      RuvB_N  91 deihrlsraveevlysamed 110
                  eih ++  +eevl  a+e+
  EHU01773.1 755 LEIHPVK-RIEEVLNLALEN 773
                 4899886.589******997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-05     0.014       2      32 ..     353     381 ..     352     456 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdva 32 
                 +l G+pGvGKt+l++ ++k +  g+++  +a
  EHU01773.1 353 CLVGPPGVGKTSLGQSIAKAT--GRKYVRMA 381
                 799****************98..66655554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   0.00016      0.11       6      55 ..     350     390 ..     347     452 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskd 55 
                  il+++G++G+GKT l + +++           ++++v++ l +  + ++
  EHU01773.1 350 PILCLVGPPGVGKTSLGQSIAKAT---------GRKYVRMALGGVRDEAE 390
                 589**************9999987.........66666655555555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.8e-05     0.054       2      76 ..     349     428 ..     348     490 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.8e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpe.....kllelileklke..ekktylflDEiqev 76 
                 ++il+++G+  vGKT l + ++k      ++++ ++l   rd+++    +     +++  + +k+ +   k+ +++lDEi ++
  EHU01773.1 349 GPILCLVGPPGVGKTSLGQSIAKATG---RKYVRMALGGVRDEAEIrGHRrtyigSMPGKLIQKMAKvgVKNPLFLLDEIDKM 428
                 5799**************99999988...99*****99888844321121334554444444432224568899******987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00052      0.36       3      26 ..     352     375 ..     350     381 .. 0.87
   2 ?    1.4   0.0      0.39   2.7e+02      84     108 ..     419     440 ..     394     449 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 ++l G++G+GKT L q++a a  +
  EHU01773.1 352 LCLVGPPGVGKTSLGQSIAKATGR 375
                 799***************998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.39
                 EEEEE-STT-SS-TCH......... CS
       NACHT  84 LlilDglDelvtdlgqkekqpvrtl 108
                 L++lD +D++++d++     p+  l
  EHU01773.1 419 LFLLDEIDKMSSDMRG---DPASAL 440
                 7***********9887...444444 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.8   4.7e+03     212     240 ..      55      83 ..      36     103 .. 0.69
   2 ?   12.7   1.6   9.8e-05     0.068     179     268 ..     191     290 ..     165     331 .. 0.74
   3 ?    0.8   0.0      0.39   2.7e+02     151     201 ..     515     562 ..     509     579 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.8
                 --SHHHHHHHHHHHT.-S-TTTHHHHHH. CS
       ECH_2 212 eselaekreaidrlfsadsveeiveaLek 240
                 ++e ++ ++ i++lfs  +++++++ L+ 
  EHU01773.1  55 QKEASTDEPGINDLFSVGTIASVLQMLKL 83 
                 35555678899999999999999999973 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.8e-05
                 HHHHHHHTT...........--------......----SHHHHHHHHHHHT.-S.-TTTHHHHHH.......T..--SHHHHHHHHHHHHS-HHHHHHH CS
       ECH_2 179 aleeaLaelessd...eeaveevleelaeeaeeeeeeselaekreaidrlfsad.sveeiveaLek......aeaeedewakktletlkkrsPtslkvt 267
                 +  e L ++ +s+    +  +++ ++++++ e++++e  l+e+++ai++  ++  +  + +eaL++        +e++e a++ l++lk +sP+s+++t
  EHU01773.1 191 ERLEYLMAMMESEidlLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMdDTPDEYEALKRkidaakMPQEAREKAEAELQKLKMMSPMSAEAT 289
                 33344444434434544444555566666666666689999******999965547888888888667666655677889***************9988 PP

                 H CS
       ECH_2 268 l 268
                 +
  EHU01773.1 290 V 290
                 6 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.39
                 HHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........------ CS
       ECH_2 151 alTGarlkgadalaaglathyvpseklealeeaLaelessdeeaveevlee 201
                 al +++++ +d   +g+   y +++ + +le++L++l ++   av+++l +
  EHU01773.1 515 ALKSSEITVEDSAIIGIIRYYTREAGVRSLERELSKLCRK---AVKTLLMD 562
                 6788999999************************998554...55555544 PP

>> Citrate_bind  ATP citrate lyase citrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014     0.099      79     155 ..      73     152 ..      60     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
  Citrate_bind  79 tildlmtrekrpdg..kvliiGggianftnvaatfk.giiraleelksklkehkvkiyvrrggpnyqeglkamkelgeel 155
                   ti +++   k pdg  kvl+ G + an+t++a++ + ++ +a   ++ +++e + ++ vr++ ++++  +k  k++  e+
    EHU01773.1  73 TIASVLQMLKLPDGtvKVLVEGLQRANITTLADNGDhFVAQAEYLVSPEIEEREQEVLVRTAINQFEGYIKLNKKIPPEV 152
                   5666666667788888*****************986155566667789999**************999999988876665 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.7   0.00011     0.073      17     100 ..     203     288 ..     191     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
                 HHCHHHHHHHHH..HHHHHHHHTTTT.T----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------- CS
     T3SSipB  17 nkSLsqLenrla..awkamskaqqea.asklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePek 100
                 +  L q e+r+   + k+m k+q+e  + +  +++q+ l+e+++  d++ea   k+d ak   ++a +k+++ +++lk ++P + e 
  EHU01773.1 203 EIDLLQVEKRIRnrVKKQMEKSQREYyLNEQMKAIQKELGEMDDTPDEYEALKRKIDAAKMP-QEAREKAEAELQKLKMMSPMSAEA 288
                 55566777766422678899998886244566999**********************99876.5677788899999****8887765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.3     3e+03      94     124 ..     192     222 ..     149     239 .. 0.63
   2 ?   12.4   0.1   0.00018      0.13       2      28 ..     352     380 ..     351     401 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.3
      AAA_33  94 rlgvpvrivvvetdeetlkeRlakRaangdd 124
                 rl++  +++  e d  + ++R++ R +++ +
  EHU01773.1 192 RLEYLMAMMESEIDLLQVEKRIRNRVKKQME 222
                 4444455555555555555666666554422 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avll 28 
                 + lvG+pG+GK+ l ++++k++g  +v+ 
  EHU01773.1 352 LCLVGPPGVGKTSLGQSIAKATGrkYVRM 380
                 568******************99998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.17      75     122 ..     325     372 ..     306     397 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                  TTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  75 lgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  +g+e ++ +  +  ++++  +++k+ + +lvG+ GvGK++L  +++  
   EHU01773.1 325 YGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGVGKTSLGQSIAKA 372
                  4444444444555566677789999****************9988775 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00044       0.3      12      46 ..     342     376 ..     327     380 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00044
                 HHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  12 kklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 +++ k  g +++L G+ G+GKT l +++aka g +
  EHU01773.1 342 SRVSKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376
                 4444433678********************99876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1     0.003       2.1       3      28 ..     353     379 ..     351     397 .. 0.83
   2 ?    0.7   0.0      0.81   5.6e+02      51     106 ..     497     554 ..     488     578 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.003
      AAA_28   3 vitGgestGKTtlleaLaar.gypvvp 28 
                 +++G+++ GKT+l + +a+  g ++v+
  EHU01773.1 353 CLVGPPGVGKTSLGQSIAKAtGRKYVR 379
                 89****************654888775 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.81
      AAA_28  51 dllafa.ervleeqleeeaaaaankvlfcDrglldtlaYaraygge..aeaeleaaare 106
                 ++l++a +++l +q+e+ a  +++++++ D  ++ ++ Y+ ++ g    e+el + +r+
  EHU01773.1 497 EKLNIAkQHLLPKQIERNAL-KSSEITVEDSAIIGIIRYYTREAGVrsLERELSKLCRK 554
                 56666646667777766555.79***************996665542677777776664 PP

>> Birna_VP4  Birnavirus VP4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00037      0.26     180     239 ..     674     734 ..     662     738 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00037
   Birna_VP4 180 pvvGsssqLaiaaddllksdvdekvPi...vaftGevvdd.avgeiegvdlklaaahelGlpLl 239
                 p  G+s  +a+     l+s  + + P+   va+tGe++    v +i g++ kl aah+ G++++
  EHU01773.1 674 PKDGPSAGIAM--CTALVS-CLTGNPVrsnVAMTGEITLRgQVLPIGGLKEKLLAAHRGGIKVV 734
                 55688888888..444555.34444444579******87679*******************975 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00078      0.54       1      26 [.     352     377 ..     352     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00078
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++l+Gp+g+GK++l +++aka  +k+
    EHU01773.1 352 LCLVGPPGVGKTSLGQSIAKATGRKY 377
                   589***************99988766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.9    0.0019       1.3     165     270 ..     187     295 ..     113     325 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
  Exonuc_VII_L 165 eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlk......ekleekkerlkklkerle...lleekkerleel 252
                   ++ ++rle l   ++s  +ll+         e+r+++++kkq++k+++++   + ++k       +++++ +++++lk++++   + +e++e++e+ 
    EHU01773.1 187 SDVNERLEYLMAMMESEIDLLQV--------EKRIRNRVKKQMEKSQREYYLNE-QMKaiqkelGEMDDTPDEYEALKRKIDaakMPQEAREKAEAE 274
                   33333333333333444444444........45555544444443333332222.121122222234444455555555555554677888888888 PP

  Exonuc_VII_L 253 eeklealsp...lkvLkrGya 270
                    +kl+ +sp   +++  rGy 
    EHU01773.1 275 LQKLKMMSPmsaEATVVRGYI 295
                   888888888444567888885 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0       2.1   1.4e+03      76      96 ..     213     245 ..      73     322 .. 0.72
   2 ?    8.8   0.1    0.0031       2.1      10      34 ..     348     372 ..     341     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.1
                 HHHH............HHHTCHHHHHHHSTTGG CS
                 xxxx............xxxxxxxxxxxxxxxxx RF
    ABC_tran  76 vren............esdeeiekalsklglke 96 
                 +r++            + +e+++++ ++lg  +
  EHU01773.1 213 IRNRvkkqmeksqreyYLNEQMKAIQKELGEMD 245
                 222233333334444444444555555555544 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0031
                 TTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagl 34 
                 +g ++ +vG+ G GK++L + +a+ 
  EHU01773.1 348 KGPILCLVGPPGVGKTSLGQSIAKA 372
                 688999************9999876 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.4     0.026        18      19      31 ..     216     228 ..     204     229 .. 0.84
   2 ?    4.8   0.9     0.041        29       2      25 ..     233     259 ..     232     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.026
  Bap31_Bap29_C  19 alKkQaeglakEY 31 
                     +KkQ+e  ++EY
     EHU01773.1 216 RVKKQMEKSQREY 228
                    68*********** PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.041
  Bap31_Bap29_C   2 eiekLkkeLkkkk...kDlealKkQae 25 
                    + ++ +keL +++    ++ealK++++
     EHU01773.1 233 QMKAIQKELGEMDdtpDEYEALKRKID 259
                    78999******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1425  (0.0794802); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 5502.43
//
Query:       EHU01774.1  [L=423]
Description: ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-48  164.2   0.0    4.7e-48  163.5   0.0    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
    6.5e-21   73.9   3.4    1.8e-20   72.5   3.4    1.8  1  zf-C4_ClpX       ClpX C4-type zinc finger
    3.8e-17   62.1   1.9    5.9e-17   61.5   0.4    2.1  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.6e-15   57.7   0.0    3.6e-15   56.5   0.0    1.6  1  AAA              ATPase family associated with various cellul
    3.6e-07   29.8   0.2    0.00011   21.7   0.2    3.1  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
    8.7e-07   29.0   0.1    8.7e-06   25.8   0.1    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
    1.8e-06   28.3   0.2    1.9e-05   24.9   0.2    2.6  1  AAA_22           AAA domain
    6.8e-06   25.9   0.1    2.2e-05   24.3   0.1    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    9.2e-06   24.9   0.0    1.5e-05   24.2   0.0    1.2  1  MCM              MCM P-loop domain
     0.0004   20.8   0.2     0.0013   19.2   0.0    2.0  1  AAA_16           AAA ATPase domain
    0.00069   19.2   0.0     0.0016   18.0   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
    0.00087   19.0   0.0       0.17   11.6   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
     0.0034   16.6   0.2      0.015   14.5   0.0    1.9  2  TIP49            TIP49 P-loop domain
     0.0038   17.3   0.0     0.0089   16.2   0.0    1.5  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.005   17.4   0.1      0.016   15.7   0.0    1.9  1  AAA_18           AAA domain
     0.0052   16.5   0.1     0.0083   15.9   0.1    1.3  1  AAA_24           AAA domain
     0.0054   16.8   0.0      0.011   15.7   0.0    1.5  1  AAA_14           AAA domain
     0.0062   15.6   0.0      0.012   14.7   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
      0.007   16.2   0.0      0.014   15.3   0.0    1.5  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0071   16.3   0.0       0.16   11.9   0.0    2.6  2  NACHT            NACHT domain
     0.0081   15.5   0.2        1.6    8.0   0.0    2.5  2  ATPase           KaiC
     0.0081   16.7   0.0      0.025   15.1   0.0    1.9  1  ABC_tran         ABC transporter
     0.0082   15.9   0.1      0.017   14.9   0.1    1.4  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.046   13.9   0.0    1.5  1  AAA_33           AAA domain
      0.048   13.7   0.0      0.097   12.7   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.049   13.4   0.1       0.13   12.1   0.1    1.7  1  AAA_29           P-loop containing region of AAA domain
        0.1   11.9   0.0       0.28   10.5   0.0    1.6  2  AAA_8            P-loop containing dynein motor region D4
        0.1   12.6   0.1       0.35   10.9   0.1    2.0  1  ResIII           Type III restriction enzyme, res subunit
       0.11   12.3   0.9       0.63    9.8   0.1    2.4  3  DEAD             DEAD/DEAH box helicase
       0.11   12.9   0.0       0.36   11.3   0.0    2.0  1  RNA_helicase     RNA helicase
       0.12   12.6   0.0       0.41   10.8   0.0    1.9  1  DUF1296          Protein of unknown function (DUF1296)
       0.12   11.8   0.0       0.25   10.8   0.0    1.5  1  PhoH             PhoH-like protein
       0.13   12.6   0.0        0.3   11.3   0.0    1.7  1  AAA_28           AAA domain
       0.13   11.2   0.0       0.19   10.6   0.0    1.3  1  AAA_PrkA         PrkA AAA domain
       0.18   12.1   1.2        4.1    7.7   0.3    2.8  1  AAA_19           AAA domain
        0.2   12.1   2.0       0.35   11.3   2.0    1.7  1  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   9.3e-51   4.7e-48       3     170 ..     112     310 ..     110     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 9.3e-51
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSreg 94 
                 +++ill+gptg+Gkt+la++la+ll+v    ++++ada++l+e    +e+ve+++++l+++ +++v+++++Giv++DEidKi++k   +s+++dvS+eg
  EHU01774.1 112 KSNILLIGPTGSGKTLLAETLARLLDV----PFTMADATTLTEagyvGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKsdnPSITRDVSGEG 206
                 689***********************8....********************************************************99********** PP

                 HHHHHHHHHH--EE-.........----.--EE-TT-EEEEEE--TTHHHHTTTS-S..................TTTTSGGG--HHHHHHTT--HHHH CS
       AAA_2  95 VqrdLLqileggtlt.........dkqg.rkvdtknilfImtgafgsskisdesrsk..................eeeeekkkeeveeelkkglipEll 165
                 Vq++LL+++eg+++          ++q+  +vdt++ilfI++gaf++ ++  ++r +                  +e e  ++ e+e+++k+glipE++
  EHU01774.1 207 VQQALLKLIEGTVAAvppqggrkhPQQEfLQVDTSKILFICGGAFAGLDKVISQRVEtgsgigfgatvkgksqkaTEGELLAQCEPEDLIKFGLIPEFI 305
                 ************************99999******************999998888899*************99888999999**************** PP

                 TT--E CS
       AAA_2 166 gRlpe 170
                 gRlp+
  EHU01774.1 306 GRLPV 310
                 ***97 PP

>> zf-C4_ClpX  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   3.4   3.6e-23   1.8e-20       1      39 []      13      50 ..      13      50 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 3.6e-23
  zf-C4_ClpX  1 krCSFCgksesevkklIagpngvyICdeCvelcneiiee 39
                ++CSFCgks++ev++lIagp+ vyICdeCv+lcn+ii+e
  EHU01774.1 13 LYCSFCGKSQHEVRRLIAGPS-VYICDECVDLCNDIIRE 50
                59******************7.***************86 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       8.1     4e+03       4      21 ..     156     173 ..     155     184 .. 0.73
   2 !   61.5   0.4   1.2e-19   5.9e-17       1      75 [.     317     395 ..     317     399 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.1
                    HHHHHHHHHHHHHHHHHS CS
  ClpB_D2-small   4 eelkkIvdlalkklekrl 21 
                    e++++I+++ l+k    +
     EHU01774.1 156 EDVENIIQKLLQKCDYDV 173
                    678889999888876555 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 1.2e-19
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSST CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelke 75 
                    L++e+l +I+++   al k+++ l + +gvele+ deal a+a+k++++++GAR+Lr+i++  ++ +++++++ +++++
     EHU01774.1 317 LSEEALIQILREpknALTKQYQALFNlEGVELEFRDEALTAIAKKAMSRKTGARGLRSIVEGALLETMYDLPSMEDVEK 395
                    89**********************999********************************************99888764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   7.3e-18   3.6e-15       1      98 [.     115     220 ..     115     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 7.3e-18
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHH.HHHHHHH..HHTS...TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekki.relfkea..keka...kpsilfiDEidalaksr...sgseseeeervvnqL 89 
                 +ll+Gp G GKTlla+ +a+ l+v+f   ++++l+   yvge  ++i ++l++++         +  i+ iDEid++ +++   s + + ++e v+++L
  EHU01774.1 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTeAGYVGEDVENIiQKLLQKCdyD--VqkaQRGIVYIDEIDKISRKSdnpSITRDVSGEGVQQAL 211
                 69*********************************667***99887626677777541..244456*************99988778999999****** PP

                 HHHHHHTTT CS
         AAA  90 lteldgvkk 98 
                 l+ ++g   
  EHU01774.1 212 LKLIEGTVA 220
                 ****99765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   2.1e-07   0.00011      21      56 ..     111     147 ..      75     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.1e-07
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsll.pplseeeale 56 
                   G+ n+ll+Gp GsGKt+la+ l+ ll  p ++++a  
    EHU01774.1 111 GKSNILLIGPTGSGKTLLAETLARLLdVPFTMADATT 147
                   899*********************9933566666555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.7e-08   8.7e-06       1      79 [.     114     191 ..     114     195 .. 0.74
   2 ?   -2.0   0.0       6.6   3.3e+03      81     111 ..     207     236 ..     202     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.7e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraar..egeilvlDEveraes 79 
                 ++lL+Gp+G+gK+ lae la++l  ++++   t  t++  +   +e   ++  +  d  +    +  +  i+++DE++++++
  EHU01774.1 114 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIiQKLLQKCDYDV----QkaQRGIVYIDEIDKISR 191
                 689********************9999999999988877777777632233333333333....234556999999999985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.6
                 HHHHHHHHHHSSEEE..-SSSEEE---.... CS
       AAA_5  81 vlnsLlslleerrllleeggelvkaknddll 111
                 v+++Ll+l+e     +++ g++ + ++++ l
  EHU01774.1 207 VQQALLKLIEGTVAAVPPQGGRKHPQQEF-L 236
                 78999999999999999999998887764.3 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   3.9e-08   1.9e-05       4     105 ..     111     190 ..     108     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.9e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 +++ ++++G++G+GKT+l+++l++ l         ++++   +++ +t+   + +++ ++++            ll+++   ++++++ +++ iDE+++
  EHU01774.1 111 GKSNILLIGPTGSGKTLLAETLARLL---------DVPFTMADATTLTEAGYVGEDVENIIQ-----------KLLQKCDYDVQKAQR-GIVYIDEIDK 188
                 57889*********************.........888888888888887788888888877...........477788888888888.8888888888 PP

      AAA_22 103 lrs 105
                 + s
  EHU01774.1 189 I-S 190
                 7.4 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   4.3e-08   2.2e-05       5     100 ..      73     193 ..      70     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.3e-08
      RuvB_N   5 sleey.igqekvkeklkifieaakkreeald..........hvllyGpPGlGkttlakiiakelgvklkitsgPvlekag....dlaalltnl...... 82 
                 +l++y igqe+ k+ l++++    kr ++ d           +ll+Gp G Gkt la+ +a+ l+v + ++ + +l +ag    d+  ++++l      
  EHU01774.1  73 HLDDYvIGQERAKKVLAVAVYNHYKRLRNGDtsngielgksNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGyvgeDVENIIQKLlqkcdy 171
                 6788846*************99888866544223333333369********************************999874445677777765322222 PP

      RuvB_N  83 ....eekdvlfideihrlsrav 100
                      ++ +++idei ++sr+ 
  EHU01774.1 172 dvqkAQRGIVYIDEIDKISRKS 193
                 2221235689999999998865 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     3e-08   1.5e-05      17     137 ..      69     193 ..      50     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3e-08
                 HHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSB...BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE.EEESSSSSSSHSSSEEEEESSSSSEE CS
         MCM  17 klvksiapsiyghedvkkaillqlfggvkkkledktk...lrgdinvllvgdpgtaKsqlLkyveklaprav.ytsgkgssaagLtaavvrdeetgefv 111
                 ++ + +   ++g+e  kk +++++   +k+ ++ +t+     g+ n+ll+g  g +K+ l +++++l++    ++ +++ ++ag +   v +   +++ 
  EHU01774.1  69 EIRHHLDDYVIGQERAKKVLAVAVYNHYKRLRNGDTSngiELGKSNILLIGPTGSGKTLLAETLARLLDVPFtMADATTLTEAGYVGEDVEN-IIQKLL 166
                 56667778899*************9999987665554454689***************9999999988776414456677899999998855.555566 PP

                 EEET.HHHHTTTSEEEEESGGGSTCHH CS
         MCM 112 leaG.alvladkGvcciDefdkmkeed 137
                  ++   +  a++G+++iDe+dk++++ 
  EHU01774.1 167 QKCDyDVQKAQRGIVYIDEIDKISRKS 193
                 6666157789************99864 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.6e-06    0.0013      16      69 ..      96     182 ..      90     243 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.6e-06
      AAA_16  16 lervrsgrp........elvllsGesGvGKsslvrellralekd....................ggif.lrgkcdql....esaipy 69 
                 ++r+r g++        +++ll+G+ G+GK+ l+++l+r l                       ++i  l +kcd      +++i y
  EHU01774.1  96 YKRLRNGDTsngielgkSNILLIGPTGSGKTLLAETLARLLDVPftmadattlteagyvgedveNIIQkLLQKCDYDvqkaQRGIVY 182
                 5566666666666677799*******************8665555555555555555555544322224555555554444444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.1e-06    0.0016      33     110 ..     112     187 ..     106     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.1e-06
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld.kekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDDln 110
                 k ++ll+GptG+GKt+++++l + ld + ++  +t    a    +++ +ii++ l+k     y  ++ ++ +v++D+++
  EHU01774.1 112 KSNILLIGPTGSGKTLLAETLARLLDvPFTMADATTLTEAGYVGEDVENIIQKLLQKCD---YDVQKAQRGIVYIDEID 187
                 6799*********************9444444445555566677788888888887776...78888888999999886 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00034      0.17      21      44 ..     111     134 ..      92     155 .. 0.85
   2 ?    4.8   0.0     0.041        20      89     108 ..     173     192 ..     167     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
                      SSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraihe 44 
                       ++++l+ G +G+GK+lla+++ +
       EHU01774.1 111 GKSNILLIGPTGSGKTLLAETLAR 134
                      5689***************99865 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.041
                      HHHTTTSEEEEETGGGS-HH CS
  Sigma54_activat  89 fekadgGtlfLDeigelple 108
                      ++ka+ G++++Dei +++ +
       EHU01774.1 173 VQKAQRGIVYIDEIDKISRK 192
                      799************99865 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.1e-05     0.015      23      88 ..      75     148 ..      62     169 .. 0.72
   2 ?   -2.3   0.0         4     2e+03     233     303 ..     331     404 ..     319     415 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-05
                 XXXXXXXXXXXXXXXXXX....XXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  23 eeglvGqkkareaagviv....elikekk......laGravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 ++ ++Gq++a++  +v v    + ++++       l+   +Ll Gp+g+Gkt la ++++ l   vpf++  ++ +
  EHU01774.1  75 DDYVIGQERAKKVLAVAVynhyKRLRNGDtsngieLGKSNILLIGPTGSGKTLLAETLARLLD--VPFTMADATTL 148
                 5667888888887766553222334444311111144457********************996..***99888765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4
                 XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX CS
       TIP49 233 narpqdllslllqllkskkteiteklreeinkkva..kyveegkaeivpGvlf...iDevhmlDiecfsylnrale 303
                 na ++++ +l+  +l++ + e +++  + i kk +  k    g   iv G l     D   m D+e     + ++e
  EHU01774.1 331 NALTKQYQALF--NLEGVELEFRDEALTAIAKKAMsrKTGARGLRSIVEGALLetmYDLPSMEDVEKVVIDESVIE 404
                 44445555555..555555555555555555543311333455555666555322134445555555555555555 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-05    0.0089      20      84 ..     111     192 ..     106     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-05
                      -SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.............HHHHHH.......TTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  20 sklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.............ldlleq.......akggtLylkdiadlska 84 
                       k++++l+G+ Gsgk+l A++L+        +f++++  +l+             ++ll++       a+ g+ y+ +i+++s++
       EHU01774.1 111 GKSNILLIGPTGSGKTLLAETLARLLDV---PFTMADATTLTeagyvgedveniiQKLLQKcdydvqkAQRGIVYIDEIDKISRK 192
                      6899***************999988766...66666666555566777777778877777777776668************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.2e-05     0.016       1      25 [.     115     158 ..     115     206 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...................g 25 
                 Ill G+ G+GKt la+ L+++l +                   +
  EHU01774.1 115 ILLIGPTGSGKTLLAETLARLLDVpftmadattlteagyvgedV 158
                 99******************997777666666666665553332 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.7e-05    0.0083       3      82 ..     113     194 ..     111     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfi.........dtekGlksldadkfpdieswedfldevvelaaeladyktlviDtideleelcl 82 
                  +il++Gp g+GKT la +l  + l +          te+G+   d+ ++     ++++l++++++  ++a+  ++ iD id++ +  +
  EHU01774.1 113 SNILLIGPTGSGKTLLAETL-ARLLDVpftmadattLTEAGYVGEDVENI-----IQKLLQKCDYD-VQKAQRGIVYIDEIDKISRKSD 194
                 589*****************.66666655556666678888755555554.....59999999998.5556678999999999988665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.3e-05     0.011       5      77 ..     115     190 ..     112     218 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla..dpekllelilek.lke....ekktylflDEiqevp 77 
                 +++ G+  +GKT l+++l++ l      +   +  + +++ +   d e++++ +l+k         ++ ++++DEi +++
  EHU01774.1 115 ILLIGPTGSGKTLLAETLARLLD---VPFTMADATTLTEAGYVgeDVENIIQKLLQKcD-YdvqkAQRGIVYIDEIDKIS 190
                 7899**************96666...333333333333333221133345555555532.1467789999******9984 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.4e-05     0.012     119     153 ..     105     136 ..      58     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
       T2SSE 119 aevlrkavrerglilvsGgTgsGKttllyallkei 153
                 ++ ++     + +il+ G+TgsGKt l+ +l   +
  EHU01774.1 105 SNGIELG---KSNILLIGPTGSGKTLLAETLARLL 136
                 5555555...88**************999887665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-05     0.014       3      42 ..     116     156 ..     115     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.drdvegltdelsggggi 42 
                 +liGp gsGK+ L ++l  l ++ +++++ +t ++ g++g+
  EHU01774.1 116 LLIGPTGSGKTLLAETLARLLDVpFTMADATTLTEAGYVGE 156
                 79********************9977777777777666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00032      0.16       3      24 ..     115     136 ..     113     148 .. 0.90
   2 ?    1.1   0.0      0.64   3.2e+02      77     115 ..     173     217 ..     153     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00032
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 ++l G+ GsGKT L++ la+++
  EHU01774.1 115 ILLIGPTGSGKTLLAETLARLL 136
                 799***************9987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.64
                 CCSCCCEEEEEE-STT-SS-TCH...............HHHHHCT CS
       NACHT  77 lelperlLlilDglDelvtdlgq......kekqpvrtlLselirk 115
                 ++ ++r    +D +D+++++ ++         + v++ L +li++
  EHU01774.1 173 VQKAQRGIVYIDEIDKISRKSDNpsitrdVSGEGVQQALLKLIEG 217
                 6789999999*******9988888888875555566666677776 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0032       1.6      19      38 ..     112     131 ..      81     134 .. 0.87
   2 ?    4.9   0.1     0.028        14      86     142 ..     143     201 ..     136     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0032
      ATPase  19 grvvlitGepGtGKtifalq 38 
                 ++ +l+ G +G+GKt++a++
  EHU01774.1 112 KSNILLIGPTGSGKTLLAET 131
                 4679*************986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.028
      ATPase  86 idasesae.esaeekdkedleelieelaeaikeikakrvviDsitgl.ayeekeavaRe 142
                  da++ +e ++  e+ ++ +++l+++  + +++ +   v iD i+ +  ++++++ +R+
  EHU01774.1 143 ADATTLTEaGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIsRKSDNPSITRD 201
                 55555443144455788889999************************777777777775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     5e-05     0.025      12      37 ..     113     138 ..     103     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5e-05
                 SEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkp 37 
                 + + ++G++G+GK+ L+++la+ll+ 
  EHU01774.1 113 SNILLIGPTGSGKTLLAETLARLLDV 138
                 46789*****************9986 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.4e-05     0.017      47      68 ..     112     133 ..     105     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-05
   IstB_IS21  47 kenivllGpsGvGKshlaialg 68 
                 k ni+l+Gp+G GK+ la +l+
  EHU01774.1 112 KSNILLIGPTGSGKTLLAETLA 133
                 68*****************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.2e-05     0.046       2      25 ..     115     140 ..     115     188 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.2e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..a 25 
                 +ll+G+ GsGK+ lae l++ l+  +
  EHU01774.1 115 ILLIGPTGSGKTLLAETLARLLDvpF 140
                 689***************99887643 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019     0.097      19      46 ..     112     139 ..      72     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 ++ ilL G+ G+GKT l+  la+ l+v 
  EHU01774.1 112 KSNILLIGPTGSGKTLLAETLARLLDVP 139
                 356********************99875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00025      0.13      19      46 ..     110     136 ..      99     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
      AAA_29  19 idlkg.atlltGpsGsGKSTllDAiqalL 46 
                 +     ++ll+Gp+GsGK+ l   ++ lL
  EHU01774.1 110 LG--KsNILLIGPTGSGKTLLAETLARLL 136
                 43..3379**********98776666665 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00056      0.28      23      78 ..     111     170 ..     108     190 .. 0.70
   2 ?   -2.6   0.0       5.3   2.6e+03     192     208 ..     352     367 ..     334     385 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00056
       AAA_8  23 prghaLlvGvgGsGrqsltkLAafiaelelf....qievtkkykekefredlkkllkkag 78 
                  ++++Ll+G  GsG+  l++  a ++++ +     +  ++  y  ++ ++ ++kll+k+ 
  EHU01774.1 111 GKSNILLIGPTGSGKTLLAETLARLLDVPFTmadaTTLTEAGYVGEDVENIIQKLLQKCD 170
                 689***************998888887777622223334455666666666666666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.3
       AAA_8 192 eeaLleVaekvleeeee 208
                 +eaL+++a+k +++ ++
  EHU01774.1 352 DEALTAIAKKAMSR-KT 367
                 79999999999987.33 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0007      0.35      22      48 ..     110     136 ..      80     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0007
                 .TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierl 48 
                  ++ ++l+  +TG+GKTl+a  l++ l
  EHU01774.1 110 LGKSNILLIGPTGSGKTLLAETLARLL 136
                 5677999***********997777665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0013      0.63      12      31 ..     110     129 ..     104     135 .. 0.85
   2 ?   -0.7   0.0       2.1   1.1e+03     121     144 ..     177     200 ..     151     211 .. 0.75
   3 ?   -2.1   0.0       5.8   2.9e+03      97      97 ..     371     371 ..     306     401 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                 HTTCEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        DEAD  12 lgggdvlvaaeTGsGKTlaf 31 
                 lg+ ++l+ ++TGsGKTl +
  EHU01774.1 110 LGKSNILLIGPTGSGKTLLA 129
                 56789************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.1
                 TEEEEEEETHHHHHHTTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 121 qvrflVlDEadrlldqgfsdfinr 144
                 q  ++ +DE+d+++ ++  + i r
  EHU01774.1 177 QRGIVYIDEIDKISRKSDNPSITR 200
                 445667899999998877776665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.8
                 T CS
                 x RF
        DEAD  97 g 97 
                 g
  EHU01774.1 371 G 371
                 1 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00071      0.36       1      25 [.     115     139 ..     115     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00071
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkk 25 
                   i+l Gp+g GK++la++La+ l   
    EHU01774.1 115 ILLIGPTGSGKTLLAETLARLLDVP 139
                   6899*************99877644 PP

>> DUF1296  Protein of unknown function (DUF1296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00082      0.41      19      57 ..     157     195 ..     151     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00082
     DUF1296  19 hsdeeIyamLkecnmDpneavqkLLsqDtfheVkskrdk 57 
                   ++ I + L+ c++D+ +a    ++ D + ++ +k d+
  EHU01774.1 157 DVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDN 195
                 55667999****************************985 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0005      0.25      21      40 ..     114     133 ..      98     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
                 EEEEE--TTSSTTHHHHHHH CS
        PhoH  21 ivfaiGpaGtGKtylavala 40 
                  +  iGp+G+GKt+la +la
  EHU01774.1 114 NILLIGPTGSGKTLLAETLA 133
                 46789***********8876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00059       0.3       1      25 [.     114     139 ..     114     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00059
      AAA_28   1 kivitGgestGKTtlleaLaar.gyp 25 
                 +i ++G+ ++GKT l+e La+  ++p
  EHU01774.1 114 NILLIGPTGSGKTLLAETLARLlDVP 139
                 589*****************765444 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00039      0.19      81     114 ..     105     138 ..      97     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
    AAA_PrkA  81 aqrleerkqilyllGPvggGksslverlkkllea 114
                 +++ e  k  ++l+GP g+Gk+ l+e+l +ll++
  EHU01774.1 105 SNGIELGKSNILLIGPTGSGKTLLAETLARLLDV 138
                 667788899999******************9975 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3    0.0082       4.1       7      33 ..     109     135 ..     104     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0082
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhival 33 
                 +l ++++l++++ G+GKT + ++  +l
  EHU01774.1 109 ELGKSNILLIGPTGSGKTLLAETLARL 135
                 577899************877766555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0    0.0007      0.35      15      43 ..     108     136 ..      94     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0007
      AAA_23  15 idFskgltlItGpNGaGKTTildAiklaL 43 
                 i+++k   l++Gp+G+GKT + + +   L
  EHU01774.1 108 IELGKSNILLIGPTGSGKTLLAETLARLL 136
                 99999999***********9999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 2887.64
//
Query:       EHU01775.1  [L=207]
Description: ATP-dependent Clp protease proteolytic subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-90  301.0   0.0    3.4e-90  300.8   0.0    1.0  1  CLP_protease  Clp protease


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.8   0.0   1.9e-94   3.4e-90       2     181 ..      26     205 ..      25     206 .. 0.99

  Alignments for each domain:
  == domain 1  score: 300.8 bits;  conditional E-value: 1.9e-94
                   SSSECHHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-T CS
  CLP_protease   2 kgeraydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagek 98 
                   +ger+ydiysrllker+ifl+++++d++an i+aq+l+Leae+p+kdi+lyinspGG +tag++Iydtm++ikpdvstic+G+a+Smg++ll+ag+k
    EHU01775.1  26 RGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTK 122
                   899********************************************************************************************** PP

                   TGEEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease  99 gkRfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   gkRf+lpn+r+mihqPlgg+qgqa+diei+a+e+lk+k+r+ne++a+htg+sle+ie+d++rd+flsa+eAveyGL+d+++++
    EHU01775.1 123 GKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKQRMNELMAEHTGKSLEEIERDTERDRFLSASEAVEYGLVDSILTH 205
                   ********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1515.31
//
Query:       EHU01776.1  [L=434]
Description: peptidyl-prolyl cis/trans isomerase (trigger factor) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-43  146.8   2.2      5e-43  146.8   2.2    2.8  3  Trigger_N  Bacterial trigger factor protein (TF)
    2.1e-40  138.4   8.6    2.1e-40  138.4   8.6    2.7  3  Trigger_C  Bacterial trigger factor protein (TF) C-terminus
    7.4e-14   51.8   0.2    1.9e-13   50.5   0.2    1.7  1  FKBP_C     FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> Trigger_N  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   2.2   8.3e-47     5e-43       1     140 [.       1     143 [.       1     144 [. 0.97
   2 ?   -0.9   0.3      0.32   1.9e+03      51      51 ..     267     267 ..     191     314 .. 0.58
   3 ?   -1.2   0.3       0.4   2.4e+03      60      89 ..     391     414 ..     380     431 .. 0.49

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 8.3e-47
                 -EEEEEEEETTEEEEEEEE-HHHCHHHHHHHHHHHHTTS-BTTC-TT---CCCHHHHCTCCCHHHHHHHHHHCCCCCCCCCS..-EE.EE.E...EEET CS
   Trigger_N   1 mkvtvekleglkvkltvevpaeevekavekalkklakkvkipGFRkGkvPrsiiekrygkevleealeellnealeeaieeeklepvgqpei...elee 96 
                 m+v+ve+++gl +++t++v a+ +e+av+k+l ++akkv+i+GFRkGkvP++i+ +ryg++v++++l +l+ +++ +ai +ek++p+g p+    e++e
  EHU01776.1   1 MQVSVETTQGLGRRITITVAADSIESAVKKELVDVAKKVRIDGFRKGKVPMNIVAQRYGAAVRQDVLGDLMTRNFVDAIIKEKINPAGAPNYvpgEYKE 99 
                 9******************************************************************************************88655999 PP

                 TC.EEEEEEEEE--EEEE.XCCCSEEEEEXHHHHHHHHHHHHHH CS
   Trigger_N  97 gkdleftvevevkPevelgdykglevekeevevtdeevdeelee 140
                 g+d+++ ve+ev+Pevel+ ++++evek++vevtd++vd +le+
  EHU01776.1 100 GQDFTYAVEFEVYPEVELKGLENIEVEKPQVEVTDADVDTMLET 143
                 ******************88*********************997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.32
                 C CS
   Trigger_N  51 r 51 
                 r
  EHU01776.1 267 R 267
                 1 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.4
                 CC.CHHHHHHHHHHCCCCCCC.CCS..-EE.E CS
   Trigger_N  60 ke.vleealeellnealeeai.eeeklepvgq 89 
                 ++ +++++ + +l+e+  ea+          +
  EHU01776.1 391 NNeLMNNMRNVALEEQAVEAVlA--------K 414
                 44455555555555555554431........2 PP

>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.059   3.5e+02     105     126 ..     126     147 ..     121     156 .. 0.86
   2 ?   -2.9   0.1      0.98   5.9e+03      93     117 ..     230     254 ..     228     256 .. 0.78
   3 !  138.4   8.6   3.6e-44   2.1e-40       1     161 [.     262     412 ..     262     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.059
                 HHTT----HHHHHHHHHHHCCC CS
   Trigger_C 105 keekievteeelkeeleelasq 126
                 ++ ++evt+++++++le l +q
  EHU01776.1 126 EKPQVEVTDADVDTMLETLRKQ 147
                 56689***********999886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHHHHTT----HHHHH CS
   Trigger_C  93 rVklgLvleeiakeekievteeelk 117
                 + k+ +vl+++  +e  e tee +k
  EHU01776.1 230 DAKFEIVLKKVETRELPELTEEFIK 254
                 5688888888888888888888776 PP

  == domain 3  score: 138.4 bits;  conditional E-value: 3.6e-44
                 CHHHHHHHHCCCCHHHHHHHHHHHHHCCCHCCCGCGEEEEE-HHHHHHHHHHHHHHHHHCT...TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHH CS
   Trigger_C   1 tLeeLkedlrkqleeekeeatkeelkealldkLvekaeidiPeslveeeidrllrqakqqleqqGldleeylelsgsseeelreelkeeAekrVklgLv 99 
                 +++ L++++rk++e+e++ a+++++k +++d Lve+++id+P +l++ eid l+rqa+q++   G+++++         e +re ++e+A++rV +gL+
  EHU01776.1 262 SVAGLRAEVRKNMERELKGAIRNRVKTQAIDGLVEANPIDVPAALIDSEIDVLRRQAAQRF---GGNEKQ-------ALELPRELFEEQAKRRVVVGLL 350
                 6789*********************************************************...******.......9********************* PP

                 HHHHHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHHH.HHHHHHHHHHHHHHHC CS
   Trigger_C 100 leeiakeekievteeelkeeleelasqygmepeevkeflkkneqls.alkedileekvvdlll 161
                 l+e++++++++++e+++k  +ee+as+y+ +p+ev+ef++kn++l+ ++++  lee++v+++l
  EHU01776.1 351 LGEVIRTHELKADEDRVKVLIEEMASAYE-DPQEVIEFYSKNNELMnNMRNVALEEQAVEAVL 412
                 *****************************.******************************997 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.2   3.2e-17   1.9e-13       5      93 ..     158     237 ..     154     238 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3.2e-17
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                 a   d++t++++g + dg++f++   +a+++ + +G+g++i+Gfee+++g k+Ge+ t+ ++++  Y++++l+g      ++  Fe+ L
  EHU01776.1 158 AGAEDRATLDFTGSV-DGEEFEGG--KASDFVLAMGQGRMIPGFEEGVVGHKAGETFTIDVKFPDDYHAENLKG------KDAKFEIVL 237
                 55689**********.********..**********************************************66......788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3308.96
//
Query:       EHU01777.1  [L=104]
Description: regulator of penicillin binding proteins and beta lactamase transcription (morphogene) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-27   95.5   0.5      2e-27   95.2   0.5    1.1  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.5   1.1e-31     2e-27       2      76 .]      11      83 ..      10      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 1.1e-31
        BolA  2 tealkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhRlvyalLkeelakgiHALslktktpee 76
                + a++p hlev+deS++h+++  ag+e+HFkvvivs+ F+g++ +arhR++y  L+ ela+++HAL+l+t+t +e
  EHU01777.1 11 RLAFEPAHLEVHDESYRHNVP--AGSESHFKVVIVSDVFTGQRFLARHRAIYGELSAELAGSVHALALHTYTLKE 83
                669******************..9************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 854.92
//
Query:       EHU01778.1  [L=192]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-52  175.7   3.5    6.1e-52  175.5   3.5    1.1  1  Lipoprotein_16  Uncharacterized lipoprotein
     0.0032   17.9   2.6     0.0061   17.0   2.6    1.5  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach
  ------ inclusion threshold ------
      0.014   15.4   0.2      0.029   14.4   0.2    1.5  1  AcylCoA_DH_N    Acyl-CoA dehydrogenase N terminal


Domain annotation for each model (and alignments):
>> Lipoprotein_16  Uncharacterized lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   3.5     1e-55   6.1e-52       1     159 []      29     188 ..      29     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 1e-55
  Lipoprotein_16   1 Pkit.asanqtnqnatvslsskDsRsaqevakinegdgelallsasedvrlllqqalrqqlssqGfrignnannnleveveklladvkegtlryk 94 
                     Pki+ ++ +++ +++tvs++++D+R +q++ak+n+ dg+l+ l++s+d+r+llq++l++q++++G+++g+n++++l++ v++l+adv++g +ry+
      EHU01778.1  29 PKIQlPQRDPSLMGITVSINGADQRRDQALAKVNR-DGQLVSLTPSRDLRFLLQEVLEKQMTARGYMVGPNGAVDLQIIVNNLYADVTQGDVRYS 122
                     88898999***************************.*********************************************************** PP

  Lipoprotein_16  95 ikakvqlevtaenakgk.ltknynasaeregalsasnakiekalnkllsevlkeilnDpelqqflk 159
                     i++k++++++a++++g+ ++kny++++++ega+sa+n+ki++a+n +ls+v++++++D++++ f+k
      EHU01778.1 123 ITTKADISIVATAKNGNkQIKNYRQTYSVEGAFSATNQKITNAVNSTLSDVIADMAQDTSVNDFIK 188
                     ****************************************************************96 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.6     1e-06    0.0061       2      18 .]       3      19 ..       3      19 .. 0.97

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1e-06
      LPAM_1  2 KKillalgalllLsGCs 18
                KK+l+ l+a+++L+GC+
  EHU01778.1  3 KKLLFPLLAAFILAGCA 19
                9***************6 PP

>> AcylCoA_DH_N  Acyl-CoA dehydrogenase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   4.8e-06     0.029       5      17 ..      72      84 ..      70      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-06
  AcylCoA_DH_N  5 PlRDmrFvLyEvL 17
                  P RD+rF+L EvL
    EHU01778.1 72 PSRDLRFLLQEVL 84
                  88**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 1724.93
//
Query:       EHU01779.1  [L=490]
Description: muropeptide transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-32  112.3  33.1    2.3e-32  112.3  33.1    2.2  2  MFS_1     Major Facilitator Superfamily
    3.1e-13   49.1   4.8    1.8e-10   39.9   4.8    2.3  1  Acatn     Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3  33.1   2.5e-36   2.3e-32       1     350 [.      16     365 ..      16     368 .. 0.88
   2 !   14.6  21.1   1.3e-06     0.011      94     246 ..     324     476 ..     323     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 2.5e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalga.avaslplGrlsdrf.....Grrr.vlllglllfalglllllfa..sslw.lll 89 
                 lll++f s+l  ++++ +l  +++ d +i+  +ig+ ++l  +g+  v+ +++++++drf     Grrr +ll++ l+++++++++ f   s    l++
  EHU01779.1  16 LLLLGFASGLPLALTSGTLQAWMTVD-NIDLKTIGF-FSL--VGQaYVFKFLWSPMMDRFtppllGRRRgWLLITQLALVASIVAMGFLqpSRDLtLMA 110
                 57889999999999999999888888.888888887.222..333489************99999*****************55555644677887*** PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +l vl ++++++   +  a+ +d+ p+eerg++ ++  +g+ l++++  +l+ +la  +lgW+a+++++a+++l +++   +  ++++p+++  +p+++
  EHU01779.1 111 ALAVLIAFCSASQDIVFDAWKTDVLPPEERGSGAAITVLGYRLAMLISGGLALWLAdRYLGWEATYWLMALLLLPCLI---ATCLAKEPDNAQAAPRTL 206
                 ****************************************************************************88...777889999999999999 PP

       MFS_1 188 ekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllall 282
                      +a + p +  +++++  w+l++ ++l  +g +++ +l++++l    g++    gl+  +  l+lla ++  +al +g l++rl+  r+l++++l
  EHU01779.1 207 ----RQAVVDP-LHDFFNRNNAWLLITLIILYKLGDAFAASLTTTFLIRGVGFNpgdvGLVNKT--LGLLATII--GALYGGMLMQRLSLFRALMIFGL 296
                 ....7777777.***********8888888888899999999999*********9877755555..44444444..478******************** PP

       MFS_1 283 llllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslgga 350
                 l +++ +g+ llavt++ ++++++ v+i   ++g+ ++++ al++ l+ ++ ++t+++l + ++++g++
  EHU01779.1 297 LQAVSNFGYWLLAVTDKHLWSMASAVFIENlCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV 365
                 ***********************88888888*********************************99987 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.3e-06
       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                 +  l++g++++a +al+  + +k+  +  ++llsa +++G +   +++g+l++ +gW+  + +  +++l ++    ll +++ +   ++++ +      
  EHU01779.1 324 IENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPAAGYLVEIWGWPTFYAFTVFAGLPGLA---LLAFCRGTLDFTQKTGQF----L 415
                 6678999999***********************************************9888888888888755...555666666666666666....6 PP

       MFS_1 193 paplvpawkallkdpvl.....w..illialllfffgfsglltllplylqevlgls..gllla 246
                 p+  ++  ++ ++++ +     +  ++l++l+l+++g+ +l+++l  ++   + l+  g +l+
  EHU01779.1 416 PRRYFS-TGYRWTKRLFaggcgLlaLWLLSLALNATGMLTLSAWLAPLFEAGMALAlcG-VLS 476
                 666677.6999999977555541577999999999999999999998555555555555.222 PP

>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   4.8     2e-14   1.8e-10       4     170 ..      15     158 ..      12     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2e-14
       Acatn   4 lLvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilllvlglaiskglifegvd 102
                 +L++L +  G+P+ L+ gt+   +     ++  +++g+fsl+   y +k lWsP++D +    +Grrr W++ +ql+    ++      + g + ++  
  EHU01779.1  15 ILLLLGFASGLPLALTSGTLQAWMTV--DNIDLKTIGFFSLVGQAYVFKFLWSPMMDRFTPPLLGRRRGWLLITQLALVASIV------AMGFLQPSR- 104
                 688999*************9988765..99*****************************************999986443333......333333321. PP

       Acatn 103 dafhgeasekvlkvnilsLtlvflvLvllc.atqDiavDgWaltiLskkslsyastaqtvGlnlGyfls 170
                               ++ +L   ++vL+ +c a qDi  D+W  ++L ++  +  ++  ++G  l  ++s
  EHU01779.1 105 --------------DL-TLMAALAVLIAFCsASQDIVFDAWKTDVLPPEERGSGAAITVLGYRLAMLIS 158
                 ..............22.3444445555444378999999999999999888888888888877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3472.03
//
Query:       EHU01780.1  [L=308]
Description: cytochrome o ubiquinol oxidase subunit II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-17   61.1   0.1    2.7e-16   59.2   0.3    1.9  2  COX_ARM          COX Aromatic Rich Motif
    3.3e-07   30.2   0.0    7.7e-07   29.0   0.0    1.7  1  COX2             Cytochrome C oxidase subunit II, periplasmic
      0.004   17.3   1.7     0.0087   16.2   1.7    1.5  1  COX2_TM          Cytochrome C oxidase subunit II, transmembra
  ------ inclusion threshold ------
       0.03   14.5   0.1      0.068   13.3   0.1    1.6  1  DUF4079          Protein of unknown function (DUF4079)
      0.073   13.4   2.3       0.14   12.4   2.3    1.5  1  DUF996           Protein of unknown function (DUF996)
       0.13   12.4   0.0       0.35   11.0   0.0    1.7  1  Cupredoxin_1     Cupredoxin-like domain
       0.13   11.8   2.5       0.18   11.3   2.5    1.2  1  Sulf_transp      Sulphur transport
        1.5    8.5   7.2        6.4    6.5   7.0    1.9  2  Yip1             Yip1 domain


Domain annotation for each model (and alignments):
>> COX_ARM  COX Aromatic Rich Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3     3e+03      31      42 ..     199     210 ..     197     213 .. 0.80
   2 !   59.2   0.3   1.2e-19   2.7e-16       1      45 [.     239     284 ..     239     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
                 -TTHHHHHHHHT CS
     COX_ARM  31 dpgLFdsIvnky 42 
                 +pg Fd I + +
  EHU01780.1 199 EPGTFDGISANF 210
                 79****997776 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 1.2e-19
                 HC-S--B-SHH.HHHHCSS-SS--SEEES-B-TTHHHHHHHHTT-X CS
     COX_ARM   1 KaspktLdrde.YleLakPSennPVeyFssVdpgLFdsIvnkymep 45 
                 Ka p+tL +++ +++ a PSen+PVeyFss+ p+LF +++nk+m+ 
  EHU01780.1 239 KAAPNTLMTMDdFEKVAVPSENHPVEYFSSANPELFLQVINKFMNS 284
                 89*****99999********************************96 PP

>> COX2  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.4e-10   7.7e-07      42     114 ..     147     219 ..     121     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.4e-10
        COX2  42 levdnrvvlpvetkirllvtaedvlhsfavpslgvkvdavpGrlnqvsllidreGvfyGqcselcGvnhssmp 114
                 +++ n++  p +t++ + +t++ v+ sf +p+lg ++ a+ G  +++ l+++ +G+f G  +++ G   s m 
  EHU01780.1 147 IATVNQIAFPANTPVNFKITSNSVMNSFFIPTLGSQIYAMAGMQTKLHLIANEPGTFDGISANFSGRGFSGMK 219
                 567899******************************************************9999999888875 PP

>> COX2_TM  Cytochrome C oxidase subunit II, transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.7   3.9e-06    0.0087      33      85 ..      51     106 ..      31     109 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.9e-06
     COX2_TM  33 lililVlyilvlilvefrrrknkitaky...lvhgqeiE.iiWTiiPalililialp 85 
                 ++++++  +l+ +++ +++r++++ aky     h++++E ++WT iP li++++++ 
  EHU01780.1  51 MMIVVIPAVLMAVVFAWKYRASNTNAKYspnWSHSNKVEaVVWT-IPILIIVFLGIL 106
                 22333346778888888888888777763335899***956799.5******99875 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     3e-05     0.068       8      66 ..      50     108 ..      44     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
     DUF4079   8 lmvllvfpllgavaylGwqtrqrrlqskaerkekipkkvrdeHvklgslllllvvlgai 66 
                 lm+++v+p + ++++++w+ r++ ++ k + + + ++kv+   +++  l+++++ +++ 
  EHU01780.1  50 LMMIVVIPAVLMAVVFAWKYRASNTNAKYSPNWSHSNKVEAVVWTIPILIIVFLGILTW 108
                 6788888888888**********888886666666666666666666666666665555 PP

>> DUF996  Protein of unknown function (DUF996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.3   6.4e-05      0.14      61     128 ..      39     106 ..       9     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
      DUF996  61 pgleeaaslilllllvliiayvlliisavflkksyellgkrtgvklFetagllyfiGaiLtivlvGli 128
                 ++ + ++ +++l+++v+i a++++++ a+ ++ s  + + + + ++ +++  +++   iL+iv+ G++
  EHU01780.1  39 EQRSLILTAFGLMMIVVIPAVLMAVVFAWKYRASNTNAKYSPNWSHSNKVEAVVWTIPILIIVFLGIL 106
                 333333348889999999999999******************************************96 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016      0.35      17      89 ..     121     204 ..      97     210 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
  Cupredoxin_1  17 aaaektveitvkdg............gfePskievkagekvklkiknkdktp.eefesedlgeekvlapgktttitiaplkpGeYe 89 
                   a++ k vei v                 + ++i  +a+++v +ki+ +  ++  +f ++ lg +   + g +t++++ + +pG+++
    EHU01780.1 121 ASDVKPVEIDVVALdwkwlfiypeqgIATVNQIAFPANTPVNFKITSN--SVmNSFFIPTLGSQIYAMAGMQTKLHLIANEPGTFD 204
                   5555555555554455555555555567899********998888765..4448999***************************97 PP

>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   8.1e-05      0.18     111     201 ..      30     115 ..       9     202 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.1e-05
  Sulf_transp 111 wleqllestvskeslyetlglsplllialllliallllvkelrkeklqeaeklektslakklfrkpwslvlgavllgllavlawllsaktg 201
                  ++ + +++ ++ + + +++gl+++ ++++ +l+a+++++k ++ ++    +++ + ++ ++  ++++ + +  +++ +l++l+w  + ++ 
   EHU01780.1  30 LNPKGQIALEQRSLILTAFGLMMI-VVIPAVLMAVVFAWKYRASNT----NAKYSPNWSHSNKVEAVVWTIPILIIVFLGILTWKSTHALE 115
                  333344444455555666666554.445556665666554333332....33467899999999999999999***********8664433 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.0    0.0029       6.4      31      90 ..      12      71 ..       9     111 .. 0.76
   2 ?   -0.1   0.3       0.3   6.7e+02      24      38 ..      93     107 ..      77     156 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
        Yip1 31 lltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakl 90
                +l+l+ g+l+++  ++ l +++    l++ sl+ +++g+  +++++++l+a+++ +  ++
  EHU01780.1 12 ILSLIAGTLLMSGCDNALLNPKGQIALEQRSLILTAFGLMMIVVIPAVLMAVVFAWKYRA 71
                67777777777666666666655557789*************************994444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
        Yip1  24 lallllalltlllgl 38 
                 + +++l+++ l  ++
  EHU01780.1  93 WTIPILIIVFLGILT 107
                 223333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2053.87
//
Query:       EHU01781.1  [L=660]
Description: cytochrome o ubiquinol oxidase subunit I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-136  454.7  72.0     3e-136  454.7  72.0    2.3  3  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4      0.16   2.9e+03     270     290 ..      21      41 ..       7      50 .. 0.42
   2 !  454.7  72.0  1.7e-140    3e-136       1     430 [.      56     502 ..      56     504 .. 0.96
   3 ?    0.6   0.4     0.011     2e+02      78     101 ..     606     630 ..     584     649 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.16
                 HHHHHHHHTHHHHHHCCCHHH CS
        COX1 270 lgsvfslliavPsglkvfnwl 290
                 ++ ++ + +a+ s+++ f+ +
  EHU01781.1  21 VAGIIIAGLAIVSAITYFGKW 41 
                 222222233333333333333 PP

  == domain 2  score: 454.7 bits;  conditional E-value: 1.7e-140
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCT........-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHH CS
        COX1   1 kigllylilalvlllvggllgllirlqlafp........dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfwlvvlgvv 91 
                 k+g++y+i+a+v+ll g++ ++++r+q+++          +++y q++t+Hg++mif++a+pf++g++n++vpl++gard+afp+ln+lsfw++++gv+
  EHU01781.1  56 KLGIMYIIMAFVMLLRGFADAVMMRTQQVLAssgeagilPPHHYDQIFTAHGVIMIFFVAMPFVVGLMNIAVPLQIGARDVAFPFLNNLSFWFTAIGVI 154
                 579*************************7543444444457********************************************************** PP

                 HHHHHHH..CSS-STTTTTTTC.........SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHC CS
        COX1  92 llllsll..gaattgwteYapls........evdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalallll 180
                 l++lsl   + a+tgw +Y+pls        +vd+w+++l l++++++l++inf+vtilk+rapgm ++k+p+f+wa+l+t +li+ a+pvl+++l+ll
  EHU01781.1 155 LVNLSLGvgEFAQTGWLAYPPLSgaeyspgvGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMDLFKMPVFTWAALCTNVLIIAAFPVLTVTLALL 253
                 ******66445**************************************************************************************** PP

                 HHHHHCT.-SSSC...E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHH CS
        COX1 181 lldrslg.kffsp...gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfs 275
                 +ldr+l  +ff+    g+ +++ +l W++gHpeVyil+lp++g+++++ ++f++++lf+y+ +v+a+i+i++lsf+vw+HH+ft+g  + ++a++ +++
  EHU01781.1 254 TLDRYLDfHFFTNdmgGNMMMYVNLIWVWGHPEVYILVLPVFGVFSEVTATFSKKRLFGYTSLVWATIAITVLSFIVWLHHFFTMGAGANVNAFFGIMT 352
                 ***********77789*********************************************************************************** PP

                 HHTHHHHHHCCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSB--HHH CS
        COX1 276 lliavPsglkvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpkltgrmlser 374
                 ++ia+P+g+k+fnwl+t+++g+i+++++ml+++gf+v+f +gG+tGvlla+p +++v+hn+ + +aHfH v++g+vvf+++a+++y++pk +g +l+e+
  EHU01781.1 353 MIIAIPTGVKIFNWLFTMYQGRIQMHSAMLWTVGFLVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCMAGVTYWFPKAFGFTLNET 451
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHH CS
        COX1 375 laklhfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtigg 430
                 ++k +fw+++iG+++ f+p+++lG++gm+rr  +     +  p+++ l v++++g+
  EHU01781.1 452 WGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQ-----DIDPQFHSLLVVAAVGA 502
                 *********************************3.....34689**********97 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHH.CSS CS
        COX1  78 lnalsfwlvvlgvvllllsll.gaa 101
                 + +  +wl+ l+++++++s++ +++
  EHU01781.1 606 MIWHIWWLAGLTFLGMIVSWIvKSF 630
                 3444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4669.83
//
Query:       EHU01782.1  [L=203]
Description: cytochrome o ubiquinol oxidase subunit III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-16   60.6  15.4    2.8e-16   60.2  15.4    1.3  1  COX3      Cytochrome c oxidase subunit III


Domain annotation for each model (and alignments):
>> COX3  Cytochrome c oxidase subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2  15.4   1.5e-20   2.8e-16      65     257 ..      15     201 ..       1     202 [. 0.85

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.5e-20
                 T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGTSSSS-TT-----TTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH CS
        COX3  65 lGehtlavqkGlklGlilfiisevllflalfwaffhsalsPtvelGatwpPvGikavnPlevPllntiillssGvtvtyahhsliegnrkkalkglllt 163
                 +G+h    +k   +G+ ++++s+ ++f++lf ++  + ++   + G    P G + +  l   l++t++ll s +t   a  ++ + n+  ++  l lt
  EHU01782.1  15 HGHHDAGANK--VFGFWIYLMSDCIIFATLFATY--AVMVN-NTAG---GPAGKDIF-ELPFVLVETALLLLSSITYGMAVIAMNKENKGAVIGWLALT 104
                 4777776666..489****************998..33443.3444...58886544.3555589**********9999*99999999999999999** PP

                 HHHHHHHHHHHHHHHHH...-SS-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BSSB-HHHHHHHHHHHHHHHHHHHHHHHTTTTT CS
        COX3 164 illavlftllqaveyle...asftisdgvyGsvfylatGlhglhviigtillavallrllkyhltknhhlGfeaailywhfvdvvwlflyvsvywwg 257
                 +l+++ f+++  +e+++     f    + + s f+   G hglhv  g i +av +++++k  l+++  +   +  l+whf+dvvw+ ++ +vy  g
  EHU01782.1 105 FLFGAGFIGMEIYEFHHliaEGFGPNRSGFLSGFFTLVGTHGLHVTSGLIWMAVLMFQIAKRGLNATNRTRIMCLSLFWHFLDVVWICVFTVVYLMG 201
                 **************975332689***********************************************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1511.90
//
Query:       EHU01783.1  [L=109]
Description: cytochrome o ubiquinol oxidase subunit IV [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-19   68.1  11.8    8.5e-19   67.8  11.8    1.1  1  COX4_pro         Prokaryotic Cytochrome C oxidase subunit IV
    0.00028   20.5  10.6    0.00033   20.3  10.6    1.0  1  ABC2_membrane_5  ABC-2 family transporter protein
     0.0091   16.1   8.6      0.011   15.8   8.6    1.1  1  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
  ------ inclusion threshold ------
      0.061   13.5   1.4      0.067   13.4   0.3    1.7  2  ESSS             ESSS subunit of NADH:ubiquinone oxidoreducta
       0.13   12.0   8.3       0.14   11.9   8.3    1.0  1  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
       0.24   11.9   7.2        2.2    8.9   3.2    2.1  2  DUF1218          Protein of unknown function (DUF1218)
       0.31   10.5   0.1       0.31   10.5   0.1    2.4  3  MtrF             Tetrahydromethanopterin S-methyltransferase,
       0.34   10.2   7.3        0.4   10.0   7.3    1.3  1  DUF3810          Protein of unknown function (DUF3810)
       0.46    9.6   6.3       0.63    9.2   6.3    1.2  1  Herpes_LMP1      Herpesvirus latent membrane protein 1 (LMP1)
       0.49   10.6  14.9       0.22   11.7   5.8    2.1  2  DUF5518          Family of unknown function (DUF5518)
       0.82    9.1   6.6       0.96    8.9   6.6    1.2  1  DUF3112          Protein of unknown function (DUF3112)


Domain annotation for each model (and alignments):
>> COX4_pro  Prokaryotic Cytochrome C oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8  11.8   5.2e-22   8.5e-19       1      72 []      19      92 ..      19      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 5.2e-22
    COX4_pro  1 livfvlllilTaiefalviiklg.kllaiiiilvlalvKavlillyFMHLkeekk.glrllaliflvflilllv 72
                +i+f+l++ilTai+f++v  ++  + +++ ++lv+a+v+++++l+yF+HL+ ++  g++++a++f +++il++v
  EHU01783.1 19 MIGFILSIILTAIPFWMVMDGSAsHGTILGVVLVCAVVQVLVHLVYFLHLDSKSEgGWNMVAIVFSAIIILIVV 92
                59****************6555599999999999*******************88****************997 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  10.6     2e-07   0.00033     116     204 ..      14     106 ..       4     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2e-07
  ABC2_membrane_5 116 vllsiliglvialiflaivlPlyfkfgvekgrivliiiifgiifllvaifsl....sklelslidlsnyilliillviillliivSyfiSiki 204
                      +++s++ig+++++i++ai ++++   ++++g+i+ ++++++++ +lv+++ +    sk e  ++++  ++++ii+l++++ ++++++ + +++
       EHU01783.1  14 SVKSYMIGFILSIILTAIPFWMVMDGSASHGTILGVVLVCAVVQVLVHLVYFlhldSKSEGGWNMVAIVFSAIIILIVVVGSLWIMWNLNYNM 106
                      6899*********************************99999999999988844445557778888888999999999999999998877665 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   8.6   6.7e-06     0.011      31     114 ..      14     101 ..       6     108 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.7e-06
  Polysacc_synt_C  31 alkalvigalvklilnllliplfgivG.aaiatvlallvvavlnlyalrrllgikl....ellrrllkpllaalvmgivvylllllllg 114
                       +k+ +ig+++ +il+ +   ++ + G a+ +t+l+ ++v+++  ++++  + ++l    e   +++ ++++a+++ ivv++ l+++ +
       EHU01783.1  14 SVKSYMIGFILSIILTAIPF-WMVMDGsASHGTILGVVLVCAVVQVLVHLVYFLHLdsksEGGWNMVAIVFSAIIILIVVVGSLWIMWN 101
                      67888999999999887655.556889999**********9999777777777777657644555557777777777776644444444 PP

>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         2   3.3e+03      52      66 ..      15      29 ..       3      38 .. 0.66
   2 ?   13.4   0.3   4.1e-05     0.067      41      79 ..      67     107 ..      49     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2
        ESSS 52 eavfffgvsivlVlg 66
                 +++ +g++++++l 
  EHU01783.1 15 VKSYMIGFILSIILT 29
                466777777776665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.1e-05
        ESSS  41 dkd.pvedkenmeavfffgvsi.vlVlgsvfvaYlpdtsiq 79 
                 + d ++e  +nm a+ f +++i ++V+gs ++++  +++++
  EHU01783.1  67 HLDsKSEGGWNMVAIVFSAIIIlIVVVGSLWIMWNLNYNMM 107
                 566678889********999872567899999998888875 PP

>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   8.3   8.5e-05      0.14     117     200 ..      16      95 ..       6     109 .] 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.5e-05
  PhoLip_ATPase_C 117 lwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvaletktwtliliililgsillyflflllyss 200
                      +  + g++ s+i+  ++++++ d s s+g+  ++ l+ ++v + + lv  l++  ++k+   +++++i++s +++++++  + s
       EHU01783.1  16 KSYMIGFILSIILTAIPFWMVMDGSASHGTILGVVLVCAVVQVLVHLVYFLHL--DSKSEGGWNMVAIVFSAIIILIVV--VGS 95 
                      457889**************999888888888888888888888888888777..555444455555555533333332..111 PP

>> DUF1218  Protein of unknown function (DUF1218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.019        30      35      59 ..      18      42 ..       4      47 .. 0.84
   2 ?    8.9   3.2    0.0013       2.2       3      56 ..      51     101 ..      49     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.019
     DUF1218 35 avvlfvlswivfaiAvalllvGaav 59
                 ++ f+ls+i++ai +++++ G+a+
  EHU01783.1 18 YMIGFILSIILTAIPFWMVMDGSAS 42
                5788****************99886 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0013
     DUF1218   3 vllllaqiiasvasgclccrkekspssakrtlavvlfvlswivfaiAvalllvG 56 
                 +++++ q++++++        ++++++  +++a+v++ + +++++++ + +++ 
  EHU01783.1  51 LVCAVVQVLVHLVYFLH---LDSKSEGGWNMVAIVFSAIIILIVVVGSLWIMWN 101
                 67788899999964333...3344444489999999999999999999988885 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00019      0.31      44      62 .]      17      35 ..       8      35 .. 0.84
   2 ?    0.8   0.3       0.2   3.3e+02      42      56 ..      42      56 ..      37      62 .. 0.69
   3 ?   -3.9   1.7       5.9   9.6e+03      52      56 ..      86      90 ..      78      94 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
        MtrF 44 GfaiGfvlAllLvvlPvll 62
                  +iGf+l ++L  +P+++
  EHU01783.1 17 SYMIGFILSIILTAIPFWM 35
                569*************985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
        MtrF 42 ivGfaiGfvlAllLv 56
                  G ++G+vl+ + v
  EHU01783.1 42 SHGTILGVVLVCAVV 56
                567888888776655 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5.9
        MtrF 52 AllLv 56
                 ++L+
  EHU01783.1 86 IIILI 90
                22233 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   7.3   0.00025       0.4      27      86 ..      49     108 ..      17     109 .] 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
     DUF3810  27 llivllillvilylvlaiklkkrkkkkkrllkvllrvllvllvvyflftllwglnYyrep 86 
                 +++v++++ v++ lv+++ l ++ +   +++ ++ +++++l+vv+    ++w lnY+ +p
  EHU01783.1  49 VVLVCAVVQVLVHLVYFLHLDSKSEGGWNMVAIVFSAIIILIVVVGSLWIMWNLNYNMMP 108
                 5667777888888888888888888888999999999*******************9775 PP

>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.3   0.00038      0.63      18     100 ..      13     102 ..       6     107 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00038
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1  18 gpplssslglallllllallfwlyivmsdwtggallvlysfallliiiiliififrrd.......llcplgalcllllmitlllialwnl 100
                  g   s  +g+ l ++l a+ fw+ +  s   g  l v+   a++ +++ l+ f+           +++ + +  ++l+++   l  +wnl
   EHU01783.1  13 GSVKSYMIGFILSIILTAIPFWMVMDGSASHGTILGVVLVCAVVQVLVHLVYFLHLDSkseggwnMVAIVFSAIIILIVVVGSLWIMWNL 102
                  666778899999999*******99999999999999999999999999999888643211111112222222223333333344456776 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.8   0.00013      0.22       3      38 ..      17      56 ..      15      61 .. 0.83
   2 ?    6.3   8.1    0.0061       9.9      49     102 ..      40      92 ..      37     101 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
     DUF5518  3 aaliGavvaivlslllg....lllpsvgsllgllvgGlva 38
                  +iG++++i+l+++++      + s+g++lg+++ ++v+
  EHU01783.1 17 SYMIGFILSIILTAIPFwmvmDGSASHGTILGVVLVCAVV 56
                678**************87766778899999999999998 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0061
     DUF5518  49 gavaGalaGligaipvlvlllvlllglvaaigglagfvallvalllvvllllvv 102
                 +a +G++ G++ ++ v+ +l+ l+  ++ +   + g   ++++++ ++++l+vv
  EHU01783.1  40 SASHGTILGVVLVCAVVQVLVHLVY-FLHLDSKSEGGWNMVAIVFSAIIILIVV 92 
                 6889*****9999988555555554.3333333333333222222221111111 PP

>> DUF3112  Protein of unknown function (DUF3112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.6   0.00059      0.96       9      69 ..      33      98 ..      17     108 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00059
     DUF3112  9 fwvvmlllyl..vvig.vvvmtivasvvpylyfl..sekhyemckkvvkassvliilysllavali 69
                fw+vm    +   ++g v+v ++v  +v  +yfl  ++k+   ++ v+ + s +iil+++++ + i
  EHU01783.1 33 FWMVMDGSAShgTILGvVLVCAVVQVLVHLVYFLhlDSKSEGGWNMVAIVFSAIIILIVVVGSLWI 98
                777775443212455516678999999999**9733455555566666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1252  (0.069831); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 778.63
//
Query:       EHU01784.1  [L=295]
Description: protoheme IX farnesyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-58  197.6  23.8    2.4e-58  197.4  23.8    1.1  1  UbiA      UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4  23.8   1.4e-62   2.4e-58       2     250 ..      18     266 ..      17     269 .. 0.94

  Alignments for each domain:
  == domain 1  score: 197.4 bits;  conditional E-value: 1.4e-62
        UbiA   2 lipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllal 100
                 li+++ g++la++gs+d  l+l+ l+g+ l+ a+++++N+++Dr+iD +mert+nR lv+G+is k  l++a+vl+i+g++ll++++npl+++l+++++
  EHU01784.1  18 LISVIGGFLLASKGSIDYALFLTSLVGVSLVVASGCVFNNVIDRDIDIKMERTRNRVLVKGLISAKVSLVYATVLGIAGFALLYFGANPLAMWLAVMGF 116
                 689999********************************************************************************************* PP

        UbiA 101 lly.vvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllav 198
                 ++y  vY+ l++Kr++++gt++g+++++ pp++g++avt+++++ al+l++++ l+++++ +a ++ + +++++a+i+ lpvv G  +a++ ++l++++
  EHU01784.1 117 VVYvGVYS-LYMKRHSVYGTLIGSLSGAAPPVIGYCAVTNEFDAGALILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYILA 214
                 ********.9******************************************9**************************************64444444 PP

        UbiA 199 llla.llllllalllllylllalllaalallraarlvrrrdakkaakfflfls 250
                 +++a l+l+l ++ +  yl++a+++ +++l +a+  +++ +++ +a+++ f+ 
  EHU01784.1 215 FMIAtLMLTLGGYAGYKYLVVAAAVSVWWLGMALSGYKTSNDRVWARKL-FVF 266
                 44447888999999999*********************99999999988.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2003.41
//
Query:       EHU01785.1  [L=454]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-46  159.3  61.7    2.7e-39  135.1  39.7    2.0  2  MFS_1       Major Facilitator Superfamily
    7.3e-09   35.0  33.8    4.9e-08   32.3  15.1    2.7  2  Sugar_tr    Sugar (and other) transporter
    1.2e-07   30.9  27.9    1.3e-05   24.2  18.5    2.2  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.016   14.2  36.1       0.65    8.9  25.7    2.9  2  PUCC        PUCC protein
      0.029   13.7   4.0      0.046   13.1   0.4    3.1  2  MtrF        Tetrahydromethanopterin S-methyltransferase, F su
      0.095   12.7  14.1       0.43   10.6   2.3    3.2  3  DUF5391     Family of unknown function (DUF5391)
       0.41   10.4   5.4       0.39   10.5   0.5    2.4  2  DUF443      Protein of unknown function (DUF443)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1  39.7   1.1e-42   2.7e-39       4     346 ..      20     348 ..      17     349 .. 0.80
   2 !   38.2  14.0   3.1e-13     8e-10      62     180 ..     278     395 ..     275     427 .. 0.86

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 1.1e-42
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgag 100
                 ++ l +l++++++p+l+   +a + g+s++ igl++++y+l++a++++p+G lsdr+Gr+++++ glllf+lg+++++ +  s+w ++++r+lqG ga 
  EHU01785.1  20 VFSLRMLGMFMVLPVLTTyGMALQ-GASETLIGLAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLLLFVLGSVIAA-StESIWGIILGRALQGSGA- 115
                 5678999**********9888888.9***********************************************77777.4599*************95. PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp. 198
                  +++a++al++d++ +++r++a+++++++f++ +++++++g++++++lg +a+f+++a ++ l+++ + l+++ + +++  +++       +       
  EHU01785.1 116 -IAAAVMALLSDLTREQNRTKAMAFIGISFGVTFAIAMVVGPIVTHALGLHALFWMIATLATLGIL-ITLWVVPSSTQHVLNRESGM----V-----Rg 203
                 .**************************************************************988.34555555555555555444....2.....23 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglalla 295
                  +k++l++p l  l +++++ ++ +++ ++ lp    e+ gl+   ++ ++l+ +l+a++g++ +++ + + ++   ++r ++++++++++a ++++ a
  EHU01785.1 204 SFKKVLANPRLVKLNLGIFFLHILLMSSFVALPD-QFEQAGLPpsEHWKVYLTTMLIAFAGVVPFIIYAEVKRK---MKRVFVGCVGMMVIAEIVLWGA 298
                 4777999997742333333333344444455555.256666667733444444666666666667777777777...7789999999999999999999 PP

       MFS_1 296 vtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntags 346
                      +++l+ ++ l+ +++ ++ ++l +l+s+  p+ + gta+gl++t + 
  EHU01785.1 299 QG--HFWTLVlGVQLFFLAFNLMEAILPSLVSKESPAGYKGTAMGLYSTSQF 348
                 99..44444415555556******************************9875 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 3.1e-13
       MFS_1  62 rrvlllglllfalg.lllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyil 157
                 +rv++ ++ +++++ ++l+  a  ++w l+l + ++  ++  ++ ++  +l+++ +p   +g a+gl+s++  lG+++g  lgg++  ++  + vf++ 
  EHU01785.1 278 KRVFVGCVGMMVIAeIVLWG-AqGHFWtLVLGVQLFFLAF-NLMEAILPSLVSKESPAGYKGTAMGLYSTSQFLGVAIGGSLGGWVFGHFDAQTVFMVG 374
                 78************555555.4588996777777777666.7********************************************************* PP

       MFS_1 158 aivsllafvlfllllpeepperk 180
                 aiv++++  lf+   ++epp  +
  EHU01785.1 375 AIVAAIW--LFVSMTMQEPPYVS 395
                 *******..77788888888765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3  15.1   1.9e-11   4.9e-08      44     194 ..      46     189 ..      23     197 .. 0.88
   2 !    6.9  10.5   0.00098       2.5     280     435 ..     238     386 ..     214     393 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.9e-11
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s++l+gl  +i+ + ++i ++ +gll+dr+GRk+ ++ + +lfv g+v+ a ++   s++ +i+gR l G   G++ + v  ++s ++ ++ R +   +
  EHU01785.1  46 SETLIGLAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLLLFVLGSVIAASTE---SIWGIILGRALQG--SGAIAAAVMALLSDLTREQNRTKA--M 137
                 6789**********************************************9999...************8..6899999999***********764..5 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                    +i+fG  +a+ + +g   t++  g + l+++ + +a l +++  +++P S
  EHU01785.1 138 AFIGISFGVTFAIAMVVGPIVTHA-LGLHALFWMIATLATLGILITlWVVPSS 189
                 6789*************9999999.9************999877652667766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00098
                 HHHHSS-THH....HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHH CS
    Sugar_tr 280 ifenlglsks....llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvl 374
                  fe++gl +s    ++ t ++++   v+ f+    v+r  +R      ++g+  ++vi   ++l++ +++      ++ ++ lf+ +f+l  + +p ++
  EHU01785.1 238 QFEQAGLPPSehwkVYLTTMLIAFAGVVPFIIYAEVKRKMKR-----VFVGCVGMMVIA-EIVLWGAQGH---FWTLVLGVQLFFLAFNLMEAILPSLV 327
                 578888888866555555555555555555555555555444.....344445555555.4778899997...66677777888889999999999555 PP

                 HHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 375 vsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvff 435
                  s  +p + +++a+ +  ++++l   + + l  +++++   + + ++ ++++++  +fv +
  EHU01785.1 328 -SKESPAGYKGTAMGLYSTSQFLGVAIGGSLGGWVFGHFD-AQTVFMVGAIVAAIWLFVSM 386
                 .555799999999999999999999999999999999999.55555555555555555554 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   8.0   0.00022      0.57     253     370 ..      41     155 ..      11     169 .. 0.81
   2 !   24.2  18.5   5.2e-09   1.3e-05     161     384 ..     150     372 ..     139     373 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00022
  MFS_1_like 253 kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgq 351
                    gas+tl+G ++ +  +a+ ++ +    l +++G   l++ +ll+++l  ++ a++e+ w +++  +L+g   g++ aa++   s+++ ++ +++ +
  EHU01785.1  41 ALQGASETLIGLAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLLLFVLGSVIAASTESIWGIILGRALQGS--GAIAAAVMALLSDLTREQNRTKAM 137
                 4479*******************************************************************96..555579999999999999999998 PP

  MFS_1_like 352 gllsglyfglGralGsliG 370
                 +++ g++fg+  a+  ++G
  EHU01785.1 138 AFI-GISFGVTFAIAMVVG 155
                 865.455777666655555 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 5.2e-09
  MFS_1_like 161 fafitGilidhysvnllpysallyvlaallv....isllvvlilnetekesklkvtkslqvllnilknpevi.....ifllvalilgmswgiienFlfl 250
                 +a+++G +++h       ++al+ ++a l +    i+l+vv + ++   +++ +++  + +++++l np+++     if+l +l++  ++++ ++F + 
  EHU01785.1 150 IAMVVGPIVTHALG----LHALFWMIATLATlgilITLWVVPSSTQHVLNRESGMV--RGSFKKVLANPRLVklnlgIFFLHILLMSSFVALPDQFEQA 242
                 23445555555444....44566666655540000444444444444444555555..699999999998875555589999999999********999 PP

  MFS_1_like 251 YL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapkslea 348
                  L  +     +l  +l+a+  v   +++   +   +k+  v++ +++++ +i+  +l ++   +w +++   L  ++f l+ a++ + vsk  p ++++
  EHU01785.1 243 GLpPSEHWKVYLTTMLIAFAGVVPFIIYAEVK---RKMKRVFVGCVGMM-VIAEIVLWGAQGHFWTLVLGVQLFFLAFNLMEAILPSLVSKESPAGYKG 337
                 99666666677777777766665555555555...55555566666654.4567777888888888888888899************************ PP

  MFS_1_like 349 tgqgllsglyfglGralGsliGGllwdlksaiflFr 384
                 t +gl+s+  f lG a+G  +GG ++++++a+++F+
  EHU01785.1 338 TAMGLYSTSQF-LGVAIGGSLGGWVFGHFDAQTVFM 372
                 *******9988.***********************7 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.6   0.00027      0.69     306     347 ..      22      63 ..      13      71 .. 0.91
   2 ?    8.9  25.7   0.00025      0.65     102     392 ..     113     388 ..      62     396 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00027
        PUCC 306 gvlllGlasGlfavaaltlmldlaaeeraglalGaWGaaQai 347
                 ++ +lG++  l   ++ +++l+ a e  +gla+G++G+aQai
  EHU01785.1  22 SLRMLGMFMVLPVLTTYGMALQGASETLIGLAIGIYGLAQAI 63 
                 56789999999999***************************8 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00025
        PUCC 102 vslsqTallALladlaeeeerpkvvgllyvmlligivvsaivvgallkdytearLirvvqgvalitlvlnvlalWkievkskkkkeekeeeepslleaw 200
                  +++  a++ALl+dl++e++r+k+ + + + + +  +++ +v  ++++ +  + L +++++ a+  ++++   lW + + +++     ++e+  ++  +
  EHU01785.1 113 SGAIAAAVMALLSDLTREQNRTKAMAFIGISFGVTFAIAMVVGPIVTHALGLHALFWMIATLATLGILIT---LWVVPSSTQH---VLNRESGMVRGSF 205
                 45677899*****************999999999999988888888899999*******99999888765...7877663333...3577888899*** PP

        PUCC 201 lklvaekqalaflaflllgtlaffmqdviLEpYgGevlgLtvgeTTkLtalfalGtlvGlllaglvlsrglkkarlaslgvllgllsflllilaallen 299
                 +k++a+++ +++ + ++++ + + m   +  p   e  gL+ +e  k   +  l +++G++   +++   +k +  ++++  +g++ +  ++l +++++
  EHU01785.1 206 KKVLANPRLVKLNLGIFFLHI-LLMSSFVALPDQFEQAGLPPSEHWKVYLTTMLIAFAGVV--PFIIYAEVKRKMKRVFVGCVGMMVIAEIVLWGAQGH 301
                 *********999888888766.6788888889999999******98877777777777764..4555555655555566666677778889999***** PP

        PUCC 300 vallvagvlllGlasGlfavaaltlmldlaaeeraglalGaWGaaQaiaaglavllggalrdllkalaandaalayglVfaleavlliisilv 392
                  + lv+gv l+ la  l+ +   +l+ + ++++ +g+a+G++   Q +  ++++ lgg +      +   da + + +   + a+ l++s+ +
  EHU01785.1 302 FWTLVLGVQLFFLAFNLMEAILPSLVSKESPAGYKGTAMGLYSTSQFLGVAIGGSLGGWVFGH---F---DAQTVFMVGAIVAAIWLFVSMTM 388
                 ******************9999999****************9888877777777777765322...2...24455555556666666666665 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.47   1.2e+03      40      50 ..      47      57 ..      45      69 .. 0.73
   2 ?   13.1   0.4   1.8e-05     0.046      38      61 ..     135     158 ..     130     159 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.47
        MtrF 40 tgivGfaiGfv 50
                ++++G+aiG+ 
  EHU01785.1 47 ETLIGLAIGIY 57
                6789*****84 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.8e-05
        MtrF  38 satgivGfaiGfvlAllLvvlPvl 61 
                 +a++++G+  G+++A+++vv P++
  EHU01785.1 135 KAMAFIGISFGVTFAIAMVVGPIV 158
                 57899*****************75 PP

>> DUF5391  Family of unknown function (DUF5391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.3   0.00017      0.43      26      97 ..     120     191 ..     104     211 .. 0.79
   2 ?    8.0   1.7    0.0011       2.8      14      91 ..     216     295 ..     200     323 .. 0.79
   3 ?   -0.5   0.1      0.47   1.2e+03     117     132 ..     372     387 ..     362     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
     DUF5391  26 vvtslsPladtgpnanqfnslgmwksiGiillfylvplllyilgikalrfvmailcgvGllidlvllavvfl 97 
                 v++ ls l+   +++  +  +g+   +   +++ + p++ ++lg++al +++a l ++G+li l ++ +   
  EHU01785.1 120 VMALLSDLTREQNRTKAMAFIGISFGVTFAIAMVVGPIVTHALGLHALFWMIATLATLGILITLWVVPSSTQ 191
                 555667777766666667777777788888889999**************************9998876544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
     DUF5391  14 tllsavlfcsllvvtslsPladtgpnanqfnslgmwk...siGiillfylvplllyilgikalrfvmailcgvGllidlvl 91 
                  l   ++f  +l+++s+  l d  ++a    s + wk   +  +i +  +vp+++y+   + ++ v    +g+ ++ ++vl
  EHU01785.1 216 KLNLGIFFLHILLMSSFVALPDQFEQAGLPPS-EHWKvylTTMLIAFAGVVPFIIYAEVKRKMKRVFVGCVGMMVIAEIVL 295
                 5556799*******************876555.444411044444444689******999*****9999899988888876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.47
     DUF5391 117 iasiivnviWflvafr 132
                 ++  iv  iW++v++ 
  EHU01785.1 372 MVGAIVAAIWLFVSMT 387
                 6667888899988765 PP

>> DUF443  Protein of unknown function (DUF443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00015      0.39      57     160 ..     130     233 ..     121     243 .. 0.70
   2 ?    1.6   0.4     0.079     2e+02      96     162 ..     254     320 ..     245     327 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
      DUF443  57 kkakkksigllalGs..avllgnllrklidvfniqlsklvnliillivlllvlvlriyiskklkkklynevelekkskekiilipkslknfllllfayl 153
                 +++ +k++  +++ +  +++++ ++ +++   +    + + ++i+ +++l +l+   ++    ++ l++e  + + s +k++  p+ +k  l + f+ +
  EHU01785.1 130 EQNRTKAMAFIGISFgvTFAIAMVVGPIVT--HALGLHALFWMIATLATLGILITLWVVPSSTQHVLNRESGMVRGSFKKVLANPRLVKLNLGIFFLHI 226
                 344444444444444005555555555543..3334456777778888888887777788888999***99999*****************99999999 PP

      DUF443 154 fflglvi 160
                 ++++ ++
  EHU01785.1 227 LLMSSFV 233
                 8876544 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.079
      DUF443  96 liillivlllvlvlriy..iskklkkklynevelekkskekiilipkslknfllllfaylfflglvila 162
                 l ++li+++ v+ + iy  +++k+k+ +   v        +i+l   +  +  l+l + lffl++  + 
  EHU01785.1 254 LTTMLIAFAGVVPFIIYaeVKRKMKRVFVGCVG--MMVIAEIVLWGAQGHFWTLVLGVQLFFLAFNLME 320
                 445667777776555552256666655555554..6666778888877888888999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 3171.35
//
Query:       EHU01786.1  [L=163]
Description: putative nucleotide binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-66  221.5   4.0    6.7e-66  221.4   4.0    1.0  1  DUF520     Protein of unknown function (DUF520)
  ------ inclusion threshold ------
        0.1   13.1   2.4        2.3    8.8   0.3    2.2  2  Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DUF520  Protein of unknown function (DUF520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.4   4.0   7.4e-70   6.7e-66       1     161 []       2     162 ..       2     162 .. 1.00

  Alignments for each domain:
  == domain 1  score: 221.4 bits;  conditional E-value: 7.4e-70
      DUF520   1 psfDivsevdlqevknAvdqakkeistRfDfkgskaeielkekekeitltaesefklkqvkdilksklvkrgvdlkaldlgkvekasgkkvkqevklke 99 
                 psfDivsevd+qev+nAv++a++e+stRfDf++++a+ el+ek+++i++++es+f++kq++dil++k++krg++  al++ ++ ++sgk+++ ++k+k+
  EHU01786.1   2 PSFDIVSEVDMQEVRNAVENANRELSTRFDFRNVTASYELNEKNETIKVISESDFQVKQLVDILREKMLKRGIEGAALEVPEEIEHSGKSWSVDAKMKK 100
                 7************************************************************************************************** PP

      DUF520 100 gidkekakkivklikdsklkvqasiqgdevRvtgkkrDdLQaviallkkedldlplqftNfr 161
                 gi+++ akk+vklikdsklkvq++iqg+++Rvtgk+rDdLQ ++al+++ +l++p+qf+Nfr
  EHU01786.1 101 GIESDVAKKLVKLIKDSKLKVQTQIQGESLRVTGKSRDDLQGAMALVRNGNLGQPFQFKNFR 162
                 *************************************************************9 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   0.00025       2.3      14      72 ..      37      91 ..      31     100 .. 0.84
   2 ?    4.7   0.2    0.0051        45      33      71 ..      97     135 ..      93     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
                HHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox 14 lAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg 72
                +  +l+e +  ++v+  sd       +++ +il+ek+ k+gie    +++eeie+s++ 
  EHU01786.1 37 ASYELNEKNETIKVISESDFQV----KQLVDILREKMLKRGIEGAALEVPEEIEHSGKS 91
                5567888888889999999888....899*************************99986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0051
                 SSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  33 kllrllDeeaskilqeklekngievllntkveeiegsed 71 
                 k+ ++++ +++k l + +++ + +v ++ + e+++ +++
  EHU01786.1  97 KMKKGIESDVAKKLVKLIKDSKLKVQTQIQGESLRVTGK 135
                 5568899999****************9999999997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1258.79
//
Query:       EHU01787.1  [L=306]
Description: 2-dehydropantoate reductase, NADPH-specific [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-34  116.8   0.3      1e-33  116.2   0.3    1.3  1  ApbA_C          Ketopantoate reductase PanE/ApbA C terminal
      1e-20   73.9   0.3    2.7e-20   72.6   0.3    1.7  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0045   16.8   0.6        3.3    7.6   0.2    2.6  2  Rossmann-like   Rossmann-like domain
  ------ inclusion threshold ------
       0.13   11.8   0.1       0.25   10.9   0.1    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.23   10.8   1.2       0.39   10.0   0.5    1.7  2  ThiF            ThiF family
        1.4    8.6   4.5        2.5    7.8   0.5    2.1  2  TEX13           Testis-expressed sequence 13 protein family


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.3   3.4e-37     1e-33       1     125 []     168     289 ..     168     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 3.4e-37
      ApbA_C   1 dirlarweKllinaainpltalldckngellespelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDveagrktEidyinGa 99 
                 +ir+a w+Kl++n++inpl++++dc+ng+l+   + +a + +l++E++ v+e+eg+++  ++l+++v +v+e+taan+sSMlqD++ +r tEi+yi G+
  EHU01787.1 168 NIRAACWRKLAVNCVINPLSVVYDCQNGALR---QHQADIITLCDEISWVMEREGQSVASQSLQDQVLNVIETTAANTSSMLQDIRVQRLTEIEYITGF 263
                 79999*************************9...56678899*************9988888************************************* PP

      ApbA_C 100 vvklAeklgvetPvnellyellkale 125
                 ++++A+ +g+ +P n  ly+++k +e
  EHU01787.1 264 LLRRARTHGLVLPENTRLYDMIKRKE 289
                 **********************9886 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.3   8.9e-24   2.7e-20       1     151 [.       3     143 ..       3     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 8.9e-24
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvv 98 
                 i++lG+Ga+G+++   La+ g+dv  +lr +  +   + n   + ++ g +++r+  a ++     l++  l++vt+Ka q+  a++++++++ +n++v
  EHU01787.1   3 ITVLGCGALGQVWLTALAHCGHDVQGWLRVPqPYC--SAN---VIDPLGRVTNRTFIANDPL---FLAQSQLLLVTLKAPQVSTAVKNLESVMSENCPV 93 
                 89*****************************3333..222...2333355555555555555...88899***************************** PP

                 EEESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  99 lllqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigela 151
                 lll+NG+g++ el+     +++l g+tth a r+g   ++h + g ++ig+ +
  EHU01787.1  94 LLLHNGMGTLGELKGLT--QPLLRGITTHAAMRDG-TVIKHVATGVTHIGPGN 143
                 ****************9..99**************.99************965 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0019       5.6      12      91 ..       2      86 ..       1     104 [. 0.73
   2 !    7.6   0.2    0.0011       3.3      84     108 ..     113     135 ..     104     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0019
  Rossmann-like 12 svGiisaGrvGtalgaaleraghvvvgisaisa..asrerae..rrlPdvp.vlevedvaaraellllavPdaelpglvkglaat 91
                   ++ +++ G +G++  +al+  gh v+g   + +  +s +  +   r+ + + +++ +   a+++lll+++  ++++  vk+l + 
     EHU01787.1  2 KITVLGCGALGQVWLTALAHCGHDVQGWLRVPQpyCSANVIDplGRVTNRTfIANDPLFLAQSQLLLVTLKAPQVSTAVKNLESV 86
                   678999********************98776533377776552245665551445556678899999988888888888888665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
  Rossmann-like  84 lvkglaatgavraGtivahtsganG 108
                    l++g++++ a+r+Gt++ h+++  G
     EHU01787.1 113 LLRGITTHAAMRDGTVIKHVAT--G 135
                    789****************954..4 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   8.5e-05      0.25       1      27 [.       1      27 [.       1      29 [. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.5e-05
                    SEEEEE--STTHHHHHHHHHHCTSEEE CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevi 27
                    mki+v+G G +G v  ++la+ gh+v 
      EHU01787.1  1 MKITVLGCGALGQVWLTALAHCGHDVQ 27
                    8************************95 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.5   0.00013      0.39      20      41 ..       2      23 ..       1      26 [. 0.93
   2 ?   -1.6   0.0      0.46   1.4e+03     158     179 ..     188     208 ..     132     275 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
                EEEEE--SHHHHHHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsG 41
                k+ ++G+G+lG+  l++La +G
  EHU01787.1  2 KITVLGCGALGQVWLTALAHCG 23
                899****************999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.46
                 -ECTSS-TGGS.EECCCCEEHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 158 gcyeCldpsstedptekkvplc 179
                  +y+C +  + ++ + + + lc
  EHU01787.1 188 VVYDCQNG-ALRQHQADIITLC 208
                 33444442.2222222222222 PP

>> TEX13  Testis-expressed sequence 13 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.5   0.00083       2.5      35      70 ..     145     179 ..     142     186 .. 0.89
   2 ?    1.9   0.3     0.052   1.6e+02      80     121 ..     218     260 ..     213     288 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00083
       TEX13  35 lsrsWeevEdkLrailedsevpseakeacawsaLaL 70 
                  s+ W+ev d L++ l d + + +++ ac w  La 
  EHU01787.1 145 KSEHWSEVADVLHEALPDVAWHDNIRAAC-WRKLAV 179
                 6899*********************9998.999996 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.052
       TEX13  80 elqarrvqkLqdqv.eehksaaqaLaselkrlreqqemerkea 121
                 e q+   q Lqdqv +  +++a    s l+ +r q+ +e + +
  EHU01787.1 218 EGQSVASQSLQDQVlNVIETTAANTSSMLQDIRVQRLTEIEYI 260
                 5566777999999834568888888999999999887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2216.67
//
Query:       EHU01788.1  [L=199]
Description: ribosome-associated chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-46  155.7   0.0      1e-45  155.5   0.0    1.0  1  DJ-1_PfpI  DJ-1/PfpI family
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.32   10.5   0.0    1.5  1  GATase_3   CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   1.1e-49     1e-45       2     164 ..       6     172 ..       5     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.5 bits;  conditional E-value: 1.1e-49
                 EEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS...TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EE CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkragikvdvvsvd...keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklv 97 
                 +vlv+la+g e++E+++++d l r+gik++++sv+    +e+++srG+++ +d+ l +v++++yDa+vlpGG +g+e++r+++ +ve+v++f+ +g++v
  EHU01788.1   6 SVLVCLAHGSEETEAVTTLDLLVRGGIKTVTASVEsdgCREIVCSRGVRLLADVPLVEVADNAYDAIVLPGGLKGAETFRDSPLLVETVRQFHLSGRIV 104
                 8**********************************99999*********************************************************** PP

                 EEETTTH.HHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETT..EEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI  98 aaICagp.qlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgn..lvTsrgpgaaiefalelle 164
                 aaICa++ ++L+ +++++  ++T++p++k ++  + +k++++rvv+d +  l+Ts+gpg+a++fal+l++
  EHU01788.1 105 AAICAAAgTVLVPHNLFPVGNMTGFPGLKSTI--PEEKWMERRVVWDPRvnLLTSQGPGTAMDFALKLID 172
                 ********************************..*************8766****************985 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.6e-05      0.32      36      83 ..      64     109 ..      50     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.6e-05
    GATase_3  36 slgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCG 83 
                   ++ +d+++lpGg +   +  + ++  l e +++++ +g+ v +iC+
  EHU01788.1  64 VADNAYDAIVLPGGLKG--AETFRDSPLLVETVRQFHLSGRIVAAICA 109
                 344679********875..567888888*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1475.50
//
Query:       EHU01789.1  [L=482]
Description: sulfur transfer protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-77  257.1   0.0    1.6e-76  256.3   0.0    1.4  1  ThiI             Thiamine biosynthesis protein (ThiI)
    1.6e-23   83.4   0.8    1.6e-23   83.4   0.8    1.9  2  THUMP            THUMP domain
    0.00057   19.4   0.1       0.14   11.7   0.0    2.7  2  QueC             Queuosine biosynthesis protein QueC
     0.0077   16.7   0.2       0.15   12.6   0.1    2.8  2  Rhodanese        Rhodanese-like domain
  ------ inclusion threshold ------
      0.015   14.8   2.4       0.05   13.1   0.0    2.7  3  Diphthami_syn_2  Diphthamide synthase
      0.021   13.6   0.1      0.094   11.5   0.0    2.1  2  tRNA_Me_trans    tRNA methyl transferase
      0.078   13.0   0.6       0.97    9.5   0.0    2.3  2  B12-binding      B12 binding domain


Domain annotation for each model (and alignments):
>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.3   0.0   6.4e-80   1.6e-76       1     197 []     175     369 ..     175     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 256.3 bits;  conditional E-value: 6.4e-80
        ThiI   1 gtqgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiekveklaellaeyqtslevklvvvdfkevlkeilekvkekltivllkrkmlri 99 
                 gtq++vl+L+SgG+DS+V++y+l++RG rv+++++  ++g ++++i++++++++l+++++ s++v++v+++f++v+ eilek++++++ v+lkr+m+r+
  EHU01789.1 175 GTQEDVLSLISGGFDSGVSSYMLMRRGSRVHYCFF--NLGGAAHEIGVRQVAHYLWNRFGRSHRVRFVAINFEPVVGEILEKIDDGQMGVVLKRMMVRA 271
                 89*********************************..7************************************************************* PP

        ThiI 100 AekvaeeegakalvtGesLgqVaSqtleNlrvisavvnllilrPLigldKeeiiklAkeigtyeisiekedkCsvlakhPttkakleevekaeeklkl 197
                 A++vae++g++alvtGe++gqV+Sqtl+Nlr+i++++++lilrPLi+ dKe+iik+A+eigt++++ +++++C+v++k+Pt+ka++ ++e++e+++++
  EHU01789.1 272 ASMVAERYGVQALVTGEAVGQVSSQTLTNLRLIDNASDTLILRPLISHDKEHIIKVAREIGTEDFASTMPEYCGVISKSPTVKAVKGKIEAEESQFDF 369
                 *********************************************************************************************99876 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.8   6.2e-27   1.6e-23       2     141 ..      29     162 ..      28     165 .. 0.92
   2 ?   -2.2   0.1       1.6   4.1e+03      53      75 ..     375     395 ..     351     402 .. 0.61

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 6.2e-27
                 HHHHHHHHTT.H-SEEEEETTEEEEECTEEEEEETHHHHHHHHHTSTTECEEEEEEEEEESSHHHHHHHHHHHHHHHHHHCT-EEEEEEEESSSTSSSH CS
       THUMP   2 eieellkegkvnverveagkgrivvelkgekpeedeellkealekargiqrvipvcevceadledileaakeivkkkfeeeketFaVrvkrrgkhfeft 100
                 +i+++lk+   ++ +v++ +  i v++k e     ++++ + l +++gi++v+ v+e  ++d+ di+e + +  ++ +e++  tF+Vrvkrrgkh +f+
  EHU01789.1  29 NIRNVLKTVSDEIAVVRF-WDHIEVRCKDEA---MRQIIPDELMRIPGIHHVLAVEEREYTDIHDIFEQTLAQYRDSLENK--TFCVRVKRRGKH-SFS 120
                 677887777766666666.899999999886...999*****************************************998..************.*** PP

                 HHHHHHHHHHHHHCCTT.-EE-SSS-SEEEEEEEETTEEEEE CS
       THUMP 101 sreinrevGkaivektg.lkVdlenPdivvrveiikdkayis 141
                 s++++r+vG+ +++ +  ++V l++P+++v++e+ ++++ + 
  EHU01789.1 121 SQDVERYVGGGLNQHIAsATVQLKKPEVTVNLEVEENRLTLV 162
                 *************************************98875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                 EEEEEEEEESSHHHHHHHHHHHH CS
       THUMP  53 vipvcevceadledileaakeiv 75 
                 ++   e+++ d+ +i e ++e v
  EHU01789.1 375 MVA--EATNVDIREIAEQTQEEV 395
                 222..366666666666666655 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   5.3e-05      0.14       3      39 ..     181     218 ..     179     242 .. 0.84
   2 !    5.0   0.0     0.006        15     150     181 ..     308     340 ..     266     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
                 EEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T.TSH CS
        QueC   3 vvllSGGlDSttvlalakkegkevealtfdYgqr.hkk 39 
                 + l+SGG DS +  ++ +++g +v+   f+ g   h++
  EHU01789.1 181 LSLISGGFDSGVSSYMLMRRGSRVHYCFFNLGGAaHEI 218
                 789************************99998765555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.006
                 S--EEE-TTTT--HHHHHHHHHHTT.HHHHH-B CS
        QueC 150 kkieieaPlidlsKaeivklgkelg.vpleetl 181
                 ++  i  Pli  +K++i+k++ e+g  ++  t+
  EHU01789.1 308 SDTLILRPLISHDKEHIIKVAREIGtEDFASTM 340
                 4567899*****************954556665 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.35   9.1e+02      29      78 ..      69     117 ..      44     136 .. 0.62
   2 !   12.6   0.1   5.7e-05      0.15      46      98 ..     431     481 ..     399     481 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.35
   Rhodanese  29 hIpgAvnv.skdtlsrakkseapllelpeellelgidnkktvvvycdgggr 78 
                 +Ipg  +v + +  ++ +   + + ++++++++  + nk+ +v + + g++
  EHU01789.1  69 RIPGIHHVlAVEE-REYTDIHDIFEQTLAQYRD-SLENKTFCVRVKRRGKH 117
                 8999999943333.3333333333334444444.35677766666666655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.7e-05
   Rhodanese  46 kseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                     p+ +l +++ +l  d++kt  +ycd g  ++  a  l + G+knv+v++
  EHU01789.1 431 LKSMPFYKLSTQFGDL--DQNKTWLLYCDRGVMSKLQALYLHEQGFKNVKVYR 481
                 4556666777777777..***************6666666666***99**995 PP

>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.19   4.8e+02       4      26 ..     181     204 ..     179     209 .. 0.81
   2 ?   13.1   0.0     2e-05      0.05     108     182 ..     216     289 ..     210     303 .. 0.85
   3 ?   -3.8   0.2       2.9   7.5e+03      52      72 ..     375     394 ..     369     406 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.19
  Diphthami_syn_2   4 avlysGGkDsilaLykalke.sev 26 
                        l+sGG Ds ++ y  +++ s v
       EHU01789.1 181 LSLISGGFDSGVSSYMLMRRgSRV 204
                      679*********999999875555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2e-05
  Diphthami_syn_2 108 relGlksvaP.LWkkdpeelleeiveekfevivvavkaegldeslLGrridkklidelkklsekygidkagegGea 182
                      +e+G+++va  LW++  + +  ++v+ +fe + v+   e  d+  +G  +++ ++     ++e+yg++     Gea
       EHU01789.1 216 HEIGVRQVAHyLWNRFGRSHRVRFVAINFEPV-VGEILEKIDDGQMGVVLKRMMVRAASMVAERYGVQAL-VTGEA 289
                      699****99559******************75.566667788999**********************854.44554 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.9
  Diphthami_syn_2  52 llaesvGiplikletaGeeek 72 
                      ++ae+  +++ +   +  +e+
       EHU01789.1 375 MVAEATNVDIREIAEQT-QEE 394
                      56777777766554442.222 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.7e-05     0.094       2      34 ..     179     211 ..     178     229 .. 0.86
   2 ?   -1.6   0.0      0.34   8.7e+02      10      31 ..     459     480 ..     457     481 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.7e-05
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflkl 34 
                     v+ ++SgG DS v+ ++l ++g  v  +f++l
     EHU01789.1 179 DVLSLISGGFDSGVSSYMLMRRGSRVHYCFFNL 211
                    58899*********************9999876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.34
  tRNA_Me_trans  10 GVDSsvaaallkeqgyevigvf 31 
                    GV S + a+ l+eqg++ ++v+
     EHU01789.1 459 GVMSKLQALYLHEQGFKNVKVY 480
                    9999************999987 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00038      0.97       7      57 ..     210     265 ..     205     283 .. 0.83
   2 ?    1.1   0.1      0.15     4e+02      11      45 ..     378     412 ..     370     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00038
  B12-binding   7 tvggdlhplGlavlaaalrda...gfeVqllganven..edivaairaekpdvvgl 57 
                  ++gg +h++G++++a +l ++    ++V+++ +n+e+   +i+++i + +  vv+ 
   EHU01789.1 210 NLGGAAHEIGVRQVAHYLWNRfgrSHRVRFVAINFEPvvGEILEKIDDGQMGVVLK 265
                  678999************99332256*********************999999975 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
  B12-binding  11 dlhplGlavlaaalrdagfeVqllganvenediva 45 
                  ++ ++ ++ +a+  +++ +eV+ +g+  en+ +++
   EHU01789.1 378 EATNVDIREIAEQTQEEVVEVETVGLLNENDSVLD 412
                  6677888999*****************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3582.46
//
Query:       EHU01790.1  [L=80]
Description: exonuclease VII small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-21   73.7   0.9    1.1e-20   73.4   0.9    1.1  1  Exonuc_VII_S     Exonuclease VII small subunit
  ------ inclusion threshold ------
       0.08   11.9   0.2      0.095   11.6   0.2    1.0  1  Vps53_N          Vps53-like, N-terminal
      0.095   11.7   1.4       0.11   11.5   1.4    1.0  1  Activator_LAG-3  Transcriptional activator LAG-3
        0.1   12.4   0.4        3.1    7.7   0.0    2.0  2  sCache_2         Single Cache domain 2


Domain annotation for each model (and alignments):
>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.9   2.5e-24   1.1e-20       1      51 [.      11      61 ..      11      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.5e-24
  Exonuc_VII_S  1 FEealaeLeeIvekLEsgelsLeeslklyeeGvkLlkeCekkLdeaeqkve 51
                  FE++l++Le+Iv++LEsgel+Le++l+++e+Gv+L++  ++ L++aeq+v+
    EHU01790.1 11 FETSLQQLEQIVNRLESGELPLEDALNEFERGVQLARNGQQTLQQAEQRVR 61
                  9************************************************97 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.1e-05     0.095      17      72 ..      12      66 ..       8      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
     Vps53_N 17 eqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqk 72
                e+sl+++++++++l+     l+d +++ +r+    +++g++ l++a++ ++ l+++
  EHU01790.1 12 ETSLQQLEQIVNRLESGELPLEDALNEFERGVQ-LARNGQQTLQQAEQRVRILLSD 66
                79***************************9987.99************99988765 PP

>> Activator_LAG-3  Transcriptional activator LAG-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.4   2.4e-05      0.11     303     370 ..       1      67 [.       1      74 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Activator_LAG-3 303 lpssasqpaqnpqqiaqlaqqqnkmrllqqqeqelqrieqqrrqqimqqqqqqqqqehrrqqmllqqq 370
                      +p+ a qpa     ++ql+q  n++   +    e    e +r  q+ ++ qq  qq  +r ++ll ++
       EHU01790.1   1 MPKKAEQPASFETSLQQLEQIVNRLESGE-LPLEDALNEFERGVQLARNGQQTLQQAEQRVRILLSDD 67 
                      899********************987543.3344556788999********************99655 PP

>> sCache_2  Single Cache domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00068       3.1      12      50 ..      10      48 ..       2      50 .. 0.82
   2 ?    5.1   0.1    0.0043        19      25      47 ..      44      66 ..      39      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00068
    sCache_2 12 qvetaislieavykqvesgkiteeeaqeevkelvnglkf 50
                  et ++++e++  + esg++ +e+a  e++  v+  ++
  EHU01790.1 10 SFETSLQQLEQIVNRLESGELPLEDALNEFERGVQLARN 48
                56788999*******************999887776655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0043
    sCache_2 25 kqvesgkiteeeaqeevkelvng 47
                + +++g+ t+++a ++v++l+++
  EHU01790.1 44 QLARNGQQTLQQAEQRVRILLSD 66
                67899**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 633.85
//
Query:       EHU01791.1  [L=299]
Description: geranyltranstransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-55  187.3   0.2    3.1e-55  187.0   0.2    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   0.2   1.7e-59   3.1e-55       4     228 ..      32     260 ..      29     282 .. 0.90

  Alignments for each domain:
  == domain 1  score: 187.0 bits;  conditional E-value: 1.7e-59
                      HHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHH..HTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   4 leealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDi..mDdsetRRGqpcahrlvGnklAindgdfllaraf 95 
                      l +a++y    gGKr+Rp lv ++  +l+ +     ++ v a++ve++ha+sL+hDD+  mDd+ +RRGqp++h ++G+++Ai++gd+l+++af
       EHU01791.1  32 LVNAMQYGALLGGKRMRPFLVYAIGTMLNAN---KASLDVPAAAVECIHAYSLIHDDLpaMDDDALRRGQPTCHIKYGEDTAILAGDALQTLAF 122
                      5688999999*******************33...48899******************************************************* PP

                      HHHHHHH.....STT.HHHHHHHHHHHH..HHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTT.HHHHHHHHHHHHH CS
  polyprenyl_synt  96 ellaklf.....eks.lellelfsevll..qtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallag.asdeelealkdig 180
                       +la+        ++ l +l+ +++++    ++ Gq+ldl +e  ++++   l++ ++i+++KT++l++ +v+l+a +ag a +e+l  l++++
       EHU01791.1 123 SILADQPmpgvsAEYrLAMLSELARASGvaGMCGGQALDLAAE-GQSVD---LHQLEQIHRHKTGALIRSAVRLGAFAAGdAGREALPYLDRYA 212
                      ****988899876667888888888876569*********666.68888...99**************************6656899******* PP

                      HHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT- CS
  polyprenyl_synt 181 lelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelas 228
                        +GlaFQ+qDD+lD++gd++v+gK  g+D   gk t+p l  l++a 
       EHU01791.1 213 DAIGLAFQVQDDILDVTGDTAVIGKRQGADQDLGKSTYPSLMGLDNAR 260
                      *****************************************9999444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2559.70
//
Query:       EHU01792.1  [L=621]
Description: 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-115  384.1   0.0   8.6e-115  382.6   0.0    1.7  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    9.5e-37  126.4   0.0    1.6e-36  125.7   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    5.8e-27   94.0   0.0    1.1e-26   93.2   0.0    1.5  1  Transketolase_C  Transketolase, C-terminal domain
    4.8e-05   22.5   0.1    8.2e-05   21.7   0.1    1.3  1  E1_dh            Dehydrogenase E1 component
     0.0003   20.6   1.7    0.00055   19.8   0.1    2.1  2  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    0.00035   19.7   0.0     0.0054   15.7   0.1    2.5  3  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.6   0.0  2.9e-118  8.6e-115       2     273 .]      12     282 ..      11     282 .. 0.99
   2 ?   -2.2   0.1      0.63   1.9e+03      50      71 ..     388     410 ..     361     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 382.6 bits;  conditional E-value: 2.9e-118
  DXP_synthase_N   2 ekinspedlkklskeeleelaeelrefliesvsktggHlasnLgvveLtlalhyvfdtpkDklvwDvgHqaYvhKiltgRkdkfktlrqkgGlsg 96 
                      + ++ + l++l ke+l++l++elr++l++svs+++gH+as+LgvveLt+alhyv++tp D+lvwDvgHqaY+hKiltgR+d++ ++rqk+G++ 
      EHU01792.1  12 AQAETVQALRALPKEKLPALCNELRQYLLDSVSRSSGHFASGLGVVELTVALHYVYNTPFDHLVWDVGHQAYPHKILTGRRDRIGSIRQKNGVHP 106
                     6778899**************************************************************************************** PP

  DXP_synthase_N  97 fpkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskylsklls 191
                     fp r EseyD++++gHsstsisa+lG+a+a++ +g+ +++ ++iGDga+t+Gmafea+n++g++k ++lvilNdNemsis+nvGal++ l+++ls
      EHU01792.1 107 FPWRGESEYDVLSVGHSSTSISAGLGMAAAAEREGKGRRTACIIGDGAITAGMAFEAMNHAGDIKPDMLVILNDNEMSISENVGALNNRLAQILS 201
                     *********************************************************************************************** PP

  DXP_synthase_N 192 skayeklkkevkkllkkigkklaelakklkeslkellvpgtlfeelgfkYlGpidGhdleelikvleevkklkgpvllhvvt 273
                      k+y++l++ +k++l+ + ++++el+k+++e+lk+++vpgtlfeelgf+Y+Gp+dGhd+ +l+++l+++++lkgp++lh++t
      EHU01792.1 202 GKTYARLREGGKRVLTGL-PPIKELVKRTEEHLKGMVVPGTLFEELGFNYIGPVDGHDVLTLVNTLTNMRSLKGPQFLHIMT 282
                     ***************998.99***********************************************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.63
  DXP_synthase_N  50 tlalhyvf.dtpkDklvwDvgHq 71 
                      +a++  f +   D++++Dv+ q
      EHU01792.1 388 VVAIYSTFlQRAYDQVIHDVAIQ 410
                     5888888745678******9977 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.0   5.3e-40   1.6e-36       4     173 ..     320     479 ..     318     482 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 5.3e-40
                   EHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHH CS
  Transket_pyr   4 awrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsge 100
                   +++k++++ l e +++d ++++i+ ++++g++ v ++ ++++   +++d+ i+Eq++++fa+G+a+ g  +++v+a++++F++    +a++++++++
    EHU01792.1 320 SYSKIFGNWLCETAADDAKLMAITPAMREGSGMVGFSRKYPN---QYFDVAIAEQHAVTFAAGLAIGG--YKPVVAIYSTFLQ----RAYDQVIHDV 407
                   7899**************************************...***********************..9************....********** PP

                   HHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SS CS
  Transket_pyr 101 akgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpks 173
                   a +kl+v   ++r +i vg dG +hq+a+++a+lr+ip++ +++Psd+ e++++l++ ++++  +P ++r+p++
    EHU01792.1 408 AIQKLPVLfAIDRGGI-VGADGQTHQGAFDLAYLRCIPDMVIMTPSDEDECRQMLYTGYHYQ-AGPAAVRYPRG 479
                   ****************.*******************************************87.6********97 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   3.5e-30   1.1e-26       1     124 []     495     611 ..     495     611 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 3.5e-30
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      gk++++r g++++++++G+ ++ea  +ae+L+     a++vd+r+vkplD+++i e++++++ l+++ee+++ gG gs v+++++    ++l  
       EHU01792.1 495 GKGVVKRRGEKLAILNFGTLLPEASHVAEALN-----ATLVDMRFVKPLDEALITELAAQHESLITLEEGAIKGGAGSGVNEFVMA---KCLGI 580
                      899****************************5.....99***********************************************...99*** PP

                      EEEEEEE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdv.iepgsaeelekafgldaeki 124
                      pv+++g+pd+ i+pg++ee+ + + lda+ i
       EHU01792.1 581 PVLNIGLPDEfIPPGTQEEMRHDYHLDADGI 611
                      ***************************9987 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   2.8e-08   8.2e-05     104     166 ..     124     186 ..     108     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.8e-08
                 TTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETT CS
       E1_dh 104 gaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygis 166
                 ++  + + G+a aa  egk + ++++iGDgA   G ++ea+n a   k  ++ + + N+  is
  EHU01792.1 124 STSISAGLGMAAAAEREGKGRRTACIIGDGAITAGMAFEAMNHAGDIKPDMLVILNDNEMSIS 186
                 444455559999999*****************************9999999999998988887 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.8e-07   0.00055      29      84 ..     126     183 ..     103     193 .. 0.74
   2 ?   -1.5   0.1      0.67     2e+03      14      52 ..     356     391 ..     350     392 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.8e-07
                   -TTTHHHHHHHHHHHSTTSEEEEEEEHHH..HHHTGGGHHHHHHTT-SEEEEEEE-SB CS
  TPP_enzyme_C  29 tmGyglpaAiGaklakpdrevvaivGDGg..flmilqelatavrrnlpitvvvlnNeg 84 
                   ++  gl++A +a++  ++r+  +i+GDG+    m ++++ +a   + +++v++ +Ne+
    EHU01792.1 126 SISAGLGMAAAAEREGKGRRTACIIGDGAitAGMAFEAMNHAGDIKPDMLVILNDNEM 183
                   2223333444444433479*********9756788*********************86 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.67
                   TTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEE CS
  TPP_enzyme_C  14 kvkrprsyltsgglgtmGyglpaAiGaklakpdrevvai 52 
                   ++k p++y++ ++   + ++++a++++      ++vvai
    EHU01792.1 356 SRKYPNQYFDVAIAEQHAVTFAAGLAIGGY---KPVVAI 391
                   556699999966666666665555554433...477766 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.38   1.1e+03       6      39 ..      32      64 ..      30      71 .. 0.83
   2 !   15.7   0.1   1.8e-06    0.0054     146     191 ..     145     189 ..     120     198 .. 0.84
   3 ?    0.1   0.0       0.1     3e+02     203     260 ..     243     300 ..     240     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.38
                     HHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHH CS
  Transketolase_N  6 vnaiRvLavDavekaksGhPGaplgladiaevlf 39
                      n +R   +D+v++  sGh  + lg+++++ +l+
       EHU01792.1 32 CNELRQYLLDSVSR-SSGHFASGLGVVELTVALH 64
                     57788889999986.69**********9998885 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.8e-06
                      -EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEG CS
  Transketolase_N 146 ytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGet 191
                       t +i+gDg +  G++ ea++ ag +k + L++l  dn++si  ++
       EHU01792.1 145 RTACIIGDGAITAGMAFEAMNHAGDIKPDMLVILN-DNEMSISENV 189
                      6789************************9998875.5888887666 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.1
                      HHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTT.STTTTTSGGGTS CS
  Transketolase_N 203 feaygWhvievedgedveaikaaieeakaekdkPsliklrtviGyg.spakagtedvhG 260
                      fe  g++ i   dg+dv ++ + +++ ++  + P ++++ t  G g +pa+++  + h 
       EHU01792.1 243 FEELGFNYIGPVDGHDVLTLVNTLTNMRSL-KGPQFLHIMTKKGKGyAPAEQDPIAWHA 300
                      677888889999**************9998.67***********997788888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 5026.45
//
Query:       EHU01793.1  [L=99]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   40.4   0.0    5.4e-10   39.4   0.0    1.5  2  HTH_Tnp_1  Transposase
     0.0054   16.5   0.0     0.0072   16.1   0.0    1.2  1  HTH_23     Homeodomain-like domain
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.044   13.9   0.0    1.3  1  HTH_28     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0     9e-14   5.4e-10      21      64 ..       2      51 ..       1      63 [. 0.82
   2 ?   -2.5   0.0       1.1   6.6e+03      36      50 ..      83      97 ..      81      98 .. 0.65

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 9e-14
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae......feltale 64
                +pg+sv+++Ar+ ++++n L++Wrr y+++++ +pa+       +l+a e
  EHU01793.1  2 QPGVSVAQLARENNINDNLLFNWRRRYQQELSGTPAStpalipVTLAATE 51
                89***********************************7777743333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
   HTH_Tnp_1 36 spnqLykWrrqyreg 50
                 p+ L + +r+ ++g
  EHU01793.1 83 TPELLQTLIREMQGG 97
                567777777777655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0072      17      43 ..       4      31 ..       1      39 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryr.e 43
                G sv++ Are +++ + + +w++ry+ e
  EHU01793.1  4 GVSVAQLARENNINDNLLFNWRRRYQqE 31
                89***********************523 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.3e-06     0.044      12      39 ..       4      31 ..       1      33 [. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.3e-06
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeeg 39
                G+sv+++Are +i+   +  W++ry+++
  EHU01793.1  4 GVSVAQLARENNINDNLLFNWRRRYQQE 31
                89***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 821.21
//
Query:       EHU01794.1  [L=50]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-12   44.9   0.0    9.4e-12   44.7   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   5.2e-16   9.4e-12      59     100 ..       1      41 [.       1      42 [. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.2e-16
   TnpB_IS66  59 llykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 +++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01794.1   1 MFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 41 
                 689***********7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 470.44
//
Query:       EHU01795.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-98  329.0   3.0    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    5.5e-18   64.9   0.1    2.2e-17   63.0   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    6.8e-11   42.8   8.3    1.5e-10   41.7   8.3    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.034   12.7   6.7      0.054   12.0   6.7    1.3  1  FUSC             Fusaric acid resistance protein family
      0.039   13.5   2.2      0.047   13.3   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.056   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.55   10.4   2.4       0.92    9.7   0.2    2.3  2  Zn-ribbon_8      Zinc ribbon domain
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        3.6    7.1   8.3        7.8    6.0   8.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        7.1    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.5      0.11        91     167     214 ..      34      82 ..      21     121 .. 0.49
   2 !  326.1   0.0  2.3e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU01795.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.3e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01795.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01795.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01795.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   2.7e-20   2.2e-17       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.7e-20
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL +++d +p+++l++LLPW
      EHU01795.1 479 SLIGTCRLNGVEPEAWLRYVLGHIQD-WPVNRLHDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01795.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   8.3   1.8e-13   1.5e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.8e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LP+e+
   EHU01795.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPHET 121
                  79*****************966655666666666777888888888888999999******************996 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01795.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01795.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01795.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01795.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.7   6.7e-05     0.054     213     294 ..       4      89 ..       1     124 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU01795.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.7   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01795.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01795.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01795.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01795.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00041      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.22   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01795.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.22
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01795.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01795.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01795.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01795.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01795.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01795.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01795.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01795.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01795.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2    0.0011      0.92      23      36 ..     125     138 ..     118     141 .. 0.79
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  23 dapltaCPeCgsev 36 
                   +++t+CP+Cg+e+
   EHU01795.1 125 SPAETTCPACGGEL 138
                  467899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01795.1 167 ACCSCDHI 174
                  35555554 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01795.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01795.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.3    0.0095       7.8      70     152 ..      13      97 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0095
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01795.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01795.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01795.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1469  (0.0819343); expected 358.6 (0.02)
Passed bias filter:                     1047  (0.058397); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 3970.65
//
Query:       EHU01796.1  [L=165]
Description: phosphatidylglycerophosphatase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-54  182.9   7.0    3.9e-54  182.6   7.0    1.0  1  PgpA      Phosphatidylglycerophosphatase A


Domain annotation for each model (and alignments):
>> PgpA  Phosphatidylglycerophosphatase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   7.0   2.2e-58   3.9e-54       2     140 ..      19     157 ..      18     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 2.2e-58
                 HHHHHHHHTT......--HHHHHHHHHHHTT.HHHHH.HHHHHHHHHHHHHHHHHHHHHT-S-HHT-TT--HHHHTTHHHHH........TT.HHHHHH CS
        PgpA   2 ellatlfgsGllpvaPgtvgslaalllalllllleslslllllilllflvGiwackktekelgekDpgeiviDEvvgqwiallllpatllal.llafil 99 
                 +llat+fgsGl+pv+Pgtvgslaa+++++ll+ll +  +  l++ll + vG+++c++t+k++g++D+g+iv+DE++g+wi+l+++p++++ + +++f+l
  EHU01796.1  19 HLLATGFGSGLSPVMPGTVGSLAAIPFWCLLTLLPHDLYS-LVVLLGISVGVYLCHRTAKDMGVHDHGSIVWDEFIGMWITLMAIPVNSWQWvVAGFVL 116
                 89**************************999876666444.599******************************************9666553888*** PP

                 HHHHHHS--THHHHTSSS.-S---TTHHHHHHHHHHHHHHH CS
        PgpA 100 FrlfDivKpgpigwldrklkgglgvmlDDllAgiaaalvla 140
                 Fr++Di+Kp+pi+w+dr+++gg+g+m+DD++Agi+aa++l+
  EHU01796.1 117 FRVLDIWKPWPIRWFDRNVHGGMGIMVDDIIAGIIAAAILY 157
                 *************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1290.17
//
Query:       EHU01797.1  [L=325]
Description: thiamin-monophosphate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-21   75.9   0.0    5.8e-21   75.0   0.0    1.5  1  AIRS      AIR synthase related protein, N-terminal domain
      3e-10   40.5   0.0    4.2e-10   40.0   0.0    1.2  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   6.5e-25   5.8e-21       1      93 [.      29     137 ..      29     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 6.5e-25
                 SSSE.........EEEEEEEEE.EECCTCCCC........HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEE CS
        AIRS   1 dDaa.........vvvttdshnrpvlvepvhf........iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGd 77 
                 dD+a         ++v+td     +lv+++hf        +++k++avnlsDlaamGA+P +l+l+l+lp     wl+ + ++l + +e ++++lvgGd
  EHU01797.1  29 DDCAllsvpekqtLAVSTD-----TLVSGIHFlptihpadLAYKSLAVNLSDLAAMGADPAWLTLALTLPdvnesWLSSFSESLFDLLEYYDMQLVGGD 122
                 8***6665555555*****.....*************************************************************************** PP

                 EEEESSEEEEEEEEEE CS
        AIRS  78 tsfsneptisvtavGl 93 
                 t++++ +++++++ Gl
  EHU01797.1 123 TTRGP-LSLTLGIHGL 137
                 ***99.8999999987 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   4.7e-14   4.2e-10       1     148 [.     150     299 ..     150     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.7e-14
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH...HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHH CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal...kglvkaahDvTgGGLlgalaemapasgvgaeidldkvpi 96 
                 kpGd +++tg+lG  +ag++l +++ + ++      +   ++l +++++ +++  +    + l+++a D+++ GL++++  +++asg+ga+i+ld++p+
  EHU01797.1 150 KPGDWIYVTGTLGDSAAGLALLQHHCRIDD------PAIHEALIKRHLRPMPRVLQGqslRSLASSAIDISD-GLISDIGHVLKASGCGARINLDALPL 241
                 79****************999998888887......4677888888888888887777999***********.8*********************9998 PP

                 HHHHHHHHHHHHC.......STTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEES CS
      AIRS_C  97 fdelesplemlls.......ensGrllvavppeeadavlaileeeglpeaavIGevtak 148
                    l++ +++  +        +   l+++vp+ ++ a+  +l+  g+p ++ IG++ ++
  EHU01797.1 242 SPALRDNFDASQVlrwalsgGEDYELCFSVPEVNRGALDVALGHLGVP-YTCIGQMAPE 299
                 888884444444444466665556677777777776666666777775.8888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2687.11
//
Query:       EHU01798.1  [L=139]
Description: transcription antitermination protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-35  119.9   0.1      1e-34  119.6   0.1    1.0  1  NusB      NusB family


Domain annotation for each model (and alignments):
>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.1   5.7e-39     1e-34       1     131 [.       7     129 ..       7     131 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 5.7e-39
                 HHHHHHHHHHHHHHHHH-S-.HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS- CS
        NusB   1 skaRelalqalyqveinked.eeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellyld 98 
                 ++aRe+a+qaly+++++++d ++++ ++l e+          ++ d  +++el+ gv +n  +lD l++ +l +++le+l++v++aiLr+++yel  ++
  EHU01798.1   7 RRARECAVQALYSWQLSNNDiADVEYQFLAEQDV--------KDVDITYFRELLAGVATNSAYLDGLMQPYL-SRQLEELGQVEKAILRVSLYELSKRS 96 
                 589***********77777765555555555555........99**************************99.************************** PP

                 SSHHHHHHH.HHHHHHHHS-HHHHHHHHHHHHH CS
        NusB  99 dvPakvaineavelakkygdeksakFvNgVLrk 131
                 dvP+kvaine +elak +g e+s+kFvNgVL+k
  EHU01798.1  97 DVPYKVAINEGIELAKVFGAEDSHKFVNGVLDK 129
                 *******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1234.50
//
Query:       EHU01799.1  [L=156]
Description: riboflavin synthase beta chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-58  194.7   1.4    6.9e-58  194.5   1.4    1.0  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.5   1.4   3.9e-62   6.9e-58       2     140 ..      13     151 ..      12     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.5 bits;  conditional E-value: 3.9e-62
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCT.TSSCCEEEEEESSCCCHHHHHHHHCTSTT-.SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHH CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeag.vaeenidvvtVPGafElplaakklaesskyldavialGvvirGetphfeyvaeavskglmrvsld 96 
                    ++iaiV arfn++i ++ll+ga+d+lk+ g v+++ni+vv+VPGa+Elplaa+ la+++k+ davialG+virG+t hfeyva ++s+g+++v++d
     EHU01799.1  13 AKIAIVIARFNNFINESLLDGAVDALKRIGqVNDDNITVVWVPGAYELPLAARALAKTGKH-DAVIALGTVIRGGTAHFEYVAGEASSGIASVAMD 107
                    69****************************999************************8878.********************************** PP

                    CTS-EEEEEEEESSHHCCHHCCTSTCCCHHHHHHHHHHHHHHHH CS
  DMRL_synthase  97 tgvPvifgvltvdteeqaleraggkagnkGeeaaeaalemanll 140
                    +++Pv+fgvlt++++eqa+erag+kagnkG+eaa +alem+n+l
     EHU01799.1 108 SDIPVAFGVLTTENIEQAIERAGTKAGNKGAEAALTALEMINVL 151
                    *****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1262.44
//
Query:       EHU01800.1  [L=367]
Description: diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-57  192.4   0.5    7.3e-57  192.4   0.5    1.5  2  RibD_C           RibD C-terminal domain
    1.2e-22   79.7   0.1    1.9e-22   79.1   0.1    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    1.4e-12   47.5   0.0    2.2e-12   46.9   0.0    1.3  1  MafB19-deam      MafB19-like deaminase
    0.00048   20.0   0.0    0.00089   19.1   0.0    1.5  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.52   10.2   0.1    1.9  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         2   7.1e+03      24      44 ..      36      56 ..      34      67 .. 0.76
   2 !  192.4   0.5     2e-60   7.3e-57       1     197 [.     147     359 ..     147     362 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                TSS-HHHHHHHHHHHHTSSEE CS
      RibD_C 24 witgeearadvhelraeadai 44
                +i+ge+++++++e  ae++a+
  EHU01800.1 36 DIVGEGWHQRAGEPHAEVHAL 56
                478888888888888888886 PP

  == domain 2  score: 192.4 bits;  conditional E-value: 2e-60
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHH.HTT.G....SS-EEEEEETTS-S-TTSHH CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreae.adaea....rqpvrvVvdstlrvpldakv 94 
                 p+++lkl +SlDG++a+a+ges+wit+++ar+dv++lra++ ail ++ tvlad+psltvrw++ +             rqpvrv+vds++rv++++k+
  EHU01800.1 147 PWIQLKLGASLDGRTAMASGESQWITSPAARRDVQRLRAQSAAILSSSATVLADDPSLTVRWAELDSDSqRLI-DaqtlRQPVRVIVDSQNRVTPQHKL 244
                 89*************************************************************9886553332.2367********************9 PP

                 HHSSS-EEEEESSCSCHHHHHHCC...E.....SE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SS.. CS
      RibD_C  95 ltddaptlvatteeadkekveklk...v.....rvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfka.. 183
                 + +  +t++++++++ +++ + ++   v     ++dl++l+  L +r+i+s++ve+GatLag+ll+aglvDel++y+aPkllG++++ l++ +g+++  
  EHU01800.1 245 IEQLGETWLMRQQADTQRWPDSVTqipVplrdsQLDLVALMIVLGQRQINSVWVEAGATLAGALLQAGLVDELIVYVAPKLLGNDARGLCQLTGLTQla 343
                 9977*******************9866488999**************************************************************9866 PP

                 ..EEEEEEEEEEETTE CS
      RibD_C 184 ..lklklvksealgeg 197
                   + + +  ++++g++
  EHU01800.1 344 daPVFAFSDVRQVGSD 359
                 6666666666666655 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   5.2e-26   1.9e-22       4     100 ..       3      99 ..       1     100 [. 0.93

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 5.2e-26
                      HHHHHHHHHHHHHHHH..TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHH......HHHHH CS
  dCMP_cyt_deam_1   4 dekllelalkaakeaq..kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsm......Cakai 89 
                      de+++  al++a++ +  + +n++VG+viv++g i+++g+++++ g    +HAEv A++ a+     + +gat yvtlePCs+      C++a+
       EHU01800.1   3 DERYMARALELARRGRftTMPNPNVGCVIVRDGDIVGEGWHQRA-GE---PHAEVHALRMAGA----RARGATAYVTLEPCSHhgrtppCCDAL 88 
                      89***************9*************************6.55...5**********85....5679***********99********** PP

                      HHHT-SEEEEE CS
  dCMP_cyt_deam_1  90 iqsgikkvvvg 100
                      i++g+k+vv +
       EHU01800.1  89 IEAGVKRVVAA 99 
                      *********87 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   6.2e-16   2.2e-12       2     138 .]       2     143 ..       1     143 [. 0.82

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 6.2e-16
  MafB19-deam   2 dkekafrkalaeveka..tkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCd......mCagaivq 91 
                  ++e++++ al++++ +  t + +  +g+viv d+ +++ g      +     HaE++al+ A     + r+ +at yvtlepC+      +C  a+++
   EHU01800.1   2 TDERYMARALELARRGrfTTMPNPNVGCVIVRDGDIVGEGWH----QRAGEPHAEVHALRMA-----GARARGATAYVTLEPCShhgrtpPCCDALIE 90 
                  7889999999888876336777889****************9....555889*********9.....77789***********6444444799***** PP

  MafB19-deam  92 aglkklvygagnpks......lnkLkvkekngrvelveddckeilkgffkklr 138
                  ag+k++v ++++p+       l +L+   +     l+ ++ +++ +gf+k++r
   EHU01800.1  91 AGVKRVVAAMQDPNPqvagrgLHRLQQAGIEVSHGLMMQEAEALNRGFLKRMR 143
                  ***********999888999999998877777766676677777777777765 PP

>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.5e-07   0.00089      52     122 ..      64     130 ..      32     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.5e-07
     Inv-AAD  52 kntvlYttmepCskRlsGnlpCveRilklkeaiktvyvGvkePekfvaenkgrkkleeagievvhvegled 122
                 + +  Y t+epCs+      pC++ +++    +k+v   +++P+  va  +g ++l++agiev h   +++
  EHU01800.1  64 RGATAYVTLEPCSHHG-RTPPCCDALIEA--GVKRVVAAMQDPNPQVA-GRGLHRLQQAGIEVSHGLMMQE 130
                 55678*******9863.3568***99875..799***********997.58************99877765 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00014      0.52      44      95 ..      48      91 ..      24     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
                .SSTBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH......HHHHHHHH CS
    APOBEC_N 44 aaaskHaEelflediedqelrepkkkyeitlYvswsPChessde..Caeklaaf 95
                     HaE   l+           +++  t Yv++ PC ++  +  C+++l ++
  EHU01800.1 48 E---PHAEVHALRM-------AGARARGATAYVTLEPCSHHGRTppCCDALIEA 91
                3...6777776663.......12567889***********88889*66555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2716.76
//
Query:       EHU01801.1  [L=149]
Description: DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-15   55.8   0.1    7.9e-15   55.2   0.1    1.3  1  ATP-cone  ATP cone domain


Domain annotation for each model (and alignments):
>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   4.4e-19   7.9e-15       2      85 ..      50     136 ..      49     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 4.4e-19
                 EEE-TTS-EEE--HHHHHHHHHHHHHH...-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH CS
    ATP-cone   2 kViKRdGtvepfdvekIkraiekAceg...seeeideiaeeveaevrkrlrdgisteeIqdlvektliehpdyavaaayilyrnlrk 85 
                 +V+K +  +epf+++k+++  +kA+e+   s + ++  ++ +  ++r  ++++i+++ I++lv+++l++ +++a+++++++yr + +
  EHU01801.1  50 RVVKSNDVREPFNEDKLASGMMKALEKrpvSADAVESAVSHIKTQLRATGEREIPSKLIGNLVMDELKKLDKVAYIRFASVYRSFED 136
                 69*************************88777778888888899999999999******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1152.44
//
Query:       EHU01802.1  [L=54]
Description: hypothetical protein CKS_0248 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.4   0.0       0.24   11.2   0.0    1.1  1  MalM      Maltose operon periplasmic protein precursor (MalM)


Domain annotation for each model (and alignments):
>> MalM  Maltose operon periplasmic protein precursor (MalM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.3e-05      0.24      95     125 ..       2      32 ..       1      35 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.3e-05
        MalM  95 kstklehpakayakalgnavpeikdpvakhs 125
                 k++ + hpa a a+  g+avp i + va+ s
  EHU01802.1   2 KQVDIGHPASAVAQVSGDAVPRIGTNVATFS 32 
                 688999*******************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      149  (0.00831056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 475.14
//
Query:       EHU01803.1  [L=182]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-50  171.1   3.8    1.8e-50  170.8   3.7    1.0  1  DUF3251    Protein of unknown function (DUF3251)
  ------ inclusion threshold ------
      0.016   15.6   4.5      0.083   13.3   3.8    2.1  2  LPP        Lipoprotein leucine-zipper
      0.033   14.2   0.1      0.061   13.3   0.1    1.4  1  DASH_Dad4  DASH complex subunit Dad4
      0.067   13.2   6.5       0.11   12.6   6.5    1.3  1  T2SSM      Type II secretion system (T2SS), protein M
      0.089   13.2   0.6         19    5.7   0.2    2.2  2  CLZ        C-terminal leucine zipper domain of cyclic nucleot
       0.13   12.4   0.2       0.22   11.6   0.2    1.3  1  bZIP_1     bZIP transcription factor
       0.17   12.3   3.2       0.54   10.8   2.0    2.0  2  NPV_P10    Nucleopolyhedrovirus P10 protein
        1.2    8.4   5.0        1.7    7.9   5.0    1.2  1  DUF4763    Domain of unknown function (DUF4763)
        1.3    9.4   7.5        2.6    8.4   7.4    1.5  1  YlqD       YlqD protein


Domain annotation for each model (and alignments):
>> DUF3251  Protein of unknown function (DUF3251)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   3.7   9.1e-54   1.8e-50       4     157 ..      24     177 ..      21     182 .] 0.97

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 9.1e-54
                 --------S-------------HHHHHHHHHHHHHHH-SSSEEE-TTT---EEEE-SS-EEEEEEEEEEE-SSSEEEEEEEEESSSS----EEEEEEEE CS
     DUF3251   4 qselrqlkqsvsklnqelktleqetvkieqqnaLnakskkgvyLlPgaktparlesqiGrlrvslaniepeadGtrvvLriqgesadrLpafkakvewG 102
                 q +++ql+++vs+lnq++++l+ ++ ++e q +Lna+s++g  LlP+a+tp  l++q+G+lr+sla ie+ea Gt++ L+++++++ +Lp+++a+v wG
  EHU01803.1  24 QPQVKQLHREVSQLNQQMQQLTSQASAVEIQGQLNAHSQQGAWLLPQANTPVALQTQVGTLRLSLARIEAEAGGTHADLTLRTQDNSPLPGMHATVVWG 122
                 789************************************************************************************************ PP

                 EE-S-SSS--EEEEEEEEEEE----SSS-EEEEEEEE-S--GGG--EEEEEEEEE CS
     DUF3251 103 qldgttekyqevnvqsqlfsapasllapsdvqielrLkgvspeqlGfvRvhdiqe 157
                 qld+ t k+ e +  +q++s+pasl + s v+++lrLk v+peqlG+vR+h++  
  EHU01803.1 123 QLDPATGKPIEADSLTQTLSVPASLTPRSSVTVPLRLKDVTPEQLGYVRIHQVIA 177
                 ****************************************************855 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.8   4.2e-05     0.083       1      26 [.      26      51 ..      26      63 .. 0.86
   2 ?    0.4   0.0      0.45   8.9e+02       5      30 ..      77     102 ..      76     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
         LPP  1 kldeLssqVsqLkskvdqlssdvnsa 26
                ++++L  +VsqL+++++ql+s+++++
  EHU01803.1 26 QVKQLHREVSQLNQQMQQLTSQASAV 51
                6899****************998776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.45
         LPP   5 LssqVsqLkskvdqlssdvnsakaaa 30 
                 L +qV +L    + +++++  ++a++
  EHU01803.1  77 LQTQVGTLRLSLARIEAEAGGTHADL 102
                 67899999999999999888887776 PP

>> DASH_Dad4  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.1e-05     0.061      20      53 ..      27      60 ..      25      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
   DASH_Dad4 20 vekLnesvvelnkeleeinkkNknvelvsqlwen 53
                v++L+  v +ln+++++ +++ + ve+ +ql ++
  EHU01803.1 27 VKQLHREVSQLNQQMQQLTSQASAVEIQGQLNAH 60
                899**************************99766 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   6.5   5.5e-05      0.11      25     105 ..       9      95 ..       3     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-......-HHHHHHHHHHHCT--EEEEEEET CS
       T2SSM  25 vlllallylllwqPlserieraqaelqklraqlawveeqaaevralraapasalsga......aleqvvtrsarqagLalarlqpqg 105
                 + l ++l  +  +P++ + +++ +e+ +l +q++++++qa+ v+  ++ +a++++ga      +   +++++     L+lar++++ 
  EHU01803.1   9 AALSLVLLSGCSTPAQPQVKQLHREVSQLNQQMQQLTSQASAVEIQGQLNAHSQQGAwllpqaNTPVALQTQVGTLRLSLARIEAEA 95 
                 334444458999******************************998889999999999988877777899999999999999999876 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2    0.0093        19      23      46 ..      24      47 ..      19      63 .. 0.70
   2 ?    5.7   0.0    0.0095        19      35      65 ..      76     106 ..      71     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0093
         CLZ 23 gaeqkeleekverLessLeaLqtr 46
                +++ k+l + v++L++++++L+ +
  EHU01803.1 24 QPQVKQLHREVSQLNQQMQQLTSQ 47
                556667777777777777777654 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0095
         CLZ  35 rLessLeaLqtrlarLlaeyessqrkLkqRi 65 
                  L++++ +L   lar+ ae   +++ L+ R 
  EHU01803.1  76 ALQTQVGTLRLSLARIEAEAGGTHADLTLRT 106
                 5999*********************999885 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00011      0.22      27      51 ..      26      50 ..      24      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 27 eieeLerrvkaLekeNksLkselee 51
                ++++L r+v++L++++++L s+++ 
  EHU01803.1 26 QVKQLHREVSQLNQQMQQLTSQASA 50
                689*****************99876 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   0.00027      0.54      12      50 ..      26      63 ..      23      68 .. 0.91
   2 ?    0.1   0.0      0.56   1.1e+03      20      37 ..      75      91 ..      68      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00027
     NPV_P10 12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqsaq 50
                 +k++   V+ l+qq+++++++   v+ ++ +L+a s+q
  EHU01803.1 26 QVKQLHREVSQLNQQMQQLTSQASAVE-IQGQLNAHSQQ 63
                58999*******************965.*******9987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.56
     NPV_P10 20 Vdalqqqvddvqenlpdv 37
                V alq+qv  ++  l  +
  EHU01803.1 75 V-ALQTQVGTLRLSLARI 91
                4.8999998888776654 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.0   0.00084       1.7      94     125 ..      19      50 ..      13      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00084
     DUF4763  94 lltseqpeileLqrnnhkLrqqlaelqqhlka 125
                 ++t+ qp++++L+r+ ++L qq+++l+++  a
  EHU01803.1  19 CSTPAQPQVKQLHREVSQLNQQMQQLTSQASA 50 
                 57889*********************988765 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.4    0.0013       2.6      27      63 ..      25      61 ..      20      88 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
        YlqD 27 aqieqldkelqqLefqakrlikeikkqsaqqieeiqe 63
                 q++ql +e++qL++q+++l ++++  ++q + ++++
  EHU01803.1 25 PQVKQLHREVSQLNQQMQQLTSQASAVEIQGQLNAHS 61
                5666666666666666666666666555553333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1311  (0.0731218); expected 358.6 (0.02)
Passed bias filter:                      958  (0.053433); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1416.01
//
Query:       EHU01804.1  [L=322]
Description: SecYEG protein translocase auxillary subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-66  222.1  15.0    6.5e-66  221.3  15.0    1.3  1  SecD_SecF  Protein export membrane protein
    6.2e-11   41.4   0.1    1.4e-10   40.3   0.1    1.6  1  Sec_GG     SecD/SecF GG Motif
  ------ inclusion threshold ------
       0.76    9.9   5.2        1.4    9.0   5.1    1.5  1  PIG-F      GPI biosynthesis protein family Pig-F
        3.7    7.2   9.4       0.76    9.4   0.5    2.5  2  PRA1       PRA1 family protein


Domain annotation for each model (and alignments):
>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3  15.0   1.5e-69   6.5e-66       4     188 ..     116     300 ..     113     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 221.3 bits;  conditional E-value: 1.5e-69
                 TTT--SSS-EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHH CS
   SecD_SecF   4 kllkevdkdaekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtv 102
                  ++++++++a+++++e+vgpsv+++la+ ++lall al++iliy+++rFewr+al+ ++al+hDviit+g+lsl+++e+dl++va+l+++iGYS+nd +
  EHU01804.1 116 VINQTTQQNATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGIRFEWRLALGTVLALAHDVIITCGLLSLFRVEIDLTIVASLMSVIGYSLNDKI 214
                 55677888******************************************************************************************* PP

                 HHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHHH- CS
   SecD_SecF 103 vvfdrvrenlrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllllke 188
                 vv dr+ren+rk +r +  +i+n sl+qtL+rt++tslttl ++++l+++gg  lk+f+l++l+G+ +gt+ssi+++s+l+l+l++
  EHU01804.1 215 VVSDRIRENFRKIRRGSSYDITNVSLTQTLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTVSSIYVSSALALKLGM 300
                 *********************************************************************************99875 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1     3e-14   1.4e-10       3      28 .]      41      66 ..      39      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 3e-14
                HHHC--EE-TTTS-EEEEEEEE-TTS CS
      Sec_GG  3 lftkGlNLGlDFtGGthielqfdqpv 28
                 +++G+N+GlDFtGGt+ie+  ++p+
  EHU01804.1 41 VGVRGFNWGLDFTGGTVIEINLEKPA 66
                789*********************97 PP

>> PIG-F  GPI biosynthesis protein family Pig-F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.1   0.00031       1.4      17     107 ..     168     290 ..     149     312 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00031
       PIG-F  17 lvadpvstLlsslivlallqvlyvvlcl..............................e.kkkk....kskkskivlallsllltlllatlllaillvl 80 
                 l   +v +L++ +i+++ l  l+ v +                               + +  +    + ++ +++++l ++l+t+l +tl++ ++l +
  EHU01804.1 168 LALGTVLALAHDVIITCGLLSLFRVEIDltivaslmsvigyslndkivvsdrirenfrKiR--RgssyDITNVSLTQTLSRTLITSL-TTLAMILILFI 263
                 5555555555555555555555444333455566666666677777777766665443122..134666667777777777777777.99999999999 PP

       PIG-F  81 fGApllthlleTlllalhlslltvlpl 107
                 fG  ll+ ++ T+l+ +++ +++ + +
  EHU01804.1 264 FGGALLKGFSLTMLIGVTIGTVSSIYV 290
                 9999***********999877766544 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00017      0.76      80     132 ..     128     181 ..     110     191 .. 0.81
   2 ?    0.9   3.7      0.07   3.1e+02      92     122 ..     223     283 ..     179     292 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00017
        PRA1  80 eplvlfgrel.sdrvvlivllvvsvlllfltgavlvllwalliglllvllHAsf 132
                 + ++++g+++ sd  +  +l+++s l+ +l+  ++ + w l++g +l l+H ++
  EHU01804.1 128 KRIEFVGPSVgSDLAQAGALALLSALIAILIYIGIRFEWRLALGTVLALAHDVI 181
                 33447899999999*************************************765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.07
        PRA1  92 r.............................vvlivllvvsvlllfltg.avlvllwallig 122
                 +                             ++l+++l++ ++   l++   l++l++++ig
  EHU01804.1 223 NfrkirrgssyditnvsltqtlsrtlitslTTLAMILILFIFGGALLKgFSLTMLIGVTIG 283
                 2223344556666666666666665554444444444444444444441344555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2407.67
//
Query:       EHU01805.1  [L=615]
Description: SecYEG protein translocase auxillary subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-41  140.0   9.0    1.4e-39  134.7   0.4    3.3  4  SecD-TM1        SecD export protein N-terminal TM region
      5e-17   61.9  10.1    9.5e-17   61.0  10.1    1.4  1  SecD_SecF       Protein export membrane protein
    3.1e-09   36.2  11.8    3.1e-09   36.2  11.8    1.9  2  MMPL            MMPL family
    1.2e-07   30.9   0.0    2.7e-07   29.9   0.0    1.6  1  Sec_GG          SecD/SecF GG Motif
  ------ inclusion threshold ------
        0.2   11.5   2.8       0.61    9.9   2.3    1.9  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ


Domain annotation for each model (and alignments):
>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.4   3.8e-43   1.4e-39       1     103 []       2     103 ..       2     103 .. 0.99
   2 !   10.0   0.0   0.00026      0.94      39      93 ..     140     195 ..     131     204 .. 0.85
   3 ?   -2.6   0.1       2.2     8e+03      70      91 ..     252     273 ..     207     276 .. 0.60
   4 ?   -2.5   0.1         2   7.2e+03      13      27 ..     486     500 ..     482     534 .. 0.65

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 3.8e-43
    SecD-TM1   1 lNryplWkyllilvvlligllyalPnlygedpavqisaakatlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvlekaLgddy 99 
                 lNryplWky++++vvl+igl+yalPnlygedpavqi++a+++ + +e+tl++++++Lk+ +i++ks++len+++++rf++td ql+A++++ kaLg++y
  EHU01805.1   2 LNRYPLWKYIMLVVVLVIGLVYALPNLYGEDPAVQITGARGS-AASEQTLDQIQNVLKQDNIQAKSVALENGAITARFSNTDVQLRAREAIMKALGENY 99 
                 7*****************************************.99999*************************************************** PP

    SecD-TM1 100 vvAl 103
                 vvAl
  EHU01805.1 100 VVAL 103
                 ***8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00026
    SecD-TM1  39 akatlkvdeatlskveqaLkeagievksi.elenesllvrfestdqqlkAkdvlek 93 
                  +a  k++e+  +++++ L+e++i+++++ +  n ++ +rf+++ ++ +A + l++
  EHU01805.1 140 DTALSKLQEQNADSLRSDLREKNIPYTNVsKIANYGVEIRFRDAASRDAAVKWLSS 195
                 555668999999*****************6778889********999999888875 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.2
    SecD-TM1  70 enesllvrfestdqqlkAkdvl 91 
                  +++++v +   ++ ++Ak++l
  EHU01805.1 252 GSDRIVVELPGIQDTARAKEIL 273
                 2344667777777777777766 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2
    SecD-TM1  13 lvvlligllyalPnl 27 
                  +vl++g+++ lP  
  EHU01805.1 486 NLVLIVGIMSLLPGA 500
                 567777777777654 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0  10.1   2.6e-20   9.5e-17      13     184 ..     433     602 ..     426     606 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.6e-20
                 EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHT.T----HHHHHHHHHHTTSSSHHHHHHHHHHHH CS
   SecD_SecF  13 aekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsll.gievdlatvaalLtiiGYSvndtvvvfdrvre 110
                 +++++  t+gp+++++ +++++ a l  lv+ +++++l+++ +v+l a  al+  ++++vg++sll g  +++  +a++   +   v+ +v++ +r++e
  EHU01805.1 433 IQIVEERTIGPTMGQQNITQGLEACLWGLVASILFMVLYYK-KVGLIATSALLANLVLIVGIMSLLpGATLTMPGIAGIVLTLAVAVDANVLINERIKE 530
                 6788999**********************999998888776.79********************99459****************************** PP

                 HHHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHH CS
   SecD_SecF 111 nlrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplll 184
                 +lr+   ++++++i ++ +  ++  + + +ttl+ vv+l+ +g +s+k+fa++  +G+++ +++si    +++ 
  EHU01805.1 531 ELRN--GRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMFTSIVGTRAIIN 602
                 *998..889**************999***************************************987777665 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.35   1.2e+03      92     118 ..      35      61 ..      34      82 .. 0.75
   2 !   36.2  11.8   8.7e-13   3.1e-09     181     293 ..     482     595 ..     458     612 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.35
        MMPL  92 vtlegdpgsteadesvaairaaveear 118
                 v+++g  gs ++++++++i++++++  
  EHU01805.1  35 VQITGARGSAASEQTLDQIQNVLKQDN 61 
                 788888899999999999998888876 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 8.7e-13
        MMPL 181 llaalglvlilalllglelstf.vlgl.lvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaqvG 277
                  l+a  lvli+  ++ l  +t  ++g+  +vl++av++D ++l+  R++eel++g++ ++a+ + ++++ + ++ a +t  i ++ L ++  +++++++
  EHU01805.1 482 ALLAN-LVLIVGIMSLLPGATLtMPGIaGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIGTGSIKGFA 579
                 33332.356666666666555415566357889****************************************************************** PP

        MMPL 278 vaialGvlvdvlivlT 293
                 ++ a+G++ +++ ++ 
  EHU01805.1 580 ITTAIGIATSMFTSIV 595
                 *********9997765 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   7.5e-11   2.7e-07       2      27 ..     115     140 ..     114     141 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 7.5e-11
                 HHHHC--EE-TTTS-EEEEEEEE-TT CS
      Sec_GG   2 slftkGlNLGlDFtGGthielqfdqp 27 
                 +l+ ++++LGlD++GG+h+++++d++
  EHU01805.1 115 LLAAQPMKLGLDLRGGVHFLMEVDMD 140
                 6899********************97 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.57     2e+03      57      83 ..      74     100 ..      67     107 .. 0.84
   2 ?    9.9   2.3   0.00017      0.61       9     127 ..     476     595 ..     473     611 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.57
                     CHHHHHHHHTTTCHHHHHHHHHHHHCC CS
  Sterol-sensing  57 lvkavqrtsrsldeseriaealgevgp 83 
                     ++  + +t+ +l+  e i++alge  +
      EHU01805.1  74 ITARFSNTDVQLRAREAIMKALGENYV 100
                     7888999***************98755 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                     HHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH.HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHC CS
  Sterol-sensing   9 glagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde.seriaealgevgpsilltsltellalllgalt 102
                     gl ++  +l+ ++  +g++++l   + +++      l lav vd   ++ + +++  r+ +  ++ i e+ + +  si+   +t l+  ++ +++
      EHU01805.1 476 GLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSvQQAIHEGYKGAFSSIVDANVTTLIKVVILYAI 570
                     666777778888888899988855555555546667899999998887877777665554444***************************999** PP

                     CHHHHHHHHHHHHHHHHHHHHHHHT CS
  Sterol-sensing 103 dvpavqeFclfaavavlvdFllqit 127
                         ++ F++ +a++++++ +  i+
      EHU01805.1 571 GTGSIKGFAITTAIGIATSMFTSIV 595
                     ****************998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4207.22
//
Query:       EHU01806.1  [L=110]
Description: SecYEG protein translocase auxillary subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-26   91.4   0.5    2.9e-26   91.1   0.5    1.1  1  YajC      Preprotein translocase subunit
     0.0034   17.6   0.1     0.0058   16.9   0.1    1.3  1  Orf78     Orf78 (ac78)
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.018   14.9   0.1    1.2  1  MreC      rod shape-determining protein MreC
      0.091   12.3   0.0       0.11   12.0   0.0    1.1  1  DUF5385   Family of unknown function (DUF5385)
       0.11   13.1   0.0       0.15   12.6   0.0    1.2  1  DUF1240   Protein of unknown function (DUF1240)
       0.16   11.6   0.1       0.23   11.1   0.1    1.2  1  PIRT      Phosphoinositide-interacting protein family


Domain annotation for each model (and alignments):
>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.5   9.7e-30   2.9e-26       3      79 ..      24      99 ..      21     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 9.7e-30
        YajC  3 llplvlifvifyfllirpqqkkqkehkemlasLkkGdeVvtigGivGkvvkvddd.evtveigesagvkikversaia 79
                +++lv++ +ifyf+++rpqqk++kehk++++s+ kGdeV+t+gG+vG+v+kv ++ ++ + +++   +++ ++r+++a
  EHU01806.1 24 VIMLVVFGLIFYFMILRPQQKRAKEHKKLMDSISKGDEVLTNGGLVGRVTKVAETgYIAIALND--TTEVVIKRDFVA 99
                346666669********************************************76468888854..59*******998 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.9e-06    0.0058      73     101 ..      23      51 ..      20      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
       Orf78  73 vvcvlvllyviyYfvilrerqkssvkeps 101
                 +v++lv++ +i+Yf+ilr +qk+++++++
  EHU01806.1  23 LVIMLVVFGLIFYFMILRPQQKRAKEHKK 51 
                 678899999*************9986655 PP

>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   6.1e-06     0.018      21      45 ..      54      78 ..      48      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.1e-06
                GT--TT-EEEETTEEEEEEEEE-SS CS
        MreC 21 dgvkkgmpVvsgkglVGkVtevgkn 45
                d ++kg+ V+++ glVG+Vt+v ++
  EHU01806.1 54 DSISKGDEVLTNGGLVGRVTKVAET 78
                789*********99********875 PP

>> DUF5385  Family of unknown function (DUF5385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.8e-05      0.11       5      49 ..      20      63 ..      16      65 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
     DUF5385  5 fliiliiiiiiilvivfllrkkkkqkeeekaggkikersdkdEVW 49
                 + ++i++++   +i +++  + +qk++++ ++ + + s++dEV 
  EHU01806.1 20 PYSLVIMLVVF-GLIFYFMILRPQQKRAKEHKKLMDSISKGDEVL 63
                55566666666.667777777777899999999999999****95 PP

>> DUF1240  Protein of unknown function (DUF1240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     5e-05      0.15       8      78 ..      22      95 ..      19     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
     DUF1240  8 kvvlllfssPlllYfsvlvvlvaitnklakvndklvk...llaiiailsfvlslflslYvdyklksegYlvCek 78
                + v++l+ + l++Yf++l       ++ +k+ d++ k   +l+   +++ v  +  + Y++  l+++  +v ++
  EHU01806.1 22 SLVIMLVVFGLIFYFMILRPQQKRAKEHKKLMDSISKgdeVLTNGGLVGRVTKVAETGYIAIALNDTTEVVIKR 95
                5789999************************9999873335666678999999999999999998887766655 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   7.6e-05      0.23      91     119 ..      21      49 ..      14      58 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.6e-05
        PIRT  91 lslGlmllvcGlvwvpiikkkrkqrqksl 119
                 +sl +ml+v+Gl++  +i + +++r k++
  EHU01806.1  21 YSLVIMLVVFGLIFYFMILRPQQKRAKEH 49 
                 7999********98766655554444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 797.78
//
Query:       EHU01807.1  [L=382]
Description: tRNA-guanine transglycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     8e-154  512.0   0.0   9.8e-154  511.7   0.0    1.0  1  TGT       Queuine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> TGT  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.7   0.0  5.5e-158  9.8e-154       2     347 ..      11     364 ..       8     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 511.7 bits;  conditional E-value: 5.5e-158
                 TEEEEEEEETTEEEEESEEEEBETTSSBTTB-HHHHH.HTTES-EEEEHHHHHHTTTHHHHHHTTHHHHHHT--S-EEEE-SHHHHHHH.E..EEESSE CS
         TGT   2 gaRlGklelphgtietPafmpvgtqgtvkgltpdelkeelgaqiilsntyhlelrpgeelvakagglhkflgwdkpiltdsggfqvfsl.k..kiteeg 97 
                 +aR+G+l  ++g++etPafmpvgt+gtvkg+tp+e+ +++gaqiil+nt+hl+lrpg+e+++ +g+lh+f++w++piltdsggfqvfsl +  kite g
  EHU01807.1  11 RARRGRLIFDRGVVETPAFMPVGTYGTVKGMTPEEV-QDTGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLgDirKITEAG 108
                 49**********************************.599*************************************************8456****** PP

                 EEEE-TTTS-EEEE-HHHHHHHHHHHT-SEEE-------SS--HHHHHHHHHHHHHHHHHHHHHH......SEEEEEE--TT-HHHHHHHHHHHHHH-- CS
         TGT  98 vsfqsridGskvlltpeesieiqeklgsDiimalddvvpspaskkrveksverTlrwldrcleah......qalfgivqGglyedlreesaeelakrdf 190
                 v+f+++i+G++++l+pe+s+eiq +lgsDi+m++d+++p+pa+ +++++s+e++lrw++r+ +++      +alfgi+qG++yedlr  s++ l++++f
  EHU01807.1 109 VHFRNPINGDQIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAQRSRDRFdslgnkNALFGIIQGSVYEDLRDVSVKGLVEIGF 207
                 **************************************************************9999****667************************** PP

                 SEEEE-SSSSSSHHHHHHHHHHHHGGGS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHHTTEEEETTEEEETTSGGGTT--SBSSSS--SHH CS
         TGT 191 dgyaigGlsvgeekeellevveavtellpedkprylmGvgtPedlleavalGvDmfdcvyptrtarngraltsegelnlknakyaedfspldegCsCyt 289
                 dgya+gGl+vge+ke++ +++e+v++++pedkprylmGvg+Pedl+e+v++GvDmfdcv+ptr+arng++++++g ++++nak+++d+spld++C+Cyt
  EHU01807.1 208 DGYAVGGLAVGEPKEDMHRILEHVCPQIPEDKPRYLMGVGKPEDLVEGVRRGVDMFDCVMPTRNARNGHLFVTDGVVKIRNAKHKDDVSPLDAECDCYT 306
                 *************************************************************************************************** PP

                 HHH-BHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
         TGT 290 CknytraylhhllktkemlgaiLltiHNlhyylelfkriReaIkegtfeefveefark 347
                 C+ny+raylhhl +++e+lga+L tiHNl+yy++l++ +R+aI+eg++e fv+ef+++
  EHU01807.1 307 CRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRQAIEEGKLERFVTEFYQR 364
                 *******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3070.14
//
Query:       EHU01808.1  [L=79]
Description: hypothetical protein CKS_0254 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 616.50
//
Query:       EHU01809.1  [L=50]
Description: hypothetical protein CKS_0255 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0023   18.0   1.6       0.11   12.6   0.1    2.2  2  UPF0547         Uncharacterised protein family UPF0547
     0.0023   17.6   1.4       0.16   11.7   0.0    2.3  2  zinc_ribbon_2   zinc-ribbon domain
     0.0072   16.1   0.7       0.11   12.2   0.0    2.0  2  DUF2225         Uncharacterized protein conserved in bacteria
  ------ inclusion threshold ------
      0.011   15.1   0.3      0.019   14.3   0.3    1.4  1  zf-TFIIB        Transcription factor zinc-finger
      0.018   14.9   0.2      0.023   14.6   0.2    1.1  1  C1_1            Phorbol esters/diacylglycerol binding domain 
      0.024   14.6   0.1      0.033   14.2   0.1    1.3  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
      0.026   13.9   2.8        2.3    7.8   0.6    2.2  2  zf-ribbon_3     zinc-ribbon domain
      0.028   14.4   1.0        0.2   11.7   0.0    2.1  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
      0.046   13.6   0.8      0.078   12.9   0.8    1.3  1  Prok-RING_1     Prokaryotic RING finger family 1
       0.05   13.5   0.1      0.074   13.0   0.1    1.3  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
       0.08   13.1   0.8      0.091   12.9   0.8    1.1  1  DUF2387         Probable metal-binding protein (DUF2387)
       0.13   12.1   3.4       0.84    9.6   3.4    2.0  1  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
       0.15   12.6   0.8        1.4    9.5   0.0    2.1  2  zf-H2C2_2       Zinc-finger double domain
       0.49   10.9   0.2       0.49   10.9   0.2    2.1  2  Zn-C2H2_12      Autophagy receptor zinc finger-C2H2 domain


Domain annotation for each model (and alignments):
>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.023        30       1       9 [.      14      22 ..      14      27 .. 0.72
   2 !   12.6   0.1   8.3e-05      0.11      16      23 ..      39      46 ..      33      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.023
     UPF0547  1 KvCPeCeak 9 
                K CP C+++
  EHU01809.1 14 KFCPICAEI 22
                558888775 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 8.3e-05
     UPF0547 16 fCphCGyv 23
                +Cp+CGy+
  EHU01809.1 39 KCPECGYE 46
                7*****97 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.015        19      14      19 ..      14      19 ..      14      22 .. 0.85
   2 !   11.7   0.0   0.00013      0.16      11      22 ..      31      46 ..      27      46 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.015
  zinc_ribbon_2 14 kFCpyC 19
                   kFCp C
     EHU01809.1 14 KFCPIC 19
                   799999 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00013
  zinc_ribbon_2 11 dnakF....CpyCGtp 22
                   d+++F    Cp+CG++
     EHU01809.1 31 DGVTFdiwkCPECGYE 46
                   5666666667777764 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.035        44       8      21 ..      16      29 ..      14      34 .. 0.84
   2 !   12.2   0.0   8.5e-05      0.11      41      60 ..      30      49 ..      28      50 .] 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.035
     DUF2225  8 CPvCeekfkkkkvk 21
                CP+C e +++ ++ 
  EHU01809.1 16 CPICAEIMQTSTLT 29
                *******9999876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.5e-05
     DUF2225 41 vnplfYevvvCpkCgYaalk 60
                v+   ++++ Cp+CgY  +k
  EHU01809.1 30 VDGVTFDIWKCPECGYEEVK 49
                566789**********8765 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   1.5e-05     0.019       2      26 ..      16      44 ..      15      44 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
    zf-TFIIB  2 CPkCqdeleeser..gg..veidyCpqCr 26
                CP C   +++s +  +g  + i++Cp+C+
  EHU01809.1 16 CPICAEIMQTSTLtvDGvtFDIWKCPECG 44
                ******999887777883466789****7 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.8e-05     0.023      11      36 ..      13      45 ..       6      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                --B-TTT-SB-.......-SSSS-EEEETTT-- CS
        C1_1 11 ptfCkhCgefl.......wgkekqglkCswCkl 36
                p+fC  C+e++        g  + ++kC +C++
  EHU01809.1 13 PKFCPICAEIMqtstltvDGVTFDIWKCPECGY 45
                89**************97779**********97 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.6e-05     0.033      21      45 ..      16      45 ..       7      46 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
  Zn_Tnp_IS1595 21 CPhCgsrkayrikt.......rglfqCkeCrk 45
                   CP C+     +++t          ++C eC++
     EHU01809.1 16 CPICAEI--MQTSTltvdgvtFDIWKCPECGY 45
                   *****65..4444444699*9*********98 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0058       7.4       3      10 ..      14      21 ..      14      26 .. 0.74
   2 ?    7.8   0.6    0.0018       2.3      18      24 ..      39      45 ..      38      46 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0058
  zf-ribbon_3  3 vrCPnCGa 10
                 ++CP C +
   EHU01809.1 14 KFCPICAE 21
                 57999977 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0018
  zf-ribbon_3 18 vCpyCGt 24
                 +Cp CG+
   EHU01809.1 39 KCPECGY 45
                 4777776 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2       0.2   2.6e+02      22      26 ..      16      20 ..      12      22 .. 0.73
   2 ?   11.7   0.0   0.00015       0.2      18      28 ..      36      46 ..      26      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.2
  PhnA_Zn_Ribbon 22 CpeCa 26
                    Cp Ca
      EHU01809.1 16 CPICA 20
                    66666 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
  PhnA_Zn_Ribbon 18 allvCpeCahE 28
                    +++ CpeC++E
      EHU01809.1 36 DIWKCPECGYE 46
                    6899*****98 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   6.1e-05     0.078       6      27 ..      15      44 ..      12      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-05
  Prok-RING_1  6 kCpvCgkelkee........dDiVvCpeCg 27
                  Cp+C + ++           Di  CpeCg
   EHU01809.1 15 FCPICAEIMQTStltvdgvtFDIWKCPECG 44
                 6******99999999988888********9 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.8e-05     0.074      30      55 ..      15      46 ..      10      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
  OrfB_Zn_ribbon 30 tCseCgsknke......alsgrtfkCpnCgfe 55
                     C+ C +++++       ++ + +kCp+Cg+e
      EHU01809.1 15 FCPICAEIMQTstltvdGVTFDIWKCPECGYE 46
                    6**********9998877888889******97 PP

>> DUF2387  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   7.1e-05     0.091      10      41 ..      15      48 ..      10      50 .] 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-05
     DUF2387 10 vCPrCsemDkirmweede..veyrECvsCgftde 41
                 CP C+e  ++ + + d+   ++  C +Cg+ + 
  EHU01809.1 15 FCPICAEIMQTSTLTVDGvtFDIWKCPECGYEEV 48
                5*****************666789*******885 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00066      0.84       2      31 ..      14      47 ..      14      50 .] 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00066
                    EBESTTTSBEEEEE.CSCCCE...EEESSSS-EE CS
  RNA_POL_M_15KD  2 kFCpkCgNlLlpke.dkegkn...feCrqCgYee 31
                    kFCp C   +   +  + g+      C  CgYee
      EHU01809.1 14 KFCPICAEIMQTSTlTVDGVTfdiWKCPECGYEE 47
                    79******997544133333334678******98 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.23   2.9e+02      16      21 ..      15      20 ..       3      21 .. 0.80
   2 ?    9.5   0.0    0.0011       1.4      14      22 ..      37      45 ..      25      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.23
   zf-H2C2_2 16 eCplCd 21
                 Cp C+
  EHU01809.1 15 FCPICA 20
                6***96 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
   zf-H2C2_2 14 pyeCplCdk 22
                +++Cp+C++
  EHU01809.1 37 IWKCPECGY 45
                58*****98 PP

>> Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00039      0.49       1      10 [.      14      23 ..      14      27 .. 0.81
   2 ?    1.3   0.7      0.37   4.8e+02       2       8 ..      39      45 ..      39      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00039
  Zn-C2H2_12  1 KeCPlCseqF 10
                K CP+C+e+ 
  EHU01809.1 14 KFCPICAEIM 23
                78*****985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.37
  Zn-C2H2_12  2 eCPlCse 8 
                +CP C++
  EHU01809.1 39 KCPECGY 45
                7**9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 438.99
//
Query:       EHU01810.1  [L=80]
Description: hypothetical protein CKS_0256 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 605.81
//
Query:       EHU01811.1  [L=279]
Description: hypothetical protein CKS_0257 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2390.24
//
Query:       EHU01812.1  [L=263]
Description: endonuclease/exonuclease/phosphatase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-06   28.0   0.3    9.4e-06   25.3   0.3    2.0  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.025   14.4   0.0    1.6  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.3     1e-09   9.4e-06       3     233 .]      49     252 ..      47     252 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1e-09
                    EEESTGCHHHHTHHHHHHHHHHHHHHC..TTSEEEEEEEBSCTCHHHHHHHHH..........................TTCEEEEECCH...... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxx...... RF
  Exo_endo_phos   3 wNvngqaspalgssrrsdrladlltay..daDvlgLQEvdddelsriplllal..........................ggflgasstsp...... 64 
                    wN+  q         + ++ +++l+ +  da +++LQE++  ++ ++ +++++                                    +      
     EHU01812.1  49 WNIFKQ---------QRADWMSVLEGFgkDAHLVLLQEAQTTPELIRFATSNYlaadqvpalvlpqhpsgvmtlasahpV---------Yccplre 126
                    777776.........56667777766677888888888888887777777755555555555555444444444433330.........0333333 PP

                    ....................................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHH CS
                    ....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 ....................................tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlniashrdhdlv 124
                                                        ++ ++ +                                                     
     EHU01812.1 127 repllrlsksalvtayplptgemlmvvnihavnfslGVDVYSK----------------------------------------------------- 169
                    3333444444444433333333333333333333332222222..................................................... PP

                    HHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECC CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 125 rdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrlDrilaspalalfrsgvlpppl 220
                           +l  + +   ++ +pvi aGDfNa    ++ +++++  + ++++     l     t+ ++++a+g  lD ++++ +  +  ++vl  ++
     EHU01812.1 170 -------QLGPIGEQIIHHRGPVIMAGDFNA----WSRQRINALYRFAHQM----KLEEVMFTADHRRKAFGRPLDFVFYR-DIHVSEASVLVTQA 249
                    .......222245555777888999******....8888888888888875....9999**********************.58888888888888 PP

                    HHEECTSSCSSSB CS
                    xxxxxxxxxxxxx RF
  Exo_endo_phos 221 alvrrealtlSDH 233
                              SDH
     EHU01812.1 250 ----------SDH 252
                    ..........999 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-06     0.025      26     118 ..     180     255 ..     164     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-06
  Exo_endo_phos_2  26 selkspkiiilGDfNakhplWgsedtdssargeeLiefleehslsllnllksgptfkssngsstiDltltsdnlalskleleeedlgSDHrpi 118
                         +  ++i++GDfNa    W+       +r + L++f ++ +l+   ++  + +++++     +D+++ +d  + ++  l      SDH+p 
       EHU01812.1 180 HHRG--PVIMAGDFNA----WSR------QRINALYRFAHQMKLE---EVMFTADHRRKAFGRPLDFVFYRDIHVSEASVL--VTQASDHNPL 255
                      4444..9********7....988......8999************...555566776666689******998777773332..3578999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1831.53
//
Query:       EHU01813.1  [L=458]
Description: membrane-bound lytic murein transglycosylase D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-27   94.9   0.2    7.7e-13   48.3   0.1    3.7  4  LysM      LysM domain
    2.3e-27   95.0   0.0    3.7e-27   94.3   0.0    1.4  1  SLT       Transglycosylase SLT domain
     0.0016   18.5   0.2      0.087   12.9   0.0    3.2  3  OapA      Opacity-associated protein A LysM-like domain
  ------ inclusion threshold ------
      0.048   13.7   0.0       0.83    9.7   0.0    2.3  2  DUF3071   Protein of unknown function (DUF3071)
      0.069   13.1   0.3         16    5.6   0.1    2.7  2  RWP-RK    RWP-RK domain
      0.075   13.2   1.1       0.13   12.5   0.5    1.8  2  MLTD_N    MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.22   6.4e+02      33      43 ..     262     278 ..     242     279 .. 0.64
   2 ?   -3.2   0.0         3   9.1e+03      17      28 ..     286     298 ..     282     303 .. 0.74
   3 !   48.3   0.1   2.6e-16   7.7e-13       1      43 [.     348     389 ..     348     390 .. 0.97
   4 !   41.4   0.0   3.6e-14   1.1e-10       1      43 [.     405     448 ..     405     449 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
                 G......G--TTEEEEE CS
        LysM  33 d......kifpGqkLki 43 
                 d      ++++Gq++k+
  EHU01813.1 262 DenralaRVEVGQQIKL 278
                 4555556799*****97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                 TCHHHHHHHHC.T CS
        LysM  17 gitveklleaN.n 28 
                 g+++ kl++ N +
  EHU01813.1 286 GMSLTKLKSFNtG 298
                 8899999999954 PP

  == domain 3  score: 48.3 bits;  conditional E-value: 2.6e-16
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 Y+V++GDTL++IA++ g++v +l++ Nnl+s   i+pGq L++
  EHU01813.1 348 YKVRSGDTLSGIANKLGVSVATLKQQNNLRSAS-IRPGQLLTV 389
                 9********************************.*****9986 PP

  == domain 4  score: 41.4 bits;  conditional E-value: 3.6e-14
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCG.G--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspd.kifpGqkLki 43 
                 Y+V+kGD+L sIA+r+g+++++ +++N + s+   i+pG++L++
  EHU01813.1 405 YRVRKGDSLDSIARRHGVNIKDVMRWNSVVSNAkDIQPGDELTL 448
                 9**************************77777769******985 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   1.2e-30   3.7e-27       2     113 ..     110     221 ..     109     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 1.2e-30
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHH CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegt 100
                 ++i ++ k++ +p++l+ ++ vES+f+p+A+s+++a+G++Qi+ st +++gl++++ +d+++d++ +++++  ++++l+++++g++ll++aAYN+Geg+
  EHU01813.1 110 YWIVEQIKKRNMPMELVLLPIVESAFDPHATSSANAAGIWQIVGSTGRNYGLKQNRYYDGRRDVVASTKVALDMMQRLNTMFGGDWLLTVAAYNSGEGR 208
                 788889999****************************************************************************************** PP

                 HHHTTHSSHHHHH CS
         SLT 101 vkkakkevkkkek 113
                 v ka+k++k++ k
  EHU01813.1 209 VLKAIKQNKARGK 221
                 ********99876 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.26   7.7e+02      37      56 ..     264     283 ..     260     296 .. 0.76
   2 ?    0.4   0.0      0.24   7.1e+02       5      24 ..     348     367 ..     344     394 .. 0.71
   3 !   12.9   0.0   2.9e-05     0.087       3      54 ..     403     451 ..     401     457 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
        OapA  37 dkplSnlksGqkvriklnaq 56 
                 +++l+++  Gq++++ ++a+
  EHU01813.1 264 NRALARVEVGQQIKLTQAAE 283
                 67899999***999877654 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.24
        OapA   5 yqvkkgktLaqvFRdnnLpl 24 
                 y+v++g+tL+ +  + ++++
  EHU01813.1 348 YKVRSGDTLSGIANKLGVSV 367
                 89999999998865544444 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.9e-05
        OapA   3 keyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvrikln 54 
                  +y+v+kg++L  + R +++++ dv+    v  + k   +++ G+++++ ++
  EHU01813.1 403 ITYRVRKGDSLDSIARRHGVNIKDVMRWNSVVSNAK---DIQPGDELTLFVK 451
                 58***********************99888875544...5677777776655 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.14   4.1e+02      62      84 ..     349     371 ..     347     375 .. 0.90
   2 ?    9.7   0.0   0.00028      0.83      58      90 ..     402     434 ..     391     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
     DUF3071  62 riRaGasveevaeeagvsverve 84 
                 ++R+G +   +a+++gvsv+ ++
  EHU01813.1 349 KVRSGDTLSGIANKLGVSVATLK 371
                 69****************98765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00028
     DUF3071  58 eIQariRaGasveevaeeagvsververyahPv 90 
                  I  r+R+G s + +a++ gv+++ v+r+   v
  EHU01813.1 402 SITYRVRKGDSLDSIARRHGVNIKDVMRWNSVV 434
                 6788************************98766 PP

>> RWP-RK  RWP-RK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0054        16      13      31 ..     276     294 ..     274     298 .. 0.91
   2 ?    4.5   0.0     0.011        33      19      31 ..     360     372 ..     355     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0054
      RWP-RK  13 lplkeAAksLgvskttLKr 31 
                 ++l++AA+  g+s t+LK 
  EHU01813.1 276 IKLTQAAEMAGMSLTKLKS 294
                 6899**************7 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
      RWP-RK  19 AksLgvskttLKr 31 
                 A++Lgvs +tLK+
  EHU01813.1 360 ANKLGVSVATLKQ 372
                 99**********7 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   4.3e-05      0.13      21      33 ..       5      17 ..       1      18 [. 0.92
   2 ?   -4.1   0.0         6   1.8e+04      10      16 ..     263     269 ..     261     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
      MLTD_N 21 salaaaalLaGCQ 33
                ++l+a+ lL+GCQ
  EHU01813.1  5 AILFASVLLVGCQ 17
                69*********** PP

  == domain 2  score: -4.1 bits;  conditional E-value: 6
      MLTD_N  10 vkdALtR 16 
                   +AL+R
  EHU01813.1 263 ENRALAR 269
                 579**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3276.47
//
Query:       EHU01814.1  [L=251]
Description: putative hydroxyacylglutathione hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-22   79.2   0.0    3.6e-22   78.7   0.0    1.3  1  HAGH_C         Hydroxyacylglutathione hydrolase C-terminus
    2.5e-21   76.6   0.5    9.7e-20   71.4   0.5    2.2  1  Lactamase_B    Metallo-beta-lactamase superfamily
    7.9e-08   32.0   0.1    1.4e-07   31.2   0.1    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.039   13.8   0.0    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain
      0.044   13.2   0.0      0.079   12.4   0.0    1.4  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0     1e-25   3.6e-22       1      80 []     166     251 .]     166     251 .] 0.97

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1e-25
      HAGH_C   1 EYtlsNlkFalsvepdnealkkrlkevkelrakgeptvpstladEkktNpFLRldepevqkavg.ee.....vevfaaLRelKdnF 80 
                 EYtlsNlkFa+++ p+++++ + ++++k+lra+++ t+p++la+E+ +N FLR++++++q+a++ ++     +++fa LRe+Kd F
  EHU01814.1 166 EYTLSNLKFAAAILPHDPQITAEYHKIKDLRAENRITLPTKLAHERVINLFLRTQDSDLQRALNvDAgvgpvWQTFAVLREKKDAF 251
                 9*************************************************************99755899**************98 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.5   2.7e-23   9.7e-20       9     197 .]      16     165 ..      10     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2.7e-23
                  EEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCE CS
  Lactamase_B   9 yliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkp 106
                  +l +++g+++++D+G  ++   +      +  ++ ++ a++lTH+H DH+Gg++ l+e+++   ++ +        e a                 ++
   EHU01814.1  16 TLTDDEGKCLIVDPGEAQPVLEK------IQANDWQPVAILLTHHHNDHVGGVKTLCEHFPEIAVYGP-------QETA-----------------DK 83 
                  555689****************8......89***************************9975555444.......4444.................23 PP

                  EEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.SS CS
  Lactamase_B 107 dvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.gH 197
                  ++++ +++g+  ++++l + ++ ++gh+ g+++y ++ +lf+GD+ ++g  gr+ +          +  e+  +s+ kl  l+ ++lv+ +H
   EHU01814.1  84 GAKTCVREGDNVDVLGLSFAVIATPGHTLGHISYYSAPYLFCGDTMFSGGCGRLFE----------GTPEQMYQSFQKLNSLPEDTLVCcAH 165
                  388999**************************************************..........99999999999999*******99888 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1     4e-11   1.4e-07       6      82 ..      28      96 ..      24     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4e-11
                   S--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTT CS
  Lactamase_B_2  6 DagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleee 82
                   D+g       ++ l++ +  ++ +p++ +llth H DH+ g+ tl e +  ++ +y+p++++++ ++ +v++ ++++
     EHU01814.1 28 DPGEA-----QPVLEKIQ-ANDWQPVA-ILLTHHHNDHVGGVKTLCE-HFPEIAVYGPQETADKGAKTCVREGDNVD 96
                   55554.....34443333.45555665.*******************.5567***********99999998887776 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.039      10      51 ..      15      60 ..      11     121 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
  Lactamase_B_3 10 fllet.agarilvDPfka...nlgyeppaeeaDlvlisqaledHah 51
                   + l++ +g+ ++vDP++a     + +++  ++ ++l++++++dH  
     EHU01814.1 15 WTLTDdEGKCLIVDPGEAqpvLEKIQANDWQPVAILLTHHHNDHVG 60
                   66666369********775333444555578899*******99963 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.2e-05     0.079       9      79 ..      25      84 ..      17     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
  Lactamase_B_6  9 iLlDvGwdeskvslesalkelekviptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLG 79
                   +++D+G  +       +l++++    +  +iLL+h   +h+G+   l+ +f+     +i vy+++ ++  G
     EHU01814.1 25 LIVDPGEAQP------VLEKIQANDWQPVAILLTHHHNDHVGGVKTLCEHFP-----EIAVYGPQETADKG 84
                   5566666553......35555555556679******************9986.....68888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1815.21
//
Query:       EHU01815.1  [L=244]
Description: putative S-adenosyl-L-methionine-dependent methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-09   37.6   0.0    3.8e-09   37.1   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
     0.0073   17.0   0.0      0.012   16.4   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.025   14.4   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      0.058   11.9   0.0      0.074   11.6   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.091   13.5   0.0       0.14   12.9   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
       0.19   11.0   0.0       0.25   10.6   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.3e-12   3.8e-09      44      96 .]      76     125 ..      29     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.3e-12
                      EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  44 kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96 
                      +   v a  ++lpfe +s+D++++ ++l + +dp+++l+e+ RvL  +G+++i
       EHU01815.1  76 Q---VLAHPTQLPFEAKSVDACLLAHTLSWSQDPHRVLREVDRVLIDDGWMII 125
                      3...7788899**************************************9986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.9e-06     0.012      53      97 .]      79     121 ..      55     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.9e-06
                      SBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  53 gdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +  ++lpfe++s+D+++++++l++   +d +++l+e+ rvL ++G
       EHU01815.1  79 AHPTQLPFEAKSVDACLLAHTLSW--SQDPHRVLREVDRVLIDDG 121
                      45589*************877776..56788**********8887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.4e-06     0.025      75     139 ..      83     168 ..      39     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.4e-06
  Methyltransf_23  75 eaaepqgkfdlIvlrevlehvpdppellrqiatllkpgGylllseplasl.....................kedrllldwlylvpa 139
                      + ++++++ d   l ++l + +dp+++lr + + l ++G++++s ++  +                      + ++lldwl l + 
       EHU01815.1  83 QLPFEAKSVDACLLAHTLSWSQDPHRVLREVDRVLIDDGWMIISGFNPFSllgiskivpgiqrkapwsgrmFSQMRLLDWLGLLNY 168
                      55678889999999*******************************98766899999999999998888887788888888766554 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05     0.074     173     219 ..      82     127 ..      58     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
  Methyltransf_29 173 krlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgGyfvlsa 219
                      ++lp+ ++s d    +   + w+++   +l evdRvl  +G++++s+
       EHU01815.1  82 TQLPFEAKSVDACLLAH-TLSWSQDPHRVLREVDRVLIDDGWMIISG 127
                      68999999999877665.579************************98 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05      0.14      64      98 ..      83     122 ..      48     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
  Methyltransf_12  64 g.....ssfDlvvasnvlhhlkdirevldnirklLkpgGr 98 
                      +     +s+D+ +++++l++ +d+++vl+++ ++L ++G+
       EHU01815.1  83 QlpfeaKSVDACLLAHTLSWSQDPHRVLREVDRVLIDDGW 122
                      2455569******************************997 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.5e-05      0.25     104     152 ..      78     126 ..      55     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.5e-05
                      E--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEE CS
  Ubie_methyltran 104 qanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvl 152
                       a   +Lpfe +s D   +++ l    D +++L+e+ rvl   G +++ 
       EHU01815.1  78 LAHPTQLPFEAKSVDACLLAHTLSWSQDPHRVLREVDRVLIDDGWMIIS 126
                      567789**********************************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1854.77
//
Query:       EHU01816.1  [L=155]
Description: ribonuclease HI [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-55  186.1   0.0    4.1e-55  185.9   0.0    1.0  1  RNase_H   RNase H
  ------ inclusion threshold ------
       0.16   10.7   0.0       0.22   10.3   0.0    1.1  1  Fe-ADH    Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.0   4.5e-59   4.1e-55       2     142 ..       3     141 ..       2     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 4.5e-59
                 .SEEEEEEEEEECTTTCEEEEEEE.CTT..EEEEEEECCCCHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSBHT CS
     RNase_H   2 kavvvYtDGsclgnpgeggagavl.ykegarnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkpvk 99 
                 k+v +YtDGsclgnpg+gg+ga+l y++ ++++sa ++  +tnnr+EL+A+i +L+alk++++v+++tDS+Yv++gitqw+h+wkk++wkt++++ pvk
  EHU01816.1   3 KQVEIYTDGSCLGNPGPGGYGAILrYGQHEKTFSAGYR-LTTNNRMELMAAIVSLEALKQPCDVVLSTDSQYVRQGITQWIHNWKKRGWKTADKK-PVK 99 
                 899*******************887988677******9.**************************************************998888.*** PP

                 THHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H 100 nkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 n dl+++l+++ + +++q++wvkgHaG+p +Ne++D+lA++aa
  EHU01816.1 100 NVDLWQRLDTALSTHQIQWEWVKGHAGHP-ENERCDELARHAA 141
                 ****************************9.**********997 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.4e-05      0.22      29      80 ..      92     143 ..      74     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.4e-05
                 EEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT CS
      Fe-ADH  29 vtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalaree 80 
                  +dk+ +k+ +l++++ ++l+ ++i+++ ++g  ++p+ e ++e+a+ a ++
  EHU01816.1  92 TADKKPVKNVDLWQRLDTALSTHQIQWEWVKGHAGHPENERCDELARHAANH 143
                 5789999999*************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1246.93
//
Query:       EHU01817.1  [L=243]
Description: DNA polymerase III epsilon subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-39  134.8   0.0      5e-39  134.5   0.0    1.1  1  RNase_T         Exonuclease
    1.1e-06   28.7   0.0    3.4e-06   27.1   0.0    1.7  1  DUF5051         3' exoribonuclease, RNase T-like
    7.5e-05   22.5   0.0     0.0049   16.6   0.0    2.5  2  DNA_pol_A_exo1  3'-5' exonuclease
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.015   14.8   0.0    1.2  1  vATP-synt_AC39  ATP synthase (C/AC39) subunit


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   1.1e-42     5e-39       1     165 []       9     175 ..       9     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 1.1e-42
                 EEEEEEESSSTT....CTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEE CS
     RNase_T   1 vviDlEttglda....kekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafd 95 
                 +v+D+Ettg++     +e ++iiei+a+++++++  +g++fh+y kp++l  +++e+  ++gi +e+l ++p+f e+++ef +++r +a+lv hna+fd
  EHU01817.1   9 IVLDTETTGMNMigvhYEGHRIIEIGAVEVVNRRL-TGNNFHMYLKPDRL--VDPEAFGVHGIADEFLLDKPTFSEIADEFLDYIR-GAELVIHNASFD 103
                 79**************88****************8.**************..**********************************.************ PP

                 EESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..HHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T  96 vgflraadkrilkkevpkrnqfldtlildkatlkelar..tsldklaeklgleedgr.aHrAldDaeataklf 165
                 +gf++++++++  + ++k++ f++  + + ++ +++++  +sld+l+ ++ +++++r  H Al Dae +a++f
  EHU01817.1 104 IGFMDYEFSKL-ERGIEKTETFCKITDSLAMARRMFPGkrNSLDALCSRYEIDNSKRtLHGALLDAEILAEVF 175
                 **********9.88899888888888888888888887888******************************98 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.5e-10   3.4e-06       2     164 ..       8     177 ..       7     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.5e-10
     DUF5051   2 klmiDiEtlgne......etaelvsIGaVff...petG.eFyaeidlesdeeag.idaetieWWlkqskearaellkdtqeakslkdalqaleeFleks 89 
                 ++++D+Et+g++      e+  +++IGaV +     tG +F+   +++   +++              + ++ e+l    +++++++++ ++ +++ + 
  EHU01817.1   8 QIVLDTETTGMNmigvhyEGHRIIEIGAVEVvnrRLTGnNFHMYLKPDRLVDPEaFG----------VHGIADEFLL---DKPTFSEIADEFLDYI-RG 92 
                 5899****999888888999***********9997899*********8885443211..........2334455553...469*************.48 PP

     DUF5051  90 lkvwangasfDlviLraafel...................lipwkywndrdvrtlvala.pelekgeekkreipfe.gvkHnALaDAkhqakavsa 164
                  +++ ++asfD+  + + f+                    +           r +  ++ + l  ++  ++ei     + H AL DA+  a+++ +
  EHU01817.1  93 AELVIHNASFDIGFMDYEFSKlergiektetfckitdslaM----------ARRMFPGKrNSLDALC-SRYEIDNSkRTLHGALLDAEILAEVFLT 177
                 89*****************9999999876544433333221..........2333333332333332.334443335889********99998766 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.012        52      19      47 ..       5      34 ..       1      41 [. 0.77
   2 !   16.6   0.0   1.1e-06    0.0049      78     128 ..      93     152 ..      70     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
                    TSSEEEEEEEEE-SSSTTS.SEEEEEEEEE CS
  DNA_pol_A_exo1 19 nlkvvavDtEttsldlisa.tlvliliqlg 47
                    n   + +DtEtt+++ i + +   ++i++g
      EHU01817.1  5 NNRQIVLDTETTGMNMIGVhYEGHRIIEIG 34
                    556889*********998866666777776 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.1e-06
                     SEEEESSHHHHHHHHHHHHTS--SSEEEHHHHHHHTTHSTT.........SSHHHHHHHH CS
  DNA_pol_A_exo1  78 itkvghnakfDlevlardfgielenlfdtmlaayvldyers.........hsLdsLaeky 128
                      + v+hna+fD+ +++++f    +++  t+   ++ d              sLd L+ +y
      EHU01817.1  93 AELVIHNASFDIGFMDYEFSKLERGIEKTETFCKITDSLAMarrmfpgkrNSLDALCSRY 152
                     578***************888888888775544444433334667788888999999887 PP

>> vATP-synt_AC39  ATP synthase (C/AC39) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.4e-06     0.015      64     119 ..     127     178 ..     114     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-06
                     HHHHTTTGGGGS-H.HHHHHHHHHHHHHHHHHHHHHHHHHH.T--GGGS-..--.S CS
  vATP-synt_AC39  64 larefnklreqapgpsrefldyllyrydidNvklllrgklsgdldleeleeklhpl 119
                     + + ++  r++ pg+ r+ ld+l+ ry+idN k  l g l  d+  e l e ++ +
      EHU01817.1 127 ITDSLAMARRMFPGK-RNSLDALCSRYEIDNSKRTLHGALL-DA--EILAEVFLTM 178
                     5677888999*****.7************************.67..4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1794.22
//
Query:       EHU01818.1  [L=499]
Description: cytosine/purine/uracil/thiamine/allantoin permease family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-81  271.9  37.2      1e-80  271.7  37.2    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
    0.00011   21.9   1.8      0.052   13.3   0.0    4.2  4  DUF2976         Protein of unknown function (DUF2976)
  ------ inclusion threshold ------
      0.042   13.5   4.2       0.36   10.6   0.4    3.5  3  PRD1_DD         PRD1 phage membrane DNA delivery


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7  37.2   1.7e-84     1e-80       5     440 .]      32     465 ..      29     465 .. 0.96

  Alignments for each domain:
  == domain 1  score: 271.7 bits;  conditional E-value: 1.7e-84
  Transp_cyt_pur   5 eeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaiv 99 
                         w+++n+fs+W++++++   +v++a++++lgL  wq++l+ ++g  i+     l ++ ++  G+p +++ R  fG++g+++p+++r++ia  
      EHU01818.1  32 RHQNWSWYNIFSFWMSDVHSMGGYVVAASFFTLGLASWQVLLCLLAGICIVQLCANLVAKPSQMAGVPYAVICRQAFGVFGANIPAVIRGLIAFA 126
                     5678******************************************************************************************* PP

  Transp_cyt_pur 100 wfgvqawiGsealllmlgkifgk.wleigg.ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.Gpvl 191
                     w+g+q+w++++al l+l k +++ +  +     lg+s  ++ +f + wv+++++ ++g+s+i++f  ia ++v+v+  +++ w++ k++  G  +
      EHU01818.1 127 WYGIQTWLAANALMLVLLKFYPSlE-SLTHsHWLGLSQLGWYCFGVMWVLQAMVFWHGMSAIKRFIDIAGPAVYVVMLALAGWIVYKTGFdGISF 220
                     **********************963.4443499********************************************************997665 PP

  Transp_cyt_pur 192 dkavklg.kse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdeta 282
                       a+k+    e    +++a a+v++ f+   ln +DF+ry+k+  +  ++   ++p+ f l++++ +++++++++++g+ + +p + +  + + +
      EHU01818.1 221 TLAGKSLsIGEqtwQMITATALVVSYFSGPLLNFGDFSRYGKSMCEVRRGNRWGLPFNFLLFSIVTVVIVSGTQSLFGKMITDPIETVSMVGSDL 315
                     545444423346889****************************************************************************999* PP

  Transp_cyt_pur 283 gvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagviiadyfvvrrgy 377
                     +v++ l+++  a++g+ni an +s+++d+++  P+ki++++g +iaav +++ +pw+l +s +  +   l++l+ f++p  g+++ad++ ++ g+
      EHU01818.1 316 AVAIGLLTMITATIGINIVANFVSPAFDFSNCSPQKISFRTGGMIAAVGSVLLTPWNLFQSPEL-IHYTLDVLGSFIGPLFGILLADFYLIKGGR 409
                     ***************************************************************9.8889************************** PP

  Transp_cyt_pur 378 lklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     +++++l+++ ++++Ywyr+g+N++a++a + ++a++lv        ++++ + ++++ s+++G
      EHU01818.1 410 ISVDDLFDATPQGRYWYRGGFNPKAIVALLPSVAICLVI-------SFIPSLHQVANFSWFIG 465
                     ***************************************.......99**************9 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0069        41       6      40 ..      29      62 ..      27      72 .. 0.87
   2 ?   -2.1   0.0      0.59   3.5e+03      64      84 ..      71      91 ..      64      94 .. 0.71
   3 !   13.3   0.0   8.7e-06     0.052      13      75 ..     301     368 ..     292     372 .. 0.78
   4 ?   -0.7   0.1      0.22   1.3e+03      69      84 ..     463     478 ..     456     482 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0069
     DUF2976  6 aPssgekggdllelikgylkdgvillgLvlaavaf 40
                aP++ + + ++ ++++ ++ d+  ++g v+aa  f
  EHU01818.1 29 APTRHQ-NWSWYNIFSFWMSDVHSMGGYVVAASFF 62
                588888.899******************9998765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.59
     DUF2976 64 fgltlvvGvvllvvviwLltk 84
                + l l+ G++++ ++  L++k
  EHU01818.1 71 VLLCLLAGICIVQLCANLVAK 91
                445667788888888888776 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 8.7e-06
     DUF2976  13 ggdllelikgylkdgvillgLvl...aavaflaVakaalk..kfneisegkaewgkfgltlvvGvvll 75 
                  +d++e+++ ++ d+++ +gL+    a++++  Va+ +     f+++s +k +++  g++++vG vll
  EHU01818.1 301 ITDPIETVSMVGSDLAVAIGLLTmitATIGINIVANFVSPafDFSNCSPQKISFRTGGMIAAVGSVLL 368
                 5799*************9999751114555555555544323689*********************98 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.22
     DUF2976  69 vvGvvllvvviwLltk 84 
                  +Gv l + + wL+++
  EHU01818.1 463 FIGVALAASCYWLVAR 478
                 5899999999999876 PP

>> PRD1_DD  PRD1 phage membrane DNA delivery
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.027   1.6e+02       9      34 ..      73      98 ..      70     103 .. 0.83
   2 ?   10.6   0.4     6e-05      0.36       8      26 ..     321     339 ..     317     365 .. 0.92
   3 ?   -1.8   0.0      0.44   2.6e+03      16      33 ..     464     484 ..     460     496 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.027
     PRD1_DD  9 vtvltAiiGvAilAvlvsrrsntAGv 34
                + +l  i  v + A lv++ s  AGv
  EHU01818.1 73 LCLLAGICIVQLCANLVAKPSQMAGV 98
                5667778889999************9 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6e-05
     PRD1_DD   8 lvtvltAiiGvAilAvlvs 26 
                 l+t++tA iG+ i+A  vs
  EHU01818.1 321 LLTMITATIGINIVANFVS 339
                 89***************99 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.44
     PRD1_DD  16 iGvAilAv...lvsrrsntAG 33 
                 iGvA+ A    lv+r+   AG
  EHU01818.1 464 IGVALAAScywLVAREKQVAG 484
                 899988743336777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3763.75
//
Query:       EHU01819.1  [L=240]
Description: GntR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-15   57.7   2.6    2.9e-15   56.8   2.6    1.5  1  FCD          FCD domain
    1.6e-15   56.5   0.5    3.4e-15   55.4   0.0    1.9  2  GntR         Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
       0.01   15.7   0.2      0.041   13.8   0.0    2.0  2  HTH_11       HTH domain
      0.033   14.1   0.0       0.31   10.9   0.0    2.4  3  TrmB         Sugar-specific transcriptional regulator TrmB
      0.051   13.3   0.0        1.1    9.1   0.0    2.5  2  HTH_DeoR     DeoR-like helix-turn-helix domain
       0.07   13.0   0.0       0.36   10.7   0.0    2.0  2  TFIIE_alpha  TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   2.6   9.7e-19   2.9e-15       1     124 [.      88     210 ..      88     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 9.7e-19
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslae 99 
                 d++ +R lLE+  +  + ++ ++ +la l++l+e+ +ea+a++d  +++++ +aFH  l +++gn+vl++l+++l++r   +++++  +p  +   +++
  EHU01819.1  88 DIFRTRSLLECGNLSAVLEHLQAPHLAGLTALVEQEKEAIARHDGPAAIRLSAAFHIQLQAISGNQVLTDLVTQLAQRSSLVIATW-GAPWQRGCRCDD 185
                 79******************************************************************************887765.69999999**** PP

         FCD 100 HraildAirardadaAraamrrHle 124
                 H ++l+ +r++d     a +++H+e
  EHU01819.1 186 HGQLLQRLREKDLVSLTASLQHHFE 210
                 ***********************98 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.1e-18   3.4e-15       3      64 .]      18      78 ..      16      78 .. 0.97
   2 ?   -3.3   0.1       2.4   7.3e+03      45      54 ..     190     199 ..     189     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.1e-18
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                e +y++L + I++ +l pG+kL +e++L++ fgVsrt +R++L+rL+a ++++  ++rG++V
  EHU01819.1 18 EPIYQALMNAIVEHQLPPGSKL-PEEALSEVFGVSRTGIRKVLQRLAAVQMITLTPKRGAHV 78
                569*******************.9***********************************998 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
                 HHHHHHTTSE CS
        GntR  45 LrrLeaeglv 54 
                 L+rL +++lv
  EHU01819.1 190 LQRLREKDLV 199
                 5677777776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-05     0.041      19      53 ..      42      75 ..      36      77 .. 0.82
   2 ?   -2.1   0.1       1.2   3.7e+03       4      14 ..     188     198 ..     188     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                e L+e ++vSr+ +r+ +++L +    I+ +p+rG
  EHU01819.1 42 EALSEVFGVSRTGIRKVLQRLAAVQ-MITLTPKRG 75
                78*******************8877.566666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
      HTH_11   4 qilelLlearg 14 
                 q+l++L+e++ 
  EHU01819.1 188 QLLQRLREKDL 198
                 68999977764 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.2   9.5e+03       6      19 ..      13      26 ..      10      28 .. 0.72
   2 ?   10.9   0.0    0.0001      0.31      26      56 ..      42      72 ..      36      89 .. 0.87
   3 ?   -0.4   0.0      0.36   1.1e+03      42      54 ..     189     201 ..     188     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.2
                HHHHCCCHCHHHHH CS
        TrmB  6 LseyEakvYlaLlk 19
                L + +  +Y+aL++
  EHU01819.1 13 LHDKDEPIYQALMN 26
                56667778888875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0001
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerek 56
                + ++e  gv+r+ + +vL++L    +++  +
  EHU01819.1 42 EALSEVFGVSRTGIRKVLQRLAAVQMITLTP 72
                679*******************999987665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.36
                 HHHHHHHCTSEEE CS
        TrmB  42 vLrsLedkGlVer 54 
                  L++L +k+lV  
  EHU01819.1 189 LLQRLREKDLVSL 201
                 59********975 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00036       1.1      18      44 ..      42      68 ..      35      72 .. 0.88
   2 ?    1.1   0.1      0.11   3.4e+02       2      19 ..     186     203 ..     186     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00036
    HTH_DeoR 18 eelvellgvSeaTiRRDLneLeeqgll 44
                e l+e +gvS + iR+ L+ L++  ++
  EHU01819.1 42 EALSEVFGVSRTGIRKVLQRLAAVQMI 68
                689****************99987666 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.11
    HTH_DeoR   2 ieqilellkqqgklsvee 19 
                 + q+l+ l++++ +s++ 
  EHU01819.1 186 HGQLLQRLREKDLVSLTA 203
                 689********9999876 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.36      26      60 ..      37      71 ..      23      81 .. 0.88
   2 ?   -0.9   0.0       0.5   1.5e+03      45      59 ..     187     201 ..     184     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
                 TSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEE CS
  TFIIE_alpha 26 gevteedlakelkidlnelrklLnrLyearlvkyk 60
                 +++ ee l++  ++ ++ +rk+L rL   +++   
   EHU01819.1 37 SKLPEEALSEVFGVSRTGIRKVLQRLAAVQMITLT 71
                 7899***********************99999765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.5
                  HHHHHHHHHCTSEEE CS
  TFIIE_alpha  45 rklLnrLyearlvky 59 
                  ++lL rL+e+ lv+ 
   EHU01819.1 187 GQLLQRLREKDLVSL 201
                  578999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1756.16
//
Query:       EHU01820.1  [L=243]
Description: hydantoin racemase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-10   41.7   1.8    1.6e-10   41.2   1.8    1.2  1  Asp_Glu_race   Asp/Glu/Hydantoin racemase
      7e-06   25.8   2.0    2.2e-05   24.2   0.7    2.0  2  Amdase         Arylmalonate decarboxylase
  ------ inclusion threshold ------
      0.037   13.7   0.1      0.037   13.7   0.1    2.2  3  PEP-utilizers  PEP-utilising enzyme, mobile domain
       0.07   12.7   0.9       0.36   10.4   0.1    2.2  2  AIRC           AIR carboxylase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   1.8   3.7e-14   1.6e-10       3     221 ..       6     209 ..       4     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.7e-14
                   ECSCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CC.S-TCHHHHHCH.T..THH.HHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEE CS
  Asp_Glu_race   3 gmgpeatlsvlrklveatpaesdqehlplivlndsa.ipdrteaieeesgddpvl.klleaakkLekagadaiviaCnTahavadelqkkikiPvlg 97 
                   +++p+ + ++++ + +a++a       ++i++  s+ +p +  +    +++ +++   le +k  +++g++  viaC+     + + ++ ++ Pv+g
    EHU01820.1   6 VINPNTSQAMTETIGHAARAVAA-LGTDIIAVCPSQgVPSIEGHF---DEA-IAAiGVLEQVKLGKAQGVSGHVIACFGD-PGLLAARELASGPVIG 96 
                   66777777777777777777774.456666666666688666666...334.45559***********************.**************** PP

                   CHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHH.TT-TTSHHHHHHHHHHHHHH.TTT-SEEEE-ST CS
  Asp_Glu_race  98 iveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelk.aGevteearrailkllerla.ergadaviLGCT 192
                   i+ea+++ +    + ++ +++ +   +  + ++ l++ +g+      ++++  ++ ai+ ++   ++  + a +++++ + +++ e+g+ a++LGC 
    EHU01820.1  97 IAEAAMHTATL-VATRFSIVT-TLPRTLVIARHLLQQ-YGF------THHCAALH-AIDLPVLaLEDGSGVAQEKVRQRCIQAKrEDGCGAIVLGCG 183
                   *****999966.778888887.577888888888888.599......67777775.89944443333333345555555555555************ PP

                   THHHHHHHHHHCC-TT.SEEEEHHHHHHH CS
  Asp_Glu_race 193 elplllekaealekeksvpvidptdilar 221
                    + +l  ++   +ke ++pvid +++ ++
    EHU01820.1 184 GMATLAASL---TKELEMPVIDGVSAAVK 209
                   ***996666...555579*******9997 PP

>> Amdase  Arylmalonate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.075   3.4e+02      23      53 ..       6      36 ..       3      39 .. 0.82
   2 !   24.2   0.7   4.9e-09   2.2e-05      98     208 ..     109     219 ..      83     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.075
      Amdase 23 elskegydevidrvveaArelaerGaqavsl 53
                 +++++ +++ + + +aAr+ a+ G++++++
  EHU01820.1  6 VINPNTSQAMTETIGHAARAVAALGTDIIAV 36
                5677777888999999999999999999986 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 4.9e-09
      Amdase  98 arRvAvataYidev...nerLvayLeesglevaalesLdiedveavakvtaeelvelgkkavaaapeadallisCGGLrtldvvreledelglpvvssa 193
                 a R  ++t+   ++    + L++y  ++  ++ +   L + ++e+ + v++e++ + + +a  +++ + a+++ CGG+ tl++  +l +el++pv+   
  EHU01820.1 109 ATRFSIVTTLPRTLviaRHLLQQYGFTHHCAALHAIDLPVLALEDGSGVAQEKVRQRCIQAK-REDGCGAIVLGCGGMATLAA--SLTKELEMPVIDGV 204
                 45555555555443111234566666666677777788899******************997.67789***********9986..68999******998 PP

      Amdase 194 lAGlwdavrlaglda 208
                  A +  + +l+ l  
  EHU01820.1 205 SAAVKMVESLVALGF 219
                 888877766666554 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.73   3.3e+03      39      50 ..      25      36 ..       8      49 .. 0.61
   2 ?   -2.8   0.0       1.2   5.5e+03      42      57 ..      86     101 ..      83     112 .. 0.61
   3 ?   13.7   0.1   8.3e-06     0.037      24      60 ..     175     210 ..     160     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.73
                   HHHHHHTT--EE CS
  PEP-utilizers 39 AivArelgiPaV 50
                   A+ A + +i aV
     EHU01820.1 25 AVAALGTDIIAV 36
                   344444444444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                    HHHTT--EEE--SSHH CS
  PEP-utilizers  42 ArelgiPaVvgvgeat 57 
                    Arel    V+g+ ea 
     EHU01820.1  86 ARELASGPVIGIAEAA 101
                    5666665566665554 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 8.3e-06
                    EEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH CS
  PEP-utilizers  24 aaGivterGGmtSHaAivArelgiPaVvgvgeatiel 60 
                    + +iv   GGm   aA + +el++P++ gv++a + +
     EHU01820.1 175 CGAIVLGCGGMATLAASLTKELEMPVIDGVSAAVK-M 210
                    689*****************************984.3 PP

>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       0.1   4.7e+02      69     107 ..      81     123 ..      74     164 .. 0.61
   2 ?   10.4   0.1     8e-05      0.36      45      87 ..     165     208 ..     155     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.1
                 HHHHHHHS..SS-EEEEEE--.STTCCHHHHHHHHT.--TTS- CS
        AIRC  69 pgvvaslt..tlPVigvPvks.kalkgldsllSivq.mPsgvp 107
                 pg++a+    + PVig+   + ++ + +   +Siv  +P+ + 
  EHU01820.1  81 PGLLAARElaSGPVIGIAEAAmHTATLVATRFSIVTtLPRTLV 123
                 5666665433678888876652233444444555531455554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 8e-05
                 HHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EE.EEEE-- CS
        AIRC  45 eyaeeaeerglkviIagAGgaahLpgvvaslttlPVi.gvPvks 87 
                 ++++  +e+g+ +i+ g Gg a L+  +    ++PVi gv    
  EHU01820.1 165 RCIQAKREDGCGAIVLGCGGMATLAASLTKELEMPVIdGVSAAV 208
                 5677788999***************************5565554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2053.42
//
Query:       EHU01821.1  [L=319]
Description: putative polysaccharide deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-10   40.0   0.0    6.3e-10   39.0   0.0    1.5  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.5e-14   6.3e-10      14     121 ..      86     192 ..      76     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3.5e-14
                      EESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGE CS
  Polysacc_deac_1  14 DdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlfryPygs 107
                      + g+r +  +i++ ++k +++ t+f +    +++pd+v +++++  ++ +H++ + +++   ++++r+++++a+d+l + +g+ p+ +   + +
       EHU01821.1  86 EYGSRAGFWRIHNEFQKRGLPLTVFGVAMALARHPDIVDAIKQAQYDVVSHGWRWIHYQCIDAKTERQHMQQAVDVLTDLFGKAPTGWYT-GRD 178
                      668899999**************************************************************************9998743.333 PP

                      E-HHHHHHHHHTT. CS
  Polysacc_deac_1 108 asatvlevarelgf 121
                        +t + v+++ gf
       EHU01821.1 179 SPNTRRLVVEQGGF 192
                      33333455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2349.31
//
Query:       EHU01822.1  [L=243]
Description: ribulose-5-phosphate 4-epimerase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-37  127.4   0.4    8.7e-37  126.9   0.4    1.3  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.4   4.9e-41   8.7e-37       2     185 ..      12     191 ..      11     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 4.9e-41
                  HHHHHHHHHHHTTSSCTTBCEEEEEET.STTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-.TTHHHHHHHHHH-TT-SEEEEE--HH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvp.eedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkps.setplHlaiykarpdaravvHtHspa 97 
                  +la+a+r++a++g+ e++++++S+ v+ ++++fl++p  ++f++l+a+dl++++++ +++  g e++  +   ++ +H +i+++ p+ r+v+H+H+ +
   EHU01822.1  12 DLAAAFRIIAHLGMHEAVANHFSAAVSpDGKQFLMNPKWKHFSRLRASDLLLLNAE-DTAC-G-ERDD-VDaTAWSIHGQIHQRLPETRVVMHLHPVY 105
                  69**********************9766899***********************98.6777.5.3333.55588************************ PP

                  HHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SS..TTCHHHHHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Aldolase_II  98 avalsalagkeglppltqeaaklllgdevpvipyaa..pgteelgealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiq 185
                  ++ +++la +  +pp++q++a+ ++ ++++v   +    +t+e g++la+ l  d++ +l+ nHG++++++t+ eA++ ++tle+a++i 
   EHU01822.1 106 TTSVACLA-QPHIPPVDQNSAR-YF-NRIAVDTLYGgmADTQEEGARLASLLT-DKRRLLMGNHGVMVTAQTVGEAYDDIWTLERACQIL 191
                  *****987.688**********.54.457773333322477888********7.99********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1888.51
//
Query:       EHU01823.1  [L=271]
Description: extracellular solute-binding protein, family 3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-39  135.2   0.0    2.6e-39  135.0   0.0    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
     0.0028   17.3   0.0     0.0043   16.7   0.0    1.2  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
  ------ inclusion threshold ------
      0.029   14.6   0.1      0.076   13.2   0.1    1.7  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   4.4e-43   2.6e-39       1     222 [.      30     254 ..      30     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 4.4e-43
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 ++ g+d ++ P++y++ +++++Gfd+++++ +ak +g +   +++ + +li++l+s+++Di  ++++it++R +++d+  py+++g+++l  k+++   
  EHU01823.1  30 IIAGSDMTFFPYEYMK-DNKPAGFDIEFLDGLAKVMGRQAVNIDTRFPNLITGLQSNRFDITNSSMYITADRMKVIDMI-PYLKSGEAILSLKGSD--- 123
                 57899***********.*********************9555559**********************************.9***********8643... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC........TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk........gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaia 190
                  + k+++d++g k+g + +++  ++l +   +         + i e+ t+++ +qa  +  v+a ++d +v++++v+k +d   + ++  +++   +++
  EHU01823.1 124 YQPKTPEDFCGHKIGSMGATSWLQQLHKLSDDycvkngkpPIAISEYSTDPQTTQAMLSHAVEAQITDAAVARGVVQKLGDRIQISSTTLIYPVLNGFG 222
                 6788889**************998888744446777777799999*****************************************9************ PP

                 EETTTHHHHHHHHHHHHHHHHTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 191 vrkgdseLrkainkalaelkadgtlakisekW 222
                 v+k+++e +ka+ +ala   ++ ++a++ +k+
  EHU01823.1 223 VKKDNTEVKKALVAALATFSKTPEYAALLKKY 254
                 ******************************** PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.2e-07    0.0043      39     233 ..      75     257 ..      55     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.2e-07
                     HHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--..SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT CS
  Phosphonate-bd  39 yaavvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiq..sledLkgktiafvspsStsGylvpaalLvkeag 131
                     +  ++ +l++++ Di  ++++ y+ a++ + ++ +   ++         +i+  ++sd+q  + ed+ g++i+ + ++S   +l +++ L++++ 
      EHU01823.1  75 FPNLITGLQSNRFDI--TNSSMYITADRMKVIDMIPYLKS-------GEAILSLKGSDYQpkTPEDFCGHKIGSMGATS---WLQQLHKLSDDYC 157
                     666777777777776..56666777766664444444443.......347788888988776899******99998776...99******99988 PP

                     --HHHHSSEE.EE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEEEEEEEEE-.-EEEEETTS-HHHHHHHHHHHHH---SHHHH CS
  Phosphonate-bd 132 ldpeddfsev.fsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrviassppipn.dpvvvrkelseelkekiqdallslaeteegk 224
                     ++ ++   +    ++ +++ +a ls+ ++a  ++a +++ +v++     d++++  ++  +p   ++ v+k+   e+k+++ +al ++++t+e  
      EHU01823.1 158 VKNGKPPIAIsEYSTDPQTTQAMLSHAVEAQITDAAVARGVVQK---LGDRIQISSTTLIYPVlNGFGVKKD-NTEVKKALVAALATFSKTPEYA 248
                     8888854333366789999**********************998...6899999888888864267777777.5679****************** PP

                     HHHHHTTEE CS
  Phosphonate-bd 225 kllealgie 233
                     +ll+++++e
      EHU01823.1 249 ALLKKYHFE 257
                     *****9886 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05     0.076      66     111 ..      74     118 ..      47     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                      EB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEE CS
  Lig_chan-Glu_bd  66 ewnGmigellekkadlavapltitaeReevvdFtkpfmelgisili 111
                      +   +i  l +++ d++ +++ ita+R +v+d   p++++g +il 
       EHU01823.1  74 RFPNLITGLQSNRFDITNSSMYITADRMKVIDM-IPYLKSGEAILS 118
                      55668999999*********************7.69*999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2156.65
//
Query:       EHU01824.1  [L=290]
Description: phytanoyl-CoA dioxygenase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-27   95.3   0.8    7.3e-27   95.0   0.8    1.1  1  PhyH      Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.8   4.1e-31   7.3e-27       1     210 [.      10     224 ..      10     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 4.1e-31
                 HHHHSEEEETTSS-HHHHHHHHHHHHHH......HHHCHTTCCSEEEEECEEESTTCCCEE...CCCHHCHHHHTTH....HHHHHHHHHHHTSCEEEE CS
        PhyH   1 feedGylviegflsaeevealraeieal......ldralesgdkidfffeekaaadedgll...eksinkvghflhp....rkvadlvrailgqdvyva 86 
                 ++++G+lv+e++l+ +e++al+ ++++        ++ + ++++ ++ f+ + + ++d++     +s+n ++ +  +     ++a+++ +++g   +  
  EHU01824.1  10 YHQQGFLVVENVLTSDEIAALQHDFDQWveesrsQNAPWGDTQDGRPRFDIESDHRADHPSlrrVSSPNDISAAYRHaalqSRMAQIAGQLIGGSGA-- 106
                 89*************************9776666555666666666666555555555555566333333333322212223444444444444443.. PP

                 EEEEEEEEEEEE-TTTCB-EEEEE-SGGGSTEESGCCEEEEEEESS-B-TTBT-EEEETTGGGS-CCGTCCHHCSGCCTTS.CCCTTTGHGSCEEEE.B CS
        PhyH  87 avlqsmyqdifkqpkiGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae.ddeakkedeeeavpvev 184
                 + ++s +  + k p++ ++v  wHqD  f p   ++ +v++ +++ ++t+enG+l ++PGSH+ +++    +++  +++   d  + ke+ ++  ++  
  EHU01824.1 107 RYHHSKI--NSKLPHTATKV-EWHQDFLFTPHS-NDDIVTALLMVSEVTPENGPLNVVPGSHQGPVYS---HWQGGRFTGAvDPAVVKEQCQQPTACFG 198
                 5678888..***********.*********966.6*****************************8885...4444444444666777777777778889 PP

                 TTTEEEEEETTSEEEE-TB.SSSXEE CS
        PhyH 185 kaGdavlfhgrllHgsgaNrsdksRr 210
                   G++ ++h rllH+s++N ++ +R+
  EHU01824.1 199 PSGSVCFMHTRLLHASSPNETEWPRT 224
                 *********************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2311.68
//
Query:       EHU01825.1  [L=507]
Description: membrane component of an ABC superfamily polar amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-34  117.3   0.0      1e-33  116.7   0.0    1.3  1  ABC_tran      ABC transporter
    2.5e-22   79.5  13.4    4.6e-22   78.6  13.4    1.4  1  BPD_transp_1  Binding-protein-dependent transport system inne
    8.4e-13   48.8   0.0      3e-06   27.3   0.0    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    3.1e-07   30.1   0.3    9.8e-06   25.2   0.3    2.2  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00068   19.6   0.1     0.0016   18.4   0.1    1.6  1  RsgA_GTPase   RsgA GTPase
     0.0015   18.9   0.1     0.0039   17.6   0.1    1.8  1  AAA_16        AAA ATPase domain
      0.002   17.9   0.0     0.0047   16.6   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0057   16.9   0.0      0.014   15.7   0.0    1.6  1  AAA_22        AAA domain
     0.0066   15.3   0.2       0.84    8.3   0.1    2.9  2  ABC_ATPase    Predicted ATPase of the ABC class
  ------ inclusion threshold ------
      0.011   14.4   0.0        2.7    6.5   0.0    2.1  2  AAA_13        AAA domain
      0.016   15.3   0.1      0.037   14.2   0.1    1.8  1  AAA_33        AAA domain
      0.027   14.8   4.4      0.027   14.8   4.4    1.9  2  DUF4212       Domain of unknown function (DUF4212)
      0.029   14.2   0.5       0.86    9.3   0.0    2.6  3  ATP_bind_1    Conserved hypothetical ATP binding protein
      0.041   14.3   0.0          1    9.8   0.0    2.3  2  AAA           ATPase family associated with various cellular 
       0.05   14.1   0.0      0.086   13.4   0.0    1.4  1  AAA_18        AAA domain
      0.051   13.3   0.1       0.24   11.1   0.0    2.0  2  AAA_30        AAA domain
      0.096   12.6   0.0       0.18   11.7   0.0    1.4  1  Rad17         Rad17 P-loop domain
       0.15   10.9   0.0       0.22   10.3   0.0    1.1  1  DLIC          Dynein light intermediate chain (DLIC)
       0.18   11.6   0.0       0.43   10.3   0.0    1.6  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
       0.21   11.8   0.0       0.47   10.7   0.0    1.6  1  AAA_28        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   1.2e-36     1e-33       3     137 .]     275     431 ..     273     431 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 1.2e-36
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG............B-HHHCCHCEEEE-SS--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke............qeleslrkeigvlpqepqlfpeltvren.......... 79 
                  v+l++++ge+v ++G++G+GK+tL++ll gl++ ++Gei+++gk++ +             e+ + r +ig+++q  +lf++l+v +n          
  EHU01825.1 275 AVNLQIHPGEVVSVIGPSGSGKTTLIRLLNGLEQIDNGEIRINGKPFIHlsqqgeqrkprfVEHAEHRLNIGMVFQSFNLFSHLSVMDNlllapryhkl 373
                 69********************************************999999*****9999999999******************************** PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                       +++++++l k+g+ + +     + p++LSgGq+qrva+aral+ +p+++l+DEpt+
  EHU01825.1 374 apaaVLKQQAAALLFKVGMLDHAW----KYPHQLSGGQQQRVAIARALMMRPQIMLFDEPTS 431
                 999999999999999999988444....456*****************************96 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6  13.4   5.2e-25   4.6e-22       2     181 ..      36     218 ..      35     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 5.2e-25
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf....vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   i++G+++a    +r+  l+   r++i +++slP +vl+i+++ +     + +++l + +++++i+l++   +y+  i+r++l ++pk++ eaaralG
    EHU01825.1  36 IIAGFILAlakQSRHPLLTLPARFYIWLFRSLPLLVLLIFVYNLPqalpATSTVLSDPFWAGFIALTMCESAYIAEIHRGGLLAIPKGQSEAARALG 132
                   7899****9999************************9999876559999999********************************************* PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   +++  i +++++P+al+++++ l++  +++++ ++l++ +     l+  l+  +  y  ++  + +++a++++++l+++v+d+l + l++
    EHU01825.1 133 LRYAGIQWRIIIPQALRVALPALANEYIAIVKLTSLVSVIS----LTEILMVGQRLYSQNFLVMETMAAVAFYYVLIVTVFDFLLKQLER 218
                   *****************************************....***9999999999999999*********************99987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.2e-07   0.00083       4      36 ..     288     320 ..     285     346 .. 0.75
   2 !   27.3   0.0   3.4e-09     3e-06     234     298 ..     400     461 ..     369     464 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.2e-07
      AAA_21   4 liGpNgsGKSnLLdaldllarldrdvegltdel 36 
                 +iGp gsGK++L+++l +l ++d+  ++ + ++
  EHU01825.1 288 VIGPSGSGKTTLIRLLNGLEQIDNGEIRINGKP 320
                 8******************77655555554444 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 3.4e-09
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 +++lS G+++  a++ al  ++    + l+DEp + L+P+ + ++l+++++l+++g+  +++TH 
  EHU01825.1 400 PHQLSGGQQQRVAIARALMMRP---QIMLFDEPTSALDPEKVNEVLQVIEALASEGITMVIVTHE 461
                 6899****999999999**999...9**************************99**********5 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.3   1.1e-08   9.8e-06      25     209 ..     284     473 ..     265     481 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.....BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.....skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                 ++ +++Gp GSGK+ l+  +   L + ++ ++r +  +  ih      +++ ++v++ae  + +    ++     +++s++ ++    +  +k+    v
  EHU01825.1 284 EVVSVIGPSGSGKTTLIRLL-NGLEQIDNGEIRIN-GKPFIHLsqqgeQRKPRFVEHAEHRLNIGMVFQS-FNLFSHLSVMDNLLLAPR-YHKLAPAAV 378
                 46789999999999999877.56666666688875.4667776232333333444444433333222222.222344555555555555.667777777 PP

                 -HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SCEE CS
                 xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 119 tkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dklv 209
                  k++ + ll ++g+  +      +LSgG+++ va+a      +++p+ ++l+De  +aLD ++v++v +++++  ++   +++++++ ++  k+ d++v
  EHU01825.1 379 LKQQAAALLFKVGMLDHawkyphQLSGGQQQRVAIARA---LMMRPQ-IMLFDEPTSALDPEKVNEVLQVIEALASEgITMVIVTHEMNFAFKVsDRIV 473
                 77777777777776555566666********9999866...456666.789*********************876664888888998876544425554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.8e-06    0.0016      57     131 ..     237     315 ..     184     320 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.8e-06
                  GG--HHHHHHHHHHHHHHTTSEEEE--TTTH....TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  57 Dlleeeeeleelkeelealgyevllvsaktk....egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +l++++  ++ ++++++a g ++ +++ ++     e l +++ +++  +++ ++G+SG GK+tLi  l++ +++  ge++
   EHU01825.1 237 ELAQRAA-VNPVRQAFHASGPALQALRLHKAynnvEVLGAVNLQIHPgEVVSVIGPSGSGKTTLIRLLNGLEQIDNGEIR 315
                  5555555.55666666666555544444332211144445555666669999******************9999999997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.4e-06    0.0039      25      46 ..     284     305 ..     271     462 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.4e-06
      AAA_16  25 elvllsGesGvGKsslvrellr 46 
                 e+v ++G+sG+GK++l+r l  
  EHU01825.1 284 EVVSVIGPSGSGKTTLIRLLNG 305
                 899**************99873 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06    0.0047      15      39 ..     276     300 ..     262     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.3e-06
      AAA_29  15 htieidlkgatlltGpsGsGKSTll 39 
                   ++i++ +++ ++GpsGsGK+Tl+
  EHU01825.1 276 VNLQIHPGEVVSVIGPSGSGKTTLI 300
                 678999999***************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-05     0.014       7      31 ..     285     309 ..     280     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqlde 31 
                 ++ v+G+sG+GKTtl+r l    ++
  EHU01825.1 285 VVSVIGPSGSGKTTLIRLLNGLEQI 309
                 6789*************99776554 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.067        60     240     264 ..     278     303 ..     243     308 .. 0.79
   2 !    8.3   0.1   0.00094      0.84     324     413 ..     404     477 ..     399     489 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.067
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 + i  G v+ ++G+   GK+TL++ l
  EHU01825.1 278 LQIHPGeVVSVIGPSGSGKTTLIRLL 303
                 45777889**************9865 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00094
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                 SG   q ++i++al ++ +++L+DE tsA                + e ++ +++ ++ l ++ g+++++v+  ++  ++v+d+++ me+
  EHU01825.1 404 SGGQQQRVAIARALMMRPQIMLFDEPTSAL---------------DPEKVNEVLQVIEAL-ASEGITMVIVTHEMNFAFKVSDRIVFMEK 477
                 677777777777777777777777777773...............355577777778777.77899999999999999999999999986 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0052       4.6      23      52 ..     290     313 ..     282     360 .. 0.81
   2 ?    6.5   0.0     0.003       2.7     526     580 ..     420     471 ..     412     480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0052
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfangs 52 
                 G  G+GKTtL rll+ le+        ng+
  EHU01825.1 290 GPSGSGKTTLIRLLNGLEQID------NGE 313
                 788*************97533......333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.003
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                   +i  +D P S LD + ++ v   i++ +  ++ +  + i TH ++f  +v+++
  EHU01825.1 420 RPQIMLFDEPTSALDPEKVNEVLQVIEALA--SEGIT-MVIVTHEMNFAFKVSDR 471
                 67899************************9..66666.5677*****98777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   4.1e-05     0.037       1      19 [.     285     303 ..     285     471 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
      AAA_33   1 lvllvGlpGsGKstlaerl 19 
                 +v ++G++GsGK+tl++ l
  EHU01825.1 285 VVSVIGPSGSGKTTLIRLL 303
                 7889***********9976 PP

>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   4.4     3e-05     0.027       3      67 ..      16      79 ..      14      82 .. 0.88
   2 ?   -2.2   0.4       6.5   5.8e+03      57      72 ..     201     216 ..     188     222 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
     DUF4212  3 aYwrenlrlililLviWfvvsfglgillaeelntirtflgfplgFwfaaqgsilvfvvlifvYal 67
                 +w ++ ++i + L+ W    +  g +la + ++ + +l++p  F++    s+   v+lifvY+l
  EHU01825.1 16 TFWLATWTVIKLSLLTWGTSIIA-GFILALAKQSRHPLLTLPARFYIWLFRSLPLLVLLIFVYNL 79
                69***************987777.7777766667778**************************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.5
     DUF4212  57 vfvvlifvYalrmdrl 72 
                  +v+++ v+  + ++l
  EHU01825.1 201 YYVLIVTVFDFLLKQL 216
                 2344444444444444 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.15   1.3e+02     140     192 ..     183     231 ..     161     263 .. 0.78
   2 ?    9.3   0.0   0.00096      0.86       1      17 [.     288     304 ..     288     314 .. 0.87
   3 ?   -2.3   0.0       3.5   3.2e+03     110     137 ..     440     467 ..     423     477 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.15
  ATP_bind_1 140 kfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealslllek 192
                  + s+ ++ + +m+ +   +v +++ fD l     k+le++ dv + +   + 
  EHU01825.1 183 RLYSQNFLVMETMAAVAFYYVLIVTVFDFLL----KQLERYLDVTQRQPSGKP 231
                 556777899999*****************88....888888888777765554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00096
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 v+Gp GsGKtt+++ l+
  EHU01825.1 288 VIGPSGSGKTTLIRLLN 304
                 89**********98776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.5
  ATP_bind_1 110 slakiveeLesefalvvvyLvDsqrltd 137
                 +  +++e+L+se+ ++v++  + +++ +
  EHU01825.1 440 EVLQVIEALASEGITMVIVTHEMNFAFK 467
                 4455888888888888887777777655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0012         1       3      21 ..     288     306 ..     286     352 .. 0.64
   2 ?    2.1   0.0      0.27   2.4e+02      40     112 ..     401     462 ..     372     472 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
                 EESSTTSSHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake 21 
                 ++Gp G GKT+l++ +   
  EHU01825.1 288 VIGPSGSGKTTLIRLLNGL 306
                 79************98654 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.27
                 THHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  40 gesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrp 112
                  + +   ++ ++ a++   +p i+++DE  +    +           vn+ l++++ + ++   ++++++t+++
  EHU01825.1 401 HQLSGGQQQRVAIARALMmRPQIMLFDEPTSALDPE----------KVNEVLQVIEALASE--GITMVIVTHEM 462
                 5555555555555555556799*****987776665..........488888888888883..47777777665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.6e-05     0.086       3      25 ..     288     318 ..     286     376 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.6e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgf........g 25 
                 + G++G+GKttl + L+ ++++        g
  EHU01825.1 288 VIGPSGSGKTTLIRLLNGLEQIdngeirinG 318
                 89**************766555555555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027      0.24      18      43 ..     283     308 ..     274     328 .. 0.80
   2 ?   -1.1   0.0       1.4   1.3e+03      73     114 ..     394     447 ..     365     459 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
      AAA_30  18 drvavltGpAGtGKttalkalreawe 43 
                   v+ + Gp G+GKtt+++ l+ + +
  EHU01825.1 283 GEVVSVIGPSGSGKTTLIRLLNGLEQ 308
                 4588999************9976655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
      AAA_30  73 iakllkrlk...........grarlepgtllivDE.agmvdtkqlaallkaaek 114
                  + + + ++           +ra + + ++++ DE ++ +d ++++++l+ +e+
  EHU01825.1 394 DHAWKYPHQlsggqqqrvaiARALMMRPQIMLFDEpTSALDPEKVNEVLQVIEA 447
                 334444444556666777775556666688888994455688888888777765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.18      33      91 ..     271     330 ..     256     374 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
       Rad17  33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklre.wlnpvslkepdnqksd 91 
                 e l a  L+ ++ +++ + GPsG gk+t ++ L     i+  e  +n+  + + + q ++
  EHU01825.1 271 EVLGAVNLQIHPGEVVSVIGPSGSGKTTLIRLLNGLEQIDNGEiRINGKPFIHLSQQGEQ 330
                 578888899999999*****************9876655554424666666555555554 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024      0.22      24      54 ..     282     312 ..     269     332 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00024
        DLIC  24 sgksvlvlGedgsGkttliaklqGveeekkG 54 
                  g  v v+G +gsGkttli  l G+e+   G
  EHU01825.1 282 PGEVVSVIGPSGSGKTTLIRLLNGLEQIDNG 312
                 567799********************98877 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00048      0.43       4      25 ..     286     307 ..     284     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00048
   PduV-EutP   4 illiGkvgsGKttLtqalkgee 25 
                 + +iG++gsGKttL + l+g e
  EHU01825.1 286 VSVIGPSGSGKTTLIRLLNGLE 307
                 568***************9965 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00052      0.47       2      20 ..     286     304 ..     285     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 + ++G++++GKTtl++ L+
  EHU01825.1 286 VSVIGPSGSGKTTLIRLLN 304
                 669************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 3571.09
//
Query:       EHU01826.1  [L=50]
Description: hypothetical protein CKS_0274 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 388.30
//
Query:       EHU01827.1  [L=301]
Description: Cys regulon transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-32  111.5   0.0    4.5e-32  111.1   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    5.4e-19   67.9   0.1    9.9e-19   67.1   0.1    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.01   16.1   0.0      0.016   15.5   0.0    1.2  1  LNP1            Leukemia NUP98 fusion partner 1


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   7.5e-36   4.5e-32       4     207 ..      93     295 ..      90     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 7.5e-36
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLargepvs 97 
                      +g++ +g+ +++a+  +p+l+a f+++yP++++el  g+++el  +l++g++Dla++++ + d+ ++ + L    + +++++ +hpLa++  v+
      EHU01827.1  93 ISGTIAVGCFESAAPLYMPKLIAGFKKHYPDITIELYDGEQHELMHGLHRGRFDLAFLYDLELDNTIQKTTLNaPHKPYVLLPVNHPLAQKSLVT 187
                     69********************************************************************99779******************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCC.HTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdel.adgrlvalplpepplp.relylvyrkg 190
                     l++L +ep+ill+   + r ++ + ++++g +p+va+++ s+e+++ +v  GlG+++l +  + d   +  +l  +++++ +++ ++l +++ ++
      EHU01827.1 188 LRELSQEPMILLD-AVPSRNYFINIFKSKGYHPQVAYSSPSIEMVRCMV--GLGFSVLVTRPCTDVTyDGEKLAQIDIED-DMEaSTLIMAWLSH 278
                     ***********88.7889999999************************9..56666655555545443666788899999.************** PP

                     CCCHHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflrea 207
                      e+++ ++ f+d+++++
      EHU01827.1 279 NEPTRPTKLFMDYCQNS 295
                     *************9876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.1   1.7e-22   9.9e-19       1      60 []       6      66 ..       6      66 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.7e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSS.EEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgr.glrLTeaGe 60
                l+qlr+fvav++++s+++A ++L+++qp++s +ik+LE++++++L++R++  g++LT+ G+
  EHU01827.1  6 LKQLRYFVAVVKTESIAEASRQLHIAQPSISVSIKNLEDAFDQQLLIRHHAqGVSLTPGGR 66
                68**********************************************77547*****996 PP

>> LNP1  Leukemia NUP98 fusion partner 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   2.6e-06     0.016      95     154 ..      22      83 ..       9      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
        LNP1  95 adssfkepleskkRshsiqefsesfeqqLclrtk.rsvslepesrke.rrereklrlesrsh 154
                 a+ s +  + + + s si+++ + f+qqL++r   + vsl p +r+   + +e lrl  + +
  EHU01827.1  22 AEASRQLHIAQPSISVSIKNLEDAFDQQLLIRHHaQGVSLTPGGRRFyEKAQELLRLTHEFE 83 
                 45566677778888999***************86268******9985145566666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2646.86
//
Query:       EHU01828.1  [L=421]
Description: putative monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-28   99.7   0.0      3e-27   95.7   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.1e-11   42.4   0.0    1.2e-10   40.5   0.0    1.8  2  FMO-like       Flavin-binding monooxygenase-like
    3.2e-11   43.0   0.0    5.5e-11   42.2   0.0    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.2e-11   42.6   0.0      5e-10   39.1   0.0    2.4  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    1.5e-07   31.0   1.0    0.00073   18.9   0.0    2.3  2  FAD_binding_3  FAD binding domain
    9.2e-06   25.7   1.5      0.065   13.2   0.3    3.4  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00019   20.2   0.2        1.8    7.1   0.1    3.1  3  HI0933_like    HI0933-like protein
    0.00023   20.3   1.3       0.43    9.6   0.0    2.6  3  Lycopene_cycl  Lycopene cyclase protein
    0.00036   19.7   0.0        1.2    8.2   0.0    3.3  3  GIDA           Glucose inhibited division protein A
     0.0017   18.5   0.1        1.7    8.9   0.0    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0025   17.4   5.5        4.5    6.7   0.2    3.4  3  DAO            FAD dependent oxidoreductase
     0.0027   18.2   0.0       0.12   12.9   0.0    2.6  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0038   16.5   0.1        1.5    8.0   0.0    2.3  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.019   14.1   2.9        2.7    7.0   0.3    3.1  3  FAD_binding_2  FAD binding domain
      0.038   14.2   0.1          3    8.1   0.0    2.3  2  TrkA_N         TrkA-N domain
      0.065   13.3   0.0        7.2    6.7   0.0    2.3  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
       0.12   12.1   0.0       0.42   10.3   0.0    1.9  2  ApbA           Ketopantoate reductase PanE/ApbA
       0.15   11.4   0.0         17    4.7   0.0    2.5  3  ThiF           ThiF family
       0.21   10.9   0.0          4    6.6   0.0    2.1  2  Malic_M        Malic enzyme, NAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   3.2e-30     3e-27       1     193 [.      11     197 ..      11     212 .. 0.87
   2 ?    1.3   0.0      0.17   1.6e+02     261     287 ..     340     364 ..     329     380 .. 0.71

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 3.2e-30
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpi 98 
                  ++iGaG aG+a+  +l ++g+  +++lEk++i ++++   +   ++    ++  +      ++++++ p     +  + ++++++Y+++++++ e p+
   EHU01828.1  11 LVIGAGQAGIAMSEHLGRLGI-PHCVLEKNRIAEAWRTR-RWDSLVA---NGPAWHDRFPGMTFPGQDP-----DSFVPKEQIADYFEAYVQHIEAPV 98 
                  69*******************.689**********9874.4444444...2344444444457788888.....57788999**************** PP

  Pyr_redox_3  99 klfeeVesvkk..edegfevetsketyeAkkviiAtGefdkPnklnipGeek..lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtv 192
                  k+  eV sv +   ++gf v+ts + + A++v++AtG f+kP  + i   +   ++ h++ +++++++ +  v+ViG++ S+v +A el r+g++V +
   EHU01828.1  99 KTGVEVISVVPrvGRSGFDVSTSAGPIVARRVVVATGPFQKPVIPTIAPTDTrfTQLHSADYRNPQQLPEGGVLVIGAGSSGVQIADELQRAGKDVWL 196
                  *********99555899******************************9998656799***************************************87 PP

  Pyr_redox_3 193 v 193
                   
   EHU01828.1 197 S 197
                  6 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
  Pyr_redox_3 261 vvlatGykpdlsflkkslfeldedgrp 287
                   + atGy  d++ lk + f+  e++ p
   EHU01828.1 340 LIWATGYATDYTWLKVNAFD--EKNSP 364
                  57888888888888855554..34444 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.3e-13   1.2e-10      47     213 ..      43     198 ..      12     202 .. 0.89
   2 ?   -0.9   0.0      0.43     4e+02     320     338 ..     336     354 ..     331     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.3e-13
    FMO-like  47 eeGrasiyksvvsnsskemscfsdfplpedyp.nflhnsklleylklfakefdllkyiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmv 144
                 e  r++ + s+v+n       f+ + +p + p  f++++++ +y++++ ++ +       kt v  +   p +  sG ++v t         v   v+v
  EHU01828.1  43 EAWRTRRWDSLVANGPAWHDRFPGMTFPGQDPdSFVPKEQIADYFEAYVQHIEA----PVKTGVEVISVVPRVGRSG-FDVSTSAGP----IVARRVVV 132
                 5567888999999999999999999999877736*****************985....689999999999****999.899998754....5777899* PP

    FMO-like 145 ctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllst 213
                  tG + +p +p  + p   +f    +hs dy++p+ + +  vlviG G sg +ia el r+ ++v ls 
  EHU01828.1 133 ATGPFQKPVIPTIA-PTDTRFT--QLHSADYRNPQQLPEGGVLVIGAGSSGVQIADELQRAGKDVWLSV 198
                 ***********865.8888885..79***************************************9995 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.43
    FMO-like 320 didvvifatGytfafpfle 338
                 +i  +i+atGy+ ++ +l+
  EHU01828.1 336 GITTLIWATGYATDYTWLK 354
                 68899**********9986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   5.9e-14   5.5e-11       2     169 ..       9     195 ..       8     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 5.9e-14
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...........TTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHC..CTCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxx..xxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...........legtclnggcllskallgvaedaeias.........evvkklnqgielllg..eevvk 77 
                  d +viG+G AG+a++++l++ g+   ++e           + + ++ +g+  +  + g+  +++            + ++ + q+ie   +  +ev++
   EHU01828.1   9 DTLVIGAGQAGIAMSEHLGRLGIPHCVLEknriaeawrtrRWDSLVANGPAWHDRFPGMTFPGQDPDsfvpkeqiaDYFEAYVQHIEAPVKtgVEVIS 106
                  789*********************9999866666666666666667777777776666666665444899**98884444444554433332255888 PP

                  EEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  78 idpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevt 169
                  + p  ++     +++ +   i + ++v+AtG  + ++ ip  a++ +++   l+sa++ + ++lp   ++v+G+G  Gv +A +l ++gk+v 
   EHU01828.1 107 VVPRVGRSGF--DVSTSAGPIVARRVVVATGPFQ-KPVIPTIAPTDTRF-TQLHSADYRNPQQLPeGGVLVIGAGSSGVQIADELQRAGKDVW 195
                  8876655555..34455669***********544.44588888888888.99*************899**********************996 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.39   3.7e+02     190     210 ..       6      26 ..       2      38 .. 0.80
   2 !   39.1   0.0   5.3e-13     5e-10      92     216 ..      77     193 ..      72     204 .. 0.88
   3 ?   -2.7   0.0       2.6   2.4e+03     229     258 ..     358     387 ..     349     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.39
  K_oxygenase 190 akkriaVvGsGqSaaeifedl 210
                  ++ + +V+G+Gq +  + e+l
   EHU01828.1   6 QETDTLVIGAGQAGIAMSEHL 26 
                  667789******997776665 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 5.3e-13
  K_oxygenase  92 lpsRkefedYlrWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevleklegkervvHsseylerkee 187
                  ++++++ +dY +  ++++e  v+ g ev +v p+  +  + ++v++     ++  + ar++v+++G  ++p iP+++ + + + + +Hs++y + +  
   EHU01828.1  77 FVPKEQIADYFEAYVQHIEAPVKTGVEVISVVPRVGR--SGFDVST-----SAGPIVARRVVVATGpfQKPVIPTIAPTDT-RFTQLHSADYRNPQ-- 164
                  678888999***********9***********99976..67****8.....6789***********999*******99877.68999999998876.. PP

  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkk 216
                  +l +  ++V+G+G S+ +i+++l r  k+
   EHU01828.1 165 QLPEGGVLVIGAGSSGVQIADELQRAGKD 193
                  8999******************9998765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.6
  K_oxygenase 229 eplddspfvneifsPeyvdyfyslpeekre 258
                  +   +sp+ +  +sPe   yf+ lp + r+
   EHU01828.1 358 FDEKNSPLHQRGVSPESGLYFFGLPWQSRR 387
                  55678999999**************99886 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.8e-07   0.00073       1      34 [.       7      40 ..       7      47 .. 0.94
   2 !   10.5   0.3   0.00027      0.25       4      28 ..     171     195 ..     168     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.8e-07
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   etd+l++GaG aG+  +  L + G+ ++++ek +
     EHU01828.1  7 ETDTLVIGAGQAGIAMSEHLGRLGIPHCVLEKNR 40
                   699****************************976 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00027
                    EEEE--SHHHHHHHHHHHHTTHHEE CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvv 28 
                    Vl++GaG +G+  a +L++aG +v 
     EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDVW 195
                    9********************9986 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   6.9e-05     0.065      82     155 ..      69     136 ..      11     137 .. 0.73
   2 ?    4.5   0.0     0.034        32       2      19 ..     173     190 ..     172     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
  NAD_binding_9  82 aeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgq.avlladgaslaadaVvLAlGh 155
                     ++ dpd+fvp+  + +Y++++++++ a ++ gv       ev+++ +r ++    + ++   + a++Vv+A+G 
     EHU01828.1  69 FPGQDPDSFVPKEQIADYFEAYVQHIEAPVKTGV-------EVISVVPRVGRSgFDVSTSAGPIVARRVVVATGP 136
                    467899*********************9988765.......5555555544432334788889999999999995 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
  NAD_binding_9   2 ivGaGprGlavlerLlar 19 
                    ++GaG +G+ ++++L + 
     EHU01828.1 173 VIGAGSSGVQIADELQRA 190
                    8************99775 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0036       3.4       2      33 ..       9      40 ..       8      44 .. 0.91
   2 ?    2.9   0.0     0.039        37     109     164 ..      81     136 ..      55     144 .. 0.81
   3 !    7.1   0.1     0.002       1.8       3      28 ..     171     196 ..     170     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0036
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d++viG+G AG+  ++++++ g    +lek++
   EHU01828.1  9 DTLVIGAGQAGIAMSEHLGRLGIPHCVLEKNR 40
                 789******************99999999985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHHHHT-EEE-S--EEEE.ECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 109 edivdallkelkeagvklrletevksv.ekeedgkfrvktkseeeleadklvlAtGG 164
                  e+i d +++ +++ +  +++  ev sv  +   + f v+t s++ + a+++v+AtG 
   EHU01828.1  81 EQIADYFEAYVQHIEAPVKTGVEVISVvPRVGRSGFDVST-SAGPIVARRVVVATGP 136
                  5788888888888999999999988874344455599999.9*************95 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.002
                  EEEE--SHHHHHHHHHHHHTT--EEE CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVll 28 
                  v+viG+G +G+  A +++++gk+V l
   EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDVWL 196
                  89*********************987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00046      0.43       1      32 [.       9      38 ..       9      53 .. 0.88
   2 ?   -1.8   0.1       1.3   1.2e+03     129     144 ..     124     139 ..      91     152 .. 0.72
   3 !    8.9   0.1   0.00073      0.69       2      36 ..     171     204 ..     170     229 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00046
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvliea 32
                   D +viGaG Ag+++ ++l   + g+  +++e 
     EHU01828.1  9 DTLVIGAGQAGIAMSEHL--GRLGIPHCVLEK 38
                   789***************..999999999875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
  Lycopene_cycl 129 kirarlvvdarglasl 144
                     i ar vv+a+g +++
     EHU01828.1 124 PIVARRVVVATGPFQK 139
                    7899999999995555 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00073
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvl.ieaspsl 36 
                    v+viGaG  g+++A +l  +++g  v l + + + +
     EHU01828.1 171 VLVIGAGSSGVQIADEL--QRAGKDVWLsVGPHDRP 204
                    89***************..55555554313333333 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.015        14       2      27 ..      10      35 ..       9      51 .. 0.84
   2 ?    2.9   0.0     0.049        46     139     156 ..     125     142 ..      88     159 .. 0.82
   3 !    8.2   0.0    0.0013       1.2       2      28 ..     171     197 ..     170     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.015
                EEEE-SSHHHHHHHHHHHHTT--EEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlL 27
                  ViG+G AG++ + ++ rlG++   
  EHU01828.1 10 TLVIGAGQAGIAMSEHLGRLGIPHCV 35
                57**********99999999987655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.049
                 EEECEEEE--TT-BT-EE CS
        GIDA 139 ikakavviatGtflkgki 156
                 i a+ vv+atG+f k  i
  EHU01828.1 125 IVARRVVVATGPFQKPVI 142
                 56789*******998766 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0013
                 EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 v ViG+G +G+  A ++ r+G +v L 
  EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDVWLS 197
                 89*********************9986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0072       6.8       1      28 [.      12      39 ..      12      65 .. 0.89
   2 !    8.9   0.0    0.0018       1.7       1      22 [.     173     194 ..     173     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0072
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   ++GaG +G ++  +L + g+   +lek+
     EHU01828.1 12 VIGAGQAGIAMSEHLGRLGIPHCVLEKN 39
                   8*****************9998899886 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0018
                    EE--SHHHHHHHHHHHCCTEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdv 22 
                    ++GaG sG  +A +L++ag+dv
     EHU01828.1 173 VIGAGSSGVQIADELQRAGKDV 194
                    8*******************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0069       6.5       1      33 [.       9      43 ..       9      58 .. 0.88
   2 ?    5.4   0.1     0.012        12     162     205 ..      97     139 ..      63     164 .. 0.65
   3 !    6.7   0.2    0.0048       4.5       2      23 ..     171     194 ..     170     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0069
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                d ++iG+G +G++   +L r g   ++lek++ia 
  EHU01828.1  9 DTLVIGAGQAGIAMSEHLGRLGipHCVLEKNRIAE 43
                789***************888999*******6654 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.012
                 EEEESECEEEEEEEE..TCEEEEEEECT.EEEEEEEEEEE--GGGHH CS
         DAO 162 eilegtevtgleeed..gkvwgverttp.gendaadavVnaaGawsd 205
                  + +g ev ++   +    +  v   t+ g ++ a+ vV+a+G++ +
  EHU01828.1  97 PVKTGVEVISVVP-RvgRSGFDV--STSaGPIV-ARRVVVATGPFQK 139
                 3445555555422.111234444..66667664.599*******944 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0048
                 EEEECTSHHHHHHHHHHHHTT..E CS
         DAO   2 vviiGGGiiGlstAyeLarrg..V 23 
                 v++iG+G  G+ +A eL+r+g  V
  EHU01828.1 171 VLVIGAGSSGVQIADELQRAGkdV 194
                 89***************9888676 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.24   2.3e+02       3      22 ..      11      30 ..       9      42 .. 0.83
   2 !   12.9   0.0   0.00013      0.12       2      25 ..     171     194 ..     170     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.24
                EEECSSHHHHHHHHHHHHTT CS
   Pyr_redox  3 vvvGgGyiglElAgalaelg 22
                +v+G+G  g+ + + l +lg
  EHU01828.1 11 LVIGAGQAGIAMSEHLGRLG 30
                8***********99999988 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00013
                 EEEECSSHHHHHHHHHHHHTTSEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkV 25 
                 v+v+G+G +g+  A +l++ gk+V
  EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDV 194
                 89********************99 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0016       1.5      16      49 ..       6      38 ..       1      43 [. 0.89
   2 !    6.3   0.0    0.0054       5.1      16      39 ..     167     190 ..     154     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0016
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailer 49
                 e+D +++GaG +G++ +  l++  ++  ++le+
  EHU01828.1  6 QETDTLVIGAGQAGIAMSEHLGRL-GIPHCVLEK 38
                689********************9.999999997 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0054
                 TEEEEEEE--SHHHHHHHHHHHHC CS
        Thi4  16 aesDvvivGaGssGLtaayylakk 39 
                  e  v+++GaGssG+  a  l ++
  EHU01828.1 167 PEGGVLVIGAGSSGVQIADELQRA 190
                 57789*************999887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.012        12       1      30 [.       9      38 ..       9      45 .. 0.88
   2 ?    0.6   0.0      0.24   2.3e+02     189     214 ..     124     145 ..      77     159 .. 0.68
   3 ?    7.0   0.3    0.0028       2.7       2      26 ..     171     195 ..     170     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   D +ViG+G AG a +  + + G   +v+ek
     EHU01828.1  9 DTLVIGAGQAGIAMSEHLGRLGIPHCVLEK 38
                   89***********99999999998888887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.24
                    EEEESEEEE-----GG.......... CS
  FAD_binding_2 189 rirakavvlatgGfgrallkellgaa 214
                     i+a++vv+atg f++    ++++++
     EHU01828.1 124 PIVARRVVVATGPFQK----PVIPTI 145
                    689**********997....444444 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0028
                    EEEE--SHHHHHHHHHHHHTTT-EE CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkva 26 
                    v+ViG+G +G   A e+++aG++v 
     EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDVW 195
                    9*********************996 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.07        66       2      31 ..      11      40 ..      10      57 .. 0.82
   2 ?    8.1   0.0    0.0032         3       1      24 [.     171     194 ..     171     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.07
                EEES-SHHHHHHHHHHHHTTEEEEEEESSH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkde 31
                ++iG+G+ G ++ e L + g++  v +k++
  EHU01828.1 11 LVIGAGQAGIAMSEHLGRLGIPHCVLEKNR 40
                79**************99555688888874 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0032
                 EEEES-SHHHHHHHHHHHHTTEEE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdv 24 
                 +++iG+G  G ++a+eL+++gkdv
  EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDV 194
                 68*****************66555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.046        43      12      36 ..       7      31 ..       2      46 .. 0.80
   2 ?    6.7   0.0    0.0076       7.2      10      35 ..     166     191 ..     159     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.046
                  T-EEEEES-SHHHHHHHHHHHCCT- CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgv 36
                  e   l+iGaG+ +  + +hL + g+
    EHU01828.1  7 ETDTLVIGAGQAGIAMSEHLGRLGI 31
                  56789***********999987666 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0076
                   .TT-EEEEES-SHHHHHHHHHHHCCT CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakg 35 
                   l e  vl+iGaG  + ++a  L ++g
    EHU01828.1 166 LPEGGVLVIGAGSSGVQIADELQRAG 191
                   556679****************9877 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         2   1.9e+03       2      37 ..      11      46 ..      10      50 .. 0.72
   2 ?   10.3   0.0   0.00044      0.42       1      28 [.     171     198 ..     171     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHH CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsrrlealk 37
                +++GaG  G  +  +L + g +  ++ ++r +ea++
  EHU01828.1 11 LVIGAGQAGIAMSEHLGRLGIPHCVLEKNRIAEAWR 46
                699******999999988886655555554455565 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00044
                 EEEES-SHHHHHHHHHHHHHTHCEEEE- CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlil 28 
                 ++++GaG+ G  +a +L++ag dv+l +
  EHU01828.1 171 VLVIGAGSSGVQIADELQRAGKDVWLSV 198
                 68*********************99865 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.035        33      19      44 ..       8      33 ..       5      37 .. 0.89
   2 ?    4.7   0.0     0.018        17      14      41 ..     164     191 ..     154     193 .. 0.89
   3 ?   -3.3   0.0       4.7   4.5e+03     132     154 ..     255     276 ..     249     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.035
                SEEEEE--SHHHHHHHHHHHHHTTTE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 19 skvllvGaGglGsellknLalsGvgk 44
                + +l++GaG  G  + + L ++G+ +
  EHU01828.1  8 TDTLVIGAGQAGIAMSEHLGRLGIPH 33
                6789*******************966 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.018
                 HHHHTSEEEEE--SHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsG 41 
                 ++L +  vl++GaG  G  ++ +L ++G
  EHU01828.1 164 QQLPEGGVLVIGAGSSGVQIADELQRAG 191
                 5677788*****************9998 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.7
                 HHT-EEEEEEEETTEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 132 kkgiplieagtlgfegqvvviip 154
                 ++gi l+   t++f+g vv++ p
  EHU01828.1 255 EQGINLVG-LTERFSGEVVTFKP 276
                 66777766.89999999999965 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12   1.2e+02      25      44 ..       7      26 ..       2      45 .. 0.83
   2 ?    6.6   0.0    0.0042         4      20      47 ..     163     190 ..     152     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
                G--EEEEC-SHHHHHHHHHH CS
     Malic_M 25 eqkivvlGaGsagiGiaeqi 44
                e+  +v+GaG+agi ++e++
  EHU01828.1  7 ETDTLVIGAGQAGIAMSEHL 26
                566899********988776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0042
                 -S-GGG--EEEEC-SHHHHHHHHHHHHH CS
     Malic_M  20 gkklseqkivvlGaGsagiGiaeqivea 47 
                  ++l e  ++v+GaGs+g+ ia+++ +a
  EHU01828.1 163 PQQLPEGGVLVIGAGSSGVQIADELQRA 190
                 56799999***************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3249.89
//
Query:       EHU01829.1  [L=144]
Description: hypothetical protein CKS_0277 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-21   75.2   0.0    5.2e-21   74.9   0.0    1.1  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   2.9e-25   5.2e-21      12     120 ..      26     133 ..      19     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.9e-25
                    BSEEEETTEEEEEEE-SB-TTTSCB..-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE-SB CS
  Ribonuc_L-PSP  12 sqavkagnlvyvsGqlpldpetgelv.egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsaveVaa 106
                     q+v+agn+vy+ Gq+++d  +g+l+  gd+++q++qa++n+k++L++ag++ls++Vk+t +++d    + v + ++++++    +P+++   ++a
     EHU01829.1  26 CQVVRAGNTVYLRGQVGTDF-DGNLIgLGDPAAQAAQAMKNVKQLLEEAGSDLSHIVKTTTYIVDPRYREPVYREVGKWLKGV--FPVSTGLMISA 118
                    689***************95.888888***************************************99888888899999999..5********** PP

                    SG.GG-SEEEEEEEE CS
  Ribonuc_L-PSP 107 Lp.kgakvEIeaiav 120
                    L+ +++++EI++iav
     EHU01829.1 119 LAqPQWLMEIDVIAV 133
                    **9***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1069.72
//
Query:       EHU01830.1  [L=224]
Description: major pilin protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-62  210.9   0.3    1.6e-62  210.7   0.3    1.0  1  DUF1028   Family of unknown function (DUF1028)


Domain annotation for each model (and alignments):
>> DUF1028  Family of unknown function (DUF1028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.3   9.1e-67   1.6e-62       1     193 []       2     191 ..       2     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 9.1e-67
                 EEEEEEE-TTT--EEEEEEESSS-HHHHHEEEETTTEEEEEESS--HHHHHHHHHHHHTT--HHHHHHHHHHT-TTGGG-EEEEEETTS-EEEEE-TTS CS
     DUF1028   1 TfSivardpetgelGvAvaskslaVgalvpfaragvGavatQaltnpelgekglelleagasaeealeallaadegrelRQlavvdakgetaaftGeec 99 
                 T S+ ar++etg+lG+A++s+s+aVga++p+++agvGav++Q++t p+lg+++l  l++g + + al+++la d+ +++RQ+a++d++g+ta f+G+++
  EHU01830.1   2 TLSVTARCEETGQLGIAISSSSIAVGARCPWLHAGVGAVSSQNITLPSLGQQILLHLDQGSDLNVALKRALAGDRFSDYRQVAAIDIQGNTAFFSGSKT 100
                 89************************************************************************************************* PP

                 -S-EEEE.ETTEEEEEES-S-TCHHHHHHHHH.....S-HHHHHHHHHHHHHHT--------EEEEEEEE....TTEEEEEEEE--.SS-HHHHH CS
     DUF1028 100 lewaghrtgenyavaGNlLageevleamaeafeategepLaerLlaALeaGeaaGGDkrgrqSAallVvresedeskpyvdLrvdd.hedpiaeL 193
                 l+  + ++g+n+ +aGN+La++ v ++m++afea++g +La+rLlaAL+aG aaGG++++ +SAal+ v+   d  +p+vdLr+d+  +dp+ +L
  EHU01830.1 101 LGIWSMAEGKNCIAAGNMLANKGVTASMCAAFEAASG-ELASRLLAALQAGVAAGGEAGPLHSAALKLVD---DYPWPLVDLRIDWtVHDPVGQL 191
                 **666666************************99999.9*******************************...99***********8899*9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1652.53
//
Query:       EHU01831.1  [L=403]
Description: acetylornithine deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-33  116.2   0.0      2e-33  115.9   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    8.6e-24   83.6   0.0    1.4e-23   82.9   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
    0.00071   19.3   0.0     0.0017   18.1   0.0    1.6  1  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
      0.021   13.8   0.0       0.04   12.9   0.0    1.4  1  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   4.4e-37     2e-33       1     204 [.      72     381 ..      72     383 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 4.4e-37
                    EEEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdav 94 
                    +l +H+DvVp e+++  w+  pf+lte+dG++yGrG++dmkg ++++l+ l a+ ++ +  + +++l+f +dEE+g+ G ++l++ l  + +++ +
     EHU01831.1  72 MLSGHTDVVPvEGQN--WSVpPFALTERDGRYYGRGSADMKGFIACVLAMLDAFLQQPL--RMPLHLAFSCDEEVGCLGVRSLVAMLN-ASPAKPA 162
                    699*******88888..****************************************85..66**********************555.4455554 PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    + ++++ep+ ++       +v                                                                           
     EHU01831.1 163 M-CIVGEPTAMQ-------PVyghkgkravrcrvqghachsaythqgvnavhyaarliahllqqeealkqqrderfeppystlqigtiqggtalni 250
                    4.99********.......44457788999****************************************************************** PP

                    .............................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH CS
                    .............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 .............................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarff 166
                                                                 ++++++l++++   ++  p +++++  a+   g+  e+ + +  gt+ + f
     EHU01831.1 251 vpetcqfdmewrtlpgtdaqalydsvrhfaeaelvpemqrteplcNITFQPLSDYPGLLTD--PQTDFARWLAQWS-GH-NEFATVA-FGTEGGLF 341
                    ******************************************8766777766777766666..8888888887543.73.4566888.99999999 PP

                    ..TTTEEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHH CS
                    ..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 167 ..agiptvmifgpgs.glaHspnEyvdledlekgikvlarl 204
                       g+ + +++gpgs ++ H+ +E+v+le+le ++++l++l
     EHU01831.1 342 deIGV-ATLVCGPGSmEQGHKADEFVSLEQLECCMAMLQNL 381
                    44444.557899**99********************99865 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   3.1e-27   1.4e-23       1     106 [.     176     285 ..     176     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 3.1e-27
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.........TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia....eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevle 95 
                 +ghkG   ++++v+g+a+Hs++ + g+NA++++arl+a+l ++e+  +    e++ +p++tl++++i+gG+a n++p+++++ +++R+lpg d++++ +
  EHU01831.1 176 YGHKGKRAVRCRVQGHACHSAYTHQGVNAVHYAARLIAHLLQQEEALKqqrdERFEPPYSTLQIGTIQGGTALNIVPETCQFDMEWRTLPGTDAQALYD 274
                 79**************************************999777779************************************************** PP

                 HHHHHHTSCCS CS
   M20_dimer  96 eieeilekeap 106
                  ++ ++e+e++
  EHU01831.1 275 SVRHFAEAELV 285
                 ***99998765 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-07    0.0017       1      84 [.      58     155 ..      58     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.8e-07
                    EEEEEESTTCESEEEEEEEE--B-TTT..............TCC.T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHH CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvg..............rgp.ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkaf 81 
                    N+ a+l ++  +  ++l++H D v+v+              +g     G  D    +a +L ++ ++ +  + +++ + ++f   EE g+lG + +
     EHU01831.1  58 NLYARLGPEG-EGGVMLSGHTDVVPVEgqnwsvppfalterDGRyYGRGSADMKGFIACVLAMLDAFLQ--QPLRMPLHLAFSCDEEVGCLGVRSL 150
                    8899999999.89*************99*****99999976343666799******************8..346*********************9 PP

                    HH..H CS
  Peptidase_M28  82 ak..a 84 
                    ++  +
     EHU01831.1 151 VAmlN 155
                    96643 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.9e-06      0.04     138     181 ..     112     155 ..      92     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.9e-06
                    HHHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHHHH- CS
  Peptidase_M42 138 gvavllellkelkeeeleatvylvatvqEEvGlrGaktsaekik 181
                     +a +l++l ++ ++ l + ++l++++ EEvG+ G + ++ +++
     EHU01831.1 112 FIACVLAMLDAFLQQPLRMPLHLAFSCDEEVGCLGVRSLVAMLN 155
                    5788999999999**********************988776653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3063.00
//
Query:       EHU01832.1  [L=257]
Description: hypothetical protein CKS_0280 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-05   23.8   0.0    0.00011   23.0   0.0    1.4  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    0.00016   21.6   1.5       0.54   10.0   0.6    2.8  2  TauD            Taurine catabolism dioxygenase TauD, TfdA fam
     0.0012   19.3   0.0     0.0022   18.5   0.0    1.5  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily
     0.0036   17.6   0.0        0.7   10.1   0.0    2.2  2  PhyH            Phytanoyl-CoA dioxygenase (PhyH)


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.5e-08   0.00011       5      92 ..     138     234 ..     135     238 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.5e-08
                     EE.-TT-EEEEE-SS--.......--TT.-.EEEEEEEEE........ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS- CS
  2OG-FeII_Oxy_3   5 ry.gegqeykpHvDnfe.......keegsgqrrltvllyLne....keseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkgge 87 
                     +y  + +e+ +H+Dn++       +++  g  r+ ++  L +    + ++ G   ++ +++++  +++  +g+lvlF+ ++   H+v+p++ + +
      EHU01832.1 138 HYaPQDKELGWHFDNSSfaitllvQKPL-GGGRFQYVKDLRDadagEMNYAGV-AAVLDEQHPVDELAMDAGDLVLFRGRNS-LHRVTPTEGDVT 229
                     45456789******98899999854444.788888888886544322223333.566577779999999*********9755.4*****975559 PP

                     EEEEE CS
  2OG-FeII_Oxy_3  88 Rlslt 92 
                     R+ ++
      EHU01832.1 230 RMLAV 234
                     98775 PP

>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.6   0.00012      0.54      18      79 ..       9      69 ..       4     168 .. 0.76
   2 !    9.4   0.0   0.00019      0.84     233     265 ..     201     232 ..     176     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
        TauD 18 dleslddel.keelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevld 79
                dl++l+d   ++  r+ l+++g++v+r f l+p++++++ +  G  ++ + ++t + ++  l 
  EHU01832.1  9 DLHPLTDHAwRQDCRRQLNQHGALVLRHF-LQPAALQAIVAE-GNAQRDRAYYTVSQHNVYLM 69
                566788888899999*************9.999999999998.66666666666666655555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00019
        TauD 233 rfqwqeGdlvifdNrrvlHgrtafdegeeRhll 265
                 ++ + +Gdlv+f  r  lH+ t+  eg+  ++l
  EHU01832.1 201 ELAMDAGDLVLFRGRNSLHRVTPT-EGDVTRML 232
                 678999*****************9.66454443 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.8e-07    0.0022       8      95 ..     137     233 ..     113     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.8e-07
                   EEE-S---------EEEEEESSS..EEEEEEE-..TT---EEEE..............TEEEE----TTEEEEEE-HHHHHHTTS-S----EEE--- CS
  2OG-FeII_Oxy   8 nyypphpdpevilglgahtdasl..ltillqdd..vgglevfkd..............gkwlrvppvdnslivniGdallflsngryksvlHrVlpv 86 
                    +y p+ d+e    lg h d s   +t+l q +   g ++++kd                +l+ +++ ++l + +Gd +lf   g  +++lHrV+p+
    EHU01832.1 137 LHYAPQ-DKE----LGWHFDNSSfaITLLVQKPlgGGRFQYVKDlrdadagemnyagvAAVLDEQHPVDELAMDAGDLVLF--RG--RNSLHRVTPT 224
                   345666.666....89******9667778899976666688777777999999999543399999999*********7555..44..78******99 PP

                   -GTGSEEEE CS
  2OG-FeII_Oxy  87 negerRvsi 95 
                   + + +R+ +
    EHU01832.1 225 EGDVTRMLA 233
                   999989865 PP

>> PhyH  Phytanoyl-CoA dioxygenase (PhyH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00016       0.7       2      55 ..      27      82 ..      26     158 .. 0.72
   2 !    5.8   0.0    0.0032        14     174     195 ..     194     215 ..     174     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
                HHHSEEEETTSS-HHHHHHHHHHHHHHHHHCHTTCCSEEE..EECEEESTTCCCEE CS
        PhyH  2 eedGylviegflsaeevealraeiealldralesgdkidf..ffeekaaadedgll 55
                +++G+lv++ fl +++++a+ ae +a  dra ++ +++ +  +++   + d +  +
  EHU01832.1 27 NQHGALVLRHFLQPAALQAIVAEGNAQRDRAYYTVSQHNVylMKTDAGFSDSHPRN 82
                799********************999977666655555540044444555544444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0032
                 GHGSCEEEE.BTTTEEEEEETT CS
        PhyH 174 edeeeavpvevkaGdavlfhgr 195
                 ++++++ ++ ++aGd+vlf gr
  EHU01832.1 194 DEQHPVDELAMDAGDLVLFRGR 215
                 5678888999*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1908.10
//
Query:       EHU01833.1  [L=300]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-27   93.7   3.8    1.3e-26   93.2   3.8    1.2  1  LysR_substrate  LysR substrate binding domain
    2.3e-19   69.1   0.8    4.2e-19   68.2   0.8    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.06   13.2   0.4       0.14   12.0   0.1    1.7  2  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   3.8   2.2e-30   1.3e-26       3     207 ..      94     297 ..      92     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 2.2e-30
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG..SSS CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar..gep 95 
                     + + +L++ + p+la+ +l p l r+r+r P+v+l+l+ ++  + +d  +   +D++ ++g+++ ++l    L+++++++vasp   + +  +e 
      EHU01833.1  94 ETAAQLTLYTLPALASKWLLPHLCRWRERCPDVSLSLHGTH--AEVDFAQTP-ADFVMCFGEEAYPRLNKAYLFHDEVLPVASPRL-IDAfsRED 184
                     5677999*******************************777..888966666.********************************6.55577777 PP

                     ECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg..lrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelyl 185
                     +    L++ pli+l+ g    +   +  +++++g ++   r+a+++n ++ +++++ aG G+ l  r ++++ l++g+lv+++  ++pl+ ++yl
      EHU01833.1 185 L----LRHAPLIHLDWGKEgrFLPDWSGWFEAKGMAVpaaRPAMTFNLTSLAIDAAVAGAGVLLGQRRMIAQVLDRGELVIVDALALPLSKPYYL 275
                     7....999******998888899**********9999999******************************************99999******** PP

                     EEETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 186 vyrkgrelspavrafidflrea 207
                     +++ +   +p ++a+i++l e 
      EHU01833.1 276 AWPNRTLNQPGAEAMIAWLGEL 297
                     *******************886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.8   7.1e-23   4.2e-19       2      59 ..      12      69 ..      11      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 7.1e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                + ++ f+  ae+gs+trAA +L l+++avs+qi++LE++lg+ Lf Rt++g+ LTe G
  EHU01833.1 12 NVIQSFKVAAETGSLTRAAAQLALTPAAVSQQIRQLEDHLGCVLFLRTQQGVMLTETG 69
                56899******************************************999******99 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.4e-05      0.14      11      43 ..      22      54 ..      18      61 .. 0.91
   2 ?   -3.0   0.0       1.1   6.7e+03      15      23 ..      92     100 ..      87     101 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS-- CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgld 43
                + g+++++A++L + +  +++ +r++e+ lg+ 
  EHU01833.1 22 ETGSLTRAAAQLALTPAAVSQQIRQLEDHLGCV 54
                569****************************85 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 HHHHHHHHT CS
      HTH_30  15 isatAkaLh 23 
                 +++tA++L 
  EHU01833.1  92 RTETAAQLT 100
                 578888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1626.79
//
Query:       EHU01834.1  [L=127]
Description: hypothetical protein CKS_0282 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-59  196.7   0.1      1e-58  196.5   0.1    1.0  1  DUF3225   Protein of unknown function (DUF3225)
    6.5e-08   32.9   0.4    7.9e-08   32.7   0.4    1.1  1  DUF4440   Domain of unknown function (DUF4440)
    0.00015   22.0   0.0    0.00019   21.7   0.0    1.1  1  SnoaL_3   SnoaL-like domain
     0.0017   18.5   0.5     0.0032   17.6   0.5    1.4  1  SnoaL_4   SnoaL-like domain


Domain annotation for each model (and alignments):
>> DUF3225  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   0.1   2.3e-62     1e-58       2     123 ..       5     126 ..       4     127 .] 0.99

  Alignments for each domain:
  == domain 1  score: 196.5 bits;  conditional E-value: 2.3e-62
                 GBS-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHB--STT-EEEETTEEEESHHHHHHHHHHS--TT---EEEEEEEEEETTTEEEEEEEEE-SS-SS-E CS
     DUF3225   2 einkpevlaevtaafarYeaaLvsndvaaldalfwddpktvRyGvgenLyGieairafRaarpsvglaRellrtvvttfGeDvavasvefrregseriG 100
                  in pevl  vtaaf+rYe+aL+ nd+a+ld+lfw+dp+tvR+G+genLyGi++irafRaarps+gl+R+l++tv+ttfG+ +av+s+ef+r+g+e+iG
  EHU01834.1   5 AINLPEVLNAVTAAFYRYEKALTGNDIAVLDELFWHDPRTVRLGAGENLYGIDEIRAFRAARPSAGLDRTLRNTVITTFGDAYAVCSTEFTRAGTEKIG 103
                 69************************************************************************************************* PP

                 EEEEEEEEETTEEEEEEEEEEE- CS
     DUF3225 101 RqsqtWvrlpegWrivaahvsll 123
                 Rq+qtWv++p+gWrivaa+vsl+
  EHU01834.1 104 RQQQTWVKFPQGWRIVAAQVSLM 126
                 **********************9 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.4   1.8e-11   7.9e-08       2     107 .]      16     118 ..      15     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.8e-11
                 HHHHHHHHHHHHCT-HHHHHHCEEEEEEEE..-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECCTTEEEEEEEEEEEEE CS
     DUF4440   2 aaleealeeafvagdaealaallapdavlv..gpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtgrytfegrgdgepvegrgrftsvw 98 
                 +a++ ++e+a++  d++ l++l+  d + v  g+++ +++++e+ +  +a ++ag + +l+++ + + gd  +v+ +  f++  +g   e  gr   +w
  EHU01834.1  16 TAAFYRYEKALTGNDIAVLDELFWHDPRTVrlGAGENLYGIDEIRAFRAARPSAGLDRTLRNTVITTFGDAYAVCST-EFTR--AG--TEKIGRQQQTW 109
                 688899*****************999988877999999********************************9999988.5654..44..34669****** PP

                 EEETTEEEE CS
     DUF4440  99 rkegggWri 107
                 +k ++gWri
  EHU01834.1 110 VKFPQGWRI 118
                 ********8 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.2e-08   0.00019       1     118 [.      15     125 ..      15     127 .] 0.88

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 4.2e-08
     SnoaL_3   1 vealldafyeaaaegdfdalfalwaddivfigtgadelltgreevrrslkqifakgegisfeltdvrvtesgdvawvtelldvtaaedgtegegqlrlT 99 
                 v a++ ++ +a++  d++ l +l+  d  ++  ga+e+l+g +e+r++ +   +   g++ +l+++ +t  gd   v+ ++ + a   gte+ g  r  
  EHU01834.1  15 VTAAFYRYEKALTGNDIAVLDELFWHDPRTVRLGAGENLYGIDEIRAFRAARPS--AGLDRTLRNTVITTFGDAYAVCSTEFTRA---GTEKIG--RQQ 106
                 678889999**************************************9987555..69***************999999987655...777766..555 PP

     SnoaL_3 100 gvlrrtdggWkivhhhlSv 118
                   +++  +gW+iv  + S 
  EHU01834.1 107 QTWVKFPQGWRIVAAQVSL 125
                 6689**********99996 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.5   7.1e-07    0.0032       8     122 ..      14     117 ..      10     121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.1e-07
                 HHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EEEEETTE.EEEEEEEEEEEEETTEEEEEE. CS
     SnoaL_4   8 aIrdlvarygyylDtkdweeladlFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnplieldgdt.Atgrayllatlvrdgdggrqvl 105
                 a+   ++ry  +l+ +d + l++lF+ d +    g    +l g+d+ira+ +++  + a  +  l n++i+  gd  A +++ ++   +++        
  EHU01834.1  14 AVTAAFYRYEKALTGNDIAVLDELFWHDPRTVRLGA-GENLYGIDEIRAFRAAR--PSAGLDRTLRNTVITTFGDAyAVCSTEFTRAGTEK-------- 101
                 788999**********************88777765.57788*******66665..8999999********99996588777776664333........ PP

                 .EEEEEEEEEEETTEEE CS
     SnoaL_4 106 aggryedelvredggWr 122
                   gr + ++v+   gWr
  EHU01834.1 102 -IGRQQQTWVKFPQGWR 117
                 .3444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1014.82
//
Query:       EHU01835.1  [L=466]
Description: amidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-100  336.9   0.2   5.6e-100  335.4   0.2    1.6  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.4   0.2  3.1e-104  5.6e-100       1     451 []      24     444 ..      24     444 .. 0.91

  Alignments for each domain:
  == domain 1  score: 335.4 bits;  conditional E-value: 3.1e-104
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B.-SS--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenyp.aekDatvverLkkaGavilgk 98 
                 e+ e+ l  ie+ n++lna+  ++     ++A+++dk+r rg++ +pL+G+P +vK  +dv+g+ t aG + + ++p a++Da  +++L++aGa++ g 
  EHU01835.1  24 EVAEQTLTVIEKQNPQLNAWTDITATRMVQEADAIDKQRLRGETLPPLAGIPYAVKNLFDVQGYTTLAGARLFRQRPtATRDAFAITQLQQAGALLSGM 122
                 677899999**************************************************************9999872566****************** PP

                 E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSH CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsv 197
                  nmd  a+g +ten+ +g+t+NP d+ r++GGSSGGsAAavAaglvp+++GtDt GSiR+PAs+cg++GlKPt+gr+Sr+g  ++ +sld++Gp+ar+v
  EHU01835.1 123 VNMDAYAYGFTTENTHYGATHNPHDLARIAGGSSGGSAAAVAAGLVPFSLGTDTNGSIRVPASLCGIFGLKPTFGRLSRSGSHPFVASLDHIGPFARRV 221
                 *************************************************************************************************** PP

                 HHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT.-EEEEEE-CCGGGHHHHHHHHHHHH CS
     Amidase 198 edlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaG.hevvevelpsleealslyylilvae 295
                 +dlal+++ + g+d+ d  +++  ++  ++ ++lk+  ++lr +v+  ++ +  +++ ++a +++++aL+++  + + e+el + +      +++ ++e
  EHU01835.1 222 DDLALVYDLLQGHDSTDAFQAD--RPLAATLPQLKNGAQDLRCAVLGGFFSTWCNDDARAAQLQVAQALQAQDdVVIAEAELARSA-----AFIMTASE 313
                 **********************..5699999*******************999*******************98888886665554.....45567778 PP

                 HHHHTTT-SSSSS---SS-SCCCCCCCHHHH..CCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCC CS
     Amidase 296 assnlarylgvryerlsetkvlsellpksra..ellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgek 392
                 +++                    ++lp+ r+  +l++++ + r+  g++  +a     +y +aq+ rr ++++++ +f ++Dvl++P++p+ ap +g++
  EHU01835.1 314 GGN--------------------HYLPALRQqpDLFEPHSRERLLAGAMLPAA-----WYVQAQRFRRHFQQQVVPLFAQYDVLIAPATPCSAPLIGQE 387
                 873....................345555552277888888888888877765.....59*************************************** PP

                 CHHH.CSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 393 dkti.dsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                 + +i  + +   +++ ++  + p ++ glp  +vp+++ ++glP+Gvq+ig +f+e+++L
  EHU01835.1 388 TIAInGQNLPTKASMGML--TQPISFLGLPVCTVPMTT-ASGLPIGVQLIGAPFNEQAVL 444
                 998865555556666666..9***************97.67****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3161.02
//
Query:       EHU01836.1  [L=60]
Description: hypothetical protein CKS_0284 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.4   1.8    2.2e-17   63.2   1.8    1.0  1  DUF4089   Protein of unknown function (DUF4089)


Domain annotation for each model (and alignments):
>> DUF4089  Protein of unknown function (DUF4089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   1.8   1.2e-21   2.2e-17       1      50 []       9      58 ..       9      58 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.2e-21
     DUF4089  1 YvdqtaallgLeldpeyrpgVvanferiaaiAqlvnefPLpeeiEpAPvF 50
                Y++q++++l+ eld+ +r++++++++ria +A++++++PL++++E+A+v+
  EHU01836.1  9 YIAQMEQILNVELDEDRRAALLQQMTRIADMAAPLMAYPLDDRLEVAGVY 58
                9************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 469.07
//
Query:       EHU01837.1  [L=528]
Description: gamma-glutamyltranspeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.7e-133  443.8   0.2   9.9e-133  443.6   0.2    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.6   0.2  5.5e-137  9.9e-133       2     512 .]      25     523 ..      24     523 .. 0.96

  Alignments for each domain:
  == domain 1  score: 443.6 bits;  conditional E-value: 5.5e-137
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTTTSCBCCHHHHSSGG.G-BB--HHHHHHHHH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmfdkegdsklsktgal.avgVPGevagleeah 94 
                       vLr+GGnA++A+vAaa++++vv+p+++G+GG+gf+l+   k+  v  +d++++A++ a+ d++  +g+++++++g++ a +V G+v+g+++a+
       EHU01837.1  25 AVLREGGNAIEAMVAAAATIAVVYPHMNGLGGDGFWLIMPGKGDPV-GIDGSGRAGSLANFDFY--KGETHIPHRGPKaALTVAGTVSGWQAAL 115
                      69**************************************999999.7****************..************899**********998 PP

                      H...HH-..SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHH CS
  G_glu_transpept  95 k...kyG..klpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaeaFYkGelA 183
                      +   + G  +lp+ +ll  a+++a +G+pv+  +a+a+++++++l++ p++a++Flp+g+v+++g++++qp+lA+tL++l+eeG ++FY+G+lA
       EHU01837.1 116 DlsaELGgtTLPLPRLLRDAVRYAADGIPVTASQAAATRTKRDELQHLPGFAATFLPDGDVPAEGSRFTQPDLARTLSLLSEEGLDSFYRGTLA 209
                      622267799************************************************************************************* PP

                      HHHHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-S CS
  G_glu_transpept 184 eklvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylg 277
                      + l++e+ + g  +t++DL++ +++ ++pl++++  + ++++++p+++g+v l+iL i +++d+ ++++  ++t+h++vEa+k a+a R++ ++
       EHU01837.1 210 QHLAEEMVNLGIPITLADLQQQRARRVTPLHIRH-SEGDIWNITPPTQGMVSLAILGITDHLDMANADE--VQTIHRIVEATKKAFALRDQHIT 300
                      **********************************.99**************************766655..9********************** PP

                      STTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGG CS
  G_glu_transpept 278 DpdfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemdd 371
                      Dp++v    e ++ ll+ e ++ +a++I+d++a p+        +    g+T+++ v+D++g  VS++++i+++FGsgvvvpgtG +++n++  
       EHU01837.1 301 DPRHVV---EDLQALLDGETLATLASQIQDDRAAPW-------GTGRGPGDTVWMGVMDSSGLSVSFIQSIYHEFGSGVVVPGTGLVWQNRGAA 384
                      ***996...67************************5.......567779********************************************* PP

                      SBSTS..TTSCSTTSTTB--TT----B----EEEEETTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEE.....SSSSTEEE CS
  G_glu_transpept 372 fstgvenafgldpspanaiePgkRplssmaPtivlkdgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihh.....qllpdkve 460
                      fs        ldp+++ a++Pgk+p++++ P     ++   +v+G++GG+ ++++++ ++++++ + l+lq+av+apr+       q l+d ++
       EHU01837.1 385 FS--------LDPDHMLALAPGKQPFHTLNPAAARLKDGRTMVYGSMGGDGQPQTQAAIFTRHVIQRLPLQQAVSAPRWLLgrtwgQ-LSDSLK 469
                      **........*********************************************************************99988854.888*** PP

                      ESTTS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEE..TTTEEEEEE-TTTTT CS
  G_glu_transpept 461 vEegfseevveeLearGhkvkevedsssvvaavavak..ekgvleaasDprkdg 512
                      +E++f  +++e+L+a+Gh+v++ +  s++v ++ ++   ++g +e+asDpr++g
       EHU01837.1 470 LESRFAPDTLEALRALGHDVESLPAYSEAVGHAGAIVrhNNGMFEGASDPRSNG 523
                      ************************999987776665556************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4115.88
//
Query:       EHU01838.1  [L=279]
Description: putative RpiR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-14   51.5   0.0    1.2e-13   51.0   0.0    1.2  1  SIS             SIS domain
    2.1e-12   46.9   0.0    4.8e-12   45.7   0.0    1.6  1  HTH_6           Helix-turn-helix domain, rpiR family
    0.00025   20.8   0.0    0.00054   19.7   0.0    1.5  1  LacI            Bacterial regulatory proteins, lacI family
    0.00039   20.3   0.1     0.0023   17.9   0.0    2.5  3  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0052   16.5   0.1      0.027   14.3   0.0    2.3  2  HTH_IclR        IclR helix-turn-helix domain
     0.0092   15.6   0.4      0.028   14.1   0.1    2.0  2  Crp             Bacterial regulatory proteins, crp family
  ------ inclusion threshold ------
       0.01   15.7   0.3      0.043   13.7   0.0    2.2  2  MarR_2          MarR family
      0.014   15.3   0.1      0.065   13.2   0.0    2.2  2  MarR            MarR family
      0.026   15.1   0.0      0.074   13.7   0.0    1.7  1  HHH_5           Helix-hairpin-helix domain
       0.03   14.4   0.0      0.093   12.8   0.0    1.8  1  HTH_3           Helix-turn-helix
      0.033   13.1   0.0      0.048   12.6   0.0    1.2  1  Phage_min_cap2  Phage minor capsid protein 2
      0.047   13.3   0.1       0.15   11.6   0.0    1.9  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.067   13.6   0.8       0.25   11.8   0.0    2.4  2  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.072   12.9   0.1        0.6   10.0   0.0    2.5  2  HTH_23          Homeodomain-like domain
      0.089   13.1   0.2       0.71   10.3   0.0    2.6  3  HTH_31          Helix-turn-helix domain
       0.13   12.0   0.2        2.8    7.8   0.0    2.8  3  HTH_38          Helix-turn-helix domain
       0.14   12.3   0.0       0.43   10.7   0.0    1.8  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.2e-16   1.2e-13       2     130 ..     124     249 ..     123     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.2e-16
                 HCTSSEEEEEESHHHHHHHHHHHHHH.HHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkl.eeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 La+akriy++G++  y++a+ l+ +l +  ++++   ++  +l  + l  i+++d v++i+f+++t+  + + +++++   +++a++  ++ ++   a+
  EHU01838.1 124 LAQAKRIYIVGMRNAYPVALHLRQQLiQTRAQVHILPQPGQTLAED-LVDITPEDMVVVIAFRRRTRIIQPLMQQLQNARIPVLALCEPQAQSVISLAR 221
                 99************************55556677777777778888.**************************************************** PP

                 EEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepetlvastksltaqlaaldalav 130
                   ++ + +  +   +++s+ + ++++++la+
  EHU01838.1 222 WQFCAPLDSVS---AFDSYASAMSLVNLLAN 249
                 *********99...************99986 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   4.6e-15   4.8e-12       2      71 ..       3      72 ..       2      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 4.6e-15
                -HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHH CS
       HTH_6  2 nllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLa 71
                +l e+++ ++ +l+  e++ia++i  + d +i+  +++lA  ++vS+at+ r+ k LG+  +++++ +L 
  EHU01838.1  3 QLDERLRTHYPQLSLQEQRIADFIFDHFDDLISYNSAELARLSGVSKATVSRLFKRLGYDKYKDMRDELR 72
                67899************************************************************98875 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.1e-07   0.00054       4      19 ..      40      55 ..      39      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.1e-07
                HHHHHCTS-HHHHHHH CS
        LacI  4 DVArlAGVSkaTVSrv 19
                ++Arl+GVSkaTVSr 
  EHU01838.1 40 ELARLSGVSKATVSRL 55
                78*************6 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.2e-06    0.0023       1      45 [.      20      59 ..      20      77 .. 0.87
   2 ?   -2.9   0.0       6.7     7e+03      41      52 ..     120     131 ..     111     152 .. 0.54
   3 ?   -3.4   0.0       9.7     1e+04      47      60 ..     146     159 ..     142     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.2e-06
                HHHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  1 qRlArfLlrlaeraggeielpltqeelAsmlGltretvsrilseL 45
                qR+A f+ ++ ++    + ++ + +elA++ G++  tvsr++++L
  EHU01838.1 20 QRIADFIFDHFDD----L-ISYNSAELARLSGVSKATVSRLFKRL 59
                7999999886554....4.899*********************99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.7
                 HHHHHHHTTSEE CS
   HTH_Crp_2  41 ilseLkreglis 52 
                 ++++L +++ i 
  EHU01838.1 120 VIAQLAQAKRIY 131
                 444444444433 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.7
                 HTTSEEET.EEEEES CS
   HTH_Crp_2  47 reglisrg.rriril 60 
                 r++li+++ + ++il
  EHU01838.1 146 RQQLIQTRaQ-VHIL 159
                 5788886624.7765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.5e-05     0.027      22      42 ..      39      59 ..      34      64 .. 0.88
   2 ?   -2.4   0.1         4   4.3e+03      23      36 ..     251     264 ..     240     268 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                HHHHHHHTS-HHHHHHHHHHH CS
    HTH_IclR 22 selArrtglpkStvhRlLqtL 42
                +elAr +g++k+tv+Rl + L
  EHU01838.1 39 AELARLSGVSKATVSRLFKRL 59
                7***************97665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
                 HHHHHHTS-HHHHH CS
    HTH_IclR  23 elArrtglpkStvh 36 
                  l++ ++l ++  h
  EHU01838.1 251 LLHELLALGRPRIH 264
                 45556666666555 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.3   4.6e+03       6      12 ..      20      26 ..      17      26 .. 0.84
   2 !   14.1   0.1   2.6e-05     0.028       7      28 ..      40      61 ..      38      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.3
                HHHHHHH CS
         Crp  6 qdIAdyl 12
                q IAd++
  EHU01838.1 20 QRIADFI 26
                679**97 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.6e-05
                HHHHHHTS-HHHHHHHHHHHHH CS
         Crp  7 dIAdylGlTrETVSRlLtrLre 28
                ++A++ G +  TVSRl++rL  
  EHU01838.1 40 ELARLSGVSKATVSRLFKRLGY 61
                99******************75 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.1e-05     0.043      23      45 ..      37      59 ..      14      60 .. 0.74
   2 ?   -1.7   0.1       2.6   2.8e+03      10      29 ..     251     268 ..     244     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
                EHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrL 45
                + +elar  g+sk++vsr+ krL
  EHU01838.1 37 NSAELARLSGVSKATVSRLFKRL 59
                679****************9998 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
                 HHHHHHCTTTSEEEHHHHHH CS
      MarR_2  10 vLaaLgrrpgrdltvgelar 29 
                 +L++L + ++   ++ ++a+
  EHU01838.1 251 LLHELLALGR--PRIHQIAD 268
                 7888888776..46666665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.2e-05     0.065      19      41 ..      37      59 ..      31      60 .. 0.89
   2 ?   -2.4   0.1       4.6   4.8e+03       8      25 ..     251     268 ..     250     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.2e-05
                EHHHHHHHHTS-HHHHHHHHHHH CS
        MarR 19 svseLakklgvskstvtrvldrL 41
                + +eLa+ +gvsk+tv+r+ +rL
  EHU01838.1 37 NSAELARLSGVSKATVSRLFKRL 59
                678******************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
                 HHHHHHHSTTEEHHHHHH CS
        MarR   8 iLrilyeqgplsvseLak 25 
                 +L+ l   g ++++++a+
  EHU01838.1 251 LLHELLALGRPRIHQIAD 268
                 688899999999999996 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     7e-05     0.074      25      55 ..      29      59 ..      21      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7e-05
                SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5 25 svedlaaadveeLakipGiGkktAeriilel 55
                 ++dl++ + +eLa++ G++k t+ r+   l
  EHU01838.1 29 HFDDLISYNSAELARLSGVSKATVSRLFKRL 59
                489***********************97655 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.8e-05     0.093      13      31 ..      39      57 ..      34      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.8e-05
                HHHHHHHTSSHHHHHHHHT CS
       HTH_3 13 eeLAeklGvsrstisriEn 31
                +eLA+++Gvs++t+sr+++
  EHU01838.1 39 AELARLSGVSKATVSRLFK 57
                79**************975 PP

>> Phage_min_cap2  Phage minor capsid protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-05     0.048      62     135 ..      40     110 ..      33     140 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
  Phage_min_cap2  62 liskltgksekelrkllkeagdkaiksddkelaiykeaglepkplekseelqqlveaylkqtegelkNltntta 135
                      +++l+g s+ ++ +l+k  g+ ++k+   el++ ++ g    pl+++ +  q    +++  ++e+ Nlt+ + 
      EHU01838.1  40 ELARLSGVSKATVSRLFKRLGYDKYKDMRDELRTLRQSG---MPLTDNRDAVQGNTLLSRHYKQEMANLTQWVN 110
                     68899**********************************...66666665555555555555555555554332 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.15      21      41 ..      39      59 ..      36      60 .. 0.94
   2 ?   -2.4   0.0       3.5   3.7e+03      14      25 ..     199     210 ..     194     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      HTH_24 21 reLAerlglSpstvnrrlkrL 41
                +eLA+ +g+S++tv+r  krL
  EHU01838.1 39 AELARLSGVSKATVSRLFKRL 59
                8******************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
      HTH_24  14 knprisqreLAe 25 
                 +n+ri+   L+e
  EHU01838.1 199 QNARIPVLALCE 210
                 599999988876 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00024      0.25      12      32 ..      37      57 ..      34      61 .. 0.91
   2 ?   -2.6   0.0       7.5   7.9e+03      27      38 ..      94     105 ..      91     111 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00024
      HTH_26 12 tkseLargtgisaatlsrlvk 32
                +++eLar +g+s+at+srl+k
  EHU01838.1 37 NSAELARLSGVSKATVSRLFK 57
                789****************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.5
      HTH_26  27 lsrlvkgkperv 38 
                 lsr++k+++ ++
  EHU01838.1  94 LSRHYKQEMANL 105
                 566666665544 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00057       0.6      20      40 ..      38      58 ..      19      61 .. 0.87
   2 ?   -1.0   0.1       1.6   1.7e+03       5      20 ..     185     200 ..     183     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00057
      HTH_23 20 vreIAreLgvsrrTvyrwlkr 40
                 +e Ar+ gvs+ Tv+r  kr
  EHU01838.1 38 SAELARLSGVSKATVSRLFKR 58
                57899*************999 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
      HTH_23   5 reRlrillllaeGlsv 20 
                 r+R ri++ l + l  
  EHU01838.1 185 RRRTRIIQPLMQQLQN 200
                 7999****99985554 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00067      0.71      18      35 ..      39      56 ..      35      63 .. 0.92
   2 ?   -1.9   0.0       4.4   4.6e+03       4      11 ..      69      76 ..      66      93 .. 0.87
   3 ?   -3.0   0.0       9.5     1e+04      44      53 ..     118     127 ..      99     128 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00067
      HTH_31 18 eevAerlgvsestlsrlE 35
                +e+A+++gvs++t+srl 
  EHU01838.1 39 AELARLSGVSKATVSRLF 56
                79**************95 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.4
      HTH_31  4 alLralRe 11
                ++Lr+lR+
  EHU01838.1 69 DELRTLRQ 76
                68999996 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 9.5
      HTH_31  44 pavlealara 53 
                  +v+++la+a
  EHU01838.1 118 ADVIAQLAQA 127
                 4577777776 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.47     5e+02       1      10 [.      11      20 ..      11      25 .. 0.82
   2 ?    7.8   0.0    0.0027       2.8      24      43 ..      39      58 ..      35      59 .. 0.89
   3 ?   -2.8   0.0       5.5   5.8e+03      10      23 ..      68      81 ..      68      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.47
      HTH_38  1 kykhLsleeR 10
                +y +Lsl+e 
  EHU01838.1 11 HYPQLSLQEQ 20
                699*****97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0027
      HTH_38 24 reIArrLgrspsTIsRElkR 43
                +e Ar+ g+s+ T+sR  kR
  EHU01838.1 39 AELARLSGVSKATVSRLFKR 58
                799*************9887 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.5
      HTH_38 10 ReeIerllaeGlsl 23
                R e+ +l++ G+ l
  EHU01838.1 68 RDELRTLRQSGMPL 81
                66888999999987 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00041      0.43      16      47 ..      39     183 ..      35     192 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00041
                    HHHHCCTT--HHHHH................................................................................. CS
  Phage_CI_repr  16 keLAdlLgiakssvs................................................................................. 30 
                     eLA l g++k++vs                                                                                 
     EHU01838.1  39 AELARLSGVSKATVSrlfkrlgydkykdmrdelrtlrqsgmpltdnrdavqgntllsrhykqemanltqwvnsidpqqfadviaqlaqakriyivg 134
                    69*************888888888888888888887777777777777777777777777777777777777666666666666666666666666 PP

                    ................................HHHHSSS--HHHHHHHH CS
  Phage_CI_repr  31 ................................twvrRdffPgdvvvtca 47 
                                                         d +P d+vv +a
     EHU01838.1 135 mrnaypvalhlrqqliqtraqvhilpqpgqtlAEDLVDITPEDMVVVIA 183
                    6666666666666666666666666666663322334666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2033.46
//
Query:       EHU01839.1  [L=261]
Description: putative periplasmic substrate-binding component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-51  173.0   0.0    8.3e-51  172.6   0.0    1.2  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    5.3e-05   23.4   0.0     0.0032   17.6   0.0    2.3  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
    0.00048   20.1   0.0    0.00076   19.5   0.0    1.3  1  NMT1             NMT1/THI5 like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   0.0   1.4e-54   8.3e-51       1     224 [.      35     252 ..      35     253 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.6 bits;  conditional E-value: 1.4e-54
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 lrv+v +d+pPf+ + ++ +++G+d+d+ak +ak++++k+++vpvs ++++p l++ kvD++i+++  +peRe+++dFs+ y    ++++ +k+d    
  EHU01839.1  35 LRVAVPQDFPPFGSVGTDLQPQGYDIDMAKYLAKQMKLKLQLVPVSSANRVPYLQTDKVDLVISSMGKNPEREKVIDFSRAYAPFFLGVFGPKGD---- 129
                 79******************************************************************************************976.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseL 198
                   +k++a L+gk+vgv++g + +  l e ++k+a+++++++++  l a  +g+v++v++ + v+a ++++np+k  v+ +  l +++++i+++k++++L
  EHU01839.1 130 -HLKDPAALSGKSVGVTRGAVEDMVLSEVAPKDAQVKRYEDNNTTLSAYLSGQVQYVATGNLVVAAITRQNPAKAPVA-QFMLKDSPCYIGLKKDEPAL 226
                 .599*****************99999998888**********************************************.******************** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 199 rkainkalaelkadgtlakisekWfg 224
                 ++++n+ +++ ++dgtl+k+se+W++
  EHU01839.1 227 KEKVNALIDQGIKDGTLNKMSEEWLK 252
                 ************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.4e-07    0.0032      29     103 ..      56     117 ..      46     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.4e-07
                      ESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESE CS
  Lig_chan-Glu_bd  29 eGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfm 103
                      +G+ id+ k lak++++k +l  v+         +       +  l ++k+dl+++++  ++eRe+v+dF++++ 
       EHU01839.1  56 QGYDIDMAKYLAKQMKLKLQLVPVSS-------ANR------VPYLQTDKVDLVISSMGKNPEREKVIDFSRAYA 117
                      67777777777777776666655542.......223......5678899**********************9986 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00076      19     145 ..      70     186 ..      65     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                 TTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT- CS
        NMT1  19 eGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgspfekallkallakdgg 117
                   l++++v+ +  ++ ++++ ++k+d+ +s++ +      +  +v  + + +   + g++  k++ +k+p+ L Gk +g++ + +e+++l+++  kd  
  EHU01839.1  70 MKLKLQLVPVSS-ANRVPYLQTDKVDLVISSMGKNP----EREKVIDFSRAYAPFFLGVFGPKGDHLKDPAALSGKSVGVTRGAVEDMVLSEVAPKDAQ 163
                 568888988766.999***************99766....667788888888888***************************99****99998877654 PP

                 -GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1 118 dpsdvtlvnvggtslakalltgkvDaai 145
                   + ++  n   t l +a l+g+v+ + 
  EHU01839.1 164 -VKRYEDNN---TTL-SAYLSGQVQYVA 186
                 .56666533...344.378899988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2046.14
//
Query:       EHU01840.1  [L=221]
Description: putative permease component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-20   72.1  10.7    6.5e-20   71.6  10.7    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6  10.7   3.6e-24   6.5e-20       1     182 [.      35     215 ..      35     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.6e-24
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   g+ +Gi+ a     + ++l++l  +++++++ +P++v ++++v+ + +l+   ++  ++++++l+ +++y + i+ra++++ pk+++ea r+lG++r
    EHU01840.1  35 GVSIGIIGAalrSGKPSWLSRLWGIYVELIRNTPFVVQLFFIVFGLPNLGLKLTAGEAALLAMLVNLGAYSTEIIRAGIQVTPKGQWEAGRVLGLTR 131
                   6788999888888999***************************7777775555677779************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                    q+f +vvlP +l  i + l+ + ++++ g+++++ +        l++ a+l++  ++ s+ ++ ++++++l+l++v++ l  ++ ++
    EHU01840.1 132 SQTFLRVVLPPSLQRIYPALVSQCIIVMLGSSVVSQVS----YEELTFAANLIQSRTFLSFEVYSVTTLIYLALSIVMRQLLLAIGRK 215
                   **************************************....8999999999999999999*****************9988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1647.90
//
Query:       EHU01841.1  [L=219]
Description: putative permease component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-15   55.0   8.6    8.2e-15   55.0   8.6    1.5  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.11   1.9e+03     103     128 ..      11      36 ..       8      41 .. 0.64
   2 !   55.0   8.6   4.6e-19   8.2e-15      10     183 ..      44     213 ..      28     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.11
  BPD_transp_1 103 lPnalppiitglilafggllggavll 128
                   ++n+l  +  +++l+++++lgg++++
    EHU01841.1  11 VRNLLLAARWTIALSLVAFLGGTLVT 36 
                   56666666666667777777776665 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 4.6e-19
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPna 106
                   l ++k+l++++r ++++++++P +  ++l ++ + +++i    ++++ ++l++++ +y + i  + +++lpk+++ea+r lG++  q++ +v+ P+a
    EHU01841.1  44 LLKRKWLTRIIRAYTELFQGTPLLMQLFLAFFGVGLFGIDVAPWTAASLALTFYTSAYLLDIWHGSIQALPKGQWEASRCLGLNFGQTLTRVIAPQA 140
                   6689*********************666666333344444455666889999********************************************* PP

  BPD_transp_1 107 lppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   ++ +i+  +  ++ +++g++l++++g    +  l+   ++ +++++  + ++  +++ ++l++  +    ++l++++
    EHU01841.1 141 IRIAIAPTVGFAVQVIKGTALASIIG----FVELTKAGTILNNVTYQPFKVFGLVALGYFLMCYPLSRYSQYLEKKF 213
                   **************************....99999999999999988844555566677888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1602.36
//
Query:       EHU01842.1  [L=243]
Description: putative ATP-binding component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-35  121.2   0.0    5.7e-35  120.8   0.0    1.2  1  ABC_tran     ABC transporter
    2.8e-11   43.8   0.4    1.8e-05   24.7   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    7.8e-10   38.6   0.0    1.1e-09   38.0   0.0    1.2  1  SMC_N        RecF/RecN/SMC N terminal domain
    3.6e-05   23.4   0.1    7.4e-05   22.4   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
    0.00066   20.0   0.7     0.0079   16.5   0.7    2.1  1  AAA_22       AAA domain
     0.0017   17.2   0.9        2.5    6.8   0.1    2.9  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0058   17.0   0.2      0.012   16.0   0.2    1.6  1  AAA_16       AAA ATPase domain
      0.006   15.8   0.1      0.028   13.6   0.1    1.9  1  NB-ARC       NB-ARC domain
  ------ inclusion threshold ------
      0.011   16.3   0.1      0.017   15.6   0.1    1.5  1  AAA_23       AAA domain
      0.019   14.8   0.1      0.036   14.0   0.1    1.5  1  RsgA_GTPase  RsgA GTPase
      0.026   14.2   0.0      0.071   12.8   0.0    1.7  1  AAA_30       AAA domain
      0.049   13.2   0.1       0.76    9.3   0.0    2.3  2  AAA_25       AAA domain
      0.054   13.6   0.0      0.095   12.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
      0.081   12.9   0.1         11    6.0   0.0    2.3  2  AAA_5        AAA domain (dynein-related subfamily)
      0.084   12.6   0.0       0.11   12.2   0.0    1.2  1  AAA_15       AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   4.7e-38   5.7e-35       1     137 []      19     167 ..      19     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 4.7e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTC... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxx... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..........esdee... 84 
                 lk v+l++  ge++ i+G++G+GKStLl+++ gl+  + G+i+l g  +++   + ++ ++++g+++q+ +lfp++t+ en          +s++e   
  EHU01842.1  19 LKGVDLDIDMGEVISIIGRSGSGKSTLLRCMNGLEGYQDGSIKLGGMTITDrdSQAREISRSVGMVFQNFNLFPHMTALENvmlaprrvlkKSQAEcre 117
                 789**********************************************998878889999****************************9966666333 PP

                 .HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++++l+k+gl     +++++ pssLSgGq+qrva+aral+ +p++ll+DE t+
  EHU01842.1 118 lAARMLEKVGL----GERLDYYPSSLSGGQQQRVAIARALAMEPRVLLCDEITS 167
                 35555555555....55899999****************************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.1e-06    0.0026       3      32 ..      33      57 ..      31      98 .. 0.74
   2 !   24.7   0.0   1.5e-08   1.8e-05     234     298 ..     136     197 ..     116     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.1e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegl 32
                 +iG+ gsGKS+LL+++ +l ++     ++
  EHU01842.1 33 SIIGRSGSGKSTLLRCMNGLEGY-----QD 57
                59****************99543.....22 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.5e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 +++lS G+++  a++ al+  +   ++ll DE+ + L+P+l+ ++l++l++l+++g  +il+TH 
  EHU01842.1 136 PSSLSGGQQQRVAIARALAMEP---RVLLCDEITSALDPELVGEVLKVLEQLAAEGMTLILVTHE 197
                 5678999999989999999888...***************************************5 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   9.4e-13   1.1e-09      25     208 ..      30     208 ..       6     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 9.4e-13
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSS.SCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiek.eevsisrrvkrkgeseykingkevtkke 122
                 ++ +i+G+ GSGKs ll  +  + G ++  +++   ++  i+ ++++a+  + +v ++f+n +   ++++ e+v +  r + k +s+ +  +  ++  e
  EHU01842.1  30 EVISIIGRSGSGKSTLLRCMNGLEGYQDG-SIKLGGMT--ITDRDSQAREISRSVGMVFQNFNLFPHMTAlENVMLAPRRVLK-KSQAECRELAARMLE 124
                 3779****************999998887.77766654..677799999999*********9998444441445554444443.346777888888888 PP

                 HHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxx RF
       SMC_N 123 vsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dkl 208
                    l e+ + ++++LSgG+++ va+a  +A++   p+ + l Dei +aLD + v +v ++l++   + + +i ++++ ++ +++ d++
  EHU01842.1 125 KVGLGERLDYYPSSLSGGQQQRVAIARALAME---PR-VLLCDEITSALDPELVGEVLKVLEQLAAEgMTLILVTHEMNFARDVgDRV 208
                 8889999999****************999875...44.4577********************98877699999***999988764544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.2e-08   7.4e-05      12      39 ..      19      46 ..      15      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.2e-08
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTll 39
                ++g +++id+ +++ ++G+sGsGKSTll
  EHU01842.1 19 LKGVDLDIDMGEVISIIGRSGSGKSTLL 46
                6778999**888***************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.7   6.6e-06    0.0079       7     128 ..      31     194 ..      27     202 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.6e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.......................................erpevv..fvtlpsstsskdllrellral 64 
                 ++ ++G sG+GK+tllr +         ++                                        e++ ++  +v  +s+ + ++l+ ++l+++
  EHU01842.1  31 VISIIGRSGSGKSTLLRCMNGLEGY---QDGsiklggmtitdrdsqareisrsvgmvfqnfnlfphmtalENVMLAprRVLKKSQAECRELAARMLEKV 126
                 689**************99887632...33344688999998888888888777777766666655554433333355555555556666666666666 PP

      AAA_22  65 glelka..erlsseellealeqalrarav.ielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliLv 128
                 gl+     ++ s++   ++    +ra a+ +++l+ DE+   l+ +   e+l+ L +l   +  g++liLv
  EHU01842.1 127 GLGERLdyYPSSLSGGQQQRVAIARALAMePRVLLCDEITSaLDpElvGEVLKVLEQL---AAEGMTLILV 194
                 6533336633333333333333333333356699999998888431333333333222...3466666666 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0021       2.5     242     264 ..      26      49 ..      14      54 .. 0.85
   2 !    6.8   0.0    0.0022       2.6     324     353 ..     140     169 ..     133     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0021
                 E-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAl 264
                 i  G v+ I+G+   GKsTLL+ +
  EHU01842.1  26 IDMGeVISIIGRSGSGKSTLLRCM 49 
                 6677799**************986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0022
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAt 353
                 SG   q ++i++al ++ ++lL DE tsA 
  EHU01842.1 140 SGGQQQRVAIARALAMEPRVLLCDEITSAL 169
                 8999999999***************99995 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     1e-05     0.012      24      85 ..      29      94 ..      16     203 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipy..salaqalareellrql 85
                +e++ ++G sG+GKs+l+r+    le+        gg +++ +  q  ++i++   ++ q +    l+  +
  EHU01842.1 29 GEVISIIGRSGSGKSTLLRCMNG-LEGYqdgsiklGGMTITDRDSQA-REISRsvGMVFQNF---NLFPHM 94
                48899**************9985.33333666766555555555555.33333212244444...333333 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   2.3e-05     0.028      18     167 ..      28     225 ..      14     236 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.3e-05
                 SCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE............................................EEES.XXHHHHHHHX CS
      NB-ARC  18 lqslvvalvGmgGvGKttlakqilnksdevegrFdsvawv............................................vvsk.tdkseeilet 71 
                 ++  v+++ G+ G+GK+tl++ ++     +eg  d+ + +                                            v+ k + + +e+  +
  EHU01842.1  28 MG-EVISIIGRSGSGKSTLLRCMNG----LEGYQDGSIKLggmtitdrdsqareisrsvgmvfqnfnlfphmtalenvmlaprrVLKKsQAECRELAAR 121
                 44.69**************986543....4666666666666666666666666666666666666666666666666666665443312334456666 PP

                 XHHHHHCCCTTSSSS-STTS....HHHHHHHHCCCTTEEEEEEEE-SHHHH.....HHHH....CHTTSEEEEEESBCCCCCCS-S-.EEEEEESS--H CS
      NB-ARC  72 ilkeLslseddleekeeves....lkrklvrlLltkrfllvlDDVweeedwdkigvvlpa....renrlrvllTTRdeevanavsat.sekievelLek 161
                 +l++++l e  +   +++ s        + r+L     +l+ D +    d + +g vl+       +++  +l T +++ a  v+++   +++ ++ e+
  EHU01842.1 122 MLEKVGLGERLDY-YPSSLSggqqQRVAIARALAMEPRVLLCDEITSALDPELVGEVLKVleqlAAEGMTLILVTHEMNFARDVGDRvVFMHQGRVWEQ 219
                 6666666533333.3333333544555666666666556666666666554444444332000133456666666666666666666555556666666 PP

                 HHHHHH CS
      NB-ARC 162 deawel 167
                  ++ +l
  EHU01842.1 220 GDSKTL 225
                 665555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   1.4e-05     0.017      20      40 ..      30      50 ..       4      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 +  I+G  G+GK+T+l+++ 
  EHU01842.1 30 EVISIIGRSGSGKSTLLRCMN 50
                5889**************985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     3e-05     0.036     100     123 ..      30      53 ..       9      84 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
                  SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpel 123
                  +++ ++G SG GKStL+  +++ +
   EHU01842.1  30 EVISIIGRSGSGKSTLLRCMNGLE 53 
                  78899************9988754 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     6e-05     0.071      20     122 ..      31     194 ..      26     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaa..ggrviglAptgk..aAkvLaeelgieastiakllkrlk................................. 81 
                 v  + G+ G+GK+t+l+ ++ +   +    ++ g++ t +  +A+++++++g+  ++ + + + ++                                 
  EHU01842.1  31 VISIIGRSGSGKSTLLRCMNGLEGYQdgSIKLGGMTITDRdsQAREISRSVGMVFQNFNLFPHMTAlenvmlaprrvlkksqaecrelaarmlekvglg 129
                 66799*************976555442056676777776522677799999998888888777777777888888888888888888888888888888 PP

      AAA_30  82 ....................grarlepgtllivDEagmv.dtkqlaallkaaek...agakvilv 122
                                     +ra   + ++l+ DE+  + d + + ++lk +e+   +g+++ilv
  EHU01842.1 130 erldyypsslsggqqqrvaiARALAMEPRVLLCDEITSAlDPELVGEVLKVLEQlaaEGMTLILV 194
                 88888888888888888876433444448888888765546555555555444421157777776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00064      0.76      30      50 ..      26      46 ..      15      50 .. 0.87
   2 ?    1.6   0.1      0.15   1.8e+02     163     188 ..     172     196 ..     111     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00064
      AAA_25 30 lpagelallaGapgtGKttla 50
                + +ge++ ++G++g+GK+tl+
  EHU01842.1 26 IDMGEVISIIGRSGSGKSTLL 46
                789****************97 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.15
      AAA_25 163 sdvgalvealeriarrtgaavllvhH 188
                 + vg++++ le++ ++ g +++lv H
  EHU01842.1 172 ELVGEVLKVLEQL-AAEGMTLILVTH 196
                 3479999999999.588999999999 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     8e-05     0.095       2      21 ..      32      51 ..      31      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8e-05
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                + i+Gr+ +GKStL++ + g
  EHU01842.1 32 ISIIGRSGSGKSTLLRCMNG 51
                78*************98765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.021        26       4      19 ..      34      49 ..      32      56 .. 0.87
   2 ?    6.0   0.0    0.0095        11      64      91 ..     151     183 ..     120     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.021
                EE--SSSSHHHHHHHG CS
       AAA_5  4 LvGppGtgKselaerl 19
                ++G +G+gKs+l + +
  EHU01842.1 34 IIGRSGSGKSTLLRCM 49
                79**********9865 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0095
                 -....G-SEEEEESGGG--.HHHHHHHHHHHHS CS
       AAA_5  64 r....egeilvlDEverae.sevlnsLlsllee 91 
                 r    e+++l+ DE++ a  +e ++++l++le+
  EHU01842.1 151 RalamEPRVLLCDEITSALdPELVGEVLKVLEQ 183
                 244479************99*********9986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.3e-05      0.11      17      43 ..      24      49 ..      19      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.3e-05
      AAA_15 17 veidlseeltvliGkNnsGKSsileal 43
                 +id+ e +  +iG+ +sGKS++l+ +
  EHU01842.1 24 LDIDMGE-VISIIGRSGSGKSTLLRCM 49
                5788889.****************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1810.09
//
Query:       EHU01843.1  [L=411]
Description: serine--pyruvate aminotransferase / L-alanine:glyoxylate aminotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-27   95.6   0.0    2.4e-26   92.6   0.0    1.9  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   1.3e-30   2.4e-26       3     342 ..      16     359 ..      14     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.3e-30
                  EBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHG CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvteaehh 99 
                  l+ +++ +  ++Vl+a++ ++           +++   +t+ ++e+ +  + ++ +e+   ++ + Gt++ +i++++ls+   ++pgd+++v + +  
   EHU01843.1  16 LMGPGPINADPRVLRAMSSQLL----------GQYDPAMTHYMNEVMALYRGVFRTEN-RWTLLIDGTSRaGIEAILLSA---IRPGDKVLVPVYGRF 99 
                  6677777777777777777744..........444455699999999999*******7.***********99********...9************** PP

                  GGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEE CS
  Aminotran_5 100 anlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfla 196
                  + l    e+a+r+ a+v+ i + ++   ++d++e++++  k++l+   +  ++t ++qp++e+g+++kk+g+l+ +Da++++    ++++++g+D ++
   EHU01843.1 100 GHL--LCEIARRCRADVHTIAVPWGEVFTPDQIEDAIKkVKPRLLLTVQGDTSTTMLQPLAELGAICKKYGVLFYTDATASLAGNALETDAWGLDAVS 195
                  ***..789*****************************8579********************************************************* PP

                  EETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEE...............EHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHH CS
  Aminotran_5 197 fsghK.llgPtGiGvlyvrkellekleplllggemveevsleett...............faeapskfeaGTpnvagiiglgaaleyleeigleaiek 278
                  ++ +K l gP+G++ +  ++e+   +++ +   + +++   ++                     p ++++ T+ + ++ g ++ ++++ + gl++  +
   EHU01843.1 196 AGMQKcLGGPSGTSPITLSDEMAAVIRQRKCVEQGIRTDAHQDGDdemiysnyfdlgmimDYWGPERLNHHTEATSALFGARECARLILQEGLDNGIA 293
                  *****9999************99999776666555544444333335567777777765533458899999*************************** PP

                  HHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE.TTCSHHHHHHHHHHT.TEEEEE..E-TTT CS
  Aminotran_5 279 hekelaeyllerlkslpgvrlygpdkaerrasivsfnf.kgvhaedvatlLdee.gIavrs..Ghhca 342
                  ++k   e++l++++ ++  ++ g d  ++ ++++ +++ +gv+ ++v++l+ e  gI++ +  G  + 
   EHU01843.1 294 RHKLHGEAMLKGIQGMGLETF-G-DLSNKMSNVLGVVIpQGVNGDEVRKLMLEDfGIEIGTsfGPLHG 359
                  ****************99988.7.7899**********999**********9999**99776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3025.34
//
Query:       EHU01844.1  [L=417]
Description: N-carbamoyl-L-amino acid hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-25   89.5   0.1    3.1e-25   89.1   0.1    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    4.1e-06   26.6   0.0    7.2e-06   25.8   0.0    1.4  1  Peptidase_M28  Peptidase family M28
    6.7e-05   22.8   0.0    0.00013   21.9   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.1   5.2e-29   3.1e-25       1     205 [.      82     410 ..      82     412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 5.2e-29
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHH....HHHT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx....xxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakalle....glee 87 
                    llgsHlD+V     ++           G+++G        gvl+a+e ++ l+d++ +++  i+++ ++dEEg+r      G++ +++    +   
     EHU01844.1  82 LLGSHLDTVR----NA-----------GRYDGM------LGVLSAIETVQWLHDRQRRLPLAIEIIGFGDEEGTRfgitlLGSRGITGtwpdS--W 154
                    79********....66...........999999......*********************************999899999999999955552..0 PP

                    ...............................TTCESEEEEEEEESSSBTCHSTETEEEE..................................... CS
                    ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
  Peptidase_M20  88 ...............................rekvdavfelhieepgileagklaigvv..................................... 115
                                                     ++ a++elhie+++ le++ la gvv                                     
     EHU01844.1 155 sthpdgngitvaqamqdvgldasqisraarnVSDIVAYLELHIEQGPCLEQEDLALGVVtaingarrlnccftgeaghagtvpmahrkdalaaaae 250
                    55577888888889999999999999998776699999********************************************************** PP

                    .......................................................................EEEEEEEEEESHEEECCHHHHHHHH CS
                    .......................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 .......................................................................kvevelleggapvtlndsplvkala 140
                                                                                           +++ +++ + a+++++ + l +al+
     EHU01844.1 251 wmvfiehttrdqtsplvatvgtlncapgavnvipgevhlsldvrgpedaplesllsslltqaeaialrrglTFSAQEYYRIAATACD-AGLQQALS 345
                    ********************************************************************9877888877888888888.******** PP

                    HHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 141 eaaeelfgekvelivsgpggtdarffagi.ptvmifgpgs.glaHspnEyvdledlekgikvlarll 205
                     a+e + g +    +sg +g+da  +a+  p  m+f+++  g++H+p E v+++d++ +++++ +++
     EHU01844.1 346 HAVETVQG-RCLALPSG-AGHDAIAIAERwPVGMLFVRNHrGISHHPAESVNEADVAPAVQAYLQTI 410
                    *****966.55556899.********6666*******8856**********************9987 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.2e-09   7.2e-06       1      82 [.      66     147 ..      66     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.2e-09
                    EEEEEESTTCE.SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHH CS
  Peptidase_M28   1 Nviatlegkat.devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafa 82 
                    N+ +++ + ++ +  lllg+H+D+v         G  D   gv + +e+++ l ++++r+   + ++ f+ EE       llGS+   
     EHU01844.1  66 NICGRYDAAQPgAPALLLGSHLDTVRN---A---GRYDGMLGVLSAIETVQWLHDRQRRLPLAIEIIGFGDEEGtrfgiTLLGSRGIT 147
                    888999888887789***********6...6...889******************9999***************99999999999765 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.1e-08   0.00013       4     104 ..     217     315 ..     214     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.1e-08
                 -EEEEEEEEEE-B-EEGG.-T.TTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHH CS
   M20_dimer   4 kGlaggkitvkgkagHsg.ap.gagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeiee 99 
                  G+   ++ ++g+agH+g  p  +  +A+ ++a+ +  +e++++d+     +++   +v+++++   a nvip+e+++++d+R +    +e++l  + +
  EHU01844.1 217 NGARRLNCCFTGEAGHAGtVPmAHRKDALAAAAEWMVFIEHTTRDQ-----TSPLVATVGTLNCAPgAVNVIPGEVHLSLDVRGPEDAPLESLLSSLLT 310
                 5777788889********966145567***************8875.....599999999999999*****************9999999999888877 PP

                 HHTSC CS
   M20_dimer 100 ileke 104
                  +e+ 
  EHU01844.1 311 QAEAI 315
                 77765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3256.66
//
Query:       EHU01845.1  [L=164]
Description: uricase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-38  133.1   6.6    1.3e-38  133.0   6.6    1.0  1  OHCU_decarbox  OHCU decarboxylase
  ------ inclusion threshold ------
      0.011   14.5   5.4      0.014   14.2   5.4    1.2  1  DUF935         Protein of unknown function (DUF935)
      0.054   13.3   1.3      0.065   13.1   1.3    1.1  1  SpoIIIAH       SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   6.6   2.1e-42   1.3e-38       1     155 []       7     160 ..       7     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 2.1e-42
                    HCS-HHHHHHHHCCCSTTHHHHHHHHHCGS-SSHHHHHHHHHHHCCCS-HHHHHHHHCTS--TTSCCCHHTHCHHHHHHHCCCTTTTCHHHHHHHH CS
  OHCU_decarbox   1 nalseeeltavldtlfepspwlaelalarpfssyeaLiaavaealealseeelleilsaHPrLGekaakkkklsalsrkEqaglglaaseeeleeL 96 
                    n+l+e+++  +l++++    w  +l++arpf+s++aL+a +++  ++++e++l+++lsaHPr+Geka+ ++k+++lsr+Eqa+++ +a+++ ++++
     EHU01845.1   7 NQLPEAAAQLALSHCVALPHWQLALVAARPFHSLDALLAEAQRLTQDWQEDDLNQALSAHPRIGEKAQGNEKEKQLSRSEQAAMQ-HADDALHQAM 101
                    799***************************************************************999****************.********** PP

                    HHHHHHHHHHHSS-----GCC--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  97 aelnaeYeekFGlrfvvfvngrsrkeIlaelerRlendpekElrealqemckIardRlk 155
                     + n++Ye++F  +f++ ++grs++ +l+el rRl+n+pe+E +eal+++++I+ +Rlk
     EHU01845.1 102 VRGNQAYEARFKRVFLIRAKGRSAQTLLDELTRRLDNSPETEQQEALAQLREITLLRLK 160
                    *********************************************************96 PP

>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   5.4   2.3e-06     0.014     432     509 ..      71     151 ..      28     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-06
      DUF935 432 kaaa...alaaaaaaeaaeqdaldaladealeeaeaalepllapvlelleeaesleelrerlaelypdmdaeelaelLara 509
                 ++a+   ++++ ++ e+a+ +  d+++++a+ + ++a e+ +++v+ + +++ s + l+++l + +++  ++e +e+La++
  EHU01845.1  71 EKAQgneKEKQLSRSEQAAMQHADDALHQAMVRGNQAYEARFKRVFLIRAKGRSAQTLLDELTRRLDNSPETEQQEALAQL 151
                 2222333333334444444455555555555555********************************************986 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.3   1.1e-05     0.065      51     152 ..      57     161 ..      32     163 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX...XXXXXXXXXXX--HHHHHHHHHHHHHHHHH..HHHHHHHT-TTS-HHHHHHHHHHHHH CS
    SpoIIIAH  51 kdessaasaeaesssetesesseks...diassdedeadeltsetasaaasasdyfaeakleReqkrsknk..etLqeiinnenlseeekqeAqqqlle 144
                 +d ++a sa +   ++++++++ek+    +++  + ++d+l +++   +++ ++ f+ + l R++ rs +   ++L      +n+ e+e+qeA +ql e
  EHU01845.1  57 DDLNQALSAHPRIGEKAQGNEKEKQlsrSEQAAMQHADDALHQAMVRGNQAYEARFKRVFLIRAKGRSAQTllDELTRR--LDNSPETEQQEALAQLRE 153
                 33333333333333333333333320003333333344449999**99*******************988511444444..4557788999******** PP

                 HHHHHHHH CS
    SpoIIIAH 145 ltekeeke 152
                 +t    ke
  EHU01845.1 154 ITLLRLKE 161
                 99877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1390  (0.077528); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1262.43
//
Query:       EHU01846.1  [L=111]
Description: transthyretin-like protein precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-31  109.6   0.0    1.4e-31  109.4   0.0    1.0  1  Transthyretin  HIUase/Transthyretin family


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   7.8e-36   1.4e-31       1     110 []       4     110 ..       4     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 7.8e-36
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESSSSEEGCGB-SEEEEEEEEHHHHHHHTTS..SESCEEEEEEES.TTSEEE CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvkellaekeeleagtyklrfeteeYfekegtesffpevevvfevk.eeehyh 95 
                    i+th+Ldt+ Gkpa gv++ le+++ +   ++ +a+++td+dGr+k+l++  e l++g+y+l+ ++++Yf++ g+e+++   ++ f ++ +++hyh
     EHU01846.1   4 ISTHILDTALGKPAPGVAMLLEQHTAQG--WTPCAQGVTDNDGRLKDLTP--EPLAPGQYRLTADIGAYFRADGRETLYVSAQIDFVLTeSGSHYH 95 
                    89********************987765..*******************9..9************************************666**** PP

                    EEEEEETTEEEEE-B CS
  Transthyretin  96 vPlllspfgYstYrG 110
                    +P+l+sp+++stYrG
     EHU01846.1  96 LPFLISPWSWSTYRG 110
                    **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 901.53
//
Query:       EHU01847.1  [L=459]
Description: RNA-directed DNA polymerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-43  146.4   0.0    1.7e-42  145.4   0.0    1.5  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.2e-17   63.7   4.0      3e-17   62.4   4.0    1.7  1  GIIM      Group II intron, maturase-specific domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   1.9e-46   1.7e-42       1     221 [.     115     320 ..     115     321 .. 0.95
   2 ?   -3.7   0.0      0.75   6.7e+03     103     118 ..     385     400 ..     374     416 .. 0.50

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1.9e-46
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ipK+g g+ R +++++v ++++++++ + L+++l++++se+++gfrpgr   dav  ++++  ++ + ++++++Dl+k+Fd+v+++ l+ +l +   + 
  EHU01847.1 115 IPKPG-GGQRELGIPTVTDRLIQQALLQVLQPLLDPTFSEHSYGFRPGRRAQDAVLAAQAF--AQSGRRVVVDVDLEKFFDRVDHDILIGRLRKRIDDA 210
                 8****.***********************************************88666666..88*****************************88888 PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                  +i l++++l     ++ ++g   + +  k g+pqG++lSPll+n++++e+++el++r  g  ++rYaDD+ ++++s+ + q+++  +++ +++ +lk+
  EHU01847.1 211 GVIWLVRAYL----NAGIMDGG--TIIQRKLGTPQGGPLSPLLANVLLDEVDKELERR--GHSFVRYADDCNVYVNSRRAGQRVMALLVRLFNRLKLKV 301
                 8999999999....67789997..79999****************************8..*************************************** PP

                 EGGG-EEE.....ESSEEETTEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvt 221
                 n++K+ ++    ++ + k+LG+ 
  EHU01847.1 302 NEAKSAVA----SAFTRKFLGYA 320
                 ********....599******96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.75
                 ................ CS
       RVT_1 103 nliksflstrsfsvrv 118
                 ++++++l++r  ++++
  EHU01847.1 385 KTLEEWLRHRLRALQL 400
                 3344444444433333 PP

>> GIIM  Group II intron, maturase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   4.0   3.4e-21     3e-17       2      72 ..     339     409 ..     338     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.4e-21
        GIIM   2 krlkrkireltkrsskgvsleelirklnpilrGWanYyrlgvakrvfskldhyirrrLrrwllrkhkkkk.r 72 
                 +++++++r+lt+r+  g s+ e+i++l p+l GW +Y++l+++ rv ++l++++r+rLr+  l+++++ +  
  EHU01847.1 339 AAFRHRVRKLTQRN-GGRSMTEVIQRLRPYLLGWRAYFSLAQTPRVWKTLEEWLRHRLRALQLKQWRRGTtM 409
                 78*********777.99**************************************************96642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3900.67
//
Query:       EHU01848.1  [L=257]
Description: carbon-nitrogen hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-31  109.5   0.2      2e-31  109.3   0.2    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.2   1.1e-35     2e-31       2     260 ..       6     241 ..       5     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 1.1e-35
                   EEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEEE CS
  CN_hydrolase   2 vAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklqaynta 98 
                   +++ Q+p +++d eanl +  +l+a     + d+i+lPE+f tg+  ea   ++    + +++ +l++ a++ + +v +  +    t+      n+ 
    EHU01848.1   6 ITLLQAPLTWMDGEANLRHFDNLLAD--MTDRDVIILPEMFTTGFAMEAAQQAL---PQQQVVTWLHRHAKRTNALVGGSAAIH--TPAGA--VNRF 93 
                   57899***99****************..45889************766666664...556**************9999998887..78888..9*** PP

                   EEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHHHH CS
  CN_hydrolase  99 vlldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwellg 195
                   +l++++g+l   y+K+hLf        a e   + +g++ +v++ ++++i  +iCy+ +fp ++r   +++ ++ ++++     + ++ + +w++l 
    EHU01848.1  94 LLVEPNGTL-HHYDKRHLF------RMADEQQHYVAGTARTVIQWRGWRILPQICYDLRFPVFSRN--QNDYDLALYVA----NWPAPRALHWQALL 177
                   ********6.*********......689999999999999*************************5..66666666634....6889********** PP

                   HHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 196 raralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                    ara+en+ fv+ +n+vg    ++ ++ g S ii+p+G++la+   ++ g + + + lad++a+r
    EHU01848.1 178 LARAIENQAFVAGCNRVGS-DGNQHQYSGDSQIISPQGEVLAAGEPFTAGKVETSLSLADLQAYR 241
                   *******************.9999**************************999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1913.44
//
Query:       EHU01849.1  [L=386]
Description: methionine aminotransferase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-55  186.2   0.0    1.1e-54  186.0   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
      1e-05   24.3   0.0    1.5e-05   23.7   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00087   18.3   0.0     0.0014   17.6   0.0    1.4  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.032   13.5   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   0.0   2.5e-58   1.1e-54       2     363 .]      31     383 ..      30     383 .. 0.93

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 2.5e-58
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    + inL+++ +++d      p+ ++      + ++++n+y p++g++ l+ea+a+     +    + ++ ++v+ Ga++++ a+i++l + pgde++
     EHU01849.1  31 NAINLSQGFPDFD----G-PRYLQDRLA-YHVSQGANQYAPMTGAQPLREAIADKTAALYDYRPDVNSDITVTAGATEALYAAITAL-VRPGDEVI 119
                    5699999999999....4.444444444.59999*********************99888888888889******************.9******* PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                     +dp+y+sy ++++l+gg + r  l+ +++f +d+ a+ ++l++      kt+++++++phNP+ +v+  +++ +l + +  +++++++De+Y++ 
     EHU01849.1 120 CFDPSYDSYAPAVQLAGGVLKRLTLQ-PPTFAVDWPAFSALLSD------KTRLVILNTPHNPSASVWHQADYAALWQAIADREIYVLSDEVYEHI 208
                    ************************66.9****************......********************************************** PP

                    BSSSSHTHHHHGGSTTSTT....EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepn....llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqk 283
                    +f   +    +a v ++p+     + v+s++K f ++G+ vGy+++ aa+   +rk+++ +++   +++q a+a +l+  ++   +  e  + + +
     EHU01849.1 209 CFARDG----HASVLAHPElrqrAVAVSSFGKTFHMTGWKVGYCVAPAAISAEIRKIHQYLTFsvNTPAQLAIADMLRQHPE---HYRELPDFYRA 297
                    **9665....444444444445589**************************************999*************997...9********** PP

                    HHHHHHHHHHHSTEEEECCSCSSEEEEEETHH...CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 284 rrkelrdeLaelglkvlasqsgmflltdlsae...takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                    rr++l ++L +  + +l+ ++++fll d+sa    ++ ++++ L+ evgv+ +p + f       + +R+++ +  e++l+ ++e+l
     EHU01849.1 298 RRDRLIQALSRSRFRILPCEGTYFLLADYSAIsalDDVQFCQWLTREVGVAAIPLSVFCEapfpHKLIRLCF-AKQEATLDAAAERL 383
                    *********999******************999999999***************9999889**989******.************97 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.3e-09   1.5e-05      51     173 ..      70     202 ..      43     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.3e-09
                      -HHHHHHHHHHHHHHT-....SEEEEESSH.HHHHHHHHHTTS-TTEEEEEES...TSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLegg....eaalavssG.maAiaaailallkaGdeivvsd...dlYggtqrllkkvlkklgievkfvdtsdleelekaike 136
                       p r+++ ++ aaL++     ++ + v++G + A+ aai+al++ Gde+++ d   d Y ++ +l   vlk+l ++   + + d  ++ + +++
       EHU01849.1  70 QPLREAIADKTAALYDYrpdvNSDITVTAGaTEALYAAITALVRPGDEVICFDpsyDSYAPAVQLAGGVLKRLTLQPPTFAV-DWPAFSALLSD 162
                      566777777777776543333344444555156999***************87222556678899999********999988.6678******* PP

                      TEEEEEEESS-TTTT--...--HHHHHHHHHHTT-EEEEE CS
  Cys_Met_Meta_PP 137 ntklvylEtptnpllkv...vDiekiaklakkagvlvvvD 173
                      +t+lv l tp np  +v   +D +++ +++ ++++ v+ D
       EHU01849.1 163 KTRLVILNTPHNPSASVwhqADYAALWQAIADREIYVLSD 202
                      *************999833346666666666666777666 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.2e-07    0.0014      61     150 ..      91     174 ..      56     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.2e-07
                  GGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBET.TSCBEGGGHHHH--TTEEEEEEESBET CS
  Aminotran_5  61 eeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkviplde.egeldldelekllnektklvaithvsn 150
                  +++i +t G+tea+ +++ +l   ++pgde++  +  + +   p+++la   g  +k ++l++ +  +d+ ++ +ll++kt+lv+++   n
   EHU01849.1  91 NSDITVTAGATEALYAAITAL---VRPGDEVICFDPSYDSYA-PAVQLA---GGVLKRLTLQPpTFAVDWPAFSALLSDKTRLVILNTPHN 174
                  5799*****************...9*****************.*****9...88899999986256799***************9987655 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.2e-06     0.032      42     116 ..      94     168 ..      81     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.2e-06
                      EEES.SHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEE CS
  DegT_DnrJ_EryC1  42 iavs.sGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIl 116
                      i+v+  +t+Al  a++al v pgdeVI    ++ + a av+ +g +   +  +p t+ +d  a  a++  +t+ ++
       EHU01849.1  94 ITVTaGATEALYAAITAL-VRPGDEVICFDPSYDSYAPAVQLAGGVLKRLTLQPPTFAVDWPAFSALLSDKTRLVI 168
                      55540569********98.899**************************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2776.28
//
Query:       EHU01850.1  [L=204]
Description: methylthioribulose-1-phosphate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-41  140.3   0.0    7.2e-41  140.2   0.0    1.0  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0     4e-45   7.2e-41       2     184 ..       9     194 ..       8     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 4e-45
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaav 99 
                  +l++a+++++++g++ +tgGn+Svr + ++  l   sg+d++ lt +d++ vd+ + +++    +g++ps+et+lH+ iy+ +p+a+av+HtH+ + +
   EHU01850.1   9 QLVAACHWIGAKGWAPATGGNMSVRQD-AHFCLLSESGKDKGSLTRDDFIQVDIATSQAP----SGRRPSAETALHTLIYRLFPEAGAVLHTHTVNST 101
                  79***********************66.55555*********************977888....4579****************************** PP

                  HHHTCCSTSCHCCSSHHHHC.HSS.......SEEEEES-SSTTCHHHHHHHHHHHHH..S-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHH CS
  Aldolase_II 100 alsalagkeglppltqeaaklllg.......devpvipyaapgteelgealaealke..dakavllrnHGlltvGetleeAvalaetleeaaei 184
                  +ls + ++  l  + +e++k l g         +pv+++++ +  +l+ ++++  ++   + + llr+HGl+++G++++eA +++e le+++e+
   EHU01850.1 102 VLSRVEQGAALLLYGYEMQKSLSGqsthedtVAIPVFDNRQ-DVAALASEIEDYAARfpLRYGFLLRGHGLTCWGNDVAEARRHLEGLEFLFEC 194
                  ***99988888889999999777789998666677777777.65566555555554266668*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1521.35
//
Query:       EHU01851.1  [L=227]
Description: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-05   22.8   0.0    0.00036   20.9   0.0    1.8  1  Hydrolase  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.35   10.9   0.0    1.7  1  HAD_2      Haloacid dehalogenase-like hydrolase
       0.15   12.0   0.0       0.28   11.1   0.0    1.4  1  SecB       Preprotein translocase subunit SecB


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     6e-08   0.00036       1     210 []       2     196 ..       2     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6e-08
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH.HHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletg.sehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgr 98 
                 ik++v D+ GT  + + ++  ++++a    +a l+    +h  + a++ a +a++ +  +  +      +      ++  +      +++ ++  ++ +
  EHU01851.1   2 IKAIVTDIEGTTSDIRFVHNVLFPYA----RAHLADYvRQHQAQPAVQDALNAVRTEAGQPDA-----DVDSVIAILFSYM-----DEDRKSTGLKALQ 86 
                 89************************....666666558888888888888887444433333.....3333333444444.....3334444445666 PP

                 HHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES..STTTSHHHHHHHHHHHTSTGGGEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  99 tvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet..vakpspegkvaaireLqgkpeevam 195
                   ++ ++ + + ft +    ++p++  a+ +++a+gi++++ ++++ + ++ +    ++  + + ++++ +t   ak +   ++ ++ + + +  + ++
  EHU01851.1  87 GMIWREGYLSGRFTGH----LYPDVLPALTAWHAQGIKLYIYSSGSVAAQKLLFGYSDEGDITGLFSGYFDThvGAKREVTSYQNIAAQTGLPAGQLLF 181
                 6777777999999987....*************************9977775555555666666666666666788889999***********99**** PP

                 EESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase 196 VGDgvnDaaalaaAg 210
                   D    + a+++Ag
  EHU01851.1 182 LSDIHQELDAARQAG 196
                 ***********9998 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.9e-05      0.35      79     176 ..     102     200 ..      88     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.9e-05
       HAD_2  79 kpydgvkelLeeLkeagyklgivTsksreaveekleqlg...iesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagik 174
                 ++y++v  +L   +++g+kl i +s+s +a++  +   +   i+ +F+  +  ++v+  K + ++++++  +++l + + ++  D ++ + aa++ag +
  EHU01851.1 102 HLYPDVLPALTAWHAQGIKLYIYSSGSVAAQKLLFGYSDegdITGLFSG-YFDTHVGA-KREVTSYQNIAAQTGLPAGQLLFLSDIHQELDAARQAGWH 198
                 5899**********************99999876654441115555543.33333333.458999********************************98 PP

       HAD_2 175 vi 176
                 ++
  EHU01851.1 199 TL 200
                 86 PP

>> SecB  Preprotein translocase subunit SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.6e-05      0.28     102     125 ..      21      44 ..      15      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.6e-05
        SecB 102 rilFPyaReivsdlvreggfppll 125
                 ++lFPyaR+ ++d vr+   +p +
  EHU01851.1  21 NVLFPYARAHLADYVRQHQAQPAV 44 
                 89*************998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1616.89
//
Query:       EHU01852.1  [L=180]
Description: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-38  132.0   0.0    2.4e-38  131.8   0.0    1.0  1  ARD           ARD/ARD' family
    4.7e-06   26.2   0.0    7.8e-06   25.5   0.0    1.3  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.047   13.6   0.1      0.072   13.0   0.1    1.2  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0     4e-42   2.4e-38       3     157 .]       5     165 ..       3     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 4e-42
         ARD   3 yimddseegderlphhtspkekaeelelaklgvlrwkldaddeeeaeeeekilktkeeekkdi........dvevlkestpnfdeklekFfeEhlhede 93 
                 +i+ ds    + l h t+p+ + e l+++ ++++rw++d d  e+ ++e  i+++++ +++ +        dv+++++ +p++de+++kF++Eh+h ++
  EHU01852.1   5 TIFSDSDP-SQPLWHSTDPEAIRERLNAKDVRFERWQADRDLGENPDAETVINAYQHAIDRLVaekgyqswDVISMRADNPQKDELRQKFLSEHTHGED 102
                 68888886.88899************************************************************************************* PP

         ARD  94 eirliveGtgyFdvrskdeawirvlvekGDLivlPagiyhrFtltednkvkalRlFvekekwva 157
                 e+r++veG+g+F ++  +e   ++l+ek DLi++Pag+ h+F++++++++ a+R+F ++e+w+a
  EHU01852.1 103 EVRFFVEGAGLFCLHLDGEI-LQILCEKNDLISVPAGTPHWFDMGSSPHFTAIRIFDNQEGWIA 165
                 **************986665.66***************************************86 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.3e-09   7.8e-06      13      58 ..      96     144 ..      89     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.3e-09
                 EECSSSEEEEEEEEESEEEEE..ECTE..EEEEETTEEEEE-TT-EEEEE CS
     Cupin_2  13 shrHpgedeffyVleGegelt..vdge..eveleaGdsvyfpagtpHrfr 58 
                 +h+H +  e+++ +eG g +   +dge  ++  e+ d++ +pagtpH+f 
  EHU01852.1  96 EHTHGED-EVRFFVEGAGLFClhLDGEilQILCEKNDLISVPAGTPHWFD 144
                 6777776.*********77665599***********************95 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.2e-05     0.072      14      61 ..      91     143 ..      85     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                   -SE.EEETT-SEEEEEEEEE-EEE..EETTEE..EEE-TT-EEEE-TTS-EEE CS
  AraC_binding  14 hsf.pphvhdeyvihyvteGtgrl..rlngrt..ydlgpGdlfLlppgepHdy 61 
                   + f ++h+h+e ++  ++eG+g +  +l+g+     ++++dl+ +p g+pH +
    EHU01852.1  91 QKFlSEHTHGEDEVRFFVEGAGLFclHLDGEIlqILCEKNDLISVPAGTPHWF 143
                   45559*******************9999999887899**************55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1396.05
//
Query:       EHU01853.1  [L=340]
Description: methylthioribose-1-phosphate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-71  238.9   0.0    7.3e-71  238.6   0.0    1.0  1  IF-2B     Initiation factor 2 subunit family
  ------ inclusion threshold ------
        0.2   11.7   1.9       0.35   10.9   1.9    1.3  1  ADIP      Afadin- and alpha -actinin-Binding


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.6   0.0   8.2e-75   7.3e-71       2     282 .]      48     329 ..      47     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 238.6 bits;  conditional E-value: 8.2e-75
                 S-SHHHHHHHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       IF-2B   2 vrGspaiaiaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakksliekikelikeieeadekigdi 100
                 vrG+p i+++a+ +l+  +++ +       +e+l +++d+L++arPtav+l n ++r+++            e+ +sl+e++ +l++e+++ +  i+d+
  EHU01853.1  48 VRGAPLIGLSASLLLALLAEQGE------SREQLAQSLDTLRAARPTAVNLMNNLDRMKQ-------ALAQPEMATSLMEEALRLVHEDKQLCDRIADA 133
                 8999*****99999999998887......478****************************.......456788999*********************** PP

                 HHTTC-TTEEEEEES--SH........HHHHHHHHHHTTEEEEEEEEEXTTTTHH.HTHHHHHHHTTXEEEEEEGGGHHHHHHC.TESEEEEEXSEEET CS
       IF-2B 101 aaelikdgdtilTicnskt........vlevlraaakekkkfkVivvEsrPrlqG.rltakeLvqagipvtlitdsavayvmse.evdkvivGAdrile 189
                 ++ l+k g  +lT+cn++         +l+v+  a++++   +V+v E+rP lqG rlta+eL + g+p  litds++a +m   +vd+v vGAdri++
  EHU01853.1 134 GSALVKPGSQLLTHCNTGGlatagvgtALGVIARAHQQGHVHNVWVDETRPLLQGgRLTAWELGELGVPYQLITDSMAASLMAAgKVDAVWVGADRIAA 232
                 ******************999****************************************************************************** PP

                 TSEEEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETT....EESSTTTEEEEEBSEEEEEGGGXSEEEETTEEEXC CS
       IF-2B 190 nGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellnitg....eriaeeelkvvnpafDvtPpelItliITevGvlpp 282
                 nG++ankiGT+slAvlA+ + ip++v+a+ ++++++ ++++ i ie r++ e++ ++g    ++ a+++ +v npafDvtP+ lI++ + + Gv++p
  EHU01853.1 233 NGDVANKIGTYSLAVLAHYHGIPFYVAAPHTTLDRQCPTGDAIPIEQRAASEVTGVSGsfgsVQWAPADAQVSNPAFDVTPAALISGWVLDTGVITP 329
                 *****************************************************987652222677888***************************98 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.9   3.9e-05      0.35      41      98 ..      61     118 ..      57     131 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.9e-05
        ADIP  41 iysLlqardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqaker 98 
                 + +Ll+ + + +eq  ++ +t+r  + +  +l+++ +r+k+ l+q e+ ++l ++++r
  EHU01853.1  61 LLALLAEQGESREQLAQSLDTLRAARPTAVNLMNNLDRMKQALAQPEMATSLMEEALR 118
                 5689************************************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2518.34
//
Query:       EHU01854.1  [L=399]
Description: 5-methylthioribose kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.6   0.4    1.5e-09   38.1   0.4    1.3  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.4   8.5e-14   1.5e-09       2     209 ..      31     263 ..      30     305 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 8.5e-14
                 EEEE--.SSCEEEEEEETT-..-EEEEE.......E-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS......H CS
         APH   2 vrelsggasnrtylvttpag..ryvlrr.......npparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr......k 85 
                 ++e+++g+ n+++++ +++g  r v+++       + +  ++ ++ r   + + L ++ +++P+       ++++ l + ++e +  + ++r      +
  EHU01854.1  31 AEEIGDGNLNQVFKIYDDQGnsRIVVKQalpyvrcVGE-SWPLTLDRARIEAQTLVEHYKYCPQHTV-NVTHYDADLAVMIMEDLSSHRIWRselvkgA 127
                 5799***************7789998884444333444.5999***************999998655.4455666669****************99998 PP

                 HHHHHHHHHHHHHHHHHCCHHCH.............-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S..SS-EEEE CS
         APH  86 lsaaqlpellealgeflaalhqv............dpaalpladflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpg..elptvll 169
                  +++  ++l+e l+++l++ +++            +  +  l+ ++++  +++++ +  ++ ++ ++ +    ++ +e+++ a+a l ++  + ++ ll
  EHU01854.1 128 YYPEAPRQLGEYLAQTLFHTSDFilhphvkkaevaRFINPELCEITEDLFFNDPYTDHVRNSYPEALEPLvASLRTDEALRIAVAGLKHRffSHAEALL 226
                 88999999999999999977777433333332222123555667777777777888777666666666666555666655555555555599******* PP

                 -SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH CS
         APH 170 HgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll 209
                 HgD+h+g + v   dg +   iD e+   gp+ +D++++l
  EHU01854.1 227 HGDIHSGSIFVA--DGSL-KAIDAEFGYFGPMGFDVGTAL 263
                 ************..6666.379***************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2891.41
//
Query:       EHU01855.1  [L=815]
Description: medium-long-chain fatty acyl-CoA dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.6e-115  384.9   0.8   3.5e-115  384.5   0.8    1.2  1  DUF1974        Domain of unknown function (DUF1974)
    7.2e-17   62.1   0.1    2.5e-16   60.3   0.0    2.0  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.6e-14   53.7   0.7    8.3e-14   52.1   0.7    1.9  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
      4e-09   36.6   0.0    7.6e-09   35.7   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> DUF1974  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.5   0.8  7.8e-119  3.5e-115       1     284 []     514     792 ..     514     792 .. 0.99

  Alignments for each domain:
  == domain 1  score: 384.5 bits;  conditional E-value: 7.8e-119
     DUF1974   1 iRCHPYvlkemeaaqsedkekalkaFdkalfghigfvvsnalrslvlgltggrlasapvagetkryyrqlnrlSaafAllaDlallvLGGeLKrkerls 99 
                 iRCHPYvl+em+aa+s+d    ++ Fdkalf+hig+v sna+rsl+lgl ggr+++ap++++t+ryy++lnr+Sa++All+D++++vLGG+LKr+er+s
  EHU01855.1 514 IRCHPYVLQEMAAAASND----VAGFDKALFSHIGHVGSNAMRSLWLGLLGGRTSAAPTRDATRRYYQHLNRISANLALLSDVSMAVLGGSLKRRERMS 608
                 8*****************....9**************************************************************************** PP

     DUF1974 100 aRlgDvlSqLYlasavLkrfedegrqeedlplvhwalqdalaqaeealdellaNfpnrvvalllrllvfplgrrakkpsDklkhevaelllepseardr 198
                 aRlgDvlSqLYlasa+Lkr+edegr+e+dlplvhw +qdal++ae+a+d+ll+Nfpnr+va+++rl+vf+ g+++ +psD+l+h++a++l+ ps++r r
  EHU01855.1 609 ARLGDVLSQLYLASATLKRYEDEGRHEADLPLVHWGVQDALHKAEKAMDDLLSNFPNRLVAGVMRLVVFAGGQHCPAPSDRLDHKLAKMLQVPSATRTR 707
                 *************************************************************************************************** PP

     DUF1974 199 LtagvylpedeedplgrlekafkavlaaeplekklkkaikkgklkklkleelleealekgviteeeaelleeaeelrldviqVDdF 284
                 L +g+yl  +e++p g+le+a+++v+aae ++++l+k +kk+ l++++l++l+++ale+g i+++eae l++aee rl++i+VD+F
  EHU01855.1 708 LGRGQYLAPSEHNPAGQLEQALQDVMAAEVIHDRLCKQQKKH-LSFTRLDALAKQALEQGWIDQKEAEVLKRAEESRLRSINVDEF 792
                 **************************************9966.******************************************9 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   5.5e-20   2.5e-16      27     113 .]     146     233 ..     121     233 .. 0.85
   2 ?   -2.9   0.0       2.4   1.1e+04      66     106 ..     519     556 ..     510     558 .. 0.65

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 5.5e-20
                    HHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTH.HHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  27 deegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslva.pailrfGteeqkrryLpklasge 113
                    +e + +p elw  l+++ ++++ +++eygG+++++ ++a v+++la ++  la+++gv +sl+  + + ++Gte+qk++yLp+la+g+
     EHU01855.1 146 HELADMPPELWAHLKAHRFFAMIIKKEYGGLEFSAYAQARVLQKLAGVSGILAITVGVPNSLGPgELLQHYGTEKQKDHYLPRLARGD 233
                    34456999*******************************************************559********************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
                    HHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHHHHHHH CS
  Acyl-CoA_dh_N  66 ivaeelaradaglalllgvhsslvapailrfGteeqkrryL 106
                     v++e+a+a +    + g   +l +  i + G+ + +  +L
     EHU01855.1 519 YVLQEMAAAASN-D-VAGFDKALFS-HIGHVGSNAMRSLWL 556
                    567777765443.2.3555555664.699999999998887 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.7   1.8e-17   8.3e-14       1     145 [.     360     507 ..     360     509 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1.8e-17
                    TBHHHHHTTTT--S-.----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheR.lavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfa 95 
                    g+G+r   e l ++R +++   + g ++++   + +ya+ r++f+  +++ + + e la++a ++ ++ +++  ++ ++ +g+++ + ++++K+ +
     EHU01855.1 360 GQGWRMLVECLSVGRgITLPSNSTGSLKSVALATGAYAHIRRQFKLSIGKMEGIEEPLARIAGNAYVMDAAATLITTGIMQGEKPAVLSAIVKYHC 455
                    79*************44566899************************************************************************* PP

                    HHHHHHHHHHHHHHHGGGTTS.GGGH.HHHHHHHTHHHHHSSS-HHHHHHHH CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyl.eeyp.verlyrdarvlrigeGtseiqrnii 145
                    ++ aq+ + +am++ Gg+G++  +   ++r+y+ a +    eG++   r++i
     EHU01855.1 456 THRAQQSIIDAMDIAGGKGIMlGDSNfLARAYQGAPIAITVEGANILTRSMI 507
                    ********************9555558****************997777766 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.7e-12   7.6e-09       1      79 [.     237     328 ..     237     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.7e-12
                    EEE---SS-SS-GGG--....-EEEEETT.E.....EEEEEEEEEEETTTT-SEEEEEEE.......TS-------EEEEEEE..GGGEEE---- CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvk....ttaaerdgge.....yvlnGeKiwitnaaiatlalvlar.......tekpdrarglslflvprdapgvsvrrie 79 
                    +falT p+aGsd+ ++      ++ e +  +     ++l+++K++it a+iat++ + ++        +++  + g++++l+p+++pgv++++ +
     EHU01855.1 237 CFALTSPEAGSDAGAIPdtgvVCMGEWQ--GqqvlgMRLTWNKRYITLAPIATVLGLAFKlsdpdhlLGDK-DELGITCALIPTSTPGVEIGHRH 328
                    9**************9943332223333..245899************************86666544444.499****************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5894.36
//
Query:       EHU01856.1  [L=192]
Description: D-sedoheptulose 7-phosphate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-32  110.5   0.1    8.1e-32  110.1   0.1    1.2  1  SIS_2           SIS domain
    6.3e-09   35.8   0.0    1.3e-08   34.8   0.0    1.5  1  SIS             SIS domain
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.14   12.0   0.0    1.3  1  Antibiotic_NAT  Aminoglycoside 3-N-acetyltransferase


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.1   1.4e-35   8.1e-32       7     138 .]      14     146 ..      10     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 1.4e-35
                 HHHHHHHHHH..SHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT-.. CS
       SIS_2   7 teilerivet..qaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrl.. 101
                 +e+l+++ +   + + i++aa ++ads ++ggkvl +G+G+S+ +a+++a ++ g++  +r++ pa+a ++    ++ s++++d gy++ ++r v++  
  EHU01856.1  14 AETLNNFLNDdaNIHIIQRAAVMLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDV---SHLSCVSNDFGYDHVFSRYVEAvg 109
                 55555554441145679****************************************************665...799***************988777 PP

                 -TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 102 kpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 +pgDvLl iS+sGn+a++++a+eaa+++gmkvi lt+
  EHU01856.1 110 RPGDVLLGISTSGNSANIIKAVEAARAQGMKVITLTG 146
                 ***********************************97 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.1e-12   1.3e-08      52     105 ..     110     163 ..      85     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 2.1e-12
                 STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE CS
         SIS  52 deddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyin 105
                 +++d+++ is+sg++++ ++a+e a+++g+k+i++T+++g  +a +ad+ ++++
  EHU01856.1 110 RPGDVLLGISTSGNSANIIKAVEAARAQGMKVITLTGKDGGKMAGSADIEIRVP 163
                 799********************************************9998875 PP

>> Antibiotic_NAT  Aminoglycoside 3-N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.14     116     154 ..      38      74 ..      23     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
                     HHHHHSTEEEEEEB--GGG-TTHHHHTTSS..S---EEE CS
  Antibiotic_NAT 116 grlyelggkvLllGvglernTalHlaEeradvpnkrlde 154
                     +   ++ggkvL  G g + + a+H aEe+ +  +++ ++
      EHU01856.1  38 ADSFKAGGKVLSCGNGGSHCDAMHFAEELTGR-YRE-NR 74 
                     556789***********************994.222.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1462.68
//
Query:       EHU01857.1  [L=257]
Description: putative amidotransfease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-113  378.4   0.0   1.7e-113  378.1   0.0    1.0  1  GATase_4  Glutamine amidotransferases class-II
    8.1e-05   22.8   0.0    0.00014   22.1   0.0    1.3  1  GATase_6  Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.1   0.0  1.9e-117  1.7e-113       1     253 [.       1     253 [.       1     256 [. 0.99

  Alignments for each domain:
  == domain 1  score: 378.1 bits;  conditional E-value: 1.9e-117
    GATase_4   1 mceLLgmssnvptdisfsftgfaarggltdahadGwGiafyegkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvRelw 99 
                 mceLLgms+nvptdi+fsftg+ +rgg t++h+dGwGi+fye+k++r+fkdp ps +sp+a+lv+eypiks+ vvaHiR+a++G v+lenthpF+Relw
  EHU01857.1   1 MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEDKGCRTFKDPLPSFNSPIARLVQEYPIKSHSVVAHIRQANRGPVSLENTHPFTRELW 99 
                 9************************************************************************************************** PP

    GATase_4 100 grewifAHnGdlkeykpklegrfePvGsTDsElafCelleelasrfekaepsaeeleralaelakeiaelGvfnlllsdgralfahastrLvyilRkaP 198
                 gr+w++AHnG+lk+y++  +g+f+PvG+TDsE afC++l++la+r++ ++ +  +++r + ela+e+ ++Gvfn+llsdgr+l+a++st+L +i+R+aP
  EHU01857.1 100 GRNWTYAHNGQLKGYRQLETGTFRPVGETDSEKAFCWILHKLATRYPRTPGNWPAVFRYIGELASELRQKGVFNMLLSDGRYLMAFCSTNLFWITRRAP 198
                 *************************************************************************************************** PP

    GATase_4 199 fgeaelkdedlevdfeevttkedrvavvatepLtrdetWkklepGellvfrdGal 253
                 fg+a+l d+d+e+df+++t ++d v+v+at+pLt +etW+++ pGe+ +f  G+ 
  EHU01857.1 199 FGRAQLLDQDVEIDFQKHTGANDVVTVIATQPLTGNETWHRIVPGEWALFYLGER 253
                 *************************************************998875 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-08   0.00014      10      75 ..      69     131 ..      59     155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.6e-08
    GATase_6  10 vedevalaHvRlaivglaeeega.qPf..psedgrlllvhNGeiynykelreelpalkglafrsrsDte 75 
                 ++++ ++aH R a +g   + ++ +Pf      ++++++hNG+ + y++    l+   + +  +++D+e
  EHU01857.1  69 IKSHSVVAHIRQANRGPV-SLENtHPFtrELWGRNWTYAHNGQLKGYRQ----LET-GTFRPVGETDSE 131
                 567899***********8.66666***63334566************74....444.444445566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1996.56
//
Query:       EHU01858.1  [L=246]
Description: putative L,D-transpeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-06   28.2   0.2    4.5e-06   27.1   0.1    1.5  2  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   2.5e-10   4.5e-06       3     140 ..      45     160 ..      43     171 .. 0.78
   2 ?   -0.5   0.0     0.084   1.5e+03      47      92 ..     158     205 ..     156     217 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.5e-10
                 EEEEETTTTEEEEEEETTEEEEEEE.......-BEB....TTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCC CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfp.......vsvG....gkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkv 90 
                 yi + ++e r+l+ly + ++ ++          s G    +++egd++ P+G + +k  + +p++++++ i ++ + + +r                  
  EHU01858.1  45 YIQIFKEE-RTLELYGKIGNEYRLLdtyricnFS-GglgpKRREGDFKSPEGFYSVKLNQLKPDSRFYRAINIGFPNQYDR------------------ 123
                 77888888.7778877666555544454565433.3577*9999***************************8877766555.................. PP

                 CEEE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHT CS
        YkuD  91 kfvfpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlv 140
                   + ++g+   iH            g++ S GC +++++ + +++ +v  
  EHU01858.1 124 -DQGYSGNYLMIH------------GDCKSIGCYAMTNAYMDQIFTYVNA 160
                 .4578999*****............2588*****************9985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.084
                 ECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT..CECCCCE CS
        YkuD  47 ikskvrnptwnvppsiarkeiypklrkdpeyldkknskv..algkvkf 92 
                 ++++ rn +++v+  i+ +++ + + ++  y+ ++ +      g+v+f
  EHU01858.1 158 VNAALRNGQQEVNIAIYPFRMTDSNMQRHRYSAYADFWKqlQPGYVYF 205
                 666777777777777777777777777777766554433444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1764.15
//
Query:       EHU01859.1  [L=351]
Description: DNA polymerase IV [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-49  166.2   0.0    7.6e-49  165.6   0.0    1.3  1  IMS              impB/mucB/samB family
    4.9e-08   33.7   0.1    9.7e-08   32.7   0.1    1.5  1  IMS_C            impB/mucB/samB family C-terminal domain
    1.9e-05   24.7   0.0    5.2e-05   23.3   0.0    1.8  1  IMS_HHH          IMS family HHH motif
     0.0035   17.5   0.0     0.0075   16.5   0.0    1.5  1  Cdd1             Pathogenicity locus
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.032   14.0   0.0    1.6  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
      0.035   14.7   0.0      0.073   13.7   0.0    1.6  1  HHH_5            Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   0.0   2.5e-52   7.6e-49       1     150 []       7     154 ..       7     154 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 2.5e-52
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 +Dmd+F+a+ve+++dp+L++ P+++++ +++rg++ +++y+Ar+yGv+++m+   a+klcp+l +++ +++ y++as++i +i++r+ + ++e++s+DE
  EHU01859.1   7 VDMDCFFAAVEMRDDPSLRDIPMAIGGSRDRRGVISTANYPARKYGVRSAMPTGMALKLCPHLRLLPGRYDVYKEASSQIRAIFSRY-TSLIEPLSLDE 104
                 7**************************************************************************************.66********* PP

                 EEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS 100 ayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                 ayld+t+ ++ ++s  + +a+ +r++i+ e++lt+s+Gia+ k+lAK+as+
  EHU01859.1 105 AYLDVTDSQHCQGSA-TLIAQDIRATIFRETQLTASAGIAPIKFLAKIASD 154
                 *************96.*********************************96 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   3.3e-11   9.7e-08       5     108 ..     237     340 ..     234     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.3e-11
       IMS_C   5 rpepksissektfpepydesk.lkkelreLaeelarrL...rdkglvartitlklrysdfhasrsatLpr.ptsdtreileaalkLlrrlidepglpir 98 
                 ++e+ks+++e+t++ ++d  + + +++  L +el rrL   r ++       +kl++sdf+ + +    + p  + +++++ a+k +++     g+++r
  EHU01859.1 237 ERERKSLGVERTLADDIDSWErCLEIIDYLYAELDRRLtqiRPDK-HIARQGVKLKFSDFQQTTQEH--VwPVLNKEDMIAVARKTWDERRA--GRGVR 330
                 689***********96664447999999**********6654444.44455789999***9777774..4378**************88887..***** PP

       IMS_C  99 ligvsasnlv 108
                 l+g++++ ++
  EHU01859.1 331 LVGLHVTLVD 340
                 ******9876 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.7e-08   5.2e-05       5      32 .]     170     197 ..     166     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.7e-08
     IMS_HHH   5 kefLwplpitkipGiGgklgekLeklGi 32 
                 ++fL  lp+ kipG+G++ ++kLe lG+
  EHU01859.1 170 SDFLLALPLAKIPGVGKVSAKKLEELGL 197
                 578889********************96 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.5e-06    0.0075       8      44 ..     178     214 ..     174     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.5e-06
        Cdd1   8 lqdiPniGkalaedlvelGirsveelkgedpeelyek 44 
                 l +iP++Gk  a++l elG+++++++++ d + l ++
  EHU01859.1 178 LAKIPGVGKVSAKKLEELGLHTCADVQKADLALLLKR 214
                 789***********************99987766665 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05     0.032       3      30 ..     178     205 ..     177     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
  DNA_pol_lambd_f   3 FtkvyGVGpktAkkwyakGirtledlra 30 
                      + k+ GVG + Akk+ + G+ t  d+++
       EHU01859.1 178 LAKIPGVGKVSAKKLEELGLHTCADVQK 205
                      679***********************99 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.5e-05     0.073       4      39 ..     178     213 ..     175     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                 HHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHT CS
       HHH_5   4 LlsvsGiGpktAlallsaGiesvedlaaadveeLak 39 
                 L +++G+G++ A++l + G  + +d+ +ad + L k
  EHU01859.1 178 LAKIPGVGKVSAKKLEELGLHTCADVQKADLALLLK 213
                 889**************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2550.13
//
Query:       EHU01860.1  [L=355]
Description: hypothetical protein CKS_0312 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-28  100.3   5.2    1.7e-28   99.9   5.2    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
      4e-07   30.5   0.0    2.3e-05   24.8   0.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    5.5e-07   29.3   0.1    8.1e-07   28.7   0.1    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    0.00055   19.3   0.0    0.00092   18.6   0.0    1.3  1  YcaO          YcaO cyclodehydratase, ATP-ad Mg2+-binding


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   5.2   3.8e-32   1.7e-28      11     257 ..      50     298 ..      40     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 3.8e-32
                   CHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHH CS
  Peripla_BP_4  11 pffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaa 107
                   +  +++  g+ ++ ++lg++v   + +++d+a+ ++++++ i++++dgi+++   ++ +++ +k++++aGI+V +fd+++ +  +++ + ++d    
    EHU01860.1  50 DNTTQFVAGAIQQGRQLGFKVST-FLSNGDDARFQDFVNQGISQKYDGIVLSHGKAPYASALVKRIADAGIKVSVFDTPVDNPIPGVTVTAQDDASL 145
                   44567889999********9998.79*****************************************************999999999999999999 PP

                   HHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECC..EEESTTTCHHHHHHHHHHHHHTTT...ECEEEESSCCHHHCHH CS
  Peripla_BP_4 108 GelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikiva..evaganwdaekaqqalealltanp...ldgilaandgmaegal 199
                   ++l   +l +  +gk +++v l  ++g p  e r    +k lke pgi  ++   ++ + + + ++ +++ a+l+++p   +d+i++a+d+  +ga 
    EHU01860.1 146 AQLSLGQLIKDFNGK-ANIVKL-WVAGFPPMERRQVVYEKLLKENPGIHQLEsiGAVST-DVQGDTANKVGAILAKYPkgkIDAIWGAWDAFSQGAY 239
                   999999999999999.****99.999999999999999******999999995543454.55555556699****775578**************** PP

                   HHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSE..EEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 200 ealeaaglagkvvvtgqDatpealeaikdGtid..atvaqdpyelgyaavelavallkGk 257
                   +al+++g++ ++ ++ +D++++ l+++++       tva dp+ +g++ ++l+++ ++G+
    EHU01860.1 240 KALQENGRTEIK-LYSIDVSNQDLQLMRQKGSPwvQTVAVDPKTIGAVNMRLVANKIAGE 298
                   *******99887.**************888888667******************999997 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.017        75      11     100 ..      39     121 ..      34     153 .. 0.82
   2 !   24.8   0.0   5.2e-09   2.3e-05      25     151 ..     173     302 ..     163     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
                   EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEE..SSCCHHHHHHHHHCCTT--T CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAvia..asDelAlgvlqalreaglrv 100
                   ria+i+  +   + + ++  +g+ q  ++lg+++ +++ ++dd+  ++ +++   + q++      ++++        A ++++++++ag++v
    EHU01860.1  39 RIAVIR--NLGSDDNTTQFVAGAIQQGRQLGFKVSTFLSNGDDARFQDFVNQG--IsQKY------DGIVLshGKAPYASALVKRIADAGIKV 121
                   899999..6777788899999*********************99999999985..43555......677775445566777778888888875 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 5.2e-09
                   HHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.......HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS..--..S CS
  Peripla_BP_3  25 asderergfrqal.eelglplnetvvaaddpaaaaaaraal.ll.qal.klaalPtAviaasDelAlgvlqalreaglrvPedlsvigfd..ds..e 113
                    +++r+  +++ l e  g+ + e ++a  ++  +++ +++   +  ++ k+++  +A++ a+D+  +g+++al+e g     +++++++d  ++   
    EHU01860.1 173 PMERRQVVYEKLLkENPGIHQLESIGAVSTDV-QGDTANKVgAIlAKYpKGKI--DAIWGAWDAFSQGAYKALQENGR---TEIKLYSIDvsNQdlQ 263
                   56667777777775555666666655555444.44444433222355566666..8**********************...6******994433445 PP

                   CC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S- CS
  Peripla_BP_3 114 la.alssPplTtvrqpleelGraaaellldllegekapp 151
                   l+ +  sP++ tv+++++++G   ++l++  ++ge +p+
    EHU01860.1 264 LMrQKGSPWVQTVAVDPKTIGAVNMRLVANKIAGETTPA 302
                   6689999*************************9998886 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   1.8e-10   8.1e-07      19     209 ..      55     252 ..      44     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.8e-10
                   HHHHHHHHHHHHTEEE.EEEE-SSHHHHHHHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHH.T-EEEEESS--B-T.TTS-EEEE-HHHHHHHHHH CS
  Peripla_BP_1  19 lvkgitkaakehgvdv.lllaageeedlakaidllkakgidgliia.tsdtsfdditakaes.gipvialedaidap.dgvPcvipddtqageestq 111
                    v+g+ + ++++g++v + l  g+++  +  +++  +++ dg+++  + ++  +++++  +  gi+v   +  +d+p  gv +   dd   ++ s  
    EHU01860.1  55 FVAGAIQQGRQLGFKVsTFLSNGDDARFQDFVNQGISQKYDGIVLShGKAPYASALVKRIADaGIKVSVFDTPVDNPiPGVTVTAQDDASLAQLSLG 151
                   67889999******984678888888999*****************9**********999999**************878888899*******9999 PP

                   HHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHT.T-GGGEEEEE-SSSSHH.HHHHHHHHHHTT-TT..-SEEE-SSHHHHHHHHHHHHHTT CS
  Peripla_BP_1 112 kLiaeghkrp.iallegpesaltakervqGflaalaea.Glevkdvhvalgsndie.daaealnelleshPe..idaivaindeaalGavlalkkeG 203
                   +Li+   ++  i+ l+    +   ++ v  ++  l+e  G   +   +  +s d++ d a+ + ++l + P   idai +  d    Ga+ al+ +G
    EHU01860.1 152 QLIKDFNGKAnIVKLWVAGFPPMERRQV-VYEKLLKENpGI-HQLESIGAVSTDVQgDTANKVGAILAKYPKgkIDAIWGAWDAFSQGAYKALQENG 246
                   ****988888887777777776554444.499999876377.667778777777552789**********863377********************* PP

                   .--GGG CS
  Peripla_BP_1 204 rlkike 209
                   r +ik 
    EHU01860.1 247 RTEIKL 252
                   *99886 PP

>> YcaO  YcaO cyclodehydratase, ATP-ad Mg2+-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.1e-07   0.00092     156     198 ..      99     143 ..      81     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.1e-07
        YcaO 156 la..sdpeirellerlreagievrlldatldlgipvvaavlvdpk 198
                 l+  + p++ +l++r+++agi+v ++d++ d +ip v++++ d+ 
  EHU01860.1  99 LShgKAPYASALVKRIADAGIKVSVFDTPVDNPIPGVTVTAQDDA 143
                 443356***********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2509.95
//
Query:       EHU01861.1  [L=333]
Description: permease component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-39  135.7  42.1    2.5e-39  135.1  42.1    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1  42.1   1.4e-43   2.5e-39       1     268 []      51     325 ..      51     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 1.4e-43
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   +i+n+l+++ai++ +A+G++++   +G+++l++g+ + l+  ++  l + ++    +a+++ l+++ +vgl++++l+++l+++ +++tl++l+v++g
    EHU01861.1  51 NIINILRSIAIVTVIAVGVSVSL-TVGGFDLSVGSTASLANALVISLFVWYGFDTTAAIAITLALCTLVGLFNAFLIVVLRIPDMLATLATLFVIQG 146
                   699********************.****************776666666666669****************************************** PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsaviv...llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAg 191
                   ++ ++ +g++  ++ +    ++++ +   ++ l +++    +++l++++++ l l  t+ Gr+++a+g+n+eaar++Gi+++r+++l++vi+++lAg
    EHU01861.1 147 VAMTYSFGGSITENMVLPSGDMAEGTIPAAFNLLGQVPtivIIMLVVTVVAQLALSLTKHGRRMYALGGNPEAARLSGIRTTRYRVLAYVIASLLAG 243
                   ****99999988888888888887766666666665556779999999************************************************* PP

  BPD_transp_2 192 laGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   l G+lla ++gs+++n+g g+ ++a+aa+ +G         ++lgt++Ga+i+gv+++ +l +l++p    +++ g++l l+l
    EHU01861.1 244 LGGILLASRIGSSQVNAGSGYLMDAVAAAWIGFSlagsgkPNALGTLVGAVILGVLQN-GLVMLSVPYYAMDIIKGLVLALAL 325
                   ********************************9999999999****************.*******999999*****999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2374.28
//
Query:       EHU01862.1  [L=501]
Description: ATP-binding component of an ABC superfamily ribose transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-44  150.0   0.0    2.1e-22   80.1   0.0    2.4  2  ABC_tran         ABC transporter
    7.9e-12   45.6   1.6     0.0015   18.4   0.0    3.6  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    3.2e-07   30.3   0.2    0.00096   18.9   0.0    3.1  4  AAA_30           AAA domain
    3.9e-06   26.4   0.2       0.65    9.4   0.0    3.3  3  SMC_N            RecF/RecN/SMC N terminal domain
    6.6e-06   25.8   0.4     0.0002   21.0   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain
    8.9e-06   26.3   0.1        0.1   13.2   0.0    2.9  2  AAA_18           AAA domain
    4.1e-05   23.9   2.0       0.41   10.9   1.0    3.4  2  AAA_22           AAA domain
    6.2e-05   22.8   0.7        5.2    6.8   0.1    4.1  4  IstB_IS21        IstB-like ATP binding protein
    8.1e-05   23.2   0.2    0.00081   20.0   0.0    2.2  2  AAA_23           AAA domain
    8.3e-05   22.5   0.1        0.1   12.5   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    0.00015   22.2   1.0       0.24   11.7   0.2    2.5  2  AAA_16           AAA ATPase domain
    0.00062   19.6   0.0      0.024   14.4   0.0    3.0  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0013   18.3   0.1     0.0035   17.0   0.1    1.6  1  AAA_27           AAA domain
     0.0014   18.7   0.4        2.2    8.4   0.0    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0038   16.8   0.1       0.06   12.9   0.0    2.4  2  AAA_25           AAA domain
     0.0059   16.7   0.0        2.7    8.1   0.0    3.0  3  AAA_14           AAA domain
      0.007   16.6   0.1       0.83    9.9   0.0    3.2  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0089   16.2   0.2        3.4    7.8   0.1    2.9  2  AAA_33           AAA domain
      0.009   15.3   0.2        1.7    7.9   0.0    2.5  2  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.017   15.4   1.5       0.35   11.1   0.1    2.8  3  AAA_28           AAA domain
       0.02   13.9   0.4          3    6.7   0.1    2.4  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.024   15.0   0.0        0.9   10.0   0.0    2.9  3  AAA              ATPase family associated with various cellul
      0.028   14.4   0.6        3.4    7.7   0.1    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.03   14.1   0.2      0.057   13.2   0.2    1.4  1  MukB             MukB N-terminal
       0.04   13.1   0.1        4.5    6.4   0.0    2.5  2  NB-ARC           NB-ARC domain
      0.068   12.8   1.0        7.9    6.0   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.13   12.2   1.0          2    8.3   0.1    2.5  2  APS_kinase       Adenylylsulphate kinase
       0.13   12.0   0.1         16    5.3   0.0    2.6  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.14   12.0   0.0        1.8    8.4   0.0    2.2  2  Rad17            Rad17 P-loop domain
       0.29   10.7   0.6        5.1    6.7   0.0    2.4  2  SRP54            SRP54-type protein, GTPase domain
       0.36   10.7   3.0        4.2    7.3   0.0    2.9  3  NACHT            NACHT domain
       0.54   10.0   1.8        7.3    6.3   0.1    2.2  2  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   3.8e-25   2.1e-22       3     137 .]      24     173 ..      22     173 .. 0.94
   2 !   67.6   0.0   2.8e-21   1.6e-18       1     136 [.     273     427 ..     273     428 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 3.8e-25
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS..--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxx................xxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe..pqlfpeltvren................esd 82 
                  v++  +  +++a++G nGaGKStL+++l+g ++   Geilldg++++   ++   +  i  ++qe    l p+l+v+en                +++
  EHU01862.1  24 SVDFLTEGHSVHALTGANGAGKSTLMAVLSGAHSHYHGEILLDGQPVSIrSPRDAKKLGIHLVQQEvdVALVPQLSVAENilldqlaepghgfrwgDMR 122
                 566667777899************************************9778888888999999999999**************************9** PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++ ++l++l+ + + +++v    +  S  +kq + laral  + ++l+lDEpta
  EHU01862.1 123 RQARDLLAQLDATIDVKRPV----ERCSLAEKQQILLARALSHHCRFLILDEPTA 173
                 **************999999....*****************************97 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 2.8e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx.............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren.............. 79 
                 l+++sl l++ge+++i G  GaGK+ L+k+l g +k   t Ge+   gk +k   ++ s++++++ +p+e   + +f + +v+ n              
  EHU01862.1 273 LRDISLRLHKGEILGIAGLAGAGKTELCKALFGASKSrvTRGEL--HGKRWKPrSPHDSVSQRMALVPEErrkEGIFIDESVAMNlsisaddsfsrwsl 369
                 689******************************99986677777..7888887779999**********9666666666666666*******9999999 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     ++ +++e+++++l+      t   +  + LSgG +q+va+ + l +++++l++DEpt
  EHU01862.1 370 fghrQAWRWAEAVIRRLNVRT---TGPAQPLRRLSGGNQQKVAIGKWLRNNADVLIFDEPT 427
                 998888888999999999766...3333344*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-05    0.0068       2      24 ..      35      57 ..      34      85 .. 0.83
   2 !    6.9   0.6    0.0083       4.6     258     297 ..     161     202 ..     141     207 .. 0.87
   3 ?   -0.1   0.0       1.2   6.6e+02       4      63 ..     288     359 ..     285     379 .. 0.64
   4 !   18.4   0.0   2.8e-06    0.0015     219     294 ..     365     454 ..     327     456 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l+G+Ng+GKS+L+  l+++++
  EHU01862.1 35 HALTGANGAGKSTLMAVLSGAHS 57
                68****************99864 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0083
      AAA_21 258 g..sllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                    ++l++DEp + L+ +  +rl+ ++++l++ g+ vi+ +H
  EHU01862.1 161 HhcRFLILDEPTAPLDQHESERLFAVVRRLQTSGIGVIFISH 202
                 24589************************************* PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.2
      AAA_21   4 liGpNgsGKSnLLdaldllarl............drdvegltdelsggggirkipslldlydpeipfefeie 63 
                 + G  g+GK+ L +al +++               + + ++  ++++   + + +++  ++d++ +++++i+
  EHU01862.1 288 IAGLAGAGKTELCKALFGASKSrvtrgelhgkrwKPRSPHDSVSQRMALVPEERRKEGIFIDESVAMNLSIS 359
                 667779**********88877666666666666555555555555555555555555555555555555555 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 2.8e-06
      AAA_21 219 r.................gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                 +                   ++++++ g   p+r lS G ++  a+  +l   +   ++l++DEp  g + k+ ++l++l+++l+ +g  +i 
  EHU01862.1 365 SrwslfghrqawrwaeavIRRLNVRTTGPAQPLRRLSGGNQQKVAIGKWLRNNA---DVLIFDEPTKGVDVKAKTELFTLISNLAHEGKGIIY 454
                 245555666777777777888999999************************999...9***********************777766766665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-06   0.00096      12      49 ..      26      63 ..      22      93 .. 0.89
   2 ?   -2.0   0.0       4.3   2.4e+03      86     114 ..     159     189 ..     107     200 .. 0.67
   3 !    7.3   0.0    0.0061       3.4      19      41 ..     284     306 ..     276     357 .. 0.86
   4 ?   -1.5   0.0       3.2   1.8e+03      65     108 ..     389     438 ..     369     448 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-06
      AAA_30 12 alltsgdrvavltGpAGtGKttalkalreaweaaggrv 49
                 +lt+g+ v++ltG+ G+GK+t++++l  a+ +  g++
  EHU01862.1 26 DFLTEGHSVHALTGANGAGKSTLMAVLSGAHSHYHGEI 63
                57999*************************99986555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.3
      AAA_30  86 lepg.tllivDE.agmvdtkqlaallkaaek 114
                 l+++ + li DE ++ +d+++ ++l++ +++
  EHU01862.1 159 LSHHcRFLILDEpTAPLDQHESERLFAVVRR 189
                 3444477888883344677777777766665 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0061
      AAA_30  19 rvavltGpAGtGKttalkalrea 41 
                  +  + G AG+GKt + kal  a
  EHU01862.1 284 EILGIAGLAGAGKTELCKALFGA 306
                 477899**********9998655 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.2
      AAA_30  65 elgieastiakllkrlk.....grarlepgtllivDEagm.vdtkqlaal 108
                  +  +a+ + +l   ++     g++  +++++li DE    vd k  ++l
  EHU01862.1 389 RTTGPAQPLRRLSGGNQqkvaiGKWLRNNADVLIFDEPTKgVDVKAKTEL 438
                 44445555555555555777775455666699999996542455555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0013      0.73      24      43 ..      32      51 ..      12      58 .. 0.79
   2 !    9.4   0.0    0.0012      0.65     152     204 ..     156     209 ..     149     221 .. 0.79
   3 ?    3.9   0.0     0.054        30      26      55 ..     285     311 ..     273     363 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0013
                SSEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldA 43
                +s+ a++G+NG+GKs l+  
  EHU01862.1 32 HSVHALTGANGAGKSTLMAV 51
                56899***********9975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0012
                 HHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 152 AiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlek 204
                 A    +   + +lDe  a LD+++ +++  ++++ +++   +i is+r + l+ 
  EHU01862.1 156 ARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQTSgIGVIFISHRIHELKA 209
                 55555556699**********************877666999****99776665 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.054
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakk 55 
                 +  i G  G+GK+ l+ A+   +G ++++ 
  EHU01862.1 285 ILGIAGLAGAGKTELCKAL---FGASKSRV 311
                 56799*************9...67666654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.6e-07    0.0002       7      46 ..      14      52 ..       9      59 .. 0.84
   2 ?    2.3   0.0      0.26   1.4e+02      12      39 ..     273     300 ..     266     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.6e-07
      AAA_29  7 vNWgtfdg.htieidlkg..atlltGpsGsGKSTllDAiqalL 46
                ++ g f   +++++ ++g  ++ ltG++G+GKSTl+    a+L
  EHU01862.1 14 IDFGGFAAlTSVDFLTEGhsVHALTGANGAGKSTLM----AVL 52
                677899999999999999999**************9....444 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.26
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTll 39 
                 +++ +++++  ++  ++G  G+GK+ l 
  EHU01862.1 273 LRDISLRLHKGEILGIAGLAGAGKTELC 300
                 555567777555888*********9775 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1    0.0015      0.82       3      44 ..      37      76 ..      36     169 .. 0.78
   2 !   13.2   0.0   0.00018       0.1       2      21 ..     287     309 ..     286     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0015
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                ltG+ G+GK+tl   Ls  +  +  +++++ +++++  + p 
  EHU01862.1 37 LTGANGAGKSTLMAVLSGAH--SHYHGEILLDGQPVSIRSPR 76
                9***************9988..66666666665555544444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00018
      AAA_18   2 lltGtpGvGKttlakeL...skr 21 
                 +++G +G+GKt+l+k+L   sk+
  EHU01862.1 287 GIAGLAGAGKTELCKALfgaSKS 309
                 599**************775333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.0   0.00074      0.41       5     128 ..      32     200 ..      29     207 .. 0.62
   2 !    8.5   0.0    0.0042       2.4       6      29 ..     284     307 ..     279     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00074
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.....................................erpevv....fvtlpsstsskdllrellr 62 
                 +++ ++tG  G+GK+tl++ l   +  +++ e                                      ++   +    + ++ ++  + d++r+   
  EHU01862.1  32 HSVHALTGANGAGKSTLMAVLSGAH-SHYHGEIlldgqpvsirsprdakklgihlvqqevdvalvpqlsvAEN--IlldqLAEPGHGFRWGDMRRQARD 127
                 567789************9888876.45444447777777777777777766666666666666655533222..233544444444444444333333 PP

      AAA_22  63 alglelka......erlsseell.ealeqalrarav...ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLv 128
                  l                 e++  +  +q l ara     ++li+DE    l+  + e l  ++++l   ++g+ +i++
  EHU01862.1 128 LLA----QldatidVKRPVERCSlAEKQQILLARALshhCRFLILDEPTApLDqhESERLFAVVRRLQ--TSGIGVIFI 200
                 333....0223455355556665577788887777788889999999888887543555555566666..788888877 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0042
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                  il + G +G+GKT l++ l+   
  EHU01862.1 284 EILGIAGLAGAGKTELCKALFGAS 307
                 677799************998765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0092       5.2      35      67 ..      19      52 ..       7      62 .. 0.81
   2 ?    6.6   0.0     0.011         6     100     136 ..     156     189 ..     136     205 .. 0.75
   3 ?    1.6   0.1      0.35     2e+02      46      67 ..     282     303 ..     272     313 .. 0.84
   4 ?    2.5   0.0      0.19   1.1e+02     108     147 ..     417     455 ..     381     464 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0092
   IstB_IS21 35 vkeLatlsfiekkeni.vllGpsGvGKshlaial 67
                +++L + +f+++ +++ +l+G  G+GKs l + l
  EHU01862.1 19 FAALTSVDFLTEGHSVhALTGANGAGKSTLMAVL 52
                678999***988766548**********997766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
   IstB_IS21 100 aralkrllkvdllilDdlgllpldqaeaellfeviek 136
                 aral+   +++ lilD+  + pldq+e+e lf v+ +
  EHU01862.1 156 ARALS--HHCRFLILDEP-TAPLDQHESERLFAVVRR 189
                 33333..45689****96.68*************975 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.35
   IstB_IS21  46 kkenivllGpsGvGKshlaial 67 
                 k e + + G +G+GK+ l  al
  EHU01862.1 282 KGEILGIAGLAGAGKTELCKAL 303
                 56777899**********9997 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.19
   IstB_IS21 108 kvdllilDdlgllpldqaeaellfeviekryerrsiiits 147
                 ++d+li D+  ++ +d +++++lf +i++       ii +
  EHU01862.1 417 NADVLIFDEP-TKGVDVKAKTELFTLISNLAHEGKGIIYA 455
                 4599999996.6889999*********9876555555544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.4e-06   0.00081       7      40 ..      16      53 ..       7      62 .. 0.86
   2 ?    0.6   0.0       1.2   6.8e+02      20      40 ..     284     304 ..     271     318 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.4e-06
      AAA_23  7 frsfrdqe.idF...skgltlItGpNGaGKTTildAik 40
                f+ f   + +dF   ++ + ++tG NGaGK+T++  + 
  EHU01862.1 16 FGGFAALTsVDFlteGHSVHALTGANGAGKSTLMAVLS 53
                788866555999**999****************98765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.2
      AAA_23  20 gltlItGpNGaGKTTildAik 40 
                  +  I G  GaGKT +  A+ 
  EHU01862.1 284 EILGIAGLAGAGKTELCKALF 304
                 467799********8888875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00018       0.1      91     129 ..      23      62 ..       2      68 .. 0.77
   2 !    7.5   0.0    0.0063       3.6      87     128 ..     270     312 ..     255     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                  +++  l ++ ++ +l G  G+GKStL+ +l + ++   ge
   EHU01862.1  23 TSVDFLTEGhSVHALTGANGAGKSTLMAVLSGAHSHYHGE 62 
                  55555666668899****************9987666555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0063
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++ l++++ +l++ ++  ++G  G+GK+ L +al +  + ++ 
   EHU01862.1 270 EHLLRDISLRLHKgEILGIAGLAGAGKTELCKALFGASKSRVT 312
                  556677887887779999****************998877764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   0.00043      0.24      28     143 ..      36     170 ..      23     200 .. 0.54
   2 !    8.6   0.0    0.0041       2.3      18      51 ..     279     310 ..     268     342 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00043
      AAA_16  28 llsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala................. 106
                  l+G+ G GKs+l+  l   +  +  g i+l g+ ++      +s+  a+ l   +l++q+ d a   +l+ +   l+++la                 
  EHU01862.1  36 ALTGANGAGKSTLMAVLSG-AHSHyhGEILLDGQPVSI-----RSPrDAKKL-GIHLVQQEVDVALVPQLSVAENILLDQLAepghgfrwgdmrrqard 127
                 69************88874.333323345566666666.....233344444.3355555555555555555555555555555555555555555444 PP

      AAA_16 107 .......avpelagaeasrllellkrllallsrderplvlvlDd 143
                         ++  ++ e+ +l+e+ + lla++ + ++   l+lD+
  EHU01862.1 128 llaqldaTIDVKRPVERCSLAEKQQILLARALS-HHCRFLILDE 170
                 444666644444444446666665555544444.3446666665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0041
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd 51 
                 r+++  +e++ + G +G GK+ l ++l+ a + +
  EHU01862.1 279 RLHK--GEILGIAGLAGAGKTELCKALFGASKSR 310
                 4444..48999****************9544443 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.46   2.6e+02       4      18 ..      38      52 ..      35     107 .. 0.75
   2 ?   -1.9   0.0         4   2.3e+03      60      72 ..     160     172 ..     146     177 .. 0.76
   3 !   14.4   0.0   4.3e-05     0.024       3      96 ..     288     372 ..     286     374 .. 0.70
   4 ?   -2.6   0.0       6.4   3.6e+03      62      74 ..     417     429 ..     403     434 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.46
  Viral_helicase1  4 hGvpGcGKStlirkl 18
                      G+ G+GKStl   l
       EHU01862.1 38 TGANGAGKSTLMAVL 52
                     6999******87554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4
  Viral_helicase1  60 stkgkililDEyl 72 
                      s ++++lilDE +
       EHU01862.1 160 SHHCRFLILDEPT 172
                      3469******965 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 4.3e-05
  Viral_helicase1   3 vhGvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvks.tkgkililDEylllhaGyilllaalskaklvilf 94 
                      ++G +G+GK+ l++ l+  s    +v r      +++kp++p++sv+  +    alv++  +++ +++DE  +++    l + a+++ +   lf
       EHU01862.1 288 IAGLAGAGKTELCKALFGASkS--RVTRG-ELHGKRWKPRSPHDSVSQRM----ALVPEeRRKEGIFIDESVAMN----LSISADDSFSRWSLF 370
                      78***************99322..22222.33456777898888888444....444444569*******99887....456777777777777 PP

  Viral_helicase1  95 GD 96 
                      G 
       EHU01862.1 371 GH 372
                      75 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.4
  Viral_helicase1  62 kgkililDEylll 74 
                      ++++li+DE +++
       EHU01862.1 417 NADVLIFDEPTKG 429
                      4789*****8875 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   6.2e-06    0.0035      10      46 ..      15      52 ..       2      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.2e-06
      AAA_27 10 ryGkftd.rsldfsaeeadlhliyGpNEAGKstalrAi 46
                 +G f+  +s+df +e +++h + G+N AGKst+++ +
  EHU01862.1 15 DFGGFAAlTSVDFLTEGHSVHALTGANGAGKSTLMAVL 52
                5888876369***********************99765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0038       2.2       3      24 ..      36      57 ..      34      64 .. 0.86
   2 !    8.0   0.1    0.0052       2.9       3      27 ..     287     312 ..     285     319 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0038
                EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltgeka 24
                a+ G   +GKStL+  l+g+++
  EHU01862.1 36 ALTGANGAGKSTLMAVLSGAHS 57
                789**************99754 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0052
                 EEEESTTSSHHHHHHHHHTS.TEEES CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivs 27 
                 +i+G   +GK+ L +al+g+ k++v+
  EHU01862.1 287 GIAGLAGAGKTELCKALFGAsKSRVT 312
                 89*****************8788886 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00011      0.06      18      58 ..      21      57 ..       3      94 .. 0.75
   2 ?    1.1   0.0      0.46   2.6e+02      30      50 ..     280     300 ..     268     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_25 18 pppprrwlvkgllpagelallaGapgtGKttlaldlalava 58
                ++++++ l +g+    ++++l+Ga g+GK+tl   l+ a +
  EHU01862.1 21 ALTSVDFLTEGH----SVHALTGANGAGKSTLMAVLSGAHS 57
                666666666666....79**************998876655 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.46
      AAA_25  30 lpagelallaGapgtGKttla 50 
                 l +ge+  +aG  g+GKt l+
  EHU01862.1 280 LHKGEILGIAGLAGAGKTELC 300
                 678999999*********987 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.043        24       4      22 ..      34      52 ..      32      80 .. 0.84
   2 !    8.1   0.0    0.0047       2.7       2      73 ..     283     351 ..     282     386 .. 0.80
   3 ?   -2.1   0.0       6.6   3.7e+03      64      90 ..     417     449 ..     402     460 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.043
      AAA_14  4 ilvitGaRrvGKTtllkql 22
                + ++tGa  +GK+tl+  l
  EHU01862.1 34 VHALTGANGAGKSTLMAVL 52
                6689***********9866 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0047
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilekl.keekktylflDEi 73 
                 ++il i G+  +GKT l+k l+  +    +++   +l  +r k ++ p++  +  ++++ +e++k+ +f+DE 
  EHU01862.1 283 GEILGIAGLAGAGKTELCKALFGASK---SRVTRGELHGKRWKPRS-PHDSVSQRMALVpEERRKEGIFIDES 351
                 57999*****************8877...99999999999997655.544444444443133688889***96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 6.6
      AAA_14  64 kktylflDEiqev......pewekalkslvdeg 90 
                 +  +l++DE  +       +e+++ + +l  eg
  EHU01862.1 417 NADVLIFDEPTKGvdvkakTELFTLISNLAHEG 449
                 667888888665434444445555555555554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015      0.83      60      89 ..     159     188 ..     136     189 .. 0.85
   2 ?    2.6   0.1      0.29   1.7e+02      62      87 ..     416     441 ..     377     444 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
     SbcCD_C  60 repalrlvfLDEAFsklDeesiatllelle 89 
                  ++++r+++LDE  + lD++ +++l+++++
  EHU01862.1 159 LSHHCRFLILDEPTAPLDQHESERLFAVVR 188
                 4689********************998876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.29
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllel 87 
                 ++ +++++DE  +++D +  ++l+ l
  EHU01862.1 416 NNADVLIFDEPTKGVDVKAKTELFTL 441
                 34567777888777777777777766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0061       3.4       3      25 ..      36      61 ..      34     206 .. 0.57
   2 ?    5.3   0.0     0.035        20       5      23 ..     289     307 ..     285     391 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0061
      AAA_33  3 llvGlpGsGKstlaerllkklg...a 25
                 l G++G+GKstl   l  ++    +
  EHU01862.1 36 ALTGANGAGKSTLMAVLSGAHShyhG 61
                678**********9988766655452 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.035
      AAA_33   5 vGlpGsGKstlaerllkkl 23 
                  Gl+G+GK+ l + l  + 
  EHU01862.1 289 AGLAGAGKTELCKALFGAS 307
                 7***********9998554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0031       1.7      21      50 ..      37      66 ..      32      76 .. 0.85
   2 ?    4.9   0.0     0.025        14      19      39 ..     286     306 ..     270     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0031
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvvrld 50
                l G+ GAGKs+l++ l  ++ ++ + + ld
  EHU01862.1 37 LTGANGAGKSTLMAVLSGAHSHYHGEILLD 66
                88**************99999877777776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.025
  Zeta_toxin  19 illgGqpGAGKselaellkde 39 
                 + ++G  GAGK+el ++l  +
  EHU01862.1 286 LGIAGLAGAGKTELCKALFGA 306
                 5589**********9987655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00063      0.35       3      22 ..      36      55 ..      34      67 .. 0.80
   2 ?   -1.7   0.0       5.2   2.9e+03      16      59 ..     106     153 ..     104     176 .. 0.52
   3 ?    2.2   0.0      0.35     2e+02       5      21 ..     289     305 ..     287     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00063
      AAA_28  3 vitGgestGKTtlleaLaar 22
                ++tG+ ++GK+tl++ L+  
  EHU01862.1 36 ALTGANGAGKSTLMAVLSGA 55
                79*************99943 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.2
      AAA_28  16 leaLaa..rgypvv..pEaareileeklakgedalpwvedllafaerv 59 
                 l +La+  +g+++   ++ ar++l ++ a+   + p +++ la ++++
  EHU01862.1 106 LDQLAEpgHGFRWGdmRRQARDLLAQLDATIDVKRPVERCSLAEKQQI 153
                 566675224666655577777777777766665555433333222222 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.35
      AAA_28   5 tGgestGKTtlleaLaa 21 
                  G  ++GKT l++aL  
  EHU01862.1 289 AGLAGAGKTELCKALFG 305
                 56779*********973 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.02        11      32      49 ..      35      52 ..      23      62 .. 0.85
   2 ?    6.7   0.1    0.0054         3      16      50 ..     270     304 ..     259     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.02
                EEEEE-TTSSHHHHHHHH CS
        MeaB 32 vGltGvPGaGkstlveal 49
                  ltG  GaGkstl+  l
  EHU01862.1 35 HALTGANGAGKSTLMAVL 52
                469***********9766 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0054
                 HHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  16 kellerllakaGraqvvGltGvPGaGkstlvealg 50 
                 ++ll+ ++ +  + + +G+ G+ GaGk  l +al 
  EHU01862.1 270 EHLLRDISLRLHKGEILGIAGLAGAGKTELCKALF 304
                 68999***********************9999875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.65   3.6e+02       3      20 ..      37      54 ..      35     135 .. 0.84
   2 ?   -1.9   0.0       7.6   4.3e+03      93     114 ..     187     206 ..     150     243 .. 0.62
   3 ?   10.0   0.0    0.0016       0.9       4      71 ..     289     355 ..     286     366 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.65
                EESSTTSSHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavak 20
                l+G  G GK++l+  +  
  EHU01862.1 37 LTGANGAGKSTLMAVLSG 54
                899********9987765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 7.6
                 HHHTTTSSSTEEEEEEESSGGG CS
         AAA  93 ldgvkkkeskvivigatnrpdk 114
                 + ++++  s + vi +++r+++
  EHU01862.1 187 VRRLQT--SGIGVIFISHRIHE 206
                 333333..22344444444433 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0016
                 ESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS...STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHH CS
         AAA   4 yGppGtGKTllakavakelgvefleisgsellsk...yvgesekkirelfkeakekakpsilfiDEidala 71 
                  G  G GKT l+ka+   +++++ + +++  + k        +++++ + +e ++      +fiDE  a++
  EHU01862.1 289 AGLAGAGKTELCKALFGASKSRVTRGELHGKRWKprsPHDSVSQRMALVPEERRK----EGIFIDESVAMN 355
                 7899**************9988866555555522122334444444444444444....459999976665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.046        26      19      40 ..      32      53 ..      14      63 .. 0.79
   2 ?    7.7   0.1    0.0061       3.4       7      42 ..     273     306 ..     267     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.046
                TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgla 40
                ++v +L+G  GaGK+tl+  l 
  EHU01862.1 32 HSVHALTGANGAGKSTLMAVLS 53
                45789************97665 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0061
                 HHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE   7 tealgkklakalgdvilLeGdLGaGKTtlvrglaka 42 
                 ++++  +l k  g+++ + G  GaGKT l+++l  a
  EHU01862.1 273 LRDISLRLHK--GEILGIAGLAGAGKTELCKALFGA 306
                 5555556655..889999*************99765 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2    0.0001     0.057      26      46 ..      32      52 ..      11      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
                HHHHHHHS--SHHHHHHHHHH CS
        MukB 26 elvttlsGgnGaGksttmaaf 46
                + v +l G+nGaGkst ma +
  EHU01862.1 32 HSVHALTGANGAGKSTLMAVL 52
                4699**************976 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.043        24      22      39 ..      34      51 ..      25      62 .. 0.77
   2 ?    6.4   0.0    0.0081       4.5      21      43 ..     284     306 ..     270     333 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.043
                EEEEEESTTSSHHHHHHH CS
      NB-ARC 22 vvalvGmgGvGKttlakq 39
                v al G  G GK+tl++ 
  EHU01862.1 34 VHALTGANGAGKSTLMAV 51
                5589***********985 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0081
                 EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnk 43 
                  ++++ G +G GKt l k  +  
  EHU01862.1 284 EILGIAGLAGAGKTELCKALFGA 306
                 489*************9998865 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.014       7.9       2      21 ..      34      53 ..      33      68 .. 0.81
   2 ?    5.2   0.1     0.026        15       3      21 ..     286     304 ..     284     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.014
                EEEEEESTTCCHHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhll 21
                v  ltG  G+GK+tL+  l 
  EHU01862.1 34 VHALTGANGAGKSTLMAVLS 53
                6789***********98765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.026
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++++G  G+GKT L ++l 
  EHU01862.1 286 LGIAGLAGAGKTELCKALF 304
                 7899**********99887 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0036         2       6      42 ..      36      71 ..      31     160 .. 0.77
   2 ?    2.1   0.1      0.28   1.6e+02       2      22 ..     283     303 ..     282     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0036
                EEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHT CS
  APS_kinase  6 wltGlsgsGKstianalekkLvekgisvylLdGdnvR 42
                 ltG  g+GKst+   l+   +++ +  +lLdG+ v 
  EHU01862.1 36 ALTGANGAGKSTLMAVLSG-AHSHYHGEILLDGQPVS 71
                59***********988875.56666777899999764 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.28
                 -EEEEEESSTTSSHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianal 22 
                 g ++ ++Gl+g+GK+ + +al
  EHU01862.1 283 GEILGIAGLAGAGKTELCKAL 303
                 5677799********999887 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.028        16       6      30 ..      37      61 ..      34      93 .. 0.86
   2 ?   -2.6   0.0       7.5   4.2e+03     104     126 ..     179     201 ..     175     209 .. 0.78
   3 ?    3.6   0.1      0.09        50       7      23 ..     289     305 ..     284     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.028
   PduV-EutP  6 liGkvgsGKttLtqalkgeelkYkk 30
                l G+ g+GK tL+  l+g + +Y+ 
  EHU01862.1 37 LTGANGAGKSTLMAVLSGAHSHYHG 61
                6899****************99986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.5
   PduV-EutP 104 deenieaveelLksaGaekifev 126
                 ++e++ av ++L++ G+  if  
  EHU01862.1 179 ESERLFAVVRRLQTSGIGVIFIS 201
                 67888889999999999999965 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.09
   PduV-EutP   7 iGkvgsGKttLtqalkg 23 
                  G  g+GKt L++al g
  EHU01862.1 289 AGLAGAGKTELCKALFG 305
                 5889**********966 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0032       1.8      40      87 ..      28      77 ..      20     109 .. 0.72
   2 ?    0.9   0.0      0.68   3.8e+02      37      65 ..     275     303 ..     267     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0032
       Rad17 40 LesrkkriLLisGPsGCgkstvvkvLskelgiklrewl...npvslkepdn 87
                L +  + +  ++G  G gkst + vLs  ++    e l    pvs+++p  
  EHU01862.1 28 LTEG-HSVHALTGANGAGKSTLMAVLSGAHSHYHGEILldgQPVSIRSPRD 77
                5544.778899****************999887666543336888888865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.68
       Rad17  37 advLesrkkriLLisGPsGCgkstvvkvL 65 
                   +L  +k +iL i+G +G gk+   k L
  EHU01862.1 275 DISLRLHKGEILGIAGLAGAGKTELCKAL 303
                 5567777788*************998887 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0091       5.1       2      27 ..      33      58 ..      32      67 .. 0.80
   2 ?    1.7   0.1       0.3   1.7e+02       6      21 ..     288     303 ..     284     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0091
                EEEEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallkk 27
                +v +l G +GaGK t +a L+   ++
  EHU01862.1 33 SVHALTGANGAGKSTLMAVLSGAHSH 58
                57899*************99866655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
                 EEESTTSSHHHHHHHH CS
       SRP54   6 lvGlqGaGKTttlaKL 21 
                 ++Gl GaGKT  +  L
  EHU01862.1 288 IAGLAGAGKTELCKAL 303
                 78********998766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0074       4.2       3      20 ..      35      52 ..      33      62 .. 0.85
   2 ?   -1.6   0.0         4   2.2e+03      66      99 ..     136     177 ..     109     242 .. 0.58
   3 ?    2.7   0.2      0.19     1e+02       5      23 ..     288     306 ..     284     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0074
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                 +l+G++G GK+tL++ l
  EHU01862.1 35 HALTGANGAGKSTLMAVL 52
                5799***********876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4
                 -SSS-CCHHHHCCSCCCEE...........EEEE-STT-SS-TCH CS
       NACHT  66 aapvsevwavllelperlL...........lilDglDelvtdlgq 99 
                 ++  ++v    l+ ++++L           lilD   e  + l+q
  EHU01862.1 136 IDVKRPVERCSLAEKQQILlaralshhcrfLILD---EPTAPLDQ 177
                 4444443333334444444466666666644443...44444444 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.19
                 EEC-TTTCHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklala 23 
                 + G aG GKT L + l  a
  EHU01862.1 288 IAGLAGAGKTELCKALFGA 306
                 889*********9988655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2      0.14        80       2      17 ..      38      53 ..      37      61 .. 0.85
   2 ?    6.3   0.1     0.013       7.3       1      17 [.     288     304 ..     288     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.14
  ATP_bind_1  2 vGpaGsGKttfvgals 17
                +G  G+GK+t++  ls
  EHU01862.1 38 TGANGAGKSTLMAVLS 53
                6999********9887 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 ++G aG+GKt +++al 
  EHU01862.1 288 IAGLAGAGKTELCKALF 304
                 68************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 3304.99
//
Query:       EHU01863.1  [L=323]
Description: threonine dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-80  269.4   0.0    4.4e-80  269.2   0.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.17   12.3   0.0         11    6.4   0.0    2.5  2  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.2   0.0   4.9e-84   4.4e-80       2     294 .]      19     308 ..      18     308 .. 0.98

  Alignments for each domain:
  == domain 1  score: 269.2 bits;  conditional E-value: 4.9e-84
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHT CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrll 100
                 + +i+ TPl+r+++++k++g++l+lK E l+ tg+fK+Rga + +++l  +  a + + +ssGNh+++l++a+++lG+kv++v+p ++++ k++ +r+l
  EHU01863.1  19 AAHIRHTPLLRAEKIEKRVGCELYLKPETLQITGAFKIRGALNKVLSLPVEAFANGMISSSSGNHAQGLSYAGRMLGVKVILVLPVTTPQIKIDNTRAL 117
                 5689*******************************************6666589********************************************* PP

                 T-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGT CS
        PALP 101 GaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdala 199
                 Gaev+++++d  ++ +++ e+a+  +++ +v+ f++p v++g+gtig Eil +l +++d+v+vp+GgGgl++G+a+++ke rp vrvig+ep+  ++++
  EHU01863.1 118 GAEVILFDSDNASRWKKVYEIAEL-NNYAVVHGFEDPMVMAGQGTIGCEILHDL-PDVDTVIVPLGGGGLLSGVATAIKETRPAVRVIGAEPALTPKYY 214
                 *******9988888888*******.*****************************.6******************************************* PP

                 TCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 200 rslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvviltg 294
                 +s+ +++++++p  +tiadgl+ ++p++   ++++++vdeiv v+de + ++mr la+++++++ep++ ++l al l+   +lk+ ++v+v+ltg
  EHU01863.1 215 QSRINKQPTSLPLLNTIADGLRLSVPGRNPYPIIEKYVDEIVLVDDEHITQGMRVLASEAKLIAEPAASIGLGAL-LAGSVSLKPAEKVCVLLTG 308
                 ***************************************************************************.*****************98 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.01        90      37      61 ..      19      53 ..       3     149 .. 0.68
   2 ?    6.4   0.0    0.0013        11       6      46 ..     158     198 ..     154     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.01
                HHHHHT--HHHHHHHHHHH--S--..........E CS
                xxxxxxxxxxxxxxxxxxxxxxxx..........x RF
        FtsA 37 iakalrtaveeAerikikyGsala..........e 61
                +a++ +t++  Ae+i+++ G+ l            
  EHU01863.1 19 AAHIRHTPLLRAEKIEKRVGCELYlkpetlqitgA 53
                6677789999******9999988866554444330 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0013
                 -SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   6 Gagktdvavaedgalvhlrvigvggngitkdiakalrtave 46 
                 G g++ + +++d   v++ ++++gg g+ +++a+a+++   
  EHU01863.1 158 GQGTIGCEILHDLPDVDTVIVPLGGGGLLSGVATAIKETRP 198
                 9999********99999*******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2579.16
//
Query:       EHU01864.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01864.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01864.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01864.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01864.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 733.88
//
Query:       EHU01865.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01865.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 863.05
//
Query:       EHU01866.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.0    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.022   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.038   12.6   6.8       0.06   11.9   6.8    1.3  1  FUSC             Fusaric acid resistance protein family
       0.04   13.5   2.2      0.047   13.2   0.8    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.3   2.5       0.32   10.7   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.15   12.0   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.53   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.3    8.1   7.9        6.7    7.0   7.9    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        7.2    7.3   8.7        7.7    7.2   1.0    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.6      0.12     1e+02     167     214 ..      34      82 ..      21     121 .. 0.50
   2 !  325.1   0.0  4.7e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU01866.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   56777777778888888888863344442...33333333333333333211 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.7e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01866.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01866.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01866.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01866.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01866.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   3.2e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU01866.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01866.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   5.2e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01866.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.18   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01866.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01866.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.8   7.3e-05      0.06     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU01866.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   5.8e-05     0.047     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU01866.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   33444555555555666666677789999999999988886655439999**************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01866.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00012     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU01866.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU01866.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4    0.0004      0.32     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.24   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01866.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU01866.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   2.2e+03      26      54 ..      16      44 ..       9      57 .. 0.78
   2 ?    3.1   0.0      0.11        86      15      53 ..      64     102 ..      57     108 .. 0.80
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01866.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888776655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU01866.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01866.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00031      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00031
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01866.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00073      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00073
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU01866.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01866.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01866.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01866.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01866.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01866.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0021       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0021
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01866.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0075       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU01866.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0083       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0083
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU01866.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0    0.0094       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.31   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0094
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01866.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01866.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 3841.27
//
Query:       EHU01867.1  [L=485]
Description: aminoacyl-histidine dipeptidase (peptidase D) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-20   72.0   0.0    9.9e-20   71.1   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40
    6.4e-07   29.3   0.1    1.7e-06   27.9   0.1    1.7  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.013   15.8   0.1      0.035   14.5   0.1    1.7  1  STAS_2         STAS domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.7e-23   9.9e-20       1     205 [.      72     479 ..      72     481 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.7e-23
                    EEEEES-BSS..TTCG.GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCES CS
                    xxxxxxxxxx..xxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp..eeet.dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvd 92 
                    +l++HlD+Vp  +++t  ++t+ p ++ ++   + +rG++ +    ++++ al+ l+d+ ++  g++++l++  EE+g++Ga  l  g++   ++d
     EHU01867.1  72 ALQAHLDMVPqkNNDTvHDFTKdPIQPYVDGEWVKARGTTLGADNGIGMASALAVLADNSLT-HGPLEVLLTMTEETGMDGAFGLQPGWL---QAD 163
                    689*******987777777999******9977***************************876.69***********98899988888766...333 PP

                    EEEEEEEESSSBTCHSTETEEEE......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxx......................................................................... RF
  Peptidase_M20  93 avfelhieepgileagklaigvv......................................................................... 115
                         +i+ ++  e+g++  g                                                                           
     EHU01867.1 164 I----LIN-TDSEEEGEIYMGCAggidfittlpltreavpagfetlkftlkglrgghsgadihmglgnankllarfltahaaeldlrliaftggtl 254
                    3....233.222232332222225566666667777777777777778888888888888888888899999999999999999999999999999 PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     EHU01867.1 255 rnaipreafatvsvdsskvdnlksaaasflaavqnehgvkekniafvsepvahqdealsresrdrflnllnstpngvirnsdvakgvvetslnvgv 350
                    99999999999999999999999999999999999999999999999************************************************* PP

                    ....................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEE. CS
                    ....................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF
  Peptidase_M20 116 ....................................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarffagi.ptv. 172
                                                         ++ ++ +g++ +  + dsp++++  e++ +lfg++++  v + +g +++ f++  p++ 
     EHU01867.1 351 vtmdadkaeinclirslidtgrdyvvqmltslgqlaGAQTKPKGGYPGWQPDaDSPIMALTCETYVALFGKTPNIQVIH-AGLECGLFKKPyPNMd 445
                    ***********************************76999999***************************999999***.********55569996 PP

                    EE.EESSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 173 mi.fgpgsglaHspnEyvdledlekgikvlarll 205
                    m+ +gp   + Hsp+E+v++e++  + k+l+ ll
     EHU01867.1 446 MVsIGPTITGPHSPDEQVHIESVGLYWKLLTTLL 479
                    6689999899***********9988888887776 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   2.8e-10   1.7e-06       3     104 ..     208     290 ..     206     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.8e-10
                 B-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer   3 hkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeil 101
                 +kGl gg++++++++g ++       A+++lar+l++  +e              l +  + gG+ +n+ip+ea a++++  ++ ++++++ + + +++
  EHU01867.1 208 LKGLRGGHSGADIHMGLGN-------ANKLLARFLTAHAAE------------LDLRLIAFTGGTLRNAIPREAFATVSVDSSKVDNLKSAAASFLAAV 287
                 6888888888888888888.......***************............9*****************************9999999999988888 PP

                 TSC CS
   M20_dimer 102 eke 104
                 ++e
  EHU01867.1 288 QNE 290
                 765 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   5.8e-06     0.035       7      69 ..     242     306 ..     233     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.8e-06
      STAS_2   7 ldldtaaelreqllealaag..aevvvDlsgvervDsaalalLlalartarargrrlvlrglppa 69 
                 ldl+ +a     l+ a+++   a+v vD s v ++ saa+++L+a++++ + +++ + ++  p a
  EHU01867.1 242 LDLRLIAFTGGTLRNAIPREafATVSVDSSKVDNLKSAAASFLAAVQNEHGVKEKNIAFVSEPVA 306
                 55555555566788888555569*************************99999999998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3478.45
//
Query:       EHU01868.1  [L=152]
Description: guanine-xanthine phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-17   62.9   0.0    2.9e-17   62.6   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.6e-21   2.9e-17       5     156 ..      12     143 ..       8     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.6e-21
                   TTT---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSS CS
  Pribosyltran   5 llenpaildavarlaaeileeyngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtG 100
                   l+       ++++la+++l    +++  ++++ rgG+++a+ la+eL+++++  v +++y++d + e++  +     + ++ +g+  +++DD++dtG
    EHU01868.1  12 LQI------HARKLAQRLLPV--EQWKGIIAVSRGGLVPASLLARELGIRYVdTVCISSYDHDHQREMKV-L-----KRAEGDGEGFIVIDDLVDTG 94 
                   444......556666666666..89999**********************77589999**********84.3.....899***************** PP

                   HHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE CS
  Pribosyltran 101 gTllaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfel 156
                   gT +    +++e +p+  r++++++kpa++  vd + + + +   +++++++++++
    EHU01868.1  95 GTAQ----AIREMYPK-ARFCTIFAKPAGRALVDDYIVDIPQ--NTWIEQPWDMGV 143
                   **87....99*****6.****************887776664..56**99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1111.95
//
Query:       EHU01869.1  [L=417]
Description: fermentation/respiration switch protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.3e-178  591.7   0.0     7e-178  591.6   0.0    1.0  1  DUF1100   Alpha/beta hydrolase of unknown function (DUF1100)
  ------ inclusion threshold ------
        0.1   11.2   0.0       0.48    9.1   0.0    2.0  2  AXE1      Acetyl xylan esterase (AXE1)
       0.15   11.6   0.0       0.28   10.7   0.0    1.5  1  DLH       Dienelactone hydrolase family
       0.17   11.1   0.0       0.26   10.5   0.0    1.2  1  LYTB      LytB protein


Domain annotation for each model (and alignments):
>> DUF1100  Alpha/beta hydrolase of unknown function (DUF1100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  591.6   0.0  1.6e-181    7e-178       1     410 [.       1     415 [.       1     416 [. 0.97

  Alignments for each domain:
  == domain 1  score: 591.6 bits;  conditional E-value: 1.6e-181
     DUF1100   1 avsknlsetlfkkkkkaketsalvrrlpt.skelldaldektakawyrnlrrlqwiwrGvdpleieevlariasskaertddelldtvvGyrsGnwiye 98 
                 ++ knls  lfk+++k++ets+lvr  ++ ++e+++ald+++ + wyr+l++l+w+wrGv   ei evlaria+s+ e+t+  lldtv+Gyr+Gnw ye
  EHU01869.1   1 MSGKNLSVELFKPRFKHPETSSLVRLRRHaTHEVHSALDGDSRRGWYRMLNKLMWTWRGVPAQEISEVLARIAISDVEHTNPALLDTVIGYRNGNWNYE 99 
                 5679********************96655166******************************************************************* PP

     DUF1100  99 waklgmlhqkkaaeekde...eaaeellaaallysiagyphlkgdnlalqaqvlanrayeeaakklkyvlkqlelpvek.kkitgflhlpk.tdkplpv 192
                 w +++  +q++a + k++   +a++ +l+a+ lys+a+yp++kgd+la qaq+la rayeea+++l+  lk l++ +e+ ++++gflh+p   ++p+p+
  EHU01869.1 100 WSRQAGRWQQRALDAKEDahdQAGHDWLHASHLYSVAAYPYIKGDELADQAQALASRAYEEATRRLPGELKTLTFHIEGgSPVSGFLHMPPgVEAPYPT 198
                 ************98776545589*******************************************************9899*******995799**** PP

     DUF1100 193 vlvsaGldslqtdmyrlfrdylakkdiamltidlpsvGasskwkltedssllhqavlkeladvpyvdhtrvgliGfrfGanvavrlaflesekvkavva 291
                 v+ ++ ldslqtd yrlf+dyla+++iamlt+d+psvG + kwkl++d+s+lhq+vl++la+vp++dhtrv+++GfrfGanvavrla+le ++++av++
  EHU01869.1 199 VMFCGALDSLQTDHYRLFHDYLAPRGIAMLTLDMPSVGNAIKWKLSQDTSFLHQQVLRDLASVPWIDHTRVAALGFRFGANVAVRLAYLEAPRLRAVAC 297
                 *************************************************************************************************** PP

     DUF1100 292 lGavvhdlltsskklqkvpkmyldvlasrlGksdvdieslsgelnayslkvqGllsgrrtktpilalslegdpvspkednklvalfsadGklkkisskt 390
                 lG++vh+llt+   ++kvp+my+d+lasrlG++ +++++l++el +yslk qGll grrt tp+l+ ++ +d +sp+e++kl+a++sa+Gk++ i+ k+
  EHU01869.1 298 LGPIVHSLLTQNTLQNKVPDMYMDMLASRLGMAGSTDSALRAELLSYSLKNQGLL-GRRTATPMLSAYWSNDLFSPEEESKLIASSSAQGKALLIPVKP 395
                 *******************************************************.******************************************* PP

     DUF1100 391 itkgyeksldlaiewledel 410
                 ++ +++ +l+++ +wl ++l
  EHU01869.1 396 VAASFDSALNEICDWLAQRL 415
                 ****************9987 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13   5.7e+02      58      94 ..     171     206 ..     145     240 .. 0.78
   2 ?    9.1   0.0   0.00011      0.48     160     206 ..     253     300 ..     241     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
                 EEEEEEGGGEEEEEEEEEES.SSSSEEEEEEEE-TT- CS
        AXE1  58 dltfegvrgarikaklvlPkekeeklPavvefhGYeg 94 
                  ltf+  +g+++ + l +P   e + P+v+ f G   
  EHU01869.1 171 TLTFHIEGGSPVSGFLHMPPGVEAPYPTVM-FCGALD 206
                 68999999********99999999999875.666555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00011
                 HHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-.SS-SEEEEES- CS
        AXE1 160 rlveivaslpevDeeRvavlGasqGGalalavaale.krikavvadyP 206
                 ++++ +as+p++D++Rva+lG   G  +a+  a le +r++av++  P
  EHU01869.1 253 QVLRDLASVPWIDHTRVAALGFRFGANVAVRLAYLEaPRLRAVACLGP 300
                 5667789****************************8579999998777 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.3e-05      0.28      84     129 ..     253     299 ..     229     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.3e-05
         DLH  84 aavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafY 129
                 + ++ l+svp  ++ +v++ Gf +G+++a+ la  + p++ a++   
  EHU01869.1 253 QVLRDLASVPWIDHTRVAALGFRFGANVAVRLAYLEaPRLRAVACLG 299
                 4567788888889999*****************99989999887654 PP

>> LYTB  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.8e-05      0.26       5      49 ..     270     314 ..     267     329 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.8e-05
                 TT-SS-HHHHHHHHHHHHHHCCC-SEEECS-SSS-HHHHHHHHHC CS
        LYTB   5 ksaGfCfGVerAieiaeealeekkevyvlgeivHNeqvverLeek 49 
                    Gf fG + A+++a+ ++ + ++v +lg+ivH   + ++L++k
  EHU01869.1 270 AALGFRFGANVAVRLAYLEAPRLRAVACLGPIVHSLLTQNTLQNK 314
                 578****************999999*********99888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2975.24
//
Query:       EHU01870.1  [L=133]
Description: DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-51  171.0   0.0    9.8e-51  170.9   0.0    1.0  1  Crl       Sigma factor-binding transcriptional regulator Crl


Domain annotation for each model (and alignments):
>> Crl  Sigma factor-binding transcriptional regulator Crl
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0   5.4e-55   9.8e-51       2     119 ..       5     122 ..       4     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 5.4e-55
                 .XS-HHHHHHHHHCT-TTB-GGG-BTTEEEEEEEEEES-TTS-GGG--EEEEEEEEEEETTEEEEEEEEEEE-TTS-EESEEE--HHHHHHHHHHHHHH CS
         Crl   2 ksptksrllkklkalGPYlreeqceedrfffDCLavCvnakkapekrefwGWWleleaeeeefeyeyqlGlydkegeWkaekikkkeveeklektleef 100
                 + +++srllk++++lGPY+r+ +c+e+rfffDCLa Cvn+k+ape refwGWW+elea+ ++++y y++Gl+dkeg+W+  +ik k+++ ++e+tl++f
  EHU01870.1   5 SGHPRSRLLKRFTELGPYIRDGKCSENRFFFDCLAACVNVKPAPELREFWGWWMELEAQADHVTYVYHIGLFDKEGDWSVATIKGKDNSARVEETLRNF 103
                 679************************************************************************************************ PP

                 HHHHHHHHHHTT-EEEE-G CS
         Crl 101 hkklealleelelelelae 119
                 h +l+++l+e+el+l +a+
  EHU01870.1 104 HGRLKETLKEFELDLVPAS 122
                 **************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1041.16
//
Query:       EHU01871.1  [L=379]
Description: outer membrane phosphoporin protein E [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-139  463.1  29.5   7.1e-139  463.0  29.5    1.0  1  Porin_1    Gram-negative porin
     0.0059   16.8  43.3      0.025   14.7  17.5    3.2  2  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.0  29.5  7.9e-143  7.1e-139       1     340 []      27     379 .]      27     379 .] 0.97

  Alignments for each domain:
  == domain 1  score: 463.0 bits;  conditional E-value: 7.9e-143
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTC..EEEEEEEEEEETTTEEEEEEEEE-TTHHHH CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqs..ktrlaFaGLkfgevGsldyGrnygvvydve 97 
                 Kdgnkld ygkv++ hy+sd+++++gd++y+riGfKG+tqind++tgygqwEy+ ++n++eg++a+s  ktrl+FaGLkf ++Gs+dyGrnygv+ydve
  EHU01871.1  27 KDGNKLDFYGKVKAEHYMSDNAGQNGDKSYVRIGFKGQTQINDMMTGYGQWEYQYNANNSEGSDANSgnKTRLGFAGLKFSQYGSFDYGRNYGVLYDVE 125
                 9*************************************************************966554499**************************** PP

                 CTTTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS............SSTTT-BESEEEEEEEEEETT..EEEEEEEE CS
     Porin_1  98 awtdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedts........tnnrnlkksngdgygvslsYeveGfalsvagaya 188
                 + tdv+pefggd +a+tdnfm +ra+gvatYrn++FfGlvdgl+falqyqgkn+++s        +n  +++++ngdgyg+sl Y +  +++s+ ga++
  EHU01871.1 126 SLTDVFPEFGGDGTARTDNFMAQRATGVATYRNNNFFGLVDGLKFALQYQGKNDNRSansrglnsDNTIDTTRQNGDGYGASLGYTIADTGVSILGAIT 224
                 *******************************************************99888888654447788*************************** PP

                 EEEE-CHHC......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEE...........EEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEE CS
     Porin_1 189 rsdrtakqklelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvg...........asgianktqnlevvaqyqfdfGlrPsiaYvqsk 276
                 +sdrt+ q+      a ++g+g+ka++w +glkYdan +ylaa Y+etrn+t+++            +g ank++nle+vaqyqfdfGlrPsi+Yvq k
  EHU01871.1 225 SSDRTNAQQ------AGAYGHGDKATSWGTGLKYDANSVYLAAIYTETRNMTPITvpgsftnsaksVTGSANKAENLELVAQYQFDFGLRPSIGYVQTK 317
                 *******99......6889********************************************998899****************************** PP

                 EECETTSTCCEEEEEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSCCTSSTSC-EEEEEEEEEE CS
     Porin_1 277 gkdlegkkgdndlvkyvdvGatYyFnKnmsayVdykinlldkdddkelgistddivavglvyqF 340
                 gkd+e+ +g++dlvky+dvGatYyFnKnms++Vdykin+ldkd+  +l +++ddivavgl+yqF
  EHU01871.1 318 GKDIENGIGNEDLVKYIDVGATYYFNKNMSTFVDYKINQLDKDN--KLALNNDDIVAVGLTYQF 379
                 ********************************************..79***************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4  30.2         2   1.8e+04       2     111 ..      12     173 ..       6     256 .. 0.51
   2 !   14.7  17.5   2.8e-06     0.025      42     178 .]     196     379 .]     180     379 .] 0.59

  Alignments for each domain:
  == domain 1  score: -6.4 bits;  conditional E-value: 2
   OMP_b-brl   2 allllaalsaaaaa..assfggfyvggglglskvkvdgvgsdsg.fgfgvgagyefndnvgvegglsy..sgdkdysgs............gktdikin 83 
                 al+l +a++aa  +   +++  fy ++ +  +  ++ g ++d++ + +g+++  ++nd    +g+  y  + +++ +++            g +  +  
  EHU01871.1  12 ALALTSAAQAAEVYnkDGNKLDFYGKVKAEHYMSDNAGQNGDKSyVRIGFKGQTQINDMMTGYGQWEYqyNANNSEGSDansgnktrlgfaGLKFSQYG 110
                 3444444444443355444555555555555544444445554449************54444433332133333233122235666655544444455 PP

   OMP_b-brl  84 llsvpvnagyafnlsdsvlpyggaGlg...................................y 111
                 +++++ n+g+ +++     ++  +G +                                   +
  EHU01871.1 111 SFDYGRNYGVLYDVESLTDVFPEFGGDgtartdnfmaqratgvatyrnnnffglvdglkfalQ 173
                 555666666666664443444444444223444433333333333333333333332222221 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.8e-06
   OMP_b-brl  42 s....gfgfgvgagyefnd.nvgvegglsysgdkdysgs...............gktdikinlls.........vpvnagyafnlsdsvlpyggaGlg. 110
                 +    g+g+g+++gy + d  v++ g ++ s+  ++++                 k+d+++ +l+          p+++  +f +s + ++ g a+ + 
  EHU01871.1 196 TtrqnGDGYGASLGYTIADtGVSILGAITSSDRTNAQQAgayghgdkatswgtgLKYDANSVYLAaiytetrnmTPITVPGSFTNSAK-SVTGSANKAe 293
                 2333388999999999988678887777765554444444444445555554443333332222244444444433333333332222.2222222224 PP

   OMP_b-brl 111 ...................ytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlkn.ntfqvgvgyrF 178
                                    y++++++     ++  + d   ++ +G+ y++++n+s  ++Y+++ l++d++  l+n + + vg+ y+F
  EHU01871.1 294 nlelvaqyqfdfglrpsigYVQTKGKDIE--NGIGNEDLVKYIDVGATYYFNKNMSTFVDYKINQLDKDNKLALNNdDIVAVGLTYQF 379
                 44444444444555555324434444444..488999999999***********************9988888999778899****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3120.98
//
Query:       EHU01872.1  [L=367]
Description: gamma-glutamate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-42  144.7   1.3      5e-42  144.1   1.3    1.2  1  AA_kinase  Amino acid kinase family
    1.9e-20   72.6   0.1    5.2e-20   71.2   0.1    1.8  1  PUA        PUA domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   1.3   5.6e-46     5e-42       2     240 ..       6     234 ..       5     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 5.6e-46
                 EEEEEE-TTCCCCTCC....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHT CS
   AA_kinase   2 rvVvKlGGssltdkee....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaa 96 
                 ++VvKlG s+lt +++    a + +l++q+a+ + +g+++v+V++g ++++g  +l  g+++ + +            +a++++la++g++ + +l+++
  EHU01872.1   6 TLVVKLGTSVLTGGSRrlnrAHMVELVRQCAQQHAAGHRIVIVTSG-AMAAGREHL--GYPELPPT------------IASKQLLAAVGQSRLIQLWEQ 89 
                 79**********88888***99************************.777777777..77777776............5667***************** PP

                 THGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCT CS
   AA_kinase  97 glpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpd 195
                 +++ +g++  ++++t+a+    +d+++  + +++++ ll++ +vpv+++++++ + +   +g++D ++al A + gAdkl++ltd  G+++adp+ +pd
  EHU01872.1  90 LFSIYGIHIGQMLLTRADM---EDRERFLNARDTLRALLDNHIVPVINENDAVATAEI-KVGDNDNLSALAAMLGGADKLLLLTDQQGLFTADPRSNPD 184
                 *******************...***************************997777765.4*************************************** PP

                 TCECCEEEHHHCHH......CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 196 arllpeisvdeaee......saselatgGmkvkhpaalaaarrggipvvIt 240
                 a+l++ + + +         s s+l+tgGm +k++aa  a+r g i+v+I+
  EHU01872.1 185 AQLISDVHIIDDTLralaggSVSGLGTGGMSTKLQAADVACRAG-IDVIIA 234
                 ******954333333699**************************.****96 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   5.8e-24   5.2e-20       1      74 []     276     350 ..     276     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 5.8e-24
                 CEEEE-HHHHHHHHT.T-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHHHCTSEEEEEEEEE CS
         PUA   1 grvvvddgAvkalls.gasLlapGvvevegdfeegdvVaivdedgelvavGlanysseelakikggksveiervl 74 
                 g+++vddgA  a+   g+sLl++G+ e++g+f++g+v++i + +g+ +a G+++y+s+ ++ i+g++s++i ++l
  EHU01872.1 276 GEITVDDGALAAIIArGSSLLPKGIREIQGNFSRGEVIRIRSLQGRDIAHGVSRYNSDAMRMIAGHHSQQISEIL 350
                 789********************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2843.75
//
Query:       EHU01873.1  [L=417]
Description: gamma-glutamylphosphate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-17   63.3   2.0    1.8e-12   46.6   0.4    2.2  2  Aldedh       Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.017   15.6   2.1       0.28   11.8   0.1    2.8  2  FlgT_N       Flagellar assembly protein T, N-terminal domain
      0.061   13.7   0.2        8.6    6.7   0.0    2.6  2  CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, olig


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.4     3e-16   1.8e-12      32     296 ..       3     280 ..       1     301 [. 0.81
   2 !   16.2   0.1   4.8e-07    0.0028     376     461 ..     319     407 ..     318     408 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3e-16
                 HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSEEE..........EEEC.... CS
      Aldedh  32 daavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaeklegev..........lpss.... 115
                 +++ +aA++a  + a+l+a+e+ ++L ++ad le++ e + ++  ++     ++ +   +    d l ++ + ++ ++ +v             +    
  EHU01873.1   3 EEMGKAARAAAWKLADLSAAEKNQVLLTIADRLEAESEGILAANEQDLAEARQNGMSaALL---DRLTLTPARLSAIAHDVrqvcrladpvG--Qvidg 96 
                 566789999999**********************999999888777777666665553332...3333333333332222222233333332..03336 PP

                 ....TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHH.H-TT CS
      Aldedh 116 ....egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealv.ehpe 205
                     +g ++  rr PlGv+g+I  ++   ++++  +  +l +GN+ +l+  +et  + ++ ++++++a    glP+ +++ +  +++e+ ++l+  ++ 
  EHU01873.1  97 glldSGLRIERRRVPLGVIGVI--YEARPNVTVDVASLCLKTGNAAILRGGKETWRTNAATVRVIQNAlqqhGLPSAAIQAIENPDRELVNQLLkLDRY 193
                 67768999999999********..89999*************************999999999999999999************999999988835788 PP

                 ESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 206 vdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                 vd++   G+    +   ++++    +v+    G  ++ + +  D+d+a++ iv++        C + + ll+   ++ +f+ ++ +++++ 
  EHU01873.1 194 VDMLIPRGGAGLHKLCREHST---IPVITGGIGVCHMYIDDTMDIDAALDIIVNAK-KQRPSACNSLETLLIDAAMAARFLPAFMARMAEE 280
                 *********999998888877...99**9999********************9965.667789**********************999764 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.8e-07
                 EEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB-.-CGGGEES...-BSHHHHHHHTEEEEE CS
      Aldedh 376 svikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfg.GvkqSglG...reggkegleeytevkt 461
                  v ++ d +eai+   +     + ++ t++ ++a r++++++   vy+N st+++  a  fg G          + +g+ gle+ t++k+
  EHU01873.1 319 NVKRVADMDEAIAHIREHGTQHSDAILTRSTQNAARFVKQVDSSAVYVNASTRFTDGA-QFGlGAEVAVSTqklHARGPMGLEALTTYKW 407
                 6889***********************************************9888888.6763443322222355666666666666665 PP

>> FlgT_N  Flagellar assembly protein T, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.043   2.6e+02      14      33 ..      45      64 ..      35      81 .. 0.79
   2 ?   11.8   0.1   4.7e-05      0.28       6      46 ..     136     178 ..     134     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.043
      FlgT_N 14 nddiAreqAredAlkqAlly 33
                 ++++ ++Ar++ ++ All+
  EHU01873.1 45 ANEQDLAEARQNGMSAALLD 64
                44444444*********986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.7e-05
      FlgT_N   6 qGeAsIinnd.diAre.qAredAlkqAllyagaqvgsisslqq 46 
                 +G+A+I+ ++ ++ r+ +A+ +++++Al++ g+ +  i+++++
  EHU01873.1 136 TGNAAILRGGkETWRTnAATVRVIQNALQQHGLPSAAIQAIEN 178
                 8*****887757755416899************9999998775 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0092        55      43      81 ..      27      73 ..      17      95 .. 0.73
   2 ?    6.7   0.0    0.0014       8.6      65     117 ..     319     372 ..     292     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0092
  CPSase_L_D3 43 elvelekelkkkkk...eldeellreakklGfsDkqiaell.....e 81
                  l++++++l+++++     +e+ l ea++ G+s + + +l+      
   EHU01873.1 27 VLLTIADRLEAESEgilAANEQDLAEARQNGMSAALLDRLTltparL 73
                 56677777777777777889999**************9997444331 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
  CPSase_L_D3  65 eakklGfsDkqiaell.eeeeeeevrelrkklgilpvykrvDtcAaeFeaetpY 117
                  ++k++   D+ ia++  + +++++   +r+ +++   +k+vD  A   +a+t +
   EHU01873.1 319 NVKRVADMDEAIAHIReHGTQHSDAILTRSTQNAARFVKQVDSSAVYVNASTRF 372
                  567788889999999763355566777888999999*********999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3206.64
//
Query:       EHU01874.1  [L=243]
Description: transcriptional activator-regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-08   33.9   0.0    3.8e-08   33.2   0.0    1.4  1  Peptidase_S24  Peptidase S24-like
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.056   13.5   0.0    1.7  1  HTH_3          Helix-turn-helix


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.3e-12   3.8e-08       3      69 ..     154     219 ..     152     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 4.3e-12
                    XSSTTCCTXXTTXEEEEECTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SSTTSTEEEECT CS
  Peptidase_S24   3 pGdSMeptlldGdlilVdkfsepkrGdivvfrlpgeeeayiKrviglpgdrvllasnneypplying 69 
                    ++d M +t+ + d ++Vd +++  +Gd +++ + +++ +y Kr++ +++++  ++ n+ y+++y+++
     EHU01874.1 154 NSDAMSDTFAPRDQLFVDISVQTFDGDGIYIFTLDDR-LYLKRLQLQHKRIAVISDNKRYETWYLDR 219
                    699************************6666555665.*******77777777666656*****976 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.3e-06     0.056      21      55 .]      44      78 ..      36      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.3e-06
                SSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3 21 vsrstisriEnGernPsletlkklakaLgvsldel 55
                +s   + +++n ++ P+  +l++l++ Lgv  ++l
  EHU01874.1 44 ISAPGVWKWFNAQSVPDNGNLLALSQLLGVRVEWL 78
                66777779*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1948.59
//
Query:       EHU01875.1  [L=92]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 758.32
//
Query:       EHU01876.1  [L=141]
Description: hypothetical protein CKS_0330 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.19   12.2   0.0       0.27   11.7   0.0    1.2  1  Phage_lysozyme  Phage lysozyme


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.5e-05      0.27      43      78 ..      76     111 ..      51     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
                     TTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHH CS
  Phage_lysozyme  43 ikvkdfepnqqdalvslafnvGkgGkrkastllral 78 
                        ++ ++ + d l+s+a++ G+ G  ++ t  ++l
      EHU01876.1  76 LALEKCNEARTDVLMSMAYQLGVDGILQFKTCSTRL 111
                     333899********************9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1262.96
//
Query:       EHU01877.1  [L=115]
Description: hypothetical protein CKS_0331 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.2    9.4   7.1         15    5.8   7.1    2.3  1  UPF0114   Uncharacterized protein family, UPF0114


Domain annotation for each model (and alignments):
>> UPF0114  Uncharacterized protein family, UPF0114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.1   0.00082        15       4      87 ..       1     110 [.       1     115 [] 0.56

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00082
     UPF0114   4 sRflvllavlglllaslllfikgvle.llelvveafk................a............klteelilavleliDlvLigtvllivglGlYel 73 
                 +R+l++++ + +++  lll+  +++  +++ ++ +fk                +            +l  e + ++l    l Lig   ++v++G+   
  EHU01877.1   1 MRWLLFIIAVLSVIIILLLMQRFTTLqFVSHAKLLFKtwsvwlaslgsmlsawVqsfpssalnawqTLP-EDVKSILPHNYLGLIG--AFMVAMGVIAQ 96 
                 69***9999999999999999997650444444445477677776666555440555555444332111.2233333333333333..34566777777 PP

     UPF0114  74 Fvskldleeeeerp 87 
                 Fv++ +l +e++++
  EHU01877.1  97 FVRQKTLLNEKRQS 110
                 77777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1034.56
//
Query:       EHU01878.1  [L=97]
Description: hypothetical protein CKS_0332 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   14.7   4.7       0.03   14.3   4.7    1.2  1  DUF2514    Protein of unknown function (DUF2514)
      0.033   14.1   5.0       0.04   13.9   5.0    1.1  1  Oberon_cc  Coiled-coil region of Oberon


Domain annotation for each model (and alignments):
>> DUF2514  Protein of unknown function (DUF2514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.7   3.4e-06      0.03       1      70 [.      14      84 ..      12      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-06
     DUF2514  1 Wkqlavvlvlv.aalvwG.fahGrskeeaewekrwadrdaedsqakviaeeaaReeeqrrkaaaekavkdaq 70
                W   + +l+++  a+++G  + G+++++a+ e++ a+++a d+  k++ +++   ee +r a+ +   +da 
  EHU01878.1 14 WLAALGALMAAfGASYFGgKKIGKVQQQAQSEAEGARQEA-DRLTKITHQQQHNSEEAKRVATDNLNLDDAA 84
                4444444444325788888899999999999998887777.9*********************998888875 PP

>> Oberon_cc  Coiled-coil region of Oberon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.0   4.4e-06      0.04      53      98 ..      43      88 ..      39      96 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.4e-06
   Oberon_cc 53 qlkAdeArreaerlrrialaksekleeeyaskylklrLeEaeeekr 98
                q+ A+ Ar+ea+rl +i++ +++++ee        l L +a ++ +
  EHU01878.1 43 QSEAEGARQEADRLTKITHQQQHNSEEAKRVATDNLNLDDAAARDK 88
                789****************999999997777777777777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2012  (0.11222); expected 358.6 (0.02)
Passed bias filter:                      764  (0.0426125); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 920.39
//
Query:       EHU01879.1  [L=582]
Description: putative virulence factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-10   41.3   1.0    6.3e-10   39.3   1.0    2.1  1  Pectate_lyase_3  Pectate lyase superfamily protein
  ------ inclusion threshold ------
      0.022   14.4   0.0      0.057   13.1   0.0    1.7  1  End_N_terminal   N terminal extension of bacteriophage endosi


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   1.0     7e-14   6.3e-10       2     211 ..      74     324 ..      73     328 .. 0.64

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 7e-14
                      EEGGGGT---EEEEE-HHHHHHHH.........HTSS-EEE-SEEEEESS-EEE-SSEEEEES-....................TTTEEEEE-T CS
  Pectate_lyase_3   2 rnVkdyGakgDGvtDdtaaiqkais...casatttgavVYfPaGtYlvsspiilksgvqLvGdg....................ngrpvlkaaa 72 
                      +n+ ++GakgDGvtDdt a+++++      s++ +g  V fP G +l+ ++  +  ++ ++G +                    n+ + +ka+ 
       EHU01879.1  74 VNILHFGAKGDGVTDDTDAFKRILGwsqTYSQNMKGLPVRFPGGRFLIMPMDLSDTEMPFFGLAgddlalgslpgttlisdksaNTLFKVKARR 167
                      79**********************8888999999*****************9888888888877566777776666666666664445555544 PP

                      T-SS--SEEES-TT...T-........-EEEEEEEEEEE..GGGG-SS---S...SEEEES-EEEEEEEEEEES-SSEEE-SSS.......--- CS
  Pectate_lyase_3  73 afvgaglidgdpyv...sggs......ealiatnnfyrq..irnlkiditav...apgatgihwqtaqatslenvefemseasg.......tkh 145
                         +  + dg+  +      +      e + +t+ f+++  +   +++i+ +    +g+t  + q   + ++e++  +++++s        ++ 
       EHU01879.1 168 TTIRGITWDGQASAdivA--NkanitpEMCSNTQPFFENicVEGQIVNISCFrgqRSGGTIFKLQDTLDSKFEQIY-TNTTYSRvfdigwsNSP 258
                      442222223332222211..12224556666666666663222233333333543333355666666666666653.33333322333444444 PP

                      TT---SS--EEEEES-EEES-SS-SEEE.S-EEEEEES-EEE-S--SEEE-TT-EEEEEEEEEESSS CS
  Pectate_lyase_3 146 qgifiengsggflndlvfsglgdigiav.gnqqftvrnitfnnattgievlwgwgwtlknvkinnce 211
                      +g+  ++++ +  n  + +g+gd  + + +  q+++rn+ ++++ +  +++ + gwt+  +++++c 
       EHU01879.1 259 NGVWDHSTAVELCNANFQTGYGDATLYMpRMTQAIMRNVWIEHTRNPGDLS-DGGWTIDTLNVEDCS 324
                      455444444455567777778888888877999999999999988888887.677999889999986 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.3e-06     0.057       1      20 [.      81     100 ..      81     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-06
                     ---EEEEE-HHHHHHHHHHS CS
  End_N_terminal   1 akGDGvtdDtdalsevlaaa 20 
                     akGDGvtdDtda + +l  +
      EHU01879.1  81 AKGDGVTDDTDAFKRILGWS 100
                     89************999754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4589.31
//
Query:       EHU01880.1  [L=365]
Description: glycerol dehydrogenase, NAD [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-69  232.4   5.7    7.7e-69  232.2   5.7    1.0  1  Fe-ADH         Iron-containing alcohol dehydrogenase
    3.9e-33  115.2   0.6    4.9e-33  114.9   0.6    1.1  1  Fe-ADH_2       Iron-containing alcohol dehydrogenase
    1.8e-05   24.1   2.0    9.1e-05   21.7   2.0    2.1  1  DHQ_synthase   3-dehydroquinate synthase
     0.0097   15.6   0.9       0.59    9.9   0.1    3.1  3  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
      0.035   13.4   0.0      0.065   12.6   0.0    1.4  1  PFK            Phosphofructokinase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.2   5.7   2.1e-72   7.7e-69       1     364 []       8     348 ..       8     348 .. 0.94

  Alignments for each domain:
  == domain 1  score: 232.2 bits;  conditional E-value: 2.1e-72
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P ++++g++al + ge++k+l  ++ ++++d  ++ k+ + d+vl+ l+++ ++++  ++++++++ +e+e++ al++++g+ +vi++GGG+++DtAKa
  EHU01880.1   8 PAKYIQGPDALLSFGEYAKNLA-NHFFVIADDVVM-KL-AGDQVLTGLASHSVTCH-AERFNGECCRTEIERLMALVEQHGCRCVIGLGGGKTLDTAKA 102
                 89*******************7.9*********88.77.99*******77777666.89**************************************** PP

                 HHHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvs 198
                 +a +l+                  lp+++iPT+a+t++++++l+vi+ +e+ge  ++  ++ +Pd++++D+++++++P r+++a+++Dal++++Ea ++
  EHU01880.1 103 VAWYLK------------------LPVVVIPTIASTDAPTSALSVIY-TESGEFAEYLIYPKNPDMVVMDTTIIAKAPVRLLVAGMGDALSTWFEAKAC 182
                 ******..................***********************.999988888888************************************998 PP

                 .H.T---TTSS.B--HHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHH.HHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH. CS
      Fe-ADH 199 .k.kanplsda.laleairliaknleravadgedl..........eareqmllastl.aglafsnaglgavHalahalgalfgiphglanaillpavlr 283
                    +a+ +  +  + +a+ l++ ++e+++a+ge++          ea e++++a+t+ +g++f+++gl+a+Ha+++a++  ++  h+l +++++++++ 
  EHU01880.1 183 yDsGATSMAGGkSTAAALSLARLCYETLLAEGEKArcaaqagvvtEALERIVEANTYlSGIGFESSGLAAAHAIHNAFTV-LEECHHLYHGEKVAFGT- 279
                 63466665555599999**************99778999*****************99**********************.8888*************. PP

                 .........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-...HHHHHHHHHT-T.SGGGGSSS---HHHH CS
      Fe-ADH 284 fnaeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvdee...dldklaeaalkd.rslannpreltaedv 364
                          laql+         +++ ++ie + ++++++glp++L+++gv++    ++ ++a+aa+ + ++++n+p+++t+++v
  EHU01880.1 280 ---------LAQLVLQ-------NSPTDEIETVLNFCQKVGLPVTLAQMGVKHGieeKVSAVAHAACVEgETIHNMPFPVTPDSV 348
                 .........9999999.......89************************9998445699**********************9875 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.6   1.4e-36   4.9e-33       4     250 .]      15     276 ..      12     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 1.4e-36
    Fe-ADH_2   4 egaleklgellkelelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvpy 102
                 ++al + ge+ k+l +++++++ad  + k+ag++v   l+++ ++++  e++++e   +e+e+l++ ++++++ +v+++GgG+ +D+ak v+  l++p+
  EHU01880.1  15 PDALLSFGEYAKNL-ANHFFVIADDVVMKLAGDQVLTGLASHSVTCH-AERFNGECCRTEIERLMALVEQHGCRCVIGLGGGKTLDTAKAVAWYLKLPV 111
                 56677777776655.57899**************************9.55699********************************************** PP

    Fe-ADH_2 103 vsvpTaaSvDGfaspgaslvvd.gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkyt...aladwklan.......evse..plaklsaa 187
                 v++pT aS D  +s  + ++++ g+   + +  + P  v++D++++a+AP rll +G+GD+l+ +    a +d+ +++       +  +  +la+l  +
  EHU01880.1 112 VVIPTIASTDAPTSALSVIYTEsGEFAEYlIYPKNPDMVVMDTTIIAKAPVRLLVAGMGDALSTWFeakACYDSGATSmaggkstA--AalSLARLCYE 208
                 *********************9977777777789******************************9854455566666644444322..12344455545 PP

    Fe-ADH_2 188 mvqeaaekl...vedkketealeelleal.alsgigisrpaSGsEHliSHaldmlal.kqalHGeqVG 250
                 ++  + ek+   ++++  teale+++ea   lsgig+++++  + H i  a+  l++ ++  HGe+V+
  EHU01880.1 209 TLLAEGEKArcaAQAGVVTEALERIVEANtYLSGIGFESSGLAAAHAIHNAFTVLEEcHHLYHGEKVA 276
                 4444433331113334459999****99659*****************99998776656899****96 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   2.0   2.5e-08   9.1e-05      32     245 ..      86     312 ..      66     329 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.5e-08
                   -EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEE..EEEEEE---SEEEEEGGGGGGS-HHHHHHHHHHHHHH... CS
  DHQ_synthase  32 sllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgK..NliGafaqPkavlidlevLktLperelraGlaEviKy... 123
                    ++i lGGG  +D a  vA      + +v +Pt  +a  D+   +   i ++ g     +    +P++v++d+++++  p r l aG+++++ +   
    EHU01880.1  86 RCVIGLGGGKTLDTAKAVAWY--LKLPVVVIPT--IASTDAPTSALSVIYTESGEfaEYLIYPKNPDMVVMDTTIIAKAPVRLLVAGMGDALSTwfe 178
                   58999********99877643..3489999998..899999999999999988762244555579*************************9876111 PP

                   .HHHT-HHHHHHHHHHHHHHHC.............TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGG....GGTTHHHHHHHHHHHTTTTS-HHH CS
  DHQ_synthase 124 .alikdeelfelleenaeallk.............eeeeealeeliarsievkaevveeDekekglral....LnlGHtigHaiEallgyekllHGe 202
                     ++ d+   ++   +++a  +             e e++ +++     +e+ +++ve++ + +g+  +    L   H i  a+  l + ++l HGe
    EHU01880.1 179 aKACYDSGATSMAGGKSTAA-AlslarlcyetllaEGEKARCAAQAGVVTEALERIVEANTYLSGIG-FessgLAAAHAIHNAFTVLEECHHLYHGE 273
                   13444554444443333333.2467776655554311222222222222333335555555555432.112225555555555555556699***** PP

                   HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT CS
  DHQ_synthase 203 aVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel 245
                    Va+G ++++ l ++    +++e+e++l++++k+glpv+l + 
    EHU01880.1 274 KVAFGTLAQLVLQNS----PTDEIETVLNFCQKVGLPVTLAQM 312
                   *******99999854....5789***************99987 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.98   3.5e+03      12      36 ..      72      97 ..      70     108 .. 0.75
   2 !    9.9   0.1   0.00016      0.59      31     100 ..     185     251 ..     138     269 .. 0.80
   3 ?    2.9   0.0     0.024        85       3      30 ..     283     310 ..     281     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.98
                   HHHHHHHHHHHCTSC.EEEESSSTTE CS
  FAD_binding_4 12 evaaalrlaneaglp.vlvrGgGssl 36
                   e++++++l +++g + v+ +GgG  l
     EHU01880.1 72 EIERLMALVEQHGCRcVIGLGGGKTL 97
                   78889999999988746668888766 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00016
                    SSSTTEESTTCSCCEEEEEETT.S--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBH CS
  FAD_binding_4  31 GgGssllgqavatggvvldlsr.lnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtv 100
                    +g +s++g++  + +  l+l r     l  + e+ ++ ++aGv+ ++l++ ++a+ +l g+ ++s  +g +
     EHU01880.1 185 SGATSMAGGK--STAAALSLARlCYETLLAEGEKARCAAQAGVVTEALERIVEANTYLSGIGFES--SGLA 251
                    5677888555..4566777777433345555679*******************999999976665..3444 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.024
                    EEEEESSHHHHHHHHHHHHHCTSCEEEE CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvr 30 
                    +v++ + ++e++++l+++++ glpv+  
     EHU01880.1 283 LVLQNSPTDEIETVLNFCQKVGLPVTLA 310
                    566677799***************9975 PP

>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05     0.065      72     137 ..      65     125 ..      36     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
                 GGGGSHHHHHHHHHHHHHHT--EEEEEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT- CS
         PFK  72 kefkeregrkkaaenlkklgidaLvviGGdgslkganklseerkglleelkivgiPkTidNDipgt 137
                 +    r +++++++ ++++g ++++ +GG ++l++a++ + +  +    l++v+iP   + D p +
  EHU01880.1  65 NGECCRTEIERLMALVEQHGCRCVIGLGGGKTLDTAKAVAWYL-K----LPVVVIPTIASTDAPTS 125
                 444345569999****************************887.7....9******8878777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2652.46
//
Query:       EHU01881.1  [L=356]
Description: ATP-dependent dihydroxyacetone kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.1e-125  416.2   0.0     7e-125  416.0   0.0    1.0  1  Dak1      Dak1 domain
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.34   10.8   0.0    1.5  1  SH3_13    ATP-dependent RecD-like DNA helicase SH3 domain


Domain annotation for each model (and alignments):
>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.0   0.0  7.8e-129    7e-125       2     311 .]      18     351 ..      17     351 .. 0.96

  Alignments for each domain:
  == domain 1  score: 416.0 bits;  conditional E-value: 7.8e-129
                 HHHHH-TTEEEETTTTEEEETT-S-TTS-EEEEEEEESSTTTTGGGBSBTSBSEEEEEEETS---HHHHHHHHHHH--SS-EEEEEESSHHHHHHHHHH CS
        Dak1   2 GlvaanpelklleeekvvvrkkekkkgkValisgGGSGHePahagfVGkgmldaavaGevFaSPsakqilaaikavdsgkGvllivkNYtGDvlnfglA 100
                 G+++a+pel+l++++ +++r++++ +gkVal+sgGGSGHeP+h+gf+G gml++a++Ge+F+SP+++++++++ ++d+g+Gvl+i+kNYtGD+lnf++A
  EHU01881.1  18 GFARAHPELTLHQDPVCMTRADAPVAGKVALLSGGGSGHEPMHCGFIGPGMLSGACPGEIFTSPTPDKMYECAMKIDGGEGVLMIIKNYTGDILNFETA 116
                 99************************************************************************************************* PP

                 HHHHHHTT--EEEEEE--B-SSSSSTTCSSSB--THHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTEEEEEEEEE--B-TTTSSBSS---TTEEEETE CS
        Dak1 101 aekakaegikvetvvvdDDvavedseekagrRGvagtvlveKiaGaaAeegasLeevaelaekvaenlrsigvalsactvpgagkpsfelaedeielGl 199
                 +e+++++g+kv+tvvvdDDvav+ds +++grRGva tvl+eK++GaaAe+g+sLe++a+l++k+++  +sig+al actvp+agk+sfel+++e+e+G+
  EHU01881.1 117 TELLHESGVKVTTVVVDDDVAVKDSLYTTGRRGVANTVLIEKLLGAAAERGDSLEACAALGRKLNNLGHSIGIALGACTVPAAGKRSFELQDNEMEFGV 215
                 *************************************************************************************************** PP

                 -TTS---SEEEE---HHHHHHHHHHHHHH......T........................T-EEEEEEEE-BSS-HHHHHHHHHHHHHHHHHTT-EEEE CS
        Dak1 200 GiHgEpGvervklksadelveelleklledke.lkk........................gdevvllvNglGgtsllelyivarevaelleekgikvvr 273
                 GiHgEpG++r++++s d++v+e++++lle+ +   +                        gd+v++lvN+lG+t+l+ely v++++a+ ++e+gi+++r
  EHU01881.1 216 GIHGEPGIDRRTFTSLDKTVDEMFDTLLENGNyS-RtlrhwdqnngswqevkhskqaltrGDRVIALVNNLGATPLSELYGVYNRLAQRCDESGITIAR 313
                 ****************************955541.2344555667788888889999999*************************************** PP

                 EEEESSS--TTBEEEEEEEEEE-HHHHHHHHS-EESSS CS
        Dak1 274 vlvGeyvTsldmaGfsitllklddellelldapvetpa 311
                 +lvG+y+Tsldm Gfsitll +dde l+l+dapv+tpa
  EHU01881.1 314 NLVGSYCTSLDMVGFSITLLSVDDEALSLWDAPVHTPA 351
                 ***********************************986 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.8e-05      0.34      15      45 ..     261     298 ..     251     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.8e-05
      SH3_13  15 kkkevkvggrvfrvgDkVmqlkNnydk.......gvfN 45 
                 + +evk++++ +  gD+V+ l+Nn          gv+N
  EHU01881.1 261 SWQEVKHSKQALTRGDRVIALVNNLGAtplselyGVYN 298
                 46789999999*************87666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2669.55
//
Query:       EHU01882.1  [L=210]
Description: dihydroxyacetone kinase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-54  181.9   2.3    1.1e-53  181.7   2.3    1.0  1  Dak2      DAK2 domain


Domain annotation for each model (and alignments):
>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   2.3   6.1e-58   1.1e-53       1     173 [.      32     205 ..      32     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 6.1e-58
                 TTS-S-HHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHC.....TT---HHHHHHHHHHHHHHHH---TTSSST CS
        Dak2   1 pvGDGDtGtnmargaeavlkaleeleeaslaevlkalakallsgagGtsGvlysqflralakalkekeeldaedlaaalkaaleaiqavgkarpgdkTm 99 
                 ++GD+D+G nm+rg+++v+++l + ++++++ +lk+ +++lls++gG+sG+l+++f+ ++a+  + +++l+ e+l +++++++e++ ++gka+pgdkTm
  EHU01882.1  32 EIGDADHGLNMHRGFSKVVEKLPAIADKDIGFILKNTGMTLLSNVGGASGPLFGTFFIRAAQVTQAHQSLTLEELYQMIREGAEGVVNRGKAEPGDKTM 130
                 59************************************************************************************************* PP

                 HHHHHHHHHHHHT............T---HHHHHHHHHHCCS---SSGGGGGGGGGTTS--HHHHHHHHHHHHHH CS
        Dak2 100 lDvlrpavealekakd.gedlkealekaakaaekgaeaTkellaklgrAsylgerslgvvDpGAvglalileala 173
                 +Dv+ ++v +l++a + + ++ +al++a+++ae +a aT  ++a++grAsylgers+g++DpGA++++ +++ la
  EHU01882.1 131 CDVWLAVVASLRHASEqNMSVIAALDAACEQAETAAHATITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLA 205
                 *************8888****************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1562.65
//
Query:       EHU01883.1  [L=473]
Description: dihydroxyacetone kinase phosphoryl donor subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-25   88.5   2.4    7.6e-25   87.4   2.4    1.6  1  EIIA-man         PTS system fructose IIA component
    1.4e-20   73.6   0.5    1.4e-20   73.6   0.5    2.0  2  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    2.6e-15   56.4   1.4    4.1e-15   55.8   0.0    2.2  2  PTS-HPr          PTS HPr component phosphorylation site
    2.4e-13   49.6   0.2    6.5e-13   48.2   0.2    1.7  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
      0.013   14.7   1.0      0.031   13.5   1.0    1.6  1  LSDAT_prok       SLOG in TRPM, prokaryote


Domain annotation for each model (and alignments):
>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   2.4   2.1e-28   7.6e-25       2     116 .]       4     121 ..       3     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 2.1e-28
                 EEEEESB.CHHHHHHHHHHCCHSSS-SCEEEEEC-TT..S-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC--CHHHH CS
    EIIA-man   2 ivivsHg.elAeglaelleelagedqekviavggtpd..esigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitgvnlPlve 97 
                 +vivsH+  l++g+ +l+++++ +d++k+++++g++d    igt+  k+++aie+v ++d+vlv++D+g+a +++e+alel++   +++++++ +Plve
  EHU01883.1   4 LVIVSHSaLLGNGVEMLARQMLTGDRCKLAVAAGIDDpdHPIGTDPVKVMAAIESVADADHVLVMMDMGSALLSAETALELLDPAIAAKVRLCAAPLVE 102
                 8***********************9**********987689********************************************************** PP

                 HHHHHHCHHHCCHHHHHHH CS
    EIIA-man  98 eavaarasaslgelvekvl 116
                 +++aa++sa++g+++ekv+
  EHU01883.1 103 GTLAATVSAAAGADIEKVM 121
                 ****************986 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4       1.2   4.2e+03      20      50 ..     108     138 ..      88     158 .. 0.62
   2 !   73.6   0.5   3.9e-24   1.4e-20       8     116 .]     256     370 ..     254     370 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                      -----G.GGHHHHHHHHHHHHHHHHHHHHHH CS
  PEP-utilisers_N  20 eeeeveaedveaelerleeAlekvreeleal 50 
                      ++++++ +d+e+ ++   +Ale+ +++l  +
       EHU01883.1 108 TVSAAAGADIEKVMTVAMKALEAKQAQLGIA 138
                      4445555666666666667777776666544 PP

  == domain 2  score: 73.6 bits;  conditional E-value: 3.9e-24
                      SEEEEEEE....---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT--HHHHH CS
  PEP-utilisers_N   8 GiaiGkav....eveveeeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleeveerIregglnaeaAv 94 
                      G + Gkav       ++ ++ +++d ++e++rl++A++ +  +l+al+++a    ge+ aaif+ h mll+D ++ +e+ e+Ir+++++ae+A+
       EHU01883.1 256 GQVQGKAVfyplP-LAQPDRRPCADEQQECRRLKQAIADTLCDLDALHKRAeanYGEAVAAIFAGHHMLLDDADMFDEACEKIRAARCCAESAW 348
                      5567899999852.3456667888999*******************9999998877778*********************************** PP

                      HHHHHHHHHHHHHTT-HHHHHH CS
  PEP-utilisers_N  95 eevveefaaqfealddeylreR 116
                       ev+ ++ +q+++ldd+yl++R
       EHU01883.1 349 YEVLMALSQQYRQLDDAYLQAR 370
                      ********************99 PP

>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       3.7   1.3e+04      39      53 ..      58      72 ..      50      74 .. 0.72
   2 !   55.8   0.0   1.1e-18   4.1e-15       3      80 ..     158     235 ..     156     237 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.7
                ..EETTSHHHHHHCT CS
     PTS-HPr 39 kpvnaksilglmsLg 53
                + ++a+ +l +m +g
  EHU01883.1 58 SVADADHVLVMMDMG 72
                348999999999887 PP

  == domain 2  score: 55.8 bits;  conditional E-value: 1.1e-18
                 EEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHH CS
     PTS-HPr   3 kkvtiknekGlhaRpAamlvqaasefksevtlekkdkpvnaksilglmsLgvkkGeevtvsaeGedeeealealaell 80 
                  +vt+kn +Glh  pA++lv + + f++e  l+k ++ v  +s+ ++  L+v++++++t+sa+G+++ +alea+++l 
  EHU01883.1 158 VTVTVKNHHGLHVCPASRLVATLAGFDAELVLKKDNQCVTPDSLNQIALLQVRCNDQITLSARGPEAGAALEAFTSLA 235
                 68*******************************9669************************************99885 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   1.8e-16   6.5e-13       5      70 ..     398     465 ..     394     467 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.8e-16
                    -EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEET CS
  PEP-utilizers   5 gvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDg 70 
                    ++IL+a+++ ps +a ld  +++Gi+  +G++ SHaAi+Are g+  +++ g+++  ++ +d++ +D 
     EHU01883.1 398 PAILIADDIFPSAVASLDvkQIKGICLREGSALSHAAIIAREAGVAFLCQQGDMLDIIQPEDRLMIDV 465
                    47*****************************************************666666**99996 PP

>> LSDAT_prok  SLOG in TRPM, prokaryote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   8.7e-06     0.031      27      95 ..      95     167 ..      72     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.7e-06
  LSDAT_prok  27 avlaplaealgavvidgGtdtGvmkllgraraaveatfpLiGVApegtValpdepak....tkdeaeLephHt 95 
                  + apl+e + a+ ++  + + ++k++  a +a+ea+   +G+Ap++ Va  ++ ++    ++ ++++++hH 
  EHU01883.1  95 LCAAPLVEGTLAATVSAAAGADIEKVMTVAMKALEAKQAQLGIAPDSAVASVATVNPhedaQSVTVTVKNHHG 167
                 56699999999**************************************988744443565557888889986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3372.91
//
Query:       EHU01884.1  [L=554]
Description: putative HlyB family hemolysin activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-95  317.6   9.1    1.2e-94  317.3   9.1    1.1  1  ShlB      Haemolysin secretion/activation protein ShlB/FhaC/H
    6.9e-25   86.7   0.1    7.7e-24   83.3   0.1    2.3  2  POTRA_2   POTRA domain, ShlB-type
    1.8e-19   68.9   0.4    3.7e-19   67.9   0.4    1.6  1  POTRA_3   POTRA domain
  ------ inclusion threshold ------
      0.035   14.7   0.0       0.37   11.4   0.0    2.3  2  POTRA     Surface antigen variable number repeat


Domain annotation for each model (and alignments):
>> ShlB  Haemolysin secretion/activation protein ShlB/FhaC/HecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.3   9.1   2.7e-98   1.2e-94       1     310 [.     205     516 ..     205     518 .. 0.98

  Alignments for each domain:
  == domain 1  score: 317.3 bits;  conditional E-value: 2.7e-98
                 TEEEEEEEEEE-SS-EEEEEEEE-S-TTEEEEEEEEEEEEE-SSSSS-EEEEEEEEEEESSTTT-EEEEEEEEEEEEETTEEEEEEEEEEEEEEE---- CS
        ShlB   1 GeSdvvitnqrskpwrlslslDNsGskstGryqgsaslsldnllglnDllslsysrdldkeksdrgsrsyslsysvPygywtfslsaseseykqtvaga 99 
                 G+S+v++t +++ p++++l++DNsG+++tG  q++asl+ +nllgl+D++ +s++r+ ++ ++ r+ +++++++svPygy ++++s+s+s+y++++ ++
  EHU01884.1 205 GYSIVNLTARPEFPLSMTLGFDNSGQRTTGVGQLTASLTGNNLLGLADRWFVSGGRSSAF-SRWRDAQNLQAGVSVPYGYGLLDYSYSWSNYHSHFINN 302
                 9***********************************************************.88************************************ PP

                 ----EEEEEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEE-----------..... CS
        ShlB 100 nqtykssGksknlslklsrvlyRdqssktslsaqlekkrsknyindtelevqsrrltslelglnhrqylgggvldldlgykrGlgwfgaqedke.e... 194
                   t+ s+G++  ++l+ s+vl+R+ + kt ++a+l++ +s+n++nd+ l ++sr+ltsl++glnh+q++ ggv++l+  ++rG++wf+a++d+  +   
  EHU01884.1 303 GFTWFSNGDNIAHRLNGSWVLFRNGDIKTGVQAGLNHYSSHNWLNDAPLVSSSRKLTSLQFGLNHTQKIAGGVATLNPTFSRGMPWFDAESDAGkNgsl 401
                 *********************************************************************************************972568 PP

                 ...--EEEEEEEEEEEEEETTEE.EEEEEEEEEEE-SS-SSCCCSEEESSTTSSTT--TT-EEESEEEEEEEEEEEEEEEEE--CEEEEEEEEEEEEEE CS
        ShlB 195 ptaqfrkltldlslsqpfalkqqklryssslsgQyskdaLysseqlsiGgrytVRGFdeqslsgdsGfylrNelswplalklalselepylglDyGrvk 293
                 p+a+frk+++++s+++p++   qkl++ ssl+gQ+s+d+Ly+se+l+iGg+++VRGF+eq+lsgd G ylrNel ++l++ ++l+++++ +++D+G+++
  EHU01884.1 402 PKAEFRKWSISASYQKPLT---QKLWWLSSLYGQWSPDTLYGSERLTIGGESSVRGFKEQYLSGDVGGYLRNELDYSLFTLPGLGDVTALAAVDGGWLR 497
                 *****************99...56*****************************************************779******************* PP

                 E-SSS-EEE..EEEEEEEE CS
        ShlB 294 gkassaeel..laGaalGl 310
                 ++  + + +  ++G+a+Gl
  EHU01884.1 498 SDPLNPQFTgtIWGSAVGL 516
                 *8888888899*******8 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.1   1.7e-27   7.7e-24       1      76 []      72     147 ..      72     147 .. 0.99
   2 ?    0.5   0.0      0.12   5.4e+02      25      44 ..     168     187 ..     152     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 1.7e-27
                 EE.SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEEEECCEETTEEEEEEE-- CS
     POTRA_2   1 fpikkielegntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrvllppqdlesGtlklkVveG 76 
                 fp+++i+++++tlls+++ +al+ +y+++cl+l+++n+l+++++++y ++GY+tsr++l +qdl sG+l++ V+eG
  EHU01884.1  72 FPVHQIVIRNATLLSERQQAALTSAYVNHCLNLTQINALVHAISDWYMQRGYITSRAFLTEQDLTSGQLIIPVLEG 147
                 89*************************************************************************9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                 CCSSSEEEHHHHHHHHHHHH CS
     POTRA_2  25 pylgkclgladlnqlakelt 44 
                  ++gk l+l d++q + +++
  EHU01884.1 168 GMEGKILNLRDIEQGMEQIN 187
                 57999***********9997 PP

>> POTRA_3  POTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.4   8.4e-23   3.7e-19       1      56 []     148     200 ..     148     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 8.4e-23
                 EEEEEEETTEE-SHHHHHHHHSTT-TT-B--HHHHHHHHHHHTSSSEE.EEEEEEE CS
     POTRA_3   1 kieairlngkssktdaglataFPaskGdvLnLrdiEQGleqlnRlpsnqaeiqIlP 56 
                 k+++i l+g   k  + l+++FP+ +G++LnLrdiEQG+eq+nR++++ ++i+I+P
  EHU01884.1 148 KLDTIILDG---KHPRILRMVFPGMEGKILNLRDIEQGMEQINRVRTVPVQIEIQP 200
                 567888887...36899**************************************9 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.2e-05      0.37       3      57 ..      74     128 ..      72     147 .. 0.81
   2 ?    0.3   0.0      0.23     1e+03      19      44 ..     162     187 ..     156     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.2e-05
                 EEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE CS
       POTRA   3 ikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasV 57 
                 +++i++ +++ +++++  ++ +   +  +n  +++a + a+++ y+++Gy++ + 
  EHU01884.1  74 VHQIVIRNATLLSERQQAALTSAYVNHCLNLTQINALVHAISDWYMQRGYITSRA 128
                 7888888888889999999999999999**********************98665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
                 HHTTTSSSTTSBHCHHHHHHHHHHHH CS
       POTRA  19 lrrelelkegdvynpekleadkealk 44 
                 lr +++  eg+++n  ++e+  e+++
  EHU01884.1 162 LRMVFPGMEGKILNLRDIEQGMEQIN 187
                 6666777899*********9999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4182.02
//
Query:       EHU01885.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.7e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.6e-06   26.5   0.3    3.6e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.087   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01885.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01885.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01885.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01885.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01885.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01885.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.6e-09   3.6e-06       3      52 ..      75     124 ..      73     129 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01885.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.6e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01885.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************98 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01885.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01885.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01885.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01885.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01885.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01885.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01885.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01885.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01885.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2367.97
//
Query:       EHU01886.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01886.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01886.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01886.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01886.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01886.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01886.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01886.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01886.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01886.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01886.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01886.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01886.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01886.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01886.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01886.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01886.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01886.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2477.20
//
Query:       EHU01887.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.3   0.0    1.9e-22   79.6   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.1e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
      4e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
      6e-05   22.6   5.4    8.3e-05   22.1   0.5    3.0  3  HTH_33        Winged helix-turn helix
  ------ inclusion threshold ------
      0.029   14.9   0.2      0.061   13.8   0.2    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.052   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   8.3e-26   1.9e-22       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 8.3e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01887.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01887.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 316
                 *9.9*****************************998877765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01887.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01887.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01887.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHU01887.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01887.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01887.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHU01887.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01887.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01887.1 128 HASTIRRWL 136
                 789*****8 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   3.7e-08   8.3e-05       3      50 ..     108     155 ..     106     160 .. 0.91
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -2.4   0.0       1.8   3.9e+03      25      33 ..     314     322 ..     297     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.7e-08
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdp 50 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   + p
  EHU01887.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRAP 155
                 69***************************************9876655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU01887.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01887.1 314 SSMWQLLKK 322
                 789999986 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01887.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHU01887.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01887.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2498.88
//
Query:       EHU01888.1  [L=49]
Description: hypothetical protein CKS_0356 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.022   15.1   0.0    1.2  1  HTH_Tnp_1  Transposase


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.2e-06     0.022       5      23 ..       4      21 ..       1      33 [. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-06
   HTH_Tnp_1  5 rrwsdefKariVreslepg 23
                +r+++efK+++V+++  +g
  EHU01888.1  4 KRYPEEFKIEAVNLV-HQG 21
                8*************9.443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 397.75
//
Query:       EHU01889.1  [L=293]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-28   97.1   5.0    1.4e-27   96.5   5.0    1.3  1  LysR_substrate  LysR substrate binding domain
    1.2e-15   57.2   0.2    2.2e-15   56.3   0.2    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    2.6e-05   23.9   0.1    5.3e-05   22.9   0.1    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
      0.006   16.4   0.9      0.014   15.2   0.9    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   15.7   0.4      0.029   14.2   0.4    1.8  1  MarR_2          MarR family
      0.012   15.1   0.3      0.027   14.0   0.3    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.074   13.2   0.0       0.21   11.7   0.0    1.7  1  HTH_28          Helix-turn-helix domain
      0.097   12.1   0.0       0.27   10.7   0.0    1.8  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.13   12.5   0.1       0.29   11.4   0.1    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.18   11.7   0.6       0.55   10.1   0.3    2.0  2  HTH_5           Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   5.0   7.7e-31   1.4e-27       7     204 ..      95     289 ..      90     293 .] 0.93

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 7.7e-31
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsledL 101
                     + ri+a+++ a++ l+pl+  +r++ P+ +l +  + ++ ++++l++g++Dl++ +++  ++gl++rpL++e++v++ +++hp a +  +++e+L
      EHU01889.1  95 TWRIAATDYGAQTTLVPLMNTLRQEAPGTRLAILDMKPALIAQQLEKGTVDLVLHLREGVPEGLHVRPLFQERYVVAGRQGHP-ALHSAITAEAL 188
                     569*******************************************************************************8.5577999**** PP

                     CTSEEEEE.STTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCH CS
  LysR_substrate 102 adeplill.eegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrels 194
                       ++++++ ++g g+    + +l+++gl+++v+l+v ++  + +  +  + +al+p+ +++     ++l ++p p  ++p +el+++++++++++
      EHU01889.1 189 CALEHVVVsPDGGGFCGVTDSVLEARGLSRKVVLSVPHFLLMGSVLSTTDLVALMPERVAAM---MPGLMTVPPPM-AIPgFELVMLWHARSHRD 279
                     99888888356666*********************************************866...77788799999.9999************** PP

                     HHHHHHHHHH CS
  LysR_substrate 195 pavrafidfl 204
                        r++++ +
      EHU01889.1 280 LGHRWLRERV 289
                     ******9977 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.2   1.3e-18   2.2e-15       1      60 []       5      64 ..       5      64 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.3e-18
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++l ++  + +e s++rAAe+L+lsqp+vs+++ rL+ ++++pL++  ++g+r+T+++e
  EHU01889.1  5 LNLLITLNVLLQENSVSRAAERLNLSQPSVSARLERLRTLFNDPLLIPVSHGMRPTARAE 64
                688999**************************************************9975 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1     3e-08   5.3e-05       1      44 [.       7      49 ..       7      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3e-08
                ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                Ll TL + l++  ++s++A++L+++  +++ RL+r++ l++ +l
  EHU01889.1  7 LLITLNVLLQE-NSVSRAAERLNLSQPSVSARLERLRTLFNDPL 49
                67899999987.8*************************998665 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9   7.7e-06     0.014      19      42 .]      19      42 ..      14      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.7e-06
  HTH_AsnC-type 19 syaeLAervGlSestvlrRvrrLe 42
                   s+++ Aer++lS++ v +R++rL+
     EHU01889.1 19 SVSRAAERLNLSQPSVSARLERLR 42
                   67788******************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   1.6e-05     0.029      23      46 ..      19      42 ..       8      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                EHHHHHHHHTSSHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLv 46
                +v+  a+rl+ls+++vs +l+rL 
  EHU01889.1 19 SVSRAAERLNLSQPSVSARLERLR 42
                89********************95 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   1.5e-05     0.027      23      42 ..      23      42 ..      14      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
      HTH_24 23 LAerlglSpstvnrrlkrLe 42
                 Aerl+lS++ v++rl+rL 
  EHU01889.1 23 AAERLNLSQPSVSARLERLR 42
                59****************95 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.21       9      38 ..      14      43 ..      10      47 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      HTH_28  9 laaGhsvreaArelgisrrtvyrWikryee 38
                l++ +sv+ aA++l++s+ +v+  + r+++
  EHU01889.1 14 LLQENSVSRAAERLNLSQPSVSARLERLRT 43
                56788******************9999997 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.27      23      51 ..      14      41 ..      13      42 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
  HTH_Tnp_ISL3 23 lllesrsvkavArqlgvSwtTVwrildry 51
                  ll+e+ sv+ +A++l++S  +V  +l r+
    EHU01889.1 14 LLQEN-SVSRAAERLNLSQPSVSARLERL 41
                  799**.*****************999885 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00016      0.29      25      47 ..      20      42 ..      16      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                    HHHHHHHHTS-HHHHHHHHHHHH CS
  Fe_dep_repress 25 tkdlaerLnvspssVsemlkkLe 47
                    +++ aerLn s +sVs  l++L+
      EHU01889.1 20 VSRAAERLNLSQPSVSARLERLR 42
                    6788*****************97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00031      0.55      14      40 ..      16      42 ..       5      44 .. 0.83
   2 ?   -1.8   0.0       1.7     3e+03      23      37 ..     126     140 ..     123     141 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
                SSEEHHHHHHHHTS-HHHHHHHHHHHH CS
       HTH_5 14 gelcvcelaeelglsqstvShHLkkLr 40
                +e +v+  ae l+lsq+ vS  L +Lr
  EHU01889.1 16 QENSVSRAAERLNLSQPSVSARLERLR 42
                78889999****************998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
                 HHHTS-HHHHHHHHH CS
       HTH_5  23 eelglsqstvShHLk 37 
                 ++l++ ++ + ++L 
  EHU01889.1 126 AILDMKPALIAQQLE 140
                 467777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 2643.38
//
Query:       EHU01890.1  [L=262]
Description: NAD(P)H oxidoreductase / putative NADPH-quinone reductase / flavodoxin 2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-54  184.2   0.0    2.8e-54  183.8   0.0    1.1  1  Flavodoxin_2  Flavodoxin-like fold
    1.3e-13   50.9   0.0    3.2e-13   49.7   0.0    1.5  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   3.2e-58   2.8e-54       1     181 [.       1     202 [.       1     220 [. 0.89

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 3.2e-58
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC...........C..HHHHTT.C.HHHHHHHHHHHHCSSEE CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa...........k..layeek.p.adveseqiekllaadai 81 
                   m++Li++ahp+p +s+++ala+  v+ l++ g h+v+v dLya+ + +++t++d +            +  +a e + +  d+++eq ekll+ada+
    EHU01890.1   1 MNVLIVVAHPEP-RSLNGALARFSVSHLQQLG-HQVRVSDLYAMnWEARVTPADTQHrqhverftpslEstQAFEGGfQsEDIQQEQ-EKLLWADAV 94 
                   9***********.8******************.***********************9****9998876233444444977*******.********* PP

                   EEEEE-BTTB--HHHHHHHHHHS-TTTSC.E.......ETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHH.HHHHHHHTT-EE CS
  Flavodoxin_2  82 vlqfPlwwfgvPailKgwiDrvltagfaf.y.......teeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpp.lrgilgfiGikd 169
                   +lqfPlwwf++PailKgwiDrv+  gfa+         t  g+++++g L+gk+a+++vt+Gg +++y++rg +g ++d++l+p  +gil ++G+++
    EHU01890.1  95 ILQFPLWWFSMPAILKGWIDRVYACGFAYgVgvgehsdTHWGDRYGEGTLAGKRAMLVVTMGGWASHYGPRGING-HIDDILFPiQHGILFYPGFDV 190
                   *****************************99******75555566799**************************9.********************* PP

                   EEEEEEESCTCC CS
  Flavodoxin_2 170 vepvlvegvaga 181
                   ++p++v+ +  +
    EHU01890.1 191 LPPFTVYRTGRI 202
                   *******98533 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   3.6e-17   3.2e-13       1     120 [.       1     157 [.       1     166 [. 0.83

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.6e-17
                 -EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--........---HCHGHT...................CGGSHHHHHHHHHHHH-S CS
     FMN_red   1 mkilvisGSlrkgsntrklaewaaealkeagaevelidladlilpc......alcdkdlese...................gqtsddvaellekiaaad 74 
                 m++l++++ + ++s + +la++  ++l++ g +v + dl  ++                + +                   g +s+d+++  ek+ +ad
  EHU01890.1   1 MNVLIVVAHPEPRSLNGALARFSVSHLQQLGHQVRVSDLYAMNWEArvtpadT------Q-HrqhverftpslestqafegGFQSEDIQQEQEKLLWAD 92 
                 99****************************99998888766633322222220......1.12345555666666788999999*************** PP

                 CEEEEEEECTTCE-HHHHHHHHCHT-....................SSCHCCTT-EEEEEEE-SS CS
     FMN_red  75 aliivtPeYngsysgllKnalDrlsr...................trgkkelrgKpvalvavggg 120
                 a+i+  P ++ s++++lK  +Dr+ +                   ++g+  l+gK ++lv++ gg
  EHU01890.1  93 AVILQFPLWWFSMPAILKGWIDRVYAcgfaygvgvgehsdthwgdRYGEGTLAGKRAMLVVTMGG 157
                 ************************88**************9999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1948.07
//
Query:       EHU01891.1  [L=70]
Description: CspG family cold shock protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-33  113.7   0.7    2.8e-33  113.6   0.7    1.0  1  CSD       'Cold-shock' DNA-binding domain
    0.00027   20.6   0.4     0.0004   20.0   0.4    1.4  1  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
      0.047   13.7   0.1      0.069   13.1   0.1    1.3  1  CusF_Ec   Copper binding periplasmic protein CusF


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.7   4.7e-37   2.8e-33       2      65 ..       6      69 ..       5      70 .] 0.98

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 4.7e-37
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +GtVkwfna+kgfGFI+++dg+kdvFvH+saiqg++fr+L+egq+VeF+v++g kgp AanV++
  EHU01891.1  6 RGTVKWFNAEKGFGFISPQDGSKDVFVHFSAIQGTDFRTLDEGQQVEFTVENGAKGPAAANVVG 69
                7*************************************************************86 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.4   6.7e-08    0.0004       7      29 ..      15      37 ..       7      40 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.7e-08
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF++p +g++D+f++ + +
  EHU01891.1 15 EKGFGFISPQDGSKDVFVHFSAI 37
                79****************98766 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.2e-05     0.069      32      59 ..      34      61 ..      32      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
                EE--TTSEESS-STT-EEEEEEEEETTC CS
     CusF_Ec 32 FkvadpallaglkaGdkVrFefekrdgg 59
                F + +  ++++l +G++V+F++e+ ++g
  EHU01891.1 34 FSAIQGTDFRTLDEGQQVEFTVENGAKG 61
                6666778999**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 567.14
//
Query:       EHU01892.1  [L=37]
Description: hypothetical protein CKS_0360 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 345.09
//
Query:       EHU01893.1  [L=320]
Description: CheV family chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-29  100.4   0.1    9.5e-29   99.8   0.1    1.2  1  CheW          CheW-like domain
    4.8e-16   58.9   0.1    1.1e-15   57.8   0.1    1.6  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> CheW  CheW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.1   1.1e-32   9.5e-29       1     136 [.      21     163 ..      21     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 1.1e-32
                 EEEEEEETTEE.......EEEEGGGEEEEEECCT.BTTTTSSTTEEEEEEETTEEEEEEEHHHHCTSSSSTTSTCEEEEEEEETTEEEEEEESEEEEEE CS
        CheW   1 qlllfrlgeet.......yaiplakvreilevppitpipgapgavlgvinlrGevipvidLrellglgpeesrentrvivvelgnqvvGllVdevkgiq 92 
                 +lllfrlg+++       ++i+++k+rei+++ppit+  g+++ +lg+ ++rG+ ipvidL ++ g+ pe     + ++v+e+ +++++++V++v++i+
  EHU01893.1  21 ELLLFRLGSDQlkgkselFGINVFKLREIVPMPPITKAAGMRSPLLGMASIRGQFIPVIDLPAVAGCVPET--GLNLLLVTEYARNTQAFAVESVENIV 117
                 589********************************************************************..7************************* PP

                 EEECCGEETT.TSSTSSTCCCEEEEEECTTSE....EEEEE-CCCHHHH CS
        CheW  93 eivikqiepp.lglssdlagyisGatklgdgr....lvliLDveallrs 136
                 +++++q++ + +g   +  + i++++ l+d++    l+++LDve++l +
  EHU01893.1 118 RLNWSQVHTAeAG---IGGRNITSIACLDDDEqksnLAMVLDVEQILYD 163
                 **********544...555569******77745566**********975 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   1.2e-19   1.1e-15       2     108 ..     190     309 ..     189     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.2e-19
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.....HHHH..........ESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESST CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealell.....keek..........vdlillDinmpgmdGlellkeireed..pelpviiltahs 81 
                   ++++D++++r+ll+q l++ g+     +++g ea+e++     +  +          + l+l+D++mp+mdG++l+++i+++   +++pv+i ++ s
    EHU01893.1 190 IVAEDSKVARQLLEQGLKSMGI-PAVMCNTGLEAWEKIkaihqQ--AqsqgesihdkIALVLTDLEMPEMDGFTLTRNIKRDTtlRHIPVVIHSSLS 283
                   799*******************.7778**********9666541..15677888888**********************9988899*********** PP

                   SHHHHHHHHHCTESEEEESSG-HHHHH CS
  Response_reg  82 eeedavealkagaddflsKpfdpeeLl 108
                    +++  ++ k+gad++++K  + +eL 
    EHU01893.1 284 GSANEDHVRKVGADGYVAKF-ELNELS 309
                   *******************6.777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2844.66
//
Query:       EHU01894.1  [L=130]
Description: hypothetical protein CKS_0362 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-20   71.4   0.7    6.7e-20   71.1   0.7    1.1  1  BOF              Bacterial OB fold (BOF) protein
     0.0023   18.1   3.8      0.011   15.9   0.6    2.3  2  YDG              YDG domain
     0.0047   16.9   0.2       0.01   15.8   0.1    1.6  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.015   15.8   0.1       0.02   15.4   0.1    1.2  1  YflT             Heat induced stress protein YflT


Domain annotation for each model (and alignments):
>> BOF  Bacterial OB fold (BOF) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.7   1.5e-23   6.7e-20       4     102 ..      29     128 ..      21     129 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.5e-23
                 S---------------.-----HHHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGSTT----TTSEEEEEEEEEEETTEEEEEEEEE CS
         BOF   4 apsatqaiegGfrgan.akvttvkaAlsaaDdasvslrGnivkriddDeyvFrDasGeikveiddrvfnglevqpkdkvkiqGkvDkelekaeidvkki 101
                 +p++ ++++ G++g++ +++t +++ ++ + +  v+l+G+ivk++ d++y FrD++G++ +  ++++f+g++   +dkv+++Gkv  + +k+ + v +i
  EHU01894.1  29 TPPPQHKQDAGYKGSEdTGQTHIDQIRDFRQGGYVTLEGYIVKKVADNNYQFRDSTGTLTIIAPKKTFDGKTYSADDKVRVSGKVHGKGDKTTLHVMRI 127
                 6999**********99789999**************************************************************************998 PP

                 E CS
         BOF 102 e 102
                  
  EHU01894.1 128 D 128
                 5 PP

>> YDG  YDG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.024   1.1e+02      63      82 ..      63      82 ..      56      86 .. 0.84
   2 !   15.9   0.6   2.4e-06     0.011       9      45 ..      89     122 ..      81     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.024
         YDG 63 vtvsgltlsGadagNYtlaa 82
                vt+ g+ +++ + +NY++ +
  EHU01894.1 63 VTLEGYIVKKVADNNYQFRD 82
                999*************9844 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.4e-06
         YDG   9 gvtastKvYDGttaaaltgvsvtgvvsgvvagdtvtv 45 
                 ++ a++K++DG+t  a + v+v+g+v g  +gd+ t+
  EHU01894.1  89 II-APKKTFDGKTYSADDKVRVSGKVHG--KGDKTTL 122
                 34.489**********************..8899887 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.22   9.8e+02      44      61 ..      55      72 ..      50      81 .. 0.68
   2 !   15.8   0.1   2.3e-06      0.01      20      71 ..      77     125 ..      63     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.22
                     TTS-TTSEEEEEEEEEEC CS
  tRNA_anti-codon 44 enlkeGdvvrvtGrvkrr 61
                      +++ G +v  +G++ + 
       EHU01894.1 55 RDFRQGGYVTLEGYIVKK 72
                     567788888888888766 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.3e-06
                      EEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEE CS
  tRNA_anti-codon  20 fidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkve 71 
                      +++ rD tg++++++ +  +t   ++   +d vrv+G+v    ++  +l+v 
       EHU01894.1  77 NYQFRDSTGTLTIIAPK--KTFDGKTYSADDKVRVSGKVHGKGDK-TTLHVM 125
                      6789*************..********************999888.888875 PP

>> YflT  Heat induced stress protein YflT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   4.4e-06      0.02       5      56 ..      45      96 ..      42     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.4e-06
        YflT  5 eneeellsaieelkaeGyneddiyvvakdkdrlerlaentdaetettseegl 56
                ++ ++ +++i+++++ Gy + + y+v k  d+  ++++ t++ t+ + ++++
  EHU01894.1 45 DTGQTHIDQIRDFRQGGYVTLEGYIVKKVADNNYQFRDSTGTLTIIAPKKTF 96
                688999************************************9999877555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1053.88
//
Query:       EHU01895.1  [L=459]
Description: ATP-dependent RNA helicase, specific for 23S rRNA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-46  158.0   0.0    3.1e-46  157.4   0.0    1.4  1  DEAD           DEAD/DEAH box helicase
    3.6e-31  107.8   0.0    2.1e-28   98.9   0.0    2.5  2  Helicase_C     Helicase conserved C-terminal domain
    1.9e-22   79.0   0.1    5.2e-22   77.6   0.1    1.7  1  DbpA           DbpA RNA binding domain
    9.2e-08   32.3   0.0      2e-06   27.9   0.0    2.2  2  ResIII         Type III restriction enzyme, res subunit
    0.00019   20.8   0.0    0.00051   19.5   0.0    1.7  2  CMS1           U3-containing 90S pre-ribosomal complex subuni
  ------ inclusion threshold ------
      0.014   15.8   0.0        0.4   11.0   0.0    2.5  2  AAA_19         AAA domain
      0.097   12.5   0.0       0.33   10.8   0.0    1.9  2  Helicase_RecD  Helicase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.0   1.2e-49   3.1e-46       1     173 [.      27     191 ..      27     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 1.2e-49
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlliiggvaardqlskldngv 98 
                 t++Qa+++p+il g+dv ++a+TGsGKT+af i +l+++ +   + +++ali++PtreLa q+ n l+++  +++ +++l + gg++ + q++ l + +
  EHU01895.1  27 TPVQAASLPAILAGRDVRAQAKTGSGKTAAFGIGLLHHIDS--ARFQTQALILCPTRELADQVSNVLRQLARFTRnIKILTLCGGQPMSAQRDSLVHPP 123
                 89**********************************99955..66667************************955599999**************777* PP

                 SEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 +ivvgtpgr++d+l++++l+l+++r+lVlDEadr+l++gf+d++++i++++       ++ rq++++SAT+p+ +
  EHU01895.1 124 QIVVGTPGRILDHLKRETLQLDSLRTLVLDEADRMLEMGFRDDMETIIAAT-------PAARQTLLFSATWPDGI 191
                 ***************************************************.......67789*******99765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.005        13      11      58 ..      66     118 ..      59     128 .. 0.73
   2 !   98.9   0.0     8e-32   2.1e-28       1     111 []     227     336 ..     227     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.005
                 HHTTTTSEEEEEESSHHHHHH.HHHH..HHHT....TSTEEEESTTSTHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek.vkll..lekk....gikvavlhgelpqnereei 58 
                 ++ + + ++li ++t++ +++  ++l  l       +ik+++l g  p + ++++
  EHU01895.1  66 DSARFQTQALILCPTRELADQvSNVLrqL--ArftrNIKILTLCGGQPMSAQRDS 118
                 5667899**********888863444222..1346699*9999998887776655 PP

  == domain 2  score: 98.9 bits;  conditional E-value: 8e-32
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 +kl+ l+ ll +e++ + +++f+nt+++++++   l+ ++i++++lhg+l+q++re++l +f +g+ +vL+atdva+rG+di++++lV+n++l ++++ 
  EHU01895.1 227 EKLSLLISLL-SERQPSSCVVFCNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKSLSLVVNYQLAWDPEV 324
                 5899999**9.999***************98555567779*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                   +riGRt+Rag
  EHU01895.1 325 HLHRIGRTARAG 336
                 **********97 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.1     2e-25   5.2e-22       1      69 [.     385     453 ..     385     455 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 2e-25
                 EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS---- CS
        DbpA   1 rlfinvGkkdklrpgdivgaiakeaglsgkdIGkIdildkfSfvevpkekaeevlkalkkkkikGrkvr 69 
                 +++i++G+k k+rpgdi+ga+++eag ++++IGkId+ +++++v++++++a+ +l +lk++kikG++ r
  EHU01895.1 385 TICIDGGRKAKIRPGDILGALTGEAGYRADQIGKIDLTPTHAYVAIEAAQAKSALVKLKQGKIKGKTCR 453
                 689***************************************************************987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   7.8e-10     2e-06      29     169 ..      45     187 ..      26     189 .. 0.82
   2 ?    2.0   0.0     0.069   1.8e+02      21      47 ..     268     303 ..     214     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7.8e-10
                 EEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--........-SEEEEEHHHHHHTH...... CS
      ResIII  29 ikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkka.kekdstnkkilvttiqsldadseeeeee 124
                  ++ TG+GKT    + l  ++ +++ + ++l+l+p+++l +q  + +++++  +++  i +   g+  +a + +  +  +i+v t  ++  ++     +
  EHU01895.1  45 AQAKTGSGKTAAFgIGLLHHIDSARFQTQALILCPTRELADQVSNVLRQLARFTRNIkILTLCGGQPMSAqRDSLVHPPQIVVGTPGRILDHL-----K 138
                 5789*********9********************************999999998655333333333333334447899**************.....6 PP

                 ..HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS- CS
      ResIII 125 seellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATp 169
                 +e+l+ d+   ++ DEa r+ ++   + ++ i+ + ++    l ++AT 
  EHU01895.1 139 RETLQLDSLRTLVLDEADRMLEMgfrDDMETIIAATPAaRQTLLFSATW 187
                 77777788889999********977779999988886635669999996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.069
                 ...........TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII  21 s.........krdkrglikmaTGtGKTlvaaklier 47 
                 +         ++++r+li  a G+G  lva+ +++r
  EHU01895.1 268 AlplhgdleqRDRERVLIRFANGSGRVLVATDVAAR 303
                 05555555547788***********99999888776 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.2   8.1e+03      47      69 ..      72      94 ..      65      98 .. 0.77
   2 !   19.5   0.0     2e-07   0.00051     180     210 ..     125     155 ..     120     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.2
        CMS1 47 teavalqdpelLadylaqklkri 69
                t+a++l     Lad +++ l+++
  EHU01895.1 72 TQALILCPTRELADQVSNVLRQL 94
                67777778888999999888765 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 2e-07
        CMS1 180 iavGtpgRildLleeeslsvdeLkrivlDas 210
                 i vGtpgRild l+ e+l++d+L+ +vlD +
  EHU01895.1 125 IVVGTPGRILDHLKRETLQLDSLRTLVLDEA 155
                 789*************************964 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016       0.4      17      78 ..      47     161 ..      37     234 .. 0.64
   2 ?    2.3   0.0     0.076   1.9e+02      38      83 ..     237     280 ..     227     389 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
      AAA_19  17 aGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal...................................... 77 
                 a  G+GKT      + + ++  + +  + l++++t+  a+++++ l++l + ++ i  l+l                                      
  EHU01895.1  47 AKTGSGKTAAFGIGLLHHIDSARFQ-TQALILCPTRELADQVSNVLRQLARFTRNIKILTLcggqpmsaqrdslvhppqivvgtpgrildhlkretlql 144
                 668*******998888888888775.9*******************99998888888887777777777777777777777666666666666666666 PP

      AAA_19  78 ................l 78 
                                 +
  EHU01895.1 145 dslrtlvldeadrmleM 161
                 66666555555555552 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.076
      AAA_19  38 ggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddl 83 
                  +++p ++++ + t+r ++ ++ +l+a + +a  +H+   l+  d+
  EHU01895.1 237 SERQPSSCVVFCNTKRECDDIAAALNARDISALPLHGD--LEQRDR 280
                 4456899****************998888888888854..333333 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.33       3      99 ..      46     155 ..      45     175 .. 0.71
   2 ?   -2.5   0.0       1.5   3.8e+03      25      51 ..     339     365 ..     331     383 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  Helicase_RecD   3 tAdRGRGKSaalGlalaaliaegk..snilvtapskenvktlfeflakglealglke.............eekkkkaekaelrvr......kqrie 77 
                    +A+ G GK+aa G+ l + i +++  ++ l+  p++e ++++ + l++  + ++  +             +++  ++       +      ++ ++
     EHU01895.1  46 QAKTGSGKTAAFGIGLLHHIDSARfqTQALILCPTRELADQVSNVLRQLARFTRNIKiltlcggqpmsaqRDSLVHPP------QivvgtpGRILD 135
                    5899**************99999888999******9999888888866554433333666887755442222222222......133344477888 PP

  Helicase_RecD  78 yiapdellklkeqadllvvDEA 99 
                    +++ ++l+  +    +lv DEA
     EHU01895.1 136 HLKRETLQLDS--LRTLVLDEA 155
                    88888777754..578888888 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
  Helicase_RecD  25 gksnilvtapskenvktlfeflakgle 51 
                    g +  +v+a + + ++ l +fl+++l 
     EHU01895.1 339 GAAVSFVAADEMARAHALEDFLQQKLP 365
                    445556777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3896.94
//
Query:       EHU01896.1  [L=292]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-20   72.9   3.8    3.9e-20   72.1   3.8    1.3  1  LysR_substrate  LysR substrate binding domain
    2.6e-20   72.1   0.8      5e-20   71.2   0.8    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00011   21.7   0.2    0.00028   20.4   0.0    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00078   19.2   0.1     0.0021   17.9   0.1    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00092   19.1   0.8     0.0026   17.6   0.1    2.1  2  MarR_2          MarR family
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.066   13.3   0.1    2.2  2  HTH_20          Helix-turn-helix domain
      0.011   15.5   0.0      0.033   14.0   0.0    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain
      0.021   14.6   0.0       0.34   10.8   0.0    2.4  2  HTH_23          Homeodomain-like domain
      0.037   13.9   0.0       0.09   12.7   0.0    1.6  1  MarR            MarR family
       0.12   12.3   0.0       0.22   11.4   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   3.8   2.2e-23   3.9e-20       5     168 ..     100     248 ..      99     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.2e-23
                     CEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGG CS
  LysR_substrate   5 rgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsle 99 
                      g Lr+g+p+++a+   + lla+f +++P+ +l++ +g + el ++ ++ elD+ ++ +p  ++ l +r    epl+++ s+++p +++ pv   
      EHU01896.1 100 DGVLRLGVPEDFAAPT-AALLAQFSREHPHMRLDVMSGMQVELRRAWQREELDIMLIKQPYGERPLASR---PEPLLWLDSAAYPCFEHSPV--- 187
                     599*********8766.9*******************************************99999999...6*******************... PP

                     GGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTT CS
  LysR_substrate 100 dLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgr 168
                          pl+l++++  +r+++ + l+  g+++r+++++ sl al a+ a+GlG++llp+s   +  a+ r
      EHU01896.1 188 -----PLVLFPQQGLYREEICQTLDGLGRSWRIGYSSASLVALSAASAQGLGVTLLPASCRLP--AH-R 248
                     .....******************************************************9544..44.3 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.8   2.8e-23     5e-20       2      59 ..      16      73 ..      15      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.8e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +ql  fvav+e+ sftrAA++++lsq++vs+q++rLEe +g  L+ R+++++++Te+G
  EHU01896.1 16 QQLLSFVAVCETASFTRAADRVHLSQSTVSQQVRRLEEKVGKALLARSSHQVTVTEEG 73
                6899*****************************************************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.5e-07   0.00028      18      44 ..      28      54 ..      16      54 .. 0.84
   2 ?   -2.4   0.0       2.1   3.7e+03      20      27 ..     276     283 ..     270     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.5e-07
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeee 44
                 s +  A+r++lS+stv+++++rLee+
  EHU01896.1 28 ASFTRAADRVHLSQSTVSQQVRRLEEK 54
                677777*******************96 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
      HTH_24  20 qreLAerl 27 
                 qr+LAe+l
  EHU01896.1 276 QRQLAEAL 283
                 899**986 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.1e-06    0.0021      18      42 .]      28      52 ..      17      52 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
  HTH_AsnC-type 18 isyaeLAervGlSestvlrRvrrLe 42
                   +s+++ A+rv+lS+stv + vrrLe
     EHU01896.1 28 ASFTRAADRVHLSQSTVSQQVRRLE 52
                   89**********************8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.5e-06    0.0026      10      48 ..      18      54 ..      13      54 .. 0.82
   2 ?   -2.1   0.0       2.1   3.7e+03      16      30 ..     268     282 ..     263     283 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.5e-06
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaa 48
                +L +++  +    + +  a+r +ls+s+vs+ ++rL+++
  EHU01896.1 18 LLSFVAVCET--ASFTRAADRVHLSQSTVSQQVRRLEEK 54
                5555555555..688999******************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
                 CTTTSEEEHHHHHHH CS
      MarR_2  16 rrpgrdltvgelarr 30 
                 +r + d  +++la++
  EHU01896.1 268 CRQPDDALQRQLAEA 282
                 455556667777765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.7e-05     0.066      23      52 ..      26      56 ..      16      60 .. 0.88
   2 ?   -1.5   0.0       1.5   2.6e+03      23      36 ..     195     208 ..     191     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
                TTB-HHHHHHHHTS-HHHHHHHHHHHHH.CT CS
      HTH_20 23 egltaselaerldlskntlsyHLrvLee.ag 52
                e ++++  a+r+ ls++t+s+++r Lee +g
  EHU01896.1 26 ETASFTRAADRVHLSQSTVSQQVRRLEEkVG 56
                67899999*******************9666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 TTB-HHHHHHHHTS CS
      HTH_20  23 egltaselaerldl 36 
                 +gl  +e++++ld+
  EHU01896.1 195 QGLYREEICQTLDG 208
                 68888999999973 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.033      13      43 ..      28      58 ..      21      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS-- CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgld 43
                 + +++A++ h++  T+++ +rr+ee  g  
  EHU01896.1 28 ASFTRAADRVHLSQSTVSQQVRRLEEKVGKA 58
                5789**********************98865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.34      18      43 ..      28      53 ..      17      56 .. 0.85
   2 ?    0.9   0.0      0.24   4.3e+02      14      31 ..     193     211 ..     189     213 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkryre 43
                +s +++A++ + s++Tv++ ++r +e
  EHU01896.1 28 ASFTRAADRVHLSQSTVSQQVRRLEE 53
                57789**************9999754 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.24
      HTH_23  14 laeGlsvreIAreL.gvsr 31 
                  ++Gl ++eI++ L g  r
  EHU01896.1 193 PQQGLYREEICQTLdGLGR 211
                 567999******9955655 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     5e-05      0.09      24      44 ..      34      54 ..      23      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5e-05
                HHHHTS-HHHHHHHHHHHHHT CS
        MarR 24 akklgvskstvtrvldrLekk 44
                a+++++s+stv+ +++rLe+k
  EHU01896.1 34 ADRVHLSQSTVSQQVRRLEEK 54
                889****************97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.22      22      41 ..      34      53 ..      18      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_5 22 aeelglsqstvShHLkkLre 41
                a+ ++lsqstvS++ ++L+e
  EHU01896.1 34 ADRVHLSQSTVSQQVRRLEE 53
                67899*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2342.35
//
Query:       EHU01897.1  [L=387]
Description: cyanate transport protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-22   78.3  54.9      5e-22   78.3  54.9    1.7  2  MFS_1            Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3  54.9   2.8e-26     5e-22       7     352 ..      14     337 ..       7     338 .. 0.83
   2 !    2.7   2.5    0.0027        49     244     292 ..     324     372 ..     316     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.8e-26
       MFS_1   7 lsalarsi....lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 l++l++      ++p+l   l e+ g+s+ +++ll ++ +  +++ +l+ ++l++r+  r +l+ gl+l++l+ll  lf+ s    l+ + +  G+g g
  EHU01897.1  14 LAGLNMRPlmtsVSPLLD-QLRESIGLSALAASLLPAIPMMMMGAIALISAPLMQRVQLRGLLCGGLALLVLALLSRLFV-SQGeSLVGSTLPGGIGIG 110
                 455555541111455555.5699999*******************************66669999999999996666685.44557************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 ++  a+  +i++ fp+ + ++++gl+sa+   G  lg++l ++l+++l+W+ +    a+ +lla++l+++   ++ p+r+ +                +
  EHU01897.1 111 IVQMAMPGFIRQRFPQ-RSAMMTGLWSAALMGGGGLGAALTPWLSAHLSWQMALSSWAVPALLAILLWAWMPGVTSPARASV----------------V 192
                 ****************.*************************************************8777777777777777................3 PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglall 294
                   +l+++   w+l +++ l+  g+++ +++lp +   +lg+s    g ll+  ++  ++++ga++++l++r  dr   r+ lll+l++ l + lgl+++
  EHU01897.1 193 MPSLWRNARAWMLALSFGLVNGGYAICVAWLPDF-YHQLGWSaqagGSLLG--VMITCQVAGAMVFPLLTRGPDR---RPLLLLTLIFQLSGMLGLLFA 285
                 4588999999*9*********************9.*******888553333..4777778887777777777777...********************* PP

       MFS_1 295 avtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn.tagslggalg 352
                 +++   ++l+++  ++G+glg +fp++l+la d++   ++ +a gl   +++++g +++
  EHU01897.1 286 PLY--HPWLWVG--MAGVGLGGAFPLALVLALDHL---AHPQAGGLLVaFMQGIGFIIA 337
                 ***..6666654..4677777779**********9...455666666668888888886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.0027
       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                 ll++++ +++++++  + ++ag+l+  +g   ++++   +++++++gl 
  EHU01897.1 324 LLVAFMQGIGFIIAGSMPFIAGQLHALTGDFSTIWWLQCGVTIGLVGLN 372
                 6778888888888888899999999888888888888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3111.71
//
Query:       EHU01898.1  [L=548]
Description: L-lactate permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.9e-210  700.1  41.3   2.2e-210  699.9  41.3    1.0  1  Lactate_perm  L-lactate permease


Domain annotation for each model (and alignments):
>> Lactate_perm  L-lactate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  699.9  41.3  1.2e-214  2.2e-210       2     522 .]      17     539 ..      16     539 .. 0.97

  Alignments for each domain:
  == domain 1  score: 699.9 bits;  conditional E-value: 1.2e-214
  Lactate_perm   2 salval.vPIlllllalavlklkgykaallslavsviiallvykmpvekvlaavlkgalsgllpialviiaavflyklsvksgafeiirksilsisp 97 
                   s+l+al +P+l+++    +lk+kg +aa +++++++ +all+y+mp +++la++ +g+l+gl+pia++i+aavf+yk+sv +g+f+iir silsi+p
    EHU01898.1  17 SSLIALlLPVLFFF----KLKMKGHQAATITVMLALGVALLLYHMPWQQALASAAYGFLYGLWPIAWIIVAAVFVYKISVRTGQFDIIRASILSITP 109
                   67777615666665....78***************************************************************************** PP

  Lactate_perm  98 drriqvlligfafgaflEGaaGfGtpvAIsaalLvglGfkPlyaaglcLIantapvafGavGiPitagagatklsaleisslvgiilvlisllipll 194
                   d+r+q+l++gf+fgaflEGaaGfG+pvAI+aalLvglGf+PlyaaglcLI+ntapvafGa+GiPi+++ ++t+l+++ i+++ g++l+++++++ ++
    EHU01898.1 110 DQRLQMLIVGFSFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIVNTAPVAFGAMGIPIIVAGQVTGLDSFAIGQMAGRQLPFLTVIVLFW 206
                   ************************************************************************************************* PP

  Lactate_perm 195 lvilldgvkdiketfpavlvsglsfaiaqflisnvlGpelpsilgalvslvilalflkafqpkeifrfagkeeskeksel.....kaakilkAlsPf 286
                   +++++dg++++ket+pav+v+g sfaiaqfl+sn+lGp lp+i+++l slv l+lfl+ +qp++ifrf+++e++++++       ++ ++++A++Pf
    EHU01898.1 207 IMAIMDGWRGVKETWPAVMVAGGSFAIAQFLSSNFLGPALPDIISSLASLVSLTLFLRVWQPVRIFRFSDAENQTATQPArqqtyTTKQVIRAWMPF 303
                   ********************************************************************99887776665556677899********* PP

  Lactate_perm 287 vllvavivltsipllkalfeeggllatkllsleleelsklilkikpiveeatalevvfkfkllsspgtiillaavlsiavlklsskdalkvlketlk 383
                   ++l+a+++l+sip +kalf++gg+la +++s+ ++ l+  i +i+p+v++  a +++fk++lls++gt+il+aa++ i++lk++++ a+ +++etlk
    EHU01898.1 304 LFLTATVTLWSIPPFKALFAKGGALANWVMSIPVPGLHDWITRIPPVVAQPSAWPAIFKLDLLSATGTAILIAAIVAIIFLKMKPRAAVGTFVETLK 400
                   ************************************************************************************************* PP

  Lactate_perm 384 elklpilaiilvlalanlmnvsGlsktlalalaetGsaftlfspllGalGvfltGSdtvsNllFgslQletaeqiglsevlllaantvGgvvgkmis 480
                    l lpi++i++vla+a ++n+sGls+tlalala+tG+aft+fsp+lG+lGvfltGSdt+sN+lF++lQ++ta+qig+s+ ll+aant+Ggv+gkmis
    EHU01898.1 401 SLMLPIYSIGMVLAFAFISNYSGLSATLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATTAQQIGVSDILLVAANTTGGVTGKMIS 497
                   ************************************************************************************************* PP

  Lactate_perm 481 pqsiaiacaavglvgkEsdllrktviysliyliivgvvalll 522
                   pqsiaiacaavglvgkEsdl+r+tv++sli++ +vgv+++l+
    EHU01898.1 498 PQSIAIACAAVGLVGKESDLFRFTVKHSLIFTGLVGVMTTLQ 539
                   ***************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4196.82
//
Query:       EHU01899.1  [L=256]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-25   87.7  11.1    1.6e-24   86.7  11.1    1.5  1  FCD        FCD domain
    7.6e-18   63.9   0.2    1.7e-17   62.8   0.2    1.6  1  GntR       Bacterial regulatory proteins, gntR family
     0.0011   19.3   0.0     0.0034   17.7   0.0    1.8  2  Rrf2       Transcriptional regulator
     0.0061   16.1   0.2      0.012   15.2   0.2    1.5  1  HTH_24     Winged helix-turn-helix DNA-binding
     0.0073   16.3   0.1      0.014   15.4   0.1    1.5  1  HTH_Crp_2  Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.026   14.5   0.1    1.6  1  HTH_11     HTH domain
      0.051   13.5   0.2       0.13   12.1   0.2    1.7  1  MarR_2     MarR family
      0.052   13.6   0.1       0.11   12.5   0.1    1.5  1  HTH_29     Winged helix-turn helix
       0.17   11.5   0.0       0.35   10.4   0.0    1.5  1  HTH_CodY   CodY helix-turn-helix domain
       0.17   11.8   0.0       0.31   11.0   0.0    1.4  1  TrmB       Sugar-specific transcriptional regulator TrmB
        0.2   11.8   3.9        1.2    9.3   0.1    3.1  3  HTH_20     Helix-turn-helix domain
        0.2   11.4   0.0       0.31   10.8   0.0    1.3  1  DUF2538    Protein of unknown function (DUF2538)


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7  11.1     1e-27   1.6e-24       1     123 [.      95     221 ..      95     223 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1e-27
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr....lrrlals....spe 91 
                 d++e+R+++E++ a  aa rat+ d ++l+ +++a  ++ +++d+  + +ad++FH a+aea++n vl ++++ l + l+          +     +p 
  EHU01899.1  95 DILEARHAIEGSTAWHAALRATESDKERLRYAFDATLAMKESDDPHLAGQADLRFHLAIAEASHNIVLLQTMRGLFDLLHSsmlhS----RKlmyiRPV 189
                 79******************************************************************************854322....334677*** PP

         FCD  92 rleeslaeHraildAirardadaAraamrrHl 123
                   ++  ++Hra+ldAi+ +da+aAr a+ +Hl
  EHU01899.1 190 IFDRLTDQHRAMLDAILVGDAEAARSAAMDHL 221
                 *******************************8 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.2   1.2e-20   1.7e-17       8      62 ..      10      64 ..       5      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.2e-20
                HHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR  8 rLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                rL++ I++ +l+pG++LP+er+Laa++gVsr+++ReA+++L + g++++r+g Gt
  EHU01899.1 10 RLKHYIRDHQLEPGMRLPAERQLAAALGVSRSSLREAIQQLISSGVLMSRRGDGT 64
                799***************************************************9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.3e-06    0.0034      29      72 ..      30      71 ..      17      82 .. 0.87
   2 ?   -2.2   0.0       3.6   5.4e+03       5      22 ..     121     138 ..     119     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.3e-06
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCC CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppe 72
                +++a+  ++s+s l+  +++L  +g++ s+rG   G +L +p e
  EHU01899.1 30 RQLAAALGVSRSSLREAIQQLISSGVLMSRRGD--GTWLRQPQE 71
                79*******************************..999988776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHHHSST CS
        Rrf2   5 skteyalhallyLakeee 22 
                 ++++ya+ a l +++ ++
  EHU01899.1 121 ERLRYAFDATLAMKESDD 138
                 688999999998887665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   7.9e-06     0.012      21      47 ..      30      56 ..      29      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.9e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                r+LA +lg+S+s +++ +++L+++G++
  EHU01899.1 30 RQLAAALGVSRSSLREAIQQLISSGVL 56
                79***********************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   9.3e-06     0.014      24      54 ..      29      60 ..      10      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.3e-06
                HHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 24 qeelAsmlGltretvsrilseLkreglis.rg 54
                 ++lA+ lG++r+++  ++++L   g++  r+
  EHU01899.1 29 ERQLAAALGVSRSSLREAIQQLISSGVLMsRR 60
                479************************98543 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.7e-05     0.026      20      51 ..      31      61 ..      29      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgvpIesepg 51
                +LA  L+vSr+  r  I++L ++g  + s++g
  EHU01899.1 31 QLAAALGVSRSSLREAIQQLISSG-VLMSRRG 61
                79*********************9.6666666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     9e-05      0.13      25      56 ..      30      61 ..      15      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9e-05
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                ++la++lg+s+s++  +++ L + G +  r+g
  EHU01899.1 30 RQLAAALGVSRSSLREAIQQLISSGVLMSRRG 61
                69***********************9987776 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.4e-05      0.11      16      62 ..      30      71 ..      28      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.4e-05
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlseeqe 62
                +q+A++lg+sr++ + ++      G+  l++rr  g + + l + qe
  EHU01899.1 30 RQLAAALGVSRSSLREAIQQLISSGV--LMSRR--GDGTW-LRQPQE 71
                79***********************5..99866..66666.667665 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00024      0.35       9      38 ..      31      60 ..      24      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
    HTH_CodY  9 kiaDriGitrsvivnaLrkLesaGiiesrs 38
                ++a  +G+ rs +  a+++L s+G++ sr 
  EHU01899.1 31 QLAAALGVSRSSLREAIQQLISSGVLMSRR 60
                578899**********************95 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.31      26      58 ..      30      62 ..      28      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgr 58
                +++a +lgv+rs+  e++++L++ G+ + ++g 
  EHU01899.1 30 RQLAAALGVSRSSLREAIQQLISSGVLMSRRGD 62
                68999*********************9998875 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00079       1.2      29      58 ..      31      60 ..      28      62 .. 0.93
   2 ?    1.2   0.1      0.25   3.8e+02      20      49 ..     135     164 ..     113     171 .. 0.82
   3 ?    0.3   0.0      0.52   7.7e+02       7      41 ..     194     231 ..     189     233 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00079
                HHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 29 elaerldlskntlsyHLrvLeeagLvevvr 58
                +la++l++s+++l+  +++L + g + ++r
  EHU01899.1 31 QLAAALGVSRSSLREAIQQLISSGVLMSRR 60
                8************************99987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
                 STCTTB-HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_20  20 araegltaselaerldlskntlsyHLrvLe 49 
                  +++++ a++ + r+ l+ +++s+++  L+
  EHU01899.1 135 ESDDPHLAGQADLRFHLAIAEASHNIVLLQ 164
                 578999999999999999999999987775 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.52
                 HS-HHHHHHHHHHSTCTTB-HHHHHHHHT...S-HHHH CS
      HTH_20   7 LahPvRrrilraLaraegltaselaerld...lskntl 41 
                 L++  R+++ + L +++++  s+ ++ l+   ++++tl
  EHU01899.1 194 LTDQHRAMLDAILVGDAEAARSAAMDHLGfvhTTMKTL 231
                 55566666666668888888889999886555888877 PP

>> DUF2538  Protein of unknown function (DUF2538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.31       9      69 ..     163     224 ..     156     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
     DUF2538   9 irhidkvfdrleqqiieskdrahlrkelf.yvndehrenyealliyykeseenplvdgacyi 69 
                 ++ + ++fd l + +++s+    +r  +f  + d+hr   +a+l+   e+     +d   ++
  EHU01899.1 163 LQTMRGLFDLLHSSMLHSRKLMYIRPVIFdRLTDQHRAMLDAILVGDAEAARSAAMDHLGFV 224
                 577899********************9994589************99999999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1956.53
//
Query:       EHU01900.1  [L=395]
Description: L-lactate dehydrogenase, FMN-linked [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-123  412.6   0.0   1.4e-123  412.4   0.0    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    6.4e-06   25.4   2.0    1.8e-05   24.0   0.7    2.1  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00032   20.2   1.7    0.00047   19.6   1.7    1.2  1  NMO           Nitronate monooxygenase
     0.0024   17.1   0.0     0.0074   15.5   0.0    1.8  1  IGPS          Indole-3-glycerol phosphate synthase
     0.0041   16.3   0.4     0.0059   15.8   0.4    1.2  1  Glu_synthase  Conserved region in glutamate synthase
     0.0078   15.5   0.4        1.2    8.4   0.5    2.3  2  ThiG          Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
      0.066   12.7   0.1       0.56    9.6   0.1    2.1  2  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.4   0.0  5.4e-127  1.4e-123       1     346 [.      13     375 ..      13     377 .. 0.97

  Alignments for each domain:
  == domain 1  score: 412.4 bits;  conditional E-value: 5.4e-127
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 A++ lp++ f+y++gga  e+tlr+n a++++++lr+r+lr++s  +l+ttl+ ++ls+Pv +aPvgl ++++++ge+++araaa  gipf+lstv+ +
  EHU01900.1  13 AQRILPPFLFHYLDGGAYAEHTLRRNVADLSDVALRQRILRNMSALSLETTLFSETLSMPVALAPVGLCGMYARRGEVQAARAAAGKGIPFTLSTVSVC 111
                 7899*********************************************************************************************** PP

                 -HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH............. CS
      FMN_dh 100 sleevaaaaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal............. 185
                 ++eeva +   p+wfqlyv +dr ++++ l+ra+aag+++lv+tvD+p++g R rd ++g+s + +  lr+++q++++p+wa ++              
  EHU01900.1 112 PIEEVAPQISRPMWFQLYVLRDRGFMRNALERAKAAGCTTLVFTVDMPTPGARYRDAHSGMSGKHA-ALRRYWQAVTHPRWALDVGlqgrphdlgnist 209
                 *******9888************************************************9987766.899***************************** PP

                 .......THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS CS
      FMN_dh 186 .....kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgG 279
                      +  ++   +++k +dps++w+d++w+re +++p+v+KG+l++eda+ av+ G+dgivvSNHGGRqldg+ ++ ++Lp+i++av+g++++l+D+G
  EHU01900.1 210 ylgkpTGLEDYIGWLAKNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDMTILADSG 308
                 **8666666666*************************************************************************************** PP

                 --SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGE CS
      FMN_dh 280 irrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsll 346
                 ir+G Dv++ +alGAd vllGR+f+y+la+ G++Gve++l ++++e++ +m+l+G+k +a++++++l
  EHU01900.1 309 IRNGLDVVRMIALGADTVLLGRAFVYALATHGQRGVEHLLTLIENEMKVAMTLTGAKCIADINQTSL 375
                 ***************************************************************9876 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.7   6.9e-09   1.8e-05     153     239 ..     253     332 ..     231     343 .. 0.69
   2 ?   -0.2   0.0      0.15     4e+02     299     328 ..     344     373 ..     335     382 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 6.9e-09
                 E-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 153 vataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 + + e a++ ++ gad++ v    G     r + gv  + + A+ ++a+a+ k +++++aD Gi++  d+v+ +a+Gad+v+lG+ +
  EHU01900.1 253 ILDPEDARDAVRFGADGIVVSNHGG-----RQLDGV-LSSARALPAIADAV-KGDMTILADSGIRNGLDVVRMIALGADTVLLGRAF 332
                 5556666666666666666654444.....556665.34455555555544.4689****************************988 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 299 vkevveqlvgglrsgmgylGaktieelkek 328
                 v+++++ + ++++ +m+ +Gak i++++++
  EHU01900.1 344 VEHLLTLIENEMKVAMTLTGAKCIADINQT 373
                 667777788889999999999999988764 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.7   1.9e-07   0.00047     146     229 ..     256     336 ..     242     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.9e-07
         NMO 146 vkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltk 229
                  ++ar + + GaD ++v  ++ GG q +      +  + +p ++dav+  + ++A  Gi ++ +v  ++alGA  v +g +f+ + 
  EHU01900.1 256 PEDARDAVRFGADGIVV--SNHGGRQLDGV---LSSARALPAIADAVKgdMTILADSGIRNGLDVVRMIALGADTVLLGRAFVYAL 336
                 5789999**********..58899987333...57999*********999********************************8764 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.9e-06    0.0074     166     242 ..     254     333 ..     246     340 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.9e-06
                 SSHHHHHHHHHTT-SEEEEESEETTTTEE-CHHHHHH...CHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHH CS
        IGPS 166 hdeeeleralklgakiiGvNnRnLktlevdlntteeL...aklvpkdvllvaeSGiktredveklkeegvnafLvGeslm 242
                  d e+   a+++ga+ i v n   ++l+  l   + L   a+ v+ d+++ a SGi++  dv ++ + g++++L G +++
  EHU01900.1 254 LDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALpaiADAVKGDMTILADSGIRNGLDVVRMIALGADTVLLGRAFV 333
                 56788888999999988898866666665555555542117788899*****************************9986 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   2.3e-06    0.0059     270     310 ..     296     336 ..     266     342 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-06
                   T-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHT CS
  Glu_synthase 270 glrdrvsliadGglktgadvvkalalGAdavgigtaalial 310
                    ++  +++ ad g++ g dvv  +alGAd+v +g+a + al
    EHU01900.1 296 AVKGDMTILADSGIRNGLDVVRMIALGADTVLLGRAFVYAL 336
                   56778899**************************9988776 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0051        13     167     204 ..     237     273 ..     232     292 .. 0.84
   2 !    8.4   0.5   0.00046       1.2     165     207 ..     288     332 ..     280     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0051
                 HHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 l+ i+e  + P+++  Gi  p+da  a+ +Gad++++ 
  EHU01900.1 237 LEWIREFWDGPMVI-KGILDPEDARDAVRFGADGIVVS 273
                 67778888889988.59******************986 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00046
                 HHHHHHHHH-..SS-BEEES---SHHHHHHHHHTT-SEEEESHHH CS
        ThiG 165 ealkiiieea..kvPvivDAGigspsdaaqamelGadavllntav 207
                  al  i + +  ++ ++ D Gi++  d++  + lGad+vll  a 
  EHU01900.1 288 RALPAIADAVkgDMTILADSGIRNGLDVVRMIALGADTVLLGRAF 332
                 5666777776668999************************98876 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11   2.8e+02      81     103 ..     252     274 ..     235     292 .. 0.81
   2 ?    9.6   0.1   0.00022      0.56      65     106 ..     293     333 ..     279     341 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
                   SSSSHHHHHHHHHCT-SEEEESH CS
  His_biosynth  81 GIrsledveelleagadkviigt 103
                   GI + ed+++++++gad ++++ 
    EHU01900.1 252 GILDPEDARDAVRFGADGIVVSN 274
                   8999*************999875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00022
                   HHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHH CS
  His_biosynth  65 veeiaeevfipvqvGGGIrsledveelleagadkviigtaav 106
                   ++  ++  ++++  ++GIr+  dv +++ +gad v +g a v
    EHU01900.1 293 IADAVKG-DMTILADSGIRNGLDVVRMIALGADTVLLGRAFV 333
                   3333333.4777778888888888888888888888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2922.52
//
Query:       EHU01901.1  [L=142]
Description: osmotically inducible, stress-inducible membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-20   73.5   0.0    1.9e-20   73.2   0.0    1.1  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.1e-24   1.9e-20       3      98 ..      42     137 ..      39     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.1e-24
                 XSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCE..EEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSE CS
        OsmC   3 gsgpsPeelllaalasCfaitlravakkkgikledl..eveveaerdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkve 98 
                 ++g++Peel+ aa+a+Cf+++l+ ++ ++g k e++  +++v+++++ eg+  it++ l+ ++++pg+d+ ++++++++ka++ Cpvs++l+++++++
  EHU01901.1  42 QKGTNPEELIGAAHAACFSMALSLMLGNAGHKPESIdtSADVSLDKKGEGFA-ITKVALTSTISLPGIDN-DTFDEIINKAKAGCPVSQVLNAEITLD 137
                 569*********************************7777777799999999.****************6.********************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1233.44
//
Query:       EHU01902.1  [L=38]
Description: hypothetical protein CKS_0370 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.69    9.9   3.8       0.83    9.6   3.8    1.1  1  DUF4006   Family of unknown function (DUF4006)


Domain annotation for each model (and alignments):
>> DUF4006  Family of unknown function (DUF4006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.8   4.6e-05      0.83      15      34 ..      12      31 ..      11      34 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 4.6e-05
     DUF4006 15 tGmliavvLLLsilavLtvl 34
                +G l  vvLLL ++ +L ++
  EHU01902.1 12 LGVLLMVVLLLEVICFLLTA 31
                599*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 322.55
//
Query:       EHU01903.1  [L=76]
Description: hypothetical protein CKS_0371 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 689.04
//
Query:       EHU01904.1  [L=56]
Description: hypothetical protein CKS_0372 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 516.45
//
Query:       EHU01905.1  [L=102]
Description: PTS system cellobiose-specific IIB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-26   91.8   0.6    3.6e-26   91.7   0.6    1.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.6     2e-30   3.6e-26       1      89 [.       3      94 ..       3      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2e-30
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEE.GGGHHHHHHT-SEEEEEESSGG..CTHHHHTT...SEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagv.eleaeeiaddaDlvllapqvrv..kdlarfag...kpvavinikdalgimdgekvlk 89
                kill+C+aGm+tS+++ +k+ekaa+++g+++e++a   e   ++iad +D++ll+pq+++   d+++ a+   kpvavin +d +g+m+gek+l+
  EHU01905.1  3 KILLCCAAGMSTSMVV-QKMEKAAQQQGLDVEIKAVGiEEFRDDIAD-YDCCLLGPQIKYklADFQPIAQqysKPVAVINSMD-YGMMNGEKILS 94
                8***************.***********8888887774444666666.************9988888888**99*********.********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 929.55
//
Query:       EHU01906.1  [L=411]
Description: PTS system cellobiose-specific IIC component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-58  198.6  35.0    1.7e-58  198.2  35.0    1.1  1  PTS_EIIC  Phosphotransferase system, EIIC
  ------ inclusion threshold ------
      0.016   15.4   0.0      0.025   14.7   0.0    1.1  1  End3      Actin cytoskeleton-regulatory complex protein END3


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2  35.0   1.8e-62   1.7e-58       1     324 []      33     352 ..      33     352 .. 0.92

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 1.8e-62
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiaygl..akggkgvaglagligllafnllaais 97 
                 +dgf++ +p+li+g+++l+++  p+s+d +++  +++  + +  +e +++++n+++++++l +a +iay+l  +++ +g++  a+ ++l+af ++aa +
  EHU01906.1  33 RDGFIASMPFLIVGSFMLLFAHPPFSADSSWAFAQWWLGMVKAHEEQIMMPYNMTMGIMALYIASAIAYNLanSYKMNGFM--AASLSLMAFLVVAAPQ 129
                 79******************************99***********************************************..9999999999855554 PP

    PTS_EIIC  98 vlllaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg..l 193
                 +           + +++   +++ g+f+ai+v+l+a++l+ +++k ni +kLPe++p+ + ++f  +i+++++++ ++++ l++   + ++l  +    
  EHU01906.1 130 S-----------GKTLPVGSLGGEGIFTAILVALFATELMHVLQKyNIGFKLPEQVPPKIRQSFDLLIPIITIFITLFPLSLWVQAQFGMLL-PQAimA 216
                 3...........3578888****************************************************888887777777755554444.444452 PP

    PTS_EIIC 194 l....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskqkk 286
                 +    + +s+sl +vl++ +l++ll++ G+H+a+i++ ++++++ ++   nqq+++ag++ +h++ ++f++  +++Gg+g t +l++ ++  + s++++
  EHU01906.1 217 IfspiISASDSLPAVLVAVLLCHLLWFAGIHGAVIVGGILQAFWLTNLGLNQQALNAGEPISHVFIEPFWQffIVIGGSGSTMGLVLLYLRSQ-SAHLR 314
                 25888**********************************************************************************776666.***** PP

    PTS_EIIC 287 llgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 ++g+++++p +f+I+ep++Fg p+v+n++lfip++la+
  EHU01906.1 315 SIGKLSVVPSMFNINEPVIFGSPVVMNPILFIPFILAP 352
                 ************************************98 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.8e-06     0.025       8      34 ..     157     183 ..     154     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-06
        End3   8 flHiLnqReeGiriPrevPasLratfe 34 
                 ++H+L++ + G+++P++vP+ +r++f+
  EHU01906.1 157 LMHVLQKYNIGFKLPEQVPPKIRQSFD 183
                 69***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3114.65
//
Query:       EHU01907.1  [L=82]
Description: putative DNA-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-24   85.1   0.0    2.7e-24   85.0   0.0    1.0  1  HTH_35    Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
       0.17   12.1   0.0       0.25   11.5   0.0    1.4  1  DUF3234   Protein of unknown function (DUF3234)


Domain annotation for each model (and alignments):
>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0     3e-28   2.7e-24       1      66 [.      10      75 ..      10      82 .] 0.96

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 3e-28
      HTH_35  1 dWhpadIiAaLrkrgttLaalsreaglssstlsnaltrpwpkgEalIAeaLgvppeeiwPsRYekd 66
                dWhp+dI++ L+krg +L++lsr++g+++ +l+++l++p+    +++A+aLgv+pe iwPsRY+ +
  EHU01907.1 10 DWHPEDIKSGLHKRGLSLSELSRRNGYAPGSLKSVLRTPCKPYQRIVADALGVAPEIIWPSRYQAE 75
                9**************************************************************987 PP

>> DUF3234  Protein of unknown function (DUF3234)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.25       6      43 ..      44      81 ..      35      82 .] 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                EEEST...T-BEEEEETTEEEEEEBSSHHHHHHHHHTS CS
     DUF3234  6 vledpnvaGehlvlealGqrlsliwtsreeaeaflekt 43
                vl  p  + + +v +alG     iw sr +ae+++++ 
  EHU01907.1 44 VLRTPCKPYQRIVADALGVAPEIIWPSRYQAESYIQRA 81
                78889999999************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 684.15
//
Query:       EHU01908.1  [L=678]
Description: putative phage transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-14   54.1   0.0    3.3e-14   52.6   0.0    1.9  1  Mu-transpos_C  Mu transposase, C-terminal
    6.1e-12   45.8   0.0    1.4e-11   44.6   0.0    1.6  1  rve            Integrase core domain
    1.8e-06   28.2   0.1    1.3e-05   25.4   0.0    2.4  2  HTH_Tnp_Mu_1   Mu DNA-binding domain
  ------ inclusion threshold ------
      0.024   14.4   0.0        2.1    8.2   0.0    2.9  2  rve_3          Integrase core domain


Domain annotation for each model (and alignments):
>> Mu-transpos_C  Mu transposase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   7.4e-18   3.3e-14       2      61 .]     533     592 ..     532     592 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 7.4e-18
                    HTSEEBEEEE--TTTS--EEEEEE-SHHHHSS-SEEEEEE-GGGTTEEEEEETTS-EEEE CS
  Mu-transpos_C   2 llllpretrtvqrdGirlngnrYwspeLaglvgkkVvvryDPrdlsrvyVydldgrfice 61 
                    +++lp+etrt  r++i+l  n Y++ eL++   +kV v+++P d ++vy+++ldg f+c+
     EHU01908.1 533 DMFLPEETRTAARGWIQLGTNNYFARELIEVDQEKVRVAFNPLDAKEVYIRRLDGTFVCT 592
                    69*********************************************************7 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.2e-15   1.4e-11      22     115 ..     316     420 ..     295     423 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 3.2e-15
         rve  22 g.........kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytsk....afrefladlgirvsftrpgrpqdnGk 107
                           ++ l+ v+d  +r+i+++ ls +++  +v+++ ++ ++++g+  p+ v+sDng   +++    a++ +  ++gi++ +  pg+pq +G+
  EHU01908.1 316 VlhpiynrpfTPELTLVIDGRTRVIVGWSLSLSENRFAVAEAYRHGMEKYGK--PLFVYSDNGGGEKNNmldaAVTGIFPRMGITHMTGIPGNPQARGI 412
                 03334444778999**************************************..*********9888779999************************** PP

         rve 108 vErfhrtl 115
                 +Er ++ +
  EHU01908.1 413 IERLNGVV 420
                 ****9976 PP

>> HTH_Tnp_Mu_1  Mu DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.9e-09   1.3e-05       1     128 [.       6     138 ..       6     150 .. 0.64
   2 ?   -1.3   0.0       0.5   2.2e+03      42      81 ..     532     567 ..     520     580 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.9e-09
                   HTSTTS-S...SHHHHHHHHHHCT--E....EEESSSTTTTEEEE-GGGS-HHHHHHHHHHHCT...XXXXXXXXXXXXXXXXXXXXXXXXX..... CS
  HTH_Tnp_Mu_1   1 kelaglPGlPktaagvtkkAkkegWkk....rkreGvkgGkAvEYdvnslPketraalllrlGl...lgaslgekevaselvetkderlial..... 85 
                   kel g+PGlP t++g++   ++    +    r+reG    kA+EY++  lP  +r+ +  rl +       +ge  v+  +v++   +l  +     
    EHU01908.1   6 KELVGIPGLPVTEKGMREALNRYTAGNesllRRREG---TKAFEYHIDCLPDAAREVVKQRLLQrviESDDAGEVAVSAGVVAKPRLELRLMqdcpa 99 
                   6889***********987766644433111155565...79***************99554443664555788888888888876544433211111 PP

                   XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  HTH_Tnp_Mu_1  86 lskle....pdeqrkaaellskaGlkallpvvvaedkllealgiskk 128
                   l+k e    +++qrk+a+        a+  +v+  d+l +  gi ++
    EHU01908.1 100 LAKREagklTEQQRKVAD--------ARCVLVMEVDRLRSLEGIKVT 138
                   334445555555555555........666666666666666666555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
                   -GGGS-HHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXXX CS
  HTH_Tnp_Mu_1  42 dvnslPketraalllrlGllgaslgekevaselvetkder 81 
                   + + lP+etr a    +G ++   ++   a+el+e  +e+
    EHU01908.1 532 HDMFLPEETRTAA---RGWIQLGTNN-YFARELIEVDQEK 567
                   66789*****998...6665554444.4566776665555 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00046       2.1       2      24 ..     396     418 ..     395     425 .. 0.91
   2 ?    2.8   0.0     0.022     1e+02      40      62 ..     476     498 ..     462     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00046
       rve_3   2 gielsyiapgkPqqNglvEsfng 24 
                 gi++  + pg Pq  g +E++ng
  EHU01908.1 396 GITHMTGIPGNPQARGIIERLNG 418
                 89999999**************8 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.022
       rve_3  40 aearekleawredYNteRPHssL 62 
                 + +  ++++ ++ YN+ + Hs L
  EHU01908.1 476 QALTVAIQDEIDAYNRSHEHSEL 498
                 5667789999***********88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4985.96
//
Query:       EHU01909.1  [L=308]
Description: phage transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   64.4   0.2    3.4e-17   63.0   0.0    1.8  2  AAA_22           AAA domain
    6.7e-06   26.0   0.1    1.2e-05   25.1   0.1    1.4  1  AAA_30           AAA domain
    2.5e-05   24.2   0.2    6.3e-05   23.0   0.2    1.7  1  HTH_3            Helix-turn-helix
    0.00032   20.2   0.0      0.002   17.6   0.0    2.1  1  TniB             Bacterial TniB protein
     0.0013   19.1   0.1     0.0053   17.1   0.0    2.1  2  HTH_31           Helix-turn-helix domain
     0.0016   18.8   0.1     0.0051   17.2   0.1    2.1  1  AAA_16           AAA ATPase domain
     0.0086   16.1   0.3      0.022   14.8   0.0    1.8  2  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.021   14.6   0.0    1.4  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.015   14.8   0.0      0.072   12.7   0.0    2.2  2  HTH_24           Winged helix-turn-helix DNA-binding
      0.016   15.0   0.2       0.04   13.7   0.2    1.7  1  LacI             Bacterial regulatory proteins, lacI family
      0.045   14.2   0.0       0.21   12.0   0.0    2.0  2  AAA              ATPase family associated with various cellul
      0.065   12.0   0.0      0.087   11.6   0.0    1.2  1  Adeno_IVa2       Adenovirus IVa2 protein
      0.075   13.5   0.1       0.23   12.0   0.0    1.8  2  HTH_40           Helix-turn-helix domain
      0.095   12.4   0.0       0.16   11.6   0.0    1.4  1  AAA_24           AAA domain
       0.11   12.1   0.1       0.33   10.5   0.1    1.8  1  GerE             Bacterial regulatory proteins, luxR family


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   2.8e-20   3.4e-17       3     133 ..      86     199 ..      81     204 .. 0.95
   2 ?   -2.3   0.0       4.1   4.9e+03     106     110 ..     236     240 ..     207     279 .. 0.59

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 2.8e-20
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 +++ i+v++G +G+GK+++lr+++ +          ++  +++++  + + k ll+el+ +l +++ +  ++ +el e++ +al+ ++   +++iDEa+
  EHU01909.1  86 SDCDIGVIYGAAGMGKSMVLREYALR----------DSAAILIEADPGYTAKVLLQELCIKLRVKKTT--GTIHELSERCVEALKGTGW--IVLIDEAE 170
                 57889********************9..........79999**********************98888..*******************..******** PP

      AAA_22 102 hlrseealeeLrsllnlsrkgvqliLvGtpel 133
                  l +++ale  r++++  r  + l+L+G+p l
  EHU01909.1 171 LL-PHRALEVMRRIQD--RARCGLVLAGMPRL 199
                 **.*************..************76 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
      AAA_22 106 eeale 110
                  ++l+
  EHU01909.1 236 TDILN 240
                 22222 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   9.9e-09   1.2e-05       8     123 ..      79     195 ..      72     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 9.9e-09
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgi......eastiakllkrlkgrarlepgtllivDEagmv 100
                 +++++++++ d + v+ G+AG GK+++l++++    a    +++ A  g  AkvL +el i      ++ ti++l +r  + a   +g ++++DEa ++
  EHU01909.1  79 EVIDNIHSDCD-IGVIYGAAGMGKSMVLREYALRDSA---AILIEADPGYTAKVLLQELCIklrvkkTTGTIHELSERCVE-ALKGTGWIVLIDEAELL 172
                 66777887777.99**************998765554...5999**********998888767667789999999977775.444566999******** PP

      AAA_30 101 dtkqlaallkaaekagakvilvG 123
                   + l+ + ++ ++a   ++l+G
  EHU01909.1 173 PHRALEVMRRIQDRARCGLVLAG 195
                 98877655555555556666665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2   5.3e-08   6.3e-05       3      33 ..       9      41 ..       7      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.3e-08
                HHHHHTTHHHHHHHHHHTSSHHHHHHHHTT..S CS
       HTH_3  3 elRkqlglsqeeLAeklGvsrstisriEnG..e 33
                + ++  g++q+++A+k+ +s +t+s++ +G  +
  EHU01909.1  9 QFMERSGYTQKQVAAKSKLSTATVSQYLSGsyK 41
                567899************************544 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06     0.002      39     166 ..      92     200 ..      68     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-06
        TniB  39 llvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsar 137
                 +++G   +GK+m+++++a ++++           ++++a p  + k l +++  +l+++ k++ ++++l +++++ l+ ++  v +iDE + l      
  EHU01909.1  92 VIYGAAGMGKSMVLREYALRDSA----------AILIEADPGYTAKVLLQELCIKLRVK-KTTGTIHELSERCVEALKGTGWIV-LIDEAELLP----- 173
                 699**************987655..........479***********************.79*****************99865.58**98877..... PP

        TniB 138 kqreflnalksLgnelkipivlvGteeal 166
                   +++l+++++++++ ++ +vl+G  ++l
  EHU01909.1 174 --HRALEVMRRIQDRARCGLVLAGMPRLL 200
                 ..78899*****************98765 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.4e-06    0.0053       8      38 ..       9      39 ..       6      53 .. 0.92
   2 ?   -2.8   0.0       6.9   8.2e+03       4      14 ..     255     265 ..     254     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.4e-06
      HTH_31  8 alReraGLsqeevAerlgvsestlsrlEqGr 38
                ++ er+G +q++vA+ + +s +t+s++ +G 
  EHU01909.1  9 QFMERSGYTQKQVAAKSKLSTATVSQYLSGS 39
                6789************************996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.9
      HTH_31   4 alLralReraG 14 
                 + L+a+R+++G
  EHU01909.1 255 DVLQAFRKESG 265
                 67999999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.3e-06    0.0051      23     132 ..      87     189 ..      72     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.3e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..............a 107
                 ++ + +++G++G+GKs ++re +  l+++ +i+++++             a++l + el+ +l  ++++    + +e++ eal+              +
  EHU01909.1  87 DCDIGVIYGAAGMGKSMVLREYA--LRDSAAILIEADPGYT---------AKVLLQ-ELCIKLRVKKTTGTIHELSERCVEALKgtgwivlideaellP 173
                 457889**************999..4555455555555555.........666655.777777767677777777777777777666655443333330 PP

      AAA_16 108 vpelagaeasrllellkrllallsr 132
                          +r le+++r+ +++++
  EHU01909.1 174 ---------HRALEVMRRIQDRARC 189
                 .........4444444444444433 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.022       4      93 ..      93     188 ..      91     195 .. 0.78
   2 ?   -3.4   0.1       7.6   9.1e+03      79      90 ..     233     244 ..     223     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 EE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...............--------.G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik......ngttslvdsplvraar.egeilvlDEveraesevlnsLlslleerr 93 
                 + G+ G gKs++ +++a +  +    +    ++t++ l++++ ik       gt        v+a + +g+i+++DE e ++  +l+++ ++ ++ r
  EHU01909.1  93 IYGAAGMGKSMVLREYALR-DSAAILIEADPGYTAKVLLQELCIKlrvkktTGTIHELSERCVEALKgTGWIVLIDEAELLPHRALEVMRRIQDRAR 188
                 78*************9744.667777889999999999999999998877533333333345557779***********999999999877766655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.6
                 HHHHHHHHHHHH CS
       AAA_5  79 sevlnsLlslle 90 
                 s+ +++L+++l+
  EHU01909.1 233 SDFTDILNNILN 244
                 788899999998 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.7e-05     0.021       2      81 ..      92     179 ..      91     194 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts...liltvnrptaelltegk...pklpnlsvrtvdsflmalvks..tkgkililDEylllhaGyill 81 
                      v+ G++G GKS ++r+ +  +     + +++  ++ +  +    +   ++++ t+ ++ + +v+    +g i+++DE+ ll+   +++
       EHU01909.1  92 VIYGAAGMGKSMVLREYALRDsaaILIEADPGYTAKVLLQElciKLRVKKTTGTIHELSERCVEAlkGTGWIVLIDEAELLPHRALEV 179
                      899*************998888963333333333222222257988888999999999999999888889***********9877766 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.1e-05     0.072      14      38 ..      12      36 ..       7      37 .. 0.88
   2 ?   -2.7   0.0       3.7   4.5e+03      12      26 ..     118     132 ..     117     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.1e-05
      HTH_24 14 knprisqreLAerlglSpstvnrrl 38
                + ++ +q+++A ++ lS +tv+++l
  EHU01909.1 12 ERSGYTQKQVAAKSKLSTATVSQYL 36
                66789******************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
      HTH_24  12 LqknprisqreLAer 26 
                 ++++p+ + + L ++
  EHU01909.1 118 IEADPGYTAKVLLQE 132
                 889999999988766 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   3.3e-05      0.04       3      24 ..      19      42 ..      17      53 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-05
                HHHHHHCTS-HHHHHHHCTTS..S CS
        LacI  3 kDVArlAGVSkaTVSrvLnnk..e 24
                k VA +++ S+aTVS++L+++  +
  EHU01909.1 19 KQVAAKSKLSTATVSQYLSGSykG 42
                78*****************99543 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.21       3      73 ..      93     175 ..      92     188 .. 0.67
   2 ?   -2.2   0.0       4.3   5.2e+03      32      55 ..     254     277 ..     249     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS..........STTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHH CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgsellsk..........yvgesekkirelfkeakeka..kpsilfiDEidalaks 73 
                 +yG  G+GK+++ +  a   ++ +l    +  + k           v+++   i+el +++ e    +  i++iDE++ l  +
  EHU01909.1  93 IYGAAGMGKSMVLREYALRDSAAILIEADPGYTAKvllqelciklRVKKTTGTIHELSERCVEALkgTGWIVLIDEAELLPHR 175
                 79************9998854443322223333233444444444699999999999999755556555********988443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
                 TTCSSSSTTHHHHHHHHHHHHHHH CS
         AAA  32 sellskyvgesekkirelfkeake 55 
                 s++l+ + +es  + r +fk a++
  EHU01909.1 254 SDVLQAFRKESGGNYRRMFKLARS 277
                 456677889999999999999875 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05     0.087      82     106 ..      83     107 ..      23     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
  Adeno_IVa2  82 nyglqPviGviyGPtGsGksqllrn 106
                 n+  +  iGviyG +G Gks +lr+
  EHU01909.1  83 NIHSDCDIGVIYGAAGMGKSMVLRE 107
                 6677788****************97 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.23      10      39 ..      13      42 ..       8      85 .. 0.80
   2 ?   -2.9   0.0       7.9   9.5e+03      45      63 ..     226     244 ..     219     268 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
      HTH_40 10 eeglsieeIAkerglkesTIegHLaeliee 39
                ++g++ +++A++ +l+++T+ ++L   ++ 
  EHU01909.1 13 RSGYTQKQVAAKSKLSTATVSQYLSGSYKG 42
                79**********************876665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.9
      HTH_40  45 lerlvseeeekeIeeaiek 63 
                 +++l +e+++  I + i +
  EHU01909.1 226 MKQLSEESDFTDILNNILN 244
                 4555555666666665555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.16       6      42 ..      92     131 ..      89     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      AAA_24   6 liyGpsgiGKTtlakel...gpkplfidtekGlksldadk 42 
                 +iyG +g+GK+++++e+      +++i  + G+ +    +
  EHU01909.1  92 VIYGAAGMGKSMVLREYalrDSAAILIEADPGYTAKVLLQ 131
                 8****************99888888888888887765555 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00027      0.33      16      39 ..      14      37 ..      11      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00027
                TTS-HHHHHHHHTS-HHHHHHHHH CS
        GerE 16 eGksnkeIAeelniSekTVkvhks 39
                +G++ k++A++  +S+ TV+ ++s
  EHU01909.1 14 SGYTQKQVAAKSKLSTATVSQYLS 37
                699*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.47
# Mc/sec: 1950.04
//
Query:       EHU01910.1  [L=41]
Description: hypothetical protein CKS_0378 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 307.16
//
Query:       EHU01911.1  [L=164]
Description: hypothetical protein CKS_0379 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-05   22.9   0.8    0.00012   22.0   0.8    1.5  1  Mu-transpos_C  Mu transposase, C-terminal


Domain annotation for each model (and alignments):
>> Mu-transpos_C  Mu transposase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.8   6.5e-09   0.00012      11      61 .]       4      51 ..       1      51 [. 0.86

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.5e-09
                   E--TTTS--EEEEEE-SHHHHSS-SEEEEEE-GGGTTEEEEEETTS-EEEE CS
  Mu-transpos_C 11 tvqrdGirlngnrYwspeLaglvgkkVvvryDPrdlsrvyVydldgrfice 61
                    v+r+ +++n+n+Y+sp L+ l g  V+v       +++ Vy  dg+f ce
     EHU01911.1  4 QVKRGFVEVNNNFYFSPKLCCLEG--VYVEVSVWRDDEIDVYV-DGKFYCE 51
                   567777**************9999..8888899999******9.9997676 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1306.04
//
Query:       EHU01912.1  [L=76]
Description: hypothetical protein CKS_0380 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 637.50
//
Query:       EHU01913.1  [L=76]
Description: hypothetical protein CKS_0381 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 670.31
//
Query:       EHU01914.1  [L=68]
Description: hypothetical protein CKS_0382 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 634.79
//
Query:       EHU01915.1  [L=195]
Description: hypothetical protein CKS_0383 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-70  235.9   0.5    3.2e-70  235.7   0.5    1.0  1  DUF3164   Protein of unknown function (DUF3164)


Domain annotation for each model (and alignments):
>> DUF3164  Protein of unknown function (DUF3164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.7   0.5   1.8e-74   3.2e-70       1     179 [.      14     192 ..      14     194 .. 0.99

  Alignments for each domain:
  == domain 1  score: 235.7 bits;  conditional E-value: 1.8e-74
     DUF3164   1 ylkdakGalvpeakikpidklrdelVkeivkkakklqkqlaefkaelfedvsafvdlsaeeygvkvggkkGnvtlvsfDgkykvqravqeriefderlq 99 
                 y+kd+kG+lvp+++++++d ++d +V++ v++ak++++++a+fk+++f+d++a+++l +e++g+k gg kGnvt+++fDg++++++avq+r++f+++lq
  EHU01915.1  14 YMKDRKGRLVPVSQVSAYDLEMDAFVRTRVAEAKEKSQMMAQFKQASFSDCYAWMALASEKHGRKPGGVKGNVTFSTFDGSQQIKIAVQDRLTFGPELQ 112
                 9************************************************************************************************** PP

     DUF3164 100 aAKelideclkewsegadeeikalvedaFqvdkeGkintkriLsLrrldiedekWkkAmeaisdsvqvvgsksyirlyer 179
                 +AK++ideclk wsega+e++ +l++daF+vdkeGk+nt ri+sLr+ldi+d+ W++Amea++ ++ v  +++yi+++e+
  EHU01915.1 113 IAKDMIDECLKAWSEGANEKLLTLITDAFDVDKEGKLNTGRIISLRQLDIQDDLWQQAMEALNKALVVSVTSTYINFREQ 192
                 *****************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1848.23
//
Query:       EHU01916.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01916.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01916.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01916.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01916.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 868.52
//
Query:       EHU01917.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01917.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 963.58
//
Query:       EHU01918.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-98  328.8   3.4    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.029   13.6   0.7      0.056   12.6   0.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.038   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.041   13.4   2.5      0.044   13.4   0.9    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.7   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.28   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.49   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.77    8.9   2.7        1.2    8.4   2.7    1.2  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        2.5    7.6   7.4        5.8    6.4   7.4    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.1    7.2   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.12     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  326.1   0.0  2.2e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU01918.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.2e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01918.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01918.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01918.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01918.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01918.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.2e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.2e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU01918.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.7   6.6e-05     0.056      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01918.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.025        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU01918.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU01918.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01918.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   5.1e-05     0.044     144     232 ..      10     100 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU01918.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01918.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00012       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01918.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2     0.001      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.16   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU01918.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01918.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00032      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00032
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU01918.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00036      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01918.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00053      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00053
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01918.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3     0.001      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.28   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU01918.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.28
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU01918.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00066      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.7   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU01918.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU01918.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01918.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01918.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0012      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU01918.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00092      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00092
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01918.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0014       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01918.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU01918.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU01918.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU01918.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.4    0.0068       5.8      71     153 ..      14      98 ..       2     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0068
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU01918.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1      0.02        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.25   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.02
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01918.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01918.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1466  (0.081767); expected 358.6 (0.02)
Passed bias filter:                     1052  (0.0586759); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 3933.47
//
Query:       EHU01919.1  [L=67]
Description: hypothetical protein CKS_0388 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 538.10
//
Query:       EHU01920.1  [L=104]
Description: hypothetical protein CKS_0389 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 935.20
//
Query:       EHU01921.1  [L=27]
Description: hypothetical protein CKS_0390 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (27 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 227.37
//
Query:       EHU01922.1  [L=82]
Description: hypothetical protein CKS_0391 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   18.1   0.3     0.0015   18.0   0.3    1.0  1  RSN1_7TM   Calcium-dependent channel, 7TM region, putative ph
  ------ inclusion threshold ------
      0.017   15.1   0.5      0.019   14.9   0.5    1.1  1  Colicin_V  Colicin V production protein


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   1.6e-07    0.0015       8      82 ..       2      81 ..       1      82 [] 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-07
    RSN1_7TM  8 llvlliifwiipvafv.gllsnletltkvlpflkkilelskkll...svvtgllPtll.lslllallpiilrllsklqGa 82
                +l++lii +i pv ++ g+ ++  +     + l++i++ +++ +   s+v gll+ ++  +ll+ ++p+i+r++ +++G 
  EHU01922.1  2 VLAILIIRYIHPVGYIvGTAADSAYHLFSGENLGWISNAPEWGSdsaSFVVGLLSVIIiAWLLSRFIPFIFRRIRSVTGS 81
                6899*********988788888888888899999998888876543489******9761678899*********999985 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   2.1e-06     0.019      25      88 ..      10      74 ..       6      82 .] 0.66

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-06
   Colicin_V 25 vlsllgwvvafvvasllypslaellae....lilspalaaiiaflllfllvllivsllgallsklvsk 88
                 ++ +g++v++++ s ++   +e+l+         ++    ++f++ +l v++i++ll++++  ++++
  EHU01922.1 10 YIHPVGYIVGTAADSAYHLFSGENLGWisnaP---EWGSDSASFVVGLLSVIIIAWLLSRFIPFIFRR 74
                57789**********************74441...444555556666666666666665555554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 667.88
//
Query:       EHU01923.1  [L=132]
Description: hypothetical protein CKS_0392 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-24   85.2   0.3    7.5e-24   85.0   0.3    1.1  1  DUF1018   Protein of unknown function (DUF1018)


Domain annotation for each model (and alignments):
>> DUF1018  Protein of unknown function (DUF1018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.3   4.2e-28   7.5e-24       1     119 []      18     128 ..      18     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 4.2e-28
     DUF1018   1 ldDetYralLerltgktSakdLtdaelakvlaeLkalgfkpkskkkakrkkparkatsaqlrkiealWielakagvvrdrseaaLnafvkrqtgvdr.l 98 
                 +dD+tYr++L+rltg++Sa+d+t+ael+kv+  +++ gf p++   +++  + +++++a+l+kieal  e       ++r+  +++++v++++g ++ +
  EHU01923.1  18 WDDDTYRDVLARLTGRRSARDCTEAELEKVVTYMRTVGFTPSASYGRRP--RVAMDRKAMLAKIEALLAE-------ANRQWGYFDGIVEQMLGEKKpV 107
                 8**************************************9998876654..445*************944.......45677***********87777* PP

     DUF1018  99 ewlddeqaskvieaLkkwkkR 119
                 ewl+d+q +kv+++L  ++kR
  EHU01923.1 108 EWLNDDQVRKVMQMLIVDAKR 128
                 ***************888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1063.06
//
Query:       EHU01924.1  [L=148]
Description: hypothetical protein CKS_0393 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   37.9   0.0    6.7e-08   32.5   0.0    2.1  2  Mor       Mor transcription activator family


Domain annotation for each model (and alignments):
>> Mor  Mor transcription activator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0     0.002        36      27      62 ..      19      54 ..       4      61 .. 0.77
   2 !   32.5   0.0   3.8e-12   6.7e-08      28      99 ..      58     139 ..      47     147 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.002
                ...TTSHHHHHHHHHHHH-SS------SHHHHHHHH CS
         Mor 27 alaeqigeevadalaahwGGqqiyiPrgvklelelr 62
                ++   ig ++ ++l + +GG  + i +gv+ + e+r
  EHU01924.1 19 QIVGVIGFDATQKLIERFGGARFPIGKGVRRDGERR 54
                455678999*************99999987666555 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 3.8e-12
                 ..TTSHHHHHHHHHHHH-SS-.-----SHHHHHHHHHHHHHHH--.........SS-HHHHHHHHT--HHHHHHHHHHHHH- CS
         Mor  28 laeqigeevadalaahwGGqq.iyiPrgvklelelrdreifnefk.........GnnvaeLarkYglseqwiykiikrvrke 99 
                 l e ige+ a++l +h+GG++ ++iPr+  + +e r+r  +++ +           ++ ++a kYg   +w ++ i+r rk+
  EHU01924.1  58 LREVIGEDRAQELVKHFGGEDtLVIPRCAAALREWRNRCFYADMDdmvnsgeslRMALTHVAPKYGFGNTWAWELINRRRKH 139
                 55889**************75389**************************77766678899*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1113.69
//
Query:       EHU01925.1  [L=153]
Description: phage lysozyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-19   68.4   0.0      8e-19   68.1   0.0    1.1  1  Phage_lysozyme  Phage lysozyme


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   4.5e-23     8e-19       1     107 [.      32     141 ..      32     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 4.5e-23
                     CEEEETT....BCSSSCCTTHH-EHHHHHHHHHHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCHHHHHHHGG CS
  Phage_lysozyme   1 ywtigiG....ekgkdvsphkritkeeaagryekdlktaerkikqyikvkdfepnqqdalvslafnvGkgGkrkastllralnagdwkkacsair 91 
                     +wtig+G    ++g dv + ++i++++a++++++ + ++e+ + +++ v ++++nq+dalvs+++n G+  + + stll++lnagd ++a+ ++ 
      EHU01925.1  32 IWTIGWGwtrpVDGVDVHRWMTISQDKADALFAEGVVDYEQAVCRLVTV-ALTQNQFDALVSFTYNLGPV-ALERSTLLTKLNAGDCAGAAAEFD 124
                     7***********************************************9.*******************7.************************ PP

                     GSSEETCCC.HHHHHHH CS
  Phage_lysozyme  92 kslkaGkel.nglknRr 107
                     ++++ Gk   +gl +Rr
      EHU01925.1 125 RWVYIGKSPsDGLIRRR 141
                     **999976516677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1139.43
//
Query:       EHU01926.1  [L=68]
Description: hypothetical protein CKS_0395 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.2   2.6      0.022   15.0   2.6    1.1  1  TrbC      TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.6   1.2e-06     0.022      57      97 ..      16      57 ..      12      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-06
        TrbC 57 iatiaiivaGimlafgrls.wrtlvmvviGiviifgAssivs 97
                i+t +ii++G ml+f+ ++ + +++  v++++++++++++ +
  EHU01926.1 16 IVTSGIICTGQMLFFHWMRdISWAGSFVLALFVFVAGAALGT 57
                7899**************9****************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 563.12
//
Query:       EHU01927.1  [L=98]
Description: hypothetical protein CKS_0396 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-05   23.0   0.1    0.00011   22.4   0.1    1.4  1  DUF2644   Protein of unknown function (DUF2644)
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.025   14.4   0.0    1.1  1  DUF1282   Protein of unknown function (DUF1282)
      0.048   13.6   0.2      0.058   13.3   0.2    1.1  1  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1
      0.079   13.3   0.7       0.12   12.7   0.7    1.2  1  UPF0016   Uncharacterized protein family UPF0016
      0.084   13.0   0.2       0.11   12.6   0.2    1.2  1  DUF962    Protein of unknown function (DUF962)
       0.44   10.3   3.9        2.8    7.7   0.6    2.4  2  DUF3789   Protein of unknown function (DUF3789)


Domain annotation for each model (and alignments):
>> DUF2644  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   3.6e-08   0.00011       1      44 [.      16      59 ..      16      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.6e-08
     DUF2644  1 eLltnkdGrlSTTafiQFfgalllagiLvyavyldrpyveelfm 44
                eL++n +G+lSTT     f+ ++ +++++ ++y +++ v+ l +
  EHU01927.1 16 ELVSNRQGQLSTTDATTLFALIISSAVVLMCAYWNHAPVDALAV 59
                89*******************************99988876654 PP

>> DUF1282  Protein of unknown function (DUF1282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.4e-06     0.025     101     148 ..      28      75 ..       2      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.4e-06
     DUF1282 101 faayalvplflgglalglsllllvalvslllllyvvvLlylGvptlmn 148
                 + a +l+ l+++  ++++ +++ +a v +l++   +++  +Gv++ + 
  EHU01927.1  28 TDATTLFALIISSAVVLMCAYWNHAPVDALAVYVGAWVAHAGVQKYHD 75 
                 56889999************************************9986 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     2e-05     0.058      29      81 ..      30      80 ..      16      84 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
     SLATT_1 29 lllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyeelaaaY 81
                ++++++ +++ +++++     ++ ++v++la+ ++a +a++ +++y++  + +
  EHU01927.1 30 ATTLFALIISSAVVLM--CAYWNHAPVDALAVYVGAWVAHAGVQKYHDSRTDH 80
                3333333333333333..34588899********************9988776 PP

>> UPF0016  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7     4e-05      0.12      14      56 ..      29      67 ..      26      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4e-05
     UPF0016 14 DkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslak 56
                D T l a++ ++      V++ a++ +a +++l+v++G+++a+
  EHU01927.1 29 DATTLFALIISSAV----VLMCAYWNHAPVDALAVYVGAWVAH 67
                88999999999988....***********************75 PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   3.7e-05      0.11      30      67 ..      35      72 ..      26      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.7e-05
      DUF962 30 lilltvlllllraklklllalfvvgyifafvGHfvfEk 67
                +++++ +++l++a ++ + +  ++ y++a+v+H+ + k
  EHU01927.1 35 ALIISSAVVLMCAYWNHAPVDALAVYVGAWVAHAGVQK 72
                45677788888999*******************98877 PP

>> DUF3789  Protein of unknown function (DUF3789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.6   0.00094       2.8      14      22 ..       3      11 ..       1      12 [. 0.80
   2 ?    3.4   0.1     0.021        63      16      20 ..      42      46 ..      39      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00094
     DUF3789 14 iGVvlMCLl 22
                 GV+lMC l
  EHU01927.1  3 RGVMLMCFL 11
                5******76 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
     DUF3789 16 VvlMC 20
                VvlMC
  EHU01927.1 42 VVLMC 46
                9**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 860.37
//
Query:       EHU01928.1  [L=153]
Description: hypothetical protein CKS_0397 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1349.08
//
Query:       EHU01929.1  [L=63]
Description: hypothetical protein CKS_0398 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 583.50
//
Query:       EHU01930.1  [L=86]
Description: hypothetical protein CKS_0399 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   14.2   0.5      0.011   14.0   0.5    1.0  1  EzrA       Septation ring formation regulator, EzrA
  ------ inclusion threshold ------
      0.018   15.2   0.9      0.022   14.9   0.9    1.1  1  MetOD2     Metanogen output domain 2
       0.03   14.8   0.7      0.052   14.0   0.7    1.3  1  ZapB       Cell division protein ZapB
       0.12   12.3   0.2        0.2   11.5   0.2    1.4  1  zf-CCCH_6  Chromatin remodeling factor Mit1 C-terminal Zn fin
       0.13   11.1   0.1       0.15   11.0   0.1    1.0  1  LMBR1      LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.5     3e-06     0.011     315     368 ..      25      78 ..      18      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-06
                 HHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS CS
        EzrA 315 lehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekle 368
                 ++ l + ++el++e  r+++ Y+L+ + +  ++++ + l+e+++++e+ +e+++
  EHU01930.1  25 VKSLHTAIDELRKENIRMRELYQLKSDAVRDQEQIMAMLSEIKQSMERTTERID 78 
                 677888999****************************************99986 PP

>> MetOD2  Metanogen output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.9   6.1e-06     0.022      28      80 ..      28      80 ..      23      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.1e-06
      MetOD2 28 LaksvevnkrllslLsqtydidddkaevseeieaalknlekkleaqeerlkqi 80
                L++ ++  ++    ++++y++  d ++ +e+i a+l+++++++e   er+ ++
  EHU01930.1 28 LHTAIDELRKENIRMRELYQLKSDAVRDQEQIMAMLSEIKQSMERTTERIDRL 80
                7788888888877899*********************************9886 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   1.4e-05     0.052      16      67 ..      28      82 ..      23      83 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
        ZapB 16 aidtitlLqmeieeLkeen...eelkeenreleeeneqlkeereawqerlkkLLg 67
                + + i++L++e+ +++e     +   + ++++ + +++ k+  e ++er++ L+g
  EHU01930.1 28 LHTAIDELRKENIRMRELYqlkSDAVRDQEQIMAMLSEIKQSMERTTERIDRLIG 82
                44456666666655544441114444445555599999***************97 PP

>> zf-CCCH_6  Chromatin remodeling factor Mit1 C-terminal Zn finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   5.7e-05       0.2      21      40 ..      54      73 ..      51      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
                SSHHHHHHHHHHHHT--S-H CS
   zf-CCCH_6 21 ksetqvrrmleaLkeStEpr 40
                ++++q+ +ml+++k+S E  
  EHU01930.1 54 RDQEQIMAMLSEIKQSMERT 73
                799**************975 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.1e-05      0.15     181     241 ..      14      74 ..       9      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
       LMBR1 181 yGlvelPrslwreiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesd 241
                 +Glv+  +++w +  ++  +el+k +++  +l++ k++a r+ e+++  ++++++s++++ 
  EHU01930.1  14 FGLVASGLTYWVKSLHTAIDELRKENIRMRELYQLKSDAVRDQEQIMAMLSEIKQSMERTT 74 
                 69999999999977777888****************************9999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 658.85
//
Query:       EHU01931.1  [L=73]
Description: hypothetical protein CKS_0400 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 594.71
//
Query:       EHU01932.1  [L=167]
Description: hypothetical protein CKS_0401 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-54  183.9   0.9    2.4e-54  183.7   0.9    1.0  1  DUF1804   Protein of unknown function (DUF1804)
  ------ inclusion threshold ------
      0.012   15.1   0.1        1.8    8.2   0.0    2.6  3  Rsa3      Ribosome-assembly protein 3
       0.77   10.6   3.9       0.43   11.4   1.2    1.9  2  FIVAR     FIVAR domain


Domain annotation for each model (and alignments):
>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.9     4e-58   2.4e-54       1     163 [.       1     163 [.       1     164 [. 0.99

  Alignments for each domain:
  == domain 1  score: 183.7 bits;  conditional E-value: 4e-58
     DUF1804   1 mAhdeevrkavRsaYvferlsleeaAkkagvseaTarrwkreakekGdDWDklRaakrlaeggieevakqlledfvvqvqetleelrentelsaedkve 99 
                 mAh+ e+r a+R+aY+f+++sle  A++ gvs++Ta rwk+ ++++Gd WD+lR+a+ la+g+ e++a+++l+ ++ q+q+tle++ ++++++a+++v+
  EHU01932.1   1 MAHPRETRDALRRAYIFSNQSLELLAAQQGVSFSTAMRWKKVSADEGDSWDALRTANQLASGAPEDIARAILNSLMGQFQTTLEKVSSADDIPAQERVQ 99 
                 9************************************************************************************************** PP

     DUF1804 100 iLasLsdsfsktvaaakrldPelsklavalevlellaefvrekfpehaealleiLepfgeelak 163
                 +LasLsd+++k +aa+k++ Pe+++ a+a+ ++  l +f+++++p+h++a++ei+e+f  el+k
  EHU01932.1 100 LLASLSDAYTKAIAASKKVLPETDRVATAISTITALSQFIQTRYPQHLAAFVEIIEAFTPELEK 163
                 **************************************************************98 PP

>> Rsa3  Ribosome-assembly protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0003       1.8      18      35 ..       9      26 ..       9      32 .. 0.93
   2 ?   -2.7   0.0      0.79   4.7e+03      18      25 ..      51      58 ..      47      61 .. 0.73
   3 ?    3.9   0.0    0.0065        39       6      36 ..      72     103 ..      69     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0003
        Rsa3 18 DelRkapdFkdksLplLi 35
                D+lR+a  F+++sL+lL+
  EHU01932.1  9 DALRRAYIFSNQSLELLA 26
                89***************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.79
        Rsa3 18 DelRkapd 25
                D+lR+a  
  EHU01932.1 51 DALRTANQ 58
                89999865 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0065
        Rsa3   6 LqllteeFgdDLDelRkapdFk.dksLplLid 36 
                 L++l  +F   L+++ +a+d   +++++lL++
  EHU01932.1  72 LNSLMGQFQTTLEKVSSADDIPaQERVQLLAS 103
                 889999***************99999999986 PP

>> FIVAR  FIVAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.21   1.2e+03      28      56 ..      49      86 ..      46      91 .. 0.57
   2 ?   11.4   1.2   7.2e-05      0.43       2      65 ..      76     134 ..      75     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.21
                HHHHHHHHHHHH........HHHC...TSTT.TTCCCH CS
       FIVAR 28 kkdaynnalsaA........nailnktnnpn.atveqV 56
                ++da+ +a + A         ailn   ++   t e V
  EHU01932.1 49 SWDALRTANQLAsgapediaRAILNSLMGQFqTTLEKV 86
                56666666666655555555777766655544555555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.2e-05
                 HHHHHHHHCCHHHHH...CSCCCCCC-CCHHHHHHHHHHHHHHHC...TSTTTTCCCHHHHHHHHHH CS
       FIVAR   2 ktqLkdsinqatntk...tssnysnydqdkkdaynnalsaAnailnktnnpnatveqVnqalanlnq 65 
                 + q ++++++ ++ +   + ++  +  +++ day++a++a +++l       +  + V +a++++++
  EHU01932.1  76 MGQFQTTLEKVSSADdipA-QERVQLLASLSDAYTKAIAASKKVL-------PETDRVATAISTITA 134
                 5667777777777777745.78888888999**************.......777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1490.21
//
Query:       EHU01933.1  [L=139]
Description: hypothetical protein CKS_0402 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1202.07
//
Query:       EHU01934.1  [L=169]
Description: hypothetical protein CKS_0403 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00091   19.2   1.1     0.0013   18.7   1.1    1.4  1  FdhE            Protein involved in formate dehydrogenase for
  ------ inclusion threshold ------
       0.15   11.9   0.4         14    5.5   0.1    2.3  2  Cys_rich_KTR    Cysteine-rich KTR
       0.29   10.9   7.0        4.6    7.0   3.8    2.3  2  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
        0.7    9.9   4.4         11    6.1   4.4    2.1  2  zinc-ribbons_6  zinc-ribbons
        0.7    9.8   7.7        4.6    7.2   2.1    2.3  3  Zn_ribbon_SprT  SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> FdhE  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.1   3.5e-07    0.0013     156     206 ..     101     151 ..      15     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.5e-07
                 --TTSSS-.-TT-SS-TTT---EEEEEEE-------EEEEEETTT--EEE- CS
        FdhE 156 ldakalaelaeekglCPvCgsaPvasvvriggeaeglRylhCslCeteWhv 206
                 ++a+a+++ + ++ +C  C    ++s+++ g+e eg+R lhC  C+  +++
  EHU01934.1 101 VNADAQNPDEAATYYCAHCHQNGIVSILQPGKEIEGHRSLHCPQCKNDYKF 151
                 445556666677799******************************998875 PP

>> Cys_rich_KTR  Cysteine-rich KTR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0094        34      29      42 ..     115     128 ..     110     134 .. 0.87
   2 ?    5.5   0.1     0.004        14      28      36 ..     140     148 ..     136     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0094
  Cys_rich_KTR  29 fCPKCkqetlinvk 42 
                   +C  C q+ ++++ 
    EHU01934.1 115 YCAHCHQNGIVSIL 128
                   9*********9975 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.004
  Cys_rich_KTR  28 LfCPKCkqe 36 
                   L+CP Ck++
    EHU01934.1 140 LHCPQCKND 148
                   889999976 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.8    0.0013       4.6      21      29 ..     113     121 ..     113     122 .. 0.91
   2 ?    4.8   0.1    0.0061        22       3      15 ..     138     151 ..     136     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
     zf-RRN7  21 fyyCrrCht 29 
                 +yyC +Ch+
  EHU01934.1 113 TYYCAHCHQ 121
                 6*******7 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0061
     zf-RRN7   3 kgppCgvCgc.rsf 15 
                 +   C++C + + f
  EHU01934.1 138 RSLHCPQCKNdYKF 151
                 6778****996666 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.6     0.014        49      47      57 ..     111     121 ..     106     127 .. 0.77
   2 ?    6.1   4.4     0.003        11       2      30 ..     115     153 ..     114     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.014
                     EEEE--TTTT- CS
  zinc-ribbons_6  47 avdyfCnkcne 57 
                     a+ y+C++c++
      EHU01934.1 111 AATYYCAHCHQ 121
                     56788888774 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.003
                     --SSS-S--EE-S..........SEEE-TTT--EEEEEE CS
  zinc-ribbons_6   2 kCpeCqqelekrg..........eqyhCeaCqedlkkea 30 
                     +C +C+q+   +           +++hC +C++d+k ea
      EHU01934.1 115 YCAHCHQNGIVSIlqpgkeieghRSLHCPQCKNDYKFEA 153
                     688888887755556788888888999999999998876 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.1    0.0013       4.6      24      33 ..     112     122 ..     101     127 .. 0.76
   2 ?    6.1   7.6    0.0028        10       4      33 ..     113     148 ..     113     153 .. 0.90
   3 ?    4.8   0.3    0.0072        26       7      16 ..     142     151 ..     141     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0013
  Zn_ribbon_SprT  24 n.YrCrrCkgt 33 
                     + Y+C +C+++
      EHU01934.1 112 AtYYCAHCHQN 122
                     159*****986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0028
  Zn_ribbon_SprT   4 vYrCtgCgreythhlsi.rrhn.......YrCrrCkgt 33 
                     +Y+C +C+  ++ + si ++ +        +C++Ck+ 
      EHU01934.1 113 TYYCAHCH--QNGIVSIlQPGKeieghrsLHCPQCKND 148
                     7*******..69999999*****************975 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0072
  Zn_ribbon_SprT   7 CtgCgreyth 16 
                     C++C++ y++
      EHU01934.1 142 CPQCKNDYKF 151
                     9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1352.89
//
Query:       EHU01935.1  [L=557]
Description: phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 4320.10
//
Query:       EHU01936.1  [L=526]
Description: gp29 family Mu-like phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-172  573.3   0.0   5.4e-172  573.2   0.0    1.0  1  DUF935    Protein of unknown function (DUF935)


Domain annotation for each model (and alignments):
>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.2   0.0    3e-176  5.4e-172       2     519 ..       4     524 ..       3     525 .. 0.96

  Alignments for each domain:
  == domain 1  score: 573.2 bits;  conditional E-value: 3e-176
      DUF935   2 ildakgrpikeekaaleeqtaearvagvrrelsehpssgLtparlarilreaeqGdilaqleLaedmEekdahlaselstRkravlgldwevepasd.s 99 
                 i+d +g p++++  al++q+++     +rr+++ehps g+  +rl +i++eaeqG+++aq++L+ dmEe+d hl++e+s+R+ra+l+l+w+++p+++ +
  EHU01936.1   4 IVDTRGVPFESQ--ALRRQQSD-DNLLLRRQWAEHPSVGININRLYGIFQEAEQGNLTAQADLFCDMEERDGHLFAEMSKRRRAILTLPWKITPPRNaT 99 
                 899*******55..56666664.45579*********************************************************************** PP

      DUF935 100 aaekkladavrelledldeledllldllDAigkGfsvlEilWetsggqwvpralewrdprwfqfdredrrelrlrdeteegeelppfkfvvhrhkaksg 198
                 aae++la +v+e+++d++++e+ll+dl+DA+g+Gfs++Ei W+++g+ w pr++  r++rwfq+   + + +rl d+t +g++l+p ++++hrhkak g
  EHU01936.1 100 AAEQNLATQVTEWFQDMPDFESLLFDLTDAVGHGFSPVEIDWSRQGKLWFPRQFFKRPQRWFQTPLFNGEDIRLIDGTTDGAALWPSGWILHRHKAKCG 198
                 *************************************************************************************************** PP

      DUF935 199 lpirsglaRvlaWpylfKnysvkdwaeFlEvYGlPlrlGkYpagAseeeketLlrAvasigsdAaaiiPesmeiefkeaakagssdlfealaewcdkqi 297
                     +gl+RvlaW+ylfKn s +d+aeFlEvYGlP+r+GkYp+g++++ek  L+rAv+ +g++Aa+i+P++mei+f++aa+ g++d+f  ++ewc++++
  EHU01936.1 199 GFPEAGLFRVLAWTYLFKNLSARDLAEFLEVYGLPMRVGKYPSGTTDDEKMELMRAVMTLGREAAGIMPQGMEINFEDAAE-GQADPFRYMIEWCERTQ 296
                 *********************************************************************************.***************** PP

      DUF935 298 SkaiLGqTlTsdadgkgssnAlgkvhneVreDlrdaDakqlaatlnrqlvrplvdlNfgp...qerlPrfeidveepeDlkalaealekLvelGlrvpq 393
                 Sk+iLG TlTs+++ +++s+Alg+vhneVr++l+++Da+qla tl+r+l++p+++lN  +    +rl rfe+d++epeDlk+la+a+   v++G+ v+q
  EHU01936.1 297 SKVILGATLTSQTE-NNGSRALGEVHNEVRHELLASDARQLAGTLTRELLWPMLALNGYSdidPRRLCRFEFDASEPEDLKTLADAIGASVNAGISVSQ 394
                 *************4.5889**************************************9999999*********************************** PP

      DUF935 394 sevrdklglpepeedeevlkaaesaepeaaaapaalaakaaa.....alaaaaaaeaaeqdaldaladealeeaeaalepllapvlelleeaesleelr 487
                 ++++++ g+p p++++++l +++++++  a+ + al ++ a      ++a + + ++++q+a+d + ++++ +aeaa+++llap++++l+e++s+e+l 
  EHU01936.1 395 AWAHERTGIPFPAAGDALLVPPGNKKDIPATLS-ALYDARAMlpftqQAALSVQSDNSAQQAVDGAPQALTGDAEAAMKTLLAPLVAALSEGQSPEALP 492
                 ********************8888888777777.3333333367775667799********************************************** PP

      DUF935 488 erlaelypdmdaeelaelLaralfvAellGrl 519
                 + ++++yp++d ee+ +l+++alfvA+l+Gr+
  EHU01936.1 493 AIIDAAYPQLDGEEMRQLIENALFVADLWGRV 524
                 ******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3706.24
//
Query:       EHU01937.1  [L=414]
Description: hypothetical protein CKS_0406 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-30  105.0   0.0    5.7e-30  104.3   0.0    1.4  1  Phage_Mu_F  Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> Phage_Mu_F  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   3.2e-34   5.7e-30       2     111 ..      55     183 ..      54     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 3.2e-34
  Phage_Mu_F   2 kirdavtqaiarGegeeelakelkkr.....................gqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvavkdsrtrp 79 
                 +++ a+t+a++ G++   ++ +l ++                      +l++  rl ti rt+t+ ay a+r+++ +a+++++++ w+yvav+dsrtrp
  EHU01937.1  55 DVHGALTKALEDGQTAAWFKDNLIPQltrrgwmgsglkadadgvlegRKLMPY-RLDTIFRTNTQSAYMAGRYEKMRANVKARPY-WQYVAVMDSRTRP 151
                 68889**********999999999888999****************9445577.*******************************.************* PP

  Phage_Mu_F  80 eHaaldGkvfkvddpfwqtgappedvnCRCrv 111
                  Haal+G +f++ddp+w+t +pp+++nCRCrv
  EHU01937.1 152 AHAALNGRIFRWDDPIWDTIFPPNGYNCRCRV 183
                 ******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3163.26
//
Query:       EHU01938.1  [L=111]
Description: hypothetical protein CKS_0407 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-15   55.9   0.2    7.9e-15   55.0   0.2    1.4  1  Phage_tail_S    Phage virion morphogenesis family
  ------ inclusion threshold ------
      0.072   14.1   0.0       0.14   13.1   0.0    1.5  1  HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-compon


Domain annotation for each model (and alignments):
>> Phage_tail_S  Phage virion morphogenesis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.2   8.8e-19   7.9e-15       5     114 ..      12     107 ..      10     111 .] 0.92

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 8.8e-19
  Phage_tail_S   5 avedalkrllakladrrplmraigeeLresqeqrfeaqkdPdGspwkplkdktlaakkgkikrggkilrklgrlarslkteatsdsvevGsnkiyAa 101
                   ++e+al+r++++la+r+plmr+i e + ++  ++f ++ +P    w p +            r+gkil+++grla+s+ t +++d++ vG+n iyA+
    EHU01938.1  12 ELEQALARMADRLARREPLMREISEHMYKAVMDNFDQEGQP--VKWLPVA------------REGKILQDSGRLASSIDTYSDNDRAVVGTNVIYAR 94 
                   689**************************************..9999999............4679******************************* PP

  Phage_tail_S 102 iHQfGgkagrdrv 114
                   i   Ggk++ +++
    EHU01938.1  95 IQNQGGKTKPHEI 107
                   ******8775555 PP

>> HK97-gp10_like  Bacteriophage HK97-gp10, putative tail-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05      0.14      27      81 .]      17      99 ..       8      99 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
  HK97-gp10_like 27 Akevldkakkrtp..................................svdtggdLrdsitvqgkvkkkggeyrvevgnnaeyArlvEfG 81
                     ++++d + +r p                                  +  + g+L++si         +++ r +vg+n  yAr+++ G
      EHU01938.1 17 LARMADRLARREPlmreisehmykavmdnfdqegqpvkwlpvaregkILQDSGRLASSIDT------YSDNDRAVVGTNVIYARIQNQG 99
                    3444444444444444444555566666666666677777655555533355778888777......45669**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 905.71
//
Query:       EHU01939.1  [L=516]
Description: TP901 family phage tail tape measure protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-13   50.3   8.3    2.7e-13   50.3   8.3    2.4  2  PhageMin_Tail   Phage-related minor tail protein
     0.0031   17.2   0.2      0.032   13.9   0.0    2.5  2  End_N_terminal  N terminal extension of bacteriophage endosia
  ------ inclusion threshold ------
      0.029   14.8   0.0      0.061   13.8   0.0    1.5  1  DUF3209         Protein of unknown function (DUF3209)


Domain annotation for each model (and alignments):
>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   8.3   4.4e-17   2.7e-13      15     164 ..       9     171 ..       3     216 .. 0.82
   2 ?   -1.6   1.8      0.34   2.1e+03      14      61 ..     337     382 ..     324     390 .. 0.67

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 4.4e-17
  PhageMin_Tail  15 atelaealeelasaGvsteeilnllegaaklataggaddleeaaeilstalnafglsaadaeeaaDvlaaaanngatsvedlaealkevgavakaa 110
                     +++ +a e ++++ +  +++ ++l+ ++k++ta+gad + ++a+ ++++  +fg ++++a +a+D+ + a+++g+++v+ l+   ++ +  ak+a
     EHU01939.1   9 REDALAAGEVMGRSKMGRDDVYSALPEVMKVSTATGAD-ARDVATLMTST-YNFGFKDEQARAALDAATTASQHGKADVALLSREAPRGLENAKSA 102
                    689999******************************77.***********.67999978************************************* PP

  PhageMin_Tail 111 Glsfee....taaalallaaagikgseAgtalknllsrltkeaaealkkl......G.......istkdaq 164
                    G+ +e+    ++a+  + a+   +++e +t+ + l+s+l  ++ +++++       G       +  kdaq
     EHU01939.1 103 GFGGEKgfadVLALYEVAASVAGTADEGATNTNDLISEL--SSVNLANSAnrvkinGkrlnyksMALKDAQ 171
                    ***99999978888888888889****************..444444444322333222112223334444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.34
  PhageMin_Tail  14 satelaealeelasaGvsteeilnll.egaaklataggaddleeaaeil 61 
                    +a  +a++ ++l   G +++ +++ll +ga  +  +g+   +e++ae++
     EHU01939.1 337 AAGGFAKGGYDLLTGG-KGGLLKKLLrKGAGEAGEVGQ-V-AEDVAEAA 382
                    5566777777777755.477777777777777777777.4.56666655 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.4e-06     0.032      13      53 ..     141     182 ..     127     185 .. 0.77
   2 ?   -0.7   0.1      0.19   1.1e+03      45      57 ..     235     247 ..     232     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.4e-06
                     HHHH.HHHS-TTS-EE-TT-EEEESS---GGGEES-EEEE-S CS
  End_N_terminal  13 lsev.laaapvgkkidGrGltykvssLPDisrfknarfvyeR 53 
                     ls+v la++++  ki+G+ l yk   L D +r +n+ +  e 
      EHU01939.1 141 LSSVnLANSANRVKINGKRLNYKSMALKDAQRGHNTLYTLEH 182
                     33334899999*************************998775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.19
                     ES-EEEE-SSTT- CS
  End_N_terminal  45 knarfvyeRiaGq 57 
                     kna   yeR +Gq
      EHU01939.1 235 KNAFLGYERNPGQ 247
                     788888******9 PP

>> DUF3209  Protein of unknown function (DUF3209)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     1e-05     0.061      55      95 ..     171     210 ..     148     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHHHHHHH....STT-HHHHHHHHHHHHHHHH CS
     DUF3209  55 erhldaalvdLeeevaktdeddpeldYlRgrlvavrdaera 95 
                 +r  +++l  Le  v ++d++dpe++ lR +l+av d +++
  EHU01939.1 171 QRG-HNTLYTLEHMVQAVDRNDPEMKALRRKLIAVTDPNAR 210
                 444.357999*************************986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3969.30
//
Query:       EHU01940.1  [L=445]
Description: phage virion protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-25   89.7   0.0    2.6e-25   88.6   0.0    1.6  1  DNA_circ_N    DNA circularisation protein N-terminus
  ------ inclusion threshold ------
        2.6    8.1  12.1       0.12   12.4   1.3    2.6  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> DNA_circ_N  DNA circularisation protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   2.9e-29   2.6e-25       2      86 ..      17     101 ..      16     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 2.9e-29
  DNA_circ_N   2 lrkAsFrGvpFeveeaedsfgrrlavheYPkrdkpdvedlGrkareirleavlvgddylaqrdaLiealekpgageLvhPtlGel 86 
                 l +AsFrGv+F++ +++d+  r ++ ++YP+ d+++ved G +  ++r++a+l+g+d  +q++aLi+a++++g+geL+hP++G++
  EHU01940.1  17 LMQASFRGVEFDCLATRDTLARTTVNYAYPYHDGATVEDQGLNPVNFRITAFLFGHDWKQQLKALITAFKASGPGELIHPVYGSI 101
                 679********************************************************************************97 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.3   1.4e-05      0.12      18      88 ..     164     232 ..     141     250 .. 0.71
   2 ?    0.1   3.5     0.086   7.7e+02      17      70 ..     301     351 ..     288     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
  Baculo_PEP_C  18 LtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldt...lltnLtdalnalqdtlrneLt 88 
                   ++++++++r+++  +   ++t++++ e +L+++ e+++s+ a++++ ldt   l++ L++ + +++dt    Lt
    EHU01940.1 164 FSTAMSDLRALENGV-ERINTIVAQGEYVLSSVREEIQSAAASVSNLLDTpaaLVSDLKSLVSTFSDT----LT 232
                   567788888888888.8888888888888888888888888888886665111344444444444444....44 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.086
  Baculo_PEP_C  17 dLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtllt 70 
                   +L +v ++i lqn +++  l+++   ie++ n++ + + ++la+++++l+++ +
    EHU01940.1 301 ELAEVAATI-LQNETTTPSLTSTW--IEQVTNSVRTVIVDALADQRAALQATEA 351
                   788888888.88888888887653..4555566666777778888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3144.05
//
Query:       EHU01941.1  [L=370]
Description: tail protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2896.70
//
Query:       EHU01942.1  [L=221]
Description: gp45 family Mu-like phage protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-36  123.9   0.1    2.7e-36  123.3   0.1    1.3  1  Phage_Mu_Gp45  Bacteriophage Mu Gp45 protein
    1.1e-08   34.9   9.9    1.4e-07   31.5   9.9    2.5  1  Phage_spike    Phage spike trimer
    0.00057   19.6   2.2       0.33   10.7   0.1    3.3  3  PEP-utilizers  PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
      0.039   14.5   1.0      0.095   13.3   1.0    1.7  1  Plug           TonB-dependent Receptor Plug Domain
       0.07   14.1   2.2       0.11   13.5   0.5    2.1  2  CHRD           CHRD domain


Domain annotation for each model (and alignments):
>> Phage_Mu_Gp45  Bacteriophage Mu Gp45 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.1   7.4e-40   2.7e-36       1      99 [.      22     120 ..      22     121 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 7.4e-40
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--S---SSSTT-EEEE-TTS-EEEEETTE CS
  Phage_Mu_Gp45   1 aRgvvtlvndsgkvqtlqvellagetlddverfqpyGftSvppaGaeaivlavgGdrshgvviavedrryRlkglkeGevalYddegqkvvlkrgr 96 
                    +R+ +t+++++g+v+t+q+++lagetl+ +e+fq++G+tSvpp+Ga+aiv+++gG++shg+v+a+e+++yR+++lk+Geva+Y+++g++++lk+g+
     EHU01942.1  22 FRAALTRITSTGGVMTAQLDGLAGETLQSLEVFQHFGITSVPPEGAMAIVIPLGGRTSHGIVVATEHSEYRIQSLKPGEVAIYNSDGASITLKNGK 117
                    7*********************************************************************************************** PP

                    EE. CS
  Phage_Mu_Gp45  97 vie 99 
                    +i+
     EHU01942.1 118 AIH 120
                    996 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   9.9   3.9e-11   1.4e-07       2      52 ..     130     193 ..     129     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.9e-11
                  -SEEEEE-SSEEEEESSEEEEEEEEEEE.EEEESSEEEEE............S-EEEESS-EEE CS
  Phage_spike   2 iktatvkAstsitLdtPevecTgnLtvg.tltvqgGGtik............GdithsgGnlss 52 
                  +kta ++As+s+t+ tP+ ++++n tv+  lt +gG+ i+            G i+h+ G++ss
   EHU01942.1 130 CKTAAITASESVTFTTPDFTTSENATVKgLLTGNGGMNISgdngggaaasfaGSISHTSGSISS 193
                  8***************************989999998777777878888888999******998 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   9.1e-05      0.33      24      44 ..      67      87 ..      59      90 .. 0.89
   2 ?   -0.6   0.0       0.3   1.1e+03      13      39 ..      96     122 ..      92     132 .. 0.64
   3 !    6.3   0.1    0.0022       7.8      13      35 ..     144     167 ..     140     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.1e-05
                   EEEEEES--TTHHHHHHHHHH CS
  PEP-utilizers 24 aaGivterGGmtSHaAivAre 44
                   a +iv+  GG+tSH  +vA e
     EHU01942.1 67 AMAIVIPLGGRTSHGIVVATE 87
                   789****************87 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.3
                    --HHHHTTS-GEEEEEES--TTHHHHH CS
  PEP-utilizers  13 tspsdiagldkaaGivterGGmtSHaA 39 
                    ++p ++a ++   + +t + G+  Ha 
     EHU01942.1  96 LKPGEVAIYNSDGASITLKNGKAIHAT 122
                    566666666666666677777666664 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0022
                    --HHHHTTS-.GEEEEEES--TTH CS
  PEP-utilizers  13 tspsdiagld.kaaGivterGGmt 35 
                    t+p+ +   +  ++G++t +GGm+
     EHU01942.1 144 TTPDFTTSENaTVKGLLTGNGGMN 167
                    89999997778************7 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.0   2.7e-05     0.095       8      82 ..     138     217 ..     131     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
                 EEEE.EEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G......GCSEEEETTEEESCCCCSCTCGCSSB CS
        Plug   8 svsv.vtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs......nrvlvlvDGvpianggsgagdlssid 82 
                 s sv +t+ d++++ + +++ +l g  g+n+  sg++gg++  s+ G  s      +++ v ++Gv++    ++ +d +s +
  EHU01942.1 138 SESVtFTTPDFTTSENATVKGLLTGNGGMNI--SGDNGGGAAASFAGSIShtsgsiSSISVKINGVEVDKHIHTTPDGNSGP 217
                 333347999*********************7..55555555555555533444599***********998777776666655 PP

>> CHRD  CHRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       0.4   1.4e+03      54      54 ..     122     122 ..      30     172 .. 0.61
   2 ?   13.5   0.5     3e-05      0.11      18      63 ..     175     219 ..     156     221 .] 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.4
        CHRD  54 g 54 
                 +
  EHU01942.1 122 T 122
                 1 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3e-05
        CHRD  18 gasGtavltldddgktl.sysvtvsglsdvtaaHihegaagengpvv 63 
                 ga+ +++ +++++++++ s+sv+++g+   +++Hih++++g +gp +
  EHU01942.1 175 GAAASFAGSISHTSGSIsSISVKINGV--EVDKHIHTTPDGNSGPMQ 219
                 355666666766655551569999***..79*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1794.63
//
Query:       EHU01943.1  [L=112]
Description: hypothetical protein CKS_0412 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-10   40.6   0.0    2.4e-10   40.2   0.0    1.1  1  GP46      Phage protein GP46


Domain annotation for each model (and alignments):
>> GP46  Phage protein GP46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.3e-14   2.4e-10      42     111 ..      36     104 ..      29     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.3e-14
        GP46  42 dpiGSrlWllrReklttevlrkakeyaeeALqWliddgvaksvdveaerserdvlalsvtltepdgstlk 111
                 + +GSrl +l R+  ++++++ a+  a +AL++li+dg a++ +v+a+r+ ++++ lsv +t+++g +++
  EHU01943.1  36 RDLGSRLSELPRK-DAEQTRALAEMCAYQALSPLITDGRATALQVTASRKLPGWISLSVRITQATGVVAT 104
                 689********95.6799*********************************************9987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 873.45
//
Query:       EHU01944.1  [L=360]
Description: gp47 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-58  196.3   9.4    6.4e-58  195.9   9.4    1.1  1  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.9   9.4   3.6e-62   6.4e-58       2     253 ..      66     315 ..      65     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 195.9 bits;  conditional E-value: 3.6e-62
  Baseplate_J   2 geyLdrlgelevgvtRkpAtkAsgtvtftgeagtvIpaGtrvsta.dglsfattedtitagqgsatvkvtaeeaGaagNvpagtsllldtaiagiqsv 98 
                  +eyL+ ++ +  g+tRk+A +A g+vt tg+a+t +  G +++ + ++  ++tt+   t ++g++tv+++a+++G+agN++ag++ +l +a++gi+s+
   EHU01944.1  66 KEYLEVHAGQ-RGLTRKQAAAAGGSVTLTGKAATPVAGGLQFRVKgNNTLYQTTAGGKTGSDGKVTVTAKATTPGTAGNLTAGATGTLVSAPSGIDSA 162
                  79******99.5*******************************999999*******9****************************************9 PP

  Baseplate_J  99 avantkvssgGadiEsdealreRillalqepptgGnkadYkewalevqgVtrakvlplwngpGtVkvvilldngglPtaellakVqayiseglrPvt. 195
                  +++ t+  +g +d+E+deal++R+l  +++pp gGn++dYk wa++v+gV+ a+v+pl++g GtV+vvi+  +g lP+ae l +Vq yi + +rPv+ 
   EHU01944.1 163 VTVVTM--TGATDTETDEALLARLLDVMRQPPAGGNAHDYKVWAESVNGVSGAYVFPLRRGLGTVDVVITATGG-LPSAETLRAVQGYI-DSVRPVGp 256
                  999866..***************************************************************666.**************.88888873 PP

  Baseplate_J 196 ..aevtvlaptekavnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqie 253
                    a + vlap  k+v++ta++ ++++t+ +a++ a++a+++++f    +pg++  +sq+ 
   EHU01944.1 257 gaAGCKVLAPAIKTVDVTAAVGISDSTTFDAARVAITASLNTWFNA-LTPGQEAIRSQLG 315
                  33699***************9999999*9****************9.6778888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 3152.71
//
Query:       EHU01945.1  [L=161]
Description: hypothetical protein CKS_0414 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-31  110.0   0.0    1.2e-31  109.8   0.0    1.0  1  DUF2313          Uncharacterised protein conserved in bacteri
     0.0074   16.6   0.0      0.019   15.2   0.0    1.7  1  Nif11            Nif11 domain
  ------ inclusion threshold ------
      0.043   13.7   0.0      0.065   13.1   0.0    1.3  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> DUF2313  Uncharacterised protein conserved in bacteria (DUF2313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0     2e-35   1.2e-31       3     150 ..      10     161 .]       8     161 .] 0.96

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 2e-35
     DUF2313   3 llallppglaesr..elqallegeapeldrleasaddllkelfpetatelLkdWEkvlglpdnssetleeRRaavlaklnekgglsiayikklaesllG 99 
                 l +llpp+ ++    +l+a l++ea+ l++++a +  l + ++p++at +L+dWE+v++l+ ++s+tl++RRa+v+a l+e+ggls++y+ +la++l G
  EHU01945.1  10 LAQLLPPVTYDASgeRLSAELSAEAKLLATVDALIAGLASSIDPNQATLTLPDWERVYALTVSDSDTLQQRRARVMAALAETGGLSRQYFINLAKAL-G 107
                 789********9999**********************************************************************************.* PP

     DUF2313 100 eeeveItenqparvganr.erYifqVqvp.........gasgagenLeawgaavlecller 150
                 +  ++I+e        n+ +r+i++V+ +         g+s +g++Le++g+ +le+l++r
  EHU01945.1 108 Y-DITIDEPD------NPkWRWIVNVRGTperiwyfrvGESVVGDRLEESGDPDLETLFKR 161
                 9.******99......4449999999999***************************99876 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.2e-06     0.019      18      47 ..      79     114 ..      75     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.2e-06
       Nif11  18 alreqlkacs......dheevvalAkeaGyefteee 47 
                 ++r++++a+       +++ ++ lAk++Gy++t +e
  EHU01945.1  79 QRRARVMAALaetgglSRQYFINLAKALGYDITIDE 114
                 56777777733456679999*************998 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.065      41     102 ..      38      95 ..      11     113 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
  2_5_RNA_ligase2  41 adlaellsrlaketepfevrldgfgvFehkksvvylsvsdsealqalraallealpeagdke 102
                      a +++l++ la++++p +++l+ ++      +v  l vsds++lq+ ra++++al+e+g ++
       EHU01945.1  38 ATVDALIAGLASSIDPNQATLTLPDW----ERVYALTVSDSDTLQQRRARVMAALAETGGLS 95 
                      44455555555566665555555444....34778888******************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1368.68
//
Query:       EHU01946.1  [L=344]
Description: phage tail collar protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-10   39.3   0.2    9.4e-10   38.4   0.2    1.5  1  Collar    Phage Tail Collar Domain
  ------ inclusion threshold ------
      0.083   12.9   0.1       0.82    9.7   0.0    2.6  3  Rib       Rib/alpha-like repeat


Domain annotation for each model (and alignments):
>> Collar  Phage Tail Collar Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2   1.1e-13   9.4e-10       3      57 .]     165     210 ..     163     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.1e-13
                 EEEESSSS-SSTEEESBS-B--TTT-HHHHHHCTTTTSB.-SSSBB--B-TTXXX CS
      Collar   3 iipfagnlapaGWllcdGqslsisqypaLfaliGttyGgdgqttfnLPDlrgrfv 57 
                 + p++++++p+G+++++Gq++++++y++L+a         +++++ LPD+rg+++
  EHU01946.1 165 PLPWPTDSPPSGYAIMQGQAFDTTKYTQLAA---------AYPSGTLPDMRGQTI 210
                 689****************************.........************976 PP

>> Rib  Rib/alpha-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.1e-05      0.82      11      27 ..      86     102 ..      80     134 .. 0.80
   2 ?   -1.2   0.0      0.23   2.1e+03      12      27 ..     188     203 ..     179     221 .. 0.51
   3 ?   -3.3   0.0         1   9.1e+03      35      45 ..     292     302 ..     283     306 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.1e-05
         Rib  11 atdgikNksdlPdGTky 27 
                 a +++kN+sdlPd Tk+
  EHU01946.1  86 ALQKDKNLSDLPDATKA 102
                 5689************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.23
         Rib  12 tdgikNksdlPdGTky 27 
                 t+  +  +  P+GT  
  EHU01946.1 188 TKYTQLAAAYPSGTLP 203
                 4444555555666654 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1
         Rib  35 ttksGekeavv 45 
                 t+ sG++  +v
  EHU01946.1 292 TSASGNHAHTV 302
                 66777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 3204.53
//
Query:       EHU01947.1  [L=197]
Description: tail fiber assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-26   90.7   1.0    1.1e-25   90.2   1.0    1.2  1  Caudo_TAP       Caudovirales tail fibre assembly protein, lam
  ------ inclusion threshold ------
       0.02   14.7   1.1       0.02   14.7   1.1    2.5  2  Phage_tail_APC  Phage tail assembly chaperone protein


Domain annotation for each model (and alignments):
>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   1.0   1.2e-29   1.1e-25       1     129 [.      72     197 .]      72     197 .] 0.96

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.2e-29
   Caudo_TAP   1 rkqklfstdtlkieydkeggelpesvvevsdineelkiqpkgkflvsdgeglpawvedkkeeqiqqAeqekqqllaqAseqiaplqdavdlgiatdeEk 99 
                 r+++++s  ++ ++ ++++g+lp+ +v  +         p+ k+++++g ++  +++++k++ +++A +++q+ll++A++ +a+++++++l+ +tde+k
  EHU01947.1  72 RGKTVYSILDGSSQLITSLGDLPQGTVSTE---------PEEKYMKWNGSAWVHDADAQKAAFQEKARAQRQRLLTAANAVTADWRTELQLDVITDEDK 161
                 68999999999*************666666.........************************************************************ PP

   Caudo_TAP 100 aaLlawkkYrvlLnrvDvslapd......ieWPeqP 129
                   L++w+ Y+++L+ +D+sl+ d      i WP +P
  EHU01947.1 162 VSLIKWMAYIKALKTLDFSLVNDeagynaIVWPDKP 197
                 **********************************99 PP

>> Phage_tail_APC  Phage tail assembly chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.29   2.6e+03      43      54 ..      32      43 ..      32      49 .. 0.87
   2 ?   14.7   1.1   2.3e-06      0.02       2      59 ..     127     197 .]     126     197 .] 0.68

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.29
                    S---SS--S--- CS
  Phage_tail_APC 43 lPeqegfPaave 54
                    +P+++g Pa+++
      EHU01947.1 32 IPAHTGLPANCT 43
                    6999****9996 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.3e-06
                     HHHHHHHHHHHHHTHH.......HHSTTS---HHH..HHHHHHHHHHHHHS.....---SS--S-------- CS
  Phage_tail_APC   2 aevRaeRdrrLaasDw.......vqlpDspldeee..rqalkaYrqaLRDl.....PeqegfPaaveWPeeP 59 
                     ++ Ra+R r+L+a+           + D  +de++    +++aY+ aL  l     +  +g  +a++WP++P
      EHU01947.1 127 EKARAQRQRLLTAANAvtadwrtELQLDVITDEDKvsLIKWMAYIKALKTLdfslvNDEAGY-NAIVWPDKP 197
                     578*********9985345557423346666666667789********97522111344444.6*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1849.37
//
Query:       EHU01948.1  [L=130]
Description: hypothetical protein CKS_0417 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   13.4   0.1      0.057   13.2   0.1    1.0  1  DUF445    Protein of unknown function (DUF445)
      0.053   13.8   0.2      0.084   13.1   0.2    1.3  1  DUF4841   Domain of unknown function (DUF4841)
      0.053   13.8   0.4       0.94    9.8   0.2    2.2  2  PqqD      Coenzyme PQQ synthesis protein D (PqqD)
      0.089   12.4   0.0       0.11   12.1   0.0    1.2  1  DUF4795   Domain of unknown function (DUF4795)


Domain annotation for each model (and alignments):
>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05     0.057     125     238 ..       6     125 ..       1     129 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
      DUF445 125 llgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklv......lesivsmflreltsilekvksdpdhllreeedkkvrel 217
                 + g++ ++++++ r k+++d +l  i    ++e++++  ++ +++l+  ++ ++        ++i s f+ +++si+ek+ +++    + e + +v+++
  EHU01948.1   6 ITGNIEKAAITQLRSKAIVDGILAVIYTGPTKEDATAAATDFVNHLTLHNEASVRtacgdnFDKIQSAFAGQAQSIAEKLADAVIDADKAEVEGQVQTY 104
                 445555568999999999999999999999999999999999999988887666699**999************************************* PP

      DUF445 218 iadllndpelaakveklkkkk 238
                 +++l+ + ++ +  +k+  + 
  EHU01948.1 105 VDNLQYKHSVDNGQDKVSAAQ 125
                 *****9876666666665555 PP

>> DUF4841  Domain of unknown function (DUF4841)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   1.9e-05     0.084       4      59 ..      72     127 ..      70     130 .] 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
     DUF4841   4 SiytDeaCseesllaenpvvdesksieLeiPtavqtlYvqYptasGkkevkevpvk 59 
                 S ++ +a s +++la+ ++++ + ++e ++ t+v  l  +    +G+ +v++  v 
  EHU01948.1  72 SAFAGQAQSIAEKLADAVIDADKAEVEGQVQTYVDNLQYKHSVDNGQDKVSAAQVA 127
                 6788889999************************************9999987775 PP

>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.056   2.5e+02      38      61 ..      27      51 ..      14      54 .. 0.79
   2 ?    9.8   0.2   0.00021      0.94      32      64 ..      78     111 ..      70     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.056
                HHHHHC.T--HHHHHHHHHHHHHHH CS
        PqqD 38 alaeey.dvdeeeaeadvlafldqL 61
                +la +y + ++e a a+  +f+++L
  EHU01948.1 27 ILAVIYtGPTKEDATAAATDFVNHL 51
                3678896666999********9988 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHC.T--HHHHHHHHHHHHHHHHCT CS
        PqqD  32 veeivaalaeey.dvdeeeaeadvlafldqLrek 64 
                  + i+++la+   d+d++e+e  v+ ++d L+ k
  EHU01948.1  78 AQSIAEKLADAViDADKAEVEGQVQTYVDNLQYK 111
                 5689*****9999****************99855 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.5e-05      0.11      77     131 ..      59     123 ..      46     130 .] 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.5e-05
     DUF4795  77 LatkvsrdqfDeakkeLekmleellekle.........eqeealkkaldtLq..eelkekldrlel 131
                 ++t +  d+fD+  +++  +++++ ekl          e+e +++  +d+Lq   ++++  d+++ 
  EHU01948.1  59 VRTAC-GDNFDKIQSAFAGQAQSIAEKLAdavidadkaEVEGQVQTYVDNLQykHSVDNGQDKVSA 123
                 56666.789******************9999999***9**************99999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 977.54
//
Query:       EHU01949.1  [L=34]
Description: hypothetical protein CKS_0418 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      118  (0.00658152); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 281.86
//
Query:       EHU01950.1  [L=86]
Description: putative methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-19   69.8   0.0    2.9e-19   69.8   0.0    1.0  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   1.6e-23   2.9e-19       1      77 [.       8      80 ..       8      86 .] 0.91

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 1.6e-23
                     STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TC CS
  MethyltransfD12  1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekll 77
                     ++GgKrkl++++  l+p   ++++vepF+Gg+a+ff   +q k  ++nDin d++nly+ +i+n  ee+ik+++ +l
       EHU01950.1  8 WVGGKRKLAKHLLPLFP--AHTCYVEPFCGGAALFFMK-EQSKAEVLNDINGDIVNLYR-VIQNHLEEFIKQFKWAL 80
                     9****************..689*************877.68******************.************99554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 701.11
//
Query:       EHU01951.1  [L=124]
Description: DNA adenine methylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0059   16.3   0.0      0.009   15.7   0.0    1.4  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.018   15.0   0.0    1.2  1  Baculo_RING      Baculovirus U-box/Ring-like domain


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     1e-06     0.009     156     192 ..      11      47 ..       2      99 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-06
                      HHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T.S.. CS
  MethyltransfD12 156 klknakiecgdfdavllkakieddivYlDPPYnprqy 192
                      +l  ++ie  d ++ +++++  + ++YlDPPY  +q 
       EHU01951.1  11 RLHRVAIEHLDWQECMRRYDRTGTLFYLDPPYWKTQG 47 
                      555688999999999****99999********98553 PP

>> Baculo_RING  Baculovirus U-box/Ring-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     2e-06     0.018      53     113 ..      17      86 ..      11     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
  Baculo_RING  53 lekvlhkecikrfrreek....rdpykrvikyrfeypfktleeakvlleesktfv....Gde.eiievyk 113
                  +e++  +ec +r+ r  +      py +   y   + + + e+  vl + +k++v     d+ ++ +v+ 
   EHU01951.1  17 IEHLDWQECMRRYDRTGTlfylDPPYWKTQGYGVPFGMEQYEQMAVLARTTKGYVvisvNDHpDMRRVFS 86 
                  7888899******999874442458*****************************9888767635667775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 964.78
//
Query:       EHU01952.1  [L=78]
Description: hypothetical protein CKS_0421 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 654.59
//
Query:       EHU01953.1  [L=43]
Description: hypothetical protein CKS_0422 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 382.30
//
Query:       EHU01954.1  [L=104]
Description: PTS system cellobiose-specific IIA component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-32  109.3   5.3      8e-32  109.2   5.3    1.0  1  PTS_IIA   PTS system, Lactose/Cellobiose specific IIA subunit


Domain annotation for each model (and alignments):
>> PTS_IIA  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   5.3   4.5e-36     8e-32       2      93 ..       7      98 ..       6      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 4.5e-36
     PTS_IIA  2 iameiIlhaGeArslameAlkaakegdfeeaeellkeAeeelkeAhkaqteliqkeasgekvevslllvHAqDhLmtaellkdlakeliely 93
                +++e+I++aGeArs+ meAl+aa+++++ +a+++l++A  + k+Ah++qt+li +++++ k++vsl++vHAqDhLm+a+l+++la+e+i+l 
  EHU01954.1  7 TVIELIIQAGEARSCSMEALRAARQQNWAQADSMLSAATAAAKAAHQTQTQLIGADEGSGKIPVSLIMVHAQDHLMNAMLCRELAEEIIQLR 98
                5799*************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1197  (0.0667633); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 831.98
//
Query:       EHU01955.1  [L=476]
Description: beta-glucosidase/6-phospho-beta-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.3e-146  486.0   0.1     1e-145  485.6   0.1    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.6   0.1  5.8e-150    1e-145       4     452 ..       8     467 ..       6     468 .. 0.93

  Alignments for each domain:
  == domain 1  score: 485.6 bits;  conditional E-value: 5.8e-150
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHHHH CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGlay 99 
                     fp dFlwga+t+ayq+EGawne+Gkg+s+ D+ t +     + +   v +d+Yhr++eD+all+e+g+k+yrfSi+W+R+ P+G+g +n++G+a+
     EHU01955.1   8 AFPRDFLWGASTSAYQVEGAWNEEGKGPSVIDQATFH----QDLTDFTVCSDHYHRFREDIALLAEMGLKTYRFSIAWSRLYPEGDGALNPAGVAF 99 
                    6*******************************43322....244457799********************************************** PP

                    HHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-.S-TTTHHHHHHH CS
  Glyco_hydro_1 100 YerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPg.kkdleaayeaaH 194
                    Y+++idel  +gi+plvTlyH+dlP aLq++Ggw++r+++ af+++a ++f+++g +vk+wlT+nE+n++ l g + g+++Pg  ++ ++ y+ +H
     EHU01955.1 100 YQQVIDELCRYGITPLVTLYHFDLPWALQQAGGWSSRRTVAAFERFAITCFEHYGRQVKYWLTINEQNMMILKGDVIGTLPPGtADPQKTLYQQNH 195
                    ***********************************************************************************77889999***** PP

                    HHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHH.TT--SE CS
  Glyco_hydro_1 195 nlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkell.kgkadf 289
                    +++la+a+a+ +++e  +++kig + n+s ++++s ++ed+ aa++   + n  +ld  v+G+Y++ +   l++rg+lp+i+++d++++ +gk df
     EHU01955.1 196 HMMLAQAKAMIACHERLPDAKIGPAPNISCVYAASARPEDVLAADNFSAIRNWLYLDLAVHGRYNAVVWAFLKQRGWLPTIEDDDMAIIaAGKPDF 291
                    *****************************************************************************************889**** PP

                    EEEEEEEEEEEEE--...-S.TT---SSGGGGG-........SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.HHH- CS
  Glyco_hydro_1 290 lglnyYtsrlvknkeseeas.lskteekkleeev........dpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee.gkve 375
                    +++nyY s +v ++ + e+s  +   +++++           +p+l + + gw i+p g+r   + ++ +Y  lp+ +teNGlga d +e  +kv+
     EHU01955.1 292 IAFNYYASATVGAEGEGEQSeNKPRPDQQMAGIDrsvyvgcdNPHLRQNQFGWYIDPVGFRITARQIYARYA-LPLIVTENGLGAFDRLEAdNKVH 386
                    *********99887633222022233333333225679**********************************.***************9988**** PP

                    -HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 376 DdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                    Dd+Ri Yl+eh+++++ a++dgv+l gY+ ws +D+++  +g +kr+G++yv+r     ++l R++kkS+ wy+++i++ng
     EHU01955.1 387 DDYRIAYLREHIAQLQLALTDGVELFGYCPWSAIDLVSTHQGVNKRYGFIYVNRdkkdLKDLARYRKKSFFWYQKLIRSNG 467
                    ******************************************************877667899***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3337.97
//
Query:       EHU01956.1  [L=342]
Description: transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-30  107.1   0.9    2.7e-30  105.9   0.3    1.8  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.2e-26   93.8   0.3    1.5e-26   93.5   0.3    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.6e-20   71.9   0.5    4.9e-20   71.0   0.5    1.5  1  LacI          Bacterial regulatory proteins, lacI family
    9.9e-16   58.1   0.0    1.8e-15   57.2   0.0    1.4  1  Peripla_BP_4  Periplasmic binding protein domain
    0.00056   19.7   0.3      0.017   14.8   0.0    2.2  2  Peripla_BP_6  Periplasmic binding protein
     0.0016   18.7   0.4     0.0044   17.3   0.0    1.9  2  HTH_31        Helix-turn-helix domain
     0.0019   18.2   0.0     0.0039   17.2   0.0    1.5  1  HTH_3         Helix-turn-helix
  ------ inclusion threshold ------
      0.047   13.5   0.0       0.18   11.6   0.0    2.1  1  HTH_IclR      IclR helix-turn-helix domain
       0.05   13.0   0.2       0.19   11.2   0.1    2.1  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.061   13.1   0.1       0.17   11.7   0.1    1.7  1  TetR_N        Bacterial regulatory proteins, tetR family
        0.1   12.5   0.0       0.32   10.9   0.0    1.8  1  MarR_2        MarR family
       0.14   12.0   0.0       0.51   10.1   0.0    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.4   2.1e+03       4      83 ..      59     131 ..      56     157 .. 0.42
   2 !  105.9   0.3   1.8e-33   2.7e-30       1     166 []     176     335 ..     176     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
                   HHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEESSC CS
  Peripla_BP_3   4 LvelGhrriafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalll.qalklaalPtAviaasD 83 
                   L+ ++ ++i++i +++  + ++     + + qa+   +++  +  +++++++a +++a++  ll  ++      +A+i++  
    EHU01956.1  59 LATQKSQNIGLIVTHSLFNGPYF---SELLFQAAtLTNNYGRQLILADGKTSADDERAAIEFLLdLRC------DAIIIYPR 131
                   56666667777772222222222...222333331333333333333333333233332222222222......45554443 PP

  == domain 2  score: 105.9 bits;  conditional E-value: 1.8e-33
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC.-S.EEEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqalklaa.lP.tAviaasDelAlgvlqalr 94 
                   +++L+ +Gh +iafi+  g  g++++ +r++g++qal e+gl  ++ +v+++ ++ a++++aa+ ll     ++ +P  A++a +D +A+g+   l+
    EHU01956.1 176 TRYLITRGHYDIAFIT--GLAGSPTAAARLAGYQQALDEHGLADRALIVQGA-WTPASGMAAAKtLL-----ESdMPfSALMASNDDMAIGAALTLN 264
                   589*************..*************************999988766.44555555555133.....3347867****************** PP

                   CTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  95 eaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +ag r Ped+s++gfdd+ +a++++PplTtv++p++e+ +  + +l+++lege  ++ +   + +l+eR+S+
    EHU01956.1 265 AAGKRLPEDVSLLGFDDIRMAEFFLPPLTTVHVPVAEMIQHTLAQLVAMLEGEAVTALPP-FSGHLIERASV 335
                   **************************************************7666555554.45679999986 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.3     1e-29   1.5e-26       2     244 ..      65     299 ..      64     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1e-29
                   EEEEEEES-T..TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTT CS
  Peripla_BP_1   2 lklglvlpql..dePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdg 94 
                   + +gl++  +  + P+f +l+  +    +++g++++l  ++  +d + +ai+ l+  + d++ii  +  +  ++ a  e+ +ipv+ ++++ +    
    EHU01956.1  65 QNIGLIVTHSlfNGPYFSELLFQAATLTNNYGRQLILADGKTSADDErAAIEFLLDLRCDAIIIYPRFLDTAALDAIIEQhAIPVMVVNRQLQRH-P 160
                   5799999999999**************************999999999*****************998888899998888899********9988.7 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-.TT-SEEE-SSHH CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh.Peidaivainde 190
                     cv+    q   ++t++Li +gh   ia + g + + ta++r  G+ +al e+Gl      + +g  +   +  a++ lles  P  +a++a nd 
    EHU01956.1 161 AHCVWATHQQNTFQATRYLITRGHYD-IAFITGLAGSPTAAARLAGYQQALDEHGL-ADRALIVQGAWTPASGMAAAKTLLESDmPF-SALMASNDD 254
                   89******99999*************.*****************************.999999*********************775.********* PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH. CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlpr 244
                   +a+Ga+l l+++G  + +e+v     s++++d +       ++l+pl++  +p 
    EHU01956.1 255 MAIGAALTLNAAG-KRLPEDV-----SLLGFDDI---RMAEFFLPPLTTVHVPV 299
                   *************.9******.....********...77889999999988874 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.5   3.3e-23   4.9e-20       1      46 []       8      53 ..       8      53 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 3.3e-23
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ DVAr+AGVSkaTVSrvL ++++Vs++t+++V++a++e +Y+Pn
  EHU01956.1  8 TMLDVARKAGVSKATVSRVLAGNRYVSKSTQQKVFQAVAETGYRPN 53
                899******************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.2e-18   1.8e-15       8     217 ..      76     280 ..      67     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.2e-18
                   SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--..SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC CS
  Peripla_BP_4   8 ksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivap..vdstalapalkkakaaGIpVvafdsddapsgerlayvgf 102
                   ++ p+fs++  ++    + +g + ++ +d++++a ++ a+ie +++  +d+ii+ p   d++al +++++     IpV++++++   +   +++v +
    EHU01956.1  76 FNGPYFSELLFQAATLTNNYGRQLIL-ADGKTSADDERAAIEFLLDLRCDAIIIYPrfLDTAALDAIIEQ---HAIPVMVVNRQ--LQRHPAHCVWA 166
                   45568887777777777778887777.8***************************933455555566665...449********..88888999999 PP

                   -HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSCCHHHCH CS
  Peripla_BP_4 103 dneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltan.pldgilaandgmaega 198
                   + ++   ++ +yl         +++ ++G +g+p a++r++g  ++l+e  g+   a ++++ w+++ +  a+ +ll  + p  + +a nd+ma+ga
    EHU01956.1 167 THQQNTFQATRYLITRGH---YDIAFITGLAGSPTAAARLAGYQQALDE-HGLADRALIVQGAWTPASGMAAAKTLLESDmPFSALMASNDDMAIGA 259
                   999999999999999998...78**************************.4555555555779***************9999*************** PP

                   HHHHHHTTT..TSTEEEEEES CS
  Peripla_BP_4 199 lealeaagl..agkvvvtgqD 217
                   + +l+aag+    +v + g+D
    EHU01956.1 260 ALTLNAAGKrlPEDVSLLGFD 280
                   ********9865556688888 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.017      45     165 ..      99     216 ..      93     223 .. 0.89
   2 ?    2.6   0.0     0.059        88      50      87 ..     224     261 ..     218     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                   EEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEE CS
  Peripla_BP_6  45 lverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggkkvalv 141
                   l+ +D + ++d   +a + l+d   +da++ +    ++aa+  +++++ +pv+ +  +++ + +p + +++ ++++ +  + +yl++ +g   +a++
    EHU01956.1  99 LILADGKTSADDERAAIEFLLD-LRCDAIIIYPRFLDTAALDAIIEQHAIPVMVV--NRQLQRHPAHCVWA-THQQNTFQATRYLIT-RGHYDIAFI 190
                   7889999999999999999999.99999999999*******************98..7889*********7.55677778899*999.8******** PP

                   E..ESSHHHHHHHHHHHHHHHCCTEE CS
  Peripla_BP_6 142 y..adyafgregiaalkaaakaaGge 165
                   +  a ++  ++  a++++a+ ++G+ 
    EHU01956.1 191 TglAGSPTAAARLAGYQQALDEHGLA 216
                   9766699999999**********986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.059
                   -TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHH CS
  Peripla_BP_6  50 daydpdraaeaarrlvdqdgvdalvgplssavaaavae 87 
                    a++p+ +++aa+ l+++d ++  + + +++ a ++a 
    EHU01956.1 224 GAWTPASGMAAAKTLLESDMPFSALMASNDDMAIGAAL 261
                   689****************9998888755444444444 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.9e-06    0.0044      19      54 ..      11      45 ..       7      56 .. 0.87
   2 ?   -2.6   0.1         5   7.4e+03      18      28 ..     198     208 ..     196     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.9e-06
      HTH_31 19 evAerlgvsestlsrlEqGrrgrpspavlealaral 54
                +vA+ +gvs++t+sr+  G r  +s ++  ++ +a+
  EHU01956.1 11 DVARKAGVSKATVSRVLAGNRY-VSKSTQQKVFQAV 45
                8********************7.9999887777775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5
      HTH_31  18 eevAerlgvse 28 
                 +++A+++g+ +
  EHU01956.1 198 TAAARLAGYQQ 208
                 68999999865 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.6e-06    0.0039       9      39 ..       6      36 ..       2      48 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.6e-06
                THHHHHHHHHHTSSHHHHHHHHTTSSCSBHH CS
       HTH_3  9 glsqeeLAeklGvsrstisriEnGernPsle 39
                ++++ ++A+k+Gvs++t+sr   G r  s +
  EHU01956.1  6 MITMLDVARKAGVSKATVSRVLAGNRYVSKS 36
                68999*******************5555544 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.18      19      40 ..       6      28 ..       3      29 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                -.BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 19 l.tlselArrtglpkStvhRlLq 40
                + t  ++Ar++g++k+tv+R L+
  EHU01956.1  6 MiTMLDVARKAGVSKATVSRVLA 28
                447779**************986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00013      0.19      27      48 ..       6      27 ..       1      28 [. 0.89
   2 ?   -3.2   0.0       3.8   5.6e+03      20      32 ..     234     247 ..     233     248 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwril 48
                  ++++ +vAr  gvS  TV r+l
    EHU01956.1  6 MITMLDVARKAGVSKATVSRVL 27
                  48999***************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
  HTH_Tnp_ISL3  20 ilellles.rsvka 32 
                   +++ lles ++++a
    EHU01956.1 234 AAKTLLESdMPFSA 247
                   67888888899997 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.17      18      34 ..       8      24 ..       7      25 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                -HHHHHHHHTSSHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalY 34
                t+ ++A++AGvsk+++ 
  EHU01956.1  8 TMLDVARKAGVSKATVS 24
                899************86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.32      22      43 ..       7      28 ..       2      29 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
                EEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsrilk 43
                +t+ ++ar+ g+sk++vsr+l+
  EHU01956.1  7 ITMLDVARKAGVSKATVSRVLA 28
                6899***************986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00034      0.51      25      42 ..      11      28 ..       7      30 .. 0.86
   2 ?   -3.2   0.0       4.9   7.4e+03       8      17 ..     110     119 ..     107     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
      HTH_38 25 eIArrLgrspsTIsRElk 42
                ++Ar+ g+s+ T+sR l 
  EHU01956.1 11 DVARKAGVSKATVSRVLA 28
                89*************997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.9
      HTH_38   8 eeReeIerll 17 
                 +eR  Ie ll
  EHU01956.1 110 DERAAIEFLL 119
                 8*****9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2619.11
//
Query:       EHU01957.1  [L=215]
Description: putative membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-17   62.8  10.2      3e-17   62.8  10.2    2.4  2  CPBP      CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.8       0.1   1.8e+03      59      84 ..      22      47 ..       8     107 .. 0.66
   2 !   62.8  10.2   1.7e-21     3e-17       3      92 .]     113     206 ..     111     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.1
                HHHHHHHHHHHHHHHHHTT-HHHHHH CS
        CPBP 59 vllaalaGlvlgylylktgsllaail 84
                +l+++l+ l+  y +l++  ll+++l
  EHU01957.1 22 YLVTMLITLFPNYGILRNDGLLVPVL 47
                45555555555555555544555554 PP

  == domain 2  score: 62.8 bits;  conditional E-value: 1.7e-21
                 TTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH...S-HHHHHHHHHHHHHCSGGG.HHH.HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
        CPBP   3 nlllvfllalllapllEEllfRglllqllqer..gsstlailissilFglaHlpn.gps.vllaalaGlvlgylylktgsllaaillHallnll 92 
                 + l+++l a+llap++EE+lfRg+llq +      s+++ +l++s+lF+l+H  +  +  v++++l++++l+y++l++++l+ +++lH+l+nl+
  EHU01957.1 113 SMLILLLTAVLLAPVFEEVLFRGFLLQGFLLWapNSRFACVLLTSLLFALMHTQYvHWEtVVALTLFSMLLCYARLRSNTLVLPVFLHTLNNLI 206
                 56889999*****************9976555544559**************99888999********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1510.37
//
Query:       EHU01958.1  [L=98]
Description: hypothetical protein CKS_0427 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-12   45.3   0.0    8.8e-12   44.9   0.0    1.2  1  Inhibitor_I78  Peptidase inhibitor I78 family


Domain annotation for each model (and alignments):
>> Inhibitor_I78  Peptidase inhibitor I78 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.9e-16   8.8e-12       1      65 []      39      98 .]      39      98 .] 0.99

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 4.9e-16
  Inhibitor_I78  1 CdAqrvqslvGqpaedsesadvlkrsnsdsvRvlkPGqvvtleynpaRlniivegaGkisalrCG 65
                   C+A r q++vG+p + +e  ++     s+ vR +     vt+++n aRln   +  G i+++ CG
     EHU01958.1 39 CGASRYQNFVGKPLSALEQQRF-----SQKVRAIPWNSAVTMDFNFARLNFLADKSGTITQVYCG 98
                   **********************.....*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 808.27
//
Query:       EHU01959.1  [L=106]
Description: hypothetical protein CKS_0428 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 893.09
//
Query:       EHU01960.1  [L=83]
Description: hypothetical protein CKS_0429 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-11   41.8   0.0    8.7e-11   41.5   0.0    1.1  1  YmgB        Biofilm development protein YmgB/AriR
  ------ inclusion threshold ------
      0.045   14.2   0.1      0.065   13.6   0.1    1.4  1  Secretin_N  Bacterial type II/III secretion system short doma
       0.13   12.5   0.0        0.2   11.9   0.0    1.2  1  DUF4777     Domain of unknown function (DUF4777)


Domain annotation for each model (and alignments):
>> YmgB  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.4e-14   8.7e-11       2      49 ..      26      73 ..      25      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.4e-14
                HHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHT---HHHHHHHHHHH CS
        YmgB  2 EtevLgaiireilasggkvtnKaIIlkLiekLEsesdvvqldvyRqaL 49
                E+ +L+ i re+++ g++ tnKaII+ +i+kLE e d ++l+ yR +L
  EHU01960.1 26 ESDLLAVILRELMEAGQPTTNKAIIARVINKLEFEGDEQRLQRYRGLL 73
                7899*****************************************998 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.1e-05     0.065      14      76 ..      30      76 ..       2      82 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
                HHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHH CS
  Secretin_N 14 lasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqL 76
                la iLrel+++g+               ++ +  ++a +  N l   g+++r++r+r l++qL
  EHU01960.1 30 LAVILRELMEAGQ---------------PTTNKAIIARV-INKLEFEGDEQRLQRYRGLLAQL 76
                89999****5543...............33444555555.8*********************9 PP

>> DUF4777  Domain of unknown function (DUF4777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.4e-05       0.2       6      41 ..      30      65 ..      26      68 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
     DUF4777  6 galvlealkvlnrPaTldEivervaerydlseeelk 41
                 a++l+ l++ ++P T + i+ rv ++++++ +e +
  EHU01960.1 30 LAVILRELMEAGQPTTNKAIIARVINKLEFEGDEQR 65
                689****************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 650.78
//
Query:       EHU01961.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU01961.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU01961.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU01961.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU01961.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 868.22
//
Query:       EHU01962.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU01962.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 992.86
//
Query:       EHU01963.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU01963.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU01963.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU01963.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU01963.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU01963.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU01963.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU01963.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU01963.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU01963.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU01963.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU01963.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU01963.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU01963.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU01963.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU01963.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU01963.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU01963.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU01963.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU01963.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU01963.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU01963.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU01963.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU01963.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU01963.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU01963.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU01963.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU01963.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU01963.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU01963.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU01963.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU01963.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU01963.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU01963.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU01963.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU01963.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU01963.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 3827.57
//
Query:       EHU01964.1  [L=580]
Description: permease component of an ABC superfamily ferric iron transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-29  100.8  61.1    2.5e-18   66.4  20.5    4.2  4  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.7    0.0059   1.1e+02     144     183 ..      65     106 ..      36     108 .. 0.73
   2 !   66.4  20.5   1.4e-22   2.5e-18       3     176 ..      90     289 ..      88     297 .. 0.78
   3 ?   -0.2   7.6     0.039   6.9e+02     106     179 ..     326     402 ..     319     408 .. 0.69
   4 !   47.0  16.7   1.3e-16   2.4e-12       3     183 ..     390     571 ..     388     573 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0059
  BPD_transp_1 144 ailgydyseis..nggvlalviavlllnlvadilqrlldprv 183
                     + + +s+++    + l ++++ lll ++a +l++l d r 
    EHU01964.1  65 LVSRRVLSATLntLSIGLCATLLSLLLGTLAAWLVALSDMRA 106
                   44444444444556799999**************99998775 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 1.4e-22
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilpviillllsaapyvrlirraalrs 78 
                   llG laa     +  + + +  + +i++l++P+ v a+ ++ ++                  +  +   +++ ++++ll l++ap+v+l++ra+lr 
    EHU01964.1  90 LLGTLAAwlvALSDMRAKAAWVFAFILPLMIPPQVTALAWLQALapgsllaslfqllglpwfAPGDQPLFSWGGIVLLLGLHSAPLVFLTVRAGLRR 186
                   56666666655777777788888888999999999666655555666666667777778876445556667777*********************** PP

  BPD_transp_1  79 lpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.......nggvlalviavlll 168
                   lp +lveaar+ Gas+ qi+r+++lP+a p +++g++laf++++g++ +  +lg  p   +++l ++ +++++++        ++++l ++++ l  
    EHU01964.1 187 LPAELVEAARISGASHGQILRTIILPLARPALFAGAALAFVAAVGNFGIQAMLG-IP-ARLPTLITLVYQQLNATGpgalpdtAVYSLLMALISLSG 281
                   ******************************************************.55.777777777788888777788555555556666666655 PP

  BPD_transp_1 169 nlvadilq 176
                   +l++ +l 
    EHU01964.1 282 MLLSGWLG 289
                   55555554 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.039
  BPD_transp_1 106 alppiitglilafggllggavlleflgswpGlgtllleailgydyseis........nggvlalviavlllnlvadilqrll 179
                   ++ p+ ++l  a+++ +g+a+   +l+    l   +++a++gy+    +          ++l+l+++ l l +++ +  + l
    EHU01964.1 326 LILPVSALLTSALTRGFGQALTWQTLT----LE-NFFQALWGYPAIRHAfatslwltGLATLILTAMALFLAFFLSWQRTRL 402
                   68899999999****************....44.345666666666555644456655555556666666666666655555 PP

  == domain 4  score: 47.0 bits;  conditional E-value: 1.3e-16
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.....vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   +l++++   ++ +l + l + ++++++lP +v ++  +l+f      ++ +++ +++ +++++l  ++++v++ + a++ +++  l eaar++Ga+ 
    EHU01964.1 390 FLAFFLS-WQRTRLVRGLWFASELTYALPGIVTGVAAILFFlpplpLLDVSIYGTVWIILAAYLSNFLALVLRPVLAGFAQIEPALDEAARLCGAGL 485
                   4555555.666666666777899*********77777777889997777777778888*************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                    +++r ++lP+a+p++++g +l+f  +l++  +  +l ++    t++l +++++    +s+ +++a++++++l++l +++l++ l +r+
    EHU01964.1 486 MRRMRDILLPLAAPSALAGGLLVFLTALNEIQVSVLLVTS---ETQTLGPTIIFLDEGGSAPLAAAVGCLMILVVLTLMLLATRLTRRL 571
                   ******************************9776666654...4555555555555556658999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4235.34
//
Query:       EHU01965.1  [L=333]
Description: iron-binding periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-23   81.5   1.1    8.5e-23   81.0   1.1    1.1  1  SBP_bac_6        Bacterial extracellular solute-binding prote
    1.4e-21   77.4   2.0    1.9e-21   76.9   2.0    1.2  1  SBP_bac_11       Bacterial extracellular solute-binding prote
      2e-16   60.8   5.3    4.3e-16   59.7   5.3    1.5  1  SBP_bac_1        Bacterial extracellular solute-binding prote
    3.1e-16   60.0   3.6    4.3e-16   59.6   3.6    1.2  1  SBP_bac_8        Bacterial extracellular solute-binding prote
    0.00014   21.6   0.0     0.0067   16.1   0.0    2.3  2  PBP_like_2       PBP superfamily domain
     0.0033   17.4   0.0     0.0052   16.8   0.0    1.3  1  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
  ------ inclusion threshold ------
      0.034   13.5   0.0       0.11   11.8   0.0    1.8  2  LysR_substrate   LysR substrate binding domain
      0.078   13.3   0.0       0.51   10.7   0.0    2.2  2  DUF2880          Protein of unknown function (DUF2880)


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   1.1   3.8e-26   8.5e-23       3     228 ..      85     300 ..      84     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 3.8e-26
   SBP_bac_6   3 lpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdlfe 101
                 +pd++l  d   l+ +++e+ + ++++a + +++       + d d+++ +  + ++v+a+n++r   +pv  sW+ Ll+ + kg++a+p+   s +  
  EHU01965.1  85 KPDVLLVADAINLGALKKEQQLYAYQDAPVGHLK-----PSFYDRDKTFFGTKIIATVIAYNTQRA--KPV-NSWNALLNADNKGQIAMPS---SLYSG 172
                 689999899999999999999999*999999999.....677999********************8..544.9******************...68999 PP

   SBP_bac_6 102 alllalykdfg.edgvkkllrnlkanlhpaq..mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkelakaf 196
                 a+l  l++d    d ++ + ++l+a++   q  +  a+++++sg      ++  +adi+++kk+g ++++v+P++G +++++ +++ k+  + + akaf
  EHU01965.1 173 AALYKLHTDIAtPDIGWNFYKQLAALGIAPQggNGPALKAVASGM--DKYGVITDADIIRAKKQGSPIDLVYPKEGVSYVTEPVAIMKSvHNLPAAKAF 269
                 9999****9999***************999997788889999998..666677789******************************************* PP

   SBP_bac_6 197 idfllspevqailakaggvfPvvtnpavlnel 228
                 ++flls+++q+ +a++g+  Pv++ +a+ + +
  EHU01965.1 270 VNFLLSEQGQKLVADQGN-RPVDDRVAAPEGF 300
                 *****************7.**98555555554 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   2.0   8.6e-25   1.9e-21       5     228 ..      38     286 ..      34     288 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 8.6e-25
                 E-SSTHHHHHHHHHHH.HHHH---EEEEESSHHHHHHHH....HHH...-SEEEESSH.HHHHHHHHGGGGG..............GG-EEEEEEE... CS
  SBP_bac_11   5 aagslaaalrelaaaF.eahtgvkvevsaggsgklarqi....adga.rpDvwipassawlellaaaglvqa..............esavplassp... 80 
                 ++++  ++ ++  +aF +a+++++ve +  g  +l++ +     +g+ +pDv++ a++  l +l++++ + a              ++ +++ +++   
  EHU01965.1  38 TSQA-PEIAQQTMDAFkAAYPDIQVEWTRNGTTQLMNVLhtemMSGRvKPDVLLVADAINLGALKKEQQLYAyqdapvghlkpsfyDRDKTFFGTKiia 135
                 4443.556678999**6669*****************66444477779****************9997777777788888888************9888 PP

                 EEEEESTT-TT---SHHHHHHSS-..-EEEE--T-TTTTHH.HHHHGGG...--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH...H CS
  SBP_bac_11  81 lviavpkgnpkkikgwadLlkpgl..klavadPttspsGlaalalleaa...gaqellkalekkvvklgessrqlltaveageadagivyeseakaa.e 173
                  via+++ ++k++ +w++Ll+++   ++a+++   s+++l+ l +  a    g   ++k+l+       ++ +++l+av++g   +g+++  ++++a +
  EHU01965.1 136 TVIAYNTQRAKPVNSWNALLNADNkgQIAMPSSLYSGAALYKLHTDIATpdiG-WNFYKQLAALGIAPQGGNGPALKAVASGMDKYGVITDADIIRAkK 233
                 8********************87734788888888888775443322223332.4499***99977788889**********99999999998888846 PP

                 STTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT CS
  SBP_bac_11 174 ngdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrkyG 228
                 +g ++++vy++eg+   +++ p+a++k+ ++  aA+aF++fL+s+++q++++++G
  EHU01965.1 234 QGSPIDLVYPKEGVS--YVTEPVAIMKSVHNLPAAKAFVNFLLSEQGQKLVADQG 286
                 888***********9..6**********************************999 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   5.3   1.9e-19   4.3e-16       9     315 .]      44     280 ..      37     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 1.9e-19
                 HHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE CS
   SBP_bac_1   9 alqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskv 106
                 + q+   +af++++p+i+Ve++  g+ +l++ l + +++G+  +Dv  v d   ++ l+k+   + l +y +a  +  ++ ++d++   ++ ki++   
  EHU01965.1  44 IAQQTM-DAFKAAYPDIQVEWTRNGTTQLMNVLHTEMMSGRVKPDVLLVaDAINLGALKKE---QQLYAYQDAPVGHLKPSFYDRDKTFFGTKIIA--- 135
                 444445.77********************************666*****888888888666...66666666777777788888888888888877... PP

                 ESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHHH CS
   SBP_bac_1 107 lyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvklya 205
                         ++++YN++  ++       +W+ l+ a+ k   + ++         +sg a y                   +l ++++  ++++  +++ 
  EHU01965.1 136 --------TVIAYNTQRAKPVN-----SWNALLNADNKGQIAMPSS-------LYSGAALY-------------------KLHTDIATPDIGWNFYKQ- 194
                 ........5**********666.....***9998888888888887.......22222222...................335555555555555555. PP

                 HHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHHH CS
   SBP_bac_1 206 vanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpeaAkkF 304
                         +   a+  ++  al+++++G    ++++  ++  a+    k++ ++d  +pke + +              ++ ++ai+k+  n  aAk+F
  EHU01965.1 195 ------LAALGIAPQGGNGPALKAVASGMDKYGVITDADIIRAK----KQGSPIDLVYPKEGVSY--------------VTEPVAIMKSVHNLPAAKAF 269
                 ......33333333333333344454444444455544433333....33444444444443344..............******************** PP

                 HHHHTSHHHHH CS
   SBP_bac_1 305 ldfllspeaqa 315
                 ++flls+++q+
  EHU01965.1 270 VNFLLSEQGQK 280
                 ********996 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   3.6   1.9e-19   4.3e-16       3     270 ..      49     296 ..      47     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.9e-19
                 HHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT.--TS.----EEEEEEE-EEEE CS
   SBP_bac_8   3 akefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaav.gydgklygvPyasetpyvliy 99 
                 +++f++++ +++v+ +  ++ +l++ l +++ +g +   ++++a++ +l++l++e+ l++  d     +l   + ++ + d+    +   +   +v++y
  EHU01965.1  49 MDAFKAAYpDIQVEWTRNGTTQLMNVLHTEMMSGRVKPDVLLVADAINLGALKKEQQLYAYQDA-PVGHL---KPSFyDRDK--TFFGTKIIA-TVIAY 140
                 799*******************************964435777778899999999999998873.34445...444423466..666666666.6**** PP

                 EHHHHHHS.---BHHHHHHHHHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE.-S..--SSTTTTTSBSEEEE-T CS
   SBP_bac_8 100 nkdllekaedpktwdellaaakklkgkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngkty.dtgadavsefanGevaftings 197
                 n+  ++   ++ +w +ll   +++kg++++p + +    aal+    k  +d    ++ +  ++++k+l + g  + + +  a +++a+G+  +++  +
  EHU01965.1 141 NTQRAK---PVNSWNALLN--ADNKGQIAMPSSLY--SGAALY----KLHTDI---ATPDIGWNFYKQLAALGIAPqGGNGPALKAVASGMDKYGVITD 225
                 ****99...**********..********876554..333333....344444...344789***********999435578889************** PP

                 THHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT CS
   SBP_bac_8 198 wdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal 270
                 +di+ a+k+g ++  ++pk+g+ + ++++a++k+  n   aA++F+++l+s+++q+  a+ +g  pv + +a+
  EHU01965.1 226 ADIIRAKKQGSPIDLVYPKEGVSYVTEPVAIMKSVHNLP-AAKAFVNFLLSEQGQKLVAD-QGNRPVDDRVAA 296
                 ***************************************.6***************7777.777777666665 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     3e-06    0.0067       5      66 ..      27      93 ..      23     117 .. 0.79
   2 ?    3.3   0.0     0.024        54     255     282 .]     255     277 ..     196     277 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
  PBP_like_2  5 eatsvgeifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngd......vdfagsdr 66
                +++  g++++ +s +p++  ++ +daf+ a+p+++v+++  G+++ +++l ++        d+ ++ +
  EHU01965.1 27 ADQPTGKLVVYTSQAPEI-AQQTMDAFKAAYPDIQVEWTRNGTTQLMNVLHTEMmsgrvkPDVLLVAD 93
                444444577777777765.577889*************************998888888866666655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.024
  PBP_like_2 255 iivyqpyayhgnnaalakaFldyllsde 282
                 +i+++ +     n ++akaF+++lls++
  EHU01965.1 255 AIMKSVH-----NLPAAKAFVNFLLSEQ 277
                 5666655.....389***********85 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.3e-06    0.0052      36     118 ..      23     111 ..      14     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
  Glyco_tran_WecB  36 lleraeeeglrvfllGg.kpevlekaaerlrekypglriagthdgykeeeeeaiiea..inaskpdlllvg....lGapkqEkwiarlke 118
                      l ++a++   +++++ + +pe+++++ +++++ yp++++  t++g  ++  + + ++    + kpd+llv+    lGa k+E+ ++ +++
       EHU01965.1  23 LAQAADQPTGKLVVYTSqAPEIAQQTMDAFKAAYPDIQVEWTRNGT-TQLMNVLHTEmmSGRVKPDVLLVAdainLGALKKEQQLYAYQD 111
                      4445544455555555549**************************7.3333333333003455******9877779999*9999999988 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     5e-05      0.11       7      51 ..      33      75 ..      26      79 .. 0.81
   2 ?   -2.1   0.0       0.9     2e+03     192     206 ..     261     275 ..     254     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5e-05
                    EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHH CS
  LysR_substrate  7 rLrigapptlaryllppllarfraryPevelelvegdseelldll 51
                    +  + + ++ a+ +  + + +f+a+yP++++e + + +++l + l
      EHU01965.1 33 K--LVVYTSQAPEIAQQTMDAFKAAYPDIQVEWTRNGTTQLMNVL 75
                    4..45556678999***********************99999866 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.9
                     CCHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflre 206
                     +  pa++af++fl++
      EHU01965.1 261 HNLPAAKAFVNFLLS 275
                     6779********976 PP

>> DUF2880  Protein of unknown function (DUF2880)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.51       9      57 ..      19      68 ..      12      75 .. 0.68
   2 ?   -1.2   0.0       1.1   2.5e+03      33      48 ..     253     267 ..     248     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
     DUF2880  9 asaalaavqvelgkrrGk.....deaPeaPvacmkavkaalPnPdsfkwvrGka 57
                a +ala +     ++ Gk      +aPe     m+a kaa P+  +  w r  +
  EHU01965.1 19 AGSALAQAA---DQPTGKlvvytSQAPEIAQQTMDAFKAAYPDI-QVEWTRNGT 68
                555555443...3444443333379*****************85.778887443 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
     DUF2880  33 PvacmkavkaalPnPd 48 
                 Pva mk+v   lP  +
  EHU01965.1 253 PVAIMKSVHN-LPAAK 267
                 9999*99974.66555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2594.09
//
Query:       EHU01966.1  [L=568]
Description: phospholipid/glycerol acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-24   86.4   0.0    4.3e-24   85.2   0.0    1.7  1  Acetyltransf_5   Acetyltransferase (GNAT) domain
    3.4e-11   42.9   0.0      7e-11   41.9   0.0    1.5  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   4.8e-28   4.3e-24       1     100 [.     322     422 ..     322     423 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 4.8e-28
  Acetyltransf_5   1 LRyevFreemgaegeaaapeldiDefDavcdhllvideae.evVGtyRllrpdeae...rlegfysesefd.lsklaalrrrllElgRscvhpey 90 
                     LR+ +Fr++++++g++    +d+D++D+ + hl+++d+ae e+VG+yR+++  e+    ++eg+ys+s+f+  +++ ++ r+ +ElgRs+++p+y
      EHU01966.1 322 LREIAFRAVGEGSGRR----RDLDSYDDDYYHLILWDDAElEIVGAYRFIPGGEQLerrGMEGLYSHSLFHyDERMIPILRQGIELGRSFIQPAY 412
                     8***************....****************999999*********9999977667**********999********************* PP

  Acetyltransf_5  91 Rnkralellw 100
                     ++kr+l++lw
      EHU01966.1 413 WGKRGLDYLW 422
                     *********9 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   7.8e-15     7e-11       6     133 ..      67     190 ..      62     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 7.8e-15
  Acyltransferase   6 glenlpekgpailvaNHqsy.lDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvviF 98 
                       le++p+ gp+++vaNH    +D + l ++   s+++r+v+i+a++ +  ++ l+ lm  ++ i  +     + +++l+++++ l+++ +++iF
       EHU01966.1  67 DLEQIPPRGPVVVVANHPLGtIDGMALLHAI--SQVRRDVKIVANRLIMLLEPLNSLMLPVDNIGNR-----TSRQQLQHMQQHLNNQGVLIIF 153
                      6899*************9988****999999..44569*********99999999999888887544.....46679***************** PP

  Acyltransferase  99 PEGtrsregel....lpfkkGlvrlaakakkgvpivPva 133
                      P G +sr ++     ++++ ++ rlaaka    p+vPv 
       EHU01966.1 154 PAGEVSRLTSAgvrdREWHHSFLRLAAKA--RAPLVPVH 190
                      ***888886666689**************..******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4104.03
//
Query:       EHU01967.1  [L=200]
Description: hypothetical protein CKS_0440 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-08   33.6   0.1    4.8e-08   32.6   0.1    1.4  1  Cupin_2       Cupin domain
    1.5e-05   24.6   0.0    2.7e-05   23.8   0.0    1.3  1  Cupin_1       Cupin
     0.0067   16.2   0.0     0.0082   15.9   0.0    1.2  1  Cupin_6       Cupin
  ------ inclusion threshold ------
      0.036   13.8   0.0       0.07   12.8   0.0    1.5  1  Cupin_3       Protein of unknown function (DUF861)
      0.062   13.2   0.1      0.094   12.6   0.1    1.2  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   1.3e-11   4.8e-08      13      62 ..      85     137 ..      79     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.3e-11
                 EECSSSEEEEEEEEESEEEEEEC...TEEEEEETTEEEEE-TT-EEEEEE-SS CS
     Cupin_2  13 shrHpgedeffyVleGegeltvd...geeveleaGdsvyfpagtpHrfrNtgd 62 
                 +h+Hp++ e++ V eG +e+  +   g+ ++l+aGd+v++pag+ Hr + +++
  EHU01967.1  85 MHYHPNTHELLGVAEGWAEVLFGgdsGRMITLRAGDAVLIPAGVGHRQVSASE 137
                 7********************8845666******************9887775 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.4e-09   2.7e-05      48     111 ..      85     142 ..      83     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.4e-09
                 EEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEE CS
     Cupin_1  48 PhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaiv 111
                 +hyhpn++e++ v +G +   +++ g+  + +  +lr+Gd++ +Pag+ h q++   ++ ++ v
  EHU01967.1  85 MHYHPNTHELLGVAEGWAE--VLFGGD--SGRMITLRAGDAVLIPAGVGHRQVSA--SEDFVAV 142
                 6***************999..455554..334455******************99..4555444 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.3e-06    0.0082      34      79 ..      92     138 ..      68     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.3e-06
     Cupin_6  34 lalhvvlrGscwli.dpasgepvrLsagdvvllpggephvladspgt 79 
                  +l+ v++G + +   ++sg+ ++L+agd+vl+p g +h+  ++ ++
  EHU01967.1  92 HELLGVAEGWAEVLfGGDSGRMITLRAGDAVLIPAGVGHRQVSASED 138
                 6788899*******77777799*****************98887773 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     2e-05      0.07      25      60 ..      91     128 ..      85     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
                 SEEEEEEEECEEEEEETTTEE...EEEETTEEEEE-TTE CS
     Cupin_3  25 edEfcyileGevkvtpegget...velraGDlvvlpkgl 60 
                 ++E+  + eG  +v   gg     ++lraGD+v +p+g 
  EHU01967.1  91 THELLGVAEGWAEVLF-GGDSgrmITLRAGDAVLIPAGV 128
                 5677778888888888.5555556*************97 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.6e-05     0.094      13      67 ..      79     138 ..      75     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
                   T-SEEE.ETT-.SEEEEEEEEE-EEEEETTEE...EEE-TT-EEEE-TTS-EEEEE-TTS CS
  AraC_binding  13 dhsfpp.hvhd.eyvihyvteGtgrlrlngrt...ydlgpGdlfLlppgepHdyesdsed 67 
                   d+ fp+ h h+ ++++  v+eG + + ++g       l++Gd +L+p g+ H+  s+sed
    EHU01967.1  79 DQIFPYmHYHPnTHELLGVAEGWAEVLFGGDSgrmITLRAGDAVLIPAGVGHRQVSASED 138
                   5667777999999*************998876677*****************99998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1560.47
//
Query:       EHU01968.1  [L=299]
Description: periplasmic binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-33  115.7   0.0    2.3e-33  115.5   0.0    1.1  1  SBP_bac_3       Bacterial extracellular solute-binding protei
     0.0013   18.1   0.0     0.0023   17.3   0.0    1.3  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.081   12.9   0.0       0.11   12.4   0.0    1.3  1  NMT1            NMT1/THI5 like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   3.9e-37   2.3e-33       1     224 [.      56     282 ..      56     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 3.9e-37
                 EEEEE-S.-BTTTBEE-T.TS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSH CS
                 xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvda.dypPfsykde.ngeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdas 97 
                 l+v+++a ++pP       n +  G d+d+a+ +a++lg+k+++vp sw++   ++++g++D+a+ +i++t+eR++k+dF + y   + ++ v+++  s
  EHU01968.1  56 LTVATSAiHSPPLALLASdNVTRIGSDPDIARLLADSLGLKLKLVPASWEDWPLGIRAGRYDVAMFNIAVTEERKQKFDFAT-YRADNHAFSVKAD--S 151
                 6888888899*****999888999*********************99**********************************6.9999999999954..5 PP

                 GTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.......TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  98 kissiksladLkgkkvgvqagstaeellkeelkk.......gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyai 189
                   + i+s+ad +gk++ v  g+++e +l ++ ++        ++ ++  ++++a++ L +gr+d++++  +v+a+ v+ ++  k+v    +      ++
  EHU01968.1 152 PLRAITSPADVAGKRIIVASGTNQERILLNWDAQnrakglpPVTPIYLTDDASATLYLLSGRADVMFGPHSVAAWKVASRGQTKLVG---QGPFRAWVA 247
                 789************************998655576677654455666888889999*****************************9...444444555 PP

                 EEETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 190 avrkgdseLrkainkalaelkadgtlakisekWfg 224
                 +  k+++ L +a++ al+  +a g++++  ++W+ 
  EHU01968.1 248 VTTKKGNGLAAALQTALDGTIAGGQYQQVLQRWGE 282
                 56677789*************************75 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.9e-07    0.0023      25     199 ..      85     262 ..      83     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.9e-07
                     HHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEE...EEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSECGGGGCTSEEEEESTTSTH CS
  LysR_substrate  25 larfraryPevelelvegdseelldllaegelDla...iragppedsglearpLaeeplvlvaspdhpLar.gepvsledLadeplilleegsgl 115
                     +ar++a   +++l lv +++e+   ++++g++D+a   i+  +++ + +++     + +   + +d pL +     s++d+a+ + i+ + g+  
      EHU01968.1  85 IARLLADSLGLKLKLVPASWEDWPLGIRAGRYDVAmfnIAVTEERKQKFDFATYRADNHAFSVKADSPLRAiT---SPADVAGKRIIVAS-GTNQ 175
                     6788888899999*******999999*********44445555599999999999***********9987744...999*********65.6666 PP

                     HHHHHHHHHCT...TEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHHHHHH CS
  LysR_substrate 116 rdlledalrea...glkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelspavra 199
                      + l+++ +++   gl+p ++ + +++++a l l +    + + p+s+++  +a+ +   l+ ++ p+++ +++ ++kg  l +a+++
      EHU01968.1 176 ERILLNWDAQNrakGLPPvTPIYLTDDASATLYLLSGRADVMFGPHSVAAWKVASRGQTKLVGQG-PFRAWVAVTTKKGNGLAAALQT 262
                     6666666555555599999999**************************98777665555355555.5555555556666666666665 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05      0.11      74     146 ..     142     219 ..      94     237 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
                 -EEEEEECCC-...-SSGGGGTTSEEEE-S.-TTHHHHHHHHHHHTT-.-GGG-EEEE-.TT-HHH.HHHCTSSSEEEC CS
        NMT1  74 lsglivlkdsg...ikspkDLkGkrigyvg.spfekallkallakdgg.dpsdvtlvnvggtslak.alltgkvDaaig 146
                 + ++ v++ds+   i+sp+D +Gkri +   ++ e++ll+   a++ +     vt +  + +  a+ +ll+g++D+++g
  EHU01968.1 142 NHAFSVKADSPlraITSPADVAGKRIIVASgTNQERILLN-WDAQNRAkGLPPVTPIYLTDDASATlYLLSGRADVMFG 219
                 556666777655569***********97772555666654.33333332445566666644444445999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2371.80
//
Query:       EHU01969.1  [L=264]
Description: ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-35  122.3   0.0    2.7e-35  121.9   0.0    1.2  1  ABC_tran      ABC transporter
    7.3e-17   62.1   0.3    1.1e-08   35.3   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.6e-08   34.3   0.0      0.001   18.6   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    1.8e-05   24.3   0.1    4.1e-05   23.2   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
    5.1e-05   23.7   0.1    0.00012   22.5   0.1    1.7  1  AAA_16        AAA ATPase domain
    5.6e-05   23.0   0.0     0.0012   18.7   0.0    2.0  2  AAA_15        AAA ATPase domain
    6.1e-05   23.6   0.0    0.00011   22.8   0.0    1.3  1  AAA_23        AAA domain
    6.2e-05   21.9   0.0      0.026   13.2   0.0    2.0  2  AAA_13        AAA domain
    0.00011   21.1   0.1       0.26   10.0   0.0    2.9  2  ABC_ATPase    Predicted ATPase of the ABC class
    0.00021   21.3   0.0    0.00035   20.5   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
    0.00038   20.5   0.0     0.0011   18.9   0.0    1.7  2  ATPase_2      ATPase domain predominantly from Archaea
    0.00071   19.9   0.2     0.0031   17.8   0.0    2.0  2  AAA_22        AAA domain
     0.0067   16.5   0.0       0.19   11.8   0.0    2.3  2  AAA_14        AAA domain
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.037   13.6   0.0    1.8  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.013   15.8   0.1        1.2    9.4   0.1    3.0  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.014   15.1   0.0      0.031   14.0   0.0    1.5  1  AAA_30        AAA domain
      0.015   14.9   0.0      0.026   14.1   0.0    1.3  1  AAA_27        AAA domain
      0.017   15.1   0.0      0.041   13.8   0.0    1.6  1  NACHT         NACHT domain
      0.021   15.0   0.0       0.04   14.1   0.0    1.8  1  AAA_33        AAA domain
      0.027   15.0   0.1       0.14   12.7   0.1    2.2  1  AAA_18        AAA domain
      0.035   13.7   0.1          1    8.9   0.0    2.5  3  CobU          Cobinamide kinase / cobinamide phosphate guanyl
      0.042   12.7   0.1      0.079   11.7   0.0    1.4  2  Adeno_IVa2    Adenovirus IVa2 protein
      0.066   12.4   0.0        0.1   11.8   0.0    1.2  1  NB-ARC        NB-ARC domain
      0.067   12.9   0.0       0.13   11.9   0.0    1.5  1  AAA_24        AAA domain
      0.071   13.0   0.0       0.16   11.9   0.0    1.5  1  Rad17         Rad17 P-loop domain
        0.1   12.0   0.1       0.28   10.5   0.0    1.7  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.14   12.4   0.0       0.35   11.1   0.0    1.7  1  AAA_28        AAA domain
       0.15   12.2   0.1        1.1    9.4   0.0    2.2  2  MMR_HSR1      50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   4.2e-38   2.7e-35       1     137 []      31     189 ..      31     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 4.2e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG............B-HHHCCHCEEEE-SS--S-TTSBHHHH........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke............qeleslrkeigvlpqepqlfpeltvren........ 79 
                 l++vsl+l++g++++i+G++G+GKStLl+++ +l++ +eG i++dg+ + +            + + + r ++g+++q+ +lfp+ltv en        
  EHU01969.1  31 LDDVSLELEPGSVTVILGPSGSGKSTLLRTINHLERVDEGFIQIDGEYIGYqrrgntlyelkaRAILRQRVNVGYVFQNFNLFPHLTVLENlieapiah 129
                 79***********************************************9999********877777888899***********************999 PP

                 ......HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ......xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ......esdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                       e       + ++l+++gl +++d      p++LSgGq+qr+a+aral+ +p+++l+DEpt+
  EHU01969.1 130 rqlskrE---AiirAGELLETVGLRHKADAW----PRHLSGGQQQRIAIARALMLQPRVMLFDEPTS 189
                 9764333...244477888888888844444....6*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1     3e-08   1.9e-05       1      53 [.      43      82 ..      43     140 .. 0.69
   2 !   35.3   0.0   1.7e-11   1.1e-08     235     297 ..     159     218 ..     152     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlyd 53
                ++v+ Gp gsGKS+LL+++ +l r+               g++ i++++ +y+
  EHU01969.1 43 VTVILGPSGSGKSTLLRTINHLERV-------------DEGFIQIDGEYIGYQ 82
                79*****************999765.............223333333333333 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 1.7e-11
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 r+lS G+++ +a++ al  ++   ++ l+DEp + L+P+l+ ++l+++k+l+r g+ ++++TH
  EHU01969.1 159 RHLSGGQQQRIAIARALMLQP---RVMLFDEPTSALDPELVGEVLDVIKKLARSGTTLVIVTH 218
                 799******999999999988...*************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.4e-05     0.028      19      46 ..      35      63 ..      24      66 .. 0.77
   2 !   18.6   0.0   1.6e-06     0.001     135     207 ..     153     228 ..      79     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.4e-05
                EEETTS.SEEEEEESTTSSHHHHHHHHHH CS
                xxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 19 ilpfsk.sftaivGpNGSGKsnlldAilF 46
                +l++++ s+t+i+Gp GSGKs ll  i +
  EHU01969.1 35 SLELEPgSVTVILGPSGSGKSTLLRTINH 63
                4555542589**************99976 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.6e-06
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                 +       LSgG+++ +a+a  +   + +p+ ++l+De  +aLD + v +v +++k+   + + +++++++ ++ +++  
  EHU01969.1 153 KadawprHLSGGQQQRIAIARAL---MLQPR-VMLFDEPTSALDPELVGEVLDVIKKLARSgTTLVIVTHEVGFAREVAD 228
                 36666669*******99999775...55666.569*********************988774777777888777766533 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   6.4e-08   4.1e-05      13      39 ..      32      58 ..      29      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.4e-08
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ ++e+++ ++t++ GpsGsGKSTll
  EHU01969.1 32 DDVSLELEPGSVTVILGPSGSGKSTLL 58
                66788999888***************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.9e-07   0.00012      24      87 ..      40     102 ..      27     220 .. 0.53

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.9e-07
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd.ggif.lrgkcdqlesa..ipysalaqalareellrqlld 87 
                 p +++++ G+sG+GKs+l+r++  +le+  +g+  + g++  +++   +    l ++  ++ +lrq  +
  EHU01969.1  40 PgSVTVILGPSGSGKSTLLRTIN-HLERVdEGFIqIDGEYIGYQRRgnT----LYELK-ARAILRQRVN 102
                 347899*****************.5666522333477777666333222....23333.2244444433 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.8e-06    0.0012      12      74 ..      29      88 ..      28      97 .. 0.85
   2 ?    2.4   0.0      0.17   1.1e+02     325     364 ..     180     218 ..     162     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.8e-06
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifenises 74
                ++l+dv+++l++  +tv+ G+ +sGKS++l+ ++ +   +    + +i i+ e + +++  ++ 
  EHU01969.1 29 KALDDVSLELEPGsVTVILGPSGSGKSTLLRTINHLERVD----EGFIQIDGEYIGYQRRGNTL 88
                7899********99*******************9998877....77788888777777666655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
      AAA_15 325 villiEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                  + l++EP   L p++  ++ + +k+la+++   ++i TH
  EHU01969.1 180 RVMLFDEPTSALDPELVGEVLDVIKKLARSGT-TLVIVTH 218
                 5789***************************7.8888888 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.7e-07   0.00011       8      39 ..      26      61 ..      23      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.7e-07
      AAA_23  8 rsf...rdqeidFskg.ltlItGpNGaGKTTildAi 39
                +++   +d+++++++g +t+I Gp G+GK+T+l+ i
  EHU01969.1 26 GKLkalDDVSLELEPGsVTVILGPSGSGKSTLLRTI 61
                55555589999999954****************977 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0033       2.1      17      48 ..      42      71 ..      32     115 .. 0.80
   2 !   13.2   0.0   4.1e-05     0.026     525     581 ..     177     230 ..     166     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0033
      AAA_13 17 riNliYGwNGaGKTtLSrllrslelgetepkf 48
                 + +i G  G+GK+tL r ++ le+    + f
  EHU01969.1 42 SVTVILGPSGSGKSTLLRTINHLERV--DEGF 71
                567899****************9763..3444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.1e-05
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkknt 581
                  + ++  +D P S LD + +  v   ik+ +    +   l i TH + f +ev +n+
  EHU01969.1 177 LQPRVMLFDEPTSALDPELVGEVLDVIKKLA---RSGTTLVIVTHEVGFAREVADNV 230
                 5789**************************9...88899**************9875 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00041      0.26     244     265 ..      40      62 ..      35      65 .. 0.87
   2 !    6.6   0.0    0.0045       2.9     324     414 ..     162     236 ..     154     259 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00041
                 SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAle 265
                  G vt+I G+   GKsTLL+ ++
  EHU01969.1  40 PGsVTVILGPSGSGKSTLLRTIN 62 
                 455*****************997 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0045
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETT CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeey 414
                 SG   q  +i++al ++ +++L+DE tsA           elv         ++d +++l ++ g ++++v+  +g   +vAd+v+ m + 
  EHU01969.1 162 SGGQQQRIAIARALMLQPRVMLFDEPTSALD--------PELV-------GEVLDVIKKL-ARSGTTLVIVTHEVGFAREVADNVVFMVDG 236
                 8888899999999999999999999999842........3444.......2345555555.555666666666666666666666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.5e-07   0.00035      86     121 ..      27      63 ..       5      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.5e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  + ++l++++ +l+  +++v++G+SG GKStL+ +++ 
   EHU01969.1  27 KLKALDDVSLELEPgSVTVILGPSGSGKSTLLRTINH 63 
                  4577888999999889***************999876 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-06    0.0011      15      44 ..      36      64 ..      24     135 .. 0.84
   2 ?   -1.2   0.0       2.4   1.6e+03     141     169 ..     195     222 ..     175     234 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-06
    ATPase_2 15 lerepneiyfiYGpegsGKtaLlkeiienl 44
                le ep ++ +i Gp gsGK++Ll+ i   l
  EHU01969.1 36 LELEPGSVTVILGPSGSGKSTLLRTIN-HL 64
                7999*******************9864.33 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
    ATPase_2 141 lvkeLlnliesltkekhlcvviclsSegl 169
                 lv e l++i++l  +  +++vi++ + g 
  EHU01969.1 195 LVGEVLDVIKKLA-RSGTTLVIVTHEVGF 222
                 4555555554432.233333444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.8e-06    0.0031       5      29 ..      41      65 ..      37     101 .. 0.81
   2 ?   -0.7   0.0       2.5   1.6e+03      59     104 ..     143     192 ..     129     222 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.8e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                 +++v+ G+sG+GK+tllr++ +  
  EHU01969.1 41 GSVTVILGPSGSGKSTLLRTINHLE 65
                6789****************98876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.5
      AAA_22  59 ellralglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr 104
                 ell+ +gl++ka  +  ++l   + ++ + ara    +++++ DE    l+
  EHU01969.1 143 ELLETVGLRHKA-DAWPRHLSgGQQQRIAIARALmlqPRVMLFDEPTSaLD 192
                 566666666666.33333333222222222222245666777777666553 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0    0.0003      0.19       4      45 ..      43      83 ..      41     107 .. 0.72
   2 ?    2.2   0.0      0.27   1.7e+02      51     109 ..     198     252 ..     170     262 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0003
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkk 45
                + vi G+  +GK+tll+++ + +   +e ++ i+ +   +++
  EHU01969.1 43 VTVILGPSGSGKSTLLRTINHLER-VDEGFIQIDGEYIGYQR 83
                789************998854433.56888888877766654 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.27
      AAA_14  51 kllelileklkeekktylflDEiqevpewekalkslvdegknldvivtGSnskllskei 109
                 ++l++i++++++  + +++  E+  ++e+ + +  +vd    ++++  GS++++l +  
  EHU01969.1 198 EVLDVIKKLARSGTTLVIVTHEVGFAREVADNVVFMVD----GKIVEQGSSAQVLNHPR 252
                 45566666543324444666777777888888888877....36999999999997754 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.9e-05     0.037       2      21 ..      43      62 ..      42      81 .. 0.85
   2 ?   -1.7   0.0         3   1.9e+03     108     127 ..     223     241 ..     206     253 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.9e-05
                EEEEEESTTCCHHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhll 21
                vtv+ G+ GsGK+tLl+++ 
  EHU01969.1 43 VTVILGPSGSGKSTLLRTIN 62
                89**************9986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3
                 HCCCECEEEEEEETTTH.CC CS
        cobW 108 sdltldavvavvDaknleae 127
                 ++  +d vv++vD+k +e +
  EHU01969.1 223 AREVADNVVFMVDGKIVE-Q 241
                 566788999999996663.3 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.36   2.3e+02      69      81 ..      67      79 ..      62      82 .. 0.89
   2 ?    9.4   0.1    0.0019       1.2      63      89 ..     178     204 ..     149     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.36
     SbcCD_C 69 LDEAFsklDeesi 81
                 DE+F ++D+e+i
  EHU01969.1 67 VDEGFIQIDGEYI 79
                5*********987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0019
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 ++r++++DE  s lD+e + ++l++++
  EHU01969.1 178 QPRVMLFDEPTSALDPELVGEVLDVIK 204
                 4899******************99987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.9e-05     0.031      18      41 ..      41      64 ..      34      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.9e-05
      AAA_30 18 drvavltGpAGtGKttalkalrea 41
                  v+v+ Gp G+GK+t+l++++++
  EHU01969.1 41 GSVTVILGPSGSGKSTLLRTINHL 64
                5699***************99876 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.1e-05     0.026      10      49 ..      24      64 ..      22      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.1e-05
      AAA_27 10 ryGkft...drsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                r+Gk++   d sl+++    ++++i+Gp  +GKst+lr i++l
  EHU01969.1 24 RFGKLKaldDVSLELE--PGSVTVILGPSGSGKSTLLRTINHL 64
                7887642216666666..899******************9987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-05     0.041       2      21 ..      43      62 ..      42      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                + ++ G++GsGK+tLl+ + 
  EHU01969.1 43 VTVILGPSGSGKSTLLRTIN 62
                689**************996 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.2e-05      0.04       1      19 [.      43      61 ..      43     217 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.2e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                ++++ G++GsGKstl++ +
  EHU01969.1 43 VTVILGPSGSGKSTLLRTI 61
                67889***********974 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00021      0.14       2      22 ..      45      65 ..      45     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00021
      AAA_18  2 lltGtpGvGKttlakeLskrl 22
                ++ G++G+GK+tl + ++ ++
  EHU01969.1 45 VILGPSGSGKSTLLRTINHLE 65
                589************996554 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.2   1.3e+02       1      14 [.      44      57 ..      44      67 .. 0.86
   2 ?    8.9   0.0    0.0016         1      88     128 ..     182     222 ..     158     231 .. 0.80
   3 ?   -2.4   0.0       4.7     3e+03     153     166 ..     225     238 ..     223     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.2
        CobU  1 ilvtGgarSGKSef 14
                ++++G++ SGKS++
  EHU01969.1 44 TVILGPSGSGKSTL 57
                579*********86 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
        CobU  88 llleeeaekveekleeeveellealkelkatvvlVsnEvgl 128
                 +l++e +++ + +l  ev +++++l+++ +t+v+V+ Evg+
  EHU01969.1 182 MLFDEPTSALDPELVGEVLDVIKKLARSGTTLVIVTHEVGF 222
                 5566555557788999999*********************7 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
        CobU 153 aeadevvlvvaGlp 166
                 + ad+vv++v G  
  EHU01969.1 225 EVADNVVFMVDGKI 238
                 5799******9975 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012     0.079      82     107 ..      35      61 ..      19      70 .. 0.81
   2 ?   -3.7   0.0       5.9   3.8e+03     234     256 ..     209     231 ..     203     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Adeno_IVa2  82 nyglqP.viGviyGPtGsGksqllrnl 107
                  ++l+P  + vi GP GsGks llr++
  EHU01969.1  35 SLELEPgSVTVILGPSGSGKSTLLRTI 61 
                 4556664589***************86 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.9
  Adeno_IVa2 234 tgfsvlvvlhnlnPrsdiagnia 256
                  g ++++v h++   +++a+n++
  EHU01969.1 209 SGTTLVIVTHEVGFAREVADNVV 231
                 46788899999999999999986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016       0.1      17      51 ..      39      71 ..      27      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                TSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCB CS
      NB-ARC 17 elqslvvalvGmgGvGKttlakqilnksdevegrF 51
                e++  v  + G  G+GK+tl++ i++  + v++ F
  EHU01969.1 39 EPG-SVTVILGPSGSGKSTLLRTINHL-ERVDEGF 71
                556.466799**************987.7666655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.13       5      22 ..      44      61 ..      41      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      AAA_24  5 iliyGpsgiGKTtlakel 22
                 +i Gpsg+GK+tl++++
  EHU01969.1 44 TVILGPSGSGKSTLLRTI 61
                689*************99 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.16      34      65 ..      30      61 ..      23      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvL 65
                +l+  +Le ++  + +i GPsG gkst ++ +
  EHU01969.1 30 ALDDVSLELEPGSVTVILGPSGSGKSTLLRTI 61
                7888999********************99876 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00044      0.28      41      59 ..      43      61 ..      24      61 .. 0.84
   2 ?   -2.2   0.0       3.3   2.1e+03      74      80 ..     231     237 ..     190     252 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00044
                  SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 41 hllvaGatgsGKStalntL 59
                   ++++G +gsGKSt l+t+
    EHU01969.1 43 VTVILGPSGSGKSTLLRTI 61
                  579**************95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.3
                   EEEE-TT CS
  FtsK_SpoIIIE  74 liliDyk 80 
                    +++D+k
    EHU01969.1 231 VFMVDGK 237
                   2344444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00054      0.35       3      20 ..      45      62 ..      43      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00054
      AAA_28  3 vitGgestGKTtlleaLa 20
                vi+G++++GK+tll+ ++
  EHU01969.1 45 VILGPSGSGKSTLLRTIN 62
                9*************8776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0017       1.1       3      19 ..      45      61 ..      43      80 .. 0.89
   2 ?    0.5   0.0      0.95   6.1e+02      73      84 ..     223     235 ..     144     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
                EEEESTTSSHHHHHHHH CS
    MMR_HSR1  3 aivGrpNvGKStLinal 19
                +i+G + +GKStL++++
  EHU01969.1 45 VILGPSGSGKSTLLRTI 61
                799***********997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.95
                 HHC.TSEEEEEEE CS
    MMR_HSR1  73 lee.adlillvvd 84 
                  +e ad ++++vd
  EHU01969.1 223 AREvADNVVFMVD 235
                 3333677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2021.52
//
Query:       EHU01970.1  [L=308]
Description: permease component of an ABC superfamily amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-18   66.0  18.4    3.4e-18   66.0  18.4    1.8  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0  18.4   1.9e-22   3.4e-18       2     182 ..      74     276 ..      73     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.9e-22
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilp.viillllsaapyvrlirraal 76 
                   +llG l+a   l++++ l+ l  ++i +++slP++v++i+l+ +                    +++i   + +p ++i l+l +a+y   i+r+++
    EHU01970.1  74 LLLGGLLAlarLSSSWLLSSLAWGYIWLFRSLPFIVVLIILYNFSylydtlsigvpfttlswgHFQTINVLGQFPaAVIGLTLVQAAYSAEIIRGGF 170
                   57788888899999999***********************9966699***************9777777788888899999**************** PP

  BPD_transp_1  77 rslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavllln 169
                     +++++veaa alG+s  ++ ++++lP+al+ ii+++++ +++l +g+++++ l+    +  l+ +++++y+ ++      ++g++ ++i++ +l+
    EHU01970.1 171 LGVDHGQVEAASALGLSATRRTFRIILPQALRAIIPTAFNEIISLAKGTAMVYVLA----MPELFYTIQMIYNRNQEVipllMVGAAWYLIITTVLS 263
                   ********************************************************....9999999999999999986666666666666666666 PP

  BPD_transp_1 170 lvadilqrlldpr 182
                   l+   + r+l++ 
    EHU01970.1 264 LIQHSVERWLARS 276
                   6666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2348.84
//
Query:       EHU01971.1  [L=170]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-11   44.2   0.3    2.6e-11   43.8   0.3    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.1e-06   28.6   0.0    1.5e-06   28.2   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      5e-06   26.8   0.0    7.2e-06   26.3   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00061   19.7   0.0    0.00087   19.2   0.0    1.2  1  FR47             FR47-like protein
  ------ inclusion threshold ------
       0.16   11.5   0.0       0.18   11.4   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.3   7.3e-15   2.6e-11      16     117 .]      35     133 ..      19     133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 7.3e-15
                     HHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHH CS
  Acetyltransf_1  16 nedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaair 110
                     +++  e e  e+   +++ ++v e+d e+i++  +++++    ++a++ +++ + + r++Gl+   l++le+ra++ g+++++l++   +  a+r
      EHU01971.1  35 FSRHKEQEKTEWYLPPHGLFIVLERDKEIIAMGAYKPYDA---QTAELKRIWTRGDLRRQGLALVVLKELERRALRAGYQRLFLTTGFRQPEAVR 126
                     34444444334433344455559999*******9999999...9*************************************************** PP

                     HHHHTTE CS
  Acetyltransf_1 111 lYeklGF 117
                     lY+ +G+
      EHU01971.1 127 LYTGHGY 133
                     **76887 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.1e-10   1.5e-06      22     108 ..      43     135 ..      24     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.1e-10
  Acetyltransf_10  22 lrerieegealllvaeeggkivGvielrdgs....hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnaspyavpfYeklGFka 108
                       +e+   ++ l++v+e++++i+ +++++  +    ++ ++  + + r+qG++   l+++e++a ++g++    +t   +p+av++Y  +G+++
       EHU01971.1  43 KTEWYLPPHGLFIVLERDKEIIAMGAYKPYDaqtaELKRIWTRGDLRRQGLALVVLKELERRALRAGYQRlfLTTGFRQPEAVRLYTGHGYEP 135
                      444445778899**********9998855545688***************************999999988666667899***********97 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     2e-09   7.2e-06       2      76 .]      51     135 ..      50     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2e-09
                     TEEEEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEEEEEE....THHHHHHHHHHTTEEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.ae....kgiileqlel....naekaikfYeklGFee 76 
                     +g ++V+e+d++i+ + a++++d   ae++r++++ + r++G++   l+  ++     g++   l l    ++++a+++Y  +G+e+
      EHU01971.1  51 HGLFIVLERDKEIIAMGAYKPYDaqtAELKRIWTRGDLRRQGLALVVLKElERralrAGYQ-R-LFLttgfRQPEAVRLYTGHGYEP 135
                     57899******************99999999*****************9641134555644.2.23322433349**********95 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.4e-07   0.00087      20      78 ..      75     134 ..      57     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.4e-07
                 TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-.EEEEEETT-HHHHHHHHHHT-E CS
        FR47  20 dggelgalqvlpehrrrGlgsrlvkalakeiaergkt.vllvvvasNtpsirlyeklGfe 78 
                 +  el  + ++ + rr+Gl+ ++ k+l ++  ++g++ ++l ++    ++ rly+  G+e
  EHU01971.1  75 QTAELKRIWTRGDLRRQGLALVVLKELERRALRAGYQrLFLTTGFRQPEAVRLYTGHGYE 134
                 6689999*********************99998776527899999*********999997 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     5e-05      0.18     155     214 ..      50     110 ..       3     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5e-05
  GNAT_acetyltran 155 kkGlGvvilkngeivsgasSysvyekgieie.idTkedyrrkgLAtivaaalileclkrgl 214
                       +Gl +v+ +++ei+++     +  + +e + i+T+ d rr+gLA +v ++l +++l+ g+
       EHU01971.1  50 PHGLFIVLERDKEIIAMGAYKPYDAQTAELKrIWTRGDLRRQGLALVVLKELERRALRAGY 110
                      57887888889999998776667777888855*****************999888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1206.76
//
Query:       EHU01972.1  [L=312]
Description: periplasmic binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-37  128.2   0.1    4.6e-37  127.6   0.1    1.3  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.1   2.6e-41   4.6e-37       3     223 ..      67     294 ..      65     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 2.6e-41
                 EEE-S.-BTTTB.EE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   3 vgvda.dypPfs.ykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 v+v a ++pP + + d+n +l G +vd+a+ +a++lg+k+ +vp+sw++   +++sgk+D+ai++it+t++R++k+dF + y + +++++v+++  s i
  EHU01972.1  67 VAVAAlNSPPLTvFSDDNTTLFGSEVDIARLVADSLGLKLNVVPTSWEDWPLGVASGKYDAAITNITVTKARKAKFDFAT-YRKDSLGFYVKTS--SPI 162
                 55555588887526666**************************************************************6.***********54..589 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.......TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk.......gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaia 190
                 +s+++ +d++g ++ v  g+++e++l  + k+         + ++++++++ ++aL++gr+da+++ +++ a+ ++ n++  +v + ++   ++   ++
  EHU01972.1 163 KSLTQAEDIAGLRIIVGSGTNQEAILLAWDKQnqakglkPFTPIYTKDDAAQTLALQAGRADAYFGPNVIGAWKAALNGKTRLVGSvDGGWPKAAHIAV 261
                 ***********************99887555464454432223566777777999******************************98788888888888 PP

                 EETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 191 vrkgdseLrkainkalaelkadgtlakisekWf 223
                   k++s L + +  al+ ++++g ++k  ++W+
  EHU01972.1 262 TVKKGSGLAQPVSTALNGVIQNGAYQKVLDRWG 294
                 88999***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2303.93
//
Query:       EHU01973.1  [L=437]
Description: hypothetical protein CKS_0446 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-68  231.0   1.4    3.4e-68  230.4   1.1    1.4  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   1.1   1.9e-72   3.4e-68       6     312 ..      19     381 ..      16     384 .. 0.89

  Alignments for each domain:
  == domain 1  score: 230.4 bits;  conditional E-value: 1.9e-72
  Bac_luciferase   6 flptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga.......ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatL 93 
                     ++++r+++a+ +as+s++y++++ar+aE+ ++d+++va++++++ ++       ++++tll+ala++Te+++l  +v++ y  +P+++A+q+a+L
      EHU01973.1  19 MSAWRHPAAQADASISFDYAKKIARKAEQGKLDFLFVADGLFINEKSiphflnrFEPLTLLSALAGVTEHLGLVGTVSTSY-SEPFTVARQFASL 112
                     67899999999999*******************************99**********************************.************* PP

  Bac_luciferase  94 dhlsgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg.....................eevdfeGeffsvkgalllprpg 163
                     dhlsgGR+g++++t+  +  +++f++    +h+ ry+ ++E+++v+++lw +                     ++  ++G+ff+v+g+l++ r++
      EHU01973.1 113 DHLSGGRAGWNVVTSPLEGSAKNFSRqqhpEHALRYRIADEYLQVVKGLWDSweedafvrnkesgqffdpaklHTLHHHGDFFQVQGPLNISRTP 207
                     **************************************************5588899***************8888******************9 PP

  Bac_luciferase 164 qgpiP.vyvaaaspaglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraea...raliagld..... 249
                     qg  P ++ a+as++g +laarhad++++++ ++eea++++++++++  + gr+p+d+ +  +++viv++++e++++++   +al+ ++d     
      EHU01973.1 208 QG-WPvIFQAGASDDGKKLAARHADAIFTHQPTREEAQAFYRDVKQQLVKNGRQPDDLHIFQGVSVIVGRDAEDVEQQYqttAALV-SIDdalny 300
                     99.9977788888******************************************************************8854444.55589999 PP

  Bac_luciferase 250 ...........fyaldsegagreaeaa....eiqeeedanlwagaadavpdelvaatal....vGtpeqvaerlaayaeagv 312
                                +y+ld+++++ ++ +       ++e +++++++  +++ ++ ++a++     +Gtp+qva+ l+a+ e+g+
      EHU01973.1 301 lgrffdhhdfsQYPLDAPFPDVGDIGQnsfrSTTDEIKRKAREQGHSLR-QAALEAAMPrplfHGTPAQVADGLQAWFESGA 381
                     99*********88888888888877774443334444444444444443.4444444446888*************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3093.62
//
Query:       EHU01974.1  [L=384]
Description: amidohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-30  106.3   0.4    2.1e-30  106.0   0.4    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.5e-13   49.9   0.0    2.5e-13   49.9   0.0    1.7  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.4   2.4e-34   2.1e-30       1     206 [.      64     368 ..      64     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 2.4e-34
                    EEEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdav 94 
                    +l++++D++p +e + g    f ++++ G+++++G+d +++  l+a+  l++ + +    +g +++lfqp+EE++ +Ga+ ++e g++  e+v+a+
     EHU01974.1  64 ALRADIDALPiHEAS-GV--SFHSRQP-GVMHACGHDLHTAVMLGAALELQTRAHQL---PGRVRILFQPAEEIA-RGARQFIEaGVL--EGVQAI 149
                    69********76666.66..9****88.*****************999999977776...*************99.********8888..69**** PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    f++h e pg+++ g++a + +                                                                           
     EHU01974.1 150 FGMHNE-PGLPS-GTFATRSGafyanadkfviqvtgkgahaahpeqgvdaivvasqiiqalqtltsrsfntldslvlsvtridggktwnvlpgsve 243
                    ****77.****9.**999999*************************************************************************** PP

                    .................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH.TTTE.EEEEEE CS
                    .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxx RF
  Peptidase_M20 116 .................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarff.agip.tvmifg 176
                                                     ++++++  +g+pv +nd++++++ +e+a ++ g++v++   + gg+d++f+ +++p +++ +g
     EHU01974.1 244 fggtarthdlqrraeledrvrtlvehiarasgaQASLSW-YAGPPVLINDAQWAQFTSEVAHDV-GYRVQTADLHLGGEDFAFYlQQVPgAFVSIG 337
                    *******************************97799995.5**********************9.*8877775557********99999455669* PP

                    SSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 177 pgs.glaHspnEyvdledlekgikvlarlle 206
                     gs  + H+     d+++++ ++ ++a+l++
     EHU01974.1 338 SGSdFGLHHAGFTPDEASIAPAAHYFAQLAQ 368
                    9963556655555559999999999999986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   2.8e-17   2.5e-13       8     106 ..     176     272 ..     172     275 .. 0.95
   2 ?   -3.8   0.3       1.3   1.2e+04      19      43 ..     346     369 ..     345     376 .. 0.62

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 2.8e-17
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                  + i v+gk++H++ p+ g++Ai  +++++++l+ ++++    ++l    l+vt i+gG   nv+p+++e+  + R+ + + ++e+++++++++e+ a+
  EHU01974.1 176 KFVIQVTGKGAHAAHPEQGVDAIVVASQIIQALQTLTSRSF--NTLDSLVLSVTRIDGGKTWNVLPGSVEFGGTARTHDLQRRAELEDRVRTLVEHIAR 272
                 57899**********************************88..***************************************************99886 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.3
                 EGG.-TTTTB-HHHHHHHHHHCSCTT CS
   M20_dimer  19 Hsg.apgagaNAieklarllaelede 43 
                 H+g  p+ +  +i  +a+  a+l ++
  EHU01974.1 346 HAGfTPDEA--SIAPAAHYFAQLAQQ 369
                 777666666..666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3017.23
//
Query:       EHU01975.1  [L=333]
Description: luciferase-like monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-29  101.1   3.8    1.1e-28  100.5   3.8    1.2  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   3.8   6.3e-33   1.1e-28      17     245 ..      18     244 ..       6     307 .. 0.73

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 6.3e-33
  Bac_luciferase  17 aasaslrylvelaraaEelGfdavwvaehhggpgga.ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgt..g 108
                     +++a+l+++++la+++E++G++++w+aehh++++ a +++ +l+a++aa+T+rirlg++ ++l  ++P+ +A+ +  L  l++GR++lg+g+  g
      EHU01975.1  18 SPAAALQRTLRLAQQVEKWGYHRFWLAEHHNVEQLAsPSPEVLIAWIAAQTTRIRLGSGGVMLQHYSPYKVAENFNVLASLAPGRIDLGIGKapG 112
                     23367***************************9999*******************************************************9887 PP

  Bac_luciferase 109 gpaveerrfGv.dhderyarlrEfvevlrrlwrgeev.dfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllageppeeaae 201
                     g +  +r+  +  h++    ++E ++ l  +++ +   + + e+     ++ +p p+ +    ++ ++s+++++laa+ +  +++a  +    + 
      EHU01975.1 113 GLPLSTRALQRgVHQDEKGSFAEQLRQLAHWLTPGAAqEDKDET-----LRATPIPARP-AQRFLLGGSEQSAQLAAELGWQFVFAA-HINGDRP 200
                     77777777744578888888889888888888443332333333.....4455555333.3358899999*********96655555.6666677 PP

  Bac_luciferase 202 lierlragaaeagrdpadirvgisltvivadteeeAraea...rali 245
                     l+er  +  +   r     r ++++ v+vad++++A   +   +++ 
      EHU01975.1 201 LLERALKTYSHLTR---GKRALVAVQVVVADSPAQADLLVaglKQFH 244
                     77777776777888...8899***************88874433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2578.64
//
Query:       EHU01976.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-22   80.3   0.0    1.6e-22   79.9   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    8.1e-09   36.0   0.3    2.3e-08   34.5   0.3    1.8  1  HTH_32        Homeodomain-like domain
    1.8e-08   34.0   0.7    8.5e-07   28.6   0.0    3.1  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    2.6  4  HTH_33        Winged helix-turn helix
    4.3e-06   26.6   0.4    1.9e-05   24.6   0.2    2.0  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.089   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
       0.11   13.1   0.1        0.2   12.2   0.1    1.4  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   7.1e-26   1.6e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 7.1e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU01976.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKYLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU01976.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU01976.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU01976.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU01976.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU01976.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?   -1.7   0.1         1   2.3e+03      29      42 ..     208     221 ..     203     222 .. 0.82
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU01976.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU01976.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk l+ +y++++
  EHU01976.1 208 RLLKYLKATYRRAK 221
                 89999999999886 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU01976.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU01976.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU01976.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU01976.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU01976.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU01976.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU01976.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU01976.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2393.01
//
Query:       EHU01977.1  [L=89]
Description: hypothetical protein CKS_0451 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 710.12
//
Query:       EHU01978.1  [L=386]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-29  103.4   0.1    1.6e-29  103.1   0.1    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    3.8e-10   39.6   0.1    8.2e-10   38.6   0.1    1.5  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.1   1.8e-33   1.6e-29       1     204 [.      64     367 ..      64     370 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 1.8e-33
                    EEEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdav 94 
                    ++++++D++p +e  +    p++++ + G+++++G+d ++   l++++ l++ +++    +g +++lfqp+EE+  +Ga+ l++ g++   +v+a+
     EHU01978.1  64 AFRADIDALPiDEAVNV---PWKSQRP-GVMHACGHDIHTSVMLGVAHQLKQQEAAL---PGRVRILFQPAEETF-DGARQLIDaGAL--TGVQAI 149
                    699*******7776655...*****88.**********************9988876...*************75.********7666..59**** PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    f+lh   p+++  g+l  +++                                                                           
     EHU01978.1 150 FGLHNA-PDLPL-GTLRTRPGvfyanvdrftirvlgkgahaarpqegidaiviashivsalqtlparvfsaldtvvlsvtrftagntwnvlpeqve 243
                    ****88.99999.9988888899************************************************************************* PP

                    .................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH.TTTE.EEEEE CS
                    .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxx.xxxxx RF
  Peptidase_M20 116 .................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsg.pggtdarff.agip.tvmif 175
                                                     ++e+  +  g+p+ ln +++++++ + a +  g++ e+   + +gg+d++f+ +++p +++ +
     EHU01978.1 244 legtvrthnatirehmpermtaliqgiasgfgaRAELA-WITGPPALLNTPEWADFALQQAAQS-GYRAERAEIPlMGGEDFAFYlQQVPgAFVSI 337
                    *******************************9779999.5699************998888885.***99999999*********9999945566* PP

                    ESSG.GCTTSTTTEEEHHHHHHHHHHHHHH CS
                    xxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 176 gpgs.glaHspnEyvdledlekgikvlarl 204
                    g  s ++ H+p  + d++ +  +++++ +l
     EHU01978.1 338 GSASeSGLHHPAFNPDEALMGPAVDYFSQL 367
                    *55449999998888888888888888776 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   9.1e-14   8.2e-10       8     100 ..     176     266 ..     172     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 9.1e-14
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHH CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieei 100
                  ++i+v gk++H++ p+ g++Ai ++++++++l+ ++ ++     l +  l+vt + +G+  nv+p+++e++ ++R+ +   +e   e+++++
  EHU01978.1 176 RFTIRVLGKGAHAARPQEGIDAIVIASHIVSALQTLPARVF--SALDTVVLSVTRFTAGNTWNVLPEQVELEGTVRTHNATIREHMPERMTAL 266
                 789*********************************99988..999999***************************87766666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2879.05
//
Query:       EHU01979.1  [L=160]
Description: hypothetical protein CKS_0453 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-58  196.7   0.0    2.1e-58  196.6   0.0    1.0  1  YlaC      Inner membrane protein YlaC
  ------ inclusion threshold ------
       0.25   11.0   1.9       0.43   10.2   1.9    1.4  1  DUF2244   Integral membrane protein (DUF2244)


Domain annotation for each model (and alignments):
>> YlaC  Inner membrane protein YlaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.0   2.3e-62   2.1e-58       1     152 [.       1     152 [.       1     154 [. 0.99

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 2.3e-62
        YlaC   1 mdeikrllteeierinkeekrdnkvrfsskfikkhpylflamlvsylavavlllyspylglaslilltvllillsavllldikPvyrfedidvldlrvC 99 
                 md ik++l++ei+++n+e +rdn +rfs +f+k+hp+l+  m+++y + ++l++ +++lg+ +++  t++++++s ++lldi+P+yrfedid+ldlrvC
  EHU01979.1   1 MDAIKQILIDEINTLNREGRRDNLPRFSFSFLKTHPGLWAVMYLCYGLCVALIFSTDMLGWPAFWFATAFVLVMSFLMLLDINPKYRFEDIDALDLRVC 99 
                 99************************************************************************************************* PP

        YlaC 100 ynGeWyvsrkvseeaieeilsspqvsdevkeeikkllktkgevsfydvyslaf 152
                 ynGeWy+++ v+e+a+++ils p+ +++vk+ i +llk+kgev+fydvy l++
  EHU01979.1 100 YNGEWYYVEPVPEQAVSRILSLPDAPERVKSGITRLLKQKGEVDFYDVYYLTW 152
                 **************************************************997 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   4.8e-05      0.43      13      70 ..      38      95 ..      31     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.8e-05
     DUF2244 13 lllllalalvslvialafllaGawpvlpFaglevlalalafrvsarhardrEeitltd 70
                l+ ++ l+  ++v+ ++ + +  wp + Fa   vl++ + + +  + ++++E+i   d
  EHU01979.1 38 LWAVMYLCYGLCVALIFSTDMLGWPAFWFATAFVLVMSFLMLLDINPKYRFEDIDALD 95
                67777888888888888889999**********************9999999997555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1188.22
//
Query:       EHU01980.1  [L=698]
Description: hypothetical protein CKS_0456 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-71  240.4   0.0    3.4e-71  239.5   0.0    1.5  1  EAL           EAL domain
    2.7e-46  157.2   0.0    4.4e-46  156.6   0.0    1.3  1  GGDEF         Diguanylate cyclase, GGDEF domain
    1.4e-44  150.1  54.1    2.2e-17   63.0   6.1    4.9  5  MHYT          Bacterial signalling protein N terminal repeat


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5   0.0   5.7e-75   3.4e-71       3     238 .]     439     673 ..     437     673 .. 0.97

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 5.7e-75
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 +l +al+n+el+l yQP + + +g ++g+eallrwqhp++gl+sp++flp+ae++g++  +  wv+++a+++l++++ ++  ++ ++++nls+ +++++
  EHU01980.1 439 DLWHALDNDELRLFYQPKYCAPHGPILGFEALLRWQHPQHGLLSPDRFLPIAEKTGMIVNIGGWVINEACRQLHQWHlQG-HQTWSVAVNLSALQFEQS 536
                 6779************************************************************************9774.567888************ PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                  ++++++ +l+ ++++++ L+le+te++++++ ++   ++l +L +lG++ ++ddfgtgyssl yl+rlp   +K+dr ++++le+++e++++v+a++a
  EHU01980.1 537 NLIDTVKLALATHQIPAELLTLEVTETTAMRNPDESV-RILTELTQLGVKASIDDFGTGYSSLLYLKRLPASELKIDRAFVNELEHHSEDATIVSAIVA 634
                 *******999999999999**********99999999.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 la++l++kvvaegVet+eq  +l +lgc+ +QGyll+kp
  EHU01980.1 635 LAQSLQLKVVAEGVETSEQQAFLTQLGCNTLQGYLLGKP 673
                 **************************************9 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   7.3e-50   4.4e-46       1     160 [.     262     417 ..     262     418 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 7.3e-50
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a hD lT+LpNR lle++leq++++a+re++++a++++dld Fk++nd++Gh++GD +L++v+kr+s+ ++   ++aRlggdeF++l++ t+ +   ++
  EHU01980.1 262 ALHDNLTRLPNRILLEDRLEQAINKANRESTQFALMFMDLDGFKAVNDAFGHHIGDSLLISVTKRMSDQMKGYYTLARLGGDEFVLLIEITEPN---DA 357
                 68************************999**********************************************************9999865...99 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 a ++++l++++++p+ +s  +l v++siGi+++ p +ged +el+ +Ad a+y  K++grn
  EHU01980.1 358 AAVADQLVKAVDRPFPISRYDLVVSLSIGIVVY-PGDGEDERELMFNADAAMYHTKNNGRN 417
                 9********************************.6*************************9 PP

>> MHYT  Bacterial signalling protein N terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   3.3   2.4e-05      0.15      21      57 ..       4      40 ..       1      42 [. 0.88
   2 !   63.0   6.1   3.7e-21   2.2e-17       1      59 []      52     110 ..      52     110 .. 0.97
   3 !   60.6   5.9   2.1e-20   1.2e-16       1      52 [.     115     166 ..     115     173 .. 0.94
   4 !   38.3   8.8   1.8e-13   1.1e-09       1      58 [.     183     244 ..     183     245 .. 0.87
   5 ?   -4.1   0.4         3   1.8e+04      36      44 ..     628     636 ..     626     641 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
        MHYT 21 igydpaltalSlliaivasvlAlalavrrrdtrlrll 57
                 +y+  ++++S+l+a++as+ Al +a r++++   ++
  EHU01980.1  4 ASYNSFIVVISVLVAMLASFTALDMAGRVATSTGKVA 40
                579**********************999999887766 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 3.7e-21
        MHYT   1 GlgIwsMHYtGMaAftlpgpigydpaltalSlliaivasvlAlalavrrrdtrlrllgg 59 
                 G+gIw+MH++GM++++l++ ++yd+ ltalS +ia+ as++Al+l+++ +  + rllgg
  EHU01980.1  52 GIGIWAMHFIGMLSMDLNMMMSYDASLTALSAGIAVCASIFALWLVCQGNLPLFRLLGG 110
                 9************************************************9999999876 PP

  == domain 3  score: 60.6 bits;  conditional E-value: 2.1e-20
        MHYT   1 GlgIwsMHYtGMaAftlpgpigydpaltalSlliaivasvlAlalavrrrdt 52 
                 G+gI++MHYtGMaA+ l+ +i+++++++a+S+++a+vasv+Al+la++ r +
  EHU01980.1 115 GCGIVAMHYTGMAALMLSPGIRWNWGWVAASVIVALVASVAALWLAFKLREG 166
                 9*********************************************988765 PP

  == domain 4  score: 38.3 bits;  conditional E-value: 1.8e-13
        MHYT   1 GlgIwsMHYtGMaAftlpgpigydpaltalS....lliaivasvlAlalavrrrdtrlrllg 58 
                 G +I++MHYtGM+A+++p++++    ++       +++++++++l+++l+v+  d+r+++++
  EHU01980.1 183 GAAIAGMHYTGMMAAEFPMGSHTMSSGVNSNwlaiVVTVVTLAILGITLLVSMLDARMQART 244
                 89****************777666666655566678999*******************9987 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 3
        MHYT  36 ivasvlAla 44 
                 iv++++Ala
  EHU01980.1 628 IVSAIVALA 636
                 455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4852.66
//
Query:       EHU01981.1  [L=188]
Description: putative fimbrial subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-21   75.7  13.8    5.8e-21   75.3  13.8    1.1  1  SCPU      Spore Coat Protein U domain


Domain annotation for each model (and alignments):
>> SCPU  Spore Coat Protein U domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3  13.8   3.2e-25   5.8e-21       2     138 ..      26     184 ..      25     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 3.2e-25
        SCPU   2 tatlavsatvaasCtissg........gtldFG..svsapvvaasltss..gtisvtCtngtsytialdgGangsggta.......Rrlksttgaa.yl 80 
                 t+++++++t++++C ++++        g+l+FG  +++  + +a+l ++  + i v+Ct+g+++++++++++ + g++        R+l+ ++ ++  +
  EHU01981.1  26 TGAINATLTLTTGCLVNGQsatsgvnfGSLNFGssAATFGTLNATLVGAagNGIYVRCTTGQTFNVQVTSSNAAPGTVYgtvssapRYLVLGADNTqGI 124
                 7899*****************************663444444444433333778***************9988777766888999****986555559* PP

        SCPU  81 aYnLYqdaarttvwgdgtsvslaattvtgtsqtlpvYgrilaaqqtvp..aGtYtDtvtv 138
                 aY+LY+da++tt++ ++t+ + ++tt  +   ++ +Ygr++  + +++  aGtYtDt++v
  EHU01981.1 125 AYTLYSDASFTTAIANNTNIAPSGTTDPTLGTNYAIYGRVVGGGFNPVipAGTYTDTINV 184
                 ************************99888999*********888888666********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1451.40
//
Query:       EHU01982.1  [L=173]
Description: putative fimbrial subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-29  101.0  10.6    8.9e-29  100.7  10.6    1.1  1  SCPU      Spore Coat Protein U domain


Domain annotation for each model (and alignments):
>> SCPU  Spore Coat Protein U domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7  10.6     5e-33   8.9e-29       2     139 .]      30     170 ..      29     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 5e-33
        SCPU   2 tatlavsatvaasCtissg.....gtldFG...svsapvvaasltssgtisvtCtngtsytialdgGangsggtaRrlksttgaaylaYnLYqdaartt 92 
                 ++t++vsa + a+C is++     gtl+FG    ++++ v+as  +s+ti+++Ct+gt+++++++gG+n++++  R+lk ++++++++Y LY++aa+tt
  EHU01982.1  30 STTFQVSASIVAGCVISGTntgifGTLNFGtqsGLASSSVSASYVQSSTINLACTPGTTLSMTINGGSNYTTA--RNLKLANNTNTIPYYLYSNAAHTT 126
                 579***************************9998999999999999***********************9988..6777777***************** PP

        SCPU  93 vwgdgtsvslaattvtgtsqtlpvYgrilaaqqtvpaGtYtDtvtvt 139
                 ++  +t+v l+++  +++++tlp+Yg  +     ++aG+Y+Dt++vt
  EHU01982.1 127 PIPVNTAVPLSYS--NANNITLPIYGLLQ-LPGPTSAGVYSDTLSVT 170
                 ************8..9************6.999999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1477.65
//
Query:       EHU01983.1  [L=232]
Description: sigma-fimbriae chaperone protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-20   72.1   0.2    5.2e-20   71.6   0.2    1.2  1  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.51   10.7   0.0    1.9  2  LTD       Lamin Tail Domain


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.2   5.8e-24   5.2e-20      12     121 ..      35     144 ..      25     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 5.8e-24
                 ETTSSEEEEEEEE-SSS-EEEEEEEEC.TTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEEEE.SS---SSS-EEEEEEEEEE-----.TCEEEEEEE CS
      PapD_N  12 nadekeasvtvkNtgkepylvqswvdd.gdeeaedekakaspfvvtPPlfrlepgeeqvlRivtagkklpkdrEslfwlnvkeiPpkkkkkekknklql 109
                 + ++k+  + ++N+g++  l+q+++ + ++++++++ ++++++v++PPl+r+epg++q +R+++ + + ++ +E+ +++ ++eiP  +   +++  l++
  EHU01983.1  35 DPEDKASELWLENRGNTTTLMQVRIFAwQQTNNQEQYQTQQQIVASPPLVRIEPGQKQLVRLIK-QIPPAAGQEMAYRVVLDEIPTPRAVGDNQAGLNF 132
                 5678999********************877778888888889*********************9.555599**************98866899****** PP

                 EEEEEEEEEEEE CS
      PapD_N 110 alrsriklfyrP 121
                 ++r++++lf+  
  EHU01983.1 133 QMRYSVPLFVYG 144
                 *********965 PP

>> LTD  Lamin Tail Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.17   1.5e+03      35      64 ..      56      91 ..      18     110 .. 0.61
   2 ?   10.7   0.0   5.6e-05      0.51      15      56 ..     163     204 ..     150     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.17
         LTD 35 avdLsgwkledasgeytfpngt......gtlaagey 64
                +v +  w+ ++++++y+ ++        + +++g++
  EHU01983.1 56 QVRIFAWQQTNNQEQYQTQQQIvaspplVRIEPGQK 91
                333335555555544555554455556666666666 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.6e-05
         LTD  15 edgagnnan..efvelyNtsskavdLsgwkledasge.....ytfpngt 56 
                 +       +   ++el+N+++    Ls+ ++  +  +     y++ n+t
  EHU01983.1 163 A-------GgkRYLELTNRGNGHARLSNVTIGGQRLGnglygYVLANST 204
                 2.......1239*******************998866677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1863.60
//
Query:       EHU01984.1  [L=324]
Description: sigma-fimbriae tip adhesin [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-40  136.7  21.6    5.1e-27   95.0   9.3    2.1  2  SCPU      Spore Coat Protein U domain


Domain annotation for each model (and alignments):
>> SCPU  Spore Coat Protein U domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   4.4   1.2e-16   2.1e-12      13     139 .]      19     161 ..      10     161 .. 0.78
   2 !   95.0   9.3   2.9e-31   5.1e-27       5     138 ..     188     320 ..     186     321 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.2e-16
        SCPU  13 asCtissggtldFGsvsapvvaasltss.gtisvtCt........ngtsytialdgGangsggta.RrlksttgaaylaYnLYqdaarttvwgdgtsvs 101
                 a+C++ ++ + +FGsv++ v++++++s+ ++  v+C         +++++t +l++ +n++g+    + +++tg+++++ +L++d+a+ + ++ g  + 
  EHU01984.1  19 AACALPAS-SASFGSVTTFVANTTVSSTsTNADVNCGsgsalsllSNNQITFQLTSASNANGTRGiLKRSGDTGSDNIPVRLCTDSACASELTIGGPAF 116
                 79******.*****888888777777773555****5455566676666666666666666665333334456777***************99998766 PP

        SCPU 102 laattv........tgtsqtlpvYgrilaaqqtvpaGtYtDtvtvt 139
                 +  + +        ++ +  +pvY r+l ++qtv+aGtYt t+++t
  EHU01984.1 117 VYNSATlinlagllGSLNFAIPVYLRTL-TGQTVAAGTYTVTLNMT 161
                 6555448999999999999********9.**************997 PP

  == domain 2  score: 95.0 bits;  conditional E-value: 2.9e-31
        SCPU   5 lavsatvaasCtissggtldFGsvsapvvaasltssgtisvtCtngtsytialdgGangsggtaRrlksttgaaylaYnLYqdaarttvwgdgtsvsla 103
                 ++v++++ ++Ct  ++ +++FG  sap+va+  ++s+ti+v C++g++yt++l++G+n+ +++ R+++s  g+++l+Y++Y+ ++ +  wg + +++++
  EHU01984.1 188 ITVTVVLSNDCTAITAPNISFG--SAPLVASFGSVSQTINVLCSKGSTYTVGLSNGNNAVSSV-RNMAS--GTNRLSYEIYKGTTSN-RWGPSGTERVS 280
                 68999******766666*****..**************************************9.*****..***********99877.5*********9 PP

        SCPU 104 attv.....tgtsqtlpvYgrilaaqqtvpaGtYtDtvtv 138
                 +t +     +g + ++++ +r+l++q+t+paG+YtD+v+v
  EHU01984.1 281 STAAdtvstDGLTRSYNYTARVLTTQNTPPAGNYTDSVVV 320
                 99888888888888************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2728.95
//
Query:       EHU01985.1  [L=440]
Description: putative sugar transporter transmembrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-33  115.8  30.3    7.3e-25   87.7   5.2    2.0  2  Sugar_tr  Sugar (and other) transporter
    4.5e-28   98.2  51.5    1.3e-19   70.4  25.5    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.12   12.6   0.1    2.7  3  DUF872    Eukaryotic protein of unknown function (DUF872)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   5.2   1.2e-28   7.3e-25       5     201 ..      21     222 ..      17     228 .. 0.92
   2 !   35.4  16.4   9.4e-13   5.6e-09     242     433 ..     227     420 ..     219     430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 1.2e-28
                 HHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.... CS
    Sugar_tr   5 aalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.... 99 
                 ++ g +l+ Yd+ v g+++t ++  ++f  +   ss      l+ +++++ ++ + +G++++g  +d  GR+k+ll +  l+  g++ +a+ +g+    
  EHU01985.1  21 VTSGNFLEMYDFMVFGYYATAIS-KTFFPGDDPFSSLM----LTLMTFGAGFLMRPLGAIILGAYIDHHGRRKGLLLTLGLMALGTLTIALVPGYatlg 114
                 44556******************.56666666666565....79*************************************************999999 PP

                 .SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGGGS- CS
    Sugar_tr 100 .nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilllflP 192
                   +  ++++gR+l G+++G++ + v++y++E+Apk   g++vs++  + ++  ++aa +glgln+  +     ++gwri++ + +++  +l++++ +l+
  EHU01985.1 115 aAAPILILLGRLLQGFSAGVELGGVSVYLAEVAPKGRKGFFVSWQSGSQQIAVIFAALLGLGLNHLLShdevtEWGWRIPFVVGCLIVPFLFYIRRMLE 213
                 999999*********************************************************9998889*************999999********** PP

                 --HHHHHHT CS
    Sugar_tr 193 ESPrylvek 201
                 E+  +   k
  EHU01985.1 214 ETEAFSQRK 222
                 **9997766 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 9.4e-13
                 HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 242 wkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgiv 337
                 +  +++s+   ++l+++ +l++++  +   +i+ + pt+ +++ +  +   ++vt+ vg+ n +   v   l+dr+GRR+lll+ ++ m++ ++ +   
  EHU01985.1 227 MTDIMRSVASNWALVLAGMLMVVTTTVMFYMITAFTPTFGKTVLMMSDkqaFMVTLFVGISNLFWLPVMGALSDRVGRRPLLLTFTVLMIATAWPV--- 322
                 5556666667899******************************999999*****************9999***************99999999999... PP

                 HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHH.HHHHHHHHHHHHHHHHHCHHH....T-HHHHHHHHHHHHHHH CS
    Sugar_tr 338 alllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiava.vnwlanflisllfpiiteaig....ggyvflvfaglavlfii 431
                  +++v +    s++ + +  l++ +  ++ ++ + v+++E+ p +vR+++ ++a+  +  l+  ++  +  ++  a+g     g    + a++ +++++
  EHU01985.1 323 LHWMVGAP---SFGHLLAAELWLSFLYASYNGAMVVYLAEIMPAEVRAAGFSLAYSlATALFGGFTPAVSSYLIHASGdkamPGAWLTFAAICGLIGTL 418
                 57777776...88888888888888888**************************972456788888888888887777666544444555666666665 PP

                 HH CS
    Sugar_tr 432 fv 433
                  +
  EHU01985.1 419 LI 420
                 55 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4  25.5   2.1e-23   1.3e-19       4     258 ..      24     292 ..      21     294 .. 0.81
   2 !   33.0  23.6   4.9e-12   2.9e-08      37     172 ..     279     420 ..     277     438 .. 0.80

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 2.1e-23
       MFS_1   4 aaflsalarsilgpalplalaedlg.ispseigllltlyalga.....avaslplGrlsdrfGrrrvlllglllfalg.lllll...fa...sslw.ll 88 
                 + fl +++++++g  ++ a+++++   +  + +l+ltl ++ga      +++++lG+ +d +Grr+ lll+l l+alg l+++l   +a   +  + l+
  EHU01985.1  24 GNFLEMYDFMVFGYYAT-AISKTFFpGDDPFSSLMLTLMTFGAgflmrPLGAIILGAYIDHHGRRKGLLLTLGLMALGtLTIALvpgYAtlgAAAPiLI 121
                 67888888888888888.7777766334444566666655555334457888999999********************66666633323677678889* PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepper 179
                 l++r+lqG+ ag+ + ++ +++a+++pk ++g+ +++ s++ ++++i+++llg  l ++l+        Wr +f++ +++  ++     +++++   e 
  EHU01985.1 122 LLGRLLQGFSAGVELGGVSVYLAEVAPKGRKGFFVSWQSGSQQIAVIFAALLGLGLNHLLShdevtewgWRIPFVVGCLIVPFL-----FYIRRMLEET 215
                 *********************************************************9999****7777777777776666666.....8889999999 PP

       MFS_1 180 krkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlgls..glllaglllallalvga 258
                 + +s+++      + +++++ +++ ++  l  + ++++++++++f+++++++p++ ++vl +s   +++++l+++++ l+++
  EHU01985.1 216 EAFSQRKH-----HPSMTDIMRSVASNWALVlAGMLMVVTTTVMFYMITAFTPTFGKTVLMMSdkQAFMVTLFVGISNLFWL 292
                 99988777.....6666666999999998845666666666779999****************9966999999999988876 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 4.9e-12
       MFS_1  37 lltl.yalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f.a.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa.g 129
                 ++tl +++  ++  +++G+lsdr+Grr++ll+  +l++++++  l + + ++++  ll++ +  ++ +++++ a+++++a++ p e r+ +++l+++ +
  EHU01985.1 279 MVTLfVGISNLFWLPVMGALSDRVGRRPLLLTFTVLMIATAWPVLhWmVgAPSFgHLLAAELWLSFLYASYNGAMVVYLAEIMPAEVRAAGFSLAYSlA 377
                 45553666778999999***********999999999999555557444766676**************************************998857 PP

       MFS_1 130 fslGailgpllggllasslg...Wravfyilaivsllafvlfllll 172
                 ++l   ++p+++++l+++ g    +++++ +a+++ l +    ll+
  EHU01985.1 378 TALFGGFTPAVSSYLIHASGdkaMPGAWLTFAAICGLIGT---LLI 420
                 77777***********88888**77777777777777655...232 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.61   3.6e+03      73      86 ..      85      98 ..      56     117 .. 0.58
   2 ?   -1.1   1.0      0.34     2e+03      91     107 ..     138     154 ..      84     157 .. 0.52
   3 ?   12.6   0.1   1.9e-05      0.12      19      67 ..     207     255 ..     185     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.61
      DUF872 73 GvssavflvlGlll 86
                G ++   l lGl++
  EHU01985.1 85 GRRKGLLLTLGLMA 98
                44444444444432 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.34
      DUF872  91 vYhvvyiylavrGakGy 107
                    v+++ +a +G+kG+
  EHU01985.1 138 GVSVYLAEVAPKGRKGF 154
                 24566777777777777 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.9e-05
      DUF872  19 ysfsslssvtqrsywlkhPkvkknrkvvlaallLlllGlvLlllgvvil 67 
                 y    l++++  s+  +hP + + +++v+   +L+l G++++++++v++
  EHU01985.1 207 YIRRMLEETEAFSQRKHHPSMTDIMRSVASNWALVLAGMLMVVTTTVMF 255
                 55667889999999*************************9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3128.26
//
Query:       EHU01986.1  [L=140]
Description: membrane spanning protein in TonB-ExbB-ExbD complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-29  102.7   1.0    1.9e-29  102.5   1.0    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   1.0   1.1e-33   1.9e-29       4     126 ..      14     133 ..      11     136 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.1e-33
        ExbD   4 esaeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikadkd 102
                 e+ ein+tp+iDv+++LLi+F+v+a+l++ + ++v+lP s+s   +  +++++++si+ad+++y++ ++v+ ++l + l ++ + ++d  t+ ++adk+
  EHU01986.1  14 EMHEINVTPFIDVMLVLLIIFMVAAPLATVD-VRVNLPASTSAP-QPRPEKPVYLSIKADKQLYVGNDQVNKDALINVLMQQTQGNKDT-TIFFQADKS 109
                 789****************************.************.5*******************************************.********* PP

        ExbD 103 vsygklvevldtlkkagiekvslv 126
                 v y++l+ v+d+l+ ag+ k++l+
  EHU01986.1 110 VDYETLMSVMDELRTAGYLKIGLM 133
                 ********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1086.11
//
Query:       EHU01987.1  [L=247]
Description: membrane spanning protein in TonB-ExbB-ExbD complex [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-33  113.7   1.5    8.6e-33  112.8   1.5    1.5  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.52   10.1   1.4        1.7    8.5   0.1    2.1  2  Vpu        Vpu protein
        6.3    6.7   7.8       0.37   10.6   1.3    2.1  2  LapA_dom   Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   1.5   1.4e-36   8.6e-33      12     121 ..     100     206 ..      80     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 1.4e-36
                 HHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  12 aglqeklvdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalGlvvAipavla 110
                 ag++   ++g  +e++   le+ +++  ++  +g  +latigs+aP++GL+GTV+G++++f  +a++++++la+vapgiaeAL+aTa+Glv+Aipav++
  EHU01987.1 100 AGVE---ETGGIKERTAFRLERRVAAFCRHAGRGNGFLATIGSVAPFVGLFGTVWGIMNSFIGIAKTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVI 195
                 3444...4678899999999************************************************99***************************** PP

                 HHHHHHHHHHH CS
   MotA_ExbB 111 ynklkrkverl 121
                 yn++ r + + 
  EHU01987.1 196 YNVFARVIANY 206
                 *****988765 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00028       1.7       2      36 ..      17      52 ..      16      67 .. 0.71
   2 ?    0.1   0.2      0.12     7e+02       6      25 ..     183     198 ..     177     217 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00028
         Vpu  2 lsleliglialivalii.aivvWtivyreykkikkq 36
                ++   i + ++++ l++  +v W+i + +y +    
  EHU01987.1 17 YQHADIVVKVVMIGLLLaSVVTWAIFFGKYAELSAA 52
                5555566666666666659999*****999987665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.12
         Vpu   6 liglialivaliiaivvWti 25 
                 +igl+a+i     a+v+  +
  EHU01987.1 183 AIGLVAAIP----AVVIYNV 198
                 345555544....4555444 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   6.2e-05      0.37      26      60 ..      26      60 ..      22      63 .. 0.89
   2 ?   -1.4   0.7      0.34   2.1e+03      24      35 ..     179     190 ..     167     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.2e-05
    LapA_dom 26 afgiGallgwllslwsylrlrrelrrlkkkikkle 60
                ++ iG+ll+ ++++   + +  el+++++++k+ +
  EHU01987.1 26 VVMIGLLLASVVTWAIFFGKYAELSAARRRLKREQ 60
                6789**********9999*************9965 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
    LapA_dom  24 lvafgiGallgw 35 
                 l+a +iG+++++
  EHU01987.1 179 LLATAIGLVAAI 190
                 566666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2168.79
//
Query:       EHU01988.1  [L=171]
Description: hypothetical protein CKS_0468 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1380.13
//
Query:       EHU01989.1  [L=458]
Description: 4-hydroxybenzoate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-53  179.8  64.5    4.9e-50  170.4  43.8    2.0  2  MFS_1            Major Facilitator Superfamily
    5.6e-27   94.7  32.5    3.3e-24   85.6   7.9    2.1  2  Sugar_tr         Sugar (and other) transporter
    3.3e-09   36.5   9.8    3.3e-09   36.5   9.8    2.2  2  MFS_4            Uncharacterised MFS-type transporter YbfB
     0.0039   16.1  15.0      0.095   11.5   8.2    2.5  2  MFS_1_like       MFS_1 like family
  ------ inclusion threshold ------
       0.15   12.0   0.8        2.7    7.9   0.1    2.2  2  UPF0227          Uncharacterised protein family (UPF0227)
       0.22   11.7   7.1        1.1    9.4   1.5    2.4  2  DUF4381          Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4  43.8   1.6e-53   4.9e-50       2     352 ..      30     398 ..      29     399 .. 0.88
   2 !   23.3  12.7   8.6e-09   2.6e-05      73     167 ..     336     429 ..     334     450 .. 0.79

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 1.6e-53
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++++l +++++i g+++p  l+ d  i+  e+gl++++  +g a+++++ G+lsd++Gr+ v++ ++++f++++l+ +f++++  ++++r+l+Glg g
  EHU01989.1  30 FCIIALDGFDIAIMGFIAP-ELKADWAIANRELGLIISAALVGLALGAMLSGPLSDKLGRKVVIINSVFFFGAWTLITAFSQNMEQMVLFRFLTGLGLG 127
                 78999**************.9*****************************************************77777966666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll........peepperkrkspkeee... 188
                 a++p++++l+a+ +p ++r++ i ++  gf +Ga+lg  ++++l+ ++gW+av ++ +i+ +l++ l l+ l        +         + + ++   
  EHU01989.1 128 AAMPNVGTLVAEFAPARRRAFLITVVFCGFTFGAALGGFAASWLMPHFGWHAVLLLGGILPILFVPLLLWALpesvcflvV--------RRAASQKihr 218
                 *****************************************************9999999999866766777555555431........3333333333 PP

       MFS_1 189 ..................kgtgpaplvpawkallkdpvlw...illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagr 266
                                     + +a++  + k +l+d + +   +l+ a +++ f f++l ++lp+ l ++ g+s +++a+++ al++++g +++l++g+
  EHU01989.1 219 ilaklapdldlqqctvalPPVSRAHAQ-PVKVVLNDTYRFgslMLWGAYFTALFLFYTLGSWLPM-LIKDNGFS-VVQAAVITALFQAGGTCGSLFSGW 314
                 444567888888666555444444444.5999999998867789*********************.5*******.************************ PP

       MFS_1 267 lsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 l+dr+ ++r+l l+++++ l+++++ l  +   +vll    ++iGf+ g +++ ++al ++++p+e+++t s+++  +g +g++l+
  EHU01989.1 315 LMDRIESHRALSLIYGAGGLFTVCMGLSMTH--PVLLGGCALMIGFCIGGANTGMNALSASFYPTEARATGSSWMHGVGRVGAILS 398
                 ***********99999999999988887766..6666667777****************************************997 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 8.6e-09
       MFS_1  73 alglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvl 167
                  ++ + l+   +++ ll  + ++ G++ g+++++++al a  +p e r+ + +++ +   +Gail +l+g+ ++   +g + +f +lai +ll + +
  EHU01989.1 336 TVC-MGLS--MTHPvLLGGCALMIGFCIGGANTGMNALSASFYPTEARATGSSWMHGVGRVGAILSALAGAEMLaLGWGVTTIFAVLAIPALLTVAM 429
                 333.3333..446667999999********************************************9999966636666777799999999998553 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   7.9   1.1e-27   3.3e-24      11     220 ..      35     229 ..      25     236 .. 0.87
   2 !   14.9  16.6     3e-06    0.0091      44     188 ..     290     429 ..     237     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.1e-27
                 HHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGH CS
    Sugar_tr  11 lfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgR 109
                 l g+d++++g+++  lk      +  ++   e     +gli s++lvG ++G++++g+l+d++GRk +++ ++++f + ++++a+++   ++e++++ R
  EHU01989.1  35 LDGFDIAIMGFIAPELK----ADWAIANR--E-----LGLIISAALVGLALGAMLSGPLSDKLGRKVVIINSVFFFGAWTLITAFSQ---NMEQMVLFR 119
                 56788888888877777....44444443..3.....59************************************************...9******** PP

                 HHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS---HHHHHHTT-HH.H CS
    Sugar_tr 110 vlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallll.illlflPESPrylvekgkee.e 206
                 +l+G+g+G+a   v ++++E+Ap++ R +l+++   + tfG  ++ +    l    +   w+  l l  ++++l++ +ll+ lPES  +lv ++  + +
  EHU01989.1 120 FLTGLGLGAAMPNVGTLVAEFAPARRRAFLITVVFCGFTFGAALGGFAASWLMPHFG---WHAVLLLGGILPILFVpLLLWALPESVCFLVVRRAASqK 215
                 *****************************************9999888888777777...*******999999887366699********999988878 PP

                 HHHHHHHHHHCHHH CS
    Sugar_tr 207 akevlaklrgeeda 220
                   ++lakl  + d 
  EHU01989.1 216 IHRILAKLAPDLDL 229
                 89999997766555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3e-06
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG.HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg.RvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 s v+  +i+++f++G+++Gslf+g+l+dr+    +l  +       +v+++++    ++ vl+ g  + +G+++G+a++ +  + + + p++ R +  s
  EHU01989.1 290 SVVQAAVITALFQAGGTCGSLFSGWLMDRIESHRALSLIYGAGGLFTVCMGLSM---THPVLLGGcALMIGFCIGGANTGMNALSASFYPTEARATGSS 385
                 789999*********************998877777655555555566666666...6777777647889*************************9999 PP

                 HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 142 lyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 +      +G +++a  g+ +   +   g    +++ ++pall + ++
  EHU01989.1 386 WMHGVGRVGAILSALAGAEMLALGW--GVTTIFAVLAIPALLTV-AM 429
                 9998888888888888888754443..67778888888985544.33 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   9.8   1.1e-12   3.3e-09      15     170 ..      46     200 ..      42     235 .. 0.83
   2 ?    3.5  13.5     0.012        36      14     171 ..     278     433 ..     271     450 .. 0.62

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.1e-12
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                 i P+l a+  +   ++gl+ +a ++G  +Ga+l      +   ++++  +++   + +l  a+ +++  ++l Rfl+G++ ++++  +++lv + a a 
  EHU01989.1  46 IAPELKADWAIANRELGLIISAALVGLALGAMLSGPLSDKLGRKVVIINSVFFFGAWTLITAFSQNMEQMVLFRFLTGLGLGAAMPNVGTLVAEFAPAR 144
                 5699999999999*******************9855555555556699999999********************************************* PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvlll.lqlglsasslWlalavlsavllllvalllp 170
                 rr++++ ++f+G  +G a++g +++ l  ++g++a    l+ ++l ++ + l+++ lp
  EHU01989.1 145 RRAFLITVVFCGFTFGAALGGFAASWLmPHFGWHAV--LLLGGILPILFVPLLLWALP 200
                 *********************998655055555555..56677776666656666666 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.012
       MFS_4  14 piLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaa.....flliRflaGvasAvvlvfgsslvl 107
                   LP+l+++ ++s+ qa+ + a   +G   G+l+    + + ++   l     a  l ++ m+l     +      l+i f  G a   +  + +s   
  EHU01989.1 278 SWLPMLIKDNGFSVVQAAVITALFQAGGTCGSLFSGWLMDRIESHRALSLIYGAGGLFTVCMGLSMTHPVllggcALMIGFCIGGANTGMNALSASFYP 376
                 47*******************************774444333333333333333334444443332222200111356778777776666666555554 PP

       MFS_4 108 ahaaaarrervgallfaGvG.lGiavsgllvllllqlglsasslWlalavlsavllllvalllpr 171
                  +     + + g+    GvG +G ++s+l+ + +l+lg++  ++    avl++ +ll va+++ +
  EHU01989.1 377 TE-----ARATGSSWMHGVGrVGAILSALAGAEMLALGWGVTTIF---AVLAIPALLTVAMIAAK 433
                 44.....455567777799978*******************9655...55555555555444442 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   8.2   3.2e-05     0.095     278     372 ..      77     170 ..      21     181 .. 0.82
   2 !    8.4   0.5   0.00029      0.88       8      67 ..     270     325 ..     254     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
  MFS_1_like 278 ffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGl 372
                 +++  l +klG  +++i +++++ +  l+ a+ +n+  ++++ +L g+ +g+    + + v+++ap + +a+++ ++    f +G alG +++  
  EHU01989.1  77 MLSGPLSDKLGRKVVIINSVFFFGAWTLITAFSQNMEQMVLFRFLTGLGLGAAMPNVGTLVAEFAPARRRAFLITVVF-CGFTFGAALGGFAASW 170
                 66777899***9999999999999877777777*****************************************9864.5688899999988754 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00029
  MFS_1_like   8 yFfffaalgsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkv 67 
                 +F+f  +lgs lP   + +k+ g+++ + ++it++  +    ++++ g+l Dr++ + ++
  EHU01989.1 270 LFLF-YTLGSWLP---MLIKDNGFSVVQAAVITALFQAGGTCGSLFSGWLMDRIESHRAL 325
                 4444.47888888...5689*********************************9998884 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.046   1.4e+02      61      93 ..      67      99 ..      55     115 .. 0.88
   2 ?    7.9   0.1   0.00092       2.7      65      87 ..     160     182 ..     129     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.046
     UPF0227 61 illvGssLGGyyatrlgerfglrqvllnPalkp 93
                 +lvG +LG  ++  l+ + g + v++n  +++
  EHU01989.1 67 AALVGLALGAMLSGPLSDKLGRKVVIINSVFFF 99
                589************************976665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00092
     UPF0227  65 GssLGGyyatrlgerfglrqvll 87 
                 G +LGG+ a +l   fg ++vll
  EHU01989.1 160 GAALGGFAASWLMPHFGWHAVLL 182
                 899*****************997 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.5   0.00038       1.1      12      77 ..     168     237 ..     166     249 .. 0.70
   2 ?    4.9   0.4    0.0096        29      17      51 ..     406     442 ..     397     447 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00038
     DUF4381  12 vswwPpapGwwlllaalllllllvlalwllr..rrkrn...rreAlreLaalradeadakellaalselLk 77 
                  sw  p  Gw ++l++  +l +l++ l+l+      +    rr+A + ++++  ++  ++  l+++ + L 
  EHU01989.1 168 ASWLMPHFGWHAVLLLGGILPILFVPLLLWAlpESVCFlvvRRAASQKIHRIL-AKLAPDLDLQQCTVALP 237
                 69********9999555555555555555542144444999*****9999999.77777777887777665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0096
     DUF4381  17 papGwwlllaalll...llllvlalwllrrrkrnrreA 51 
                 +a Gw +  ++++l   +ll v+++ +  r+++ r+ A
  EHU01989.1 406 LALGWGVTTIFAVLaipALLTVAMIAAKGRYQQ-RQRA 442
                 567776666555555665555555555558877.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.35
# Mc/sec: 3907.51
//
Query:       EHU01990.1  [L=246]
Description: protocatechuate 3,4-dioxygenase beta chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-54  184.4   0.0    1.7e-54  184.0   0.0    1.1  1  Dioxygenase_C    Dioxygenase
    1.6e-13   50.0   3.1    3.3e-13   49.0   3.1    1.6  1  PCDO_beta_N      Protocatechuate 3,4-dioxygenase beta subunit
    1.8e-06   28.2   0.0      7e-06   26.2   0.0    1.9  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.093   13.1   0.0       0.15   12.4   0.0    1.2  1  DUF4198          Domain of unknown function (DUF4198)


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.0   3.7e-58   1.7e-54       1     182 []      48     231 ..      48     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 3.7e-58
                    ---S--EET..--EEESEEE---S-.-TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SS.TTTTE..EEEE--TTSEEEEEE CS
  Dioxygenase_C   1 iegPlyvee..apededlarledkg.eeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheap.elnlr..griltdeeGryrirt 90 
                    i++P+++ +  +p d+dl+ +  k+  ++ger++++G v+d+ G+p+++alve+W+ana GrY+hkk+++ ap ++n+   gr+ltd++G+y +rt
     EHU01990.1  48 ITAPVFTRQelGPRDSDLILNYAKDgLPIGERIIVHGYVRDAFGQPVRNALVEVWQANAGGRYRHKKDQYLAPiDPNFGgcGRMLTDDNGYYCFRT 143
                    789***99889********9999888****************************************************9999************** PP

                    E----EE--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB.--EEEEEEETT-TTTT.S-TT--.....--TTTEE--EEE-SHS-.EEEEE--EE CS
  Dioxygenase_C  91 ikPapYpipndGptgklldalgrhawRPaHiHfsvsapgh.rklvTqlyfegdkyla.ddivsa.....akeeLiaeleesedeeekalelefdlv 179
                    ikP+pYp++n           ++ +wRPaHiHfs+s++++ ++l+Tq+yfegd+++  ++i+++     a   Liael+++++ + ++l+++fdlv
     EHU01990.1 144 IKPGPYPWRN-----------QVSDWRPAHIHFSLSGEAFaQRLITQMYFEGDPLVGrCPILQSvgseeAVRPLIAELDTHSAIPLDCLAYRFDLV 228
                    **********...........899********************************99******999998999*********************** PP

                    --B CS
  Dioxygenase_C 180 Ldg 182
                    L+g
     EHU01990.1 229 LRG 231
                    *85 PP

>> PCDO_beta_N  Protocatechuate 3,4-dioxygenase beta subunit N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   3.1   7.3e-17   3.3e-13       2      33 ..      12      43 ..      11      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 7.3e-17
  PCDO_beta_N  2 prdrasHPpalyPpYkSSvLRaPkqpLislpq 33
                 +rd+++HPpal+P Yk+S+LR+P+++Lisl++
   EHU01990.1 12 HRDYRHHPPALAPLYKTSILRSPRNALISLQN 43
                 69****************************98 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.6e-09     7e-06       2      53 ..      82     152 ..      81     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.6e-09
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtg...................tvastttdadGafrlrglppgtysvt 53 
                      ++G+V+da g+p+ +a V+v +a+ g                      ++ td++G++ +r ++pg+y  +
       EHU01990.1  82 VHGYVRDAFGQPVRNALVEVWQANAGgryrhkkdqylapidpnfgGCGRMLTDDNGYYCFRTIKPGPYPWR 152
                      79******************876665689999999999998887667*********************765 PP

>> DUF4198  Domain of unknown function (DUF4198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.4e-05      0.15     161     205 ..      91     149 ..      86     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
     DUF4198 161 GkPlagaeveveyggt..ryrdapdeikv............ktdadGvvtftlpkaGlw 205
                 G+P+ +a vev+ +++  ryr+++d++ +             td++G+  f+  k+G +
  EHU01990.1  91 GQPVRNALVEVWQANAggRYRHKKDQYLApidpnfggcgrmLTDDNGYYCFRTIKPGPY 149
                 9**************9999****999777889999999999***********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1880.07
//
Query:       EHU01991.1  [L=206]
Description: protocatechuate 3,4-dioxygenase alpha chain [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-20   73.0   0.0    1.6e-19   70.1   0.0    1.9  1  Dioxygenase_C  Dioxygenase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   8.7e-24   1.6e-19      21     182 .]      40     197 ..      29     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 8.7e-24
                    -S--TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TT.S-SS.TTTTE..EEEE--.TTSEEEEEEE----EE--TTSHHHHHHHHT CS
  Dioxygenase_C  21 dkgeeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkee.heap.elnlr..griltd.eeGryrirtikPapYpipndGptgklldal 111
                    +++e  ger++++G v d  G p+++ l+e+W+ana+GrY+h +++ +++p ++++r  gr+ +d + G +r++tikP++   ++           
     EHU01991.1  40 TQPETRGERITVEGCVYDGSGTPVRDVLIEVWQANAAGRYQHPADQqQDKPlDPAFRgwGRTCSDfDSGIWRFETIKPGSVTGRD----------- 124
                    456899************************************876515778******99999999567***********987776........... PP

                    T---EE-SEEEEEEE-TTB.--EEEEEEETT-TTTT..S-TT--.....--TTTEE--EEE-SHS-.EEEEE--EE--B CS
  Dioxygenase_C 112 grhawRPaHiHfsvsapgh.rklvTqlyfegdkyla..ddivsa.....akeeLiaeleesedeeekalelefdlvLdg 182
                       ++ P H+ + + a g+   l T+lyf+ ++  +  d++++       ++ L+a+ e++ +e    + ++fd+vL+g
     EHU01991.1 125 -GRPMAP-HLNLWIVARGInIGLNTRLYFADEQAANarDPVLNLiewekRRNTLLAHREQRGSE----TVYRFDIVLQG 197
                    .344555.999********889********9998877688877777765566666655555444....6899****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1501.19
//
Query:       EHU01992.1  [L=310]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-31  108.9   6.4    3.3e-31  108.3   6.4    1.2  1  LysR_substrate  LysR substrate binding domain
    3.8e-17   62.0   4.0      9e-17   60.8   4.0    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.076   13.1   0.4       0.37   10.9   0.2    2.3  2  HTH_20          Helix-turn-helix domain
       0.42   10.5   0.1       0.42   10.5   0.1    2.6  4  HTH_8           Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   6.4   7.4e-35   3.3e-31       8     207 ..     103     304 ..      97     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 7.4e-35
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGG CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsled 100
                     L+iga pt+  ++++p+la+++++yP+ ++++++ ++++ll ++++g++ l+i +  +    +gl ++ L+ e l lv++p+hpL +   v+l++
      EHU01992.1 103 LHIGALPTAIGSVVAPVLASLQQHYPGWRIQVTTLSNDALLMAIKSGKMTLGIGRMAEpvLMDGLNFELLYLETLRLVVAPHHPLLHA-GVTLAE 196
                     99*****************************************************99999**************************96.6899** PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCH CS
  LysR_substrate 101 Ladeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrels 194
                        +plil ++g+  r+ +e ++ ++gl++ ++a+e+ s+  +++l ++   + l+p  avrd+l +++l++lplp+  +  ++++++r+++ ++
      EHU01992.1 197 ALSWPLILSPRGTVPRQNAESLMTSHGLTLpEGAVETLSTTLARRLTQNHGYVWLVPYGAVRDDLTSNQLRVLPLPNQGMAEAVGILTRQQHTPP 291
                     *****************************99**********************************************9999************** PP

                     HHHHHHHHHHHHH CS
  LysR_substrate 195 pavrafidflrea 207
                     p  ++++++lr++
      EHU01992.1 292 PEQQHLVAALRQR 304
                     **********997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   4.0     2e-20     9e-17       1      59 [.      13      71 ..      13      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 2e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                lr+l++fva a++g++ rAA++Lg++qpa+s+ +++LE + g++L++R+ +g+ LT+ G
  EHU01992.1 13 LRHLHAFVATAQQGTLGRAARQLGITQPALSKTLSELEYLTGEQLLVRSRQGTALTASG 71
                79**********************************************999******98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   8.2e-05      0.37      16      49 ..      13      50 ..       7      53 .. 0.86
   2 ?   -2.3   0.0       1.1   4.8e+03      28      50 ..     236     244 ..     228     269 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.2e-05
                HHHH....STCTTB-HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_20 16 lraL....araegltaselaerldlskntlsyHLrvLe 49
                lr+L    a+a+  t++  a++l++++  ls+ L +Le
  EHU01992.1 13 LRHLhafvATAQQGTLGRAARQLGITQPALSKTLSELE 50
                45555559999************************997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
                 HHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20  28 selaerldlskntlsyHLrvLee 50 
                 + la+rl               +
  EHU01992.1 236 TTLARRL--------------TQ 244
                 4444444..............22 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   9.3e-05      0.42      16      37 ..      23      44 ..      20      49 .. 0.83
   2 ?   -3.6   0.1       2.3     1e+04      28      32 ..     153     157 ..     152     158 .. 0.84
   3 ?   -2.0   0.1      0.73   3.3e+03      33      40 ..     236     243 ..     235     244 .. 0.84
   4 ?   -1.9   0.1      0.69   3.1e+03       6      15 ..     293     302 ..     293     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.3e-05
                HTTT-HHHHHHHHTS-HHHHHH CS
       HTH_8 16 rtgGnkskAArlLGisRrtLyr 37
                +++G + +AAr LGi+   L +
  EHU01992.1 23 AQQGTLGRAARQLGITQPALSK 44
                578999**********888876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.3
                 HTS-H CS
       HTH_8  28 LGisR 32 
                 LGi+R
  EHU01992.1 153 LGIGR 157
                 9**99 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.73
                 HHHHHHHH CS
       HTH_8  33 rtLyrKLk 40 
                 +tL r+L 
  EHU01992.1 236 TTLARRLT 243
                 79****96 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.69
                 HHHHHHHHHH CS
       HTH_8   6 EkelIeaALe 15 
                 E+++++aAL+
  EHU01992.1 293 EQQHLVAALR 302
                 8999*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2335.20
//
Query:       EHU01993.1  [L=327]
Description: 4-carboxymuconolactone decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-25   88.1   1.6    6.2e-25   87.1   0.1    2.4  2  CMD            Carboxymuconolactone decarboxylase family
    1.2e-06   28.1   0.0    2.9e-06   26.8   0.0    1.7  1  Thiolase_N     Thiolase, N-terminal domain
     0.0043   17.2   0.1     0.0074   16.4   0.1    1.4  1  Abhydrolase_4  TAP-like protein
     0.0079   15.5   0.1      0.011   15.0   0.1    1.3  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3     6e+03      53      75 ..      22      43 ..      21      49 .. 0.61
   2 !   87.1   0.1   1.4e-28   6.2e-25       2      84 ..     235     317 ..     234     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                TT--HHHHHHHHHHHHHHHSHHH CS
         CMD 53 aGvteeeiaevlaqaaayagwpa 75
                aG +++++a++   a  + + pa
  EHU01993.1 22 AGIRADDLAALPLAALLARQ-PA 43
                67888888866655544443.54 PP

  == domain 2  score: 87.1 bits;  conditional E-value: 1.4e-28
                 HHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   2 ellraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                 e+++++ ++++++++ r+g L++ +r+Li++++++a+++e ++++H+raA ++Gv+++ei+evl++aa y+g paa+aA+++a+
  EHU01993.1 235 EFQHFISRYAWGEIWtRPG-LSRHTRSLITIGMLIALNREAELKMHLRAAFNNGVSRDEIKEVLMHAALYCGLPAANAAFHLAQ 317
                 799************9998.*********************99*************************************9996 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   6.5e-10   2.9e-06       2      61 ..       5      66 ..       4      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 6.5e-10
                EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-.GGGCCEEEEEHSSCT.TSTSC CS
  Thiolase_N  2 vivsaartpigkfggslkdlsaeeLlaealkallekagvd.peevdevivGnvlqa.gegqn 61
                +i +a rtp+g++gg+l+ ++a++L+a  l all++ + + ++++d+vi G+  +a   g+ 
  EHU01993.1  5 FICDALRTPFGRYGGALAGIRADDLAALPLAALLARQPASvAQAIDDVIYGCANSAaKIGES 66
                6999**********************************552679*******99888432332 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.6e-06    0.0074      32      68 ..     138     174 ..     108     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.6e-06
  Abhydrolase_4  32 kgaapvLllqnerDpaTPyegakklakalggavlvtv 68 
                    + + pvL+++++ D++T  + a+++   + ga+lv+ 
     EHU01993.1 138 AIHLPVLVIAGRDDAVTTVADAEAMVAHIHGAQLVVL 174
                    3358****************************99985 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.4e-06     0.011     168     219 ..     115     168 ..      41     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-06
  Hydrolase_4 168 itvrlllellda..mkrleeraakitlPllllhGeaDkvvdpeasrelyerlgs 219
                  + ++ +++++da   ++l+++ a+i+lP+l++ G +D v+  +++++++++++ 
   EHU01993.1 115 CDAESYADCCDAlaSADLRHELAAIHLPVLVIAGRDDAVTTVADAEAMVAHIHG 168
                  55555555555511567788899999***********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2760.30
//
Query:       EHU01994.1  [L=218]
Description: 3-oxoadipate CoA-transferase subunit B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-33  114.7   0.0    4.6e-33  114.5   0.0    1.0  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   2.5e-37   4.6e-33       2     214 ..       7     201 ..       6     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 2.5e-37
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtl 100
                 +++a++va++i++G++v++G    ig+P + ia++++    ++++++se+g+lg+gp ++++  + +++++g+e v+   g +f+++  +f+ +++g++
  EHU01994.1   7 DQLAQRVARDIPEGAYVNLG----IGLP-TRIANYLPA--DKEIFLHSENGLLGMGPAPAPEDADPELINAGKELVTLLPGGCFFHHGDSFA-MMRGGH 97 
                 57899***************....****.********9..****************************************************.****** PP

                 HHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 101 aerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 +++++ G+ +++  g+l+n+ +g   a+  + +p +gGa++ +++a  ++++++   ++++e +lv ++s++ ++ ++++  +++t+++v++i    + 
  EHU01994.1  98 LDICVMGAYQVSVSGDLANWSTG---AQ--DAIPAVGGAMDFAIGAR-KVYVMMDYLTKKGECKLVKQCSYPLTGLGCVS--RIYTDMAVIDI--TPDG 186
                 ***********************...44..59***************.6**************************99999..***********..8888 PP

                 ECCCESBTGGGHSEE CS
   CoA_trans 200 dpekvliPgvlvdav 214
                 + + +  Pg++++a+
  EHU01994.1 187 PLVVECCPGLSFEAL 201
                 999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1618.86
//
Query:       EHU01995.1  [L=229]
Description: 3-oxoadipate CoA-transferase subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-67  227.3   0.1    1.5e-67  227.1   0.1    1.0  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.1   0.1   8.6e-72   1.5e-67       2     215 ..       7     217 ..       6     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 227.1 bits;  conditional E-value: 8.6e-72
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqg 98 
                  t+aeava  i+dG+ +++GGFg +  P +li+al++sg ++ltvi+++ag   +gl +ll++g+v+k+i+s+  +  + +f++++  ge+e+el+pqg
  EHU01995.1   7 ATLAEAVA-VIPDGASIMIGGFGPADQPLELIDALIESGARGLTVISNNAGNgdSGLAALLKAGRVDKMICSFPRQVDSWVFDERYRRGEIELELVPQG 104
                 689*****.*****************************************9999**********************99********************* PP

                 HHHHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTT CS
   CoA_trans  99 tlaerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekg 197
                 +la r++a+g+gl+  g++t+t  gt +a++ k++++++G++y+ e++lkad+alika+++d++gnlv++k+a+nf+ p++a+aa +ti++v e+v+ g
  EHU01995.1 105 NLAARMQAAGSGLG--GIFTPTAFGTPLAEG-KETREIDGRHYVFEKPLKADFALIKAHQGDRWGNLVYRKAARNFG-PVMAMAATTTIAQVAELVPLG 199
                 **************..*********999999.8********************************************.********************* PP

                 SSECCCESBTGGGHSEEE CS
   CoA_trans 198 kldpekvliPgvlvdavv 215
                 +ldpe+v++Pg++v+++v
  EHU01995.1 200 QLDPENVVTPGIFVQRLV 217
                 ***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1828.62
//
Query:       EHU01996.1  [L=268]
Description: Pca regulon regulatory protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-32  111.8   0.1      3e-32  111.2   0.1    1.3  1  IclR      Bacterial transcriptional regulator
    7.9e-16   57.6   0.4    3.5e-15   55.5   0.1    2.4  2  HTH_IclR  IclR helix-turn-helix domain
    4.9e-06   26.8   0.0    2.2e-05   24.7   0.0    2.1  2  Rrf2      Transcriptional regulator
    9.1e-05   22.3   0.0    0.00017   21.4   0.0    1.4  1  TrmB      Sugar-specific transcriptional regulator TrmB
    0.00016   21.5   0.2    0.00054   19.8   0.1    2.0  2  MarR_2    MarR family
    0.00042   20.1   0.0     0.0061   16.4   0.0    2.6  2  HTH_5     Bacterial regulatory protein, arsR family
     0.0034   17.1   0.0      0.071   12.8   0.0    2.4  2  DUF4423   Domain of unknown function (DUF4423)
     0.0053   16.8   0.0      0.012   15.7   0.0    1.6  1  HTH_9     RNA polymerase III subunit RPC82 helix-turn-helix d
      0.007   16.3   0.0        0.1   12.6   0.0    2.4  2  HTH_11    HTH domain
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.041   13.4   0.0    2.0  2  HTH_24    Winged helix-turn-helix DNA-binding
      0.024   14.3   0.0      0.051   13.2   0.0    1.5  1  RP-C      Replication protein C N-terminal domain
      0.032   14.3   0.0       0.22   11.6   0.0    2.3  2  HTH_20    Helix-turn-helix domain
      0.077   13.7   0.0       0.18   12.5   0.0    1.5  1  RPA_C     Replication protein A C terminal
       0.26    9.9   0.0       0.41    9.2   0.0    1.2  1  Cullin    Cullin family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.1   2.4e-35     3e-32       2     127 ..     138     263 ..     137     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 2.4e-35
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                  +++ ++iG+rlp+ +t++G++lL+   +e l+ +l rl+  r+t++T+++  +L+eeLa+vR+qGya++++E e g+r++A+p+ +a g+ vaA++v 
  EHU01996.1 138 IMTIDLHIGSRLPASTTSMGRVLLSGFAAEPLNDYLARLTQLRYTSHTLVSSSALREELARVRQQGYAINDQELEIGLRSLAVPLCGADGRIVAALNVG 236
                 58999********************************************************************************************** PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkis 127
                 +++ +++ ++l+++ l+l++eaAr+is
  EHU01996.1 237 VHAGQVSADTLRQHHLPLLQEAAREIS 263
                 **************************9 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   2.8e-18   3.5e-15       1      49 [.      24      72 ..      24      75 .. 0.97
   2 ?   -3.7   0.0       8.3   1.1e+04      31      39 ..     131     139 ..     130     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2.8e-18
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                sl+R+l++L+a++ +++ +++s++++rtg+p+++v+R+L tL +lG+v 
  EHU01996.1 24 SLARGLEVLQAFTPQRRVMSVSQISQRTGIPRAAVRRCLYTLSKLGFVY 72
                79*********************************************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.3
                 -HHHHHHHH CS
    HTH_IclR  31 pkStvhRlL 39 
                 ++++++R++
  EHU01996.1 131 ARASASRIM 139
                 689999975 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.7e-08   2.2e-05      20      62 ..      36      78 ..      25      82 .. 0.90
   2 ?   -3.3   0.0       9.5   1.2e+04      38      51 ..     102     115 ..      99     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.7e-08
                SSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 20 eeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                 ++++ +s+++i++r++i++  +++ l +L+k g+v ++ Gk+
  EHU01996.1 36 TPQRRVMSVSQISQRTGIPRAAVRRCLYTLSKLGFVYAEDGKN 78
                567778***********************************96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.5
                 -HHHHHHHHHHHHH CS
        Rrf2  38 spsylekilakLrk 51 
                 s+++l+++ ++L++
  EHU01996.1 102 SQPVLRQLSQTLNE 115
                 78899999988875 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.3e-07   0.00017      21      59 ..      40      78 ..      30      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTT CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVerekgrp 59
                  +++++i++++g+pr+ v + L  L++ G+V+ e+g+ 
  EHU01996.1 40 RVMSVSQISQRTGIPRAAVRRCLYTLSKLGFVYAEDGKN 78
                67899******************************9983 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.2e-07   0.00054      21      56 ..      40      76 ..      24      82 .. 0.84
   2 ?   -2.8   0.0       4.7     6e+03      31      41 ..     128     138 ..     126     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.2e-07
                EE.EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 21 dl.tvgelarrlglsksavsrilkrLvaaGLverrpg 56
                ++ +v+++ +r+g++++av r l  L++ G+v  ++g
  EHU01996.1 40 RVmSVSQISQRTGIPRAAVRRCLYTLSKLGFVYAEDG 76
                334*****************************88866 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.7
                 HTSSHHHHHHH CS
      MarR_2  31 lglsksavsri 41 
                 l + ++++sri
  EHU01996.1 128 LYIARASASRI 138
                 77899999998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.8e-06    0.0061      14      46 ..      40      72 ..      29      73 .. 0.90
   2 ?    0.4   0.0      0.46   5.9e+02      24      44 ..     184     204 ..     182     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.8e-06
                SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 14 gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                + ++v++++  +g+++++v++ L  L ++G+V+
  EHU01996.1 40 RVMSVSQISQRTGIPRAAVRRCLYTLSKLGFVY 72
                679****************************96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.46
                 HHTS-HHHHHHHHHHHHHTTS CS
       HTH_5  24 elglsqstvShHLkkLreaGL 44 
                 ++ +s s++++ L++ r++G+
  EHU01996.1 184 HTLVSSSALREELARVRQQGY 204
                 667899************998 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.6e-05     0.071      26      88 ..      32      91 ..      29     115 .. 0.84
   2 ?    1.6   0.0      0.16   2.1e+02      87     110 ..     240     263 ..     225     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
     DUF4423 26 irellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkdedgkyrqtekslttsse 88
                +++  p + +  +++++++r++  i+ + v+++l +L klg++  +  ++++   + lt +++
  EHU01996.1 32 LQAFTPQRRV-MSVSQISQRTG--IPRAAVRRCLYTLSKLGFVYAEDGKNFELRPRVLTLGHN 91
                5566667777.899********..*******************99888888888777776555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
     DUF4423  87 sevkseavrsyhkqmlelAieale 110
                  +v+++ +r++h  +l++A++ + 
  EHU01996.1 240 GQVSADTLRQHHLPLLQEAAREIS 263
                 6789999************99875 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.6e-06     0.012      28      57 ..      42      71 ..      38      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.6e-06
                BEHHHHHHHHSSTHHHHHHHHHHHHHTTSE CS
       HTH_9 28 ltlrelvkktkLsldqVkksLvvLiqhrlV 57
                 ++++++++t++++  V++ L++L ++++V
  EHU01996.1 42 MSVSQISQRTGIPRAAVRRCLYTLSKLGFV 71
                589*************************99 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   7.8e-05       0.1       8      51 ..      34      76 ..      27      77 .. 0.81
   2 ?    0.7   0.0      0.39   5.1e+02      27      44 ..     187     204 ..     174     207 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
      HTH_11  8 lLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepg 51
                 +  +r  +s +++++++++ r++vrr + +L++lg  +++e g
  EHU01996.1 34 AFTPQRRVMSVSQISQRTGIPRAAVRRCLYTLSKLG-FVYAEDG 76
                554456669***************************.6666655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.39
      HTH_11  27 vSrrtvrrdIkaLeelgv 44 
                 vS ++ r  +++ + +g+
  EHU01996.1 187 VSSSALREELARVRQQGY 204
                 555555555555555555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.2e-05     0.041      16      47 ..      39      71 ..      29      72 .. 0.81
   2 ?   -2.6   0.0       3.3   4.2e+03      33      43 ..     168     178 ..     163     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.2e-05
      HTH_24 16 pr.isqreLAerlglSpstvnrrlkrLeeeGlI 47
                 r +s +++++r+g+++++v+r+l  L + G++
  EHU01996.1 39 RRvMSVSQISQRTGIPRAAVRRCLYTLSKLGFV 71
                555999*****************9888888876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
      HTH_24  33 tvnrrlkrLee 43 
                 ++n +l rL++
  EHU01996.1 168 PLNDYLARLTQ 178
                 78999999975 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     4e-05     0.051      73     109 ..      43      79 ..      34      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4e-05
        RP-C  73 sNaqLsralglsestlrrhlaaLveaGliirrDspng 109
                 s  q+s+++g++++++rr+l  L ++G++   D  n 
  EHU01996.1  43 SVSQISQRTGIPRAAVRRCLYTLSKLGFVYAEDGKNF 79 
                 66899****************************9985 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00017      0.22      14      54 ..      30      71 ..      28      75 .. 0.92
   2 ?   -1.8   0.0       2.6   3.3e+03      24      34 ..     186     196 ..     162     203 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
                HHHHHH.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
      HTH_20 14 rilraL.araegltaselaerldlskntlsyHLrvLeeagLv 54
                ++l+a+ ++++ +++s++ +r +++++ +++ L +L++ g+v
  EHU01996.1 30 EVLQAFtPQRRVMSVSQISQRTGIPRAAVRRCLYTLSKLGFV 71
                689999999**********************99999999987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
                 TB-HHHHHHHH CS
      HTH_20  24 gltaselaerl 34 
                  ++ s+l e+l
  EHU01996.1 186 LVSSSALREEL 196
                 34455555555 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014      0.18      68      99 ..      42      73 ..      26      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
                EEHHHHHHHSTSXHHHHHHHHHHHHHTTSEEE CS
       RPA_C 68 vhvdeiaqklrlsvndvkqavdeLsneGiiYs 99
                ++v++i+q+++++ + v++ + +Ls+ G +Y+
  EHU01996.1 42 MSVSQISQRTGIPRAAVRRCLYTLSKLGFVYA 73
                899****************************6 PP

>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00032      0.41     554     589 ..      31      66 ..      22      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00032
      Cullin 554 vLllFndeeeklsyeeiqeatglpekeLkrtLqsLa 589
                 vL +F  ++  +s+++i+++tg+p + ++r+L  L+
  EHU01996.1  31 VLQAFTPQRRVMSVSQISQRTGIPRAAVRRCLYTLS 66 
                 8999*99889**********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2195.84
//
Query:       EHU01997.1  [L=396]
Description: cystathionine beta-lyase, PLP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-117  390.6   0.0     6e-117  390.4   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00098   18.2   0.1     0.0014   17.6   0.1    1.2  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.15   10.6   0.0       0.22   10.0   0.0    1.2  1  Met_gamma_lyase  Methionine gamma-lyase


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.4   0.0    1e-120    6e-117       1     381 [.       7     391 ..       7     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 390.4 bits;  conditional E-value: 1e-120
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS.-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-T CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea...fageekg.yeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallka 90 
                      +T+lv ag++k+ ++g+v+++i+++s+++f++v+e+   +ag++kg  +Y+R+g+ t+ +l++++++Legg+ ++++++G aA+++aila+++a
       EHU01997.1   7 DTTLVSAGRDKRYTQGSVNAVIQRASSLVFDTVAEKkraTAGRAKGeLFYGRRGTLTHFALQDAMTELEGGAGCVLYPCGAAAVSNAILAFVEA 100
                      699******************************99999988888888*********************************************** PP

                      TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGTTTHTTTS CS
  Cys_Met_Meta_PP  91 GdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkag..vlvvvDntfaspllq 182
                      Gd++++s  +Y++tq++++k+l kl+++++++d    +++++ i++nt++v+lE+p++++++v D+++i+++++++   +++++Dnt+a+++l+
       EHU01997.1 101 GDHVLMSGAVYEPTQDFCTKILAKLQVSTTWFDHGIGDAIATLIQPNTRVVFLESPASITMEVQDVPAIVAAVRAKApdAIIMIDNTWAAGVLF 194
                      ************************************************************************9999888*************** PP

                      -GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEE CS
  Cys_Met_Meta_PP 183 rplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekv 276
                      rpl+lg+Di+++++TKyl Ghsd+++G++v++++++ +   +   + +G+++++++a++  rGl+TL++Rl++h+e+Al+vAe+L++ p+v +v
       EHU01997.1 195 RPLALGVDISIQAGTKYLIGHSDAMIGTAVANARCWEQL--RENSYLMGQMVDADTAYMASRGLRTLGVRLRQHEESALQVAEWLAARPEVARV 286
                      ******************************999666555..55678************************************************ PP

                      E-TTSTTSTTHHHHHHHSSSG-SEEEEEESSHH..HHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS CS
  Cys_Met_Meta_PP 277 yYpglpshpqhelakkqlkgaggvlsFelksee..ekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiE 368
                      ++p+lps+p+h +++++++g++g++sF lk+++  e+ + ++d+++ fs+a+s+Gg+esli + + ++ a+i++    + +   +l+Rl++G+E
       EHU01997.1 287 NHPALPSCPGHAFWQRDFSGSSGLFSFVLKEKLsrEQLAMYLDHFQHFSMAYSWGGYESLILASQPEELAAIRPAGGVDFS--GTLVRLHIGLE 378
                      ********************************9999999***********************************9877665..59********* PP

                      -HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 369 dvdDliaDlkqal 381
                      +vdDl+ Dl++++
       EHU01997.1 379 HVDDLLVDLDAGF 391
                      **********998 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.4e-07    0.0014      80     232 ..      93     245 ..      84     265 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-07
                  HCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHT..T-EEEEE CS
  Aminotran_5  80 slarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkk..galvlvD 175
                  ++++ +++gd+++++     a   p q+ + +  ak++v +   + +   d++++l++++t++v++    ++t  +q+v++i++++++k  +a++++D
   EHU01997.1  93 AILAFVEAGDHVLMSG----AVYEPTQDFCTKILAKLQVSTTWFD-HGIGDAIATLIQPNTRVVFLESPASITMEVQDVPAIVAAVRAKapDAIIMID 185
                  4444477777777765....5666777777777777776655333.3334899********************************999558******* PP

                  -TTTTTTS---HHHHTESEEEEETTT.TTSS..TT-EEEEEEHHHHHTS...SS.STTSEE CS
  Aminotran_5 176 aaqavghipidvkklgvDflafsghK.llgP..tGiGvlyvrkellekl.eplllggemve 232
                   + a+g   +   +lgvD+    g K l+g   + iG  ++  + +e+l e  +l g+mv+
   EHU01997.1 186 NTWAAGVL-FRPLALGVDISIQAGTKyLIGHsdAMIGTAVANARCWEQLrENSYLMGQMVD 245
                  98777765.4445799999999999955443113466666666667777445556666665 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   3.8e-05      0.22     147     217 ..     139     204 ..     132     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.8e-05
  Met_gamma_lyase 147 avkeaikektkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadli 217
                      a+++ i+++t+++ +          +++++++  i+++v++  +d i+++dn +   v    P ++G+d+ 
       EHU01997.1 139 AIATLIQPNTRVVFLESPAS----ITMEVQDVPAIVAAVRAKAPDAIIMIDNTWAAGVL-FRPLALGVDIS 204
                      67788888888888876544....5689*************************998875.56999999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3038.84
//
Query:       EHU01998.1  [L=219]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-19   69.5   5.9    3.4e-19   69.5   5.9    1.7  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.026   14.4   0.5      0.039   13.9   0.5    1.2  1  TMEM154      TMEM154 protein family
       0.11   12.2   0.6       0.26   10.9   0.6    1.6  1  Tetraspanin  Tetraspanin family
       0.12   12.1   0.6       0.24   11.2   0.6    1.5  1  DUF4448      Protein of unknown function (DUF4448)
        2.6    7.6   7.9         13    5.4   0.6    2.2  2  PIRT         Phosphoinositide-interacting protein family


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   5.9   9.5e-23   3.4e-19       1     119 [.      48     173 ..      48     174 .. 0.95
   2 ?   -2.2   0.1       1.5   5.4e+03      16      24 ..     196     204 ..     181     211 .. 0.47

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 9.5e-23
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka...lerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++ ll++aG+++     +++ ++l++ ++a+lG++l+yl gr+lg+ +l++ +l + ++++   +  +++r+g +all++r+l+++ r++++ +aG
   EHU01998.1  48 LPGDSLLLLAGAMVakgvmDFFPTLLILTTAASLGCWLSYLQGRWLGNTRLVKSWLMQLPAQYhqrAWNMFNRHGLMALLVGRFLAFI-RTILPTMAG 144
                  6999***9999999999999999**********************************99999977777889*****************.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylGs 119
                  +++++  rF l+++++ ++w+ ++++lG+
   EHU01998.1 145 ISGLKNSRFQLFNWLSGLLWVGIVVTLGY 173
                  ***************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
  SNARE_assoc  16 lllgtlvts 24 
                  +++ ++v +
   EHU01998.1 196 PMVLLVVGL 204
                  222233333 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5   1.1e-05     0.039      50      87 ..     182     218 ..     176     219 .] 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
     TMEM154  50 snesdqlelvlmiiiPlvllillllvviiliqkkkrkr 87 
                 + ++dq+  vlm+ +P+vll++ l+  i++i kk+r+r
  EHU01998.1 182 KRHEDQVMAVLMV-LPMVLLVVGLVGSIVVIWKKRRQR 218
                 5678899999997.5*******9999999999999988 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   7.4e-05      0.26      10      75 ..     155     214 ..     150     217 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.4e-05
                  XXXXXXXXXXXXXXXXXXX...XXX.....................XXXXXXXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  10 llfwligivllavGvwlrl...khaeaalacllsesaedpailaillivvGvllfllgflGcigalken 75 
                  l+ wl g++ +++ v l +   +          +++  +  +   +l+v+ ++l+++g++G i ++ ++
   EHU01998.1 155 LFNWLSGLLWVGIVVTLGYgisQ---V---PFIKRHEDQVMA---VLMVLPMVLLVVGLVGSIVVIWKK 214
                  55555555555443333222111...1...122223333444...59**************88855443 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   6.6e-05      0.24     152     187 ..     183     218 ..     163     219 .] 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
     DUF4448 152 gkkaekyalaialPvvvvvlvlgligfvlwnrkkrd 187
                 +++ +  a+ ++lP+v++v+ l+  ++v+w++++ +
  EHU01998.1 183 RHEDQVMAVLMVLPMVLLVVGLVGSIVVIWKKRRQR 218
                 5566778899**********9999999999998765 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.6    0.0037        13      40     115 ..     112     188 ..     100     194 .. 0.78
   2 ?    5.1   2.9    0.0044        16      89     115 ..     191     218 ..     187     219 .] 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0037
        PIRT  40 rskwdvykk.piivlsvGgavfllGvvittlsrnstlknkdkevfk.lsGpaflslGlml.lvcGlvwvpiikkkrkqr 115
                 + +w+++++  ++ l vG  + ++ +++ t++  s lkn+  ++f+ lsG  +l +G+++ l +G+  vp ik+ + q 
  EHU01998.1 112 QRAWNMFNRhGLMALLVGRFLAFIRTILPTMAGISGLKNSRFQLFNwLSG--LLWVGIVVtLGYGISQVPFIKRHEDQV 188
                 67899997626788999999999999999999999999999888861455..566776652679********9988775 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0044
        PIRT  89 aflslGlmllvcGlv.wvpiikkkrkqr 115
                 +++ l ++llv+Glv  + +i kkr+qr
  EHU01998.1 191 VLMVLPMVLLVVGLVgSIVVIWKKRRQR 218
                 56778899*******5589999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1784.16
//
Query:       EHU01999.1  [L=275]
Description: 2,5-diketo-D-gluconate reductase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-52  177.9   0.1    6.3e-50  170.0   0.1    2.0  1  Aldo_ket_red   Aldo/keto reductase family
  ------ inclusion threshold ------
      0.056   13.4   0.0       0.16   11.9   0.0    1.7  2  Peptidase_S49  Peptidase family S49


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.1   7.1e-54   6.3e-50       2     292 ..      18     260 ..      14     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 7.1e-54
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   lglG w      + s+e+a +++ +al+ G++ +DtA +Y   ++ee +G+al++  + re+++i+tK+        ++  ++n++++le+sl++L+
    EHU01999.1  18 LGLGVW------QASMEDARNAVLKALDVGYRSIDTAAAY---KNEEAIGQALQETDVAREDIFITTKL--------WNADQQNVQQALETSLQKLK 97 
                   566666......56689***********************...**************************........88999*************** PP

                   -S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGG CS
  Aldo_ket_red  99 tdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggG 195
                   +++vDl+l+H+p p+ +++ ++++ +  ++++G++++iGv+nf+  +l++++++ +v++v++q+e +++  l+++ l    + +++++  +spl++G
    EHU01999.1  98 LEQVDLYLMHWPCPEKDQYVDAWKNMIAMQQQGLVKSIGVCNFNQPHLKRLLEETGVTPVINQIELHPM--LQQRTLHAWNAMHQIQTESWSPLAQG 192
                   *********************************************************************..999999999999************98 PP

                   TTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 196 lltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                         +                           e++++lak++g+++aq+++r+ l  + + +vip++ +++++e+n+++++++l++ e++e+++l
    EHU01999.1 193 GEG---V------------------------FDQEIIKSLAKKYGKTPAQIVIRWHL--DSGLVVIPKSVTPARIEENFNVFDFRLDKAEMSEIAQL 260
                   533...1........................23589*********************..***********************************997 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.47   4.2e+03      74      96 ..      71      93 ..      58      97 .. 0.73
   2 ?   11.9   0.0   1.8e-05      0.16      23      62 ..     116     156 ..     113     175 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.47
                   CCTTSS--HHHHHHHHHHHHHHH CS
  Peptidase_S49 74 vslrrelteeereilqrlldety 96
                   ++++ +l ++ ++++q+ l+ + 
     EHU01999.1 71 IFITTKLWNADQQNVQQALETSL 93
                   46677777777888888877665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.8e-05
                    HHHTTSSEEEE-TT-EEE---EE.EEEEE-HHHHHHTT-EE CS
  Peptidase_S49  23 ylasaadkivanpstivgsiGvi.tqllnlenlldklgvev 62 
                    y+ +  + i ++++++v siGv  ++ ++l++ll+  gv+ 
     EHU01999.1 116 YVDAWKNMIAMQQQGLVKSIGVCnFNQPHLKRLLEETGVTP 156
                    66666789**************84799***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.53
# Mc/sec: 1572.85
//
Query:       EHU02000.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-98  328.9   3.5    1.9e-97  326.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.2   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  326.1   0.0  2.4e-100   1.9e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU02000.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 326.1 bits;  conditional E-value: 2.4e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02000.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02000.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02000.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02000.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02000.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU02000.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02000.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02000.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02000.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02000.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU02000.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02000.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU02000.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02000.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU02000.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02000.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU02000.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02000.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU02000.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02000.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU02000.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02000.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02000.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02000.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02000.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02000.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02000.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02000.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU02000.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU02000.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU02000.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU02000.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU02000.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02000.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02000.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1037  (0.0578393); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.73u 0.33s 00:00:01.06 Elapsed: 00:00:01.13
# Mc/sec: 1394.68
//
Query:       EHU02001.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02001.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 870.10
//
Query:       EHU02002.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02002.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02002.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02002.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02002.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 813.58
//
Query:       EHU02003.1  [L=476]
Description: divisomal assembly stabilization protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-23   83.0   0.1    6.6e-23   81.0   0.1    2.1  2  Cu-oxidase_3  Multicopper oxidase
    2.7e-11   43.3   0.0    5.5e-11   42.3   0.0    1.5  1  Cu-oxidase_2  Multicopper oxidase
    3.1e-06   27.4   0.0    6.4e-06   26.4   0.0    1.5  1  Cu-oxidase    Multicopper oxidase
  ------ inclusion threshold ------
       0.02   14.7   0.2       0.02   14.7   0.2    2.0  2  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1   1.5e-26   6.6e-23       6     117 ..      59     170 ..      54     172 .. 0.89
   2 ?   -1.9   0.0      0.72   3.2e+03      94     116 ..     451     473 ..     438     475 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 1.5e-26
                   EEECTTEE.SEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--T CS
  Cu-oxidase_3   6 tvsplggt.erevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshls 101
                   ++s+ g + + +v+++Ng+++gpt++v +gd+v++ ++N+l+e++s+++ Glq+++      + g++ +++++g ++ + ++++q+a+t+wYh+++ 
    EHU02003.1  59 HWSFYGDNnKVPVWGINGMYLGPTVRVYSGDDVKLIYSNRLNEPVSMTVSGLQVPGA-----LMGGAPRMMSAGVDWAPVLPIRQNAATCWYHANTP 150
                   555555443689*********************************************.....7777777***************************9 PP

                   T...HHH.TT-EEEEEEE-H CS
  Cu-oxidase_3 102 l...qqa.aGlaGaiiiedk 117
                   +    ++ +GlaG+++ied+
    EHU02003.1 151 NrmaPHVyNGLAGMWLIEDD 170
                   98884556*********986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.72
                   EEEEE--TTHHHTT-EEEEEEE- CS
  Cu-oxidase_3  94 lwYhshlslqqaaGlaGaiiied 116
                   + Y+s++     +G aG +++++
    EHU02003.1 451 FVYYSQTLELADRGTAGQLLVQP 473
                   6788888887679*****99987 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.2e-14   5.5e-11      23     135 ..     363     473 ..     344     475 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.2e-14
                   E......ETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES...S-E CS
  Cu-oxidase_2  23 t......ngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad..npG 111
                          ng+ +++n+ + t+++g++++++i ++ +   ++H+ G+ f + + ++++       s+  e+ +++dtv+v+++ ++ + f++   +  
    EHU02003.1 363 GdsmpgiNGAVWDMNRIDTTAQQGTFERWIIRADRPQ--SLHIQGVMFLIKSVNGAQ-------SM-GEDRGWKDTVWVDGEVELLVNFTQSssDHF 449
                   1445667999***********************9985..**********99888777.......33.389********************9622555 PP

                   EEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2 112 vwllHCHilwHldqGmalqfvvrp 135
                   ++++ ++ l+ +d+G a+q++v+p
    EHU02003.1 450 PFVYYSQTLELADRGTAGQLLVQP 473
                   6********************997 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.4e-09   6.4e-06      70     129 ..     233     293 ..     203     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.4e-09
                 EEEEEEEESSS-BEEEEETSB.-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE-SSSE CS
  Cu-oxidase  70 yrlriinvsaddslnfsIeGH.kltVvevDgvyve.pvevdsldIavGqrysvlvtanqapg 129
                  rlr+ n+s+   + +sI +   +tV+++D  +   pv v++l +a+G+r +vlv+++q  +
  EHU02003.1 233 MRLRLLNASNARRYELSISDNrPFTVIASDQGFLPsPVAVQRLTLAPGERREVLVDMSQ-GD 293
                 69****************76659***********99*********************99.44 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   4.5e-06      0.02       1      20 [.       2      21 ..       2      27 .. 0.84
   2 ?   -3.5   1.1       2.5   1.1e+04      12      17 ..     299     304 ..     298     306 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
  TAT_signal  1 klSRRdFLKgsAAaaAAaal 20
                ++SRR+F++ sA++a  a++
  EHU02003.1  2 SFSRRQFIQLSAGVALSATV 21
                59*************77765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.5
  TAT_signal  12 AAaaAA 17 
                 A++aA+
  EHU02003.1 299 AGTAAG 304
                 445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 4193.60
//
Query:       EHU02004.1  [L=245]
Description: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-31  107.6   0.0    6.2e-31  106.8   0.0    1.4  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
       0.05   13.8   0.0      0.098   12.9   0.0    1.4  1  UPF0060          Uncharacterised BCR, YnfA/UPF0060 family
       0.11   11.8   0.4       0.28   10.5   0.0    1.8  2  DUF4191          Domain of unknown function (DUF4191)


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0     1e-34   6.2e-31       7     135 .]      58     180 ..      52     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 1e-34
  Acyltransferase   7 lenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegkl.vviFP 99 
                       e   + g+ai++aNHq ++D+++ + ++     ++++v+++kk+ll+ip++g+l++l+g   idR+++a+a+g++ ++++ ++++++  ++FP
       EHU02004.1  58 PEGADNYGNAIYIANHQNNYDMVTAAKIV-----QPTTVTVGKKSLLWIPFFGQLYWLTGNLLIDRDNRAKAHGTIGELVDQFNKKRIsFWMFP 146
                      45556689*********************.....89********************************************************** PP

  Acyltransferase 100 EGtrsregellpfkkGlvrlaakakkgvpivPvais 135
                      EGtrsr ++llpfk+G++++a+ a  gvpi+P+++s
       EHU02004.1 147 EGTRSRGRGLLPFKTGAFHAAVAA--GVPIIPIVVS 180
                      ************************..*******985 PP

>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.098      35      95 ..      10      70 ..       4      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
     UPF0060 35 alvaaillavygflatlqpaafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalial 95
                 ++ +il+ v+g +  l ++   r  a++G +f  l+ l+gl+v+  +++  d  G +i +
  EHU02004.1 10 VVIYSILVCVFGCIWCLFSPRNPRHVATFGHLFGKLSTLFGLKVELRRPEGADNYGNAIYI 70
                55678999******************************************99999988865 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.4       0.2   1.2e+03      32      47 ..       9      24 ..       1      57 [. 0.45
   2 ?   10.5   0.0   4.6e-05      0.28     128     178 ..     147     198 ..     142     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.2
     DUF4191 32 aflvvvvvfvvlglll 47
                ++++  ++++v+g+++
  EHU02004.1  9 IVVIYSILVCVFGCIW 24
                2222222222222222 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 4.6e-05
     DUF4191 128 EGnkkrvkkllaqekkr.ikrvvadvpvyeivvGngegqvplkkLqktlkkl 178
                 EG ++r + ll  ++   ++ v+a+vp+  ivv n  ++++l++L++ l  +
  EHU02004.1 147 EGTRSRGRGLLPFKTGAfHAAVAAGVPIIPIVVSNTHNKINLNRLKNGLVIV 198
                 788888888887666551567888*********************9987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1768.38
//
Query:       EHU02005.1  [L=757]
Description: DNA topoisomerase IV, subunit A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.1e-133  443.2   0.0   1.1e-132  443.0   0.0    1.0  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    1.1e-15   56.8   0.0    9.2e-09   34.6   0.0    3.8  4  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
  ------ inclusion threshold ------
      0.017   15.4   2.0      0.044   14.1   2.0    1.7  1  Lzipper-MIP1   Leucine-zipper of ternary complex factor MIP1
        0.2   12.2   2.0       0.45   11.0   2.0    1.5  1  DUF4890        Domain of unknown function (DUF4890)
        0.6   10.1   7.3        1.3    9.0   7.3    1.5  1  SWIRM-assoc_1  SWIRM-associated region 1


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.0   0.0    3e-136  1.1e-132       1     425 [.      33     469 ..      33     470 .. 0.96

  Alignments for each domain:
  == domain 1  score: 443.0 bits;  conditional E-value: 3e-136
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkd.AaaRYiet 94 
                    Ra+P + DGlKPvqRri+yam++l ln++ k+kK+a++vG+vlgkYhPHGd+++y+a+v +aq f++++pl+d+qGn+G   d+ k+ Aa+RY+e 
     EHU02005.1  33 RALPYIGDGLKPVQRRIVYAMSELgLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP-DDPKSfAAMRYTES 127
                    9********************************************************************************.888889******** PP

  DNA_topoisoIV  95 rLskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptgg 187
                    rLsk+a+ ll e+ + t d+++n+Dg+++EP++lp+++Pn+L+nG++GIavGmat+ipphnl+e+ +a+ial++++++    lle+v+gPdfpt +
     EHU02005.1 128 RLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDDPKTsldALLEIVQGPDFPTEA 223
                    ****************************************************************************9999999************* PP

  DNA_topoisoIV 188 gii.gkeeikeayetgrGkikvrakveieektivitElPigvntskliekieelvkkkkik.isdirdesdr..gvrivielkr.gaseekvlekl 278
                    +ii  ++ei++ y++grG+i++ra +++e+ ++vit lP +v+ +++ e+i++ +++kk+  ++d+rdesd+   +r+vi  ++ +++ ++v+++l
     EHU02005.1 224 EIItPRDEIRKIYQNGRGSIRQRAVWKKEDGEVVITALPHQVSGARVLEQIASQMRNKKLPmVEDLRDESDHenPTRLVIVPRSnRVDLDQVMNHL 319
                    999899*********************999***************************************7766889999998776999******** PP

  DNA_topoisoIV 279 ykktkLessisvnnlvlfdk.kpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLiee.. 371
                    +++t+Le+s+++n++++  + +p +++l eil+e+l +r+++++rr++++le++ +rl+il+gll+a+ +idevi++ir++   ++ k  L+++  
     EHU02005.1 320 FATTDLEKSYRINLNMIGLDnRPAVKNLLEILSEWLVFRRDTVRRRLNHRLERVLRRLHILDGLLVAFINIDEVIHIIRTE---DEPKPVLMSRfe 412
                    *************888876648**********************************************************9...56999****999 PP

  DNA_topoisoIV 372 lseeqaeyllemrlrrLtkeeveklekeieelekeikelekllak...lkklikeel 425
                    +se+qae++le++lr+L+k+e++k++ e++eleke ++l+++la+   +++l+k+el
     EHU02005.1 413 ISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQATLASerkMNTLLKKEL 469
                    ********************************************9887888888877 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.2   7.2e+02      14      46 ..     226     262 ..     225     264 .. 0.71
   2 ?   -2.2   0.0      0.86   3.1e+03      10      36 ..     554     579 ..     552     586 .. 0.79
   3 !   16.9   0.0   8.7e-07    0.0031       2      46 ..     597     639 ..     596     641 .. 0.91
   4 !   34.6   0.0   2.6e-12   9.2e-09       1      47 [.     645     696 ..     645     697 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.2
                    EEEGGGS-BT-TTSCTEEGS......ETTTTSSEEEEEE CS
  DNA_gyraseA_C  14 rfplselpeqgRgakGvkgi......klkegdklvsvlv 46 
                     +p +e++ +  +++G   i      k ++g+ ++++l+
     EHU02005.1 226 ITPRDEIRKIYQNGRGS--IrqravwKKEDGEVVITALP 262
                    68889999999999997..33466677777777777765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.86
                    SEEEEEEGGGS-BT-TTSCTEEGS.ETT CS
  DNA_gyraseA_C  10 GyvkrfplselpeqgRgakGvkgi.klk 36 
                    G+ + ++  +lp+ +  ++G ++  kl+
     EHU02005.1 554 GRSYTLDPTSLPSAR--GQGEPLTgKLT 579
                    888999999999999..99998876665 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 8.7e-07
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEE CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlv 46 
                     ll+++++Gy++ +  ++l + +R+  G+ + +l e+ ++ + + 
     EHU02005.1 597 RLLMASDAGYGFICTFNDLISRNRA--GKALLTLPENARVMTPMA 639
                    59*****************999999..**********99987665 PP

  == domain 4  score: 34.6 bits;  conditional E-value: 2.6e-12
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS.....ETTTT.SSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgi.....klkeg.dklvsvlvv 47 
                    d+ll iT++G+++ fp+ elp++++g kG+k+i     +   g dkl  ++++
     EHU02005.1 645 DMLLAITQAGRMLMFPVGELPQMSKG-KGNKIIsipsaDAAAGtDKLAWLMIL 696
                    89************************.******99999777777999888776 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.0   1.2e-05     0.044       5      38 ..     440     473 ..     437     499 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
  Lzipper-MIP1   5 krssLeqeveqLqerLqeeeklrraLekalssss 38 
                   ++s+Le+e  qLq +L  e+k++++L+k l++ s
    EHU02005.1 440 EQSELEKERDQLQATLASERKMNTLLKKELQADS 473
                   689***************************4333 PP

>> DUF4890  Domain of unknown function (DUF4890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   0.00013      0.45      26      94 ..     409     476 ..     404     487 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
     DUF4890  26 keYsLnetqkkqLlElNlalvekmgdrpmrlkrdakrkkdkrdrkkaqatkkeerekkrkemkaareaY 94 
                  ++ ++etq + +lEl l+ + k++++  r ++ + +k++ + ++ + a +++     +ke++a+ +++
  EHU02005.1 409 SRFEISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQATL-ASERKMNTLLKKELQADSNSF 476
                 57899*********************998888888877774444433.334444445667788777766 PP

>> SWIRM-assoc_1  SWIRM-associated region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.3   0.00037       1.3      37      67 ..     422     453 ..     411     470 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00037
  SWIRM-assoc_1  37 lelKLkqfeelEkl.leaerrelekqrqqLll 67 
                    lelKL+++++lE++ ++ e+ elek+r qL  
     EHU02005.1 422 LELKLRHLAKLEEMkIRGEQSELEKERDQLQA 453
                    8************96788***********964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4896.58
//
Query:       EHU02006.1  [L=156]
Description: PTS system fructose-specific IIA component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-31  109.2   0.0    1.8e-31  109.0   0.0    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   9.8e-36   1.8e-31       2     143 ..       6     149 ..       5     150 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 9.8e-36
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCCBSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarleavkkpaiavlklkepvdfeasdgkpvkliflla 100
                 +lt+ +++l+l+a+ske ai +l+++l  +ga++++e+++ +++ re ++stg++n +AiPH+++ avk++ +a+++ +  + +e+ dg +v+ i+l+a
  EHU02006.1   6 ILTPCRVNLNLQASSKEAAIIELTELLFSDGAISDKEAFIRDVWLREAEGSTGFENHIAIPHGKSSAVKQTTLAIGRSQLDIPWETLDGSKVRCIILFA 104
                 678889********************************************************************************************* PP

                 -SSCHH...HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHCH CS
  PTS_EIIA_2 101 lpekdae..hlkilaqLaellkdeefvekLrkakseeeilellee 143
                 +  +d++  h+++l+q+a  l d+e++ +L+  +++ ei++l+++
  EHU02006.1 105 VRLEDQNttHIRLLSQVASALADDEVIAQLLVENDPSEIIRLFSQ 149
                 **999999*********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1196.85
//
Query:       EHU02007.1  [L=104]
Description: PTS system fructose-specific IIB component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-17   63.3   1.1    3.1e-17   63.1   1.1    1.1  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   1.1   1.7e-21   3.1e-17       2      85 ..       5      91 ..       4      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.7e-21
                EEEEESSSHHHHHHHHHHHHHHHHHCT....EEEEETTEE..GGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHH CS
     PTS_IIB  2 illaCgaGmatSlmaaeklekaakelg....ieaegeagv..eleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdge 85
                 ++aC aG+a++++a+ek+ k a +lg    +e++g+ g+  +l+ae ia+ aD+v+la +v++  ++rf gkp+++++++ ++  + + 
  EHU02007.1  5 CVAACTAGIAHTYIAREKMIKGAHALGhtihVETQGTIGTenALDAETIAA-ADVVILAVDVKITGEERFRGKPIVRVKTEVVI--KSPI 91
                589**************************************9999999999.***************************99988..6555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 869.49
//
Query:       EHU02008.1  [L=363]
Description: PTS system fructose-specific IIBC components [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-12   47.0  31.9    2.5e-11   43.2  31.9    2.2  1  PTS_EIIC         Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2  31.9   1.4e-15   2.5e-11       3     315 ..      19     272 ..      17     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.4e-15
    PTS_EIIC   3 gfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvlll 101
                 g++ +ipl++a+Gi ++lg++            +v + ++++a++l+q+g+  ++++++l++++iay++   +++ ++++ ++g++             
  EHU02008.1  19 GISWMIPLIVAAGICIALGQVIGG--------PDVGKHPGTIAWMLNQIGGWGMGLIVPLISAAIAYSI--ADRPGFAPGLIVGFIC------------ 95 
                 7889****************3322........456667788999*************************..7888888*********............ PP

    PTS_EIIC 102 aagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsgs 200
                                ++ +tg++g+i+ g+l++y +  + +   i+LP+s + +   +  p ++t+++ l+    + +i+++i ++  al+ ll +++ 
  EHU02008.1  96 ---------------GQIGTGFIGGILGGFLVGYTVILLRR--SIRLPQSMQGLMPIMVLPVLSTIIAGLL---MMTFIGQPIVWLQKALIALLESMQ- 173
                 ...............5669**********************..8**********************55555...566666666666666666677777. PP

    PTS_EIIC 201 llgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflfG 299
                 + + +i+g++ +++  f+ ++++++++ +++  g l      +yg +              + G + +++++ + ++l++ + ++ +  ++ + +fl+G
  EHU02008.1 174 GGSKFIMGAILGAMATFDFGGPVNKTMSLFAD-GMLVD---GIYGPE-----------AVKFAGSMIPPFGITLSWLLTRHKYTRAEKEALKA-AFLMG 256
                 7799************************9886.44444...355531...........22556666666666666666666666666666555.56788 PP

    PTS_EIIC 300 ItepleFgfpfvlnll 315
                 I  + e  +p+ ++ l
  EHU02008.1 257 ICMITEGVIPIAARDL 272
                 8777777788877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2963.84
//
Query:       EHU02009.1  [L=283]
Description: tagatose-1,6-bisphosphate aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-75  252.8   0.0    4.6e-75  252.7   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
      0.036   13.6   0.4      0.088   12.4   0.1    1.7  2  Peripla_BP_4   Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.7   0.0   5.2e-79   4.6e-75       3     278 ..       5     280 ..       3     282 .. 0.93

  Alignments for each domain:
  == domain 1  score: 252.7 bits;  conditional E-value: 5.2e-79
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHHH CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaiea 98 
                    +++l+ +A++++yav a+n+ nle+++a+++aae +++P+Il++ +g+ +++     ++++lv+a+a    +asvp+al lDHg+ +  + +a +a
     EHU02009.1   5 MNDLISQAAQKKYAVLAINCFNLESARAAVKAAEPQRAPLILNVYQGHSRHF--PPAIAVPLVQALAA---EASVPIALALDHGKAFPLIGQAFRA 95 
                    7899*********************************************999..6799999*******...789********************** PP

                    S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------.TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS....--T CS
  F_bP_aldolase  99 gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv.vaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpk..pkLdf 191
                    gf+  MiD+S++pl+eNi++t++vv++ah +gv vE+ElG+i+     + ++++  +T++ ++  f+e+t++d+lAv++G++HG y+++  p++df
     EHU02009.1  96 GFTGLMIDASAEPLAENIRQTARVVDMAHTAGVCVEGELGHIADAPTYAlADAAVKMTQVADVLPFLEQTHIDLLAVSVGTAHGLYPAGvqPTIDF 191
                    *******************************************8885443556669******************************9998888*** PP

                    HHHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHGGE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-S CS
  F_bP_aldolase 192 erlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkkekenkk.ydprkllkeaeeamkevvkekiellgsa 278
                    +rl+++++a   pl+lHGgsg+p ++ir++ ++Gv+KiN+   +  a  +a++++ ++   ++  +ll+ +e+a+ evv +++ + gsa
     EHU02009.1 192 QRLADLHAASsRPLALHGGSGTPADDIRRVSQHGVAKINVGAAVFEAGKQALHQALKHPPtTELPDLLALMESACCEVVSDYLSWSGSA 280
                    ****************************************************7773333335667788889999999999999999886 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.8e-06     0.088      42      85 ..       3      46 ..       2      55 .. 0.93
   2 ?   -2.4   0.0       0.3   2.7e+03      40      71 ..     149     182 ..     137     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-06
                  HHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEE CS
  Peripla_BP_4 42 aeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVva 85
                  a++++ i++a +k++ +++++  + + +++a+k+a+ +  p + 
    EHU02009.1  3 AAMNDLISQAAQKKYAVLAINCFNLESARAAVKAAEPQRAPLIL 46
                  6799********************************99999886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.3
                   -H.HHHHHHHHHHHHTT.-SEEEE--SSHHHHHH CS
  Peripla_BP_4  40 da.aeQvaqiedaiakg.vdgiivapvdstalap 71 
                    +  +Qva +  ++++   d+++v++  + +l+p
    EHU02009.1 149 AVkMTQVADVLPFLEQThIDLLAVSVGTAHGLYP 182
                   4446788888888777778999998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2273.95
//
Query:       EHU02010.1  [L=286]
Description: putative aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-89  298.0   0.0    7.8e-89  297.9   0.0    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
      0.031   13.6   0.0       0.27   10.5   0.0    2.3  3  TMP-TENI       Thiamine monophosphate synthase


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.9   0.0   8.7e-93   7.8e-89       2     279 ..       4     281 ..       3     282 .. 0.94

  Alignments for each domain:
  == domain 1  score: 297.9 bits;  conditional E-value: 8.7e-93
                    HHHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHH CS
  F_bP_aldolase   2 nlkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaie 97 
                    ++ke+l+  +++++a+gafnv ++  ++av+e ae++++P+I+ +++++++++    +a+  +vr+      k+svp  lhlDHga+++++++ai+
     EHU02010.1   4 SMKEMLRPTRQHRFAIGAFNVADSCFIRAVVEEAEATQTPAIISIHPSELEFV---TDAFFGYVRERTL---KSSVPFTLHLDHGASVAHVLRAIQ 93 
                    69************************************************877...4566667777666...689********************* PP

                    HS-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------..TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS....- CS
  F_bP_aldolase  98 agfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv..vaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpk..pkL 189
                    +gf+SvMiDgS lp+eeN+altkevv++aha+gvsvE+ElG+ig +   v   +++ +yTdp +ae+fv++tgvd+lAvaiG++HG y++   p+L
     EHU02010.1  94 CGFTSVMIDGSLLPYEENVALTKEVVKLAHAVGVSVEGELGTIGDTGTTVegGVSKVIYTDPAQAEDFVQRTGVDTLAVAIGTAHGIYPKDmkPEL 189
                    ********************************************8886565445677*******************************9887788* PP

                    -THHHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHGGE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 190 dferlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkkekenkk.ydprkllkeaeeamkevvkekiellgsag 279
                    ++++l++i+++v +plVlHGgs  pd e+++a++lGv KiNi +d+++ay+++v++  + ++  dp++++ ea+ea+k+v++ k++l+g  g
     EHU02010.1 190 QMHILRDISQRVsIPLVLHGGSANPDAEVAEAVTLGVGKINISSDMKYAYFQKVREVLTRETwWDPNVIYPEAIEAAKAVIRYKMNLFGGLG 281
                    ******************************************************9997777789************************9766 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.05   4.5e+02      15      59 ..      84     128 ..      76     130 .. 0.84
   2 ?   10.5   0.0     3e-05      0.27     120     175 ..     172     229 ..     152     235 .. 0.75
   3 ?   -3.3   0.0      0.53   4.7e+03      28      60 ..     244     276 ..     239     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.05
    TMP-TENI  15 llevveealkggvtlvqlRekeldarellelaeklaalcrkygvp 59 
                  ++ v +a++ g t v +    l  +e ++l +++ +l+++ gv 
  EHU02010.1  84 SVAHVLRAIQCGFTSVMIDGSLLPYEENVALTKEVVKLAHAVGVS 128
                 567788999999999999999999999999999999999888875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 3e-05
    TMP-TENI 120 igvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGitl..envaevleagadgv 175
                 +++G+ +    K++++ l ++ l++++++++iP+v  GG     ++vae++  g+  +
  EHU02010.1 172 VAIGTAHGIYPKDMKPELQMHILRDISQRVSIPLVLHGGSANpdAEVAEAVTLGVGKI 229
                 56788888899****************************8752244556666666665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.53
    TMP-TENI  28 tlvqlRekeldarellelaeklaalcrkygvpl 60 
                 + v  Re   d++ ++ +a ++a+++ +y+++l
  EHU02010.1 244 REVLTRETWWDPNVIYPEAIEAAKAVIRYKMNL 276
                 556678888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2335.58
//
Query:       EHU02011.1  [L=249]
Description: cyclohexadienyl dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-40  138.8   0.0    1.9e-40  138.7   0.0    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
     0.0032   17.7   0.2      0.082   13.1   0.0    3.0  3  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
  ------ inclusion threshold ------
      0.046   13.3   0.0       0.15   11.6   0.0    1.7  2  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
      0.075   12.8   0.5          8    6.1   0.0    2.9  3  SBP_bac_11       Bacterial extracellular solute-binding prote


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   4.3e-44   1.9e-40       1     224 [.      25     246 ..      25     247 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 4.3e-44
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 l+v++ +dy+P+s+ +++g ++G d+ +a+ +a++lg kv++vp++w++l++   ++++Dia +++++t +R+++  F qp  + g   lvr +d+   
  EHU02011.1  25 LKVCTTGDYKPYSFLKPDGHYEGLDISMAESLAASLGAKVQWVPTTWKTLMQDFLAKQCDIALGGVSVTLKRQQTAWFAQPLGVDGKIPLVRCADK--- 120
                 79******************************************************************************************9766... PP

                 CCHSSCGCG..TTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTH CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladL..kgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgds 196
                 ++++++++L  +g ++   ag t+e+++ ++l+ +a ++ f ++   +q+L ++++d++++d + + y +k+ p + +   ++pl + e a++++++d 
  EHU02011.1 121 TKYQTVDQLnkPGVRLIEPAGGTNEAFVHSYLP-QAALTLFHDNVTIFQQLVDNKADVMITDASEALYQQKRFPSLCALNPDKPLQYGEKAYMLPRDDM 218
                 56666668855778***************9777.99*************************************************************** PP

                 HHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 197 eLrkainkalaelkadgtlakisekWfg 224
                 ++++ ++++l   +a+g++aki+++W+g
  EHU02011.1 219 SWKQYVDQWLHLSTATGEYAKIAQQWMG 246
                 **************************98 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.8e-05     0.082      64     103 ..      68     107 ..      23     118 .. 0.83
   2 ?   -0.9   0.0       0.4   1.8e+03      71      85 ..     167     181 ..     164     188 .. 0.86
   3 ?   -2.4   0.0       1.2   5.3e+03      56      72 ..     233     249 .]     229     249 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                      TTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESE CS
  Lig_chan-Glu_bd  64 kkewnGmigellekkadlavapltitaeReevvdFtkpfm 103
                       ++w+ ++++ l+k+ d+a++ +++t +R++   F++p  
       EHU02011.1  68 PTTWKTLMQDFLAKQCDIALGGVSVTLKRQQTAWFAQPLG 107
                      458*****************************99999965 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.4
                      HHHHHTTS-SEE-SS CS
  Lig_chan-Glu_bd  71 igellekkadlavap 85 
                       ++l+++kad+++++
       EHU02011.1 167 FQQLVDNKADVMITD 181
                      5799******99986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
                      ----BETTTTEB-HHHH CS
  Lig_chan-Glu_bd  56 kyGskkekkkewnGmig 72 
                      ++G++ +  ++w G+++
       EHU02011.1 233 ATGEYAKIAQQWMGVMK 249
                      57999999999**9985 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.4e-05      0.15      19      74 ..      52     107 ..      50     131 .. 0.85
   2 ?   -1.0   0.0      0.25   1.1e+03     148     165 ..     165     182 ..     139     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
                     HHHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEE CS
  Phosphonate-bd  19 ladyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqa.gvepla 74 
                     +a+ L   lG +v+ v++t   ++++ + a q Dia+ g + +++ ++ a  ++pl+
      EHU02011.1  52 MAESLAASLGAKVQWVPTT-WKTLMQDFLAKQCDIALGGVSVTLKRQQTAwFAQPLG 107
                     7999**************7.9******************999988887763346655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.25
                     HHHHHHHTTSSSEEEEEH CS
  Phosphonate-bd 148 aavlavlsgdadaaavsa 165
                     +  +++++++ad++ ++a
      EHU02011.1 165 TIFQQLVDNKADVMITDA 182
                     445677777777777665 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.017        77     132     176 ..      55      97 ..       7     153 .. 0.71
   2 ?    6.1   0.0    0.0018         8     145     188 ..     161     205 ..     118     213 .. 0.75
   3 ?    1.0   0.0     0.064   2.9e+02      90     125 ..     214     249 .]     207     249 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.017
                 HHHHHHHTEEEEESSH.HHHHHHHHTTT-SEEEEEHHHHH..HSTT CS
  SBP_bac_11 132 llkalekkvvklgess.rqlltaveageadagivyeseakaaengd 176
                 +l a  +  v++++++  +l++++ a++ d++++  s ++    ++
  EHU02011.1  55 SLAASLGAKVQWVPTTwKTLMQDFLAKQCDIALGGVSVTLK---RQ 97 
                 44444444455888887999999999999999999887742...22 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0018
                 SSHHHHHHHHHTTT-SEEEEEHHHHH...HSTTSSEEEE--TTT- CS
  SBP_bac_11 145 essrqlltaveageadagivyeseakaa.engdkleavylpegln 188
                  +  ++++++ +++ad+ i+  sea+++ ++ + l a+++ + l+
  EHU02011.1 161 HDNVTIFQQLVDNKADVMITDASEALYQqKRFPSLCALNPDKPLQ 205
                 44477889999**************88846888998888888776 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.064
                 TT---SHHHHHHSS--EEEE--T-TTTTHH.HHHHG CS
  SBP_bac_11  90 pkkikgwadLlkpglklavadPttspsGlaalalle 125
                 p ++++w++  ++ l l +a+ + +  +++++++++
  EHU02011.1 214 PRDDMSWKQYVDQWLHLSTATGEYAKIAQQWMGVMK 249
                 78999**************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1868.00
//
Query:       EHU02012.1  [L=631]
Description: DNA topoisomerase IV, subunit B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-39  135.4   0.0    2.8e-39  134.4   0.0    1.5  1  DNA_gyraseB    DNA gyrase B
    1.9e-23   82.4   1.9      3e-23   81.8   0.9    1.9  2  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    5.3e-17   62.3   0.1    1.1e-16   61.3   0.1    1.5  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.8e-11   44.2   0.0    4.6e-11   42.9   0.0    1.8  2  Toprim         Toprim domain
    0.00075   19.3   0.1     0.0016   18.3   0.1    1.6  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
  ------ inclusion threshold ------
      0.071   13.4   0.0       0.14   12.4   0.0    1.4  1  TOPRIM_C       C-terminal associated domain of TOPRIM


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   9.4e-43   2.8e-39       1     170 [.     219     385 ..     219     388 .. 0.89

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 9.4e-43
  DNA_gyraseB   1 Glkdfveelnkdkkelikevlsvegekaveevievevalqwtssyse.nilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisged 97 
                  Gl+d++ e +++  +l ++++         +   v++al w  +  e  ++s+vN i+t +GGtHv+g++++l+ +++e+++ +++l++++ k+s ed
   EHU02012.1 219 GLTDYLCEAVNGLPTLPEKPFVGAFAG---DIEAVDWALLWLPEGGElLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAED 312
                  566666666666555555544333333...2256********999998******************************************9.****** PP

  DNA_gyraseB  98 iregltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaark 170
                  i +++ +v+svk+++pqF GQTKe+L++++ +++v+ vv+++++ +l++n ++a++++e a+++a++r++a k
   EHU02012.1 313 IWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSAVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAK 385
                  ********************************************************************98776 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   5.6e+03      17      33 ..     366     382 ..     365     386 .. 0.86
   2 !   81.8   0.9     1e-26     3e-23       2      63 .]     557     621 ..     556     621 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
  DNA_gyraseB_C  17 peqLweTTmdpetRrLl 33 
                    +eqL e +++ ++Rr+ 
     EHU02012.1 366 AEQLAELAISSAQRRMR 382
                    79999*99999999985 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 1e-26
  DNA_gyraseB_C   2 kkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtieda..eeadelfstLmGkk.vepRrefie 63 
                    +k ++qRfKGLGEmnp qL+eTT+dp+tRrL+q+t++d+  e++ +++++L++kk  e+Rr++++
     EHU02012.1 557 GKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVSDDdiEQTLRTMDMLLAKKrSEDRRNWLQ 621
                    689*********************************9876799************9*******97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   3.8e-20   1.1e-16       2     110 ..      29     172 ..      28     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 3.8e-20
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHH CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkkl 84 
                 d +r  ++ ++++dN+v++  a++a+++ev ++    d +++v D+G+G+p+++++              + ++kfs+ ++++ +gg +G+G s+v++l
  EHU02012.1  29 DTTRPNHLGQEVIDNSVDEalAGHAKRVEVILH--A-DQSLEVIDDGRGMPVDIHPeegvpavelilcrlHAGGKFSN-KNYQFSGGLHGVGISVVNAL 123
                 778999999**********65558888899999..5.99*****************************555555****.******************** PP

                 HHHTTTEEEE.......................EEETTTEEEEEEEEES CS
   HATPase_c  85 velmgGeiwv.......................esepgrGttftftlpl 110
                 +++++ ++++                         + + Gt+++f++++
  EHU02012.1 124 SKRVEVNVRRngeiytiafengekvqdltvtgtVAKRNTGTSVHFWPDE 172
                 *987765555666666777766666555554433333669999999886 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.5e-14   4.6e-11       1     101 [.     414     523 ..     414     525 .. 0.83
   2 ?   -3.4   0.0         4   1.2e+04      64      74 ..     534     544 ..     533     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 1.5e-14
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH....HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT.... CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka....lkelakradeiilatDpDreGeaiawellevlk.... 88 
                 el++vEg+s+ +++++a+++++qa+++++G+il+  + + ++v+   e++d+  ++++     +   +r+ +i ++ D+D +G +ia++l  ++     
  EHU02012.1 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEvSSDEVLAsqEVHDISVAIGIdpdsEDLTQLRYGKICILADADSDGLHIATLLCALFVkhfr 512
                 69********************************9996444444477999999999999875444449**********************954444444 PP

                 HHHTTTEEEEEES CS
      Toprim  89 ellenkigrvefs 101
                  l++n  g+v+++
  EHU02012.1 513 TLVKN--GHVYVA 523
                 77777..888876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
                 SEEEEECSSSH CS
      Toprim  64 deiilatDpDr 74 
                 +e+++a+D D+
  EHU02012.1 534 KEVYYALDEDE 544
                 79******996 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   5.4e-07    0.0016       9      47 ..      39      77 ..      37     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.4e-07
  HATPase_c_3  9 elvdNsld....AdaenvkievnknrgktgeivieDdGkGmse 47
                 e++dNs+d    ++a++v++ ++ ++    ++ + DdG Gm+ 
   EHU02012.1 39 EVIDNSVDealaGHAKRVEVILHADQ----SLEVIDDGRGMPV 77
                 89*****9999889999*******85....9**********75 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-05      0.14      36      97 ..     558     623 ..     538     630 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
    TOPRIM_C  36 kwkikYYkGLgtstskeakeyfsn.ldkhlkefkleeeedk...eaielaFskkkaderkewlkkl 97 
                 k +++ +kGLg ++  + +e   +  +++l+++++++++ +   +++++   kk++++r++wl++ 
  EHU02012.1 558 KPNVQRFKGLGEMNPLQLRETTLDpNTRRLVQLTVSDDDIEqtlRTMDMLLAKKRSEDRRNWLQEK 623
                 4567889******9999988755515566778888776544456789****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4588.83
//
Query:       EHU02013.1  [L=193]
Description: esterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-71  240.4   0.0    1.5e-71  240.2   0.0    1.0  1  UPF0227        Uncharacterised protein family (UPF0227)
     0.0055   17.3   2.9     0.0065   17.1   1.2    1.7  2  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.011   15.1   0.1      0.038   13.3   0.0    1.7  2  Hydrolase_4    Serine aminopeptidase, S33
      0.084   12.5   0.0       0.18   11.4   0.0    1.6  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.0   3.4e-75   1.5e-71       2     186 ..       4     188 ..       3     189 .. 0.99

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 3.4e-75
     UPF0227   2 llYlHGFdSSPlshkaqllsqfiaedvlaielsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerfglrqvllnPalkplenlagk 100
                 llYlHGF+SSP+s+ka l +q++ +++++ie++v++l+ +p++a++ le +v  ++ ++++lvGssLGGyyat+l+++f+l +v++nPa++p+e l ++
  EHU02013.1   4 LLYLHGFNSSPRSAKATLFKQWLSQHHPDIEMIVPQLPTFPADAAAMLEDIVLSHSGRQLGLVGSSLGGYYATWLSHCFMLPAVVVNPAVRPFELLVDF 102
                 89************************************************************************************************* PP

     UPF0227 101 lgeeavqstqetyvleeyhiielkalelsrlkrperilvllskqDevldyrravaefraaaeiveddgdHafkdvsehlqqiiafl 186
                 lge+++++t+++yvle++hi++lk+++++ l++p+ +++l++++Devldyr+a+++++a++++ve++g+Haf+++++h+ qi++fl
  EHU02013.1 103 LGENQNPYTGQQYVLESRHIYDLKVMQIDPLEAPDLLWLLQQTGDEVLDYRQALDYYSACRHTVEEGGNHAFTGFERHFPQILDFL 188
                 ************************************************************************************97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.2   1.5e-06    0.0065      27     110 ..      33     104 ..       4     160 .. 0.58
   2 ?    0.5   0.0      0.17   7.8e+02     168     208 ..     135     173 ..     113     184 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
                    CEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC..EEEEES-..----TTTS----T CS
  Abhydrolase_6  27 vhvlapDlpGhGrsdpppldledladlaalldelaa..gggpvvlvGHSlGGalalaaaplalvvgvlldppptalpagllaaale 110
                    ++ ++p+lp +  +          ad aa+l++++   +g++  lvG SlGG++a+ + +   + +v+++p   + p+ ll ++l 
     EHU02013.1  33 IEMIVPQLPTF--P----------ADAAAMLEDIVLshSGRQLGLVGSSLGGYYATWLSHCFMLPAVVVNP--AVRPFELLVDFLG 104
                    44455555555..3..........5556666666556568999*************966666777799999..4444444333333 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
                    T-TTGCEEE.CTT-CHHHHCHHCCCH.STTEEETCE...SSS- CS
  Abhydrolase_6 168 dlpvpllvl.ggeDplvprllerlla.qagarlpvvlpgaGHl 208
                    +   ++ +l  ++D+++   ++++l     +r  +v +g+ H+
     EHU02013.1 135 APDLLW-LLqQTGDEVLD--YRQALDyYSACRH-TVEEGGNHA 173
                    333333.33348999888..8888888777777.888888883 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.4e-06     0.038      51      91 ..      36      76 ..      27      97 .. 0.86
   2 ?   -1.6   0.0      0.29   1.3e+03     194     219 ..     139     164 ..     112     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.4e-06
  Hydrolase_4 51 hvpsfddyvdDlaafvekvkeehpelplfllGhSmGGlial 91
                  vp++ ++ +D+aa++e ++  h++++l l+G S+GG+ a+
   EHU02013.1 36 IVPQLPTFPADAAAMLEDIVLSHSGRQLGLVGSSLGGYYAT 76
                 5788888999***************************9987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.29
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyerlgs 219
                  l+ll+ + D+v d++++ ++y ++++
   EHU02013.1 139 LWLLQQTGDEVLDYRQALDYYSACRH 164
                  67788888888888888777776655 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     4e-05      0.18      51      90 ..      34      78 ..       3      87 .. 0.79
   2 ?   -2.6   0.0      0.74   3.3e+03     217     233 ..     142     158 ..     112     173 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
                   .......CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHH CS
  Abhydrolase_1 51 n......ddygtasvaddldrildalgddkltlvGhSmGGmialay 90
                          ++++  + a++l+ i+ ++  ++l lvG S+GG  a+++
     EHU02013.1 34 EmivpqlPTFPA-DAAAMLEDIVLSHSGRQLGLVGSSLGGYYATWL 78
                   156666678887.59*************************999876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.74
                    EEETTCSSSCHHHHHHH CS
  Abhydrolase_1 217 isgtsDplvppkaledl 233
                    ++ t D + ++++  d+
     EHU02013.1 142 LQQTGDEVLDYRQALDY 158
                    34456666666333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1453.31
//
Query:       EHU02014.1  [L=275]
Description: cyclic 3',5'-adenosine monophosphate phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-18   65.9   4.6    8.7e-18   65.6   4.6    1.1  1  Metallophos    Calcineurin-like phosphoesterase
    7.1e-07   29.6   6.5    1.3e-06   28.7   6.6    1.5  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   4.6   9.7e-22   8.7e-18       2     203 ..      16     206 ..      15     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 9.7e-22
                  EEEEEESBTB.......TTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHl.......algggqlddllkllddl.lreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHegfeeellnkygylgif 91 
                  ril+++D+Hl        lg+  +++++++ld + +++ + dl++ +GDl ++ ++e  ++ +++   ++p+p+++l+GNH+ f+  +    ++ gi+
   EHU02014.1  16 RILQVTDTHLfagkhesLLGVNTWASYDAVLDAIiAQQRDYDLIVATGDLSQDHSVEA-YQHFVEGISRLPKPCVWLPGNHD-FQPAMVDTLAEAGIN 111
                  8****************888888888889998885555799****99*******8888.8888888888888**********.999888888888888 PP

                  HHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCCHHHHHH.HHHHTTCSEEEEEESSESSCSSSCSCCHHHHH.. CS
  Metallophos  92 sepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepgdewlkd.lekrekadwvivlgHsplyrgsgylfgdeale.. 185
                  ++ +   +  ++++ ++ l s+   + + hG  s ++                     ewl+  l +  ++ ++++l+H+pl  +++ + ++++l+  
   EHU02014.1 112 AHKH---VLLGEHWQVVLLDSQ--VFGVPHGMlSDYQ--------------------LEWLNTtLARYPQRHTLVLLHHHPLA-SGCTWLDQHSLRnp 183
                  7777...555778888888888..6777777765555....................9*****9999****************.66666666666656 PP

                  ....HHHHHTT.ESEEEEESSSS CS
  Metallophos 186 ....dllkkyg.vdlvisGHtHv 203
                       +l+ y  ++  ++GH+H+
   EHU02014.1 184 hqldAVLQHYPlAKTLVCGHIHQ 206
                  6554665555558889******7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   6.6   1.5e-10   1.3e-06       2     130 ..      16     207 ..      15     240 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.5e-10
  Metallophos_2   2 klaiiSDlH...............snldaleavle..alkevgvdaiihaGDl.eeeepevleellela.....pvlaVrGNnD............ 62 
                    +++ ++D+H               +     +avl+  ++++ ++d+i+ +GDl ++ + e+ + + e       p +  +GN+D            
     EHU02014.1  16 RILQVTDTHlfagkhesllgvntwA---SYDAVLDaiIAQQRDYDLIVATGDLsQDHSVEAYQHFVEGIsrlpkPCVWLPGNHDfqpamvdtlaea 108
                    6788999999999998888885442...3334433112355667********9544444444444333366679999*******887777777766 PP

  Metallophos_2  63 ..............eev.veedvlreaaelgtdlp.eeaelel....agekvlliHgdpl............gvkdalaellkeaeegsdvvvcGH 126
                                  + v ++++v   ++++  d++ e  + +l    ++ ++ l+H++pl            + +++l+++l+  +  ++ +vcGH
     EHU02014.1 109 ginahkhvllgehwQVVlLDSQVFGVPHGMLSDYQlEWLNTTLarypQRHTLVLLHHHPLasgctwldqhslRNPHQLDAVLQH-YPLAKTLVCGH 203
                    6666666666554333345555555555555555444444444666566669******99********9988777778777777.66677****** PP

  Metallophos_2 127 tHvp 130
                    +H++
     EHU02014.1 204 IHQE 207
                    **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1994.82
//
Query:       EHU02015.1  [L=141]
Description: putative dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-40  138.1   0.4    1.5e-40  137.8   0.4    1.1  1  DUF1249   Protein of unknown function (DUF1249)
  ------ inclusion threshold ------
      0.069   12.8   0.0       0.12   12.1   0.0    1.4  1  LuxS      S-Ribosylhomocysteinase (LuxS)


Domain annotation for each model (and alignments):
>> DUF1249  Protein of unknown function (DUF1249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.4   1.7e-44   1.5e-40       1     115 [.      22     135 ..      22     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 1.7e-44
     DUF1249   1 rLlrLlpelealeeerefsveqlldlslevlesarYTttveleqeseelellkkpkltvRlYhDArmaEvlsaqqhrrlkarydypnkkmhqldeKlql 99 
                 +L+rLlp  +a++++  ++v++ ++++++v+es+rYTt+v ++q+  +++  + p+++vRlYhDA +aEv+s+qq+ r+karydypnkkm q+deK+q+
  EHU02015.1  22 QLRRLLPRDDAAGASVIYQVSG-ARYQVTVEESTRYTTLVDIRQTAPAVSYWSLPSMSVRLYHDAMVAEVCSTQQIYRFKARYDYPNKKMNQRDEKHQI 119
                 599******************9.**************************************************************************** PP

     DUF1249 100 NrFLaeWLefclkqgh 115
                 N+FLa+WL++cl++g 
  EHU02015.1 120 NQFLADWLRYCLTHGA 135
                 **************95 PP

>> LuxS  S-Ribosylhomocysteinase (LuxS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05      0.12      22      65 ..      87     130 ..      68     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
                 EEEETTSEEEEEEEEE-S-TTTB---HHHHHHHHHHHHHHHHHH CS
        LuxS  22 kdkvekgdvittfDlRlkkPneevletaalHtlEHllAtflRnh 65 
                 + +v + ++i  f  R   Pn+++ + ++ H +  +lA++lR  
  EHU02015.1  87 VAEVCSTQQIYRFKARYDYPNKKMNQRDEKHQINQFLADWLRYC 130
                 456667899********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1199.23
//
Query:       EHU02016.1  [L=211]
Description: ADP-ribose pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-09   36.8   0.2    5.3e-09   36.2   0.2    1.4  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.2   2.9e-13   5.3e-09       5     115 ..      59     176 ..      55     198 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.9e-13
                 EEEEEEEETTSE.EEEEEES......SSSTTTE..ESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC CS
       NUDIX   5 avgvvllnekge.vLlvrrs......kkpfpgW..elPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfleeve 93 
                 a+ ++ +++ +  v+l+++       ++p+p W  e+++G +epgEtpe+ +rRE+ EE+ l + +   +l+   yla++ g    + e l v+++ev+
  EHU02016.1  59 AAVLLPYDPVRDeVVLIEQIripafdCSPTP-WllEMVAGIIEPGETPEQVVRREAVEEADLMVgRVKPVLN---YLASPGG----TSERLSVMVGEVD 149
                 4444477777555*****9965654433333.5558*************************94423333333...4444444....4445555554444 PP

                 SGCSST.....STTTEEEEEEEEHHHH CS
       NUDIX  94 gelepn.....denevsevrwvpleel 115
                   ++ +     +ene   v  v+ e++
  EHU02016.1 150 ASQAKGchgleEENEDILVHVVSREQA 176
                 444444455333333333355666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1507.00
//
Query:       EHU02017.1  [L=490]
Description: transport channel [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-61  206.2  36.2    3.7e-34  118.2  15.6    2.1  2  OEP             Outer membrane efflux protein
     0.0059   16.2   1.6      0.011   15.3   1.6    1.4  1  BB_PF           Beta barrel Pore-forming domain
  ------ inclusion threshold ------
      0.022   14.2   0.1      0.062   12.8   0.1    1.8  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
       0.93    9.6   8.9         25    5.1   0.4    3.8  3  DUF148          Domain of unknown function DUF148


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4  12.5   1.7e-30   7.5e-27       1     188 []      25     209 ..      25     209 .. 0.98
   2 !  118.2  15.6   8.3e-38   3.7e-34       2     188 .]     232     425 ..     231     425 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 1.7e-30
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 l +++++a   npdl+++ a+ +aa + +++a++  lP+l+l++ y y ++  +++g  ++t++   +l+l+q++fd  +  +++  ++    ++  ++
  EHU02017.1  25 LLQVYQQARLSNPDLRSSAATRDAAFEKINEARSPLLPQLGLGADYTYANGYRDSSGIHSNTTS--GSLQLTQTIFD-MSKWRALTLQEKAAGIQDVTY 120
                 57899*****************************************************999998..***********.99999999999999******* PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 + a+q+l+l++a+ay+++l+a  +l   e++  +  + l+++ +r+++Gl+ ++dv++a++++++++a++++a+++l +a   L++++g
  EHU02017.1 121 QVAQQDLILNTATAYFNVLKAIDTLSYVEAQKMSIYRELDQTTQRFNVGLVAITDVQNARAQYDSVLANEVTARNDLDNAVESLRQITG 209
                 **************************************************************************************998 PP

  == domain 2  score: 118.2 bits;  conditional E-value: 8.3e-38
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt.......svgltlsqplfdggkrrarvkaakaqle 93 
                 + ll++a ++n+ l++a+++ + a+++++ a a  lPtl+l++s g +++++ g+    + ++t        vgl++++pl++gg+  ++vk+a+++  
  EHU02017.1 232 NSLLKQAESRNLNLLSARLNQDLAREQIRSAEAGHLPTLDLTASTGLSNSKYGGSRAEQNASSTdsitgnnKVGLSFTLPLYSGGSVTSQVKQAQYNFV 330
                 5689***************************************************999999999*********************************** PP

         OEP  94 aaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  a +qle+a ++  + v+++y+++ ++  +++++++a+ +a++ l+++ea y++G+ +++dvl+a + l++a+++l  a++++ +++++++y+lg
  EHU02017.1 331 SASEQLEAAHRSAVQTVRSSYNNVNASASSIAAYKQAVVSAQSSLDAMEAGYQVGTRTIVDVLNATSTLYNAKQQLSDARYSYLINQLNISYALG 425
                 *********************************************************************************************98 PP

>> BB_PF  Beta barrel Pore-forming domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.6   2.5e-06     0.011      66     147 ..     348     431 ..     337     457 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.5e-06
       BB_PF  66 thtvtkkkGfskkftaskevkasvgkgikacesslevttkfnyteeigsetetektieL..gagtyyiYQtvivYafrltdase 147
                 + + + ++ + ++  a+k++  s +++++a+e+  +v+t++  +  + ++t  + +++L  +  +y i Q  i Ya+ ++++++
  EHU02017.1 348 RSSYNNVNASASSIAAYKQAVVSAQSSLDAMEAGYQVGTRTIVDVLNATSTLYNAKQQLsdARYSYLINQLNISYALGTLNEQS 431
                 5566677788999999*******************************99**********86667899*********98888776 PP

>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.4e-05     0.062      32      70 ..     112     150 ..     110     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                     HHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GG CS
  Ribosomal_S5_C  32 laGikDvlakslgsrnpinvvkAtfeALkklrspeevaa 70 
                     +aGi+Dv  ++      +n++ A f+ Lk++ + + v a
      EHU02017.1 112 AAGIQDVTYQVAQQDLILNTATAYFNVLKAIDTLSYVEA 150
                     8******************************99988766 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5     0.012        53      41      81 ..     124     164 ..      94     168 .. 0.82
   2 ?    3.7   0.1     0.014        64      58      92 ..     172     206 ..     170     217 .. 0.89
   3 ?    5.1   0.4    0.0055        25      33      95 ..     318     383 ..     312     396 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
      DUF148  41 eakvkaqkeevkknvtavisnLssvqekleaIldnkslTrk 81 
                 ++++  +++ +  nv ++i +Ls v+++  +I+ + ++T +
  EHU02017.1 124 QQDLILNTATAYFNVLKAIDTLSYVEAQKMSIYRELDQTTQ 164
                 5556666667777999***********************87 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.014
      DUF148  58 visnLssvqekleaIldnkslTrkeqkeaieelkk 92 
                 +i   +++ ++++++l+n+   r++  +a+e+l++
  EHU02017.1 172 AITDVQNARAQYDSVLANEVTARNDLDNAVESLRQ 206
                 6888999*************************998 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0055
      DUF148  33 vtdeykefeakvkaqkeevkknvtavisnLs....svqekleaIldnkslTrkeqkeaieelkkqyp 95 
                 vt+++k+ + +   + e++++++ +++++      +v+++ ++I +  ++ +   ++ +++++  y+
  EHU02017.1 318 VTSQVKQAQYNFVSASEQLEAAHRSAVQTVRssynNVNASASSIAAY-KQAVVSAQSSLDAMEAGYQ 383
                 56666666666555555555555555555553333777777777643.3444444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3552.69
//
Query:       EHU02018.1  [L=224]
Description: conserved outer membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-57  192.9  12.8    5.9e-57  192.6  12.8    1.1  1  DUF1190   Protein of unknown function (DUF1190)
    0.00023   20.9   5.7    0.00028   20.6   5.7    1.1  1  SARAF     SOCE-associated regulatory factor of calcium homoeo


Domain annotation for each model (and alignments):
>> DUF1190  Protein of unknown function (DUF1190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6  12.8   6.5e-61   5.9e-57       1     160 [.      41     207 ..      41     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 6.5e-61
     DUF1190   1 eeeakvyssvdeCvaanevsaeqCqaayaeAqkeaektaPrYasredCeaefgagqCtq..........aqqssgggsffmPlmaGfmlgrllsggggy 89 
                 +e++ +y+++d+C++an+ +++qC++a+++A+keae+taP+Ya+redC aefg++qC+q          +++++++gsf+mPlmaG+m+gr+++gg g+
  EHU02018.1  41 DETVTLYQNADDCSKANPGQSAQCTTAFNNAKKEAERTAPKYATREDCVAEFGENQCQQapaqagtgstNAEAQQSGSFWMPLMAGYMMGRMMGGGAGF 139
                 5899****************************************************************966666677****************8888** PP

     DUF1190  90 rsqPlyrsrsrestlsgkeafvsasgknygaassekrtvnvaktalkpkptvtstvsrgGFGssssarssl 160
                 ++qPl++ ++++s+++g+  fv+asg+nyg+a++ ++t+nv+ktal+pkpt+tst++rgGFG+++++++++
  EHU02018.1 140 AQQPLFSPKTPNSPANGQ--FVDASGRNYGNATP-GKTMNVPKTALAPKPTTTSTITRGGFGETVAKQNAM 207
                 ******************..*********99987.8999****************************9987 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   5.7   3.2e-08   0.00028     167     328 ..      24     200 ..       3     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.2e-08
       SARAF 167 lvllviayivykaflaaeee.reaeaeggrrgegggggggggg...pgseeeqddpPppy...........sltksqkpsssses.sqqgeqeeswrpG 249
                 + ++v a+ + + + +++e+ +   ++    ++ ++g++++ +   ++ ++e +   p y           +   +q++++  ++ + + ++e+++ + 
  EHU02018.1  24 VAIAVSAVFMLAGCEQNDETvT-LYQNADDCSKANPGQSAQCTtafNNAKKEAERTAPKYatredcvaefgE---NQCQQAPAQAgTGSTNAEAQQSGS 118
                 4455666666666776666642.33333333333333333333344334444466667777******96542...44433333333444555666668* PP

       SARAF 250 FWtGlatGaaaGYlagrrraqneeteeeekek...sssWgsssegsssssssssssssassssssssssssstrestGFGgT 328
                 FW  l++G + G ++g  +   ++   + k+    +++   +++g +  ++++ ++ +  +++ +++++++st ++ GFG+T
  EHU02018.1 119 FWMPLMAGYMMGRMMGGGAGFAQQPLFSPKTPnspANGQFVDASGRNYGNATPGKTMNVPKTALAPKPTTTSTITRGGFGET 200
                 **************998887655555433333344333333447788888888888888889999999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1589.16
//
Query:       EHU02019.1  [L=386]
Description: putative enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-162  538.4   0.0   1.1e-161  538.2   0.0    1.0  1  GSP_synth  Glutathionylspermidine synthase preATP-grasp
  ------ inclusion threshold ------
       0.17   11.0   0.0       0.27   10.3   0.0    1.4  1  TTL        Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  538.2   0.0  1.2e-165  1.1e-161       1     378 []      12     384 ..      12     384 .. 0.99

  Alignments for each domain:
  == domain 1  score: 538.2 bits;  conditional E-value: 1.2e-165
   GSP_synth   1 weekleeegftfhtedgepYwdesaayaftlaeveeleeateelhqmcleaaeevveeeellarlgipeellelireSwerrepsLygRfDlaydGkgp 99 
                 w+ek++e gf fht++gepYw e+a+y+ftla+++ lee+t+elhqmcl+++e+vv++e+ll+r++ip+++++++r+Sw++r+psLy+R+Dla+dG+g 
  EHU02019.1  12 WREKATEFGFRFHTMHGEPYWCEDAYYQFTLAQIDYLEEVTAELHQMCLQVVEKVVNSEALLTRFRIPKHTWDFVRDSWNQRQPSLYSRLDLAWDGRGD 110
                 99************************************************************************************************* PP

   GSP_synth 100 akllEyNaDTPTsLlEaavvqwlwledqreagelkeeadqfnslhealverfkeltleeekeklhfsavedseEDratvayLqdtakeagleteflpie 198
                 akllE+NaDTPTsL+Eaa++qwlwledq +ag+l++ +dqfnsl+e+l++rf+ l++++  + lhf++++d+eEDr+tv+yLqd+a+eagl  efl+i+
  EHU02019.1 111 AKLLENNADTPTSLYEAAFFQWLWLEDQLNAGQLPPGSDQFNSLQEKLIDRFTVLHQQHGFNWLHFACCRDTEEDRGTVQYLQDCATEAGLPSEFLYID 209
                 ******************************************************8777999************************************** PP

   GSP_synth 199 digldeeegrfvdadgrkiellfkLyPwEwlvedefgeelaeallevrllePawklllsnKalLallWelypghpnLLpayfeedeeeekgkkyvkKpl 297
                 +igl e +g+f+d ++++i++lfkLyPwE+++++ f+++la+a   vr+lePawk +lsnKalL++lW+++p+hpnLLpa+f+ed+    ++kyv Kpl
  EHU02019.1 210 EIGLGE-KGQFTDPHDQVISNLFKLYPWEFMLREMFSTKLADAG--VRWLEPAWKSILSNKALLPMLWQMFPNHPNLLPAWFAEDD-VPPMDKYVVKPL 304
                 *****8.*************************************..************************************8888.569********* PP

   GSP_synth 298 fgREGanveiveegsevaeekegeygeekviyQeyaelpkfdgsypvlgswlvgdeaaGlgiRedrglitdnlsrFvPhli 378
                 f+REGan++ive+g+e a+  +g+ygee++i+Q++++lpkf++sy+++gswl++d++aG+g+Redr+lit++lsrF+Ph +
  EHU02019.1 305 FSREGANIRIVENGKEIARV-DGPYGEEGMIVQQFHPLPKFGDSYTLIGSWLIDDQPAGIGLREDRELITQDLSRFYPHAF 384
                 *****************999.**********************************************************75 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.1e-05      0.27      66     108 ..     282     338 ..     225     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.1e-05
                 -..............B----SS---XX------BSSTHHHHHHHH..SSS-EEEEB- CS
         TTL  66 s..............ntwIvKpsasarGkgirvfnkledikkivsqsqkeplvvqkY 108
                                 +++vKp  s+ G++ir++++ ++i +++    +e ++vq++
  EHU02019.1 282 NllpawfaeddvppmDKYVVKPLFSREGANIRIVENGKEIARVDGPYGEEGMIVQQF 338
                 233334444446677999*************************99999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2840.27
//
Query:       EHU02020.1  [L=260]
Description: putative dioxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-29  101.7   0.0    4.2e-29  101.5   0.0    1.1  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   2.3e-33   4.2e-29       2     272 ..       8     259 ..       7     260 .] 0.83

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.3e-33
        LigB   2 alllsHvppilaavdgkeqealrekvikgyesireriaek..sPdtiivvsphhltdvnpvfvlgvaeefeaiddfg...kflprleyelkgnpeLaek 95 
                 al+l H++p+ a ++  ++           +++r++  e   +P++i+ vs+h++t+     ++++ ++  +i+dfg   ++l++  y ++g+p Lae+
  EHU02020.1   8 ALFLGHGSPMNALEE--NR---------YTAAWRKAG-ETlpRPRAILAVSAHWYTQGT---AVTAMDNPRTIHDFGgfpQALFDTRYSAPGSPALAEE 91 
                 566777777755444..11.........222344444.44489*************665...468888899********99****************** PP

        LigB  96 iaealkksgidlavesnsmklDHGtlvPLelmlpdeakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGglsHqlegdeaakada 194
                 iae+l    +     ++  +lDHG +  L  m+p +a +pv+++s+ +    ++ ++ ++ +G+ l  ++   d++v+i++sG++ H+l++   ++ +a
  EHU02020.1  92 IAEQLSPVPVH--L-DHAWGLDHGSWGVLIKMYP-DADIPVVQLSIDS----GKPAAWHFGMGRKLSALR---DRGVMIVASGNVVHNLRKVLWGGGEA 179
                 ****9877666..5.99*****************.8************....99****************...********************999999 PP

        LigB 195 qtlllneefdeelldllke....grveelckmskeelsaaaghe.eeelvplvvalGalsgd.kaelrkelvsyeglpavsavf 272
                     +++ f +++ d+l      + +  +  m+  +++aa  ++  e++ pl+  lG    d ++ ++ e++ + ++++ s+ +
  EHU02020.1 180 --YSWATGFNNFVRDNLAVqaeaDSHPLVSFMQ--HPDAALSNPtPEHFLPLLYVLGSRHADePVTVPVEGMEMGAISMLSVQV 259
                 ..77*************8766656666455555..666666678899******9999988777899999999999998888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1804.77
//
Query:       EHU02021.1  [L=218]
Description: 3,4-dihydroxy-2-butanone-4-phosphate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-82  274.8   1.8    3.4e-82  274.6   1.8    1.0  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.6   1.8   1.9e-86   3.4e-82       1     192 []      17     208 ..      17     208 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.6 bits;  conditional E-value: 1.9e-86
                    HHHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSSS-SSTT---BB--EEESST-SSS-SHH CS
  DHBP_synthase   1 eeaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmveenedkhktaftvsvdaaegttTGIsaa 96 
                    e+ai+al++G+ v+v+Dde+renegd+i+aAe++t e++a++irh+sG++c++lteer ++L Lp+mve+n++ ++t ftv+++aa+g+tTG+sa+
     EHU02021.1  17 ERAIAALREGRGVMVLDDENRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRQQLALPMMVENNTSAYGTGFTVTIEAAKGVTTGVSAQ 112
                    689********************************************************************************************* PP

                    HHHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TTSCB-BHHHHHHHHHHHT-EEEEHHHHHHH CS
  DHBP_synthase  97 DRalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellnddgtmarrdeleefakkhglkiitiedliey 192
                    DR +Tir++++++akped++rPGhvfplra++ggvl+R ghTEa++dL++lag+kpa+v+cel+nddg+ma+ +e+++fak+h ++++tiedl++y
     EHU02021.1 113 DRITTIRAAIADDAKPEDLNRPGHVFPLRAHDGGVLTRGGHTEATIDLVTLAGFKPAGVLCELTNDDGSMAHAPEVIAFAKQHAMPVVTIEDLVAY 208
                    **********************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1540.29
//
Query:       EHU02022.1  [L=112]
Description: hypothetical protein CKS_0517 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-29  101.0   6.6    4.5e-29  100.8   6.6    1.1  1  BMFP      Membrane fusogenic activity
  ------ inclusion threshold ------
      0.039   14.0   2.1       0.38   10.7   2.1    2.0  1  Phasin    Poly(hydroxyalcanoate) granule associated protein (
      0.054   13.4   0.1       0.12   12.3   0.0    1.7  2  ApoC-I    Apolipoprotein C-I (ApoC-1)
        0.1   12.5   0.0       0.14   12.0   0.0    1.2  1  DUF3052   Protein of unknown function (DUF3052)


Domain annotation for each model (and alignments):
>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   6.6     1e-32   4.5e-29       1      76 [.       1      77 [.       1      78 [. 0.98

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 1e-32
        BMFP  1 mskprilddlakkvgdalpaaag.vreeieknvravlqealsklDLVtREEFdvqrevlartrekleaLearvaaLE 76
                m+++++++++a++v+dalp++++ +++++ek++r+ lq++l+++DLV+REEFdvq++vl+rtrekl+aLe+r+a+LE
  EHU02022.1  1 MIDTKKIEQIARQVHDALPKGVReFGDDVEKKIRQTLQAQLTRMDLVNREEFDVQTQVLLRTREKLAALEQRLAQLE 77
                7899************************************************************************9 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.1   8.6e-05      0.38      63     110 ..       8      55 ..       2      84 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.6e-05
      Phasin  63 resvkskveevkekaeeqwdklekafdervakaLsrlgvpsredveaL 110
                 ++ +++  + + + + e  d +ek + +++++ L+r+++ +re+ +  
  EHU02022.1   8 EQIARQVHDALPKGVREFGDDVEKKIRQTLQAQLTRMDLVNREEFDVQ 55 
                 3333333455566677888999999*************9999987643 PP

>> ApoC-I  Apolipoprotein C-I (ApoC-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05      0.12       9      31 ..      16      38 ..       7      48 .. 0.87
   2 ?   -2.5   0.0       1.1   5.1e+03       4      13 ..      69      78 ..      63      79 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
                ....HHHCHHHHHHHHHHCCHCC CS
      ApoC-I  9 eslpdklkEfgktledKaraaie 31
                + lp+ ++Efg+++e K r++++
  EHU02022.1 16 DALPKGVREFGDDVEKKIRQTLQ 38
                5689***************9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                TTSSC....H CS
      ApoC-I  4 lesafeslpd 13
                le+++++l+ 
  EHU02022.1 69 LEQRLAQLES 78
                6777777765 PP

>> DUF3052  Protein of unknown function (DUF3052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.2e-05      0.14      17      62 ..      25      71 ..      20      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
     DUF3052 17 wDdDvdedlreaied.ligeelvdedadevvDvvllWwrddDgdLvd 62
                + dDv++++r++++  l+  +lv+ +  +v   vll  r+    L  
  EHU02022.1 25 FGDDVEKKIRQTLQAqLTRMDLVNREEFDVQTQVLLRTREKLAALEQ 71
                679**********8615778****************99986555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 855.10
//
Query:       EHU02023.1  [L=474]
Description: heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-54  185.0   0.9    3.4e-54  184.2   0.3    1.6  2  PfkB             pfkB family carbohydrate kinase
    3.2e-15   56.6   0.0    5.8e-15   55.7   0.0    1.5  1  CTP_transf_like  Cytidylyltransferase-like
    1.6e-07   31.0   0.0    5.1e-07   29.3   0.0    1.8  2  Phos_pyr_kin     Phosphomethylpyrimidine kinase
    1.9e-06   27.5   1.2    1.1e-05   25.0   1.2    2.0  1  Carb_kinase      Carbohydrate kinase
     0.0082   15.3   0.0      0.014   14.5   0.0    1.3  1  Propeptide_C25   Propeptide_C25
  ------ inclusion threshold ------
      0.031   13.5   0.2       0.18   11.0   0.1    1.9  2  Pantoate_ligase  Pantoate-beta-alanine ligase
      0.049   13.5   0.0       0.16   11.8   0.0    1.9  2  FAD_syn          FAD synthetase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.3   1.3e-57   3.4e-54       2     297 ..      11     302 ..      10     307 .. 0.90
   2 ?   -2.0   0.0      0.69   1.8e+03     205     229 ..     328     348 ..     320     371 .. 0.60

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 1.3e-57
                 EEEEEEEEEE..EEEEEECSSH...TTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEE CS
        PfkB   2 tkvvviGeal..idliavsekl...egelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglal 94 
                 ++v+v+G+++  +++++ ++++   ++ +v +v+tve ++GGa+ NvA+++a lga +++ig  G D++++ l ++lk+  vd+++v   + ++t ++l
  EHU02023.1  11 ASVLVVGDVMldRYWYGPTSRIspeAPVPVvKVETVEERPGGAA-NVAMNIAALGAGSRLIGLTGEDDAAQVLSKTLKDVRVDCNFVT-LKSHPTITKL 107
                 6899******888999999999***777777*************.*******************************************.6666****** PP

                 EEETTTSEEEEEEEEGG.GGGHHHHHHH.HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEH CS
        PfkB  95 ivvdedgertivfnrga.aadltkeele.ededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpne 191
                  v++++ ++ i  + ++  ++ + +++  + ++ l+++  +++s         +++++++++a+++   +p+l dp+g     ++ ++  +a+ll+pn 
  EHU02023.1 108 RVLSRN-QQLIRLDFEEgFEQVDAAPMHeKMRQSLASSGTVVLSD--YGKGALDSVQQMITLAREAS--VPVLIDPKG----TDFARYR-GATLLTPNL 196
                 ****99.45555554440444555555578889999999999998..66678999************..*********....5788866.********* PP

                 HHHHHHHTSCTHSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH CS
        PfkB 192 eElealtgekledieealaalhklkakga.ktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAal 288
                 +E+ea++g++  +++e+++++ kl+a +  + ++vt++++G+ + + +++ l+ p+ ++++v D+tGAGD+++g ++aal++g sleea+ +ana+A +
  EHU02023.1 197 SEFEAVVGKC-RTEQEIVERGMKLIADCDlSALLVTRSENGMSLLQpGKAPLHLPT-QAQEVFDVTGAGDTVIGVLAAALAAGDSLEEACFLANAAAGV 293
                 **********.7**********************************9999999999.99**************************************** PP

                 HHTSSSSST CS
        PfkB 289 vvqkkgaia 297
                 vv k g+++
  EHU02023.1 294 VVGKLGTST 302
                 ******997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.69
                 HHHHHHHHHHHHHTTSSEEEEEEGG CS
        PfkB 205 ieealaalhklkakgaktvvvtlGk 229
                  +ea+a++ +    + ++vv+t G+
  EHU02023.1 328 LKEAVAMARQ----RGEKVVMTNGV 348
                 3333333333....44566666664 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.3e-18   5.8e-15       2     142 ..     345     469 ..     344     470 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.3e-18
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      ++G+FD++H GH  +l +a+kl++  liv+v+sd ++k+ k   +p+ + e+R+  l +++ vd v+ +++++++r ++ ++ pd   lv g+d
       EHU02023.1 345 TNGVFDILHAGHVSYLANARKLGDR-LIVAVNSDASTKRLKgdsRPVNPQENRMIVLGALEAVDWVVLFEEDTPQR-LIASILPD--LLVKGGD 434
                      78***********************.**************669********************************8.999*****..******7 PP

                      HHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  93 vledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                               + e+i g+++++    +       +   + + giS+t i++
       EHU02023.1 435 Y--------KPEDIAGSKEVWANGGD-------VRVLNFEDGISTTNIIK 469
                      4........77788887777777666.......77777888888888875 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     2e-10   5.1e-07     119     224 ..     188     287 ..     174     292 .. 0.86
   2 ?   -2.9   0.0       1.4   3.6e+03     150     184 ..     419     454 ..     414     460 .. 0.64

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2e-10
                   G-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCT CS
  Phos_pyr_kin 119 latvitPNlpEaeaLlgekikteedmkeaakkllk.lgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaelakg 214
                    at++tPNl E ea +g k++te+++ e + kl++    +a l++ ++    +   + +l  g+   +l+++  e  +  G+G+t+  ++aa la g
    EHU02023.1 188 GATLLTPNLSEFEAVVG-KCRTEQEIVERGMKLIAdCDLSALLVTRSE----NG--MSLLQPGKAPLHLPTQAQEVFDVTGAGDTVIGVLAAALAAG 277
                   599**************.899999998888888885777777776655....23..36899************************************ PP

                   SSHHHHHHHH CS
  Phos_pyr_kin 215 esleeAvkkA 224
                   +sleeA   A
    EHU02023.1 278 DSLEEACFLA 287
                   ******8666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                   HHHHTT-SEEEEEEGGS.-SSSEEEEEEEETSSEEE CS
  Phos_pyr_kin 150 kllklgakaVlikGghl.egeeavvtdvlydgeeve 184
                   +l++      l+kGg+  +++ a +++v+ +g++v+
    EHU02023.1 419 RLIASILPDLLVKGGDYkPEDIAGSKEVWANGGDVR 454
                   566666778899***973334444556666666655 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   1.2   4.4e-09   1.1e-05      57     215 ..     135     292 ..      47     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.4e-09
                  TTS...--SSS-SEEEE-TT-SSSHCHHHHCHHHCCCCS-EEEEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHH CS
  Carb_kinase  57 eqakileklerldavviGpGLgrdekikklleevlekdeplviDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaqkl 154
                  e++   ++++   +v+   G g+ +++++++  ++e+ +p++iD  g  +  +       ++++ LTP+  Ef+  ++     e++ +e + +l++ +
   EHU02023.1 135 EKM-RQSLASSGTVVLSDYGKGALDSVQQMITLAREASVPVLIDPKGTDFARY-------RGATLLTPNLSEFEAVVGKCR-TEQEIVERGMKLIADC 223
                  333.334455555666667889999999****************999877777.......69*****************99.9999999999999999 PP

                  TTEEEEESTTS...EEEECTTEEEEE--.--GGG-STTHHHHHHHHHHHHHHCTS....SHHHHHHHHH CS
  Carb_kinase 155 navvllkgekd...vivspegevlinst.gssalakGGsGDvLaGligalLaqne....asyeaaiaaa 215
                      ll   ++    + +p+++ l+++t  +    + G GD+  G+++a La       a + a +aa 
   EHU02023.1 224 DLSALLVTRSEngmSLLQPGKAPLHLPTqAQEVFDVTGAGDTVIGVLAAALAAGDsleeACFLANAAAG 292
                  87777654443122688886666666551677889*****************99844434444444444 PP

>> Propeptide_C25  Propeptide_C25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.5e-06     0.014      11      79 ..     107     174 ..      95     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.5e-06
                     -EEE.EEETTEEEEEEE--S-EEEEEEETTEEEEEEE-TT-B----TTSB---BEEEEEE--SSEEEEE CS
  Propeptide_C25  11 valLeSqeqsvtkiefrvanlkftsvekdkgvfqrisitegeslsekGepelPilsksiavpetreakv 79 
                      ++L S +q +++++f+  + ++    +++++ q  +  + + ls+ G+  l   +++i+++ + ++ v
      EHU02023.1 107 LRVL-SRNQQLIRLDFEEGFEQVDAAPMHEKMRQSLASSGTVVLSDYGKGALDSVQQMITLAREASVPV 174
                     4566.899****************************************************986655444 PP

>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.18   4.7e+02     144     186 ..      76     116 ..      57     157 .. 0.55
   2 ?   11.0   0.1     7e-05      0.18       5      54 ..     324     374 ..     322     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.18
                      GGHHHHHHHHHHHHHTT-SSEEEEEEEEBETTSEBTTGGGGGS CS
  Pantoate_ligase 144 KDaqqlavirrlvkdlnlpveivavpivReedgLAlSSRNkyL 186
                       Da q  v+ +  kd+ ++++ v+++       L + SRN++L
       EHU02023.1  76 DDAAQ--VLSKTLKDVRVDCNFVTLKSHPTITKLRVLSRNQQL 116
                      33332..334444444444444444444444444444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7e-05
                      SHHHHHHHHHHHHHTT-EEEEEEE-S...S-GHHHHHHHHHHHHHSSEEEEEE CS
  Pantoate_ligase   5 tvaelrellkelrkegkkvglVpTmG...aLHeGHlsLvkaakeendvvvvSi 54 
                      t ael+e+++ +r++g+kv  V T G    LH+GH+s + +a++  d+++v++
       EHU02023.1 324 TEAELKEAVAMARQRGEKV--VMTNGvfdILHAGHVSYLANARKLGDRLIVAV 374
                      6789999999998887764..5566622369****************999986 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   3.7e+03      79     134 ..     115     167 ..     103     177 .. 0.66
   2 ?   11.8   0.0   6.3e-05      0.16       5      34 ..     339     368 ..     335     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
     FAD_syn  79 avlvvdFtkefaelsaeeFiekllveklkvkavvvGfdfrfGkkregdvellkelg 134
                 +++ +dF++ f +++a    ek ++++l  +  vv  d+  Gk+  ++v+++ +l+
  EHU02023.1 115 QLIRLDFEEGFEQVDAAPMHEK-MRQSLASSGTVVLSDY--GKGALDSVQQMITLA 167
                 5667788888888887776666.5557777777776665..555555555555555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.3e-05
     FAD_syn   5 degavvtlGnFDGvHlGHqallkkaveaak 34 
                  e+ v+t G FD +H GH + l++a+++ +
  EHU02023.1 339 GEKVVMTNGVFDILHAGHVSYLANARKLGD 368
                 5789********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3434.03
//
Query:       EHU02024.1  [L=950]
Description: glutamine synthetase adenylyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-193  637.9   2.9    1.3e-98  329.4   0.3    2.6  2  GlnE           Glutamate-ammonia ligase adenylyltransferase
    1.4e-57  193.9   8.2    7.2e-46  155.9   1.2    3.3  3  GlnD_UR_UTase  GlnD PII-uridylyltransferase
  ------ inclusion threshold ------
       0.12   12.7   0.1       0.33   11.3   0.1    1.7  1  DUF2924        Protein of unknown function (DUF2924)
       0.31   11.0   2.3         15    5.4   0.0    4.0  4  AbiEii         Nucleotidyl transferase AbiEii toxin, Type IV 


Domain annotation for each model (and alignments):
>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.1   0.1   9.2e-96   4.1e-92       8     248 ..      35     273 ..      30     276 .. 0.98
   2 !  329.4   0.3    3e-102   1.3e-98       2     250 ..     552     804 ..     551     805 .. 0.97

  Alignments for each domain:
  == domain 1  score: 308.1 bits;  conditional E-value: 9.2e-96
                 HHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TCHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH CS
        GlnE   8 laaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavedeeqliealRqfkreellriavadllglltveevsraLseLaeavieaald 106
                 la+S+fv + l+++p++ ++++d+   ++ +e+ ++a++l+  +aa  +e++l+++lR f+r+ l+ria+ + l  +++e+++++Ls Lae +i aa+d
  EHU02024.1  35 LAFSDFVLDNLQQNPDWWQAIADR--SPQHEEWRHYAQWLSGDMAAADSEASLMRVLRLFRRRMLVRIAWMQCLHHASTEQTLQQLSVLAEVLISAARD 131
                 699*********************..************************************************************************* PP

                 HHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S--EE-TTSTTGG CS
        GlnE 107 lllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaeteggkksidaakfftrlaqrlisiLsartadGvlYevDlrLRPsGe 205
                 ++++++++e+gtp+++ gepq ll+lGmGklGg ELn+sSDiDlif++++++ t+gg++++d+a+fftr++qrli++L+++tadG++Y+vD+rLRP+G+
  EHU02024.1 132 WVYQDCCREFGTPCNAAGEPQPLLILGMGKLGGGELNFSSDIDLIFVWPDNGSTRGGRRELDNAQFFTRMGQRLIKVLDQPTADGFVYRVDMRLRPFGD 230
                 *************************************************************************************************** PP

                 GS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHH CS
        GlnE 206 sGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaaf 248
                 sGplv+s+aA+e+Yy+e++r+WEr+A+++Ar++++d++   + 
  EHU02024.1 231 SGPLVMSFAALEDYYQEQGRDWERYAMVKARLMGDDQDRWSQE 273
                 **********************************999866655 PP

  == domain 2  score: 329.4 bits;  conditional E-value: 3e-102
                 HHHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TC..HHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
        GlnE   2 kqlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavede..eqliealRqfkreellriavadllglltveevsraLseLae 98 
                 ++l++++aaSp+va++la++p lldelld+++l++p++++a++ el+++l++++ +  eq++ealRqfk++++lria+ad++g+l+v++vs++L++Lae
  EHU02024.1 552 RHLIRLCAASPMVASQLAHYPLLLDELLDPATLYQPTATDAYRDELRQYLMRIPADdeEQQLEALRQFKQAQMLRIAAADIAGTLPVMKVSDHLTWLAE 650
                 689**************************************************98888***************************************** PP

                 HHHHHHHHHHHHHHHHHCTSCCCCT.TCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-B.SSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S-- CS
        GlnE  99 avieaaldlllrqvvaelgtpvdek.gepqqllvlGmGklGgaELnysSDiDliflydedaete.ggkksidaakfftrlaqrlisiLsartadGvlYe 195
                 a+ie +++++++ +v+++g+p +   ++ +++ vlG+GklGg+EL+ysSD+Dl+fl+d++ ++  +g++sid+++f++rlaqr+++++s+rt++G+lYe
  EHU02024.1 651 AIIESVVQQAWNMMVQRYGRPSHLGqEHERGFTVLGYGKLGGWELGYSSDLDLVFLHDCPLDAVtQGERSIDGRQFYLRLAQRIMHLFSTRTSSGILYE 749
                 ************************955555*****************************999888********************************** PP

                 EE-TTSTTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHHHH CS
        GlnE 196 vDlrLRPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaafle 250
                 vD+rLRPsG++G+lv++++Af++Y+++ea+tWE+qAl+rArvv+g+++l ++f++
  EHU02024.1 750 VDARLRPSGAAGMLVSTFDAFDDYQRNEAWTWEHQALVRARVVFGEPALSERFNA 804
                 *************************************************999975 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.33   1.5e+03      37      62 ..      99     124 ..      95     142 .. 0.75
   2 !  155.9   1.2   1.6e-49   7.2e-46       1     146 []     296     435 ..     296     435 .. 0.99
   3 !   40.6   0.2   5.8e-14   2.6e-10       1      96 [.     824     916 ..     824     921 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.33
  GlnD_UR_UTase  37 fivqvlqlirGgrdpelrerstleal 62 
                     i+++  l++  +++ l++ s l+++
     EHU02024.1  99 RIAWMQCLHHASTEQTLQQLSVLAEV 124
                    5899******9999999998877665 PP

  == domain 2  score: 155.9 bits;  conditional E-value: 1.6e-49
  GlnD_UR_UTase   1 rfmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLqll 96 
                    r+mka+i++e++rrg ++     niKlG+GG+R+ efivqv+qlirGgr+++l+ r++l ++++++ +gll++e++++lreay flrrle+ Lq l
     EHU02024.1 296 RNMKAMISREVRRRGLKN-----NIKLGAGGIRETEFIVQVFQLIRGGRERSLQLRALLPTISAIESLGLLPPEQVAALREAYLFLRRLENLLQSL 386
                    68****************.....************************************************************************* PP

  GlnD_UR_UTase  97 adrqthrLpfdeeeqrrlaealgyredkaafmkelfqhaerVrrlfekll 146
                    ad+qt++Lp+d+ +++rla a+++ +d++++ ++l +h+  Vr++f++l+
     EHU02024.1 387 ADEQTQTLPEDALHRARLAWAMQC-QDWSELSAKLDTHMAAVRAIFDELI 435
                    ************************.**********************986 PP

  == domain 3  score: 40.6 bits;  conditional E-value: 5.8e-14
  GlnD_UR_UTase   1 rfmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpel.rerstlealeelvergllteeeakelreayrflrrlehrLql 95 
                    r+m+ k++++   +++ +     +iK+ +GG+ diefi+q l l +   +p+l r +++++  e +++++ + ++ea++l +ay  lr+  h+L l
     EHU02024.1 824 REMRDKMRAHLSNKHKGR----WEIKTDEGGITDIEFIAQYLVLRYAAAEPALtRWSDNVRIFELMANHQKMADDEAAALTHAYVTLRDALHHLAL 915
                    689999999998888888....89*****************************88999***********************************976 PP

  GlnD_UR_UTase  96 l 96 
                    +
     EHU02024.1 916 Q 916
                    5 PP

>> DUF2924  Protein of unknown function (DUF2924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.4e-05      0.33       3      62 ..     365     427 ..     363     441 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.4e-05
     DUF2924   3 elaaLke..lsvkeLkekwrelfgeeapk.lnkeflekrlayriqelaeggLseearrrleel 62 
                 ++aaL+e  l +++L++  ++l +e++++  + ++ + rla+ +q++  ++Ls++  ++++++
  EHU02024.1 365 QVAALREayLFLRRLENLLQSLADEQTQTlPEDALHRARLAWAMQCQDWSELSAKLDTHMAAV 427
                 5666666223468999999**********4455555779***************999988765 PP

>> AbiEii  Nucleotidyl transferase AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0033        15      33      92 ..     169     240 ..     169     280 .. 0.87
   2 ?    0.4   0.1      0.11     5e+02     163     212 ..     448     494 ..     447     522 .. 0.67
   3 ?   -1.0   0.1      0.31   1.4e+03     176     218 ..     590     633 ..     575     668 .. 0.60
   4 ?    0.9   0.0     0.084   3.8e+02      33      81 ..     697     758 ..     697     821 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0033
      AbiEii  33 fSeDIDlsllr............gdrkellealkealeeiaaalaeeglkvklaasigegedyeglrlrypa 92 
                 fS DIDl +++             d+ +++ ++ ++l ++  +++++g++++++ ++++ +d + l +++ a
  EHU02024.1 169 FSSDIDLIFVWpdngstrggrreLDNAQFFTRMGQRLIKVLDQPTADGFVYRVDMRLRPFGDSGPLVMSFAA 240
                 8************************************************99998888776666555555555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
      AbiEii 163 lyDlalLleaeldaealaeallaylasrgrpgelrlaplellreaeadea 212
                 l D+ +L+++ l++ +la ++ +  a++++   l++   e++r+   +  
  EHU02024.1 448 LADFNMLWQDSLEDSELAPLVPQLDAEHCQ--ALNQSL-EAFRQDISRRS 494
                 579***************************..444444.33333333332 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.31
      AbiEii 176 aealaeallaylasrgr.pgelrlaplellreaeadealradwk 218
                 ++a+++ l++yl +    ++e +l+ l+++++a++  + +ad +
  EHU02024.1 590 TDAYRDELRQYLMRIPAdDEEQQLEALRQFKQAQMLRIAAADIA 633
                 33333444444433333555555555555555555555555544 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.084
      AbiEii  33 fSeDIDlsllr.............gdrkellealkealeeiaaalaeeglkvklaasigege 81 
                 +S D+Dl++l+              d +++  +l +++ ++++ +++ g+ ++++a++++ +
  EHU02024.1 697 YSSDLDLVFLHdcpldavtqgersIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSG 758
                 699******99*********9999999999999********999999999999999988763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6807.63
//
Query:       EHU02025.1  [L=436]
Description: adenylate cyclase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-30  105.3   0.0    6.2e-30  104.4   0.0    1.5  1  CYTH      CYTH domain


Domain annotation for each model (and alignments):
>> CYTH  CYTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   3.5e-34   6.2e-30       2     179 .]       3     196 ..       2     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 3.5e-34
                 EEEEEEEEE-HHHHHHHHHHHHHCTCEEEEEEEEEEEEEE-TTTHHHHTTEEEEEEEETTTEEEEEEEEECSSSTEEEEEEEECCCEEECCCC...... CS
        CYTH   2 iEvEvKflvsaaeyedlelrlaelrakeettveqrdtYydtpdrdlartdeaLRiRraegdgeeltlKgpgvdgereevegevsreEyeepls...... 94 
                 iE+E+Kf  +++++ +l++rla +  ++   ++++++Y++t d++l+r  + LRiR   ++++e+tlK++g       + g+++r Ey++ l       
  EHU02025.1   3 IEIELKFIAKPNAAGKLAERLAAFPHQHQAARQLTNIYFETDDNQLRRWNMGLRIRGV-DQRYEMTLKTAG-----STLGGLHQRGEYNVDLTeptldi 95 
                 7*********999999999*****9*******************************77.66666*******.....6789***********999***** PP

                 ......HHHHHHHHHHHTT.-EEEEEEEEEEEEEEE....TTEEEEEEEETTT......TEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBSC CS
        CYTH  95 ......daaeaaelldglg.lepvasvkklRrkykl....egvevalDavefl......egeevEiElevedeeevkeaaekllallrelglssaskir 176
                       +++e+ ++ + ++ l p++s+++ R+++ +     +ve+a+D++e+       +  evE+El+++++++ +++a++ l +   l+  s sk++
  EHU02025.1  96 srlpadIWPEGTDIAALQQrLNPLFSTHFDREIWLVtagkSEVEIAFDKGEVAagehqdALSEVELELKSGERSDMLAFAQQ-LIAVGDLRMGSLSKAA 193
                 **********9999999999****************754434****************************************.9999************ PP

                 SHH CS
        CYTH 177 rsy 179
                 r+y
  EHU02025.1 194 RGY 196
                 *99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3212.09
//
Query:       EHU02026.1  [L=206]
Description: putative signal transduction protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-07   29.1   0.0    1.5e-06   28.4   0.0    1.3  1  SH3_3            Bacterial SH3 domain
    4.1e-05   23.6   4.4    4.1e-05   23.6   4.4    1.7  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
    0.00011   20.6   2.3    0.00014   20.3   2.3    1.0  1  FPP              Filament-like plant protein, long coiled-coi
     0.0022   18.0   1.6     0.0033   17.4   1.6    1.2  1  Ax_dynein_light  Axonemal dynein light chain
     0.0033   17.8   3.3       0.14   12.6   1.0    2.4  2  FlaC_arch        Flagella accessory protein C (FlaC)
     0.0037   17.5   6.8     0.0064   16.7   6.8    1.3  1  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
     0.0049   16.9   5.2      0.019   15.0   5.2    1.9  1  TolA_bind_tri    TolA binding protein trimerisation
     0.0054   16.4   3.0     0.0075   15.9   3.0    1.1  1  Lebercilin       Ciliary protein causing Leber congenital ama
     0.0065   17.0   0.4     0.0076   16.8   0.4    1.2  1  DUF2408          Protein of unknown function (DUF2408)
     0.0085   14.8   0.2       0.01   14.5   0.2    1.1  1  FapA             Flagellar Assembly Protein A
     0.0099   15.4   1.9      0.012   15.1   1.9    1.1  1  Golgin_A5        Golgin subfamily A member 5
  ------ inclusion threshold ------
      0.016   15.2   0.7      0.024   14.6   0.7    1.3  1  Noelin-1         Neurogenesis glycoprotein
       0.02   14.2   4.7      0.044   13.1   4.8    1.4  1  DUF4407          Domain of unknown function (DUF4407)
       0.02   15.0   7.2      0.059   13.5   7.1    1.7  1  ADIP             Afadin- and alpha -actinin-Binding
      0.023   12.2   2.9       0.03   11.9   2.9    1.0  1  DUF3584          Protein of unknown function (DUF3584)
      0.026   14.3   4.2      0.036   13.9   4.2    1.2  1  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
      0.032   13.9   0.8      0.038   13.6   0.8    1.1  1  BAR              BAR domain
      0.049   14.1   1.7        0.3   11.6   0.4    2.2  2  Cep57_MT_bd      Centrosome microtubule-binding domain of Cep
       0.05   13.4   2.0      0.069   13.0   2.0    1.1  1  DUF724           Protein of unknown function (DUF724)
       0.05   12.5   5.7      0.067   12.1   5.7    1.1  1  Spc7             Spc7 kinetochore protein
       0.05   14.5   1.6      0.094   13.6   1.6    1.5  1  CSN5_C           Cop9 signalosome subunit 5 C-terminal domain
      0.058   13.6   2.1      0.092   13.0   2.1    1.4  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
      0.064   12.6   8.0       0.19   11.1   5.5    2.0  2  GAS              Growth-arrest specific micro-tubule binding
      0.071   13.2   7.4        1.1    9.4   7.7    2.0  2  DivIVA           DivIVA protein
      0.085   13.1   1.6       0.13   12.5   1.1    1.6  1  DUF948           Bacterial protein of unknown function (DUF94
        0.1   12.8   5.9       0.29   11.3   5.9    1.6  1  Tropomyosin_1    Tropomyosin like
       0.11   10.4   2.8       0.14   10.1   2.8    1.1  1  Prominin         Prominin
       0.12   12.6   1.0       0.54   10.5   1.0    2.1  1  ABC_tran_CTD     ABC transporter C-terminal domain
       0.13   12.3   1.7       0.28   11.3   0.1    2.1  2  MbeD_MobD        MbeD/MobD like
       0.14   12.1   4.0       0.36   10.7   0.5    2.1  2  Lipoprotein_20   YfhG lipoprotein
       0.17   11.9  10.0        1.8    8.6   9.7    2.2  1  FlxA             FlxA-like protein
       0.17   12.8   7.1        5.3    8.0   7.1    2.2  1  PRKG1_interact   cGMP-dependent protein kinase interacting do
       0.21   11.8   2.2        6.5    7.1   0.3    2.4  2  HALZ             Homeobox associated leucine zipper
       0.23   11.8   2.6       0.69   10.3   0.2    2.3  2  CLZ              C-terminal leucine zipper domain of cyclic n
       0.26   11.7   5.5       0.42   11.0   5.5    1.3  1  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
       0.48   10.2   5.7       0.18   11.6   3.7    1.3  1  DUF445           Protein of unknown function (DUF445)
       0.57   10.2   5.3       0.86    9.6   5.3    1.2  1  DUF1664          Protein of unknown function (DUF1664)
       0.76    9.6   6.4         13    5.7   2.2    2.6  2  DivIC            Septum formation initiator
       0.83    9.8   5.7        4.8    7.3   0.8    2.3  2  Swi5             Swi5
       0.94    9.7   7.0        1.4    9.1   7.0    1.1  1  Fib_alpha        Fibrinogen alpha/beta chain family
        1.2    9.5   7.0        2.9    8.3   0.4    2.3  2  Csm1_N           Csm1 N-terminal domain
        1.3    9.7   3.8        4.6    8.0   3.8    1.8  1  YabA             Initiation control protein YabA
        1.4    9.4   6.9         13    6.4   6.2    2.4  2  ZapB             Cell division protein ZapB
        1.5    8.8   7.8       0.64    9.9   4.1    2.1  2  GIT_CC           GIT coiled-coil Rho guanine nucleotide excha
        7.2    7.1   8.2         20    5.7   7.5    2.0  1  DUF16            Protein of unknown function DUF16
        7.9    6.4   9.2         13    5.7   0.3    3.0  3  YscO             Type III secretion protein YscO


Domain annotation for each model (and alignments):
>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.8e-09   1.5e-06       4      54 ..      35      85 ..      32      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.8e-09
       SH3_3  4 nvRsgPstssevigtlpyGekVevleetgggeWykvrtddgteGwvssgyl 54
                 vRsgP+ + + +g+l++Ge+Ve+l   + +++ +vr+  g++ w+  + l
  EHU02026.1 35 WVRSGPGDQFRLLGKLNAGEQVELLQTNDATKYGQVRDAEGRTVWIPLSQL 85
                59*******************************************976665 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   4.4     1e-07   4.1e-05      66     125 ..      88     147 ..      82     148 .. 0.93
   2 !    9.2   0.5    0.0032       1.2      59      92 ..     134     167 ..     126     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1e-07
  TPR_MLP1_2  66 lnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQ 125
                   +l++++ +l++++++++a+l++  +sw+++  e++++++++ + i+ l+eqN+ L + 
  EHU02026.1  88 NPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNE 147
                 568999*************************************************99775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0032
  TPR_MLP1_2  59 lqalreelnelkaeiaelkaeaesakaeleesee 92 
                 ++ l+e+ ++lk+e+  +++++++a+ +l+ ++ 
  EHU02026.1 134 INGLKEQNQKLKNELIVAQKKVNAANVQLDDKQR 167
                 6789999999999999999999999999998876 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.3   3.5e-07   0.00014     716     793 ..      86     167 ..      69     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.5e-07
         FPP 716 enleslkaqlqesEqllaelkseLeslkes..kslaetqlk..cmkesyesletrateleaelnelkqkieaLeveLeeekk 793
                 +++ sl ++  + Eq++++l+++L+++ +s  ++ ae q k  +   + + l  + ++l++el  +++k++a +v+L+++++
  EHU02026.1  86 SENPSLRTRVPQLEQQVKDLTAKLANIDNSwnQRTAEMQNKvaSSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQR 167
                 4567899999*******************9545566766551144567888****************************987 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.6   8.5e-06    0.0033     129     185 ..      89     148 ..      82     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.5e-06
  Ax_dynein_light 129 keLeeekeelekqvaelkaklealekreker...rqeeekkheeeieflkksnqqlkeql 185
                       +L++++ +le+qv++l+akl++++++ ++r   +q++    +  i+ lk++nq+lk++l
       EHU02026.1  89 PSLRTRVPQLEQQVKDLTAKLANIDNSWNQRtaeMQNKVASSDSVINGLKEQNQKLKNEL 148
                      579999999**********999998776665111555555677789***********997 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.076        29      22      40 ..      87     105 ..      83     115 .. 0.80
   2 !   12.6   1.0   0.00035      0.14       1      30 [.     119     148 ..     119     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.076
   FlaC_arch  22 eneelsksveelkenVkdl 40 
                 en +l++ v +l+++Vkdl
  EHU02026.1  87 ENPSLRTRVPQLEQQVKDL 105
                 7778888888888888887 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00035
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksv 30 
                 r+ e++nk+ + ++ ++ +k++n++l++++
  EHU02026.1 119 RTAEMQNKVASSDSVINGLKEQNQKLKNEL 148
                 6789***********************987 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   6.8   1.6e-05    0.0064      29     104 ..      93     169 ..      82     171 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  Seryl_tRNA_N  29 delleldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleaeleklllai 104
                    ++ +l+++ + l ++l ++ +  N+ ++e++++ ++    ++ l+++ ++lk+el  +++++++++ +l+++ ++i
    EHU02026.1  93 TRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSdSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRTI 169
                   67889*******************************99999*******************************99998 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   5.2   4.9e-05     0.019       2      67 ..     102     167 ..      90     171 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.9e-05
  TolA_bind_tri   2 ledrvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlr 67 
                    ++d  a+L +i ++ +q   e+q+++ +  + ++ L+ q+++l+++l  ++++ +   ++lD   r
     EHU02026.1 102 VKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQR 167
                    3334445555555555****************************************9999998776 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.0   1.9e-05    0.0075     107     192 ..      82     168 ..      76     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-05
  Lebercilin 107 lkkLsedknLaere.eLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeierlkqklkeKere 192
                 l++Lse+ +L+ r  +L++++++l+akl + ++  ++   +++++  s +  ++  k++ +++++e+  +q++++  + +l +K+r 
  EHU02026.1  82 LSQLSENPSLRTRVpQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRT 168
                 8899******999549********************9999999999999999********************************995 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4   1.9e-05    0.0076      39     102 ..      75     156 ..      13     170 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-05
     DUF2408  39 e......................vkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgeek 102
                                        +++++k+l ++L +i+++ ++  +  + e ++ v ++++v+ngL +++ +l ++l   +++ +
  EHU02026.1  75 GrtvwiplsqlsenpslrtrvpqLEQQVKDLTAKLANIDNSWNQ--R--TAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVN 156
                 15555555555555664444444667777777777777776666..3..33444578899****************9988763322 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   2.6e-05      0.01     303     411 ..      53     165 ..      40     184 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
        FapA 303 gn.ikalkevkakklGs..elgtkte...ievgldepelkeklkeleeeleeleeeleklkkk.....ikklpklkaekqlesekkeqlkklletkekl 390
                 g+ +++l++ +a k G   +++ +t    +++  ++p+l+ ++ +le+++++l ++l +++++      +  +k + ++ +          l+e+ +kl
  EHU02026.1  53 GEqVELLQTNDATKYGQvrDAEGRTVwipLSQLSENPSLRTRVPQLEQQVKDLTAKLANIDNSwnqrtAEMQNKVASSDSVING-------LKEQNQKL 144
                 555666666666666666644444431114443455999999999********9999999999444432222222223333444.......44444444 PP

        FapA 391 keeleeleeelkelkeelesk 411
                 k+el   +++ ++ + +l++k
  EHU02026.1 145 KNELIVAQKKVNAANVQLDDK 165
                 444444444444444444433 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.9   3.2e-05     0.012      55     136 ..      87     168 ..      64     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.2e-05
   Golgin_A5  55 erdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskat 136
                 e+  lr  + +l+qq+++l ++l++++++ ++ + +++++++++++ ++  +++++++++el   ++++++++ +l  ++ t
  EHU02026.1  87 ENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRT 168
                 5667899999****************************************************99999999988777766655 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.7   6.2e-05     0.024      10      89 ..      67     147 ..      60     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-05
    Noelin-1  10 yssaqdadGrCvCtvvaPaqdvCsrDarsrqlrqllekvqnlsqsievld....lRtsrdlqyvrktetllktlesklkvveed 89 
                 y+  +da+Gr   tv +P  ++ ++ +  +++ ql+++v++l+ ++  +d    +Rt++  + v ++++++++l+++ ++++++
  EHU02026.1  67 YGQVRDAEGR---TVWIPLSQLSENPSLRTRVPQLEQQVKDLTAKLANIDnswnQRTAEMQNKVASSDSVINGLKEQNQKLKNE 147
                 6777888888...78899999999888888999999999999988877642222799999999***********9998877664 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.8   0.00011     0.044     130     210 ..      73     166 ..      53     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
     DUF4407 130 a.................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldata 210
                 a                 l++++ +le+q+++l a++++ ++ +++ +ae+q+++        + ++G  +  ++ k++l  aq+++++++ +ld ++
  EHU02026.1  73 AegrtvwiplsqlsenpsLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVAS----SDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQ 166
                 34566666666666678899********************************99884....4467899999999999999999999999999976444 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   7.1   0.00015     0.059      67     125 ..      86     148 ..      82     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00015
        ADIP  67 aeierlqskierlktqleqlerela....lvqakerqlekklktleqklknekeelqrlknal 125
                 +e+ +l++++ +l++q+++l+ +la    ++++++++++ k+++ ++ ++++ke++q+lkn l
  EHU02026.1  86 SENPSLRTRVPQLEQQVKDLTAKLAnidnSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNEL 148
                 677788999999999999999887633256888999999999999999999999999999865 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.9   7.6e-05      0.03     813     892 ..      84     162 ..      75     172 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.6e-05
     DUF3584 813 laeerpalkeqveelesaaeeleqeltrliedtklerkklekerkalekqldqldenlrklrdllsklaelkldadaeqa 892
                    e+p l ++v +le+++++l+ +l+++ ++ +++ ++++++  +++  ++ l+e+ +kl+ +l  +a+ k++a + q+
  EHU02026.1  84 QLSENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELI-VAQKKVNAANVQL 162
                 345789999999999999999999999999999999999999999998888888888888877652.2444444444333 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.2   9.2e-05     0.036     109     175 ..      90     156 ..      83     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.2e-05
  Bacillus_HBL 109 kLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgkik 175
                    L++ + q +++vk+l ++L +  ++ ++ +++ +++v+  +s+++g + + ++l+ne+  +q+k++
    EHU02026.1  90 SLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVN 156
                   5899999****************************************************99999987 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   9.8e-05     0.038     132     196 ..      92     164 ..      52     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-05
         BAR 132 ekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde.........ekaeeelrkAqqkfeesneelka 196
                  + ++++++++k l  k+  +D++ ++    + +++  ++d+         +k+++el +Aq+k++  n +l +
  EHU02026.1  92 RTRVPQLEQQVKDLTAKLANIDNSWNQRTA-EMQNKVASSDSvinglkeqnQKLKNELIVAQKKVNAANVQLDD 164
                 4678999***************99876553.3334444455578899999********************9976 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       1.1   4.3e+02      10      45 ..      88     123 ..      83     131 .. 0.74
   2 ?   11.6   0.4   0.00076       0.3      15      54 ..     132     171 ..     124     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 1.1
  Cep57_MT_bd  10 keaLaevlkeLedEfehlklelqelaaqynaldpsl 45 
                  + +L + + +Le +++ l ++l+      n+ ++ +
   EHU02026.1  88 NPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEM 123
                  567888888888888888888888877777766655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00076
  Cep57_MT_bd  15 evlkeLedEfehlklelqelaaqynaldpslgkrkRkdLa 54 
                  +v+++L+++ ++lk el   +++ na +  l+ ++R++++
   EHU02026.1 132 SVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRTIIM 171
                  79**********************************9986 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.0   0.00018     0.069      85     179 ..      76     167 ..      69     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00018
      DUF724  85 FdVkalqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveq 179
                   V  ++s+l++  sl+++  +l+++ k+l  k+++ +++    ++  +e+++k++        lke++++ ++e+   ++++++++++l+d ++
  EHU02026.1  76 RTVWIPLSQLSENPSLRTRVPQLEQQVKDLTAKLANIDNS---WNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQR 167
                 56778999999999****************9999987774...4578888999999999999999999999999999999999999999888765 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.7   0.00017     0.067     169     247 ..      88     166 ..      83     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
        Spc7 169 lpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksele 247
                  p+l+++  +le+++++l ++ ++++++ +++ +e+++++a+ ++ i+ +k++ ++l+++l   ++k+++++ q ++ +
  EHU02026.1  88 NPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQ 166
                 588999999******************************************************9999999998877655 PP

>> CSN5_C  Cop9 signalosome subunit 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.6   0.00024     0.094      13      60 ..      99     144 ..      88     171 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00024
      CSN5_C  13 tkqisDLaeKlekaessvsrsrsaagtlseeaseaeekkkkkkedsqL 60 
                  +q++DL++Kl+++++s++++ ++++   +++++    ++ k+++++L
  EHU02026.1  99 EQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDS--VINGLKEQNQKL 144
                 58****************9999888555543332..222233333333 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.1   0.00024     0.092      58     127 ..      87     153 ..      53     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00024
  Jnk-SapK_ap_N  58 eleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekea 127
                    e+ +L+t+  +  ++ k+   +l +i+++w++++ e+q+kv++ ++ ++ l+ + +++++   +l   ++
     EHU02026.1  87 ENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKN---ELIVAQK 153
                    566777777777888888888999999999999999999999988888888833333332...3333333 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.11        43      54      81 ..      86     113 ..      83     117 .. 0.85
   2 ?   11.1   5.5   0.00048      0.19      25      82 ..     110     167 ..     103     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
         GAS  54 qenkrlkepLkkaeeeveeLrkqlknye 81 
                 +en +l+  + ++e++v+ L ++l+n +
  EHU02026.1  86 SENPSLRTRVPQLEQQVKDLTAKLANID 113
                 5889999999999999999999999865 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00048
         GAS  25 LelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyek 82 
                  ++ +s+ +  +e+++k ++ +  ++ ++++n++lk +L  a+++v+  + ql + ++
  EHU02026.1 110 ANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQR 167
                 45556788889******************************************99876 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.49   1.9e+02      39      66 ..      86     113 ..      83     116 .. 0.64
   2 ?    9.4   7.7    0.0027       1.1      36      91 ..     115     170 ..      99     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHCCCCTXXXXXXXXXXXX CS
      DivIVA  39 keneelkekvkeleeklkeykeleetLk 66 
                 +en +l+++v +le+++k+ +    ++ 
  EHU02026.1  86 SENPSLRTRVPQLEQQVKDLTAKLANID 113
                 5677777777777777776665555544 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  36 allkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaelii 91 
                 +  ++ +e+++kv+  ++ ++  ke++++Lk+ l+vaq+  + +  +  +++++ii
  EHU02026.1 115 SWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRTII 170
                 5567889********************************99998888887777776 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1   0.00033      0.13      31      82 ..      91     142 ..      80     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00033
      DUF948  31 aaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlge 82 
                 +++++ +le+qv+ ++ +++++ +  n+ ++++++k+++ d++++ +++  +
  EHU02026.1  91 LRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQ 142
                 788999************************************9988877655 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.9   0.00073      0.29      38     105 ..      89     164 ..      81     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00073
  Tropomyosin_1  38 ksLtkknqqleeevekleeklkeakekaeesekkktnne........altrkiqlLEeeleesdkkLkettekLre 105
                     sL +++ qle++v  l +kl +  ++ ++ + + +n+          l+ ++q L +el  ++kk++ ++ +L +
     EHU02026.1  89 PSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVassdsvinGLKEQNQKLKNELIVAQKKVNAANVQLDD 164
                    5788888888888888888888877766655544433334455777799*******************99999976 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.8   0.00035      0.14     639     717 ..      94     171 ..      58     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00035
    Prominin 639 elsngkknlkqslkneaqdlraiqq...elvlplessvkklkksvkkldeensdlqesikkllaaveraenflkkngseiin 717
                 ++     +l+q++k    +l +i++   +++ +++++v++  + ++ l+e+n++l++++    ++v++a+  l+++  +ii 
  EHU02026.1  94 RV----PQLEQQVKDLTAKLANIDNswnQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRTIIM 171
                 33....34555555555555555550005566699999999999*******************************9999996 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0    0.0014      0.54      13      52 ..      91     129 ..      83     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0014
  ABC_tran_CTD  13 leaeIeaLEeeiaeleaeladpelysdpeklaelsaelee 52 
                   l  +  +LE++ ++l+a+la+ +  s  ++ ae +++ + 
    EHU02026.1  91 LRTRVPQLEQQVKDLTAKLANIDN-SWNQRTAEMQNKVAS 129
                   667899**************9993.333778888777665 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00072      0.28      43      66 ..      87     110 ..      80     114 .. 0.88
   2 ?   -0.2   0.1       2.8   1.1e+03      22      62 ..     119     145 ..     109     163 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00072
   MbeD_MobD  43 enaaLseqvtgLsqQVesLseqvr 66 
                 en  L+ +v +L qQV++L  +++
  EHU02026.1  87 ENPSLRTRVPQLEQQVKDLTAKLA 110
                 7889***************99886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.8
   MbeD_MobD  22 rlqeWesafaelqrmfeltqrenaaLseqvtgLsqQVesLs 62 
                 r  e ++  a+   +              ++gL  Q ++L 
  EHU02026.1 119 RTAEMQNKVASSDSV--------------INGLKEQNQKLK 145
                 333333333333333..............334444444443 PP

>> Lipoprotein_20  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.6      0.28   1.1e+02      99     157 ..      58     114 ..      49     127 .. 0.78
   2 ?   10.7   0.5   0.00093      0.36     120     153 ..     123     156 ..     115     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.28
  Lipoprotein_20  99 llqlWreqqalqlalaeeraryqrlqeesdskldslreqqaaLeaeLeettrKLenLtd 157
                     llq+  + ++ q++ ae r+ +  l + s++   slr++  +Le+++++ t KL n+ +
      EHU02026.1  58 LLQTNDATKYGQVRDAEGRTVWIPLSQLSEN--PSLRTRVPQLEQQVKDLTAKLANIDN 114
                     5666666677777777777777777777777..589999999*******9999999765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00093
  Lipoprotein_20 120 yqrlqeesdskldslreqqaaLeaeLeettrKLe 153
                      q   ++sds ++ l+eq+++L++eL   ++K++
      EHU02026.1 123 MQNKVASSDSVINGLKEQNQKLKNELIVAQKKVN 156
                     4566789************************986 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.7    0.0045       1.8       8      76 ..      84     152 ..      81     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0045
        FlxA   8 ssssssgsasqiasLqkQiknlqkqLkelses.deltkeekkkqqqliqaQIqqlqaQIaqlqqqqaeka 76 
                 + s + +  +++ +L++Q+k+l+ +L ++ +s ++ t+e  +++     + I+ l+ Q ++l+++    +
  EHU02026.1  84 QLSENPSLRTRVPQLEQQVKDLTAKLANIDNSwNQRTAE-MQNKVASSDSVINGLKEQNQKLKNELIVAQ 152
                 6677888889999*******************6555555.777777777778888888777777753333 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.1     0.014       5.3      10      88 ..      85     164 ..      82     170 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.014
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeel.keleeLraenqrLkd 88 
                     ++en  L++++ +le+++++l+++l++++++ ++++++ ++ +  +++  + l+++ ++l +el    +++ a n +L d
      EHU02026.1  85 LSENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELiVAQKKVNAANVQLDD 164
                     67899999999999999999999999998775555555544444444444555555555555541333445555555555 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.14        53      29      42 ..      96     109 ..      85     110 .. 0.75
   2 ?    7.1   0.3     0.017       6.5      23      35 ..     136     148 ..     132     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.14
        HALZ  29 ekLkaelqeLkekl 42 
                  +L+++++ L++kl
  EHU02026.1  96 PQLEQQVKDLTAKL 109
                 57999******998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.017
        HALZ  23 sLkkenekLkael 35 
                  Lk++n+kLk+el
  EHU02026.1 136 GLKEQNQKLKNEL 148
                 599*********8 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2    0.0018      0.69      24      66 ..      86     128 ..      82     131 .. 0.89
   2 ?    4.4   0.4      0.13        50      25      64 ..     119     158 ..     112     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0018
         CLZ  24 aeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRit 66 
                 +e+ +l ++v +Le++++ L+ +la + +  ++  ++++++++
  EHU02026.1  86 SENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVA 128
                 56778999********************999999999998876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.13
         CLZ  25 eqkeleekverLessLeaLqtrlarLlaeyessqrkLkqR 64 
                    e+++kv + +s ++ L+ + ++L +e+  +q+k ++ 
  EHU02026.1 119 RTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAA 158
                 56789999999999999999999***99999999998875 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.5    0.0011      0.42       7      73 ..      92     160 ..      85     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0011
  Uso1_p115_C   7 eseaaslkdeneklkaelqslskalesleqk..eakkaaesqakeleaenkklekeleklraelkeeke 73 
                   +++ +l+++ ++l a+l + +++ ++   +  ++ ++++s+ + l+++n+kl++el  +++++++++ 
   EHU02026.1  92 RTRVPQLEQQVKDLTAKLANIDNSWNQRTAEmqNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANV 160
                  566778999999999999999888887766665667778889999999999999999888888887754 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.7   0.00047      0.18     192     305 ..      56     168 ..      20     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00047
      DUF445 192 tsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdlneeesllrerisklleklgeklaedpk 290
                 +++l+  ++++  ++r++e ++v   +++l ++p+l+++v +l +++ + +++ ++ ++ w++ ++ +++++++++  + + +++ ++kl+++l+  +k
  EHU02026.1  56 VELLQTNDATKYGQVRDAEGRTVWIPLSQLSENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSD-SVINGLKEQNQKLKNELIVAQK 153
                 566777777788899***********************************************************99.999999********99999888 PP

      DUF445 291 lreklnkflenaaak 305
                   +  n +l ++ ++
  EHU02026.1 154 KVNAANVQLDDKQRT 168
                 887777777766555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.3    0.0022      0.86      39     105 ..      98     164 ..      92     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0022
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                 l++ v++++ +l ++ +s ++   ++++++++ d+ ++  ke  +++k+e+  +++++++ + +++ 
  EHU02026.1  98 LEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDD 164
                 88999***************************************************99988777665 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5     0.035        14      20      41 ..      96     117 ..      88     125 .. 0.73
   2 ?    5.7   2.2     0.033        13      19      47 ..     120     148 ..     110     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  20 kqlkqeiaalqaelaklkaene 41 
                  ql+q++++l+a+la++ +  +
  EHU02026.1  96 PQLEQQVKDLTAKLANIDNSWN 117
                 5889999999999988877655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaev 47 
                   ++++++a     ++ lk++n++L+ e+
  EHU02026.1 120 TAEMQNKVASSDSVINGLKEQNQKLKNEL 148
                 56789999999999***********9986 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.8     0.012       4.8       2      47 ..      92     141 ..      91     142 .. 0.74
   2 ?    5.7   1.2     0.039        15       5      39 ..     134     168 ..     130     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHH CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekk....dpeetvkrhIklLheYN 47 
                 ++++ +le+q++ l ++la++++  ++++    ++ +  ++ I+ L+e N
  EHU02026.1  92 RTRVPQLEQQVKDLTAKLANIDNSWNQRTaemqNKVASSDSVINGLKEQN 141
                 67888999999999999999998888777665556666677777777766 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.039
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS
        Swi5   5 ikeleeqleelekelaelkeelkekkdpeetvkrh 39 
                 i+ l+eq ++l++el  ++++ ++ +   + ++r 
  EHU02026.1 134 INGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRT 168
                 778999*************9999877555555554 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.0    0.0035       1.4      30     106 ..      88     164 ..      84     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0035
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirv 106
                 ++++++++ +le+++++++ +  ++++  ++ +  +++k +s++   n +k+ +++l++e +  +++++a   ++  
  EHU02026.1  88 NPSLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDD 164
                 67789999999999999999999999999999999999999999889999999**************9998877665 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.4    0.0074       2.9      27      60 ..      86     119 ..      83     126 .. 0.81
   2 ?    3.5   2.6      0.23        91      12      46 ..     124     158 ..     121     169 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0074
      Csm1_N  27 hENsvLsqkletkdqeiesLkeqlaeleekvkel 60 
                  EN  L++++ + +q+++ L ++la++++  ++ 
  EHU02026.1  86 SENPSLRTRVPQLEQQVKDLTAKLANIDNSWNQR 119
                 6999999999999999999999999998876654 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.23
      Csm1_N  12 qerldsAdllvsklvhENsvLsqkletkdqeiesL 46 
                 q+++ s d +++ l + N+ L+++l + ++++++ 
  EHU02026.1 124 QNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAA 158
                 44555555555555555555555555555555554 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.8     0.012       4.6       6      61 ..      91     157 ..      86     173 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHHHHHXXXXXXXXX CS
        YabA   6 lfdkleeleeqleelleeleelkeelaelleenaeLele...........neklrerleeeekkeke 61 
                 l +++ +le+q+++l+++l+++ +++++ + e ++  +            n+kl+++l  ++kk ++
  EHU02026.1  91 LRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEMQNKVASsdsvinglkeqNQKLKNELIVAQKKVNA 157
                 6678889999999999999999988887766655444442355555555566666666333333333 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.6      0.11        42      22      56 ..      90     125 ..      83     130 .. 0.65
   2 ?    6.4   6.2     0.032        13       8      63 ..      97     156 ..      95     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.11
        ZapB  22 lLqmeieeLkeeneelkeenrele.eeneqlkeere 56 
                 +L+ ++ +L+++++ l+ + +++  + n++  e ++
  EHU02026.1  90 SLRTRVPQLEQQVKDLTAKLANIDnSWNQRTAEMQN 125
                 577778888888888888777777444444444444 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.032
        ZapB   8 qLEskiqkaidtitlL....qmeieeLkeeneelkeenreleeeneqlkeereawqerlk 63 
                 qLE++++ +  +++       ++ +e++ ++++  + ++ l+e+n++lk+e    q++++
  EHU02026.1  97 QLEQQVKDLTAKLANIdnswNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVN 156
                 677777777777776622224588899999999999999999999999999888777765 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.5       0.8   3.1e+02      34      53 ..     108     127 ..      85     127 .. 0.68
   2 ?    9.9   4.1    0.0016      0.64      20      54 ..     122     156 ..     118     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.8
      GIT_CC  34 qLlkvNtslsdelrlLQskv 53 
                 +L ++ +s ++  +++Q+kv
  EHU02026.1 108 KLANIDNSWNQRTAEMQNKV 127
                 36777788888888888876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0016
      GIT_CC  20 elKkalaaseakiqqLlkvNtslsdelrlLQskvq 54 
                 e+ +++a s++ i+ L++ N++l++el   Q+kv+
  EHU02026.1 122 EMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVN 156
                 7889****************************997 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.5     0.052        20      28      84 ..     112     168 ..      84     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.052
                 B-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......H CS
       DUF16  28 fkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdet 84 
                   +s +qr  ++++kv++ +  in l+++ +k+ +++   +++++a + +l+  ++t
  EHU02026.1 112 IDNSWNQRTAEMQNKVASSDSVINGLKEQNQKLKNELIVAQKKVNAANVQLDDKQRT 168
                 455678999999999999999999999999999999889999999999888877766 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.65   2.5e+02      73      95 ..      54      76 ..      43      78 .. 0.85
   2 ?    5.7   0.3     0.034        13      77     110 ..      90     123 ..      85     129 .. 0.79
   3 ?    2.8   2.2      0.27   1.1e+02      75     107 ..     134     166 ..     112     170 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.65
                HHHHHHHHHHHHHHHHHHHHHHH CS
        YscO 73 qqvalLrekeaelekqveeakqq 95
                +qv lL+ + a ++ qv +a+ +
  EHU02026.1 54 EQVELLQTNDATKYGQVRDAEGR 76
                89*****************9976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  77 lLrekeaelekqveeakqqleaerealrqarkel 110
                 +Lr ++ +le+qv++++++l +  +  +q  +e+
  EHU02026.1  90 SLRTRVPQLEQQVKDLTAKLANIDNSWNQRTAEM 123
                 79999999*****999999987666666655555 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  75 valLrekeaelekqveeakqqleaerealrqar 107
                 +  L+e+ ++l++++  a+++++a+  +l++++
  EHU02026.1 134 INGLKEQNQKLKNELIVAQKKVNAANVQLDDKQ 166
                 556667777777777777777766666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1990  (0.110993); expected 358.6 (0.02)
Passed bias filter:                     1120  (0.0624686); expected 358.6 (0.02)
Passed Vit filter:                       238  (0.0132746); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 1447.67
//
Query:       EHU02027.1  [L=405]
Description: tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'-nucleotidase/phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-18   66.0   0.0    1.9e-17   63.9   0.0    2.1  2  PolyA_pol        Poly A polymerase head domain
    5.4e-17   61.3   0.0    1.2e-16   60.2   0.0    1.6  1  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
    1.4e-10   41.5   0.5    4.1e-10   39.9   0.1    2.0  2  HD               HD domain


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   3.2e-21   1.9e-17       2     126 .]       4     122 ..       3     122 .. 0.80
   2 ?   -1.5   0.0      0.54   3.2e+03       8      56 ..     294     343 ..     292     397 .. 0.60

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 3.2e-21
                 EEETHHHHHHHTT---CEEEEEEC.S-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH...HHHHHHCTSSBGGG CS
   PolyA_pol   2 ylvGGaVRDlllgkepkDvDlatd.aapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekstesleeDlkrRDftiN 99 
                 +lvGGaVRD+ll+ ++kD D ++  a+pe +   l++ +++   +g++f +     +++++ +a++  ++ +      + ++   +le+Dl+rRD+tiN
  EHU02027.1   4 FLVGGAVRDALLKLPVKDKDWVVVgATPESM---LEQGYHQ---VGRDFPVFLHPDSREEYALARTERKNGKGYTGFTTWSAPDVTLEQDLQRRDLTIN 96 
                 8*******************76652777655...5555555...59999999999999988887766555555444455555556************** PP

                 S-EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol 100 alaynlnkgkvlDlfgGikdLkskvir 126
                 a+a + ++g+++D+++G++d+ ++++r
  EHU02027.1  97 AIARD-ENGTLYDPYQGQQDIADRLLR 122
                 ***99.99***************9987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.54
                 HHHHHTT---.CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEE CS
   PolyA_pol   8 VRDlllgkep.kDvDlatdaapeelakllrkkvkeallsgeefqtiavle 56 
                 +RDl l  ++ +D   +++  p+e   +l ++++  ++ ++ +q++ + e
  EHU02027.1 294 IRDLALLVTEfHDTMHTIEQLPSEAIVALFDRLDAWRKPERVHQLALCSE 343
                 67765444433777777777777766666666666444466666555544 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     2e-20   1.2e-16       1      61 [.     149     211 ..     149     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2e-20
  PolyA_pol_RNAbd   1 gFtIepeTaaairklap..lLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPela 61 
                      +F+I+ eT+a +r++ +  +L+++++eR++ E++K L+s +p+ +++ Lr++g+lk+lfPe++
       EHU02027.1 149 NFRIADETQALMRQMVEsgELADLTAERVWKETEKALSSHNPQVYFQVLRDCGALKVLFPEID 211
                      7************************************************************96 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.77   4.6e+03       5      17 ..     135     147 ..     134     160 .. 0.76
   2 !   39.9   0.1   6.9e-14   4.1e-10       4     121 ..     231     328 ..     228     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHH CS
          HD   5 sleVaklarrlae 17 
                  l+Va++a+r+a+
  EHU02027.1 135 VLRVARFAARFAH 147
                 6899999999986 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 6.9e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHTTCCHHHHHHHHHH CS
          HD   4 HsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld..ledvaklirehheswegkkrprg 100
                 H+l+ + l++ l e ++       +++a+L+HD+Gk +++       e++ ++++H   g+ ++ ++++rl+++  + d+a l+ e h+ + +      
  EHU02027.1 231 HTLMALTLSAALSEAID-------VRFATLFHDVGKALTPV------EKWPSHRGHGPAGVPLVAALCERLRVPnaIRDLALLVTEFHDTMHTI----- 311
                 *****************.......**************996......77999*******************999**999999999999999854..... PP

                 HHCCTSCHHHHHHHHHHHHHH CS
          HD 101 laerqlslearivklaDrlaa 121
                     ++ +++ iv+l Drl+a
  EHU02027.1 312 ----EQLPSEAIVALFDRLDA 328
                 ....9999999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3061.09
//
Query:       EHU02028.1  [L=272]
Description: undecaprenyl pyrophosphate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-85  287.3  17.9    1.4e-85  287.1  17.9    1.0  1  BacA      Bacitracin resistance protein BacA


Domain annotation for each model (and alignments):
>> BacA  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.1  17.9     8e-90   1.4e-85       1     255 [.      10     265 ..      10     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 287.1 bits;  conditional E-value: 8e-90
        BacA   1 aiilGivqGltefLPvSSsGhlilveellglekedlllfdvvihlGtllAvlvlfrkdilrllkgllkslkkkkkekeelrlllliivatipaailgll 99 
                 a+ilG+v+GltefLPvSS+Gh+i+v +llg+e +++++f+vvi+lG++lAv+v+f+++++ l+   + ++k++ + + +l  l++i++++ipa+++gl+
  EHU02028.1  10 AAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDKAETFEVVIQLGSILAVVVMFWRRLFGLIGIHFGEVKHEGTGTGRLT-LIHILLGMIPAVVIGLV 107
                 689****************************9777899*************************999999988764444444.447************** PP

        BacA 100 lkdlieellrsplvvaialivtglllllaeklrkkkkksl..edltlkdalliGlaQalAllPGvSRSGaTivaglllglsreaaaefSFllaiPailg 196
                 l+d+i++l+ +p+ v++al+v+gllll+ae l+ k+ ks+  +d+t+++a++iG++Q+lAl+PG+SRSGaTi++g+l+g+sr aa efSF+la+P+++g
  EHU02028.1 108 LHDQIKTLF-NPINVMYALVVGGLLLLAAEFLKPKQPKSVgvDDITYRQAFMIGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFILAVPMMMG 205
                 *****9876.9*******************6666555554337******************************************************** PP

        BacA 197 agllkllksaealtaselll.lvgfvvafvvallaikfllkllkkkklkvFaiYrivlGl 255
                 a+ l+l+ks + l+++++ + +vgf++afvva++aik++l+l+k+ ++  Fa+Yr++++ 
  EHU02028.1 206 ATGLDLYKSLGFLSMADFPMfAVGFITAFVVAMIAIKVFLELIKRISFVSFAVYRFIVAT 265
                 **********9999999999999**********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2060.74
//
Query:       EHU02029.1  [L=119]
Description: dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-32  110.0   0.1    9.7e-32  109.8   0.1    1.0  1  FolB      Dihydroneopterin aldolase


Domain annotation for each model (and alignments):
>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.1   5.4e-36   9.7e-32       1     111 []       4     113 ..       4     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 5.4e-36
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHSTESEEEEEEEETTSS CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefpvekvevrveKpnap 99 
                 ++i++l+v+++iGv+++E+ ++Q++v+d+e+++d ++aa+sdd++d ++Ya++++a+ +++++ +f l+E++ae+ia+ l+++f+   v+++v Kp a+
  EHU02029.1   4 VFIEQLTVFTTIGVYDWEQGIQQKLVIDIEMAWDNRQAAASDDVKDCLSYADVSEAILTHLTGGRFALVERVAEEIADLLMNRFNSPGVRIKVAKPGAV 102
                 69************************************************************99**********************************6 PP

                 STCESEEEEEEE CS
        FolB 100 igaadavgveit 111
                  ++a++vgv+i+
  EHU02029.1 103 -AQAAQVGVRIE 113
                 .559*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 851.86
//
Query:       EHU02030.1  [L=199]
Description: putative acylphosphate:glycerol-3-phosphate acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-51  173.6   8.2    3.9e-51  173.4   8.2    1.0  1  G3P_acyltransf  Glycerol-3-phosphate acyltransferase


Domain annotation for each model (and alignments):
>> G3P_acyltransf  Glycerol-3-phosphate acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   8.2   2.2e-55   3.9e-51       1     163 []      11     184 ..      11     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 2.2e-55
                     HHHHHHT--HHHHHHHH.TT--GGGSTTS--SHHHHHHHH-HHHHHHHHHHHHHHHH.HHHHHHHH........HHHHHHHHHHHS-GGCTT--- CS
  G3P_acyltransf   1 laYllGsipfayligkllkgiDirelgsgNaGatNvlrvlGkkagilvlllDllKgllavllalll........laglaavlGHifPvflkfkGG 87 
                     +aYl+Gsi++a+l++kl    D+r++gsgN+GatNvlr +Gk a++ vl++D+lKg+++v+la+ll        l+++aa+lGHi+Pvf++f+GG
      EHU02030.1  11 FAYLCGSISSAILVCKLAGLPDPRTHGSGNPGATNVLRLGGKAAAATVLVFDILKGMVPVWLAYLLhvpplylgLTAIAACLGHIYPVFFRFRGG 105
                     69**************96666*******************************************9999999888899****************** PP

                     -SHHHHHHHHHHHH...HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH.HH.....HH..HHHHHHHHHHHTHHHHHHH CS
  G3P_acyltransf  88 KGvatalGvllaldllllllallvfllvllltryvslaslvaalllpllllll...llllllllallvilrhrenikrl 163
                     KGvata+G+++ + + l+ l+ +++ll++ll+ y+sl+++v+al++p++++++   +++ + +l++l++lrh++ni+rl
      EHU02030.1 106 KGVATAFGAIAPIGWDLTGLMTGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFkpqFTFPVSMLSCLILLRHHDNIQRL 184
                     *************9977777778************************988888999888999****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1454.16
//
Query:       EHU02031.1  [L=337]
Description: putative peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.8e-102  342.0   0.0   3.2e-102  341.9   0.0    1.0  1  Peptidase_M22   Glycoprotease family
     0.0011   18.6   0.0     0.0072   16.0   0.0    1.9  2  Carbam_trans_N  Carbamoyltransferase N-terminus
  ------ inclusion threshold ------
      0.028   14.9   0.2       0.17   12.4   0.1    2.1  2  NBD_C           Nucleotide-binding C-terminal domain
       0.18   11.3   0.0       0.18   11.3   0.0    1.2  1  TrwC            TrwC relaxase


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.9   0.0  7.2e-106  3.2e-102       2     271 .]      24     307 ..      23     307 .. 0.97

  Alignments for each domain:
  == domain 1  score: 341.9 bits;  conditional E-value: 7.2e-106
                    CEXEEEEEEEEE....SSSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCC CS
  Peptidase_M22   2 vlanvvasqkelhakyGGvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaa 97 
                    ++an ++sq +lha+yGGvvPelasr H+++ +pli++al++a+l+++++da+a+t+gPGl+++L+vG++++++la+a+++P v+V+h+e+h+la+
     EHU02031.1  24 LVANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKQADLAPQQIDAVAYTAGPGLVGALLVGATIGRALAFAWKVPAVPVHHMEGHLLAP 119
                    6899******************************************************************************************** PP

                    HCTSEC.SSC.EEEEESSSTEEEEEECT.TEEEEEEEESSSEHHHHHHHHHHHHT..SSCCHHHHHHHCTC..S.......EET...TEEE.CHHH CS
  Peptidase_M22  98 rleeke.efP.vvllvsGghtqvylvke.gryeilgetlddaagealdkvarllglpypggpkieklakeg..kkiefprplkg...ldfsfsGlk 185
                    +le+++  fP v+llvsGghtq++ v++ g+y +lge++ddaagea+dk+a+llgl+ypggp ++k+a++g   +++fprp+++   ldfsfsGlk
     EHU02031.1 120 MLEDNPpAFPfVALLVSGGHTQLISVTGiGEYVLLGESIDDAAGEAFDKTAKLLGLDYPGGPMLSKMAQQGtaGRFTFPRPMTDrpgLDFSFSGLK 215
                    ***6566****************************************************************8777********************* PP

                    HHHHHHH..STT.....HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCHHHHH CS
  Peptidase_M22 186 tavlkel..eke.....vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaamiaw 271
                    t +++++  + +     ++d+a +f++avvd+l+ k++ral++++ k+lvi+GGv+an+ Lre+++ + +++g ++++ ++++ctdn+amia+
     EHU02031.1 216 TFAANTIrgH-DddaqtRADIARAFEDAVVDTLAIKCKRALDETGFKRLVIAGGVSANRTLREQMAVMMQKRGGEVFYARPEFCTDNGAMIAY 307
                    *******643.245789*************************************************99999********************97 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.087   3.9e+02      42      72 ..      53      83 ..       2      97 .. 0.77
   2 !   16.0   0.0   1.6e-06    0.0072     265     309 ..     228     276 ..     209     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.087
  Carbam_trans_N 42 lpklkaidyaleeagvelsdiDqivfdeidg 72
                     +++  i++al++a + +++iD +++ + +g
      EHU02031.1 53 RKTVPLIQAALKQADLAPQQIDAVAYTAGPG 83
                    44455699***************99988766 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.6e-06
  Carbam_trans_N 265 dedlaAsiqvflErlvvev....lnivyeklkirnLclaGGvalNiklN 309
                     d +  A i ++ E+ vv++     + + ++++ ++L +aGGv++N +l 
      EHU02031.1 228 DAQTRADIARAFEDAVVDTlaikCKRALDETGFKRLVIAGGVSANRTLR 276
                     34566777777777777775555777888999*************8765 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.22   9.7e+02      45      72 ..      58      83 ..      31     149 .. 0.63
   2 ?   12.4   0.1   3.8e-05      0.17      80     137 ..     227     287 ..     214     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.22
                HHHHHHHHHHCCTCCTSSEEEEEECTGH CS
       NBD_C 45 eieraleqaeeallaagkdvlvytsrep 72
                +i++al+qa+ a  + + d + yt+   
  EHU02031.1 58 LIQAALKQADLA-PQ-QIDAVAYTAGPG 83
                455666666555.34.566666665443 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.8e-05
                 --HHCCC-HHHH.HHHHHHHHHHHHHHHHHC.TECEEEEESHHHHHHHH.HHCT--EEEEE CS
       NBD_C  80 eslqaelglera.geriaaalaeiarrlver.gvrrlviaGGdtssavl.kaLgvkgleil 137
                 +++q +  ++ra  +++ ++la   +r++++ g++rlviaGG  ++ +l +++ v   + +
  EHU02031.1 227 DDAQTRADIARAfEDAVVDTLAIKCKRALDEtGFKRLVIAGGVSANRTLrEQMAVMMQKRG 287
                 34455555667777889999999999999665**********9999999777777665555 PP

>> TrwC  TrwC relaxase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05      0.18      72     120 ..     189     249 ..      46     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
        TrwC  72 e.........rerkavagfDltfsaPKSvSllalvg...dderraaieaahdaAvkaalal 120
                 +         r  + ++g+D+ fs  K+       g   d+++ra+i++a+++Av ++la+
  EHU02031.1 189 QgtagrftfpRPMTDRPGLDFSFSGLKTFAANTIRGhddDAQTRADIARAFEDAVVDTLAI 249
                 034444444456799*********99***9998865333467899*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2587.53
//
Query:       EHU02032.1  [L=71]
Description: 30S ribosomal subunit protein S21 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-22   77.1   6.5      6e-22   77.1   6.5    1.9  2  Ribosomal_S21  Ribosomal protein S21


Domain annotation for each model (and alignments):
>> Ribosomal_S21  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   6.5   3.3e-26     6e-22       2      54 ..       4      56 ..       3      57 .. 0.97
   2 ?    0.2   0.9     0.034   6.1e+02      43      53 ..      58      68 ..      56      70 .. 0.58

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 3.3e-26
  Ribosomal_S21  2 VvVkdgenierALkrfkrkveragvirevrrrryyekpsekrkrkkkearrrr 54
                   ++V+++e+++ AL+rfkr +e+agv++evrrr++yekp+ +rkr+k+ a +r+
     EHU02032.1  4 IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRH 56
                   89************************************************996 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.034
  Ribosomal_S21 43 rkrkkkearrr 53
                   +k +++ arr 
     EHU02032.1 58 KKLARENARRT 68
                   56666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 563.76
//
Query:       EHU02033.1  [L=581]
Description: DNA primase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-45  154.9   0.0    1.7e-45  154.2   0.0    1.3  1  Toprim_N        DNA primase catalytic core, N-terminal domain
    5.3e-41  138.4   0.1    1.2e-40  137.2   0.1    1.6  1  zf-CHC2         CHC2 zinc finger
    5.5e-35  120.7   0.6    1.1e-34  119.7   0.6    1.5  1  DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
      6e-15   55.4   0.0    1.2e-14   54.5   0.0    1.5  1  Toprim_2        Toprim-like
    1.9e-14   53.9   0.0    3.5e-14   53.0   0.0    1.4  1  Toprim_4        Toprim domain
    2.3e-12   46.9   0.7    7.1e-12   45.3   0.0    2.3  3  DnaB_bind       DnaB-helicase binding domain of primase
      2e-11   44.0   0.0    3.8e-11   43.1   0.0    1.5  1  Toprim          Toprim domain
    1.2e-08   35.2   0.0    4.1e-08   33.5   0.0    1.9  2  Toprim_3        Toprim domain


Domain annotation for each model (and alignments):
>> Toprim_N  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.0   7.4e-49   1.7e-45       1     127 [.     126     251 ..     126     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 7.4e-49
                 HHHHHHHCSCHHHHHHHHHCTT--HHHHHHCT-EEE-SHSCHHHHHHHHCT-HHHHHCCTTCEECSTTT-EEETTTTEEEEEEE-TTS-EEEEEEEESS CS
    Toprim_N   1 fykeelkseegekaleYLkkRglseetiekFqlGyapkswdnllkllkkkkvseeelleagllskkekgklydrFrnRimfPikdakgkvvgFgGRale 99 
                 fy+++l++++ ++a++YL++Rgls ++i++F +Gyap++wdn+lk + k+  ++e l+eag+l++++kg++ydrFr+R+mfPi+d++g+v+gFgGR+l 
  EHU02033.1 126 FYQQSLQQSSAQSARDYLQHRGLSADIINHFAIGYAPAGWDNVLKRFGKQPEDRESLMEAGMLVSNDKGRVYDRFRERVMFPIRDKRGRVIGFGGRVLG 224
                 89************************************************************************************************7 PP

                 S-SS.SEEE--SBTTB-CCC-EETHHHH CS
    Toprim_N 100 eeekaKYlNspetelFkKselLYgldea 127
                 ++++ KYlNspet++F+K+++LYgl+ea
  EHU02033.1 225 NDTP-KYLNSPETPVFHKGRQLYGLYEA 251
                 7777.********************987 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.1   5.5e-44   1.2e-40       3      96 ..       7     100 ..       5     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 5.5e-44
     zf-CHC2   3 eevidelkeridivdvveeyvkLkkkgkdyvalCPFHeektpsftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklgleleae 96 
                 + +i++l  r+div++++ +vkLkk+gk+y+a+CPFH+ektpsftv+ ekqfy+CfgCga+G+ai+Flm++++l+fve++e+la+++gl++++e
  EHU02033.1   7 RVFINDLLARTDIVELIDARVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDRLEFVESIEELATSHGLDVPYE 100
                 6789**************************************************************************************9987 PP

>> DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.6   4.9e-38   1.1e-34       1     124 []     451     574 ..     451     574 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 4.9e-38
  DnaG_DnaB_bind   1 vrealallLqhPelagelpdalaleafedpglallreliealaaepelntaaLlerlrgtpeeallaeLaveelqveeeeelerefadalarLqe 95 
                     +r ++all+q+P+la+ +p  ++l++ +++gl+l++el++++ ++p+l+t++Lle +rgt+++++l++Lav+++++ +e e e++f+d la +++
      EHU02033.1 451 MRVLVALLIQNPQLASLVPALDGLAESKIAGLPLFIELVKRCNENPGLTTGQLLELYRGTNFSQTLETLAVWNHMIVDE-ESEAVFQDSLASIYD 544
                     899**********************88****************************************************.7************** PP

  DnaG_DnaB_bind  96 qlverriaeLkaklr.qgLseeEkeelreL 124
                     +++e+r++ L+a++r +gLs +E++el++L
      EHU02033.1 545 AALEERLEFLIARERtHGLSTDERRELWTL 574
                     ****************************87 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   5.3e-18   1.2e-14       2      88 ..     263     348 ..     262     350 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 5.3e-18
    Toprim_2   2 vfEgaiDalSlaqlgikektnvvalgGtalteaalkllerypekkvvlalDnDkaGrkaakrlaellr...eagvrekirelpegkDwne 88 
                 v+Eg++D+ +laq+g +    +va++Gt+ t ++++ll r  +++v+ ++D D+aGr+aa r+ e +    ++g + +++ lp+g+D++ 
  EHU02033.1 263 VVEGYMDVVALAQYGVD---YAVASLGTSTTAEHIQLLFRS-TDNVICCYDGDRAGREAAWRALETALpymNDGRQLRFMFLPDGEDPDT 348
                 9***************8...*****************9999.889***************998876543445568899999999999986 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.6e-17   3.5e-14       2      78 ..     260     325 ..     259     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.6e-17
    Toprim_4   2 eiiiVEgyaDvlalekagiknvvavlggalspldgirpeklktenlveaekkvkevilaldgDaeGeataerlaell 78 
                 ++ +VEgy+Dv+al ++g+  +va+lg++  ++++i+   l++        ++++vi ++dgD +G ++a r++e+ 
  EHU02033.1 260 RLLVVEGYMDVVALAQYGVDYAVASLGTST-TAEHIQ--LLFR--------STDNVICCYDGDRAGREAAWRALETA 325
                 589***************************.******..5555........35*******************99944 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   9.2e+03      17      27 ..     352     362 ..     345     363 .. 0.78
   2 !   45.3   0.0   3.2e-15   7.1e-12       1      56 []     369     424 ..     369     424 .. 0.97
   3 ?   -2.3   0.0       2.4   5.4e+03       2      20 ..     552     569 ..     551     569 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.1
                 HHHHHHHHHHH CS
   DnaB_bind  17 pegkaravrea 27 
                  egka++ +++
  EHU02033.1 352 KEGKAAFEARM 362
                 49***997765 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 3.2e-15
                 HHHHHHHTTTT--TTSHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHT--HH CS
   DnaB_bind   1 seFlierllegydlstpegkaravrealpllaripdpieRdlYirrlAerlgidee 56 
                 s Fl+++ll ++dls+ +gkar+   alpl+ +ip + +R ++ ++l  +lgi ++
  EHU02033.1 369 SSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGETLRIYLRQELGNKLGILDD 424
                 57***************************************************875 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
                 HHHHHHTTTT--TTSHHHH CS
   DnaB_bind   2 eFlierllegydlstpegk 20 
                 eFli r +  + lst e +
  EHU02033.1 552 EFLIARER-THGLSTDERR 569
                 89999964.4888888876 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.7e-14   3.8e-11       2      99 ..     261     336 ..     260     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.7e-14
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEE CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkelakradeiilatDpDreGeaiawellevlkellenkigrve 99 
                 l +vEg++d+ ++a++   g   ++aslG+ ++ e+                  ++ l +  d++i ++D+Dr+G+++aw++le + ++ ++ +++++
  EHU02033.1 261 LLVVEGYMDVVALAQY---GVDYAVASLGTSTTAEH------------------IQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMND-GRQLR 336
                 89**************...9****************..................*****************************999999988.55555 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.9   6.4e+03      56      93 ..     132     173 ..     110     175 .. 0.59
   2 !   33.5   0.0   1.8e-11   4.1e-08       2      94 ..     261     355 ..     260     356 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
    Toprim_3  56 Greaaeklaerleaagieavllep......aegeDwndvlqkeG 93 
                 ++  a+ + + l+ +g++a ++        ++g  w++vl + G
  EHU02033.1 132 QQSSAQSARDYLQHRGLSADIINHfaigyaPAG--WDNVLKRFG 173
                 455556666666666666655555544433333..777766665 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 1.8e-11
    Toprim_3   2 liivEGietaLsileartgaaviAllsaanlkaiawpe.rgkrvviaaDnDaandGreaaeklaerlea...agieavllepaegeDwndvlqkeGa 94 
                 l++vEG+ ++ ++++  ++ av  l   +  + i++ +    +v+ + D+D a  Greaa+++ e +     +g++++++  ++geD + +++keG+
  EHU02033.1 261 LLVVEGYMDVVALAQYGVDYAVASLGTSTTAEHIQLLFrSTDNVICCYDGDRA--GREAAWRALETALPymnDGRQLRFMFLPDGEDPDTLVRKEGK 355
                 79***********88888886666666677779****87999***********..********9987644449***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4698.66
//
Query:       EHU02034.1  [L=45]
Description: hypothetical protein CKS_0529 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       133  (0.00741815); expected 358.6 (0.02)
Passed bias filter:                      105  (0.00585643); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 342.18
//
Query:       EHU02035.1  [L=609]
Description: RNA polymerase, sigma 70 (sigma D) factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-74  248.8   3.1    4.3e-74  248.8   3.1    2.8  3  Sigma70_ner     Sigma-70, non-essential region
    9.5e-31  105.7   4.9    9.5e-31  105.7   4.9    3.2  3  Sigma70_r1_1    Sigma-70 factor, region 1.1
    3.1e-29  100.9   6.7    3.8e-29  100.6   1.0    3.5  3  Sigma70_r3      Sigma-70 region 3
    7.4e-22   76.9   0.3    1.8e-21   75.7   0.3    1.7  1  Sigma70_r2      Sigma-70 region 2
      1e-18   66.6   0.8      1e-18   66.6   0.8    3.4  3  Sigma70_r4      Sigma-70, region 4
    2.5e-13   49.8   0.3    1.8e-12   47.0   0.1    2.5  2  Sigma70_r1_2    Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
      0.011   16.0   0.8      0.011   16.0   0.8    2.4  3  DNA_ligase_A_N  DNA ligase N terminus
       0.13   12.2   0.1        2.7    7.9   0.0    2.6  2  DUF2610         Domain of unknown function (DUF2610)
       0.16   12.2   4.1        1.2    9.4   0.1    3.1  2  Sun2_CC2        SUN2 coiled coil domain 2
       0.17   11.6   0.1       0.33   10.7   0.1    1.4  1  Eclosion        Eclosion hormone
       0.66    9.9   3.2         30    4.6   0.0    3.5  3  HTH_25          Helix-turn-helix domain
       0.83   10.2   5.2        6.8    7.2   0.4    3.4  3  FlgN            FlgN protein
        4.7    7.5  11.4       0.56   10.5   2.4    2.9  2  DUF4611         Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.8       0.1   1.4e+02      21      72 ..      40      92 ..      33     125 .. 0.64
   2 !  248.8   3.1   3.1e-77   4.3e-74       1     204 []     139     344 ..     139     344 .. 0.90
   3 ?   -3.4   0.1       5.5   7.6e+03     123     141 ..     570     588 ..     564     596 .. 0.50

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.1
  Sigma70_ner 21 rLrdiidGflD......eeeeeeeeeeeedeeeeeeeedddeeeseseaadeeelkee 72
                 +++dii+ ++D      ee++++++ + ++++++++e+     ++e++a+ ++  + e
   EHU02035.1 40 QIEDIIQMINDmgiqvvEEAPDADDLMLNENSSDTDED-----AAEAAAQVLSSVESE 92
                 68899997777998777666666665554444444432.....334444444444444 PP

  == domain 2  score: 248.8 bits;  conditional E-value: 3.1e-77
  Sigma70_ner   1 yPetiaellelydrveageirLrdiidGflD...eeeeeeeeeeeedeeeeeee.edddeeeseseaadeeelkeealekfeelreqyeklrkalkkk 94 
                  yPe+i++ll++ydrveage rL+d+i+Gf+D   ee+ +  +     +e +ee+ +dd ++++e++++d ++++e a+ekf++lr+qye++r ++k k
   EHU02035.1 139 YPEAITYLLDQYDRVEAGESRLSDLITGFVDpnaEEDLAPTATH-VGSELSEEDrNDD-DDDDEESDDDCSIDPELAREKFSDLRTQYETTRDVIKSK 234
                  9******************************8652222222222.2222233332333.35799********************************** PP

  Sigma70_ner  95 grkskkyekareelseefkefrLtpkqidrLveqlrslvervraqEreimrlcverakmprkdFiksFpgnetdlewlekllaagkpwsekleeveee 192
                  gr+++++ +++++ls++fk+frL+pkq+d+Lv+++r+++ervr+qEr im+lc+e +kmp+k+Fi+ F+gnet++ w++++la++kpwsekl +v+++
   EHU02035.1 235 GRSHAASVAEIQNLSDVFKQFRLVPKQFDYLVNNMREMMERVRTQERLIMKLCIEVCKMPKKNFITLFTGNETNESWFKAALAMNKPWSEKLLDVQDD 332
                  ************************************************************************************************** PP

  Sigma70_ner 193 iqelqqklaeie 204
                  + ++ qkla+ie
   EHU02035.1 333 VMRSLQKLAQIE 344
                  **********98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.5
  Sigma70_ner 123 drLveqlrslvervraqEr 141
                  ++  +q   + er+r+ E 
   EHU02035.1 570 EEVGKQFDVTRERIRQIEA 588
                  3333344444444444444 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   4.9   6.9e-34   9.5e-31       2      81 ..       4      80 ..       3      83 .. 0.91
   2 ?   -1.0   3.1       1.4   1.9e+03      66      79 ..     189     202 ..     168     210 .. 0.59
   3 ?   -1.1   0.0       1.5     2e+03      23      49 ..     246     272 ..     241     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 6.9e-34
                  HHHHHHHHHHHHHHHHSCEEHHHHHHHGCCSS--HHHHHHHHHHHHCCT-EEE-SS-.........S-SSSXXXXXXXXX CS
  Sigma70_r1_1  2 kqkaavkeLikkgKkkGyLtyeEindaLpddeldseqiediiemLedmgIdvveeaededellleeeaedaeeedeeaae 81
                  + ++++k L+++gK++GyLty+E+nd+Lp+d++ds+qiedii+m++dmgI+vveea+d+d+l+l+e+++d++   e+aae
    EHU02035.1  4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAPDADDLMLNENSSDTD---EDAAE 80
                  5799***********************************************************999999875...33333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                   ..S-SSSXXXXXXX CS
  Sigma70_r1_1  66 eeeaedaeeedeea 79 
                   ee+ +d++++dee+
    EHU02035.1 189 EEDRNDDDDDDEES 202
                   22222222233332 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.5
                   HHHHHHGCCSS--HHHHHHHHHHHHCC CS
  Sigma70_r1_1  23 eEindaLpddeldseqiediiemLedm 49 
                   + ++d+++++ l + q++ ++  + +m
    EHU02035.1 246 QNLSDVFKQFRLVPKQFDYLVNNMREM 272
                   67899*************999988877 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.2   1.6e+03      28      40 ..     345     357 ..     325     360 .. 0.79
   2 !  100.6   1.0   2.7e-32   3.8e-29       1      76 [.     454     529 ..     454     531 .. 0.96
   3 ?    0.8   0.0      0.38   5.3e+02      22      40 ..     568     586 ..     562     602 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
                 HHHTXXHHHHHHH CS
  Sigma70_r3  28 eeLglseekVrev 40 
                 ee+gl++e+V+++
  EHU02035.1 345 EETGLTIEQVKDI 357
                 7999******987 PP

  == domain 2  score: 100.6 bits;  conditional E-value: 2.7e-32
                 XHHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3   1 EklnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespee 76 
                 E++nk++r++r++ qe+grePtpeE+Ae++ ++e+k+r+vl++a+ep+S+++p+g++ed++lgd++ed+  e p +
  EHU02035.1 454 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 529
                 89*******************************************************************8887765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.38
                 XHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrev 40 
                 t eE+ ++ +++ e++r++
  EHU02035.1 568 TLEEVGKQFDVTRERIRQI 586
                 6789999999999999887 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.3   1.3e-24   1.8e-21       1      70 [.     375     444 ..     375     445 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +ve++l+lv ++a++++++g+++ Dl+Qe++++l++av++f+  rg++fs+++++++r+a+ + + +++r
  EHU02035.1 375 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 444
                 689**************************************************************99998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.55   7.6e+02      23      43 ..     340     360 ..     334     361 .. 0.84
   2 ?    2.1   0.1       0.1   1.4e+02       5      42 ..     459     495 ..     456     499 .. 0.73
   3 !   66.6   0.8   7.4e-22     1e-18       1      50 []     543     596 ..     543     596 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.55
                 HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4  23 leEIgerlgiSrerVrqiekr 43 
                 l++I e+ g++ e V+ i +r
  EHU02035.1 340 LAQIEEETGLTIEQVKDINRR 360
                 6777789999*****999887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiek 42 
                 L+   r+ l+    e+ T eE++er+ +++  +r  +k
  EHU02035.1 459 LNRISRQMLQEMGREP-TPEELAERMLMPEDKIRKVLK 495
                 5555555555555555.99***********99998776 PP

  == domain 3  score: 66.6 bits;  conditional E-value: 7.4e-22
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +La L++re +vl++rf      ++TleE+g++++++rer+rqie++AlrkLR+
  EHU02035.1 543 VLAGLTAREAKVLRMRFgidmNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 596
                 599**************************************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   1.3e-15   1.8e-12       1      31 [.      98     128 ..      98     130 .. 0.98
   2 ?   -1.3   0.0       1.6   2.3e+03       7      14 ..     467     474 ..     467     475 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.3e-15
                   HHHHHHHHHHHHSX--THHHHHHHHHHHHCC CS
  Sigma70_r1_2   1 DpvrlYLrEIGriPLLtaeEEveLAkrieaG 31 
                   Dpvr+Y+rE+G + LLt+e E+++Akrie+G
    EHU02035.1  98 DPVRMYMREMGTVELLTREGEIDIAKRIEDG 128
                   9****************************99 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
                   HHHHHHSX CS
  Sigma70_r1_2   7 LrEIGriP 14 
                   L+E+Gr P
    EHU02035.1 467 LQEMGREP 474
                   89****88 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.3   1.3e+04     105     120 ..      18      33 ..      10      55 .. 0.73
   2 ?   -2.7   0.1       4.6   6.3e+03      77     100 ..      70      89 ..      35     107 .. 0.65
   3 ?   16.0   0.8   8.3e-06     0.011      56     143 ..     275     383 ..     216     403 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.3
                     -----BHHHHHHHHHH CS
  DNA_ligase_A_N 105 kkspltieevnelLdk 120
                     +++ lt +evn++L +
      EHU02035.1  18 EQGYLTYAEVNDHLPE 33 
                     5666888888888864 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.6
                     HHHHHHHHHHS-HHHHHHHHHCCH CS
  DNA_ligase_A_N  77 kkikdalakvgDlgevaeevlskr 100
                     + + d     +D +e+a++vls+ 
      EHU02035.1  70 N-SSDT---DEDAAEAAAQVLSSV 89 
                     2.2222...368888888888755 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 8.3e-06
                     -----HHHHHHHHHHHHT--HHHHHHH.....................HHHHS-HHHHHHHHHCCHHHH------BHHHHHHHHHHHH....H-S CS
  DNA_ligase_A_N  56 eygigesllakalaealglskkkikda.....................lakvgDlgevaeevlskrstlakkspltieevnelLdkla....aag 125
                     +   +e+l++k+++e+++++kk+  +                      ++k+ D+ + ++++l+k  ++++++ ltie+v +  ++++    +  
      EHU02035.1 275 RVRTQERLIMKLCIEVCKMPKKNFITLftgnetneswfkaalamnkpwSEKLLDVQDDVMRSLQKLAQIEEETGLTIEQVKDINRRMSigeaK-- 367
                     55568***************996666689999***************9889***********************************9844331.. PP

                     TTHHHHHHHHHHHHHHHS CS
  DNA_ligase_A_N 126 kgsedekkkilkkllkra 143
                        + +kk++++  l+ +
      EHU02035.1 368 --ARRAKKEMVEANLRLV 383
                     ..3444444444444443 PP

>> DUF2610  Domain of unknown function (DUF2610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.002       2.7      45      71 ..     328     354 ..     299     357 .. 0.91
   2 ?    0.9   0.0       0.3   4.1e+02      40      63 ..     442     465 ..     438     468 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
     DUF2610  45 qvpeevveslskLfklakennvsfeeL 71 
                 +v ++v+ sl+kL ++ +e ++++e+ 
  EHU02035.1 328 DVQDDVMRSLQKLAQIEEETGLTIEQV 354
                 6899*******************9985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.3
     DUF2610  40 keRggqvpeevveslskLfklake 63 
                 ++R  ++p +++e+++kL +++++
  EHU02035.1 442 QARTIRIPVHMIETINKLNRISRQ 465
                 678999**************9975 PP

>> Sun2_CC2  SUN2 coiled coil domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00088       1.2      24      51 ..     330     357 ..     322     360 .. 0.84
   2 ?    2.9   0.1     0.093   1.3e+02      30      57 ..     564     592 ..     534     593 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00088
    Sun2_CC2  24 ardaaasvgvaLqkeGvtgvTeeqVhrI 51 
                 + d+ +s+++  q e  tg+T eqV+ I
  EHU02035.1 330 QDDVMRSLQKLAQIEEETGLTIEQVKDI 357
                 34599999999***************99 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.093
    Sun2_CC2  30 svgvaLqkeG.vtgvTeeqVhrIVnrALk 57 
                   + +L++ G    vT+e +++I  +AL+
  EHU02035.1 564 NTDHTLEEVGkQFDVTRERIRQIEAKALR 592
                 56677777662468*************98 PP

>> Eclosion  Eclosion hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00024      0.33       9      39 ..     283     313 ..     278     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
    Eclosion   9 ileiClenCaqCkkmfGefFeGqlCaeaClk 39 
                 i+++C+e C+  kk f + F G+  +e+ +k
  EHU02035.1 283 IMKLCIEVCKMPKKNFITLFTGNETNESWFK 313
                 689*********************9999877 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.86   1.2e+03      14      29 ..     341     356 ..     338     361 .. 0.59
   2 ?    3.4   0.1     0.052        72       6      30 ..     432     456 ..     430     460 .. 0.89
   3 ?    4.6   0.0     0.022        30      12      41 ..     568     597 ..     564     608 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.86
                 HHHHHHSS--HHHHHH CS
      HTH_25  14 eevaketkIrkdylea 29 
                  ++++et +  ++++ 
  EHU02035.1 341 AQIEEETGLTIEQVKD 356
                 5555555555555554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.052
                 HHTTT--HHHHHHHSS--HHHHHHH CS
      HTH_25   6 RearglsleevaketkIrkdyleal 30 
                 R+a   s+ + a+ ++I+++++e +
  EHU02035.1 432 RQAITRSIADQARTIRIPVHMIETI 456
                 7788889***************987 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.022
                 -HHHHHHHSS--HHHHHHHHCT--TTSS-H CS
      HTH_25  12 sleevaketkIrkdylealEeddfdalpep 41 
                 +leev k+  +  + ++++E+  + +l +p
  EHU02035.1 568 TLEEVGKQFDVTRERIRQIEAKALRKLRHP 597
                 89**********************999977 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4    0.0049       6.8      72     124 ..     307     361 ..     256     362 .. 0.71
   2 ?    3.0   0.1       0.1   1.4e+02      51      79 ..     453     481 ..     448     498 .. 0.77
   3 ?   -1.6   0.0       2.5   3.4e+03      18      60 ..     541     564 ..     533     602 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0049
                 SCHHHHHHHHCT..TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH CS
        FlgN  72 aeeatlsellak..eedeelkelwqelkelleelkelnelNgrlieqslefnqrl 124
                 ++e   +++la+  ++ e+l ++++++   l++l ++ e  g +ieq  + n+r+
  EHU02035.1 307 TNESWFKAALAMnkPWSEKLLDVQDDVMRSLQKLAQIEEETGLTIEQVKDINRRM 361
                 33444455555588**************************************997 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHTT--SCHHHHHH CS
        FlgN  51 lekleqleqkrakllaelglsaeeatlse 79 
                 +e++++l +  +++l+e+g ++ +++l e
  EHU02035.1 453 IETINKLNRISRQMLQEMGREPTPEELAE 481
                 899******************54444433 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FlgN  18 leeLlelleeEteaLkagdieaLeelleekqellekleqleqk 60 
                 ++ L+ l+++E+++L+ +                     ++ +
  EHU02035.1 541 HDVLAGLTAREAKVLRMR-------------------FGIDMN 564
                 444444444444444433...................222222 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   1.7      0.41   5.6e+02      49      81 ..      54      86 ..      24      95 .. 0.78
   2 ?   10.5   2.4   0.00041      0.56      30      76 ..     152     204 ..     126     216 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.41
     DUF4611 49 lveqeaqddvaaagdeeeegededdeeeeknik 81
                +v +ea d  +   +e++++ ded++e+  ++ 
  EHU02035.1 54 QVVEEAPDADDLMLNENSSDTDEDAAEAAAQVL 86
                566677777777888999999999999887765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00041
     DUF4611  30 sllsgvaqlreevsellstlveqe......aqddvaaagdeeeegededdeee 76 
                  + +g ++l ++++ + ++  e++        ++  +++d +++++d++++++
  EHU02035.1 152 RVEAGESRLSDLITGFVDPNAEEDlaptatHVGSELSEEDRNDDDDDDEESDD 204
                 5668889999*********9999977643222333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1211  (0.0675442); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4829.48
//
Query:       EHU02036.1  [L=171]
Description: G/U mismatch-specific DNA glycosylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-23   81.0   0.0    9.5e-23   80.9   0.0    1.0  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   5.3e-27   9.5e-23       4     154 ..      10     167 ..       7     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 5.3e-27
                 -CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHG........CTEEEEESSS....S.ECGCTTCCCCTCCHHHHHHHHHHHHS CS
         UDG   4 gppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdlese........qgvyitnvvkcrppg.nrdtptsaeikacaplleeeiellkp 93 
                   pd++v+++G +Pg   + tg +F +++gn+++k+++ ag++ ++ ++         g++it +v  rp + + +++ s+e++ + + l++++  ++p
  EHU02036.1  10 IAPDLNVLFCGINPGQSTAHTGYHF-AHPGNRFWKVIHLAGFTVQQLKPeeeqrlleTGCGITMLVE-RP-TiQANELASDELRDGGQRLMDKVLCYQP 105
                 5799*********************.******************99999******************.55.424489********************** PP

                 SEEEEESHHHHHH..HHHHSCESCCCSCT.........SEEEEES-SSTTTTTTTTSHHHHHHHHHHHH CS
         UDG  94 rlivllGktaakallgeklgklrgklleak........irvlplphPsplnrnffksnpelkaeawedL 154
                  ++ +lGk+a+k+        +r++ +e+         ++v++lp+Ps+lnr   ++  +l ++ +e+L
  EHU02036.1 106 AALAILGKDAFKRA-------FRQSKVEWGeqpiymgkTQVWVLPNPSGLNRASLEEMVALYRQMYEAL 167
                 *************4.......56666666334456667***************7777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1370.81
//
Query:       EHU02037.1  [L=133]
Description: putative periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   41.3   0.0    2.4e-10   40.8   0.0    1.2  1  DUF3828   Protein of unknown function (DUF3828)


Domain annotation for each model (and alignments):
>> DUF3828  Protein of unknown function (DUF3828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.3e-14   2.4e-10       1     101 [.      12     112 ..      12     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.3e-14
     DUF3828   1 dpeqtvkqfYqqyv.qtfteivkqeatamreyiskellkrlksakiqqegeqevldaDpfsyaQda.eddwvasvkvrpa.kadsgkavvdvslgqqee 96 
                 +pe++v+qfY++y+  ++++++++++++m ++++k ++ r+ ++ +     + ++   +f+++Qd+  ++w++s+ +  a   ++g +vv vs g++++
  EHU02037.1  12 NPETFVRQFYEWYIgADKSATPAENSPGMYRFVAKGTADRIREEIRRGSL-PDNV--AYFTKVQDYdPAEWLSSMDIHRAlWLNNGVSVVAVSFGKKDK 107
                 599***********988989**********************55554444.4444..49*******55579*****98872579999********9999 PP

     DUF3828  97 eavel 101
                 + ++l
  EHU02037.1 108 TDIVL 112
                 88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1057.50
//
Query:       EHU02038.1  [L=56]
Description: growth inhibitor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 422.14
//
Query:       EHU02039.1  [L=349]
Description: phage major capsid protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.2e-103  345.7   0.0   2.5e-103  345.5   0.0    1.0  1  Phage_cap_P2  Phage major capsid protein, P2 family


Domain annotation for each model (and alignments):
>> Phage_cap_P2  Phage major capsid protein, P2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.5   0.0  1.4e-107  2.5e-103      10     326 .]      15     340 ..       8     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: 345.5 bits;  conditional E-value: 1.4e-107
  Phage_cap_P2  10 aklngveseev..sekFsvepsveqkLeekiqessefLkkInvvgVdeqkGekvglgvsgliasrtdtskkeRktkdvtkldsnkYelektnsdtai 104
                    ++ng e++++  +++Fsveps+ q+  +++qess++L +In+v Vdeq+ ek+glgv ++ a + + s+++R+++ v +lds +Y++e++n+dt+i
    EHU02039.1  15 HQQNGSEEADAcpAQHFSVEPSASQRAVSRMQESSALLGRINIVAVDEQQSEKLGLGVGSPLAATGTASQARREPRPVVTLDSDDYRCEQVNTDTFI 111
                   46667776666679****************************************************999**************************** PP

  Phage_cap_P2 105 kYakldawakfkdfqkrlreaiakrialdrimiGfnGtsvaattdraanpllqDVnkGWlqklreeapervltegkkes...kivigeggdyknLDa 198
                   ++++ld+wa    f++r++++i+ r al rim+GfnG++ aa++d ++npllqDVn GWlq++r +a++r+++ ++ +      +i + gdy ++D+
    EHU02039.1 112 SFSQLDSWACLDGFEERIESQITIRKALHRIMTGFNGVTHAAKSDIDKNPLLQDVNTGWLQHMRSNASQRIISGVSVSRrdaDNRIVSPGDYGTIDS 208
                   *************************************************************************9988878885555569******** PP

  Phage_cap_P2 199 lvfdavnslideeyredtdLVvlvGrdLladkkfklln....ktntekeklaaqliisqkrigglpavrvPffPakallvTsldNLsiYtqegsrrr 291
                   l ++a  sl+d++y ++++LVv++Grd+l++k+f+l+n       +++e l   ++ +++++gglpa+ vPffPa+a l+T+++NLs+Y+q+++ rr
    EHU02039.1 209 LLMEAYRSLLDPWYVDSEELVVICGRDMLTRKYFPLINglgtVPAPNREILSWMVLDKNQTLGGLPAFGVPFFPADAALITTFENLSMYWQRNTDRR 305
                   ***************************************99556667777777778889************************************** PP

  Phage_cap_P2 292 kiednpkrdrienyessnegYvvedyelaalieni 326
                    + d++ ++r++ y s+ne+Yvvedy++a+l+e+i
    EHU02039.1 306 LVADESPYNRVAIYDSRNEAYVVEDYGCACLVEGI 340
                   *********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2648.29
//
Query:       EHU02040.1  [L=86]
Description: hypothetical protein CKS_0536 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 666.34
//
Query:       EHU02041.1  [L=219]
Description: hypothetical protein CKS_0537 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.032   14.3   2.2      0.049   13.7   2.2    1.2  1  YscO-like   YscO-like protein
       0.11   12.7   0.1        1.5    9.1   0.0    2.3  2  DUF948      Bacterial protein of unknown function (DUF948)
       0.25   10.7   4.8      0.058   12.8   0.9    1.9  2  NolV        Nodulation protein NolV


Domain annotation for each model (and alignments):
>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.2   8.1e-06     0.049      15      91 ..      22      97 ..      20     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.1e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like 15 rrveeAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaKvaqlreeldkGttsdkikkmkryikvvkeelkqeek 91
                r+++e  ++++++ + L + +++l++ e+ rd++k +  +  +q    +  G ++   + +++ ++v+++ + q+e+
  EHU02041.1 22 RQLDETRQAFEQAWQILTEAEKTLHNFEASRDRAKSKSAEASRQWEAAMTAGKGIVT-EEAEALENVIAQAERQVER 97
                6789************************************************99854.6677777777777777664 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00025       1.5      38      83 ..      30      75 ..      19      80 .. 0.86
   2 ?    1.3   0.0     0.071   4.2e+02      46      76 ..      77     104 ..      74     107 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
      DUF948 38 lekqvdpilkevedllakvnelledvneklekvdplteavadlges 83
                  +q+ +il+e+e++l++ ++  +  ++k+++  +  ea+ ++g+ 
  EHU02041.1 30 AFEQAWQILTEAEKTLHNFEASRDRAKSKSAEASRQWEAAMTAGKG 75
                4478999****************************99999999875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.071
      DUF948  46 lkevedllakvnelledvneklekvdpltea 76 
                 ++e +++l++v +   + ++++e++ p++ea
  EHU02041.1  77 VTEEAEALENVIA---QAERQVERLGPMIEA 104
                 4555555555555...888899999998876 PP

>> NolV  Nodulation protein NolV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.8     0.022   1.3e+02      27      84 ..      36      95 ..      14      97 .. 0.76
   2 ?   12.8   0.9   9.8e-06     0.058       6      48 ..      87     129 ..      81     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.022
        NolV 27 eiwddaikalaaaerhlqrvrsw.arlayerelargraeglka.gaeemaaliaqavael 84
                +i  +a k+l   e  ++r +s  a ++ + e a    +g+ +  ae + ++iaqa  ++
  EHU02041.1 36 QILTEAEKTLHNFEASRDRAKSKsAEASRQWEAAMTAGKGIVTeEAEALENVIAQAERQV 95
                566778888888888888877752566778899988888875427899999999997665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.8e-06
        NolV   6 lvapaapkiralgplipaaeleiwddaikalaaaerhlqrvrs 48 
                 ++a a  ++  lgp+i a  le+ d  + a  aa  h    r 
  EHU02041.1  87 VIAQAERQVERLGPMIEAQALEVLDYRVSASRAAHAHHHTHRQ 129
                 57889999**********************9999988776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1696.79
//
Query:       EHU02042.1  [L=100]
Description: hypothetical protein CKS_0539 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 787.99
//
Query:       EHU02043.1  [L=326]
Description: site-specific recombinase, phage integrase family [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-20   71.2   0.8    4.1e-17   62.5   0.8    2.5  1  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
      0.065   13.5   0.1       0.22   11.8   0.1    1.9  1  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.8   4.5e-21   4.1e-17       2     170 ..     164     307 ..     163     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 4.5e-21
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      +l  +e+ +ll++++      d+ ++ l+++tG+R sE+ +L+ +++ ++ +v ++   ++K++k+r+vp+s     ++++ ++++     +s 
       EHU02043.1 164 YLSRQEIAALLQTMNG----DDRRVALLCLSTGARWSEASTLHAGQV-INGRVTFL---KTKNGKKRTVPVSP----AVEREIKTC-----ESG 240
                      68899***********....**************************9.89999999...99*********985....556666666.....333 PP

                      BSSBETTSSB--HHHHHHHHHHHHHHCT-S.SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  96 llfaskrgkplsrqtvrkafkraveeagie.kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                       lf           +++++ ++++e          +H lRh+fa++ + +g ++ ++q+++GH+s++ t+ Y+h+a
       EHU02043.1 241 PLFSV---------DYERFCRKLREVKPDLpRGQATHVLRHTFASWFMMNGGNILALQRIMGHASVRQTMAYAHLA 307
                      34444.........4555555555542222355779**************************************86 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.5e-05      0.22      23      82 ..      83     139 ..      73     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
                      HHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHH CS
  Phage_int_SAM_1  23 rrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvr 82 
                      rr L++ +++l       +++l++++++a    ++++g sa++++r l  l + f+ l+r
       EHU02043.1  83 RRHLQKTVRHLGN---LPVNRLNRKMLAAHRSDRLAAGISAATINRDLYRLSGVFSTLIR 139
                      4555555555555...*******************************9999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 2917.57
//
Query:       EHU02044.1  [L=117]
Description: hypothetical protein CKS_0541 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.13   12.3   1.6       0.18   11.9   1.6    1.3  1  Zn_Tnp_IS91  Transposase zinc-binding domain


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.6     1e-05      0.18      39      72 ..      84     117 .]      68     117 .] 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1e-05
  Zn_Tnp_IS91  39 ryeCeeCghekivyfsCksrhCpsCqkkateewl 72 
                  + +C+ Cg     ++  + r C +C + + +ewl
   EHU02044.1  84 ERCCPWCGVVVDACNPVQGRGCYRCTAAEDDEWL 117
                  668******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1006.14
//
Query:       EHU02045.1  [L=586]
Description: phage replication gene A protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-116  388.7   0.3   2.2e-116  388.4   0.3    1.1  1  Phage_GPA  Bacteriophage replication gene A protein (GPA)


Domain annotation for each model (and alignments):
>> Phage_GPA  Bacteriophage replication gene A protein (GPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.4   0.3  1.2e-120  2.2e-116       3     318 .]      84     399 ..      82     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: 388.4 bits;  conditional E-value: 1.2e-120
   Phage_GPA   3 lkklakeiakalestleklsdgkkakeeedteeelakayevlaqlalsftikaPky...rkkkitaeelesaiaRltcekwwlrklkkvrkrwreelai 98 
                 ++ la +ia+ + + l +l     + ++ +   ++ ++y  +a ++++++ ++P +     + ++ + +++ai+R+  ekww+ +l+++ + wre+l+i
  EHU02045.1  84 VDLLAGDIASFIHAELVQLHA---SISDRTDYRYVHHLYTTAAIITRELGQTPPLWetvSTRFFCPDDVTAAILRMQAEKWWKGQLRRLSAFWREHLHI 179
                 566777788888777777776...6777778899**********************998888899********************************** PP

   Phage_GPA  99 avgeVskkaspyaskealkeireqkrknleflkslelededgetidLeevvkksvsNPaiRraelmvrlrgleriaeekGdvavFlTlTapskyhatyk 197
                 a+++Vskk+spyas  a+ e+req+r++++fl+s++lede+g++i+L+e++++sv+NPaiRraelm r+rg+e ++++ G  a F+TlTaps+yhat +
  EHU02045.1 180 ALANVSKKRSPYASPMAVAEWREQRRRTRDFLQSMDLEDEEGNRISLIEKYDGSVANPAIRRAELMTRIRGFETLCQNMGFRAEFYTLTAPSRYHATLQ 278
                 *************************************************************************************************** PP

   Phage_GPA 198 ngkgnskwngatprdaqdYlvkvwavlraelnkaeirvyGvrvaephhDGtlHwHlllfvrpederqinsllrtyAlredrdelsrkgakkvrfkaeki 296
                  g++n kwnga+p d+q+Yl+++w+++ra+l++++i ++G+rvaephhDGt+HwH+l+f+rped +++ ++lr+yA ++d del+++ a+k+rf+ae+i
  EHU02045.1 279 TGHRNAKWNGASPADTQRYLCTLWQRVRAKLHRNNISIFGLRVAEPHHDGTPHWHMLMFMRPEDVSRVSEILRDYACQQDSDELNSARARKARFHAEAI 377
                 *************************************************************************************************** PP

   Phage_GPA 297 datkgsAvgYvAkYisKniDgr 318
                 d+ kgsA+gY+AkY++KniDg+
  EHU02045.1 378 DPAKGSATGYIAKYVAKNIDGY 399
                 ********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4629.74
//
Query:       EHU02046.1  [L=59]
Description: hypothetical protein CKS_0543 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 492.16
//
Query:       EHU02047.1  [L=75]
Description: putative zinc-finger containing protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-11   41.9   6.7    1.2e-10   41.2   6.7    1.3  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
    3.8e-05   23.6   1.8    5.4e-05   23.1   1.8    1.2  1  DZR           Double zinc ribbon
      0.008   16.0   0.5      0.011   15.6   0.5    1.3  1  C1_1          Phorbol esters/diacylglycerol binding domain (C


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   6.7     2e-14   1.2e-10       4      32 ..      33      61 ..      30      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2e-14
  zf-dskA_traR  4 gsCeeCGEpIpeaRlralPgarlCveCqe 32
                  ++CeeC  pIpeaR+ra+ g+++C++Cqe
    EHU02047.1 33 SFCEECDAPIPEARRRAVQGVTRCLSCQE 61
                  56**************************8 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.8   9.1e-09   5.4e-05       7      43 ..      27      68 ..      24      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 9.1e-09
         DZR  7 elppdarfCseCgtklkavaa.....edrCpsCgekvdpear 43
                ++  +a fC+eC ++++++ +      +rC sC+e +++++r
  EHU02047.1 27 PVAISASFCEECDAPIPEARRravqgVTRCLSCQEVCELRTR 68
                6677899*********977779**************998876 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   1.8e-06     0.011      10      38 ..      31      63 ..      18      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-06
                S--B-TTT-SB-...-SSSS-EE.EETTT--EE CS
        C1_1 10 qptfCkhCgefl...wgkekqgl.kCswCkllv 38
                + +fC++C+ ++   ++ + qg+ +C  C++++
  EHU02047.1 31 SASFCEECDAPIpeaRRRAVQGVtRCLSCQEVC 63
                678*********9865566666538*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 716.51
//
Query:       EHU02048.1  [L=72]
Description: hypothetical protein CKS_0545 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-18   64.6   3.7    6.5e-18   64.4   3.7    1.1  1  DUF2732   Protein of unknown function (DUF2732)
  ------ inclusion threshold ------
      0.046   13.3   0.2      0.047   13.3   0.2    1.0  1  SCHIP-1   Schwannomin-interacting protein 1
      0.068   13.7   0.1      0.077   13.5   0.1    1.1  1  HTH_27    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> DUF2732  Protein of unknown function (DUF2732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   3.7   1.1e-21   6.5e-18       1      73 [.       1      70 [.       1      71 [. 0.89

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.1e-21
     DUF2732  1 mrNietrklkadse.alavlLnkArseerkdrallvssRLnaLaihiqqkelsavEaaeLLrkEaerfeneaqe 73
                m N+et +l+ ++   l+ lL     +erk+ al+v+ RLn +a+hi ++ l+ +EaaeLLr Eaer+ene+ +
  EHU02048.1  1 MMNSETHSLNDATTfTLNKLL----DNERKACALAVARRLNVMAAHITRQTLNGIEAAELLRNEAERYENESGA 70
                899999997766666666666....68********************************************965 PP

>> SCHIP-1  Schwannomin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   7.9e-06     0.047      98     150 ..       8      60 ..       1      68 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-06
     SCHIP-1  98 seddeadffarqarLqeear.vaLaqakelarmqveverqkqkkspvadlires 150
                 s  ++a  f+  + L  e +  aLa a+ l  m  ++ rq  +    a+l+r+ 
  EHU02048.1   8 S-LNDATTFTLNKLLDNERKaCALAVARRLNVMAAHITRQTLNGIEAAELLRNE 60 
                 3.344677899999999987469*******************999999999876 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.3e-05     0.077       7      49 ..      15      60 ..       9      70 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
      HTH_27  7 lvLhlirhrrrrkkladlcgrlnvedshis.yslkkLtekGLv..e 49
                ++L+ +  ++r++ + ++++rlnv ++hi    l+  ++++L+  e
  EHU02048.1 15 FTLNKLLDNERKACALAVARRLNVMAAHITrQTLNGIEAAELLrnE 60
                56777774555555589**************************322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 616.03
//
Query:       EHU02049.1  [L=122]
Description: hypothetical protein CKS_0546 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 986.97
//
Query:       EHU02050.1  [L=194]
Description: hypothetical protein CKS_0547 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-31  106.6   0.0      1e-30  106.0   0.0    1.2  1  Phage_CI_C     Bacteriophage CI repressor C-terminal domain
      7e-25   86.9   0.0      1e-24   86.4   0.0    1.3  1  Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix do
  ------ inclusion threshold ------
      0.063   13.3   0.0        1.2    9.2   0.0    2.3  2  HTH_19         Helix-turn-helix domain
       0.12   12.1   0.0       0.21   11.4   0.0    1.4  1  HTH_psq        helix-turn-helix, Psq domain
       0.17   12.1   0.0       0.29   11.4   0.0    1.3  1  Phage_CII      Bacteriophage CII protein


Domain annotation for each model (and alignments):
>> Phage_CI_C  Bacteriophage CI repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0   2.9e-34     1e-30       5     101 ..      91     190 ..      88     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 2.9e-34
  Phage_CI_C   5 kvklvngkleesglvlldkkllkkelkep...lvieeekklylvdkkeadvsdGkwLvdieGrlsirelariPvkklrvsgdevsfecklddikvlgrv 100
                 ++kl+ gk+e++g+v+ldk+l +   +ep    ++ +e++ y++d++++d++dG wLv+ieG+ s+r l+riPv+k++vsg +v f+c++ddik++grv
  EHU02050.1  91 RKKLISGKIEDAGYVMLDKALYAPLKQEPrnaFLLLAETTQYIIDTDFEDMHDGVWLVEIEGTASVRTLTRIPVRKVHVSGIGVAFDCGIDDIKLIGRV 189
                 689*****************9877777777769999*************************************************************** PP

  Phage_CI_C 101 v 101
                 v
  EHU02050.1 190 V 190
                 8 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   2.8e-28     1e-24       2      64 ..      16      78 ..      15      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 2.8e-28
                   HHHHHHHHHT-SSCHHHHCCTT--HHHHHHHHHSSS--HHHHHHHHHHH---HHHHHC-SS-S CS
  Phage_CI_repr  2 vleRlmsaygvkmqkeLAdlLgiakssvstwvrRdffPgdvvvtcaletdtsLewLatGkgqm 64
                   +l+R+++ayg+ m+ +LAd+Lgia ss+s +++Rd fP+d v++c  et+++L+wL tGkg+ 
     EHU02050.1 16 ALDRVVDAYGFTMKMQLADHLGIAASSLSARYKRDVFPSDIVLQCVMETGADLQWLITGKGSK 78
                   799**********************************************************75 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00035       1.2      17      64 ..      31      76 ..      19      77 .. 0.91
   2 ?    1.6   0.0     0.077   2.8e+02      31      55 ..      93     118 ..      92     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00035
      HTH_19 17 elaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllqged 64
                +la++lgi  s++sa    k+dv++++ +l+ + + g dl++l++g++
  EHU02050.1 31 QLADHLGIAASSLSARY--KRDVFPSDIVLQCVMETGADLQWLITGKG 76
                799999**999999988..899***********************987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.077
      HTH_19  31 aiEngkkdvpsaell.lkiaealgid 55 
                 ++++gk++++++ +l ++++  l+++
  EHU02050.1  93 KLISGKIEDAGYVMLdKALYAPLKQE 118
                 6889***********66666667766 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.7e-05      0.21      21      40 ..      31      50 ..      14      54 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.7e-05
     HTH_psq 21 kAArkYgiPrsTLwrrkrgk 40
                ++A++ gi++s+L+ r+++ 
  EHU02050.1 31 QLADHLGIAASSLSARYKRD 50
                89************888875 PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-05      0.29      27      62 ..      30      66 ..      17      72 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
                HHHHHHHTSSTTTHH.HHHHHHHHHHHHHHHHTTTTH CS
   Phage_CII 27 rkvaeaiGvdeskis.rwktDwipkasvLlavlefGv 62
                 ++a+ +G+  s +s r+k+D  p   vL  v+e G 
  EHU02050.1 30 MQLADHLGIAASSLSaRYKRDVFPSDIVLQCVMETGA 66
                579********999879****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1540.37
//
Query:       EHU02051.1  [L=514]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-46  156.4  18.3    5.8e-46  156.4  18.3    3.4  4  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    4.9e-14   52.3   1.0    4.9e-14   52.3   1.0    2.8  2  4HB_MCP_1      Four helix bundle sensory module for signal tr
     0.0015   19.0   2.6     0.0015   19.0   2.6    2.6  3  Fez1           Fez1
  ------ inclusion threshold ------
      0.051   13.4   1.2       0.14   12.0   1.2    1.9  1  DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
       0.15   12.1   7.1      0.093   12.8   1.5    3.1  2  COG2           COG (conserved oligomeric Golgi) complex compo
       0.33   11.4   4.2       0.13   12.7   0.5    2.3  2  DUF4200        Domain of unknown function (DUF4200)
        3.3    6.6   8.2        0.3   10.0   3.4    1.7  2  IFT57          Intra-flagellar transport protein 57


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.3   3.2e+03     117     140 ..     100     123 ..      60     149 .. 0.64
   2 ?   -1.0   0.1      0.51   1.3e+03     108     125 ..     168     185 ..     132     195 .. 0.56
   3 !    9.2   4.5   0.00037      0.95      97     170 ..     238     311 ..     219     319 .. 0.79
   4 !  156.4  18.3   2.2e-49   5.8e-46       2     172 .]     325     481 ..     324     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHCCHHHHHHHHHHHH CS
   MCPsignal 117 eegselveetgealkeiveavaev 140
                  ++ + + +++ea+ +iv++ + v
  EHU02051.1 100 MVARDSTPKAREAFDKIVSSEGPV 123
                 344566677778888887766555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.51
                 ..HHHHHHHHHHHHHHHH CS
   MCPsignal 108 sleetrqrveegselvee 125
                  +e++++ ve +s+ v++
  EHU02051.1 168 QMEDSEKSVEITSQNVRR 185
                 344444444444444444 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00037
                 .............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  97 eiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                  ++   nds++ l +  +   +   lv++ +e+  ++++a +e+a+  +e+++ +e+q+a+++e++ ++e++++
  EHU02051.1 238 PVTLRANDSTSLLASLANMQTSLRRLVSQIKETAGSVASASDEIAQGNTELSSRTEQQAAALQETAASMEQLTA 311
                 56667777777777766666666777888888888899999999999999999999999999999999998765 PP

  == domain 4  score: 156.4 bits;  conditional E-value: 2.2e-49
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH..... CS
   MCPsignal   2 dlaeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqk 100
                  +a+ea + A++g+ ev+ + ++m++i+ s+ ++ di+ Vi++ia+QTN+LALNAa+EAARAGe GrGFaVVA+EVr LA+rsa aakei++li     
  EHU02051.1 325 TVAREAATLARSGESEVQRMSHTMNDIALSATKVRDITGVIESIAFQTNILALNAAVEAARAGEGGRGFAVVAGEVRILAQRSATAAKEIKELI----- 418
                 57999*****************************************************************************************..... PP

                 .........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 101 eindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                          e+++++v++g++ ++ tge++ ++v +v+ +a  ++ei+ as+eq ++i++v+ av++++ vt
  EHU02051.1 419 ---------EHAVEQVDSGVHVAAGTGESILKVVGMVNALAGAMDEISMASSEQMQGISQVSVAVSQMDGVT 481
                 .........9***********************************************************986 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   1.0   1.9e-17   4.9e-14       2     175 ..       1     177 [.       1     183 [. 0.92
   2 ?    0.4   1.0      0.16   4.2e+02      72     108 ..     294     330 ..     244     357 .. 0.63

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.9e-17
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieeleaeidkllekyek 100
                 +ki+++L ++f+ll+ l ii  +v +++++++ +++++ ++ ++++ +   ++   lr++   +++l l +d++++++  ++i + +a+  ++ e+   
  EHU02051.1   1 MKISTRLTMSFGLLITLFIICTSVAYTGMNNARNGMDEAVNVKMKKYRVGMDMYGGLRDMAVIVRNLALITDPDQMQREWQRIVTQKASYIENRERLAA 99 
                 8**********************************************************************************9999876666666555 PP

   4HB_MCP_1 101 ti...lteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvdlnlkvAeeayk 175
                 +     t++ +e ++++ ++     ++ + + +l  ++k+++A +++ + +rp   +l e+l+e+  l+ +++e++ +
  EHU02051.1 100 MVardSTPKAREAFDKIVSSEGPVLAALEHAGQLGLQNKQQDATSYLIKTVRPLQGQLLESLKEMTRLQMEDSEKSVE 177
                 5511178888****************************************************************9865 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.16
   4HB_MCP_1  72 kdkaekdellkdieeleaeidkllekyektilteeEk 108
                 ++ a  +e+++++e+l a + +++++   t + ++E+
  EHU02051.1 294 QQAAALQETAASMEQLTATVKSNTASAQHTATVAREA 330
                 3334455555555555555555555555555555554 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.39   9.9e+02     124     152 ..     137     165 ..      70     188 .. 0.52
   2 !   19.0   2.6   5.8e-07    0.0015      24     126 ..     237     345 ..     234     387 .. 0.77
   3 ?   -1.9   0.1       1.5   3.9e+03     112     112 ..     465     465 ..     397     511 .. 0.46

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.39
        Fez1 124 rqeaeeleelkreverlraeLkeerqkke 152
                 ++++++++ l ++v  l+++L e  ++  
  EHU02051.1 137 NKQQDATSYLIKTVRPLQGQLLESLKEMT 165
                 33333444444444444444433333322 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 5.8e-07
        Fez1  24 aevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelq.rkkseaellrekvekleeelkelreelselsleeeeaa.....le 116
                 a vt ++++  +l a+l +++++l++  ++ike+  s+ + ++e+ + + el+ r++++a  l+e++ ++e+ ++ ++++ ++++++++ a+     ++
  EHU02051.1 237 APVTLRANDSTSLLASLANMQTSLRRLVSQIKETAGSVASASDEIAQGNTELSsRTEQQAAALQETAASMEQLTATVKSNTASAQHTATVAReaatlAR 335
                 56899**********************************************97366889999***9999999999999977775544333332333322 PP

        Fez1 117 sdeakaqrqe 126
                 s e+++qr +
  EHU02051.1 336 SGESEVQRMS 345
                 2233333322 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.5
        Fez1 112 e 112
                 +
  EHU02051.1 465 Q 465
                 1 PP

>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   5.6e-05      0.14       9      62 ..     409     470 ..     402     476 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
  DAHP_snth_FXD   9 ateeqieevie.rieelGlkvhvskGeertViGviGdtsk.......ldkeqlealpgVekV 62 
                    +  ++i+e+ie  +e+ +  vhv  G+ + ++ v+G +++       +++ + e+++g+ +V
     EHU02051.1 409 TAAKEIKELIEhAVEQVDSGVHVAAGTGESILKVVGMVNAlagamdeISMASSEQMQGISQV 470
                    44689999999679999*******************87772222222445555788888877 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.5   3.6e-05     0.093      60     121 ..     249     311 ..     244     323 .. 0.82
   2 ?    0.2   0.3      0.29   7.4e+02      77     113 ..     448     484 ..     415     510 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.6e-05
        COG2  60 lSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeake.leekrellklllk 121
                 l ++L  +q++l+++ s+++++   v s+ +++++  +e++s+ e++++ l+e+ ++++ l  
  EHU02051.1 249 LLASLANMQTSLRRLVSQIKETAGSVASASDEIAQGNTELSSRTEQQAAaLQETAASMEQLTA 311
                 557899************************************999876515555577766654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.29
        COG2  77 plaaarkkvesvreklsereeeveskleeakeleekr 113
                  la a+++++ + ++  + +++v+  +++   +++++
  EHU02051.1 448 ALAGAMDEISMASSEQMQGISQVSVAVSQMDGVTQNN 484
                 5556666666666666666666666666655554444 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       3.6   9.1e+03       1      24 [.     157     180 ..     157     184 .. 0.70
   2 ?   12.7   0.5     5e-05      0.13       8      97 ..     267     356 ..     261     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
     DUF4200   1 llekkremfevqealeakkeeiqr 24 
                 lle  +em ++q++ ++k  ei  
  EHU02051.1 157 LLESLKEMTRLQMEDSEKSVEITS 180
                 567777888888887777777655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5e-05
     DUF4200   8 mfevqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseie 97 
                 + e+  +++ + +ei++ + +l++r e+  ++ qe   ++++++  +k+n a  +     a e + l ++ e+e++++ + ++++    +
  EHU02051.1 267 IKETAGSVASASDEIAQGNTELSSRTEQQAAALQETAASMEQLTATVKSNTASAQHTATVAREAATLARSGESEVQRMSHTMNDIALSAT 356
                 5566667788899*******************************************************************9998875555 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       1.6   4.2e+03     259     321 ..     114     178 ..     106     183 .. 0.56
   2 ?   10.0   3.4   0.00012       0.3     234     310 ..     247     323 ..     240     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
       IFT57 259 ekiesrEkylnsqleellqe.yrea.qeelsevkekykqlsegvseltrelaeiseelekvkqem 321
                 +ki s E  +   le+  q  ++++ q+  s + + ++ l++++ e  +e+++++ e ++ + e+
  EHU02051.1 114 DKIVSSEGPVLAALEHAGQLgLQNKqQDATSYLIKTVRPLQGQLLESLKEMTRLQMEDSEKSVEI 178
                 56666666666666665554444330334444556666666666666666666666655555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00012
       IFT57 234 ksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaei 310
                 +s+ +sl +++++l++l ++i++t   + s    + + + el +  +++ + l+e+  +++ql+++v++ t   + +
  EHU02051.1 247 TSLLASLANMQTSLRRLVSQIKETAGSVASASDEIAQGNTELSSRTEQQAAALQETAASMEQLTATVKSNTASAQHT 323
                 5778899999*************************999999999999999999999999999999998887654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2253  (0.125662); expected 358.6 (0.02)
Passed bias filter:                      824  (0.0459591); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 3711.04
//
Query:       EHU02052.1  [L=269]
Description: outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-63  212.0   0.3    1.1e-62  211.7   0.3    1.0  1  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph
    3.6e-05   23.8   0.0      7e-05   22.9   0.0    1.6  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
     0.0031   17.8   0.1     0.0096   16.2   0.1    1.7  1  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.037   14.1   0.2       0.74    9.9   0.0    2.2  2  HAD_2            Haloacid dehalogenase-like hydrolase
       0.53   10.5   3.9       0.32   11.2   0.6    2.4  3  Trp_ring         Trimeric autotransporter adhesin Trp ring do


Domain annotation for each model (and alignments):
>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.7   0.3   2.9e-66   1.1e-62      30     230 .]      26     239 ..       2     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 211.7 bits;  conditional E-value: 2.9e-66
                      --SSHHHHHCCHH.HCCHHHCHHHHHHHHHHHHHHCTHHHHT....TSEEEEEE--BTTTEEHHHHHHHCHHHTCHH-TTHHHHHHHTTGGCCE CS
  Acid_phosphat_B  30 dfktaelaeqvke.vtieqyssdskavvdqaynsakeaelka....dkkdavvfDiDeTvLsnspYqkyqglgkkkfdpekfdewvnkgeakai 118
                      + ++++l +q+   +++ q+s +++a+++qa+nsa+ a++++    +k++av++D+DeT+L+ns+Y+++q++++++f+++++++w+++++aka+
       EHU02052.1  26 QQAQQQLGQQTVLaLNWFQQSGEYQALCWQAFNSARLAFDQSaslaGKPKAVIVDLDETMLDNSAYSAWQVKNGQPFSDKTWSAWTQARQAKAV 119
                      222368888888778************************9999*************************************************** PP

                      CCHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHHHHHCT-TTBSCCEEECCSTTC---HHHHHHHHHHHHHHTTEEEEEEEESSGGGCHC...C CS
  Acid_phosphat_B 119 pgalelikkvverGvkiffvsgRseeqkaaTvenLkkagfssweklilkgkkdkqkksvvsyKeerrqklekkGynivlniGDnlsDlng...a 209
                      pga+e++++v+++G+++f+vs+R++++ aaTv+nL++ gfs++++ ++  k+d+++      K++r++++++ Gyn+vl+iGDnl+D+ g   +
       EHU02052.1 120 PGAVEFARYVNSHGGTVFYVSNRDQKDYAATVANLQQLGFSGVSEKTVSLKTDSSN------KQARFDAIKNAGYNVVLYIGDNLNDFGGatwH 207
                      *****************************************************999......**************************998877 PP

                      HHCTCCC...........CEEEE-TTSSSSCH CS
  Acid_phosphat_B 210 keaearg...........eriiklpNpmYgsl 230
                      + +++r+           +++i+lpNp+Yg++
       EHU02052.1 208 QGNAQRRafvdnnhalfgTQFIVLPNPLYGDW 239
                      77777779**********************98 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.9e-08     7e-05      11      63 ..     114     167 ..      77     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.9e-08
                  ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT--.--GGGE CS
  Hydrolase_6  11 rgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvd.iteeqv 63 
                  r+ ka+pga+e+ ++++++g +v++++N+ +k   + ++ l++lg++ ++e+ v
   EHU02052.1 114 RQAKAVPGAVEFARYVNSHGGTVFYVSNRDQKDYAATVANLQQLGFSgVSEKTV 167
                  6789******************************************96666655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.7e-06    0.0096     106     203 ..     105     201 ..      22     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HHHHH..TTGGGESEEEEHHCES.STTTSHHHHHHHHHHHT.STGGGEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
   Hydrolase 106 ralavftiadplkvkpeaaeavasLkaagievvlltgdnpetae.raanq..lGddyfdaviasdiet.vakpspegkvaaireLq.gkpeevamVGDg 199
                 +     t a + k  p+a+e+ ++ ++ g  v+ +++ +++ +   +an   lG        +++++t   k + + k+a  + ++ +  + v+ +GD+
  EHU02052.1 105 KTWSAWTQARQAKAVPGAVEFARYVNSHGGTVFYVSNRDQKDYAaTVANLqqLG------FSGVSEKTvSLKTDSSNKQARFDAIKnAGYNVVLYIGDN 197
                 56666677788899**************99899999877755553555532478......33333333566778888888888886444777******* PP

                 HHHH CS
                 xxxx RF
   Hydrolase 200 vnDa 203
                 +nD 
  EHU02052.1 198 LNDF 201
                 ***6 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.048   1.7e+02       1      16 [.      77      92 ..      77      99 .. 0.86
   2 ?    9.9   0.0   0.00021      0.74      64     168 ..     105     204 ..      88     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.048
       HAD_2  1 iiFDlDgTlldteeli 16
                +i DlD T+ld + ++
  EHU02052.1 77 VIVDLDETMLDNSAYS 92
                789********99876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00021
       HAD_2  64 ellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksre...aveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvG 159
                 + ++ + +     + k ++g+ e+  +++++g ++  v++++++   a+  +l+qlg+  + ++ v+ ++ + +K   +    a+++ +   + v+y+G
  EHU02052.1 105 KTWSAWTQAR---QAKAVPGAVEFARYVNSHGGTVFYVSNRDQKdyaATVANLQQLGFSGVSEKTVSLKTDSSNK---QARFDAIKNAG--YNVVLYIG 195
                 4445555444...45999*********************997761115667788899999999999888888886...55556666555..578***** PP

       HAD_2 160 DsptDieaa 168
                 D+ +D+ +a
  EHU02052.1 196 DNLNDFGGA 204
                 *****9988 PP

>> Trp_ring  Trimeric autotransporter adhesin Trp ring domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1     4e+03       8      20 ..      87     100 ..      83     101 .. 0.78
   2 ?   11.2   0.6     9e-05      0.32       5      41 ..     139     176 ..     117     179 .. 0.90
   3 ?   -2.1   0.1       1.3   4.6e+03      14      36 ..     181     205 ..     180     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
    Trp_ring   8 dgnaYsa.aVkNAn 20 
                 d++aYsa +VkN +
  EHU02052.1  87 DNSAYSAwQVKNGQ 100
                 56788877999976 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9e-05
    Trp_ring   5 Vsa.dgnaYsaaVkNAneVkFvGeggakVsGktdedgv 41 
                 Vs  d+++Y+a+V N ++  F G    +Vs ktd+ ++
  EHU02052.1 139 VSNrDQKDYAATVANLQQLGFSGVSEKTVSLKTDSSNK 176
                 5666899*****************99999999987665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
    Trp_ring  14 aaVkNA..neVkFvGeggakVsGkt 36 
                 +a+kNA  n V + G+++ +  G+t
  EHU02052.1 181 DAIKNAgyNVVLYIGDNLNDFGGAT 205
                 5788886677888888877766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2234.42
//
Query:       EHU02053.1  [L=210]
Description: carbonic anhydrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-43  147.0   0.0    6.4e-43  146.7   0.0    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.0   3.6e-47   6.4e-43       2     155 ..      40     196 ..      39     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 3.6e-47
                 EEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHS..HHCCSTTSSHHHHHHHHHHHHHHHC CS
      Pro_CA   2 lvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalk..aekseeeagaidkwlekirealekv 98 
                 l+igCsDSRvp+e++t+++pG+lFv+rn++n+v+ +d+++l++l+yAv  l+vk+iv  GH++CG+v+aal+   +  ++e++a+++ ++ +r+ l+++
  EHU02053.1  40 LWIGCSDSRVPEEVLTGSHPGELFVHRNIANMVVAEDDNLLSVLQYAVFFLGVKRIVLSGHYGCGGVQAALNlpGSPLATEDSALARRITCLRDGLASH 138
                 8***********************************************************************9955667889*************9998 PP

                 HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS.-EEEEEEEETTTTE CS
      Pro_CA  99 eeelesekekearerlleeenVaeqlenLlekpvvreavekgk.lkvhGlvydletGe 155
                   +  +++++ ++ ++l+e+nV+ q+++L++++ vr+a+++g+ l+v+G+vydl++G+
  EHU02053.1 139 LGDPTAQETEGEKLNRLVEANVRVQFARLVASDPVRQAWQSGQeLDVFGCVYDLQSGH 196
                 87777777555555666*************************99************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1725.61
//
Query:       EHU02054.1  [L=491]
Description: sulfate permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-52  177.4  25.9    3.7e-52  177.4  25.9    1.5  1  Sulfate_transp  Sulfate permease family
    1.4e-06   28.7   5.1    1.4e-06   28.7   5.1    4.4  3  MFS_MOT1        Molybdate transporter of MFS superfamily
  ------ inclusion threshold ------
       0.19   11.8   1.0       0.98    9.5   0.1    2.7  2  MitoNEET_N      Iron-containing outer mitochondrial membrane 


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4  25.9   6.2e-56   3.7e-52       1     363 [.       6     363 ..       6     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 6.2e-56
  Sulfate_transp   1 lkgDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviq 95 
                     l+ D++aG++v+l+a+P+ l++a+++glpp++gL + v+++++   +  sr  ++Gp a l +iv + +a +            +t+ ++aG++q
      EHU02054.1   6 LRRDVPAGLVVFLVALPLCLGIAQASGLPPFAGLLTGVIGGIIVTSLSPSRFAVSGPAAGLVTIVVASMATL------GSFSAFLTALIIAGLLQ 94 
                     689*************************************************************99999999......8888999999******* PP

  Sulfate_transp  96 vllGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnlekvnlakvvlgllllvvLlvtkellkklkkllv 190
                     +l+GllR g+ + +++ +v+ G++a++++ ++++qi v lg          v+ + sl++   +++l +++++l+ l++L+ ++     ++ +  
      EHU02054.1  95 CLFGLLRAGRFIALVPGSVIKGMLAAIGLLLIMQQIPVALGAG------GSVKLV-SLVNGEMTFSLSALLVSLVGLFILFAWTTGPI-KRIKAI 181
                     ******************************************5......555544.5555555999****************999433.334477 PP

  Sulfate_transp 191 ipapaelvavivatlvsaif........elkreagvkivgeipsglpelslpkvdwsllsallpdalaialvglleaiavsksldk..kkgykvd 275
                     + +p++l+av+++  v+++         +++ +     + +++  + el++p++   + +++   a+++alv++le++++ ++l k   ++   +
      EHU02054.1 182 AWIPGPLFAVLFGCGVTVLGarlfpsltDALPRISLPAFDSVSAMIAELETPDWMAWQNPQVWVVAVTLALVASLETLLSQEALKKlrPQNPAPS 276
                     889***************9977777655555555555699************99889999*************************9444678899 PP

  Sulfate_transp 276 snkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkel 363
                     +n+E++A+G+ Ni ++++g++p+t++++rs  n++aGa+t+ls l++++++l+  + ++++l+ iP a Laa++++ g++ L+  + +
      EHU02054.1 277 PNREMFAQGIGNITAGFLGAMPITAVIVRSSANVNAGAQTKLSILLHGVMLLICGMWFSEMLNAIPLASLAAVLLYTGYK-LAAPRLF 363
                     ******************************************************************************99.7665555 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  18.1     0.078   4.7e+02      46     111 .]      56     125 ..      11     125 .. 0.67
   2 ?   -0.7   3.1       0.3   1.8e+03      48     103 ..     129     192 ..     126     202 .. 0.53
   3 !   28.7   5.1   2.3e-10   1.4e-06      25     111 .]     264     357 ..     208     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.078
    MFS_MOT1  46 fggvPmc.......hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaGleL 111
                  ++v  +        +A+++     + +   +a i+ Gl+ +l+gl++   r+ +l+P sv++g+l++ Gl L
  EHU02054.1  56 RFAVSGPaaglvtiVVASMATLG--SFSAFLTALIIAGLLQCLFGLLR-AGRFIALVPGSVIKGMLAAIGLLL 125
                 33333335555533445555555..6788899***************8.899******************987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.3
    MFS_MOT1  48 gvPmchgAgglaaqyrf...gartgaagillGlv...llllgltgllerl..lrliPksvlggl 103
                 ++P++ gAgg +  +     +     +++l++lv   +l+   tg ++r+   ++iP +++ +l
  EHU02054.1 129 QIPVALGAGGSVKLVSLvngEMTFSLSALLVSLVglfILFAWTTGPIKRIkaIAWIPGPLFAVL 192
                 6788877777766644455333444555555544110444444444444411445888876554 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 2.3e-10
    MFS_MOT1  25 a.........slsltalllsvGlmnlltglfggvPmchgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaGleL 111
                 a           s+++ ++  G+ n+++g++g++P+ ++     a+++ ga+t  +++l G++ll+ g+ +  +++l++iP + l ++ll +G +L
  EHU02054.1 264 AlkklrpqnpAPSPNREMFAQGIGNITAGFLGAMPITAVIVRSSANVNAGAQTKLSILLHGVMLLICGMWF--SEMLNAIPLASLAAVLLYTGYKL 357
                 05555566663358888999*****************999999999899*******************987..9*******************987 PP

>> MitoNEET_N  Iron-containing outer mitochondrial membrane protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.43   2.6e+03      18      44 ..     216     243 ..     209     255 .. 0.67
   2 ?    9.5   0.1   0.00016      0.98      33      56 ..     334     357 ..     329     362 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.43
  MitoNEET_N  18 slPiPkSfgg.ifrLslkdwLalvpfaa 44 
                 slP  +S+   i+ L+  dw+a   + +
  EHU02054.1 216 SLPAFDSVSAmIAELETPDWMAWQNPQV 243
                 5677777764368899999998655544 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00016
  MitoNEET_N  33 lkdwLalvpfaavtaalgYlayka 56 
                 +++ L+++p+a+  a+l Y+ yk 
  EHU02054.1 334 FSEMLNAIPLASLAAVLLYTGYKL 357
                 89********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3665.23
//
Query:       EHU02055.1  [L=476]
Description: hypothetical protein CKS_0553 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-36  123.5   0.0    9.1e-36  123.0   0.0    1.2  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   5.1e-40   9.1e-36       1     161 []     300     461 ..     300     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 5.1e-40
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a++D lT+L +R+ l e+l++e + a+r   +++v+lld+d+Fk++nd++Gh++GD vL e+a+r+s  + ++  ++R+gg+eF+++  + s e+  +l
  EHU02055.1 300 ADYDFLTQLLSRSGLYERLRNEPSYAQR---QVGVILLDVDYFKSVNDNFGHDAGDSVLEEIARRISPLVGSKGHICRFGGEEFVVVQFDLSPEKIYSL 395
                 689***********************66...8******************************************************************* PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TT....S-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeeg....edleellkeAdealyeaKkagrnr 161
                 ae ir+ + + k  ++ ++ +++vt+s+G a  + + g    e++++l+++Ad++ly  K++grn+
  EHU02055.1 396 AEGIRQSIVREKFVLQGNAVTVTVTVSLGLANGEAQPGtawaETINNLISAADKNLYISKRNGRNQ 461
                 *******************************9986665223378999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3655.24
//
Query:       EHU02056.1  [L=366]
Description: D-alanine-D-alanine ligase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-77  258.6   0.0    4.6e-77  258.2   0.0    1.2  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    7.4e-30  103.5   0.0    1.2e-29  102.8   0.0    1.4  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    6.3e-11   42.1   0.0    1.3e-10   41.1   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    1.6e-05   24.5   0.0    2.6e-05   23.8   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    0.00027   20.6   0.5     0.0076   15.9   0.5    2.6  1  ATP-grasp_4      ATP-grasp domain
    0.00035   20.6   0.0    0.00071   19.7   0.0    1.5  1  ATP-grasp_3      ATP-grasp domain
    0.00043   19.6   0.0       0.47    9.7   0.0    2.2  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.2   0.0   1.8e-80   4.6e-77       1     204 []     148     349 ..     148     349 .. 0.98

  Alignments for each domain:
  == domain 1  score: 258.2 bits;  conditional E-value: 1.8e-80
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETS CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgne 94 
                      ll++aGl+v+p++ +++++ ++ +   +e+v++++g+p+fVKpa++GSSvGvskv+ ++ l  a+e af +d+k l+E+ai+greie+avlgne
       EHU02056.1 148 LLRDAGLQVAPWLSVTSSQLNQLD---TEAVIARFGLPLFVKPANQGSSVGVSKVTHAAALLPALEMAFTFDRKALIEKAIKGREIECAVLGNE 238
                      7899*******************9...99***************************************************************** PP

                      SCEEEEEEEEE-SSSSS-HHHHHC..TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHH CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysd.dkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpkl 187
                      ++++s++ge+vvk+gfy y++ky+  + aq ++pa+++++v ++i+++a+ka+++l++ G+aRvD+f+teegeiv+nEvNtlPGfT+iS++pkl
       EHU02056.1 239 EPQASPCGEVVVKEGFYSYDTKYISeTGAQTVIPAAIPPDVDAAIRQVAIKAFTTLECFGMARVDVFYTEEGEIVINEVNTLPGFTNISMYPKL 332
                      ***********************6659******************************************************************* PP

                      HHCTT--HHHHHHHHHH CS
  Dala_Dala_lig_C 188 akasGlefkkLvdqlie 204
                      ++a+Gl++++L+++lie
       EHU02056.1 333 WQAAGLSYQDLITRLIE 349
                      ***************96 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   4.8e-33   1.2e-29       1     103 []       6     131 ..       6     131 .. 0.84

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 4.8e-33
                      EEEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-E..............HHHHHHHHTTHHH....................TC CS
  Dala_Dala_lig_N   1 kiavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkw..............kkkaekleskekk....................kl 60 
                      +++++fGGkS+EhevSl+sak++++a+dk+++ev+l+gi+k+g+w                          +                     l
       EHU02056.1   6 RVGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWhlndassfllnaenP-----------SlialnrtakqialipgepeqPL 88 
                      699******************************************887655555554440...........15555555566666677676577 PP

                      CCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHHHTT--BSS- CS
  Dala_Dala_lig_N  61 kkeeekekkaeldvvfpvlhGkngEDGtlqgllellgipyvGs 103
                         ++ ++  +ldv+fpv+hG++gEDG lqgll ++ +p+vGs
       EHU02056.1  89 IARDDAHSLSQLDVIFPVVHGTQGEDGALQGLLRMASLPFVGS 131
                      888899999*********************************7 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   5.2e-14   1.3e-10       2     157 ..     150     318 ..     149     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 5.2e-14
                 HTTT--B-EEEEECCHH....HHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----.SEEEEEEEEE....ETTC- CS
   ATP-grasp   2 eklglpvprflaveske....eleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpf.ekElsvlvvr....saeGe 89 
                 +++gl+v+++l v+s++    ++e++++++glp+ vK +  g++  G s v +++ l  ale++   ++k ++E+ ++  e E +vl+      s  Ge
  EHU02056.1 150 RDAGLQVAPWLSVTSSQlnqlDTEAVIARFGLPLFVKPANQGSS-VGVSKVTHAAALLPALEMAftFDRKALIEKAIKGrEIECAVLGNEepqaSPCGE 247
                 5789*********9998887788999***********8888877.6888888888888888888899**********9626799999988555556699 PP

                 EEE--EEEEEEET...TEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEE CS
   ATP-grasp  90 tafypvvetvqed...gilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnEla 157
                 +++ +    +  +   ++  + v pa+++ +  + ++++a k+  +L+  G+  v +F++e+ge+++nE+ 
  EHU02056.1 248 VVVKEGFYSYDTKyisETGAQTVIPAAIPPDVDAAIRQVAIKAFTTLECFGMARVDVFYTEEGEIVINEVN 318
                 888776665555500055567899*********************************************95 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     1e-08   2.6e-05       1     178 [.     141     319 ..     141     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1e-08
                  SHHHHHHHHHHTT-BBSSEECSSBSSHH..HHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEE CS
  CPSase_L_D2   1 Dkesakealkkinvpvvpssaapvetle..ealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiE 96 
                  Dk+  k++l++++ +v+p  +++ ++l+  ++ a+ +++g P  +k+a  +   G   +++ + l  ++++a++        ++ l+ek +kg +eiE
   EHU02056.1 141 DKDFTKRLLRDAGLQVAPWLSVTSSQLNqlDTEAVIARFGLPLFVKPANQGSSVGVSKVTHAAALLPALEMAFTFD------RKALIEKAIKG-REIE 231
                  88899999999****99977776555441156678899**********9988888888888888887777777766......689******98.9*** PP

                  EEEEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS.....--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEES CS
  CPSase_L_D2  97 vevlrDakgnvitvcerenslql..rtqkvievAPsqt.....LtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNt 178
                  + vl  ++  +  ++e            k i +  +qt     + ++   a+r+ a+k+  +++  g + v+  + + ++e+++ EvNt
   EHU02056.1 232 CAVLGNEEPQASPCGEVVVKEGFysYDTKYISETGAQTvipaaIPPDVDAAIRQVAIKAFTTLECFGMARVDVFYTE-EGEIVINEVNT 319
                  *****9998877776654444444456678888888872222245677899*********************99996.9*********8 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5     3e-06    0.0076       3     151 ..     181     320 ..     179     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3e-06
  ATP-grasp_4   3 lPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepv..ilnilkkefas..eedvsd 96 
                  lP+ +KP+++ +S+GV+k+ +++ +  a++                   ++++l+E+ i+G E+ + ++ +ee ++      ++k  f+s  ++++s+
   EHU02056.1 181 LPLFVKPANQGSSVGVSKVTHAAALLPALEMAF--------------TFDRKALIEKAIKGREIECAVLGNEEPQASpcGEVVVKEGFYSydTKYISE 264
                  7999****************9998888654222..............2357899************99999986544104456667666511567999 PP

  ATP-grasp_4  97 rl..yvtsakvieetlealeellkevnallglknf.pvHiElrvsedgkiipiEvnpl 151
                  +    v++a++  +  +a+ ++  ++   + l+ f  + + +  +e+g+i+  Evn l
   EHU02056.1 265 TGaqTVIPAAIPPDVDAAIRQVAIKAF--TTLECFgMARVDVFYTEEGEIVINEVNTL 320
                  876678999999999999999876666..455544156899*******9999999986 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.8e-07   0.00071       3     155 ..     141     318 ..     139     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.8e-07
                  SHHHHHHHHTTT.S---..............-EESS--......SSSEEEEESS-------B--SS--TTE.............EEEE---SEEEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP..........tkleaeeleee......ekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplSvs 78 
                  dK +t + L++ag++v           +     +l+ e        +l vKp++ + + +v++v +  ++  a+e+        l+ + i+G+++   
   EHU02056.1 141 DKDFTKRLLRDAGLQVApwlsvtssqlN-----QLDTEaviarfGLPLFVKPANQGSSVGVSKVTHAAALLPALEMAFtfdrkaLIEKAIKGREIECA 233
                  7888888999998876448877554332.....2222233445589999*****************999888887766788888************** PP

                  EEE.SSSEEEEEEEEEEEET.........TEEEEEEES----H....HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEE CS
  ATP-grasp_3  79 llsdgekvlvlavnrqliekaeke.....fvyaGnvtpietel....keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvN 155
                  +l+++ + +   + + +++ +  +     ++ +G  t i+       +  ++++a ++   l +++G++ vD+ +++ +e+++ EvN
   EHU02056.1 234 VLGNE-EPQASPCGEVVVKEGFYSydtkyISETGAQTVIPAAIppdvDAAIRQVAIKAFTTL-ECFGMARVDVFYTEeGEIVINEVN 318
                  ***65.55554444444444333355445888998876665543355778888999999999.************995666666999 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00071       1.8      21      81 ..     141     201 ..     136     207 .. 0.91
   2 !    9.7   0.0   0.00018      0.47     228     271 ..     283     326 ..     269     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00071
  ATPgrasp_ST  21 dKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilvite 81 
                  dK  +k+l+ +agl+v   l v + q +  + ea+++++   +++Kpa++ +  G++++t+
   EHU02056.1 141 DKDFTKRLLRDAGLQVAPWLSVTSSQLNQLDTEAVIARFGLPLFVKPANQGSSVGVSKVTH 201
                  9999**********************999999*******555*******999999999876 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
  ATPgrasp_ST 228 vlelaakaaeklpglgylGwDivldeekgplllElNarpglaiv 271
                  + ++a ka ++l + g+  +D+  +ee+++++ E+N+ pg + +
   EHU02056.1 283 IRQVAIKAFTTLECFGMARVDVFYTEEGEIVINEVNTLPGFTNI 326
                  557899*********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2648.29
//
Query:       EHU02057.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02057.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02057.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02057.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02057.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 799.00
//
Query:       EHU02058.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02058.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1057.50
//
Query:       EHU02059.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-97  326.8   4.4    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    8.1e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
       0.03   13.9   1.8       0.04   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.033   13.4   0.8      0.062   12.5   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.037   13.9   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
      0.063   11.8   7.7        0.1   11.1   7.7    1.3  1  FUSC             Fusaric acid resistance protein family
       0.13   12.6   3.4       0.86   10.0   0.2    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.17   11.0   0.3       0.28   10.4   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.28   11.0  10.4       0.45   10.3  10.4    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   10.9   2.4       0.86    9.3   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.34   11.3   4.0       0.56   10.6   1.9    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.46   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
        0.5   10.1   7.3       0.78    9.5   7.3    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.78    8.9   2.7        1.2    8.4   2.7    1.1  1  TMPIT            TMPIT-like protein
        2.3    8.4   8.3        1.1    9.5   5.2    1.8  2  CREPT            Cell-cycle alteration and expression-elevate
        2.9    7.4   7.6        6.7    6.2   7.6    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.3    7.1   8.7         17    6.1   2.1    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.9      0.11     1e+02     167     221 ..      34      91 ..      21     121 .. 0.46
   2 !  325.1   0.0  4.3e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   + i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU02059.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   46666666667777777777763334432233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.3e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02059.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02059.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02059.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.5e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.5e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02059.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.1e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.1e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02059.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.1e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.1e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU02059.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.4e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.68
   2 ?   -1.3   0.0       1.4   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU02059.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334444455555555566666677789999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02059.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8     7e-05     0.062      47     106 ..      34      90 ..      25     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02059.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.1   1.9e+03      26      53 ..      16      43 ..       9      70 .. 0.73
   2 ?    5.1   0.0     0.023        21      15      54 ..      64     103 ..      58     123 .. 0.81
   3 ?    5.1   0.0     0.023        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpq 53
                l+e++ +i+ + e  +l++++++ ++  
  EHU02059.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                6788888888888888888887666554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.023
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU02059.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555554.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02059.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.7   0.00011       0.1     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02059.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00096      0.86      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.15   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00096
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU02059.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.15
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02059.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00031      0.28      24      77 ..      37      92 ..      32     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU02059.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00034      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02059.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4    0.0005      0.45      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0005
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02059.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.3   0.00096      0.86     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.26   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00096
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU02059.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU02059.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00063      0.56       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00063
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU02059.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU02059.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0011      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU02059.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   0.00087      0.78     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00087
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02059.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7    0.0013       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02059.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445556666666666666666777777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.2    0.0012       1.1      44     141 ..      10     115 ..       6     117 .. 0.73
   2 ?   -1.5   0.0       2.8   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
       CREPT  44 eeaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeeklee.....lkeklekvksvrkelkshi..qsLPdLtelpdvtg 134
                 +  ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl+e     ++e  e++++ ++e+ + +  q  P L +l   ++
  EHU02059.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAkLQRMQFGKSSEKLREktarqVREAEERISALQEEMAEVLgeQHDPALPQLLRQSS 108
                 56778999999********************99999999987615667777766665542111166777778888888777663334577777777888 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU02059.1 109 ARKPLPA 115
                 9999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU02059.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.6    0.0075       6.7      71     153 ..      14      98 ..       2     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0075
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU02059.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666666666666666666667777888889999999999877644778888999***********************988774 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1     0.019        17      22      53 ..      12      43 ..       9      68 .. 0.89
   2 ?    2.6   1.6      0.24   2.2e+02      34      57 ..      68      91 ..      42      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.019
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02059.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02059.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1441  (0.0803726); expected 358.6 (0.02)
Passed bias filter:                     1034  (0.0576719); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.38
# Mc/sec: 4171.01
//
Query:       EHU02060.1  [L=593]
Description: hypothetical protein CKS_0560 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-61  207.7   0.0    4.1e-61  206.5   0.0    1.6  2  EAL       EAL domain
    2.5e-09   37.5   0.0    9.8e-09   35.6   0.0    2.0  2  GAF_2     GAF domain
    3.8e-09   37.3   0.0    1.1e-08   35.8   0.0    1.8  1  GAF       GAF domain
    0.00098   18.9   0.0     0.0018   18.1   0.0    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.78   3.5e+03      86     115 ..      30      60 ..      13      71 .. 0.58
   2 !  206.5   0.0   9.2e-65   4.1e-61       3     238 .]     341     575 ..     339     575 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.78
                 EEEEEE--CHHCC-CC.HHHHHHHHHHCCT- CS
         EAL  86 iklsinlspasladee.fleelrellkqsgp 115
                 ++ +++l +++l  ++ f++ + +++++ + 
  EHU02060.1  30 LRKFVRLASQALNIPGsFISIIDDEFQYVRA 60 
                 3336666666666666666666666654444 PP

  == domain 2  score: 206.5 bits;  conditional E-value: 9.2e-65
                 HHHHHC.CTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC- CS
         EAL   3 alreal.enkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslad 99 
                 +l +al e+  l+l+yQP + l++gk +gleal+rw+hp++g +sp++f+plae++  l +l++wv+++++++l+rl+ +    ++++ in+s+++++ 
  EHU02060.1 341 DLARALrEDVGLYLVYQPKICLQSGKPIGLEALIRWHHPERGELSPATFIPLAEQTETLTALTSWVIDNVIARLKRLRnS--CIQLPVTINVSERDFSL 437
                 67888844449*******999********************************************************844..557777*********** PP

                 CCHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCH CS
         EAL 100 eefleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkali 198
                 ++f++ l+e + ++++++s L +e  e+e + +  +   + l++L+ +G+ i+lddfgtgys++syl+r+p+d+iKldrsl+++l +d  ++ +++ +i
  EHU02060.1 438 DGFADSLEEKMLKAKLPTSLLGIECLETERIVESPSSM-RGLEMLKLRGFGISLDDFGTGYSNISYLRRMPLDVIKLDRSLISELSSDMASRIIARNII 535
                 ********888678888888********9999999999.9*********************************************************** PP

                 HHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 199 alakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 ++ kel++ v+aegVe  +++eal e+gcd +QG+++s+p
  EHU02060.1 536 TMLKELDYVVLAEGVECVDTVEALTEYGCDQAQGFFYSRP 575
                 **************************************99 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   2.2e-12   9.8e-09       3     137 ..      25     157 ..      23     158 .. 0.79
   2 ?   -1.8   0.0      0.79   3.5e+03      54      91 ..     276     316 ..     220     324 .. 0.57

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 2.2e-12
                 HHHHHHHHHHHHHHH.SS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B--.-TTHHHHHHHHTS-EEES-.GGG.-S-HHHHHHHHHTT--EEEEE CS
       GAF_2   3 dleelldlvldelve.lgaalgyillvdddgglrlaawgeaeeefgaaldrpl.geglvgealrtgrpvilnd.lee.dpdkkglpaghaglrsflavP 97 
                 + +++l+  ++ + + l++  ++i ++dd  +++++     +++++ +l+r+  +++l+ +a+    +v++ d + +   + ++l  g++ +r  ++vP
  EHU02060.1  25 SRDDILRKFVRLASQaLNIPGSFISIIDD--EFQYV-----RASHNFKLERSSrEDSLCRYAVDGDTAVVVPDtYLDsRFAAHPLIVGAPFIRFYAGVP 116
                 789**********8879***********4..43344.....44444444444415559***************8777234444444777777777**** PP

                 E-T.TS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  98 lis.egrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 l   +g  +G l++   +p++f++++++ L++l++++   +
  EHU02060.1 117 LKNrDGINLGTLCVTDVQPHPFSASQITTLQLLSSLVMSFL 157
                 *9989*****************************9998776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.79
                 --TTH.HHHHHHHTS-EEES-.GGG-S-HHHHH.HHHHTT- CS
       GAF_2  54 lgegl.vgealrtgrpvilnd.leedpdkkglp.aghaglr 91 
                 lgegl vg + +tg+  +++  ++ ++  +++  a h++++
  EHU02060.1 276 LGEGLsVGLSTHTGEVDFVSGiFPPHETLRQAVsALHEAIG 316
                 46663366666666555555553333333333335555554 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.4e-12   1.1e-08       2     129 ..      26     153 ..      25     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.4e-12
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC.EEEET.TSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE. CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhydipqasrw.lfmkn.grgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn. 97 
                 ++++l++ v+ ++++l+     + +   d  +y + ++ ++ l+++   +++c +++  + ++v+pd+  d+rfa+  ++ +++++ ir +++vPl+n 
  EHU02060.1  26 RDDILRKFVRLASQALNIPGSFISII-DDEFQY-VRASHNFkLERSSrEDSLCRYAVDGDTAVVVPDTYLDSRFAA--HPLIVGAPFIRFYAGVPLKNr 120
                 789*****************999872.333355.6666666744444588899**************99*******..********************8 PP

                 TTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHH CS
         GAF  98 dgelwGllvlhnpsp.pftreelellqvladqv 129
                 dg  +G+l++++ +p pf+ +++  lq l+++v
  EHU02060.1 121 DGINLGTLCVTDVQPhPFSASQITTLQLLSSLV 153
                 8889********66667*********9998876 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     4e-07    0.0018       3      93 ..     166     259 ..     164     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 4e-07
                 B-CCCGSEEHHHHHHHHHHHHHCC.HHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T..TSEEEEESSSEEEEEEECSSH CS
       GGDEF   3 hDslTgLpNRrlleeeleqelqra.rreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk..sdlvaRlggdeFaillpetss 93 
                 +D++TgLpNR+ l + +  + +   ++  + + + ++d+ +  ++  + G    + +L+ va+ L   lr+  sd+++ +   +Fa+l    s+
  EHU02060.1 166 VDPVTGLPNRQRLIRDMHYLSAAGdTTLRRLVLIDCIDMPRAYELARSMGMGPVESLLKDVATLLPLRLRPaaSDIIYTVATGRFAVLTRADSR 259
                 7*****************9999995554455555599*********************************999************999765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4565.09
//
Query:       EHU02061.1  [L=489]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-44  149.8  17.2    6.2e-44  149.8  17.2    2.9  3  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
    0.00056   20.2   1.4     0.0074   16.6   0.0    3.5  3  HAMP       HAMP domain


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.2     0.013   1.2e+02     131     170 ..     209     248 ..     180     260 .. 0.63
   2 !  149.8  17.2   6.9e-48   6.2e-44       7     172 .]     267     418 ..     261     418 .. 0.97
   3 ?   -0.9   0.1      0.14   1.3e+03     140     163 ..     421     444 ..     416     453 .. 0.55

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 131 keiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 + + ++++++a+   +++  ++ q+a++ee++ ++e++++
  EHU02061.1 209 SVLRDEASDIAKGNADLSNRTATQAAALEETAASMEQLTA 248
                 3334555666666666777777777777777777766554 PP

  == domain 2  score: 149.8 bits;  conditional E-value: 6.9e-48
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......... CS
   MCPsignal   7 aseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkeinds 105
                 + ++ ++g++ v+ vv++me ++  +++i + ++ i++ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsa+aakeie li          
  EHU02061.1 267 TAQTTQQGEQLVKTVVGAMEGLSVGAEKIRQFTATINGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIEGLI---------- 355
                 567889***********************************************************************************.......... PP

                 ....HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 106 vesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                      +t+  +++g + ++++g++++e+  +v++v+dl+ +ia aseeqs++i++v+ av+e+++vt
  EHU02061.1 356 ----ADTVAGISQGRDAANTAGSTMEEVLRNVGSVNDLIGQIALASEEQSKGISQVTLAVAEIDRVT 418
                 ....8999********************************************************986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 140 vadlvqeiaaaseeqsasieevnq 163
                  ++lvq i+a++e +s+  e  ++
  EHU02061.1 421 NSSLVQTISASAESMSSQTETLTS 444
                 445566666666555555444444 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.25   2.2e+03      11      29 ..     103     121 ..     103     129 .. 0.75
   2 !   16.6   0.0   8.3e-07    0.0074       6      41 ..     152     187 ..     148     199 .. 0.81
   3 ?   -1.0   0.1      0.26   2.3e+03      13      28 ..     211     228 ..     210     251 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
                 HHHHHHHHHHTTTBTSSTC CS
        HAMP  11 rrLaraarriaaGdldtrl 29 
                 +rL++ +++i+++++  ++
  EHU02061.1 103 ERLRALTQQISSNNVPLSV 121
                 5899999999998766555 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 8.3e-07
                 THHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHH CS
        HAMP   6 ilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLa 41 
                 ++rP+ +L+++ r ia+Gdl++ +++ gr+ +G+++
  EHU02061.1 152 LVRPVAKLRDHFRIIADGDLTQEPEDLGRNCVGQMV 187
                 89*********************9998887666665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.26
                 HHHHHHHHTTT..BTSST CS
        HAMP  13 LaraarriaaG..dldtr 28 
                 L++ a  ia+G  dl+ r
  EHU02061.1 211 LRDEASDIAKGnaDLSNR 228
                 677788888887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1486  (0.0828825); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3643.58
//
Query:       EHU02062.1  [L=78]
Description: hypothetical protein CKS_0562 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   19.0   0.5     0.0018   18.6   0.5    1.2  1  HTH_31    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.3   0.1       0.05   13.7   0.1    1.4  1  HTH_3     Helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5     2e-07    0.0018       6      33 ..      16      43 ..      15      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-07
      HTH_31  6 LralReraGLsqeevAerlgvsestlsr 33
                +r+lR +aGLsqe +Aer  +s   +  
  EHU02062.1 16 VRELRIAAGLSQEGAAERFDLSLRAWQT 43
                69*******************9988865 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   5.6e-06      0.05       1      22 [.      16      37 ..      16      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-06
                HHHHHHHTTHHHHHHHHHHTSS CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvs 22
                ++elR ++glsqe +Ae+ ++s
  EHU02062.1 16 VRELRIAAGLSQEGAAERFDLS 37
                69****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 645.42
//
Query:       EHU02063.1  [L=334]
Description: sensory box/GGDEF family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-15   55.5   0.0    9.5e-15   54.7   0.0    1.4  1  PAS_9     PAS domain
    3.1e-14   52.9   0.0    5.1e-14   52.2   0.0    1.3  1  PAS       PAS fold
      9e-13   48.4   0.3    1.8e-11   44.3   0.0    2.8  3  PAS_4     PAS fold
    4.4e-10   40.3   0.0    7.3e-10   39.6   0.0    1.3  1  GAF       GAF domain
    1.2e-08   34.8   0.0    6.3e-08   32.5   0.0    2.3  2  PAS_8     PAS domain
    4.7e-06   26.5   0.1    9.4e-06   25.5   0.1    1.5  1  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
      0.066   13.5   0.0       0.13   12.6   0.0    1.5  1  PAS_3     PAS fold
      0.067   13.6   0.0       0.13   12.6   0.0    1.4  1  DUF1040   Protein of unknown function (DUF1040)


Domain annotation for each model (and alignments):
>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.2e-18   9.5e-15       1     103 [.     170     274 ..     170     275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 4.2e-18
       PAS_9   1 pdgili.dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk......kerevevvlirkngetfwvlltaspvkdddgel 92 
                 pd+i++ d + g i+++N+aa +++Gy++ e++gk++  l+  +++ + + r+ l++++        +r+ ++   r nge+f++++++s  +++++++
  EHU02063.1 170 PDAIICtDLNRG-ITFWNPAATNMFGYDASEMMGKYVAGLI--PERCQTDYRNELDRLEHdddaiaVPRTLQIWGKRCNGEEFPAEVSFSGWREGEERY 265
                 678887355555.****************************..***********************9******************************** PP

       PAS_9  93 vgiivilrDit 103
                 vg   i+rD+t
  EHU02063.1 266 VG--MIIRDVT 274
                 **..******9 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.3e-17   5.1e-14       2     113 .]     161     273 ..     160     273 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.3e-17
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC....TTSSEEEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl....rdgrpihlevraspv 96 
                 +l+ai  ++pd+i+ +D +  i+++N+aa+ ++G++++e++gk + +li+e  + ++++  + +le+  ++ a+ +++      ++g+++++ev  s  
  EHU02063.1 161 RLEAISVTSPDAIICTDLNRGITFWNPAATNMFGYDASEMMGKYVAGLIPERCQ-TDYRNELDRLEHDDDAIAVPRTLQIwgkrCNGEEFPAEVSFSGW 258
                 67888889*****************************************98644.57777777777777777777777777777************999 PP

                 EETTEEEEEEEEEEEES CS
         PAS  97 rdaggeilgflgvlrdi 113
                 r+++++  ++ +++rd+
  EHU02063.1 259 REGEER--YVGMIIRDV 273
                 999888..*******97 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.27   6.1e+02      40      75 ..     123     159 ..     107     168 .. 0.75
   2 !   44.3   0.0   7.8e-15   1.8e-11       4     109 ..     169     277 ..     166     278 .. 0.97
   3 ?   -1.5   0.0       1.3     3e+03      42      67 ..     290     316 ..     283     320 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
       PAS_4  40 laellpeedaarleralrrvlegeepiefleelll.p 75 
                 ++  +++ d+++l +  + v++  e+++++  ++   
  EHU02063.1 123 PRPAMSPTDRQNLTDLAALVMDRMEVHRMEVLRHAsQ 159
                 44445556999****99*****999999988777643 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 7.8e-15
       PAS_4   4 lpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.....pgeerhyelrllPlrdesGevig 97 
                 +pda+++ d +  ++++N+aa  +fg+++ e++Gk +a l pe++++++++ l+r+   +++i  + +l       +gee + e++++ +r  +Ge + 
  EHU02063.1 169 SPDAIICTDLNRGITFWNPAATNMFGYDASEMMGKYVAGLIPERCQTDYRNELDRLEHDDDAIAVPRTLQIwgkrcNGEEFPAEVSFSGWR--EGEERY 265
                 8******************************************************************9999*******************5..5***** PP

       PAS_4  98 vlvisrDiTerr 109
                 v +i+rD+T r+
  EHU02063.1 266 VGMIIRDVTLRY 277
                 *********987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
       PAS_4  42 ellpee.daarleralrrvlegeepie 67 
                 ++l+   ++ +++++l ++ e++ p++
  EHU02063.1 290 DMLTRLaSRSAFMTQLSKLTESGVPYT 316
                 555555689999999999999998876 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   3.2e-13   7.3e-10       4     129 ..      16     142 ..      13     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3.2e-13
                 HHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE.TTEE CS
         GAF   4 elldtvveelrellgadrvalylpdydGlhydipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn.dgel 101
                 e++d+++  +++l+ +  + + l d+    ++   +++ ++++    +c ++l+++ +l++pd+ +dprf++  ++ +l+ + ir +++vPl+  dg+ 
  EHU02063.1  16 EAFDRLTILAARLFSVPVAFVSLIDEKRQFFKSRYGLQITEISRSVAFCHHTLESDSILCVPDALNDPRFCN--SPLVLGYPYIRFYAGVPLITpDGHR 112
                 677888888888888888888773444432234445555777778889************************..99999999999********99**** PP

                 EEEEEEEE..SSSCSHHHHHHHHHHHHHHH CS
         GAF 102 wGllvlhn..psppftreelellqvladqv 129
                 +G+l+l++  p+p  ++ +++ l+ la++v
  EHU02063.1 113 IGTLCLTDnhPRPAMSPTDRQNLTDLAALV 142
                 ********7777788*******99999876 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.8e-11   6.3e-08       2      64 ..     161     222 ..     160     226 .. 0.79
   2 ?   -2.0   0.0       1.8     4e+03      14      29 ..     317     331 ..     312     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.8e-11
       PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGysadlkgellgqllpvlrplle..daeqlld 64 
                 rl+a+  +spd+i+ +d + + i+++N+aa  ++Gy+   +++   +++ +l p+++  d++ +ld
  EHU02063.1 161 RLEAISVTSPDAIICTDlNRG-ITFWNPAATNMFGYD--ASEMMG-KYVAGLIPERCqtDYRNELD 222
                 67777779*********7667.*************99..666555.88888888887788777764 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
       PAS_8  14 iavvdlgdrivdvNqa 29 
                 ++++dl+  + +vN++
  EHU02063.1 317 LLMTDLDS-FKEVNDT 331
                 66789999.9999986 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   4.2e-09   9.4e-06       1      50 [.     287     332 ..     287     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.2e-09
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindty 50 
                 a +D lT+L++R+++ ++l+++ ++      ++++l+ dld Fk++ndt+
  EHU02063.1 287 ASLDMLTRLASRSAFMTQLSKLTESG----VPYTLLMTDLDSFKEVNDTL 332
                 578****************9998877....6899**************95 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.8e-05      0.13       2      24 ..     183     205 ..     182     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.8e-05
       PAS_3   2 iyvserveeilGyspeellgkve 24 
                 ++++++  +++Gy+++e++gk+ 
  EHU02063.1 183 TFWNPAATNMFGYDASEMMGKYV 205
                 79*******************43 PP

>> DUF1040  Protein of unknown function (DUF1040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.9e-05      0.13      21      63 ..     284     326 ..     273     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.9e-05
     DUF1040  21 kdlnllqllqklaeeagfegeleeltddvliyhlkmresdkee 63 
                 ++l  l++l++la+ ++f  +l++lt+  + y l m + d+ +
  EHU02063.1 284 CELASLDMLTRLASRSAFMTQLSKLTESGVPYTLLMTDLDSFK 326
                 689999******************************9998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 2912.67
//
Query:       EHU02064.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU02064.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU02064.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU02064.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU02064.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU02064.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU02064.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU02064.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU02064.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU02064.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU02064.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU02064.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU02064.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU02064.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU02064.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU02064.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU02064.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU02064.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2340.81
//
Query:       EHU02065.1  [L=349]
Description: putative esterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-18   68.0   1.2    1.6e-17   64.4   1.2    2.2  1  Patatin         Patatin-like phospholipase
  ------ inclusion threshold ------
       0.24    9.8   0.0       0.31    9.4   0.0    1.1  1  Lys-AminoMut_A  D-Lysine 5,6-aminomutase TIM-barrel domain of


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   1.2   1.7e-21   1.6e-17       1     203 [.      27     195 ..      27     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 1.7e-21
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 Lv +GGG rg+f++g+l +++ +++  f ++ G+SaGA + +++ +g++  a +   r ++++++fd           ++ r ++l++ ++l d +  +
  EHU02065.1  27 LVCEGGGQRGIFTAGVLDEFQRAKFNPFQLLLGSSAGAQNLSAYVCGQPGYARRVITRYTTSKLFFDPV---------RFLRGGNLIDLDWLIDITRSE 116
                 899******************************************************************.........677777777777766666666 PP

     Patatin 100 ellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglf.ppvsldgelyvDGGilsN 197
                  +l+  +++ ++  +s r + +                             ++ + ++  +++ + +d++ aSsa+Pg++   v+l+g  y+DGG+++ 
  EHU02065.1 117 FPLA--MTSAETLFASGRQFYM------------------------CACRSDDYAPSYFAPTASNWLDIIKASSAIPGFYrLGVDLEGISYLDGGVSDA 189
                 6666..4444444444444444........................44567788888888889*****************999**************** PP

     Patatin 198 vPilaa 203
                 +P+++a
  EHU02065.1 190 IPVREA 195
                 ***987 PP

>> Lys-AminoMut_A  D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   3.5e-05      0.31     161     196 ..     188     222 ..     183     255 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 3.5e-05
                     HHHHHHHHHHTT-SEEEE---TTGGG-SS---S--S CS
  Lys-AminoMut_A 161 dvvqakaaarqGadviavirstgqslldyvPyGatt 196
                     d +  + aa++Gad i vir+    ++d vP   t+
      EHU02065.1 188 DAIPVREAAKRGADTIVVIRTVPSQMFD-VPRWVTR 222
                     6666789**************9998988.6766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2724.61
//
Query:       EHU02066.1  [L=257]
Description: putative DNase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-65  220.8   0.0    2.2e-65  220.6   0.0    1.0  1  TatD_DNase      TatD related DNase
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.18   12.0   0.0    1.3  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
       0.14   12.4   4.0        4.9    7.5   0.5    2.8  2  DUF3040         Protein of unknown function (DUF3040)


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   0.0   3.7e-69   2.2e-65       1     255 []       4     255 ..       4     255 .. 0.97

  Alignments for each domain:
  == domain 1  score: 220.6 bits;  conditional E-value: 3.7e-69
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEEET- CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGLDyy 99 
                 +D+HcH+d++ f + ++  l++a++agv++++v++++  +++ v +la+++   +ya+lG+HP   ++++e+ l++l++l + + +k va+GeiGLD+ 
  EHU02066.1   4 VDTHCHFDFPPFVDAADVSLRQAADAGVEKIIVPSVEAGRFDLVCQLARQHRA-LYAALGLHPIVTEQHEEQHLAQLESLLQQRPPKLVALGEIGLDL- 100
                 7********99988888888******************************998.*********99999999999******88899*************. PP

                 CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCSEEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHHHHHHHHS-GG CS
  TatD_DNase 100 sreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeakakvvlHsfsgsaeeakkflklgyyislsglltfknakelrelvkavpld 198
                 +r++ + ++q  ++++ql+lAk+++lp+++H+r+++++l   l++ a ++ ++v+H f gs ++a++f+klgy i+++g++t+ +a+++r++++++pl+
  EHU02066.1 101 YRDDPQFDKQTCFLDAQLKLAKRYDLPVILHSRRTHDQLALHLRRQAVPR-RGVVHGFAGSLQQAQAFIKLGYAIGVGGTITYPRASKTRQTIARLPLS 198
                 8999******************************************9888.9*********************************************** PP

                 GEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  TatD_DNase 199 rlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlfk 255
                 +lL+ETDaP++  + y+g++n+p+    v ++l+el++++++e+a+++++N+ +lf+
  EHU02066.1 199 SLLLETDAPDMPLNGYQGQPNRPERAVLVWQVLCELRDEPPAEIADALWHNSHALFS 255
                 ******************************************************995 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.1e-05      0.18      45     104 ..     118     177 ..     111     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
                     HHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-T..T--HHHHHHHHHHHCTT- CS
  Asparaginase_C  45 lkeakargivvvatsqcpsgsvsnseyeagkelerlgvisad..dmtpeaarikLmlllgkg 104
                     lk ak+ + +v++ s+  + +++ +    +++ +r gv+ +    ++ ++a ikL +++g g
      EHU02066.1 118 LKLAKRYDLPVILHSRRTHDQLALH--LRRQAVPRRGVVHGFagSLQQAQAFIKLGYAIGVG 177
                     6778888*****************9..4899999*****87677**************9977 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5   0.00081       4.9       5      27 ..      70      92 ..      68      97 .. 0.91
   2 ?    6.5   0.1    0.0017       9.9      11      30 ..      93     131 ..      91     182 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00081
     DUF3040  5 ehEqrvLeeiEraLaaeDPklaa 27
                +hE + L+++E+ L++  Pkl+a
  EHU02066.1 70 QHEEQHLAQLESLLQQRPPKLVA 92
                79******************987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0017
     DUF3040  11 LeeiEraLaaeDPklaaal...................r 30 
                 L ei  +L+++DP++ ++                    +
  EHU02066.1  93 LGEIGLDLYRDDPQFDKQTcfldaqlklakrydlpvilH 131
                 889999*********998866666666555444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2099.63
//
Query:       EHU02067.1  [L=259]
Description: 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-48  163.8   1.3    5.6e-48  163.6   1.3    1.0  1  DeoC      DeoC/LacD family aldolase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   1.3   3.1e-52   5.6e-48       2     232 ..      11     243 ..      10     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 3.1e-52
                 EEEEECCSHHHHHHHHCTSSHHHHHHHHHHHHHHGG..GSSEEEEETTTHHHHHHCSCT......TSEEEEETECSSCCTTSTTEEEETTCHHHHHHHT CS
        DeoC   2 vilavDqrvankddtasaqneqledlkalvkealtp..gasavlldpgviasaskeyak......diallvkldkgtyllkskqrdvdevasveeakal 92 
                 +++++D++++n+ddt++       ++ al+++a++p  +++a++++p++i+ a+k++ +      +ia+++++++g+++++++      +a++++a+a+
  EHU02067.1  11 ALKLMDLTTLNEDDTDE-------KVIALCHQAKSPvgNTAAICIYPRFIPVARKTLREqgtpdvRIATVTNFPHGNDDIEIA------LAETRAAIAY 96 
                 5789*************.......***********************************************************......********** PP

                 T-SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHHHHT..EEEEEE.EEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHHH CS
        DeoC  93 GAdavkvvvyyradgseeeqqklaeikrvkeacheeg..lplile.lylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevfk 188
                 GAd+v+vv++yra++++++q  ++ +k++k ac+e+g  l++i+e ++l++ea         l+++A+++++++GaD+iK++++k+ vnat+e+a++++
  EHU02067.1  97 GADEVDVVFPYRALMAGNAQVGFDLVKACKTACAEAGvlLKVIIEtGELKQEA---------LIRQASEIAIDAGADFIKTSTGKVPVNATPEVAQIMM 186
                 **********************************7764388999999999999.........************************************* PP

                 HHHHCHSSTE...EEEETTS.SHHHHHHHHHHHHHHHTH.........CEEEESHHH CS
        DeoC 189 dvikaapvpg...vvlsGGv.seedfletvedAvkeaga.........sGvlsGRai 232
                  vi++  v +   ++++GGv ++ed +  ++ A    ga         +G++s++a 
  EHU02067.1 187 SVIRDKGVKMqvgFKPAGGVrTAEDAAVYLQLADDTLGAdwadarhfrFGASSLLAN 243
                 *********7788*******6555555555555545566899999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2112.69
//
Query:       EHU02068.1  [L=442]
Description: thymidine phosphorylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-51  173.7   0.9    7.4e-51  173.2   0.9    1.2  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    4.7e-24   83.8   0.3    9.6e-24   82.8   0.3    1.6  1  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
    5.8e-19   67.7   0.1    1.3e-18   66.6   0.1    1.7  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.9   1.2e-54   7.4e-51       2     252 ..      79     309 ..      78     310 .. 0.97

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 1.2e-54
                      TTBEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTS.T--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHH CS
  Glycos_transf_3   2 kdlvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLeal.gvnleltpeeveklleevgvgflfapeyhkamkhvapv 94 
                      +++vD+++TGG+g+ t   S++++++vAa+G +++++++r++++++G++D+Lea+ g+++  +++++++ +++vgv++++++++++++++ +++
       EHU02068.1  79 GPVVDKHSTGGVGDVT---SLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLEAIpGFDIFPSDDHFRQTIKQVGVAIIGQTNSLAPADKRFYA 169
                      579*************...*************************************************************************** PP

                      HHHHTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCSTSHHHHHHHHHHHHHHHH.TTEEEEEEEEEGSSTSSSEE CS
  Glycos_transf_3  95 rrelgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhgdGldevsllakttvaelk.dgeiteytlepedfglkrae 187
                      +r++++ Tv+++  PLi++        ++++k+lae+l++++++++v++++++++   +  + la+++v  ++ +g +t++ l+++++ l++++
       EHU02068.1 170 TRDITA-TVDSI--PLITA--------SILAKKLAEGLDALVMDVKVGSGAFMPT--WEASESLAQAIVGVANgAGCRTTALLTDMNQVLASSA 250
                      ******.*****..*****........****************************..************************************* PP

                      ESHHHHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSHH CS
  Glycos_transf_3 188 lealeggepkenaeilkavlegkksaakrdlvllnagaalvlagkadslkegvakaeevidsGkA 252
                      ++ale+   +e++++l+++ ++++    +d++l++++++l+  + a +  ++++++++v+d+GkA
       EHU02068.1 251 GNALEV---REAVRFLTGEQRNPRL---LDVTLALCSEMLISGKLAANETDAREQLLAVLDNGKA 309
                      ******...**********444444...7***********************************9 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.3   1.6e-27   9.6e-24       1      74 [.     350     423 ..     350     424 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.6e-27
                 EEEEE-HHHHHHHHHHTTTSBSSTTS---TT-EEEES--TT-EEBTTSEEEEEEESSSCHHHHHHHHHHHHEEE CS
      PYNP_C   1 yvseidareiGlaaveLGAGRakkeDpidlavGielhkklGdkVkkGeplatiYankeekleeavkklkkaiki 74 
                 yv+++d+r++G+a+v++G+GR++++D id++vG++ ++ lG++V++ +pla+i+a++e+++++a++ +k+ai++
  EHU02068.1 350 YVTQMDTRALGMAVVAMGGGRQRASDAIDYSVGLSDMITLGERVDASRPLAVIHASSEAHWQQAAAGVKAAITL 423
                 89*********************************************************************986 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.1   2.2e-22   1.3e-18       2      63 .]       6      67 ..       5      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 2.2e-22
                     HHHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHS CS
  Glycos_trans_3N  2 diikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmresg 63
                     +ii+k+rdg+ Lt++eirf+i+g+ +++v++ qiaA++m +++  ++  E +al+ Amr+sg
       EHU02068.1  6 EIIRKKRDGQALTEDEIRFFINGVRDNSVSEGQIAALAMTIYFHDMSLPERVALTMAMRDSG 67
                     8***********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3571.65
//
Query:       EHU02069.1  [L=407]
Description: phosphopentomutase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-35  121.5   0.0    6.5e-35  120.7   0.0    1.4  1  Metalloenzyme  Metalloenzyme superfamily
  ------ inclusion threshold ------
      0.067   12.8   0.0      0.096   12.2   0.0    1.2  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos


Domain annotation for each model (and alignments):
>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   7.3e-39   6.5e-35       1     246 [.       2     397 ..       2     399 .. 0.87

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 7.3e-39
                    -EEEEEEETTBB----GGGTT.........HHHS-................-HHHHHH.........HHH........SEEEEEESSSTT----HH CS
                    xxxxxxxxxxxxxxxxxxxxx.........xxxxx................xxxxxxx.........xxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme   1 kkvvlvvlDGlGeapadelna.........ihvAk................tPtldkL.........kkeaPerw.likahgtavglpeddmgnse 61 
                    k+++++vlD++G++++++++          +h+A+                +P++ +L         +   P       +   a++++ + +++++
     EHU02069.1   2 KRAFIMVLDSFGIGASKDADKfgdtgsdtlGHIAEacfngkadqgrkgplhLPNMTALglgkaaelsTGRFPPGLdPEAEIKGAYAYASERSSGKD 97 
                    6899************6666555677789999999*******************************988889998777888899************ PP

                    ..HHHHHH........................................................................................ CS
                    ..xxxxxx........................................................................................ RF
  Metalloenzyme  62 ..vgHlel........................................................................................ 67 
                      +gH+e+                                                                                        
     EHU02069.1  98 tpSGHWEIagvpvlfdwgyfsdkensfpqelldklveraelpgylgnchssgtvildqlgeehmasgkpifytsadsvfqiacheetfgldrlyal 193
                    999********************************************************************************************* PP

                    ...................................HHHHTT-----EEEEEE..EE-S---SSHHHHHT--EEEE--SHHSTT--HHHHHHHHHHH CS
                    ...................................xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 ...................................lrisetvkfahvtffwn..ggrsgyfnpleereeipsdtvitfdlqpemkavevaekalda 126
                                                        r    v+++  t + +    + g++ ++ +  +i ++++it ++ +++   +++++++++
     EHU02069.1 194 ceiareelteggynigrviarpfvgdkagsfertgNRHDLAVEPPSPTMLKKlvDEKGGHVISVGKIADIYAEQGITKKV-KATGLDALFDATIQE 288
                    ****9988888888888888888888777777777333333333333333331122233444445556677777777777.5678899******** PP

                    H.CC.-S..EEEEEE-HHHHH.HHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS........-----EEEEEESTT---- CS
                    xxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 127 ilsgkfd..lvvvniknaDmv.GHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdkqplTsHtlepVPilivgkglapd 219
                    + +++ d  +v++n++++D+  GH++d+++++ ++e +D++++e+++ ++++d il++tADHg+++++++      T+Ht+e++Pili+g++++p 
     EHU02069.1 289 M-KTAPDqaIVFTNFVDFDSTwGHRRDVAGYAGGLELFDRRLPELMELVKEDD-ILILTADHGCDPTWQG------TEHTREHIPILIYGPKVEP- 375
                    *.55577689******************************************9.****************......******************9. PP

                    S--SSHHHHTT-TTEEEEGGGHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 220 kvkegakfrekggLanvaatllnllgl 246
                        g  +  ++++a++++t+++++ l
     EHU02069.1 376 ----G-SLGYRDTFADIGQTIAHYFDL 397
                    ....3.45569***********99976 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.1e-05     0.096     197     237 ..     318     353 ..     259     365 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
                   HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 197 vedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                    +  l+  D+ + +L+e+++e+    +  +il++DHG  ++
    EHU02069.1 318 YAGGLELFDRRLPELMELVKED----DI-LILTADHGCDPT 353
                   56789999**************....77.9*******9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3289.11
//
Query:       EHU02070.1  [L=237]
Description: purine-nucleoside phosphorylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-40  137.4   1.7    5.1e-40  137.2   1.7    1.0  1  PNP_UDP_1  Phosphorylase superfamily
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.23   11.4   0.0    1.5  1  YidD       Putative membrane protein insertion efficiency fac


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   1.7   5.7e-44   5.1e-40       1     214 [.      15     218 ..      15     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 5.7e-44
                 CEEEEESSHHHHHHHHHH.EEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEE CS
   PNP_UDP_1   1 kiaiivgspgevellaes.pleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddai 98 
                 +++++ g+p +++ +ae+   + +++ ++ rg   +tGt+kg+++++  +G+G p+ + + + +l+ efgvk+iir+G++G+++pd+k+ D+vi   a 
  EHU02070.1  15 DVVLMPGDPLRAKHIAETfLDDAVEVNNV-RGMLGYTGTYKGRKISVMGHGMGIPSCS-IYAKELITEFGVKKIIRVGSCGAVRPDVKLRDIVIGMGAS 111
                 5899**************66666667666.****************************.**************************************98 PP

                 ESSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEE CS
   PNP_UDP_1  99 nfdgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaeteaelrllrrlgadaveMEtaavaqlArelgipfaairvv 197
                  ++  +++           + ++a ad ++++ ++ aa+ lg++ ++G + +ad fy   ++    ++++g+  veME+a ++ +A+e+g++++++++v
  EHU02070.1 112 TDSKVNRM-------RFKDHDFAAIADFDMVRNAVDAAKNLGVEARVGNIFSADLFYTPDPQMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTMCTV 203
                 88888885.......4566677778************************************************************************** PP

                 EETTTBETTCTCH.HCC CS
   PNP_UDP_1 198 sdlaaggadaeatheev 214
                 sd++    +++ t +e 
  EHU02070.1 204 SDHIRT--HEQTTAAER 218
                 **7666..222222222 PP

>> YidD  Putative membrane protein insertion efficiency factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.23      25      43 ..      67      85 ..      56      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
        YidD 25 yptCSeYaleaiekyGllk 43
                +p+CS Ya e i+++G+ k
  EHU02070.1 67 IPSCSIYAKELITEFGVKK 85
                59**************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1782.94
//
Query:       EHU02071.1  [L=627]
Description: hypothetical protein CKS_0573 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-69  234.8   0.0    1.7e-69  234.4   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    2.2e-45  155.2   0.0    5.1e-45  154.0   0.0    1.6  2  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.0   1.9e-73   1.7e-69       3     306 .]     269     607 ..     267     607 .. 0.94

  Alignments for each domain:
  == domain 1  score: 234.4 bits;  conditional E-value: 1.9e-73
                     EEEEETTT-BEEEEEEESE-TTTHHCC.............TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS...E CS
  Transpeptidase   3 avvldaktgevlamaskpsydpnakvg.............kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqs..i 82 
                      +v d+ +g+vlam+s+psydpn +v+             kn pl nr++q+ y+P+St+K+++a+ al  +vi+p++t++  + +  +g+   +
      EHU02071.1 269 LLVEDPHDGSVLAMVSSPSYDPNPFVKgisyqaykkllqdKNLPLINRVTQGLYPPASTVKPYMAMSALLTHVITPQTTFFGGPTWTLPGTDrrY 363
                     6789*********************************************************************************999999999* PP

                     CTCCCC-SSSSEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSH.........HHHHHHHHTTT...SBB CS
  Transpeptidase  83 kdweqdnkgsegitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkw.........legatisfgiG...ltv 164
                     +dw+++   ++++++++a+e+S +t+f+++a  +g d++  +l+kfg+G++tgidl +e +G +p r w         ++g+t+s+giG   + +
      EHU02071.1 364 RDWKKSG--HGTLDVTKAIEESADTFFYQVAFMMGIDRIHTMLSKFGYGQSTGIDLNEEYNGlLPSRDWkmkvhkkpwYQGDTVSVGIGqgyWIA 456
                     ******5..8999*************************************************8888899************************** PP

                     -HHHHHHHHHHHHTTTEEE--BSEEEEEECTTEEEESS-EEEEE..-S-HHHHHHHHHHHHHHHHCTTTTGCG..TCTTS--EEEEEEEEECSSS CS
  Transpeptidase 165 tplqlaqayaaiangGklvkPhlvkaivdpdgvrkvkpkelnkl..pisketaekvkeglkgvvsrgsgtata..avegykvagKTGTAevagkk 255
                     tp+q+++a+ a++n+G + +Phl+++ +  + v+  +pk ++ +  + ++ +++ v++++ g +++++gt+++  +++ y +a+K+GT +v++ k
      EHU02071.1 457 TPIQMVKALVALINNGRVIAPHLLEKSQLGNHVQLYQPKLPQAQigDPHSPYWSLVRHAMFGMANAPNGTGYKyfHTAPYGIAAKSGTSQVFSLK 551
                     ************************98888777666666655555114455689****************************************** PP

                     TTSEEEEEE.......EEEEEEEESTTS-SEEEEEEECTCSSSSSCCHHHHHHHHHHH CS
  Transpeptidase 256 gngkkegak.......iswfvgyapadnpkyavavlieqpkeaaggkaaapiakkile 306
                     +n++++++        +++++++ap ++pk+ava+++e+++  ++g  aap+++++l+
      EHU02071.1 552 QNQTYNAKMipvrlrdHTFYTAFAPFNDPKVAVALILENGG--SEGVLAAPVMRQLLD 607
                     ***999877********************************..***********9985 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.0   5.6e-49   5.1e-45       2     179 ..      60     235 ..      59     236 .. 0.98
   2 ?   -3.1   0.0      0.98   8.8e+03      67      98 ..     282     312 ..     274     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 5.6e-49
                 .EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT- CS
   PBP_dimer   2 ipapRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGi 100
                 i ++RG I+ rng +L+ n++ y++t+tp k+++ kal  +++l  l++    l++e++e  ++   + ++ykpv ++e++++eevar++ n+ ++ G+
  EHU02071.1  60 IAPTRGLIFVRNGIPLVRNVTWYDITVTPYKVEDMKAL--LQELTPLVD----LTPEDIERFQHDLHQTSRYKPVILKEELTDEEVARFSVNQFRFTGV 152
                 689*********************************99..999999998....********************************************** PP

                 EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCH....TCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCEEE CS
   PBP_dimer 101 nievepkRyYpkgelaahvlGyvgkiteeelekykek....gyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrileel 179
                 +i++ ++R Yp+g+ +ahv+Gyv+ki+++++++ +++    +y ++ +iGk+G+E++yE+ L+Gk G+++v+vd++Gri+++l
  EHU02071.1 153 SIDTYQDREYPYGADLAHVIGYVSKINDNDYKRLNAEgiaeNYAADHNIGKQGIEGYYESLLHGKPGYQEVEVDNHGRIVRVL 235
                 *******************************************************************************9876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.98
                 CCTSSTTSCECCCCCEECHHHCCCHHHHHCST CS
   PBP_dimer  67 knsykaykpvviaediseeevarikenakdlp 98 
                 + s  +y p ++ + is++ ++++ + ++  p
  EHU02071.1 282 MVSSPSYDPNPFVKGISYQAYKKLLQDKNL-P 312
                 667788999999999999999998876653.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 5184.66
//
Query:       EHU02072.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU02072.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02072.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02072.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02072.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02072.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02072.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU02072.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02072.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02072.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02072.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02072.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU02072.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02072.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU02072.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02072.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU02072.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02072.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU02072.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02072.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU02072.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02072.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU02072.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02072.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02072.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02072.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02072.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02072.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02072.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02072.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU02072.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU02072.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU02072.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU02072.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU02072.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02072.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02072.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.49
# Mc/sec: 3217.38
//
Query:       EHU02073.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02073.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 892.67
//
Query:       EHU02074.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02074.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02074.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02074.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02074.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 883.50
//
Query:       EHU02075.1  [L=128]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-39  134.7   0.1    1.4e-39  134.5   0.1    1.0  1  DUF1987        Domain of unknown function (DUF1987)
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.038   13.9   0.0    1.4  1  Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
      0.058   13.1   0.0      0.062   13.0   0.0    1.1  1  DUF4874        Domain of unknown function (DUF4874)
      0.077   13.4   0.0       0.12   12.8   0.0    1.3  1  FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2


Domain annotation for each model (and alignments):
>> DUF1987  Domain of unknown function (DUF1987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.1   3.1e-43   1.4e-39       2     119 ..       7     123 ..       6     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 3.1e-43
     DUF1987   2 eatkstPevdfdaetgrleisGesypenaaeFYepvldwleayleeekkkkievnlkLsYfntssskalldllelLeeaaekgkkvevnWyydeededm 100
                 ++t++tP+v+fd++++r++++Ges+penaa+FY+p+ ++le++  +++ + +evn++LsYfn+ss+k+l+ l++ ++++a++g ++ +nW+yd ed+  
  EHU02075.1   7 TPTECTPAVEFDFAAQRFSLRGESWPENAAAFYRPLQSALESWQPQAS-QLTEVNIDLSYFNSSSTKMLFGLFDQFNRLAQNGCEIVLNWFYDAEDDVS 104
                 579*****************************************9998.9************************************************* PP

     DUF1987 101 lelgeefkedfealpfeli 119
                 +e+gee++ df+al+++l+
  EHU02075.1 105 EEFGEELSLDFTALTVTLH 123
                 *************999887 PP

>> Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   8.5e-06     0.038      64     100 ..      21      58 ..      13      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.5e-06
  Helicase_IV_N  64 qkvvrlhGlpwee.tqqfaqtllssyqqWskeqvqala 100
                     ++++l G +w+e +++f++ l+s++++W+ +++q ++
     EHU02075.1  21 AQRFSLRGESWPEnAAAFYRPLQSALESWQPQASQLTE 58 
                    6799*******874789****************99765 PP

>> DUF4874  Domain of unknown function (DUF4874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.062      17      83 ..      43     106 ..      18     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
     DUF4874  17 aselekvrkeeevtlvlleiyLkdfrdkdlseealdklekiletlrkagkkvilRfaYdtegkatee 83 
                 +s le+++  +  +l+ ++i+L+ f+++  s++ l  l +++++l ++g++++l   Yd e++  ee
  EHU02075.1  43 QSALESWQP-QASQLTEVNIDLSYFNSS--STKMLFGLFDQFNRLAQNGCEIVLNWFYDAEDDVSEE 106
                 456777777.899************998..68899999*********************99555444 PP

>> FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05      0.12      29      57 ..      36      64 ..      31      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
  FAA_hydro_N_2 29 seiaptlqaaLdnWdevepaLeelyeaLn 57
                    ++   lq+aL++W+  +++L+e+  +L+
     EHU02075.1 36 AAFYRPLQSALESWQPQASQLTEVNIDLS 64
                   556678*****************988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 940.35
//
Query:       EHU02076.1  [L=188]
Description: hypothetical protein CKS_0580 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1316.39
//
Query:       EHU02077.1  [L=409]
Description: serine phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-25   88.0   0.0    1.1e-24   87.4   0.0    1.3  1  SpoIIE    Stage II sporulation protein E (SpoIIE)
    1.3e-07   31.9   0.1     0.0018   18.7   0.0    2.3  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0   1.3e-28   1.1e-24       3     188 ..     205     405 ..     203     409 .] 0.91

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 1.3e-28
                 TEEEEEEEECSSSSHHHHHHHHHHHHHHHHHH.HTTTS.HHHHHHHHHHHCHCTTSTT..........TTCEEEEEEEETTTTEEEEEEESSSSEEEEE CS
      SpoIIE   3 grlalvvgDvvGhGleAalimgllrsalrela.tagle.paevlkrlnralardleee.........erfaTavlavydpstgkleyanaGhpppllvr 90 
                 +++++v++D++GhG++ a +++ l+sal++++ +a+l+ pa++l++ln+ +++ l++          + ++ a+++ +d++ ++l++a+a  +  +l +
  EHU02077.1 205 NGWLAVIADCTGHGIPGAFMTVILQSALENALrEADLQaPARILHALNHHIKQTLGQLnasqqtslsNDGCDAIVLSVDTELHQLRWASARTQAFMLSN 303
                 6799**************************9987777789***********888888899999999999*********************666666666 PP

                 TTSTEEEEE--SS--TTTSSS...T-EEEEEEE--TTEEEEEESCCCCSSS.HHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH.HTTSSSSS- CS
      SpoIIE  91 pdggtklllastglplGilpe...adyetaelelepgdtlllyTDGvtEar.dsdgelfgkerllallasaegesleelldalveelle.lgsgeleDD 184
                    ++ + l +  + +G ++     d+++++l ++ gd+l++ TDGvt+++  +++ +fg++r   ll + ++ +++el+ a++++ l+ +g++ ++DD
  EHU02077.1 304 I-SNEIIALSQDRVGVGYTDTpedYDWPEQSLAFNRGDMLFVLTDGVTDQPgGERNIMFGNKRIQSLLMRYQHLPMAELSLAFQQDYLSwQGNQARRDD 401
                 6.8999999999999***988999***************************98889999999999999999******************99999***** PP

                 EEEE CS
      SpoIIE 185 itll 188
                 +t +
  EHU02077.1 402 VTWF 405
                 *976 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     2e-07    0.0018       8      49 ..      25      66 ..      18      73 .. 0.90
   2 !   10.9   0.0   5.3e-05      0.48       4      55 ..      89     143 ..      86     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2e-07
                SCEEEETTSBHHHHHHHHHHHT..SSEEEEEETTTBEEEEEEHH CS
         CBS  8 dvvtvppdttleealelmrekg..vsrlPVVdedgklvGivtlr 49
                +v++v+p+t+ + ++ l++e++  + +lPVV e+gk+ G++ ++
  EHU02077.1 25 EVPFVSPETDNRAVMALFAEHKdlI-GLPVV-ENGKPFGMINRH 66
                6789**************9988899.*****.9*******9876 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.3e-05
                 HSBSSCEEEETTSBHHHHHHHHHHHT....SSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS   4 imtrdvvtvppdttleealelmrekg....vsrlPVVdedgklvGivtlrDllral 55 
                 +m + +++++ + tle ++++ + +g     +++ ++ e+g+++Gi    Dl+r +
  EHU02077.1  89 FMDKFPLVIDVENTLESVAQQVVANGdksvADGF-ILTENGHYIGIGLGIDLIRRV 143
                 7999*****************87666666557**.8779*******9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2853.96
//
Query:       EHU02078.1  [L=192]
Description: hypothetical protein CKS_0583 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1369.70
//
Query:       EHU02079.1  [L=214]
Description: hypothetical protein CKS_0585 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-08   32.3   3.5    4.6e-07   29.9   3.4    2.1  1  Pectate_lyase_3  Pectate lyase superfamily protein


Domain annotation for each model (and alignments):
>> Pectate_lyase_3  Pectate lyase superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   3.4   2.6e-11   4.6e-07       6      99 ..      12     100 ..       8     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.6e-11
                      GGT---EEEEE-HHHHHHHH......HTSS-EEE-SEEEEESS-EEE-SSEEEEES-TTTEEEEE-TT-SS--SEEES-TTT-..-EEEEEEEE CS
  Pectate_lyase_3   6 dyGakgDGvtDdtaaiqkaiscasatttgavVYfPaGtYlvsspiilksgvqLvGdgngrpvlkaaaafvgaglidgdpyvsggsealiatnnf 99 
                      d G+ +D + D +  + + +  + +t++++ +YfPaG Yl+s+ i+lks   L Gd  + +v ++  ++++a ++ + +y+++++ +l+ +n +
       EHU02079.1  12 DMGIYPDTSEDLSEKLIALL--NISTQQKKGIYFPAGVYLFSQDIQLKSFNSLKGDV-TGTVFRG-INSKRAVMFGDGQYGNTVA-NLTIENIL 100
                      88999***************..9**********************888888888888.5555555.4456666666666664421.22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1849.12
//
Query:       EHU02080.1  [L=69]
Description: hypothetical protein CKS_0586 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 537.94
//
Query:       EHU02081.1  [L=424]
Description: major facilitator superfamily (MFS) transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-26   91.5  27.5    1.1e-16   60.8   6.0    2.0  2  Sugar_tr     Sugar (and other) transporter
    5.1e-24   84.9  47.3    6.4e-17   61.5  19.4    2.1  2  MFS_1        Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.6    9.6   8.3         15    6.4   0.5    3.7  3  HKR_ArcB_TM  Histidine kinase receptor ArcB trans-membrane do


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   6.0   1.9e-20   1.1e-16       3     188 ..      22     211 ..      20     224 .. 0.87
   2 !   37.5  13.1   2.1e-13   1.3e-09     241     409 ..     226     392 ..     213     417 .. 0.75

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.9e-20
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 + +++g  l+++d++v+g+f++ ++ a++ + + s+s      +l+  ++++ ++++ +G++++g  +dr GRkk+ll ++ l++ g++++ + +g+  
  EHU02081.1  22 FATCIGNALEWFDIAVYGFFASYIAHAFFPTRDPSVSI-----LLTFGSFGVSFLIRPLGAIVLGNYADRHGRKKALLLSINLMMLGGAVITFMPGYds 115
                 5678899******************8888888888863.....467889999999*************************9999999999999999988 PP

                 ...SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHH.HHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 100 ...nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlait.fGilvaaifglglnktsn.....adgwrillglqlvpallllill 188
                     +  +++++R++ G+++G++ + ++ ++ E  p+  R+a++  +q+a++ +  l+a+ fglgl k+       ++gwri++++ l++  l ++++
  EHU02081.1 116 iglMAPVLILLARLVQGFSAGGEFGSSTAFLVEHFPE--RKAFIASWQFATQgASTLMASAFGLGLTKILTeseiqDWGWRIPFAFGLLIGPLGIYIR 211
                 887888888999*********************9998..7778877888777256899********7776669**************99988877766 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 2.1e-13
                 .HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHH.TTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH. CS
    Sugar_tr 241 swkellssktvrqrlligvvlqifqqltGinaimyy.sptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgi 336
                 ++ +l++ ++ rq+ l+ +++ ++   t +n++++y +++ ++nl+l  s  +++t++ gv+ +v+t v  +  +r+GR + l++G+++ +i++++ + 
  EHU02081.1 226 DVAPLKRLFG-RQKELMLLAIGLMVISTAVNYMLNYvPTYATRNLHLPGSvaFTATLMAGVILTVVTPVMGLWAERIGRVP-LMWGSLILLIVTIYPA- 321
                 5677788877.8899999999999999****998883566899*******999*****************9********95.79*************8. PP

                 .HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHH..HHHHHHHHHHHH CS
    Sugar_tr 337 valllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwl..anflisllfpii 409
                  + l+v+ +    i ++++++ ++ l ++ + +vp v+ ++lfp+++R++++ai++++ ++    f+  ++   i
  EHU02081.1 322 -FKLVVSHT--TPITLVALVCWMALLKSIYFSTVPSVM-ADLFPMGTRASGMAISYNIAVTvfGGFAPLICSLLI 392
                 .55555553..577777788888888889999999666.***************998765311233322232222 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5  19.4   1.1e-20   6.4e-17       2     256 ..      25     287 ..      24     291 .. 0.76
   2 !   28.1  24.8   1.6e-10   9.4e-07      40     166 ..     282     414 ..     274     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.1e-20
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse.igllltl.....yalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa..ss....lw. 86 
                 +++ +l  ++++++g++++ ++a+++  + +  +++llt+      +l   +++++lG  +dr+Gr++ lll++ l+ lg+++++ ++   s     + 
  EHU02081.1  25 CIGNALEWFDIAVYGFFAS-YIAHAFFPTRDPsVSILLTFgsfgvSFLIRPLGAIVLGNYADRHGRKKALLLSINLMMLGGAVITfMPgyDSiglmAPv 122
                 6778888999999999999.8988877444434788777734333444458899999999********9999999999995666625344223344555 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepp 177
                 l+l++r++qG+ ag+ f ++ a++++ fp+ ++++  ++  a+ +++++++ ++g  l+  l         Wr +f +  +++ l+     +++++  +
  EHU02081.1 123 LILLARLVQGFSAGGEFGSSTAFLVEHFPE-RKAFIASWQFATQGASTLMASAFGLGLTKILTeseiqdwgWRIPFAFGLLIGPLG-----IYIRRHVH 215
                 6****************************8.6666666666666666677788888888888888888999**************9.....89999999 PP

       MFS_1 178 erkrkspkeeekgtgpaplvpawkallkdp.vlwillialllfffgfsglltllplylqevlgls...glllaglllallalv 256
                 e++ +++ +         ++p +k l+ ++  l++l i+l +++++++++l ++p+y+   l+l+   + ++a+  l+++ ++
  EHU02081.1 216 EPASFATHQP-------DVAP-LKRLFGRQkELMLLAIGLMVISTAVNYMLNYVPTYATRNLHLPgsvA-FTAT--LMAGVIL 287
                 9999988877.......6777.66666666244479999999999********************5421.2222..3333333 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.6e-10
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf..a..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigl.lsagfsl 132
                 + ++   v ++++G +++r+Gr ++++ +l+l++++ ++++f  +  ++ + +l++l + ++l  +++f+++ +++ad+fp   r++++++ +++++ +
  EHU02081.1 282 MAGVILTVVTPVMGLWAERIGRVPLMWGSLILLIVT-IYPAFklVvsHTTPiTLVALVCWMALLKSIYFSTVPSVMADLFPMGTRASGMAIsYNIAVTV 379
                 345566999***************************.8888655357999999*****************************98888887735567777 PP

       MFS_1 133 GailgpllggllasslgWrav..fyilaivsllafv 166
                    ++pl+ +ll+++ g +++  +y++a   l + +
  EHU02081.1 380 FGGFAPLICSLLITATGTSLApgYYLMAMSVLSG-L 414
                 7799*********999988877666665555544.3 PP

>> HKR_ArcB_TM  Histidine kinase receptor ArcB trans-membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.15   8.9e+02      26      58 ..     178     210 ..     160     214 .. 0.72
   2 ?    6.4   0.5    0.0026        15       4      55 ..     234     285 ..     230     295 .. 0.85
   3 ?    4.2   1.0     0.013        76      11      50 ..     313     352 ..     299     360 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
  HKR_ArcB_TM  26 illslllsgeveiedllrsilfgllsaPwvlYF 58 
                   l+++l ++e++      +++fgll+ P+ +Y 
   EHU02081.1 178 GLTKILTESEIQDWGWRIPFAFGLLIGPLGIYI 210
                  455666667777777788899*******99995 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0026
  HKR_ArcB_TM   4 LGtvrfSlllvlllivlalliqillslllsgeveiedllrsilfgllsaPwv 55 
                  +G+ +  +ll++ l+v++++++++l+++ +   +  +l  s++f+   +  v
   EHU02081.1 234 FGRQKELMLLAIGLMVISTAVNYMLNYVPTYATRNLHLPGSVAFTATLMAGV 285
                  6999999*********************999999999999999997655444 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.013
  HKR_ArcB_TM  11 lllvlllivlalliqillslllsgeveiedllrsilfgll 50 
                  ll+v++  ++ l+++ ++ ++l   v +  ll+si f  +
   EHU02081.1 313 LLIVTIYPAFKLVVSHTTPITLVALVCWMALLKSIYFSTV 352
                  3444445578999***********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.35
# Mc/sec: 3596.68
//
Query:       EHU02082.1  [L=473]
Description: M20 family peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-23   84.1   0.0    1.3e-23   83.8   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    3.6e-11   42.9   0.0    8.3e-11   41.8   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
        0.2   11.7   0.6         17    5.4   0.0    3.0  3  WYL            WYL domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   2.2e-27   1.3e-23       2     205 ..      90     451 ..      89     453 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2.2e-27
                    EEEES-BSSTTCGGGSSS...TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SS.EEEEEEESTTSSTTTHHHHHHHHHHTTTCESE CS
                    xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwtt...pfslteedGklyGrGaddmkggvlaalealralkdegikpkg.tivllfqpdEEggrgGakallegleerekvda 93 
                     ++H DvV  +++++w+    p++l eed+++y+rG++d+kg+    l+al+++ ++ +   g + +llf+  EE+++ G + l+++  +  k+d 
     EHU02082.1  90 SYGHGDVVF-GDDENWRAgltPWELVEEDDRWYARGSADNKGQHCVNLAALEQVFQARGGRLGfNCKLLFEMGEEISSPGLAQLCQQHGDLLKADL 184
                    59*******.55555*9999*******************************9876665555555***********998999999994333445555 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                    ++    ++++ l+    a++++                                                                          
     EHU02082.1 185 FV---ASDGPRLN----AVQPTlflgsrgavnfrltitardnayhsgnwggllsnpgtqlanaiaslvnaqgvlqvaalkpssltqqvrdilrqih 273
                    44...78899999....445556699********************************************************************** PP

                    ...................................................................................EEEEEEEEEESHE CS
                    ...................................................................................xxxxxxxxxxxxx RF
  Peptidase_M20 116 ...................................................................................kvevelleggapv 128
                                                                                                       +v+ve+ +g++++
     EHU02082.1 274 vggmpgdpeidrdwgeptltpterlygwntlevlsfltgnparpmnaipgeatavcqlrfvvgtdwenlaqhvrkhlsqhgfdNVNVEFMRGSPAT 369
                    **********************************************************************************88****99****** PP

                    EEC.CHHHHHHHHHHHHHHHTSCEEEE.EES..SSBHTHHHHTTTEEEEE.EE.SSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxx.xxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 129 tln.dsplvkalaeaaeelfgekveli.vsg..pggtdarffagiptvmi.fg.pgsglaHspnEyvdledlekgikvlarll 205
                    +l+  +plv+++ +++ e+ g+++ l    g    ++ ++ ++g+pt+++    p   + H++nE++  +  ++g+++++rll
     EHU02082.1 370 RLDpTDPLVDWVLASMAETSGKTPALLpNLGgsLPNEVFSDILGLPTLWVpHSyPA-CGQHGVNEHMLKSIAREGLQIMTRLL 451
                    ******************989886666466657777777777999***66644455.789********************998 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.4e-14   8.3e-11       2     105 ..     203     354 ..     202     358 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.4e-14
                 EB-EEEEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC...............................................TCCT CS
   M20_dimer   2 ghkGlaggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia..........................................eerslpr 55 
                 g +G++ +++t  ++++a Hsg  +g   N+ ++la ++a+l + +g  +                                          +er  + 
  EHU02082.1 203 GSRGAVNFRLTitARDNAYHSGnWGGLLSNPGTQLANAIASLVNAQGVLQvaalkpssltqqvrdilrqihvggmpgdpeidrdwgeptltpTERLYGW 301
                 889******998899999***************************99999******************************9999999999988888888 PP

                 CCCCCEECCE-C...CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCC CS
   M20_dimer  56 ttlnvtgiegGs...aknvipdeaeakidiRllpgedpeevleeieeilekea 105
                  tl+v ++  G+     n+ip+ea+a   +R++ g d+e + + ++++l++++
  EHU02082.1 302 NTLEVLSFLTGNparPMNAIPGEATAVCQLRFVVGTDWENLAQHVRKHLSQHG 354
                 899999999999**999*********************************997 PP

>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.022   1.3e+02      95     134 ..       7      47 ..       1      98 [. 0.66
   2 ?    5.4   0.0    0.0029        17      31      52 ..     107     128 ..      87     146 .. 0.77
   3 ?    0.2   0.0      0.12   6.9e+02     152     171 ..     253     272 ..     248     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.022
         WYL  95 pvevkvrfspeaarrvrerrf.pdqkieeedddgsvrvelp 134
                  ++++++f++   +r+ +rr+ + ++ +++d dg+++  l+
  EHU02082.1   7 IQQATAWFDSGEFQRILARRVaQRTESQRQDRDGELHHYLH 47 
                 67899999999999999988834555556666666653333 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0029
         WYL  31 tvePyglvlkngrwYLvaydek 52 
                  + P++lv  ++rwY  +  + 
  EHU02082.1 107 GLTPWELVEEDDRWYARGSADN 128
                 578************9996544 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.12
         WYL 152 veVlePaeLreevkeeaerl 171
                 v  l+P +L ++v+++++++
  EHU02082.1 253 VAALKPSSLTQQVRDILRQI 272
                 6779************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3674.00
//
Query:       EHU02083.1  [L=120]
Description: hypothetical protein CKS_0591 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.16   11.8   0.0    1.1  1  KptA_kDCL  KptA in kinetoplastid DICER domain


Domain annotation for each model (and alignments):
>> KptA_kDCL  KptA in kinetoplastid DICER domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.2e-06      0.16      75     129 ..       6      90 ..       3     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-06
   KptA_kDCL  75 paevidal...............................rrykestktpatkksdevlsrktfltfaevelralarsgkavvteaa 129
                 p++vid l                               r+ +  t  +a++++++v s+++ l +aev+ + +a++ +a+ t  +
  EHU02083.1   6 PEDVIDTLsktfwqrvsamkglierhqsfrllwfgealkRNHNW-TDISAEQAVNRVISESQGLPLAEVRKMTIAQKWVALSTVRK 90 
                 78888888888888888888888888888888888888544444.89999**************************9998766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 867.58
//
Query:       EHU02084.1  [L=402]
Description: hypothetical protein CKS_0592 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-108  361.6   0.0   2.6e-108  361.4   0.0    1.0  1  DUF4432   Domain of unknown function (DUF4432)
  ------ inclusion threshold ------
      0.042   14.0   0.1        0.2   11.8   0.1    2.1  2  DUF4232   Protein of unknown function (DUF4232)
       0.14   12.5   0.0       0.32   11.3   0.0    1.5  1  DUF5045   Domain of unknown function (DUF5045)


Domain annotation for each model (and alignments):
>> DUF4432  Domain of unknown function (DUF4432)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.4   0.0  4.4e-112  2.6e-108       1     302 [.      63     368 ..      63     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 361.4 bits;  conditional E-value: 4.4e-112
                 GTT-EEEEEEETTS-EEEEETTTTTEEEEEEETTEEE----S--.---GGG--..HHHHTGGGGT--.-SEEEEEES--SS-EEETTEEE-TTBSGGGS CS
     DUF4432   1 grGvrvlevrnggglrfevlpdRgmdilraefrgvrlgwdspvg.vvapalve..sreglgwlrgFnggllttCGlenvgapeedegeelgLHGrisni 96 
                 ++G+++l +r+++gl+++++p+Rgm++lr+e  g+rlgwdspv+ vv+pa+++  sr+glgwl+gFn +++++CG+e++g+p +d+g+ ++LHG+++n+
  EHU02084.1  63 QEGSKLLVIRSQDGLTITLIPTRGMNLLRVEGFGTRLGWDSPVKeVVNPAFINleSRNGLGWLEGFN-EMMVRCGYEWTGHPVNDKGRIYTLHGKAGNT 160
                 68*****************************************************************.******************************* PP

                 --SEEEEEEESSTT--EEEEEEEEEEETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SSS-EEEEEEEEEEE-TTT-STT-EEE--EEEEEESSGGGGG CS
     DUF4432  97 pAeevsveaeeegkleievtGevkeaalfgenlelereislelgeaeleveDevtNegsepaplmllYHvNfGtPlldegaellapvkevsprdeeaak 195
                 + ++++ve+ +++++ei+++G +ke+++++ +l++++e+s+ +g+++++++D +tN++++p+++ ++YH+Nf+tP+l+ega+++ap++ +sp++++a++
  EHU02084.1 161 SVSQLEVEVADAAPHEIRIRGLIKESTFKKADLQTWTELSYVPGSNQFSLHDMLTNHSDYPHDYEIIYHSNFSTPILEEGARFMAPMSGISPFNDYAKA 259
                 *********99**************************************************************************************** PP

                 GSTTTTB---S-TT---EEEEEEE---TTSEEEEEEE-SSSS-EEEEEEETTTS-EEEEEEEES-..T-EEEEEEEESS-SS-HHHHHHTT--EEE-TT CS
     DUF4432 196 glkdwntleaPtegfaEqVyelelaadekgetlaalvnkklglgvavkfdkdqLPvltlWkntga..geYvlGlEPstnfllgrsaereqgelitlepg 292
                 glk+w+t++ Pt++f+E+V+++++ +d++++t aa+vnk++++g++++fd++qLP+ltlWknt++  ++Yv+G+EP+tn++++ ++ereq ++++l+pg
  EHU02084.1 260 GLKNWQTYQGPTKDFDEMVFNIKPLSDKDHQTVAAVVNKAGNKGASIQFDTQQLPLLTLWKNTDTlkQGYVTGIEPGTNYAYPVTIEREQKRVKQLAPG 358
                 *****************************************************************99******************************** PP

                 -EEEEEEEEE CS
     DUF4432 293 esksfrlele 302
                 +s +f+l+++
  EHU02084.1 359 ASATFDLTYT 368
                 *******987 PP

>> DUF4232  Protein of unknown function (DUF4232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.25   1.5e+03      73     113 ..     257     301 ..     254     314 .. 0.62
   2 ?   11.8   0.1   3.3e-05       0.2      56      98 ..     344     386 ..     284     394 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.25
     DUF4232  73 Ayaglrwtnaggdgdgectaaglrvtppdgtksvtvp....dlga 113
                 A+agl+  +++++++++  +  + + p ++++++tv+    + g+
  EHU02084.1 257 AKAGLKNWQTYQGPTKDFDEMVFNIKPLSDKDHQTVAavvnKAGN 301
                 667776666777777777665555656688888888854443333 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.3e-05
     DUF4232  56 eregpaavpvt.LapGesAyaglrwtnaggdgdgectaaglrvt 98 
                 + e+ ++  v+ LapG+sA+++l++t   ++++  ++++ ++ +
  EHU02084.1 344 TIEREQKR-VKqLAPGASATFDLTYTLLHNSDQVNAVEKRIQAI 386
                 44444444.544**************999999888877666555 PP

>> DUF5045  Domain of unknown function (DUF5045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.3e-05      0.32      15      52 ..     349     387 ..     340     397 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
     DUF5045  15 qikvmEnGpg.dlapdfYYyllHkkYeksaavKrklpfR 52 
                 q +v    pg + + d+ Y+llH++ + +a +Kr++++ 
  EHU02084.1 349 QKRVKQLAPGaSATFDLTYTLLHNSDQVNAVEKRIQAIQ 387
                 4444444444256889*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3147.41
//
Query:       EHU02085.1  [L=45]
Description: hypothetical protein CKS_0593 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 359.11
//
Query:       EHU02086.1  [L=257]
Description: hypothetical protein CKS_0594 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-34  118.9   0.0    2.1e-34  118.0   0.0    1.5  1  2H-phosphodiest  Domain of unknown function (DUF1868)
    0.00076   19.4   0.1     0.0014   18.5   0.1    1.6  2  2_5_RNA_ligase2  2'-5' RNA ligase superfamily
  ------ inclusion threshold ------
      0.049   13.8   0.0       0.25   11.6   0.1    2.0  2  LigT_PEase       LigT like Phosphoesterase
       0.13   13.0   0.0        5.4    7.9   0.0    2.2  2  FtsQ             Cell division protein FtsQ
       0.88    9.5   3.4        1.8    8.6   3.4    1.5  1  TAT_signal       TAT (twin-arginine translocation) pathway si


Domain annotation for each model (and alignments):
>> 2H-phosphodiest  Domain of unknown function (DUF1868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   5.9e-38   2.1e-34       1     113 [.      36     153 ..      36     156 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 5.9e-38
                      SB-TTS-B----EEEEEEEB-T...TSHHHHHHHHHHHHHHTSGGGGGEEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHHHHH CS
  2H-phosphodiest   1 kFdaegkvlpepGnTvvshleq...gseaekavlaireklqaspeadklallPpsSlHmTvfegvieerrktdlWpadLpldaplqkitallae 91 
                      kFda+g+vlp+ GnT+++hl+q   gse ++a+l+++++l+ ++ + k++ lPpsS+HmTvf+g++++ r+ +lWpa Lpld+p+++++++lae
       EHU02086.1  36 KFDADGRVLPFKGNTIICHLPQqgdGSEPFDALLDVYRELPGESWSMKVTALPPSSYHMTVFGGANDKARRYPLWPAGLPLDMPMDECDRILAE 129
                      8********************999999******************************************************************* PP

                      HGGG--...------EEEEEEETT CS
  2H-phosphodiest  92 rLeqfel..leeafklkvtelapq 113
                      rL++++l   + + +++v+  ap+
       EHU02086.1 130 RLRTYKLgeDASPYHMRVNPEAPS 153
                      *******866789*****988776 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       0.7   2.5e+03     105     113 ..      88      96 ..      42     148 .. 0.64
   2 !   18.5   0.1     4e-07    0.0014      76     120 ..     166     208 ..      93     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.7
  2_5_RNA_ligase2 105 geftPHlTi 113
                       +   H+T+
       EHU02086.1  88 PPSSYHMTV 96 
                      333444444 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 4e-07
  2_5_RNA_ligase2  76 lsvsdsealqalraallealpeagdkedsgeftPHlTiaqsadst 120
                      ++++++++l++lr++l e  +  + ++  +++++H+T++++ ++ 
       EHU02086.1 166 ADAETETRLRRLRDRLSEVTGIREPDH--DRYQFHITLGYQVAPL 208
                      3449999************99998877..9**********98654 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.58   2.1e+03       9      39 ..      66      96 ..      62      97 .. 0.74
   2 ?   11.6   0.1   6.8e-05      0.25       4      42 ..     167     204 ..     164     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.58
                HHHHHHHHHHHHHHCCTTEEETSGGGSEEEE CS
  LigT_PEase  9 eelarlaaeleralaklglkpvrpfnpHiTL 39
                ++l  + +el  +  ++++   +p  +H+T+
  EHU02086.1 66 DALLDVYRELPGESWSMKVTALPPSSYHMTV 96
                667777777776666777777799999*996 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.8e-05
                 CHHHHHHHHHHHHHHHHHHCCTTEEET..SGGGSEEEEEEE CS
  LigT_PEase   4 peeiaeelarlaaeleralaklglkpv..rpfnpHiTLafl 42 
                 ++e+  +l+rl+++l       g++     ++++HiTL+  
  EHU02086.1 167 DAETETRLRRLRDRLS---EVTGIREPdhDRYQFHITLGYQ 204
                 5677889*********...4557776569*********865 PP

>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0015       5.4      10      97 ..      35     133 ..      28     136 .. 0.73
   2 ?    3.1   0.0     0.047   1.7e+02      45     105 ..     172     226 ..     144     236 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
                 EEEETT--B-C.....CCBS....S-EEE......S.-.HHHHHCCS-HHHHH.S-SEE............-SS-TTEEEE-T.TS-EEEEES....TT CS
        FtsQ  10 alidaeGevfeadeeaedek....lPlltGpegsek.e.vlevlaelpeelkpleisei............alserrrwqlvlddgvevklgreelaed 90 
                 +  da+G+v+      + ++    lP+    +gse+ + +l+v++elp e  +++++++            a ++ rr  l+   g+ + ++ +e ++ 
  EHU02086.1  35 RKFDADGRVLPF----KGNTiichLPQQG--DGSEPfDaLLDVYRELPGESWSMKVTALppssyhmtvfggANDKARRYPLWP-AGLPLDMPMDECDRI 126
                 567999999954....2231355688855..78888658***********999999999777777777777667777777766.677777777777777 PP

                 HHHHHHT CS
        FtsQ  91 leeklar 97 
                 l+e+l+ 
  EHU02086.1 127 LAERLRT 133
                 7777765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.047
                 HHHCCS-HHHHH.S-SEE..-SS-TTEEEE-T.TS-EEEEES....TTHHHHHHT-CCHHHC. CS
        FtsQ  45 evlaelpeelkpleisei..alserrrwqlvlddgvevklgreelaedleeklarlvkilpql 105
                  +l++l   l+  e++ i     +r++++++l  g +v    +++++    +++r  + ++++
  EHU02086.1 172 TRLRRLRDRLS--EVTGIrePDHDRYQFHITL--GYQVAPLTDDEDA----AWRRSLANWKTM 226
                 34444444443..3333344234577777777..9999888877777....666666666655 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.4    0.0005       1.8       2      20 ..       2      22 ..       1      26 [. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0005
  TAT_signal  2 lSRRdFLKgs.AAaaAAaa.l 20
                 +RR +LKg+ A ++ +aa l
  EHU02086.1  2 TTRRRLLKGTiATLGGLAAsL 22
                59********66666554434 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2157.93
//
Query:       EHU02087.1  [L=428]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-33  114.0  10.2    6.2e-33  114.0  10.2    2.8  3  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si
      2e-29  101.9   0.0    2.3e-13   50.3   0.0    2.9  3  PAS_9            PAS domain
    9.7e-24   83.5   0.2    8.7e-13   48.4   0.1    2.5  2  PAS_3            PAS fold
    7.3e-23   80.9   0.0    1.7e-11   44.3   0.0    2.8  3  PAS_4            PAS fold
    1.8e-12   47.2   0.0    1.2e-05   25.3   0.0    2.9  3  PAS              PAS fold
    2.3e-06   27.5   0.0      0.023   14.7   0.0    2.5  2  PAS_8            PAS domain
     0.0044   16.3   0.0       0.43    9.8   0.0    2.8  3  Cache_3-Cache_2  Cache 3/Cache 2 fusion domain
  ------ inclusion threshold ------
      0.018   15.3  10.5       0.98    9.7   0.5    3.9  3  DUF948           Bacterial protein of unknown function (DUF94
      0.038   14.0   0.0      0.097   12.7   0.0    1.6  1  Halogen_Hydrol   5-bromo-4-chloroindolyl phosphate hydrolysis
      0.067   13.2  11.6       0.48   10.4   1.8    3.7  3  Laminin_II       Laminin Domain II
       0.18   12.1   2.7       0.42   11.0   1.0    2.4  2  Csm1_N           Csm1 N-terminal domain
       0.23   11.5   1.9        0.4   10.7   0.2    2.3  2  LOH1CR12         Tumour suppressor protein
        1.5    9.3   5.5        6.2    7.3   5.7    2.0  2  FtsA             Cell division protein FtsA
        2.4    8.2  11.9       0.51   10.4   6.1    2.6  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
        3.4    7.7   9.9       0.46   10.5   1.1    3.2  3  DUF1664          Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.2   2.6e+03      34      48 ..     120     134 ..     113     156 .. 0.53
   2 ?    3.1   0.4      0.06        72     110     158 ..     228     275 ..     216     286 .. 0.70
   3 !  114.0  10.2   5.2e-36   6.2e-33      10     146 ..     289     425 ..     280     428 .] 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHH CS
   MCPsignal  34 eisdiieVideiadQ 48 
                  +++ii++ ++i+++
  EHU02087.1 120 AVKKIIKIANDITHK 134
                 344444444444433 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.06
                 HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 110 eetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasi 158
                 e + + v+ +s  v +  +  ++i+++v++  + + +ia++++e ++ i
  EHU02087.1 228 EASYNPVKDASGHVYKVIKLASDITDRVENA-KRIADIAVTTSEETSQI 275
                 5566667777777777777777888887764.56777887777666554 PP

  == domain 3  score: 114.0 bits;  conditional E-value: 5.2e-36
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH............. CS
   MCPsignal  10 eAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqkeindsves 108
                 +Ae+   +v  + +  + +++ss +i++i++ i+ ia QTN+LALNAaiEAARAGe+GrGFaVVA+EVr+LA+ + qa+ +i+++++e ++ i++  + 
  EHU02087.1 289 NAESMSLQVGAAADIGDRLNHSSMDIKEIVSTINTIAGQTNILALNAAIEAARAGEAGRGFAVVAEEVRRLAASTSQATLKITKVVEENTALIENMSRQ 387
                 5666666677777777889999***************************************************************************** PP

                 .HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH CS
   MCPsignal 109 leetrqrveegselveetgealkeiveavaevadlvqe 146
                 l+e r+   +  +++++  ++++ei   v+e  ++++ 
  EHU02087.1 388 LDEIRRFLTTENDKISNLSRSFQEINRGVNEFVTVIHR 425
                 *****************************998887765 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   8.5e-16     1e-12       7     103 ..      36     132 ..      31     133 .. 0.96
   2 !   50.3   0.0   1.9e-16   2.3e-13       4     104 .]     154     253 ..     150     253 .. 0.92
   3 ?   -3.1   0.0       7.7   9.2e+03      21      38 ..     273     289 ..     267     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 8.5e-16
       PAS_9   7 dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerevevvlirkngetfwvlltaspvkdddgelvgiivilrDit 103
                 + pdgri+ aN+ +l+l+Gy+ +e+ g++ + +++++  + ++  ++++++ + + +++  +  rkn ++++  +t +pvkd +g ++ ii i +Dit
  EHU02087.1  36 T-PDGRIITANTPFLELTGYTLNEIAGQHHRLFCDDEFVHSSDYTHFWQTLGSgHSFSGIFERFRKNHSRLYLSATYFPVKDRHGAVKKIIKIANDIT 132
                 4.9***********************************************99999******************************************9 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 1.9e-16
       PAS_9   4 ilidnpdgrilyaNeaalrllGyspeevlgksitdlf.vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilrD 101
                 ++  +p+g++++aN+ +l+l+Gy+ e++ gk+ + ++ ++  +++ ++++ ++qgr  ++++  + ++ +g+++w +++  pvkd++g +  +i +  D
  EHU02087.1 154 MIEFTPQGEVIDANNNFLKLMGYQLEAIQGKHHRIFCfDEFYKEQPDFWQKIQQGR--AFTGRFERVTASGKRVWLEASYNPVKDASGHVYKVIKLASD 250
                 44345***************************999998777788999*********..***************************************** PP

       PAS_9 102 ite 104
                 it+
  EHU02087.1 251 ITD 253
                 *96 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.7
       PAS_9  21 lrllGyspeevlgksitd 38 
                  +++ +++++vlg  i++
  EHU02087.1 273 SQIT-FNANDVLGETIRN 289
                 5666.7899999988876 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   5.1e-11   6.1e-08       1      89 []      41     128 ..      41     128 .. 0.91
   2 !   48.4   0.1   7.3e-16   8.7e-13       2      87 ..     164     246 ..     163     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 5.1e-11
       PAS_3   1 iiyvserveeilGyspeellgkveswldlvhpeD.rervrealqealkkgepyegeyRirrkdGeyrwveararvirdengkpvrvigva 89 
                 ii+++  + e++Gy+ +e+ g+  +++ ++  e   +  ++++++ l +g++++g + ++rk+ +  +++a++++++d++g + ++i++a
  EHU02087.1  41 IITANTPFLELTGYTLNEIAGQ--HHRLFCDDEFvHSSDYTHFWQTLGSGHSFSGIFERFRKNHSRLYLSATYFPVKDRHGAVKKIIKIA 128
                 589999****************..6666666555778889**********************************************9985 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 7.3e-16
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGeyrwveararvirdengkpvrvig 87 
                 i +++++ +++Gy+ e ++gk   +  +   ++  + + ++++ +++g++++g + +++++G+ +w+ea++++++d +g++++vi+
  EHU02087.1 164 IDANNNFLKLMGYQLEAIQGK---HHRIFCFDEFYKEQPDFWQKIQQGRAFTGRFERVTASGKRVWLEASYNPVKDASGHVYKVIK 246
                 889******************...5666666777999999*******************************************997 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.7e-11   4.4e-08       6     109 ..      30     135 ..      27     136 .. 0.94
   2 !   44.3   0.0   1.4e-14   1.7e-11       7     109 ..     153     255 ..     148     256 .. 0.94
   3 ?   -1.5   0.0       2.4   2.9e+03      15      39 ..     328     350 ..     323     386 .. 0.62

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.7e-11
       PAS_4   6 dalavldpdgrvlyaNaaaaelfgappeellGktlaellpee..daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvis 102
                  +++ + pdgr++ aN+ + el g++  e+ G++ + +  +e  +  ++ + ++ + +g+ +    e  + + ++ +++ +++P++d++G v  ++ i+
  EHU02087.1  30 IGWIEFTPDGRIITANTPFLELTGYTLNEIAGQHHRLFCDDEfvHSSDYTHFWQTLGSGHSFSGIFERFRKNHSRLYLSATYFPVKDRHGAVKKIIKIA 128
                 579999******************************77777799****************99999999999**************************** PP

       PAS_4 103 rDiTerr 109
                  DiT  +
  EHU02087.1 129 NDITHKH 135
                 ****876 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 1.4e-14
       PAS_4   7 alavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisrDi 105
                 a + + p+g v++aN+++ +l+g++ e++ Gk+ + +  +e   +  + +++  +g+++  + e ++ +g+++++e +++P++d+sG v  v+ ++ Di
  EHU02087.1 153 AMIEFTPQGEVIDANNNFLKLMGYQLEAIQGKHHRIFCFDEFYKEQPDFWQKIQQGRAFTGRFERVTASGKRVWLEASYNPVKDASGHVYKVIKLASDI 251
                 456679*****************************8888889999****************************************************** PP

       PAS_4 106 Terr 109
                 T+r+
  EHU02087.1 252 TDRV 255
                 **97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.4
       PAS_4  15 grvlyaNaaaaelfgappeellGkt 39 
                  ++l++Naa+++  ++++e+ +G  
  EHU02087.1 328 TNILALNAAIEA--ARAGEAGRGFA 350
                 578889999888..44555544443 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     1e-06    0.0012      19     113 .]      37     131 ..      28     131 .. 0.89
   2 !   25.3   0.0   9.8e-09   1.2e-05       2     103 ..     140     241 ..     139     251 .. 0.87
   3 ?   -3.1   0.0       6.2   7.5e+03      15      33 ..     394     412 ..     394     412 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1e-06
                 TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH....HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEEES CS
         PAS  19 edgrilyvNaaaeellGlsreevlgkslldliheedda....elaelleqlleqgeesrageisfklrdgrpihlevraspvrdaggeilgflgvlrdi 113
                  dgri+ +N+ + el+G++ +e+ g++   l+  +  +     ++ +++q l +g+++++   +f++ +++  +l  +  pv d+ g ++ ++ +++di
  EHU02087.1  37 PDGRIITANTPFLELTGYTLNEIAGQHHR-LFCDD--EfvhsSDYTHFWQTLGSGHSFSGIFERFRK-NHSRLYLSATYFPVKDRHGAVKKIIKIANDI 131
                 69************************988.33223..233678************************.*******************999999888887 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 9.8e-09
                 HHHHHHHHSSSEEEEEE..TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvD..edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrd 98 
                 + +ai+ +l + + ++    +g+++ +N ++ +l G++ e + gk+  ++ +  + ++ +  ++q ++qg+ +++   +++   g+ ++le   +pv d
  EHU02087.1 140 HKEAIITALNNSMAMIEftPQGEVIDANNNFLKLMGYQLEAIQGKHHRIFCFD-EFYKEQPDFWQKIQQGRAFTGRFERVTA-SGKRVWLEASYNPVKD 236
                 56788888777777777779*******************************95.5889**************9998888888.**************** PP

                 TTEEE CS
         PAS  99 aggei 103
                 a+g +
  EHU02087.1 237 ASGHV 241
                 *9965 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.2
                 EEEETTSBEEEECHHHHHH CS
         PAS  15 fvvDedgrilyvNaaaeel 33 
                 f++ e+ +i+  +++++e+
  EHU02087.1 394 FLTTENDKISNLSRSFQEI 412
                 67889999******99986 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.9e-05     0.023      20      49 ..      38      67 ..      17      86 .. 0.80
   2 !   10.2   0.0   0.00051      0.61       4      54 ..     142     194 ..     140     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
       PAS_8 20 gdrivdvNqaalellGys.adlkgellgqll 49
                ++ri+ +N  +lel+Gy+ +++ g+   +l+
  EHU02087.1 38 DGRIITANTPFLELTGYTlNEIAGQHH-RLF 67
                468***************999888655.444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00051
       PAS_8   4 ralfesspdgiavvd...lgdrivdvNqaalellGys.adlkgellg...qllpvlrp 54 
                 +a++ ++++++a++     g  ++d+N+ +l+l Gy  +  +    g   ++++  + 
  EHU02087.1 142 EAIITALNNSMAMIEftpQG-EVIDANNNFLKLMGYQlE-AIQ---GkhhRIFCFDEF 194
                 57899999999998885444.5*************8722.222...223255554444 PP

>> Cache_3-Cache_2  Cache 3/Cache 2 fusion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.047        56     155     186 ..     109     140 ..      81     144 .. 0.83
   2 !    9.8   0.0   0.00036      0.43     134     185 ..     203     259 ..     192     268 .. 0.80
   3 ?   -1.2   0.0      0.79   9.4e+02     183     241 ..     332     387 ..     318     409 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.047
  Cache_3-Cache_2 155 TaYePikdadgkViGilyVgvdqsealkslrk 186
                      + Y P+kd+ g V  i+ ++ d++   ++l+ 
       EHU02087.1 109 ATYFPVKDRHGAVKKIIKIANDITHKHEALKH 140
                      68*********************999998875 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00036
  Cache_3-Cache_2 134 kavlagetYvGrakvf...gk..wYvTaYePikdadgkViGilyVgvdqsealkslr 185
                      +++++g+ ++Gr   +   gk  w  + Y P+kda+g V+ ++  + d+++ +++ +
       EHU02087.1 203 QKIQQGRAFTGRFERVtasGKrvWLEASYNPVKDASGHVYKVIKLASDITDRVENAK 259
                      78999999999865551214455888*******************999999888765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.79
  Cache_3-Cache_2 183 slrkelkklkvGktGylyvldgkgdkkgkliihptlk.gknvldlkdadgesvvkkllkk 241
                      +l  ++++++ G+ G  +++ +++    + ++  t++   +++++ ++ +++ ++++  +
       EHU02087.1 332 ALNAAIEAARAGEAGRGFAVVAEE---VRRLAASTSQaTLKITKVVEE-NTALIENMSRQ 387
                      566677777777776666555552...333333333335555555333.33355555444 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.2   1.5e+03      51      71 ..     119     139 ..     114     156 .. 0.73
   2 ?    9.7   0.5   0.00082      0.98      29      85 ..     252     308 ..     238     311 .. 0.79
   3 ?    9.7   0.4   0.00085         1      18      66 ..     364     415 ..     348     427 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
      DUF948  51 dllakvnelledvneklekvd 71 
                 ++++k+ ++++d+++k e+++
  EHU02087.1 119 GAVKKIIKIANDITHKHEALK 139
                 567777788888888877765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00082
      DUF948  29 deaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvs 85 
                 +   +  + + + +  +++e+ +++ ++n++l +  +  e++   + a+ad+g+ ++
  EHU02087.1 252 TDRVENAKRIADIAVTTSEETSQITFNANDVLGETIRNAESMSLQVGAAADIGDRLN 308
                 33334456677888999************************************9876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00085
      DUF948  18 ivvllklkktldeaaatieelekqvdpilkeved...llakvnelledvnek 66 
                   + lk++k+++e++a ie++ +q+d+i + +++    +++  +  +++n+ 
  EHU02087.1 364 SQATLKITKVVEENTALIENMSRQLDEIRRFLTTendKISNLSRSFQEINRG 415
                 5667899999999999999999998887655544000333444444444443 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.1e-05     0.097      97     143 ..     368     414 ..     347     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.1e-05
  Halogen_Hydrol  97 reilriarrifkalekePrrlkkarrFlysyLdsaveltekYaeLsk 143
                      +i++++++  + +e+  r+l + rrFl+++ d++ +l++ + e+++
      EHU02087.1 368 LKITKVVEENTALIENMSRQLDEIRRFLTTENDKISNLSRSFQEINR 414
                     577888888888999999***************************87 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.091   1.1e+02      55      88 ..     115     148 ..      96     156 .. 0.83
   2 ?    4.1   0.9     0.036        43       5      64 ..     234     293 ..     230     341 .. 0.68
   3 ?   10.4   1.8   0.00041      0.48       5      78 ..     353     426 ..     350     428 .] 0.70

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.091
                 XXXXXXXXXX--TTTTTGGGHHHHHHHHHH...H CS
  Laminin_II  55 rdArrsvkkLeklapqLldklkelkqleeasssl 88 
                 +d   +vkk+ k a+++  k + lk++e    +l
  EHU02087.1 115 KDRHGAVKKIIKIANDITHKHEALKHKEAIITAL 148
                 6677899*****************9998765555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.036
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkL 64 
                 +++a+  + +v +   ++  ++en k  +  + ++ eet +   +an ++ +  r+   +
  EHU02087.1 234 VKDASGHVYKVIKLASDITDRVENAKRIADIAVTTSEETSQITFNANDVLGETIRNAESM 293
                 677888888888888888888888887777666666777776666666554444444444 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00041
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHH CS
  Laminin_II   5 aaeanetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkel 78 
                 a+e+   a+++ + + ++ + +e+  + ++++ r+++e+   +   n  i   +rs +++++ +++ +  +++l
  EHU02087.1 353 AEEVRRLAASTSQATLKITKVVEENTALIENMSRQLDEIRRFLTTENDKISNLSRSFQEINRGVNEFVTVIHRL 426
                 66667777777777777777777777777777777777777777777777777777777777777766655555 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.7   3.2e+03      30      54 ..     132     156 ..     121     161 .. 0.76
   2 ?   11.0   1.0   0.00035      0.42      17      45 ..     365     393 ..     362     419 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
      Csm1_N  30 svLsqkletkdqeiesLkeqlaele 54 
                 + ++++l+ k+  i +L + +a +e
  EHU02087.1 132 THKHEALKHKEAIITALNNSMAMIE 156
                 6677889999999999999888765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00035
      Csm1_N  17 sAdllvsklvhENsvLsqkletkdqeies 45 
                 +A l ++k+v+EN+ L ++++ + +ei +
  EHU02087.1 365 QATLKITKVVEENTALIENMSRQLDEIRR 393
                 68999***************999999976 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.4   2.9e+03      85     116 ..     120     151 ..     115     156 .. 0.78
   2 ?   10.7   0.2   0.00034       0.4      47     114 ..     359     427 ..     345     428 .] 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.4
    LOH1CR12  85 alskvnelsdqlsriqiiledivpllEtlnel 116
                 a++k+ ++ ++++  +  l+++ +++ +ln+ 
  EHU02087.1 120 AVKKIIKIANDITHKHEALKHKEAIITALNNS 151
                 56788888888888888888888888888875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00034
    LOH1CR12  47 vAadqaklverikevdakiitllaelrekqkqyasyaea.lskvnelsdqlsriqiiledivpllEtln 114
                  Aa   + + +i +v ++ + l++++  + ++   +  +   k+ +ls   + i+  +++ v ++ +ln
  EHU02087.1 359 LAASTSQATLKITKVVEENTALIENMSRQLDEIRRFLTTeNDKISNLSRSFQEINRGVNEFVTVIHRLN 427
                 3566666666666666677899***99999999999765268*************************99 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.6   6.7e+03      74      87 ..     120     133 ..      54     154 .. 0.73
   2 ?    7.3   5.7    0.0052       6.2      26      71 ..     267     363 ..     235     420 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.6
                 GSTTHHHHHHHHHT CS
                 xxxxxxxxxxxxxx RF
        FtsA  74 alpnleelaerals 87 
                 a+++++++a++++ 
  EHU02087.1 120 AVKKIIKIANDITH 133
                 56677777777752 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0052
                 ES-.-HHHHHHHHHHHHT--HHHHHHHHHHH--S--............EEEEEHHHHH......................................... CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxx......................................... RF
        FtsA  26 igv.ggngitkdiakalrtaveeAerikikyGsala............ekeigrkels......................................... 70 
                     + ++it  +  +l++ + +Ae+++ + G+a              +      e+                                          
  EHU02087.1 267 TTSeETSQITFNANDVLGETIRNAESMSLQVGAAADigdrlnhssmdiK------EIVstintiagqtnilalnaaieaarageagrgfavvaeevrrl 359
                 333677899999*********************9999887775544431......33255667775555666666666666555555555555555555 PP

                 ...G CS
                 ...x RF
        FtsA  71 ...g 71 
                     
  EHU02087.1 360 aasT 363
                 5541 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.98   1.2e+03      91     105 ..     142     156 ..     120     180 .. 0.57
   2 ?   10.4   6.1   0.00042      0.51      21     118 ..     320     426 ..     299     428 .] 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.98
  Baculo_PEP_C  91 nsiltnLlssvtNin 105
                   ++i+t L++s++ i+
    EHU02087.1 142 EAIITALNNSMAMIE 156
                   344444444444333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00042
  Baculo_PEP_C  21 vLnairlqnvqil...aqlatlldaie.tqLnalsedlksllaeldt...rldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinst 107
                   ++n+i + +++il   a+++++ +  + + +  ++e++++l a+ ++   ++++++++ t+ + +++   d++r  Lt+ n +++nL  s   in  
    EHU02087.1 320 TINTI-AGQTNILalnAAIEAARAGEAgRGFAVVAEEVRRLAASTSQatlKITKVVEENTALIENMSrqlDEIRRFLTTENDKISNLSRSFQEINRG 415
                   33444.2233332111455555443331457888999999999988888888888888888888888888*************************** PP

  Baculo_PEP_C 108 Lnnllqalnnl 118
                   +n  ++ +  l
    EHU02087.1 416 VNEFVTVIHRL 426
                   ****9988765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.44   5.3e+02      87     121 ..     122     156 ..     116     159 .. 0.85
   2 ?    0.3   0.3      0.58   6.9e+02      73      95 ..     281     303 ..     227     334 .. 0.54
   3 ?   10.5   1.1   0.00039      0.46      44     114 ..     357     427 ..     350     428 .] 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.44
     DUF1664  87 eevtevredlseigedvesvkeaveglesklerie 121
                 +++ ++ +d+++ +e +++ +++++ l+++++ ie
  EHU02087.1 122 KKIIKIANDITHKHEALKHKEAIITALNNSMAMIE 156
                 57888999999999999999999999999999887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.58
     DUF1664  73 kkldeqkeiskeikeevtevred 95 
                 + l e+++ +++++ +v ++ + 
  EHU02087.1 281 DVLGETIRNAESMSLQVGAAADI 303
                 33444444444444444433333 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00039
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                  +++ +  q   +++++ ++ ++ i+++ ++lde  +  +  +++++++++  +ei++ v++  ++++ l+
  EHU02087.1 357 RRLAASTSQATLKITKVVEENTALIENMSRQLDEIRRFLTTENDKISNLSRSFQEINRGVNEFVTVIHRLN 427
                 55556666677777888888899999999999999999999999999999999999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1319  (0.073568); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 2868.59
//
Query:       EHU02088.1  [L=428]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-31  107.5  15.8    6.3e-31  107.5  15.8    2.7  3  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
    5.3e-25   87.7   0.1    1.1e-11   44.9   0.0    2.8  3  PAS_9          PAS domain
    1.9e-24   85.8   0.0      6e-13   48.9   0.0    2.5  2  PAS_3          PAS fold
    7.4e-20   71.2   0.0    3.8e-08   33.5   0.0    3.0  3  PAS_4          PAS fold
      1e-08   35.1   0.0    0.00066   19.7   0.0    3.2  3  PAS            PAS fold
  ------ inclusion threshold ------
      0.026   14.5   0.0       0.83    9.8   0.0    2.4  2  PAS_8          PAS domain
      0.032   14.2  10.3        2.7    8.0   0.4    3.3  3  Laminin_II     Laminin Domain II
      0.055   13.4   5.2       0.15   12.0   0.1    2.9  3  Vip3A_N        Vegetative insecticide protein 3A N terminal
      0.071   12.8   4.1       0.32   10.7   3.3    2.0  2  Polyoma_coat2  Polyomavirus coat protein
      0.085   13.2   6.6        3.9    7.9   0.1    3.0  3  BLOC1_2        Biogenesis of lysosome-related organelles comp
       0.11   12.2   0.6         15    5.3   0.0    3.3  3  FimH_man-bind  FimH, mannose binding
       0.38   10.6   3.6         11    5.8   0.3    2.7  2  DUF5100        Domain of unknown function (DUF5100)
        0.5   10.6  15.8       0.99    9.7   0.6    3.9  3  DUF948         Bacterial protein of unknown function (DUF948)
          1    9.4   6.6       0.61   10.1   0.1    2.8  3  LOH1CR12       Tumour suppressor protein
        1.2    9.6  11.1        4.2    7.9   0.4    3.5  3  NPV_P10        Nucleopolyhedrovirus P10 protein
        1.5    8.6   5.0       0.79    9.5   0.1    2.4  3  KASH_CCD       Coiled-coil region of CCDC155 or KASH
        3.3    7.8  12.9        1.7    8.7   1.0    3.4  3  DUF1664        Protein of unknown function (DUF1664)
        6.1    7.4  10.4        5.7    7.5   0.6    2.8  3  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.6   1.6e+03      34      48 ..     120     134 ..     113     156 .. 0.57
   2 ?    1.5   3.4      0.23   2.3e+02      72     142 ..     256     295 ..     226     302 .. 0.44
   3 !  107.5  15.8   6.4e-34   6.3e-31      15     145 ..     280     424 ..     262     428 .] 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHH CS
   MCPsignal  34 eisdiieVideiadQ 48 
                  +++ii++ ++i+d 
  EHU02088.1 120 TVKKIIKIANDITDR 134
                 444555555555443 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH CS
   MCPsignal  72 VVAdEVrkLAersaqaakeiealiieiqkeindsvesleetrqrveegselveetgealkeiveavaevad 142
                 V A++V ++A                                   e++s+++ +++++l++ v +v+++a+
  EHU02088.1 256 VTAQDVADIAMT-------------------------------TSEKTSHITVNANDVLSQTVRNVESMAS 295
                 223333333333...............................3333333333333333333333333333 PP

  == domain 3  score: 107.5 bits;  conditional E-value: 6.4e-34
                 HHHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
   MCPsignal  15 gkevanvvkqmeeieks..............skeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiq 99 
                 + +++++v+++e+++++              +k+i++i++ i +ia QTN+LALNAaiEAARAGe+GrGFaVVA+EVr+LA+ + qa+++i+++++e  
  EHU02088.1 280 NDVLSQTVRNVESMASQvaaaagisdklnysAKDIKEIVSTIHNIAGQTNILALNAAIEAARAGEAGRGFAVVAEEVRRLAASTSQATQKISKVVEENA 378
                 5556666666666666666666666667776****************************************************************9999 PP

                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvq 145
                   i d  + l+  ++   +  +++ +  ++++ei + v+e  ++++
  EHU02088.1 379 SLIGDMHQQLDGINSFLTTENDKITHLSDNIQEIFSGVNEFVTVIH 424
                 9999999999999999999999999999999999999988777766 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.1e-14   1.1e-11       7     104 .]      36     133 ..      30     133 .. 0.85
   2 !   39.8   0.0   4.3e-13   4.2e-10       4     104 .]     154     253 ..     151     253 .. 0.90
   3 ?   -3.0   0.1       8.7   8.6e+03       4      24 ..     394     413 ..     391     420 .. 0.69

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.1e-14
       PAS_9   7 dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerevevvlirkngetfwvlltaspvkdddgelvgiivilrDite 104
                 + p+g il aN+a+l ++Gy+  e+ g++ + ++++d  + ++ + ++e++ + + +++  + +rk+++ ++  ++ +pvkd++g+++ ii i +Dit+
  EHU02088.1  36 T-PEGIILTANPAFLAVTGYQLSEITGQHHRLFCKPDFVRSREYALFWETLASgQSFSGIFERYRKDNSLLYLSANYFPVKDKHGTVKKIIKIANDITD 133
                 4.999555*********************99999555555555555555555566*****************99************************6 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 4.3e-13
       PAS_9   4 ili.dnpdgrilyaNeaalrllGyspeevlgksitdlf.vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilr 100
                 ++  + p+ +++ aN+ +l+l+ y+ +++ gk+ + ++ +   ++n ++++ ++qgr  ++++  + ++ +g+++w +++  pvkd++g +  +i +  
  EHU02088.1 154 MIEfT-PQDEVINANKNFLTLMEYDLAAIQGKHHRLFCfDAFYKENPDFWHRIQQGR--AFTGRFERVTASGKRVWLEANYNPVKDASGHVYKVIKLAS 249
                 44325.8888***********************8888875556777889999*****..**************************************** PP

       PAS_9 101 Dite 104
                 Dite
  EHU02088.1 250 DITE 253
                 ***8 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8.7
       PAS_9   4 ilidnpdgrilyaNeaalrll 24 
                 +l ++++ +i++ ++   +++
  EHU02088.1 394 FL-TTENDKITHLSDNIQEIF 413
                 44.458888999999999887 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   6.1e-16     6e-13       2      89 .]      42     128 ..      41     128 .. 0.97
   2 !   34.5   0.0   1.9e-11   1.9e-08       2      87 ..     164     246 ..     163     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 6.1e-16
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeD.rervrealqealkkgepyegeyRirrkdGeyrwveararvirdengkpvrvigva 89 
                 +++++++  ++Gy+ +e++g+  +++ ++ p+  r+r ++ ++e l++g++++g + + rkd +  +++a +++++d++g + ++i++a
  EHU02088.1  42 LTANPAFLAVTGYQLSEITGQ--HHRLFCKPDFvRSREYALFWETLASGQSFSGIFERYRKDNSLLYLSANYFPVKDKHGTVKKIIKIA 128
                 789******************..**************************************************************9985 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 1.9e-11
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkgepyegeyRirrkdGeyrwveararvirdengkpvrvig 87 
                 i +++++  ++ y+ + ++gk   +  l   +   + + ++++ +++g++++g + +++++G+ +w+ea +++++d +g++++vi+
  EHU02088.1 164 INANKNFLTLMEYDLAAIQGK---HHRLFCFDAFYKENPDFWHRIQQGRAFTGRFERVTASGKRVWLEANYNPVKDASGHVYKVIK 246
                 789******************...7777778889999**********************************************997 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   4.1e-11     4e-08       7     110 .]      31     136 ..      27     136 .. 0.93
   2 !   33.5   0.0   3.8e-11   3.8e-08       9     109 ..     155     255 ..     149     256 .. 0.91
   3 ?   -0.1   0.1       1.1     1e+03      14      66 ..     327     380 ..     320     390 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.1e-11
       PAS_4   7 alavldpdgrvlyaNaaaaelfgappeellGktlaellpee..daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisr 103
                 +++ + p+g +l aN+a+ ++ g++  e++G++ + +  ++    ++++  ++ +++g+ +    e ++ + +  +++ +++P++d +G+v  ++ i+ 
  EHU02088.1  31 GWIEFTPEGIILTANPAFLAVTGYQLSEITGQHHRLFCKPDfvRSREYALFWETLASGQSFSGIFERYRKDNSLLYLSANYFPVKDKHGTVKKIIKIAN 129
                 688999*****************************77777788889999999999999999999999999***************************** PP

       PAS_4 104 DiTerrr 110
                 DiT+r++
  EHU02088.1 130 DITDRHE 136
                 *****96 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 3.8e-11
       PAS_4   9 avldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisrDiTe 107
                 + + p+  v+ aN+++  l+ ++ +++ Gk+ + +  +    +  + + r  +g+++  + e ++ +g+++++e +++P++d+sG v  v+ ++ DiTe
  EHU02088.1 155 IEFTPQDEVINANKNFLTLMEYDLAAIQGKHHRLFCFDAFYKENPDFWHRIQQGRAFTGRFERVTASGKRVWLEANYNPVKDASGHVYKVIKLASDITE 253
                 556788899************************66666688899999***********9***9999********************************* PP

       PAS_4 108 rr 109
                 r+
  EHU02088.1 254 RV 255
                 96 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.1
       PAS_4  14 dgrvlyaNaaaaelfgappeellGktla..ellpee.daarleralrrvlegeepi 66 
                 + ++l++Naa+++  ++++e+ +G  +   e+     +  +  + + +v+e+++++
  EHU02088.1 327 QTNILALNAAIEA--ARAGEAGRGFAVVaeEVRRLAaSTSQATQKISKVVEENASL 380
                 5678999999998..55555555554444254443367777777777777777665 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.6e-07   0.00066      19     113 .]      37     131 ..      27     131 .. 0.92
   2 !   11.4   0.0   0.00024      0.24       3     103 ..     141     241 ..     139     251 .. 0.83
   3 ?   -0.8   0.0       1.4   1.4e+03      15      34 ..     394     413 ..     384     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.6e-07
                 TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH..HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEEES CS
         PAS  19 edgrilyvNaaaeellGlsreevlgkslldliheedda..elaelleqlleqgeesrageisfklrdgrpihlevraspvrdaggeilgflgvlrdi 113
                   g+il +N+a+   +G++ +e+ g++   l+  +d      ++l+++ l++g+++++   + ++ d++  +l  +  pv d+ g+++ ++ +++di
  EHU02088.1  37 PEGIILTANPAFLAVTGYQLSEITGQHHR-LFCKPDFVrsREYALFWETLASGQSFSGIFERYRK-DNSLLYLSANYFPVKDKHGTVKKIIKIANDI 131
                 579************************99.66567777899************************.*********************9999999887 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00024
                 HHHHHHHSSSEEEEEE..TTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEET CS
         PAS   3 lraileslpdpifvvD..edgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrda 99 
                  +ai+ +l + + ++    + +++ +N+++ +l  ++   + gk+   + + +  ++ +  ++ +++qg+ +++   +++   g+ ++le + +pv da
  EHU02088.1 141 KEAIITALNNTMAMIEftPQDEVINANKNFLTLMEYDLAAIQGKHHRLFCF-DAFYKENPDFWHRIQQGRAFTGRFERVTA-SGKRVWLEANYNPVKDA 237
                 5677777666666666668999999*******************9996666.56779999**********99998888888.***************** PP

                 TEEE CS
         PAS 100 ggei 103
                 +g +
  EHU02088.1 238 SGHV 241
                 9965 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
                 EEEETTSBEEEECHHHHHHH CS
         PAS  15 fvvDedgrilyvNaaaeell 34 
                 f++ e+ +i++ +++++e++
  EHU02088.1 394 FLTTENDKITHLSDNIQEIF 413
                 7899**************98 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00083      0.83      22      45 ..      40      64 ..      18      88 .. 0.78
   2 ?    2.1   0.0      0.21   2.1e+02       5      38 ..     143     179 ..     140     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00083
       PAS_8 22 rivdvNqaalellGys.adlkgell 45
                 i+ +N+a+l  +Gy   ++ g+  
  EHU02088.1 40 IILTANPAFLAVTGYQlSEITGQHH 64
                4999**********99888777644 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.21
       PAS_8   5 alfesspdgiavvd...lgdrivdvNqaalellGys.a 38 
                 a++ ++++ +a++     +  ++ +N+ +l l  y+ a
  EHU02088.1 143 AIITALNNTMAMIEftpQD-EVINANKNFLTLMEYDlA 179
                 5667777777776654333.5***********999843 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.19   1.9e+02      55      84 ..     115     144 ..      89     156 .. 0.81
   2 ?    7.4   2.7    0.0042       4.2       6     102 ..     249     340 ..     232     345 .. 0.70
   3 ?    8.0   0.4    0.0027       2.7       8      64 ..     356     412 ..     349     427 .. 0.48

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
                 XXXXXXXXXX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  55 rdArrsvkkLeklapqLldklkelkqleea 84 
                 +d    vkk+ k a+++ d+ +el ++e  
  EHU02088.1 115 KDKHGTVKKIIKIANDITDRHEELTHKEAI 144
                 6677889999999*******9999888765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0042
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHH CS
  Laminin_II   6 aeanetakevleqlaplsqnlentkekl.seinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqA 102
                 +++ e ++ + +++a+++  +++  + +  ++n+ + +t  +v+++  +++ A   + kL+  a ++ + ++++ +   +      ni  + + I++A
  EHU02088.1 249 SDITERVV-TAQDVADIAMTTSEKTSHItVNANDVLSQTVRNVESMASQVAAAAGISDKLNYSAKDIKEIVSTIHNIAGQ-----TNILALNAAIEAA 340
                 33333333.34667777777665544441567777888999999999999999999999999999998888888776665.....4455555555555 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0027
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   8 anetakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkL 64 
                 +   a+++ + ++++s+ +e+  + +  ++++++ +n  +   n  i   +++++++
  EHU02088.1 356 VRRLAASTSQATQKISKVVEENASLIGDMHQQLDGINSFLTTENDKITHLSDNIQEI 412
                 444444444444444444444444444444444444444444444444444444443 PP

>> Vip3A_N  Vegetative insecticide protein 3A N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.93   9.2e+02      75     107 ..     121     152 ..     116     183 .. 0.66
   2 ?    2.2   0.1      0.15   1.5e+02     100     145 ..     280     324 ..     235     343 .. 0.70
   3 ?   12.0   0.1   0.00015      0.15      72     116 ..     364     408 ..     350     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.93
     Vip3A_N  75 skeilkianeqnqvlndvnnkldaintmlrvyl 107
                  k+i+kian+     +++  k +ai t l+  +
  EHU02088.1 121 VKKIIKIANDITDRHEELTHK-EAIITALNNTM 152
                 588999999888777777665.44444444433 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
     Vip3A_N 100 ntmlrvylpkitsmlsdvmkqnyalslqieylskqlqeisdkldii 145
                 n +l   + ++ sm s+v      +s +++y +k+++ei   +  i
  EHU02088.1 280 NDVLSQTVRNVESMASQVAAA-AGISDKLNYSAKDIKEIVSTIHNI 324
                 455666667777787777654.467778888888888876665544 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00015
     Vip3A_N  72 telskeilkianeqnqvlndvnnkldaintmlrvylpkitsmlsd 116
                 ++ +++i k+ +e+  ++ d+ ++ld in+ l +   kit + ++
  EHU02088.1 364 SQATQKISKVVEENASLIGDMHQQLDGINSFLTTENDKITHLSDN 408
                 567899*********************************986544 PP

>> Polyoma_coat2  Polyomavirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.42   4.2e+02      93     129 ..     127     162 ..     117     166 .. 0.75
   2 ?   10.7   3.3   0.00032      0.32       9     148 ..     289     427 ..     282     428 .] 0.80

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.42
  Polyoma_coat2  93 vaaagaaffgdwdhkvpvvdlaqernmAlqlyrpddy 129
                    +a+  +  + ++ hk +++  a ++ mA++ ++p+d 
     EHU02088.1 127 IANDITDRHEELTHKEAII-TALNNTMAMIEFTPQDE 162
                    5555566677788888888.556889********986 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00032
  Polyoma_coat2   9 dliaevselaaatGlsveailageafaaieveiaslvtvegvlevaeAlaaiglteea..favlsaaptalaglaaliqtvtggsavaaagaaffg 102
                    ++ +++s++aaa+G+s +   +++ + +i  +i +++ +  +l  + A++a    e+   fav++ +   l   a + q+   +s v++  a++ g
     EHU02088.1 289 NVESMASQVAAAAGISDKLNYSAKDIKEIVSTIHNIAGQTNILALNAAIEAARAGEAGrgFAVVAEEVRRL--AASTSQATQKISKVVEENASLIG 382
                    6678899**********999*****************************9987776651155555555544..467789999999*********** PP

  Polyoma_coat2 103 dwdhkvpvvdla.qernmAlqlyrpddylDilFPGvesfsravhyld 148
                    d++++   ++ +   +n  ++    +d +  +F Gv+ f+  +h l 
     EHU02088.1 383 DMHQQLDGINSFlTTENDKITHL--SDNIQEIFSGVNEFVTVIHRLK 427
                    **999988875414445555544..5679999**********99885 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.8   1.8e+03      36      67 ..     121     152 ..     114     158 .. 0.54
   2 ?    7.4   0.5    0.0055       5.5      31      79 ..     285     333 ..     257     337 .. 0.82
   3 ?    7.9   0.1    0.0039       3.9      14      81 ..     359     423 ..     347     427 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.8
     BLOC1_2  36 ykklkdvaaslekkleklnekyeelqpylqqi 67 
                 +kk+ ++a+++++  e+l  k++ +  + + +
  EHU02088.1 121 VKKIIKIANDITDRHEELTHKEAIITALNNTM 152
                 44555555555555555555555554444444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0055
     BLOC1_2  31 aasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79 
                 ++ ++++++++++a ++  ++kln   + +++ ++ i +i  q++ L  
  EHU02088.1 285 QTVRNVESMASQVAAAAGISDKLNYSAKDIKEIVSTIHNIAGQTNILAL 333
                 46678888999999999999*********************99988865 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0039
     BLOC1_2  14 eleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeav 81 
                   ++t++  + + k+ e+ ++ + ++ +++++++++l   n    ++  + ++i++i   v+e+ +++
  EHU02088.1 359 LAASTSQATQKISKVVEENASLIGDMHQQLDGINSFLTTEND---KITHLSDNIQEIFSGVNEFVTVI 423
                 556777788889999999999999999999999999998888...55555666666666666666555 PP

>> FimH_man-bind  FimH, mannose binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.015        15      38      86 ..      65     117 ..      59     192 .. 0.74
   2 ?    0.2   0.0      0.55   5.5e+02      39      80 ..     188     232 ..     184     285 .. 0.74
   3 ?    2.4   0.1      0.11   1.1e+02      13      54 ..     362     403 ..     351     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
                    TEEEE-SSTTT-...-EEEEEEEEEEEHHHHHHEE..EEEEETTEEEEES-SS- CS
  FimH_man-bind  38 qisCkndyggvi...vDyvnLvsGsaygGvLanfk..GsvkyagssYplPltse 86 
                    +++Ck d+  ++     + +L sG +++G  + ++   s+ y +  Y +P++ +
     EHU02088.1  65 RLFCKPDFVRSReyaLFWETLASGQSFSGIFERYRkdNSLLYLSANY-FPVKDK 117
                    68899998777755456679************996336888877766.555443 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.55
                    EEEE-SSTTT--EEE.EEEEEEEEHHHHHHE..EEEEEETTEEEE CS
  FimH_man-bind  39 isCkndyggvivDyv.nLvsGsaygGvLanf..kGsvkyagssYp 80 
                    ++C + + +   D+   +++G a++G  +    +G  ++ +  Y 
     EHU02088.1 188 LFCFDAFYKENPDFWhRIQQGRAFTGRFERVtaSGKRVWLEANYN 232
                    677777666666654268999999999876512566778777775 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.11
                    EEEEEEE---SBEETTSEEEEEGGGTEEEE-SSTTT--EEEE CS
  FimH_man-bind  13 gsanvyvnLepsvevgqnLvvDLsqqisCkndyggvivDyvn 54 
                    ++ +   +++ +ve +  L+ D+ qq+   n++ ++ +D ++
     EHU02088.1 362 STSQATQKISKVVEENASLIGDMHQQLDGINSFLTTENDKIT 403
                    555556678889999********************9999886 PP

>> DUF5100  Domain of unknown function (DUF5100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.011        11       4      49 ..     115     161 ..     113     173 .. 0.87
   2 ?    4.7   0.2     0.025        25       4      40 ..     364     401 ..     361     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
     DUF5100   4 esklekiekiLsikkdlenilesleslelileq.kedeeeiflvPqe 49 
                 + k++ ++ki++i +d+++  e l+  e+i++  +++   i + Pq+
  EHU02088.1 115 KDKHGTVKKIIKIANDITDRHEELTHKEAIITAlNNTMAMIEFTPQD 161
                 7899***************************9977777777778875 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.025
     DUF5100   4 esklekiekiLsikkd.lenilesleslelileqkede 40 
                 ++  +ki k+++ +++ + ++ ++l++++  l++++d+
  EHU02088.1 364 SQATQKISKVVEENASlIGDMHQQLDGINSFLTTENDK 401
                 67789***********99**************995544 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       1.2   1.2e+03      66      88 ..     117     139 ..     113     155 .. 0.58
   2 ?    5.7   4.9     0.018        18      22      84 ..     245     307 ..     239     332 .. 0.82
   3 ?    9.7   0.6   0.00099      0.99      36      76 ..     357     397 ..     330     427 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
      DUF948  66 klekvdplteavadlgesvseln 88 
                 k  +v+++++ ++d+++  +el+
  EHU02088.1 117 KHGTVKKIIKIANDITDRHEELT 139
                 44445555555555544444443 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.018
      DUF948  22 lklkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesv 84 
                 +kl++ ++e   t +++ + +  +++++  ++ ++n++l++  + +e++ + ++a+a +++++
  EHU02088.1 245 IKLASDITERVVTAQDVADIAMTTSEKTSHITVNANDVLSQTVRNVESMASQVAAAAGISDKL 307
                 566666666667788888888888999999999999999999999999999999999998875 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00099
      DUF948  36 eelekqvdpilkevedllakvnelledvneklekvdpltea 76 
                 + l   + + ++++ +++++   l  d++++l+ ++++ + 
  EHU02088.1 357 RRLAASTSQATQKISKVVEENASLIGDMHQQLDGINSFLTT 397
                 44444444444444444444444444444444444444321 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       5.1   5.1e+03      87     116 ..     122     151 ..     115     157 .. 0.59
   2 ?    1.8   0.4      0.22   2.2e+02      43      97 ..     257     308 ..     238     338 .. 0.53
   3 ?   10.1   0.1   0.00061      0.61      43     113 ..     352     426 ..     345     427 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.1
    LOH1CR12  87 skvnelsdqlsriqiiledivpllEtlnel 116
                 +k+ ++ ++++  +  l ++ +++ +ln+ 
  EHU02088.1 122 KKIIKIANDITDRHEELTHKEAIITALNNT 151
                 555556666665555555555555555554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.22
    LOH1CR12  43 cAkavAadqaklverikevdakiitllaelrekqkqyasyaealskvnelsdqls 97 
                 +A+ vA       e++ ++  + + +l++++ + +  as ++a ++   +sd+l 
  EHU02088.1 257 TAQDVADIAMTTSEKTSHITVNANDVLSQTVRNVESMASQVAAAAG---ISDKLN 308
                 4555555555555555555555555555555555544444433333...333333 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00061
    LOH1CR12  43 cAkav...Aadqaklverikevdakiitllaelrekqkqyasyaea.lskvnelsdqlsriqiiledivpllEtl 113
                  A++v   Aa   + +++i +v ++  +l+ +++++ +  +s+  +   k+ +lsd+++ i + +++ v ++ +l
  EHU02088.1 352 VAEEVrrlAASTSQATQKISKVVEENASLIGDMHQQLDGINSFLTTeNDKITHLSDNIQEIFSGVNEFVTVIHRL 426
                 5554433388888999999999899999**************98762689******************9998876 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2       0.7     7e+02      27      62 ..     121     156 ..     114     165 .. 0.79
   2 ?    6.0   0.7     0.016        16      22      62 ..     282     325 ..     275     338 .. 0.63
   3 ?    7.9   0.4    0.0042       4.2      27      63 ..     371     407 ..     350     421 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.7
     NPV_P10  27 vddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 v+++ +  +d+t+ +e+L    a +++l++++  I+
  EHU02088.1 121 VKKIIKIANDITDRHEELTHKEAIITALNNTMAMIE 156
                 666667778888888889999999999999887775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.016
     NPV_P10  22 alqqqvddvqenlpdv...telnekLdaqsaqLaeletkvenIq 62 
                 +l+q v +v++   +v     +++kL+  ++ ++e+ ++++nI 
  EHU02088.1 282 VLSQTVRNVESMASQVaaaAGISDKLNYSAKDIKEIVSTIHNIA 325
                 56666655555554441115577777777777777777777664 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0042
     NPV_P10  27 vddvqenlpdvtelnekLdaqsaqLaeletkvenIqd 63 
                  + v+en   + +++++Ld+++  L++ ++k+++ +d
  EHU02088.1 371 SKVVEENASLIGDMHQQLDGINSFLTTENDKITHLSD 407
                 3457788888999999999999999999998865443 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.6   3.5e+03     145     167 ..     130     152 ..     117     170 .. 0.58
   2 ?    0.7   0.1       0.4     4e+02     141     182 ..     271     312 ..     243     321 .. 0.78
   3 ?    9.5   0.1   0.00079      0.79     108     178 ..     353     427 ..     349     428 .] 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
    KASH_CCD 145 llaekealleektkqieeLklti 167
                  ++++ ++l+ k++ i  L+ t+
  EHU02088.1 130 DITDRHEELTHKEAIITALNNTM 152
                 34455555555555555555443 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.4
    KASH_CCD 141 eleellaekealleektkqieeLkltieEyssiieeLraeks 182
                 ++ +++++ + +l++  +++e+++++++    i ++L    +
  EHU02088.1 271 KTSHITVNANDVLSQTVRNVESMASQVAAAAGISDKLNYSAK 312
                 5678999999999***********999999999888876555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00079
    KASH_CCD 108 qeenikllaekdelkkklkeLlkeka....eLkkqlheleellaekealleektkqieeLkltieEyssiieeLr 178
                  ee ++l+a +++  +k+ + ++e+a    ++++ql+ +++ l++ +  ++    +i+e+ + ++E+ ++i  L+
  EHU02088.1 353 AEEVRRLAASTSQATQKISKVVEENAsligDMHQQLDGINSFLTTENDKITHLSDNIQEIFSGVNEFVTVIHRLK 427
                 689999999999999999999999983333568999999999999999999999999999999999999999987 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.18   1.8e+02      85     121 ..     120     156 ..     114     183 .. 0.85
   2 ?    3.6   1.0     0.064        64      59     105 ..     278     323 ..     240     338 .. 0.53
   3 ?    8.7   1.0    0.0017       1.7      43     113 ..     356     426 ..     350     428 .] 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.18
     DUF1664  85 ikeevtevredlseigedvesvkeaveglesklerie 121
                 + +++ ++ +d+++ +e++++ +++++ l+++++ ie
  EHU02088.1 120 TVKKIIKIANDITDRHEELTHKEAIITALNNTMAMIE 156
                 6678888888999999999999999999998888887 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.064
     DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                 ++ + Ls+ + +v+ ++ +q ++++ i+++++   +d++ei + +++
  EHU02088.1 278 NANDVLSQTVRNVE-SMASQVAAAAGISDKLNYSAKDIKEIVSTIHN 323
                 33334444444443.23333444444444444444444444444433 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0017
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegl 113
                 v +++ +  q  ++++++ ++ +s i  + ++ld  +   +  ++++t+++++++ei + v++  ++++ l
  EHU02088.1 356 VRRLAASTSQATQKISKVVEENASLIGDMHQQLDGINSFLTTENDKITHLSDNIQEIFSGVNEFVTVIHRL 426
                 66677777888899999999999999999999999999999999999999999999999999998888877 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.5     0.046        45      19      85 ..     251     312 ..     238     316 .. 0.68
   2 ?    4.4   0.8     0.052        52      11      63 ..     289     341 ..     280     350 .. 0.66
   3 ?    7.5   0.6    0.0057       5.7       6      37 ..     350     381 ..     346     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.046
  T7SS_ESX_EspC  19 hdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAa 85 
                         +++ +a++ a + +   ++ +  i++  nd +++ +++  ++++++ aa+++++dkL+ +A+
     EHU02088.1 251 I---TERVVTAQDVA-DIAMTTSEKTSHITVNANDVLSQTVRNV-ESMASQVAAAAGISDKLNYSAK 312
                    3...34444455554.4445555555678888888888887765.56777888899******99996 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.052
  T7SS_ESX_EspC  11 hlrelaakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarr 63 
                     + ++a+++ ++a+  ++++ +a++ ++ v++ h + ++   +a++aa +a r
     EHU02088.1 289 NVESMASQVAAAAGISDKLNYSAKDIKEIVSTIHNIAGQTNILALNAAIEAAR 341
                    56677777777766666666666666666666677776666778877766554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0057
  T7SS_ESX_EspC   6 sVdpdhlrelaakhdevaaeiasavaaaagas 37 
                     V+++++r+laa   ++ ++i+++v+  a   
     EHU02088.1 350 AVVAEEVRRLAASTSQATQKISKVVEENASLI 381
                    599*********************99876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1427  (0.0795917); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3104.78
//
Query:       EHU02089.1  [L=131]
Description: hypothetical protein CKS_0597 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00017   22.1   0.0     0.0002   21.9   0.0    1.1  1  4HBT_2           Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.017   15.3   0.0      0.024   14.8   0.0    1.3  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.2e-08    0.0002       5     119 ..      12     122 ..       8     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.2e-08
      4HBT_2   5 dvDlnghlnnarylryleearvkfle.rtglksrsiarrgiglilssahvryrrplkfpdrltvefrv.ididaktliiehrflsnadgkkaarveeri 101
                  +D+ g ++   y  y+e  r  f++ + g++ ++  ++g + +l + ++r++++lk +d+++v++ +   ++++++ + +++l   d+   a+++ + 
  EHU02089.1  12 HIDFQGVVDGLYYPFYMEWTRHAFMKeHLGVDLEAEFAEGRIHMLLEYTLRFKKSLKKGDEMQVTCALaANEKRNRVNFVQQILV--DNVVYAEAVFTG 108
                 689999999888888888899999986778899999999*****************************777************99..887788888888 PP

      4HBT_2 102 vvmdygkrskkapvPpel 119
                 ++   g     + +P +l
  EHU02089.1 109 TCLEKGR----PVIPAFL 122
                 8877733....4555555 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.7e-06     0.024      51     112 ..      22      91 ..       5     105 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.7e-06
  MaoC_dehydrat_N  51 ptflivlatkapell.ealgid.....lsrllh..geqefeyhepiraGDelttesriadvydkkgvGal 112
                        ++++++++++ ++ e lg+d      ++ +h  +e ++++++ +++GDe ++++ +a+ ++++ v  +
       EHU02089.1  22 LYYPFYMEWTRHAFMkEHLGVDleaefAEGRIHmlLEYTLRFKKSLKKGDEMQVTCALAANEKRNRVNFV 91 
                      5689*****998777788888833334445666337889999*****************98887544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 990.94
//
Query:       EHU02090.1  [L=525]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-51  172.3  30.8    1.6e-50  171.3  17.5    2.6  2  MCPsignal   Methyl-accepting chemotaxis protein (MCP) signall
    6.2e-33  113.6   0.3    6.2e-33  113.6   0.3    4.0  4  CHASE3      CHASE3 domain
  ------ inclusion threshold ------
      0.067   13.3   8.5        1.1    9.3   2.2    3.1  3  Mod_r       Modifier of rudimentary (Mod(r)) protein
       0.24   11.4   1.6        4.5    7.3   0.1    3.0  3  Vps23_core  Vps23 core domain
        3.6    6.5   8.7       0.31    9.9   1.5    2.3  2  IFT57       Intra-flagellar transport protein 57
        5.5    5.8   8.9        2.2    7.1   2.1    2.6  3  Spc7        Spc7 kinetochore protein
        7.8    6.3  12.5        9.7    6.0   2.1    2.5  2  NACHT_N     N-terminal domain of NWD NACHT-NTPase


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   5.0    0.0032       8.1     110     170 ..     255     312 ..     214     319 .. 0.70
   2 !  171.3  17.5   6.3e-54   1.6e-50       3     172 .]     327     482 ..     324     482 .. 0.98

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 110 eetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                 e  rq   + +++v+  +++ + i ++++e+a+   ++a+ +eeq+a++e+++ ++ee+++
  EHU02090.1 255 EAMRQ---QLVTIVSGIQSSAELINNSASEIAQGNIDLAQRTEEQAAALEQTAASMEELTA 312
                 33333...34555555556666677888888888888999999999999999988888764 PP

  == domain 2  score: 171.3 bits;  conditional E-value: 6.3e-54
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
   MCPsignal   3 laeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqke 101
                  a+++s+ A +gg +v++vv++m++i++ss ++++ii+Vi++ia+QTN+LALNAa+EAARAGe GrGFaVVA+EVr+LA rs  aakei++li      
  EHU02090.1 327 QADTTSHVALQGGDVVKQVVETMRSISESSGKVAEIISVIEGIAFQTNILALNAAVEAARAGEGGRGFAVVAGEVRSLALRSSTAAKEIKDLI------ 419
                 68999****************************************************************************************...... PP

                 ........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 102 indsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                         ++++++v++gs l++++g++++eiv++v+ v++++ ei+ as+eqs++i +v+ av+++++vt
  EHU02090.1 420 --------TQSVEHVAKGSGLAKQAGNTMEEIVKSVQGVTTIMGEITIASDEQSNGIGQVSIAVSQMDQVT 482
                 ........9999*********************************************************97 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.3   2.4e-36   6.2e-33       1     137 [.      37     178 ..      37     179 .. 0.97
   2 !    5.8   2.8    0.0046        12      59     104 ..     280     324 ..     250     362 .. 0.62
   3 ?    0.9   0.1      0.16     4e+02      72     112 ..     412     451 ..     406     464 .. 0.80
   4 ?    0.5   0.8      0.21   5.3e+02      67     106 ..     463     501 ..     440     514 .. 0.68

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 2.4e-36
      CHASE3   1 aaewvehtqevlanlerllsalvdaEtgqRGYlltgdeefLepyeqaraeiqealeelreltadnpeqqerldrlealieqklaeleetialrre.... 95 
                 a++w  h+++v+   + +l+++v++Etg+RG++++g+e+fL+p++++++++++++++lr++tadn +qq+rl+ l  l+++  a+ +++ialrr+    
  EHU02090.1  37 ANSWNIHSYKVMSLSDSMLTDMVNMETGVRGFVISGNEAFLAPFNAGKTAFDQKYNQLRTMTADNASQQQRLTSLLDLHNSVQAIDDQLIALRRQvngg 135
                 578*********************************************************************************************977 PP

      CHASE3  96 .ggleaalalvrsdegkelmdeiraliaemrdeerrllaqrea 137
                  + l+a    ++ ++ k+ md+ ra ++ ++++e  lla r+ 
  EHU02090.1 136 qQPLDALTHFFQEGRDKAFMDRYRAVATGFNNAESSLLATRSD 178
                 66777999*******************************9975 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0046
      CHASE3  59 reltadnpeqqerldrlealieqklaeleetialrreggleaalal 104
                 +e+ ++n + ++r ++  a+ eq  a +ee+ a +r++++  a++ 
  EHU02090.1 280 SEIAQGNIDLAQRTEEQAAALEQTAASMEELTATVRQNTDN-ARQA 324
                 34445666666666666666666666666666666663322.2222 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
      CHASE3  72 ldrlealieqklaeleetialrreggleaalalvrsdegke 112
                  ++++ li+q ++++++   l++++g+ +++++v+s +g +
  EHU02090.1 412 AKEIKDLITQSVEHVAKGSGLAKQAGN-TMEEIVKSVQGVT 451
                 578999******999999999999666.8999999988854 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.21
      CHASE3  67 eqqerldrlealieqklaeleetialrreggleaalalvr 106
                 eq   + +++ ++ q  ++ ++  al+++    aa+ +v 
  EHU02090.1 463 EQSNGIGQVSIAVSQMDQVTQQNAALVQQ-VSSAAQGMVE 501
                 56666667777777777777777777776.3334444444 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0046        12      74     143 ..      84     157 ..      49     160 .. 0.66
   2 ?    9.3   2.2   0.00045       1.1      19      92 ..     255     329 ..     250     355 .. 0.86
   3 ?   -0.2   0.1      0.37   9.6e+02      69      93 ..     470     494 ..     404     509 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0046
       Mod_r  74 ekefeekeqeldell....qkfspdallarLqtavaeaeeeSealaeeflegeieldeFvkefkekRklyHlrk 143
                 +++f++k ++l ++     ++ +  + l  L+++v++++++  al  ++  g+++ld+    f+e R ++++ +
  EHU02090.1  84 KTAFDQKYNQLRTMTadnaSQQQRLTSLLDLHNSVQAIDDQLIALRRQVNGGQQPLDALTHFFQEGRDKAFMDR 157
                 55666666666666664322333334444467777777777777777777777777777777777777777665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00045
       Mod_r  19 ealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldellqkfs 92 
                 ea+ ++l   v  ++++ e + ++  ++a+ n++l ++ ee+ + l+++  +++el +++++ + +  ++ ++ +
  EHU02090.1 255 EAMRQQLvTIVSGIQSSAELINNSASEIAQGNIDLAQRTEEQAAALEQTAASMEELTATVRQNTDNARQANSQAD 329
                 55555554668889999999999************************************9999999888876654 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.37
       Mod_r  69 elkelekefeekeqeldellqkfsp 93 
                 ++  + +++++ +q+  +l+q++s+
  EHU02090.1 470 QVSIAVSQMDQVTQQNAALVQQVSS 494
                 3333333333333333333333333 PP

>> Vps23_core  Vps23 core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   4.4e+03       8      22 ..      89     103 ..      86     108 .. 0.81
   2 ?    7.3   0.1    0.0018       4.5      11      43 ..     109     141 ..      97     147 .. 0.90
   3 ?    1.6   0.1       0.1   2.7e+02       9      42 ..     257     290 ..     250     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
  Vps23_core   8 plsnqllelvaedkA 22 
                   +nql +++a++++
  EHU02090.1  89 QKYNQLRTMTADNAS 103
                 6799**999998765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0018
  Vps23_core  11 nqllelvaedkAieDtiylLdkaldrgkidldt 43 
                   ll+l+   +Ai+D + +L + ++ g+ +ld+
  EHU02090.1 109 TSLLDLHNSVQAIDDQLIALRRQVNGGQQPLDA 141
                 579**********************99988876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
  Vps23_core   9 lsnqllelvaedkAieDtiylLdkaldrgkidld 42 
                 + +ql+++v+ +++  ++i+       +g+idl 
  EHU02090.1 257 MRQQLVTIVSGIQSSAELINNSASEIAQGNIDLA 290
                 678******************9999999999986 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.5   0.00012      0.31     235     317 ..     249     331 ..     244     341 .. 0.90
   2 ?   -0.2   0.9      0.15   3.8e+02     235     332 ..     414     510 ..     404     517 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
       IFT57 235 sieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekv 317
                 s+ +sl+ +++ql  + + i+ + e i++  + + + + +l q  +e+ + l+++  ++++l+++v + t++ ++ + + +++
  EHU02090.1 249 SLMASLEAMRQQLVTIVSGIQSSAELINNSASEIAQGNIDLAQRTEEQAAALEQTAASMEELTATVRQNTDNARQANSQADTT 331
                 677889999999******************************************************99999999999888876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.15
       IFT57 235 sieeslpetksqlkk...lhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtD 330
                 +i++ ++++ ++++k   l ++  +t+e+i +  + ++    + + e   a++e s+   +++ + +++ + t++ a + ++++++ q m e+++ + +
  EHU02090.1 414 EIKDLITQSVEHVAKgsgLAKQAGNTMEEIVKSVQGVT----TIMGEITIASDEQSNGIGQVSIAVSQMDQVTQQNAALVQQVSSAAQGMVEQTTLLRN 508
                 45555555444444422255555555555555544333....344444445555555555555556666666777777777777777777777766655 PP

       IFT57 331 gs 332
                 + 
  EHU02090.1 509 AV 510
                 55 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.024        62     177     241 ..      85     151 ..      74     171 .. 0.76
   2 ?    7.1   2.1   0.00085       2.2     136     212 ..     253     329 ..     249     377 .. 0.60
   3 ?   -2.6   0.2      0.77     2e+03     248     248 ..     473     473 ..     409     510 .. 0.53

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.024
        Spc7 177 aeleeeleklqeaaeeles..idkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 ++  +++++l+++ ++ +s     ++L  l++++++++ ++ +++++++  q+ l++l+  ++e ++
  EHU02090.1  85 TAFDQKYNQLRTMTADNASqqQRLTSLLDLHNSVQAIDDQLIALRRQVNGGQQPLDALTHFFQEGRD 151
                 5566778888885544333113367788899999999999999999999999999999888877655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00085
        Spc7 136 llegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelk 212
                  le ++++l  +++g+++ +el++++ +e+ +   +l ++ +e  + le+  +  eel++  +++  ++r++ ++++
  EHU02090.1 253 SLEAMRQQLVTIVSGIQSSAELINNSASEIAQGNIDLAQRTEEQAAALEQTAASMEELTATVRQNTDNARQANSQAD 329
                 56666677777777777777777777766665555555555544444444444444444444444444444444443 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.77
        Spc7 248 e 248
                  
  EHU02090.1 473 I 473
                 1 PP

>> NACHT_N  N-terminal domain of NWD NACHT-NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   3.0    0.0074        19      31      99 ..     281     349 ..     252     369 .. 0.81
   2 ?    6.0   2.1    0.0038       9.7      49     125 ..     407     487 ..     397     508 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0074
     NACHT_N  31 ekesskkeeeseekeeeseeekrqeqlkrlvekglkrvekkkkakegiaeaaevvlavkdlideavkas 99 
                 e ++ +   +++++e++   e++ + +++l  +  + ++++++a+++++++ +v l+  d++ ++v+++
  EHU02090.1 281 EIAQGNIDLAQRTEEQAAALEQTAASMEELTATVRQNTDNARQANSQADTTSHVALQGGDVVKQVVETM 349
                 4444455566777888888899999*********************************99999999876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0038
     NACHT_N  49 eeekrqeqlkrlvekglkrvekkk....kakegiaeaaevvlavkdlideavkaspeaalaWagvclvleiltnpvtaaka 125
                 ++++  +++k+l+++ ++ v+k +    +a ++++e+++ v+ v ++++e+  as+e +     v++++  + + +++++a
  EHU02090.1 407 RSSTAAKEIKDLITQSVEHVAKGSglakQAGNTMEEIVKSVQGVTTIMGEITIASDEQSNGIGQVSIAVSQMDQVTQQNAA 487
                 5677788999************99888899999************************999999999999888777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1904  (0.106197); expected 358.6 (0.02)
Passed bias filter:                      770  (0.0429472); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.38
# Mc/sec: 4138.68
//
Query:       EHU02091.1  [L=80]
Description: hypothetical protein CKS_0600 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 660.22
//
Query:       EHU02092.1  [L=312]
Description: GGDEF domain protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-30  105.8   0.0    2.8e-30  105.2   0.0    1.3  1  GGDEF     Diguanylate cyclase, GGDEF domain
    3.9e-19   68.7   0.2    8.4e-19   67.7   0.1    1.7  2  PAS_3     PAS fold
    0.00013   22.2   0.0    0.00097   19.4   0.0    2.2  2  PAS_9     PAS domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   4.7e-34   2.8e-30       1     159 [.     159     307 ..     159     309 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 4.7e-34
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a+hD+lT+L NR +l ++++   ++a      l + ++dldnFk++ndt+Gh +GDevL++++ r   +  ++ +++RlggdeF++l+p + ++     
  EHU02092.1 159 AMHDPLTQLTNRHALINHFRDMKKKA------LCIAFIDLDNFKHVNDTLGHRSGDEVLIQLSLRFIAACPPGVIIGRLGGDEFVLLIPLALTH--PLT 249
                 78************999998765555......889******************************************************99976..888 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagr 159
                 +++ ++ l++  +p+el++ +  + +siG++ ++  e e++++ l +Ade +y+ Kk+g+
  EHU02092.1 250 KRLTHACLNAALQPFELANGTAVIGASIGVVQVE--EPENFDSALARADETMYRIKKNGK 307
                 8999999***********9999***********5..99********************97 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.1   1.4e-22   8.4e-19       4      89 .]      55     142 ..      52     142 .. 0.96
   2 ?   -3.4   0.0       2.1   1.3e+04      43      60 ..     289     304 ..     286     307 .. 0.60

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.4e-22
       PAS_3   4 vserveeilGyspeellgkveswldlvhpeDrervrealqealkkge.pyegeyRirrkdGeyrwveararvi.rdengkpvrvigva 89 
                  ++r+  +lG++p e  ++++ w++++hpeD + v +a+ +++++++  ye  +R++ k G+++wv +r+rv  +de+g+p++v g++
  EHU02092.1  55 FNRRWGSMLGFQPKETDAHFDVWKSCLHPEDAADVLKAFYDHIEGKApFYEALHRMIGKTGKITWVLDRGRVSeWDEQGRPIKVTGTH 142
                 689********************************************666999*********************************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.1
       PAS_3  43 qealkkgepyegeyRirr 60 
                 + al++    e++yRi++
  EHU02092.1 289 DSALARAD--ETMYRIKK 304
                 55555555..67888764 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.6e-07   0.00097       8     104 .]      47     147 ..      39     147 .. 0.86
   2 ?   -0.3   0.0      0.21   1.3e+03      53      84 ..     176     218 ..     157     232 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.6e-07
       PAS_9   8 npdgrilyaNeaalrllGyspee...vlgksitdlfvtdpeanerlraaleqgrk..kerevevvlirkngetfwvlltaspvkdd.dgelvgiivilr 100
                  p g+++ +N+ +  +lG++p+e         ++l   +++a++ l+a+++ ++   +++e    +i k+g+  wvl + +   +d +g+ + + ++ +
  EHU02092.1  47 IPTGKLVIFNRRWGSMLGFQPKEtdaHFDVWKSCLH--PEDAADVLKAFYDHIEGkaPFYEALHRMIGKTGKITWVLDRGRVSEWDeQGRPIKVTGTHI 143
                 58999*************998885445555555555..*************************************998888885555************ PP

       PAS_9 101 Dite 104
                 D+t+
  EHU02092.1 144 DMTK 147
                 **95 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
       PAS_9  53 aleqgrk...........kerevevvlirkngetfwvlltasp 84 
                  +++++k           ++++v+ +l +++g +++++l+++ 
  EHU02092.1 176 HFRDMKKkalciafidldNFKHVNDTLGHRSGDEVLIQLSLRF 218
                 4444444577777777777999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2714.88
//
Query:       EHU02093.1  [L=276]
Description: putative alpha/beta hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-29  103.4   0.1    3.8e-27   95.6   0.1    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
      2e-22   79.6   0.2    3.2e-14   52.8   0.1    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
    1.1e-19   71.9   0.3    1.4e-19   71.6   0.3    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.4e-08   33.7   0.1    8.5e-06   25.4   0.0    2.3  2  Peptidase_S9   Prolyl oligopeptidase family
      3e-05   23.7   0.1    0.00067   19.3   0.0    2.4  2  DLH            Dienelactone hydrolase family
    3.9e-05   23.6   0.0      0.021   14.6   0.0    2.1  2  Abhydrolase_2  Phospholipase/Carboxylesterase
    9.6e-05   22.1   0.0       0.25   10.9   0.0    2.2  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    0.00023   21.2   0.0    0.00035   20.7   0.0    1.3  1  Abhydrolase_4  TAP-like protein
     0.0011   18.4   0.1     0.0067   15.8   0.0    2.0  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
     0.0053   16.5   0.0        1.1    9.0   0.0    2.6  3  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.027   14.1   0.0       0.13   12.0   0.0    1.9  2  FSH1           Serine hydrolase (FSH1)
      0.085   11.5   0.0       0.12   11.0   0.0    1.3  1  Ndr            Ndr family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.1   2.5e-30   3.8e-27       2     250 ..      22     252 ..      21     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 2.5e-30
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.GG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.pe 96 
                    ++++ hG+p  +d+w      + La++g++vi++D rG+g+S+ +++     y  +++add++ +  +l ++ +tlvG+SmGG  ++ y  +y   
     EHU02093.1  22 PVLFSHGWPLDADMWDS--QLNFLAERGYRVIAFDRRGFGRSDQPWEG----YDYDTFADDIHSLITHLQLKDVTLVGFSMGGGDVSRYIGKYgTG 111
                    89***************..9999***********************75....66666*************************************** PP

                    GEEEEEEESE.........CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHH CS
  Abhydrolase_1  97 rVkalvllga.........idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslat 183
                    +Vk+lvllga          +p     +  + + +++ d   +++ d+a +  g+ ++ ++    +          +  ++ +          +  
     EHU02093.1 112 NVKGLVLLGAvtpvfgkkdDHPEGVEKSVFDDIKQGLLDDRAQFIKDFAAPFYGTNAGQSVSEGVLT---------QTLNMALLA--------SLK 190
                    **********666655555555555555555555555555555555555555555555555555555.........555555555........456 PP

                    HHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC.HTSEEEEEEETCSS CS
  Abhydrolase_1 184 galksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaql.lpkkrlvvisdagH 250
                    g l ++  +++td+++ l r +       ptl+i+g++D++vp +a  +la+  + +++l++++++ H
     EHU02093.1 191 GTLDCVTAFSETDFRADLARVDV------PTLIIHGSHDQIVPFEATGKLAHElITGSELKIYDQGPH 252
                    77899999********9999999......***************999999988899988888888877 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   2.1e-17   3.2e-14       7     110 ..      23     122 ..      20     161 .. 0.91
   2 !   25.1   0.0   6.3e-09   9.4e-06     183     233 ..     204     253 ..     179     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.1e-17
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd.kvag 103
                  v+++HG    ++  +   + La++G+ v+a+D rG+Grs  + ++  ++d++ dD+++++++++     + ++l+G SmGG  + +y+ +y   +v+g
   EHU02093.1  23 VLFSHGWPLDADMWDSQLNFLAERGYRVIAFDRRGFGRS-DQPWEGYDYDTFADDIHSLITHLQ----LKDVTLVGFSMGGGDVSRYIGKYGTgNVKG 115
                  788999999999999999*********************.6677779**************999....5679****************999987999* PP

  Hydrolase_4 104 lilsaPa 110
                  l+l +++
   EHU02093.1 116 LVLLGAV 122
                  ***9976 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 6.3e-09
  Hydrolase_4 183 leeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                   +++ a++++P+l++hG++D++v+ ea+ +l+ +l     +lk+y+++ H 
   EHU02093.1 204 FRADLARVDVPTLIIHGSHDQIVPFEATGKLAHELIT-GSELKIYDQGPHG 253
                  345667778**************************95.**********996 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.3   9.4e-23   1.4e-19       1     207 [.      23     252 ..      23     265 .. 0.63

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 9.4e-23
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla......l 87 
                    vl+ HG +++a++W  ++L  l+ +g++v+a+D++G+Grsd p+ +++    ++d++ l+++l    ++v lvG S+GG  +++   +        
     EHU02093.1  23 VLFSHGWPLDADMW-DSQLNFLAERGYRVIAFDRRGFGRSDQPWEGYDYdtfADDIHSLITHLQ--LKDVTLVGFSMGGGDVSR---YIgkygtgN 112
                    799***********.35777777777999***************66644334566699999996..**************9999...777778986 PP

                    .EE.EEES-..----TTT.S----TTHHHHHHTT-CCCCHCCH.....S-HSCCCCHHHCCCCHCHCCCGHH..............HHCCHHC... CS
  Abhydrolase_6  88 vvg.vlldppptalpagl.laaalelllallallrllawlsre.....plprlfladedadaawrarlarla..............allaglg... 159
                    v g vll +   ++p     ++ +e +++     ++ ++l  +     +++ +f++     +  ++ ++++                +l+++    
     EHU02093.1 113 VKGlVLLGA---VTPVFGkKDDHPEGVEKSVFDDIKQGLLDDRaqfikDFAAPFYG-----TNAGQSVSEGVltqtlnmallaslkGTLDCVTafs 200
                    6778*****...44444445555555555555444433332111222223335555.....33333333333333333333333332222222222 PP

                    .HTTCCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH...STTEEETCE...SSS CS
  Abhydrolase_6 160 .llpaaawadlpvpllvl.ggeDplvprllerlla...qagarlpvvlpgaGH 207
                     +  +a++a++ vp+l++ g+ D++vp  +   la   ++g +l +++ ++ H
     EHU02093.1 201 eTDFRADLARVDVPTLIIhGSHDQIVPFEATGKLAhelITGSEL-KIYDQGPH 252
                    34458899999999999967999999955554444566677777.77777777 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0046       6.8       5      33 ..      38      66 ..      34     101 .. 0.85
   2 !   25.4   0.0   5.7e-09   8.5e-06     141     207 ..     209     272 ..     193     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0046
                  HHHHHHHCCT-EEEEE--TTSSTTHCHHH CS
  Peptidase_S9  5 selqlladrGyvvvvanirGsggyGeafh 33
                  s+l++la+rGy v++ + rG g   + ++
    EHU02093.1 38 SQLNFLAERGYRVIAFDRRGFGRSDQPWE 66
                  67899***************999988887 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5.7e-09
                   -.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHH CS
  Peptidase_S9 141 k.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlke 207
                   + +++p+L+ihG +D+ vp++ + kl+++L      ++l+i+ +  Hg++  +++++  ++llaFl++
    EHU02093.1 209 ArVDVPTLIIHGSHDQIVPFEATGKLAHELIT---GSELKIYDQGPHGFA-VTHQAQLNNDLLAFLQN 272
                   34899*************************97...789*********999.88999*********986 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.098   1.5e+02      96     116 ..      85     105 ..      69     119 .. 0.75
   2 !   19.3   0.0   4.5e-07   0.00067     120     198 ..     191     263 ..     158     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.098
         DLH  96 stkkvgvvGfCmGGalallla 116
                 + k v +vGf mGG  +  ++
  EHU02093.1  85 QLKDVTLVGFSMGGGDVSRYI 105
                 45889********98665555 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 4.5e-07
         DLH 120 pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresyn 198
                  ++d++ af  +      ++ a++ +p l+++g +D+++p++++ kl+ +l++     elk+Y++  H+Fa +++++ n
  EHU02093.1 191 GTLDCVTAFSET---DFRADLARVDVPTLIIHGSHDQIVPFEATGKLAHELIT---GSELKIYDQGPHGFAVTHQAQLN 263
                 466666666553...3344567899*************************954...679************99887655 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0033       4.9     103     157 ..      85     140 ..      71     151 .. 0.85
   2 !   14.6   0.0   1.4e-05     0.021     124     199 ..     177     252 ..     169     270 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0033
                    -GGGEEEEEETHHH.HHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG- CS
  Abhydrolase_2 103 pssriiigGFSqGa.alalylaltlpkklggivafsgalplsqklessatavtkkl 157
                    + +++ ++GFS+G+  ++ y ++  +  ++g v ++ + p   k  +++ +v k +
     EHU02093.1  85 QLKDVTLVGFSMGGgDVSRYIGKYGTGNVKGLVLLGAVTPVFGKKDDHPEGVEKSV 140
                    568999******852799999999999********999999999999999888766 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.4e-05
                    HT-SS--SEEEEES---TTGGGTTTTS-GGG...GG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--S CS
  Abhydrolase_2 124 ltlpkklggivafsgalplsqklessatavt...kklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaH 199
                    lt+++ ++   ++ g+l   +++++  ++     +++p l iHg+ D++vp+    +++  l++     elk+y ++ H
     EHU02093.1 177 LTQTLNMALLASLKGTLDCVTAFSETDFRADlarVDVPTLIIHGSHDQIVPFEATGKLAHELITG---SELKIYDQGPH 252
                    666667777777778887778887776665555699***************97655544444433...34566665555 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00017      0.25      46      85 ..      36      75 ..      12      84 .. 0.77
   2 !    9.3   0.0    0.0005      0.74     217     249 ..     201     234 ..     152     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                   CHGGGHHHHHTT-EEEEEE-TTSTTS-S---TTTTTHHHH CS
  Peptidase_S15 46 lelqdkvfvarGYavVvqdvrGtggSeGeftvgdsdeaed 85
                   ++ q +++++rGY v+  d rG+g S+  ++  d+d  +d
     EHU02093.1 36 WDSQLNFLAERGYRVIAFDRRGFGRSDQPWEGYDYDTFAD 75
                   34455559******************98888877666555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0005
                    TT-HHHHHCT--S-EEEEEECCSSTTC.CHHHHH CS
  Peptidase_S15 217 drnlsedadkvkapvllvgGwnDwnvk.ngaikl 249
                    + +++ d+++v++p+l+++G +D++v  +++ kl
     EHU02093.1 201 ETDFRADLARVDVPTLIIHGSHDQIVPfEATGKL 234
                    56677899***************99987766665 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.3e-07   0.00035      31      95 ..     209     274 ..     188     276 .] 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.3e-07
  Abhydrolase_4  31 akgaapvLllqnerDpaTPyegakklakalggavlv.tvegeGHgalaagntCvdkavdaYLltGe 95 
                    a++++p+L++ + +D ++P+e + kla++l  ++ + +++++ Hg+  ++++ +++ + a+L++ +
     EHU02093.1 209 ARVDVPTLIIHGSHDQIVPFEATGKLAHELITGSELkIYDQGPHGFAVTHQAQLNNDLLAFLQNSR 274
                    45689*************************99655505555567766699999********99875 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.5e-06    0.0067      94     127 ..      78     111 ..      70     130 .. 0.86
   2 ?   -0.2   0.0      0.33   4.9e+02      10      21 ..     211     222 ..     205     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.5e-06
      DUF915  94 seLkkkYnikkfnavGhSmGglaltsYleeyadd 127
                 + L  + ++k + +vG+SmGg ++ +Y+ +y+  
  EHU02093.1  78 HSLITHLQLKDVTLVGFSMGGGDVSRYIGKYGTG 111
                 567788899**********************975 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
      DUF915  10 keiPtifihGyg 21 
                    Pt+ ihG++
  EHU02093.1 211 VDVPTLIIHGSH 222
                 678*******96 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         2     3e+03       4      30 ..      25      51 ..      23      54 .. 0.77
   2 !    9.0   0.0   0.00076       1.1      47      89 ..      78     121 ..      72     137 .. 0.79
   3 ?    4.6   0.0     0.016        24      93     131 ..     205     243 ..     168     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2
  Abhydrolase_5  4 fYpGakveaesYaelaeklaksGyevv 30
                   f  G   +a  +   ++ la+ Gy v+
     EHU02093.1 25 FSHGWPLDADMWDSQLNFLAERGYRVI 51
                   5566667777788888999*****997 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00076
  Abhydrolase_5  47 eeiikeapklekfvvgGhslGGvvasrfaaeee..kiegvvflas 89 
                    +++i  + +l++  + G s+GG  +sr++ + +  +++g+v+l++
     EHU02093.1  78 HSLIT-HLQLKDVTLVGFSMGGGDVSRYIGKYGtgNVKGLVLLGA 121
                    55555.556888999**************9763349*******87 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.016
  Abhydrolase_5  93 kdelselskkvlsivgteDgvlnvkslekakkflpkdtk 131
                    + +l +  +++l i g++D++++++   k ++ l   ++
     EHU02093.1 205 RADLARVDVPTLIIHGSHDQIVPFEATGKLAHELITGSE 243
                    567999999***************999888877766555 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.5   7.5e+02      85     114 ..      72      99 ..      54     129 .. 0.67
   2 ?   12.0   0.0   8.4e-05      0.13     157     192 ..     208     243 ..     170     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.5
        FSH1  85 gleesldavkdyikengpfdGiiGFSqGaa 114
                  + + +  +  +++ +   + ++GFS G+ 
  EHU02093.1  72 TFADDIHSLITHLQLKD--VTLVGFSMGGG 99 
                 44444444444444444..67999999986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 8.4e-05
        FSH1 157 edkiqtptLhvlGelDtvvdeerseaLaeafknssk 192
                   ++ +ptL ++G+ D++v+ e + +La+     s+
  EHU02093.1 208 LARVDVPTLIIHGSHDQIVPFEATGKLAHELITGSE 243
                 46789******************9999987655454 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.3e-05      0.12      83     134 ..      71     123 ..      65     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.3e-05
                 HHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHS.GGGEEEEEEES--- CS
         Ndr  83 ddladqllavldhfklksviglGvgaGAyilarfalkh.perveglvLinits 134
                 d  ad++ ++++h++lk v  +G   G   ++r+  k+    v+glvL+ + +
  EHU02093.1  71 DTFADDIHSLITHLQLKDVTLVGFSMGGGDVSRYIGKYgTGNVKGLVLLGAVT 123
                 678*************************99****99993469******97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1989.83
//
Query:       EHU02094.1  [L=54]
Description: hypothetical protein CKS_0603 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.4  11.8    1.8e-09   37.6   5.3    2.1  2  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   5.3   9.9e-14   1.8e-09       1      21 []      10      30 ..      10      30 .. 0.98
   2 !   30.2   0.5     2e-11   3.6e-07       1      20 [.      32      51 ..      32      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 9.9e-14
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nFA D+E+a+E+GrKGGq+S+
  EHU02094.1 10 NFAADKERAAEAGRKGGQNSG 30
                9*******************8 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2e-11
         KGG  1 nFAnDpEkarEIGrKGGqaS 20
                nF+nDp++a E+GrKGG+ S
  EHU02094.1 32 NFKNDPQRAIEAGRKGGKVS 51
                9****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                       91  (0.00507558); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 445.74
//
Query:       EHU02095.1  [L=165]
Description: uncharacterized DUF892 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-54  183.6   7.8    2.9e-54  183.4   7.8    1.0  1  DUF892        Domain of unknown function (DUF892)
  ------ inclusion threshold ------
      0.019   14.9   0.2       0.39   10.7   0.0    2.6  3  RPT           A repeated domain in UCH-protein
      0.021   15.3   0.7       0.16   12.4   0.1    2.4  2  FumaraseC_C   Fumarase C C-terminus
      0.042   13.8   0.4       0.35   10.8   0.0    2.3  2  Sec20         Sec20
      0.053   13.9   2.6       0.14   12.6   0.5    2.0  2  Rubrerythrin  Rubrerythrin


Domain annotation for each model (and alignments):
>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4   7.8   8.2e-58   2.9e-54       1     154 [.       5     158 ..       5     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.4 bits;  conditional E-value: 8.2e-58
                 ..HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-------.-HHHHTTT-----------THHHHHHH. CS
      DUF892   1 tleelfvdeLrDlyaaEkqllkalpkmakaaespeLkaaleqHleeTegqierLeqvferl.gesasekkcdamegliaegqelieeaaedeslkdaal 98 
                 tl++lf++ L D+y+aEkq+ +alpkma+aa++++L aa++qHleeT+gqierL+++++   + + +++kc a egl++e+qe+ie  +e+++++d +l
  EHU02095.1   5 TLNDLFIHDLSDVYSAEKQIARALPKMARAASDENLIAAFNQHLEETRGQIERLDELVDVTpEVKIKRMKCHALEGLVEEAQEIIES-VEKGEVRDQGL 102
                 699********************************************************9967799********************9.*********** PP

                 ..HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      DUF892  99 iaaaqavehyEiAsYgtLialAeqlgekeaaklLeqtleeekatdekltelaeslv 154
                 i+aaq+vehyEiA+YgtL alA++lg+++aaklL qtl+eek+tdeklt +a+++ 
  EHU02095.1 103 IGAAQKVEHYEIATYGTLHALASKLGYTKAAKLLAQTLAEEKQTDEKLTSVAQTIS 158
                 ***************************************************98765 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.39      14      40 ..      34      60 ..      26      64 .. 0.89
   2 ?    1.1   0.0       0.1   3.7e+02       2      28 ..      82     109 ..      82     124 .. 0.81
   3 ?   -1.7   0.0      0.78   2.8e+03       5      25 ..     132     155 ..     128     159 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
         RPT 14 ntdDdviitayqvkleddpsqkdklrr 40
                 ++D+ +i+a++  le++ +q++ l++
  EHU02095.1 34 AASDENLIAAFNQHLEETRGQIERLDE 60
                589**************99****9987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.1
         RPT   2 veeAyklLg.iden.tdDdviitayqvkl 28 
                 veeA ++++ +++  + D  +i+a+q k+
  EHU02095.1  82 VEEAQEIIEsVEKGeVRDQGLIGAAQ-KV 109
                 68999999966666799******999.55 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.78
         RPT   5 AyklLg...identdDdviitayq 25 
                 A klL    ++e+ +D+ + +++q
  EHU02095.1 132 AAKLLAqtlAEEKQTDEKLTSVAQ 155
                 555555432356667777766666 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.27   9.7e+02      34      49 ..      49      64 ..      44      66 .. 0.80
   2 ?   12.4   0.1   4.5e-05      0.16       4      27 ..     122     145 ..     121     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.27
                 HTT-.-HHHHHHHT-H CS
  FumaraseC_C 34 elgllteeeldelldp 49
                 e++    e+ldel+d+
   EHU02095.1 49 EETRGQIERLDELVDV 64
                 666667799*****98 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.5e-05
                  GGHHHHHHHHHHHHHHHHHHHT-- CS
  FumaraseC_C   4 aLnphIGYekAakIAkeAlkegkt 27 
                  aL+ ++GY kAak+  + l+e k+
   EHU02095.1 122 ALASKLGYTKAAKLLAQTLAEEKQ 145
                  89************9999998875 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.8e-05      0.35      13      73 ..      44     103 ..      19     107 .. 0.86
   2 ?    0.7   0.1      0.14   5.1e+02      37      55 ..     142     160 ..     128     165 .] 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.8e-05
       Sec20  13 isqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllv 73 
                  +q+l ++     e l+el+  t +++    + + +e++++ ++++++++e+ ++ d+ l+
  EHU02095.1  44 FNQHLEETRG-QIERLDELVDVTPEVKIKRMKCHALEGLVEEAQEIIESVEKGEVRDQGLI 103
                 4555555444.45689****************************************99776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
       Sec20  37 slekleeeykqvedvlsrs 55 
                 + ++++e++++v++++s +
  EHU02095.1 142 EEKQTDEKLTSVAQTISSA 160
                 3456777888887777765 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.6     0.089   3.2e+02      30      82 ..      23      72 ..      15      98 .. 0.41
   2 ?   12.6   0.5   3.9e-05      0.14      66     128 ..      83     145 ..      70     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.089
                  HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH..B.SSBBS-------TTGGHH CS
  Rubrerythrin 30 qiaelFeelAeeEreHakilnklleklepele.levkekvreyaeakpkfltta 82
                  qia+++ ++A++ ++ +++++ + + le+++  +e++    e + ++p++++++
    EHU02095.1 23 QIARALPKMARAASD-ENLIAAFNQHLEETRGqIERL---DELVDVTPEVKIKR 72
                  455555555554443.222222223333333322222...22233333333333 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.9e-05
                   SBBS-------TTGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH CS
  Rubrerythrin  66 ekvreyaeakpkflttaknLeeaiegayaeeeemyrfyeelaekegneeakklfkklaeaEkk 128
                   e++ e  e  +k +++++ L+ a++  ++ e+  y ++  la+k g+ +a+kl+++   +Ek+
    EHU02095.1  83 EEAQEIIESVEKGEVRDQGLIGAAQKVEHYEIATYGTLHALASKLGYTKAAKLLAQTLAEEKQ 145
                   6667777888888999999998888888889999***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1461.15
//
Query:       EHU02096.1  [L=168]
Description: uncharacterized DUF892 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-48  164.9   4.8    1.6e-48  164.7   4.8    1.0  1  DUF892        Domain of unknown function (DUF892)
       0.01   15.7   2.1       0.02   14.7   2.1    1.5  1  COQ7          Ubiquinone biosynthesis protein COQ7
  ------ inclusion threshold ------
      0.011   16.1   0.6      0.035   14.5   0.2    1.8  2  DUF2383       Domain of unknown function (DUF2383)
      0.015   15.6   1.3      0.025   14.9   1.3    1.3  1  HrpJ          HrpJ-like domain
      0.022   15.2   0.2      0.048   14.1   0.2    1.5  1  Rubrerythrin  Rubrerythrin
      0.029   14.3   4.5       0.13   12.2   2.1    2.1  2  Ferritin      Ferritin-like domain
       0.07   13.4   0.5       0.12   12.7   0.5    1.4  1  DUF4164       Domain of unknown function (DUF4164)


Domain annotation for each model (and alignments):
>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   4.8   6.4e-52   1.6e-48       3     158 ..       4     156 ..       2     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 6.4e-52
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS.HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------.-HHHHTTT-----------THHHHHHH... CS
      DUF892   3 eelfvdeLrDlyaaEkqllkalpkmakaaes.peLkaaleqHleeTegqierLeqvferlgesasekkcdamegliaegqelieeaaedeslkdaalia 100
                  e+++d+LrD++a+Ekq++++l+kma ++e+ p L+++l qHl+eT++q++ Leq+++r+g + s +k d+m +++a+gq++++++++de++k+a+   
  EHU02096.1   4 IENYHDWLRDAHAMEKQAESMLSKMAGRLEHyPALEQRLAQHLDETKHQLTLLEQLLDRHGIDHSIMK-DVMGKMAATGQAIGGMFTSDEVVKGAM--- 98 
                 699*****************************************************************.***************************... PP

                 HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      DUF892 101 aaqavehyEiAsYgtLialAeqlgekeaaklLeqtleeekatdekltelaeslvnqea 158
                 +++ +e+ EiAsY++Lia+Aeq+g+++a+++L+++ ++e a++e+l ++++++++q++
  EHU02096.1  99 SGYVFENAEIASYTSLIAAAEQVGDSDAVRVLTEIRDQEIAMAEWLFTHLPEVTQQFL 156
                 *******************************************************986 PP

>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.1   7.9e-06      0.02       5      90 ..      10      95 ..       7     147 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.9e-06
        COQ7  5 llRvdhaGElgAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeellkerrvrpslllplw.kvagfalGaltallGkeaam 90
                 lR  ha E  A+ + +  +  l +++p l++ l+++l++ k+ l ++e+ll+++++  s+++ +  k+a+++  ++    ++e++ 
  EHU02096.1 10 WLRDAHAMEKQAESMLSKMAGRL-EHYPALEQRLAQHLDETKHQLTLLEQLLDRHGIDHSIMKDVMgKMAATGQAIGGMFTSDEVVK 95
                58888999999999999988887.999************************************998345555555555555555544 PP

>> DUF2383  Domain of unknown function (DUF2383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   1.4e-05     0.035       9      86 ..      14      92 ..       7     101 .. 0.87
   2 ?   -0.3   0.0      0.54   1.4e+03      22      48 ..     116     142 ..     104     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
                HHHHHHHHHHHHHHHHHT--S.HHHHHHHHHHHHHHHHHHHHHHHHHHHCT---------------------------- CS
     DUF2383  9 Lietlkdgeegykeaaekvkd.pqlktlleriaeereeaaeeLqseiralggepedggslagklhrawvdlksaltsnd 86
                 ++ +k +e   +++a ++++ p+l++ l ++ +e +++ + L++ + ++g +     +++gk++ + +++ +++ts++
  EHU02096.1 14 AHAMEKQAESMLSKMAGRLEHyPALEQRLAQHLDETKHQLTLLEQLLDRHGIDHSIMKDVMGKMAATGQAIGGMFTSDE 92
                556667777777777777765499****************************************************996 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.54
                 HHHHT--SHHHHHHHHHHHHHHHHHHH CS
     DUF2383  22 eaaekvkdpqlktlleriaeereeaae 48 
                 +aae+v d++   +l++i ++  + ae
  EHU02096.1 116 AAAEQVGDSDAVRVLTEIRDQEIAMAE 142
                 588999999999998888887666655 PP

>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.3   9.9e-06     0.025      44      93 ..      17      64 ..       4      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.9e-06
                TT-HHHHHHHHS-TT..--HHHHHHHHHHH--SHHHHHHHHHHHHHHS-G CS
        HrpJ 44 aeeklkeLrkllksgqlsssaqllalleslfgDpsdqllaLrallrkgrp 93
                +e++++ + ++++ + l++ + l ++l+++  + ++ql +L +ll + + 
  EHU02096.1 17 MEKQAESMLSKMAGR-LEHYPALEQRLAQHLDETKHQLTLLEQLLDR-HG 64
                567999999999876.*****************************99.54 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.9e-05     0.048       2     126 ..      10     137 ..       9     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
                   HHHHHHHHHHHHHHHHHHHHHCHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.CSTTHH.B.SSBBS-------TTGGHHHHHHHHHHHHHH... CS
  Rubrerythrin   2 iLekAiagEssarrlYkelaekakegypqiaelFeelAeeEreHakilnkllek.lepelelevkekvreyaeakpkflttaknLeeaiegaya... 94 
                    L  A a+E +a+++   +a +++  yp +++ + +   +E +H+  l + l +    ++   + ++v +++ a+ + +      +e+++ga+    
    EHU02096.1  10 WLRDAHAMEKQAESMLSKMAGRLE-HYPALEQRLAQH-LDETKHQLTLLEQLLDrHGIDHS--IMKDVMGKMAATGQAIGGMFTSDEVVKGAMSgyv 102
                   6999********************.999999887776.57999997776666660444444..6666666666666666555555557777764222 PP

                   ...HHHCHHHHHHHHHHHTTSHHHHHHHHHHHHHH CS
  Rubrerythrin  95 ...eeeemyrfyeelaekegneeakklfkklaeaE 126
                      +e+ +y ++  +ae++g+++a +++ ++ ++E
    EHU02096.1 103 fenAEIASYTSLIAAAEQVGDSDAVRVLTEIRDQE 137
                   333788999**********************9999 PP

>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.2    0.0094        24      81     137 ..       7      61 ..       2      65 .. 0.87
   2 ?   12.2   2.1     5e-05      0.13      40     136 ..      44     148 ..      33     153 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0094
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  81 veevleaalehekkvteslrelielaeeegDpatadfledfleeqeehewelealle 137
                  ++ l++a ++ek++ ++l +++   e    pa+++ l + l+e  +++  le+ll+
  EHU02096.1   7 YHDWLRDAHAMEKQAESMLSKMAGRLEHY--PALEQRLAQHLDETKHQLTLLEQLLD 61 
                 56779999999999999999999999975..99999999999999999999999887 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHHHHHHHHHTTS....SHHHHHH....C-SSSS.....CSSHHHHHHHHHHH...HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
    Ferritin  40 qaeeerehadklaerilalGgtpvltraelee....ieapke.....fgsveevleaaleh...ekkvteslrelielaeeegDpatadfledfleeqe 126
                 q  +e++h   l+e +l++ g   ++++  ++     +a  +     f +++ev++ a+     e++ ++s+  li+ ae++gD   +  l+++ +++ 
  EHU02096.1  44 QHLDETKHQLTLLEQLLDRHG---IDHSIMKDvmgkMAATGQaiggmF-TSDEVVKGAMSGyvfENAEIASYTSLIAAAEQVGDSDAVRVLTEIRDQEI 138
                 566888999999999999999...555544444456333333456634.88888888776422288999****************************** PP

                 HHHHHHHHHH CS
    Ferritin 127 eheweleall 136
                   +++l ++l
  EHU02096.1 139 AMAEWLFTHL 148
                 9999998877 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   4.7e-05      0.12      18      68 ..       9      59 ..       1      65 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
     DUF4164 18 dsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleev 68
                d L +a  +  +ae + ++++ ++e   + ++RLa+ Ld+++  ++ le++
  EHU02096.1  9 DWLRDAHAMEKQAESMLSKMAGRLEHYPALEQRLAQHLDETKHQLTLLEQL 59
                56666666777778888999**********************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1176  (0.0655921); expected 358.6 (0.02)
Passed bias filter:                      803  (0.0447878); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1417.37
//
Query:       EHU02097.1  [L=519]
Description: cytoplasmic trehalase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-154  515.0   0.2   3.3e-154  514.5   0.2    1.2  1  Trehalase  Trehalase
  ------ inclusion threshold ------
      0.015   15.0   0.3      0.075   12.8   0.0    2.2  2  DUF346     Repeat of unknown function (DUF346)


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.5   0.2  3.7e-158  3.3e-154       2     512 .]      38     514 ..      37     514 .. 0.95

  Alignments for each domain:
  == domain 1  score: 514.5 bits;  conditional E-value: 3.7e-158
                 CTTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHTT CS
   Trehalase   2 lfgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrkik 100
                  f+d+ktf D+ ++ ++ ++l ++++++++      +++dl++fv d+f  +g           +e+   f     d++l+   e++++lw+ l++   
  EHU02097.1  38 IFEDSKTFPDCSPKYDPLDVLMRYRRQKRS------KDFDLARFVADHFYMPG----------INES---FYVSNPDKTLN---EHIDDLWPVLTK--- 111
                 599**********************99988......69************972..........2222...22234668888...************... PP

                 TS-SCE-TTECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHHCHCCH CS
   Trehalase 101 kkvgllpeassllplpkpfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyektedda 199
                   ++++  +ssllplpkp+vVPGgRF E+YyWDsYf++lGL+es++ dl + m++nf++li++YG+i+NgnR+YYlsRSQ P+++ mv+++ e+  + +
  EHU02097.1 112 -MPQQHMPHSSLLPLPKPYVVPGGRFGETYYWDSYFTMLGLAESGRDDLLRHMADNFAWLIDNYGHIPNGNRTYYLSRSQTPVFALMVELFEED--GVQ 207
                 .9***************************************************************************************99999..999 PP

                 HHHHHHHHHHHHHHCCTT.......TCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTTHCCHHHHHCCCCHHHHHCCHHCHHHHCCCCTT CS
   Trehalase 200 llravlaalkkeyefwma.......eqrldevtklskryllnrygvpeetprpesyledketaeklkkerkkeevyrelkaaaesgwdlssRwlresgh 291
                   +++l++l key+fwm+       +q+ ++v+++ +++llnry+++++tpr+es++ed eta + k  r++ evyr+l+a+a+sgwd+ssRwlr+ ++
  EHU02097.1 208 GSQRYLDQLMKEYQFWMDgagslmpNQAYRHVVRMPNGSLLNRYWDDRDTPRDESWIEDIETARHSK--RPASEVYRDLRAGAASGWDYSSRWLRN-PK 303
                 9***************************************************************999..***************************.55 PP

                 -S.TCCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----BGGGGHHHHCT-S-HHH CS
   Trehalase 292 dtgellelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyesatnlvpLwaglaskeq 390
                    +l+++rt++++p+DLNa+lykle  ia+++++ g++ t+  +++ka++rk+ai+++LW+  agv+ DYd++ + +  +++a+++vpL++gla++ q
  EHU02097.1 304 ---RLSSIRTTQFIPIDLNAFLYKLELMIATLSHVKGEELTALAWQNKADARKRAITRYLWDSTAGVFRDYDWR-RARFGAFTAAAVVPLFVGLATPYQ 398
                 ...5*********************************************************************9.78999******************* PP

                 HHHHHHHCHHHHCCCCCEESCCCC-SBSSS-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTSTSTTBTT-S CS
   Trehalase 391 aaklvakvlekleesgllvaegglgtsllksgrQWDyPngWaPlqilaveglerygeeelaerlaerwlktvtkafsdegklvEKYdvtreaeygGggg 489
                         l+ +   +ll ++ggl ts ++sg+QWD+PngWaP+q++av gl++ygee+la+++a +wl+tv+++++ ++klvEKYd++ +    Gggg
  EHU02097.1 399 ------AHLQAIALRHLLLSNGGLLTSMVESGEQWDKPNGWAPMQWMAVVGLNNYGEETLASEIAVNWLTTVNNFYQLHHKLVEKYDISGDRARPGGGG 491
                 ......56677777777777*********************************************************************8888889*** PP

                 SSSTTCSBHHHHHHHHHHHCCH. CS
   Trehalase 490 eyvlqeGFGWvNgvvlelLellg 512
                 ey+lq+GFGW+Ngv+ +l+ ++g
  EHU02097.1 492 EYPLQDGFGWTNGVTRRLMAMYG 514
                 ******************99886 PP

>> DUF346  Repeat of unknown function (DUF346)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.4e-06     0.075       6      29 ..     240     263 ..     238     269 .. 0.94
   2 ?   -1.9   0.1      0.33   2.9e+03      18      29 ..     361     373 ..     359     384 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.4e-06
      DUF346   6 ArgtdGtLyHwWWdpgdglkradW 29 
                  r+++G+L  ++Wd++d+++ ++W
  EHU02097.1 240 VRMPNGSLLNRYWDDRDTPRDESW 263
                 599********************* PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.33
      DUF346  18 Wdpgdg.lkradW 29 
                 Wd++ g  +  dW
  EHU02097.1 361 WDSTAGvFRDYDW 373
                 9999998888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3872.81
//
Query:       EHU02098.1  [L=168]
Description: GCN5 family N-acetyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-15   56.8   0.0    2.8e-15   56.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.9e-12   47.2   0.0    2.4e-12   46.9   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.2e-09   37.1   0.0    4.5e-09   36.6   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.9e-07   30.2   0.0    5.1e-07   29.8   0.0    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.9e-05   24.0   0.0    4.9e-05   23.2   0.0    1.3  1  FR47             FR47-like protein
    6.7e-05   23.6   0.0    8.2e-05   23.3   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0012   19.0   0.0     0.0014   18.8   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0015   18.0   0.0     0.0045   16.5   0.0    1.7  1  Acetyltransf_15  Putative acetyl-transferase
     0.0019   18.3   0.0     0.0046   17.0   0.0    1.6  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.4e-18   2.8e-15      16     117 .]      38     138 ..      17     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1.4e-18
                     HHHHHHHHHHHHHHSTTCEEEEEEET..TEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHH CS
  Acetyltransf_1  16 nedaseeefeesfsleaegllvaeed..geliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveednda 107
                     +e+++ ++f+  +  ++++ l a +d  ge++G  +l+  p    ++va i++++V pe+rg+Gl+++Ll +++ +are     i +av+++n a
      EHU02098.1  38 RERSEPDAFFAALL-QNNTVL-AGFDpqGEIVGVTGLRFHPGqKQRHVATIWGMYVLPEWRGSGLAKTLLMTAIAQAREC--ISIRFAVSATNAA 128
                     33444444444433.333233.3333569*************98899***************************999999..456779******* PP

                     HHHHHHH.TTE CS
  Acetyltransf_1 108 airlYek.lGF 117
                     a +lY +  GF
      EHU02098.1 129 ATALY-RsAGF 138
                     *****.65**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.2e-15   2.4e-12      14     110 ..      38     142 ..      19     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.2e-15
  Acetyltransf_10  14 kefispealrerieegealllvaeeggkivGvielrdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yav 98 
                      +e  +p+a+ + + +++++l +++ +g+ivGv +lr +          i  ++V pe+rg G++k Ll++++++a+++ i++++ v a++ +a 
       EHU02098.1  38 RERSEPDAFFAALLQNNTVLAGFDPQGEIVGVTGLRFHPgqkqrhvaTIWGMYVLPEWRGSGLAKTLLMTAIAQAREC-ISIRFAVSATNaAAT 130
                      55566677777777999****************8866555788967777778***********************877.777********9*** PP

  Acetyltransf_10  99 pfYeklGFkavg 110
                      ++Y++ GF++ g
       EHU02098.1 131 ALYRSAGFTTYG 142
                      ********9986 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.3e-12   4.5e-09      11      75 ..      59     139 ..      42     140 .. 0.69

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.3e-12
                     T....TEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHH.HTT...SEEE.EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  11 d....gkivGfialslld.......aeitrlaVdpeyrgkGiGraLle.aae...kgii.le.qlelnaekaikfYeklGFe 75 
                     +    g+ivG  +l  +        a i++++V+pe+rg G+++ Ll  a +   + +i +   +  ++ +a ++Y++ GF+
      EHU02098.1  59 GfdpqGEIVGVTGLRFHPgqkqrhvATIWGMYVLPEWRGSGLAKTLLMtA-IaqaRECIsIRfAVSATNAAATALYRSAGFT 139
                     044668899988888877888887677777****************9734.23445576423433333326777*******7 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.6e-10   5.1e-07      13     126 ..      17     139 ..       5     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.6e-10
                     HHHHHHHHTT----H..........HHHHHHHHHHTTSEEEEEEE.TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHH CS
  Acetyltransf_9  13 vlellkyaFqdeespl.......e.eireyfrklleesrvlgaed.ngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlara 98 
                     + ++     q++++++       + e +++f  ll+++ vl  +d +ge+vg+ +   l+++ + k+ ++a + g  v pe rg g+++ Ll +a
      EHU02098.1  17 YRAIRLDGLQRHPEAFgadyareRsEPDAFFAALLQNNTVLAGFDpQGEIVGVTG---LRFHPGQKQRHVATIWGMYVLPEWRGSGLAKTLLMTA 108
                     555555555555555555555545677899*********************9876...5777777****************************** PP

                     HHHHHHT.T--EEEE--..SSHHHHHTTT-E CS
  Acetyltransf_9  99 leemree.gqplsllfP..ssipiYrrfGye 126
                     ++++re   +++++     ++ ++Yr+ G+ 
      EHU02098.1 109 IAQARECiSIRFAVSATnaAATALYRSAGFT 139
                     *****855555554444667789****9997 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.4e-08   4.9e-05      19      80 ..      81     141 ..      77     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.4e-08
                 -TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  19 kdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 + +  + +++vlpe r+ Gl++ l    +++ a++ + +   v a+N ++ +ly + Gf+ +
  EHU02098.1  81 RHVATIWGMYVLPEWRGSGLAKTLLMTAIAQ-ARECISIRFAVSATNAAATALYRSAGFTTY 141
                 5678899**************9875433333.345566777899***************987 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.1e-08   8.2e-05       3     138 .]       5     139 ..       3     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.1e-08
  Acetyltransf_3   3 lLrplteeDlealfelrsdpevmry...lpe..pltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedee...aelgymlap 89 
                     +Lr+lt++D  ++ ++r d  ++r+   ++    ++++e +++++  ++     ++  +a ++++++++G+ glr  +++ ++      g+++ p
      EHU02098.1   5 TLRRLTSSDSVGYRAIRLDG-LQRHpeaFGAdyARERSEPDAFFAALLQ-----NNTVLAGFDPQGEIVGVTGLRFHPGQKQRhvaTIWGMYVLP 93 
                     89*******99997777765.4554332222345566666777774444.....34456666666657*******666665559988889999** PP

  Acetyltransf_3  90 sfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +++g G+a+  +  ++  a e      ++  ++++N a  ++++++Gf+
      EHU02098.1  94 EWRGSGLAKTLLMTAIAQARECI---SIRFAVSATNAAATALYRSAGFT 139
                     ***********999999996666...799*******************6 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.2e-07    0.0014       1     152 [.       6     156 ..       6     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.2e-07
  Acetyltransf_4   1 iraateeDakeilaiy..aeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylgqfkkr..akdwkaelsvylaerdnn 90 
                     +r +t +D   ++ai+    +++ +a++ +y+     e + f +al  +++ v+  ++ +++ivG   l+ f++    +  + ++ +y+     +
      EHU02098.1   6 LRRLTSSDSVGYRAIRldGLQRHPEAFGADYAR-ERSEPDAFFAAL-LQNNTVLAGFDpQGEIVGVTGLR-FHPGqkQRHVATIWGMYVL-PEWR 96 
                     68899999999999995444578889**99955.455667888887.455666666666***********.5554225555678999998.5688 PP

  Acetyltransf_4  91 keglgrelidale.qvlkeqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                       gl++ l+   +  ++++    ++  ++ ++n+++ +++ + GF+  g    + ++ g   D
      EHU02098.1  97 GSGLAKTLL---MtAIAQARECISIRFAVSATNAAATALYRSAGFTTYGTDVAALYVDGVFHD 156
                     888886643...32344666777777888889***************9998888888877666 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.3e-06    0.0045      69     101 ..      80     112 ..      73     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.3e-06
  Acetyltransf_15  69 eknvleiYtlyvsekyrgkGlakklLeeslkel 101
                      +++v  i+ +yv +++rg Glak lL+ ++ + 
       EHU02098.1  80 QRHVATIWGMYVLPEWRGSGLAKTLLMTAIAQA 112
                      667889**********************98765 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0046      19      55 ..      78     114 ..      57     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
  Acetyltransf_CG  19 vrkegvldfthTeVpeelrGkGiAkkLvkaalddare 55 
                      +++ +v +++  +V +e rG G+Ak L  +a+ +are
       EHU02098.1  78 QKQRHVATIWGMYVLPEWRGSGLAKTLLMTAIAQARE 114
                      5778899****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1273.63
//
Query:       EHU02099.1  [L=242]
Description: ArsR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-10   39.3   0.7    1.5e-09   37.8   0.2    2.1  2  HTH_20          Helix-turn-helix domain
    1.6e-06   27.9   0.0    2.9e-06   27.1   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0004   20.1   0.1      0.001   18.8   0.1    1.7  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.047   13.6   0.0    1.8  1  MarR_2          MarR family
      0.023   14.2   0.0      0.045   13.3   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.062   13.5   0.0       0.12   12.6   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.073   13.0   0.0       0.18   11.7   0.0    1.6  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.2   5.8e-13   1.5e-09       2      61 .]      28      87 ..      27      87 .. 0.96
   2 ?   -1.9   0.0       1.4   3.7e+03      36      45 ..     125     134 ..     118     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.8e-13
                HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                ++a ALa+ +R+ il aL+++++ ta+el    d++++t s HL++L e gL++ v +gr
  EHU02099.1 28 TVATALADTSRMHILCALMDGRAWTATELSVVADVAPSTTSGHLNKLTETGLLTCVVQGR 87
                7899**************************************************998886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
                 S-HHHHHHHH CS
      HTH_20  36 lskntlsyHL 45 
                  +  t+++HL
  EHU02099.1 125 RRARTCYDHL 134
                 5678999998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-09   2.9e-06       3      45 ..      37      80 ..      35      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-09
                HHHHHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  3 tRlkILklLaege.lcvcelaeelglsqstvShHLkkLreaGLV 45
                 R  IL++L++g   +++el+   ++ +st+S HL+kL e GL+
  EHU02099.1 37 SRMHILCALMDGRaWTATELSVVADVAPSTTSGHLNKLTETGLL 80
                7999*******5559***************************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.1e-07     0.001       7      49 ..      40      81 ..      39      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.1e-07
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                +iL al  ++  +t +el+  +++++St++++L+ L+e G+++
  EHU02099.1 40 HILCALMDGRA-WTATELSVVADVAPSTTSGHLNKLTETGLLT 81
                57777777777.9****************************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05     0.047      10      52 ..      41      81 ..      32      89 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                +L aL ++     t++el    ++ +s++s +l++L + GL++
  EHU02099.1 41 ILCALMDGRA--WTATELSVVADVAPSTTSGHLNKLTETGLLT 81
                5566655543..6****************************85 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05     0.045       3      47 ..      36      80 ..      35      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
      HTH_24  3 etdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                  +  IL++L++    + +eL+   ++ pst++ +l++L+e Gl+
  EHU02099.1 36 TSRMHILCALMDGRAWTATELSVVADVAPSTTSGHLNKLTETGLL 80
                6678899999998889***************************97 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.7e-05      0.12      24      53 ..      52      81 ..      41      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.7e-05
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyve 53
                    + ++l+ + +v+ps+ s  l+kL + G++ 
      EHU02099.1 52 TATELSVVADVAPSTTSGHLNKLTETGLLT 81
                    568999999******************986 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.2e-05      0.18       5      47 ..      38      80 ..      36      81 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.2e-05
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                +++iL+ l +  + + +eL     v +st++  l +L + Gl+
  EHU02099.1 38 RMHILCALMDGRAWTATELSVVADVAPSTTSGHLNKLTETGLL 80
                689999999999*****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1949.57
//
Query:       EHU02100.1  [L=127]
Description: hypothetical protein CKS_0611 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-07   30.0   0.1       0.02   14.7   0.0    2.6  2  ACT       ACT domain
  ------ inclusion threshold ------
      0.037   13.8   0.0       0.24   11.2   0.0    2.0  2  ACT_7     ACT domain
       0.15   12.6   0.0        3.2    8.4   0.0    2.3  2  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.1e-05     0.066       8      38 ..       9      39 ..       4      60 .. 0.75
   2 !   14.7   0.0   3.3e-06      0.02      10      30 ..      79      99 ..      75     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                ESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT  8 pDrPGlLarvfgaladrgiNidsieqrssed 38
                +++PG La+++++l+++gi ++   ++s++ 
  EHU02100.1  9 RNEPGSLAAFGTLLGQHGIGLEGGGVFSTGK 39
                699***************9777666666666 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.3e-06
                STTHHHHHHHHHHHTTSEEEE CS
         ACT 10 rPGlLarvfgaladrgiNids 30
                rPG L+++++ la++giNi+ 
  EHU02100.1 79 RPGELGEIAQCLAQNGINIRA 99
                9******************85 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.13   7.8e+02      20      37 ..      11      28 ..       4      30 .. 0.85
   2 ?   11.2   0.0     4e-05      0.24      17      55 ..      76     115 ..      66     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.13
                S--HHHHHHHHHHTTT-- CS
       ACT_7 20 vtGivaklaspLaeagIs 37
                 +G +a+  + L ++gI 
  EHU02100.1 11 EPGSLAAFGTLLGQHGIG 28
                799999999*******96 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4e-05
                 --SS--HHHHHHHHHHTTT---EEEE-SS-EE.EEEEGGG CS
       ACT_7  17 pfdvtGivaklaspLaeagIsifqiStyrtdy.iLVpeed 55 
                 p + +G + ++a++La++gI+i +  + ++ + +L+ ++d
  EHU02100.1  76 PQQRPGELGEIAQCLAQNGINIRAQYSDHSNWlVLITDDD 115
                 5567888999************877766666625666555 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.053   3.2e+02       8      35 ..       3      30 ..       1      48 [. 0.82
   2 ?    8.4   0.0   0.00053       3.2      15      41 ..      78     104 ..      76     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.053
       ACT_4  8 rleveaedrkglLaditqviseekaniv 35
                +l v+ ++++g La   +++ ++++ ++
  EHU02100.1  3 NLYVVFRNEPGSLAAFGTLLGQHGIGLE 30
                68999*********99999999888765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00053
       ACT_4  15 drkglLaditqviseekanivsvnakt 41 
                  r+g L++i+q ++++++ni++  +++
  EHU02100.1  78 QRPGELGEIAQCLAQNGINIRAQYSDH 104
                 58999***************9866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1160.86
//
Query:       EHU02101.1  [L=107]
Description: monooxygenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-14   51.7   0.4    9.5e-14   51.3   0.4    1.2  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.4   5.3e-18   9.5e-14       1      77 [.       1      76 [.       1      77 [. 0.96

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 5.3e-18
                CEEEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHHH CS
         ABM  1 mviviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaahe 77
                m+ v  e ++ p +++ ++++ ae+ ++l  + pG++ +e ++s  +p++++++++We+e a+++++++  ++ a++
  EHU02101.1  1 MIAVLFEAEALPAAQQRYIELAAELRPEL-DRIPGFIAIERFQSLSEPGKILSLSWWEDERAVRHWRENSLHQSAQR 76
                99*************************66.****************************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 979.95
//
Query:       EHU02102.1  [L=285]
Description: hypothetical protein CKS_0613 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-22   78.9   5.8    7.1e-22   78.2   5.8    1.4  1  NAD_binding_10  NAD(P)H-binding
    9.1e-20   71.2   0.5    1.3e-19   70.7   0.5    1.2  1  NmrA            NmrA-like family
      3e-05   23.1   0.0    6.9e-05   22.0   0.0    1.5  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    0.00052   19.5   0.3     0.0012   18.4   0.3    1.8  1  Epimerase       NAD dependent epimerase/dehydratase family
      0.001   18.3   3.4       0.25   10.4   0.1    2.4  2  RmlD_sub_bind   RmlD substrate binding domain
     0.0023   17.2   0.1     0.0034   16.6   0.1    1.3  1  NAD_binding_4   Male sterility protein
     0.0039   17.1   0.2     0.0039   17.1   0.2    2.3  3  KR              KR domain
     0.0083   16.2   0.1      0.014   15.5   0.1    1.4  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.022   15.0   0.2      0.054   13.8   0.2    1.8  1  TrkA_N          TrkA-N domain
      0.033   14.2   0.2      0.059   13.4   0.2    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   5.8   3.9e-25   7.1e-22       1     181 [.       6     182 ..       6     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 3.9e-25
                     TTTSHHHHHHHHHHHHC-.T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEE.EES---TCCHHHHHHHHHHHHHHCT--EE CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaV.vsalggggkdeegaknivdaakeagvkRf 93 
                     GAtG+ Grl+++ ll++    +++a vR+p+k+++++ + g++v e+d + +e+l++al+g+d   +++++  g++e ++++++daak+agvk +
      EHU02102.1   6 GATGQLGRLVIDALLKKVaADTLVAAVRTPAKASDIA-ARGVHVREADYNRPETLTAALQGVDKLlLISGSEVGQREAQHRAVIDAAKAAGVKFI 99 
                     9****************988899************97.79***********************7615555555668888*************999 PP

                     EEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEEETTSS---.......-EEEHHHHHHHHHHHC CS
  NAD_binding_10  94 vlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdepttkyrvvekgepfkg.......gsisradVAdvlvavl 181
                      + s +++++   ++++           a++ra e+ll asg+ +  +r g+ t++ t  +  +  +  f g       +s +r+d Ad++++v+
      EHU02102.1 100 AYTSLLHADK---SPLS---------LGAEHRATEALLAASGVPYALLRNGWYTENYTASIAPALAHHAFLGaaeqgriASAARRDYADAAAEVM 182
                     9999999995...2332.........2368*************************9877666664444443311111226889999999999886 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.5     7e-23   1.3e-19       1     232 [.       2     220 ..       2     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 7e-23
                 EEESSTTSHHHHHHHHHHHH..HT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.S-HHHHHHHHHHHHHHHS-SE CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.skeiedgkklvdAakeaGvkh 96 
                 I+v+GaTG++G+ v++allk  a  +  a vR +   +a  ++++Gv + ++d +  e l +al+gvd   +  g+  ++  ++  +++dAak+aGvk 
  EHU02102.1   2 IAVTGATGQLGRLVIDALLKkvAADTLVAAVRTPA--KASDIAARGVHVREADYNRPETLTAALQGVDKLLLISGSEvGQREAQHRAVIDAAKAAGVKF 98 
                 89******************876667778899885..6899***************************999999988899999**************** PP

                 EEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHH CS
        NmrA  97 fiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilk 195
                 + y sl  ++ +s      +++ ++    e  + a+g+py  ++ g ++en+++++a+    ++a  +   +l + ++  ++   a +D++ + ++++ 
  EHU02102.1  99 IAYTSLLHAD-KS-----PLSLGAEHRATEALLAASGVPYALLRNGWYTENYTASIAP----ALAHHA---FLGAAEQGRIASA-ARRDYADAAAEVMV 183
                 ******9999.55.....4677788888999***************************....555554...5555555445555.9***********99 PP

                 HHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 196 dprklkgkriklagntlsgneivelfekkigktvkYt 232
                 +  ++  ++     + +++ e ++ +  + g++v Y+
  EHU02102.1 184 RDGQAGKVYELAGDDSYTLAEFAAEIAAQSGEKVDYV 220
                 8887766666666789********************7 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.8e-08   6.9e-05       1     117 [.       3     105 ..       3     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.8e-08
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +vtG++G lGr ++ +L++     +  v+ +r+  +  +++   +v+ v e+D +  ++l++al+gvd ++ + s ++v ++  +           r v
  EHU02102.1   3 AVTGATGQLGRLVIDALLKKVA-ADTLVAAVRTPAKA-SDIAARGVH-VREADYNRPETLTAALQGVDKLLLI-SGSEVGQREAQH----------RAV 87 
                 69****************9995.77778888887777.666677777.89*********************99.666776644444..........899 PP

   3Beta_HSD 100 leacvkagvrvlvYtSsa 117
                 ++a++ agv+++ YtS +
  EHU02102.1  88 IDAAKAAGVKFIAYTSLL 105
                 ***************965 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   6.6e-07    0.0012       1      73 [.       2      74 ..       2     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.6e-07
                EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE--S CS
   Epimerase  1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihlAa 73
                i VtGatG++G+ +++all+k   + ++ + ++ a+++   ++  ++ e+d+  ++ l+++++  ++d  +++ +
  EHU02102.1  2 IAVTGATGQLGRLVIDALLKKVaADTLVAAVRTPAKASDIAARGvHVREADYNRPETLTAALQ--GVDKLLLISG 74
                78*******************976655555554555444443335**************9999..7887777744 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.7   0.00063       1.1       3      52 ..       2      68 ..       1     107 [. 0.68
   2 !   10.4   0.1   0.00014      0.25     126     238 ..     115     220 ..     105     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00063
                   EEEESTTSHHHHHHHHHCTT...TSEEEEEE-TT...............T--TTSHHHHHHHHHHH-- CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlae...eglevlaltre...............eldltdaeavaellkeakp 52
                   i vtGa+GqlG+ ++++l +   +++ v a+ r+               e+d +++e+++++l+ +++
     EHU02102.1  2 IAVTGATGQLGRLVIDALLKkvaADTLVAAV-RTpakasdiaargvhvrEADYNRPETLTAALQGVDK 68
                   88*********98887766522123333343.445788888888888888888888888888855444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
                    HHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHHHH-SEEEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHH CS
  RmlD_sub_bind 126 GrtKlaGEqavlaagkkalivRtswvygekgknfvktmlrlakereelkvvaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswl 221
                    G+   a E   +a+g  ++++R +w    + +n+ + +   ++++  l   +    +  + rd A++ ++++ +  +   + +vy la++++ + +
     EHU02102.1 115 GAEHRATEALLAASGVPYALLRNGW----YTENYTASIAPALAHHAFLGAAEQGRIASAARRDYADAAAEVMVRDGQ---AGKVYELAGDDSYTLA 203
                    5555666777777777777777777....456777777777777777777776666667778888888888877765...899************* PP

                    HHHHHHHHHHCHTTSEE CS
  RmlD_sub_bind 222 efArailkeagadseev 238
                    efA +i++++g++   v
     EHU02102.1 204 EFAAEIAAQSGEKVDYV 220
                    *********99977444 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.9e-06    0.0034       1      35 [.       4      38 ..       4      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.9e-06
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksge 35
                   +TGaTG LG+ ++  LL++ ++ ++++ vR+  ++
     EHU02102.1  4 VTGATGQLGRLVIDALLKKVAADTLVAAVRTPAKA 38
                   7******************9977*******54443 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.2e-06    0.0039       4      74 ..       3      65 ..       1      74 [. 0.72
   2 ?   -0.1   0.0      0.43   7.6e+02      23      55 ..      64      98 ..      57     104 .. 0.75
   3 ?   -1.8   0.1       1.4   2.5e+03     143     169 ..     160     188 ..     155     228 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
                EEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHH CS
          KR  4 litGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdaveallee 74
                 +tG++G+LG+ +++ l++k  a +lv   R++a       + + ++a+g+  +v++aD   ++ ++a+l+ 
  EHU02102.1  3 AVTGATGQLGRLVIDALLKKVaADTLVAAVRTPA-------KASDIAARGV--HVREADYNRPETLTAALQG 65
                59****************9986888999999933.......2234555554..4456666666666666665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.43
                HHS-EEEEE-SS....--HHHHHHHHHHHHTT-EE CS
          KR 23 kgarhlvllsRsa..aadedskaliaelealgaev 55
                +g  +l+l+s s+  + +++++a i++ +a g++ 
  EHU02102.1 64 QGVDKLLLISGSEvgQREAQHRAVIDAAKAAGVKF 98
                78889999998864466777778899888888865 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.4
                 -TT-HHHHHHH..HHHHHHHHHHHHHHHT CS
          KR 143 sagqanYaaaN..aflDalaeyrrsqglp 169
                 +a+q+  a+a    + Da ae   + g++
  EHU02102.1 160 AAEQGRIASAArrDYADAAAEVMVRDGQA 188
                 55555544443114666666666555554 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.7e-06     0.014       3      56 ..       2      54 ..       1     106 [. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.7e-06
                EEEETTTSHHHHHHHHHHHHSTTE.EEEEEEETTCSTTTTTBHH.HHSSSS--S-B CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedl.elvaavdrkeselegkdag.ellglgklgva 56
                +av+Ga+G +G+ v++a+ ++  + +lvaav ++    +++d+  + +++++ +++
  EHU02102.1  2 IAVTGATGQLGRLVIDALLKKVAAdTLVAAVRTPA---KASDIAaRGVHVREADYN 54
                89***************999766515677766665...333433133444444444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2     3e-05     0.054       3      58 ..       4      62 ..       2     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-05
                EES.-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT CS
      TrkA_N  3 iiG.lGrvGrslaeeLsegg..kdvvvidkdeerveelreeglevvvgdatdeevLeea 58
                + G  G++Gr +++ L ++   +  v+  + ++++  ++++g++v  +d+ ++e+L +a
  EHU02102.1  4 VTGaTGQLGRLVIDALLKKVaaDTLVAAVRTPAKASDIAARGVHVREADYNRPETLTAA 62
                555469************6667668888899*************************988 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.3e-05     0.059      17      80 ..       4      70 ..       1      93 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
                  EES-.SHHHHHHHHHHHCCT-CEEEE.EESSHHHHHHHHHHH.T.ET-EEEEGCGHHHHHHT-SEEE CS
  Shikimate_DH 17 liGa.GemaelvakhLlakgvkkvvv.aNRtlerakelaeel.kgeeiealkleelkellaeadvvi 80
                  + Ga G++++lv+ +Ll+k + + +v a Rt ++a+++a +  +  e+ + + e l+++l+ +d ++
    EHU02102.1  4 VTGAtGQLGRLVIDALLKKVAADTLVaAVRTPAKASDIAARGvHVREADYNRPETLTAALQGVDKLL 70
                  566559*************6666555167*********98864777889999999999998888554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2275.53
//
Query:       EHU02103.1  [L=127]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-27   93.7   0.1    5.8e-27   93.4   0.1    1.1  1  HxlR      HxlR-like helix-turn-helix
     0.0001   22.4   0.0    0.00014   21.9   0.0    1.2  1  HTH_34    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.026   14.4   0.0    1.5  1  HTH_5     Bacterial regulatory protein, arsR family
      0.013   15.4   0.0      0.023   14.6   0.0    1.4  1  HTH_12    Ribonuclease R winged-helix domain
      0.048   13.6   0.0      0.084   12.8   0.0    1.3  1  MarR_2    MarR family
       0.11   12.6   0.2       0.23   11.5   0.1    1.6  2  HTH_20    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.1   1.9e-30   5.8e-27       2      89 ..      28     115 ..      27     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 1.9e-30
                 HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHHC CS
        HxlR   2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeylee 89 
                 i+++W++lil +l + + Rfsel+ra++++s++mL+q+Lr +e+dg++er +y+ vPp+veY+lt+ G ++ + +  l++w e+++e+
  EHU02103.1  28 ITSRWSVLILLALKNDTLRFSELRRAVGGVSERMLSQSLRYMEEDGFVERIAYDVVPPHVEYRLTPLGLEVGEQVVGLADWLEMNVER 115
                 799********************************************************************************99886 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.8e-08   0.00014       2      70 ..      31     100 ..      30     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.8e-08
      HTH_34   2 RlavlsyLas.vdeadfvelkeale.atdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafk 70 
                 R +vl +La  +d   f+el+ a++ +++  Ls  l+ +e+ g++e+ ++++   p+  +r+Tp G+e  +
  EHU02103.1  31 RWSVLILLALkNDTLRFSELRRAVGgVSERMLSQSLRYMEEDGFVER-IAYDVVPPHVEYRLTPLGLEVGE 100
                 67899999988***********995499999***************7.5566666***********98655 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   8.5e-06     0.026       5      46 ..      34      76 ..      34      77 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.5e-06
                HHHHHHHTTSSEEHHHHHHHH.TS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  5 lkILklLaegelcvcelaeel.glsqstvShHLkkLreaGLVe 46
                + IL +L +  l ++el +++ g+s+  +S+ L+ ++e G+Ve
  EHU02103.1 34 VLILLALKNDTLRFSELRRAVgGVSERMLSQSLRYMEEDGFVE 76
                57*******************55*******************7 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.8e-06     0.023      30      54 ..      57      81 ..      48      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.8e-06
      HTH_12 30 igeravRyrLrkleergltrrvgya 54
                ++er +   Lr +ee+g+++r  y 
  EHU02103.1 57 VSERMLSQSLRYMEEDGFVERIAYD 81
                689999999*************997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05     0.084       8      54 ..      32      78 ..      29      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
                HHHHHHHHCTTTSEEEHHHHHH.HHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelar.rlglsksavsrilkrLvaaGLverr 54
                + vL  L+   +  l+ +el r   g+s   +s+ l+ +++ G+ver 
  EHU02103.1 32 WSVLILLALKNDT-LRFSELRRaVGGVSERMLSQSLRYMEEDGFVERI 78
                6677777766664.9*******8899********************95 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.7e-05      0.23      15      56 ..      36      77 ..      22      79 .. 0.91
   2 ?   -2.5   0.0       1.8   5.5e+03      13      26 ..     111     124 ..     105     126 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-05
                HHHHHSTCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 15 ilraLaraegltaselaerl.dlskntlsyHLrvLeeagLvev 56
                il aL  ++ l +sel +++ ++s   ls+ Lr +ee g+ve+
  EHU02103.1 36 ILLAL-KNDTLRFSELRRAVgGVSERMLSQSLRYMEEDGFVER 77
                77888.999999********77*******************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
                 HHHHHHHSTCTTB- CS
      HTH_20  13 rrilraLaraeglt 26 
                 + ++r La +e ++
  EHU02103.1 111 MNVERILAHREKQS 124
                 66788887776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1009.62
//
Query:       EHU02104.1  [L=27]
Description: hypothetical protein CKS_0615 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (27 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       121  (0.00674884); expected 358.6 (0.02)
Passed bias filter:                      109  (0.00607954); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 230.96
//
Query:       EHU02105.1  [L=334]
Description: putative cytochrome bd2, subunit II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-99  332.4  29.6    3.1e-99  332.2  29.6    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
  ------ inclusion threshold ------
      0.097   11.7   2.1       0.15   11.0   2.1    1.3  1  PalH             PalH/RIM21


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.2  29.6  3.4e-103   3.1e-99       2     303 .]       5     323 ..       4     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: 332.2 bits;  conditional E-value: 3.4e-103
  Cyt_bd_oxida_II   2 qliwflligvllagYvvldGfDlGvGillpllakkde.errlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      ++iwf++i++++++Y+v++GfDlG+G+l+p+  +kd+ er++++n+++pvWdgne+WLv++g++l++aFPlaya++  +l +pl+++L+gli+R
       EHU02105.1   5 SVIWFAIIVFAVLMYIVMNGFDLGIGLLFPF--NKDAgERDMMVNTVAPVWDGNETWLVLGGAGLYGAFPLAYAVIADALSVPLTAMLIGLIFR 96 
                      589****************************..77888******************************************************** PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.eygflsdllnpfallvglllvalflllGalylalktegelqer 187
                      gvafefr ka + ++r++wd  f++gSlla++ +Gva+g++l G+p++ + ++g ++d+l pf l++g+ lv++++llG+++l++kte+el+++
       EHU02105.1  97 GVAFEFRFKAVE-HHRAFWDKSFIAGSLLATFSQGVAVGAMLDGIPVEGRsFAGSTMDWLAPFPLFCGVGLVVAYALLGCTWLIMKTEHELHRK 189
                      *********964.79*******************************964435588889************************************ PP

  Cyt_bd_oxida_II 188 arrlalvlalvllvllvvvllwtll...............lvllllavlalllavlllrk.kr..eglaflasaltvllvvlllavslfPyllp 263
                      + +la+ l+++ll+++ ++++wt++               +++l+++vl+ll+a+ l r+ kr  ++ +fl+++++++l + +l++s++P+++p
       EHU02105.1 190 MSALATPLLIALLLIIGIISIWTPFthqniahrwfttpnlFLFLPVPVLVLLCAWGLRRAiKReaHYSPFLLTLALIFLGFSGLGISIWPNIIP 283
                      **************************************97577799*********77666655225569************************* PP

  Cyt_bd_oxida_II 264 ssltianaasseytlkvmlivalillplvlaytawlyrvf 303
                      +s++i++aas+++++ +ml+++l+++p++l+yt+w+y+vf
       EHU02105.1 284 PSVSIWDAASPPQSQAFMLVGSLLIIPMILGYTFWSYYVF 323
                      ***************************************9 PP

>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.1   1.7e-05      0.15     182     303 ..     117     251 ..      75     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.7e-05
        PalH 182 iilvGlaliildtilsalllfsk...........kfldalpalsylfelalvtlyaalviyYliskrkyilspkrmketilllilnllvi.llpvv..f 266
                  +++G++l ++++ + +   + +           +++d l ++   + + lv++ya+l + +li+k ++ l+ k      +lli  ll+i ++ +   f
  EHU02105.1 117 SFIAGSLLATFSQGVAVGAML-DgipvegrsfagSTMDWLAPFPLFCGVGLVVAYALLGCTWLIMKTEHELHRKMSALATPLLIALLLIIgIISIWtpF 214
                 578888888888888887777.22455556677899************************************654433344444444444333332114 PP

        PalH 267 fildisnadvaewkeliiwvlkllitvivWewierie 303
                     i++ ++++   ++   + +l++ ++W++   i+
  EHU02105.1 215 THQNIAHRWFTTPNLFLFLPVPVLVLLCAWGLRRAIK 251
                 4456668888887777777788899999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 2787.53
//
Query:       EHU02106.1  [L=55]
Description: hypothetical protein CKS_0621 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-21   74.4  10.4      5e-21   74.3  10.4    1.1  1  DUF2474   Protein of unknown function (DUF2474)
  ------ inclusion threshold ------
       0.04   13.4   0.8      0.043   13.3   0.8    1.1  1  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> DUF2474  Protein of unknown function (DUF2474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3  10.4   5.6e-25     5e-21       2      39 .]      17      54 ..      16      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 5.6e-25
     DUF2474  2 plwkRlgWLvlIWaaSVlaLgvvAlllRllMtaAGlkt 39
                p+wkR++WLv+I++aSVlaLgvvA+l+R++MtaAG+++
  EHU02106.1 17 PWWKRVLWLVVIYSASVLALGVVATLFRMMMTAAGMRS 54
                9***********************************97 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   4.8e-06     0.043     135     173 ..       7      45 ..       1      50 [. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-06
     DUF1129 135 trekkkkkrpplwkrllilllllvvwlvlftlvallpav 173
                 ++e +++ r p+wkr+l l+++  + +++  +va l ++
  EHU02106.1   7 SKERQNETRSPWWKRVLWLVVIYSASVLALGVVATLFRM 45 
                 3448999*********99998887777777666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 451.81
//
Query:       EHU02107.1  [L=288]
Description: right origin-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-19   68.3   0.9    8.8e-19   67.6   0.9    1.4  1  HTH_18     Helix-turn-helix domain
    8.8e-11   41.6   0.1    3.2e-06   27.1   0.0    2.5  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
     0.0013   19.1   0.0      0.002   18.4   0.0    1.2  1  GyrI-like  GyrI-like small molecule binding domain
     0.0017   18.6   0.0     0.0027   17.9   0.0    1.3  1  Cass2      Integron-associated effector binding protein


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.9     2e-22   8.8e-19       5      80 ..      35     109 ..      31     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2e-22
                 HT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   5 lgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                  g+s +++qrlfk+ +g+t ++y r++Rl  A  +L+  t +++ +iA + GF+++++F+r f+++f +tP+ +rr
  EHU02107.1  35 SGYSKWHMQRLFKEMTGQTLAAYTRKRRLTLAAMALR-LTRMPLIDIAVRFGFENQQNFNRVFKNHFSVTPGGFRR 109
                 699*********************************5.7***********************************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.2e-05      0.14       1      41 [.      18      58 ..      18      59 .. 0.93
   2 !   27.1   0.0   7.1e-10   3.2e-06       2      41 ..      71     108 ..      70     109 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41
                ++ nl+++++i+ i    g+S  +++rlFk+ tG+t  +y 
  EHU02107.1 18 IEANLTNDISIDLITLKSGYSKWHMQRLFKEMTGQTLAAYT 58
                678999999999999*********************99985 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 7.1e-10
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 r    t++ + diA  +gf ++++F r+Fk+ + +tP  +r
  EHU02107.1  71 R---LTRMPLIDIAVRFGFeNQQNFNRVFKNHFSVTPGGFR 108
                 5...68999****************************7666 PP

>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.5e-07     0.002      72     123 ..     204     255 ..     181     267 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.5e-07
                 EEECCCCCCGBTTSEEEEE-SEEEEEEEEECEGGGHHHHHHHHHHTHHHHTT CS
   GyrI-like  72 gvtveirvegpeglefleipageyAvfrhkGpyddlqatyaklygewlpesg 123
                 gv+    + gp++l+ +++pag+yA +  +G+ ++l  ++a++y  +lp+ +
  EHU02107.1 204 GVALANTDAGPGDLQCRTVPAGLYARLAWRGSPEELTRFIADIYYLYLPQLN 255
                 4555555599***************************************987 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     6e-07    0.0027      61     130 ..     196     264 ..     186     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6e-07
                 CCGEEEEEEEEE-TTSSS-TT-EEEEE--EEEEEEEEESSSTT-HHHHHHHHHHCHCCHCTEEE-SSEEE CS
       Cass2  61 enkfsyyagvevpsdsevpeglvkkeiPggkYavftiegdfeedlaeaweaiygellpnsnyerrggpdf 130
                 ++++s + gv   + +  p +l  +++P+g Ya+   +g+ ee l +++  iy   lp+ n ++r g+d+
  EHU02107.1 196 QQHISLFRGVALANTDAGPGDLQCRTVPAGLYARLAWRGSPEE-LTRFIADIYYLYLPQLNVACRPGMDL 264
                 56677777777777888899999*****************776.***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2531.69
//
Query:       EHU02108.1  [L=64]
Description: hypothetical protein CKS_0623 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 554.45
//
Query:       EHU02109.1  [L=188]
Description: hypothetical protein CKS_0625 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-19   68.6   0.3    8.2e-19   68.3   0.3    1.2  1  SIP            Siderophore-interacting protein
    2.1e-15   57.0   0.0    3.2e-15   56.4   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.3   9.2e-23   8.2e-19       3     118 ..      72     187 ..      70     188 .] 0.94

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 9.2e-23
         SIP   3 wvllagDeTAlPAiaaiLeelpadaqvravievpdaadelelsapaaveltwlvrega.aaagelLaealrelelpagelyvwvagEaavvkalRrhlv 100
                 ++l+++DeT+lPA++++ +++ +  + +++   +++  + +l+   +++++wl +++  +aa ++L++al +++ p+++ ++w++gE +vvk+l ++++
  EHU02109.1  72 FQLYVCDETGLPAFQRRSRSI-EAETLHLFAFTDEKTGRDYLADTGKANVAWLGSQQMtQAALPALTAALDKIAIPSHDAFIWLTGEGRVVKQLADYFT 169
                 6899*****************.6667888999999999****************999999999************************************ PP

         SIP 101 kergldrkqvaamgYWrr 118
                 ++rg+d + v+a++YW++
  EHU02109.1 170 TQRGVDADLVRAVAYWHH 187
                 ****************98 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   3.5e-19   3.2e-15      58     120 ..       6      63 ..       1      64 [. 0.89

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 3.5e-19
  FAD_binding_9  58 qeweelpederpvmRtYtvraldaeaeeldidfvlHgdegpaarwAaqAqpGdelaivgPgga 120
                    ++w   ++  rp  R+Yt+ ++d e + l+idf+lH++ g+a++wAaqAq+Gd l i gP+g+
     EHU02109.1   6 IHW---KDGLRPAARDYTPFDFDGE-SSLTIDFYLHES-GVASDWAAQAQTGDSLIIGGPRGS 63 
                    446...7889*********999976.57*********9.**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1649.47
//
Query:       EHU02110.1  [L=177]
Description: PadR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-15   54.7   0.0    1.2e-14   54.0   0.0    1.3  1  PadR      Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   6.7e-19   1.2e-14       1      74 [.      38     107 ..      38     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 6.7e-19
                 HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR   1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 +L+ ++++ s+Gye+ik +eels+g++ +s+G +Yp+L+ Le+ + +e    ++    +rk Y +T++G++ l+
  EHU02110.1  38 MLHFIAQRASHGYELIKCVEELSKGEYSPSPGIIYPNLTLLEEMEAIEIVDPQA----ARKAYVVTATGQAMLE 107
                 699**********************************************98875....9***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1588.30
//
Query:       EHU02111.1  [L=97]
Description: hypothetical protein CKS_0627 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-32  110.9   0.0      3e-32  110.6   0.0    1.1  1  Rdx       Rdx family


Domain annotation for each model (and alignments):
>> Rdx  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   1.7e-36     3e-32       2      74 .]       6      78 ..       5      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 1.7e-36
                EEEEEETTTTTHHHHHHHHHHHHHHCCCCSSEEEEEEESTT-EEEEETTEEEEEHHHHTSS--HHHHHHHHHH CS
         Rdx  2 vtIeYCtqCkwmlraaelaqellstfpeslgevalqpstgGaFeVtldgelvwsrkeeggfpetkelkqrvrd 74
                v+I+YCtqC+w lr a++aqell tf+++l++v+l+p++gG+FeVt+d++lvw+rk++ggfp++++lkqrvrd
  EHU02111.1  6 VVIHYCTQCNWLLRSAWMAQELLHTFAQDLASVTLRPGSGGIFEVTVDDHLVWERKRDGGFPDAQVLKQRVRD 78
                89*********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 878.56
//
Query:       EHU02112.1  [L=327]
Description: alcohol dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-09   38.3   0.0    1.8e-09   37.6   0.0    1.3  1  ADH_zinc_N     Zinc-binding dehydrogenase
    9.1e-05   23.5   0.0    0.00015   22.8   0.0    1.4  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
     0.0018   17.8   0.0     0.0025   17.3   0.0    1.2  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0031   17.0   0.0     0.0055   16.2   0.0    1.3  1  adh_short      short chain dehydrogenase
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.078   12.9   0.0    1.8  2  ADH_N          Alcohol dehydrogenase GroES-like domain
      0.029   13.8   0.0      0.044   13.2   0.0    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   6.2e-13   1.8e-09       1     116 [.     159     272 ..     159     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 6.2e-13
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.E CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.f 97 
                 gvG++ v l++ lG evia ++ ++    +   lGa+++ ++ e  l++  k l  +e   ++++ vG  +tl++ l+ ++++G ++ +G+ +g +   
  EHU02112.1 159 GVGSFSVSLLAKLGYEVIASSGRASDENWLINtLGAKRIMDRAE--LSQPGKPLG-KERWAAAIDSVG-SHTLSNVLAGTQRDGVVAACGMAQGLDLpT 253
                 9******************88877766555444*********55..888888888.889*********.*********************844433259 PP

                 EHHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgs 116
                 ++++++l+ +++ G+    
  EHU02112.1 254 SVAPFILRGVTLAGVDSVM 272
                 9999********9976655 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.1e-08   0.00015       1     133 []     192     324 ..     192     324 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.1e-08
                   TT-SEEEETT.STTHH..HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.......-H CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe..aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas......aqa 87 
                   lGA+ + d       +  + +g+e   +++d+vg+++l +++l+   ++ G +   g+   +++l  p++ +    ++ ++l  + +       + +
    EHU02112.1 192 LGAKRIMDRAeLS--QpgKPLGKERWAAAIDSVGSHTL-SNVLAGTqRD-GVVAACGM---AQGLDLPTSVA-PFILRGVTLAGVDSVmcpkplR-Q 279
                   5666666555222..1357888889999******9999.8888777455.88866663...34555555533.3444444444333335555745.5 PP

                   HHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  88 dileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++ ++l++l+ + +l   ++ v pl+ea +  r+l +g++rG++V+
    EHU02112.1 280 KAWQRLGQLMNDAQLSQMIT-VIPLSEASQGARDLLEGKVRGRLVV 324
                   55*****************8.************************8 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   8.2e-07    0.0025       1      38 [.     151     188 ..     151     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.2e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasnta 38 
                 +lVtGa+G +Gs  v  l++ gyevi+ + + s++n+ 
  EHU02112.1 151 VLVTGASGGVGSFSVSLLAKLGYEVIASSGRASDENWL 188
                 79*************************99998887765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06    0.0055       3      44 ..     151     192 ..     150     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-06
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakel 44 
                 vlvtGas+G+G   +  lak G++v++ + ++++ + +++ l
  EHU02112.1 151 VLVTGASGGVGSFSVSLLAKLGYEVIASSGRASDENWLINTL 192
                 89*************************666655555555555 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.078       2      48 ..      29      75 ..      28      95 .. 0.86
   2 ?   -1.5   0.0      0.78   2.3e+03      87     108 ..      91     112 ..      75     113 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEEST CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgp 48
                ++v+++v++++++  D   + ++  + +++p+++G ++vG v++  +
  EHU02112.1 29 QDVTLDVHYSTLNYKDALAICNKGPIVREFPMVPGIDFVGRVVASQH 75
                6899************98888889******************99653 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.78
                 TTTSS-SSSBSEEEECGGGEEE CS
       ADH_N  87 lgvsldGgfaeyvvvpekklvk 108
                 +g + +Gg+a++ +v  + lv+
  EHU02112.1  91 VGEKHWGGLAQKACVAGDWLVP 112
                 4555899999999998888877 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.5e-05     0.044       1      35 [.     152     186 ..     152     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfn 35 
                    L+TG +G +Gs+ + lL + gyev+    r+s  n
     EHU02112.1 152 LVTGASGGVGSFSVSLLAKLGYEVIASSGRASDEN 186
                    9***********************99888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2840.48
//
Query:       EHU02113.1  [L=716]
Description: ornithine decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-192  640.5   0.0   1.2e-192  640.2   0.0    1.1  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
    5.6e-46  156.1   0.0    1.3e-45  155.0   0.0    1.6  1  OKR_DC_1_C       Orn/Lys/Arg decarboxylase, C-terminal domain
      3e-11   43.6   0.0    5.4e-11   42.7   0.0    1.5  1  OKR_DC_1_N       Orn/Lys/Arg decarboxylase, N-terminal domain
     0.0094   15.3   0.0      0.017   14.4   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  640.2   0.0  2.8e-196  1.2e-192       1     416 [.     105     546 ..     105     547 .. 0.99

  Alignments for each domain:
  == domain 1  score: 640.2 bits;  conditional E-value: 2.8e-196
                 -HHHHHHHHHHHH---SSSSSTTTTTCGGGGSHHHHHHHHHH-HHHHHT---TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHH CS
    OKR_DC_1   1 pPlykaLvkyveegkvsfavPGHqgGavfkkePagrlfydffGenllraDlsievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvl 99 
                 pP++++L++yv++++++fa+PGHqgGa+fkk+Pag++fydf+Gen++r+D+++++v+LgdLl+heG++k+aqk+aa+vf+adk+yfv+nGTss+nkvv+
  EHU02113.1 105 PPFFETLTRYVDMQNSTFACPGHQGGAFFKKHPAGKQFYDFYGENVFRSDMCNADVKLGDLLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSSANKVVT 203
                 8************************************************************************************************** PP

                 HHH--TTEEEEEESS--HHHHH.HHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTTGS.....ESEEEEESS-TTSEEE-HHHHHHH CS
    OKR_DC_1 100 navltpgdlvlvdRNcHKSieh.alvlsgatPvylepernalgiiggidlkefeeetlkekikevpdaka.....prlavitnsTYdGvlynakeivdk 192
                 na+lt+gdlvl+dRN+HKS++h al+++gatPvyle++rn++g+iggid+++f+e++l+ +i++v++++a     +rla+i+++TYdG++yna+++vd+
  EHU02113.1 204 NALLTRGDLVLFDRNNHKSNHHgALIQAGATPVYLEAARNPFGFIGGIDAHCFDEDYLRAQIANVAPERAqearpFRLAIIQLGTYDGTVYNARQVVDR 302
                 *********************************************************************999*************************** PP

                 HTTSESEEEEE-TT-TTGGGSGGGTTSSSSSSS.-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT......--HHHHHHHHHHTS-SS--HHHHHHH CS
    OKR_DC_1 193 leklsdrilfDeAwvgyeqfiplyadaskllae.nendpgilvtqSvHKllaalsqaSlihvkeeli......vneerlneafmmhattSpsYpllAsl 284
                 +++l+d+ilfD+Aw gyeqfipl++++s+l++  ne+dpgi+vtqSvHK+la++sq+S+ih+k+++i      ++++rln+afm+ha+tSp+Ypl+A+l
  EHU02113.1 303 IGHLCDYILFDSAWLGYEQFIPLMEGCSPLTLSlNEKDPGIFVTQSVHKQLAGFSQTSQIHKKDNHIrgqkrfCPHKRLNNAFMLHASTSPFYPLFAAL 401
                 *************************************************************************************************** PP

                 HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSS---EESS-SEEESTS..............GEEE-TT-TTT--TT--TTSEEE-TTEEEEE-SS CS
    OKR_DC_1 285 dvaakmlegesgrrlleevveraielrkeikrldnaelikpvnpevvdeke..............ffklepgekWhgfediadeqyflDPiKlliltPG 369
                 d++akm++ge+grr+++e+v  +ie+rk+i   +++ +i p+ pe+v++k+              +f++ep++kWhgf +++ +qy +DP+Kll++tPG
  EHU02113.1 402 DINAKMHQGEAGRRMWDECVMLGIEARKAI--FERCDMILPFVPETVNGKRwqdapteeiardlhYFSFEPNAKWHGFAGYDRDQYRVDPCKLLLTTPG 498
                 ******************************..******************************************************************* PP

                 B-.TTSSB-SS---HHHHHHHHHHTT---SEEESSEEEEE--TTS-HH CS
    OKR_DC_1 370 id.edGeleelGvpaaivakyLrengivvektdlynilflltlgedkt 416
                 id  +Ge+ ++G+pa+i+a+yLrengiv+ek+dl++ilfllt++e+ +
  EHU02113.1 499 IDaASGEYADFGIPATILANYLRENGIVPEKCDLNSILFLLTPAESPE 546
                 **99****************************************9865 PP

>> OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   2.8e-49   1.3e-45       1     131 [.     572     701 ..     572     702 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 2.8e-49
                 SHHHHHHSHHHHTT-BHHHHHHHHHHHHHHHTHHHHHHHHCCS..--EESS-HHHHHHHHHTT-EEEEEGGG-TTSBBSS-BEECTT-S-SB-TTEE-- CS
  OKR_DC_1_C   1 lPelvkekperYegmtlrdLcqemhdlykeakvaelqkeafsk..lpepamtpaeayeelvrgevelvpldelegriaaelvlpyPpGipllvpGErlg 97 
                 lP+l++++ +rY+g+tlr+Lcqemhdly + +v++lq+ +f++  lp+++++p++a+++++rg+velvp++ +egria+e++lpyPpG++++vpGE + 
  EHU02113.1 572 LPTLYRKNAKRYAGYTLRRLCQEMHDLYVSFNVKDLQRLMFREqgLPQVKVNPQDAHQAYIRGDVELVPIASAEGRIAVEGALPYPPGVLCVVPGEAW- 669
                 8*****************************************99******************************************************. PP

                 CCCHHHHHHHHHHHHHCCCSTTS--EEETEEE.T CS
  OKR_DC_1_C  98 eeskaildYlkaleefdnkfPGFeteiqGvevee 131
                    +a+++Y++ale+++n++PGF++e+qGv++ee
  EHU02113.1 670 --GGAVQRYFLALEAGINQLPGFSPELQGVYTEE 701
                 ..*****************************987 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.2e-14   5.4e-11       1      71 [.       4      67 ..       4      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.2e-14
  OKR_DC_1_N  1 lkgaairelaealek.egfevvgvtstdDllsvieqnsriaavvlsvddeaaelldeirernedlPvFllae 71
                lk+aa++++a +l+  + ++vv++++td        ++++aavv+s++d ++++l+ +r+++++lPvF++  
  EHU02113.1  4 LKIAASAAVAPSLSLnTARDVVTLDNTD--------FTDVAAVVVSLADTRSGVLALLRHTGFNLPVFVANA 67
                6999********997799**********........*********************************976 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-06     0.017      34     107 ..     172     254 ..     152     299 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-06
                      HHHHHHHHHHHTT-SEEEEES-HHH.HHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT..........T CS
  Beta_elim_lyase  34 vnrLedavaelfgkeaalfvpqGta.Ansillkillqrgeevivtepahihfdetgaiaelagvklrdlknkea..........G 107
                       ++ ++ +a++f ++++ fv +Gt  An++  ++ll rg+ v++++++h  ++   a+   ag++++ l+ +++           
       EHU02113.1 172 AKHAQKFAAKVFNADKTYFVLNGTSsANKVVTNALLTRGDLVLFDRNNHKSNHHG-ALI-QAGATPVYLEAARNpfgfiggidaH 254
                      567788899**************9549*******************998776643.333.3566666666666566666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5481.63
//
Query:       EHU02114.1  [L=229]
Description: IS66 family transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-15   56.5   0.0    1.6e-14   53.9   0.0    2.2  2  HTH_Tnp_1     Transposase
    1.4e-06   27.9   0.0      0.017   14.9   0.0    2.3  2  HTH_23        Homeodomain-like domain
     0.0034   17.5   0.0       0.66   10.2   0.0    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.054   13.4   0.1       0.68    9.9   0.0    2.3  2  MarR_2        MarR family
      0.084   13.4   0.2        3.4    8.3   0.0    2.6  3  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.9e+03      14      38 ..       9      33 ..       8      37 .. 0.83
   2 !   53.9   0.0   4.6e-18   1.6e-14       3      57 ..      91     145 ..      89     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspn 38
                +++++ +++    +e  rr+g+ + 
  EHU02114.1  9 EALHLHFDENLARVEAGRRLGIPKT 33
                67788889999999999****9875 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 4.6e-18
   HTH_Tnp_1   3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspae 57 
                 rr  ++++fK+++V+ sl+pg++v+++Ar+ g+++n L++Wr++yr+g++ +  +
  EHU02114.1  91 RRPNFPRAFKIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRKGLLLPHNS 145
                 6789******************************************999876665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.8e-06     0.017       9      46 ..       9      47 ..       7      48 .. 0.88
   2 !   10.7   0.0   9.7e-05      0.35      11      46 ..     104     139 ..      97     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.8e-06
      HTH_23  9 rillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                ++l+l+ +  l + e+ r+Lg+++ Tv+    r+r+ Gl
  EHU02114.1  9 EALHLHFDeNLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                67777776699999*********************9998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.7e-05
      HTH_23  11 llllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                 +   ++ G +v++ Are g++ + + +w++ y ++Gl
  EHU02114.1 104 VEKSLQpGTNVAQLARENGINDNLLFNWRSLY-RKGL 139
                 4445568999**********************.5775 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0076        27      11      41 ..      16      47 ..       5      53 .. 0.81
   2 !   10.2   0.0   0.00018      0.66       2      40 ..     100     138 ..      99     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0076
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGi 41
                + + ++ ea r+lgi  +tv ++  r+++ G+
  EHU02114.1 16 DENlARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                45557889************999999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00018
      HTH_28   2 Rleiikllaa.GhsvreaArelgisrrtvyrWikryeegG 40 
                 ++  ++  ++ G +v+++Are gi+   +  W++ y++ G
  EHU02114.1 100 KIALVEKSLQpGTNVAQLARENGINDNLLFNWRSLYRK-G 138
                 5555655565588************************9.5 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00019      0.68      10      50 ..       7      47 ..       4      47 .. 0.91
   2 ?    0.7   0.0      0.14     5e+02      18      33 ..     110     123 ..     102     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +L aL+ + +++l+  e  rrlg++k +v  +  r+ +aGL
  EHU02114.1  7 LLEALHLHFDENLARVEAGRRLGIPKTTVCDLFVRFRKAGL 47
                6888888888889999***********************98 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 TTSEEEHHHHHHHHTS CS
      MarR_2  18 pgrdltvgelarrlgl 33 
                 pg   +v++lar+ g+
  EHU02114.1 110 PG--TNVAQLARENGI 123
                 66..799******998 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058   2.1e+02      25      55 ..      18      48 ..      10      51 .. 0.86
   2 ?    8.3   0.0   0.00094       3.4      14      71 ..     100     154 ..      85     166 .. 0.78
   3 ?   -2.9   0.0       2.9     1e+04      59      71 ..     207     219 ..     196     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.058
  LZ_Tnp_IS481 25 rrtvaqvarelGvslrtaykwlarfraeGld 55
                  + +  ++ r lG+ + t      rfr  Gl 
    EHU02114.1 18 NLARVEAGRRLGIPKTTVCDLFVRFRKAGLS 48
                  5555678999*****************9995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00094
  LZ_Tnp_IS481  14 rvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldrssrPrrvPkat 71 
                   ++ lv++ ++    vaq are G+  +  + w + +r  Gl  ll   s P   P   
    EHU02114.1 100 KIALVEKSLQPGTNVAQLARENGINDNLLFNWRSLYRK-GL--LLPHNSEPALLPVML 154
                   56799***************************999984.44..455666666666555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.9
  LZ_Tnp_IS481  59 drssrPrrvPkat 71 
                    r sr   +P+a 
    EHU02114.1 207 KRGSRCSPSPQAH 219
                   5777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1884.49
//
Query:       EHU02115.1  [L=39]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   24.0   0.0    2.9e-05   23.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-09   2.9e-05      71     100 ..       2      30 ..       1      31 [. 0.92

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-09
   TnpB_IS66  71 wpkeeeeeaveltaeqlelLleGldlervk 100
                 wp  +++++v+lt++ql++LleG+++++++
  EHU02115.1   2 WPL-TRDGKVHLTPAQLSMLLEGINWKHPQ 30 
                 996.9999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 370.35
//
Query:       EHU02116.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-98  329.0   4.4    8.1e-98  327.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    1.2e-16   60.6   0.0    5.2e-16   58.6   0.0    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    7.2e-15   55.1   1.8    1.6e-14   54.0   1.8    1.6  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.6e-11   44.8   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.016   15.0   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   14.0   3.3      0.041   13.5   0.7    2.0  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.055   12.7   0.5      0.094   11.9   0.5    1.3  1  Tho2             Transcription factor/nuclear export subunit 
      0.059   13.7   3.0       0.11   12.8   3.0    1.4  1  Troponin         Troponin
       0.11   12.3   2.6       0.33   10.6   0.4    2.2  2  LXG              LXG domain of WXG superfamily
       0.13   12.2   0.6         16    5.5   0.0    3.1  3  UME              UME (NUC010) domain
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.21   11.9   3.1       0.59   10.5   3.1    1.8  1  HalX             HalX domain
       0.36   10.9  10.9       0.66   10.0  10.9    1.4  1  DHR10            Designed helical repeat protein 10 domain
       0.49   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.1  12.7      0.056   12.0   6.9    1.9  2  FUSC             Fusaric acid resistance protein family
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        3.1    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        6.5    6.3  10.0        6.1    6.3   7.9    1.9  2  HAUS-augmin3     HAUS augmin-like complex subunit 3


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7       0.1        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  327.4   0.0    9e-101   8.1e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU02116.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 327.4 bits;  conditional E-value: 9e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02116.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02116.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +ae+rla+r++++  l+++l++w+++q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags+ G+e
    EHU02116.1 380 GSPAEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDSGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   5.8e-19   5.2e-16       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 5.8e-19
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi+T++lNgv+P+a+L++vL  ++d ++++++++LLPW
      EHU02116.1 479 SLIGTCRLNGVEPEAWLRYVLGYIQD-WSVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   1.8   1.8e-17   1.6e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02116.1 128 ETACPACGGELNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   3.9e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.9e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU02116.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4     3e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02116.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.7e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02116.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4    0.0001     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02116.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02116.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   4.6e-05     0.041     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?    0.8   0.1      0.32   2.9e+02     125     177 ..     351     415 ..     343     453 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU02116.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.32
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............eeqleelerrlekaikrlleekkqrleklasr 177
                   d+ a TPt +   +++++ +l            e++l+  ++r+   +++l +  +++++ l+++
    EHU02116.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaEDRLAVRKARTVALMQSLYDWIQSQMKVLSRH 415
                   78899999999999988877777777777777755555555565555555554444444333333 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5    0.0001     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU02116.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00012      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU02116.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00037      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1       0.2   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02116.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.2
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU02116.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         2   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0       0.1        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.5   0.0     0.018        16       9      40 ..     341     372 ..     339     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02116.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU02116.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.018
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02116.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9986 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8   0.00029      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02116.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00066      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00066
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU02116.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00074      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00074
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02116.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0038       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2      0.09        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0038
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02116.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.09
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02116.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.3e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81
   2 ?   -1.4   0.3      0.71   6.3e+02     204     262 ..     378     428 ..     337     456 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02116.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.71
        FUSC 204 rsqaayesprirararalrrllsrmlallal.lsslarllarlraeeaaavpelaallae 262
                 +    +e++        l+   +r++al+++ ++ ++++++ l++++++a +++a ll++
  EHU02116.1 378 IRGSPAEDR--------LAVRKARTVALMQSlYDWIQSQMKVLSRHSDTA-KAFAYLLKQ 428
                 333333333........333333333333220233334444444433333.234444444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1    0.0019       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02116.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0075       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0075
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU02116.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0068       6.1      70     152 ..      13      97 ..       2     111 .. 0.82
   2 ?   -1.8   0.0         2   1.8e+03     132     166 ..     383     417 ..     375     434 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0068
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU02116.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
  HAUS-augmin3 132 aqeelraenaetnavLqqlteeakqlaeyfeeaek 166
                   a++ l+++ a+t a++q+l +  +++++ ++  + 
    EHU02116.1 383 AEDRLAVRKARTVALMQSLYDWIQSQMKVLSRHSD 417
                   56778899999999999999999988888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1463  (0.0815996); expected 358.6 (0.02)
Passed bias filter:                     1033  (0.0576162); expected 358.6 (0.02)
Passed Vit filter:                       149  (0.00831056); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 3910.51
//
Query:       EHU02117.1  [L=840]
Description: putative outer membrane usher protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-144  480.9  19.1   1.3e-143  479.8  19.1    1.5  1  Usher     Outer membrane usher protein
    4.8e-25   88.3   0.0      1e-24   87.2   0.0    1.5  1  PapC_N    PapC N-terminal domain
    1.3e-14   53.8   0.2    1.3e-13   50.6   0.1    2.7  2  PapC_C    PapC C-terminal domain
  ------ inclusion threshold ------
      0.029   14.2   2.0        7.5    6.4   0.0    3.3  3  fn3_3     Polysaccharide lyase family 4, domain II


Domain annotation for each model (and alignments):
>> Usher  Outer membrane usher protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.8  19.1  2.9e-147  1.3e-143       1     551 []     185     750 ..     185     750 .. 0.95

  Alignments for each domain:
  == domain 1  score: 479.8 bits;  conditional E-value: 2.9e-147
                 EEEEEEEEEETTEEEEEEE..EEEEEE----EEEEEEEEEEEEETTTTEEEEEEEEE--SSSS---EEEEEEEEE-GGGS-CCCCCEEEEEEEEESSSE CS
       Usher   1 ylnlqsGlNlgaWrLrsdsqlswsksegnenkwkssrtylqraipqlkskLtlGesytssdiFdsvsfrGvsLasddnmlPdslrgyaPevrGiArtnA 99 
                 yl ++sG+N+g Wr+r++   +++++e   n+w+s + ++qra+p+l+s+  +Ge ++++d+F  vsf GvsL sdd+mlPds rgyaP vrG+A++nA
  EHU02117.1 185 YLGINSGINVGMWRFRQQG--NFTHDEVG-NRWQSAKAWVQRALPSLRSEAGIGELFSNGDLFTAVSFNGVSLDSDDRMLPDSVRGYAPLVRGVANSNA 280
                 56789**************..99999995.9******************************************************************** PP

                 EEEEECTTEEEEEEEE-SEEEEE-S---TTTTCEEEEEEEETTS-EEEEEEEE---TT---TT-EEEEEEEEEEE-SSTTB---EEEEEEEEEE-GGGE CS
       Usher 100 kVtirqnGyviYqtlVppGpFeiqdlnptsssgdLdVtveEadGsvqeftvpyasvplllreGqvrYklaaGryrsnnsqqekpffiqaevsyGlpngl 198
                 +Vt+ q    iYqt+VppGpF+i+dl+p s++gdL V+v+E+dGs ++f+vpya +p+ lr+G++ Y++aaG++r+    ++  +f++ +v++Gl+n +
  EHU02117.1 281 RVTVWQGKQRIYQTTVPPGPFTINDLSPVSYGGDLSVEVQESDGSLHRFSVPYAVLPQSLRPGRTDYNFAAGKVRDY---SKANTFTELTVRHGLSNAI 376
                 ***************************************************************************99...6899*************** PP

                 EEEEEEEEESSEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSEEEEEEEEEEEEEE-B-TTSEEEEEEEEEEE-TT---HHHHSBSSEE-...---EE CS
       Usher 199 tlYgGlllaedYqAlalglgknlgelGalSvdvtqsrskldkqskekGqsyrlsYakslnetgtniqlagyrystkgfvtlsdaldarkke...kdenn 294
                 tl+gG+ l e+Y+A+++g  ++  ++Ga+ ++   s++ l+ +++ +G +y lsY+++++ t+t++++agy+yst+g++ l+d++  ++ e    ++  
  EHU02117.1 377 TLNGGVRLGERYHAVLAGGVWAS-DIGAVGFNSAYSSAVLNGGESTQGWRYALSYSRTFQPTNTTLTFAGYQYSTQGYRDLNDVIALNNAEtpgRNSIT 474
                 ******************88887.*************************************************************99988888888899 PP

                 TTS-EEEEEEEEEEEEESSSEEEEEEEEEEEESSS--EEEEEEEEEEEEETT.EEEEEEEE..EEE-SSS-SE...............EEEEEEEEEEE CS
       Usher 295 ltnnkkeklqlnvsqslgdygslylsgsrqtYwktsqknknlqlsyntnigr.vsvslsls..asksenenee...............ddllslnlSiP 375
                 +++ ++ +lq++++q+lg++g++ylsgs+q+Y++  + ++++q++y t + + + +++sls  +s++++ ++                d +l++++S+P
  EHU02117.1 475 SEYMQRTRLQMTLNQTLGQWGNIYLSGSKQNYYDGRSRTTQFQVGYGTVLPKnIALNISLSrqYSRRAYATDPrravmaqyadetfykDTQLQVSVSVP 573
                 999999*****************************************9997776555555500555555554466777777777899999********* PP

                 SGGGS-TEEEEEEEEEESSSTEEEEEEEEEEESSTTEEEEEEEEEEESTSS-.EEEEEEEETSSEEEEEEEEEESSEEEEEEEEEEEEEEETTEEEEES CS
       Usher 376 lgrllsranasysltrnnsgktssetgvsgtllddnlsYsvnaglssdgkes.lsanlsyqasygevslsysysrdysqlnlslsGgvvahakGvtlsq 473
                 lg+  ++ +++++ +r +++ +++ + +sg + ++ +sYs+n +++++++++ +s++l   +s ++v++ +s s+  +q++++  G +v+h+ Gvtl++
  EHU02117.1 574 LGTDATSPYLALGGSRGSQNGSNYTASLSGLSGESGTSYSLNVNRDQQQRDTtVSGSLGKTFSEASVTGTASTSSRFNQMSVNAMGAAVIHSGGVTLGH 672
                 ***99999***************************************999999********************************************** PP

                 ---SSEEEEE-TT-TS-BBTTSTT-B--TTSEEEES---TTS-EEEEB-GGGS-TTEEES-SEEEE-B-TT-EEEEE- CS
       Usher 474 elgdtrvlikadgvagvrvenqtgvktdrrGyavvpyltpYrenrveldtnklpedvelentvaqvvpteGAvvkaeF 551
                 +lgdt++l++a+g++g+r+ n++g ++dr+Gya+vp+l+pY++n++ l  +  + +ve++ + ++v p+ GA+vk++F
  EHU02117.1 673 YLGDTFALVEAKGARGARILNSQGSEIDRFGYALVPSLNPYHYNTITLGASGSDGHVEIQDSEKSVAPYAGAMVKVSF 750
                 ****************************************************************************98 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   2.2e-28     1e-24      23     145 ..      52     169 ..      31     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.2e-28
                 T-SS-SEEEEEEEEETTEEEEEEEEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGHHTSTTSC--HHHHSTT-EEEEETTTTEEEEE--GGGBSTT CS
      PapC_N  23 gnavlpGeYrvdvyvNgkeigrqevefkaekkkkklepcltrelleqlgvkleklpelakaqeeeCvdlsalipgasvkfdlakqrLdlsiPqaalkns 121
                 +  ++pG+Y+v++y+Ngk+ ++++v++++   + +l++cl  ++++++gvk + l++l++++   C++ +al+ gasv+++++++r d+++Pqa+  ++
  EHU02117.1  52 DAWFQPGRYDVNLYLNGKFQQSTSVDIVR--AGRALSVCLPLSFYQAFGVKAHYLTALKAKD---CARPDALLTGASVNVNTGSLRVDVTVPQAMRVQR 145
                 55689*********************998..7************************999987...********************************** PP

                 STTSSXCCGSBSXTTEEEEEEEEE CS
      PapC_N 122 argyvspeewdeGinaallnYnan 145
                 + gy+ pe++ +G +++++nYn+n
  EHU02117.1 146 PVGYIAPENLTAGTTMGFVNYNLN 169
                 **********************99 PP

>> PapC_C  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.31   1.4e+03      28      42 ..     490     504 ..     480     505 .. 0.82
   2 !   50.6   0.1   2.8e-17   1.3e-13       2      65 ..     760     823 ..     759     824 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.31
                 EB-CCCEEEEECE-S CS
      PapC_C  28 iVgqgGqvylrglpd 42 
                 + gq G++yl+g ++
  EHU02117.1 490 TLGQWGNIYLSGSKQ 504
                 67999******9876 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 2.8e-17
                 EEEEETTTEE--TT-EEEETTSSS-EEB-CCCEEEEECE-SEEEEEEES-SSTTSEEEEEEE-- CS
      PapC_C   2 ltltradGkplPfGAevtdeengkvgiVgqgGqvylrglpdqgtLtvkwgegssqqCrasytlp 65 
                 l+ +++ +  +P+GA++ de +++vg+ gqgG+++lr  + qg+L++ wg++++++C ++y++p
  EHU02117.1 760 LKTRTNRDAMVPVGADLLDETGKRVGTFGQGGNAWLRVAKTQGRLKAVWGDDAQSSCVMDYHIP 823
                 5667778999**********88889*************************************99 PP

>> fn3_3  Polysaccharide lyase family 4, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0017       7.5      44      71 ..      57      83 ..      55      87 .. 0.85
   2 ?    5.7   0.1    0.0028        13       6      47 ..     273     311 ..     264     314 .. 0.78
   3 ?   -3.3   0.2       1.9   8.4e+03      23      30 ..     444     451 ..     432     454 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0017
       fn3_3 44 pGtYrltvYadglfgdykqdsvtVt.agk 71
                pG+Y + +Y +g f+++  +sv +  ag+
  EHU02117.1 57 PGRYDVNLYLNGKFQQS--TSVDIVrAGR 83
                9****************..9998864665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0028
       fn3_3   6 sglavltgs....vvsfqnetkayQYwteadssgsftipnVkpGtY 47 
                 +g+a    +    v+ +q++  +  Y t++   g fti++  p +Y
  EHU02117.1 273 RGVA----NsnarVTVWQGK--QRIYQTTVP-PGPFTINDLSPVSY 311
                 3444....3445599*****..********6.7******9998877 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.9
       fn3_3  23 kayQYwte 30 
                  +yQY t+
  EHU02117.1 444 AGYQYSTQ 451
                 489**996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.49
# Mc/sec: 5105.97
//
Query:       EHU02118.1  [L=427]
Description: putative exported protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-24   86.0   0.1    6.6e-24   84.9   0.1    1.5  1  Fimbrial  Fimbrial protein


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.1   3.7e-28   6.6e-24       9     154 .]     249     427 .]     243     427 .] 0.80

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 3.7e-28
                 .E-SSSEEEHHHSSEEEEEEEETGGSBSTEBEEEEEEEEEEEE-TT.......THSEEEEEEE.E-BSSTTTTEB--BSST.TT..............- CS
    Fimbrial   9 traatCeitagtpatVdfpkisvqelnngegsrsapfeiqvqCssg.....gqnaigiqvsss.gsaaaqspnllltssgasal..............a 87 
                 + ++ C+ +++t+ +V fp is+++ln g ++++ap +i++ C +g     g ++ ++ ++++ ++aa  +++ l  ++g++                a
  EHU02118.1 249 NMTQGCRMENYTA-NVLFPGISINALNEG-QAVTAPLSITLACANGtenlsGVQSGQLSLGFQpSYAAWLQAQQLGLTTGDGLSrylvsdhydslpslA 345
                 56899*******9.***************.****************88877666677777777988877776666666666522468************ PP

                 SSEEEEEEETTSSB...E...-BSSS-................EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEEE CS
    Fimbrial  88 tgVGIrlydsngta..ll...tlnaav................sgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvkyq 154
                 +gVGI+l++s+g++  +l        +                sgs+++  +l+  + tf+A+l klpg+t+taG+v+AtA + ++ q
  EHU02118.1 346 KGVGIQLETSGGQPvsFLswsS----FsgsagwrpvledaqviSGSQQNDEKLY--QRTFNARLAKLPGKTVTAGHVDATASILIRLQ 427
                 **************85333441....3355568888866656666677777776..599************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3073.25
//
Query:       EHU02119.1  [L=251]
Description: putative pili assembly chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-25   90.0   0.0    1.7e-25   89.4   0.0    1.3  1  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi
    1.3e-06   28.7   0.2    7.3e-06   26.3   0.1    2.2  2  PapD_C    Pili assembly chaperone PapD, C-terminal domain


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.8e-29   1.7e-25       2     121 ..      19     141 ..      18     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.8e-29
                 EEESSSEEEEETTSSEEEEEEEE-SSS-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEE.EE..SS---SSS-EEEEEEEEEE---- CS
      PapD_N   2 vviggtrviynadekeasvtvkNtgkepylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRi.vt.agkklpkdrEslfwlnvkeiPpkk 98 
                 v ++++r+i++ +e ++ + + N+g++p+l+q+wvd+g  e++++++   pfv++P +f+l+ +e++++ +  t  +++lp+drEsl+wln+ ei ++k
  EHU02119.1  19 VIPQQSRLIFHPGEVQTPLLLVNSGDAPVLIQTWVDSGAPEKSPGSKAF-PFVALPGVFTLNKDEKKQITVlRTeLAATLPQDRESLYWLNLYEISAVK 116
                 67899***********************************999998888.*********************53346788******************99 PP

                 -...TCEEEEEEEEEEEEEEEEEEE CS
      PapD_N  99 kk..kekknklqlalrsriklfyrP 121
                 k   +  + k+++al++++k++ rP
  EHU02119.1 117 KGtiQPGSDKISMALNTQLKVINRP 141
                 5567899*****************9 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   1.9e+03      25      37 ..     115     127 ..     103     142 .. 0.63
   2 !   26.3   0.1   8.1e-10   7.3e-06       2      61 ..     171     237 ..     170     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
                 EEEEEE-TTEEEE CS
      PapD_C  25 leagmvaPfssat 37 
                 +++g++ P+s + 
  EHU02119.1 115 VKKGTIQPGSDKI 127
                 3446666666654 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 8.1e-10
                 EE-SSS-EEEEEEEEEETTEEEEEEE...EEE-TTEEEEE....TT--S--TT-EEEEEEE-TTS-E CS
      PapD_C   2 kNptPYyvtfsslevkgggkslalea...gmvaPfssatf....akkaapaagatvsftvINDyGgi 61 
                 +N + Y++t  +++v+ ggk +++     +++aPfss+++    ++++++a++  v++t+ +D G+ 
  EHU02119.1 171 TNRSGYFFTPGKMTVRAGGKGYTVYLdgdKTLAPFSSKEYplmgNASPSAASQILVDYTALDDEGNP 237
                 7********************99977899*************88788888888889*********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1859.30
//
Query:       EHU02120.1  [L=333]
Description: zinc-containing alcohol dehydrogenase/quinone oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-20   72.2   0.0    1.3e-19   71.6   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
      5e-11   42.7   0.0    7.7e-11   42.1   0.0    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    4.6e-08   32.9   0.0    8.7e-08   32.0   0.0    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.037   14.3   0.0      0.085   13.1   0.0    1.7  1  TrkA_N        TrkA-N domain
        0.4   10.7   1.7        1.7    8.7   0.3    2.8  3  YAcAr         YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   3.6e-23   1.3e-19       2     132 ..     192     330 ..     191     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.6e-23
                   T-SEEEETTSTTHH.HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.......-HHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe.aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas......aqadil 90 
                   GAd vi+y++  +e ++ g ++vD+++++ +++ + +++++ l +++G++++i +      l++ ++k k++s+++ef+ +++++      +q +il
    EHU02120.1 192 GADLVINYKDMPAElEKHGIKQVDYIFCLNDTDGH-WETMSQLiAPQGHICTIVE--NEHPLSMDQLKLKSASLHFEFMYTRSMFttpdmaQQGEIL 285
                   9********9999987777899*********8888.77776666999*******6..38999999999************9888899****99999* PP

                   HHHHHHHHHHH----EEEE.EE..GGGHHHHHHHHHSS--SSEEE CS
  ADH_zinc_N_2  91 eelaalieeGklrpvvdrv.fp..leeaaeAhrylesgrarGKiV 132
                   + +a+l+++Gkl+++++++  +   e +  Ah+++ +g++rGK+V
    EHU02120.1 286 NSVARLLDDGKLQTTLSETlHGlsVETLEAAHQRVLEGHMRGKVV 330
                   ******************966533566*****************9 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   2.2e-14   7.7e-11       1     118 [.     158     270 ..     158     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.2e-14
                 HHHHHHHHHHH.HTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAk.alGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefd 98 
                 gvG++a+ lAk  ++a+via++s e+ ++ +++ Gad viny + d+ ++++++   ++vd++f    +   +e+  +l++p+G + ++   ++e +++
  EHU02120.1 158 GVGSLAIPLAKmRSKAKVIATASREDSAQWCRDRGADLVINY-K-DMPAELEKHG-IKQVDYIFCLNDTDGHWETMSQLIAPQGHICTIV--ENEHPLS 251
                 9**********88899**************************.6.7*******99.78******8888999*************998876..7888899 PP

                 HHHHHHTT-EEEEE-SSCHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslr 118
                 + +l lk+ s+   ++++ r
  EHU02120.1 252 MDQLKLKSASLHFEFMYT-R 270
                 999999999998777777.4 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.4e-11   8.7e-08       3      62 ..      30      89 ..      28     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.4e-11
                EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE- CS
       ADH_N  3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvve 62
                +++++vkaa+++  D ++ kg  +   + p ilG +++G+v e+g++v+++k Gd+V   
  EHU02120.1 30 DLRVQVKAASVNPVDTKVHKGAIKNGLQVPRILGWDASGVVLETGSKVTGFKPGDEVYYA 89
                5789*****************99999*******************************865 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.4e-05     0.085       2      73 ..     152     224 ..     151     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
                 EEES-SHHHHHHHHHHHHTT.EEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH CS
      TrkA_N   2 iiiGlGrvGrslaeeLsegg.kdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgdd 73 
                 i+ G+G vG+  +   + ++  +v++  ++e+ ++  r++g++ v+     ++ Le+ gi+++d++ ++ + d
  EHU02120.1 152 IVGGAGGVGSLAIPLAKMRSkAKVIATASREDSAQWCRDRGADLVINYKDMPAELEKHGIKQVDYIFCLNDTD 224
                 67788999887766655543356999999999999999***9999999999999*********9999998877 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3   0.00047       1.7      14      55 ..     132     172 ..     114     183 .. 0.87
   2 ?   -1.0   0.0       0.5   1.8e+03      47      58 ..     185     196 ..     184     216 .. 0.67
   3 ?   -3.6   0.0       3.1   1.1e+04      18      28 ..     310     320 ..     306     322 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00047
       YAcAr  14 leliwatLdklhaeapidmvlvhGgakGaDrlAarWAaergv 55 
                 +e ++++Ld + a+   +  l+ Gga G+ +lA   A++r  
  EHU02120.1 132 WEGLFERLDMAAARDD-QTLLIVGGAGGVGSLAIPLAKMRSK 172
                 667899**********.7*******************99965 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.5
       YAcAr  47 arWAaergvelv 58 
                 a+W ++rg +lv
  EHU02120.1 185 AQWCRDRGADLV 196
                 578888888884 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.1
       YAcAr  18 watLdklhaea 28 
                  +tL+++h+++
  EHU02120.1 310 VETLEAAHQRV 320
                 57999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2814.04
//
Query:       EHU02121.1  [L=555]
Description: ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-58  196.9   0.0    3.1e-31  108.7   0.0    2.6  2  ABC_tran       ABC transporter
    3.9e-16   59.7   2.4    0.00015   21.7   0.0    4.3  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    2.1e-13   50.1   5.1    1.9e-11   43.9   1.0    2.5  2  ABC_tran_Xtn   ABC transporter
    2.5e-07   30.4   0.7       0.37   10.2   0.0    4.1  4  SMC_N          RecF/RecN/SMC N terminal domain
    7.2e-06   26.1   0.1      0.065   13.3   0.0    2.5  2  MMR_HSR1       50S ribosome-binding GTPase
    1.5e-05   24.6   0.9      0.024   14.4   0.1    2.4  2  AAA_29         P-loop containing region of AAA domain
    2.1e-05   25.2   8.6     0.0057   17.2   0.0    3.7  4  AAA_23         AAA domain
    0.00013   21.9   0.1      0.035   14.0   0.0    2.3  2  RsgA_GTPase    RsgA GTPase
    0.00075   19.8   0.3       0.47   10.7   0.0    3.0  2  AAA_22         AAA domain
    0.00097   19.6   6.9       0.86   10.0   3.1    3.5  2  AAA_16         AAA ATPase domain
     0.0017   18.9   1.4        2.3    8.8   0.3    3.5  2  AAA_18         AAA domain
     0.0019   18.3   0.0        1.3    9.2   0.0    2.6  2  AAA_33         AAA domain
      0.002   16.9   0.1        1.7    7.2   0.1    2.8  2  AAA_13         AAA domain
      0.002   18.3   1.1        2.8    8.2   0.0    4.1  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
     0.0023   17.5   0.4       0.41   10.2   0.0    2.7  2  AAA_27         AAA domain
     0.0031   16.5   0.2        1.4    7.8   0.0    2.3  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
  ------ inclusion threshold ------
      0.011   15.5   0.1        1.5    8.5   0.0    2.6  2  AAA_24         AAA domain
      0.013   15.1   0.3        1.2    8.7   0.0    2.3  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.019   15.0   0.1          1    9.4   0.0    2.7  2  Dynamin_N      Dynamin family
      0.031   13.9   0.1       0.23   11.1   0.0    2.1  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      0.034   13.9   0.2        4.3    7.0   0.0    2.6  2  AAA_30         AAA domain
      0.038   14.2   0.8        3.5    7.9   0.0    2.8  2  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.043   13.3   0.0        1.1    8.7   0.0    2.3  2  Arf            ADP-ribosylation factor family
      0.068   13.4   3.2        1.2    9.3   0.0    3.1  2  AAA_28         AAA domain
      0.076   11.8   0.1        4.9    5.9   0.0    2.1  2  DLIC           Dynein light intermediate chain (DLIC)
      0.082   12.1   1.4          2    7.5   0.0    2.8  3  NB-ARC         NB-ARC domain
      0.099   12.2   1.9         14    5.2   0.0    3.9  4  AAA_25         AAA domain
        0.1   12.6   0.0        5.7    7.0   0.0    3.0  3  AAA_14         AAA domain
       0.13   12.0   0.2        6.6    6.3   0.0    2.9  3  AAA_15         AAA ATPase domain
       0.13   11.9   0.5       0.24   11.1   0.5    1.4  1  HAUS4          HAUS augmin-like complex subunit 4
        5.1    7.3  10.9        1.6    8.9   0.9    2.2  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   5.4e-34   3.1e-31       1     137 []      22     191 ..      22     191 .. 0.97
   2 !   85.6   0.0   7.3e-27   4.2e-24       2     137 .]     340     473 ..     339     473 .. 0.84

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 5.4e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 lkn+sl++ +g k++++G nGaGKStLl+++ag  k+ eGe            +++   +ig+lpqepql+ e+tvre+                    
  EHU02121.1  22 LKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-----------RPQPGIKIGYLPQEPQLNLEHTVRESveealsevvgalkrldevya 109
                 79***************************************9...........99******************************************** PP

                 .............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                              + + ++e+a++ l+l++++++++     +LSgG+++rval+r+ll+kp++lllDEpt+
  EHU02121.1 110 lyaeedadfdklaaeqgrleeiiqahdghNLNTQLERAADALRLPDWDAKIA-----NLSGGERRRVALCRLLLEKPDMLLLDEPTN 191
                 **************99999999999999999999************888886.....*****************************8 PP

  == domain 2  score: 85.6 bits;  conditional E-value: 7.3e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS.--S-TTSBHHHHHHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe.pqlfpeltvrenesdeeiekalsklglke 96 
                 +++s+++ +g +v+i+G+nGaGKStL+++++g+++p++Gei + g+ +k    ++ + +  + +++ +e +  ++ ++++++e+ ++++  + +++ ++
  EHU02121.1 340 DDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGEI-VLGETVKLasvDQFRDSMDNAKTVWEEvSGGQDIMRIGNTEMPSRAYVGRFNFKGVD 437
                 899**************************************.5555555545655555555566666663666666668888999*9*99999999999 PP

                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  + ++v     +LSgG++ r+ la++l    ++lllDEpt+
  EHU02121.1 438 -QGKRV----GELSGGERGRLHLAKLLQVGGNMLLLDEPTN 473
                 .77777....9*****************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.1e-05     0.029       4      30 ..      37      60 ..      35      89 .. 0.79
   2 !   21.7   0.0   2.7e-07   0.00015     234     303 .]     160     223 ..     145     223 .. 0.87
   3 !   17.2   0.1   5.9e-06    0.0034       2      21 ..     352     371 ..     351     397 .. 0.86
   4 ?    3.4   0.1     0.094        55     259     278 ..     464     483 ..     387     490 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.1e-05
      AAA_21  4 liGpNgsGKSnLLdaldllarldrdve 30
                + G Ng+GKS+LL+++ ++   d+d+e
  EHU02121.1 37 VLGLNGAGKSTLLRIMAGI---DKDIE 60
                789*************988...44443 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.7e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 +++lS G +r  al  +ll+ +   + ll+DEp n+L+ + ++ l ++l + +     v++ TH+ ++ld
  EHU02121.1 160 IANLSGGERRRVALCRLLLEKP---DMLLLDEPTNHLDAESVAWLERFLHDFEG---TVVAITHDRYFLD 223
                 5678999999977777777766...**************999999999988877...9*******98886 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 5.9e-06
      AAA_21   2 nvliGpNgsGKSnLLdaldl 21 
                  ++iGpNg+GKS+L++ +++
  EHU02121.1 352 VGIIGPNGAGKSTLFRMMSG 371
                 68*************98754 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.094
      AAA_21 259 sllliDEpEngLHPkllrrl 278
                   ll+DEp n L+ + lr l
  EHU02121.1 464 NMLLLDEPTNDLDIETLRAL 483
                 78***********9999876 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   1.0   3.2e-14   1.9e-11       1      78 [.     230     305 ..     230     312 .. 0.90
   2 !    7.4   0.2    0.0077       4.4       4      25 ..     516     537 ..     515     547 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 3.2e-14
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpee 78 
                   +el++g+   ++GnYs++le+k++rl+q++++++++ k i+k+ e++++  +   ++++ ++r  ++e l++ + +++
    EHU02121.1 230 LELDRGEGIPWEGNYSSWLEQKDARLAQEASTEAARRKSIEKELEWVRKGPK--GQQSKGKARLARFEELNNTDYQKR 305
                   69*************************************************9..77888999*99*999988877744 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0077
  ABC_tran_Xtn   4 engklteYkGnYseyleekeer 25 
                   ++gk++ ++Gn++ey e k++ 
    EHU02121.1 516 DEGKIEFFEGNFTEYEEYKKRT 537
                   679**************99976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.033        19      27      41 ..      35      49 ..      19      54 .. 0.73
   2 !    8.8   0.0    0.0017         1     126     202 ..     152     222 ..      81     229 .. 0.74
   3 !   10.2   0.0   0.00065      0.37      25      42 ..     350     367 ..     322     372 .. 0.71
   4 ?    1.9   0.0      0.22   1.3e+02     136     199 ..     444     501 ..     379     519 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.033
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                  ++G NG+GKs ll
  EHU02121.1 35 IGVLGLNGAGKSTLL 49
                4599********987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0017
                 HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                  l++ + ++ +LSgGe+  val  l+     ++  + llDe   +LD++ v+ + ++l+  +    ++ i++++ +l
  EHU02121.1 152 RLPDWDAKIANLSGGERRRVALCRLL----LEKPDMLLLDEPTNHLDAESVAWLERFLHDFE--GTVVAITHDRYFL 222
                 45666667779*****9877765442....44556889****************99999877..5667777776665 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00065
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                  +  i+GpNG+GKs l+ 
  EHU02121.1 350 AIVGIIGPNGAGKSTLFR 367
                 46789*********9975 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.22
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 +LSgGe+  + la l+ +       + llDe    LD +  +++ + l e       +vis+++
  EHU02121.1 444 ELSGGERGRLHLAKLLQV----GGNMLLLDEPTNDLDIETLRALENALLEFP--GCAMVISHDR 501
                 799999987777766544....4468899**999999999999999888776..4556666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00099      0.57       1      21 [.      34      54 ..      34      73 .. 0.80
   2 !   13.3   0.0   0.00011     0.065       2      23 ..     352     373 ..     351     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00099
                EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg 21
                +++++G   +GKStL++ + g
  EHU02121.1 34 KIGVLGLNGAGKSTLLRIMAG 54
                699**************9987 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00011
                 EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgek 23 
                 v+i+G   +GKStL++ ++g++
  EHU02121.1 352 VGIIGPNGAGKSTLFRMMSGQE 373
                 89****************9973 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0033       1.9      27      39 ..      37      49 ..      24      53 .. 0.87
   2 !   14.4   0.1   4.1e-05     0.024      22      39 ..     348     366 ..     338     370 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0033
      AAA_29 27 ltGpsGsGKSTll 39
                + G +G+GKSTll
  EHU02121.1 37 VLGLNGAGKSTLL 49
                7899********8 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.1e-05
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 kg ++ ++Gp+G+GKSTl+
  EHU02121.1 348 KGaIVGIIGPNGAGKSTLF 366
                 566888***********96 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3    0.0037       2.2      24      38 ..      37      51 ..      21      55 .. 0.82
   2 ?    2.3   0.0      0.35     2e+02     114     166 ..      87     139 ..      58     165 .. 0.79
   3 ?   -1.8   0.4       6.2   3.6e+03     165     176 ..     262     283 ..     229     312 .. 0.48
   4 !   17.2   0.0   9.9e-06    0.0057      19      37 ..     349     367 ..     331     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0037
      AAA_23 24 ItGpNGaGKTTildA 38
                + G NGaGK+T+l+ 
  EHU02121.1 37 VLGLNGAGKSTLLRI 51
                6799********975 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.35
      AAA_23 114 ideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleele 166
                  +  e+ +se +g  k+  ++++++++e+++  +l++++ rlee++++ +  +
  EHU02121.1  87 RESVEEALSEVVGALKRLDEVYALYAEEDADFDKLAAEQGRLEEIIQAHDGHN 139
                 366788999999999998899********988888999999999999877654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6.2
      AAA_23 165 ledekkllekl..........e 176
                 + +++k +ek+          +
  EHU02121.1 262 EAARRKSIEKElewvrkgpkgQ 283
                 2222222222222223333220 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 9.9e-06
      AAA_23  19 kgltlItGpNGaGKTTild 37 
                   ++ I+GpNGaGK+T+++
  EHU02121.1 349 GAIVGIIGPNGAGKSTLFR 367
                 45889************97 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.025        15     104     121 ..      37      54 ..      22      66 .. 0.82
   2 !   14.0   0.0     6e-05     0.035      87     130 ..     336     380 ..     296     385 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.025
                  EECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 104 lvGqSGvGKStLinallp 121
                  ++G  G+GKStL+  +++
   EHU02121.1  37 VLGLNGAGKSTLLRIMAG 54 
                  68999********98877 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6e-05
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +  +++l+  + +  ++ ++G+ G+GKStL  ++ ++++   ge+
   EHU02121.1 336 RVLIDDLSFSVPKgAIVGIIGPNGAGKSTLFRMMSGQEQPDSGEI 380
                  445778887776658999*****************9988777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2     0.035        20      10      65 ..      37     102 ..      33     217 .. 0.61
   2 !   10.7   0.0   0.00082      0.47       8      30 ..     352     374 ..     348     428 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.035
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsstsskdllrellralg 65 
                 v G  G+GK+tllr ++  ++ +++ e            ++ +++  + ++ +s ++ l+e++ al+
  EHU02121.1  37 VLGLNGAGKSTLLRIMAGIDK-DIEGEArpqpgikigylPQEPQLNLEHTVRESVEEALSEVVGALK 102
                 66999********98887653.333333444555555554444444444444444444444444444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00082
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                 + ++G+ G+GK+tl r++  q +
  EHU02121.1 352 VGIIGPNGAGKSTLFRMMSGQEQ 374
                 569*************9998864 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   3.1    0.0015      0.86      29     161 ..      37     207 ..      32     222 .. 0.56
   2 !    7.4   0.0    0.0091       5.3      25      51 ..     350     376 ..     337     459 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
      AAA_16  29 lsGesGvGKsslvrellralekd...............................................ggiflrgkcdql....esaipysa.laqa 75 
                 + G  G GKs+l+r  +  + kd                                               ++++l+++ d       ++  ++  ++qa
  EHU02121.1  37 VLGLNGAGKSTLLRIMA-GIDKDiegearpqpgikigylpqepqlnlehtvresveealsevvgalkrldEVYALYAEEDADfdklAAEQGRLEeIIQA 134
                 78999999999997777.788885555666666655555555555555555555555555555555555434444443333322222222223335555 PP

      AAA_16  76 lareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDd.lqwadeaslqllaaLlrl 161
                  + + l +ql+++a++  l++w++k+    +          +r + +l rll      e+p  l+lD+    +d++s ++l+ +l++
  EHU02121.1 135 HDGHNLNTQLERAADALRLPDWDAKIANLSG---------GERRRVALCRLL-----LEKPDMLLLDEpTNHLDAESVAWLERFLHD 207
                 5555555555555555555555555554444.........256666666666.....244655555541557888888888777765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0091
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                  +v ++G+ G GKs+l r+   + + d
  EHU02121.1 350 AIVGIIGPNGAGKSTLFRMMSGQEQPD 376
                 57889***********99877655555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3     0.004       2.3       1      68 [.      35     139 ..      35     196 .. 0.60
   2 ?    6.7   0.0     0.017       9.9       1      18 [.     352     369 ..     352     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.004
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf......................................gvnlrdvakenglllevdpealdeskrldedkldkl 60 
                 I++ G  G+GK+tl +  +     +                                      +  l+ +     l+ e+d++   +++ +++++l+++
  EHU02121.1  35 IGVLGLNGAGKSTLLRIMAGIDkDIegearpqpgikigylpqepqlnlehtvresveealsevVGALKRLDEVYALYAEEDAD--FDKLAAEQGRLEEI 131
                 899************99944431223333444433334344444444444444444444433333344444444444444444..44444444444444 PP

      AAA_18  61 ldaleens 68 
                 ++a+++++
  EHU02121.1 132 IQAHDGHN 139
                 44444444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.017
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ G+ G+GK+tl +  
  EHU02121.1 352 VGIIGPNGAGKSTLFRMM 369
                 689**********98866 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.017        10       5      18 ..      38      51 ..      35      60 .. 0.86
   2 !    9.2   0.0    0.0022       1.3       4      25 ..     354     378 ..     351     417 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
      AAA_33  5 vGlpGsGKstlaer 18
                 Gl+G+GKstl++ 
  EHU02121.1 38 LGLNGAGKSTLLRI 51
                6**********985 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0022
      AAA_33   4 lvGlpGsGKstlaerllkklg...a 25 
                 ++G++G+GKstl + +  +++   +
  EHU02121.1 354 IIGPNGAGKSTLFRMMSGQEQpdsG 378
                 79**********9988766555554 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0029       1.7      23     112 ..      39     135 ..      36     163 .. 0.58
   2 !    6.5   0.0    0.0046       2.7      21      42 ..     354     375 ..     352     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0029
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfangsi..eitnge..eldirVfNrdFveenls...eq.gelkpvftLGeesiekqekieklkkeikkleekl 112
                 G NGaGK+tL r+++ + +    ++ +++ i   +   +  +l++    r+ vee ls   ++ ++l  v+ L +e+  +  k++ +++ ++++ +  
  EHU02121.1  39 GLNGAGKSTLLRIMAGIDKDIEGEARPQPGIkiGYLP-QepQLNLEHTVRESVEEALSevvGAlKRLDEVYALYAEEDADFDKLAAEQGRLEEIIQAH 135
                 99*************9976544444444444221111.211222222234556666654442246666666666666666666666666666665554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0046
      AAA_13  21 iYGwNGaGKTtLSrllrslelg 42 
                 i G NGaGK+tL r+++ +e+ 
  EHU02121.1 354 IIGPNGAGKSTLFRMMSGQEQP 375
                 569*************998754 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0048       2.8      26      85 ..     156     202 ..     136     207 .. 0.68
   2 ?    3.5   0.5      0.15        84      28      83 ..     440     482 ..     431     488 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0048
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatll 85 
                 +++++++lSGGe++ +a l+       l+ +      ++++++LDE  + lD+es+a l 
  EHU02121.1 156 WDAKIANLSGGERRRVA-LC------RLLLE------KPDMLLLDEPTNHLDAESVAWLE 202
                 66777788888883332.22......22333......5899***********99987665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.15
     SbcCD_C  28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 +++g+lSGGe+   ++la       l++          +++LDE  + lD e++++
  EHU02121.1 440 KRVGELSGGER-GRLHLA------KLLQV------GGNMLLLDEPTNDLDIETLRA 482
                 56777777777.222222......22222......224677777777777777666 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.04        23      31      45 ..      37      51 ..      24      56 .. 0.87
   2 !   10.2   0.0    0.0007      0.41      18      46 ..     341     369 ..     331     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.04
      AAA_27 31 iyGpNEAGKstalrA 45
                ++G N AGKst+lr 
  EHU02121.1 37 VLGLNGAGKSTLLRI 51
                79**********985 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0007
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAi 46 
                  l+fs  +  +  i+GpN AGKst++r +
  EHU02121.1 341 DLSFSVPKGAIVGIIGPNGAGKSTLFRMM 369
                 57788778888889**********99866 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0025       1.4      14      47 ..      17      50 ..       7      57 .. 0.82
   2 !    6.4   0.0    0.0066       3.8      18      49 ..     338     369 ..     326     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0025
                HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHH CS
        MeaB 14 eakellerllakaGraqvvGltGvPGaGkstlve 47
                  +++l++++ +     ++G+ G+ GaGkstl+ 
  EHU02121.1 17 PKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLR 50
                567788888888888899*************986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0066
                 HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB  18 llerllakaGraqvvGltGvPGaGkstlveal 49 
                 l++ l+ +  +   vG+ G  GaGkstl   +
  EHU02121.1 338 LIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMM 369
                 66777777788899*************98765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.044        25       3      22 ..      33      52 ..      31      64 .. 0.88
   2 ?    8.5   0.0    0.0027       1.5       3      22 ..     350     369 ..     348     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.044
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                +ki + G +g+GK+tl++ +
  EHU02121.1 33 AKIGVLGLNGAGKSTLLRIM 52
                799*************9876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0027
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 + + i+Gp+g+GK+tl +++
  EHU02121.1 350 AIVGIIGPNGAGKSTLFRMM 369
                 5688************9998 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.051        29       4      20 ..      36      52 ..      33      63 .. 0.82
   2 ?    8.7   0.0    0.0021       1.2       2      43 ..     351     393 ..     350     412 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.051
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                ++ G  G+GK+tLl+ +
  EHU02121.1 36 GVLGLNGAGKSTLLRIM 52
                678999********866 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0021
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SS.CHCCC CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNefge.vsiDa 43 
                 ++++ G+ G+GK+tL + +  +++  +  ++++e  +  s+D+
  EHU02121.1 351 IVGIIGPNGAGKSTLFRMMSGQEQPDSGEIVLGETVKlASVDQ 393
                 57899**************988888888888888776456665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.21   1.2e+02       1      21 [.      35      55 ..      35      65 .. 0.87
   2 ?    9.4   0.0    0.0017         1       1      67 [.     352     416 ..     352     488 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.21
                EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlge 21
                i v+G   +GKS++l  + g 
  EHU02121.1 35 IGVLGLNGAGKSTLLRIMAGI 55
                789999********9877775 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0017
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkekekkledfse 67 
                 + ++G   +GKS++   + g++  p + +++   +++l   ++ + s + + ++++e+ +  +d+ +
  EHU02121.1 352 VGIIGPNGAGKSTLFRMMSGQE-QPDSGEIVLGETVKLASVDQFRDS-MDNAKTVWEEVSGGQDIMR 416
                 6799******************.9*******9999**9999999966.5666667776665555555 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.84   4.9e+02      11      35 ..      29      53 ..      24      60 .. 0.83
   2 ?   11.1   0.0    0.0004      0.23       6      65 ..     341     400 ..     334     425 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.84
                 EBTT-EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 11 ivqGqrtlipgafgvGktvisqsls 35
                 +  G +++++g +g Gk+++++ ++
   EHU02121.1 29 FFPGAKIGVLGLNGAGKSTLLRIMA 53
                 56799**************987665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0004
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpe 65 
                  D+ f++ +G  ++i+g +g Gk+++ +++s q + d+  i+ g   +  +v ++ +++ +
   EHU02121.1 341 DLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGEIVLGETVKLASVDQFRDSMDN 400
                  6779999*************************9888766777766666666666666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.069        40      23      42 ..      37      56 ..      32      65 .. 0.82
   2 ?    7.0   0.0    0.0074       4.3      20      63 ..     351     395 ..     345     427 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.069
      AAA_30 23 ltGpAGtGKttalkalreaw 42
                + G  G+GK+t+l+ ++ + 
  EHU02121.1 37 VLGLNGAGKSTLLRIMAGID 56
                57999********9987765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0074
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLa 63 
                 ++ + Gp G+GK+t+ + +    + + g+ v+g + + +  ++ +
  EHU02121.1 351 IVGIIGPNGAGKSTLFRMMSGQEQPDsGEIVLGETVKLASVDQFR 395
                 77899***********99976666554655555555555555555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.12        69       1      18 [.      34      51 ..      34      75 .. 0.83
   2 ?    7.9   0.0     0.006       3.5       4      46 ..     354     396 ..     352     420 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.12
                EEEEESSTTSSHHHHHHC CS
         Roc  1 KvvlvGdsgvGKtsllkr 18
                K+ ++G +g+GK++ll+ 
  EHU02121.1 34 KIGVLGLNGAGKSTLLRI 51
                8999***********975 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.006
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGG CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikg 46 
                 ++G +g+GK++l++ +  ++  ++ +  +g +++  +v +++ 
  EHU02121.1 354 IIGPNGAGKSTLFRMMSGQEQPDSGEIVLGETVKLASVDQFRD 396
                 89***********888877777777777888887766655443 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0019       1.1      15      34 ..      33      52 ..      19      71 .. 0.82
   2 ?    2.0   0.0      0.22   1.3e+02      19      39 ..     354     374 ..     341     395 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0019
                EEEEEEESTTSSHHHHHHHH CS
         Arf 15 lrilllGLDnaGKtTilkkl 34
                ++i +lGL +aGK+T+l  +
  EHU02121.1 33 AKIGVLGLNGAGKSTLLRIM 52
                7899************9765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.22
                 EEESTTSSHHHHHHHHHHSSC CS
         Arf  19 llGLDnaGKtTilkklkleel 39 
                 ++G  +aGK+T+  +++ +e+
  EHU02121.1 354 IIGPNGAGKSTLFRMMSGQEQ 374
                 78999********99987765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4      0.15        87       2      20 ..      35      53 ..      34     143 .. 0.79
   2 ?    9.3   0.0    0.0021       1.2       4      45 ..     354     400 ..     351     417 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.15
      AAA_28  2 ivitGgestGKTtlleaLa 20
                i ++G  ++GK+tll+ +a
  EHU02121.1 35 IGVLGLNGAGKSTLLRIMA 53
                66788999*******9888 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0021
      AAA_28   4 itGgestGKTtlleaLaar.....gypvvpEaareileeklakgeda 45 
                 i+G+ ++GK+tl + ++ +     g  v+ E++     ++ ++  d+
  EHU02121.1 354 IIGPNGAGKSTLFRMMSGQeqpdsGEIVLGETVKLASVDQFRDSMDN 400
                 9***************9543466566677888877777777665555 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.039        22      26      54 ..      33      61 ..      23      71 .. 0.86
   2 ?    5.9   0.0    0.0085       4.9      22      71 ..     346     397 ..     341     406 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.039
        DLIC 26 ksvlvlGedgsGkttliaklqGveeekkG 54
                 ++ vlG +g+Gk+tl+  + G+++   G
  EHU02121.1 33 AKIGVLGLNGAGKSTLLRIMAGIDKDIEG 61
                45789******************998877 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0085
        DLIC  22 lPsgksvlvlGedgsGkttliaklqGveeekkGrGl..eylyldvkdedrdd 71 
                 +P g  v ++G +g+Gk+tl   + G e++  G  +  e + l   d+ rd 
  EHU02121.1 346 VPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGEIVlgETVKLASVDQFRDS 397
                 68888999*********************99997543456666666666665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.18   1.1e+02      23      38 ..      35      50 ..      21      61 .. 0.87
   2 ?   -1.1   0.0       1.5   8.6e+02      83     110 ..     160     187 ..     145     198 .. 0.78
   3 ?    7.5   0.0    0.0035         2      18      39 ..     347     368 ..     335     378 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.18
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                +++ G  G GK+tl++
  EHU02121.1 35 IGVLGLNGAGKSTLLR 50
                7999*********986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.5
                 SSSS-STTSHHHHHHHHCCCTTEEEEEE CS
      NB-ARC  83 leekeeveslkrklvrlLltkrfllvlD 110
                 + + + +e +   l+rlLl+k  +l+lD
  EHU02121.1 160 IANLSGGERRRVALCRLLLEKPDMLLLD 187
                 4444555558899********9999999 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0035
                 SCSEEEEEEESTTSSHHHHHHH CS
      NB-ARC  18 lqslvvalvGmgGvGKttlakq 39 
                 ++  +v++ G  G GK+tl++ 
  EHU02121.1 347 PKGAIVGIIGPNGAGKSTLFRM 368
                 55589**************975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3       0.2   1.2e+02      20      50 ..      16      49 ..       5     151 .. 0.76
   2 ?   -0.2   0.0       1.1   6.3e+02     158     188 ..     187     217 ..     182     219 .. 0.82
   3 ?    5.2   0.0     0.024        14      30      49 ..     346     365 ..     336     372 .. 0.89
   4 ?   -0.6   0.0       1.4   8.4e+02      98     147 ..     448     497 ..     417     497 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
      AAA_25 20 pprrwlvkg....llpagelallaGapgtGKttla 50
                pp+r+++k+    + p g+ + + G  g+GK+tl+
  EHU02121.1 16 PPKRHILKNislsFFP-GAKIGVLGLNGAGKSTLL 49
                6666666665554444.777778899999999997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      AAA_25 158 densnsdvgalvealeriarrtgaavllvhH 188
                 de  n+  ++ v++ler+ + +  +v+++ H
  EHU02121.1 187 DEPTNHLDAESVAWLERFLHDFEGTVVAITH 217
                 5555666678899****************99 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.024
      AAA_25  30 lpagelallaGapgtGKttl 49 
                 +p+g+++ ++G+ g+GK+tl
  EHU02121.1 346 VPKGAIVGIIGPNGAGKSTL 365
                 6999***************9 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.4
      AAA_25  98 rddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvv 147
                  +++rl++ +l +v +++ L+++ +++  + + ++ale+a+ e +g ++v+
  EHU02121.1 448 GERGRLHLAKLLQVgGNMLLLDEPTNDLDI-ETLRALENALLEFPGCAMVI 497
                 457899999999996666555544444445.56799*****9999999997 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.36   2.1e+02       6      23 ..      36      53 ..      33     109 .. 0.84
   2 ?   -1.9   0.0       5.4   3.1e+03      63      81 ..     179     197 ..     138     216 .. 0.67
   3 ?    7.0   0.0    0.0098       5.7       3      27 ..     350     374 ..     348     415 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.36
      AAA_14  6 vitGaRrvGKTtllkqli 23
                 + G+  +GK+tll+ ++
  EHU02121.1 36 GVLGLNGAGKSTLLRIMA 53
                5889999******98664 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.4
      AAA_14  63 ekktylflDEiqevpewek 81 
                 ek  +l+lDE  +  ++e+
  EHU02121.1 179 EKPDMLLLDEPTNHLDAES 197
                 3567899999888755553 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0098
      AAA_14   3 kilvitGaRrvGKTtllkqlikell 27 
                  i+ i G+  +GK+tl + +  ++ 
  EHU02121.1 350 AIVGIIGPNGAGKSTLFRMMSGQEQ 374
                 6899************887766655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.28   1.6e+02      29      43 ..      38      52 ..      22      62 .. 0.86
   2 ?    6.3   0.0     0.011       6.6      27      43 ..     353     369 ..     338     376 .. 0.85
   3 ?   -1.6   0.0         3   1.7e+03     185     230 ..     482     527 ..     442     552 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.28
      AAA_15 29 iGkNnsGKSsileal 43
                 G N++GKS++l+++
  EHU02121.1 38 LGLNGAGKSTLLRIM 52
                599*********987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
      AAA_15  27 vliGkNnsGKSsileal 43 
                  +iG+N++GKS++ +++
  EHU02121.1 353 GIIGPNGAGKSTLFRMM 369
                 59**********98775 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3
      AAA_15 185 elknvlksaiiklllisakRnvsdedsekkssllgklkekileeal 230
                  l+n l ++  +  +is +R++ d   +++ ++ ++ k +++e + 
  EHU02121.1 482 ALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKIEFFEGNF 527
                 5678888888888999999999998888888888877777777544 PP

>> HAUS4  HAUS augmin-like complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00041      0.24     172     224 ..      81     133 ..      76     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
       HAUS4 172 aalrkirekLeealeeeeaelqkaeerLrsYeilgkeFeelvreYsrlrkeie 224
                 +  +++re++eeal+e   +l++ +e+ + Y   + +F++l+ e  rl++ i+
  EHU02121.1  81 NLEHTVRESVEEALSEVVGALKRLDEVYALYAEEDADFDKLAAEQGRLEEIIQ 133
                 56799*******************************************99987 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.9    0.0028       1.6      21      68 ..      87     134 ..      82     153 .. 0.86
   2 ?    2.7   3.3      0.22   1.3e+02      55     109 ..     248     302 ..     245     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0028
  Jnk-SapK_ap_N  21 eevvkgLmPkvVkvLElLeslasrneeeeaeleelreeleqLeteyer 68 
                    +e+v++ ++ vV  L  L+++++ ++ee+a+ ++l +e  +Le+  + 
     EHU02121.1  87 RESVEEALSEVVGALKRLDEVYALYAEEDADFDKLAAEQGRLEEIIQA 134
                    589**************************************9986554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.22
  Jnk-SapK_ap_N  55 lreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele 109
                    l+++  +L +e + e++ rk  e+ele + +  ++++++ ++++++ ee n+   
     EHU02121.1 248 LEQKDARLAQEASTEAARRKSIEKELEWVRKGPKGQQSKGKARLARFEELNNTDY 302
                    5677789*****************************9999999999999876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3820.20
//
Query:       EHU02122.1  [L=254]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-42  142.9   0.0    1.8e-41  141.8   0.0    1.5  2  DeoRC         DeoR C terminal sensor domain
    1.6e-09   37.4   0.1    3.1e-09   36.4   0.1    1.5  1  HTH_DeoR      DeoR-like helix-turn-helix domain
     0.0023   17.7   1.1     0.0066   16.2   1.1    1.7  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.038   14.0   0.1      0.073   13.1   0.1    1.4  1  HTH_Mga       M protein trans-acting positive regulator (MGA)
      0.065   12.9   0.1       0.14   11.9   0.1    1.6  1  Sigma70_r4_2  Sigma-70, region 4
      0.076   13.0   0.7       0.14   12.1   0.7    1.4  1  HTH_11        HTH domain
       0.16   11.7   0.0       0.31   10.8   0.0    1.5  1  UPF0175       Uncharacterised protein family (UPF0175)


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   3.8e+03      57      74 ..      42      58 ..      33      65 .. 0.70
   2 !  141.8   0.0   6.9e-45   1.8e-41       2     160 .]      76     234 ..      75     234 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
       DeoRC 57 LsekedikvillGGevrk 74
                Lse +  +v+llGG + +
  EHU02122.1 42 LSE-PTSSVVLLGGYIVS 58
                444.58899999997755 PP

  == domain 2  score: 141.8 bits;  conditional E-value: 6.9e-45
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 na+ K+++A+aAa li ++dt+f+d+GtT  ++++a+++  + t ++  +n++ +L+ek+ + vil GGe+++++  ++    + +l+ ++ d+af++a
  EHU02122.1  76 NATRKQQLAQAAAGLIGENDTVFFDCGTTLPYVVDAIPDALPFTAICCAMNTFLALKEKPACHVILSGGEFHADNALFTPVGGQCILDDLCPDLAFISA 174
                 899***************************************************************************99999999************* PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 +g++ ++g+t+ +++e  +k++++++ar+ +l+aDssK+gk+ ++ri+al+++d l++D+
  EHU02122.1 175 AGVSHDQGATCYNLNELPMKHHAMRRARQRVLVADSSKYGKVLPARIGALSRFDLLVSDS 234
                 **********************************************************96 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.2e-12   3.1e-09       1      51 [.       8      55 ..       8      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.2e-12
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGa 51
                R+ ++   lk+ +kl++++++ ll+vSe+TiRRDL+e + +++     GG+
  EHU02122.1  8 RLRKLALALKRTDKLHLKDAARLLDVSEMTIRRDLSEPTSSVV---LLGGY 55
                77888899****************************9888888...55665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.1   2.6e-06    0.0066       5      36 ..       6      40 ..       3      40 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
      HTH_23  5 reRlrillllae...GlsvreIAreLgvsrrTvyr 36
                +eRlr l l+++   +l  +++Ar+L+vs++T++r
  EHU02122.1  6 DERLRKLALALKrtdKLHLKDAARLLDVSEMTIRR 40
                667775555554457******************98 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.8e-05     0.073      11      43 ..      12      44 ..       9      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
     HTH_Mga 11 lelLteneksltldelakeLglseltlqsdise 43
                l+l ++ ++ l+l+++a  L+ se t++ d+se
  EHU02122.1 12 LALALKRTDKLHLKDAARLLDVSEMTIRRDLSE 44
                567788999**********************97 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.4e-05      0.14      16      48 ..      11      43 ..       7      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.4e-05
                  HHHHHHHHTS---HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2 16 reifllryleglsykEIAellgisegtVksrls 48
                  + ++ l++ + l  k++A+ll++se t+++ ls
    EHU02122.1 11 KLALALKRTDKLHLKDAARLLDVSEMTIRRDLS 43
                  6689999999*******************9875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   5.6e-05      0.14       1      37 [.       8      43 ..       8      44 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIk 37
                Rl+++   L+++++ +  ++ A+ L+vS++t+rrd+ 
  EHU02122.1  8 RLRKLALALKRTDK-LHLKDAARLLDVSEMTIRRDLS 43
                56666677755555.999999**************86 PP

>> UPF0175  Uncharacterised protein family (UPF0175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.31      19      56 ..       7      44 ..       1      50 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
     UPF0175 19 elrialAvklYeegrlSlgkAaelaglsrveflelLar 56
                e ++ lA++l +  +l l  Aa+l+++s ++ ++ L++
  EHU02122.1  7 ERLRKLALALKRTDKLHLKDAARLLDVSEMTIRRDLSE 44
                445679999**********************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1973.09
//
Query:       EHU02123.1  [L=517]
Description: diaminobutyrate-pyruvate transaminase/L-2,4-diaminobutyrate decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-62  210.5   0.0    3.9e-62  210.1   0.0    1.1  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    1.1e-06   27.7   0.0    1.5e-06   27.1   0.0    1.2  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas
    3.9e-05   22.8   0.1     0.0012   17.9   0.1    2.2  1  Aminotran_5      Aminotransferase class-V
      9e-05   21.9   0.0    0.00016   21.1   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0016   17.7   0.0     0.0028   16.9   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
     0.0063   15.9   0.0       0.01   15.2   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.1   0.0   1.3e-65   3.9e-62      36     373 ..      98     436 ..      71     438 .. 0.92

  Alignments for each domain:
  == domain 1  score: 210.1 bits;  conditional E-value: 1.3e-65
                    -TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHH CS
  Pyridoxal_deC  36 twhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAartkvikemk 131
                      h+p+  + l+    l+sll++ + +a+n  + tw++s   t++e+ v+dw    +glp    +  ++g++++g++ s+l+a+l ar  +    +
     EHU02123.1  98 WFHHPKYVAHLNCPVVLPSLLAEQIMAAVNSSVDTWDQSAGGTLIEQKVIDWTLGRIGLP----AS-ADGIFTSGGTQSNLMAMLLARDSWCATHH 188
                    4588********9***************************************9999****....54.9***********************98876 PP

                    HHTTTS.HHHH...HCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHH CS
  Pyridoxal_deC 132 ekgkelkeaei...ldklvlytsdqahssvekaalvlgvk...lrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelg 221
                      +  +k++ +    +k  +  s  +h s++k  ++lg++   ++++  de++++   +le+ ie+++++Glip+ vvat Gtt  g+ d l+ ++
     EHU02123.1 189 PGH-LIKHKGLpaeAAKWRVLSSRLSHFSIQKSMAILGLGydaVISVDYDEHYRMDSVQLEREIEHCHAQGLIPIAVVATSGTTDFGSIDPLNAIA 283
                    655.34555552224788999******************9999***************************************************** PP

                    HHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TT..TTTSEECCCGSSSSS CS
  Pyridoxal_deC 222 dicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehed..sdvaadlgtkaipls 315
                    d+c++y++w+HvDAAy+ +++++   r++l+gie adS+tv  hK    ++ c+a++v+dk++l +    +a+YL+  +   + +++l +k i++ 
     EHU02123.1 284 DLCQQYGIWMHVDAAYGCGLLVSETQRQRLSGIEKADSVTVDYHKSFFQTVSCGAFFVRDKQHLSHVT-HHADYLNPLSaqQEGTPNLVNKSIQTT 378
                    ****************************************************************9988.89****954455778999********* PP

                    GHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEE CS
  Pyridoxal_deC 316 rrvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFr 373
                    rr+++lk+w+ lr +G   l +  +  + l ++ ++l++++ + e+   +el+   Fr
     EHU02123.1 379 RRFDALKMWLTLRIMGPAALGEAFDTILTLTEATHQLLKAHPSIEVLHAPELTTQIFR 436
                    ***********************************************99999988887 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.2e-10   1.5e-06     107     246 ..     210     351 ..     196     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 5.2e-10
                 EEEETCHHHHHHHCTT-EEEEE-EEECTTEEEEHHHHHHHHHHCCTCC..CEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCCCCT-HHHHH CS
     SepSecS 107 vridekSslkavelaGleialvekvlegDelitdvedveeiiekkree..vilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAYaiqsekyie 203
                  r+ + S  k++   Gl    v  v++ ++ + d  + e+ ie+ + +   ++av++t  +    s D++++ia +C++y++   v +AY+        
  EHU02123.1 210 SRLSHFSIQKSMAILGLGYDAVISVDYDEHYRMDSVQLEREIEHCHAQglIPIAVVATSGTTDFGSIDPLNAIADLCQQYGIWMHVDAAYGCGLLVSET 308
                 456677999*******************************997655442256788888888888899***********************964333333 PP

                 HHHHHHHHTTC-EECCCHCHCCCEECCHCCCCESSCHCCCCCH CS
     SepSecS 204 klkkalkvGRvdvvvksldknllvpvGgaiiaasdesfikeis 246
                 + ++   + + d v  +  k ++  v  +     d++++  + 
  EHU02123.1 309 QRQRLSGIEKADSVTVDYHKSFFQTVSCGAFFVRDKQHLSHVT 351
                 3333333334688888888888888888888888888777765 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     4e-07    0.0012     142     301 ..     263     426 ..     151     440 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4e-07
                  EEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHH......TESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEE CS
  Aminotran_5 142 lvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkkl......gvDflafsghK.llgPtGiGvlyvrkellekleplllggemve 232
                  +v  t   +  G i+p+++i++l++++g++++vDaa + g    +++++      ++D +++  hK ++     G+ +vr+  ++ l ++    ++++
   EHU02123.1 263 AVVATSGTTDFGSIDPLNAIADLCQQYGIWMHVDAAYGCGLLVSETQRQrlsgieKADSVTVDYHKsFFQTVSCGAFFVRD--KQHLSHVTHHADYLN 358
                  57778888999*************************988877666666522333345777777777777777777777777..677777777777777 PP

                  EEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES CS
  Aminotran_5 233 evsl.eettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlyg 301
                    s  +e t +     ++  T+  +++  + ++l+++    l ++     +l+e++++ lk+ p++++++
   EHU02123.1 359 PLSAqQEGTPNLVNKSIQ--TTRRFDALKMWLTLRIMGPAALGEAFDTILTLTEATHQLLKAHPSIEVLH 426
                  777744444444444455..77777777777777777777777777777777777777777777777755 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.4e-08   0.00016      50     224 ..     162     352 ..     142     423 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.4e-08
                      EEEES-HHHHHHHHH.....HHH--TTEEEEEETT................-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  50 alfvpqGtaAnsill.....killqrgeevivtep................ahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevg 122
                      ++f+  Gt++n +++     +  +  +++ +++++                +h+  +   ai  l+   ++ ++ +e   md  +le+ i++  
       EHU02123.1 162 GIFTSGGTQSNLMAMllardSWCATHHPGHLIKHKglpaeaakwrvlssrlSHFSIQKSMAILGLGYDAVISVDYDEHYRMDSVQLEREIEHCH 255
                      6888888988888775555422224444444444456666666666666667777777777777766667888888889************955 PP

                      T.TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH.TTSSEEEEESSSTT--SS-.EEEEE-HH CS
  Beta_elim_lyase 123 a.heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf.syvDsvtmslkKdllanvG.gvlafrdd 213
                      a    +i+++ +  T+        s++ l+++a+++++ygi +h+D+A  +   +s  +  +    + +Dsvt+   K  +  v  g  ++rd+
       EHU02123.1 256 AqGLIPIAVVATSGTTD-----FGSIDPLNAIADLCQQYGIWMHVDAAYGCGLLVSETQRQRLSGiEKADSVTVDYHKSFFQTVScGAFFVRDK 344
                      52233445555555555.....679999********************8777775544444433247888888888888877766444444554 PP

                      ....HHHHHHH CS
  Beta_elim_lyase 214 eledylaerve 224
                         + l++ ++
       EHU02123.1 345 ---QHLSHVTH 352
                      ...24444333 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.2e-07    0.0028      93     198 ..     204     307 ..     141     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.2e-07
                    T-EEEEEESS-THHHHHHHHTTSE...EEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEE CS
  Aminotran_1_2  93 gdeilvpdptyasyknilrlsgge...vvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllf 185
                    + ++l++++++ s+++   + g+    v+++ ++  e +++d  +le+ ++ ++++   +  ++ +s     G++ +l+ + +l   +++y+++  
     EHU02123.1 204 KWRVLSSRLSHFSIQKSMAILGLGydaVISVDYD--EHYRMDSVQLEREIEHCHAQGLIPIAVVATSGTTDFGSIDPLNAIADL---CQQYGIWMH 294
                    5578899999999999888888755347777766..*********************977777777777777777777777777...********* PP

                    EEETTTTCBSSSS CS
  Aminotran_1_2 186 vDeaYagfvfgsl 198
                    vD aY+ + + s+
     EHU02123.1 295 VDAAYGCGLLVSE 307
                    *****98876654 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.4e-06      0.01      79     194 ..     222     350 ..     207     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.4e-06
                      HHHHTT-EEEE.E-B-TTTSSB-GGGCGGG--TTE......EEEEEB-G...GGB---HHHHHHHHHHCT-EEEEE-TT-TT...-EETTEECC CS
  DegT_DnrJ_EryC1  79 avlelgakpvf.vDvdpdtynidpaaieaaitert......kaIlpVhl...yGqvadmdalkaiaakhglkvieDaAhAlG...atykgkkvG 159
                      a+l lg+++v  vD d + y +d  ++e+ i+          a+++      +G +  ++a+ ++++++g+++  DaA + G   ++ + +++ 
       EHU02123.1 222 AILGLGYDAVIsVDYD-EHYRMDSVQLEREIEHCHaqglipIAVVATSGttdFGSIDPLNAIADLCQQYGIWMHVDAAYGCGllvSETQRQRLS 314
                      7888898877548988.8899999999999999887666553333332222267788999**********************666677779*** PP

                      CSSSEEEEE-BTTSSS.-SSS-EEEEESTHHHHHHH CS
  DegT_DnrJ_EryC1 160 algdaavfSFyptKnl.ttGeGGavvtndeelaeka 194
                       +++a ++     K +  t   Ga++ +d++  +++
       EHU02123.1 315 GIEKADSVTVDYHKSFfQTVSCGAFFVRDKQHLSHV 350
                      ******999999999999999999999998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3905.59
//
Query:       EHU02124.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU02124.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU02124.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU02124.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU02124.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU02124.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU02124.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU02124.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU02124.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU02124.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU02124.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU02124.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU02124.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU02124.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU02124.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU02124.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU02124.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU02124.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2231.03
//
Query:       EHU02125.1  [L=673]
Description: 2,4-dienoyl-CoA reductase, NADH and FMN-linked [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-86  288.6   0.0    8.9e-86  288.2   0.0    1.1  1  Oxidored_FMN    NADH:flavin oxidoreductase / NADH oxidase fam
    3.1e-20   72.6   0.0    1.9e-19   70.0   0.0    2.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.9e-10   38.8   0.1    9.5e-09   35.4   0.1    2.6  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.3e-08   34.5   0.2    0.00045   19.6   0.0    2.4  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.9e-08   33.7   0.3    0.00022   21.7   0.1    3.1  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.8e-07   29.2   5.1    4.2e-05   23.3   0.2    3.7  4  DAO             FAD dependent oxidoreductase
    1.2e-06   27.6   0.3    1.2e-06   27.6   0.3    1.9  2  HI0933_like     HI0933-like protein
    4.7e-06   25.9   0.5    1.2e-05   24.6   0.5    1.7  1  FAD_binding_2   FAD binding domain
    6.4e-06   25.8   1.2    1.2e-05   24.9   1.2    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
     0.0007   18.8   0.7     0.0013   17.9   0.7    1.4  1  GIDA            Glucose inhibited division protein A
     0.0015   18.4   0.2      0.028   14.3   0.1    2.2  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0019   17.8   2.8     0.0061   16.1   0.3    2.8  2  MR_MLE_C        Enolase C-terminal domain-like
     0.0037   17.3   0.2       0.12   12.3   0.0    2.9  3  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.012   15.0   0.1       0.02   14.2   0.1    1.3  1  Amino_oxidase   Flavin containing amine oxidoreductase
      0.018   14.3   0.6       0.84    8.8   0.0    2.2  2  FAD_binding_3   FAD binding domain
      0.018   14.3   0.1        0.7    9.1   0.0    2.3  2  Thi4            Thi4 family
      0.052   14.4   0.2         66    4.4   0.0    3.9  4  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
       0.06   12.4   1.1      0.061   12.4   0.1    1.5  1  Lycopene_cycl   Lycopene cyclase protein
      0.071   12.5   0.1         10    5.4   0.0    2.5  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.077   12.3   0.1        1.1    8.5   0.0    2.2  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.078   13.6   0.7        4.7    7.9   0.2    3.0  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
       0.13   12.2   2.0        1.2    9.1   0.1    3.3  4  NAD_binding_9   FAD-NAD(P)-binding
       0.16   11.3   0.2       0.39   10.0   0.0    1.7  2  ThiF            ThiF family
       0.17   11.0   0.0        8.1    5.5   0.0    2.6  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.27    9.6   0.0       0.65    8.3   0.0    1.5  2  FMO-like        Flavin-binding monooxygenase-like


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.2   0.0   1.2e-88   8.9e-86       2     338 ..      11     332 ..      10     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 288.2 bits;  conditional E-value: 1.2e-88
                   CCS-EEETTEEESSSEEE---.-S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapm.trlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   LF+P+++g+++L+nR++m++m t l++ ++g  +  ++a++y +ra+ +v+li+t+++++np++ +    + +++++q   +r++t avh++g+k++
    EHU02125.1  11 LFTPLDLGFTQLRNRFLMGSMhTGLEEREDG--AA-RLAAFYGERAREGVALIVTGGVSPNPQGVTAAHGAVLHQDSQCDWHRQITAAVHQHGGKIA 104
                   9******************************..44.89*********************************************************** PP

                   EEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS.-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----ST CS
  Oxidored_FMN  98 vqlwhlGreakseyladqevdspsdpvaldaqeeesaeevy.kkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDe 193
                   +q++h+Gr++    + d    +ps   a++a+++     ++ ++el+  e++q+i +f+++A++a +Ag+DgVei+g++GYL+nqFl p++n+r D+
    EHU02125.1 105 LQILHTGRYS---FQRDLV--APS---AIQAPIN-----RFtPRELSDAEVEQTIADFAHCARLAQKAGYDGVEIMGSEGYLINQFLVPHTNQRQDR 188
                   **********...556666..555...8999977.....55589***************************************************** PP

                   TSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SS.SSSTTS-TTTTHHHCCTTHHHH CS
  Oxidored_FMN 194 ygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalv.haaeprkrgagsvrteqeknte 285
                   +gG+   R+ F+l+v +aV++a g  + ++ RlS+ d++e+g++  et   a +++  + +  ++ +g+++a++ ++a+ ++r a+ ++t+      
    EHU02125.1 189 WGGDFTGRMQFALAVTRAVRQATGDRFiIIFRLSMLDLIEQGSTLDETlrlATALERCGVTLFNTGIGWHEARIpTIATCVPRAAFAWVTR------ 279
                   ************************999999******************777677777777778999********99***************...... PP

                   HHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCC CS
  Oxidored_FMN 286 fvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkg 338
                    +++++ +p+++++ri+++++a++ ++ g ad+v+m+R+flad+ +v+k+++g
    EHU02125.1 280 RLRQHVAVPVVATNRINHPQVAEQLLQDGCADMVSMARPFLADAAFVSKAQRG 332
                   9*************************************************987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   2.6e-22   1.9e-19       2     250 ..     381     643 ..     380     660 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 2.6e-22
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias..evvkklnqgielllgeevvkidpgkkkvklekkkegdeek 97 
                  +++v+G+GpAG+a+al++a+ g++vtl+e      +g+  ++  + g +e++e+++  ++          +l + +v i +g+ +v+           
   EHU02125.1 381 RLAVVGAGPAGMAFALQAAERGHQVTLYE-AADEIGGQFNIARQISGKEEFRETLRyfRH----------RLPAAGVVIKTGC-RVTAPL-------L 459
                  789*************************5.555679999999999999999997775443..........4443477776666.777743.......3 PP

                  EEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-........................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  Pyr_redox_2  98 iaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgk........................... 166
                   ++d+++lAtG +pr+++ipG  ++       + s  a+  +++p  +r++++G+G iG ++A +l++  +                           
   EHU02125.1 460 ADADEVILATGIKPRTPDIPGI-DHP-----KVLSYLAVLADKRPvgARVAIIGAGGIGFDTAEYLSEPPAnettgdfyrewgidqsltqrggviapa 551
                  478*******************.333.....45566677677777779*****************977644345555666666677777777777777 PP

                  ......EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE..EEESEEEE-S-EEES-HHCS..HCCT- CS
                  ......xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Pyr_redox_2 167 ......evtlveardrll.raldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee..idadlvvvavGvrpstelle..eklgl 250
                        ++ l+++ +     +l k  + + +  l+ +Gve+  g +  +id++g     +  dge+  +++d v++++G +p++el    ++ g 
   EHU02125.1 552 pqpsprQIWLLQRKPGKPgATLAKTTGWIHRSSLQSRGVEMWGGIEYLAIDDEGL---HIRRDGERllLPVDNVIICAGQEPQRELEAalRANGK 643
                  777776677****9987779999999999999*******************8886...5777777777***************999645555555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   1.3e-11   9.5e-09       1      40 [.     384     423 ..     384     444 .. 0.83
   2 ?   -0.2   0.0       1.7   1.2e+03       1      17 [.     505     521 ..     505     528 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.3e-11
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40 
                    +vGaG +G+++A  +a++g++v+l+e++d +GG+   ++ 
     EHU02125.1 384 VVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNIARQ 423
                    8********************************9876665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.7
                    EE--SHHHHHHHHHHHC CS
  NAD_binding_8   1 IvGaGlsGlvaAylLak 17 
                    I+GaG  G  +A +L++
     EHU02125.1 505 IIGAGGIGFDTAEYLSE 521
                    9********99999986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00011     0.077       2      30 ..     384     411 ..     380     420 .. 0.79
   2 !   19.6   0.0   6.3e-07   0.00045     124     183 ..     461     519 ..     454     539 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg 30 
                  ++GaGPaG+a+a+++ + g  +++  E +
   EHU02125.1 384 VVGAGPAGMAFALQAAERGH-QVTLYEAA 411
                  899*****999999999998.56666655 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 6.3e-07
  Pyr_redox_3 124 eAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkya..gqkvvViGgknSavDaAlel 183
                   A++vi+AtG   kP++++ipG + ++k+ s+   +++ +  g +v++iG++  ++D+A  l
   EHU02125.1 461 DADEVILATGI--KPRTPDIPGID-HPKVLSYLAVLADKRpvGARVAIIGAGGIGFDTAEYL 519
                  699********..**********9.78877777755554445***************99665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   3.1e-07   0.00022       1      39 [.     381     419 ..     381     456 .. 0.91
   2 !    8.8   0.0    0.0033       2.4       1      20 [.     502     521 ..     502     528 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.1e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllD 39 
                 +++vvG+G  g+ +A  +ae g++Vt+ e++d++  +++
  EHU02125.1 381 RLAVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFN 419
                 689*******************************98887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0033
                 EEEEECSSHHHHHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalae 20 
                 +v+++G+G ig + A++l+e
  EHU02125.1 502 RVAIIGAGGIGFDTAEYLSE 521
                 79***************986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   5.8e-08   4.2e-05       2      36 ..     382     417 ..     381     422 .. 0.94
   2 ?    0.2   0.0      0.62   4.4e+02     149     203 ..     434     472 ..     426     494 .. 0.69
   3 ?    4.1   0.4      0.04        29       1      20 [.     502     521 ..     502     581 .. 0.93
   4 ?   -1.0   0.0       1.4     1e+03     150     204 ..     578     630 ..     570     650 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.8e-08
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36 
                 ++++G+G +G++ A+++a+rg  Vtl+e++d++g g+
  EHU02125.1 382 LAVVGAGPAGMAFALQAAERGhqVTLYEAADEIG-GQ 417
                 69******************99**********99.75 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.62
                 HHHHHHHHHHTT-EEEESECEEE.EEEEETCEEEEEEECTEEEEEEEEEEE--GGG CS
         DAO 149 taalaraaealGveilegtevtg.leeedgkvwgverttpgendaadavVnaaGaw 203
                 ++++++++ a+Gv i +g++vt+ l         +      +   ad v++a+G+ 
  EHU02125.1 434 LRYFRHRLPAAGVVIKTGCRVTApL---------L------AD--ADEVILATGIK 472
                 5666777778889999999988733.........2......11..35577777754 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.04
                 EEEEECTSHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLar 20 
                 +v+iiG+G iG  tA +L++
  EHU02125.1 502 RVAIIGAGGIGFDTAEYLSE 521
                 59*************99976 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.4
                 HHHHHH.HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.E.EEEEEEE--GGGH CS
         DAO 150 aalara.aealGveilegtevtgleeedgkvwgverttpgen.d.aadavVnaaGaws 204
                  ++ r  ++++Gve+  g e  ++++e   + ++ r  +ge+    +d v+++aG   
  EHU02125.1 578 GWIHRSsLQSRGVEMWGGIEYLAIDDE---GLHI-R-RDGERlLlPVDNVIICAGQEP 630
                 555555588899999999888888554...4455.2.226554257899999999654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.3   1.6e-09   1.2e-06       2      42 ..     381     421 ..     380     426 .. 0.93
   2 ?   -2.3   0.1       1.9   1.3e+03       2      19 ..     502     519 ..     501     524 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.6e-09
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHC CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilis 42 
                  +++v+G+G+AG+  A++aa+rg++V+l+e+a+++g  + i+
   EHU02125.1 381 RLAVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNIA 421
                  579********************************988875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.9
                  SEEEE--SHHHHHHHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisa 19 
                  +v++iG+G  G+ +A+ +
   EHU02125.1 502 RVAIIGAGGIGFDTAEYL 519
                  699******999888766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.5   1.7e-08   1.2e-05       3      41 ..     383     421 ..     381     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.7e-08
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41 
                     V+G+G AG+a Al+aae+G++v++ e ++e gg+  ++
     EHU02125.1 383 AVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNIA 421
                    7********************************987655 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   1.2   1.6e-08   1.2e-05       3      38 ..     383     418 ..     382     426 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.6e-08
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38 
                    VvG+gpaG+a A++Aa++G +v L e  + +GG++
    EHU02125.1 383 AVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQF 418
                   7*********************************96 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   1.8e-06    0.0013       3      36 ..     383     415 ..     381     426 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.8e-06
                 EEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithkldtia 36 
                  V+G+G AG++ Al+aa++G++v+L+ +  d+i+
  EHU02125.1 383 AVVGAGPAGMAFALQAAERGHQVTLY-EAADEIG 415
                 7************************9.6666655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   3.9e-05     0.028       2      33 ..     382     413 ..     381     432 .. 0.91
   2 ?    1.7   0.0      0.29   2.1e+02       2      18 ..     503     519 ..     502     523 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.9e-05
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdisee 33 
                 +av+GaG  G   a ++a++g++V+l++ ++e
  EHU02125.1 382 LAVVGAGPAGMAFALQAAERGHQVTLYEAADE 413
                 69*************************99876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.29
                 EEEE--SCCHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavf 18 
                 va+iGaG +G   a+ +
  EHU02125.1 503 VAIIGAGGIGFDTAEYL 519
                 9*********9999865 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   8.5e-06    0.0061      25     126 ..     192     314 ..     148     317 .. 0.75
   2 ?   -1.3   0.1       1.9   1.4e+03      36      69 ..     636     669 ..     627     672 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.5e-06
                 S...HHHHHHHHHHHHHHHHTTTSTSEE.....EEE.-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHH...............HH.S CS
    MR_MLE_C  25 d...dvaedvervravreavgpgddvdl.....mvD.anqawdlatAirvareleeldllwlEEPvppeddleglaelra...............ra.s 98 
                 d   +++  ++++ravr+a+g+  ++ +     m+D   q+ +l++ +r+a +le ++++++   + + +  + + +++                ++  
  EHU02125.1 192 DftgRMQFALAVTRAVRQATGD--RFIIifrlsMLDlIEQGSTLDETLRLATALERCGVTLFNTGIGW-H-EARIPTIATcvpraafawvtrrlrQHvA 286
                 255567888999********55..55554455678855778999999*****9977888888888888.4.3445555555556666666668855599 PP

                 SEEEESTTSSSHHHHHHHHHHTSESEEE CS
    MR_MLE_C  99 ipiaagEslysradfrelleagavdivq 126
                 +p++a  ++  ++ +++ll++g++d+v 
  EHU02125.1 287 VPVVATNRINHPQVAEQLLQDGCADMVS 314
                 *************************996 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
                 HHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHH CS
    MR_MLE_C  36 avreavgpgddvdlmvDanqawdlatAirvarel 69 
                 a+ +a g++++v    D+ q +d+++Ai  a +l
  EHU02125.1 636 AALRANGKPVQVIGGADVAQELDARRAIAQATAL 669
                 3333444444444445666666666666555555 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00017      0.12       2      42 ..     382     422 ..     381     444 .. 0.83
   2 ?   -0.7   0.0       1.7   1.2e+03       2      20 ..     503     521 ..     502     538 .. 0.87
   3 ?    0.8   0.0      0.61   4.4e+02     125     143 ..     641     661 ..     628     671 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHS CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineeh 42 
                      av+GaG  G a+A   ae+gh+v+l+   +e   ++n ++
      EHU02125.1 382 LAVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNIAR 422
                     59*************************99996666655554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.7
                     EEEE--SHHHHHHHHHHHT CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlae 20 
                     +a++GaG  G   A  l+e
      EHU02125.1 503 VAIIGAGGIGFDTAEYLSE 521
                     9********9999888876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.61
                     --..EEEEESS--HHHHHTT- CS
  NAD_Gly3P_dh_N 125 ek..vavlsGpslAeEvakgk 143
                     +   v v+ G+ +A+E+ ++ 
      EHU02125.1 641 NGkpVQVIGGADVAQELDARR 661
                     333499**********95544 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.8e-05      0.02       2      28 ..     390     416 ..     389     422 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
                    HHHHHHHHHHHTTEEEEEEESSSSSBT CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGG 28 
                    aG+a A q +++G++Vt++Ea d +GG
     EHU02125.1 390 AGMAFALQAAERGHQVTLYEAADEIGG 416
                    9************************** PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0012      0.84       5      32 ..     383     410 ..     381     414 .. 0.89
   2 ?    3.5   0.1     0.047        34       3      22 ..     502     521 ..     500     522 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
                    EEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvek 32 
                    ++VGaGpaG+  al  +e+G +v+l e 
     EHU02125.1 383 AVVGAGPAGMAFALQAAERGHQVTLYEA 410
                    69*******************9998775 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.047
                    EEEEE--SHHHHHHHHHHHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLse 22 
                     V+I+GaG  G+ +a  Lse
     EHU02125.1 502 RVAIIGAGGIGFDTAEYLSE 521
                    69**************9986 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00098       0.7      19      56 ..     381     417 ..     364     427 .. 0.87
   2 ?    2.7   0.0     0.088        63      19      40 ..     502     523 ..     495     528 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00098
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGG 56 
                  +++vGaG++G++ a   a++ + +v++ e+   +GG 
  EHU02125.1 381 RLAVVGAGPAGMAFALQAAER-GHQVTLYEAADEIGGQ 417
                 578*****************9.********99999985 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.088
                 EEEEE--SHHHHHHHHHHHHCT CS
        Thi4  19 DvvivGaGssGLtaayylakkp 40 
                  v+i+GaG  G  +a yl++ p
  EHU02125.1 502 RVAIIGAGGIGFDTAEYLSEPP 523
                 699***************9876 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.51   3.7e+02      63      89 ..     285     313 ..     266     331 .. 0.79
   2 ?    2.2   0.0      0.43   3.1e+02       2      53 ..     381     432 ..     380     453 .. 0.71
   3 ?    4.4   0.0     0.092        66       2      24 ..     502     524 ..     501     543 .. 0.84
   4 ?   -0.6   0.0       3.3   2.3e+03      63      89 ..     619     645 ..     569     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.51
                   ESEEEE-S-GGGHHHHHHHHHHTT-..EE CS
  GFO_IDH_MocA  63 idavivatpngtheelakaaleagk..hv 89 
                   + + +vat    h ++a+++l+ g+   v
    EHU02125.1 285 VAVPVVATNRINHPQVAEQLLQDGCadMV 313
                   566688888899***********995444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.43
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESS CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysd 53 
                   r a++GaG +g  ++ +  e+ ++  +  + d+   +   +++  g e + +
    EHU02125.1 381 RLAVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNIARQISGKEEFRE 432
                   789*********9997777777777777777777666666666555555555 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.092
                   EEEEETTSHHHHHHHHHHHHTTT CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqr 24 
                   rvaiiGaG ig + ++ l e+  
    EHU02125.1 502 RVAIIGAGGIGFDTAEYLSEPPA 524
                   89********9999888777644 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 3.3
                   ESEEEE-S-GGGHHHHHHHHHHTT-EE CS
  GFO_IDH_MocA  63 idavivatpngtheelakaaleagkhv 89 
                   +d vi++   + ++el+ a+ ++gk v
    EHU02125.1 619 VDNVIICAGQEPQRELEAALRANGKPV 645
                   899999999999****99999999965 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.5e-05     0.061       2      36 ..     382     414 ..     381     420 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    ++v+GaGpAg++ A +   a+ g +v+l ea++++
     EHU02125.1 382 LAVVGAGPAGMAFALQA--AERGHQVTLYEAADEI 414
                    68***************..99********999876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.032        23      37      68 ..     380     411 ..     369     434 .. 0.89
   2 ?    5.4   0.0     0.015        10      35      56 ..     499     520 ..     491     529 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.032
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrs 68 
                   k+++++G+G  G a+a  +++ g +v+ y+  
    EHU02125.1 380 KRLAVVGAGPAGMAFALQAAERGHQVTLYEAA 411
                   899************************99876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.015
                   TTSEEEEES-SHHHHHHHHHHH CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlk 56 
                    g +v+iiG+G IG  +a++l+
    EHU02125.1 499 VGARVAIIGAGGIGFDTAEYLS 520
                   5889*************99886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0015       1.1      27      96 ..     378     448 ..     362     465 .. 0.76
   2 ?    1.1   0.0      0.28     2e+02      28      45 ..     500     517 ..     484     528 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH...TTTCECEEHCHHHHHHHHHHHH-SEEE CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles...lgakfvevlksqeellaeavkeadvvi 96 
                   p +  v+G+G aG++ +  a++ g +Vt+++   +   q++    + +k  e  +++ + +++++  a vvi
   EHU02125.1 378 MPKRLAVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNIarqISGK--EEFRETLRYFRHRLPAAGVVI 448
                  567899*************************9998887777654344444..445555566666666666666 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.28
                  --EEEEESTSHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAia 45 
                   a+v +iG+G  G   ++
   EHU02125.1 500 GARVAIIGAGGIGFDTAE 517
                  59********99988776 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0066       4.7       1      30 [.     381     407 ..     381     428 .. 0.90
   2 ?    2.7   0.0      0.27   1.9e+02       1      17 [.     502     518 ..     502     525 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0066
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivv 30 
                    +++++GaG  g a+a++++++g   h++++
     EHU02125.1 381 RLAVVGAGPAGMAFALQAAERG---HQVTL 407
                    689*******************...99984 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.27
                    EEEEETTSHHHHHHHHH CS
  F420_oxidored   1 kigiiGaGnmgealasg 17 
                    +++iiGaG +g+  a+ 
     EHU02125.1 502 RVAIIGAGGIGFDTAEY 518
                    69*********977765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0016       1.2       1      39 [.     383     416 ..     383     426 .. 0.80
   2 ?   -0.7   0.0       1.7   1.2e+03     145     154 ..     461     470 ..     450     472 .. 0.87
   3 ?   -1.0   0.0       2.2   1.6e+03       1      18 [.     504     521 ..     504     529 .. 0.85
   4 ?   -2.0   0.0       4.4   3.2e+03     135     155 ..     607     628 ..     597     629 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0016
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgag 39 
                    a+vGaGp+G+a++ + ++r      +++tl++  +e+g g
     EHU02125.1 383 AVVGAGPAGMAFALQAAER-----GHQVTLYEAaDEIG-G 416
                    89**********9998888.....58999999955555.4 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.7
  NAD_binding_9 145 aadaVvLAlG 154
                    +ad+V+LA+G
     EHU02125.1 461 DADEVILATG 470
                    79*******9 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.2
  NAD_binding_9   1 aivGaGprGlavlerLla 18 
                    ai+GaG  G  ++e L +
     EHU02125.1 504 AIIGAGGIGFDTAEYLSE 521
                    8********999999876 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4.4
  NAD_binding_9 135 avlladgas.laadaVvLAlGh 155
                    +++ ++++  l +d+V+++ G+
     EHU02125.1 607 HIRRDGERLlLPVDNVIICAGQ 628
                    444444443359*******996 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.7   2.7e+03      19      34 ..     380     395 ..     338     404 .. 0.75
   2 ?   10.0   0.0   0.00055      0.39      11      37 ..     493     519 ..     483     521 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
                 SEEEEE--SHHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsell 34 
                 ++ ++vGaG  G  ++
  EHU02125.1 380 KRLAVVGAGPAGMAFA 395
                 4667777777776666 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00055
                 HHHHHHHTSEEEEE--SHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrdskvllvGaGglGsellknL 37 
                   +++   ++v+++GaGg+G   +++L
  EHU02125.1 493 LADKRPVGARVAIIGAGGIGFDTAEYL 519
                 56889999************9999998 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.8   5.6e+03      30      45 ..      77      92 ..      70      95 .. 0.81
   2 ?    2.4   0.0       0.1        72     188     217 ..     376     405 ..     355     413 .. 0.63
   3 ?    5.5   0.0     0.011       8.1     148     204 ..     461     513 ..     452     528 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.8
  K_oxygenase 30 alflerqpefaWhpgm 45
                   +l + ++ +Wh+++
   EHU02125.1 77 GAVLHQDSQCDWHRQI 92
                 57899999*****986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.1
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkkv 217
                   + +kr+aVvG+G  +   + ++++r ++v
   EHU02125.1 376 AHMPKRLAVVGAGPAGMAFALQAAERGHQV 405
                  456667777777766666666666665543 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.011
  K_oxygenase 148 earnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaa 204
                   a +++l++G +p  P++   ++ +++v+    +l +k  +  + r+a++G+G  + 
   EHU02125.1 461 DADEVILATGIKPRTPDIPG-ID-HPKVLSYLAVLADK--RPVGARVAIIGAGGIGF 513
                  5889*************877.56.58999999999988..78899*******96655 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00091      0.65       2      42 ..     380     420 ..     379     430 .. 0.91
   2 ?   -2.7   0.0       2.1   1.5e+03     183     203 ..     500     520 ..     470     524 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00091
    FMO-like   2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwrf 42 
                 k++av+GaG +G+a      e g + t +e +d+iGG ++ 
  EHU02125.1 380 KRLAVVGAGPAGMAFALQAAERGHQVTLYEAADEIGGQFNI 420
                 99************9999*******************8876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
    FMO-like 183 gkrvlviGlGnsggdiavels 203
                 g rv +iG G  g d a  ls
  EHU02125.1 500 GARVAIIGAGGIGFDTAEYLS 520
                 567777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 4686.14
//
Query:       EHU02126.1  [L=372]
Description: methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-57  191.8   0.0      1e-56  191.1   0.0    1.4  1  MTS              Methyltransferase small domain
    3.6e-08   34.0   0.0    8.2e-08   32.9   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      6e-07   30.1   0.0    2.9e-06   28.0   0.0    2.1  3  Methyltransf_12  Methyltransferase domain
    2.6e-06   27.3   0.0    8.8e-06   25.6   0.0    1.8  2  Methyltransf_31  Methyltransferase domain
    0.00014   21.4   0.0    0.00027   20.5   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00096   18.8   0.0     0.0022   17.7   0.0    1.5  2  Cons_hypoth95    Conserved hypothetical protein 95
     0.0011   19.5   0.0     0.0026   18.4   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
     0.0039   17.0   0.0      0.012   15.4   0.0    1.8  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.072   13.0   0.0       0.18   11.7   0.0    1.6  2  Methyltransf_18  Methyltransferase domain
       0.15   11.9   0.0       0.27   11.1   0.0    1.6  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.0   5.8e-60     1e-56       2     169 .]     196     367 ..     195     367 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 5.8e-60
                 EEEEEETTSTTTTS--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTTSTTS CS
         MTS   2 ltlktlpgvFskdklDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdvleeveek 96 
                 ++++++++vFs+ +lD+G++l++++lp++++g+++DlGcG+Gv+g+++++++peaev+++d++++A++s++ n+e n+ +    ++++ ++vl+  + +
  EHU02126.1 196 YQIHNHANVFSRSSLDIGARLFMQHLPENIEGEIVDLGCGNGVIGLMALAQNPEAEVHFLDESYMAVASSRLNVEINRPDdlsrCQFRVNNVLSGYPSD 294
                 689***************************************************************************999999*************** PP

                 -EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSEEEEE CS
         MTS  97 kfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkfkvlk 169
                  + ++++NPPfh+++a+++++a++++++Ak++L+ gGeL+iV nr+l+y+++l++lfgn+++va++ kf+vl+
  EHU02126.1 295 TLHAVLCNPPFHQQHAVTDHLAWQMFRDAKRCLQYGGELRIVGNRHLDYHHKLKKLFGNCTLVASNTKFVVLR 367
                 ***********************************************************************95 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.6e-11   8.2e-08       1      97 []     229     331 ..     229     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.6e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT....TEEEEESBCCGBSSSTTTEEEEEEEST.GG..G.SSHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl....nvefvqgdaedlpfedgsfDlvvssga.lh..h.lsdedlekal 86 
                      ++dlGcG+G + l+++++ ++a+v+ +D s  +++  r ++e +++    +++f++ ++ +  +++++ ++v+++   +h  h ++d+ + +++
       EHU02126.1 229 IVDLGCGNGVIGLMALAQNPEAEVHFLDESYMAVASSRLNVEINRPddlsRCQFRVNNVLSG-YPSDTLHAVLCN-PpFHqqHaVTDHLAWQMF 320
                      89*******998877777579*****************999998888889999999999774.46779******5.4477554588888999** PP

                      HHHHHHEEEEE CS
  Methyltransf_25  87 keiarvLkpgG 97 
                      + ++r+L+ gG
       EHU02126.1 321 RDAKRCLQYGG 331
                      ********999 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.8   6.8e+03      78      96 ..     114     132 ..      72     135 .. 0.59
   2 ?   -2.0   0.0       3.5   6.3e+03      10      42 ..     175     207 ..     172     216 .. 0.75
   3 !   28.0   0.0   1.6e-09   2.9e-06       1      98 [.     230     332 ..     230     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.8
  Methyltransf_12  78 hlkdirevldnirklLkpg 96 
                       l+ +++ l+ +r++++p+
       EHU02126.1 114 TLALLEQQLRAVRQVITPE 132
                      4455566777777777776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
  Methyltransf_12  10 llralleklpdieytgvDispsaiedakeklak 42 
                      ++++ l++ +++++  +D  p +i+++++ +++
       EHU02126.1 175 FTQPALREKSPTQVWSLDGTPYQIHNHANVFSR 207
                      667777777889999999999999777776665 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 1.6e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl....kdir.evldni 89 
                      +++GcG+G +  + l+++p++e++++D s  a++  +     +++++ ++++++++++l+  ++++  +v+++  +h      ++++ ++++ +
       EHU02126.1 230 VDLGCGNGVIGLMALAQNPEAEVHFLDESYMAVASSRLNVEINRPDDLSRCQFRVNNVLSGYPSDTLHAVLCNPPFHQQhavtDHLAwQMFRDA 323
                      59**********************************************************9999999999999666544446766666888888 PP

  Methyltransf_12  90 rklLkpgGr 98 
                      +++L  gG 
       EHU02126.1 324 KRCLQYGGE 332
                      888888876 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   1.8e+03      86     110 ..     114     138 ..      86     175 .. 0.75
   2 !   25.6   0.0   4.9e-09   8.8e-06       6     109 ..     228     335 ..     224     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
  Methyltransf_31  86 aladpdkileeiervlkpggillie 110
                      +la +++ l+ + +v++p+++++++
       EHU02126.1 114 TLALLEQQLRAVRQVITPETVIMAA 138
                      5566677778888888888888754 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 4.9e-09
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld...nveFeqgdiee.leklledekfDlilsnevl...naladpd. 91 
                      +++DlGCG+G +++ +    +p+aev+ +D s  a+ ++r n + +  d   +++F++ ++ +  +     ++   +l+n ++   +a++d   
       EHU02126.1 228 EIVDLGCGNGVIGLMAL-AQNPEAEVHFLDESYMAVASSRLNVEINRPDdlsRCQFRVNNVLSgYP----SDTLHAVLCNPPFhqqHAVTDHLa 316
                      689**********9988.78*********************8888887744477777777777666....478889999988866544444331 PP

  Methyltransf_31  92 .kileeiervlkpggilli 109
                       + ++ ++r l+ gg+l i
       EHU02126.1 317 wQMFRDAKRCLQYGGELRI 335
                      1344477777777777776 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00027     163     215 ..     227     284 ..     215     309 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
        PrmA 163 eevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelNkvea....klev 215
                  e++D+G+G G++ + a+  +  ++v+ +D   +Av +++ N+e+N+ ++    +++v
  EHU02126.1 227 GEIVDLGCGNGVIGLMALAQNpEAEVHFLDESYMAVASSRLNVEINRPDDlsrcQFRV 284
                 4899**********9887666267999*******************766632133333 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   5.8e+03      71     149 ..     119     136 ..     105     161 .. 0.50
   2 !   17.7   0.0   1.2e-06    0.0022      40     130 ..     225     312 ..     214     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
                    ES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHHTT-EEEEEEEE CS
  Cons_hypoth95  71 ekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlelleekkllkenalvv 149
                    e++ +av+                                                             ++++++++++
     EHU02126.1 119 EQQLRAVR-------------------------------------------------------------QVITPETVIM 136
                    33333332.............................................................3333333333 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.2e-06
                    HCC-EEEETT-TTSHHHHHHHHTT-S.EEEEEES-HHHHHHHHHHHCCCT--T..TTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.H CS
  Cons_hypoth95  40 iegarvLDlfaGsGalglEAlSRgak.kavlvekdkeavkilkenleelklee..etaelkedaleallklakkkeefdivflDPPyakellie 130
                    ieg+ ++Dl +G+G++gl Al  + + ++++++++  av+  + n+e  + ++  +++  +++ l+ +++       +  v  +PP+++++++ 
     EHU02126.1 225 IEGE-IVDLGCGNGVIGLMALAQNPEaEVHFLDESYMAVASSRLNVEINRPDDlsRCQFRVNNVLSGYPSD-----TLHAVLCNPPFHQQHAVT 312
                    5555.99***************99753899****************9988776666666666666666665.....5789*********98643 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-06    0.0026       1      94 [.     230     333 ..     230     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
                      EEET-TTSHH.HHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCTSS-TT-EEEEEEES-CCC-.....CCHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrl.aealakrg.arvvgvDlskemlklakekaseegl....kvefvvadaeklpfednsfDlvvssevlhhv.....edpekalke 83 
                      +d+GcG+G + + ala++  a+v  +D s  +++ ++ +++ +++    +++f+v ++ +  +++++  +v+++  +h       +   + ++ 
       EHU02126.1 230 VDLGCGNGVIgLMALAQNPeAEVHFLDESYMAVASSRLNVEINRPddlsRCQFRVNNVLS-GYPSDTLHAVLCNPPFHQQhavtdHLAWQMFRD 322
                      59****98651666666669*******999999999999888888999999999999997.9*************99888667766889***** PP

                      HHHHEEEEEEE CS
  Methyltransf_11  84 iaRvLkpgGll 94 
                      ++R+L+ gG l
       EHU02126.1 323 AKRCLQYGGEL 333
                      *********87 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.5e-06     0.012      48      95 ..     227     275 ..     205     288 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.5e-06
  Methyltransf_16  48 lsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnkna 95 
                       ++++LG G G++Gl++ ++ pea+v   D +  ++   + n+e+n+  
       EHU02126.1 227 GEIVDLGCGNGVIGLMALAQNPEAEVHFLDESYmAVASSRLNVEINRPD 275
                      579************999999*********9984667778899998854 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.7   8.5e+03      96     127 ..     152     183 ..     150     191 .. 0.76
   2 ?   11.7   0.0    0.0001      0.18      16      81 ..     227     294 ..     216     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.7
  Methyltransf_18  96 ileILeeakeklkkikklilqpnseaeelRky 127
                        +I+ e+k++l+  k  ++ ++  +  lR+ 
       EHU02126.1 152 FEQIIGETKTSLAVKKARVIYSQFTQPALREK 183
                      56788888888888888888888888888875 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0001
  Methyltransf_18  16 srvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagled..kievrlsdGleklkee 81 
                        ++D G+  g++ ++++ ++   +v++ D +  ++++++ n+e ++ +d  ++++r+++ l+ + ++
       EHU02126.1 227 GEIVDLGCGNGVIGLMALAQNPEAEVHFLDESYMAVASSRLNVEINRPDDlsRCQFRVNNVLSGYPSD 294
                      4799**************************************99988765558999999999988544 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.27      20      62 ..     223     283 ..     182     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
  Methyltransf_23  20 lraggrvLdiGcGtG.illevlrengf.svtgvDlspeaveiae................k 62 
                      ++  g+++d+GcG G i l  l++n+  +v + D s +av+  +                 
       EHU02126.1 223 ENIEGEIVDLGCGNGvIGLMALAQNPEaEVHFLDESYMAVASSRlnveinrpddlsrcqfR 283
                      556789*********98999999997669******99999877676555555555555540 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2860.43
//
Query:       EHU02127.1  [L=167]
Description: putative metal dependent hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-14   52.0   0.2      1e-13   51.8   0.2    1.2  1  DUF45          Protein of unknown function DUF45
    1.3e-05   25.4   0.3    1.8e-05   24.9   0.3    1.3  1  WLM            WLM domain
  ------ inclusion threshold ------
       0.03   14.2   0.2       0.05   13.5   0.2    1.4  1  SprT-like      SprT-like family
      0.031   13.5   0.6      0.074   12.2   0.6    1.6  1  Peptidase_M56  BlaR1 peptidase M56


Domain annotation for each model (and alignments):
>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.2   2.3e-17     1e-13     144     200 ..      93     149 ..      32     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 2.3e-17
       DUF45 144 GscsskgkirlnwrLvkappevidYVvvHElaHlleknHskrFwalvekllPdwkea 200
                 G  ++k +ir+++   +ap+ +++ +vvHElaHl+eknH k+F++l+ ++ Pd+ ++
  EHU02127.1  93 GNLKAKAEIRISTFFRQAPEPFLRMIVVHELAHLKEKNHDKAFYQLCCHMEPDYHQL 149
                 55599*************************************************886 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.3   3.9e-09   1.8e-05      85     119 ..     117     151 ..      95     165 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.9e-09
         WLM  85 gtllHELaHnvygpHdakFyallkeLekeveelka 119
                  + +HELaH +  +Hd+ Fy+l+ ++e ++ +l+ 
  EHU02127.1 117 MIVVHELAHLKEKNHDKAFYQLCCHMEPDYHQLEF 151
                 5689**************************99976 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   1.1e-05      0.05      41      76 ..      93     127 ..      47     151 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
   SprT-like  41 atvrhhasIeLseklldsrsedrllntLaHElcHla 76 
                  + + +a+I++s+   +  +e +l+ +++HEl+Hl 
  EHU02127.1  93 GNLKAKAEIRISTFFRQA-PEPFLRMIVVHELAHLK 127
                 4567799****9988887.***************84 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   1.7e-05     0.074     125     211 ..      52     130 ..      46     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
  Peptidase_M56 125 lvlkkrfvrklgklraeelkeaLkeakeemqlkrnikirlsssidsPavlgllkprIvlPadflkklsdeeleyillHElaHlkrkD 211
                    l lk+rf+r++ ++++   ++++k +k++ +l   i+ +   ++         k  I +++ f+++  +  l +i++HElaHlk+k 
     EHU02127.1  52 LALKNRFMRNAPPINKVIWDNKIKVMKHALGLHTAISRVQGGNL-------KAKAEIRIST-FFRQAPEPFLRMIVVHELAHLKEKN 130
                    55677788888888888888888888888884444433222222.......2467788888.788999999************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1291.91
//
Query:       EHU02128.1  [L=562]
Description: putative voltage-gated ClC-type chloride channel protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-67  228.0  50.8    4.2e-67  226.9  46.9    2.1  2  Voltage_CLC  Voltage gated chloride channel
    2.9e-05   24.4   0.0        0.4   11.2   0.0    2.8  2  CBS          CBS domain


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.5   0.00079       7.1     135     191 ..      22      84 ..       4      95 .. 0.60
   2 !  226.9  46.9   4.6e-71   4.2e-67       2     352 ..      67     408 ..      66     410 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00079
                  HHHHHHHHHCTTS-S......-.T...---....--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 135 vaalvlrlllgeepa......fge...veslf.alsllelilfvllGilgGllgalfvrlllkverl 191
                  +a+lv+ l+  +  +      fg+   +   + +++l+ +++  +l  +gGll+++f r+ +++er+
   EHU02128.1  22 AASLVTLLFRETI-EfinyllFGRsndI---TeSIHLWPMLFWPVLVGVGGLLAGFFLRYAVAIERQ 84 
                  3333333332222.12334556654332...2367777778888888899********999999874 PP

  == domain 2  score: 226.9 bits;  conditional E-value: 4.6e-71
                  HHHHHHHCCCCC.-GGGSC-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHH.HHHHHHHH CS
  Voltage_CLC   2 ggllagllvklv.apeaagsGipevkaalngvkgplslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrr.lvaaGaAA 97 
                  ggllag++ ++  a e ++   +++ +++n +   +++++ l ++l++v ++gsG+s+G+eGp+vq++A++gs+++rll  +  + ++  +va++aAA
   EHU02128.1  67 GGLLAGFFLRYAvAIERQQTVKTDYLEVINARLDAVPTKTSLFRALSLVASIGSGASIGKEGPMVQLAALCGSMIGRLLP-PGVQLKNSdVVAMAAAA 163
                  78888888777624444455566788888888888*******************************************87.444446666******** PP

                  HHHHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
  Voltage_CLC  98 GiAAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgeepafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkl 195
                  G++++++aPl+ ++f+ E+  +  +l+ l+p +v+s+va +++++l   ++ +   e  f++++ +l+++vl+G+l+Gl+g l +rl  ++++lf ++
   EHU02128.1 164 GLSSVYHAPLASAIFVAEIAFGISALQRLIPLVVSSAVAVMTMWALGFRNALYPLAEVSFTMDVSSLLITVLIGLLSGLAGLLLIRLIARAKTLFSRV 261
                  *********************99999********************666666776666679***********************************99 PP

                  HCHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHH.HHHHH CS
  Voltage_CLC 196 eklkikkrlepalvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvg.lvlal 292
                     +   +l++ ++g++vgll+l+    +lg+gye i ++++g+   + l  lllll+lk+lat+l++gs++ gG+f+PsL+iGA+lG++++   +al
   EHU02128.1 262 ---RS-LPLRLGAGGFAVGLLALVSTD-ILGNGYEVIVKVMAGH---YVLSGLLLLLVLKTLATSLSVGSNAVGGLFTPSLLIGALLGMVIAlCGVAL 351
                  ...33.4799**************988.***************8...99999*************************************998444444 PP

                  H-CTSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHH CS
  Voltage_CLC 293 llpgaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkava 352
                  +lp      ++ +fa+vGmaa+la+v++apl+a+++v+E+t + +ll+p+m+a+++A++v+
   EHU02128.1 352 HLP----LnNVLLFAAVGMAAVLAAVSQAPLMAMLMVLEMTLNSSLLFPVMIASVLATMVV 408
                  444....33779**********************************************996 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   9.4e-05      0.84      12      54 ..     448     490 ..     436     493 .. 0.82
   2 !   11.2   0.0   4.5e-05       0.4       4      54 ..     505     557 ..     502     560 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.4e-05
                 EETTSBHHHHH..HHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS  12 vppdttleeal..elmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 + p+++++eal    +  k+ + ++V++ +g ++G+v+ + + r 
  EHU02128.1 448 LQPEASVGEALavSSL--KRERYVYVINAQGAFLGVVSIHEISRR 490
                 78999******76667..4457889**************999776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.5e-05
                 HSBSSCEEEETTSBHHHHHHHHHHHT..SSEEEEE..ETTTBEEEEEEHHHHHHH CS
         CBS   4 imtrdvvtvppdttleealelmrekg..vsrlPVV..dedgklvGivtlrDllra 54 
                 +m +d+++++ +++l+e  e +  ++  + rlPV+  + + +++G +t++ l+++
  EHU02128.1 505 VMDEDFPVAYQNQSLREGWEAF--AAvtLERLPVLnnPQERRFLGALTKTSLIQK 557
                 899*******************..663356*****8766668*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4013.71
//
Query:       EHU02129.1  [L=326]
Description: putative NAD(P)-binding dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-24   86.2   0.1    4.1e-24   85.7   0.1    1.2  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
  ------ inclusion threshold ------
      0.051   14.0   0.0      0.099   13.1   0.0    1.4  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   4.6e-28   4.1e-24       1     117 [.       2     118 ..       2     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 4.6e-28
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   +r+ai+G+ +i+++++++ +e+  + ++ a++++  e+a a+++ + ++  +++l++++a p+idav++a+pn +h + a+ ++ +gkhv++EKPla
    EHU02129.1   2 IRFAIVGTNWITRQFIEAAHET-GKMRLCAVYSRTREQAAAFCHDYPCDqRFTSLAAMAACPDIDAVYIASPNALHCQQAMLFMSQGKHVICEKPLA 97 
                   699*************888888.9*************************9*********************************************** PP

                   SSHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgklvs 117
                    ++ e+++++++a++ +++++
    EHU02129.1  98 SNLHEVEAMIACARQYQVVLF 118
                   ****************99876 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.099       3      94 ..       5      91 ..       3      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                    EEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEE CS
  Semialdhyde_dh  3 aivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapklaeagvkvi 94
                    aivG t  + +++++  +e  ++ l++++s++r   ++ a+ +    + +d ++++ + +++  ++d v  a p+  +++ a  ++++g +vi
      EHU02129.1  5 AIVG-TNWITRQFIEAAHETGKMRLCAVYSRTR--EQAAAFCHD---YPCDQRFTSlAAMAACPDIDAVYIASPNALHCQQAMLFMSQGKHVI 91
                    8999.99999**********************9..555555544...6799999998889999***************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2415.74
//
Query:       EHU02130.1  [L=496]
Description: altronate hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-154  514.0   0.0   2.6e-154  513.8   0.0    1.1  1  GD_AH_C   D-galactarate dehydratase / Altronate hydrolase, C 
    1.1e-06   29.2   0.4    2.4e-06   28.0   0.4    1.7  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> GD_AH_C  D-galactarate dehydratase / Altronate hydrolase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.8   0.0  2.9e-158  2.6e-154       3     392 .]     109     495 ..     107     495 .. 0.99

  Alignments for each domain:
  == domain 1  score: 513.8 bits;  conditional E-value: 2.9e-158
     GD_AH_C   3 fkGYrradgrvGtrNyvlilptvecvnkvaeaiaeavkeel.klpnvdgvvalthqygcgqlgedaelllrtLaglakhPNvagvlvlglgcenlqiee 100
                 ++ Yrra+g++G+rN+++ilptv+cvn++a++i +++ +e+ + +  dg++ ++h++gc+qlg+d+e+++++L+++++hPN+++vlv+glgcen+q+++
  EHU02130.1 109 VQLYRRANGEAGIRNELWILPTVGCVNGIARQILQRFLKETqDAAGTDGAFLFSHTFGCSQLGQDHENTRTMLQNMVRHPNAGAVLVIGLGCENNQVDA 207
                 677**********************************99998999****************************************************** PP

     GD_AH_C 101 laeeikeadekpvevltiqesgtekeieagleaveelleeankakReevplseLvvglkCGgSDgfSGitANPavGaasdllvaaGgtailsEtpEliG 199
                 ++e++++ ++++v+++++q++  ++eieagle +++l+e++++++R++ +lseL++gl+CGgSDgfSGitANP++G++sd ++a+Ggt++l+E+pE++G
  EHU02130.1 208 FRETLGAFESDRVAFMVCQQH--DDEIEAGLERLHALYEKMRHDRRTPGKLSELKFGLECGGSDGFSGITANPLLGRFSDQMIANGGTTVLTEVPEMFG 304
                 *********************..**************************************************************************** PP

     GD_AH_C 200 aehllaeRavneevaekllklikkyeeyakaegadveenpspGNkagGLttieeKSlGaiaKggtspiedVleyaervkkkGlvlldtpgndlesvtgl 298
                 ae++l+ R++++++++k++++i+++++y+ +++++++enpspGNkagG+tt+eeKSlG+++K+g+s+++dVl+y+er++ +Gl+ll++pgnd++++++l
  EHU02130.1 305 AERILMGRCRDRATFDKTVAMINDFKQYFIDHHQPIYENPSPGNKAGGITTLEEKSLGCTQKAGQSQVVDVLKYGERLTVPGLNLLSAPGNDAVATSAL 403
                 *************************************************************************************************** PP

     GD_AH_C 299 vAaGanvvlFtTGrGtptgnpvvPviKvatntelaermsddiDvdagrilegeetieelgeellelilrvasGektkaeklgqeefviwkkgvv 392
                 ++aG+++vlF+TGrGtp+g  v P++K+atnt lae+++++iD++agr++eg +++e+l  +++++i+++a+G++t++e+++++e++i+k+gv+
  EHU02130.1 404 AGAGCHMVLFSTGRGTPYGGFV-PTVKLATNTPLAEKKPHWIDFNAGRLVEG-MSMEALLADFVDTIVAIANGQRTRNEQNDFRELAIFKSGVT 495
                 *********************9.***************************87.7************************************9985 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.4   2.7e-10   2.4e-06       1      61 [.      11      80 ..      11      82 .. 0.94
   2 ?   -3.7   0.0         2   1.8e+04      10      24 ..     376     390 ..     375     399 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.7e-10
                EEEEEESSTB-TT-BE..BTTTEEEECECGG.CCTSCCCGG.......HHHHTTEEESS-B-TT-B-BGGG CS
         SAF  1 dnVvvAardikaGevi..teddltlkrpias.hkigllpia.......ygeviGkratrdikaGepvhahn 61
                dnV+vA++di  G+ i   +  +tl++ + + hk++l   +       yg +i  +at++i aGe vh+hn
  EHU02130.1 11 DNVAVALQDIDIGTSIalADHPVTLRQAVERgHKFALRSLEkgetvvkYGLPIA-HATQAIGAGERVHSHN 80
                8***************666666********************************.***************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2
                 B-TT-BEBTTTEEEE CS
         SAF  10 ikaGeviteddltlk 24 
                 +k Ge++t ++l l 
  EHU02130.1 376 LKYGERLTVPGLNLL 390
                 789999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3653.52
//
Query:       EHU02131.1  [L=483]
Description: altronate oxidoreductase, NAD-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-56  191.6   0.0    2.2e-56  191.1   0.0    1.2  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    8.6e-27   94.1   0.0    2.2e-26   92.8   0.0    1.7  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.0   2.4e-60   2.2e-56       3     244 ..     205     456 ..     203     458 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 2.4e-60
  Mannitol_dh_C   3 vgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpe...lelvgvelvedvepyeerKlriLNggHaalaylgalaG 95 
                     +f nt+VDRIv++ ++d++ +le++lg++D + v+ E ++q+v+++++    +      + +v  ved+ py++ K++iLNg+H+a++++++laG
     EHU02131.1 205 CAFYNTLVDRIVTGFPADSV-ALEAQLGYQDHFLVAGEVYYQFVLQGPAALFDELrltALAPNVRRVEDIAPYKAQKVAILNGAHTAMVPVAFLAG 299
                    689***************99.9*************************987764444437789********************************** PP

  Mannitol_dh_C  96 yqtiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslr.rlikagtlpellalgval 190
                    ++ + eam+d +i+ +++ ll++e++p+l+  ++++l+++ad+++ RF+Np i++++ ++al+G++k+++r+l+ l  +++++g  p  l++++a+
     EHU02131.1 300 LESVGEAMEDTQIAGYIDDLLRKEIIPTLDL-PADELNAFADAVLRRFRNPFIHNALLSIALNGMTKFRTRLLQPLLiAHQQTGQWPTNLTFALAA 394
                    *******************************.*****************************************8876256666************* PP

  Mannitol_dh_C 191 wirylegvaeggnyiekeDpqleelqe........aallakervkavlaekeileedlaqnk 244
                    +i++++g+++      ++ p + ++++        + l+ +  v++vl e +++++dl+q +
     EHU02131.1 395 LIAFYRGEQADKRWTLQDEPYWLQRYAeswaavsaQRLSPAALVQQVLGEASHWGQDLTQLP 456
                    **************************99**9988777888999***************9976 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   2.5e-30   2.2e-26       2     150 ..      17     172 ..      16     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 2.5e-30
                  EEEEES-SHHHHHTHHHHHHHHTT.--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-S.....SS---EEEE--EEEEEEGGG-HHHHHHHHTSTT- CS
  Mannitol_dh   2 rivhfGaGnfhRahqayiddLlae.egldwgivevnlrevdareaLkaqdelyvviekg.....eeskearlvgsvnavlsveedlealieamaePei 93 
                  r+++fG Gnf Ra+ +++ d l+e +g d g+v v++r+ +  + L++qd+ly+++++g     e ++e+rl++svn+ ++ + + +a+++++ +P++
   EHU02131.1  17 RVIQFGEGNFLRAFIDWQLDWLNEhQGTDAGVVVVRPRNREVSDTLNQQDGLYTTLVRGlnaqgESVSESRLIRSVNREIQPYTQFDAFMALARQPDM 114
                  79******************99999********************************9668888999******************************* PP

                  -EEEE---TTTBE.TTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHTT----EEEE-SS CS
  Mannitol_dh  94 rivsltvtekGid.atgeletdlpaiaadlakpellvealkrrraaglkpltiisCdn 150
                  r+v++++te+Gi  ++ +  td pa + + + ++ll ++ ++   +  k++ i++C+ 
   EHU02131.1 115 RFVFSNTTEAGIAfSETDRLTDSPAASFPGKLTQLLWARYQHVAGDESKGWLIVPCEL 172
                  ***********8889999999***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3676.82
//
Query:       EHU02132.1  [L=471]
Description: uronate isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-222  739.8   0.1   1.4e-222  739.6   0.1    1.0  1  UxaC      Glucuronate isomerase


Domain annotation for each model (and alignments):
>> UxaC  Glucuronate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  739.6   0.1  7.7e-227  1.4e-222       1     464 []       1     465 [.       1     465 [. 1.00

  Alignments for each domain:
  == domain 1  score: 739.6 bits;  conditional E-value: 7.7e-227
        UxaC   1 mkkfleedfllsnetakklyheyakklPiiDyhchlspkeiaenkkfenltevwlegDhYkWramRanGveeklitGdasdkekflawaktvpktignP 99 
                 m++f++edfll++e+a++lyh+yak++P++Dyhchl+p++iaen +f nl+++wl+gDhYkWramRanGv e+l+tGdasd+ekf+awa+tvp+tignP
  EHU02132.1   1 MSRFMTEDFLLDTEFARRLYHDYAKDQPVYDYHCHLPPQQIAENYRFANLYDIWLKGDHYKWRAMRANGVAEALCTGDASDREKFNAWARTVPHTIGNP 99 
                 889************************************************************************************************ PP

        UxaC 100 lyhWthleLkrvFgide.llseksaeeiwekanelLaeeefkarelleksnvevvcttDdPidsLeyhkklaedeefkvkvlPtfRPDkalkiekeefa 197
                 lyhWthleL+r Fgi++ llsek+a+eiw+++n+lLa+++f+ar +++++nv++v+ttDdP+d+L +h+++aed +f+vkvlP++RPDka++ie+++f 
  EHU02132.1 100 LYHWTHLELRRPFGITGvLLSEKTADEIWQRCNDLLAQDAFTARGIMQQMNVKMVGTTDDPLDDLVHHRAIAEDGSFNVKVLPSWRPDKAFNIEADTFL 198
                 *****************789******************************************************************************* PP

        UxaC 198 dyvkkLeevseieiksfddllkalekrlefFeelGcrvsDhaleevvfaetkeeeleaifkkalegeelseeelekfktalllalaklyaekgwvmqlh 296
                  +++kLe+++++++++fddl +al+krl++F+++Gc++sDhal+ v++ae++e+ l++i++++++g + +++ +++fkta+l++l+ +ya++gwv+q+h
  EHU02132.1 199 PWIEKLESLTDVSVQRFDDLRQALSKRLDHFAAHGCKISDHALDVVCYAEADETMLDRILAHRRSGAKPDAQAIAQFKTAVLVWLGGEYARRGWVQQYH 297
                 *************************************************************************************************** PP

        UxaC 297 lgalRnnnsklleklGadtGfDsigdeeiakelaklldkldkkdelpktilyslnprdnevlatiigsFqdegvkgklqlGaaWWFnDtkdgmekqlka 395
                 +galRn+n++ ++ lGad+GfDsi+d+++a++la+ll + + +++lpkt+ly+lnprdnevlat++g+Fq+eg +gk+q+G+aWWFnD+ dgm++q+++
  EHU02132.1 298 IGALRNTNQRQFQLLGADVGFDSINDQPVAEPLARLLGAQNLNNALPKTVLYCLNPRDNEVLATMAGNFQGEGQAGKMQFGSAWWFNDQLDGMQRQMTQ 396
                 *************************************************************************************************** PP

        UxaC 396 lanvgllskFvGmltDsRsflsytRheyFRrilcdligewveegevpedeellgelvkdicynnakeyf 464
                 la++glls+FvGmltDsRsflsytRheyFRr+lc++ig+wv++ge p+de+llg++v++ic+nna++yf
  EHU02132.1 397 LAQIGLLSRFVGMLTDSRSFLSYTRHEYFRRLLCQMIGRWVDHGEAPADEALLGQMVQNICFNNARDYF 465
                 ********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3392.75
//
Query:       EHU02133.1  [L=434]
Description: hexuronate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-56  190.1  43.0    1.1e-47  162.7  23.1    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7  23.1     6e-52   1.1e-47       2     268 ..      16     287 ..      15     301 .. 0.90
   2 !   32.5  13.3   2.4e-12   4.3e-08      60     185 ..     301     424 ..     288     433 .. 0.86

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 6e-52
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                  l+++l +l+r+++++a+p +l+ +l+i+ ++++ ++++y++ + v+++++G++ d +G +  + + ++l+a ++++ ++ +++w  l+++r   G+++
  EHU02133.1  16 TLGTVLGYLTRNTIAVAAP-TLQIELHITTQQYSYIVAAYSACYTVMQPVAGYVLDLLGTKVGYAVFAVLWATFCAATAL-AGSWgGLALARGAVGAAE 112
                 6899***************.9*****************************************999999999999566666.99999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........kg 190
                 +a++pag+ + ++wfp +er+ a+g++++g+s+Ga+++p+l  + + + +W+ +f+i++++s+++++++l+++  ++ ++k + +++          ++
  EHU02133.1 113 AAMIPAGLKASSEWFPAKERSVAVGYFNVGSSIGAMVAPPLVVWAIVAHSWQMAFIIAGVLSMIWALCWLVFYKHPKQQNKLSDEERNYiisgqelqHQ 211
                 ********************************************************************7777766666666665555559999999999 PP

       MFS_1 191 tgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls 268
                 tg++   +   ++l+++++w + +  +l+  ++ ++ +++pl++ +v+g++ l +++l+  +++l++ ++++l+g+l 
  EHU02133.1 212 TGNTTKMS-ALQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFN-LKEIALFAWMPMLFADFGCILGGYLP 287
                 99999999.788888888**66666666666********************.************************85 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 2.4e-12
       MFS_1  60 GrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyila 158
                 +r+ v+ +g++l++  ++++lf +s ++ ++l ++ G++  al  + ++l +d+f ++e + a+gl ++++  ++ l +l+ g+la+ lg++ +f +la
  EHU02133.1 301 SRKMVVTMGAILMIGPGTIGLF-TSPYVAIALLCVGGFAHQALSGTLITLSSDVFGRNEVATANGLTGMAAWTASTLFALVVGALADTLGFSPLFAALA 398
                 45557777777777779****9.55459*********************************************************************** PP

       MFS_1 159 ivsllafvlfllllpeepperkrkspk 185
                 ++ ll+++ +++ ++ ++p ++ ++p 
  EHU02133.1 399 VFDLLGAI-VIWTVLKNQPVSELQTPH 424
                 *****988.468888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3319.43
//
Query:       EHU02134.1  [L=258]
Description: DNA-binding transcriptional repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-22   78.3   0.9    5.7e-22   77.1   0.9    1.7  1  GntR             Bacterial regulatory proteins, gntR family
    7.2e-18   65.2   8.6    1.2e-17   64.5   8.6    1.4  1  FCD              FCD domain
     0.0023   18.2   0.1     0.0055   17.0   0.1    1.7  1  Rrf2             Transcriptional regulator
     0.0035   17.5   0.1     0.0066   16.6   0.1    1.5  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
     0.0073   16.2   2.1     0.0073   16.2   2.1    1.6  2  2_5_RNA_ligase2  2'-5' RNA ligase superfamily
     0.0099   15.4   0.1      0.016   14.7   0.1    1.3  1  XFP_C            XFP C-terminal domain
  ------ inclusion threshold ------
      0.041   13.8   0.2       0.16   11.9   0.0    2.0  2  HTH_11           HTH domain
      0.055   13.2   0.1        0.1   12.3   0.1    1.4  1  HTH_41           Helix-turn-helix domain
        0.1   12.6   0.5       0.51   10.4   0.1    2.3  3  HTH_46           Winged helix-turn-helix DNA binding


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.9   2.9e-25   5.7e-22       1      64 []       9      72 ..       9      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 2.9e-25
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ly+q++ +L+++I +g+++ GdkLP+er +a+e+ Vsrt+vReA+++Le eg+ve+r+g+G++V
  EHU02134.1  9 LYQQLASELKRRIENGVYQVGDKLPAERLIAEEMQVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72
                79************************************************************98 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   8.6     6e-21   1.2e-17       1     124 [.      97     220 ..      97     221 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 6e-21
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr..lrrlals..sperlee 95 
                 +l+++R+l+E+ +a+ aa+++t +d+ +l ++ e+ ++ +  +d    +e d++FH  +a+ ++n  la+++e ++ +  +  ++   ++  +++ +  
  EHU02134.1  97 ELLQARQLIESNVAEFAATQVTRQDIVDLMAIQEKARQEDHFRD----SEWDMHFHVRIAQSTQNSALAAIVEKMWLHRLHnpYWLKLHEhiDQRSILS 191
                 799**************************************999....79**************************9999865444444488******* PP

         FCD  96 slaeHraildAirardadaAraamrrHle 124
                 ++++H +il+A+ ++d++a + am++Hle
  EHU02134.1 192 WCDDHDQILKALIRKDPAASKLAMWQHLE 220
                 ****************************8 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.7e-06    0.0055      30      61 ..      37      68 ..      27      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.7e-06
                HHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 30 eiaerqnispsylekilakLrkaglvksvrGk 61
                 iae++++s+++++  + +L+ +g+v++++G 
  EHU02134.1 37 LIAEEMQVSRTVVREAIIMLEVEGYVEVRKGS 68
                59*****************************8 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.3e-06    0.0066      24      59 ..      34      69 ..      25      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.3e-06
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                        +ae+++vs   V e +  Le +Gyve+ k +g
      EHU02134.1 34 AERLIAEEMQVSRTVVREAIIMLEVEGYVEVRKGSG 69
                    55679**************************99877 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.1   3.7e-06    0.0073      49     149 ..      80     193 ..      64     196 .. 0.66
   2 ?   -3.3   0.0       3.7   7.4e+03     123     142 ..     220     240 ..     207     245 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.7e-06
  2_5_RNA_ligase2  49 rlaketepfe.vrldgfgvFeh....kksvvylsv.......sdsealqalraallealpeagdkeds.geftPHlTiaqsadstsaaellekl 129
                      r+a++ +++e ++++ f   +     +      +v        + +++++l a ++e+  ++++ +ds ++ ++H+ iaqs  + + a+++ek+
       EHU02134.1  80 RVAESSSQLEfATFGPFELLQArqliE-----SNVaefaatqVTRQDIVDLMA-IQEKARQEDHFRDSeWDMHFHVRIAQSTQNSALAAIVEKM 167
                      445444544444444444444344433.....333222224535555555544.333333334444446************************* PP

  2_5_RNA_ligase2 130 ......aqalpplefevdevallrrd 149
                            + +++ l+ ++d++++l++ 
       EHU02134.1 168 wlhrlhNPYWLKLHEHIDQRSILSWC 193
                      *****999***********9999875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.7
  2_5_RNA_ligase2 123 aellekl.aqalpplefevde 142
                      ++ +++l +   +++ef+vd+
       EHU02134.1 220 ENTKQMLfNATADDFEFNVDR 240
                      334444455556666677765 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     8e-06     0.016      16      97 ..      63     148 ..      55     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8e-06
       XFP_C  16 hckkGasiwewastdege....epdvvlagiGdeptlEvlaAvellreelpe...lkvrvvnvvdLmklqeesehphglsdeefdelFt 97 
                 +++kG +i  +as+++ +      ++ +a+ G    +E l+A +l+++++ e    +v   ++vdLm++qe++++++ + d+e+d  F 
  EHU02134.1  63 EVRKGSGIHVIASQQQTRvaesSSQLEFATFG---PFELLQARQLIESNVAEfaaTQVTRQDIVDLMAIQEKARQEDHFRDSEWDMHFH 148
                 57778888888886655322224566666666...48**********988772114555568***********************9985 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05      0.16      21      54 ..      38      70 ..      30      71 .. 0.90
   2 ?   -2.1   0.0         2   3.9e+03       4      15 ..     198     209 ..     196     214 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-05
      HTH_11 21 LAeeLnvSrrtvrrdIkaLeelgvpIesepgrGY 54
                +Aee+ vSr++vr  I  Le  g  +e ++g+G+
  EHU02134.1 38 IAEEMQVSRTVVREAIIMLEVEG-YVEVRKGSGI 70
                8****************999999.8888888885 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
      HTH_11   4 qilelLleargp 15 
                 qil+ L+++++ 
  EHU02134.1 198 QILKALIRKDPA 209
                 899999998874 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.2e-05       0.1       1      39 [.      27      65 ..      27      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
      HTH_41  1 kvGdRlktIeelakeleLSvGlvQkALklLeddkaisle 39
                +vGd+l+    +a+e+ +S+  v  A+ +Le ++ +++ 
  EHU02134.1 27 QVGDKLPAERLIAEEMQVSRTVVREAIIMLEVEGYVEVR 65
                69********************************99984 PP

>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00026      0.51      25      59 ..      34      68 ..      11      74 .. 0.89
   2 ?   -1.0   0.0      0.89   1.8e+03       5      22 ..     118     135 ..     115     136 .. 0.84
   3 ?   -3.8   0.0       6.8   1.3e+04      27      36 ..     182     191 ..     179     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
      HTH_46 25 vlkyIqkrtnLSrSsimkvLseLkkggyIeierGk 59
                +   I +  ++Sr ++ + +  L  +gy+e+++G 
  EHU02134.1 34 AERLIAEEMQVSRTVVREAIIMLEVEGYVEVRKGS 68
                566799999************************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.89
      HTH_46   5 iralLleLielpeelren 22 
                  r+ + +L++ +e+ r++
  EHU02134.1 118 TRQDIVDLMAIQEKARQE 135
                 5888999******99985 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6.8
      HTH_46  27 kyIqkrtnLS 36 
                 ++I +r  LS
  EHU02134.1 182 EHIDQRSILS 191
                 7899999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2106.02
//
Query:       EHU02135.1  [L=224]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-20   73.7   6.6    1.7e-20   73.7   6.6    1.8  2  SNARE_assoc      SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.66   10.4   3.4        2.8    8.4   0.1    3.3  4  Phage_holin_5_2  Phage holin family Hol44, in holin superfami


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   6.6   1.9e-24   1.7e-20       1     118 [.      48     172 ..      48     174 .. 0.95
   2 ?   -1.5   0.1      0.38   3.4e+03      71      83 ..     189     200 ..     180     215 .. 0.52

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.9e-24
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka...lerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++ ll+++Gvl+     ++ l++lv+ +ga+lG++++y+ gr+lg+   ++ +ls+ ++++   ++ l++r+g +all++r++++v r+l++ +aG
   EHU02135.1  48 LPGDSLLILVGVLIakgtmSFPLTILVLTTGASLGCWVSYIQGRWLGNTPTVQNWLSHLPARYhqrAHNLFHRHGLSALLVGRFIAFV-RTLLPTIAG 144
                  79************995555556**********************************999999999**********************.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylG 118
                  l+++s +rF ++++++ ++w++++++lG
   EHU02135.1 145 LSGLSNARFQFFNWMSGFLWVVILTVLG 172
                  *************************998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.38
  SNARE_assoc  71 llllrllpivPrd 83 
                  +++l +lp v   
   EHU02135.1 189 MFFLMMLPLV-LL 200
                  5555555544.22 PP

>> Phage_holin_5_2  Phage holin family Hol44, in holin superfamily V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.32   2.9e+03      54      61 ..      54      61 ..      23      71 .. 0.48
   2 ?   -0.1   0.0      0.13   1.2e+03       4      22 ..      85     103 ..      83     105 .. 0.90
   3 ?   -2.8   0.0      0.92   8.3e+03      21      32 ..     137     148 ..     125     157 .. 0.71
   4 ?    8.4   0.1   0.00031       2.8       2      39 ..     165     211 ..     164     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.32
  Phage_holin_5_2 54 aiiqGils 61
                      i++G+l+
       EHU02135.1 54 LILVGVLI 61
                     35555554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.13
  Phage_holin_5_2   4 ilyiiGeilKktekvkdky 22 
                      + yi G +l +t++v++++
       EHU02135.1  85 VSYIQGRWLGNTPTVQNWL 103
                      789***********99985 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.92
  Phage_holin_5_2  21 kyIPlilgiiGi 32 
                       + P+i g+ G+
       EHU02135.1 137 TLLPTIAGLSGL 148
                      456777777665 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.00031
  Phage_holin_5_2   2 vvilyiiGeilKktekvkd.........kyIPlilgiiGiilgvviv 39 
                      vvil ++G++l kt+ +            + Pl+l+++G+i ++v++
       EHU02135.1 165 VVILTVLGFALGKTPIFRRyedelmfflMMLPLVLLVVGLIGSLVVL 211
                      7888899999999987776888888888999************6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 1840.52
//
Query:       EHU02136.1  [L=115]
Description: YqiC family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-19   67.8   0.0    1.1e-18   67.5   0.0    1.0  1  SecD-TM1  SecD export protein N-terminal TM region
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.28   11.2   0.0    1.5  1  MNSV_P7B  Melon necrotic spot virus P7B protein


Domain annotation for each model (and alignments):
>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.3e-22   1.1e-18       6     102 ..      10     104 ..       8     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.3e-22
    SecD-TM1   6 lWkyllilvvlligllyalPnlygedpavqisaakatlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvlekaLgddyvvA 102
                  W+ +li  ++++ +++ +P l+ ++  vqi+ ++a++ +++++  +++q+L+++gi++ksi++ +++l+++f++++q+l+A++vl++ L+++++vA
  EHU02136.1  10 HWRPWLIGGAFALIAISLVPGLMRHENVVQIRVSHAGAPMPDGF--YLYQQLSAQGIRIKSITPAGDALVIHFDNEEQSLAAQKVLRRLLPEGFIVA 104
                 6*******************************************..9*************************************************9 PP

>> MNSV_P7B  Melon necrotic spot virus P7B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05      0.28      28      46 ..      65      83 ..      52      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.1e-05
    MNSV_P7B 28 yitslspqGntyvhhfdns 46
                 i s++p G++ v hfdn 
  EHU02136.1 65 RIKSITPAGDALVIHFDNE 83
                589**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 863.37
//
Query:       EHU02137.1  [L=124]
Description: periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-34  117.1  17.6    4.6e-34  116.8  17.6    1.0  1  DUF1090          Protein of unknown function (DUF1090)
     0.0091   15.3   5.9     0.0091   15.3   5.9    1.3  1  AKAP2_C          A-kinase anchor protein 2 C-terminus
  ------ inclusion threshold ------
      0.031   14.5   1.5      0.039   14.1   1.5    1.2  1  Pox_T4_C         Poxvirus T4 protein, C terminus
       0.11   12.4   1.7       0.17   11.8   1.6    1.4  1  PepSY_TM_like_2  Putative PepSY_TM-like
        0.2   12.2   0.3       0.25   11.9   0.3    1.2  1  Acyl-thio_N      Acyl-ATP thioesterase
       0.25   10.1   1.9       0.28    9.9   1.9    1.0  1  O-antigen_lig    O-antigen ligase like membrane protein
       0.33   10.3   8.4       0.43    9.9   8.4    1.1  1  DUF4407          Domain of unknown function (DUF4407)
       0.55   10.7  11.8       0.67   10.4  11.8    1.1  1  AAA_23           AAA domain
       0.95    9.8   8.2       0.46   10.8   4.9    2.0  2  Tli4_N           Tle cognate immunity protein 4 N-terminal do
          1    7.9  10.4        1.1    7.7  10.4    1.0  1  FapA             Flagellar Assembly Protein A
        1.4    8.4   9.4        1.8    8.1   9.4    1.0  1  Exonuc_VII_L     Exonuclease VII, large subunit
        4.2    5.4  13.3        4.8    5.3  13.3    1.0  1  HSP70            Hsp70 protein
        5.5    7.2  17.5        4.9    7.4  14.7    2.2  2  I_LWEQ           I/LWEQ domain
        7.7    5.2   5.1        8.3    5.1   5.1    1.0  1  Presenilin       Presenilin


Domain annotation for each model (and alignments):
>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8  17.6   3.6e-37   4.6e-34       4     110 .]      12     118 ..       9     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.6e-37
     DUF1090   4 lslaaaaaaaalsgCaaKkqaIekqieaAkahgnqkrvagLekaLkevkanCtdeklkaerqekveekeeeVaereaeLaeakekg.dkdkiakrqekL 101
                 +sl+ +   aa+s C++K+q+I+++ie+Ak+h+nq+rv+gLe+aL+ev+a Ctd+klka + ek+++++++Vaere+eL+e++++g dkdki+kr++kL
  EHU02137.1  12 FSLSGSL-MAAESLCQQKEQDIQHEIEMAKKHNNQRRVNGLERALTEVRAGCTDKKLKASHLEKINAQKQKVAERERELKEERDEGhDKDKITKREHKL 109
                 4555555.6679**************************************************************************99*********** PP

     DUF1090 102 aeakeeLke 110
                 +ea++eLk+
  EHU02137.1 110 EEARQELKK 118
                 *******96 PP

>> AKAP2_C  A-kinase anchor protein 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.9   7.1e-06    0.0091     188     245 ..      32      94 ..      23      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.1e-06
     AKAP2_C 188 lrfrvpdepeqaeakrvwgweva.....gapalrkqrsqasellerEvkevleRErElaeqRr 245
                 ++ +++  +++++++rv g e a     ++   +k++ +  e++    ++v eRErEl+e+R 
  EHU02137.1  32 IQHEIEMAKKHNNQRRVNGLERAltevrAGCTDKKLKASHLEKINAQKQKVAERERELKEERD 94 
                 6667778889999999999999999999999*******************************6 PP

>> Pox_T4_C  Poxvirus T4 protein, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.5   3.1e-05     0.039      57     132 ..      26     104 ..      12     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
    Pox_T4_C  57 gkekdeleseveitilidts.cvrs.ssfavsvrtlce.eklkgesiekltcqlvkgeqhekylkacernspdrrlfkk 132
                 +++ ++++ e+e++ + ++   v++ +  + +vr+ c+ +klk++ +ek++ q  k+ + e+ lk    +  d+  + k
  EHU02137.1  26 QQKEQDIQHEIEMAKKHNNQrRVNGlERALTEVRAGCTdKKLKASHLEKINAQKQKVAERERELKEERDEGHDKDKITK 104
                 45556778888888887765246652456789*****8468************************98888888755544 PP

>> PepSY_TM_like_2  Putative PepSY_TM-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.6   0.00013      0.17      17      90 ..       5      76 ..       2     116 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  PepSY_TM_like_2 17 flvglllFavtGitLNhaeqieaepsvtekelelpeellallkeeakkeelalpeelaqwlkkqlalsaakrea 90
                     +l+g++lF+++G ++   +  ++++++ ++e+e+ ++  ++  + ++  e al e  a   +k+l+ s++++ +
       EHU02137.1  5 LLLGIVLFSLSGSLMAAESLCQQKEQDIQHEIEMAKKHNNQ--RRVNGLERALTEVRAGCTDKKLKASHLEKIN 76
                     689**************999999***********9998844..4444444444333333333333333333322 PP

>> Acyl-thio_N  Acyl-ATP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3    0.0002      0.25      28      83 ..      38      95 ..      12     105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
  Acyl-thio_N 28 l.gegkesldlrGikakpasssg.alkvkanaqavpkvngtkvgladseekvkedeev 83
                 +  +++++  ++G++   + +++  +  k +a  + k+n++k ++a+ e ++ke+ + 
   EHU02137.1 38 MaKKHNNQRRVNGLERALTEVRAgCTDKKLKASHLEKINAQKQKVAERERELKEERDE 95
                 2245567778999998877765526778899999**************9999998554 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   0.00022      0.28     245     350 ..       3     117 ..       1     123 [. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00022
  O-antigen_lig 245 kklllaiillvligillaiypyspiyrrkelkekeieiksekkeeeeikne.............ikenykseglkeavleqyeyandkqfsqellk 327
                     klll+i+l+ l g+   +++ + + ++ke ++ ++ei+ +kk++++++ +             +++++k  +l++   ++++ a+ +++ +e  +
     EHU02137.1   3 NKLLLGIVLFSLSGS---LMAAESLCQQKEQDI-QHEIEMAKKHNNQRRVNgleraltevragcTDKKLKASHLEKINAQKQKVAERERELKEERD 94 
                    567678888887775...666666666665554.33444444444444444577777778999999999999999888888888888888888888 PP

  O-antigen_lig 328 eeveslllsnRdlqlkvlkqvyk 350
                    e   + ++ +R+ +l++  q  k
     EHU02137.1  95 EGHDKDKITKREHKLEEARQELK 117
                    88888889999988888777666 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.4   0.00033      0.43     148     231 ..      17     121 ..      10     123 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00033
     DUF4407 148 eidaaearldalraeaqkeldgtk....gtgttgvaGkgpaake....................kkaqldaaqaelaelkakldatarlaalraelael 222
                  + aae+  ++++++ q e++ +k    +    +v+G + a +e                     k++ +++++el+e +++   ++++++++ +l+e+
  EHU02137.1  17 SLMAAESLCQQKEQDIQHEIEMAKkhnnQ---RRVNGLERALTEvragctdkklkashlekinaQKQKVAERERELKEERDEGHDKDKITKREHKLEEA 112
                 55566666666666666666666665331...2233333333333335555555444444444455555555555555555555555555555555555 PP

     DUF4407 223 eaerakera 231
                 ++e++k +a
  EHU02137.1 113 RQELKKLQA 121
                 555544443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  11.8   0.00052      0.67     115     189 ..      26     120 ..      10     122 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00052
      AAA_23 115 deleqfisellgskkiilnlilflgqer....................feefelkdkke....rleelekeleeledekkllekleqekekekeleele 189
                 +++eq i+++++  k+ +n+    g er                    +     +++k+    r +el++e +e  d++k  +++++++e ++el++l+
  EHU02137.1  26 QQKEQDIQHEIEMAKKHNNQRRVNGLERaltevragctdkklkashleK----INAQKQkvaeRERELKEERDEGHDKDKITKREHKLEEARQELKKLQ 120
                 3457999999999999999999999999777777777544443322211....1222221222333333344444444444444456666666666655 PP

>> Tli4_N  Tle cognate immunity protein 4 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.68   8.8e+02      26      55 ..      29      58 ..      19      70 .. 0.72
   2 ?   10.8   4.9   0.00036      0.46      27      74 ..      63     111 ..      54     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.68
      Tli4_N 26 igdvkieskrvspeafrqriakreqeLkae 55
                 +d+++e + +++   ++r++  e++L + 
  EHU02137.1 29 EQDIQHEIEMAKKHNNQRRVNGLERALTEV 58
                456666777777778888888888887765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00036
      Tli4_N  27 gdvkieskrvsp.eafrqriakreqeLkaekrikekdepllkkavslpd 74 
                  d k++++ + + +a +q++a+re+eLk+e+ + +++  ++k+ ++l++
  EHU02137.1  63 TDKKLKASHLEKiNAQKQKVAERERELKEERDEGHDKDKITKREHKLEE 111
                 56688666666779*****************998777777777766665 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.4   0.00088       1.1     311     411 ..      19     119 ..       2     123 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00088
        FapA 311 vkakklGselgtkteiev.gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeel 408
                 + a++l+ + ++ ++ e+   ++++ +++++ le+ l e+++ +++ k k ++l+k++a+kq  +e++ +lk+ + +  + k+++++ e++l+e  +el
  EHU02137.1  19 MAAESLCQQKEQDIQHEIeMAKKHNNQRRVNGLERALTEVRAGCTDKKLKASHLEKINAQKQKVAERERELKEERDE-GHDKDKITKREHKLEEARQEL 116
                 556789999999999999556656666666********************999999888887666666666555544.455566666666666666665 PP

        FapA 409 esk 411
                 ++ 
  EHU02137.1 117 KKL 119
                 554 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   9.4    0.0014       1.8     135     258 ..      21     118 ..      12     123 .. 0.35

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0014
  Exonuc_VII_L 135 Aelvvpd.kaeleeqleelerrlekaikrlleekkqrlekl..asrlk.speellerkrqrldeleerleralkkq.....lkkkrerleelkerlk 222
                   Ae ++++ ++++++++e ++++ ++   + le++ +++++   +++lk s  e++++++q++ e e++l+++ ++      ++k++++lee++++l 
    EHU02137.1  21 AESLCQQkEQDIQHEIEMAKKHNNQRRVNGLERALTEVRAGctDKKLKaSHLEKINAQKQKVAERERELKEERDEGhdkdkITKREHKLEEARQEL- 116
                   333333312344444444444333333333333322222211123333334444444444444444444442211122222333333333333222. PP

  Exonuc_VII_L 223 ekleekkerlkklkerlelleekkerleeleeklea 258
                                                     ++
    EHU02137.1 117 ----------------------------------KK 118
                   ..................................22 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.3    0.0037       4.8     500     595 ..      22     118 ..      15     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0037
                 SSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.GGGSTHHHHHHHHHHHHHHHCHT.TSSCHHHHHHHHHHHHHHHHHHHH CS
       HSP70 500 eglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee.aekvseaekekvesaieeLkeel.eeeekeeieakteelkkvvekiae 595
                 e+l +++++ ++++ e  ++++++++ +  +++ +e  +  ++kkl+ +  ek++ a+k+kv + ++eLkee  e+++k++i ++ ++l+++ +++ +
  EHU02137.1  22 ESLCQQKEQDIQHEIEMAKKHNNQRRVNGLERALTEVRAGCTDKKLKAShLEKIN-AQKQKVAERERELKEERdEGHDKDKITKREHKLEEARQELKK 118
                 5566667777777777777777777766666666666666677777776445554.777999999999999873567799999999999999888764 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   8.4      0.14   1.8e+02      92     142 ..      36      94 ..      17      98 .. 0.64
   2 ?    7.4  14.7    0.0038       4.9      62     152 ..      39     124 .]      37     124 .] 0.78

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.14
      I_LWEQ  92 vkeakekqeeee....s...eeeeldisklslvqakrqemeaqv.kilklekeLeeark 142
                 +++ak+++++++    +   +e +   ++++l +++ ++++aq+ k+++ e+eL+e+r+
  EHU02137.1  36 IEMAKKHNNQRRvnglEralTEVRAGCTDKKLKASHLEKINAQKqKVAERERELKEERD 94 
                 34444333333343331444444555899999999999999875389**********97 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0038
      I_LWEQ  62 vKadknskslkrLeaaskaVkkatkelvkavkeakekqeeeeseeeeldisklslvqakrqemeaqvkilklekeLeearkkLaeirkakY 152
                 +K ++n++  + Le+a  +V+  + +   ++ + ++ + ++++       ++ ++ +  r e   + ki k e++Leear++L++++ + Y
  EHU02137.1  39 AKKHNNQRRVNGLERALTEVRAGCTDKKLKASHLEKINAQKQKV-----AERERELKEERDEGHDKDKITKREHKLEEARQELKKLQAEPY 124
                 788899999999********987754433333333333332224.....67889999*****************************99887 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.1    0.0065       8.3     225     300 ..      28     107 ..       2     122 .. 0.29

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0065
  Presenilin 225 aeek.kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse.........................seeeseeesseaessaeesseekesee 297
                 +e++ ++e +++++++++++ +                        e                         ++++  e+++e +++ +e +++++ ++
  EHU02137.1  28 KEQDiQHEIEMAKKHNNQRRVNG-------L---------------EraltevragctdkklkashlekinaQKQKVAERERELKEERDEGHDKDKITK 104
                 11112222222222222222211.......1...............01111222222222222222221111111111222222222222111111111 PP

  Presenilin 298 sse 300
                 +++
  EHU02137.1 105 REH 107
                 111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2754  (0.153606); expected 358.6 (0.02)
Passed bias filter:                      709  (0.0395449); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 970.42
//
Query:       EHU02138.1  [L=101]
Description: uncharacterized DUF883 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-26   92.3   1.5    2.4e-26   92.2   1.5    1.0  1  DUF883           Bacterial protein of unknown function (DUF88
    0.00039   20.9   7.0       0.14   12.7   0.4    2.9  2  YtxH             YtxH-like protein
     0.0056   16.6   3.8     0.0067   16.3   3.8    1.1  1  Apolipoprotein   Apolipoprotein A1/A4/E domain
     0.0066   16.2   0.4     0.0093   15.7   0.4    1.2  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
  ------ inclusion threshold ------
      0.024   14.7   1.4      0.037   14.1   1.4    1.3  1  DUF1640          Protein of unknown function (DUF1640)
      0.057   13.3   1.3      0.071   13.0   1.3    1.1  1  Remorin_C        Remorin, C-terminal region
      0.082   13.1   2.5       0.43   10.8   0.2    2.0  2  K-box            K-box region
        0.1   12.0   0.1       0.12   11.8   0.1    1.0  1  RNase_E_G        Ribonuclease E/G family
       0.22   12.2   2.1       0.33   11.6   2.1    1.5  1  DUF4404          Domain of unknown function (DUF4404)


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   1.5   1.2e-29   2.4e-26       2      94 .]       9     101 .]       8     101 .] 0.99

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 1.2e-29
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                  l+ael++l ++lee+l++  +++++e+++lR +++ +l+++rerl +  e++a+ ++eaa++ad yVr+nPw+ vGi+a++G+ +G+L++rR
  EHU02138.1   9 HLRAELKNLADTLEEVLSSGTEKSKSELDKLRHKARVALDSSRERLGESGERLAATTREAAQKADGYVRDNPWHGVGIGAAIGVAIGMLISRR 101
                 689*****************************************************************************************9 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   1.4   0.00077       1.5      30      68 ..      10      48 ..       4      78 .. 0.71
   2 !   12.7   0.4   7.2e-05      0.14       3      19 ..      83      99 ..      81     101 .] 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00077
        YtxH 30 lkekaddlkekakelleeakekakekaedlkekvkekad 68
                l+ ++++l++ ++e+l +  ek+k++ ++l+ k++   d
  EHU02138.1 10 LRAELKNLADTLEEVLSSGTEKSKSELDKLRHKARVALD 48
                556667777777777788888887777777777654444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.2e-05
        YtxH  3 glliGaavGaaaglLlA 19
                g+ iGaa+G+a+g+L++
  EHU02138.1 83 GVGIGAAIGVAIGMLIS 99
                899************86 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.8   3.4e-06    0.0067     102     161 ..       8      70 ..       2      79 .. 0.34

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.4e-06
                     HHHHHHHHHHHHHHHHHHCHHHHHHHH...HHHHHHHHHHH-----..-----SSSHHHHHHH CS
  Apolipoprotein 102 eelrerlerhvealkarlapyveelrq...klaerleelkeslaphaeeveerlssrveelre 161
                     e lr +l+  +++l + l+  +e+ ++   kl++++    +s ++++ e++erl+ + +e+ +
      EHU02138.1   8 EHLRAELKNLADTLEEVLSSGTEKSKSeldKLRHKARVALDSSRERLGESGERLAATTREAAQ 70 
                     222222222222222222222222221111333333333333333333333333333333333 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   4.7e-06    0.0093      24      44 ..      79      99 ..      72     101 .] 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.7e-06
                     XXXXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG 24 gggkGAaiGAaaGalaGgaiG 44
                     + ++G +iGAa+G + G +i 
       EHU02138.1 79 NPWHGVGIGAAIGVAIGMLIS 99
                     567899999999999998876 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   1.8e-05     0.037      71     137 ..       8      74 ..       1      79 [. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
     DUF1640  71 rsefaalrseteklqreleklkqkLreeidklkadirldlnleKgrireelakleakiqelnnkidr 137
                 ++  a+l++  + l++ l   ++k ++e+dkl+++ r+ l++ ++r  e  ++l a ++e  +k d 
  EHU02138.1   8 EHLRAELKNLADTLEEVLSSGTEKSKSELDKLRHKARVALDSSRERLGESGERLAATTREAAQKADG 74 
                 4444555555556666666667788889999999999999999999999999999999998888876 PP

>> Remorin_C  Remorin, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   3.6e-05     0.071      38      96 ..       8      66 ..       3      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
   Remorin_C 38 akaeaelrkleeklEkkrakaleklknklariekkAeekRasaeakrreeelktkekan 96
                + ++ael++l   lE+  ++ +ek k++l + ++kA  +  s +++ +e   + + +++
  EHU02138.1  8 EHLRAELKNLADTLEEVLSSGTEKSKSELDKLRHKARVALDSSRERLGESGERLAATTR 66
                6789********************************99988888887666555554443 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.068   1.4e+02       9      55 ..       8      24 ..       1      28 [. 0.52
   2 ?   10.8   0.2   0.00021      0.43       9      41 ..      30      62 ..      26      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.068
       K-box  9 eelkqEvskLkkeieklqrsqRkllGedleslslkeLqqLEqqLeks 55
                e+l++E+++L ++                              Le+ 
  EHU02138.1  8 EHLRAELKNLADT------------------------------LEEV 24
                4455555555555..............................4444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00021
       K-box  9 eelkqEvskLkkeieklqrsqRkllGedlesls 41
                e+ k+E++kL+++ +   +s R++lGe+ e l+
  EHU02138.1 30 EKSKSELDKLRHKARVALDSSRERLGESGERLA 62
                6789***********************988775 PP

>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     6e-05      0.12      52     124 ..       3      77 ..       1      83 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
   RNase_E_G  52 egaseeelekdleelkkkweeileka..kkrkapsllyeeedlllrvlrdllnedieeivvddkelyeeikeyle 124
                 +++s e+l+++l++l+++ ee+l++   k++++   l +++ ++l   r+ l e+ e++   ++e+ +++  y++
  EHU02138.1   3 KDTSSEHLRAELKNLADTLEEVLSSGteKSKSELDKLRHKARVALDSSRERLGESGERLAATTREAAQKADGYVR 77 
                 67899*******************995433666889******************************999999885 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   0.00017      0.33      16      52 ..       4      38 ..       1      73 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
     DUF4404 16 esldeetralLeslaedieellaeedaaaeeeelaer 52
                ++ +e  ra+L++la+ +ee+l++ ++++++e l  +
  EHU02138.1  4 DTSSEHLRAELKNLADTLEEVLSSGTEKSKSE-LD-K 38
                56678888899999999999988888887775.22.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1371  (0.0764683); expected 358.6 (0.02)
Passed bias filter:                     1052  (0.0586759); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 694.53
//
Query:       EHU02139.1  [L=131]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-23   80.4  10.2    1.1e-22   80.2  10.2    1.0  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
      0.067   12.9   2.2      0.082   12.7   2.2    1.2  1  Claudin_2        PMP-22/EMP/MP20/Claudin tight junction
      0.084   13.3   6.7        4.7    7.7   5.5    2.2  2  DUF983           Protein of unknown function (DUF983)
        0.2    9.9   2.7       0.23    9.7   2.7    1.1  1  OATP             Organic Anion Transporter Polypeptide (OATP)
       0.21   11.0   4.1       0.23   10.9   4.1    1.1  1  DUF373           Domain of unknown function (DUF373)
        2.4    7.8   5.8        3.9    7.1   5.8    1.3  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2  10.2   3.7e-26   1.1e-22       5     112 ..      19     127 ..      16     128 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 3.7e-26
  Phage_holin_3_6   5 rrltaqlssLvrteleLakaElkeeakragsgagllgaagvlallalllllvalalala.a.lwlaalivaavllvlagvlalvglkklkkakp 96 
                      +r++++l+s+v+t+++La aEl+ee++++++++++lg+++++++++l++l+v++++a++   + +a  i+++vl++la++++l++l+k ++ ++
       EHU02139.1  19 QRIVTTLVSMVETRVRLAVAELEEEKANLIQMLLMLGLTMLFTAFGLMSLMVLIIWAVDaQyRLMAIAITTGVLFLLALIFGLWTLRKSRQ-ST 111
                      799*******************************************************966999***********************8888.66 PP

  Phage_holin_3_6  97 lpertieelkedvaal 112
                      l+++t++el++d+++l
       EHU02139.1 112 LLRHTRKELANDRDLL 127
                      7************987 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   2.2   2.7e-05     0.082      89     140 ..      45     104 ..      16     123 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
   Claudin_2  89 arfvqvlliLslvlivlavvlgllal.lkqsv.......lllkaagilfllagvlgllav 140
                 a  +q+ll+L+l+++++a+ l++l + +  +v        +  ++g+lflla ++gl+ +
  EHU02139.1  45 ANLIQMLLMLGLTMLFTAFGLMSLMVlIIWAVdaqyrlmAIAITTGVLFLLALIFGLWTL 104
                 456788888888888888755543320222224455555566667777777777777765 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0089        26      23      54 ..       6      37 ..       1      59 [. 0.81
   2 ?    7.7   5.5    0.0016       4.7      28      77 ..      58     108 ..      54     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0089
      DUF983 23 addgPayfvilivghlvvplallvevayeppl 54
                +  gPa  vi+i   +v++l+ +ve+++++ +
  EHU02139.1  6 QNHGPAKGVITIGQRIVTTLVSMVETRVRLAV 37
                5689*********************9998754 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
      DUF983  28 ayfvilivghlvvplallvevayep.plwvhlliwlpltlllsllllrplK 77 
                 + f+ + ++ l+v ++ +v+++y++  + +++ ++++l+l++ l++lr ++
  EHU02139.1  58 MLFTAFGLMSLMVLIIWAVDAQYRLmAIAITTGVLFLLALIFGLWTLRKSR 108
                 6799999999*************996788888889999999******9876 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.7   7.6e-05      0.23     459     513 ..      46     100 ..      15     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 459 klllflillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPg 513
                 +l+  l++l l+++++a+g ++ +++i+  V+ + + +a+++++ ++ ll+li g
  EHU02139.1  46 NLIQMLLMLGLTMLFTAFGLMSLMVLIIWAVDAQYRLMAIAITTGVLFLLALIFG 100
                 5778899999*****************************************9976 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.1   7.6e-05      0.23     174     245 ..      40     107 ..      14     122 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
      DUF373 174 lglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyislesv 245
                 l+  +  l+ +ll+lGl +l+ +fgl +l+  ++  +   ++   i + t v+ ll l++g+     +l ++
  EHU02139.1  40 LEEEKANLIQMLLMLGLTMLFTAFGLMSLMVLIIWAVDAQYRLMAIAITTGVLFLLALIFGL----WTLRKS 107
                 444567788899****************8876666666666555555555555555555554....444443 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.8    0.0013       3.9       5      57 ..      56     109 ..      50     121 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
     DUF4131   5 lalvllalllllllllllllrr...rprrrvllllllllllallgfalrapqpnan 57 
                 l  ++ a++l+ l++l+++      ++r   +++ + +l+l++l f l++++++++
  EHU02139.1  56 LTMLFTAFGLMSLMVLIIW--AvdaQYRLMAIAITTGVLFLLALIFGLWTLRKSRQ 109
                 3334444444444444444..44577777778888888888888888888777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1039.60
//
Query:       EHU02140.1  [L=94]
Description: inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-29  100.3   4.7      6e-29  100.1   4.7    1.1  1  YqjK      YqjK-like protein


Domain annotation for each model (and alignments):
>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   4.7   3.4e-33     6e-29       1      73 []      13      85 ..      13      85 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 3.4e-33
        YqjK  1 LlaqieqQRldLaqaaepwekalapvDrgwqtlrslrkhlilvsgllallgvrrPrrllrwlrrglgawstlR 73
                Ll+q++qQRldL++a + w++++ap+Drgw t  sl+++l+++s++la++++r P+rllrw++rg+g+wst+R
  EHU02140.1 13 LLKQVQQQRLDLSAARRGWLEITAPYDRGWFTFLSLKRYLAIGSSALAIYSIRSPNRLLRWAKRGFGLWSTWR 85
                89**********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 734.88
//
Query:       EHU02141.1  [L=136]
Description: putative quinol oxidase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-18   65.9  13.1    3.6e-18   65.9  13.1    1.5  2  DoxX      DoxX
    0.00059   19.8   0.6    0.00059   19.8   0.6    1.9  2  DoxD      TQO small subunit DoxD
     0.0086   15.7   6.1      0.032   13.8   6.1    1.9  1  SURF4     SURF4 family
  ------ inclusion threshold ------
      0.016   15.3   8.2      0.022   14.8   8.0    1.4  1  DoxX_2    DoxX-like family
       0.13   12.5   0.0       0.35   11.1   0.0    1.6  2  YlzJ      YlzJ-like protein
       0.68   10.4   6.3         16    5.9   0.1    2.7  3  DUF1270   Protein of unknown function (DUF1270)
       0.97    9.7   5.2        4.1    7.6   0.2    3.0  3  SpoIIIAC  Stage III sporulation protein AC/AD protein family


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9  13.1   1.4e-21   3.6e-18       1      84 [.       8      87 ..       8      88 .. 0.98
   2 ?   -3.2   0.7       5.1   1.3e+04      54      63 ..     105     114 ..     103     117 .. 0.71

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.4e-21
        DoxX  1 lllllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvh 84
                +ll++R+l+ +lfi +G++k+t  g+egt+ +++a+g+  p +++ l++l+E++ggl++++G+ltR+ Al+ a +++ +++++h
  EHU02141.1  8 GLLAARILMTILFITAGWGKIT--GYEGTQHYMEAMGV--PGFMLPLVILLEFGGGLAIMFGFLTRFTALFTAGFTILTAFLFH 87
                69********************..9*************..*******************************************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.1
        DoxX  54 vgglllllGl 63 
                 ++g +l+lGl
  EHU02141.1 105 IAGGFLVLGL 114
                 5677788887 PP

>> DoxD  TQO small subunit DoxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.29   7.4e+02       4      20 ..      11      27 ..       9      34 .. 0.77
   2 !   19.8   0.6   2.3e-07   0.00059      71     149 ..      51     131 ..      39     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
        DoxD  4 ilRlalgliflsagirk 20
                  R+ ++++f+ ag+ k
  EHU02141.1 11 AARILMTILFITAGWGK 27
                56888888899888865 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.3e-07
        DoxD  71 ftlvEiivGlllliGlltRlsslvafalal..gialsayWlgstcedEyqiglllvaael.vliltgsgklslDylllkklk 149
                 + l+E   Gl ++ G+ltR+++l  +  ++   +++ + + +    +   +  l +a+++ vl l g g +s+D l+ kk +
  EHU02141.1  51 VILLEFGGGLAIMFGFLTRFTALFTAGFTIltAFLFHSNFAEG-VNQLMFMKNLSIAGGFlVLGLVGPGAYSIDRLISKKPQ 131
                 44568999*************9977665441133344555555.4555556677777776145599*************965 PP

>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   6.1   1.3e-05     0.032     185     262 ..      54     124 ..       2     129 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
       SURF4 185 igvaliilvviGfktklaalvLvllLfvlnlvlnafWtipkekelrdflkYdffqtlsviGGLLlvvatGpGelsvDe 262
                 + ++  + ++ Gf t+++al  + +      +l af +  + ++   + +  f ++ls+ GG+L++  +GpG  s+D 
  EHU02141.1  54 LEFGGGLAIMFGFLTRFTALFTAGFT-----ILTAFLF--HSNFAEGVNQLMFMKNLSIAGGFLVLGLVGPGAYSIDR 124
                 33333344556666666665444332.....3444444..355666677788************************96 PP

>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   8.0   8.7e-06     0.022       3      90 ..      13      98 ..      11     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.7e-06
      DoxX_2  3 tvllalffllsGvakllraeevvakfaqlgfpssfvrllGvvellgalgLllplvtaprltplAavglallmvgAiathlrrgdpkav 90
                 +l++++f+++G  k++  e     ++ +g+p  ++ l+ ++e+ g+l+++ ++   +r t l  +g+++l+++ ++++++ g  + +
  EHU02141.1 13 RILMTILFITAGWGKITGYEGTQHYMEAMGVPGFMLPLVILLEFGGGLAIMFGF--LTRFTALFTAGFTILTAFLFHSNFAEGVNQLM 98
                5799*************************************************6..34455555555555555544444555554544 PP

>> YlzJ  YlzJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6     4e+03      52      63 ..      35      46 ..      34      48 .. 0.82
   2 ?   11.1   0.0   0.00014      0.35      22      52 ..     101     131 ..      90     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
        YlzJ 52 ndYLnpelaPGq 63
                ++Y+++   PG 
  EHU02141.1 35 QHYMEAMGVPGF 46
                799999999995 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00014
        YlzJ  22 kevevngvpllvekveegqyrIvRllStdPn 52 
                 k +++ g+ l++  v++g y I Rl+S  P+
  EHU02141.1 101 KNLSIAGGFLVLGLVGPGAYSIDRLISKKPQ 131
                 678999*********************9997 PP

>> DUF1270  Protein of unknown function (DUF1270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0063        16      19      37 ..      12      31 ..       8      38 .. 0.82
   2 ?    5.7   2.1    0.0078        20      18      48 ..      60      89 ..      49      92 .. 0.74
   3 ?   -2.3   0.0       2.4   6.1e+03      26      36 ..      97     107 ..      96     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0063
     DUF1270 19 aivlmPllyfttaWs.iaGf 37
                a +lm +l+ t+ W  i+G+
  EHU02141.1 12 ARILMTILFITAGWGkITGY 31
                679***********547776 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0078
     DUF1270 18 laivlmPllyfttaWsiaGfasivtfifyke 48
                lai+   +l   ta   aGf+ + +f+f+ +
  EHU02141.1 60 LAIM-FGFLTRFTALFTAGFTILTAFLFHSN 89
                5554.456666678899***********865 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
     DUF1270  26 lyfttaWsiaG 36 
                 l f    siaG
  EHU02141.1  97 LMFMKNLSIAG 107
                 56777889997 PP

>> SpoIIIAC  Stage III sporulation protein AC/AD protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0016       4.1      28      51 ..      52      75 ..      50      76 .. 0.92
   2 ?   -0.1   0.1      0.41   1.1e+03       5      14 ..      76      85 ..      75      87 .. 0.88
   3 ?    2.9   0.1      0.05   1.3e+02      30      44 ..     103     117 ..      98     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
    SpoIIIAC 28 slielagkiiilllalpllsalfe 51
                +l+e++g+++i++  l +++alf 
  EHU02141.1 52 ILLEFGGGLAIMFGFLTRFTALFT 75
                589*******************96 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.41
    SpoIIIAC  5 agigiiaall 14
                ag++i++a+l
  EHU02141.1 76 AGFTILTAFL 85
                899****998 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.05
    SpoIIIAC  30 ielagkiiilllalp 44 
                 +++ag+ ++l l+ p
  EHU02141.1 103 LSIAGGFLVLGLVGP 117
                 79********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1106.73
//
Query:       EHU02142.1  [L=207]
Description: cytochrome b family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-07   31.1  17.4      2e-07   30.8  17.4    1.0  1  Ni_hydr_CYTB  Prokaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8  17.4   1.1e-11     2e-07       4     170 ..      15     180 ..      12     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.1e-11
                   --TTHHHHHHHHHHHHHHH.HHHHHHS------S-GGG-.HHHH.HHHHHHHHHHHHHHHHHHH.....------------STTTSSSSS------- CS
  Ni_hydr_CYTB   4 lvarllHWlnallvvllll.sgllianlhprlywgdsgk.aral.HklaGlvllalllfrllwl.....kkakkpspriifrqikrdltlllrgrkp 92 
                    + r lH ++a+ ++ +++ sg+    +++++  g+s + ++++ H+l Gl+l++  +++l+w+      + ++++    fr i++dl+ l r + p
    EHU02142.1  15 PFFRRLHLFVAVHILSQIInSGF----TEREALGGHSLEtVITWfHILSGLLLIVAGFAMLIWMrmqrgLHWYFSWLTLDFRGIRDDLACLARMKLP 107
                   5789***************6666....555555555555568888**************************************************** PP

                   ---------TTTHHHHHHHHHHHHHHHHHHHTHHHHHHHH...HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
  Ni_hydr_CYTB  93 eagknnplqklvhlllyvllvvliltGlllsfaatagfplllddkggaqlarelHellaaallafvvlHiaaallhgp 170
                   +a+ + + +   ++l + +l+v++ +G l++  + + f     + g+ +++  +H +l+ ++ +++  H a+ +lh +
    EHU02142.1 108 DAHSGGIAATV-QGLGVSALLVVACSGALWFLLNSTSF----ASPGLTHAVLHWHRFLTTFVEIYFYSHGAMGVLHIL 180
                   *9999888776.8888888899999**99866333333....479**********88888888************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1542.46
//
Query:       EHU02143.1  [L=230]
Description: VIT family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-51  175.4  16.2    1.7e-51  175.2  16.2    1.0  1  VIT1       VIT family
     0.0037   17.3   8.3      0.011   15.8   5.6    2.2  2  SpoIIM     Stage II sporulation protein M


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2  16.2   1.9e-55   1.7e-51       1     214 [.      15     222 ..      15     223 .. 0.92

  Alignments for each domain:
  == domain 1  score: 175.2 bits;  conditional E-value: 1.9e-55
        VIT1   1 lrdavlGanDGLvspfalvaGlsaaslgssktvllaGlaellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpeegeaeelaeilearglseel 99 
                 lr+avlGanDG+vs+++l aG+++as + ++tvllaGla+++ Ga+SM+ GeY+sv+s++d+e+a++++e++ele+d   +e  el++i++argls++l
  EHU02143.1  15 LRAAVLGANDGIVSTASLLAGVVSAS-SAPHTVLLAGLAGIVGGAMSMATGEYVSVSSQSDSEQASLQQEKAELEADF-AAETVELTAIYQARGLSADL 111
                 79*********************999.59*************************************************.67779*************** PP

        VIT1 100 aqevaaellknpdallelmlreelgpsaseelasplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkalltgssklvsalr 198
                 a++ +ae+l+++da l++++r+elg+++  + a+pl+aAl sa+sf+ G+++P + +l+++ +  al + ++ +llal+l+Ga+ a+++++++++s++r
  EHU02143.1 112 AHQ-VAEQLMAHDA-LAAHARDELGITDF-SSAKPLQAALFSAISFASGSVLPFAVALLIT-GPFALPAIALSALLALALLGALAAKAGDAPVRKSIMR 206
                 ***.5566666788.799*******8863.4468************************999.66666666677************************** PP

        VIT1 199 mlliGalAaaaaylig 214
                   ++ +lA+  +  +g
  EHU02143.1 207 ICFWSLLAMSFSATVG 222
                 *********9998887 PP

>> SpoIIM  Stage II sporulation protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.021   1.8e+02      72     120 ..      18      74 ..      11     124 .. 0.63
   2 !   15.8   5.6   1.2e-06     0.011      78     146 ..     150     218 ..     143     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.021
      SpoIIM  72 fvlGavaalvaef.gglllflllilPhgi.lelpaiiiagaaglrlgkal......r 120
                 +vlGa  ++v++       + ++ +Ph + l   a i++ga+++  g ++       
  EHU02143.1  18 AVLGANDGIVSTAsLLAGVVSASSAPHTVlLAGLAGIVGGAMSMATGEYVsvssqsD 74 
                 555544444444433344566667777662334566666666666666665544431 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.2e-06
      SpoIIM  78 aalvaefgglllflllilPhgilelpaiiiagaaglrlgkalrsrrkalkeakrellklllllvp.llli 146
                 +a+ +  g++l f++++l+ g + lpai +++ ++l l  al  ++   +  +++++++++++++ + + 
  EHU02143.1 150 SAISFASGSVLPFAVALLITGPFALPAIALSALLALALLGAL-AAKAGDAPVRKSIMRICFWSLLaMSFS 218
                 445555599*****************************8888.3455566699**********9955444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1978.26
//
Query:       EHU02144.1  [L=306]
Description: UDP-glucuronic acid decarboxylase / UDP-4-amino-4-deoxy-L-arabinose formylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-24   86.4   0.0    2.6e-24   85.9   0.0    1.2  1  Formyl_trans_N  Formyl transferase
    1.1e-19   70.5   0.0    1.7e-19   69.9   0.0    1.3  1  Formyl_trans_C  Formyl transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   2.9e-28   2.6e-24      64     178 ..      60     174 ..      24     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 2.9e-28
                     CCCCCHHHHHHHHCTT-SEEEEES--S---HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--T CS
  Formyl_trans_N  64 rsqfeeelaeelkelkadlivlagymkllpkelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiia 158
                     +++   e ++ ++++ ad+  + +y ++l++++++ v +++ n+H +LLP+++G a  ++++++G++ tGvt h +  + D G+ilaq++v+i++
      EHU02144.1  60 EELNTAEWQARIASFDADYLFCFSYRQVLSEAILSSVTKGAYNVHAALLPAYRGRAHLNWVIIKGETRTGVTLHRMIKRPDAGPILAQQAVDILP 154
                     56778899*************************************************************************************** PP

                     T--HHHHHHHHHHHHHHHHH CS
  Formyl_trans_N 159 edtkeeleqrvadaehkalv 178
                     ed +  l  r+     k+l+
      EHU02144.1 155 EDNALALHTRLVATTGKMLP 174
                     ********999888877776 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.9e-23   1.7e-19       3      96 ..     202     293 ..     201     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.9e-23
                     -GGGGB--TTSBHHHHHHHHHHT-.TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEEEEEEEEETTS--EEHHHHH CS
  Formyl_trans_C   3 kkedgridwnqsaeeihnlvrgls.pwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgallilelqlegkkamsaedfl 96 
                     k+edg+i w++sa +ihnlvr+l+ pwPga+ +++ +r+ +++++v + ++s+   G++v+++   l++ cg+g l+il+ q ++++ +s++ ++
      EHU02144.1 202 KPEDGEIHWQDSAVNIHNLVRALDfPWPGAFSFTRTQRFTVWQTRVMNGDNSGR-AGEVVSLS--PLIIRCGQGQLEILQGQGPDGESVSGRVLA 293
                     68**************************************************99.******98..68****************999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.32
# Mc/sec: 2870.75
//
Query:       EHU02145.1  [L=324]
Description: putative S-transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-23   82.6   0.0    4.9e-23   81.2   0.0    1.8  2  GST_N_2   Glutathione S-transferase, N-terminal domain
    1.4e-12   47.5   0.1    2.7e-12   46.5   0.1    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    1.2e-05   25.4   0.0    1.8e-05   24.9   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    6.8e-05   23.2   0.0     0.0014   19.0   0.0    2.3  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    0.00018   21.7   0.0    0.00034   20.7   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.4e-26   4.9e-23       1      69 [.      62     158 ..      62     159 .. 0.87
   2 ?   -3.6   0.0         4   1.4e+04      47      55 ..     173     181 ..     168     190 .. 0.65

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.4e-26
                 S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHH..........................HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvvvlepkgfekseef..........................prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                 aCPwahR+l++++lkgle+ i+v+v  p   e++++f                          +++++r+tVPvLwdk+++  v neS++I+r++++
  EHU02145.1  62 ACPWAHRTLLMRQLKGLENMIDVSVVHPLMLENGWTFddsfpaatgdklhqneflyqlylhadKDYTGRVTVPVLWDKQQNtiVSNESADIIRMFNS 158
                 7**********************855555555555555555************************************96667999**********98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
                 SEEE-CTTE CS
     GST_N_2  47 PvLwdkdgq 55 
                 P+L dk   
  EHU02145.1 173 PALRDKIDD 181
                 899998544 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   7.6e-16   2.7e-12       1      57 [.     203     259 ..     203     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 7.6e-16
                 HHHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS---- CS
     GST_C_2   1 eaaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdir 57 
                 +aa+++a+++l+++l+ le++L+++++l Gd++t aD +l+++lvr++ ++  +  +
  EHU02145.1 203 QAAYDEAVTALFQSLSRLEQILGQHRYLTGDTLTEADLRLWTTLVRFDPVYVTHFKC 259
                 699***********************************************9876544 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.9e-09   1.8e-05      18      65 ..     200     247 ..     151     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.9e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpiln 65 
                 +++++++dea ++++ +ls+le  l ++ yl Gd lt AD+ l + l 
  EHU02145.1 200 ATSQAAYDEAVTALFQSLSRLEQILGQHRYLTGDTLTEADLRLWTTLV 247
                 7899************************************97766554 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.9e-07    0.0014       1      73 [.      57     162 ..      57     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.9e-07
                 EES-TTSHHHHHHHHHHHHHT--....EEE.E---.........................TTTTHHHHHHH-TT--SSEEETT..S-.EEESHHHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglp....vev.vevt.........................pgehdeellaknplgkvPvLedd..ge.altdSlaIidy 66 
                 Ly + a+p+a r  l+ ++kgl+    v v ++++                         ++    + + ++++ +vPvL d   ++ +  +S++Ii+ 
  EHU02145.1  57 LYVSLACPWAHRTLLMRQLKGLEnmidVSVvHPLMlengwtfddsfpaatgdklhqneflYQLYLHADKDYTGRVTVPVLWDKqqNTiVSNESADIIRM 155
                 99********************75543333144448999999999999999998888777677777778888********76622445677*******9 PP

                 HHHHH-G CS
     GST_N_3  67 Leelypg 73 
                 + ++++g
  EHU02145.1 156 FNSAFDG 162
                 9999875 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.6e-08   0.00034      26      94 ..     210     285 ..     182     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.6e-08
                 HHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.....TCC....CC-HHHHHHHHHHHTSHHHHH CS
     GST_C_3  26 eerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.....eal....kkfpklkalyervearpkika 94 
                  + l + l+++e++l   +  yl gd+lT ADl l++ l  +  +     +++    +++ +l  +   + + p+i++
  EHU02145.1 210 VTALFQSLSRLEQILG--QHRYLTGDTLTEADLRLWTTLVRFDPVyvthfKCDrhriSDYLNLSGFLRDIYQMPGIAE 285
                 4455566788888888..888****************99999988888883334456888999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2432.30
//
Query:       EHU02146.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-99  332.9   2.7    1.9e-98  329.4   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.4e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
      9e-12   45.6   8.5    1.9e-11   44.6   8.5    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.016   15.0   5.4      0.024   14.4   5.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.018   14.2   1.5      0.035   13.3   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.021   15.1   4.1      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   12.8   6.9      0.055   12.0   6.9    1.4  1  FUSC             Fusaric acid resistance protein family
      0.046   13.3   1.8      0.064   12.8   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.048   13.4   2.0       0.33   10.6   0.4    2.2  2  LXG              LXG domain of WXG superfamily
      0.078   12.2   0.6       0.13   11.5   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.13   12.6   2.9       0.34   11.3   2.9    1.7  1  HalX             HalX domain
        0.2   11.4  11.0       0.33   10.7  11.0    1.2  1  ERM              Ezrin/radixin/moesin family
       0.33   11.0   4.9        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.44   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.62   10.4   5.4        1.3    9.3   5.4    1.5  1  OmpH             Outer membrane protein (OmpH-like)
       0.78    9.3   7.3        1.7    8.2   7.3    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        1.3    9.2   8.0       0.58   10.3   4.9    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        1.9    8.8   6.9        0.3   11.4   1.2    2.4  2  ABC_tran_CTD     ABC transporter C-terminal domain
        8.7    7.0   8.7    1.5e+03   -0.1   8.7    3.1  1  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.1     0.066        56     168     228 ..      35     110 ..      21     122 .. 0.49
   2 !  329.4   0.0  2.2e-101   1.9e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.066
  DDE_Tnp_IS66 168 qaaaealarigklyaierearea..................eaeerlalrqeesrpllaeleawleeqlkkvlpksklg 228
                   q++a   ++i++l+a+ ++++++                  eaeer ++ qee +++l el++     l++ l++s ++
    EHU02146.1  35 QRVAAYASEINRLKALVAKLQRMqfgksseklrektarqvrEAEERISALQEEMAEVLGELHD---PALPQPLRQSSAR 110
                   555555566666666666665323333222222112222223455555555555555555555...2335555555555 PP

  == domain 2  score: 329.4 bits;  conditional E-value: 2.2e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02146.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02146.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02146.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02146.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5     4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02146.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   8.5   2.2e-14   1.9e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 2.2e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU02146.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGElhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************9666555555556667778888888888889999*********************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   5.4   2.9e-05     0.024     114     195 ..      10      95 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveey 195
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e 
  EHU02146.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEL 95 
                 578888777777765557777889**************9862678999**********************************9986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.5   4.1e-05     0.035      47     106 ..      34      90 ..      25      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02146.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      71 .. 0.81
   2 ?    2.8   0.4      0.18   1.5e+02      33      53 ..      71      91 ..      68      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02146.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02146.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.5e-05     0.055     213     294 ..       4      89 ..       1     124 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.5e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU02146.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********877775556666666666666666666666554 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   7.5e-05     0.064     144     223 ..      10      99 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k........e 223
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +        +
    EHU02146.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgelhdpA 99 
                   3344455555555556666667778999999999998888665543999999************************88844444333330 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02146.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    2.3   0.1      0.14   1.2e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02146.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU02146.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                 56788888899999999999999999999988777 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   0.00015      0.13      24      75 ..      37      90 ..      33      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkke 75
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e
  EHU02146.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAE 90
                578***************55553233356667777888889999*******987 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.9   0.00039      0.34       2      60 ..      37      97 ..      36     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00039
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l el d
  EHU02146.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGELHD 97
                789*****************************8752277888***************9876 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  11.0   0.00038      0.33      17      99 ..       5      89 ..       3      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
         ERM 17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeese 99
                + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ 
  EHU02146.1  5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMA 89
                66888999999**********************************999999887335577789*******************986 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    4.0   1.0     0.062        53      22      38 ..      74      90 ..      73      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02146.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.062
     DUF1192 22 veELeerIalLeaEIaR 38
                v E eerI++L++E a 
  EHU02146.1 74 VREAEERISALQEEMAE 90
                67889*********885 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02146.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.7   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02146.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02146.1 167 ACCSCDHI 174
                  35555554 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.4    0.0016       1.3      10      85 ..      15      90 ..      11     104 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0016
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqk 85
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ +     ++e+++
  EHU02146.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISA----LQEEMAE 90
                6777777888899999999*********************965544.23344444444445555555555....3333332 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.3     0.002       1.7      70     152 ..      13      97 ..       2     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.002
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL +l +
    EHU02146.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGELHD 97 
                   55666777777777777777777788899999999999999998874477888899************************99987 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.9   0.00068      0.58      45     141 ..      11     115 ..       6     117 .. 0.72
   2 ?   -1.5   0.0       2.9   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00068
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshiqsLPdLtelpd...vtg 134
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  L d + lp+    ++
  EHU02146.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLGELHDPA-LPQplrQSS 108
                 56788999999999999999999999888777777777765414556666655554111116688888999999999999999998855.888777788 PP

       CREPT 135 glapLPs 141
                 + +pLP 
  EHU02146.1 109 ARKPLPA 115
                 8899996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU02146.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4       2.1   1.8e+03      43      51 ..      37      45 ..       7      60 .. 0.43
   2 ?   11.4   1.2   0.00035       0.3       1      37 [.      65     101 ..      65     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.1
  ABC_tran_CTD 43 laelsaele 51
                  +a+   e++
    EHU02146.1 37 VAAYASEIN 45
                  222222222 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpely 37 
                   kl  k  r+  e e++I aL+ee+ae+  el dp+l 
    EHU02146.1  65 KLREKTARQVREAEERISALQEEMAEVLGELHDPALP 101
                   788899999*************************974 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   8.7       1.7   1.5e+03      22      53 ..      12      43 ..       8     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.7
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02146.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                66778899999999999999999999776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                     1043  (0.0581739); expected 358.6 (0.02)
Passed Vit filter:                       155  (0.00864521); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 3282.37
//
Query:       EHU02147.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02147.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 864.58
//
Query:       EHU02148.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   34.3   0.0    3.1e-08   33.8   0.0    1.3  1  HTH_Tnp_1  Transposase


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.7e-12   3.1e-08      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.7e-12
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr y++g++a+   
  EHU02148.1  2 QPGVSVAQLARENNINDNLLFNWRRFYQQGLLAARTD 38
                89**************************998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 781.19
//
Query:       EHU02149.1  [L=536]
Description: glucans biosynthesis protein D [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-177  591.7   0.0   1.3e-177  591.5   0.0    1.0  1  MdoG        Periplasmic glucan biosynthesis protein, MdoG
  ------ inclusion threshold ------
      0.021   14.7   0.7      0.021   14.7   0.7    1.8  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  591.5   0.0  1.5e-181  1.3e-177       1     477 []      40     519 ..      40     519 .. 0.97

  Alignments for each domain:
  == domain 1  score: 591.5 bits;  conditional E-value: 1.5e-181
                 --HHHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BTTTSSSS-EEEEEE-BTTB-S-BEEEEE-SS-EEE----GGGEE-TTS--- CS
        MdoG   1 FsfetvkekaralaakpyaapeeelpealakldydqyrkirfrpekalwkeeklpfevqffhlgllfkepvkinevedgkareiaydpslFdygkekka 99 
                 F+f+t++++a+alaakpy++p+   p+ l++++yd+y k  ++pe al+k+ + +f v+ff    l++ pvk+++ve+++arei  + ++F++++++ +
  EHU02149.1  40 FNFQTLIARAKALAAKPYEKPTGFDPSLLSNITYDAYMKTVYKPEYALFKNAG-RFPVTFFMVNGLHRMPVKMHVVENNAAREIIQNIDYFTTTDKSVR 137
                 89***********************************************9997.9*****************************************999 PP

                 TTTSTT--EEEEEEEEECC..ETTEEEEEEEEESTTEEEE--TT-----EEES-EESTT-TT-.-B--EEEEEEEE---TT---EEEEEEEEETTEEEE CS
        MdoG 100 kelpkdlgfaGfrlhapln..keevkdellvflGASYFRavgkgqqyGlsARglaidtaepkg.EeFPaFtefwlerpakeaksltvyAlLdspsvtGa 195
                   + +   f+Gfr+ a+ +  k++ ++++++f+GASYFRa+g+  q+GlsARg+a++t +p   EeFP+Ft+fw+e p++++k+ltvyAlL++ps+tGa
  EHU02149.1 138 LPALEGNVFSGFRVLASQDalKTNPQNDWISFMGASYFRAIGELGQFGLSARGIALNTVQPGVdEEFPDFTDFWFEAPKDDSKNLTVYALLNGPSITGA 236
                 99999999*******9999444677************************************999*********************************** PP

                 EEEEEE-SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEEEES--EEEEE--- CS
        MdoG 196 yrfvirpgeetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfadenpkGFGLlqrd 294
                 y+f +++g+ +v+dve+tlflRkd++++GiapltSm++f+++ +  a+d+rpevhDsdgL+++tg+ge++wRpLnnp ++ +ssf+denp+GFGLlq+d
  EHU02149.1 237 YKFILHRGKGVVQDVECTLFLRKDIQRFGIAPLTSMYWFSKTVKGAATDWRPEVHDSDGLAMWTGSGEHLWRPLNNPLRVVTSSFHDENPRGFGLLQKD 335
                 *************************************************************************************************** PP

                 --GGGT--TTT-GGG--EEEEEESS---EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGGT.TSBEEEEEEEEESST.T-T CS
        MdoG 295 refesYqDlearYekRPslwvepkgdwgkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepkaeeplarvvatrvgkgee.kke 392
                 r+f+sY D  a+Ye+RP lwvep g+wgkG+v+LveiptddE+ DNiva+Wvp++p+kag+e++f+Yrl+w ++ep  +++lar+ atr g+g +  ++
  EHU02149.1 336 RNFDSYLD-AAHYERRPDLWVEPLGKWGKGSVQLVEIPTDDEIYDNIVAMWVPDAPAKAGDEHHFHYRLHWLSDEPY-PSTLARCGATRLGRGGVpGSD 432
                 ********.89*****************************************************************9.789***********9773455 PP

                 T--SEEEEEEEEE-TTGGGS-T--.-EEEEEE-TTEEEEEEEEEETTT.TEEEEEEEEEES-TS-EEEEEEEEETTCEEEEEEEEEE CS
        MdoG 393 krkeskkfvvdfegealekleeee.veaevtasageivessvernpet.kgwrlvfdlepedeepvelravLkkgekalsetwlyqw 477
                 + ++s+kf+v+f+g++l++l++    ea+++as+g+++++ v+++p+  ++w ++fdl ++d +pvel+++Lk++e+ +setw yq+
  EHU02149.1 433 RPHDSRKFTVEFHGGNLNHLPSGVaPEAVLSASRGTFENVLVSKLPDDsGNWLAQFDLVAGDGDPVELKLYLKAQENVVSETWCYQY 519
                 558999***************7766********************996599*********999**********************97 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.7   2.4e-06     0.021       1      23 [.       1      24 [.       1      27 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-06
  TAT_signal  1 klSRRdFLKgsAAaaAAaalg.gc 23
                +++RRd+L  s+A aA+ alg ++
  EHU02149.1  1 MVTRRDLLTYSGAFAALSALGiSP 24
                68******************9444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4414.54
//
Query:       EHU02150.1  [L=286]
Description: tetrapyrrole methylase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-27   96.5   0.3    3.2e-27   95.9   0.2    1.4  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.2   1.8e-31   3.2e-27       1     204 [.      13     205 ..      13     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 1.8e-31
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllv.sGDPlvygtg 96 
                   +ly+V +++G+ +++T+rAl++l ++d+v+++d+r++ +ll++ a        +++    ++ + ++ a++l ++l++g+ ++l++ +G Pl+ ++g
    EHU02150.1  13 TLYIVPTPIGNLADITQRALAVLSSVDLVAAEDTRHTGLLLQHFAI-------NARLFALHDHNEQQKADILLARLQQGESIALVSdAGTPLINDPG 102
                   69*******************************9999999987653.......3333333444455556666************************* PP

  TP_methylase  97 selvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprk.laelaelLkealyddttpva 192
                    +lv+++r+  agi++  +PG +++ +a +++g+p + +++   +l p++ k + + l+al+++++tl++++++++ l++l +   e   + ++ v+
    EHU02150.1 103 YHLVRRCRE--AGIRIVPLPGACAAITALSAAGLPSD-RFCYEGFL-PAKTKARCDALRALADEPRTLIFYESTHRlLDSLQDMVTEL--GADRYVV 193
                   *********..************************88.77777777.888889999*******************9677777777777..6678*** PP

  TP_methylase 193 vveragtederv 204
                   ++++++++ e +
    EHU02150.1 194 LARELTKTWENL 205
                   *****9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2083.76
//
Query:       EHU02151.1  [L=679]
Description: putative lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-136  455.2  37.3    2.6e-91  307.1   4.6    2.0  2  LppC      LppC putative lipoprotein
  ------ inclusion threshold ------
      0.054   13.7   1.8       0.13   12.5   0.5    2.3  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      0.093   13.3  18.1        0.4   11.2   2.9    3.5  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> LppC  LppC putative lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0  26.4   2.1e-48   1.3e-44       4     248 ..      43     285 ..      40     319 .. 0.94
   2 !  307.1   4.6   4.3e-95   2.6e-91     228     535 .]     328     673 ..     289     673 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.0 bits;  conditional E-value: 2.1e-48
                 --S-HHHHHHTCTT--SHHHHHHHHHHHHHHHHTT-HHHHHHHHHT--..S--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHTS-GGGS-HHHHHHHHH CS
        LppC   4 pnasaeqylakasqsqgeeqntykllAarvlieenkiaqaqallrelavqeLtdeqkldkslleaelaaakeqneeAlqqlslqslssLspsqksryye 102
                 +  ++  yl++++qs+++ + +++llA+r+l +e+k +qa+  + el+ ++L  +q+ +  ll+a+ ++ +++   A+q ls  + s+Ls+ q +ryy+
  EHU02151.1  43 ATNNSAYYLQQMQQSSDDSKTDWQLLAIRALLKEGKYPQADQAIGELP-NQLSSTQQQELRLLKAQSLIGQQKVADAQQLLSQVKTSELSQDQLARYYD 140
                 6788999*****************************************.9************************************************* PP

                 HHHHHHHHT.T-HHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHS-HHHHHC.---TT-HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHSTTSH CS
        LppC 103 lraailear.kdaleavkerieldqllsdvkakqenqdkiwallrsldagvlnn.aaeegeaaLsgwltLarllktlesqpaqlkqslesWkaeyPehp 199
                 l+  i+ a+ k +l+  ++ i+ ++ll+ + a+q+n+d++w+ l +l+++ +n    +++e+ L+gwl L  + + + ++ + lk +++ W+++yP+ p
  EHU02151.1 141 LQ--IASAQgKTSLALLRAYIAQEPLLK-GDARQKNIDATWQALTQLSQQDMNAlVINADENILQGWLDLLTAWHANAQDANMLKSAIKDWQTRYPDNP 236
                 96..5555515689999***********.5************************9999***************************************** PP

                 HHHS--HHHHHHHT--------EEEEE--SSTTHHHHHHHHHHHHHHH. CS
        LppC 200 aakllPkaltdllnlqqtkltkvalLLPlsGklakvaetirdGFlaakd 248
                 a+k lP++l ++ n+ +   + +alLLPl+G++++ a++i++GF++ak+
  EHU02151.1 237 ASKTLPTQLSQVQNFTKASTSTIALLLPLNGQAQMFASAIQKGFNDAKN 285
                 ***********************************************93 PP

  == domain 2  score: 307.1 bits;  conditional E-value: 4.3e-95
                 -SSTTHHHHHHHHHHHHHHH....TT--S-EEEEETTTS-HHHHHHHHHHTT--EEE---SHHHHHHHHHSGG.GTTSEEEES---TT---BTTEEE-- CS
        LppC 228 lsGklakvaetirdGFlaak.daetqsnaqvkvfDtaaeslediyaqakaagidlvVGPLlkqnvdkllaqeqlvqsidvLaLNssdnsraiaqlcyfg 325
                 ++G +++ a+t ++  ++ +  a+  sn+qvkv+Dt+++++ ++++qa+++g+ lvVGPLlk+nv+++++++    +++vLaLN ++ ++  +++cyf+
  EHU02151.1 328 QTGTAQQPATTAQQPQQQQQpSAQPASNVQVKVYDTSSQPIAQVIQQAQQDGATLVVGPLLKNNVETVANSQT---PLNVLALNEPEHIQNHPNMCYFA 423
                 68888888888888888877788999*****************************************987765...5********************** PP

                 --HHHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHHHHHHHHSS--EEEEESSGGGHHHHHH................................ CS
        LppC 326 LspEdeaesaAsklwadgvRnplvlvpqndlGrRvveAFnerwqqlagtdaaielvdqpadlaqqlk................................ 392
                 LspEdea+ aA+++w +g R+pl l p+n lG+Rv+ AF ++wq+l+g  +  + ++   +l+q ++                                
  EHU02151.1 424 LSPEDEARDAAHHIWDQGKREPLLLLPRNGLGDRVATAFAKEWQSLGGGTVLQQRFGSVSELKQGINsgagismsgtpvvipsasqpqnvsvagltipa 522
                 *************************************************************************************************** PP

                 .......HH-.TTTEEEEE---HHHHHHHHHHHHT...T-TTEEEEE-GGG--HHT-HHHHHHTTT-EEEE-GGGG-SSSHHHHHHH.HHTTT-HHHHH CS
        LppC 393 .......dasrqdidavyivanskelaeikptlana..sakdlklyasSrsvsgntkpeqdedlngiqfsdiPflvdpassikkkvaaklpeaegsllr 482
                         +++  +da yiv +++el+ ikp++ +   s  +++lyasSrs  +  +p+++ +++g+q+sdiP+l   ++   ++ a ++ ++++sl+r
  EHU02151.1 523 pqtsapaASESGAVDAAYIVSTQDELQLIKPMISMRtgSRSNVALYASSRSAQAGAGPDFRLEMEGLQYSDIPLLSGANPGLMQQAA-RSFNNDYSLVR 620
                 *****98666678*********************99888899*******************************************99.*********** PP

                 HHHHHHHHHHHHTTHHHHHHSTT--EEETTEEEEE-TT-BEEEE-EEEEEETT CS
        LppC 483 LyAlGvDAyrLivelnelkavpgytidGlTGtLsldencnveRdltWaeyrnG 535
                 LyA+G+D + L++++n++++vpg+ +dG TG+Ls+ ++c+++R+ltW +yr+G
  EHU02151.1 621 LYAMGMDTWTLANHFNQMRQVPGFSLDGNTGKLSATPDCVINRKLTWNQYRQG 673
                 ***************************************************98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   2.2e-05      0.13      15      80 ..      54     123 ..      43     125 .. 0.81
   2 ?   -1.7   0.0      0.59   3.5e+03       8      39 ..     157     189 ..     154     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                 HH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-H..HHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  15 llaaetespedayll.AlclylngqykrAyellrka.klnsksl..gcrylfAqcllkLkkyeeAiaaLe 80 
                 +++++ +s  d  ll   +l++ g+y +A + + ++ ++ s+++  + r+l+Aq+l+ ++k+ +A ++L+
  EHU02151.1  54 MQQSSDDSKTDWQLLaIRALLKEGKYPQADQAIGELpNQLSSTQqqELRLLKAQSLIGQQKVADAQQLLS 123
                 444555555565666479******************999999988899*****************99987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.59
                 HHHHHHHHH..HHH--HHHHHHHHHHHHHTT-H CS
      ANAPC3   8 Aiflaerlla.aetespedayllAlclylngqy 39 
                 A++  e+ll+   ++ + da + Al+ +++++ 
  EHU02151.1 157 AYIAQEPLLKgDARQKNIDATWQALTQLSQQDM 189
                 55566777765667788899999*999999875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.9   6.7e-05       0.4      13      67 ..      50     107 ..      44     108 .. 0.79
   2 ?    8.5   4.4   0.00048       2.9       1      57 [.     109     164 ..     109     174 .. 0.90
   3 ?   -2.7   0.0       1.5   9.2e+03      11      27 ..     218     238 ..     212     254 .. 0.72
   4 ?   -3.8   0.0         3   1.8e+04      34      53 ..     420     439 ..     420     444 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.7e-05
      TPR_19  13 lleqalqedpk..naearllLAeallalgqldeAealLdalpeedpd..daryasLlAk 67 
                 +l+q+ q++ +    + +ll ++all+ g + +A +++ +lp++     +++++ L+A+
  EHU02151.1  50 YLQQM-QQSSDdsKTDWQLLAIRALLKEGKYPQADQAIGELPNQLSStqQQELRLLKAQ 107
                 67886.444443688888889**********************9988533666677776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00048
      TPR_19   1 llaegdyaeAlalleqa.lqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 l+ +++ a+A++ll+q+  +e  +++ ar+   ++++a+ q +   alL a+ +++p 
  EHU02151.1 109 LIGQQKVADAQQLLSQVkTSELSQDQLARY--YDLQIASAQGKTSLALLRAYIAQEPL 164
                 689*************97799999999999..*****************999999885 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
      TPR_19  11 lalleqalqe....dpknaea 27 
                 +++l++a+++    +p+n++ 
  EHU02151.1 218 ANMLKSAIKDwqtrYPDNPAS 238
                 677888886666668888765 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 3
      TPR_19  34 allalgqldeAealLdalpe 53 
                 +++al   deA+++   +++
  EHU02151.1 420 CYFALSPEDEARDAAHHIWD 439
                 88888888999887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 4399.12
//
Query:       EHU02152.1  [L=131]
Description: uncharacterized UPF0102 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-25   87.5   0.1    6.2e-25   87.2   0.1    1.1  1  UPF0102          Uncharacterised protein family UPF0102
  ------ inclusion threshold ------
      0.019   15.4   0.0      0.023   15.1   0.0    1.2  1  NERD             Nuclease-related domain
       0.12   12.0   0.0       0.17   11.5   0.0    1.2  1  Anemone_cytotox  Sea anemone cytotoxic protein


Domain annotation for each model (and alignments):
>> UPF0102  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.1     1e-28   6.2e-25       1      79 []      23     115 ..      23     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1e-28
                 HHHHHHHHHHHTT-EEEEEEEEETTEEEEEEE..TTEEEEEEEEE-......-------HHHHHHHHHHHHHHH............EEEEEEE CS
     UPF0102   1 gEelaaeyLekkgyeilernwrcragEiDiia..tevlvfvEVKtRssekfgspaeavtprKqrrlrraaeayl............rfDvvav 79 
                 +E++a++yLe++g++ ++ n+ +ragE+D+i+  ++++vfvEV++R++++fg  ++++t++Kq++l raa+++l            rfD++a+
  EHU02152.1  23 YEQRARRYLERAGLTWVASNVYYRAGELDLIMrdNQCWVFVEVRYRRNARFGGSLASITRQKQHKLLRAASLWLaqrggsfetvncRFDIIAI 115
                 59********************************99*******************************************************97 PP

>> NERD  Nuclease-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.9e-06     0.023       2      62 ..      20      76 ..      19     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.9e-06
        NERD  2 gaegEravakeLkelked.eylvlhdvrlrpgtgeiDhlvispkgifv.iEvKnwsGwifgdk 62
                gae E+++ ++L+  +++  ++  ++v++r g  e+D+++  ++ ++v +Ev +++   fg +
  EHU02152.1 20 GAEYEQRARRYLE--RAGlTWV-ASNVYYRAG--ELDLIMRDNQ-CWVfVEVRYRRNARFGGS 76
                8999*********..8896666.******888..****999999.5555*****998888772 PP

>> Anemone_cytotox  Sea anemone cytotoxic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.17      38      60 ..      33      55 ..      29      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                     ESSS-EEEEEEEECCSBSSS-S- CS
  Anemone_cytotox 38 esgktwtalntyfrsgtsdvvlp 60
                      +g tw a n y+r+g  d+++ 
       EHU02152.1 33 RAGLTWVASNVYYRAGELDLIMR 55
                     579****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1050.64
//
Query:       EHU02153.1  [L=195]
Description: DnaA initiator-associating factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-33  114.6   1.6      4e-33  114.4   1.6    1.1  1  SIS_2     SIS domain
    4.7e-07   29.7   0.6    3.3e-06   27.0   0.0    2.4  3  SIS       SIS domain
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.032   13.8   0.0    1.2  1  HobA      DNA replication regulator


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   1.6   6.6e-37     4e-33       2     138 .]       9     144 ..       8     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 6.6e-37
                 HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST....THHHHHTT-TTHHHHHHHH CS
       SIS_2   2 YlaevteilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda..eatkssalerdegyakqilrl 98 
                 ++++++  ++++ e+  +ai +aa ++++sl ng+k+l +G+G S+a+a+++aa +++++e+er+ lpalal++d    +++s++   de yakq+++l
  EHU02153.1   9 FTESIQTQIAAA-EALPDAISRAAMTMVQSLLNGNKILSCGNGASSANAQHFAASMINRFETERPSLPALALSADNvmLTAISNDRLHDEIYAKQVRAL 106
                 677888888888.999***********************************************************888899999999************ PP

                 TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  99 vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                   +++gDvLl iS+ Gn   +v+a+eaa +r+m+++Alt+
  EHU02153.1 107 --GQNGDVLLAISTRGNTRDIVKAVEAAVTRDMTIVALTG 144
                 ..************************************97 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.59   3.5e+03     113     128 ..       8      23 ..       2      23 .. 0.81
   2 ?    0.2   0.0      0.11   6.4e+02       3      26 ..      39      62 ..      37      68 .. 0.83
   3 !   27.0   0.0   5.6e-10   3.3e-06      45     106 ..     101     165 ..      76     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.59
                 SHCHHHHHHHHHHHHH CS
         SIS 113 astksltaqlaaldal 128
                  +t s+++q aa +al
  EHU02153.1   8 CFTESIQTQIAAAEAL 23 
                 5899999999999886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
                CTSSEEEEEESHHHHHHHHHHHHH CS
         SIS  3 akakriyvlGaGtsyaiakelalk 26
                 + ++i+  G G+s a a+ +a+ 
  EHU02153.1 39 LNGNKILSCGNGASSANAQHFAAS 62
                566899999*******99999876 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 5.6e-10
                 HTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS...SEEEEEEE CS
         SIS  45 hgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplarea...dlalyina 106
                  +v al +++d++++is++g+t+d v+a+e a  r+++i+a+T+ +g  la      d+ ++i++
  EHU02153.1 101 KQVRALGQNGDVLLAISTRGNTRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLgpqDVEIRIPS 165
                 566788899************************************99999976555566666655 PP

>> HobA  DNA replication regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.4e-06     0.032      32      92 ..      30      91 ..      19     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-06
                HHHHHHHHHHTT-EEEEEE-GGGH.HHHHHHHHHHSSS-TTS----EEESTTTS-SS-HH.. CS
        HobA 32 lvakalkkllegkslivltdekre.WfeeyilkkinksqkerPllpivslkslypkldsvks 92
                 +++++++ll+g+ ++ + +   +   +++  + in+ ++erP lp + l++   +l+++++
  EHU02153.1 30 AAMTMVQSLLNGNKILSCGNGASSaNAQHFAASMINRFETERPSLPALALSADNVMLTAISN 91
                56789***********999876551567888999**************99865555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1513.11
//
Query:       EHU02154.1  [L=190]
Description: putative phospholipid-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-33  113.9   5.1    6.1e-17   61.7   0.3    2.3  2  BON           BON domain
  ------ inclusion threshold ------
      0.062   13.2   0.1       0.31   10.9   0.0    2.0  2  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.7   1.3e-18   1.2e-14       1      68 [.      45     113 ..      45     114 .. 0.94
   2 !   61.7   0.3   6.8e-21   6.1e-17       2      66 ..     124     187 ..     123     190 .] 0.96

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.3e-18
                 EHHCCHHHHHHHHHHHCHT.TGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdggl.daadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 dD +++ +v +alakd+++   a++  + ++G+V+L+G++++++ +++A +ia +v+G ++V+ne+++ 
  EHU02154.1  45 DDGTLELRVSNALAKDQQIkTDARVIATAYQGKVLLTGQAPNQEVANRAKQIAMGVDGATEVYNEIRIG 113
                 799999**********777366********************************************997 PP

  == domain 2  score: 61.7 bits;  conditional E-value: 6.8e-21
                 HHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEE CS
         BON   2 DaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelk 66 
                 D++i++k++++l+ ++++++++++V++enG+V L G V +++e+ +A++ia +v+GVk+V+  ++
  EHU02154.1 124 DTWITTKIRSQLLGSDQVKSSSVKVTTENGEVFLLGLV-TPEEAKAAADIASRVSGVKHVTTAFT 187
                 9*************************************.*********************98876 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18   1.6e+03      15      45 ..      52      82 ..      43      84 .. 0.68
   2 ?   10.9   0.0   3.4e-05      0.31      11      45 ..     145     184 ..     139     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
  NIR_SIR_ferr 15 rvpnGri.taeqlraladiaekygsgeirlTt 45
                  rv n    + + ++  + ia +y+ g + lT 
    EHU02154.1 52 RVSNALAkDQQIKTDARVIATAYQ-GKVLLTG 82
                  555555545556666777888999.9988886 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.4e-05
  NIR_SIR_ferr  11 mvrlrvpn......GritaeqlraladiaekygsgeirlTt 45 
                   +v ++++n      G +t+e+++a adia + + g  ++Tt
    EHU02154.1 145 SVKVTTENgevfllGLVTPEEAKAAADIASRVS-GVKHVTT 184
                   666777777777779*****************9.9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1527.60
//
Query:       EHU02155.1  [L=234]
Description: putative pirin-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-23   82.4   0.0    4.7e-23   81.2   0.0    1.6  2  Pirin      Pirin
    4.1e-21   75.0   0.2    8.9e-21   73.9   0.1    1.6  2  Pirin_C_2  Quercetinase C-terminal cupin domain
    0.00078   19.1   0.0     0.0029   17.3   0.0    1.8  2  Cupin_2    Cupin domain
  ------ inclusion threshold ------
      0.056   13.1   0.0       0.17   11.6   0.0    1.7  2  Cupin_3    Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0     1e-26   4.7e-23       8     108 .]      10     119 ..       3     119 .. 0.93
   2 ?   -2.4   0.0       1.1   4.8e+03      83      94 ..     192     203 ..     190     219 .. 0.63

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1e-26
                 TCC...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS CS
       Pirin   8 lgk..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee 97 
                 +g+  + +lq++ +F+f ++fdp+ + +++     ++v+  ga f+p+++ ++++++++l+Ge e+rDs+Gn+ ++  G++ +++A+ G+ +sE n+++
  EHU02155.1  10 CGQadYGWLQARYSFSFGHYFDPKLMGYAAlrvlnQEVLapGAAFQPRTYPQVDVLNIVLQGEAEYRDSEGNHITVGEGEALLLSAQPGVSYSELNPSK 108
                 5555679********************99999*9888889*********************************************************** PP

                 SS-EEEEEEEE CS
       Pirin  98 eesleglqlWv 108
                 e+sl+ +qlW+
  EHU02155.1 109 ERSLTRMQLWL 119
                 **********6 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
                 E-TT-EEEEEEE CS
       Pirin  83 tAgsGivhsEmn 94 
                  A  G  h+E+ 
  EHU02155.1 192 EASAGASHQETL 203
                 678888888864 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   8.8e+03      47      66 ..      70      94 ..      65     107 .. 0.53
   2 !   73.9   0.1     2e-24   8.9e-21       1      86 []     143     232 ..     143     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
   Pirin_C_2 47 eGevevngesla.....agDGlaie 66
                +Ge+e  +++ +     +g +l ++
  EHU02155.1 70 QGEAEYRDSEGNhitvgEGEALLLS 94
                5555554433332333355555544 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 2e-24
   Pirin_C_2   1 lvaSpdgrdgslkinQdarlyaakldegesleyelaagrkaYlqvieGevevng.....eslaagDGlaiedesslsltaeedaevLlfDl 86 
                 lvaSpdgrd+sl+++Q++++++++l +ge+  + l+   +aYlq i+G++e+++     e+l +gDG+ +++e++l l a +++++L++D+
  EHU02155.1 143 LVASPDGRDNSLQLRQQVWIHQLELAAGEQHLVPLHGA-RAYLQSIHGSLEASAgashqETLGCGDGAFLQEEQQLWLAAITPTRALVIDI 232
                 8**********************************966.9************64344449999**************************96 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.4e-07    0.0029       4      51 ..      47      95 ..      44     112 .. 0.87
   2 ?   -0.8   0.0      0.28   1.3e+03       5      61 ..     167     223 ..     164     233 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.4e-07
                EEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-T CS
     Cupin_2  4 elppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpa 51
                +l+pG+ +++ + p+ d + +Vl+Ge+e++  +g+ +++++G++++  a
  EHU02155.1 47 VLAPGAAFQPRTYPQVDVLNIVLQGEAEYRdSEGNHITVGEGEALLLSA 95
                799***88888889999*************999**********998655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.28
                 EETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpagtpHrfrNtg 61 
                 l+ Ge++    H    +++  + G +e     +++ +l+ Gd ++    +  +++  +
  EHU02155.1 167 LAAGEQHLVPLHGAR-AYLQSIHGSLEASaGASHQETLGCGDGAFLQEEQQLWLAAIT 223
                 566666666666666.666667777777755577888888887777666665555555 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.8e-05      0.17      23      58 ..      59      95 ..      46      99 .. 0.83
   2 ?   -2.4   0.0       0.9     4e+03      40      56 ..     195     211 ..     186     217 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
                ESS.EEEEEEEECEEEEEETTTEEEEEETTEEEEE-T CS
     Cupin_3 23 yee.dEfcyileGevkvtpeggetvelraGDlvvlpk 58
                y++ d +  +l+Ge ++++ +g+ +++++G ++ l +
  EHU02155.1 59 YPQvDVLNIVLQGEAEYRDSEGNHITVGEGEALLLSA 95
                5553555689********************9988765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.9
                 ETTTEEEEEETTEEEEE CS
     Cupin_3  40 peggetvelraGDlvvl 56 
                 +  + + +l+ GD ++l
  EHU02155.1 195 AGASHQETLGCGDGAFL 211
                 33444445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1894.79
//
Query:       EHU02156.1  [L=299]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-17   63.7   0.9    2.4e-17   63.0   0.9    1.3  1  LysR_substrate  LysR substrate binding domain
    2.4e-16   59.4   0.1    5.4e-16   58.3   0.1    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.012   15.5   0.1      0.026   14.4   0.1    1.6  1  MarR_2          MarR family
      0.044   13.6   2.2      0.075   12.9   0.3    2.3  2  DUF536          Protein of unknown function, DUF536
      0.096   12.8   0.1      0.096   12.8   0.1    2.2  3  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.9   6.8e-21   2.4e-17       4     201 ..      95     289 ..      92     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 6.8e-21
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepv 96 
                      + +L+i +   + +  l pl+ ++ a   + ++++ ++  +   ++l++g++D++i+ +    +++++  r+L++   v vaspdhp++++ p 
      EHU02156.1  95 WETQLTIVTEALVPTDALFPLVTKL-ADKANTQISIMTEVLAGAWERLEQGRADIVIAPDMHfrASTEINTRKLYSIVSVYVASPDHPIHNE-PE 187
                     5667888888888888888888777.6667889999999999****************99999*************************9995.44 PP

                     CGGGGCT..SEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  97 sledLad..eplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                     +l+++ +  ++ i + + ++ r  l      + l+ +++l+v++++  +++ +aGlG+a +p  +v++++a+grl+ ++ pe+  + ++ +++r+
      EHU02156.1 188 PLSEVTRvkYRGIAVADTARERPVL----TVQLLDKQQRLTVSTMDDKRRALLAGLGVATMPYNMVEQDIAEGRLR-VVSPEYSREVDIIMAWRR 277
                     4566655224445544333333333....3456666899*************************************.999998888********* PP

                     TCCCHHHHHHHH CS
  LysR_substrate 190 grelspavrafi 201
                     ++   +++  ++
      EHU02156.1 278 DSMGEAKAWCLR 289
                     *96666665555 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   1.5e-19   5.4e-16       1      60 []       9      68 ..       9      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.5e-19
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr+ +a+ + gsf++AA+eLg  ++a+s  +++LEeel+v Lf+R+g++++ T  G+
  EHU02156.1  9 LEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGR 68
                689*****************************************************9886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   7.3e-06     0.026       2      47 ..       6      47 ..       5      48 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.3e-06
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                +lt+  +rv+ a+ rr+    + ++ a++lg  +sa+s++ ++L++
  EHU02156.1  6 ALTLEALRVMDAIDRRG----SFAAAADELGRVPSALSYTMQKLEE 47
                699*************9....9**********************97 PP

>> DUF536  Protein of unknown function, DUF536
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.61   2.2e+03      33      40 ..      43      50 ..      41      51 .. 0.84
   2 ?   12.9   0.3   2.1e-05     0.075      17      33 ..     216     232 ..     214     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.61
      DUF536 33 qkLksqLe 40
                qkL+++L+
  EHU02156.1 43 QKLEEELD 50
                89999997 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.1e-05
      DUF536  17 lLdqQQqLtLeankdiq 33 
                 lLd+QQ Lt  ++ d++
  EHU02156.1 216 LLDKQQRLTVSTMDDKR 232
                 8**************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.7e-05     0.096      13      54 ..      12      52 ..      10      59 .. 0.83
   2 ?   -2.3   0.2       1.4     5e+03      21      38 ..      71      87 ..      68      93 .. 0.63
   3 ?   -2.5   0.0       1.6   5.7e+03      35      48 ..     222     235 ..     209     243 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH.CTTE CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLee.agLv 54
                +r+++a+  ++  ++++ a++l+  ++ lsy +++Lee  + v
  EHU02156.1 12 LRVMDAI--DRRGSFAAAADELGRVPSALSYTMQKLEEeLDVV 52
                6888888..8888999999999999999*********977766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
                TCTTB-HHHHHHHHTS-H CS
      HTH_20 21 raegltaselaerldlsk 38
                 ++g+ + e a+ l +++
  EHU02156.1 71 LERGRVLLEAADKL-TTD 87
                57777777888877.444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.6
                 TS-HHHHHHHHHHH CS
      HTH_20  35 dlskntlsyHLrvL 48 
                 +l+ +t+++  r+L
  EHU02156.1 222 RLTVSTMDDKRRAL 235
                 45666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2213.89
//
Query:       EHU02157.1  [L=377]
Description: metallo-dependent hydrolase, subgroup B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-08   34.1   0.1    9.6e-06   25.3   0.0    2.4  2  Amidohydro_3  Amidohydrolase family
    7.5e-08   32.1   0.3    3.9e-06   26.4   0.0    2.6  2  Amidohydro_1  Amidohydrolase family
    6.5e-05   22.7   0.1     0.0014   18.5   0.1    2.5  2  MarR_2        MarR family
  ------ inclusion threshold ------
      0.082   12.5   0.1        0.2   11.2   0.1    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
        0.1   12.6   0.1       0.24   11.3   0.1    1.6  1  MarR          MarR family
       0.24   11.7   0.0       0.63   10.3   0.0    1.7  1  UPF0122       Putative helix-turn-helix protein, YlxM / p13 l


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0015       4.6       5      23 ..      43      61 ..      43     124 .. 0.89
   2 !   25.3   0.0   3.2e-09   9.6e-06     385     456 ..     278     342 ..     221     365 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
  Amidohydro_3  5 akGrlvlPGFvDsHtHlag 23
                  a+G+++ +G +DsH H ++
    EHU02157.1 43 AEGCYLSAGWIDSHVHCYE 61
                  89**************665 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 3.2e-09
  Amidohydro_3 385 prigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld..adpldvdppe 456
                    + +a+vm+k +        +  ++l +++a +T  +A  l+l+++ G++e+G+dAD++++   ++p+ + ++e
    EHU02157.1 278 VYTQAHVMSKFF--------NVGMTLPQIIACVTHQAASGLRLRHK-GRIEPGYDADFTLFTvaQEPVSFVDAE 342
                   566666666664........34699********************8.**************9887887776655 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.014        41       2      16 ..      48      62 ..      47     148 .. 0.73
   2 !   26.4   0.0   1.3e-09   3.9e-06     233     318 ..     252     330 ..     168     363 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.014
                  EEE-EEEEEEECETT CS
  Amidohydro_1  2 vlPGlIDaHvHleqs 16
                  + +G ID+HvH +  
    EHU02157.1 48 LSAGWIDSHVHCYEK 62
                  67999******8643 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.3e-09
                   HHHHHHTSC.EEEEEECTTSSCCG..GHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEEC CS
  Amidohydro_1 233 rkaldeGvk.vglgtDgaasgnsl..nlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvd 318
                   r a+ +G+   ++++D   + n l   +         +q ++  +  ++g++l ++++++T ++A  l+l +++G+ie+G+dAD++++ 
    EHU02157.1 252 RAAIAQGILpDTISSD-IYCRNRLngPV--------YTQAHVMSKFFNVGMTLPQIIACVTHQAASGLRL-RHKGRIEPGYDADFTLFT 330
                   4555555555555555.32222221112........1233333343599*********************.6***************93 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   4.6e-07    0.0014       6      44 ..     105     141 ..     104     141 .. 0.94
   2 ?    1.1   0.0      0.12   3.7e+02       7      31 ..     178     199 ..     175     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.6e-07
                 HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHH CS
      MarR_2   6 aqarvLaaLgrrpgrdltvgelarrlglsksavsrilkr 44 
                 +q  +L++++r +   +t++ela+ ++++++a+  ++kr
  EHU02157.1 105 TQVYALLNIARTGI--ITQNELADMTQIDRQAIADAVKR 141
                 7999********97..7******************9997 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHCTTTSEEEHHHHHHHH CS
      MarR_2   7 qarvLaaLgrrpgrdltvgelarrl 31 
                 ++ ++ ++g++p++     e+a+ l
  EHU02157.1 178 HLPLMVNIGNNPPN---LDEIAELL 199
                 5678999*****95...55555433 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.8e-05       0.2      12      40 ..     113     141 ..     110     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.8e-05
      HTH_24  12 LqknprisqreLAerlglSpstvnrrlkr 40 
                 + + + i+q+eLA+++ + ++++   +kr
  EHU02157.1 113 IARTGIITQNELADMTQIDRQAIADAVKR 141
                 667788*******************9998 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.2e-05      0.24       4      40 ..     105     141 ..     104     141 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHH CS
        MarR   4 tqfviLrilyeqgplsvseLakklgvskstvtrvldr 40 
                 tq+ +L ++++ g +++ eLa++ ++++ ++  +++r
  EHU02157.1 105 TQVYALLNIARTGIITQNELADMTQIDRQAIADAVKR 141
                 78999***************************99997 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00021      0.63      37      61 ..     122     146 ..     118     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
     UPF0122  37 sEiAeefnvsrqavydnikrtekll 61 
                 +E+A+  ++ rqa+ d +kr  +++
  EHU02157.1 122 NELADMTQIDRQAIADAVKRHPDFI 146
                 69******************87766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2885.79
//
Query:       EHU02158.1  [L=214]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.9e-104  345.7  27.7     1e-103  345.5  27.7    1.0  1  DUF4310   Domain of unknown function (DUF4310)


Domain annotation for each model (and alignments):
>> DUF4310  Domain of unknown function (DUF4310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.5  27.7  5.7e-108    1e-103       2     209 .]       5     212 ..       4     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 345.5 bits;  conditional E-value: 5.7e-108
     DUF4310   2 ekkfwladwsfpllvallsagvfaGthlyivygvGafnevaivalleaGlkggsygaaaafgasfllarileGslvGildlGGslltGvGiGvpavlls 100
                 +k+fw+adwsfp++v+lls+gvfaGth+y+ yg+Gafneva+v++l aG+++g yga+aafgasfl+ari+eGslvGild+GG+++tGvG+Gvpa+ll+
  EHU02158.1   5 NKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVAFVSMLRAGIDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLG 103
                 789************************************************************************************************ PP

     DUF4310 101 agikaplesfalslltGlvlGliiGviiilirkltinqsnstfGadvmmGaGnasGrflGpliilsavaasipiGlGslvGaalfyklkkpiaGGailG 199
                 ag+ +p+++fa+sl+tGl+lG++iG++iil rk+tinqsnst+GadvmmGaGnasGrflGpliil+a+ asipiGl sl+Ga++fy ++kpi+GGailG
  EHU02158.1 104 AGFVFPVANFAASLVTGLILGVAIGYVIILARKFTINQSNSTYGADVMMGAGNASGRFLGPLIILAAMGASIPIGLLSLLGALVFYLWNKPITGGAILG 202
                 *************************************************************************************************** PP

     DUF4310 200 amilgalfpv 209
                 amilga+fpv
  EHU02158.1 203 AMILGAIFPV 212
                 *********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1551.17
//
Query:       EHU02159.1  [L=258]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-122  406.2  13.0   3.9e-122  405.9  13.0    1.1  1  DUF4311    Domain of unknown function (DUF4311)
  ------ inclusion threshold ------
      0.047   12.9  12.2      0.023   13.9   8.0    2.3  2  DUF2232    Predicted membrane protein (DUF2232)
        9.9    5.6  14.4        6.7    6.1   1.5    3.0  3  DUF3169    Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> DUF4311  Domain of unknown function (DUF4311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.9  13.0  6.5e-126  3.9e-122       1     213 []      25     237 ..      25     237 .. 1.00

  Alignments for each domain:
  == domain 1  score: 405.9 bits;  conditional E-value: 6.5e-126
     DUF4311   1 armfhapktqglgafrtlgelnacegdpishfsfglgflfnaaassvgagaltqdvthriipnwaaaalllknkkveetlhdpkkmaiagavigvvvva 99 
                 armfhap+tqg+gafrtlgeln+cegdp+shfsfglgf+fna+assv+aga+tqdv+hriipnw+aaa+++kn++v++tlhdpkkmaia+++ig+vvva
  EHU02159.1  25 ARMFHAPTTQGMGAFRTLGELNSCEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAAIMVKNRNVAQTLHDPKKMAIACGIIGMVVVA 123
                 8************************************************************************************************** PP

     DUF4311 100 llnttaaaipeslqvvavkvlvpaanllinlvmpvifwlaaldagkrtglwgtvlgglahlimgnavpgvvlgiligkgvdesgwtkvtkslliavvll 198
                 +ln+ta+a+p +lqv+avkvlvpaanll+n+vmpvifwlaa+dagk++g+w+t++ggla+limgnavpg+vlgiligkgv+esgw kvtk++++a+v l
  EHU02159.1 124 FLNSTASAVPAALQVTAVKVLVPAANLLVNTVMPVIFWLAAIDAGKKSGFWATIFGGLAQLIMGNAVPGLVLGILIGKGVEESGWHKVTKVMMTAIVAL 222
                 *************************************************************************************************** PP

     DUF4311 199 fvlsaffrgfdlkll 213
                 fvlsaffrgfd+k+l
  EHU02159.1 223 FVLSAFFRGFDMKML 237
                 *************96 PP

>> DUF2232  Predicted membrane protein (DUF2232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3     0.054   3.3e+02      38      67 ..     109     138 ..     100     141 .. 0.56
   2 ?   13.9   8.0   3.8e-06     0.023       9     109 ..     141     229 ..     134     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.054
     DUF2232  38 kygllallvaavllllfggpllallllilf 67 
                 k++++  ++ +v+++++ +++ a++ ++++
  EHU02159.1 109 KMAIACGIIGMVVVAFLNSTASAVPAALQV 138
                 445555555555555555555555555554 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.8e-06
     DUF2232   9 lslyiPvlgiilafllPlPiilltlrhgrkygllallvaavllllfggpllallllilfgllGlvlGyllkkkksaertliagtlafllgillafalla 107
                 + +++P  +++++ ++P+ + l  +  g k+g++a++  ++  l++g+++ +       ++lG+++G+ ++++     t +++t++++l++l a     
  EHU02159.1 141 VKVLVPAANLLVNTVMPVIFWLAAIDAGKKSGFWATIFGGLAQLIMGNAVPG-------LVLGILIGKGVEESGWHKVTKVMMTAIVALFVLSA----- 227
                 6789********************************************4443.......45555566665555555555444444444444444..... PP

     DUF2232 108 ll 109
                 ++
  EHU02159.1 228 FF 229
                 44 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   2.2    0.0021        12       7      38 ..       2      33 ..       1      44 [. 0.80
   2 ?    6.1   1.5    0.0011       6.7      16      74 ..     112     168 ..     109     174 .. 0.73
   3 ?    0.7   0.1      0.05     3e+02     208     225 ..     212     229 ..     189     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0021
     DUF3169  7 fillmliggliGgiiGfllgafeaekgleels 38
                f++++l + +iGg +G  +ga  a++     +
  EHU02159.1  2 FLIILLKSLIIGGLVGVGVGAGAARMFHAPTT 33
                899*****************999987555555 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0011
     DUF3169  16 liGgiiGfllgafeaekgleelsaalkelllligskilpllli.iavlvviis.vvflrka 74 
                 +  giiG++++af       ++sa+ ++l ++  ++ +p++++ +++++++i+ +  +   
  EHU02159.1 112 IACGIIGMVVVAFLNS----TASAVPAALQVTAVKVLVPAANLlVNTVMPVIFwLAAIDAG 168
                 3345899999999777....466666777777778899999999********965555554 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.05
     DUF3169 208 nyvllillivlfllslvf 225
                 ++v+++++++lf+ls +f
  EHU02159.1 212 TKVMMTAIVALFVLSAFF 229
                 456666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1839.14
//
Query:       EHU02160.1  [L=98]
Description: putative cytoplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-36  124.6   0.9    1.3e-36  124.4   0.9    1.0  1  DUF4312        Domain of unknown function (DUF4312)
  ------ inclusion threshold ------
       0.04   13.8   0.1      0.047   13.6   0.1    1.2  1  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC


Domain annotation for each model (and alignments):
>> DUF4312  Domain of unknown function (DUF4312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.9   1.5e-40   1.3e-36       1      83 [.       5      87 ..       5      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 1.5e-40
     DUF4312  1 ltttvtvsgkGetkeeafakalskvqkkvlketeevllriePvdvkvvkaeeeeytEkFLffFlpRkrkeyevelevtVevtv 83
                +tt+v+vsgkG+tk++af++als+vq++vl++++++llrieP+dvkvv+a+e+ +tEkFLffFl+R+r++++v+levt++vt+
  EHU02160.1  5 FTTSVAVSGKGDTKAKAFSDALSRVQHEVLRNANKILLRIEPQDVKVVRAQERIRTEKFLFFFLARERRHFSVDLEVTINVTC 87
                5899*****************************************************************************98 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.2e-06     0.047      31      68 ..      26      64 ..       2      77 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-06
                   SSHHHHHHHHHTTEEE-S.GCCT-SEEE-SS---SHHHH CS
  RTT107_BRCT_5 31 kedsdkkkLrklGikivq.eakkcntliApkilRTeKFL 68
                   +++ +++ Lr+ +  ++  e++++ ++ A + +RTeKFL
     EHU02160.1 26 LSRVQHEVLRNANKILLRiEPQDVKVVRAQERIRTEKFL 64
                   56667777777765555579999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 791.83
//
Query:       EHU02161.1  [L=118]
Description: hypothetical protein CKS_0700 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-61  203.1   6.8    8.5e-61  203.0   6.8    1.0  1  Gly_rich_SFCGS  Glycine-rich SFCGS
     0.0023   18.1   3.9     0.0046   17.1   3.9    1.5  1  DUF2620         Protein of unknown function DUF2620
     0.0051   16.8   0.2     0.0065   16.5   0.2    1.3  1  LacAB_rpiB      Ribose/Galactose Isomerase


Domain annotation for each model (and alignments):
>> Gly_rich_SFCGS  Glycine-rich SFCGS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   6.8   1.4e-64   8.5e-61       1     114 []       2     115 ..       2     115 .. 0.99

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 1.4e-64
  Gly_rich_SFCGS   1 vkvvigdrlgkgqkvakgveaaggkaivipglaadlklgdvmkkeeadlgisfcgsggagaltaqtkygykakyglrsveegvtaikegkkvlgf 95 
                     v+vvigdrlgkgqkva+gve+agg+a+v+pg+aad+klgdvmk e+ad+gisfcgsggaga+taq+kygykak+g+rsv+egvtai+eg++vlgf
      EHU02161.1   2 VTVVIGDRLGKGQKVAAGVEKAGGRAVVVPGVAADMKLGDVMKAENADFGISFCGSGGAGAITAQNKYGYKAKHGMRSVDEGVTAINEGATVLGF 96 
                     78********************************************************************************************* PP

  Gly_rich_SFCGS  96 gfldkeelgkrlveayvkk 114
                     gf+dkeelg+rlv+a++kk
      EHU02161.1  97 GFMDKEELGERLVQAWHKK 115
                     ***************9986 PP

>> DUF2620  Protein of unknown function DUF2620
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.9   7.7e-07    0.0046       3     112 ..       4     108 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.7e-07
     DUF2620   3 ivigGqlek.eeikelieklaedkvev.tvksDldAamkvksgeaDyylGaCntGaGgalalaiallGkekcltvskpgkvkkeeeikkaveeGkkaFg 99 
                 +vig +l+k ++++  +ek ++ +v v  v  D++    +k+ +aD+ +  C +G+ ga++       ++k    +k g+   +e ++ a++eG+++ g
  EHU02161.1   4 VVIGDRLGKgQKVAAGVEKAGGRAVVVpGVAADMKLGDVMKAENADFGISFCGSGGAGAIT------AQNKYGYKAKHGMRSVDEGVT-AINEGATVLG 95 
                 7899999985689999*9999999987369**********************999988664......455555556667777777775.6899999999 PP

     DUF2620 100 ftaeeiekvvpvl 112
                 f   ++e+  + l
  EHU02161.1  96 FGFMDKEELGERL 108
                 9988888766555 PP

>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.1e-06    0.0065      47     123 ..      39     114 ..      11     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
                 HHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEEEEETTTS-HHHHHHHHHHHHH CS
  LacAB_rpiB  47 vaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklarehnnanvlalGarvigeelakeivkaFle 123
                 +++ +++++ad+gi +Cg+G   +i+a    g  a +   + +   +   + a vl +G    +eel +++v+a+ +
  EHU02161.1  39 LGDVMKAENADFGISFCGSGGAGAITAQNKYGYKAKHGMRSVDEGVTAINEGATVLGFGFMD-KEELGERLVQAWHK 114
                 455667889**********9988888888889999988888888888888888888888754.78888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 1096.68
//
Query:       EHU02162.1  [L=105]
Description: hypothetical protein CKS_0701 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.5   0.0       0.04   14.2   0.0    1.3  1  PRD       PRD domain


Domain annotation for each model (and alignments):
>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-06      0.04      16      88 ..      33     100 ..      16     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-06
                 TTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHH CS
         PRD  16 eddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhfl 88 
                  +  +++ L  H++ +  R   g+ + + + + + e  p   ++a+++++   +     lp +E+  l++hf+
  EHU02162.1  33 PNAVQLQMLASHVRAMALRSVTGEGLPEVEADLFDEISPASMALAQQVVDLFGN-----LPPEEAWLLSVHFE 100
                 46778999***************999999999999999***************7.....9************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 881.31
//
Query:       EHU02163.1  [L=479]
Description: putative membrane permease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-81  273.6  31.9    2.5e-81  273.4  31.9    1.0  1  MFS_2     MFS/sugar transport protein
    2.4e-10   39.9  57.8    9.4e-09   34.6  27.6    3.2  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4  31.9   2.8e-85   2.5e-81       1     427 []      19     440 ..      19     440 .. 0.98

  Alignments for each domain:
  == domain 1  score: 273.4 bits;  conditional E-value: 2.8e-85
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktst..rwGrrrPwlllsaiilavsiillftppelsqsakf 97 
                 +yg+g+++ n++ ++ ++yll Fytd lg++a++ g+++lva+++ a+tD + G++ d+ +t   +G++rP++l   ++ a++ ++ f +++ls + k 
  EHU02163.1  19 AYGIGDFGSNLMLAIGTLYLLKFYTDELGMPAWYGGVIFLVAKFFTALTDMFTGIVLDSRRTigARGKFRPFILYFSLPVALAAAAQFVAHDLSLTCKT 117
                 59************************************************************99*********************************** PP

       MFS_2  98 iwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtker 196
                 + ++v+++l+ ++y+l++ +y+++vp++t++++eR  l+++r+  ++lg +++++  +++   + g  +++ gy ++a++++   ll++ ++++g+ker
  EHU02163.1 118 AIATVLFMLFGLFYSLMNCSYGAMVPAITRNPTERAHLAAWRQGGATLGLLVCTVGFMPIQSLFVG--KSALGYQMAAAVFVTGGLLCMGLCYSGVKER 214
                 ************************************************************988887..99***************************** PP

       MFS_2 197 vemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllg 295
                       e t++  k  +  +++++f n+++++l l+ l++++a+++  ++ +Yy +yvl++ s  s++ ++ +   l+g++l+++++kr+gkk++yl g
  EHU02163.1 215 YV----EVTPAHHKPGVATAFRAIFHNPPLRTLCLANLCTLAAFNIKLAIQVYYTQYVLNDVSLLSWMGFFSMGCILAGVLLVPAAVKRWGKKQVYLGG 309
                 55....5899999************************************************************************************** PP

       MFS_2 296 alltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqs 394
                 +++ +v+ ++ +l   s  l+f+++  +a+fg+++ ++l w++++d+v+yge+ktG r+eg  +  ++f+ k+ ++ ++++ gl+L+ +gy  +++ qs
  EHU02163.1 310 LVFWAVGDLCNFLW-GSTSLMFVLFSCMAFFGTAFVNSLNWALVPDTVEYGEWKTGIRAEGACYTGYTFFRKISAAMAGFLPGLMLTQIGY-VPNALQS 406
                 **************.9999999999999***************************************************************.******* PP

       MFS_2 395 pqvvlalrllyavlpavlllvallllvr.yplnd 427
                 ++++++lr l+++ p+ l+++a+l++   y+ln+
  EHU02163.1 407 DATLAGLRQLIFIWPCTLAIAAALIMGWgYRLNE 440
                 *************************966699986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   5.6    0.0018        16     216     294 ..      25     104 ..       4     122 .. 0.71
   2 !   34.6  27.6   1.1e-12   9.4e-09      87     328 ..     119     355 ..      88     356 .. 0.68
   3 !   19.3  22.2   4.9e-08   0.00044       4     164 ..     245     434 ..     243     463 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0018
       MFS_1 216 lllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr...lgrrrrlllallllllaalglall 294
                 + ++ +   g+l+ll +y  + lg++ ++++g+++ ++ +++a   +++g ++d    +g+r     ++l ++l +++ a +
  EHU02163.1  25 FGSNLMLAIGTLYLLKFY-TDELGMP-AWYGGVIFLVAKFFTALTDMFTGIVLDSrrtIGARGKFRPFILYFSLPVALAAAA 104
                 556777888899******.*******.8*************************77577444333333333333333333333 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 1.1e-12
       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGailg.pllgg...lla..sslgWravfyilaivsllafvlfllllpeeppe 178
                 +  vl +l Gl++++++ + +a++ +++   +er+   ++ ++g+ lG ++   ++ +   l++  s+lg++ +  ++   +ll+   ++l +   + +
  EHU02163.1 119 IATVLFMLFGLFYSLMNCSYGAMVPAITRNpTERAHLAAWRQGGATLGLLVCtVGFMPiqsLFVgkSALGYQMAAAVFVTGGLLC---MGLCYSGVKER 214
                 4778999**********************99*****************9543255555222444366666776666666666666...34555455555 PP

       MFS_1 179 rkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlgr 273
                    ++p+      +p  ++  ++a++++p+l  ++l+ l++ + +f++   + ++ +   q vl+  +ll+  ++++++++++ +l  l+ + ++r+g+
  EHU02163.1 215 YVEVTPAHH----KPGVATA-FRAIFHNPPLRtLCLANLCTLA-AFNIklaIQVYYT---QYVLNDVSLLSWMGFFSMGCILAGVL--LVPAAVKRWGK 302
                 555555555....5666666.********88655666666664.6666544333333...44443333444444477777777555..899999***** PP

       MFS_1 274 rrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdl 328
                 +   l +l++ +++ l+ +l++ t   +l+ +++ ++ f g +fv+++ +al+ d 
  EHU02163.1 303 KQVYLGGLVFWAVGDLCNFLWGST---SLMFVLFSCMAFfGTAFVNSLNWALVPDT 355
                 ************************...555556666777799999**999999886 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 4.9e-08
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgag 100
                 +a l +la++++ +a+   + +  l+ ++s ++++  + +   ++++l++ + + r+G + v+l gl+++a+g l+ +l++s++ +++++ +++ +g++
  EHU02163.1 245 LANLCTLAAFNIKLAIQVyYTQYVLN-DVSLLSWMGFFSMGCILAGVLLVPAAVKRWGKKQVYLGGLVFWAVGdLCNFLWGSTSLMFVLFSCMAFFGTA 342
                 44455566666677776635555566.*******8887777777788888888999******************99999977777************** PP

       MFS_1 101 alfpagaaliadwfpkeergrai.......gllsagfslGailgpllggllasslg.....................Wravfyilaivslla 164
                 +++++  al+ d +   e   +i         ++ +  ++a+++  l gl+++++g                     W+ +  i+a++ + +
  EHU02163.1 343 FVNSLNWALVPDTVEYGEWKTGIraegacyTGYTFFRKISAAMAGFLPGLMLTQIGyvpnalqsdatlaglrqlifiWPCTLAIAAALIMGW 434
                 ************99987666555555311155555778889999999999999999999999999999998555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3400.71
//
Query:       EHU02164.1  [L=464]
Description: putative transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-79  267.5  27.8    1.8e-79  267.4  27.8    1.0  1  MFS_2     MFS/sugar transport protein
    2.2e-07   30.1  45.4     0.0005   19.1  16.9    3.0  3  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.4  27.8     2e-83   1.8e-79       1     427 []      24     447 ..      24     447 .. 0.98

  Alignments for each domain:
  == domain 1  score: 267.4 bits;  conditional E-value: 2e-83
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktst..rwGrrrPwlllsaiilavsiillftppelsqsakf 97 
                 +yg+g+l+ nil  + ++yll Fytdvl l+ ++ g+++lva+++ a+tD   G++ d+ +     G++rP++l +a + ++  ++ f+  ++  ++k+
  EHU02164.1  24 AYGMGDLGSNILLDIGTLYLLKFYTDVLELPGTYGGIIFLVAKFFTAFTDMGTGIMLDSRRRigPKGKFRPFVLYAAFPVTLLAVANFIGTPFEITGKA 122
                 59********************************************************9988899***************************9999*** PP

       MFS_2  98 iwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtker 196
                 ++++v+++l  +++++++ +y+++vp++tk++deR sl+++r+  ++lg +++++  ++++   +g  s++ +y+++a ++++  ll ++ +++g+ker
  EHU02164.1 123 VVATVLFMLYGLFFSMMNCSYGAMVPAITKNPDERASLAAWRQGGATLGLLICTVGFVPVMNLAEG--SAQFRYIVAATLFSAFGLLFMWWCYAGVKER 219
                 ************************************************************999998..9****************************** PP

       MFS_2 197 vemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllg 295
                   +  + ++  ++   ll  ++++  nr++ il ++ l+++ a++v  ++ +Yy +yvl++    s++ ++ +   ++g+++++ +++r+gkk++y+ g
  EHU02164.1 220 YVE--QPSAHPTQNPGLLASFRAIAGNRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPILLSWMGFFSMGCIFIGVFMMPGAVRRFGKKKVYIGG 316
                 765..77788888899*********************************************************************************** PP

       MFS_2 296 alltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqs 394
                 +l+  v+ +l +    +  + f+v+  +a+fg ++ ++l w++++d+v+yge++tG r+eg+++  ++f+ k+  +++++  g++L+ +gy  +++vq 
  EHU02164.1 317 LLIWGVGDLLNYCY-GGGSVSFIVFSCLAFFGSAFVNSLNWALVSDTVEYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGY-VPNAVQR 413
                 **************.****************************************************************************.******* PP

       MFS_2 395 pqvvlalrllyavlpavlllvallll.vryplnd 427
                 +++v +l+ l+++ p++l++v+++ + ++y+ln+
  EHU02164.1 414 ASTVEGLKQLMFIYPGALAVVTIVAMgCFYNLNE 447
                 ************************9966799996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   8.9   3.3e-05      0.29     225     326 ..      39     148 ..      23     153 .. 0.83
   2 !   19.1  16.9   5.6e-08    0.0005      90     263 ..     127     298 ..     125     302 .. 0.73
   3 !   18.4  19.5   8.8e-08   0.00079       4     176 ..     252     447 ..     250     460 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.3e-05
       MFS_1 225 glltllplylqevlglsglllaglllallalvgailallagrlsdr...lgrrrrlllallllllaalglallavt.......ssavllllvlvliGfg 313
                 g+l+ll +y  +vl l+g  ++g+++ ++ +++a+  + +g ++d    +g++     ++l +++ + +la+++++        +av++ ++++l+G++
  EHU02164.1  39 GTLYLLKFY-TDVLELPG-TYGGIIFLVAKFFTAFTDMGTGIMLDSrrrIGPKGKFRPFVLYAAFPVTLLAVANFIgtpfeitGKAVVATVLFMLYGLF 135
                 488899999.*******8.*****************99999999766888888888888888888888888888887777787777777778888**** PP

       MFS_1 314 lgfvfpsllalas 326
                 ++++++s+ a++ 
  EHU02164.1 136 FSMMNCSYGAMVP 148
                 ****999988775 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.6e-08
       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpk.eergraigllsagfslGa.ilgpllgglla.sslgWravfyilaivsllafv..lfllllpeepperkrks 183
                 vl +l Gl+ ++++ + +a++ ++++  +er++  ++ ++g+ lG  i++ ++ +++  + ++ +  ++++a ++  +++  +++++  ++++  + +s
  EHU02164.1 127 VLFMLYGLFFSMMNCSYGAMVPAITKNpDERASLAAWRQGGATLGLlICTVGFVPVMNlAEGSAQFRYIVAATLFSAFGLlfMWWCYAGVKERYVEQPS 225
                 7889**********************999*****************5666********77777555555555555555551155555566666666666 PP

       MFS_1 184 pkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailall 263
                   +    + p  l++ ++a+  +++l+ ++++ l++ + +f+  l+    y+q vl+ +  ll+   ++++++++++++++
  EHU02164.1 226 AHPT---QNPGLLAS-FRAIAGNRPLFiLCIANLCTLG-AFNVKLAIQVYYTQYVLNDP-ILLSW--MGFFSMGCIFIGVF 298
                 6666...56666777.********88744555555554.66654444444679999999.78888..88888888777655 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 8.8e-08
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgag 100
                 +a l +l+++++ +a+   + +  l+ +p  ++++  + +   +++++ +   + rfG ++v++ gll++++g ll  +++ ++  ++v+ +l+ +g++
  EHU02164.1 252 IANLCTLGAFNVKLAIQVyYTQYVLN-DPILLSWMGFFSMGCIFIGVFMMPGAVRRFGKKKVYIGGLLIWGVGdLLNYCYGGGSVSFIVFSCLAFFGSA 349
                 45566666666777777744455566.9******7666665556666666555678*****************9999999756567************* PP

       MFS_1 101 alfpagaaliadwfpke.......ergraigllsagfslGailgpllggllasslg...............Wravfyilaivsllafvlfllllpeep 176
                 +++++  al++d +            g ++  ++ +  ++ +l+  + g++++++g                +++f+  ++++++ +v +++++  ++
  EHU02164.1 350 FVNSLNWALVSDTVEYGewrtgvrSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGyvpnavqrastveglKQLMFIYPGALAVVTIVAMGCFYNLNE 447
                 ************998753555555777888888888899****************************99999999***********999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3683.87
//
Query:       EHU02165.1  [L=303]
Description: hypothetical protein CKS_0704 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-29  102.0  36.1    3.8e-29  102.0  36.1    1.5  1  TauE          Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.13   12.0   0.4       0.27   11.0   0.4    1.5  1  YfmQ          Uncharacterised protein from bacillus cereus gr


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0  36.1   4.2e-33   3.8e-29       2     235 ..      23     249 ..      21     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 4.2e-33
        TauE   2 llagllaGfvagllGiGggliavPlLllllppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvll 100
                 +++ +l  f++ ++G+Gg+l+++Pl +lllp ++a+++s+++ +at+l +++  r +   +wr +l+l+l+s++G++lG+++l+++p++++k+ +g +l
  EHU02165.1  23 IAIMFLYTFIGICAGFGGALVTMPLITLLLPVKMAAPMSVIVGTATALYATWLSRNE--THWRSALVLILFSFAGIPLGIYALASFPDNIMKTGLGTFL 119
                 66777888****************999988**********99999999988877775..9*************************************** PP

        TauE 101 lllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavd...wplll 196
                 +l+a++ l+ ++    +     ++ +l+v++g+++G+l++ +   g +  v+++ +l++l +  +++t +++++++++a + g+  +g ++   ++l+l
  EHU02165.1 120 ILYAFYSLFVPRL---P--VCDKN-WLVVPTGIIAGALGSAFATNGPP--VVIYGMLRNLAPAAFRGTLNAFFTASNIAIIGGLTTSGILTlstVKLVL 210
                 *******996652...2..34455.558899999**********9777..44444557********************999998664444411155666 PP

        TauE 197 lllpgallGallGarlarrlsertlrrlfallllvlgvk 235
                 + +p+++lG+l+G+++ +r+s  t+r++++lll+++g+ 
  EHU02165.1 211 FCVPTMILGSLVGQYVHQRISVSTFRLMVLLLLIASGAM 249
                 6***********************************986 PP

>> YfmQ  Uncharacterised protein from bacillus cereus group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4     3e-05      0.27       8      43 ..     200     234 ..     195     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3e-05
        YfmQ   8 lvifsllkllvsslPsgvvesliskfevhakleeen 43 
                 ++ +s +kl++ ++P+ +++sl++++ vh++++ + 
  EHU02165.1 200 ILTLSTVKLVLFCVPTMILGSLVGQY-VHQRISVST 234
                 667899*******************9.899987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2172.75
//
Query:       EHU02166.1  [L=685]
Description: alpha-glucosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-73  246.3   4.7    9.2e-73  245.9   4.7    1.1  1  Glyco_hydro_31   Glycosyl hydrolases family 31
    1.2e-06   28.7   1.6     0.0001   22.5   0.5    3.3  2  Gal_mutarotas_2  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   4.7     1e-76   9.2e-73       6     437 ..     230     665 ..     226     666 .. 0.87

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 1e-76
                     SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEE.ESCGGSBTTC.......CTB-.TTTSS-HHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   6 ptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldviv.lDidymdkrk.......dftwdkerFpdpkemvdel 92 
                     +++  ++++ ++  Gr++ +P w++      ++   ++  ++ +dk+r+ag+ + +i+ +D+  ++ +        +++wd+e +p+ ++ +++ 
      EHU02166.1 230 DSYIALLEKLSAWLGRQPELPDWVYDGVILGIQ-GGTDVCQQKLDKMRQAGVKVNGIWaQDWSGIRMTSfgkrvmwNWQWDSELYPQLDTRIQQW 323
                     5577788999999***********985533322.3789999*****************77885533222445556699***999*********** PP

                     HHTT-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCSTCECTSS..EEEEB-TTSHHHHHHHHHHHHHHHCTCT--EEEE-STTTB.SCCC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  93 hekgvklvvivdpaiskqeeeyeafdegkekgvflknkdgsykgkwpg..stafpDftnpearewwkkelkkflldlgvdglwiDmnepsnfeeg 185
                     +++gv+++  ++p++++   + +  de++ +g++ k+++g+++++  g  ++ ++D+t+p+a +w+k+ +k++l+ lg+ g++ D++e       
      EHU02166.1 324 KAEGVQFLSYINPYVAS---DRPLCDEAARHGYLTKTASGQDYHVEFGefYAGVVDLTHPDAYNWFKEVIKQNLIGLGCGGWMADFGEYLPT--- 412
                     9**************65...479*************99999444422334899********************************9994321... PP

                     CHHHHCCCTSCETTCCHHH.HCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCT.EEE--S-BSSH...HHHHHHHHHHHHHHTTT-- CS
                     xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 186 sdseekeaketkaagshyd.vhnlygllmakatyeglkekkpkkrpfiltRstfaGsqrya.ahWsGdnassW...eslresipallsfslsGvp 275
                          +   +  ++g h++ +hn+++ l+ak  y++l e+ +  +++ + R++++Gsq+ya ++W Gd + +W   + l+  +pa+ls+++sG  
      EHU02166.1 413 -----D---TVLHNGVHAEiMHNAWPALWAKCNYDALAETGKLGETLYFMRAGYTGSQKYAvMMWAGDQNVDWsldDGLASVVPAALSLAMSGHG 499
                     .....1...12234447666********************999999**********************99999887899999************* PP

                     SEEEECT-SGHC......HHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCH..HHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HH CS
                     xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 276 fwgaDigGFent......teelyaRWvqlGafsPffrnHsskdakrqepwafge..eveeaarkaielRyrLlPylYtlfyeahetglpvvrplf 362
                     +  +DigG++ t      ++el+ RW+ + +f+P++r+H    +++ + w+f++  e+++ + ++  +  +L Py+ ++  +++++glpv+rplf
      EHU02166.1 500 LHHSDIGGYT-TlygmkrSKELLLRWCDFNTFTPMMRTHEG--NRPGDNWQFDSddETMAHFARMSTIFTSLKPYIRQAVAQNARSGLPVMRPLF 591
                     *********3.244555588********************9..888999**988778889999999999************************** PP

                     HH-TT-CCCCC--S-EEETTTEEE----STT-SEEEEEE-SSEEEETTT--EEESSE.EEEEE--TTSS-EEEETT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 363 lefpedektfdiddqfmfGdsLLvaPvleeeatsvevyLPggkWydfwtgekyeggq.tveltapldeiplfvraG 437
                     l+++ d +t+++++q++fG++LLvaPv+ee+ +  ++yLP+++W+++wtge  +gg+ t  + apl + p+f+ra 
      EHU02166.1 592 LHYEADARTYSLKYQYLFGRDLLVAPVYEEGRHDWTLYLPEDRWINLWTGEAANGGEiT--VAAPLGQPPVFYRAE 665
                     ******************************999*******99*************6646..77788779*****86 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.5   1.2e-08    0.0001       2      30 ..     127     155 ..     126     206 .. 0.66
   2 ?    0.7   0.0     0.075   6.7e+02      21      55 ..     466     500 ..     448     504 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.2e-08
                      -EEEEEES-SS-SS-TTEEEEE-----TS CS
  Gal_mutarotas_2   2 ehvyGlGEkagplnlrgtryrlwntdafg 30 
                      +h+yG+GE++  ++lrg++++lw++++  
       EHU02166.1 127 DHIYGCGEQFSCFDLRGKPFPLWTSEQGV 155
                      8*****************88888877653 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.075
                      EEE-----TS-HCC.CTS-SCEEEEEEEE.TCEEEE CS
  Gal_mutarotas_2  21 yrlwntdafgyeaessdplYgsiPfmisl.segyGv 55 
                      + +w  d++  ++  +d l   +P  +sl  +g+G+
       EHU02166.1 466 VMMWAGDQN-VDWSLDDGLASVVPAALSLaMSGHGL 500
                      579999998.7888899************9888998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 5361.55
//
Query:       EHU02167.1  [L=280]
Description: sugar-1-epimerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-39  134.5   0.0    1.2e-38  133.1   0.0    1.5  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.0   6.7e-43   1.2e-38       3     296 ..       8     270 ..       6     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 6.7e-43
                  EEEEETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSC..CSSCEECSS-SEEETTEEEETTEEEECCCCBT.TTCEETBSGGGSB-EE CS
  Aldose_epim   3 itlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkds..yfgatlgrvanRianGeFeldGkpyqlpqnee.gknplHGgargreWev 97 
                  + l+ g  ++a+++++GA l +l+  +   ++++l+ +++ +    +  ++g +l++++nR+a+G+  ++Gk  +lp+n++ g +++HG+  +r+W++
   EHU02167.1   8 LVLRAG-DYQATLVTVGAGLAELTYAG---QHLVLPHPPE-TL---PlaHMGKVLIPWPNRVAKGTWYHNGKWLHLPINDHeGGTAIHGLLAWRDWQI 97 
                  678887.6*******************...799***9993.22...24589*********************************************** PP

                  EEEEETTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEEEEEEEEEEESS.S-EEEEEEEEEEEETSSCTCTGGEEEEEEEEEEEECTTSGEEEEEE CS
  Aldose_epim  98 eevkeddgvtvslvlkpdgeegypgdlevrvtytLnednelkieyeatndg.kptpfnltnHtYFnlsgesidshelqieadeylevdeeliptgelk 194
                  +e++   + t +l++  + ++gyp++l  +vty+L+  + l +++  +n+g +p p+++++H+Y+ ++         ++  de l ++          
   EHU02167.1  98 TEHT---DSTARLTIFLPPSYGYPFALVSTVTYRLDAMQGLLVTLDSQNTGrEPAPYGAGAHPYLTCN---------RMPLDECLLTLP--------- 174
                  ****...4555555555668********************999999999999****************.........777777777777......... PP

                  ECTTCCCCCCSSEEHCSSETEEEEEEEESSC.SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTTSEECCEEESSECTCETCCCECHHHT-EEEHTT CS
  Aldose_epim 195 dvkgtpfdfrqpkaigedlkglDhayllksk.lkaviidpdkksgiklevsttepalvvytgnflkkylsreglaletqmlpdepnhpefpsivlkpG 291
                      ++ df +p+ +g ++  +D+   + +  +++ ++++++k ++++  ++++p+l++ytg    + l r gla e++++p ++++++ +++ l+p 
   EHU02167.1 175 -AAIAQGDFLSPRLLGATQ--IDDSLRTGTDgQQWEVRLTSRKPSLSVYLRSDQPWLQIYTG----EKLGRTGLATEPMSCPPDAFNSGVDLVWLAPQ 265
                  .45556688*********5..88888777777******************************....44669**************************9 PP

                  TEEEE CS
  Aldose_epim 292 esysa 296
                   +++ 
   EHU02167.1 266 ATHRL 270
                  99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2093.54
//
Query:       EHU02168.1  [L=413]
Description: aldose-ketose isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.7e-127  423.3  12.4   9.7e-127  422.9  12.4    1.0  1  GlcNAc_2-epim   N-acylglucosamine 2-epimerase (GlcNAc 2-epime
  ------ inclusion threshold ------
       0.34   10.4   8.5        3.4    7.1   4.6    2.5  2  Glyco_hydro_76  Glycosyl hydrolase family 76
       0.48    9.3   2.5       0.87    8.4   0.1    2.0  2  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> GlcNAc_2-epim  N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.9  12.4  1.6e-130  9.7e-127       2     346 .]      32     387 ..      32     387 .. 0.99

  Alignments for each domain:
  == domain 1  score: 422.9 bits;  conditional E-value: 1.6e-130
                    .E--B-TTS-B-GGG-EEHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHTTTTTB-TTTSSB-SEEETTEEEE--EEHHHHHHHHHHHHHHHTTT CS
  GlcNAc_2-epim   2 ffeeldadGkvldkdkreivlqaRqvycfavaaqlgrpgwldlvehGlkflekvlrdaehggyfsalrdggvldaskdaYdhaFvllalasalaag 97 
                    +f++l ++G+v++++ ++++++aR+++++avaa +grpg+++lvehG+++l+++lrd+++gg++++++d+gvldask+ Y+h+Fvll +asa+++g
     EHU02168.1  32 GFGWLGNNGQVKPDNGTHLWITARMLHVYAVAASMGRPGAYQLVEHGINALNGALRDKKYGGWYACVNDEGVLDASKQGYQHFFVLLGAASAVTTG 127
                    49********************************************************************************************** PP

                    -TTHHHHHHHHHHHHHHHTEETTTTEE--EE-TTSS-B...EEHHHHHHHHHHHHHHHHTT-BTHHHHHHHHHHHHHTTTTGGGGTT----EE-TT CS
  GlcNAc_2-epim  98 eeeakdlldetlavlekhlweekaglvkeesdkefskl...rgsnpnMhlleAmLalaeatgdkeyleraeeiaelvisefadaesglvrEhfded 190
                    ++ a+ llde+++v+e+ +w+e+++++ e++d++fsk+   rg n+nMh++eA+L+++++t+dk++l+ra ++ +++i+++a++++++v+Ehfd++
     EHU02168.1 128 HPAARPLLDEAIKVIERYFWSEDEQMCLESWDEAFSKTedyRGGNANMHAVEAFLIVYDVTHDKKWLDRALRVTSVIIHDVARQNNYRVNEHFDTH 223
                    ************************************************************************************************ PP

                    --B-TTTTTT...-STT-SSB-HHHHHHHHHHHHHHHH..H.TT----THH.HHHHHHHHHHHHHHBS-SSS.SB-S-B-TTS-BSS--EEHHHHH CS
  GlcNAc_2-epim 191 Wnvapdynge...dlfrpygvePGHqiEwawLlldlal..l.kreraakll.ekArkLfetalakgwdkdrg.glvytldaagkpvddakllWpqt 278
                    W+++ dyn++   ++fr+yg +PGH+iEw +L+l+l++  + + e ++ +l e+A+ Lf+++l+++w++d++ g+vyt+d++gkpv+++++ Wp +
     EHU02168.1 224 WTPLRDYNKDnpaHRFRAYGGTPGHWIEWGRLMLHLHAafEaRFETPPAWLvEDAKGLFHATLRDAWEPDGAdGFVYTVDWDGKPVVRERVRWPIV 319
                    ************************************98543788999************************************************* PP

                    HHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHTB-TTTSSB-SEE-TTS-B-----------TTTHHH CS
  GlcNAc_2-epim 279 EalkaaaalaeltgearylewyarvaeylerhlidpekGlWfdkldadgevaekvpaGksdfYHilga 346
                    Ea+ +a+al+++tgea+y++wy+++++y++++l+d e+G+W+++ld +++v++kv++Gk+d+YH+l++
     EHU02168.1 320 EAMGTAYALYTVTGEAQYEAWYQKWWDYCMTYLMDFENGSWWQELDCENKVTTKVWDGKQDIYHLLHC 387
                    ******************************************************************98 PP

>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0043        26     227     251 ..     180     204 ..     126     242 .. 0.77
   2 ?    7.1   4.6   0.00057       3.4     225     273 ..     322     374 ..     320     390 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0043
                     HHHHHHHHH--HHHHHHHHHHHHHH CS
  Glyco_hydro_76 227 gaaylynaTgdekWldrvkgllnat 251
                     +    y +T+d+kWldr+ ++++ +
      EHU02168.1 180 AFLIVYDVTHDKKWLDRALRVTSVI 204
                     4556677888888888877666555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00057
                     HHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEEC..TTEEEEEE-TT..STTC CS
  Glyco_hydro_76 225 lsgaaylynaTgdekWldrvkgllnatlstffpd..gnilyevacep..sekc 273
                     ++ a+ ly +Tg+++++   ++ ++ ++ ++++   g+  +e  ce+  ++k+
      EHU02168.1 322 MGTAYALYTVTGEAQYEAWYQKWWDYCMTYLMDFenGSWWQELDCENkvTTKV 374
                     55666666666666666666666666666666666566666666666444444 PP

>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00015      0.87     365     401 ..     176     212 ..     133     238 .. 0.73
   2 ?    0.6   0.4     0.035   2.1e+02     365     394 ..     320     349 ..     305     373 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00015
                     HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETT CS
  Glyco_hydro_47 365 EaiESlfylYritgdekyrevgwemfealekatktes 401
                     +a+E + ++Y +t+d+k+++ + ++ + + + ++ ++
      EHU02168.1 176 HAVEAFLIVYDVTHDKKWLDRALRVTSVIIHDVARQN 212
                     79********************999888877655444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.035
                     HHHHHHHHHHHHH--THHHHHHHHHHHHHH CS
  Glyco_hydro_47 365 EaiESlfylYritgdekyrevgwemfeale 394
                     Ea+ + + lY +tg+ +y  +  + +   +
      EHU02168.1 320 EAMGTAYALYTVTGEAQYEAWYQKWWDYCM 349
                     667778999999999999999887776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3042.12
//
Query:       EHU02169.1  [L=291]
Description: putative aldolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-52  178.5   0.0    1.8e-52  178.3   0.0    1.0  1  DeoC      DeoC/LacD family aldolase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   0.0     1e-56   1.8e-52       2     234 ..      17     257 ..      16     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 1e-56
                 EEEEECCSHHHHHHHHCTSS......HHHHHHHHHHHHHHGGGSSEEEEETTTHHHHHHCSCT...TSEEEEETECSSCCTTSTTEEEE.....TTCHH CS
        DeoC   2 vilavDqrvankddtasaqn......eqledlkalvkealtpgasavlldpgviasaskeyak...diallvkldkgtyllkskqrdvd.....evasv 86 
                 ++lavDqr a++ ++a+a +       +l+++k++++ +l+p+asa+l+d++++ ++ +e+ +    ++++v++d    +++ ++ +vd        + 
  EHU02169.1  17 AMLAVDQREAMRLMFAAAGApqpvsdRVLTEFKVNAASVLSPYASAILVDQQFCFQQIVEQRAvspGCGIIVAAD---AFIPGNGIPVDsveidHRVDP 112
                 79***************9999****99********************************9999999*********...99****999999999888999 PP

                 HHHHHTT-SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHHHHTEEEEEEEEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHH CS
        DeoC  87 eeakalGAdavkvvvyyradgseeeqqklaeikrvkeacheeglplilelylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedae 185
                 +++k++GA+a+k++v +  +++e++qq+l++++++ ++ch +gl++i+e ++r+++  d +++++++  Aa+   + GaD++Kve+p +++ ++ +  +
  EHU02169.1 113 QAVKRDGAKALKLLVLW--RSDEDAQQRLDMVNTFTARCHRHGLLSIIEPVVRPPRRGDRFDREQAILAAAKELGNSGADLYKVEMPLYGKGSQADLLT 209
                 *****************..99***********************************99999************************************** PP

                 HHHHHHHCHSSTEEEEETTSSHHHHHHHHHHHHHHHTHCEEEESHHHHT CS
        DeoC 186 vfkdvikaapvpgvvlsGGvseedfletvedAvkeagasGvlsGRaifq 234
                 + +++++ + +p+v+ls+G++e++f+++v+ A+ +agasG+l+GRa+++
  EHU02169.1 210 AAQKLNDLIMMPWVILSSGIDEKLFPRAVRVAM-QAGASGFLAGRAVWS 257
                 *********************************.**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2108.45
//
Query:       EHU02170.1  [L=301]
Description: NAD-binding dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-44  150.6   0.7    5.2e-44  150.2   0.7    1.2  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    7.5e-26   90.8   0.1    1.8e-25   89.6   0.0    1.7  2  NAD_binding_11   NAD-binding of NADP-dependent 3-hydroxyisobu
      1e-08   35.6   0.1      3e-08   34.1   0.0    1.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      3e-05   24.0   0.1    5.2e-05   23.2   0.1    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00077   19.7   0.0     0.0014   18.8   0.0    1.4  1  TrkA_N           TrkA-N domain
    0.00081   19.0   0.0     0.0072   15.9   0.0    2.0  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.039   13.5   0.0    1.5  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
      0.029   13.8   0.0      0.047   13.1   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.093   11.7   0.0       0.15   10.9   0.0    1.3  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
        0.1   12.2   0.0       0.17   11.5   0.0    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.17   11.9   0.0       0.48   10.5   0.1    1.8  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.7   3.2e-47   5.2e-44       2     156 ..       4     160 ..       3     163 .. 0.98

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 3.2e-47
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS...HCCC--TT-EEEE-S---H CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg...llealkkgdilidgstssp 94 
                    ++fiGlG+MG++ma+nllk+g+++ v+++++e+v +lv++ga+aa s++e+++++++vitm+++g+ v++v+ g   ++ +l++++++id+st++p
     EHU02170.1   4 VAFIGLGQMGAPMASNLLKQGHQLRVFDVNPEAVARLVEKGAQAARSPAEAAEGAEFVITMLPNGDLVRAVLPGdqgVCTTLSPSALVIDMSTIHP 99 
                    89**********************************************************************99999******************* PP

                    HHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE CS
  NAD_binding_2  95 edtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthv 156
                     +t ++ +e++++g++++d+PV  +   A +GtL +++GG+ +++er+kp+l a+g++v+ v
     EHU02170.1 100 LQTDQMINEMRASGFSMMDVPVGRTSDHAIAGTLLLLAGGTLQQIERAKPLLLAMGNEVV-V 160
                    *********************************************************998.4 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.1   6.6e+03      32      48 ..      31      47 ..      27      62 .. 0.66
   2 !   89.6   0.0   1.1e-28   1.8e-25       1     121 [.     165     285 ..     165     286 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.1
  NAD_binding_11 32 Gldpekvlevinassgr 48
                    +++pe+v + +++++ +
      EHU02170.1 31 DVNPEAVARLVEKGAQA 47
                    67788888888777533 PP

  == domain 2  score: 89.6 bits;  conditional E-value: 1.1e-28
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     G G  vKl+nn+++ +  a  +Ea vl+e +Gl +e++l+v+n+  ++   +++  p++vl++d  p F +dl +KDlg+al++a+++++p+pl+
      EHU02170.1 165 GMGIRVKLINNYMSIALNALSAEAAVLCEGLGLPLEVALQVMNGTPAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLG 259
                     78999****************************************************************************************** PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaivrl 121
                     a+ +++y++a+a+g g +D +a++++
      EHU02170.1 260 AASREVYSQARAAGRGRQDWTALLEH 285
                     *********************99875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.9e-11     3e-08       2      73 ..       4      69 ..       3      95 .. 0.88
   2 ?   -1.8   0.0       2.9   4.8e+03      18      47 ..     151     177 ..     139     193 .. 0.64

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.9e-11
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkped 73
                   +++iG G+mg+ +as+ll++g   h+++v  + npe ++ l e+ g+++   + +eaae a++v+  ++  d
     EHU02170.1  4 VAFIGLGQMGAPMASNLLKQG---HQLRVF-DVNPEAVARLVEK-GAQAAR-SPAEAAEGAEFVITMLPNGD 69
                   8********************...****77.**********999.567777.8************8887665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
                    HHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  18 llaagaqpheivvansrnpekaeelaeelg 47 
                    lla g   +e+vva+ +    + +l +++ 
     EHU02170.1 151 LLAMG---NEVVVAGGPGMGIRVKLINNYM 177
                    66777...8888888777776666666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.2e-08   5.2e-05       2      46 ..       4      48 ..       3      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.2e-08
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksl 46
                va iG G+mGa +a+ ++++g++ +++d+++ea+++  ek ++  
  EHU02170.1  4 VAFIGLGQMGAPMASNLLKQGHQLRVFDVNPEAVARLVEKGAQAA 48
                99********************************99988876654 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.8e-07    0.0014       2      44 ..       5      47 ..       4      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.8e-07
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEE CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglev 44
                + iGlG++G  +a +L ++g++  v d ++e+v++l e+g+++
  EHU02170.1  5 AFIGLGQMGAPMASNLLKQGHQLRVFDVNPEAVARLVEKGAQA 47
                679***************5558*****************9886 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.4e-06    0.0072       2      41 ..       3      42 ..       2      51 .. 0.92
   2 ?    0.6   0.0      0.23   3.7e+02     110     137 ..      84     111 ..      74     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.4e-06
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvdklns 41
                    ++++iGlG +G+++a  l ++gh++ + D++ e+v+ l +
      EHU02170.1  3 EVAFIGLGQMGAPMASNLLKQGHQLRVFDVNPEAVARLVE 42
                    689********************************99865 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.23
                     HHHCEEEEEE-S---TTHHHHCHHHHHH CS
  UDPG_MGDP_dh_N 110 alkkgkvvvvkSTvpvgtaeelvkkile 137
                     +l+   +v+  ST+ +  ++++++++ +
      EHU02170.1  84 TLSPSALVIDMSTIHPLQTDQMINEMRA 111
                     5666889*********999999987755 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.039       6      70 ..       3      67 ..       1      77 [. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-H CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPD 70
                ++a iG G  G   a nl  +g ++ v   + ++ ++  ++ +    + aea++ a++v++++P+
  EHU02170.1  3 EVAFIGLGQMGAPMASNLLKQGHQLRVFDVNPEAVARLVEKGAQAARSPAEAAEGAEFVITMLPN 67
                69*************************9999887777777777788899**************96 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.9e-05     0.047      38     109 ..       3      75 ..       1     120 [. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S--STTTTTSB CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhlpltpetrhli 109
                   +v+ iGlG++G  +a  l + g ++ ++d+++++ ++  e+g++ + s  e+ + +++v+ +lp  +  r ++
    EHU02170.1   3 EVAFIGLGQMGAPMASNLLKQGHQLRVFDVNPEAVARLVEKGAQAArSPAEAAEGAEFVITMLPNGDLVRAVL 75 
                   6899*****************************99999999996666****************9877666665 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.4e-05      0.15     133     202 ..       5      66 ..       2      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.4e-05
                      EEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE--- CS
  OCD_Mu_crystall 133 aiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvtvTa 202
                      a+iG G +    +   + + + +++r++d+++ea ++++e+        +a+ s++ea+ega+ v+t+ +
       EHU02170.1   5 AFIGLGQMGAPMA--SNLLKQGHQLRVFDVNPEAVARLVEKGA------QAARSPAEAAEGAEFVITMLP 66 
                      7788887776544..444445689**********999999877......5*****************865 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.17       1      46 [.       4      50 ..       4      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEET CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltse 46
                +a +G+G +G  +a +L k+g++  + + ++  +++l+++G +  ++
  EHU02170.1  4 VAFIGLGQMGAPMASNLLKQGHQLRVFDVNPeAVARLVEKGAQAARS 50
                5789*******************9999999989999*9999887655 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0003      0.48      13      58 ..       2      46 ..       1      64 [. 0.86
   2 ?   -3.3   0.0       5.2   8.5e+03     100     112 ..     226     238 ..     211     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
                  -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT. CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkg 58
                  ++v  iG G+m+  +a++Ll++g + + v+  + e +++l+e+  +
    EHU02170.1  2 AEVAFIGLGQMGAPMASNLLKQGHQ-LRVFDVNPEAVARLVEKGAQ 46
                  67999***************99988.99999999999999998644 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.2
                   HH.S...EEEEE-- CS
  Shikimate_DH 100 kkrk.kplllvDia 112
                   k  + +p +++D+a
    EHU02170.1 226 KG-DlSPAFMIDLA 238
                   33.34789999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2314.59
//
Query:       EHU02171.1  [L=298]
Description: putative sugar kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-58  195.9   0.1    1.2e-57  195.6   0.1    1.0  1  PfkB          pfkB family carbohydrate kinase
     0.0012   18.3   0.1     0.0021   17.5   0.1    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.1   1.3e-61   1.2e-57       1     300 [.       1     285 [.       1     286 [. 0.94

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 1.3e-61
                 EEEEEEEEEEEEEEEEECSSH.TTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEE CS
        PfkB   1 mtkvvviGealidliavsekl.egelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivv 97 
                 mt+++++G+++ d i + e l ++  +  +++++   GG +a  Ava+a+lga+v+fig+vGdD+ G++ll+el++ gv+t+y+ki + +r +  +i+v
  EHU02171.1   1 MTRIACVGITVLDRIWYLETLpHQGGKyVASNYREVGGGPAATAAVAAAKLGAQVDFIGRVGDDDTGKRLLSELNSYGVNTRYTKIFNAARSSQSAILV 99 
                 789****************99*99999899********************************************************************* PP

                 TTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHH CS
        PfkB  98 dedgertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeElea 196
                 d++ger i +++++    +        d+l+e d+ +++++l ++ ++   + ++++a+ +g  +p +ld     + + + el+ l+d +  ++  l++
  EHU02171.1 100 DAEGERIIANYPSPDLPDEA-------DWLAEIDFSQWDAVLADVRWHQGAKCAFTLARRSG--VPTILDGDV--TPQNIAELVTLSDHAAFSAPGLQR 187
                 *************9888888.......69*********************************..*****9999..579********************* PP

                 HHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSS CS
        PfkB 197 ltgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkga 295
                 ltg++  + ++al++++  ++kg  +v vt+G++G+l+ + +  ++ pa + v vvDttGAGD f g+++  l++   ++ea+rfa+avAal ++++g 
  EHU02171.1 188 LTGME--SDASALKKAQM-LTKG--HVYVTQGVQGCLWLDAGRLQHQPA-FHVRVVDTTGAGDVFHGALAFRLAQKPAVAEAVRFASAVAALKCTRPGG 280
                 *****..99999999875.5565..8*************6666655555.89**********************************************9 PP

                 STCSC CS
        PfkB 296 iaslp 300
                 +a +p
  EHU02171.1 281 RAGIP 285
                 98776 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.3e-07    0.0021     124     225 ..     164     268 ..     160     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.3e-07
                   E-.BHHHHHHHHT...---S..SHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEE.TSSEEEEEEEE----S--BTHHHHHHHHHHHHHHC CS
  Phos_pyr_kin 124 tP.NlpEaeaLlg...ekik..teedmkeaakkllklgakaVlikGghlegeeavvtdvly.dgeeveeleaerietknthGtGCtlssaiaaelak 213
                   tP N++E+  L++      +   ++ +  + ++ ++l++ + l kG     ++ v + +l  d ++ ++ +a ++   +t G+G+++  a+a +la+
    EHU02171.1 164 TPqNIAELVTLSDhaaF--SapGLQRLTGMESDASALKKAQMLTKGHVY-VTQGV-QGCLWlDAGRLQHQPAFHVRVVDTTGAGDVFHGALAFRLAQ 256
                   55589999999985332..233455666666666667777889888654.55555.455555*********************************** PP

                   TSSHHHHHHHHH CS
  Phos_pyr_kin 214 gesleeAvkkAk 225
                   +  + eAv+ A 
    EHU02171.1 257 KPAVAEAVRFAS 268
                   ********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2193.97
//
Query:       EHU02172.1  [L=266]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-48  163.6   0.6    4.8e-48  163.1   0.6    1.2  1  DeoRC           DeoR C terminal sensor domain
    2.2e-21   75.3   0.9    5.6e-21   74.0   0.9    1.7  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    1.5e-08   34.4   0.1      3e-08   33.5   0.1    1.5  1  HTH_11          HTH domain
    2.5e-06   27.3   0.1    4.7e-06   26.4   0.1    1.4  1  MarR            MarR family
    3.2e-06   27.0   0.7    0.00087   19.2   0.1    2.5  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    1.4e-05   24.6   0.1    3.2e-05   23.5   0.1    1.6  1  GntR            Bacterial regulatory proteins, gntR family
    1.7e-05   24.6   0.1    3.7e-05   23.5   0.1    1.5  1  MarR_2          MarR family
    3.4e-05   23.3   0.2    6.7e-05   22.4   0.2    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
      4e-05   23.5   0.0    0.00011   22.1   0.0    1.8  1  HTH_29          Winged helix-turn helix
     0.0001   22.3   0.1    0.00025   21.0   0.1    1.6  1  HTH_20          Helix-turn-helix domain
    0.00095   19.2   0.0     0.0019   18.2   0.0    1.4  1  HTH_Mga         M protein trans-acting positive regulator (MG
     0.0013   18.4   0.0     0.0028   17.3   0.0    1.5  2  DDRGK           DDRGK domain
     0.0017   18.5   0.0     0.0033   17.6   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0017   18.7   0.6     0.0072   16.6   0.1    2.1  2  Rrf2            Transcriptional regulator
     0.0057   16.5   0.0      0.014   15.3   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0076   16.1   0.1      0.015   15.2   0.1    1.5  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0077   16.9   1.2        0.4   11.4   0.0    2.9  3  RPA_C           Replication protein A C terminal
  ------ inclusion threshold ------
       0.02   14.1   0.7       0.45    9.6   0.1    2.2  2  Sugar-bind      Putative sugar-binding domain
      0.023   14.6   0.1      0.047   13.6   0.1    1.5  1  HTH_12          Ribonuclease R winged-helix domain
      0.031   14.5   0.0      0.075   13.2   0.0    1.7  1  HTH_17          Helix-turn-helix domain
       0.04   13.3   0.1      0.068   12.5   0.1    1.5  1  DUF1670         Protein of unknown function (DUF1670)
      0.043   13.2   0.0        0.1   12.0   0.0    1.6  1  CoA_trans       Coenzyme A transferase
       0.06   13.5   0.0       0.13   12.4   0.0    1.6  1  HTH_28          Helix-turn-helix domain
      0.089   12.6   0.2       0.17   11.7   0.2    1.5  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
       0.09   12.6   0.1       0.21   11.4   0.0    1.6  1  TFIIE_alpha     TFIIE alpha subunit
      0.094   12.9   1.4       0.41   10.9   0.0    2.5  3  SgrR_N          Sugar transport-related sRNA regulator N-term
       0.13   12.6   0.2       0.61   10.5   0.0    2.0  2  DUF4228         Domain of unknown function (DUF4228)


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.6   7.2e-51   4.8e-48       2     160 .]      79     237 ..      78     237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 7.2e-51
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 +++eKr IA a a++i+dg+t+f+ +GtT++++araL ++k+l+v+Tnsl+va+ L + ++++v++ GG++r++++ ++gp+++ ++++f++d+++ ++
  EHU02172.1  79 QTDEKRSIADAIADYIPDGSTVFITIGTTVEHVARALMNHKHLRVITNSLRVAHILYKCPQFEVMVPGGTLRPHNGGIIGPVTTAFVASFRADYLVTSM 177
                 789************************************************************************************************ PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                  +i+++g l+++d +ea+v++++++++r+++l+aD++Kf+ +a v+++++ + +al+tDk
  EHU02172.1 178 GAIESDGALLEFDVNEANVAQTMMAHSRHILLAADHTKFQASAAVEMGSVAQATALFTDK 237
                 ***********************************************************6 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.9   8.4e-24   5.6e-21       1      56 [.      11      66 ..      11      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 8.4e-24
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                R++ +l l++++g+++++el+ ll+vS++T+RRD+++L+eqgl+tR+hGGa   ss
  EHU02172.1 11 RHDHLLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASS 66
                9**************************************************98876 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   4.5e-11     3e-08       3      43 ..      13      52 ..      11      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.5e-11
      HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                 ++l l+ ++rg+++++eLA  L+vS++tvrrdI++L+e+g
  EHU02172.1 13 DHLLSLI-AERGYMNIDELAVLLDVSTQTVRRDIRKLSEQG 52
                5666666.*******************************99 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   7.1e-09   4.7e-06       7      50 ..      14      57 ..       9      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 7.1e-09
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRs 50
                ++L +++e+g +++ eLa  l vs+ tv r +++L ++Gli+R 
  EHU02172.1 14 HLLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRH 57
                89*****************************************6 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.3e-06   0.00087      22      54 ..      25      57 ..      13      67 .. 0.87
   2 ?    5.8   0.1      0.02        13      31      54 ..     104     127 ..     103     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.3e-06
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisrg 54
                ++ +elA +l ++ +tv r +++L+++gli+r+
  EHU02172.1 25 MNIDELAVLLDVSTQTVRRDIRKLSEQGLITRH 57
                55689*************************964 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.02
                 TTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2  31 lGltretvsrilseLkreglisrg 54 
                 +G+t e+v r+l   k   +i+++
  EHU02172.1 104 IGTTVEHVARALMNHKHLRVITNS 127
                 8************99999999843 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   4.7e-08   3.2e-05      27      60 ..      27      60 ..      19      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4.7e-08
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR 27 ereLaaefgVsrttvReALrrLeaeglverrqgr 60
                  eLa  ++Vs++tvR+ +r+L+++gl++r++g+
  EHU02172.1 27 IDELAVLLDVSTQTVRRDIRKLSEQGLITRHHGG 60
                579*****************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   5.6e-08   3.7e-05       9      61 ..      13      63 ..       5      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.6e-08
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                + L+ L ++ g+ +++ ela  l++s ++v r +++L+++GL++r  g +++R
  EHU02172.1 13 DHLLSLIAERGY-MNIDELAVLLDVSTQTVRRDIRKLSEQGLITRHHG-GAGR 63
                555555555556.9*****************************99854.4555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2     1e-07   6.7e-05       8      48 .]      15      55 ..      14      55 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-07
      HTH_24  8 ILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +L+l+ + + +++ eLA  l++S +tv+r +++L e+GlI+
  EHU02172.1 15 LLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLIT 55
                699*************************************6 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-07   0.00011       7      55 ..      19      64 ..      14      74 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-07
      HTH_29  7 llaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                 +++G +++ ++A ll++s +tv+r ++   e G   l+ r+ +g++r 
  EHU02172.1 19 IAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQG---LITRHHGGAGRA 64
                3456666***************************...666555566664 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   3.8e-07   0.00025      14      57 ..      14      57 ..       3      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.8e-07
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                 +l+++a+++ +   ela +ld+s +t+++ +r+L+e gL+++ 
  EHU02172.1 14 HLLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRH 57
                567777999999999**************************986 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.8e-06    0.0019      10      45 ..      15      49 ..      13      53 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.8e-06
     HTH_Mga 10 LlelLteneksltldelakeLglseltlqsdiseLn 45
                Ll+l+ e ++++++dela  L+ s  t++ di++L 
  EHU02172.1 15 LLSLIAE-RGYMNIDELAVLLDVSTQTVRRDIRKLS 49
                8999999.*************************996 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.3e-06    0.0028     102     144 ..      13      55 ..       4      56 .. 0.92
   2 ?   -2.9   0.0       6.6   4.4e+03      93     109 ..      79      95 ..      67     103 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS- CS
       DDRGK 102 eefinyikekKvvlleelavkfklktqevierikeLeeqgslt 144
                 ++++  i e+ +++++elav ++++tq v+  i++L eqg +t
  EHU02172.1  13 DHLLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLIT 55 
                 5678899*********************************996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.6
                 XXXXXXXHHHHHHHHHH CS
       DDRGK  93 saeeeeklleefinyik 109
                 +++e+  + + + +yi 
  EHU02172.1  79 QTDEKRSIADAIADYIP 95 
                 33333336777777775 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     5e-06    0.0033      15      56 ..      17      58 ..      14      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5e-06
                    HHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 15 tlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    +l  e+++    +la  L+vs  +V   ++kL+++G++  ++
      EHU02172.1 17 SLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRHH 58
                    567799999****************************97665 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.1e-05    0.0072      21      63 ..      20      62 ..      14      65 .. 0.84
   2 ?   -0.8   0.1       3.1     2e+03      35      54 ..     114     133 ..     106     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-05
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-T CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgG 63
                +e++ ++++e+a   ++s + +++ ++kL+++gl++   G  G
  EHU02172.1 20 AERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRHHGGAG 62
                3444599******************************999877 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.1
                 HTS-HHHHHHHHHHHHHTTS CS
        Rrf2  35 qnispsylekilakLrkagl 54 
                   +++++l+ i++ Lr a +
  EHU02172.1 114 ALMNHKHLRVITNSLRVAHI 133
                 45789999999999998876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-05     0.014      17      57 ..      18      59 ..      13      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
                HH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 17 Ll.klgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                L+ ++g +++de+a  l+v+ ++v + +r+L++ Gl++r +g
  EHU02172.1 18 LIaERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRHHG 59
                555999********************************9886 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.2e-05     0.015       7      46 ..      15      55 ..      14      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-05
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                +L+l ae g + + ela  l++s  tv++  +kL e+GL++
  EHU02172.1 15 LLSLIAErGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLIT 55
                6899999899*****************************96 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0    0.0006       0.4      68      97 ..      25      54 ..      12      58 .. 0.93
   2 ?    1.5   0.0       0.7   4.7e+02      33      98 ..      70     135 ..      55     137 .. 0.70
   3 ?    1.2   0.0      0.86   5.7e+02      25      78 ..     176     232 ..     170     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0006
                EEHHHHHHHSTSXHHHHHHHHHHHHHTTSE CS
       RPA_C 68 vhvdeiaqklrlsvndvkqavdeLsneGii 97
                +++de+a  l +s ++v++ +++Ls++G+i
  EHU02172.1 25 MNIDELAVLLDVSTQTVRRDIRKLSEQGLI 54
                89**************************98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.7
                 XXXXXXXXXXXX.XSXHHHHHHHHHHHH...SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTSEE CS
       RPA_C  33 galsgnqaklankgltalaqqvlnlikq..speseeGvhvdeiaqklrlsvndvkqavdeLsneGiiY 98 
                 +a+++ + +++   +   a+ + ++i +   +  + G  v+ +a++l ++ + ++ ++++L  + i+Y
  EHU02172.1  70 TAFEQREVSQTD-EKRSIADAIADYIPDgsTVFITIGTTVEHVARAL-MNHKHLRVITNSLRVAHILY 135
                 444444444443.6777788888888887677778899999999999.99999999988887666665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.86
                 XXXXXXXXXXXXXXXXXXXX...XSXHHHHHHHHHHHH..SXSTTTEEHHHHHHHST CS
       RPA_C  25 ggsamgtdgalsgnqaklan..kgltalaqqvlnlikq.speseeGvhvdeiaqklr 78 
                 +++a+++dgal   + + an  +++ a+ + +l +    +++  + v++  +aq++ 
  EHU02172.1 176 SMGAIESDGALLEFDVNEANvaQTMMAHSRHILLAADHtKFQASAAVEMGSVAQATA 232
                 566777888888888888887777777777776655555999999999999988874 PP

>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00067      0.45      24      82 ..      67     124 ..      61     131 .. 0.76
   2 ?    2.9   0.1     0.077        51     190     238 ..     181     226 ..     173     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00067
                 EESSTSTT.CHHHHHHHHHHHHHHHHH--TTEEEEE-SSHHHHHHHHHTHHCCHTCEEEE CS
  Sugar-bind  24 vvpddade.edvlealgraaaqllesllkdgdvvgvgwGrtlsavaealtpkslrdvkvv 82 
                 vv +  ++ e  +++  r +a+ + +++ dg++v ++ G+t+++va+al    +++++v+
  EHU02172.1  67 VVNTAFEQrEVSQTDEKRSIADAIADYIPDGSTVFITIGTTVEHVARALMN--HKHLRVI 124
                 55555555333356666788999999**********************988..4555554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.077
                 ETTS-BCCHCHCCCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTT CS
  Sugar-bind 190 DaeGevvetelnerviglsledlrkipkviavAggesKaeAilaaLrgg 238
                  ++G ++e ++ne  ++ ++    ++++ i++A++ +K++A  a+  g 
  EHU02172.1 181 ESDGALLEFDVNEANVAQTMM---AHSRHILLAADHTKFQASAAVEMGS 226
                 567777787888777776665...67999************87765544 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   7.1e-05     0.047      29      56 ..      35      63 ..      15      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.1e-05
      HTH_12 29 digeravRyrLrkleerglt.rrvgyagr 56
                d+++++vR+ +rkl e+gl+ r +g agr
  EHU02172.1 35 DVSTQTVRRDIRKLSEQGLItRHHGGAGR 63
                7899**************65155666676 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00011     0.075       1      23 [.      24      46 ..      24      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      HTH_17  1 lltveEaAelLgvsrstvyrlir 23
                +++++E+A lL+vs +tv+r ir
  EHU02172.1 24 YMNIDELAVLLDVSTQTVRRDIR 46
                79*****************9665 PP

>> DUF1670  Protein of unknown function (DUF1670)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1    0.0001     0.068     109     141 ..      28      59 ..      21     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
     DUF1670 109 sDlalllgvstrtvskqvkeyqeeegivlptrG 141
                  +la+ll vst+tv+++++++  e+g +    G
  EHU02172.1  28 DELAVLLDVSTQTVRRDIRKL-SEQGLITRHHG 59 
                 579******************.88888876665 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015       0.1       3      47 ..      85     124 ..      83     132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                 HHHHHHCTT--TTEEEEE-SBTTBTHH.HHHHHHHHHHTTTSEEEE CS
   CoA_trans   3 taaeavakeikdGmtvavGGFgligiP.ealiaalarsgvkdltvi 47 
                 ++a+a+a +i+dG+tv++     ig+  e+ ++al++  +k l vi
  EHU02172.1  85 SIADAIADYIPDGSTVFIT----IGTTvEHVARALMN--HKHLRVI 124
                 799****************....99550444444443..3444444 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0002      0.13       9      48 ..      19      57 ..      14      63 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0002
      HTH_28  9 la.aGh.svreaArelgisrrtvyrWikryeegGiagLvprr 48
                +a +G  +++e+A +l +s +tv+r i+++ e+G+    +r+
  EHU02172.1 19 IAeRGYmNIDELAVLLDVSTQTVRRDIRKLSEQGL---ITRH 57
                5546878**********************999775...7775 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00026      0.17       8      41 ..      15      48 ..      14      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                   +L+++ e + +   eLA  + +S++tv+r +r+L
     EHU02172.1 15 LLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKL 48
                   899999999999*****************99998 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00032      0.21      14      60 ..      11      57 ..       1      61 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEE CS
  TFIIE_alpha 14 eavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkyk 60
                  +   l  ++e+g ++ ++la +l +  + +r+ + +L e++l+  +
   EHU02172.1 11 RHDHLLSLIAERGYMNIDELAVLLDVSTQTVRRDIRKLSEQGLITRH 57
                 4667899999*********************************9765 PP

>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00062      0.41      20      75 ..      25      80 ..      17      91 .. 0.80
   2 ?   -1.6   0.1       4.6   3.1e+03      20      44 ..     106     129 ..     103     135 .. 0.73
   3 ?   -0.9   0.0       2.7   1.8e+03      75      98 ..     216     240 ..     203     254 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00062
      SgrR_N 20 vtLqelAdvlfCsrRhartlLkkmqeegwle.WqpevGRgkrsrLtfllepeelqeq 75
                ++++elA +l  s++ +r  ++k++e+g+++  + ++GR   s+++  +e+ e+++ 
  EHU02172.1 25 MNIDELAVLLDVSTQTVRRDIRKLSEQGLITrHHGGAGRA-SSVVNTAFEQREVSQT 80
                6799**************************7256778886.4667777777777665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.6
      SgrR_N  20 vtLqelAdvlfCsrRhartlLkkmq 44 
                 +t++ +A +l+  ++h r++ + + 
  EHU02172.1 106 TTVEHVARALM-NHKHLRVITNSLR 129
                 78888888887.5788888877665 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.7
      SgrR_N  75 qlaeklleqgkiekalalld.kdka 98 
                  +a+ ++e g + +a al   k + 
  EHU02172.1 216 FQASAAVEMGSVAQATALFTdKLPG 240
                 5678889999999999988733333 PP

>> DUF4228  Domain of unknown function (DUF4228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.5   2.4e+03      17      50 ..     110     143 ..      97     159 .. 0.77
   2 ?   10.5   0.0   0.00091      0.61      24      64 ..     182     222 ..     173     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.5
     DUF4228  17 kvvkvvhpdGeveelsrpvtAaevmaenPghfvc 50 
                 +v++ ++   +++ ++ ++++a+++ + P++ v 
  EHU02172.1 110 HVARALMNHKHLRVITNSLRVAHILYKCPQFEVM 143
                 5666667777888899999999999999987555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00091
     DUF4228  24 pdGeveelsr.pvtAaevmaenPghfvcdadslsigkrikpL 64 
                 +dG + e++   + +a+ m+++++h++  ad+ +++  ++++
  EHU02172.1 182 SDGALLEFDVnEANVAQTMMAHSRHILLAADHTKFQ-ASAAV 222
                 6899999998459*******************8888.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1940.21
//
Query:       EHU02173.1  [L=128]
Description: soluble cytochrome b562 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-32  109.7   8.5    1.1e-31  109.4   8.5    1.1  1  Cytochrom_B562  Cytochrome b562
     0.0086   16.2   0.6      0.036   14.2   0.4    1.9  2  DUF4363         Domain of unknown function (DUF4363)
  ------ inclusion threshold ------
      0.037   14.7   0.6       0.16   12.6   0.0    2.2  2  TPR_4           Tetratricopeptide repeat
       0.06   13.5   1.2       0.06   13.5   1.2    1.9  2  TPR_2           Tetratricopeptide repeat
       0.11   12.7   0.6       0.15   12.1   0.6    1.5  1  DUF1993         Domain of unknown function (DUF1993)


Domain annotation for each model (and alignments):
>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   8.5   3.2e-35   1.1e-31       1     102 []      24     128 .]      24     128 .] 0.99

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 3.2e-35
  Cytochrom_B562   1 dlkeeMkqmkkalkqvakaddaeelkkalkelraaaedakeatpsklek...dseeqkdYqeGldklidqldkaealakagkleeakaalkelkd 92 
                     +l+++Mk+m+  +k++  a++a++l+k l +lra aedak++tp+kle+   ds+e+kd+++G+d+li+q+dka+alak+gkl+eaka++++l +
      EHU02173.1  24 SLEHDMKEMAGIYKSLDGAKSADQLHKMLGDLRAKAEDAKKGTPDKLEGkapDSPEMKDFHKGMDDLIAQIDKADALAKQGKLDEAKAEAQKLAA 118
                     589******************************************************************************************** PP

  Cytochrom_B562  93 lrkeyHkkfk 102
                     +r+e+Hkkf+
      EHU02173.1 119 IRNENHKKFR 128
                     ********97 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.29     1e+03       9      29 ..      43      63 ..      35      70 .. 0.80
   2 !   14.2   0.4     1e-05     0.036       8      50 ..      84     126 ..      79     128 .] 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.29
     DUF4363  9 kstdelsekleeleeaiened 29
                ks+d+l ++l +l++++e+ +
  EHU02173.1 43 KSADQLHKMLGDLRAKAEDAK 63
                788888888888888887655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1e-05
     DUF4363   8 kkstdelsekleeleeaienedweeakekleelekeWekkkkk 50 
                 +k +d+l ++++++++ +++++ +eak ++++l    ++++kk
  EHU02173.1  84 HKGMDDLIAQIDKADALAKQGKLDEAKAEAQKLAAIRNENHKK 126
                 67789****************************9999999887 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.96   3.5e+03       4      12 ..       6      14 ..       4      16 .. 0.80
   2 ?   12.6   0.0   4.6e-05      0.16       3      25 ..      92     114 ..      90     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.96
       TPR_4  4 llaLArall 12
                 ++LA all
  EHU02173.1  6 MSLLAVALL 14
                678999986 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.6e-05
       TPR_4   3 allaLArallalGdldeAralle 25 
                 a+++ A al+ +G ldeA a ++
  EHU02173.1  92 AQIDKADALAKQGKLDEAKAEAQ 114
                 78999*************99875 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4     5e+03      11      21 ..      49      60 ..      47      62 .. 0.56
   2 ?   13.5   1.2   1.7e-05      0.06       5      32 ..      94     121 ..      91     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
       TPR_2 11 yyklgdy.eeAl 21
                +  lgd+ ++A+
  EHU02173.1 49 HKMLGDLrAKAE 60
                556666655555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                    ++a++k+g+++eA++  +k  ++  
  EHU02173.1  94 IDKADALAKQGKLDEAKAEAQKLAAIRN 121
                 5689******************998866 PP

>> DUF1993  Domain of unknown function (DUF1993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   4.3e-05      0.15      58     116 ..      61     121 ..      22     128 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                 HHHHHHHCHHCT-..GS----S.-SSHHHHHHHHHHHHHHHHCS-GGGHCCCCCEEEE.C. CS
     DUF1993  58 dtakkavarlagk..eppsledeektfadlrariaktialLesvdpekldakeekevelkl 116
                 d+ k +  +l+gk  ++p+++d  k ++dl+a+i+k+ al ++ + ++ +a+++k +++++
  EHU02173.1  61 DAKKGTPDKLEGKapDSPEMKDFHKGMDDLIAQIDKADALAKQGKLDEAKAEAQKLAAIRN 121
                 56677778888885566789999****************9999777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 947.41
//
Query:       EHU02174.1  [L=446]
Description: putative peptide antibiotic peptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-61  208.5   1.1    3.3e-61  207.6   0.0    1.8  2  PmbA_TldD  Putative modulator of DNA gyrase
  ------ inclusion threshold ------
      0.093   11.6   0.1       0.15   10.9   0.1    1.4  1  DUF3863    Domain of Unknown Function with PDB structure (DUF


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5      0.15   1.3e+03      53      68 ..      12      27 ..       2      30 .. 0.68
   2 !  207.6   0.0   3.7e-65   3.3e-61       2     279 .]      32     323 ..      31     323 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHCC CS
   PmbA_TldD 53 ealeeaveraveiakl 68
                +ale+a+ +a+e+ak 
  EHU02174.1 12 KALEQAIAQALELAKA 27
                5888999999998865 PP

  == domain 2  score: 207.6 bits;  conditional E-value: 3.7e-65
                 EEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEE...ESSHHHHHHHHHHHHHHCCS---TT-....................GGS-H CS
   PmbA_TldD   2 aevrleesestsvrfengevetnsssedsglgvrvikggrlgfastldtsdealeeaveraveiaklapedpea....................eevsa 80 
                 aev ++++++  v+ + geve++++++d  lg++v++++r g+as++d+s +a++++v++a++ia+++++dp+a                    +e++a
  EHU02174.1  32 AEVAVSKTTGIGVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPDAIKRTVQAAIDIARYTSPDPFAgpadaellaydapdldlyhpWEIDA 130
                 89*****************************************999999999*********************************************** PP

                 HHHHHHHHHHHHH.CHCSTTEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE.STCSET.EEEEEEEE......SSHHHS..S CS
   PmbA_TldD  81 eekielleelekalrsadpkienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsviaddggsgd.gmgggsgy......edleeedle 172
                 + +i+l++++e+a+ +ad++i+n++g +++      s++ + k+++nS+G+  ++ ++r+sls  via+    +d +m+++++y      edl++  ++
  EHU02174.1 131 DYAIQLAAQAEQAALQADKRITNTEGGSFN------SHV-GIKVFGNSHGMLQSYCSSRHSLSSCVIAE----QDgNMERDYAYtigraiEDLKS--AD 216
                 *******************88888866666......444.88**************************4....2335888999999876655555..77 PP

                 SHHHHHHHHHHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHHTT--TTTT-TTSB-S-TT--EEEETT-......-SB-TTSBB---EEE CS
   PmbA_TldD 173 eiaeeaaekalasleakplppgkypVvlspeavgsllheavghaleadavlegrSflkdklGekvaselltivddpts.gglgsypfDdEGvptqrtvl 270
                  +++e a+++l +l +++l + k pV+++pe++  l++ +vg a+++++v+++++fl d++G+++++e+lti + p+  +gl+s+pfD+EGv tq +++
  EHU02174.1 217 WVGAECARRTLSRLAPRKLDTMKAPVIFAPEVATGLFGHLVG-AISGSSVYRKSTFLLDAMGKQILPEWLTIQEQPHLlKGLASTPFDSEGVRTQARDI 314
                 7*************************************9998.**************999*****************99******************** PP

                 EETTEE--- CS
   PmbA_TldD 271 IenGvLkny 279
                 I++GvL+++
  EHU02174.1 315 IKDGVLQTW 323
                 *******96 PP

>> DUF3863  Domain of Unknown Function with PDB structure (DUF3863)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.7e-05      0.15     254     328 ..     354     428 ..     311     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.7e-05
     DUF3863 254 ihldkgvarnglGwvtniyeaqmvsevakelildaletwvtelkkrwsdlelvtiGefGsiwrakhktnedlayl 328
                   ++  +++ g G v +    q vs ++ ++   a   wv +   +++  e++  G++G++wr+     +d++ +
  EHU02174.1 354 HSFNDMLKQMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLGDMWRNIVTVGDDIETR 428
                 446777888999999999999******************************************998888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3403.17
//
Query:       EHU02175.1  [L=181]
Description: uncharacterized DUF615 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-57  191.7   9.8    8.7e-57  191.4   9.8    1.1  1  DUF615       Protein of unknown function (DUF615)
  ------ inclusion threshold ------
       0.14   12.6   2.1       0.22   11.9   0.2    2.3  2  RICH         RICH domain
       0.43   10.9   2.2       0.69   10.3   2.2    1.5  1  Radical_SAM  Radical SAM superfamily
        0.8    9.6   9.4       0.63    9.9   1.7    2.0  2  GvpL_GvpF    Gas vesicle synthesis protein GvpL/GvpF


Domain annotation for each model (and alignments):
>> DUF615  Protein of unknown function (DUF615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   9.8   1.9e-60   8.7e-57       2     154 .]      25     175 ..      24     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.4 bits;  conditional E-value: 1.9e-60
      DUF615   2 rpSksqlKreaealqklgeeLaaLskkqlkklpldeelldalleakrikshrearrRqlqyigkllReadveairaalealknkseeetaalhelerwr 100
                 ++Sks++Kr+ae+l++lg eL++L k++l+k+plde+l+ ++++a+rik  +e+rrRqlq igkl+R+ dve+ir+al++lkn+++++ a +h+le++r
  EHU02175.1  25 WVSKSEIKRDAEELKRLGAELVDLGKNSLDKIPLDERLRTEIELAQRIK--KEGRRRQLQLIGKLMRSIDVEPIRTALDKLKNRHNQQVALFHKLEMLR 121
                 68***********************************************..69********************************************** PP

      DUF615 101 drLiaeddaaleelleeypevDrqeLRqlirnarkekeknkppkayreLfqlLr 154
                 drLi+e+d+a++++l++yp++Drq+LR++irna+kek+ nkppk++r++fq+Lr
  EHU02175.1 122 DRLIEEGDEAMTDVLALYPQADRQQLRSMIRNAQKEKAGNKPPKSARQIFQYLR 175
                 *****************************************************8 PP

>> RICH  RICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.62   2.8e+03      24      41 ..      70      87 ..      60      94 .. 0.76
   2 ?   11.9   0.2   4.8e-05      0.22      22      58 ..      96     134 ..      88     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.62
        RICH 24 kqldKrkhtqnvaLikkL 41
                +  +K+   + ++Li kL
  EHU02175.1 70 QRIKKEGRRRQLQLIGKL 87
                667788888888888887 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.8e-05
        RICH  22 ikkqld..KrkhtqnvaLikkLseIkteyLyelkvlkek 58 
                 i++ ld  K++h q vaL+ kL+ ++ + + e +++ + 
  EHU02175.1  96 IRTALDklKNRHNQQVALFHKLEMLRDRLIEEGDEAMTD 134
                 55666622689*************999988887777665 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.2   0.00015      0.69      29     123 ..      26     152 ..       4     180 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC.......................CCTEEEEEEECSSCHG............. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxx............. RF
  Radical_SAM  29 lsveeileevkelkaekgvkevilgggepllypdfvellerlakla.......................vpgiritvetngtlpd............. 90 
                  +s+ ei++ ++el ++  + e++ +g + l+  ++ e l+ +++la                       v       e   t +d             
   EHU02175.1  26 VSKSEIKRDAEEL-KRL-GAELVDLGKNSLDKIPLDERLRTEIELAqrikkegrrrqlqligklmrsidV-------EPIRTALDklknrhnqqvalf 114
                  68899********.588.9999999*************************87788887777744444442.......333333333333344555555 PP

                  .......HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTC CS
                  .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 .......eeklerllelgvdrvslgleaaddekvlklmnr 123
                         ++ +e+ +e+ +d+++l  +a      + ++ r
   EHU02175.1 115 hklemlrDRLIEEGDEAMTDVLALYPQADRQQ-LRSMI-R 152
                  55555557777777777777777777777776.55544.3 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.1    0.0065        29     120     174 ..      25      83 ..       9      94 .. 0.63
   2 ?    9.9   1.7   0.00014      0.63     101     189 ..      96     181 .]      92     181 .] 0.93

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0065
   GvpL_GvpF 120 wdeealleelleedpelrelreeieaases.......gtayllrkrlgqrleealeerreel 174
                 w     ++e+ ++ +el++l +e+ + +++         +   +++l qr++++ ++r+ +l
  EHU02175.1  25 WVS---KSEIKRDAEELKRLGAELVDLGKNsldkiplDERLRTEIELAQRIKKEGRRRQLQL 83 
                 444...67888889999999999998887655544443344444444555555555544444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00014
   GvpL_GvpF 101 lreaLerlagkvEygvkvlwdeealleelleedpelrelreeieaasesgtayllrkrlgqrleealeerreelaeeleeaLaplaeev 189
                 +r+aL++l++++  +v ++++ e l+++l+ee +e+     ++  +++   +++lr  ++ + +e+  ++  + a+++ + L++lae+v
  EHU02175.1  96 IRTALDKLKNRHNQQVALFHKLEMLRDRLIEEGDEAMTDVLALYPQAD---RQQLRSMIRNAQKEKAGNKPPKSARQIFQYLRELAEAV 181
                 799********************************9999988888877...6899999****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1359.91
//
Query:       EHU02176.1  [L=335]
Description: fructose-1,6-bisphosphatase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-84  279.5   0.1    1.2e-83  279.2   0.1    1.1  1  FBPase    Fructose-1-6-bisphosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.2   0.1   6.8e-88   1.2e-83       2     189 .]       3     192 ..       2     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 279.2 bits;  conditional E-value: 6.8e-88
      FBPase   2 tltrfiveeqkeeanatgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivlerek 100
                 tl +five+q+++++atgeltal+sa+kl++kii+++++ka+lv++lG++g eNv+G++q+klD++a+e l++alka+++v+ ++SEEe+e++++e+e+
  EHU02176.1   3 TLGEFIVEKQHDFPHATGELTALISAIKLGAKIIHRDINKAGLVDILGASGVENVQGEQQMKLDLFANEKLKAALKARGIVAGIASEEEDEFVIFEGEE 101
                 9************************************************************************************************** PP

      FBPase 101 egkyvvafDPlDGSSnidtnvsvGtifsiyrkks.edeetti.dvlqpGkeqvAAgyvvYGsstmlVltlgaGvngFtlDpslgefiltke 189
                 +gkyvv++DPlDGSSnid+nvsvGtifsiyr++s  ++++ + d++qpG++qvAAgyvvYGsstm+V+t+g+Gv++Ft+Dpslg+f+l++e
  EHU02176.1 102 NGKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVSePGTPVVEaDFMQPGNKQVAAGYVVYGSSTMMVYTTGCGVHAFTYDPSLGVFCLSHE 192
                 ********************************99767777777*********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2687.17
//
Query:       EHU02177.1  [L=519]
Description: methyl-accepting chemotaxis protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-52  176.8  16.5    3.2e-52  176.8  16.5    3.1  3  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si
    7.5e-17   61.8   4.0    7.5e-17   61.8   4.0    4.8  5  TarH             Tar ligand binding domain homologue
    2.4e-11   43.9   3.8    3.1e-10   40.3   1.0    3.8  3  HAMP             HAMP domain
    1.9e-08   34.1   2.7    1.9e-08   34.1   2.7    3.5  4  4HB_MCP_1        Four helix bundle sensory module for signal 
  ------ inclusion threshold ------
       0.15   11.9   0.2       0.15   11.9   0.2    3.0  3  SKA1             Spindle and kinetochore-associated protein 1
       0.17   12.2  13.6        2.2    8.7   0.9    4.6  5  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.37   10.8  14.9        1.3    8.9   0.0    4.9  5  Sec20            Sec20
        5.6    7.6   7.9        3.5    8.3   0.9    2.6  2  Adaptin_binding  Alpha and gamma adaptin binding protein p34
        6.2    5.9  14.3       0.44    9.7   1.4    2.7  3  Taxilin          Myosin-like coiled-coil protein
          8    6.6  11.0       0.51   10.5   1.2    2.9  3  CHDCT2           CHDCT2 (NUC038) domain


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.1   3.7e+03     112     136 ..      82     106 ..      72     124 .. 0.66
   2 ?    4.1   2.3      0.02        36      94     166 ..     254     323 ..     244     333 .. 0.62
   3 !  176.8  16.5   1.8e-55   3.2e-52       3     170 ..     328     481 ..     325     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHCCHHHHHHHH CS
   MCPsignal 112 trqrveegselveetgealkeivea 136
                   q ++++   ve+++++lk+ v+a
  EHU02177.1  82 GAQVTKTAQADVESSQRNLKRFVDA 106
                 5555566667788888888887775 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.02
                 HH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  94 liieiqkeindsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqave 166
                 +++ +q+   dsv+ + e+  ++++gs + +  +  l+   ++++e a+++++ aa+ e+++a++   +++ +
  EHU02177.1 254 ALAGMQQALRDSVNKVREAGLKIDSGSRELAAGNVHLS---QRTEESAASLEQTAASMEQLTATVRLNASNAQ 323
                 55677888889999999999999999998887776664...34444444444444444444444443333333 PP

  == domain 3  score: 176.8 bits;  conditional E-value: 1.8e-55
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
   MCPsignal   3 laeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqke 101
                 la+  s++A++g ++v+ v+++m+ei++s++ i di++Vid+ia+QTN+LALNAa+EAARAGeqGrGFaVVA+EVr+LA+rsa aak+i++li      
  EHU02177.1 328 LANAVSDSADRGAEVVNYVMEKMREITESANRIGDILSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVANEVRTLAQRSASAAKKIRTLI------ 420
                 6788899**************************************************************************************...... PP

                 ........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 102 indsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevak 170
                         +++++rv+egse++ ++ge++ +i+ +v +v++l++ei+ aseeqs++i++vn+av+++++
  EHU02177.1 421 --------SDSQTRVKEGSEMATRAGETMDDIAGEVMRVTALMKEISMASEEQSRGIDQVNHAVTQMDE 481
                 ........9**********************************************************97 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   4.0   4.2e-20   7.5e-17       3     168 ..       2     168 ..       1     173 [. 0.92
   2 ?   -1.5   1.6       1.1     2e+03      11      33 ..     194     216 ..     189     238 .. 0.76
   3 ?   -0.8   2.7      0.72   1.3e+03      52     122 ..     260     329 ..     243     355 .. 0.61
   4 ?    1.2   0.1      0.17     3e+02     131     171 ..     378     418 ..     371     424 .. 0.85
   5 ?   -2.1   3.8       1.8   3.2e+03      55      93 ..     456     496 ..     430     515 .. 0.51

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 4.2e-20
                 XXXXXXXXXXXXXXXXXXXXXXXXSSSSSSHHHHHHHCHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHHHHHHHH CS
        TarH   3 krisIrtrLllvlallgvLllvsgglglsglsrsndalrevytnrlqqqaaLaearvsllqaRltLnragiaaladeaedakellaraeeslaqseeaw 101
                 k++s+rt+Ll++la++ +Lll+++++g+ ++++ n++l+ +++ +      L  +++ l++aR     a   +  +  ++ +++ ++a++ ++ s+++ 
  EHU02177.1   2 KQLSLRTGLLALLAFMTLLLLAVSVMGIVAINKGNRSLDVINRIQGIELNSLYRSNADLMRARASAALAVRKIEIGLLDEGAQVTKTAQADVESSQRNL 100
                 89***************************************999999999*************987764444444555555****************** PP

                 HHHHTS---GGGHH.HHHHHHHHHHH.HHHHHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH CS
        TarH 102 kaYlalprtaeeeealaaelkakyka.lqdglapliaaleagnleaffdlptqkiqplfealyaayea 168
                 k++ ++ + ++e +  a++++++yk  l++g+ p+++al +   +++ +l   k++pl  ++++a+e+
  EHU02177.1 101 KRFVDAGTVTAEGKIMADAIASSYKDyLDQGILPMMKALDKQYNDEYYQLLEGKLEPLSAKYTKAVET 168
                 ******99999*****************************************************9987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 XXXXXXXXXXXXXXXXSSSSSSH CS
        TarH  11 LllvlallgvLllvsgglglsgl 33 
                 L++v + l+vLllv  ++ l  +
  EHU02177.1 194 LIAVAVGLSVLLLVLAWVLLRRM 216
                 8999999*****99999887666 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHHHHHHHHHHHHTS---GGGHH.HHHHHH CS
        TarH  52 aaLaearvsllqaRltLnragiaaladeaedakellaraeeslaqseeawkaYlalprtaeeeealaaelk 122
                 +aL ++ +++ +a l+++  g + la+ +   +++ ++  +sl+q  ++ ++  a+ r ++ +++ a +l+
  EHU02177.1 260 QALRDSVNKVREAGLKIDS-GSRELAAGNVHLSQRTEESAASLEQTAASMEQLTATVRLNASNAQQAHQLA 329
                 5555555555556666655.555555555555566666666666666665555555555555554444444 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.17
                 HHHHHHHHHHTT-HHHHHHS-HHHHHHHHHHHHHHHHH... CS
        TarH 131 glapliaaleagnleaffdlptqkiqplfealyaayeaLrk 171
                 +l ++++a +ag++ + f++++++++ l +   +a++++r+
  EHU02177.1 378 ALNAAVEAARAGEQGRGFAVVANEVRTLAQRSASAAKKIRT 418
                 79999*********************999999998888665 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHHHHTTTSSSSS..SHHHHHHHHH CS
        TarH  55 aearvsllqaRltLnragiaaladeaeda..kellaraees 93 
                  e++++  +++  +++++ a+ + +++ +  ++l+++a + 
  EHU02177.1 456 KEISMASEEQSRGIDQVNHAVTQMDEAAQqnAALVEQATAA 496
                 45554444444444444433332222222245555555443 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   1.0   1.7e-13   3.1e-10       1      53 []     212     264 ..     212     264 .. 0.97
   2 ?   -1.4   0.1       1.8   3.2e+03      19      28 ..     282     293 ..     266     317 .. 0.59
   3 ?    1.2   0.0      0.27   4.8e+02       3      22 ..     343     362 ..     342     375 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.7e-13
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 ll r +l PL++   + +++aaGdl+++lp sg++E+G+L  a+  M+++Lr+
  EHU02177.1 212 LLRRMLLTPLNKAIIHLEQVAAGDLSQPLPLSGNNELGRLNNALAGMQQALRD 264
                 689************************************************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
                 HHTTT..BTSST CS
        HAMP  19 riaaG..dldtr 28 
                 ++aaG  +l++r
  EHU02177.1 282 ELAAGnvHLSQR 293
                 455555555554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.27
                 HHTTHHHHHHHHHHHHHHTT CS
        HAMP   3 arrilrPLrrLaraarriaa 22 
                 +++++  +r+++++a+ri++
  EHU02177.1 343 VNYVMEKMREITESANRIGD 362
                 57888999**********84 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   2.7     1e-11   1.9e-08       2     161 ..       4     168 ..       3     186 .. 0.85
   2 ?   -0.7   0.9      0.49   8.8e+02     152     178 ..     304     330 ..     290     337 .. 0.71
   3 ?   -2.0   0.0       1.2   2.2e+03     126     163 ..     380     417 ..     378     433 .. 0.77
   4 ?    2.3   1.3     0.059   1.1e+02      79     151 ..     436     507 ..     411     513 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1e-11
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkd...kaekdellkdieeleaeidkllek 97 
                 l+ r+ L+ l +++ lll++v+v+G++ ++k n++l+ +   + + ++ l   +a+l++ ra+    + + +    +e ++++k+ +   ++ + +l++
  EHU02177.1   4 LSLRTGLLALLAFMTLLLLAVSVMGIVAINKGNRSLDVINRIQGIELNSLYRSNADLMRARASAALAVRKIEiglLDEGAQVTKTAQADVESSQRNLKR 102
                 677888999**************************************************9998877776666111566666666666666677777777 PP

   4HB_MCP_1  98 yekt.ilteeEkelleefkeqlnaY.revrkkvlelakegkkdeAyqlyetegrparekliealee 161
                 + +  ++t+e k +++++ ++ + Y ++++  ++++  ++ +de yql+e +++p  +k+++a+e+
  EHU02177.1 103 FVDAgTVTAEGKIMADAIASSYKDYlDQGILPMMKALDKQYNDEYYQLLEGKLEPLSAKYTKAVET 168
                 766524666778899*******************************************99999876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.49
   4HB_MCP_1 152 rekliealeelvdlnlkvAeeaykdnk 178
                  ++  e l + v ln+++A++a++ ++
  EHU02177.1 304 TAASMEQLTATVRLNASNAQQAHQLAN 330
                 345556677888888888888887665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.2
   4HB_MCP_1 126 kkvlelakegkkdeAyqlyetegrparekliealeelv 163
                 + ++e+a++g++ + ++++++e+r+ ++   +a++++ 
  EHU02177.1 380 NAAVEAARAGEQGRGFAVVANEVRTLAQRSASAAKKIR 417
                 56788899999999999999999877777777766664 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.059
   4HB_MCP_1  79 ellkdieeleaeidkllekyektilteeEke.lleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrpa 151
                 +  ++++++  e+   ++  +++++ +eE+   ++++++++++ +e+ ++  +l+++     A   +e+++++ 
  EHU02177.1 436 RAGETMDDIAGEVMRVTALMKEISMASEEQSrGIDQVNHAVTQMDEAAQQNAALVEQAT--AATHSLEAQSEQL 507
                 45567788888999999999999999999776899*******99999999988888765..5555555555555 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.7      0.16   2.9e+02      75     131 ..     288     346 ..     243     359 .. 0.39
   2 ?   -1.7   0.0       1.2   2.1e+03      40      75 ..     400     435 ..     394     467 .. 0.63
   3 ?   11.9   0.2   8.3e-05      0.15     149     176 ..     469     496 ..     468     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.-S--SS--- CS
        SKA1  75 enlpshlpkktaassaeeskssspeeeeeteskke.keeeaekakkpkk.reikevayi 131
                  +l ++ +++ a+ ++  ++ ++ + +++ +++++ ++++ ++a  +++ r  + v+y+
  EHU02177.1 288 VHLSQRTEESAASLEQTAASMEQLTATVRLNASNAqQAHQLANAVSDSAdRGAEVVNYV 346
                 33333322222222222222222222222222222211111111111112334444444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                 XXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXX CS
        SKA1  40 nklkkelqeeeeaikklkkeieaslkqqeklqhlke 75 
                 n++++  q+ ++a kk++ +i  s+++ ++ + +++
  EHU02177.1 400 NEVRTLAQRSASAAKKIRTLISDSQTRVKEGSEMAT 435
                 556666666666677777666666665555444444 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 8.3e-05
                 HHHHHHHHHHHHHHHHHHHHHTT--TTT CS
        SKA1 149 lekiNaaidelnkaveakykilaqpkkk 176
                 ++++N+a++++++a+++++++++q+   
  EHU02177.1 469 IDQVNHAVTQMDEAAQQNAALVEQATAA 496
                 59********************998744 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.6   8.3e+03      46      58 ..     151     163 ..     142     180 .. 0.53
   2 ?    6.6   0.2    0.0053       9.5      25      89 ..     248     313 ..     243     320 .. 0.89
   3 ?    3.8   0.1      0.04        72      20      78 ..     320     378 ..     311     385 .. 0.73
   4 ?    8.7   0.9    0.0012       2.2      37      83 ..     439     485 ..     409     495 .. 0.84
   5 ?   -1.8   0.0       2.3   4.1e+03      45      61 ..     492     508 ..     485     513 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.6
     BLOC1_2  46 lekkleklnekye 58 
                 le kle l++ky 
  EHU02177.1 151 LEGKLEPLSAKYT 163
                 3334444444443 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0053
     BLOC1_2  25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidq.iekqvteLeeavseLDeysk 89 
                 L +lN+a +   ++l+d+++++++   k+++ + el+    ++ q  e++ ++Le++++ +++ + 
  EHU02177.1 248 LGRLNNALAGMQQALRDSVNKVREAGLKIDSGSRELAAGNVHLSQrTEESAASLEQTAASMEQLTA 313
                 789999999999**********************9999888886538999************9986 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.04
     BLOC1_2  20 edyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLe 78 
                 ++ +  ++l +a+s   +  ++v++ + +k+ ++ e  + +   l+ id i  q++ L 
  EHU02177.1 320 SNAQQAHQLANAVSDSADRGAEVVNYVMEKMREITESANRIGDILSVIDGIAFQTNILA 378
                 55555667777777777888888999999999999999999999999998877766554 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0012
     BLOC1_2  37 kklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavse 83 
                 + ++d+a ++ +    ++e + + +++ + idq++  vt++ ea+++
  EHU02177.1 439 ETMDDIAGEVMRVTALMKEISMASEEQSRGIDQVNHAVTQMDEAAQQ 485
                 5677888888888888888888**********************997 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 2.3
     BLOC1_2  45 slekkleklnekyeelq 61 
                 ++++  + l++++e+lq
  EHU02177.1 492 QATAATHSLEAQSEQLQ 508
                 33344444444444444 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.8   4.9e+03      17      33 ..      89     105 ..      83     111 .. 0.76
   2 ?    8.9   0.0   0.00075       1.3      60      92 .]     182     216 ..     152     216 .. 0.63
   3 ?    4.1   0.5     0.024        43       9      40 ..     282     313 ..     277     320 .. 0.90
   4 ?   -1.8   0.0       1.7   3.1e+03       3      39 ..     325     361 ..     323     368 .. 0.62
   5 ?    4.1   1.1     0.024        44      12      67 ..     450     505 ..     439     516 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.8
       Sec20  17 lsqevqqSeenleelda 33 
                  +++v+ S+ nl+ ++ 
  EHU02177.1  89 AQADVESSQRNLKRFVD 105
                 57789999999998875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00075
       Sec20  60 kklerrdktdkllvf..lalglflacvvyvvkkRi 92 
                    +r++   k+l+   ++l+ +l++  +v+ +R+
  EHU02177.1 182 VEAQRNEIMMKVLIAvaVGLSVLLLVLAWVLLRRM 216
                 345777777787765115678899*********96 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.024
       Sec20   9 slraisqllsqevqqSeenleeldastkslek 40 
                 +l a++ +lsq +++S+  le+  as ++l++
  EHU02177.1 282 ELAAGNVHLSQRTEESAASLEQTAASMEQLTA 313
                 688999*****************999999986 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.7
       Sec20   3 akqiTeslraisqllsqevqqSeenleeldastksle 39 
                 a+q+ +++ ++    ++ v+   e + e+ +s++ + 
  EHU02177.1 325 AHQLANAVSDSADRGAEVVNYVMEKMREITESANRIG 361
                 5566666666666666666666666777777766664 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.024
       Sec20  12 aisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdk 67 
                 +  +l+++    See    +d+  + +++++e  +q + +++++     +le ++ 
  EHU02177.1 450 RVTALMKEISMASEEQSRGIDQVNHAVTQMDEAAQQNAALVEQATAATHSLEAQSE 505
                 55555555555555555555555555555555555555555554444444444433 PP

>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.9     0.002       3.5      25     105 ..     279     359 ..     232     363 .. 0.71
   2 ?    2.5   1.1      0.12   2.1e+02      76     107 ..     438     490 ..     377     510 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
  Adaptin_binding  25 qtaslsnrnasleteadeaqlekeeeeqdpsqpastepdksaaesesadaeflfggdeaarledlesllsklqqakdnvrn 105
                      ++++l   n +l ++++e +   e+++ +++q  +t   + + ++++ +  +   + ++   e ++++++k++++ ++++ 
       EHU02177.1 279 GSRELAAGNVHLSQRTEESAASLEQTAASMEQLTATVRLNASNAQQAHQLANAVSDSADRGAEVVNYVMEKMREITESANR 359
                      444445555555555555555555555555555555555555555555555577888889999**********99888765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
  Adaptin_binding  76 f.....................lfggdeaarledlesllsklqqakdnvrnlp 107
                      +                        +++   +++++  ++++ +a+++++ l 
       EHU02177.1 438 GetmddiagevmrvtalmkeisMASEEQSRGIDQVNHAVTQMDEAAQQNAALV 490
                      24445666666666666666655555666677788888888888887776654 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       1.3   2.4e+03     168     192 ..     151     175 ..     138     192 .. 0.44
   2 ?    4.9   0.3    0.0068        12     104     204 ..     258     357 ..     251     368 .. 0.85
   3 ?    9.7   1.4   0.00024      0.44     244     307 ..     446     509 ..     426     510 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
     Taxilin 168 aeaKlqqadallkeeqekkkrekey 192
                  e Kl+  +a+ +++ e   ++++ 
  EHU02177.1 151 LEGKLEPLSAKYTKAVETFGAKADE 175
                 3333333333333333333333332 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0068
     Taxilin 104 laekfqakLkdiqaqieekserneklreenaelteKlkslieqyelreehfekllktkelelqlaeaKlqqadallkeeqekkkrekeyllkeakeltk 202
                 +++ ++++++++++   + ++ + +l+  n  l+++ ++ ++  e+    +e+l+ t  l    a++ +q a+a ++    + ++  +y++++++e t+
  EHU02177.1 258 MQQALRDSVNKVREAGLKIDSGSRELAAGNVHLSQRTEESAASLEQTAASMEQLTATVRLNASNAQQAHQLANA-VSDSADRGAEVVNYVMEKMREITE 355
                 677788888888888888899999999**********************************9999999977777.666667777777888999998887 PP

     Taxilin 203 kv 204
                 + 
  EHU02177.1 356 SA 357
                 65 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00024
     Taxilin 244 kEmekmtkktkklEketnlwkskfektnkallemaeertekkkeieklkkkiqkLeklcraLqe 307
                  E+ ++t  +k++  ++++  +  +++n a+++m e  ++++  +e+ +  +++Le   ++Lq+
  EHU02177.1 446 GEVMRVTALMKEISMASEEQSRGIDQVNHAVTQMDEAAQQNAALVEQATAATHSLEAQSEQLQA 509
                 688899999*****************************************************96 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   0.00029      0.51      66     157 ..     271     371 ..     252     380 .. 0.84
   2 ?    0.3   0.1      0.39     7e+02     101     154 ..     406     459 ..     381     466 .. 0.65
   3 ?    0.0   1.6      0.47   8.4e+02      68     120 ..     459     499 ..     449     515 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00029
      CHDCT2  66 eqalvieeqlrraallnl...qeekekvgslaqrfaelellaeshqkllkesaagnknanavle......kvLnqleelLsdmkadvsrlpatlsrlrp 155
                 e  l i+   r  a  n+   q+++e++ sl+q+ a++e+l+++ +  ++++++  + anav        +v+n + e + ++ +  +r+  +ls +  
  EHU02177.1 271 EAGLKIDSGSRELAAGNVhlsQRTEESAASLEQTAASMEQLTATVRLNASNAQQAHQLANAVSDsadrgaEVVNYVMEKMREITESANRIGDILSVIDG 369
                 55666666666655555444699999********************9999999999999999988889989*******************999999988 PP

      CHDCT2 156 va 157
                 +a
  EHU02177.1 370 IA 371
                 87 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.39
      CHDCT2 101 ellaeshqkllkesaagnknanavlekvLnqleelLsdmkadvsrlpatlsrlr 154
                  + ++s +k ++   +++++  +  +++ ++  e ++d+ ++v r+ a ++ + 
  EHU02177.1 406 AQRSASAAKKIRTLISDSQTRVKEGSEMATRAGETMDDIAGEVMRVTALMKEIS 459
                 333333444444444455555555557777788889999999999999888775 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.47
      CHDCT2  68 alvieeqlrraallnlqeekekvgslaqrfaelellaeshqkllkesaagnkn 120
                 ++  eeq r  +++n              +++++  a++++ l+++++a  ++
  EHU02177.1 459 SMASEEQSRGIDQVNH------------AVTQMDEAAQQNAALVEQATAATHS 499
                 3444555555555544............4444444444444444444333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2156  (0.120252); expected 358.6 (0.02)
Passed bias filter:                      794  (0.0442858); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 3339.57
//
Query:       EHU02178.1  [L=307]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-44  151.2   0.0    3.1e-44  149.9   0.0    1.7  2  DDE_Tnp_1_5  Transposase DDE domain
    1.9e-24   86.5   1.0    2.3e-24   86.2   1.0    1.1  1  DDE_Tnp_1    Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   3.4e-48   3.1e-44       1     112 []      19     130 ..      19     130 .. 0.97
   2 ?   -2.6   0.0      0.78     7e+03      42      56 ..     263     279 ..     241     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.4e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHU02178.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHU02178.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.78
  DDE_Tnp_1_5  42 ltvkvlfk..lplRqlq 56 
                    +k+lf+  l+lR   
   EHU02178.1 263 YRIKQLFGgsLTLRDYD 279
                  45677774335666544 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   2.6e-28   2.3e-24       5     213 ..     116     293 ..     112     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 2.6e-28
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyi 103
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++  nv ds++++ l+++ ++ k +   aD++Y+++ ++d+l+ k+++ +
  EHU02178.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLSLNNVTDSEVFPGLIRQTHR-KIRAAAADGAYDTRLCHDELRRKNISAL 213
                 689*****************************************************************99.**************************** PP

   DDE_Tnp_1 104 irlkkntklyrkgaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeevaelyrlRwqiErvFkwlkrkfgldrlryrglnrve 202
                 i+++k + ++    e+  r+r   ++r    + + k+++                            y++R+  E+ + ++k+ + +++l +r+++  +
  EHU02178.1 214 IPPRKGAGYWPV--EYADRNRAVANQRLSGSNARWKWTTD---------------------------YNRRSIAETAMYRIKQ-LFGGSLTLRDYDVQV 282
                 **********55..44456666666666666666666666...........................****************.5559999****9999 PP

   DDE_Tnp_1 203 aqllllllaln 213
                 a++l++  aln
  EHU02178.1 283 AEALAMVRALN 293
                 99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2325.36
//
Query:       EHU02179.1  [L=122]
Description: secreted protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-15   57.3   7.0    2.7e-15   56.9   7.0    1.3  1  LprI           Lysozyme inhibitor LprI
  ------ inclusion threshold ------
      0.079   11.3   0.1      0.091   11.1   0.1    1.0  1  Peptidase_M49  Peptidase family M49


Domain annotation for each model (and alignments):
>> LprI  Lysozyme inhibitor LprI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   7.0     3e-19   2.7e-15       3     103 .]      32     122 .]      13     122 .] 0.87

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3e-19
                 XTTT-HHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT....HHHHHHHHHHHHHHHHHHHHHHHTTTS-TTSHHH....HHHHHHHHHHHHHHH CS
        LprI   3 dkaseaetqa..nqCasaalkaadaeLnkaykalkeekekkavssearkaLkdaqraWikyRdaeCalakspakegsgaggsmeplayasClarltqeR 99 
                 ++a+   t+   +qC + a +++dae+n++y+al+     k++s e r++L++aqraW++yR+a  a+ +s+ ++    +g+  p+a a+  ++l ++ 
  EHU02179.1  32 NQAD---TTLalMQCQDTATQQWDAEMNAQYSALM-----KKLSGEPREKLRIAQRAWLRYREAWLAVSRSQLNT----QGTFGPVALATQSTALVRNQ 118
                 4433...44459***********************.....99************************555555554....37888999999999999999 PP

                 HHHH CS
        LprI 100 iaeL 103
                 + +L
  EHU02179.1 119 TLQL 122
                 9887 PP

>> Peptidase_M49  Peptidase family M49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     1e-05     0.091     383     464 ..      19     100 ..       3     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1e-05
                    HHHHHHHHHHHHHHHHHHHHHGGGGB-TTT--BS-HHHHHHHHHHHHHHHSSSTTSEEEEE-TTS.S.-EEEEE-GGGTTTHH CS
  Peptidase_M49 383 keeaedviyvnylsmaragllalefydpeskkwgqaHmqArfailkvlleagekglvkleetkdedg.dltvkldrskietvg 464
                    ++++ d++ ++ l+ a + l+ +++ d+++++w  a m+A+++ l   l+ + ++ +++ + +  +  ++ + + rs+++t+g
     EHU02179.1  19 EQSTIDITLNQCLNQADTTLALMQCQDTATQQWD-AEMNAQYSALMKKLSGEPREKLRIAQRAWLRYrEAWLAVSRSQLNTQG 100
                    578889***************************5.99*****76555554666688888887655555889999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 913.07
//
Query:       EHU02180.1  [L=149]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-47  158.7  19.0    9.8e-47  158.5  19.0    1.0  1  DUF441    Protein of unknown function (DUF441)
  ------ inclusion threshold ------
       0.71   10.0   3.0        2.5    8.2   3.0    1.9  1  DUF962    Protein of unknown function (DUF962)


Domain annotation for each model (and alignments):
>> DUF441  Protein of unknown function (DUF441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5  19.0   1.1e-50   9.8e-47       1     138 [.       8     145 ..       8     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 1.1e-50
      DUF441   1 liLllllllgllaknksvviaalvllllkllklekllpllekkglelGviiltiavLvPiatgkislkellealkslkgliallvgilvavlsgkGvel 99 
                 liL++l++l+++ +n++v++++l+ll++k+++l++++p++ek+g+++G+iilt+av++P+a+g++ +++ll++++++++++a+lvgi+va+l+g+Gv++
  EHU02180.1   8 LILICLAVLSYFVHNTAVTLSILILLIIKMTPLSQFFPYVEKQGITVGIIILTVAVMAPLASGSLPASSLLKSFANWQSIVAILVGIFVAWLGGRGVSF 106
                 79************************************************************************************************* PP

      DUF441 100 lkeqpevvvalvlGtilgvvflkGvpvGPliaaGitall 138
                 ++ qp+v+ +l++Gt++gv+f++GvpvGPliaaGi++l+
  EHU02180.1 107 MSVQPSVIGGLLIGTVIGVAFFRGVPVGPLIAAGIVSLF 145
                 ************************************997 PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.0   0.00028       2.5      43      88 ..      40     129 ..       3     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00028
      DUF962  43 k..........................................lklllalfvvgyifafvGHf..vfEkrkPAlfknplqsllidplmvl 88 
                                                             +  +++ +vg ++a++G     f   +P+++  +l   +i++ ++ 
  EHU02180.1  40 LsqffpyvekqgitvgiiiltvavmaplasgslpassllksfaNWQSIVAILVGIFVAWLGGRgvSFMSVQPSVIGGLLIGTVIGVAFFR 129
                 25555555555555555555555555556677999999999988999999**********975115778899999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1140.12
//
Query:       EHU02181.1  [L=176]
Description: inorganic pyrophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-54  184.6   0.0    1.2e-54  184.5   0.0    1.0  1  Pyrophosphatase  Inorganic pyrophosphatase
  ------ inclusion threshold ------
      0.026   14.3   0.0      0.067   12.9   0.0    1.7  2  InPase           Inorganic Pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   0.0   1.3e-58   1.2e-54       1     158 [.      18     172 ..      18     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 1.3e-58
                      EEEEE-T.TCSEEEEEETTTTEEEEEEE-SSSB-BSSEEEEETT--BTCCBEETSSSEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEE CS
  Pyrophosphatase   1 vvvEipr.gsnaKyeidkeegklrldrvlftskgypanYGfipqTledtelkGDgDPlDvlvlgeeplspgevvevkvlGvlamiDegetDdKi 93 
                      v++Eip+  + +Kye+dk++g+l++dr++ t++ yp+nYG+i++Tl+      DgDP+Dvlv +  pl+pg+v++++++Gvl+m+De+++D+K+
       EHU02181.1  18 VIIEIPAnADPIKYEVDKDSGALFVDRFMSTAMFYPCNYGYINNTLSL-----DGDPVDVLVPTPYPLEPGSVIRCRPVGVLKMTDESGEDAKL 106
                      79*****8999*************************************.....***************************************** PP

                      EEEETT..SGGGTT-SSGGGSTHHHHHHHHHHHHHTTTTSCCT-SEEEEEEEEHHHHHHHHHHHHHH CS
  Pyrophosphatase  94 iavpvk..dprlkkindiedlpgllleeiehfFetykdlegkkknvkveewkdkeeAekvieeaher 158
                      +avp++  ++++++i+d++dlp+ll+++i hfFe+ykdle k+k+vkv++w ++e+A+++i ++ er
       EHU02181.1 107 VAVPHTklTKEYDHIKDVNDLPELLRAQITHFFEHYKDLE-KGKWVKVDGWDNAEAAKAEIVSSFER 172
                      *****9888889****************************.789*****************999887 PP

>> InPase  Inorganic Pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.5e-06     0.067      50      69 ..      55      74 ..      44      84 .. 0.90
   2 ?   -2.4   0.0      0.36   3.2e+03      98     117 ..     155     174 ..     151     176 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.5e-06
      InPase 50 hYGyikgtkgaDgdhvDvfl 69
                +YGyi+ t + Dgd vDv +
  EHU02181.1 55 NYGYINNTLSLDGDPVDVLV 74
                7*****************87 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.36
      InPase  98 gfkdeeeAraaYlenyekgw 117
                 g++++e+A+a   +++e+  
  EHU02181.1 155 GWDNAEAAKAEIVSSFERAA 174
                 78899999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1470.66
//
Query:       EHU02182.1  [L=117]
Description: AIG2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-22   79.2   0.3    4.2e-22   79.0   0.3    1.0  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.3   2.4e-26   4.2e-22       1     120 [.       3     109 ..       3     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 2.4e-26
                 EEESSTTSTTSCCCHHHHCSECEEEEEEEECCTBEEEE.ETTTEEEETTSSE.EEEEEEEE-HHHHHHHHHCT.TTTTSEEEEEEEEEC.TTS-EEEEE CS
       GGACT   1 vFvYGtLkrgepnhqrlllgarflesgpatlkgyrlydlggkypalvpgdgekVkGelyevddeelarLDelEpeepseYereevkvevledgeqveaw 99 
                 ++vYG+L+r++ n + +++  ++  +g+  ++gy+ly+l g+yp+++ g+g  V+ e+y++d + la+LD+l  ++++eY+r  ++ ++       +aw
  EHU02182.1   3 IIVYGSLRRKQGNSH-WMT--HAQWLGDHQIEGYELYSL-GHYPGVITGEGT-VYCEVYRIDASILAELDALR-TKGGEYKRHLIQTPF------GSAW 89 
                 57************9.884..566677778*******97.79******9999.********************.9********666666......47** PP

                 EEEETT..GGGCCS-S-SS-- CS
       GGACT 100 vYvyageeeegdrliesgdWr 120
                 +Yvy++ ++ g+++i+sgdW 
  EHU02182.1  90 LYVYQR-SVAGRQRIQSGDWL 109
                 ****76.9999999******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1115.16
//
Query:       EHU02183.1  [L=1255]
Description: uncharacterized DUF490 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-72  242.5  17.7      7e-66  223.0   2.0    6.4  7  TamB        TamB, inner membrane protein subunit of TAM compl
     0.0017   18.2   0.1        2.9    7.6   0.0    4.2  4  DUF2807     Putative auto-transporter adhesin, head GIN domai
  ------ inclusion threshold ------
      0.014   15.6  14.1        0.1   12.8   0.3    6.1  6  DUF748      Domain of Unknown Function (DUF748)
      0.045   13.8   0.3       0.15   12.1   0.1    1.9  2  Cadherin_3  Cadherin-like


Domain annotation for each model (and alignments):
>> TamB  TamB, inner membrane protein subunit of TAM complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.018        82      96     147 ..     192     256 ..     167     305 .. 0.61
   2 ?   -1.5   0.0      0.25   1.1e+03       7      36 ..     274     301 ..     267     335 .. 0.62
   3 ?    2.1   0.0      0.02        90       8      60 ..     424     475 ..     418     504 .. 0.78
   4 ?    1.9   0.1     0.024   1.1e+02      32      72 ..     539     580 ..     490     604 .. 0.70
   5 !    7.5   0.0   0.00046       2.1      29     186 ..     625     790 ..     603     809 .. 0.76
   6 !   10.8   0.2   4.5e-05       0.2      11      76 ..     816     889 ..     811     909 .. 0.82
   7 !  223.0   2.0   1.6e-69     7e-66       8     383 .]     920    1255 .]     913    1255 .] 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.018
        TamB  96 fvnpe..eteekeas.....agtaeksaeptgldlelalfvdlklelgpdvrvdgeg......le 147
                 +v+p+  ++++ e++     ++   k+  pt +d++l l++d++  +g+++r+ g++      l+
  EHU02183.1 192 VVDPKvqQPQPNEKPlgetlQAMFAKPLLPTLPDFQLPLDIDVQDIVGEQLRITGDTdivvnqLR 256
                 34444332222222245566777889999999999999999999999999999555443333333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.25
        TamB   7 dangGtltlnGsisleslkdieldLtlslk 36 
                 d+n G+l  +G+++l+  +++++d  l+++
  EHU02183.1 274 DSNLGRLNGSGQATLA--DNWPVDFALNGD 301
                 4667777777777776..444444444432 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.02
        TamB   8 angGtltlnGsisleslkdieldLtlslknllvlntkdadgtvsgdltlkgsl 60 
                 a +Gt+ l++ +++ +  +++ +Ltl++ n   + ++   ++++g++t +gsl
  EHU02183.1 424 ALQGTIDLTALVDWSKAISWRSELTLAGINTARQYPDW-PARLEGKITTRGSL 475
                 679************99999999999987765555544.68888888888876 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.024
        TamB  32 tlslknllvlntkdad..........gtvsgdltlkgsldqpvlsgeltis 72 
                 +++ +                     g v gd++ +gsl++p+l ++lt +
  EHU02183.1 539 DANVDA---------PhldnalpglgGVVKGDIKARGSLKAPQLLADLTAT 580
                 222222.........23334555554668***************9999865 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.00046
        TamB  29 ldLtlslknllvlntkdadgt.vsgdltlkgsldqpvlsgeltissatitlyeapaseaaserskdvvfvnpe...........eteekeasagtaeks 115
                 l+L++++++ + + +  ++g  vsg+l l+gs d+ + + +  +++ ++++++ +   + ++    +  vn++           +++++     +++  
  EHU02183.1 625 LTLNADGDEKQHQLKLNVQGEpVSGQLALNGSFDRQTETWKGSLNNTRFNTPVGEWRLTRAM---AIDYVNQKqtasigphcwqNPNAQLC--VPEPIE 718
                 5666666666666666677**99********************************9999999...45555555447888887654444444..566777 PP

        TamB 116 aeptgldlelalfvdlklelgpdvrvdgegleaeleGdLtvngtangrlslfGsirltrGtynl....fgkeFel 186
                 a p+g +  +      +l++ +++  d+  l++ ++Gd +vn ta+g+l ++G++ l + +++      g+++ +
  EHU02183.1 719 AGPSGHAHVV--LNRFDLAMLKPFLTDQTQLSGVFSGDARVNWTADGKL-PVGTLALKSNNVKVaqdvQGNTLPI 790
                 7788866666..55556666669999*********************99.*****99988877766633666555 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 4.5e-05
        TamB  11 GtltlnGsisl.eslkdieldLtlslkn..llvlntkdad.....gtvsgdltlkgsldqpvlsgeltissati 76 
                 + ++l+G++++ + ++  el  +++++n  l ++n+  ++     g +++dl+l g+ +qp+l g+l +   ++
  EHU02183.1 816 NNGQLDGNVQItDPQQRRELGGNVNIRNisLAMINPALMQgesikGLLNSDLRLGGTVQQPQLFGQLGLKDVNV 889
                 567899****965567777*********88999999999999966666999*************9998876665 PP

  == domain 7  score: 223.0 bits;  conditional E-value: 1.6e-69
        TamB    8 angGtltlnGsisleslkdieldLtlslknllvlntkdadgtvsgdltlkgsldqpvlsgeltissatitlyeapaseaaserskdvvfvnpeetee 104 
                  + +G + l+G++++  l++++ ++ +++++++v  +++++++vs+d++++ ++ +++l+g ++i++a+it+ e+p+s + ++ s d v ++++    
  EHU02183.1  920 TAQGNINLSGDADWSQLDNWRARVAAKGSRVRVTVPPMVRMDVSPDVVFEATPAAFNLDGRVDIPWAHITVQEVPESAVGVS-S-DEVMLDKN---- 1010
                  4789************************************************************************998877.4.89999988.... PP

        TamB  105 keasagtaeksaeptgldlelalfvdlklelgpdvrvdgegleaeleGdLtvngtangrlslfGsirltrGtynlfgkeFelegGeitfagdppldp 201 
                           k+ +p++    + ++ +l +++g+dvr++  gl+a+l+GdL++  + +g l l+G+i++ +G+++++g+++ +++Ge++fag p  +p
  EHU02183.1 1011 --------LKPIAPKT--ASIPINSNLTIHVGNDVRLSAFGLKARLNGDLKMVQDKSG-LGLNGQINIPSGRFHAYGQDLIVRKGELQFAGPPD-QP 1095
                  ........23445666..56666********************************788.********************************666.** PP

        TamB  202 tLditaiyrvnasssqtnerdpvrvllnvtGtlskPqvslssePnlsekeilslLllgrslsdlssgqlgaaaasllgsaglsllsgqlnklssalg 298 
                  +L+++ai++  a      ++d v+++l+vtG +++P+v+ +s+P++s++e+ls+Ll g++l++ +    + a++s+l ++g+ + +++++k++ ++g
  EHU02183.1 1096 YLNLEAIRNPDA------TEDGVTAGLRVTGLADEPKVEVFSDPAMSQQEALSYLLRGQGLNSDG---DSNALTSALVGLGVAQSGQVVGKIGETFG 1183
                  **********43......3355*************************************996666...6777777777888999899999******* PP

        TamB  299 ldnlsldsatsstggdaqdrtglvvevgkylndrlyvsvgsavglggssegdvsieyrltpnlslraklfngnngqvdLsykkrF 383 
                  ++nl ld+ +         ++  +v+v+ y  + l+v++g  vg+++s   + +++yrl+p+l+l+a +  g ++ +dL y+++F
  EHU02183.1 1184 VSNLALDTTGV--------GDSQQVQVSGYVLPGLQVKYG--VGIFDSLA-TLTLRYRLMPKLYLEAVS--GVDQALDLLYQFEF 1255
                  ******99884........36679****************..******98.******************..62355********9 PP

>> DUF2807  Putative auto-transporter adhesin, head GIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.012        53      69     114 ..     241     318 ..     225     349 .. 0.58
   2 ?   -3.0   0.0       1.2   5.3e+03     147     157 ..     402     412 ..     351     426 .. 0.61
   3 ?    1.1   0.0     0.065   2.9e+02      61     128 ..     593     661 ..     562     674 .. 0.68
   4 !    7.6   0.0   0.00065       2.9      96     154 ..     890     948 ..     864     964 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
                 EEEEECCEEEEE-S...............................-EEEEEEEEEEECSEEEEEE.EEEEEEEEEEEC CS
     DUF2807  69 elelsgsgsieveg...............................tlkadklelniagsgditlk.ldaeelsveasg 114
                 +l+++g ++i+v++                               +  ad+  ++ a +gd++++ ++ e+ls++++g
  EHU02183.1 241 QLRITGDTDIVVNQlrvkaktldrhiqlqtldvdsnlgrlngsgqATLADNWPVDFALNGDVNVDpVKGEKLSLTLQG 318
                 455555555555553333333333222222222222222222332233445666667777777777777777776665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 EEEEEECCEEE CS
     DUF2807 147 vevevaGsgda 157
                 +++++ G+g++
  EHU02183.1 402 ATITLDGKGNI 412
                 23333333333 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.065
                 EEEES--SEEEEECCEEEEE-S-EEEEEEEEEE........ECSEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEE CS
     DUF2807  61 tvtvpnleelelsgsgsievegtlkadklelni........agsgditlkldaeelsveasgsgdielsGtadrle 128
                 t ++   ++ +++g+ +++ve+ lk+d+l++n+        +++ +++l+++ e +      sg++ l+G+ dr++
  EHU02183.1 593 TLKSDVRSSDQIAGKLQLRVEQ-LKQDALNINLltlnadgdEKQHQLKLNVQGEPV------SGQLALNGSFDRQT 661
                 4455555555788999999999.******999977744444444444444444444......45555555555554 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00065
                 SEEEEEE.EEEEEEEEEEECCEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEECC CS
     DUF2807  96 sgditlk.ldaeelsveasgsgdielsGtadrlevsvaGsGeleardlkasevevevaGs 154
                 +g++    l++++l++  +g ++ +l+G  ++++ +++ sG+++ ++l+   + v+++Gs
  EHU02183.1 890 KGNFMPVdLTSASLNMVFNGMSS-TLNGLLQTAQGNINLSGDADWSQLDNWRARVAAKGS 948
                 56666666999999999999999.9********************************997 PP

>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.56   2.5e+03       3      29 ..     132     159 ..     130     181 .. 0.64
   2 ?    5.5   0.1     0.004        18      89     151 ..     211     272 ..     209     273 .. 0.79
   3 ?   -0.0   0.0       0.2     9e+02      29      81 ..     371     424 ..     363     441 .. 0.58
   4 ?   -1.5   0.1      0.56   2.5e+03      48      67 ..     634     656 ..     596     672 .. 0.50
   5 ?   -0.4   0.0      0.26   1.2e+03      78     119 ..     726     764 ..     718     789 .. 0.69
   6 ?   12.8   0.3   2.3e-05       0.1      61     137 ..     817     891 ..     767     904 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.56
      DUF748   3 vsidrlaltdgsvafaDrslsp.pfklt 29 
                 +s+ ++ l++ sv+++D ++s   f++ 
  EHU02183.1 132 ISLRHVGLHNISVKVDDTAISLvDFSTG 159
                 6777777777777777777766555533 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.004
      DUF748  89 lspYlakylglelesGkLsldlryklakgdklkltaegnlgleqLelgdrvdsedllrwesLp 151
                 l++ +ak l  +l + +L ld++++ + g++l++t++ +++++qL+++ +  +++++ ++ L+
  EHU02183.1 211 LQAMFAKPLLPTLPDFQLPLDIDVQDIVGEQLRITGDTDIVVNQLRVKAKTLDRHIQ-LQTLD 272
                 56666777777788788888888887777999*****************99888876.56665 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.2
      DUF748  29 tlselnltlsnlsslpeqpadvelsgavnkggplqisGtlnplplase.lelsl 81 
                 + ++l+ + ++ +++     + +++g+   +++++++G+ n+++ +++ l++++
  EHU02183.1 371 QADNLDYQFKGKATDYVMSLRTAVKGEAVPPATITLDGKGNIEQFSLDkLRVAA 424
                 444444444444444433344555666666688888888888887777766654 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.56
      DUF748  48 advelsgavnkg...gplqisGt 67 
                  + +l+ +v++    g+l+++G+
  EHU02183.1 634 KQHQLKLNVQGEpvsGQLALNGS 656
                 22222222222222233333333 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.26
      DUF748  78 elslkgldLaplspYlakylglelesGkLsldlrykl.akgdk 119
                  + l+++dLa l p+l +++     sG +s d r+++ a+ +k
  EHU02183.1 726 HVVLNRFDLAMLKPFLTDQTQ---LSGVFSGDARVNWtAD-GK 764
                 577889999999999999988...5688888888887533.22 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 2.3e-05
      DUF748  61 plqisGtlnplplase....lelslkgldLaplspYlakylglelesGkLsldlryklakgdklkltaegnlgleqLelgd 137
                 + q++G++++++++++    +++++++++La ++p l +       +G L+ dlr+   ++++++l   g+lgl++++++ 
  EHU02183.1 817 NGQLDGNVQITDPQQRrelgGNVNIRNISLAMINPALMQGES---IKGLLNSDLRLG-GTVQQPQLF--GQLGLKDVNVKG 891
                 33677888866655555789****************977655...45**********.777777776..*******99976 PP

>> Cadherin_3  Cadherin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.3e-05      0.15      25      77 ..     608     661 ..     590     667 .. 0.82
   2 ?   -3.7   0.0       2.7   1.2e+04      11      44 ..    1011    1044 ..    1003    1045 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
  Cadherin_3  25 tglrvlegsskvittenLs.aeDeDtppeeltytvvrgpsnGrlelkgapgekv 77 
                  +lrv + ++  ++ + L+   D D+++++l+++v  +p  G+l+l+g+  +++
  EHU02183.1 608 LQLRVEQLKQDALNINLLTlNADGDEKQHQLKLNVQGEPVSGQLALNGSFDRQT 661
                 4688888889999988888557**************************966555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.7
  Cadherin_3   11 ikpvndeaPvlttntglrvlegsskvittenLsa 44  
                   kp+  ++  + +n++l++  g+ + +++  L+a
  EHU02183.1 1011 LKPIAPKTASIPINSNLTIHVGNDVRLSAFGLKA 1044
                  5666777778889999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.37
# Mc/sec: 10113.43
//
Query:       EHU02184.1  [L=579]
Description: putative outer membrane protein/surface antigen [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-36  124.0   3.4    1.4e-35  123.3   3.4    1.3  1  Bac_surface_Ag  Surface antigen
    8.6e-20   70.6   0.0    1.8e-19   69.6   0.0    1.6  1  POTRA_TamA_1    POTRA domain TamA domain 1
    1.9e-14   54.0   0.1    5.8e-08   33.2   0.0    3.4  3  POTRA           Surface antigen variable number repeat


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   3.4   2.4e-39   1.4e-35      21     321 ..     283     576 ..     268     578 .. 0.80

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 2.4e-39
                     EEEEEEEESTSSTTS-EEEEEEEEEE........GGGTBS.S-EEEEEEEEEEEEEE.ES..SSEEEEEEEEEEEEEEES---BHHHHHHHHSCS CS
  Bac_surface_Ag  21 slnlsftePyflgdrvslglslfare........sdsdesdsyrtksvgfsvslgrp.lt..enyslslglsvqknkilkdsssennrnvssask 104
                     +l+ ++ +P++ +++ s+  s++ +         ++    +s  +++++fs +l r  l+  + ++ +l +s + ++ +  ++  n r       
      EHU02184.1 283 RLKGTWRKPWVNDRGHSMMASAYISApeqqvdlsYKVPLLKSPLEQYYTFSGGLKRTdLNdtKADTSTLAVSRNWDSSSGWQRAVNLRWSLDHFT 377
                     56667899999999999999999998999999988888899999999999999999874422555555555555555555555444443322355 PP

                     --EEEEEEEEEEEEEEEE.EESS.SSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEEEEEEESSSS-.--GGG- CS
  Bac_surface_Ag 105 lqtgksltsslslslsyd.trdd.alfPtrGvllklrleftgpllggdvsylkldakasyyvpltkekdlvlaarvalgyisgygtkdelpfyer 197
                     +++ +++t+ l  ++s + tr++ +l+Pt G  ++ +++++    g+dv +l l+a+  +  +l++  +  + ar+++g+i+ +  ++ +p++ r
      EHU02184.1 378 QGNVTNTTMLLYPGVSLNrTRSRgGLMPTWGDSQRYSVDVSDTTWGSDVDFLILQAQNVWIRTLGE--KNRFIARGTVGWIETNDFDK-VPPDLR 469
                     55666666666667765524444156***************************************5..566679********989988.****** PP

                     B-BSSTTSSTEE-TT-BS-EEEEEEE--BSEEEEEEEEEEEE-SSS-GGTTEEEEEEEEEEEEE-TT--TTTTTTS--TTTS-EEEEEEEEEEEE CS
  Bac_surface_Ag 198 FyaGGsnsvRGfesgglgprdesgdalGGdsyavaslElrfplpflkkqnsvrlalFfDaGnvwdkegqspsssrsasstaeirasvGvgLrwqs 292
                     F+aGG  s+RG+++ ++ prd +g+  G++++a++slE+++ +     + ++++a+F+DaG  ++  +qs+           i++++G+g+rw+s
      EHU02184.1 470 FFAGGDRSIRGYKYKNVSPRDSDGKLTGASKMATGSLEYQYNV-----SGKWWGAVFVDAGEAVNDISQSD-----------IKTGAGIGVRWAS 548
                     *******************************************.....556***********988544444...........699********** PP

                     TTEEEEEEEEEEEE-STT--EE.SEEEEEC CS
  Bac_surface_Ag 293 PlGPlrfdyAiplkkedgdktq.rFqFgiG 321
                     P+GP++fd+A p+ ++++  +  +F+ g+G
      EHU02184.1 549 PVGPIKFDIARPIGDREE--HGlQFYVGLG 576
                     ***********9988877..3347777776 PP

>> POTRA_TamA_1  POTRA domain TamA domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0     3e-23   1.8e-19       2      77 .]      26     101 ..      25     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 3e-23
  POTRA_TamA_1   2 veieGldgeleeNvrayLsliseeesesserlerllrraeeeirkALralGYYqptiefsleddk...dcwkltltVtp 77 
                   +++eGl gel++Nvra+Ls+is +e ++++   r++ r+ ++i+++LralGYY+p i+f+ ++ +   +++ l+++Vtp
    EHU02184.1  26 LQLEGLTGELQKNVRARLSTISSDEVTNDS---RFRARVSAAIKEGLRALGYYEPDIDFESRPAPaqgGRPVLIARVTP 101
                   799***************************...****************************998889999*******98 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00081       4.8      20      74 ..      40      96 ..      26     102 .. 0.69
   2 !    9.0   0.0   0.00035       2.1       6      57 ..     112     165 ..     106     176 .. 0.81
   3 !   33.2   0.0   9.8e-12   5.8e-08       1      62 [.     191     248 ..     191     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00081
                HTTTS.SSTTSBHCHHHHHHHHH.HHHHHHHCTT-EE.EEEEEE...HSSTTSEEEEEEE CS
       POTRA 20 rrele.lkegdvynpekleadke.alksryanlGyfdasVqvel...peddedknrvdlt 74
                r++l+ +   +v n ++++a ++ a+k+ +++lGy++++++ e    p++ + +    l+
  EHU02184.1 40 RARLStISSDEVTNDSRFRARVSaAIKEGLRALGYYEPDIDFESrpaPAQGGRPV---LI 96
                444443677788888888776662579*************887765656555555...55 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00035
                 EEEES.SSS-HHHHHTTTSS...STTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE CS
       POTRA   6 infeGnkktkdeelrrelel...kegdvynpekleadkealksryanlGyfdasV 57 
                 i ++G  +  d + ++ +     k g ++n  ++++ k+  +++ +++Gyfd + 
  EHU02184.1 112 IIVTGQ-AKNDADYKNWIAQgrpKVGTILNHGQYDKFKSGFTNLALRNGYFDGEF 165
                 667776.7777777777744444999*************************9765 PP

  == domain 3  score: 33.2 bits;  conditional E-value: 9.8e-12
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEE..H CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvel..p 62 
                 +++++++f+G  +++d +l++++++k+gd+y++ +l +  +    r+ ++G+f  sV+v +  +
  EHU02184.1 191 YRFGDVTFQGS-QIRDAYLQNLVPFKKGDYYSSRDLAELNR----RLSATGWFQ-SVVVAPefK 248
                 799*******9.*****************************....*********.997766331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4153.12
//
Query:       EHU02185.1  [L=439]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-39  133.5   5.8    1.1e-38  132.6   5.8    1.3  1  DUF21      Cyclin M transmembrane N-terminal domain
    5.7e-22   77.5   0.1    1.4e-21   76.3   0.1    1.7  1  CorC_HlyC  Transporter associated domain
    0.00017   21.9   1.6      0.003   18.0   0.1    3.1  3  CBS        CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   5.8   1.9e-42   1.1e-38       1     176 []       6     197 ..       6     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.9e-42
       DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae...........galavvi 88 
                 l+i+ll+++saffs +E++l ++++++l+ la++g+ +a+r+lk+ + p  + ++++ig + v il +++++a+f+  +++           ++l++++
  EHU02185.1   6 LVILLLIVISAFFSLSEISLAAARKIKLKLLADEGNVNAQRVLKMQETPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFSAlfnrfmshelaEQLSFIC 104
                 5789999************************************************************************99****************** PP

       DUF21  89 atvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.....esesepavseeelkklveeseeegvieeee 176
                 +++ivt l+++f++++Pk++++  +e+ial+++ p+r+++ +++Plvwl++ l+n++         +++ ++++++ ++ve+++ +gv+ ++e
  EHU02185.1 105 SFTIVTSLFILFADLTPKRVGMIAPETIALRIINPMRFCLLIMRPLVWLFNGLANVFFrvfklPMVRKDDITSDDIYAVVEAGALAGVLRKQE 197
                 ***************************************************************999**********************99887 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.1   2.4e-25   1.4e-21       2      80 ..     347     425 ..     346     426 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 2.4e-25
                 EECTTEEEEETT-BHHHHHHHHTS.TTHH.CT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelgl.elpe.edyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvekl 80 
                  +de+s+lv+G +p+d++ + l++ ++p+ ++yeT+gG+++  l +iPk+ +   v++ g++f+V+++d  rI+++ v+++
  EHU02185.1 347 ARDENSWLVEGGTPIDDVMRVLDIdDFPQsGNYETIGGFMMYMLRKIPKRTD--FVKFAGYKFEVVDIDSYRIDQLLVTRI 425
                 589*********************88***88*********************..55555*******************985 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.76   4.5e+03      34      46 ..     182     193 ..     163     195 .. 0.66
   2 ?    1.3   0.0     0.078   4.7e+02      24      55 ..     237     269 ..     216     271 .. 0.74
   3 !   18.0   0.1   4.9e-07     0.003      10      56 ..     287     333 ..     280     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.76
                 EEEETTTBEEEEE CS
         CBS  34 PVVdedgklvGiv 46 
                  VV e g l G++
  EHU02185.1 182 AVV-EAGALAGVL 193
                 489.899999987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.078
                 HHHHHTSSEEEEE..ETTTBEEEEEEHHHHHHHH CS
         CBS  24 lmrekgvsrlPVV..dedgklvGivtlrDllral 55 
                 +++e+ +s ++V   d d ++vG+v  + ll  +
  EHU02185.1 237 KIAEHPHSKFLVCngDID-HIVGYVDSKELLLRV 269
                 465666888977765544.5*****999999765 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 4.9e-07
                 EEEETTSBHHHHHHHHHHHT..SSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS  10 vtvppdttleealelmrekg..vsrlPVVdedgklvGivtlrDllrall 56 
                 + vp + tl+eale ++ +g  + ++ +++e+  +vGi+tl D++  l+
  EHU02185.1 287 LIVPDTLTLSEALESFKTAGddF-AV-IMNEYALVVGIITLNDVMTTLM 333
                 67899999********5555444.55.66****666********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3288.99
//
Query:       EHU02186.1  [L=68]
Description: uncharacterized DUF1107 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-31  105.6   0.5    9.6e-31  105.5   0.5    1.0  1  DUF1107   Protein of unknown function (DUF1107)


Domain annotation for each model (and alignments):
>> DUF1107  Protein of unknown function (DUF1107)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.5   5.3e-35   9.6e-31       1      63 []       1      63 [.       1      63 [. 0.98

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 5.3e-35
     DUF1107  1 mRiFkkYaPkqiAkyvktffkGrlyikglGrfeFdkGkvllpkkadkkhlkvvseiNeeikrl 63
                m+iF++Y+P+qiAkyvkt+fkGrlyik++G+feFdkGkvl+p+ +dk+hl+v+seiN+++ rl
  EHU02186.1  1 MKIFQRYNPLQIAKYVKTLFKGRLYIKDVGAFEFDKGKVLIPRVKDKQHLSVMSEINRQVVRL 63
                9**********************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 547.66
//
Query:       EHU02187.1  [L=187]
Description: putative transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-75  252.4   2.8    1.5e-75  252.2   2.8    1.0  1  YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI00
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.032   13.9   0.1    1.7  1  Redoxin      Redoxin


Domain annotation for each model (and alignments):
>> YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI0045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.2   2.8   1.7e-79   1.5e-75       2     159 ..      25     182 ..      24     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.2 bits;  conditional E-value: 1.7e-79
  YtfJ_HI0045   2 elgqkvpsvevadkgelvlkedkvsykaWnssqlaGkvrviqhiaGrssakelnaalieaikaakfdrdkyqtttiinaddaivgtgvfvkssledsk 99 
                  e+g++vp+v+v+dkgel+l+++k+sy++Wns+ql+GkvrviqhiaGrssake+naal+eaik+ak+++d+yqttti+n+ddai gt+ fv+ss++++k
   EHU02187.1  25 ETGKRVPPVGVNDKGELILAQEKFSYQDWNSAQLNGKVRVIQHIAGRSSAKEMNAALVEAIKSAKLSHDRYQTTTIVNTDDAIPGTSLFVRSSIQSNK 122
                  6899********************************************************************************************** PP

  YtfJ_HI0045 100 kefpwsqlvlDekgvvkkaWdLkeessaiivldkeGkvkfvkeGaLsekevkqvielikk 159
                  k++pwsq+++D+kg+v++aW+L++  sai+vldk+G+vk+vk+GaL+++evk+vi+l+k+
   EHU02187.1 123 KQYPWSQFIVDSKGNVQHAWQLQQGGSAIVVLDKNGQVKYVKDGALTQQEVKEVITLLKT 182
                  *********************************************************986 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   3.6e-06     0.032      56     143 ..      89     176 ..      51     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.6e-06
                 HHHHCSTTTEEEEEESSSHH.....HHHHHHHTT-TSE...EEE-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHTSTTSH CS
     Redoxin  56 ellkekgvdvvavvadndaf.....vkefwgkeglkfp...vlsDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepeteesna 143
                 +l +++  +  +v++d+  +     v++ + ++++++p   +++D +++++ a+ l+  +      +  + +v+d++g+v+y++ ++ +++e++++
  EHU02187.1  89 KLSHDRYQTTTIVNTDDAIPgtslfVRSSIQSNKKQYPwsqFIVDSKGNVQHAWQLQ--Q------GGSAIVVLDKNGQVKYVKDGALTQQEVKEV 176
                 444555556667777777778777788888886667764446*************77..3......67899**************99985555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1635.10
//
Query:       EHU02188.1  [L=247]
Description: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-47  162.6   0.1    1.6e-47  162.3   0.1    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.1   9.1e-52   1.6e-47       9     249 ..       5     234 ..       1     241 [. 0.83

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 9.1e-52
                 HHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT-SG-E CS
  Inositol_P   9 avelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgipqva 107
                   +la++ag +++++++  ++ ++ +  + +  +vtaad a++++i++ l++  p+ ++l+ee+    e  + ++ ++ w+vDP+DGTk+F+++   ++
  EHU02188.1   5 ISQLAREAGDAIMQVYN-GSVPADVSH-KADDSPVTAADLAAHDVIVKGLKQLTPDIPVLSEEDPPGWE--VRQHWQRYWLVDPLDGTKEFIKRNGEFT 99 
                 56899***********8.666666666.45777********************************9999..666667********************** PP

                 EEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETC...EEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHHH CS
  Inositol_P 108 VsigllvegkpvlGviaqPllgqlysaakgkGaflng...eklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaav 203
                 V i+l+++gkp++Gv+++P+lg +ysaa+gk    +g   +++++ +a   +  ++v+       +++++ ++++ +++ +  ++ ++ gs  lk ++v
  EHU02188.1 100 VNIALIEQGKPIIGVVYAPALGVMYSAAEGKAWKEEGgekQQIHVLDAR--PPLVVVS-------RSHNDDDEMKEYLKQLGEHQTVATGS-SLKFCLV 188
                 ****************************877554444866666666666..3333322.......33333345566777777775666655.5****** PP

                 HHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSCSSSTTSS CS
  Inositol_P 204 aeGkadaylefgrekkWDhAAGeaileeaGGvvtdakgegrlllar 249
                 aeGka+ y +fg +++WD+ AG+a+  +aG+ v d++g+ ++++ r
  EHU02188.1 189 AEGKAQLYPRFGPTNIWDTGAGHAVAVAAGAHVHDWQGRTLDYAPR 234
                 ***************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2112.51
//
Query:       EHU02189.1  [L=646]
Description: 2':3'-cyclic-nucleotide 2'-phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-20   73.8   0.0    3.5e-20   72.8   0.0    1.5  1  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    1.5e-10   41.9   0.0    2.9e-10   41.0   0.0    1.5  1  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   3.9e-24   3.5e-20       2     151 ..     356     549 ..     355     560 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 3.9e-24
                    EEEESSB....---HHTS--HHHHHHHHHHTGSTT-............-EEEEEGGG-...---B......TTTEEEHHHHHHHS-S--EEEEEEE CS
  5_nucleotid_C   2 igtttveldgrdlalrtgetnlgnliadalraaaga............dialangggi...radl......paGditvkdlltvlpfgntlvvvel 76 
                    ig++++ +++  l+l  ++ ++ ++++ a+ra+++              +++a++++     +d       ++G++t +++++++ + ntlvv+++
     EHU02189.1 356 IGKSADVMYSY-LSL-VQDDPTVQIVNNAQRAYVEHfiqgdpdlahlpVLSAAAPFKAggrKNDPasyvevEKGNLTFRNAADLYLYPNTLVVMKV 449
                    77777766664.566.99999*********999999888888776666344444443333233223456779************************ PP

                    EHHHHHHHHHH......HTTTTTS--TT-E............EEE.SEEEEE-TTS-T............T--EEEESSS-BEEE--TTSEEEEEE CS
  5_nucleotid_C  77 tGaqlkeaLen.....esvsaskaasgrfl............qvs.Glrytydlskpa............gervtslsvtvngkpldddktYkvat 142
                    +G+q+k++Le      +++  ++ ++                +v  G++y++d+++pa             +r+++l++  +gkp+d ++t+ vat
     EHU02189.1 450 SGEQVKDWLECsagqfNQIDPTSRRT---QplinwnfrtynfDVIdGVSYQIDVTQPArydeecnlihpdASRIKDLRW--QGKPIDLKATFLVAT 540
                    **********9877653222222222...134688889999999989******************************99..*************** PP

                    EHHHHTTGG CS
  5_nucleotid_C 143 nsylasggd 151
                    n+y+a  g 
     EHU02189.1 541 NNYRAYAGK 549
                    ****97775 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   3.2e-14   2.9e-10       1     202 [.      24     259 ..      24     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.2e-14
                  EEEEEEESBTB...........TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEE..........EEEC-TTSC CS
  Metallophos   1 lrilvigDlHl...........algggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipv..........ylllGNHeg 76 
                  lr+l ++DlH              + ++l +++ l++ +++e  + +++ +GDl+++++l  +++   l++     +pv          + +lGNHe 
   EHU02189.1  24 LRVLETTDLHSnmmdfdyykdtPTEKYGLVRTASLIHAARQEVTNSVLVDNGDLIQGSPLGDYMAAKgLKQGEV--HPVykamntldysAGTLGNHE- 118
                  68999*****99999999988877778888888999999999999999999*******7777555553333333..34444444455578999****. PP

                  HHHHHHHHHHHHHHH..HHHHEHHHCEEETSEEEE..EETTE......EEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC.....HHHHHHHHHHT CS
  Metallophos  77 feeellnkygylgif..sepwrsdaevfnnlplas..lgsgs......lkvlllhGgspel.lvsldklgslnleleapepg.....dewlkdlekre 158
                  f ++l+ +++ l+    + ++ +  + +++ pl+   l++ +       ++++++ g++++   +++ +++ nl+  +  ++            ++ +
   EHU02189.1 119 FNYGLPYLQKALAGAhfPYVNANVIDLKSGKPLFTpyLIKPTtvtdrdGNTQTVNIGYIGFvPPQIMVWDKGNLQGKVRVDDitetaRRYVP-EMRAK 215
                  77766666666665511444444466666666666553333233344545555555555558445555555555555554334334444444.5999* PP

                  TCSEEEEEESSESSCSSSCSCCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 159 kadwvivlgHsplyrgsgylfgdealedllkkygvdlvisGHtH 202
                  +ad+v+vl+Hs+l++  ++ ++++++  l + +g+ ++ +GH H
   EHU02189.1 216 GADVVVVLAHSGLSSEPYQAMAENSVYYLSEVPGISAIMFGHAH 259
                  **************99999***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 5252.80
//
Query:       EHU02190.1  [L=206]
Description: FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-27   93.2   0.0    1.8e-26   92.3   0.0    1.5  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    6.1e-19   68.8   0.0    7.7e-19   68.5   0.0    1.1  1  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0     2e-30   1.8e-26       3      94 .]     116     203 ..     114     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 2e-30
                 CBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   3 eeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 + + ++d+V+vhy+gkl dg+vfdss+ r++p+ef v    vi G+ eal+ m vG k++l ip +laYge+g+ g+ ipp +tL+FeveLl
  EHU02190.1 116 I-PSRQDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVT--GVIAGWIEALTLMPVGSKWELVIPHNLAYGERGA-GASIPPFSTLIFEVELL 203
                 5.7899*******************************9..7*********************************.999************97 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   8.6e-23   7.7e-19       2      97 .]      11     108 ..      10     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 8.6e-23
      FKBP_N   2 dkvsYalGlsigqqlkaqg.keldkdavlaGlkdalkgksk.ltdeeiqevlqalqeklqekqeeeaeknkaegeaFlaenkkkeGVkttesGLqYkV 97 
                 +++sY +Gl++gqql ++g + l+ +a+laGl+dal+g+s+ +  + ++++l++++e++++ ++e+ e+ +aeg+aFl++ +++eGV +tesGLq+ V
  EHU02190.1  11 AQASYGIGLQVGQQLLESGlQGLQPEALLAGLRDALEGNSPaVPVDVVHRALREVHERAESVRRERVEAMAAEGQAFLQDHAQREGVSSTESGLQFSV 108
                 689***********66665166****************999566679************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1534.98
//
Query:       EHU02191.1  [L=221]
Description: hypothetical protein CKS_0734 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-34  115.4   0.0    1.2e-33  115.0   0.0    1.2  1  OapA      Opacity-associated protein A LysM-like domain
      2e-09   37.1   5.0    3.8e-09   36.2   5.0    1.5  1  OapA_N    Opacity-associated protein A N-terminal motif


Domain annotation for each model (and alignments):
>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0   1.4e-37   1.2e-33       1      84 [.     137     220 ..     137     221 .] 0.98

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 1.4e-37
        OapA   1 ewkeyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvriklnaqgkvdelqlekgaksvlftRqsDGsfkrk 84 
                 +w++yq++ g+tLaq+FRdnnLp++dv+a+a+veG+d+plS lk+Gq+v+i+ +a+g v+ l+le  +  vlftRq DGsf r 
  EHU02191.1 137 DWHSYQIAAGQTLAQLFRDNNLPVNDVFAMARVEGNDQPLSTLKQGQQVKIRRDANGVVTGLTLEGANGPVLFTRQPDGSFLRV 220
                 59*******************************************************************************986 PP

>> OapA_N  Opacity-associated protein A N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   5.0   4.3e-13   3.8e-09       1      28 []      64      91 ..      64      91 .. 0.99

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.3e-13
      OapA_N  1 ifqrLPklHRrlliaLslvvlvlllwPs 28
                ++++LP +HRr+++++++++l+++lwPs
  EHU02191.1 64 WMDPLPAFHRRGIVIAVIILLLAFLWPS 91
                9**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1783.18
//
Query:       EHU02192.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-97  325.9   3.5      1e-96  323.7   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.3e-11   45.1   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.042   13.4   2.1      0.052   13.1   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.049   12.2   7.0      0.078   11.5   7.0    1.3  1  FUSC             Fusaric acid resistance protein family
      0.054   12.7   1.5       0.11   11.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.15   12.4   3.6       0.93    9.9   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   12.0   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.7   5.7       0.25   11.1   5.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
        0.2   10.9   0.3       0.32   10.2   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.21   11.3   2.2        0.8    9.4   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.23   11.2  10.2       0.38   10.5  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   11.6   3.7       0.55   10.6   1.8    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.47   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
          1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
        3.6    7.1   7.2        9.3    5.7   7.2    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.2    7.1   8.7         12    6.6   1.6    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5      0.12   1.1e+02     167     214 ..      34      82 ..      21     121 .. 0.47
   2 !  323.7   0.0   1.1e-99     1e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   + i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU02192.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   46666666667777777777763334432...33333333333333322211 PP

  == domain 2  score: 323.7 bits;  conditional E-value: 1.1e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02192.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02192.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02192.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.5e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.5e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02192.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.8e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02192.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   2.9e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.9e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU02192.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   5.8e-05     0.052     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.4   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU02192.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334444455555555566666677789999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02192.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.0   8.7e-05     0.078     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU02192.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00012      0.11      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02192.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3     0.001      0.93      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU02192.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02192.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   2.3e+03      26      52 ..      16      42 ..       9      60 .. 0.74
   2 ?    3.2   0.0     0.093        83      15      53 ..      64     102 ..      54     108 .. 0.81
   3 ?    5.1   0.0     0.023        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
         UME 26 laekkraikaleeliklagssissalp 52
                l+e++ +i+ + e  +l++++++ ++ 
  EHU02192.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYAS 42
                678888888888888888888766554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.093
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU02192.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02192.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.7   0.00028      0.25     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02192.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00034      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02192.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00036      0.32      24      76 ..      37      91 ..      32     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU02192.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00089       0.8     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.21   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU02192.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU02192.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.2   0.00042      0.38      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02192.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00061      0.55       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00061
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU02192.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU02192.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.6   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02192.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02192.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0011      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU02192.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0018       1.6      12      92 ..      13      95 ..       7     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02192.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55566667888999999999999999999999999999999999997744224445555555555555555555777776655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.2      0.01       9.3      71     152 ..      14      97 ..       2     102 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU02192.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666667777888889999999998877644677888999**********************998765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.6     0.014        12      22      53 ..      12      43 ..       9      65 .. 0.88
   2 ?    2.5   1.7      0.25   2.3e+02      34      57 ..      68      91 ..      44     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02192.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02192.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888988888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1457  (0.081265); expected 358.6 (0.02)
Passed bias filter:                     1070  (0.0596798); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 3987.54
//
Query:       EHU02193.1  [L=35]
Description: transposase, partial [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   20.3   0.0    0.00042   20.2   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.3e-08   0.00042      76     100 ..       2      26 ..       1      27 [. 0.90

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.3e-08
   TnpB_IS66  76 eeeaveltaeqlelLleGldlervk 100
                 ++++++lt++ql++LleG+++++++
  EHU02193.1   2 RDGKIHLTPAQLSMLLEGINWKHPQ 26 
                 57899*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       177  (0.00987227); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 309.86
//
Query:       EHU02194.1  [L=282]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-42  143.0   0.0    1.1e-41  142.5   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    6.9e-09   35.5   1.6      1e-08   35.0   0.4    2.0  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   1.2e-45   1.1e-41       3     207 ..      62     264 ..      60     266 .. 0.91

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 1.2e-45
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                      ++g Lri a + +  ++l+p++++fr+ryPe+ l+l +++  ++++l+++  +D+airag ++dsgl+ar L++  +  +asp++ L++ g pv
      EHU02194.1  62 APKGLLRIDAATPVILHHLMPMIKAFRERYPEIALSLISSE--NFINLIERK-VDVAIRAGSLTDSGLRARLLFTSYRRFIASPGY-LEKyGIPV 152
                     689***********************************999..****55555.*********************************.******** PP

                     CGGGGCTSEEEEESTTST.HHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST.TCEEEEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg.lrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep.plprelylvyr 188
                      ++dL +++++ + +  + +r+ +   +++ +l + r  l +ns e++++l++ G Gia+l++++v++e+adg lv +  ++  p+++++ +vy 
      EHU02194.1 153 CAADLDNHQCLGFIDAPRlNRWPIA--CDDGELYIiRSELDSNSGETIKQLCLDGNGIACLSDYMVHKEIADGSLVEILADQRlPVEMPFNAVYY 245
                     *************655554888888..666666666999*************************************66555555666******** PP

                     TTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflrea 207
                     ++   s +vrafidfl e+
      EHU02194.1 246 SDLGVSQRVRAFIDFLSEW 264
                     ****************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.4   1.2e-12     1e-08      25      60 .]       1      36 [.       1      36 [. 0.96
   2 ?   -2.6   0.0      0.61   5.5e+03       5      22 ..      37      54 ..      37      61 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.2e-12
                S-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1 25 lsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++ +avsr ik+LE+ lg  L++Rt+r+l LT++Ge
  EHU02194.1  1 MANSAVSRTIKKLENKLGLALLTRTTRNLALTQEGE 36
                5689*******************************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.61
                HHHHHHHHHSSHHHHHHH CS
       HTH_1  5 rlfvavaeegsftrAAee 22
                r+f++v     +  AAe 
  EHU02194.1 37 RYFQQVQHFLQVKTAAED 54
                678888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 2527.55
//
Query:       EHU02195.1  [L=43]
Description: hypothetical protein CKS_5014 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 398.20
//
Query:       EHU02196.1  [L=67]
Description: hypothetical protein CKS_5015 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 608.03
//
Query:       EHU02197.1  [L=71]
Description: hypothetical protein CKS_5016 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 663.54
//
Query:       EHU02198.1  [L=38]
Description: hypothetical protein CKS_5017 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       135  (0.0075297); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 329.12
//
Query:       EHU02199.1  [L=119]
Description: hypothetical protein CKS_5018 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0005   19.9   0.0       0.44   10.5   0.0    2.5  2  Pentapeptide_2  Pentapeptide repeats (8 copies)
  ------ inclusion threshold ------
        3.8    5.5  10.1        4.4    5.3  10.1    1.0  1  Sporozoite_P67  Sporozoite P67 surface antigen
        5.3    7.0   9.5    1.8e+03   -1.2   9.4    3.1  1  GCV_H           Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> Pentapeptide_2  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   7.4e-05      0.44       4      39 ..      24      59 ..      21      64 .. 0.64
   2 !    6.4   0.0    0.0013         8       8      35 ..      73     100 ..      67     103 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.4e-05
  Pentapeptide_2  4 GslNsGsgNtGffNlGsgNtGsfNlGsgNtGsgntG 39
                    G++ +G++ +G + +G + +G + +G++ +G   +G
      EHU02199.1 24 GTAQVGTAQVGIAQVGIAQVGIAQVGTAQVGTAQVG 59
                    566666666666666666666666666666665555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0013
  Pentapeptide_2   8 sGsgNtGffNlGsgNtGsfNlGsgNtGs 35 
                     +G + +G + +G++ +G + lG + +Gs
      EHU02199.1  73 VGIAQVGIAQVGTAQVGIAQLGIAQVGS 100
                     5555555555555555555555555554 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  10.1   0.00074       4.4     186     244 ..      30      89 ..      11     107 .. 0.38

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00074
  Sporozoite_P67 186 v..vgvpGlgvpGvGvpGvggvgv.lpgvgvprvgvapgvGvgglggvpgvgvlesnssseG 244
                        vg++ +g++ vG+  vg + v +  vg ++vg+  +vG+    g+  vg+ + ++++ G
      EHU02199.1  30 TaqVGIAQVGIAQVGIAQVGTAQVgTAQVGTAQVGI-DQVGID-QVGIAQVGIAQVGTAQVG 89 
                     122333333333333333332222111233333332.233333.233333333333333322 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   9.4      0.29   1.8e+03      32      32 ..      55      55 ..       9     104 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.29
                S CS
       GCV_H 32 d 32
                 
  EHU02199.1 55 T 55
                2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      101  (0.00563333); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1071.15
//
Query:       EHU02200.1  [L=70]
Description: hypothetical protein CKS_5020 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 591.33
//
Query:       EHU02201.1  [L=298]
Description: hypothetical protein CKS_5021 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-16   59.4   0.0      6e-16   58.9   0.0    1.2  1  YqaJ             YqaJ-like viral recombinase domain
  ------ inclusion threshold ------
      0.075   13.1   2.0       0.16   12.1   2.0    1.5  1  BRE1             BRE1 E3 ubiquitin ligase
       0.11   13.0   0.3       0.22   12.0   0.3    1.4  1  Snapin_Pallidin  Snapin/Pallidin


Domain annotation for each model (and alignments):
>> YqaJ  YqaJ-like viral recombinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0     1e-19     6e-16       6     147 ..       9     142 ..       6     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1e-19
        YqaJ   6 RrkgisaSdfaaalgtsrvsdsvrllldkvgtaiaeehefkenaftawGtelEplaraeyelatgdkvrdsgglfespsdkflgaspDgiishasidal 104
                 R+k+i++Sd+a +lg+s+++++++++ldkv+  ++   + k ++   +G+++Ep + ++ +++tg  +++ g+ + +p+ +f++a +D  +    +   
  EHU02201.1   9 RTKYIGGSDVAGILGISPWRTALDVYLDKVQPRKEPPSPGK-QKIFTRGQRMEPYVIDLLSEETGLVIARRGERYIDPELPFIAAEIDAEA----E--- 99 
                 99*****************************9664455555.555569*******************************************....2... PP

        YqaJ 105 krrllEikspfealyvstklgrqe..eipeeYmcQiqgqlavtga 147
                   + +Eik+ +   + + ++g+q+  +ip +Y  Q ++ l vtg+
  EHU02201.1 100 SGENIEIKTCSP--FKAREWGEQQtdSIPVYYTAQAMHGLMVTGK 142
                 35789*******..*****************************97 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.0   2.6e-05      0.16      18      73 ..     213     268 ..     209     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
        BRE1  18 qlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsse 73 
                 ++ + +++l  l+ k++ l+ e++ a+qk +  m +   +  + kkL +  +++s 
  EHU02201.1 213 KALDALFKLRELQAKQKELKDEIEFAEQKLKIFMQDNSYISLDGKKLATWRTQNST 268
                 6677889****************************************999888876 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   3.6e-05      0.22      21      51 ..     220     250 ..     214     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
  Snapin_Pallidin  21 klkelrqsQeeLleqldrlnekLkeleeaqe 51 
                      kl+el+++Q+eL+++++   +kLk + ++++
       EHU02201.1 220 KLRELQAKQKELKDEIEFAEQKLKIFMQDNS 250
                      89*********************98777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 2729.58
//
Query:       EHU02202.1  [L=277]
Description: recombination and repair protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-57  192.4   0.0    7.5e-57  192.0   0.0    1.1  1  RecT      RecT family


Domain annotation for each model (and alignments):
>> RecT  RecT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.0   4.2e-61   7.5e-57       2     192 ..      51     251 ..      50     258 .. 0.93

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 4.2e-61
        RecT   2 nfsrsaltilkknpkLakanpesllaalmqaaqlgLnPfk..kqaYlvpy.........kgkgkgeaqlivgykgfiklakrsgqyagieaevvyegde 89 
                 +++r+a+t+l+k+pkL++++++s+l+a+mq+aqlgL+P+   ++aYl p+         +++  +e qli+gy+g+i+la+rsgq+ + +a++vye+d+
  EHU02202.1  51 RLARIAMTELRKTPKLMQCDQMSFLGAIMQCAQLGLEPGGalGHAYLLPFdkrqkqgnqWVTVATETQLIIGYRGMIDLARRSGQIVSLSARAVYENDQ 149
                 7899****************************************************99999999*********************************** PP

        RecT  90 feyerg.kdepeeevkgtaedergeligayavvklkdgeepfveemsleeiekrrskssktnsspWakdpeeMakKtalkqalrkalplsie..gayte 185
                 f+y +g +++ e+  ++  + + g+l  +yav++lkdg+++f e+ms++ ++++r+ s+ + ++pW++++eeMakKta+++++ k+lp sie  +a+t 
  EHU02202.1 150 FSYAYGlEEKLEHIPNE--DGNPGALTHVYAVARLKDGGVQF-EVMSKAAVDRVRALSKSSDKGPWVDHYEEMAKKTAIRRLF-KYLPVSIElqRAVTL 244
                 ******54444444422..7899*******************.*************9999999********************.*************** PP

        RecT 186 dElreee 192
                 dE  +++
  EHU02202.1 245 DEKADAD 251
                 **95544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2035.47
//
Query:       EHU02203.1  [L=51]
Description: hypothetical protein CKS_5023 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 462.19
//
Query:       EHU02204.1  [L=117]
Description: hypothetical protein CKS_5024 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.3   0.0      0.025   14.8   0.0    1.2  1  DUF1024   Protein of unknown function (DUF1024)
      0.076   13.3   0.1       0.13   12.5   0.1    1.4  1  HALZ      Homeobox associated leucine zipper
      0.086   12.9   0.2       0.14   12.2   0.2    1.3  1  DHR10     Designed helical repeat protein 10 domain
       0.15   10.8   0.0       0.15   10.7   0.0    1.1  1  Adeno_PV  Adenovirus minor core protein PV


Domain annotation for each model (and alignments):
>> DUF1024  Protein of unknown function (DUF1024)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   5.7e-06     0.025      17      63 ..      17      63 ..       5      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-06
     DUF1024 17 yngndtegllkeiedvykkaqafdeilegmtnaiqhsvkegieldea 63
                 n nd eg +   ed     q +d ++ g+ +ai+h  +  +eld a
  EHU02204.1 17 INYNDPEGEFVYYEDYAALQQKMDALVGGFEEAIRHKDRLAVELDAA 63
                588******************************************87 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.9e-05      0.13       6      42 ..      31      67 ..      30      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
        HALZ  6 DYdvLKasYdaLksdydsLkkenekLkaelqeLkekl 42
                DY++L+++ daL   ++   +++++L  el   +ekl
  EHU02204.1 31 DYAALQQKMDALVGGFEEAIRHKDRLAVELDAANEKL 67
                9*****************************9888887 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   3.1e-05      0.14      61     108 ..      34      81 ..      30      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
       DHR10  61 elrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekreaa 108
                 +l+++++ +    +e  r+++rl   l+ a+ekl+r+  +a + ++ a
  EHU02204.1  34 ALQQKMDALVGGFEEAIRHKDRLAVELDAANEKLSRYSMSAGQADQFA 81 
                 67888888888899************************9998877755 PP

>> Adeno_PV  Adenovirus minor core protein PV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.4e-05      0.15     102     152 ..      29      80 ..      12     108 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.4e-05
    Adeno_PV 102 ygdedlleqane.rlgefaygkrhkdmlalpldegnptpslkpvtlqqvlpt 152
                 y d   l+q  +  +g f    rhkd la+ ld  n   s   ++  q    
  EHU02204.1  29 YEDYAALQQKMDaLVGGFEEAIRHKDRLAVELDAANEKLSRYSMSAGQADQF 80 
                 4555566665551579********************9888776666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1062.34
//
Query:       EHU02205.1  [L=221]
Description: phage-related protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 2111.70
//
Query:       EHU02206.1  [L=53]
Description: hypothetical protein CKS_5026 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 466.11
//
Query:       EHU02207.1  [L=68]
Description: hypothetical protein CKS_5716 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 600.64
//
Query:       EHU02208.1  [L=168]
Description: hypothetical protein CKS_5028 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1495.70
//
Query:       EHU02209.1  [L=59]
Description: hypothetical protein CKS_5029 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.018   15.3   0.0    1.2  1  PGDYG     PGDYG protein


Domain annotation for each model (and alignments):
>> PGDYG  PGDYG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   9.9e-07     0.018       5      36 ..      24      55 ..      18      59 .] 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.9e-07
       PGDYG  5 yepGdaivtgetGdrWvvsrerfdakyvalkp 36
                +  Gd i+ g  G+ +  ++e fd+ y++++ 
  EHU02209.1 24 ASKGDWIIKGVKGEHYPCKPEIFDETYEPVTD 55
                467************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 452.31
//
Query:       EHU02210.1  [L=109]
Description: hypothetical protein CKS_5030 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   14.2   0.4       0.14   12.1   0.1    2.2  2  Nudix_N_2  Nudix N-terminal


Domain annotation for each model (and alignments):
>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.13   2.3e+03       4       9 ..      70      75 ..      70      78 .. 0.74
   2 ?   12.1   0.1   7.7e-06      0.14       1      15 [.      89     104 ..      89     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.13
                TTT--B CS
   Nudix_N_2  4 sqCGtp 9 
                s+CG+ 
  EHU02210.1 70 SACGSS 75
                689975 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.7e-06
                 -B-TTT--B-E.EE-- CS
   Nudix_N_2   1 kFCsqCGtpve.lrip 15 
                 +FC++CG++v   + p
  EHU02210.1  89 NFCQKCGGKVMlPAAP 104
                 7********8734444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 887.90
//
Query:       EHU02211.1  [L=96]
Description: hypothetical protein CKS_5031 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   13.0   0.0       0.17   12.7   0.0    1.1  1  YodL      YodL-like


Domain annotation for each model (and alignments):
>> YodL  YodL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-06      0.17      32      79 ..      25      73 ..      16      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.7e-06
        YodL 32 idaenYelvyegelsetetleeiyekfnid..hpedfkghslSvSDvvel 79
                 +a++Y   y g++ +++ le+    f+ d  + ed+  + +  SDvve 
  EHU02211.1 25 SRASHYAHEYGGDV-TKSLLEDTLPLFDADsyEIEDWAANNMNWSDVVEH 73
                5789**********.999**********9966779*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 803.78
//
Query:       EHU02212.1  [L=347]
Description: phage integrase family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-33  114.2   0.0    1.1e-32  113.2   0.0    1.6  2  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       0.4   7.1e+03     153     167 ..      69      83 ..      66      84 .. 0.79
   2 !  113.2   0.0   6.3e-37   1.1e-32       2     170 ..     161     316 ..     160     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.4
                      HHHT-SSCCHHHHHH CS
  Phage_integrase 153 kllGHssisttqiYt 167
                      ++ G s+i+ t+iY+
       EHU02212.1  69 DAEGNSNIANTRIYA 83 
                      5567799*******8 PP

  == domain 2  score: 113.2 bits;  conditional E-value: 6.3e-37
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      ++++ ++++l+++le     + k l  +++ tG+R  E+lsL+++d+dl ++++ +++++ K++++r++pls+ea+  l+++ + +       e
       EHU02212.1 161 WIDKSDARALVDNLEH---QWMKWLCSFALLTGARLREILSLTWQDIDLGRRRAVIKAENAKSGRARQLPLSDEAVAILRQIPNSH-------E 244
                      789999**********...9***********************************************************9998888.......* PP

                      BSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  96 llfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      ++f s    ++ +  +r  f+ra + +gi+ ++++H+lRh++a++ ++ g +l+v+++l+G++ +++++ Y+h++
       EHU02212.1 245 YVFSSD--GRKHDYFIRSDFNRALRLTGIK-DFRFHDLRHTWASWHVQDGTPLMVLKELGGWEKLEMVNKYAHLS 316
                      *****9..8999******************.******************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2954.24
//
Query:       EHU02213.1  [L=356]
Description: S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.4e-131  436.3   0.0   7.2e-131  436.1   0.0    1.0  1  Queuosine_synth  Queuosine biosynthesis protein


Domain annotation for each model (and alignments):
>> Queuosine_synth  Queuosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.1   0.0    4e-135  7.2e-131       2     325 .]       4     343 ..       3     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 436.1 bits;  conditional E-value: 4e-135
                      -TT-----GGGB-SS--SSGGGSEEEEEETTTTEEEEEEGGGGGGG--TT-EEEEEEEEE-S-EEEEE--.---EEEEEEEE......EEEEEE CS
  Queuosine_synth   2 sdfdfeLpeeliAqePaeeRdesrLlvldrktgeiehkrfrdlvdlLregdlLvlNdtkviparllgekektggkvevlllkel....wealvk 91 
                      +df f+Lpe+liA++P ++R+ +rLl ld  tg+++h  f+d++d L++gdlLv+N+t+vipar++g+k+ +ggk+e+l+++ l    + a+v+
       EHU02213.1   4 ADFAFDLPESLIAHYPQAQRSGCRLLSLDGPTGALTHGVFTDVLDKLQPGDLLVFNNTRVIPARVFGRKA-SGGKIEMLVERMLddkrVLAHVR 96 
                      79*****************************************************************996.6*********9668888****** PP

                      S-TT--TT-EEEE.....EEEEEEEETT.S-EEEEEE......HHHHHH---------.......--------------------GGGG--HHH CS
  Queuosine_synth  92 pakklkageklel.....lkaevlekeeegerlvkfe..eeleelleelGevplppyikr.....dkerYqtvyakeegsvaaPtAglhFteel 173
                      ++k +k+g+ l l     +ka+++++ ++    + f+  +++ ++l+++G++plppyi+r     d+e Yqtvy+ ++g+vaaPtAglhF+e l
       EHU02213.1  97 ASKAPKPGAALLLgddesVKATMVAR-HDALFEIAFDddRDVLDILNRVGHMPLPPYIDRpdeeaDRELYQTVYSARPGAVAAPTAGLHFDEPL 189
                      ****************9999999997.45778888989999*****************88888889999************************* PP

                      HHHHHHHT-EEEEEEEEE--------------------EEEEE-HHHHHHHHHHHHHT--EEEESHHHHHHHH...H...HT..SSEEE----- CS
  Queuosine_synth 174 leklkakgvevaevtLhvGlgtfrpvevedieehkmhsEryevseetaeainaakaeggrviAVGTTsvRalEsaaseegaa..kaasgetdlf 265
                      l++lk+kgve+a+vtLhvG+gtf+pv+ve+ie+h+mh+E+ ev++++++a+ a+ka+g++v+AVGTTsvR+lEsaa++++ a  +++ ++t++f
       EHU02213.1 190 LQALKDKGVEMAFVTLHVGAGTFQPVRVETIEDHHMHAEYAEVPQDVVDAVLACKARGNKVVAVGTTSVRSLESAAKASQDAliAPFFDDTQIF 283
                      *************************************************************************999866655679999****** PP

                      --SS---SS-SEEEEE---TT-HHHHHHHHHH-HHHHHHHHHHHHHTT--BSTTS-EEEE CS
  Queuosine_synth 266 iypgykfkvvdaLlTnfhlPkStllmlvsAfagrekileaYkeAveekYrFfsyGDamli 325
                      iypgy+++v+daL+TnfhlP+Stl+mlvsAfag++++++aY++Av+e+YrFfsyGDam+i
       EHU02213.1 284 IYPGYEYQVIDALITNFHLPESTLIMLVSAFAGYQHTMAAYRAAVAEEYRFFSYGDAMFI 343
                      **********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2821.89
//
Query:       EHU02214.1  [L=193]
Description: ACP phosphodiesterase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-29  101.9   3.2    3.8e-29  101.2   3.2    1.3  1  ACP_PD    Acyl carrier protein phosphodiesterase


Domain annotation for each model (and alignments):
>> ACP_PD  Acyl carrier protein phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   3.2   2.1e-33   3.8e-29       1     105 []      81     186 ..      81     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 2.1e-33
      ACP_PD   1 yDhfLarnwseys.aepLeefvqrvyaqlekneealPerlqrllprmieedwLesYaelegieralqrma.rrlkrasklaeaieeleenyaeleadFl 97 
                 +DhfLar+w++ + +++L++f++r+++++ ++ +a+Pe++++l++ m++e+w+e+Ya++  +er+l++ma rr++ a+ l++++++++++y ++ea+F 
  EHU02214.1  81 WDHFLARHWDRVHpSQTLQAFTARAEREIVPQLAATPEEFKELNAVMWRERWFEHYADPLRLERVLNGMArRRPRLAA-LSDSYQDFTAHYPAFEACFF 178
                 9***********84677*****************************************************66666666.******************** PP

      ACP_PD  98 effpella 105
                 +f+p+l++
  EHU02214.1 179 QFYPRLMQ 186
                 ******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1431.35
//
Query:       EHU02215.1  [L=271]
Description: inositol-1-monophosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-54  182.8   0.0    1.1e-53  182.6   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   0.0     6e-58   1.1e-53       6     254 ..      13     257 ..       8     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 6e-58
                 HHHHHHHHHHHHHHHHHHTT.TSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT- CS
  Inositol_P   6 tkaavelaakagevlreefs.enelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgi 103
                 ++ a+e+a++a+    + ++  ++lv+e+k     +d+v++ad+ veeli++ +ae++p++++lgee++++       e++  w++DPiDGT+ Fv+g 
  EHU02215.1  13 YRYACEIARAAASRALSWYQqRQKLVVEHKR--DLQDVVSEADRNVEELIKSLIAERYPEDAVLGEESGGETG-----EARILWVIDPIDGTACFVNGL 104
                 6678999997777777777757777777777..99***********************************999.....777****************** PP

                 SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHH CS
  Inositol_P 104 pqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaa 202
                  +++Vs++++ eg+pv+Gv+++P +++l++a kg+Ga+ln+ +l++++a +++e ll + + +s+++  + ++l++++++   +    ++gs+al  a+
  EHU02215.1 105 HNWCVSLAIVCEGEPVVGVVCDPNHQELFHARKGQGAWLNETRLEVHQARHLNEGLL-GISNSSRVPGEKVTQLIDALLKQGGMF--IRIGSGALTSAW 200
                 **************************************************9999977.667777777777767777776666555..899********* PP

                 HHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC......SSSTTSSEEEEE CS
  Inositol_P 203 vaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge......grlllargiiaa 254
                  a+G++  y+e+  +++WD  +G+++ +eaGGv  d+  +      + +lla+ +i++
  EHU02215.1 201 AAAGRLIGYYEAH-MHPWDSLPGIVLMREAGGVTNDYMRNdglkngNPVLLANAVIYP 257
                 *************.************************99855554333344333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1988.97
//
Query:       EHU02216.1  [L=351]
Description: putative 3-phytase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-21   75.9   0.0    4.5e-21   75.6   0.0    1.1  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
    0.00087   19.0   0.0        1.1    9.0   0.0    2.3  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0     5e-25   4.5e-21      92     382 ..      10     276 ..       1     277 [. 0.86

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 5e-25
                 HHCH.TCCHTTSS--.TTEEEEEESSHHHHHHHHHHHHHHCHCCC---.S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHC....HHH CS
  His_Phos_2  92 qrYp.lgLlrlhlty.kdlkirassegRviaSAaafakGllglegelt.dllskdkdllddsnaakdlldeakkklkelltegaeacpafew....pik 183
                  +Y+ lgLl+++++    l++ras  +R++a+A+a + G ++++g      + + + l ++++  + ++d + + +++  ++g+   ++ ++     i+
  EHU02216.1  10 DHYRqLGLLPAGCPGaTALYVRASPLQRTRATAEALVDGAFPGCGVAVhTVTGDVDPLFQTEKLPFARIDPQREMEEKRRVAGD--LAQRQQqlqpAIQ 106
                 688899*******99******************************888666666777888899999999996655555555555..4444444577899 PP

                 TGGHCHHHHCHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHHHHHHHHHH.HHHC........TTTCCC CS
  His_Phos_2 184 vakrvdelvkylkedmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhnrylkdlee.lyklakvipqEygigpee 281
                   k+ +++ +  ++ +d++++  l+q+++g   ++  ++ + + + ++    +++ ++ +l     + a++  +l  l +  y+l        +   ++
  EHU02216.1 107 ALKQAVCAANRACPFFDRPWQ--LKQTKSGSVYVEGLSTLAAMVETLRLGY-SENLPFARLAWGHITSAQQITALLPLLTaSYDL-------SNDVLYM 195
                 9********************..9999999999999999999999999888.999******777788899999988887779***.......8999*** PP

                 CHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEEETCTTTEEEEE CS
  His_Phos_2 282 klkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaaldrlsaspelpymsqivfelyedssekkfyvrl 380
                 ++++G+lll+++l+ i+ +            +vr++l ++hd++i+ +  ++g++++l+g+          + +++p++s++v+e+++d++ +++y r+
  EHU02216.1 196 AQRRGSLLLQRMLDAIQGND----------PDVRWVLLVAHDTNIAMVRRLMGFEWQLPGY----------TRGNIPPGSSLVMERWRDKQSNQRYLRV 274
                 ******99888877776544..........4667***************************..........*****************977777***** PP

                 EE CS
  His_Phos_2 381 ll 382
                 ++
  EHU02216.1 275 YF 276
                 98 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00012       1.1      48      65 ..      30      47 ..      12      59 .. 0.82
   2 !    7.7   0.0   0.00029       2.6     123     187 ..     197     267 ..     189     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00012
                EEE-SSHHHHHHHHHHHH CS
  His_Phos_1 48 iysSplkRarqTaeliae 65
                + +Spl+R+r Tae++ +
  EHU02216.1 30 VRASPLQRTRATAEALVD 47
                579***********9976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHHTTTSE.....EEEEE-HHHHHHHHHHHH.T--GGGGGGB---TT-EEEEEE-SS-EE CS
  His_Phos_1 123 aaRvaaaleelaarheget.....vlvVsHggvirallarll.glpleelrrleldnaslsvlefdeggwr 187
                 ++R +  l++++++ +g++     vl+V+H + i ++ + +  +++l  + r ++++ s  v+e  +++++
  EHU02216.1 197 QRRGSLLLQRMLDAIQGNDpdvrwVLLVAHDTNIAMVRRLMGfEWQLPGYTRGNIPPGSSLVMERWRDKQS 267
                 556666666666666666666669*******9998777766567777777888889999888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2538.18
//
Query:       EHU02217.1  [L=450]
Description: putative cryptic proline transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.2e-105  352.5  54.4   3.6e-105  352.3  54.4    1.0  1  AA_permease     Amino acid permease
    3.4e-41  141.5  58.8    3.8e-41  141.3  58.8    1.0  1  AA_permease_2   Amino acid permease
    1.2e-06   27.6  17.7    1.2e-06   27.6  17.7    3.2  3  Spore_permease  Spore germination protein
  ------ inclusion threshold ------
       0.13   12.0   2.0       0.37   10.6   0.9    2.4  1  Gemini_mov      Geminivirus putative movement protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.3  54.4  7.9e-109  3.6e-105       1     471 [.      15     448 ..      15     450 .] 0.96

  Alignments for each domain:
  == domain 1  score: 352.3 bits;  conditional E-value: 7.9e-109
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ ++alg++iGtglf g++ +++ aGp ++llay+++g+v +++m++lge+++n+p++++f+ ya+++lgp +G+ +G+ y+f  ++v+++++ta +
   EHU02217.1  15 HIRFMALGSAIGTGLFYGSADAIRMAGP-SVLLAYIIGGAVAYIIMRALGEMSVNNPQASSFSRYAQDYLGPMAGYITGWTYCFEILIVAIADVTAFG 111
                  7889************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg..iillaggkpnkga..gfrflgdngsifknnlppgfak 192
                  i+++ w  ++++p  w++++ +++++ ++nl++vkv+ge+ef+++++k+ +ii +i+ g  + +++g + n g+  g+++l+ ng+    ++ +g   
   EHU02217.1 112 IYMGVW--FPEVP-HWIWVLSVVLIIGAVNLMSVKVFGEVEFWFSFFKVATIIVMILAGfgM-IIWGIG-NGGQptGIHNLWTNGG----FFAHG--- 197
                  ******..*****.*********************************************743.333333.3333359*********....*****... PP

  AA_permease 193 eeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlap 290
                       + +++  ++ v+fa+ Gie+++i+agE+kdP+ siP+ai++v +ri++fYv+ l++i++l p+n  g         spfv+ ++++g++++a+
   EHU02217.1 198 -----IVGMLLSLQMVMFAYGGIEIIGITAGEAKDPATSIPRAINSVPMRILVFYVGTLFVIMSLYPWNQVGTNG------SPFVLTFQHLGIAAAAS 284
                  .....*****************************************************************98888......9**************** PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  ++n+v+lta ls++ns ++   R+l+ +a++g+aPkv+ kvs rg P++ ++++m++ l+a+ l++l ++  +vf ++ ++++++++ vw++i+ls++
   EHU02217.1 285 ILNFVVLTASLSAINSDVFGVGRMLHGMAQQGHAPKVFMKVSARGIPWVTVVVMMFAMLIAVWLNYLMPE--KVFLVIASLATFATVWVWIMILLSQI 380
                  **********************************************************************..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvk 471
                   fR++  + + ++++l f ++++++++ +++a+l++i+ + ++++ ++             +++y+++++++++l+g+kl  k
   EHU02217.1 381 AFRRK--IGKAAARQLTFALPGGSWTAGFGVAFLCFIIGLIGYFPDTR-------------ISLYVGMVWIVLLLLGYKLVRK 448
                  *****..77777799*********************************.............*****************99765 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3  58.8   8.5e-45   3.8e-41       1     421 [.      11     439 ..      11     443 .. 0.86

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 8.5e-45
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ls++   ++++gs+ig+g f  +  ++  +gp+++l ++i+  +  ++ + ++ E+s   p     + y++   g+ ++++++w+++f +++v+ +
     EHU02217.1  11 LSTRHIRFMALGSAIGTGLFYGSadAIRMAGPSVLLAYIIGGAVA-YIIMRALGEMSVNNPQASSFSRYAQDYLGPMAGYITGWTYCFEILIVA-I 104
                    56777889************999998888***9888777766665.4556699***9779********************************88.5 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdt..ff 183
                      + a++ ++++++p++ ++ w        +++++ ++n++++k  + + ++   +k+  ++i++i++g+ ++  g+ +       ++ +++  ff
     EHU02217.1 105 ADVTAFGIYMGVWFPEVPHWIWVL-----SVVLIIGAVNLMSVKVFGEVEFWFSFFKV-ATIIVMILAGFGMIIWGIGNGGqptgiHNLWTNggFF 194
                    566677777777899997764333.....45788999*********************.6**********99966555544444566666658899 PP

  AA_permease_2 184 pngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivv 277
                    ++g  g+ll+l +v+++++G+e +   + e+k   + +p+ai+++ + +lv+y+++ ++++   p++++ ++++   ++ l f+ +g  ++a+i++
     EHU02217.1 195 AHGIVGMLLSLQMVMFAYGGIEIIGITAGEAKDpaTSIPRAINSVPMRILVFYVGTLFVIMSLYPWNQVGTNGS---PFVLTFQHLGIAAAASILN 287
                    99****************************9987568********************************97443...699**************** PP

  AA_permease_2 278 ilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilr 373
                    +++  ++l ain+ v+g+ r+l+ +a++g  P++f kv+++g+p++++++ +   li + l +l +++ + +++s+++++ ++++++++++ +  r
     EHU02217.1 288 FVVLTASLSAINSDVFGVGRMLHGMAQQGHAPKVFMKVSARGIPWVTVVVMMFAMLIAVWLNYLMPEKVFLVIASLATFATVWVWIMILLSQIAFR 383
                    *************************************************99999999999999999***********************9999888 PP

  AA_permease_2 374 kkrphl.kr......pgkilvaiigalfllfll.valffppkgpatqssliytiil 421
                    +k  +   r      pg  ++a +g+ fl+f++  +++fp  +++ + ++ + ++l
     EHU02217.1 384 RKIGKAaARqltfalPGGSWTAGFGVAFLCFIIgLIGYFPDTRISLYVGMVWIVLL 439
                    77433324478878887777777787777777757888888888888877655444 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6  17.7   2.8e-10   1.2e-06       2     256 ..      11     280 ..      10     298 .. 0.80
   2 ?    0.3   2.8     0.054   2.4e+02      35      56 ..     331     352 ..     312     357 .. 0.81
   3 ?   -1.7   0.7      0.22   9.8e+02      26      45 ..     362     381 ..     355     384 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.8e-10
  Spore_permease   2 istkqlfvlivsfqlGvgiltlprsvaeqatpdgWisvllagiiililvllmlkllkkfpe.ktliellkkilgkwLGsllsilfilyFlllaaf 95 
                     +st+ + ++     +G+g+ +  + ++  a+p+  ++ +++g ++ i++  + +++ ++p+ +++  + +++lg + G + +  ++   l++a+ 
      EHU02217.1  11 LSTRHIRFMALGSAIGTGLFYGSADAIRMAGPSVLLAYIIGGAVAYIIMRALGEMSVNNPQaSSFSRYAQDYLGPMAGYITGWTYCFEILIVAIA 105
                     7899999**********************************99999998888887776665167789**************************** PP

  Spore_permease  96 elRefseliqvflledtplwiiilllllvilYlvvkGieslar........eflfiivilliilllillfslklae...iknlr...Pvlgngik 176
                      +  f+  + v+ ++++p wi +l ++l+i  +   +++++          +++ iiv++l+ + +i+  + +  +   i+nl      + +gi+
      EHU02217.1 106 DVTAFGIYMGVW-FPEVPHWIWVLSVVLIIGAVNLMSVKVFGEvefwfsffKVATIIVMILAGFGMIIWGIGNGGQptgIHNLWtngGFFAHGIV 199
                     **********99.799*****999999998776666666666554455333333333344444444444444444522255554222457789** PP

  Spore_permease 177 pvlkslkttslsflgveillllvpflkdkkkvkkaallgvlistl.lyllttlivilvlsveqlkkatwptlsllkvievp 256
                      +l sl+ ++++++g+ei+ +     kd+ ++   a+ +v + +l +y+ t+++ ++ +  +q+ +   p++ +++ + ++
      EHU02217.1 200 GMLLSLQMVMFAYGGIEIIGITAGEAKDPATSIPRAINSVPMRILvFYVGTLFVIMSLYPWNQVGTNGSPFVLTFQHLGIA 280
                     ********************************9999999999887367777788888899999999999999999888775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.054
  Spore_permease  35 gWisvllagiiililvllmlkl 56 
                      W++v++ ++++li+v+l + +
      EHU02217.1 331 PWVTVVVMMFAMLIAVWLNYLM 352
                     5****************99865 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.22
  Spore_permease  26 svaeqatpdgWisvllagii 45 
                     s+a+ at   Wi++ll  i+
      EHU02217.1 362 SLATFATVWVWIMILLSQIA 381
                     45555566778888887665 PP

>> Gemini_mov  Geminivirus putative movement protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9   8.4e-05      0.37      19      54 ..     318     352 ..     306     358 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.4e-05
  Gemini_mov  19 kPrvptaapssselpwsrvgeiailtlvavlvlYLl 54 
                 +P+v   + s+  +pw +v+++++ +l+av   YL+
  EHU02217.1 318 APKVFM-KVSARGIPWVTVVVMMFAMLIAVWLNYLM 352
                 555443.456789*****************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3347.61
//
Query:       EHU02218.1  [L=439]
Description: branched chain amino acid transporter (LIV-II) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.5e-154  513.2  36.0   6.3e-154  513.0  36.0    1.0  1  Branch_AA_trans  Branched-chain amino acid transport protein


Domain annotation for each model (and alignments):
>> Branch_AA_trans  Branched-chain amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.0  36.0  3.5e-158  6.3e-154       3     427 ..       8     428 ..       6     430 .. 0.99

  Alignments for each domain:
  == domain 1  score: 513.0 bits;  conditional E-value: 3.5e-158
  Branch_AA_trans   3 kdvlviglmlFalffGAgNlIfPpllGlaagenvlvailgFlltgvglpllgiiavaksgkglkelaervskvfallfaiilyLsiGplfaiPR 96 
                      kd+l++g+m+Falf+GAgN+IfPp++G+++ge+v+va+lgFllt+vglp++++ia+a++g+g+++l+++++k++++++a+++yL++Gplfa+PR
       EHU02218.1   8 KDILALGFMTFALFVGAGNIIFPPMVGIQSGEHVWVAALGFLLTAVGLPVITVIALARVGGGIDALSTPIGKIAGVVLATVCYLAVGPLFATPR 101
                      89******************************************************************************************** PP

  Branch_AA_trans  97 tgavafevavapllseeekalalliytlvffaialllslkpsklvdrvGkiLtPvllvlllilvvaaiikplgeikeaskayksaplikGfleG 190
                      t++v+fev++ap+++  + al l+iy+l++f++++ +sl+p+kl+d+vG+iL+P+++ +l++l vaa+++p+g +  a+++y++a++++Gf++G
       EHU02218.1 102 TATVSFEVGIAPITG--DGALPLFIYSLIYFVLVMGISLYPGKLLDTVGHILAPLKIAALTLLGVAALLWPAGGTIPATADYQRAAFSSGFVNG 193
                      ***************..9**************************************************************************** PP

  Branch_AA_trans 191 YlTmDalaslaFgiviveaikskgvkekkevikatikagliaavlLalvYlalallGatsaslakeaengaeiLskasqelfGslGsllLavii 284
                      YlTmD+l++l+Fgiviv+a +s+g+ + + ++++t+ ag+ia+v+L+lvYl+l+ lGa s +l+++++nga+iL++++q++fG++Gs++La++i
       EHU02218.1 194 YLTMDTLGALVFGIVIVNAARSRGIDNAALLTRYTVLAGIIAGVGLTLVYLSLFKLGAGSGALVDQNANGAAILHAYVQHTFGDMGSFFLAALI 287
                      ********************************************************************************************** PP

  Branch_AA_trans 285 tlacLtTavGLitavseyFskllpklsYkklvviftlisfllanlGltkiiavsvPvLvllYPlaialivlsllekllkskkvvykltllvtli 378
                      ++ac++TavGL++a++e+F ++lp lsYk+lv++++l+s++++nlGl+++i++s+PvL+++YP +i+l+vls++++++++++++++ t+lv+l+
       EHU02218.1 288 FIACMVTAVGLTCACAEFFAQYLP-LSYKTLVFVLGLFSMVVSNLGLSHLIQISIPVLTAIYPPCIVLVVLSFTQNIWNKSSRIIAPTMLVSLL 380
                      ************************.********************************************************************* PP

  Branch_AA_trans 379 valldalkalkikievlnsllkvlPlaeeglgWlvpalvgliigliikk 427
                      +++lda+k++++k e+l  + ++lPla++gl+Wl p+lv+l++++++++
       EHU02218.1 381 FGILDAIKTTGFK-EALPAFSQHLPLADQGLAWLPPSLVMLLLVALVDR 428
                      ***********99.99***************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3547.80
//
Query:       EHU02219.1  [L=367]
Description: vitamin-B12 independent methionine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-16   59.8   0.0    1.5e-15   57.4   0.0    1.9  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
    0.00017   21.2   0.1      0.056   13.0   0.0    2.2  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai
  ------ inclusion threshold ------
      0.051   13.4   0.1       0.14   12.0   0.1    1.8  1  VbhA         Antitoxin VbhA
       0.11   12.3   0.9       0.25   11.1   0.9    1.7  1  SHOCT        Short C-terminal domain
       0.13   12.3   0.0       0.33   10.9   0.0    1.7  1  DUF4334      Domain of unknown function (DUF4334)


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0     4e-19   1.5e-15       4     323 ..      11     364 ..       8     365 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 4e-19
                  B--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTE.E--SS--EEEETTEEE---EE-SS CS
  Meth_synt_2   4 ttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgf.aftkngwvqsygsrcvrppiivgd 100
                   t+GSf   a++++ar+++++ge+s++e ++  +e+i++vv++q e g+ v+ +ge+ Rg     f   l+g+  f++++ +q  g ++   ++ v +
   EHU02219.1  11 DTVGSFLRPAAIKQAREKYQAGEISADELREVENEAIRDVVAKQRENGLKVVTDGEFRRGWWHFDFFYGLKGVeHFEADQGIQFNGVQTKAHGVKVTG 108
                  59***********************************************************9999999*****9***************999997777 PP

                  ---..SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-....TTS..-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-T...TSSTT--SSG. CS
  Meth_synt_2 101 vsr..paamtvkesalaqsltdkpvkglltGpvtilnwsfvr....ddv..draeaaaqialalrdevkdLeaaGikviQiDep...alreGlplkk. 186
                   +   +++m  + + l+++  d+  k  +  p+ +   +  r     +v  d++    ++a   +d++++  aaG+  +Q+D+      +    +k+ 
   EHU02219.1 109 KLGfdGHPMLDHFRFLQGIAGDAVAKMTIPSPSVLHFRG-GRkvidAEVypDLDVYFDDLAQTYKDAIAAFYAAGCRYLQLDDTvwaY-LCSDDQKRe 204
                  664225667666666666666665554454444333332.221332122226788899**************************6632.222222223 PP

                  ..GGHHHHHHHHHHHHHHHHTTS-T...TSEEEEEES-S--CCCH.........HHHH..TT--SEEEESBSSS-SSGGGGTTT.T---SEEEEBSS- CS
  Meth_synt_2 187 ..adwaayldwaveafrldtiaaad...dtqvhtHlCyselndil.........saia..aldvDvitieasrsdeellealee.vkygrgvglGvyd 267
                    ++ + + + a   +r+ + a +d   d  v +H+C  ++              +i    ++vD+  +e  ++ +   e l+    ++++ +lG++ 
   EHU02219.1 205 irERGDDPEQLARTYARVLNKALEDkpaDLTVGLHVCRGNFRSTWiseggyepvAEILfgTVNVDAFFLEYDNHRSGGFEPLRFiRPSHQQAVLGLIT 302
                  54555667777766666666655542237889*********987668999877755543389**********999999***99978899********* PP

                  TTSSS--THHHHHHHHHCHHCTS-STSB-BB-SS-STTS-......HHHHHHHHHHHHHHHH CS
  Meth_synt_2 268 ihsprvpsmeeiaalikkaldvapkerlwvnPdCGLktrk......reearaalknmvdaAk 323
                  ++    + +++++a++++a++ +  +++  +P CG++  +        e  ++++++vd+A+
   EHU02219.1 303 TKVGELEDVDQVKARLQEATQYLSLDQICLSPQCGFASTEegnsltEAEQWQKIRLVVDVAN 364
                  ************************************97541111114455667777777775 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05     0.056      16      61 ..      22      67 ..      19      71 .. 0.96
   2 !    6.0   0.0     0.002       7.1     176     216 ..     163     203 ..     150     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES-- CS
  Meth_synt_1 16 lkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndf 61
                 +k+a e+y +g+is++eL+++ +e  ++ + kq+e g+++++ ++f
   EHU02219.1 22 IKQAREKYQAGEISADELREVENEAIRDVVAKQRENGLKVVTDGEF 67
                 699**************************************99998 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.002
                  HHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHH CS
  Meth_synt_1 176 llekLlpvYkelleeLkeagvewvqidEPalvldlekeele 216
                   +++L + Yk+ ++ + +ag++++q+d+ + ++  ++++++
   EHU02219.1 163 YFDDLAQTYKDAIAAFYAAGCRYLQLDDTVWAYLCSDDQKR 203
                  5789************************9877665555544 PP

>> VbhA  Antitoxin VbhA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     4e-05      0.14      24      42 ..      23      41 ..      19      42 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
        VbhA 24 vadleayvrGeIdadElvr 42
                + + e+y +GeI+adEl++
  EHU02219.1 23 KQAREKYQAGEISADELRE 41
                567799***********97 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9     7e-05      0.25       2      19 ..      21      38 ..      20      41 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
       SHOCT  2 aLekLkeLyarGeIteEE 19
                a+++ +e y++GeI+ +E
  EHU02219.1 21 AIKQAREKYQAGEISADE 38
                89***************9 PP

>> DUF4334  Domain of unknown function (DUF4334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.3e-05      0.33      13      32 ..     105     124 ..      97     127 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.3e-05
                 EEEEEEEESSSSEEEEEEEE CS
     DUF4334  13 vvsAtmvYDklPiiDhFRkV 32 
                 +v+  + +D++P+ DhFR  
  EHU02219.1 105 KVTGKLGFDGHPMLDHFRFL 124
                 6888899***********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2877.95
//
Query:       EHU02220.1  [L=306]
Description: periplasmic-binding component of an ABC superfamily phosphate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-29  103.8   0.0    2.6e-29  102.8   0.0    1.5  1  PBP_like_2      PBP superfamily domain
    1.8e-13   50.1   0.0    2.3e-13   49.7   0.0    1.1  1  PBP_like        PBP superfamily domain
    2.5e-08   33.9   3.0    1.8e-07   31.2   3.0    2.0  1  SBP_bac_11      Bacterial extracellular solute-binding protei
    6.8e-05   22.3   0.7     0.0033   16.8   0.2    2.8  2  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
       0.18   11.4   0.0        0.4   10.3   0.0    1.5  1  HAMP_N3         HAMP N-terminal domain 3


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   7.4e-33   2.6e-29      10     279 ..      25     277 ..      16     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 7.4e-33
  PBP_like_2  10 geifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplteseiaagwaangaggliqvpvaigaialvvnkdnpln.l 107
                 g++  aGs+t+  +++ + d+f+++apg+ v+++++GS+++  al +g+v++++++rp++++e  + ++a+ + ++  vpva +a+++vvn+ npl+ +
  EHU02220.1  25 GNLSSAGSDTLGYLMTLWGDDFSRQAPGVNVQVQASGSSTAPTALTAGAVQLGAMSRPMQADER-QAFEARYGYPPLAVPVAKDALVVVVNQRNPLReI 122
                 67899*********************************************************99.77888889************************** PP

  PBP_like_2 108 sreaLakIfs.gkI.................tnWndvlglpadgpIkvvhrsdgsgttflfstalaeqgpwtasgigasgsegvasavsn.ngaigyvs 187
                 + ++L ++fs  ++                 t W++        pI+ + r+  sgt+ +f+++ ++qg++     +  gs +v++av++ +  igy+s
  EHU02220.1 123 DPRQLDAVFSiTRLcgahqvpqrwgdlglhqTEWQQ-------RPIQRYGRNSASGTWGFFKQQALCQGDFRNDVAEFPGSAAVVQAVAGnPRSIGYAS 214
                 **********55549999999888888999999996.......9************************99884333333399999999666******** PP

  PBP_like_2 188 vaywlavkgysladvtngagkfvlptaataasalkvakiasnplawslqpveeniadgayPlsrftyiivyqpyayhgnnaalakaFldyll 279
                  ++ l              g+  lp           ++   +++++ + p  e+i  g+yP sr++y++v++++ ++    +l+ aFl  +l
  EHU02220.1 215 FGFHLS-------------GVRLLPV----------VT---KNGDA-VAPDPETIRTGRYPWSRPLYLYVNKAPGKP--LPPLVDAFLRQVL 277
                 **8882.............3334444..........22...22233.5555577889***************87544..2788888886655 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   6.3e-17   2.3e-13       3     152 ..      45     215 ..      43     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 6.3e-17
                 HHHHH-TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCHHCCCCCEEEEEEEEEEEE-CC-HCHCCCCHCCHHHS................... CS
    PBP_like   3 elaeknpgvrvavanvGsggGlkalrageadiagshlldketeeynapalrkaldgievvlvnlarreqglvvakgnpkk................... 82 
                  ++++ pgv v+v+ +Gs+++ +al ag++++++++++ + +e+  ++ +r    g +   v++a+++  +vv++ np++                   
  EHU02220.1  45 DFSRQAPGVNVQVQASGSSTAPTALTAGAVQLGAMSRPMQADERQAFE-AR---YGYPPLAVPVAKDALVVVVNQRNPLReidprqldavfsitrlcga 139
                 6999************************************99999999.44...2555689******************88888999999999999999 PP

                 ...--BGGGC.......-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCCG CS
    PBP_like  83 ...itnwkdl.......adaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgie 152
                     + w dl       +++p++ ++R+  SGt  +f ++      +++ ++++ +e   + av +aVa ++  +g++  
  EHU02220.1 140 hqvPQRWGDLglhqtewQQRPIQRYGRNSASGTWGFFKQQALC---QGDFRNDV-AEFPGSAAVVQAVAGNPRSIGYASF 215
                 9999999999999888888******************999844...45556665.699******************9865 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   3.0     5e-11   1.8e-07       5     229 ..      31     290 ..      27     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 5e-11
                 E-SSTHHHHHHHHHHH.HHHH---EEEEESSHHHHHHHHHHH...-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-T........... CS
  SBP_bac_11   5 aagslaaalrelaaaF.eahtgvkvevsaggsgklarqiadga.rpDvwipassawlellaaaglvqaesavplassplviavpkgnp........... 90 
                  + +l   ++   ++F ++++gv+v+v+a gs+++  ++++ga +  +++   +a  +++ +a+++ ++ avp+a+  lv++v++ np           
  EHU02220.1  31 GSDTLGYLMTLWGDDFsRQAPGVNVQVQASGSSTAPTALTAGAvQLGAMSRPMQADERQAFEARYGYPPLAVPVAKDALVVVVNQRNPlreidprqlda 129
                 5778888999999***8889***********************999999988888889999**************************877777777777 PP

                 ...........T---SHHHHHHS..S-..-EEEE--T-TTTTHH.HHHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT....-SEEEEEHHHHH CS
  SBP_bac_11  91 ...........kkikgwadLlkp..gl..klavadPttspsGlaalalleaagaqellkalekkvvklgessrqlltaveage....adagivyeseak 170
                            + ++ w dL+    ++  + +    ++s+sG  ++++++++    l +  +++ v + ++s  +++av+ +     ++ +   +s + 
  EHU02220.1 130 vfsitrlcgahQVPQRWGDLGLHqtEWqqRPIQRYGRNSASG--TWGFFKQQA---LCQGDFRNDVAEFPGSAAVVQAVAGNPrsigYASFGFHLSGVR 223
                 777777766544577888855542266666666666666666..679999876...7777777766677788888888775532332333334477776 PP

                 ..H.STTSSEEEE--TTT--...........EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 171 aae.ngdkleavylpeglnld........pldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 + +   ++++av++ +++  +        pl++++  + + + +   +aFl+ ++s+++q+++ ++G+
  EHU02220.1 224 LLPvVTKNGDAVAPDPETI-RtgrypwsrPLYLYVNKAPGKPLPPLVDAFLRQVLSSQGQQRVSEAGY 290
                 6653777999999977775.3233444445555555555668889**********************9 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   9.1e-07    0.0033      15     101 ..      33     130 ..      24     206 .. 0.84
   2 ?    2.9   0.0     0.017        62     178     206 ..     248     278 ..     224     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.1e-07
                     CCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.............CCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate  15 tlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.............edsglearpLaeeplvlvaspdhpLargepv 96 
                     ++  yl++ +  +f ++ P+v ++++++ s++   +l +g + l+ +++p               ++   a+p+a++ lv+v+ +  pL + +p 
      EHU02220.1  33 DTLGYLMTLWGDDFSRQAPGVNVQVQASGSSTAPTALTAGAVQLGAMSRPMqaderqafearygYPPL--AVPVAKDALVVVVNQRNPLREIDPR 125
                     55679999999***************************************999966666655433333..7799999999999999998776565 PP

                     CGGGG CS
  LysR_substrate  97 sledL 101
                     +l+++
      EHU02220.1 126 QLDAV 130
                     55544 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.017
                     TCEEEEEEEEET..TCCCHHHHHHHHHHHHH CS
  LysR_substrate 178 plprelylvyrk..grelspavrafidflre 206
                     p +r+lyl+++k  g++l+p+v af++++++
      EHU02220.1 248 PWSRPLYLYVNKapGKPLPPLVDAFLRQVLS 278
                     55577777776533799*********99876 PP

>> HAMP_N3  HAMP N-terminal domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011       0.4      11      31 ..     180     200 ..     179     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
                 HHHTS----------GGGHHH CS
     HAMP_N3  11 ayaeGdfsadlerlPGkkafI 31 
                 a  +Gdf  d  ++PG  a++
  EHU02220.1 180 ALCQGDFRNDVAEFPGSAAVV 200
                 5668*************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2310.44
//
Query:       EHU02221.1  [L=439]
Description: sensory histidine kinase in two-component regulatory system with PhoB [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-29  102.6  10.4    1.1e-29  102.6  10.4    2.1  2  PhoR         Phosphate regulon sensor protein PhoR
    3.2e-23   82.4   0.0    5.6e-23   81.6   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      2e-18   66.2   1.2    4.7e-18   65.0   0.9    1.8  2  HisKA        His Kinase A (phospho-acceptor) domain
    5.5e-08   32.8   0.0    1.4e-07   31.5   0.0    1.8  1  PAS          PAS fold
    3.5e-06   26.9   0.0    5.6e-06   26.2   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    2.3e-05   24.3   0.0      4e-05   23.6   0.0    1.3  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00021   21.3   0.0    0.00057   19.8   0.0    1.7  1  PAS_8        PAS domain
     0.0049   17.1   0.0      0.042   14.1   0.0    2.3  1  PAS_4        PAS fold
  ------ inclusion threshold ------
      0.061   13.2   2.4       0.11   12.3   2.4    1.3  1  DUF2955      Protein of unknown function (DUF2955)
        0.1   12.7   0.3       0.35   11.0   0.3    1.9  1  HR1          Hr1 repeat
       0.14   12.4   0.0       0.37   11.1   0.0    1.8  1  PAS_9        PAS domain
       0.17   11.5   0.2       0.32   10.7   0.2    1.4  1  DUF4391      Domain of unknown function (DUF4391)


Domain annotation for each model (and alignments):
>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6  10.4   7.5e-33   1.1e-29       1      86 []       6      91 ..       6      91 .. 0.99
   2 ?   -0.2   0.0      0.89   1.3e+03      60      85 ..     180     205 ..     169     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 7.5e-33
        PhoR  1 swrrlllrlallllaallvgllvgalaallllalllllawhlyqllrLsrWLrkpkklepPdgsGlWeeifdglyrlqkrnrkrrk 86
                sw+rll++l+l++l+al++gll+g+l++llll+++++l+wh+y+l+rLs+WL++++ ++pP+g  +We +f+gly++q rnr+rr+
  EHU02221.1  6 SWKRLLSELVLACLPALVLGLLFGYLPWLLLLSVVGILLWHFYNLMRLSHWLWQDRTMTPPSGQASWEPLFYGLYQMQLRNRRRRR 91
                6***********************************************************************************96 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.89
        PhoR  60 pPdgsGlWeeifdglyrlqkrnrkrr 85 
                 +P ++G W  + + + ++++ + +rr
  EHU02221.1 180 MPYSEGQWLMVARDVTQMHQLEGARR 205
                 7999999*999999999998777766 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   3.8e-26   5.6e-23       2     109 ..     314     422 ..     313     425 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 3.8e-26
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHH.HHHHTTTEEEEEEET CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkk.lvelmgGeiwvesep 98 
                 + ++Lr +isnlv Nav++++++++i+++  +s++  v++v DnG+Gip e++++l e+f++ d++++r +gg+GlGl+ivk  l+  ++ +++++s p
  EHU02221.1 314 NDEQLRSAISNLVYNAVNHTPDSTRIDISWLRSKQGAVFKVCDNGPGIPAEHIPRLTERFYRvDKARSRATGGSGLGLAIVKHaLSH-HNARLEITSIP 411
                 5679***************7788888888776778************************************************5665.*********** PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                 ++ t+ftftl 
  EHU02221.1 412 HQETCFTFTLA 422
                 ********986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       9.5   1.4e+04      16      27 ..     164     175 ..     163     186 .. 0.78
   2 !   65.0   0.9   3.1e-21   4.7e-18       2      66 ..     204     268 ..     203     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.5
                 HHHHHHHHHHHH CS
       HisKA  16 PLsailgnaeaL 27 
                 PL+ +l n + +
  EHU02221.1 164 PLTLVLNNQHHM 175
                 999999987765 PP

  == domain 2  score: 65.0 bits;  conditional E-value: 3.1e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC....T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre..gklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ f+a+v+HELrtPL++++g++e++ ++  +    +  ++l+t+ +++rr+d+lv++lL+lsriea
  EHU02221.1 204 RRNFFANVSHELRTPLTVLQGYLEMMNDSvmN--QRSRDKALHTMSEQTRRMDSLVKQLLTLSRIEA 268
                 899***********************998432..3455559************************98 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   9.1e-11   1.4e-07       2      57 ..      99     160 ..      98     194 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 9.1e-11
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH......H CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda......e 57 
                 ++r+  eslpd+++++ e g i+++N  a++ lGl++ e  g+++l l+  ++ +      +
  EHU02221.1  99 RFRSGAESLPDAVILTTEEGTIFWCNGLAQQHLGLRWPEDNGQNILNLLRYPEFSrylrqrD 160
                 678889*******************************************7765444433333 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.8e-09   5.6e-06       4     110 ..     319     428 ..     316     438 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.8e-09
  HATPase_c_3   4 ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelkn.alrlatsskeakrkstslGkkGiGl...klAslslgkkltvitkke 95 
                  ++A+  lv N++    d+++++i++ + + + + +++ D+G G++ e + +   r+ + +k     s+ +G  G+Gl   k A  +  ++l++++   
   EHU02221.1 319 RSAISNLVYNAVNhtPDSTRIDISWLRSK-QGAVFKVCDNGPGIPAEHIPRlTERFYRVDKA---RSRATGGSGLGLaivKHALSHHNARLEITSIPH 412
                  789********987799*********986.79*******************55589999999...589999999997556888889999999999977 PP

  HATPase_c_3  96 gess.tltldvdkidk 110
                  +e++ t+tl  + i +
   EHU02221.1 413 QETCfTFTLAPRLIVS 428
                  6666577777666655 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.7e-08     4e-05      32     109 ..     318     398 ..     304     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.7e-08
  HATPase_c_2  32 irlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglv 109
                  +r a++ +++Nav+h  +   + ++ +++ ++++  +++v D+Gpg ++e++p+ te  +      +     +G+Gla++k+  
   EHU02221.1 318 LRSAISNLVYNAVNHTPD---STRIDISWLRSKQGAVFKVCDNGPGIPAEHIPRLTERFYrvdkarSRATGGSGLGLAIVKHAL 398
                  667777788888888776...588*************************9999887655599998888899999*****99865 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.8e-07   0.00057       2      57 ..      99     152 ..      98     165 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.8e-07
       PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGys.adlkgellgqllpvlrplle 57 
                 r+r+  es+pd+++++  +g+ i ++N  a++ lG++ +++ g   +++l+ lr+++ 
  EHU02221.1  99 RFRSGAESLPDAVILTTeEGT-IFWCNGLAQQHLGLRwPEDNG---QNILNLLRYPEF 152
                 6666679*******9886777.***************555555...555555555544 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.8e-05     0.042       2     109 ..     105     198 ..     104     199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
       PAS_4   2 dslpdalavldpdgrvlyaNaaaaelfgappeellGktlae.....llpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGev 95 
                 +slpda++   ++g++ ++N          ++++lG ++ e     +l+    ++++r+lr+     +p++ +        ++h+e+r++P   ++G+ 
  EHU02221.1 105 ESLPDAVILTTEEGTIFWCNGL--------AQQHLGLRWPEdngqnILNLLRYPEFSRYLRQRDFD-KPLTLVL-----NNQHHMEFRVMPY--SEGQ- 186
                 79*******************6........667888888843444466666888888888875555.3444444.....7999*********..6688. PP

       PAS_4  96 igvlvisrDiTerr 109
                   +l+++rD+T+ +
  EHU02221.1 187 --WLMVARDVTQMH 198
                 ..*********976 PP

>> DUF2955  Protein of unknown function (DUF2955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.4   7.6e-05      0.11      49      91 ..      10      52 ..       5      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.6e-05
     DUF2955 49 lllsvvltalevlllvellqhyPvlmtllvflllllkfrlmsr 91
                ll  +vl++l +l+l  l+++ P l++l v+++ll+ f+ ++r
  EHU02221.1 10 LLSELVLACLPALVLGLLFGYLPWLLLLSVVGILLWHFYNLMR 52
                677899*********************************9887 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00023      0.35      13      65 ..     219     267 ..     209     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
         HR1  13 lkireGAenllraleskktqnkkvrqeaeselsesnskielLreqLeelqasv 65 
                 l + +G   ++     ++  n+++r +a +++se  ++++ L +qL +l + +
  EHU02221.1 219 LTVLQGYLEMMN----DSVMNQRSRDKALHTMSEQTRRMDSLVKQLLTLSRIE 267
                 556666666666....4899**************************9998765 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025      0.37       1      50 [.     108     156 ..     108     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
       PAS_9   1 pdgilidnpdgrilyaNeaalrllGys.peevlgksitdlfvtdpeanerl 50 
                 pd++++++++g+i ++N  a + lG   pe+  g++i +l+   pe  + l
  EHU02221.1 108 PDAVILTTEEGTIFWCNGLAQQHLGLRwPED-NGQNILNLL-RYPEFSRYL 156
                 78999999*****************776998.********9.444444333 PP

>> DUF4391  Domain of unknown function (DUF4391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00021      0.32     122     240 ..     179     289 ..     168     290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
     DUF4391 122 leeefitewlpedeeslelekasdieaafldalalknlpktdlkalYqelidklialeaasltgefsleskediaerrerlaeieelekeiaklkk.kl 219
                 +  +   +wl+ +    ++++ + ++++f+++++ +  +  ++ + Y e+++  ++ +          + ++ ++   e+++++++l k++ +l++ ++
  EHU02221.1 179 VMPYSEGQWLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNDSVMNQR---------SRDKALHTMSEQTRRMDSLVKQLLTLSRiEA 268
                 555666789999999999*****************************************.........5788899999999999999999999977469 PP

     DUF4391 220 kkekqfnrkvelnaelkklek 240
                 +  +++++kv++ + lk l++
  EHU02221.1 269 APVINMKEKVDVPVMLKLLQH 289
                 999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3448.68
//
Query:       EHU02222.1  [L=229]
Description: DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-28   98.1   0.0    4.8e-28   97.6   0.0    1.3  1  Response_reg  Response regulator receiver domain
    4.7e-28   97.1   0.1    9.2e-28   96.1   0.1    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.11   11.5   0.0       0.15   11.0   0.0    1.2  1  Peripla_BP_5  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0     8e-32   4.8e-28       1     112 []       5     117 ..       5     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 8e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   +l+v+D+  +re l  +le+++y +  eaed ++a+ +l e ++dlillD+++pg +G++++k++++e   +++pv++lta++eeed+v+++++gad
    EHU02222.1   5 ILVVEDEAPIREMLCFVLEQNDY-QPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGSGIQFIKHLKREAmtRDIPVMMLTARGEEEDRVRGMEVGAD 100
                   8**********************.6667*************************************99998899************************ PP

                   EEEESSG-HHHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkale 112
                   d+++Kpf+p+eL+++++
    EHU02222.1 101 DYITKPFSPKELMARIK 117
                   *************9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.1   1.5e-31   9.2e-28       2      77 .]     151     225 ..     150     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1.5e-31
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +++e+ p+e+klL++++ +p+rv+sre+Ll++vwg + +v+drtvdvhi+rLRk Le ++++ r+++tvrg GYr+
   EHU02222.1 151 TPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALELTGHD-RMVQTVRGTGYRF 225
                  57899*****************************************************8855.5**********97 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.5e-05      0.15     168     233 ..      25      92 ..      17     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.5e-05
  Peripla_BP_5 168 eeYlplgssdvqkivakikkakpdvvlst..inGdsnvafykelkeagikaekipvvslsv.aeeelaa 233
                   ++Y p++++d+++ v+k+ +  pd++l    + G s ++f k+lk++ ++ ++ipv+ l+  +eee + 
    EHU02222.1  25 NDYQPIEAEDYDSAVSKLIEPWPDLILLDwmLPGGSGIQFIKHLKREAMT-RDIPVMMLTArGEEEDRV 92 
                   68**********************998643389************99987.579999887635555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1870.57
//
Query:       EHU02223.1  [L=398]
Description: exonuclease, dsDNA, ATP-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-25   88.7   1.9    4.9e-25   87.7   1.9    1.6  1  SbcD_C         Type 5 capsule protein repressor C-terminal do
    9.3e-14   52.4   0.0    3.1e-13   50.7   0.0    1.8  2  Metallophos    Calcineurin-like phosphoesterase
    5.6e-09   36.4   0.0      1e-07   32.3   0.0    2.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   1.9   8.2e-29   4.9e-25       2      93 ..     275     371 ..     274     373 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 8.2e-29
      SbcD_C   2 frpLrrlkgdleeila......leepsekpawlevevtdedplpdlrerlrellegipvevlrlrrtrekasaeleqeaeetlaelspeevFerflae 93 
                 f+p+++lkg+l++i+       +  +  kp+wl++evt++++l+dl++++++l++ +pv vl lrr re+++ +l+q ++etl+el++eevF+r+la+
  EHU02223.1 275 FQPMQVLKGSLAQITRqlsqfsA-PDGTKPVWLDIEVTTQEYLSDLQRQVEALTASLPVDVLLLRRSREQRQHSLAQLDKETLSELNVEEVFARRLAL 371
                 9****************998651.45789*******************************************************************96 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   5.1e-17   3.1e-13       1      86 [.       1      92 [.       1     139 [. 0.84
   2 ?   -1.0   0.0      0.35   2.1e+03     193     203 ..     215     225 ..     172     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 5.1e-17
                 EEEEEEESBTB......TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH....TSEEEEEC-TTSCHHHHHHHHHH CS
  Metallophos  1 lrilvigDlHl......algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvky....pipvylllGNHegfeeellnkyg 86
                 +ri++++D+Hl      +++ + ++++l++l   ++e+++d++++aGDl+d+g ++++  e+++++v      + ++++l+GNH+    ++  +++
   EHU02223.1  1 MRIIHTADWHLgqffynKSRAAEHQAFLDWLLARIEEHQVDALIVAGDLFDTGTPPSYAREMFNRFVVAlqpsGCQLVVLAGNHD----SVATLNE 92
                 89************999888899999999996668889***************88886777788888888999************....4444433 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.35
                  ESEEEEESSSS CS
  Metallophos 193 vdlvisGHtHv 203
                  +d++  GH+H+
   EHU02223.1 215 ADYIALGHIHR 225
                  79999*****6 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.8e-11     1e-07       1     131 [.       1     227 [.       1     261 [. 0.66

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.8e-11
  Metallophos_2   1 MklaiiSDlH............snldaleavlealkevgvdaiihaGDl..eeeepevleellela.........pvlaVrGNnD........... 62 
                    M++++ +D H            ++ + l+ +l++++e++vda+i+aGDl   ++ p+  +e+++++         ++++  GN+D           
     EHU02223.1   1 MRIIHTADWHlgqffynksraaEHQAFLDWLLARIEEHQVDALIVAGDLfdTGTPPSYAREMFNRFvvalqpsgcQLVVLAGNHDsvatlnesrel 96 
                    9***************998887777788888*****************99555555555555555556669999***********88888888888 PP

  Metallophos_2  63 ...................................................eev.veedvlreaaelgtdlpeeaelelagekvlliHgdpl.... 102
                                                                       +++  ++ + +  a++++++ +++ l+la   v+  H + l    
     EHU02223.1  97 laclntrvittpqdgndvlmlttrqgepgallcaipylrprdimrsqagqsGRDkQRSLLEAITAHYQRSFAAAQALNLALPIVATGHLTALgvsk 192
                    888888888888888888888888888888888877777665555555544222244444444444455555555555544334444444334433 PP

  Metallophos_2 103 .........gvkdalaellkeaeegsdvvvcGHtHvpe 131
                             g    l++   +a  ++d++++GH+H+++
     EHU02223.1 193 sdsvrdiyiG---TLDAFPASAFPPADYIALGHIHRAQ 227
                    3334542222...2333333355577788888888873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3448.08
//
Query:       EHU02224.1  [L=1224]
Description: SbcC family exonuclease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-15   57.1  14.5      5e-15   55.5   0.7    4.6  3  SbcCD_C       Putative exonuclease SbcCD, C subunit
    2.3e-08   34.8  53.9    2.3e-08   34.8  53.9    8.8  3  AAA_23        AAA domain
    1.3e-07   31.3   6.0      0.001   18.5   5.1    3.0  2  SMC_N         RecF/RecN/SMC N terminal domain
    1.2e-06   28.2   0.0    4.7e-06   26.3   0.0    2.0  2  AAA_29        P-loop containing region of AAA domain
     0.0011   19.4   7.7     0.0011   19.4   7.7   12.0 12  FadA          Adhesion protein FadA
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.032   14.0   0.0    1.8  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.016   15.1   0.1      0.083   12.8   0.0    2.3  2  NTPase_1      NTPase
       0.12   12.5   0.7        2.1    8.4   0.0    3.6  3  MMR_HSR1      50S ribosome-binding GTPase
       0.18   11.4   3.0       0.31   10.6   0.1    2.8  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.45   10.8   0.0       0.45   10.8   0.0    6.1  7  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.8    0.0062        11      22      58 ..     217     253 ..     197     269 .. 0.82
   2 ?    1.4   0.7      0.21   3.8e+02       5      71 ..     895     957 ..     891     964 .. 0.68
   3 !   55.5   0.7   2.8e-18     5e-15       6      89 ..    1104    1180 ..    1099    1181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0062
     SbcCD_C  22 kekelsrssgtlSGGekqflaylalaaalaalyssae 58 
                 +++ l+++ ++lS  e+q++a+la+a a  ++ ++++
  EHU02224.1 217 TRTALHQQKKALSDAEHQLTAALAVAQAQQQWQQQHQ 253
                 456699******************9998888877765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.21
     SbcCD_C   5 dyRny.lsfevevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDE 71 
                 + Rn  ++ ++ev + +g+ + l+++ ++lSG  ++    +  a+a+a   ++     ++lr  +LDE
  EHU02224.1 895 QQRNAlHQSQAEVSRLNGQLTLLESQLQSLSGRVTEAEQRFSAALAAAEFADE-----THLRAALLDE 957
                 55665233455555888888889999999999766655555555555555555.....5789999998 PP

  == domain 3  score: 55.5 bits;  conditional E-value: 2.8e-18
     SbcCD_C    6 yRnylsfevevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89  
                   R    +e++v+  d ++ +  r+++tlSGGe+ fl++lala+al++l+s+    +++++++fLDE+F++lD+e+++t+l++l+
  EHU02224.1 1104 RRASDVLELDVV--DTWQADSARDTRTLSGGES-FLVSLALALALSDLVSH----KTRIESLFLDEGFGTLDAETLDTALDALD 1180
                  555556677777..77888899***********.*****************....79************************986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8  53.9   1.3e-11   2.3e-08       2     154 ..       6     251 ..       5     596 .. 0.81
   2 ?  -52.3  72.3        10   1.8e+04     105     193 ..     712     860 ..     623     974 .. 0.65
   3 ?   -7.9  19.6        10   1.8e+04     100     185 ..     938    1048 ..     868    1059 .. 0.63

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.3e-11
      AAA_23   2 Lkienfrsf.rdqeidF......skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkay.veltfenkdgrytrsier 92 
                 L+ +n++ + +++ idF      s+gl++ItG +GaGKTT+ldAi+laLy++tprl++ s+    ++        + +++ +e++fe k++    +  +
  EHU02224.1   6 LRFKNLNALkGEWFIDFrtepfaSNGLFAITGATGAGKTTLLDAICLALYHQTPRLGGISQ---GHNPLMTR---DCAEClAEVEFEIKGEA--WRAFW 96 
                 899******66799******************************************99764...45555532...33445589999888886..47789 PP

      AAA_23  93 erelskkkgkttkkaklellei...........deleqfisellgskkiilnlilflgqerfeefelkdkke........................... 153
                 +++++++ ++ + +a + +l             +++ +++++l g ++++++++ +l q++f+ f++++ +e                           
  EHU02224.1  97 SQNRARGTADGKLQAPRVELARcadnqivadkvSDKLKLTETLSGLDFARFTRSMMLSQGQFAAFLNAKANEraelleeltgteiygrlsmavferhka 195
                 9999999999998886666666333322222555555556668888888******************98888777888888888888888888888888 PP

      AAA_23 154 .......................................................r 154
                                                                        +
  EHU02224.1 196 aktalellrsraggmalldeatrtalhqqkkalsdaehqltaalavaqaqqqwqqQ 251
                 88878888777777777777766655555553333333333322222222222220 PP

  == domain 2  score: -52.3 bits;  conditional E-value: 10
      AAA_23 105 kkaklellei...deleqfisellgskki.............ilnlilflgqerfeefelkdkke.................................. 153
                 + ++le+ e    ++++  ++++ + ++              + + ++ l+q++ +  e+ +++e                                  
  EHU02224.1 712 RLDALEQAERavlAATDHHLRQHQTLQQHqqtllltqqqlesQHQALQALQQQQRQAAENGQQLEaalaqqfsdvalslpertardswlanqqerwqrw 810
                 333333333333333333333333333330000000001222334444444444333333333336666666677777777777777777777777777 PP

      AAA_23 154 .....rleelekeleeledekkllekl.....eqekekekeleeleeele 193
                       l++l+ +l  +e++++ l+++     +++ +++++l++l+++  
  EHU02224.1 811 qeserLLANLQPQLARAETQADALQQQlqleqQRLDQQRQQLTALQQQAH 860
                 77777555555555555555555555533222222333444444444444 PP

  == domain 3  score: -7.9 bits;  conditional E-value: 10
      AAA_23  100 kgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefel...kdkke..............rleelekeleeledekkllekl.... 175 
                        +a++  l+ + l+++  ++l ++ +++++  +++q r +e+++   +++++              +l+ l+++l+e+ +++ +++++    
  EHU02224.1  938 ALAAAEFADETHLRAALLDEQAAQQLRQQLQQIDQHRLHQQARLAELQQrlaAHQQQkpalmpdspyvlaaELARLQQSLRENANQQGQVQQQldsd 1034
                  3444455666666667777788888888888888888899988555555565333335788888899988888888888888888887777775555 PP

      AAA_23  176 ....eqekekekel 185 
                      +q++   +++
  EHU02224.1 1035 aslrNQQQTLLARI 1048
                  44443333333333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00015      0.27      22      48 ..      28      54 ..       9      63 .. 0.82
   2 !   18.5   5.1   5.8e-07     0.001     135     213 ..     829    1210 ..     145    1214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                TTSSEEEEEESTTSSHHHHHHHHHHHC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 22 fsksftaivGpNGSGKsnlldAilFvL 48
                 s+++ ai+G+ G+GK+ lldAi+  L
  EHU02224.1 28 ASNGLFAITGATGAGKTTLLDAICLAL 54
                4667889****************7666 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 5.8e-07
                  T................................................................................................ CS
                  x................................................................................................ RF
       SMC_N  135 e................................................................................................ 135 
                  +                                                                                                
  EHU02224.1  829 Tqadalqqqlqleqqrldqqrqqltalqqqahekqqqrqalfgdrdvaqarqqmqvlvdqheaqltqqrnalhqsqaevsrlngqltllesqlqsls 925 
                  0444444444444444444444444444444444444444444444444444444444444444445555555555555588888888888888999 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EHU02224.1  926 grvteaeqrfsaalaaaefadethlraalldeqaaqqlrqqlqqidqhrlhqqarlaelqqrlaahqqqkpalmpdspyvlaaelarlqqslrenan 1022
                  9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EHU02224.1 1023 qqgqvqqqldsdaslrnqqqtllariaqdetalaqwtllndligsatgdkfrrfaqgltldhlvalanrqldrlhgryllqrrasdvleldvvdtwq 1119
                  99999999999999999******************************************************************************** PP

                  ........CS-HHHHHHHHHHHHHH.....HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEE.EE-SSHHHCCC-SCEEEEEE CS
                  ........xxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ........lLSgGektLvalaLlfA.....iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfi.vislreemlekadklvgvtk 213 
                          +LSgGe  Lv+laL +A      +k + ++l +lDe    LD++      + l++ + +   i vis+ e m e+    ++v+k
  EHU02224.1 1120 adsardtrTLSGGESFLVSLALALAlsdlvSHKTRIESL-FLDEGFGTLDAETLDTALDALDALNASGKTIgVISHVEAMKERIPVQIKVRK 1210
                  *************************88885566666666.58********************99988776669*****99999988888877 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.6e-09   4.7e-06      15      49 ..      23      57 ..      17      61 .. 0.85
   2 ?   -3.3   0.0       4.5     8e+03      19      30 ..     347     358 ..     339     358 .. 0.60

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.6e-09
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                +t ++  +g + +tG++G+GK+TllDAi   L+ +
  EHU02224.1 23 RTEPFASNGLFAITGATGAGKTTLLDAICLALYHQ 57
                666888899*******************9999866 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.5
      AAA_29  19 idlkgatlltGp 30 
                  ++++ tlltG+
  EHU02224.1 347 QQQQQETLLTGQ 358
                 333337****96 PP

>> FadA  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   5.7        10   1.8e+04      32      52 ..     240     260 ..     213     285 .. 0.52
   2 ?   -3.1   6.9       6.2   1.1e+04      15      56 ..     311     352 ..     300     355 .. 0.79
   3 !   19.4   7.7   6.2e-07    0.0011       2      90 ..     366     460 ..     365     464 .. 0.84
   4 ?   -6.4  12.7        10   1.8e+04       3      86 ..     467     552 ..     465     561 .. 0.66
   5 ?   -2.3   4.1       3.7   6.6e+03      19      37 ..     540     564 ..     524     597 .. 0.48
   6 ?   -0.8   5.1       1.3   2.3e+03      39      91 ..     625     671 ..     614     683 .. 0.47
   7 ?   -7.8  15.3        10   1.8e+04      18      52 ..     742     776 ..     705     786 .. 0.61
   8 ?   -5.9  22.5        10   1.8e+04       8      86 ..     830     911 ..     817     919 .. 0.68
   9 ?    2.3   4.1      0.14   2.4e+02       6      52 ..     879     925 ..     874     936 .. 0.85
  10 ?   -2.6   6.8       4.3   7.8e+03       2      57 ..     914     973 ..     913     985 .. 0.70
  11 ?   -8.6  13.2        10   1.8e+04      18      54 ..     958     994 ..     948    1033 .. 0.65
  12 ?   -1.3   1.5       1.8   3.2e+03      25      50 ..    1008    1033 ..    1004    1042 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 10
        FadA  32 aklakkkelkakieeklakle 52 
                 a  +++++ +++ ++ +a+ e
  EHU02224.1 240 AVAQAQQQWQQQHQQAIADTE 260
                 323333333333333222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.2
        FadA  15 keeqrykkekakaeaaaaklakkkelkakieeklakleadse 56 
                 + +q+++++  +a +a   l+++++  ++  e+ ++ ++++e
  EHU02224.1 311 ERQQQLSQQMHTATQAHHVLQQRYAETDTAHEQCRQQQQQQE 352
                 446679999999999999999999999999999998766666 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 6.2e-07
        FadA   2 lnaLeaelqkLekkeeqr...ykkekakaeaaaak...lakkkelkakieeklaklea.dsevrfykdeYkellkeyksllkelekeikekekkia 90 
                 l+aL + +q+L++  e +    ++++a++ ++a++   l++  +++ +++e+la++ +  +   ++k+ + +l  +y++ ++el+++i+++++ i 
  EHU02224.1 366 LSALYEHIQQLQQDAERQqqhCAQREAALHSEARQvrhLQETIAQQHALREQLADMPQwGEHLPIWKERFAQL-TRYEATQAELDQQIQQQQRHIH 460
                 78999999***997655557799999999988776222566777999***********9999*********96.79*****************997 PP

  == domain 4  score: -6.4 bits;  conditional E-value: 10
        FadA   3 naLeaelqkLekkeeqrykkekakaeaaaaklakk...kelkakieeklakleadsevrfykdeYkellkeyksllkelekeikeke 86 
                 ++L ++l+ L ++ +q+ ++   +ae+a  +l++    ++l++++++  ++ ea     +   +++ l ++ +++ k+l +  + ++
  EHU02224.1 467 EQLAQQLTPLDQAAQQA-QQSLSQAEQALTSLQNAhppEALRQALSQHQQQREARHALTIVAAQWQPLHQQRTQYEKRLHELETAQQ 552
                 57888888888876555.444455666666665542226777777777777777777778888888888888877777775444444 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 3.7
        FadA  19 r......ykkekakaeaaaaklakk 37 
                        ++  +++ae+a  +l + 
  EHU02224.1 540 YekrlheLETAQQQAESALLTLREA 564
                 2333444555556666665555543 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 1.3
        FadA  39 elkakieeklakleadsevrfykdeYkellkeyksllkelekeikekekkian 91 
                 + ka+++++++     se+   k   ke +k++++ +++l +ei+  ++++++
  EHU02224.1 625 QRKAELQKQVDA---LSETGTAK---KEQIKQLQAQQQSLREEITGLTQQLDD 671
                 333333333333...22222222...234444444444444444444444444 PP

  == domain 7  score: -7.8 bits;  conditional E-value: 10
        FadA  18 qrykkekakaeaaaaklakkkelkakieeklakle 52 
                 q++   ++++e++ + l++ ++++ +  e  ++le
  EHU02224.1 742 QTLLLTQQQLESQHQALQALQQQQRQAAENGQQLE 776
                 33444445555555555555555555444444444 PP

  == domain 8  score: -5.9 bits;  conditional E-value: 10
        FadA   8 elqkLekk...eeqrykkekakaeaaaaklakkkelkakieeklakleadsevrfykdeYkellkeyksllkelekeikeke 86 
                 ++++L+++   e+qr+ ++++++ a +++  +k+++++++    ++++a +++++  d+ +  l + +++l + ++e+++ +
  EHU02224.1 830 QADALQQQlqlEQQRLDQQRQQLTALQQQAHEKQQQRQALFGDRDVAQARQQMQVLVDQHEAQLTQQRNALHQSQAEVSRLN 911
                 4445543322288888888888888888888888888888877777777777777777777777777777776666666554 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.14
        FadA   6 eaelqkLekkeeqrykkekakaeaaaaklakkkelkakieeklakle 52 
                  +++q L+ + e+++ ++++++ + +a++   + + + +e +l+ l 
  EHU02224.1 879 RQQMQVLVDQHEAQLTQQRNALHQSQAEVSRLNGQLTLLESQLQSLS 925
                 589*******************9999999998888888888887765 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 4.3
        FadA   2 lnaLeaelqkL...ekkeeqrykkekakaeaaaaklakkkelkakieeklak.leadsev 57 
                 l  Le++lq L   +++ eqr++   a+ae a ++      l ++  ++l++ l++  + 
  EHU02224.1 914 LTLLESQLQSLsgrVTEAEQRFSAALAAAEFADETHLRAALLDEQAAQQLRQqLQQIDQH 973
                 566999999994444677888********9999887777777766666665413334444 PP

  == domain 11  score: -8.6 bits;  conditional E-value: 10
        FadA  18 qrykkekakaeaaaaklakkkelkakieeklaklead 54 
                 q+ ++ ++++++  +    +++  a+++++la  +++
  EHU02224.1 958 QAAQQLRQQLQQIDQHRLHQQARLAELQQRLAAHQQQ 994
                 5555566666665555555666666666666663332 PP

  == domain 12  score: -1.3 bits;  conditional E-value: 1.8
        FadA   25 akaeaaaaklakkkelkakieeklak 50  
                  a++ + +++l ++ +++ +++++l+ 
  EHU02224.1 1008 AELARLQQSLRENANQQGQVQQQLDS 1033
                  55667788999999999999998876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.032       2      32 ..      33      60 ..      32      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegl 32
                 +++G+ g+GK++LLda+ l+   + +++++
  EHU02224.1 33 FAITGATGAGKTTLLDAICLA---LYHQTPR 60
                68****************444...5555555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.6e-05     0.083       2      33 ..      33      64 ..      32      69 .. 0.91
   2 ?   -2.0   0.0       1.7     3e+03      42     116 ..     515     590 ..     510     601 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-05
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGf 33
                ++iTG  G GKtTl++ ++ +l ++  ++gG+
  EHU02224.1 33 FAITGATGAGKTTLLDAICLALYHQTPRLGGI 64
                58********************9999999987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                 ----EEEEEET.T--EEEEEETT---SSEETTEEE-HHHHHHHHHHHHHHHH..HHH-EEEE---STTGGG-HHHHH CS
    NTPase_1  42 grrigFkivdlasgeegiLarveakreprvgkyvvdvesfeelalealrkal..seadviviDEiGkmElkskkfke 116
                 ++r + +  ++   + ++L +++++ e r+ +     +++e+ al  lr+a   +++++  +  i ++E +++ +++
  EHU02224.1 515 QQREARHALTIVAAQWQPLHQQRTQYEKRLHELETAQQQAES-ALLTLREAWrrEKQQLSDVEKICQLESQIADLEQ 590
                 455555666666668889999999999999999999777777.5666777765566778888888888888877665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0012       2.1       3      21 ..      34      52 ..      32      87 .. 0.75
   2 ?   -1.9   0.1         2   3.5e+03      63     100 ..     503     543 ..     459     563 .. 0.63
   3 ?   -2.5   0.1       2.9   5.2e+03      60      86 ..     703     730 ..     642     763 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                ai G + +GK+tL+ a++ 
  EHU02224.1 34 AITGATGAGKTTLLDAICL 52
                89***************95 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 HHHHHHHHHHHHC...TSEEEEEEETT.....TTCSHHHHHHHHHH CS
    MMR_HSR1  63 ekglgkaflalee...adlillvvdas.....eeklkpldeeleel 100
                  + l++a+ ++++   a ++l +v a+     +     ++ + e+ 
  EHU02224.1 503 PEALRQALSQHQQqreARHALTIVAAQwqplhQ-----QRTQYEKR 543
                 445555555544333377777777755444331.....32222222 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHCT.SEEEEEEETT CS
    MMR_HSR1  60 aseekglgkaflaleea.dlillvvdas 86 
                 ++ e+ l+ ++ ale+a  ++l   d +
  EHU02224.1 703 NRHEQTLTARLDALEQAeRAVLAATDHH 730
                 2233355555555666535555555633 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00017      0.31       4      21 ..      34      51 ..      32      61 .. 0.83
   2 ?   -1.4   0.6      0.81   1.5e+03      81     162 ..     653     740 ..     625     755 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
                EEEESTTCCHHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhll 21
                 +tG  G+GKTtLl +++
  EHU02224.1 34 AITGATGAGKTTLLDAIC 51
                69*************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.81
                 TT-SEEEEEECTTTTHHHH.HTTSHHHHHCCCECEEEEEEETTTH.....CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHH CS
        cobW  81 erldviliEttGlaePapv.afteeelksdltldavvavvDaknl....eaeeekieekaedqlaaadllvlnKtDlldee.allekl 162
                 ++ + +  E tGl +       +++el+s+l l++ ++  Da+ +    ++++e++ +   d l+ a+  vl  tD    + ++l++ 
  EHU02224.1 653 AQQQSLREEITGLTQQLDDlSQQWQELSSELALTFPLTDTDARIAwqqaQNRHEQTLTARLDALEQAERAVLAATDHHLRQhQTLQQH 740
                 5556666677886665555255599999999999999999995547765555566666667889999999999998765553444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025      0.45       5      28 ..      30      53 ..      27      98 .. 0.80
   2 ?   -3.0   0.0       4.5     8e+03      82     109 ..     199     228 ..     180     249 .. 0.69
   3 ?   -2.9   2.0       4.2   7.5e+03      24      68 ..     333     380 ..     301     418 .. 0.53
   4 ?   -2.8   2.8       3.9     7e+03      43      89 ..     469     513 ..     435     562 .. 0.56
   5 ?   -6.5   7.7        10   1.8e+04      54      91 ..     828     864 ..     707     904 .. 0.70
   6 ?   -1.6   0.3       1.7   3.1e+03      72      84 ..     957     969 ..     881    1000 .. 0.57
   7 ?   -0.7   0.2      0.88   1.6e+03      37      90 ..    1029    1097 ..     980    1117 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
      AAA_22  5 agilvvtGesGtGKTtllrrlleq 28
                 g+ ++tG +G+GKTtll  +   
  EHU02224.1 30 NGLFAITGATGAGKTTLLDAICLA 53
                67899************9887655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.5
      AAA_22  82 leqalraravielliiDEaqhlr...seeal 109
                   + lr+ra  ++ ++DEa +     +++al
  EHU02224.1 199 ALELLRSRAG-GMALLDEATRTAlhqQKKAL 228
                 4566777777.77778887664333324444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.2
      AAA_22  24 rlleqldeeakaee..erpevv..fvtlpsstsskdllrellralglel 68 
                 r++e+++++++ ++  ++ e++     +p + s++ l++++ +  ++ +
  EHU02224.1 333 RYAETDTAHEQCRQqqQQQETLltGQVIPLDQSLSALYEHIQQLQQD-A 380
                 44444444444333442333333222222333555555555444443.2 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.9
      AAA_22  43 vfvtlpsstsskdllrellralglelkaerlsseellealeqalrar 89 
                 +  +l+ +   ++ +++ l++ ++ l +  l++ +  eal+qal+++
  EHU02224.1 469 LAQQLTPLDQAAQQAQQSLSQAEQALTS--LQNAHPPEALRQALSQH 513
                 3333333333333333333333333333..33333333333333333 PP

  == domain 5  score: -6.5 bits;  conditional E-value: 10
      AAA_22  54 kdllrellralglelkaerlsseellealeqalrarav 91 
                 ++ + +l ++l+le+ +  +++++ l+al+q++++++ 
  EHU02224.1 828 ETQADALQQQLQLEQQR-LDQQRQQLTALQQQAHEKQQ 864
                 22344555555555555.44444444555555554444 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 1.7
      AAA_22  72 rlsseellealeq 84 
                 ++  ++l+++l+q
  EHU02224.1 957 EQAAQQLRQQLQQ 969
                 2222222222222 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.88
      AAA_22   37 e.........erpevvfvtlpsst....sskdllrellralglelka......erlsseellealeqalrara 90  
                  +         ++ ++++  +++++     ++ l   + +a+g    +      ++l++++l+++ +++l++ +
  EHU02224.1 1029 QqldsdaslrNQQQTLLARIAQDEtalaQWTLLNDLIGSATG----DkfrrfaQGLTLDHLVALANRQLDRLH 1097
                  123344444444444444444444122244444444444444....234457777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3953  (0.220481); expected 358.6 (0.02)
Passed bias filter:                      726  (0.0404931); expected 358.6 (0.02)
Passed Vit filter:                       299  (0.0166769); expected 17.9 (0.001)
Passed Fwd filter:                       137  (0.00764125); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 3.89u 0.41s 00:00:04.30 Elapsed: 00:00:00.79
# Mc/sec: 4695.71
//
Query:       EHU02225.1  [L=121]
Description: hypothetical protein CKS_5048 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-08   34.9   0.0    1.7e-08   34.5   0.0    1.1  1  TolA      TolA C-terminal
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.032   14.5   0.0    1.1  1  TonB_2    TonB C terminal
      0.085   13.4   4.1       0.16   12.5   4.1    1.5  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> TolA  TolA C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.9e-12   1.7e-08       6      82 ..      34     109 ..      30     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.9e-12
                 -TTCCHHHHHHHHHHHHHHHTTTTTGGGGTT--EEEEEEEETTSEEEEEEEEEE-HHHHHHHHHH.HCTS-----SS CS
        TolA   6 sgavgaevdkYaavikkaiqsrllkedsfkgktCrvkikLapdGtllsvkkegGdpalCqAalaAvakvakiPkpps 82 
                  ++  ++vd+Y a+++  + +++ +++ + g+ C v  +   dG   +v +++G+++lC  a + v  +  +P pp+
  EHU02225.1  34 TQTQCQTVDHYIAQVNAVVMRNFHHAQRYTGQRCLVTAQRRADGR-YNVMRTEGNESLCLSAWQSVSSARDMPLPPQ 109
                 5677899*************************************9.5778889**********************97 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.3e-06     0.032       2      82 ..      42     116 ..      41     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.3e-06
      TonB_2   2 deYaakvrarikenwafpsqisgnleavveitidpdGeivsvrlvksSgneafDkavkrAiekasplPpppekggapteik 82 
                 d Y+a+v a +++n+   +q   ++++ v+ + + dG+   +++ ++ gne +  ++ + ++ a+ +P pp  +gap+   
  EHU02225.1  42 DHYIAQVNAVVMRNFHH-AQRYTGQRCLVTAQRRADGR---YNVMRTEGNESLCLSAWQSVSSARDMPLPP--QGAPRQWV 116
                 78************954.455*****************...8**************************999..55555444 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.1   2.7e-05      0.16       6      18 .]       7      19 ..       7      19 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
      LPAM_1  6 lalgalllLsGCs 18
                ++++alllL+GCs
  EHU02225.1  7 IFAVALLLLAGCS 19
                59**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1039.90
//
Query:       EHU02226.1  [L=301]
Description: manno(fructo)kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-84  283.0   0.0    3.3e-84  282.8   0.0    1.0  1  ROK             ROK family
    1.2e-10   40.9   0.2    5.6e-10   38.7   0.2    1.9  2  Glucokinase     Glucokinase
    0.00036   20.3   0.1    0.00084   19.1   0.1    1.6  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
     0.0012   18.4   0.2       0.02   14.4   0.1    2.2  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.21   11.4   0.0    1.4  1  DEDD_Tnp_IS110  Transposase
        0.2   10.3   0.0        0.3    9.7   0.0    1.2  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.8   0.0   1.1e-87   3.3e-84       2     292 ..       3     300 ..       2     301 .] 0.98

  Alignments for each domain:
  == domain 1  score: 282.8 bits;  conditional E-value: 1.1e-87
                 EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHHHTS- CS
         ROK   2 igidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitw.enfdlvekleerlnvp 99 
                 igid+Ggtk++++ + +eg  l r++v+tp+++++ t+ +ai +lv  ae+k+++ ++vg+g+pG + + +++ v+++n+tw + ++l+++l+++ln+ 
  EHU02226.1   3 IGIDLGGTKTEVIALSSEGSELFRHRVSTPRNDYAATV-QAIVDLVRLAEEKTGQTGTVGLGIPGTL-SPYTQRVKNANSTWlNGQPLDKDLAHALNRD 99 
                 8************************************9.****************************.888889999********************** PP

                 EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-.........TTS-B-TTS-BSBHHHCCSHHHHHHCHT CS
         ROK 100 vevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqld.........pegekcgCGnqgClEtlasgralekraq 189
                 v+++nD+n++a++Eav+ga ++   v+ v++gtG GaGv+ing+ ++G nG+age+GH++l          + ++ c+CG qgC+Et++sg++++ ++q
  EHU02226.1 100 VRIANDANCLAVSEAVDGAGAGKPLVFGVIIGTGSGAGVAINGESRIGGNGNAGEWGHNPLPwmdedelryRAEVPCYCGLQGCIETFVSGTGFATDYQ 198
                 *********************************************************************9999999*********************** PP

                 C.CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHH CS
         ROK 190 q.kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllGa 287
                 + +g + +++ei++l  + d+vae ++ r++ +lak++a+++nl+dp++ivlgGg+s++d+l++++  l+kk++++++++++  +++a +gd++g++Ga
  EHU02226.1 199 RlSGVTRKGAEIVHLLAQQDPVAELAMSRYEMRLAKSLAQVVNLIDPDVIVLGGGMSNVDRLYQTVPTLMKKWVFGGECETP--VLKAVHGDSSGVRGA 295
                 *9999*****************************************************************************..9************** PP

                 HHHHC CS
         ROK 288 aaLak 292
                 a+L+ 
  EHU02226.1 296 AWLWP 300
                 ***97 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.2   1.9e-13   5.6e-10       4     231 ..       6     233 ..       3     243 .. 0.80
   2 ?    0.6   0.0     0.073   2.2e+02     166     203 ..     225     262 ..     220     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.9e-13
  Glucokinase   4 DiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpve..gdeveltNlpWviseeelakelgle...ave 96 
                  D+GGTk+ +  ++ e++e   ++  + + +dya   +a+ + ++ ae++  ++ ++ l++ g ++   ++v+ +N +W ++ + l k+l  +   +v+
   EHU02226.1   6 DLGGTKTEVIALSSEGSE-LFRHRVSTPRNDYAATVQAIVDLVRLAEEKTGQTGTVGLGIPGTLSpyTQRVKNANSTW-LNGQPLDKDLAHAlnrDVR 101
                  9*****************.677777888899999999999999988999999999*******9983356777799999.56677777776544469** PP

  Glucokinase  97 liNDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeevelleilrkkl.grvsaErvlSGp 193
                  + ND +++a++ ++ +        +g+ ++    +++G G G Gva+  +++ +    a+E Gh  ++ ++e e ++ + +      +  +E ++SG+
   EHU02226.1 102 IANDANCLAVSEAVDG--------AGAGKPLVFGVIIGTGSGAGVAINGESRIGGNGNAGEWGHNPLPWMDEDELRYRAEVPCYCgLQGCIETFVSGT 191
                  ****999998766554........45555667789**************9999999**********************9999998667899******* PP

  Glucokinase 194 GLvnlyealaaad..kleeel....lepaeiteaalegedplar 231
                  G ++ y+ l+  +  +  +e     ++++ ++e+a+++ +++ +
   EHU02226.1 192 GFATDYQRLSGVTrkG--AEIvhllAQQDPVAELAMSRYEMRLA 233
                  *******999988332..22223435555677777666555544 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.073
  Glucokinase 166 eseeevelleilrkklgrvsaErvlSGpGLvnlyeala 203
                  +s+ e++l++ l++ ++ +  + ++ G G++n+ +  +
   EHU02226.1 225 MSRYEMRLAKSLAQVVNLIDPDVIVLGGGMSNVDRLYQ 262
                  57789**************************9877655 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.8e-07   0.00084       1      56 [.       2      59 ..       2      69 .. 0.73
   2 ?   -2.6   0.0       1.3   3.7e+03     111     155 ..      69     111 ..      63     114 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.8e-07
  Hydant_A_N  1 rigIDvGGTfTDavaldekeeevavlKllst...pdavaegirealeevleesiprtsk 56
                rigID GGT T ++al+ +  e+  +++ +      a++++i+++++ ++e++++ t+ 
  EHU02226.1  2 RIGIDLGGTKTEVIALSSEGSELFRHRVSTPrndYAATVQAIVDLVRLAEEKTGQ-TGT 59
                79***************99889999999998444445556666666666665554.444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
  Hydant_A_N 111 vlyeevvevderveadgevlkpldeeevrealkalkaagvesiav 155
                  +y+++v+    + ++g+ l++   ++++++++ +++a  +++av
  EHU02226.1  69 SPYTQRVKNANSTWLNGQPLDKDLAHALNRDVRIANDA--NCLAV 111
                 56777777777777788888888888888888888877..55555 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   6.8e-06      0.02       1      54 [.       3      53 ..       3     196 .. 0.76
   2 ?    2.3   0.0     0.032        96     203     252 ..     230     280 ..     206     298 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.8e-06
                 EEEEE-SSEEEEEEEETTTE.EEEEEEE--TTS-HHH.........HHHHHHHHH CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekge.vlgrgitnsanlesvrfeaaekvleealtealer 54
                 +GiD+G+T+t ++ +  +g+ +    +++++n  ++     ++ +++ ++ a e+
   EHU02226.1  3 IGIDLGGTKTEVIALSSEGSeLFRHRVSTPRNDYAAT----VQAIVDLVRLAEEK 53
                 7************999998857777777777666554....34444444444444 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.032
                  HHHHHHHHHTT---SS..EEEESGGGG-HHHHHHH.....HHHH-S-EE-- CS
  BcrAD_BadFG 203 alrvialisrsggvtde.vtltGGvakneaavkelrklvkenygevkinin 252
                  ++++++l++ ++ ++++ ++l GG+++   +++++ +l k+ + + + +++
   EHU02226.1 230 MRLAKSLAQVVNLIDPDvIVLGGGMSNVDRLYQTVPTLMKKWVFGGECETP 280
                  334445555555554444899999999999999888888877766554443 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.1e-05      0.21       1      41 [.       3      43 ..       3      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
  DEDD_Tnp_IS110  1 vGiDvakdkhdacvidaegkvllservpndeegleallekl 41
                    +GiD + +k ++ ++++eg++l+++rv++ +++ +a ++++
      EHU02226.1  3 IGIDLGGTKTEVIALSSEGSELFRHRVSTPRNDYAATVQAI 43
                    7*************************999987776666652 PP

>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.9e-05       0.3     275     334 ..     200     257 ..     192     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.9e-05
  Acetate_kinase 275 lsglssDlrevedaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigen 334
                     lsg++    e+++  ++ d  aela+  y  rlak +++ ++ ++   D iv  gG+++ 
      EHU02226.1 200 LSGVTRKGAEIVHLLAQQDPVAELAMSRYEMRLAKSLAQVVNLID--PDVIVLGGGMSNV 257
                     577777777888999999************************996..8********9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2093.77
//
Query:       EHU02227.1  [L=303]
Description: DNA-binding protein, non-specific [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-129  430.7   0.7   3.2e-129  430.5   0.7    1.0  1  RdgC      Putative exonuclease, RdgC
  ------ inclusion threshold ------
       0.27   10.7   2.4       0.17   11.3   0.3    1.7  2  SRPRB     Signal recognition particle receptor beta subunit


Domain annotation for each model (and alignments):
>> RdgC  Putative exonuclease, RdgC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.5   0.7  3.6e-133  3.2e-129       1     298 []       2     300 ..       2     300 .. 1.00

  Alignments for each domain:
  == domain 1  score: 430.5 bits;  conditional E-value: 3.6e-133
        RdgC   1 mwFknlliYrltkelelsaeeLeeaLaeaafkpcgsqdmsslGWvsplgeeee.lvhavngqlllalkkeeklLPasVvkeeleekveeieeeegrkvg 98 
                 +wFkn+++Yrl++++ lsa+ +e++L++++f+pcgsqdms++GWvsp+g+ ++ l+h  ngq++++++keek+LP+ Vvk++le+k++++e+e++rk++
  EHU02227.1   2 LWFKNMMVYRLNRDIPLSADGMEKQLEAFTFSPCGSQDMSKTGWVSPMGNRSDaLTHMNNGQIVICARKEEKILPSPVVKQALEAKIDKLEAEQSRKLK 100
                 7************************************************************************************************** PP

        RdgC  99 rkekkelkeevveeLLPrAFsksrktaawidtengllvvdaaSakkaeevlslLrkslgslpvkplqteqspeaamteWlasgeapagftldeeceLks 197
                 ++ek++lk+ev+++LLPrAFs++++t++widt+n+l++vd aSakkae++l+lLrkslgslpv+pl++e+++e ++teW++sg++pagf l++e+eLk+
  EHU02227.1 101 KTEKDSLKDEVLHSLLPRAFSRFSQTFMWIDTVNNLIMVDCASAKKAEDTLALLRKSLGSLPVVPLTLESPIELTLTEWVRSGDLPAGFALMDEAELKA 199
                 *************************************************************************************************** PP

        RdgC 198 aeeekavvrckrqdlesdeirahleaGkvvtkLaLtwedrisfvLtedlslkrlkflDvlkeqadeiekedaaerfdadfaLmtgeLseliedLlealg 296
                 + e+++v+rck+qdl +dei++h+eaGk+vtkLaL+w++ri+fvL++d s+krlkf+D+l++q+d+i++ed a+rfdadf+Lmt+eL+ l+++L+ealg
  EHU02227.1 200 ILEDGGVIRCKKQDLVCDEIANHIEAGKLVTKLALDWQERIQFVLSDDGSVKRLKFSDTLRDQNDDIDREDFAQRFDADFILMTSELAALTSNLIEALG 298
                 *************************************************************************************************** PP

        RdgC 297 ge 298
                 ge
  EHU02227.1 299 GE 300
                 96 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   1.9e-05      0.17     110     163 ..      59     110 ..      53     124 .. 0.80
   2 ?   -2.9   0.1      0.42   3.8e+03     116     131 ..     206     221 ..     206     226 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.9e-05
                 TT---EEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH------T... CS
       SRPRB 110 kdavdiliACnKqelflakspklikdaLEkElnkiierrskalkeldeeedksa 163
                  ++ +i+i   K+e  l  +  ++k+aLE  ++k+   +s+ lk++++++ k  
  EHU02227.1  59 MNNGQIVICARKEEKIL--PSPVVKQALEAKIDKLEAEQSRKLKKTEKDSLKDE 110
                 56678888888888877..45689*********************977665444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.42
                 EEEEE-TTSTT---HH CS
       SRPRB 116 liACnKqelflakspk 131
                 +i C+Kq+l+    ++
  EHU02227.1 206 VIRCKKQDLVCDEIAN 221
                 588*****98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2409.30
//
Query:       EHU02228.1  [L=96]
Description: uncharacterized DUF1255 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-34  117.3   0.0    3.2e-34  117.2   0.0    1.0  1  Ppnp      Pyrimidine/purine nucleoside phosphorylase


Domain annotation for each model (and alignments):
>> Ppnp  Pyrimidine/purine nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   1.8e-38   3.2e-34       2      92 .]       3      93 ..       2      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.8e-38
                CEEEECCCTEEEEEEEETTSEEEEEEEE-SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEEEEE CS
        Ppnp  2 kanvyfdgkvksravefadgskktvGvmlpgeyeFgtsakEvmevvsGelevklpgeeewktykagesFevpanssFelkvkeataYlCsy 92
                ++ +yfdgkvks+++++a++ +++vGvm++gey+Fgt+++E m+vvsG+++v lpge+ewk ++ag+ F+vp++s+F+l+v e+ +YlC+y
  EHU02228.1  3 NVSEYFDGKVKSIGFDSASTGRASVGVMAEGEYTFGTAQPEEMTVVSGSMKVLLPGETEWKWFEAGSVFNVPGHSEFHLQVGEPSSYLCRY 93
                5789*************************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 822.19
//
Query:       EHU02229.1  [L=63]
Description: YaiA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  121.6   3.0    1.2e-35  121.4   3.0    1.0  1  YaiA      YaiA protein


Domain annotation for each model (and alignments):
>> YaiA  YaiA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   3.0   6.4e-40   1.2e-35       1      63 []       1      63 []       1      63 [] 0.99

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 6.4e-40
        YaiA  1 maskPPYPReakivtvekGtagktvtwYeLRaDhPkPdtLiseheteqealDaktRYeDedke 63
                m+s+PPYPRea++vtvekG+ gk vt ++LRaDhPkPd+Liseh++eqea Dak+RYeD++ke
  EHU02229.1  1 MPSRPPYPREARVVTVEKGPEGKKVTSWQLRADHPKPDSLISEHDSEQEAHDAKQRYEDVEKE 63
                9************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 540.23
//
Query:       EHU02230.1  [L=174]
Description: shikimate kinase III [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-44  151.7   0.0    1.9e-44  151.6   0.0    1.0  1  SKI              Shikimate kinase
    2.3e-08   34.6   0.0      7e-08   33.1   0.0    1.8  1  AAA_18           AAA domain
    0.00023   21.3   0.1     0.0014   18.8   0.1    2.0  2  Cytidylate_kin2  Cytidylate kinase-like family
    0.00025   21.4   1.0    0.00066   20.1   1.0    1.7  1  AAA_16           AAA ATPase domain
    0.00035   20.6   0.0    0.00062   19.8   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00044   20.4   0.9     0.0083   16.3   1.0    2.5  1  AAA_33           AAA domain
     0.0032   17.7   3.5     0.0053   17.0   1.7    2.3  1  AAA_28           AAA domain
     0.0044   17.5   0.0      0.011   16.2   0.0    1.7  2  AAA              ATPase family associated with various cellul
     0.0054   16.3   1.8       0.02   14.5   0.4    2.0  2  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.024   14.1   0.0    1.3  1  SMC_N            RecF/RecN/SMC N terminal domain
      0.023   14.7   0.0      0.047   13.7   0.0    1.6  1  AAA_14           AAA domain
      0.034   13.9   0.0      0.062   13.0   0.0    1.4  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.04   14.2   0.3      0.087   13.1   0.3    1.8  1  AAA_22           AAA domain
      0.051   13.3   1.9        4.6    6.9   0.1    2.6  2  AAA_30           AAA domain
      0.053   13.2   0.0       0.14   11.9   0.0    1.7  2  AAA_24           AAA domain
      0.055   14.0   0.0      0.068   13.7   0.0    1.2  1  AAA_23           AAA domain
      0.059   13.8   0.0        0.1   13.0   0.0    1.5  1  RNA_helicase     RNA helicase
        0.1   12.4   0.0       0.13   12.0   0.0    1.2  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
       0.12   12.3   0.0       0.18   11.7   0.0    1.3  1  Rad17            Rad17 P-loop domain
       0.21   11.7   0.0        0.8    9.8   0.0    1.8  2  tRNA_lig_kinase  tRNA ligase kinase domain


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0   2.1e-47   1.9e-44       1     157 [.      11     168 ..      11     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 2.1e-47
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 +G+GK+t+G++l+++lg+ f D+D+ ++ +t++++aei++ eg+e+Fr++E+e lk++++  + +iatGGG+vl e nr++++e+g vi+L ++ e+l+
  EHU02230.1  11 RGCGKTTIGEALSHALGYAFRDTDHHLQFTTQRTVAEIVAAEGWESFRARETESLKAVTAP-STIIATGGGMVLAEVNRRYMREHGQVIWLSAPSEVLA 108
                 7************************************************************.9************************************ PP

                 HHHHHTTS...SGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI 100 erlkadke...RPllqekskeeelleelaereplyeeaadvvvdeseeskeevaeeileal 157
                 +rl++++e   RP+l+++  +ee++e l++r +ly+ aa++ vd+ + + e+v+e+il+ l
  EHU02230.1 109 RRLESQPEaaqRPTLTGRPIAEEMTEVLRARAHLYRMAAHHEVDAMQPP-ERVVEQILQSL 168
                 *****99999************************************999.9*******986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   7.8e-11     7e-08       1     119 [.       5     120 ..       5     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 7.8e-11
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.....aldeskrldedkldklldaleenssaleegknlvidghlaele.seaakd 93 
                 I+l G+ G+GKtt++++Ls  l  g+  rd+  + +  + ++ +     +  es r++e    k+++a   +++    g+  v+  +   +  ++ ++ 
  EHU02230.1   5 IFLIGARGCGKTTIGEALSHAL--GYAFRDTDHHLQFTTQRTVAeivaaEGWESFRARETESLKAVTAPSTIIA---TGGGMVLAEVNRRYMrEHGQV- 97 
                 99*******************9..88888877777777777766555555666666666666677777777664...455555555554444144444. PP

      AAA_18  94 ikkvvLtaspeelleRlekRgyeeak 119
                    ++L a+ e+l++Rle + +   +
  EHU02230.1  98 ---IWLSAPSEVLARRLESQPEAAQR 120
                 ...***************99876665 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.6e-06    0.0014       7      52 ..      10      55 ..       5      98 .. 0.76
   2 ?    1.4   0.0      0.35   3.1e+02     117     158 ..      97     144 ..      55     162 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.6e-06
  Cytidylate_kin2  7 eyGsgGetigeaLAekLglpfydreiieevakelglseeeveevde 52
                       G+g++tigeaL++ Lg+ f d +   +   +  + e  ++e  e
       EHU02230.1 10 ARGCGKTTIGEALSHALGYAFRDTDHHLQFTTQRTVAEIVAAEGWE 55
                     57*********************98777777777777766655555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.35
  Cytidylate_kin2 117 rvfltapledrvkrvaeregl......seeearekiketDkrrakyyk 158
                       ++l+ap e+ ++r++++ +       + + ++e+++e  ++ra  y+
       EHU02230.1  97 VIWLSAPSEVLARRLESQPEAaqrptlTGRPIAEEMTEVLRARAHLYR 144
                      478888888888887777665444444555666666666666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   1.0   7.3e-07   0.00066      25     107 ..       3     113 ..       1     173 [. 0.57

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.3e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala................. 106
                  +++l+G++G+GK+++ ++l +al  +    +  ++d++         +q  +++++ + +++e     +e +r++ +e+l+                 
  EHU02230.1   3 LSIFLIGARGCGKTTIGEALSHALGYA----F-RDTDHH---------LQFTTQRTVAEIVAAE----GWESFRARETESLKavtapstiiatgggmvl 83 
                 589******************988877....3.333333.........2222232333333333....4444444444444433344444444445666 PP

      AAA_16 107 .............................a 107
                                              +
  EHU02230.1  84 aevnrrymrehgqviwlsapsevlarrleS 113
                 666565555555555555555555554441 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.9e-07   0.00062       2      42 ..       5      49 ..       4      97 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.9e-07
                EEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH CS
       AAA_5  2 vlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlk 42
                ++L+G+ G+gK+++ e l++al    +++ +  q+t + t ++++
  EHU02230.1  5 IFLIGARGCGKTTIGEALSHALgyafRDTDHHLQFTTQRTVAEIV 49
                79********************44444444444444444444443 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.0   9.3e-06    0.0083       2     122 ..       5     118 ..       5     163 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.3e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpvr 100
                 ++l+G+ G+GK+t  e l  +lg+ + ++d  ++  + + +  +   ++ +++++++  e + ka +a  ++i+  +    +e  r  +  r++g    
  EHU02230.1   5 IFLIGARGCGKTTIGEALSHALGYAFRDTDHHLQFTTQRTVAEIV-AAEGWESFRARETESL-KAVTAPSTIIATGGGMVLAEVNR--RYMREHG---Q 96 
                 689********************9999999844422222222221.2223333333333444.55566666666555433333332..2234445...5 PP

      AAA_33 101 ivvvetdeetlkeRlakRaang 122
                 +++++++ e+l++Rl+ + ++ 
  EHU02230.1  97 VIWLSAPSEVLARRLESQPEAA 118
                 6777777777777766665554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.7   5.9e-06    0.0053       2      37 ..       5      42 ..       4     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.9e-06
      AAA_28  2 ivitGgestGKTtlleaLaar.gypvv.pEaareilee 37
                i ++G+ ++GKTt+ eaL+   gy    ++ + +++++
  EHU02230.1  5 IFLIGARGCGKTTIGEALSHAlGYAFRdTDHHLQFTTQ 42
                789****************6557765444444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05     0.011       2      30 ..       6      34 ..       5      76 .. 0.79
   2 ?   -1.8   0.0       4.4     4e+03      24      40 ..     140     155 ..     122     170 .. 0.44

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
                EEESSTTSSHHHHHHHHHHHHTHEEEEEE CS
         AAA  2 llyGppGtGKTllakavakelgvefleis 30
                 l+G  G+GKT++ +a+ + lg  f  ++
  EHU02230.1  6 FLIGARGCGKTTIGEALSHALGYAFRDTD 34
                799*****************987766554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.4
                 HEEEEEETTTCSSSSTT CS
         AAA  24 vefleisgsellskyvg 40 
                 ++++++ ++  + + ++
  EHU02230.1 140 AHLYRMAAHHEV-DAMQ 155
                 444444444444.3333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.4   2.2e-05      0.02      36     139 ..       5     113 ..       2     118 .. 0.68
   2 ?    4.1   0.2     0.033        29      67      98 ..      90     128 ..      72     168 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
      AAA_25  36 allaGapgtGKttl..aldlalava...tGkpwlgpvapeqgkVl.yvsaEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrggtl.. 125
                 + l+Ga+g+GKtt+  al+ al +a   t++++  ++ ++q++V  +v+aE+ e  +r R  + ++a++++++  ++ +  v  +++ ++++ +g++  
  EHU02230.1   5 IFLIGARGCGKTTIgeALSHALGYAfrdTDHHL--QF-TTQRTVAeIVAAEGWE-SFRARETESLKAVTAPSTIIATGGGMVlAEVNRRYMREHGQViw 99 
                 5799********984444445555554444433..56.4566665378888888.9****999999999999998887777777777777777776656 PP

      AAA_25 126 ltadvdaleaaiee 139
                 l a  + l++++e+
  EHU02230.1 100 LSAPSEVLARRLES 113
                 44445556666665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.033
      AAA_25  67 vapeqgkVlyvsaEdsedelrrRlravgeal.........r 98 
                 +  e+g V+++sa  + + l+rRl+ + ea+          
  EHU02230.1  90 YMREHGQVIWLSA--PSEVLARRLESQPEAAqrptltgrpI 128
                 44599*******6..6667******9988875554443220 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.7e-05     0.024      28      51 ..       6      29 ..       2      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                EEEESTTSSHHHHHHHHHHHCTT. CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlldAilFvLGer 51
                +++G+ G+GK+ + +A+++ LG +
  EHU02230.1  6 FLIGARGCGKTTIGEALSHALGYA 29
                79********************53 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.2e-05     0.047       5      27 ..       5      27 ..       2      67 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
      AAA_14  5 lvitGaRrvGKTtllkqlikell 27
                +++ GaR +GKTt+ + l + l 
  EHU02230.1  5 IFLIGARGCGKTTIGEALSHALG 27
                6899**********877765444 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.9e-05     0.062       4      23 ..       5      24 ..       2      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.9e-05
   PduV-EutP  4 illiGkvgsGKttLtqalkg 23
                i+liG+ g+GKtt+ +al++
  EHU02230.1  5 IFLIGARGCGKTTIGEALSH 24
                99**************9986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   9.7e-05     0.087       7      38 ..       4      40 ..       2     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.7e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee......e 38
                +++++G  G+GKTt  + l + l  +a+ ++       
  EHU02230.1  4 SIFLIGARGCGKTTIGEALSHALG-YAFRDTdhhlqfT 40
                689****************99984.4444445555441 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.3     0.012        11      22      43 ..       6      27 ..       2      73 .. 0.79
   2 ?    6.9   0.1    0.0052       4.6      29      66 ..      77     115 ..      57     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
      AAA_30 22 vltGpAGtGKttalkalreawe 43
                +l G+ G GKtt+ +al +a+ 
  EHU02230.1  6 FLIGARGCGKTTIGEALSHALG 27
                689**********999988765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0052
      AAA_30  29 tGKttalkalreaweaa.ggrviglAptgkaAkvLaeel 66 
                 tG  ++l+++++ + ++ g+ + + Ap++  A++L+ + 
  EHU02230.1  77 TGGGMVLAEVNRRYMREhGQVIWLSAPSEVLARRLESQP 115
                 6777899999666666638777899**********9653 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.14       2      54 ..       2      59 ..       1      91 [. 0.72
   2 ?   -1.4   0.0       1.8   1.6e+03     155     176 ..     123     144 ..     112     163 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfi...dtekGlksldadkfpdie......swedfld 54
                +l+i+++G  g GKTt+   l  ++l     dt++   +l+++   ++       +we f+ 
  EHU02230.1  2 SLSIFLIGARGCGKTTIGEAL-SHALGYafrDTDH---HLQFTTQRTVAeivaaeGWESFRA 59
                789***************999.6666551115555...555554444444446777877775 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
      AAA_24 155 ktanelkeevDlvlranlkred 176
                  t++ + ee+++vlra+ + + 
  EHU02230.1 123 LTGRPIAEEMTEVLRARAHLYR 144
                 5677888999999998876544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.5e-05     0.068      24      49 ..       7      32 ..       4      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.5e-05
      AAA_23 24 ItGpNGaGKTTildAiklaLygetpr 49
                ++G  G+GKTTi +A+  aL+  +++
  EHU02230.1  7 LIGARGCGKTTIGEALSHALGYAFRD 32
                67999***************865554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011       0.1       1      31 [.       5      35 ..       5      61 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkk 31
                  i+l G++g+GK+t+ + L++al  ++ ++ +
    EHU02230.1  5 IFLIGARGCGKTTIGEALSHALGYAFRDTDH 35
                  7899*****************9987744333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.13       3      27 ..       6      32 ..       4      61 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      AAA_21  3 vliGpNgsGKSnLLdaldllarl..dr 27
                +liG+ g+GK+++ +al+++ ++  ++
  EHU02230.1  6 FLIGARGCGKTTIGEALSHALGYafRD 32
                79*****************97665422 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.18      49      80 ..       6      37 ..       3      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
       Rad17 49 LisGPsGCgkstvvkvLskelgiklrewlnpv 80
                 + G  GCgk+t+ + Ls  lg+ +r+    +
  EHU02230.1  6 FLIGARGCGKTTIGEALSHALGYAFRDTDHHL 37
                46799******************999876555 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00089       0.8       4      26 ..       7      28 ..       4      53 .. 0.76
   2 ?   -1.1   0.0         2   1.7e+03     105     141 ..     130     167 ..     125     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00089
                     EE--TTSSHHHHHHHHHHH-TTS CS
  tRNA_lig_kinase  4 piatiGCGkttvaltlenlfgeW 26
                      i + GCGktt+ ++l++  g +
       EHU02230.1  7 LIGARGCGKTTIGEALSHALG-Y 28
                     57778***********99877.4 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
                      HHHHHHHHHHH.H-------------.-HHHHHHHHHH CS
  tRNA_lig_kinase 105 eevreltkdRv.lkRGdnhqsikvesedekkvkkimeg 141
                      ee++e+ + R  l R   h  + + +  e+ v++i+++
       EHU02230.1 130 EEMTEVLRARAhLYRMAAHHEVDAMQPPERVVEQILQS 167
                      67788888886357888899999988889999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1324.92
//
Query:       EHU02231.1  [L=235]
Description: hypothetical protein CKS_5054 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-68  230.0  26.5    8.4e-68  229.2  26.5    1.3  1  DUF2076         Uncharacterized protein conserved in bacteria
     0.0042   16.6   0.8     0.0071   15.8   0.8    1.3  1  EH_Signature    EH_Signature domain
     0.0063   16.3   0.6      0.015   15.1   0.6    1.6  1  PKcGMP_CC       Coiled-coil N-terminus of cGMP-dependent prot
  ------ inclusion threshold ------
       0.04   13.2   4.5      0.053   12.9   4.5    1.1  1  Dynamitin       Dynamitin
      0.047   13.6   0.4      0.066   13.1   0.4    1.2  1  rRNA_proc-arch  rRNA-processing arch domain
       0.15   11.7   5.4       0.76    9.4   5.5    1.8  1  TauE            Sulfite exporter TauE/SafE
       0.33   10.2   1.3       0.43    9.8   1.3    1.1  1  TMPIT           TMPIT-like protein
       0.89    9.1   5.3        1.2    8.7   5.3    1.1  1  Phage_GPO       Phage capsid scaffolding protein (GPO) serine
       0.89    8.8   6.0        1.3    8.3   6.0    1.2  1  DUF4407         Domain of unknown function (DUF4407)
        7.9    6.9   8.1         39    4.6   8.1    1.9  1  DUF1690         Protein of Unknown function (DUF1690)


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2  26.5   4.7e-71   8.4e-68       1     258 [.       1     231 [.       1     233 [. 0.76

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 4.7e-71
     DUF2076   1 MtpeErqLidgLfdRlkqaesq..prDaeAealIaqalrkqPaApYylaQtvlvqeaaLkqanariqeLeaqlqqlqqqaqeaqaqpssggFLsglFGg 97 
                 M+ eE+qLi++Lf+Rlkqaesq  +rDa Ae+lI+q+l++qP ApYy+aQ++l+qeaaLk++n+ri+eLe+ql    +q+q++q+ +ssggFLs+lFGg
  EHU02231.1   1 MQREEQQLIENLFSRLKQAESQtaARDAAAEQLIKQHLQEQPGAPYYMAQAILIQEAALKKLNERIKELENQL----AQQQAQQQPKSSGGFLSSLFGG 95 
                 9******************99999*************************************************....445555678889********** PP

     DUF2076  98 gkkerpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaapqpggGggFLggAlqtAAGVaGGvllangleslfsgksgeegaasasqsa 196
                 g+ +    +++a+p++++++   q+              +pq +qp+a++++ +G+gFLggAlqtA GVaGGv++a++l+s+f++          sq++
  EHU02231.1  96 GSAQ----PQPAQPQWNSAP---QQ--------------APQPQQPYASAPAPRGSGFLGGALQTAVGVAGGVVMADMLTSMFHH----------SQPQ 163
                 **99....334444444433...11..............11111222222223689*****************************..........89** PP

     DUF2076 197 eeeeiinnyyssssladdaedadnasadsfadsdsssdnn...adaasdddsdddss......ddgggDDd 258
                 e+++iin+++   +++d++++ + ++++sf d++  ++++   +++  +d+  d+++      +  ++DDd
  EHU02231.1 164 EIVNIINEQP-LPQVDDSLNTFNGGNDQSFLDQNGADNQSfldQSNGWSDSYADNGDlndfggN--DFDDD 231
                 **********.66666667777776666666655444443100344455666677778755333..44443 PP

>> EH_Signature  EH_Signature domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8     4e-06    0.0071       8     192 ..       9     184 ..       2     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4e-06
  EH_Signature   8 leklreklgeaqrpspdddealaakvraqlesss.........laqtsralrevrlva........vlqervlakkrrrvlrsLlrsYfksfdplas 87 
                   +e l+++l+ a   + ++d a  + +++ l++           +  +++al++++  +        ++q ++++k+++ +l+sL+    ++ ++ ++
    EHU02231.1   9 IENLFSRLKQAESQTAARDAAAEQLIKQHLQEQPgapyymaqaILIQEAALKKLNERIkelenqlaQQQAQQQPKSSGGFLSSLFG---GGSAQPQP 102
                   47889999999999999999999999999988889999999997778888888888888999999999****************43...35555555 PP

  EH_Signature  88 rkrmrelrnllkrqskelsrsrqellesikealgPd..llknkelltenpasklaalaagdkdslreraellgiasaswltqelvlaylkqlaeldd 182
                     ++ ++ ++ ++  +  ++        + +a +P+   +  + l t+ ++++ +  ++               + +s++++++ ++ ++ ++e++ 
    EHU02231.1 103 --AQPQWNSAPQQAPQPQQP--------YASAPAPRgsGFLGGALQTAVGVAGGV--VM-------------ADMLTSMFHHSQPQEIVNIINEQPL 174
                   ..788888877776664444........445555661112233333333333222..22.............2355799999999999999999999 PP

  EH_Signature 183 aqakeaLdel 192
                    q++++L  +
    EHU02231.1 175 PQVDDSLNTF 184
                   9999999766 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   8.4e-06     0.015       7      21 ..      63      77 ..      58      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.4e-06
   PKcGMP_CC  7 DERIRELEkrlaekd 21
                 ERI+ELE++la++ 
  EHU02231.1 63 NERIKELENQLAQQQ 77
                7***********986 PP

>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.5   2.9e-05     0.053     158     236 ..       2      85 ..       1      93 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
   Dynamitin 158 tdaqealakrllsqleefkeskaaskkkeksnkityelyyapeq......eksqqlakiaelekRLaeLEklvGlssesldelsa 236
                 ++++++l+++l+s+l++++++  a+++  +++ i+ +l+++p        +   q a + +l +R++eLE+ + ++++++++ s+
  EHU02231.1   2 QREEQQLIENLFSRLKQAESQT-AARDAAAEQLIKQHLQEQPGApyymaqAILIQEAALKKLNERIKELENQLAQQQAQQQPKSS 85 
                 5778999999*******98665.45555689***********9999999889999******************999998665544 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   3.7e-05     0.066     182     239 ..      22      79 ..       6      92 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
                     STTHHHHHH.HHHHH.HHHHSS---B--TTTTS----HHHHHHHHHHHHHHHHHHTSGG. CS
  rRNA_proc-arch 182 kseareeva.kavqe.lkrrfpgiplldpikdmkikdeefkkllkkiealesrlaknpll 239
                     + +ar+++a + +++ l++  pg p+    + + i++ ++kkl ++i++le++la+ + +
      EHU02231.1  22 QTAARDAAAeQLIKQhLQE-QPGAPYYM-AQAILIQEAALKKLNERIKELENQLAQQQAQ 79 
                     2233333333445553333.35999994.48999********************997654 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.5   0.00042      0.76     122     161 ..     121     160 ..      74     170 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00042
        TauE 122 rptaillvligglvGllsGllGiGgGfllvpllllllglp 161
                 + +a++    g+l+G+l + +G+ gG++++ +l+++++ +
  EHU02231.1 121 YASAPAPRGSGFLGGALQTAVGVAGGVVMADMLTSMFHHS 160
                 3344444455666777777777777777777777776433 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.3   0.00024      0.43      22     102 ..       6      94 ..       1     104 [. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
       TMPIT  22 kqkleelsklqskcskeikkqkkrlkel.ksslkklkksvk.........eeeeeeveelkeelkerkkvlk.evesllpkknglylklvlG 102
                 +q +e+l++  ++  ++++     +++l k++l++     +           +e ++++l+e++ke +++l+ + ++  pk++g +l+ + G
  EHU02231.1   6 QQLIENLFSRLKQAESQTAARDAAAEQLiKQHLQEQP---GapyymaqaiLIQEAALKKLNERIKELENQLAqQQAQQQPKSSGGFLSSLFG 94 
                 4445555555555555555554444443133333332...1334555666789999**************995556667788****998877 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.3   0.00067       1.2     180     263 ..       8      86 ..       1      92 [. 0.63

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00067
   Phage_GPO 180 rikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrpeatG 263
                  i++l+s+ k+ +++++a    a +l+ ++++e+  +      +++++   +++++kl++++++L+++L +++a+  q+p+++G
  EHU02231.1   8 LIENLFSRLKQAESQTAARDAAAEQLIKQHLQEQPGAPY---YMAQAILIQEAALKKLNERIKELENQLAQQQAQ--QQPKSSG 86 
                 355566666666555555555555555555555554444...5556677777778889999********999984..4455555 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.0   0.00073       1.3     186     243 ..      17      88 ..       2      92 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00073
     DUF4407 186 kekkaqldaaqaelaelkakld.................atarlaalraelaeleaerakeraasqaaaaaddGl 243
                 k++++q +a++a+ ++l ++                   ++a+l++l+++++ele+++a+++a++q+++++  G+
  EHU02231.1  17 KQAESQTAARDAAAEQLIKQ-HlqeqpgapyymaqailiQEAALKKLNERIKELENQLAQQQAQQQPKSSG--GF 88 
                 44444445555555444444.24677888888888888889999999999999999999999988886554..55 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   8.1     0.022        39      39     101 ..       9      82 ..       2      91 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.022
     DUF1690  39 VaeeLkkLraeeeet..lkkfeeklekellkde.........adakdelsskalnekieeLrkkleefkkkeee 101
                 +++ +++L+++e++t  ++++ e+l k+ l+++         a   +e   k+lne i+eL+++l++ +++++ 
  EHU02231.1   9 IENLFSRLKQAESQTaaRDAAAEQLIKQHLQEQpgapyymaqAILIQEAALKKLNERIKELENQLAQQQAQQQP 82 
                 44444555555554411455666677777777779999887655567778888999999999999986666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1921  (0.107145); expected 358.6 (0.02)
Passed bias filter:                     1132  (0.0631379); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 1594.07
//
Query:       EHU02232.1  [L=149]
Description: uncharacterized DUF188 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-50  169.4   0.0    3.1e-50  169.2   0.0    1.0  1  DUF188    Uncharacterized BCR, YaiI/YqxD family COG1671


Domain annotation for each model (and alignments):
>> DUF188  Uncharacterized BCR, YaiI/YqxD family COG1671
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.0   1.7e-54   3.1e-50       2     129 ..      18     145 ..      17     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 1.7e-54
      DUF188   2 iirvaerlkvevvlvansslrlpssplvetvvVdsgadaaDdaIveraeagDlvvTqDipLAarvlekgaaalsprGevyteenIdellamRdlmkklR 100
                 ++r+a+r+++ v++van+slr+p+sp+ +t++V++g+d+aD++Iv+r++ gDlv+T+DipLAa+v+ekgaaal+prGe y+ ++I+e+l+mRd+m+++R
  EHU02232.1  18 LYRAADRTQTVVTFVANQSLRVPPSPWLRTLQVPAGFDVADNEIVKRVNVGDLVITADIPLAAEVIEKGAAALNPRGERYSPATIRERLTMRDFMDTMR 116
                 799************************************************************************************************ PP

      DUF188 101 ragertggpkkfskedrsrFakaLdrlla 129
                 ++g++tggp+++s +dr++Fa++Ld++l+
  EHU02232.1 117 ASGVQTGGPAALSPRDRQQFANELDSWLR 145
                 ***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1153.97
//
Query:       EHU02233.1  [L=270]
Description: NAD(P)-binding pyrroline-5-carboxylate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-39  134.1   2.3    1.9e-39  134.1   2.3    2.0  2  P5CR_dimer     Pyrroline-5-carboxylate reductase dimerisation
    1.8e-18   66.9   0.4    4.4e-18   65.7   0.4    1.7  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
    7.6e-06   26.0   0.1    1.9e-05   24.7   0.1    1.7  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
    1.6e-05   25.1   1.4    2.5e-05   24.5   0.2    1.9  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    0.00015   22.6   0.1     0.0004   21.2   0.1    1.8  1  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
  ------ inclusion threshold ------
      0.054   14.1   0.0       0.12   13.0   0.0    1.6  1  DUF937         Bacterial protein of unknown function (DUF937)
       0.73    9.7   6.2       0.13   12.1   0.2    2.4  3  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.34   8.7e+02      27      48 ..      45      66 ..      40     108 .. 0.74
   2 !  134.1   2.3   7.3e-43   1.9e-39       1     103 []     163     267 ..     163     267 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.34
                HHHHHTT--HHHHHHHHHHHHH CS
  P5CR_dimer 27 dagvklGlsreeArelaaqtva 48
                + +++ G++ +e+ e +aq v 
  EHU02233.1 45 EMAEQYGIHAAESAEALAQHVD 66
                5678889999999998888763 PP

  == domain 2  score: 134.1 bits;  conditional E-value: 7.3e-43
                 CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS..HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHH CS
  P5CR_dimer   1 EkqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese..paelrdkvtspgGtTiaglkeleegglraavieaveaaa 97 
                 E +++ v ++sGs+pAyvf++iea+ada+v+ G++r++A+++aaq+v+G+a+++le++  p+el+d+v+spgGtTi+++k+lee+g+r+aviea+++++
  EHU02233.1 163 EYLIHSVVGVSGSAPAYVFMFIEAMADAAVAGGMPRAQAYQFAAQAVKGSAQMVLETGkhPGELKDMVCSPGGTTIEAVKVLEEKGFRSAVIEAMQQCM 261
                 567899***********************************************9955559*************************************** PP

                 HHHHHH CS
  P5CR_dimer  98 krskel 103
                 ++s++l
  EHU02233.1 262 AKSEKL 267
                 **9986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.4   1.7e-21   4.4e-18       1      97 []       5     100 ..       5     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.7e-21
                    EEEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEES CS
  F420_oxidored   1 kigiiGaGnmgealasgllaaga.qpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvisvl 95 
                    kig+iG+Gnm++a++ gl+++g+ +p+ i++  +r+ ++ +e+ae++g+ + + ++e +a++ dv++ avkp+++   l++la   +k++lv+s++
     EHU02233.1   5 KIGFIGGGNMAKAIIGGLINSGQvAPSAIWIY-DRKASTNQEMAEQYGIHAAE-SAEALAQHVDVLFGAVKPNVILRDLNDLATCMKKETLVVSIA 98 
                    7*****************************55.********************.99**************************************** PP

                    SS CS
  F420_oxidored  96 ag 97 
                    ag
     EHU02233.1  99 AG 100
                    97 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   7.4e-09   1.9e-05      11     112 ..       2      98 ..       1     109 [. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.4e-09
                   TT-EEEEES-SHHHHHHHHHHHCCT...-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S. CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakg...vkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveealkkrkk 104
                   +ekk+  iG G+ma+ ++  L+++g     ++ +  R  +  +e+ae+++      ++ e+ ++l +++dv++ a++ + ++ + +++  ++kk   
    EHU02233.1   2 QEKKIGFIGGGNMAKAIIGGLINSGqvaPSAIWIYDRKASTNQEMAEQYGI-----HAAESAEALAQHVDVLFGAVKPNVILRDLNDLATCMKK--- 90 
                   689*******************996222579******************44.....57888899999********9987777777888888866... PP

                   .EEEEE-- CS
  Shikimate_DH 105 plllvDia 112
                   ++l+v ia
    EHU02233.1  91 ETLVVSIA 98 
                   57777776 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.2   9.9e-09   2.5e-05       1      88 [.       5      96 ..       5     105 .. 0.86
   2 ?   -2.2   0.1       1.6   4.2e+03     111     125 ..     187     201 ..     182     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 9.9e-09
                   EEEEE--SHHHHHHHHHHHHTT-....EEEEE-SSHHHHHHHHHT.TEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagy....kvavynrtkekveelvae.gakaaesieelvasldvvitmvkagkavdeviegllealkkgdilid 88
                   kigfiG G+M + ++  l+++g+     + +y+r+++  +e++++ g++aaes+e+l++++dv +  vk +   ++ +++l+  +kk+++++ 
     EHU02233.1  5 KIGFIGGGNMAKAIIGGLINSGQvapsAIWIYDRKASTNQEMAEQyGIHAAESAEALAQHVDVLFGAVKPNVILRD-LNDLATCMKKETLVVS 96
                   79****************98885444489*******99999999856*********************98776666.5678888888888876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
                    EEEEEEESHHHHHHH CS
  NAD_binding_2 111 fldaPVSGGeegAek 125
                    + da V GG   A++
     EHU02233.1 187 MADAAVAGGMPRAQA 201
                    557888888877765 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.6e-07    0.0004       2      67 ..       5      69 ..       4      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
                  EEEEETTSHHHHHHHHHHHHTTTTE.EEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEE CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrle.evvalldpdaeraeavaesfgveaysdleelladpeidavi 67
                  ++++iG+G++++  +  l +s + +   + ++d++a+  +++ae++g++a ++ e+l++  ++d+++
    EHU02233.1  5 KIGFIGGGNMAKAIIGGLINSGQVApSAIWIYDRKASTNQEMAEQYGIHAAESAEALAQ--HVDVLF 69
                  89*************9**999888899999****************************9..666655 PP

>> DUF937  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.5e-05      0.12      10      78 ..      41     113 ..      36     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
      DUF937  10 apiqqlaqqlGedeaqaesalsaalpallgalaqnaaspgGlgdLlgallg.....gglggggLgdllsllqng 78 
                 ++ q++a+q G+  a++++al++ + +l+ga++ n    ++l dL + +++     +  +g  L++l s+l+++
  EHU02233.1  41 STNQEMAEQYGIHAAESAEALAQHVDVLFGAVKPNV-ILRDLNDLATCMKKetlvvSIAAGVTLDNLASVLGHD 113
                 67799*******************************.5699999999998866666555557888888888865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   1.1      0.27   6.8e+02       1      39 [.       5      47 ..       5      64 .. 0.66
   2 ?   12.1   0.2   5.1e-05      0.13      65     176 ..      50     161 ..      35     163 .. 0.85
   3 ?   -1.4   0.0       0.7   1.8e+03      59      59 ..     230     230 ..     182     267 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.27
                EEEEE--SCCHHHHHHHHHHTT....-EEEEE-S-HHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasag....leVvlvdiseealekal 39
                k++ iG G m + i   ++++g      + ++d+++++ ++ +
  EHU02233.1  5 KIGFIGGGNMAKAIIGGLINSGqvapSAIWIYDRKASTNQEMA 47
                6899********9998888887222234566666555555544 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5.1e-05
                 HCEEEES-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--.EEEEEE-TT--HHHHH CS
     3HCDH_N  65 arisfttdleeav.dadlviEavvEnlelKrkvfaelekiakpdailasnTSslsiselaealkrperviglHFfnPpplmk.LvEvvrgekTseetva 161
                   i+++++ e+++ ++d+ + av  n+ l    +++l++++k+++++ s + ++ +++la++l +++++i + + +P  + + +  v +++  +++ ++
  EHU02233.1  50 YGIHAAESAEALAqHVDVLFGAVKPNVILRD--LNDLATCMKKETLVVSIAAGVTLDNLASVLGHDRKIIRAMPNTPSLVGEgMTSVTPNALVEQSELD 146
                 4577777888888899999999998888765..789**************************************999988754889999999******* PP

                 HHHHHHHHTT-EEEE CS
     3HCDH_N 162 tvvelakkigktpvv 176
                 +vv+++k++g+ +vv
  EHU02233.1 147 EVVAMFKSFGQAAVV 161
                 **********99997 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.7
                 H CS
     3HCDH_N  59 e 59 
                  
  EHU02233.1 230 V 230
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2104.87
//
Query:       EHU02234.1  [L=510]
Description: FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-43  148.7   0.0    2.5e-43  148.4   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.3e-16   60.3   0.1    2.5e-16   59.4   0.1    1.5  1  Rieske          Rieske [2Fe-2S] domain
    2.8e-11   43.8   0.3    9.2e-11   42.2   0.0    1.9  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    9.6e-11   41.5   0.0    2.4e-10   40.2   0.0    1.7  1  Rieske_2        Rieske-like [2Fe-2S] domain
      6e-08   32.3   0.0    4.6e-07   29.4   0.0    2.0  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    8.8e-06   25.5   0.3       0.19   11.3   0.0    3.7  3  DAO             FAD dependent oxidoreductase
    1.5e-05   24.3   0.2       0.17   11.0   0.0    3.2  3  GIDA            Glucose inhibited division protein A
    6.1e-05   23.5   0.1    0.00022   21.7   0.1    2.1  1  Reductase_C     Reductase C-terminal
    6.4e-05   23.0   0.4        1.3    9.0   0.0    3.3  3  NAD_binding_9   FAD-NAD(P)-binding
    0.00018   21.7   0.0      0.031   14.5   0.1    2.8  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0011   17.9   0.1      0.023   13.6   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
     0.0019   18.4   0.0        1.1    9.5   0.0    3.2  3  TrkA_N          TrkA-N domain
     0.0028   16.4   0.1       0.28    9.9   0.0    3.1  4  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.081   12.0   0.3         24    3.8   0.0    3.6  4  Lycopene_cycl   Lycopene cyclase protein
        0.1   11.7   0.1       0.25   10.5   0.0    1.6  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   2.1e-46   2.5e-43       4     294 .]     120     409 ..     117     409 .. 0.91

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 2.1e-46
                  EEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   4 vviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias....evvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  vv+GgG+AG aa  +l++   +++ +l+e+e   ++++  l+k + + + d +++     e    + +++e+l +  v +id+ ++++        d+
   EHU02234.1 120 VVLGGGAAGSAALWRLRHegFKGRLILIEQEPDAPYDRTALTKFVPSGKMDIDEVPsllgE---DIMAHVERLQK-RVERIDNHQHRIIF-----ADG 208
                  9*****************7668889999****************99999999988887752...56778998888.9*************.....789 PP

                  EEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaalee 191
                  +++++dkl++AtG+ p ++ + G +  +++ +r+ +++  l ++  + ++iv++G+++iG+ElA+ l++   +vt++ + + +  ++++++++++  +
   EHU02234.1 209 TTLQFDKLLIATGGAPVKPALAGRNLAGVHILRSKQHTADLLQAVDDtQQIVIIGNSFIGMELASSLRNRDIDVTVIARHPLPFaKQFGEAVGRYFYQ 306
                  9***********************777777766666666555555556************************************************** PP

                  HHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC.....TECCS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx RF
  Pyr_redox_2 192 alekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva.....ggkgg 283
                   ++++Gv++  + ++ ++ g+++ +  v l++g+ i+ad v++a+Gv+p t ++     l+l e+g +++de+lr+  ++++++GD+a     +g  +
   EHU02234.1 307 LHQANGVKFI-EGEIDALLGEDH-VNaVRLKTGKHIAADVVLFATGVKPATHFI---HDLPLLEDGSLQTDEQLRV-AENVWVAGDIAtypspQGPLR 398
                  **********.99999***9998.666************************998...6678889************.9**************9999** PP

                  S--HHHHHHHH CS
                  xxxxxxxxxxx RF
  Pyr_redox_2 284 pelaqaAvqqG 294
                  +e+  +A qqG
   EHU02234.1 399 IEHFRVAEQQG 409
                  *********98 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   2.1e-19   2.5e-16       4      89 .]       5      89 ..       2      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 2.1e-19
                EEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEET CS
      Rieske  4 avakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprplatyp 89
                 v + +d+p+++p++ k+g+++l+++rd +++v+A++  C+H+gapl++g+i e+ +l+Cp+H+++++  +Gk+ +  a ++l++yp
  EHU02234.1  5 FVVALKDLPHRQPVKKKLGETELLLIRD-GDNVHAYQAKCPHAGAPLEQGAICEN-RLICPWHKATFElDSGKMCEPLALADLKQYP 89
                577889*********************7.***********************777.************99***99998999898886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.2     5e+03       3      11 ..     120     128 ..     119     150 .. 0.86
   2 !   42.2   0.0   7.7e-14   9.2e-11       2      78 ..     259     334 ..     258     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.2
                 EEECSSHHH CS
   Pyr_redox   3 vvvGgGyig 11 
                 vv+GgG  g
  EHU02234.1 120 VVLGGGAAG 128
                 89****988 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 7.7e-14
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 +v++G ++ig+ElA+ l++   +Vtv+ r++ +  ++++e++++++ + +++ng++++ ++  + + g++  v++v+l
  EHU02234.1 259 IVIIGNSFIGMELASSLRNRDIDVTVIARHPLPFaKQFGEAVGRYFYQLHQANGVKFIEGEIDA-LLGEDH-VNAVRL 334
                 8*********************************************************987533.333333.555665 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     2e-13   2.4e-10       1     103 [.       2      99 ..       2     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2e-13
                 SEEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TT.SB-BEE-EEEST CS
    Rieske_2   1 ewvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledee.vslkvypvrved 98 
                 +++ v++l+dl++ + v + +++++ +l+r   ++v+A ++++p    ++l +G ++++     + +P +k +f+L++G+++e  +   lk ypvr+e+
  EHU02234.1   2 NYQFVVALKDLPHRQPVKKKLGETELLLIRD-GDNVHAYQAKCPH-AGAPLEQGAICEN----RLICPWHKATFELDSGKMCEPLAlADLKQYPVRIEN 94 
                 58899*************************9.99***********.588*******998....789***************99655489********** PP

                 SEEEE CS
    Rieske_2  99 gkvev 103
                 ++v v
  EHU02234.1  95 EAVLV 99 
                 ***98 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.23   2.8e+02       1      27 [.     120     146 ..     120     174 .. 0.89
   2 !   29.4   0.0   3.8e-10   4.6e-07     101     281 ..     190     366 ..     183     385 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.23
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylil 27 
                  ++ G+G+aG aa   l++ g++  lil
   EHU02234.1 120 VVLGGGAAGSAALWRLRHEGFKGRLIL 146
                  689**************9999877665 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 3.8e-10
  Pyr_redox_3 101 feeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkh.....yskvkefhkya.gqkvvViGgknSavDaAlelvrkgaeVtv 192
                  +++Ve+++++ ++ ++ ++  t++ +k++iAtG    P k+   G +   +h     +++ + ++ +  +q++v+iG +  +++ A  l +++ +Vtv
   EHU02234.1 190 QKRVERIDNH-QHRIIFADGTTLQFDKLLIATGG--APVKPALAGRNLAGVHilrskQHTADLLQAVDdTQQIVIIGNSFIGMELASSLRNRDIDVTV 284
                  5677777766.4667889999************8..9********9976555111112333334444447999************************* PP

  Pyr_redox_3 193 vtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk.slfel 281
                  + r+    ++  ++       +   + +l + + +k+++  e++++  +++   v+ ++gk++   d v++atG kp ++f+++ +l+e+
   EHU02234.1 285 IARHPLPFAK--QFGE----AVGRYFYQLHQANGVKFIEG-EIDALLGEDHVNAVRLKTGKHIA-ADVVLFATGVKPATHFIHDlPLLED 366
                  ****854443..3554....44555555555566999998.8999999999999*****98876.59999************97555443 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00016      0.19       3      33 ..     120     154 ..     119     229 .. 0.89
   2 ?    1.8   0.0      0.12   1.4e+02       2      32 ..     259     291 ..     258     302 .. 0.86
   3 !    8.2   0.2    0.0014       1.6     151     206 ..     303     357 ..     295     464 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
                 EEECTSHHHHHHHHHHHHT.T....EEEEESSSSTT CS
         DAO   3 viiGGGiiGlstAyeLarr.g....Vtllekgdiag 33 
                 v+ GGG +G+++ + L r+ g     +l+e++++a 
  EHU02234.1 120 VVLGGGAAGSAALWRL-RHeGfkgrLILIEQEPDAP 154
                 9***************.6656778*******98765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdia 32 
                 +viiG   iG+  A  L  r   Vt++ +++ +
  EHU02234.1 259 IVIIGNSFIGMELASSLRNRDidVTVIARHPLP 291
                 9****************777799******9665 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0014
                 HHHHHHHHTT-EEEESECEEEE..EEEETCEEEEEEECTEEEEEEEEEEE--GGGHH..H CS
         DAO 151 alaraaealGveilegtevtgl..eeedgkvwgverttpgendaadavVnaaGawsd..l 206
                 ++++  +a+Gv+++eg e+ +l  e   + v  v+  + g   aad v  a+G+     +
  EHU02234.1 303 YFYQLHQANGVKFIEG-EIDALlgE---DHVNAVR-LKTGKHIAADVVLFATGVKPAthF 357
                 5667779*********.***98332...3477774.33365557899*****97744433 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0011       1.3       3      28 ..     120     145 ..     118     166 .. 0.85
   2 ?    1.1   0.0      0.14   1.7e+02     114     150 ..     189     222 ..     180     258 .. 0.77
   3 !   11.0   0.0   0.00014      0.17     104     150 ..     306     351 ..     297     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
                 EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                 +V+GgG AG++A + +   G+k  Li
  EHU02234.1 120 VVLGGGAAGSAALWRLRHEGFKGRLI 145
                 89*******************99998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
                 EES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 114 ieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 ++++ve+++   ++ + ++ +dg+t++ ++  iatG 
  EHU02234.1 189 LQKRVERID---NHQHRIIFADGTTLQFDKLLIATGG 222
                 677788884...57788999****************7 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00014
                 HHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 104 klenepnleiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 +l++ + ++ ie+e++ l + e++v++v++++g++i a++v  atG 
  EHU02234.1 306 QLHQANGVKFIEGEIDAL-LGEDHVNAVRLKTGKHIAADVVLFATGV 351
                 6788999***********.559************************7 PP

>> Reductase_C  Reductase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.9e-07   0.00022       1      51 [.     428     478 ..     428     501 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-07
                  EEEEEETTEEEEEEE--TT--EEEEEEETTTTEEEEEEEETTEEEEEEEES CS
  Reductase_C   1 WfWSDqydlklQiaGlatgadevvvRgdpeerafsvfylrdgrlvaveavn 51 
                  +fW+  y+++ +++G+a+++d++   g+ ee++f++fy ++g+l av +++
   EHU02234.1 428 FFWTAHYGTRYEYLGHAADWDDYQSVGSLEEKEFMAFYGKEGQLAAVFSCG 478
                  6***************************999***************98876 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11   1.3e+02       1      35 [.     120     151 ..     120     170 .. 0.82
   2 !    9.0   0.0    0.0011       1.3     116     155 ..     185     222 ..     176     223 .. 0.84
   3 !    7.8   0.0    0.0025       2.9     111     155 ..     307     351 ..     292     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpse 35 
                    ++ G+G++G a+l rL ++   + + ++ l+++++
     EHU02234.1 120 VVLGGGAAGSAALWRLRHE---GFKGRLILIEQEP 151
                    578*************888...5777777777654 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
  NAD_binding_9 116 tvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +ve ++++v+++++++ +  ++ adg++l++d++ +A+G 
     EHU02234.1 185 HVERLQKRVERIDNHQHR--IIFADGTTLQFDKLLIATGG 222
                    577888899999877665..889***************95 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0025
  NAD_binding_9 111 lpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    l++   v+++++e+ +l  ++   av+l++g+++aad V  A+G 
     EHU02234.1 307 LHQANGVKFIEGEIDALLGEDHVNAVRLKTGKHIAADVVLFATGV 351
                    445557999********9999999*******************95 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.6e-05     0.031       1      29 [.     121     151 ..     121     153 .. 0.86
   2 ?    4.0   0.0     0.049        59       1      28 [.     261     288 ..     261     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
                    EE--SHHHHHHHHHHHCCTE..EEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf..dvlllekrd 29 
                    ++G+G++G++a ++L+ +gf  +  l+e+ +
     EHU02234.1 121 VLGGGAAGSAALWRLRHEGFkgRLILIEQEP 151
                    89****************9955688888766 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.049
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    I+G  + G+ +A+ L+++++dv+++ ++
     EHU02234.1 261 IIGNSFIGMELASSLRNRDIDVTVIARH 288
                    7888899*****************9776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.06        72       3      34 ..     120     150 ..     118     154 .. 0.85
   2 !   13.6   0.0   1.9e-05     0.023     145     210 ..     290     352 ..     261     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.06
                     EEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase   3 vivGGGtaGwlaAaalakalkgklevtlvese 34 
                     v++GGG aG+ a   l++ +  k ++ l+e+e
      EHU02234.1 120 VVLGGGAAGSAALWRLRHEG-FKGRLILIEQE 150
                     89********9999999988.66788888876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.9e-05
                     S--EEEE-HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG CS
  Trp_halogenase 145 lsyAyhldaalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfr 210
                     l +A ++ +  + ++  +  +a+Gv+ +eg++    l  +++v+++rl++g+++ ad ++ ++G +
      EHU02234.1 290 LPFAKQFGE-AVGRYFYQLHQANGVKFIEGEID--ALLGEDHVNAVRLKTGKHIAADVVLFATGVK 352
                     556666654.4788999999************4..466789*******************999986 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.052        62       1      32 [.     119     152 ..     119     164 .. 0.89
   2 ?    0.6   0.0      0.53   6.3e+02      27      51 ..     186     210 ..     176     213 .. 0.87
   3 !    9.5   0.0   0.00093       1.1       1      31 [.     259     289 ..     259     311 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.052
                 EEEES-SHHHHHHHHHHHHTT...EEEEEEESSHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg...kdvvvidkdee 32 
                 ++++G G  G++ + +L+++g   +  ++i+++++
  EHU02234.1 119 FVVLGGGAAGSAALWRLRHEGfkgR-LILIEQEPD 152
                 79*****************777855.9****9987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.53
                 EESSHHHHHHHHHTTSEEEES-TTS CS
      TrkA_N  27 idkdeerveelreeglevvvgdatd 51 
                 +++ ++rve++ ++  +++ +d+t 
  EHU02234.1 186 VERLQKRVERIDNHQHRIIFADGTT 210
                 888999****************996 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00093
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkde 31 
                 i+iiG + +G++la  L+++ +dv+vi + +
  EHU02234.1 259 IVIIGNSFIGMELASSLRNRDIDVTVIARHP 289
                 89*****************9989****9876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.053        63       4      25 ..     120     141 ..     117     157 .. 0.74
   2 !    9.9   0.0   0.00023      0.28     128     186 ..     189     246 ..     177     255 .. 0.74
   3 ?   -1.6   0.0      0.68   8.2e+02       2      33 ..     258     289 ..     257     302 .. 0.87
   4 ?   -1.3   0.0      0.55   6.6e+02     139     165 ..     326     352 ..     300     356 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.053
                  EEE--SHHHHHHHHHHHHTT-- CS
  HI0933_like   4 iviGgGaAGlmaAisaakrgkr 25 
                  +v+GgGaAG  a  +++++g +
   EHU02234.1 120 VVLGGGAAGSAALWRLRHEGFK 141
                  8********9888888776654 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00023
                  -S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-.GGG.T--SHHHHHHHHTT-- CS
  HI0933_like 128 letevksvekeedgkfrvktkseeeleadklvlAtGGlSi.Pkl.Gstgkgyklaeqfght 186
                  l+++v+++   +++++r+   ++++l+ dkl++AtGG+ + P l G + +g++++++ +ht
   EHU02234.1 189 LQKRVERI---DNHQHRIIFADGTTLQFDKLLIATGGAPVkPALaGRNLAGVHILRSKQHT 246
                  45555555...66667888889***************976444437777778888777776 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.68
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekak 33 
                  ++++iG    G+  A s+++r+ +V+++ + +
   EHU02234.1 258 QIVIIGNSFIGMELASSLRNRDIDVTVIARHP 289
                  799************************97765 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.55
                  TTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 139 edgkfrvktkseeeleadklvlAtGGl 165
                  ed++  v++k++++++ad +++AtG +
   EHU02234.1 326 EDHVNAVRLKTGKHIAADVVLFATGVK 352
                  56667788888*************965 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.13   1.6e+02       3      38 ..     120     155 ..     119     162 .. 0.88
   2 ?    0.7   0.0      0.18   2.2e+02      92     147 ..     177     227 ..     156     253 .. 0.75
   3 ?    0.6   0.0      0.19   2.3e+02       2      38 ..     259     292 ..     258     298 .. 0.82
   4 ?    3.8   0.0      0.02        24      99     141 ..     310     351 ..     294     362 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
  Lycopene_cycl   3 vviGaGpAglslAarlteakpglkvvlieaspsllf 38 
                    vv G+G+Ag +   rl ++  + +++lie  p+ ++
     EHU02234.1 120 VVLGGGAAGSAALWRLRHEGFKGRLILIEQEPDAPY 155
                    89*********9999999999999999999998865 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
  Lycopene_cycl  92 ellerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglaslkka 147
                     l e+++ + v++l+ +ve++ +++    +++ ++g +++    + a+g +++ k+
     EHU02234.1 177 LLGEDIM-AHVERLQKRVERIDNHQH---RIIFADGTTLQFDKLLIATG-GAPVKP 227
                    5556666.8999*********98888...89999*****9999999999.555543 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.19
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsllf 38 
                    +v+iG    g+ lA  l   + ++ v++i a   l+f
     EHU02234.1 259 IVIIGNSFIGMELASSL--RNRDIDVTVI-ARHPLPF 292
                    89***************..9999999999.4443445 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.02
  Lycopene_cycl  99 engvklleakvesveeeeageslvvleggrkirarlvvdargl 141
                     ngvk+ e+ +++   e+     v l+ g++i a +v+ a+g+
     EHU02234.1 310 ANGVKFIEGEIDALLGEDH-VNAVRLKTGKHIAADVVLFATGV 351
                    589**********988777.6999*****************94 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00021      0.25     135     226 ..     203     289 ..     180     305 .. 0.75
   2 ?   -3.1   0.0       2.8   3.3e+03     324     339 ..     335     350 ..     328     352 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
  K_oxygenase 135 veskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                  +       + ++l+  +l++++G+ p  P+++ +     +++ s++ + +  +   + ++i+++G    + e++  l +r    ++++++r +
   EHU02234.1 203 IIF----ADGTTLQFDKLLIATGGAPVKPALAGRNLAGVHILRSKQHTADLLQaVDDTQQIVIIGNSFIGMELASSLRNRDI--DVTVIARHP 289
                  333....346788899***************9888877999999988877755478899*******9999999999987754..677777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.8
  K_oxygenase 324 geeetlevdavvlATG 339
                  ++ + + +d+v++ATG
   EHU02234.1 335 KTGKHIAADVVLFATG 350
                  55678899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3485.06
//
Query:       EHU02235.1  [L=100]
Description: putative starvation-inducible protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-32  111.3  18.9      7e-17   61.0   5.8    2.2  2  PsiF_repeat  psiF repeat
     0.0062   17.0   0.4     0.0074   16.7   0.4    1.1  1  Salp15       Salivary protein of 15kDa inhibits CD4+ T cell a


Domain annotation for each model (and alignments):
>> PsiF_repeat  psiF repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   5.8   7.8e-21     7e-17       1      34 []      24      57 ..      24      57 .. 0.97
   2 !   56.4   5.2   2.1e-19   1.9e-15       3      34 .]      67      98 ..      65      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 7.8e-21
  PsiF_repeat  1 ltaQQeKMktCNaeAkakaLkGdeRKaFMssCLs 34
                 +t+QQ+KM++CN +A+++aLkGd RK+FMs+CL+
   EHU02235.1 24 KTPQQQKMAMCNEHATSQALKGDVRKKFMSDCLK 57
                 59*******************************8 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 2.1e-19
  PsiF_repeat  3 aQQeKMktCNaeAkakaLkGdeRKaFMssCLs 34
                 +QQ KMktCN +A++k+L+G++RK+FMs+CL+
   EHU02235.1 67 PQQVKMKTCNLQAGDKKLTGEARKTFMSQCLK 98
                 8******************************8 PP

>> Salp15  Salivary protein of 15kDa inhibits CD4+ T cell activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   8.3e-07    0.0074       5      80 ..       6      80 ..       3      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.3e-07
      Salp15  5 ivlvlaglcfgeessssssdaeeskknvgeklpdfigdckkelalkllkaCsekkksfkkinekkvdfknCtftCk 80
                + lvlagl++g + s ++++ ++++k +  +    +++ k ++ +k+ + C +k+++   + +++v++k+C+   +
  EHU02235.1  6 MTLVLAGLLVGGSASAAEKT-PQQQKMAMCNEHATSQALKGDVRKKFMSDCLKKDSKVADMSPQQVKMKTCNLQAG 80
                67899***997776666554.44555444444555556666888**********9****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 818.70
//
Query:       EHU02236.1  [L=84]
Description: hypothetical protein CKS_5059 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-21   75.2   3.6      5e-21   75.1   3.6    1.0  1  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
     0.0088   15.3   0.4     0.0092   15.2   0.4    1.0  1  DUF4704          Domain of unknown function (DUF4704)
  ------ inclusion threshold ------
      0.016   15.3   0.7      0.018   15.2   0.7    1.1  1  TetR_C_4         YsiA-like protein, C-terminal region


Domain annotation for each model (and alignments):
>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   3.6   8.3e-25     5e-21       1      86 []       1      83 [.       1      83 [. 0.98

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 8.3e-25
  Anti-adapt_IraP  1 MknlilelLvklakkeeeskeLtaqVealelllsallltlskekvqeliesvekainsalessdevlksdaeLLlkqinrllsvar 86
                     Mknli+elL+ la+kee+ske +aq+eale++++a+l+ l +e+ + +++s+e+a+ +a+ +   ++++++ LL+ +++rll+ +r
       EHU02236.1  1 MKNLIAELLITLAEKEEASKEQVAQIEALEIVVTAMLRLLPPEQHHAIVSSIETAMMNADVD---HNDKNTVLLKRYVTRLLNRPR 83
                     ***********************************************************999...9****************9876 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   1.5e-06    0.0092      61     140 ..       5      84 .]       1      84 [] 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-06
     DUF4704  61 llsliaelleasstnqqqlvqtkGflvlaflLqkvspkhLtrevleallslakvlkelnssaskvLlrdlldkvlfnpkl 140
                 + +l++ l+e+++++++q++q + ++++ +++ ++ p +    +++++   +  +   ++ +++vLl+  + ++l +p++
  EHU02236.1   5 IAELLITLAEKEEASKEQVAQIEALEIVVTAMLRLLPPEQHHAIVSSIETAMMNADVDHNDKNTVLLKRYVTRLLNRPRI 84 
                 5689**********************999888888888889999999998888888788899************999875 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   3.1e-06     0.018      11      71 ..      14      76 ..       5      81 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.1e-06
                HHHHHHTT-SSHHHHHHHHHHHHHHHHHC-HHHHHHHHTTCCGSSHHHHH..HHHHHHHHHHH CS
    TetR_C_4 11 kikeeikekesaeeklkllvekhfsqlsadkelaivtqlelrqsnlelrl..kinevlkgylt 71
                + +e+ ke+    e l+++v   +++l  +++ aiv  +e    n ++ +  k   +lk y+t
  EHU02236.1 14 EKEEASKEQVAQIEALEIVVTAMLRLLPPEQHHAIVSSIETAMMNADVDHndKNTVLLKRYVT 76
                44667778888899**************************77777766551156667899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 664.45
//
Query:       EHU02237.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-97  325.6   3.4    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.1   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.2e-11   45.2   9.0    2.6e-11   44.1   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.042   13.4   2.1      0.052   13.1   0.7    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.049   12.2   7.0      0.078   11.5   7.0    1.3  1  FUSC             Fusaric acid resistance protein family
      0.054   12.7   1.5       0.11   11.7   1.5    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.15   12.4   3.6       0.93    9.9   0.3    2.5  2  Csm1_N           Csm1 N-terminal domain
       0.15   12.0   0.4         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.16   11.7   5.7       0.25   11.1   5.7    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.18   11.9  10.2       0.31   11.1  10.2    1.3  1  DHR10            Designed helical repeat protein 10 domain
        0.2   10.9   0.3       0.32   10.2   0.3    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.21   11.3   2.2        0.8    9.4   0.3    2.1  2  LXG              LXG domain of WXG superfamily
       0.23   11.2  10.2       0.38   10.5  10.2    1.2  1  ERM              Ezrin/radixin/moesin family
       0.28   11.6   3.7       0.55   10.6   1.8    2.4  2  HHH_8            Helix-hairpin-helix domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.47   10.9   3.2       0.99    9.8   3.2    1.5  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
          1    8.5   2.7        1.6    7.9   2.7    1.2  1  TMPIT            TMPIT-like protein
        3.6    7.1   7.2        9.3    5.7   7.2    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        8.2    7.1   8.7         12    6.6   1.6    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.5      0.12   1.1e+02     167     214 ..      34      82 ..      21     121 .. 0.47
   2 !  323.5   0.0   1.4e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawl 214
                   sq++a   + i++l+a+ ++++++    +    ++lr++++r++ ++ e+  
    EHU02237.1  34 SQRVAAYASAINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERIS 82 
                   46666666667777777777763334432...33333333333333322211 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.4e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02237.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02237.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02237.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.5e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.5e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02237.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   3.8e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 3.8e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02237.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   9.0   2.9e-14   2.6e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 2.9e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU02237.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   5.8e-05     0.052     144     229 ..      10      96 ..       3     189 .. 0.66
   2 ?   -1.3   0.0       1.4   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU02237.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334444455555555566666677789999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02237.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.0   8.7e-05     0.078     213     294 ..       4      89 ..       1     121 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale 294
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a a   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +
  EHU02237.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMA 89 
                 448899**********************************999**********999996667888888888888888888877766 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00012      0.11      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA  i+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02237.1  34 SQRVAAYASAINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3     0.001      0.93      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.16   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +   i++Lk+ +a+l+  
  EHU02237.1 23 IRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02237.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   2.3e+03      26      52 ..      16      42 ..       9      60 .. 0.74
   2 ?    3.2   0.0     0.093        83      15      53 ..      64     102 ..      54     108 .. 0.81
   3 ?    5.1   0.0     0.023        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
         UME 26 laekkraikaleeliklagssissalp 52
                l+e++ +i+ + e  +l++++++ ++ 
  EHU02237.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYAS 42
                678888888888888888888766554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.093
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU02237.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02237.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.7   0.00028      0.25     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++  +++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02237.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASAINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 5788887777776655577777899999**********9862678999**********************************99986 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.2   0.00034      0.31      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02237.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00036      0.32      24      76 ..      37      91 ..      32     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y + i++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU02237.1 37 VAAYASAINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00089       0.8     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.6   0.1      0.21   1.9e+02      97     131 ..      63      97 ..      61     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s ++ lk++v++L+ m 
  EHU02237.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU02237.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  10.2   0.00042      0.38      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     +   +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02237.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999****************************999999999999887335577789*******************9865 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.8   0.00061      0.55       9      65 ..      24      76 ..      20      79 .. 0.76
   2 ?   -1.4   0.0       3.6   3.2e+03       5      18 ..     362     375 ..     356     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00061
                HHHHHHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHTTHCTTSTT--HHHHHHHHH CS
       HHH_8  9 eeladllelkgedpfrvraYrrAaraiealpeeitsleeeltklpgiGkkiaakiee 65
                +++a++  l    + rv aY+ A++ ++al  +++ ++   ++   + +k+a++++e
  EHU02237.1 24 RKMAEYNRLL---SQRVAAYASAINRLKALVAKLQRMQF-GKSSEKLREKTARQVRE 76
                6788888888...79****************99999742.24455555666665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 HHHHHHHHHHHHHC CS
       HHH_8   5 adaLeeladllelk 18 
                 ++aL+++ +l+ ++
  EHU02237.1 362 TEALKRIGKLYAIE 375
                 58899999988877 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0011         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.6   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02237.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02237.1 167 ACCSCDHI 174
                  35555554 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2    0.0011      0.99      32     104 ..      21      92 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  TSNAXIP1_N  32 dlieefkaYkdlLseIKkEYelyiahllesqreaqylkakl.ktlsessdkraleleekreelralekeskall 104
                 + i ++ +Y +lLs+  + Y  +i+ l+    ++q    +  k+ ++  +k+a +++e++e+++al++e ++ l
  EHU02237.1  21 TTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRM--QFgKSSEKLREKTARQVREAEERISALQEEMAEVL 92 
                 5688999***********************9999877..66677788888999999999999******988776 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.7    0.0018       1.6      12      92 ..      13      95 ..       7     100 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0018
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + ++  +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02237.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55566667888999999999999999999999999999999999997744224445555555555555555555777776655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.2      0.01       9.3      71     152 ..      14      97 ..       2     102 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
  HAUS-augmin3  71 vileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   + l+e+++++++ ++  + L +  a   +  n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU02237.1  14 ALLQEQQTTIRKMAEYNRLLSQRVAAYASAINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55566666666666666666667777888889999999998877644677888999**********************998765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.6     0.014        12      22      53 ..      12      43 ..       9      65 .. 0.88
   2 ?    2.5   1.7      0.25   2.3e+02      34      57 ..      68      91 ..      44     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02237.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASA 43
                677889********************887665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02237.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888988888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1074  (0.059903); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.41
# Mc/sec: 3857.14
//
Query:       EHU02238.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02238.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 863.14
//
Query:       EHU02239.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02239.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02239.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02239.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02239.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 814.35
//
Query:       EHU02240.1  [L=435]
Description: hexuronate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-58  198.7  48.6    3.2e-55  187.5  29.0    2.0  2  MFS_1            Major Facilitator Superfamily
      9e-08   31.4  29.6      1e-06   27.9   9.5    2.6  3  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
       0.95    9.5   0.0       0.95    9.5   0.0    4.7  4  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5  29.0   5.4e-59   3.2e-55       2     351 ..      30     389 ..      29     390 .. 0.91
   2 !   25.1  11.6   1.2e-09   7.3e-06      66     177 ..     320     429 ..     309     435 .] 0.83

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 5.4e-59
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ll++ +++++r+ lg+++p  l+++l++s  +++++++++ l++ +++++ G+l+d +G +  +l++++++++++ll + ++++w  l++lr+++G+ +
  EHU02240.1  30 LLGVTVNYITRNSLGILAP-ELKNTLNMSTEQYSWVVAAFQLAYTLFQPVCGWLIDVIGLKMGFLICAVIWSITCLLHA-GAGSWlHLALLRFVMGASE 126
                 78999**************.9*****************************************************44444.5999999************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......kgt 191
                 +a++pa a +i +wfpk+er+ a g++++gfs+Ga+l+p++  +   s+gW+++f++ ++++l+++ l +++ + +p +++r s++e+        +  
  EHU02240.1 127 AAATPANAKAIGEWFPKKERPVAAGWAGVGFSIGAMLAPPIIYVAHISFGWQGAFLLTGGLGLIWVAL-WWWGYHSPERHPRLSDEERDfitqdkeVIG 224
                 *****************************************************************776.455556666666666666667999999999 PP

       MFS_1 192 gpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr......rrrlllallll 284
                 ++ p+++a+k + k + ++ + i ++l+  +++ l++++plyl   +g++ l +++++  l++l++ i+++ +g+l + + r       + ++ + + +
  EHU02240.1 225 EKLPFFTALKVIGKEKKFYGIAIPVFLAEPAWAVLSFWVPLYLANERGMD-LKQIVMFAWLPFLAADIGSVASGYLTKIYVRwfgctrVNSIVASSITG 322
                 9999999***********978888888877********************.**************************9955555556688899999999 PP

       MFS_1 285 llaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                 +++ ++lal+ + +++ l+++++ + Gfg+ +++++l al+++ + +++++t++g  +++  +++++
  EHU02240.1 323 AVLMISLALMTLVKDPYLAIALISIGGFGHQVISCMLSALLVERFDRRQMATVNGMRGSCAWIASFI 389
                 9999999999999999999988888899******************************999999987 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 1.2e-09
       MFS_1  66 llglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsll 163
                 ++g++l+++ +l+  +    + l ++l  + G+g  ++  +  al+++ f +++ + ++g+ ++++ +++ +  l+ g+ a+ +g+  +f++++++ l+
  EHU02240.1 320 ITGAVLMISLALMT-L-VKDPyLAIALISIGGFGHQVISCMLSALLVERFDRRQMATVNGMRGSCAWIASFIFSLIIGVTADTIGFNPLFIAMGFFDLI 416
                 45666666663333.3.677769999999********************************************************************** PP

       MFS_1 164 afvlfllllpeepp 177
                 ++v+ ++++ +e++
  EHU02240.1 417 GAVFLVMFI-AERR 429
                 *99644444.4433 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   9.5   1.7e-10     1e-06      42     190 ..      55     197 ..       8     204 .. 0.88
   2 ?   -1.5   0.2      0.14   8.6e+02      47      77 ..     277     307 ..     258     328 .. 0.64
   3 !   10.1  10.7   4.5e-05      0.27     320     439 ..     315     427 ..     304     431 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.7e-10
                 HH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHH CS
    Sugar_tr  42 eessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalv 140
                 + s+ +++++v++f++  ++ + + g+l+d++G k ++li+av+ +i  +l a a    s+  l++ R+++G +  +a+      i+E  pkk R    
  EHU02240.1  55 NMSTEQYSWVVAAFQLAYTLFQPVCGWLIDVIGLKMGFLICAVIWSITCLLHAGAG---SWLHLALLRFVMGASEAAATPANAKAIGEWFPKKERPVAA 150
                 337889**************************************************...9*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 141 slyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                 ++  ++ ++G ++a  + ++   + +   w+  + l+  + l+ ++l+++
  EHU02240.1 151 GWAGVGFSIGAMLAPPIIYVAHISFG---WQGAFLLTGGLGLIWVALWWW 197
                 ***************99999877777...888888888888776666665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.14
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkk 77 
                 ++ +++ + ++ a iGs+ +g+l++++ R  
  EHU02240.1 277 QIVMFAWLPFLAADIGSVASGYLTKIYVRWF 307
                 5666777777777888888888888876643 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HH CS
    Sugar_tr 320 lllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyv 418
                  + +++++a++++ l+   l++  k+    ++ai++i +  + ++  + +++  l+ E f+ +  +++  +   + w+a+f+ sl++ +++++ig  + 
  EHU02240.1 315 IVASSITGAVLMISLA---LMTLVKD---PYLAIALISIGGFGHQ-VISCMLSALLVERFDRRQMATVNGMRGSCAWIASFIFSLIIGVTADTIGFNPL 406
                 5667788888888886...5555554...79******99988888.9************************************************9999 PP

                 HHHHHHHHHHHHHHHHHHS-- CS
    Sugar_tr 419 flvfaglavlfiifvfffvpe 439
                 f+  +++ +++++f ++f+ e
  EHU02240.1 407 FIAMGFFDLIGAVFLVMFIAE 427
                 99999999**99999999877 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   3.2      0.12   7.4e+02      62      89 ..      88     125 ..      26     140 .. 0.58
   2 ?    9.5   0.0   0.00016      0.95      38      97 ..     151     208 ..     143     223 .. 0.64
   3 ?   -2.3   2.7      0.75   4.5e+03      49      85 ..     294     334 ..     273     336 .. 0.54
   4 ?  -11.9  15.5         3   1.8e+04      65      71 ..     383     389 ..     315     431 .. 0.48

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
  Phage_holin_3_6  62 laalwlaaliv.............aavllvlagvlalvglk 89 
                      l    +++li              a+ +l la++  ++g +
       EHU02240.1  88 L---KMGFLICaviwsitcllhagAGSWLHLALLRFVMGAS 125
                      2...3333333111111111122245555555555555555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00016
  Phage_holin_3_6  38 gllgaagvlallalllllvalalalaa..lwlaalivaavllvlagvlalvglkklkkakpl 97 
                      g++g++  ++++ ++ ++  +     +   w +a+++++ l ++ ++l ++g++   + ++l
       EHU02240.1 151 GWAGVGFSIGAMLAPPIIYVAH----IsfGWQGAFLLTGGLGLIWVALWWWGYHSPERHPRL 208
                      4444433333333333333332....23489*********************9976665545 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.75
  Phage_holin_3_6  49 lalllllvala..lala.a.lwlaalivaavllvlagvlal 85 
                      +a ++l+   +  ++ + + + +a  i++avl++  +++ l
       EHU02240.1 294 VASGYLTKIYVrwFGCTrVnSIVASSITGAVLMISLALMTL 334
                      33334443333334445457777777777777776666655 PP

  == domain 4  score: -11.9 bits;  conditional E-value: 3
  Phage_holin_3_6  65 lwlaali 71 
                      +w+a +i
       EHU02240.1 383 AWIASFI 389
                      3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 3577.17
//
Query:       EHU02241.1  [L=168]
Description: ferritin iron storage protein (cytoplasmic) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-39  133.3   1.4      7e-39  133.0   1.4    1.0  1  Ferritin       Ferritin-like domain
     0.0045   16.9   0.1     0.0062   16.4   0.1    1.4  1  Ferritin-like  Ferritin-like


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   1.4   7.8e-43     7e-39       3     141 ..       9     143 ..       8     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 7.8e-43
                 HHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSS.CSSHHHHHHHHHHHHHHHHHHHH CS
    Ferritin   3 aLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapke.fgsveevleaalehekkvteslr 100
                  Ln+ql+ e+ +a++yl+m++++++ g+eg a f++ ++ ee+eh+++l++++ + G+        l++i+ap+  ++s+ evl +al+hek +t++++
  EHU02241.1   9 RLNDQLNLEFFSANLYLQMSAWCSDKGYEGAASFLKMHSREEMEHMQRLFNYLSDTGA-----MPVLGTIAAPPVaYNSLNEVLIQALDHEKLITSKIN 102
                 59********************************************************.....999999999999899********************* PP

                 HHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 101 elielaeeegDpatadfledfleeqeeheweleallekler 141
                 el+  a + +D+ t +fl+++++eq+e+e+ ++++l+kl +
  EHU02241.1 103 ELAHAAMTTQDYSTFNFLQWYVAEQHEEEKLFKTVLDKLAM 143
                 **************************************987 PP

>> Ferritin-like  Ferritin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     7e-07    0.0062       1      71 [.      10      79 ..      10     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7e-07
                   HHHHHHHHHHHHHHHH.HHHHHBS-TTSH.HHHHHHHHHHHHHHHHHHHHHHHHHTT------....----- CS
  Ferritin-like  1 LqqAielEhstippYL.talySikdgtneeaealilevvkeEMlHltlvaNllnalGgsPvleapdfvpeyp 71
                   L++ ++lE+  +  YL + ++  ++g++  a++++++ ++eEM H++   N l   G+ Pvl +   +p+++
     EHU02241.1 10 LNDQLNLEFFSANLYLqMSAWCSDKGYEG-AASFLKMHSREEMEHMQRLFNYLSDTGAMPVLGTIA-APPVA 79
                   56678899999999994456777777777.999****************************99543.34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1253.92
//
Query:       EHU02242.1  [L=199]
Description: pentapeptide repeat protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-27   93.1   4.8    7.4e-09   35.1   0.0    4.5  4  Pentapeptide    Pentapeptide repeats (8 copies)
    1.5e-24   85.9  14.9    3.4e-12   46.4   6.8    3.2  3  Pentapeptide_4  Pentapeptide repeats (9 copies)
      2e-11   43.8  20.3    0.00028   21.0   0.0    4.7  5  Pentapeptide_3  Pentapeptide repeats (9 copies)


Domain annotation for each model (and alignments):
>> Pentapeptide  Pentapeptide repeats (8 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   1.0   3.8e-10   2.3e-06       1      38 [.      13      50 ..      13      50 .. 0.96
   2 !   26.9   0.1   4.6e-10   2.8e-06       1      37 [.      48      84 ..      48      84 .. 0.97
   3 !   35.1   0.0   1.2e-12   7.4e-09       3      38 ..     116     151 ..     115     152 .. 0.93
   4 !   12.2   0.0   1.8e-05      0.11       1      20 [.     144     163 ..     144     164 .. 0.56

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.8e-10
                  -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEE CS
  Pentapeptide  1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsganL 38
                  A+++ ++Ls+  L++a+++++ +t++n++ A++s +++
    EHU02242.1 13 ACFTTCDLSERVLTQAHFEDCEFTHVNFTSARFSACKF 50
                  78889*******************************98 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 4.6e-10
                  -B-TT-B-CCSCCEECCCESEEECT-B-TT-EECCEE CS
  Pentapeptide  1 AnLsgAnLsganLsganlsgAnLtgAnlsgAdLsgan 37
                  + + ++ ++++nLs ++ sg+ + g+ +++++L+g +
    EHU02242.1 48 CKFINCVFTHCNLSLVDPSGTRFFGVHFNDCKLTGMD 84
                  89********************************976 PP

  == domain 3  score: 35.1 bits;  conditional E-value: 1.2e-12
                   -TT-B-CCSCCEECCCESEEECT-B-TT-EECCEEE CS
  Pentapeptide   3 LsgAnLsganLsganlsgAnLtgAnlsgAdLsganL 38 
                   L g+  +g++L ++++++++LtgA+l+ +d++g+ +
    EHU02242.1 116 LHGVKMEGCKLIEVDFRECDLTGATLTECDMTGSLF 151
                   899999***************************987 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 1.8e-05
                   -B-TT-B-CCSCCEECCCES CS
  Pentapeptide   1 AnLsgAnLsganLsganlsg 20 
                   ++++g  ++++ L+ga+l++
    EHU02242.1 144 CDMTGSLFHHTVLRGADLTE 163
                   55666666666666666654 PP

>> Pentapeptide_4  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.6     1e-06    0.0061      15      51 ..       7      43 ..       5      44 .. 0.61
   2 !   46.4   6.8   5.6e-16   3.4e-12       1      77 []      28     111 ..      28     112 .. 0.95
   3 !   41.6   0.1   1.7e-14     1e-10       2      70 ..     115     183 ..     114     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1e-06
  Pentapeptide_4 15 nvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaev 51
                    n++++ a +  c+++e  l++++F++c + +v+f+ +
      EHU02242.1  7 NTEYYDACFTTCDLSERVLTQAHFEDCEFTHVNFTSA 43
                    5666666666666666666666666666666666654 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 5.6e-16
  Pentapeptide_4   1 aeftrcsfnncklsnvnFsearlrdcnFtecrl.....snvnFdecnlsdvdfaevdlkrasFsgcnlk.nvnfsd.klkdidF 77 
                     a f++c f  ++++ + Fs++++++c Ft c+l     s ++F   +++d++++++d+++a +  + l  + +fs+  l++ +F
      EHU02242.1  28 AHFEDCEFTHVNFTSARFSACKFINCVFTHCNLslvdpSGTRFFGVHFNDCKLTGMDWTKAWWPDFYLDhELHFSTcILTSGSF 111
                     579***************************************************************999899999988998876 PP

  == domain 3  score: 41.6 bits;  conditional E-value: 1.7e-14
  Pentapeptide_4   2 eftrcsfnncklsnvnFsearlrdcnFtecrlsnvnFdecnlsdvdfaevdlkrasFsgcnlknvnfsd 70 
                     +++ +++++ckl +v+F+e++l ++++tec+++   F++++l+ +d++e     +++ +++ ++++fs+
      EHU02242.1 115 RLHGVKMEGCKLIEVDFRECDLTGATLTECDMTGSLFHHTVLRGADLTESWHYAINIFNNTVEKARFSR 183
                     5899***************************************************************86 PP

>> Pentapeptide_3  Pentapeptide repeats (9 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.11   6.3e+02      35      46 ..      12      22 ..       6      22 .. 0.84
   2 !   17.0  15.5   8.4e-07     0.005       1      47 [.      35      78 ..      11      79 .. 0.94
   3 !    5.5   2.1    0.0032        19       2      28 ..      66      90 ..      66     113 .. 0.81
   4 !   21.0   0.0   4.7e-08   0.00028       1      47 [.     111     154 ..      93     164 .. 0.82
   5 ?   -2.9   0.0       1.4   8.3e+03      25      28 ..     178     181 ..     171     183 .. 0.46

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
  Pentapeptide_3 35 garFtgdvdFsg 46
                    +a Ft ++d+s+
      EHU02242.1 12 DACFT-TCDLSE 22
                    899**.**9985 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.4e-07
  Pentapeptide_3  1 FsganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47
                    F+++nF+ a +F+ + F++++ F++++++ +d sg+rF  +v F+++
      EHU02242.1 35 FTHVNFTSA-RFSACKFINCV-FTHCNLSLVDPSGTRFF-GVHFNDC 78
                    889999999.99999999996.****************9.****999 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0032
  Pentapeptide_3  2 sganFsgaadFrgatFsgaasFsnadF 28
                    sg++F g  +F ++  +g+ + + a++
      EHU02242.1 66 SGTRFFGV-HFNDCKLTGM-DWTKAWW 90
                    68999999.9999999999.9888877 PP

  == domain 4  score: 21.0 bits;  conditional E-value: 4.7e-08
  Pentapeptide_3   1 FsganFsgaadFrgatFsgaasFsnadFgsadFsgarFtgdvdFsga 47 
                     F+g +++g   ++g+  +   +F+++d+++a++ ++ +t ++ F+++
      EHU02242.1 111 FFGLRLHGV-KMEGCKLIEV-DFRECDLTGATLTECDMT-GSLFHHT 154
                     555567777.8888888888.888888888888888888.7777776 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 1.4
  Pentapeptide_3  25 nadF 28 
                      a+F
      EHU02242.1 178 KARF 181
                     3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1490.39
//
Query:       EHU02243.1  [L=546]
Description: peptide chain release factor RF-3 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-47  158.2   0.0    1.6e-46  157.4   0.0    1.4  1  RF3_C        Class II release factor RF3, C-terminal domain
    2.3e-45  154.5   0.0    3.6e-45  153.9   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    7.9e-12   45.4   0.1    2.6e-11   43.7   0.1    2.0  1  GTP_EFTU_D2  Elongation factor Tu domain 2
      5e-05   23.3   0.0     0.0001   22.3   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00037   20.5   0.0     0.0007   19.6   0.0    1.4  1  EFG_II       Elongation Factor G, domain II
  ------ inclusion threshold ------
      0.083   13.0   0.1        0.2   11.8   0.1    1.6  1  Phg_2220_C   Conserved phage C-terminus (Phg_2220_C)


Domain annotation for each model (and alignments):
>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.0   5.3e-50   1.6e-46       1     130 [.     404     531 ..     404     532 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 5.3e-50
                 B---EEE--SEEEEEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-SSH.HHHH CS
       RF3_C   1 FegiPsFaPElfarvrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvesedekkkle 99 
                 F+giP+FaPElf+r+rl+dplk+kql kgl qL+eEGavqvf++  ++++li+gaVG+LQf+Vv +Rlk+EY+ve+ +e +++s+arwve++d+ kk+e
  EHU02243.1 404 FTGIPNFAPELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPV-HNNDLIVGAVGVLQFDVVVARLKSEYNVEAIYEAINVSTARWVECKDA-KKFE 500
                 99******************************************9.79*******************************************999.57** PP

                 HHHHHCGGGEEEETTS-EEEEESSHHHHHHH CS
       RF3_C 100 elkkkseselvkdkkgrpvlLfenewelelv 130
                 ++++k+e++l+ d  +++++++++ ++l+++
  EHU02243.1 501 DFQRKNEVNLALDGGDNLTYIAPTMVNLNIT 531
                 ***************************9987 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.0   1.2e-48   3.6e-45       3     193 ..      30     294 ..      28     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 1.2e-48
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH....HHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka....eeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDga 97 
                  r+++ii+h D+GKtT+t+++l   +ai+ +g+++    ++++  D+++ E++rgi+i+++++++   +++ l+nl+DtPGH+dFs++++r+l ++D++
  EHU02243.1  30 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKgrgsNQHAKSDWMEMEKQRGISITTSVMQFP--YRDSLVNLLDTPGHEDFSEDTYRTLTAVDCC 126
                 689********************************887545777**********************..******************************* PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH........................................... CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk........................................... 153
                 ++v+da++Gve +t++++++ + +++pi +f+NK+Dr + +  e+ +ev+++l+                                             
  EHU02243.1 127 LMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESELKIAcapitwpigcgklfkgvyhlykdetylyqtgkghtiqevrivk 225
                 *****************************************************777**********************999999999999999999999 PP

                 .............................HHHHHHHHHTTT..........TTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 .............................eeklekygekge..........kevpvvfgSalkgegvktllealvellp 193
                                                         +          +  pv+fg al ++gv+++l+ lv ++p
  EHU02243.1 226 glnnpdldaavgeelasqlrdelelvqgaS----------HefeldaflsgQLSPVFFGTALGNFGVDHMLDGLVAWAP 294
                 999999888888888777766655554441..........0444555566679*******************9998776 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   8.8e-15   2.6e-11       2      74 .]     331     397 ..     330     397 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 8.8e-15
                  EEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  +va++rv+sG  +kG+++r   ++t+k+   + is  +tf++  +  v++a+ G+i+++ +  + i++Gdt+t
   EHU02243.1 331 RVAFMRVVSGRYEKGMKLRQ--VRTGKD---VVISDALTFMAGDRSHVEEAYPGDIIGLHNHGT-IQIGDTFT 397
                  79******************..******...*********************************.******85 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.5e-08    0.0001       2     114 .]      33     160 ..      32     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.5e-08
                 EEEEESTTSSHHHHHHHHH.................T....S.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSE CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt.................g....e.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadl 78 
                 +ai+ +p +GK+t+  + +                 +    +   +++++ g  +++   ++ ++++ ++l+DtpG  e        +++++ l  +d 
  EHU02243.1  33 FAIISHPDAGKTTITEKVLlfgqaiqtagtvkgrgsNqhakSdWMEMEKQRGISITTSVMQFPYRDSLVNLLDTPG-HE-----DFSEDTYRTLTAVDC 125
                 588999*********99986666666665555544413322223466777777777777666677888********.44.....3467778877889** PP

                 EEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  79 illvvdaseeklkpldeeleelleeakkplilvlnk 114
                  l+v+da+ +++++  ++l e+ + ++ p++  +nk
  EHU02243.1 126 CLMVIDAA-KGVEDRTRKLMEVTRLRDTPILTFMNK 160
                 ******88.669999999999977788999888887 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-07    0.0007       9      72 ..     417     479 ..     411     482 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.3e-07
      EFG_II   9 aiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykveve 72 
                  i+ ++  ++++l k L +l+eE   ++v r    +++i+ ++G l++++vv rlk+ey+ve+ 
  EHU02243.1 417 RIRLRDPLKQKQLLKGLVQLSEEG-AVQVFRPVHNNDLIVGAVGVLQFDVVVARLKSEYNVEAI 479
                 566667778899999999998775.789999999***************************986 PP

>> Phg_2220_C  Conserved phage C-terminus (Phg_2220_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.7e-05       0.2      23      57 ..     465     499 ..     461     501 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
  Phg_2220_C  23 lIkarlkegytvedlkkVidlkvkeWlndtkmekY 57 
                 ++ arlk++y+ve +++ i++ +++W++ ++ +k+
  EHU02243.1 465 VVVARLKSEYNVEAIYEAINVSTARWVECKDAKKF 499
                 688***********************988887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4085.50
//
Query:       EHU02244.1  [L=204]
Description: periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  137.2  22.2    5.4e-20   71.5   6.6    3.1  3  BON       BON domain
     0.0059   16.6   2.9        1.7    8.7   0.5    2.9  2  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.02   1.8e+02      31      53 ..      16      39 ..      13      47 .. 0.81
   2 !   71.5   6.6     6e-24   5.4e-20       1      68 [.      57     124 ..      57     125 .. 0.98
   3 !   70.8   4.5   9.9e-24   8.8e-20       2      68 ..     137     203 ..     136     204 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.02
                TCEEEECEEE.CHHHHHHHHHHHH CS
         BON 31 GvVtLsGtVd.seaekekAveiar 53
                G ++LsG+V   e++ +kA + a 
  EHU02244.1 16 GTALLSGNVFaEESASQKASQTAD 39
                7899*****977778888887775 PP

  == domain 2  score: 71.5 bits;  conditional E-value: 6e-24
                 EHHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 dD++++ak kaal++d++++++di+V+++nGvVtLsG+V+s++++ekAv+++++v+GVk+V ++l+v+
  EHU02244.1  57 DDSAVTAKAKAALVDDDSIKSTDISVKTHNGVVTLSGFVTSQDQAEKAVAVVKKVEGVKSVSDKLHVK 124
                 79***************************************************************997 PP

  == domain 3  score: 70.8 bits;  conditional E-value: 9.9e-24
                 HHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   2 DaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 Da+ ++++ka+l++d+ +++ +++Ve+++GvV LsG+V+++a+ ++A+ ia+ ++GVk+V+n+lkv+
  EHU02244.1 137 DAATTSEIKAKLLADDKVPSRNVKVETTDGVVQLSGEVANQAQSDRAESIAKAIEGVKSVKNDLKVK 203
                 8999*************************************************************97 PP

>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.5   0.00019       1.7       9      33 ..      20      44 ..      14      45 .. 0.85
   2 !    7.0   0.1   0.00063       5.7       5      24 ..      87     106 ..      84     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
                ECSS-SSHHHHHHHHHHHHHHCT-S CS
     DUF1471  9 vsgvfgspsdledalskkAdekGAk 33
                 sg+  + ++++++ s+ Ad +GAk
  EHU02244.1 20 LSGNVFAEESASQKASQTADSAGAK 44
                5777778999**************9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00063
                 EEEEECSS-SSHHHHHHHHH CS
     DUF1471   5 gtisvsgvfgspsdledals 24 
                 g+++ sg  +s++++e+a++
  EHU02244.1  87 GVVTLSGFVTSQDQAEKAVA 106
                 9****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1603.30
//
Query:       EHU02245.1  [L=53]
Description: uncharacterized DUF1328 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-13   50.7  22.5    1.8e-13   50.5  22.5    1.1  1  DUF1328          Protein of unknown function (DUF1328)
  ------ inclusion threshold ------
       0.15   11.4   7.0       0.16   11.3   7.0    1.0  1  ThrE             Putative threonine/serine exporter
       0.21   11.7   4.8       0.25   11.5   4.8    1.1  1  Pox_A14          Poxvirus virion envelope protein A14
       0.51   10.4  13.2       0.55   10.3  13.2    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
       0.92    8.9   5.7        1.9    7.9   0.6    2.2  2  MttA_Hcf106      mttA/Hcf106 family
        1.3    9.0   8.1        1.4    8.8   8.1    1.1  1  DUF2721          Protein of unknown function (DUF2721)
        2.7    8.0   6.9         18    5.3   6.9    2.0  1  DUF4389          Domain of unknown function (DUF4389)
        7.3    6.6   7.2        8.1    6.5   7.2    1.0  1  DUF1676          Protein of unknown function (DUF1676)


Domain annotation for each model (and alignments):
>> DUF1328  Protein of unknown function (DUF1328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5  22.5     8e-17   1.8e-13       1      39 []       6      44 ..       6      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 8e-17
     DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfvi 39
                +iFLviAliA++LGFgG+ag+aa+ Ak++F+++++lf+i
  EHU02245.1  6 IIFLVIALIAAALGFGGLAGTAAWAAKVVFVVGIILFLI 44
                8************************************98 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.0   7.2e-05      0.16     106     154 ..       4      52 ..       2      53 .] 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
        ThrE 106 yprwlvvlaaglaaaafallfggdwidflvaflagllggllrlllakrg 154
                 ++ ++ v+a + aa +f+ l+g   +++ v+f++g++++l++l++ +++
  EHU02245.1   4 WGIIFLVIALIAAALGFGGLAGTAAWAAKVVFVVGIILFLISLFTGRKK 52 
                 567889999999*******************************998876 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.8   0.00011      0.25      17      60 ..       4      43 ..       1      51 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
     Pox_A14 17 aGiiLLilacifafvdfskststtdkawralsivsFilgivill 60
                 Gii L++a+i a + f     t+  aw a   v F++gi++ l
  EHU02245.1  4 WGIIFLVIALIAAALGFGGLAGTA--AWAA--KVVFVVGIILFL 43
                7****************9988855..6765..577999998765 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  13.2   0.00024      0.55      51      91 ..       6      53 .]       1      53 [] 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00024
  Phage_holin_3_6 51 lllllval.a.....lala.alwlaalivaavllvlagvlalvglkkl 91
                     +++l++al a      +la ++++aa +v++v ++l ++ ++ g+kkl
       EHU02245.1  6 IIFLVIALiAaalgfGGLAgTAAWAAKVVFVVGIILFLISLFTGRKKL 53
                     3333333322111223333338889999*****************986 PP

>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5     0.011        25       5      16 ..       3      14 ..       1      24 [. 0.84
   2 ?    7.9   0.6   0.00084       1.9       2      17 ..      27      42 ..      26      53 .] 0.90

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHH CS
  MttA_Hcf106  5 elliIlvValll 16
                  + iI++V+ l+
   EHU02245.1  3 RWGIIFLVIALI 14
                 699999999887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00084
                 -HHHHHHHHHHHHHHS CS
  MttA_Hcf106  2 gapelliIlvValllF 17
                  a+ + +++vV ++lF
   EHU02245.1 27 AAWAAKVVFVVGIILF 42
                 589999*********9 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.1   0.00065       1.4      68     114 ..       7      47 ..       1      49 [. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00065
     DUF2721  68 lllvlsallvvlvvlllflsallsldlsllaailfvlalllllvsll 114
                 ++lv     ++l+ ++l ++ l +   +++a+++fv++++l+l+sl+
  EHU02245.1   7 IFLV-----IALIAAALGFGGL-AGTAAWAAKVVFVVGIILFLISLF 47 
                 4444.....4444555555333.34899*****************96 PP

>> DUF4389  Domain of unknown function (DUF4389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.9     0.008        18      21      42 ..      30      51 ..       1      52 [. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.008
     DUF4389 21 aslvlwvvvvvqflivLvtgrp 42
                a  v++vv ++ fli L+tgr+
  EHU02245.1 30 AAKVVFVVGIILFLISLFTGRK 51
                556889999***********97 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.2    0.0036       8.1     127     172 .]       6      52 ..       2      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0036
     DUF1676 127 plllalklklklLlplalgllallagKALl.lgklaLllsaiiglkk 172
                 ++ l+++l +++L++ +l++ a  a+K  + +g +++l+s + g kk
  EHU02245.1   6 IIFLVIALIAAALGFGGLAGTAAWAAKVVFvVGIILFLISLFTGRKK 52 
                 677888999******************87626888999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 446.17
//
Query:       EHU02246.1  [L=155]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-20   71.8   0.1    5.4e-20   71.6   0.1    1.1  1  DDE_3     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.1     3e-24   5.4e-20      18     142 ..       5     128 ..       1     132 [. 0.95

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3e-24
       DDE_3  18 rawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelveeeadrlellylPpyS 116
                   w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++++   +++++y P yS
  EHU02246.1   5 ADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWLKA-NPKFRVIYQPIYS 102
                 67**********************************************************************************9.9************ PP

       DDE_3 117 PelNpiEivwsklkrellkrrsfksl 142
                 P+ N +E++w+ l + + ++++ +s 
  EHU02246.1 103 PWVNHVERLWQALHETITRNHQCSSM 128
                 *****************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1210.61
//
Query:       EHU02247.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02247.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02247.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02247.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02247.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 821.66
//
Query:       EHU02248.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-39  131.7   0.0    8.3e-39  131.6   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.7e-43   8.3e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.7e-43
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++l ++ql++LleG+++++++
  EHU02248.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLMPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1054.23
//
Query:       EHU02249.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-99  332.1   3.5    1.6e-98  329.7   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.1e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
      8e-15   55.0   1.3    1.9e-14   53.8   1.3    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    1.7e-11   44.7   9.6    3.5e-11   43.7   9.6    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.017   14.9   6.4      0.027   14.3   6.4    1.2  1  FAM184           Family with sequence similarity 184, A and B
      0.021   14.0   1.7      0.042   13.0   1.7    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.022   15.1   4.3      0.091   13.1   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   14.0   1.8      0.039   13.5   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
       0.03   12.9   6.9      0.056   12.0   6.9    1.5  1  FUSC             Fusaric acid resistance protein family
      0.057   12.6   0.5      0.094   11.9   0.5    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.062   13.6   3.0       0.11   12.8   3.0    1.3  1  Troponin         Troponin
       0.11   12.2   2.6       0.33   10.6   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.16   11.8  10.8       0.26   11.1  10.8    1.2  1  ERM              Ezrin/radixin/moesin family
       0.16   11.9   0.5         21    5.1   0.0    3.0  3  UME              UME (NUC010) domain
       0.23   11.8   3.1       0.59   10.5   3.1    1.7  1  HalX             HalX domain
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.47   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
        1.1    8.4   3.1        1.7    7.8   3.1    1.2  1  TMPIT            TMPIT-like protein
        2.8    7.4   7.9        6.1    6.3   7.9    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        3.2    8.1   7.9        6.7    7.0   7.9    1.5  1  OmpH             Outer membrane protein (OmpH-like)
        7.1    7.3   8.7        7.7    7.2   1.0    3.1  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.7      0.11        94     167     215 ..      34      83 ..      21     124 .. 0.48
   2 !  329.7   0.0  1.9e-101   1.6e-98       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawle 215
                   sq++a   ++i++l+a+ ++++++    +    ++lr++++r++ ++ e+   
    EHU02249.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkS---SEKLREKTARQVREAEERISA 83 
                   56777777778888888888863344442...333333333333333222111 PP

  == domain 2  score: 329.7 bits;  conditional E-value: 1.9e-101
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl++ l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02249.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02249.1 284 DRnagsqlPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02249.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02249.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   1.3   2.2e-17   1.9e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 +++Cp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02249.1 128 ETACPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 689******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   9.6   4.1e-14   3.5e-11       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.1e-14
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a +++ r++  RkpLpa+LPRe+
   EHU02249.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQPLRQSSARKPLPASLPRET 121
                  79*****************966655666666666777888888888888999999*******************97 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   6.4   3.1e-05     0.027     114     196 ..      10      96 ..       7     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-05
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02249.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.7   4.9e-05     0.042      47     106 ..      34      90 ..      25      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.9e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02249.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************975 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00011     0.091      22      56 ..      23      57 ..      16      72 .. 0.81
   2 ?    2.9   0.5      0.17   1.4e+02      33      53 ..      71      91 ..      67      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02249.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888889************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02249.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.6   4.6e-05     0.039     144     229 ..      10      96 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.kekleekk 229
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +  l e++
    EHU02249.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaE-VLGEQH 96 
                   334445555555556666666777899999999999888866554399999*************************99944.333332 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02249.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   6.9   6.6e-05     0.056     213     295 ..       4      92 ..       1     133 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02249.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996667788888888888888888777766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   0.00011     0.094      24      76 ..      37      91 ..      33     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeq 76
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e 
  EHU02249.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEV 91
                578***************55553233356667777888889999*******9986 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0   0.00013      0.11      46     119 ..       9      96 ..       3     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THH.............HHHHH----- CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktade.............klkkllgekk 119
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K   kta++             ++  +lge++
  EHU02249.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKLREKTARQvreaeerisalqeEMAEVLGEQH 96 
                 579*******************************************9999*******5555555532222224444444555666665 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00039      0.33     152     193 ..      17      58 ..       4      65 .. 0.87
   2 ?    1.7   0.1      0.21   1.8e+02      97     131 ..      63      97 ..      61     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02249.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6779**********************************9884 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
         LXG  97 edfLeqelenglkkakevteelkdeinkilasvsd 131
                 +++L++  ++++ +a+e +++l++e+ ++l +  d
  EHU02249.1  63 SEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                 56788888899999999999999999999877665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  10.8    0.0003      0.26      17     100 ..       5      90 ..       3      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02249.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.1   1.8e+03      26      54 ..      16      44 ..       9      68 .. 0.78
   2 ?    3.1   0.0      0.11        90      15      53 ..      64     102 ..      57     105 .. 0.79
   3 ?    5.1   0.0     0.025        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02249.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988777655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpq 53 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq
  EHU02249.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQ 102
                 556555544.888888889999458**************9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.025
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02249.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00069      0.59       2      59 ..      37      96 ..      36     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeld 59
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ 
  EHU02249.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQH 96
                789*****************************8752277888**************9954 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00077      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02249.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2     0.004       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.094        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.004
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02249.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.094
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02249.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.1     0.002       1.7      12      92 ..      13      95 ..       7     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02249.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666667888999999999999999999999999999999999997744224445555555555555555555777777655 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.9    0.0071       6.1      70     152 ..      13      97 ..       2     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0071
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqlte 152
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ +
    EHU02249.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHD 97 
                   55666777777777777777777788899999999999999998874477888899************************98766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.9    0.0079       6.7      10      83 ..      15      92 ..      11     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqel 83
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l
  EHU02249.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVL 92
                6777777888899999999*********************966555.23466666666667777777777444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.0     0.009       7.7      22      53 ..      12      43 ..       8      53 .. 0.87
   2 ?    2.4   1.9      0.29   2.5e+02      34      57 ..      68      91 ..      43     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02249.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                677889********************887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02249.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                     1022  (0.0570026); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.71u 0.22s 00:00:00.93 Elapsed: 00:00:00.38
# Mc/sec: 4164.93
//
Query:       EHU02250.1  [L=783]
Description: alcaligin biosynthesis complex protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-80  270.4   0.1    2.6e-80  269.4   0.1    1.5  1  IucA_IucC       IucA / IucC family
    5.4e-52  175.3   0.6    1.2e-51  174.2   0.6    1.6  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
    3.7e-44  151.0   1.2    8.1e-44  149.9   1.2    1.6  1  FhuF            Ferric iron reductase FhuF-like transporter
    3.5e-06   27.7   0.1      1e-05   26.3   0.0    1.9  2  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> IucA_IucC  IucA / IucC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   0.1   5.8e-84   2.6e-80       1     239 []     331     581 ..     331     581 .. 0.98

  Alignments for each domain:
  == domain 1  score: 269.4 bits;  conditional E-value: 5.8e-84
                 -HHHHHHH-----SS-S-S---BT--HHHHHHH-GGG---B--EEEEEETTTEEESTT-HHH...HHHHHH-HHHHHHHHHHHC.TT--GGGEEEEEE- CS
   IucA_IucC   1 sflalEqllleGHpfhpaaKsRlgfseedaaaysPEfaasfrlrwvavhrelvtfssaeeeraqellaaeldpstraafaaelk.sgldpedyvllpvH 98 
                 +f+++E++++eGHp+++a+++R+gf+++d+ ay+PE+aa+++l wvavhr +++fss  + + ++ll++el++s  ++faa+l  +g +pedy+++pvH
  EHU02250.1 331 DFQTVESSMTEGHPCFVANNGRIGFDARDYLAYAPEAAAPVNLIWVAVHRRHAHFSSLSALSYTQLLQEELGQSILDRFAAQLTsHGVEPEDYIFMPVH 429
                 5899*******************************************************888889******************989************* PP

                 HHHHHHTHHHHSHHHHHTTSEEEEEE-SS-EEE-TTSSEEEESS-TT.-EEEE-EEEEETTEEE---HHHHHHHHHHHHHHHHHHHT-HHHHC.--EE- CS
   IucA_IucC  99 PwQwehliaplfaaeiakgrlvdlgesgdeylPtqSvRTlvnidrpa.phvKlsLsvritnsvRglspaeleaGpavsrlleellaadaflre.rfkll 195
                 PwQw++ + + faa+ia++++++lg ++d+y+++qS+RT++n ++p+ ++vK++Lsv++++++Rglsp++++++pa++++le+l+a+d++l++ +f++l
  EHU02250.1 430 PWQWQNKLLTVFAADIASRDIIYLGIGDDQYQAQQSIRTFFNRSQPHkRYVKTALSVLNMGFMRGLSPYYMATTPAINEWLETLVANDSWLQRcNFRIL 528
                 *************************************************************************************************** PP

                 -EEEEEEE-......-........T-SEEEEE--CCCT-T..-EEEEGGGGG- CS
   IucA_IucC 196 rEvagiavthpayeel........ellgvlwRenpesllg.deravplaaLla 239
                 rEva++++++++ye++        +++++lwR+np + l+ ++r++++aa l+
  EHU02250.1 529 REVAAVGYHNRHYERAikgdsaykKMFAALWRDNPVPDLQpGQRLMTMAAFLH 581
                 ***********999999999***************9999668********986 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.6   2.7e-55   1.2e-51       3     145 .]      23     165 ..      22     165 .. 0.99

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 2.7e-55
                     GGGHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTTCH CS
  Acetyltransf_8   3 eaDlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkglt 97 
                     +aD+ l+hrW++r+++++w+++++t+e+v++++ +l+a + + +lig+ +gep++++e+Y+a+ede+++yy+a+p d G+H+li++ae++ +++ 
      EHU02250.1  23 AADATLIHRWVTRDYARFWGMQNDTPEQVADFYHQLTARDPHAALIGCCNGEPAFLVECYRAREDEVGKYYPAQPDDYGMHILIAPAETPVREFS 117
                     68********************************************************************************************* PP

                     HHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEEEE CS
  Acetyltransf_8  98 tallralvhylfadprtrrvvvEPdvrNerairllekaGfekekevdl 145
                     +++++++++ylf++p+++rvvvEPdvrN +++rl+++aGf+ + ++d+
      EHU02250.1 118 WQVFSTVMDYLFSRPEVSRVVVEPDVRNDKIHRLNKRAGFRYQHTIDM 165
                     ********************************************9986 PP

>> FhuF  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   1.2   1.8e-47   8.1e-44       2     161 ..     603     759 ..     602     761 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 1.8e-47
                 HHHHHHHHHHHHHHHHHHHHH-EE---STTTEEEEEETTEEEEEEE---....TTT-EES-TT----TTSGGGB----GGGS.HHHHIIIIIIIHHHHH CS
        FhuF   2 lWlkrYfglllpPllhllleygialeahlqNvllvlddgrpvrlllrdf.egvslkaellpelpalpeevkrlltddpeelr.eevfyglfvnhlapli 98 
                 +W++rY+ ++l Pllh+++++++++++h++N++l l++++pv ++++d+ e++    + ++  + lpe+v+rl++d peel+  ++f+++f++ +++++
  EHU02250.1 603 QWVERYLNCYLSPLLHCFYQHDLVFMPHGENLILLLENNVPVSAYMKDIgEEI----AVMNPEAVLPENVQRLAVDVPEELKlLSIFTDVFDCIFRFIS 697
                 8************************************************9988....8999999*********************************** PP

                 HHHHHTTSS-HHHHHHHHHHHHHHHHHHSGGGHHHHHHT-TT-SEE-.---HHHHHH-XXXXX CS
        FhuF  99 ealaaagglsekllWsnvaellewylaelpelaerfaqalLfaptlpgkanllrvrladeaea 161
                 ++l++ g l+e+++W+ va+++ +y++ +p+la +fa++++fapt++ +++l+r++la+++++
  EHU02250.1 698 AILHQSGTLPESQFWQLVAQCVKDYQQAHPQLASKFARYDMFAPTFT-RSCLNRLQLANNQQM 759
                 ***********************************************.************998 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.2e-09     1e-05       2     138 .]      16     158 ..      15     158 .. 0.75
   2 ?   -3.5   0.0       3.4   1.5e+04      24      58 ..     506     527 ..     496     544 .. 0.50

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.2e-09
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry.lpepltleeaeewlerawaeeseeeg....yg....waivl...kdtgviGsvglrdleeedeeaelg 84 
                     ++Lrp++++D+  ++++++ ++  r+ + ++ t+e+  +++ +  ++++++ +    ++    ++++    +++ ++G    ++++++d    + 
      EHU02250.1  16 FTLRPMQAADATLIHRWVT-RDYARFwGMQNDTPEQVADFYHQL-TARDPHAAligcCNgepaFLVECyraRED-EVGKY--YPAQPDD--YGMH 103
                     58********9888**999.566665466677777777777753.33333333333222444577744754555.68887..4444444..6899 PP

  Acetyltransf_3  85 ymlaps.fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +++ap+    + +   + + +++y+f++++++r+v++ d +N +  r+ +++Gf+
      EHU02250.1 104 ILIAPAeTPVREFSWQVFSTVMDYLFSRPEVSRVVVEPDVRNDKIHRLNKRAGFR 158
                     99998878899*******************************************6 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
  Acetyltransf_3  24 vmrylpepltleeaeewlerawaeeseeegygwai 58 
                     +              ewle+  a++s  + +++ i
      EHU02250.1 506 I-------------NEWLETLVANDSWLQRCNFRI 527
                     3.............445554444444444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 6103.10
//
Query:       EHU02251.1  [L=459]
Description: retron-type reverse transcriptase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-43  146.4   0.0    1.7e-42  145.4   0.0    1.5  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
    1.2e-17   63.7   4.0      3e-17   62.4   4.0    1.7  1  GIIM      Group II intron, maturase-specific domain


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   1.9e-46   1.7e-42       1     221 [.     115     320 ..     115     321 .. 0.95
   2 ?   -3.7   0.0      0.75   6.7e+03     103     118 ..     385     400 ..     374     416 .. 0.50

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1.9e-46
                 EE-TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   1 ipKkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 ipK+g g+ R +++++v ++++++++ + L+++l++++se+++gfrpgr   dav  ++++  ++ + ++++++Dl+k+Fd+v+++ l+ +l +   + 
  EHU02251.1 115 IPKPG-GGQRELGIPTVTDRLIQQALLQVLQPLLDPTFSEHSYGFRPGRRAQDAVLAAQAF--AQSGRRVVVDVDLEKFFDRVDHDILIGRLRKRIDDA 210
                 8****.***********************************************88666666..88*****************************88888 PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                  +i l++++l     ++ ++g   + +  k g+pqG++lSPll+n++++e+++el++r  g  ++rYaDD+ ++++s+ + q+++  +++ +++ +lk+
  EHU02251.1 211 GVIWLVRAYL----NAGIMDGG--TIIQRKLGTPQGGPLSPLLANVLLDEVDKELERR--GHSFVRYADDCNVYVNSRRAGQRVMALLVRLFNRLKLKV 301
                 8999999999....67789997..79999****************************8..*************************************** PP

                 EGGG-EEE.....ESSEEETTEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvt 221
                 n++K+ ++    ++ + k+LG+ 
  EHU02251.1 302 NEAKSAVA----SAFTRKFLGYA 320
                 ********....599******96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.75
                 ................ CS
       RVT_1 103 nliksflstrsfsvrv 118
                 ++++++l++r  ++++
  EHU02251.1 385 KTLEEWLRHRLRALQL 400
                 3344444444433333 PP

>> GIIM  Group II intron, maturase-specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   4.0   3.4e-21     3e-17       2      72 ..     339     409 ..     338     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 3.4e-21
        GIIM   2 krlkrkireltkrsskgvsleelirklnpilrGWanYyrlgvakrvfskldhyirrrLrrwllrkhkkkk.r 72 
                 +++++++r+lt+r+  g s+ e+i++l p+l GW +Y++l+++ rv ++l++++r+rLr+  l+++++ +  
  EHU02251.1 339 AAFRHRVRKLTQRN-GGRSMTEVIQRLRPYLLGWRAYFSLAQTPRVWKTLEEWLRHRLRALQLKQWRRGTtM 409
                 78*********777.99**************************************************96642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3914.60
//
Query:       EHU02252.1  [L=410]
Description: multidrug efflux system protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  106.5  77.9    4.7e-29  101.4  47.3    1.9  2  MFS_1     Major Facilitator Superfamily
    8.3e-05   21.6   8.0    8.3e-05   21.6   8.0    3.1  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        0.3   11.0   0.1        0.3   11.0   0.1    3.6  3  DUF5325   Family of unknown function (DUF5325)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4  47.3   7.8e-33   4.7e-29       5     350 ..      25     361 ..      21     364 .. 0.82
   2 !   18.9  22.6   9.8e-08   0.00059      15     178 ..     236     404 ..     235     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 7.8e-33
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagal 102
                  f ++la +++ p +   +++++++ p  + + lt+y  g ++++ +lG+lsd++Grr+vll+g+++f l+ +l++ +++++ ++++lr+lqG+  +++
  EHU02252.1  25 EFATYLAHDMIQPGML-RVTQAFHVGPEWVATSLTAYLMGGMLLQWLLGPLSDKLGRRPVLLTGVAFFMLT-CLAThWVQGIGPFILLRFLQGMSLCFI 121
                 6889999999999999.9*****************************************************.66666989999**************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                  ++g+a+i + f +    ++++l++  + l+++ gpl+g ++++ + Wr +f+++a++++l+++  +l +pe++ +r+++ +        p+ ++  + 
  EHU02252.1 122 GAVGYAAIQEAFDEALSVKMMALMANVALLAPLAGPLAGTAFLAVADWRTLFLFFAALAALSLIGLGLSMPETAGDRRTSVSL-------PSLAAG-YY 212
                 **************************************************************884455555555555555554.......556666.77 PP

       MFS_1 202 allkdpvlw..illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt. 297
                 allkd++++  +l i+l+++     + ++l+p++l   lgls  l  +ll   ++++++++ l +grl+ rl+ + +l l+   +++++l+ al  +  
  EHU02252.1 213 ALLKDRQVMcgSLAIGLVTIP--CLTWVALSPVILIHGLGLS-RLDYALLQLPVFMAMIAGNLTLGRLASRLSVEQPLRLGAWPVVTGLLIAALSTLWq 308
                 788888775466666666664..445799999999*******.46666666666666666799***********9999998888888888888888877 PP

       MFS_1 298 .ssavllllvlvliGfglgfvfpsll..alasdlappeeagtasglfntagslgga 350
                  +s++ l ++l l+Gfg+g+v++ l   +l s+ a++   ++++g ++    ++ a
  EHU02252.1 309 aDSYIGLTAGLSLYGFGSGMVNAGLYrlTLFSSQAGKGSVAAMLGMVS---MVVFA 361
                 788999999************887751155555556555555555555...44443 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 9.8e-08
       MFS_1  15 lgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.l.....llvlrvlqGlgagalfpag 106
                 +++al++ +l + lg+s   + ll   ++ ++++++l lGrl+ r++    l lg+   + gll++++ s+lw +     l ++  l G+g+g+++++ 
  EHU02252.1 236 TWVALSPvILIHGLGLSRLDYALLQLPVFMAMIAGNLTLGRLASRLSVEQPLRLGAWPVVTGLLIAAL-STLWqAdsyigLTAGLSLYGFGSGMVNAGL 333
                 57888888999***************************************************666666.444433444449**********77777666 PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 + l+   +    +g++ ++l++ + + +++g  +g + + ++g  +  +++ i ++l+++l+ ++l+e++++
  EHU02252.1 334 YRLTLFSSQA-GKGSVAAMLGMVSMVVFAFGIEAGKAAYFHGGTAGFSLLNLICGVLWLWLVRVFLREKQRR 404
                 6666666655.****************************888888888888888888888888888887765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   8.0   1.4e-08   8.3e-05      51     194 ..      56     194 ..      50     195 .. 0.87
   2 ?   -3.3   9.1      0.52   3.1e+03      57     152 ..     265     365 ..     221     400 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.4e-08
                 HHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHH CS
    Sugar_tr  51 ivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitf 149
                 ++ ++l G+++ + ++g+l+d++GR+++ll+++++f+   + +++ +    +  +i+ R+l G+++ ++ ++    i+E   ++l  +++ l      +
  EHU02252.1  56 SLTAYLMGGMLLQWLLGPLSDKLGRRPVLLTGVAFFMLTCLATHWVQ---GIGPFILLRFLQGMSLCFIGAVGYAAIQEAFDEALSVKMMALMANVALL 151
                 5678999****************************************...9***********************************7777777777778 PP

                 HHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 150 Gilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                   l +   g+++  + +   wr l+ + +++a l li+l l +PE+
  EHU02252.1 152 APLAGPLAGTAFLAVAD---WRTLFLFFAALAALSLIGLgLSMPET 194
                 89999999999999999...99888776666666555543889987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT..SS-TGGGGGHHHHHHHHHHHHHH...HHHHHHTTS-SCCHHHHHHHHHHHHHHH CS
    Sugar_tr  57 vGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk..nsvevlivgRvlvGigvGlasvl...vPmyisEiApkklRgalvslyqlaitfG 150
                    i+G l++g l+ r++  + l  +a  +v g ++ a+++     s+  l++g  l G+g G++++     +++ s   + +++ +l+++  +  +fG
  EHU02252.1 265 MAMIAGNLTLGRLASRLSVEQPLRLGAWPVVTGLLIAALSTLWqaDSYIGLTAGLSLYGFGSGMVNAGlyrLTLFSSQAGKGSVAAMLGMVSMVVFAFG 363
                 5668899*******************************999557789999*************998652225777777777777777777777777777 PP

                 HH CS
    Sugar_tr 151 il 152
                 i 
  EHU02252.1 364 IE 365
                 75 PP

>> DUF5325  Family of unknown function (DUF5325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.7      0.13   7.9e+02       8      41 ..      90     123 ..      87     126 .. 0.84
   2 ?   11.0   0.1   5.1e-05       0.3       5      28 ..     170     193 ..     167     196 .. 0.85
   3 ?   -0.1   0.2      0.15   8.9e+02      12      25 ..     350     363 ..     334     371 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.13
     DUF5325   8 fllyAilAvaslmgiGiaigersilgiiiaival 41 
                 f ++  lA+  + giG +i  r + g+ ++++ +
  EHU02252.1  90 FFMLTCLATHWVQGIGPFILLRFLQGMSLCFIGA 123
                 7788889999999999999999999999999876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.1e-05
     DUF5325   5 kwifllyAilAvaslmgiGiaige 28 
                 + +fl++A lA++sl+g+G++  e
  EHU02252.1 170 RTLFLFFAALAALSLIGLGLSMPE 193
                 568****************98765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.15
     DUF5325  12 AilAvaslmgiGia 25 
                 A+l+++s++ + + 
  EHU02252.1 350 AMLGMVSMVVFAFG 363
                 44444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3006.48
//
Query:       EHU02253.1  [L=232]
Description: ATP-binding component of an ABC superfamily urea transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-32  110.8   0.0    9.3e-32  110.4   0.0    1.1  1  ABC_tran      ABC transporter
    3.3e-12   46.9   0.0    6.3e-07   29.5   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00016   21.6   0.1    0.00049   20.0   0.0    1.7  2  RsgA_GTPase   RsgA GTPase
    0.00058   20.4   0.0    0.00088   19.8   0.0    1.2  1  AAA_23        AAA domain
     0.0014   18.4   0.0     0.0023   17.6   0.0    1.3  1  AAA_29        P-loop containing region of AAA domain
     0.0034   17.8   0.0     0.0044   17.4   0.0    1.4  1  AAA_16        AAA ATPase domain
     0.0062   16.3   0.0     0.0081   15.9   0.0    1.1  1  AAA_15        AAA ATPase domain
  ------ inclusion threshold ------
      0.018   15.0   0.2       0.04   13.8   0.2    1.6  1  NACHT         NACHT domain
      0.049   13.9   1.0       0.24   11.7   1.0    2.0  1  AAA_22        AAA domain
       0.06   12.7   0.2       0.36   10.2   0.1    1.9  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.063   13.0   0.0       0.21   11.3   0.0    1.8  2  AAA_30        AAA domain
      0.097   12.4   0.2       0.86    9.3   0.0    2.0  2  IstB_IS21     IstB-like ATP binding protein
       0.17   11.3   0.0       0.27   10.7   0.0    1.6  1  SMC_N         RecF/RecN/SMC N terminal domain
       0.19    9.2   0.2       0.25    8.8   0.2    1.1  1  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   7.2e-35   9.3e-32       1     136 [.      17     161 ..      17     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 7.2e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren...........esdeeiek 87 
                 l+ +s+++k+ge++ ++G+nG GK+tLlk+l+gl   ++Ge++++ + ++  ++++++++ ++++pq  ++fp+ltv+en           ++++ +e+
  EHU02253.1  17 LRGLSFEVKQGEVTCLLGRNGVGKTTLLKCLMGLIPAKSGEVRWQRNIINGrKPHQRVQAGMAYVPQGREIFPRLTVEENllmglsrfsssQAKQVPEE 115
                 6789*****************************************98888889**********************************887666666888 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + + +    + +++   ++  LSgGq+q +a+ ral ++p+ll+lDEpt
  EHU02253.1 116 IYQLFPVLFDMKSR---RGGDLSGGQQQQLAIGRALTSRPQLLILDEPT 161
                 88888887755444...47*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     5e-10   6.3e-07       1      84 [.      29     102 ..      29     131 .. 0.85
   2 !   15.6   0.0   8.4e-06     0.011     236     287 ..     133     181 ..     129     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 5e-10
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv...e 84 
                 +++l G+Ng+GK++LL++l +l            ++ ++g+ r++++ ++++ p ++++ +    + qg ++  +l++e++ +   +
  EHU02253.1  29 VTCLLGRNGVGKTTLLKCLMGL------------IPAKSGEVRWQRNIINGRKPHQRVQAGMA-YVPQGREIFPRLTVEENLLmglS 102
                 699****************877............9****************************.***********999999985443 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8.4e-06
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 +lS G+++ la+  al +++    ll++DEp  g+ P++++++  ++++l++
  EHU02253.1 133 DLSGGQQQQLAIGRALTSRP---QLLILDEPTEGIQPSVIKEIGLVIRQLAQ 181
                 78999999966666677666...9********************99988877 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.9e-07   0.00049      93     132 ..      20      60 ..      11      75 .. 0.85
   2 ?   -1.5   0.0       1.6     2e+03      27      43 ..     193     209 ..     174     214 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.9e-07
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  l+ ++k+ ++++l+G  GvGK+tL++ l++   +k gev+ 
   EHU02253.1  20 LSFEVKQgEVTCLLGRNGVGKTTLLKCLMGLIPAKSGEVRW 60 
                  556666669*********************99999999975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
                  TTT--HHHHHHHHHHHH CS
  RsgA_GTPase  27 epelslnlldrfLvlae 43 
                    ++  +l dr+Lv+  
   EHU02253.1 193 FYDFAADLADRYLVMSR 209
                  35899999999999865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.9e-07   0.00088      10      39 ..      15      47 ..       2      52 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.9e-07
      AAA_23 10 f..rdqeidFsk.gltlItGpNGaGKTTildAi 39
                +  r+ +++ ++  +t++ G NG GKTT+l ++
  EHU02253.1 15 HilRGLSFEVKQgEVTCLLGRNGVGKTTLLKCL 47
                34466777775536*****************98 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06    0.0023      14      46 ..      19      51 ..      14      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.8e-06
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqalL 46
                g ++e+++ ++t l G++G+GK+Tll  ++ l+
  EHU02253.1 19 GLSFEVKQGEVTCLLGRNGVGKTTLLKCLMGLI 51
                5567888666***************97776655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.5e-06    0.0044      20      88 ..      25      99 ..       3     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd....ggif....lrgkcdql..esaipysa.laqalareellrqllde 88
                ++g  e++ l G  GvGK++l+++l+  + ++    +  +    ++g+  +   +++++y++   +++ r   +++ l +
  EHU02253.1 25 KQG--EVTCLLGRNGVGKTTLLKCLMGLIPAKsgevR--WqrniINGRKPHQrvQAGMAYVPqGREIFPR-LTVEENLLM 99
                344..78899****************98888855331..2334444444433456668886655555544.333333333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.3e-06    0.0081      17      44 ..      22      48 ..      17      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.3e-06
      AAA_15 17 veidlseeltvliGkNnsGKSsileald 44
                +e++  e +t+l G+N++GK+++l+ l 
  EHU02253.1 22 FEVKQGE-VTCLLGRNGVGKTTLLKCLM 48
                5566556.****************9985 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.1e-05      0.04       2      22 ..      29      49 ..      28      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                + +l G++G+GKTtLl+ l+ 
  EHU02253.1 29 VTCLLGRNGVGKTTLLKCLMG 49
                689*************99986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   0.00019      0.24       4      30 ..      26      52 ..      23     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqld 30
                +  ++++ G  G+GKTtll+ l+   +
  EHU02253.1 26 QGEVTCLLGRNGVGKTTLLKCLMGLIP 52
                567899**************9987654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00028      0.36      26      52 ..      31      57 ..       7      76 .. 0.83
   2 ?    0.4   0.0      0.28   3.5e+02      45     122 ..      87     168 ..      80     201 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
  Mg_chelatase 26 llvGppGsGKtmlakrlpsllpplsee 52
                   l+G  G GKt l k+l++l+p+ s e
    EHU02253.1 31 CLLGRNGVGKTTLLKCLMGLIPAKSGE 57
                  689*******************97755 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
  Mg_chelatase  45 llpplseeeal..evakiasvagkkeeekllkrrpfraphhsaskaalvGggs.kpkpGeislahnGvLfLDElpe.fkrkv 122
                   ++p+l+ ee l    ++ +s + k+  e++++  p     +s     l Gg++ +   G    ++  +L+LDE +e ++ +v
    EHU02253.1  87 IFPRLTVEENLlmGLSRFSSSQAKQVPEEIYQLFPVLFDMKSRRGGDLSGGQQqQLAIGRALTSRPQLLILDEPTEgIQPSV 168
                   6677776665411445666666667777777777777777777777888887757788888888899999999776345555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.21      18      49 ..      27      58 ..      22      77 .. 0.86
   2 ?   -1.1   0.0         1   1.3e+03      87      96 ..     150     159 ..     123     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrv 49
                  v++l G+ G GKtt+lk l  ++ a+ g+v
  EHU02253.1 27 GEVTCLLGRNGVGKTTLLKCLMGLIPAKSGEV 58
                4599***************9999998886555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
      AAA_30  87 epgtllivDE 96 
                 ++ +lli DE
  EHU02253.1 150 SRPQLLILDE 159
                 2235555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00067      0.86      38      69 ..      17      50 ..      13      64 .. 0.73
   2 ?    0.9   0.0      0.25   3.2e+02     104     117 ..     147     160 ..     132     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00067
   IstB_IS21 38 Latlsf.iekkenivllGpsGvGKshla.ialgv 69
                L++lsf +++ e  +llG  GvGK+ l  + +g 
  EHU02253.1 17 LRGLSFeVKQGEVTCLLGRNGVGKTTLLkCLMGL 50
                6778886889999***********9865144554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
   IstB_IS21 104 krllkvdllilDdl 117
                 +   +++llilD+ 
  EHU02253.1 147 ALTSRPQLLILDEP 160
                 3456899*****94 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.27      25      72 ..      28      72 ..      18     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
                SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskeka 72
                ++t+++G+NG GK+ ll  +   +G   ak+   +  +++i+ +k ++
  EHU02253.1 28 EVTCLLGRNGVGKTTLLKCL---MGLIPAKSGEVRWQRNIINGRKPHQ 72
                689**************999...5555555545555556666644444 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0002      0.25       5      36 ..      14      46 ..      13      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0002
     DUF3584  5 sf.lkGrvaeldldghtnieGtNaaGKTtLlrL 36
                s+ l+G   e++  + t + G N++GKTtLl+ 
  EHU02253.1 14 SHiLRGLSFEVKQGEVTCLLGRNGVGKTTLLKC 46
                5657788889999999*************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1755.07
//
Query:       EHU02254.1  [L=263]
Description: ATP-binding component of an ABC superfamily urea transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-30  104.2   0.0    1.2e-29  103.5   0.0    1.3  1  ABC_tran      ABC transporter
    2.4e-09   37.4   0.4    4.4e-05   23.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.6e-07   30.4   0.1    4.5e-07   29.6   0.1    1.4  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    6.3e-07   29.0   0.0    2.8e-06   27.0   0.0    1.8  1  SMC_N         RecF/RecN/SMC N terminal domain
    1.3e-06   29.0   0.7    2.9e-06   27.9   0.2    1.6  2  AAA_23        AAA domain
    6.3e-05   22.8   0.0     0.0001   22.2   0.0    1.3  1  AAA_15        AAA ATPase domain
    0.00057   19.6   0.0     0.0011   18.6   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
    0.00066   20.0   0.7       0.02   15.1   0.7    2.2  1  AAA_22        AAA domain
     0.0015   18.3   0.0     0.0032   17.2   0.0    1.6  1  AAA_30        AAA domain
     0.0067   16.4   0.0      0.012   15.6   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.014   15.8   0.1      0.022   15.1   0.1    1.4  1  AAA_16        AAA ATPase domain
      0.018   14.7   0.0      0.087   12.5   0.0    1.9  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.02   14.5   0.0        0.1   12.1   0.0    1.9  2  AAA_27        AAA domain
       0.04   13.8   0.0      0.055   13.4   0.0    1.2  1  ATPase_2      ATPase domain predominantly from Archaea
      0.052   12.8   0.0      0.078   12.2   0.0    1.2  1  DUF2813       Protein of unknown function (DUF2813)
      0.057   13.6   0.0       0.11   12.6   0.0    1.5  1  AAA_33        AAA domain
        0.1   13.0   0.1       0.33   11.4   0.1    2.1  1  AAA           ATPase family associated with various cellular 
       0.12   11.9   0.0       0.21   11.1   0.0    1.4  1  GTP_EFTU      Elongation factor Tu GTP binding domain
       0.22   10.1   0.0       0.27    9.8   0.0    1.1  1  AAA_13        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   1.3e-32   1.2e-29       1     136 [.      38     192 ..      38     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 1.3e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.qeleslrkeigvlpqepqlfpeltvren.................. 79 
                 l+n+sl++  ge+  i+G+nGaGK+tL+ +++g+++p+ G++ +d +k+l    + e++r+ ig  +q+p++f+ ltv en                  
  EHU02254.1  38 LNNLSLQIGVGELRCIIGPNGAGKTTLMDVITGKTRPDTGQVIYDqDKNLIAlSPVEIARSGIGRKFQKPTVFEALTVFENleialkttktvwaslrar 136
                 79****************************************99965555557********************************************** PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    +++++i+++l+ l+l+  +++++      LS+Gqkq +++ ++l+++p llllDEp 
  EHU02254.1 137 ldsAQRDRIDEILTLLQLSAARQRPA----GLLSHGQKQFLEIGMLLVQEPHLLLLDEPA 192
                 99988999************999999....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.7e-08   4.4e-05       3      63 ..      52     113 ..      52     134 .. 0.67
   2 !   12.5   0.1    0.0001     0.095     207     269 ..     132     194 ..     117     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.7e-08
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.drdvegltdelsggggirkipslldlydpeipfefeie 63 
                 ++iGpNg+GK++L+d + +  r   + v+ ++d++    ++ +i+++  ++ + +p++fe  
  EHU02254.1  52 CIIGPNGAGKTTLMDVITGKTRPdTGQVIYDQDKNLIALSPVEIARSGIGRKFQKPTVFEAL 113
                 59***************665444666666666666666666666666666666666666554 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0001
      AAA_21 207 eliasvderlrer...gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEng 269
                  l a+ d ++r+r    +++l  +  +++pa  lS G+k++l +  +l + +    lll+DEp +g
  EHU02254.1 132 SLRARLDSAQRDRideILTLLQLSAARQRPAGLLSHGQKQFLEIGMLLVQEP---HLLLLDEPAAG 194
                 55555666666666669999999999***************77777777777...89******776 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   4.8e-10   4.5e-07       2      23 .]     241     262 ..     240     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.8e-10
  BCA_ABC_TP_C   2 vIAeGtPaEvrndPrVieAYLG 23 
                   v+AeG+  Ev+++++Vi++YLG
    EHU02254.1 241 VLAEGSLREVQANEQVIDVYLG 262
                   8********************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.9e-09   2.8e-06       5     213 ..      30     237 ..      26     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.9e-09
                 EEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE..........SSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxx RF
       SMC_N   5 leienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk..........lkie 93 
                 ++ e+F+ +++ + ++ + + + +i+GpNG+GK+ l+d i    G++     r  ++ ++i+  ++k+ +    vei  +  ++k          ++ e
  EHU02254.1  30 VTFEGFRALNNLSLQIGVGE-LRCIIGPNGAGKTTLMDVI---TGKT-----R-PDTGQVIYD-QDKNLIALSPVEIARSGIGRKfqkptvfealTVFE 117
                 56789999976666666665.99*****************...5632.....3.345566776.66666667777776544444433333334333334 PP

                 SSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  94 keevsisrrvkrkgeseykingkevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek 186
                 + e+ +++++    + + +++  ++++  + e+l   ++s        lLS G+k+ + + +l+    v+   l llDe +a + ++++   ael+++ 
  EHU02254.1 118 NLEIALKTTKTVWASLRARLD--SAQRDRIDEILTLLQLSAArqrpagLLSHGQKQFLEIGMLL----VQEPHLLLLDEPAAGMTDAETDYTAELFRSL 210
                 444444444444444444444..44455555555555555446668889************995....5666799************************ PP

                 CTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 187 sknaQfivislreemlekadklvgvtk 213
                   +  ++v+ ++ +++e     v v +
  EHU02254.1 211 AGKHSLMVVEHDMGFVETIADHVTVLH 237
                 ****************99988887766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   3.1e-09   2.9e-06       2      40 ..      30      69 ..      29      72 .. 0.90
   2 ?   -1.5   0.0       3.1   2.9e+03     143     166 ..     118     141 ..      70     171 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 3.1e-09
      AAA_23  2 LkienfrsfrdqeidFsk.gltlItGpNGaGKTTildAik 40
                ++ e+fr +++ +++ +   l +I+GpNGaGKTT++d i+
  EHU02254.1 30 VTFEGFRALNNLSLQIGVgELRCIIGPNGAGKTTLMDVIT 69
                6899********99996637*****************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
      AAA_23 143 feefelkdkkerleelekeleele 166
                 + e++lk++k  +++l+  l+ ++
  EHU02254.1 118 NLEIALKTTKTVWASLRARLDSAQ 141
                 333344555554444444444433 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.1e-07    0.0001       6      43 ..      30      68 ..      28      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-07
      AAA_15  6 ikikNFRslkdveidlsee.ltvliGkNnsGKSsileal 43
                ++ + FR+l + ++++    l ++iG+N++GK+++++++
  EHU02254.1 30 VTFEGFRALNNLSLQIGVGeLRCIIGPNGAGKTTLMDVI 68
                78999******766665555****************998 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06    0.0011      18      43 ..      44      69 ..      34      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
      AAA_29 18 eidlkgatlltGpsGsGKSTllDAiq 43
                +i + +   ++Gp+G+GK+Tl+D i+
  EHU02254.1 44 QIGVGELRCIIGPNGAGKTTLMDVIT 69
                555555778**************875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.7   2.2e-05      0.02       9     102 ..      52     193 ..      48     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.............................................erpevv..fvtlpsstsskdllrel 60 
                 +++G+ G+GKTtl+  ++ +   +++  +                                             +  ++v  +  +  ++ ++      
  EHU02254.1  52 CIIGPNGAGKTTLMDVITGKT--RPDTGQviydqdknlialspveiarsgigrkfqkptvfealtvfenleialKTTKTVwaSLRARLDSAQR------ 142
                 79***************9997..3334446678777788887777777777777755555544444444444443333333344444444444...... PP

      AAA_22  61 lralglelka.............erlsseellealeqalrarav.....ielliiDEaqh 102
                          +             +r++   ll++ ++++ + ++     ++ll++DE   
  EHU02254.1 143 ---------DrideiltllqlsaARQRPAGLLSHGQKQFLEIGMllvqePHLLLLDEPAA 193
                 .........244445555555555699999999999999999999999999999999555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.4e-06    0.0032      20     101 ..      50     197 ..      43     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.4e-06
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g.......grviglAptgkaAkvLa...............eelgieastiakllkrlk.............. 81 
                 + ++ Gp G+GKtt++ +++   + + g       +++i+l+p + a   ++               e+l+i+ +t++ ++ +l+              
  EHU02254.1  50 LRCIIGPNGAGKTTLMDVITGKTRPDtGqviydqdKNLIALSPVEIARSGIGrkfqkptvfealtvfENLEIALKTTKTVWASLRarldsaqrdridei 148
                 7899***************98888885688888888999999999998888855555555555555546666666665555555566667777777777 PP

      AAA_30  82 ...........................grarlepgtllivDE..agmvd 101
                                            g+  +++ +ll+ DE  agm+d
  EHU02254.1 149 ltllqlsaarqrpagllshgqkqfleiGMLLVQEPHLLLLDEpaAGMTD 197
                 7777777777777777777777777765555566677777776666664 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.012      99     132 ..      48      81 ..      16      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                  TSEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevse 132
                  +++ +++G+ G+GK+tL+++++++++  tg+v  
   EHU02254.1  48 GELRCIIGPNGAGKTTLMDVITGKTRPDTGQVIY 81 
                  37889*******************9999999865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   2.3e-05     0.022      25     136 ..      49     161 ..      35     219 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql....esaipysalaqalareellrqllde.................aesaeleawrekle 102
                 el  ++G+ G GK++l++ +    + d g +++ + + l    + +i++s + + + + +++++l                    +++++ +a r++++
  EHU02254.1  49 ELRCIIGPNGAGKTTLMDVITGKTRPDTGQVIYDQDKNLialsPVEIARSGIGRKFQKPTVFEALT-VfenleialkttktvwasLRARLDSAQRDRID 146
                 555689***************999999999999999999544434455566666666655555553.32333444444444444433444444444444 PP

      AAA_16 103 eala.....avpelagaeasrllellkrllallsrderp 136
                 e l+     a                         ++rp
  EHU02254.1 147 EILTllqlsA------------------------ARQRP 161
                 4444443322........................32332 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.2e-05     0.087       2      46 ..      35      81 ..      34     176 .. 0.85
   2 ?    0.5   0.0      0.44   4.1e+02      96     117 ..     203     225 ..     178     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.2e-05
                 SHHHHHH.S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEE CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  ATP-synt_ab  2 irvlDal.fpivqGqrtlipgafgvGktvisqslskqsnsdd.aiiy 46
                  r+l+ l + i+ G+  +i+g +g Gkt++++ ++ +++ d+  +iy
   EHU02254.1 35 FRALNNLsLQIGVGELRCIIGPNGAGKTTLMDVITGKTRPDTgQVIY 81
                 6666655367899*********************9998777656666 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.44
                  HHHHHHH.TTSEEEEEEETHHHH CS
                  xxxxxxx.xxxxxxxxxxxxxxx RF
  ATP-synt_ab  96 lAEyfrd.qgknvlliadslsrw 117
                  +AE fr   gk+ l++++    +
   EHU02254.1 203 TAELFRSlAGKHSLMVVEHDMGF 225
                  6999**9999**99999765555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011       0.1      19      46 ..      41      68 ..      29      70 .. 0.79
   2 ?   -0.7   0.0      0.96   9.1e+02     134     161 ..     192     219 ..     187     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAi 46
                l+++ +  +l  i+GpN AGK+t+++ i
  EHU02254.1 41 LSLQIGVGELRCIIGPNGAGKTTLMDVI 68
                4555557899**************9876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.96
      AAA_27 134 GealleaegelgqlLfeasaGlaslrev 161
                 +  + +ae + +  Lf + aG +sl  v
  EHU02254.1 192 AAGMTDAETDYTAELFRSLAGKHSLMVV 219
                 667899999999*********9998765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.8e-05     0.055      21     114 ..      49     141 ..      36     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.8e-05
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekik 114
                 e   i Gp g GKt+L+  i  + +    +viy  + + +++s ++   +    +k+ + ++ +a+  +e  ei  +++k v++++ + l++ +
  EHU02254.1  49 ELRCIIGPNGAGKTTLMDVITGKTRPDTGQVIYDQDKNLIALSPVEIA-RSGIGRKFQKPTVFEALTVFENLEIALKTTKTVWASLRARLDSAQ 141
                 667899***************999998889**9998888888877766.222333333333344444444444444666666666666555555 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.3e-05     0.078       7      42 ..      31      68 ..      23      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.3e-05
     DUF2813  7 eisGFRGinrLSlsl..eentvLiGENaWGKSSLldAL 42
                   GFR +n LSl++   e+  +iG N  GK  L+d +
  EHU02254.1 31 TFEGFRALNNLSLQIgvGELRCIIGPNGAGKTTLMDVI 68
                457*********986226999**************976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012      0.11       4      72 ..      53     146 ..      50     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdt.............................lrrrlfgtdqqsktdytrvldrlyqilnelarkalsa 69 
                 ++G++G+GK+tl + +  k+      v+ ++d+                             +    f++    ++   + ++ +++ l++++++a++ 
  EHU02254.1  53 IIGPNGAGKTTLMDVITGKTRpdtgQVIYDQDKnlialspveiarsgigrkfqkptvfealtV----FEN----LEIALKTTKTVWASLRARLDSAQRD 143
                 79************9988877788777788888888888888877777777666664432221....212....2222233344444444444554544 PP

      AAA_33  70 grn 72 
                 +++
  EHU02254.1 144 RID 146
                 444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00035      0.33       2      23 ..      52      77 ..      51     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
                EEESSTTSSHHHHHHHHHHHH....T CS
         AAA  2 llyGppGtGKTllakavakel....g 23
                +++Gp G GKT+l+  +  ++    g
  EHU02254.1 52 CIIGPNGAGKTTLMDVITGKTrpdtG 77
                689*************9999633331 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.21       7      51 ..      52      96 ..      50     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
                EEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHH CS
    GTP_EFTU  7 giighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeEre 51
                +iig   +GKtTL+d ++ kt  ++ +   +++++ +   + E +
  EHU02254.1 52 CIIGPNGAGKTTLMDVITGKTRPDTGQVIYDQDKNLIALSPVEIA 96
                89****************999887765555555556665555555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00028      0.27      21      41 ..      53      73 ..      44     131 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
      AAA_13 21 iYGwNGaGKTtLSrllrslel 41
                i G NGaGKTtL  ++   ++
  EHU02254.1 53 IIGPNGAGKTTLMDVITGKTR 73
                78***********99998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.30s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 1916.26
//
Query:       EHU02255.1  [L=357]
Description: permease component of an ABC superfamily urea transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-41  141.0  33.3    3.9e-41  141.0  33.3    1.7  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
      0.027   14.6   0.4      0.027   14.6   0.4    3.2  3  FxsA          FxsA cytoplasmic membrane protein


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3     0.098   8.8e+02      37      63 ..      18      44 ..      15      46 .. 0.79
   2 !  141.0  33.3   4.4e-45   3.9e-41       4     267 ..      50     339 ..      47     340 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.098
  BPD_transp_2 37 malGayvaalllalllsllllallval 63
                  +++Ga+v++ll+  +l+ll+++ ++a+
    EHU02255.1 18 LGIGAVVTLLLIMPFLALLPASHPLAI 44
                  568899999999999988888888876 PP

  == domain 2  score: 141.0 bits;  conditional E-value: 4.4e-45
  BPD_transp_2   4 nlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl........................lllallvallvgaavglllgll 76 
                    l+ +++ +a +A++l lv+g+aG+++lghg f+alG+y+++++l ++ s                         +++al + +lv ++++l++g+ 
    EHU02255.1  50 TLVGKILCYAVVAVALDLVWGYAGLLSLGHGLFFALGGYAMGMYLMRQASGdslpafmtflswdrlpwfwagtqhFAWALCLIVLVPGLLALVFGFF 146
                   67778899*****************************************99********************************************** PP

  BPD_transp_2  77 vlrlkvdeliitllllsvlv..gltlllltgitsgvkgqssvkellgfagallsflsaviv..llalllvlavllllrrtrfGralravgeneeaar 169
                     r k++ +++++++  + +  +l+++ ++++++g++g +++++llgf+ ++ ++  + +   +l+ll+ l++ + l r++fGr l av++ e+   
    EHU02255.1 147 AFRSKIKGVYFSIMTQALTYagMLLFFRNETGFGGNNGFTGFTTLLGFSVTSTNTRIGLFIatVLLLLASLVLGFALARSKFGRVLTAVRDAENRLM 243
                   *********9999976665411445557899*****************9999988877777789999****************************** PP

  BPD_transp_2 170 alGinvkrvklltfvisgalAglaGallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgalli 265
                   + G++++ +kl+++ +s++l glaGal++ + g+i+p  ++++ +++a ++v lGg g+l+g+++Ga i+  +ks+++ ++   +e++ ++lg+++i
    EHU02255.1 244 FCGYDPRGFKLFVWTLSAMLCGLAGALYVPQVGIINPsEMSPTNSIEAAIWVALGGRGTLIGPLLGAAIVNGAKSVFTVAF---PEYWLFFLGMMFI 337
                   ***************************************************************************888887...89*********** PP

  BPD_transp_2 266 lv 267
                   lv
    EHU02255.1 338 LV 339
                   98 PP

>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.0      0.94   8.5e+03      21      31 ..      20      30 ..      16      36 .. 0.56
   2 ?    7.8   4.5    0.0004       3.5       5      96 ..      59     150 ..      55     163 .. 0.85
   3 ?   14.6   0.4     3e-06     0.027      19      58 ..     201     241 ..     189     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.94
        FxsA 21 iGvlatllllv 31
                iG+++tlll++
  EHU02255.1 20 IGAVVTLLLIM 30
                44555544443 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0004
        FxsA   5 llpvlEilllvlvasaiGvlatllllvltallGallvrrqgrralrrlqeklaqgelpaeelldglllllggvLLllPGfvtdvlGlllllP 96 
                 +++++ + l++  a++++++  l+  ++  ++G++l+r++    l ++ + l+ ++lp   ++ + + ++  +++l+PG++  v+G++ +  
  EHU02255.1  59 AVVAVALDLVWGYAGLLSLGHGLFFALGGYAMGMYLMRQASGDSLPAFMTFLSWDRLPWFWAGTQHFAWALCLIVLVPGLLALVFGFFAFRS 150
                 5566666678888999999999*************************************99998888888889999**********997765 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 3e-06
        FxsA  19 saiGvl.atllllvltallGallvrrqgrralrrlqeklaq 58 
                 + iG++ at+lll+++ +lG++l+r++  r+l++++++ ++
  EHU02255.1 201 TRIGLFiATVLLLLASLVLGFALARSKFGRVLTAVRDAENR 241
                 557754279**********************9999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2767.39
//
Query:       EHU02256.1  [L=521]
Description: permease component of an ABC superfamily urea transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-55  186.2  37.0    9.4e-55  185.6  37.0    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe
    1.7e-08   34.7   6.9    2.6e-05   24.5   0.4    2.7  2  HEAT_2        HEAT repeats
    0.00086   19.4   2.3        5.3    7.6   0.0    4.6  4  HEAT          HEAT repeat


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6  37.0   1.6e-58   9.4e-55       2     267 ..     229     504 ..     228     505 .. 0.93

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 1.6e-58
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl........lllallvallvgaavglllgllvlrlkvdeliitll 90 
                    +++l+l++il++aAlGla+++g++Gvin +hg++++lGay+++l+++l+++         +llal+va+l+ aa+g++l++ ++r  + +++ tll
    EHU02256.1 229 AFSGLSLGSILLLAALGLAITYGLLGVINMAHGEMLMLGAYATWLVQNLFQQFapqyiawyPLLALPVAFLMTAAIGMALERTIIRHLYGRPLETLL 325
                   5889***********************************************99****************************************9999 PP

  BPD_transp_2  91 ....llsvlvgltlllltgitsgvkgqssvkellgf.agallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvkllt 182
                       ++++l+ l+ +l + +   v+++++ ++ l++ +   l++   ++ l++++++++ +lll+rtr+G+++rav++n+ +a++ G++++rv++l+
    EHU02256.1 326 atwgISLMLIQLVRMLFGAQNLEVANPAWLSGGLQVlPNLVLPWNRIAVILFVVFVLILTWLLLNRTRLGMNVRAVTQNRAMADCCGVPTGRVDMLA 422
                   66667777777777777778888888888888888735556788888888*********************************************** PP

  BPD_transp_2 183 fvisgalAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   f +++++Agl G++l++l +++p   g+g++++++++vvlGg+g+l+gtv++al +g+++++l  ++g+   l ++l+ +l++l+
    EHU02256.1 423 FGLGSGIAGLGGVALSQLGNVGP-ELGQGYIIDSFLVVVLGGVGQLAGTVVAALGLGILNKVLEPQMGA--VLGKILILVLIVLF 504
                   ******************99999.*************************************99999988..89999999999876 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.7   1.9e-05      0.11       7      58 ..     111     162 ..     104     166 .. 0.87
   2 !   24.5   0.4   4.4e-09   2.6e-05       8      60 ..     164     218 ..     158     229 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
      HEAT_2   7 alendpdpevrraairaLgrignpealpaLvell.ededpavRraaaeaLgai 58 
                 +l  +pd  vr +a+++L + +  ++lp++ + l   +dp v +a a++++ +
  EHU02256.1 111 QL-VSPDAGVRLRAAQQLQNDAAADLLPLIEKRLsVETDPQVHAALAMTAASL 162
                 55.489**************************996799*******99988765 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 4.4e-09
      HEAT_2   8 lendpdpevrraairaLgrignpealpaLvell...ededpavRraaaeaLgaigd 60 
                 l ++  p vr +a++ Lg+  +p +++ L +l      +d+ vR+aaa++L ++++
  EHU02256.1 164 L-TSTQPMVRLRAVKLLGESSDPNTQASLQRLTqpaAEPDETVREAAADSLKQMKS 218
                 4.567777888888888876666554444444422266778888888888877776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.19   1.2e+03       9      24 ..     112     127 ..     103     129 .. 0.82
   2 ?    0.7   0.0      0.14   8.6e+02       1      20 [.     135     155 ..     135     158 .. 0.74
   3 !    6.0   0.0    0.0029        17       9      26 ..     164     181 ..     159     182 .. 0.90
   4 !    7.6   0.0   0.00089       5.3      12      27 ..     201     216 ..     192     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
                 HT-SSHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaL 24 
                 l +p++ VR  Aa+ L
  EHU02256.1 112 LVSPDAGVRLRAAQQL 127
                 6689999******977 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHT-.SSHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaA 20 
                 llPl+ k ls  ++p+V +a 
  EHU02256.1 135 LLPLIEKRLSVeTDPQVHAAL 155
                 89******9654777776665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0029
                 HT-SSHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLga 26 
                 l+++ p VR  A+k Lg+
  EHU02256.1 164 LTSTQPMVRLRAVKLLGE 181
                 7999************96 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00089
                 SSHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgal 27 
                 p+  VReaAa +L ++
  EHU02256.1 201 PDETVREAAADSLKQM 216
                 8999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3710.36
//
Query:       EHU02257.1  [L=422]
Description: substrate-binding component of an ABC superfamily urea transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-174  578.7   0.1   4.8e-174  578.5   0.1    1.0  1  Peripla_BP_5  Periplasmic binding protein domain
    8.9e-73  245.9   2.2    1.1e-72  245.6   2.2    1.0  1  Peripla_BP_6  Periplasmic binding protein
     0.0015   17.7   0.0      0.015   14.4   0.0    2.0  2  ANF_receptor  Receptor family ligand binding region
  ------ inclusion threshold ------
       0.13   12.9   0.0        0.3   11.7   0.0    1.6  1  Pex14_N       Peroxisomal membrane anchor protein (Pex14p) co


Domain annotation for each model (and alignments):
>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  578.5   0.1  1.1e-177  4.8e-174       1     362 [.      31     407 ..      31     409 .. 0.97

  Alignments for each domain:
  == domain 1  score: 578.5 bits;  conditional E-value: 1.1e-177
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfY 97 
                   ikvG++hSlsGtmaise+ lkd+al++i+eina+gGvlg+k+e+vvvdpas+w+lfaeka++l+++dkv+vvfGcwtS+sRk+vlpv+eeln+lLfY
    EHU02257.1  31 IKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLFY 127
                   8************************************************************************************************ PP

  Peripla_BP_5  98 pvqYEGeEssknviYtGaapnqqaipavdyllselg..akrvflvGsdyvypretnrilkallkakgg..evvgeeYlplgssdvqkivakikka.. 188
                   pvqYEGeE+s nv+YtGaapnqqaipav+yl+s++g  akr+fl+G+dyvypr+tn+il+a+l++kg+  ++++e Y+p+g sd+q+iv++ik++  
    EHU02257.1 128 PVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSQDGggAKRFFLLGTDYVYPRTTNKILRAFLHSKGVqdKDIEEVYTPFGYSDYQTIVSNIKTFaa 224
                   ***********************************999******************************8889*********************9965 PP

  Peripla_BP_5 189 .kpdvvlstinGdsnvafykelkeagikaekipvvslsvaeeelaaidaealvGhlaawnYfqsvdtpenkafvakfkarv.......gedrvtndp 277
                    ++++v+stinGdsnv+fykel+++gika++ipvv++sv+eeel++id+++lvG+laawnYf+s+d+p+n +fva+++a++        ++ vtndp
    EHU02257.1 225 gGKTAVVSTINGDSNVPFYKELANQGIKATDIPVVAFSVGEEELRGIDTKPLVGQLAAWNYFESLDNPTNAKFVADYRAYAkahnlpnASTVVTNDP 321
                   5699****************************************************************************9777776445669**** PP

  Peripla_BP_5 278 meaayiqvklwaqAvekagstdvekvreallgqelkapeGe.vkidpenhhlsktvrigkikadGqfeivwetkkpvkpdpyskyl 362
                   mea+y+++++waqAvekag+t+v++vr+a++gq++kap+G  +++d++nhhl+k+v+ig+++++Gqf++vw+t+kpv+++p+s y+
    EHU02257.1 322 MEATYVGIHMWAQAVEKAGTTNVDRVRAAMAGQTFKAPDGFtLTMDQTNHHLHKPVMIGEVEENGQFNVVWQTDKPVRAQPWSPYI 407
                   ****************************************999****************************************986 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   2.2   2.4e-76   1.1e-72       1     341 [.      30     386 ..      30     387 .. 0.96

  Alignments for each domain:
  == domain 1  score: 245.6 bits;  conditional E-value: 2.4e-76
                   EEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEE CS
  Peripla_BP_6   1 pikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvi 97 
                   +ik+G   +lsG +a+s ++l + a + ++eiNa+GG++G+k+e v+ D a++    ae+ar+l++qd+v++++g+++s  ++ v++v+++ + +++
    EHU02257.1  30 TIKVGIMHSLSGTMAISETPLKDVALMTIDEINAKGGVLGKKLEPVVVDPASNWPLFAEKARQLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLF 126
                   79*********************************************************************************************** PP

                   ESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTT..SCEEEEEEESSHHHHHHHHHHHHHHHCCTEE..EEEEEEE-TTHHHHHHHHHHHHTTT CS
  Peripla_BP_6  98 gpagltgekcspyvfslgpsysaqasalveylakelg..gkkvalvyadyafgregiaalkaaakaaGge..vvgeepvplgttdfsaqvlqikaag 190
                   +p++++ge+ sp+vf++g+ +++qa  +veyl+++ g  +k+++l+++dy ++r +++ l+a + ++G++  +++e+++p+g++d++++v +ik   
    EHU02257.1 127 YPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSQDGggAKRFFLLGTDYVYPRTTNKILRAFLHSKGVQdkDIEEVYTPFGYSDYQTIVSNIKTFA 223
                   **********************************9877799*****************************************************977 PP

                   -SE...EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--HHHH.... CS
  Peripla_BP_6 191 ada...vllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaayggapppsqfaa.... 280
                   a     v+ +  g++++ ++k++a +G++a  i++v++s++ee+l+++  + + g la+ +yf++ldnp++ +fva+y+a++++ + p+++++    
    EHU02257.1 224 AGGktaVVSTINGDSNVPFYKELANQGIKATDIPVVAFSVGEEELRGIDTKPLVGQLAAWNYFESLDNPTNAKFVADYRAYAKAHNLPNASTVvtnd 320
                   765556****************************************************************************998877777775566 PP

                   ...HHHHHHHHHHHHHHCCTHCCHHHHHHHHHHS-BECCCT.CCBEECTTSBEE--EEEEEE-.TS CS
  Peripla_BP_6 281 ...ggyiaadlllealkaagsltreavraaleslgfdgllg.plkftaedhqasrpvyvvqvd.gg 341
                      ++y+++ ++++a+++ag+++ + vraa+ +++f++++g +l++++++h++++pv + +v+ +g
    EHU02257.1 321 pmeATYVGIHMWAQAVEKAGTTNVDRVRAAMAGQTFKAPDGfTLTMDQTNHHLHKPVMIGEVEeNG 386
                   6658***********************************998899*****************9776 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.4e-06     0.015       5      63 ..      53     111 ..      49     134 .. 0.87
   2 ?    1.1   0.0     0.038   1.7e+02     264     298 ..     314     354 ..     256     385 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-06
                   HHHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCC.CEEEEEE-SSHHHH CS
  ANF_receptor   5 AmklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkg.kvvaviGpssssvs 63 
                   ++ + ++ein+++++l++ kl+  ++d +++  l  e+a ++l++ kv++v+G  +s + 
    EHU02257.1  53 VALMTIDEINAKGGVLGK-KLEPVVVDPASNWPLFAEKARQLLTQdKVAVVFGCWTSVSR 111
                   6789************88.*************************967******8777554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.038
                   CCGSTTCCHHHHH...HHHHHHHHHHHHHHHCHH..........S CS
  ANF_receptor 264 yenegkeqisyqaalmYdaVyllaeAlnkllrkk..........k 298
                   ++  ++ ++     ++Y ++++ a+A++k+++++          +
    EHU02257.1 314 STVVTNDPME----ATYVGIHMWAQAVEKAGTTNvdrvraamagQ 354
                   4444444433....459*************987755555444441 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05       0.3      25      43 ..     184     204 ..     179     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
     Pex14_N  25 kv..aFLesKGLtqeEIeeaL 43 
                 k+  aFL+sKG+++++Iee  
  EHU02257.1 184 KIlrAFLHSKGVQDKDIEEVY 204
                 55559*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2893.77
//
Query:       EHU02258.1  [L=233]
Description: GntR-family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-20   74.2  10.8      2e-20   73.5  10.8    1.4  1  FCD             FCD domain
    1.3e-17   63.2   0.0    3.7e-17   61.7   0.0    1.8  1  GntR            Bacterial regulatory proteins, gntR family
    0.00016   21.2   0.0     0.0025   17.4   0.0    2.5  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00047   20.3   0.0     0.0016   18.6   0.0    1.9  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.003   17.6   0.0       0.73    9.9   0.0    2.6  2  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.025   14.4   0.0      0.073   12.9   0.0    1.7  2  DUF3116         Protein of unknown function (DUF3116)
      0.026   14.5   0.0      0.074   13.0   0.0    1.9  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.027   14.8   0.0       0.16   12.4   0.0    2.2  2  Rrf2            Transcriptional regulator
      0.042   13.8   0.0       0.11   12.5   0.0    1.7  1  HTH_11          HTH domain
      0.097   12.6   0.0       0.43   10.5   0.0    2.1  2  TrmB            Sugar-specific transcriptional regulator TrmB
       0.13   12.6   0.0       0.32   11.4   0.0    1.7  1  FaeA            FaeA-like protein


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5  10.8   1.2e-23     2e-20       1     124 [.      87     210 ..      87     211 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.2e-23
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslae 99 
                 +ly+lR +LE+ea+ + +     +  ++l+el++   eaa+ +d ++++++d+aFH++l++aagn+ +a+++ el +++r +rrl +++++r++++ +e
  EHU02258.1  87 ELYDLRTVLECEAVTRLCALPPTQCADRLRELYQFWCEAAQVEDGKRVSQHDEAFHMTLVAAAGNAEMARIHAELTEKIRIIRRLDFTREDRIAATYRE 185
                 79************************************************************************************************* PP

         FCD 100 HraildAirardadaAraamrrHle 124
                 H +il+Ai+ ++ + Ar++++ H++
  EHU02258.1 186 HAQILRAILLQETRDARQILTGHIA 210
                 ***********************96 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.3e-20   3.7e-17       1      64 []      15      77 ..      15      77 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.3e-20
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                l+e+vy++L++dI + +l+pGd+  se+e+a++++Vsrt+vR+AL  Le+eg+v ++ ++G+ V
  EHU02258.1 15 LAERVYQALKNDIFEFRLMPGDRF-SESEIAERMAVSRTPVRQALFWLEREGYVDVWFRSGWQV 77
                689*********************.************************************987 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0025      21      47 ..      41      67 ..      37      68 .. 0.95
   2 ?    0.7   0.0      0.25     4e+02      27      41 ..     104     118 ..      99     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                +e+Aer  +S+++v++ l  Le+eG++
  EHU02258.1 41 SEIAERMAVSRTPVRQALFWLEREGYV 67
                79************************8 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.25
      HTH_24  27 lglSpstvnrrlkrL 41 
                 + l+p+ +  rl++L
  EHU02258.1 104 CALPPTQCADRLREL 118
                 67999********99 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.9e-07    0.0016      24      54 ..      39      69 ..      35      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.9e-07
                    -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyvey 54
                    + +++aer++vs   V + l  Le++Gyv++
      EHU02258.1 39 SESEIAERMAVSRTPVRQALFWLEREGYVDV 69
                    679**************************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00045      0.73      14      56 ..      18      69 ..      17      69 .. 0.87
   2 ?    4.6   0.1      0.02        33      25      48 ..      95     118 ..      86     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00045
                HHHHHH.........STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 14 rilraL.........araegltaselaerldlskntlsyHLrvLeeagLvev 56
                r+++aL         ++++ ++ se+aer+ +s++ +++ L  Le+ g+v+v
  EHU02258.1 18 RVYQALkndifefrlMPGDRFSESEIAERMAVSRTPVRQALFWLEREGYVDV 69
                57778888888888899****************9999999999999998875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.02
                 B-HHHHHHHHTS-HHHHHHHHHHH CS
      HTH_20  25 ltaselaerldlskntlsyHLrvL 48 
                 l ++++ +++ l+++++ ++Lr+L
  EHU02258.1  95 LECEAVTRLCALPPTQCADRLREL 118
                 6799999***************99 PP

>> DUF3116  Protein of unknown function (DUF3116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.5e-05     0.073      12      57 ..      19      67 ..      10      73 .. 0.79
   2 ?   -3.4   0.0       5.6   9.1e+03       8      32 ..     216     225 ..     202     230 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-05
     DUF3116 12 vLelvkdpnftiknlqleeldeksvkkl...tkneLLytvYWLElkgyi 57
                v ++ k+  f++  +  +++ e++ ++    +++ + ++++WLE +gy+
  EHU02258.1 19 VYQALKNDIFEFRLMPGDRFSESEIAERmavSRTPVRQALFWLEREGYV 67
                6677788888888888888888765443445*****************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.6
     DUF3116   8 lilevLelvkdpnftiknlqleeld 32 
                 + +++L++               l+
  EHU02258.1 216 VRKITLHM---------------LQ 225
                 33333333...............33 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.5e-05     0.074      21      54 ..      37      72 ..      13      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ET CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis..rg 54
                +++  e+A+++ ++r  v ++l  L+reg+++   +
  EHU02258.1 37 RFSESEIAERMAVSRTPVRQALFWLEREGYVDvwFR 72
                7899**************************995523 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.6e-05      0.16      22      56 ..      35      68 ..      28      70 .. 0.89
   2 ?   -1.3   0.1       1.8   2.9e+03      31      52 ..     205     227 ..     181     229 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.6e-05
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvk 56
                +++ +s +eiaer+ +s++ +++ l  L+++g+v 
  EHU02258.1 35 GDR-FSESEIAERMAVSRTPVRQALFWLEREGYVD 68
                455.8889*************************96 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.8
                 HHHHHTS-HHHHHHH.HHHHHHT CS
        Rrf2  31 iaerqnispsyleki.lakLrka 52 
                 +  +  +s+  ++ki l++L++a
  EHU02258.1 205 LTGHIAVSKAEVRKItLHMLQQA 227
                 34456777777777734566665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.6e-05      0.11      14      43 ..      36      65 ..      24      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
      HTH_11 14 gpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                + +s +e+Ae++ vSr+ vr+ +  Le  g
  EHU02258.1 36 DRFSESEIAERMAVSRTPVRQALFWLEREG 65
                448999**************9998888777 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00027      0.43      22      54 ..      37      69 ..      30      80 .. 0.90
   2 ?   -2.1   0.0       2.3   3.7e+03      11      39 ..     187     216 ..     186     224 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00027
                CCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB 22 patadeiaeelgvprskvYevLrsLedkGlVer 54
                + + +eiae+  v+r+ v ++L  Le+ G+V++
  EHU02258.1 37 RFSESEIAERMAVSRTPVRQALFWLEREGYVDV 69
                56789**************************75 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
                 CCHCHHHHHHCCCHHCHHCC.CTTSSCHCH CS
        TrmB  11 akvYlaLlklgpatadeiae.elgvprskv 39 
                 a++  a+l ++  +a++i   ++ v+++ v
  EHU02258.1 187 AQILRAILLQETRDARQILTgHIAVSKAEV 216
                 567778888888888887542455555555 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.32       2      45 ..      24      67 ..      23      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSE CS
        FaeA  2 keeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegki 45
                k++I e+    +     +eiA+ +++s   +R  L  Le+eg +
  EHU02258.1 24 KNDIFEFRLMPGDRFSESEIAERMAVSRTPVRQALFWLEREGYV 67
                677777755546667789***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1673.23
//
Query:       EHU02259.1  [L=1205]
Description: urea carboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-94  316.9   0.0      4e-94  315.1   0.0    1.9  2  CT_A_B           Carboxyltransferase domain, subdomain A and 
    2.8e-60  203.4   0.0    4.9e-60  202.6   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    5.7e-45  153.6   0.0    2.1e-44  151.7   0.0    2.0  2  CT_C_D           Carboxyltransferase domain, subdomain C and 
    2.5e-42  143.9   0.8    5.6e-42  142.8   0.1    2.0  2  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    2.8e-37  127.1   0.0    6.4e-37  126.0   0.0    1.7  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    1.4e-16   60.1   0.0    6.2e-16   58.0   0.0    2.2  2  Biotin_lipoyl    Biotin-requiring enzyme
      2e-08   34.0   0.0      4e-08   33.0   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.4e-08   33.2   0.0     0.0017   18.2   0.1    2.9  2  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00023   21.8   0.1        2.7    8.8   0.0    3.6  3  HlyD_3           HlyD family secretion protein
     0.0013   18.0   0.2       0.19   10.9   0.4    2.4  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
     0.0042   16.5   0.0     0.0081   15.6   0.0    1.4  1  NQRA             Na(+)-translocating NADH-quinone reductase s
     0.0053   16.3   0.0      0.016   14.8   0.0    1.7  2  ATP-grasp        ATP-grasp domain
     0.0066   16.4   0.2      0.023   14.7   0.1    1.9  2  RnfC_N           RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.029   13.8   0.0    1.5  1  ATP-grasp_5      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CT_A_B  Carboxyltransferase domain, subdomain A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.7   2.2e+03      37     101 ..     291     369 ..     286     377 .. 0.60
   2 !  315.1   0.0   3.2e-97     4e-94       1     264 []     472     752 ..     472     752 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.7
                 EEEEESS-EEEEEEESCE.EEEET.............TEEE-SSCEEEE-TT-EEEEEEESSECEEEEEETT-BE---B CS
      CT_A_B  37 pelrfeedavvavtGadl.eatld.............gepvplwepvevkaGdvLklgaakaGlraYLavaGgldvpev 101
                  +l++e++++ +vtG dl e+ l              ++p  +   v++ a+d Lk  +++ G+ + + + + ++v+++
  EHU02259.1 291 TRLQVEHPVTECVTGLDLvECMLRvaadeaidwprlqQAPQGASIEVRLYAEDPLKNFQPSPGVLTHVSFPDDVRVDSW 369
                 5788888888899997431233333344444444432333334444666677777778888888888887777777765 PP

  == domain 2  score: 315.1 bits;  conditional E-value: 3.2e-97
                 GT----S-SSHHHHHHHHHHTTS-TTS-EEEEESC-EEEEESS-EEEEEEESCEEEEETTEEE-SSCEEEE-TT-EEEEEEESSECEEEEEETT-BE-- CS
      CT_A_B   1 lGvprsGamDrlalrlANrlvgNeegaaaLEitlggpelrfeedavvavtGadleatldgepvplwepvevkaGdvLklgaakaGlraYLavaGgldvp 99 
                 +Gvp+sG+mD++a+rlANr+vgN+e+aa+LE+tl+gp+lrf+ +a++a+tGad+ atldg pv++w+p++v+aG++L+lg+a++G+r+YLa+++g+dvp
  EHU02259.1 472 IGVPPSGPMDDYAFRLANRIVGNHESAAGLEFTLQGPTLRFHCAATLALTGADCGATLDGIPVSNWQPITVNAGQTLTLGRAQRGCRCYLAIRNGFDVP 570
                 6************************************************************************************************** PP

                 -BTTB-S-BTTTTBSTTTTS---TT-EEEBSSSTT--S-C........BGGCS---SSCSEEEEEEEE-TTG..CCB-HHHHHHHHHS-EEEECEECSS CS
      CT_A_B 100 evlgSrStdllaglGgleGraLkagdvLplgeaaaaaaaka.......keleaaapeeseeeevrvvpGpqa..dlfteealeallssewtvsaesdRm 189
                 e+lgSrSt+ l+++Gg++Gr+L+  d+Lp+++++ aa ++        + ++a  p++++e+++ v++Gp+   d+ft++a++++++s+w+v+++s+R 
  EHU02259.1 571 EYLGSRSTFSLGQFGGHAGRTLRVADMLPVSQPSLAACTTPapvsapqALSPALIPTYTSEWHIGVLYGPHGapDFFTQAAIDEFFASDWQVHYNSNRL 669
                 **********************************9998877999999888999999******************************************* PP

                 EEEE..........ES.GG.SSCS.TEEEEEE--TTEEEE-CTTEEEEE-TTS-SEEEEEEEEEE-GGGHHHHTT--TTSEEEEEE CS
      CT_A_B 190 GvrL..........dG.eaglerkesellsegvvlGaiqvppdgqpivllaDhqttGGYpkiatvisadldklaQlrpgdkvrFea 264
                 GvrL          +G eagl++  s++++  +++Gai++ +++ p++l++D++++GG+++++t+++a+l+k++Q++pgdk+rF++
  EHU02259.1 670 GVRLvgpkpawtraNGgEAGLHP--SNVHDCEYAIGAINF-TGDFPVILTHDGPSLGGFVCPVTIAKAELWKVGQVKPGDKIRFHP 752
                 ****9999999888666899999..9**************.*******************************************85 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.0   3.8e-63   4.9e-60       2     207 ..     116     320 ..     116     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 3.8e-63
                  HHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEE CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvev 99 
                  k++a+e++++++vp+ p+++   +tl++al++a++igyPv++k+++g+GG G   + +   l+++ ++ ++  +  f+++ v++e+ +++ +++Ev++
   EHU02259.1 116 KHRARELAAQAGVPMTPGTPL-LNTLDDALSAAESIGYPVMLKSTAGGGGIGLTRCADAGALRNAWESVRRLGEQFFSDAGVFLERCIDHARHVEVQI 212
                  67899***************9.9*************************************************************************** PP

                  EEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHH CS
  CPSase_L_D2 100 lrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvk 197
                    D kg+v+ ++er++slq+r+qkv+e+ P+  L +++r al ++av++ + v++++agtve+++d++++ +y++EvNtRl+ve++++e++TGldlv+
   EHU02259.1 213 FGDGKGTVVALGERDCSLQRRNQKVVEETPALCLPAATRAALLASAVRLGEVVNYRSAGTVEYIYDAQQDAFYFLEVNTRLQVEHPVTECVTGLDLVE 310
                  ************************************************************************************************** PP

                  HHHHHHTT-- CS
  CPSase_L_D2 198 eaakialgek 207
                   ++++a+ e 
   EHU02259.1 311 CMLRVAADEA 320
                  ******9876 PP

>> CT_C_D  Carboxyltransferase domain, subdomain C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3   4.2e+03      86     108 ..     630     652 ..     615     675 .. 0.79
   2 !  151.7   0.0   1.7e-47   2.1e-44       3     198 ..     810    1030 ..     808    1033 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.3
                 -EEEEEEEESTTT-TTHHHHHHH CS
      CT_C_D  86 rlveipvcYdgevgpDLeevael 108
                   ++i v+Y+ + +pD  + a++
  EHU02259.1 630 SEWHIGVLYGPHGAPDFFTQAAI 652
                 3599******9999998777666 PP

  == domain 2  score: 151.7 bits;  conditional E-value: 1.7e-47
                  EEEETTTEEEEEE-.SS--HHHHHHHHHHHHHHHT..STTECEEEE-SSEEEEEESCCCCHHHHHH.HHHHHHHH...---------EEEEEEEEST CS
      CT_C_D    3 irplGdeallvefg.eeisealskrvlalaaalrakalpgvvelvpayrsllvefdpealdaaellaalkallee..aeeeaaeesrlveipvcYdg 96  
                  +r++Gd+++l+e+g + +++al+ rv+ l+a+lr+++++g+ el p++rsl++++d  +l++++l+++l a ++   + ++ + +sr+v +p+++++
  EHU02259.1  810 YRQAGDKYILIEYGdNVLDLALRLRVHLLMASLRERPVDGIEELSPGVRSLQIRYDSLTLSQSQLMSELLAREAMlgDVSTLKVPSRIVWMPMAFED 906 
                  799***********6679***************************************************7777777799****************** PP

                  TT-T...................THHHHHHHHTS-.HHHHHHHHHHS-EEEEEE-.SSTT-EEE----GG..G-----SS--S-B-TTEEEEETTEE CS
      CT_C_D   97 evgp...................DLeevaelngls.veevirlhtaaeyrvaflG.fapGfaylggldpr..lavpRrasPrtrvpagsVgiageqt 170 
                  +++                    +++++ ++ngls  e+v +++++a+y++++lG ++ G++++ ++dpr  l  ++++++rt +++g+Vgi+g+++
  EHU02259.1  907 SATLgaveryketvrasapwlpnNVDFIQRINGLSdREQVRDTLFNASYLILGLGdVYLGAPCAVPIDPRhrLLSSKYSPARTFTAEGTVGIGGMYM 1003
                  *999*******************************99********************************99999*********************** PP

                  EEE-S-B---SEEEEEE-S-SB-TTSSS CS
      CT_C_D  171 giyplesPGGWqliGrTplplfdpdrep 198 
                  +iy ++sPGG+ql+GrT lp++++  ++
  EHU02259.1 1004 CIYGMDSPGGYQLVGRT-LPIWNTFLKN 1030
                  *****************.****985554 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.1   4.4e-45   5.6e-42       1     109 [.       1     109 [.       1     110 [. 0.98
   2 ?   -2.9   0.1         8     1e+04      11      46 ..    1067    1102 ..    1066    1139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 4.4e-45
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    ++++vlianrGeiA+r ir++++lgi++vav+s++d+n++hv+ead av lg+++as+sYl+i+ki++aa+e+ga+av+pGyGflsE+  fa+a+e
     EHU02259.1   1 MFSTVLIANRGEIACRAIRTLKRLGIKSVAVFSDADRNAQHVKEADIAVGLGGDKASDSYLRIDKILAAAQETGAQAVWPGYGFLSESLPFAAACE 96 
                    6899******************************************************************************************** PP

                    HTT-EESSS-HHH CS
  Biotin_carb_N  97 eagivfiGPsaea 109
                    eagivf+GP+a++
     EHU02259.1  97 EAGIVFVGPTAAQ 109
                    *********9976 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8
                     HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSS CS
  Biotin_carb_N   11 GeiAvriiravrelgietvavyseedanslhvread 46  
                     G +A+ri ++  +++ +   +++++d  + + +   
     EHU02259.1 1067 GRAALRIEETEFDFAAHQAFLAANADDIAAFRQRQA 1102
                     677888888888877777777777766665554433 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0     5e-40   6.4e-37       1     107 [.     336     440 ..     336     441 .. 0.99

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 5e-40
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeef 96 
                    e+R++aEdp knf+ps+G +t++++p   +vRvds+v++gsevs+yyD+++aKlivh++tre al++l+ aL+ ++++G++tn+++lr+++++e+f
     EHU02259.1 336 EVRLYAEDPLKNFQPSPGVLTHVSFP--DDVRVDSWVTTGSEVSSYYDPMIAKLIVHADTREGALEKLQCALNATQLHGIATNLDYLRQVVATEAF 429
                    89************************..99****************************************************************** PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    ++g++ t+fl+
     EHU02259.1 430 RSGKVWTRFLD 440
                    *********98 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.7   1.1e+04      45      57 ..     265     277 ..     264     281 .. 0.84
   2 !   58.0   0.0   4.9e-19   6.2e-16      14      71 ..    1144    1202 ..    1135    1204 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.7
                    EEBSSSEEEEEES CS
  Biotin_lipoyl  45 ieapkaGvvkeil 57 
                    +++++aG+v++i+
     EHU02259.1 265 VNYRSAGTVEYIY 277
                    77899*****996 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 4.9e-19
                     E..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl   14 eg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdlla 71  
                     +g +++vlv++G++V+agq+l++veamKme  i+ap aG+vk + ++ G  v+ gd l+
     EHU02259.1 1144 NGnIWKVLVQAGETVSAGQTLVIVEAMKMELAITAPCAGRVKRVACQAGRPVSPGDTLL 1202
                     367999**************************************************986 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   3.1e-11     4e-08      30     174 ..     145     291 ..     122     292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.1e-11
                      HHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHH......HHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHH CS
  Dala_Dala_lig_C  30 kveeelgypvfVKpareGSSvGvskveseeelkeaie......eafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeak 116
                      +  e++gypv+ K+   G  +G++++  +  l++a e      e f  d+ v+ E+ i ++r +ev + g++k +v  +ge+  +  + + ++k
       EHU02259.1 145 SAAESIGYPVMLKSTAGGGGIGLTRCADAGALRNAWEsvrrlgEQFFSDAGVFLERCIdHARHVEVQIFGDGKGTVVALGERDCS--LQRRNQK 236
                      46789***************************9997722222245667999*******99*********************9775..5567788 PP

                      HC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 117 ysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                       ++++  l +pa    ++++++ + a++  ++++ r  + v +++  +++ +++ EvNt
       EHU02259.1 237 VVEETPALCLPA----ATRAALLASAVRLGEVVNYRSAGTVEYIYdAQQDAFYFLEVNT 291
                      876666666665....567788999********************667899*******9 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.3e-06    0.0017       3      42 ..    1137    1176 ..    1132    1178 .. 0.92
   2 !   13.4   0.0   4.1e-05     0.053       4      32 ..    1175    1203 ..    1173    1205 .] 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
  Biotin_lipoyl_2    3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlal 42  
                       + ++a+ +G + +++V+ G  V aG++L++ +  + +la+
       EHU02259.1 1137 QAVQADMNGNIWKVLVQAGETVSAGQTLVIVEAMKMELAI 1176
                       579****************************999988886 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.1e-05
  Biotin_lipoyl_2    4 sIaapvsGrVaqlnVkdGqrVkaGdvLae 32  
                        I+ap +GrV++++ + G  V  Gd+L+ 
       EHU02259.1 1175 AITAPCAGRVKRVACQAGRPVSPGDTLLW 1203
                       699***********************985 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.1   1.4e+03      14      51 ..     363     402 ..     350     424 .. 0.79
   2 !    7.8   0.1     0.004       5.1       2      30 ..    1139    1167 ..    1138    1173 .. 0.90
   3 !    8.8   0.0    0.0021       2.7       2      28 ..    1176    1202 ..    1175    1204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.1
      HlyD_3  14 nveegevvqagdelleiipp..dtllveakvpaadlgsik 51 
                 +v++ ++v+ g e+ + ++p  ++l+v+a   + +l +++
  EHU02259.1 363 DVRVDSWVTTGSEVSSYYDPmiAKLIVHADTREGALEKLQ 402
                 57999**************766899999998888887775 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.004
      HlyD_3    2 lrApvdGvvvelnveegevvqagdellei 30  
                  ++A   G ++++ v++ge v+ag++l+ +
  EHU02259.1 1139 VQADMNGNIWKVLVQAGETVSAGQTLVIV 1167
                  78999********************9755 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0021
      HlyD_3    2 lrApvdGvvvelnveegevvqagdell 28  
                  ++Ap +G+v+ +  ++g++v++gd+ll
  EHU02259.1 1176 ITAPCAGRVKRVACQAGRPVSPGDTLL 1202
                  89**********************997 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.4   0.00015      0.19      58     140 ..    1081    1168 ..    1057    1172 .. 0.57
   2 ?    4.9   0.0      0.01        13     106     137 ..    1171    1202 ..    1167    1205 .] 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                  XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23   58 aaqeeyllalkakkklkkkelleaarerLrllgvseeqiaelekt.....gkvqktvtvkapisGvVteknvreGqyvqpgdtlftia 140 
                  aa++++l+a +++ ++ ++++++a ++  rl+  +e +  + ++       + ++   v+a ++G + +  v+ G++v++g+tl+ + 
  EHU02259.1 1081 AAHQAFLAANADDIAAFRQRQAAAFEQEVRLWSQEEPEAPASTEAesdapAEDNSAQAVQADMNGNIWKVLVQAGETVSAGQTLVIVE 1168
                  5666666666666666666666666777777765544432222210000023345566777777777777777777777777777665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.01
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  106 qktvtvkapisGvVteknvreGqyvqpgdtlf 137 
                  + ++ ++ap +G V + + + G  v+pgdtl+
  EHU02259.1 1171 KMELAITAPCAGRVKRVACQAGRPVSPGDTLL 1202
                  66788999999999999999999999999986 PP

>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.3e-06    0.0081      29      80 ..    1136    1188 ..    1120    1196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.3e-06
        NQRA   29 vallgedyvglkpklkvkegdkVkkGqvlfe.dKknpgvlftspasGevvein 80  
                   + +++d +g   k++v+ g++V +Gq+l+  +  + ++ +t+p +G+v+++ 
  EHU02259.1 1136 AQAVQADMNGNIWKVLVQAGETVSAGQTLVIvEAMKMELAITAPCAGRVKRVA 1188
                  4556778888899**************98761566789************986 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.8   4.9e+03     124     148 ..      12      36 ..       8      43 .. 0.84
   2 !   14.8   0.0   1.2e-05     0.016      11     144 ..     134     276 ..     123     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.8
                 HHHHHHHHHHTSSEEEEEEEEEETT CS
   ATP-grasp 124 eiakkiveeLggvGvfavElFvled 148
                 eia +++++L  +G+ +v +F  +d
  EHU02259.1  12 EIACRAIRTLKRLGIKSVAVFSDAD 36 
                 688899999******9999998755 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.2e-05
                 EEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE-.-EEEEEE CS
   ATP-grasp  11 flaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafy.pvvetvq 100
                   ++++ +++ +aae++g+pv++K ++ g  G G + + ++  l++a+e +        ++  v +E  ++  + + v +  + +G+++++ +    +q
  EHU02259.1 134 TPLLNTLDDALSAAESIGYPVMLK-STAGGGGIGLTRCADAGALRNAWESVrrlgeqffSDAGVFLERCIDHARHVEVQIFGDGKGTVVALgERDCSLQ 231
                 4567888999999***********.89999********************99***99999999**********99999999999998666513334556 PP

                 ETTEEEEEEECEE-SCH.HHHHHHHHHHHHHHHHTSSEEEEEEEE CS
   ATP-grasp 101 edgilrlsvapaevsek.aqkkaeeiakkiveeLggvGvfavElF 144
                 +++  ++   pa +  +   +   + a ++ e +++    +vE  
  EHU02259.1 232 RRNQKVVEETPALCLPAaTRAALLASAVRLGEVVNYRSAGTVEYI 276
                 555555555555544430333333444466666666666666655 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         4   5.1e+03      65      95 ..     208     238 ..     201     241 .. 0.79
   2 !   14.7   0.1   1.8e-05     0.023      39      81 ..    1145    1188 ..    1123    1196 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4
      RnfC_N  65 vsapvhasvsGtVkaiekrlvahgsgveavv 95 
                 v ++++    GtV+a+ +r  + +++ + vv
  EHU02259.1 208 VEVQIFGDGKGTVVALGERDCSLQRRNQKVV 238
                 4778888889******999999888877776 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.8e-05
      RnfC_N   39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaie 81  
                  G+  k+lv+ g++V  Gq +   e+  + +++ a+ +G+Vk+++
  EHU02259.1 1145 GNIWKVLVQAGETVSAGQTLVIVEAmKMELAITAPCAGRVKRVA 1188
                  677799************87766664459************997 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.029      12      54 ..     116     159 ..     111     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
  ATP-grasp_5  12 eaeakelleaygipvve.trlassaeeaveaaeeigypvvlKiv 54 
                  ++ a+el ++ g+p+++ t l ++ ++a++aae+igypv lK +
   EHU02259.1 116 KHRARELAAQAGVPMTPgTPLLNTLDDALSAAESIGYPVMLKST 159
                  5899**********98725569********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 8056.64
//
Query:       EHU02260.1  [L=598]
Description: urea carboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-85  286.8   0.1    5.1e-85  286.1   0.1    1.3  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.1   0.1   2.9e-89   5.1e-85      12     450 ..      33     435 ..      25     436 .. 0.87

  Alignments for each domain:
  == domain 1  score: 286.1 bits;  conditional E-value: 2.9e-89
                 HHHHHH--EEEEEHCCCCH.HHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSS CS
     Amidase  12 avneklnalvtvfieeala.qAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgss 109
                 + +++ na++++++++ l+ q   l +++++  +  pL+GvP++vKDnidv+g+ptta++ a+ + +ae+Da vv+rLk+aGav++gkTn+d+fa g+ 
  EHU02260.1  33 EQEPSDNAWICLASPAQLEaQITPLLARYQQDPDALPLFGVPFAVKDNIDVAGWPTTAACPAFSY-TAEEDAFVVARLKAAGAVVIGKTNLDQFATGLV 130
                 457888999999877665515566777777899999**************************986.9999***************************** PP

                 STT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHHHHHB CS
     Amidase 110 tensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalllrvil 208
                 +  s +g++ N +d++ ++GGSS+GsA+++A+glv +++GtDt+GS R+PA f+++vGlKPt+g +S +gvv+ +   d++ ++a +ved+  + + + 
  EHU02260.1 131 GTRSPYGAVCNTFDPDFVSGGSSSGSASVLARGLVGFSLGTDTAGSGRVPAGFNNIVGLKPTKGWFSARGVVPACRLNDTISVFALTVEDAFTVASLAG 229
                 *************************************************************************************************** PP

                 S--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHH.HHHHHHHHHHHHHTTT-SSS CS
     Amidase 209 gedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleeals.lyylilvaeassnlarylgv 306
                 g+d+kd  s v p     +a++  k++     +++ + + +  d++ ++a ++al aL+++G+++ ++++  + ++++ ly   +vae   +       
  EHU02260.1 230 GYDEKDAYSRVNP----RTAPAGMKAR--PDFAIPATPE-FYDDAAAEAAWDAALSALKATGATLHPIDFTPFRQLAEqLYQGPWVAERT-V------- 313
                 **********954....4455555554..4556666665.45699999******************************555555555554.3....... PP

                 SS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHHHCSHHHHHGC CS
     Amidase 307 ryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdktidsytvlynl 405
                              + +   + +  + v + i  ++ ++sa +     ++a+  r++l r +++++ ++D+l++Pt+pt  +  ++++     + vlyn 
  EHU02260.1 314 ------------AVGEMLNQPENMDPVVHGIVANGLKYSAVD----AWQAEYQRAELARHIQQVLASFDALVVPTSPTIYTLDEMQQ-----EPVLYNA 391
                 ............344445577778999999999999999997....6777777779******************9999877655554.....5677776 PP

                 CTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHH CS
     Amidase 406 ldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetl 450
                    t  + + nla+l al++pa +++d+lP G+++i++a+++++l
  EHU02260.1 392 HFGT-YTNFTNLADLAALALPARFRNDDLPAGITLIAPAWHDRAL 435
                 6555.67***********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4321.74
//
Query:       EHU02261.1  [L=639]
Description: lytic murein transglycosylase, soluble [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-33  114.3   0.4    4.3e-33  113.4   0.4    1.4  1  SLT          Transglycosylase SLT domain
    1.2e-22   79.8   4.6    1.2e-22   79.8   4.6    3.4  3  SLT_L        Soluble lytic murein transglycosylase L domain
    2.7e-05   23.9   0.2      8e-05   22.4   0.1    1.8  2  Cucumo_coat  Cucumovirus coat protein
  ------ inclusion threshold ------
      0.065   13.9   0.7        1.3    9.8   0.2    3.4  2  TPR_6        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.4   9.6e-37   4.3e-33       3     108 ..     478     587 ..     476     594 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 9.6e-37
                 HHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT....-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH- CS
         SLT   3 iikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk....lsedelldPeknisagakyLkslykqyngslllalaAYNaG 97 
                  +++++ +++++s+++ai ++ES++npkA s++ga GLmQimp+ta++++++++     ++++l+dP++ni++g++yL  +y+q+++++++a aAYNaG
  EHU02261.1 478 YKQNTQGKTIPQSYAMAISRQESAWNPKARSPVGASGLMQIMPATATHTVKMFSipgyVNPSQLFDPQTNIQIGTQYLDYVYQQFDKNRIFASAAYNAG 576
                 57889999*********************************************9*9999**************************************** PP

                 HHHHHHTTHSS CS
         SLT  98 egtvkkakkev 108
                 +g+v+++++++
  EHU02261.1 577 PGRVRTWQNST 587
                 *******9987 PP

>> SLT_L  Soluble lytic murein transglycosylase L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.3     6e+03      22      40 ..     125     142 ..     123     148 .. 0.59
   2 ?   -0.9   0.1      0.41   1.9e+03      24      34 ..     340     350 ..     335     372 .. 0.82
   3 !   79.8   4.6   2.8e-26   1.2e-22       5      68 .]     403     466 ..     400     466 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
       SLT_L  22 eArreWrhllkrlskeeql 40 
                 +Ar  W+++    + ++q+
  EHU02261.1 125 QARCNWYYAKW-STGQQQA 142
                 78888988633.3333333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.41
       SLT_L  24 rreWrhllkrl 34 
                 + eW+++++ l
  EHU02261.1 340 KDEWQYWQADL 350
                 67999999876 PP

  == domain 3  score: 79.8 bits;  conditional E-value: 2.8e-26
       SLT_L   5 apalarirELralgrdaeArreWrhllkrlskeeqlalakyAkdqgWhdlaveatiqakaWDdL 68 
                  p+lar+rEL+++g d+ Ar+eW +l+++ +  +q++la+yA++q W+dl+v+ati ak+WD L
  EHU02261.1 403 GPELARVRELMYWGLDNLARSEWANLINSKTHVQQQMLARYASEQDWWDLSVQATITAKMWDSL 466
                 69************************************************************87 PP

>> Cucumo_coat  Cucumovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.8e-08     8e-05      80     161 ..     148     235 ..     142     240 .. 0.78
   2 ?   -2.8   0.0      0.94   4.2e+03     153     166 ..     348     361 ..     294     363 .. 0.48

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.8e-08
                  SEEEEEEEE-CTTTS-SSSHHHHHSTSS--EEEE-BSTTTSS-S.EEEEEGCCC......TE.........BGGGGCCEEEEEEE-SS CS
  Cucumo_coat  80 eqlWltvkklPkvsdllveaisamdGlsnvlvqqrallavdannvklltdlsam......raeptlqtwlkdladlrkyavkvsskdd 161
                  + +Wl +  lP+ +d l+  ++a + ls+  v  r  la++a n  l+  l+ m      +   +l t  kd   +  +a  v + d+
   EHU02261.1 148 KAIWLRGTALPNDCDKLFSVWQASGQLSPITVLERIRLAMKAGNDSLVSYLAKMlpadykTMSDALLTLQKDPQSVTTFANSVGATDF 235
                  579*****************************************9**99999993322222234455566666666666666666665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.94
                  EEEEEE-SSTB-TT CS
  Cucumo_coat 153 avkvsskddaletd 166
                  a +++skd   e+d
   EHU02261.1 348 ADLLYSKDRKEEAD 361
                  55666666666666 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.52   2.3e+03      24      31 ..      81      88 ..      79      89 .. 0.90
   2 ?    9.8   0.2   0.00029       1.3       2      27 ..     343     368 ..     342     371 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.52
                HHHHHH-T CS
       TPR_6 24 erlikeYP 31
                +++i++YP
  EHU02261.1 81 QNFIQKYP 88
                79****** PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                  +y++a ++++ +++++A e+l++l 
  EHU02261.1 343 WQYWQADLLYSKDRKEEADEILRKLM 368
                 68********999***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4707.87
//
Query:       EHU02262.1  [L=115]
Description: Trp operon repressor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-28   97.8   0.0    3.6e-28   97.5   0.0    1.1  1  Trp_repressor   Trp repressor protein
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.035   14.0   0.0    1.5  1  HTH_5           Bacterial regulatory protein, arsR family
       0.18   11.9   0.0       0.23   11.6   0.0    1.2  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito


Domain annotation for each model (and alignments):
>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   6.1e-32   3.6e-28       2      87 ..      17     102 ..      16     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 6.1e-32
  Trp_repressor   2 eldallelilkleneeeleellelllTpdErealaqRlqvvkeLLkeelsqreIaeelgvSiAtItRvsrsLktgsdeykavLkrl 87 
                    ++  +++li+++ + +++  ll+l++TpdErea ++Rl++++ LL++++sqre+++elgv+iAtItR+s+sLk ++++ k +L+ +
     EHU02262.1  17 NWLRFVDLIQQAFADQHALPLLQLMMTPDEREAFGTRLRIIESLLNGDMSQRELKNELGVGIATITRGSNSLKEAPPALKRWLEAQ 102
                    799********************************************************************************986 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.9e-06     0.035       3      32 ..      52      81 ..      51      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
                HHHHHHHHHTTSSEEHHHHHHHHTS-HHHH CS
       HTH_5  3 tRlkILklLaegelcvcelaeelglsqstv 32
                tRl+I+ +L +g ++  el +elg+  +t+
  EHU02262.1 52 TRLRIIESLLNGDMSQRELKNELGVGIATI 81
                9***********************977776 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.8e-05      0.23      82     126 ..      64     108 ..      37     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
  MqsA_antitoxin  82 eldqreaaeifGgGvnafsryekGkvrpplalvkllklldrhPel 126
                     +++qre+++ +G+G+ + +r  +   ++p al + l+   rhPe 
      EHU02262.1  64 DMSQRELKNELGVGIATITRGSNSLKEAPPALKRWLEAQLRHPES 108
                     689****************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 849.45
//
Query:       EHU02263.1  [L=171]
Description: thiamin metabolism associated protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-53  180.3   0.1    2.7e-53  180.1   0.1    1.0  1  NTPase_I-T  Protein of unknown function DUF84


Domain annotation for each model (and alignments):
>> NTPase_I-T  Protein of unknown function DUF84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.1   1.5e-57   2.7e-53       1     162 [.       7     165 ..       7     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 1.5e-57
                 S---HHHHHHHHHHHHHHCTT..EEEEEEE---SS-SS-BSHHHHHHHHHHHHHHHHHHSTTSSEEEEEEEEEET....TEEEEEE.EEEESS-EEEEE CS
  NTPase_I-T   1 gSkNpvKveAvkeafeklfkd..vevegvsvpsgvsdqPmgdeetlkGAinRaknaleaaeeadygvGlEgGveeleeklldvawaavvdkegrvsvgr 97 
                 +++Np+K++A+ +af+++f +  ++ egv+v+sgv++qP+++ et++GA++R+ na++  +ead++v++E+G+ee      ++aw++v ++ ++++ +r
  EHU02263.1   7 ATTNPAKIRAIAQAFNDVFGEgsCHTEGVEVESGVAAQPLSNLETRTGARQRVMNARQVRPEADFWVAIEAGIEE----ESAFAWIVVENH-KQRGESR 100
                 69******************9889999**********************************************88....679****88777.799**** PP

                 ---EE--HHHHHHHCTT--HHHHHHHHHTHCCHHHTTHHHHHHTTTSS-HHHHHHHHHHHHTHHH CS
  NTPase_I-T  98 sasfelPeevveevkegeelgevmdelfgtenikqkeGaigllTkglvtRedlyeqavilAlipf 162
                 sasf+lP+ v+  ++eg+elg+ m +l+g enik+k+Gaig lT+gl++R+++y+qa+ilAl+pf
  EHU02263.1 101 SASFTLPPPVMAGLREGRELGDEMARLTGIENIKHKGGAIGTLTHGLLSRSSVYHQALILALCPF 165
                 ****************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1495.79
//
Query:       EHU02264.1  [L=215]
Description: phosphoglyceromutase 2, co-factor independent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-56  191.0   1.6    1.9e-56  190.8   1.6    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   1.6   1.1e-60   1.9e-56       1     191 [.       4     194 ..       4     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 1.1e-60
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 +yLvRHGet wnae+r+qg++d+pLt++G+ qA++++er+++ +i++i+sS+l R+r+Tae+ia+a+g++v+ d++LrE+++G++e++  +e+ +e + 
  EHU02264.1   4 VYLVRHGETVWNAERRIQGHSDSPLTAKGEHQARQVGERIEHAGITHIISSDLGRTRRTAEIIADACGCDVTFDARLRELNMGVLEKRLLDELSAEEEG 102
                 69************************************************************************************************* PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEE CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrl 191
                 + +   ++++  r+p+gEs+ ++a+R+++al++ +a  +g + l+VsHg+++ +l++++lglp  + rrl+l n+s+s+++++++ w    +
  EHU02264.1 103 WRASLVNGTEGGRIPQGESMTELAQRMQDALNACLALPAGSRPLIVSHGMALGVLVSTILGLPAYAERRLRLLNCSISRVDHQQSAWLAAGW 194
                 **************************************************************************************988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1733.75
//
Query:       EHU02265.1  [L=288]
Description: DNA-binding transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-21   74.0   1.4    7.3e-20   71.0   0.9    2.1  2  HTH_18     Helix-turn-helix domain
    1.2e-17   64.6   0.0    1.6e-17   64.2   0.0    1.2  1  GyrI-like  GyrI-like small molecule binding domain
    8.4e-15   54.4   0.3    1.1e-08   34.9   0.2    2.4  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
    1.2e-06   28.7   0.0    1.8e-06   28.2   0.0    1.3  1  Cass2      Integron-associated effector binding protein
  ------ inclusion threshold ------
       0.17   10.4   0.0       0.25    9.8   0.0    1.2  1  GDI        GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.9     2e-23   7.3e-20       4      80 ..      30     105 ..      27     106 .. 0.97
   2 ?    1.1   0.0      0.14     5e+02      24      45 ..     152     172 ..     146     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 2e-23
                 HHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   4 algvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 ++g+s ++Lqr+fk+v+g    +y+r++Rl +A  +L+  t++++ +iAl++ F+++++F+raf+k f++tP+ yrr
  EHU02265.1  30 KAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALR-LTSRPILDIALQYRFDSQQTFTRAFKKQFNQTPAWYRR 105
                 689**********************************5.7***********************************98 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHSSS- CS
      HTH_18  24 pkeylrrlRlerArrlLlentg 45 
                  ++y++++Rl+  r+ Lle t+
  EHU02265.1 152 ISKYRDEMRLHFWRQFLLE-TD 172
                 67899************97.54 PP

>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   4.5e-21   1.6e-17       2     155 .]     127     287 ..     126     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 4.5e-21
                 CEEEEEE--EEEEEEEEEEEHCCCHHHHHHHHHHHHHHHHHHCTT...--SSEEEEEEEEE-..STTCCCEEEEEEEECCCCCCGBTTSEEEEE-SEEE CS
   GyrI-like   2 eveivelpafrvvgirhrgdyneeggipklweelyawaseiklsn...avspligvssdepe..etedeelkydigvtveirvegpeglefleipagey 95 
                 e ++v+lp++ + g ++ ++++ e+ i+k  +e+  +++ + l     ++++l+g+ + ++   +++++e+ y ++v v+ +  + ++ ++++++ag y
  EHU02265.1 127 EHQFVTLPETVLFGQTQSYTCTLEQ-ISKYRDEMRLHFWRQFLLEtdtVPPVLYGLHQVRASheKDDEQEILYTTAVPVDSA-TNMHSGQNVSLEAGDY 223
                 789*********************9.*****************99*************99998899999***********98.999999********** PP

                 EEEEEECEGGGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECCCTS....SCGCEEEEEEEEEC CS
   GyrI-like  96 AvfrhkGpyddlqatyaklygewlpesgyerrdgpsiEiYlsdpre....reeelkteiyipvk 155
                 ++f + Gp  dlq+++  lyg+++p+ g+ rr+g +iE+      +    ++++ k+e+ ip++
  EHU02265.1 224 VQFNYAGPRVDLQEFILLLYGTCMPTLGLTRRQGQDIERFITHGGKkrtePPADIKCEYLIPIR 287
                 ****************************************9998888899************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.2e-07    0.0033       1      42 []      14      55 ..      14      55 .. 0.95
   2 !   34.9   0.2   3.2e-12   1.1e-08       6      41 ..      68     104 ..      66     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.2e-07
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                L+++l+++l++++++  +g+S  +++r Fk +tG  + +y++
  EHU02265.1 14 LESHLDQPLSLDNVSIKAGYSKWHLQRMFKDVTGHAIGAYIR 55
                799*******************************99999985 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 3.2e-12
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                  t+  i diA ++ f S+++F+r+Fkk++++tP  yr
  EHU02265.1  68 LTSRPILDIALQYRFdSQQTFTRAFKKQFNQTPAWYR 104
                 567789***************************9887 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.1e-10   1.8e-06       3     149 .]     131     286 ..     129     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.1e-10
                 EEE--EEEEEEEEETTCCCCH...HHHHHHHHHHHHHHHCTTSBS.TEEEEEEEC-TT....-CCGEEEEEEEEE-TTSSS-TT-EEEEE--EEEEEEE CS
       Cass2   3 velpeftvaGiryegskeeedlnkeigklwreflekgrlkkikkd.krvfgiyhdyes....eenkfsyyagvevpsdsevpeglvkkeiPggkYavft 96 
                 v+lpe  ++G     +   e+++k   ++   f++++ l ++ +    ++g++  ++s     e+++ y ++v+v+s + +  +   + +++g Y+ f+
  EHU02265.1 131 VTLPETVLFGQTQSYTCTLEQISKYRDEMRLHFWRQF-LLETDTVpPVLYGLHQVRAShekdDEQEILYTTAVPVDS-ATNMHSGQNVSLEAGDYVQFN 227
                 6778888888887777777877777777777777777.444543336777777766666669999************.55555555599********** PP

                 EESSSTT-HHHHHHHHHHCHCCHCTEEE-SSEEEEEE.....STTHHH......TEEEEEEEEE CS
       Cass2  97 iegdfeedlaeaweaiygellpnsnyerrggpdfEvy.....keepae......kseielyIPv 149
                   g+  + l+e++  +yg+ +p+ +++rr+g d+E       k    +      + + e+ IP+
  EHU02265.1 228 YAGPRVD-LQEFILLLYGTCMPTLGLTRRQGQDIERFithggK----KrteppaDIKCEYLIPI 286
                 ****886.*****************************876662....2334466999******8 PP

>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.9e-05      0.25     159     203 ..      21      65 ..      12      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.9e-05
                 T--TTTSBHHHHHHHCT--HHHHHHHHHHTS--SSSGGGGSBCHH CS
         GDI 159 dldlkkatmkevykkfdlsedtkdfiGhalalyrdddylkqpale 203
                  l l+++++k  y+k++l++  kd +Gha++ y   + l++ a++
  EHU02265.1  21 PLSLDNVSIKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVA 65 
                 578899999*************************99999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2489.91
//
Query:       EHU02266.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-97  325.6   4.1    1.2e-96  323.5   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.3e-16   59.2   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    5.1e-15   55.6   1.4    1.2e-14   54.4   1.4    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.8e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.015   14.5   1.2      0.029   13.6   1.2    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.028   14.0   2.0      0.035   13.7   0.6    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.037   13.9   0.4         21    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.05   12.2   7.5      0.079   11.5   7.5    1.3  1  FUSC             Fusaric acid resistance protein family
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.48   10.5   5.3        3.4    7.8   0.2    2.8  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.1  1  TMPIT            TMPIT-like protein
          2    7.9   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.0   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.9    6.9   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  323.5   0.0   1.5e-99   1.2e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU02266.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 323.5 bits;  conditional E-value: 1.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02266.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02266.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02266.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02266.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   1.4   1.5e-17   1.2e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.5e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l p+g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02266.1 128 ETTCPACGGDLNPLGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.3e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.3e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU02266.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.2   3.5e-05     0.029      47     106 ..      34      90 ..      25     100 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02266.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4    0.0001     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.17   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02266.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02266.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   4.3e-05     0.035     144     232 ..      10     100 ..       3     189 .. 0.69
   2 ?   -1.3   0.0       1.5   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU02266.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555555666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02266.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.5   2.1e+03      26      54 ..      16      44 ..       9      59 .. 0.77
   2 ?    5.1   0.0     0.026        21      15      54 ..      64     103 ..      54     117 .. 0.82
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.5
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02266.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999888777655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU02266.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888899999458***************7 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02266.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.5e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU02266.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU02266.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.5   9.7e-05     0.079     213     295 ..       4      92 ..       1     122 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.7e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02266.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0    0.0001     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02266.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00042      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00042
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU02266.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00043      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.29   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02266.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU02266.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00038      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02266.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02266.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02266.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02266.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0015       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02266.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0053       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU02266.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU02266.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0034       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.1   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0034
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU02266.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU02266.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU02266.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.31   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02266.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02266.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1451  (0.0809303); expected 358.6 (0.02)
Passed bias filter:                     1028  (0.0573373); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 3687.23
//
Query:       EHU02267.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02267.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 905.22
//
Query:       EHU02268.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02268.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02268.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02268.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02268.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 845.25
//
Query:       EHU02269.1  [L=157]
Description: CreA family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-57  192.5   0.0    2.8e-57  192.3   0.0    1.0  1  CreA      CreA protein


Domain annotation for each model (and alignments):
>> CreA  CreA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.0   1.6e-61   2.8e-57       1     131 []      25     156 ..      25     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 192.3 bits;  conditional E-value: 1.6e-61
        CreA   1 vgevstefkllgandkivvealdDpkvegvtcyvsrakkglikgalglaedpsdasiacrqtgpitlkekikks.kkgeevfkesksllfKslkvvRiy 98 
                 +g+v+t+fk++g+++kivvea+dDp+v++vtcy+srak+g+ikg lglaed+sda+i+c+qtgp++l++ki+k+  +g++vf++++sl+fK+l+vvR++
  EHU02269.1  25 IGSVDTVFKMFGPDHKIVVEAFDDPDVKNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQTGPVELSDKIAKGkAQGDVVFRQRTSLIFKKLQVVRFF 123
                 89**********************************************************************996799********************* PP

        CreA  99 DkkrntlvYlvysdkliegspknsvstvpllkt 131
                 D+krn+lvYl+ysdk+++gspkn++s+vp++++
  EHU02269.1 124 DSKRNALVYLAYSDKVVDGSPKNALSAVPIMPW 156
                 ******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1389.78
//
Query:       EHU02270.1  [L=238]
Description: DNA-binding response regulator in two-component regulatory system with ArcB or CpxA [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-27   94.2   0.4    1.7e-26   92.6   0.1    1.8  2  Response_reg  Response regulator receiver domain
    2.9e-18   65.7   0.0    5.3e-18   64.9   0.0    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.1   1.9e-30   1.7e-26       1     110 [.       6     113 ..       6     115 .. 0.98
   2 ?   -0.9   0.0       0.2   1.8e+03      62      82 ..     205     228 ..     203     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.9e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+D+ + r+ l++++e egy +v ea+dg+e+ + l  ++v+l+++Din+pg +Gl l++e+re+  ++  ++lt++++e d++ +l++gadd+
    EHU02270.1   6 ILIVEDELVTRNTLKSIFEAEGY-VVYEATDGAEMHQVLTDNDVNLVIMDINLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDY 100
                   8**********************.*******************************************99.*************************** PP

                   EESSG-HHHHHHH CS
  Response_reg  98 lsKpfdpeeLlka 110
                   ++Kpf+p+eL+ +
    EHU02270.1 101 ITKPFNPRELTIR 113
                   *********9865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.2
                   HHHHHHCT...TTSEEEEEESSTS CS
  Response_reg  62 lkeireed...pelpviiltahse 82 
                   +++ir++    p++p ii t h+e
    EHU02270.1 205 IRRIRKHFestPDTPEIIATIHGE 228
                   789999887778899999998875 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   5.9e-22   5.3e-18       1      77 []     156     232 ..     156     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 5.9e-22
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ge+++l + ef+ +  ++enpg++ +r++Ll+++ g+d ++ drtvdv i+r+Rk +e +++ p+ I t++g GYr+
   EHU02270.1 156 GEQYKLPRSEFRAMLHFCENPGKIQTRADLLKKMTGRDLKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232
                  68899**********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1864.62
//
Query:       EHU02271.1  [L=234]
Description: putative rRNA methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-34  119.5   0.0    1.7e-34  119.0   0.0    1.2  1  SpoU_methylase   SpoU rRNA Methylase family
      0.009   15.9   0.0      0.014   15.2   0.0    1.4  1  Methyltrn_RNA_4  SAM-dependent RNA methyltransferase


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   1.9e-38   1.7e-34       4     142 .]       5     153 ..       3     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 1.9e-38
                     EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEESTT-SEGCCS...... CS
  SpoU_methylase   4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatslkgkslsei...... 91 
                     ++lv +  p+N+Ga+aR++k++g+sel++v+ +++   +p a+r+a+ga ++l+ +k++++l++al++++ + +a++a+s+   +++ +      
      EHU02271.1   5 LILVSPARPENIGAAARAMKTMGFSELRIVASDAW--QDPAARRVAHGAGDILDnVKTFATLADALADIDFS-VATTARSRARFRYYATpqqvea 96 
                     79*****************************7665..9**********************************.8888888866666633233344 PP

                     ......HHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  92 ......dlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                           ++ +++alvfG+Ed+Gl+ne+l+++d l  Ipm+++++SLN+ +Av++ +y
      EHU02271.1  97 rllekrQWVNSMALVFGREDSGLTNEELDQVDLLTGIPMAQDYPSLNLGQAVMVYCY 153
                     444444555**********************************************98 PP

>> Methyltrn_RNA_4  SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.6e-06     0.014      61     176 ..      37     151 ..      20     156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-06
                      HHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS...--SS-B-HHHHHHHHHH--...S-EEEEE--.TT---HHH CS
  Methyltrn_RNA_4  61 ehWtegagaeynpdRkealslvkvvesleealeeiekeegkkplvvatsAr...kkentvsyeelrelleeee...kpvlllfGt.gwGlaeev 147
                      + W++ a +++ +   + l++vk++++l++al++i  +       vat+Ar   + +   + ++++++l e++   +++ l+fG    Gl++e 
       EHU02271.1  37 DAWQDPAARRVAHGAGDILDNVKTFATLADALADIDFS-------VATTARsraRFRYYATPQQVEARLLEKRqwvNSMALVFGReDSGLTNEE 123
                      5688888899999999999**************99754.......44444422212223333444444433321117899****7368****** PP

                      HTT-SEEB--TTTTSS-----HHHHHHHH CS
  Methyltrn_RNA_4 148 lekadyiLepirgaseynHLsvrsAvaii 176
                      l+++d +L+ i +a++y  L    Av ++
       EHU02271.1 124 LDQVD-LLTGIPMAQDYPSLNLGQAVMVY 151
                      ****9.5899*******999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1830.39
//
Query:       EHU02272.1  [L=820]
Description: aspartokinase I/homoserine dehydrogenase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-49  166.3   0.0    3.6e-48  163.7   0.0    2.3  2  Homoserine_dh  Homoserine dehydrogenase
    6.3e-46  156.9   0.3    2.5e-45  155.0   0.0    2.1  2  AA_kinase      Amino acid kinase family
      6e-29  101.1   0.0    1.8e-28   99.6   0.0    1.9  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
    2.5e-19   68.8   2.6    7.5e-10   38.5   0.5    3.1  3  ACT_7          ACT domain
    6.1e-18   64.3   0.5    6.5e-08   32.2   0.0    3.0  2  ACT            ACT domain


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.42   1.5e+03      50      65 ..      76      91 ..      41      96 .. 0.79
   2 !  163.7   0.0     1e-51   3.6e-48       1     173 []     614     811 ..     614     811 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.42
                   TTSS-SSTHHHHTTHH CS
  Homoserine_dh 50 lGyaeaDptdDveGlD 65
                   +G+aea p +D eGl 
     EHU02272.1 76 QGLAEAQPGFDYEGLK 91
                   69***********985 PP

  == domain 2  score: 163.7 bits;  conditional E-value: 1e-51
                    --HHHH.HHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--ST.. CS
  Homoserine_dh   1 Piiktl.keilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledvevegis.. 93 
                    P+i+ l ++ ++gd++ r++Gil+g+l+yi+ +++e g s+se+ + a+e+G++e+Dp+dD++G+D+arKl+ilar+a g++ e++d+e+e +   
     EHU02272.1 614 PVIENLqNLLNAGDELIRFSGILSGSLSYIFGKLDE-GVSLSEATRMAREMGFTEPDPRDDLSGTDVARKLLILAREA-GYQHEMHDIEIEPLLpa 707
                    9*****9999*************************6.999**************************************.*************8888 PP

                    .............TS-HHH......HHHHHCTTEEEEEEEEE...CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEE..EEEEES-SSHHHHH CS
  Homoserine_dh  94 .............kltaed......ikeakeegkvlklvasa...vearVkpelvpkshplasvkgsenavlvetdrlge..lviqGpgaGaepTA 165
                                 +l++ d      +++a+e+gkvl+lv+++     ++Vk+e+v++++pl++vk+ ena++++++++++  lv++G gaG+++TA
     EHU02272.1 708 hltaiadveqfmqQLPDVDaaiaarVAQAREAGKVLRLVGVIeegGACKVKIEAVDSNDPLFKVKNGENALAFYSRYYQPipLVLRGYGAGNDVTA 803
                    7777777777777666666777888****************755548************************************************* PP

                    HHHHHHHH CS
  Homoserine_dh 166 savlsDll 173
                    ++v++Dll
     EHU02272.1 804 AGVFADLL 811
                    ******96 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   6.9e-49   2.5e-45       3     241 .]       2     284 ..       1     284 [. 0.86
   2 ?   -1.2   0.0      0.34   1.2e+03      35      53 ..     466     483 ..     426     523 .. 0.68

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 6.9e-49
                 EEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--.HHHHHHHHHH.TCCCCCHHHC.................E..HHHHHHHHH....... CS
   AA_kinase   3 vVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGg.gsftdgllal.ksglssgelaa.............glrstleeagevatr....... 79 
                  V+K+GG+s++++e+  + r+a++++    ++ +++ V ++  ++t++l+a  ++ +s + + +             +                     
  EHU02272.1   2 RVLKFGGTSVANAER--FLRVADILESN-AQQGQVATVLSApAKITNHLVAMiEKTISGQDALPnlsdatrifaellQ-------------Glaeaqpg 84 
                 69*************..***********.6666999999999**********74444444444344555444443330.............14444466 PP

                 ...................................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHH.HTT- CS
   AA_kinase  80 ...................................dalaslgerlvaallaaglpavglsaaaldateagr...degsdgnvesvdaeaieell.eagv 139
                                                    +a+   ge+l+ a+++++l+a+g+ ++ +d++e+     ++ ++ ++   +++ ie +    ++
  EHU02272.1  85 fdyeglksrvdsefaqlkqvlhgisllgqcpdsvnAAIICRGEKLSIAIMEKLLEARGYGVSVIDPVEKLLaigHYLESTVDIAESTRRIEASQiPTEN 183
                 66666666666667777779999**************************************************97777777777777777777644468 PP

                 EEEEESEEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT- CS
   AA_kinase 140 vpvltgfigldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggi 235
                  + ++gf + +e ge   lgr++sD++aa lA++l+Ad+++i+tdVdGVy++dp++vpdarll+ +s++ea+e    l+++G+kv+hp+++a++ + +i
  EHU02272.1 184 MILMAGFTAGNERGElvvLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAME----LSYFGAKVLHPRTIAPIAQFQI 278
                 *************************************************************************....********************** PP

                 EEEEEE CS
   AA_kinase 236 pvvItn 241
                 p+ I+n
  EHU02272.1 279 PCLIKN 284
                 ****98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.34
                 TEEEEEE--HHHHHHHHHH CS
   AA_kinase  35 nklvvVhGggsftdgllal 53 
                 ++ v V+G g+++ +ll++
  EHU02272.1 466 IE-VFVVGVGGVGGALLDQ 483
                 33.6666666666666666 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   4.9e-32   1.8e-28       1     116 [.     472     605 ..     472     606 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 4.9e-32
                    --SHHHHHHHHHHHH---S.....SEEEEEEEEESS.EEE-TT......HHHHHT--CB---HHHHHHHH.....S-EEEEE-S--HHHHTTHHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse.....ielelvavadrd.sllskd......rkallasealtldlddliahl.....dpdvvVEcasseavaelvlka 79 
                    G+G++G+a+l+ql rqq++     i+l+++++a+++  l++ +      +k ++++++++ +l +li+ +      ++v+V+c+ss+ava++++++
     EHU02272.1 472 GVGGVGGALLDQLHRQQAWlkqkhIDLRVCGIANSRaLLTNVHgidlsnWKGEMEQAKEPFNLGRLIRLVkeyhlLNPVIVDCTSSQAVADQYADF 567
                    9***********************************8888888*************************88***977******************** PP

                    HHTTEEEE-S--CGGG.-HHHHHHHTSSSTTS--.EE- CS
  NAD_binding_3  80 Lkagkdvvtankgala.dealyeeLreaaeangakiyv 116
                    L++g++vvt+nk+a++ + ++y+++r+ a  +++k+++
     EHU02272.1 568 LAEGFHVVTPNKKANTaSWEYYQKIRATAAGSRRKFLY 605
                    **********************************9998 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.58   2.1e+03      16      35 ..      64      82 ..      54      82 .. 0.81
   2 !   28.8   0.0   2.2e-10     8e-07       5      65 .]     314     376 ..     312     376 .. 0.91
   3 !   38.5   0.5   2.1e-13   7.5e-10       4      64 ..     394     456 ..     391     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.58
                ---SS--HHHHHHHHHHTTT CS
       ACT_7 16 lpfdvtGivaklaspLaeag 35
                l +d+t i a+l + Laea+
  EHU02272.1 64 L-SDATRIFAELLQGLAEAQ 82
                5.789************985 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 2.2e-10
                 EEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHHHHHH CS
       ACT_7   5 gwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAveaLhe 65 
                 ++++++v+g+g+++ ++G++a++++  +++gIs+  i+   +++++++ Vp+++  +A ++L++
  EHU02272.1 314 NMAMFNVSGPGMKG-MVGMAARVFATMSRTGISVVLITqssSEYSISFCVPQSEQARARRVLED 376
                 6799**********.******************87665556*****************999985 PP

  == domain 3  score: 38.5 bits;  conditional E-value: 2.1e-13
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAveaLh 64 
                 ++ +++svvg+g+++ + Gi ak +s+La+a+I+i +i+   ++r+++++V+ +d+ + v++ h
  EHU02272.1 394 ENLAVISVVGDGMRT-LRGISAKFFSALARANINIIAIAqgsSERSISVVVNNDDATTGVRVVH 456
                 7899***********.**********************9999**************99998877 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.8e-11   6.5e-08       6      61 ..     324     376 ..     322     381 .. 0.91
   2 !   28.3   0.8   3.1e-10   1.1e-06       6      51 ..     405     447 ..     400     455 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.8e-11
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHH CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlea 61 
                 g+++++G++arvf+++++ gi+++ i+q+sse+   +i+f+v   +++++  vle 
  EHU02272.1 324 GMKGMVGMAARVFATMSRTGISVVLITQSSSEY---SISFCVPQSEQARARRVLED 376
                 7999****************************9...89999999998888888885 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 3.1e-10
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEE CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvd 51 
                 g++   G+ a++f+ala+++iNi+ i q+sse+   +i++vv   d
  EHU02272.1 405 GMRTLRGISAKFFSALARANINIIAIAQGSSER---SISVVVNNDD 447
                 677778*************************88...5666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5608.03
//
Query:       EHU02273.1  [L=309]
Description: homoserine kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-15   55.8   0.2      1e-14   54.5   0.2    1.7  1  GHMP_kinases_N  GHMP kinases N terminal domain
    1.3e-08   35.1   2.0    1.7e-08   34.7   0.0    2.3  2  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.2   1.2e-18     1e-14       2      66 .]      84     150 ..      83     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.2e-18
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHH...HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllallglslee...aklaleaerlaqggngsggDvaasvyGg 66 
                     i++++++P+g+GLGSSA+ +va+++A+++++g++l++   + l  e e  +  g+ + ++va++++Gg
      EHU02273.1  84 ITLEKNMPIGSGLGSSACSVVAGLMAMNEFCGKPLDDnqlLTLMGELEGRIS-GSVHYDNVAPCFLGG 150
                     899*******************************955467888888888887.888***********8 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.9       0.9   8.1e+03      55      65 ..      93     103 ..      92     109 .. 0.84
   2 !   34.7   0.0   1.9e-12   1.7e-08       4      81 ..     213     285 ..     210     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.9
  GHMP_kinases_C  55 GaGgGptvfal 65 
                     G+G+G++ + +
      EHU02273.1  93 GSGLGSSACSV 103
                     9****998866 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 1.9e-12
  GHMP_kinases_C   4 alergdlellgellnlsqrs...elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvaralre 81 
                     a+++++  l ++l+     +   e+  ++  l p + ++ +a+++ Gal+ ++sG+  Gpt+fa++   + a+q+a+ l++
      EHU02273.1 213 ACHTRQPALAAKLMQ----DviaEP--YRTQLLPGFAQARQAAQDIGALACGISGS--GPTLFAICNQMETAQQMADWLSQ 285
                     555556666666666....56999*..*****************************..********888888887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2421.44
//
Query:       EHU02274.1  [L=427]
Description: threonine synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-21   74.7   0.0    1.1e-20   74.2   0.0    1.1  1  PALP         Pyridoxal-phosphate dependent enzyme
    1.6e-11   44.2   0.0      8e-11   42.0   0.0    2.2  2  Thr_synth_N  Threonine synthase N terminus


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.0   1.2e-24   1.1e-20      28     281 ..      97     370 ..      80     373 .. 0.78

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1.2e-24
                 EGGGSTTSBTTHHHHHHHHHH..HHTT...TTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-.HHHHHHHHHTT-EEEEE..CCHHHHHHHH CS
        PALP  28 lEslnptgSfKdRgaeyllar..lkeg...tgaktvveassGNhgralAaaaall.Glkvtivvpadas.pekvallrllGaevvev..ggdydeavaa 117
                   ++ pt +fKd g  ++ +           ++ t+++a+sG++g+a+A+a   + +++v+i+ p+++  p + +l   lG +++ +  +gd+d+++a+
  EHU02274.1  97 ELFHGPTLAFKDFGGRFMAQMlsY--VsgsDEQITILTATSGDTGAAVAHAFYGMeNVRVVILYPQGKIsPLQEKLFCTLGGNIETIaiDGDFDACQAL 193
                 44566***********99988443..444789*********************9999*********99867777777788886666666********** PP

                 HHHHHHH..STTCEE--TTT..SHHHHHHHHTHHHHHHHHTT.TTEE..EEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS CS
        PALP 118 aaelaae..gegaylvsqfd..nptviegygtiglEileqlg.gkpd..avvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvt 209
                 ++++  +   ++a+ +++ +  n  + +++    +E ++ql+ +k +  +v vp G+ g +++   +   + p ++ +++ ++ +d++ r+l +g+ ++
  EHU02274.1 194 VKQAFDDqeLKKAIGLNSANsiNISRLLAQICYYFEAVAQLPqEKRNqlVVSVPSGNFGDLTAGLLAKSLGLP-IKRFIAATNANDTVPRFLGNGEWQP 291
                 **99888676777777777766777778888888899999998555523566666776777777777777788.5666666888*************** PP

                 ..B.SSS.CCSTCS......CGTTCCHHHHSEEEE.....EEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHC CS
        PALP 210 vpvsdtiadglavg......spselafelldrlvd.....eivtvsdeealeamrllarregivvepssaaalaal.klreage 281
                   +  t+  +++v+      +    + el++r+        + +vsd+ + eamr la + g+v ep++a+a   l +++++ge
  EHU02274.1 292 NATVATLSNAMDVSqpnnwpR----VEELFRRKTWrlsdlAYGAVSDAVTREAMRDLA-KLGYVSEPHAAIAWRLLrDQLQDGE 370
                 *************97755442....3333322222333356669**************.*************999977666666 PP

>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0     9e-15     8e-11       7      79 .]       8      80 ..       4      80 .. 0.95
   2 ?   -2.2   0.0      0.56     5e+03      31      57 ..     307     336 ..     304     346 .. 0.60

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 9e-15
  Thr_synth_N  7 geaeklsfeeallkGlAeDgGLyvPeeiPklsaeeleelrklsYaelafevlklfiedeipeedLkeliekaY 79
                 +++e++sf +a+ +Gl +  GL+ P e+P+++ ++++++ ++++     ++l+ +i+de+p+++L+e ++ a+
   EHU02274.1  8 DHNEQVSFAQAVKQGLGSQQGLFFPLELPEFELTDIDAMLEMDFVTRSSKILSAYIGDEVPAAHLTERLKTAF 80
                 6789*************************************************************99888775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.56
  Thr_synth_N  31 PeeiPklsae...eleelrklsYaelafev 57 
                  P+++P++++    +  +l++l Y ++  +v
   EHU02274.1 307 PNNWPRVEELfrrKTWRLSDLAYGAVSDAV 336
                  778888776411133345566666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.34
# Mc/sec: 3774.64
//
Query:       EHU02275.1  [L=257]
Description: uncharacterized DUF328 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-92  309.8   0.1    1.2e-92  309.7   0.1    1.0  1  H2O2_YaaD  Peroxide stress protein YaaA


Domain annotation for each model (and alignments):
>> H2O2_YaaD  Peroxide stress protein YaaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.7   0.1   6.7e-97   1.2e-92       1     232 [.       1     243 [.       1     244 [. 0.97

  Alignments for each domain:
  == domain 1  score: 309.7 bits;  conditional E-value: 6.7e-97
   H2O2_YaaD   1 MlillSpAktldedsleakteetqpefleeaeellealkklseeelkkllkisdklaelnveryqefee....alkkkpAilaynGvvYkaldaeslse 95 
                 Ml+++SpAktld++s+ a+++ tqp++le++++l+++ ++ls++++++l++isdkla+ln+er+++++     + + ++Aila++G+vY++l+ae++se
  EHU02275.1   1 MLMVISPAKTLDYESPLATQHFTQPALLEKSQQLIQIARTLSPAQIASLMSISDKLAHLNAERFNSWHPdfslD-NARQAILAFKGDVYTGLQAETFSE 98 
                 9***************997555*********************************************9999853.6799******************** PP

   H2O2_YaaD  96 edleyaqehlrIlSglYGlLrpldliqpYRLemgtklanek..dLyefWgekltealne......eevlvnLaSkeyskavkpkklkakvitvvFkeek 186
                 +d+++aq+hlr+lSglYGlLrpldl+qpYRLemg klan +  dLy+fWg+ lte+lne      +++l+nLaS+ey+ka+kpkkl+a++i++vF++ek
  EHU02275.1  99 HDFDFAQQHLRMLSGLYGLLRPLDLMQPYRLEMGIKLANPAgqDLYSFWGDLLTEKLNEalarqgDDILINLASDEYFKAIKPKKLQARLIKPVFLDEK 197
                 **************************************99456**********************99******************************** PP

   H2O2_YaaD 187 ngklkvvsvyaKkaRGlmvryiaenriesveeLkefdeegYrfdee 232
                 ngk+kv+s+yaKkaRGlm r+i+++r++++e+L++fd egYrf +e
  EHU02275.1 198 NGKYKVISFYAKKARGLMSRFIIQQRLTQPEQLTRFDLEGYRFVAE 243
                 *******************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2083.02
//
Query:       EHU02276.1  [L=317]
Description: transaldolase B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-103  346.4   0.0   1.4e-103  346.2   0.0    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.2   0.0  7.7e-108  1.4e-103       1     287 []      14     313 ..      14     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 346.2 bits;  conditional E-value: 7.7e-108
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddte 92 
                 +v+Dt+d++++k +++    q++TtNPsli++a++   y++l+deai++++++     ++ ++++dkLav+++le+l+l+  +gr+s+EVdarls+dte
  EHU02276.1  14 VVADTGDIAAMKLYQP----QDATTNPSLILNAAQipeYRKLIDEAIAWARQQSndkeQQLQLVSDKLAVNIGLEILKLV--PGRISTEVDARLSYDTE 106
                 69**************....*******************************9999999999*******************..***************** PP

                 HHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT.............S-HHHH CS
     TAL_FSA  93 atieeArrlialye.....renvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleek.dklkgkddgval 185
                 a+i++Ar li+ly+     ++++lIK+++t++Gi+A+++L+keGin+n+Tl+Fs++qa+a+aeag+++iSpFvgRi+d++k++++k ++  ++d+gv +
  EHU02276.1 107 ASIAKARSLIKLYNdagisNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVYLISPFVGRILDWYKANTDKkEYAPHEDPGVVS 205
                 ********************************************************************************66665559*********** PP

                 HHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH.....................................HHHHHHHHH CS
     TAL_FSA 186 vkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkt.seklee.....eeieklleklfrlginedavaeelldegikkFak 278
                 v+eiynyyk++gy+T vm+asfrnv e++elagcd++Ti+p+ll++la+++   ++kl       +  ek++e++f +++n+d +a+++l+egi++Fa 
  EHU02276.1 206 VSEIYNYYKQHGYETVVMGASFRNVGEIIELAGCDRLTISPALLKELAESEGSlERKLSYsgevkARPEKMTESEFLWQHNQDPMAVTKLAEGIRNFAI 304
                 *************************************************999962444445333355566***************************** PP

                 HHHHHHH-X CS
     TAL_FSA 279 dlekllasl 287
                 d+ kl+++l
  EHU02276.1 305 DQGKLEKML 313
                 *****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2577.78
//
Query:       EHU02277.1  [L=195]
Description: putative molybdochelatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-29  101.4   0.0    4.3e-29  101.0   0.0    1.1  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   2.4e-33   4.3e-29       2     138 ..       8     147 ..       7     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 2.4e-33
                    EEEE-HHHHTTSSGBHHHHHHHHHHHT...TSEEEEEEEEE-SSHHHHHHHHHHHHHTS..SEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHH CS
  MoCF_biosynth   2 vitvGdellsgkieDtngpllaellke...lgvevskytvvpDdeeeikeallaaleea..dviittGGtGptpdDvtpealaklfekelegfeea 92 
                     i+v+d+ ++g ++D+  p l ++l+      +e++ +++vpD+   i++a+++ ++e    +++ttGGtGp+++Dvtp+a+ ++ ++e++gf+e+
     EHU02277.1   8 LISVSDRAANGIYQDQGIPALEAWLSGaisTPFELE-TRLVPDEQPMIEQAICELVDERfcHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ 102
                    69************************6333566665.569************888888889*********************************** PP

                    HHHHHHHHCCTTSHGGGGGGE.EE....TTE..EEEE-SSHHHHHHHHHHHH CS
  MoCF_biosynth  93 frrvslkpgkpvgvapgailsrav....gkt..iigLPGspkavkealeeil 138
                    +r++slk      ++p+ailsr+v    + +  i++LPG pk++ke+le ++
     EHU02277.1 103 MRQISLK------FVPTAILSRQVgvirK-QslILNLPGQPKSIKETLEGLK 147
                    *******......8*************63.44577*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1622.85
//
Query:       EHU02278.1  [L=435]
Description: L-proline/glycine betaine transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-25   89.4  70.3      3e-23   82.3  44.0    2.6  2  MFS_1      Major Facilitator Superfamily
    4.3e-21   75.3  29.0    4.6e-18   65.3   7.0    2.1  2  Sugar_tr   Sugar (and other) transporter
     0.0088   14.6  19.7      0.044   12.3  16.9    2.4  2  MFS_2      MFS/sugar transport protein
  ------ inclusion threshold ------
       0.66   10.2  10.4      0.082   13.1   0.9    2.9  3  DUF4381    Domain of unknown function (DUF4381)
          6    6.1   7.5       0.54    9.5   1.4    2.1  2  7tm_1      7 transmembrane receptor (rhodopsin family)
        7.7    6.1  14.1        2.3    7.9   0.1    3.1  4  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3  44.0     1e-26     3e-23      37     334 ..      62     366 ..      20     386 .. 0.73
   2 !   21.0  18.3   4.5e-08   0.00013      43     173 ..     289     419 ..     285     430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1e-26
       MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigll 126
                 ++++ +l+  ++ +++++++d++Gr++++ l++ll+al  l++++++       +  + l+l+lr+lqG++ g+ +p++ +++a+ +p ++ g a g l
  EHU02278.1  62 IFAAGYLARPLGGIIMAHFGDKVGRKKMFSLSILLMALPtLAMGALPtwssiglA-APlLMLLLRMLQGAAIGGEVPGAWVFVAEHVPYKRIGIACGTL 159
                 55556666699****************************4444444233233432.4447*************************************** PP

       MFS_1 127 sagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwilliall 217
                 +ag  +G++lg +++ l+ + l         Wr +f++ ++++l a+ l   +l e+p+  + +  k++    ++ pl+++  + +k+  + ++l+++ 
  EHU02278.1 160 TAGLTIGILLGSVVATLINTTLTqqaihdggWRIPFFLGGAFGLGAMYL-RRWLHETPVFVEMQQRKTL---AQELPLKTVVMKHRKSVAI-SILLTWM 253
                 *******************88888*********************9775.6777777776666666666...3666666633333333333.4444444 PP

       MFS_1 218 lfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgf 316
                 l + ++  +  + p++lq+++g++   l++ + +++ ++ +++++++g l+dr+g  r+l  + +ll+l++ +++ la+  ++  l l++ l+G+ +g+
  EHU02278.1 254 LSA-CIVVVILMAPVWLQKQHGMA-PALTLKANSIAIIMLCVGCIVSGLLVDRFGTSRTLSTGSVLLALCSGLFYSLAPQ-HPDYLFLLYGLAGLSVGV 349
                 443.7888999*************.6777777***********************9888888888888888888888888.444444444555555554 PP

       MFS_1 317 vfpsllalasdlappeea 334
                  ++++  ++++ +p+e +
  EHU02278.1 350 -VGIVPFVMVRAFPAEVR 366
                 .34444444444444444 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.5e-08
       MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpl 139
                 +  +v+ ++ G l+drfG  r+l +g +l+al+ +l+ ++a++++ +l++l  l+Gl  g++  +  +++++  ++ + +     +++++++   l+p+
  EHU02278.1 289 IMLCVGCIVSGLLVDRFGTSRTLSTGSVLLALCsGLFYSLAPQHPdYLFLLYGLAGLSVGVVGIVPFVMVRAFPAEVRFTGLSFSYNLSYAVFGGLTPI 387
                 566888999************************6666667899**********************999999988888888888889999999999**** PP

       MFS_1 140 lggllasslgWravfyilaivsllafvlfllllp 173
                    ll+ +++  a+ + + +++l+++++  ++l+
  EHU02278.1 388 CVTLLM-NVSPLAPGWYVMALALVGLIV-SVWLR 419
                 *99999.777666666666666665553.34444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   7.0   1.5e-21   4.6e-18       4     209 ..      19     230 ..      16     236 .. 0.92
   2 !   16.0  14.0   1.4e-06    0.0042     251     434 ..     240     416 ..     231     419 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 1.5e-21
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT... CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk... 99 
                 +aalgg l+ Yd+ +  +f+++++   +f ++  ++  +   +++ +i+++ ++ + +G++++  +gd++GRkk +  +++l+   ++ ++a +     
  EHU02278.1  19 LAALGGALEFYDFIIFVFFAAVIG-ELFFPADIPDWLRQ---LQTFAIFAAGYLARPLGGIIMAHFGDKVGRKKMFSLSILLMALPTLAMGALPTWssi 113
                 79**********************.88999999999666...69*****************************************99999998844666 PP

                 ..SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 100 ..nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilllfl 191
                    +  ++++ R+l G ++G++   + ++++E  p k  g+  +    ++t+Gil+++++ + +n+t       + gwri+++l  ++ l  ++l+ +l
  EHU02278.1 114 glAAPLLMLLLRMLQGAAIGGEVPGAWVFVAEHVPYKRIGIACGTLTAGLTIGILLGSVVATLINTTLTqqaihDGGWRIPFFLGGAFGLGAMYLRRWL 212
                 67788888888*****************************************************88877789*99************************ PP

                 ---HHHHHHTT-HHHHHH CS
    Sugar_tr 192 PESPrylvekgkeeeake 209
                  E+P +  +++++  a+e
  EHU02278.1 213 HETPVFVEMQQRKTLAQE 230
                 *******99999888776 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.4e-06
                 ...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.. CS
    Sugar_tr 251 vrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakska 347
                 +r+ + i ++l ++   + + +i+  +  + ++ g+ +   l ++ i +++  v ++v+ +lvdrfG  ++l +G++  a+c  ++     l ++    
  EHU02278.1 240 HRKSVAISILLTWMLSACIVVVILMAPVWLQKQHGMAPAltLKANSIAIIMLCVGCIVSGLLVDRFGTSRTLSTGSVLLALCSGLFY---SLAPQHP-- 333
                 57788888999988888876666666666888999999999999*********************************9999998774...3444443.. PP

                 .CHHHHHHHHHHHHHHHTT.TTHHHHHHHHHHSHTTTHHHHHHHHHHHH.HHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 348 asivaivfialfialfalg.wgpvpwvlvsElfpqsvRskalaiavavn.wlanflisllfpiiteaigggyvflvfaglavlfiifvf 434
                   ++++   +   a  ++g +g vp+v+    fp +vR ++l+++++++  ++  l+ ++ + +++ +     +++ ++la++++i+ +
  EHU02278.1 334 -DYLFLLYGL---AGLSVGvVGIVPFVM-VRAFPAEVRFTGLSFSYNLSyAVFGGLTPICVTLLMNVSP-LAPGWYVMALALVGLIVSV 416
                 .555555444...444555155566555.779**************97526899*******99999999.8888888888888877654 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   2.7    0.0053        16     268     341 ..      66     145 ..      44     155 .. 0.65
   2 !   12.3  16.9   1.5e-05     0.044      51     339 ..      71     358 ..      70     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0053
       MFS_2 268 vtisallgiplwqplakrlgkkntyllgalltivllvlvlll......qpsnlllflvllviagfgvgvaallpwsmlad 341
                  +++  lg ++++ +  + g+k+++ l++ll+++ ++ + +l      + +  ll+l+l ++ g ++g+ +  +w ++a+
  EHU02278.1  66 GYLARPLGGIIMAHFGDKVGRKKMFSLSILLMALPTLAMGALptwssiGLAAPLLMLLLRMLQGAAIGGEVPGAWVFVAE 145
                 34444466666777777777888888888888777777777755555555556666666666666666666666666665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.5e-05
       MFS_2  51 pivGtlidktstrwGrrr....PwlllsaiilavsiillftppelsqsakfiwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvl 145
                 p+ G+++ +   + Gr +    + ll+++++la++ +  +++++l  +a +++ll+   +l+ +    e+p     ++    y+    + +      ++
  EHU02278.1  71 PLGGIIMAHFGDKVGRKKmfslSILLMALPTLAMGALPTWSSIGL--AAPLLMLLL--RMLQGAAIGGEVPGAWVFVAEHVPYKRIGIACGTLTAGLTI 165
                 566888888888889888777788999999999999999999884..333333332..2345566677888555544444667766777777778889* PP

       MFS_2 146 ggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvln 244
                 g +l++++a+l+   l++ +    g++i  +++ +  l+++++  +     v ++ +++++ ++ l+l   + +  ++ a  ill+  l a   +++l 
  EHU02278.1 166 GILLGSVVATLINTTLTQQAIHDGGWRIPFFLGGAFGLGAMYLRRWLHETPVFVEMQQRKTLAQELPLKTVVMKHRKSVAISILLTWMLSACIVVVILM 264
                 ******************99**********************997776666555777777777778888777777777777777777777666555555 PP

       MFS_2 245 glllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsml 339
                 + +   l++  g + +       +++i+  +g ++   l+ r+g  +t   g++l+++ + l++ l p++   +++l+ +ag++vgv +++p  m+
  EHU02278.1 265 APVW--LQKQHGmAPALTLKANSIAIIMLCVGCIVSGLLVDRFGTSRTLSTGSVLLALCSGLFYSLAPQHPDYLFLLYGLAGLSVGVVGIVPFVMV 358
                 5554..455555455555555555788888****************999999999999999999999*************************9997 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   6.4e+03      27      49 ..     196     225 ..     189     235 .. 0.43
   2 ?    1.9   1.1     0.081   2.4e+02      20      44 ..     250     273 ..     232     286 .. 0.79
   3 ?   13.1   0.9   2.7e-05     0.082       5      41 ..     386     419 ..     383     427 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.1
     DUF4381  27 alllllllvlalwllrrrkrn.......rr 49 
                 +l  ++ l++++++++ + ++       r+
  EHU02278.1 196 FLGGAFGLGAMYLRRWLHETPvfvemqqRK 225
                 333344444444443333333555444333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.081
     DUF4381  20 Gwwlllaalllllllvlalwllrrr 44 
                  +w+l  a++++++l++ +wl +++
  EHU02278.1 250 LTWMLS-ACIVVVILMAPVWLQKQH 273
                 468888.788889999999998876 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 2.7e-05
     DUF4381   5 DihlPepvswwPpapGwwlllaalllllllvlalwll 41 
                 +i +   + + P+apGw+++++al+ l++ v+   l+
  EHU02278.1 386 PICVTLLMNVSPLAPGWYVMALALVGLIVSVW---LR 419
                 55555566789**********66555444444...33 PP

>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.4   0.00018      0.54      90     126 ..     232     268 ..     229     303 .. 0.66
   2 ?   -1.0   0.5      0.29   8.6e+02     145     168 ..     372     395 ..     345     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00018
                 TTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1  90 plkykrkrtkrravllillvWvlslllsvpllvletv 126
                 plk+ +++ ++ +++ ill+W+ls++++v++l+    
  EHU02278.1 232 PLKTVVMKHRKSVAISILLTWMLSACIVVVILMAPVW 268
                 677888899999****************999975444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHTHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 145 svyiifsavlsfilPllvivilya 168
                  +y++ +av++ + P++v++++++
  EHU02278.1 372 FSYNLSYAVFGGLTPICVTLLMNV 395
                 579999999999999999999986 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00076       2.3     140     171 ..     151     182 ..     146     195 .. 0.81
   2 ?    6.2   2.5    0.0025       7.4      87     169 ..     218     308 ..     205     329 .. 0.60
   3 ?   -3.8   0.2       2.8   8.4e+03     146     157 ..     339     350 ..     338     367 .. 0.78
   4 ?   -2.9   0.0       1.5   4.4e+03     156     168 ..     408     420 ..     390     430 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00076
   CPP1-like 140 klgravlltlvgLvvGlllGsllasllqvdva 171
                 ++g a ++  +gL +G+llGs++a+l++++ +
  EHU02278.1 151 RIGIACGTLTAGLTIGILLGSVVATLINTTLT 182
                 66778888899**************9977543 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0025
   CPP1-like  87 sldtPssedlliraavflvlavltlvapaes.....vpalllalglgasiyflnrKek...klgravlltlvgLvvGlllGsllasllqvd 169
                 ++++ ++++l++++ + +v++     ++ +        a ++++ l+a ++++++  +     ++a  +++++L+vG ++++ll+  + ++
  EHU02278.1 218 FVEMQQRKTLAQELPLKTVVMKHRKSVAISIlltwmLSACIVVVILMAPVWLQKQHGMapaLTLKANSIAIIMLCVGCIVSGLLVDRFGTS 308
                 55555555555555555555444444433333334334455566666666666666666656789******************99877544 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.8
   CPP1-like 146 lltlvgLvvGll 157
                 l++l+gL+vG++
  EHU02278.1 339 LYGLAGLSVGVV 350
                 789999999975 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.5
   CPP1-like 156 lllGsllasllqv 168
                 +l+G +++++l++
  EHU02278.1 408 ALVGLIVSVWLRQ 420
                 2345555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3170.41
//
Query:       EHU02279.1  [L=58]
Description: hypothetical protein CKS_5115 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 468.14
//
Query:       EHU02280.1  [L=636]
Description: chaperone Hsp70, co-chaperone with DnaJ [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-267  887.6  14.9   3.6e-267  887.4  14.9    1.0  1  HSP70     Hsp70 protein
    1.8e-14   53.3   1.9    7.7e-12   44.7   0.4    2.5  2  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
        1.1    9.7  11.0        8.9    6.8   0.9    3.9  3  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  887.4  14.9  6.1e-271  3.6e-267       1     598 [.       4     603 ..       4     604 .. 0.99

  Alignments for each domain:
  == domain 1  score: 887.4 bits;  conditional E-value: 6.1e-271
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 +iGiDLGttns+vavm+g+k++v++n+eg+rttPs++a+t++ e lvG++Akrqavtnp+nt+f++KrliGr+f+d+evq++ik +pyk+v ++ng+a+
  EHU02280.1   4 IIGIDLGTTNSCVAVMDGTKARVLENAEGDRTTPSIIAYTQDgETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDIKIMPYKIVGADNGDAW 102
                 69************************************************************************************************* PP

                 EEEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSX CS
       HSP70  99 veveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggt 197
                 +ev+  g+k++p qisa vLkk+k+tae++lg++vt+avitvPaYfndaqRqatkdAg+iAGL+v Ri+NepTAaalaYGldk + +r+++vyDlGggt
  EHU02280.1 103 LEVK--GQKMAPPQISAEVLKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGQGNRIIAVYDLGGGT 199
                 ****..********************************************************************************************* PP

                 EEEEEEEEE..TT..EEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEE CS
       HSP70 198 fdvSilele..kG..vfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlse 291
                 fd+Si+e++  +G  +fev+aT+gDthlGGedfD++l+++lv+efkk++gidl++d+ a+qrlkeaaekaK+eLSs++qt++nl+++t+d++g k+l++
  EHU02280.1 200 FDISIIEIDdvDGekTFEVLATNGDTHLGGEDFDSRLINYLVAEFKKDQGIDLHNDSLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGpKHLNI 298
                 ********95546668*********************************************************************************** PP

                 EEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBE CS
       HSP70 292 klsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvt 390
                 k++R+k+e+lvedl++r +ep++ al+da+l++++i++v+lvGG+tR+P vq +v e+fgkep+k+vnpDeava+GAAvq+gvl g  +vkd+lllDvt
  EHU02280.1 299 KVTRSKLESLVEDLVARSIEPLKVALQDAGLSVSDINDVILVGGQTRMPLVQAKVTEFFGKEPRKDVNPDEAVAVGAAVQGGVLGG--DVKDVLLLDVT 395
                 **************************************************************************************..*********** PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pLslgiet+ggvmt li++nttiptk+sqvfsta+dnq+av+i+vlqger+ ++dnk+lg+f+ldgi+paprG+pqieVtfdida+Gil+vsakdk++g
  EHU02280.1 396 PLSLGIETMGGVMTSLISKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGIQPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 494
                 *************************************************************************************************** PP

                 CEEEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHH CS
       HSP70 490 keeeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkk 588
                 ke++iti+as+gl+e+ei+kmv+dae++ae+d+k +e ++++n+ +++++s++k+l+e+++k+s+++k+ +e+a+++L+++l++e+k+ei ak+++l +
  EHU02280.1 495 KEQKITIKASSGLNEDEIAKMVRDAEANAESDRKFEELVQTRNQGDQIAHSTRKQLDEAGDKLSADDKAPIEAALSALETALKGEDKAEIDAKMQALME 593
                 *************************************************************************************************** PP

                 HHHHHHHHHH CS
       HSP70 589 vvekiaekly 598
                 v++k++e+++
  EHU02280.1 594 VSSKLMEAAQ 603
                 ****999765 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00031       1.9       3      48 ..       4      56 ..       2      76 .. 0.68
   2 !   44.7   0.4   1.3e-15   7.7e-12      75     316 ..     117     376 ..     109     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00031
                EEEEEE-SSEEEEEETT..TEEEEEE.......ES-EEEETTT--EEEESHHHHT CS
    MreB_Mbl  3 dlgiDLGtantlvyvkg..kgivlne.......psvvAikkktkkvlavGeeAkk 48
                 +giDLGt+n  v v +  k  vl++       ps++A++++ +++  vG+ Ak+
  EHU02280.1  4 IIGIDLGTTNSCVAVMDgtKARVLENaegdrttPSIIAYTQDGETL--VGQPAKR 56
                69********999776533677886433333338888888776655..5666665 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 1.3e-15
                 HHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EE.EEEE-SS-EEEEEEETTEEEEEEE CS
    MreB_Mbl  75 eellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnm.vvdiGggttevavislggivtsks 172
                 +e+lk++ k +++    + ++ vi+vP   ++ +r+A k+a + aG +   +i+ep aAA+  gl+  + +  + v d+Gggt ++++i + ++   k+
  EHU02280.1 117 AEVLKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGQGNRIIaVYDLGGGTFDISIIEIDDVDGEKT 215
                 5666666666655555577889******************************************99665544332569*************99865555 PP

                 ES-.........SHHHHHHHHHHHHHHHHSEE--.............HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHH CS
    MreB_Mbl 173 vrv.........aGdeldeaiikyirkkynlliG.............ertaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealkep 249
                   v         +G+++d+ +i+y+  +++   G             ++ aek kie++sa +++ +        d +     +++v+ +++++ +++ 
  EHU02280.1 216 FEVlatngdthlGGEDFDSRLINYLVAEFKKDQGidlhndslamqrlKEAAEKAKIELSSAQQTDVNLP--YITADATGPKHLNIKVTRSKLESLVEDL 312
                 4332222222339***********988886443311112111122223568888888888877766652..2334545555567899999********* PP

                 HHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 250 vsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                 v++ +e +k +L+++    ++di    ++l+GG + +  ++  ++e +g + +   +p ++va G++
  EHU02280.1 313 VARSIEPLKVALQDAGLS-VSDIN--DVILVGGQTRMPLVQAKVTEFFGKEPRKDVNPDEAVAVGAA 376
                 ************997655.57885..59999*******99999999999999999999999999975 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2     0.002        12       1      27 [.       5      28 ..       5     176 .. 0.72
   2 ?    6.8   0.9    0.0015       8.9       2      63 ..     192     299 ..     191     375 .. 0.61
   3 ?    1.1   0.4     0.091   5.5e+02      28      52 ..     501     527 ..     485     618 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.002
                EEEEE-SSSEEEEEEETTEEEEEEEES CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvig 27
                +++D+G++ ++vav+++    + rv+ 
  EHU02280.1  5 IGIDLGTTNSCVAVMDGT---KARVLE 28
                58*************996...455544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0015
                 EEEE-SSSEEEEEEETTEEEE...EEEES-......-HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--............ CS
                 xxxxxxxxxxxxxxxxxxxxx...xxxxxx......xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx............ RF
        FtsA   2 lvDiGagktdvavaedgalvh...lrvigv......ggngitkd...................iakalrtaveeAerikikyGsala............ 60 
                 + D+G+g+ d++++e + +     ++v+ +      gg+ +++                     + a++   e+Ae+ ki+  sa +            
  EHU02280.1 192 VYDLGGGTFDISIIEIDDVDGektFEVLATngdthlGGEDFDSRlinylvaefkkdqgidlhnDSLAMQRLKEAAEKAKIELSSAQQtdvnlpyitada 290
                 669*************99888788666666555555555555556666555555557777666444556667777777777777766666666666555 PP

                 ......EEE CS
                 ......xxx RF
        FtsA  61 ......eke 63 
                       + +
  EHU02280.1 291 tgpkhlNIK 299
                 554444333 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.091
                 -.-HHHHHHH.HHHHHT--HHHHHHHH CS
                 x.xxxxxxxx.xxxxxxxxxxxxxxxx RF
        FtsA  28 v.ggngitkd.iakalrtaveeAerik 52 
                 + +++g+++d iak++r a ++Ae+  
  EHU02280.1 501 IkASSGLNEDeIAKMVRDAEANAESDR 527
                 457888888899999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1230  (0.0686039); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.37
# Mc/sec: 5147.60
//
Query:       EHU02281.1  [L=380]
Description: chaperone Hsp40, co-chaperone with DnaK [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-45  153.6   0.0      5e-45  153.2   0.0    1.1  1  DnaJ_C           DnaJ C terminal domain
    2.4e-27   94.8   4.7    4.2e-27   94.1   4.7    1.4  1  DnaJ             DnaJ domain
    5.6e-15   55.5  17.6    9.5e-15   54.7  17.6    1.4  1  DnaJ_CXXCXGXG    DnaJ central domain
    3.4e-06   27.0   6.6     0.0011   18.9   0.2    2.5  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
    0.00023   21.0  13.5     0.0045   16.9   2.0    3.2  4  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
  ------ inclusion threshold ------
       0.26   11.8  14.0        5.5    7.5  14.1    2.7  2  Cytochrom_c3_2   Cytochrome c3
        0.3   11.4  23.6        2.3    8.6   0.2    4.6  4  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
        5.2    7.1   8.1         11    6.1   8.1    1.5  1  zinc-ribbons_6   zinc-ribbons


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   2.2e-48     5e-45       2     148 .]     122     334 ..     121     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 2.2e-48
                 EEEEEE-HHHHHH-.EEE.EEEE.....................................................................TEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................xxxxxxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi..............................................................kkekktlevki 38 
                 ++++e++lee+++G+tk+i+i   ++                                                              ++++ktl+vki
  EHU02281.1 122 RYNMELTLEEAVRGVTKEIRIPTLEEcdvchgsgakagtkpqtcstchgagqvqmrqgfftvqqacptchgrgsvikdpcnachghgrVEKSKTLSVKI 220
                 799******************99988*************************************************************777777****** PP

                 -TT--TT-EEEETT-SS..SS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-EET.. CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  39 paGikdgqkirlegeGd..eeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmpklkk 132
                 paG+++g++irl+geG+  e+g+++GDl+v+++vk+hp+F+r++n+ly+ev+i++a a+lGg++evptldg+vklk+   tq+g+ +r++g+G+++++ 
  EHU02281.1 221 PAGVDTGDRIRLSGEGEagEQGAPAGDLYVQVTVKKHPIFEREENNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVpaeTQTGKLFRMRGRGVKSVR- 318
                 *****************98888***************************************************************************8. PP

                 .TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxx RF
      DnaJ_C 133 pgkrGdlyvevkvefP 148
                 +g  Gdl+++v ve+P
  EHU02281.1 319 GGAVGDLLCRVVVETP 334
                 **************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   4.7   1.9e-30   4.2e-27       1      63 []       5      67 ..       5      67 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 1.9e-30
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyYeiLgv+k+a+e eIkkaY++la+kyHPD+np+d++ae kFke +eAye+L+d++kR++YD
  EHU02281.1  5 DYYEILGVAKSADEREIKKAYKRLAMKYHPDRNPGDKDAETKFKEAKEAYEILTDAQKRAAYD 67
                8*************************************************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7  17.6   4.2e-18   9.5e-15       1      67 []     148     208 ..     148     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 4.2e-18
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+ C+Gsgak+g+ ++tC+tC+G G+v+++q   g+f+  +q+ Cp+C+G+G+vi  kd+C++C+G+g
     EHU02281.1 148 CDVCHGSGAKAGTkPQTCSTCHGAGQVQMRQ---GFFT--VQQACPTCHGRGSVI--KDPCNACHGHG 208
                    *********99666***********988888...3444..679************..999******86 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   4.9e-07    0.0011      36      72 ..     133     169 ..     116     170 .. 0.79
   2 !   10.1   1.8   0.00028      0.64      46      72 ..     182     205 ..     171     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.9e-07
  Cytochrome_C7  36 ekgkskkaeves.ltCgaCHdgknafsvakkaeCakCH 72 
                     +g  k++++ +  +C+ CH +  +   +k ++C++CH
     EHU02281.1 133 VRGVTKEIRIPTlEECDVCHGSGAKA-GTKPQTCSTCH 169
                    455566677778777*****999999.5799******* PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00028
  Cytochrome_C7  46 es.ltCgaCHdgknafsvakkaeCakCH 72 
                    +   +C +CH +  +     k+ C+ CH
     EHU02281.1 182 TVqQACPTCHGRGSVI----KDPCNACH 205
                    23344********999....89****** PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.0     2e-06    0.0045       4      47 ..     140     179 ..     137     183 .. 0.87
   2 !   11.5   2.3   9.7e-05      0.22      12      42 ..     164     196 ..     162     199 .. 0.80
   3 !    7.2   4.0    0.0021       4.7      11      41 ..     185     209 ..     182     214 .. 0.90
   4 !    5.2   0.2     0.009        20      11      25 ..     199     213 ..     196     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2e-06
                 S-HHHCEEE-TTTTTTSEETTE......E-TTTTTSSEEE-HHH CS
   Anti-TRAP   4 ialpeLEtkCdaCngsGkiepeeprasleCPkCsGkglipTaqG 47 
                 i++p LE+ Cd C+gsG  ++++p+    C  C G g +   qG
  EHU02281.1 140 IRIPTLEE-CDVCHGSGAKAGTKPQ---TCSTCHGAGQVQMRQG 179
                 78999996.*************665...7*******99888777 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.7e-05
                 E-TTTTTTSEETTE........E-TTTTTSSEE CS
   Anti-TRAP  12 kCdaCngsGkiepe..eprasleCPkCsGkgli 42 
                 +C +C+g+G+++           CP C G+g +
  EHU02281.1 164 TCSTCHGAGQVQMRqgFFTVQQACPTCHGRGSV 196
                 8**********999333455678******9965 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0021
                 EE-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgl 41 
                 ++C++C+g G +  +      +C +C G+g 
  EHU02281.1 185 QACPTCHGRGSVIKD------PCNACHGHGR 209
                 68*************......********96 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.009
                 EE-TTTTTTSEETTE CS
   Anti-TRAP  11 tkCdaCngsGkiepe 25 
                  +C+aC+g G++e  
  EHU02281.1 199 DPCNACHGHGRVEKS 213
                 589999999999876 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  14.1    0.0024       5.5       8      79 ..     147     205 ..     136     207 .. 0.69
   2 ?    6.1   9.1    0.0069        15       8      40 ..     164     198 ..     156     221 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
                     TGGGTSSSST-SSTTHHHHHHHHHHH--HHHCHTTSST.TSSBTTSSCTSSS-GGGTS-TTTSBT-GGGGT- CS
  Cytochrom_c3_2   8 kCadCHtkekpkkdkaveeekClsCHgkleelakktkeakeanphkshekeleCteCHkeHkksekvCaeCH 79 
                     +C+ CH++  +   + ++ ++C +CHg  +   +          +  ++ + +C +CH   +  ++ C+ CH
      EHU02281.1 147 ECDVCHGSGAK---AGTKPQTCSTCHGAGQVQMR----------QGFFTVQQACPTCHGRGSVIKDPCNACH 205
                     56667766664...34455667777765544222..........2345688899999999999999999999 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0069
                     TGGGTSSSST-SSTT..HHHHHHHHHHH--HHHCH CS
  Cytochrom_c3_2   8 kCadCHtkekpkkdk..aveeekClsCHgkleela 40 
                     +C++CH+  +++ ++   + +++C +CHg+ + ++
      EHU02281.1 164 TCSTCHGAGQVQMRQgfFTVQQACPTCHGRGSVIK 198
                     79999998876666644556777888888765544 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.7     0.027        61      13      24 ..     147     158 ..     144     163 .. 0.77
   2 ?    5.8   2.5    0.0078        18      12      23 ..     163     174 ..     158     175 .. 0.85
   3 ?    8.6   0.2     0.001       2.3       3      22 ..     176     195 ..     174     200 .. 0.84
   4 ?    7.0   0.5    0.0033       7.5      12      28 ..     199     215 ..     195     233 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.027
  Cytochrome_CBB3  13 nCasCHgkggag 24 
                       C  CHg+g+++
       EHU02281.1 147 ECDVCHGSGAKA 158
                      7******88664 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0078
  Cytochrome_CBB3  12 knCasCHgkgga 23 
                      ++C++CHg+g++
       EHU02281.1 163 QTCSTCHGAGQV 174
                      79******8875 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.001
  Cytochrome_CBB3   3 aaaGaalykknCasCHgkgg 22 
                      +++G  + +++C +CHg g 
       EHU02281.1 176 MRQGFFTVQQACPTCHGRGS 195
                      68888899*********876 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0033
  Cytochrome_CBB3  12 knCasCHgkggagpsla 28 
                        C++CHg g + +s++
       EHU02281.1 199 DPCNACHGHGRVEKSKT 215
                      56******998876554 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.1    0.0047        11       2      47 ..     147     203 ..     146     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0047
                     --SSS-S--E.E-SSEEE-TTT--.........EEEEEEE-SSS-S---EEEE.TTE CS
  zinc-ribbons_6   2 kCpeCqqele.krgeqyhCeaCqe.........dlkkealCpeCeqelevlka.Cga 47 
                     +C  C+       ++  +C++C+           +++++ Cp+C+ + +v+k  C a
      EHU02281.1 147 ECDVCHGSGAkAGTKPQTCSTCHGagqvqmrqgFFTVQQACPTCHGRGSVIKDpCNA 203
                     6999*9999956668899*****99999999988999********999988752444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 2986.11
//
Query:       EHU02282.1  [L=392]
Description: sodium-proton antiporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.8e-148  493.3  27.7   4.3e-148  493.2  27.7    1.0  1  Na_H_antiport_1  Na+/H+ antiporter 1


Domain annotation for each model (and alignments):
>> Na_H_antiport_1  Na+/H+ antiporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.2  27.7  2.4e-152  4.3e-148       2     376 .]      13     387 ..      12     387 .. 0.98

  Alignments for each domain:
  == domain 1  score: 493.2 bits;  conditional E-value: 2.4e-152
                      XXXX-HHHHHHHHHHHHHHHHHHHHSC.CHHHHHHHHT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSTTTTHHHHH CS
  Na_H_antiport_1   2 eflkseaaggilLllaavlalilansp.laesYealletelalelgelelelsleewindgLmaiFFlvvglEikrellvGeLsslrkaalpvi 94 
                      +f++s+a+ g++L+laav+a++lans+ +a+ Y+allet++++++gel+++++l  wind+Lma+FFl++glE+krel+ GeL+s+ +a++pvi
       EHU02282.1  13 SFIESDASNGMVLILAAVVAMVLANSAsTAQGYQALLETPVQIRFGELDISKNLLLWINDALMALFFLLIGLEVKRELISGELASRDRAVFPVI 106
                      799***********************8799**************************************************************** PP

                      HHHHHHHHHHHHHHSTTTTSTT.GGGTGSTT---HHHHHHHHTTSGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHS-TT--HHHHHHHHHHHHH CS
  Na_H_antiport_1  95 aAlgGmvvPaliylllnageea.akGwaipmaTDiAFalgvlallgkrvpaslkvfLlaLAivDDlgailviAlfYtselsllalllalvvlal 187
                      aAlgGm++Pa+++ll+n+g+e   +Gwaip+aTDiAFalgvlallg+rvp++lkvfL+aLAi+DDlgai++iAlfYts+ls+++l +a+ ++++
       EHU02282.1 107 AALGGMAAPAILFLLFNHGDEIaRNGWAIPTATDIAFALGVLALLGSRVPTALKVFLMALAIIDDLGAIIIIALFYTSDLSVTSLSVAVGAIVV 200
                      ******************9999899********************************************************************* PP

                      HHHHHHTT---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS--S.......-HHHHHHHHHHHHHHHTHHHHHHHHHS---SSSS--ST.T CS
  Na_H_antiport_1 188 llllnrlgvrslllylllgvvlWvlvlksGvhatiaGvllallipakkklkeeesplerlehalhplvaflilPlFAlanagvslegeslseal 281
                      l++lnr++vr++++y+l+g+vlW++vlksGvhat+aGv++++++p+++  k+ +sp+e+l h l p+v++lilPlFA+anag+sl+g ++++ +
       EHU02282.1 201 LAILNRCNVRNIAVYMLVGLVLWTAVLKSGVHATLAGVVVGFFVPLEE--KDGHSPAEHLAHGLMPWVNWLILPLFAFANAGISLTGITFGD-V 291
                      **********************************************97..5678************************************99.9 PP

                      TSHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTT--TTS-TTTHHHHHHHHTT--HHHHHHHHHHHSTT.....HHHHHHHHHHHHHHHHHHHHH CS
  Na_H_antiport_1 282 lspvtlgivlgLvlGKplGillasllavklklaklpeglswkqllgvallaGiGFTmslfiaelafeeeeee.leeaklgiLlgsllaavlgll 374
                      lsp  lgi+lgL++GKplGi+l+++lav l+la lp+g+++++++++++l+GiGFTms+fi++laf++ +e+ ++ +klgiL+gsll+avlg++
       EHU02282.1 292 LSPEPLGIILGLLIGKPLGITLFCWLAVTLRLAVLPNGTTLRDIMAIGVLCGIGFTMSIFISSLAFDAAHEQlVTFSKLGILSGSLLSAVLGYT 385
                      *******************************************************************866667999*****************9 PP

                      TT CS
  Na_H_antiport_1 375 ll 376
                      ll
       EHU02282.1 386 LL 387
                      86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3031.80
//
Query:       EHU02283.1  [L=87]
Description: SSU ribosomal protein S20p [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-27   94.4  15.0    5.5e-27   94.2  15.0    1.0  1  Ribosomal_S20p  Ribosomal protein S20
  ------ inclusion threshold ------
      0.013   15.8   0.6      0.014   15.6   0.6    1.1  1  ToxN_toxin      Toxin ToxN, type III toxin-antitoxin system
       0.04   14.2   0.4      0.066   13.5   0.4    1.4  1  UPF0253         Uncharacterised protein family (UPF0253)


Domain annotation for each model (and alignments):
>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2  15.0   9.2e-31   5.5e-27       1      82 []       2      84 ..       2      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 9.2e-31
                    ..SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHHHHH CS
  Ribosomal_S20p  1 ANikSakKrirqnekrrlrNrsyksavrtaiKkvraaiea.dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlakkin 82
                    ANikSakKr+ ++ekrr++N s++s++rt++Kkv aai++ dk++aq+a+++++  +d+ a+kg+ihkN+AaR+k++l+++in
      EHU02283.1  2 ANIKSAKKRAVTSEKRRKHNASRRSMMRTFVKKVYAAIASgDKAAAQNAFNEMQPIVDRQAAKGLIHKNKAARYKANLTAQIN 84
                    9*************************************889***************************************997 PP

>> ToxN_toxin  Toxin ToxN, type III toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.6   2.4e-06     0.014      49     114 ..      12      84 ..       3      87 .] 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-06
  ToxN_toxin  49 lssak.ekhkkmknnvdfikike......kkkkllgalnlnnMiPvpdevleeldinkeekekykdLLqkelk 114
                 ++s k +kh+  + ++    +k+      + +k  ++  +n+M P+ d +  +  i+k++  +yk+ L ++++
  EHU02283.1  12 VTSEKrRKHNASRRSMMRTFVKKvyaaiaSGDKAAAQNAFNEMQPIVDRQAAKGLIHKNKAARYKANLTAQIN 84 
                 5666535666666665444444455599889999**************9999999999999****99999876 PP

>> UPF0253  Uncharacterised protein family (UPF0253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.1e-05     0.066       7      56 ..      31      77 ..      27      82 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
     UPF0253  7 lirelyaqIgsgdlgYipdAiscalktLdevaanealpeevrekAAyAAA 56
                 ++++ya+I+sgd++   +A +     +d+ aa+  + +   +kAA   A
  EHU02283.1 31 FVKKVYAAIASGDKAAAQNAFNEMQPIVDRQAAKGLIHK---NKAARYKA 77
                69*************999988777666666666655543...44554445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1104  (0.0615762); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 712.42
//
Query:       EHU02284.1  [L=308]
Description: riboflavin kinase/FAD synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-57  192.0   0.0    7.7e-57  191.6   0.0    1.2  1  FAD_syn          FAD synthetase
    1.2e-39  135.1   0.0    1.9e-39  134.4   0.0    1.3  1  Flavokinase      Riboflavin kinase
     0.0014   18.8   0.0     0.0032   17.7   0.0    1.7  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   1.3e-60   7.7e-57       3     158 .]      12     167 ..      10     167 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 1.3e-60
     FAD_syn   3 eedegavvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevlakekaparLttleeklelleelgvdavlvvdFtkefaelsaeeFiekl 101
                 ++++g+v+t+GnFDGvH+GHqal+ +++e+ ++++lp++v++Fep+P e++a  +aparLt+l+ekl++l+e+gvd+vl+v+F+++fa+lsa+ Fi++l
  EHU02284.1  12 AQHHGCVLTIGNFDGVHRGHQALMGRLMEEGRKRQLPVMVMVFEPQPLELFAGGNAPARLTRLREKLRYLAEIGVDYVLCVRFDHRFAALSAQSFISEL 110
                 6899*********************************************************************************************** PP

     FAD_syn 102 lveklkvkavvvGfdfrfGkkregdvellkelgaklgfevevvpkveleeekissta 158
                 lv+kl+v++++vG+dfrfG++r+gd+ ll+++g ++gf+v +++++++++++issta
  EHU02284.1 111 LVSKLGVNYLAVGDDFRFGAGRQGDFLLLQKAGVEYGFDVVSTETFCDGGKRISSTA 167
                 *******************************************************95 PP

>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   3.1e-43   1.9e-39       1     111 []     184     306 ..     184     306 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 3.1e-43
                  HTS-EEEEEEEES-SSCHTTTT--EEEEE-S-B-.GTSEEEEEEEE........EEEEEEEETTTSS.E..EEEEETT--S--TTSEEEEEEEEEEEE CS
  Flavokinase   1 LgrpyslsgkVvkGkkrGrelgfpTaNlelekll.pkkGVYavrvk........gvaniGvrptfkn.k..vEvhildfsedlygkelrvellkflRp 86 
                  Lg+p+s+sg+Vv+G+ +Gr+lgfpTaNl+l++++ p kGVYav+v+        gvaniG+rpt+k+ +  +Evh+ld++ dlyg++++v l +++R+
   EHU02284.1 184 LGHPFSISGRVVHGDALGRTLGFPTANLPLRRCVsPVKGVYAVEVEglgpkplpGVANIGTRPTVKGlRqqLEVHLLDINMDLYGRHIDVVLKQKIRN 281
                  89****************************77776******************************995257*************************** PP

                  ----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  87 ekkFdsleaLkaqikkDvekarell 111
                  e++F+sl+aLk+qi+kD  +ar+++
   EHU02284.1 282 EQRFASLDALKEQIAKDTVTARQFF 306
                  *********************9986 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.4e-07    0.0032       1     142 [.      19     170 ..      19     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.4e-07
                      EEEE--TT--HHHHHHHHHHHHHSSES...EEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH................ CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed...livgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltr................ 74 
                      l+ G+FD +H GH +l+ ++ +++ +    ++v+v  ++p   +     +a  Rl  l++  ++  e i vd   ++r                
       EHU02284.1  19 LTIGNFDGVHRGHQALMGRLMEEGRKRqlpVMVMVFEPQPLELF--AGGNAPARLTRLREKlRYLAE-IGVDYVLCVRfdhrfaalsaqsfise 109
                      578*************************9988889999998888..445555566666655455555.66666666666666679999999998 PP

                      HHHHHTTTTEEEEEEEHHHHHHHHCHH...HHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  75 evlkklkpdklylvigadvledfsewk...eleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                       ++ kl+++  yl++g+d    + +      l++   ++++ vvs +       +      + iSst +r+
       EHU02284.1 110 LLVSKLGVN--YLAVGDDFRFGAGRQGdflLLQKAGVEYGFDVVSTE------TFC--DGGKRISSTAVRQ 170
                      899999999..999999976665333333334444444444444433......122..2234466666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2683.56
//
Query:       EHU02285.1  [L=939]
Description: isoleucyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.9e-225  747.9   0.0   8.2e-225  747.6   0.0    1.0  1  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
      3e-28   98.7   0.0    5.2e-28   97.9   0.0    1.4  1  Anticodon_1    Anticodon-binding domain of tRNA
    1.5e-19   70.1   0.2    5.5e-10   38.6   0.0    3.4  3  tRNA-synt_1g   tRNA synthetases class I (M)
    1.1e-10   41.2   4.7    1.1e-10   41.2   4.7    3.0  3  zf-FPG_IleRS   Zinc finger found in FPG and IleRS
    6.1e-08   32.4   0.0    1.1e-05   25.0   0.0    2.3  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
      1e-05   24.6   0.0     0.0001   21.4   0.0    2.3  2  tRNA-synt_1f   tRNA synthetases class I (K)
     0.0041   16.7   0.0     0.0085   15.6   0.0    1.5  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.059   13.4   2.9      0.094   12.8   1.1    2.1  2  DZR            Double zinc ribbon


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  747.6   0.0  3.7e-228  8.2e-225       2     601 ..      28     641 ..      27     642 .. 0.97

  Alignments for each domain:
  == domain 1  score: 747.6 bits;  conditional E-value: 3.7e-228
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  ++++W +++++   +e++k kk+fil+dgPPy++Gs+HiGh+++k+lkdi++++k m G++++yvpGwD++Gl+ie+kve+++g+ ++    k++++e
   EHU02285.1  28 MLQRWYDDNLYGIIREAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGMAGYDSPYVPGWDCHGLPIEHKVEQMIGKPGE----KVTAAE 121
                  799**********************************************************************************997....9***** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpladk 197
                  fre +r+++ae++e ++ ++ rlGv  D+dr+ylT+d+ +e+++++++++++ +g++++g+k+v+w++++++al+e+Evey+dk++++i+v f++ d 
   EHU02285.1 122 FREACRKYAAEQVEGQKADFIRLGVLGDWDRPYLTMDFTTEANIIRALGKIIGNGHLHKGAKPVHWCMDCRSALAEAEVEYYDKTSPSIDVMFNAVDA 219
                  **********************************************************************************************9666 PP

  tRNA-synt_1 198 ee.............vklviaTTtPeTllgdtavavnpeldyv...itkeklilaeallkslvkke.sek.kiledergkeLegkevelpl.vnrkip 276
                  ++             v+lvi+TTtP+T++++++++++pe+dy    i++++lila++l++s++k+  +++ ++l + +g+ Le + +++p+ ++ +++
   EHU02285.1 220 DAvraafgvtasegpVSLVIWTTTPWTMPANRGISLHPEFDYQllqIEGRSLILAKDLVESVMKRAgVSHwTVLGTCQGAALELQLFQHPFlAQIQSK 317
                  666777888888889****************************999*******************997778*******************967889** PP

  tRNA-synt_1 277 iiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpii 373
                  ++ +d+v+ +aGtG+V++aP+h++dDy +g+ky+le++n++  dg +   + +  +g++vf+a++ +ve lkekg+ll++ek  hs+p+c+r+k+pii
   EHU02285.1 318 VVLGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGAYLPGTyPGLDGINVFKANELIVELLKEKGALLHVEKLLHSYPHCWRHKTPII 415
                  **********************************************99887699******************************************** PP

  tRNA-synt_1 374 yrateqWfvrvke..ladaalkavekvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvre.elkelvagreeeeaekkaleke 468
                  +rat+qWf+++++  l++++lk+++ vq++p+++++r++s+++n++dWciSRqr+WG++++lfv+ketee++ ++ +l+e va+r+e+++ +++++ +
   EHU02285.1 416 FRATPQWFISMDQkgLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMALFVHKETEELHPDTlSLMEKVAQRVEQDGIQAWWDLD 513
                  ************999**********************************************************999********************** PP

  tRNA-synt_1 469 akdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSK 566
                    d ++++++++ k++d+lDvWF+Sgs+ +s+++     ++e+      dm+leG+D++rgW+++++++s+a++g++P+++vl+hg+++d++GrKmSK
   EHU02285.1 514 PRDLMGDDADNYVKVPDTLDVWFDSGSTSYSVVD----ARPEFG-GNTPDMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSK 606
                  **********************************....6899*9.6666************************************************* PP

  tRNA-synt_1 567 slgNvidpldvikkygadalRltlilsdvgrdinl 601
                  s+gN+++p+dv++k+gad+lRl+++++d++ ++++
   EHU02285.1 607 SIGNTVAPQDVMDKLGADILRLWVASTDYSGEMAV 641
                  ******************************99986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   2.3e-31   5.2e-28       1     151 [.     686     842 ..     686     843 .. 0.88

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.3e-31
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqreeeel 96 
                  drw++ + + + +++ ++ye+y+f++++++l++f++ ++ ++yl+++k+r y++++++  r+ +q++l++++e+l+r++aP+m f+++e+w    + l
   EHU02285.1 686 DRWAVGRAQAAQADIVAYYEHYDFHEVIQRLMQFCSIEMGSFYLDIIKDRQYTAKGDSLaRRsCQSALWHIVEALVRWMAPVMSFTADEIW----GYL 779
                  9******************************************************9777*888****************************....666 PP

  Anticodon_1  97 ..gkkesimlaewpekaeel.ekel.e....eeevellkeivkairklrselkikpsselkvv 151
                    ++ + ++ +ew      l e+e+ +     e ++++ e++k+i+++rs++ i+ + e++v 
   EHU02285.1 780 pgDRAKYVFTEEWYTGLFGLpENEAlNdaywAELLKVRGEVNKVIEQARSDKRIGGALEASVT 842
                  4334499******85333335555453478899*********************999998875 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.4e-13   5.5e-10       8     135 ..      58     200 ..      53     208 .. 0.62
   2 !    8.1   0.1   0.00044      0.98     159     238 ..     395     476 ..     385     489 .. 0.75
   3 !   19.2   0.0   1.9e-07   0.00042     310     356 ..     585     632 ..     566     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.4e-13
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH......TTS-HHHHHHHHHHH.......HHHHHHHTT-..--SEEE CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek......egvtpeelvekvhee.......ikelfkklni..sfdkyg 89 
                   pYang++H+Gh ++ i  Di+++ k + g++  +v g D hG pie k e+      e+vt++e+ e  ++        +k++f +l++   +d  +
    EHU02285.1  58 PYANGSIHIGHSVNKILKDIIVKSKGMAGYDSPYVPGWDCHGLPIEHKVEQmigkpgEKVTAAEFREACRKYaaeqvegQKADFIRLGVlgDWDRPY 154
                   9*********************************************999973333334555554433333320001111334444444422233333 PP

                   ETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG- CS
  tRNA-synt_1g  90 rttseehkelvqeifkklkekgliyekeieqlycpkderflpdryv 135
                    t + + +    + + k+  +g++ +++  + +c ++ + l++ +v
    EHU02285.1 155 LTMDFTTEANIIRALGKIIGNGHLHKGAKPVHWCMDCRSALAEAEV 200
                   3333333333333334455566666666666666666666666555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00044
                   -E..................EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 159 leptelin..pksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP 238
                   l+ ++l    p++   ++  +++ t ++f ++++   + ++  e +  ++     +   e + ++  d++isr+  wG+p++
    EHU02285.1 395 LHVEKLLHsyPHCWRHKTPIIFRATPQWFISMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMA 476
                   55555543227888888888999********99998888888877777877666666555555669**************97 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1.9e-07
                   ---S-EEEE--.EEE--------------HHHHHHHH-HHHHHHHHHH CS
  tRNA-synt_1g 310 klpkkvvahey.ltvegkKlSkSrgvvvkakealerldadllRYylaa 356
                      ++v +h++ +  +g+K+SkS g+ v +++++++l ad+lR ++a+
    EHU02285.1 585 APYRQVLTHGFtVDGQGRKMSKSIGNTVAPQDVMDKLGADILRLWVAS 632
                   34578999999446799**************************99887 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       2.6   5.7e+03      22      27 ..     186     191 ..     182     193 .. 0.86
   2 ?    0.7   0.2      0.22   4.9e+02       5      13 ..     405     413 ..     405     419 .. 0.78
   3 !   41.2   4.7   4.9e-14   1.1e-10       1      29 [.     899     927 ..     899     928 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.6
                   EE-TTT CS
  zf-FPG_IleRS  22 yfCprC 27 
                   ++C+ C
    EHU02285.1 186 HWCMDC 191
                   9***99 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                   TTT--BBEE CS
  zf-FPG_IleRS   5 pRCwryier 13 
                   p+Cwr+ + 
    EHU02285.1 405 PHCWRHKTP 413
                   89***9765 PP

  == domain 3  score: 41.2 bits;  conditional E-value: 4.9e-14
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   Ge+CpRCw+y+++vgq++++  +C rC++
    EHU02285.1 899 GEKCPRCWHYTTDVGQNPEHAAVCGRCYT 927
                   9**************************96 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0056        12      21      52 ..      62      93 ..      45     203 .. 0.79
   2 !   25.0   0.0   4.8e-09   1.1e-05     228     299 ..     577     649 ..     554     651 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0056
                  S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEE CS
  tRNA-synt_1e 21 dashlGhaRslvafDilrrilqalgYdvqfvq 52
                    +h+Gh+ + +  Di+ +   ++gYd  +v 
    EHU02285.1 62 GSIHIGHSVNKILKDIIVKSKGMAGYDSPYVP 93
                  579************************99985 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 4.8e-09
                   HHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-HHHHHHH CS
  tRNA-synt_1e 228 qseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfkeelleea 299
                    s+a+ +  ++ +   h   +  +g+kmsks++n +  +dv+ k  + +lRl ++s++y  ++  ++e l+++
    EHU02285.1 577 ISTAMKGkAPYRQVLTHGFTVDGQGRKMSKSIGNTVAPQDVMDKLGADILRLWVASTDYSGEMAVSDEILKRS 649
                   5778888455666666777789999*****************************************9999875 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   2.6e+02       2      56 ..      31      83 ..      30     132 .. 0.76
   2 !   21.4   0.0   4.5e-08    0.0001     241     338 ..     563     659 ..     558     672 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
  tRNA-synt_1f  2 aWadklaeklieerkkkkaekdevvvesGi.spSGliHiGnlrevltadlvaralr 56
                   W d     +i+e kk   +k++ ++  G   + G+iHiG   + +  d+++++  
    EHU02285.1 31 RWYDDNLYGIIREAKK---GKKTFILHDGPpYANGSIHIGHSVNKILKDIIVKSKG 83
                  5888888888865544...456777777751578******9998888888887655 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.5e-08
  tRNA-synt_1f 241 GkDhaaaGgSvdvsskiaeilggeaPek..vvYelillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldldleilrlvdeYdkl 335
                   G D +   g +  s  i+  ++g+aP+   ++  +  + +g+kms+S Gn ++++d+++ +  ++lr+ ++++    ++ ++ +  + r  d Y ++
    EHU02285.1 563 GSDQHR--GWFMSSLMISTAMKGKAPYRqvLTHGFTVDGQGRKMSKSIGNTVAPQDVMDKLGADILRLWVASTDYSGEMAVSDE-ILKRSADAYRRI 656
                   566666..6677777888999999998621344555555666******************************999999999999.9999*****999 PP

  tRNA-synt_1f 336 erk 338
                   ++ 
    EHU02285.1 657 RNT 659
                   876 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-06    0.0085      90     142 ..     307     360 ..     226     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.8e-06
  tRNA-synt_1_2  90 ihPit.gekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikp 142
                     hP+  + +  + + ++v  + gtgav + P+h   D+   +ky+l+  + + p
     EHU02285.1 307 QHPFLaQIQSKVVLGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGP 360
                    57877566788999********************************98876665 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.88     2e+03      14      23 ..     187     196 ..     177     202 .. 0.63
   2 ?   12.8   1.1   4.2e-05     0.094       1      23 [.     902     930 ..     902     936 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.88
         DZR  14 fCseCgtklk 23 
                  C +C+++l 
  EHU02285.1 187 WCMDCRSALA 196
                 4555555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.2e-05
         DZR   1 CpqCgee......lppdarfCseCgtklk 23 
                 Cp+C++       +p++a +C++C t+l 
  EHU02285.1 902 CPRCWHYttdvgqNPEHAAVCGRCYTNLA 930
                 **************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6368.91
//
Query:       EHU02286.1  [L=167]
Description: prolipoprotein signal peptidase (signal peptidase II) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-37  126.9  11.3    7.4e-37  126.7  11.3    1.0  1  Peptidase_A8  Signal peptidase (SPase) II
  ------ inclusion threshold ------
       0.13   12.5   4.0      0.075   13.4   2.3    1.7  2  DUF1772       Domain of unknown function (DUF1772)
       0.39   10.3   8.7       0.11   12.1   5.7    1.6  2  YhhN          YhhN family
       0.58    9.5   6.1        1.3    8.3   6.1    1.6  1  ThrE          Putative threonine/serine exporter


Domain annotation for each model (and alignments):
>> Peptidase_A8  Signal peptidase (SPase) II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7  11.3   1.7e-40   7.4e-37       2     140 ..      16     156 ..      15     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.7e-40
  Peptidase_A8   2 allllllDqltKllvvenlktesve.vipgffkltyveNrgaafglle..sgakrkllillslvvilllivlllkkkkkskllrialalilgGalGN 95 
                   +l+++++D ++K +v++n+  ++++ ++  f++l y +N+gaaf++l+  +g++r++++ ++l++++ l+v+++++++++k+++ a+ali+gGa+GN
    EHU02286.1  16 VLVVIVVDFVSKQWVMNNMMLHETQpLM-PFLNLFYAHNYGAAFSFLAdkGGWQRWFFAGIALAIVVSLLVMMYRNSAQQKIANSAYALIIGGAVGN 111
                   899************8888887555255.5****************999999**********878777888888887889***************** PP

  Peptidase_A8  96 liDrllygkVvDfldfsleliefpvFNvADvaitvGvilliiall 140
                   l+Dr+++g VvDf+df + +++f++FN+AD+ i++G++l++++ +
    EHU02286.1 112 LFDRAYHGFVVDFIDFYIGNWHFATFNIADCGICIGAALVVLEGF 156
                   ***************************************998766 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.83   3.7e+03      61      72 ..       9      20 ..       6      42 .. 0.63
   2 ?   13.4   2.3   1.7e-05     0.075      32      92 ..      36      93 ..      19     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.83
     DUF1772 61 garllylaaaal 72
                g r+l+l++ ++
  EHU02286.1  9 GLRWLWLVLVVI 20
                556777443332 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.7e-05
     DUF1772 32 fkrgkavfpplallsalafaylaaraasrgarllylaaaallllsivpyTllvmvPtNnkL 92
                ++  + ++p+l l  a  ++++++  a++g +  ++  a+++l   ++++llvm+  N++ 
  EHU02286.1 36 LHETQPLMPFLNLFYAHNYGAAFSFLADKGGWQRWFF-AGIAL--AIVVSLLVMMYRNSAQ 93
                4444778888888888888866677888888999956.55545..5889*******9*773 PP

>> YhhN  YhhN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.32   1.4e+03      83     103 ..      14      34 ..       5      52 .. 0.46
   2 ?   12.1   5.7   2.5e-05      0.11      60     147 ..      49     152 ..      30     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.32
        YhhN  83 llllllllaaavllalllprl 103
                 +l+l+++++  v   ++++++
  EHU02286.1  14 WLVLVVIVVDFVSKQWVMNNM 34 
                 333334444444444555555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.5e-05
        YhhN  60 FllaHilYivafleqratstlslllllllllaaavllalllprlgklkipvlvYalvistmvatAlesl.................lslsslaallaal 141
                 F +      ++fl +++  + +++++++ l++++ ll++++++ ++ ki+  +Yal+i+  v   ++++                 +++++ a   +++
  EHU02286.1  49 FYAHNYGAAFSFL-ADKGGWQRWFFAGIALAIVVSLLVMMYRNSAQQKIANSAYALIIGGAVGNLFDRAyhgfvvdfidfyignwhFATFNIADCGICI 146
                 5555555566677.7777888888999999999999999*******************98887766666667677777777777777777777777777 PP

        YhhN 142 GallFv 147
                 Ga+l v
  EHU02286.1 147 GAALVV 152
                 777665 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.1    0.0003       1.3     102     170 ..      38     107 ..      32     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0003
        ThrE 102 skpryprwlvvlaaglaaaafallf.ggdwidflvaflagllggllrlllakrglnsfvleavaaflasl 170
                 ++++  ++l ++ a   +aaf++l+ +g+w+  + a +a +++  l  ++ + +  + +++ + a++++ 
  EHU02286.1  38 ETQPLMPFLNLFYAHNYGAAFSFLAdKGGWQRWFFAGIALAIVVSLLVMMYRNSAQQKIANSAYALIIGG 107
                 5566778899999999***************999888887777777777777777777777776666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1264.89
//
Query:       EHU02287.1  [L=156]
Description: FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-13   50.5   0.0    3.2e-13   49.8   0.0    1.4  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.077   12.4   0.0    1.4  1  ProQ_C    ProQ C-terminal domain


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   3.5e-17   3.2e-13       5      74 ..       5     107 ..       2     141 .. 0.74

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.5e-17
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT.............................. CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge.............................. 73 
                 +++++ V +h+++kledg+v +s+r  +kp+ f++G+g +  ++e+al g+k+G+k +++  pe+a+g                               
  EHU02287.1   5 VQRDSAVLLHFVLKLEDGSVAESTRASGKPALFRLGDGSLSGALEQALLGLKAGDKHQFSLAPEEAFGGvspdliqyfsrrdfneagepeigaimlftg 103
                 688899**************************************************************9777777777777776666666666666644 PP

                 ...T CS
      FKBP_C  74 ...k 74 
                     
  EHU02287.1 104 mggS 107
                 4441 PP

>> ProQ_C  ProQ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.6e-06     0.077      15      36 ..     104     125 ..     103     127 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.6e-06
                 SSSS---EEEEEE-SSSEEEEE CS
      ProQ_C  15 lGkspmpAtileiaKddVrVqL 36 
                 +G s mp++i ei+ d+++V  
  EHU02287.1 104 MGGSEMPGVIREINGDSITVDF 125
                 799****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1179.98
//
Query:       EHU02288.1  [L=316]
Description: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-91  306.6   0.0    1.4e-91  306.4   0.0    1.0  1  LYTB             LytB protein
  ------ inclusion threshold ------
      0.027   14.5   0.1      0.069   13.2   0.1    1.6  1  ETF_alpha        Electron transfer flavoprotein FAD-binding d
      0.047   13.6   0.0      0.076   12.9   0.0    1.5  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
       0.11   12.2   0.0       0.21   11.3   0.0    1.5  1  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai


Domain annotation for each model (and alignments):
>> LYTB  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.4   0.0   3.1e-95   1.4e-91       1     263 [.       3     282 ..       3     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: 306.4 bits;  conditional E-value: 3.1e-95
                 EEE-TT-SS-HHHHHHHHHHHHHHCCC-S.EEECS-SSS-HHHHHHHHHCTEEEESSSST.....EEEE-TT---HHHHHHHHHTTEEEEE---HHHHH CS
        LYTB   1 illaksaGfCfGVerAieiaeealeekke.vyvlgeivHNeqvverLeekgvkfieelee.....vviirAhGvskeveeelkekglevvDatCplVkk 93 
                 illa+++GfC+GV+rAi+i+e+al+ +++ vyv++e+vHN+ vv++L+++g +fie+ +e     ++i++AhGvs++v++e+k+++l+v+DatCplV+k
  EHU02288.1   3 ILLANPRGFCAGVDRAISIVENALTLFGApVYVRHEVVHNRYVVDSLRQRGSIFIEQISEvpdgaILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTK 101
                 789****************************************************99765334557********************************* PP

                 HHHHHHHHHHCT-EEEEES-TT-HHHHHHHCC...T--TEEEESSCHHHHHG......CEEEEE-TTS-HHHHHHHHHHHHHHSTCEEE..C-S--CHH CS
        LYTB  94 vqkevkklakegyeiviiGkkkHpEvegilgq...aeekvvvveeseevekl......kvalvsQTTlsveefeeivealkkklkelev..kdtiCkat 181
                 v+ ev++++++g e v+iG+++HpEveg++gq    +  +++ve+ ++v kl      ++ +++QTTlsv++++e+++al+++++++    kd+iC+at
  EHU02288.1 102 VHMEVARASRRGEESVLIGHAGHPEVEGTMGQynnPKGGMYLVESPDDVWKLdvkdhdRLSFMTQTTLSVDDTSEVIDALRARFPKIVGprKDDICYAT 200
                 ********************************432244599998877777778889999****************************9999******** PP

                 HHHHHHHHHHHGHSSEEEEES-TT-HHHHHHHHHHHHCSCTEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH CS
        LYTB 182 qeRqeavkelakevdlvivvGgknSsNtkkLveiakeknkktyliesaeeldeewlegvkkvgitaGaStpeelieeviekl 263
                 ++Rqeav++la+e+d+v+vvG+knSsN+++L+e+a++ +k +yli++ae++++ew+++++ vg+taGaS+p+ l+++vi++l
  EHU02288.1 201 TNRQEAVRALAEEADVVLVVGSKNSSNSNRLAELAQRMGKAAYLIDDAEDIQPEWIAAARCVGVTAGASAPDILVQNVISRL 282
                 *******************************************************************************998 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.5e-05     0.069       4      72 ..     212     280 ..     210     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
                 TT-S-EEEE-GGGSSGGGHHHHHHHHHHHT-EEEE-HHHHTT..TSS-CCCB-SSSS-----S-EEEES-- CS
   ETF_alpha   4 eeakvvvsgGrGlkskenlelleelaealgaavgasRavvda..gwipeerqvGqtGktvaPklyiavGis 72 
                 eea+vv+++G   k+++n + l+ela+ +g a      + d   +wi ++r vG t    aP++++   is
  EHU02288.1 212 EEADVVLVVGS--KNSSNSNRLAELAQRMGKAAYLIDDAEDIqpEWIAAARCVGVTAGASAPDILVQNVIS 280
                 57889988876..6778999**********766555555444448*******************9987766 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.076      14      56 ..     171     213 ..     158     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                      TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHH CS
  ELFV_dehydrog_N  14 dnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaal 56 
                       +++ evi + ra + + +gP k +i ++ +  ++ v+aLa +
       EHU02288.1 171 VDDTSEVIDALRARFPKIVGPRKDDICYATTNRQEAVRALAEE 213
                      455689***********************************87 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.7e-05      0.21      65      90 ..     201     226 ..     187     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
                   GGSCHHHHHHHHH-SEEEEES-SSST CS
  TPP_enzyme_M  65 lhgskaanealeeaDlvlalGarfdd 90 
                     +++a+++++eeaD+vl++G++ + 
    EHU02288.1 201 TNRQEAVRALAEEADVVLVVGSKNSS 226
                   4556777777899********87544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2692.59
//
Query:       EHU02289.1  [L=271]
Description: dihydrodipicolinate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-44  150.9   1.2      2e-44  150.5   1.2    1.2  1  DapB_C           Dihydrodipicolinate reductase, C-terminus
    1.2e-41  141.7   0.0    2.7e-41  140.6   0.0    1.6  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
     0.0083   16.4   0.2      0.022   15.0   0.1    1.9  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.022   14.6   1.1      0.033   14.1   0.8    1.5  1  NAD_binding_10   NAD(P)H-binding
      0.026   15.0   0.3      0.088   13.3   0.1    2.1  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
       0.49   10.8   2.0        2.8    8.3   0.3    2.5  3  Gp_dh_N          Glyceraldehyde 3-phosphate dehydrogenase, NA


Domain annotation for each model (and alignments):
>> DapB_C  Dihydrodipicolinate reductase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   1.2   6.8e-48     2e-44       1     121 []     130     266 ..     130     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 6.8e-48
                 HHHHHHHHHHHHCCCSTTT-EEEEEEEESTT--SSS-HHHHHHHHHHH......................-S-ETTCCCEEEETTT--CCCCEEEECTT CS
      DapB_C   1 GvnlllklveeaakllkeaydveiiEkHhnkKaDaPSGTAlalaeaia...............egke...arkkkeigihsvRgggvvgehevlfageg 81 
                 Gvnl+lkl+e+aa ++ +  d+eiiE+Hh++K+DaPSGTAla++eaia               e      +rk+++ig+++vR+g++vgeh+ +fa eg
  EHU02289.1 130 GVNLVLKLLEKAATVMGDYADIEIIEAHHRHKVDAPSGTALAMGEAIAdamdwkladhavysrE--GhtgERKAQTIGFATVRAGDIVGEHTAMFADEG 226
                 9*****************999***************************7777666665555443..0669999************************** PP

                 EEEEEEEEEESCHHHHHHHHHHHHHH.HCTSSEESHHHHH CS
      DapB_C  82 evieikhealsreiFaeGallaaewlakkkkglysmedvL 121
                 e++ei+h+a+sr +Fa+Ga++aa w++ kkkgly+m+dvL
  EHU02289.1 227 ERVEITHKASSRMTFANGAVKAALWVSAKKKGLYDMRDVL 266
                 **************************9************8 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   9.1e-45   2.7e-41       1     124 []       4     127 ..       4     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 9.1e-45
                 EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHTT-EEEE--S CS
      DapB_N   1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklalekgvklViGTT 99 
                 i++a+vGa GrmG+++++av +a+++el+aa+ r++s+l+g+dagel+g+gkl+v+v ddl +v++++dvliDFT+pe++l++l+l+ e++++++iGTT
  EHU02289.1   4 IRIAIVGAPGRMGRNLIQAVVHANGVELGAALARPGSSLIGTDAGELAGVGKLDVPVVDDLRAVMDDFDVLIDFTRPEGTLAYLALCREHRKAMIIGTT 102
                 79************************************************************************************************* PP

                 S--HHHHHHHHHHTTTSEEEE-S-- CS
      DapB_N 100 GlseeelaeleelakkigvviapNf 124
                 G++e+ +a ++++a ++g+v+a+Nf
  EHU02289.1 103 GFDEAGKAAIRDAATETGIVFAANF 127
                 ************************8 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   7.5e-06     0.022       1      97 [.       6      98 ..       6     124 .. 0.85
   2 ?   -2.6   0.0       2.1   6.2e+03      77      94 ..     145     162 ..     128     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.5e-06
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgvh 95
                     + i+Ga G++G+ +++ ++  + v  e+  a     +   l+ + +g+ +   +ld+  +++ L a++ + d++++ + p  +l+ l++C+e++ +
       EHU02289.1  6 IAIVGApGRMGRNLIQAVVHANGV--ELGAALARPGS--SLIGTDAGELAGVGKLDVPVVDD-LRAVMDDFDVLIDFTRPEGTLAYLALCREHRKA 96
                     679999999999999999999999..56655555555..66666689999999*********.******************************999 PP

                     EE CS
  Sacchrp_dh_NADP 96 yv 97
                     ++
       EHU02289.1 97 MI 98
                     87 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
                      SSGGGHHHHHHHHHHHT- CS
  Sacchrp_dh_NADP  77 sppissldvlkaCietgv 94 
                      ++++ + ++++a ++++v
       EHU02289.1 145 MGDYADIEIIEAHHRHKV 162
                      455666666666666665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.8   1.1e-05     0.033       1      90 [.      10     121 ..      10     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                     TTTSHHHHHHHHHHHHC-T-EE.EEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC..................... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghev.talvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk..................... 73 
                     GA G+ Gr l++  ++++g+e+  al+R  ++l    a e + v ++dv  v+dl++++++ d+ +  + ++g+                     
      EHU02289.1  10 GAPGRMGRNLIQAVVHANGVELgAALARPGSSLIGTDAGELAGVGKLDVPVVDDLRAVMDDFDVLIDFTRPEGTlaylalcrehrkamiigttgf 104
                     9********************9455788888887666667778899******************9988855555444444433322333333333 PP

                     HHHHHHHHHHHHHHCT- CS
  NAD_binding_10  74 deegaknivdaakeagv 90 
                     de g ++i daa e+g+
      EHU02289.1 105 DEAGKAAIRDAATETGI 121
                     55557777777777765 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.9e-05     0.088       1      70 [.       5      74 ..       5     103 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT..TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssr..saGkklaeavkaleegkdlkvedvdeeelkevdiv 70
                    ++aivGa G +G++l++ + +   vel ++l++      G+   e+++   ++ d++v d   + +++ d++
      EHU02289.1  5 RIAIVGAPGRMGRNLIQAVVHANGVELGAALARPGssLIGTDAGELAG--VGKLDVPVVDDLRAVMDDFDVL 74
                    69*************************999998873335665555544..4555555555344444666665 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3   0.00093       2.8       1      27 [.       4      31 ..       4      36 .. 0.88
   2 ?    1.0   0.0      0.18   5.3e+02       3      52 ..      99     148 ..      97     188 .. 0.67
   3 ?   -3.0   0.0       3.2   9.6e+03      76     100 ..     199     224 ..     196     225 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00093
                CEEEEEST.SHHHHHHHHHHHHHTTCEE CS
     Gp_dh_N  1 vkvainGf.GRIGrlvlralleekelev 27
                +++ai G  GR+Gr++++a+++ + +e+
  EHU02289.1  4 IRIAIVGApGRMGRNLIQAVVHANGVEL 31
                689999976************9998875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
                 EEEESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHHHHHHH.HEETTTEC- CS
     Gp_dh_N   3 vainGfGRIGrlvlralleekelevvaindltdletlayll.kyDsvhgrf 52 
                 ++  Gf   G+ ++r +++e+ + +   n ++ ++ + +ll k  +v+g +
  EHU02289.1  99 IGTTGFDEAGKAAIRDAATETGIVFA-ANFSVGVNLVLKLLeKAATVMGDY 148
                 77789999999999999988776544.444444444444441445556665 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.2
                 SSGGGS-CHHHTS.SEEEE-SSS--S CS
     Gp_dh_N  76 kdpeelpwkelgv.dlVvestGvftd 100
                 ++ + + ++ + + d+V e t +f d
  EHU02289.1 199 RKAQTIGFATVRAgDIVGEHTAMFAD 224
                 55666666665543789999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1924.65
//
Query:       EHU02290.1  [L=382]
Description: carbamoyl phosphate synthetase small subunit, glutamine amidotransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-53  178.5   0.0      7e-53  177.8   0.0    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    5.1e-49  166.6   0.0    8.2e-49  166.0   0.0    1.3  1  GATase           Glutamine amidotransferase class-I
    1.1e-07   31.9   0.2    9.4e-06   25.5   0.1    2.4  1  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.071   12.9   0.0       0.14   11.9   0.0    1.5  1  DJ-1_PfpI        DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.0   1.6e-56     7e-53       2     128 .]       5     132 ..       4     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.8 bits;  conditional E-value: 1.6e-56
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedvesekikvaglvvrelseepsnwraeesL 94 
                      a+LvLedGt f+G+++g +++avGEvvfnT+mtGYqeiltDpsY++qi++ltyp+iGn+G+n +d es++i+++glv+r+l   +sn+r+eesL
       EHU02290.1   5 ALLVLEDGTQFHGRAIGaTGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGANPADEESSQIHAQGLVIRDLPLIASNYRSEESL 98 
                      78***************779************************************************************************** PP

  CPSase_sm_chain  95 sewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      s++l++++i++i+++DTR+Lt+ lrekga++g+i
       EHU02290.1  99 SAYLQRNNIVAIADIDTRKLTRLLREKGAQNGCI 132
                      ********************************98 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.0   0.0   1.8e-52   8.2e-49       4     189 ..     198     372 ..     195     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.0 bits;  conditional E-value: 1.8e-52
                 ESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEE CS
      GATase   4 DnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehh 101
                 D++   ++n+++ lv +g++++vvp +++ae+   l++npdgi++s+Gpg+p+ ++ +ieai+ +++ +iP++GICLG+Qlla+++g+k+vk+k  +hh
  EHU02290.1 198 DYG--AKRNILRMLVDRGCRLTVVPAKTPAETV--LAMNPDGIFLSNGPGDPEpCDYAIEAIEAFLKTDIPVFGICLGHQLLALASGAKTVKMK-LGHH 291
                 666..99**********************9999..58*********************************************************.**** PP

                 EEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 102 ggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                 gg+++++d       ++++++i++++H+++v++   +pa+l+vt+ s  d+++ +i + ++p++++Q HPE++++p+++++lf+ +i+
  EHU02290.1 292 GGNHPVKD------LDNNRVMITAQNHGFAVDE-THLPANLRVTHISLFDKTVQGIHRTDKPAFSFQGHPEASPGPGDAAPLFDHFIE 372
                 ********......5666**************9.99**************99999999999************************997 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   2.1e-09   9.4e-06      93     216 .]     250     355 ..     238     355 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.1e-09
  Peptidase_C26  93 lelaLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavk.vekgsllaellgseeievnslHhqaike..laeel 185
                    + +  i+a l+ ++P++giC+G+qll+ a G ++++         +h        +h vk +++++++  +           H +a++e  l  +l
     EHU02290.1 250 YAIEAIEAFLKTDIPVFGICLGHQLLALASGAKTVKMKLG-----HH------GGNHPVKdLDNNRVMITAQ---------NHGFAVDEthLPANL 325
                    6788899**********************99876543222.....12......3345554123333332222.........355555554466667 PP

  Peptidase_C26 186 rveAvae.DgviEaieseeakafvlgvQwHPE 216
                    rv+ ++  D ++  i+ ++  +++++ Q HPE
     EHU02290.1 326 RVTHISLfDKTVQGIHRTD--KPAFSFQGHPE 355
                    7766666677777766666..24666666666 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05      0.14      63     116 ..     234     284 ..     207     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.2e-05
                 SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTS CS
   DJ-1_PfpI  63 DalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgr 116
                 D + l  G   p + + ++ ++e +  f++ + +v+ IC g qlLa a+  k  
  EHU02290.1 234 DGIFLSNG---PGDPEPCDYAIEAIEAFLKTDIPVFGICLGHQLLALASGAKTV 284
                 55555544...5577778899************************998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2927.57
//
Query:       EHU02291.1  [L=1076]
Description: carbamoyl-phosphate synthase large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-116  385.7   1.0    4.8e-76  254.9   0.0    2.3  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.1e-40  137.9   0.0    5.1e-40  136.6   0.0    1.7  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    3.4e-19   68.8   0.1    1.9e-18   66.5   0.0    2.4  2  MGS              MGS-like domain
    3.3e-14   52.8   0.1    7.2e-07   28.9   0.1    2.3  2  ATP-grasp        ATP-grasp domain
      1e-11   45.1   0.3    3.3e-08   33.8   0.0    2.6  2  ATP-grasp_3      ATP-grasp domain
    4.7e-11   42.5   0.1    5.1e-07   29.5   0.0    2.8  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
      3e-10   40.0   0.1    3.5e-05   23.4   0.1    2.3  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.2e-09   38.0   0.2    9.8e-05   22.0   0.0    4.3  4  ATP-grasp_4      ATP-grasp domain
      0.001   19.6   0.1        3.8    8.1   0.0    4.0  3  CoA_binding_2    CoA binding domain
     0.0032   17.0   0.0        5.1    6.5   0.0    3.4  3  ATP-grasp_5      ATP-grasp domain
  ------ inclusion threshold ------
      0.029   14.2   0.0      0.066   13.0   0.0    1.5  1  SmpA_OmlA        SmpA / OmlA family
       0.14   12.4   0.2        1.4    9.0   0.1    2.5  2  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.9   0.0   3.2e-79   4.8e-76       1     210 [.     128     334 ..     128     335 .. 0.99
   2 !  129.4   0.3   8.7e-41   1.3e-37       1     210 [.     674     876 ..     674     877 .. 0.95

  Alignments for each domain:
  == domain 1  score: 254.9 bits;  conditional E-value: 3.2e-79
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+++++ a+k i+ ++++s +a  +t+eeala+a+++g+P+ii+++f++GG+G+++a+n+ee++e+++++l+ ++    ++++l+++sl g+ke+E+e
   EHU02291.1 128 DRRRFDVAMKSIGLDTARSGIA--HTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSP----TNELLIDESLIGWKEYEME 219
                  9*********************..**************************************************7....9****************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEE.EEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgag.tveflldpkskeyyviEvNtRlsvesalaekaTGl 193
                  v+rD+++n+i+vc++en++++  +t+++i+vAP+qtLtd+e+q++r+a+++v+re+gv+++g +v+f+++pk+++ +viE+N+R+s++sala+kaTG+
   EHU02291.1 220 VVRDKNDNCIIVCSIENFDAMgiHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGsNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGF 317
                  **********************************************************98887*********************************** PP

                  -HHHHHHHHHTT--GCG CS
  CPSase_L_D2 194 dlvkeaakialgekLee 210
                  +++k+aak+a+g +L+e
   EHU02291.1 318 PIAKVAAKLAVGFTLDE 334
                  ***************97 PP

  == domain 2  score: 129.4 bits;  conditional E-value: 8.7e-41
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+e++++a++++  +    +++  +tle+a++ a+ igyP ++++++ lGG+ m ++++e +l+  +++a++ ++    ++ vl++++l+   e++v+
   EHU02291.1 674 DRERFQQAVDRLSLKQPANATV--TTLEQAVEKAAGIGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSN----DAPVLLDRFLDDAVEVDVD 765
                  99**********9998776666..**************************************************5....99***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                   + D +  v++ + +e + q   + +++    P+ tL+++  + +r++  k++ e++v+g  +v+f+++  ++e y+iEvN+R  +  +  +kaTG++
   EHU02291.1 766 AICDGE-RVLIGGIMEHIEQAgvHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRGLMNVQFAVK--DNEVYLIEVNPRAARTVPFVSKATGVP 860
                  ****86.56777899*9999999*********************************************9..59************************* PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+k+aa++ +g++L e
   EHU02291.1 861 LAKVAARVMAGKTLAE 876
                  *************986 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.0   3.4e-43   5.1e-40       2     122 .]     427     547 ..     426     547 .. 0.97

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 3.4e-43
  CPSase_L_D3   2 elkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk.eldeellreakklGfsDkqiaelleeeeeeevrelrkklgil 98 
                  elk++ ++Ri++ia+a+r+g+sv+ +++lt+id+wFL ++eelv+le++++++    l+++ lr +k++Gf D+++a+l++   e e+r+lr++++++
   EHU02291.1 427 ELKDAGSDRIWYIADAFRAGMSVDGVFNLTNIDRWFLVQIEELVRLEEQVAREGInGLNADFLRALKRKGFADARLAALAG-VAEGEIRKLRQQHHLH 523
                  789999*********************************************998889**********************76.77888*********** PP

  CPSase_L_D3  99 pvykrvDtcAaeFeaetpYlYstY 122
                  pvykrvDtcAaeF+++t+Y+YstY
   EHU02291.1 524 PVYKRVDTCAAEFATDTAYMYSTY 547
                  ***********************9 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   8.8e+03       4      19 ..     649     664 ..     648     665 .. 0.69
   2 !   66.5   0.0   1.2e-21   1.9e-18       2      94 ..     957    1041 ..     956    1042 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.9
                 HHHHHHHHTTCEEEEE CS
         MGS   4 elakklkelgfellAT 19 
                 +la++l+++g+ ++ T
  EHU02291.1 649 KLARALEAAGVPVIGT 664
                 5777777777777776 PP

  == domain 2  score: 66.5 bits;  conditional E-value: 1.2e-21
                  HHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEE CS
         MGS    2 lvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplp 94  
                  +v+la kl++ gfel AT+GTa +l eagi+  ++v+k++eg r++    i+d++knge+ +++nt+ +++a +  d++ irr a+++++ + 
  EHU02291.1  957 IVDLAAKLQKFGFELDATHGTAVVLGEAGIN-PRLVNKVHEG-RPH----IQDRLKNGEYAYIVNTTAGRQAIE--DSKLIRRSALQYKVHYD 1041
                  89*****************************.**********.***....*********************998..9*************985 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.3e-08   0.00014       2     161 ..     137     305 ..     136     313 .. 0.86
   2 !   28.9   0.1   4.8e-10   7.2e-07       3     160 ..     684     846 ..     682     849 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.3e-08
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC.....GTTCEEEEE----SEEEEEEEEEETTC-EEE--E CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal.....keekvivEefvpfekElsvlvvrsaeGetafypv 95 
                 ++ gl ++r  ++++ ee+ ++a+++g+p++++ +     G G  +  ++e+ e++ e       ++e +i E+ + + kE  + vvr+++ +  ++  
  EHU02291.1 137 KSIGLDTARSGIAHTMEEALAVAADVGFPCIIR-PSFTMGGTGGGIAYNREEFEEICERGldlspTNELLIDESLIGW-KEYEMEVVRDKNDNCIIVCS 233
                 57899****************************.99999999999999*99999999987788855566666666766.57888899************ PP

                 EEEEEETTEEE...EEEECEE-SCHHHHHHHHHHH.HHHHHHTS.SEEEEEEEEEE.TTCTEEEEEEESS-- CS
   ATP-grasp  96 vetvqedgilr...lsvapaevsekaqkkaeeiak.kiveeLgg.vGvfavElFvl.edgellvnElapRpH 161
                 +e+    gi     + vapa+  ++++ ++ + a+  +++e+g+  G   v + v  ++g+l+v E+ pR+ 
  EHU02291.1 234 IENFDAMGIHTgdsITVAPAQTLTDKEYQIMRNASlAVLREIGVeTGGSNVQFAVNpKNGRLIVIEMNPRVS 305
                 ********985333799****9999999999999889999999757889999888867788*********85 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 4.8e-10
                 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEE CS
   ATP-grasp   3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvve 97 
                 +l l+ p  ++v++ e++ e a+ +g+p+vv+ +     G+   +v +e dl++ ++++    ++ +v++  f +  +E+ v ++ + e  + +  ++e
  EHU02291.1 684 RLSLKQPANATVTTLEQAVEKAAGIGYPLVVR-PSYVLGGRAMEIVYDEIDLKRYFQTAvsvsNDAPVLLDRFLDDAVEVDVDAICDGER-VLIGGIME 780
                 5678888899999***999999**********.99999**************999999889989*****************999976554.77778888 PP

                 EEEETTEE....EEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS
   ATP-grasp  98 tvqedgil....rlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160
                 ++++ g+       s+  +++s+++q+  +++++k++ eL++ G++ v + v+ d+e+++ E+ pR 
  EHU02291.1 781 HIEQAGVHsgdsACSLPAYTLSQDIQNVMRQQVEKLAFELNVRGLMNVQFAVK-DNEVYLIEVNPRA 846
                 88887765222145666678889999999*******************97666.999********96 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00095       1.4      31     158 ..     163     304 ..     148     307 .. 0.73
   2 !   33.8   0.0   2.2e-11   3.3e-08       3     158 ..     674     846 ..     672     849 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00095
                  SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----HHHH CS
  ATP-grasp_3  31 ekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpietelkee 119
                    ++++ p+  +gg++  ++ ++ee e+++e            +    i  k++ ++++ d++++ +++++ +  +  + +   +  v+p++t  ++e
   EHU02291.1 163 GFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLdlsptnellIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKE 260
                  5689*******************99998888766889999995555566669******************9999987555444444566777666555 PP

                  HHHHHHHHHTTST....T--EEEEEEEEESS...SEEEEEEESS- CS
  ATP-grasp_3 120 vvelaeevvekle....glaGyvGvDlvlkd..eepyviEvNPRl 158
                   + + +  ++ l+    +  G   v + ++   + ++viE NPR+
   EHU02291.1 261 YQIMRNASLAVLReigvE-TGGSNVQFAVNPknGRLIVIEMNPRV 304
                  544444444444422133.34445888876555899********8 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 2.2e-11
                  SHHHHHHHHTTT.S---.........-EESS--.......SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEE CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP.....tkleaeeleee.......ekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvsl 79 
                  d  ++ ++ ++ ++k P     t      le++        ++lvv p++  gg ++ +v ++ ++++ +++          l+ +f++   ++ v++
   EHU02291.1 674 DRERFQQAVDRLSLKQPanatvT-----TLEQAvekaagiGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVsvsndapvLLDRFLDdAVEVDVDA 766
                  66667778888888999655332.....3333333355669******************99999998888877788899**999****73689***** PP

                  EE.SSSEEEEEEEEEEEET....TEEEEEEE...S----HHHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3  80 lsdgekvlvlavnrqliekaekefvyaGnvt...pietelkeevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNPRl 158
                  ++dge+vl+  + + + +      v +G ++   p+  +l++++++++++ vekl    +++G++ v + +kd+e y+iEvNPR 
   EHU02291.1 767 ICDGERVLIGGIMEHIEQA----GVHSGDSAcslPAY-TLSQDIQNVMRQQVEKLAfelNVRGLMNVQFAVKDNEVYLIEVNPRA 846
                  ******9999998877666....55666544110444.66888888888888888777799***********************6 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00042      0.63      53     114 ..     268     333 ..     251     345 .. 0.73
   2 !   29.5   0.0   3.4e-10   5.1e-07      51     116 ..     811     877 ..     748     890 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00042
  ATPgrasp_Ter  53 aerlaeefgld.glvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllglete 114
                   + ++ +e+g++ g  nvQ+  + ++  + ++E+NpR+s      s ++G  ++++a+kl+ g   +
    EHU02291.1 268 SLAVLREIGVEtGGSNVQFAVNPKNgrLIVIEMNPRVSRSSAlASKATGFPIAKVAAKLAVGFTLD 333
                   456777777762568***9987665468899******96555156777***********9996544 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 3.4e-10
  ATPgrasp_Ter  51 elaerlaeefgldglvnvQvrededgpkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteev 116
                   + +e+la e+++ gl+nvQ+  ++++ +L+E+NpRa+ ++  +s ++Gv l+++a++ + g+  +e 
    EHU02291.1 811 QQVEKLAFELNVRGLMNVQFAVKDNEVYLIEVNPRAARTVPfVSKATGVPLAKVAARVMAGKTLAEQ 877
                   56789999********************************8357778************99744333 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-05     0.027      26     174 ..     153     302 ..     139     308 .. 0.81
   2 !   23.4   0.1   2.4e-08   3.5e-05      29     174 ..     702     844 ..     682     856 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHH CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeak 116
                      e   +v + +g+p++++p+ +    G   + ++ee++e  e+ +    +++ l++e +   +e e+ v+ + + ++  v  i    + +d    
       EHU02291.1 153 EEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLspTNELLIDESLiGWKEYEMEVVRDKNDNCIIVCSI----ENFDAMGI 242
                      55678999***********98888899999***********98754227899998877699********9777777655554....44666666 PP

                      HC.TT-EEESS----HHHHHHHHHHHHHHHHHTT-.-SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 117 ysddkaqlevpaklekeveekiqelalkaykaldl.rGlaRvDffl.teegeivlnEvNt 174
                      +++d++++    +l++++++ +++++l + + +++ +G + v f +  ++g++++ E+N+
       EHU02291.1 243 HTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVeTGGSNVQFAVnPKNGRLIVIEMNP 302
                      67788888888889999999999999999**9998359999***9977889999999996 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 2.4e-08
                      HHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHT..T-SCEEEEE--.ESEEEEE.EEEETSSCEEEEEEEEE-SSSSS-HHHHHC CS
  Dala_Dala_lig_C  29 ekveeelgypvfVKpareGSSvGvskveseeelkeaieeafk..ydekvlvEeai.egreiev.avlgneklevsevgeivvkkgfydyeakys 118
                       +  + +gyp++V+p+       ++ v  e +lk+++++a++   d+ vl ++++ ++ e++v a+ + e++ +  + e++ + g+   +    
       EHU02291.1 702 VEKAAGIGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSvsNDAPVLLDRFLdDAVEVDVdAICDGERVLIGGIMEHIEQAGVHSGDSAC- 794
                      33456689********9888889***************9975226889*******99******667788889************998655544. PP

                      .TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 119 ddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                       +   +    +l++++++ +++ + k    l++rGl  v f ++ ++e++l EvN+
       EHU02291.1 795 -SLPAY----TLSQDIQNVMRQQVEKLAFELNVRGLMNVQFAVK-DNEVYLIEVNP 844
                      .23444....455555555555555555579***********98.9*********7 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.5e-08   9.8e-05       2     151 ..     163     303 ..     162     309 .. 0.84
   2 ?    0.2   0.0      0.32   4.8e+02      73     100 ..     590     618 ..     570     629 .. 0.52
   3 ?   -2.4   0.0       2.1   3.1e+03       9      37 ..     660     688 ..     660     705 .. 0.72
   4 !    9.4   0.0   0.00051      0.76      48     152 ..     743     846 ..     708     850 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.5e-08
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflv.EeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrl 98 
                   +P++i+Ps  ++  G  ++ n+ee+++ +++  +                ++ l+ E++i  +E+ +++  d++ + +i+  ++   a+  ++ d +
   EHU02291.1 163 GFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDL------------SPTNELLIdESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSI 248
                  69************************9955554422............223445552677888************999999888999999999***** PP

  ATP-grasp_4  99 yvtsakvieetleal.eellkevnallglknfpvHiElrvs.edgkiipiEvnpl 151
                   v +a+ ++++++++  ++  +v +++g++ + + + + v+ ++g++i+iE+np+
   EHU02291.1 249 TVAPAQTLTDKEYQImRNASLAVLREIGVETGGSNVQFAVNpKNGRLIVIEMNPR 303
                  ****9988888877747788899*****************94567*********6 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.32
  ATP-grasp_4  73 deeGepvilnilkkefasee.dvsdrlyv 100
                   e+G+++i+   + e+ s++ d+sdrly+
   EHU02291.1 590 REDGYETIMVNCNPETVSTDyDTSDRLYF 618
                  34454444444444333333146666665 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.1
  ATP-grasp_4   9 PsvgffSlGVykinneeewkaavaaieee 37 
                  P++g++   + +++++e +++av++++ +
   EHU02291.1 660 PVIGTSPDAIDRAEDRERFQQAVDRLSLK 688
                  6777777788999999*******998744 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00051
  ATP-grasp_4  48 evveeesflvEeyie.GeEfavdayfdeeGepvilnilkkefaseedvsdrlyvtsa.kvieetlealeellkevnallglknfpvHiElrvsedgki 143
                  +v +++ +l+  +++   E+ vda  d e + +i  i+++  +   +  d    ++a  ++++ ++ + + +++++ +l+++ + + + + v+++ ++
   EHU02291.1 743 SVSNDAPVLLDRFLDdAVEVDVDAICDGE-RVLIGGIMEHIEQAGVHSGDSACSLPAyTLSQDIQNVMRQQVEKLAFELNVR-GLMNVQFAVKDN-EV 837
                  45566677777777624599999999544.4556679999877666666666555541455555666788888888888876.778999999986.8* PP

  ATP-grasp_4 144 ipiEvnplr 152
                  ++iEvnp++
   EHU02291.1 838 YLIEVNPRA 846
                  *******64 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0025       3.8       6      55 ..      20      70 ..      18     157 .. 0.82
   2 !    6.4   0.0    0.0082        12      64     107 ..     619     663 ..     584     671 .. 0.74
   3 ?   -1.2   0.0       1.8   2.7e+03      53      79 ..     679     705 ..     665     711 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0025
                   ET--S-TTSHHHHHHHHHHHHT--EEEESSS-SEETTEES----T.....T CS
  CoA_binding_2  6 vGasdnpgkfgykvlryllehglpvvpVnpkeeeilgekvyaslae.dpep 55
                   +G   + +  g ++ + l+e+g++v+ Vn +  +i   ++ a+ +  +p +
     EHU02291.1 20 IGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYiEPIH 70
                   555555666789999********************9999877766433333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0082
                    -HHHHGGGHHHHHHH--SEEEE-TT---H.HHHHHHHHTT-EEE. CS
  CoA_binding_2  64 ppeatpeivkealalgakavwlqpgsede.eaaelaeeagirvvg 107
                     p +++++++ +  +++k+v++q g + + ++a+++e+ag++v+g
     EHU02291.1 619 EPVTLEDVLEIVRIEKPKGVIVQYGGQTPlKLARALEAAGVPVIG 663
                    5555566666666679********96654389999999*****97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.8
                    ..T--EEEE-S-HHHHGGGHHHHHHH- CS
  CoA_binding_2  53 pepvdlvdvftppeatpeivkealalg 79 
                    +++vd +++  p++at++++++a+++ 
     EHU02291.1 679 QQAVDRLSLKQPANATVTTLEQAVEKA 705
                    68999999999***********98874 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0034       5.1      19      52 ..     136     169 ..     128     173 .. 0.92
   2 ?    3.8   0.0     0.022        33      19      52 ..     682     715 ..     670     717 .. 0.84
   3 ?    2.0   0.0     0.082   1.2e+02     116     165 ..     968    1021 ..     958    1036 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0034
  ATP-grasp_5  19 leaygipvvetrlassaeeaveaaeeigypvvlK 52 
                  ++ +g++++++ +a++ eea+++a+ +g+p+ ++
   EHU02291.1 136 MKSIGLDTARSGIAHTMEEALAVAADVGFPCIIR 169
                  5789**************************9875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.022
  ATP-grasp_5  19 leaygipvvetrlassaeeaveaaeeigypvvlK 52 
                  ++ + ++ +    +++ e+ave a+ igyp v++
   EHU02291.1 682 VDRLSLKQPANATVTTLEQAVEKAAGIGYPLVVR 715
                  5666778888999*****************9985 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.082
  ATP-grasp_5  116 gvteDpvFGpvilfGlGGtavevlkdvavalpp....lnstlareliertkask 165 
                   g + D++ G  +++G++G+   ++++v+ + p     l++ +++++++ t   +
   EHU02291.1  968 GFELDATHGTAVVLGEAGINPRLVNKVHEGRPHiqdrLKNGEYAYIVNTTAGRQ 1021
                   567799********************9877777666644444555555444444 PP

>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.4e-05     0.066      26      62 ..     997    1041 ..     994    1045 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
                  -S-SEE-SSSSSEEEEEEEETTE.............EEEEEEEE- CS
   SmpA_OmlA   26 GsPsltdtfdpnrwdYvynfkrggka........veqqvlavyFd 62  
                  G+P+++d +++ ++ Y+ n++ g++a         +  +++v++d
  EHU02291.1  997 GRPHIQDRLKNGEYAYIVNTTAGRQAiedsklirRSALQYKVHYD 1041
                  9************************97777776666777777777 PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.77   1.2e+03      34     153 ..      34      56 ..      29     100 .. 0.60
   2 ?    9.0   0.1   0.00097       1.4     120     144 ..     575     599 ..     572     613 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.77
  Isochorismatase  34 lkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKtrfsafagtdldeiLkelgiktivlaGiatdvCV 127
                       ka r+ g++vi ++ ++                                                                            
       EHU02291.1  34 CKALREEGYRVILVNSNPA--------------------------------------------------------------------------- 52 
                      4555666666666666665........................................................................... PP

  Isochorismatase 128 eatardaldlGyevvvvsDAvaalsp 153
                                            ++  
       EHU02291.1  53 ----------------------TIMT 56 
                      ......................2222 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00097
  Isochorismatase 120 GiatdvCVeatardaldlGyevvvv 144
                      Gi+ d+C+ + a+++++ Gye+++v
       EHU02291.1 575 GIEFDYCCVHAALALREDGYETIMV 599
                      99*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 7968.66
//
Query:       EHU02292.1  [L=379]
Description: putative outer membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-06   25.8  11.7    7.6e-06   25.8  11.7    1.9  1  Autotransporter  Autotransporter beta-domain


Domain annotation for each model (and alignments):
>> Autotransporter  Autotransporter beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8  11.7   4.2e-10   7.6e-06      22     138 ..     212     320 ..     192     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.2e-10
                      EEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEEEEECEETTCCEEEEEEEEE CS
  Autotransporter  22 dadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyqgagglyldgvagygwydndtrrsvdlgglsdtakgdydg 115
                      + + gg++lG+ y ++++l+ G a  y+r+s++  ++g+s d d   +g  ++++ +g+++l+  ag+gwy+n       l++ +++ +  +  
       EHU02292.1 212 K-RQGGGSLGVNYNITPTLAWGTAWNYTRASMRNPATGNSKDYDQNIFGTALSWT-PGNWTLS--AGGGWYQN------FLTTKQRNVNNYFAD 295
                      4.7899***************************99999999999999********.9999996..57788888......5566689999999** PP

                      EEEEEEEEEEE-CEC..CGCEEEEE CS
  Autotransporter 116 nglsasleaGydfkl..sggwtleP 138
                      +++++   aGy++++   g   ++P
       EHU02292.1 296 DAWGIEYYAGYKIPVaqYGVKAVQP 320
                      *************995444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2714.19
//
Query:       EHU02293.1  [L=160]
Description: dihydrofolate reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-58  195.3   0.0      6e-58  195.1   0.0    1.0  1  DHFR_1    Dihydrofolate reductase


Domain annotation for each model (and alignments):
>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.0   3.3e-62     6e-58       1     161 []       1     158 [.       1     158 [. 0.98

  Alignments for each domain:
  == domain 1  score: 195.1 bits;  conditional E-value: 3.3e-62
                 EEEEEEEEETT-EEEBTTB-SS--HHHHHHHHHHHTTCEEEEEHHHHHCC-.S--TTCEEEEE-S-TT---TTEEEESSHHHHCCCCTTS.SEEEEEE- CS
      DHFR_1   1 kislivAvaengvIGkdnklpwhlpeDlkrFkklTtgkpvimGrkTfeslgkrpLpnrkniVltrnedlkvegvevvssleealalakeekeevfviGG 99 
                 +isli+A a +++IG +n++pw+lp+Dl++Fk+ T+ kpvimGr Tfes+g rpLp+r niV+++++  ++egv++v+sl++a+++a e+ ee++viGG
  EHU02293.1   1 MISLIAALAADRIIGMENAMPWDLPADLAWFKRNTLKKPVIMGRLTFESIG-RPLPGRLNIVVSSKPG-HAEGVTWVTSLDDAVNAAGEA-EEIMVIGG 96 
                 79************************************************9.**************99.568************988888.9******* PP

                 HHHHHHCGGG-SEEEEEEESS----SEE-----CCCEEEEEEEEE--CTTC-S-EEEEEEEE CS
      DHFR_1 100 aeiYkqalpladklylTeidaefegdtffpeideeewelvereehekdeknkyaytfvtyer 161
                 ++iY+q+l  ad+lylT+idae+egdt fp+++++ew+ + +e h++de+n+++y+f+++er
  EHU02293.1  97 GRIYEQMLARADRLYLTHIDAEVEGDTQFPDYEPDEWHSTFSEFHDADEQNSHSYCFEILER 158
                 **********************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1182.82
//
Query:       EHU02294.1  [L=285]
Description: diadenosine tetraphosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-14   54.8   0.4    1.9e-13   51.4   0.1    2.5  2  Metallophos    Calcineurin-like phosphoesterase
    1.1e-05   25.6   0.0    1.7e-05   25.0   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.053   11.8   0.1       0.22    9.8   0.0    1.7  2  FBPase_2       Firmicute fructose-1,6-bisphosphatase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   3.2e-17   1.9e-13       1      77 [.       1      77 [.       1     153 [. 0.73
   2 ?   -0.2   0.0       0.2   1.2e+03      98     132 ..     221     259 ..     200     279 .. 0.64

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 3.2e-17
                 EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS........CH CS
  Metallophos  1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe........gf 77
                 ++  +igD+H     g++d+l++ll++++ +++ d + l+GDlv rg+ + e+l++++ l++    v l+lGNH+        g 
   EHU02294.1  1 MNTYLIGDVH-----GCYDELRALLNQVNYDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGD---SVRLVLGNHDlhllavyaGI 77
                 57789*****.....*************9999******************************...9*********6666554422 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.2
                  HHCEEETSEEEEEETTE.....EEEEEEESECEEE.THHHH CS
  Metallophos  98 daevfnnlplaslgsgs.....lkvlllhGgspel.lvsld 132
                   + vf+++ + +  +++     l++ +++Gg+  l l +++
   EHU02294.1 221 HTIVFGHWASLEGKGTPegiigLDTGCCWGGN--LtLLHWE 259
                  46677777777733333677777888999992..2223333 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.9e-09   1.7e-05       1      63 [.       1      83 [.       1     145 [. 0.64

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.9e-09
  Metallophos_2  1 MklaiiSDlHsnldaleavlealke.vgvdaiihaGDl...eeeepevleellela.pvlaVrGNnD...............e 63
                   M+  +i D+H+ +d+l+a+l++++   g d+++++GDl   + +++evl+ +++l   v+ V GN+D               +
     EHU02294.1  1 MNTYLIGDVHGCYDELRALLNQVNYdPGQDTLWLTGDLvarGPGSLEVLRYVKSLGdSVRLVLGNHDlhllavyagisrnkpK 83
                   88999**************9998753567********9655566667777777777***********6666666555543321 PP

>> FBPase_2  Firmicute fructose-1,6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.053   3.2e+02      35      53 ..       4      22 ..       2      24 .. 0.88
   2 ?    9.8   0.0   3.6e-05      0.22     185     230 ..      30      76 ..      28      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.053
    FBPase_2 35 hflsDiHGeyeafshvlkn 53
                +++ D+HG y++++ +l++
  EHU02294.1  4 YLIGDVHGCYDELRALLNQ 22
                7899*********999986 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 3.6e-05
    FBPase_2 185 dklhivGDiyDRGpeadkildeLmky.hsvdiqWGNHDilWmGaaaG 230
                 d+l + GD+  RGp++  +l  + +  +sv +  GNHD+  ++ +aG
  EHU02294.1  30 DTLWLTGDLVARGPGSLEVLRYVKSLgDSVRLVLGNHDLHLLAVYAG 76 
                 7899*******************986479**********99998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2253.77
//
Query:       EHU02295.1  [L=125]
Description: protein associated with Co2+ and Mg2+ efflux [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-34  115.8   0.3    9.2e-34  115.6   0.3    1.1  1  DUF525    ApaG domain
  ------ inclusion threshold ------
      0.021   14.7   0.1          2    8.2   0.0    2.1  2  Dirigent  Dirigent-like protein
      0.074   12.9   0.0      0.093   12.5   0.0    1.2  1  DUF4354   Domain of unknown function (DUF4354)


Domain annotation for each model (and alignments):
>> DUF525  ApaG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.3   1.5e-37   9.2e-34       2      86 ..      18     102 ..      17     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 1.5e-37
                 E--BTTB--EEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEEEEEEEEE CS
      DUF525   2 eqsspeeekyvfaYsirieneseesvqLlsRhweitdadgkveevegeGvvGeqPlLepgesFeYtSgvsletpsGsmeGsytmv 86 
                 +qsspeee+yvfaY+++i+n +++svqLl R+w it+++g+++ev+geGv+GeqP+++ g++++YtSg+ letp+G+m+G+y mv
  EHU02295.1  18 SQSSPEEERYVFAYTVTIRNLGRSSVQLLGRYWLITNGNGRETEVQGEGVIGEQPHIASGSEYQYTSGAVLETPMGTMQGHYVMV 102
                 69*********************************************************************************98 PP

>> Dirigent  Dirigent-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00034         2      61     103 ..      10      52 ..       2      66 .. 0.77
   2 ?    4.7   0.0    0.0039        23      56      78 ..      89     111 ..      80     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00034
    Dirigent  61 raqGfyvaasqk..elsllmalnlvftageyngstlsvlGrndva 103
                 ++q +yva++++  e  +++a ++++   +  +s++++lGr  + 
  EHU02295.1  10 HVQSLYVASQSSpeEERYVFAYTVTIR--NLGRSSVQLLGRYWLI 52 
                 6899***99966578899999999997..6778********8654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0039
    Dirigent  56 sklvGraqGfyvaasqkelsllm 78 
                 ++++G++qG yv++++++ ++++
  EHU02295.1  89 ETPMGTMQGHYVMVDEQGDTFHV 111
                 5679**********976545554 PP

>> DUF4354  Domain of unknown function (DUF4354)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05     0.093      27      86 ..       5      64 ..       1      83 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
                SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-EEEEEE CS
     DUF4354 27 dkvivyatekdkgsvsveekaqytkafkvkvvNlsdseidLsksClvavsadkkefrldt 86
                 +v +  +   + s s++e++ y+ a+ v++ Nl++s ++L      + + +++e ++++
  EHU02295.1  5 ARVSIHVQSLYVASQSSPEEERYVFAYTVTIRNLGRSSVQLLGRYWLITNGNGRETEVQG 64
                5677777777788999************************98888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 917.82
//
Query:       EHU02296.1  [L=273]
Description: S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-79  266.3   0.0    2.4e-79  266.1   0.0    1.0  1  RrnaAD    Ribosomal RNA adenine dimethylase
  ------ inclusion threshold ------
       0.19   11.3   0.0        1.2    8.7   0.0    2.2  3  NodS      Nodulation protein S (NodS)


Domain annotation for each model (and alignments):
>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.0   2.7e-83   2.4e-79       2     264 ..       9     265 ..       8     266 .. 0.98

  Alignments for each domain:
  == domain 1  score: 266.1 bits;  conditional E-value: 2.7e-83
                 GCCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCC CS
      RrnaAD   2 nklrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsi 100
                 + +rk++gqnfl+++ +i++I++++ ++ +  ++eigpG G+lTe++ +r+++++v+Eld++La++lq+++++++kl++++qD+++f++   +    ++
  EHU02296.1   9 HYARKRFGQNFLNDQYIIDSIVSAIHPQRDEALVEIGPGLGALTEPVGERLDSLTVVELDRDLAARLQTHPFLGPKLTIYQQDAMTFDFAALA---KEK 104
                 5689***************************************************************************************77...699 PP

                 CCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S. CS
      RrnaAD 101 hqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedl. 198
                 +q+++v++nlPy+ist+l+++l++ ++  +++m+++lqke+++rl+a pgsk+++rlsv+++++++v +v++v++ +f+Pppkvdsa+v+l +  +++ 
  EHU02296.1 105 GQPLRVFGNLPYNISTPLMFHLFS-YTGSIKDMHFMLQKEMVNRLVAGPGSKAYGRLSVMAQYYCQVIPVLEVPPHAFTPPPKVDSAVVRLVPFMTPPh 202
                 ***********************6.9999********************************************************************** PP

                 --S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHHHHHHHHHHHH CS
      RrnaAD 199 pqkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkklsaeqtldifkela 264
                 p+kd++ +++++++++ ++rktl++sl+ ++  g+l+ l    i+   +++++s++q+++++++la
  EHU02296.1 203 PVKDVRILSRITTEAFGQRRKTLRNSLSHMVTAGALEDL---SIDTGLRAENVSVAQYCQLANWLA 265
                 ****************************99999999999...68*******************997 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00013       1.2      47      97 ..      41      91 ..      23     101 .. 0.78
   2 ?   -1.1   0.0      0.13   1.2e+03      53      78 ..     156     181 ..     137     184 .. 0.81
   3 ?   -2.3   0.0      0.32   2.9e+03      21      49 ..     213     239 ..     207     261 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00013
        NodS 47 alevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsd 97
                 +e+G   Galte +    ++ltvv++  +  ar ++     ++++  ++d
  EHU02296.1 41 LVEIGPGLGALTEPVGERLDSLTVVELDRDLAARLQTHPFLGPKLTIYQQD 91
                57************************9888777777655555555555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.13
        NodS  53 aaGalterlapyckrltvvdvveeai 78 
                 a G l+++   yc+ + v++v ++a 
  EHU02296.1 156 AYGRLSVMAQYYCQVIPVLEVPPHAF 181
                 568888899999*******9998886 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.32
        NodS  21 ldanefeqerlaqilrlslaqgsiadale 49 
                 + + +f q+r +  lr sl++   a ale
  EHU02296.1 213 ITTEAFGQRRKT--LRNSLSHMVTAGALE 239
                 555566666543..555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2371.24
//
Query:       EHU02297.1  [L=330]
Description: 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.1e-109  363.6   0.0   8.7e-109  363.3   0.0    1.0  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.3   0.0  4.8e-113  8.7e-109       5     282 .]      34     321 ..      31     321 .. 0.96

  Alignments for each domain:
  == domain 1  score: 363.3 bits;  conditional E-value: 4.8e-113
                 EEEEE-HHHHHHHHHHH....EEEEEBTTS....TCETEEEEEE.S.....BTTB--HHHHHHHHHHHHHHHHHHHTTSSSEEEE----HHHHHHTT-- CS
        PdxA   5 pvvvgdkkllekaakkl..elkleeieeae....easeelkvldve....veagkvsaesGaaalaslekAvelakegevdalvtaPinKeaikaaglk 93 
                  vv+++++ll ++a+ l  +l+l+ +++ae    +++++l+vl+ve    v++g++  ++G+++l++l +A++ +++ge++al+t+P++K +i++ag++
  EHU02297.1  34 LVVCASPQLLLQRAALLglPLTLRLYDSAEppapQQAGTLTVLPVElpqpVTPGTLCVDNGHYVLETLARACDGCLSGEFAALITGPVHKGVINDAGIP 132
                 6788******99886779988999998888555444499999999656678************************************************ PP

                 -SSHHHHHHHHTTSSGSEEEEEETTEEEEESS-SS-GGGHHHH--HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHHHHHH CS
        PdxA  94 fpGhtellaeltgtkkvvmmlaseeLrvalvTthipLkevakaitkerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiiepaie 192
                 f+Ghte++ae++g+++vvmmla+e+Lrval+Tth+pLk va+a+t++ l+ev+++l+++lk++f i++p+i V+GLNPhaGe+G++GrEE+++i+pa++
  EHU02297.1 133 FTGHTEFFAERAGAHRVVMMLATEQLRVALATTHLPLKAVADAVTRDCLHEVITILHQDLKEKFAIAQPHIFVCGLNPHAGEGGHMGREEIDTIIPALN 231
                 *************************************************************************************************** PP

                 HHHHCTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHHTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHHHH CS
        PdxA 193 karaegievegplpaDtlFtkaalkkydavvamYHDqgliplKllafdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAiklA 282
                 ++r++gi+++gplpaDtlF+++ l+++dav+amYHDqgl++lK  +f+++vn+tlGLp+irtSvDhGta+++ag g+ad++S+++A++lA
  EHU02297.1 232 ELRQQGIQLTGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKFQGFGRAVNITLGLPFIRTSVDHGTALELAGLGQADAGSFITALNLA 321
                 ***************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2893.75
//
Query:       EHU02298.1  [L=431]
Description: peptidyl-prolyl cis-trans isomerase (PPIase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-50  168.3   0.0    3.2e-27   95.3   0.0    3.1  3  Rotamase       PPIC-type PPIASE domain
    3.9e-49  166.0   0.0    3.6e-27   95.2   0.0    2.6  2  Rotamase_3     PPIC-type PPIASE domain
    2.2e-43  147.1   7.1    2.2e-43  147.1   7.1    2.0  2  SurA_N         SurA N-terminal domain
      3e-19   70.0   1.7    1.5e-08   35.5   0.0    3.0  3  Rotamase_2     PPIC-type PPIASE domain
    2.1e-14   53.6   4.7    4.4e-14   52.6   4.7    1.6  1  SurA_N_3       SurA N-terminal domain
    3.1e-08   33.6   5.8      4e-08   33.2   4.3    1.9  1  SurA_N_2       SurA N-terminal domain
      0.002   18.2   2.8     0.0082   16.2   2.1    2.4  1  Trigger_C      Bacterial trigger factor protein (TF) C-termin
  ------ inclusion threshold ------
        6.7    6.5   9.9       0.87    9.4   4.1    2.4  3  PhageMin_Tail  Phage-related minor tail protein


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         8   1.8e+04      16      28 ..      94     106 ..      86     115 .. 0.58
   2 !   69.5   0.0   1.6e-22   3.5e-19       2      97 .]     179     272 ..     179     272 .. 0.96
   3 !   95.3   0.0   1.4e-30   3.2e-27       1      95 [.     289     380 ..     289     382 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8
                 HHHHHHHHHHHCC CS
    Rotamase  16 aeakakaeeileq 28 
                 ++  + +++i++q
  EHU02298.1  94 QQLDQAIQNIAAQ 106
                 4444444444444 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 1.6e-22
                 EEESSCCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE- CS
    Rotamase   2 ILlkvkekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikled 97 
                 ILl ++e++++++ ++ ++ a+++ ++lk g+d F +lA  yS d++ a +gG++gw++ ++lp+ f++a++++kkG+i++p+++  Gfhi+k++d
  EHU02298.1 179 ILLPLPENPTQQQVDDQEKLAKQLVSELKGGAD-FGKLAVTYSADSQ-ALKGGNMGWSKIEELPTLFAQALATAKKGDIVGPIRSGVGFHILKVND 272
                 89999****************************.*********5555.*********************************************985 PP

  == domain 3  score: 95.3 bits;  conditional E-value: 1.4e-30
                 EEEESSCCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase   1 HILlkvkekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95 
                 HILlk+++     ++++a+ak+e+i+++++sg+ tF+++A+++Sdd++sa++gGdlgw +++ ++p+f++a+ +lkkGe+s+pv+++fG+h+i+l
  EHU02298.1 289 HILLKPSP---IMTDDQARAKLEQIAADIRSGKTTFAAAAKQFSDDPGSANQGGDLGWTSPEVFDPAFRDALLRLKKGEMSQPVHSSFGWHLIQL 380
                 ********...888899****************************************************************************98 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   4.2e-22   9.3e-19       5     114 ..     162     272 ..     159     274 .. 0.88
   2 !   95.2   0.0   1.6e-30   3.6e-27      13     115 ..     282     383 ..     275     384 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 4.2e-22
  Rotamase_3   5 klvdkksakd.svkvshIlistkgkesrseeea.kakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvv 101
                 k v+ ++ +  ++++s Il+ + +++++++ +  +++a +l+++lk gadF +lA +yS+D++ + +GG++gw + +++   F +a+ ++kkg+i +++
  EHU02298.1 162 KQVGAQNTQGtEMNISTILLPLPENPTQQQVDDqEKLAKQLVSELKGGADFGKLAVTYSADSQ-ALKGGNMGWSKIEELPTLFAQALATAKKGDIVGPI 259
                 445544444449**********99777666655499**************************9.***********99********************** PP

  Rotamase_3 102 ktdfGyHiikvtd 114
                 ++ +G+Hi kv d
  EHU02298.1 260 RSGVGFHILKVND 272
                 **********987 PP

  == domain 2  score: 95.2 bits;  conditional E-value: 1.6e-30
  Rotamase_3  13 kdsvkvshIlistkgkesrseeeakakadsllaalk.egadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHii 110
                   +v+++hIl++   ++ +++++a+ak ++++a ++  ++ Faa+Ak++SdDp+s+++GG+lgw++++ ++++F+da++ lkkge+s++v ++fG+H+i
  EHU02298.1 282 VTEVHARHILLKP--SPIMTDDQARAKLEQIAADIRsGKTTFAAAAKQFSDDPGSANQGGDLGWTSPEVFDPAFRDALLRLKKGEMSQPVHSSFGWHLI 378
                 3489*******97..789******************88899********************************************************** PP

  Rotamase_3 111 kvtdk 115
                 + +d 
  EHU02298.1 379 QLLDT 383
                 *9885 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   7.1     1e-46   2.2e-43       1     118 []      25     142 ..      25     142 .. 0.99
   2 ?   -3.6   0.0         5   1.1e+04      13      29 ..     152     168 ..     149     174 .. 0.55

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 1e-46
      SurA_N   1 ldrivavvnddvvlqseldervkevkkqlakqgkqlPpeavLerqvlerlilekiqlqeaektgirvddeelnqaiaeiAkeNkltldqlraalaedGl 99 
                 +d+++avvn++vvl+s++d+++++vk+q+++ g+qlP++++L++q+ler i++ i lq ++k+g++++d++l+qai++iA++N++tldqlr++la dG+
  EHU02298.1  25 VDKVAAVVNNGVVLESDVDSMMNTVKSQAKQAGQQLPDDKTLRHQILEREIMDAIILQLGDKAGLQISDQQLDQAIQNIAAQNHMTLDQLRSRLAYDGM 123
                 7************************************************************************************************** PP

      SurA_N 100 sydefreqiRkEiiisrlr 118
                 +y+++r qiRkE++is++r
  EHU02298.1 124 DYNTYRSQIRKEMLISEVR 142
                 *****************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5
      SurA_N  13 vlqseldervkevkkql 29 
                 +l +e+d+ +k+v +q 
  EHU02298.1 152 ILPQEVDTLAKQVGAQN 168
                 45555555555554443 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.2   9.5e+03      66      83 ..      88     105 ..      48     112 .. 0.63
   2 !   35.5   0.0   6.7e-12   1.5e-08      26     110 ..     188     275 ..     170     287 .. 0.73
   3 !   32.7   0.1   4.8e-11   1.1e-07      30     113 ..     299     388 ..     292     395 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.2
  Rotamase_2  66 gifesasnlpeelakaaf 83 
                 g+  s+++l+++++++a+
  EHU02298.1  88 GLQISDQQLDQAIQNIAA 105
                 344455666666666654 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 6.7e-12
  Rotamase_2  26 elavvkdqva.aeaalalakagaekdfaalakgnskk...aadlgifesasnlpeelakaafalkpgevsgpvetdngyyivkvtevkp 110
                  +++v+dq++ a++   ++k+ga+    a+ ++++ +    +++g+++ ++ lp  +a+a++++k+g+++gp++++ g++i+kv++++ 
  EHU02298.1 188 TQQQVDDQEKlAKQLVSELKGGADFGKLAVTYSADSQalkGGNMGWSKIEE-LPTLFAQALATAKKGDIVGPIRSGVGFHILKVNDLRG 275
                 456777776646677788888877444445554444423355555999998.9*********************************986 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 4.8e-11
  Rotamase_2  30 vkdqvaaeaalalakagae.kdfaalakgnskkaadlg......ifesasnlpeelakaafalkpgevsgpvetdngyyivkvtevkpakv 113
                 ++dq++a++++ +a   ++ ++faa+ak+ s+++++++      +++  + +++++ +a+  lk+ge s pv++++g++++++ + ++ ++
  EHU02298.1 299 TDDQARAKLEQIAADIRSGkTTFAAAAKQFSDDPGSANqggdlgWTSP-EVFDPAFRDALLRLKKGEMSQPVHSSFGWHLIQLLDTRQVDK 388
                 566666666666655555534566666666666444443344436555.66*******************************998776555 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   4.7     2e-17   4.4e-14      39     161 ..      27     141 ..       1     142 [. 0.82

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 2e-17
    SurA_N_3  39 nsvakVngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasipaFqedGkFdkerYkql 137
                 + +a Vn+  +  +++++ ++ +++q++q  g++l     d+++lr q+l++ i +a++lq  +k gl++sd++++++i++i    ++++ + ++++ +
  EHU02298.1  27 KVAAVVNNGVVLESDVDSMMNTVKSQAKQ-AGQQLP----DDKTLRHQILEREIMDAIILQLGDKAGLQISDQQLDQAIQNIA---AQNHMTLDQLRSR 117
                 349*******************9998665.555555....6679**************************************7...67899******** PP

    SurA_N_3 138 Laangltpeefeaslredlllqkl 161
                 La  g+  ++++ ++r+++l++ +
  EHU02298.1 118 LAYDGMDYNTYRSQIRKEMLISEV 141
                 ********************9876 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   4.3   1.8e-11     4e-08      39     127 ..      25     106 ..       4     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.8e-11
    SurA_N_2  39 ssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseedeaqlreqvldqlvseklleqeaeklGltvsdeelqdaiqgnpaikq 127
                  ++++a Vn+  +  ++ + +++  ++q++q  g+++     d++ lr q+l++ + ++++ q  +k+Gl++sd++l++aiq++ a  q
  EHU02298.1  25 VDKVAAVVNNGVVLESDVDSMMNTVKSQAKQA-GQQL----PDDKTLRHQILEREIMDAIILQLGDKAGLQISDQQLDQAIQNIAA--Q 106
                 56788899999999999999999999988885.7774....35699*************************************766..2 PP

>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.1   3.6e-06    0.0082      46     156 ..      38     137 ..      35     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHHHHHHHCT...TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHH CS
   Trigger_C  46 veeeidrllrqakqqleqqGldleeylelsgsseeelreelkeeAekrVklgLvleeiakeekievteeelkeeleelasqygmepeevkeflkkneql 144
                 +e  +d++++ +k+q++q G +l +            ++ l+ ++ +r  ++ ++ +++++ ++++++++l++++ ++a q  m  +++++ l+ ++  
  EHU02298.1  38 LESDVDSMMNTVKSQAKQAGQQLPD------------DKTLRHQILEREIMDAIILQLGDKAGLQISDQQLDQAIQNIAAQNHMTLDQLRSRLAYDGMD 124
                 5678899999999999888888888............667777777777788899999********************************999888776 PP

                 H.HHHHHHHHHHH CS
   Trigger_C 145 s.alkedileekv 156
                   + ++ i++e +
  EHU02298.1 125 YnTYRSQIRKEML 137
                 6677777777665 PP

>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.1   0.00039      0.87      62     156 ..      13     114 ..       8     211 .. 0.69
   2 ?   -0.8   0.0      0.53   1.2e+03      83     109 ..     226     252 ..     212     257 .. 0.81
   3 ?   -3.3   0.1       2.9   6.6e+03     116     122 ..     319     325 ..     298     350 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00039
  PhageMin_Tail  62 stalnafglsaadaeeaaDvlaaaanngatsvedlaealkevgavakaaGlsfee.............taaalallaa.agikgseAgtalknlls 143
                    ++a + f ++     +++D +aa++nng +  +d  ++++ v ++ak+aG ++ +             + a++ +l + ag++   + ++l ++++
     EHU02298.1  13 ISANTVFAAP-----QVVDKVAAVVNNGVVLESDVDSMMNTVKSQAKQAGQQLPDdktlrhqilereiMDAIILQLGDkAGLQ--ISDQQLDQAIQ 101
                    4445555555.....9**********************************999888877777777777555555554436633..44455555555 PP

  PhageMin_Tail 144 rltkeaaealkkl 156
                    ++ ++   +l++l
     EHU02298.1 102 NIAAQNHMTLDQL 114
                    5533444455555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.53
  PhageMin_Tail  83 aaaanngatsvedlaealkevgavaka 109
                     +++n g +++e+l + +++++a+ak+
     EHU02298.1 226 LKGGNMGWSKIEELPTLFAQALATAKK 252
                    567888888999999999999999887 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.9
  PhageMin_Tail 116 etaaala 122
                     t+aa+a
     EHU02298.1 319 TTFAAAA 325
                    2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3219.36
//
Query:       EHU02299.1  [L=790]
Description: exported protein required for envelope biosynthesis and integrity [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-98  330.9  34.2    1.2e-98  330.9  34.2    2.0  2  LptD      LPS transport system D
      5e-27   94.3   0.2    1.2e-26   93.1   0.2    1.7  1  OstA      OstA-like protein


Domain annotation for each model (and alignments):
>> LptD  LPS transport system D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.9  34.2  1.4e-102   1.2e-98       1     387 []     311     705 ..     311     705 .. 0.96
   2 !    2.4   0.9    0.0082        74     317     376 ..     703     759 ..     702     775 .. 0.83

  Alignments for each domain:
  == domain 1  score: 330.9 bits;  conditional E-value: 1.4e-102
                 SEEEEEEEEEEEECTTTEEEEEEEEEESSTTHHHHT--SSS-TT-SCEEEEEEEEEEETTEEEEEEEEEEEES...STTS---EEEEEEEEEEEEEEEE CS
        LptD   1 kdRglvrakhqfrlndnwrlgvdynyvSDknYfrdfdsngglvsqtqLtqsgrlsYrnrnwdfslraqdyqllsnteesndtPyqrlPqldfnyykpdl 99 
                 +dR+l++++h++ ++++wr++ dy++vSD++Yf+d+ s ++ +++ ++ q++++ Y   nwd++l+ +d+q++   ++sn++ y+++Pqld+n+y++d 
  EHU02299.1 311 SDRWLFYWRHAGVYDQHWRFNADYTKVSDQYYFNDLTSPYYSSTDGYASQKFSVGYADTNWDATLSTKDFQIF--GNTSNSNVYRAFPQLDLNWYQNDV 407
                 58***********************************************************************..778888889*************** PP

                 TT.TEEEEEEEEEEEEEESSTTS-EEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEEEE-CCHHHHCCCCH......---SEEEEEEEEEEEEEEE-E CS
        LptD 100 vegglefsfeaqavnferrdgtqptgsRlhlepeislpfstpyglltpelklrqtaYdldtnlqskerakgl......dldssvnrslpdfsvdsglpf 192
                    ++++ ++aqav+f++ +++ p+ +Rlh+ep++ lp+s+++ +l +e+k  +t+Y+++  +  +++ +         l++svnr+lp+f+vd++++f
  EHU02299.1 408 G--PFDTRIYAQAVKFTNVNSSFPETTRLHVEPTLDLPLSNSWASLDTEAKFLATHYQQKDVDYYNANFA-PtsttsgVLKDSVNRTLPQFKVDGRMVF 503
                 9..9****************************************************99977666444322.24688899******************** PP

                 EEEECCTTCCEEEEEEEEEEEEEE----GCCS.-SS--B----SGGGC-S-SCSSSS----EEEEEEEEEEEEEETTTTEEEEEEEEEEEEESS----S CS
        LptD 193 erdttlfgksytqtlePraqylyvPyrdqnnlpnyDssslsfdytnlFrdnrfsGlDriedanqltlgvtsrlidknggferlrlsvGqsfyledrrvf 291
                 +rd+++  ++ytqtlePr+qyly+Pyrdq++++ yDs++l++dyt+lFrd+ +sGlDri++anq+ +gvt+r++d +  +er+++svGq++ ++ +r+ 
  EHU02299.1 504 DRDMDW-AQGYTQTLEPRVQYLYIPYRDQSDIYPYDSTLLQTDYTGLFRDRSYSGLDRIASANQVATGVTTRIYDNDL-VERFNVSVGQIYSFTPSRTG 600
                 ******.88*****************************************************************7666.9******************* PP

                 ----TTS-SSSCEEEEEEEEEEEECTTEEEEEEEEEETTTTEEEEEEEEEEEESSTTSEEEEEEEEE-HHCCCHCTTCCC..........EEEEEEEEE CS
        LptD 292 lnsgdesglkrdksdlvaeldfrpndglslssriqydpytseferaevslsykpergksislgYryrredpeynrstnng..........ikqiglsat 380
                   ++++ ++++ +  +++++ +++++++ +++  qyd++++++  +++ l+y+++ +  ++l+Yry + ++ ++  +++           i+q+g +a+
  EHU02299.1 601 V-NQTNKDDDTGSLLWAGDTYWKISERWGVRGGLQYDTRLNNVAQGNTVLEYRRDADRMVQLSYRYSSPEYVASALNDSSlvnnpiykngISQVGTTAS 698
                 *.8999*****************************************************************9999988889****************** PP

                 EE-TTTE CS
        LptD 381 lplavnw 387
                 +p+++ w
  EHU02299.1 699 WPIHDAW 705
                 ****998 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0082
                 TTEEEEEEEEEETTTTEEEEEEEEEEEESSTTSEEEEEEEEE-HHCCCHCTTCCCEEEEE CS
        LptD 317 dglslssriqydpytseferaevslsykpergksislgYryrredpeynrstnngikqig 376
                 d +s+ + + yd+++++  ++ v+l+y++     i lgY  + + +e+n s+  +  qi 
  EHU02299.1 703 DAWSVVGAYYYDTRNNRPASQLVGLQYSSC-CYAIRLGYERKINGWENNDSKYDN--QIS 759
                 789999***********************8.999*******99999999987644..333 PP

>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.2   1.4e-30   1.2e-26       1     112 [.      52     193 ..      52     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.4e-30
        OstA   1 eIeAdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkk...........................skkierleakgtatfrqkvdlvgeqirGk 72 
                 +I++d+++ +++++ a+f+G+V+v qGn+++ Ad+v+++q +                             k++++l++k+t+++  ++++vg+q+rG+
  EHU02299.1  52 TIHSDSVKGNYPDD-AIFKGDVDVSQGNSRMLADEVQLHQRQPegqttpvrtvdalgnvhyddnqvilkgPKAWSNLNTKDTNVWDGDYQMVGRQGRGT 149
                 59************.************************************************************************************ PP

        OstA  73 AerieydskkeiivLtgnatlt.....qnsnsveGseitydikee 112
                 +++++++ ++++++++ n+t+t     +ns+sv Gsei++d++ee
  EHU02299.1 150 GDQMKLRGQNRYTIME-NGTFTsclpgSNSWSVAGSEIIQDRQEE 193
                 ***********99999.**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 5230.89
//
Query:       EHU02300.1  [L=270]
Description: DnaJ-like membrane chaperone protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-11   44.9   0.1    2.2e-11   43.9   0.1    1.5  1  TerB      Tellurite resistance protein TerB
    1.5e-09   37.9   0.1    2.8e-09   37.0   0.1    1.5  1  DnaJ      DnaJ domain
     0.0043   16.8   0.0       0.47   10.3   0.0    2.7  2  HTH_10    HTH DNA binding domain


Domain annotation for each model (and alignments):
>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1   3.7e-15   2.2e-11      14     141 ..      45     171 ..      31     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 3.7e-15
        TerB  14 agaektdaake.afalalaallaevakaDgqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrkls..peqrraliealwe 109
                 ++ ++t+   +  f   ++ ++ ++ k+ g+v+e+ +q +++l+++r++l  e+  a+ ++f e ++ +  l    r+l++++    +  r ++e+ ++
  EHU02300.1  45 FSNTQTR---QsLFFSTTFQVMGHLTKSKGRVTEADIQ-IASLFMDRMQLHGEARTAAQRAFREGKQGEYPLRTKLRELRSACFgrFDLIRMFLEIQIQ 139
                 3333333...358999*********************8.667777****************************99****99987767888889999999 PP

        TerB 110 iAlADGeldeaEdavlrrvaelLglspadfir 141
                  A+ADG+l+++E++vl  + e Lg+s+++f++
  EHU02300.1 140 AAFADGTLHPNERQVLYVIGEELGISHSQFDQ 171
                 9*****************************87 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   4.7e-13   2.8e-09       4      56 ..     207     266 ..     204     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 4.7e-13
                 HHHTSSTTG-HHHHHHHHHHHHHHHSTTTS......CCHH..HHHHHHHHHHHHHHHHTSH CS
        DnaJ   4 eiLgvskdasedeIkkaYrklalkyHPDkn......pkdp..eaeekFkeineAyevLsdp 56 
                 ++Lgv+++ ++ +Ik+aYrkl+ ++HPDk       p+     a++k + i+ Ay+   ++
  EHU02300.1 207 NVLGVKSSDDATTIKRAYRKLMSEHHPDKLvakglpPE-MmeMAKQKAQDIQSAYDLIRKE 266
                 69**************************8777667533.2458999*********988765 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   7.9e-05      0.47      21      47 ..     150     176 ..     137     178 .. 0.75
   2 !    3.6   0.0    0.0095        57      22      52 ..     198     228 ..     187     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.9e-05
      HTH_10  21 PRrvtlkeLAkelGIskstlsehLrka 47 
                   r  l  + +elGIs s + + Lr  
  EHU02300.1 150 NERQVLYVIGEELGISHSQFDQFLRMM 176
                 5556677899**************975 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0095
      HTH_10  22 RrvtlkeLAkelGIskstlsehLrkaeskli 52 
                 R  tl++  + lG++ s+    +++a +kl+
  EHU02300.1 198 RGPTLDDACNVLGVKSSDDATTIKRAYRKLM 228
                 66678888889*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2033.50
//
Query:       EHU02301.1  [L=217]
Description: ribosomal large subunit pseudouridine synthase A [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-29  102.0   0.0      4e-29  101.8   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase
  ------ inclusion threshold ------
      0.052   13.7   0.0       0.15   12.2   0.0    1.7  2  RRM_7            RNA recognition motif
       0.11   12.8   0.0       0.29   11.5   0.0    1.7  2  DinI             DinI-like family


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   6.7e-33     4e-29       1     159 [.      20     167 ..      20     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 6.7e-33
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      +++vvnKP+g+ + p+       e+++     r +++  e   vhRLD atsG++++A +++a ++l ++f+er+  K+Y+a v g+p ee+g 
       EHU02301.1  20 HIMVVNKPSGLLSVPGR-----LEAHKDSVMTRIQRDYPEAESVHRLDMATSGVIVVALTKAAERELKRQFREREPAKTYVAQVWGHPAEEKGL 108
                      689**************.....45555555555557788899**************************************************** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      ++ ++    +   ++++k+  ++gk+a+t ++v++++    + + + v l+++tGr hQ+Rvh+ 
       EHU02301.1 109 VDLPLIC--DWPNRPKQKVCFETGKSAQTEYQVVEYR----DDNSARVTLKPITGRSHQLRVHML 167
                      *******..899*************************....99999*****************96 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.59   3.5e+03      39      57 ..      82      99 ..      56     111 .. 0.60
   2 ?   12.2   0.0   2.5e-05      0.15      27      71 ..     112     156 ..     109     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.59
       RRM_7 39 kkkaaenskaakgyvflvf 57
                k+++ +++++ak+yv  v+
  EHU02301.1 82 KRQF-REREPAKTYVAQVW 99
                2222.25667777776655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.5e-05
       RRM_7  27 kvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleact 71 
                 ++++dwP+++++k +++++++a++ y  + + d++s +  l+  t
  EHU02301.1 112 PLICDWPNRPKQKVCFETGKSAQTEYQVVEYRDDNSARVTLKPIT 156
                 5789********************************998877665 PP

>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.8e-05      0.29      16      60 ..      12      56 ..       1      57 [. 0.89
   2 ?   -3.0   0.1       1.7   9.9e+03       7      18 ..      76      87 ..      73      94 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
                HHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHTHH CS
        DinI 16 iqevfPdaevrvrkasanglsveGaskedkeriseiLQetwesAD 60
                ++ ++ da++ v+   +  lsv G  +  k+ ++  +Q ++ +A+
  EHU02301.1 12 LHILYQDAHIMVVNKPSGLLSVPGRLEAHKDSVMTRIQRDYPEAE 56
                6778***********************************999987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                HHHHHHHHHHHH CS
        DinI  7 aleaELskRiqe 18
                a e EL+++ +e
  EHU02301.1 76 AAERELKRQFRE 87
                556788777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1867.46
//
Query:       EHU02302.1  [L=968]
Description: RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-154  514.6   0.2   1.9e-154  514.0   0.2    1.3  1  RapA_C           RNA polymerase recycling family C-terminal
    5.9e-26   90.4   0.0    1.3e-25   89.3   0.0    1.7  1  Tudor_RapA       RapA N-terminal Tudor like domain
    8.5e-24   83.3   0.0    1.7e-23   82.3   0.0    1.6  1  Tudor_1_RapA     RapA N-terminal Tudor like domain 1
    1.9e-20   72.9   0.0    3.3e-20   72.1   0.0    1.3  1  SNF2_N           SNF2 family N-terminal domain
    2.9e-16   59.8   0.0    3.2e-15   56.4   0.0    2.5  2  Helicase_C       Helicase conserved C-terminal domain
    3.4e-11   43.4   0.0    1.3e-10   41.6   0.0    1.9  2  ResIII           Type III restriction enzyme, res subunit
      2e-05   24.4   0.0    7.4e-05   22.6   0.0    2.0  1  DEAD             DEAD/DEAH box helicase
     0.0052   15.7   0.0      0.046   12.6   0.0    2.3  2  AAA_34           P-loop containing NTP hydrolase pore-1
     0.0075   16.1   0.0      0.023   14.6   0.0    1.8  1  Helicase_RecD    Helicase
  ------ inclusion threshold ------
       0.14   12.5   0.3        1.6    9.0   0.0    3.0  3  AAA_22           AAA domain
        3.9    7.8   4.5       0.75   10.2   0.3    2.0  3  Phage_T7_Capsid  Phage T7 capsid assembly protein


Domain annotation for each model (and alignments):
>> RapA_C  RNA polymerase recycling family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  514.0   0.2  1.2e-157  1.9e-154       1     360 []     605     965 ..     605     965 .. 0.99

  Alignments for each domain:
  == domain 1  score: 514.0 bits;  conditional E-value: 1.2e-157
                 -EEEEEEEETTSHHHHHHHHHHHHH-TTTS--TTSHHHHTTSHHHHHHHHHS-.--STTHHHHHHHHHHHHHHHHHSTTT--HHHHHHTT-SHHHHHHH CS
      RapA_C   1 diqihVPylegsaqevllrWYhegLnafeetcpagqavyeefkeeLeellake.deealeeLiaetraerealkaeleqGRDrLLElnScrpekaeelv 98 
                 diqi VP le++aq+vllrWYhegL+afe+tcp+g+++y+++++eL ++la++ ++e ++++i+ +r++++alk++leqGRDrLLElnS+++++a+ l+
  EHU02302.1 605 DIQILVPWLEKTAQAVLLRWYHEGLDAFEHTCPTGRTLYDSVHAELINYLAAPeNSEGFDDFIDACRKQHDALKSQLEQGRDRLLELNSNGGDAAQMLA 703
                 7***************************************************669******************************************** PP

                 HHHHCCC--TTHHHHCHHHHHHHTEEEE--SSSSEEEEE-STT--TT-S--S--EE-S-HHHHTTS-S---STTSTHHHHHHHHHTT--SSSSB--S-S CS
      RapA_C  99 eaiaeedndteleeflerlfdaigveqedkseksivlrpsehmlveafpglpedGltvTfdRetAlareDvqFltwehPlvrgaldlilsselGnaava 197
                 ++iae+dndtel++f+ +lfd++g++qed+s++ ivl+ps+hmlv++fpglpedG+t+Tf+R++Al+reD+qF+twehPl+r++ldlils+++G++a++
  EHU02302.1 704 NTIAEQDNDTELVNFALNLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPEDGCTITFNRDQALSREDTQFITWEHPLIRNGLDLILSGDTGSCALS 802
                 *************************************************************************************************** PP

                 -SSS-S--S-----B---B----S-GGG-GGGT--------B-SSSS-B--S-STTTSTT-------STTSSTTSSS-SHHHHTTTTTTTTSSSHHHHH CS
      RapA_C 198 llknkalpagtlllElifvveaqapkalqlerfLpptpirllldekgkdlsekvsfeslnkqlkkvkkklarklvkakrkeiekllkkaeklaeeqaee 296
                 llknkalp gtll+Eli+vve+qapk+lql+rfLpptp+rllld+kg++l+ kv+fes+n+ql++v++++ +klv+a++++++++l+ aek + ++a++
  EHU02302.1 803 LLKNKALPVGTLLVELIYVVESQAPKHLQLTRFLPPTPLRLLLDRKGTNLAGKVEFESFNRQLNAVNRHTGSKLVNAVQQDVHAILTLAEKEVVSEASA 901
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHTHHHHTHHHH--S--SSSHHHHTTTHHHHTTTTT----B----B-XXX CS
      RapA_C 297 lieeakaraeqelsaEleRLeaLkavNpnirdeeiealeeqreellealdqaqlrLdAiRlivv 360
                 +i+ a+++a+++l aEl+RLeaLkavNpnird+e++ale++re++le ld+a++rLdA+Rlivv
  EHU02302.1 902 IIDTARREASEKLGAELSRLEALKAVNPNIRDDEVDALESNREQVLESLDEATWRLDALRLIVV 965
                 **************************************************************96 PP

>> Tudor_RapA  RapA N-terminal Tudor like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   8.2e-29   1.3e-25       1      63 []      55     118 ..      55     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 8.2e-29
  Tudor_RapA   1 FnvGDeiesqegwkltVeeveeenGlliYlgkredtgee.vslpEteLdsfiqfnkPqdRLfaG 63 
                 Fn+GD+++s+egw++ V+ev ++n+l++Y+g+r dt+e+ v+l+E++Lds++ f+kPqdRLfaG
  EHU02302.1  55 FNPGDTVTSHEGWQMRVDEVRNDNDLITYIGTRLDTEETnVMLREVMLDSKLVFSKPQDRLFAG 118
                 9**************************************************************8 PP

>> Tudor_1_RapA  RapA N-terminal Tudor like domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   1.1e-26   1.7e-23       1      51 []       3      53 ..       3      53 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1.1e-26
  Tudor_1_RapA  1 FavGQRWiSetEseLGLGivvevdgrtVtilFpaageeRtYatanApLtRv 51
                  F++GQRWiS+tEseLGLG+vv++d+r++t+lFpa+ge+R Ya++++p+tRv
    EHU02302.1  3 FTLGQRWISDTESELGLGTVVAIDTRMITLLFPATGENRLYARSDSPVTRV 53
                  99************************************************8 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0     2e-23   3.3e-20      59     295 ..     174     443 ..     165     467 .. 0.88

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2e-23
                 EE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  59 iLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittY 157
                 +LaDe GLGKT+++  +i +q  +   ++           +LivvP +l +qW  e+ r   + +lr    ++++    + ++ +++ + + + +i ++
  EHU02302.1 174 LLADEVGLGKTIEAGMIIQQQLLAGRAER-----------VLIVVPETLQHQWLVEMLR---RFNLRFALFDDDR--YAEAQHDSDNAFDTEQLIICSL 256
                 8*****************97766444433...........9************999866...4556666677765..455567899************* PP

                 HHHHHHT......TTS-S-S-SEEEES-GGGT--T...TSHHHHHHHH--..-S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HH..HHHHHTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
      SNF2_N 158 dvlsreaelqkkrsvlkqvewkrvvlDEghtlkns...tskaaeavskLs..tsnrwiltGTPiqnsledlygLlkfLreepfgekq..tfdkllqrpi 249
                 d ++r++    + ++l + +w+ +v+DE+h l  s    s+ ++a++kL+      ++lt+TP q ++e  ++ l +L ++ f ++   + +++  rpi
  EHU02302.1 257 DFVRRNK---LRLDKLADADWDLLVVDEAHHLAWSegePSREYQAIEKLAenIPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFAafVEEQQHFRPI 352
                 ****999...89********************9996666**********9545679*****************************77467788888999 PP

                 H........................................HHHHHHHHHHHTT-S......TTEE---GGGT--S---EEEEEEEEE--HH CS
                 x........................................xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 250 e........................................aqaekgrsrLlqllq......rlmlrrakkdveknlPpkteeiiflklskv 295
                 +                                        + +++ r++L+++l       r++ r + + v k +P+++ ++i+l+l ++
  EHU02302.1 353 AdavtslladnpisqdemnminelvgeqdiepllqvansdrEGKQEARQELISMLMdrhgtsRVLFRNTRNGV-KGFPKRELHTIRLPLPAQ 443
                 9**************************************99999999******9997777777**********.*************99765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.86   1.4e+03      12      72 ..     196     255 ..     189     261 .. 0.73
   2 !   56.4   0.0     2e-18   3.2e-15       8     111 .]     496     601 ..     490     601 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.86
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLia 72 
                 l  + +++li+v+ + + +  v++l +++++++a ++ +  ++ + ++ ++f + e+ ++ +
  EHU02302.1 196 LAGRAERVLIVVPETLQHQWlVEML-RRFNLRFALFDDDRYAEAQHDSDNAF-DTEQLIICS 255
                 5677889999999998775545555.8899******9999999999999999.434445444 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 2e-18
                 HHHHHTTTTSEEEEEESSHH.HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   8 ellkleeeggkilifvntid.rlek.vklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                  +l ++++++k+l+++ +    l +  ++l+e++gi++av+h  l+  er+++ + f   ++  +vL+++ ++++G +++ ++ +++fdlp+n++ + q
  EHU02302.1 496 GYL-TSNRKEKVLVICAQAAtAL-QlEQVLREREGIRAAVFHEGLSIIERDRAAAWFAseENGAQVLLCSEIGSEGRNFQFASRLVMFDLPFNPDLLEQ 592
                 455.6789999999999999533.3369999**************************96445567********************************** PP

                 HHTTSSSTT CS
  Helicase_C 103 riGRtgRag 111
                 riGR  R+g
  EHU02302.1 593 RIGRLDRIG 601
                 *****9986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   7.7e-14   1.3e-10      21     170 ..     158     317 ..     117     318 .. 0.71
   2 ?   -2.0   0.0       1.8     3e+03      47      75 ..     497     524 ..     493     563 .. 0.67

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 7.7e-14
                 ...........TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SE CS
      ResIII  21 s.........krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkki 106
                 +         ++  r+l++ + G GKT+ a  +i++ l +g+ e++l++vp+ +l  q+l e+ + ++  ++        + + d+++a     ++ ++
  EHU02302.1 158 QlhiahdvgrRHAPRVLLADEVGLGKTIEAGMIIQQQLLAGRAERVLIVVPE-TLQHQWLVEMLRRFNLRFALfdddRYAEAQHDSDNA----FDTEQL 251
                 04444444435566999**********************************7.588888855544444443322222333344444444....678899 PP

                 EEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---.SEEEEEESS-S CS
      ResIII 107 lvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.....swreilekfke.avllglTATpe 170
                 ++ + + + +++       ++l +   d++++DEaH+l+ ++     ++++i +  ++   +l lTATpe
  EHU02302.1 252 IICSLDFVRRNK----LRLDKLADADWDLLVVDEAHHLAWSEgepsrEYQAIEKLAENiPGVLLLTATPE 317
                 999988888888....445556667789***********98456667999985555444678999****8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                 HH-S.....-EEEEESSHHHHHHHHHHGG CS
      ResIII  47 rllkkgkeekflflvprkslleqtleefk 75 
                 +l++ +++ek+l+++ + +   q+++ ++
  EHU02302.1 497 YLTS-NRKEKVLVICAQAATALQLEQVLR 524
                 4444.455799999999887777765544 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.6e-08   7.4e-05      16     170 ..     172     317 ..     155     321 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.6e-08
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT...CSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng...vdivvgtpgrlddl 111
                  vl+a e+G GKT  + + + q+++     ++ ++liv+P   L +q l ++ ++++   lr  l+   +++ + + + dn     ++++      +d+
  EHU02302.1 172 RVLLADEVGLGKTIEAGMIIQQQLLA---GRAERVLIVVPE-TLQHQWLVEMLRRFN---LRFALFDD-DRYAEAQHDSDNAfdtEQLIICS----LDF 258
                 69999*******************85...7777*******7.588888888877777...66665533.33322222222332212222222....234 PP

                 HHCTSSHCTTE.....EEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 lstgklnlsqv.....rflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 ++++kl+l+++      +lV+DEa+ l  ++ ++  +   +++++  ++ +    v++l+AT++
  EHU02302.1 259 VRRNKLRLDKLadadwDLLVVDEAHHLAWSEGEPSRE--YQAIEKLAENIP---GVLLLTATPE 317
                 455555555554444499********99873333322..244433344444...399****986 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.8e-05     0.046      64     252 ..     174     345 ..     157     353 .. 0.65
   2 ?   -2.3   0.0         1   1.6e+03     212     238 ..     557     582 ..     550     601 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
      AAA_34  64 llGDgaGvGkgrqiagiilenllqgrkkavwvsvsedLkeDaerDlkdigas..eievvalnklkegkkikeseelkeGvlFvtYstliseskk..kkk 158
                 ll D+ G+Gk+ + + ii ++ll+gr   v + v e+L++    ++  ++    +  ++  +++ e+++        +   F t +  i + +   ++k
  EHU02302.1 174 LLADEVGLGKTIEAGMIIQQQLLAGRAERVLIVVPETLQHQWLVEM--LRRFnlRFALFDDDRYAEAQHD-------SDNAFDTEQLIICSLDFvrRNK 263
                 799***********************************97554333..3333012334444444444333.......2233444444443333211224 PP

      AAA_34 159 srleqlveWlgedfdGvivfDEchkaknlakseekkatktgkavlelqkklpkArvvYvsaTgasepknlaYmsRLglwgegtafkdfedflea 252
                  rl++l +   +d+d ++v DE+h+++ ++    +++++  +a+ +l +++p   v+ + aT    +   ++  RL l      f+df +f+e+
  EHU02302.1 264 LRLDKLAD---ADWD-LLVVDEAHHLAWSE----GEPSREYQAIEKLAENIPG--VLLLTATPEQ-LGMESHFARLRLLD-PDRFHDFAAFVEE 345
                 68888754...7777.88999999987765....4678888888888888885..6666666533.22224556777775.3456777776665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
      AAA_34 212 ArvvYvsaTgasepknlaYmsRLglwg 238
                 A+v+ +s  g se +n+ ++sRL ++ 
  EHU02302.1 557 AQVLLCSEIG-SEGRNFQFASRLVMFD 582
                 8899999876.99**********9985 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.023       7     101 ..     180     284 ..     173     288 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
  Helicase_RecD   7 GRGKSaalGlalaaliaegk.snilvtapskenvktlfeflakglealglke...eekkkkaekaelrvr...kqrieyiapdellklkeqa...d 92 
                    G GK+  +G+++++ + +g+  ++l++ p+  + + l+e+l++   +  l +     ++++ +++++ ++    +++++++ ++l   k +    d
     EHU02302.1 180 GLGKTIEAGMIIQQQLLAGRaERVLIVVPETLQHQWLVEMLRRFNLRFALFDddrYAEAQHDSDNAFDTEqliICSLDFVRRNKLRLDKLADadwD 275
                    99**********9988887779*************999999664333333334552233333333334435678999***9999987654334569 PP

  Helicase_RecD  93 llvvDEAAa 101
                    llvvDEA  
     EHU02302.1 276 LLVVDEAHH 284
                    9******65 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.2   6.9e+03      93     100 ..     172     179 ..     153     207 .. 0.68
   2 ?    9.0   0.0   0.00097       1.6      93     132 ..     275     317 ..     254     321 .. 0.75
   3 ?   -1.7   0.0       1.9   3.2e+03      64      91 ..     861     889 ..     849     927 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.2
      AAA_22  93 elliiDEa 100
                 ++l+ DE+
  EHU02302.1 172 RVLLADEV 179
                 55555554 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00097
      AAA_22  93 elliiDEaqhlr.s....eealeeLrsllnlsrkgvqliLvGtpe 132
                  ll++DEa+hl  s     + ++ + +l++    +  l+L  tpe
  EHU02302.1 275 DLLVVDEAHHLAwSegepSREYQAIEKLAE--NIPGVLLLTATPE 317
                 79*********8834556777777777788..8888888888874 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.9
      AAA_22  64 lglelka.erlsseellealeqalrarav 91 
                 ++++l+a +r++ + l++a++q ++a  +
  EHU02302.1 861 FNRQLNAvNRHTGSKLVNAVQQDVHAILT 889
                 44444446678999999999999998776 PP

>> Phage_T7_Capsid  Phage T7 capsid assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       8.2   1.3e+04      55      77 ..     690     712 ..     687     719 .. 0.83
   2 ?   10.2   0.3   0.00046      0.75      45     104 ..     854     912 ..     850     923 .. 0.91
   3 ?   -3.7   0.0       9.1   1.5e+04      54      75 ..     937     958 ..     936     960 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8.2
  Phage_T7_Capsid  55 hleaenkdaaesleaalerrDla 77 
                       l+++  daa+ l + + ++D  
       EHU02302.1 690 ELNSNGGDAAQMLANTIAEQDND 712
                      578889999999*9999999965 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00046
  Phage_T7_Capsid  45 GrekfqailshleaenkdaaesleaalerrDlatvkaiinlageslakkfGkkpkrsvtk 104
                      G+ +f+    +l+a n++++  l +a+ ++D++++ ++ +   +s a+++  +++r+ ++
       EHU02302.1 854 GKVEFESFNRQLNAVNRHTGSKLVNAV-QQDVHAILTLAEKEVVSEASAIIDTARREASE 912
                      7889**********************8.58*******************99999998776 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.1
  Phage_T7_Capsid  54 shleaenkdaaesleaalerrD 75 
                      ++le++ +++ esl++a  r D
       EHU02302.1 937 DALESNREQVLESLDEATWRLD 958
                      5799999999****99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.41
# Mc/sec: 7016.33
//
Query:       EHU02303.1  [L=786]
Description: DNA polymerase II [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-42  146.2   0.0    3.5e-33  115.0   0.0    2.2  2  DNA_pol_B       DNA polymerase family B
    1.4e-11   44.1   0.0    4.2e-05   22.8   0.0    2.5  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    4.3e-05   22.6   0.0     0.0041   16.0   0.0    2.1  2  DNA_pol_B_2     DNA polymerase type B, organellar and viral
     0.0036   17.6   0.6        1.4    9.2   0.0    4.0  4  GGDEF_2         GGDEF-like domain
  ------ inclusion threshold ------
      0.061   13.9   0.2       0.14   12.8   0.2    1.5  1  P63C            P63C domain
      0.084   12.9   0.1        8.3    6.4   0.0    2.8  2  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.5e-10   4.5e-07      22      76 ..     382     432 ..     347     452 .. 0.82
   2 !  115.0   0.0   1.2e-36   3.5e-33     157     415 ..     492     742 ..     469     767 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.5e-10
                 HHHHTTBE-B-----.--SS.-S----BE----EEESS-EEEEEETTHHHHHHHH CS
   DNA_pol_B  22 lakeegfilpdrtekkgkeeegYqGatVlePkkglydkpvlvlDFaSLYPsiiqa 76 
                  +++ gf++p+  + + +   + +G+ V++ + glyd+ vlvlD++SLYPsii  
  EHU02303.1 382 RMHRVGFVAPNLGDVAPE---ASPGGYVMDSRPGLYDS-VLVLDYKSLYPSIIRT 432
                 567778888854444222...479************85.9************976 PP

  == domain 2  score: 115.0 bits;  conditional E-value: 1.2e-36
                 HHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-S-.SSHHHHHHHHHHHHH CS
   DNA_pol_B 157 lalKvtaNsvYGftGvansrlpclalAasvTtiGRemLektkelvekkaellskllalpeeaeeeklkviYGDTDSvfielkv.kdveellkigkelae 254
                 +alK+++N++YG++G +  r++   lA+s+T  G  ++++t+el+e++                 +++viYGDTDS f+ lk  +d +e+ ++g++la+
  EHU02303.1 492 QALKIIMNAFYGVLGTSACRFFDPRLASSITLRGHAIMQQTRELIEAE-----------------GYDVIYGDTDSTFVWLKSaRDEAEAEATGRALAA 573
                 79********************************************88.................9***************998999999999999999 PP

                 HHH.........T.TSTTT--EEEEEEEEEEEEE........ETTEEEEEEEEESSTTSEEEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HH CS
   DNA_pol_B 255 evs.........eklfkkplklefekvykkllLi........sKKkYaglkvektskanklliKGvdlvRrdncklvkevikkvlelllkdeteersle 336
                 +v+         +  +++ l+le+e+ +++ l+         sKK+Yagl+ e   +++++++KG++ vR d+++l+++  +++  ++++     ++ e
  EHU02303.1 574 KVNdwwrehlqqQYGLTSALELEYENHFCRFLMPtirgaeqgSKKRYAGLIRE--GDSERMVFKGLESVRTDWTPLAQQFQQELYSRIFHR----QPWE 666
                 9983333222112235788**************6333344447********99..77778*******************************....4444 PP

                 HHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEEESS.CCCSSGCCSHHHHHHHHHHHHCSS-.....--TTCEEEEEEBETSS.. CS
   DNA_pol_B 337 eglealksilkdvleeleenkvplekfvlskelskepenyksknlphlevakrlkkrneea.....pevgdrisYvivekkkev 415
                 e       ++ +  ++l +++ + +++++ k+l+++ ++y+ +  ph+ +a+   ++n++      ++ g ri Yvi     e+
  EHU02303.1 667 E-------YVRTTVTQLLAGELD-DQLIYKKRLRRPLKEYERNVPPHVRAARLADEHNRKLgrplqYQTGGRIRYVIATGGPEP 742
                 4.......444444777888877.789*********************9987666666655888889**********9987654 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.7e-07   0.00082      62     173 ..      73     166 ..      50     170 .. 0.82
   2 !   22.8   0.0   1.4e-08   4.2e-05     240     288 ..     205     251 ..     191     298 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-07
                     CTSSCCHHCEEEEEESSTCHHHHHHHHHHHCCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEETTTSCEETTTCC CS
  DNA_pol_B_exo1  62 ygyekkpvpylkvsvsnpnelkkirkelspleeivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdvddliakpkese 156
                      ++ ++p  ++ ++ ++ ++l+ i k+l   e+++  ye+d+ + er+l+ + i+ + w++ +          ++ d  ++    +l ++p +  
      EHU02303.1  73 TDFRRRP--VFGLYCRQHRQLQWIEKKL--RENGIPLYESDIRPPERYLMERFITAPVWFDGD----------AQGDALVNA---RLKPHP-DYR 149
                     5666664..9999999************..79***************************9999..........555555555...444433.334 PP

                     S-EEEEEEEEEETEETT CS
  DNA_pol_B_exo1 157 pplrvlsFDIeckskkg 173
                     ppl+  s DIe++++++
      EHU02303.1 150 PPLKWVSLDIETTQHGE 166
                     9***********98875 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.4e-08
                     HHHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG.SCC CS
  DNA_pol_B_exo1 240 elLqaflefikqydPdvitgYNidnFDlpYilnRakelykvklsklgrl 288
                     +lL+a    + ++dPdv++g+N+ +FDl+++++ a+ + +  l +lgr 
      EHU02303.1 205 QLLEALNRWFADHDPDVVIGWNVVQFDLRVLQKHADRYGI-PL-RLGRQ 251
                     68888999999************************95555.33.44553 PP

>> DNA_pol_B_2  DNA polymerase type B, organellar and viral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.1    0.0055        16     215     245 ..     403     432 ..     399     439 .. 0.88
   2 !   16.0   0.0   1.4e-06    0.0041     340     387 ..     460     507 ..     453     512 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0055
  DNA_pol_B_2 215 GGrcypsvlgiyeeniyvyDvnSlYPsamth 245
                  GG++ +s  g y + + v D +SlYPs+ + 
   EHU02303.1 403 GGYVMDSRPGLY-DSVLVLDYKSLYPSIIRT 432
                  999999999999.9*************9765 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.4e-06
  DNA_pol_B_2 340 vFeekktlfkeYvdklysaKekakkeknevkrsiaKlllNsLYGrFat 387
                   F++ + +    v+++ + +e+akk++n++ ++  K+++N+ YG  +t
   EHU02303.1 460 RFSRETHCLPAIVEQIWQGRETAKKQGNKPLSQALKIIMNAFYGVLGT 507
                  6888888888899*******************************8877 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.91   2.7e+03      38      72 ..      11      45 ..       4      67 .. 0.64
   2 ?    2.1   0.0     0.075   2.3e+02      36      55 ..     192     224 ..     160     235 .. 0.60
   3 ?    0.6   0.0      0.22   6.4e+02       8      32 ..     235     259 ..     229     287 .. 0.83
   4 !    9.2   0.0   0.00048       1.4      34      85 ..     525     576 ..     508     589 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.91
     GGDEF_2 38 lraleealralgpdalvavrgdrlvlllpaedeed 72
                 r++++ ++ +  +  +a++++   ++lp++++ +
  EHU02303.1 11 SRHWRDTAQGTEITLWLATDDGAQRVVLPVQESVT 45
                57777777878888888888888888888777543 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.075
     GGDEF_2  36 r.............llraleealralgpdalva 55 
                 +             ll+al +++++++pd++++
  EHU02303.1 192 AldfeliyletrpqLLEALNRWFADHDPDVVIG 224
                 233333444444447777777777777776665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.22
     GGDEF_2   8 llerarrlgldldgpyvvvvielee 32 
                 l+ +a r+g++l+  ++ +v+e +e
  EHU02303.1 235 LQKHADRYGIPLRLGRQQAVLEWRE 259
                 6789***********9999999865 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00048
     GGDEF_2  34 aerllraleealralgpdalvavrgdrlvlllpaedeedaeallerlarrlg 85 
                 ++++ ++ +e+++a g d++++  ++++v+l +a+de++aea  ++la++++
  EHU02303.1 525 GHAIMQQTRELIEAEGYDVIYGDTDSTFVWLKSARDEAEAEATGRALAAKVN 576
                 4579999******************************999966666665544 PP

>> P63C  P63C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   4.6e-05      0.14       6      71 ..     640     705 ..     637     722 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-05
        P63C   6 lseellkwekrFpdefykelyrlrgwkykpsakkkpkvvgkltnelvYerLakdvleeLrklnpkk 71 
                 ++ +  + +++F++e+y++++  + w+   +++  + ++g+l ++l+Y++   + l+e +++ p++
  EHU02303.1 640 VRTDWTPLAQQFQQELYSRIFHRQPWEEYVRTTVTQLLAGELDDQLIYKKRLRRPLKEYERNVPPH 705
                 566778889*****************944578888999**********984444445555555544 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0028       8.3      57      99 ..     203     246 ..     190     249 .. 0.82
   2 ?    3.1   0.0     0.028        84      58     131 ..     526     602 ..     489     606 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0028
  Glyco_transf_4  57 slaflrrlrrllkrekpDvvHahspaalgaallalrr.rlgipl 99 
                     +++ l +l r++  ++pDvv  ++ + + + +l   + r+gipl
      EHU02303.1 203 RPQLLEALNRWFADHDPDVVIGWNVVQFDLRVLQKHAdRYGIPL 246
                     5778899****************999986555554446999997 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.028
  Glyco_transf_4  58 laflrrlrrllkrekpDvvHahspaalgaallalrr......rlgiplVltvHglyekrllkarlkplsrllralerrll 131
                      a +++ r+l+++e++Dv+   +  +++  +l+++r      ++g  l + v +++ + +l++  ++ s+l+ ++e++++
      EHU02303.1 526 HAIMQQTRELIEAEGYDVIYGDTDSTFV--WLKSARdeaeaeATGRALAAKVNDWW-REHLQQQYGLTSALELEYENHFC 602
                     455678899**********877755553..33333335557777777777777777.55666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5661.26
//
Query:       EHU02304.1  [L=254]
Description: conserved inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-16   60.6   1.2    1.9e-16   60.6   1.2    2.4  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
        3.6    7.8   9.5        8.4    6.6   8.7    2.0  1  DUF4381      Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   1.2   2.1e-20   1.9e-16       1     118 [.      36     159 ..      36     161 .. 0.87
   2 ?    3.1   1.8     0.014   1.2e+02       9      63 ..     161     224 ..     155     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.1e-20
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka....lerlverygflallllrllpivPrdlvnyva 89 
                  lP++v+++ +G+l+     gl+ ++ + ++g+llG++++y +g +++     +++ + +++k      e+ + ++  +++l++r++    r+l++++a
   EHU02304.1  36 LPGTVMMASLGALVgsgqiGLYPAWAAGFVGCLLGDWVSYGIGWKFQG--PLHRWKYLQKYKGlldkTEHALYQHSMFTILVGRFVGPT-RPLIPLAA 130
                  79************999999999********************99983..33334444444444666999999999***********88.******** PP

  SNARE_assoc  90 GltrvsfkrFflatfiGsipwalvyaylG 118
                  G++++++++F+  ++iG+i+w  +y++ G
   EHU02304.1 131 GMLELPVRKFLPPNLIGCILWPPLYLLPG 159
                  *********************99998877 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.014
  SNARE_assoc   9 aaGvlf.........glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlv 63 
                  +aGv++         ++++ +++++l + lG++l++   r    ++   ++l ++r+++l+ l 
   EHU02304.1 161 LAGVAIdvpkeaqggHFIWLLVAVALVVWLGCWLCWRWWRGEKTRDWATAYLPPERLRWLAPLG 224
                  5666666666666557788999999999999999998877666677777788888888755444 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.7   0.00094       8.4      22      55 ..     179     212 ..     176     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00094
     DUF4381  22 wlllaalllllllvlalwllrrrkrnrreAlreL 55 
                 wll+a++l+++l +++ w+++r  + r  A + L
  EHU02304.1 179 WLLVAVALVVWLGCWLCWRWWRGEKTRDWATAYL 212
                 7888688889***********9999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2043.31
//
Query:       EHU02305.1  [L=233]
Description: ATP-binding component of an ABC superfamily thiamin transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-34  119.0   0.0    3.3e-34  118.3   0.0    1.3  1  ABC_tran        ABC transporter
    4.1e-11   43.2   0.2    1.3e-06   28.4   0.1    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    8.5e-05   22.1   0.0     0.0012   18.3   0.0    2.0  1  SMC_N           RecF/RecN/SMC N terminal domain
     0.0003   21.2   0.4     0.0006   20.2   0.4    1.6  1  AAA_16          AAA ATPase domain
    0.00069   19.6   0.1     0.0014   18.6   0.1    1.4  1  RsgA_GTPase     RsgA GTPase
     0.0012   19.0   0.1      0.033   14.4   0.1    2.3  1  SbcCD_C         Putative exonuclease SbcCD, C subunit
     0.0023   17.6   0.0     0.0043   16.7   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
     0.0026   18.0   0.1      0.017   15.4   0.1    2.1  1  AAA_22          AAA domain
     0.0058   16.6   1.3       0.87    9.5   0.1    3.0  3  NACHT           NACHT domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.025   14.6   0.0    1.6  1  MMR_HSR1        50S ribosome-binding GTPase
       0.02   15.4   0.0      0.029   14.9   0.0    1.2  1  AAA_23          AAA domain
      0.033   13.7   0.0       0.47   10.0   0.0    2.2  2  AAA_25          AAA domain
      0.034   13.5   0.2       0.14   11.6   0.0    1.8  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.043   12.8   0.0      0.073   12.0   0.0    1.3  1  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
      0.048   13.4   0.0       0.21   11.3   0.0    1.8  2  AAA_24          AAA domain
      0.067   12.9   0.5       0.55    9.9   0.0    2.3  3  AAA_30          AAA domain
        0.1   12.9   0.1       0.74   10.0   0.0    2.1  2  AAA_28          AAA domain
        0.1   12.6   0.3       0.27   11.3   0.3    1.6  2  Dynamin_N       Dynamin family
       0.13   12.4   0.0       0.21   11.7   0.0    1.3  1  DUF87           Helicase HerA, central domain
       0.18   12.4   0.0       0.83   10.2   0.0    2.1  2  AAA_18          AAA domain
       0.36   10.5   1.0       0.78    9.4   0.1    2.0  3  Cytidylate_kin  Cytidylate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   3.9e-37   3.3e-34       4     136 ..      18     157 ..      16     158 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 3.9e-37
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiekal 89 
                  sl+  +ge++ai+G++GaGKStLl+l+ag l   +G++ +dg d ++     +++ +++l+qe++lfp+l+v++n             ++++++++++
  EHU02305.1  18 FSLHAGRGERLAILGPSGAGKSTLLNLIAGFLPVSQGSLIMDGVDHTH--SVPAQRPVSMLFQENNLFPHLSVEQNlglglhpglrltaDQRQQVATIA 114
                 5778889************************************99999..999999*******************************9888999***** PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++gl+e+  +       +LSgGq+qrvalar+ll+++++lllDEp+
  EHU02305.1 115 QQVGLSEMLSRLP----GQLSGGQRQRVALARCLLRERPVLLLDEPF 157
                 *******999998....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.8e-05     0.067       3      26 ..      29      53 ..      28      91 .. 0.79
   2 !   28.4   0.1   1.6e-09   1.3e-06     235     299 ..     128     190 ..     123     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.8e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarl.d 26
                ++ Gp g+GKS+LL ++ ++  + +
  EHU02305.1 29 AILGPSGAGKSTLLNLIAGFLPVsQ 53
                699**************99865551 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 1.6e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSp 299
                  +lS G+++  al+  llr +   ++ll+DEp + L+P+l  + l l+   ++++ + +++++HS 
  EHU02305.1 128 GQLSGGQRQRVALARCLLRER---PVLLLDEPFSALDPALRGEMLNLVrTVCEAREITLLMVSHSL 190
                 689999999989999999999...************************98888888*********6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06    0.0012      28     198 ..      29     189 ..      23     205 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEE....TTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseyki....ngkevtk 120
                 ai+Gp G+GKs ll+ i   L  ++          +li     ++++   +  v+++f++++       +++s+++++  + +   ++     ++ +t 
  EHU02305.1  29 AILGPSGAGKSTLLNLIAGFLPVSQG---------SLIMDgvDHTHSVPAQRPVSMLFQENNLF-----PHLSVEQNLGLGLHPGLRLtadqRQQVATI 113
                 79999999999999999666665444.........33333334457777778899999888876.....444444444444443333310003333444 PP

                 HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
       SMC_N 121 kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislr 198
                 ++   l e+    + +LSgG+++ vala        + +p+ llDe  +aLD + + ++ +l+++  +     ++++s++
  EHU02305.1 114 AQQVGLSEMLSRLPGQLSGGQRQRVALARC----LLRERPVLLLDEPFSALDPALRGEMLNLVRTVCEAreITLLMVSHS 189
                 4444444444555669*******9999876....58999*******************9999996543211455555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.4   7.1e-07    0.0006      19     142 ..      20     154 ..      14     206 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.1e-07
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde............aesaeleawrekleea 104
                 +++gr+e + + G+sG GKs+l++ ++  l  + g ++    d+   ++p +  +  ++ ++ l+  l  e            +      a++++  ++
  EHU02305.1  20 LHAGRGERLAILGPSGAGKSTLLNLIAGFLPVSQGSLIMDGVDHT-HSVPAQRpVSMLFQENNLFPHLSVEqnlglglhpglrL-----TADQRQQVAT 112
                 578999********************9888877544444444443.35555444677777778888887776666666432221.....2222222222 PP

      AAA_16 105 la.......avpelagaea..srllellkrllallsrderplvlvlD 142
                 +a         + l+g+++  +r + +l+r+l  l+  er  vl+lD
  EHU02305.1 113 IAqqvglseMLSRLPGQLSggQRQRVALARCL--LR--ER-PVLLLD 154
                 22233334433333333335555555555555..22..44.344444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.6e-06    0.0014     100     121 ..      26      47 ..      18      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.6e-06
                  SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallp 121
                  +  +++G+SG+GKStL+n +++
   EHU02305.1  26 ERLAILGPSGAGKSTLLNLIAG 47 
                  56789*************9987 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.8e-05     0.033      24      89 ..     121     173 ..     101     174 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-05
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + lsr  g+lSGG++q    +ala   + l++++        +++LDE Fs lD+  + ++l+l++
  EHU02305.1 121 EMLSRLPGQLSGGQRQR---VALA---RCLLRER-------PVLLLDEPFSALDPALRGEMLNLVR 173
                 45677777788888843...2333...3345553.......4799******************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.1e-06    0.0043      23      39 ..      25      42 ..      10      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.1e-06
      AAA_29 23 g.atlltGpsGsGKSTll 39
                g    + GpsG+GKSTll
  EHU02305.1 25 GeRLAILGPSGAGKSTLL 42
                34789************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     2e-05     0.017       8     121 ..      28     179 ..      23     193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsst...sskdl.lrellralglelka................erlsseelleal 82 
                 l++ G+sG+GK+tll+ ++  l+  +         + + v  + p+s+   +   +    + ++lgl+l+                 +   ++e+l++l
  EHU02305.1  28 LAILGPSGAGKSTLLNLIAGFLPVSQGSLImdgvDHTHSVPAQRPVSMlfqENNLFpHLSVEQNLGLGLHPglrltadqrqqvatiaQQVGLSEMLSRL 126
                 6899**************999976543333777766666666666666664444444555566666666667777777777777777555555555555 PP

      AAA_22  83 eqalrarav............ielliiDEaqh.lr...seealeeLrsllnlsrk 121
                   +l+  ++            +++l++DE    l+   + e+l+ +r+  +    
  EHU02305.1 127 PGQLSGGQRqrvalarcllreRPVLLLDEPFSaLDpalRGEMLNLVRTVCE--AR 179
                 444444444555555566666777777775555665555777777777666..55 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1     0.001      0.87       3      21 ..      28      46 ..      26      54 .. 0.88
   2 ?    3.9   0.0     0.054        46      85     109 ..      56      77 ..      48      92 .. 0.77
   3 ?    0.8   0.2      0.46     4e+02      52      92 ..     117     155 ..     100     206 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                +++ G++G GK+tLl  +a
  EHU02305.1 28 LAILGPSGAGKSTLLNLIA 46
                789************9886 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.054
                 EEEE-STT-SS-TCH.........H CS
       NACHT  85 lilDglDelvtdlgqkekqpvrtlL 109
                 li+Dg+D +++ + q   +pv  l+
  EHU02305.1  56 LIMDGVDHTHSVPAQ---RPVSMLF 77 
                 9**********9999...4444444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.46
                 .-HCHHHCCCCTS--SSS-C.CHHHHCCSCCCEEEEEE-STT CS
       NACHT  52 rsladllfsqlpepaapvse.vwavllelperlLlilDglDe 92 
                  +l ++l +   ++++ +++ v   ++ l+er +l+lD   e
  EHU02305.1 117 VGLSEMLSRLPGQLSGGQRQrVALARCLLRERPVLLLD---E 155
                 67777777777777666666566777888888888876...3 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     3e-05     0.025       2      21 ..      28      47 ..      27      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                 ai+G + +GKStL+n + g
  EHU02305.1 28 LAILGPSGAGKSTLLNLIAG 47
                79**************9987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.4e-05     0.029      23      40 ..      29      46 ..       3      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-05
      AAA_23 23 lItGpNGaGKTTildAik 40
                +I Gp GaGK+T+l+ i 
  EHU02305.1 29 AILGPSGAGKSTLLNLIA 46
                69*************986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00055      0.47      30      66 ..      22      65 ..      14     119 .. 0.77
   2 ?    1.6   0.0       0.2   1.7e+02     166     189 ..     166     189 ..     156     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00055
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tGkpwlg.....p 66
                  +ge  ++ G++g+GK+tl+  +a  +   +G+   +     +
  EHU02305.1 22 AGRGERLAILGPSGAGKSTLLNLIAGFLPvsQGSLIMDgvdhtH 65
                5689999*************866664432336665555555543 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.2
      AAA_25 166 galvealeriarrtgaavllvhHv 189
                 g++++ ++ ++++  +++l+v H+
  EHU02305.1 166 GEMLNLVRTVCEAREITLLMVSHS 189
                 7889999999*************7 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.14      23      72 ..      26      76 ..      17      95 .. 0.74
   2 ?   -0.4   0.0      0.75   6.4e+02     104     142 ..     145     188 ..     127     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsllpplseeeale.vakiasvagkkeeekl 72
                    l ++Gp+G+GK+ l + +++ lp  + + +++ v + +sv  ++  + l
    EHU02305.1 26 ERLAILGPSGAGKSTLLNLIAGFLPVSQGSLIMDgVDHTHSVPAQRPVSML 76
                  568899*******************99888777635667777765554444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.75
  Mg_chelatase 104 lahnGvLfLDEl.....pefkrkvlevLRePledgevtisraka 142
                   l ++ vL+LDE      p ++ ++l+ +R+  e++e+t+   ++
    EHU02305.1 145 LRERPVLLLDEPfsaldPALRGEMLNLVRTVCEAREITLLMVSH 188
                   55677889998433333567788999999999999998866655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.5e-05     0.073      20      50 ..      16      46 ..       4      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.5e-05
                HHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB 20 erllakaGraqvvGltGvPGaGkstlvealg 50
                 r + +aGr +++ + G  GaGkstl++ ++
  EHU02305.1 16 MRFSLHAGRGERLAILGPSGAGKSTLLNLIA 46
                567789********************98665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.21       3      22 ..      26      45 ..      24      81 .. 0.82
   2 ?   -0.4   0.0      0.97   8.2e+02     108     135 ..     165     193 ..     163     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 +++i Gpsg+GK+tl++ +
  EHU02305.1 26 ERLAILGPSGAGKSTLLNLI 45
                6899************9877 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.97
      AAA_24 108 aeefrrllkklqelrk.nvifiahektrk 135
                 + e+ +l++++ e+r+ +  +++h+ ++ 
  EHU02305.1 165 RGEMLNLVRTVCEAREiTLLMVSHSLEDA 193
                 66999*******************98765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00065      0.55      21      42 ..      28      49 ..      18      65 .. 0.79
   2 ?   -2.7   0.0       4.8   4.1e+03       4      16 ..     104     116 ..     101     155 .. 0.64
   3 ?    0.6   0.0      0.46   3.9e+02      71      95 ..     179     205 ..     159     218 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00065
      AAA_30 21 avltGpAGtGKttalkalreaw 42
                 ++ Gp G+GK+t+l+ ++  +
  EHU02305.1 28 LAILGPSGAGKSTLLNLIAGFL 49
                5788***********9998665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.8
      AAA_30   4 aeQaaaveallts 16 
                 a+Q++ v++++++
  EHU02305.1 104 ADQRQQVATIAQQ 116
                 4444444444433 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.46
      AAA_30  71 stiakllkrlk..grarlepgtllivD 95 
                 + i  l+ ++   ++++++p+++++vD
  EHU02305.1 179 REITLLMVSHSleDAQQIAPRSVVVVD 205
                 333333333334466788888888888 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00087      0.74       2      20 ..      28      46 ..      27      61 .. 0.89
   2 ?    0.6   0.0      0.72   6.1e+02      51      80 ..     177     206 ..     134     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00087
      AAA_28  2 ivitGgestGKTtlleaLa 20
                 +i+G++++GK+tll+ +a
  EHU02305.1 28 LAILGPSGAGKSTLLNLIA 46
                68*************9876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.72
      AAA_28  51 dllafaervleeqleeeaaaaankvlfcDr 80 
                 ++ ++  +++ + le++++ a++ v+++D 
  EHU02305.1 177 EAREITLLMVSHSLEDAQQIAPRSVVVVDG 206
                 455666777777777777777888888776 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00032      0.27       2      28 ..      29      53 ..      28      57 .. 0.84
   2 ?   -1.9   0.0       3.5     3e+03      99      99 ..     146     146 ..      98     195 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
                EEEEBTTTTHHHHHHHHHTS--S---S CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilprgp 28
                a++G   +GKS++ln + g  +lp+++
  EHU02305.1 29 AILGPSGAGKSTLLNLIAG--FLPVSQ 53
                899**************99..457665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.5
                 T CS
   Dynamin_N  99 l 99 
                  
  EHU02305.1 146 R 146
                 3 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00024      0.21      24      43 ..      26      45 ..      11      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
       DUF87 24 rHlAilgsTGsGKSntvavL 43
                ++lAilg +G+GKS++  ++
  EHU02305.1 26 ERLAILGPSGAGKSTLLNLI 45
                689*************9988 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00098      0.83       2      20 ..      29      47 ..      28     119 .. 0.71
   2 ?   -0.2   0.0       1.6   1.3e+03      26      87 ..     139     212 ..     111     220 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00098
      AAA_18  2 lltGtpGvGKttlakeLsk 20
                ++ G++G+GK+tl + ++ 
  EHU02305.1 29 AILGPSGAGKSTLLNLIAG 47
                589**********999843 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.6
      AAA_18  26 vnlrdvakenglllevdpealdeskrldedkldklldaleenss..............aleegknlvidghlaele 87 
                    r++++e+  ll ++p+  +  + + ++ + +l++++ e+++                +  +++v+dg++ +  
  EHU02305.1 139 ALARCLLRERPVLLLDEPF--SALDPALRGEMLNLVRTVCEAREitllmvshsledaqQIAPRSVVVVDGRVYWDG 212
                 5556666666666666666..5555555555555555555555455566666555555455566668888776655 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00091      0.78       2      20 ..      29      47 ..      28      53 .. 0.86
   2 ?   -3.3   0.0         7     6e+03     111     126 ..      52      67 ..      48      73 .. 0.78
   3 ?   -1.9   0.0       2.7   2.3e+03     129     129 ..     188     188 ..     162     208 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00091
                    EEE-STTSSHHHHHHHHHH CS
  Cytidylate_kin  2 aiDGPagsGKssvaralae 20
                    ai GP+g+GKs++  ++a 
      EHU02305.1 29 AILGPSGAGKSTLLNLIAG 47
                    899**********999885 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7
                     BSSBEEEEESSIIIII CS
  Cytidylate_kin 111 kkarvvveGRDigtvv 126
                     ++++++++G D +  v
      EHU02305.1  52 SQGSLIMDGVDHTHSV 67 
                     5788999999988766 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.7
                     T CS
  Cytidylate_kin 129 d 129
                     +
      EHU02305.1 188 H 188
                     1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1523.50
//
Query:       EHU02306.1  [L=536]
Description: membrane component of thiamin ABC transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-16   58.7  19.3    1.2e-09   38.2   6.2    3.4  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   6.2   6.5e-14   1.2e-09       9     179 ..      80     264 ..      66     268 .. 0.81
   2 ?   -0.3   0.9     0.042   7.6e+02      29      61 ..     296     351 ..     281     367 .. 0.46
   3 !   34.6   5.2   8.1e-13   1.5e-08      12     176 ..     363     525 ..     353     531 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.5e-14
  BPD_transp_1   9 a.lnrnkkldkllrpliivllslPsfvlaillvlvf..............vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaral 90 
                   a ++r++++++ l++l  ++l lP++v ++ l+ v               v      ++  +++++ +++++p++++++ +al+s+p +++++a  l
    EHU02306.1  80 AlYRRRFPGRQGLLRLCAMTLVLPVLVAVFGLLTVYgrvgwlarlcvwlgVDYHFSPYGLQGILLAHVFFNLPLATRLMLQALESIPAEQRQLAAQL 176
                   3579999********************555555444688888999977753333345888889********************************** PP

  BPD_transp_1  91 GasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                     + w+ fr    P + + ++++ +l f++ +  ++ ++ lg++p  +t  l + ++  y++   g ++ l+++ l ++lv+ +l + +
    EHU02306.1 177 NIRGWHHFRLLEWPWLRRQLLPTGALIFMLCFASFATVLSLGGGPRATTIELAIFQALSYDYD-PGRAALLALIQLGCCLVLVLLSQRF 264
                   ******************************************888533333333333334433.4888888888888888888877665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.042
  BPD_transp_1  29 slPsfvlaillvlvf.......................vilsilghlilpviilll 61 
                   +l  ++l+++l++v+                       ++  +lg ++l v+++++
    EHU02306.1 296 GLALLLLLPPLIAVIingldgglrgalqqpalwqatftSLRIALGAGVLCVLLTTM 351
                   33333344444444344444444444444443333333333333333333333333 PP

  == domain 3  score: 34.6 bits;  conditional E-value: 8.1e-13
  BPD_transp_1  12 rnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnal 107
                   ++k   +++++   ++l++P +vla  ++l++   ++l +++ + v+++ +l a+py++ + ++ +r + + ++ +  alG s w ++  + l++++
    EHU02306.1 363 QRKLAAQFMDTSGMLILAMPGIVLATGFFLLLNATTGLPDAADGvVMFANALIAIPYALKVLENPMRDIAERYYHLCGALGISGWNRLTLIELRALK 459
                   56777889999999*********999988888788888888888789999*********************************************** PP

  BPD_transp_1 108 ppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilq 176
                   +p++  l++a ++++g++ ++ ++g+      ++l ++l++++ +   +  +++++++l+l+l+++ l+
    EHU02306.1 460 RPLAQALAFACVLSIGDFGVVALFGNA---DFRTLPFYLYQQIGAYRGADGAVTALLLLVLCLSLFTLM 525
                   *************************64...555555666666665555556677777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3978.33
//
Query:       EHU02307.1  [L=328]
Description: periplasmic substrate-binding component of an ABC superfamily thiamin transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-19   70.6   3.0    2.5e-19   70.2   3.0    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    5.2e-18   65.4   2.2    6.5e-18   65.0   2.2    1.1  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    2.7e-16   60.4   6.5    4.1e-16   59.8   6.5    1.2  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    3.2e-15   56.5   0.1    4.1e-15   56.2   0.1    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
       0.16   11.8   0.0       0.36   10.6   0.0    1.5  1  Imm27       Immunity protein 27


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   3.0   6.9e-23   2.5e-19       2     257 ..      41     278 ..      40     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 6.9e-23
                 HHHHHHHH-TEEEEEEE-.-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS..----EEEEEEE-EEE CS
   SBP_bac_8   2 lakefekktgvkvnvvta.asndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgk.lygvPyasetpyvli 98 
                 + k+fe++ g ++++v   ++  l + ++ + +  +a d+ v+  +++ l+++ + gl+a  sd+d      + + +v + +k +  vP++++   +++
  EHU02307.1  41 VKKAFEAQCGCELKYVALeDGVSLLNRVRLEGKNSKA-DV-VLGLDNNLLQAAQQTGLFA-KSDVD------TGKLQVPGGWKdTTFVPFDYGY-FAFV 129
                 6799*************977779*******9877776.54.4445455566555566766.46554......33333433333369*******8.9*** PP

                 EEHHHHHHS.---BHHHHHHHHHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE.-S..--SSTTTTTSBSEEEE- CS
   SBP_bac_8  99 ynkdllekaedpktwdellaaakklkgkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngkty.dtgadavsefanGevafting 196
                 ynk  l+ + +pk+++el++  ++ k+++++ dp +++   +ll  + +++ +d       +a e ++kl ++ +t+ + +++a  +f +Ge   ++++
  EHU02307.1 130 YNKNTLK-N-PPKSLKELVE-SPE-KWRVIYEDPRTSTPGLGLLL-WMQKVYGD-------KAPEAWQKLAKKTVTVtKGWSEAYGLFLKGESDLVLSY 216
                 *******.6.**********.666.67999988887744444444.33444333.......44455777776666553899****************98 PP

                 TTH.HHHHH-T.TTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHH CS
   SBP_bac_8 197 swd.iaaaqka.gkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalae 257
                 + + +  + ++ +++++a++ ++g+ ++++  a ++n+k+++l A +F++++++p+ q+   +
  EHU02307.1 217 TTSpAYHIIEEkKDNYAAAPFAEGNYLQVEVAARLANSKQPKL-AEQFMQFMVTPAFQNTIPT 278
                 866455555552789999999*********************9.***********98876544 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   2.2   1.8e-21   6.5e-18       1     220 [.      74     290 ..      74     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 1.8e-21
   SBP_bac_6   1 nplpdlilsfdkdflekfieeglfqpld.panlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsd 98 
                 n+++d++l++d+++l+ ++++glf++ d ++   +v+      g+kd   +++p+++g++ +++nk  lk+   Pks ++L++   k +v   ++++s+
  EHU02307.1  74 NSKADVVLGLDNNLLQAAQQTGLFAKSDvDTGKLQVP-----GGWKDT--TFVPFDYGYFAFVYNKNTLKNP--PKSLKELVESPEKWRVIYEDPRTST 163
                 689**********************887545555666.....999998..*******************777..********777788*********89 PP

   SBP_bac_6  99 lfealllalykdfgedgvkkllrnlkanlhpaq..mvkaagslesge..pavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkel 192
                 +   lll + k +g d++ + + +l+++   ++    +a+g   +ge   ++s ++  +++i+ ekk  +n++   + +G ++ +++++  ++ k+++l
  EHU02307.1 164 PGLGLLLWMQKVYG-DKAPEAWQKLAKKTVTVTkgWSEAYGLFLKGEsdLVLSYTTSPAYHIIEEKK--DNYAAAPFAEGNYLQVEVAARLANsKQPKL 259
                 99999988888444.4555555555555555555666777777777754577777777788888888..8***************************** PP

   SBP_bac_6 193 akafidfllspevqailakaggvfPvv...t 220
                 a++f+ f++ p +q+ +   +  +Pv+   +
  EHU02307.1 260 AEQFMQFMVTPAFQNTIPTGNWMYPVIktdL 290
                 ***************9998888899965441 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   6.5   1.1e-19   4.1e-16      13     314 ..      40     273 ..      34     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.1e-19
                 HHHHHHHHHHTTEEEEEEEE.CHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHT.TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEEES CS
   SBP_bac_1  13 lvakafekehpgikVeiesv.gsgslaqkltlaiaaGdgpaDviav.dndwiarlaka.glllpldpyvkaylapgvkdaadklsssvlpkildskvly 108
                 +v kafe+++ g + +++   ++ sl +  ++++++ +  aDv+ + dn  +   a++ gl++  d ++++  +pg               ++d     
  EHU02307.1  40 AVKKAFEAQC-GCELKYVALeDGVSLLN--RVRLEGKNSKADVVLGlDNNLLQ-AAQQtGLFAKSDVDTGKLQVPGG--------------WKD---TT 117
                 4657799988.*********99999999..99999999889*****6665555.56665888888888888865553..............333...57 PP

                 .EEEE.EEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHHH CS
   SBP_bac_1 109 .vPly.aargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvklya 205
                  vP++ ++ +++YNk  ++    +pp++ +elve  +k +   + p            ++   l l++++ + ++dk            a+++++kl  
  EHU02307.1 118 fVPFDyGYFAFVYNKNTLK----NPPKSLKELVESPEKWRVIYEDP-----------RTSTPGLGLLLWMQKVYGDK------------APEAWQKLA- 188
                 7****77************....7899*****************99...........44444444444444444444............666666666. PP

                 HHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHHH CS
   SBP_bac_1 206 vanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpeaAkkF 304
                         k  ++ +k++++a++lf +Ge ++ ++++++           ++  + e++k+++++ap++ g +       +   a +++sk+p+ A++F
  EHU02307.1 189 --------KKTVTVTKGWSEAYGLFLKGESDLVLSYTTS-----------PAYHIIEEKKDNYAAAPFAEGNYL-----QVEVAARLANSKQPKLAEQF 263
                 ........9999*************************99...........888999999999999999876555.....9******************* PP

                 HHHHTSHHHH CS
   SBP_bac_1 305 ldfllspeaq 314
                 ++f+ +p+ q
  EHU02307.1 264 MQFMVTPAFQ 273
                 ******9855 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.1   1.1e-18   4.1e-15      15     223 ..      40     275 ..      23     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.1e-18
                 HHHHHHHHHH-...--EEEEESSHHHHHHHHHHH...-SEEEESSH.HHHHHHHHGGGGG................GG-EEEEEEEEEEEESTT-.TT- CS
  SBP_bac_11  15 elaaaFeahtg...vkvevsaggsgklarqiadga.rpDvwipassawlellaaaglvqa................esavplassplviavpkgn.pkk 92 
                 ++ +aFea+ g     v+++ g s   + ++++++ ++Dv++  + + l+++++ gl ++                 + vp+ +   +++++k++  ++
  EHU02307.1  40 AVKKAFEAQCGcelKYVALEDGVSLLNRVRLEGKNsKADVVLGLDNNLLQAAQQTGLFAKsdvdtgklqvpggwkdTTFVPFDYGYFAFVYNKNTlKNP 138
                 567888888885533356667777777777777779******9999***********9999**************99*****************95558 PP

                 --SHHHHHH.S.S--EEEE--T-TTTTHH.HHHHGGG.--..HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH.....HSTTSSEEEE- CS
  SBP_bac_11  93 ikgwadLlk.p.glklavadPttspsGlaalalleaa.ga..qellkalekkvvklgessrqlltaveageadagivyeseakaa...engdkleavyl 183
                 +k++++L   p ++++++ dP+ts+ Gl  l  +++  g+  +e +++l+kk+v+ +++ + ++  +  ge d++++y ++ +++   e++d+  a + 
  EHU02307.1 139 PKSLKELVEsPeKWRVIYEDPRTSTPGLGLLLWMQKVyGDkaPEAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHiieEKKDNYAAAPF 237
                 99*******63699**************5555555442446699**********999999******************998877778678888888899 PP

                 -TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHH CS
  SBP_bac_11 184 peglnldpldypaavlkkaakreaAraFlafLrspeaqai 223
                  eg +l   + +aa l+++++++ A+ F++f+ +p+ q++
  EHU02307.1 238 AEGNYL--QVEVAARLANSKQPKLAEQFMQFMVTPAFQNT 275
                 999998..45567899********************9987 PP

>> Imm27  Immunity protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001      0.36      22      41 ..     141     160 ..     139     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0001
       Imm27  22 kLkelksdedgwetlYkdpn 41 
                  Lkel++++++w+  Y+dp+
  EHU02307.1 141 SLKELVESPEKWRVIYEDPR 160
                 69****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2446.93
//
Query:       EHU02308.1  [L=392]
Description: broad specificity sugar efflux system [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-32  112.8  56.8    1.4e-26   93.2  37.4    2.1  2  MFS_1       Major Facilitator Superfamily
    1.6e-05   23.9  27.7    0.00086   18.3  14.8    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2  37.4   1.6e-30   1.4e-26       2     294 ..      19     301 ..      18     303 .. 0.91
   2 !   27.9  14.8   1.2e-10   1.1e-06      72     167 ..     294     385 ..     291     392 .] 0.90

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 1.6e-30
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfG.rrr.vlllglllfalglllllfasslw.lllvlrvlqGl 97 
                 +++af+ + a ++ +p+l+l+l+++ ++ p  +gl +tl a++ +v s+ ++  sdr+G rr  +ll+++l++a + ll++f + ++ +l+ l vl + 
  EHU02308.1  19 MVTAFILGVAGALQAPTLSLFLSREVQVPPLWVGLFFTLNAVAGIVVSMMIAKRSDRVGdRRNsILLCCMLALANA-LLFAF-TRHYlTLITLGVLLSS 115
                 6799*******************************************************66668999999999999.88888.777779********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergrai..gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                  a +++p   al+++++    r  ++  +++ a +sl+ ++gp+l+ +la ++g+  +f ++a++++l+f+l  ++++++ ++r  +  +       + 
  EHU02308.1 116 LANVAMPQLFALAREYADSASREVVMfsSIMRAQVSLAWVIGPPLSFALALNFGFVTLFSVAAGLFFLCFLL--IWFTVPSVPRTASLMQSG-----GI 207
                 *****************99766666666*****************************************998..888888888887766555.....55 PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                 pl+  w++   +     l++a+ l++++++++ + +pl++ ++lgl+   lag+l++ +a + ++++++ag++++r+g+r+++  a++++++++ gl+l
  EHU02308.1 208 PLSG-WRIRDVRI----LFAASTLMWTCNTMYIIDMPLWISTDLGLP-ENLAGILMGTAAGLEIPVMIVAGFYAKRWGKRNMMAAAVAAAVVFYSGLIL 300
                 5555.55555554....******************************.89***********************************************99 PP

       MFS_1 294 l 294
                 +
  EHU02308.1 301 F 301
                 7 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 1.2e-10
       MFS_1  72 falglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvl 167
                 f +g l+l+  +s+ +ll+l v+ +l+ g+++ +g+ ++ d+ p+ + g a+ l++ ++s G+il+ l  g+l++++g  +v++++a++sl+ +v+
  EHU02308.1 294 FYSG-LILF--HSHLALLILQVFNALFIGVVAGIGMLWFQDLMPG-RAGAATTLFTNSISTGIILAGLCQGALVEHFGHGSVYWVIAAISLVTLVM 385
                 4445.4555..9999******************************.***********************************************884 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   4.4   8.1e-06     0.072     224     323 ..      12     113 ..       7     140 .. 0.77
   2 !   18.3  14.8   9.6e-08   0.00086     182     363 ..     178     352 ..     150     374 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-06
  MFS_1_like 224 npeviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhv.klliiallayilrfllyaiienawlvlpie 320
                 np  ++f+++a+ilg++ ++    l+l+L  e++ +   +G + +l +va i++ ++  k  +++G + + ++++ ++  +  ll a+++    ++ + 
  EHU02308.1  12 NPVFFAFMVTAFILGVAGALQAPTLSLFLsREVQVPPLWVGLFFTLNAVAGIVVSMMIAKRSDRVGDRrNSILLCCMLALANALLFAFTRHYLTLITLG 110
                 688899***********************99***********************************752566667777777777788884444444333 PP

  MFS_1_like 321 vLh 323
                 vL 
  EHU02308.1 111 VLL 113
                 332 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 9.6e-08
  MFS_1_like 182 llyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfff 279
                 + ++++ +l+i ++v++++   +  ++ ++   + + ++i   + v i++++ +++ +++ ++   + l++  +lg ++ l+G+l+   + +eip+ ++
  EHU02308.1 178 AGLFFLCFLLIWFTVPSVPRTASLMQSGGI---PLSGWRI---RDVRILFAASTLMWTCNTMYIIDMPLWIsTDLGLPENLAGILMGTAAGLEIPVMIV 270
                 333444444444444444444444333333...3445555...788999999999999999999999999999************************** PP

  MFS_1_like 280 aeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGr 363
                 a    ++ G ++++ +a+ a ++ ++++ ++++   +l+++v++++ +g++ ++++ + ++++p ++ a +  + ++++ g   
  EHU02308.1 271 AGFYAKRWGKRNMMAAAVAAAVVFYSGLILFHSHLALLILQVFNALFIGVVAGIGMLWFQDLMPGRAGAATTLFTNSISTG--I 352
                 ******************************************************************999876666665444..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2786.20
//
Query:       EHU02309.1  [L=201]
Description: 3-isopropylmalate isomerase subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-39  135.8   0.0    1.4e-39  135.4   0.0    1.1  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0     8e-44   1.4e-39       2     130 ..       3     126 ..       2     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 8e-44
                  CCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHH CS
  Aconitase_C   2 ekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrl 99 
                  ek+++ +Gl ++++++nvdtd++ipkqf++ ++++ +g++l++++r+ ++++l  ++++d+v++ ++yk  ga++++++ +nfG+GSSRehA++al +
   EHU02309.1   3 EKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRVAFGAHLFNDWRFLDDHGL--EPNPDFVLNFPEYK--GASILLAR-ENFGCGSSREHAPWALTD 95 
                  79**************************************************9..79************..*****999.****************** PP

                  TTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 100 lGikaviaeSFerIfennliknglLplefke 130
                  +G+k+via+SF++If+ n+++n lLp+++ e
   EHU02309.1  96 YGFKVVIAPSFADIFYGNSFNNQLLPVTLTE 126
                  ***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1589.93
//
Query:       EHU02310.1  [L=465]
Description: 3-isopropylmalate isomerase subunit, dehydratase component [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-163  545.2   0.3   1.6e-163  545.0   0.3    1.0  1  Aconitase  Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
        0.2   11.1   0.3       0.42   10.1   0.3    1.5  1  Nodulin    Nodulin


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  545.0   0.3  1.8e-167  1.6e-163       2     461 .]       7     456 ..       6     456 .. 0.96

  Alignments for each domain:
  == domain 1  score: 545.0 bits;  conditional E-value: 1.8e-167
   Aconitase   2 kiwdahlvee...eg.iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaaka 96 
                 k++dah+v+e   e+ ++y+ dr+l+++vt++qa+ +l+a +++vr++++t+at+dh+v+++    +++        + + e++r   +++ L +++++
  EHU02310.1   7 KLFDAHVVHEapnETpLLYI-DRHLIHEVTSPQAFDGLRAHGRKVRQPSKTFATMDHNVSTQ---TKDI--------HASGEMAR--IQMQELIKNCAE 91 
                 78999999665543368888.*****************************************...2222........33456666..************ PP

   Aconitase  97 fgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigkl 192
                 fg+++++++   qGIvH++++E+g++lpg+t+v++DSHT+++g++G la+G+G++e+e+v+++q+l++ + k++++++tG++ +g+takD+vla+igk 
  EHU02310.1  92 FGVQLYDLNhpfQGIVHVIGPEQGMTLPGMTIVCGDSHTATHGAFGSLAFGIGTSEVEHVFATQTLKQGRAKTMKIEVTGTVAPGITAKDIVLAIIGKT 190
                 *******99999*************************************************************************************** PP

   Aconitase 193 rkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkvleldlstleps 290
                 + +g++g+vvEf+G+++e+Ls+e+r+T++NMa+E+GA++gl+++de+t++YLk  gr+ ++ ++e++++a++++ +l++d+da++d+v++l +++++p+
  EHU02310.1 191 GSAGGTGHVVEFCGSAIEALSMEGRMTLCNMAIEMGAKAGLVAPDETTFAYLK--GRQFSP-EGEKWAQAVEYWrTLKSDPDAKFDRVVTLRAEEIAPQ 286
                 *****************************************************..******.7***********88*********************** PP

   Aconitase 291 vagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGSev 386
                 v+++++P ++++++ +++ + +f++ +e+++aekal+y +l++g kl+d+++d+++igSCTNs++ed+raaa++++     g+kv+pgv+++v+PGS+ 
  EHU02310.1 287 VTWGTNPGQVIAVDAQIPdPaSFADPVERASAEKALAYmNLQPGIKLTDVSIDKVFIGSCTNSRIEDLRAAAAIAK-----GRKVAPGVQALVVPGSGP 380
                 *****************97569****************99************************************.....****************** PP

   Aconitase 387 vkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 vka++eaeGl++i+ +aGfe++ +gCs+C++ n+drl++ge+++s+sNRNFegRqg+++r++L+SP++++aaA++G
  EHU02310.1 381 VKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAmNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVNG 456
                 **************************************************************************98 PP

>> Nodulin  Nodulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   4.6e-05      0.42      14      41 ..     194     221 ..     188     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.6e-05
     Nodulin  14 dgtshvaercssgsealhgegglalclf 41 
                  gt hv e c s  eal  eg ++lc +
  EHU02310.1 194 GGTGHVVEFCGSAIEALSMEGRMTLCNM 221
                 689***********************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3718.60
//
Query:       EHU02311.1  [L=363]
Description: 3-isopropylmalate dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.7e-135  449.5   0.0   8.7e-135  449.3   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.3   0.0  4.8e-139  8.7e-135       1     347 [.       6     354 ..       6     355 .. 0.98

  Alignments for each domain:
  == domain 1  score: 449.3 bits;  conditional E-value: 4.8e-139
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS....SSSSSHHH.HHHHHHHHTTE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk....ekevrpen.gLlaLrkeldl 94 
                 +ia+l gdgiGpev+++a+kvl+a++++ +l+++++e+dvGg+aid++geplp +t++ +++a+++l+g+vg+pk    +   +pe+ +Ll Lrk+++l
  EHU02311.1   6 HIAVLAGDGIGPEVMAQAIKVLDAVRQRFNLRITTSEYDVGGIAIDRHGEPLPPATVAGCEQANAILFGSVGGPKwehlPPASQPERgALLPLRKHFKL 104
                 599***************************************************************************999999**999********** PP

                 EEEEEEEE-BCCTTCCSSBTHHHHCT.-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHH CS
      Iso_dh  95 fanlrpvkvfeklkvksplkrevvee.vdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlks 192
                 f+nlrp+ ++  l++ +pl+++++   +d+++vReltggiYfg++k ++gs+ ++e a+dt++y++ eieriar+afe A+kr ++kvt+vdKanvl++
  EHU02311.1 105 FSNLRPAALYSGLEAFCPLRSDIAARgFDILCVRELTGGIYFGQPKGREGSG-PHERAFDTEVYHRFEIERIARQAFESARKR-RNKVTSVDKANVLQT 201
                 **********************98877***********************96.9999**************************.*************** PP

                 HHHHHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-TH CS
      Iso_dh 193 selwrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkdkaNpi 291
                 s +wr+iv+e+a+ +ypd++l+h+++D+a+mql+k+p+qfdV++++NlfGDilSDe+a+++Gs+G+lpSasl+e++++++E++ Gsapdiag+++aNpi
  EHU02311.1 202 SVMWREIVNEIAK-DYPDVQLSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLSEDGFGLYEPAGGSAPDIAGQNIANPI 299
                 *************.************************************************************************************* PP

                 HHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTSTCCCHHHHHHHH CS
      Iso_dh 292 avilSaalmLryslgleeaAdkiekAvekvleagivTkDlageaakevstsefgda 347
                 a+ilS +l+Lrysl+++eaA+ ie+A++++l++g++TkDlag    ++st+e+g  
  EHU02311.1 300 AQILSLSLLLRYSLNADEAAASIERAISRALAEGYRTKDLAGDG-PAISTDEMGSI 354
                 ******************************************99.9*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2788.72
//
Query:       EHU02312.1  [L=520]
Description: 2-isopropylmalate synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.7e-105  351.7   4.0     4e-105  351.1   4.0    1.3  1  HMGL-like   HMGL-like
    3.7e-36  124.0   0.4    7.3e-36  123.0   0.4    1.5  1  LeuA_dimer  LeuA allosteric (dimerisation) domain
  ------ inclusion threshold ------
      0.085   13.7   0.1         70    4.4   0.0    3.8  3  DUF3235     Protein of unknown function (DUF3235)


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.1   4.0  6.7e-109    4e-105       1     264 []       4     273 ..       4     273 .. 0.99

  Alignments for each domain:
  == domain 1  score: 351.1 bits;  conditional E-value: 6.7e-109
                 B-EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES CS
   HMGL-like   1 kvkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiat 99 
                 +v+i+dttLRDGeqal+a+lsv+ekl+ia aL+++gvd++Evgfp++s++dfe+v++ia+++k++r+++l+r++e+di+aa+e+l++a+a r+h+fiat
  EHU02312.1   4 QVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQTIARTIKNSRVCGLARCVEQDIDAAYESLRVAEAFRIHTFIAT 102
                 589************************************************************************************************ PP

                 -HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-...GGGEEE CS
   HMGL-like 100 selhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervk..dkvilsv 196
                 s +h+ +kl+ +  ev+++a+++vk+ar++++dve+s+ed +rt++++l+++veaa++aGat+ini+DtvG++ Pne+a++is+l +rv+  dk+ilsv
  EHU02312.1 103 SPMHIATKLRSTLPEVIERAVRMVKRARNYTDDVEFSCEDGGRTPIDDLCRMVEAAINAGATTINIPDTVGYTLPNEYANIISQLINRVPniDKAILSV 201
                 *************************************************************************************************** PP

                 EEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT....-B----HHHHHHHHHHH CS
   HMGL-like 197 HcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg....vdtgldlqklrsiaalv 264
                 H+H+dlG+A++n++aAv+aGa++v+gt+nGlGeraGn+alee+++a+++++    v+t++ +++++++++++
  EHU02312.1 202 HTHDDLGMATGNAIAAVQAGARQVEGTLNGLGERAGNCALEEVIMAIKTRQqimnVHTNIHHHEIYRTSQMI 273
                 *********************************************************************986 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.4   1.2e-39   7.3e-36       1     132 [.     369     499 ..     369     500 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 1.2e-39
                 XXXXXXXXXXXXXXXXXXX.--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEEEE CS
  LeuA_dimer   1 evtdedlealvkdelleae.erlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaevrV 98 
                 +v+d+dleal+    +++e e+++l++++v+sg++ ++ta+v+l + ++++k+++a+GnGpvdA+++A++++++ +++L +Y++ a ++g++a+++v++
  EHU02312.1 369 QVFDYDLEALAFIDKQNEEpEFFQLNDFTVQSGSSITATASVNLGC-GEQTKSEAATGNGPVDAVYQAINRITQFNAELVNYKLTAKGHGENALGQVDI 466
                 699*******9999999888**************************.9999************************************************ PP

                 EEE--GGGEEEEEEEESSHHHHHHHHHHHHHHHH CS
  LeuA_dimer  99 elevddgkkvsgvGvdsdiveASlkAlisalnrl 132
                  ++ ++++k++gvG+++dive+S+kA+++aln++
  EHU02312.1 467 VVS-YNNRKFHGVGLATDIVESSAKAMVNALNNI 499
                 ***.77777***********************86 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.038   2.3e+02      15      56 ..     213     254 ..     200     271 .. 0.81
   2 ?    4.4   0.0     0.012        70      26      59 ..     336     369 ..     330     378 .. 0.85
   3 ?    1.3   0.0      0.11   6.6e+02      34      52 ..     420     438 ..     405     445 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.038
                 .S-HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHT CS
     DUF3235  15 qapApvaaaaataqkavadlaatsdelavDavydalkdalak 56 
                 +a A v+a a +++ + + l++ +   a+ +v+ a+k + + 
  EHU02312.1 213 NAIAAVQAGARQVEGTLNGLGERAGNCALEEVIMAIKTRQQI 254
                 48899*******************************987554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
                 HHHHHHHHHT--HHHHHHHHHHHHHHHHHHTTT- CS
     DUF3235  26 taqkavadlaatsdelavDavydalkdalakaGi 59 
                  ++++ ++++ t++e ++D +yda  + + k G 
  EHU02312.1 336 AVKHRMEEMGYTESEYNLDSLYDAFLKLADKKGQ 369
                 677788999***************9999999885 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.11
                 HT--HHHHHHHHHHHHHHH CS
     DUF3235  34 laatsdelavDavydalkd 52 
                 + a++    vDavy+a+++
  EHU02312.1 420 SEAATGNGPVDAVYQAINR 438
                 4556667889*****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3746.32
//
Query:       EHU02313.1  [L=574]
Description: acetolactate synthase III, large subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-59  198.2   0.1    1.5e-56  190.7   0.0    2.3  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.3e-49  167.9   0.0    5.5e-48  162.6   0.0    2.7  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
      6e-49  165.3   0.0    1.1e-48  164.5   0.0    1.4  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0022   17.8   0.1     0.0058   16.4   0.0    1.7  2  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
     0.0065   16.0   0.0       0.16   11.5   0.0    2.3  2  PPS_PS        Phosphopantothenate/pantothenate synthetase
  ------ inclusion threshold ------
      0.086   12.9   0.0       0.16   12.0   0.0    1.4  1  ASXH          Asx homology domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.0   4.9e-60   1.5e-56       2     166 ..       5     168 ..       4     173 .. 0.98
   2 !    5.1   0.0    0.0051        15      80     155 ..     455     541 ..     429     550 .. 0.74

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 4.9e-60
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   ++ae++vr L ++gv++vfg+pG+ +l+++dal+   gi++vl+rhEqga+++Adg+aratg++gvvlvtsgpGatna+t++a+A+ d+iPl++lsg
    EHU02313.1   5 SGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALQTVGGIDHVLVRHEQGAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVILSG 101
                   689********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC- CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlle 166
                   ++p+sl+g +++q e+d +++ rpv+k+++ v++ ee+p +l++A+  a sgrpgPv+++lpkd+l+ 
    EHU02313.1 102 QVPSSLIGYDAFQ-ECDMVGISRPVVKHSFLVKNTEEIPTVLKKAFWLASSGRPGPVVIDLPKDILNP 168
                   *************.**************************************************9875 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0051
                   HHHHHHHHHHT--EEEEEEE--CCCHH.............S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EE CS
  TPP_enzyme_N  80 ltalaeAkvdriPllvlsgdrptslrg.............qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPv 155
                   +  l +A +  +P+lvl  ++                   q ++++  d + l++ + +    +++p+el+e l  A++t+++gr   v
    EHU02313.1 455 IQELSTALQYDLPVLVLNLNNRFLGMVkqwqdmiysgrhsQSYMESLPDFVRLAEAYGHVGIAISHPAELEEKLTLALETLAKGRL--V 541
                   67788888888888888776544333337888888887777777755599999***************************977764..5 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.048   1.4e+02     109     152 ..     114     160 ..     100     161 .. 0.78
   2 !  162.6   0.0   1.9e-51   5.5e-48       1     153 []     394     545 ..     394     545 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.048
                   ----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH.....CSSSEEEEE CS
  TPP_enzyme_C 109 kpvdfaklaealGak.garvekadveeleealkeal.....ekkgpalie 152
                   ++ d++ + + + +k  + v+++  ee+  +lk+a+      + gp++i+
    EHU02313.1 114 QECDMVGISRPV-VKhSFLVKNT--EEIPTVLKKAFwlassGRPGPVVID 160
                   566666666666.5546676677..**********9999999999*9998 PP

  == domain 2  score: 162.6 bits;  conditional E-value: 1.9e-51
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++++ aa ++ + +pr++++sgglgtmG+glpaA+G+k+a pd++v++++GDG+++m++qel+ta +++lp++v+ lnN+ +gm++++q++ ++
    EHU02313.1 394 DVGQHQMFAALYYTFDKPRRWINSGGLGTMGFGLPAALGVKMALPDETVICVTGDGSIQMNIQELSTALQYDLPVLVLNLNNRFLGMVKQWQDMIYS 490
                   89*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH...CSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkeal...ekkgpaliev 153
                   +r+s+ +   +  +df++laea+G  g+ ++++  +elee+l  al   +k++ ++++v
    EHU02313.1 491 GRHSQSYM--ESLPDFVRLAEAYGHVGIAISHP--AELEEKLTLALetlAKGRLVFVDV 545
                   ****9873..5555************9998888..**********99989999999997 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.0   3.6e-52   1.1e-48       1     136 [.     196     330 ..     196     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 3.6e-52
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   i++a++ l aa +pvi++Ggg+++s +++el +lae+l+iPv+t+lmg g++p +h +++gmlg+hg+++an+ +++aDl++ +G+rfdd rtt++ 
    EHU02313.1 196 IKRALQTLLAAHKPVIYAGGGAITSSCEAELLQLAERLNIPVTTSLMGLGAFPGSHRQCVGMLGMHGTYEANMTMHNADLIFGVGVRFDD-RTTNNL 291
                   799***************************************************************************************.999999 PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketlea 136
                    +++p+a+++hididp++i+k++ +d++ivgd+k+tl++
    EHU02313.1 292 AKYCPNATVMHIDIDPTSISKTVSADIPIVGDAKQTLQQ 330
                   9************************************98 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.9e-06    0.0058      38      94 ..      43     101 ..      27     176 .. 0.88
   2 ?   -4.1   0.0       3.5     1e+04     135     152 ..     454     471 ..     451     472 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-06
                 .EEEE-SSHHHHHHHHHH.HHCTT-EEEE.EEECCHHHHCCCCHHHHHHTT--EEEEEE CS
       POR_N  38 vevvqmesEigaisaviG.AaaaGaraaT.aTSgqGllLmienlglaageelPvvivvv 94 
                 ++ v +  E ga+ ++ G A a+G  +++  TSg+G   +i  +  a ++ +P+vi   
  EHU02313.1  43 IDHVLVRHEQGAVHMADGlARATGEVGVVlVTSGPGATNAITGIATAYMDSIPLVILSG 101
                 56778899**********88899*9987747************************9865 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.5
                 HHHHHHHHHHCTSEEEEE CS
       POR_N 135 alvAfnlAekvrvPvivl 152
                  ++ + +A+++ +Pv+vl
  EHU02313.1 454 NIQELSTALQYDLPVLVL 471
                 566778999999999986 PP

>> PPS_PS  Phosphopantothenate/pantothenate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.048   1.4e+02       1      35 [.     203     238 ..     203     244 .. 0.82
   2 !   11.5   0.0   5.4e-05      0.16      87     152 ..     272     342 ..     259     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.048
      PPS_PS   1 lllakkpvisvNGN.taaLvaeeiveLaealgakle 35 
                 ll+a+kpvi   G  +++ ++ e+++Lae l+ ++ 
  EHU02313.1 203 LLAAHKPVIYAGGGaITSSCEAELLQLAERLNIPVT 238
                 799******9876515678999********999876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.4e-05
      PPS_PS  87 saDvvl.vplEDGDRa.eaLvkm..gKkviaiDLNPlsRtar.tatitivdnvvRalpnlteavkelkkks 152
                 +aD+++ v +   DR+ + L+k   + +v+ iD+ P s +   +a+i+iv +   +l+++ e +++ + k+
  EHU02313.1 272 NADLIFgVGVRFDDRTtNNLAKYcpNATVMHIDIDPTSISKTvSADIPIVGDAKQTLQQMLELLDHTEAKQ 342
                 56666556666667752456665235789*******9987552689****************999885544 PP

>> ASXH  Asx homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.16      65     111 ..     453     499 ..     433     509 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
        ASXH  65 edvdadsalrl.sipalealrnnefFrsacaefqerLaeGeydpeelq 111
                 +++++ s++ +   p l +l  n+ F+  ++++q+ +++G++ +++++
  EHU02313.1 453 MNIQELSTALQyDLPVL-VLNLNNRFLGMVKQWQDMIYSGRHSQSYME 499
                 34333333333356666.8899********************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4121.14
//
Query:       EHU02314.1  [L=163]
Description: acetolactate synthase III, thiamin-dependent, small subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.0   1.2    1.8e-23   82.6   0.5    2.1  2  ALS_ss_C  Small subunit of acetolactate synthase
    3.6e-15   55.4   0.0    6.2e-15   54.7   0.0    1.4  1  ACT       ACT domain
    9.1e-15   54.3   0.1    1.9e-14   53.3   0.1    1.6  1  ACT_5     ACT domain
    8.9e-06   26.2   0.2    4.3e-05   24.0   0.1    2.0  2  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ALS_ss_C  Small subunit of acetolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.048   2.1e+02      35      57 ..      44      66 ..      36      77 .. 0.80
   2 !   82.6   0.5   3.9e-27   1.8e-23       1      74 []      84     158 ..      84     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.048
                TEEEEEEEE-HHHHHHHHHHS-G CS
    ALS_ss_C 35 dsliieltgteekidaliellkp 57
                + ++i+ +g+++ ++++ + l +
  EHU02314.1 44 SRMTIQTVGDQKVLEQIEKQLHK 66
                56999*****9999999998864 PP

  == domain 2  score: 82.6 bits;  conditional E-value: 3.9e-27
                 EEEEEEEEE.-SCHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS-GGG.EEEEEEEEEEEEEST CS
    ALS_ss_C   1 RElaLiKVkaekeerseileiaeifrakivdvspdsliieltgteekidaliellkpfg.ilevvRtGrvAleRG 74 
                 RE++L+K++a+   r+e+++ aeifr++i+dv+p+ ++++l+gt++k+da+++ ++++  i+ev+R+G+v+++RG
  EHU02314.1  84 REIMLVKIQATGYGREEVKRSAEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLSTVREVAeIVEVARSGIVGVSRG 158
                 9******************************************************97766**************8 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.4e-18   6.2e-15       2      66 ..       4      68 ..       3      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.4e-18
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66
                +l+v+++++ G+L+rv g++++rg+Ni+s+++++++d   +++++  v+d+++le+++++l+kl 
  EHU02314.1  4 ILSVLLENESGALSRVVGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDQKVLEQIEKQLHKLV 68
                699************************************************************96 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.1   4.1e-18   1.9e-14       2      62 .]      12      73 ..      11      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.1e-18
       ACT_5  2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQleKLidVlkV 62
                + g+L Rv +++++rg++++sl++ +t+d + +r++++  + ++ +e++ +Ql KL+dVl+V
  EHU02314.1 12 ESGALSRVVGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGdQKVLEQIEKQLHKLVDVLRV 73
                579**************************************9*****************998 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   9.6e-09   4.3e-05       9      79 ..       5      74 ..       4      74 .. 0.91
   2 ?   -0.4   0.0       0.4   1.8e+03      60      80 .]     129     149 ..     120     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.6e-09
       ACT_4  9 leveaedrkglLaditqviseekanivsvnaktrkkdglaeikitve.VkdvehLsrviakLraipgVisVe 79
                l+v  e+++g+L++++ ++s+ + ni+s+++  +  d  +  ++t++ V d + L+++ ++L+++ +V +V+
  EHU02314.1  5 LSVLLENESGALSRVVGLFSQRGYNIESLTVAPT--DDPTLSRMTIQtVGDQKVLEQIEKQLHKLVDVLRVT 74
                68999****************************6..4577777777559********************995 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.4
       ACT_4  60 ehLsrviakLraipgVisVeR 80 
                 ++L+  +  +r++ ++ +V R
  EHU02314.1 129 DKLDAFLSTVREVAEIVEVAR 149
                 678888889999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1224.47
//
Query:       EHU02315.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02315.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02315.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02315.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02315.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 900.50
//
Query:       EHU02316.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02316.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1031.58
//
Query:       EHU02317.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-97  324.2   3.7    4.5e-96  321.6   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.4e-16   59.2   0.1    1.3e-15   57.3   0.1    2.1  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.6e-14   54.1   1.5    3.4e-14   52.9   1.5    1.6  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   14.9   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.032   13.8   2.2       0.04   13.5   1.0    1.6  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
       0.05   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
       0.05   12.1   7.4      0.077   11.5   7.4    1.2  1  FUSC             Fusaric acid resistance protein family
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.15   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
        0.2   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.3   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.83    8.8   3.0        1.2    8.3   3.0    1.1  1  TMPIT            TMPIT-like protein
        1.2    9.3   5.6        2.7    8.1   5.6    1.5  1  CREPT            Cell-cycle alteration and expression-elevate
          2    7.9   8.1        4.3    6.8   8.1    1.4  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.4    7.6   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  321.6   0.0   5.5e-99   4.5e-96       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU02317.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 321.6 bits;  conditional E-value: 5.5e-99
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02317.1 187 SYAGPGLLARIVTAKFAEHTPDYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02317.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l+ w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02317.1 380 GSPADERLAVRKEQTIPLMQSLYGWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.6e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.6e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02317.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.2e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.2e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02317.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.3e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.3e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU02317.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.6e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02317.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4    0.0001     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.17   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02317.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02317.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   4.9e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.7   0.0         2   1.7e+03     125     146 ..     351     377 ..     344     441 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU02317.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael.....e 146
                   d+ a TPt +   +++++ +l     e
    EHU02317.1 351 DVHARTPTDITTEALKRIGKLyaieaE 377
                   778899999988888766665444330 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.025        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.026        21       9      40 ..     341     372 ..     339     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02317.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU02317.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02317.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.5e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU02317.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU02317.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.4e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.4e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02317.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0    0.0001     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02317.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00042      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00042
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU02317.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00043      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2      0.29   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02317.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU02317.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00038      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02317.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00081      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00081
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02317.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0012         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.8   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02317.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02317.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0042       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2     0.099        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02317.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.099
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02317.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0015       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02317.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0034       2.7      45     141 ..      11     115 ..       6     117 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0034
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU02317.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU02317.1 110 RKPLPA 115
                 999996 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0053       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU02317.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU02317.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                     1038  (0.057895); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.38
# Mc/sec: 4127.55
//
Query:       EHU02318.1  [L=336]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-19   68.8   0.7    5.3e-19   67.8   0.7    1.6  1  LacI          Bacterial regulatory proteins, lacI family
    1.6e-12   47.5   0.0      2e-12   47.1   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.2e-08   35.5   0.0    2.5e-07   31.2   0.0    2.3  2  Peripla_BP_3  Periplasmic binding protein-like domain
    8.7e-08   32.0   0.0    1.1e-07   31.7   0.0    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.046   13.8   0.0    1.8  1  HTH_3         Helix-turn-helix


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.7   1.5e-22   5.3e-19       1      46 []       2      50 ..       2      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.5e-22
                -HHHHHHHCTS-HHHHHHHCTTS...SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk...erVseetrerVeaameelnYiPn 46
                +++++ArlAGVS +T+S+v+n+k   +rVs++t e+V+a+++e+nY+Pn
  EHU02318.1  2 KLDEIARLAGVSRTTASYVINGKarqYRVSDKTVEKVMAVVREHNYHPN 50
                589*********************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   5.5e-16     2e-12       2     213 ..      62     271 ..      61     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 5.5e-16
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliia.tsdtsfdditakaesgipvialedaidapdgvP 96 
                    ++glv+p+l++  +  + + +++ a++ g+++l+   ++++d + + i+ l+++++d++i+  ++ ++ +  ++  +  +p+ial++a d      
    EHU02318.1  62 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEmRCIEHLLQRQVDAIIVStSLPPEHPFYQRWINNPLPIIALDRALDRE-HFT 157
                   68*******************************9999999****99****************94555569999999999*************9.999 PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindea 191
                   +v+ +d   ++    +L +    + ++ +++    + +  r  Gf++a+++   e  ++ +   s ++++ a   ++ l+ h  P+  a+ + +   
    EHU02318.1 158 SVVGADQDDAYALAAELRQLKVSN-VLFMGALPELSVSFLRELGFREAWKGD--ERPIDFLYCNSFERTASAAVFEKYLQDHsmPD--ALFTTSFGL 249
                   999999999999999*********.9****999999**************99..668888888888888888888999*9999***..999999998 PP

                   HHHHHHHHHH.TT.--GGGEEEE CS
  Peripla_BP_1 192 alGavlalkk.eGrlkikeevds 213
                     G + +++k +Grl  + ++  
    EHU02318.1 250 LQGVMDVTLKrNGRLPSNLAI-A 271
                   888887765516778877777.3 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.064   2.3e+02       8      81 ..      60     124 ..      52     169 .. 0.72
   2 !   31.2   0.0   7.1e-11   2.5e-07       3     152 ..     173     316 ..     171     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.064
                   S--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEES CS
  Peripla_BP_3   8 Ghrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAviaa 81 
                   + r+i+++   +d ++++++++   +++ +++ g++l +    +d+p+++ +  + l l +++      +A+i+ 
    EHU02318.1  60 RTRSIGLVI--PDLENTSYTRIANYLERQARQRGYQLLIACS-EDQPDNEMRCIEHL-LqRQV------DAIIVS 124
                   478899999..5555677777777777777999999998855.55554444444433.32333......566664 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 7.1e-11
                   HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   3 hLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalreag 97 
                   +L +l+  ++ f g     ++s s +re gfr+a +    p +  ++++ + +a aa+ ++  l     ++  +P+A++ +s  l +gv+ +   ++
    EHU02318.1 173 ELRQLKVSNVLFMG--ALPELSVSFLRELGFREAWKGDERPIDFLYCNSFERTASAAVFEKY-L-----QDhsMPDALFTTSFGLLQGVMDVTLKRN 261
                   78899999999999..9999999************999988886666555555555555544.2.....22349*********************** PP

                   --TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S-- CS
  Peripla_BP_3  98 lrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappe 152
                    r P  l++  f d el+ ++  p+ +v q  ++++++++el+l+ l+++++p +
    EHU02318.1 262 GRLPSNLAIATFGDHELLDFLECPVLSVGQRHRDVAERVLELVLASLDEPRKPKP 316
                   **************9********************************77776655 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0     3e-11   1.1e-07       1     216 [.      64     272 ..      64     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3e-11
                   EEEEES-SSTC.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnp.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   ig+v++d +n+ + + + + le +a++ g++  + + +e +   +   ie +++++vd+iiv+   +++  p+ ++  ++  p++a d++  + +  
    EHU02318.1  64 IGLVIPDLENTsYTR-IANYLERQARQRGYQLLI-ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-HPFYQRWINNPLPIIALDRA-LDREHF 156
                   899********7777.**************9999.688888899*******************888854.48******************.****** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH..-T.TCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEE CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke..yp.gikivaevaganwdaekaqqalealltanp.ldgila 189
                   +++vg+d+ +a +l+ae+  ++l+    +v+ + + p  + + +r+ gfr++ k+   p ++ ++        +++ +    e++l+ ++  d+ ++
    EHU02318.1 157 TSVVGADQDDAYALAAEL--RQLKV--SNVLFMGALPELSVSFLRELGFREAWKGdeRPiDFLYCN-----SFERTASAAVFEKYLQDHSmPDALFT 244
                   ***********9999997..55553..58999999999*****************88888888887.....6999999999******88768***** PP

                   SSCCHHHCHHHHHHH.TTTTSTEEEEEE CS
  Peripla_BP_4 190 andgmaegalealea.aglagkvvvtgq 216
                   ++ g  +g+++ + + +g+ +  + ++ 
    EHU02318.1 245 TSFGLLQGVMDVTLKrNGRLPSNLAIAT 272
                   9999999999876554666555444444 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05     0.046      11      44 ..       2      38 ..       1      42 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHTSSHHHHHHHHTT...SSCSBHHHHHHH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG...ernPsletlkkl 44
                 + e+A+++Gvsr+t s  +nG   + + s +t++k+
  EHU02318.1  2 KLDEIARLAGVSRTTASYVINGkarQYRVSDKTVEKV 38
                5689******************877777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2471.40
//
Query:       EHU02319.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.6e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.8e-06   26.5   0.3    3.8e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.088   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU02319.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU02319.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU02319.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU02319.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU02319.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU02319.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.7e-09   3.8e-06       3      52 ..      75     124 ..      73     128 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU02319.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.7e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU02319.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************97 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU02319.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU02319.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU02319.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU02319.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU02319.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU02319.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU02319.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU02319.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU02319.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2488.04
//
Query:       EHU02320.1  [L=152]
Description: MraZ family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-44  149.7   0.2    1.9e-21   75.8   0.0    2.0  2  MraZ      MraZ protein, putative antitoxin-like


Domain annotation for each model (and alignments):
>> MraZ  MraZ protein, putative antitoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0     1e-25   1.9e-21       1      71 [.       1      75 [.       1      76 [. 0.99
   2 !   72.4   0.1   1.3e-24   2.3e-20       1      63 [.      77     139 ..      77     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1e-25
                CCTTEEEEEB-TTSEEE--CHHHHHTTSC....SEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CCCHHHCHHHH CS
        MraZ  1 mfagatevelDakGRlllPaklreeakle....kevvviGvsncLeiwpraeWekyeeelaeeslsekaerallr 71
                mf+gat v+lD+kGRl++P+++r+ +++e    ++++++  + cL+++ +  We +e++la++s++++ er+++r
  EHU02320.1  1 MFRGATLVNLDSKGRLAVPTRYRNLLNEEsqgqMVCTIDLHQPCLLLYTLPAWEIIEKKLASLSSMNPMERRVQR 75
                9************************************************************************99 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 1.3e-24
                 CCTTEEEEEB-TTSEEE--CHHHHHTTSCSEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CCC CS
        MraZ   1 mfagatevelDakGRlllPaklreeaklekevvviGvsncLeiwpraeWekyeeelaeeslse 63 
                 ++++a+e+++D +GRlll+++lr++a+l+kev+++G++n++e+w++++W ++++ ++++  s+
  EHU02320.1  77 LLGHASECQMDNAGRLLLANTLRQHANLSKEVMLVGQFNKFELWDEQTWYQQVRDDIDAEQSA 139
                 589**************************************************9985554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1233.53
//
Query:       EHU02321.1  [L=313]
Description: S-adenosyl-methyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-118  395.5   0.0   2.2e-118  395.3   0.0    1.0  1  Methyltransf_5   MraW methylase family
    0.00017   21.4   0.0      0.017   14.9   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
     0.0011   19.9   0.0     0.0047   17.9   0.0    2.0  2  Methyltransf_24  Methyltransferase domain
     0.0058   17.3   0.0       0.24   12.1   0.0    2.4  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.3   0.0  4.8e-122  2.2e-118       2     308 ..       5     310 ..       4     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 395.3 bits;  conditional E-value: 4.8e-122
                     XXX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TT.EEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT.TT-EE CS
  Methyltransf_5   2 leHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlsel.rligidrDksalarakerLkefekrltlvkgnfkelkealaean.vtkvd 94 
                     ++H++VLl+e+v++l++kedg+yiD+T+G+ggHs  +L ql ++ +li+idrD++a+a+a e    +  r+++v+g f++l+e++ae++ ++++d
      EHU02321.1   5 YKHTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSLLILAQLGANgKLIAIDRDPQAIAAAAE---IKDPRFSIVHGPFSALAEYVAERElAGQID 96 
                     79******************************************9***************99...45568*******************999*** PP

                     EEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---BHHHHHHHHHHHS CS
  Methyltransf_5  95 gillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiettkelaevikkvv 189
                     gillDLGvSs+qld+aerGFsf++d+pLDmRmd+++  +Aae+l + +e+++a +lk+ygee+fakria+aive+++ +p+++tkelaevi++++
      EHU02321.1  97 GILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGHSAAEWLMQAEEADIAFVLKTYGEERFAKRIARAIVERNRDQPMTRTKELAEVIAAAT 191
                     *********************************************************************************************** PP

                     -------..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT------------------....-EEEE CS
  Methyltransf_5 190 pakekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskkeevPaglpvaseelka....klkli 280
                     p k+k k  hpatr FQA+RI++N+Elee++++l+ a+++la++grl+visFhSledr+vk++++++s+ ++vP+glp+++++l+a    +lkl+
      EHU02321.1 192 PVKDKFK--HPATRSFQAIRIWINSELEEIDTALKGAVDVLAPQGRLSVISFHSLEDRLVKRFMRDQSRGPQVPHGLPMTEQQLNAlggrQLKLL 284
                     *****99..***************************************************************************99888899999 PP

                     E.E.E---HHHHHH-GGGTT-EEEEEEE CS
  Methyltransf_5 281 tkkpilpseeeikeNprsrsakLrviek 308
                     +k  ++p++ e+keNpr+rs+ Lr++e+
      EHU02321.1 285 GK--MVPGDTEVKENPRARSSVLRIAER 310
                     94..79********************98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.8e-06     0.017      15      49 ..      36      69 ..      27     109 .. 0.81
   2 !    4.4   0.0    0.0065        29      90     127 ..     219     257 ..     192     285 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-06
  Methyltransf_31 15 GeltfelaeelgpkaevvGiDiseeaielArenaq 49
                     G+ ++ la +lg +++++ iD++++ai  A e+ +
       EHU02321.1 36 GHSLLILA-QLGANGKLIAIDRDPQAIAAAAEIKD 69
                     67777888.9********************99865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0065
  Methyltransf_31  90 pdkileeiervlkpggilliedpr.llaelpakveeesk 127
                       d +l+++ +vl p+g+l + +++ l+++l + + +++ 
       EHU02321.1 219 IDTALKGAVDVLAPQGRLSVISFHsLEDRLVKRFMRDQS 257
                      5778999***************99444444465555555 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0047       4      89 ..      33     113 ..      24     124 .. 0.76
   2 ?   -0.8   0.0      0.71   3.2e+03      52      52 ..     191     191 ..     131     243 .. 0.47

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
  Methyltransf_24   4 GvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealasla....agsiDllfiDgghaaeavledle 89 
                      G   G  +l++l+ l +ng+  l+a+d dp   +a a a+e   d r+ +++++++++++ +a    ag+iD +++D g + +  l+d e
       EHU02321.1  33 G--RGGHSLLILAQLGANGK--LIAIDRDP---QAIAAAAE-IKDPRFSIVHGPFSALAEYVAerelAGQIDGILLDLG-VSSPQLDDAE 113
                      5..67778888888999985..********...64444444.66789********8888866666678*********99.5555555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.71
  Methyltransf_24  52 r 52 
                      +
       EHU02321.1 191 T 191
                      1 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.4e-05      0.24       6      59 ..      32      83 ..      28     119 .. 0.79
   2 ?    3.0   0.0     0.037   1.7e+02      61      97 .]     201     234 ..     158     234 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
                     -TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS CS
  Methyltransf_25  6 cGtGrltlalakrlg.kakvtgvDiseemleaareraeeeglnvefvqgdaedlp 59
                      G+G ++l ++++lg ++k++++D ++++++aa+e     ++++++v+g +++l 
       EHU02321.1 32 FGRGGHSLLILAQLGaNGKLIAIDRDPQAIAAAAEIK---DPRFSIVHGPFSALA 83
                     68899888888888669**************998876...578888888887775 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.037
                      STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  61 edgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      + +sf ++ ++ +    + e++++alk + +vL p+G
       EHU02321.1 201 ATRSFQAIRIWINS---ELEEIDTALKGAVDVLAPQG 234
                      55688888887553...446899************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2520.02
//
Query:       EHU02322.1  [L=106]
Description: FtsL family cell division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-35  120.0   1.3    3.5e-35  119.9   1.3    1.0  1  FtsL      Cell division protein FtsL
     0.0086   15.8   0.5      0.011   15.4   0.5    1.1  1  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   1.3   3.9e-39   3.5e-35       2      96 ..      10     104 ..       9     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 3.9e-39
        FtsL   2 skiilkdllsvgkvlllllllvlvsavavvlithqtRqlvselekllserdkLeeewrnLlLEestlsahsrvesiAreqLkMkrpspeeeviis 96 
                 + +i  d+++ gk+ +lll++vlvsav vv++th+tR l++++e+l+ erd+L++ewrnL+LEe++l++hsrve+iA+e+L+M++++p++e+i+ 
  EHU02322.1  10 PAVIAGDIMRKGKLPFLLLIAVLVSAVLVVTTTHKTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVV 104
                 568999**************************************************************************************996 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   1.3e-06     0.011       1      67 [.      27      92 ..      27      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-06
                XXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXX CS
       DivIC  1 llllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselgl 67
                ll+++l+++++++ + ++ + l +++++l  e ++l  e ++L  e + L  d +++e++A ++l++
  EHU02322.1 27 LLIAVLVSAVLVVTTTHKTRLLTAQREQLVLERDALDIEWRNLILEENAL-GDHSRVERIATEKLQM 92
                78999*********************************************.9*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 854.78
//
Query:       EHU02323.1  [L=588]
Description: transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-81  272.6   0.0      5e-81  272.3   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    1.3e-19   71.3   0.0    4.7e-18   66.2   0.0    2.3  1  PBP_dimer       Penicillin-binding Protein dimerisation domai
  ------ inclusion threshold ------
      0.066   12.6   0.0       0.11   11.8   0.0    1.3  1  DUF1616         Protein of unknown function (DUF1616)


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.3   0.0   8.3e-85     5e-81       1     305 [.     260     554 ..     260     555 .. 0.95

  Alignments for each domain:
  == domain 1  score: 272.3 bits;  conditional E-value: 8.3e-85
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-.SSSS CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdn.kgse 93 
                     g+av++d +tgevlama++p y+pn+  + +++ ++nra+++ +ePGSt+K++++++al++gv+k++++l++ ++++      +++e+++ ++++
      EHU02323.1 260 GTAVLVDVNTGEVLAMANSPAYNPNNLSDtPKDLMRNRAITDIFEPGSTVKPMVVMTALQRGVVKENSVLNTVPYRV------NGHEIKDvARYN 348
                     79***************************999******************************************984......456666655566 PP

                     EEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--S.SH..HHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE- CS
  Transpeptidase  94 gitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptr.kw..legatisfgiGltvtplqlaqayaaiangGklvk 184
                     ++tl+ +l+kSsn+++++la +++ + l +++++fglG++t+++l ges+G +p++ +w  +e+at+sfg+Gl vtplqla++ya+i + G+ ++
      EHU02323.1 349 ELTLTGVLQKSSNVGVSRLALAMPSSALVETYSRFGLGKPTNLGLVGESSGlYPKKqRWsdIERATFSFGYGLMVTPLQLARVYATIGSFGIARP 443
                     99*************************************************8888855699********************************** PP

                     -BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SE CS
  Transpeptidase 185 PhlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpky 279
                     ++++          kv+p++ +++++ +  +++v +++++v+  g g ++aa++gy+va KTGTA+++g++g+  + +++i+  +g+apa+ p++
      EHU02323.1 444 LSIT----------KVDPPVGGERVFPEALVKTVVHMMESVALPGGGGVKAAIKGYRVAIKTGTAKKVGPDGR--YVNKYIAYTAGVAPASRPRF 526
                     ****..........7******************************************************7766..46689*************** PP

                     EEEEEECTCS..SSSSCCHHHHHHHHHH CS
  Transpeptidase 280 avavlieqpk..eaaggkaaapiakkil 305
                     a++v+i++p+  +++gg+++ap++ +i+
      EHU02323.1 527 ALVVVINDPQagKYYGGAVSAPVFGAIM 554
                     ***************************9 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   7.9e-22   4.7e-18       3     178 ..      68     220 ..      66     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 7.9e-22
                 EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT-E CS
   PBP_dimer   3 papRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGin 101
                 p +RG I Dr gr+LA ++p+ ++ ++p++l ++   + ++   + l++  ++  ++l     + n + +  ++ +a++++ +  +++k+ +  lpGi+
  EHU02323.1  68 PTSRGMISDRGGRPLAVSVPVNAIWADPKELHDAGGVT-LDSRWRALSDALSVPIDQLAA---RVNANPKGRFIYLARQVNPAIGEYVKKLK--LPGIH 160
                 678******************************99875.566566665444455455555...8888999*****************99765..99*** PP

                 EEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCEE CS
   PBP_dimer 102 ievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrilee 178
                  ++e++RyYp g++ +h++G ++ i                d  G +G+Ek+++++L G+ G+r+v++d  Gr++e 
  EHU02323.1 161 LREESRRYYPAGQVTSHLIGFTN-I----------------DGQGIEGIEKSFDKWLTGEPGERTVRKDRYGRVIED 220
                 ********************875.4................689******************************986 PP

>> DUF1616  Protein of unknown function (DUF1616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.11      43      70 ..     400     427 ..     397     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
     DUF1616  43 LFPekrdidgieRlaLSfglSiaivpli 70 
                 L+P+k++ + ieR++ Sfg  ++++pl 
  EHU02323.1 400 LYPKKQRWSDIERATFSFGYGLMVTPLQ 427
                 9*************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4883.97
//
Query:       EHU02324.1  [L=495]
Description: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-51  173.4   0.0    7.3e-51  172.9   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    4.4e-26   91.0   0.0    2.3e-25   88.7   0.0    2.2  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    5.5e-14   52.3   1.0    1.6e-13   50.8   0.4    2.1  2  Mur_ligase    Mur ligase family, catalytic domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.0   1.2e-54   7.3e-51       1     191 [.     114     318 ..     114     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 1.2e-54
                   EESSS-HHHHHHHHHHHHHCT...EEEEETTC............SS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TS CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka...gkvigtvg............ttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnisp 82 
                   +TGtnGKTTt++l+a++ e +    +v+gtvg            tt +++++++tl e++ k+a + ++E+sshgl+++r+++ l++++av+tn+s+
    EHU02324.1 114 ITGTNGKTTTSQLLAQWAELMgetSAVMGTVGnglvgqlvpaenTTGSAVDVQHTLDELASKGASLTAMEISSHGLVQHRVAA-LPFAAAVFTNLSR 209
                   8********************77666888888***************************************************.9************ PP

                   TTHHHHSSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTS......ECEEEEEEEEETTEEEEEEEEETTEEEEEE CS
  Mur_ligase_M  83 dHldfhgtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekea......edlraknieeksegteiellevkggeleie 173
                   dHld+hg++++y  aK+ lf++++  g+a++nadd++++++ ++l +a    v +++e++       ++lra++++++++g +i++  +++g+ e++
    EHU02324.1 210 DHLDYHGDMQQYESAKWLLFSEHQV-GVAILNADDEVGRRWLANLPDA----VAVSMENNLqpgchgRWLRATEVNYHDNGAHIRFR-SSWGDGELD 300
                   *********************9995.7*********888888887776....67777776667889999***************888.89******* PP

                   ESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M 174 ipllGkhnvyNalaaiaa 191
                   ++l+G +nv+N+l+a+a+
    EHU02324.1 301 SRLMGAFNVSNVLLALAT 318
                   ***************996 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   3.9e-29   2.3e-25       1      90 [.     339     424 ..     339     425 .. 0.96
   2 ?   -1.6   0.0      0.55   3.3e+03      30      52 ..     448     469 ..     443     477 .. 0.66

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 3.9e-29
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHHH CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsiaa 90 
                   v gR+ev++  +++tv++Dyah+pd+l++al+a+r +  +++l+++fg+gg+   r++ +++++g++a+++ad++v+++d+pr+ed++a+
    EHU02324.1 339 VTGRMEVFTAPGKPTVVVDYAHTPDALEKALAAARLH-CKGKLWCLFGCGGD---RDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAI 424
                   679*******************************887.68************...*******************************9876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.55
                   HHHHHHHHSSSSEEEEEEEESTT CS
  Mur_ligase_C  30 alkalreiapdkrlilvfgpgge 52 
                   + +++ +  p   ++lv+g g e
    EHU02324.1 448 VTSTIMQAQP-DDIVLVAGKGHE 469
                   5555555544.588888887555 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.4   2.7e-17   1.6e-13       5      88 .]      25     102 ..      22     102 .. 0.94
   2 ?   -3.1   0.0       1.7     1e+04      27      42 ..     159     179 ..     154     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.7e-17
                 ESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHHHCCE CS
  Mur_ligase   5 igidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLaelaarfy 88 
                 +++d+r   ag+lf+a+ G++vdG++fi+++ia+G+aav++++++        +d +  e  ++p+i++ ++++ L++la rfy
  EHU02324.1  25 MTLDSRVAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEG------EASDGEIREMHGVPVIYLAQLPQRLSALAGRFY 102
                 689***************************************999......566688888999******************998 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                 EEEESSHC.....HHHTT-EE CS
  Mur_ligase  27 dGsdfies.....lialGaaa 42 
                 +Gs +  +     l  +Ga++
  EHU02324.1 159 TGSAVDVQhtldeLASKGASL 179
                 555555555566677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3893.59
//
Query:       EHU02325.1  [L=452]
Description: UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-48  165.1   0.0    4.5e-48  163.8   0.0    1.7  2  Mur_ligase_M  Mur ligase middle domain
    3.3e-16   59.3   0.1    2.9e-14   53.1   0.0    2.6  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    5.6e-10   39.4   0.0    1.8e-09   37.8   0.0    1.9  1  Mur_ligase    Mur ligase family, catalytic domain
  ------ inclusion threshold ------
       0.06   13.1   0.0       0.13   12.0   0.0    1.6  1  LpxD          UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyl


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0     1e-51   4.5e-48       2     192 .]     106     293 ..     105     293 .. 0.95
   2 ?   -2.4   0.0      0.87   3.9e+03       7      29 ..     410     432 ..     408     450 .. 0.69

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 1e-51
                   ESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHHH CS
  Mur_ligase_M   2 TGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyaea 97 
                   TG++GKT+++e++aail++ g+++ t+g++nn+ g+p tl++++  e++yav+E+++++ ge +   +l++p++a+++n+  +Hl+ +g+le +a+a
    EHU02325.1 106 TGSSGKTSVKEMTAAILRQCGETLHTAGNLNNDFGVPMTLLRLTP-EHQYAVIELGANHQGEiAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKA 201
                   *********************************************.*****************999999**************************** PP

                   HHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTC.EEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHHH CS
  Mur_ligase_M  98 Kaelferlkeegiavinaddpyakelikklkkakvk.vvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaaa 192
                   K e+f +l+++g+a++nad +   ++ ++ ++ + k v++f+ ++ + d+ a++i+  ++gt++ +++++ g+++i +pl+G+hn++Nalaa+a+a
    EHU02325.1 202 KGEIFYGLPAKGTAILNADSN---DWPRWQENLHGKtVWRFSPQAADCDFGARDIRIRQDGTHF-VMHTPRGDIDIILPLPGRHNIANALAAAALA 293
                   *********************...6666666666666**********99***************.6669************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.87
                   HHHHHHHHHHHHHCTEEEEETTC CS
  Mur_ligase_M   7 KTTtteliaailekagkvigtvg 29 
                   KT  te ++++l+++ +++ +++
    EHU02325.1 410 KTALTERLRQLLSEHKEMTVLIK 432
                   88888899999988866666655 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   6.4e-18   2.9e-14       1      82 [.     313     394 ..     313     403 .. 0.92
   2 ?    3.7   0.0     0.016        73      51      85 ..     404     439 ..     400     444 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 6.4e-18
                   CTTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEEESS- CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvvlgdyp 82 
                   v+gRl +v+ +d+ +++dD y++n++s+ aa ++l e+ p + +++v+g+++elg+ ++++h e+g +a+a+ ++ ++ +g+ +
    EHU02325.1 313 VPGRLFPVRLSDHQLLLDDsYNANVGSMVAAAQVLSEM-P-GYRVMVVGDMAELGDESEQLHREVGLAAKAAGVDrVLSTGQFS 394
                   79*********************************999.5.899***************************9999888887765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.016
                   TT.CCSCHCTHHHHHHHHCCHSSE.EEEEESS-TTS CS
  Mur_ligase_C  51 gelgertrtfhdefgrlasalads.lvvlgdyprae 85 
                   ge +++  ++ +++ +l+s+++++ +++ g  ++a 
    EHU02325.1 404 GEHFSDKTALTERLRQLLSEHKEMtVLIKGSRSAAM 439
                   566999******************666666656655 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     4e-13   1.8e-09       3      76 ..      25      83 ..      23      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4e-13
                EEESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEH CS
  Mur_ligase  3 hfigidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesr 76
                  +++d r+++a +lf+a+ G+++d +df+e++ia+Ga+a+++++                  + +p++ v+++
  EHU02325.1 25 NTVTTDTRKVTADSLFVAIVGERFDAHDFAEDAIAKGAKALLVSKHL---------------PVSVPQVVVKDT 83
                5699***************************************9887...............344444444444 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     3e-05      0.13      26      70 .]      53      93 ..      48      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                CGGGCCC---SEEEEEHHHHCCHTTSCS.EESS-HHHHHHHHHHH CS
        LpxD 26 ylkqlattkAgavivppdlaealpanaalivvenPylafakllql 70
                +++ + +  A+a++v+++l  ++p+    +vv++ + af kl+ +
  EHU02325.1 53 FAEDAIAKGAKALLVSKHLPVSVPQ----VVVKDTRIAFGKLASW 93
                677777889*******888877775....*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3555.37
//
Query:       EHU02326.1  [L=360]
Description: phospho-N-acetylmuramoyl-pentapeptide transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-34  116.7  15.9    9.1e-34  116.7  15.9    2.1  3  Glycos_transf_4  Glycosyl transferase family 4
      1e-05   24.8   3.3      1e-05   24.8   3.3    3.0  3  MraY_sig1        Phospho-N-acetylmuramoyl-pentapeptide-transf


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.23     2e+03      28      45 ..      25      48 ..      11      95 .. 0.50
   2 !  116.7  15.9     1e-37   9.1e-34       2     159 ..      99     284 ..      98     285 .. 0.92
   3 ?   -2.5   0.1      0.51   4.5e+03      58      58 ..     339     339 ..     289     356 .. 0.47

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.23
  Glycos_transf_4 28 Klilqilaalililtld......l 45
                     + i+++l+al++ l+++      l
       EHU02326.1 25 RAIVSLLTALFISLWMGprliawL 48
                     555555555555554444444331 PP

  == domain 2  score: 116.7 bits;  conditional E-value: 1e-37
  Glycos_transf_4   2 llllltillilllGflDDv........lglkarlKlilqilaalililtld.....lslttlgllltqvlielglilavlltllvivgvtNavN 82 
                      +++l++++ ++++Gf+DD+         gl ar+K ++  +++l ++++l+     + +t+l +++++ ++    +++++l+++vivg+ NavN
       EHU02326.1  99 WCVLVVLVGFGVIGFVDDYrkvvrkdtMGLIARWKYFWMSVISLGVAFALYlagkdTPATELVVPFFKDVMPQLGLFYIVLAYFVIVGTGNAVN 192
                      789999************9888888888****************999999988888666667777665555555599***************** PP

  Glycos_transf_4  83 liDGldGlaagvsiiialalvvla...............avdgrsellllalallgallGfllfNrypAkvFmGDsgslflGlvlavlailg 159
                      l+DGldGla++ ++++a+ ++++a               ++++  el+++++a++ga lGfl+fN+ypA+vFmGD+gsl+lG+ l+++a+l+
       EHU02326.1 193 LTDGLDGLAIMPTVFVAAGFALVAwatgnvkfadylhipYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGTIAVLL 284
                      ********************999999**********999999**********************************************9975 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.51
  Glycos_transf_4  58 l 58 
                      +
       EHU02326.1 339 I 339
                      1 PP

>> MraY_sig1  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   3.3   1.1e-09     1e-05       1      13 []      68      80 ..      68      80 .. 0.97
   2 ?   -3.7   1.0       1.2   1.1e+04       6       8 ..     125     127 ..     125     127 .. 0.95
   3 ?    0.7   1.5     0.049   4.4e+02       7      11 ..     293     297 ..     293     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.1e-09
   MraY_sig1  1 KkGTPTMGGvlIi 13
                K+GTPTMGG++I+
  EHU02326.1 68 KRGTPTMGGIMIL 80
                9***********7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
   MraY_sig1   6 TMG 8  
                 TMG
  EHU02326.1 125 TMG 127
                 9*9 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.049
   MraY_sig1   7 MGGvl 11 
                 MGGv+
  EHU02326.1 293 MGGVF 297
                 ****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2867.62
//
Query:       EHU02327.1  [L=438]
Description: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-29  102.1   0.0    6.3e-29  101.4   0.0    1.4  1  Mur_ligase_M   Mur ligase middle domain
      5e-11   42.7   0.0    4.4e-10   39.7   0.0    2.5  3  Mur_ligase_C   Mur ligase family, glutamate ligase domain
  ------ inclusion threshold ------
      0.024   15.1   0.0      0.075   13.5   0.0    1.9  2  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0     1e-32   6.3e-29       1     192 []     110     280 ..     110     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 1e-32
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnispdHldfh.gtlenyae 96 
                   +TG+nGK+T+t+l+ ++ ++ag+ +g+ g+    iglp++ +  +   a+++vlE+ss +l  +  ++ lk ++a+i+n+++dH+d++   +++y +
    EHU02327.1 110 ITGSNGKSTVTTLVGEMAKAAGWQVGVGGN----IGLPALSLLKA--PAQLYVLELSSFQL--ETTYS-LKAAAATILNVTEDHMDRYpLGMQQYRA 197
                   8*****************************....****9985444..59**********44..44555.778**************99889****** PP

                   HHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEE..EEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  97 aKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggele..ieipllGkhnvyNalaaiaa 191
                   aK +++e+ +   + v+nadd     ++  ++ a+++ v+fg++  +        + ++++ ++ l   kg+++    e+ l+G+hn  Nalaa+a+
    EHU02327.1 198 AKLRIYENAQ---VCVVNADDG----MTMPVRGADARCVSFGIDIGDY-------HLNKQQGSVWLR-AKGEKVLntDEMTLVGQHNYTNALAALAL 279
                   *******988...99*******....55556777889********982.......333333444333.3333333359*****************98 PP

                   H CS
  Mur_ligase_M 192 a 192
                   a
    EHU02327.1 280 A 280
                   6 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.95   5.7e+03      40      70 ..     104     129 ..      85     133 .. 0.68
   2 !   39.7   0.0   7.4e-14   4.4e-10       2      79 ..     301     371 ..     300     380 .. 0.88
   3 ?   -1.3   0.0      0.45   2.7e+03      56      72 ..     387     403 ..     383     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.95
                   SSEEEEEEEESTT.CCSCHCTHHHHHHHHCC CS
  Mur_ligase_C  40 dkrlilvfgpggelgertrtfhdefgrlasa 70 
                   +  ++++ g+ g   + t t   ++g++a+a
    EHU02327.1 104 QAPIVAITGSNG---KSTVT--TLVGEMAKA 129
                   567788888733...36666..667776665 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 7.4e-14
                   TTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEE CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlg 79 
                    +R+++v+e++gv++i+D +a+n++s++aalk+l ++  d+ l+l++g g+    ++++f ++ ++l  +  ++l+ +g
    EHU02327.1 301 AHRFQLVHESRGVRWINDsKATNVGSTEAALKGL-QV--DGTLWLLLG-GDG---KSADFSPLQPYLQGD-RIRLFCFG 371
                   59********************************.33..79*******.788...9****9999999887.77777655 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.45
                   SCHCTHHHHHHHHCCHS CS
  Mur_ligase_C  56 rtrtfhdefgrlasala 72 
                   rt+t+++ ++++a+++ 
    EHU02327.1 387 RTETLQEAMAQIAKQVQ 403
                   89999999999999864 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05     0.075       3      82 ..       2      86 ..       1      93 [. 0.78
   2 ?   -2.6   0.0       1.3   7.8e+03      67      67 ..     193     193 ..     144     216 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
  NAD_binding_7  3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapev.keeleelvklaeeel....ekdlegadlviaatddrelneriaeaa 82
                    d +g+kv+++G G  +++ v  ++++g +  v++ +v  + l++l +  e+++    +++l  adl++a +  +    +++eaa
     EHU02327.1  2 ADYRGRKVVIIGLGLTGLSCVDFFIAQGVTPRVMDTRVsPPGLDKLPEQVERYVgglnRDWLLAADLIVASPGIALAHPALCEAA 86
                   5789*****************************999974233445555556666666789999******9887666666666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
  NAD_binding_7  67 a 67 
                     
     EHU02327.1 193 Q 193
                    1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3277.32
//
Query:       EHU02328.1  [L=404]
Description: cell division membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.8e-125  416.8  21.1     8e-125  416.5  21.1    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein
  ------ inclusion threshold ------
        2.6    8.1   8.7       0.49   10.4   3.4    2.5  2  DUF1422          Protein of unknown function (DUF1422)


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.5  21.1  8.9e-129    8e-125       2     358 ..      37     392 ..      36     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 416.5 bits;  conditional E-value: 8.9e-129
  FTSW_RODA_SPOVE   2 allllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvplgssanGAkrW 95 
                      +ll+l+l l++ +G+vm++sas+   ++l +d+f++++r+ +y++l++ +++++lr+p+ f+++++ ++l++s+++L++v v +gss+nGA rW
       EHU02328.1  37 TLLWLTLGLAA-IGFVMVTSASMPVGQRLNDDPFYFAKRDAFYIALAFGIALVTLRVPMDFWQRYSNVMLMASVVMLLIVLV-VGSSVNGASRW 128
                      67888888888.**********************************************************************.*********** PP

  FTSW_RODA_SPOVE  96 irlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklilaivlalilv 189
                      i lg ++iqP+E++k+ l+++lA++l++k +ev+++ ++++++++++++++vl+l+qpdlgt+v+l++++l++lfl+g++l+++lai++   ++
       EHU02328.1 129 IALGPLRIQPAELSKLTLFCYLASYLVRKVEEVRNNFWGFCKPMGVMVVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFLAIIG--SGM 220
                      *****************************************************************************************..89* PP

  FTSW_RODA_SPOVE 190 iaivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqqkleyLPeahtDfIfavigEelGlvGvllllllfflliv 283
                       a+vlli++e+y+++rvts+++p++dp gsgYq++qsl+A+g+G+++G+Glgns+qkleyLPeahtDfIf++igEelG++Gv+l+ll++f++++
       EHU02328.1 221 FAVVLLIIAEPYRMRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEFWGQGLGNSVQKLEYLPEAHTDFIFSIIGEELGYIGVVLALLMVFFVAF 314
                      ********************************************************************************************** PP

  FTSW_RODA_SPOVE 284 rglriark...akdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisreek 358
                      r++ i r+   +++rf+ +la++i++++++q+++n+g+++G+lP++GltlP++SyGGsSll+++++i  ll+i++e++
       EHU02328.1 315 RAMSIGRRaleLDQRFSGFLACSIGVWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIVFLLRIDYETR 392
                      *****9998889*************************************************************99876 PP

>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.4   5.4e-05      0.49       9     110 ..     111     210 ..     104     214 .. 0.92
   2 ?   -1.2   0.2      0.22     2e+03      92     108 ..     299     315 ..     289     321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.4e-05
     DUF1422   9 tllLaliaGlslngtlsalfsslvpfsifplialvlavyclyqrYlnksleeglPllalacfllGvlgysalvraeyPeiGsnflsvvllvvlvlwigl 107
                  ll+ l++G s+ng+  +++    p  i p     l+++c    Yl +++ee        c  +Gv++  a++    P++G+  +  v ++++++  g 
  EHU02328.1 111 MLLIVLVVGSSVNGASRWIAL--GPLRIQPAELSKLTLFCYLASYLVRKVEEVRNNFWGFCKPMGVMVVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGA 207
                 58899**********999865..5888999999999***********************************************************9999 PP

     DUF1422 108 klk 110
                 kl 
  EHU02328.1 208 KLW 210
                 985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.22
     DUF1422  92 flsvvllvvlvlwiglk 108
                 ++ vvl++++v++++++
  EHU02328.1 299 YIGVVLALLMVFFVAFR 315
                 78899999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 2928.75
//
Query:       EHU02329.1  [L=352]
Description: UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-48  162.8   0.1    1.1e-47  161.5   0.1    1.7  2  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    1.3e-39  135.8   0.0    1.9e-39  135.4   0.0    1.1  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    6.5e-09   36.0   0.2    6.2e-08   32.8   0.1    2.2  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.3e-07   32.1   0.1    1.3e-05   25.7   0.0    2.6  2  Glyco_trans_1_4  Glycosyl transferases group 1
    1.2e-05   25.8   5.4    9.3e-05   22.9   5.2    2.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
      0.041   13.4   0.0        0.7    9.4   0.0    2.2  2  Glycos_transf_1  Glycosyl transferases group 1
      0.067   13.2   0.0       0.12   12.4   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.1   4.5e-51   1.1e-47       2     138 ..       7     143 ..       6     144 .. 0.99
   2 ?   -2.4   0.0       1.8   4.5e+03      64     101 ..     299     336 ..     262     341 .. 0.68

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 4.5e-51
                      EEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---GHCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC CS
  Glyco_transf_28   2 vllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiageklrrklspknlkeilkvlkavvkakkilkeakpdavvgt 95 
                      ++++gGTgGhvfP lA+a++L+++g++Vr+lgt +++e  lv+++g+ +  i +++lr+k+s+  l ++ ++++a+++a+ki+k  kpd+v+g+
       EHU02329.1   7 MVMAGGTGGHVFPGLAVAHHLEAQGWQVRWLGTADRMEADLVPKHGIDIDFIRISGLRGKGSKALLLAPVRIFNAWRQARKIIKAWKPDVVLGM 100
                      799******************************************************************************************* PP

                      CCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCC CS
  Glyco_transf_28  96 ggyvslpaviaaplaripviihEqnaipglanktlsrtatkva 138
                      ggyvs+p ++aa+++++pv++hEqn+i+gl+nk+l+++atkv+
       EHU02329.1 101 GGYVSGPGGLAAWSCGVPVVLHEQNGIAGLTNKWLAKIATKVM 143
                      *****************************************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                      HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH CS
  Glyco_transf_28  64 pknlkeilkvlkavvkakkilkeakpdavvgtggyvsl 101
                       k + +++  ++av ++ +++ + ++ a+++++  v++
       EHU02329.1 299 AKIFEQPQFTAEAVAETLRHWDRPTLLAMAEKAHAVAV 336
                      55556666666666777777766666666666655555 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0   7.2e-43   1.9e-39       2     166 ..     183     342 ..     182     344 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 7.2e-43
                      EEEEE-SSSHHHHHCCCTSHHHHHHHHHHHHCHHHCCT-EEC---STT-TTTT.CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT-- CS
  Glyco_tran_28_C   2 ilVtGGSqgaeaLnelvlselkllelksrelqvlhqtGkreleevkikveelt.lkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkp 94 
                      ilV+GGSqga++Ln++ ++++++l ++   + + hqtGk+ l+ev++ +++ + ++++v+efid+ma+a+++ad+vI+R+Ga t+ E++a+g+p
       EHU02329.1 183 ILVIGGSQGARILNQTLPQIAARLGET---ITLWHQTGKGALQEVQQAYQQAGqPQHKVTEFIDDMAAAYAWADVVICRSGALTVSEIAAAGLP 273
                      99************************9...9*****************999999**************************************** PP

                      EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHHHHH CS
  Glyco_tran_28_C  95 lIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadlaer 166
                      +I+vp+++  + +q+ Na  le agaa ++eq ++t e ++e+l++   + l  a +++++ a +++d+ er
       EHU02329.1 274 AIFVPFQH-KDRQQYWNALPLEGAGAAKIFEQPQFTAEAVAETLRHWDRPTLL-A-MAEKAHAVAVPDATER 342
                      ********.56*************************************99984.3.3333345777777765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   2.4e-11   6.2e-08      10     107 ..      22     127 ..      13     174 .. 0.75
   2 ?    0.7   0.0      0.18   4.5e+02     127     143 ..     245     261 ..     202     277 .. 0.66

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 2.4e-11
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeev.....elvvrvprvplpllk....rllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                      +a++L ++G++V+ +  +d+ +++  +     ++++r+ + +  ++k     + r++ ++r++r+++k++kpDvv   + +  g ++la++   
      EHU02329.1  22 AVAHHLEAQGWQVRWLGTADRMEADLVPkhgidIDFIRISGLRGKGSKalllAPVRIFNAWRQARKIIKAWKPDVVLGMGGYVSGPGGLAAWS-C 115
                     689*************878777777777677884444444444444441111444678888999****************************9.* PP

  Glyco_transf_4  96 giplVltvHgly 107
                     g+p+Vl+  +  
      EHU02329.1 116 GVPVVLHEQNGI 127
                     *****9877766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
  Glyco_transf_4 127 errllrradrviavSea 143
                     ++ ++ +ad vi+ S a
      EHU02329.1 245 MAAAYAWADVVICRSGA 261
                     44559999999998876 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.026        67      88     107 ..     110     129 ..     108     148 .. 0.77
   2 !   25.7   0.0     5e-09   1.3e-05      15     102 ..     190     279 ..     180     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.026
                      HHHHHTT-EEEE-TGGGTTT CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiae 107
                      l a ++g+pvV  +  gia 
       EHU02329.1 110 LAAWSCGVPVVLHEQNGIAG 129
                      6799********99988776 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 5e-09
                      GTHHHHHHHHHHHH.H..H.EE.EEEES---..HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TG CS
  Glyco_trans_1_4  15 kgvdllleavpllrkk..d.vr.lvivGdgprpeeleelaa..gleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVatdv 102
                      +g+++l + +p+++++  + ++  +  G+g   +e+++  +  g +++ ++t f++d+a+++a adv+++ s    l++ E +aaglp +  + 
       EHU02329.1 190 QGARILNQTLPQIAARlgEtITlWHQTGKGAL-QEVQQAYQqaG-QPQHKVTEFIDDMAAAYAWADVVICRSG--ALTVSEIAAAGLPAIFVPF 279
                      6889999999****997547551567787764.46775444445.699**********************994..7*************98765 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   5.2   3.6e-08   9.3e-05       9     115 ..      22     135 ..      14     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.6e-08
  Glyco_trans_4_4   9 elaraLaarGheVtvltpapapgap..eleedgvrvhrlpvprrp.s......pladlaalralrrllrqrrerpdvvhahsptaglaarlarr 93 
                      ++a++L+a+G++V+ l +a++ +a+  + ++  +  +r+   r+  s      p++   a r++r ++  ++++pdvv   + + ++++ la++
       EHU02329.1  22 AVAHHLEAQGWQVRWLGTADRMEADlvPKHGIDIDFIRISGLRGKgSkalllaPVRIFNAWRQARKII--KAWKPDVVLGMGGYVSGPGGLAAW 113
                      6899**********998777666552233344555667654444313333222444444667888888..************655555666666 PP

  Glyco_trans_4_4  94 rrgiplvvtlhglllrrgsgav 115
                        g+p+v++ ++      + ++
       EHU02329.1 114 SCGVPVVLHEQNGIAGLTNKWL 135
                      *********9853322223343 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.071   1.8e+02     112     130 ..     112     130 ..     110     143 .. 0.82
   2 ?    9.4   0.0   0.00027       0.7      61     122 ..     222     277 ..     173     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.071
                      HHHTT--EEEETTTTHCHH CS
  Glycos_transf_1 112 Amaaglpviasnaggpaev 130
                      A ++g+pv+ +   g+a +
       EHU02329.1 112 AWSCGVPVVLHEQNGIAGL 130
                      779********98887755 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00027
                      HHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEE CS
  Glycos_transf_1  61 elkklaeelelsdnviflgevsredleellknadifvlpsisEgfGivllEAmaaglpvias 122
                      +  ++a +   + +++++ +++  d+ + +  ad++++     + ++++ E  aaglp+i +
       EHU02329.1 222 QEVQQAYQQAGQPQHKVTEFID--DMAAAYAWADVVICR----SGALTVSEIAAAGLPAIFV 277
                      4445566666669*********..***************....899************9976 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-05      0.12      16     104 ..      23     121 ..       8     142 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
  Glyco_trans_4_2  16 lakeLakrgyeVhvitp.kkgakdele.aegihvhrlkvd......rkg....pleylk.afklkklikkikPDvvhahyakpygllgslaarl 96 
                      +a+ L ++g++V  +   + ++  +l+   gi +  ++++      +k     p+  ++  ++ +k+ik+ kPDvv  +     g  g+laa  
       EHU02329.1  23 VAHHLEAQGWQVRWLGTaDRME-ADLVpKHGIDIDFIRISglrgkgSKAlllaPVRIFNaWRQARKIIKAWKPDVVLGMGGYVSG-PGGLAAWS 114
                      6777888888888776634443.33331445544444433444444444556677777734799************988744334.47899999 PP

  Glyco_trans_4_2  97 sgvipvvl 104
                      +g +pvvl
       EHU02329.1 115 CG-VPVVL 121
                      99.88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2739.48
//
Query:       EHU02330.1  [L=491]
Description: UDP-N-acetylmuramate:L-alanine ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-30  105.5   0.9    2.5e-30  104.6   0.2    1.9  2  Mur_ligase    Mur ligase family, catalytic domain
    1.2e-27   97.2   0.0    1.6e-27   96.7   0.0    1.2  1  Mur_ligase_M  Mur ligase middle domain
    1.5e-20   73.2   0.0    7.5e-20   71.0   0.0    2.2  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.2   4.2e-34   2.5e-30       1      86 [.      21     118 ..      21     120 .. 0.98
   2 ?   -2.6   0.0       1.2   7.3e+03      56      56 ..     288     288 ..     257     319 .. 0.53

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 4.2e-34
                 EEEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG......EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHHHHHHC CS
  Mur_ligase   1 eihfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani......vvss.iskdnpeleaakepgipvesraeaLaelaar 86 
                 +ihf+gi+g+gm+++a++la++Gy+++Gsd++++     li+lGa++++ h+++n+      vvss +s+dnpel+aa+e++ipv++rae+Lael++ 
  EHU02330.1  21 HIHFVGIGGAGMGGIAEVLANEGYHISGSDLAPNpvtqnLINLGATIYFNHRPENVtdasvvVVSSaVSQDNPELVAAREQRIPVIRRAEMLAELMRF 118
                 8*************************************************************9999******************************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 S CS
  Mur_ligase  56 i 56 
                 +
  EHU02330.1 288 A 288
                 1 PP

>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   2.7e-31   1.6e-27       1     192 []     124     304 ..     124     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2.7e-31
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCH.CBESEEEE---TSTTHHHH.SSHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegl.lkpdvavitnispdHldfh.gtleny 94 
                   ++Gt+GKTTtt ++ +i+++     +++ g + ++ g+++ l        +y++ E+ ++       + l l+p vav+tni+ dH+d + g++en 
    EHU02330.1 124 IAGTHGKTTTTAMVSSIYAEGgLDPTFVNGGLVKAAGTHARL-----GSSRYLIAEADES-----DASFLhLQPMVAVVTNIEADHMDTYqGDFENL 210
                   89****************9995669*****999999999988.....56789********.....5566568****************888****** PP

                   HHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  95 aeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   ++++ +++ +l+  g av+ +dd     +++ l + + ++ t+g++++a d+r ++ e+   +++++l++ ++  l i+++ +G+hn+ Na+aa+a+
    EHU02330.1 211 KQTFINFLHNLPFYGRAVMCVDDA---VIRDLLPRVGRQITTYGFSEDA-DFRIEDFEQRGAQVHFNLIRQDKAPLAITLNAPGRHNALNAAAAVAV 303
                   ************************...666666666666*********9.7********9999999999999999********************99 PP

                   H CS
  Mur_ligase_M 192 a 192
                   a
    EHU02330.1 304 A 304
                   6 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   1.3e-23   7.5e-20       4      89 ..     327     418 ..     324     420 .. 0.86
   2 ?   -1.9   0.0      0.69   4.1e+03      28      50 ..     444     466 ..     442     476 .. 0.80

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.3e-23
                   SSEEEEE.........TTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHH CS
  Mur_ligase_C   4 Rlevvge.........adgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsia 89 
                   R++++ge          ++ +++dDy+h+p+++ a++ka+r  +pdk+l +vf+p  ++++rtr+++d+f+ ++s+ +d+l++l++y ++e +i 
    EHU02330.1 327 RFDQLGEfatepvngtPGTAMLVDDYGHHPTEVDATIKAARAGWPDKKLAMVFQP--HRYTRTRDLFDDFANVLSQ-VDVLLMLDVYAAGETPIP 418
                   5555555555555554566678888******************************..*******************.9999999******99876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.69
                   HHHHHHHHHHSSSSEEEEEEEES CS
  Mur_ligase_C  28 saalkalreiapdkrlilvfgpg 50 
                    a++++l+ + + + lilv g+g
    EHU02330.1 444 DALVEMLAPLLSGNDLILVQGAG 466
                   57888999999999999999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4077.36
//
Query:       EHU02331.1  [L=305]
Description: D-alanine:D-alanine ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-65  218.8   0.0    6.3e-65  218.5   0.0    1.1  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      1e-19   70.9   0.4    2.9e-18   66.2   0.4    2.4  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    4.4e-09   36.1   0.0    3.8e-08   33.1   0.0    2.0  1  ATP-grasp_4      ATP-grasp domain
    9.3e-06   25.3   0.0    1.4e-05   24.7   0.0    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
       0.01   15.9   0.0      0.019   15.0   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
  ------ inclusion threshold ------
      0.093   12.5   0.0        1.2    8.9   0.0    2.3  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
       0.16   11.1   0.0       0.31   10.2   0.0    1.5  1  GSP_synth        Glutathionylspermidine synthase preATP-grasp


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.0   2.5e-68   6.3e-65       1     204 []     102     302 ..     102     302 .. 0.99

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 2.5e-68
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETS CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgne 94 
                      l++  Glp  ++v ++++++++  ++ +++ +++lg+p+fVKp+ eGSSvG+s+v+++ +l +a+eeaf++d +vl+E++++g+e +v++lg  
       EHU02331.1 102 LWQGRGLPAGKFVWMTRAQMQSGLDAATAAAIAALGFPLFVKPSSEGSSVGISRVNQQGDLMAALEEAFRHDDNVLIEAFLSGEEYTVGILG-- 193
                      7999****************************************************************************************.. PP

                      SCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHHH CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpkla 188
                        +++++++i ++++fydyeaky+ d++q+++pa l++e+e+++q+l+  a++al+++G++RvD++ + eg++ l E Nt PG+T++Sl+p++a
       EHU02331.1 194 -DQILPAIKIKTASEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLVWSAWQALGCQGWGRVDVMTDGEGRFQLLEANTSPGMTSHSLVPMAA 286
                      .89******************************************************************************************* PP

                      HCTT--HHHHHHHHHH CS
  Dala_Dala_lig_C 189 kasGlefkkLvdqlie 204
                      k++Gl+f++Lv +++e
       EHU02331.1 287 KQAGLTFSQLVVRILE 302
                      ************9986 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.4   1.1e-21   2.9e-18       1     103 []       3      85 ..       3      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.1e-21
                      EEEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-EHHHHHHHHTTHHHTCCCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHH CS
  Dala_Dala_lig_N   1 kiavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkwkkkaekleskekkklkkeeekekkaeldvvfpvlhGkngEDGtlqglle 94 
                      k+avl+GG+S+E+evSl+s+++vl  l++  +++  i+  +  ++                    + k++ +d vf++lhG+ gEDGtlq++le
       EHU02331.1   3 KVAVLMGGTSAEREVSLMSGAAVLAGLREAGIDAHGIDTRE--QFV------------------LDLKTQGFDKVFIALHGRGGEDGTLQAVLE 76 
                      79*************************66667766666655..232..................2346789*********************** PP

                      HTT--BSS- CS
  Dala_Dala_lig_N  95 llgipyvGs 103
                      +l++py+Gs
       EHU02331.1  77 FLQLPYTGS 85 
                      ********7 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.5e-11   3.8e-08       2     150 ..     137     272 ..     136     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.5e-11
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefas..eedvsdr 97 
                   +P+ +KPs++ +S+G++++n++ ++ aa+++                 +++++l+E ++ GeE+ v ++ d+   p i   +  ef++  ++++sd 
   EHU02331.1 137 GFPLFVKPSSEGSSVGISRVNQQGDLMAALEEAF----------R----HDDNVLIEAFLSGEEYTVGILGDQI-LPAIKIKTASEFYDyeAKYISDD 219
                  68************************99776543..........2....36789***************99887.77776666677765115668766 PP

  ATP-grasp_4  98 l.yvtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnp 150
                    y+ +a +++e++++l++l+ ++ ++lg + +   + + ++ +g+  ++E n 
   EHU02331.1 220 TqYFCPAGLSAEREAELQQLVWSAWQALGCQ-GWGRVDVMTDGEGRFQLLEANT 272
                  55*************************9986.5567999999999999888886 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.4e-09   1.4e-05      28     179 ..     126     273 ..     112     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.4e-09
                  HHHHHHH.HHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCEC....T CS
  CPSase_L_D2  28 eealaia.keigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslql....r 120
                  + a+a+a + +g+P  +k++  +   G   ++++ +l++++++a+++       ++vl+e +l+g  e+ v +l D+   +i + +   +        
   EHU02331.1 126 DAATAAAiAALGFPLFVKPSSEGSSVGISRVNQQGDLMAALEEAFRHD------DNVLIEAFLSG-EEYTVGILGDQILPAIKIKTASEFYDYeakyI 216
                  44443332679***********************************99......8********99.6999**************99888877656545 PP

                  CCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS CS
  CPSase_L_D2 121 tqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtR 179
                   ++     P+  L++e+  +l++    + +++g +g g v+ + d  ++++ ++E Nt 
   EHU02331.1 217 SDDTQYFCPA-GLSAEREAELQQLVWSAWQALGCQGWGRVDVMTDG-EGRFQLLEANTS 273
                  5677777887.7999999***************************7.**********95 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.3e-06     0.019      25     155 ..     131     271 ..     112     275 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.3e-06
                  EESS--SSSEEEEESS-------B--SS--TTE.............EEEE---SEEEEEEEEE.SSS.EEEEEEEEEEEET...........TEEEEE CS
  ATP-grasp_3  25 eeleeeekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplSvsllsdgek.vlvlavnrqliekaeke.......fvyaGn 108
                  + ++    +l vKp++ + + +++ v+++ ++ aa+ee        l+ +f++G++++v +l+d+   +  + +  ++ + + k        f+ aG 
   EHU02331.1 131 AAIAALGFPLFVKPSSEGSSVGISRVNQQGDLMAALEEAFrhddnvLIEAFLSGEEYTVGILGDQILpAIKIKTASEFYDYEAKYisddtqyFCPAGL 228
                  555555667889****99999**99999999998888876888999*****************98641445666777776644447777444444443 PP

                  EES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEE CS
  ATP-grasp_3 109 vtpietelkeevvelaeevvekleglaGyvGvDlvlkd.eepyviEvN 155
                  ++    e++ e+++l+ ++ ++l g+ G   vD++    +   ++E N
   EHU02331.1 229 SA----EREAELQQLVWSAWQAL-GCQGWGRVDVMTDGeGRFQLLEAN 271
                  33....55688888999999999.999999999988773444555555 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00046       1.2       4      85 ..     175     273 ..     172     296 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
  ATPgrasp_Ter   4 allvmeyLegpEySvDvlaek..............gevlaavpRrKekgglq..............elekdeelielaerlaeefgldglvnvQvre 72 
                   ++l+  +L+g+Ey+v +l ++                +             +              + e+++el +l+ +  +++g++g   v v  
    EHU02331.1 175 NVLIEAFLSGEEYTVGILGDQilpaikiktasefyDYEA------------KyisddtqyfcpaglSAEREAELQQLVWSAWQALGCQGWGRVDVMT 259
                   678889999999999999875455444444422221111............1222333355667677889999999999999999999999999999 PP

  ATPgrasp_Ter  73 dedg.pkLLEiNpR 85 
                   d++g  +LLE N+ 
    EHU02331.1 260 DGEGrFQLLEANTS 273
                   99999999999984 PP

>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.31      69     107 ..     234     272 ..     212     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
   GSP_synth  69 eellelireSwerrepsLygRfDlaydGkgpakllEyNa 107
                 +el +l+ ++w++   + +gR+D + dG+g+++llE N 
  EHU02331.1 234 AELQQLVWSAWQALGCQGWGRVDVMTDGEGRFQLLEANT 272
                 678899999**99999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2585.62
//
Query:       EHU02332.1  [L=279]
Description: membrane anchored protein involved in growth of wall at septum [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   87.5   0.0    1.8e-24   86.8   0.0    1.4  1  FtsQ      Cell division protein FtsQ
    1.3e-22   79.9   0.1    3.6e-22   78.4   0.1    1.8  1  POTRA_1   POTRA domain, FtsQ-type


Domain annotation for each model (and alignments):
>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0     2e-28   1.8e-24       1     117 []     131     248 ..     131     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2e-28
                 EEEEETE.EEEEETT--B-C........CCB.SS-EEE......S-HHHHHCCS-HHHHH...S-SEE-SS-TTEEEE-T.TS-EEEEES....TTHHH CS
        FtsQ   1 AlwqeggedalidaeGevfea..de.eaede.klPlltGpegsekevlevlaelpeelkp..leiseialserrrwqlvlddgvevklgreelaedlee 93 
                 A+w   ++ +++d++G+ f++  +      + +lP+l+Gpegsekevl+ + +++  lk+  ++++ +++++rr+wqlv++d+v+++lgr ++++    
  EHU02332.1 131 ARW---NDAHMVDSDGVSFSVpaNHmG---KeALPMLYGPEGSEKEVLAGYHSMDDVLKArkFTLKVASMTARRSWQLVTSDDVRIELGRTDTMK---- 219
                 89*...999**********88422222...224*****************************99999999********************87777.... PP

                 HHHT-CCHHHC...............CCCT CS
        FtsQ  94 klarlvkilpqlrl..gre....ieyiDLR 117
                 +l+r+++++p l+   + +    i ++DLR
  EHU02332.1 220 RLNRFIELYPVLQQqgE-NehkrINSVDLR 248
                 ************44432.23568******9 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.1     4e-26   3.6e-22       2      69 .]      58     127 ..      57     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 4e-26
                 XX-EEEEES.-SS--HHHHHHHHHTTS.TT-GGGS-HHHHHHHHHH-TTEEEEEEEEETTTEEEEEEEC- CS
     POTRA_1   2 pikqvevsG.nkhlsseeiikalgiek.gtslfsldleaieqrleklpwvksasVrrqwPntleitveEr 69 
                 p+++++v+G  ++++ ++i++a+   + +++++s+d++ i+q++e+lpw+k++sVr+qwP+ l+i+++E+
  EHU02332.1  58 PLSKLVVTGeLHYTTHDDIRQAILSLGpPGTFMSQDVNIIQQQIERLPWIKQVSVRKQWPDELKIHLVEY 127
                 89*********************99999*****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2143.51
//
Query:       EHU02333.1  [L=418]
Description: cell division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-32  111.6   1.4    1.9e-23   82.8   0.1    2.1  2  FtsA            Cell division protein FtsA
    2.7e-30  104.6   2.2    5.6e-30  103.6   2.2    1.6  1  SHS2_FTSA       SHS2 domain inserted in FTSA
    3.4e-10   39.2   0.4    3.4e-10   39.2   0.4    1.8  3  MreB_Mbl        MreB/Mbl protein
    4.2e-10   39.2   0.4    1.5e-06   27.5   0.1    2.6  2  PilM_2          Type IV pilus assembly protein PilM;
    0.00092   18.2   0.4     0.0025   16.8   0.1    1.8  2  EutA            Ethanolamine utilisation protein EutA
     0.0018   17.3   0.9     0.0058   15.7   0.4    1.8  2  DDR             Diol dehydratase reactivase ATPase-like domai
  ------ inclusion threshold ------
      0.017   13.8   0.3        4.5    5.8   0.1    2.5  3  Actin           Actin
      0.055   12.7   0.5       0.13   11.5   0.1    1.9  2  Hydantoinase_A  Hydantoinase/oxoprolinase
      0.079   11.1   0.6       0.26    9.4   0.1    1.9  2  HSP70           Hsp70 protein


Domain annotation for each model (and alignments):
>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   1.1e-09   2.2e-06       1      86 [.      11     180 ..      11     200 .. 0.81
   2 !   82.8   0.1   9.6e-27   1.9e-23       1     103 []     207     381 ..     207     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
                 EEEEE-SSSEEEEEEETTEEEEEEEES-...-HHHHHHH.......HHHHHT--HHHHHHHH.HHH--S--...................EEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx.......xxxxxxxxxxxxxxxx.xxxxxxxx...................xxxxxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv...ggngitkd.......iakalrtaveeAerik.ikyGsala...................ekeigrkel 69 
                 ++++iG+ k+ ++v+e      +++igv   +++g++k+       ++k+++ a+++Ae ++ +++ s++                    e+e++++++
  EHU02333.1  11 VGLEIGTAKVAALVGEILPDGMVNIIGVgscPSRGMDKGgvndlesVVKCVQRAIDQAELMAdCQISSVYLalsgkhiscqneigmvpisEEEVTQDDV 109
                 689**************54444******99999*****************************3333333337787777786666655555444444444 PP

                 H.....................................................GGGGSTTHHHHHHHH.H CS
                 x.....................................................xxxxxxxxxxxxxxx.x RF
        FtsA  70 s.....................................................ggsalpnleelaera.l 86 
                 +                                                        + +n+++++er+ l
  EHU02333.1 110 EnvvhtaksvrvrdehrilhvipqeyaidyqegiknpvglsgvrmqakvhlitcHNDMAKNIVKAVERCgL 180
                 49999999999999999999999999999*9*********************9999999999999999962 PP

  == domain 2  score: 82.8 bits;  conditional E-value: 9.6e-27
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--..................EEEEEHHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxx........... RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkdiakalrtaveeAerikikyGsala..................ekeigrkels........... 70 
                 ++vDiG+g++d+av+ +gal+h++vi+++gn +t+dia+a++t+  +Ae ik+++G+al                   +++++r++l+           
  EHU02333.1 207 CVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPTDAEAIKVRHGCALGsivgkdenvevpsvggrpPRSLQRQTLAevieprytell 305
                 79**********************************************************999999999999999888777777777688889999999 PP

                 ...............................GGGGSTTHHHHHHHHHT-.............HH.HT-GGGHHHHH CS
                 ...............................xxxxxxxxxxxxxxxxxxx...........xxx.xxxxxxxxxxx RF
        FtsA  71 ...............................ggsalpnleelaeralspk...........lee.vsdpeyasalg 103
                                                g++++++l+ +a+r++ ++           l++ +++  y++a+g
  EHU02333.1 306 nlvndeilqlqeqlrqqgvkhhlaagivltgGAAQIEGLAACAQRVFHTQvrigqplnitgLTDyAQESYYSTAVG 381
                 99999999999999999999**************************944344444558888777799999**9998 PP

>> SHS2_FTSA  SHS2 domain inserted in FTSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   2.2   2.8e-33   5.6e-30       1      79 []      85     162 ..      85     162 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 2.8e-33
                 .....EEEEEEEEE-TTS-E--HHHHHHHHHHH....CHTTEEEEEEEEEEEEETTTEEESB-TT-EESEEEEEEEEEE CS
   SHS2_FTSA   1 GkhiksvnskgvvaisgedeiteedvervleaakavaipedreilhvipqeyivDgqegikdPvGmsGvrLevevhvit 79 
                 Gkhi+++n+ g+v+is+e e+t++dve+v+++ak+v+++++++ilhvipqey++D qegik+PvG+sGvr++++vh+it
  EHU02333.1  85 GKHISCQNEIGMVPISEE-EVTQDDVENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLIT 162
                 89****************.***********************************************************8 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.79   1.6e+03      65      95 ..      48      78 ..      43     127 .. 0.63
   2 ?   -3.4   0.0       1.6   3.3e+03     235     268 ..     102     135 ..      86     143 .. 0.58
   3 !   39.2   0.4   1.7e-13   3.4e-10     142     305 ..     201     360 ..     160     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.79
                TTEESSHHHHHHHHHHHHHHHHTSS-SS--E CS
    MreB_Mbl 65 dGviadlevaeellkyfikkvkkkkslskpr 95
                +G + dle + + +++ i++++    ++ ++
  EHU02333.1 48 KGGVNDLESVVKCVQRAIDQAELMADCQISS 78
                5555555555555555555554443333333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
                 EEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHH CS
    MreB_Mbl 235 vevsseevrealkepvsaiveavkevLektppeL 268
                  ev++++v+++++++ s  v   +++L+ +p e 
  EHU02333.1 102 EEVTQDDVENVVHTAKSVRVRDEHRILHVIPQEY 135
                 3455555555555555555555555555555554 PP

  == domain 3  score: 39.2 bits;  conditional E-value: 1.7e-13
                 TSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHH CS
    MreB_Mbl 142 eepsgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrdlvtglpkevevsse 240
                 e+  g  vvdiGggt ++av + g +  +k +  aG+ + ++i       y    + + ae+ik++ g+a  +   +  +++   +    p++  ++ +
  EHU02333.1 201 ERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIA------YAFGTPPTDAEAIKVRHGCALGSIVGKDENVEVPSVGGRPPRS--LQRQ 291
                 5567899***********************************95......89999**********9999887766665555544443334443..4455 PP

                 HHHHHHH....HHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-S CS
    MreB_Mbl 241 evrealk....epvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvae 305
                 +++e+++    e ++ + +++ +  e+   + ++  +  givltGG+a+++gl  + ++ ++ +v++++
  EHU02333.1 292 TLAEVIEprytELLNLVNDEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGQ 360
                 555555500005555555666666677777777788889********************9999999874 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   7.5e-10   1.5e-06     107     237 ..     133     261 ..      12     265 .. 0.73
   2 !    9.2   0.0   0.00027      0.54     247     313 ..     296     367 ..     285     382 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7.5e-10
      PilM_2 107 devslDFevlgpsa.ekpd...kvevllaAarkekvedrvalleaaglkakvvDvesyAleraleliasqlpdkgkekvvaivdigasrttlsvlrdgk 201
                 +e  +D++   +++   ++   + +v l  +++++ ++ v+++e  glk+   D   +A  ++     + l ++++e  v++vdig  ++ ++v++ g 
  EHU02333.1 133 QEYAIDYQEGIKNPvGLSGvrmQAKVHLITCHNDMAKNIVKAVERCGLKV---DQLIFAGLAS---SFAVLTEDERELGVCVVDIGGGTMDIAVYTGGA 225
                 666677765333321222211145899999*******************9...7777775553...556778889999********************* PP

      PilM_2 202 ivYtreqafGgeqltqeivrrYglsleeaekkkrsg 237
                   +t+   + g+ +t +i+  +g    +ae+ k+++
  EHU02333.1 226 LRHTKVIPYAGNVVTSDIAYAFGTPPTDAEAIKVRH 261
                 ********************************9876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00027
      PilM_2 247 vlepflealaqeisralqffltssqqnkvdk.....ilLaGGtaslpgleelleeelgisttvanpfaemel 313
                 v+ep  ++l++ ++  +       +q+ v++     i+L+GG a+++gl+   +   ++++ + +p++   l
  EHU02333.1 296 VIEPRYTELLNLVNDEILQLQEQLRQQGVKHhlaagIVLTGGAAQIEGLAACAQRVFHTQVRIGQPLNITGL 367
                 5555555555555555444433334444433333339******************99**9999999876555 PP

>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   2.1e+03      37      70 ..      82     114 ..      68     117 .. 0.76
   2 !   16.8   0.1   1.2e-06    0.0025     126     181 ..     186     242 ..     161     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
        EutA  37 eivekevlyrseiiftPlleeeeidaekikeiie 70 
                 ++  k++  + ei + P++e ee+ ++ ++++++
  EHU02333.1  82 ALSGKHISCQNEIGMVPISE-EEVTQDDVENVVH 114
                 45689999999999999865.5677888888875 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.2e-06
        EutA 126 iiagkGagaaalsk.ekstrvlniDiGGGtsnlalfkeGevidtacldvGGrlikid 181
                 i ag  ++ a l + e++  v  +DiGGGt  +a+++ G + +t  +   G+++  d
  EHU02333.1 186 IFAGLASSFAVLTEdERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSD 242
                 45777776666655156789*************************999999988766 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.53   1.1e+03     226     268 ..      91     133 ..      77     143 .. 0.73
   2 !   15.7   0.4   2.9e-06    0.0058     123     189 ..     194     259 ..     119     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.53
         DDR 226 lkedelvplee.dlslekirsvRreaKekvfvtnalRalkkvsp 268
                  +e ++vp++e +++ + + +v ++aK+ v v++  R l+ +  
  EHU02333.1  91 QNEIGMVPISEeEVTQDDVENVVHTAKS-VRVRDEHRILHVIPQ 133
                 4567899996515677889999999885.788888888876654 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.9e-06
         DDR 123 lGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGemvtlliaseLgledrelaEdiKk 189
                    lt    e  + ++D+G+G++D a+ +     ++  +  AG++vt  ia  +g  + + aE iK 
  EHU02333.1 194 FAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGT-PPTDAEAIKV 259
                 4456777778899***********999887666666667889*************9.8888999994 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.6   3.3e+03      63      87 ..      44      68 ..      43      78 .. 0.78
   2 ?    5.8   0.1    0.0023       4.5     144     189 ..     206     249 ..     181     275 .. 0.84
   3 ?    5.7   0.0    0.0024       4.8     318     341 ..     322     345 ..     284     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.6
       Actin 63 spvedGvvedwdaveelwehvlkee 87
                + +++G v+d ++v +  ++++ + 
  EHU02333.1 44 RGMDKGGVNDLESVVKCVQRAIDQA 68
                5688999999999999888888764 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0023
       Actin 144 glvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellss 189
                  +vvD+G + t+ ++V+ G +L++ ++  + +G+ +t+ ++  + +
  EHU02333.1 206 VCVVDIGGG-TMDIAVYTGGALRH-TKVIPYAGNVVTSDIAYAFGT 249
                 58*****98.66679*******75.7899*********99887766 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0024
       Actin 318 vdlrpeLlanivvtGGnsllpglt 341
                   ++++L+a iv+tGG++ ++gl 
  EHU02333.1 322 QGVKHHLAAGIVLTGGAAQIEGLA 345
                 567889***************996 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.7e-05      0.13      54     106 ..     182     231 ..     150     288 .. 0.75
   2 ?   -1.9   0.0      0.77   1.5e+03     218     255 ..     305     341 ..     301     352 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.7e-05
  Hydantoinase_A  54 pvetilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslikdgevevsle 106
                     + ++i +G a++ +++ +    ++e  v ++D+GG ++D++++  g  +++  
      EHU02333.1 182 VDQLIFAGLASSFAVLTE---DERELGVCVVDIGGGTMDIAVYTGGALRHTKV 231
                     557899999999999888...555556789**************777654433 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.77
  Hydantoinase_A 218 lsvavenmanavrklsvergldpkeltlvvfGGaGaqh 255
                     l+++++++ +  ++l +++g++ + ++ +v +G++aq+
      EHU02333.1 305 LNLVNDEILQLQEQL-RQQGVKHHLAAGIVLTGGAAQI 341
                     556666666544444.7777777777766666666665 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00013      0.26     150     202 ..     169     220 ..     161     225 .. 0.84
   2 ?   -1.6   0.0      0.29   5.7e+02     304     350 ..     306     352 ..     286     357 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00013
                 HHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEEEEE CS
       HSP70 150 qatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfdvSi 202
                 +++  A +  GL+v  ++    A + a  l ++++e  v v+D+Gggt+d+ +
  EHU02333.1 169 KNIVKAVERCGLKVDQLIFAGLASSFAV-LTEDERELGVCVVDIGGGTMDIAV 220
                 4667788999999999999999999997.66666799**************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.29
                 HHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHT CS
       HSP70 304 dllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelf 350
                 +l+++ +  +++ l++ ++k +    +vl GG++ i  +    + +f
  EHU02333.1 306 NLVNDEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF 352
                 47777788899999999999999999******999876666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3136.01
//
Query:       EHU02334.1  [L=384]
Description: GTP-binding tubulin-like cell division protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-42  146.2   0.9    1.9e-42  145.7   0.9    1.2  1  Tubulin         Tubulin/FtsZ family, GTPase domain
    2.3e-37  127.2   1.0    6.1e-37  125.8   1.0    1.8  1  FtsZ_C          FtsZ family, C-terminal domain
     0.0036   17.2   0.1     0.0094   15.9   0.1    1.7  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.053   12.7   6.9       0.81    8.8   1.8    2.3  2  Tubulin_2       Tubulin like
      0.071   13.6   0.1       0.21   12.1   0.0    1.8  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.9   5.4e-46   1.9e-42       2     196 ..      13     172 ..      12     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 5.4e-46
                 EEEEEEHHHHHHHHHHHHH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHHH CS
     Tubulin   2 iivigvGqcGnqignelwellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaae 100
                 i+vigvG++G+++++++++    e  i             +g ve++    a++td+q+l+++  g      +++++g++ ++++gag++pevg+  ae
  EHU02334.1  13 IKVIGVGGGGGNAVEHMVR----E-RI-------------EG-VEFF----AVNTDAQALRKTAVG------QTIQIGNNITKGLGAGANPEVGRNSAE 82 
                 89*****************....7.99.............88.9***....***************......*************************** PP

                 HTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS
     Tubulin 101 eileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkelieesdavividNdaLlkil 196
                 e +e +r ++e++d+   +fi a++gGGTG+G++pv++ev+k+   ++l+v+vv+ P++f e++ ++  a++++ el++++d++i+i+Nd+Llk+l
  EHU02334.1  83 EDREALRSALEGADM---VFIAAGMGGGTGTGAAPVVAEVAKDL--GILTVAVVTKPFNF-EGKKRMAFAEQGIAELSKHVDSLITIPNDKLLKVL 172
                 ***************...**************************..**************.*******************************9985 PP

>> FtsZ_C  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   1.0   1.7e-40   6.1e-37       1      94 [.     221     315 ..     221     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 1.7e-40
                 EEEEEEEEEEESTTHHHHHHHHHHTSGGGT.--GGG-SEEEEEEEE-TT--HHHHHHHHHHHHHHS-TTSEEEEEEEE-TT--SEEEEEEEEES- CS
      FtsZ_C   1 GvAmmgvGeasgedraeeaaeaaisspLLd.vdlsgAkgvlvnitggsdltlkEveevaetireevdeeanvivGavideeledeirvtvvatgl 94 
                 G Ammg G a gedraeeaae aisspLL+ +dlsgA+gvlvnit+g dl l+E+e+v++tir +++++a+v++G+++d+e++de+rvtvvatg+
  EHU02334.1 221 GYAMMGSGVACGEDRAEEAAEMAISSPLLEdIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDPEMNDELRVTVVATGI 315
                 89********************************************************************************************8 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.6e-06    0.0094      49      97 ..      83     132 ..      65     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-06
                     T-CCHHHHHHTT-SEEEES---TCCHHHH.HHHHHHHHHHCT--EEEEEE CS
  NAD_binding_10  49 tdvedlaealkgadaVvsalggggkdeeg.aknivdaakeagvkRfvlvs 97 
                     +d e+l++al+gad V++a+g gg++ +g a  ++++ak  g+  + +v+
      EHU02334.1  83 EDREALRSALEGADMVFIAAGMGGGTGTGaAPVVAEVAKDLGILTVAVVT 132
                     5899****************888886666356666788888887777776 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.5     0.001       3.7       2      54 ..      15      56 ..      15      68 .. 0.76
   2 ?    8.8   1.8   0.00022      0.81     115     174 ..      68     114 ..      56     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.001
   Tubulin_2  2 viGLGGtGgkvlaelrrrlreelgslelpdkvqFlyiDtdeneknrlkdatde 54
                viG+GG Gg++++   +++re++      + v+F ++ td ++++++  a ++
  EHU02334.1 15 VIGVGGGGGNAVE---HMVRERI------EGVEFFAVNTDAQALRKT--AVGQ 56
                79******98765...6677788......789***********9765..4444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00022
   Tubulin_2 115 eGAGqiRtvGRlalfanleeirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGifl 174
                  GAG ++ vGR    +++ee realr+a++ +           vf++ ++ GGTG G + 
  EHU02334.1  68 LGAGANPEVGR----NSAEEDREALRSALEGADM---------VFIAAGMGGGTGTGAAP 114
                 58899999998....5778888888888887766.........*************9865 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8     1e+04      71      88 ..     105     123 ..      99     141 .. 0.64
   2 ?   12.1   0.0   5.8e-05      0.21      12      76 ..     276     345 ..     274     348 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.8
                 STSSSHHHHHHHH.HHHHT CS
   HATPase_c  71 gggtGlGlsivkk.lvelm 88 
                 gggtG G++ v + +++ +
  EHU02334.1 105 GGGTGTGAAPVVAeVAKDL 123
                 6888886654433365544 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHHHSTTTEEEEEEEE...EE..TEEEEEEEESSSSSTTHHHTGTCS..TTCHHCSTCHTSTSSSH CS
   HATPase_c  12 nlvdNavkfatkageieveika...se..ddlvisveDnGiGipkedlkklfe..kfsqddstkrggggtGl 76 
                 + v+N +++   +++ +v i +   +e  d+l+++v  +GiG++k     l +  + sq    +++++++G+
  EHU02334.1 276 ETVGNTIRA-FASDNATVVIGTsldPEmnDELRVTVVATGIGMDKRPEITLVTnkPASQ-PVMDHRYQQHGM 345
                 679999998.77788888887644422678**************966554544467777.666677777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3217.19
//
Query:       EHU02335.1  [L=305]
Description: UDP-3-O-acyl N-acetylglucosamine deacetylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-107  358.3   0.0   3.1e-107  358.1   0.0    1.0  1  LpxC      UDP-3-O-acyl N-acetylglycosamine deacetylase


Domain annotation for each model (and alignments):
>> LpxC  UDP-3-O-acyl N-acetylglycosamine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.1   0.0  1.7e-111  3.1e-107       1     269 [.       4     276 ..       4     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 358.1 bits;  conditional E-value: 1.7e-111
                 EEEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSS.ETEEESSGGGEEEESSSEEEE.ETTEEEB--HHHHHHHHHTT--SEEEEESSSB-- CS
        LpxC   1 qrTlkksvslsGvGLhsGekvevtlkPaeantGivfrrtdlp.ekeipasienvsdtklsttlg.kkgvkvstvEHllaAlaalgidnalievdgeEvP 97 
                 qrTlk+ v+++GvGLh+G+kv++tl+Pa+antG+++rrtdl+   ++pa++++v+dt lst+l  ++gv++stvEHl aAla+lgidn+++evd++E+P
  EHU02335.1   4 QRTLKRIVQATGVGLHTGKKVSLTLRPAPANTGVIYRRTDLNpPVDFPADAKYVRDTMLSTCLVnDEGVRISTVEHLNAALAGLGIDNIIVEVDAPEIP 102
                 99***************************************976678*****************9889******************************* PP

                 -TTSSSHHHHHHHHHHTEEEEEEE--EEEE-S-EEEEETTEEEEEEE-SSEEEEEEEEESSTTCCC..CEEEEETTCCHHHHHTTT--EEEEHHHHHHH CS
        LpxC  98 ilDGSaaefveaieeagikeqeaerkvlrvkkpveveegdkfvallPsdelklsveidfehpaige..qslslelseesfakeiapARTFgflkeveal 194
                 i+DGSaa+f++++ +agi++ ++++k++rvk++v+ve+gdk+++++P+++++l+++idf+hpai+   q++++++s e+f+++i++ARTFgf++e+e+l
  EHU02335.1 103 IMDGSAAPFIYLLMDAGIEQLSSAKKFVRVKQTVSVEDGDKWAEIKPYNGFSLDFTIDFKHPAIDAssQRYQMKFSAEAFVRQISRARTFGFMHEIEYL 201
                 ****************************************************************9888******************************* PP

                 HHTTSSTT-STTTSEEEESSSBSSTT--SSTTHHHHHHHHHHHHHHGGGSSEEEEEEEEES--HHHHHHHHHHHH CS
        LpxC 195 rkaglakGgsldnavvideekvlneeglrfedEfvrHKiLDliGDLallgapllghvvaykagHalnnkllrall 269
                 +++gl +Ggsld+a+ +d+ +vlneeglrfedEfvrHK+LD+iGDL ++g++++g+++ayk+gHalnnkll+a+l
  EHU02335.1 202 QSKGLCLGGSLDCAIGLDDFRVLNEEGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL 276
                 ************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2297.88
//
Query:       EHU02336.1  [L=168]
Description: secretion monitor precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-45  153.4   1.5    4.8e-45  153.2   1.5    1.0  1  SecM      Secretion monitor precursor protein (SecM)
     0.0019   19.1   0.1      0.011   16.6   0.1    2.3  1  DUF2547   Protein of unknown function (DUF2547)


Domain annotation for each model (and alignments):
>> SecM  Secretion monitor precursor protein (SecM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   1.5   5.4e-49   4.8e-45       1     145 [.      24     164 ..      24     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 5.4e-49
                 XXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
        SecM   1 mVAaslGlpavlaeaaeklsapntsssqsrqnqalvsfdsLallqesqrrpsfsvdYWqQhAirtvIrhLSfalapqelkaeaeessplqaqklalLdt 99 
                 mVAaslGlpa +a++ae l++ ++ss++s     +v+fd+L++lqe++rrpsf+vdYW+QhAirtvIrhLSf+l+p++  +++e+++pl+aqklal+d+
  EHU02336.1  24 MVAASLGLPA-CAQTAE-LNTGSESSASSLFIGNAVRFDHLIRLQEASRRPSFTVDYWHQHAIRTVIRHLSFTLTPHS--QAEEQVHPLAAQKLALIDS 118
                 9*********.999999.55555555555555559******************************************6..5679*************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX----SS-----------X CS
        SecM 100 LsalLtqeakpeailrqaeraavvssssystalwlaqvqGIRAGPa 145
                 L+alLt++++ +  +   +   v+     + a+w  +v+GIRAGPa
  EHU02336.1 119 LHALLTSQTAQTYDAFGLSLLPVSDAPALTRAAWHGKVHGIRAGPA 164
                 *******999777777899999***********************7 PP

>> DUF2547  Protein of unknown function (DUF2547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.2e-06     0.011       1      47 [.      13      60 ..      13     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
     DUF2547  1 ktnFwsqLllgivAi.faLPeaqelaneeav.enyqntqsvqqqvleta 47
                +++Fw  +llg+vA  + LP   ++a+ ++  e+  ++     +++++ 
  EHU02336.1 13 RRYFWPHFLLGMVAAsLGLPACAQTAELNTGsESSASSL-FIGNAVRFD 60
                589**********7549***8766655543325555444.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1317.12
//
Query:       EHU02337.1  [L=901]
Description: preprotein translocase subunit, ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.9e-132  439.9   0.4   6.5e-132  439.2   0.4    1.4  1  SecA_DEAD     SecA DEAD-like domain
    4.3e-69  232.6   5.4    4.7e-69  232.5   3.8    1.9  2  SecA_SW       SecA Wing and Scaffold domain
    4.7e-40  136.7   0.2    1.7e-39  134.9   0.2    2.0  1  SecA_PP_bind  SecA preprotein cross-linking domain
    7.4e-11   41.7   9.7    1.2e-10   41.1   9.7    1.3  1  SEC-C         SEC-C motif
    0.00058   19.7   0.0     0.0025   17.6   0.0    2.1  2  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.035   14.4   0.3       0.14   12.4   0.3    2.0  1  DUF2175       Uncharacterized protein conserved in archaea (D
       0.15   12.4   2.3       0.79   10.1   0.0    2.8  2  Helicase_C    Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.2   0.4  2.6e-135  6.5e-132       2     290 .]       7     402 ..       6     402 .. 0.97

  Alignments for each domain:
  == domain 1  score: 439.2 bits;  conditional E-value: 2.6e-135
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD   2 kkllgsknerelkklkkiveeineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakrvlgmrhydvQliGglvlhegkiaemkTG 100
                 +k++gs+n+r+l++++k+v+ in++e+++++lsdeeL+akte ++erl++ge+l++llpeafa+vrea+krv+gmrh+dvQliGg+vl++  iaem+TG
  EHU02337.1   7 TKVFGSSNDRTLRRMRKTVDIINKMEPDFEKLSDEELKAKTELFRERLKKGESLESLLPEAFATVREASKRVFGMRHFDVQLIGGMVLNNRCIAEMRTG 105
                 799************************************************************************************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 101 EGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYeaditYgtnnelgfdyLrDnlalskeelvqrgln 199
                 EGKtl+atlpaylnaltgkgvhvvtvndYLa+rdae+ +p++eflGlsvg+  s l s ++reaY+aditYgtnne+gfdyLrDn+a+s+ee+vqr+l+
  EHU02337.1 106 EGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSVGINMSGLPSVAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 204
                 *************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
   SecA_DEAD 200 faivDEvDsvLiDeArtpLiisgpaeeeselyeeakklvkeleeeed.................................................... 246
                 +a+vDEvDs+LiDeArtpLiisgpae++sely++++k++ +l ++e+                                                    
  EHU02337.1 205 YALVDEVDSILIDEARTPLIISGPAEDSSELYTKVNKIIPHLIRQEKedsdhfqgegdfwvdekarqahmterglvkveellvsqgimvegeslysptn 303
                 ***************************************5554433334557999999999999*********************************** PP

                 .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 247 .......................................................akegveieeesqtlatitlqnffrlYeklaGmtGTaeteaeefk 290
                                                                        akegvei++e+qtla+it+qn+frlYeklaGmtGTa+tea ef+
  EHU02337.1 304 imlmhhvtaalrahalftrdvdyivkdgeviivdehtgrtmqgrrwsdglhqaveAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFS 402
                 *************************************************************************************************95 PP

>> SecA_SW  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.5   8.9e+03     143     166 ..     348     371 ..     321     397 .. 0.72
   2 !  232.5   3.8   1.8e-72   4.7e-69       1     199 []     617     830 ..     617     830 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHCCCTTSSSS CS
     SecA_SW 143 aWkehLdamdeLregiglrgygqk 166
                 +W + L++  e +eg+++++ +q 
  EHU02337.1 348 RWSDGLHQAVEAKEGVEIQNENQT 371
                 566666666666777766666554 PP

  == domain 2  score: 232.5 bits;  conditional E-value: 1.8e-72
                 -B-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHCHHHHHHHHHHHHHHHHHCHHHHS.SS.C.SHHHHHHHHHCCCS CS
     SecA_SW   1 piesklvsksienaQkkvEernfdiRknlleYDdVmnkQRkviYkqRrevLegesedlrerildliedvveeiveesvpeeeke.ewdleglleelkee 98 
                 +ie+++v+k+i+naQ+kvE+rnfdiRk+lleYDdV n+QR++iY+qR+e+L+   +d++++i+++ edv ++i+++++p+++ e  wd+ gl+e+l++ 
  EHU02337.1 617 AIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV--SDVSDTINSIREDVYKSIIDSYIPPQSLEeMWDVPGLEERLRND 713
                 69*************************************************55..59**********************987755************** PP

                 SSTSST..............HHHHHHHHHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSSS-CCHHHHHHHHHHHH CS
     SecA_SW  99 fsvele..............elaeellekaekayekkeeei..ellrelervvlLevlDkaWkehLdamdeLregiglrgygqkdPlqeYkkegfelFe 181
                 f ++l+              +l+e+++++a ++y++kee +  e++r++e+ v+L++lD+ WkehL amd+Lr+gi+lrgy+qkdP++eYk+e+f +F 
  EHU02337.1 714 FDLDLPisewldkepdlheeTLRERIMKHAADSYAAKEEIVgaEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKHEYKRESFAMFA 812
                 ***********************************9999889999****************************************************** PP

                 HHHHHHHHHHHHHCCCT. CS
     SecA_SW 182 emlarikeevvkkllkve 199
                 +ml+++k ev+++l kv+
  EHU02337.1 813 AMLETLKYEVISTLSKVQ 830
                 **************9985 PP

>> SecA_PP_bind  SecA preprotein cross-linking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.2   6.6e-43   1.7e-39       2     111 .]     232     358 ..     231     358 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 6.6e-43
                   HHHHHHHHHHHHCCCHTTC...........CECCCTTTSEEEESHHHHHHHHHCCT-......SSSTTSCCHCCHHHHHHHHHHHHHCSTTTTTEEE CS
  SecA_PP_bind   2 seelyekanklvkklkeee...........dyevdekkktveltekGvekvekllkv......keelydeenlelvhhvnqaLkAhtlferdvdYiv 81 
                   s+ely+k+nk++++l ++e           d+ vdek++++++te+G+ kve+ll         e+ly+++n+ l+hhv++aL+Ah+lf+rdvdYiv
    EHU02337.1 232 SSELYTKVNKIIPHLIRQEkedsdhfqgegDFWVDEKARQAHMTERGLVKVEELLVSqgimveGESLYSPTNIMLMHHVTAALRAHALFTRDVDYIV 328
                   689***********7776669999999999************************74455566789******************************** PP

                   CTTCEEEBSTTTSSEBTS--SSTTHHHHHH CS
  SecA_PP_bind  82 kdgeviivDeftGRlmegrrysdGLhqaie 111
                   kdgeviivDe+tGR+m+grr+sdGLhqa+e
    EHU02337.1 329 KDGEVIIVDEHTGRTMQGRRWSDGLHQAVE 358
                   *****************************8 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   9.7   4.6e-14   1.2e-10       1      19 []     881     899 ..     881     899 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4.6e-14
       SEC-C   1 RNdpCPCGSGkKYKkCCgp 19 
                 RNdpCPCGSGkKYK+C+g+
  EHU02337.1 881 RNDPCPCGSGKKYKQCHGR 899
                 9****************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.6e-07    0.0025      14     134 ..      95     215 ..      85     225 .. 0.78
   2 ?   -3.4   0.1       2.8   7.1e+03     118     147 ..     825     853 ..     766     859 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.6e-07
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH.....HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp.....gr 107
                 ++ ++++++TG GKTl + +p++ +       tg+ + +v+    La+  ++n + ++++++l+v   ++g +   ++++    +di++gt      + 
  EHU02337.1  95 NNRCIAEMRTGEGKTLTATLPAYLN-----ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSVGINMSGLPSVAKREAY--AADITYGTNneygfDY 186
                 56899******************33.....577888888888999*****************9999878887776666666..89******95444433 PP

                 HHHHH......HCTSSHCTTEEEEEEETHHHHH CS
                 xxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 108 lddll......stgklnlsqvrflVlDEadrll 134
                     l      s ++   +++ +  +DE+d +l
  EHU02337.1 187 ----LrdnmafSPEERVQRKLHYALVDEVDSIL 215
                 ....34444674444447889999999999876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.8
                 HCTTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 118 nlsqvrflVlDEadrlldqgfsdfinriln 147
                 +ls+v++    E+  + +q ++++ +r+++
  EHU02337.1 825 TLSKVQVRMPEEVEAMEQQ-RREEAERLAQ 853
                 3677777777777777777.6666666554 PP

>> DUF2175  Uncharacterized protein conserved in archaea (DUF2175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   5.6e-05      0.14      26      90 ..     789     853 ..     783     859 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
     DUF2175  26 vHyeClvekarkklkesedaaaLleleevlneeivklkelervaedeevkkvleqkrkelEkaaa 90 
                 +H+  +++k  k+ ++ e+ a++  + e+l++e++   +  +v   eev  + +q+r e+E+ a 
  EHU02337.1 789 IHLRGYAQKDPKHEYKRESFAMFAAMLETLKYEVISTLSKVQVRMPEEVEAMEQQRREEAERLAQ 853
                 788888888888888889999***********************9****************9986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00031      0.79       2      82 ..     434     513 ..     433     515 .. 0.83
   2 ?    0.4   0.7      0.31   7.9e+02      95     111 .]     563     579 ..     553     579 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidi 82 
                 k++a++e + +++++g+ +l+ + +i++ e      l++ gik  vl+++  ++e + + ++ + g   v iat++a+rG di
  EHU02337.1 434 KIDAIIEDIrERTAKGQPVLVGTISIEKSEVvS-NELTRAGIKHNVLNAKFHAREADIVAQAGQPGA--VTIATNMAGRGTDI 513
                 777777777788899999999999999886532.334577**************9999999988877..99***********8 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.31
                 SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 rnvtsyiqriGRtgRag 111
                 ++ +  +q +GR+gR g
  EHU02337.1 563 ESRRIDNQLRGRAGRQG 579
                 5667889********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 6223.67
//
Query:       EHU02338.1  [L=131]
Description: MutT family mutator protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-19   70.5   0.5    1.4e-19   70.4   0.5    1.0  1  NUDIX     NUDIX domain
    2.8e-17   62.7   0.1    3.2e-17   62.5   0.1    1.0  1  NUDIX_4   NUDIX domain
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.018   14.6   0.0    1.1  1  NUDIX_2   Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.5   2.4e-23   1.4e-19       3     130 ..       5     125 ..       1     126 [. 0.76

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 2.4e-23
                 EEEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSS CS
       NUDIX   3 rravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegelep 98 
                 ++avg+ ++n +++++l++r+  ++ ++ We+PgGk+e+gE+pe+ ++REl EEtG+e+ + + +g      +++  y+d +  l++fl e ++ge+  
  EHU02338.1   5 QVAVGI-IRNADKHIFLAQRAaSSYMANkWEFPGGKIEAGESPEQGLVRELLEETGIEVTDARAIG-----IKDH-TYDDLRVTLHFFLvEGWKGEPWG 96 
                 445555.5777778******985555556****************************998899999.....3333.34445666777777******887 PP

                 TSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  99 ndenevsevrwvpleellkeklaaesrkllpw 130
                 +   e +  rwv+  +l +e++ a++ +l+++
  EHU02338.1  97 K---EGQPQRWVEQRALIAEEFPAANHELIAR 125
                 7...5556689999999888888888877766 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   5.4e-21   3.2e-17       1     109 [.       7     124 ..       7     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 5.4e-21
                 EEEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEEEEEEEEEE.EEETTEEEEEEEEEE......EEE.S..---.. CS
     NUDIX_4   1 avllirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelgieveelepgtvk.HvftHfrltltvylv......rveegeeapa.. 85 
                 av +ir++ ++++l +R ++  +++ wefPgg+ e+ge++e+ l+    ee+giev+  +++ +k H++ ++r+tl+++lv       +       +  
  EHU02338.1   7 AVGIIRNAdKHIFLAQRAASSYMANKWEFPGGKiEAGESPEQGLVrelLEETGIEVTDARAIGIKdHTYDDLRVTLHFFLVegwkgePWG------Keg 99 
                 6899***9899**********************999999887665556679999877555533333***********9988855544333......234 PP

                 .EEEEEEGGGGGGS---CCCHCCHH CS
     NUDIX_4  86 .elrwvtpeeleeyalptavrklle 109
                    rwv++++l ++ +p+a++ l++
  EHU02338.1 100 qPQRWVEQRALIAEEFPAANHELIA 124
                 567******************9986 PP

>> NUDIX_2  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.1e-06     0.018      55     107 ..      13      70 ..       3      81 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.1e-06
     NUDIX_2  55 helphvLlLqielq.....efkLpggklksgedeiegLkrkLakklskekeveeeiev 107
                 +   h++l q++ +     ++++pggk+++ge++++gL r L +    e +  + i +
  EHU02338.1  13 NADKHIFLAQRAASsymanKWEFPGGKIEAGESPEQGLVRELLEETGIEVTDARAIGI 70 
                 455799999976653444469********************98887766555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1043.30
//
Query:       EHU02339.1  [L=65]
Description: zinc-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-24   86.0   4.5    1.3e-24   85.6   4.5    1.2  1  YacG         DNA gyrase inhibitor YacG
  ------ inclusion threshold ------
       0.02   14.3   0.1       0.02   14.3   0.1    1.6  2  zf-ribbon_3  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   4.5   1.5e-28   1.3e-24       1      51 [.       8      58 ..       8      64 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.5e-28
        YacG  1 vkCPtCkkevewseenpfrPFCSeRCkliDLGeWaseeyripaeeaeedee 51
                v+CP+C+k+v w+e +p+rPFCS+RC+liDLGeWa+ee+rip++++ +d++
  EHU02339.1  8 VNCPQCGKTVIWDELSPWRPFCSKRCQLIDLGEWAAEEKRIPSSDELNDSD 58
                89****************************************999888765 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.3e-06      0.02       2      11 ..       7      17 ..       6      21 .. 0.85
   2 ?   -3.1   0.1      0.65   5.8e+03      18      19 ..      28      29 ..      27      31 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.3e-06
  zf-ribbon_3  2 tvrCPnCGa.p 11
                 tv+CP+CG+ +
   EHU02339.1  7 TVNCPQCGKtV 17
                 89******977 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.65
  zf-ribbon_3 18 vC 19
                 +C
   EHU02339.1 28 FC 29
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 522.08
//
Query:       EHU02340.1  [L=247]
Description: uncharacterized DUF1342 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-77  258.9   0.6      4e-77  258.7   0.6    1.0  1  ZapD      Cell division protein


Domain annotation for each model (and alignments):
>> ZapD  Cell division protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.7   0.6   2.2e-81     4e-77       1     210 []      19     225 ..      19     225 .. 1.00

  Alignments for each domain:
  == domain 1  score: 258.7 bits;  conditional E-value: 2.2e-81
                 HHHHHHHHHHHHHTT--STTHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCTTT-TTS-HHHHHHHHHHHHHHHHHHHH--.STTHHHHC-H CS
        ZapD   1 LRLEqlfeqleefleedseadhhaalralfelldvleRadlksellkeLerqkqkLkalrenpgvdeealeelleeleqalsaLeaaegklgqslkede 99 
                 LR+E+l++ql+++   ++ a++ +++r + elld++eR+d+++ellkeLerq++kL+a+++ pgvd + +++l+++l++++  L++a+ ++gq+l+ed+
  EHU02340.1  19 LRVEFLIDQLHQVTPLENTATALTFFRLIGELLDIFERGDMRTELLKELERQQTKLRAWADVPGVDMSVVDALRDKLKAQSVLLNSAP-RMGQQLREDR 116
                 9***************************************************************************************.********** PP

                 HHHHHHHHHCSS----GCC-HHHHHHHTS-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC---EEEEECCCEEEEE-SS..--EEEEEEEGGG-EEE CS
        ZapD 100 lLssirqRlsipGgtcefDlPayhlWleqpaeerqqdleewleelapleealaliLkllResgefskvvaenGfyqqsleekaaqLlrvrldeelavyP 198
                 l++++rqRlsipGg+c+fDlP +h+Wl+ p+++r++++++w+e+l pl+++la++L+l+R+sg+++ +++ nGfyq+++e+  a+Llr++ld e+a+yP
  EHU02340.1 117 LIALVRQRLSIPGGCCSFDLPGLHIWLHLPQTTRDAQVTSWMETLIPLHSTLAMLLDLIRQSGTYRLQTSLNGFYQDNAEG--ADLLRLQLDIEDALYP 213
                 *********************************************************************************..**************** PP

                 EEEEETTEEEEE CS
        ZapD 199 eiSgnkyrlaiR 210
                 ++Sg+k+r+aiR
  EHU02340.1 214 QVSGHKSRFAIR 225
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2146.19
//
Query:       EHU02341.1  [L=205]
Description: dephospho-CoA kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-69  231.3   0.1    7.1e-69  231.0   0.1    1.0  1  CoaE             Dephospho-CoA kinase
    5.3e-05   23.5   2.5    0.00061   20.1   2.2    2.5  1  AAA_28           AAA domain
    8.8e-05   22.7   0.8    0.00058   20.0   0.8    2.3  1  AAA_33           AAA domain
    0.00024   21.7   0.6     0.0026   18.3   0.6    2.1  1  AAA_18           AAA domain
     0.0066   16.9   0.2      0.036   14.5   0.2    2.0  1  AAA_17           AAA domain
     0.0066   16.6   0.4        4.2    7.5   0.0    2.2  2  SKI              Shikimate kinase
     0.0094   15.2   0.2       0.06   12.6   0.0    2.1  2  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.035   13.8   0.1    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.021   14.5   0.1       0.49   10.1   0.0    2.1  2  AAA_24           AAA domain
      0.052   13.8   1.5       0.44   10.8   1.5    2.4  1  AAA_22           AAA domain
      0.056   12.8   0.3       0.11   11.8   0.1    1.5  2  ATPase           KaiC
       0.08   12.8   0.3       0.39   10.6   0.0    2.1  2  APS_kinase       Adenylylsulphate kinase
       0.15   12.4   4.3       0.76   10.1   4.3    2.0  1  AAA_16           AAA ATPase domain
       0.49   10.9   3.8        2.7    8.5   3.8    2.0  1  ABC_tran         ABC transporter
       0.49   10.5   3.6         13    5.8   3.6    2.7  1  Cytidylate_kin2  Cytidylate kinase-like family


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.0   0.1     6e-72   7.1e-69       2     175 ..       7     180 ..       6     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 231.0 bits;  conditional E-value: 6e-72
                 EEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH CS
        CoaE   2 ivgltGgiasGKstvanlfadlgvpivDaDlvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadpeekkaLnallhPlirreikkelak 100
                  v+ltGgi+sGKst+a++fa+ gv+i+DaD++Ar+vvepg++al++iv+++g++il+++G+L+R+ Lr+ +Fa p+ek++LnallhPli++++++  a+
  EHU02341.1   7 TVALTGGIGSGKSTIAAYFAAEGVTIIDADVIAREVVEPGTPALQAIVARYGDSILTDQGTLQRARLREIIFAAPDEKNWLNALLHPLINARTQQLKAQ 105
                 79************************************************************************************************* PP

                 --SSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HHHHHHH-SEEEE-.S CS
        CoaE 101 leskyvlldvPLLvEkqlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlseeerlaladvvldNds 175
                 ++s+yvl++vPLLvE+ql++ ++rvlv+d ++e+q++R++ard+vs e++k+i+aaQ+++++rla ad+++dN++
  EHU02341.1 106 ATSPYVLWVVPLLVENQLQHQADRVLVIDTDEETQLKRTLARDNVSPEQAKRILAAQATRQQRLACADDIIDNSG 180
                 *************************************************************************86 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   2.2   5.1e-07   0.00061       2     136 ..       8     157 ..       7     171 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 5.1e-07
      AAA_28   2 ivitGgestGKTtlleaLaargypvv..pEaareileeklakgedalpwvedllafaervleeqleee...aaaaankvlfcDrglldtlaYaraygg. 94 
                 +++tGg ++GK+t+++ +aa+g++++    +are++e ++   + + + + d +   ++ l+ ++ +e   aa +++++l     ll +l+ ar+    
  EHU02341.1   8 VALTGGIGSGKSTIAAYFAAEGVTIIdaDVIAREVVEPGTPALQAIVARYGDSILTDQGTLQRARLREiifAAPDEKNWLNA---LLHPLINARTQQLk 103
                 89**********************9995567999999999666655555567777777777776644433333355666533...33333333333331 PP

      AAA_28  95 ..eaeae.......leaaarekrydlvfllppapei..dddgeRr.edleerea 136
                   +++++       l++   +++ d+v++ ++++e+  +++ +R+  ++e++++
  EHU02341.1 104 aqATSPYvlwvvplLVENQLQHQADRVLVIDTDEETqlKRTLARDnVSPEQAKR 157
                 112333344443334445556667777777777766556666665346666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.8   4.8e-07   0.00058       4     125 ..      10     157 ..       8     173 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.8e-07
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt........dytrvldrlyqilnelarkalsagrnvildat..............nl 80 
                 l G  GsGKst a   + ++g+++++ d++ r +++ + + ++                   il +  +  +++ r +i+ a+              n 
  EHU02341.1  10 LTGGIGSGKSTIAAYFA-AEGVTIIDADVIAREVVEPGTPALQaivarygdS----------ILTDQGTLQRARLREIIFAAPdeknwlnallhpliN- 96 
                 67889********9766.99*********99999975555443333333330..........333333333344444555444444433333333221. PP

      AAA_33  81 srrerarflklarrlgvp......................vrivvvetdeetlkeRlakRaang...ddr 125
                  +r+++ +         +                      +r++v++tdeet  +R+ +R + +    +r
  EHU02341.1  97 -ARTQQLKA--------QatspyvlwvvpllvenqlqhqaDRVLVIDTDEETQLKRTLARDNVSpeqAKR 157
                 .11111111........111112233333444455555559*******************9987422233 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.6   2.2e-06    0.0026       1     121 [.       8     155 ..       8     165 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.2e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...................................gvnlrdvakenglllevdpealdeskrldedkldklldal 64 
                 ++ltG +G+GK+t+a + + ++ +                                   g+  r  ++e     ++++++l+  +   +          
  EHU02341.1   8 VALTGGIGSGKSTIAAYFAAEG-VtiidadviarevvepgtpalqaivarygdsiltdqGTLQRARLREIIFAAPDEKNWLNALLHPLI---------- 95 
                 689***************9995.445888777777777776666666444444444443333333333333333333333333333333.......... PP

      AAA_18  65 eenss.........aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeeakik 121
                     +         a      +v+  ++++ ++++a d++  v+++++e+ l+R  +R++ +++++
  EHU02341.1  96 ----NartqqlkaqATSPYVLWVVPLLVENQLQHQA-DRV-LVIDTDEETQLKRTLARDNVSPEQA 155
                 ....13444444444455677788888888888855.578.9****************99988876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2     3e-05     0.036       1     123 [.      11     148 ..      11     160 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-05
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHC....TSHHHHHHHHHHHHHHHHHHHH.HSSE...EEEEE-SEEEETTEEEES CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgglakardemr....klpleekkelqkeaaekiaeea.kkkg...vlvdghprikeqagfldg 91 
                 +Gg GsGK+t+++  +   g+t++   d++  e+ + g  +a +++     +  l ++  lq+   ++i  +a ++k+   +l+  hp i+++ ++l+ 
  EHU02341.1  11 TGGIGSGKSTIAAYFAA-EGVTIID-ADVIAREVVEPGT-PALQAIVarygDSILTDQGTLQRARLREIIFAApDEKNwlnALL--HPLINARTQQLKA 104
                 69**********66655.59****9.6888888888874.33333332333667777778888888888777656666222344..7877766665543 PP

                 SHHHH..........HHHH....SEEEEEE--HHHHHHHHHHHT CS
      AAA_17  92 lpkev..........leel..kpdaiilleadpeeilerrlkdr 123
                                +++l  + d ++++++d+e+ l+r l ++
  EHU02341.1 105 QATSPyvlwvvpllvENQLqhQADRVLVIDTDEETQLKRTLARD 148
                 33211223333433324441145889999999999999999875 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0035       4.2       2      30 ..      15      42 ..      14      60 .. 0.85
   2 !    7.4   0.2    0.0036       4.3     100     147 ..     121     167 ..      94     183 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0035
                TSSHHHHHHHHHHHHTSEEEEHHHHHHHH CS
         SKI  2 GaGKstvGkllAkklglefiDlDeliekr 30
                G+GKst++  +A + g++ iD+D +  ++
  EHU02341.1 15 GSGKSTIAAYFAAE-GVTIIDADVIAREV 42
                9**********986.89999999876655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0036
                 HHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHH CS
         SKI 100 erlkadkeRPllqekskeeelleelaereplyeeaadvvvdeseeske 147
                 + l+++ +R l+ + ++e++l+++la+ + + e+a+ ++ ++++++ +
  EHU02341.1 121 NQLQHQADRVLVIDTDEETQLKRTLARDNVSPEQAKRILAAQATRQ-Q 167
                 4588999999999999999999999944444555555444444444.2 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.1e-05      0.06      14      47 ..       3      31 ..       1      57 [. 0.86
   2 ?    0.5   0.0      0.26   3.1e+02     176     194 ..     124     142 ..     117     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.1e-05
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdelerqgnvv 47
                ++P  + l G+ G+GKs++a+++++e      v 
  EHU02341.1  3 DTPYTVALTGGIGSGKSTIAAYFAAEG-----VT 31
                7899******************99884.....44 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
  Zeta_toxin 176 ekqldrvkikdrdgktvly 194
                 ++q+drv ++d d++t+l 
  EHU02341.1 124 QHQADRVLVIDTDEETQLK 142
                 5577888877777777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     3e-05     0.035      25      38 ..       8      21 ..       2      26 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3e-05
      AAA_29 25 tlltGpsGsGKSTl 38
                + ltG +GsGKST+
  EHU02341.1  8 VALTGGIGSGKSTI 21
                689**********8 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00041      0.49       2      32 ..       5      36 ..       4      53 .. 0.89
   2 ?    2.6   0.0     0.081        96     157     187 ..     120     149 ..      96     167 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00041
      AAA_24  2 klkiliyGpsgiGKTtlakel.gpkplfidte 32
                ++ ++++G  g+GK+t+a+ +  + + +id +
  EHU02341.1  5 PYTVALTGGIGSGKSTIAAYFaAEGVTIIDAD 36
                6899*****************88888888876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.081
      AAA_24 157 anelkeevDlvlranlkredkvgervlktsk 187
                  n+l++++D vl ++ ++e+ + +r+l +++
  EHU02341.1 120 ENQLQHQADRVLVIDTDEET-QLKRTLARDN 149
                 67888888888888877555.3444444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   0.00037      0.44       4      98 ..       4     134 ..       1     169 [. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00037
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..................................erpevvfvtlpsstsskdllrellralglel 68 
                 t + +++tG  G+GK+t ++ ++ + +  ++a+                                   + +e++f  + +++ +  ll+ l +a +++l
  EHU02341.1   4 TPYTVALTGGIGSGKSTIAAYFAAEGVTIIDADViarevvepgtpalqaivarygdsiltdqgtlqraRLREIIFAAPDEKNWLNALLHPLINARTQQL 102
                 5667899****************9986555554477777777777766655555555555555554422222222222222233344555555555555 PP

      AAA_22  69 ka...erlsseellealeqalraravielliiD 98 
                 ka   ++  +  +  ++e++l+++a+ ++l+iD
  EHU02341.1 103 KAqatSPYVLWVVPLLVENQLQHQAD-RVLVID 134
                 55333333333333455566666666.666666 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.2e-05      0.11      21      49 ..       7      35 ..       4      44 .. 0.87
   2 ?   -2.9   0.0       2.9   3.5e+03     196     196 ..     141     141 ..     120     169 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-05
      ATPase 21 vvlitGepGtGKtifalqFlikgaekyge 49
                +v +tG+ G+GK+++a+ F+ +g+   + 
  EHU02341.1  7 TVALTGGIGSGKSTIAAYFAAEGVTIIDA 35
                6899*******************876655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.9
      ATPase 196 l 196
                 l
  EHU02341.1 141 L 141
                 1 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00032      0.39       2      23 ..       5      26 ..       4      63 .. 0.90
   2 ?   -0.1   0.1      0.63   7.5e+02      21      53 ..     118     149 ..     114     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
                -EEEEEESSTTSSHHHHHHHHH CS
  APS_kinase  2 gvvvwltGlsgsGKstianale 23
                + +v ltG  gsGKstia  ++
  EHU02341.1  5 PYTVALTGGIGSGKSTIAAYFA 26
                67999*************8765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.63
                 HHHHHHHHTT--EEEEEHHHHTTTTTTT--SSH CS
  APS_kinase  21 alekkLvekgisvylLdGdnvRhgLnkdLgfse 53 
                  +e++L+++  +v ++d d+  ++L++ L+ ++
  EHU02341.1 118 LVENQLQHQADRVLVIDTDE-ETQLKRTLARDN 149
                 67889999999999999886.455666665544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.3   0.00064      0.76      24     155 ..       5     186 ..       1     202 [. 0.53

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00064
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala................ 106
                 p  v l+G  G+GKs+++  ++     +g+  + ++    e   p  + +qa+ + ++   +l+++ + ++++ re + +a                  
  EHU02341.1   5 PYTVALTGGIGSGKSTIAAYFAA----EGVTIIDADVIAREVVEPGTPALQAIVA-RYGDSILTDQGTLQRARLREIIFAAPDeknwlnallhplinar 98 
                 56799*************99995....3322333333333222233446666644.6666666665555555555544444445555666666666665 PP

      AAA_16 107 ......................................avpelagaea..srllellkrll.allsrderplvlvlDdlqwadeaslqll 155
                                                       +  +l++ +a  +   e+ kr+l a+++r ++  + + Dd+ +   a+ ++l
  EHU02341.1  99 tqqlkaqatspyvlwvvpllvenqlqhqadrvlvidtdEETQLKRTLArdNVSPEQAKRILaAQATR-QQ-RLACADDIIDNSGAPENAL 186
                 5555555555555555555555555555555555544433333333335555555555555444444.33.4555555555555555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8    0.0023       2.7      13      34 ..       7      28 ..       5     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0023
                EEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagl 34
                +va++G  G+GKSt+++ +a +
  EHU02341.1  7 TVALTGGIGSGKSTIAAYFAAE 28
                699************9998865 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.6     0.011        13       2     150 ..       8     163 ..       7     170 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
  Cytidylate_kin2   2 ITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeev..eevde.rsrlssflskllaarvagdtl........deklddelfea 84 
                      +++++  Gsg++ti+   A + g+ ++d ++i++ + e g +  ++  +++ +   + +++l+++  ++     +           l + l +a
       EHU02341.1   8 VALTGGIGSGKSTIAAYFAAE-GVTIIDADVIAREVVEPGTPALQAivARYGDsILTDQGTLQRARLRE---IIFaapdeknwLNALLHPLINA 97 
                      678889999999999999998.79999999999888888888766656666664222223333322222...2223333333322222223444 PP

  Cytidylate_kin2  85 qervirela.aeesvVivGRgadliLkdrpnvlrvfltapledrvkrvaereglseeearekiketD 150
                      +++ +++ a +    ++v    ++ L+++ +     ++ ++e  +kr  +r ++s+e+a++ + ++ 
       EHU02341.1  98 RTQQLKAQAtSPYVLWVVPLLVENQLQHQADR-VLVIDTDEETQLKRTLARDNVSPEQAKRILAAQA 163
                      44444444422223445666666666664433.3447888888888888888888888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 1565.05
//
Query:       EHU02342.1  [L=346]
Description: GMP reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-77  260.8   0.3    2.2e-77  260.4   0.3    1.1  1  IMPDH     IMP dehydrogenase / GMP reductase domain
    0.00089   18.4   1.2     0.0017   17.5   1.2    1.5  1  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.3   2.5e-81   2.2e-77       2     336 ..       9     338 ..       8     342 .. 0.91

  Alignments for each domain:
  == domain 1  score: 260.4 bits;  conditional E-value: 2.5e-81
                 --GGGEEEE---B-S-GG.GSB--EESS.TTEEES...SSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTSTTSXBXTTSXB-E CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH   2 ltfddvllvpaksevlpk.evdlktklt.kkikln...iPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrspnaakdekgrllv 95 
                 l f dvl+ p++s+++++ +v+l+ ++t k+  l    +P+++a+mdtv   +mA ala    ++ +hk+ s+e+  + v++v  s           +v
  EHU02342.1   9 LGFKDVLIRPKRSTLKSRsQVELDRSFTfKHSGLDwrgVPVIAANMDTVGTFSMAEALASFNVLTAVHKHYSVEDWRTFVQRVPASV--------LKYV 99 
                 78**************998********965555543359********************************************8332........3345 PP

                 EEEE-SSTTHHHHHHHHHH..TT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---H CS
                 xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  96 gaavgvkedalervkalve..agvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpq 192
                   + g+++ +l+++ a+++   ++ ++++d+a+g+se+ ++ +k+ ++ ++  ++ aGnv+t e +++Li  gad+vkvGiGpGs+Cttrv +gvG pq
  EHU02342.1 100 MVSTGTSDADLTKLIAVMAicDDLQFICIDVANGYSEHFVDFLKRAREIFPGKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQ 198
                 55666666666666655541167889************************9999********************************************* PP

                 HHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH..-SS-TTS-..--SS-SBE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       IMPDH 193 ltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkk..gskdryfqkkeklvpeGv 289
                 l+Av+e+a+aa+    ++++DGG    gdi+kA+  Gad+vmlG +la+ +E+ g+++  +g+++  + Gm+s +amk+  gs  +y        +eG 
  EHU02342.1 199 LSAVIECADAAHGLSGQIVSDGGCAVPGDIAKAFGGGADFVMLGGMLAAHDECEGRITEENGERFMLFYGMSSESAMKRhaGSVAKY------RAAEGK 291
                 *****************************************************************************6533577777......579*** PP

                 EEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 290 egrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvrita 336
                   ++p +g+v+e+++ ++gglrs+++y+Ga+ ++el ++++f+r+++
  EHU02342.1 292 TVKLPLRGPVEETLRDILGGLRSACTYVGAERLKELTKRTTFIRVAE 338
                 ********************************************986 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.2   1.9e-07    0.0017     258     304 ..     199     246 ..     136     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-07
                 HHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHH CS
      FMN_dh 258 idvLpeiveavgg.rievlvDgGirrGsDvlkAlalGAdavllGRpfl 304
                 +++  e+++a+ g + +++ DgG     D++kA   GAd+v+lG  ++
  EHU02342.1 199 LSAVIECADAAHGlSGQIVSDGGCAVPGDIAKAFGGGADFVMLGGMLA 246
                 6677788888888689****************************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2555.00
//
Query:       EHU02343.1  [L=399]
Description: PilC family type IV fimbrial assembly protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-59  198.3   5.0    1.2e-30  106.0   0.2    2.4  3  T2SSF     Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.2   6.7e-35   1.2e-30       1     125 []      64     187 ..      64     187 .. 0.99
   2 ?   -4.2   0.0      0.86   1.5e+04      62      74 ..     205     217 ..     199     220 .. 0.53
   3 !   94.3   0.4   2.8e-31     5e-27       5     125 .]     272     390 ..     268     390 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 6.7e-35
                 HHHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   1 flrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkll 99 
                 f+rqlatll+aG+pl ++L+lla+ + + +++  ++++ + +  G+++s+al+++p+ +fp+l+++l ++ge +g+L+  +e+la+++ ++++lr+k+l
  EHU02343.1  64 FIRQLATLLKAGLPLSQSLDLLASGHPHAAWRALMQALQHHVLRGEPFSQALRQWPE-VFPPLFAALMAVGELTGQLDICCEQLAQQQTRQQHLRAKVL 161
                 9*******************************************************6.***************************************** PP

                 HHHHTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 100 aallepllllvvallvllillaillp 125
                 +al +pl++l+val+v   +l+++lp
  EHU02343.1 162 KALRYPLFILFVALAVTCGMLLFVLP 187
                 ************************98 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.86
                 HHHHHHHHHHHHH CS
       T2SSF  62 elvvqlirageeg 74 
                   v++l+ a ++g
  EHU02343.1 205 AAVITLSDALQAG 217
                 4444444444444 PP

  == domain 3  score: 94.3 bits;  conditional E-value: 2.8e-31
                 HHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   5 latllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkllaall 103
                 l +  +aG++l++ L++++ + +++ +++++++i + +++G +l++al ++p   f++l++qlir+gee+g L+ +L rlae++e+e  +r+++laa+l
  EHU02343.1 272 LQLTQQAGLTLLQELDAACVTLSSRLWQDAIRAIQQHIAQGNPLHQALHSHP--LFTPLCRQLIRVGEESGALDVMLARLAEWHERETLTRADNLAASL 368
                 667779*********************************************9..9******************************************** PP

                 TTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 104 epllllvvallvllillaillp 125
                 ep++++v++++v+ +++a++lp
  EHU02343.1 369 EPVMMVVIGGIVGTLVIAMYLP 390
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2834.05
//
Query:       EHU02344.1  [L=460]
Description: PilB family type IV fimbrial assembly ATPase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-77  260.8   0.1    1.4e-77  260.4   0.1    1.1  1  T2SSE        Type II/IV secretion system protein
     0.0063   16.3   0.1      0.022   14.5   0.0    1.9  2  AAA_30       AAA domain
     0.0097   16.3   0.9      0.024   15.0   0.1    2.2  2  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
       0.01   16.1   0.1      0.039   14.2   0.1    1.9  2  AAA_22       AAA domain
      0.012   15.5   0.0      0.022   14.7   0.0    1.3  1  Microtub_bd  Microtubule binding
      0.055   13.8   0.3       0.18   12.1   0.1    1.9  2  AAA_19       AAA domain
      0.059   12.3   0.0      0.091   11.7   0.0    1.2  1  Kinesin      Kinesin motor domain
      0.072   12.7   0.1       0.17   11.4   0.1    1.6  1  AAA_25       AAA domain
       0.13   12.1   0.1       0.32   10.7   0.0    1.6  2  AAA_11       AAA domain
       0.16   11.7   0.1       0.36   10.6   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
       0.17   11.9   0.0       0.35   10.9   0.0    1.4  1  ResIII       Type III restriction enzyme, res subunit
       0.25   10.9   0.0       0.66    9.5   0.0    1.6  2  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.1   9.5e-81   1.4e-77       6     272 ..      92     354 ..      86     355 .. 0.97

  Alignments for each domain:
  == domain 1  score: 260.4 bits;  conditional E-value: 9.5e-81
       T2SSE   6 eallddekvsdihvekper.vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp....ekgvrlrvvllPvvagealviR..k 97 
                 +a  +++++sdih+e++++ +++r r+dg +l++++   + + ++l++r+++la+ldi+e+r++qd++++    ++ +++r+++l +  ge++v+R  +
  EHU02344.1  92 QA--AQRRASDIHIEPYQHsLRIRLRIDG-VLHPLPLQRDIQPAALLARLKILAGLDIAERRLPQDGQFSheidGQVASFRLSTLLTQGGEKAVVRllQ 187
                 34..599**********************.****************************************99999999********************* PP

       T2SSE  98 ksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtfadllraaL 196
                 ++ + l+ld lg  +a    ++++l+++   +glilv+G+TgsGKt +ly+ l+ in+  ++i+ vEDp+Ei l g+nq+q+n+k  +++f+++lra+L
  EHU02344.1 188 REGATLSLDSLGLPAAPLRLLKAALAQP---QGLILVTGPTGSGKTFTLYSGLSAINQPGKNICSVEDPIEIPLPGINQTQINPK-YGLDFNRVLRALL 282
                 ****************************...******************************************************.************* PP

       T2SSE 197 RlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgaeveaaelkssilavvdivvrlvrk 272
                 R++PD+im+GEiRd et+ei +kA++TGHl+ lsTlH+ns+a++l+rL+q+g  ++ + l s ++++  i++rlvr+
  EHU02344.1 283 RQDPDVIMIGEIRDGETAEIaVKAAQTGHLV-LSTLHTNSTAETLTRLRQMG--IPGYLLGSALRLI--IAQRLVRR 354
                 *******************************.********************..*************..******98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-05     0.022       9      49 ..     207     247 ..     203     250 .. 0.86
   2 ?   -2.4   0.0       2.2   3.3e+03     121     154 ..     290     317 ..     273     332 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkalreaweaaggrv 49 
                 +++a+l++++ + ++tGp G+GKt++l +   a+++ g+++
  EHU02344.1 207 LLKAALAQPQGLILVTGPTGSGKTFTLYSGLSAINQPGKNI 247
                 6889999********************98888888777666 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.2
      AAA_30 121 lvGDerQlasVeaGgvlrdlveaagigtaeLtev 154
                 ++G       +  G++ +  v+aa++g+  L+++
  EHU02344.1 290 MIGE------IRDGETAEIAVKAAQTGHLVLSTL 317
                 4443......344555555555555555555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.2   3.2e+03     117     127 ..      80      90 ..      10     141 .. 0.60
   2 !   15.0   0.1   1.6e-05     0.024      15      51 ..     207     243 ..     203     356 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.2
      AAA_16 117 srllellkrll 127
                 ++  ++ ++ll
  EHU02344.1  80 ESAIDTASQLL 90 
                 33333333333 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.6e-05
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 +l+++ ++  +l+l++G+ G+GK+  + + l a+++ 
  EHU02344.1 207 LLKAALAQPQGLILVTGPTGSGKTFTLYSGLSAINQP 243
                 55555544449*************9997777777776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.6e-05     0.039       4      22 ..     215     233 ..     212     251 .. 0.91
   2 ?   -3.2   0.0       6.2   9.2e+03      80     100 ..     275     294 ..     267     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
      AAA_22   4 tagilvvtGesGtGKTtll 22 
                  +g+++vtG++G+GKT++l
  EHU02344.1 215 PQGLILVTGPTGSGKTFTL 233
                 689*************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.2
      AAA_22  80 ealeqalraravielliiDEa 100
                 +++ +al +++   +++i E+
  EHU02344.1 275 NRVLRALLRQDP-DVIMIGEI 294
                 678888888888.99998875 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.022      75     107 ..     208     243 ..     205     258 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                  HHHHHTT--EEEEEEES................... CS
  Microtub_bd  75 vqsaldgynvcifaygqTGsGKtyTmeg...eeeea 107
                  ++ al + +  i+ +g TGsGKt+T+ +     +++
   EHU02344.1 208 LKAALAQPQGLILVTGPTGSGKTFTLYSglsAINQP 243
                  667777888889**************9855444444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00012      0.18       4      34 ..     211     240 ..     208     249 .. 0.80
   2 ?   -2.4   0.0       3.8   5.6e+03     119     137 ..     275     293 ..     272     295 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivall 34 
                 a+ a +++++lvt++ G+GKT +l   ++ +
  EHU02344.1 211 AL-AQPQGLILVTGPTGSGKTFTLYSGLSAI 240
                 33.88999***************98766655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.8
      AAA_19 119 yrLlkallgekkklllvGD 137
                 +r+l+all ++ +++++G 
  EHU02344.1 275 NRVLRALLRQDPDVIMIGE 293
                 78999***99977999996 PP

>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.1e-05     0.091      66      94 ..     207     235 ..     202     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.1e-05
                 HHHHHHTTSEEEEEEEESTTSSHHHHHTB CS
     Kinesin  66 lvesvleGynatifaYGqtgsGKTyTmeg 94 
                 l++++l   +++i+  G tgsGKT+T+  
  EHU02344.1 207 LLKAALAQPQGLILVTGPTGSGKTFTLYS 235
                 67889999999***************965 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00012      0.17      17      52 ..     200     235 ..     186     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
      AAA_25  17 apppprrwlvkgllpagelallaGapgtGKttlald 52 
                  p +p+r l   l   ++l+l++G++g+GKt+ +++
  EHU02344.1 200 LPAAPLRLLKAALAQPQGLILVTGPTGSGKTFTLYS 235
                 46678887777899999***************9876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.32      10      43 ..     208     242 ..     202     280 .. 0.78
   2 ?   -2.5   0.0       2.4   3.6e+03     186     211 ..     300     326 ..     290     332 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
      AAA_11  10 iksalsese.itliqGPPGtgKTktivellsqlls 43 
                 +k al +++ + l+ GP G+gKT+t+ + ls++++
  EHU02344.1 208 LKAALAQPQgLILVTGPTGSGKTFTLYSGLSAINQ 242
                 566777777799***************99999963 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.4
      AAA_11 186 esleeevldeaeivltTlsga.gskll 211
                 +++  +  ++ ++vl+Tl++  ++++l
  EHU02344.1 300 AEIAVKAAQTGHLVLSTLHTNsTAETL 326
                 556667778889999999875144555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00024      0.36      20      36 ..     214     230 ..     209     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
      AAA_29  20 dlkgatlltGpsGsGKS 36 
                 +++g +l+tGp+GsGK+
  EHU02344.1 214 QPQGLILVTGPTGSGKT 230
                 578899**********7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00023      0.35      24      66 ..     216     256 ..     195     335 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
                 TSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHH CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkeekflflvprksl 66 
                 +  +l+  +TG+GKT+++++   ++ + gk  ++  + + +++
  EHU02344.1 216 QGLILVTGPTGSGKTFTLYSGLSAINQPGK--NICSVEDPIEI 256
                 44567999**********988888777655..55555555554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00044      0.66      29      58 ..     212     241 ..     204     250 .. 0.77
   2 ?   -2.9   0.0       2.7     4e+03      23      52 ..     275     304 ..     271     331 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00044
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkld 58 
                 l + +  +l++GptG+GKt ++ + l++++
  EHU02344.1 212 LAQPQGLILVTGPTGSGKTFTLYSGLSAIN 241
                 556667799***********9998666665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.7
       AAA_7  23 syllelllknkkpvllvGptGtGKtviikd 52 
                 + +l+ ll+++  v+++G+   G t+ i  
  EHU02344.1 275 NRVLRALLRQDPDVIMIGEIRDGETAEIAV 304
                 567888999999999999887777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3344.49
//
Query:       EHU02345.1  [L=149]
Description: putative major pilin subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-09   35.9   1.2    6.2e-09   35.1   1.2    1.5  1  N_methyl  Prokaryotic N-terminal methylation motif
    8.1e-05   23.5   0.2    9.8e-05   23.2   0.2    1.1  1  Pilin     Pilin (bacterial filament)
     0.0049   17.1   0.1      0.035   14.4   0.0    2.0  2  DUF2499   Protein of unknown function (DUF2499)


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   1.2     1e-12   6.2e-09       1      26 [.       1      26 [.       1      27 [. 0.94

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1e-12
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaa 26
                m+ q+GFTL+El++++ I+ail+a+ 
  EHU02345.1  1 MHYQQGFTLVELMIVVGIVAILSAIG 26
                789********************986 PP

>> Pilin  Pilin (bacterial filament)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   1.6e-08   9.8e-05       2      97 ..      36     129 ..      35     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHHHHHHHHHHHCCCSSSCTCCCCCTTBSTCSCCTCEEEEECCCEECCEEEEEECCCSSTCCTTEEEEEEEECTTSCEEE..EEEES.- CS
       Pilin   2 RaqvsealalasglKtavaeaalnegktpttaaadiGlasstaicgvisvtveaatggtitatfggnaaakikgktltltrtadsgsgkW..tCgta.t 97 
                 Ra ++  l ++ + Ktav+  a++ g + + +a + G+++ t+++ v+++tv +   g it t +++ ++ ++ + l ++ +++ g+ +W  tC+++ t
  EHU02345.1  36 RAALTDMLQTMVPFKTAVELCAIERGGPEQCQAGQRGIPQGTTSRYVSAITVVN---GMITLTGQESLNG-LSVEMLPVWDSNE-GTLVWqrTCTSTnT 129
                 89999*************55555666666666666********999******99...99****9999877.9999999999988.99***444665442 PP

>> DUF2499  Protein of unknown function (DUF2499)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.12     7e+02      24      47 ..      27      50 ..       7      59 .. 0.65
   2 !   14.4   0.0   5.9e-06     0.035      16      57 ..      80     121 ..      73     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
     DUF2499 24 iwrygevsgrkelrvlalamlPal 47
                +  y ++ +r +l+ +  +m+P  
  EHU02345.1 27 LPAYQNYLQRAALTDMLQTMVPFK 50
                345777777788888888888865 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.9e-06
     DUF2499  16 EwllAilliwrygevsgrkelrvlalamlPalvsalcaltwH 57 
                  ++ Ai+++  + +++g+++l++l++ mlP + s    l+w 
  EHU02345.1  80 RYVSAITVVNGMITLTGQESLNGLSVEMLPVWDSNEGTLVWQ 121
                 6899****************************9988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1146.55
//
Query:       EHU02346.1  [L=343]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-23   81.2   0.0    9.9e-23   80.5   0.0    1.3  1  DDE_3         DDE superfamily endonuclease
    1.1e-10   41.0   1.0    3.6e-09   36.2   0.1    3.1  3  HTH_23        Homeodomain-like domain
    4.2e-09   36.9   1.1    2.8e-08   34.3   0.3    2.5  2  HTH_32        Homeodomain-like domain
    3.9e-07   30.0   1.2    1.1e-06   28.6   0.3    2.0  2  HTH_29        Winged helix-turn helix
    3.1e-06   26.7   5.1    4.4e-06   26.2   0.3    2.9  3  HTH_33        Winged helix-turn helix
    1.4e-05   25.1   0.3     0.0002   21.4   0.2    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.8   0.2      0.061   13.8   0.2    1.4  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481
      0.054   13.3   0.6       0.16   11.8   0.1    2.0  2  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   4.4e-26   9.9e-23       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 4.4e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU02346.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + ++++++ +s 
  EHU02346.1 276 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETIIRNHQCSSM 316
                 *9.9******************************98887776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.6e-12   3.6e-09       5      50 .]      28      73 ..      24      73 .. 0.94
   2 ?    1.8   0.0       0.1   2.3e+02      30      38 ..     128     136 ..     126     140 .. 0.88
   3 ?   -1.9   0.1       1.4   3.2e+03      28      40 ..     266     277 ..     264     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.6e-12
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU02346.1 28 ARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 73
                79***********************************88*****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU02346.1 128 HASTIRRWL 136
                 789*****8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU02346.1 266 HKSRETL-RWLKA 277
                 6789999.79986 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.62   1.4e+03      34      66 ..      11      45 ..       6      47 .. 0.62
   2 !   34.3   0.3   1.2e-11   2.8e-08       2      73 .]      57     136 ..      56     136 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.62
      HTH_32 34 rariiallreep..rWsprqlaarlaeregvkvSh 66
                ++r+ + + ++   + ++r+l a l  ++g++vSh
  EHU02346.1 11 ERRLMQKTIHKTkdKNHARRLTAMLMLHRGDTVSH 45
                33444444333234668999999996666899998 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.2e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU02346.1  57 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 136
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3   4.8e-10   1.1e-06       1      55 [.      30      82 ..      30      83 .. 0.95
   2 ?   -1.4   0.0       1.1   2.5e+03      26      33 ..     129     136 ..     127     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 4.8e-10
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                R++a l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU02346.1 30 RLTAMLMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 82
                8999*******9.9********************************99.699985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
      HTH_29  26 rrtvyrwl 33 
                  +t++rwl
  EHU02346.1 129 ASTIRRWL 136
                 58*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.3     2e-09   4.4e-06       3      52 ..     108     157 ..     106     161 .. 0.95
   2 ?    1.4   0.1      0.11   2.5e+02      29      42 ..     241     254 ..     235     255 .. 0.86
   3 ?   -3.5   0.1       3.7   8.3e+03      25      33 ..     314     322 ..     314     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU02346.1 108 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 157
                 69**********************************************97 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU02346.1 241 RLLKHLKATYRRAK 254
                 9**********996 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.7
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU02346.1 314 SSMWQLLKK 322
                 689****96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   9.1e-08    0.0002       1      52 []      29      81 ..      29      83 .. 0.93
   2 ?    0.9   0.0      0.22     5e+02      25      33 ..     128     136 ..     124     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.1e-08
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                +Rl++++ l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU02346.1 29 RRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 81
                69*******************************************96437765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU02346.1 128 HASTIRRWL 136
                 789*****8 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   2.7e-05     0.061      12      68 ..      27      84 ..      18      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  LZ_Tnp_IS481 12 lGrvllvrrvvedrrtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                  + r l    +++   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU02346.1 27 HARRLTAMLMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 84
                  666666666777788***********************99999999764256777766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05      0.16      11      39 ..      31      59 ..      28      62 .. 0.87
   2 ?   -2.0   0.0       1.4   3.2e+03      33      39 ..     128     134 ..     128     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G +++ +Ar L++++s+I R
  EHU02346.1 31 LTAMLMLHRGDTVSHVARTLCCARSSIGR 59
                55667899*******************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU02346.1 128 HASTIRR 134
                 78***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2733.94
//
Query:       EHU02347.1  [L=298]
Description: quinolinate phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-58  197.5   0.2    1.7e-58  197.2   0.2    1.1  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
    8.3e-26   89.9   0.0    3.9e-24   84.5   0.0    2.8  3  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.062   13.1   0.0    1.7  1  Biotin_lipoyl_2  Biotin-lipoyl like
        0.1   11.6   0.2       0.15   11.1   0.2    1.2  1  IMPDH            IMP dehydrogenase / GMP reductase domain
       0.14   12.1   0.0       0.24   11.3   0.0    1.3  1  DUF816           Baculovirus protein of unknown function (DUF


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   0.2   4.6e-62   1.7e-58       1     169 []     130     294 ..     130     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.2 bits;  conditional E-value: 4.6e-62
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevlea 99 
                 +At  +r+v+ ++++++++ldTRkt+Pglr + kyAvl+GGg+nhrlgLsd++lik+nhi+a gsi++a++++ +  ++   +evevesl+elee+l+a
  EHU02347.1 130 VATEVSRYVALLEGTQTQLLDTRKTLPGLRTALKYAVLCGGGSNHRLGLSDAFLIKENHIIASGSIRQAIEKAFWLYPDVP-VEVEVESLKELEEALAA 227
                 8****************************************************************************9996.***************** PP

                 T-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C 100 eadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                  adiimLDnfs + +++av+    +++r l+evSG+vt+ +++++a++gvd++svgalt++v+alD+s++
  EHU02347.1 228 AADIIMLDNFSLQAMREAVK---ITAGRALLEVSGNVTETTIRDIAETGVDYVSVGALTKHVRALDLSMR 294
                 ********************...568899***************************************95 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   1.1e-27   3.9e-24       4      89 .]      43     128 ..      41     128 .. 0.97
   2 ?   -1.0   0.0      0.53   1.9e+03      24      53 ..     184     216 ..     179     224 .. 0.60
   3 ?    1.7   0.0     0.074   2.6e+02      45      72 ..     236     262 ..     218     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1.1e-27
                 --HHHHHHGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHH.TTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N   4 gDlttealipeekkakaeiiakeegvvaGlevaeevfell.pglevellvkDGervekgdvlleieGnarallsaERvaLnllqrlS 89 
                 +D+t+ +l+p++ +a+a++i++e+gv++G  ++eevf++l  +++ +++v+DG++v + + l+e+ G+ar ll+aER+ Ln++q lS
  EHU02347.1  43 RDITA-QLLPADSRAHAQVITREAGVFCGKRWVEEVFNQLgAHTALTWHVEDGQHVIPDQPLFEVDGPARLLLTAERTTLNFVQTLS 128
                 79***.9*********************************8888999*************************************998 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.53
                 ESSSEEE-.SH..HHHHHHHHHHTTTEEEESS- CS
   QRPTase_N  24 akeegvva.Gl..evaeevfellpglevellvk 53 
                  ke+ ++a G   +++e+ f l+p++ ve++v+
  EHU02347.1 184 IKENHIIAsGSirQAIEKAFWLYPDVPVEVEVE 216
                 455555551432256666777778888887766 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.074
                 TTEEEESS-TT-EEETTEEEEEEEEEHH CS
   QRPTase_N  45 glevellvkDGervekgdvlleieGnar 72 
                 +++ +++ ++  ++++g  lle++Gn+ 
  EHU02347.1 236 NFSLQAM-REAVKITAGRALLEVSGNVT 262
                 5555555.89999************985 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.7e-05     0.062      15      37 ..      88     110 ..      85     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
  Biotin_lipoyl_2  15 qlnVkdGqrVkaGdvLaelDsra 37 
                      +++V+dGq+V   + L+e D +a
       EHU02347.1  88 TWHVEDGQHVIPDQPLFEVDGPA 110
                      69******************775 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.1e-05      0.15      99     173 ..     211     280 ..     185     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
                 E-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  99 vgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvG 173
                 v+v+ ++l+++++ ++a +d++++d      + + eavk    ++  +  ++Gnv t+  +++++e+g+d v vG
  EHU02347.1 211 VEVEVESLKELEEALAAAADIIMLDNFS--LQAMREAVKITAGRA--LLEVSGNV-TETTIRDIAETGVDYVSVG 280
                 566667788899999999*******754..444455555444444..5679***8.6789**************9 PP

>> DUF816  Baculovirus protein of unknown function (DUF816)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.7e-05      0.24      18      74 ..     183     240 ..     175     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.7e-05
      DUF816  18 lidkaellv.anvleivekaidkykeePtdknykylkklfdkikylideidekdferr 74 
                 li+++++++ + +++ +eka   y + P +++ + lk+l + +    d i   +f  +
  EHU02347.1 183 LIKENHIIAsGSIRQAIEKAFWLYPDVPVEVEVESLKELEEALAAAADIIMLDNFSLQ 240
                 9*****996379**************************99988888888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2474.31
//
Query:       EHU02348.1  [L=184]
Description: N-acetyl-anhydromuranmyl-L-alanine amidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-29  102.3   0.0      3e-29  102.1   0.0    1.1  1  Amidase_2  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.7e-33     3e-29      18     126 .]      52     167 ..      24     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 1.7e-33
                 HHHHHHHHHHSHHHHTTTS..S-SEEE-SSSSEEESS-TTCEESSSSS......EHCHHGEEEEEESSTTEEESCHHHHHHHHHHHHHHHHHHHHTEEE CS
   Amidase_2  18 aagalavaaaeyaastngs.igyhylidkdGtiyqlvdengrawHagd......kggNdnsigIElvgngdgkeppteaqyealakLvaallkrygipp 109
                 ++g+l + a++y+a++++  + +h+li++dG+i+q+v++++rawHag       +++Nd sigIEl+g+    ep+teaqy+al +++++ll++y ++p
  EHU02348.1  52 FTGTLPADAHPYFAEIAHLrVAAHCLIRRDGEIVQYVPFDKRAWHAGIsqfegrENCNDFSIGIELEGTD--IEPYTEAQYAALHQVTQTLLAHYPLTP 148
                 55556667889999877773449**********************************************7..**************************9 PP

                 GGGEEEHHHH...TB-TTCT CS
   Amidase_2 110 drrvvgHsdi...rktdPgp 126
                 +r ++gHsdi   rktdPgp
  EHU02348.1 149 AR-ITGHSDIapgRKTDPGP 167
                 88.*****999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1454.79
//
Query:       EHU02349.1  [L=284]
Description: putative inner membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-153  507.9  13.5     8e-153  507.8  13.5    1.0  1  AmpE       Regulatory signalling modulator protein AmpE
  ------ inclusion threshold ------
       0.14   11.4   9.0        2.2    7.4   8.7    2.6  1  CobD_Cbib  CobD/Cbib protein


Domain annotation for each model (and alignments):
>> AmpE  Regulatory signalling modulator protein AmpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.8  13.5  8.9e-157    8e-153       1     284 []       1     284 []       1     284 [] 1.00

  Alignments for each domain:
  == domain 1  score: 507.8 bits;  conditional E-value: 8.9e-157
        AmpE   1 mtlftlllvlaverlfklgehwqldhrlevvfrrvkeaslvktllltivamvvvlailrllqgllfglpllllwillgllcigagkvrkhyraylkaaa 99 
                 mtlftlllvl +erlfklgehwqldhrle vfrr +++s+++tll+ i+am ++++++  l+g+lfg+p ll+wi++gllcigag vr+hy++yl+aa+
  EHU02349.1   1 MTLFTLLLVLGWERLFKLGEHWQLDHRLEPVFRRRQHFSVMRTLLMLIIAMGLTALVVGSLKGILFGIPQLLFWIVVGLLCIGAGVVRQHYHTYLQAAS 99 
                 9************************************************************************************************** PP

        AmpE 100 rgdadaseemaeelalihglpvdasekerlrelqnallwinfryylaplfwfvvagpygpvalvgyavlrayqtwlarrktpleraqsgvdallhvldw 198
                 r+da a ++ma+el+lihg+pv++se+e+lrelqnal+winfr+ylap+fwfvv+g++gpv lvgya+lra+q+wla++ tp+ r+qsgvd++lhv+dw
  EHU02349.1 100 RDDAAAHQAMAAELTLIHGVPVECSEREFLRELQNALIWINFRFYLAPMFWFVVGGAWGPVLLVGYAFLRAWQSWLAKHCTPMARSQSGVDSILHVVDW 198
                 *************************************************************************************************** PP

        AmpE 199 ipvrlagvayallghgekalpawfaslgdlrssqyqvltrlaqfslarephldkvetpkaavslakkvtlvvvvvvalltiygalv 284
                 +pvrlagvayallghgekalpawfasl+d++ sqyqvlt laqfslar+ph+dkv+tp++av+lak+++lv+vvvvalltiyg+lv
  EHU02349.1 199 LPVRLAGVAYALLGHGEKALPAWFASLTDRHHSQYQVLTTLAQFSLARDPHSDKVATPRVAVALAKRISLVLVVVVALLTIYGTLV 284
                 ************************************************************************************98 PP

>> CobD_Cbib  CobD/Cbib protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.7   0.00024       2.2      31     209 ..      28     216 ..      14     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00024
   CobD_Cbib  31 lekrlrk.akkerlaGvllalllvllallvallllllalaall...glvlealllkltlalrsLleevrkvakalk.gdleaaReavs..miVgRdtse 122
                 le ++r+ ++ + ++ +l+++++++l++lv+  l  ++    +   +l++ +++  l++++  ++++ +  ++a + +d +a ++  +   ++   + e
  EHU02349.1  28 LEPVFRRrQHFSVMRTLLMLIIAMGLTALVVGSLKGIL----FgipQLLFWIVVGLLCIGAGVVRQHYHTYLQAASrDDAAAHQAMAAelTLIHGVPVE 122
                 45545421222333444555555555555444444433....122467999*******************99999625544433333333567778899 PP

   CobD_Cbib 123 ldeeeiarAavEsvaENlsDgvvaPlfyflllglpgalaykavnTlDsmvGYkneryedfGwaaArlDD...llnyiPARltalllala....a 209
                 ++e e +r    ++       ++aP+f+f+++g++g ++      l +   +  ++ + + +    +D    ++ ++P Rl+++ +al     +
  EHU02349.1 123 CSEREFLRELQNALIWINFRFYLAPMFWFVVGGAWGPVLLVGYAFLRAWQSWLAKHCTPMARSQSGVDSilhVVDWLPVRLAGVAYALLghgeK 216
                 ***************9999*************88765554444444444444444555555555556641115678888888888888433442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.33
# Mc/sec: 2542.59
//
Query:       EHU02350.1  [L=319]
Description: alpha-L-arabinofuranosidase II precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-65  220.0   0.8    4.3e-65  219.9   0.8    1.0  1  Glyco_hydro_43  Glycosyl hydrolases family 43
     0.0049   16.8   0.8       0.99    9.5   0.1    2.8  3  G-gamma         GGL domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.8   4.9e-69   4.3e-65       3     288 .]       7     306 ..       5     306 .. 0.96

  Alignments for each domain:
  == domain 1  score: 219.9 bits;  conditional E-value: 4.9e-69
                     SESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEE.....EEETTCCC CS
  Glyco_hydro_43   3 nPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyyt.....atkkgeak 92 
                     nP+++ + +Dp+ilr ge yY+++s  +++++l+++++++L+ ++++++v+++r+   ++ ++++WAPe++++ +++ +y++       k+g ++
      EHU02350.1   7 NPFIERR-ADPFILRHGEHYYFIASV-PEYDRLELRRASTLTALRTATPVVVWRKPDIGPFSELIWAPELHRIAEHWVIYFAaapsrDIKDGLFQ 99 
                     8998776.9*************9999.67*****************************************************9998877899999 PP

                     SEEEEEEESSTT...S--EECEESSCS.TSSECEEEEEEETTSEEEEEEEEEHCC.CSEEEEEEEEEETTTTEEEEEEEEEEECGC..CTCTTBB CS
  Glyco_hydro_43  93 qgifvvtadspe...Gpwsdpiklkts.gssgiDpslfedddGkkYlvwgqwdkr.eghseiylaeldddtlklkgektklikagt..elkglkv 180
                     ++++ +++++ +   G w+ p ++    +s+++D+++f+++ Gk +++w+q+d+  +g+s++ylael+++++ + +++ +l+ ++   e+ g+ v
      EHU02350.1 100 HRMYALVCNDDDplsGHWQPPRQVLSHlDSFALDATHFVHQ-GKNWYLWAQKDPAiPGNSNLYLAELRNPWTLKGKPV-MLSRPEYewECAGFSV 192
                     99*********9************777**************.*****************************9998888.9999988899****** PP

                     EEEEEEEEETTEEEEEEEESTSSTTEEEEE...EEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESC...CTTCCG CS
  Glyco_hydro_43 181 tEGPhlykrdgyyYLlaaeggtgseyavvv...arsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrp...egrgly 269
                     +EG + + +++++++++++++t+++y++++    r +++l  + w+k+ ++++ +s e++++gpGH  +++++dg++ +vyha+++   eg++l+
      EHU02350.1 193 NEGAAAIVHGDWLFITYSASATDENYCMGLlsiPRDADPLNAMAWQKSARPVFATSWENRQYGPGHSCFTQDEDGRDLLVYHARNYteiEGDPLW 287
                     ******************************9999************************************************************* PP

                     TTSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 270 tlgRetllqrvewkaDGwp 288
                     + +R+t+l+ + w++DG+p
      EHU02350.1 288 DGNRHTRLKYFHWREDGTP 306
                     *****************98 PP

>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.65   5.9e+03      35      43 ..       9      17 ..       6      20 .. 0.57
   2 !    9.5   0.1   0.00011      0.99      35      61 ..     144     172 ..     142     180 .. 0.86
   3 !    4.5   0.1    0.0038        34      34      62 ..     277     304 ..     275     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.65
     G-gamma 35 YvestkDpl 43
                ++e+  Dp+
  EHU02350.1  9 FIERRADPF 17
                455555665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00011
     G-gamma  35 Yve.stkDpllpevw.gppsageNpwiek 61 
                 ++  ++kDp++p+    ++ +  Npw  k
  EHU02350.1 144 WYLwAQKDPAIPGNSnLYLAELRNPWTLK 172
                 66669*********99**********987 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0038
     G-gamma  34 dYvestkDpllpevwgppsageNpwieks 62 
                 +Y+e + Dpl  +  ++   + ++w+e++
  EHU02350.1 277 NYTEIEGDPLWDGN-RHTRLKYFHWREDG 304
                 7*************.55569*******94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2676.61
//
Query:       EHU02351.1  [L=464]
Description: putative GPH family arabinoside transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.3e-106  354.5  27.0   7.1e-106  354.3  27.0    1.0  1  MFS_2     MFS/sugar transport protein
    1.5e-08   34.0  25.2    1.5e-08   34.0  25.2    2.8  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.02   13.5  14.2      0.039   12.6   0.2    3.6  4  ATG22     Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.3  27.0  1.2e-109  7.1e-106       1     426 [.      13     432 ..      13     433 .. 0.97

  Alignments for each domain:
  == domain 1  score: 354.3 bits;  conditional E-value: 1.2e-109
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 +yg+g++++n+++ ++ ++l++Fytdv+gl +alv ++ll++r++DaitDpi+G+++d+t+ rwGr+rPwll   ++++++ +l+ft+p++s+ +k+iw
  EHU02351.1  13 GYGMGDAGCNMIGGAVMLFLSYFYTDVFGLAPALVDVLLLSVRILDAITDPIMGAIADRTKSRWGRFRPWLLWVSVPYVIFSVLMFTTPDWSYPSKVIW 111
                 6************************************************************************************************** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 ++ ty+ + ++yt+++ipy+sl+ v+t d+ eR s +s+r+++  +++++ ++   +++ ++gg +++++gy +++++ al+ l+++++++++++er +
  EHU02351.1 112 AFTTYFFMSLAYTAINIPYCSLGGVMTNDPGERVSCQSYRFVMVGIATLILSLSLLPMAEWFGG-ENKARGYQMAMAVLALVGLAMFLFCFATVRERIQ 209
                 ***************************************************************9.********************************65 PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllga 296
                       ++ +++  l ++l++v +n++++++lll l+++ +++++ +++lYy+t v+g ++  a++f  + +++++lg+ l+++l+ r++k +++++  
  EHU02351.1 210 ------PAVPTHDDLKNDLRDVWKNDQWVRILLLTLCNVCPGFIRMAATLYYVTRVMGqTAHFATLFISLGVVGMMLGSTLAKVLTDRWCKLKVFFWTN 302
                 ......59999***********************************************5555555555556**************************** PP

       MFS_2 297 lltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqsp 395
                 +++++++ ++++l+p  ++++++++++ ++  ++   l ws++adv Dyge+ktGkr +g+ f+ ++f+ k++ +++++++g+lLsa+gy+a+a +qs+
  EHU02351.1 303 IALALFSCGFYWLDPHATVTVVIAYFLLNVLHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKVGLAVAGAMVGFLLSAYGYDAGAKQQSA 401
                 *************************************************************************************************** PP

       MFS_2 396 qvvlalrllyavlpavlllvallllvrypln 426
                 +++ ++ ll++v+p++ +l+++ ++ + +++
  EHU02351.1 402 HALNGIVLLFTVIPGAGYLITAGVVRLMKVD 432
                 ****************999999888887776 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0  25.2   2.4e-12   1.5e-08      14     320 ..      27     340 ..      19     351 .. 0.76
   2 ?   -1.0   3.1      0.11   6.6e+02     132     166 ..     374     414 ..     352     433 .. 0.57

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.4e-12
       MFS_1  14 ilgpalplalaedlgispseigllltlyalgaavaslplGrlsd....rfGrrr.vlllglllfalglllll....fa..sslwlllvlrvlqGlgaga 101
                 +++++l+ ++++ +g++p+ +  ll  + ++ a++ +++G+++d    r+Gr r +ll+  + ++++++l++    ++  s + + +   ++++l++ a
  EHU02351.1  27 AVMLFLSYFYTDVFGLAPALVDVLLLSVRILDAITDPIMGAIADrtksRWGRFRpWLLWVSVPYVIFSVLMFttpdWSypSKVIWAFTTYFFMSLAYTA 125
                 345555559999********************************8888889988899999999999933333244433544444588999999999999 PP

       MFS_1 102 lfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                 ++    +l   ++++  er +  ++  +++++++++  l    +a+++g       ++ ++ +la+v+l +f++  ++ +++++  + +++ ++     
  EHU02351.1 126 INIPYCSLGGVMTNDpGERVSCQSYRFVMVGIATLILSLSLLPMAEWFGgenkargYQMAMAVLALVGLAMFLF--CFATVRERIQPAVPTHDD----L 218
                 99999999999999988*****************99999989999********999999999999999999997..888888888888888888....5 PP

       MFS_1 193 paplvpawkallkdpvlw.illialllf....ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllll 286
                 +  l++     ++d+  w  +l+  l++    f+ ++++l++++  + ++ ++++ l ++  l++++++   ++ la  l dr+ + +  +++ ++l+l
  EHU02351.1 219 KNDLRD---VWKNDQ--WvRILLLTLCNvcpgFIRMAATLYYVTRVMGQTAHFAT-LFIS--LGVVGMML--GSTLAKVLTDRWCKLKVFFWTNIALAL 307
                 666666...444455..66333333333133366666688888888888888883.3333..34444443..366999999****************** PP

       MFS_1 287 aalglallavtssavllllvlvliGfglgfvfps 320
                 +++g+++l +   +v ++++++l+ + + + +p+
  EHU02351.1 308 FSCGFYWLDPH-ATVTVVIAYFLLNVLHQIPSPL 340
                 *********99.6666666777777766555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.11
       MFS_1 132 lGailgpllggllasslg......Wravfyilaivsllafv 166
                 +G +++ +  g+l+s++g       +++  +++iv+l+ ++
  EHU02351.1 374 VGLAVAGAMVGFLLSAYGydagakQQSAHALNGIVLLFTVI 414
                 34444444444444444433333455555566655555544 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.7   0.00021       1.2      83     150 ..      57     132 ..      49     142 .. 0.77
   2 ?    1.3   0.1     0.017     1e+02     193     258 ..     145     213 ..     138     243 .. 0.59
   3 ?   12.6   0.2   6.6e-06     0.039     413     467 ..     261     315 ..     260     319 .. 0.97
   4 ?   -1.5   0.3      0.13   7.6e+02     327     369 ..     377     420 ..     364     428 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00021
       ATG22  83 lqavvvislsglADyg.....nyrknlLlafaligslstilfllvtpkkY....llgavlyivsntcfgaslvllns 150
                 l a++ ++++++AD++     ++r++lL +++   ++s ++f +    +Y    + + + y  ++++++a+++ + s
  EHU02351.1  57 LDAITDPIMGAIADRTksrwgRFRPWLLWVSVPYVIFSVLMFTT-PDWSYpskvIWAFTTYFFMSLAYTAINIPYCS 132
                 6788899*******998888899****99887666665555554.55555666588888999999999998886655 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.017
       ATG22 193 iSslGlaigylg.ailvqiisilivial..gstatfslrlalllvGlwWliftipaalllkkrpgpplp 258
                 +S  ++ + ++g a+l++ +s+l + +   g+++   +++a+++ +l+ l++ + ++ ++++r +p +p
  EHU02351.1 145 VSCQSYRFVMVGiATLILSLSLLPMAEWfgGENKARGYQMAMAVLALVGLAMFLFCFATVRERIQPAVP 213
                 554444444444234444455555544433334466777777777777777777777777777777777 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 6.6e-06
       ATG22 413 GkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllll 467
                 G+ a+F  L+  ++  + ++g+ +  ++tDr+  +++ f+ +++L ++++++++l
  EHU02351.1 261 GQTAHFATLFISLGVVGMMLGSTLAKVLTDRWCKLKVFFWTNIALALFSCGFYWL 315
                 89999************************************************96 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.13
       ATG22 327 aviaavlGaflwplvsrr.lnlktkktllaiivlfeliplyGll 369
                 av+ a++G +l  + +    + ++ + l  i++lf++ip  G+l
  EHU02351.1 377 AVAGAMVGFLLSAYGYDAgAKQQSAHALNGIVLLFTVIPGAGYL 420
                 34445666444444433313344668999999******999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3746.32
//
Query:       EHU02352.1  [L=451]
Description: aromatic amino acid transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.5e-121  405.1  46.1   3.9e-121  405.0  46.1    1.0  1  AA_permease    Amino acid permease
    2.1e-40  138.8  50.8    2.9e-40  138.4  50.8    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.0  46.1  4.3e-125  3.9e-121       1     474 [.      17     450 ..      17     451 .] 0.98

  Alignments for each domain:
  == domain 1  score: 405.0 bits;  conditional E-value: 4.3e-125
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg++Gtglf+g+++v+ +aGp +++l+y++ag++ fl+m++lge+++  p++g+f+++a +++g  +Gf+ G+ny++++++v+++el a++
   EHU02352.1  17 HIQLIALGGAVGTGLFLGSASVIKSAGP-AVILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGNFAGFASGWNYWVLYVLVAMAELSAVG 113
                  9***************************.999****************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   +iqfw   +d p +w+ +a+f+v++ +inl +vkv+ge+ef++a+ik+ia+ia+i++g +ll+ g + ++a++r+l+++g+    ++p+g       
   EHU02352.1 114 KYIQFW--APDFP-TWASAAIFFVLINAINLTNVKVFGEMEFWFAIIKVIAVIAMILFGGWLLFIGTGGPQATVRNLWEHGG----FMPNG------- 197
                  ******..*****.*********************************************9999999999999**********....99999....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   + + ++v++i++f+f G elv+i+a+E+++Pe +iPka++qv++ri+ifY++sl+++ +l+p++  +  +      spfv +++e+g +++a+ +n+
   EHU02352.1 198 -LGGLVMVMAIIMFSFGGLELVGITAAEADNPETTIPKATNQVLWRILIFYIGSLAVLLSLMPWTRVTEDT------SPFVFIFHELGDAMVANALNV 288
                  .*****************************************************************77666......8******************** PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                  viltaals++ns++y+ sR+l+ la++g aPk l  v++rgvP+++il+s+++ +l++ll+ l ++  ++f  l++++  + +i+w +i+l++l+fRk
   EHU02352.1 289 VILTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLSVDRRGVPVMSILVSAVATALCVLLNFLMPG--EAFGLLMSLVVSALVINWAMISLAHLKFRK 384
                  ******************************************************************..****************************** PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  +++ qg      +fka l+plg +++l++l  il+++a+++ ++             +++ li ++++i+ +g++++ k+ +
   EHU02352.1 385 KKNQQGVT---TRFKAVLYPLGNWVCLIFLAGILVLMAMTPGMA-------------ISVWLIPVWLIILAIGYFIKNKTQK 450
                  *******5...5********************************.............*******************999876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4  50.8   3.2e-44   2.9e-40       8     418 ..      20     431 ..      16     444 .. 0.87

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 3.2e-44
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g ++g+g f  +  ++ s+gpa+il + ia +i +l+++  + E+    p  g  ++++++ +g++++f s+w +w+ yv+v+++ ls++++
     EHU02352.1  20 LIALGGAVGTGLFLGSasVIKSAGPAVILGYAIAGFIAFLIMR-QLGEMVVEEPVAGSFSHFAYKYWGNFAGFASGWNYWVLYVLVAMAELSAVGK 114
                    5789999******999999999*********999999977777.556664449**********************************999999999 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....stetdtffpngwpgvllg 193
                    y+++ ++pd+ ++       a+++++l+ +in+ ++k  + + ++ +i+k++ ++++++  g++++ g+g +++     +e++ f+png  g +++
     EHU02352.1 115 YIQF-WAPDFPTW-----ASAAIFFVLINAINLTNVKVFGEMEFWFAIIKVIAVIAMILFGGWLLFIGTGGPQAtvrnLWEHGGFMPNGLGGLVMV 204
                    9999.78**9655.....5677899**************************888888888888888888998777766455555999999999*** PP

  AA_permease_2 194 llivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllga 287
                    ++i+++sf+G e +   + e+ +  +++pka++ +l  +l++y++   ++l  +p+  +++ ++  s++   f+ +g  +va +++++i  ++l  
     EHU02352.1 205 MAIIMFSFGGLELVGITAAEADNpeTTIPKATNQVLWRILIFYIGSLAVLLSLMPWTRVTE-DT--SPFVFIFHELGDAMVANALNVVILTAALSV 297
                    ********************6555499********************************97.44..3699999999*99***************** PP

  AA_permease_2 288 intavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl...k 380
                     n++v+ +sr+l+ la++g  P+ + +v+++g p+ +i ++a+ + +++ll  l +++a+ +l+s+ + +l+i +++++++ l+ rkk++++    
     EHU02352.1 298 YNSCVYCNSRMLFGLAQQGNAPKALLSVDRRGVPVMSILVSAVATALCVLLNFLMPGEAFGLLMSLVVSALVINWAMISLAHLKFRKKKNQQgvtT 393
                    *********************************************99999988999**********************************997767 PP

  AA_permease_2 381 rpgkilvaiigalfllfllvalffppkgpatqssliyt 418
                    r++++l  +   ++l+fl  +l ++  +p    s+++ 
     EHU02352.1 394 RFKAVLYPLGNWVCLIFLAGILVLMAMTPGMAISVWLI 431
                    78887666666777777765555555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 3454.88
//
Query:       EHU02353.1  [L=254]
Description: DNA-binding transcriptional dual regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-23   80.4   0.4    1.1e-22   79.4   0.4    1.6  1  GntR            Bacterial regulatory proteins, gntR family
    4.5e-19   69.1  12.0    4.5e-19   69.1  12.0    1.7  2  FCD             FCD domain
    0.00016   21.5   0.4    0.00098   19.0   0.1    2.3  2  MarR            MarR family
     0.0005   19.9   0.3      0.002   18.0   0.1    2.1  1  MarR_2          MarR family
    0.00073   19.4   0.1      0.015   15.2   0.0    2.6  3  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0018   18.2   0.0     0.0048   16.8   0.0    1.7  1  HTH_11          HTH domain
     0.0023   18.1   0.1     0.0058   16.8   0.1    1.6  1  PaaX            PaaX-like protein
     0.0024   17.4   0.0     0.0052   16.3   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0034   17.1   0.0      0.008   15.9   0.0    1.6  1  HTH_DeoR        DeoR-like helix-turn-helix domain
     0.0059   16.7   0.1       0.02   15.0   0.1    2.0  1  HTH_28          Helix-turn-helix domain
      0.008   16.5   0.0      0.019   15.3   0.0    1.6  1  Rrf2            Transcriptional regulator
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.032   14.4   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.038   14.0   0.6       0.11   12.5   0.0    2.0  2  HTH_29          Winged helix-turn helix
      0.045   13.8   1.2       0.16   12.0   0.1    2.4  2  HTH_20          Helix-turn-helix domain
      0.084   12.7   0.0       0.22   11.3   0.0    1.7  1  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.4   9.4e-26   1.1e-22       2      64 .]      12      74 ..      11      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 9.4e-26
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++++++L+ +I++g+l+pG+kL +ereLa++f+Vsr+++ReA++rLea+gl+ rrqg+GtfV
  EHU02353.1 12 SDAIEQQLEFLIMEGTLQPGEKLLPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFV 74
                789***********************************************************9 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.5   7.8e+03      70      78 ..      53      61 ..      47      93 .. 0.53
   2 !   69.1  12.0   3.8e-22   4.5e-19       1     124 [.      99     226 ..      99     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.5
         FCD 70 elleelrar 78
                e++++l+a+
  EHU02353.1 53 EAIQRLEAK 61
                333333333 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 3.8e-22
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlals....sperlee 95 
                 dl+e+R++LE+ aa  aa r+t++dl+++++ +  +++a ++gdl++ a+a + +  a+ eaa+n vl +ll+++ + l++  r +++    ++e l++
  EHU02353.1  99 DLLETRHALEGIAAYYAALRGTEEDLQRIRDCHLHIQQAQDSGDLDAEADAVMKYQIAVTEAAHNVVLLHLLRSMGPMLEQNVRQNFEllysRREMLAK 197
                 799*****************************************************************************9555555557856666666 PP

         FCD  96 slaeHraildAirardadaAraamrrHle 124
                 +  +  +i++Ai ar++++Ar+a +rHl+
  EHU02353.1 198 VSGHRARIFEAIVAREPEQAREASHRHLA 226
                 6666669********************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   8.2e-07   0.00098      20      51 ..      37      68 ..      32      69 .. 0.93
   2 ?   -1.0   0.0       1.4   1.7e+03       7      18 ..     165     176 ..     162     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8.2e-07
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 20 vseLakklgvskstvtrvldrLekkGlieRsk 51
                  eLak++ vs++++ +++ rLe kGl+ R++
  EHU02353.1 37 ERELAKQFDVSRPSLREAIQRLEAKGLLLRRQ 68
                579**************************997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                 HHHHHHHHSTTE CS
        MarR   7 viLrilyeqgpl 18 
                 v+L++l+++gp+
  EHU02353.1 165 VLLHLLRSMGPM 176
                 799******997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.6e-06     0.002      25      56 ..      38      69 ..      29      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                +ela+ +++s++++  +++rL+a+GL+ rr g
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
                69*************************99976 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.015      26      58 ..      38      70 ..      33      80 .. 0.90
   2 ?    0.9   0.0      0.36   4.3e+02      11      30 ..     203     222 ..     199     224 .. 0.88
   3 ?   -2.8   0.1         5   5.9e+03      31      48 ..     234     251 ..     228     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgr 58
                +e+a++ +v+r++  e++++Le kGl  r++g 
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAKGLLLRRQGG 70
                89************************9999875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.36
                 CCHCHHHHHHCCCHHCHHCC CS
        TrmB  11 akvYlaLlklgpatadeiae 30 
                 a+++ a+++++p +a+e ++
  EHU02353.1 203 ARIFEAIVAREPEQAREASH 222
                 789************99765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5
                 CTTSSCHCHHHHHHHHHH CS
        TrmB  31 elgvprskvYevLrsLed 48 
                 +  +++s+  ++Lr+L +
  EHU02353.1 234 DRSREQSRRERSLRRLQQ 251
                 556788888899999876 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     4e-06    0.0048      19      44 ..      38      63 ..      22      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4e-06
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgv 44
                 eLA++++vSr   r  I++Le++g+
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAKGL 63
                69**********************95 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   4.9e-06    0.0058      28      59 ..      39      70 ..      37      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.9e-06
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekeg 59
                +l +++++s  ++R a+ Rl+++G+l r + g
  EHU02353.1 39 ELAKQFDVSRPSLREAIQRLEAKGLLLRRQGG 70
                6889**********************999877 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.4e-06    0.0052      21      46 ..      38      63 ..      35      64 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGl 46
                reLA++ ++S++ +++ ++rLe +Gl
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAKGL 63
                8************************8 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.7e-06     0.008      19      55 ..      39      75 ..      35      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.7e-06
    HTH_DeoR 19 elvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                el+ +++vS    R  ++ Le++gll R  GG ++++
  EHU02353.1 39 ELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQ 75
                89**************************999987765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.7e-05      0.02      16      51 ..      38      71 ..      36      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
      HTH_28 16 reaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                re+A+++ +sr +++  i+r+e+ G+  L+ r +++
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAKGL--LLRRQGGG 71
                79***********************9..88888875 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05     0.019       9      61 ..      17      70 ..      10      80 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                HHHHHHHHH.HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2  9 yalhallyL.akeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGk 61
                + l  l++  +++++e+ +  +e+a+++++s++ l+  +++L+ +gl+  ++G 
  EHU02353.1 17 QQLEFLIMEgTLQPGEKLLPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGG 70
                5555555542568888889*****************************999885 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.7e-05     0.032      16      52 ..      28      64 ..      10      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
                    HHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 16 lseekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                    l+ ++k     +la+  +vs +s  e +++Le +G++
      EHU02353.1 28 LQPGEKLLPERELAKQFDVSRPSLREAIQRLEAKGLL 64
                    555666777889***********************97 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.6e-05      0.11      16      49 ..      38      69 ..      35      72 .. 0.86
   2 ?   -2.0   0.1       3.3   3.9e+03      44      55 ..     232     245 ..     227     252 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.6e-05
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldrrr 49
                +++Ak+ ++sr++ + ++ r e++Gl  ll+r +
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAKGL--LLRRQG 69
                689**********************6..776444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.3
      HTH_29  44 lld.rrr.sgrprn 55 
                 lld +r+ s+r r 
  EHU02353.1 232 LLDrSREqSRRERS 245
                 45534443444444 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.16      19      57 ..      19      67 ..      14      71 .. 0.79
   2 ?   -0.6   0.1       1.2   1.4e+03      11      23 ..     201     213 ..     190     226 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                H..........STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 19 L..........araegltaselaerldlskntlsyHLrvLeeagLvevv 57
                L          ++++ l   ela+++d+s+ +l+  ++ Le  gL+ ++
  EHU02353.1 19 LeflimegtlqPGEKLLPERELAKQFDVSRPSLREAIQRLEAKGLLLRR 67
                55555555566777888899**********************9998766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHSTCT CS
      HTH_20  11 vRrrilraLarae 23 
                  R+ri+ a+  +e
  EHU02353.1 201 HRARIFEAIVARE 213
                 5888888883333 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.22      27      50 ..      38      61 ..      36      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
      HTH_10 27 keLAkelGIskstlsehLrkaesk 50
                +eLAk++++s+++l e +++ e k
  EHU02353.1 38 RELAKQFDVSRPSLREAIQRLEAK 61
                69*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1909.29
//
Query:       EHU02354.1  [L=888]
Description: thiamin-binding pyruvate dehydrogenase, decarboxylase component E1 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-104  347.5   0.2   5.2e-104  346.8   0.2    1.4  1  PDH_E1_M         Pyruvate dehydrogenase E1 component middle d
    1.4e-15   57.1   0.0    5.2e-08   32.2   0.0    2.3  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
  ------ inclusion threshold ------
      0.089   12.7   0.0       0.37   10.7   0.0    2.1  2  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> PDH_E1_M  Pyruvate dehydrogenase E1 component middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.8   0.2  8.7e-108  5.2e-104      18     229 .]     489     701 ..     475     701 .. 0.97

  Alignments for each domain:
  == domain 1  score: 346.8 bits;  conditional E-value: 8.7e-108
    PDH_E1_M  18 sktrevattmafvrvlkdlvkdkkigkrvvpiipdeartfgmealfrtlkiytsegqkyesvdknlilsykedkegqileegiteagavaafiaaassy 116
                  + +e++tt+afvr l+ ++k+k i +r+vpi+ deartfgme+lfr+++iy+++gq+y + d++++ +yked++gqil+egi+e ga ++++aaa+sy
  EHU02354.1 489 EQNKEISTTIAFVRALNVMLKNKSIKDRLVPILADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGSSWLAAATSY 587
                 5689*********************************************************************************************** PP

    PDH_E1_M 117 dthdltllpvyvyysmfgfqrvgdliwaaadqlargflvgatagkttlageglqhqdghshllaasipavvsydpayayevavlvaeglkrmyae.ken 214
                 +t +l+++p+y+yysmfgfqr+gdl+w a+dq+argflvg+t+g+ttl+geglqh dghsh+++ +ip++ sydpayayevav++++gl rmy+e +en
  EHU02354.1 588 STNNLPMIPFYIYYSMFGFQRIGDLMWLAGDQQARGFLVGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLVRMYGEaQEN 686
                 ***********************************************************************************************99** PP

    PDH_E1_M 215 viyyltvlnenlvqp 229
                 ++yy+t lnen+  p
  EHU02354.1 687 IYYYITTLNENYHMP 701
                 ************876 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   8.8e-12   5.2e-08      23     214 ..     107     295 ..      80     305 .. 0.70
   2 !   22.4   0.0   8.2e-09   4.9e-05     213     276 ..     362     427 ..     352     459 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 8.8e-12
                      S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTS.TT-S...S-SS--TTTSTT--S--- CS
  Transketolase_N  23 GhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrq.lgsk...tpGhPelghtagvevttG 112
                      Gh  +  + a i ev f+++ +      +  d    v  +Gh s  +Y+  +L    l+ e++++frq ++ k   +  hP l   +  +  t 
       EHU02354.1 107 GHMSSFQSSATIYEVCFNHFFRA----RSEKDGGDLVYFQGHISPGIYARAFLES-RLTEEQMNNFRQeVDGKglsSYPHPKLMP-EFWQFPTV 194
                      44444445555555555555444....4444556678889999999999999986.68889999999533333111344665333.23355555 PP

                      STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGG..GT--S-HHHHHH CS
  Transketolase_N 113 PLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGete..isftedvakrfe 204
                       +G G  na+  a   k l  +     +d + + +y++lgDg + e  s+ a+ +a+  kL++L+ + + n   +dG +     + ++ +  f+
       EHU02354.1 195 SMGLGPLNAIYQAKFLKYLEHRG---LKDTSGQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFIINCNLQRLDGPVTgnGKIINELEGIFA 285
                      55666567776666655555443...3678899********************************************9862256889******* PP

                      HTT-EEEEET CS
  Transketolase_N 205 aygWhvieve 214
                        gW+vi+v 
       EHU02354.1 286 GAGWEVIKVI 295
                      *******984 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 8.2e-09
                      ETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTST.TTTTSGGGTSS.---HHHHHHHHHHTT CS
  Transketolase_N 213 vedgedveaikaaieeakaekdkPsliklrtviGygsp.akagtedvhGa.pLgedevaalkkklG 276
                      +++g+d ++i aa+++a+ +k kP li  +t+ Gyg   +++g++ +h    ++ d v+ ++ ++ 
       EHU02354.1 362 NRGGHDPKKIYAALKKAQDTKGKPVLILAHTIKGYGMGdTAEGKNIAHQVkKMNMDGVRYIRDRFN 427
                      3689*******************************9752667888889752577788888887765 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.3e-05      0.37       8      51 ..     724     768 ..     717     774 .. 0.88
   2 ?   -3.2   0.0       1.2   7.3e+03      97     122 ..     822     848 ..     807     850 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.3e-05
                      TTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHH CS
  Transketolase_C   8 egkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDk 51 
                      ++ +v l++ Gs ++++ eAa+ L+++ gi+ +V+++ ++  l +
       EHU02354.1 724 SKGKVQLLGSGSILRHVREAAQILSADyGIGSDVYSVTSFTELAR 768
                      5679********************************999877655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
                      EEEEE-SS.SSSSGHHHHHHHTT-SHH CS
  Transketolase_C  97 krvggpdv.iepgsaeelekafgldae 122
                       rv g d  +++ s+e+l ++f +da+
       EHU02354.1 822 YRVLGTDGfGRSDSRENLRHHFEVDAA 848
                      6899999999999*****999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 5452.66
//
Query:       EHU02355.1  [L=631]
Description: pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-79  265.2   0.0    6.1e-79  264.7   0.0    1.2  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    1.9e-65  216.7  34.6    1.9e-22   78.9   7.1    3.4  3  Biotin_lipoyl    Biotin-requiring enzyme
    4.9e-16   58.8   0.5    1.7e-15   57.1   0.2    2.2  2  E3_binding       e3 binding domain
    5.7e-15   54.9  14.4       0.03   14.1   0.0    6.5  6  Biotin_lipoyl_2  Biotin-lipoyl like
    4.4e-12   45.8  14.8     0.0013   18.6   1.1    4.1  3  RnfC_N           RnfC Barrel sandwich hybrid domain
    1.7e-08   34.4  16.9      0.006   16.5   1.3    3.7  3  GCV_H            Glycine cleavage H-protein
    2.8e-06   26.7   9.2       0.31   10.2   0.0    4.9  6  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    8.4e-06   25.4  12.7      0.065   12.7   0.4    3.5  3  NQRA             Na(+)-translocating NADH-quinone reductase s
    7.2e-05   22.5  12.2        5.6    6.7   0.2    6.2  6  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
     0.0002   20.9  12.6         13    5.6   0.1    6.3  6  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
  ------ inclusion threshold ------
      0.013   16.2  11.0        5.5    7.7   0.0    5.2  6  HlyD_3           HlyD family secretion protein
      0.013   15.5   0.0      0.035   14.1   0.0    1.7  1  DUF1223          Protein of unknown function (DUF1223)
      0.014   15.2   0.0         36    4.0   0.0    3.3  3  Adeno_knob       Adenoviral fibre protein (knob domain)


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   4.4e-82   6.1e-79       3     232 ..     400     630 ..     398     631 .] 0.98

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 4.4e-82
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-.----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS-- CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeek.akltlldflikavalAlkefPelnasvdeeekeivvkkhvn 98 
                   e e+v+l +i+k+  ++l++ +  iph+t++d+ d+t+l ++rk+ +++++k++  +k t + f++kava+Al+++P +n+s++e+++++++kk++n
    EHU02355.1 400 EVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKRKLdVKYTPVVFIMKAVAAALEQMPRFNSSLSEDAQKLTLKKYIN 496
                   6799********************************************99988889***************************************** PP

                   EEEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT-- CS
  2-oxoacid_dh  99 iGvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvr 195
                   iGvAv+tp+GL+vPv k+++kk++ e+++el ++++kar+gkl++ d++gg+ftis+lG+lG+t+f Pi+n p+vaIlgv++   +pv++ +e+++r
    EHU02355.1 497 IGVAVDTPNGLVVPVFKDVNKKGITELSRELMAVSKKARDGKLTAGDMQGGCFTISSLGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFAPR 593
                   ************************************************************************************************* PP

                   -EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 196 kvmtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                    +m++sls+DHRvidGa++arF++ + ++l+++ +l+
    EHU02355.1 594 LMMPISLSFDHRVIDGADGARFITIIGNMLSDIRRLV 630
                   ********************************99986 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   7.1   1.3e-25   1.9e-22       2      72 ..       4      73 ..       3      74 .. 0.97
   2 !   73.3   5.9   7.6e-24     1e-20       2      72 ..     107     176 ..     106     177 .. 0.96
   3 !   76.8   5.6   6.3e-25   8.7e-22       2      72 ..     208     277 ..     207     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 1.3e-25
                   EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72
                   eik+P+iG++  e v+e+lvkvGdkV+a+q+l++ve +K++me+++p+aGvvkei++  Gd+ve+g+l++ 
     EHU02355.1  4 EIKVPDIGSDEVE-VTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKIATGDKVETGSLIMM 73
                   79********998.*******************************************************96 PP

  == domain 2  score: 73.3 bits;  conditional E-value: 7.6e-24
                    EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    ++++P+iG +  e v+e+lvkvGdkV+a+q+l++ve +K++me++ap aGvvk i++  Gd+v++g+ +++
     EHU02355.1 107 DVNVPDIGGDEVE-VTEILVKVGDKVEAEQSLIVVEGDKASMEVPAPFAGVVKAIKIATGDKVNTGSHIMV 176
                    799******9998.*****************************************************9986 PP

  == domain 3  score: 76.8 bits;  conditional E-value: 6.3e-25
                    EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    ++++P+iG +  e v+evlvkvGdkV+a+q+l++ve +K++me++ap aG+vke++v  Gd+v++g+l+++
     EHU02355.1 208 DVNVPDIGGDEVE-VTEVLVKVGDKVEAEQSLIVVEGDKASMEVPAPFAGTVKELKVATGDKVSTGSLIMV 277
                    799******9998.*******************************************************97 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.2   1.2e-18   1.7e-15       1      36 []     327     362 ..     327     362 .. 0.98
   2 ?   -2.9   0.0       6.7   9.3e+03      26      35 ..     535     544 ..     534     545 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.2e-18
                 SBE-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   1 vlAsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                 v+A+P  R+lA+e G++L++vkGtG++GRI+keDV+
  EHU02355.1 327 VHATPVIRRLAREFGVNLAKVKGTGRKGRILKEDVQ 362
                 79*********************************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.7
                 TTTBE-HHHH CS
  E3_binding  26 pgGRItkeDV 35 
                 ++G +t++D 
  EHU02355.1 535 RDGKLTAGDM 544
                 69******96 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.4    0.0038       5.3      13      33 ..      17      37 ..      16      41 .. 0.89
   2 !   13.7   0.0   2.9e-05     0.041       5      36 ..      46      77 ..      42      90 .. 0.86
   3 !    5.8   0.8    0.0091        12      13      32 ..     120     139 ..     117     144 .. 0.87
   4 !   11.0   0.0   0.00021      0.28       5      36 ..     149     180 ..     145     197 .. 0.81
   5 !    6.1   1.1    0.0072        10      13      32 ..     221     240 ..     218     245 .. 0.87
   6 !   14.1   0.0   2.2e-05      0.03       5      33 ..     250     278 ..     246     288 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0038
  Biotin_lipoyl_2 13 VaqlnVkdGqrVkaGdvLael 33
                     V++++Vk G+ V+a + L++ 
       EHU02355.1 17 VTEILVKVGDKVEAEQSLITV 37
                     9*************9999886 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.9e-05
  Biotin_lipoyl_2  5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsr 36
                     + +p++G+V+++ +  G+ V++G +++  D +
       EHU02355.1 46 VPSPQAGVVKEIKIATGDKVETGSLIMMFDAE 77
                     6799**********************999876 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0091
  Biotin_lipoyl_2  13 VaqlnVkdGqrVkaGdvLae 32 
                      V++++Vk G+ V+a + L++
       EHU02355.1 120 VTEILVKVGDKVEAEQSLIV 139
                      9************9888876 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00021
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsr 36 
                      + ap++G+V+++ +  G+ V++G  +++ +++
       EHU02355.1 149 VPAPFAGVVKAIKIATGDKVNTGSHIMVFETE 180
                      6799*******************888877766 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0072
  Biotin_lipoyl_2  13 VaqlnVkdGqrVkaGdvLae 32 
                      V++++Vk G+ V+a + L++
       EHU02355.1 221 VTEVLVKVGDKVEAEQSLIV 240
                      9************9888876 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 2.2e-05
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      + ap++G+V++l V  G+ V +G ++++ 
       EHU02355.1 250 VPAPFAGTVKELKVATGDKVSTGSLIMVF 278
                      6799*******************999876 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   2.6e-06    0.0037      42      84 ..      18      61 ..      14      77 .. 0.85
   2 !   18.6   1.1   9.7e-07    0.0013      41      90 ..     120     170 ..      86     182 .. 0.74
   3 !   17.4   0.6   2.3e-06    0.0032      41      89 ..     221     270 ..     189     283 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.6e-06
      RnfC_N 42 akplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrl 84
                +++lvkvgdkV+  q + + eg   s++v ++ +G Vk+i+ ++
  EHU02355.1 18 TEILVKVGDKVEAEQSLITVEGdKASMEVPSPQAGVVKEIKIAT 61
                689************9887777688***************8765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 9.7e-07
      RnfC_N  41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsg 90 
                  +++lvkvgdkV+  q +   eg   s++v a+ +G Vkai+ ++  + ++
  EHU02355.1 120 VTEILVKVGDKVEAEQSLIVVEGdKASMEVPAPFAGVVKAIKIATGDKVNT 170
                 5789************9877776677***************9887665444 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 2.3e-06
      RnfC_N  41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgs 89 
                  +++lvkvgdkV+  q +   eg   s++v a+ +GtVk+++ ++  + s
  EHU02355.1 221 VTEVLVKVGDKVEAEQSLIVVEGdKASMEVPAPFAGTVKELKVATGDKVS 270
                 5789************9877776677*************99877666555 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.5     5e-05     0.069      38      75 ..      21      58 ..       9      67 .. 0.87
   2 !   13.5   0.8   3.7e-05      0.05      38      74 ..     124     160 ..     111     169 .. 0.87
   3 !   16.5   1.3   4.4e-06     0.006      38      75 ..     225     262 ..     202     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5e-05
                ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE- CS
       GCV_H 38 lpevgtkvkkgeslaavEsvKaasevyapvsGevvevN 75
                l +vg+kv++++sl +vE  Ka  ev++p  G v e+ 
  EHU02355.1 21 LVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58
                5689******************************9986 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.7e-05
                 ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H  38 lpevgtkvkkgeslaavEsvKaasevyapvsGevvev 74 
                 l +vg+kv++++sl +vE  Ka  ev+ap+ G v  +
  EHU02355.1 124 LVKVGDKVEAEQSLIVVEGDKASMEVPAPFAGVVKAI 160
                 5689****************************99765 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 4.4e-06
                 ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE- CS
       GCV_H  38 lpevgtkvkkgeslaavEsvKaasevyapvsGevvevN 75 
                 l +vg+kv++++sl +vE  Ka  ev+ap+ G+v e  
  EHU02355.1 225 LVKVGDKVEAEQSLIVVEGDKASMEVPAPFAGTVKELK 262
                 5689******************************9975 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       0.3   4.1e+02      30      52 ..      17      38 ..      14      42 .. 0.74
   2 !    9.1   0.1   0.00051      0.71     107     137 ..      42      72 ..      32      76 .. 0.88
   3 ?   -1.5   0.0      0.86   1.2e+03      30      51 ..     120     140 ..     117     144 .. 0.73
   4 !    8.3   0.1    0.0009       1.2     107     137 ..     145     175 ..     140     179 .. 0.89
   5 ?   -1.0   0.0      0.62   8.5e+02      30      51 ..     221     241 ..     218     246 .. 0.77
   6 !   10.2   0.0   0.00023      0.31     107     137 ..     246     276 ..     242     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.3
                XXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 30 veklyvnatgdkVkkGqpLaely 52
                v+++ v+ +gdkV++ q L++++
  EHU02355.1 17 VTEILVK-VGDKVEAEQSLITVE 38
                5666777.888888888888875 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00051
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlf 137
                  +++v +p++GvV e ++++G+ v++g+ ++
  EHU02355.1  42 ASMEVPSPQAGVVKEIKIATGDKVETGSLIM 72 
                 67999********************998766 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.86
                 XXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  30 veklyvnatgdkVkkGqpLael 51 
                 v+++ v+ +gdkV++ q L+ +
  EHU02355.1 120 VTEILVK-VGDKVEAEQSLIVV 140
                 5666777.88888888888766 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0009
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlf 137
                  +++v ap++GvV + ++++G+ v++g+ ++
  EHU02355.1 145 ASMEVPAPFAGVVKAIKIATGDKVNTGSHIM 175
                 578999********************99887 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.62
                 XXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  30 veklyvnatgdkVkkGqpLael 51 
                 v+++ v+ +gdkV++ q L+ +
  EHU02355.1 221 VTEVLVK-VGDKVEAEQSLIVV 241
                 6677777.89999999988876 PP

  == domain 6  score: 10.2 bits;  conditional E-value: 0.00023
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlf 137
                  +++v ap++G+V e++v++G+ v++g+ ++
  EHU02355.1 246 ASMEVPAPFAGTVKELKVATGDKVSTGSLIM 276
                 578999******************9998665 PP

>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.4   4.7e-05     0.065      42     100 ..      19      80 ..      13     102 .. 0.75
   2 !   10.0   0.7    0.0003      0.41      42      81 ..     122     162 ..      98     199 .. 0.83
   3 !    9.1   0.6   0.00058       0.8      42      80 ..     223     262 ..     203     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
        NQRA  42 klkvkegdkVkkGqvlfe.dKknpgvlftspasGevvein..rGekRvlqsvvievdgdeee 100
                 +++vk+gdkV++ q l++ + ++ ++ + sp +G+v+ei+   G+k    s+++  d + + 
  EHU02355.1  19 EILVKVGDKVEAEQSLITvEGDKASMEVPSPQAGVVKEIKiaTGDKVETGSLIMMFDAEGAA 80 
                 589***********99862567788999*********9863368888777777777755444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0003
        NQRA  42 klkvkegdkVkkGqvlf.edKknpgvlftspasGevveinr 81 
                 +++vk+gdkV++ q l+  + ++ ++ + +p +G+v++i+ 
  EHU02355.1 122 EILVKVGDKVEAEQSLIvVEGDKASMEVPAPFAGVVKAIKI 162
                 689*********99886256778889999********9874 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00058
        NQRA  42 klkvkegdkVkkGqvlf.edKknpgvlftspasGevvein 80 
                 +++vk+gdkV++ q l+  + ++ ++ + +p +G+v+e++
  EHU02355.1 223 EVLVKVGDKVEAEQSLIvVEGDKASMEVPAPFAGTVKELK 262
                 689********999876256778889999*******9865 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2    0.0041       5.6      83     111 ..      17      45 ..       9      56 .. 0.78
   2 !    5.5   0.0    0.0095        13      85     112 ..      56      83 ..      49      88 .. 0.85
   3 ?    4.1   0.2     0.027        37      83     107 ..     120     144 ..     112     157 .. 0.82
   4 ?    0.5   0.0      0.35   4.9e+02      86     106 ..     160     180 ..     152     186 .. 0.85
   5 ?    4.3   0.2     0.024        33      83     106 ..     221     244 ..     209     254 .. 0.83
   6 ?    3.7   0.0     0.037        50      81     106 ..     256     281 ..     252     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0041
                 TEEES----SEE-SEEEEEEE-HHHHGGG CS
  PTS_EIIA_1  83 gFellvkegdkVkagdklvevdleaikka 111
                 + e+lvk gdkV+a + l++v+ ++ + +
  EHU02355.1  17 VTEILVKVGDKVEAEQSLITVEGDKASME 45 
                 4579****************998876655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0095
                 EES----SEE-SEEEEEEE-HHHHGGGS CS
  PTS_EIIA_1  85 ellvkegdkVkagdklvevdleaikkag 112
                 e+++++gdkV++g++++ +d e  ++a+
  EHU02355.1  56 EIKIATGDKVETGSLIMMFDAEGAAEAA 83 
                 67899***************99877765 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.027
                 TEEES----SEE-SEEEEEEE-HHH CS
  PTS_EIIA_1  83 gFellvkegdkVkagdklvevdlea 107
                 + e+lvk gdkV+a + l+ v+ ++
  EHU02355.1 120 VTEILVKVGDKVEAEQSLIVVEGDK 144
                 55799*************9887665 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.35
                 ES----SEE-SEEEEEEE-HH CS
  PTS_EIIA_1  86 llvkegdkVkagdklvevdle 106
                 +++++gdkV++g+ ++ ++ e
  EHU02355.1 160 IKIATGDKVNTGSHIMVFETE 180
                 67899**********999876 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.024
                 TEEES----SEE-SEEEEEEE-HH CS
  PTS_EIIA_1  83 gFellvkegdkVkagdklvevdle 106
                 + e+lvk gdkV+a + l+ v+ +
  EHU02355.1 221 VTEVLVKVGDKVEAEQSLIVVEGD 244
                 55799*************988765 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.037
                 TTTEEES----SEE-SEEEEEEE-HH CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdle 106
                 g++ el+v++gdkV++g++++ +++e
  EHU02355.1 256 GTVKELKVATGDKVSTGSLIMVFEVE 281
                 5566899**************99987 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0092        13      36      53 ..      20      37 ..      18      46 .. 0.87
   2 ?    5.0   0.1     0.014        19      30      52 ..      49      73 ..      41      92 .. 0.77
   3 ?    4.6   0.2     0.018        25      36      53 ..     123     140 ..     121     163 .. 0.77
   4 ?    1.9   0.0      0.12   1.7e+02      37      52 ..     161     176 ..     150     198 .. 0.73
   5 ?    4.2   0.1     0.025        34      36      53 ..     224     241 ..     222     250 .. 0.87
   6 ?    3.0   0.0     0.058        80      36      70 ..     261     293 ..     256     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0092
                ES--TT-EEBTTSEEEEE CS
      PYNP_C 36 lhkklGdkVkkGeplati 53
                + +k+GdkV++++ l+t+
  EHU02355.1 20 ILVKVGDKVEAEQSLITV 37
                679************998 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.014
                TT-EEEES--..TT-EEBTTSEEEE CS
      PYNP_C 30 lavGielhkk..lGdkVkkGeplat 52
                +++G++ ++k  +GdkV++G  +++
  EHU02355.1 49 PQAGVVKEIKiaTGDKVETGSLIMM 73
                6788876665226********9997 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
                 ES--TT-EEBTTSEEEEE CS
      PYNP_C  36 lhkklGdkVkkGeplati 53 
                 + +k+GdkV++++ l+++
  EHU02355.1 123 ILVKVGDKVEAEQSLIVV 140
                 679***********9988 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.12
                 S--TT-EEBTTSEEEE CS
      PYNP_C  37 hkklGdkVkkGeplat 52 
                 ++ +GdkV++G  +++
  EHU02355.1 161 KIATGDKVNTGSHIMV 176
                 4457********9996 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.025
                 ES--TT-EEBTTSEEEEE CS
      PYNP_C  36 lhkklGdkVkkGeplati 53 
                 + +k+GdkV++++ l+++
  EHU02355.1 224 VLVKVGDKVEAEQSLIVV 241
                 679**********99887 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.058
                 ES--TT-EEBTTSEEEEEEESSSCHHHHHHHHHHH CS
      PYNP_C  36 lhkklGdkVkkGeplatiYankeekleeavkklkk 70 
                 l++ +GdkV++G  ++ +++ + + +++a+ ++kk
  EHU02355.1 261 LKVATGDKVSTGSLIM-VFEVEGA-APAAAPAAKK 293
                 77899*******9876.5655555.5666665555 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.66     9e+02       9      33 ..      16      40 ..      14      47 .. 0.84
   2 ?    3.9   0.1     0.063        87       3      28 ..      47      72 ..      45      91 .. 0.89
   3 ?   -0.7   0.1       1.7   2.3e+03       9      33 ..     119     143 ..     117     151 .. 0.80
   4 ?    6.6   0.0    0.0091        13       2      29 ..     149     176 ..     148     189 .. 0.87
   5 ?   -1.0   0.1       2.1   2.9e+03       9      33 ..     220     244 ..     218     251 .. 0.81
   6 ?    7.7   0.0     0.004       5.5       2      29 ..     250     277 ..     249     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.66
      HlyD_3  9 vvvelnveegevvqagdelleiipp 33
                +v+e+ v++g+ v+a + l ++  +
  EHU02355.1 16 EVTEILVKVGDKVEAEQSLITVEGD 40
                69999***************99876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.063
      HlyD_3  3 rApvdGvvvelnveegevvqagdell 28
                 +p +Gvv+e+++  g+ v+ g  ++
  EHU02355.1 47 PSPQAGVVKEIKIATGDKVETGSLIM 72
                59******************998876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.7
      HlyD_3   9 vvvelnveegevvqagdelleiipp 33 
                 +v+e+ v++g+ v+a + l  +  +
  EHU02355.1 119 EVTEILVKVGDKVEAEQSLIVVEGD 143
                 6899999********9999998776 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0091
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelle 29 
                 + Ap++Gvv+++++  g+ v+ g  ++ 
  EHU02355.1 149 VPAPFAGVVKAIKIATGDKVNTGSHIMV 176
                 569********************99876 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 2.1
      HlyD_3   9 vvvelnveegevvqagdelleiipp 33 
                 +v+e+ v++g+ v+a + l  +  +
  EHU02355.1 220 EVTEVLVKVGDKVEAEQSLIVVEGD 244
                 6899999999999999999988765 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.004
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelle 29 
                 + Ap++G+v+el+v  g+ v+ g  ++ 
  EHU02355.1 250 VPAPFAGTVKELKVATGDKVSTGSLIMV 277
                 569********************99664 PP

>> DUF1223  Protein of unknown function (DUF1223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.035      32     155 ..     422     545 ..     408     553 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
                 EEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEEEETT-HHHHHHHHHHHHHTT-.S--S-EEEEE-SS.SEEEEE---S.. CS
     DUF1223  32 aLalhVdYwdylGWkDtfassefterQrayaealglrsvYTPqvvvnGreevvgsdeeeleaaisaaaaaaa.aakvkvklsregdetlevsveaaaas 129
                 ++  hV+ +d+   +D    ++f ++Q+a ae+++l+  YTP v++     +  ++  ++++ +s+ a++ + ++ +++ ++ ++ + l v v ++ ++
  EHU02355.1 422 VMIPHVTHFDK---TDITDLEAFRKQQNAEAEKRKLDVKYTPVVFIMKAVAAALEQMPRFNSSLSEDAQKLTlKKYINIGVAVDTPNGLVVPVFKDVNK 517
                 56679999999...7888899**************************9999999999999999998888766577777777766666666666666655 PP

                 ....S-EEEEEEEEEEEEEEE------- CS
     DUF1223 130 ee..keadvllvlvekeeevkvkrGeNa 155
                 ++  + ++ l+++ +k ++ k ++G+ +
  EHU02355.1 518 KGitELSRELMAVSKKARDGKLTAGDMQ 545
                 3331333333444444446666666655 PP

>> Adeno_knob  Adenoviral fibre protein (knob domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.035        48      18      49 ..      14      45 ..       8      66 .. 0.88
   2 ?    3.0   0.0     0.053        73      18      49 ..     117     148 ..     107     163 .. 0.87
   3 ?    4.0   0.0     0.026        36      18      49 ..     218     249 ..     209     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.035
                -EEEEEEEEEETTEEEEEEEEEESSS-GGGGH CS
  Adeno_knob 18 dckftlvltkcgsqvlatvaalavsgdlssmt 49
                ++ +t +l k+g +v a  + ++v gd +sm 
  EHU02355.1 14 EVEVTEILVKVGDKVEAEQSLITVEGDKASME 45
                578899************************95 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.053
                 -EEEEEEEEEETTEEEEEEEEEESSS-GGGGH CS
  Adeno_knob  18 dckftlvltkcgsqvlatvaalavsgdlssmt 49 
                 ++ +t +l k+g +v a  + + v gd +sm 
  EHU02355.1 117 EVEVTEILVKVGDKVEAEQSLIVVEGDKASME 148
                 567899************************95 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.026
                 -EEEEEEEEEETTEEEEEEEEEESSS-GGGGH CS
  Adeno_knob  18 dckftlvltkcgsqvlatvaalavsgdlssmt 49 
                 ++ +t vl k+g +v a  + + v gd +sm 
  EHU02355.1 218 EVEVTEVLVKVGDKVEAEQSLIVVEGDKASME 249
                 577899************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4335.39
//
Query:       EHU02356.1  [L=474]
Description: dihydrolipoamide dehydrogenase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-64  217.4   4.4    3.2e-64  217.0   4.4    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    9.2e-36  122.5   0.1    2.1e-35  121.3   0.1    1.6  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    8.5e-19   67.9   4.1    4.8e-16   59.1   0.8    3.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      1e-09   38.1   0.4    8.8e-06   25.2   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.8e-09   36.1   1.1    2.1e-08   33.6   0.3    2.5  3  GIDA           Glucose inhibited division protein A
    3.2e-08   33.4   1.7    3.9e-08   33.1   0.5    1.7  2  FAD_oxidored   FAD dependent oxidoreductase
    2.9e-06   26.7   1.1      0.049   12.9   0.1    3.2  3  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    1.8e-05   24.9   3.7     0.0012   19.0   0.2    3.2  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    3.5e-05   22.7   3.2     0.0018   17.1   0.1    2.7  3  HI0933_like    HI0933-like protein
    4.4e-05   22.7   4.8    0.00013   21.2   0.3    2.8  3  FAD_binding_2  FAD binding domain
    0.00015   21.1   0.1    0.00036   19.8   0.1    1.7  1  Thi4           Thi4 family
    0.00022   20.6   0.4     0.0007   18.9   0.1    1.9  2  FAD_binding_3  FAD binding domain
     0.0029   17.5   1.2        1.1    9.1   0.1    2.3  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.013   14.9   0.0        2.9    7.2   0.0    2.3  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.03   13.4   0.2       0.58    9.2   0.1    2.2  2  Lycopene_cycl  Lycopene cyclase protein
       0.18   11.3   7.1       0.34   10.4   0.6    3.1  3  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.0   4.4   2.8e-67   3.2e-64       2     294 .]       8     328 ..       7     328 .. 0.92

  Alignments for each domain:
  == domain 1  score: 217.0 bits;  conditional E-value: 2.8e-67
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias........................evvkklnqgielll 71 
                  +vvv+G+GpAG++aa + a  g++++lve    l+g cln+gc++skall+va+  e+a+                        +v+++l+ g+  ++
   EHU02356.1   8 QVVVLGAGPAGYSAAFRCADLGLETVLVErystLGGVCLNVGCIPSKALLHVAKVIEEAKaleehgivfgqpqtdinkirswkeKVINQLTGGLSGMA 105
                  8***************************99999***************************************************************** PP

                  CCTCEEEEESCEEEEETEEEC....TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkke....gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalakl 164
                  +  +vk+ +g +k++  ++      g  ++i +d+ ++A Gs+p  l  ip +        r +ds++al+lk++pkr++v GgG iG+E+A +++ l
   EHU02356.1 106 KGRKVKVVNGLGKFTGANTLVvegeGGATTINFDNAIIAAGSRPIELpFIPHE------DPRVWDSTDALELKEVPKRLLVMGGGIIGLEMATVYNAL 197
                  *99*************9887789998899*****************9788877......3478*********************************** PP

                  T-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE....EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2 165 gkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge....klevvledgeeidadlvvvavGvrpstelle.eklgleldergg 257
                  g+e+ +ve  d++ +a dk++ +  ++++ k+  +++l+t+v++++++++    ++e +   ge   +d v+va+G+ p+ ++l+ +k+g+e+d+rg+
   EHU02356.1 198 GSEIDVVEMFDQVIPAADKDVVKVFTKRISKK-FNLMLETKVTAVEAKDDgiyvSMEGKKAPGEAQRYDAVLVAIGRVPNGKGLDaDKAGVEVDDRGF 294
                  ******************************96.66666677776666666334444455555555********************************* PP

                  EE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 258 ivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  i vd+++rtnvp+iyaiGD++   g+p+la++ v +G
   EHU02356.1 295 IRVDKQMRTNVPHIYAIGDIV---GQPMLAHKGVHEG 328
                  *********************...********99887 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.1   1.9e-38   2.1e-35       1     109 [.     347     455 ..     347     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 1.9e-38
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    ip++++t+peva+vGlte+eAk++gi +++++fp++a+gra+a++ ++g++Kl++d++t++v+G  ivG + gel+ e+ +ai++g+ +ed+a ti
     EHU02356.1 347 IPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGITKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTI 442
                    79********************************************************************************************** PP

                    SSSSSTGGGGHCH CS
  Pyr_redox_dim  97 hihPtlsealkea 109
                    h+hPtl+e++  a
     EHU02356.1 443 HAHPTLHESVGLA 455
                    ********98766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0023       2.6       2      35 ..       9      42 ..       8      45 .. 0.93
   2 !   59.1   0.8   4.3e-19   4.8e-16       1      76 [.     177     250 ..     177     256 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0023
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                vvv+G+G  g  +A   a+lg ++ +ver ++l 
  EHU02356.1  9 VVVLGAGPAGYSAAFRCADLGLETVLVERYSTLG 42
                8****************************88775 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 4.3e-19
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesv 76 
                 +++v+GgG iglE+A+++++lg+++ vve+ d++ ++ D+++ k+++++++k+  +++l+tkv+++e ++dg    v
  EHU02356.1 177 RLLVMGGGIIGLEMATVYNALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKK-FNLMLETKVTAVEAKDDGiY--V 250
                 689*************************************************9.*****************933..3 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00016      0.18       1      29 [.      10      37 ..      10      44 .. 0.87
   2 !   25.2   0.0   7.8e-09   8.8e-06     122     305 .]     135     312 ..     111     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEk 29
                 ++ GaGPaG +aa  + ++gle  + +E+
   EHU02356.1 10 VVLGAGPAGYSAAFRCADLGLE-TVLVER 37
                 689******************6.567777 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 7.8e-09
  Pyr_redox_3 122 tyeAkkviiAtGefdkP.nklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrl 218
                  t++ ++ iiA+G   +P +++ ip e+  v  +    e+++   ++++V Gg+  + ++A+   + g+e+ vv   +++       +  +  +  +r+
   EHU02356.1 135 TINFDNAIIAAGS--RPiELPFIPHEDPRVWDSTDALELKE-VPKRLLVMGGGIIGLEMATVYNALGSEIDVVEMFDQVIPAA---DKDVVKVFTKRI 226
                  6666788899998..56144556666643333333345544.4789***************************9876544332...223333444444 PP

  Pyr_redox_3 219 eelvkeekikvlfnaevkeikekeeeykvktedgk...kvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglflaG 305
                   +     k++++ +++v++++ k+  + v++e +k   + + +d v++a+G  p+ + l++  +++e d+ g++ +++ ++ tnvp ++ +G
   EHU02356.1 227 SK-----KFNLMLETKVTAVEAKDDGIYVSMEGKKapgEAQRYDAVLVAIGRVPNGKGLDAdkAGVEVDDRGFIRVDK-QMRTNVPHIYAIG 312
                  43.....578999999*****999999998665431125667999**************9988999999999999986.699*******999 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.3   1.9e-11   2.1e-08       1      60 [.       8      70 ..       8      86 .. 0.91
   2 ?   -1.2   0.0      0.73   8.2e+02       3      28 ..     179     204 ..     177     228 .. 0.83
   3 ?   -1.2   0.0      0.72     8e+02     347     367 ..     298     317 ..     293     337 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.9e-11
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEidalg 60
                +v+V+G+G AG+ AA+ +a lG++++L+       + +++++C ps   + ++++ +E +al+
  EHU02356.1  8 QVVVLGAGPAGYSAAFRCADLGLETVLVerySTLGGVCLNVGCIPSKALLHVAKVIEEAKALE 70
                69**************************88777788899**********************97 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.73
                 EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                  V GgG  G+e A     lG ++  +
  EHU02356.1 179 LVMGGGIIGLEMATVYNALGSEIDVV 204
                 799**********9999888877655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.72
                 -TTSBBSSSBTEEE-CGGGTB CS
        GIDA 347 lntLetkkvkgLflAGqinGt 367
                  ++++t+ v+++++ G+i G 
  EHU02356.1 298 DKQMRTN-VPHIYAIGDIVGQ 317
                 4588888.9*********996 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.5   3.5e-11   3.9e-08       1      38 [.       8      45 ..       8      63 .. 0.93
   2 ?   -3.1   0.0       3.3   3.7e+03      92     126 ..     221     255 ..     210     268 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3.5e-11
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  +vvV G+gpaG+ AA  +a  G +++Lve++  lGG  
    EHU02356.1  8 QVVVLGAGPAGYSAAFRCADLGLETVLVERYSTLGGVC 45
                  59**********************************86 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
  FAD_oxidored  92 vleemlaeagvtvllntrlvevekegkr.iesvtve 126
                   v+ + +++ + +++l+t++++ve +++    s++ +
    EHU02356.1 221 VFTKRISK-KFNLMLETKVTAVEAKDDGiYVSMEGK 255
                   55555555.889999999999999874434455443 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00042      0.47      29      58 ..       7      36 ..       2      41 .. 0.87
   2 !   12.9   0.1   4.4e-05     0.049      28      69 ..     175     216 ..     170     258 .. 0.79
   3 ?    0.5   0.0      0.28   3.1e+02     126     151 ..     426     450 ..     424     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00042
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlD 58
                  +v+v+G+G aG +A+  ++ lg ++++++
   EHU02356.1  7 TQVVVLGAGPAGYSAAFRCADLGLETVLVE 36
                 68********************99887765 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.4e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                  p + lv+GgG+ Gl+ + + ++lg ++ v+++  +++   ++
   EHU02356.1 175 PKRLLVMGGGIIGLEMATVYNALGSEIDVVEMFDQVIPAADK 216
                  5689**********************9999987777666665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.28
                  ETTGGGT-SBTT--TBBTTSEEEEET CS
  AlaDh_PNT_C 126 DvAidqGGnvetsrltthgepvveek 151
                   +Ai+ G   e+++lt h++p+++ +
   EHU02356.1 426 GLAIEMGCDAEDIALTIHAHPTLH-E 450
                  58*******************998.4 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.1e-06    0.0012       1      36 [.      11      46 ..      11      53 .. 0.95
   2 ?    5.2   0.0     0.023        26       1      29 [.     180     208 ..     180     210 .. 0.90
   3 ?   -1.5   0.0       2.8   3.1e+03      19      35 ..     395     413 ..     383     434 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++GaG +G +aA ++a+ g++ +l+e+ + lGG + 
     EHU02356.1 11 VLGAGPAGYSAAFRCADLGLETVLVERYSTLGGVCL 46
                   89*******************************986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.023
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    + G+G+ Gl +A  +   g +++++e+ d
     EHU02356.1 180 VMGGGIIGLEMATVYNALGSEIDVVEMFD 208
                    56**********************99865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.8
                    TEEEEEE-SSSS..SSGGG CS
  NAD_binding_8  19 gfdvlllekrdr..lGGra 35 
                    g+  l+++k ++  +GG +
     EHU02356.1 395 GITKLIFDKETHrvIGGAI 413
                    6677888886655588765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.6e-06    0.0018       2      36 ..       8      42 ..       7      49 .. 0.93
   2 ?   -0.9   0.1      0.47   5.2e+02       3      32 ..     178     207 ..     176     212 .. 0.87
   3 !    5.7   0.1    0.0046       5.1     100     163 ..     209     272 ..     190     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+v+G+G+AG  aA ++a+ g +++l+e+ ++lg
   EHU02356.1  8 QVVVLGAGPAGYSAAFRCADLGLETVLVERYSTLG 42
                 79***************************988877 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.47
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVllleka 32 
                  ++v+GgG  Gl  A   ++ g+++ ++e  
   EHU02356.1 178 LLVMGGGIIGLEMATVYNALGSEIDVVEMF 207
                  789*******************99999865 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0046
                  EEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.....TTEEEEESEEEE--- CS
  HI0933_like 100 rlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktk....seeeleadklvlAtG 163
                  ++ p++   +d+v++++k++++ + +l+let+v++ve+++dg + v+++     +e+ + d++++A+G
   EHU02356.1 209 QVIPAA--DKDVVKVFTKRISK-KFNLMLETKVTAVEAKDDG-IYVSMEgkkaPGEAQRYDAVLVAIG 272
                  566666..579*********86.689************9999.7777742233455667788888887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   1.1e-07   0.00013       2      35 ..       9      42 ..       8      47 .. 0.91
   2 ?   -3.8   0.3       4.6   5.2e+03       3      28 ..     179     204 ..     178     206 .. 0.78
   3 ?    2.6   0.0     0.052        58     374     403 ..     285     316 ..     282     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   v+V G+G AG++AA ++a+ Gl++++ve  +  g
     EHU02356.1  9 VVVLGAGPAGYSAAFRCADLGLETVLVERYSTLG 42
                   9**************************9877665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.6
                    EEE--SHHHHHHHHHHHHTTT-EEEE CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavv 28 
                    +V G+G+ GL  A+  +  G ++ vv
     EHU02356.1 179 LVMGGGIIGLEMATVYNALGSEIDVV 204
                    89*******99998777777766666 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.052
                    -EEEBETTS..BESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 374 gGvetdeng..rvldadgqpipGLYAaGevaa 403
                    +Gve+d++g  rv+++  +++p  YA+G   +
     EHU02356.1 285 AGVEVDDRGfiRVDKQMRTNVPHIYAIGDIVG 316
                    6888888875577888888*********9875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   3.2e-07   0.00036      16      65 ..       5      53 ..       1      85 [. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.2e-07
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBS CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfs 65
                +++ vv+ GaG++G +aa+  a   +l+++++er  ++GG     G + s
  EHU02356.1  5 IKTQVVVLGAGPAGYSAAFRCADL-GLETVLVERYSTLGGVCLNVGCIPS 53
                5789*******************9.**********999997766665544 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   6.3e-07    0.0007       1      35 [.       6      40 ..       6      42 .. 0.96
   2 ?   -1.3   0.0      0.92     1e+03       5      34 ..     179     208 ..     177     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.3e-07
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   +t+V++ GaGpaG ++a   +  G ++vlve++st
     EHU02356.1  6 KTQVVVLGAGPAGYSAAFRCADLGLETVLVERYST 40
                   69******************************987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.92
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    l+ G+G  Gl  a++    G +  +ve  +
     EHU02356.1 179 LVMGGGIIGLEMATVYNALGSEIDVVEMFD 208
                    788999999999999888888877777554 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0039       4.3       1      30 [.       8      37 ..       8      70 .. 0.94
   2 !    9.1   0.1     0.001       1.1       4      53 ..     180     229 ..     177     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0039
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdi 30
                +v v+GaG  G + a  +a  gle+vlv++
  EHU02356.1  8 QVVVLGAGPAGYSAAFRCADLGLETVLVER 37
                699************************997 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.001
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTT CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekg 53 
                 v+G G++G ++a+v  + g e+ +v++ ++ + +a + + k + k ++k+
  EHU02356.1 180 VMGGGIIGLEMATVYNALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKK 229
                 99*************************99999999888888777666654 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.011        12      37      70 ..       7      40 ..       2      64 .. 0.88
   2 ?    7.2   0.0    0.0026       2.9      36      73 ..     175     212 ..     159     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.011
                  SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgmkviaydrskk 70
                   +v ++G+G  G ++a r++ +g++ + ++r+ +
    EHU02356.1  7 TQVVVLGAGPAGYSAAFRCADLGLETVLVERYST 40
                  5799************************999965 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0026
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                    k++ ++G G IG ++a + +a+g ++ +++ + +   
    EHU02356.1 175 PKRLLVMGGGIIGLEMATVYNALGSEIDVVEMFDQVIP 212
                   48999********************9999888877555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00051      0.58       2      31 ..       9      36 ..       8      42 .. 0.93
   2 ?    2.2   0.0     0.068        76       2      52 ..     178     227 ..     177     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00051
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlie 31
                   vvv GaGpAg s A r   a  gl+ vl+e
     EHU02356.1  9 VVVLGAGPAGYSAAFRC--ADLGLETVLVE 36
                   8****************..99*******98 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.068
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdefedlg 52 
                    ++v+G+G  gl +A     ++ g ++ ++e  ++++ ++++ v   + + ++
     EHU02356.1 178 LLVMGGGIIGLEMATVY--NALGSEIDVVEMFDQVIPAADKdVVKVFTKRIS 227
                    6899**********999..888888888888888877776666666555555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6    0.0003      0.34       2      33 ..       9      42 ..       8      45 .. 0.93
   2 ?    2.4   0.4     0.087        97       2      30 ..     178     208 ..     177     217 .. 0.75
   3 ?   -0.0   0.0      0.46   5.1e+02     162     201 ..     231     272 ..     213     276 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                vv+ G+G +G s+A+  a  g  ++l+e+ + +g
  EHU02356.1  9 VVVLGAGPAGYSAAFRCADLGleTVLVERYSTLG 42
                9****************999*********98887 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.087
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 +++ GGGiiGl  A    + g  + ++e+ d
  EHU02356.1 178 LLVMGGGIIGLEMATVYNALGseIDVVEMFD 208
                 5899******977766654566788888765 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.46
                 EEEESECEEEEEEEETCEEEEE...EECT.EEEEEEEEEEE--G CS
         DAO 162 eilegtevtgleeedgkvwgve...rttp.gendaadavVnaaG 201
                 ++ ++t+vt++e++d++   v    + ++ ge +++dav +a G
  EHU02356.1 231 NLMLETKVTAVEAKDDG-IYVSmegK-KApGEAQRYDAVLVAIG 272
                 567789*****887644.44447854.44477656799999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3601.24
//
Query:       EHU02357.1  [L=306]
Description: LysR family transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-40  138.6   0.9      3e-40  137.8   0.9    1.3  1  LysR_substrate  LysR substrate binding domain
    1.4e-18   66.6   2.8    1.4e-18   66.6   2.8    1.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.024   13.8   0.5      0.033   13.3   0.5    1.1  1  PHTB1_C         PTHB1 C-terminus
      0.042   14.0   0.1      0.097   12.8   0.1    1.6  1  HTH_28          Helix-turn-helix domain
      0.049   13.4   0.7       0.17   11.7   0.7    1.9  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.9   8.5e-44     3e-40       2     205 ..      92     295 ..      91     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 8.5e-44
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLar.ge 94 
                     ++++g+L++ +p ++ + ++  l+  f++ryP+++le+ ++d  +l+d l++g +D++ir+g+   ++++a p++   + ++vasp+  ++r g+
      EHU02357.1  92 ARPHGTLKLNMPRSAEALFFDSLILPFLQRYPDITLEIDSND--ALVDILEAG-FDAGIRYGDVLAQDMIALPFGpAMRTLVVASPAF-IERhGA 182
                     6799**************************************..*********.*********************999*********9.9999** PP

                     SECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                     p +++dL ++p+i ++ +sg  +r+++ +a +++++++ ++l +++ e +l++++aG Gia+l + +v+++l++g lv   l++++     ++l+
      EHU02357.1 183 PQTPDDLLQFPCIERRFPSGqrYRWEFMHAGKKREVAVSGSLVLDNNERILQAALAGAGIAFLQEAVVSASLRSGSLV-ELLSHYTENaDGFWLY 276
                     *************997777777********************************************************.9999998888****** PP

                     EETTCCCHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflr 205
                     y+ +r+ s+ +r+fid+lr
      EHU02357.1 277 YPGRRYVSAPLRHFIDWLR 295
                     *****************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   2.8   3.9e-22   1.4e-18       1      60 []       8      67 ..       8      67 .. 0.98
   2 ?   -3.2   0.0       2.4   8.6e+03      30      39 ..      80      89 ..      79      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.9e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+ l+ f a+a ++sf++AA++ +++++a+s++++  E++lgv+L++Rt+r+++LT+aG+
  EHU02357.1  8 LQELEMFSAIAHHRSFRKAAQARNVTPSALSHAMRHFEQRLGVRLLNRTTRSVSLTQAGQ 67
                6789*******************************************************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
                HHHHHHHHHH CS
       HTH_1 30 vsrqikrLEe 39
                +s+++ +L++
  EHU02357.1 80 LSQAVDELND 89
                7999999997 PP

>> PHTB1_C  PTHB1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   9.2e-06     0.033     200     273 ..      12      88 ..       3      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.2e-06
     PHTB1_C 200 elfelidkhfelrqeaekleeeLeerasqfRaiqrrLLtrfkdktpaalq...nLdtLLegtyrqvialadaleeae 273
                 e+f++i +h + r++a++ +   +  ++ +R +++rL +r+ ++t+++++   + +  L++ + ++++l++a++e++
  EHU02357.1  12 EMFSAIAHHRSFRKAAQARNVTPSALSHAMRHFEQRLGVRLLNRTTRSVSltqAGQHFLQRIQPALLDLSQAVDELN 88 
                 789******************************************9998765677899***********99999876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.7e-05     0.097       7      41 ..      15      50 ..      11      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
      HTH_28  7 kllaaGhsvreaArelgisrrtvyrWikryee.gGi 41
                 ++a+++s r aA++ +++++ ++  ++ +e+  G+
  EHU02357.1 15 SAIAHHRSFRKAAQARNVTPSALSHAMRHFEQrLGV 50
                5667777************************97775 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   4.8e-05      0.17       9      50 ..      17      58 ..      11      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                ++++++ +++A+a +v +  l++ +r+ e+ lg+ l +  +r
  EHU02357.1 17 IAHHRSFRKAAQARNVTPSALSHAMRHFEQRLGVRLLNRTTR 58
                5799*******************************9998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2267.05
//
Query:       EHU02358.1  [L=332]
Description: aldo-keto reductase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-75  254.1   0.0    1.7e-75  253.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.19   12.6   0.0       0.45   11.4   0.0    1.6  1  Histone_HNS   H-NS histone family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.0   1.9e-79   1.7e-75       2     292 ..      16     311 ..      15     313 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.9 bits;  conditional E-value: 1.9e-79
                   EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........--SSSTTSSSS-HHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........dlrdaeiksglskenires 89 
                   lglG + ++   ++ ++++al++l ra+e Ginf+DtAe+Yg+ ++e l+++alk    +r+++ +atK         +++ ++  ++ ++++ir++
    EHU02358.1  16 LGLGCMGMTFAyGNHDEQQALNTLSRAFELGINFLDTAEIYGPFTNEVLIAKALKG---RRDNITVATKFgfaitgegQGWEKMTGVNSQPQHIRRA 109
                   89****9999999*******************************************...****************999999999999999******* PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpl 186
                   +e sl rLgtd++Dll+ Hr dps+p ie+v++++++l+keGk+r+iG+S++s + l++a   ++++++a+q ey+l++++ e+ +l +c++++v++
    EHU02358.1 110 VEGSLTRLGTDHIDLLYQHRFDPSVP-IEDVIGTMADLIKEGKARYIGLSEVSSATLRRA--CAVHPVSALQSEYSLWTRDPEQDILATCRELNVGF 203
                   **************************.**************************9999999..9********************************** PP

                   EEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG--- CS
  Aldo_ket_red 187 iaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelkl 281
                   ++ysplg+G+ltgk +s +  ++ + r++l r+  +  + n++++ +l e+a+++g++ aqlal++++++   +++ipgas++++le+n +a ++ l
    EHU02358.1 204 VPYSPLGRGFLTGKLTSVDALDPHDFRRSLPRFqeQAQEHNQKLVAQLTEMAHSYGITAAQLALAWVMAKGEDIVPIPGASKVHHLEENCAAANVVL 300
                   ********************************99888999********************************************************* PP

                   -HHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldel 292
                   +  + ++ld+l
    EHU02358.1 301 TGADSDTLDRL 311
                   *****999986 PP

>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     5e-05      0.45      15      45 ..     238     268 ..     231     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5e-05
                  XXXXXXXXXXXXXXXXXXXXXX----SSS-- CS
  Histone_HNS  15 aleaeerkealaeirelaaeyGltleelaae 45 
                  ++ +e  ++++a+++e+a +yG+t+++la +
   EHU02358.1 238 EQAQEHNQKLVAQLTEMAHSYGITAAQLALA 268
                  3467778889*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2379.52
//
Query:       EHU02359.1  [L=865]
Description: aconitate hydratase 2/2-methylisocitrate dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-98  326.0   0.0    1.2e-97  325.5   0.0    1.3  1  Aconitase_2_N    Aconitate hydratase 2 N-terminus
    1.3e-67  226.7   0.1    2.2e-67  225.9   0.1    1.4  1  Aconitase_B_N    Aconitate B N-terminal domain
    8.2e-41  140.5   0.0    5.1e-39  134.6   0.0    2.4  1  Aconitase        Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
       0.14   12.2   0.0        0.3   11.1   0.0    1.5  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_2_N  Aconitate hydratase 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.5   0.0  2.7e-101   1.2e-97       1     204 []     168     382 ..     168     382 .. 0.99

  Alignments for each domain:
  == domain 1  score: 325.5 bits;  conditional E-value: 2.7e-101
                    EEEEEEEEEEEHHHHS-GGGGGGTTSHHHHHCCTT-S-BTT..........SHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEEETT CS
  Aconitase_2_N   1 vtvfkveGetntDdlsPasdAwsRsDiplHakamlkkkaee..........elkaieelkkkgvplayvgdvvGtGssRksavnsvlWtigedipy 86 
                    vtvfkv+GetntDdlsPa+dAwsR+DiplHa amlk+ +e+          ++k+ie+l++kg+playvgdvvGtGssRksa+nsvlW++g+dip+
     EHU02359.1 168 VTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGiepdepgnigPIKQIEALQAKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPN 263
                    79********************************************************************************************** PP

                    EEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE---TT--TT-EEEEETTTTEEEE.TT--EEEE---S-TCHHHHHHHTSHHHHHHHHHHHHHHHH CS
  Aconitase_2_N  87 vPnkraggvvlGgkiaPiFfntvedsGalpieadvskletGdvieikpkegkikk.eegevvsefklkpetlldevraggripliigrgltekare 181
                    vPnk+ ggvvlGgkiaPiFfnt+ed+Galpie+dv++l++Gdvi+i+p++g++++ e+g+++++f+lk+++l+devraggripliigrglt+kare
     EHU02359.1 264 VPNKKGGGVVLGGKIAPIFFNTMEDAGALPIEVDVNNLNMGDVIDIYPFKGEVRNhETGDLLASFELKTDVLIDEVRAGGRIPLIIGRGLTTKARE 359
                    ******************************************************98999************************************* PP

                    HTT-----SS----------S-- CS
  Aconitase_2_N 182 algleasdvFakpkepaeegkgy 204
                    +lgl+as+vF+ +k++ae+++gy
     EHU02359.1 360 SLGLPASTVFRIAKDVAESTRGY 382
                    *********************98 PP

>> Aconitase_B_N  Aconitate B N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.9   0.1     5e-71   2.2e-67       1     154 []       4     156 ..       4     156 .. 0.99

  Alignments for each domain:
  == domain 1  score: 225.9 bits;  conditional E-value: 5e-71
  Aconitase_B_N   1 eyrkhveeraalgipplPLdaeqtaelvellknpkageeellleLltnrvppGvdeaayvKAefLaaiakgeaesplispeeAvelLgtMlGGynv 96 
                    eyrkhv+eraa+gi p+PLda+q+a+lvellknp+ageee+l +Ll nrvppGvdeaayvKA+fLaa+akge++spl+spe+AvelLgtM+GGyn+
     EHU02359.1   4 EYRKHVAERAAQGIVPKPLDASQMAALVELLKNPPAGEEEFLTDLLVNRVPPGVDEAAYVKAGFLAAVAKGETTSPLVSPEKAVELLGTMQGGYNI 99 
                    6*********************************************************************************************** PP

  Aconitase_B_N  97 ksLidllkekdeelaeeaaeaLkktllvydafedveelake.naaakevleswaeaewF 154
                    ++Li++l+  d++la  aa+aL++tll++d+f+dvee+ak+ na+ak+v++swa+aew+
     EHU02359.1 100 HPLIEALD--DAKLAPIAAKALSHTLLMFDSFYDVEEKAKAgNAHAKQVMQSWADAEWY 156
                    ********..************************************************8 PP

>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   1.1e-42   5.1e-39     102     461 .]     472     818 ..     408     818 .. 0.84

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 1.1e-42
   Aconitase 102 vppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigklrkkgvv.. 198
                   pg G++H   l+  ++lp+++  g+DSHT+   g   + ++ G+  ++ + ++  + l +p++v v+++Gk+++g+t +Dlv+a+     k+g    
  EHU02359.1 472 LRPGDGVIHSW-LNR-MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLtv 565
                 6799******9.666.7***************9999...89*******************************************998544333333233 PP

   Aconitase 199 ...gkvvEffG.....egvesLsledraTiaNMaaEvGAttglfpvde.ktleYLkatgr...............eeaav.lveaydkaqalfelaade 272
                    gk   f G     eg+ +L++e+ + +++ +aE  A  ++++ d+  + eYL+ +                  e ++  +e++ +  +   l+ad+
  EHU02359.1 566 ekkGKKNIFSGrileiEGLPDLKVEQAFELTDASAERSAAGCTIKLDQaPIKEYLTSNIVllkwmisegygdrrtLERRIeGMEKWLADPQ--LLEADA 662
                 33355555555555558899****************************55778*9944437778877776543321111212233443333..2789** PP

   Aconitase 273 daeydkvleldlstl.epsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekgl 370
                 daey+ v+++dl+++ ep +  p+ P+da  l ++v                           +  k+d ++igSC+ +++ ++raa +ll+  ++kg+
  EHU02359.1 663 DAEYAAVIDIDLAEIkEPILCAPNDPDDARLL-SDV---------------------------QGEKIDEVFIGSCM-TNIGHFRAAGKLLD--SHKGQ 730
                 ***************66999*********999.333...........................234699*******8.678***********..56663 PP

   Aconitase 371 kvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                       +++vaP ++   a+l++eG+ +++ k G+ +  +gCs C+gn+ r+++g ++vs+s+RNF +R g++++ yLaS el+++++l G
  EHU02359.1 731 -LP--TRLWVAPPTKMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVSSLLG 818
                 .33..47*******************************************************************************99987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.6e-05       0.3      57      94 ..     686     721 ..     683     741 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.6e-05
                      HHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C  57 gDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +Dp  +++l++v gek   +++++gS+ +niGH  aA 
       EHU02359.1 686 NDPDDARLLSDVQGEKI--DEVFIGSCMTNIGHFRAAG 721
                      899999*********99..56************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5807.56
//
Query:       EHU02360.1  [L=120]
Description: uncharacterized UPF0231 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-41  140.8   2.4    2.6e-41  140.7   2.4    1.0  1  UPF0231   Uncharacterised protein family (UPF0231)


Domain annotation for each model (and alignments):
>> UPF0231  Uncharacterised protein family (UPF0231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   2.4   1.5e-45   2.6e-41       1     121 []       1     117 [.       1     117 [. 0.98

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 1.5e-45
     UPF0231   1 MdYeftrdlegevvakfsmeheaigrWlneevgkdlekiqevlaaieelkasqeeelqlkgkeysllldedevevkanalaleedeeeeleedlslyde 99 
                 M+Yef rd++g+v++++sm+hea+g+W+neevg+d++ ++ev a+ ++l  s e+++q  g+ey+l++d++ev v+an+l++e de   +ee++++yde
  EHU02360.1   1 MEYEFLRDITGKVKVRMSMGHEALGHWFNEEVGHDASVLDEVEAEAQKLTGS-ERQWQRIGREYTLWMDDEEVIVRANTLNFEGDE---MEEGMNYYDE 95 
                 ***************************************************9.***************************888777...9********* PP

     UPF0231 100 esiafCGleDfeelleswqefi 121
                 es++fCG eDf +++ +w++f+
  EHU02360.1  96 ESLCFCGKEDFLAVIAAWRRFM 117
                 ********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 897.67
//
Query:       EHU02361.1  [L=173]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-45  152.6   0.0    7.2e-45  151.9   0.0    1.3  1  DDE_Tnp_1_5     Transposase DDE domain
    2.4e-07   30.6   0.0    3.2e-07   30.2   0.0    1.2  1  DDE_Tnp_1       Transposase DDE domain
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.18   11.6   0.0    1.3  1  Cyclophil_like  Cyclophilin-like


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.0   1.2e-48   7.2e-45       1     112 []      19     130 ..      19     130 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 1.2e-48
  DDE_Tnp_1_5   1 kkRGsltiwldeeaiaawkekkkngkrgrpqvysdaaiqtcltvkvlfklplRqlqGfvqsllklaglellvpdystlsrraktlevkipvkrkskgl 98 
                  ++RGs+t+wld eai+aw e++++ +rgrpq+ysd+ai+t+l++k++f+l+lR++qGf++s+++l+g++l++pdys +s+r+k+++v++++ ++ + +
   EHU02361.1  19 INRGSITFWLDGEAIQAWYESATPASRGRPQRYSDLAITTVLMIKRVFRLTLRAAQGFIDSIFSLMGVPLRCPDYSSVSKRTKSVNVSFKTPTRGEIA 116
                  59***************************************************************************************77777777* PP

  DDE_Tnp_1_5  99 hlvvdstGlkvlge 112
                  hlv+dstGlkv+ge
   EHU02361.1 117 HLVIDSTGLKVFGE 130
                  ************97 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   5.4e-11   3.2e-07       5      55 ..     116     166 ..     112     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 5.4e-11
   DDE_Tnp_1   5 evlivDattvrvpgtkedarwgykggkykygyklhiavdtrsglilsvvit 55 
                  +l++D+t ++v g++e++ +++++ +++ ++klh+avd++++ i+ ++++
  EHU02361.1 116 AHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHVAVDGKTHEIICADLS 166
                 689*******************************************99986 PP

>> Cyclophil_like  Cyclophilin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.1e-05      0.18      57      94 ..      16      54 ..       7      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
                    ESSB-TTEEEEECCCTEEEEESS.--TT-TTSB--SSSE CS
  Cyclophil_like 57 kevveagdiaywppGkalclffG.ktPisddeirpaspv 94
                    k+ ++ g i++w  G+a+   +   tP+s + ++ +s  
      EHU02361.1 16 KALINRGSITFWLDGEAIQAWYEsATPASRGRPQRYSDL 54
                    567999************99885269***9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1310.36
//
Query:       EHU02362.1  [L=46]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.13   12.1   0.0    1.0  1  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.2e-06      0.13      35      63 ..      14      42 ..       5      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.2e-06
       RVT_3 35 qgkasveeAElqALlrGLqlalklgirrl 63
                 + ++v++AE++A++r+L+   k g+ + 
  EHU02362.1 14 LRDYDVQVAEALAMVRALNRMTKAGMPES 42
                56689******************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 402.69
//
Query:       EHU02363.1  [L=515]
Description: methyl-accepting chemotaxis sensory transducer [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-41  139.7  35.9    2.5e-40  138.1  20.9    2.7  2  MCPsignal     Methyl-accepting chemotaxis protein (MCP) signa
    5.2e-34  117.1   4.4    5.2e-34  117.1   4.4    3.4  3  CHASE3        CHASE3 domain
    2.9e-10   40.4   0.5    2.9e-10   40.4   0.5    4.8  5  HAMP          HAMP domain
  ------ inclusion threshold ------
       0.39   11.3   4.8        1.7    9.2   4.8    2.1  1  MEA1          Male enhanced antigen 1 (MEA1)
        1.5    9.0   8.0       0.37   11.0   2.0    2.8  2  RasGAP_C      RasGAP C-terminus


Domain annotation for each model (and alignments):
>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   8.7    0.0027       9.5      90     150 ..     260     320 ..     221     334 .. 0.48
   2 !  138.1  20.9   6.8e-44   2.5e-40       3     172 .]     327     482 ..     321     482 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0027
                 HHHHHH..............HHHHHHHHHHHHHH....HHHCCHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  90 eiealiieiqkeindsvesleetrqrveegselv....eetgealkeiveavaevadlvqeiaaa 150
                  ++    +++ +i+ds++s+e + +++++g ++     ee + al++ ++++++++++v++ ++ 
  EHU02363.1 260 HLR----NLVTQIKDSAASVELAASEIAQGNTELssrtEEQAAALQQTAASMEQITATVRNNTSV 320
                 222....2234445555555555555555543320000222233444444444444444433333 PP

  == domain 2  score: 138.1 bits;  conditional E-value: 6.8e-44
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
   MCPsignal   3 laeeaseeAeeggkevanvvkqmeeieksskeisdiieVideiadQTNlLALNAaiEAARAGeqGrGFaVVAdEVrkLAersaqaakeiealiieiqke 101
                 +a+e+++  + ++k v+++ ++m++i+ s++++++i++Vi++ia+QTN+LALNAa+EAARAGe+GrGFaVVA EVr+LA+rsa +++ei +li      
  EHU02363.1 327 SARETESLTRASEKAVNEMSHTMHSISVSAAKVKEITAVIQSIAFQTNILALNAAVEAARAGEHGRGFAVVATEVRTLAQRSASSSREIGNLI------ 419
                 577788888899*********************************************************************************...... PP

                 ........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 102 indsvesleetrqrveegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveevakvt 172
                         ee+++ v++g++ +++t++++ + +++va++a+ ++ +a as eq +++++v+ av+++++vt
  EHU02363.1 420 --------EEAVTGVAKGVQAADHTAQSILKAASEVASLAQYMDGLALASVEQMQGVSQVSIAVTQMDSVT 482
                 ........99**********************************************************996 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   4.4   1.5e-37   5.2e-34       2     137 ..      40     181 ..      39     182 .. 0.95
   2 !    4.8   6.9    0.0066        24      14     125 ..     246     360 ..     239     368 .. 0.73
   3 ?    0.3   1.0      0.17   6.1e+02      75     135 ..     433     492 ..     399     495 .. 0.71

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 1.5e-37
      CHASE3   2 aewvehtqevlanlerllsalvdaEtgqRGYlltgdeefLepyeqaraeiqealeelreltadnpeqqerldrlealieqkl.aeleetialrre...g 96 
                 +++  ht++v++ l+++ ++l+++Etg+RGY l+g+ ++L+p++q++++++++ ++  +lt+dnp+qq+rl +le++ +++l +++++++a+r++   g
  EHU02363.1  40 SKLNVHTYQVVEGLNKVTESLLNMETGLRGYALSGQTQMLAPFNQGKQAFSDYTASTHQLTQDNPVQQQRLVDLESRQKNWLeSYARNVMAARERlnqG 138
                 67889*****************************************************************************99********9999975 PP

      CHASE3  97 gle..aalalvrsdegkelmdeiraliaemrdeerrllaqrea 137
                 +l+    l+++++degk +md++r+ i+ m+ +e+ ll+ re 
  EHU02363.1 139 NLDqqHFLDIFATDEGKVQMDAMRNVIESMIVTEKSLLKSRED 181
                 555569**********************************986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0066
      CHASE3  14 nlerllsalvdaEtgqRGYlltgdeefLepyeqaraeiqealeelreltadnpeqqer....ldrlealieqklaeleetialrreggleaalalvrsd 108
                 ++ +ll+al ++++ +R  l t+  +  +  e a +ei +  +el++ t+++ + +++    ++++ a++++  +++e t  ++re    + +   + +
  EHU02363.1 246 ETGKLLTALANMQNHLRN-LVTQIKDSAASVELAASEIAQGNTELSSRTEEQAAALQQtaasMEQITATVRNNTSVAESTASSARETESLTRASEKAVN 343
                 566778888888888887.88888888888888888888888888888888886666666778888888888888888888888884333444455555 PP

      CHASE3 109 egkelmdeiraliaemr 125
                 e  ++m+ i   +a+++
  EHU02363.1 344 EMSHTMHSISVSAAKVK 360
                 66667777777777665 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.17
      CHASE3  75 lealieqklaeleetialrreggleaalalvrsdegkelmdeiraliaemrdeerrllaqr 135
                 +  ++++ l+ + e+  l++   +  ala v + +g  ++    ++++ + + + +l++q 
  EHU02363.1 433 ADHTAQSILKAASEVASLAQY-MDGLALASVEQMQGVSQVSIAVTQMDSVTQSNAALVEQS 492
                 444455555666666666666.555788888888888888888888888888888888776 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.82   2.9e+03      18      36 ..     133     153 ..     126     153 .. 0.70
   2 !   40.4   0.5     8e-14   2.9e-10       1      52 [.     211     262 ..     211     263 .. 0.97
   3 ?    0.9   0.1      0.17   6.1e+02      14      28 ..     276     292 ..     272     316 .. 0.81
   4 ?   -2.6   0.0       2.1   7.4e+03      32      41 ..     410     419 ..     395     420 .. 0.58
   5 ?   -3.1   0.0         3   1.1e+04      34      44 ..     444     454 ..     431     458 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.82
                 HHHTTTBTSST..CCTTSSSH CS
        HAMP  18 rriaaGdldtr..lpvsgrDE 36 
                 +r+ +G+ld++  l++   DE
  EHU02363.1 133 ERLNQGNLDQQhfLDIFATDE 153
                 677789***997777766666 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 8e-14
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 l++r+i+rPL   + +a+ ia+Gdl++ ++v+++DE G L  a+ +M+++Lr
  EHU02363.1 211 LISRSISRPLAVAVHTADTIARGDLTSVITVNRQDETGKLLTALANMQNHLR 262
                 689***********************************************98 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.17
                 HHHHHHHTTT..BTSST CS
        HAMP  14 araarriaaG..dldtr 28 
                 + aa +ia+G  +l++r
  EHU02363.1 276 ELAASEIAQGntELSSR 292
                 67999999995544444 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.1
                 TSSSHHHHHH CS
        HAMP  32 sgrDEiGeLa 41 
                 s+  EiG L+
  EHU02363.1 410 SSSREIGNLI 419
                 3567777775 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 3
                 SSHHHHHHHHH CS
        HAMP  34 rDEiGeLaraf 44 
                   E++ La+ +
  EHU02363.1 444 ASEVASLAQYM 454
                 46777777765 PP

>> MEA1  Male enhanced antigen 1 (MEA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.8   0.00049       1.7       8      96 ..     289     370 ..     269     373 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00049
        MEA1   8 LnqdpeeeealeeedeeeeeesevdeseeesvmglhlpeapaadseeedeeeeesevrevwsaprssessIpldaekveevkstMakvk 96 
                 L+  +ee++a  ++++++ e+++++  +++s     ++e+ a +s+ e+e+ +++++++v+++ ++  +sI   a+kv+e+ +++++++
  EHU02363.1 289 LSSRTEEQAAALQQTAASMEQITATVRNNTS-----VAESTA-SSARETESLTRASEKAVNEM-SHTMHSISVSAAKVKEITAVIQSIA 370
                 4444444444455555555555555444444.....333333.34455555555556666666.99999****************9996 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.4      0.24   8.7e+02      29      47 ..     160     178 ..     106     191 .. 0.52
   2 ?   11.0   2.0    0.0001      0.37      16     104 ..     236     329 ..     233     369 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.24
    RasGAP_C  29 ellneIakdirnkgrlrek 47 
                  + n I+  i + ++l ++
  EHU02363.1 160 AMRNVIESMIVTEKSLLKS 178
                 3344444444444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0001
    RasGAP_C  16 eelgvisrennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk........lpfskqyfkkr 104
                 ++   ++r+++  +ll+++a+   ++++l  ++k    s+e + +++ + n  l+s+ e+  a ++++ + +++   +            + +++ r
  EHU02363.1 236 TSVITVNRQDETGKLLTALANMQNHLRNLVTQIKDSAASVELAASEIAQGNTELSSRTEEQAAALQQTAASMEQITATvrnntsvaE---STASSAR 329
                 5566789************************************************************99999555422333443321...2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2531  (0.141168); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.40
# Mc/sec: 3826.81
//
Query:       EHU02364.1  [L=390]
Description: rhamnosyltransferase I, subunit B [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-06   27.0   0.0    6.7e-06   26.2   0.0    1.4  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.021   14.8   0.0    1.4  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   7.4e-10   6.7e-06       2     120 ..       4     119 ..       3     130 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 7.4e-10
                      EEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---G.HCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC CS
  Glyco_transf_28   2 vllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiage.klrrklspknlkeilkvlkavvkakkilkeakpdavvg 94 
                      ++ + G++G+vfP + +   Lk+++h+V yl + + ++++   ++gl f+ ++ + ++ +  +++ l++ +     ++++  ++ e++ ++  +
       EHU02364.1   4 IIGALGSAGDVFPCIEIGSLLKEKNHDV-YLLANDYFRSEA-VDRGLSFVAVGDKeTYVKAVQDRALWDKKHA---LKRISHYMAEQQEAMFDA 92 
                      66789***********************.5**********8.99*******9999444444478888887777...555555555555554444 PP

                      CCCCC.CHCCCCCHCCCTTHCCCCCHC CS
  Glyco_transf_28  95 tggyv.slpaviaaplaripviihEqn 120
                      +   v + +++i + ++ +   + E++
       EHU02364.1  93 MSALVeDDAIIIHSLWCFAAKAVSEKY 119
                      444440555567788888887777776 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.4e-06     0.021      57     122 ..     286     345 ..     246     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-06
                      EEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHH CS
  Glyco_tran_28_C  57 vevfefidkmaeaikaadLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaal 122
                      v+++++ +   ++ +     I ++G gt a+ll++g+p ++ p       +q +Na++le+  ++l
       EHU02364.1 286 VMTLPYLN--IALTETCLFAIHHGGIGTTAQLLKNGVPQLIYPCAF----DQFENARALERLACGL 345
                      55555555..344455557899************************....*********9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2891.10
//
Query:       EHU02365.1  [L=239]
Description: putative alpha/beta superfamily hydrolase/acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-07   29.6   0.0    6.5e-07   29.2   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0077   16.9   0.0     0.0085   16.7   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
        0.2   10.9   0.0       0.25   10.6   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.1e-10   6.5e-07       4      91 ..      31     113 ..      29     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.1e-10
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHHHHHHHH CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGmialaya 91 
                    +++ G +++s ++++  + + La+ + dvi++Dl+ +g+S+p  +   +  +++++ d +  i++   + k++ +v  S+GG+  l ++
     EHU02365.1  31 ILINGALATSSSFRN--WKRFLAD-KSDVITFDLPFSGKSKPFNE---QGCHIVTLDDEVTIIRELISIYKPNiIVSASWGGASTLKLL 113
                    567777777888***..******9.***************99999...799*******************************9776665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0085       2      87 ..      31     119 ..      30     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-06
                    EEE--GC.....GCHHHHHHHHCCT..CEEEEE--TTSTS-GGCS--HHH.......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaag..vhvlapDlpGhGrsdpppldled.......ladlaalldelaagggpvvlvGHSlGGalalaaapla.. 86 
                    +l++Ga +++ss++  ++ ++la+   v  +++Dlp  G s      +++       l+d + +++el++ ++p ++v  S+GGa  l ++ +   
     EHU02365.1  31 ILINGALATSSSFR--NWKRFLADKsdV--ITFDLPFSGKS----KPFNEqgchivtLDDEVTIIRELISIYKPNIIVSASWGGASTLKLLNHGee 118
                    6999*99999***7..555555666446..9*****99955....333332244332244488999998889999**********99986666544 PP

                    . CS
  Abhydrolase_6  87 l 87 
                     
     EHU02365.1 119 G 119
                    2 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.1e-05      0.25      32     123 ..      54     143 ..      25     181 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.1e-05
  Hydrolase_4  32 favyalDhrGhGrse..gkrg.hvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.appll 123
                   +v+++D    G+s+  +++g h+  +dd      ++++++   +  +p +++  S+GG+ +l++l + ++ ++ +i+++  ++ + +++ + + +
   EHU02365.1  54 SDVITFDLPFSGKSKpfNEQGcHIVTLDDE----VTIIRELI--SIYKPNIIVSASWGGASTLKLLNHGEEGLEHAIIASYSFEFNDRMRtYVKQA 143
                  567777777777776553333244444444....44444444..334599******************************9999999864333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1727.28
//
Query:       EHU02366.1  [L=101]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   37.0   0.0    4.4e-09   36.5   0.0    1.3  1  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.072   12.9   0.0    1.3  1  HTH_23     Homeodomain-like domain
      0.073   13.2   0.0        0.1   12.7   0.0    1.2  1  HTH_28     Helix-turn-helix domain
       0.12   12.4   0.0       0.16   12.1   0.0    1.3  1  HTH_29     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.8e-13   4.4e-09      21      57 ..       2      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 9.8e-13
   HTH_Tnp_1 21 epgksvsevArrhgvspnqLykWrrqyregeeaspae 57
                +pg+sv+++Ar+ ++++n L++Wrr+y++g++a+   
  EHU02366.1  2 QPGVSVAQLARENNINDNLLFNWRRLYQQGLLAARTD 38
                89**************************998876554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.072      17      46 ..       4      32 ..       1      36 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                G sv++ Are +++ + + +w++ y + Gl
  EHU02366.1  4 GVSVAQLARENNINDNLLFNWRRLY-QQGL 32
                89***********************.6774 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05       0.1      12      40 ..       4      31 ..       1      38 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryeegG 40
                G+sv+++Are +i+   +  W++ y++ G
  EHU02366.1  4 GVSVAQLARENNINDNLLFNWRRLYQQ-G 31
                89************************9.5 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.5e-05      0.16      11      43 ..       4      35 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                Gvs v+q+A+  ++     ++w++++++g laa
  EHU02366.1  4 GVS-VAQLARENNINDNLLFNWRRLYQQGLLAA 35
                897.************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 775.63
//
Query:       EHU02367.1  [L=115]
Description: IS66 ORF2 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-39  134.1   0.0    1.6e-39  133.9   0.0    1.0  1  TnpB_IS66  IS66 Orf2 like protein


Domain annotation for each model (and alignments):
>> TnpB_IS66  IS66 Orf2 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   8.8e-44   1.6e-39       2     100 ..       9     106 ..       8     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 8.8e-44
   TnpB_IS66   2 riylatgpvDmRkgidgLaalVqeelkldpfsgalFvFrnrrrdrlKiLlwdgnGfvllykrLekgrFkwpkeeeeeaveltaeqlelLleGldlervk 100
                 ri+l++g +DmR+g++gLa  Vq++l+ dpfsg+lF+Fr+rr+d +K+L+ d++G+++++krLe+grF wp  +++++++lt++ql++LleG+++++++
  EHU02367.1   9 RIWLVAGITDMRNGFNGLASRVQNTLRDDPFSGHLFIFRGRRGDMIKVLWADRDGLCMFTKRLERGRFVWPV-TRDGKIHLTPAQLSMLLEGINWKHPQ 106
                 8**********************************************************************7.999********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1026.19
//
Query:       EHU02368.1  [L=523]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-97  326.9   4.5    3.8e-97  325.1   0.0    2.1  2  DDE_Tnp_IS66     Transposase IS66 family
    3.2e-16   59.3   0.1    1.3e-15   57.3   0.1    2.2  1  DDE_Tnp_IS66_C   IS66 C-terminal element
    1.5e-14   54.1   1.5    3.4e-14   52.9   1.5    1.7  1  zf-IS66          zinc-finger binding domain of transposase IS
    8.7e-11   42.4   9.0    1.9e-10   41.4   9.0    1.6  1  LZ_Tnp_IS66      Transposase C of IS166 homeodomain
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.021   14.0   0.8    1.4  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.02   15.2   4.2      0.084   13.2   0.4    2.5  2  Csm1_N           Csm1 N-terminal domain
      0.033   14.1   0.3         20    5.1   0.0    3.1  3  UME              UME (NUC010) domain
      0.039   13.5   2.7       0.04   13.5   1.0    1.7  2  Exonuc_VII_L     Exonuclease VII, large subunit
      0.044   14.1   2.8      0.078   13.3   2.8    1.3  1  Troponin         Troponin
      0.048   12.2   7.4      0.077   11.5   7.4    1.3  1  FUSC             Fusaric acid resistance protein family
      0.049   12.8   0.6      0.081   12.1   0.6    1.2  1  Tho2             Transcription factor/nuclear export subunit 
      0.052   13.3   8.0      0.082   12.7   8.0    1.2  1  FAM184           Family with sequence similarity 184, A and B
       0.13   12.6   2.4       0.34   11.3   2.4    1.7  1  HalX             HalX domain
       0.14   11.8   2.8       0.35   10.5   0.4    2.1  2  LXG              LXG domain of WXG superfamily
       0.19   11.5  11.1       0.31   10.8  11.1    1.2  1  ERM              Ezrin/radixin/moesin family
       0.38   10.8  10.9       0.66   10.0  10.9    1.3  1  DHR10            Designed helical repeat protein 10 domain
       0.45   10.7   2.0          1    9.6   0.1    2.3  2  Zn-ribbon_8      Zinc ribbon domain
       0.54   10.4   5.3        3.4    7.8   0.2    2.7  2  DUF1192          Protein of unknown function (DUF1192)
       0.82    8.9   3.0        1.2    8.3   3.0    1.2  1  TMPIT            TMPIT-like protein
          2    8.0   8.1        4.3    6.8   8.1    1.5  1  HAUS-augmin3     HAUS augmin-like complex subunit 3
        4.2    7.7   8.6        8.7    6.7   8.6    1.4  1  OmpH             Outer membrane protein (OmpH-like)
        5.9    7.1   8.7        2.7    8.1   5.6    1.9  2  CREPT            Cell-cycle alteration and expression-elevate
        9.3    7.0   9.0         18    6.1   2.3    3.0  2  SlyX             SlyX


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.0      0.12        94     167     221 ..      34      91 ..      21     121 .. 0.48
   2 !  325.1   0.0  4.9e-100   3.8e-97       2     281 ..     187     472 ..     186     473 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
  DDE_Tnp_IS66 167 sqaaaealarigklyaierearea....eaeerlalrqeesrpllaeleawleeqlkkv 221
                   sq++a   ++i++l+a+ ++++++    ++e+ ++  +++ r+ ++++ a l+e+ ++v
    EHU02368.1  34 SQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISA-LQEEMAEV 91 
                   57777777778888888888863344442233333333333333333333.22222222 PP

  == domain 2  score: 325.1 bits;  conditional E-value: 4.9e-100
  DDE_Tnp_IS66   2 slagpsllAeilvlkyadhlPlyRqeeilarlGvelsrgtlanwvkraaelleplvealkaallasevihaDETtlrvlkpgrgkgkksylWvyvtd 98 
                   s+agp+llA+i+++k+a+h+P yRq+ei++r+Gvelsr+tl +w ++++ellepl+  l++++l  + +h+D+ +++v +pg+gk+++++lWvyv+d
    EHU02368.1 187 SYAGPGLLARIVTAKFAEHTPHYRQSEIYHRQGVELSRATLGRWSGAVSELLEPLYGLLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRD 283
                   789********************************************************************************************** PP

  DDE_Tnp_IS66  99 kr......kpavlfeyspsRggevaealLagfkGvlvsDgyagYnklae.eqvthalCwaHlrRkfvdaeeakkksqaaaealarigklyaierear 188
                   +r      +pav+f ysp+R+g +++++Lag++G+l++D+y+gYn+l+e +++t+a+C+aH+rRk++d++ +++ +++++eal+rigklyaie+e+r
    EHU02368.1 284 DRnagsqlRPAVWFAYSPDRKGVHPQRHLAGYSGILQADAYGGYNALYEdGRITEAACMAHARRKIHDVHARTP-TDITTEALKRIGKLYAIEAEIR 379
                   ***********************************************999**********************98.*********************9 PP

  DDE_Tnp_IS66 189 eaeaeerlalrqeesrpllaeleawleeqlkkvlpksklgkairyllkrweallrfledgrvpidNNaaERaiRpvvlgRKnslfagseeGae 281
                     +a+erla+r+e++ pl+++l++w++ q k ++++s ++ka +yllk+w+al  ++ +g  +idNN+aE+a+R v+lgRKn+lfags++G+e
    EHU02368.1 380 GSPADERLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDTGGE 472
                   4479***************************************************************************************98 PP

>> DDE_Tnp_IS66_C  IS66 C-terminal element
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   1.7e-18   1.3e-15       1      39 []     479     516 ..     479     516 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 1.7e-18
  DDE_Tnp_IS66_C   1 SLieTAKlNgvdPyaYLkdvLerlpdahpaedleeLLPW 39 
                     SLi T++lNgvdP+++L++v+ +++d +p++++++LLPW
      EHU02368.1 479 SLIVTCRLNGVDPETWLRYVIGHIQD-WPVNRVRDLLPW 516
                     9************************9.************ PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.5   4.4e-17   3.4e-14       1      46 []     128     172 ..     128     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.4e-17
     zf-IS66   1 prtCpcCGgllkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                 ++tCp CGg+l  +g d v+e+l+++   f+Vie++rpk+aC +C+
  EHU02368.1 128 ETTCPACGGELNALGCD-VSEQLELISSAFKVIETQRPKLACCSCD 172
                 799******99******.***************************6 PP

>> LZ_Tnp_IS66  Transposase C of IS166 homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   9.0   2.4e-13   1.9e-10       1      68 [.      46     121 ..      46     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.4e-13
  LZ_Tnp_IS66   1 rLeeqlallkrklFGrsSE....ltardpeQleLaleeleaeeaeveak....apkskkrkkrgRkpLpahLPRee 68 
                  rL++ +a+l+r++FG+sSE    +tar+  + e  + +l++e aev  +    a ++  r++  RkpLpa+LPRe+
   EHU02368.1  46 RLKALVAKLQRMQFGKSSEklreKTARQVREAEERISALQEEMAEVLGEqhdpALPQLLRQSSARKPLPASLPRET 121
                  79*****************96666566666666677788888888888899999999*****************97 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.8   2.7e-05     0.021      47     106 ..      34      90 ..      25     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
  Phage_HK97_TLTM  47 resAreyAkeieevkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldk 106
                      ++   +yA ei+ +k+ + kl+  +    ++kl+e+ +    +v eae+ +  l++e+++
       EHU02368.1  34 SQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTAR---QVREAEERISALQEEMAE 90 
                      567789*****************************9888...899************985 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   0.00011     0.084      22      56 ..      23      57 ..      12      71 .. 0.81
   2 ?    2.9   0.4      0.18   1.4e+02      33      53 ..      71      91 ..      68      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      Csm1_N 22 vsklvhENsvLsqkletkdqeiesLkeqlaeleek 56
                + k+ + N++Lsq++  +  ei++Lk+ +a+l+  
  EHU02368.1 23 IRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRM 57
                7888899************************9864 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
      Csm1_N 33 sqkletkdqeiesLkeqlael 53
                +++++  +++i++L+e++ae+
  EHU02368.1 71 ARQVREAEERISALQEEMAEV 91
                578999999*******99986 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.9   1.4e+03      26      54 ..      16      44 ..       9      72 .. 0.74
   2 ?    5.1   0.0     0.026        20      15      54 ..      64     103 ..      57     123 .. 0.82
   3 ?    5.1   0.0     0.027        21       9      40 ..     341     372 ..     339     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
         UME 26 laekkraikaleeliklagssissalpqi 54
                l+e++ +i+ + e  +l++++++ ++  i
  EHU02368.1 16 LQEQQTTIRKMAEYNRLLSQRVAAYASEI 44
                68999999999999999999988887766 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.026
         UME  15 eklndshgkkslaekkraikal.eeliklagssissalpqi 54 
                 ekl ++  + ++ e ++ i al ee+ +++g++ ++alpq+
  EHU02368.1  64 EKLREKTAR-QVREAEERISALqEEMAEVLGEQHDPALPQL 103
                 556555544.888888889999458***************8 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.027
         UME   9 iltrlseklndshgkkslaekkraikaleeli 40 
                  +++  +k++d+h +++++   +a+k +++l 
  EHU02368.1 341 CMAHARRKIHDVHARTPTDITTEALKRIGKLY 372
                 689999**********************9985 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.1e-05      0.04     144     232 ..      10     100 ..       3     189 .. 0.67
   2 ?   -1.3   0.0       1.6   1.3e+03     125     146 ..     351     384 ..     342     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
  Exonuc_VII_L 144 eleeqleelerrlekaikrlleekkqrleklasrlkspeellerk.rqrldeleerleralkkqlkkkrerleelkerl.k...ekleekkerl 232
                     ++ l + ++ + ++++++ +  +qr+ ++as++++ ++l+++  r ++ + +e+l++++++q+++++er++ l+e++ +   e   +++  l
    EHU02368.1  10 ARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLqRMQFGKSSEKLREKTARQVREAEERISALQEEMaEvlgE---QHDPAL 100
                   334445555555556666666777899999999999888866554399999*************************999553331...222222 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
  Exonuc_VII_L 125 dlrapTPtaaAelvvpdkael............e 146
                   d+ a TPt +   +++++ +l             
    EHU02368.1 351 DVHARTPTDITTEALKRIGKLyaieaeirgspaD 384
                   6788888888888887666664444444444332 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.8   9.9e-05     0.078      46     120 ..       9      97 ..       3     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.......XX---THH......HHHHH------ CS
    Troponin  46 eeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalK.......kvrktade......klkkllgekkk 120
                 ++ l++l ++ +  i+k++e    + + va    ei+ lk  v +l+ + f+k + K       +vr  +++      ++  +lge+++
  EHU02368.1   9 NARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqFGKSSEKlrektarQVREAEERisalqeEMAEVLGEQHD 97 
                 579*******************************************9999*******55555553333333344444555566666665 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.4   9.8e-05     0.077     213     295 ..       4      92 ..       1     123 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.8e-05
        FUSC 213 rirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaal....eaaaaaealeaalaalrarlralrrale..a 295
                 + ++++++lr+ll+++++ ++ + ++ rll +  a+ a +   l+al+a+l+++    +++++ e+++ ++++ ++r+ al+++ +  +
  EHU02368.1   4 SYPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMqfgkSSEKLREKTARQVREAEERISALQEEMAevL 92 
                 448899**********************************999**********999996777888888888888888888887766441 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6    0.0001     0.081      24      77 ..      37      92 ..      33     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
        Tho2 24 keqYekeieklkseieelakdr.sde.raaakkkkkekkrlkeliekLeeEkkeqi 77
                +++Y +ei++lk+ +++l++ +  ++ ++  +k  ++ ++ +e+i++L+eE++e  
  EHU02368.1 37 VAAYASEINRLKALVAKLQRMQfGKSsEKLREKTARQVREAEERISALQEEMAEVL 92
                578***************55553233356667777888889999*******99865 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   8.0   0.00011     0.082     114     196 ..      10      96 ..       7     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      FAM184 114 eklrqfaqlqeqle...qekekaLeelrkkhreeveeLlke.qeaqsekllkeqekleekhkaeveklkeeveelekekkklveeyE 196
                 ++lr++ q q++     +e ++ L++  ++++ e+++L+    + q+ ++ k+ ekl+ek + +v++++e++ +l++e++++ +e+ 
  EHU02368.1  10 ARLRALLQEQQTTIrkmAEYNRLLSQRVAAYASEINRLKALvAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 578888777777765557777889**************9862678999**********************************99986 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   0.00044      0.34       2      60 ..      37      97 ..      36     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
        HalX  2 rseYdeelqelfaLasKravLeaekseaeLadsee..YqeLearleelraqldetldeldd 60
                +++Y +e+ +l aL++K + ++  ks++ L++ ++   +e e+r+ +l+++  e+l e+ d
  EHU02368.1 37 VAAYASEINRLKALVAKLQRMQFGKSSEKLREKTArqVREAEERISALQEEMAEVLGEQHD 97
                789*****************************8752277888**************99544 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00045      0.35     152     193 ..      17      58 ..       7      65 .. 0.87
   2 ?    1.3   0.2       0.3   2.3e+02      98     130 ..      64      96 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
         LXG 152 kkvqetiekledfdqeqksalanlesdlkalktyvseLeemt 193
                 ++ q+ti+k+ ++++ +++ +a+  s+++ lk++v++L+ m 
  EHU02368.1  17 QEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQ 58 
                 6679**********************************9884 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.3
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvs 130
                 ++L++  ++++ +a+e +++l++e+ ++l +  
  EHU02368.1  64 EKLREKTARQVREAEERISALQEEMAEVLGEQH 96 
                 678888889999999999999999999887655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  11.1   0.00039      0.31      17     100 ..       5      90 ..       3      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
         ERM  17 lqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesa..ekeeeekeklerklreaeleaarleeeser 100
                 + +e ++ ++ L+e++ t++++ae +r + +     + + +++++  ++l++ +  + +e+ +ek +r++reae++++ l+ee+ +
  EHU02368.1   5 YPDENARLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAE 90 
                 66888999999**********************************999999887335577789*******************9865 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  10.9   0.00085      0.66      37     115 ..      11      91 ..       5      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00085
       DHR10  37 sciklleeieaelakleeakkklkelrdaleekeielrelerkeerlq..rqlenaeeklerlreqaeekreaakarleel 115
                 ++ +ll+e ++ ++k+ e ++ l++  +a+++  ++l+ l +k +r+q  +  e+ +ek++r+ ++aee+  a +++++e+
  EHU02368.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEV 91 
                 56789******************************************988999*************************985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0013         1      24      36 ..     126     138 ..     119     141 .. 0.80
   2 ?   -0.5   0.2       1.9   1.4e+03       7      14 ..     167     174 ..     154     183 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  24 apltaCPeCgsev 36 
                  +++t+CP+Cg+e+
   EHU02368.1 126 PAETTCPACGGEL 138
                  67899*****976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8   7 rCeeCghe 14 
                   C +C+h 
   EHU02368.1 167 ACCSCDHI 174
                  35555554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0044       3.4      25      45 ..      33      53 ..      32      58 .. 0.90
   2 ?    3.4   1.2       0.1        80      22      37 ..      74      89 ..      73      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
     DUF1192 25 LeerIalLeaEIaRleaaiak 45
                L +r+a+  +EI Rl+a +ak
  EHU02368.1 33 LSQRVAAYASEINRLKALVAK 53
                789**************9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
     DUF1192 22 veELeerIalLeaEIa 37
                v E eerI++L++E a
  EHU02368.1 74 VREAEERISALQEEMA 89
                67889*********87 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0    0.0016       1.2      12      92 ..      13      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT 12 keleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk..eeeeeeveelkeelkerkkvlkevesllpkk 92
                ++l +++++ ++k++e+++l s+ + + +++ +rlk+l ++l++++  ++  + +e+++++++e  +++++  +e++++l ++
  EHU02368.1 13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSseKLREKTARQVREAEERISALQEEMAEVLGEQ 95
                55666677888999999999999999999999999999999999997744224445566666666666666666787777766 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1    0.0055       4.3      70     153 ..      13      98 ..       2     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0055
  HAUS-augmin3  70 evileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqel..rkleeeekeakkklkeaqeelraenaetnavLqqltee 153
                   ++ l+e+++++++ ++  + L +  a   ++ n+L++++a+lq+ +  ++ e+  ++++++++ea+e ++a   e+ +vL ++ + 
    EHU02368.1  13 RALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQfgKSSEKLREKTARQVREAEERISALQEEMAEVLGEQHDP 98 
                   55666777777777777777777788899999999999999998874477888899************************998774 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.6     0.011       8.7      10      86 ..      15      95 ..      11     108 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqelqkkeqelqqkqqqkaqelqkk 86
                +l+e + + + ++++++  +++ a+++++ + l++l+++lq+ +   +     +e+ ++++++ e+++ ++q++ a+ l ++
  EHU02368.1 15 LLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFG-KsseklREKTARQVREAEERISALQEEMAEVLGEQ 95
                6777777888899999999*********************966655.23466666666667777777777444444545444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0035       2.7      45     141 ..      11     115 ..       6     117 .. 0.65
   2 ?   -1.5   0.0       3.2   2.5e+03      66     106 ..     386     426 ..     384     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0035
       CREPT  45 eaekllkqveealellaeYnkrLeaeleeRkklakmledfle.aqkellakaeekl.....eelkeklekvksvrkelkshi..qsLPdLtelpdvtgg 135
                   ++ll++ ++ ++ +aeYn  L++ +    +  + l+++++ +q+++  k+ ekl     ++++e  e++++ ++e+ + +  q  P L +l   +++
  EHU02368.1  11 RLRALLQEQQTTIRKMAEYNRLLSQRVAAYASEINRLKALVAkLQRMQFGKSSEKLrektaRQVREAEERISALQEEMAEVLgeQHDPALPQLLRQSSA 109
                 567788888899999999999999888877776666666654145556655555541100145667777777777777766633344666666678889 PP

       CREPT 136 lapLPs 141
                  +pLP 
  EHU02368.1 110 RKPLPA 115
                 999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
       CREPT  66 rLeaeleeRkklakmledfleaqkellakaeekleelkekl 106
                 rL+   e+   l++ l d++++q + l+++  +++ +   l
  EHU02368.1 386 RLAVRKEQTIPLMQSLYDWIQVQMKVLSRHSDTAKAFAYLL 426
                 66666667777999999999999999999988887766555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.022        18      22      53 ..      12      43 ..       8      68 .. 0.88
   2 ?    2.4   1.8      0.32   2.5e+02      34      57 ..      68      91 ..      44      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 22 Lndvvaeqqqqidrlqrqlrllaerlkelees 53
                L + + eqq +i ++ +  rll +r+++ +++
  EHU02368.1 12 LRALLQEQQTTIRKMAEYNRLLSQRVAAYASE 43
                6778899******************9887665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 34 drlqrqlrllaerlkeleessgas 57
                ++  rq+r+ +er+++l+e++++ 
  EHU02368.1 68 EKTARQVREAEERISALQEEMAEV 91
                677888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 3773.34
//
Query:       EHU02369.1  [L=269]
Description: S-adenosylmethionine decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-30  104.2   0.0    8.3e-30  103.2   0.0    1.5  1  AdoMet_dc  S-adenosylmethionine decarboxylase


Domain annotation for each model (and alignments):
>> AdoMet_dc  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   4.6e-34   8.3e-30       5     106 .]      33     169 ..      32     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 4.6e-34
                 EEES--HHHCTSHHHHHHHHHHHHHHCT-EEEEEEEEE-SSS-EEEEEEETT...........................EEEEEEEEGGGTE....... CS
   AdoMet_dc   5 dlygcdpelledaelleqilteaaeaigatvlsvafhkfepeGvsvvvliae...........................ShlsiHtwpetgy....... 69 
                 d y ++ ++ ++a++l +ilte +++iga+vl++a +++ep+G+sv++l++e                           Sh+++Ht+pe ++       
  EHU02369.1  33 DGYIAYIDEQYNANRLTEILTETCSIIGANVLNIARQDYEPQGASVTILVSEepvvpkdidtsehpgplpnsvvahldkSHICVHTYPESHPegglctf 131
                 667889999****************************************************************************************** PP

                 .EEEEEEEESTHHHHHHHHHHHHHHT-SEEEEEEEEEE CS
   AdoMet_dc  70 .aaiDvftcgeispekaleylieafkadrvtvdelkRG 106
                  a+i+v tcg isp+kal+yli+++++d+vtvd+++RG
  EHU02369.1 132 rADIEVSTCGVISPLKALNYLIHQLESDIVTVDYRVRG 169
                 *************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1999.48
//
Query:       EHU02370.1  [L=287]
Description: spermidine synthase (putrescine aminopropyltransferase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-65  220.6   0.0    1.5e-65  220.1   0.0    1.1  1  Spermine_synth   Spermine/spermidine synthase domain
      7e-19   67.5   0.1    1.1e-18   66.8   0.1    1.4  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
     0.0001   22.9   0.0     0.0002   22.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0081   15.7   0.0      0.011   15.2   0.0    1.3  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.023   15.4   0.0      0.047   14.4   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      0.075   12.8   0.0       0.14   12.0   0.0    1.5  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.1   0.0   5.1e-69   1.5e-65       1     182 [.      60     240 ..      60     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: 220.1 bits;  conditional E-value: 5.1e-69
                     THHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EEE CS
  Spermine_synth   1 efaykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayekkfdv 95 
                     ef+y+em++hvpl++h   k vLiiGGgDG +lrev +h  +ekit+v+iD  v+ f++++lp+++++a++d+r++lv++dg++f++++ +kfdv
      EHU02370.1  60 EFIYHEMMTHVPLLAHGAAKSVLIIGGGDGAMLREVSRHTGIEKITMVEIDAGVVTFCRQYLPNHSAGAYDDPRFNLVIDDGVNFVNRTTEKFDV 154
                     79********************************************************************************************* PP

                     EEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEEEETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESST CS
  Spermine_synth  96 vivdsldpvgpaenlFskeffdllkkvlkedGviilqaekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskkn 182
                     +i d++dp+gp e+lF+++f+ ++k++l+e+G++++q+  ++l+++   n +++++++fa +v+++ + +Pty++g+++f+++s+++
      EHU02370.1 155 IISDCTDPIGPGESLFTSDFYAGCKNALNENGIFVAQNGVCFLQQDEAVNSHRKLSHYFA-DVSFYQAAIPTYYGGIMTFAWASDNP 240
                     ************************************************************.***********************995 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1   3.8e-22   1.1e-18       1      53 []       6      57 ..       6      57 .. 0.99

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3.8e-22
                     EEEEEEEETTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N  1 gWfteisdpglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53
                     +W+++ ++ g++++++V+k Ly+ k+ +Qd+ ife++++G+v++LDgvvq+tE
       EHU02370.1  6 MWYETLHT-GFGQYFTVDKELYRDKTAHQDLIIFENAAMGRVMALDGVVQTTE 57
                     8*******.*******************************************9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.8e-08    0.0002       1      72 [.      81     158 ..      81     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.8e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT......TEEEEESBCCG.BSSSTTTEEEEEEES CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl......nvefvqgdaed.lpfedgsfDlvvssg 72 
                      vL +G G G ++++++++ g +k+t+v+i+++ +  +r+ + ++++      ++++v  d  + ++   ++fD+++s  
       EHU02370.1  81 VLIIGGGDGAMLREVSRHTGIEKITMVEIDAGVVTFCRQYLPNHSAgayddpRFNLVIDDGVNfVNRTTEKFDVIIS-D 158
                      789***************99******************99887433446666********9773578999******9.3 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.8e-06     0.011      30     135 ..      76     188 ..      46     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.8e-06
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC......EEEEE-STTTTST..TS-EEEEEE--..-STTTCHCHHHHH CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle......vevvasdvleeve..ekkfdlivsNP..Pfhagkatelava 118
                  ++++vl +G G G++  ++ +++   ++t+v++da  ++++++ l ++ +        ++v  d+++ v+   +kfd+i+s    P+  g+      +
  EHU02370.1  76 GAAKSVLIIGGGDGAMLREVSRHTGIEKITMVEIDAGVVTFCRQYLPNHSAGayddprFNLVIDDGVNFVNrtTEKFDVIISDCtdPIGPGES---LFT 171
                 36788999************************************9988877666788999999999876654479******864338888887...788 PP

                 HHHHHHHHHHEEEEEEE CS
         MTS 119 eeliaeAkeaLkegGeL 135
                  ++ a  k+aL+e+G +
  EHU02370.1 172 SDFYAGCKNALNENGIF 188
                 89999999999999954 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.047       1      72 [.      82     157 ..      82     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.......ssfDlvva 72 
                      L iG+G+G++lr++ +++   ++t v+i++ +++  ++ l  +++   +  +++   ++   g        ++fD++++
       EHU02370.1  82 LIIGGGDGAMLREVSRHTGIEKITMVEIDAGVVTFCRQYLPNHSAGAYDDPRFNLVIDD---GVnfvnrttEKFDVIIS 157
                      569**************99999*****************99999888777777644432...22346899999999985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05      0.14       5     127 ..      79     208 ..      75     237 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre...naqklgld..nveFeqgdieeleklledekfDlilsnevl....nalad 89 
                      ++vl +G G G+ + e  +      +++ ++i++ +++++r+   n +   +d  ++++ + d  ++ +  + ekfD+i+s+++         +
       EHU02370.1  79 KSVLIIGGGDGAMLREVSRHT-GIEKITMVEIDAGVVTFCRQylpNHSAGAYDdpRFNLVIDDGVNFVNR-TTEKFDVIISDCTDpigpGESLF 170
                      566667778888888888532.234588888888888888886666666667766666666777774433.3489*******998889988888 PP

  Methyltransf_31  90 pdkileeiervlkpggilliedprllaelpakveeesk 127
                        +++ + +++l+++gi+++++     ++++ v +++k
       EHU02370.1 171 TSDFYAGCKNALNENGIFVAQNGVCFLQQDEAVNSHRK 208
                      999999***************99966666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2185.92
//
Query:       EHU02371.1  [L=115]
Description: lipoprotein chaperone [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-11   43.9   0.1    2.5e-11   43.7   0.1    1.1  1  T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein 


Domain annotation for each model (and alignments):
>> T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein (PulS_OutS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.1   1.4e-15   2.5e-11      20      99 ..      25     105 ..      17     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.4e-15
                     HHHHHHHHHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--GGG-TT..HHHHHHHHHHHHHHSSS-HHHHHHHHHH CS
  T2SS_PulS_OutS  20 neqieqlsslvaaikYLkqkCnrsdLpddatilkvalkvakqrgWdtdeyqs..lpqrserlYqgLlkdstpkekqCsslnk 99 
                     + + e+l+ l a   YLk+ C+++dLp da+i k  +  a+q +Wd ++y+   +    e +Y+ L   +  ++k+C sl +
      EHU02371.1  25 ESEAEDLADLTAVFVYLKNDCGYQDLP-DAQIRKALVFFAQQNRWDLSNYNNynMKALGEDSYRDLSGIAIANDKKCKSLAR 105
                     567899*********************.5899****************99972256678*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 908.46
//
Query:       EHU02372.1  [L=310]
Description: transposase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-22   80.4   0.0    1.5e-22   80.0   0.0    1.2  1  DDE_3         DDE superfamily endonuclease
    7.7e-09   36.1   0.3    2.3e-08   34.5   0.3    1.9  1  HTH_32        Homeodomain-like domain
    1.7e-08   34.0   0.7    8.5e-07   28.6   0.0    3.2  3  HTH_23        Homeodomain-like domain
    3.6e-06   26.5   0.3    3.6e-06   26.5   0.3    3.0  4  HTH_33        Winged helix-turn helix
    4.2e-06   26.7   0.4    1.9e-05   24.6   0.2    2.1  2  HTH_29        Winged helix-turn helix
     0.0013   18.8   0.2      0.022   14.9   0.1    2.4  2  HTH_28        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.087   12.6   0.2       0.33   10.8   0.0    2.0  2  HTH_38        Helix-turn-helix domain
        0.1   13.1   0.1        0.2   12.2   0.1    1.5  1  LZ_Tnp_IS481  leucine-zipper of insertion element IS481


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   6.6e-26   1.5e-22       2     142 ..     144     283 ..     143     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 6.6e-26
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++  +  f+++l++l+ t+++ak+i li+Dn  iHks++  +++
  EHU02372.1 144 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWL 242
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  EHU02372.1 243 KA-NPKFRVIYQPIYSPWVNHVERLWQALHETITRNHQCSSM 283
                 *9.9*****************************998877765 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     1e-11   2.3e-08       2      73 .]      24     103 ..      23     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1e-11
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallree.p........rWsprqlaarlaeregvkvShstvyriL 73 
                 + rw++ +  +G egLk  p+ gr r+++ e+  ++++ l ++ p        rWs+++la ++++  g  ++ st++r+L
  EHU02372.1  24 IGRWINWFTLSGAEGLKSLPS-GRGRRWPFEHICALLRELVKHsPgdfgyqrsRWSTELLAIKIRDITGCPLHASTIRRWL 103
                 88***************9954.57777**9998777776655526*******************7777888********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.8e-10   8.5e-07      12      50 .]       2      40 ..       1      40 [. 0.93
   2 ?    1.9   0.0     0.091     2e+02      30      38 ..      95     103 ..      93     107 .. 0.88
   3 ?   -1.7   0.1       1.3   2.8e+03      28      40 ..     233     244 ..     231     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.8e-10
      HTH_23 12 lllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                l+l +G++v+ +Ar L + r+ + rw++++  +G+egl+
  EHU02372.1  2 LMLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLK 40
                67888*************************88*****96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.091
      HTH_23  30 srrTvyrwl 38 
                 + +T++rwl
  EHU02372.1  95 HASTIRRWL 103
                 789*****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.3
      HTH_23  28 gvsrrTvyrwlkr 40 
                 + sr T+ rwlk+
  EHU02372.1 233 HKSRETL-RWLKA 244
                 6789999.79986 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   8.7e+03       3      16 ..      48      61 ..      47      63 .. 0.79
   2 !   26.5   0.3   1.6e-09   3.6e-06       3      52 ..      75     124 ..      73     129 .. 0.95
   3 ?    1.6   0.1       0.1   2.2e+02      29      42 ..     208     221 ..     202     222 .. 0.86
   4 ?   -2.3   0.0       1.6   3.5e+03      25      33 ..     281     289 ..     264     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
      HTH_33  3 grWtlarlaqliee 16
                 rW  + +++l++e
  EHU02372.1 48 RRWPFEHICALLRE 61
                58888899999886 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.6e-09
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i++ +g  ++ s+++r+L  +G+ +++++p+   +dp++
  EHU02372.1  75 SRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHK 124
                 69**********************************************98 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.1
      HTH_33  29 rlLkrlGfsyqkPr 42 
                 rlLk+l+ +y++++
  EHU02372.1 208 RLLKHLKATYRRAK 221
                 9**********997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.6
      HTH_33  25 sgvyrlLkr 33 
                 s++++lLk+
  EHU02372.1 281 SSMWQLLKK 289
                 789999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   8.6e-09   1.9e-05       6      55 ..       2      49 ..       1      50 [. 0.89
   2 ?   -1.1   0.0      0.87   1.9e+03      25      33 ..      95     103 ..      93     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 8.6e-09
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                l+l +G  tvs +A+ l++ r+++ rw++ f   G+++l++ + sgr+r+
  EHU02372.1  2 LMLHRGD-TVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLP-SGRGRR 49
                4556676.9********************************99.699985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.87
      HTH_29  25 srrtvyrwl 33 
                 + +t++rwl
  EHU02372.1  95 HASTIRRWL 103
                 568*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.8e-06     0.022       8      52 .]       3      48 ..       1      50 [. 0.88
   2 ?    1.1   0.0       0.2   4.4e+02      25      33 ..      95     103 ..      91     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryeegGiagLvprr.rrpr 52
                 l +G++v+ +Ar l + r+++ rWi+ +   G +gL+  + +r+r
  EHU02372.1  3 MLHRGDTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPsGRGR 48
                456899********************************96437765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
      HTH_28  25 srrtvyrWi 33 
                 + +t++rW+
  EHU02372.1  95 HASTIRRWL 103
                 789*****8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.33      16      39 ..       3      26 ..       1      29 [. 0.91
   2 ?   -1.8   0.0       1.3   2.8e+03      33      39 ..      95     101 ..      95     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                +l +G +++ +Ar L++++s+I R
  EHU02372.1  3 MLHRGDTVSHVARTLCCARSSIGR 26
                7899******************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      HTH_38  33 spsTIsR 39 
                 + sTI R
  EHU02372.1  95 HASTIRR 101
                 78***99 PP

>> LZ_Tnp_IS481  leucine-zipper of insertion element IS481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   9.1e-05       0.2      26      68 ..       8      51 ..       2      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
  LZ_Tnp_IS481 26 rtvaqvarelGvslrtaykwlarfraeGldGlldr.ssrPrrvP 68
                   tv +var l  ++ +  +w++ f   G +Gl    s r rr P
    EHU02372.1  8 DTVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLpSGRGRRWP 51
                  589*********************99999999764256777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2442.03
//
Query:       EHU02373.1  [L=181]
Description: hypoxanthine phosphoribosyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-26   90.2   0.1    1.2e-25   89.9   0.1    1.0  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.019   14.4   0.0    1.1  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.1   1.4e-29   1.2e-25       9     158 ..      12     160 ..       7     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1.4e-29
                   --EEEEEEETTEEEEEE..--GGGEEEEEEETTTHHHHHHHHHHSTT-..EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSH CS
  Pribosyltran   9 paildavarlaaeilee..yngkpdvvvgiargGvpfakiladeLevp..layvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGg 101
                   +ai++++a+l +ei ++  + g+  v+vg +rg+++f  +l + ++vp  ++++ +++y ++ s++   ++ +   l ed++gk VliV+Di+d+G+
    EHU02373.1  12 QAIAARIAELGKEITDHyrDSGSDMVLVGLLRGSFMFMADLCRVIDVPheVDFMTASSYGSGMSSSRDVKILKD--LDEDIRGKDVLIVEDIIDSGN 106
                   78999***********9888999************************98899********99999998888877..********************* PP

                   HHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE-T CS
  Pribosyltran 102 TllaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfelds 158
                   Tl ++ e+L+ ++p+++ i++l+dkp+++e +    +++f +    +++vvgf++d+
    EHU02373.1 107 TLSKVREILRLREPKSLAICTLLDKPERREVDVQVEFVGFAIP---DEFVVGFGIDY 160
                   ****************************************999...*******9997 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.1e-06     0.019      62     149 ..      29     120 ..       6     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-06
     UPRTase  62 elldeekialVpilRaGegmeealrellpea...rvghlglqree.etlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergv 149
                  + + ++++lV +lR+   ++  l +++  +    ++ +  + +  ++ + v +++ L ++i+ + vl+++ +i +G+++ ++ ++L+ r+ 
  EHU02373.1  29 YRDSGSDMVLVGLLRGSFMFMADLCRVIDVPhevDFMTASSYGSGmSSSRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILRLREP 120
                 44555688889999987777777776665443014444444443325678899*****************************9999987553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1355.24
//
Query:       EHU02374.1  [L=221]
Description: carbonic anhydrase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-50  171.4   0.0    2.1e-50  171.1   0.0    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.0   1.2e-54   2.1e-50       2     154 ..      38     186 ..      37     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 1.2e-54
                 EEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHHHCHH CS
      Pro_CA   2 lvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalkaekseeeagaidkwlekirealekvee 100
                 l+igCsDSRvp+e +t+ +pG+lFv+rnv+nlv ++d ++l++++yAvevl+v+hi+V+GH++CG+v+aa+++     e g id+wl +ir+   k++ 
  EHU02374.1  38 LWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVEVLEVEHIIVCGHYGCGGVQAAMDN----PELGLIDNWLLHIRDLWYKHSV 132
                 8*******************************************************************99984....2479***************998 PP

                 HHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS.-EEEEEEEETTTT CS
      Pro_CA 101 elesekekearerlleeenVaeqlenLlekpvvreavekgk.lkvhGlvydletG 154
                  l +   +++r ++l+e nV+eq+ nL +++++++a+++g+ +++hG+vy +++G
  EHU02374.1 133 LLGEL-PPDKRLDKLCEINVVEQVYNLGHSTILQSAWKRGRkVSLHGWVYGIQDG 186
                 77665.688888888*************************99************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1750.82
//
Query:       EHU02375.1  [L=308]
Description: putative ATP-binding component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-32  111.4   0.0    8.8e-32  110.5   0.0    1.5  1  ABC_tran  ABC transporter
    1.8e-12   47.7   1.8    1.2e-07   31.9   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    5.9e-05   22.9   0.0      0.046   13.4   0.1    2.1  2  AAA_15    AAA ATPase domain
      0.001   18.5   0.2      0.029   13.8   0.2    2.2  1  SMC_N     RecF/RecN/SMC N terminal domain
     0.0068   16.1   0.1      0.015   15.0   0.1    1.5  1  AAA_29    P-loop containing region of AAA domain
     0.0081   16.9   0.1      0.025   15.3   0.1    1.9  1  DUF4162   Domain of unknown function (DUF4162)
     0.0092   15.7   0.1      0.026   14.3   0.1    1.9  1  AAA_30    AAA domain
  ------ inclusion threshold ------
      0.021   14.5   0.0      0.034   13.8   0.0    1.3  1  SRP54     SRP54-type protein, GTPase domain
      0.024   14.2   0.0      0.052   13.1   0.0    1.5  1  AAA_27    AAA domain
      0.035   14.6   0.3      0.071   13.6   0.3    1.6  1  AAA_23    AAA domain
       0.13   11.7   0.5        2.9    7.3   0.0    2.4  2  Mei4      Meiosis-specific protein Mei4
       0.16   12.0   0.9        1.9    8.5   1.0    2.3  1  DUF87     Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   5.9e-35   8.8e-32       1     137 []      21     165 ..      21     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 5.9e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 lk ++l++++g  +a++G+nGaGKSt + +++ l+++ eG++++ g dl++ +   +++++g +pqe +++p  tv +              e+ +++e
  EHU02375.1  21 LKGIDLNVEAGDFYALLGPNGAGKSTTIGIISSLVNKSEGSVRVFGYDLEK-DVVNAKRQLGLVPQEFNFNPFETVMQIvvnqagyygverrEALQRAE 118
                 7899**********************************************9.999*******************99998999*****9998888888** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 k+l++l+l e++++++    + LSgG+k+r+++aral+ +pkll+lDEpta
  EHU02375.1 119 KYLKQLDLWEKRHERA----RMLSGGMKRRLMIARALMHAPKLLILDEPTA 165
                 **********999999....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7   1.1e-05     0.017       1      22 [.      33      54 ..      33      74 .. 0.83
   2 !   31.9   0.0   7.9e-11   1.2e-07     167     298 ..      78     195 ..      63     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + +l GpNg+GKS+ + +++ l
  EHU02375.1 33 FYALLGPNGAGKSTTIGIISSL 54
                5789***************998 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 7.9e-11
      AAA_21 167 gllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDE 265
                 ++l ++  +f+f++  + +q  v++    + e +  + + e++ +  +++             +   ar lS G+kr   +++  l  ++  +ll++DE
  EHU02375.1  78 RQLGLVPQEFNFNPFETVMQIVVNQAGYYGVERREALQRAEKYLKQLDLWEK-----------RHERARMLSGGMKRR-LMIARALMHAP--KLLILDE 162
                 5556666666666666666666666666666666666666666666666655...........66778999*******.77777777666..8****** PP

      AAA_21 266 pEngLHPkllrrllellkelsrngaQviltTHS 298
                 p +g + +l r+ + +lk+l++ g+ +iltTH 
  EHU02375.1 163 PTAGVDIELRRSMWVFLKDLNAQGTTIILTTHY 195
                 ********************************6 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.1e-05     0.046      19      58 ..      28      74 ..      20      93 .. 0.72
   2 !    7.5   0.0    0.0019       2.9     295     364 ..     135     194 ..      80     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
      AAA_15 19 idlseeltvliGkNnsGKSsilealdlFlnnkekkn.........kkvi 58
                ++  + +  l G+N++GKS+ + ++  + n++ + +         k+v+
  EHU02375.1 28 VEAGD-FYALLGPNGAGKSTTIGIISSLVNKS-EGSvrvfgydleKDVV 74
                33344.999*********************87.3334555555554444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
      AAA_15 295 nknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                  + + G++r l ++  + +a k          l+++EP a   +++ ++++  lk+l  ++   +i+tTH
  EHU02375.1 135 RMLSGGMKRRLMIARALMHAPKL---------LILDEPTAGVDIELRRSMWVFLKDLNAQGT-TIILTTH 194
                 56667777777777777766666.........*************************99997.9****** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.9e-05     0.029      25     209 ..      32     203 ..      18     216 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                  f a++GpNG+GKs  +  i+ +  ++   ++r         + + ++ v +a+ ++ +  ++ +     + +++  +++ ++   y ++++e+  +  
  EHU02375.1  32 DFYALLGPNGAGKSTTIGIISSLVNKS-EGSVRVF------GY-DLEKDVVNAKRQLGLVPQEFN----FNPFETVMQIVVNQAGYYGVERREAL-QRA 117
                 58899**********999996555533.3244432......22.444444444444433222222....33445555555555556666666553.344 PP

                 HHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                 ++ l++ ++ ++      +LSgG k  +++a       ++   l +lDe  a  D + ++ +  +lk  +  aQ   i l+++ le+a+ l+
  EHU02375.1 118 EKYLKQLDLWEKrherarMLSGGMKRRLMIA----RALMHAPKLLILDEPTAGVDIELRRSMWVFLKDLN--AQGTTIILTTHYLEEAEMLC 203
                 5555555555444555559999999855544....44455556899999999999999999999999988..55555555555666665443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     1e-05     0.015      17      40 ..      26      49 ..      18      61 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTllD 40
                ++++  +++ l Gp+G+GKST + 
  EHU02375.1 26 LNVEAGDFYALLGPNGAGKSTTIG 49
                555544599************984 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.7e-05     0.025       9      78 ..     226     297 ..     219     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
                 TS-SSEEEEE.-------..---EEEE-TTS-EEEEE-------------.----EEEEEEEE---HHHHHH CS
     DUF4162   9 sygknrieve.adaeelleepgveeveeeggelelkledeeaanellkal.tsgveirsFeeeePsLndIFi 78 
                 +++++++ +  a  + l +++g++    ++++le+++  e+  n+++++l ++gv++ s++ +   L++ F+
  EHU02375.1 226 KLKSETFILDlAPRSPLPSLEGFQYRLVDTSTLEVEVLREQGLNSVFSQLsAQGVQVLSMRNKANRLEELFV 297
                 566666666655566666666633333344679*****************77*******************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.7e-05     0.026      20      53 ..      33      66 ..      24     194 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrviglA 53
                + +l Gp G+GK+t+++ +  ++++++g+v ++ 
  EHU02375.1 33 FYALLGPNGAGKSTTIGIISSLVNKSEGSVRVFG 66
                67899*******************9976666554 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05     0.034       4      52 ..      34      84 ..      32     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS..TTHHHHHHHHH CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR..aaAveQLktla 52
                ++l+G++GaGK tt++ ++ l++k++ +v +   D  +  + A  QL  + 
  EHU02375.1 34 YALLGPNGAGKSTTIGIISSLVNKSEGSVRVFGYDLEKdvVNAKRQLGLVP 84
                6799*********************99999999987653345666666555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05     0.052      19      49 ..      24      54 ..      16      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisdl 49
                +d++ e+ d+  ++GpN AGKst++  is+l
  EHU02375.1 24 IDLNVEAGDFYALLGPNGAGKSTTIGIISSL 54
                78899999****************9888877 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   4.8e-05     0.071      20      40 ..      32      52 ..      17     144 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.8e-05
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 ++++ GpNGaGK+T +  i 
  EHU02375.1 32 DFYALLGPNGAGKSTTIGIIS 52
                57899**********996554 PP

>> Mei4  Meiosis-specific protein Mei4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0019       2.9     141     213 ..      68     138 ..      55     159 .. 0.88
   2 ?    1.8   0.1     0.092   1.4e+02     151     198 ..     251     301 ..     248     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
        Mei4 141 qlldyllarykipllktkeidlralsiitqllddvnasnlilvkslkkleeflkeLeqilLnskslariqsqe 213
                 +l   ++++ + + l ++e++++  ++++q +  vn     +v+ ++ l+  +k L+q+ L +k  +r  + +
  EHU02375.1  68 DLEKDVVNAKRQLGLVPQEFNFNPFETVMQIV--VNQAGYYGVERREALQRAEKYLKQLDLWEKRHERARMLS 138
                 78889999999999******************..9999*********************99999988887765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.092
        Mei4 151 kipl...lktkeidlralsiitqllddvnasnlilvkslkkleeflkeLeq 198
                 ++     l+++ +  ++l+ ++  l    ++ l  ++  ++lee  + L+q
  EHU02375.1 251 RLVDtstLEVEVLREQGLNSVFSQLSAQGVQVLSMRNKANRLEELFVGLTQ 301
                 555544477777889*******************************99998 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0    0.0013       1.9      27      57 ..      35      64 ..      23     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
       DUF87 27 AilgsTGsGKSntvavLleellekkgatili 57
                A lg  G+GKS+t++++ + l++k  +++ +
  EHU02375.1 35 ALLGPNGAGKSTTIGIISS-LVNKSEGSVRV 64
                899999********97655.55466665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 2530.30
//
Query:       EHU02376.1  [L=256]
Description: putative membrane component of an ABC superfamily transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-39  133.0  25.0    9.5e-39  133.0  25.0    1.9  2  ABC2_membrane    ABC-2 type transporter
    2.6e-05   23.5  28.9    2.6e-05   23.5  28.9    1.5  2  ABC2_membrane_3  ABC-2 family transporter protein
  ------ inclusion threshold ------
      0.061   12.8  11.4      0.008   15.7   7.2    1.7  2  CcmB             CcmB protein
       0.31   10.9   9.1       0.61    9.9   3.1    3.1  2  CoxIIa           Cytochrome c oxidase subunit IIa family
        5.2    7.4   6.7       0.94    9.8   1.0    2.5  3  Orf78            Orf78 (ac78)


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0  25.0   2.6e-42   9.5e-39       3     209 ..       9     218 ..       7     219 .. 0.93
   2 ?    0.6   0.7     0.091   3.3e+02     106     125 ..     225     244 ..     221     253 .. 0.55

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 2.6e-42
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgn.lg..nsedglnr..pgllffsvlflafsaltsvapvferergvlerelvsplysl 93 
                    +k ++ +e+ ++ r + ++l+ ++i++ l++++fg ++g  +g  n  +++++  pgl+++sv+++a+++++s+ +++ + ++++e++lv+p+ ++
     EHU02376.1   9 LKSIWAKEVNRFARIWIQTLVPPVITMTLYFIIFGNLIGArIGdmNGFSYMQFivPGLIMMSVITNAYANVASS-FFSAKFQRNIEELLVAPV-PT 102
                    6899***********************************6444444444554499************7777777.******************.** PP

  ABC2_membrane  94 sayvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwl 189
                    + +++++v + ++++++++++++++++f+v +++ +++++ ++lllta+++s  gl+++++a++f+d+s++ ++vl+pl++l+G+f++++ +p ++
     EHU02376.1 103 HIIIAGYVGGGVARGICVGVLVTAVSLFFVPFHVHSWLMVAITLLLTAVLFSLAGLINAVFARTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFW 198
                    **********************************888*******************************************************77** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnl 209
                    q++++lnP++y+++++r ++
     EHU02376.1 199 QAVSKLNPVVYMISGFRFGF 218
                    *****************876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.091
  ABC2_membrane 106 pvsllqalifllivyflvgl 125
                    p++l +++++ +iv+f + +
     EHU02376.1 225 PLTLTMSVLIAFIVVFYIAV 244
                    55555555555555444333 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.32   1.2e+03       7      24 ..      27      44 ..      21      56 .. 0.54
   2 !   23.5  28.9   7.2e-09   2.6e-05     158     344 ..      57     245 ..      48     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.32
  ABC2_membrane_3  7 tlllPiilvlllglifsn 24
                     tl+ P+i ++l+++if+n
       EHU02376.1 27 TLVPPVITMTLYFIIFGN 44
                     333345555555555543 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 7.2e-09
  ABC2_membrane_3 158 nvasflvg.liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll.afglgipfg.nlglllllfllf 248
                      ++ +f+v+ li++ +i+  ++++a+s+ + k +r +e +lv++v +  ++ + + g ++ ++ + +l++++ +f   +pf  +++l++   ll 
       EHU02376.1  57 SYMQFIVPgLIMMSVITNAYANVASSFFSAKFQRNIEELLVAPVPTHIIIAGYVGGGVARGICVGVLVTAVsLFF--VPFHvHSWLMVAITLLL 148
                      56678888899*********************************9999999999999999999999999987999..****9999999999999 PP

  ABC2_membrane_3 249 glayialgyllsslfknsetaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrlitgdplweillsliilalfavvyll 341
                        ++ +l+ l+ ++f ++ + ++li+ + l+++ ++gg+f  l  lp +++ ++ ++P ++ + g+     g + +++ l + +l++f+vv+ +
       EHU02376.1 149 TAVLFSLAGLINAVFARTFDDISLIPTFVLTPLTYLGGVFYsLTLLPPFWQAVSKLNPVVYMISGFRFGFLGIHDVPLTLTMSVLIAFIVVFYI 242
                      999999999999999999998888888888888888888666************************87788888899***************99 PP

  ABC2_membrane_3 342 lal 344
                      +++
       EHU02376.1 243 AVY 245
                      865 PP

>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   7.2   2.2e-06     0.008      24     151 ..      37     166 ..      18     188 .. 0.82
   2 ?   -2.2   0.1      0.68   2.4e+03     183     202 ..     222     241 ..     206     251 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.2e-06
        CcmB  24 lFfllvvtllplavGPdt..allsriapgilWvaallaslLsldrlfaadfedGsLellllapvplellvlaKalAhwlltglplvllapllalllnle 120
                 l+f++   l++  +G       ++ i pg++ ++++  +   +   f + + +  +e ll+apvp ++++++ +          +vl++++   ++ ++
  EHU02376.1  37 LYFIIFGNLIGARIGDMNgfSYMQFIVPGLIMMSVITNAYANVASSFFSAKFQRNIEELLVAPVPTHIIIAGYVGGGVARGICVGVLVTAVSLFFVPFH 135
                 5667777888888886542268999**********99999999888888888899************9999887766555556789999999999**** PP

        CcmB 121 aaalgllaltLllGtpalsllgavgaAltvg 151
                 ++++ ++a+tLll +  +sl g + a  + +
  EHU02376.1 136 VHSWLMVAITLLLTAVLFSLAGLINAVFART 166
                 **********************999877655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.68
        CcmB 183 egldveaalalllaltvvtl 202
                 ++++++ ++++l+a+ vv+ 
  EHU02376.1 222 HDVPLTLTMSVLIAFIVVFY 241
                 44555555555555555443 PP

>> CoxIIa  Cytochrome c oxidase subunit IIa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.027        98      10      27 ..     172     189 ..     170     191 .. 0.86
   2 ?    9.9   3.1   0.00017      0.61      12      33 .]     231     251 ..     227     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHHHHHHH CS
      CoxIIa  10 vivvLtatILvFWfgvFy 27 
                 +i   ++t L++ +gvFy
  EHU02376.1 172 LIPTFVLTPLTYLGGVFY 189
                 566779999********9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHHHHHHHHT- CS
      CoxIIa  12 vvLtatILvFWfgvFyvFlsRG 33 
                  vL+a+I vF   v+++ ++RG
  EHU02376.1 231 SVLIAFIVVFYIAVYFL-IQRG 251
                 69*************98.7887 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.2   4.5e+03      66      84 ..      23      41 ..      13      44 .. 0.58
   2 ?   -1.3   0.1      0.75   2.7e+03      74      88 ..     118     132 ..     112     137 .. 0.83
   3 ?    9.8   1.0   0.00026      0.94      67      92 ..     227     252 ..     222     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
       Orf78 66 llisllavvcvlvllyviy 84
                ++i+ l+  ++ + ly i+
  EHU02376.1 23 IWIQTLVPPVITMTLYFII 41
                5555555555555555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.75
       Orf78  74 vcvlvllyviyYfvi 88 
                 +cv vl+ +++ f++
  EHU02376.1 118 ICVGVLVTAVSLFFV 132
                 899999999988876 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00026
       Orf78  67 lisllavvcvlvllyviyYfvilrer 92 
                  +++ ++++ +v++y+ +Yf+i r r
  EHU02376.1 227 TLTMSVLIAFIVVFYIAVYFLIQRGR 252
                 56777889999***********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1800.60
//
Query:       EHU02377.1  [L=126]
Description: aspartate 1-decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-47  158.4   0.1    6.6e-47  158.2   0.1    1.0  1  Asp_decarbox  Aspartate decarboxylase


Domain annotation for each model (and alignments):
>> Asp_decarbox  Aspartate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.1   3.7e-51   6.6e-47       1     114 [.       1     114 [.       1     115 [. 0.99

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 3.7e-51
                   XEEEEEEEEEEEEEXXEEETTXXXXEEEEHHHHHHCT--TTBEEEEEETTT--EEEEEEEEESTTTT-EEEEGGGGGG--TT-EEEEEEEEEEEHHH CS
  Asp_decarbox   1 mlrtllksKihratvteaelnYeGSitideelleaagileyekvqvvnvnngeRletYvikgergsgviclnGaaarlvqvgdkviiiayaqleeee 97 
                   m r +l++K+hr++vt+a+lnYeGS++id+++l+a+gil+ye+++++nv+ng+R++tY+i++ergs++i++nGaaar++ +gd++ii++y q++++e
    EHU02377.1   1 MIRMVLQGKLHRVKVTQADLNYEGSCAIDQDFLDASGILQYEAIDIYNVTNGQRFSTYAIAAERGSKIISVNGAAARCACEGDILIICSYVQVDDAE 97 
                   8899********************************************************************************************* PP

                   HHH---EEEEE-TTS-E CS
  Asp_decarbox  98 akelkpkvvlvdeknri 114
                   a++++pkv +++ +n++
    EHU02377.1  98 ARQWQPKVAYFEGDNQM 114
                   ***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 942.21
//
Query:       EHU02378.1  [L=284]
Description: pantothenate synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-102  342.0   0.0   2.2e-102  341.8   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase
  ------ inclusion threshold ------
      0.033   14.4   0.0      0.061   13.5   0.0    1.6  1  CTP_transf_like  Cytidylyltransferase-like
       0.14   12.4   0.0        5.4    7.2   0.0    2.1  2  Mannitol_dh      Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.8   0.0  3.7e-106  2.2e-102       2     265 ..       3     278 ..       2     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 341.8 bits;  conditional E-value: 3.7e-106
                      EEESHHHHHHHHHHHHHTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-SEEE---HH CS
  Pantoate_ligase   2 iiktvaelrellkelrkegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvdlvFaPsve 95 
                      ii+t+  lr+ ++++r++gk+++lVpTmG+LHeGHl+Lv++a+e++d+v+vS+FvNp+qF++ +dl++YPrtl++D+e+l+++ vd+vFaPs +
       EHU02378.1   3 IIDTLPMLRREVRRWRQQGKRIALVPTMGNLHEGHLTLVDEARERADIVIVSVFVNPMQFDRPDDLARYPRTLQEDCEKLNRHAVDVVFAPSPA 96 
                      67889999************************************************************************************** PP

                      HHST......EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEEEEEEEEBETTSEBTTGGG CS
  Pantoate_ligase  96 emyp......ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpveivavpivReedgLAlSSRN 183
                      e+yp      t vev+ ls+ legasrpghFrGVat+v+kLfn+vqpd+a+fG+KD+qqla+ir++v+d+ +++eiv+vp+vR++dgLAlSSRN
       EHU02378.1  97 EVYPhglanqTFVEVPVLSSLLEGASRPGHFRGVATIVSKLFNLVQPDIACFGEKDFQQLAIIRKMVADMGFDIEIVGVPTVRARDGLALSSRN 190
                      ***999999999********************************************************************************** PP

                      GGS-HHHHHHTTHHHHHHHHHH........BHHHHHHHHHHHHHTHTTEEEEEEEEEETTTSS..BSSB.SEEEEEEEEEETTEEEEEEE CS
  Pantoate_ligase 184 kyLseeerkaAlvlykaLkaak........eaealkeaakeeleeeelekadyveivdaetleeleleeekkavllvaakvgkvrLiDni 265
                       yL+e+erk A+ l+++++a++        +++++ e+a+++l+e++l + d ++i+daetl++l+++ +++av+l+aa++g++rLiDn 
       EHU02378.1 191 GYLTEDERKLAPGLSQVMNAMAarlangerQIDDIIEDATRSLQEKGL-RPDGLAICDAETLQPLTVD-SQRAVVLMAAWLGNARLIDNQ 278
                      *********************977777655555555666666766664.47***********997643.4779****************5 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     1e-05     0.061       9      73 ..      33      99 ..      31     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
                     --HHHHHHHHHHHHHSSESEEEEEESSTHCSST-....SCSSTHHHHHHHHHHHTTCTTEEEEEEESEH CS
  CTP_transf_like  9 iHlGHlrlleqakklleedlivgvpsdeppkkkk....kplasaeeRlemlelakevdevisvdpwelt 73
                     +H GHl+l+++a++  +  +iv v  ++          + + +++e +e l +   vd v+ ++p e+ 
       EHU02378.1 33 LHEGHLTLVDEARERADI-VIVSVFVNPMQFDRPddlaRYPRTLQEDCEKLNRH-AVDVVFAPSPAEVY 99
                     7*****************.66666555544433212446666677777766665.56666666666665 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.018   1.1e+02       8      49 ..      30      71 ..      29      90 .. 0.85
   2 ?    7.2   0.0    0.0009       5.4      18      89 ..     158     230 ..     146     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.018
                 -SHHHHHTHHHHHHHHTT--TT-EEEEEE-STTHHHHHHHTT CS
  Mannitol_dh  8 aGnfhRahqayiddLlaeegldwgivevnlrevdareaLkaq 49
                 +Gn+h +h+  +d+  +  ++ +  v vn+++ d++++L+ +
   EHU02378.1 30 MGNLHEGHLTLVDEARERADIVIVSVFVNPMQFDRPDDLARY 71
                 69*******999999888999999999999999999999865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0009
                  HHHHHHTT--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-.HHHHHHHHT CS
  Mannitol_dh  18 yiddLlaeegldwgivevnlrevdareaLkaqdelyvviekgeeskearlvgsvnavlsveed.lealieama 89 
                   i +++a+ g+d++iv+v    +++  aL+ ++++ ++ e++ +   +++ +++ a l   e+ ++++ie ++
   EHU02378.1 158 IIRKMVADMGFDIEIVGVPTVRARDGLALSSRNGYLTEDERKLAPGLSQVMNAMAARLANGERqIDDIIEDAT 230
                  67889999***********99999999**************98999999999998877666655888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2415.89
//
Query:       EHU02379.1  [L=264]
Description: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.9e-107  356.3   0.6     1e-106  356.1   0.6    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
     0.0018   18.2   0.0     0.0033   17.3   0.0    1.4  1  Asp_Glu_race     Asp/Glu/Hydantoin racemase
  ------ inclusion threshold ------
       0.05   13.2   0.1      0.061   12.9   0.1    1.3  1  Cu-oxidase_4     Multi-copper polyphenol oxidoreductase lacca
       0.13   11.7   0.1       0.13   11.7   0.1    2.0  3  PEP_mutase       Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.1   0.6  2.3e-110    1e-106       2     258 ..       4     258 ..       3     259 .. 0.99

  Alignments for each domain:
  == domain 1  score: 356.1 bits;  conditional E-value: 2.3e-110
  Pantoate_transf   2 vtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqa 95 
                      +t+++lr+ k++g+k+a+lTayd+++A+l+++ g++v+LVGDslgm+v+g++stlpvt+ +++yht+aV+rga++al++adlPf+sy a+++q+
       EHU02379.1   4 TTLSHLRQCKASGKKFATLTAYDFSFARLFADEGIQVLLVGDSLGMTVQGHDSTLPVTVSDIAYHTAAVRRGAPHALLLADLPFMSY-ATPQQT 96 
                      6899***********************************************************************************.****** PP

  Pantoate_transf  96 lenAarllkeggadavKleggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaelak 189
                      ++nAa+l+++ ga++vKlegga++a+ v++l+e+ +pV+gH+GltPqsvn +ggykvqg++e+ ae+l++da+ale+aGa+++vlE+vp +la+
       EHU02379.1  97 FDNAAQLMRA-GANMVKLEGGAWLADSVHMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRDEAGAEQLMADALALEAAGAQLMVLECVPVALAQ 189
                      *********9.*********************************************************************************** PP

  Pantoate_transf 190 eiteklsiptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelaesieeavkaYaeevkegsFPa 258
                      ++t++l ip+IGIGAG+ +dGq+lv+hD++g+t  + pkf+k++++ + +i++a+++Y++ev++gs+Pa
       EHU02379.1 190 RVTQALAIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAETGDIRAAIRRYIAEVEAGSYPA 258
                      ********************************************************************7 PP

>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.3e-07    0.0033      51      99 ..     156     203 ..     137     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.3e-07
                   T..THHHHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEECH CS
  Asp_Glu_race  51 gddpvlklleaakkLekagadaiviaCnTahavadelqkkikiPvlgiv 99 
                   ++  +++l+++a +Le+aga++ v+ C    a+a+++++++ iPv+gi 
    EHU02379.1 156 DEAGAEQLMADALALEAAGAQLMVLECVPV-ALAQRVTQALAIPVIGIG 203
                   3444569**********************9.****************85 PP

>> Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.4e-05     0.061      62     108 ..     153     197 ..      85     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
                   GGCSSSS..B..-SEEEESSTTSEEEEEESSSEEEEEEETTSSEEEE CS
  Cu-oxidase_4  62 aakgsaeeeeleaDalvtdepgvalavltADCvPvlladpkgkvvaa 108
                   +++++a +e+l aDal  + +g+ l+v    CvPv la+++++++a+
    EHU02379.1 153 QGRDEAGAEQLMADALALEAAGAQLMV--LECVPVALAQRVTQALAI 197
                   344444455567******999998855..58************9996 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.8e-05      0.13       1     107 [.       9     116 ..       9     136 .. 0.88
   2 ?   -2.0   0.1      0.44     2e+03     165     175 ..     170     180 ..     149     203 .. 0.53
   3 ?   -2.6   0.1      0.65   2.9e+03     151     169 ..     236     254 ..     231     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
  PEP_mutase   1 lraLhakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevv.slPlivDle.dGygespeevaetvrrliaa 97 
                 lr+ +a+g+ +  + a+D   a+++++ g++ l ++     +++G++ +  ++++ +  +++a+ +   +  l++Dl    y+  p++  ++ ++l++a
  EHU02379.1   9 LRQCKASGKKFATLTAYDFSFARLFADEGIQVLLVGDSLGMTVQGHDSTLPVTVSDIAYHTAAVRRGApHALLLADLPfMSYAT-PQQTFDNAAQLMRA 106
                 5777889999999***********************999999**********************9988456779***8357765.99************ PP

  PEP_mutase  98 GvvgvniEDk 107
                 G+ +v +E  
  EHU02379.1 107 GANMVKLEGG 116
                 *******965 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.44
  PEP_mutase 165 YaeAGAdgvfv 175
                   +AGA+ ++ 
  EHU02379.1 170 LEAAGAQLMVL 180
                 44444443332 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.65
  PEP_mutase 151 agagleeaieRaraYaeAG 169
                 + +++  ai+R  a +eAG
  EHU02379.1 236 ETGDIRAAIRRYIAEVEAG 254
                 5677899999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2119.74
//
Query:       EHU02380.1  [L=161]
Description: 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-37  127.5   0.0    3.7e-37  127.3   0.0    1.0  1  HPPK      7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase


Domain annotation for each model (and alignments):
>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0     2e-41   3.7e-37       1     112 []       5     134 ..       5     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 2e-41
                 EEEEEE-SSSHHHHHHHHHHHHHH....EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--C...STS-BS-EEEEEEET CS
        HPPK   1 ylalGsNlgdreanleealealee....kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEkelgrer...rwgpRtlDlDillyg 89 
                 ylalGsNl d+ +++++al+al++    + +++Ss+y+t+p+   dqpd+lNa+v++et+ls+e+ll+++++iE+e+gr+r   rwgpRtlD+Di+l+g
  EHU02380.1   5 YLALGSNLADPLHQIDAALSALDAltdvQRIATSSFYRTPPYgppDQPDYLNAAVALETTLSAEALLDETQRIEREHGRVRkaeRWGPRTLDIDIMLFG 103
                 89********************7777666789**********9988*********************************965656************** PP

                 ........EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  90 ........ltlPhprlaeraFvlvplaelap 112
                         l++Ph ++ +raF+lvpl+e+ap
  EHU02380.1 104 seqihserLIVPHYDMLNRAFMLVPLLEIAP 134
                 *****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1313.64
//
Query:       EHU02381.1  [L=443]
Description: poly(A) polymerase I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-40  135.8   1.2    7.1e-40  135.8   1.2    1.7  2  PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
    8.1e-40  136.2   0.1    1.8e-39  135.0   0.1    1.6  1  PolyA_pol        Poly A polymerase head domain
    5.8e-19   67.6   0.2    2.2e-18   65.7   0.1    2.2  2  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym


Domain annotation for each model (and alignments):
>> PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.3   7.7e+03      46      63 ..     174     191 ..     173     195 .. 0.82
   2 !  135.8   1.2   1.2e-43   7.1e-40       2     120 .]     312     431 ..     311     432 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
  PolyA_pol_arg_C  46 krqgkrakrllehprFra 63 
                       r +++++r+l+ +rF a
       EHU02381.1 174 TRYREDPMRMLRVARFAA 191
                      577889999999999988 PP

  == domain 2  score: 135.8 bits;  conditional E-value: 1.2e-43
  PolyA_pol_arg_C   2 glspvdAlalAadevleeqvkkvaiprrftadmreIWalQprlekrqgkrakrllehprFraayDfLlLraesgev..leelaewWtefqeade 93 
                      gl+++dA+alA+++ l+e ++ +aip+r+t+ +r+IW+lQ+r+++r+gkra++l+ehp+FraayD+L+Lrae ++   l +l +wW efq a +
       EHU02381.1 312 GLTYYDAFALAMNDTLDEACRALAIPKRITSLIRDIWQLQLRMSRRHGKRAWKLMEHPKFRAAYDLLALRAEVENNpeLLRLSKWWGEFQVAAP 405
                      899********************************************************************66666558899************ PP

  PolyA_pol_arg_C  94 eereelikelkeeeakkkkrrrrrrrk 120
                       ++++++++l+++ a  ++r rr+rr+
       EHU02381.1 406 PQQKTMLNTLGDDPAP-RSRTRRPRRR 431
                      ************9987.6666666654 PP

>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.1     3e-43   1.8e-39       1     126 []      34     167 ..      34     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 3e-43
                 EEEETHHHHHHHTT---CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH...............HH CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatdaapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekste............sl 87 
                 +ylvGG VRDlllg++pkD+D++t+a+pe+++kl+r+++ +    g++f++++v+++ +++evatfR +++ +++++ +++++ +            s+
  EHU02381.1  34 AYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRLV----GRRFRLAHVMFGPEVIEVATFRGHHQIEENSEDHNNSQRAqsgmllrdnifgSI 128
                 6****************************************....***********************99988777665555444699*********** PP

                 HHHHCTSSBGGGS-EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol  88 eeDlkrRDftiNalaynlnkgkvlDlfgGikdLkskvir 126
                 e+D++rRD+tiN+l+y++++ +v D++gG++dL++++ir
  EHU02381.1 129 EDDAQRRDLTINSLYYSVADFSVRDYVGGLNDLQQGIIR 167
                 ************************************997 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   3.7e-22   2.2e-18       1      61 [.     194     254 ..     194     257 .. 0.97
   2 ?   -2.5   0.0      0.78   4.6e+03      33      47 ..     364     378 ..     362     379 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 3.7e-22
  PolyA_pol_RNAbd   1 gFtIepeTaaairklaplLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPela 61 
                      +++I+peTa++i++la+lL++++++R+feE lKlL++g+++ ++ +L+e++L+++lfP la
       EHU02381.1 194 NMRIAPETAEPIPRLASLLRDVPAARLFEESLKLLQAGYGYSTWLKLCEYQLFQPLFPTLA 254
                      689*******************************************************996 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.78
  PolyA_pol_RNAbd  33 KlLlsghpeaglelL 47 
                      Kl+ +++ +a+++lL
       EHU02381.1 364 KLMEHPKFRAAYDLL 378
                      99999*****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3747.18
//
Query:       EHU02382.1  [L=293]
Description: glutamyl-Q tRNA(Asp) synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-44  150.4   0.0    1.6e-42  145.6   0.0    2.0  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0   8.7e-47   1.6e-42       5     280 ..       9     259 ..       6     272 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 8.7e-47
                   EE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE-STH CS
  tRNA-synt_1c   5 RfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvcectk 101
                   RfaP+P+G+LH G+  aal +yl A++++G+ ++RieD dp re+++a ++il++l++ g++wd +++ qs+r d +++  + L ++ + Y c c+ 
    EHU02382.1   9 RFAPSPSGELHFGSLIAALGSYLSARAQHGRWLVRIEDIDPPREVAGAATRILHQLEQYGLHWDGEVMWQSQRHDAYRDALQWLRAHRQSYYCTCSR 105
                   ************************************************************************************************9 PP

                   HHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGGS.BTTTBTSTSEEE-HHHHHHHHHHH CS
  tRNA-synt_1c 102 eeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqei.hdlvivksdiyPtYdfavvidDal 197
                    +++++ +            yd+++++          +  e+a +Rl++      +f+D +rg    ++    +d++i++ d++  Y++avv+dD+ 
    EHU02382.1 106 SRIQQLGGF-----------YDGHCRDAG--------SGPENAALRLRQHAPV-FQFEDRLRGTLVADQRLAeEDFIIHRRDGLFAYNLAVVVDDHH 182
                   999887755...........99****999........5688999***998874.6*********9998865459*********************** PP

                   TT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HH CS
  tRNA-synt_1c 198 eeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpe 280
                    ++t ++r+ + ++ t ++i+l++++g++vp + h++l ++++++klSK + +          ++d+r  l+++lr lG +++
    EHU02382.1 183 QGVTEIVRGADLIEPTVRQIALYRQFGWAVPDYLHLPLAITADGHKLSKQNHAPA------LPDGDPRPCLVQALRFLGQPVS 259
                   *************************************************988776......5778899999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2252.77
//
Query:       EHU02383.1  [L=151]
Description: RNAP-binding protein modulating ppGpp and iNTP regulation [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-10   40.2   2.1    3.9e-10   39.5   2.1    1.3  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.044   13.8   0.2      0.078   13.0   0.2    1.3  1  DZR           Double zinc ribbon


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   2.1   4.3e-14   3.9e-10       3      35 ..     111     143 ..     110     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 4.3e-14
  zf-dskA_traR   3 ygsCeeCGEpIpeaRlralPgarlCveCqekae 35 
                   +g+C+ CG +I+  Rl+a+P+a lC++C++ ae
    EHU02383.1 111 FGYCDSCGVEIGIRRLEARPTADLCIDCKTLAE 143
                   9***************************98766 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   8.7e-06     0.078       9      39 ..     108     143 ..     104     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-06
         DZR   9 ppdarfCseCgtk.....lkavaaedrCpsCgekvd 39 
                 ++d  +C+ Cg +     l+a +++d C  C++ ++
  EHU02383.1 108 DDDFGYCDSCGVEigirrLEARPTADLCIDCKTLAE 143
                 56778*******977666776667********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      841  (0.0469072); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1161.64
//
Query:       EHU02384.1  [L=234]
Description: putative DNA-binding transcriptional regulator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-48  163.8   0.0    2.4e-48  163.5   0.0    1.1  1  SfsA      Sugar fermentation stimulation protein RE domain
    7.5e-21   74.1   0.0    1.3e-20   73.3   0.0    1.4  1  SfsA_N    SfsA N-terminal OB domain
  ------ inclusion threshold ------
        0.2   11.7   0.0       0.33   11.0   0.0    1.4  1  DUF3883   Domain of unknown function (DUF3883)


Domain annotation for each model (and alignments):
>> SfsA  Sugar fermentation stimulation protein RE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   4.1e-52   2.4e-48       2     137 ..      84     222 ..      83     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 4.1e-52
                 HHHHHHHHHHEE...........EEES-EE..TTEE-SEEEE-S.SSEEEEEEEE--EE..EEEEE-SS--HHHHHHHHHHHHHHHTT-EEEEEEEE-S CS
        SfsA   2 lpnklveealesgli.elagyeeikrevky..gnsriDfllekeeeekcyvEVKsvtleeggialfPdapteRgqkhleeLaelvkegyravvlfvvqr 97 
                 ++n+lv+eal+++ i  l+gye +++evky  ++sriDfll+ +++++cy+EVKsvtl ++g ++fPda+t Rgqkhl+eL ++++eg+rav+lf v +
  EHU02384.1  84 RANQLVKEALSENQIlPLSGYEACRAEVKYgsEKSRIDFLLTAQDRPECYIEVKSVTLLQEGKGYFPDAVTIRGQKHLRELSQAAAEGHRAVLLFAVLH 182
                 68**********777799******************************************99************************************* PP

                 SS--EEEE-TTT-HHHHHHHHHHHHHT-EEEEEEEEE-TT CS
        SfsA  98 edarefkpnkeidpefaealreaaeaGVevlaydckvtpe 137
                 +++++++p+++id ++ae l +a+  GVe+lay+++++ e
  EHU02384.1 183 SGIEDVSPARHIDAAYAEQLVQARLGGVEILAYRAELSSE 222
                 ***********************************99987 PP

>> SfsA_N  SfsA N-terminal OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   2.1e-24   1.3e-20       1      63 []      13      80 ..      13      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 2.1e-24
                EEEEETTEEEEEEE......EE----S--TTT--TT-EEEEE....ESSS-SEEEEEEEET.TEEEE- CS
      SfsA_N  1 lrRpnRFladveld.g...tvHvpntGrlkelllpGarvllsksdnpkrKtkytleaveke.gtwvgi 63
                + R++RFladv  + g   t+H++ntG+++++++pG +v++s+sd+ +rK+++++e++e++ g+w+++
  EHU02384.1 13 ITRYKRFLADVITPeGetlTIHCANTGAMTGCATPGDTVWYSTSDSLTRKYPHSWEMTETQqGHWICV 80
                78*********999546666**************************************998899**97 PP

>> DUF3883  Domain of unknown function (DUF3883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.5e-05      0.33      18      53 ..     107     144 ..      83     156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.5e-05
     DUF3883  18 vewvnedvedglgYDiesvdkedgeerfIEVKtta...k 53 
                 ++ ++++ +++   D++++  +d  e +IEVK+ +   +
  EHU02384.1 107 CRAEVKYGSEKSRIDFLLTA-QDRPECYIEVKSVTllqE 144
                 56677777899999*****9.7888********886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1665.78
//
Query:       EHU02385.1  [L=175]
Description: 2'-5' RNA ligase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-22   79.8   2.7    1.8e-13   50.5   0.1    2.7  2  LigT_PEase       LigT like Phosphoesterase
    5.2e-13   49.2   0.8    5.8e-13   49.0   0.8    1.1  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.1     2e-17   1.8e-13       1      87 []      10      88 ..      10      88 .. 0.96
   2 !   28.4   0.5   1.6e-10   1.4e-06       7      87 .]      94     165 ..      89     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2e-17
                EE-CHHHHHHHHHHHHHHHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEECCSCCEEE CS
  LigT_PEase  1 lgppeeiaeelarlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfpsrlrprviy 87
                ++ppe+++++l +++a+     ++  ++p  + n+H+TLaflg+v++e+ ++l   +++i  ++++f++++d +g +p   rp+v++
  EHU02385.1 10 IAPPEDLQQQLVQWRADTF---SEEAGRPIAAANLHLTLAFLGKVSAETSKQLQTLASRI--HQPAFDVTLDDAGHWP---RPGVVW 88
                678****************...89999**************************9999999..999*************...*****9 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 1.6e-10
                 HHHHHHHHHHHHHHHHCCTTEEET.SGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEECC.SCCEEE CS
  LigT_PEase   7 iaeelarlaaeleralaklglkpv.rpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfpsrl.rprviy 87 
                 +++ l +la+ l++++a+ g+ +  +pf+pHiTL +     + ++p      +          +++++++lf+s+  ++r+ y
  EHU02385.1  94 PPRGLLQLASLLRAQAARHGCEQPaQPFHPHITLLRSATQ-PVALPPRGFLWR----------FTASQFSLFASEYvKGRTRY 165
                 4689*********************************764.455554433343..........99999999999998888776 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.8   6.5e-17   5.8e-13       1     122 [.      12     136 ..      12     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 6.5e-17
  2_5_RNA_ligase2   1 pppslaapiealr....rslydkayprwppHitLlypfvededladlaellsrlaketep..fevrldgfgvFehkksvvylsv.sdsealqal 87 
                      pp++l++++ ++r    +++   ++++  +H+tL+++++ +    ++ ++l++la+++ +  f+v+ld +g+ + + +vv+l   ++   l +l
       EHU02385.1  12 PPEDLQQQLVQWRadtfSEEAGRPIAAANLHLTLAFLGKVSA---ETSKQLQTLASRIHQpaFDVTLDDAGHWP-RPGVVWLGCqRPPRGLLQL 101
                      8999999******9877777777799999*********9996...57777777777554445***********7.577******9********* PP

  2_5_RNA_ligase2  88 raallealpeagdkedsgeftPHlTiaqsadstsa 122
                       + l+++ + +g  +  ++f+PH+T+ +sa++  a
       EHU02385.1 102 ASLLRAQAARHGCEQPAQPFHPHITLLRSATQPVA 136
                      ***********999999***********9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1382.16
//
Query:       EHU02386.1  [L=818]
Description: putative ATP-dependent helicase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-54  181.8   0.7    1.4e-53  180.8   0.7    1.6  1  HrpB_C      ATP-dependent helicase C-terminal
    1.4e-10   41.5   0.0    2.5e-10   40.7   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain
    1.4e-10   41.2   0.0    2.8e-10   40.3   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
    1.4e-07   31.7   0.0    3.5e-07   30.5   0.0    1.7  1  HA2         Helicase associated domain (HA2)
     0.0029   17.9   0.5      0.011   16.0   0.1    2.2  2  AAA_22      AAA domain
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.098   13.0   0.0    2.1  2  AAA_19      AAA domain
      0.036   13.8   0.3        0.3   10.8   0.0    2.6  4  AAA_30      AAA domain
      0.059   12.4   0.0       0.13   11.3   0.0    1.5  1  T2SSE       Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> HrpB_C  ATP-dependent helicase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.7   6.3e-57   1.4e-53       1     133 []     666     798 ..     666     798 .. 1.00

  Alignments for each domain:
  == domain 1  score: 180.8 bits;  conditional E-value: 6.3e-57
      HrpB_C   1 WlapllegvkslkelkkldlaealkallsweqqqeldelaPerlevpsgsriridYeeeeepvlsvrlqelfglketpkvaegrvpvlleLlsPaqrpl 99 
                 Wl+p ++ v++lk+l++++l +al +ll+w+q+q+ld+ +P++++vp+gsr +i+Y++++ p+l+vr+qe+fg +++p+vaegrvp++leLlsPaqrpl
  EHU02386.1 666 WLQPQMSAVRDLKSLQSVNLVTALLHLLTWSQRQRLDTVLPTHYTVPTGSRLPIRYDADKPPALAVRIQEMFGEASNPAVAEGRVPLVLELLSPAQRPL 764
                 *************************************************************************************************** PP

      HrpB_C 100 qvtkdLasFwkgsYaevrkelrgrYpkHpWPedP 133
                 q+t+dLa Fw+g+Y++v+ke++grYpkH+WP+dP
  EHU02386.1 765 QITRDLAAFWRGAYKDVQKEMKGRYPKHTWPDDP 798
                 *********************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.1e-13   2.5e-10       8     110 ..     206     327 ..     199     328 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-13
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH..... CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv..... 97 
                 +l  l++e g  l+f++ + ++ +  + l e++   ++  ++l+g lp   +++++     g+++v++at++ae++++i++++lV++    r       
  EHU02386.1 206 QL--LRQESGSLLLFLPGVAEIARvKREL-ETRvdeDVDLTPLYGALPLAAQQQAILPAAPGRRKVVLATNIAETSLTIEGIRLVVDSAQERRAlfdar 301
                 44..489999**********886633444.4445779**********************9**************************9888866556667 PP

                 .............HHHHHHHTTSSST CS
  Helicase_C  98 .............tsyiqriGRtgRa 110
                              +s+ qr+GR+gR 
  EHU02386.1 302 sgvtrlqtqrisqASMTQRAGRAGRL 327
                 7779999999999************5 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.2e-13   2.8e-10      12     171 ..      14     162 ..       7     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.2e-13
                 H....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT..CSEEEEE CS
                 x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
        DEAD  12 l....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng..vdivvgt 104
                 l    +  +vl+aa+TG+GK++   + +lq+          +++++eP r  a++++++l +++ +   +  +++g   + ++ s    g  +++ v t
  EHU02386.1  14 LsaldQASNVLLAAPTGAGKSTWLPLQLLQHK-----ALSGRIIMLEPRRLAARNVAQRLAELLGE---QPGATVGYRMRGENCS----GpmTRLEVVT 100
                 43334678***************999999765.....45669**********************96...3444555444433333....334778899* PP

                 HHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 105 pgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                  g l ++l++    l+ v++++lDE ++ + q   d   ++l  ++q   d   + +++++SATl  +
  EHU02386.1 101 EGILTRMLQQDP-MLDGVSLVILDEFHERSLQ--ADLALALLLDVQQGLRD---DLKILLMSATLDnT 162
                 ********7555.7**************9998..56666666666444443...334********844 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-10   3.5e-07       1      59 [.     389     446 ..     389     477 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.6e-10
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAals 59 
                 A ++L +lgALde+g+l + Gr+ma+l  + rl+ +L aa  ++ + +  ++ +vA+l+
  EHU02386.1 389 AQQQLMRLGALDESGRLNTQGRRMAQLGSDARLSAILCAA-GRDADAVASAALLVAVLE 446
                 7899*********************************999.55599**********998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   5.1e-06     0.011       4     127 ..      19     154 ..      16     160 .. 0.71
   2 ?   -2.8   0.0       3.2   7.3e+03      97     117 ..     654     682 ..     652     694 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.1e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.............erlsseellealeqalrar 89 
                 +a+ +++ +++G+GK+t l   l q+++       + +++  ++  +   ++++++l++ lg++  a             +  ++e + e +   + ++
  EHU02386.1  19 QASNVLLAAPTGAGKSTWLPLQLLQHKAL------SGRIIMLEPRRL-AARNVAQRLAELLGEQPGAtvgyrmrgencsgPMTRLEVVTEGILTRMLQQ 110
                 6788999**********999888888543......445455555555.5**************9999*******9999985555555553333333333 PP

      AAA_22  90 av....ielliiDEaqhlrseealeeLrsllnl...srkgvqliL 127
                 +     ++l+i+DE++   s +a   L  ll++    r++++++L
  EHU02386.1 111 DPmldgVSLVILDEFHER-SLQADLALALLLDVqqgLRDDLKILL 154
                 3346667*********97.64444444445554444666777666 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
      AAA_22  97 iDEaqhlr...s.....eealeeLrslln 117
                 +DEa  l+   +     + a+++L+sl+ 
  EHU02386.1 654 VDEASLLDsldRwlqpqMSAVRDLKSLQS 682
                 67877777554144344777777777765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.4e-05     0.098       9     115 ..      19     129 ..      15     152 .. 0.68
   2 ?   -2.0   0.0       1.8     4e+03      95     117 ..     641     663 ..     562     672 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..atTiHrlal...........ldfddlltealelle.. 92 
                 +++++l+ a+ G GK++ l   +   ++l      +i+++ + + Aa+++++rla+l++e    T+ +  +           l             e  
  EHU02386.1  19 QASNVLLAAPTGAGKSTWLPLQLLQHKALS----GRIIMLEPRRLAARNVAQRLAELLGEqpGATVGYR-MrgencsgpmtrL-------------Evv 99 
                 568899*************98776666666....68******************999888775555433.2233444332221.............222 PP

      AAA_19  93 ......eaeeekklqeee.llivDEfqdvd 115
                       +  +++++ ++  l+i DEf + +
  EHU02386.1 100 tegiltRMLQQDPMLDGVsLVILDEFHERS 129
                 2333333344455558888999***98754 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
      AAA_19  95 eeekklqeeellivDEfqdvdel 117
                    + l ee++  vDE++ +d l
  EHU02386.1 641 CAAQWLPEENWPAVDEASLLDSL 663
                 34456656668899999988865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014       0.3      20      97 ..      22     125 ..      13     154 .. 0.66
   2 ?   -3.1   0.0       2.5   5.6e+03     149     173 ..     188     212 ..     184     217 .. 0.80
   3 ?   -3.0   0.0       2.2     5e+03      91     114 ..     396     421 ..     345     474 .. 0.61
   4 ?   -1.8   0.0      0.96   2.1e+03      84     102 ..     643     662 ..     605     665 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg..i...eastiakllkrlk.....................grarlepg.tl 91 
                  ++l +p G+GK+t l      ++a  gr+i+l p   aA+++a+ l   +   +++t+   ++  +                     +   + +g +l
  EHU02386.1  22 NVLLAAPTGAGKSTWLPLQLLQHKALSGRIIMLEPRRLAARNVAQRLAelLgeqPGATVGYRMRGENcsgpmtrlevvtegiltrmlqQ-DPMLDGvSL 119
                 578999**********999999999999********99999998644322022233333222222113333333336666666666642.333333377 PP

      AAA_30  92 livDEa 97 
                 +i DE 
  EHU02386.1 120 VILDEF 125
                 777775 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
      AAA_30 149 aeLtevvRqkeseeraaalalregd 173
                 a L+   R++e+  r++a+ lr+  
  EHU02386.1 188 APLSPSLRFDEAVAREVAQLLRQES 212
                 5678889999999999999999765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.2
      AAA_30  91 llivDEagmvdtk..qlaallkaaek 114
                 l   DE+g ++t+   +a+l + a+ 
  EHU02386.1 396 LGALDESGRLNTQgrRMAQLGSDARL 421
                 44456666665431134444444433 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.96
      AAA_30  84 arlepg.tllivDEagmvdt 102
                 a++ p+ +   vDEa+++d+
  EHU02386.1 643 AQWLPEeNWPAVDEASLLDS 662
                 44555547778999999986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.9e-05      0.13     119     164 ..      14      55 ..       6      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
       T2SSE 119 aevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvE 164
                  ++l     +  ++l++ +Tg GK+t l   l + ++ + ri+++E
  EHU02386.1  14 LSAL----DQASNVLLAAPTGAGKSTWLPLQLLQHKALSGRIIMLE 55 
                 4444....5559****************999999888899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5549.95
//
Query:       EHU02387.1  [L=845]
Description: penicillin-binding protein 1B (PBP1B) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-55  188.0   0.0      2e-55  187.0   0.0    1.4  1  Transgly        Transglycosylase
    8.7e-28   96.2   0.0    2.9e-27   94.5   0.0    1.9  1  UB2H            Bifunctional transglycosylase second domain
    1.1e-26   93.0   1.1    1.1e-26   93.0   1.1    2.2  2  PBP1_TM         Transmembrane domain of transglycosylase PBP1
    1.1e-25   90.5   0.1    1.1e-25   90.5   0.1    2.4  2  Transpeptidase  Penicillin binding protein transpeptidase dom
    2.4e-08   34.0   0.0    5.9e-08   32.8   0.0    1.7  1  UvrB_inter      UvrB interaction domain
  ------ inclusion threshold ------
      0.031   15.4   7.2       0.16   13.1   4.7    3.0  3  DUF3484         Membrane-attachment and polymerisation-promot
       0.46   10.4  13.4       0.79    9.6  13.4    1.3  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        2.5    7.9   9.5        7.1    6.5   9.5    1.7  1  DivIC           Septum formation initiator
        9.4    5.8  23.4         15    5.1  23.4    1.2  1  Spt20           Spt20 family


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   0.0     1e-58     2e-55      10     177 ..     211     382 ..     202     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: 187.0 bits;  conditional E-value: 1e-58
    Transgly  10 eeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeIL 108
                 + e+r +v+ + +p+ l+++++a+EDr+Fyeh+G+++ +i rA+l+n+++gk  qGgST+tqQlvknlfl++er+l+rK++ea++A+ +++++sKd+IL
  EHU02387.1 211 NGEQRLFVPRAGFPDLLVDTLIATEDRHFYEHDGISPYSIGRAFLANITAGKAVQGGSTLTQQLVKNLFLTNERSLWRKAREAYMAVIMDARYSKDRIL 309
                 57899999999**************************************************************************************** PP

    Transgly 109 eaYlNsvylgr....evyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 e+YlN+vylg+    ++ G+  A+ +yFg+++++L+l++ a+L+g++k  s ynp++np+ a +rr++vl+ +
  EHU02387.1 310 ELYLNEVYLGQagndQIRGFPLASLYYFGRPVDELSLDQQAMLVGMVKGASLYNPWRNPKLALERRNLVLRLL 382
                 **********9999*******************************************************9865 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   1.5e-30   2.9e-27       1      85 []     115     199 ..     115     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 1.5e-30
        UB2H   1 LypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriellrRgFdfpdgaeparrvrlrfagnrvasiqdldngrdlalvRL 85 
                 L+pG+a+++ +++++Le ++Yr+vs++trpGe++v+gn+iellrR+Fdfpd++e + ++r++f+++++++i+++++grd++++RL
  EHU02387.1 115 LEPGMAYNKSEMIALLEGTQYREVSRITRPGEFSVKGNTIELLRRPFDFPDSKEGQIHARMTFSKDELSEIKNVETGRDFGFFRL 199
                 89**********************************************************************************8 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   1.1   5.4e-30   1.1e-26       1      85 []       1      81 [.       1      81 [. 0.90
   2 ?   -0.3   1.4      0.71   1.4e+03      21      48 ..     803     830 ..     795     837 .. 0.42

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 5.4e-30
     PBP1_TM  1 msgdDRePiGRkGkkakakparkkasrrrrrdddyddeyddeedDdd.dddeeeevprk..gkkkkpprkkrrwlwlliklflvlvvl 85
                msg+DRePiGRkGk+    p+r+ a+r rrrd d d      +dD+d d++ee +vprk  gk++kppr krrwl+++iklflv+vv+
  EHU02387.1  1 MSGNDREPIGRKGKPL---PPRNSARRGRRRDIDSDV----AQDDFDdDYEEEAPVPRKgkGKGGKPPRGKRRWLGWFIKLFLVFVVV 81
                9**************7...9***********999777....4555553789999****9778899*********************97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.71
     PBP1_TM  21 arkkasrrrrrdddyddeyddeedDddd 48 
                 + ++ +++++ +d+ +++ +++++ +++
  EHU02387.1 803 QVQQMQQQQQMQDQQQQQLQQQQQQEQK 830
                 2233333333344444433333333322 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1   5.4e-29   1.1e-25       2     284 ..     475     723 ..     474     748 .. 0.84
   2 ?   -1.0   3.3       0.4   7.9e+02     193     237 ..     792     835 ..     787     845 .] 0.71

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 5.4e-29
                     EEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHT.TSSTTSEEEEETCCEETTSS...ECTCCCC-SSSS CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaalea.gvikpdetlddsggkiqggqs..ikdweqdnkgse 93 
                     a+vv+d  tgev am++  +    +++g     +nra+q + + GS  K++t ++al + ++++ ++ + d+++  +++    +k ++ d++ s+
      EHU02387.1 475 AMVVVDRFTGEVRAMVGGADP---QFAG-----YNRALQARRSIGSLAKPATYLTALSQpNTYRLNSWIADEPIALKQPNGsiWKPMNDDRRFSG 561
                     789***************864...3444.....8*******************99996559************9876544447*******99999 PP

                     EEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BSE CS
  Transpeptidase  94 gitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiGltvtplqlaqayaaiangGklvkPhlv 188
                     ++ l +al++S n+ +v+l   lg + + ++  k+g+ +         +   p ++ l ga       l++tp+++aqa++ ia+gG+  +++ v
      EHU02387.1 562 KVMLVDALTNSMNVPTVNLGMTLGLNAVVDTWTKLGVPK--------DQLN-PVPAMLLGA-------LNLTPVEVAQAFQSIASGGNHAELSAV 640
                     *********************************999988........4444.667788889.......*************************** PP

                     EEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG.TCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEE CS
  Transpeptidase 189 kaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtata.avegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkyava 282
                      ++ ++dg+   ++ ++ +++  +++a  +  ++++vv rg+++a + + ++ ++agKTGT++   +           swf+g+  +   ++a++
      EHU02387.1 641 RSVIAEDGTVLYQSFPQAQRVEPAQAAYLTLYTMQQVVDRGTARALGaRFPNAHLAGKTGTTNDLVD-----------SWFAGIDGK---EVAIT 721
                     ********88888889999999999999999**********8888889**************99873...........388888754...44444 PP

                     EE CS
  Transpeptidase 283 vl 284
                      +
      EHU02387.1 722 WV 723
                     43 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.4
                     ECTT....EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTC CS
  Transpeptidase 193 dpdg....vrkvkpkelnklpisketaekvkeglkgvvsrgsgtataav 237
                     dp++    ++++ ++ ++++ +++++++++++  ++++++ +g     v
      EHU02387.1 792 DPNAlcqqQQQQVQQMQQQQQMQDQQQQQLQQQQQQEQKDSNG-----V 835
                     6777666455555667788889999999999988888888844.....3 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0     3e-11   5.9e-08       2      71 ..     114     190 ..     113     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3e-11
  UvrB_inter   2 elkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtvei......fpasaeev.airieffgdeiesireidp 71 
                 +l+ g++++++e+++ L+  qY+  ++ +++G+F+v+G+t+e+      fp s+e +   r++f++de+ +i+ ++ 
  EHU02387.1 114 SLEPGMAYNKSEMIALLEGTQYREVSRITRPGEFSVKGNTIELlrrpfdFPDSKEGQiHARMTFSKDELSEIKNVET 190
                 799****************************************99999999886555489************99875 PP

>> DUF3484  Membrane-attachment and polymerisation-promoting switch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.6   3.2e+03       5      21 ..     260     276 ..     257     297 .. 0.79
   2 ?   -0.3   0.0       1.2   2.4e+03      38      61 ..     412     435 ..     382     438 .. 0.67
   3 ?   13.1   4.7   7.9e-05      0.16      16      63 ..     800     844 ..     778     845 .] 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.6
     DUF3484   5 aqaAvsGeetlrrqPvd 21 
                 a +Av+G  tl++q v+
  EHU02387.1 260 AGKAVQGGSTLTQQLVK 276
                 678**********9988 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
     DUF3484  38 Pvp.skeqeekepkkekltdrvkgl 61 
                 P+p   +   +e  + kl+d+vk+l
  EHU02387.1 412 PQPaFMQMVRNE-LQAKLGDKVKDL 435
                 444323334445.34499*****97 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 7.9e-05
     DUF3484  16 rrqPvdpqvqenpqvqeqaqeqPvpskeqeekep.kkekltdrvkglFg 63 
                 ++q v+ q+q+++q+q+q q+q +   +q+++e+  ++++   +k++Fg
  EHU02387.1 800 QQQQVQ-QMQQQQQMQDQQQQQLQ---QQQQQEQkDSNGVAGWIKDMFG 844
                 344555.45567777777777776...334444434458*********9 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  13.4    0.0004      0.79     188     223 ..     796     829 ..     756     839 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0004
       TFIIA 188 laepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesq 223
                 l ++qqq+   qq qqqqq+q qqqq+ qqqq+++q
  EHU02387.1 796 LCQQQQQQV--QQMQQQQQMQDQQQQQLQQQQQQEQ 829
                 333333311..1112222222222222211111111 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.5    0.0036       7.1      20      51 ..     798     829 ..     786     841 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 +q++q++++ q++ + + +++++L+++ ++ +
  EHU02387.1 798 QQQQQQVQQMQQQQQMQDQQQQQLQQQQQQEQ 829
                 56667777777777777777777776665544 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  23.4    0.0076        15     107     142 ..     799     832 ..     781     837 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0076
       Spt20 107 qkqsqqnqqqqqqqqqqqqqqqqqqeqqqqqnekds 142
                 q+q+  + qq qqqqq q qqqqq +qqqqq++kds
  EHU02387.1 799 QQQQ--QVQQMQQQQQMQDQQQQQLQQQQQQEQKDS 832
                 2222..222222222223333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3442  (0.191979); expected 358.6 (0.02)
Passed bias filter:                     1738  (0.0969379); expected 358.6 (0.02)
Passed Vit filter:                       277  (0.0154498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.48
# Mc/sec: 5347.70
//
Query:       EHU02388.1  [L=733]
Description: ferrichrome outer membrane transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-59  202.7  33.9      2e-59  202.7  33.9    1.9  2  TonB_dep_Rec  TonB dependent receptor
    3.8e-23   82.1   0.1    1.1e-22   80.6   0.1    1.9  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   5.0      0.81   7.3e+03     122     160 ..     203     242 ..      94     269 .. 0.37
   2 !  202.7  33.9   2.2e-63     2e-59       3     470 .]     255     732 ..     251     732 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.81
                   EEEEE.....EE..EEEEEEEEEEEEEEEECCBEESCCTCCSEEEE CS
  TonB_dep_Rec 122 ngdlw.....fG..snladgldyrklsddgydaydplnpsgdasds 160
                   n++l+     fG  +  a  ++yr      ++  ++++++ +a+++
    EHU02388.1 203 NHNLYstgfdFGgaIDDAGVYSYRL-----TGLASSQDAQ-QANNK 242
                   2221121111221111111222221.....1111111111.11111 PP

  == domain 2  score: 202.7 bits;  conditional E-value: 2.2e-63
                   CCTSSTTSXEEEEEEEEEEEEEETTTTEEEEEEE...........EEEEEEEEEECCC..EECCCEEECECCEEEEEEEEEEEEEEEEEEEEEE..E CS
  TonB_dep_Rec   3 qrsggalsddnllanngdylrytdggdlgsalsr...........gylgtnplyygdn..ysetdnkrlrlgydydlddnlswklslraglnYs..s 84 
                   +     ++++++l+  + +++  d+g++g+ ++            + +  ++ +++ +   ++ ++++ ++gy +++ ++ +w  ++r++l+Y+  +
    EHU02388.1 255 R-----PDENTRLDLLTYFQNEPDTGYYGWLPREgtvvpitrpdgSQYKLPT-SFDEGekSNRISRNTKMVGYSFEHRFDETW--TVRQNLRYAelT 343
                   5.....6667777777777777777777766666777776556653333333.33333345556688888888888888888*..*********444 PP

                   EEEEEEEEEEEEEE....EEEEEEEE...CEEEEEEEEEEEEEE...EEEEEEEEEEEEEEEEEEEEE.........EECCBEESCCTC........ CS
  TonB_dep_Rec  85 tdgdsdynnsglgg....grsynrdn...dyyglgnvlaaeldl...ngdlwfGsnladgldyrklsd.........dgydaydplnps........ 154
                   td +s y n+++++    +r y +++   + ++++n+ +a++ +   +++l++G      +dy+++++         ++                  
    EHU02388.1 344 TDYRSIYGNGFNAAtqeiTRGYATSDeklNEFAVDNQAQAKFATgqlDHTLLLG------VDYQRMRNdinaafgsaFP---------Lnavapqyg 425
                   444444444444447777555555555555555777777777666669999999......****977735555555544.........444444455 PP

                   .........CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS....EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCT CS
  TonB_dep_Rec 155 .........gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlrag.afsrsgsafsPsvglryrptddlslrasysrgfraPslge 241
                            ++++ + +++++glyaqd++ + dr+ ltlG Ryd+  +++ +++++   ++++ af+++ g++y + ++++ ++sys++f  P+ g 
    EHU02388.1 426 ndslngtpfPYRYLN-KQEQTGLYAQDQMAW-DRWVLTLGSRYDYAMTSAINRDTNtEVKNHDQAFTWRGGVNYVFDNGIAPYFSYSESFI-PTAGT 519
                   599999985555555.999999*********.*****************99999999899999****************************.***** PP

                   TCEEEECCCCCEEEECSTT---EEEEEEEEEEEEEE..TTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEE..EEEEEEEEEEEEEEEEETT CS
  TonB_dep_Rec 242 lyaggsngaggalsngnpdLkPEtsknyelGlkldd..drlnltlayFridiknfittdpdgpslgglgdfqyqNv..gkarikGvElelsyrltpg 334
                   + +            g p ++P ++k+ye G+k+ +  +   +t+a +  + +  +t+dpd          + + +  g+ r++GvEle+++     
    EHU02388.1 520 TVS------------GQP-FDPSRAKQYETGVKYVPkdRPVVVTAAIYELTKSKNLTADPD---------HTLFSIqsGEIRSRGVELEAKAA---- 590
                   ***............443.**************766656666*******************.........77777777************999.... PP

                   EE..EEEEEEEEEEEEECECEEECTTTTSSTTEESEEEEEEEEEEC...SEEEEEEEESEEEEEEECCSSEEEE...ECECCEEEE--EEEEEEEEE CS
  TonB_dep_Rec 335 Wg..lglsgggytYydagddsdaddggnplpnvPkhtanlgltYkf...paggWgaglllagarYvavggrryg...daantfrrvpgYtlldlslg 423
                   ++  ++l+++ ytY+da++++d++ +g++  +vPkh+a+l+ +Y+f    ++g +   l+ag+rYv+  +  y+   d +++f  v+gYt++d+ l 
    EHU02388.1 591 LNanVNLTAS-YTYTDAEYTEDTQLKGKTPVQVPKHMASLWSDYTFhetALSGVT---LGAGVRYVGETQGLYSagpDVNQNF-TVAGYTTVDAALK 682
                   5555777888.******************************99944234444433...24799**654444444333666777.************* PP

                   EEES....SSEEEEEEEESTTETCSCEEESTTTTTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 424 Yklp....knltlslgvnNLfdkryyassgyyglggypgpgRtfrlglryk 470
                   Y+l     ++ t+ ++vnNLf++ y as++   +++y+g+ R++  +++++
    EHU02388.1 683 YDLGrfglPGSTVGVNVNNLFNRDYVASCYRE-YACYWGAERQIVGTATFR 732
                   *9987666555***********9999999999.***********9999986 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   1.3e-26   1.1e-22       3     108 .]      79     181 ..      77     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.3e-26
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTS CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyG 101
                 ++ p+svsvvt+e++e++ +ts+++a++++pgv + ++g++g  + +siRG+++++++ ++DG+ +   ++++ +   idp  +er e+l+Gp s+lyG
  EHU02388.1  79 EKNPQSVSVVTREEMEMRSVTSVKQAFNYTPGVLTGNRGSSGVYDALSIRGFSETNTNQYLDGLKL---QGDNYSEFAIDPYFLERAELLRGPVSVLYG 174
                 6789******************************99999999999********************9...467777789********************* PP

                 STGSSEE CS
        Plug 102 sdaigGv 108
                  +++gGv
  EHU02388.1 175 KSNPGGV 181
                 ******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5186.38
//
Query:       EHU02389.1  [L=264]
Description: ferrichrome transport ATP-binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-32  112.3   0.0    3.1e-32  111.9   0.0    1.1  1  ABC_tran     ABC transporter
    6.2e-09   35.6   0.0    4.5e-07   29.5   0.0    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    4.4e-06   26.7   0.0    0.00069   19.5   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00011   22.7   0.1    0.00016   22.1   0.1    1.4  1  AAA_16       AAA ATPase domain
    0.00012   21.7   0.1    0.00025   20.7   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00053   19.8   0.0    0.00073   19.3   0.0    1.1  1  AAA_15       AAA ATPase domain
    0.00098   19.4   0.1     0.0028   17.9   0.1    1.8  1  AAA_22       AAA domain
     0.0015   19.1   0.1     0.0024   18.4   0.1    1.2  1  AAA_23       AAA domain
     0.0022   16.9   0.4       0.67    8.7   0.1    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0033   17.2   0.4     0.0046   16.7   0.4    1.5  1  AAA_30       AAA domain
      0.006   16.7   0.1       0.01   16.0   0.1    1.6  1  AAA_33       AAA domain
     0.0072   16.2   0.0      0.013   15.4   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0087   15.7   0.0      0.016   14.8   0.0    1.4  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
       0.02   14.5   1.8      0.038   13.6   1.3    1.9  1  AAA_25       AAA domain
      0.085   12.8   0.0       0.21   11.5   0.0    1.7  1  NACHT        NACHT domain
      0.093   13.3   0.0        0.2   12.2   0.0    1.5  1  AAA_18       AAA domain
      0.099   11.5   0.0       0.15   11.0   0.0    1.2  1  AAA_10       AAA-like domain
        0.1   12.0   0.0        2.5    7.5   0.0    2.1  2  TniB         Bacterial TniB protein
       0.12   12.6   0.1       0.19   12.0   0.1    1.6  1  AAA_28       AAA domain
       0.16   12.0   0.0       0.63   10.1   0.0    1.8  2  AAA_14       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   3.5e-35   3.1e-32       1     137 []      26     175 ..      26     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 3.5e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l+ vsl + +g+++a++G+nG+GKStLlk+l +++   eG++ll+++++++ + + + +e+++lpq+    +++tvre                  +++
  EHU02389.1  26 LHPVSLAFTPGKVTALIGHNGSGKSTLLKMLGRHHAASEGRVLLNEQPVDRWSSKAFAREVAYLPQQLPAAEGMTVRELvaigrypwhgalgrftqDDR 124
                 6789******************************************************************************************97777 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 e++++a++++gl+ ++ + v     sLSgG++qr  la++++++++ lllDEpt+
  EHU02389.1 125 ERVAQAIARVGLTPFASRLV----DSLSGGERQRAWLAMMVAQNSRCLLLDEPTS 175
                 78******************....*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     5e-10   4.5e-07      20     205 ..      31     211 ..      23     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 5e-10
                 EETTS.SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEE....EETTEESSSSSSCEEEEEEEETTSEEEEEE CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  20 lpfsk.sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitf....dnedkklkiekeevsisrrvkrkgeseyki 113
                 l f++ ++ta++G+NGSGKs ll  +    G ++a    +++ + l++++   + ++ka    +     + + ++  + +e v i r   ++   +++ 
  EHU02389.1  31 LAFTPgKVTALIGHNGSGKSTLLKML----GRHHA----ASEGRVLLNEQPVDRWSSKAFAREVAylpqQLPAAEGMTVRELVAIGRYPWHGALGRFTQ 121
                 55655269*************99865....96666....778888888843444444443333221232333344556666688888888887788888 PP

                 TTEEE-HHHHHH..HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 114 ngkevtkkevse..llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 +++e   + +++  l + a    ++LSgGe++ + la+++A +    ++  llDe  +aLD ++   v  l+++ s++  + vi++ +++   a
  EHU02389.1 122 DDRERVAQAIARvgLTPFASRLVDSLSGGERQRAWLAMMVAQN---SRC-LLLDEPTSALDIAHQVDVLALVQTLSHEHGLTVITVLHDINMAA 211
                 8777766666652234445555679**************8854...345.589***********************999999999877665555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.7e-07   0.00069       1      22 [.      38      59 ..      38      86 .. 0.82
   2 ?    5.3   0.0     0.016        14     235     272 ..     145     179 ..     127     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.7e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +++liG NgsGKS+LL+ l   
  EHU02389.1 38 VTALIGHNGSGKSTLLKMLGRH 59
                69***************99655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.016
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHP 272
                 ++lS G ++  a l+++ ++++  + ll+DEp + L+ 
  EHU02389.1 145 DSLSGGERQR-AWLAMMVAQNS--RCLLLDEPTSALDI 179
                 5679999999.99999999998..9**********986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   1.8e-07   0.00016      24     107 ..      35     115 ..      23     202 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.8e-07
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala......a 107
                 p  ++ l+G+ G+GKs+l+++l r+  +++g + l+++ ++         + + +++ + ++ l +++ +ae    re  + a++      a
  EHU02389.1  35 PgKVTALIGHNGSGKSTLLKMLGRHHAASEGRVlLNEQPVDR--------WSSKAFA-REVAYLPQQLPAAEGMTVRE--LVAIGrypwhgA 115
                 257899*****************9999997666588888888........6666644.66666666644433222222..333334455553 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   2.7e-07   0.00025      16      39 ..      30      53 ..      24      56 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.7e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                ++ +++  +t l+G++GsGKSTll
  EHU02389.1 30 SLAFTPGKVTALIGHNGSGKSTLL 53
                567777779**************8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.2e-07   0.00073      24      43 ..      36      56 ..      23      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.2e-07
      AAA_15 24 e.ltvliGkNnsGKSsileal 43
                  +t liG+N+sGKS++l++l
  EHU02389.1 36 GkVTALIGHNGSGKSTLLKML 56
                459****************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.2e-06    0.0028       6      62 ..      37      88 ..      34     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.2e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellr 62
                ++++++G+ G+GK+tll++l + + +       + +v++ + p++  ssk ++re++ 
  EHU02389.1 37 KVTALIGHNGSGKSTLLKMLGRHHAAS------EGRVLLNEQPVDRwSSKAFAREVAY 88
                6899******************98543......6666666666666788888777765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.7e-06    0.0024      15      37 ..      31      54 ..      23      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.7e-06
      AAA_23 15 idFsk.gltlItGpNGaGKTTild 37
                + F + ++t+++G+NG+GK+T+l 
  EHU02389.1 31 LAFTPgKVTALIGHNGSGKSTLLK 54
                56766479**************97 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00075      0.67     243     277 ..      35      66 ..      24      73 .. 0.82
   2 !    6.5   0.0    0.0035       3.2     324     357 ..     148     181 ..     140     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00075
                 -SSEEEEEE-TTSSHHHHHHHHHHCCSEE-TTSS- CS
  ABC_ATPase 243 pkGvtlIvGggfhGKsTLLeAlekGvynhvpgDGR 277
                 p +vt+++G +  GKsTLL+ l +    h++  GR
  EHU02389.1  35 PGKVTALIGHNGSGKSTLLKMLGR---HHAASEGR 66 
                 556*****************9865...46666666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0035
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmi 357
                 SG   q a+++ ++  +++ lL+DE tsA  + +
  EHU02389.1 148 SGGERQRAWLAMMVAQNSRCLLLDEPTSALDIAH 181
                 999999***********************87655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   5.1e-06    0.0046      16      50 ..      34      68 ..      28     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.1e-06
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                ++ +v++l G  G+GK+t+lk l ++++a++grv+
  EHU02389.1 34 TPGKVTALIGHNGSGKSTLLKMLGRHHAASEGRVL 68
                45569******************888888865554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.2e-05      0.01       1      31 [.      38      72 ..      38     185 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklg....avllssd 31
                ++ l+G++GsGKstl++ l ++++     vll++ 
  EHU02389.1 38 VTALIGHNGSGKSTLLKMLGRHHAasegRVLLNEQ 72
                5679************9886555544557777764 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.013      99     125 ..      36      62 ..      23      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                  TSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelel 125
                  +k+++l+G+ G GKStL+++l  ++ +
   EHU02389.1  36 GKVTALIGHNGSGKSTLLKMLGRHHAA 62 
                  699****************99876555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.016       2      36 ..      38      72 ..      37      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS- CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglklavivNef 36
                vt l G  GsGK+tLl+ l +++a  +  v++Ne+
  EHU02389.1 38 VTALIGHNGSGKSTLLKMLGRHHAASEGRVLLNEQ 72
                78999****************************98 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   4.3e-05     0.038      32      65 ..      35      70 ..       9     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.3e-05
      AAA_25 32 agelallaGapgtGKttlaldlalava..tGkpwlg 65
                 g++++l+G+ g+GK+tl+  l+ + a  +G+ +l 
  EHU02389.1 35 PGKVTALIGHNGSGKSTLLKMLGRHHAasEGRVLLN 70
                599******************999999555554443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.21       2      22 ..      38      58 ..      37      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
                CEEEEC-TTTCHHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqklal 22
                + +l G +GsGK+tLl+ l +
  EHU02389.1 38 VTALIGHNGSGKSTLLKMLGR 58
                6789************98865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00022       0.2       3      44 ..      41      80 ..      40     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00022
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                l G  G+GK+tl k L +++      + v+ ++++++ +  +
  EHU02389.1 41 LIGHNGSGKSTLLKMLGRHH--AASEGRVLLNEQPVDRWSSK 80
                78999**************9..77777777777777777666 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.15      24      54 ..      39      69 ..      32     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
      AAA_10 24 sliiGdlGnGKSvlakllvlyisllggkali 54
                +++iG  G GKS l k+l    ++ +g++l+
  EHU02389.1 39 TALIGHNGSGKSTLLKMLGRHHAASEGRVLL 69
                699**********************999997 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.098        88      39      62 ..      40      63 ..      34      77 .. 0.84
   2 ?    7.5   0.0    0.0028       2.5     106     160 ..     151     203 ..     128     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.098
        TniB 39 llvGdsnnGKtmivekFarlhppe 62
                 l+G+   GK+++++   r+h ++
  EHU02389.1 40 ALIGHNGSGKSTLLKMLGRHHAAS 63
                799***********9998888765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0028
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 + +++ l+++ + + r L++DE  ++l     +q  +l+++++L+ e  +++++v
  EHU02389.1 151 ERQRAWLAMMVAQNSRCLLLDEPTSAL--DIAHQVDVLALVQTLSHEHGLTVITV 203
                 566778899999**************9..8999**************99999987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00021      0.19       3      41 ..      40      83 ..      38     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
      AAA_28  3 vitGgestGKTtlleaLaar.....gypvvpEaareileeklak 41
                +++G  ++GK+tll+ L ++     g + + E   + +++k++ 
  EHU02389.1 40 ALIGHNGSGKSTLLKMLGRHhaaseGRVLLNEQPVDRWSSKAFA 83
                799***************88777877777755544444444433 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00071      0.63       3      29 ..      37      62 ..      35      95 .. 0.82
   2 ?   -0.9   0.0       1.7   1.5e+03      58      78 ..     158     178 ..     143     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00071
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvk 29
                k+ ++ G   +GK+tllk l +++   
  EHU02389.1 37 KVTALIGHNGSGKSTLLKMLGRHHA-A 62
                7899****************99998.3 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
      AAA_14  58 eklkeekktylflDEiqevpe 78 
                 +++ +++ ++l+lDE   + +
  EHU02389.1 158 AMMVAQNSRCLLLDEPTSALD 178
                 4422347899****9776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1904.06
//
Query:       EHU02390.1  [L=292]
Description: ferrichrome-binding periplasmic protein precursor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-31  108.6   0.0    4.3e-31  108.3   0.0    1.0  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   2.4e-35   4.3e-31       1     234 [.      34     266 ..      34     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 2.4e-35
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTS... CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntg... 94 
                   +++l++ +te+llalG+ +  v++ +  + +  ++ l++ +v+vg ++e+++E + +++P l++ s+g+      +++l+ ++p + ++  n g   
    EHU02390.1  34 VIALEWLPTELLLALGVNPLGVADVHNYNVWVGQPPLPAGVVDVGLRTEPNLELMTQMHPSLILCSNGY---GPPKDKLRRIAPIMGFDLHN-Gdgk 126
                   799********************************9999******************************...*****************998.5589 PP

                   ..HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--.STT-EEE-HHH CS
  Peripla_BP_2  95 ..eslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaesk.kseyeeisaEq 188
                     +    ++ral+ +lg+e++ae++ +++d ++aaa+++++    +++l+++  d+++ + +g ns + +++  l+++n+ + +   ++++ i+ E+
    EHU02390.1 127 plSRARASLRALAARLGREAQAEAHLQQVDAEIAAARQRLAPHAGRAILLMSLLDSRHAITFGKNSLFLEVMALLNLKNAWQGETsFWGSAVIGLER 223
                   98888999***********************************9************************************6655559********** PP

                   HHH.H--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE CS
  Peripla_BP_2 189 ila.sdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyal 234
                   ++   d+++i +       n+++ ++l ++pl++++p v +g++ ++
    EHU02390.1 224 LAVfHDVEAICFEHD----NDAVMQQLSRSPLWQSMPFVHSGHFQRV 266
                   ************999....***********************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2383.33
//
Query:       EHU02391.1  [L=659]
Description: membrane component of an ABC superfamily iron-hydroxamate transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.4e-137  455.5  75.8    5.1e-69  232.7  35.2    2.0  2  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.9  32.7   3.9e-72   6.9e-68       4     310 ..      17     322 ..      12     324 .. 0.94
   2 !  232.7  35.2   2.8e-73   5.1e-69      37     312 .]     385     657 ..     358     657 .. 0.95

  Alignments for each domain:
  == domain 1  score: 228.9 bits;  conditional E-value: 3.9e-72
       FecCD   4 lllllslllgavkispsevfeallgka.dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslf 101
                 l+l+l+ +  +  +++ + ++al   + +++e+++++   lpr  +allvGa+L++aG+l+Q+v+rNpLa+P++lG+ssga lg+++a+l+  +  ++ 
  EHU02391.1  17 LALVLTAINLQQALPTNQWLQALWTPDsSNIEQMVFHYSLLPRWSLALLVGAGLGLAGLLFQQVLRNPLAEPGTLGVSSGAQLGMTVATLWH-LPGGAL 114
                 34444444455568999999999998866777777888889**************************************************6.999999 PP

       FecCD 102 alplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkl 200
                 a  +aa  gall+ +lv+ +a + k+ sp++liLaG+++s+   a++++++++ n ++l+++  w +G+l+++sw++v  l++ l+l+l+l+l+l r+l
  EHU02391.1 115 AHQFAASGGALLVGALVFSVA-WCKRLSPVTLILAGLVLSLYSCAVNQIFAIF-NHDQLQNMFLWSTGTLNQMSWDSVTQLWPRLVLALALSLALLRPL 211
                 *********************.*****************************99.99******************************************* PP

       FecCD 201 dllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarllls.ptelpvgivt 298
                 +l+ l+d +Ak+lG+    +rl++l+l++ll+a  v+++G+igF+GL +P +arll g++  + ++l+ l+Galll lad  + +l++   e+++g vt
  EHU02391.1 212 TLMGLDDGVAKNLGLALSATRLAVLVLAILLSAELVSVAGIIGFIGLFAPLLARLLGGRRLLSRMLLAPLIGALLLWLADACVLWLTAhWREVSTGTVT 310
                 ***************************************************************************************98899******* PP

       FecCD 299 aliGapffiyll 310
                 al+G+p++++ll
  EHU02391.1 311 ALLGVPILLALL 322
                 *********998 PP

  == domain 2  score: 232.7 bits;  conditional E-value: 2.8e-73
       FecCD  37 ivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslfalplaaflgallalllvlllarkrkgasplkliL 135
                  +l +r prvlaal vG +L+vaG l+Q++t Np+a+P++lGissgaa g+v++l+++ ++  l+ l+ a  lga+++l++++l+a +r+g+sp++++L
  EHU02391.1 385 QLLPWRAPRVLAALEVGLMLGVAGSLIQRLTGNPMASPEVLGISSGAACGVVMMLFFV-PGNALAFLLPAGALGAAITLAVIMLVA-SRGGFSPERMLL 481
                 47889****************************************************8.666666677777789999999999999.9*********** PP

       FecCD 136 aGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkldllalgdetAkslGvnvervrllllllvalltav 234
                 aG+a+++ +  + +ll++   + +++ +l+w++Gs++++s +++l ++  +++l++l+ l +r+l++l lg  tA+s+G+  +  rl+llll+a+lta+
  EHU02391.1 482 AGMALNSAFVTILMLLMAS-GDPRMAGLLTWISGSTYNISATQALQSAGCAAVLVALAPLASRWLTILPLGSMTARSVGMALTGSRLALLLLAAALTAC 579
                 *****************99.889**************************************************************************** PP

       FecCD 235 avalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivtaliGapffiylllr 312
                 a+  +Gp++FvGL++Ph+ar+l  ++   +++ls++lGa l+++ad+ +r+l++p+++p+g++ +++Gap+fi+ll+r
  EHU02391.1 580 ATLTIGPLSFVGLMAPHMARMLGFRRALPQVLLSGVLGAGLMVAADWCGRMLAFPSQIPAGLMATFLGAPYFIWLLRR 657
                 ********************9888****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4480.22
//
Query:       EHU02392.1  [L=426]
Description: glutamate-1-semialdehyde aminotransferase (aminomutase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-78  262.8   0.0    4.7e-78  262.6   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    1.8e-06   27.4   0.0      3e-06   26.7   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
        0.1   12.5   0.0       0.75    9.7   0.0    2.3  2  DUF1949        Domain of unknown function (DUF1949)


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.6   0.0   7.9e-82   4.7e-78       9     401 ..      32     418 ..      26     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: 262.6 bits;  conditional E-value: 7.9e-82
                  SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHH CS
  Aminotran_3   9 lllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKl 106
                  ++l+i+ a+G+ l+d+dgk y+D v+s+ ++ lGh+++ + +av e+a+    +sfga t+ + + +a+ + +l+p  +++v ++nsG+eA+++A++l
   EHU02392.1  32 VPLFIEHADGACLYDADGKAYIDYVGSWGPMVLGHNNEGIRQAVIEAAQRG--LSFGAPTEME-VTMAQLVCDLVPS-MEMVRMVNSGTEATMSAIRL 125
                  5699**********************************************9..9999988665.6799999*****9.******************** PP

                  HHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETT CS
  Aminotran_3 107 arkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqge 204
                  ar        t + kii+f+g++HG+    l  +gs  +  tl +p++p+v+   ++ + ++ +n+      l  ++a  ++    vaA+ivEp+ g+
   EHU02392.1 126 ARG------FTGRDKIIKFEGCYHGHADHLLVKAGS--GALTLGQPNSPGVPADFAKHTLTCTYND------LDSVRAAFEQYPAAVAAIIVEPVAGN 209
                  ***......***************************..999999*******999999999999999......677778779999************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS...B--TTTT-HHH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs...hgsTfgGnpla 297
                  +  ++++p+fl +lr+lc++ ++lli+DEv+tGf  +  G   A +h++v+pDl++l+K ++gG+p+ a+ +++evm+alap +   +++T +Gnp+a
   EHU02392.1 210 MNCIPPQPDFLPGLRALCDEFGALLIIDEVMTGFrvALGG---AQAHYNVKPDLTCLGKIIGGGMPVGAFGGRREVMSALAPTGpvyQAGTLSGNPVA 304
                  **********************************866677...9999***********************************99999*********** PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EEETTTEEE CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlilsaGdnvir 383
                  +a+  a l+ i++  + ++ ++l ++l +gL e++ +++    v ++G m+++ +++++ v+             k++++ ++e+Gv++ ++      
   EHU02392.1 305 MAAGYACLTQIAQPGMHDRLNRLTEQLAQGLVEAARQENIPVVVNQVGGMFGLFFTDADSVTCyqdvtqcdverfKRFFHLMLEEGVYFAPSAF--EA 400
                  **************************************9**************7777777665999*********99***********988763..23 PP

                  E---TT--HHHHHHHHHH CS
  Aminotran_3 384 llppliitdeeidellei 401
                   + +l  tde+i+  +e+
   EHU02392.1 401 GFMSLAHTDEDIQHTVEA 418
                  344566667777766665 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     5e-10     3e-06     129     362 ..     181     418 ..     167     418 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 5e-10
                    EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTS CS
  Aminotran_1_2 129 hldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafG 224
                     +dl+++ +a ++ p+  +   +i+   + N+    + ++ l  l +l+++ ++ll++De+  gf     +a+a + nv+++        l+K  G
     EHU02392.1 181 YNDLDSVRAAFEQYPAAVA--AIIVEPVAGNMNCIPPQPDFLPGLRALCDEFGALLIIDEVMTGFRVALGGAQA-HYNVKPDLT-----CLGKIIG 268
                    5899999999999999998..677777789***********************************998557766.999999755.....799**97 PP

                    SGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....TEEEECCS.CSSEEEEEETH CS
  Aminotran_1_2 225 laGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael....glkvlasq.sgmflltdlsa 314
                      G  vG++ g  +v s+l+     +   + ++ ++++aa   a l+q     m +rl++++++l ++L e+    +++v+ +q +gmf l  ++a
     EHU02392.1 269 -GGMPVGAFGGRREVMSALAPTGPVYQAgTLSGNPVAMAA-GYACLTQIAQPGMHDRLNRLTEQLAQGLVEAarqeNIPVVVNQvGGMFGLFFTDA 362
                    .36677****************999999555555555555.4555567799********************9*******************99999 PP

                    H..............CHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 315 e..............takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                                   + k ++  +lee gvy  p + f+    + +++ ++t+e++++ vea
     EHU02392.1 363 DsvtcyqdvtqcdveRFKRFFHLMLEE-GVYFAP-SAFE---AGFMSL-AHTDEDIQHTVEA 418
                    988888777777666666666669999.*****9.6666...566889.9999999998875 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00013      0.75       1      23 [.     177     199 ..     177     202 .. 0.90
   2 ?   -0.8   0.0      0.23   1.4e+03       8      22 ..     220     234 ..     217     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
     DUF1949   1 ltvdYadlgkverlLeqfgativ 23 
                 lt+ Y+dl+ v++ +eq+ a ++
  EHU02392.1 177 LTCTYNDLDSVRAAFEQYPAAVA 199
                 79****************99886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.23
     DUF1949   8 lgkverlLeqfgati 22 
                 l+ +++l+++fga +
  EHU02392.1 220 LPGLRALCDEFGALL 234
                 6789********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2899.65
//
Query:       EHU02393.1  [L=115]
Description: putative HesB/IscA/SufA family iron binding protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-21   75.4   0.0    4.1e-21   75.3   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   2.3e-25   4.1e-21       3     110 ..      10     110 ..       8     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 2.3e-25
                  EEE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLk 97 
                  +++t+aAa+k+k+l+a+++++   lr+++  gg       Cs g++y + + d+  ++ d+++e++g++++v+++sl++l  g ++d++e+l+++++ 
   EHU02393.1  10 LQFTDAAANKVKNLIADEDNPalkLRVYITGGG-------CS-GFQYGFTFDDQM-NDGDMTIEKQGVSLVVDPMSLQYL-VGGSVDYTEGLEGSRFI 97 
                  89***************9999977777777777.......**.***********9.************************.9**************** PP

                  EETCCEEEEEEEE CS
  Fe-S_biosyn  98 sdngilddnvglg 110
                   +n+++++++g+g
   EHU02393.1  98 VTNPNAKTTCGCG 110
                  ************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 855.00
//
Query:       EHU02394.1  [L=83]
Description: hypothetical protein CKS_5246 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   13.4   0.0      0.057   13.2   0.0    1.2  1  HCV_NS4a  Hepatitis C virus non-structural protein NS4a


Domain annotation for each model (and alignments):
>> HCV_NS4a  Hepatitis C virus non-structural protein NS4a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-06     0.057       3      40 ..       6      47 ..       4      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-06
    HCV_NS4a  3 vvlvGlalAglAiyalttGS....vvvvtrwsvnGkgppvvv 40
                 + +Gl++A  A   +ttGS    +v+  r +vn+  +p  +
  EHU02394.1  6 LLAIGLVIAQQAFAGSTTGSinarLVIYSRCEVNSVRSPSSP 47
                6889****************5555599999999997744444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 734.08
//
Query:       EHU02395.1  [L=270]
Description: substrate-binding component of an ABC superfamily vitamin B12 transporter [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-21   76.2   0.0    3.5e-21   75.9   0.0    1.0  1  Peripla_BP_2  Periplasmic binding protein
     0.0084   16.0   0.0      0.022   14.7   0.0    1.7  1  YAcAr         YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   3.9e-25   3.5e-21       1     210 [.      24     222 ..      24     228 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.9e-25
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHH CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgesl 97 
                   +++l+p  te+ +a G+t+  v+v++++ +p++a+    +i  v + +  ++E++++lkPD+v++ +g+   ++  +l +sgi++  v +s t+++ 
    EHU02395.1  24 VITLAPHLTELAFAAGITP--VAVSAWSGYPAEAQ----KIEQVATWQGMNLERILQLKPDVVLAWPGGTSSRQVAQLVHSGIHVEWVATS-TLDDM 113
                   78999**************..*************9....79999999**********************88888899*************9.56999 PP

                   HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-HHHHHHH-- CS
  Peripla_BP_2  98 keqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisaEqilasdp 194
                     ++  l+    ++++a ++++++ + +aa++++++ +  +pv vf +   ++ + a+  +  +d++   g++ni+a+s   ++ ++s+Eq+l ++p
    EHU02395.1 114 IHSLAGLARWSPSPQRATQAATQLRQQVAALRQRYRPQ--PPVRVFVQFGLSPLYTAAKATLQNDIIGLCGGQNIFAAS-PVSWPQVSREQVLMRHP 207
                   99999999999999************************..999999999999***************************.9**************** PP

                   SEEEEEEHHHHT-S-- CS
  Peripla_BP_2 195 dvifvsgraeadnktg 210
                   +vi+ +g  + ++ t 
    EHU02395.1 208 QVIVTTGG-SQQAETL 222
                   ******99.5444444 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.4e-06     0.022      23      64 ..     201     241 ..     181     243 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-06
       YAcAr  23 klhaeapidmvlvhGgakGaDrlAarWAaergvelvrfpaDw 64 
                 +++ ++p ++++ +Gg++ a++lA+ W  + +v +++ + Dw
  EHU02395.1 201 QVLMRHP-QVIVTTGGSQQAETLAQFWRPQLNVRIIAINEDW 241
                 7899***.699999999*********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2380.70
//
Query:       EHU02396.1  [L=232]
Description: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-47  161.9   2.3    1.7e-47  161.7   2.3    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   2.3   9.2e-52   1.7e-47       2     233 ..       3     226 ..       2     227 .. 0.93

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 9.2e-52
                 EEEEESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEES CS
   PNP_UDP_1   2 iaiivgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainf 100
                  +ii+++++ev ll+++  e+ +  +  +g +++tGtl+g+ v ++++GiGk++aa + ++ ll+  +++ +i++G+aGgl ++lkvGD+v++d++ ++
  EHU02396.1   3 AGIIGAMEQEVTLLRDK-IENRQTLSL-AGCEIYTGTLNGVDVALLKSGIGKTSAA-MGTTLLLQLCKPDLVINTGSAGGLASSLKVGDIVVSDEVRYH 98 
                 69***************.888888888.****************************.****************************************** PP

                 SSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CHHHHHHHHHHTC.-CEEESSHHHHHHHHHHTT--EEEEEEEE CS
   PNP_UDP_1 101 dgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaeteaelrllrrlg.adaveMEtaavaqlArelgipfaairvvs 198
                 d + +++g++ + q + ++++++ad++l+a++++  ++l+ + +rG+v+++d f +  +  +r+ +++  a aveME+ a+ ++++++++pf+++r++s
  EHU02396.1  99 DADVTAFGYEPG-QMAGCPAAFTADSKLIAAAEACIQQLNLNAVRGLVVSGDAFINGAAPLARIRATFPqAIAVEMEATAIGHVCHQFNVPFVVVRAIS 196
                 *****9999877.*********************999999******************8888888888888899************************* PP

                 ETTTBETTCTCH.HCCCHHHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 199 dlaaggadaeatheeveefaqeaaknaaalllall 233
                 d+a++     ++h  + ef+  aak+++  ++ ll
  EHU02396.1 197 DVADQ-----ESHLSFDEFLSVAAKQSSLMVENLL 226
                 *5554.....5579999999999999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 2180.15
//
Query:       EHU02397.1  [L=496]
Description: deoxyguanosine triphosphate triphosphohydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-10   40.6   0.0    8.3e-10   38.9   0.0    2.0  2  HD        HD domain
    3.8e-10   40.1   3.7    6.9e-05   23.3   0.3    3.5  3  HD_assoc  Phosphohydrolase-associated domain
  ------ inclusion threshold ------
      0.051   13.8   0.0       0.17   12.2   0.0    1.8  1  DUF2267   Uncharacterized conserved protein (DUF2267)
       0.12   12.2   0.0         16    5.4   0.0    2.6  2  DUF3368   Domain of unknown function (DUF3368)


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.9e-13   8.3e-10       1      54 [.      66     136 ..      66     192 .. 0.88
   2 ?   -3.2   0.0       2.1   9.4e+03      78      92 ..     238     252 ..     222     271 .. 0.64

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.9e-13
                 HHHHHHHHHHHHHHHHHHHHH.................HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCT CS
          HD   1 rleHsleVaklarrlaedlge.................eedrellllaaLlHDiGkgpfgdafekkeeefe 54 
                 rl+HsleV + +r + +++                    +++ l+++a+LlHD+G++pfg+++e + ++++
  EHU02397.1  66 RLTHSLEVQQTGRYISKEILQtlkmqgglakyglddmeGAFESLVEMACLLHDVGNPPFGHFGEAAINDWF 136
                 789****************99*******************************************9854433 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
                 HHHHHHHHHTTCCHH CS
          HD  78 ledvaklirehhesw 92 
                 l ++ +l ++h+++ 
  EHU02397.1 238 LRTATNLTEHHRFPL 252
                 456667777777654 PP

>> HD_assoc  Phosphohydrolase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.27   1.2e+03      37      72 ..     278     317 ..     268     322 .. 0.74
   2 !   15.3   0.1   4.8e-06     0.021      10      47 ..     369     406 ..     363     429 .. 0.87
   3 !   23.3   0.3   1.5e-08   6.9e-05      69      92 .]     468     491 ..     417     491 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.27
    HD_assoc  37 riireLfealle.....dperllpeefrarleaaeddaraR 72 
                   +  L+e+l +     + +++  +++ +++++a+++ ++R
  EHU02397.1 278 FNVDSLYEYLSKawgtiNNNDAFSRTVGEAWREAGSK-KRR 317
                 5578899999887777756669999999999999984.333 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.8e-06
    HD_assoc  10 eiaeLkkflfenvyrhpevqreeekarriireLfeall 47 
                  ++ +k+++ ++v++h+ev+++e ++ r+i+ L e++ 
  EHU02397.1 369 LLQIFKTVARQQVFNHSEVEQLELQGYRVIKGLLEIYQ 406
                 57889******************************984 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 1.5e-08
    HD_assoc  69 araRvVcDyiAgmTDryalrlyar 92 
                  r R + Dyi+gmTD ya ++y+r
  EHU02397.1 468 YRFRLIQDYISGMTDLYAWDEYRR 491
                 688*******************97 PP

>> DUF2267  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.8e-05      0.17      43     110 ..     136     200 ..     131     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
                 HHTTS-HHHHHHHHTT--TTS-----SHHHHHHHHHHTS.....EHHHHHHHHHHHHHHHS-HHHHHH CS
     DUF2267  43 laaqLPeelrgllrdgwppvepgkrfdreeflervaeelgvdpedaeqaaraVfaalkealsegeied 110
                 +++ LP el + l +g +   +++r d +++ + ++++l ++ e  +qa+r V ++l+  ls  +++ 
  EHU02397.1 136 FEDNLPAELVDPLVAGVEN--EAQRADFDRMNAMIRQDL-CHFEGNAQAIRMVHSLLQLNLSYSQVAC 200
                 7899************988..8889**************.******************9999877765 PP

>> DUF3368  Domain of unknown function (DUF3368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.01        45      28      42 ..      74      88 ..      72      91 .. 0.88
   2 ?    5.4   0.0    0.0035        16      27      41 ..     222     236 ..     220     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.01
     DUF3368 28 iqaGfrispklyaev 42
                +q+G++is+++++++
  EHU02397.1 74 QQTGRYISKEILQTL 88
                79*********9987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0035
     DUF3368  27 LiqaGfrispklyae 41 
                 +++ Gf++s++ y  
  EHU02397.1 222 MKKPGFYLSEREYID 236
                 7999*******9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.34
# Mc/sec: 4413.17
//
Query:       EHU02398.1  [L=482]
Description: serine endoprotease (protease Do), membrane-associated [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-32  113.8   0.6    2.3e-32  113.0   0.6    1.5  1  Trypsin_2      Trypsin-like peptidase domain
    1.1e-26   92.9   5.4    2.1e-12   47.2   0.1    3.4  3  PDZ            PDZ domain
    7.9e-22   77.4   3.5    5.5e-13   49.1   0.1    2.8  3  PDZ_2          PDZ domain
    1.5e-19   70.7   0.3    2.6e-19   69.9   0.3    1.4  1  Trypsin        Trypsin
    9.8e-19   67.0   3.9    1.8e-09   37.3   0.4    3.0  3  PDZ_6          PDZ domain
     0.0022   17.9   0.8        4.1    7.5   0.1    3.4  3  Tricorn_PDZ    Tricorn protease PDZ domain
  ------ inclusion threshold ------
      0.016   15.2   0.0        2.7    8.1   0.0    2.8  2  PDZ_1          PDZ-like domain
      0.021   15.3   0.0       0.15   12.5   0.0    2.5  3  DUF2274        Protein of unknown function (DUF2274)
      0.036   12.7   0.6       0.31    9.6   0.5    2.0  2  Peptidase_S46  Peptidase S46
      0.067   12.9   0.1       0.14   11.8   0.1    1.6  1  DUF3394        Domain of unknown function (DUF3394)
      0.092   12.4   0.0       0.21   11.3   0.0    1.6  1  Tudor_2        Jumonji domain-containing protein 2A Tudor dom


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.6   1.4e-35   2.3e-32       1     150 []     121     257 ..     121     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.4e-35
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggek 98 
                 GsG++++++ g+++Tn+Hvv++a++ +v           +dgr ++akv+++dp++D+Al+++  + +++l ++++++s++l++g+ ++++G+p g ++
  EHU02398.1 121 GSGVIINAEkGYVVTNNHVVNDATKIQV---------KLSDGRSYDAKVIGKDPSSDIALIQL--EGAKNLTAIKMADSDNLRVGDYAVAIGNPYGLGE 208
                 9********77*****************.........9*************************..*********************************9 PP

   Trypsin_2  99 sgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   +v+sGivs++ + ++ + ++ e+f+qtdaa+++G+SGG+l++ +G+++G+
  EHU02398.1 209 --TVTSGIVSALGR-SGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGI 257
                 ..9***********.************************************8 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.61   9.9e+02      37      55 ..     184     202 ..     178     212 .. 0.83
   2 !   47.2   0.1   1.3e-15   2.1e-12       8      81 ..     294     374 ..     286     375 .. 0.86
   3 !   45.7   0.6   3.9e-15   6.4e-12      12      82 .]     402     471 ..     391     471 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.61
                 SHHHHHTSSTTEEEEEETT CS
         PDZ  37 gaaeadglkvGDkIlsvNg 55 
                  +a+ d+l+vGD  +++++
  EHU02398.1 184 KMADSDNLRVGDYAVAIGN 202
                 5789999*****9999887 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 1.3e-15
                 TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   8 grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 +rg+lG+ + + +++        +++g+fvs+v+p++aa+++ +k+GD+I+s+Ng+++++++ ++a     + + +++L i
  EHU02398.1 294 KRGELGIMGTELNSELakamkvdAQRGAFVSQVVPNSAAAKGVIKAGDVIVSMNGKPLTSFASLRAEVGSLPVGTTLKLGI 374
                 67777777777777667789**9*************9999999**********************9998888888888887 PP

  == domain 3  score: 45.7 bits;  conditional E-value: 3.9e-15
                 SSEEEEEETTSS.SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEEE CS
         PDZ  12 lGfslkggsdqr.gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLtil 82 
                  G++++  s+++ ++kg+ v +v +g+aa++ glk+GD Il+vN++ v+n+ ++++++ +k++  +++L+++
  EHU02398.1 402 TGIEGADLSNNSgKEKGVRVDSVKAGSAAARIGLKKGDLILGVNQQAVSNLGELRKILDTKPP--VLALNVQ 471
                 567777777766778************************************************..8999886 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       7.6   1.2e+04      42      58 ..     136     153 ..     133     160 .. 0.64
   2 !   49.1   0.1   3.3e-16   5.5e-13       3      82 .]     298     387 ..     296     387 .. 0.90
   3 !   28.6   0.1   8.2e-10   1.3e-06       5      61 ..     407     464 ..     403     479 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.6
                 TTB--SSHHHHHHHHH.T CS
       PDZ_2  42 dgkkvksledlislll.k 58 
                 ++++v++ ++++ +l+ +
  EHU02398.1 136 NNHVVNDATKIQVKLSdG 153
                 667777777777777644 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 3.3e-16
                 ..XX------............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2   3 lGvsvsdeed..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                 lG++ +++++          ++g+ v +V +++ aak  +kagDvi++ +gk+++s ++l+ ++ +   G+t+kl +lRdgk ++v+v+l
  EHU02398.1 298 LGIMGTELNSelakamkvdaQRGAFVSQVVPNSAAAKGVIKAGDVIVSMNGKPLTSFASLRAEVGSLPVGTTLKLGILRDGKPLDVTVQL 387
                 6666666666666777777799*****************************************************************987 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 8.2e-10
                 XX------...-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-T CS
       PDZ_2   5 vsvsdeed.tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkp 61 
                 + +s++++ ++gv v sVk g+ aa+ glk+gD il v+ ++v++l +l++ l +k p
  EHU02398.1 407 ADLSNNSGkEKGVRVDSVKAGSAAARIGLKKGDLILGVNQQAVSNLGELRKILDTKPP 464
                 55566555678**************************************998887766 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.3   1.6e-22   2.6e-19      26     219 ..     120     282 ..     101     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.6e-22
                 EEEEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEE CS
     Trypsin  26 lCgGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttc 122
                 l +G++i+++  +v+T++H+v++a++++v       k s+g + ++kv         +ps    Dial++l+      ++   i+ ++ s++l vg  +
  EHU02398.1 120 LGSGVIINAEkgYVVTNNHVVNDATKIQV-------KLSDGRSYDAKVIG------KDPSS---DIALIQLEGA----KNLTAIKMAD-SDNLRVG--D 195
                 446999998889***********777777.......55566323333333......67887...*********9....9999999999.6656666..* PP

                 EEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS.EEEEEEGGGGHH CS
     Trypsin 123 lvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvytkvssyld 219
                 +++++g+++  g  +t++++ v+++ r+  + +      en+++++a     ++++G+SGG+lv+ +gel+Gi+++    + gn  +g++++ +++++
  EHU02398.1 196 YAVAIGNPYGLG--ETVTSGIVSALGRSGLNVE----NYENFIQTDA-----AINRGNSGGALVNLNGELIGINTAILAPDGGNIgIGFAIPSNMVKN 282
                 ************..99**9**999999844443....57********.....*************************7777777669***99998876 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.3   3.7e+03      15      26 ..     190     201 ..     185     202 .. 0.71
   2 !   29.7   0.0   2.5e-10   4.1e-07       1      38 [.     322     357 ..     322     365 .. 0.91
   3 !   37.3   0.4   1.1e-12   1.8e-09       1      56 []     420     472 ..     420     472 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.3
       PDZ_6  15 GlrvGDiilsvN 26 
                  lrvGD+ ++++
  EHU02398.1 190 NLRVGDYAVAIG 201
                 49****977775 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 2.5e-10
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNGqpveglsladv 38 
                 +V++V+p+s A++ G +++GD+i+s NG+p+  +s a +
  EHU02398.1 322 FVSQVVPNSAAAK-GvIKAGDVIVSMNGKPL--TSFASL 357
                 79**********9.77**************9..888766 PP

  == domain 3  score: 37.3 bits;  conditional E-value: 1.1e-12
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 +V +V++gs A+r Gl+ GD+il vN q v   +l +++ +l    +  + l v+r
  EHU02398.1 420 RVDSVKAGSAAARIGLKKGDLILGVNQQAV--SNLGELRKILD-TKPPVLALNVQR 472
                 699***************************..**********9.777777777776 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.7   4.3e+03      22      41 ..     207     226 ..     206     236 .. 0.84
   2 !    7.3   0.0    0.0028       4.6      22      59 ..     320     356 ..     299     397 .. 0.79
   3 !    7.5   0.1    0.0025       4.1      28      67 ..     425     462 ..     417     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.7
                  S-TTSSS-B-GGGGGS---. CS
  Tricorn_PDZ  22 GdswdeearSPLaepGvnvr 41 
                  G++  +   S+L ++G+nv+
   EHU02398.1 207 GETVTSGIVSALGRSGLNVE 226
                  77788888999*****9996 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0028
                  S-TTSSS-B-GGGGGS---.TT-EEEEETTEE-BTTB- CS
  Tricorn_PDZ  22 GdswdeearSPLaepGvnvreGdlilavdgepvskekg 59 
                  G+  ++ +  + a++Gv  ++Gd+i++ +g+p+++ ++
   EHU02398.1 320 GAFVSQVVPNSAAAKGVI-KAGDVIVSMNGKPLTSFAS 356
                  555555555566788986.9************987554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0025
                  S-B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTT CS
  Tricorn_PDZ  28 earSPLaepGvnvreGdlilavdgepvskekgiaelLvgk 67 
                  +a S+ a+ G++  +Gdlil v+ + vs+  ++ ++L  k
   EHU02398.1 425 KAGSAAARIGLK--KGDLILGVNQQAVSNLGELRKILDTK 462
                  566777777887..9*************999888887655 PP

>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.032        51      18      65 ..     305     354 ..     299     366 .. 0.82
   2 ?    8.1   0.0    0.0016       2.7      39      73 ..     426     460 ..     408     463 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.032
       PDZ_1  18 Lsyqlarsyaipvk.gvyvseasgsfklssk.ekkgviitsinnqptpnL 65 
                 L  +la  +++  + g +vs+   +++ +++ +k g +i s n++p  + 
  EHU02398.1 305 LNSELAKAMKVDAQrGAFVSQVVPNSAAAKGvIKAGDVIVSMNGKPLTSF 354
                 555777788887777**********99998889************98665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
       PDZ_1  39 sgsfklsskekkgviitsinnqptpnLdefievvk 73 
                 +gs +   + kkg +i  +n+q ++nL e+ +++ 
  EHU02398.1 426 AGSAAARIGLKKGDLILGVNQQAVSNLGELRKILD 460
                 44444555689******************999875 PP

>> DUF2274  Protein of unknown function (DUF2274)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.8   6.2e+03      50      58 ..      44      52 ..      24      54 .. 0.75
   2 ?   -2.7   0.0       5.2   8.5e+03      55      65 ..     229     239 ..     228     241 .. 0.80
   3 ?   12.5   0.0   9.3e-05      0.15       2      28 ..     368     394 ..     367     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
     DUF2274 50 iapMLerFl 58
                 apMLe+ +
  EHU02398.1 44 LAPMLEKVM 52
                589**9988 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.2
     DUF2274  55 erFlatDrgFa 65 
                 e+F++tD + +
  EHU02398.1 229 ENFIQTDAAIN 239
                 78*****8765 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 9.3e-05
     DUF2274   2 tkLkLgplpddkpvkltvelpaalhrd 28 
                 t+LkLg l d kp+ +tv+l+ + + +
  EHU02398.1 368 TTLKLGILRDGKPLDVTVQLQQSTQDK 394
                 79******************9987665 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.094   1.5e+02      45      70 ..     117     143 ..     111     156 .. 0.77
   2 ?    9.6   0.5   0.00019      0.31     627     651 ..     234     258 ..     224     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.094
                    ETTTEE-EE-.STT-EEEE-HHHHHHH CS
  Peptidase_S46  45 flggCtasfV.SpeGLvlTNHHCayga 70 
                    f    ++ ++ +++G v+TN H++ +a
     EHU02398.1 117 FRALGSGVIInAEKGYVVTNNHVVNDA 143
                    55667888883468*********9876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00019
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG +++n +gel+G++
     EHU02398.1 234 TDAAINRGNSGGALVNLNGELIGIN 258
                    5677889****************97 PP

>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.9e-05      0.14      62     152 ..     355     448 ..     341     455 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.9e-05
     DUF3394  62 selvevveelpkgselrlkvegenlegeeiektvalplgeeatgeerLeaaGltlleedg......kvlvdevefgspaekagldfdfeivevevpa 152
                 ++l ++v +lp g +l+l + +   +g++++ tv+l+ +++++++     +G++  +  +       v+vd+v+ gs a++ gl+ ++ i+ v+ +a
  EHU02398.1 355 ASLRAEVGSLPVGTTLKLGILR---DGKPLDVTVQLQQSTQDKVQSATIYTGIEGADLSNnsgkekGVRVDSVKAGSAAARIGLKKGDLILGVNQQA 448
                 5666778888888888887654...68999999999999966666654455553333322223333899*******************999998765 PP

>> Tudor_2  Jumonji domain-containing protein 2A Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.21       3      22 ..     145     164 ..     144     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
     Tudor_2   3 dVivrwtDgryYnakvigvs 22 
                 +++v+ +Dgr Y+akvig +
  EHU02398.1 145 KIQVKLSDGRSYDAKVIGKD 164
                 689**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3451.27
//
Query:       EHU02399.1  [L=385]
Description: DNA-binding transcriptional activator [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-48  161.8   0.1    9.7e-48  161.2   0.1    1.3  1  Diacid_rec  Putative sugar diacid recognition
    4.3e-21   74.5   2.2    2.5e-20   72.0   0.4    2.7  3  HTH_30      PucR C-terminal helix-turn-helix domain
    7.3e-19   68.1   0.3    1.5e-18   67.1   0.3    1.6  1  GGDEF_2     GGDEF-like domain


Domain annotation for each model (and alignments):
>> Diacid_rec  Putative sugar diacid recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.1   1.6e-51   9.7e-48       1     133 [.       6     138 ..       6     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 1.6e-51
  Diacid_rec   1 LdkelAqkIveeimeiigyninvmdekGiIIasgdksRigtlHegAlevikekkeveiteeeakklkgvkpGinlpivfngevvGviGitGepeevrpy 99 
                 Ld +lAq+Iv ++m+ii+ n+nvmd++G+II+sgd++Rig+lHegAl v+++++ v i+++ a++l+gv+pGinlp++++g +vGviG+tGep  +r+y
  EHU02399.1   6 LDARLAQEIVARTMKIIDGNVNVMDARGRIIGSGDRERIGELHEGALLVLSQGRIVDIDDAVARQLHGVRPGINLPLRIDGMIVGVIGLTGEPGALRHY 104
                 7899*********************************************************************************************** PP

  Diacid_rec 100 aelvkktaellleeaelkeqlqrrerakeelvee 133
                 +elv ++ae++le+a+l + l +++r +eelv +
  EHU02399.1 105 GELVCMAAEMMLEQARLLHMLAQDSRLREELVLN 138
                 ******************************9976 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.077   4.6e+02      33      48 ..     149     164 ..     144     171 .. 0.82
   2 ?   -2.7   0.1      0.92   5.5e+03      34      51 ..     229     246 ..     229     250 .. 0.66
   3 !   72.0   0.4   4.2e-24   2.5e-20       1      58 [.     323     380 ..     323     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.077
                 HHHHHHHHS--TTSHH CS
      HTH_30  33 Lrrieellgldlddpd 48 
                 L  + + lg+dl++p+
  EHU02399.1 149 LTEWAQRLGIDLNQPR 164
                 7788999*****9997 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.92
                 HHHHHHHS--TTSHHHHH CS
      HTH_30  34 rrieellgldlddpddrl 51 
                 rrie+l+++  +++  r+
  EHU02399.1 229 RRIEQLMQRMKESGHLRM 246
                 699999987666555555 PP

  == domain 3  score: 72.0 bits;  conditional E-value: 4.2e-24
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlr 58 
                 L+ TL a++ n+ +  at++aL++HrnTl yRL+ri el+gl+l   ddrl Ly+A++
  EHU02399.1 323 LRGTLSAWFSNNVQPGATSRALFIHRNTLEYRLNRIAELTGLNLGKVDDRLLLYIAIQ 380
                 567*****************************************************97 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.3   2.6e-22   1.5e-18       6     115 ..     147     272 ..     141     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.6e-22
     GGDEF_2   6 eellerarrlgldldgpyvvvvielee......daerllraleealralgpdalvavrgd.rlvlllp......aedeedae......allerlarrlg 85 
                 ++l e+a+rlg+dl++p++v+vie+++      +a + l++l+++l + ++d+l+a+ +  + v+l p                    + +e+l +r++
  EHU02399.1 147 PQLTEWAQRLGIDLNQPRIVAVIEVDSgqlgvdSAMSELQQLQTLLTTPARDNLIAIVSLtEMVVLKPalnahgR------YdqhdhrRRIEQLMQRMK 239
                 499**********************887777767788************88888888666488888885443331......122334455555555555 PP

     GGDEF_2  86 g...lsvriGiGspveglaglrrSyreArrAlr 115
                 +   l+ ri++G+ ++g   ++rSyr Ar+++ 
  EHU02399.1 240 EsghLRMRIALGNFFTGMGSIARSYRTARTTMA 272
                 56666************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3024.84
//
Query:       EHU02400.1  [L=405]
Description: hypothetical protein CKS_5252 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-84  282.5   1.5      5e-84  282.1   1.5    1.2  1  Alginate_lyase  Alginate lyase


Domain annotation for each model (and alignments):
>> Alginate_lyase  Alginate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.1   1.5   2.8e-88     5e-84       2     272 .]      71     351 ..      70     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 282.1 bits;  conditional E-value: 2.8e-88
                     CCCCCCCHHTTS-TCCHHHHCCCC..HCTCCCH.S.CCCCTTSSC.HCCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHCTT CS
  Alginate_lyase   2 vtaksklsdksgdkhdylseapyw..datkpdglpyvrrdgqrnp.nedaecdlkaleawadavallalayyltgdkrYaekagellraWfldpk 93 
                     v++k    ++sg++hdyls ++yw  da ++ glp+ rrdg++np  +++++d+ ++++++++v++l+la+ ++gd rYa ka+ ++r+Wf+dp+
      EHU02400.1  71 VMDKGLV-PPSGSRHDYLSLSAYWwpDARQKTGLPWSRRDGEVNPdTKNNQTDGLRFARFSADVQALTLAWFFSGDVRYASKAQSMIRHWFIDPA 164
                     7778877.*****************999999**************999*********************************************** PP

                     TCCCCCCCCCCCBTT.....GGGGGGH.....HHHHHHHHCTTCSSSHHHHHHHHHHHHHHHHHHHHHCHHHCCCCTGCSHHHHHHHHHHHHHHH CS
  Alginate_lyase  94 trmnpnleyaqaikg...grgagiidt.....evldalalleaakalpekerkaiekWfkklldwlqtsrkgkdekaaknNHgywaalqvaaial 180
                     +rmnpnl++aq+++g   gr+ g++d+     +++dal+ll++++++++ +++a+++Wf ++l+wlqts+  ++e++a nNHg+w+ +qva ia+
      EHU02400.1 165 SRMNPNLNFAQGVPGistGRHDGVLDGryfatRIVDALILLRQSPGWRAGDEAALQRWFHDYLTWLQTSKLARQERHAANNHGSWYCVQVAGIAA 259
                     *********************************************************************************************** PP

                     HTT-HHHHHHHHHHHHHHHHHHHS-TTS-BHHHHGSGGGHHHHHHHHHHHHHHHHHHHHC.TT--GTC..TCTCCCHHHHHHHHHHHHH-THHH CS
  Alginate_lyase 181 vlgdrdlldkalkrykrailndqiapdGslpeElaRgtralhYsnfaLqalvmiaelaer.ngvdlwey.sedgktlkkavdfllpyvedpeew 272
                     +l ++++++ ++   k++ + +qia+dG++p+ElaR tr++hYs f+Lqal+ ia+l ++  g+dlw+y +++g++l +a+d+++p+++  ++w
      EHU02400.1 260 YLHNDAVMRDMMALAKTK-IGGQIARDGTQPLELAR-TRSFHYSFFNLQALTAIAALSSQrGGDDLWHYsGKQGGSLLAALDYMAPFSDSARRW 351
                     **************5555.5****************.********************8774788***********************9988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3132.33
//
Query:       EHU02401.1  [L=130]
Description: uncharacterized DUF3461 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-55  184.2   2.2    9.6e-55  184.1   2.2    1.0  1  DUF3461   Protein of unknown function (DUF3461)


Domain annotation for each model (and alignments):
>> DUF3461  Protein of unknown function (DUF3461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   2.2   5.3e-59   9.6e-55       1     125 []       1     125 [.       1     125 [. 1.00

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 5.3e-59
     DUF3461   1 myptLkslgiteleeiekytLrqegekDiLkiYfkkekgellaksvkfkfprqrkkvlvdsgseeykevseisavlrkvleeLdkltekkkeekdikek 99 
                 my+++kslgi+++++i++y+Lrqe+++DiLkiYf+k+kge++aksvkfk+prqrk+v +d+ s+ y+ev+eis++lr+v++eLd++ ++++ e+d+k+k
  EHU02401.1   1 MYDNIKSLGISNPDDIDRYSLRQEANNDILKIYFRKDKGEFFAKSVKFKYPRQRKTVVADNASQGYREVQEISPNLRYVIDELDQICQRDQVEVDLKRK 99 
                 9************************************************************************************************** PP

     DUF3461 100 llkdlkhlekvvnskikeierklekl 125
                 +l+dl+hle vv++ki+eie +lekl
  EHU02401.1 100 ILDDLRHLEGVVSHKIAEIESDLEKL 125
                 ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 937.90
//
Query:       EHU02402.1  [L=274]
Description: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-26   90.1   0.3    1.3e-25   89.4   0.3    1.3  1  THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-ter
    3.3e-13   49.1   1.6    3.3e-13   49.1   1.6    2.7  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase
    1.1e-12   47.1   9.4    4.8e-07   29.3   0.9    3.4  3  Hexapep    Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.3   2.1e-29   1.3e-25       1      67 []       3      69 ..       3      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 2.1e-29
                HHHHHHHHHHHTGGG--SSS--HHHHHHHHHHHHHHHTTSS-SEEEETTEEEE-HHHHHHHHHHHHH CS
   THDPS_N_2  1 sLesdIeaawerrdelepetagaearaaveevleaLdaGelRvAekkdgeWevneWvKkAiLLsFrl 67
                +L+s Ie+a+err++++p+++++e+r+a+++v+++Ld+GelRv ek dgeW++++W+KkA+LLsFr+
  EHU02402.1  3 QLQSVIESAFERRADITPTSVDTETRDAINQVIAKLDSGELRVSEKIDGEWVTHQWLKKAVLLSFRI 69
                69***************************************************************97 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.014        85      18      31 ..     150     163 ..     144     165 .. 0.79
   2 !   49.1   1.6   5.5e-17   3.3e-13       1      33 [.     175     209 ..     175     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
                 EEE-TT-EE-TT-E CS
   Hexapep_2  18 vslGdncvvgaGvv 31 
                  ++G+n++++ Gv 
  EHU02402.1 150 AQIGKNVHLSGGVG 163
                 589******99995 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 5.5e-17
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 p+iI+dnC+iGa+++i  Gv++++++v+++Gv+i 
  EHU02402.1 175 PTIIEDNCFIGARSEIveGVIVEEGSVISMGVYIG 209
                 89*************889***************96 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.093   5.6e+02      22      34 ..     111     123 ..     105     125 .. 0.66
   2 !   19.2   2.0   1.2e-07   0.00074       2      36 .]     132     166 ..     114     166 .. 0.94
   3 !   29.3   0.9     8e-11   4.8e-07       2      35 ..     176     209 ..     175     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.093
                 E-TTEEEETTEEE CS
     Hexapep  22 IGdnvkIgagvvi 34 
                 + +++ I++++v+
  EHU02402.1 111 VRKGAFIARNTVL 123
                 5567778887775 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.2e-07
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +++ ++++++ +a++g+ ++IG+nv++  gv+igg
  EHU02402.1 132 AFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG 166
                 78889999999**********************97 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 8e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 t+I++n++Ig+ + i ++V++ ++++I  gv+ig
  EHU02402.1 176 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIG 209
                 89*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2042.70
//
Query:       EHU02403.1  [L=882]
Description: uridylyltransferase/uridylyl-removing enzyme [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-35  120.2   1.7    2.8e-34  118.3   0.2    2.6  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase
    1.9e-19   69.1   0.1    1.9e-08   33.9   0.0    2.6  2  ACT            ACT domain
      9e-17   61.4   0.1    2.3e-16   60.1   0.1    1.8  1  HD             HD domain
    4.2e-07   30.2   0.0    1.2e-06   28.7   0.0    1.7  1  NTP_transf_2   Nucleotidyltransferase domain
    0.00018   21.4   0.0    0.00054   19.8   0.0    1.8  1  DUF294         Putative nucleotidyltransferase DUF294
  ------ inclusion threshold ------
      0.034   14.7   0.0       0.77   10.4   0.0    2.4  2  ACT_4          ACT domain
      0.065   13.3   0.0       0.17   12.0   0.0    1.7  1  Polbeta        Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.2   1.1e-37   2.8e-34       1     146 []     184     323 ..     184     323 .. 0.95
   2 ?   -0.4   0.1      0.43   1.1e+03      80     119 ..     536     574 ..     517     634 .. 0.67

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 1.1e-37
  GlnD_UR_UTase   1 rfmkakieeekarrgrsd.t..llepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrL 93 
                    rf++aki+e+++r+ r++ t  +lep+iK +pGGlRdi+++ +v+++++           ++++l+e+   g+lt++e  el+e+++fl+r++++L
     EHU02403.1 184 RFFAAKIDEQQERHTRYHgTsyNLEPDIKSSPGGLRDIHTLQWVARRHF-----------GATTLDEMSGFGFLTDAERSELNECQAFLWRIRFAL 268
                    799****************89****************************...........************************************ PP

  GlnD_UR_UTase  94 qlladrqthrLpfdeeeqrrlaealgy.redkaa...fmkelfqhaerVrrlfekll 146
                    +l   r ++rL+fd   q  +a++l+y  e++++   +mk+++++++r+++l+++ll
     EHU02403.1 269 HLSLPRYDNRLLFD--RQLSVARRLNYeGEGNEPverMMKDFYRVTRRIGELNQMLL 323
                    **************..***********7444444777*****************985 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
  GlnD_UR_UTase  80 reayrflrrlehrLqlladrqthrLpfdeeeqrrlaealg 119
                    re + + + ++h+L +   +q   + +     ++ ae ++
     EHU02403.1 536 RETQLVAWLVRHHLLMSVTAQRRDIQDP-TVIQQFAEVMQ 574
                    4455566888888888877777777754.66777777776 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.1e-11   5.5e-08       2      53 ..     701     750 ..     700     755 .. 0.89
   2 !   33.9   0.0   7.4e-12   1.9e-08       2      63 ..     808     869 ..     807     872 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.1e-11
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHH CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdee 53 
                  +++  pDrP+l+a+v+g l +r+++++ +++++s+d  ++ ++++iv +++
  EHU02403.1 701 EIFIWSPDRPHLFAAVAGELDRRNLSVHDAQIFTSRD--GMAMDTFIVLEPD 750
                 68999********************************..7999998887665 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 7.4e-12
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63 
                 +l++ + D+PGlLarv+ ++ad+g++++ + +++ +++v +++++   +  + +ee+ ++l+
  EHU02403.1 808 YLELVALDQPGLLARVGEVFADLGVSLHGARISTIGERVEDLFILANSERRALDEEMRQTLQ 869
                 7898999*****************************97666666666666666666666665 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.1   8.9e-20   2.3e-16       1     121 [.     460     593 ..     460     594 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 8.9e-20
                 HHHHHHHHHHHHHHHHHHHHH............HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
          HD   1 rleHsleVaklarrlaedlge............eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvakl 84 
                 ++eH+++V++ ++ +a++  +                elll+aaLlHDi+kg++gd              H++ ga+ + ++ + +gl+   +++va+l
  EHU02403.1 460 VDEHTIRVLQKLESFANEATRpqhplcvelwprLPQQELLLMAALLHDIAKGRNGD--------------HSVLGAQDALAFAEMHGLNsreTQLVAWL 544
                 579***************999************999*******************9..............***************************** PP

                 HHTTCCHHHHHHHH.........H...HHHCCTSCHHHHHHHHHHHHHH CS
          HD  85 irehheswegkkrp.........r...glaerqlslearivklaDrlaa 121
                 +r+h+ ++++++r+         +     + ++  +++ ++ +aD +a+
  EHU02403.1 545 VRHHLLMSVTAQRRdiqdptviqQfaeVMQNENRLRYLVCLTVADICAT 593
                 **************98877776516679999999***********9986 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.8e-10   1.2e-06       3      47 ..      66     111 ..      64     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 4.8e-10
                   HHHHHHHHHTT.TSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH CS
  NTP_transf_2   3 klleelkelep.vakvvlfGSyarGtalkgSDiDllvvlpeevsre 47 
                   +l++++ + +   + +v++G y rG++++ SDiD+l++++++ +++
    EHU02403.1  66 RLWRFFGFDSMkAITLVAVGGYGRGELHPLSDIDILILSRQPLDEQ 111
                   6666666666667899**************************7654 PP

>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.1e-07   0.00054       4      90 ..      36     119 ..      33     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.1e-07
      DUF294   4 erlvrallaegvkaealarlvselndallrrlielaeeelgkppvpfallvmGSeGReEqtlktDqDnalvledeeeeaareyfael 90 
                 ++ ++a++++g  +e+l ++ + + d+llrrl+++   +      +++l+++G  GR+E +  +D D  ++ +++ +e+a++   +l
  EHU02403.1  36 QQHLAAAFDAGEPVEDLIHARTLFIDRLLRRLWRFFGFD---SMKAITLVAVGGYGRGELHPLSDIDILILSRQPLDEQAAQSASAL 119
                 677889999***************************988...7899**********************9999997777776666555 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.19   4.8e+02       9      48 ..     702     740 ..     699     747 .. 0.86
   2 ?   10.4   0.0    0.0003      0.77       9      41 ..     809     841 ..     803     854 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.19
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktrkkdgla 48 
                 + + + dr++l+a ++  +   + ++++ ++ t + dg+a
  EHU02403.1 702 IFIWSPDRPHLFAAVAGELDRRNLSVHDAQIFTSR-DGMA 740
                 566678*************************9976.8876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0003
       ACT_4   9 leveaedrkglLaditqviseekanivsvnakt 41 
                 le++a d++glLa++ +v+++ +++++  +++t
  EHU02403.1 809 LELVALDQPGLLARVGEVFADLGVSLHGARIST 841
                 899***********************9999987 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.7e-05      0.17      17      46 ..      82     111 ..      73     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
                 TEEEEEE-S------EEEEEEEESS---HH CS
     Polbeta  17 ylFGSrakgkareeSDiDlavllkekldle 46 
                 +  G + +g++++ SDiD+ +l ++ ld +
  EHU02403.1  82 VAVGGYGRGELHPLSDIDILILSRQPLDEQ 111
                 4558999***************99984333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 6336.64
//
Query:       EHU02404.1  [L=264]
Description: methionine aminopeptidase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-53  180.5   0.2    3.6e-53  180.4   0.2    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.2     2e-57   3.6e-53       1     209 []      12     242 ..      12     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 2e-57
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCS.SSB--TTEEEEEEEEEEETTEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpn.drvlkegdlvlidagaeydgyas 90 
                    e++r a+r+a+++le +  +++pg+t+ el+++++a++ ++++      ++++fp++v++++n+ v+h++p+ dr+lk+gd+v+id+++  d y++
     EHU02404.1  12 EKMRVAGRLAAEVLEMIEPHVQPGMTTGELDRLCHAHITEKQQavsacLGYHGFPKSVCISVNEVVCHGIPSdDRPLKDGDIVNIDVTVIKDDYHG 107
                    68***************999***************99555555899999999*****************9965999******************** PP

                    EEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEE CS
  Peptidase_M24  91 DitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvf 184
                    D++ +++vGk+t + ++l+++++e ++  +++vkpG++l+e+++a+++++e++ + + +++++GHg+G  +h+e p+v +  + + g++l++Gm+f
     EHU02404.1 108 DTSKMFIVGKPTIQGERLCRVTQESLYLSLRLVKPGIRLRELGRAIQKYVEANDF-SLVREYCGHGIGKGFHEE-PQVLHydADDGGVVLQAGMTF 201
                    ****************************************************99*.999**************9.**97755444899******** PP

                    EEEEEEEEET.........TT.......E.EEEEBEEEEEES CS
  Peptidase_M24 185 tiEpgiyfap.........ge.......g.gvriedtvlvte 209
                    t+Ep++  a          g+       + +++ e+t++vt+
     EHU02404.1 202 TVEPMVN-AGdyrirtmkdGWtvktkdrSlSAQYEHTIVVTD 242
                    ****655.2223333444555777777777**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2060.76
//
Query:       EHU02405.1  [L=241]
Description: 30S ribosomal subunit protein S2 [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-93  311.3   0.0    2.7e-93  311.1   0.0    1.0  1  Ribosomal_S2  Ribosomal protein S2
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.31   11.0   0.0    1.4  1  TBK1_ULD      TANK binding kinase 1 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.1   0.0     3e-97   2.7e-93       1     215 []       9     224 ..       9     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 311.1 bits;  conditional E-value: 3e-97
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   +L+agvhfGhqtr+w pkmkp+I+g+rn++hii+lekt++++++a+  ++++++++gkilfvgtk++a+eavke a  +++++vn+rWlgG+LTN+k
    EHU02405.1   9 MLKAGVHFGHQTRYWCPKMKPFIFGARNKVHIINLEKTVPMFNEALAELTKISSRKGKILFVGTKRAAAEAVKESALSCDQFFVNHRWLGGMLTNWK 105
                   79*********************************************************************************************** PP

  Ribosomal_S2  98 tikksikklkeleeleedgeld.ltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpa 193
                   t+++sik+lkele++++dg++d ltkkeal+  +e +kle++lggik+m  lPd+++v+d+++e+ia+kEa++lgipv+aivDtn+dpd vdy+Ip+
    EHU02405.1 106 TVRQSIKRLKELETQSQDGTFDkLTKKEALMRARELAKLENSLGGIKDMGGLPDALFVVDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDYVIPG 202
                   *********************99************************************************************************** PP

  Ribosomal_S2 194 Nddsirsiklilgvladaieeg 215
                   Ndd+ir+i+l+l+++a+++ eg
    EHU02405.1 203 NDDAIRAINLYLTAVATTVREG 224
                   *****************99987 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.5e-05      0.31      19      52 ..      41      74 ..      32      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.5e-05
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrl 52
                i+ ++tv +f e++a+ Tki+++k ++lf g + 
  EHU02405.1 41 INLEKTVPMFNEALAELTKISSRKGKILFVGTKR 74
                68899************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2043.52
//
Query:       EHU02406.1  [L=283]
Description: protein chain elongation factor EF-Ts [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-65  220.3   3.9      2e-65  220.3   3.9    1.5  2  EF_TS          Elongation factor TS


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   3.9   1.1e-69     2e-65       1     208 []      71     263 ..      71     263 .. 0.98
   2 ?   -3.3   0.1      0.32   5.8e+03       8      15 ..     268     275 ..     267     280 .. 0.74

  Alignments for each domain:
  == domain 1  score: 220.3 bits;  conditional E-value: 1.1e-69
       EF_TS   1 avivevnsETDFVAknekFqelvkkvaeaaleekakdleellalkledetveealkekiakigEkielrrfakleaekevvasYiHgngrigvlvaleg 99 
                 +vi+evn++TDFVAk+  Fq++++kv++aa++++++d+e+l+a      ++ee++ +++akigE+i++rr+a+le+  e ++sY+Hg  rigvlv+++g
  EHU02406.1  71 GVILEVNCQTDFVAKDGGFQAFADKVLDAAAANRITDVEALKA------QFEEERVALVAKIGENINIRRVAVLEG--EELGSYLHG-ARIGVLVSAKG 160
                 79***************************************95......6**************************..566******.9********** PP

       EF_TS 100 ksdealkelakqiAmhiaAmnPqylsedevdaevlekekeilkeqakeegkpekiiekiveGrlekflkevcLleQeyvkddkktVeqvlkeaskelkv 198
                 +++    +l+kqiAmh+aA++P++++ ++v+aev+eke +++ + a ++gkp++i+ek+veGr++kf  ev+L+ Q++v d+ ktV q+lke+++  +v
  EHU02406.1 161 ANE----DLIKQIAMHVAASKPEFVKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQAFVIDPAKTVGQALKEQGA--DV 253
                 *99....7***************************************************************************************..** PP

       EF_TS 199 vkfvrfevGe 208
                 ++f+rfevGe
  EHU02406.1 254 INFIRFEVGE 263
                 *********8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.32
       EF_TS   8 sETDFVAk 15 
                  ETDF A 
  EHU02406.1 268 VETDFAAE 275
                 59999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2177.67
//
Query:       EHU02407.1  [L=241]
Description: uridylate kinase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-27   95.3   0.3    4.8e-27   95.1   0.3    1.1  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.3   2.7e-31   4.8e-27       2     241 .]      11     219 ..      10     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 2.7e-31
                 EEEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   2 rvVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaalla 95 
                 r+ +Kl G +l  +e+     ++l+r+a+++++l+e g+++ vV+Ggg+  +g   +++g+++                    d +++l++ ++   ++
  EHU02407.1  11 RILLKLSGEALQGAEGfgidaSVLDRMAQEVKELVELGIQVGVVIGGGNLFRGAGLAQAGMNRVVG-----------------DHMGMLATVMNGLAMR 92 
                 899*********99999*******************************999888888556666665.................9*************** PP

                 TTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCC CS
   AA_kinase  96 aglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvp 194
                  +l+   ++a+ + a+      + +g++ +++ ++   ll ++ v++++ +    ++    ++++D +a+l + +++Ad ++ +t VdGVy+adp k+p
  EHU02407.1  93 DALHRAYVNARLMSAI------PLNGVCDNYSWAEAISLLRNNRVVIFSAGT--GNP----FFTTDSAACLRGIEIEADVVLKATKVDGVYSADPVKHP 179
                 ***********99976......4688******99999999998888887744..344....99************************************ PP

                 TTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 195 darllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvItn 241
                 da+l++++++ e+++          kv+++aa+ +ar ++ p++++n
  EHU02407.1 180 DATLYEKLTYAEVLD-------QELKVMDLAAFTLARDHKLPIRVFN 219
                 ***************.......***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1847.75
//
Query:       EHU02408.1  [L=185]
Description: ribosome recycling factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-62  210.8   0.7    1.5e-62  210.3   0.7    1.2  1  RRF       Ribosome recycling factor


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.7   8.6e-67   1.5e-62       1     162 []      20     183 ..      20     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 8.6e-67
                 HHHHHHHSS-SSSSCGGGTTSEEEETTEEEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHHSCC-SEEEEESSEEEEE--SSSHHHHHHHHHHHH CS
         RRF   1 lkkelsklrtgranpslldnikVeyygkktpLnqlAqvsvkeartllitpfdkslvkaiekaIlksdlglnpqqdgevlrvpipplTeErrkelvkeak 99 
                 +k+ +sk+rtgra+pslld i Veyyg++tpL+qlA+v+v+++rtl i++fd+sl  a+ekaI++sdlglnp++ g+ +rvp+p lTeErrk+l+k ++
  EHU02408.1  20 FKTTISKVRTGRASPSLLDGIIVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSLGPAVEKAIMASDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVR 118
                 68899********************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHH.C.S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
         RRF 100 kaaekakvairniRrdankklkklek.k.iseDdvkkaekeiqkltdkyikeidellkakekell 162
                  +ae+ +v++rn+Rrdan+k+k+l k k iseDd+++a++eiqk+td +ik++d++l++ke el+
  EHU02408.1 119 GEAEQGRVSVRNVRRDANDKIKALLKdKeISEDDERRAQDEIQKMTDAHIKKVDAALAEKETELM 183
                 **************************659***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1444.28
//
Query:       EHU02409.1  [L=398]
Description: 1-deoxy-d-xylulose 5-phosphate reductoisomerase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-47  159.8   3.4    9.6e-47  158.9   3.4    1.5  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
    5.3e-41  139.5   1.7    5.4e-41  139.5   0.1    1.8  2  DXPR_C           DXP reductoisomerase C-terminal domain
    4.1e-37  126.2   0.0    8.9e-37  125.1   0.0    1.6  1  DXP_redisom_C    1-deoxy-D-xylulose 5-phosphate reductoisomer


Domain annotation for each model (and alignments):
>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   3.4   1.6e-50   9.6e-47       1     129 []       4     132 ..       4     132 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 1.6e-50
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCHTT-SEE CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkelaeeeeadvv 94 
                      +++LGsTGSIGt+tL v+++np  ++v+al+ag+nv+l+aeq+++f+p+++a+ade+aa++l+e+l++ +++tevl+G +a++ela+ +e+d v
       EHU02409.1   4 LTLLGSTGSIGTSTLAVVKANPALYQVTALVAGKNVALMAEQCAQFQPRYAAMADEDAAAALRERLRALKIRTEVLSGVQAACELAALDEVDQV 97 
                      589******************************************************************************************* PP

                      EE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH CS
  DXP_reductoisom  95 vaaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                      +aaivGa GL ptlaai+agk+++LANKEsLV++G
       EHU02409.1  98 MAAIVGASGLLPTLAAIRAGKTVLLANKESLVTCG 132
                      *********************************98 PP

>> DXPR_C  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.77   4.6e+03      40      67 ..      67      93 ..      39     100 .. 0.53
   2 !  139.5   0.1   9.1e-45   5.4e-41       1     114 [.     271     387 ..     271     388 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.77
                TTTCHHHHHHHHHHH-TCHHHHHHHHHH CS
      DXPR_C 40 erFpclklayealkaggtapavlnAAnE 67
                er ++lk+  e+l+ g +a++ l A +E
  EHU02409.1 67 ERLRALKIRTEVLS-GVQAACELAALDE 93
                33344444444444.3344444444444 PP

  == domain 2  score: 139.5 bits;  conditional E-value: 9.1e-45
                 E-SS-THHHHHHHHHTTS-...------HHHHEEEEEB---TTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTSS-TTHHHHHHHHHHHTTT. CS
      DXPR_C   1 LgtpDMrlpIayaLayper...gverldlaklgsltFekpdlerFpclklayealkaggtapavlnAAnEvaveaFlegkisFldIaeiieevleseek 96 
                 Lg+pDMr+pIa+++a+p r   gv++ld++++++ltF++pd+ r+pclkla++a++ag++a+++lnAAnE+av+aFl+++i+F+dIa+++++vl+ ++ 
  EHU02409.1 271 LGSPDMRTPIAHSMAWPARieaGVTPLDFTRMSALTFSAPDFGRYPCLKLAIDACEAGQAATTTLNAANEIAVAAFLDKQIRFTDIAALNSAVLSAHHC 369
                 89*****************8755************************************************************************9999 PP

                 ...SSHHHHHHHHHHHHH CS
      DXPR_C  97 seaksledileldaeare 114
                 +e++s+++++++d+ ar+
  EHU02409.1 370 QEPDSVDAVIDIDRSARA 387
                 ****************97 PP

>> DXP_redisom_C  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   1.5e-40   8.9e-37       1      84 []     146     239 ..     146     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 1.5e-40
                    EEE-SHHHHHHHHHS..........GCCCCTTEEEEEEEE--GTTTTS-HHHHCT-SHHHHHS-SS----HHHHHHHHHSHHHHHHHHHHHHHC CS
  DXP_redisom_C   1 ilpvDsEhsaifqll..........keekkkevekiiltasGGpfrklkleeleevtveealkhPnWsmGkkitvdsatlmNkglEvieakllf 84 
                    +lpvDsEh+aifq+l          ++ +++ +e+iilt sGGpfr+++l++l+++++++a++hPnW+mG+ki+vdsat+mNkglE+iea++lf
     EHU02409.1 146 LLPVDSEHNAIFQSLpasiqhqlgyADLQNNGIESIILTGSGGPFRDTNLADLSNMSPDQACAHPNWTMGRKISVDSATMMNKGLEYIEARWLF 239
                    69*************99888888775556699*************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3205.92
//
Query:       EHU02410.1  [L=250]
Description: undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-77  259.2   0.1    3.4e-77  259.0   0.1    1.0  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.0   0.1   1.9e-81   3.4e-77       1     224 []      23     243 ..      23     243 .. 0.95

  Alignments for each domain:
  == domain 1  score: 259.0 bits;  conditional E-value: 1.9e-81
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGS-H CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellkeellkeelkellkegvrvrviGdlellpe 97 
                   imDGN+RwAk++g + r +GhkaG++++++ ++++++ + +++t+YafS+eN++R+++ev+almel+   +l++e+k+l+k++vr+r+iGd++++++
    EHU02410.1  23 IMDGNGRWAKNQG-KLRISGHKAGVKSVRRAVSFAVNNNLEALTLYAFSSENWSRPAQEVTALMELFVW-ALDSEVKSLHKHNVRLRIIGDISRFSP 117
                   9************.77888************************************************65.899************************ PP

                   HHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTTT-E CS
  Prenyltransf  98 dvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqlayse 193
                   +++e++++ae+ t+ nn++l+lnia nYg+r++i+e v++l+++++e   + ++i+ee l+++l + ++l ++Dl+iRt+Ge+R+SnFllwq+ay+e
    EHU02410.1 118 RIQERVRRAEALTE-NNDRLTLNIAANYGGRWDIIEGVKKLAEQVQEGLLRpDQITEESLTSQLCM-NQLAPVDLVIRTGGEHRISNFLLWQIAYAE 212
                   **************.7777**********************998866655557789*********8.556*************************** PP

                   EEEESSSGGG--HHHHHHHHHHHHHCHHHTT CS
  Prenyltransf 194 lyfldvlWPdfskedllealleyqkrerrfg 224
                   +yf+dvlWPdf+++ +  al  ++ rerrfg
    EHU02410.1 213 FYFTDVLWPDFDEHVFEGALNAFSLRERRFG 243
                   *****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1930.81
//
Query:       EHU02411.1  [L=285]
Description: CDP-diglyceride synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-70  236.4  16.9    5.7e-70  236.1  16.9    1.0  1  CTP_transf_1  Cytidylyltransferase family
  ------ inclusion threshold ------
      0.017   15.1   0.2      0.017   15.1   0.2    2.0  3  CarS-like     CDP-archaeol synthase


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.1  16.9   6.3e-74   5.7e-70       1     263 [.       3     278 ..       3     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 236.1 bits;  conditional E-value: 6.3e-74
                   HHHHHHHHHHHHHHHHTTTSH..HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH.......HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHH CS
  CTP_transf_1   1 kqRvitalvlilivliilllgg.lvflllvavvvilalkElirlvrlkkrekrllll....llslvlllllllflylesliallklvlllvlvllll 92 
                   k R+ital+li++v+++l+  + + f+++++++ +la++E+ +l+  ++r++r+ l+    l+  ++ll+l+ + +   l +  + ++ +++ ++  
    EHU02411.1   3 KSRLITALILIPLVIAALFWLPpVGFAIVTIIICMLAAWEWGQLSGMASRQQRIWLAvicgLVLTLMLLTLPPYEHNAYLPQVTGWLWASLAWWTGA 99 
                   57**********99988766665*************************9999998887553222222333333333333333333333333333333 PP

                   H---..............HHHHHHHHHHHHHHHHHTHHHH.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TTS---BHHHHHH CS
  CTP_transf_1  93 vlkvl...........kskskklervilallallyvvlllqslllienikeglllvllllalvvaaDigaYffGklfGktkllpkiSPkKTveGfig 178
                    l  +           +s+  +l   +l+++++++ ++ l+ +++ ++++ g++++l++++lv+ aD+gaY+fGklfG++kl+pk+SP+KT+eGf+g
    EHU02411.1 100 LLL-VlfypasatlwrHSRLLRLLFGVLTIIPFFWGMMALRQYHYESDHFAGAWWLLFVMFLVWGADSGAYMFGKLFGRHKLAPKVSPGKTWEGFLG 195
                   332.25789999***999******************************************************************************* PP

                   HHHHHHHHHHHHHHHHHCTS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 179 GlvaavvvglllalvlskalalsllhllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylll 263
                   Glv+++++++l+a++++ +  + + +l++ +++ +l++v+GDL+eS++KR++giKDsG+liPGhGGilDR+Dsl++a+pv++ ll
    EHU02411.1 196 GLVSSALIAVLFASFAPLT--IPTGTLVMCAVISTLASVLGDLTESMFKREAGIKDSGNLIPGHGGILDRIDSLTAAVPVFACLL 278
                   *****************96..89999999****************************************************9887 PP

>> CarS-like  CDP-archaeol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   2.1         2   1.8e+04     133     152 ..      15      34 ..       6      41 .. 0.39
   2 ?   -3.4   0.2      0.92   8.2e+03       4      20 ..      64      80 ..      57      82 .. 0.66
   3 ?   15.1   0.2   1.9e-06     0.017      45     133 ..     185     271 ..     165     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 2
   CarS-like 133 lllaypvkllpieliilivl 152
                 l++a  + l p+ + i+ ++
  EHU02411.1  15 LVIAALFWLPPVGFAIVTII 34 
                 33333322222222222222 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.92
   CarS-like  4 lilksiylllpayvana 20
                l+l+ + l lp y  na
  EHU02411.1 64 LVLTLMLLTLPPYEHNA 80
                56666677777777665 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.9e-06
   CarS-like  45 GdGvtyrGtvaGvlvGvlvgliqglleklsilaldssgsvlefvilalllafGallGdavGsfikrrlki.erGkpal....ildqldfvlgal 133
                   G+t+ G+++G+++  l++++   +   + l++ +       v+ a++ ++ ++lGd++ s+ kr  +i + G+ ++    ild++d + +a+
  EHU02411.1 185 SPGKTWEGFLGGLVSSALIAVLFASF---APLTIPT----GTLVMCAVISTLASVLGDLTESMFKREAGIkDSGNLIPghggILDRIDSLTAAV 271
                 579**********9999998876665...4455543....344555666667899************998345665544455777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 2371.28
//
Query:       EHU02412.1  [L=449]
Description: inner membrane zinc RIP metalloprotease [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-86  287.2   0.2    1.1e-85  286.9   0.2    1.0  1  Peptidase_M50   Peptidase family M50
    7.2e-14   51.4   1.4    1.2e-10   41.0   0.1    2.7  2  PDZ_6           PDZ domain
    4.9e-13   49.2   0.2    5.4e-10   39.5   0.0    2.3  2  PDZ_2           PDZ domain
    4.1e-10   39.9   0.2    5.3e-07   29.9   0.0    2.3  2  PDZ             PDZ domain
      1e-05   25.4   0.3      0.021   14.7   0.1    2.7  2  Tricorn_PDZ     Tricorn protease PDZ domain
     0.0024   18.2   0.0     0.0047   17.3   0.0    1.4  1  GRASP55_65      GRASP55/65 PDZ-like domain
  ------ inclusion threshold ------
      0.028   14.1   0.4      0.028   14.1   0.4    2.4  3  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.9   0.2   4.2e-89   1.1e-85       1     250 []      10     437 ..      10     437 .. 0.91

  Alignments for each domain:
  == domain 1  score: 286.9 bits;  conditional E-value: 4.2e-89
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   1 afilllgilvvvHElGHflvAklcgvkveefsigfGpkllsfk.kgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGp 95 
                    afi++lgil++vHE+GHf+vA +cgv+ve+fsigfG+ l++++ +++te+ +al+pLGGyVkm +e+ e+ ++e +++af++k +wqr+ i++AGp
     EHU02412.1  10 AFIIALGILITVHEFGHFWVALRCGVRVERFSIGFGKALWQRRdRHGTEFVLALIPLGGYVKMLDERVESVPAELRHQAFNNKAIWQRASIIAAGP 105
                    69********************************************************************************************** PP

                    XXXXXXXXXXXXX................................................................................... CS
                    xxxxxxxxxxxxx................................................................................... RF
  Peptidase_M50  96 lanfilailvfvv................................................................................... 108
                    +anf++ai++++v                                                                                   
     EHU02412.1 106 VANFLFAIFAYWVvfihgvpgvkpvvgeilngsvaaeaqitpgtelkavdgietpdweavrmalvgkigdssttltvgrfgeqgtqqkhvdlrnwq 201
                    **********************************************************************************99999999999988 PP

                    .......................................................................................-EEECECTT CS
                    .......................................................................................xxxxxxxxx RF
  Peptidase_M50 109 .......................................................................................pkkskesee 117
                                                                                                           p  +++  +
     EHU02412.1 202 fepdkqdpvvalgirprgpqiettlaevqknspaseaglqagdrivkvdgqlltqwqlfatqvrdnpgksmalevdrngeavkltltP--EAKPGN 295
                    8888888888888888888888888877777777777777777777777777777777777777777777777777666666665443..233566 PP

                    TSCEE-SEEEC-.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 118 ekrgviGvspkp.........vkkegllealkegvektlkvvvltvkalgklitgklslktlggpisiaqlaseaaeaglssflqllalisvnLgi 204
                    + +g+ Gv p +         v+++g++ a+ e+  kt+++++ltv++lgklitg+++l++l+gpisiaq a+ +ae g++++l +lalisvnLgi
     EHU02412.1 296 KAEGFAGVIPRVvplpdeyktVRQYGAFPAIGEASVKTWQLMKLTVSMLGKLITGDVKLNNLSGPISIAQGAGLSAEYGMIYYLMFLALISVNLGI 391
                    666777777777************************************************************************************ PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 205 lNLlPipvLDGghllfalleairrkplserkeevanlvglalllll 250
                    +NL+P+pvLDGghllf ++e+i++ p+s r++++ +++g +ll++l
     EHU02412.1 392 INLFPLPVLDGGHLLFLAIEKIKGGPVSDRVQDFSYRIGSILLVML 437
                    ******************************************9986 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2   0.00057       1.5       1      54 [.     130     182 ..     130     184 .. 0.79
   2 !   41.0   0.1   4.7e-14   1.2e-10       4      54 ..     228     276 ..     226     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00057
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvv 54 
                 vV ++  gs+A++A + +G  + +v+G+++   + + v+ +l    +++s++l+v
  EHU02412.1 130 VVGEILNGSVAAEAQITPGTELKAVDGIET--PDWEAVRMALVgKIGDSSTTLTV 182
                 5888999***********************..55555555555456777777776 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 4.7e-14
       PDZ_6   4 aVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54 
                 +V+++sPA +AGl++GD+i++v+Gq +++++   +a  +r ++g+s+ l+v
  EHU02412.1 228 EVQKNSPASEAGLQAGDRIVKVDGQLLTQWQ--LFATQVRDNPGKSMALEV 276
                 79*************************5555..555666666666666666 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0     0.002       5.1      17      75 ..     130     188 ..     125     197 .. 0.85
   2 !   39.5   0.0   2.1e-13   5.4e-10       3      80 ..     213     287 ..     211     288 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
                 EEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEE CS
       PDZ_2  17 lvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkk 75 
                 +v ++ +g+ aa+a++ +g ++ +vdg +  + e ++ +l +k  ++  +ltv R g++
  EHU02412.1 130 VVGEILNGSVAAEAQITPGTELKAVDGIETPDWEAVRMALVGKIGDSSTTLTVGRFGEQ 188
                 5667888999********************9999999999999999999****995554 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 2.1e-13
                 ..XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvev 80 
                 lG++ +  +   + + ++V++++Pa++agl+agD+i+kvdg+ + ++++l     +  pG+   l+v R+g+  ++++
  EHU02412.1 213 LGIRPRGPQI--ETTLAEVQKNSPASEAGLQAGDRIVKVDGQLL-TQWQLFATQVRDNPGKSMALEVDRNGEAVKLTL 287
                 7777777777..88889***************************.99999999999***************9988876 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0015       3.8      28      67 ..     129     168 ..     121     183 .. 0.77
   2 !   29.9   0.0   2.1e-10   5.3e-07      13      81 ..     214     276 ..     203     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0015
                 EEEEEECTT.SHHHHHTSSTTEEEEEETTEETTTSHHHHHH CS
         PDZ  28 ifvsevlpg.gaaeadglkvGDkIlsvNgvdvenvsheeav 67 
                  +v e+l g  aaea+ + +G ++ +v+g  + +++  + +
  EHU02412.1 129 PVVGEILNGsVAAEAQ-ITPGTELKAVDGIETPDWEAVRMA 168
                 5899*****9999999.************999999554443 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 2.1e-10
                 SEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  13 GfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 G++ +g +      +   +ev+++++a  +gl++GD+I++v+g+ ++++ ++ a q+  +++++++L++
  EHU02412.1 214 GIRPRGPQI-----ETTLAEVQKNSPASEAGLQAGDRIVKVDGQLLTQW-QLFATQVRDNPGKSMALEV 276
                 555555443.....78999*****9999999******************.7888888888888888876 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0011       2.9      39      80 ..     144     186 ..     140     195 .. 0.83
   2 !   14.7   0.1   8.4e-06     0.021      28      81 ..     230     281 ..     222     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
                  --.TT-EEEEETTEE-BTTB-HHHHHHTTTT.SEEEEEEE-ST CS
  Tricorn_PDZ  39 nvreGdlilavdgepvskekgiaelLvgkag.keveLtvkrkd 80 
                  ++  G  ++avdg ++   + +  +Lvgk g ++++Ltv r +
   EHU02412.1 144 QITPGTELKAVDGIETPDWEAVRMALVGKIGdSSTTLTVGRFG 186
                  56789***********************976478999998754 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.4e-06
                  S-B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT CS
  Tricorn_PDZ  28 earSPLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdg 81 
                  +++SP +e G++  +Gd i++vdg+ +++ + +a    ++ gk++ L+v r+++
   EHU02412.1 230 QKNSPASEAGLQ--AGDRIVKVDGQLLTQWQLFATQVRDNPGKSMALEVDRNGE 281
                  689********9..8**********************************99654 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-06    0.0047      48     120 ..     227     296 ..     213     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.8e-06
                 EEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSS CS
  GRASP55_65  48 ldvlegsPaakagLvpksDYiiGldkgllkgeedlselveaheekelkLlvYnsesdevrevtvkpsrewGge 120
                  +v+++sPa++agL++  D i+ +d +ll++ + + + v+++  k++ L v + + ++v + t++p+ + G++
  EHU02412.1 227 AEVQKNSPASEAGLQA-GDRIVKVDGQLLTQWQLFATQVRDNPGKSMALEV-DRNGEAV-KLTLTPEAKPGNK 296
                 589***********86.79***************************99998.4444444.4566677777776 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.1e-05     0.028      21      50 ..      15      44 ..       1      71 [. 0.69
   2 ?   -2.1   0.2      0.95   2.4e+03      65      89 ..      96     120 ..      91     124 .. 0.72
   3 ?   -1.6   0.4      0.71   1.8e+03      97     138 ..     377     418 ..     362     443 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
  Peptidase_M50B 21 kllvvffHElGHalaalLtGgrvkgielhs 50
                      + + +HE+GH  +al +G rv+++++  
      EHU02412.1 15 LGILITVHEFGHFWVALRCGVRVERFSIGF 44
                    4556789******************99854 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.95
  Peptidase_M50B  65 gqiltllaGYlgpallGlllillsa 89 
                     +++ +++aG+++  l+ +++ ++ +
      EHU02412.1  96 QRASIIAAGPVANFLFAIFAYWVVF 120
                     5566788888888888877777654 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.71
  Peptidase_M50B  97 lvllvllllvllllvrnlfglvlllllgallllvlllaedel 138
                       l++l+l+++ l + nlf+l +l +  +l+l++ +++  ++
      EHU02412.1 377 YYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPV 418
                     346777778888888888888888777777777777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3509.32
//
Query:       EHU02413.1  [L=803]
Description: outer membrane beta-barrel protein assembly factor [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.9e-101  337.8  16.1   1.6e-100  336.7  16.1    1.5  1  Bac_surface_Ag  Surface antigen
      1e-60  202.3  10.5    5.5e-15   55.7   0.1    5.3  5  POTRA           Surface antigen variable number repeat
    2.1e-06   27.4   0.7       0.73    9.7   0.0    5.1  4  POTRA_2         POTRA domain, ShlB-type
    1.2e-05   25.5   0.8       0.15   12.4   0.0    4.6  5  POTRA_1         POTRA domain, FtsQ-type
  ------ inclusion threshold ------
      0.033   13.0   0.0      0.061   12.1   0.0    1.4  1  BatD            Oxygen tolerance
       0.15   11.9   0.0       0.29   11.0   0.0    1.4  1  DAO_C           C-terminal domain of alpha-glycerophosphate o
       0.22   10.3   0.7       0.65    8.8   0.0    2.0  3  YqfD            Putative stage IV sporulation protein YqfD


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.7  16.1  6.3e-104  1.6e-100       1     324 []     448     803 .]     448     803 .] 0.96

  Alignments for each domain:
  == domain 1  score: 336.7 bits;  conditional E-value: 6.3e-104
                     STSSSS-EEEEEEEESSSEEEEEEEEEESTSSTTS-EEEEEEEEEE..GGGTBS.S-EEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEES---B CS
  Bac_surface_Ag   1 NllGtGqslslsaslgsyeqslnlsftePyflgdrvslglslfare..sdsdesdsyrtksvgfsvslgrpltenyslslglsvqknkilkdsss 93 
                     N+lGtG+ +++s+++++y++ +++s+t+Pyf+ d+vslg+ +f+++   ++ + + y++ s+g++ +lg+p++en+sl +gl++++n++++++++
      EHU02413.1 448 NWLGTGNTVGISGTKNDYQTYAEFSLTDPYFTVDGVSLGGRVFYNNfkASDADLSGYTNRSYGTDGTLGFPINENNSLRVGLGYVHNDLSDMRPQ 542
                     9**********************************************96666667**************************************** PP

                     HHHHHHHH....S...CS--EEEEEEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEEE CS
  Bac_surface_Ag  94 ennrnvss....a...sklqtgksltsslslslsydtrddalfPtrGvllklrleftgpllggdvsylkldakasyyvpltkekdlvlaarvalg 181
                      +++++      +   + ++++  ++++++++++y+t+d+++f t+G++++l+ ++t+  +g+d++++k++ + ++yvp++k++ +v++ r+++g
      EHU02413.1 543 VAMWRYLDsvgkPqqlNRNGDFSADDFTFNYGWTYNTLDRGFFATSGNRTNLNGKVTI--PGSDNEFYKVTLDSQQYVPINKDHTWVVLGRGRVG 635
                     *****999766516689999**************************************..*********************************** PP

                     EEEESSSS-.--GGG-B-BSSTTSSTEE-TT-BS-EEE...................EEEE--BSEEEEEEEEEEEE-SSS-..GGTTEEEEEEE CS
  Bac_surface_Ag 182 yisgygtkdelpfyerFyaGGsnsvRGfesgglgprde...................sgdalGGdsyavaslElrfplpflk..kqnsvrlalFf 255
                     y++g+g+k+ +pfye+FyaGGs++vRGf+s+++gp++                    s+da+GG+++a aslEl++p+pfl+  ++nsvr++lF+
      EHU02413.1 636 YGDGLGGKE-MPFYENFYAGGSSTVRGFQSNTIGPKAAylndgssycnlsdpngickSSDAVGGNAMAIASLELITPTPFLSekYSNSVRTSLFV 729
                     *********.************************************************************************988899******* PP

                     EEEEEE-TT--TTTTTTS--TT......TS-EEEEEEEEEEEETTEEEEEEEEEEEE-STT--EESEEEEECEEE CS
  Bac_surface_Ag 256 DaGnvwdkegqspsssrsasst......aeirasvGvgLrwqsPlGPlrfdyAiplkkedgdktqrFqFgiGttF 324
                     DaG+vwd+++q++  +r a         ++ir+s+Gv+L+w+sPlGPl+f+yA p+kk dgdk ++FqF+iG+t+
      EHU02413.1 730 DAGTVWDTKWQNTAETR-AAGIpdysdpNNIRVSTGVSLQWMSPLGPLVFSYAQPVKKVDGDKSEQFQFNIGKTW 803
                     *************9777.4445899************************************************98 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.1e-06      0.01       2      80 .]      25      91 ..      24      91 .. 0.91
   2 !   42.9   0.1   2.2e-14   5.6e-11       1      80 []      92     172 ..      92     172 .. 0.94
   3 !   55.7   0.1   2.1e-18   5.5e-15       2      80 .]     176     263 ..     175     263 .. 0.96
   4 !   37.2   0.0   1.3e-12   3.3e-09       1      80 []     266     344 ..     266     344 .. 0.94
   5 !   53.7   0.2   8.9e-18   2.3e-14       1      80 []     347     421 ..     347     421 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.1e-06
                EEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA  2 kikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdEg 80
                ++k+i+feG ++++    +  ++++ gd+ n ++++++++     + ++G f+ +Vqv l    + ++   l++ v+E+
  EHU02413.1 25 VVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDDDVRNTIR----SLFATGNFE-DVQV-L---RDGNT---LIVQVKER 91
                79*******99***99999999******************....*********.**99.4...56666...99999995 PP

  == domain 2  score: 42.9 bits;  conditional E-value: 2.2e-14
                 EEEEEEEEES.SSS-HHHHHTTT...SSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE.EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrel...elkegdvynpekleadkealksryanlGyfdasV.qvelpeddedknrvdltinvdEg 80 
                 ++i++i+f+Gnk++kd++l++ l   +++ g+ +++ +++  ++ l+++y++ G ++asV  v +   + ++nrvdl+++++Eg
  EHU02413.1  92 PTIASITFSGNKAVKDDQLKQNLeasGVRLGEALDRTTISSIEKGLEDFYYSVGKYTASVkAVVT---PLPRNRVDLKLVFTEG 172
                 689********************88778********************************85555...8**************8 PP

  == domain 3  score: 55.7 bits;  conditional E-value: 2.1e-18
                 EEEEEEEES.SSS-HHHHHTTTSSSTT.........SBHCHHHHHHHHHHHHHHHHCTT-EE.EE...EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   2 kikkinfeGnkktkdeelrrelelkeg.........dvynpekleadkealksryanlGyfdasV...qvelpeddedknrvdltinvdEg 80 
                 ki++in++Gnk+++ +el ++++l+           ++y ++kl  d+e+l+s+y+++Gy+ +++   qv+l    +dk+ +++t+n++Eg
  EHU02413.1 176 KIQQINIVGNKAFSSDELISRFQLRDEvpwwnvvadRKYQKQKLAGDLETLRSFYLDRGYARFNIdstQVSL---APDKKGIYITVNITEG 263
                 89**********************999999999999**********************************99...99999**********8 PP

  == domain 4  score: 37.2 bits;  conditional E-value: 1.3e-12
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE..EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasV..qvelpeddedknrvdltinvdEg 80 
                 +ki+ + ++G  +    e++ + ++  g++yn +k++  ++++k+++++ Gy+ ++V  q+e+   ++  ++v+l invd g
  EHU02413.1 266 YKIAGVIVNGSMAGHSAEIEHLTKIPAGELYNGAKVTSMEDDIKKLLGRYGYAYPRVvtQPEI---NDADKTVKLHINVDAG 344
                 79999*****99*********************************************777777...999999*******976 PP

  == domain 5  score: 53.7 bits;  conditional E-value: 8.9e-18
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdEg 80 
                 ++++k++feGn   kd +lrre++  eg ++ ++ +++ ke    r++++Gyf+ +V+v+++  ++ +++vd++++v+E+
  EHU02413.1 347 YYVRKVRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKE----RLNRTGYFE-TVDVDTQRVPGSPDQVDVVYKVKER 421
                 89*********9999999***********************....*********.9*888844455556666******96 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0024       6.2       3      59 ..      94     153 ..      93     172 .. 0.82
   2 ?    1.6   0.1     0.095   2.4e+02       3      19 ..     177     193 ..     175     263 .. 0.56
   3 !    9.7   0.0   0.00029      0.73       3      73 ..     268     339 ..     266     341 .. 0.91
   4 ?    2.7   0.0     0.043   1.1e+02       3      34 ..     349     380 ..     348     392 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
                 .SEEEEESGCCSSHCCHHHHHCCC...SSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEE CS
     POTRA_2   3 ikkielegntllsleeleallqpy...lgkclgladlnqlakeltnayiekGYvtsrvll 59 
                 i +i + gn+++++++l++ l++    lg+ l+ + ++ + k l+++y++ G  t+ v +
  EHU02413.1  94 IASITFSGNKAVKDDQLKQNLEASgvrLGEALDRTTISSIEKGLEDFYYSVGKYTASVKA 153
                 7899*************99988744449***********************988887765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.095
                 .SEEEEESGCCSSHCCH CS
     POTRA_2   3 ikkielegntllsleel 19 
                 i++i++ gn+++s +el
  EHU02413.1 177 IQQINIVGNKAFSSDEL 193
                 56666666555555544 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00029
                 .SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEEEEC.CEETTEEEEEE CS
     POTRA_2   3 ikkielegntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrvllppq.dlesGtlklkV 73 
                 i ++ + g+ + + +e+e+l++   g+  + a ++ + +++ +++   GY   rv+ +p+ + ++ t+kl +
  EHU02413.1 268 IAGVIVNGSMAGHSAEIEHLTKIPAGELYNGAKVTSMEDDIKKLLGRYGYAYPRVVTQPEiNDADKTVKLHI 339
                 77899999999**********************************************665488999999876 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.043
                 .SEEEEESGCCSSHCCHHHHHCCCSSSEEEHH CS
     POTRA_2   3 ikkielegntllsleeleallqpylgkclgla 34 
                 ++k+++egn+  +++ l++ +++++g  lg+ 
  EHU02413.1 349 VRKVRFEGNDTSKDAVLRREMRQMEGAWLGSD 380
                 789**********************9988765 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.64   1.6e+03      60      69 .]      82      91 ..      73      91 .. 0.88
   2 !    5.7   0.0    0.0074        19       3      26 ..      94     117 ..      93     144 .. 0.73
   3 !   12.4   0.0   5.7e-05      0.15       2      35 ..     176     209 ..     175     224 .. 0.88
   4 ?    1.0   0.0      0.21   5.4e+02       2      46 ..     267     311 ..     266     313 .. 0.91
   5 ?   -2.7   0.0       2.9   7.5e+03       3      23 ..     349     369 ..     349     381 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.64
                TEEEEEEEC- CS
     POTRA_1 60 ntleitveEr 69
                ntl ++v+Er
  EHU02413.1 82 NTLIVQVKER 91
                8********9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0074
                 X-EEEEES-SS--HHHHHHHHHTT CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgie 26 
                 i+++++sGnk ++++++++ l+ +
  EHU02413.1  94 IASITFSGNKAVKDDQLKQNLEAS 117
                 789**************9876544 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 5.7e-05
                 XX-EEEEES-SS--HHHHHHHHHTTSTT-GGGS- CS
     POTRA_1   2 pikqvevsGnkhlsseeiikalgiekgtslfsld 35 
                 +i+q++++Gnk  ss+e+i   ++ ++ +++ + 
  EHU02413.1 176 KIQQINIVGNKAFSSDELISRFQLRDEVPWWNVV 209
                 79************************99999764 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.21
                 XX-EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH- CS
     POTRA_1   2 pikqvevsGnkhlsseeiikalgiekgtslfsldleaieqrlekl 46 
                 +i+ v v+G     s+ei+   +i  g+ + + ++  +e+ ++kl
  EHU02413.1 267 KIAGVIVNGSMAGHSAEIEHLTKIPAGELYNGAKVTSMEDDIKKL 311
                 678899**********************99999999999999985 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.9
                 X-EEEEES-SS--HHHHHHHH CS
     POTRA_1   3 ikqvevsGnkhlsseeiikal 23 
                 +++v+++Gn + +++ +++++
  EHU02413.1 349 VRKVRFEGNDTSKDAVLRREM 369
                 689999999887777777665 PP

>> BatD  Oxygen tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05     0.061     229     291 ..      55     128 ..      37     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
        BatD 229 rd..........fngggyrevkkrvsspavtitVkplPaeglPadFsg..avgsfslsaslskdelkvgepltlt 291
                 +d          f +g+ ++v++ +  +++ ++Vk+ P+  +   Fsg  av++ +l+++l+++ ++ ge+l +t
  EHU02413.1  55 NDddvrntirslFATGNFEDVQVLRDGNTLIVQVKERPT-IASITFSGnkAVKDDQLKQNLEASGVRLGEALDRT 128
                 322344457778888899********************9.88888*987799********************998 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.29      29     107 ..     304     381 ..     285     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                 -HHHHHHHHHHHGGGHHHHHHHHHHTH...HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HHHH-HHHHHHH CS
       DAO_C  29 deevaehLaerYGsraeevlelakedekpelaerlspelpyieaevvYavrhEmartlvDvlaRRtrlafldadaalea 107
                  e+ +++L+ rYG  +++v++  +  ++ +++ +l+ + +      v  vr E   t  D ++RR    ++ a  + ++
  EHU02413.1 304 MEDDIKKLLGRYGYAYPRVVTQPE-INDADKTVKLHINVDAGNRYYVRKVRFEGNDTSKDAVLRREMRQMEGAWLGSDL 381
                 56889**************94444.444566777777777777777777889*************98888777666665 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.17   4.2e+02     126     173 ..      46      92 ..       3      97 .. 0.58
   2 ?    8.8   0.0   0.00025      0.65     103     147 ..      94     138 ..      92     144 .. 0.92
   3 ?   -4.1   0.1       2.1   5.4e+03     100     121 ..     174     195 ..     173     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.17
        YqfD 126 eGikpGalkksidleeiekklleklpe..iaWvgveikGtrlivevveke 173
                 + +++G     ++ +++++ +++ +     + v+v ++G +liv+v+e+ 
  EHU02413.1  46 MPVRVGDT---VNDDDVRNTIRSLFATgnFEDVQVLRDGNTLIVQVKERP 92 
                 55555543...344444444544444322666889999*********995 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00025
        YqfD 103 iwsievegnekvseeeilkaleeeGikpGalkksidleeiekkll 147
                 i si+ +gn+ v+++++ + le  G++ G    +  ++ iek l+
  EHU02413.1  94 IASITFSGNKAVKDDQLKQNLEASGVRLGEALDRTTISSIEKGLE 138
                 779******************************999999999886 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 2.1
        YqfD 100 Ssfiwsievegnekvseeeilk 121
                 S  i +i++ gn+  s++e+++
  EHU02413.1 174 SAKIQQINIVGNKAFSSDELIS 195
                 566889**********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5426.67
//
Query:       EHU02414.1  [L=166]
Description: outer membrane protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-30  106.5  17.9    1.6e-30  106.3  17.9    1.0  1  OmpH        Outer membrane protein (OmpH-like)
     0.0027   18.0  12.8      0.034   14.5   2.0    2.6  3  TrbI_Ftype  Type-F conjugative transfer system protein (TrbI_
     0.0033   16.8  10.2     0.0041   16.6  10.2    1.3  1  DUF3552     Domain of unknown function (DUF3552)
  ------ inclusion threshold ------
      0.097   12.5   7.9       0.12   12.2   7.9    1.2  1  PIN_8       PIN like domain
        1.8    7.8   7.5        2.1    7.5   7.5    1.2  1  TMPIT       TMPIT-like protein
          2    8.9  17.7        2.4    8.6  17.3    1.3  1  T3SSipB     Type III cell invasion protein SipB
        4.4    7.7   8.4        4.9    7.5   3.5    2.9  4  YnfE        Uncharacterized YnfE-like


Domain annotation for each model (and alignments):
>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3  17.9   6.2e-34   1.6e-30       1     137 [.      25     164 ..      25     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 6.2e-34
                 TEEEE-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS....-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH   1 kiavvdvqkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e..keekeqelqkkeqelqqkqqqkaqelqkkqqellkpild 96 
                 k+a+vd+ +++++sp++ a+ +qle++f+ +++el+++ +++q+++++lq++a+++ +  +++ke++++ +++++q+k+++ +++ q +q ++++++l+
  EHU02414.1  25 KVATVDLSQVFQKSPQRAAISKQLESEFQGRATELRSQHDKIQQEMQDLQRNAPTMkAseRNKKEKQIESERNAFQAKADAFEKDNQTRQVQERNKLLE 123
                 89*****************************************************977999999999**********555555**************** PP

                 HHHHHHHHHHHHTT-SEEEE.GGG-S--.-GGGB-HHHHHHH CS
        OmpH  97 kinkaikevakekgydlvldsrgavlya.ddklDiTdeVlkk 137
                 ki++a++ vak  gydlvl+ ++avly+ +d +DiTdeV k+
  EHU02414.1 124 KIQTAVQSVAKSGGYDLVLN-SQAVLYSgSDVKDITDEVAKQ 164
                 ********************.9*****************997 PP

>> TrbI_Ftype  Type-F conjugative transfer system protein (TrbI_Ftype)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   1.4   0.00033      0.85       7      75 ..       4      72 ..       1      80 [. 0.84
   2 ?    1.1   0.7      0.19     5e+02      45      68 ..      82     105 ..      77     118 .. 0.74
   3 !   14.5   2.0   1.3e-05     0.034      44     102 ..     101     165 ..      97     166 .] 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00033
  TrbI_Ftype  7 vvaalllgawvsklvltltkpeiVtvdlketvdeFvqaeArkklteeqvealtrrFnkaleaslqelqk 75
                +++a++lg++++++   +  ++++tvdl+++  +  q +A +k+ e++ + ++    +  ++  qe+q 
  EHU02414.1  4 LLCAVTLGVALAASAGAQAADKVATVDLSQVFQKSPQRAAISKQLESEFQGRATELRSQHDKIQQEMQD 72
                6899********99999999********************99999999988877777666666555554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.19
  TrbI_Ftype  45 eArkklteeqvealtrrFnkalea 68 
                 +++++ +e+q+e + ++F++ ++a
  EHU02414.1  82 ASERNKKEKQIESERNAFQAKADA 105
                 567778899999999999988776 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.3e-05
  TrbI_Ftype  44 aeArkklteeqvea..ltrrFnkaleaslqelqkqkg.aivLvaeaVv.ag..apDiTdevradi 102
                 a+A +  + +q+++  + ++ ++ +++++q ++k+ g  +vL ++aV+ +g  ++DiTdev +++
  EHU02414.1 101 AKADAFEKDNQTRQvqERNKLLEKIQTAVQSVAKSGGyDLVLNSQAVLySGsdVKDITDEVAKQV 165
                 555555555565541156778999*********9665469*******9644679*******9877 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  10.2   1.6e-06    0.0041      64     151 ..      43     133 ..      13     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
     DUF3552  64 klreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeele.....elveeqrqeLerisgLtkeeA 151
                  + ++le+e++ r +el+++ ++++q  + L+r   +++  e+  ++kek+++++++  ++k +  e     + v+e+++ Le+i    +  A
  EHU02414.1  43 AISKQLESEFQGRATELRSQHDKIQQEMQDLQRNAPTMKASER--NKKEKQIESERNAFQAKADAFEkdnqtRQVQERNKLLEKIQTAVQSVA 133
                 56689****************************8888877666..355556666666555554444311111457788888888866555555 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.9   4.8e-05      0.12      19     137 ..      27     148 ..      22     166 .] 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
       PIN_8  19 trkdllkvlekladrlwvPhqvalEfqrnresvis...kekkayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeelkael 114
                 ++ dl +v++k  +r  ++ q  +Efq + ++++s   k ++ ++dl+++   +k+++ +k e+ ++++++  + +++ ++k+ ++   + +++l ++ 
  EHU02414.1  27 ATVDLSQVFQKSPQRAAISKQLESEFQGRATELRSqhdKIQQEMQDLQRNAPTMKASERNKKEKQIESERNAFQAKADAFEKDNQTRQVQERNKLLEKI 125
                 5668899999999**************777777762224444455555555555555555555555555555555566666666665555555555555 PP

       PIN_8 115 eelkksskadkeedpilkkleel 137
                 +++ +s+ ++   d +l+  + l
  EHU02414.1 126 QTAVQSVAKSGGYDLVLNSQAVL 148
                 66666666665566666655555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.5   0.00083       2.1       6      84 ..      51     131 ..      28     148 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00083
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk....eeeeeeveelkeelkerkkvlke 84 
                 e++ ++ el++++++++q++++l++   +++ +++++k+  k+++s+ + ++++++    +++ ++v+e ++ l+++++ +++
  EHU02414.1  51 EFQGRATELRSQHDKIQQEMQDLQRNAPTMKASERNKKE--KQIESERNAFQAKADafekDNQTRQVQERNKLLEKIQTAVQS 131
                 556666677777777777777777766666555444333..333333333333322222233344444444445555544444 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  17.3   0.00094       2.4      33     136 ..      20     124 ..       9     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00094
                 HHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------..CHHHHHHHHH..HHHHHHHHHHHHHHHH CS
     T3SSipB  33 mskaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePeka..kleaaeqQagaaadalqadealqKklda 129
                  + a + a   lS+++q+  + a+  ++   + + +a ++ s+ d+ ++ +++ q+    ++  e +k+  ++e +++  +a+ada ++d++ ++++  
  EHU02414.1  20 AQAADKVATVDLSQVFQKSPQRAAISKQLESEFQGRATELRSQHDKIQQEMQDLQRNAPTMKASERNKKekQIESERNAFQAKADAFEKDNQ-TRQVQE 117
                 5677888999*************999999999*****************************9998887611456666777777******994.455555 PP

                 HHHHHHH CS
     T3SSipB 130 asklsek 136
                  +kl ek
  EHU02414.1 118 RNKLLEK 124
                 5555554 PP

>> YnfE  Uncharacterized YnfE-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.4   1.1e+04      64      76 ..      22      34 ..      16      36 .. 0.53
   2 ?    5.1   0.1     0.011        28      20      46 ..      50      76 ..      44      79 .. 0.89
   3 ?    7.5   3.5    0.0019       4.9       2      37 ..      65     100 ..      64     118 .. 0.82
   4 ?    1.5   0.1      0.15   3.8e+02      27      64 ..     113     150 ..     101     160 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
        YnfE 64 AagDlsleeLeev 76
                Aa  ++  +L +v
  EHU02414.1 22 AADKVATVDLSQV 34
                3444444555555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
        YnfE 20 pDYeGkeeDlekqkeqlelYekqLkqe 46
                ++++G+  +l+ q++++ +  + L+++
  EHU02414.1 50 SEFQGRATELRSQHDKIQQEMQDLQRN 76
                6899****************9999986 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0019
        YnfE   2 iLrqYvelvkknietinapDYeGkeeDlekqkeqle 37 
                  ++q ++ +++n  t++a++ + ke+ +e  ++   
  EHU02414.1  65 KIQQEMQDLQRNAPTMKASERNKKEKQIESERNAFQ 100
                 67899999*********************9987665 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.15
        YnfE  27 eDlekqkeqlelYekqLkqesssdedfDevvda.vvkcA 64 
                 + +++++  le+ +  ++   +   ++D v ++ +v + 
  EHU02414.1 113 RQVQERNKLLEKIQTAVQ-SVAKSGGYDLVLNSqAVLYS 150
                 445555555666555544.55666789988886345554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3578  (0.199565); expected 358.6 (0.02)
Passed bias filter:                      942  (0.0525406); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1234.19
//
Query:       EHU02415.1  [L=341]
Description: UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-31  104.9  32.6    1.4e-09   37.3   0.9    5.6  6  Hexapep      Bacterial transferase hexapeptide (six repeats)
    8.6e-22   76.7   0.1    1.4e-21   76.0   0.1    1.3  1  LpxD         UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acylt
    4.2e-11   42.4  36.2    1.8e-07   30.8   4.2    5.6  4  Hexapep_2    Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
      0.074   13.4   1.1       0.61   10.5   0.1    2.8  3  GTP_EFTU_D2  Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.9   3.2e-13   1.4e-09       1      36 []     109     144 ..     100     144 .. 0.96
   2 !   32.3   0.3   1.1e-11   5.1e-08       2      35 ..     146     179 ..     145     180 .. 0.96
   3 !   14.2   0.3     6e-06     0.027      18      35 ..     199     216 ..     198     217 .. 0.91
   4 !   28.6   6.4   1.7e-10   7.7e-07       1      34 [.     222     255 ..     222     257 .. 0.93
   5 !    9.3   1.4   0.00021      0.93      13      36 .]     252     275 ..     250     275 .. 0.84
   6 !    9.5   0.5   0.00018      0.82       2      26 ..     259     283 ..     258     286 .. 0.66

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.2e-13
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 s+++G nv +g++avi ++V++Gdnv+Igag+ +g+
  EHU02415.1 109 SARLGANVSVGANAVIESDVELGDNVVIGAGCFVGK 144
                 5789*****************************986 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 1.1e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 t+IGs++ +++++ +++ V+IG ++ I +g+vig
  EHU02415.1 146 TRIGSGTRLWANVSVYHEVVIGQHCLIQSGTVIG 179
                 89*******************************8 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 6e-06
                 TTEEE-TTEEEETTEEEE CS
     Hexapep  18 gnVkIGdnvkIgagvvig 35 
                 g V+IGd+v Iga+++i 
  EHU02415.1 199 GSVIIGDRVEIGACTTID 216
                 78**************96 PP

  == domain 4  score: 28.6 bits;  conditional E-value: 1.7e-10
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +t IG++v+I++ ++i++nV+IGdn+ ++ gv  
  EHU02415.1 222 NTLIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIM 255
                 688***************************9976 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00021
                 TEEEETTEEE-TTEEEETTEEEES CS
     Hexapep  13 faviggnVkIGdnvkIgagvvigg 36 
                 +++ +g  kIG+++ Ig  +vi+g
  EHU02415.1 252 GVIMAGSLKIGRYCMIGGASVING 275
                 567778889********9999986 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00018
                 EEEETTEEE-TTEEEETTEEE-TTE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnv 26 
                 ++IG  ++Ig  +vi g+ +I d v
  EHU02415.1 259 LKIGRYCMIGGASVINGHMEICDKV 283
                 6777777777777777766666655 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.1   3.1e-25   1.4e-21       1      70 []      22      89 ..      22      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 3.1e-25
                T-EEEEEE-CCC--TTCEEEE-SCCCGGGCCC---SEEEEEHHHHCCHTTSCS.EESS-HHHHHHHHHHH CS
        LpxD  1 dleItgvapleeAgpgdlsFlanpkylkqlattkAgavivppdlaealpanaalivvenPylafakllql 70
                d+ I+g+a++++A+ g+++Flan++y++qla  +A+av+++++++e ++++a  +vv+nPyl++a+++ql
  EHU02415.1 22 DIAISGIASMQSATTGQITFLANSRYREQLALVQASAVVLTEADLEWCKTAA--LVVKNPYLTYARMAQL 89
                689*********************************************9998..**************96 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   4.2   3.9e-11   1.8e-07       4      34 .]     112     144 ..     110     144 .. 0.93
   2 !    9.3   0.0   0.00021      0.94       2      33 ..     146     179 ..     145     180 .. 0.86
   3 ?   -2.2  14.7      0.82   3.7e+03       2      31 ..     201     242 ..     200     255 .. 0.71
   4 !   11.2   0.4   5.4e-05      0.24       2      26 ..     259     285 ..     258     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.9e-11
                 E-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   4 IGdnCliGanagi..GvslGdncvvgaGvvita 34 
                  G+n+ +Gana+i   v+lGdn+v+gaG+++ +
  EHU02415.1 112 LGANVSVGANAVIesDVELGDNVVIGAGCFVGK 144
                 69**********9999*************9975 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00021
                 EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 ++IG  + + an  +   v +G  c +++G vi 
  EHU02415.1 146 TRIGSGTRLWANVSVyhEVVIGQHCLIQSGTVIG 179
                 689999999999666679*************995 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.82
                 EEE-TT-EE-TT-EE............SEEE-TT-EE-TT-E CS
   Hexapep_2   2 viIGdnCliGanagi............GvslGdncvvgaGvv 31 
                 viIGd++ iGa  +i            Gv++ + c ++ +vv
  EHU02415.1 201 VIIGDRVEIGACTTIdrgaldntlignGVIIDNQCQIAHNVV 242
                 89*********9999885554444444455555555555555 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 5.4e-05
                 EEE-TT-EE-TT-EE.S.EEE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanagi.G.vslGdncvv 26 
                 ++IG  C+iG  ++i G  +++d+++v
  EHU02415.1 259 LKIGRYCMIGGASVInGhMEICDKVTV 285
                 69*************999******998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.35   1.5e+03      14      37 ..     129     150 ..     127     174 .. 0.60
   2 ?   -1.1   0.0      0.57   2.6e+03      55      71 ..     190     205 ..     189     209 .. 0.87
   3 ?   10.5   0.1   0.00014      0.61       3      48 ..     249     298 ..     247     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.35
                  ETTEEEEEEC.TCTTSEEEEEEEEE CS
  GTP_EFTU_D2  14 kkGdevrilg.ndtskkeivtriss 37 
                  + Gd+v+i+    ++kk   tri+s
   EHU02415.1 129 ELGDNVVIGAgCFVGKK---TRIGS 150
                  56888888776667777...77765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.57
                  EEEEEESSCCSGSSTTC CS
  GTP_EFTU_D2  55 GvivaikgledaiivGd 71 
                  G++v+i+ l + +i+Gd
   EHU02415.1 190 GNWVKIPQLGS-VIIGD 205
                  89999999999.99998 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00014
                  EEEEEEEESEEETTEEEEEECTCTTSEE....EEEEEEEEEEETEEESEE CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilgndtskke....ivtrissletfhededea 48 
                  va+g+++ G lk G + +i+g ++   +     +++++++ + + + +e+
   EHU02415.1 249 VAGGVIMAGSLKIGRYCMIGGASVINGHmeicDKVTVTGMGMVMRPITEP 298
                  99*****************9966666668999999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2451.54
//
Query:       EHU02416.1  [L=151]
Description: (3R)-hydroxymyristol acyl carrier protein dehydratase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-40  138.5   0.0    1.2e-40  138.3   0.0    1.0  1  FabA             FabA-like domain
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.033   14.5   0.0    1.5  1  4HBT             Thioesterase superfamily
       0.02   14.4   0.0      0.028   14.0   0.0    1.3  1  MaoC_dehydratas  MaoC like domain
       0.04   13.1   0.0      0.046   13.0   0.0    1.2  1  PS-DH            Polyketide synthase dehydratase


Domain annotation for each model (and alignments):
>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0   2.7e-44   1.2e-40       1     137 [.      17     141 ..      17     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 2.7e-44
                 ---TT.T---SEEEEEESTCTCTSS.EEEEEEE--TTSHHHHHSSTTS----HHHHHHHHHHHHHHHHHHCC---SCCEEE-EEEEEEECEEEE-S--- CS
        FabA   1 lpark.lllldrvleieeeggkfgkGlivaekdvtpnewfFqgHFpgdPvmPGvLgleamaQlvgfyllksggdegkgrarklvlfagvdevkfrgqvt 98 
                 lp+r+ +ll+drvl++e e++      ++a k+v++ne+fFqgHFpg+P++PGvL+leamaQ++g++++ks g+ + g   +l++fag+d+++f+++v+
  EHU02416.1  17 LPHRYpFLLVDRVLDFE-ENKY-----LRAVKNVSFNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPG---ELYYFAGIDNARFKRPVV 106
                 8****************.6666.....********************************************9988888...899*************** PP

                 TT-.EEEEEEEEEEEEECCTCEEEEEEEEEETTEEEEEE CS
        FabA  99 Pgdkklvleveikkvseekrviiiadaellvdgklvyea 137
                 Pgd ++++ev+++k    +r+++ +++ ++vdgk+v+ea
  EHU02416.1 107 PGD-QMIMEVTFEK---TRRGLTRFNGVATVDGKIVCEA 141
                 ***.**********...********************98 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   7.5e-06     0.033       7      61 ..      64     122 ..      60     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.5e-06
                 HHHHHHHHHHHHHHHHHTTST....TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEES CS
        4HBT   7 GvylallDeaagaalrslggr....gilvvvvelsidflrpvrlgdeltvearvlrlgr 61 
                   +l+++ +a g+++++  g+    +  +++  ++++f+rpv +gd   +e++ +++ r
  EHU02416.1  64 VLILEAMAQATGILAFKSVGKlepgELYYFAGIDNARFKRPVVPGDQMIMEVTFEKTRR 122
                 45688888888888888888889*99999************************999988 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.3e-06     0.028      74     114 ..      90     130 ..      50     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.3e-06
                      EGGGEEEEEEEE-S--BTTCEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas  74 vvarvgeikvrFtkpVlpgdtlkvelevvgkrdvrktkkve 114
                         + g++++rF +pV pgd++ +e++ +  r++ +  ++ 
       EHU02416.1  90 LYYFAGIDNARFKRPVVPGDQMIMEVTFEKTRRGLTRFNGV 130
                      5668899*****************99988877776555555 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.046      29      91 ..      50     121 ..      25     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
                 TTTSEEETTEEB--TTHHHHHHHHHHHHTS---...........-EEEEEEEE----.B--SS.-EEEEEEEEE CS
       PS-DH  29 wLrDHrvdgkvvlPgagylemaleAarqltges..........kavelrdvsilkalvlpede.pvevqlslep 91 
                 + + H   gk+++Pg+  le++++A   l+ +s              + + ++++++ +p d+  +ev+++ ++
  EHU02416.1  50 FFQGH-FPGKPIFPGVLILEAMAQATGILAFKSvgklepgelyYFAGIDNARFKRPV-VPGDQmIMEVTFEKTR 121
                 66666.579****************99999555555566656666677899999999.5544435666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1163.54
//
Query:       EHU02417.1  [L=262]
Description: UDP-N-acetylglucosamine acyltransferase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-29  101.1   0.0    5.2e-29  100.5   0.0    1.3  1  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
    7.6e-26   88.8  26.1    3.9e-08   32.7   5.1    6.2  5  Hexapep          Bacterial transferase hexapeptide (six repea
     0.0012   17.9   0.6      0.094   11.6   0.0    2.1  2  Fucokinase       L-fucokinase
  ------ inclusion threshold ------
      0.028   14.2   1.6      0.028   14.2   1.6    5.1  5  Hexapep_2        Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   1.2e-32   5.2e-29       1      82 []     180     261 ..     180     261 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.2e-32
                      BB-TTEEEETTTTEEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHHHHHHHH-SS-B- CS
  Acetyltransf_11   1 DVpPfvlvagnparlrglNlvgLkRrgfseeeikalkkayrllyrsglsleealeeleeeaeespevqelldFieaskRGii 82 
                      DVpP+v+++gn+a+++g+N++gLkRrgfs+e ++a+++ay+llyrsg +l+e   e+e+ a++++evq + dF+++s+RG+i
       EHU02417.1 180 DVPPYVIAQGNHATPFGINIEGLKRRGFSKESLHAIRNAYKLLYRSGRTLDEVKPEIEAIAQQHSEVQPFYDFFARSTRGLI 261
                      9*******************************************************************************86 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.6   2.9e-07    0.0013       9      35 ..       1      27 [.       1      27 [. 0.84
   2 !   32.7   5.1   8.8e-12   3.9e-08       1      36 []      17      52 ..      17      52 .. 0.96
   3 !   14.6   0.0   4.5e-06      0.02       2      35 ..      66      99 ..      53     100 .. 0.83
   4 !   32.0   2.3   1.4e-11   6.4e-08       2      36 .]     109     143 ..     109     143 .. 0.97
   5 !   13.2   1.6   1.2e-05     0.055       7      36 .]     144     173 ..     141     179 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.9e-07
                EE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  9 lIgpfaviggnVkIGdnvkIgagvvig 35
                +I+p a i++  +I d+++Ig+gv ig
  EHU02417.1  1 MIDPTANIHPSSVIEDGAIIGPGVHIG 27
                588899999999999999999999886 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 8.8e-12
                TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep  1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36
                +++IG +v+Igpf+ ig+nV+IG+++++ ++vv++g
  EHU02417.1 17 GAIIGPGVHIGPFCFIGANVEIGEGTVLKSHVVVNG 52
                589*******************************86 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 4.5e-06
                EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                + IG+ ++  ++a     V+IGd+ +I + v+i+
  EHU02417.1 66 ASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIH 99
                45777777777*********************97 PP

  == domain 4  score: 32.0 bits;  conditional E-value: 1.4e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 tv+Gs++l++ +++i+++++IG++++ ++++++gg
  EHU02417.1 109 TVVGSDNLLMVNVHIAHDCVIGNRCIMANNATLGG 143
                 79******************************997 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 1.2e-05
                 TEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   7 nvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +v+++ fa+igg + ++  ++Iga+v +gg
  EHU02417.1 144 HVTVDDFAIIGGMTAVHQWCTIGAHVMVGG 173
                 666777777777777777777777776664 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   2.1e-05     0.094     281     349 ..       2      69 ..       1      86 [. 0.80
   2 !    4.7   0.2    0.0027        12     270     329 ..     108     170 ..      85     188 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
  Fucokinase 281 lessvsvgegsviehsslk.gnvsigsnsivsglelesseeslelpddtilqtlslklskekeyvtvvfG 349
                 +++++++ ++svie+  +  ++v+ig  +++ g ++e +e    l+++++++++    ++++ y +  +G
  EHU02417.1   2 IDPTANIHPSSVIEDGAIIgPGVHIGPFCFI-GANVEIGEG-TVLKSHVVVNGHTRIGKDNQIYQFASIG 69 
                 78999*********99987699*********.888877754.7899999999999999888876655544 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0027
  Fucokinase 270 k....kesavvinSvlessvsvgegsvie.hsslkgnvsigsnsivsglelesseeslelpddti 329
                      +++ +++n  +++++ +g+++++  + +l+g+v++    i+ g+   ++   +++  +++
  EHU02417.1 108 VtvvgSDNLLMVNVHIAHDCVIGNRCIMAnNATLGGHVTVDDFAIIGGMTAVHQ--WCTIGAHVM 170
                 134447888888999999999999998874677888999988888888877665..445655554 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0007       3.1      10      27 ..       8      27 ..       6      28 .. 0.56
   2 ?   14.2   1.6   6.3e-06     0.028       2      26 ..      24      50 ..      23      52 .. 0.85
   3 ?   -1.9   0.1      0.68   3.1e+03       4       7 ..      86      89 ..      83     110 .. 0.53
   4 ?    4.5   1.8    0.0065        29       2      17 ..     121     138 ..     120     155 .. 0.62
   5 ?    1.9   0.2     0.044     2e+02       3      16 ..     164     177 ..     163     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0007
                E-TT-EE..SEEE-TT-EE- CS
   Hexapep_2 10 iGanagi..GvslGdncvvg 27
                i+++++i  G ++G ++++g
  EHU02417.1  8 IHPSSVIedGAIIGPGVHIG 27
                66666655555555555554 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.3e-06
                EEE-TT-EE-TT-EE..SEEE-TT-EE CS
   Hexapep_2  2 viIGdnCliGanagi..GvslGdncvv 26
                v+IG  C+iGan +i  G+ l   +vv
  EHU02417.1 24 VHIGPFCFIGANVEIgeGTVLKSHVVV 50
                89************9778988777776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.68
                E-TT CS
   Hexapep_2  4 IGdn 7 
                IGd+
  EHU02417.1 86 IGDR 89
                4443 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0065
                 EEE-TT-EE-TT-EE..S CS
   Hexapep_2   2 viIGdnCliGanagi..G 17 
                 v+I  +C+iG ++++   
  EHU02417.1 121 VHIAHDCVIGNRCIManN 138
                 677778889888885441 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.044
                 EE-TT-EE-TT-EE CS
   Hexapep_2   3 iIGdnCliGanagi 16 
                 +IG+ +++G  +g+
  EHU02417.1 164 TIGAHVMVGGCSGV 177
                 69999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2041.34
//
Query:       EHU02418.1  [L=382]
Description: tetraacyldisaccharide-1-P synthase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.6e-145  482.7   0.0   7.4e-145  482.5   0.0    1.0  1  LpxB      Lipid-A-disaccharide synthetase


Domain annotation for each model (and alignments):
>> LpxB  Lipid-A-disaccharide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.5   0.0  4.1e-149  7.4e-145       1     374 []       8     376 ..       8     376 .. 0.99

  Alignments for each domain:
  == domain 1  score: 482.5 bits;  conditional E-value: 4.1e-149
                 EEEEE-SHHHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHTT-EEEEEGGGH------------HHHHHHHHHHHHHHHHH--SEEEEES-HHHHHHHH CS
        LpxB   1 iflsagevSgdllgaelikelkeeypelefvGvggekmeaeglealaemeeisvvGlievlkkllkllkirkkvvknllkkkadlliliDapdfnlrla 99 
                 i+++age+Sgd+lga+li++lk+  p+++fvGv+g+ m+aeg+ea++emee++v+G++evl++l++ll ir++++++++  k+d++++iDapdfn++l+
  EHU02418.1   8 IAVVAGETSGDILGAGLIRALKARHPDARFVGVAGPFMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLAIRRDLTQRFISLKPDVFVGIDAPDFNITLE 106
                 89************************************************************************************************* PP

                 HHHHHTT--..EEEES--TTT--SHHHHHHHHHH-SEEEESSHHHHHHHHHTT--EEE---HHHHHS-SS--HHHHHHHHT--TTS-EEEEE--SSHHH CS
        LpxB 100 kklrkqgikkkiiyyvsPsvWawkpkrakkiakytdlllaiLPfEkefyqkkgldvryvGHplldaikkekkeakakellgidedervlallpgsRkse 198
                  +l++ gi+  +i+yvsPsvWaw++kr++ki + tdl+la+LPfEk+fy+ +g+++r++GH+++da++ ++++a+a+  lgid+++++lallpgsR++e
  EHU02418.1 107 GNLKRAGIR--TIHYVSPSVWAWRQKRVFKIGRNTDLVLAFLPFEKAFYDRFGVPCRFIGHTMADAMPLQPDKAAARRHLGIDDNAQCLALLPGSRGAE 203
                 *********..9*************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHH-TT---EEEES-HHHHHHH-SEEEESSTTHHHHHHHTT--EEE-----HHHHHHH CS
        LpxB 199 irrllksllkaaqqlkkqlenlkllvplvnkkyeeqileikaeenldvqllllsgealealaaadlaliksGTaaLEaalaktPmvvayrvkpltffla 297
                 + +l++++lk+aq l+k ++ l+++vplvn+k++eq+++ika++++++ ++ll+g+ +ea++a+d+al++sGTaaLE++lak+Pmvv+yr+kp+tf+la
  EHU02418.1 204 VDMLSADFLKTAQILRKRYPALEIVVPLVNAKRREQFEQIKAQVAPELPVHLLDGQGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLA 302
                 *************************************************************************************************** PP

                 HHHHHHS--SHHHHHHTS-SS----GGG-SHHHHHHHHHHHHTTS...HHHHHHHHHHHHHHHHT-S-HHHHHHHHH CS
        LpxB 298 krlvkikyvslvNillnreivpeliqeesdaqleaaallllleneekakkekdkekkfeellreeeckakeqaakiv 374
                 krlvk++yvsl+N+l++re+v+el+q e++++ +aaal  ll  +   ++++   ++f+el+++++ +a+eqaa++v
  EHU02418.1 303 KRLVKTDYVSLPNLLAGRELVKELLQDECQPEALAAALDPLLHAS---HERETLLQTFHELHQQIRWNADEQAANAV 376
                 ******************************************999...88889999*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2833.44
//
Query:       EHU02419.1  [L=208]
Description: ribonuclease HII [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-38  132.3   0.0    2.2e-38  132.1   0.0    1.0  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.1   0.0   1.2e-42   2.2e-38       3     197 ..      15     189 ..      13     190 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.1 bits;  conditional E-value: 1.2e-42
                 EEEE-TT-SBS-EEEEEEEECGHHHHHHHCTTGTTGTTS-HHHHHHHHHHHHSEEEEEEE-HHHHH.HHTTTS-HHHHHHHHHHHHHHHHHHTCEECCE CS
   RNase_HII   3 iDEaGrGpvlGplvvaavavekereeelkklgvkDSKkLskqkreeLaklikkkiekrklvaeeikyaseneinlneikaaltlaviklleklgvkvde 101
                 +DE+GrGp++G +v aav++++++       g++DSKkLs+++r  L+ +ik     +++ a  + +a+ +ei++ +i +a++la++++++ l++ +d+
  EHU02419.1  15 VDEVGRGPLVGAVVTAAVILDPAKP----IPGLADSKKLSEKRRLALFDEIK-----EHALAWSLGRAEPEEIDSLNILHATMLAMQRAVAGLAITPDY 104
                 8*********************998....68*********************.....6666667888999***************************** PP

                 CCCE--SSHHHHHHHHHHHHCCEEEEETTGGGT-HHHHHHHHHHHHHHH.HHHHHHHHHCS.H.--TTSSTTSHHHHHHHHHHHHHS--TTB-TTSHH CS
   RNase_HII 102 ilvdgvttpeslkkkleqiikikvtvekkadekyllvaaASiiAkverd.eelellkrkpg.tldkgsGyasdektrallkkgatsklpdivrlsfkt 197
                 +l+dg++ p+ l+ +  +++k        +d++++ ++aASiiAkv+rd e+ el   +p+ ++++++Gy+++ ++++l ++gat+    ++r+sf+ 
  EHU02419.1 105 VLIDGNRCPA-LPVPSLAVVK--------GDSLVAEISAASIIAKVTRDrEMAELDLLFPQyGFAQHKGYPTALHIEKLTQYGATP----HHRRSFAP 189
                 *********9.9999999*99........********************99999999*****************************....******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1610.44
//
Query:       EHU02420.1  [L=1160]
Description: DNA polymerase III alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-105  349.8   0.0   2.1e-104  348.7   0.0    1.6  2  DNA_pol3_alpha   Bacterial DNA polymerase III alpha NTPase do
    5.6e-66  221.0   0.1    9.9e-66  220.2   0.1    1.4  1  DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit f
    5.3e-43  147.2   0.0    2.8e-42  144.9   0.0    2.1  2  PHP              PHP domain
    3.2e-25   88.2   0.0    8.3e-25   86.9   0.0    1.8  1  HHH_6            Helix-hairpin-helix motif
    8.7e-09   35.2   0.1    2.1e-08   34.1   0.1    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> DNA_pol3_alpha  Bacterial DNA polymerase III alpha NTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.7   0.0  5.9e-108  2.1e-104       3     260 .]     292     558 ..     290     558 .. 0.97
   2 ?   -3.3   0.0       1.5   5.3e+03     152     224 ..     699     772 ..     681     797 .. 0.56

  Alignments for each domain:
  == domain 1  score: 348.7 bits;  conditional E-value: 5.9e-108
                     HHHHHHHHHHHHS.........TT---TTHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT--B-S--GGGGG-HHHHHTTS----HHHHT- CS
  DNA_pol3_alpha   3 Lrklveeglkerl.........keelpeevkerlekElevIekmgfadyflivadlvkaakkkgilvGpgRGSaagslvayllgiTeidPlkydl 88 
                     L  + +egl+erl         ++e++ e+ erl+ El+vI++mgf++yfliv+++++++k++g++vGpgRGS+agslvay+l+iT++dPl++dl
      EHU02420.1 292 LVMKSREGLEERLamlfpdeavRAEKRPEYDERLDVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 386
                     5566788899998888888888888899******************************************************************* PP

                     -HHHHS-TTS-------EEEEGGGHHHHHHHHHHHH-TTTEEEEEEEEE--HHHHHHHHHHHH-GGHHHHHHHHHTS---SS--GGGG-----SH CS
  DNA_pol3_alpha  89 lFerFlnpervsmPDiDidfekerreevidyvkekyGkenvaqiitfgtlaakaairdvgralglplkevdklaklipkelgitlekaleeekel 183
                     lFerFlnpervsmPD+D+df++e+r++vi++v+++yG+e v+qiitfgt+aaka+irdvgr+lg p+  vd+++kl+p ++g+tl+ka+  e++l
      EHU02420.1 387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLDKAFAAEPQL 481
                     *********************************************************************************************** PP

                     HHHHHH-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GGGTS-EEE-TTT--EEESS-HHHHHTTT-EEEEEEE CS
  DNA_pol3_alpha 184 kelieedeevkrlvelakkleglkrntgqHaaGvvispkeltdlvPlqkaekeeevvtqfdmedledlgllKlDfLG 260
                      e++e+deevk l+++a+kleg++rn+g Ha+Gvvi+p+++td++Pl+++e+ + +vtqfd++d+e +gl+K+DfLG
      EHU02420.1 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLG 558
                     *************************************************888888*********************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
                     -GGHHHHHHHHHTS---SS...--GGGG-----SHHHHHHH-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-G CS
  DNA_pol3_alpha 152 glplkevdklaklipkelg...itlekaleeekelkelieedeevkrlvelakkleglkrntgqHaaGvvispkel 224
                     g++l  +d l +++ k++    ++ ++ ++e    +++  + e   ++++l++k+ g   n +  aa  ++s + l
      EHU02420.1 699 GYTLGGADMLRRAMGKKKPeemAKQRSVFKE--GAEKMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772
                     4555555555555555522121122222332..2333333556666777888888887777776666556655554 PP

>> DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.1   2.7e-69   9.9e-66       1     164 [.     561     733 ..     561     735 .. 0.96

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 2.7e-69
                      HHHHHHHHHHHHHHHH---....--GGG--S--HHHHHHHHHT--TTSTT--SHHHHHHHHHH---SHHHHHHHHHHSSHHHHHTTHHHHHHHH CS
  DNA_pol3_finger   1 tltiirralklikekkgke....idleeipleDkkvykllskgdtlGvfqlesrgmrqllkrlkPktfeDlvalvaLyRpgpvqggnvddyikr 90 
                      tltii++alk+i+ +++k+    id+++ipleDkk +++l++++t++vfqlesrgm++l+krlkP++feD++alvaL+Rpgp+q+g+vd++i+r
       EHU02420.1 561 TLTIIDWALKMINPRREKQglppIDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654
                      79**********99999955556*********************************************************************** PP

                      HTTSS----SSH.....HHTTTTTTTTT---BHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH CS
  DNA_pol3_finger  91 kngeekveyihp.....eleeiLketygvivyQEqvmqiaqvlagfslgeAdllrramgkkkeeeleklkekfiegake 164
                      k+g+e+++y++      +l+++L++tyg+i+yQEqvmqiaqvl+g++lg Ad+lrramgkkk+ee++k++  f ega++
       EHU02420.1 655 KHGREAISYPDIqwqheSLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFKEGAEK 733
                      ********998777788***********************************************************987 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   7.8e-46   2.8e-42       1     166 [.       8     172 ..       8     173 .. 0.97
   2 ?   -1.0   0.0      0.54   1.9e+03      71     139 ..     839     907 ..     742     921 .. 0.73

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 7.8e-46
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE..................E....EHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddsekerpshltllaknqeGyknllkllsk 99 
                 +lHvH++ys+ dg ++   l+kka++lg++aiaiTD  nl g v+fy  a   + agikpiiG++++va++   ++ +++t+la n++Gy+nl+ l+s+
  EHU02420.1   8 HLHVHSDYSMIDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGA---HGAGIKPIIGADFNVASELMGDELTQITVLAANNTGYQNLTLLISR 103
                 9*************************************************...899******************************************* PP

                 HHH...........HHHHHHS..................TTGGHHHHHHHHHHHHHHHC...T-EEEEEG CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
         PHP 100 aylegf.yrkpridkellekhsegLivlsgclkGevfealdlieveekaeealeelakif..gdyiEint 166
                 ay +g+  + p id+++l++ +egLi+lsg+++G+v++ l++++ +  + e+l +++++f  ++y+E+ +
  EHU02420.1 104 AYQRGYgVAGPIIDRDWLAELQEGLILLSGGRRGDVGRSLLRGNSAL-VSECLAFYQQHFadRYYLELVR 172
                 ******99******************************888887777.*******************965 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.54
                 .............E....E.HHHHHHHHHHHHH..........HHHHHH............S..................TT CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxx RF
         PHP  71 dsekerpshltllaknqeG.yknllkllskaylegfyrkpridkellek............hsegLivlsgclkGevfeald 139
                 +++ e p ++++ a+n+ G +++l++l+ +  +      ++i++ ++ek            h        ++l + +++al+
  EHU02420.1 839 KGVGEGPIEAIIDARNEGGyFRELFDLCARTDT------KKINRRVMEKlimsgafdrlgpH-------RAALMSALNDALK 907
                 333567777888888888877888888888777......44444444443334565555555.......4555555555554 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   2.3e-28   8.3e-25       1      89 [.     808     897 ..     808     898 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 2.3e-28
       HHH_6   1 gvevlppdvnrSeadftveeedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvds..lnkrqleaLakaGaldslglnRrq 89 
                 g++vlppd+n   ++f+v+ ++g+i++G +aikg+ge  +e+i+++R+++g f++l+dl+ r+d+  +n+r++e+L+ +Ga+d lg +R++
  EHU02420.1 808 GLKVLPPDINSGLYQFHVN-DEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTkkINRRVMEKLIMSGAFDRLGPHRAA 897
                 789***************8.7888*****************************************************************97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   5.8e-12   2.1e-08       2      75 ..    1000    1072 ..     996    1073 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 5.8e-12
                       EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC..TTSSEEEEEEEEEE CS
  tRNA_anti-codon    2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr..pggelelkveeiel 75  
                       ++a+rv+ +  + g+++   +l+D++gr++v+lf ++ +k+++ l+++ ++ v+G+v+++   gg l +++ e+ +
       EHU02420.1 1000 VIAARVMVT--KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDdfSGG-LKMTAREVMD 1072
                       478888888..************************************************988888.9999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 8777.21
//
Query:       EHU02421.1  [L=318]
Description: acetyl-CoA carboxylase, carboxytransferase, alpha subunit [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-62  208.5   0.1    5.9e-62  207.8   0.1    1.3  1  ACCA            Acetyl co-enzyme A carboxylase carboxyltransf
    2.1e-18   66.2   0.1    2.9e-18   65.8   0.1    1.1  1  Carboxyl_trans  Carboxyl transferase domain
     0.0012   18.4   0.0     0.0018   17.8   0.0    1.2  1  MdcE            Malonate decarboxylase gamma subunit (MdcE)


Domain annotation for each model (and alignments):
>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.8   0.1   9.9e-66   5.9e-62       1     144 []       5     150 ..       5     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 207.8 bits;  conditional E-value: 9.9e-66
        ACCA   1 lldfekpiaeleekieelkkl..aeesevdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRpktldyiealfedfvelhGDrafadDkAivgg 97 
                 +ldfe+piaele+ki++l+++  +++++v+l+ee+++l++k+ +l+++i+++l +wq  qlaRhp Rp+t dy+++ f+df el+GDra+adDkAivgg
  EHU02421.1   5 YLDFEQPIAELEAKIDSLTSIgrQDDKHVNLDEEVKRLREKSVELTRKIFADLGAWQIAQLARHPLRPYTFDYVRNAFDDFDELAGDRAYADDKAIVGG 103
                 69*****************99545558999********************************************************************* PP

        ACCA  98 larlegqpvmvigqqKGrdtkerlkrnfGmakPeGYrKAlrlmklAe 144
                 +arl+g+pvm+ig+qKGr+tke+++rnfGm+ PeGYrKAlrlm++Ae
  EHU02421.1 104 IARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAE 150
                 **********************************************8 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.1   4.8e-22   2.9e-18     256     464 ..      71     277 ..      44     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 4.8e-22
                     S---HHHHHHCEECTTC-EEESTTSS..TTEEEEEEEETTEEEEEEEE--S........EEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BS CS
  Carboxyl_trans 256 kpyDvreviarlvdegeFlEikegyA..ktvVvGfArlgGipvGvvAnetr........veaGqvlfidsavKaarfirlcdaenlPlviladvr 340
                     +py    v ++  d +e+ + +  yA  k +V G Arl+G+pv +++ ++          + G +  +++  Ka r +++ +++++P+++++d++
      EHU02421.1  71 RPYTFDYVRNAFDDFDELAG-DRAYAddKAIVGGIARLDGRPVMIIGHQKGretkekirRNFG-MPAPEGYRKALRLMEMAERFKMPIITFIDTP 163
                     55655555555555444443.334554467999****************999******99999.******************************* PP

                     EE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHHHHHHHH CS
  Carboxyl_trans 341 GflvGqrqeyggilkhGaklvdalaeakvPkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemerkdlaae 435
                     G  +G  +e+ g   ++a  + +++ +kvP+i  +++++  G+ ++++  +  +  +++   +  +V+ peg ++il++ +++a        aae
      EHU02421.1 164 GAYPGVGAEERGQSEAIARNLREMSGLKVPVICTVIGEGGSGGALAIGVGDKVN--MLQY--STYSVISPEGCASILWKSADKAPL------AAE 248
                     *************************************9999999***9998777..3333..56**************99977543......444 PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHTTSS CS
  Carboxyl_trans 436 rkkklkeyeeellnpyvaaargfaDavid 464
                     ++  ++ + +el  +   +a  +  a+  
      EHU02421.1 249 AMGITAPRLKELKLIDSVIAEPLGGAHRH 277
                     45555555555555555555555555555 PP

>> MdcE  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     3e-07    0.0018       4     180 ..      86     265 ..      83     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3e-07
                 HHHHS--TTS-TTEEEEEEEETTEEEEEEEE---TT........SS-B-H..HHHHHHHHHHHHHHTSSS--EEEEEEEE--B--SHHHHHHTHHHHHH CS
        MdcE   4 aaLfpdgsgiaaslkvldgsltlesvrfvaVigdan........kgevGv..dealaLaaaVleaieraekrpilvlvDvasQrlgrrdEllGiheala 92 
                 ++L++d+    a++k + g +   ++r+v++ig  +        + + G+   e+++ a +  e+  ++ k pi+  +D+++   g + E  G +ea+a
  EHU02421.1  86 DELAGDR--AYADDKAIVGGIARLDGRPVMIIGHQKgretkekiRRNFGMpaPEGYRKALRLMEMA-ERFKMPIITFIDTPGAYPGVGAEERGQSEAIA 181
                 5566554..334555566666666**********99999999998888873359999999999998.7889**************************99 PP

                 HHHHHHHHHHHHT--EEEEEEEEEEHHHHHHTTTT-SEEEEEET-EEESS-HHHHHHHHT--HHHHHHHGGCSGGG--SHHHHHTTT- CS
        MdcE  93 hlakalarArlaGhpvigllvGkavsGaflahglqanrlialpgvqvavmdkasaArvTkrsveaLealaksipvfAydvdnyarlGl 180
                      +        pvi  ++G+  sG+ la g   +++  l+  +  v+     A +  +s ++    a+++ + A+ ++++  +  
  EHU02421.1 182 RNLREMSGL---KVPVICTVIGEGGSGGALAIGV-GDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGITAPRLKELKLIDS 265
                 765544333...369******************7.57888899999999999999999999999988888888888888776654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2244.45
//
Query:       EHU02422.1  [L=718]
Description: lysine decarboxylase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-186  619.3   0.0   3.5e-186  619.0   0.0    1.1  1  OKR_DC_1    Orn/Lys/Arg decarboxylase, major domain
    1.3e-45  154.9   0.1    2.4e-45  154.1   0.1    1.5  1  OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
    1.6e-25   89.5   0.0    3.5e-25   88.4   0.0    1.6  1  OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  619.0   0.0  5.9e-190  3.5e-186       1     417 []     131     547 ..     131     547 .. 0.99

  Alignments for each domain:
  == domain 1  score: 619.0 bits;  conditional E-value: 5.9e-190
                 -HHHHHHHHHHHH---SSSSSTTTTTCGGGGSHHHHHHHHHH-HHHHHT---TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHH CS
    OKR_DC_1   1 pPlykaLvkyveegkvsfavPGHqgGavfkkePagrlfydffGenllraDlsievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvl 99 
                 pPl+kaL++yv+egk++f++PGH+ G++f+k+P+g+lfydffG n+l++D+si+v+eLg+Lldh+G++ ea++y+ar+fga++sy+v+nGTs+snk+v 
  EHU02422.1 131 PPLTKALFTYVKEGKYTFCTPGHMAGTAFQKSPVGCLFYDFFGANTLKSDISISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVG 229
                 8************************************************************************************************** PP

                 HHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTTGSESEEEEESS-TTSEEE-HHHHHHHHTTSES CS
    OKR_DC_1 100 navltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkefeeetlkekikevpdakaprlavitnsTYdGvlynakeivdkleklsd 198
                 ++++++g+++lvdRNcHKS++h+l++s+  Pv+l+p+rnalgi+ggi++kef+++++++k++++p a +p++avitnsTYdG+lyn++ i+++l++ s 
  EHU02422.1 230 MYAAPAGSTILVDRNCHKSLTHLLMMSDLIPVWLKPTRNALGILGGIPQKEFTRASIEQKVAATPRASWPVHAVITNSTYDGLLYNTQYIKQTLDVPS- 327
                 **************************************************************************************************. PP

                 EEEEE-TT-TTGGGSGGGTTSSSSSSS-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT--HHHHHHHHHHTS-SS--HHHHHHHHHHHHHHSHHHHH CS
    OKR_DC_1 199 rilfDeAwvgyeqfiplyadaskllaenendpgilvtqSvHKllaalsqaSlihvkeelivneerlneafmmhattSpsYpllAsldvaakmlegesgr 297
                  i+fD+Awv+y++f+p+y+++s++++e+  +++i++tqS+HKllaa+sqaSlih+k+e  ++e+++nea+mmh+ttSp Y+++ s+++aa+ml+g+ g+
  EHU02422.1 328 -IHFDSAWVPYTNFHPIYEGKSGMSGERIPGKVIYETQSTHKLLAAFSQASLIHIKGE--YDEQTFNEAYMMHTTTSPNYAIVSSIETAAAMLRGNPGK 423
                 .*********************************************************..8************************************** PP

                 HHHHHHHHHHHHHHHHHHH...HSSS---EESS-SEEESTSGEEE-TT.-TTT--TT--TTSEEE-TTEEEEE-SSB-TTSSB-SS---HHHHHHHHHH CS
    OKR_DC_1 298 rlleevveraielrkeikr...ldnaelikpvnpevvdekeffklepg.ekWhgfediadeqyflDPiKlliltPGidedGeleelGvpaaivakyLre 392
                 rl++++vera+++r+ei+r   +++++++++++pe+vde+++++++pg e Whgf +++ ++++lDPiK++iltPG++e Ge+ e+G+paa+vak+L+e
  EHU02422.1 424 RLINRSVERALHFRREIQRlreESDSWFFDIWQPEHVDEAQCWPIQPGdEAWHGFTQADRDHMYLDPIKVTILTPGMSELGEMAEEGIPAALVAKFLDE 522
                 *******************99999***********************8357************************************************ PP

                 TT---SEEESSEEEEE--TTS-HHH CS
    OKR_DC_1 393 ngivvektdlynilflltlgedktk 417
                 +givvekt++yn+lfl+++g+dktk
  EHU02422.1 523 RGIVVEKTGPYNLLFLFSIGIDKTK 547
                 **********************986 PP

>> OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.1     4e-49   2.4e-45       1     129 [.     572     700 ..     572     703 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 4e-49
                 SHHHHHHSHHHHTT-BHHHHHHHHHHHHHHHTHHHHHHHHCCS--EESS-HHHHHHHHHTT-EEEEEGGG-TTSBBSS-BEECTT-S-SB-TTEE--CC CS
  OKR_DC_1_C   1 lPelvkekperYegmtlrdLcqemhdlykeakvaelqkeafsklpepamtpaeayeelvrgevelvpldelegriaaelvlpyPpGipllvpGErlgee 99 
                 lP+l++e+p+ Y++m+++ L+q +h+l++++++ +l+ +af+ lpe++mtp++a+++ v+g++e+v+++el gri+a+++lpyPpG+pl++pGE+++e+
  EHU02422.1 572 LPDLYAEDPDFYRTMRIQTLAQGIHRLIQQHDLPRLMLKAFDVLPEMKMTPHQAFQQQVKGNIETVNMNELVGRISANMILPYPPGVPLVMPGEMITEQ 670
                 8************************************************************************************************** PP

                 CHHHHHHHHHHHHHCCCSTTS--EEETEEE CS
  OKR_DC_1_C 100 skaildYlkaleefdnkfPGFeteiqGvev 129
                 s+a+ld+l++l+++ +++PGFet+i+G + 
  EHU02422.1 671 SRAVLDFLLMLCSIGRHYPGFETDIHGATL 700
                 ***************************876 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   5.9e-29   3.5e-25       1     111 []      14     125 ..      14     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 5.9e-29
  OKR_DC_1_N   1 lkgaairelaealekegfevvgvtstdDllsvieqnsriaavvlsvd.deaaelldeirernedlPvFllaetrtsedvpadvlreidgfielledtpe 98 
                 +k++++rel  al+++gf+++++++tdDll++ie+n+ri++v++++d +++ el+ ei+++ne lP++++++t+++ d++ + +r   +f+e++++ ++
  EHU02422.1  14 YKDEPLRELDVALSQQGFQLIRPKNTDDLLKLIEHNPRISGVIFDWDeHNSPELCGEINQLNEYLPLYAFINTHSQMDISINEMRLPLHFFEYALNAAD 112
                 68999******************************************99999*********************************************** PP

  OKR_DC_1_N  99 fiarqieaaakkY 111
                 +ia +i + +++Y
  EHU02422.1 113 DIALHIRQYTDDY 125
                 **********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5284.33
//
Query:       EHU02423.1  [L=129]
Description: putative lyase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-18   66.3   0.0    3.2e-18   66.2   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.8e-11   44.3   0.0      2e-11   44.1   0.0    1.1  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    4.2e-06   27.0   0.0    5.2e-06   26.7   0.0    1.1  1  Glyoxalase_3  Glyoxalase-like domain
    4.4e-06   27.4   0.0    5.6e-06   27.1   0.0    1.1  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.026   14.5   0.0      0.039   13.9   0.0    1.3  1  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   8.9e-22   3.2e-18       2     128 .]       7     126 ..       6     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 8.9e-22
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 i+h+a++++d+ +s +FY+++LGf+l  +    e+ +++++    +g+  iel++++ p+ + ++      +  ++ ++a+ v dv++a+++l+ +gv 
  EHU02423.1   7 IHHIAIIASDYHRSKAFYCDILGFELQSEHY-REARDSWKGDLALNGQYTIELFSFPHPPARVSQP-----EACGLRHLAFGVPDVEAAVRYLDTQGVT 99 
                 9******************************.8999******************************.....69************************** PP

                 EEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGillei 128
                 + +++ +  +g+  +f f DpdG  le+
  EHU02423.1 100 CEPIRIDALTGKPCTF-FADPDGLPLEL 126
                 **************99.******99986 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   5.6e-15     2e-11       1      93 [.       8     100 ..       8     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 5.6e-15
                   EEEEEE-S-HHHHHHHHHH.TT-E.ESS--E.EETTTTEEEEEEEETTEEEEEEE.ESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvg.pwqryrdepqevdlafallgsgsvqieLie.plegpeflaehgeglhhlaywvddldaavarleeqGfev 93 
                   ++i+i+  D ++  a+++++lG++ ++++yr+   + + ++al+g+    ieL + p++ +   +    gl hla+ v d++aav+ l+ qG+++
    EHU02423.1   8 HHIAIIASDYHRSKAFYCDILGFElQSEHYREARDSWKGDLALNGQ--YTIELFSfPHPPARVSQPEACGLRHLAFGVPDVEAAVRYLDTQGVTC 100
                   8**********************977899****************9..69****868888888889**************************975 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.5e-09   5.2e-06       1     110 [.       7     106 ..       7     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.5e-09
  Glyoxalase_3   1 lDHvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgY.lElla.vdpeapaperprlfgldrlakgeglhtlalrtddidataarl 95 
                   ++H+ ++++d ++  a + + lGf+++     +   ++   + ++++Y +El++ ++p a+   +          ++ gl +la+ ++d++a+++ l
    EHU02423.1   7 IHHIAIIASDYHRSKAFYCDILGFELQSEHYREARDSWKGDLALNGQYtIELFSfPHPPARVS-Q---------PEACGLRHLAFGVPDVEAAVRYL 93 
                   69*********************************************77*****668888862.2.........2469******************* PP

  Glyoxalase_3  96 raaGvdeagrrvrpd 110
                   + +Gv+   +++r d
    EHU02423.1  94 DTQGVT--CEPIRID 106
                   ****86..5555555 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.6e-09   5.6e-06       2     105 ..      10     125 ..       9     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.6e-09
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgweveree.aaledpegvgpaaedaatllfqrvpe........paknr...vHldlavedldaevarlvalGArvlre 86 
                   +++ a+d ++  aF++++lg+e+++e+  +++d   + +a +++ t+ +   p         +        Hl + v+d++a+v+ l   G +    
    EHU02423.1  10 IAIIASDYHRSKAFYCDILGFELQSEHyREARDSWKGDLALNGQYTIELFSFPHpparvsqpE---AcglRHLAFGVPDVEAAVRYLDTQGVTCEPI 103
                   6777999********************744444444455667777777777777777765432...13348*************8888888877777 PP

  Glyoxalase_6  87 prdgthgr...vlaDPeGneFc 105
                     d  +g+    +aDP+G +  
    EHU02423.1 104 RIDALTGKpctFFADPDGLPLE 125
                   767666669999******8765 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.039       4     109 ..      10     122 ..       7     128 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                   ---EES-HHHHHHHHHHTT---EEEE-SSEE..EETTS-EEEEH.HHHHH----...---S..--SS-EEEEEES-HHHHHHHH..GGGS-EEEEEE CS
  Glyoxalase_2   4 illvvkdieeskkFYedvlelkikldfGenv..sfetgfalked.lkelinlde...siae..qsnnfeLyFevedvdaflqklkeaeniellhelk 92 
                   i +++ d ++sk FY d+l  +++ ++ +    s+++++al+ +   el ++++    + +       +L F v dv+a++  l  ++ +      +
    EHU02423.1  10 IAIIASDYHRSKAFYCDILGFELQSEHYREArdSWKGDLALNGQyTIELFSFPHppaRVSQpeACGLRHLAFGVPDVEAAVRYLDTQG-VTCEPIRI 105
                   668899********************98766337999999986625578877652213333212233578999999999999996665.66555555 PP

                   E-TTS-EEEEEE-TT-- CS
  Glyoxalase_2  93 ekpWgqrvirfyDpDkh 109
                       g+    f+DpD+ 
    EHU02423.1 106 DALTGKPCTFFADPDGL 122
                   56677788888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 959.40
//
Query:       EHU02424.1  [L=435]
Description: tRNA(Ile)-lysidine synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      6e-60  202.1   0.1      9e-60  201.5   0.1    1.3  1  ATP_bind_3  PP-loop family
    1.1e-22   79.2   0.1    2.6e-22   78.0   0.1    1.7  1  TilS_C      TilS substrate C-terminal domain
    1.2e-18   67.4   7.0    1.2e-18   67.4   7.0    4.0  3  TilS        TilS substrate binding domain
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.18   11.3   0.0    1.2  1  QueC        Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.5   0.1     2e-63     9e-60       2     181 ..      14     191 ..      13     192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.5 bits;  conditional E-value: 2e-63
                 EEEE--SCHHHHHHHHHHHHHCTTTTT.EEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--HHHCTTSTCCCHHHHHHHHHHHHCHHCCT.CE CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgi.klvaihvdhglreeskeeaelvkelckklnikleiekvdvakkkgknleeaARelRYevlkealkkegiev 99 
                 ++vA+SgGlDS++Ll+ l +++++    +l+a+hv+hgl+++++++a+++++lc++++i++ei +v+v  + g+++e+aAR++RY++l++al++   e 
  EHU02424.1  14 LVVAFSGGLDSTVLLHKLRDWQQHHPAsRLRALHVHHGLSANADHWAAHCQTLCATWQIPCEILRVQVTDQ-GDGIEAAARQARYRALHQALHAD--EK 109
                 68*******************9988777***************************************9765.********************888..** PP

                 EE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSHHHHHHH CS
  ATP_bind_3 100 lllAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkikwveDesNadekyeRnriRk 181
                 ll+A+h dDq+Et+ll+l+rgsg+agla+++ a ++ +  l+RPlL +s++ le y+++++++wveDesN+d +y+Rn++R+
  EHU02424.1 110 LLTAQHLDDQCETVLLALKRGSGPAGLAAMPVAGSLGKNPLLRPLLSCSRQSLELYAQTHQLQWVEDESNQDVRYDRNFLRQ 191
                 *********************************************************************************8 PP

>> TilS_C  TilS substrate C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   5.8e-26   2.6e-22       3      74 .]     358     427 ..     356     427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 5.8e-26
                 EEC-.TTSEEEBTTSSSEEEHHHHHHHCT--HHHCCCSEEEEETTEEEEETTTEEBCCCB-SSSSS-EEEEE CS
      TilS_C   3 vrfrrggerlqpagrggsrkLKklfqeagvPpwlRdriPLlfygdelvavaglgvsaafsaqkkeaglrlew 74 
                 vrf  + + ++++ r g+r+ Kk++q +++P+w+R+riPL++y+ +l++++gl+v+++++a+ +++g++++w
  EHU02424.1 358 VRFH-ATGYVHIVDRAGGREMKKIWQGLNIPSWQRERIPLIYYNQTLICAPGLFVTREGAAG-EAQGWQIHW 427
                 7777.78899************************************************9998.6889****9 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.4      0.14   6.3e+02      21      48 ..      45      71 ..      31      77 .. 0.77
   2 ?    2.8   0.4     0.037   1.7e+02      12      45 ..      94     126 ..      86     137 .. 0.78
   3 !   67.4   7.0   2.6e-22   1.2e-18       2      67 .]     241     307 ..     240     307 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
                HHHHTTTT--HHHHHHH.HHHHH.H-S- CS
        TilS 21 WLaqlglpmpsaahLeellrqlllaaed 48
                +L  ++ ++  a h++++ + l+ a ++
  EHU02424.1 45 ALHVHHGLSANADHWAAHCQTLC-ATWQ 71
                44455666899999999999999.7775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.037
                 HHHHHHHHHHHHHTTTT--HHHHHHH.HHHHH.H CS
        TilS  12 arqrrlLRrWLaqlglpmpsaahLeellrqllla 45 
                 + + r L+ +L +    +++a+hL++  + +lla
  EHU02424.1  94 QARYRALHQALHADEK-LLTAQHLDDQCETVLLA 126
                 5678999999999995.89*****9977777665 PP

  == domain 3  score: 67.4 bits;  conditional E-value: 2.6e-22
                 -HHHHHHS-HHHHHHHHHHHHHHTTTT--HHHHHHH.HHHHH.H-S-SEEEEE-ST.EEEEETTEEE CS
        TilS   2 siaaLaaLsparqrrlLRrWLaqlglpmpsaahLeellrqlllaaedaqpqldlpg.evrRyrgrLy 67 
                   +aL+++s+ r ++lLRrWLa +g++mps+  L+++ ++++l++edaqp+l+l++ e+rRyr+rLy
  EHU02424.1 241 CFSALLTMSEVRSNALLRRWLAGQGAQMPSRDALRRIRQEVMLSREDAQPRLRLGHsEIRRYRQRLY 307
                 6789***************************************************777********9 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.18       3      62 ..      15      80 ..      13     105 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
                EEE--SSHHHHHHHHHHHH.....H-SEEEEEEEESS-TTSHHHHHH..HHHHHHT--.-EEEEE-G CS
        QueC  3 vvllSGGlDSttvlalakk.....egkevealtfdYgqrhkkeleaa..kkiakelgveehkildld 62
                vv +SGGlDSt++l   ++        ++ al+++ g  +++++ aa  ++++++ ++   +il ++
  EHU02424.1 15 VVAFSGGLDSTVLLHKLRDwqqhhPASRLRALHVHHGLSANADHWAAhcQTLCATWQI-PCEILRVQ 80
                899**********976543110004467888888888775555433312567777777.66666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3339.62
//
Query:       EHU02425.1  [L=102]
Description: cytochrome c class I [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-09   36.2   0.3    7.3e-09   35.8   0.3    1.1  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    5.1e-08   34.0   0.4      1e-07   33.0   0.4    1.5  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.3   8.2e-13   7.3e-09       5      66 ..      24      96 ..      20      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 8.2e-13
  Cytochrome_CBB3  5 aGaalykknCasCHgkggag.....pslagrdwep.dalvdiiknGk..g....aMpafggqlsdeelwalvaY 66
                     aG+++  ++C +CHg++g +     pslag++ ++ ++  ++ k+G   g     M af   lsdee+ +l+aY
       EHU02425.1 24 AGEQR-SAACTACHGPKGIAtvplyPSLAGQNAAYlAHALQAYKKGErnGgqaeVMKAFVAGLSDEEITDLAAY 96
                     55555.569******888878*********9666443334444555423133447******************9 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.4   1.2e-11     1e-07      10      92 .]      30     101 ..      22     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.2e-11
                  TTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT- CS
  Cytochrom_C  10 anCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLkslk 92 
                  a C+aCHg++g ++ +  +p l+g+ +++ a  ++a+++        r++ + + ++a       +l+++ei dlaaY +slk
   EHU02425.1  30 AACTACHGPKGIATVPL-YPSLAGQNAAYLAHALQAYKKGE------RNGGQAEVMKAFV----AGLSDEEITDLAAYYSSLK 101
                  58************988.*********************99......4444555544443....47************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 794.75
//
Query:       EHU02426.1  [L=84]
Description: modulator of Rho-dependent transcription termination [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-26   92.2   0.0    1.8e-26   92.1   0.0    1.0  1  ROF       Modulator of Rho-dependent transcription terminatio


Domain annotation for each model (and alignments):
>> ROF  Modulator of Rho-dependent transcription termination (ROF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0     1e-30   1.8e-26       1      80 []       7      81 ..       7      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 1e-30
                SS--SSHHHHHHHHTTTT-EEEE-TTT--EEESS-EEE--S.SS-EEEEEETTEEEEESTT--SEEE....ETTTEEE-S CS
         ROF  1 pisCddyDylEiaClyryrlkleLkdgetiegkakdtltrkekeEyLvvetegeeqelrldeilslsvltenpefgrvvf 80
                pi+CddyD+lE+aC+++++l+l Lkdge++++ka+d+l+rk ++EyL++e +ge++elrld+i+s+s    +pe+g+vv+
  EHU02426.1  7 PINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRK-NVEYLAIELSGETRELRLDHIASFS----HPELGTVVV 81
                7****************************************.*************************....******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 688.07
//
Query:       EHU02427.1  [L=66]
Description: uncharacterized UPF0253 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-34  116.4   4.2    5.4e-34  116.3   4.2    1.0  1  UPF0253   Uncharacterised protein family (UPF0253)


Domain annotation for each model (and alignments):
>> UPF0253  Uncharacterised protein family (UPF0253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   4.2     3e-38   5.4e-34       1      65 []       1      65 [.       1      65 [. 0.99

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 3e-38
     UPF0253  1 mkkycelirelyaqIgsgdlgYipdAiscalktLdevaanealpeevrekAAyAAANLliSDyed 65
                m+kycel+r++ya+IgsgdlgYi dAi+cal++Ld++aan al++++re+AAyAAANLl+SDy+d
  EHU02427.1  1 MQKYCELVRQKYAEIGSGDLGYISDAIGCALNALDAIAANAALNSSLREQAAYAAANLLVSDYVD 65
                9**************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 589.52
//
Query:       EHU02428.1  [L=136]
Description: peptidyl-tRNA hydrolase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-25   88.9   0.9    2.6e-25   88.6   0.9    1.0  1  RF-1      RF-1 domain


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.9   1.4e-29   2.6e-25       4     116 .]       7     132 ..       4     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 1.4e-29
                 CCE--GGGEEEEEE---SSSSSSGCSSSCEEEE...EETTT......................TEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHC CS
        RF-1   4 eieidekdleidtfrssGaGGQnVNktesaVrl...thlpt......................gvivvecqeeRsqekNrekAlerLkaklkekeleee 77 
                 ++e++++++e++++r++GaGGQ+VNkt++a++l   +  ++                      g+i++++qe Rsqe+Nre Al+rL + ++e  l + 
  EHU02428.1   7 NVELPDNEIELTAIRAQGAGGQHVNKTSTAIHLrfdI--AAsslppfykerllsashhlitgdGTIIIKAQEYRSQEMNREAALQRLVNLIQE--LTKV 101
                 489******************************9553..4346999999*************999**************************55..4444 PP

                 CCCCHTTTTT-.S.-S---S--ECEEEECGCTTEEEETT CS
        RF-1  78 keeekkrrvkkekkkigtgssekiRtynkkpqsrvkdhr 116
                 ++ ++++r ++  +      s+ +R++ k+++s++k +r
  EHU02428.1 102 EKVRRSTRPTR--A------SKARRLEGKSRRSQTKALR 132
                 44444444444..3......5667777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1206.34
//
Query:       EHU02429.1  [L=572]
Description: prolyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-51  173.3   0.0    7.4e-51  172.7   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
      1e-24   87.0   0.1    2.1e-24   85.9   0.1    1.6  1  tRNA_edit       Aminoacyl-tRNA editing domain
    3.1e-20   72.1   0.4    6.7e-20   71.0   0.4    1.6  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.7   0.0   1.2e-54   7.4e-51       2     179 .]      95     459 ..      94     459 .. 0.99

  Alignments for each domain:
  == domain 1  score: 172.7 bits;  conditional E-value: 1.2e-54
                   EEEETTSEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   2 kledrndreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.easlddslrdlikaisriferlg 95 
                   ++ dr +r ++L+Pt+ee ++ lir+e l s k+LPl+lyqiqtk+RdE +  r G++R reF++kd+y+fh+ ++sl++ +  + +a+s+if+r+g
    EHU02429.1  95 RVADRHERPFVLGPTHEEVITDLIRNE-LSSyKQLPLNLYQIQTKFRDEVR-PRfGVMRSREFIMKDAYSFHTtQESLQETYDAMYRAYSQIFSRMG 189
                   6889***********************.999788*****************.888******************99********************** PP

                   .SCEEEEEEGTTSCBTTSEEEEEEEEETT.................................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................... RF
  tRNA-synt_2b  96 lefraiielmsaksadykdkkefeavses.................................................................... 124
                   l fra+  +++  s+ ++ + ef+++ +s                                                                    
    EHU02429.1 190 LDFRAVQADTG--SIGGSASHEFQVLAQSgeddvifstdsdyaanielaeavapagerpapqetmrqidtpnaktiadlvnqfqmpiektvktlmvk 284
                   *********99..689********************************************************************************* PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  tRNA-synt_2b 125 ................................................................................................. 124
                                                                                                                    
    EHU02429.1 285 gaegsghalvaflvrgdhelneikaeksplvasplvfateeeiravvgagfgslgpvgltmpiiadrtvakmsdfcaganvdgkhyvginwerdlpm 381
                   ************************************************************************************************* PP

                   .......................TSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   .......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 125 .......................ltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileqn 179
                                          +++gie+g+i++lgt++se+++a v  e++r++   m+c++ig++R+++a++eqn
    EHU02429.1 382 aevadirnvvegdlspdgkgtlqIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQVMTMGCYGIGITRVVAAAIEQN 459
                   ****************************************************************************98 PP

>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.1   3.5e-28   2.1e-24       1     121 [.     257     377 ..     257     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 3.5e-28
   tRNA_edit   1 tpgtktieelaaalgvdpsaiaKtlvlkdkkge...lvlvllpgdreldlkklakllga.kklrlaseeelrellgvepGgvgPlglkaagvpvllDes 95 
                 tp++kti++l+ +++ + ++++Ktl++k ++g    lv++l++gd+el++ k++k   + + l +a+eee+r+++g   G++gP+gl+   +p+++D +
  EHU02429.1 257 TPNAKTIADLVNQFQMPIEKTVKTLMVKGAEGSghaLVAFLVRGDHELNEIKAEKSPLVaSPLVFATEEEIRAVVGAGFGSLGPVGLT---MPIIADRT 352
                 79***************************6666778********************99779**************************7...******** PP

   tRNA_edit  96 lkeyptvvvgagengatlelspedlr 121
                 +++++++++ga+  g++    ++  r
  EHU02429.1 353 VAKMSDFCAGANVDGKHYVGINW-ER 377
                 ******************99999.44 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.4   1.1e-23   6.7e-20       1      93 [.     475     568 ..     475     569 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.1e-23
                     SEEEEESSSS.HHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnek.aeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     +v+++p+n++ + +++e+a+++++ Lra+g++v ldd++e++g  +++++l+g+p ++v+G++ l++++++ + r  +e+++++ de+v++l +
      EHU02429.1 475 DVAILPMNMQkSFRVKELAEEVYNTLRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARRAGEKQMIKQDEIVDFLLK 568
                     69*******8767788**************************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.34
# Mc/sec: 4974.43
//
Query:       EHU02430.1  [L=234]
Description: uncharacterized UPF0066 family protein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-44  151.1   0.0    1.8e-44  150.7   0.0    1.2  1  TrmO      tRNA-methyltransferase O
      1e-21   76.8   1.1    3.1e-21   75.2   0.3    1.9  2  TrmO_C    TrmO C-terminal domain
  ------ inclusion threshold ------
       0.14   11.4   0.0        0.2   10.9   0.0    1.2  1  OSK       OSK domain


Domain annotation for each model (and alignments):
>> TrmO  tRNA-methyltransferase O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.0   3.1e-48   1.8e-44       2     118 ..      22     142 ..      21     143 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 3.1e-48
                 S-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEE....TTEEE CS
        TrmO   2 iPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekve....gnvle 96 
                 +Prqpgl+++  +e++l p+yn++ea++gle+fshlw+lfvfh++ e +++++vrpprlggn r+GvfatRs++Rpnpig+s+++l+ ++    + +le
  EHU02430.1  22 VPRQPGLVQDGGGELHLLPPYNQAEAVRGLEDFSHLWVLFVFHQTLEGGWRPTVRPPRLGGNVRMGVFATRSTFRPNPIGMSLIELKGIRcakqQVILE 120
                 8********************************************99******************************************999877999* PP

                 EES----TT-EEEEEEE--HHH CS
        TrmO  97 vsgvDlldgtpvlDiKPYvpya 118
                 + ++Dl+dgtpv+DiKPY+p+a
  EHU02430.1 121 LGSLDLVDGTPVVDIKPYLPFA 142
                 *******************975 PP

>> TrmO_C  TrmO C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.3   5.2e-25   3.1e-21       2      65 .]     160     222 ..     159     222 .. 0.96
   2 ?   -0.4   0.0      0.22   1.3e+03      30      38 ..     226     234 .]     226     234 .] 0.91

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 5.2e-25
      TrmO_C   2 kleVeFseeaeaqlqqlqksapdlkqlIeevLaqDPRPaYkkskpeeriYgmrLydlnirwrve 65 
                  ++V+Fs+ a +qlqq+  ++p l ++I+evLaqDPRPaY+k ++++riY+ +L+++ +rwrv+
  EHU02430.1 160 SMPVRFSPLAGQQLQQYA-RYPYLARFIREVLAQDPRPAYRKGEEKDRIYAASLLEFTVRWRVD 222
                 699**************5.8******************************************96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.22
      TrmO_C  30 eevLaqDPR 38 
                 +ev+a+DPR
  EHU02430.1 226 TEVVAIDPR 234
                 59******9 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.3e-05       0.2      64      93 ..     107     136 ..     100     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
                 HHT----T-EEEEE--HHHHHTT--HHHHH CS
         OSK  64 lekielissrvvvnlGsvDilngktlvele 93 
                 l+ i+  +++v+++lGs D++ g ++v+++
  EHU02430.1 107 LKGIRCAKQQVILELGSLDLVDGTPVVDIK 136
                 77899999*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1893.99
//
Query:       EHU02431.1  [L=132]
Description: outer membrane lipoprotein [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-48  163.9   0.6    1.3e-48  163.6   0.6    1.1  1  RcsF       RcsF lipoprotein
  ------ inclusion threshold ------
       0.01   15.5   1.0      0.012   15.2   1.0    1.1  1  Adeno_E1A  Early E1A protein
      0.028   13.6   0.1      0.045   12.9   0.1    1.3  1  DUF5006    Domain of unknown function (DUF5006)
       0.09   13.1   0.0       0.11   12.8   0.0    1.2  1  DUF4156    Domain of unknown function (DUF4156)


Domain annotation for each model (and alignments):
>> RcsF  RcsF lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.6   2.9e-52   1.3e-48       9     110 .]      30     130 ..      22     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 2.9e-52
        RcsF   9 klkakkpakpkkakaaapvklykkaeeLlgkpFrdlGevsGesCrsslqdspasiatarkrmqiraaklkanavLlhqCeivsgvagCyqqaiCeGsal 107
                  +++++p   k++ ++apvk+y++a +L++kpFrdlGevs e+C++s+q+sp++iatarkrmqi+aa++kanavLlh+Ceivs+++gCy+qa+C+Gsal
  EHU02431.1  30 PQQSSEP-TRKPTYRPAPVKVYTDAADLVSKPFRDLGEVSAEDCQMSNQSSPPNIATARKRMQIKAAQMKANAVLLHKCEIVSSTPGCYRQAVCQGSAL 127
                 3333344.55889************************************************************************************** PP

        RcsF 108 kvs 110
                 kv+
  EHU02431.1 128 KVT 130
                 *97 PP

>> Adeno_E1A  Early E1A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.0   2.8e-06     0.012     170     256 ..       6      96 ..       4     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.8e-06
   Adeno_E1A 170 mcslcymrtcgmfvyspvsepepepepepepar.ptrrpklvpailrrp...tspvsrecnsstdscdsgpsntppeihpvvplcpikpva 256
                 +c l+ m t  +  y p+s     p+   ep+r pt rp  v          + p     + s++ c+     +pp+i        ik   
  EHU02431.1   6 LCLLALMLTGCVREYHPISSAPSHPQQSSEPTRkPTYRPAPVKVYTDAAdlvSKPFRDLGEVSAEDCQMSNQSSPPNIATARKRMQIKAAQ 96 
                 699999***************9*****99998669999987765443321114455555688999*************9888777777655 PP

>> DUF5006  Domain of unknown function (DUF5006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     1e-05     0.045       7      29 ..       3      23 ..       1      32 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
     DUF5006  7 lLPvcllallltGCeDddkvepl 29
                +LP+cllal ltGC    +++p+
  EHU02431.1  3 FLPLCLLALMLTGCV--REYHPI 23
                8*************4..445554 PP

>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.5e-05      0.11      23      70 ..      63     107 ..      41     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
     DUF4156  23 llGevtgsqgnwlsgiftsnkelvrgaandLrneAaalGgntivlvts 70 
                  lGev++++ +    +++s    + +a+  ++ +Aa++ +n ++l++ 
  EHU02431.1  63 DLGEVSAEDCQM---SNQSSPPNIATARKRMQIKAAQMKANAVLLHKC 107
                 678888777766...4567888899******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1052.83
//
Query:       EHU02432.1  [L=271]
Description: receptor component of DL-methionine uptake transporter (MUT) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-100  334.2   2.0   3.5e-100  334.0   2.0    1.0  1  Lipoprotein_9   NLPA lipoprotein
    3.3e-05   23.6   0.9    4.6e-05   23.1   0.8    1.6  1  OpuAC           Substrate binding domain of ABC-type glycine 
     0.0023   17.6   0.2     0.0061   16.2   0.0    1.7  2  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
       0.01   15.8   0.1       0.17   11.8   0.0    2.1  2  NMT1            NMT1/THI5 like


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.0   2.0  7.8e-104  3.5e-100       1     236 []      33     271 .]      33     271 .] 0.99

  Alignments for each domain:
  == domain 1  score: 334.0 bits;  conditional E-value: 7.8e-104
                    EEEEEETTTHHHHHHHHHHHHHTTT.EEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG-- CS
  Lipoprotein_9   1 lkvGvlsgpeaevlekvkkllkkkg.ldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselk 95 
                    +kvGv+ g+e++v+e+++k++k+k+ ld+e+v+F+dyv pN+al++g+iD+naFQh+pyL+q+ k++g+klv+vgn +v+pi+ YSkk+ksl++l+
     EHU02432.1  33 IKVGVIVGAEQQVAEAAAKVAKDKYgLDVELVTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKSLDQLQ 128
                    89********************************************************************************************** PP

                    TT-EEEEESSHHHHHHHHHHHHHTTSSEE-TT-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGT..SSEEEE-HHHHHHTT--HHHH-SEE-SST CS
  Lipoprotein_9  96 eGatiavpndpsnegRaLllLekagLikLkdgkgllatvkdIteNpknLkikeleaaqlpraldd..vdaavintnyalkagldpkkdalfeedkd 189
                    +Ga++a+pndp+n gR LllL+k gLikLkdg gll t  dI+eNpk+Lki elea qlpr+ldd  +++avint+ya++ gl+p kd++f+edkd
     EHU02432.1 129 DGAQVAIPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTSLDIVENPKHLKIVELEAPQLPRSLDDqqIALAVINTTYASQIGLTPAKDGIFVEDKD 224
                    ****************************************************************9999**************************** PP

                    SSG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHHTTTSSEE-S CS
  Lipoprotein_9 190 spyvniivvrekdkddeavkklveayqseevkkaiekkykgavvpaw 236
                    spyvn+iv+re++ d+e+vkk+v+ayqs+ev++a++k ++g++v++w
     EHU02432.1 225 SPYVNLIVAREDNRDAENVKKFVQAYQSDEVADAANKVFNGGAVKGW 271
                    ********************************************998 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.8     1e-08   4.6e-05       2     113 ..      32     132 ..      31     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1e-08
                 EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaeky 100
                 +i++g+   +eq+v  + +k +  k G++vel++++ ++   +al++GdiDv +    + +++++k+   ++++l+      +gn   + +  y    +
  EHU02432.1  32 HIKVGVIVGAEQQVAEAAAKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKD---RGYKLV-----SVGNSFVYPIAGYS---K 119
                 799***********999999999999****************************9999988888887...344444.....45666666666666...6 PP

                 TTTBHHHHCTHHG CS
       OpuAC 101 giksisDLkkpae 113
                 +iks+++L++ a+
  EHU02432.1 120 KIKSLDQLQDGAQ 132
                 7777777766555 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.4e-06    0.0061      20     113 ..      50     138 ..      41     156 .. 0.86
   2 ?   -1.5   0.0      0.35   1.6e+03      81     100 ..     223     243 ..     190     263 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.4e-06
                     HHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHH.GG-EEEE-- CS
  Phosphonate-bd  20 adyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledL.kgktiafvs 112
                     a++ +++ G +velv+++dy    eal+ g +D+  ++  +y+  + ++ g++++ +  +       + + i++ + +i+sl++L +g+++a++ 
      EHU02432.1  50 AKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDrGYKLVSVGNS-------FVYPIAGYSKKIKSLDQLqDGAQVAIPN 137
                     45556788**************************************99868888877776.......8999**************9999999976 PP

                     T CS
  Phosphonate-bd 113 p 113
                      
      EHU02432.1 138 D 138
                     5 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.35
                     --SEEEEEEEEETTSS.--SH CS
  Phosphonate-bd  81 Gsasyrsviivradsd.iqsl 100
                      ++ y  +i++r+d+   +++
      EHU02432.1 223 KDSPYVNLIVAREDNRdAENV 243
                     256777777777776325444 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.9e-05      0.17      19      77 ..      57     117 ..      55     158 .. 0.80
   2 ?    1.9   0.0      0.04   1.8e+02     177     203 ..     227     251 ..     171     253 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.9e-05
                 TTEEEEEE--SSTTHHHHHHHCTS-SE.EEE-HHHHHHH.HHTT--EEEEEEEE-S--EEE CS
        NMT1  19 eGldVeivepadpsdatelvasgkadf.gvsyqesllaa.rakglpvvsvaallqeplsgl 77 
                  GldVe+v  +d   + e++ +g+ d+ ++++++ l ++ +++g+++vsv++ +  p  g+
  EHU02432.1  57 YGLDVELVTFNDYVLPNEALSKGDIDVnAFQHKPYLDQQiKDRGYKLVSVGNSFVYPIAGY 117
                 69*************************999999999866266*********9986665554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.04
                 -SEEEEEEHHHHHH-HHHHHHHHHHHH CS
        NMT1 177 yslvlitnekllkenpelvkkFlrAlk 203
                 y +++++ e+  ++  e vkkF++A++
  EHU02432.1 227 YVNLIVAREDNRDA--ENVKKFVQAYQ 251
                 66788888888877..99*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1978.24
//
Query:       EHU02433.1  [L=217]
Description: membrane component of DL-methionine uptake transporter (MUT) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-21   76.0  16.6    3.1e-21   76.0  16.6    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0  16.6   1.7e-25   3.1e-21       1     180 [.      31     215 ..      31     217 .] 0.85

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.7e-25
  BPD_transp_1   1 gillGilaa......lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   g+++G+l+          nk l ++l+ l+++++s+P+++l++ ++ +  ++ +   +  ++i+ l+++aap++ +++++al +lp++l+ea+ra+G
    EHU02433.1  31 GLPVGVLLYvtrpgqILENKGLYRVLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLELPTGLIEASRAMG 127
                   56677777666666667788899*****************666666544555566667888************************************ PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllle.ailgydyseisnggvlalviavlllnlvadilqrlld 180
                   a++ qi+rkv+lP alp ++  + ++++ l+g +++   +g++ Glg+   +  ++gy+ + ++ ++++ lv++v l+ ++ d ++r+++
    EHU02433.1 128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG-GLGQIGYQyGYIGYNATVMN-TVLVLLVVLVYLIQFCGDRIVRAVS 215
                   *****************************************66.68877766245556666555.9999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1579.95
//
Query:       EHU02434.1  [L=343]
Description: ATP-binding component of DL-methionine uptake transporter (MUT) [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-36  123.6   0.0    1.6e-35  122.6   0.0    1.5  1  ABC_tran     ABC transporter
    1.4e-20   72.9   0.0    2.6e-20   72.0   0.0    1.5  1  NIL          NIL domain
    9.4e-09   35.5   0.5    0.00061   19.7   0.0    2.3  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    7.9e-07   28.7   0.1    2.2e-06   27.3   0.1    1.7  1  SMC_N        RecF/RecN/SMC N terminal domain
    2.5e-05   24.6   0.4    0.00019   21.7   0.4    2.2  1  AAA_22       AAA domain
     0.0013   19.1   2.0     0.0043   17.5   2.0    2.1  1  AAA_16       AAA ATPase domain
      0.006   16.3   0.0      0.012   15.3   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0064   16.1   0.2        3.8    7.1   0.0    2.9  3  AAA_25       AAA domain
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.032   14.2   0.1    1.5  1  RsgA_GTPase  RsgA GTPase
      0.029   14.6   0.1       0.23   11.7   0.1    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.036   13.8   0.1      0.094   12.4   0.1    1.7  1  AAA_30       AAA domain
      0.053   12.9   0.0       0.68    9.3   0.0    2.2  2  TniB         Bacterial TniB protein
       0.12   11.2   0.2        3.2    6.4   0.0    2.3  2  ABC_ATPase   Predicted ATPase of the ABC class
       0.14   12.7   0.0       0.31   11.5   0.0    1.6  1  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.0   1.3e-38   1.6e-35       1     137 []      21     169 ..      21     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 1.3e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 l+nvsl++ +g++++++G +GaGKStL++++  l++p +G++l+dg+dl+    ++l+++r++ig+++q+ +l +  tv+ n             e ++
  EHU02434.1  21 LSNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPSSGRVLVDGADLTAlseRQLTQARRQIGMIFQHFNLMNSRTVAGNvalplelgslsrdEIKK 119
                 78************************************************99999************************************99999999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++l+ +gl +++d      p++LSgGqkqrva+aral+++pk+ll+DE+t+
  EHU02434.1 120 RVSELLELVGLADKHDAW----PANLSGGQKQRVAIARALASNPKVLLCDEATS 169
                 999999999999944444....6*****************************96 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0     2e-23   2.6e-20       2      73 .]     268     339 ..     267     339 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 2e-23
                 EEEEEEES-S-SS-HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT-EEEE CS
         NIL   2 lirltftgksavePllshlvrqlglevnIlqGsveriqgtpfGqlvielsgsqesiaaalqylrkrnvdvEv 73 
                 l+r  ftg+s++ Plls+ +r+++++ nI+++++++ +g +fG ++ e+ gs+ + +aa+q+l++++v+vEv
  EHU02434.1 268 LLRMEFTGQSVDAPLLSEAARRFNINNNIISAQMDYAGGVKFGIMLAEIHGSESDTQAAIQWLQEHHVKVEV 339
                 89*********************************************************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.7e-05     0.034       2      24 ..      34      56 ..      33      87 .. 0.82
   2 !   19.7   0.0   4.8e-07   0.00061     235     298 ..     139     200 ..     108     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 ++iG+ g+GKS+L+++  ll r
  EHU02434.1 34 YGVIGASGAGKSTLIRCVNLLER 56
                689***************99954 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.8e-07
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++lS G+k+  a++ al++ +   ++ll DE  + L+P+ +r++lellk+ +r  g  ++l TH 
  EHU02434.1 139 ANLSGGQKQRVAIARALASNP---KVLLCDEATSALDPATTRSILELLKDINRrLGLTILLITHE 200
                 578999999989999999888...9***********************555555**********6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.7e-09   2.2e-06      25     213 ..      32     215 ..      15     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.7e-09
                 SEEEEEESTTSSHHHHHHHHHHHCTT..TTTTT.TCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGer.sakkl.rseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 ++  ++G+ G+GKs l+  +  +L    s + l   ++l++l  ++ ++a+ + + +  +f+  +++    +   ++   ++ +  s+ +i+++  +  
  EHU02434.1  32 QIYGVIGASGAGKSTLIRCV-NLLERPsSGRVLvDGADLTALSERQLTQARRQIGMIFQHFNLMNSR----TVAGNVALPLELGSLSRDEIKKRVSELL 125
                 46789***************.4555431333331233444444444444444555555555444444....455667777777777888999******* PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 e+  l  +++  + +LSgG+k+ va+a  +A +   p+ + l De  +aLD + ++ + ellk  + +    ++ i+++ +++++    v v +
  EHU02434.1 126 ELVGLADKHDAWPANLSGGQKQRVAIARALASN---PK-VLLCDEATSALDPATTRSILELLKDINRRlgLTILLITHEMDVVKRICDQVAVIS 215
                 ***************************998864...44.4578********************6555433889999999999998866555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.4   1.5e-07   0.00019       7     131 ..      33     200 ..      30     207 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.5e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee................................erpevvfvtlpsstsskdllrellralglelka... 70 
                 i  v+G sG+GK+tl+r +      +++  +                                +++++v             + +++  l+l+  +   
  EHU02434.1  33 IYGVIGASGAGKSTLIRCVNLLE--RPSSGRvlvdgadltalserqltqarrqigmifqhfnlMNSRTV-------------AGNVALPLELGSLSrde 116
                 6669*************999985..45555588989999999999999665555555555555444444.............33333333333333444 PP

      AAA_22  71 .......................erlsseellealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGtp 131
                                        +    +  + a+++al +  +  +l+ DEa   l+   +  +le L+++    r g++++L+ ++
  EHU02434.1 117 ikkrvsellelvgladkhdawpaNLSGGQKQRVAIARALASNPK--VLLCDEATSaLDpatTRSILELLKDINR--RLGLTILLITHE 200
                 44444444445544455576665444444444566666666655..*********9988755999999999999..999999998765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.0   3.3e-06    0.0043      18     163 ..      27     187 ..      15     334 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.3e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql.esaipysalaqalareellrqllde..................aesaelea 96 
                  v +g  ++  ++G+sG GKs+l+r++   le+   g +l   +d    s++ + +  ++      +  + ++                  +       
  EHU02434.1  27 HVPAG--QIYGVIGASGAGKSTLIRCVN-LLERPsSGRVLVDGADLTaLSERQLTQARRQ------IGMIFQHfnlmnsrtvagnvalpleL------- 109
                 44444..67889***************9.7888842444444444332111111111111......22222222222222222222222221....... PP

      AAA_16  97 wrekleealaavpelagaeasrllellkrllallsrder......................plvlvlDdlq.wadeaslql.laaLlrlle 163
                             ++l+++e +    +l +l+ l+ +++                       p vl++D++   +d+a+    l++L +  +
  EHU02434.1 110 ------------GSLSRDEIKKRVSELLELVGLADKHDAwpanlsggqkqrvaiaralasnPKVLLCDEATsALDPATTRSiLELLKDI-N 187
                 ............22222222222222222222222211122222222222233333333335677777776444444444414444333.3 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.4e-06     0.012      19      43 ..      28      52 ..      19      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.4e-06
      AAA_29 19 idlkg.atlltGpsGsGKSTllDAiq 43
                +  +g ++ ++G+sG+GKSTl+  ++
  EHU02434.1 28 VP-AGqIYGVIGASGAGKSTLIRCVN 52
                54.4447889***********96555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0029       3.8      26      50 ..      24      48 ..      12      53 .. 0.88
   2 !    5.7   0.0    0.0074       9.5     163     188 ..     174     199 ..     112     201 .. 0.72
   3 ?   -3.7   0.0         6   7.7e+03     120     136 ..     316     333 ..     305     339 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0029
      AAA_25 26 vkgllpagelallaGapgtGKttla 50
                v  ++pag +  ++Ga+g+GK+tl 
  EHU02434.1 24 VSLHVPAGQIYGVIGASGAGKSTLI 48
                556899*****************95 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0074
      AAA_25 163 sdvgalvealeriarrtgaavllvhH 188
                 + +++++e l++i rr+g ++ll+ H
  EHU02434.1 174 ATTRSILELLKDINRRLGLTILLITH 199
                 3348999******************* PP

  == domain 3  score: -3.7 bits;  conditional E-value: 6
      AAA_25 120 drggtl.ltadvdaleaa 136
                 ++g++  ++a++++l+++
  EHU02434.1 316 IHGSESdTQAAIQWLQEH 333
                 555555445555555443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.5e-05     0.032      83     119 ..      14      51 ..       3      63 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
                  -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  83 saktkegleelkellkd.ktsvlvGqSGvGKStLinal 119
                   ++t ++l++++ ++   ++  ++G SG+GKStLi  +
   EHU02434.1  14 GSRTIKALSNVSLHVPAgQIYGVIGASGAGKSTLIRCV 51 
                  5555566666666665559999************9765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00018      0.23      53      89 ..     154     184 ..     131     185 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
     SbcCD_C  53 lyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 ++ s      ++++++ DEA s lD+ +++++lell+
  EHU02434.1 154 ALAS------NPKVLLCDEATSALDPATTRSILELLK 184
                 3333......588999*******************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.4e-05     0.094      20     114 ..      33     188 ..      24     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.4e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi.....glAptgkaAkvLaeelgi........eastiakllkrlk........................ 81 
                 +  + G+ G+GK+t+++ ++ + + + grv+     + A ++++  + ++++g+        +++t+a  +   +                        
  EHU02434.1  33 IYGVIGASGAGKSTLIRCVNLLERPSSGRVLvdgadLTALSERQLTQARRQIGMifqhfnlmNSRTVAGNV---Alplelgslsrdeikkrvsellelv 128
                 67799*************99999999666664655567777888777888888545555555777777666...1335788888899999999999999 PP

      AAA_30  82 .......................grarlepg.tllivDEagmv....dtkqlaallkaaek 114
                                        +ra l+++ ++l+ DEa  +     t+++ +llk +++
  EHU02434.1 129 gladkhdawpanlsggqkqrvaiARA-LASNpKVLLCDEATSAldpaTTRSILELLKDINR 188
                 99999999999999999999887533.4444599999999877755556666666666555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.19   2.4e+02      38      53 ..      34      49 ..      10      60 .. 0.79
   2 ?    9.3   0.0   0.00053      0.68     107     160 ..     146     197 ..     130     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.19
        TniB 38 lllvGdsnnGKtmive 53
                + ++G s  GK+++++
  EHU02434.1 34 YGVIGASGAGKSTLIR 49
                5689*********997 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00053
        TniB 107 leqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 +++ +++   + +++vL+ DE  ++l     + r +l++lk ++++l ++i l+
  EHU02434.1 146 KQRVAIARALASNPKVLLCDEATSAL--DPATTRSILELLKDINRRLGLTILLI 197
                 45555555567899************..88999***************999876 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.042        53     241     264 ..      27      51 ..      18      66 .. 0.89
   2 ?    6.4   0.0    0.0025       3.2     321     352 ..     139     170 ..     130     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.042
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  +p G +  ++G    GKsTL++ +
  EHU02434.1  27 HVPAGqIYGVIGASGAGKSTLIRCV 51 
                 688999999************9976 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0025
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsA 352
                 ++ SG   q ++i++al  + k+lL DE tsA
  EHU02434.1 139 ANLSGGQKQRVAIARALASNPKVLLCDEATSA 170
                 5779***************************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.31      20      41 ..      32      53 ..       4      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
      AAA_23 20 gltlItGpNGaGKTTildAikl 41
                 ++ ++G  GaGK+T+++++ l
  EHU02434.1 32 QIYGVIGASGAGKSTLIRCVNL 53
                577889************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2540.46
//
Query:       EHU02435.1  [L=186]
Description: D,D-heptose 1,7-bisphosphate phosphatase [Pantoea stewartii subsp. stewartii DC283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-14   52.2   0.1    2.5e-07   31.0   0.1    2.1  2  HAD_2            Haloacid dehalogenase-like hydrolase
    2.6e-13   49.8   0.0    4.2e-13   49.1   0.0    1.3  1  Hydrolase_like   HAD-hyrolase-like
      1e-09   39.0   0.1    5.4e-09   36.6   0.0    2.0  2  Hydrolase        haloacid dehalogenase-like hydrolase
    5.1e-09   36.0   0.0      7e-09   35.6   0.0    1.1  1  PNK3P            Polynucleotide kinase 3 phosphatase
    9.8e-06   25.6   0.0    1.9e-05   24.7   0.0    1.6  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
     0.0049   17.3   0.3      0.013   15.9   0.0    1.8  2  HAD              haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.016   14.9   0.0       0.02   14.6   0.0    1.2  1  Glyco_trans_4_3  Glycosyl transferase family 4 group
       0.17   11.6   0.1        7.3    6.2   0.0    2.1  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.4e-07   0.00098      75     105 ..      25      56 ..      15      72 .. 0.87
   2 !   31.0   0.1   1.1e-10   2.5e-07     130     173 ..     106     149 ..     100     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.4e-07
       HAD_2  75 k.kevkpydgvkelLeeLkeagyklgivTsks 105
                 + ++++++dgv+e+L++Lk++g+ l +vT++s
  EHU02435.1  25 EiDHFQFIDGVIEALQQLKKMGFALVVVTNQS 56 
                 34589*************************86 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 1.1e-10
       HAD_2 130 dvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagi 173
                 ++  +KP+p ++++a e+l+++ +   +vGD+  D++aa++ag+
  EHU02435.1 106 QCDCRKPQPGMLLAAQEELHIDMAASYMVGDKLEDMQAAQAAGV 149
                 66678**************************************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.9e-16   4.2e-13       2      73 ..     109     177 ..     108     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.9e-16
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedleepehkptyvaddla 73 
                     ++KP+p+m+ +a e+l++d ++++m+GD+   D+++A++aG+   vLV++G+    + e   + +++v+++la
      EHU02435.1 109 CRKPQPGMLLAAQEELHIDMAASYMVGDK-LEDMQAAQAAGVGKkVLVRSGKPVTPEGE---ALADWVIESLA 177
                     89***************************.***********8544******97765645...56788888886 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.55   1.2e+03       3      13 ..       7      17 ..       5      26 .. 0.76
   2 !   36.6   0.0   2.4e-12   5.4e-09     115     210 .]      27     148 ..      17     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.55
                EEEEESBTTTB CS
                xxxxxxxxxxx RF
   Hydrolase  3 tvvfDkdGTLt 13
                ++++D dGTL 
  EHU02435.1  7 AIFLDRDGTLN 17
                89*******96 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 2.4e-12
                 HTHHBHTTHHHHHHHHHHTTEEEEEEESSEH...............HHHH.HHHHH.TT..GGGE.SEEEEHHCES......STTTSHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxx.xxxxx.xx..xxxx.xxxxxxxxxx......xxxxxxxxxxxxxxxxx RF
   Hydrolase 115 dplkvkpeaaeavasLkaagievvlltgdnp...............etae.raanq.lG..ddyf.daviasdiet......vakpspegkvaaireLq 187
                 d  +  +++ ea+++Lk++g+ +v++t+++                e  + ++a++ ++    yf  ++ ++++e+      + kp p +++aa +eL 
  EHU02435.1  27 DHFQFIDGVIEALQQLKKMGFALVVVTNQSGiargmfsedqfmqltEWMDwSLADRdVDldGIYFcPHHPDATVEAyrqqcdCRKPQPGMLLAAQEELH 125
                 555678999******************99999999999********8888888888888987888788888888888999******************* PP

                 STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 gkpeevamVGDgvnDaaalaaAg 210
                 ++ +   mVGD + D++a++aAg
  EHU02435.1 126 IDMAASYMVGDKLEDMQAAQAAG 148
                 **********************8 PP

>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   3.1e-12     7e-09       8     127 ..      13     137 ..       7     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3.1e-12
       PNK3P   8 DstliktksgkefakdaddwkllsesvlekLkklkeegykivifsNqggvvek.ktkkslekfkekieallkeldvpll.vyaatkk...........d 93 
                 D+tl   +      ++ d +++++  v+e L++lk+ g+ +v+++Nq+g+++   +++++ +++e ++  l++ dv+l  +y  +++            
  EHU02435.1  13 DGTLNVDHGY---VHEIDHFQFID-GVIEALQQLKKMGFALVVVTNQSGIARGmFSEDQFMQLTEWMDWSLADRDVDLDgIYFCPHHpdatveayrqqC 107
                 5555444432...23457788886.6*************************976677778888888888787779987448888888788888887763 PP

       PNK3P  94 kyRKPetGmweelkkdleekleidkeksfyvGDa 127
                   RKP++Gm+ + +++l    +id+  s+ vGD 
  EHU02435.1 108 DCRKPQPGMLLAAQEEL----HIDMAASYMVGDK 137
                 69*******99887765....5799999999996 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   8.5e-09   1.9e-05       1      48 [.       8      64 ..       8      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.5e-09
                 EEEESTTTSE.........ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHH CS
  Hydrolase_6  1 flfDidGvLw.........rgdkaipgaaealnalraagkpvvllTNnsskseeeya 48
                 +++D dG+L          +  + i+g+ eal++l+++g  +v++TN+s+  +  + 
   EHU02435.1  8 IFLDRDGTLNvdhgyvheiDHFQFIDGVIEALQQLKKMGFALVVVTNQSGIARGMFS 64
                 578999999988888887778899*************************99876665 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.7     6e+03       1       9 [.       8      16 ..       8      20 .. 0.88
   2 !   15.9   0.0   5.7e-06     0.013      72     188 .]      25     145 ..      17     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
         HAD  1 alfDfDgTL 9 
                +++D DgTL
  EHU02435.1  8 IFLDRDGTL 16
                699*****9 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.7e-06
         HAD  72 elerfvaevirpklldpgalellaahraaGdrvvvvSgglrplvepll.aelg.adevlatelevdd.rltgelglegkpvrgegkvaalre....... 160
                 e+++f+       ++  g+ e+l++ ++ G+ +vvv++   +    +  +++    e ++ +l+ +d +l+g    +  p + +++v a r+       
  EHU02435.1  25 EIDHFQ-------FI-DGVIEALQQLKKMGFALVVVTNQSGIARGMFSeDQFMqLTEWMDWSLADRDvDLDGI---YFCPHHPDATVEAYRQqcdcrkp 112
                 444444.......44.899*********************999999997677776666666777788888888...55555555667666667788888 PP

         HAD 161 .....wlaaegegidleevvayGDspsDlpllr 188
                       +a+e+ +id + ++ +GD   D+++++
  EHU02435.1 113 qpgmlLAAQEELHIDMAASYMVGDKLEDMQAAQ 145
                 9999999***********************996 PP

>> Glyco_trans_4_3  Glycosyl transferase family 4 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   8.9e-06      0.02      50     106 ..      33      87 ..       8     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.9e-06
  Glyco_trans_4_3  50 eavaraaeeLkkeGfvPDvivaHsgwGetlflkdvfPdarlllYfeffYraegadvd 106
                       +v++a+++Lkk Gf+  v+   sg+   +f +d f  ++l  +++++   +  d d
       EHU02435.1  33 DGVIEALQQLKKMGFALVVVTNQSGIARGMFSEDQF--MQLTEWMDWSLADRDVDLD 87 
                      5799********************************..*********8766665543 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0032       7.3       1      38 [.       8      53 ..       8      61 .. 0.82
   2 ?    3.4   0.0     0.024        53     195     225 ..     120     150 ..     116     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0032
                 EEEEIIIII.S-.......TTS---HHHHHHHHHHHHTTSEEEEE- CS
  Hydrolase_3  1 ialDlDGTL.ln.......sdkkisektkeaikklkekgikvviAT 38
                 i+lD DGTL ++       ++ +  +  +ea+++lk+ g+ +v+ T
   EHU02435.1  8 IFLDRDGTLnVDhgyvheiDHFQFIDGVIEALQQLKKMGFALVVVT 53
                 79999****54477777655556678999**************999 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEE CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglg 225
                   ++el i+++  + +GD+  D++  +aag+g
   EHU02435.1 120 AQEELHIDMAASYMVGDKLEDMQAAQAAGVG 150
                  57899******************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1399.52
//
[ok]
